BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780766|ref|YP_003065179.1| recombination protein F
[Candidatus Liberibacter asiaticus str. psy62]
         (375 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040443|gb|ACT57239.1| recombination protein F [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 375

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/375 (100%), Positives = 375/375 (100%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS
Sbjct: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL
Sbjct: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS
Sbjct: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF
Sbjct: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
           CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF
Sbjct: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE
Sbjct: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360

Query: 361 TAKFMRISNHQALCI 375
           TAKFMRISNHQALCI
Sbjct: 361 TAKFMRISNHQALCI 375


>gi|315121983|ref|YP_004062472.1| recombination protein F [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495385|gb|ADR51984.1| recombination protein F [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 375

 Score =  634 bits (1634), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 303/373 (81%), Positives = 342/373 (91%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M N+IKIK LN+SEFRNY SLRLVFD+Q TIFVGDNG GKTNILEAIS LSPGRG RRAS
Sbjct: 1   MINKIKIKRLNVSEFRNYVSLRLVFDSQQTIFVGDNGAGKTNILEAISLLSPGRGLRRAS 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y+DVTRIGS S FSTFA VEGM+GLA+ISIKLE++DDRS+RCL+INDV IRVVDELN HL
Sbjct: 61  YSDVTRIGSLSLFSTFACVEGMDGLAEISIKLESKDDRSIRCLRINDVAIRVVDELNSHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+SWLVPSMDRIFSG S ERRRFLDRMVF+IDPRHRRR+IDFERLMRGRNRLL+EG FD 
Sbjct: 121 RVSWLVPSMDRIFSGPSTERRRFLDRMVFSIDPRHRRRIIDFERLMRGRNRLLSEGCFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SWCSSIE+QMA LGV+I+IARV+MI+ LSSL+ EY+QKENFPH++L+LTGFLDGK +QSF
Sbjct: 181 SWCSSIESQMAGLGVEIDIARVKMIDELSSLMAEYIQKENFPHVELNLTGFLDGKLNQSF 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             LK+EY K LFDGR++DS++RRTLIGPHRSDL+VDYCDK I I HGSTGEQKVVLVGIF
Sbjct: 241 LELKQEYVKILFDGRRIDSIARRTLIGPHRSDLVVDYCDKDIKIVHGSTGEQKVVLVGIF 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARLISNTTGFAPILLLDEISAHLDE +RNALFRIV+DIGSQIF+TGTD+S+F SL++
Sbjct: 301 LAHARLISNTTGFAPILLLDEISAHLDEGRRNALFRIVSDIGSQIFITGTDRSMFSSLSD 360

Query: 361 TAKFMRISNHQAL 373
           TA FMRI+NHQA 
Sbjct: 361 TATFMRIANHQAF 373


>gi|222084353|ref|YP_002542882.1| DNA replication and repair protein [Agrobacterium radiobacter K84]
 gi|254790457|sp|B9JGW1|RECF_AGRRK RecName: Full=DNA replication and repair protein recF
 gi|221721801|gb|ACM24957.1| DNA replication and repair protein [Agrobacterium radiobacter K84]
          Length = 375

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 189/369 (51%), Positives = 258/369 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ I  L +++FRNYA+  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVFISRLKLTDFRNYAAAALTLDERHVVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R+ +P+ FS FA +EGME   +I   ++T D+ + R L+IN    + VDEL  HL
Sbjct: 61  YADVVRVAAPNGFSIFAELEGMEDTVEIGTGVDTSDETTARKLRINGTPAKTVDELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S ERRRFLDR+V ++DP H RR  DFER MR RNRLL+E  FD 
Sbjct: 121 RVLWLTPAMDGLFTGGSSERRRFLDRLVLSLDPAHGRRASDFERAMRSRNRLLSESRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ LI E  +   FP   L L+GFLDG+FD+  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIAETREATPFPSAALELSGFLDGQFDRPA 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L++ YA  L +GR  D+ + RTL GPHR+DL+V + +K +     STGEQK +LVG+ 
Sbjct: 241 LDLEDAYAGMLREGRYRDAAAGRTLDGPHRTDLLVRHREKDMEAERCSTGEQKALLVGLI 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG AP+LLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L E
Sbjct: 301 LAHARLVGNLTGHAPVLLLDEIAAHLDEGRRAALFDLIDRLGGQAFMTGTDRAMFSALGE 360

Query: 361 TAKFMRISN 369
            A+F  +++
Sbjct: 361 RAQFFTVAH 369


>gi|116249915|ref|YP_765753.1| recombination protein F [Rhizobium leguminosarum bv. viciae 3841]
 gi|123262032|sp|Q1MN15|RECF_RHIL3 RecName: Full=DNA replication and repair protein recF
 gi|115254563|emb|CAK05637.1| putative DNA replication and repair protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 374

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/369 (49%), Positives = 257/369 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA+  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYAAAALALDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +ET ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGAAGGFSIFAALDGMEGDVEIGTGIETGEETTARKLRINGTTAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL EG FD 
Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ LI E  +   FP   L L+GF+DG+F +  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIEETRETSPFPSASLQLSGFMDGQFSRPS 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+++YA  L + R  D+ + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ 
Sbjct: 241 VDLEDDYAAMLAESRYRDAGAGRTLEGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L +
Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRAMFSALGD 360

Query: 361 TAKFMRISN 369
            A+F  +++
Sbjct: 361 KAQFFTVAD 369


>gi|241207093|ref|YP_002978189.1| recombination protein F [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860983|gb|ACS58650.1| DNA replication and repair protein RecF [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 374

 Score =  401 bits (1031), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/369 (50%), Positives = 257/369 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA+  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYAAAALTLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +ET ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGAAGGFSIFAALDGMEGDVEIGTGIETSEETTARRLRINGTTAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL EG FD 
Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ LI E  +   FP   L L+GF+DG+F +  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIEETRESSPFPSAALQLSGFMDGQFSRPS 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+++YA  L + R  D+ + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ 
Sbjct: 241 VDLEDDYAAMLAESRYRDAGAGRTLEGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L +
Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQSFMTGTDRAMFAALGD 360

Query: 361 TAKFMRISN 369
            A+F  +S+
Sbjct: 361 RAQFFTVSD 369


>gi|190889810|ref|YP_001976352.1| DNA replication and repair protein [Rhizobium etli CIAT 652]
 gi|226737822|sp|B3PXG8|RECF_RHIE6 RecName: Full=DNA replication and repair protein recF
 gi|190695089|gb|ACE89174.1| DNA replication and repair protein [Rhizobium etli CIAT 652]
          Length = 374

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 183/369 (49%), Positives = 257/369 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA++ L  D +H +  G+NG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +E  ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGAAGGFSIFAALDGMEGEVEIGTGIEAGEETTTRKLRINGTPAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL EG FD 
Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ LI E  +   FP   L L+GF+DG+F +  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLARLIEERPESSPFPSASLQLSGFMDGQFSRPS 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L++EYA  L + R  D+ + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ 
Sbjct: 241 VDLEDEYAAMLAESRYRDASAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L +
Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDQTMFSALAD 360

Query: 361 TAKFMRISN 369
            A+F  +++
Sbjct: 361 RAQFFTVAD 369


>gi|209551663|ref|YP_002283580.1| recombination protein F [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226737823|sp|B5ZWP8|RECF_RHILW RecName: Full=DNA replication and repair protein recF
 gi|209537419|gb|ACI57354.1| DNA replication and repair protein RecF [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 374

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 184/369 (49%), Positives = 256/369 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA+  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYAAAALDLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +ET ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGAAGGFSIFAALDGMEGEVEIGTGIETGEETTARRLRINGTQAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL EG FD 
Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ LI E  +   FP   L L+GF+DG+F +  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIEETRETSPFPSASLQLSGFMDGQFTRPS 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L++EYA  L + R  D+ + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ 
Sbjct: 241 VDLEDEYAAMLSESRYRDAGAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L +
Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRAMFSALGD 360

Query: 361 TAKFMRISN 369
            A+   +++
Sbjct: 361 RAQVFTVAD 369


>gi|86355801|ref|YP_467693.1| recombination protein F [Rhizobium etli CFN 42]
 gi|123738428|sp|Q2KDX0|RECF_RHIEC RecName: Full=DNA replication and repair protein recF
 gi|86279903|gb|ABC88966.1| DNA replication and repair protein [Rhizobium etli CFN 42]
          Length = 374

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 181/369 (49%), Positives = 257/369 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA+  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYAAASLSLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +E  ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGAAGGFSIFAALDGMEGEVEIGTGIEAGEETTARRLRINGTPAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL+P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL +G FD 
Sbjct: 121 RLLWLIPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDDGRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ L  E ++   FP   L L+GF+DG+F +  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLTEETLESSPFPSASLQLSGFMDGQFSRPS 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+++Y   L + R  D+ + RTL GPHR+DL+V + +KA+  A  STGEQK +LVG+ 
Sbjct: 241 VDLEDDYRVMLAESRYRDAGAGRTLEGPHRTDLVVHHREKAMEAARCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE++R ALF I+  +G Q FMTGTD+ +F +L +
Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDENRRAALFDIIDGLGGQAFMTGTDRGMFTALGD 360

Query: 361 TAKFMRISN 369
            A+F  +++
Sbjct: 361 RAQFFTVAD 369


>gi|218515494|ref|ZP_03512334.1| recombination protein F [Rhizobium etli 8C-3]
          Length = 367

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/362 (50%), Positives = 253/362 (69%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +++FRNYA++ L  D +H +  G+NG GKTN++EA+S LSPGRG RRA+Y D+TR+G+
Sbjct: 3   LKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAAYGDITRVGA 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              FS FA ++GMEG  +I   +E  ++ + R L+IN    +  DEL  HLR+ WL P+M
Sbjct: 63  AGGFSIFAALDGMEGEVEIGTGIEAGEETTTRKLRINGKPAKTADELTDHLRLLWLTPAM 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           D +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL EG FD SW + IE Q
Sbjct: 123 DGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDPSWLAGIEEQ 182

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA LG+ + +AR EM+  L+ LI E  +   FP   L L+GF+DG+F +    L++EYA 
Sbjct: 183 MASLGIAMALARQEMLGLLARLIEERPESSPFPSASLQLSGFMDGQFSRPSVDLEDEYAA 242

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L + R  D+ + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ LAHARL+ N
Sbjct: 243 MLAESRYRDASAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGN 302

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
            TG APILLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L + A+F  +++
Sbjct: 303 LTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDQTMFSALADRAQFFTVAD 362

Query: 370 HQ 371
            +
Sbjct: 363 GK 364


>gi|327192780|gb|EGE59709.1| DNA replication and repair protein [Rhizobium etli CNPAF512]
          Length = 442

 Score =  395 bits (1014), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 182/369 (49%), Positives = 257/369 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA++ L  D +H +  G+NG GKTN++EA+S LSPGRG RRA+
Sbjct: 69  MPHKVSLSRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAA 128

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++G+EG  +I   +E  ++ + R L+IN    +  DEL  HL
Sbjct: 129 YGDITRVGAAGGFSIFAALDGIEGEVEIGTGIEAGEETTTRKLRINGTPAKTADELTDHL 188

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL EG FD 
Sbjct: 189 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 248

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ LI E  +   FP   L L+GF+DG+F +  
Sbjct: 249 SWLAGIEEQMASLGIAMALARQEMLGLLARLIEERPESSPFPSASLQLSGFMDGQFSRPS 308

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L++EYA  L + R  D+ + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ 
Sbjct: 309 VDLEDEYAAMLAESRYRDASAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 368

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L +
Sbjct: 369 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDQTMFSALAD 428

Query: 361 TAKFMRISN 369
            A+F  +++
Sbjct: 429 RAQFFTVAD 437


>gi|48527207|gb|AAT45744.1| RecF [Rhizobium etli]
          Length = 374

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/369 (48%), Positives = 256/369 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA+  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYAAASLSLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y  +TR+G+   FS FA ++GMEG  +I   +E  ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGHITRVGAAGGFSIFAALDGMEGEVEIGTGIEAGEETTARRLRINGTPAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL+P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL +G FD 
Sbjct: 121 RLLWLIPAMDGLFTGASSDRRRFLDRLVVSLDPAHGRRASDFERAMRSRNKLLDDGRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ L  E ++   FP   L L+GF+DG+F +  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLTEETLESSPFPSASLQLSGFMDGQFSRPS 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+++Y   L + R  D+ + RTL GPHR+DL+V + +KA+  A  STGEQK +LVG+ 
Sbjct: 241 VDLEDDYRVMLAESRYRDAGAGRTLEGPHRTDLVVHHREKAMEAARCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE++R ALF I+  +G Q FMTGTD+ +F +L +
Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDENRRAALFDIIDGLGGQAFMTGTDRGMFTALGD 360

Query: 361 TAKFMRISN 369
            A+F  +++
Sbjct: 361 RAQFFTVAD 369


>gi|25453250|sp|Q8UJ65|RECF_AGRT5 RecName: Full=DNA replication and repair protein recF
          Length = 376

 Score =  388 bits (997), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/370 (50%), Positives = 253/370 (68%), Gaps = 1/370 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           MTN++ +  L +++FRNYA+  LV D +H +  GDNG GKTN+LEA+SFLSPGRG RRA 
Sbjct: 2   MTNKVSLSRLKLTDFRNYAAAALVLDERHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAV 61

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +DVTR+G+  + FS FA V+GM+G   I   +E   +   R L++N   ++ VDEL  H
Sbjct: 62  LSDVTRVGAEATGFSIFADVDGMDGEVAIGTGIEGDGEVVSRRLRLNGTPVKSVDELTDH 121

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           LR+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFE+ MRGRNRLL+EG FD
Sbjct: 122 LRVLWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPGHGRRASDFEKAMRGRNRLLSEGRFD 181

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
             W   IE QMAELG+ + +AR EM+  L +LI        FP   LSL GF+D + ++ 
Sbjct: 182 PVWLDGIEKQMAELGISMAVARYEMLGLLKTLIEGRAGNAAFPSATLSLAGFMDDRLNRP 241

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L++EY   L DGR  D+ + RTL GPHR DL V + +K +     STGEQK +LVG+
Sbjct: 242 AVDLEDEYGLMLRDGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGL 301

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHA+L +N TG+AP+LLLDEI+AHLDE +R ALF ++  +G Q FMTGTD ++F +L 
Sbjct: 302 VLAHAQLTANMTGYAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALG 361

Query: 360 ETAKFMRISN 369
           E A+F  +S+
Sbjct: 362 ERAQFFNVSH 371


>gi|159184149|ref|NP_353107.2| recombination protein F [Agrobacterium tumefaciens str. C58]
 gi|159139484|gb|AAK85892.2| recF-like protein [Agrobacterium tumefaciens str. C58]
          Length = 375

 Score =  388 bits (996), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/370 (50%), Positives = 253/370 (68%), Gaps = 1/370 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           MTN++ +  L +++FRNYA+  LV D +H +  GDNG GKTN+LEA+SFLSPGRG RRA 
Sbjct: 1   MTNKVSLSRLKLTDFRNYAAAALVLDERHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAV 60

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +DVTR+G+  + FS FA V+GM+G   I   +E   +   R L++N   ++ VDEL  H
Sbjct: 61  LSDVTRVGAEATGFSIFADVDGMDGEVAIGTGIEGDGEVVSRRLRLNGTPVKSVDELTDH 120

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           LR+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFE+ MRGRNRLL+EG FD
Sbjct: 121 LRVLWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPGHGRRASDFEKAMRGRNRLLSEGRFD 180

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
             W   IE QMAELG+ + +AR EM+  L +LI        FP   LSL GF+D + ++ 
Sbjct: 181 PVWLDGIEKQMAELGISMAVARYEMLGLLKTLIEGRAGNAAFPSATLSLAGFMDDRLNRP 240

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L++EY   L DGR  D+ + RTL GPHR DL V + +K +     STGEQK +LVG+
Sbjct: 241 AVDLEDEYGLMLRDGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGL 300

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHA+L +N TG+AP+LLLDEI+AHLDE +R ALF ++  +G Q FMTGTD ++F +L 
Sbjct: 301 VLAHAQLTANMTGYAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALG 360

Query: 360 ETAKFMRISN 369
           E A+F  +S+
Sbjct: 361 ERAQFFNVSH 370


>gi|307319240|ref|ZP_07598669.1| DNA replication and repair protein RecF [Sinorhizobium meliloti
           AK83]
 gi|306895076|gb|EFN25833.1| DNA replication and repair protein RecF [Sinorhizobium meliloti
           AK83]
          Length = 374

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/369 (49%), Positives = 252/369 (68%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +S+FRNYA+L L  D +H +  G+NG GKTN++E +SFLSPGRG RRA+
Sbjct: 1   MPHKVFLTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R+G+P  FS FA V+GMEG  +I    +  ++   R L+IN    R VDEL  HL
Sbjct: 61  YADVARVGAPDGFSVFAAVDGMEGSVEIGTGTQGTEEGQSRRLRINGTAARTVDELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  +F+R MR RNRLL+E   D 
Sbjct: 121 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W S+IE +MA LG+ + +AR EM+  LS+L+        FP   LSL GFLD       
Sbjct: 181 AWLSAIEREMAGLGISMALARQEMLGLLSALVERSRSDGTFPSASLSLAGFLDDGAGIPA 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E Y   L +GR  D+ + RTL GPHRSDL++ + +K I     STGEQK +LVG+ 
Sbjct: 241 FELEERYLAMLAEGRARDAAAGRTLDGPHRSDLLIRHREKDIEAERCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF +V  +G Q FMTGTD+++FD+L E
Sbjct: 301 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDLVDGLGGQSFMTGTDRAMFDALGE 360

Query: 361 TAKFMRISN 369
            A+++ ++N
Sbjct: 361 RAQYLAVAN 369


>gi|15963941|ref|NP_384294.1| recombination protein F [Sinorhizobium meliloti 1021]
 gi|307306353|ref|ZP_07586097.1| DNA replication and repair protein RecF [Sinorhizobium meliloti
           BL225C]
 gi|8475781|sp|P56903|RECF_RHIME RecName: Full=DNA replication and repair protein recF
 gi|15073116|emb|CAC41575.1| DNA repair protein [Sinorhizobium meliloti 1021]
 gi|306902195|gb|EFN32792.1| DNA replication and repair protein RecF [Sinorhizobium meliloti
           BL225C]
          Length = 374

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/369 (49%), Positives = 252/369 (68%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +S+FRNYA+L L  D +H +  G+NG GKTN++E +SFLSPGRG RRA+
Sbjct: 1   MPHKVFLTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R+G+P  FS FA V+GMEG  +I    +  ++   R L+IN    R VDEL  HL
Sbjct: 61  YADVARVGAPDGFSVFAAVDGMEGSVEIGTGTQGTEEGQSRRLRINGTAARTVDELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  +F+R MR RNRLL+E   D 
Sbjct: 121 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W S+IE +MA LG+ + +AR EM+  LS+L+        FP   LSL GFLD       
Sbjct: 181 AWLSAIEREMAGLGISMALARQEMLGLLSALVERSRSDGTFPSASLSLAGFLDDCAGIPA 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E Y   L +GR  D+ + RTL GPHRSDL++ + +K I     STGEQK +LVG+ 
Sbjct: 241 FELEERYLAMLAEGRARDAAAGRTLDGPHRSDLLIRHREKDIEAERCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF +V  +G Q FMTGTD+++FD+L E
Sbjct: 301 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDLVDGLGGQSFMTGTDRAMFDALGE 360

Query: 361 TAKFMRISN 369
            A+++ ++N
Sbjct: 361 RAQYLAVAN 369


>gi|218674981|ref|ZP_03524650.1| recombination protein F [Rhizobium etli GR56]
          Length = 354

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/351 (50%), Positives = 243/351 (69%)

Query: 21  LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVE 80
           + L  D +H +  G+NG GKTN++EA+S LSPGRG RRA+Y D+TR+G+   FS FA ++
Sbjct: 1   MSLTLDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAAYGDITRVGATGGFSIFAALD 60

Query: 81  GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMER 140
           GMEG  +I   +E  ++ + R L+IN    +  DEL  HLR+ WL P+MD +F+G S +R
Sbjct: 61  GMEGEVEIGTGIEAGEETTTRRLRINGTAAKTADELTDHLRLLWLTPAMDGLFTGASSDR 120

Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
           RRFLDR+V ++DP H RR  DFER MR RN+LL EG FD SW + IE QMA LG+ + +A
Sbjct: 121 RRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDPSWLAGIEEQMASLGIAMALA 180

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           R EM+  L+ LI E  +   FP   L L+GF+DG+F +    L++EYA  L + R  D+ 
Sbjct: 181 RQEMLGLLTRLIEERPENSPFPSASLQLSGFMDGQFSRPSVDLEDEYAAMLAESRYRDAG 240

Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
           + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ LAHARL+ N TG APILLLD
Sbjct: 241 AGRTLEGPHRADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGNLTGHAPILLLD 300

Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371
           EI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L + A+F  +++ +
Sbjct: 301 EIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRTMFSALADRAQFFTVADGK 351


>gi|325291519|ref|YP_004277383.1| recombination protein F [Agrobacterium sp. H13-3]
 gi|325059372|gb|ADY63063.1| recombination protein F [Agrobacterium sp. H13-3]
          Length = 375

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/370 (49%), Positives = 252/370 (68%), Gaps = 1/370 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           MTN++ +  L +++FRNYA+  L  D +H +  GDNG GKTN+LEA+SFLSPGRG RRA+
Sbjct: 1   MTNKVSLLRLKLTDFRNYAAASLALDDRHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAT 60

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +DVTR+G+  + FS FA V+GM+G   I   +E   +   R L++N   ++ VDEL  H
Sbjct: 61  LSDVTRVGAEAAGFSIFADVDGMDGEVAIGTGIEGDGEVVSRRLRLNGTSVKSVDELTDH 120

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           LR+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFE+ MRGRNRLL+EG FD
Sbjct: 121 LRVLWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPAHGRRASDFEKAMRGRNRLLSEGRFD 180

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
             W   IE QMAELG+ + +AR EM+  L SLI        FP   L+L+GF+D   ++ 
Sbjct: 181 PVWLDGIEKQMAELGISMALARYEMLGLLKSLIEGRSGNAAFPSAALALSGFMDDTLNRP 240

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L++EY   L +GR  D+ + RTL GPHR DL V + +K +     STGEQK +LVG+
Sbjct: 241 AVDLEDEYRLTLREGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGL 300

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHA+L +N TG AP+LLLDEI+AHLDE +R ALF ++  +G Q FMTGTD ++F +L 
Sbjct: 301 VLAHAQLTANMTGHAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALG 360

Query: 360 ETAKFMRISN 369
           + A+F  +S+
Sbjct: 361 DRAQFFNVSH 370


>gi|222147250|ref|YP_002548207.1| recombination protein F [Agrobacterium vitis S4]
 gi|259563353|sp|B9JZ91|RECF_AGRVS RecName: Full=DNA replication and repair protein recF
 gi|221734240|gb|ACM35203.1| DNA replication and repair protein [Agrobacterium vitis S4]
          Length = 374

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/369 (49%), Positives = 248/369 (67%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  +  I  L +++FRNY S  L  D +H +  G+NG GKTN++EA+SFLSPGRG RRA 
Sbjct: 1   MAEKTFINRLQLTDFRNYGSASLRLDGRHVVLTGNNGSGKTNLMEAVSFLSPGRGLRRAV 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            +DV R G+ S FS FA +EGM G  ++    E  D+ +VR L+IN   +R VDEL  HL
Sbjct: 61  LSDVARAGAASGFSIFASLEGMAGDVELGTGSEVLDETAVRRLRINGASVRSVDELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S ERRRFLDR+V +IDP+H RR  DFER MR RN+LL+EG FD+
Sbjct: 121 RVLWLTPAMDGLFTGSSSERRRFLDRLVLSIDPQHGRRASDFERAMRSRNKLLSEGRFDA 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L++LI +  + E FP   L L+GF+D     + 
Sbjct: 181 SWLAGIEQQMAALGIAMALARQEMMRLLAALIEQRREPETFPGADLMLSGFMDEHAGTAA 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L++ Y   L   R  D+ + RTL GPHRSDL+V + +K +     STGEQK +L+G+ 
Sbjct: 241 IDLEDTYRDSLAGSRGRDAAAGRTLEGPHRSDLLVRHREKDMEAERCSTGEQKALLIGLI 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHA L++  TGFAPILLLDEI+AHLDE +R ALF  +  +G Q FMTGTD  +F SL +
Sbjct: 301 LAHAELVATMTGFAPILLLDEIAAHLDEGRRAALFDRIDVLGGQAFMTGTDAQMFASLGD 360

Query: 361 TAKFMRISN 369
            A+F+ + +
Sbjct: 361 RAQFVTVDD 369


>gi|227824004|ref|YP_002827977.1| recombination protein F [Sinorhizobium fredii NGR234]
 gi|227343006|gb|ACP27224.1| DNA replication and repair protein, RecF [Sinorhizobium fredii
           NGR234]
          Length = 470

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/369 (49%), Positives = 253/369 (68%), Gaps = 1/369 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA+L L  D +H +  G+NG GKTN++EAISFLSPGRG RRA+
Sbjct: 98  MPHKVSLTRLKLTDFRNYAALSLELDQRHVVLTGENGAGKTNLMEAISFLSPGRGLRRAA 157

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R+G+   FS FA VEGM+G  +I       ++   R L++N    R VDEL  HL
Sbjct: 158 YADVARVGATDGFSVFAAVEGMDGPVEIGTGTAGAEEGQSRRLRLNGTPARTVDELTDHL 217

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  +F+R MR RNRLL+E   D 
Sbjct: 218 RVLWLTPAMDGLFTGPSSDRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 277

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W ++IE +MA LGV + +AR+EM+  L++L+ E  Q  +FP   LSL GFLD       
Sbjct: 278 AWLTAIEREMAGLGVSMALARLEMLGLLTALV-ERSQGGSFPSAGLSLAGFLDDCHGLPA 336

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E Y   L DGR  D+ + RTL GPHRSDL++ + +K +     STGEQK +LVG+ 
Sbjct: 337 YDLEERYLAMLSDGRGRDAAAGRTLDGPHRSDLLIRHREKDMEAERCSTGEQKALLVGLV 396

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF  V ++G Q FMTGTD+++F +L E
Sbjct: 397 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDRVDELGGQAFMTGTDRAMFTALGE 456

Query: 361 TAKFMRISN 369
            A ++ ++N
Sbjct: 457 RACYLTVAN 465


>gi|150398584|ref|YP_001329051.1| recombination protein F [Sinorhizobium medicae WSM419]
 gi|150030099|gb|ABR62216.1| DNA replication and repair protein RecF [Sinorhizobium medicae
           WSM419]
          Length = 409

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 184/369 (49%), Positives = 252/369 (68%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +S+FRNYA+  L  D +H +  G+NG GKTN++EAISFLSPGRG RRA+
Sbjct: 36  MPHKVFLTRLKLSDFRNYATAALDLDQRHVVLTGENGAGKTNLMEAISFLSPGRGLRRAA 95

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R+G+   FS FA V+GMEG  +I    +  ++   R L+IN    R VDELN HL
Sbjct: 96  YADVVRVGAADGFSVFAAVDGMEGPVEIGTGTQGSEEGHSRRLRINGTAARTVDELNDHL 155

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  +F+R MR RNRLL+E   D 
Sbjct: 156 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 215

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W S+IE +MA LG+ + +AR EM+  LS+L+        FP  +LSL GFLD       
Sbjct: 216 AWVSAIEREMAGLGISMALARQEMLGLLSALVDRSRTDGTFPSARLSLAGFLDDCAGIPA 275

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E Y   L DGR  D+ + RTL GPHRSDL++ + +K I     STGEQK +LVG+ 
Sbjct: 276 FELEERYLAMLADGRARDAAAGRTLDGPHRSDLLIRHREKDIEAERCSTGEQKALLVGLV 335

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF +V  +G Q FMTGTD+++F++L E
Sbjct: 336 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDLVDGLGGQAFMTGTDQTMFEALGE 395

Query: 361 TAKFMRISN 369
            A ++ ++N
Sbjct: 396 RAHYLAVAN 404


>gi|163757765|ref|ZP_02164854.1| putative DNA replication and repair protein [Hoeflea phototrophica
           DFL-43]
 gi|162285267|gb|EDQ35549.1| putative DNA replication and repair protein [Hoeflea phototrophica
           DFL-43]
          Length = 382

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 172/374 (45%), Positives = 245/374 (65%), Gaps = 2/374 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ I+ L ++ FRNYAS  L  DA+H + VGDNG GKTN++EA+S LSPGRG RRA 
Sbjct: 1   MAQKVHIERLKLTGFRNYASQSLELDARHVVLVGDNGAGKTNLMEAVSLLSPGRGMRRAP 60

Query: 61  YADVTRIGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           Y+DV + GS   S FS FA +EGM G  DI   ++  ++   R ++IN    R  D++ +
Sbjct: 61  YSDVIKAGSEPASGFSIFASLEGMAGPVDIGTGVDGLEESGARKVRINGSPARSADDMLE 120

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           HLR+ WL PSMD +F+G + +RRRFLDR+V ++DP H  R + +ER MR RNRLL+EG  
Sbjct: 121 HLRLLWLTPSMDGLFTGSAGDRRRFLDRLVLSVDPAHGSRALSYERAMRSRNRLLSEGRA 180

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D +W   +EAQM+ELGV + +AR E++  LS+LI +   +  FP   + L GFL+ +  +
Sbjct: 181 DPTWLDGLEAQMSELGVAMAMARSEVVRLLSALIDDSQAESPFPAASVRLEGFLEDEGLE 240

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   ++  +   +  GR  D+ + RTL GPHR DL+V +  KA+  A  STGEQK +L+G
Sbjct: 241 TASDMEVAFIDLMKHGRGRDAAAGRTLSGPHRMDLVVHHRAKAMPAALSSTGEQKALLIG 300

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           I L HA+L+ + TG APILLLDE++AHLDE +R ALF ++  +  Q FMTGTD ++F SL
Sbjct: 301 IILGHAQLVRSLTGHAPILLLDEVAAHLDEGRRAALFDLIETLDCQAFMTGTDAAMFGSL 360

Query: 359 NETAKFMRISNHQA 372
               +   +S  +A
Sbjct: 361 GPRGQMFEVSEGRA 374


>gi|260461963|ref|ZP_05810208.1| DNA replication and repair protein RecF [Mesorhizobium
           opportunistum WSM2075]
 gi|259032210|gb|EEW33476.1| DNA replication and repair protein RecF [Mesorhizobium
           opportunistum WSM2075]
          Length = 377

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 170/370 (45%), Positives = 232/370 (62%), Gaps = 1/370 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  +  I  L ++ FRNYA+L +       +F GDNG GKTN+LEAISFL+PGRG RRA 
Sbjct: 1   MPGQTHISKLTLTNFRNYAALAIDLAPGAVVFSGDNGAGKTNLLEAISFLTPGRGLRRAP 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R G    F+  AR++G +G  +I   +   D    R ++IN    R  +++ + L
Sbjct: 61  YADVARAGGDGGFALHARLDGPDGQVEIGTGISGGDSEGGRRVRINGATARSAEDMLEWL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G + +RRRFLDR+V AIDP H +R +D+E+ MRGRNRLLTE   D 
Sbjct: 121 RVVWLTPAMDTLFTGPAADRRRFLDRLVLAIDPGHGQRALDYEKAMRGRNRLLTENSRDD 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            W  +IE QMAE GV I  AR EM+  L+++I        FP   + L G L+ +   + 
Sbjct: 181 RWFEAIEIQMAETGVAIAAARAEMVRLLAAMIDRLPDSGPFPQADIGLAGDLEAEIAGTP 240

Query: 241 CA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++E + + L DGR  D  + RTL GPHRSDL+V +  KA+     STGEQK +LVGI
Sbjct: 241 AVDVEERFRRALADGRDRDRAAGRTLEGPHRSDLLVRHRPKAMPAELCSTGEQKALLVGI 300

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L+HARL    +G  PILLLDEI+AHLD  +R ALF I+ ++  Q FMTGTD ++F SL 
Sbjct: 301 VLSHARLTGEVSGMTPILLLDEIAAHLDGGRRAALFSILEELNCQAFMTGTDAALFSSLQ 360

Query: 360 ETAKFMRISN 369
             A+F+ + +
Sbjct: 361 GRAQFLTVDH 370


>gi|13474646|ref|NP_106215.1| recombination protein F [Mesorhizobium loti MAFF303099]
 gi|20978640|sp|Q98BH1|RECF_RHILO RecName: Full=DNA replication and repair protein recF
 gi|14025401|dbj|BAB52001.1| RecF protein [Mesorhizobium loti MAFF303099]
          Length = 379

 Score =  334 bits (856), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 167/370 (45%), Positives = 233/370 (62%), Gaps = 1/370 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  +  I  L ++ FRNYA+L +       +F GDNG GKTN+LEAIS L+PGRG RRA 
Sbjct: 1   MPAQTHISKLTLTNFRNYAALAIDLAPGAVVFSGDNGAGKTNLLEAISLLTPGRGLRRAP 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R G    F+  AR++G +G  +I   +   +    R ++IN    R  +++ + L
Sbjct: 61  YADVAREGGDGGFALHARLDGPDGQVEIGTGISVGEGEGGRRVRINGATARSAEDMLEWL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G + +RRRFLDR+V AIDP H +R +D+E+ MRGRNRLLT+G  D 
Sbjct: 121 RVVWLTPAMDALFTGPAADRRRFLDRLVLAIDPGHGQRALDYEKAMRGRNRLLTDGSRDD 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            W  +IE QMAE GV I  AR E++  L+++I        FP   +SL+G L+ +   + 
Sbjct: 181 RWFEAIETQMAETGVAIAAARAELVRLLAAMIDRLPDTGPFPQADISLSGDLEAEVSSAP 240

Query: 241 CA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++E + + L  GR  D  + RTL GPHRSDL+V +  KA+     STGEQK +LVGI
Sbjct: 241 AVDVEERFRRALAGGRDRDRAAGRTLEGPHRSDLLVRHRPKAMPAELCSTGEQKALLVGI 300

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L+HARL    +G  PILLLDEI+AHLD  +R ALF I+ ++  Q FMTGTD ++F SL 
Sbjct: 301 VLSHARLTGEMSGMTPILLLDEIAAHLDGGRRAALFSILEELNCQAFMTGTDAALFSSLM 360

Query: 360 ETAKFMRISN 369
             A+F+ + +
Sbjct: 361 GRAQFLTVDH 370


>gi|319779752|ref|YP_004139228.1| DNA replication and repair protein RecF [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317165640|gb|ADV09178.1| DNA replication and repair protein RecF [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 381

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 170/372 (45%), Positives = 234/372 (62%), Gaps = 3/372 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  +  I  L ++ FRNYA+L +       +F GDNG GKTN+LEAISFL+PGRG RRA 
Sbjct: 1   MPAQNHISKLTLTNFRNYAALTIDLAPGAVVFSGDNGAGKTNLLEAISFLTPGRGLRRAP 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD--DRSVRCLQINDVVIRVVDELNK 118
           YADV R G    F+  AR++G +G  +I   +   D      R ++IN    R  +++ +
Sbjct: 61  YADVAREGGDGGFALHARLDGPDGQVEIGTGISGGDTAGEGGRRVRINGASARSAEDMLE 120

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            LR+ WL P+MD +F+G + +RRRFLDR+V AIDP H +R ID+E+ MRGRNRLLTE   
Sbjct: 121 WLRVVWLTPAMDALFTGPAADRRRFLDRLVLAIDPGHGQRAIDYEKAMRGRNRLLTESSR 180

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D  W  +IE QMAE GV I  AR EM+  L+++I        FP   + L+G L+ +   
Sbjct: 181 DDRWFDAIETQMAETGVAIAAARAEMVRLLAAMIDRLPDTGPFPQADIGLSGELEAEIAV 240

Query: 239 SFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    ++E + + L +GR+ D  + RTL GPHRSDL+V +  KA+     STGEQK +LV
Sbjct: 241 APAVDVEERFRRTLAEGRERDRAAGRTLDGPHRSDLVVRHRPKAMPAELCSTGEQKALLV 300

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           GI L+HARL    +G  PILLLDEI+AHLD  +R ALF I+ ++  Q FMTGTD ++F S
Sbjct: 301 GIVLSHARLTGEMSGMTPILLLDEIAAHLDSGRRAALFSILEELNCQAFMTGTDAALFSS 360

Query: 358 LNETAKFMRISN 369
           L   A+F+ + +
Sbjct: 361 LQGRAQFLTVDH 372


>gi|225626554|ref|ZP_03784593.1| DNA replication and repair protein RecF [Brucella ceti str. Cudo]
 gi|260169593|ref|ZP_05756404.1| recombination protein F [Brucella sp. F5/99]
 gi|261759119|ref|ZP_06002828.1| DNA replication and repair protein recF [Brucella sp. F5/99]
 gi|225618211|gb|EEH15254.1| DNA replication and repair protein RecF [Brucella ceti str. Cudo]
 gi|261739103|gb|EEY27099.1| DNA replication and repair protein recF [Brucella sp. F5/99]
          Length = 384

 Score =  318 bits (815), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 168/371 (45%), Positives = 235/371 (63%), Gaps = 4/371 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y 
Sbjct: 12  DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71

Query: 63  DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           DV R  +   F+  A ++ M  G A+I            R ++IN +     D+L  + R
Sbjct: 72  DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARTQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|294851413|ref|ZP_06792086.1| DNA replication and repair protein recF [Brucella sp. NVSL 07-0026]
 gi|294820002|gb|EFG37001.1| DNA replication and repair protein recF [Brucella sp. NVSL 07-0026]
          Length = 384

 Score =  317 bits (811), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 168/371 (45%), Positives = 234/371 (63%), Gaps = 4/371 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y 
Sbjct: 12  DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71

Query: 63  DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           DV R  +   F+  A ++ M  G A+I            R + IN +     D+L  + R
Sbjct: 72  DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVCINGIAASA-DDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIVAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|110632365|ref|YP_672573.1| recombination protein F [Mesorhizobium sp. BNC1]
 gi|110283349|gb|ABG61408.1| DNA replication and repair protein RecF [Chelativorans sp. BNC1]
          Length = 391

 Score =  316 bits (809), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 166/370 (44%), Positives = 225/370 (60%), Gaps = 4/370 (1%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++ I  L +S FRNYASL L       +  G+NG GKTN+LEAISFLSPGRG RRA+  +
Sbjct: 16  QVHIAKLTLSNFRNYASLSLGLQPGAVVLTGENGAGKTNLLEAISFLSPGRGLRRATLEE 75

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             RIGS   F+  A VEG  G   I   +         S R ++I+    R  + +   L
Sbjct: 76  AMRIGSSDGFAVHAEVEGPYGSCRIGTGTAGTAAEGSESGRRVRIDGEPQRSAEAMLDWL 135

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V AIDP H RR  D+E+ MR RNRL  +   D 
Sbjct: 136 RVIWLTPAMDALFTGASADRRRFLDRLVLAIDPAHGRRAADYEKAMRSRNRLFADDVRDD 195

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W  +IE QMAE GV I  AR EM+  L+++I        FP   L+L G +D    ++ 
Sbjct: 196 AWFDAIEMQMAETGVAIAAARAEMLRLLAAMIERLPAGSPFPKALLALEGTVDEAIARNP 255

Query: 241 CA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++E++  +L + R  D  + R L GPHRS+L+V +  K +     STGEQK +LVG+
Sbjct: 256 AVEVEEDFRTRLREERPRDRAAGRALEGPHRSELLVRHAPKDMPAESCSTGEQKALLVGL 315

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHARL +  +G APILLLDEISAH D D+R ALF I+ D+  Q FMTGT++++F SL 
Sbjct: 316 VLAHARLTAELSGMAPILLLDEISAHFDADRRAALFDILEDLNCQAFMTGTERALFSSLE 375

Query: 360 ETAKFMRISN 369
             A+F+ +S 
Sbjct: 376 GRAQFLAVSG 385


>gi|114704369|ref|ZP_01437277.1| DNA replication and repair protein [Fulvimarina pelagi HTCC2506]
 gi|114539154|gb|EAU42274.1| DNA replication and repair protein [Fulvimarina pelagi HTCC2506]
          Length = 385

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 167/372 (44%), Positives = 234/372 (62%), Gaps = 4/372 (1%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  + +I  L + +FRNY  L L F  +  +F G NG GKTN+LEA+S LSPGRG RRA 
Sbjct: 6   MGRQSEIGHLRLFDFRNYELLDLSFQKRFVVFAGPNGAGKTNLLEALSLLSPGRGLRRAP 65

Query: 61  YADVTRIGSPSFFSTFA--RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           Y ++ R G+ S FS  A  R+   E     S++L+     S R ++I++   +  +EL  
Sbjct: 66  YGEMARQGTQSGFSVKASVRIASEETTVVTSVRLDGEGPNS-RLVRIDETQAKSAEELLD 124

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
             RI WL P+MD +F+G + +RRRFLDRMV +IDP H RR  DFER MR RN+LL++   
Sbjct: 125 IARIVWLTPAMDGLFTGPAGDRRRFLDRMVLSIDPTHGRRASDFERAMRSRNKLLSDNRI 184

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFD 237
           D  W + IE QMAELGV + +AR E++  L++ I        FP   L L+ GF +G  D
Sbjct: 185 DDRWLAGIEMQMAELGVAMAVARNELVANLTNAIALADPDLPFPKAGLVLSPGFEEGGLD 244

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                +++ Y ++L   R  D+ + RTL GPHR+DL V +  K +     STGEQK +LV
Sbjct: 245 GPAVQVEDRYRERLARDRYRDAGAGRTLEGPHRADLEVTHLAKHMPAGLSSTGEQKALLV 304

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           G+ +AHARL S  +G APILLLDEI+AHLD  +R +LF +V D+G Q FMTGTD+S+F++
Sbjct: 305 GLIIAHARLTSVLSGMAPILLLDEIAAHLDARRRASLFDLVGDLGGQTFMTGTDESLFEA 364

Query: 358 LNETAKFMRISN 369
           L + A+ + I++
Sbjct: 365 LGDRAQIITIAD 376


>gi|254718227|ref|ZP_05180038.1| recombination protein F [Brucella sp. 83/13]
 gi|265983183|ref|ZP_06095918.1| DNA replication and repair protein recF [Brucella sp. 83/13]
 gi|306839967|ref|ZP_07472761.1| DNA replication and repair protein RecF [Brucella sp. NF 2653]
 gi|264661775|gb|EEZ32036.1| DNA replication and repair protein recF [Brucella sp. 83/13]
 gi|306404931|gb|EFM61216.1| DNA replication and repair protein RecF [Brucella sp. NF 2653]
          Length = 384

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 168/372 (45%), Positives = 236/372 (63%), Gaps = 4/372 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            DV R  +   F+  A ++ M  G A+I            R ++IN +     D+L  + 
Sbjct: 71  DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYA 128

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           RI W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D 
Sbjct: 129 RILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDD 188

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
            W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++
Sbjct: 189 QWLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEA 248

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L+E++ + L DGR  D ++ RTL GPHR+DLIV +  K++  A  STGEQK +L+G+
Sbjct: 249 ALDLEEDFRRSLRDGRARDRVAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGL 308

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L 
Sbjct: 309 ILAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALA 368

Query: 360 ETAKFMRISNHQ 371
             A+F  +S  Q
Sbjct: 369 GDAQFFNVSAGQ 380


>gi|148560734|ref|YP_001258052.1| recombination protein F [Brucella ovis ATCC 25840]
 gi|148371991|gb|ABQ61970.1| recF protein [Brucella ovis ATCC 25840]
          Length = 384

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 168/371 (45%), Positives = 236/371 (63%), Gaps = 4/371 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y 
Sbjct: 12  DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71

Query: 63  DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           DV R  +   F+  A ++ M  G A+I            R ++IN +     D+L  + R
Sbjct: 72  DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMDR+F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDRLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q F+TGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFITGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|254694809|ref|ZP_05156637.1| recombination protein F [Brucella abortus bv. 3 str. Tulya]
 gi|261215134|ref|ZP_05929415.1| DNA replication and repair protein recF [Brucella abortus bv. 3
           str. Tulya]
 gi|260916741|gb|EEX83602.1| DNA replication and repair protein recF [Brucella abortus bv. 3
           str. Tulya]
          Length = 384

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 169/371 (45%), Positives = 235/371 (63%), Gaps = 4/371 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y 
Sbjct: 12  DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71

Query: 63  DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           DV R  +   FS  A ++ M  G A+I            R ++IN +     D+L  + R
Sbjct: 72  DVARANAEGGFSIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINRIAASA-DDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|239830849|ref|ZP_04679178.1| DNA replication and repair protein RecF [Ochrobactrum intermedium
           LMG 3301]
 gi|239823116|gb|EEQ94684.1| DNA replication and repair protein RecF [Ochrobactrum intermedium
           LMG 3301]
          Length = 384

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 168/368 (45%), Positives = 236/368 (64%), Gaps = 4/368 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EA+SFLSPGRG RRA+Y 
Sbjct: 12  DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAVSFLSPGRGLRRAAYD 71

Query: 63  DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           DV R  S   F+  A ++ M  G A+I            R ++IN +     D+L  + R
Sbjct: 72  DVARTSSLDGFAIHAALDCMIYGEAEIGTGTAGGG-EGGRKVRINGIAASG-DDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+ER MR RNRLL++G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYERAMRSRNRLLSDGNGDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE+QMAELG  I  AR E +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIESQMAELGTAIAAARAEAMRLIAAMIERLPAEGPFPKADCFLEGTLEQRISVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  KA+  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLEGPHRTDLIVQHRPKAMPAALCSTGEQKALLIGLV 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++F++L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDTGRRAALFGILNELGGQAFMTGTDRALFEALEG 369

Query: 361 TAKFMRIS 368
            A+F  ++
Sbjct: 370 EAQFFNVA 377


>gi|23500919|ref|NP_697046.1| recombination protein F [Brucella suis 1330]
 gi|161617994|ref|YP_001591881.1| recombination protein F [Brucella canis ATCC 23365]
 gi|163842280|ref|YP_001626684.1| recombination protein F [Brucella suis ATCC 23445]
 gi|254705188|ref|ZP_05167016.1| recombination protein F [Brucella suis bv. 3 str. 686]
 gi|254707296|ref|ZP_05169124.1| recombination protein F [Brucella pinnipedialis M163/99/10]
 gi|254709165|ref|ZP_05170976.1| recombination protein F [Brucella pinnipedialis B2/94]
 gi|256030689|ref|ZP_05444303.1| recombination protein F [Brucella pinnipedialis M292/94/1]
 gi|256158693|ref|ZP_05456572.1| recombination protein F [Brucella ceti M490/95/1]
 gi|256254094|ref|ZP_05459630.1| recombination protein F [Brucella ceti B1/94]
 gi|256368468|ref|YP_003105974.1| recombination protein F [Brucella microti CCM 4915]
 gi|260567346|ref|ZP_05837816.1| DNA replication and repair protein recF [Brucella suis bv. 4 str.
           40]
 gi|261221234|ref|ZP_05935515.1| DNA replication and repair protein recF [Brucella ceti B1/94]
 gi|261314777|ref|ZP_05953974.1| DNA replication and repair protein recF [Brucella pinnipedialis
           M163/99/10]
 gi|261316662|ref|ZP_05955859.1| DNA replication and repair protein recF [Brucella pinnipedialis
           B2/94]
 gi|261755892|ref|ZP_05999601.1| DNA replication and repair protein recF [Brucella suis bv. 3 str.
           686]
 gi|265987734|ref|ZP_06100291.1| DNA replication and repair protein recF [Brucella pinnipedialis
           M292/94/1]
 gi|265997195|ref|ZP_06109752.1| DNA replication and repair protein recF [Brucella ceti M490/95/1]
 gi|306843605|ref|ZP_07476206.1| DNA replication and repair protein RecF [Brucella sp. BO1]
 gi|38258604|sp|Q8G3E5|RECF_BRUSU RecName: Full=DNA replication and repair protein recF
 gi|23346772|gb|AAN28961.1| recF protein [Brucella suis 1330]
 gi|161334805|gb|ABX61110.1| DNA replication and repair protein RecF [Brucella canis ATCC 23365]
 gi|163673003|gb|ABY37114.1| DNA replication and repair protein RecF [Brucella suis ATCC 23445]
 gi|255998626|gb|ACU47025.1| recombination protein F [Brucella microti CCM 4915]
 gi|260156864|gb|EEW91944.1| DNA replication and repair protein recF [Brucella suis bv. 4 str.
           40]
 gi|260919818|gb|EEX86471.1| DNA replication and repair protein recF [Brucella ceti B1/94]
 gi|261295885|gb|EEX99381.1| DNA replication and repair protein recF [Brucella pinnipedialis
           B2/94]
 gi|261303803|gb|EEY07300.1| DNA replication and repair protein recF [Brucella pinnipedialis
           M163/99/10]
 gi|261745645|gb|EEY33571.1| DNA replication and repair protein recF [Brucella suis bv. 3 str.
           686]
 gi|262551663|gb|EEZ07653.1| DNA replication and repair protein recF [Brucella ceti M490/95/1]
 gi|264659931|gb|EEZ30192.1| DNA replication and repair protein recF [Brucella pinnipedialis
           M292/94/1]
 gi|306276296|gb|EFM57996.1| DNA replication and repair protein RecF [Brucella sp. BO1]
          Length = 384

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 168/371 (45%), Positives = 235/371 (63%), Gaps = 4/371 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y 
Sbjct: 12  DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71

Query: 63  DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           DV R  +   F+  A ++ M  G A+I            R ++IN +     D+L  + R
Sbjct: 72  DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|306842702|ref|ZP_07475345.1| DNA replication and repair protein RecF [Brucella sp. BO2]
 gi|306287148|gb|EFM58650.1| DNA replication and repair protein RecF [Brucella sp. BO2]
          Length = 384

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 168/372 (45%), Positives = 235/372 (63%), Gaps = 4/372 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            DV R  +   F+  A ++ M  G A+I            R ++IN +     D+L  + 
Sbjct: 71  DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYA 128

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           RI W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D 
Sbjct: 129 RILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDD 188

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
            W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++
Sbjct: 189 QWLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEA 248

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+
Sbjct: 249 ALDLEEDFRRSLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGL 308

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L 
Sbjct: 309 ILAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALA 368

Query: 360 ETAKFMRISNHQ 371
             A+F  +S  Q
Sbjct: 369 GDAQFFNVSAGQ 380


>gi|256060148|ref|ZP_05450330.1| recombination protein F [Brucella neotomae 5K33]
 gi|261324125|ref|ZP_05963322.1| DNA replication and repair protein recF [Brucella neotomae 5K33]
 gi|261300105|gb|EEY03602.1| DNA replication and repair protein recF [Brucella neotomae 5K33]
          Length = 384

 Score =  309 bits (792), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 168/371 (45%), Positives = 235/371 (63%), Gaps = 4/371 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y 
Sbjct: 12  DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71

Query: 63  DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           DV R  +   F+  A ++ M  G A+I            R ++IN +     D+L  + R
Sbjct: 72  DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|17988224|ref|NP_540858.1| recombination protein F [Brucella melitensis bv. 1 str. 16M]
 gi|62288994|ref|YP_220787.1| recombination protein F [Brucella abortus bv. 1 str. 9-941]
 gi|82698935|ref|YP_413509.1| recombination protein F [Brucella melitensis biovar Abortus 2308]
 gi|189023271|ref|YP_001934039.1| recombination protein F [Brucella abortus S19]
 gi|225851549|ref|YP_002731782.1| recombination protein F [Brucella melitensis ATCC 23457]
 gi|237814484|ref|ZP_04593482.1| DNA replication and repair protein RecF [Brucella abortus str. 2308
           A]
 gi|254690320|ref|ZP_05153574.1| recombination protein F [Brucella abortus bv. 6 str. 870]
 gi|254696437|ref|ZP_05158265.1| recombination protein F [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731349|ref|ZP_05189927.1| recombination protein F [Brucella abortus bv. 4 str. 292]
 gi|256045793|ref|ZP_05448671.1| recombination protein F [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112512|ref|ZP_05453433.1| recombination protein F [Brucella melitensis bv. 3 str. Ether]
 gi|256258574|ref|ZP_05464110.1| recombination protein F [Brucella abortus bv. 9 str. C68]
 gi|256264942|ref|ZP_05467474.1| recombination protein F [Brucella melitensis bv. 2 str. 63/9]
 gi|260546288|ref|ZP_05822028.1| recombination protein F [Brucella abortus NCTC 8038]
 gi|260563086|ref|ZP_05833572.1| recombination protein F [Brucella melitensis bv. 1 str. 16M]
 gi|260755859|ref|ZP_05868207.1| DNA replication and repair protein recF [Brucella abortus bv. 6
           str. 870]
 gi|260759082|ref|ZP_05871430.1| DNA replication and repair protein recF [Brucella abortus bv. 4
           str. 292]
 gi|260760808|ref|ZP_05873151.1| DNA replication and repair protein recF [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884884|ref|ZP_05896498.1| DNA replication and repair protein recF [Brucella abortus bv. 9
           str. C68]
 gi|265992208|ref|ZP_06104765.1| DNA replication and repair protein recF [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993948|ref|ZP_06106505.1| DNA replication and repair protein recF [Brucella melitensis bv. 3
           str. Ether]
 gi|297247411|ref|ZP_06931129.1| DNA replication and repair protein recF [Brucella abortus bv. 5
           str. B3196]
 gi|20978586|sp|Q8YED7|RECF_BRUME RecName: Full=DNA replication and repair protein recF
 gi|81309491|sp|Q57G08|RECF_BRUAB RecName: Full=DNA replication and repair protein recF
 gi|97180679|sp|Q2YPM3|RECF_BRUA2 RecName: Full=DNA replication and repair protein recF
 gi|17983989|gb|AAL53122.1| recf protein [Brucella melitensis bv. 1 str. 16M]
 gi|62195126|gb|AAX73426.1| RecF, recF protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615036|emb|CAJ09959.1| RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde
           dehydrogenase:SMC protein, N-terminal:AAA ATPase
           [Brucella melitensis biovar Abortus 2308]
 gi|189018843|gb|ACD71565.1| recombination protein F [Brucella abortus S19]
 gi|225639914|gb|ACN99827.1| DNA replication and repair protein RecF [Brucella melitensis ATCC
           23457]
 gi|237789321|gb|EEP63531.1| DNA replication and repair protein RecF [Brucella abortus str. 2308
           A]
 gi|260096395|gb|EEW80271.1| recombination protein F [Brucella abortus NCTC 8038]
 gi|260153102|gb|EEW88194.1| recombination protein F [Brucella melitensis bv. 1 str. 16M]
 gi|260669400|gb|EEX56340.1| DNA replication and repair protein recF [Brucella abortus bv. 4
           str. 292]
 gi|260671240|gb|EEX58061.1| DNA replication and repair protein recF [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675967|gb|EEX62788.1| DNA replication and repair protein recF [Brucella abortus bv. 6
           str. 870]
 gi|260874412|gb|EEX81481.1| DNA replication and repair protein recF [Brucella abortus bv. 9
           str. C68]
 gi|262764929|gb|EEZ10850.1| DNA replication and repair protein recF [Brucella melitensis bv. 3
           str. Ether]
 gi|263003274|gb|EEZ15567.1| DNA replication and repair protein recF [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263095427|gb|EEZ19028.1| recombination protein F [Brucella melitensis bv. 2 str. 63/9]
 gi|297174580|gb|EFH33927.1| DNA replication and repair protein recF [Brucella abortus bv. 5
           str. B3196]
 gi|326408014|gb|ADZ65079.1| recombination protein F [Brucella melitensis M28]
 gi|326537732|gb|ADZ85947.1| DNA replication and repair protein RecF [Brucella melitensis M5-90]
          Length = 384

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 168/371 (45%), Positives = 235/371 (63%), Gaps = 4/371 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y 
Sbjct: 12  DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71

Query: 63  DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           DV R  +   F+  A ++ M  G A+I            R ++IN +     D+L  + R
Sbjct: 72  DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINRIAASA-DDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|49474938|ref|YP_032979.1| recombination protein F [Bartonella henselae str. Houston-1]
 gi|49237743|emb|CAF26935.1| DNA replication and repair protein recF [Bartonella henselae str.
           Houston-1]
          Length = 377

 Score =  308 bits (789), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 167/370 (45%), Positives = 230/370 (62%), Gaps = 6/370 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++ ++ L +  +RNY S  + F  QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y+
Sbjct: 6   HKVAVRQLKLLRYRNYFSFNIRFSGQHVVFTGHNGSGKTNLLEALSFLSPGRGLRRAAYS 65

Query: 63  DVTRI-GSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           DV+   G    F  FAR+E  + G  +I   LE  D+   R + IN V     D L  + 
Sbjct: 66  DVSFANGGGEGFVVFARLECALYGEVNIGTALEMSDNS--RKVHINGVN-ETGDCLTDYC 122

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +S L PSMD +F+G S+ERRRFLDRMV AIDP H RR+ D++R+MR RNRL  +G  D 
Sbjct: 123 HMSILTPSMDGLFTGSSLERRRFLDRMVLAIDPLHSRRIADYDRVMRARNRLFLDGNEDC 182

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239
           +W  ++E QMAEL   I+ AR+++I  L+ ++     +  FP   L + GFL+    + S
Sbjct: 183 AWFDALEKQMAELATAISAARIDVIRLLNDMLARTPSQLPFPRAFLQIDGFLEAALSKIS 242

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++E++  +L   R +D  + RTL GPHR+DL V Y DK +  A  STGEQK +L G+
Sbjct: 243 AVEVEEQFCDRLQHNRAIDRAAGRTLEGPHRTDLQVFYADKNMAAASCSTGEQKALLTGL 302

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L HARL    +   PILLLDEI AHLD  +R ALF I+ D+G Q FMTGTD  +F++L 
Sbjct: 303 VLCHARLTGLMSERTPILLLDEIVAHLDSHRRAALFDILDDLGGQTFMTGTDPILFNALK 362

Query: 360 ETAKFMRISN 369
             A+F  I +
Sbjct: 363 GRAEFFAIKD 372


>gi|254700821|ref|ZP_05162649.1| recombination protein F [Brucella suis bv. 5 str. 513]
 gi|261751327|ref|ZP_05995036.1| DNA replication and repair protein recF [Brucella suis bv. 5 str.
           513]
 gi|261741080|gb|EEY29006.1| DNA replication and repair protein recF [Brucella suis bv. 5 str.
           513]
          Length = 384

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 168/372 (45%), Positives = 234/372 (62%), Gaps = 4/372 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            DV R  +   F+  A ++ M  G A+I            R ++IN +     D+L  + 
Sbjct: 71  DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYA 128

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           RI W+VPSMD +F G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D 
Sbjct: 129 RILWVVPSMDGLFIGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDD 188

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
            W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++
Sbjct: 189 QWLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEA 248

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+
Sbjct: 249 ALDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGL 308

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L 
Sbjct: 309 ILAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALA 368

Query: 360 ETAKFMRISNHQ 371
             A+F  +S  Q
Sbjct: 369 GDAQFFNVSAGQ 380


>gi|118590458|ref|ZP_01547860.1| recombination protein F [Stappia aggregata IAM 12614]
 gi|118436921|gb|EAV43560.1| recombination protein F [Stappia aggregata IAM 12614]
          Length = 382

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 163/371 (43%), Positives = 234/371 (63%), Gaps = 9/371 (2%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L+++ FRNY++L L   A+   FVG NG GKTNILEAISFL+ GRG RRA+ AD+ 
Sbjct: 8   QLTRLSLTGFRNYSALTLPLTAKMAAFVGPNGAGKTNILEAISFLTAGRGLRRAALADIA 67

Query: 66  RIGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           R G    +S  A V  +G E      +   T    S R ++I+   +R  + L  ++R+ 
Sbjct: 68  RKGGDGSWSVAATVLLDGFETRIGTGLVAGT----SGRKVRIDGEEVRGSESLLDYMRVL 123

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WLVPSMD +F+G   +RRRFLDR+  AIDP H RR+ DFE  +R RNRLL +G  D+ + 
Sbjct: 124 WLVPSMDGLFTGPGSDRRRFLDRLTLAIDPTHGRRVSDFENALRQRNRLLDQGGSDA-YL 182

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           S++E Q+AELG  ++IAR E ++ LS +I  +  Q   FPH  +SL G  + +      +
Sbjct: 183 SALEQQVAELGTAVSIARTETVDLLSRMIAGQATQDLPFPHASVSLEGAFEAETAGLSAS 242

Query: 243 LKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +E+ Y + L DGR  D  + RTL GPH SDL V +  KA+  +  STGEQK +L+G+ L
Sbjct: 243 DREDRYRQMLQDGRHRDRAAGRTLNGPHLSDLTVFHAAKAMPASQSSTGEQKALLIGLIL 302

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHA L +  +G  P+LLLDE++AHLD D+R+ALF  +  +G Q+FMTGTD+++F++L   
Sbjct: 303 AHAELTAKVSGMTPVLLLDEVAAHLDPDRRSALFSKLDSLGGQVFMTGTDEALFEALPAE 362

Query: 362 AKFMRISNHQA 372
           A+   I  H+ 
Sbjct: 363 AEVFEIREHKG 373


>gi|254713411|ref|ZP_05175222.1| recombination protein F [Brucella ceti M644/93/1]
 gi|254716232|ref|ZP_05178043.1| recombination protein F [Brucella ceti M13/05/1]
 gi|261218005|ref|ZP_05932286.1| DNA replication and repair protein recF [Brucella ceti M13/05/1]
 gi|261321145|ref|ZP_05960342.1| DNA replication and repair protein recF [Brucella ceti M644/93/1]
 gi|260923094|gb|EEX89662.1| DNA replication and repair protein recF [Brucella ceti M13/05/1]
 gi|261293835|gb|EEX97331.1| DNA replication and repair protein recF [Brucella ceti M644/93/1]
          Length = 384

 Score =  306 bits (783), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 167/371 (45%), Positives = 234/371 (63%), Gaps = 4/371 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y 
Sbjct: 12  DRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYD 71

Query: 63  DVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           DV R  +   F+  A ++ M  G A+I            R ++IN +     D+L  + R
Sbjct: 72  DVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGG-EGGRKVRINGIAASA-DDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+V SMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVSSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|153007350|ref|YP_001368565.1| recombination protein F [Ochrobactrum anthropi ATCC 49188]
 gi|151559238|gb|ABS12736.1| DNA replication and repair protein RecF [Ochrobactrum anthropi ATCC
           49188]
          Length = 387

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 168/367 (45%), Positives = 235/367 (64%), Gaps = 4/367 (1%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y D
Sbjct: 13  RVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYDD 72

Query: 64  VTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           V R  S   F+  A ++ M  G A+I            R ++IN +     D L+ + RI
Sbjct: 73  VARANSLDGFAIHAALDCMIYGEAEIGTGTAGGG-EGGRKVRINGIAGSGDDMLD-YARI 130

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  W
Sbjct: 131 LWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQW 190

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSFC 241
             +IE+QMAELG  I  AR E +  ++++I     +  FP     L G L+ + + ++  
Sbjct: 191 LDAIESQMAELGTAIAAARAEAMRLIAAMIERLPVEGPFPKADCFLEGTLEQRINVEAAL 250

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ L
Sbjct: 251 DLEEDFRRTLRDGRARDRAAGRTLEGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLVL 310

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++F++L   
Sbjct: 311 AHARLTAELSGMAPILLLDEIAAHLDTGRRAALFGILDELGGQAFMTGTDRALFEALEGE 370

Query: 362 AKFMRIS 368
           A+F  +S
Sbjct: 371 AQFFNVS 377


>gi|163867417|ref|YP_001608614.1| recombination protein F [Bartonella tribocorum CIP 105476]
 gi|161017061|emb|CAK00619.1| DNA replication and repair protein [Bartonella tribocorum CIP
           105476]
          Length = 377

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 166/370 (44%), Positives = 228/370 (61%), Gaps = 6/370 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++ ++ L +  +RNY+   + F  QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y+
Sbjct: 6   HKVSVRQLKLLRYRNYSFFNIHFSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAYS 65

Query: 63  DVTRI-GSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           D++ I G    F  FA +E  + G   I   LE  D+   R + I D V    D L  + 
Sbjct: 66  DISFIDGGGEGFVVFACLECALYGEVKIGTALEVSDNS--RKVHI-DGVNEPSDCLTDYC 122

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            IS L PSMD +F+G S+ERRRFLDRMV AIDP H RR+ D+++ MR RNRL  +G  D+
Sbjct: 123 HISILTPSMDGLFTGPSLERRRFLDRMVLAIDPLHSRRIADYDKTMRARNRLFLDGNEDN 182

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQS 239
           +W +++E QMAEL   I+ AR+++I  L+ +  +   +  FP   L + GFL+    D S
Sbjct: 183 AWFNALEKQMAELATAISAARIDVIRLLNDMFTQMPSQIPFPRAFLQIDGFLETALGDIS 242

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++E++   L   R MD  + RTL GPHR+DL V Y DK       STGEQK +L G+
Sbjct: 243 ATEVEEQFCDLLRRNRAMDRAAGRTLEGPHRTDLQVFYADKNRAATSCSTGEQKALLTGL 302

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L HARL    +  APILLLDE++AHLD  +R ALF I+ D+  Q FMTGTD+ +FD L 
Sbjct: 303 VLCHARLTGMISQRAPILLLDEMAAHLDSHRRAALFDILDDLSVQTFMTGTDRLLFDDLK 362

Query: 360 ETAKFMRISN 369
             A+F  I +
Sbjct: 363 GRAEFFEIKD 372


>gi|240849791|ref|YP_002971179.1| DNA replication and repair protein RecF [Bartonella grahamii
           as4aup]
 gi|240266914|gb|ACS50502.1| DNA replication and repair protein RecF [Bartonella grahamii
           as4aup]
          Length = 377

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 166/370 (44%), Positives = 224/370 (60%), Gaps = 6/370 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++ ++ L +  +RNY    + F  QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y+
Sbjct: 6   HKVAVRQLKLLRYRNYPFFNIHFSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAYS 65

Query: 63  DVTRIGSPSFFSTF-ARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           DV+ +          AR+E  + G   I   LE  D+   R + IN V     D L  + 
Sbjct: 66  DVSFVDGGGGGFVVFARLECALYGEVKIGTALEVSDNS--RKVHINGVN-ESGDCLTDYC 122

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            IS L PSMD +F G S+ERR FLDRMV AIDP HRRR+ D++R MR RNRL  +G  D 
Sbjct: 123 HISVLTPSMDGLFIGPSLERRSFLDRMVLAIDPLHRRRIADYDRAMRARNRLFLDGNEDC 182

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239
           +W  ++E QMAEL   I+ ARV++I  L+ +  +   +  FP   L + GFL+    + S
Sbjct: 183 AWFDALEKQMAELATAISAARVDVIRLLNDMFTQMPSQIPFPRAFLQIDGFLETALSEIS 242

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++E++  +L   R MD  + RTL GPHR+DL V Y DK I     STGEQK +L G+
Sbjct: 243 AIEVEEKFCDRLRHNRAMDRAAGRTLEGPHRADLQVFYADKNIAATSCSTGEQKALLTGL 302

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L HARL    +  APILLLDE++AHLD  +R ALF I+ D+  Q FMTGTD+ +FD L 
Sbjct: 303 VLCHARLTGMMSEKAPILLLDEMAAHLDSHRRAALFDILDDLAVQTFMTGTDRLLFDDLK 362

Query: 360 ETAKFMRISN 369
             A+F  I +
Sbjct: 363 GRAEFFEIKD 372


>gi|319407988|emb|CBI81642.1| DNA replication and repair protein [Bartonella schoenbuchensis R1]
          Length = 390

 Score =  298 bits (764), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 167/370 (45%), Positives = 230/370 (62%), Gaps = 6/370 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++ ++ L ++ +RNY S  +    QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y+
Sbjct: 9   HKVTVRQLKLTHYRNYCSFNIHLSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAYS 68

Query: 63  DVT-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           D++   G  + F  FAR++  + G  +I   LET D  S R + IN V     D L  + 
Sbjct: 69  DISFSKGVGAAFVVFARLQCALYGEVNIGTTLETSD--SGRKVHINGVH-ESCDCLTDYC 125

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +S L PSMD +F G S++RRRFLDRMV AID  H RR+ D+++ MR RNRL  +G  + 
Sbjct: 126 HVSVLTPSMDGLFMGPSLDRRRFLDRMVLAIDSLHGRRIADYDKAMRARNRLFLDGNENC 185

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239
           +W  ++EAQMAEL   I  ARV++I  L+ +  +      FP   L + GFL+      S
Sbjct: 186 AWFDALEAQMAELATAIAAARVDVIQLLNDMSEQTSSYTPFPRAFLQIDGFLEKALGTTS 245

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++E++  +L   R +D  +RRTL GPHR+DL V Y DK I     STGEQK +L G+
Sbjct: 246 AIEVEEQFLDRLRRNRPIDCAARRTLEGPHRTDLQVFYADKNIAATSCSTGEQKALLTGL 305

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L HARL    +   PILLLDE++AHLD  +R ALF I+ D+GSQ FMTGTD+ +FDSL 
Sbjct: 306 VLCHARLTGMMSNMTPILLLDEMAAHLDSRRRAALFDILDDLGSQTFMTGTDRILFDSLK 365

Query: 360 ETAKFMRISN 369
             A+F  I +
Sbjct: 366 GRAEFFEIED 375


>gi|319898311|ref|YP_004158404.1| DNA replication and repair protein [Bartonella clarridgeiae 73]
 gi|319402275|emb|CBI75814.1| DNA replication and repair protein [Bartonella clarridgeiae 73]
          Length = 380

 Score =  296 bits (757), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 169/372 (45%), Positives = 230/372 (61%), Gaps = 10/372 (2%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++ ++ L ++ +RNY SL L    QH +  G NG GKTN+LEA+SFLSPGRG RRA+Y+
Sbjct: 9   HKVAVRQLKLANYRNYCSLVLHLLGQHVVLTGRNGAGKTNLLEALSFLSPGRGLRRAAYS 68

Query: 63  DVT---RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           DV+   R G+   F  FAR+E  + G  +I   LE  D  S R + IN +     D L  
Sbjct: 69  DVSFSERKGAG--FVVFARLECALYGEVNIGTALEVND--SSRKVHINGIN-EASDCLTD 123

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           +  IS L PSMDR+F+G S++RRRFLDRMV +ID  H RR+ D++R+MR RNRL  +   
Sbjct: 124 YCHISILTPSMDRLFTGPSLDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDRNN 183

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-D 237
           D +W  ++E QMAEL   I  AR+++I  L+ +  +      FP   L + GFL+    +
Sbjct: 184 DRAWLDALEVQMAELATAIAAARIDVIQLLNDMFAQTSSCIPFPRALLKVDGFLEKALRE 243

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   ++E++  +L   R +D  + RTL GPHR+DL V Y DK +     STGEQK +L 
Sbjct: 244 TSAIEVEEQFLHRLRKNRAIDCAAGRTLEGPHRTDLQVFYADKNMDATFCSTGEQKALLT 303

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           G+ L HARL S  +  APILLLDEI+AH D  +R ALF I+ D+G Q FMTGTD  +FDS
Sbjct: 304 GLVLCHARLTSTISNMAPILLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHVLFDS 363

Query: 358 LNETAKFMRISN 369
           L   A+F  I N
Sbjct: 364 LKGRAEFFEIEN 375


>gi|90420504|ref|ZP_01228411.1| DNA replication and repair protein recF [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335232|gb|EAS48985.1| DNA replication and repair protein recF [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 407

 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 163/367 (44%), Positives = 226/367 (61%), Gaps = 2/367 (0%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +++FRNY +L L F     +FVGDNG GKTN+LEAIS L+PGRG RRA Y DV
Sbjct: 21  VRLDELRLADFRNYETLSLRFTRGFVVFVGDNGAGKTNLLEAISLLTPGRGLRRAPYQDV 80

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKL-ETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G    FS  A    +     I+ K+       + R ++I++   +  DEL   LRI 
Sbjct: 81  ARKGGSGGFSVRANAASLGVETIIATKMMPDPAGAAARSVRIDETAAKSADELLDLLRIL 140

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P+MD +F+G + +RRRFLDRMV A+DP H RR  D+ER +R RNRLL +   D SW 
Sbjct: 141 WLTPAMDGLFTGPAGDRRRFLDRMVLAVDPTHGRRAADYERAVRSRNRLLADNRLDDSWL 200

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCA 242
           S IEAQMAELG+ + +AR E++  L+ +I        FP   L LT   DG    +    
Sbjct: 201 SGIEAQMAELGIAMALARSELVGMLAGMIARTGAGSPFPSAGLELTSGYDGLDLARPSAD 260

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++E   +L   R  D  + RTL G HR++L V +  KA+  A  STGEQK +L+G+ LA
Sbjct: 261 VEDEARMRLRSARYGDRAAGRTLEGAHRAELSVTHLAKAMPAALSSTGEQKALLIGLVLA 320

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HARL++  +   P+LLLDEI+AHLD  +R ALF ++ ++G Q FMTGTD S+F +L + A
Sbjct: 321 HARLVAAMSSLPPLLLLDEIAAHLDPGRRAALFDLIAELGVQAFMTGTDASLFAALGDRA 380

Query: 363 KFMRISN 369
           + M +S 
Sbjct: 381 QIMEVSG 387


>gi|254503692|ref|ZP_05115843.1| RecF/RecN/SMC N terminal domain, putative [Labrenzia alexandrii
           DFL-11]
 gi|222439763|gb|EEE46442.1| RecF/RecN/SMC N terminal domain, putative [Labrenzia alexandrii
           DFL-11]
          Length = 385

 Score =  293 bits (749), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 157/374 (41%), Positives = 228/374 (60%), Gaps = 9/374 (2%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L ++ FRNYA + +   A    FVG NG GKTNILEAISFL+ GRG RRA+  D+ 
Sbjct: 8   RLTRLTLTGFRNYAIMGIGLSAGMVAFVGANGAGKTNILEAISFLTAGRGLRRAALTDIA 67

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVDELNKHLRIS 123
           R+G    +S  A++     L DI   L T     V  R ++I+   +R  + L  ++R+ 
Sbjct: 68  RVGGDGTWSVSAKIH----LDDIETSLGTGATAGVPGRKVRIDGEDMRSSESLLDYMRVL 123

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WLVPSMD +F+G   +RRRFLDR+  AIDP H RR+ DFE  +R RN+LL +G  D+ + 
Sbjct: 124 WLVPSMDGLFTGPGSDRRRFLDRLTLAIDPAHGRRVSDFENALRQRNKLLDQGGSDA-YL 182

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           S++E Q+A LG  ++ AR E +  L  +I    ++   FP   LSL G  + +      +
Sbjct: 183 SALELQVASLGTAVSFARQETVGLLKQMIDGRPIENTTFPQAMLSLEGTFEAETIGMSAS 242

Query: 243 LKEEYAKKLFD-GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +E++ ++L + GR  D  + RTL GPH SDL V +  K +  A  STGEQK +L+G+ L
Sbjct: 243 DQEDHYRRLLEQGRHRDRAAGRTLTGPHLSDLKVRHAAKDMPAAQSSTGEQKALLIGLVL 302

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHA L +  +G  P+LLLDE++AHLD D+R ALF  +  +G Q+FMTGTD S+FD+L   
Sbjct: 303 AHAELTAKVSGMTPVLLLDEVAAHLDPDRRAALFERLDALGGQVFMTGTDASLFDALPVH 362

Query: 362 AKFMRISNHQALCI 375
           ++   + N++A  I
Sbjct: 363 SEVFEVGNNEARLI 376


>gi|304392439|ref|ZP_07374380.1| DNA replication and repair protein RecF [Ahrensia sp. R2A130]
 gi|303295543|gb|EFL89902.1| DNA replication and repair protein RecF [Ahrensia sp. R2A130]
          Length = 391

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 166/377 (44%), Positives = 228/377 (60%), Gaps = 19/377 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRNY +LRL+ D +H +  G+NG GKTN+LEAISFLSPGRG RR SY  V
Sbjct: 11  VAITTLKLDHFRNYDTLRLLCDHRHVVLTGENGSGKTNLLEAISFLSPGRGLRRTSYDQV 70

Query: 65  TRI-GSPS----FFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDEL 116
            +  GS S     ++  A +E   G   I   L+ R    V   R + IN    R  ++L
Sbjct: 71  AKADGSDSPRSGTWAVHAELETPAGELTIGTGLQ-RGPNGVDGQRRISINGAPKRTSEDL 129

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
            + LR+ WLVP+MD +F+G + +RRRFLDRMV AIDP H RR+ D+ER MR RN+LL E 
Sbjct: 130 LERLRVVWLVPAMDGLFTGAASDRRRFLDRMVLAIDPGHGRRVNDYERAMRSRNKLLDEN 189

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLD 233
             D SW   IEAQ+AE G  I  AR E++  LS    ++   EN   FP  +L L G L+
Sbjct: 190 RIDDSWLGGIEAQLAEQGTAIAFARSELVGLLS----DHAAPENASPFPTARLLLEGALE 245

Query: 234 ---GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
               + + S   +++ +  +L   R  D  + RTL GPHRS+L V +  K +  A  STG
Sbjct: 246 EEIARGEGSAADVEDSFRDRLSANRYRDRAAGRTLEGPHRSNLAVIHAPKNMAAALCSTG 305

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           EQK +L G+ LAHA+L++  TG  P+LLLDE +AHLD  +R ALF ++  IG Q +MTGT
Sbjct: 306 EQKALLTGLVLAHAKLVAKLTGIPPVLLLDECAAHLDAQRRAALFDLIDTIGCQAWMTGT 365

Query: 351 DKSVFDSLNETAKFMRI 367
           D  +F++L + A++  +
Sbjct: 366 DAPLFEALGDRAQYFTV 382


>gi|319406519|emb|CBI80161.1| DNA replication and repair protein [Bartonella sp. 1-1C]
          Length = 370

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 166/368 (45%), Positives = 226/368 (61%), Gaps = 6/368 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RNY SL L     H +  G NGVGKTN+LEA+SFLSPGRG RRA+Y+D+
Sbjct: 1   MAVRQLKLENYRNYCSLALHLLGHHVVLTGRNGVGKTNLLEALSFLSPGRGLRRAAYSDI 60

Query: 65  T-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           +   G  + F  FAR++  + G A+I   LE  D    R + IN V    +D L  +  I
Sbjct: 61  SCSEGGGTGFVVFARLQCTLYGEANIGTALEVND--GGRKVHINGVN-EAIDCLMDYCHI 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           S L PSMD +F+G +++RRRFLDRMV +ID  H RR+ D++R+MR RNRL  +G  D  W
Sbjct: 118 SILTPSMDGLFTGPALDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDGNDDRVW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
             ++E QMAEL   I  ARV++I  L+ +  +      FP   L + G L+    + S  
Sbjct: 178 LDALEVQMAELATAIAAARVDVIQLLNDMFAQVSSCIPFPRAFLQVDGCLEKALREMSAI 237

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            ++E++  +L + R +D ++ RTL GPHR+DL V Y DK I     STGEQK +L G+ L
Sbjct: 238 EVEEQFLSRLRNNRAIDCVAGRTLEGPHRTDLKVFYADKNINATLCSTGEQKALLTGLVL 297

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
            HARL S  +   PILLLDEI+AH D  +R ALF I+ D+G Q FMTGTD  +FDSL   
Sbjct: 298 CHARLTSMISNMTPILLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHILFDSLKGR 357

Query: 362 AKFMRISN 369
           A+F  I N
Sbjct: 358 AEFFEIEN 365


>gi|319403603|emb|CBI77188.1| DNA replication and repair protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 370

 Score =  288 bits (738), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 166/368 (45%), Positives = 224/368 (60%), Gaps = 6/368 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RNY SL L     H +F G NG GKTN+LEA+SFLSPGRG RRA+Y+D+
Sbjct: 1   MAVRQLKLENYRNYCSLVLHLLGHHVVFTGRNGAGKTNLLEALSFLSPGRGLRRAAYSDI 60

Query: 65  TRI-GSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           +   GS + F  FAR++  + G A+I   LE  D    R + IN V     D L  +  I
Sbjct: 61  SYSEGSGTGFVVFARLQCALYGEANIGTALEVND--GGRKVHINGVN-EASDCLMDYCHI 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           S L PSMD +F G +++RRRFLDRMV +ID  H RR+ D++R+MR RNRL  +G  D  W
Sbjct: 118 SILTPSMDGLFIGPALDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDGNNDRVW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
             ++E QMAEL   I  ARV++I  L+    +      FP   L + GFL+    + S  
Sbjct: 178 LDALEVQMAELATAIAAARVDVIQLLNDTFAQVSSCVPFPRAFLQVDGFLEKALREMSAI 237

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            ++E++  +L + R +D ++ RTL GPHR+DL V Y DK +     STGEQK +L G+ L
Sbjct: 238 EVEEQFLNRLRNNRAIDCVAGRTLEGPHRTDLQVFYADKNMNATLCSTGEQKALLAGLVL 297

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
            HARL S  +   PI LLDEI+AH D  +R ALF I+ D+G Q FMTGTD  +FDSL   
Sbjct: 298 CHARLTSMISNMTPIFLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHILFDSLKGR 357

Query: 362 AKFMRISN 369
           A+F  I N
Sbjct: 358 AEFFEIEN 365


>gi|319405030|emb|CBI78640.1| DNA replication and repair protein [Bartonella sp. AR 15-3]
          Length = 370

 Score =  288 bits (737), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 166/368 (45%), Positives = 225/368 (61%), Gaps = 6/368 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RNY SL L    QH +  G NGVGKTN+LEA+SFLSPGRG RRA Y+D+
Sbjct: 1   MAVRQLKLENYRNYCSLALHLLGQHVVLTGRNGVGKTNLLEALSFLSPGRGLRRAPYSDI 60

Query: 65  T-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           +   GS + F  FAR++  + G A+I   LE  D    R + IN V     D L  +  I
Sbjct: 61  SCSEGSGTGFVVFARLQCALYGEANIGTALEAND--GGRKVHINGVN-EASDCLMDYCHI 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           S L PSMD +F+G +++RRRFLDRMV +ID  H RR+ D++R+MR RNRL  +   D +W
Sbjct: 118 SILTPSMDGLFTGPALDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDRNDDRAW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFC 241
             ++E QMAEL   I  ARV++I  L+ +  +      FP   L + GFL+    + S  
Sbjct: 178 LDALELQMAELATAIAAARVDIIQLLNDMFAQVSAWIPFPRAFLQVDGFLEKALSETSAI 237

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            ++E++  +L + R +D  + R L GPHR+DL V Y DK +     STGEQK +L G+ L
Sbjct: 238 EVEEQFLYRLRNNRAIDCAAGRALEGPHRTDLQVFYADKNMDATFCSTGEQKALLTGLVL 297

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
            HARL S  +   PILLLDEI+AH D  +R ALF I+ D+G Q FMTGTD  +FDSL   
Sbjct: 298 CHARLTSTISKMTPILLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHILFDSLKGR 357

Query: 362 AKFMRISN 369
           A+F  I N
Sbjct: 358 AEFFEIEN 365


>gi|49473790|ref|YP_031832.1| recombination protein F [Bartonella quintana str. Toulouse]
 gi|49239293|emb|CAF25619.1| DNA replication and repair protein recF [Bartonella quintana str.
           Toulouse]
          Length = 377

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 166/370 (44%), Positives = 233/370 (62%), Gaps = 6/370 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++ ++ L +  +RNY+S  + F  QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y+
Sbjct: 6   HKVTVRQLRLVRYRNYSSFNIHFSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAYS 65

Query: 63  DVTRIGSP-SFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           DV+   S  + F  FAR++  + G  DI    +  DD S R + IN V  +  D L  + 
Sbjct: 66  DVSFADSGNTGFVVFARLQCALYGEVDIGTAWDI-DDNS-RKVHINGVN-KTGDCLTDYC 122

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +S L PSMD +F+G S+ERRRFLDRMV AIDP H RR++D++R MR RNRL ++G  D 
Sbjct: 123 HMSVLTPSMDGLFTGSSLERRRFLDRMVLAIDPFHGRRIMDYDRAMRARNRLFSDGSEDR 182

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239
           +W  ++E QMAEL   I  AR+++I  L+ +  +      FP   L + GFL+    + S
Sbjct: 183 AWFDALEKQMAELATAIAAARIDIIRLLNGMFAQAPVHTPFPRAFLQVDGFLETALSKAS 242

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++E++  +L   R +D  + RTL GPHR+DL + Y DK +  A  STGEQK ++ G+
Sbjct: 243 AIEVEEQFCDRLQHNRAIDRAAGRTLEGPHRTDLQIFYADKNMAAASCSTGEQKALVTGL 302

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L HARL    +  APILLLDEI AHLD  +R ALF ++ D+G Q FMTGTD  +FD+L 
Sbjct: 303 VLCHARLTGIMSERAPILLLDEIVAHLDSHRRAALFDLLDDLGGQTFMTGTDPILFDALK 362

Query: 360 ETAKFMRISN 369
             A+F  I +
Sbjct: 363 GRAEFFEIKD 372


>gi|328541627|ref|YP_004301736.1| DNA replication and repair protein recF [polymorphum gilvum
           SL003B-26A1]
 gi|326411379|gb|ADZ68442.1| DNA replication and repair protein recF [Polymorphum gilvum
           SL003B-26A1]
          Length = 377

 Score =  286 bits (732), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 158/380 (41%), Positives = 225/380 (59%), Gaps = 15/380 (3%)

Query: 1   MTNRIKIKF--LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           M++R+ +    L +++FRNY+ L L   A     VGDNG GKTNILEAIS L+ GRG RR
Sbjct: 1   MSSRVSVAIERLTLTDFRNYSLLVLEPSAPLVALVGDNGAGKTNILEAISLLTAGRGLRR 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           A+ AD+ R+  P  ++  A +    G  +  I        + R ++I+    R  + L  
Sbjct: 61  AALADIARLDGPGGWAISALLRTQAG--ETVIGTGYTPGEAGRRVRIDGTEARSSEALLD 118

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           HLR+ WLVPSMD +F+G   ERRRFLDR+  ++DP H RR+ D+ER +R RNRLL EG  
Sbjct: 119 HLRVLWLVPSMDGLFTGPGSERRRFLDRLTLSLDPTHGRRVNDYERALRQRNRLLEEGG- 177

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFD 237
            +++  SIE Q+AELG  + +AR E ++ L   I  +      FP   L++    DG+F+
Sbjct: 178 SAAYLDSIERQVAELGAAVALARGETVSLLQGCIDAQAATGLPFPRALLAV----DGEFE 233

Query: 238 ---QSFCALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
              Q   A   E    + L DGR  D  + RTL GPHRSDL+V +  K I  A  STGEQ
Sbjct: 234 VETQGLGASDREDRLRRMLRDGRTRDRAAGRTLCGPHRSDLVVQHAAKGIPAAQSSTGEQ 293

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           K +LVG+ LAHA L +   G  P+LLLDEI+AHLD  +R ALF  +  +  Q+ MTGTD 
Sbjct: 294 KALLVGLILAHADLTAAVAGMTPVLLLDEIAAHLDPGRRAALFSRLEALACQVVMTGTDA 353

Query: 353 SVFDSLNETAKFMRISNHQA 372
            +F+++   ++ + ++ ++A
Sbjct: 354 GLFEAMPAGSEILAVAGNRA 373


>gi|307942710|ref|ZP_07658055.1| DNA replication and repair protein RecF [Roseibium sp. TrichSKD4]
 gi|307773506|gb|EFO32722.1| DNA replication and repair protein RecF [Roseibium sp. TrichSKD4]
          Length = 379

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/370 (41%), Positives = 238/370 (64%), Gaps = 6/370 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L+++ FRNYASL L   AQ   FVG NG GKTNILEA+S+L+ GRG RRA+ AD+T
Sbjct: 8   RLNRLSLTNFRNYASLDLDLAAQLVAFVGANGTGKTNILEAVSYLTAGRGLRRANLADIT 67

Query: 66  -RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      +S  ++V+  +GL D+SI    + + + R ++I+ V  R  D L  ++RI W
Sbjct: 68  CKQVQEGGWSVASKVD-QDGL-DVSIGTGLKQNEAGRRVRIDGVDQRTSDSLLDYVRILW 125

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+P+MD +F+G   +RRRFLDR+  +++P H R++  FE+ +R RNRLL +G   +S+ +
Sbjct: 126 LIPAMDGLFTGPGSDRRRFLDRLTLSLNPAHGRQVSSFEKALRQRNRLLEQGG-SASYLT 184

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++E Q+AELG  + ++R E ++ L   + E  +    FP   L LTG  + + +    + 
Sbjct: 185 AVEQQVAELGTSVALSRRETVSLLQGTLSEQAELGLPFPIAGLELTGDFEAETEGLSASD 244

Query: 244 KEEYAKKLF-DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +E++ +KL  DGR  D  + RTL GPH SDL V +  K +  +  STGEQK +L+G+ LA
Sbjct: 245 QEDHFRKLLEDGRPRDRAAGRTLTGPHLSDLHVRHTAKDMPASQSSTGEQKALLIGLILA 304

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA L ++ +G  PILLLDE++AHLD ++R ALF  +  +G Q+FMTGTD+S+F+SL   +
Sbjct: 305 HADLSASVSGLTPILLLDEVAAHLDPNRREALFARLDALGCQVFMTGTDESLFESLPIPS 364

Query: 363 KFMRISNHQA 372
           +   I + +A
Sbjct: 365 QIFAIEDGKA 374


>gi|121602459|ref|YP_989526.1| recombination protein F [Bartonella bacilliformis KC583]
 gi|120614636|gb|ABM45237.1| DNA replication and repair protein recF [Bartonella bacilliformis
           KC583]
          Length = 378

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 162/370 (43%), Positives = 225/370 (60%), Gaps = 6/370 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ +  L ++ +RNY  L + F ++H +F G NG GKTN+LEA+SFL+PGRG RRA+Y+
Sbjct: 2   HRVAVTQLKLAHYRNYHFLNVNFSSRHVVFTGHNGAGKTNLLEALSFLAPGRGLRRAAYS 61

Query: 63  DVT-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           DV+   G    F  FAR++  + G   I   LE     S R L IN       D L  + 
Sbjct: 62  DVSCSRGEGEGFVVFARLQCALYGEVSIGTALEAGG--SNRRLHINGEN-EACDCLTDYC 118

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            IS L PSMD +F G +++RRRFLDRMV AID  H RR+ D+++ MR RNRL  +G  D 
Sbjct: 119 HISALTPSMDGLFMGPTLDRRRFLDRMVLAIDSLHGRRIADYDKAMRARNRLFADGNDDR 178

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239
           +W +++E QMAEL   I  AR++++  L+   ++      FP   L + G L+    + S
Sbjct: 179 AWFNALEMQMAELATAIAAARIDVVQLLNDTFVQMSASIPFPRAFLQIDGSLEEALRKMS 238

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++EE+  +L   R MD  + RTL GPHR+DL V Y DK +  A  STGEQK +L+G+
Sbjct: 239 AVDVEEEFLDRLRRNRAMDRAAGRTLEGPHRTDLQVFYADKNMAAASCSTGEQKALLIGL 298

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L HA L    +  API LLDE++AHLD  +R ALF I+ D+G Q FMTGTD+ +FDSL 
Sbjct: 299 VLCHAHLTGVMSNMAPIFLLDEMAAHLDFYRRAALFDILDDLGGQTFMTGTDRILFDSLK 358

Query: 360 ETAKFMRISN 369
             A+F  I +
Sbjct: 359 GRAEFFEIED 368


>gi|254472181|ref|ZP_05085581.1| DNA replication and repair protein [Pseudovibrio sp. JE062]
 gi|211958464|gb|EEA93664.1| DNA replication and repair protein [Pseudovibrio sp. JE062]
          Length = 376

 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 151/369 (40%), Positives = 225/369 (60%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +++FRNY++  +  +++   FVGDNG GKTNILEAISFLS GRG RRA+  D+
Sbjct: 7   VALSRLALTDFRNYSAASVELNSRMIAFVGDNGAGKTNILEAISFLSAGRGLRRATLGDI 66

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      ++  A ++G  G   I   L   +    R ++I+    R  + L ++LR+ W
Sbjct: 67  ARADGAGGWAVSAVLDGEYGETRIGTGLTAGEPG--RRVRIDGEEARSSEALLEYLRVLW 124

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVPSMD +F+G + +RR+FLDR+V +++P H R +  FE+ +R RNRLL+EG     +  
Sbjct: 125 LVPSMDGLFTGSASDRRKFLDRLVLSLNPSHGRMVASFEKALRQRNRLLSEGG-TPEFLD 183

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTG-FLDGKFDQSF 240
           +IEAQ+AELG  + +AR E ++ L+  +    QK+    FP  ++ L G F       S 
Sbjct: 184 AIEAQVAELGTAVALARSETVSLLAKTL--ETQKQLGLPFPSAEIHLQGAFETATIGMSA 241

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              ++ Y + L +GR  D  + RTL GPHRSDL V + +K +  A  STGEQK +L+G+ 
Sbjct: 242 SDREDCYRELLVEGRFRDRAAGRTLDGPHRSDLYVVHSEKQMPAAQASTGEQKALLIGLV 301

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHA L S+ +G  PILLLDE++AHLD  +R ALF  +  +G Q+FMTGTD+++F  L  
Sbjct: 302 LAHADLTSSISGMTPILLLDEVAAHLDPGRREALFTRLEVLGGQVFMTGTDQNLFKDLPS 361

Query: 361 TAKFMRISN 369
            A+   +  
Sbjct: 362 AAQIFEVEG 370


>gi|115522033|ref|YP_778944.1| recombination protein F [Rhodopseudomonas palustris BisA53]
 gi|115515980|gb|ABJ03964.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           BisA53]
          Length = 379

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 211/369 (57%), Gaps = 6/369 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNYA+  L  +A   +  G NG GKTN LEAIS LSPGRG RRA+  D+ 
Sbjct: 5   RIHRLTLTHFRNYAAASLRVNADLVVLAGPNGAGKTNCLEAISLLSPGRGLRRATLDDIA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV----RCLQINDVVIRVVDELNKHLR 121
                  ++  A +EG  GLA +   ++ R D +     RC +I+   +        HLR
Sbjct: 65  DNQGDGSWAVSAEIEGALGLATLGTGIDPRGDEAASTTRRC-RIDRENVGSAAAFGDHLR 123

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           + WL P+MD +F G + ERRRF DR+V AID +H  R+   +R +R RNRLL +   D+ 
Sbjct: 124 MVWLTPAMDALFMGAASERRRFFDRLVLAIDSQHSARVSALDRSLRSRNRLLEQRSGDTH 183

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSF 240
           W  ++E + AEL V +   R E    L++ +        FP  +++L G+++G    +  
Sbjct: 184 WLDAVERETAELAVAVAAMRGETATRLAAALSARGAASPFPSAEIALDGWMEGALRSEPA 243

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            A+++ Y   L DGR  D+ + RTL GPH +DL V Y  KA+     STGEQK +L+G+ 
Sbjct: 244 TAVEDRYRAILRDGRPRDAAAGRTLDGPHLTDLRVIYAPKAMPARDASTGEQKALLIGLI 303

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHA L++  TG  P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D + F  L  
Sbjct: 304 LAHAHLVAEMTGITPLLLLDEVVAHLDPSRRRALFEELAKLGAQVWMTGADPAAFVDLGA 363

Query: 361 TAKFMRISN 369
           + +   + N
Sbjct: 364 SGEMFEVDN 372


>gi|86747131|ref|YP_483627.1| recombination protein F [Rhodopseudomonas palustris HaA2]
 gi|86570159|gb|ABD04716.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           HaA2]
          Length = 378

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 210/367 (57%), Gaps = 3/367 (0%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNY +  L   A+  + VG NG GKTN LEAISFLSPGRG RRA+  DV 
Sbjct: 5   RITRLTLTHFRNYRAAVLTTSAERVVLVGANGAGKTNCLEAISFLSPGRGLRRATLDDVA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++  A VEG  GLA +   ++    D  + R  +I+   +        HLR+ 
Sbjct: 65  DNEGDGSWAVAAEVEGALGLATLGTGIDPPRADAATSRRCRIDREPVGSATAFGDHLRMV 124

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P+MD +F G + ERRRF DR+V AID +H  R+   +R +R RNRLL   Y D+ W 
Sbjct: 125 WLTPAMDGLFMGAASERRRFFDRLVLAIDSQHSGRVSALDRSLRSRNRLLEVRYPDAHWL 184

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242
            +IE + AEL V +   R +    L++++        FP  K+ L G+++     +   A
Sbjct: 185 DAIERETAELAVAVAAMRGQTAMRLAAMLDARGAASAFPSAKIMLDGWMESALLTEPATA 244

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++ Y   L +GR  D+ + RTL GPH +DL V Y  KA+     STGEQK +L+G+ LA
Sbjct: 245 VEDRYRTILREGRPRDAAAGRTLDGPHLTDLEVVYAPKAMPARDASTGEQKALLIGLVLA 304

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA+L+S  TG  P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D + F  +   A
Sbjct: 305 HAQLVSEMTGITPLLLLDEVVAHLDPSRRAALFEELAKLGAQVWMTGADPAAFAEIGSGA 364

Query: 363 KFMRISN 369
           +   + +
Sbjct: 365 EIFTVES 371


>gi|148251630|ref|YP_001236215.1| recombination protein F [Bradyrhizobium sp. BTAi1]
 gi|146403803|gb|ABQ32309.1| DNA replication and repair protein RecF [Bradyrhizobium sp. BTAi1]
          Length = 378

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 144/359 (40%), Positives = 209/359 (58%), Gaps = 5/359 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FR+Y +  +   A     VG NG GKTN LEAISF +PGRG RRA+  DV 
Sbjct: 5   RINRLALTHFRSYRAASVSVQADMVALVGANGAGKTNCLEAISFFAPGRGLRRATLEDVA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSV--RCLQINDVVIRVVDELNKHLRI 122
                  ++  A +EG  GLA     +E  R+D ++  RC +I+   +        H+R+
Sbjct: 65  DNQGDGSWAISAEIEGALGLATFGTGIEPPRNDAAIVRRC-RIDREPVGSAAAFGDHIRM 123

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P+MD +F G + ERRRF DR+V AID  H  R+   ER +R RNRLL    FD  W
Sbjct: 124 VWLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNFDDHW 183

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
           C +IE + AEL V +  +R +    L++++ +  Q   FP  +++L G+++     +   
Sbjct: 184 CDAIERETAELAVAVAASRGQTAVKLAAMLRQRGQASAFPSAEIALAGWMENALLTEPAL 243

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+++ Y   L D R  D+ + RTL GPH +DL V Y  K++     STGEQK +L+G+ L
Sbjct: 244 AVEDRYRALLRDNRARDAAAGRTLDGPHLTDLHVIYAPKSMPARDASTGEQKALLIGLIL 303

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           AHA L++ TTG  P+LLLDEI AHLD  +R ALF  +  +G+Q+++TG D + F  L E
Sbjct: 304 AHATLVAETTGIVPMLLLDEIVAHLDPGRRTALFAELGTLGAQVWLTGADPAAFAELRE 362


>gi|27375938|ref|NP_767467.1| recombination protein F [Bradyrhizobium japonicum USDA 110]
 gi|27349076|dbj|BAC46092.1| DNA replication and repair protein [Bradyrhizobium japonicum USDA
           110]
          Length = 378

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 142/354 (40%), Positives = 207/354 (58%), Gaps = 5/354 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNY +  L   A     VG NG GKTN +EAISFLSPGRG RRA+  DV 
Sbjct: 5   RIHRLTLTHFRNYRAAGLETAADMVALVGPNGAGKTNCIEAISFLSPGRGLRRATLEDVA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSV--RCLQINDVVIRVVDELNKHLRI 122
                  ++  A+VEG  GLA +   +E  R D +V  RC +I+   +        H+R+
Sbjct: 65  DNQGDGSWAVSAQVEGALGLATLGTGIEPPRADAAVSRRC-RIDREPVNSAAAFGDHIRM 123

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P+MD +F G + ERRRF DR+V AID  H  R+   ER +R RNRLL    +D  W
Sbjct: 124 VWLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRINALERSLRSRNRLLETRNYDDHW 183

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
           C +IE + AEL V +   R +    L+ ++    Q   FP  +++L G+++     ++  
Sbjct: 184 CDAIERETAELAVAVAATRGQTAARLTGMLSARAQASAFPSAQIALDGWMENALLRETAT 243

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           ++++ Y + L D R  D+++ RT  GPH +DL V Y  K +     STGEQK +L+G+ L
Sbjct: 244 SVEDRYRQILRDNRPRDAIAGRTTDGPHLTDLQVIYAPKGMPARDASTGEQKALLIGLVL 303

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           AHA L++  TG  P+LLLDE+ AHLD ++R ALF  +  +G+Q+++TG D + F
Sbjct: 304 AHATLVAEMTGIVPLLLLDEVVAHLDPNRRAALFEELKKLGAQVWLTGADPAAF 357


>gi|90421531|ref|YP_529901.1| recombination protein F [Rhodopseudomonas palustris BisB18]
 gi|90103545|gb|ABD85582.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           BisB18]
          Length = 379

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 207/368 (56%), Gaps = 5/368 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI  L ++ FRNY +  +       + VG NG GKTN LEAIS LSPGRG RRA+  D+ 
Sbjct: 5   KIHRLTLTHFRNYRAASVTVRGDVVVLVGPNGAGKTNCLEAISLLSPGRGLRRATLDDIA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNKHLRI 122
                  ++  A VEG  GLA +   ++ R + +    RC +I+   +        HLR+
Sbjct: 65  DNHGDGSWAVSAEVEGALGLATLGTGIDPRTEAAATTRRC-RIDRENVGSAAAFGDHLRM 123

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P+MD +F G + ERRRF DR+V AID +H  R+   +R +R RNRLL +   DS W
Sbjct: 124 VWLTPAMDGLFLGAASERRRFFDRLVLAIDSQHSSRVSALDRSLRSRNRLLEQRSHDSHW 183

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
             +IE + AEL V +   R E +  L++ + +      FP   ++L G+++     +   
Sbjct: 184 LDAIERETAELAVAVAAMRGETVTRLAAALAQRSADSAFPSATIALDGWMENALRSEPAT 243

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+++ Y   L D R  D+ + RTL GPH +DL V Y  K +     STGEQK +L+G+ L
Sbjct: 244 AVEDRYRTSLRDNRARDAAAGRTLDGPHLTDLRVIYTPKNMPARDASTGEQKALLIGLVL 303

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHA L++  TG  P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D + F  L E 
Sbjct: 304 AHAYLVAEMTGITPLLLLDEVVAHLDPSRRKALFGELARLGAQVWMTGADPAAFVDLGEG 363

Query: 362 AKFMRISN 369
            +   + N
Sbjct: 364 GELFEVDN 371


>gi|299133397|ref|ZP_07026592.1| DNA replication and repair protein RecF [Afipia sp. 1NLS2]
 gi|298593534|gb|EFI53734.1| DNA replication and repair protein RecF [Afipia sp. 1NLS2]
          Length = 383

 Score =  271 bits (694), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 137/354 (38%), Positives = 205/354 (57%), Gaps = 4/354 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L++++FR+Y +  +       + VG NG GKTN LEAIS L+PGRG RRA + D+ 
Sbjct: 9   RILRLSLTQFRSYRAASVTTRGDLVVLVGPNGAGKTNCLEAISLLAPGRGLRRARFEDIA 68

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRI 122
                  ++  A VEG  GLA +   ++     D  + R ++I+   +       +HLR+
Sbjct: 69  NRAGDGSWAVSAEVEGAGGLATLGTGIDAPTGEDGSAKRRIRIDREAVSSASAFGEHLRM 128

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL PSMD +F+G + ERRR  DR+V AID  H  R+   ER +R RNRLL +  FD+ W
Sbjct: 129 VWLTPSMDGLFTGPASERRRLFDRLVLAIDKDHSSRVSALERSLRSRNRLLEDRNFDAHW 188

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
           C +IE + AEL V +   R   +  LS+++        FP  +++L G+++     +   
Sbjct: 189 CEAIERETAELAVAVAAQRGHTLQRLSAMLAARGATSAFPSARITLDGWMENALMSEPAT 248

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+++ Y   L   R +D+ + RTL GPH +DL V Y  K +     STGEQK +L+G+ L
Sbjct: 249 AVEDHYRDILRKSRLLDAAAGRTLNGPHLTDLHVIYAPKEMPAKEASTGEQKALLIGLIL 308

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           AHA L++  TG  P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D + F
Sbjct: 309 AHASLVAEMTGIVPLLLLDEVVAHLDPRRRAALFDELATLGAQVWMTGADPAAF 362


>gi|91974485|ref|YP_567144.1| recombination protein F [Rhodopseudomonas palustris BisB5]
 gi|91680941|gb|ABE37243.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           BisB5]
          Length = 378

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 209/367 (56%), Gaps = 3/367 (0%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNY +  L    +  + VG NG GKTN LEAISFLSPGRG RRA+  DV+
Sbjct: 5   RITRLTLTHFRNYRAAALHTRGERVVLVGANGAGKTNCLEAISFLSPGRGLRRATLDDVS 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++  A VEG  GLA +   ++    D  + R  +I+   +        HLR+ 
Sbjct: 65  DHQGDGSWAVSAEVEGALGLATLGTGIDPPRADAATTRRCRIDREPVGSATAFGDHLRMV 124

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P+MD +F G + ERRRF DR+V AID +H  R+   +R +R RNRLL E   D  W 
Sbjct: 125 WLTPAMDGLFMGAASERRRFFDRLVLAIDSQHSSRVSALDRSLRSRNRLLEERNADRHWL 184

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242
            +IE + AEL V +   R +    L++++        FP  K+ L G+++     +   A
Sbjct: 185 DAIERETAELAVAVAAMRGQTAARLAAMLDARGAASAFPSAKIMLDGWMESALLTEPATA 244

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++ Y   L DGR  D+ + RTL GPH +DL V Y  KA+     STGEQK +L+G+ LA
Sbjct: 245 VEDRYRAILRDGRLRDAAAGRTLDGPHLTDLQVIYAPKAMPARDASTGEQKALLIGLVLA 304

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA+L+S  TG  P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D + F  +   A
Sbjct: 305 HAQLVSEITGITPLLLLDEVVAHLDPARRRALFAELERLGAQVWMTGADPAGFAEIGPDA 364

Query: 363 KFMRISN 369
           +   + +
Sbjct: 365 EIFTVES 371


>gi|154250461|ref|YP_001411285.1| DNA replication and repair protein RecF [Parvibaculum
           lavamentivorans DS-1]
 gi|154154411|gb|ABS61628.1| DNA replication and repair protein RecF [Parvibaculum
           lavamentivorans DS-1]
          Length = 412

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 220/370 (59%), Gaps = 4/370 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           + R ++  L +++FR+YA   L  D +  +  G+NG GKTN+LEA+S LSPGRG R A+Y
Sbjct: 30  SPRARLSRLVVTDFRSYARAELALDGRPVVLTGENGAGKTNLLEAVSLLSPGRGLRGAAY 89

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHL 120
           A++ R      ++  A +E   G   +   +E     S R   +  D        L  HL
Sbjct: 90  AEIARDNGEGGWAVAATLEAEHGPVRLGTGIEPGMAPSSRSRSVRIDGEPAGPSALAAHL 149

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           RI WL P+MDR+F   + ERRRFLDR+V   DP H  R   +ER +R R++LL +  FD 
Sbjct: 150 RIVWLTPAMDRLFVEGASERRRFLDRLVMGFDPAHGTRAAAYERALRERSKLLADDVFDD 209

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W S +E+QMAE GV +  AR+E++  L    ++   +  FP   ++L G L+    ++ 
Sbjct: 210 AWLSGLESQMAEHGVALAAARLEIVARLRG-ALDVAPEGPFPRAHVALEGSLETALAEAA 268

Query: 241 CA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +++ +  +L + R  D+ + R L GPHRSDL+V +  K       STGEQK +L+GI
Sbjct: 269 AVDVEDGFRARLAEMRGRDAAAGRALDGPHRSDLLVRHTAKDREARQCSTGEQKALLIGI 328

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA+ARL++   G AP+LLLDE++AHLD  +R ALF  +  +G Q FMTGTD S+F++L 
Sbjct: 329 VLANARLLA-AMGRAPLLLLDEVAAHLDAGRRAALFDEIVSLGLQAFMTGTDPSLFETLG 387

Query: 360 ETAKFMRISN 369
           E A+ +R+++
Sbjct: 388 ERAQDLRVAH 397


>gi|39933083|ref|NP_945359.1| recombination protein F [Rhodopseudomonas palustris CGA009]
 gi|39652708|emb|CAE25447.1| putative RecF protein [Rhodopseudomonas palustris CGA009]
          Length = 388

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 146/370 (39%), Positives = 204/370 (55%), Gaps = 4/370 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNY    L   A   + VG NG GKTN LEAISFLSPGRG RRA+  DV 
Sbjct: 14  RITRLTLTHFRNYRGASLTTTADQVVLVGPNGAGKTNCLEAISFLSPGRGLRRATLEDVA 73

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++    +EG  GLA +   +E    D  + R  +I+   +        HLR+ 
Sbjct: 74  NHEGDGSWAVSTEIEGALGLATLGTGIEPPRGDTTTTRRCRIDREPVGSAAAFGDHLRMV 133

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182
           WL PSMD +F G + ERRRF DR+V AID  H  R+   +R +R RNRLL +    DS W
Sbjct: 134 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDVRNADSHW 193

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
             +IE + AEL + +   R +    L++++        FP  KL L G+++     +   
Sbjct: 194 LDAIERETAELAIAVAAQRGQTALKLAAMLDARGATSAFPSAKLMLDGWMENALTSEPAT 253

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+++ Y   L D R  D+ + RTL GPH +DL V Y  KA+     STGEQK +L+G+ L
Sbjct: 254 AVEDRYRAILRDSRGRDAAAGRTLDGPHLTDLEVIYAPKAMPARDASTGEQKALLIGLVL 313

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHA+L++ TT   P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D   F  +   
Sbjct: 314 AHAQLVAETTSITPLLLLDEVVAHLDPGRREALFTELGKLGAQVWMTGADPMAFAEIGPA 373

Query: 362 AKFMRISNHQ 371
           A    + N Q
Sbjct: 374 AGIFDVENGQ 383


>gi|146337178|ref|YP_001202226.1| recombination protein F [Bradyrhizobium sp. ORS278]
 gi|146189984|emb|CAL73976.1| DNA replication and repair protein recF [Bradyrhizobium sp. ORS278]
          Length = 378

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 145/359 (40%), Positives = 206/359 (57%), Gaps = 5/359 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L+++ FR+Y +  +   A     VG NG GKTN LEAISF +PGRG RRA+  DV 
Sbjct: 5   RINRLSLTHFRSYRAAGVSVQADMVALVGANGAGKTNCLEAISFFAPGRGLRRATLEDVA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSV--RCLQINDVVIRVVDELNKHLRI 122
                  ++  A +EG  GLA     +E  R D S   RC +I+   +        H+R+
Sbjct: 65  DNQGDGSWAISAEIEGALGLATFGTGIEPPRGDASTTRRC-RIDREPVGSAAAFGDHIRM 123

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL PSMD +F G + ERRRF DR+V AID  H  R+   ER +R RNRLL    FD  W
Sbjct: 124 VWLTPSMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNFDDHW 183

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
           C +IE + AEL V +  +R +    L++++ +      FP  +++L G+++     +   
Sbjct: 184 CDAIERETAELAVAVAASRGQTAVKLAAMLRQRGAASAFPSAEIALDGWMENALLTEPAL 243

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+++ Y   L D R  D+ + RTL GPH +DL V Y  K +     STGEQK +L+G+ L
Sbjct: 244 AVEDRYRALLRDNRARDAAAGRTLDGPHLTDLHVIYAPKNMPARDASTGEQKALLIGLIL 303

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           AHA L++ TTG  P+LLLDEI AHLD  +R ALF  +  +G+Q+++TG D + F  L E
Sbjct: 304 AHATLVAETTGIVPMLLLDEIVAHLDPGRRTALFAELGTLGAQVWLTGADPAAFAELRE 362


>gi|192288436|ref|YP_001989041.1| recombination protein F [Rhodopseudomonas palustris TIE-1]
 gi|192282185|gb|ACE98565.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           TIE-1]
          Length = 379

 Score =  268 bits (686), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 146/368 (39%), Positives = 204/368 (55%), Gaps = 4/368 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNY    L   A   + VG NG GKTN LEAISFLSPGRG RRA+  DV 
Sbjct: 5   RITRLTLTHFRNYRGASLTTTADQVVLVGPNGAGKTNCLEAISFLSPGRGLRRATLEDVA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++  A VEG  GLA +   +E    D  + R  +I+   +        HLR+ 
Sbjct: 65  NHEGDGSWAVSAEVEGALGLATLGTGIEPPRGDTPTTRRCRIDREPVGSAAAFGDHLRMV 124

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182
           WL PSMD +F G + ERRRF DR+V AID  H  R+   +R +R RNRLL +    DS W
Sbjct: 125 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDIRNADSHW 184

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
             +IE + AEL + +   R +    L++++        FP  KL L G+++     +   
Sbjct: 185 LDAIERETAELAIAVAAQRGQTALKLAAMLDARGATSAFPSAKLMLDGWMENALTSEPAT 244

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+++ Y   L D R  D+ + RTL GPH +DL V Y  KA+     STGEQK +L+G+ L
Sbjct: 245 AVEDRYRAILRDSRGRDAAAGRTLDGPHLTDLEVIYAPKAMPARDASTGEQKALLIGLVL 304

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHA+L++ TT   P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D   F  +   
Sbjct: 305 AHAQLVAETTSITPLLLLDEVVAHLDPGRREALFTELGKLGAQVWMTGADPMAFAEIGPA 364

Query: 362 AKFMRISN 369
           A    + +
Sbjct: 365 AGIFDVES 372


>gi|158422636|ref|YP_001523928.1| recombination protein F [Azorhizobium caulinodans ORS 571]
 gi|158329525|dbj|BAF87010.1| DNA replication and repair protein [Azorhizobium caulinodans ORS
           571]
          Length = 378

 Score =  268 bits (685), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 138/364 (37%), Positives = 215/364 (59%), Gaps = 4/364 (1%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R +++ L +S FR+Y++ ++       +  G NG GKTNILEA+S LSPGRG RRA+   
Sbjct: 5   RARVRRLTLSRFRSYSAAQIEVADGPVVLTGPNGAGKTNILEAVSLLSPGRGLRRAALDA 64

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRI 122
             + G    ++  A VEG  G  D+    + +R D S R  +I+   +   +    HL++
Sbjct: 65  FAQAGGDGSWAVAAHVEGALGPVDLGTGSDASRPDGSTRRCRIDRESVSSANAFLDHLKV 124

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P MD +F+G   +RRRFLDR+V A+D  H  R+   ER +R RNR+L +G  D+  
Sbjct: 125 VWLTPEMDGLFTGPPADRRRFLDRLVLAVDASHGTRVNALERALRSRNRVLEDGG-DNRM 183

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLDGKF-DQSF 240
            S++E ++AELGV +  AR+E +  L+  I  +  +   FPH  ++L G L+    D   
Sbjct: 184 LSAVEHELAELGVAVAAARLETVQRLAGEIAAHADETSPFPHADIALDGALERMLTDAPA 243

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +++ Y   L D R  D  + RTL GPH  DL+V +  K +  A  STGEQK +L+G+ 
Sbjct: 244 VEVEDRYRALLQDNRPRDRAAGRTLEGPHLCDLVVAHGPKGLPAARCSTGEQKSLLIGLA 303

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+HARL++   G AP++LLD++ A+LD ++R+ +F  +  +G+Q++MTG D S F +L+ 
Sbjct: 304 LSHARLVTAMQGLAPVVLLDDVVAYLDAERRSGMFAALKALGAQVWMTGADPSAFAALDG 363

Query: 361 TAKF 364
             +F
Sbjct: 364 AERF 367


>gi|288959568|ref|YP_003449909.1| DNA replication and repair protein [Azospirillum sp. B510]
 gi|288911876|dbj|BAI73365.1| DNA replication and repair protein [Azospirillum sp. B510]
          Length = 394

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 216/371 (58%), Gaps = 10/371 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + ++ FR Y S+RL  D +    +G NG GKTN+LEA+SFL+PGRG R A  A+V R
Sbjct: 20  VRRMTLTRFRGYDSVRLEPDHRPVALIGPNGAGKTNLLEAVSFLAPGRGLRGARLAEVER 79

Query: 67  IGSP--SFFSTFARVEGMEGLADISIKLETRD-----DRSVRCLQINDVVIRVVDELNKH 119
           +GSP  + ++  A ++   G  +I    E  D     DR  R ++I+    +    L +H
Sbjct: 80  LGSPPGAGWAVAATLDTPLGPVEIGTGREPHDGNRASDRDRRLVRIDGHPAKGQTALAEH 139

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           + + WL P MDR+F   +  RRRFLDR+VF  DP H  R+  +E  +R R RLL +G FD
Sbjct: 140 VAMVWLTPQMDRLFLEGASGRRRFLDRLVFGFDPAHAGRLSRYEHALRERARLLRDGRFD 199

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
             W  ++E QMA  G+ +  AR E++  L +     +    FP   L++ G ++   D+ 
Sbjct: 200 EGWLGALEDQMATTGIAVAAARREVVQRLRAACARSIGP--FPAADLAVAGTVERWLDEG 257

Query: 240 FCALKEEYAK-KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                E+  +  L  GR+ D+      +GPH+SDL V +  K +  A  STGEQK +L+ 
Sbjct: 258 PALAAEDSLRDSLRLGRRADADGGGATLGPHKSDLAVRHAPKDMPAALCSTGEQKALLIA 317

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           I LA+ARL++   G APILLLDE++AHLD ++R ALF  +  +G+Q +MTGTD+ +F+ L
Sbjct: 318 IVLANARLLAAERGAAPILLLDEVAAHLDPERRAALFGEILALGAQAWMTGTDEGIFNPL 377

Query: 359 NETAKFMRISN 369
            E A+  RI +
Sbjct: 378 GEDARRFRIED 388


>gi|75674202|ref|YP_316623.1| recombination protein F [Nitrobacter winogradskyi Nb-255]
 gi|74419072|gb|ABA03271.1| DNA replication and repair protein RecF [Nitrobacter winogradskyi
           Nb-255]
          Length = 385

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 211/367 (57%), Gaps = 6/367 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ L+++ FRNY +      +   + VG NG GKTN LEAIS LSPGRG RRA+  D+ 
Sbjct: 9   RVRRLSLTHFRNYRAATFETRSNMIVLVGPNGAGKTNCLEAISLLSPGRGLRRATRDDIA 68

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV----RCLQINDVVIRVVDELNKHLR 121
                  ++  A ++G  GLA +   ++   + +     RC +I+   +        HLR
Sbjct: 69  DNTGDGSWAVSAEMQGALGLATLGTGIDAPGNEAAPSGRRC-RIDREPVASAAAFGDHLR 127

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           + WL PSMD +F+G + +RRRFLDR+V AID  H  R+   ER +R RNRLL   + D  
Sbjct: 128 MVWLTPSMDGLFTGPASDRRRFLDRLVLAIDSEHSGRVSALERSLRSRNRLLEMRHHDDL 187

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSF 240
           WC +IE + AEL V +   R + +  L++ +       +FP   + L G+++     +  
Sbjct: 188 WCEAIERKTAELAVAVAAMRAQTVTRLTAALEARGGGSSFPAASIHLDGWMENALLTEPA 247

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +++ Y + L   R  D+ + RTL GPH +DL V Y  K +     STGEQK +L+G+ 
Sbjct: 248 TVVEDRYREILRASRPRDAAAGRTLEGPHLTDLEVIYAPKNMPAKEASTGEQKALLIGLV 307

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL++  TG  P+LLLDE+ AHLD D+R ALF  +  +G+Q++M+G D + F +L+ 
Sbjct: 308 LAHARLVAEMTGIIPLLLLDEVVAHLDPDRRGALFGELAGLGAQVWMSGADPAAFANLSA 367

Query: 361 TAKFMRI 367
            ++  R+
Sbjct: 368 GSETFRV 374


>gi|316931399|ref|YP_004106381.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           DX-1]
 gi|315599113|gb|ADU41648.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           DX-1]
          Length = 394

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 203/368 (55%), Gaps = 4/368 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNY S  L   A   + VG NG GKTN LEA+S LSPGRG RRA   D+ 
Sbjct: 20  RITRLTLTHFRNYRSASLTTTADQVVLVGPNGAGKTNCLEAVSLLSPGRGLRRARLEDIA 79

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++  A VEG  GLA +   +E    D  + R  +I+   +        HLR+ 
Sbjct: 80  GHEGDGSWAVSAEVEGALGLATLGTGIEPPRGDVATTRRCRIDREPVGSAAAFGDHLRMV 139

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182
           WL PSMD +F G + ERRRF DR+V AID  H  R+   +R +R RNRLL +    DS W
Sbjct: 140 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDIRNADSHW 199

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
             +IE + AEL + +   R +    L+++I        FP  ++ L G+++     +   
Sbjct: 200 LDAIERETAELAIAVAAQRGQTATKLAAMIDARGATSAFPSARIMLDGWMESALASEPAT 259

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +++ Y   L D R  D+ + RTL GPH +DL V Y  KA+     STGEQK +L+G+ L
Sbjct: 260 VVEDRYRAVLRDNRSRDAAAGRTLDGPHLTDLEVIYAPKAMPAREASTGEQKALLIGLVL 319

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHA+L++ TT   P+LLLDE+ AHLD  +R ALF  ++ +G+Q++MTG D   F  +   
Sbjct: 320 AHAQLVAETTSITPLLLLDEVVAHLDPGRRAALFGELSRLGAQVWMTGADPLAFAEIGPA 379

Query: 362 AKFMRISN 369
           A    + N
Sbjct: 380 AAIFDVDN 387


>gi|163797312|ref|ZP_02191265.1| recombination protein F [alpha proteobacterium BAL199]
 gi|159177403|gb|EDP61959.1| recombination protein F [alpha proteobacterium BAL199]
          Length = 410

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 144/377 (38%), Positives = 220/377 (58%), Gaps = 13/377 (3%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           + +R+ ++ L ++ FRNYA+  L  D    +  G NG GKTN+LEA+SFL+PGRG RRA 
Sbjct: 21  VPHRLAVRRLTLTRFRNYAAESLDIDGPAVVLTGPNGAGKTNLLEAVSFLTPGRGLRRAR 80

Query: 61  YADVTRI-------GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            ++V R+        S + ++  ARV+G  G  +I    +   D   R ++++    R  
Sbjct: 81  LSEVDRLVPADTIDTSSTAWAVAARVDGKLGAVNIGTGRDPDSDGERRLVRVDGAPARSQ 140

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
             L  H+ +SWL P+MDR+F   +  RRRFLDRMVFA DP H  R+  +E   R RNRL+
Sbjct: 141 STLGDHVTVSWLTPAMDRLFLDGASGRRRFLDRMVFAFDPEHSTRVNHYEHAWRERNRLI 200

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            +G  D +W +++E  +A  G+ +  AR  ++  L+ +  E   +  FP  +L+L G +D
Sbjct: 201 KDGVRDPAWFAALEETLAATGIAVAAARSSLVARLNQVCAET--EPPFPAAELTLDGTVD 258

Query: 234 GKFDQSFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
              D++    +++     L  GR+  S       GPHRSDL+V +  K +     STGEQ
Sbjct: 259 RWLDEAPALEIEDRLRATLAAGRRPGSPEAE---GPHRSDLLVRHVPKNMPAERCSTGEQ 315

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           K +LVGI LAHARL +   G +PILLLDE++AHLD+ +R ALF  V  +G Q ++TGTD+
Sbjct: 316 KALLVGIVLAHARLQAIEEGASPILLLDEVAAHLDDRRRTALFEAVLALGGQAWLTGTDR 375

Query: 353 SVFDSLNETAKFMRISN 369
            VF  + + A+ + +++
Sbjct: 376 GVFAPIADRAQIVEVTD 392


>gi|209883687|ref|YP_002287544.1| DNA replication and repair protein RecF [Oligotropha
           carboxidovorans OM5]
 gi|209871883|gb|ACI91679.1| DNA replication and repair protein RecF [Oligotropha
           carboxidovorans OM5]
          Length = 382

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 138/357 (38%), Positives = 204/357 (57%), Gaps = 7/357 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L+++EFR+Y +  +   +   + VG NG GKTN LEAIS L+PGRG RRA + D+ 
Sbjct: 5   RILRLSLTEFRSYHAASVRPQSDLVVLVGPNGAGKTNCLEAISLLAPGRGLRRARFEDIA 64

Query: 66  -RIG--SPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKH 119
            R G      ++  A VEG  GLA +   ++        + R  +I+   +       +H
Sbjct: 65  NRAGDDGDGSWAVSAEVEGALGLATLGTGIDAPSAEGGNAKRRARIDREAVSSASAFGEH 124

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           LR+ WL P+MD +F+G + ERRRF DR+V AID  H  R+   ER +R RNRLL +  FD
Sbjct: 125 LRMVWLTPAMDGLFTGPASERRRFFDRLVLAIDKDHSSRVSALERSLRSRNRLLEDRNFD 184

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQ 238
             WC +IE + AEL V +   R   +  L+ ++        FP  +++L G+++     +
Sbjct: 185 PHWCEAIERETAELAVAVAAQRGHTLRRLAGMLAARGATSVFPSARITLDGWMENALMSE 244

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
              A+++ Y   L   R +D+ + RTL GPH +DL V Y  K +     STGEQK +L+G
Sbjct: 245 PATAVEDRYRDILRKSRLLDAAAGRTLNGPHLTDLHVIYAPKNMPAKEASTGEQKALLIG 304

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           + LAHA L++  TG  P+LLLDE+ AHLD  +R ALF  +  +G Q++MTG D + F
Sbjct: 305 LILAHASLVAEMTGIVPLLLLDEVVAHLDPRRRAALFDELATLGGQVWMTGADPAAF 361


>gi|170748658|ref|YP_001754918.1| DNA replication and repair protein RecF [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655180|gb|ACB24235.1| DNA replication and repair protein RecF [Methylobacterium
           radiotolerans JCM 2831]
          Length = 384

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 145/370 (39%), Positives = 205/370 (55%), Gaps = 8/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L   +FRN+A L L   A+    VG+NG GKTN+LEA+S   PGRG RRA +A +
Sbjct: 16  LRVTRLIARDFRNHADLELTPRARFVALVGENGAGKTNLLEALSLFVPGRGLRRAEFAAM 75

Query: 65  TRIGSPSFFS---TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            R G P  F+   T  R EG E      ++    D R+ R  +I+          ++ LR
Sbjct: 76  ARSGGPGGFAVSLTLDR-EGAEHRLGTGLEPPGPDGRASRLCRIDGATAASPVAFSEFLR 134

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           + WL P +D +F G + +RRRFLDR+V A+D  H  R+   ER +R RNRLL E   D  
Sbjct: 135 VVWLTPDLDGLFRGAAGDRRRFLDRLVLAVDAAHGARVSAMERALRSRNRLLEERPDDDR 194

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSF 240
           W  ++E ++AELGV + +AR E    L  LI E     + FP   + L G LD      +
Sbjct: 195 WLDAVEREVAELGVAVALARRETAERLDRLIAETRDDAQPFPWAAIRLEGDLD-DLVAVW 253

Query: 241 CALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            A++ E  Y   L +GR  D  + RTLIGP  SDL+V +  K +     STGEQK +L+G
Sbjct: 254 PAIEAEDRYRMALRNGRNRDRAAGRTLIGPQSSDLVVRHGPKDVPAGTASTGEQKALLIG 313

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LAHARL+   +G AP++LLDE++AHLD  +R  LF  +  +  Q++MTG D   F   
Sbjct: 314 LVLAHARLVRAMSGIAPLILLDEVAAHLDPRRRAGLFEALEALPGQVWMTGADPGAFAQA 373

Query: 359 NETAKFMRIS 368
               + +RI 
Sbjct: 374 GTRTEVLRIG 383


>gi|332559821|ref|ZP_08414143.1| recombination protein F [Rhodobacter sphaeroides WS8N]
 gi|332277533|gb|EGJ22848.1| recombination protein F [Rhodobacter sphaeroides WS8N]
          Length = 363

 Score =  260 bits (664), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 208/369 (56%), Gaps = 17/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++ + R+ FD +   FVG NG GKTN+LEAIS LSPGRG RRA+  ++
Sbjct: 4   LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNLLEAISLLSPGRGLRRAAADEI 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A V G+  + +I    E    R VR         +V+  L + LRI W
Sbjct: 64  ARRPEALGWKVAAAVTGLHSVHEIETWAEGGGARQVRI--DGKAATQVM--LGRLLRIVW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR+++  +  RRRFLDR+  +  P H   ++D+E+ MR RNRLL E   D+ W  
Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E +MAE    I   R E +  L  +  +   +  FP   LS+        D       
Sbjct: 180 ALEGRMAEAARAIRAHREEAVARL--MAAQGAAETAFPRAVLSVAS------DD-----P 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+ A    +GR+ D  + RTL+GPHR+DL   Y  K +  A  STGEQK +L+ + LA+A
Sbjct: 227 EDLAAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G AP+LLLDE++AHLDE +R ALF  +  +G+Q FMTGT   +F +L + A+ 
Sbjct: 287 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQR 346

Query: 365 MRISNHQAL 373
           + ++  Q L
Sbjct: 347 IEVTEAQGL 355


>gi|240136786|ref|YP_002961253.1| putative RecF protein [Methylobacterium extorquens AM1]
 gi|240006750|gb|ACS37976.1| putative RecF protein [Methylobacterium extorquens AM1]
          Length = 385

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 145/363 (39%), Positives = 201/363 (55%), Gaps = 6/363 (1%)

Query: 14  EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73
           +FRN+  L L    +    VG+NG GKTNILEA+S   PGRG RRA  A + R+G P  F
Sbjct: 17  DFRNHVDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRADLATMARVGGPGGF 76

Query: 74  STFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
           +  A +E  E         E    D R  R  +I+          ++ LRI WL P  D 
Sbjct: 77  AVSATLEASEAEHRFGSGYEPPGYDGRGTRVCRIDGANAPSPVAFSEFLRIVWLTPDFDG 136

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
           +F G + +RRRFLDR+V A+D  H  R+   ER +R RNRLL E   D  W  ++E ++A
Sbjct: 137 LFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPDDGRWLDAVEREVA 196

Query: 192 ELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEE--YA 248
           ELGV + +AR E +  L  LI E       FP   L L G LD      + AL+ E  + 
Sbjct: 197 ELGVAVALARRETVERLDRLIAETRDDAAPFPWASLRLEGDLD-DLVAVWPALEAEDRFR 255

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           + L  GR  D  + RTLIGP  +DL+V +  K +  A  STGEQK +L+G+ LAHARL+ 
Sbjct: 256 RALMQGRHRDRAAGRTLIGPQTTDLVVRHGPKDVPAATASTGEQKALLIGLVLAHARLVR 315

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
             +G AP++LLDE++AHLD  +R  LF  +  +  Q++MTG D ++F  L   A  + I+
Sbjct: 316 AMSGLAPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFAELEGRADMVNIA 375

Query: 369 NHQ 371
           + +
Sbjct: 376 DGR 378


>gi|218528086|ref|YP_002418902.1| DNA replication and repair protein RecF [Methylobacterium
           chloromethanicum CM4]
 gi|218520389|gb|ACK80974.1| DNA replication and repair protein RecF [Methylobacterium
           chloromethanicum CM4]
          Length = 385

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 145/363 (39%), Positives = 201/363 (55%), Gaps = 6/363 (1%)

Query: 14  EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73
           +FRN+  L L    +    VG+NG GKTNILEA+S   PGRG RRA  A + R+G P  F
Sbjct: 17  DFRNHVDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRADLATMARVGGPGGF 76

Query: 74  STFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
           +  A +E  E         E    D R  R  +I+          ++ LRI WL P  D 
Sbjct: 77  AVSATLEASEAEHRFGSGYEPPGYDGRGTRVCRIDGANAPSPVAFSEFLRIVWLTPDFDG 136

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
           +F G + +RRRFLDR+V A+D  H  R+   ER +R RNRLL E   D  W  ++E ++A
Sbjct: 137 LFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPDDGRWLDAVEREVA 196

Query: 192 ELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEE--YA 248
           ELGV + +AR E +  L  LI E       FP   L L G LD      + AL+ E  + 
Sbjct: 197 ELGVAVALARRETVERLDRLIAETRDDAAPFPWASLRLEGDLD-DLVAVWPALEAEDRFR 255

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           + L  GR  D  + RTLIGP  +DL+V +  K +  A  STGEQK +L+G+ LAHARL+ 
Sbjct: 256 RALMQGRHRDRAAGRTLIGPQTTDLVVRHGPKDVPAATASTGEQKALLIGLVLAHARLVR 315

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
             +G AP++LLDE++AHLD  +R  LF  +  +  Q++MTG D ++F  L   A  + I+
Sbjct: 316 AMSGLAPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFAELEGRADMVNIA 375

Query: 369 NHQ 371
           + +
Sbjct: 376 DGR 378


>gi|163849460|ref|YP_001637503.1| DNA replication and repair protein RecF [Methylobacterium
           extorquens PA1]
 gi|254558656|ref|YP_003065751.1| RecF protein [Methylobacterium extorquens DM4]
 gi|163661065|gb|ABY28432.1| DNA replication and repair protein RecF [Methylobacterium
           extorquens PA1]
 gi|254265934|emb|CAX21683.1| putative RecF protein [Methylobacterium extorquens DM4]
          Length = 384

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 144/363 (39%), Positives = 201/363 (55%), Gaps = 6/363 (1%)

Query: 14  EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73
           +FRN+  L L    +    VG+NG GKTNILEA+S   PGRG RRA  A + R+G P  F
Sbjct: 17  DFRNHVDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRADLATMARVGGPGGF 76

Query: 74  STFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
           +  A +E  E         E    D R  R  +I+          ++ LRI WL P  D 
Sbjct: 77  AVSATLEASEAEHRFGSGYEPPGYDGRGTRVCRIDGANAPSPVAFSEFLRIVWLTPDFDG 136

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
           +F G + +RRRFLDR+V A+D  H  R+   ER +R RNRLL E   D  W  ++E ++A
Sbjct: 137 LFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPDDGRWLDAVEREVA 196

Query: 192 ELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEE--YA 248
           ELGV + +AR E +  L  LI E       FP   L L G LD      + AL+ E  + 
Sbjct: 197 ELGVAVALARRETVERLDRLIAETRDDAAPFPWASLRLEGDLD-DLVAVWPALEAEDRFR 255

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           + L  GR  D  + RTLIGP  +DL+V +  K +  A  STGEQK +L+G+ LAHARL+ 
Sbjct: 256 RALMQGRHRDRAAGRTLIGPQTTDLVVRHGPKDVPAATASTGEQKALLIGLVLAHARLVR 315

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
             +G AP++LLDE++AHLD  +R  LF  +  +  Q++MTG D ++F  L   A  + ++
Sbjct: 316 AMSGLAPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFAELEGRADLIGVA 375

Query: 369 NHQ 371
           + +
Sbjct: 376 DGR 378


>gi|85713966|ref|ZP_01044955.1| recombination protein F [Nitrobacter sp. Nb-311A]
 gi|85699092|gb|EAQ36960.1| recombination protein F [Nitrobacter sp. Nb-311A]
          Length = 381

 Score =  258 bits (660), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 140/355 (39%), Positives = 206/355 (58%), Gaps = 6/355 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L++S+FRNY+S  L   +   +  G NG GKTN LEAIS LSPGRG RRA+  D+ 
Sbjct: 5   RILRLSLSQFRNYSSAALKTRSNMVVLAGPNGAGKTNCLEAISLLSPGRGLRRATRDDIA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV----RCLQINDVVIRVVDELNKHLR 121
                  ++  A V+G  GLA +   ++  ++ +     RC +I+   +        HLR
Sbjct: 65  DNRGDGSWAVSAEVQGPLGLATLGTGIDAPNNETAPGGRRC-RIDREPVASAAAFGDHLR 123

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           + WL PSMD +F+G + +RRRFLDR+V AID  H  R+   ER +R RNRLL     D  
Sbjct: 124 MVWLTPSMDGLFTGPASDRRRFLDRLVLAIDSDHSGRVSALERSLRSRNRLLEMRNHDDL 183

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSF 240
           WC ++E + AEL V +   R + I  LS  +       +FP  ++ L G+++ K   +  
Sbjct: 184 WCDAVERETAELAVAVAAMRAQTITRLSVALEARGSTSSFPSARIGLDGWMENKLLTEPA 243

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            A+++ Y + L   R  D+ + RTL GPH +D  V Y  K +     STGEQK +L+G+ 
Sbjct: 244 TAVEDRYREILRASRARDAAAGRTLEGPHLTDFEVIYAPKDMPAKEASTGEQKALLIGLV 303

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           LAHARL++  TG  P+LLLDE+ AHLD  +R+ALF  +  +G+Q++M+G D + F
Sbjct: 304 LAHARLVAEMTGIIPLLLLDEVVAHLDPHRRDALFSELAGLGAQVWMSGADPAAF 358


>gi|221640843|ref|YP_002527105.1| recombination protein F [Rhodobacter sphaeroides KD131]
 gi|221161624|gb|ACM02604.1| DNA replication and repair protein recF [Rhodobacter sphaeroides
           KD131]
          Length = 363

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 206/369 (55%), Gaps = 17/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++ + R+ FD +   FVG NG GKTN+LEAIS LSPGRG RRA+  ++
Sbjct: 4   LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNLLEAISLLSPGRGLRRAAADEI 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A V G+    +I    E    R VR         +V+  L + LRI W
Sbjct: 64  ARRPEALGWKVAAAVTGLHSGHEIETWAEGGGARQVRV--DGKAATQVM--LGRLLRIVW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR+++  +  RRRFLDR+  +  P H   ++D+E+ MR RNRLL E   D+ W  
Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E +MAE    I   R E +  L  +  +   +  FP   LS+        D       
Sbjct: 180 ALEGRMAEAARAIRAHREEAVARL--MAAQGAAETAFPRAMLSVAS------DD-----P 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+      +GR+ D  + RTL+GPHR+DL   Y  K +  A  STGEQK +L+ + LA+A
Sbjct: 227 EDLGAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G AP+LLLDE++AHLDE +R ALF  +  +G+Q FMTGT   +F +L + A+ 
Sbjct: 287 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQR 346

Query: 365 MRISNHQAL 373
           + ++  Q L
Sbjct: 347 IEVTEAQGL 355


>gi|188579290|ref|YP_001922735.1| DNA replication and repair protein RecF [Methylobacterium populi
           BJ001]
 gi|179342788|gb|ACB78200.1| DNA replication and repair protein RecF [Methylobacterium populi
           BJ001]
          Length = 385

 Score =  257 bits (657), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 144/374 (38%), Positives = 204/374 (54%), Gaps = 6/374 (1%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +    ++  L   +FRN+  L L    +    VG+NG GKTNILEA+S   PGRG RRA 
Sbjct: 4   LPGGTRLTRLIARDFRNHIDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRAD 63

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNK 118
            A + R+G P  F+  A +E  E    +    E    D R  R  +I+          ++
Sbjct: 64  LATMARVGGPGGFAVSATLETAEAEHRLGSGYEPPGYDGRGTRVCRIDGAPAPSPVAFSE 123

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            LRI WL P  D +F G + +RRRFLDR+V A+D  H  R+   ER +R RNRLL E   
Sbjct: 124 FLRIVWLTPDFDGLFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPD 183

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFD 237
           D  W  ++E ++AELGV + +AR E +  L  LI E       FP   + L G LD    
Sbjct: 184 DGRWLDAVEREVAELGVAVALARRETVERLDRLIAETRDDAAPFPWASIRLEGDLD-DLV 242

Query: 238 QSFCALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
             + AL+ E  + + L  GR  D  + RTLIGP  +DL+V +  K +  A  STGEQK +
Sbjct: 243 AVWPALEAEDRFRRALMQGRHRDRAAGRTLIGPQTTDLLVRHGPKDVPAATASTGEQKAL 302

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           L+G+ LAHARL+   +G  P++LLDE++AHLD  +R  LF  +  +  Q++MTG D ++F
Sbjct: 303 LIGLVLAHARLVRAMSGLTPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALF 362

Query: 356 DSLNETAKFMRISN 369
             L   A  + I++
Sbjct: 363 TELQGRADMVNIAD 376


>gi|126460791|ref|YP_001041905.1| recombination protein F [Rhodobacter sphaeroides ATCC 17029]
 gi|126102455|gb|ABN75133.1| DNA replication and repair protein RecF [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 363

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/369 (38%), Positives = 206/369 (55%), Gaps = 17/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++ + R+ FD +   FVG NG GKTN+LEAIS LSPGRG RRA+  ++
Sbjct: 4   LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNLLEAISLLSPGRGLRRAAADEI 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A V G+    +I    E    R VR         +V+  L + LRI W
Sbjct: 64  ARRPEALGWKVAAAVTGLHSGHEIETWAEGGGARQVRI--DGKAATQVM--LGRLLRIVW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR+++  +  RRRFLDR+  +  P H   ++D+E+ MR RNRLL E   D+ W  
Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E +MAE    I   R E +  L  +  +   +  FP   LS+        D       
Sbjct: 180 ALEGRMAEAARAIRAHREEAVARL--MAAQGAAETAFPRAVLSVAS------DD-----P 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+ A    +GR+ D  + RTL+GPHR+DL   Y  K +  A  STGEQK +L+ + LA+A
Sbjct: 227 EDLAAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G AP+LLLDE++AHLDE +R ALF  +  +G+Q FMTGT   +F +L   A+ 
Sbjct: 287 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGYRAQR 346

Query: 365 MRISNHQAL 373
           + ++  Q L
Sbjct: 347 IEVTEAQGL 355


>gi|77464922|ref|YP_354426.1| recombination protein F [Rhodobacter sphaeroides 2.4.1]
 gi|77389340|gb|ABA80525.1| RecF protein [Rhodobacter sphaeroides 2.4.1]
          Length = 368

 Score =  256 bits (655), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 206/370 (55%), Gaps = 17/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++ + R+ FD +   FVG NG GKTN+LEAIS LSPGRG RRA+  ++
Sbjct: 9   LAVTSLALSHFRSHRAARMGFDGRPVAFVGSNGAGKTNLLEAISLLSPGRGLRRAAADEI 68

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A V G+    +I    E    R VR         +V+  L + LRI W
Sbjct: 69  ARRPEALGWKVAAAVTGLHSGHEIETWAEGGGARQVRV--DGKAATQVM--LGRLLRIVW 124

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR+++  +  RRRFLDR+  +  P H   ++D+E+ MR RNRLL E   D+ W  
Sbjct: 125 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 184

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E +MAE    I   R E +  L  +  +   +  FP   LS+        D       
Sbjct: 185 ALEGRMAEAARAIRAHRDEAVARL--MAAQGAAETAFPRAMLSVAS------DD-----P 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+      +GR+ D  + RTL+GPHR+DL   Y  K +  A  STGEQK +L+ + LA+A
Sbjct: 232 EDLGAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G AP+LLLDE++AHLDE +R ALF  +  +G+Q FMTGT   +F +L + A+ 
Sbjct: 292 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQR 351

Query: 365 MRISNHQALC 374
           + ++  Q L 
Sbjct: 352 IEVTEAQGLS 361


>gi|209966327|ref|YP_002299242.1| recombination protein F [Rhodospirillum centenum SW]
 gi|209959793|gb|ACJ00430.1| DNA replication and repair protein RecF, putative [Rhodospirillum
           centenum SW]
          Length = 377

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 144/371 (38%), Positives = 206/371 (55%), Gaps = 12/371 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG- 68
           L ++ FR+Y + RL  DA+  +  G NG GKTN+LEA+SFL+PGRG RRA  A++ R G 
Sbjct: 4   LTVTRFRSYLTARLDCDARPVVLTGPNGAGKTNLLEAVSFLAPGRGLRRARLAEIERTGP 63

Query: 69  ----SPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRI 122
               +   ++  A +E   G  +I    +     +   R +QI+    +    L +H+ +
Sbjct: 64  AEGWAGPGWAVAATLETPAGPVEIGTGRDPAAGPESERRLVQIDGRAAKGQIALARHVAV 123

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P MDR+F   +  RRRFLDR+VF  DP H  R+  +E  +R R RLL EG  D +W
Sbjct: 124 VWLTPQMDRLFLEAASGRRRFLDRLVFGFDPAHAGRLSQYEAALRERARLLREGPADPAW 183

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            +++E +MA LGV +  AR +M+  L++     V    FP   +++ G +D     +  A
Sbjct: 184 LTTLEDRMATLGVAVAAARADMVARLAAAAALGVGP--FPAPGMAMAGGVD-DLVAAGPA 240

Query: 243 LKEEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
           L  E A +          +      IGPHRSDL V    K +    GSTGEQK +L+ I 
Sbjct: 241 LAAEDALRRTLRDSRRRDAEAGGAAIGPHRSDLCVTCRAKEMPAERGSTGEQKALLIAIV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA+ARL+   TG AP+LLLDE++AHLD D+R ALF  +   GSQ +MTGTD  VF  L  
Sbjct: 301 LANARLMKAETGTAPLLLLDEVAAHLDADRRAALFAEILATGSQAWMTGTDAQVFAELGA 360

Query: 361 TAKFMRISNHQ 371
            A  +R+ + +
Sbjct: 361 AASHVRVEDSR 371


>gi|220920057|ref|YP_002495358.1| DNA replication and repair protein RecF [Methylobacterium nodulans
           ORS 2060]
 gi|219944663|gb|ACL55055.1| DNA replication and repair protein RecF [Methylobacterium nodulans
           ORS 2060]
          Length = 382

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 138/370 (37%), Positives = 205/370 (55%), Gaps = 7/370 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L   +FRN+ASL L         VG+NG GKTNILEA+S  +PGRG RRA +A + 
Sbjct: 8   RVTRLIARDFRNHASLDLGVSRPFVALVGENGAGKTNILEALSLFAPGRGLRRADFAAMA 67

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           R G P  F+    + G  G   +    E   TR++R+ R  +I+           +HLR+
Sbjct: 68  REGGPGGFAVSLNLAGPHGEHRVGTAWEPPQTREERAGRLCRIDGASAPSPTAFAEHLRV 127

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P +D +F G + ERRRFLDR+V A+D  H  R+   ER +R RNRLL E   D+ W
Sbjct: 128 VWLTPDLDALFRGPAGERRRFLDRLVLAVDAGHGARVSALERALRSRNRLLEERPDDTPW 187

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLDGKFDQSFC 241
             ++E ++AEL + + +AR E +  L  LI+    +   FP   + L G +D      + 
Sbjct: 188 LDAVEREVAELAIAVALARRETVERLDRLILASRDEASPFPWAGVRLEGEID-DLVAVWP 246

Query: 242 ALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           A+  E  +   L   R  D  + RTL GP  SDL+V +  K +     STGEQK +L+G+
Sbjct: 247 AVDAEDRFRAMLRQNRFRDRAAGRTLAGPQASDLLVRHGPKDVPAGTASTGEQKALLIGL 306

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHARL++  +G  P++LLDE++AHLD  +R  LF  +  +  Q++MTG D ++F  L 
Sbjct: 307 VLAHARLVAGMSGLPPLVLLDEVAAHLDPRRRAGLFDALEALPGQVWMTGADPALFAELG 366

Query: 360 ETAKFMRISN 369
                + +++
Sbjct: 367 NRGDLIAVAD 376


>gi|170738370|ref|YP_001767025.1| DNA replication and repair protein RecF [Methylobacterium sp. 4-46]
 gi|168192644|gb|ACA14591.1| DNA replication and repair protein RecF [Methylobacterium sp. 4-46]
          Length = 382

 Score =  255 bits (652), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 140/372 (37%), Positives = 203/372 (54%), Gaps = 7/372 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L   +FRN+ASL L         VG+NG GKTNILEA+S  +PGRG RRA +A + 
Sbjct: 8   RVTRLIARDFRNHASLDLGVGRPFVALVGENGAGKTNILEALSLFAPGRGLRRADFAAMA 67

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRI 122
           R G P  F+    VEG  G   +    E    R++R  R  +I+           + LR+
Sbjct: 68  REGGPGGFAVSLSVEGPHGEHRVGTAWEPPQGREERGGRQCRIDGASAPSPTAFAEQLRV 127

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P +D +F G + +RRRFLDR+V A+D  H  R+   ER +R RNRLL E   D  W
Sbjct: 128 VWLTPDLDALFRGPAGDRRRFLDRLVLAVDAGHGSRVSALERALRSRNRLLEERPEDGPW 187

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFC 241
             +IE ++AEL + + +AR E +  L  LI+      + FP   + L G +D      + 
Sbjct: 188 LDAIEREVAELAIAVALARRETVERLDRLILATRDAASPFPWAGVRLEGDID-DLVAVWP 246

Query: 242 ALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           A+  E  +   L   R  D  + RTL GP  SDL+V +  K +     STGEQK +L+G+
Sbjct: 247 AVDAEDRFRATLRQNRFRDRAAGRTLAGPQASDLVVRHGPKDVPAGTASTGEQKALLIGL 306

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHARL++  +G AP++LLDE++AHLD  +R  LF  +  +  Q++MTG D ++F  L 
Sbjct: 307 VLAHARLVAGMSGLAPLVLLDEVAAHLDPRRRAGLFDALEALPGQVWMTGADPALFAELG 366

Query: 360 ETAKFMRISNHQ 371
                + ++  Q
Sbjct: 367 SRGDVVAVAEGQ 378


>gi|92115636|ref|YP_575365.1| recombination protein F [Nitrobacter hamburgensis X14]
 gi|91798530|gb|ABE60905.1| DNA replication and repair protein RecF [Nitrobacter hamburgensis
           X14]
          Length = 379

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/376 (38%), Positives = 210/376 (55%), Gaps = 11/376 (2%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I+ L+++ FRNY +  L   +   + VG NG GKTN LEAIS LSPGRG RRA+  +V 
Sbjct: 5   RIRRLSLTHFRNYRAAALETRSDVVVLVGPNGAGKTNCLEAISLLSPGRGLRRATREEVA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV----RCLQINDVVIRVVDELNKHLR 121
                  ++  A VEG  GLA +   ++     +     RC +I+            HLR
Sbjct: 65  DHRGDGSWAVSAEVEGALGLATLGTGIDAPGSDAASSGRRC-RIDREPAGSAAAFGDHLR 123

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           + WL PSMD +F G + ERRRF DR+V AID  H  R+   ER +R RNRLL     D  
Sbjct: 124 MVWLTPSMDGLFGGAASERRRFFDRLVLAIDSDHSGRVSALERSLRSRNRLLETRNSDDH 183

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSF 240
           WC ++E Q AEL V +   R + +  L++ +        FP  ++ L G+++     +  
Sbjct: 184 WCDAVERQTAELAVAVAAMRAQTVTRLAAALEARGAASAFPSARIGLDGWMENALLTEPA 243

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            A+++ Y + L   R  D+ + RTL GPH +DL V Y  K++     STGEQK +L+G+ 
Sbjct: 244 TAVEDRYREILRANRARDAAAGRTLDGPHLTDLEVIYAPKSMPARDASTGEQKALLIGLV 303

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHA L++  TG AP+LLLDE+ AHLD D+R ALF  +  +G+Q++M+G D + F ++  
Sbjct: 304 LAHAGLVAEMTGIAPLLLLDEVVAHLDPDRRGALFGELKGLGAQVWMSGADPAAFANVGA 363

Query: 361 TAKFM-----RISNHQ 371
            ++       RI+  Q
Sbjct: 364 GSEIFDVDAGRIAQRQ 379


>gi|163733264|ref|ZP_02140708.1| recombination protein F [Roseobacter litoralis Och 149]
 gi|161393799|gb|EDQ18124.1| recombination protein F [Roseobacter litoralis Och 149]
          Length = 366

 Score =  252 bits (643), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 143/364 (39%), Positives = 213/364 (58%), Gaps = 13/364 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L IS FR++   RL+ DA+     G NG GKTN+LEA+S LSPGRG RRAS  D+
Sbjct: 3   LHLTELMISHFRSHRVARLMVDARPVALFGPNGAGKTNVLEAVSLLSPGRGLRRASAQDM 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           TR      +   A+V  +      S ++ET  ++ + R ++IN         L +  R+ 
Sbjct: 63  TRRPEALGWKVSAQVTSL----GQSQEIETWSEEGAARQVKINSKTA-AQTALGRVSRVL 117

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL+PSMDR++   +  RRRFLDRM  + +P H    + +E+ MR RNRLL     + SW 
Sbjct: 118 WLIPSMDRLWIEGAEGRRRFLDRMTLSFEPGHADATLAYEKAMRERNRLLKNMVREPSWY 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            ++E QMA+ GV I+  R   +  L++  ++      FP  +L L    +    +    L
Sbjct: 178 QALEVQMAQAGVVIDQNRRMALRQLAAAQLDATTA--FPAAELELI-HNEAPLPEGESTL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++ +A    D R  D  + RTLIGPHR+DLI  Y  K +     STGEQK +LV + LA+
Sbjct: 235 RDAFA----DSRSRDLAAGRTLIGPHRADLIGTYRAKGVAAKDCSTGEQKALLVSLILAN 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           AR ++  +G AP+LLLDE++AHLD D+R AL+  +T +G+Q +MTGT+KS+FD+L + A+
Sbjct: 291 ARALAQESGAAPLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTEKSLFDTLGDDAQ 350

Query: 364 FMRI 367
           +  I
Sbjct: 351 YFEI 354


>gi|217979344|ref|YP_002363491.1| DNA replication and repair protein RecF [Methylocella silvestris
           BL2]
 gi|217504720|gb|ACK52129.1| DNA replication and repair protein RecF [Methylocella silvestris
           BL2]
          Length = 398

 Score =  251 bits (642), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 143/372 (38%), Positives = 219/372 (58%), Gaps = 8/372 (2%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R  ++ L +++FR+YASL +   AQ  +  GDNG GKTN+LEA+S L+PGRG RRA  +D
Sbjct: 20  RRGVRRLTLADFRSYASLDMEILAQTVVLTGDNGAGKTNVLEALSLLTPGRGLRRAELSD 79

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRI 122
             R      F+    ++   G   +   +E     ++ R  +I+      +     H+R+
Sbjct: 80  CARNFGGGGFAVSIEIDAEGGRLQLGTGVEPNGGAALARKFRIDREPAPSIRAFCDHIRV 139

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS- 181
            WL P+MD +F G   +RRRFLDR+V ++D  H  R+   ER +R RNRLL E    +  
Sbjct: 140 VWLTPAMDGLFVGSPGDRRRFLDRLVLSLDADHGARVNALERALRSRNRLLEERGAGNER 199

Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238
            W  ++E ++AEL + +  AR E ++ L++LI +   +    FP  +LSL G +D +  +
Sbjct: 200 LWLDAVEREVAELAIAVAAARFETVSKLAALIAQAGPETEGGFPLAELSLDGDID-RLIE 258

Query: 239 SFCALK--EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           +  AL+  +EY K L D R  D+ + RTLIGP  SDL V +  K    +H STGEQK +L
Sbjct: 259 TRPALEAEDEYRKILRDNRGRDAAAGRTLIGPQSSDLAVRHARKQAAASHSSTGEQKALL 318

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           VG+ LA ARLI   +G AP++LLDEI+AH D  +R AL+ ++  +G+Q+++TG D S F 
Sbjct: 319 VGLILAQARLIKAMSGLAPLVLLDEIAAHFDPKRRAALYELLGALGAQVWLTGADPSAFA 378

Query: 357 SLNETAKFMRIS 368
            L   A+ ++++
Sbjct: 379 ELEGKAQMLQVT 390


>gi|146276062|ref|YP_001166221.1| recombination protein F [Rhodobacter sphaeroides ATCC 17025]
 gi|145554303|gb|ABP68916.1| DNA replication and repair protein RecF [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 363

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 137/369 (37%), Positives = 204/369 (55%), Gaps = 17/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++ + R+ FD +   FVG NG GKTN+LEAIS LSPGRG RRA+  ++
Sbjct: 4   LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNVLEAISLLSPGRGLRRAAADEI 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A V G+    ++    E    R VR         +V+  L + LRI W
Sbjct: 64  ARRPEALGWKVAAAVRGLHSDHEVETWAEGGGARQVRI--DGKAATQVM--LGRLLRIVW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR+++  +  RRRFLDR+  +  P H   ++D+E+ MR RNRLL E   D+ W +
Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPDHAEAVLDYEKAMRERNRLLKEQVADAHWHA 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E +MAE    I   R   +  L  +  +   +  FP   LS+                
Sbjct: 180 ALEGRMAEAARVIRAHREAAVARL--MAAQGAAETAFPRAMLSVA-----------SEDP 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+ A    +GR+ D  + RTL+GPHR+DL   Y  K +  A  STGEQK +L+ + LA+ 
Sbjct: 227 EDLAAAWAEGRRRDMAAGRTLLGPHRADLTAIYAAKGVPAAQCSTGEQKALLISLVLANG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G APILLLDE++AHLDE +R ALF  +  +G+Q +MTGT   +F +L   A+ 
Sbjct: 287 RALAEDLGAAPILLLDEVAAHLDEGRRAALFDEICALGAQAYMTGTGPELFTALGGRAQR 346

Query: 365 MRISNHQAL 373
           + ++  + L
Sbjct: 347 IEVTEAEGL 355


>gi|304319869|ref|YP_003853512.1| recombination protein F [Parvularcula bermudensis HTCC2503]
 gi|303298772|gb|ADM08371.1| recombination protein F [Parvularcula bermudensis HTCC2503]
          Length = 375

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/356 (40%), Positives = 204/356 (57%), Gaps = 5/356 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L +S FR+Y S    F+ + T F G NG GKTNILEA+S + PGRG RRA+  D+T
Sbjct: 7   RVTRLALSSFRSYRSAEWRFEKRQTAFYGPNGAGKTNILEALSLMGPGRGLRRAALGDLT 66

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           R GS   +     +   EG   ++++ E    +  R +Q++   +R    L   +R  WL
Sbjct: 67  RQGSDGGWGIGVDLGTGEGRRRLALRAEGVPLK--RHVQVDGEPVRSTGTLLDSVRFQWL 124

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P+ DR+F+    ERRRFLDRMV A  P H R  + FE  +R R   L  G+   +    
Sbjct: 125 TPAQDRLFTDSPGERRRFLDRMVLARCPSHGRDTLTFENALRQRQAALEAGW-PPAILEP 183

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFCALK 244
           +EAQMAE G+ I+ AR + + AL  +  E VQ+  FP   LSL+G F D     +  A +
Sbjct: 184 LEAQMAEAGIAIDEARRQTLAALQ-VNYERVQETAFPRAGLSLSGPFEDIAGIPTLAARR 242

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E YA  L  GR+ D  + RTL+GPHRSDL V +  K       STGEQK +L+G+ LAHA
Sbjct: 243 ESYADLLERGRRRDREAGRTLLGPHRSDLEVVHLGKDQPARLCSTGEQKALLIGLVLAHA 302

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
                 T    +LLLDE++AHLDED+R AL  ++  +   +FMTGTD+++FD+  +
Sbjct: 303 TASLAATQAPLVLLLDEVAAHLDEDRRAALAAMLDQLAICVFMTGTDRALFDAWGD 358


>gi|255262668|ref|ZP_05342010.1| DNA replication and repair protein RecF [Thalassiobium sp. R2A62]
 gi|255105003|gb|EET47677.1| DNA replication and repair protein RecF [Thalassiobium sp. R2A62]
          Length = 368

 Score =  245 bits (626), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 139/371 (37%), Positives = 210/371 (56%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L IS FR++  + L  DA+     G NGVGKTN++EAIS LSPGRG RR+S  D+
Sbjct: 4   LRLSELTISHFRSHKRVALEIDARPVAIYGANGVGKTNLIEAISLLSPGRGLRRSSAEDI 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           TR      +   A +  +  L +I    E    R V+     D        L +  R+ W
Sbjct: 64  TRRPEAVGWKVRAVLHSLNQLHEIETWSEGGSARQVKV----DSKASTQVALGRIGRLLW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+P+MDR++   +  RRRFLDR   + +P H   ++ +++ MR RNRLL +   D  W  
Sbjct: 120 LIPAMDRLWIEGAEGRRRFLDRATLSFEPTHAEAVLTYDKAMRERNRLLKDQVRDGHWYV 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +IEAQMAE G++I   R   I+ L  +  +   +  FP   L L   L+G  D+   A  
Sbjct: 180 AIEAQMAEAGLRITQNRAFAISEL--MAAQASARTAFPTAVLQL---LEG--DEGLPASV 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +++   L + R+ D  + RTLIGPHR+DL   Y  K I     STGEQK +L+ + LA+ 
Sbjct: 233 DDHRTALSENRQRDLYAGRTLIGPHRTDLGATYAAKDIPAKDCSTGEQKALLISLILANG 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++ + G  P+LLLDE++AHLD D+R AL+  +T +G+Q +MTGT   +FD+L + A++
Sbjct: 293 RALAQSFGAPPLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTGPELFDTLGDRAQY 352

Query: 365 MRISNHQALCI 375
           + +S   A  +
Sbjct: 353 LDVSEDCAALV 363


>gi|110677618|ref|YP_680625.1| recombination protein F [Roseobacter denitrificans OCh 114]
 gi|109453734|gb|ABG29939.1| DNA replication and repair protein RecF, putative [Roseobacter
           denitrificans OCh 114]
          Length = 366

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 140/360 (38%), Positives = 203/360 (56%), Gaps = 11/360 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +S FR++   R   D +     G NG GKTNILEA+S LSPGRG RRAS  D+TR   
Sbjct: 8   LMVSHFRSHRVARFALDQRPVALFGPNGAGKTNILEAVSLLSPGRGLRRASAQDMTRRPE 67

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              +   A+V  +    ++    +    R VR   IN         L +  R+ WL+PSM
Sbjct: 68  ALGWKITAQVMSLGQHQEVETWSQEGAARQVR---INGKTA-AQTALGRVSRVLWLIPSM 123

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           DR++   +  RRRFLDRM  + +P H    + +E+ MR RNRLL     + SW  ++E Q
Sbjct: 124 DRLWIEGAEGRRRFLDRMTLSFEPGHADATLAYEKAMRERNRLLKNMVREPSWYQALELQ 183

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA+ GV ++  R   +  L++   +      FP  +L L    D        AL++ +A 
Sbjct: 184 MAQAGVVVDQNRRMALRQLAAAQSDATTA--FPAAELELI-HNDAPLPDGETALRDAFA- 239

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
              D R  D  + RTL+GPHR+DLI  Y  K +     STGEQK +LV + LA+AR ++ 
Sbjct: 240 ---DSRSRDLAAGRTLVGPHRADLIGTYRAKGVAARDCSTGEQKALLVSLILANARALAQ 296

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
            +G AP+LLLDE++AHLD D+R AL+  +T +G+Q +MTGT+KS+FD+L + A++  I+ 
Sbjct: 297 DSGAAPLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTEKSLFDTLGDGAQYFEITE 356


>gi|114769642|ref|ZP_01447252.1| recombination protein F [alpha proteobacterium HTCC2255]
 gi|114549347|gb|EAU52229.1| recombination protein F [alpha proteobacterium HTCC2255]
          Length = 364

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 142/370 (38%), Positives = 210/370 (56%), Gaps = 20/370 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +RI +  L IS FR+Y ++ ++         G NG GKTNILEA+S LSPGRG RR+   
Sbjct: 2   SRIAVTNLKISHFRSYKNVEILTSGCPVALFGSNGAGKTNILEALSLLSPGRGLRRSRVD 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++ R      +   A ++ +  + +I         RSVR     D  +     L +  RI
Sbjct: 62  EMERKPEGIGWKISATLQSLGQIHEIETIYSGDGSRSVRI----DGKVTTQTALGRIARI 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WLVP MDR++   +  RRRFLDR+  + +P H +  +D+ER MR RN++L EG  D +W
Sbjct: 118 VWLVPVMDRLWVDGAEGRRRFLDRLSMSFEPSHAQYTLDYERAMRERNKMLKEGINDPAW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240
            S++E+QMAE G KI   R+  I+     IME     + +FP  +L L G      +++ 
Sbjct: 178 YSAVESQMAESGRKIEQNRLYTIDR----IMEAQTNVQTSFPTAQLGLVG----ANNEAI 229

Query: 241 CA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               LK+ +A    + R+ D  + RTLIGPHR DL   Y  K       STGEQK +LV 
Sbjct: 230 IVDDLKDAFA----NNRRADLFAGRTLIGPHRDDLTAMYSAKETAAKLCSTGEQKALLVS 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA+ R +S   G APILLLDE+SAHLD +++NAL+  +  +G+Q +MTGT K +F++ 
Sbjct: 286 LILANGRALSQDFGSAPILLLDEVSAHLDIERQNALYEEIISLGAQAWMTGTGKELFEAF 345

Query: 359 NETAKFMRIS 368
            + A+F+ ++
Sbjct: 346 GDRAQFLEVN 355


>gi|260431696|ref|ZP_05785667.1| recombination protein F [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415524|gb|EEX08783.1| recombination protein F [Silicibacter lacuscaerulensis ITI-1157]
          Length = 366

 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 143/368 (38%), Positives = 207/368 (56%), Gaps = 21/368 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++   R+  D +     G NG GKTNILEA+S  SPGRG RRAS A++
Sbjct: 3   LALTELTVSHFRSHKLARMALDGRPVALYGPNGAGKTNILEAVSLFSPGRGMRRASAAEM 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADIS---IKLET-RDDRSVRCLQINDVVIRVVDELNKHL 120
           TR   P           + GL D+     ++ET  +  + R ++I+      +D L K  
Sbjct: 63  TR--RPEALGW-----KLSGLLDVQGRRSEIETWSEGGAARQVRIDGKAASQID-LGKLA 114

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL+P+MDR++   +  RRRFLDR+  + DP H    + +E+ MR RNRLL E   D+
Sbjct: 115 RVVWLMPAMDRLWIEGAEGRRRFLDRVTLSFDPSHAEAALTYEKAMRERNRLLKEQVRDA 174

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQS 239
            W +++EAQMAE G +I+ AR   +NAL+ L     Q E  FP  +L L    +G    S
Sbjct: 175 HWYAALEAQMAETGHRIHTAR---MNALAQLRAAQEQAETAFPSAELELVQP-EGAMPDS 230

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E  A+  F     D  + RTL+GPHRSDL   +  K +  +  STGEQK +LV +
Sbjct: 231 AQDLLEALAESRF----RDLSAGRTLVGPHRSDLYGVFAAKGVAASECSTGEQKALLVSL 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L++AR ++   G  PILLLDE++AHLD D+R AL+  +  +G+Q +MT T   +F  L 
Sbjct: 287 ILSNARALAAQVGAPPILLLDEVAAHLDADRRAALYDEICALGAQAWMTATGPELFAELG 346

Query: 360 ETAKFMRI 367
           E A+   +
Sbjct: 347 ERAQAFEV 354


>gi|297184290|gb|ADI20407.1| recombinational DNA repair ATPase (recf pathway) [uncultured alpha
           proteobacterium EB080_L43F08]
          Length = 364

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 141/370 (38%), Positives = 210/370 (56%), Gaps = 20/370 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +RI +  L IS FR+Y ++ ++         G NG GKTNILEA+S LSPGRG RR+   
Sbjct: 2   SRIAVTNLKISHFRSYKNVEILTSGCPVALFGSNGAGKTNILEALSLLSPGRGLRRSRVD 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++ R      +   A ++ +  + +I         RSVR     D  +     L +  RI
Sbjct: 62  EMERKPEGIGWKISATLQSLGQIHEIETIYSGDGSRSVRI----DGKVTTQTALGRIARI 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WLVP MDR++   +  RRRFLDR+  + +P H +  +D+ER MR RN++L EG  D +W
Sbjct: 118 VWLVPVMDRLWVDGAEGRRRFLDRLSMSFEPSHAQYTLDYERAMRERNKMLKEGINDPAW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240
            S++E+QMAE G KI   R+  I+     IME     + +FP  +L L G      +++ 
Sbjct: 178 YSAVESQMAESGRKIEQNRLYTIDR----IMEAQTNVQTSFPTAQLGLVG----ANNEAI 229

Query: 241 CA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               LK+ +A    + R+ D  + RTL+GPHR DL   Y  K       STGEQK +LV 
Sbjct: 230 IVDDLKDAFA----NNRRADLFAGRTLVGPHRDDLTAMYSAKETAAKLCSTGEQKALLVS 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA+ R +S   G APILLLDE+SAHLD +++NAL+  +  +G+Q +MTGT K +F++ 
Sbjct: 286 LILANGRALSQDFGSAPILLLDEVSAHLDIERQNALYEEIISLGAQAWMTGTGKELFEAF 345

Query: 359 NETAKFMRIS 368
            + A+F+ ++
Sbjct: 346 GDRAQFLEVN 355


>gi|149186139|ref|ZP_01864453.1| recombinational DNA repair ATPase [Erythrobacter sp. SD-21]
 gi|148830170|gb|EDL48607.1| recombinational DNA repair ATPase [Erythrobacter sp. SD-21]
          Length = 359

 Score =  243 bits (619), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 214/364 (58%), Gaps = 19/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++ FRN+ +  L   A+  + VG+NG GKTN+LEA+S L+PGRG RRA+ AD+ + G 
Sbjct: 5   ISLTRFRNHEATELGATARFNLLVGENGAGKTNVLEALSLLAPGRGLRRANLADIVQHGV 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDR---SVRCLQINDVVIRVVDELNKHLRISWLV 126
              F   A +   EG     ++L T  +    S R ++IN         L + + ++WL 
Sbjct: 65  DEGFGVGASLLVDEGE---PVRLATYSESAQPSRRRVRINGADASAA-ALGEWIALTWLT 120

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P+MD +F+G + +RRRF+DRM  A+DP H +    +E  +R RNRLL++    +S+W  +
Sbjct: 121 PAMDGLFTGPAADRRRFIDRMALALDPAHAQHAARYEGALRERNRLLSDDRPPESAWLDA 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           IEAQM E G ++   R  +++ L + I     K   P  + +LT +  G  D +     E
Sbjct: 181 IEAQMVEHGGRLIAGRAALVDTLMARIAHMPSK---PFARPALT-YAPGGADSA-----E 231

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             ++ LF+GR+ D  ++RTL GPHR +L V +  K +  A  STGEQK +LV I LAHA 
Sbjct: 232 ALSQALFEGRQRDRAAQRTLAGPHRDELEVIHASKRVPAAQSSTGEQKAMLVAITLAHAG 291

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L +   G A ILLLDE++AHLD  +R ALF  +   G+Q++MTGT+ + FDS+ + A   
Sbjct: 292 LAAQ--GRAGILLLDEVAAHLDPVRRAALFDQLAASGAQVWMTGTEIAPFDSIADQAAVW 349

Query: 366 RISN 369
           +++ 
Sbjct: 350 KVAG 353


>gi|260574427|ref|ZP_05842431.1| DNA replication and repair protein RecF [Rhodobacter sp. SW2]
 gi|259023323|gb|EEW26615.1| DNA replication and repair protein RecF [Rhodobacter sp. SW2]
          Length = 366

 Score =  242 bits (618), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 137/366 (37%), Positives = 202/366 (55%), Gaps = 14/366 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L++S FR++ + RL FD +    VG NG GKTN+LEA+S LSPGRG RRA   ++
Sbjct: 4   LAITSLSLSHFRSHRAARLHFDGRPVALVGPNGAGKTNVLEAVSLLSPGRGLRRAGVDEI 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A + G+    ++    E    R VR     D        L +  R+ W
Sbjct: 64  ARRPEAMGWKVGADLRGIGAAHEVETWAEAGQARQVRI----DGKHATQAMLGRIARMLW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR++   +  RRRFLDRM  +  P H   ++ +E+ MR RNRLL +   D+ W  
Sbjct: 120 LVPAMDRLWIEAAEGRRRFLDRMTLSFAPDHAEAVLAYEKAMRDRNRLLKDQVTDAHWYG 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCAL 243
            +EAQMA  G  I   R     A++ L+   V  E  FP   L++    +G   ++  AL
Sbjct: 180 VLEAQMAASGAAIMAHRR---LAVARLLAAQVGAETAFPQADLAIVA--EGDLPETTDAL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            + +A    +GR+ D  + RTLIGPHR+DL   +  K +     STGEQK +L+ + LA+
Sbjct: 235 AQAFA----EGRRRDLAAGRTLIGPHRADLAARFAAKDVAADQCSTGEQKALLISLILAN 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           AR ++   G APILLLDE++AHLD D+R AL+  +  +G+Q  MTGT   +FD+L    +
Sbjct: 291 ARALAADLGVAPILLLDEVAAHLDADRRAALYDEICALGAQALMTGTGAELFDTLGARGQ 350

Query: 364 FMRISN 369
              +++
Sbjct: 351 TFAVAD 356


>gi|83309737|ref|YP_420001.1| recombination protein F [Magnetospirillum magneticum AMB-1]
 gi|82944578|dbj|BAE49442.1| Recombinational DNA repair ATPase [Magnetospirillum magneticum
           AMB-1]
          Length = 394

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 142/375 (37%), Positives = 205/375 (54%), Gaps = 14/375 (3%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R  ++ L +++FR Y +LRL  D++  +  G NG GKTNILEA+SFL PGRG RRA  AD
Sbjct: 14  RPAVRRLTLADFRCYRTLRLETDSRPVVLTGANGAGKTNILEALSFLVPGRGLRRAGAAD 73

Query: 64  VTRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           +TR G  + S ++  A ++G  G  +I    E   +R  R ++I+    +  D L   + 
Sbjct: 74  ITRHGLAAGSPWAVAATLDGPAGRVEIGTGREAGHER--RSVRIDGKPAKPGD-LAGLVS 130

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---- 177
             WL P+MDR+F   +  RRRFLDR+VF + P H      +E  MR R RLL        
Sbjct: 131 ALWLTPAMDRLFIEGASGRRRFLDRLVFGLVPGHGAEAGAYEHAMRERTRLLRAARDGGP 190

Query: 178 -FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
             D +W +++E  MA  G ++ +ARVE I  L       +    FP   L++ G ++G  
Sbjct: 191 RVDPAWMAALEEGMARHGTRVALARVESIRRLDEACRAGLGP--FPAAGLAVEGEIEGWL 248

Query: 237 DQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                    +E +   L   R  D  +    +GPHRSDL+V +  K +     STGEQK 
Sbjct: 249 AGGLSPDEAEERFRGALRVARARDEAAGAATMGPHRSDLMVRHVPKDLPAGQCSTGEQKA 308

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           VLV I LA  R+   + G AP+LLLDE++AHLDE +R ALF  +  + +Q +MTGTD  +
Sbjct: 309 VLVSIVLAQGRVQDQSGGRAPLLLLDEVAAHLDEVRRAALFDELCALKAQSWMTGTDAML 368

Query: 355 FDSLNETAKFMRISN 369
           F    E A+F R+++
Sbjct: 369 FAGFGERAQFFRVTD 383


>gi|298290589|ref|YP_003692528.1| DNA replication and repair protein RecF [Starkeya novella DSM 506]
 gi|296927100|gb|ADH87909.1| DNA replication and repair protein RecF [Starkeya novella DSM 506]
          Length = 385

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 141/369 (38%), Positives = 205/369 (55%), Gaps = 9/369 (2%)

Query: 14  EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS---- 69
           +FR+Y    +       + VG NG GKTN+LEAIS L+PGRG RRAS       G     
Sbjct: 13  DFRSYHHADIRAGDGPVVLVGPNGAGKTNLLEAISLLAPGRGLRRASLDQFAARGPEGTQ 72

Query: 70  PSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
            + ++  A VEG  G   +   LE    + RS RC +I+   +        H+R+ WL P
Sbjct: 73  AAGWAVSAVVEGAYGEVTLGTGLEADAGEARSRRC-RIDGEPVGSAAAFADHVRVVWLTP 131

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
            MD +F+G   ERRRFLDR+V A+D  H  R+   ER +R RNRLL E   D  +  ++E
Sbjct: 132 DMDGLFTGPPSERRRFLDRLVLAVDAEHGARVNALERALRSRNRLLEEPSTDPRYLDAVE 191

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFD-QSFCALKE 245
            ++A L V +  AR+E +  L++ I +     + FP   ++L G ++     +    +++
Sbjct: 192 HELAALAVAVAAARLETVRRLAANIAQSRDDTSLFPWASVALEGEVERALAREPATVVED 251

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           +Y   L   R  D  + RTL GPH +DL+V +  KAI  A GSTGEQK +L+G+ LAHAR
Sbjct: 252 QYRLALRASRPRDRAAGRTLEGPHLTDLLVGHGPKAIPAAQGSTGEQKALLIGLALAHAR 311

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+    G AP++LLD++ A+LD  +R ALF  +  +GSQ++MTG D S F +L   A+  
Sbjct: 312 LVGEMAGMAPVMLLDDVVAYLDPARRAALFEALEALGSQVWMTGADPSAFVALGARAERF 371

Query: 366 RISNHQALC 374
            +   Q L 
Sbjct: 372 EVRPGQVLS 380


>gi|254477354|ref|ZP_05090740.1| DNA replication and repair protein RecF [Ruegeria sp. R11]
 gi|214031597|gb|EEB72432.1| DNA replication and repair protein RecF [Ruegeria sp. R11]
          Length = 365

 Score =  237 bits (604), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 136/365 (37%), Positives = 206/365 (56%), Gaps = 11/365 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L  D +     G NG GKTNILEA+S  SPGRG RRAS AD+
Sbjct: 2   LALTALTLSHFRSHLRADLHLDGRPVAIHGANGAGKTNILEAVSLFSPGRGLRRASAADM 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P       R E   G     ++  +   ++ R ++I++     +D L +  R+ W
Sbjct: 62  AR--RPEELGWKLRAELRAGRQTYEVETWSEAGKA-RQVKIDNKSASQID-LGEICRVVW 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+P+MDR++   +  RRRFLDR+V + DP H    + +E+ MR RNRLL E   D++W  
Sbjct: 118 LIPAMDRLWIEGAEGRRRFLDRIVLSFDPGHAEATLAYEKAMRERNRLLKEQVRDAAWYR 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +E+QMA+ G +I+ AR   ++ L   + +   +  FP  +L L    DG    +   L+
Sbjct: 178 VLESQMAQAGHRIHAARTAAVDRLR--LAQEAAETAFPAAELELIQS-DGGLPDNAADLQ 234

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +A    +GR  D  + RTL+GPHR+DL+  Y  K +     STGEQK +LV + LA+A
Sbjct: 235 ESFA----EGRFRDLAAGRTLLGPHRTDLLGTYAAKGLPARDCSTGEQKALLVSLILANA 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R +    G APILLLDE+SAHLD ++R AL++ +  +G+Q +MTGT    F   +  A+ 
Sbjct: 291 RALIAAGGAAPILLLDEVSAHLDVNRRAALYQEILGLGAQAWMTGTGPEQFAEFDGQAQM 350

Query: 365 MRISN 369
           + + +
Sbjct: 351 LCVQD 355


>gi|86139415|ref|ZP_01057984.1| recombination protein F [Roseobacter sp. MED193]
 gi|85823918|gb|EAQ44124.1| recombination protein F [Roseobacter sp. MED193]
          Length = 365

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/371 (37%), Positives = 208/371 (56%), Gaps = 15/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L  D +     G NG GKTNILEA+S  SPGRG RRAS AD+
Sbjct: 2   LALTELTLSHFRSHLRAELHLDGRPVAIHGKNGAGKTNILEAVSLFSPGRGLRRASAADM 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R   P       +++ +    D + ++ET  ++ + R ++I++     +  L +  R+ 
Sbjct: 62  VR--RPEGLGW--KLKAVLQAPDQAYEIETWSEEGAARQVRIDNKASNQI-ALGQICRVV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WLVP MDR++   +  RRRFLDR+  + DP H    + +E+ MR RNRLL E   D++W 
Sbjct: 117 WLVPVMDRLWVEAAEGRRRFLDRIALSFDPSHAEATLTYEKAMRERNRLLKEQVRDAAWY 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCA 242
             +EAQM   G +I+ AR    +A+  LI    + E  FP   L L    +G+  QS   
Sbjct: 177 RVVEAQMGTAGHRIHTARC---SAVQRLIEAQDKAETAFPTAHLDLVQS-EGEMPQS--- 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            + +  + L +GR  D    R+L+GPHRSDLI  Y  K I     STGEQK +LV + LA
Sbjct: 230 -EADLVQALAEGRMRDMKVGRSLVGPHRSDLIGTYVHKGIAAKECSTGEQKALLVSLILA 288

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +AR ++ + G  PILLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L   A
Sbjct: 289 NARALTASEGAPPILLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGAELFAELGTRA 348

Query: 363 KFMRISNHQAL 373
           + + + + + +
Sbjct: 349 QVLEVGDMEGI 359


>gi|163743746|ref|ZP_02151120.1| recombination protein F [Phaeobacter gallaeciensis 2.10]
 gi|161383007|gb|EDQ07402.1| recombination protein F [Phaeobacter gallaeciensis 2.10]
          Length = 365

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 205/366 (56%), Gaps = 13/366 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L  D +     G NG GKTNILEA+S  SPGRG RRAS AD+
Sbjct: 2   LALTTLTLSHFRSHLRADLHLDGRPVAIHGANGAGKTNILEAVSLFSPGRGLRRASAADM 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123
            R   P       +++G   +A  S ++ET  +    R ++I++     +D L +  R+ 
Sbjct: 62  AR--RPEALGW--KLKGQLTVARQSYEVETWSEAGKARQVKIDNKAASQID-LGQICRVV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL+P+MDR++   +  RRRFLDR+V + DP H    + +E+ MR RNRLL E   D+ W 
Sbjct: 117 WLIPAMDRLWIEAAEGRRRFLDRIVLSFDPGHAEATLLYEKAMRERNRLLKEQIRDAGWY 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E QMAE G +I+ AR   ++ L   + +   +  FP  +L L    DG    +   L
Sbjct: 177 RVLETQMAESGHRIHAARTAAVDRLR--MAQEAAETAFPAAELELIQS-DGGLPDTAADL 233

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +     +GR  D  + RTL+GPHR+DL+  Y  K +     STGEQK +LV + LA+
Sbjct: 234 QEAFE----EGRFRDLAAGRTLLGPHRTDLLGTYAAKGVPARDCSTGEQKALLVSLILAN 289

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           AR +    G  PILLLDE+SAHLD  +R AL++ +  +G+Q +MTGT   +FD     A+
Sbjct: 290 ARALIAEGGAPPILLLDEVSAHLDVIRRAALYQEIVTLGAQAWMTGTGPELFDEFEGRAQ 349

Query: 364 FMRISN 369
              + +
Sbjct: 350 MFTVED 355


>gi|163738136|ref|ZP_02145552.1| DNA replication and repair protein RecF [Phaeobacter gallaeciensis
           BS107]
 gi|161388752|gb|EDQ13105.1| DNA replication and repair protein RecF [Phaeobacter gallaeciensis
           BS107]
          Length = 365

 Score =  236 bits (602), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 138/366 (37%), Positives = 205/366 (56%), Gaps = 13/366 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L  D +     G NG GKTNILEA+S  SPGRG RRAS AD+
Sbjct: 2   LALTTLTLSHFRSHLRADLHLDGRPVAIHGANGAGKTNILEAVSLFSPGRGLRRASAADM 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123
            R   P       +++G    A  S ++ET  +    R ++I++     +D L +  R+ 
Sbjct: 62  AR--RPEALGW--KLKGQLTAARQSYEVETWSEAGKARQVKIDNKAASQID-LGQICRVV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL+P+MDR++   +  RRRFLDR+V + DP H    + +E+ MR RNRLL E   D++W 
Sbjct: 117 WLIPAMDRLWIEAAEGRRRFLDRIVLSFDPGHAEATLLYEKAMRERNRLLKEQIRDAAWY 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E QMAE G +I+ AR   ++ L   + +   +  FP  +L L    DG    +   L
Sbjct: 177 RVLETQMAESGHRIHAARTAAVDRLR--MAQEAAETAFPAAELELIQS-DGGLPDTAADL 233

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +     +GR  D  + RTL+GPHR+DL+  Y  K +     STGEQK +LV + LA+
Sbjct: 234 QEAFE----EGRFRDLAAGRTLLGPHRTDLLGTYAAKGVPARDCSTGEQKALLVSLILAN 289

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           AR +    G  PILLLDE+SAHLD  +R AL++ +  +G+Q +MTGT   +FD     A+
Sbjct: 290 ARALIAEGGAPPILLLDEVSAHLDVIRRAALYQEIVTLGAQAWMTGTGPELFDEFEGRAQ 349

Query: 364 FMRISN 369
              + +
Sbjct: 350 MFTVED 355


>gi|259418051|ref|ZP_05741970.1| recombination protein F [Silicibacter sp. TrichCH4B]
 gi|259346957|gb|EEW58771.1| recombination protein F [Silicibacter sp. TrichCH4B]
          Length = 365

 Score =  235 bits (600), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 139/374 (37%), Positives = 212/374 (56%), Gaps = 19/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L  DA+     G+NG GKTNILEA+S  SPGRG RRAS AD+
Sbjct: 2   LALTSLFMSHFRSHLRADLHLDARPVAIHGNNGAGKTNILEAVSLFSPGRGIRRASAADM 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            R   P       +++G+      + ++ET  +  + R ++I++     V  L +  R+ 
Sbjct: 62  AR--RPEALGW--KLKGLLQTTGPTFEVETSSEGGNARQVKIDNKAASQV-ALGRIARVV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL+P+MDR++   +  RRRFLDR+  + DP H    + +E+ MR RNRLL +   D++W 
Sbjct: 117 WLIPAMDRLWIEGAEGRRRFLDRIALSFDPDHAEATLAYEKAMRERNRLLKDNVRDAAWY 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSF 240
             +E QMAE G +I+  RV+ ++ L++      QKE    FP  +L L    +G+  +S 
Sbjct: 177 RVLEGQMAEAGFRIHQTRVDAVSRLTA-----AQKEAETAFPVAELQLIQA-EGEMPESV 230

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+      L  GR  D    RTL+GPHRSDL+  Y  K +     STGEQK +LV + 
Sbjct: 231 DDLR----AALDAGRARDLAVGRTLVGPHRSDLMGAYAAKGLPAKDCSTGEQKALLVSLI 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA+AR +    G APILLLDE++AHLD ++R AL+  +  +G+Q +MTGT   +F  L +
Sbjct: 287 LANARALQAEEGSAPILLLDEVAAHLDGNRRAALYDEICALGTQAWMTGTGPELFQELGD 346

Query: 361 TAKFMRISNHQALC 374
            A+ + + +   + 
Sbjct: 347 RAQHLEVVDQNGVS 360


>gi|126738625|ref|ZP_01754330.1| recombination protein F [Roseobacter sp. SK209-2-6]
 gi|126720424|gb|EBA17130.1| recombination protein F [Roseobacter sp. SK209-2-6]
          Length = 375

 Score =  235 bits (599), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 203/361 (56%), Gaps = 13/361 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +S FR++    +  D +     G NG GKTNILEA+S  SPGRG RRAS A++TR   
Sbjct: 17  LTLSHFRSHLRAEMHLDGRPVALFGANGAGKTNILEAVSLFSPGRGIRRASAAEMTR--R 74

Query: 70  PSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           P       +++G+   +    ++ET  D+ + R ++I+      +  L +  R+ WLVP 
Sbjct: 75  PEGLGW--KLKGVLQTSAQPYEIETWSDEGAARQVRIDGKPANQI-ALGQICRVVWLVPV 131

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
           MDR++   +  RRRFLDR+  + DP H    + +E+ MR RN+LL E   D  W   +EA
Sbjct: 132 MDRLWVEAAEGRRRFLDRIALSFDPAHAEASLTYEKSMRERNKLLKEQVRDPVWYRVLEA 191

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           QMA  G +I++AR   I  L  L  +   +  FP  +L L    +G+  QS    + E+ 
Sbjct: 192 QMAASGHRIHMARTHAIEKL--LDAQRKAETAFPVAELQLLQS-EGEMPQS----EAEFV 244

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
             L + R  D    RTLIGPHRSDL+  Y  K +     STGEQK +LV + LA+AR + 
Sbjct: 245 DALAENRSRDLSVGRTLIGPHRSDLLGHYAAKGVAAKDCSTGEQKALLVSLILANARALM 304

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
             TG  P++LLDE++AHLD ++R AL+  +  +G+Q +MTGT   +F  L + A+ + +S
Sbjct: 305 QETGAPPLVLLDEVAAHLDANRRQALYDEICALGAQAWMTGTGSELFAELKDRAQMLEVS 364

Query: 369 N 369
            
Sbjct: 365 E 365


>gi|89069839|ref|ZP_01157174.1| recombination protein F [Oceanicola granulosus HTCC2516]
 gi|89044640|gb|EAR50756.1| recombination protein F [Oceanicola granulosus HTCC2516]
          Length = 366

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 139/365 (38%), Positives = 202/365 (55%), Gaps = 11/365 (3%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ I  L +S FR++    +  DA+     G NG GKTN+LEA+S LSPGRG RRA  A
Sbjct: 2   SRLAITRLTLSHFRSHKRAAVEVDARPVAIYGANGAGKTNLLEAVSILSPGRGLRRAGAA 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++TR      +   A V   +   +I    E    R VR     D        L + +R+
Sbjct: 62  EMTRRPETVGWKVTAEVAAPDRPHEIETWSEASAARQVRI----DGKAAAQVALGRVVRV 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL+PSMDR++   +  RRRFLDR V + D  H    + +E+ MR RNRLL +   D SW
Sbjct: 118 LWLIPSMDRLWIEGADGRRRFLDRAVLSFDADHAAETLAYEKAMRERNRLLKDEVRDPSW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             ++EAQMA  G +I+  RVE++ AL+    +   +  FP   L+L    +G+      A
Sbjct: 178 YGALEAQMARAGARIHAGRVEVLAALAE--AQEGAETAFPVATLALEQS-EGELPGDEAA 234

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L+E +A     GR  D  + RTL GPHR+DL   Y  K +     STGEQK +L+ + LA
Sbjct: 235 LRETFAA----GRGRDMAAGRTLAGPHRTDLAATYAAKDVPARDCSTGEQKALLISLILA 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +AR ++  TG  P+LLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L + A
Sbjct: 291 NARALAARTGMPPLLLLDEVAAHLDAARRAALYEEIVALGAQAWMTGTGPELFAELGDRA 350

Query: 363 KFMRI 367
           + + +
Sbjct: 351 QRLEV 355


>gi|126730158|ref|ZP_01745970.1| recombination protein F [Sagittula stellata E-37]
 gi|126709538|gb|EBA08592.1| recombination protein F [Sagittula stellata E-37]
          Length = 364

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/363 (36%), Positives = 205/363 (56%), Gaps = 11/363 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +S FR++  + +  D +     G NG GKTN++EA+S  SPGRG RRAS  D+ R
Sbjct: 3   LSHLTLSHFRSHKRVAIDVDLRPVAIWGPNGSGKTNLIEAVSLFSPGRGLRRASAQDMAR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 +     +EG +G  +I+   E    R+VR   I+D     V  L +  R  WL+
Sbjct: 63  RPESLGWKITGALEGPQGAHEIAFTSEGGGARAVR---IDDKPASQV-ALGRIARAVWLI 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P+MDR++   +  RRRFLDR+  +  P H +  +D+E+ MR RNRLL +   D  W +++
Sbjct: 119 PAMDRLWIEGAEGRRRFLDRIALSFFPDHAQAALDYEKAMRERNRLLKDMVRDPHWYTAL 178

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E QMAE G  +++ R+  ++ ++    +   +  FP   L L    DG+   S   L+  
Sbjct: 179 ERQMAEAGAALHVNRLAALDRIAE--AQDGAETRFPAATLDLV-HGDGEMPGSAAELR-- 233

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
               L + RK D  + RTL+GPHR+DLI  + +K +  A  STGEQK +L+ + L++AR 
Sbjct: 234 --IALEESRKRDLAAGRTLVGPHRADLIGTFAEKGVLAADCSTGEQKALLISLILSNARA 291

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           ++   G  PILLLDE++AHLD  +R ALF  +  +G+Q +MTGT   +F  L + A+ + 
Sbjct: 292 LAADEGHPPILLLDEVAAHLDAGRRAALFDEICALGAQAWMTGTGPELFAELGDRAQALE 351

Query: 367 ISN 369
           +S+
Sbjct: 352 VSD 354


>gi|296447171|ref|ZP_06889102.1| DNA replication and repair protein RecF [Methylosinus trichosporium
           OB3b]
 gi|296255336|gb|EFH02432.1| DNA replication and repair protein RecF [Methylosinus trichosporium
           OB3b]
          Length = 382

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 211/381 (55%), Gaps = 32/381 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ L +++FR+YA+L +   +      G+NG GKTNILEA+S  SPGRG R A  A+  
Sbjct: 11  RVRRLRLADFRSYAALDIAILSPLVALTGENGAGKTNILEALSLFSPGRGLRGAEIAEC- 69

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDR----------------SVRCLQINDVV 109
                      AR +G  G A +SI L++ DDR                  R  +I+ V 
Sbjct: 70  -----------ARRQGAGGFA-VSIDLDS-DDRLMQLGHGFEIGAPGETPARRFRIDRVP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
           +        HLR  WL P+MD +F+G + +RRRFLDR+  ++D  H  R    ER +R R
Sbjct: 117 VSSARAFADHLRPLWLTPAMDGLFAGSAGDRRRFLDRLTMSVDAEHGARAARLERALRNR 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHIKLSL 228
           NRLL E   DS W ++ E ++A L V +  AR + +  L +LI  E      FP  +LS+
Sbjct: 177 NRLLAEEQADSRWLTAAEREIAALAVAVAAARRDTVERLRALIAAERDDASPFPFAELSI 236

Query: 229 TGFLDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
            G L+    ++    +++ Y   L   R+ D+ + RTL GP  SDL+V +  K       
Sbjct: 237 DGELERLVGEEPALRVEDHYRSVLAAMRRRDAAAGRTLSGPQASDLLVRHGPKDEAARAC 296

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           STGEQK +L G+ LAHARL++ TTG AP+LLLDEI+AH D  +R ALF  +  IG Q++M
Sbjct: 297 STGEQKALLTGLVLAHARLVAATTGTAPLLLLDEIAAHFDALRREALFEALARIGGQVWM 356

Query: 348 TGTDKSVFDSLNETAKFMRIS 368
           TG D  VFDSL   A  +R++
Sbjct: 357 TGADPRVFDSLTGRADLLRVT 377


>gi|148555709|ref|YP_001263291.1| recombination protein F [Sphingomonas wittichii RW1]
 gi|259563672|sp|A5VA37|RECF_SPHWW RecName: Full=DNA replication and repair protein recF
 gi|148500899|gb|ABQ69153.1| DNA replication and repair protein RecF [Sphingomonas wittichii
           RW1]
          Length = 356

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 203/361 (56%), Gaps = 22/361 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +++FR+YAS  +       +  G+NG GKTNILEA+S L PGRG R A+ A++
Sbjct: 1   MTVARLMLTDFRSYASATIAAGPGFVVLTGENGAGKTNILEAVSMLGPGRGLRGAALAEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNKHLR 121
            R G    F+  A       L+D  ++L T    +    R ++IN         L + L 
Sbjct: 61  AREGGAGGFAVAAE------LSD-EVRLGTGTTPAAPERRQVRINGAPASAT-ALGEWLS 112

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDS 180
           + WL P+MDR+F+  +  RRRFLDR+V AI+P H R +  ++  MR RN+LL  EG  D+
Sbjct: 113 LLWLTPAMDRLFTEGAEGRRRFLDRLVLAIEPGHARHVSRYDAAMRARNKLLAAEGPPDA 172

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W  ++EAQ+ + G  I  AR   + AL+ L +       F    L++ G++  +     
Sbjct: 173 AWLDALEAQLGQHGQAIAEARARTVTALA-LRIAAEPDAPFARAALAIEGWVPSR----- 226

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                  A++L  GR  D  + RTL GPHR DL V +  K    A  STGEQK +L+GI 
Sbjct: 227 ----RPLAEELRHGRARDVAAGRTLSGPHRQDLAVSHAAKQQPAARASTGEQKALLLGIV 282

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHA L++   G  PILL+DE++AHLD  +R ALF  +   G QI++TGT++++FD + E
Sbjct: 283 LAHADLVAERRGRRPILLMDEVAAHLDPVRRAALFERLGRSGGQIWLTGTERALFDGIGE 342

Query: 361 T 361
            
Sbjct: 343 A 343


>gi|254511198|ref|ZP_05123265.1| DNA replication and repair protein RecF [Rhodobacteraceae bacterium
           KLH11]
 gi|221534909|gb|EEE37897.1| DNA replication and repair protein RecF [Rhodobacteraceae bacterium
           KLH11]
          Length = 365

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 136/371 (36%), Positives = 208/371 (56%), Gaps = 23/371 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++   RL  D +     G NG GKTNILEA+S  SPGRG RRAS A++
Sbjct: 3   LALTELTVSHFRSHKLARLFLDGRPVALHGPNGAGKTNILEAVSLFSPGRGIRRASAAEM 62

Query: 65  TRIGSPSFF----STFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKH 119
           TR   P       S   R +G       S ++ET  +  + R +++++     +D L + 
Sbjct: 63  TR--RPEALGWKLSGVLRAQGQ------SFEVETWSEGGAARQVRVDEKAASQID-LGRL 113

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
            R+ WL+PSMDR++   +  RRRFLDR+  + +P H +  + +E+ MR RNRLL E   D
Sbjct: 114 TRVVWLIPSMDRLWIEGAEGRRRFLDRIALSFEPSHAQASLTYEKAMRERNRLLKEQVRD 173

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQ 238
           + W +++E QMAE+G +I+  R   + AL  L     Q E  FP   L L      + + 
Sbjct: 174 AHWYAALEGQMAEMGHRIHSTR---LTALEHLRAAQDQAETAFPSADLELV-----QTEG 225

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +     E+  + L + R  D  + RTL+GPHRSDL   +  K +     STGEQK +LV 
Sbjct: 226 AMPETAEDLHEALNESRFRDLAAGRTLVGPHRSDLYGVFAAKGVPAKDCSTGEQKALLVS 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + L++AR ++   G  PI+LLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L
Sbjct: 286 LILSNARALAAMVGAPPIVLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFAEL 345

Query: 359 NETAKFMRISN 369
            + A+ + +S+
Sbjct: 346 GDRAQTLIVSD 356


>gi|254295378|ref|YP_003061401.1| DNA replication and repair protein RecF [Hirschia baltica ATCC
           49814]
 gi|254043909|gb|ACT60704.1| DNA replication and repair protein RecF [Hirschia baltica ATCC
           49814]
          Length = 396

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 213/379 (56%), Gaps = 10/379 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +  FRN+AS  L  DA+     G NG GKTN+LEA+S L PG+G R AS   +
Sbjct: 20  LTIQRLALHNFRNHASTVLEMDARPVCLFGANGAGKTNLLEAVSMLGPGKGLRAASLPSL 79

Query: 65  TRI-GSPSFFSTFARVEGMEGLA---DISIKLE-TRDDRSVRCLQINDVVIRVVDELNKH 119
            R+    S    +A    M+       IS+ L+ + D R+ R  +++D  +   + L + 
Sbjct: 80  VRVEAGESVVGGWAISARMDDAGLDRQISVGLDVSPDGRTRRVAKLDDAPVSQTN-LAEL 138

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           +R+ WL P+MDR+F+G + +RR+F DR V A  P H      +E+ MR RN L  +G  D
Sbjct: 139 VRVVWLTPAMDRVFAGPAGDRRKFYDRQVLAHVPAHGSASAAYEKAMRERNALFEQGRMD 198

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238
           +SW  ++EA++AE G  I + R   +  + + I +   + +FP   LS+ G  +    Q 
Sbjct: 199 ASWLDALEARLAEAGAAIAVNRATALKRIQAAI-DARPEGHFPKADLSIAGKFEAMALQG 257

Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S  A++   +  L  GR  DS++ RTL G HRSDL V +  K +  A  STGEQK +L+
Sbjct: 258 DSQAAIEGAISDSLKVGRARDSVAGRTLAGVHRSDLQVVHRPKQLPAAQCSTGEQKALLM 317

Query: 298 GIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           G+ LA+A+ L+       P+LLLDE +AHLD  +R AL+  +  +G Q ++TGTD ++FD
Sbjct: 318 GMILANAKALLEGDFAPNPLLLLDEAAAHLDSVRRAALYDELAALGGQAWLTGTDAALFD 377

Query: 357 SLNETAKFMRISNHQALCI 375
           +  + A+   + N Q + +
Sbjct: 378 AFGDRAQRFCVENGQVIKV 396


>gi|323137241|ref|ZP_08072320.1| DNA replication and repair protein RecF [Methylocystis sp. ATCC
           49242]
 gi|322397599|gb|EFY00122.1| DNA replication and repair protein RecF [Methylocystis sp. ATCC
           49242]
          Length = 391

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 209/366 (57%), Gaps = 11/366 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +S+FR+YA  R   +A+     G+NG GKTN+LEA+S  SPGRG RRA  A+  R
Sbjct: 26  VRRLTLSDFRSYAQARCDIEARLVALSGENGAGKTNVLEALSMFSPGRGLRRAELAECAR 85

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                 F+    +E    +  ++ +L    T D    R  +I+   I        H+R+ 
Sbjct: 86  RDGAGGFAVSIEIE----IGGVTTQLGHGLTEDGE--RRFRIDRAPIGSARAFADHIRVL 139

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P+MD +F+G + ERRRFLDR+   +D  H  R+   ER +R RNRLL EG  D  W 
Sbjct: 140 WLTPAMDGLFAGPAGERRRFLDRLALGVDADHGARVNRLERALRNRNRLLEEGVSDRRWL 199

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-A 242
            + E ++A +GV    AR E ++ LS+LI    +   FP  ++++ G ++    ++   A
Sbjct: 200 DAAEQEIASIGVAAAAARRETVSRLSALIASGGESP-FPWAEIAIQGEIETMLAEAPALA 258

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++ + + L   R+ D+ + RTL GP  SDL V +  K       STGEQK +L+G+ LA
Sbjct: 259 VEDRFREMLAATRRRDAAAGRTLTGPQTSDLAVRHGPKNEAARDCSTGEQKALLMGLTLA 318

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HARL++  T  AP+LLLDE++AH D  +R ALF  +  +G Q++MTG D  +F SL   A
Sbjct: 319 HARLVTAMTRKAPLLLLDEVAAHFDVKRREALFDELESLGGQVWMTGADPLLFASLQGRA 378

Query: 363 KFMRIS 368
           + ++++
Sbjct: 379 EMLQVT 384


>gi|56695076|ref|YP_165423.1| recombination protein F [Ruegeria pomeroyi DSS-3]
 gi|56676813|gb|AAV93479.1| DNA replication and repair protein RecF [Ruegeria pomeroyi DSS-3]
          Length = 366

 Score =  230 bits (587), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 206/370 (55%), Gaps = 17/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + IS FR++  LRL  D +     G NG GKTNILEA+S  SPGRG RRAS A++
Sbjct: 3   LALTAITISHFRSHRLLRLSLDERPVAIHGPNGAGKTNILEAVSMFSPGRGMRRASAAEM 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           TR   P         E + G     I+  + +  + R ++I+D     V  L + +R+ W
Sbjct: 63  TR--RPEVLGWKLSAELVAGHQRHEIETWS-EGGAARQVRIDDKAASQV-ALGRLVRMVW 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVPSMDR++      RRRFLDRM  + +P H   ++ +E+ MR RNRLL E   D+ W  
Sbjct: 119 LVPSMDRLWIEGPEGRRRFLDRMTMSFEPDHAEAVLVYEKAMRERNRLLREQVRDAHWYL 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E QMA  G +I+ AR   + AL++       + +FP  +L L    +G   +S   L+
Sbjct: 179 ALETQMAAAGHRIHAARQSTLTALAAAQT--QAETSFPTAELELIQ-TEGALPESEGDLR 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E  A+  F     D  + RTL+GPHRSDL   Y  K +  +  STGEQK +LV + LA+A
Sbjct: 236 EALAESRF----RDLAAGRTLVGPHRSDLYGVYAAKGVPASDCSTGEQKALLVSLILANA 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  P+LLLDEI+AHLD  +R AL+  +  +G+Q +MTGT   +F  L   A+ 
Sbjct: 292 RALARQVGAPPVLLLDEIAAHLDAGRRAALYDEICALGAQAWMTGTGPELFSELGARAQT 351

Query: 365 MRISNHQALC 374
           +      ALC
Sbjct: 352 I------ALC 355


>gi|56552480|ref|YP_163319.1| recombination protein F [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762427|ref|ZP_04760505.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|56544054|gb|AAV90208.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373021|gb|EER62679.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 376

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 139/372 (37%), Positives = 208/372 (55%), Gaps = 18/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L++ +FR++  +RL  +A   I  G+NGVGKTNILEAIS LSPGRGFR +   D+ R
Sbjct: 3   ISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDLVR 62

Query: 67  IGSPSFFSTFARVEGMEG---LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                 F+  A++  +E    +  ++I +      S R +++N V     + L++ L I 
Sbjct: 63  REGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTTSA-NALSEWLAIL 121

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
           WL P+MDR+F   +  RRRFLDR+   I P H R    +E  MR RN+LL+ E  +D  W
Sbjct: 122 WLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGYDPLW 181

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGK----- 235
              +E  MAE    I +AR ++++ LS    E  ++E+  F    L+L   +D +     
Sbjct: 182 LDGLEQIMAEQATHILLARRQLVDLLSE---EIAKQEDGLFAKADLALEEGVDSRDLVTH 238

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
             +    L +   +K    R  D+   RTL G HR+DL V +  KA+  A  STGEQK +
Sbjct: 239 NSEEIMPLLQNIWQK---SRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQSSTGEQKAL 295

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           L+G+ LA   LI+   G  P+LLLDE++AHLD  +R  LF I+   G Q++MTGT+ S+F
Sbjct: 296 LLGLVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLF 355

Query: 356 DSLNETAKFMRI 367
           ++  E A + ++
Sbjct: 356 ETAGEAACYFQL 367


>gi|197106846|ref|YP_002132223.1| recombinational DNA repair ATPase [Phenylobacterium zucineum HLK1]
 gi|196480266|gb|ACG79794.1| recombinational DNA repair ATPase [Phenylobacterium zucineum HLK1]
          Length = 377

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/373 (37%), Positives = 206/373 (55%), Gaps = 14/373 (3%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R  +  L++++FR+YAS  L  D +     G NG GKTN+LEA+SFL PGRG R AS A+
Sbjct: 2   RTALTRLSLTDFRSYASAELALDGRPVWLAGPNGSGKTNLLEAVSFLIPGRGLRGASIAE 61

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE------LN 117
           V R            V      A   ++L T     V     +  V+RV  E      L 
Sbjct: 62  VGRRLPGETVGRAWAVSATVAAAGDEVRLGT----GVEQPGASRRVVRVDGEPAPPGRLA 117

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           +H+R  WL P+ DR+F   + ERRRFLDR+VFA +P H   +  +E+ MR R RLLTEG 
Sbjct: 118 EHMRQVWLTPAQDRLFLEGAGERRRFLDRLVFAAEPGHAAHVQAYEKAMRERMRLLTEGP 177

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GK 235
            D +W  ++EA++AE G  +  +R   + AL++ I    ++  FP  +LSLTG  +    
Sbjct: 178 ADPTWLDALEARLAEAGALMADSRSRTLAALAAEIGARGER-PFPQARLSLTGAWEQMAA 236

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
                  ++   A+ L + R  D+ + R L GPHR DL V + +K    A  STGEQK +
Sbjct: 237 EGAGIADVEARLARALREARDRDAAAGRALTGPHRGDLAVVHAEKDRAAAECSTGEQKAL 296

Query: 296 LVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           ++ + LA A  ++   +  AP+LLLDE++AHLD  +R ALF  +  +G Q F+TGTD+ +
Sbjct: 297 ILNLVLAQAARLARADSAPAPVLLLDEVAAHLDRVRRAALFDEIEALGLQAFLTGTDEHL 356

Query: 355 FDSLNETAKFMRI 367
           F++L    +  R+
Sbjct: 357 FEALAGRGQGWRM 369


>gi|310816809|ref|YP_003964773.1| recombination protein F [Ketogulonicigenium vulgare Y25]
 gi|308755544|gb|ADO43473.1| recombination protein F [Ketogulonicigenium vulgare Y25]
          Length = 370

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 197/368 (53%), Gaps = 12/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L FD +   FVG NG GKTN++EAIS LSPGRG RRA   D+
Sbjct: 4   LALNALKLSHFRSHKRAELAFDGRPVAFVGSNGAGKTNLIEAISLLSPGRGLRRAVTEDL 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A +  +    ++       + R+VR   I+D     V  L   + I W
Sbjct: 64  ARRPESVGWKVQASLTRLHESHEVETAAAPGESRTVR---IDDKPAPQV-ALAAIMPIVW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR++   +  RRRFLDRMV +  P H    +++E+ MR RNRLL +G  D+ W +
Sbjct: 120 LVPAMDRLWIEAAEGRRRFLDRMVMSFAPDHAALALEYEKAMRQRNRLLKDGVRDAHWYA 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +IE  MA+ G ++   R+ +I  L     +      FP   L+LT       D++     
Sbjct: 180 AIERIMAKSGAEMTRNRLALIERLRD--AQASADTAFPAADLTLTSEGPSPVDEA----- 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R  D ++ R+L+GPHR+DL   +  K +  A  STGEQK +L+ + LA+ 
Sbjct: 233 -ALADALEGSRPRDLLAGRSLVGPHRADLSAIWQAKGMIAADCSTGEQKALLISLVLANG 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G APILLLDE+SAHLD  +R AL+  +T +  Q FMTGT+  +F  L   A+ 
Sbjct: 292 RALAEDRGVAPILLLDEVSAHLDAARRAALYDEITAMAGQTFMTGTEVQLFAGLGPRAQG 351

Query: 365 MRISNHQA 372
             +    A
Sbjct: 352 FAVEEGPA 359


>gi|149202935|ref|ZP_01879906.1| recombination protein F [Roseovarius sp. TM1035]
 gi|149143481|gb|EDM31517.1| recombination protein F [Roseovarius sp. TM1035]
          Length = 369

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 136/361 (37%), Positives = 203/361 (56%), Gaps = 13/361 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +S FR++ S RL+ DA+     G NG GKTN++EAIS LSPGRG RRA+  D+ R   
Sbjct: 9   LTLSHFRSHKSGRLLLDARPVAIHGPNGAGKTNLIEAISLLSPGRGLRRAAAQDMARRPE 68

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              +   A +  +  + ++    E    R VR     D        L +  R+ WLVP+M
Sbjct: 69  ALGWKITAILNSLHQVHEVETFAEGTAARQVRI----DSKTATQLALGRIARLLWLVPAM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           DR++   +  RRRFLDRM  +  P H    + +++ MR RNRLL +   D+ W  ++E Q
Sbjct: 125 DRLWIEGADGRRRFLDRMTMSFIPAHAEVTLAYDKAMRERNRLLKDQVRDAQWYLALERQ 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           MA+ G +I+  R    +AL+ ++   +Q E  FP  +L LT   +G+   S   L++  A
Sbjct: 185 MADAGAEIHANRQ---HALALIMGAQMQAETAFPTAELELTQT-EGEMPDSADDLRQALA 240

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           +  F     D M+ RTLIGPHR+DL   Y  K +  A  STGEQK +LV + LA+AR ++
Sbjct: 241 ESRF----RDLMAGRTLIGPHRADLYGVYAAKGVPAADCSTGEQKALLVSLILANARALA 296

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
              G  P+LLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L   A+ + ++
Sbjct: 297 RDFGAPPLLLLDEVAAHLDATRRAALYDEICALGAQAWMTGTGPELFSELGNRAQHIHVT 356

Query: 369 N 369
           +
Sbjct: 357 D 357


>gi|99079844|ref|YP_611998.1| recombination protein F [Ruegeria sp. TM1040]
 gi|99036124|gb|ABF62736.1| DNA replication and repair protein RecF [Ruegeria sp. TM1040]
          Length = 357

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 138/359 (38%), Positives = 205/359 (57%), Gaps = 13/359 (3%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +S FR++    L  D +     G+NG GKTNILEA+S  SPGRG RRAS AD+ R   P 
Sbjct: 1   MSHFRSHLRADLHLDTRPVAIHGNNGAGKTNILEAVSLFSPGRGLRRASAADMAR--QPE 58

Query: 72  FFSTFARVEGMEGLADISIKLETRDD-RSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130
                 ++ G+   +  + ++ET  +  + R ++I++     V  L +  R+ WLVP+MD
Sbjct: 59  ALGW--KLRGVLQSSGQAYEVETSSEVGNARQVKIDNKSASQV-ALGRIARVVWLVPAMD 115

Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190
           R++   +  RRRFLDR+  + DP H    + +E+ MR RNRLL +   D++W   +E QM
Sbjct: 116 RLWIEGAEGRRRFLDRIALSFDPDHAEASLSYEKAMRERNRLLKDNVRDAAWYRVLEGQM 175

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           AE G +I+ AR++ +  L++   +   +  FP  +L L    +G    S  AL+E     
Sbjct: 176 AETGFRIHQARMDAVARLTA--AQAEAETAFPVAQLQLV-QAEGDMPASAEALRE----M 228

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
           L  GR  D    RTL+GPHRSDLI  +  K +     STGEQK +LV + LA+AR +   
Sbjct: 229 LDAGRMRDLTVGRTLVGPHRSDLIGTFLAKGLPAKDCSTGEQKALLVSLILANARALQAQ 288

Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
            G APILLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L   A+ + +S+
Sbjct: 289 EGAAPILLLDEVAAHLDAGRRAALYDEICALGTQAWMTGTGPELFQELGSRAQHLTVSD 347


>gi|83855144|ref|ZP_00948674.1| recombination protein F [Sulfitobacter sp. NAS-14.1]
 gi|83842987|gb|EAP82154.1| recombination protein F [Sulfitobacter sp. NAS-14.1]
          Length = 365

 Score =  229 bits (584), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 139/361 (38%), Positives = 199/361 (55%), Gaps = 16/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +S FR++    +  DA+     G NG GKTNILEA+S LSPGRG RR+S +D+TR   
Sbjct: 9   LTLSHFRSHKRAVIHCDARPVSIFGPNGAGKTNILEAVSLLSPGRGLRRSSASDMTRRPE 68

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              +   A +  +  + ++ I  E    R VR     D        L +  R+ WL+PSM
Sbjct: 69  ALGWKITAHLHSLGQIHEVEIWSEAGAARQVRI----DGKATAQTGLGRIARVLWLIPSM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           DR++   +  RRRFLDRM  +  P H  + + +E+ MR RNRLL +   + SW  ++E Q
Sbjct: 125 DRLWIEGAEGRRRFLDRMTLSFLPDHADQSLAYEKAMRERNRLLKDMVREPSWYVALEQQ 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           MAE G  I+  RV  + A++       Q E  FP      T  LD   D    A  E   
Sbjct: 185 MAEAGSAIHANRVAALQAITE---AQAQAETAFP------TATLDLICDMPPTA--EGLR 233

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           + L D R  D  + RTLIGPHR+DL   Y  K +     STGEQK +LV + LA+AR ++
Sbjct: 234 QALADNRMRDLSAGRTLIGPHRADLEGVYAAKDVPARDCSTGEQKALLVSLILANARALA 293

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
              G  P+LLLDE++AHLD D+R AL+  ++ +G+Q +MTGT + +FD+L   A+ + ++
Sbjct: 294 ADFGAPPLLLLDEVAAHLDADRRAALYDELSALGAQAWMTGTGEELFDTLGPRAQRLEVT 353

Query: 369 N 369
            
Sbjct: 354 E 354


>gi|254467269|ref|ZP_05080680.1| DNA replication and repair protein RecF [Rhodobacterales bacterium
           Y4I]
 gi|206688177|gb|EDZ48659.1| DNA replication and repair protein RecF [Rhodobacterales bacterium
           Y4I]
          Length = 365

 Score =  228 bits (582), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 134/377 (35%), Positives = 202/377 (53%), Gaps = 35/377 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L FD +     G+NG GKTNILEA+S  SPGRG RRAS A++
Sbjct: 2   LALTALTLSHFRSHLRAELRFDGRPVAIYGNNGAGKTNILEAVSLFSPGRGLRRASAAEM 61

Query: 65  TRIGSPSFFSTFARVE------------GMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            R   P       + E              EG A   +K+   D++S   L +  V    
Sbjct: 62  AR--QPEALGWKLKGELRAPRQAYEVETWSEGGAARQVKI---DNKSASQLALGQVA--- 113

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
                   R+ WL+P+MDR++   +  RRRFLDR+  + +P H    + +E+ MR RNRL
Sbjct: 114 --------RVVWLIPAMDRLWIEAAEGRRRFLDRIALSFEPGHAEASLVYEKAMRERNRL 165

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           L E   D++W   +E +MA  G +I+ ARV+ +  L     E   +  FP  +L L    
Sbjct: 166 LKEQVRDAAWYRVLEDRMAAAGHRIHAARVQAVELLQQAQAEA--ETAFPAAELELL--- 220

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
             + + S  + + ++ + L + R  D  + RTL+GPHR+DL+  Y  K I     STGEQ
Sbjct: 221 --QSEGSMPSSETDFKEALEESRFRDLAAGRTLVGPHRTDLLGTYRAKGIPAKDCSTGEQ 278

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           K +LV + LA+AR ++   G  PILLLDE++AHLD  +R AL+  +  +G+Q +MTGT  
Sbjct: 279 KALLVSLILANARALAQREGAPPILLLDEVAAHLDAGRRAALYDEICALGTQAWMTGTGP 338

Query: 353 SVFDSLNETAKFMRISN 369
            +F  L   A+ + +S+
Sbjct: 339 ELFAELEGRAQVLEVSD 355


>gi|260753853|ref|YP_003226746.1| recombination protein F [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258553216|gb|ACV76162.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 376

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 208/372 (55%), Gaps = 18/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L++ +FR++  +RL  +A   I  G+NGVGKTNILEAIS LSPGRGFR +   D+ R
Sbjct: 3   ISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDLVR 62

Query: 67  IGSPSFFSTFARVEGMEG---LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                 F+  A++  +E    +  ++I +      S R +++N V     + L++ L I 
Sbjct: 63  REGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTTSA-NALSEWLAIL 121

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
           WL P+MDR+F   +  RRRFLDR+   I P H R    +E  MR RN+LL+ E  +D  W
Sbjct: 122 WLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGYDPLW 181

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGK----- 235
              +E  MAE    I +AR ++++ LS    E  ++E+  F    L+L   +D +     
Sbjct: 182 LDGLEQIMAEQATHILLARRQLVDLLSE---EIAKQEDGLFAKADLALEEGVDSRDLVTH 238

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
             +    L +   +K    R  D+   RTL G HR+DL V +  KA+  A  STGEQK +
Sbjct: 239 NSEEIMPLLQNIWQK---SRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQSSTGEQKAL 295

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           L+G+ LA   LI+   G  P+LLLDE++AHLD  +R  LF I+   G Q++MTGT+ S+F
Sbjct: 296 LLGLVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLF 355

Query: 356 DSLNETAKFMRI 367
           ++  + A + ++
Sbjct: 356 ETAEDAACYFQL 367


>gi|84684519|ref|ZP_01012420.1| recombination protein F [Maritimibacter alkaliphilus HTCC2654]
 gi|84667498|gb|EAQ13967.1| recombination protein F [Rhodobacterales bacterium HTCC2654]
          Length = 371

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/365 (35%), Positives = 198/365 (54%), Gaps = 9/365 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +S FR++    L  DA+     G NG GKTNILEA+S +SPGRG R AS  D+
Sbjct: 4   LYLRELTLSHFRSHRRAVLSLDARPIAIFGRNGAGKTNILEAVSLMSPGRGLRGASAEDM 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +     ++ +  + ++    E    R+V      D        L +  R++W
Sbjct: 64  ARRPESVGWKLTGVLQSLHQVHEVETWAEPGGSRNVTI----DGKTAAQVALGRISRVTW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP MDR++   +  RR+FLDRM  + +P H   ++ +E+ MR RNRLL +G+ D+ W  
Sbjct: 120 LVPVMDRLWMEGADGRRKFLDRMAMSFEPGHGEAVLTYEKAMRDRNRLLKDGHRDAHWYG 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++EAQMA+ G  I   R   +  +    M    +  FP  +L L   L  +  ++    +
Sbjct: 180 ALEAQMAKAGAAIQENRRRTVALIVGAQMS--AQTAFPAAELQL---LHAEGAETGPEGE 234

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            E A+   + R  D M+ RTL+GPHR+DL   Y +KA+     STGEQK +LV + LAH 
Sbjct: 235 AELAEAYAESRPRDLMAGRTLVGPHRADLAATYAEKAMPARECSTGEQKALLVSLILAHG 294

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  P+LLLDE+SAHLD D+R AL+  +  +G+Q F+TGT   +F  L   A  
Sbjct: 295 RALAQDFGAPPMLLLDEVSAHLDADRRAALYDEIVALGAQAFLTGTGPELFTELGARAMH 354

Query: 365 MRISN 369
           + + +
Sbjct: 355 IEVRD 359


>gi|258542324|ref|YP_003187757.1| recombination protein F [Acetobacter pasteurianus IFO 3283-01]
 gi|256633402|dbj|BAH99377.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636461|dbj|BAI02430.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639514|dbj|BAI05476.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642570|dbj|BAI08525.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645625|dbj|BAI11573.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648678|dbj|BAI14619.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651731|dbj|BAI17665.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654722|dbj|BAI20649.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 382

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 136/363 (37%), Positives = 194/363 (53%), Gaps = 8/363 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +S FRNY  L    DA   +  G+NG GKTN+LEA+S LSPGRG R A      R+G+
Sbjct: 17  LTLSNFRNYERLAWSPDASLLVLTGENGSGKTNLLEAVSLLSPGRGLRAAPLTQFGRMGA 76

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            + +   AR+E  +   ++    +   +R  R   +N   IR  +     L   W+ P M
Sbjct: 77  -TNWGVSARIETEDEFLELGTGTQGGQERPRRVFLLNGRQIRGQEAWEDTLATVWITPQM 135

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           DR+FS  +  RRRFLDR+V A+ P H R +  ++R M  RNRLL   + + SW S +EA 
Sbjct: 136 DRLFSEGASGRRRFLDRLVMAVTPHHARELAAYDRAMTQRNRLLQTRFSEHSWLSGLEAS 195

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           MA   V +  AR E +      I  Y Q     FP    +L   +  K + S     E++
Sbjct: 196 MARHAVAVAAARQETVRQ----ICHYAQNGLGAFPAAIATLECAVAQKLETSPALAVEDW 251

Query: 248 AK-KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
            + KL D R+ D+   R   G HRSD +++        A  STG+QK +L+G+ LAHARL
Sbjct: 252 LREKLADLREDDAARGRATFGTHRSDFLLEDLTSRQPAALASTGQQKSLLIGVVLAHARL 311

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +++  G  PILLLDE   HLD  +R +L  IV D  + + +TGTD++ F  L +TA+F  
Sbjct: 312 VTDYRGQPPILLLDEPLVHLDAARRASLLEIVQDFRTTVLLTGTDQAPFAPLKQTAQFET 371

Query: 367 ISN 369
           + N
Sbjct: 372 LKN 374


>gi|23428630|gb|AAM12398.1| recombinase F [Zymomonas mobilis subsp. mobilis CP4]
          Length = 376

 Score =  228 bits (580), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 138/372 (37%), Positives = 208/372 (55%), Gaps = 18/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L++ +FR++  +RL  +A   I  G+NGVGKTNILEAIS LSPGRGFR +   D+ R
Sbjct: 3   ISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDLVR 62

Query: 67  IGSPSFFSTFARVEGMEG---LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                 F+  A++  +E    +  ++I +      S R +++N V     + L++ L I 
Sbjct: 63  REGDGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTTSA-NALSEWLAIL 121

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
           WL P+MDR+F   +  RRRFLDR+   I P H R    +E  +R RN+LL+ E  +D  W
Sbjct: 122 WLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAIRQRNKLLSDEKGYDPLW 181

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGK----- 235
              +E  MAE    I +AR ++++ LS    E  ++E+  F    L+L   +D +     
Sbjct: 182 LDGLEQIMAEQATHILLARRQLVDLLSE---EIAKQEDGLFAKADLALEEGVDSRDLVTH 238

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
             +    L +   +K    R  D+   RTL G HR+DL V +  KA+  A  STGEQK +
Sbjct: 239 NSEEIMPLLQNIWQK---SRTSDAAIGRTLQGVHRTDLKVTHHAKAMPAAQSSTGEQKAL 295

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           L+G+ LA   LI+   G  P+LLLDE++AHLD  +R  LF I+   G Q++MTGT+ S+F
Sbjct: 296 LLGLVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLF 355

Query: 356 DSLNETAKFMRI 367
           ++  E A + ++
Sbjct: 356 ETAGEAACYFQL 367


>gi|126734080|ref|ZP_01749827.1| DNA replication and repair protein RecF, putative [Roseobacter sp.
           CCS2]
 gi|126716946|gb|EBA13810.1| DNA replication and repair protein RecF, putative [Roseobacter sp.
           CCS2]
          Length = 366

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 191/365 (52%), Gaps = 15/365 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    +  DA+     G NG GKTN+LEA S LSPGRG RRA   D+
Sbjct: 4   LALTELTLSHFRSHKRAAITLDARPLAIFGPNGAGKTNVLEAASLLSPGRGLRRAGADDL 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           TR      +   A ++ +    +I    E  + R +R     D        L +  RI W
Sbjct: 64  TRRPEALGWKITAILQSLHQTHEIETWAEAGNPRQLRI----DGKAAPQTALGRIARILW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVPSMDR++   +  RRRFLDR   + +P H   ++ +++ MR RNRLL +   D  W +
Sbjct: 120 LVPSMDRLWIEGAEGRRRFLDRATLSFEPTHAEAVLTYDKAMRERNRLLKDMVRDPHWYT 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +IE QMAE G  I   R   I  L++   +      FP   L+LT         S   + 
Sbjct: 180 AIEGQMAEAGAAIQKNRHRAIAELTT--AQEAATTAFPTAMLTLT---------SAEPIP 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +     L D R  D  + RTLIGPHR+DL   + DK +     STGEQK +L+ + LA+ 
Sbjct: 229 DNLQTALADNRNRDMAAGRTLIGPHRADLDAVFADKGVPAKDCSTGEQKALLISLILANG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  PILLLDE++AHLD  +R AL+  +  +G+Q FMTGT   +F  L   A++
Sbjct: 289 RALARDFGAPPILLLDEVAAHLDAARRAALYDEICSLGAQAFMTGTGAELFAELGRRAQY 348

Query: 365 MRISN 369
           + ++ 
Sbjct: 349 VEVTE 353


>gi|332188891|ref|ZP_08390596.1| DNA replication and repair RecF family protein [Sphingomonas sp.
           S17]
 gi|332011073|gb|EGI53173.1| DNA replication and repair RecF family protein [Sphingomonas sp.
           S17]
          Length = 347

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/350 (40%), Positives = 200/350 (57%), Gaps = 23/350 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +++FRN+A L L   A   +  G+NG GKTN+LEA+S L+PGRG RRA+ + + R G 
Sbjct: 5   LVLTDFRNHADLALNPGAGFVVLTGENGAGKTNVLEAVSLLAPGRGLRRAALSAMARQGG 64

Query: 70  PSFFSTFARVEGMEGLADISIK---LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              F   A + G     D+ I    L +  +R V  +Q         + L   L + WL 
Sbjct: 65  KGGFGVAATLNG-----DVEIATGALPSAPERRVVRVQGAGAS---ANALADWLSVLWLT 116

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P+MDR+F   + ERRRFLDR+V A+ P H      ++  MR RNRLL ++G  D  W S+
Sbjct: 117 PAMDRLFVEPASERRRFLDRLVLALAPAHGMHATRYDAAMRERNRLLASDGPVDPDWLSA 176

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +EA+M E G  ++ ARV  + AL    +E V    F    L+L G      D +      
Sbjct: 177 LEARMVEHGAALDAARVAAVAALDQR-LEEVPDSVFARASLALEGE---AVDPA------ 226

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            +A  L  GR+ D+ + RTL+GPHR+DL+V +  K    A  STGEQK +L+GI LAHA 
Sbjct: 227 AFAHALAMGRRRDAAAGRTLVGPHRADLLVTHVAKGQAAALCSTGEQKALLLGIVLAHAD 286

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           L++   G AP+LLLDE++AHLD  +R ALF  +   G Q++MTGT+ ++F
Sbjct: 287 LVTERRGAAPVLLLDEVAAHLDPSRRAALFERLAGRG-QVWMTGTEPALF 335


>gi|85705683|ref|ZP_01036780.1| recombination protein F [Roseovarius sp. 217]
 gi|85669673|gb|EAQ24537.1| recombination protein F [Roseovarius sp. 217]
          Length = 369

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 133/372 (35%), Positives = 209/372 (56%), Gaps = 25/372 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++ + RL  DA+     G NG GKTN++EA+S LSPGRG RRA+  D+
Sbjct: 4   LSLSELTLSHFRSHKAARLSLDARPVAIHGPNGAGKTNLIEAVSLLSPGRGLRRAAAQDM 63

Query: 65  TRIGSP------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            R          +   +  +V  +E  A+ S         + R L+I+      +  L +
Sbjct: 64  ARRPEALGWKITTILHSLHQVHEVETFAEGS---------AARQLRIDGKTATQI-ALGR 113

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
             R+ WLVP+MDR++   +  RRRFLDRM  +  P H    + +E+ MR RNRLL +   
Sbjct: 114 IARVLWLVPAMDRLWIEGAEGRRRFLDRMTMSFVPSHAEATLAYEKAMRERNRLLKDQVR 173

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFD 237
           D+ W  ++E Q+A+ G +I+  R    +AL+ +    +Q E  FP  +L LT   +G+  
Sbjct: 174 DAQWYLALERQLADAGAEIHANRQ---HALALIAGAQMQAETAFPTAELELTQ-TEGEMP 229

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           ++     E+  + L + R  D ++ RTLIGPHR+DL   Y  K +  A  STGEQK +LV
Sbjct: 230 ET----AEDLRQALAESRFRDLVAGRTLIGPHRADLYGVYAAKGVPAADCSTGEQKALLV 285

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA+AR ++   G  P+LLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  
Sbjct: 286 SLILANARALARDFGAPPLLLLDEVAAHLDATRRAALYDEICALGAQAWMTGTGPELFSE 345

Query: 358 LNETAKFMRISN 369
           L + A+ + +++
Sbjct: 346 LGDRAQHIHVTD 357


>gi|254437923|ref|ZP_05051417.1| hypothetical protein OA307_2793 [Octadecabacter antarcticus 307]
 gi|198253369|gb|EDY77683.1| hypothetical protein OA307_2793 [Octadecabacter antarcticus 307]
          Length = 369

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 131/370 (35%), Positives = 200/370 (54%), Gaps = 13/370 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +S FR++    L  D +     G NG GKTNILEA+S LSPGRG RRAS  D+TR
Sbjct: 6   LSHLTLSHFRSHKRATLDLDGRTVAIYGPNGAGKTNILEAVSILSPGRGLRRASSEDMTR 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 +   A +  +    +I    E    R  +     D        L +  R+ WL+
Sbjct: 66  RPEALGWKVTADLTSLNQRHEIESWSENGGSRQTKI----DGKAAAQTALGRIGRVLWLI 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P+MDR++   +  RRRFLDR   + +P H    + +E+ MR RNRLL +   D+ W S++
Sbjct: 122 PAMDRLWIEGAEGRRRFLDRATLSFEPGHADAALKYEKAMRERNRLLKDMVRDAHWYSAL 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E QMA+ G +I+  R+E ++ L++   +   +  FP   L+LT       D +  A  + 
Sbjct: 182 ERQMADAGAQIHRNRLETLDLLTN--AQQAAQTAFPTAWLTLT-----HSDPACDAPDDP 234

Query: 247 YA--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            A      + R  D  + RTLIGPHR+DL   +  K +     STGEQK +L+ + LA+A
Sbjct: 235 IALLAAFANNRPRDMAAGRTLIGPHRADLDAIFAAKDVPAKDCSTGEQKALLISLILANA 294

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R +++  G  PILLLDE++AHLD  +R AL+  ++ +G+Q FMTGT   +FD L   A++
Sbjct: 295 RALADDFGAPPILLLDEVAAHLDATRRAALYSEISALGAQAFMTGTGLELFDELGAAAQY 354

Query: 365 MRISNHQALC 374
           + +++   + 
Sbjct: 355 VHVTDENGVS 364


>gi|114798067|ref|YP_759290.1| DNA replication and repair protein RecF [Hyphomonas neptunium ATCC
           15444]
 gi|114738241|gb|ABI76366.1| DNA replication and repair protein RecF [Hyphomonas neptunium ATCC
           15444]
          Length = 370

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 135/370 (36%), Positives = 212/370 (57%), Gaps = 17/370 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++++FRNYA L L  DA+     G NG GKTN+LEA+S   PGRG R A  +++TR  +
Sbjct: 7   LSLTDFRNYAGLTLRLDARPVCLYGSNGAGKTNLLEAVSQFGPGRGLRSAQLSEMTRRDA 66

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P  ++  A ++  +    ISI L+T    + R ++I+       D L + +RI WL P+M
Sbjct: 67  PGGWALAATLDDEQ---KISITLDTAGT-AKRTVRIDGAPASPGD-LAERIRIVWLTPAM 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           D +F G + +RRRF DR+V A  P H +    +++ +  RN L+  G+ D +W  +IEA+
Sbjct: 122 DGVFRGGASDRRRFFDRLVMAHLPAHGKAAARYDKALAERNALIERGHVDPAWADAIEAR 181

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK------FDQSFCAL 243
           +AE G ++ I R  ++ AL  + ++   + +FP   L+L G  +        F   F  L
Sbjct: 182 LAEAGTEMAINRAIVLEAL-QIAIDARPEGHFPKADLTLEGAAEAAALKGEDFRTIFDLL 240

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            + Y      GR+ D  + RTL GPHR+DL V +   A      STG+QK +L+G+ LA 
Sbjct: 241 VDAY----HSGRRRDIGAGRTLSGPHRTDLAVIHRPTAAPAGEASTGQQKALLIGLVLAS 296

Query: 304 ARLIS-NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           A  +S   +G +P+LLLDE +AHLD D+R ALF  +T +G Q ++TGT+  +F++  + A
Sbjct: 297 ATALSAGGSGPSPLLLLDEAAAHLDPDRRAALFDELTVLGGQAWLTGTEAFLFEAFGDRA 356

Query: 363 KFMRISNHQA 372
           + +R+    A
Sbjct: 357 QRIRVDEGSA 366


>gi|85374625|ref|YP_458687.1| recombination protein F [Erythrobacter litoralis HTCC2594]
 gi|84787708|gb|ABC63890.1| recombinational DNA repair ATPase [Erythrobacter litoralis
           HTCC2594]
          Length = 361

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 134/362 (37%), Positives = 194/362 (53%), Gaps = 14/362 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           + +S  RN+A  RL   A+  + VG+NG GKTN+LEAIS L+PGRG RRA+  D+ R G 
Sbjct: 6   ITLSNLRNHAETRLQGTARFNLLVGENGAGKTNVLEAISLLAPGRGLRRAALPDIARAGG 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWLVPS 128
              F+  A +   +G   + +       R   R +++N      V  L + L I WL P+
Sbjct: 66  GGGFTVGASLTPGDGGEPVQLGTMVDPARPGRRRVRVNGAEASAVS-LGEWLAIGWLTPA 124

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWCSSIE 187
           MD IF G + +RRRF+DRM  A+DP H R    +E ++R RNRLL  E   D +W   IE
Sbjct: 125 MDGIFMGPAGDRRRFVDRMALALDPLHARHASRYENVLRERNRLLGDEREPDPTWLDGIE 184

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           AQMA+ G  +  +R  ++  L   +  +  +   P  +  L    +  F++      E  
Sbjct: 185 AQMAKHGSALAQSRARLVGVLVETLASHPDE---PFARPLLAILTESPFEE------EAL 235

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
              L   R  D  + RTLIGPHR DL V    K    A  STGEQK +L+ I LAH  L 
Sbjct: 236 RVALRANRGRDRRAGRTLIGPHRDDLTVTMAGKDTPAASCSTGEQKAMLIAITLAHGELA 295

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
           +   G   ++LLDE++AH+D  +R ALF  + + G+Q++MTGT+ + F ++   A   R+
Sbjct: 296 AR--GRPGVMLLDEVAAHIDPVRREALFERLRETGAQVWMTGTELAPFAAIEAEAAVWRV 353

Query: 368 SN 369
           S 
Sbjct: 354 SG 355


>gi|254486983|ref|ZP_05100188.1| DNA replication and repair protein RecF [Roseobacter sp. GAI101]
 gi|214043852|gb|EEB84490.1| DNA replication and repair protein RecF [Roseobacter sp. GAI101]
          Length = 365

 Score =  226 bits (576), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 139/364 (38%), Positives = 195/364 (53%), Gaps = 16/364 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +S FR++    +  D +     G NG GKTNILEA+S LSPGRG RR+S  D+TR
Sbjct: 6   ISHLTLSHFRSHKRAIVDSDTRPVAIHGPNGAGKTNILEAVSLLSPGRGLRRSSALDMTR 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 +   A +  +    +I I  E    R VR     D        L +  R+ WL+
Sbjct: 66  RPEALGWKVTALLHSLGSAHEIEIWSEAGAARQVRI----DGKATPQTALGRIARVLWLI 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           PSMDR++   +  RRRFLDRM  +  P H  + + +E+ MR RNRLL +   + SW  ++
Sbjct: 122 PSMDRLWIEGAEGRRRFLDRMTLSFLPDHAEQSLAYEKAMRERNRLLKDMVREPSWYLAL 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCALKE 245
           E Q+AE G  I+  R    +AL ++     Q E  FP   LSL        D    A  +
Sbjct: 182 EQQLAEAGAAIHANRQ---SALQAITEAQSQAETAFPTATLSLI------CDMPTTA--Q 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           +    L D R  D  + RTLIGPHR+DL   Y  K +     STGEQK +LV + LA+AR
Sbjct: 231 DLRAALADNRMRDLAAGRTLIGPHRADLEGVYAAKDVPARDCSTGEQKALLVSLILANAR 290

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
            ++   G  P+LLLDE++AHLD  +R AL+  +T +G+Q +MTGT   +FDSL   A+ +
Sbjct: 291 ALAADFGAPPLLLLDEVAAHLDASRRAALYDEITALGAQAWMTGTGAELFDSLGPRAQML 350

Query: 366 RISN 369
            ++ 
Sbjct: 351 EVTE 354


>gi|83941667|ref|ZP_00954129.1| recombination protein F [Sulfitobacter sp. EE-36]
 gi|83847487|gb|EAP85362.1| recombination protein F [Sulfitobacter sp. EE-36]
          Length = 365

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 137/361 (37%), Positives = 198/361 (54%), Gaps = 16/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +S FR++    +  D +     G NG GKTNILEA+S LSPGRG RR+S +D+TR   
Sbjct: 9   LTLSHFRSHKRAVIDCDTRPVSIFGPNGAGKTNILEAVSLLSPGRGLRRSSASDMTRRPE 68

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              +   A +  +  + ++ I  E    R VR     D        L +  R+ WL+PSM
Sbjct: 69  ALGWKITAHLRSLGQIHEVEIWSEAGAARQVRI----DGKATAQTGLGRIARVLWLIPSM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           DR++   +  RRRFLDRM  +  P H  + + +E+ MR RNRLL +   + SW  ++E Q
Sbjct: 125 DRLWIEGAEGRRRFLDRMTLSFLPDHADQSLAYEKAMRERNRLLKDMVREPSWYVALEQQ 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           MAE G  I+  RV  + A++       Q E  FP      T  LD   D    A  E   
Sbjct: 185 MAEAGSAIHANRVAALQAITE---AQAQAETAFP------TATLDLICDMPTTA--EGLR 233

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           + L D R  D  + RTLIGPHR+DL   Y  K +     STGEQK +LV + LA+AR ++
Sbjct: 234 QALADNRMRDLSAGRTLIGPHRADLEGVYAAKDVPARDCSTGEQKALLVSLILANARALA 293

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
              G  P+LLLDE++AHLD ++R AL+  ++ +G+Q +MTGT + +FD+L   A+ + ++
Sbjct: 294 ADFGAPPLLLLDEVAAHLDANRRAALYDELSALGAQAWMTGTGEELFDTLGPRAQRLEVT 353

Query: 369 N 369
            
Sbjct: 354 E 354


>gi|89052494|ref|YP_507945.1| recombination protein F [Jannaschia sp. CCS1]
 gi|88862043|gb|ABD52920.1| DNA replication and repair protein RecF [Jannaschia sp. CCS1]
          Length = 375

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/367 (34%), Positives = 199/367 (54%), Gaps = 13/367 (3%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++ +  L +S FR++   R+  D +     G NG GKTN++EA+S LSPGRG RRA+  
Sbjct: 12  SKVFVSSLALSHFRSHRRARMELDGRPVALFGPNGAGKTNLMEAVSLLSPGRGLRRAAAE 71

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++ R      +   A + G     DI++  E    R+    Q++      +  L + LRI
Sbjct: 72  EIIRRPEAIGWKVSAEISGPSINHDITLTAEPGQPRTT---QVDGKTAPQI-ALARLLRI 127

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WLVPS DR++S  +  RRRFLDR+  +  P H   ++ +E+ MR RNRLL +   D +W
Sbjct: 128 VWLVPSQDRLWSEGAEGRRRFLDRITLSFLPDHADAVLTYEKAMRERNRLLRDDARDPAW 187

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             ++EAQMA+  V+I   R + +  +S+   +      FP   L +         +  C 
Sbjct: 188 YRALEAQMADAAVRIVNGRDDALTRISA--AQNGAATAFPAADLGIE-------TEHPCQ 238

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             +++ +     R  D  + RTLIGPHR+D+   Y DK +     STGEQK +L+ + L+
Sbjct: 239 TVDDFIQAFEGSRPRDLAAGRTLIGPHRADMSAIYRDKGVPAKQCSTGEQKALLISLILS 298

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +AR +   TG AP++LLDE++AHLD  +R ALF  +  + +Q +MTGT   +F  L + A
Sbjct: 299 NARALKAETGTAPLVLLDEVAAHLDAGRRAALFDEICALEAQAWMTGTGPELFAELGDRA 358

Query: 363 KFMRISN 369
           +   I+ 
Sbjct: 359 QHFEITE 365


>gi|114762140|ref|ZP_01441608.1| recombination protein F [Pelagibaca bermudensis HTCC2601]
 gi|114545164|gb|EAU48167.1| recombination protein F [Roseovarius sp. HTCC2601]
          Length = 369

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 127/371 (34%), Positives = 197/371 (53%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    +  DA+     G NG GKTN++EA+S LSPGRG RRAS  ++
Sbjct: 4   LHLSSLTLSHFRSHKRAAVEVDARPVAIFGPNGAGKTNLIEAVSLLSPGRGMRRASAQEM 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           TR      +   A + G EG ++IS++ E+   R V      D        L +  R+ W
Sbjct: 64  TRRPEALGWKIGAVLHGPEGASEISVRSESGGSRQVEI----DGKPAPQTALGRIARVLW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+PSMDR++      RRRFLDRM  +  P H    + +E+ MR RNRLL E   D+ W +
Sbjct: 120 LIPSMDRLWIEAPEGRRRFLDRMTLSFFPDHADASLTYEKAMRERNRLLKEQIRDAHWYA 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E QMA+ G  I   +            +   + +FP   L+L        +      +
Sbjct: 180 ALETQMAQSGALIQ--QNRQAALARLARAQDGAETSFPAADLALV-----STEADIPETE 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+      +GR  D  + RTL+GPHRSDL   +  K +  +  STGEQK +L+ + LA+A
Sbjct: 233 EDLRAVFAEGRFRDMAAGRTLVGPHRSDLYGVFAAKGVPASDCSTGEQKALLISLILANA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  P+LLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L + A+ 
Sbjct: 293 RALAAEIGAPPLLLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFAELGDRAQR 352

Query: 365 MRISNHQALCI 375
           ++++      +
Sbjct: 353 LQVTEEAGQSV 363


>gi|149912810|ref|ZP_01901344.1| recombination protein F [Roseobacter sp. AzwK-3b]
 gi|149813216|gb|EDM73042.1| recombination protein F [Roseobacter sp. AzwK-3b]
          Length = 370

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 133/366 (36%), Positives = 191/366 (52%), Gaps = 13/366 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +S FR++   RL  DA+     G NG GKTNILEA+S  SPGRG RRA+  D+
Sbjct: 4   LHISRLTLSHFRSHKGARLDVDARPVAIYGPNGAGKTNILEAVSLFSPGRGLRRAAAQDM 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +     +  +  L ++ +  E    R  R     D        L +  R+ W
Sbjct: 64  ARRPEALGWKVTGILHSLHQLHEVELWSEEGAARQTRI----DGKPAAQTALGRIARVLW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVPSMDR++   +  RRRFLDRM  +  P H    + +E+ MR RNRLL +   D+ W  
Sbjct: 120 LVPSMDRLWIEGTEGRRRFLDRMTLSFRPDHADISLTYEKAMRERNRLLKDQVRDAHWYV 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCAL 243
           ++E Q+AE G  I+  R   + AL  L     Q E  FP   L L        +      
Sbjct: 180 ALERQLAETGAAIHANR---LYALDQLREAQAQAETAFPAADLDLI-----STEADMPDT 231

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             + A+ L + R  D  + RTLIGPHR+DL   Y  K +     STGEQK +LV + LA+
Sbjct: 232 PADLAEALAESRFRDLAAGRTLIGPHRADLYGVYAAKGVPARDCSTGEQKALLVSLILAN 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           AR ++   G  P+LLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L + A+
Sbjct: 292 ARALARDFGAPPLLLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFSDLGDRAQ 351

Query: 364 FMRISN 369
           ++ ++ 
Sbjct: 352 YIEVTE 357


>gi|119385560|ref|YP_916615.1| recombination protein F [Paracoccus denitrificans PD1222]
 gi|119376155|gb|ABL70919.1| DNA replication and repair protein RecF [Paracoccus denitrificans
           PD1222]
          Length = 358

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 128/370 (34%), Positives = 200/370 (54%), Gaps = 31/370 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR++A L +  D +     G NG GKTNILEA+S LSPGRG R A+  D 
Sbjct: 1   MTLSLLHLTQFRSWARLEIEADHRPVAIHGPNGAGKTNILEAVSMLSPGRGMRGAAPGDQ 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE-------LN 117
            R G    +   A +    G   +  +      R V           V+DE       L 
Sbjct: 61  ARKGPEVGWQIRAEI----GTHQVLTRALPGQPREV-----------VIDEKPSTQIALG 105

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           + +R+ WL P+MDR+++    +RRRFLDR+  +  P H    + +E+ MR RNRLL +  
Sbjct: 106 RLMRVIWLTPAMDRLWTDAPEQRRRFLDRVTLSFTPGHAEDALGYEKAMRERNRLLRDEV 165

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            D+ W  ++EAQMAE G  +   R++ I  +  +  +      FP   L+L    +G  D
Sbjct: 166 RDAGWYRALEAQMAETGAALTRNRLDAIARI--MAAQEGAGTAFPSASLTLLPG-EGSAD 222

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                  E  A +L +GR  D  + RTL GPHR+DL   +  +A+  A  STGEQK +L+
Sbjct: 223 DPDA---ESIAARLAEGRGRDMAAGRTLTGPHRADLGAHWGPQAMPAALSSTGEQKALLL 279

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA+AR ++  +   P+LLLDE++AHLD D+R AL+  +  + +Q ++TGT   +F++
Sbjct: 280 SLILANARALAEES---PVLLLDEVAAHLDADRRAALYDEICALRAQAWLTGTGPELFEA 336

Query: 358 LNETAKFMRI 367
           L   A+F+ +
Sbjct: 337 LRGRAQFLAV 346


>gi|94495802|ref|ZP_01302381.1| DNA replication and repair protein RecF [Sphingomonas sp. SKA58]
 gi|94424494|gb|EAT09516.1| DNA replication and repair protein RecF [Sphingomonas sp. SKA58]
          Length = 357

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/365 (35%), Positives = 200/365 (54%), Gaps = 16/365 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +S+FRN+A   ++ D    +  GDNG GKTNILEA+S L+PGRG R A+   + R
Sbjct: 2   IGRLTLSDFRNHADALILPDHAFVLLTGDNGAGKTNILEAVSMLAPGRGLRGAALGAMAR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 F   A V+G+  +    +     + R VR   +        + L  HL I+WL 
Sbjct: 62  QEGAGGFGIAAEVDGV--VLGTGVAASAPERRQVRIGGVGSSA----NALADHLAITWLT 115

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185
           P+MDR+F      RRRFLDR+  A+ P H      ++  MR RNRLL +    D +W S+
Sbjct: 116 PAMDRLFLDSPGGRRRFLDRLTLALHPGHAAHSARYDAAMRARNRLLGDLRTADPAWLSA 175

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +EAQM + G+ ++ AR +++  L+ ++    ++ + P  +  +        +++    +E
Sbjct: 176 LEAQMDDHGLVLSAARADLVARLNDIL---ARQPDAPFARPMIA------IEEAEPQGEE 226

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             A +L   R+ D+ + R+L GPHR DL V +  K    A  STGEQK +L+ I LAHA 
Sbjct: 227 PLAMRLARQRRRDAAAGRSLSGPHRHDLAVTHVAKGQAAALCSTGEQKALLLSILLAHAA 286

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+++  G  P+LLLDE++AHLD  +R ALF  + + G QI+MTGT+ S+F  L    +  
Sbjct: 287 LVADERGQPPVLLLDEVAAHLDPLRRAALFDRLAETGGQIWMTGTEPSLFSDLTAATRLT 346

Query: 366 RISNH 370
             + H
Sbjct: 347 VTAGH 351


>gi|329113487|ref|ZP_08242268.1| DNA replication and repair protein RecF [Acetobacter pomorum DM001]
 gi|326697312|gb|EGE48972.1| DNA replication and repair protein RecF [Acetobacter pomorum DM001]
          Length = 382

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 134/363 (36%), Positives = 192/363 (52%), Gaps = 8/363 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +S FRNY  L    +A   +  G+NG GKTN+LEA+S LSPGRG R A      R+G+
Sbjct: 17  LTLSNFRNYERLVWSPNASLLVLTGENGSGKTNLLEAVSLLSPGRGLRAAPLTQFGRMGA 76

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            ++    AR+E  +   ++    +   +R  R   +N   IR  +     L   W+ P M
Sbjct: 77  INW-GVSARIETKDEFLELGTGTQGGQERPRRVFLLNGRQIRGQEAWEDTLATVWITPQM 135

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           DR+FS  +  RRRFLDR+V A+ P H R +  ++R M  RNRLL   + + SW S +EA 
Sbjct: 136 DRLFSEGASGRRRFLDRLVMAVTPHHARELAAYDRAMTQRNRLLQTRFSEHSWLSGLEAS 195

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           MA   V +  AR E +      I  Y Q     FP    +L   +  K + S     E++
Sbjct: 196 MARHAVAVAAARQETVRQ----ICHYAQNGLGAFPAAIATLQCAIAQKLETSPALTVEDW 251

Query: 248 -AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
              KL + R+ D+   R   G HRSD +++        A  STG+QK +L+GI LAHARL
Sbjct: 252 LCAKLAELREDDAARGRATFGTHRSDFLLEDLSSRQPAALASTGQQKSLLIGIVLAHARL 311

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +++  G  PILLLDE   HLD  +R +L  IV D  + + +TGTD++ F  L  +A+F  
Sbjct: 312 VTDYRGQPPILLLDEPLVHLDAARRASLLEIVQDFRTTVLLTGTDQAPFAPLKHSAQFET 371

Query: 367 ISN 369
           + N
Sbjct: 372 LKN 374


>gi|87199175|ref|YP_496432.1| recombination protein F [Novosphingobium aromaticivorans DSM 12444]
 gi|87134856|gb|ABD25598.1| DNA replication and repair protein RecF [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 357

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/353 (40%), Positives = 191/353 (54%), Gaps = 18/353 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN+A+ RL       + VG+NG GKTN+LEAIS L+PGRG RRA  A++
Sbjct: 1   MSLTRLTLRDFRNHAATRLEGMRAFNVLVGENGAGKTNVLEAISLLAPGRGLRRAQPAEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+  A +E  +G   I     + D    R ++IN V       L + L I+W
Sbjct: 61  AGREGPGGFAIAAEME--DGAVQIGTAT-SPDAPGRRSVRINGVEGPAA-RLAEWLSITW 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
           L P+MDRIF+  +  RRRFLDR+V A DP H R    +E  +R RNRLL E    D  W 
Sbjct: 117 LTPAMDRIFAESAGSRRRFLDRLVLARDPGHARNATRYETALRERNRLLGEVAEPDPLWL 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             IEAQMAE G  +  AR E++  LS  ++E V  + F    L     +    D     L
Sbjct: 177 DGIEAQMAETGAAMAAARTELVADLSR-VLETVPDQPFARPSLRYASEVPPDADGLRAML 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E   +           + R+LIGPHR DL V    K    A  STGEQK +L+ I LAH
Sbjct: 236 REGRRRD--------RAAGRSLIGPHRDDLAVLLAAKNAPAADCSTGEQKAMLIAIVLAH 287

Query: 304 ARLISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           A L   T G  P +LLLDEI+AHLD  +R ALF  +   G+Q++MTGT+ + F
Sbjct: 288 AGL---TAGERPRLLLLDEIAAHLDPVRRGALFERLATSGAQVWMTGTEMAPF 337


>gi|154243961|ref|YP_001414919.1| recombination protein F [Xanthobacter autotrophicus Py2]
 gi|154158046|gb|ABS65262.1| DNA replication and repair protein RecF [Xanthobacter autotrophicus
           Py2]
          Length = 378

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 137/366 (37%), Positives = 208/366 (56%), Gaps = 11/366 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L ++ FR+Y S ++  +    +  G NG GKTNILEA+SFLSPGRG RRA   ++  
Sbjct: 6   IRKLTLTAFRSYPSAQVSVEDGPVVLTGPNGAGKTNILEALSFLSPGRGLRRAQLGEIGH 65

Query: 67  -----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                 G P + +  A VEG  G   +    +   +  VR  +I+       +    HL+
Sbjct: 66  RAPGAAGEPPW-AVSALVEGALGEVRLGTGYDPVQEGGVRRCRIDGEPAPSANAFLDHLK 124

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           + WL P MD +F G   +RRR+LDR+V A+D  H  R+   ER +R RNRLL E    + 
Sbjct: 125 VLWLTPEMDGLFLGPPGDRRRYLDRLVLAVDGAHGTRVNGLERALRSRNRLLEE-NGSAR 183

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSF 240
           +  ++E ++AEL V +  AR+E +  L + I  +    + FP  +L+L G ++ +     
Sbjct: 184 FLDAVEHEVAELAVAVAAARLETVARLGAEIAAHRDDASLFPFAELALDGAVE-RLIAVH 242

Query: 241 CALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            AL+ E  Y   L D R  D  + RTL GPH +DL V + +K +  A  STGEQK +L+G
Sbjct: 243 PALEVEDRYRALLRDNRPRDRAAGRTLEGPHLTDLSVSHGEKQLPAARCSTGEQKSLLIG 302

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + L+HARL+++  GF+PILLLD++ A+LD  +R  LF  +  +G+Q +MTG D + F +L
Sbjct: 303 LTLSHARLVASMQGFSPILLLDDVVAYLDAARRTGLFEALARLGAQAWMTGADPTAFSAL 362

Query: 359 NETAKF 364
           +   +F
Sbjct: 363 DGAERF 368


>gi|326388134|ref|ZP_08209737.1| recombination protein F [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207300|gb|EGD58114.1| recombination protein F [Novosphingobium nitrogenifigens DSM 19370]
          Length = 395

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 143/375 (38%), Positives = 202/375 (53%), Gaps = 36/375 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FRN+A+ RL   A   + VG+NG GKTN+LEAIS  SPGRG RRA  AD+
Sbjct: 37  MALTRLSLRDFRNHAATRLDGMATFNVLVGENGAGKTNVLEAISLFSPGRGMRRAHPADM 96

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNKHLR 121
                   F+  A +E      D +++L T    +    R ++IN         L + L 
Sbjct: 97  ASNKGAGDFAVAAELE------DGAVQLNTATTPATPGRRTVRINGAETPAT-RLAEWLA 149

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDS 180
           ++WL P+MDR+F+  +  RRRFLDR+V A +P H R    +E  +R RNRLL E    D 
Sbjct: 150 MTWLTPAMDRLFAEGATARRRFLDRLVLAGEPGHARIATRYEGALRERNRLLGEADEPDP 209

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            W  ++E QMAE G ++  +R  ++  L++                +L    DG F +  
Sbjct: 210 VWLDALETQMAETGAQLAASRRALVERLNT----------------ALAAQDDGPFARPI 253

Query: 241 CALKEE-------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            A   E       +A  L +GR+ D  + RTL GPHR DL V    K    AH STGEQK
Sbjct: 254 LAYNGETPVDASAFAAALRNGRRRDRAAGRTLTGPHRDDLDVVMAAKNAPAAHCSTGEQK 313

Query: 294 VVLVGIFLAHARLISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            +L+ I LAHA L  +  G  P +LLLDEI+AHLD  +R+AL+  +   G+Q++MTGT+ 
Sbjct: 314 ALLISIVLAHAAL-PDAGGERPRLLLLDEIAAHLDPLRRSALYERLAASGAQVWMTGTEP 372

Query: 353 SVFDSLNETAKFMRI 367
           S F  L   A F R+
Sbjct: 373 SPFADLPAPAAFWRV 387


>gi|126724508|ref|ZP_01740351.1| recombination protein F [Rhodobacterales bacterium HTCC2150]
 gi|126705672|gb|EBA04762.1| recombination protein F [Rhodobacterales bacterium HTCC2150]
          Length = 371

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/365 (35%), Positives = 206/365 (56%), Gaps = 15/365 (4%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +S FR++  L    D +     G NG GKTNILEA+S LSPGRG RRA+  D++R     
Sbjct: 13  LSHFRSHKLLNQPLDGRPVAIFGPNGAGKTNILEAVSLLSPGRGLRRATADDLSRKPEAL 72

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
            +   A +       +I+++ E     + R + I++     V  L +  +I WLVP+MDR
Sbjct: 73  GWKVSATLNSPHRTHEIAMRAEAG---ASRVVTIDEKTAPQV-ALGRIAQILWLVPAMDR 128

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
           ++   + ERRRFLDR+  +  P H   ++ +++ MR RNRLL +   D+ W  ++E QMA
Sbjct: 129 LWIEGAGERRRFLDRITLSFQPNHAEAVLSYDKAMRERNRLLKDHVRDAHWYLALEGQMA 188

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF--CALKEEYAK 249
           + G +I+  R++ ++ L+    +   K  FP   L+L   ++G+ +  F   +L+E    
Sbjct: 189 KSGAEIHRNRIDALSLLAK--AQSNAKTAFPAADLTL---IEGEENIGFDEASLRE---- 239

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L + R  D  + RTL+GPHRSD+   +  K I     STGEQK +L+ + L++AR ++ 
Sbjct: 240 VLANNRPNDLRAGRTLVGPHRSDVAALFAAKGIDARQCSTGEQKALLISLILSNARALAT 299

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
                PI+LLDE++AHLD+++R AL+  +T IG+Q FMTGT   +F  +   A+ + +S 
Sbjct: 300 LNDAPPIILLDEVAAHLDDNRRAALYDEITAIGAQAFMTGTGVELFAEMKGRAQALYVSE 359

Query: 370 HQALC 374
              L 
Sbjct: 360 SGGLS 364


>gi|159045915|ref|YP_001534709.1| recombination protein F [Dinoroseobacter shibae DFL 12]
 gi|157913675|gb|ABV95108.1| DNA replication and repair protein RecF [Dinoroseobacter shibae DFL
           12]
          Length = 361

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/367 (35%), Positives = 199/367 (54%), Gaps = 16/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++S FR++  L L  D +  +  G NG+GKTN+LEA+SFLSPGRG RRA    V
Sbjct: 4   VAVTSLSLSHFRSHTHLTLSLDERPVVLHGPNGIGKTNVLEALSFLSPGRGLRRAKTEAV 63

Query: 65  --TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLR 121
             +  G     S   +  G E       ++ TR D    R +Q++   +  +  L + + 
Sbjct: 64  GQSEAGLGWRVSALVKSGGRE------REVMTRSDAGASRTVQLDGKPVPQM-ALAELVP 116

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           + WLVP+MDR++   +  RR+FLDRM       H R ++ +ER MR RNRLL +G  D  
Sbjct: 117 MVWLVPAMDRLWIEAAEGRRKFLDRMTLNFVTTHGRDVLAYERAMRDRNRLLKDGVRDPH 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           W  ++EAQMAE G +I   R   ++ + +   +      FP   L +    DG+   +  
Sbjct: 177 WYHALEAQMAEAGARITQNRQRCLSEIEAAQADATTA--FPFAGLQIEAH-DGR---APL 230

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
             K E    L   R MD  + RTL GPHR DL   Y  K       STGEQK +L+ + L
Sbjct: 231 RTKGEIENTLRCNRYMDQTAGRTLDGPHRDDLAAVYVSKGTPARDCSTGEQKALLISLIL 290

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           + +R + +  G AP++LLDE++AHLD++++ AL+  +  +G+Q +MTGT   +F  L E 
Sbjct: 291 SMSRAVKSLVGQAPLVLLDEVAAHLDQERQRALYDEICALGAQAWMTGTGAELFQPLGER 350

Query: 362 AKFMRIS 368
           A+F+ + 
Sbjct: 351 AQFIALP 357


>gi|84501258|ref|ZP_00999463.1| recombination protein F [Oceanicola batsensis HTCC2597]
 gi|84390549|gb|EAQ03037.1| recombination protein F [Oceanicola batsensis HTCC2597]
          Length = 367

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 192/367 (52%), Gaps = 11/367 (2%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
            R+ +  L +S FR+Y    L  D +     G NG GKT++LEA+S  SPGRG RRA+  
Sbjct: 2   GRLCLTRLTLSHFRSYRHAALAPDGRPVAIHGANGAGKTSLLEAVSMFSPGRGLRRAAAE 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D+ R      +     +  +  + ++    E    RSVR     D        L +  R+
Sbjct: 62  DLIRRPEALGWKLTGVLTSLRQVHELESTAEPGAARSVRI----DGKAAAQAALGRVARV 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WLVPSMDR++   +  RRRFLDRM  +  P H    + +E+ MR RNRLL +   D  W
Sbjct: 118 LWLVPSMDRLWIEGAEGRRRFLDRMTLSFLPGHAEAALAYEKAMRERNRLLKDMVRDEHW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             ++EAQMAE G +I   R   ++ ++            P + LS     +G+      A
Sbjct: 178 YVALEAQMAEAGARITANRTRALSLIAGATAGAATAFPAPELSLS---HAEGELPDDAAA 234

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L+      L +GR+ D  + RTLIGPHR DL   +  K I     STGEQK +L+ + LA
Sbjct: 235 LR----LALAEGRRRDLQAGRTLIGPHRVDLGARWAAKGIAARDASTGEQKALLISLILA 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +AR ++   G  PILLLDE++AHLD  +R AL+  V  +G+Q +MTGT   +F  L + A
Sbjct: 291 NARALAGDFGAPPILLLDEVAAHLDAARRAALYDEVCALGAQAWMTGTGPELFADLGDRA 350

Query: 363 KFMRISN 369
           + MR++ 
Sbjct: 351 QVMRVTE 357


>gi|296282365|ref|ZP_06860363.1| recombination protein F [Citromicrobium bathyomarinum JL354]
          Length = 361

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 194/367 (52%), Gaps = 24/367 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++I +FRN+    L   A+  + VG NG GKTN+LEA+S L+PGRG RRA   ++ RI  
Sbjct: 6   ISILDFRNHRQTALEDTARFNLLVGANGAGKTNVLEALSLLAPGRGLRRAKLPEMARIDG 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE------LNKHLRIS 123
           P  F+  AR++  +G   + +         V   Q N   +RV         L++ L + 
Sbjct: 66  PGGFTVAARLQPADGAEPVQLGT------VVDAAQPNRRRVRVNGAERSALGLSEWLSVR 119

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
           WL P+MD +F+  +  RRR+LDR+  A  P H      +E  +R RNRLL+ +   D  W
Sbjct: 120 WLTPAMDGLFTDSAGARRRYLDRLALATAPGHAALSNRYETALRNRNRLLSDDAPPDPQW 179

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             ++EAQ+AE G  I   R  ++  L+   +E      FP   L+    ++    +   A
Sbjct: 180 LDALEAQLAEHGAAIAANRRALVEELNR-ELEAQADALFPRPLLA----IEPTGPEEHTA 234

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L    A  L   R+ +  + RTLIGPHR++L V   DK +  A  STGEQK +L+ I LA
Sbjct: 235 L----ADALRGNRRTERRAGRTLIGPHRAELAVTLADKGVPAARASTGEQKAMLIAITLA 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           H  L   T G A +LLLDE++AHLD  +R ALF  +   G Q++MTGT++  FD +   A
Sbjct: 291 HGALA--TRGRAGLLLLDEVAAHLDPQRREALFARLAANGEQVWMTGTERMPFDPILPDA 348

Query: 363 KFMRISN 369
               +S 
Sbjct: 349 AVWDVSG 355


>gi|83950588|ref|ZP_00959321.1| recombination protein F [Roseovarius nubinhibens ISM]
 gi|83838487|gb|EAP77783.1| recombination protein F [Roseovarius nubinhibens ISM]
          Length = 369

 Score =  219 bits (557), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 130/358 (36%), Positives = 188/358 (52%), Gaps = 11/358 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +S FR++    L  D +     GDNG GKTN++EA+S +SPGRG RRA+  D+ R   
Sbjct: 9   LKLSHFRSHLGSALQLDPRPVAIHGDNGSGKTNLIEAVSLISPGRGLRRAAAQDMGRQPE 68

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              +     +  +  + ++ I  E    R  R     D        L +  R+ WL+PSM
Sbjct: 69  ALGWKLRGVLHSLHQVHELEIWSEGGAARQTRI----DGKPAAQVALARIARVLWLIPSM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           DR++   +  RRRFLDRMV +  P H    + +E+ MR RNRLL +   D  W  ++E Q
Sbjct: 125 DRLWIEGAEGRRRFLDRMVMSFVPDHADVTLAYEKAMRERNRLLKDQVRDGHWYVALERQ 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MAE G+ I   R  +I+ L+    +      FP   L+L    +G         + EY  
Sbjct: 185 MAEAGLAIQANRQRVIDRLAQ--AQEGAATAFPAADLTLE-MAEGALPDG----EAEYRD 237

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L +GR+ D  + RTL+GPHR+DL   Y  K +     STGEQK +LV + LA+ R +  
Sbjct: 238 ALSEGRRRDLAAGRTLLGPHRADLQGVYAAKGVAAKDCSTGEQKALLVSLILANGRALRE 297

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
             G  PILLLDE++AHLD  +R AL+  +  +GSQ +MTGT   +F  L   A+ + +
Sbjct: 298 DFGAPPILLLDEVAAHLDAGRRAALYDEICALGSQAWMTGTGPELFAELGARAQHVEV 355


>gi|294085123|ref|YP_003551883.1| RecF protein [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664698|gb|ADE39799.1| RecF protein [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 418

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 135/368 (36%), Positives = 203/368 (55%), Gaps = 8/368 (2%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++ +  L ++ FRNY ++RL F     + VG NG GKTN+LEAIS LSPG+G RRA  A 
Sbjct: 35  QLWLSGLLLNNFRNYETVRLEFGQAPVVLVGANGAGKTNLLEAISLLSPGKGMRRAKTAH 94

Query: 64  VTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           + RIG+    +S  A +E  +G+  I   +        R ++   + +   D +   L +
Sbjct: 95  LARIGAAMPDWSVSAALETEDGVMQIGTGVPADSQTGRRIMRREGMTVSQAD-IATQLSV 153

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           SWL P MD +F      RRRFLDR+V A D  H  R   +E+LMR R  L++EG  D+ W
Sbjct: 154 SWLTPQMDGVFIDSPGARRRFLDRLVIAFDAAHIGRTNRYEKLMRERTLLISEGRGDAGW 213

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            +++EA +AE  + I  AR  +I+ L+           FP ++L L G ++   D+    
Sbjct: 214 FNALEASLAETAIAITAARRALIHDLNEEARHGWH--GFPGVRLELQGDIENWLDEMPAL 271

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301
             E+         + D  S   L GPH S+ +  Y     T A+  STG+QK +L+ + L
Sbjct: 272 AVEDRHMAAAANLRTDGTS--ALPGPHASE-VNAYDVAGDTPAYLASTGQQKALLIAVVL 328

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHARL     G  PI+LLD+++AHLD  +R+ALF  + D+G Q + +G+D S+FD L + 
Sbjct: 329 AHARLQERRLGRPPIMLLDDVAAHLDAKRRSALFEALFDLGGQSWFSGSDASLFDGLGKA 388

Query: 362 AKFMRISN 369
           A+FM+I +
Sbjct: 389 AQFMKIHD 396


>gi|103487192|ref|YP_616753.1| recombination protein F [Sphingopyxis alaskensis RB2256]
 gi|98977269|gb|ABF53420.1| DNA replication and repair protein RecF [Sphingopyxis alaskensis
           RB2256]
          Length = 369

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/362 (37%), Positives = 200/362 (55%), Gaps = 10/362 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++++FRN+A   L          GDNG GKTNILEAIS L+PGRG RRA  +D+ R G+
Sbjct: 6   LSLTDFRNHAGADLAAAPGLVALHGDNGAGKTNILEAISLLAPGRGLRRAPLSDMVRDGA 65

Query: 70  PSFFSTFARVEGMEGLADISIK--LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F+ FA V   EGL  +++   +E    R  R ++IN         L + L I WL P
Sbjct: 66  HGGFAVFAEVAAAEGLPPVALGTGIEPAQPRR-RIVRINGAPA-AATALGEWLAILWLTP 123

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSI 186
           +MDR+F   +  RRRFLDR+V A+DPRH +    +E  +R R +LL +    D +W +S+
Sbjct: 124 AMDRLFVETAGNRRRFLDRLVLALDPRHAQHGNRYEAALRARGKLLADLAAADETWLTSL 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           EAQ+AE G  ++ AR++ + ALS+   E   + + P  +  LT  +D +  +       E
Sbjct: 184 EAQLAEHGAAMDAARLDTLAALSA---ELAGQPDAPFARPLLT-LVDSEGAERSAPHSAE 239

Query: 247 YAKKLFDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             K LF  R+    +      GPHR DL+  +       A  STGEQK +L+ + LAH  
Sbjct: 240 ALKALFAARRRIDAAAGRATAGPHRDDLVAVHAVTGRAAARCSTGEQKAMLLSLVLAHGD 299

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
            ++   G  P+LLLDE++AHLD  +R AL+  +   G Q ++TGT+ ++FD++       
Sbjct: 300 CVARRRGQRPVLLLDEVAAHLDPLRRAALYERLAGQGGQAWLTGTEAALFDAMPGPVTRY 359

Query: 366 RI 367
           RI
Sbjct: 360 RI 361


>gi|254462172|ref|ZP_05075588.1| DNA replication and repair protein RecF [Rhodobacterales bacterium
           HTCC2083]
 gi|206678761|gb|EDZ43248.1| DNA replication and repair protein RecF [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 368

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/371 (35%), Positives = 199/371 (53%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +S FR++   R+          G NG GKTNILEA+S  SPGRG RRAS  D+
Sbjct: 2   LAITELTLSHFRSHKLARISCGPLPVAIYGPNGAGKTNILEAVSLFSPGRGMRRASAEDM 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           TR   P       +V G+    D + ++E   ++ S R  + N   +   + L +  R+ 
Sbjct: 62  TR--RPEALGW--KVTGLLQTQDQTHEIEMWSENGSARSTKANSKPV-PQNRLAELSRVL 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL+P+MDR++   +  RRRFLDRM  +  P H    + +E+ MR RN+LL E   D  W 
Sbjct: 117 WLIPAMDRLWIEGAEGRRRFLDRMALSFFPNHAEASLTYEKTMRERNKLLKENVRDPMWY 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E ++AE G  I+  RV  +  LS+   +   K  FP   L LT   D     S   L
Sbjct: 177 GVLETRLAETGAVIHENRVRTLTFLSN--AQAQAKTPFPTADLELTHAEDAMPVDS-VDL 233

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           K+ +    F     D  + RTL+GPHR+DL   +  K +     STGEQK +L+ + LA+
Sbjct: 234 KDAFEASRF----RDLAAGRTLVGPHRADLYGVFTAKGVPAKDCSTGEQKALLISLILAN 289

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           AR ++   G  PILLLDE++AHLD  +R AL+  ++ +G+Q +MTGT   +FDSL+  + 
Sbjct: 290 ARALAGQIGAPPILLLDEVAAHLDATRRAALYAEISALGAQAWMTGTGAELFDSLSSQSV 349

Query: 364 FMRISNHQALC 374
            + ++ +  + 
Sbjct: 350 HLEVTENDGIS 360


>gi|312112798|ref|YP_004010394.1| DNA replication and repair protein RecF [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311217927|gb|ADP69295.1| DNA replication and repair protein RecF [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 400

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 155/386 (40%), Positives = 217/386 (56%), Gaps = 22/386 (5%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           T+RI I  L +++FRNY ++ LV      +  G NG GKTN LEA+S L+ GRG R   +
Sbjct: 4   TDRIAIAKLTLTDFRNYRAVTLVTGLGPVVLAGANGAGKTNCLEAVSLLTAGRGLRSLPF 63

Query: 62  ADVTRIGSPSFFSTFAR--VEGMEGLADISIKLETRD---DRSVRCLQINDVVIRVVDEL 116
            ++ R G    ++  A   V G +      I+L        R+ R ++I+  + +    L
Sbjct: 64  PELARSGGSGGWAVAAELGVAGEDMHIGTGIQLPPDGMLTPRAARTVKIDHALAKGSGAL 123

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
            + +R+ WL PSMD +F+G + ERRRFLDR+V ++DP +      FER MR RN+ L E 
Sbjct: 124 VR-IRMLWLTPSMDGLFTGPAAERRRFLDRLVLSLDPGYGAAASAFERAMRQRNKALEE- 181

Query: 177 YFDSS-WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFL 232
            FDS    ++IEAQMA   V + +AR   I ALS  I     ++    FP   L+L G L
Sbjct: 182 -FDSPPMLTAIEAQMAAAAVAMAVARARAIAALSGEIEAERNRDPDSLFPWAALTLNGTL 240

Query: 233 DGKF-----DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           + +      D     L++ YA+ L  GR  D  + RTL GPHRSDL V +  KA+     
Sbjct: 241 EEQAAALSEDTMRDELRDGYARALAQGRDRDRAAGRTLSGPHRSDLDVAHGPKAMPARMC 300

Query: 288 STGEQKVVLVGIFLAHARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           STGEQK +LVG+ LA ARLI     G AP++LLDEI+AHLD  +R ALF  +  + +Q++
Sbjct: 301 STGEQKALLVGLVLAQARLIKRAADGIAPLILLDEIAAHLDIGRREALFSSIVALNAQVW 360

Query: 347 MTGTDKSVFDSL---NETAKFMRISN 369
           MTGTD + F  L    ET  F+ +SN
Sbjct: 361 MTGTDLATFTPLRNATETQLFV-VSN 385


>gi|83591343|ref|YP_425095.1| recombination protein F [Rhodospirillum rubrum ATCC 11170]
 gi|83574257|gb|ABC20808.1| RecF protein [Rhodospirillum rubrum ATCC 11170]
          Length = 375

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/379 (34%), Positives = 182/379 (48%), Gaps = 18/379 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L ++ FR Y  LRL    +  +  G NG GKTN+LEA+SFL+PGRG RRA+ AD  R
Sbjct: 2   VERLTLTAFRCYDRLRLDVGPRPLVLTGPNGAGKTNLLEALSFLAPGRGLRRAALADPCR 61

Query: 67  --------IGSPSFFSTFARVEGMEGL----ADISIKLETRDDRSVRCLQINDVVIRVVD 114
                    G P   +   R+    G      D+   LE       R ++I+        
Sbjct: 62  RVGGDAATAGPPWAVAAHLRLPAGPGTLGRGVDVGTGLERATAGERRLVRIDGATAGQA- 120

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            L     + WL P MD +F G + ERRRFLDR+V  +DP H  R   + +  R R RLL 
Sbjct: 121 ALGDLFSVLWLTPEMDGLFRGGASERRRFLDRLVNGLDPDHAGRTAAYAQAQRERARLLR 180

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           EG     W   +E  MA  GV I  AR ++++ L + +        FP  ++ L   +DG
Sbjct: 181 EGRASRGWLDGLEDVMARHGVAIVAARRDLVDRLGAAVRAATGP--FPGARIDLVSEVDG 238

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                     E+  +       M         GPHR DL V +  K I     STGEQK 
Sbjct: 239 WLAAGPALAAEDRLRAAL---AMARGPEAPAPGPHRDDLAVRHGPKDIPAVQASTGEQKA 295

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           VL+ + LA AR+       AP+LLLDE  AHLD  +R AL   ++  G Q +++GT+   
Sbjct: 296 VLIALILAQARVQEAARAVAPLLLLDEGVAHLDAPRRAALGEALSGQGLQAWVSGTEAQA 355

Query: 355 FDSLNETAKFMRISNHQAL 373
           FDS  + A+F+RI+    L
Sbjct: 356 FDSWAKNAQFLRIAEGAVL 374


>gi|163745037|ref|ZP_02152397.1| recombination protein F [Oceanibulbus indolifex HEL-45]
 gi|161381855|gb|EDQ06264.1| recombination protein F [Oceanibulbus indolifex HEL-45]
          Length = 365

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 200/374 (53%), Gaps = 20/374 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
            ++ +  L++S FR++    +  D +     G NG GKTNI+EAIS LSPGRG RR S  
Sbjct: 2   TQLYLSNLSLSHFRSHRRAVIDVDVRPVALYGPNGAGKTNIIEAISLLSPGRGLRRTSAQ 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D+ R      +     + G   L +I +  E    R  +     D        L +  R+
Sbjct: 62  DMARRPEALGWKMSGLLHGPSVLHEIEVWSEAGAARQTKI----DGKAAAQTALGRVARV 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL+P+MDR++   +  RRRFLDR+  ++ P H    + +E+ MR RNRLL +   + +W
Sbjct: 118 LWLIPAMDRLWIEGAEGRRRFLDRVTLSMLPDHAELSLSYEKAMRERNRLLKDMVREPAW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            +++EA+MAE G +I+  R++ + AL +   E      FP   L L            CA
Sbjct: 178 YAALEARMAETGAQIHANRLQALAALEAAQEEAQTA--FPVATLELQ-----------CA 224

Query: 243 LK---EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           +    E   + L D R  D  + RTLIGPHR+DL   Y  K +     STGEQK +LV +
Sbjct: 225 MPSDVEALRRALSDNRMRDLSAGRTLIGPHRADLEGTYAAKGVAARDCSTGEQKALLVSL 284

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA+AR I+   G  P+LLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F+SL 
Sbjct: 285 ILANARAIAADFGAPPLLLLDEVAAHLDATRRAALYDEICALGAQAWMTGTGPELFESLG 344

Query: 360 ETAKFMRISNHQAL 373
           + A+++ ++    L
Sbjct: 345 DRAQYVEVTEEDGL 358


>gi|182680050|ref|YP_001834196.1| DNA replication and repair protein RecF [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635933|gb|ACB96707.1| DNA replication and repair protein RecF [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 403

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 137/364 (37%), Positives = 196/364 (53%), Gaps = 3/364 (0%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +S+FR+Y +L L   A+  +  G+NG GKTN++EA+S  +PGRG RR   A   R
Sbjct: 15  VRRLILSDFRSYPALDLSLGAKMIVVTGENGAGKTNLIEALSLFTPGRGLRRVELASCAR 74

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125
              P  F+    +E       +   L  R +    R  +I    +        HLRI WL
Sbjct: 75  AEGPGGFAVSIEIETGAERVQLGTGLVPRSEGGFARQYRIERAPVGSARSFADHLRIVWL 134

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P+ D +F+    ERRRFLDR+V  +D  H  R+   ER +R RNR L + Y DS W  +
Sbjct: 135 TPAQDGLFAASPGERRRFLDRLVLCVDAEHGARVTVLERALRNRNRQLEDHYADSRWLDA 194

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALK 244
            E ++AE+ V +  ARVE +  L  LI E       FP   L + G L+    +      
Sbjct: 195 TEKEIAEIAVAVAAARVETVARLRRLIDESRDTITPFPWADLEIRGDLERLVGERPALEA 254

Query: 245 EE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           EE Y   L D R+ D+ + R L+GP  SDL+V +  K    A  STGEQK +LVG+ LAH
Sbjct: 255 EELYRGILRDNRRRDAAAGRALVGPQNSDLLVRHGPKQADAARSSTGEQKALLVGLVLAH 314

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           ARL++  T  AP++LLDEI+AH D  +R AL+  +  +  QI+MTG + S F  L + A 
Sbjct: 315 ARLVARATQTAPMILLDEIAAHFDASRRVALYEELAALPGQIWMTGAEASAFSGLADHAD 374

Query: 364 FMRI 367
            +++
Sbjct: 375 LLQV 378


>gi|307295030|ref|ZP_07574872.1| DNA replication and repair protein RecF [Sphingobium
           chlorophenolicum L-1]
 gi|306879504|gb|EFN10722.1| DNA replication and repair protein RecF [Sphingobium
           chlorophenolicum L-1]
          Length = 354

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 144/365 (39%), Positives = 199/365 (54%), Gaps = 19/365 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +S+FRN+A   +V D    +  GDNG GKTNILEA+S L+PGRG R A+  D+ R
Sbjct: 2   IGRLTLSDFRNHADALIVPDHSFIVLTGDNGAGKTNILEAVSMLAPGRGLRGAALRDMAR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 F   A V+G   +    +     D R VR   ++       + L  HL I WL 
Sbjct: 62  QDGTGGFGIAAEVDG--AMLGTGVLASAPDRRQVRIGGVSSSA----NALADHLSIVWLT 115

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185
           P+MDR+F      RRRFLDR+  A+ P H      +E  MR RNRLL +    D SW S+
Sbjct: 116 PAMDRLFMDSPGGRRRFLDRLTLALHPAHAVHSARYEAAMRARNRLLGDLSAADPSWLSA 175

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +EAQM E G  ++ AR +++  LS+  +E      F    L+L G  D           E
Sbjct: 176 LEAQMDEHGAALSAARTDLVARLSA-ALEDQPDHPFARPLLALEGDSD-----------E 223

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             A +L   R+ D+ + R+L GPHR DL V +  KA   A  STGEQK +L+ I LAHA 
Sbjct: 224 PLALRLARERRRDAAAGRSLSGPHRRDLAVTHAAKAQAAALCSTGEQKALLLSILLAHAA 283

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L++   G  P+LLLDE++AHLD  +R ALF  + + G Q++MTGT+ S+F+ L   ++F 
Sbjct: 284 LVAAHRGQPPVLLLDEVAAHLDPSRRAALFDRLRETGGQVWMTGTEDSLFNELPVASRFS 343

Query: 366 RISNH 370
             + H
Sbjct: 344 VTAGH 348


>gi|296115231|ref|ZP_06833872.1| recombination protein F [Gluconacetobacter hansenii ATCC 23769]
 gi|295978332|gb|EFG85069.1| recombination protein F [Gluconacetobacter hansenii ATCC 23769]
          Length = 374

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 130/362 (35%), Positives = 200/362 (55%), Gaps = 11/362 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +++FRNY  L     +  T+ VG+NG GKTN+LE++S L PGRG R A  AD+ R G 
Sbjct: 7   LVLTDFRNYRHLSWTPTSPVTVIVGENGSGKTNLLESVSLLLPGRGLRGARVADLPRHGG 66

Query: 70  PSFFSTFARVE---GME-GLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + +   AR++   G+E G+ D+++  +  R DR  R ++++   +R    ++  L   W
Sbjct: 67  -TRWGIAARIDVPDGVEAGIRDLAVGSDPARPDR--RVVRLDGEALRNRTRVSDFLSAVW 123

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P MDR+F   +  RRRFLDR+V A++P H R +   +  M  RNRLL  G  D +W S
Sbjct: 124 LTPQMDRLFQEGAAGRRRFLDRLVLAMEPGHARELAAHDHAMMQRNRLLLSGGGDGAWLS 183

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFCAL 243
           ++E  MA  GV    AR  ++  L+    +    + FP   L+L   +          A+
Sbjct: 184 ALEDAMARHGVAATAARAGLVALLNG--DDAALCDGFPATALTLESEIAQHLRHMPALAV 241

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++   ++L   R+ D       +G HR+DL +         A  STG+QK +LVG+ L+H
Sbjct: 242 EDWLREQLAASRQRDRARGSAFLGAHRTDLHMHDRATRRGAAQSSTGQQKAMLVGVVLSH 301

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           ARLI+   G AP++LLDE   HLDE +RNALFR +  + + + ++GTD + F  L + A 
Sbjct: 302 ARLIARARGQAPLILLDEPLVHLDEVRRNALFRAIGRLDTTVMLSGTDAAQFGPLRDQAA 361

Query: 364 FM 365
           F+
Sbjct: 362 FV 363


>gi|84514652|ref|ZP_01002016.1| recombination protein F [Loktanella vestfoldensis SKA53]
 gi|84511703|gb|EAQ08156.1| recombination protein F [Loktanella vestfoldensis SKA53]
          Length = 366

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 190/360 (52%), Gaps = 15/360 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +S  R++    L  D +     G NG GKTNILEA+S LSPGRG RRA   D+ R   
Sbjct: 9   LTLSHLRSHKRAVLDLDPRPLAIFGPNGAGKTNILEAVSLLSPGRGLRRAGADDLARRPE 68

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              +     ++ +  + +I    E    R +R   I+      V  L +  R+ WLVP+M
Sbjct: 69  ALGWKITGVLQSLYQVHEIETWAEAGQPRQLR---IDGKTAPQV-ALGRIARVLWLVPAM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           DR+++  +  RRRFLDR   + +P H   ++ +E+ MR RNRLL +   D  W ++IE Q
Sbjct: 125 DRLWTEGADGRRRFLDRATLSFEPGHADVVLTYEKAMRERNRLLKDMVRDPHWYAAIEGQ 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA    +I   R + I   + +  +      FP  +L+LT + D         L  +   
Sbjct: 185 MAAAATQITANRTKAIA--ALMAAQAAAVSAFPTAQLTLT-YSD--------PLPTDLQS 233

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L D R  D  + RTL+GPHR+DL   + DK +     STGEQK +L+ + LA+AR ++ 
Sbjct: 234 ALADHRSRDMAAGRTLLGPHRADLDAVFADKHVPARDCSTGEQKALLISLILANARALAQ 293

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
             G  PILLLDE++AHLD  +R AL+  +  +G+Q FMTGT   +F  L   A++  ++ 
Sbjct: 294 DFGAPPILLLDEVAAHLDATRRAALYDEICALGAQAFMTGTGPELFAELGSRAQYAEVTE 353


>gi|260428922|ref|ZP_05782899.1| DNA replication and repair protein RecF [Citreicella sp. SE45]
 gi|260419545|gb|EEX12798.1| DNA replication and repair protein RecF [Citreicella sp. SE45]
          Length = 368

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 187/353 (52%), Gaps = 11/353 (3%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FR++    +  DA+     G NG GKTN++EA+S LSPGRG RRA+  ++ R      + 
Sbjct: 13  FRSHRRAEIAVDARPVAIYGPNGAGKTNLIEAVSLLSPGRGMRRAAAQEIARRPEALGWR 72

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A +   +G+ +I I+ E    R V      D        L +  R+ WLVPSMDR++ 
Sbjct: 73  IGAELHAPDGVHEIDIRAEAGAARQVSI----DGKPAPQTALARITRVLWLVPSMDRLWI 128

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
                RRRFLDRM  +  P H    + +E+ MR RNRLL +   D+ W +++E QMA+ G
Sbjct: 129 EAPEGRRRFLDRMTLSFFPDHADASLTYEKAMRERNRLLKDQVRDAHWYAALEGQMAQAG 188

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            ++  +  +   A  +   E  + + FP  +L L        +       E     L + 
Sbjct: 189 AQLQ-SNRQAALARLAQAQEGAETQ-FPAAELELV-----STEADIPETAEGLRAALSES 241

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
           R  D  + RTLIGPHR+DL   +  K ++ +  STGEQK +L+ + LA+AR ++   G  
Sbjct: 242 RFRDMAAGRTLIGPHRADLHGVFAAKGVSASDCSTGEQKALLISLILANARALAADLGAP 301

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
           PILLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L   A+ + +
Sbjct: 302 PILLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFGELGARAQRLEV 354


>gi|162147557|ref|YP_001602018.1| recombination protein F [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786134|emb|CAP55716.1| putative DNA replication and repair protein recF [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 373

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/367 (36%), Positives = 195/367 (53%), Gaps = 7/367 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L +++FRNY  L    +A  T+  G+NG GKTN+LEA+S L PGRG R A  A++ 
Sbjct: 3   RLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEALSLLVPGRGLRGARSAEMA 62

Query: 66  RIGSPSFFSTFARVEGMEGLA-DISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           R G+ + +   AR  G +G   DI+   +  R +R  R  + +   +R    L  HL   
Sbjct: 63  RHGT-TIWGVAARFTGPDGAPFDIATGSDPARPER--RVFRRDGETLRSRAALADHLSAV 119

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P MDR+F      RRRFLDR+V A++P H R +   ++ M  RNRLL  G  D  W 
Sbjct: 120 WLTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQAMGQRNRLLAAGRADPGWL 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCA 242
           S++E  MA   V  + AR+ ++  L+      V  + FP  +L  L   +    D+   A
Sbjct: 180 SALEDSMARHAVAASAARLALVTQLNGEAAHTV-PDGFPPARLDILCPIVQQLRDRPALA 238

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++    +L  GR  DS      IG HR+D+ +         A  STG+QK +L+G+ LA
Sbjct: 239 VEDWLRGRLAAGRACDSARGGAGIGAHRADMALSDQASGRPAAQASTGQQKALLLGVVLA 298

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA L++ + G AP++LLDE   HLDE +R ALFR V    + + MTGTD   F  L   A
Sbjct: 299 HAALMTRSRGEAPMILLDEPLVHLDEARRAALFRSVGAFDATVLMTGTDADQFAPLRGRA 358

Query: 363 KFMRISN 369
            F+   N
Sbjct: 359 GFVSPRN 365


>gi|254449439|ref|ZP_05062876.1| DNA replication and repair protein RecF [Octadecabacter antarcticus
           238]
 gi|198263845|gb|EDY88115.1| DNA replication and repair protein RecF [Octadecabacter antarcticus
           238]
          Length = 341

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/344 (35%), Positives = 184/344 (53%), Gaps = 15/344 (4%)

Query: 34  GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE 93
           G NG GKTNILEA+S LSPGRG RRAS  ++TR      +   A +  +    ++    E
Sbjct: 5   GPNGAGKTNILEAVSILSPGRGLRRASSEEMTRRPEALGWKVTADLTSLNKRHEVEAWSE 64

Query: 94  TRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP 153
               R  +     D        L +  R+ WL+P+MDR++   +  RRRFLDR   + +P
Sbjct: 65  NGASRQTKI----DGKAAAQTALGRIGRVLWLIPAMDRLWIEAAEGRRRFLDRATLSFEP 120

Query: 154 RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
            H    + +E+ MR RNRLL +   D+ W +++E QMA+ G +I+  R++ I+ L+    
Sbjct: 121 MHADAALTYEKAMRERNRLLKDMVRDAHWYTALERQMADAGAQIHRNRMQAIDLLTD--A 178

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF---DGRKMDSMSRRTLIGPHR 270
           +   +  FP   L+LT           C   ++ A  L      R  D  + RTLIGPHR
Sbjct: 179 QQAAQTAFPIALLTLT------HSDPVCDAPDDPAALLAALAGNRPRDMAAGRTLIGPHR 232

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
           +DL   +  K +     STGEQK +L+ + LA+AR +++  G  PILLLDE++AHLD  +
Sbjct: 233 ADLGAIFAAKDVPAKDCSTGEQKALLISLILANARALADDFGAPPILLLDEVAAHLDATR 292

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
           R AL+  +T +G+Q FMTGT   +F  L   A++  ++    + 
Sbjct: 293 RAALYSEITALGAQAFMTGTGPELFGELGTAAQYAYVTEENGVS 336


>gi|16124414|ref|NP_418978.1| recombination protein F [Caulobacter crescentus CB15]
 gi|221233097|ref|YP_002515533.1| recombination protein F [Caulobacter crescentus NA1000]
 gi|239977550|sp|B8GXP9|RECF_CAUCN RecName: Full=DNA replication and repair protein recF
 gi|239977551|sp|P0CAW1|RECF_CAUCR RecName: Full=DNA replication and repair protein recF
 gi|13421272|gb|AAK22146.1| recF protein [Caulobacter crescentus CB15]
 gi|220962269|gb|ACL93625.1| DNA replication and repair protein recF [Caulobacter crescentus
           NA1000]
          Length = 387

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 130/375 (34%), Positives = 200/375 (53%), Gaps = 20/375 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT-RIG 68
           L +++FR+Y   RL    +     G NG GKTN+LEAIS LSPG+G R  S A+V  R+ 
Sbjct: 9   LTLADFRSYERARLETGGRSVYLFGANGAGKTNLLEAISLLSPGKGLRGVSLAEVGRRLP 68

Query: 69  SPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             +    +A    ++   D  +++ T   +   + R +++    +     L  H+R  WL
Sbjct: 69  GEAVGRAWAVAAEVQSGEDAPVRIGTGVEQGGAARRTVRLEGETV-PPGRLADHVRPIWL 127

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEGYFDS 180
            P+ DR+F   + ERRRF DR+VFA +P H      +++  R R RLL     T    D+
Sbjct: 128 TPAQDRLFLEAASERRRFFDRLVFAGEPAHAANANGYDKAQRERMRLLVDAAETGAPADA 187

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-----FLDGK 235
           +W +++EA++AE G  +  AR   + AL + I +      FP  +L LTG      L+G 
Sbjct: 188 AWLTALEARLAEFGALLAQARARTLLALQAEI-DGRGDRPFPLARLGLTGEWERMALEGA 246

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
               F  ++ + A+ L   R  D  + R L GPHR DL + + +K    A  STGEQK +
Sbjct: 247 ---PFAEIELKLAQALASARARDGAAGRALTGPHRGDLAIFHVEKDRPAAECSTGEQKAL 303

Query: 296 LVGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           ++ + LA  ARL    +   P++LLDE++AHLD  +R AL   +T +  Q F+TGTD+S+
Sbjct: 304 ILNLVLAQAARLSRAESAPNPVILLDEVAAHLDLTRRAALADELTALKLQAFLTGTDESL 363

Query: 355 FDSLNETAKFMRISN 369
           FD L   A  +R+ +
Sbjct: 364 FDHLKGRALGVRVGD 378


>gi|295691339|ref|YP_003595032.1| DNA replication and repair protein RecF [Caulobacter segnis ATCC
           21756]
 gi|295433242|gb|ADG12414.1| DNA replication and repair protein RecF [Caulobacter segnis ATCC
           21756]
          Length = 387

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 204/375 (54%), Gaps = 20/375 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT-RIG 68
           L +++FR+Y   RL    +     G NG GKTN+LEAIS L+PG+G R A+ A+V  R+ 
Sbjct: 9   LTLTDFRSYERARLETSGRSVYLFGPNGAGKTNLLEAISLLTPGKGLRGANLAEVGRRLP 68

Query: 69  SPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             +    +A    +E   D  +++ T   +   S R ++++   +     L  H+R  WL
Sbjct: 69  GEATGRPWAVAAEVESGPDAPVRIGTGVEQGGASRRTVRLDGETV-SPGRLADHVRPIWL 127

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FDS 180
            P+ DR+F   + ERRRF DR+VFA +P+H      +++  R R RLL E        D+
Sbjct: 128 TPAQDRLFLEAASERRRFFDRLVFAGEPQHAANANAYDKAQRERMRLLIEAVERGAPPDA 187

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-----FLDGK 235
           +W +++EA++AE G  +  AR   + AL + I +      FP  +L+LTG      L+G 
Sbjct: 188 TWLNALEARLAESGALMAQARARTLQALQAEI-DGRGDRPFPQARLTLTGDWEKLALEGV 246

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
               F  ++E+ A  L   R  D  + R L GPHR DL + + +K    A  STGEQK +
Sbjct: 247 ---PFAEIEEKLAAALLSARARDGAAGRALTGPHRGDLAIFHVEKDRPAAECSTGEQKAL 303

Query: 296 LVGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           ++ + LA  ARL    +   P++LLDE++AHLD  +R AL   +T +  Q F+TGTD+S+
Sbjct: 304 ILNLVLAQAARLSRAESAPNPVILLDEVAAHLDLARRAALADELTALKLQAFLTGTDESL 363

Query: 355 FDSLNETAKFMRISN 369
           FD L   A  +R+ +
Sbjct: 364 FDHLKGRALGVRVCD 378


>gi|15891955|ref|NP_359669.1| recombination protein F [Rickettsia conorii str. Malish 7]
 gi|20978615|sp|Q92JN5|RECF_RICCN RecName: Full=DNA replication and repair protein recF
 gi|15619066|gb|AAL02570.1| RecF protein [Rickettsia conorii str. Malish 7]
          Length = 360

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 120/358 (33%), Positives = 187/358 (52%), Gaps = 6/358 (1%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LN+  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  A+V +   
Sbjct: 9   LNLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCKTSE 68

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                  A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL P M
Sbjct: 69  DHCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPHM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           + IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   IE +
Sbjct: 125 EGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDRRDDNWLKIIEEK 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA++   I   R++ +  +   I +   +  FP   LS+ G ++ K       +      
Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKKNIVSFITA 242

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA       
Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
            T  APILLLDE+  HLD+ +R  L   +T +  Q+++T T+    D+    A+ +++
Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIDNFATKAQLIKL 360


>gi|157803214|ref|YP_001491763.1| recombination protein F [Rickettsia canadensis str. McKiel]
 gi|226737825|sp|A8EX95|RECF_RICCK RecName: Full=DNA replication and repair protein recF
 gi|157784477|gb|ABV72978.1| recombination protein F [Rickettsia canadensis str. McKiel]
          Length = 360

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 187/356 (52%), Gaps = 6/356 (1%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  AD+ +  S  
Sbjct: 11  LENYRNFKNLELKIDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICKT-SED 69

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             S  A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL P M+ 
Sbjct: 70  HCSIKALLQSKLGLAEFTTQFKLSSNR--RITEYNESKI-ANNELSKFTSMVWLTPQMEG 126

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
           IF+   +ERR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   IE +MA
Sbjct: 127 IFTSGKVERRKFLDRIVYNFDPKHAELVGKYEYYMHERNKILAEEIQDDNWLKIIEEKMA 186

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
           ++   I + R++ +  +   I     +  FP   LS+ G ++ K       +      +L
Sbjct: 187 DISNHIAVNRLKTLEFMQQTINNL--ENEFPKADLSIDGIVEQKILDGEENIVSVITAEL 244

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
           +  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA        T
Sbjct: 245 YKTRNKDKLIGRTSFGVHKSDFLVKHKKKNILAKLCSTGEQKAILIAIILAEMNYAIKLT 304

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
             AP+LLLDE+  HLD+ +R+ L    T +  Q+++T T+    ++    A+ +++
Sbjct: 305 KIAPVLLLDEVFVHLDDKRRDYLTEFFTYLNLQLWITTTNLESIENFASKAQLIKL 360


>gi|294010882|ref|YP_003544342.1| DNA replication and repair protein RecF [Sphingobium japonicum
           UT26S]
 gi|292674212|dbj|BAI95730.1| DNA replication and repair protein RecF [Sphingobium japonicum
           UT26S]
          Length = 356

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 142/365 (38%), Positives = 199/365 (54%), Gaps = 17/365 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +S+FRN+A   ++ D    +  GDNG GKTNILEA+S L+PGRG R A+  D+ R
Sbjct: 2   IGRLTLSDFRNHADALIMPDHSFIVLTGDNGAGKTNILEAVSMLAPGRGLRGAALRDMAR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 F   A V+G+  +    +     D R VR       V    + L  HL I WL 
Sbjct: 62  QDGAGGFGIAAEVDGV--MLGTGVLASAPDRRQVRI----GGVASSANALADHLSIVWLT 115

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185
           P+MDR+F      RRRFLDR+  A+ P H      +E  MR RNRLL +    D SW S+
Sbjct: 116 PAMDRLFMDSPGGRRRFLDRLTLALHPAHAAHSARYEAAMRARNRLLNDLSAADPSWLSA 175

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +E QM E G  +  AR +++  L +  +E      F    L++ G  +G+ D       E
Sbjct: 176 LETQMDEHGAALAAARADLVGRLQA-ALEDQPDHPFARPLLAIEG--EGEGD-------E 225

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
               +L   R+ D+ + RTL GPHR DL V +  KA   A  STGEQK +L+ I LAHA 
Sbjct: 226 PLGLRLARERRRDAAAGRTLSGPHRQDLAVVHAAKAQAAALCSTGEQKALLLSILLAHAA 285

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L++   G  P+LLLDE++AHLD  +R ALF  + + GSQ++MTGT+ ++F+ L   ++F 
Sbjct: 286 LVAAHRGQPPVLLLDEVAAHLDPSRRAALFDRLRETGSQVWMTGTESALFNGLPVASRFC 345

Query: 366 RISNH 370
             + H
Sbjct: 346 VTAGH 350


>gi|91204849|ref|YP_537204.1| recombination protein F [Rickettsia bellii RML369-C]
 gi|122426139|sp|Q1RKJ9|RECF_RICBR RecName: Full=DNA replication and repair protein recF
 gi|91068393|gb|ABE04115.1| DNA replication and repair protein RecF [Rickettsia bellii
           RML369-C]
          Length = 360

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 189/356 (53%), Gaps = 6/356 (1%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  +RN+ +L L  D      +G+NG GKTNILEAIS   PGRG R A  AD+ R  S  
Sbjct: 11  VENYRNFKNLELKTDNIPITIIGENGSGKTNILEAISLFYPGRGLRSARLADICR-ESED 69

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             S  A ++   GLA+ S +++   +R  R  + N+  I   +EL+K   + WL P M+ 
Sbjct: 70  HCSVRALLQSKLGLAEFSTQIKRISNR--RTTEYNNSKI-ANNELSKFTSMVWLTPQMEG 126

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
           IF+  + +RR+F DR+V+  DP+H   +  +E  M+ RN++L E  +D++W  +IE +MA
Sbjct: 127 IFTSGTSDRRKFFDRIVYNFDPKHAELVSKYEHYMQERNKILAEDMWDNNWLKTIEEKMA 186

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
           +  + I   R++ +  +   I +   +  FP  +LS+ G ++ K       +    A +L
Sbjct: 187 DTSIYIANNRLKTLEFMQQAIDDL--ENEFPKAELSIDGMVEQKILNGEEDVVGFIAAEL 244

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
              R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA        T
Sbjct: 245 HKTRDKDKLLGRTSFGVHKSDFLVKHKHKNILAKFCSTGEQKAILIAIILAEMNYAIKLT 304

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
             APILLLDE+  HLD+ +RN L      I  Q+++T TD    +     ++ +++
Sbjct: 305 KTAPILLLDEVFVHLDDRRRNYLTEFFISINLQLWVTATDLKGIEEFGNKSQLIKL 360


>gi|157825165|ref|YP_001492885.1| recombination protein F [Rickettsia akari str. Hartford]
 gi|166221858|sp|A8GLV2|RECF_RICAH RecName: Full=DNA replication and repair protein recF
 gi|157799123|gb|ABV74377.1| recombination protein F [Rickettsia akari str. Hartford]
          Length = 360

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 188/358 (52%), Gaps = 6/358 (1%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+++ +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A   D+ +  S
Sbjct: 9   LSLANYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLDDICK-AS 67

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             +    A ++   GLA+ S  ++   +R  R  + N+  I   +EL+K   + WL P M
Sbjct: 68  EDYCIVKALLQSQLGLAEFSTHIKRNSNR--RITEYNESKI-ANNELSKFTSMVWLTPQM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           + IF+  S +RR+FLDR+V+   P+H   +  +E  M  RN++L E   D +W   IE +
Sbjct: 125 EGIFTSGSSDRRKFLDRIVYNFYPKHAELVSKYEYYMHERNKILAEDIRDDNWLKIIEGK 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA++   I   R++ +  +   I E   +  FP   LS+ G ++ +       L      
Sbjct: 185 MADMSSHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQRILDGEENLVNFITA 242

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    +  
Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYVIK 302

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
            T  APILLLDE+  HLD+ +R  L    T +  Q+++T T+    ++    A+ +++
Sbjct: 303 LTKIAPILLLDEVFVHLDDTRRQYLIEFFTTLSMQLWVTDTNLEGIENFASKAQLIKL 360


>gi|34581007|ref|ZP_00142487.1| RecF protein [Rickettsia sibirica 246]
 gi|28262392|gb|EAA25896.1| RecF protein [Rickettsia sibirica 246]
          Length = 360

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 187/358 (52%), Gaps = 6/358 (1%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  A+V +   
Sbjct: 9   LSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCKTSE 68

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                  A ++   GLA+ + + +   +R  R  + N+  I   +ELNK   + WL P M
Sbjct: 69  DHCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELNKFTSMVWLTPHM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           + IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   IE +
Sbjct: 125 EGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKIIEEK 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA++   I   R++ +  +   I +   +  FP   LS+ G ++ K       +      
Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKKNIVSFITA 242

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA       
Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
            T  APILLLDE+  HLD+ +R  L   +T +  Q+++T T+    ++    A+ +++
Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFATKAQLIKL 360


>gi|157826419|ref|YP_001495483.1| recombination protein F [Rickettsia bellii OSU 85-389]
 gi|226737824|sp|A8GUF0|RECF_RICB8 RecName: Full=DNA replication and repair protein recF
 gi|157801723|gb|ABV78446.1| recombination protein F [Rickettsia bellii OSU 85-389]
          Length = 360

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/356 (33%), Positives = 188/356 (52%), Gaps = 6/356 (1%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  +RN+ +L L  D      +G+NG GKTNILEAIS   PGRG R A  AD+ R  S  
Sbjct: 11  VENYRNFKNLELKTDNIPITIIGENGSGKTNILEAISLFYPGRGLRSARLADICR-ESED 69

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             S  A ++   GLA+ S +++   +R  R  + N+  I   +EL+K   + WL P M+ 
Sbjct: 70  HCSVRALLQSKLGLAEFSTQIKRISNR--RTTEYNNSKI-ANNELSKFTSMVWLTPQMEG 126

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
           IF   + +RR+F DR+V+  DP+H   +  +E  M+ RN++L E  +D++W  +IE +MA
Sbjct: 127 IFMSGTSDRRKFFDRIVYNFDPKHAELVSKYEHYMQERNKILAEDMWDNNWLKTIEEKMA 186

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
           +  + I   R++ +  +   I +   +  FP  +LS+ G ++ K       +    A +L
Sbjct: 187 DTSIYIANNRLKTLEFMQQAIDDL--ENEFPKAELSIDGMVEQKILNGEEDVVGFIAAEL 244

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
              R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA        T
Sbjct: 245 HKTRDKDKLLGRTSFGVHKSDFLVKHKHKNILAKFCSTGEQKAILIAIILAEMNYAIKLT 304

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
             APILLLDE+  HLD+ +RN L      I  Q+++T TD    +     ++ +++
Sbjct: 305 KTAPILLLDEVFVHLDDRRRNYLTEFFISINLQLWVTATDLKGIEEFGNKSQLIKL 360


>gi|97180901|sp|Q4UNG8|RECF_RICFE RecName: Full=DNA replication and repair protein recF
          Length = 364

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 184/358 (51%), Gaps = 6/358 (1%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  AD+ +   
Sbjct: 9   LTLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICKASE 68

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                  A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL P M
Sbjct: 69  DQCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPQM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           + IF+  S +RR+FLDR+V+  D +H   +  +E  M  RN++L E   D +W   IE +
Sbjct: 125 EGIFTSGSSDRRKFLDRIVYNFDSKHAELVSKYEYYMYERNKILAEDIRDDNWLKIIEEK 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA++   I   R++ +  +   I E   +  FP   LS+ G ++ K       +      
Sbjct: 185 MADMSSHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQKILDGKENIVNFITA 242

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA       
Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
            T  APILLLDE+  HLD+ +R  L    T +  Q+++T TD    ++    A+ +++
Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRGYLIEFFTGLNMQLWVTATDLEGIENFANKAQLIKL 360


>gi|67458427|ref|YP_246051.1| recombination protein F [Rickettsia felis URRWXCal2]
 gi|67003960|gb|AAY60886.1| DNA replication and repair protein RecF [Rickettsia felis
           URRWXCal2]
          Length = 420

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 119/358 (33%), Positives = 184/358 (51%), Gaps = 6/358 (1%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  AD+ +   
Sbjct: 65  LTLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICKASE 124

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                  A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL P M
Sbjct: 125 DQCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPQM 180

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           + IF+  S +RR+FLDR+V+  D +H   +  +E  M  RN++L E   D +W   IE +
Sbjct: 181 EGIFTSGSSDRRKFLDRIVYNFDSKHAELVSKYEYYMYERNKILAEDIRDDNWLKIIEEK 240

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA++   I   R++ +  +   I E   +  FP   LS+ G ++ K       +      
Sbjct: 241 MADMSSHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQKILDGKENIVNFITA 298

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA       
Sbjct: 299 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 358

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
            T  APILLLDE+  HLD+ +R  L    T +  Q+++T TD    ++    A+ +++
Sbjct: 359 LTKIAPILLLDEVFVHLDDKRRGYLIEFFTGLNMQLWVTATDLEGIENFANKAQLIKL 416


>gi|157964093|ref|YP_001498917.1| recombination protein F [Rickettsia massiliae MTU5]
 gi|166918725|sp|A8F0D4|RECF_RICM5 RecName: Full=DNA replication and repair protein recF
 gi|157843869|gb|ABV84370.1| DNA replication and repair protein RecF [Rickettsia massiliae MTU5]
          Length = 360

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 186/358 (51%), Gaps = 6/358 (1%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  AD+ +   
Sbjct: 9   LSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICKTSE 68

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                  A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL P M
Sbjct: 69  DHCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPHM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           + IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   IE +
Sbjct: 125 EGIFTSSSSDRRKFLDRIVYNFDPKHTELVSKYEYYMHERNKILVEDIRDDNWLKIIEEK 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA++   I   R++ +  +   I +   +  FP   LS+ G ++ K       +      
Sbjct: 185 MADISNHIANNRLKTLEFMQHAIDDL--ENEFPKADLSIDGIVEQKILNGEENIVSFITA 242

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA       
Sbjct: 243 ELYQTRNNDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
            T  APILLLDE+  HLD+ +R  L    T +  Q+++T T+    ++    A+ +++
Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFFTGLNMQLWVTTTNLEGIENFATKAQLIKL 360


>gi|157827903|ref|YP_001494145.1| recombination protein F [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932591|ref|YP_001649380.1| recombination protein F [Rickettsia rickettsii str. Iowa]
 gi|166221859|sp|A8GQG2|RECF_RICRS RecName: Full=DNA replication and repair protein recF
 gi|189039635|sp|B0BVU8|RECF_RICRO RecName: Full=DNA replication and repair protein recF
 gi|157800384|gb|ABV75637.1| recombination protein F [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907678|gb|ABY71974.1| DNA replication and repair protein [Rickettsia rickettsii str.
           Iowa]
          Length = 360

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 187/358 (52%), Gaps = 6/358 (1%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  A+V +   
Sbjct: 9   LSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCKTSE 68

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                  A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL P M
Sbjct: 69  DHCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPHM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           + IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   IE +
Sbjct: 125 EGIFTSGSNDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKIIEEK 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA++   I   R++ +  +   I +   +  FP   LS+ G ++ K       +      
Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKENIVSFITA 242

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA       
Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
            T  APILLLDE+  HLD+ +R  L   +T +  Q+++T T+    ++    A+ +++
Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFANKAQLIKL 360


>gi|114568557|ref|YP_755237.1| DNA replication and repair protein RecF [Maricaulis maris MCS10]
 gi|114339019|gb|ABI64299.1| DNA replication and repair protein RecF [Maricaulis maris MCS10]
          Length = 384

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 191/366 (52%), Gaps = 15/366 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-TRIG 68
           L ++ FR+Y  L L          G+NG GKTN+LEAISFL+PGRG R A    V TR G
Sbjct: 17  LRLTNFRSYPDLDLELSPAPVALFGENGAGKTNLLEAISFLAPGRGMRSAGADGVATRSG 76

Query: 69  S--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           +     ++ FA  +  EG   + +       R  R     D      + L + + + WL 
Sbjct: 77  ADIAPEWAVFAEADTREGGFRLGVGARGSARRETRI----DGEPAAQNALARLMPMIWLT 132

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P+ DR+F+G   +R +F DR+V A DP H      +E+    R RLL EG  D SW  +I
Sbjct: 133 PAQDRLFAGPRADRLKFFDRLVHAADPAHADAASAYEKSRTRRQRLLDEGGQDPSWLGAI 192

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCALK 244
           E +MA  GV +  AR   ++AL  L  E  Q+    FP   L+L G ++    +   A +
Sbjct: 193 EVEMAGHGVAMAAAR---LDALIRLQGEIDQRPEGVFPQADLALDGAVEADLAEGLTAGE 249

Query: 245 EE--YAKKLFDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            E  +   L DGR+ D+ + RTL  GPHR++L+  +  K       STGEQK +++ + L
Sbjct: 250 AEDRFLAALRDGRRRDAAAGRTLTRGPHRTELLARHRAKDQPAGDCSTGEQKALILTLAL 309

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           A AR +    G AP+LLLDE  AHLD  +R+ L R +   GSQ ++TG +K +F+   + 
Sbjct: 310 AQARALGQQWGVAPLLLLDEACAHLDALRRDGLAREILASGSQAWLTGVEKVLFEPFGDA 369

Query: 362 AKFMRI 367
            ++  +
Sbjct: 370 IQYREV 375


>gi|238650345|ref|YP_002916197.1| recombination protein F [Rickettsia peacockii str. Rustic]
 gi|259563671|sp|C4K0P8|RECF_RICPU RecName: Full=DNA replication and repair protein recF
 gi|238624443|gb|ACR47149.1| recombination protein F [Rickettsia peacockii str. Rustic]
          Length = 360

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 187/358 (52%), Gaps = 6/358 (1%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  A+V +   
Sbjct: 9   LSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCKTSE 68

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                  A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL P M
Sbjct: 69  DHCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPHM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           + IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   IE +
Sbjct: 125 EGIFTSGSNDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKIIEEK 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA++   I   R++ +  +   I +   +  FP   LS+ G ++ K       +      
Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKENIVSFITA 242

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA       
Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
            T  APILLLDE+  HLD+ +R  L   +T +  Q+++T T+    ++    A+ +++
Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFATKAQLIKL 360


>gi|294675560|ref|YP_003576175.1| DNA replication and repair protein RecF [Rhodobacter capsulatus SB
           1003]
 gi|294474380|gb|ADE83768.1| DNA replication and repair protein RecF [Rhodobacter capsulatus SB
           1003]
          Length = 352

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/363 (33%), Positives = 187/363 (51%), Gaps = 24/363 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++    L  DA+     G NG GKT++LEA+S LSPGRG RRAS  ++ R
Sbjct: 2   LRDLTLLQFRSHRRAVLALDARPVALYGPNGAGKTSVLEAVSLLSPGRGLRRASAEELIR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 +   A       L D  ++       S   L       +V   L + LR+ WLV
Sbjct: 62  RQEQVGWKIRAT------LTDYEVETSALPGASREVLIDGKAAAQVA--LGRLLRVLWLV 113

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P+MDR++   +  RRRFLDRM  +  P H   ++ +E+ MR RNRLL +   D++W  ++
Sbjct: 114 PAMDRLWIEAAEGRRRFLDRMTLSFFPTHAEAVLAYEKAMRERNRLLKDEIRDAAWYGAL 173

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MAE G  +   R + +  L++             + L+  G              E+
Sbjct: 174 ETRMAEAGALMTAHRRQALAQLATAQAGAATAFPAADLGLTAEG-------------PED 220

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
            A  L +GR+ D  + RTL GPHR DL   Y +KAI     STGEQK +L+ + LA+   
Sbjct: 221 LATALAEGRRRDMAAGRTLEGPHRVDLTAVYAEKAIPADQCSTGEQKALLISLLLAN--- 277

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
                G   +LLLDE++AHLD  +R AL+  +  + +Q+ MTGT   +FDSL E  ++ +
Sbjct: 278 ARALAGENTVLLLDEVAAHLDAGRRAALYDEICALPAQVLMTGTGAELFDSLGERGRYWQ 337

Query: 367 ISN 369
           ++ 
Sbjct: 338 VTE 340


>gi|85710419|ref|ZP_01041483.1| recombinational DNA repair ATPase [Erythrobacter sp. NAP1]
 gi|85687597|gb|EAQ27602.1| recombinational DNA repair ATPase [Erythrobacter sp. NAP1]
          Length = 362

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 191/373 (51%), Gaps = 25/373 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + +  FRN+A   L   A   + VG+NG GKTN+LEAIS LSPGRG RRA+  D+
Sbjct: 1   MALAKITLQNFRNHARSELAETAHFNLLVGENGAGKTNVLEAISLLSPGRGLRRANLTDL 60

Query: 65  TRIGS----PSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCL-QIN--DVVIRVVDEL 116
            R       P  F+  A  +E  +G     I   T  +R  R L +IN  D     + E 
Sbjct: 61  ARKAPGDAQPGAFAIGASLIE--QGQVSARIGTYTEAERPTRRLVRINGADASASALSEW 118

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           +    +SWL P+MD +F+  +  RRRF+DRM  AI+P H + +   E  +R RNRLL E 
Sbjct: 119 HA---VSWLTPAMDGLFTDSAGARRRFVDRMALAIEPGHAKAVNQLEIALRERNRLLEE- 174

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
           + D+ W  +IEAQ A+ G  +   R  +I  LS  +  +  +   P  +  LT    G  
Sbjct: 175 HGDARWLDAIEAQAAQHGSVVAANRSRLIAMLSDELSAFPPE---PFARPILTYRPGGPL 231

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                   EE   +    R  D  + R L GPHR +L V         A  STGEQK +L
Sbjct: 232 ------APEELLAEFARARPRDRAAGRALTGPHRDELEVVMMGTGQPAASSSTGEQKAML 285

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + I LAH  L S  +G   +LLLDE++AHLD  +R ALF  +    +Q++MTGT+ + F 
Sbjct: 286 IAITLAHGVLAS--SGRPSVLLLDEVAAHLDPVRRKALFDRLRAGKAQVWMTGTELAPFA 343

Query: 357 SLNETAKFMRISN 369
            + E A   R+S 
Sbjct: 344 EIEEEAAVWRVSG 356


>gi|1049325|gb|AAB51449.1| RecF [Caulobacter crescentus CB15]
          Length = 388

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/373 (33%), Positives = 195/373 (52%), Gaps = 15/373 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT-RIG 68
           L +++FR+Y   RL    +     G NG GKTN+LEAIS LSPG+G R  S A+V  R+ 
Sbjct: 9   LTLADFRSYERARLETGGRSVYLFGANGAGKTNLLEAISLLSPGKGLRGVSLAEVGRRLP 68

Query: 69  SPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             +    +A    ++   D  +++ T   +   + R +++    +     L  H+R  WL
Sbjct: 69  GEAVGRAWAVAAEVQSGEDAPVRIGTGVEQGGAARRTVRLEGETV-PPGRLADHVRPIWL 127

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR------GRNRLLTEGYFD 179
            P+ DR+F   + ERRRF DR+VFA +P H      +++  R       R R       D
Sbjct: 128 TPAQDRLFLEAASERRRFFDRLVFAGEPAHAANANGYDKAQRRAYAPACRRRRNGRAPAD 187

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFD 237
           ++W +++EA++AE G  +  AR   + AL + I +      FP  +L LTG  +      
Sbjct: 188 AAWLTALEARLAEFGALLAQARARTLLALQAEI-DGRGDRPFPLARLGLTGEWERMAVEG 246

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
             F  ++ + A+ L   R  D  + R L GPHR DL + + +K    A  STGEQK +++
Sbjct: 247 APFAEIELKLAQALASARARDGAAGRALTGPHRGDLAIFHVEKDRPAAECSTGEQKALIL 306

Query: 298 GIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
            + LA  ARL    +   P++LLDE++AHLD  +R AL   +T +  Q F+TGTD+S+FD
Sbjct: 307 NLVLAQAARLSRAESAPNPVILLDEVAAHLDLTRRAALADELTALKLQAFLTGTDESLFD 366

Query: 357 SLNETAKFMRISN 369
            L   A  +R+ +
Sbjct: 367 HLKGRALGVRVGD 379


>gi|229586258|ref|YP_002844759.1| recombination protein F [Rickettsia africae ESF-5]
 gi|259563670|sp|C3PM56|RECF_RICAE RecName: Full=DNA replication and repair protein recF
 gi|228021308|gb|ACP53016.1| DNA replication and repair protein RecF [Rickettsia africae ESF-5]
          Length = 360

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 117/358 (32%), Positives = 186/358 (51%), Gaps = 6/358 (1%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  A+V +   
Sbjct: 9   LSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCKTSE 68

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                  A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL P M
Sbjct: 69  DHCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTPHM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           + IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   IE +
Sbjct: 125 EGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKIIEEK 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA++   I   R++ +  +   I +   +  FP   LS+ G ++ K       +      
Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKKNIVSFITA 242

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA       
Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
            T  APILLLDE+  HLD+ +R  L   +  +  Q+++T T+    ++    A+ +++
Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFLIGLNMQLWVTTTNLEGIENFATKAQLIKL 360


>gi|51473311|ref|YP_067068.1| recombination protein F [Rickettsia typhi str. Wilmington]
 gi|81692324|sp|Q68XQ6|RECF_RICTY RecName: Full=DNA replication and repair protein recF
 gi|51459623|gb|AAU03586.1| DNA replication and repair protein RecF [Rickettsia typhi str.
           Wilmington]
          Length = 360

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 187/362 (51%), Gaps = 14/362 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LN+  +RN+ +L L  D    I  G+NG GKTNILEAIS   PGRG R +   D+ +  S
Sbjct: 9   LNLENYRNFKNLELKIDNIPIILTGENGSGKTNILEAISLFYPGRGLRSSKLTDICK-TS 67

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             +    A ++   G+AD S  ++   +R  R  + N   I   +EL+K   + WL P M
Sbjct: 68  EDYCRVKALLQSKLGIADFSTHIKRNSNR--RITEYNASKI-ANNELSKFTSMVWLTPQM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           + IF+  S +RR+FLDR+V+  D +H   +  +E  M  RN++L E   D++W   IE  
Sbjct: 125 EGIFTSSSTDRRKFLDRIVYNFDTKHAELLNKYEYYMHERNKILAEDIRDNNWLKIIEEN 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA +   I   R++ I  +   I E ++ E FP   LS+    DG  +Q    ++E+   
Sbjct: 185 MANISNIIANNRLKTIRFMQQAIDE-IENE-FPKADLSI----DGIIEQKILNVEEDIVS 238

Query: 250 ----KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
               +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA   
Sbjct: 239 FIITELYQTRSKDKLLGRTSFGIHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMN 298

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
                T   PILLLDEI  HLD+ +R  L    T +  Q+++T T+    ++    A+ +
Sbjct: 299 STIKLTKITPILLLDEIFVHLDDKRRQYLMDFFTALNIQLWVTATNLDGIENFANKAQLI 358

Query: 366 RI 367
           ++
Sbjct: 359 KL 360


>gi|209542191|ref|YP_002274420.1| recombination protein F [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529868|gb|ACI49805.1| DNA replication and repair protein RecF [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 373

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 133/367 (36%), Positives = 194/367 (52%), Gaps = 7/367 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L +++FRNY  L    +A  T+  G+NG GKTN+LEA+S L PGRG R A  A++ 
Sbjct: 3   RLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEALSLLVPGRGLRGARSAEMA 62

Query: 66  RIGSPSFFSTFARVEGMEGLA-DISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           R G+ + +   AR  G +G   DI+   +  R +R  R  + +   +R    L  HL   
Sbjct: 63  RHGT-TIWGVAARFTGPDGAPFDIATGSDPARPER--RVFRRDGETLRSRAALADHLSAV 119

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P MDR+F      RRRFLDR+V A++P H R +   ++ M  RNRLL  G  D  W 
Sbjct: 120 WLTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQAMGQRNRLLAAGRADPGWL 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCA 242
           S++E  MA   V  + AR+ ++  L+      V  + FP  +L  L   +    D+   A
Sbjct: 180 SALEDSMARHAVAASAARLALVTQLNGEAAHTV-PDGFPPARLDILCPIVQQLRDRPALA 238

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++    +L  GR  D       +G HR+D+ +         A  STG+QK +L+G+ LA
Sbjct: 239 VEDWLRGRLAAGRAADGARGGAGMGAHRADMALSDQASGRPAAQASTGQQKALLLGVVLA 298

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA L++ + G AP++LLDE   HLDE +R ALFR V    + + MTGTD   F  L   A
Sbjct: 299 HAALMTRSRGEAPMILLDEPLVHLDEARRAALFRSVGAFDATVLMTGTDADQFAPLRGRA 358

Query: 363 KFMRISN 369
            F+   N
Sbjct: 359 GFVSPRN 365


>gi|167644130|ref|YP_001681793.1| recombination protein F [Caulobacter sp. K31]
 gi|259563357|sp|B0T360|RECF_CAUSK RecName: Full=DNA replication and repair protein recF
 gi|167346560|gb|ABZ69295.1| SMC domain protein [Caulobacter sp. K31]
          Length = 392

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 133/383 (34%), Positives = 190/383 (49%), Gaps = 17/383 (4%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R  +  L +++FR+Y    L  D       G NG GKTN+LEAIS LSPG+G R +S  
Sbjct: 2   SRAALLSLTLTDFRSYERATLRPDGASVYLFGANGAGKTNLLEAISLLSPGKGLRGSSLI 61

Query: 63  DVTR--IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE----- 115
           +V R   G  +  +     E      D       R    V        ++R+  E     
Sbjct: 62  EVGRRLPGEATGRAWAVAAETEAPQTDFGQDEPVRLGTGVELAGAARRIVRIDGETVPPG 121

Query: 116 -LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            L  H+R  WL P+ DR+F   + ERRRF DR+VFA +P H      +++  R R RLLT
Sbjct: 122 RLADHVRPIWLTPAQDRLFLEAASERRRFFDRLVFAGEPAHAGHANAYDKAQRERMRLLT 181

Query: 175 EGY-----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
           +        D+ W +++EA++   G  +  AR   + AL + I +      FP  +L+LT
Sbjct: 182 DAAESGQPADAVWLTALEARLGAAGALMANARARTLMALQAEI-DSRGDRPFPRARLALT 240

Query: 230 GFLD--GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           G  +           ++   A  L   R  D  + R L GPHR DL + + DK    A  
Sbjct: 241 GEWEKLALVGVEIAEIEARLAAALAAARPRDGAAGRALTGPHRGDLAIHHVDKDRPAAEC 300

Query: 288 STGEQKVVLVGIFLAHA-RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           STGEQK +++ + LA A RL        PILLLDE++AHLD  +R AL   +T +G Q F
Sbjct: 301 STGEQKALILNLVLAQAARLSRAKDAPNPILLLDEVAAHLDLKRRAALADEITALGLQAF 360

Query: 347 MTGTDKSVFDSLNETAKFMRISN 369
           +TGTD+S+FD L   A  +R+S 
Sbjct: 361 LTGTDQSLFDHLKGRALGVRVSE 383


>gi|239948452|ref|ZP_04700205.1| DNA replication and repair protein RecF [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922728|gb|EER22752.1| DNA replication and repair protein RecF [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 360

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/342 (34%), Positives = 179/342 (52%), Gaps = 6/342 (1%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG + A  A + +  S
Sbjct: 9   LSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLKSAKLAYICKT-S 67

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
               +  A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL   M
Sbjct: 68  EDHCTVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLTSQM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           + IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   IE +
Sbjct: 125 EGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILAEDIRDDNWLKIIEEK 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA++   I   R++ +  +   I E   +  FP   LS+ G ++ K       +      
Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQKILDGEENIVSFITA 242

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA       
Sbjct: 243 ELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIK 302

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            T  APILLLDE+  HLD+ +R  L    T +  Q+++T TD
Sbjct: 303 LTKIAPILLLDEVFVHLDDKRRQYLIEFFTCLNMQLWVTATD 344


>gi|254419522|ref|ZP_05033246.1| RecF/RecN/SMC N terminal domain, putative [Brevundimonas sp. BAL3]
 gi|196185699|gb|EDX80675.1| RecF/RecN/SMC N terminal domain, putative [Brevundimonas sp. BAL3]
          Length = 377

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 133/382 (34%), Positives = 201/382 (52%), Gaps = 31/382 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +++FR+YAS RL   +   +  G NG GKTN+LEAIS L+PG+G R A+ A++ R
Sbjct: 2   ITSLTLTDFRSYASARLELASGPVVLHGPNGAGKTNLLEAISLLTPGKGLRGATAAEMGR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK------HL 120
                         G      + +  ETR    V+       ++R+  E  +      +L
Sbjct: 62  -------REPGEAVGRAWAVMVELDDETRLGTGVQTAGAARRIVRIDGETAQPGRLLDYL 114

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--- 177
           R  W  P  DR+FS    ER +F DR+VFA DP H   +  +E+ +R R RLL +     
Sbjct: 115 RPVWATPEQDRLFSDARAERLKFFDRLVFAADPDHAAAVSAYEKALRERLRLLNDAQDGR 174

Query: 178 -FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--- 233
             D  W  ++EA++ E G +  +ARV  ++AL + I +  +   FP   L L G  +   
Sbjct: 175 EADPVWLDALEARLGEAGARAALARVAALHALQAAI-DARRDRPFPQADLGLDGPAEQMA 233

Query: 234 ---GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
               + D+   A++E  AK     R  D  + R+L GPHR+DL   + +K    A GS+G
Sbjct: 234 EAGAEEDEIAAAIREGLAK----ARARDGAAGRSLFGPHRTDLTALHREKNRPAAEGSSG 289

Query: 291 EQKVVLVGIFLAH-ARLISNTTGFA--PILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           EQK +++ + LA  +RL  +    A  P+LLLDE  AHLDE +R ALF  +  +  Q FM
Sbjct: 290 EQKALVLNLILAQISRLAHHDAAGAARPVLLLDEAPAHLDEARRAALFDEIVALDLQAFM 349

Query: 348 TGTDKSVFDSLNETAKFMRISN 369
           TGT++S+F  L+  A+F+R++ 
Sbjct: 350 TGTERSLFAGLDGRAQFVRVAG 371


>gi|330994266|ref|ZP_08318194.1| DNA replication and repair protein recF [Gluconacetobacter sp.
           SXCC-1]
 gi|329758733|gb|EGG75249.1| DNA replication and repair protein recF [Gluconacetobacter sp.
           SXCC-1]
          Length = 374

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/363 (33%), Positives = 193/363 (53%), Gaps = 7/363 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +++FRNY  L        T+  G NG GKTN+LEA+S L+PGRG R A   ++ R
Sbjct: 4   VNRLVLTDFRNYRHLSWRPQRAVTVITGPNGSGKTNLLEALSLLAPGRGLRGARMDELPR 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDR---SVRCLQINDVVIRVVDELNKHLRIS 123
            G  + +   A V  + G   + + L T  D      R  +++   +R  D ++ +    
Sbjct: 64  HGE-ALWGIAADVADLPGPDGLPVSLATGADPLRPERRTFRVDGQTLRNRDGISGYFAAV 122

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P MDR+F   +  RRRFLDR+V A++P H R +   +R M  R R+L +   D  W 
Sbjct: 123 WLTPQMDRLFQEGAAGRRRFLDRLVLALEPGHAREVAAHDRAMLQRGRVLAQYGADPHWL 182

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242
           +++E  MA   V    AR +M+  L++     +  + FP  +L+L   +  +   +   A
Sbjct: 183 AALERTMARHAVAATAARADMVARLNADGQALL--DGFPAARLALDCVIARRLAHEPALA 240

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++  A+ L   R +D     +  G HR+DL +            STG+QK +LVGI L+
Sbjct: 241 VEDWLAECLAGTRAVDRQRGGSRFGAHRADLHMADRLTDRPAGQSSTGQQKALLVGIILS 300

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HAR+++   G AP+LLLDE   HLD  +R+ALF  +  + + + +TGTD+  FD L ++A
Sbjct: 301 HARILTACRGQAPLLLLDEPLVHLDAARRDALFHAMGRMRTGVMLTGTDREQFDPLRQSA 360

Query: 363 KFM 365
           +F+
Sbjct: 361 EFV 363


>gi|300021543|ref|YP_003754154.1| SMC domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523364|gb|ADJ21833.1| SMC domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 455

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/337 (37%), Positives = 184/337 (54%), Gaps = 17/337 (5%)

Query: 47  ISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK----------LETRD 96
           +S  S GRG      +D +R+ +P+   +        G +D S+            E   
Sbjct: 111 LSSPSTGRGQDPGGVSDRSRVDTPAPNPSPQGGGEPFGFSDESLARNAQRGGGRAAERAP 170

Query: 97  DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
               R ++I+         L  +L I W+ P+MD +F+G   ERRRFLDR++   D  +R
Sbjct: 171 SERGRIVRIDGTAQSGSGVLADYLEIVWVTPAMDGLFTGPGSERRRFLDRLILCFDHGYR 230

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
                FER M  RNRLL +G  D S  S  E  MAE GV +  AR+E + A++ ++ +  
Sbjct: 231 TIAGRFERAMTSRNRLLADGVRDDSQLSGFERVMAETGVAVAAARLEAVAAMAQIVGKRR 290

Query: 217 QKEN---FPHIKLSLTGFLDGKFDQSFCALKEE--YAKKLFDGRKMDSMSRRTLIGPHRS 271
           +++    FP     L G ++    Q   A++ E  YA+ L   R+ D  + RTL GPHRS
Sbjct: 291 ERDPNSAFPWSSFRLEGSIEDSL-QRLSAVEAEDLYAQTLRQTRERDRAASRTLDGPHRS 349

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN-TTGFAPILLLDEISAHLDEDK 330
           DLIV++  K +   H STGEQK +L+G+ LAHA L++    G APILLLDEI+AHLD D+
Sbjct: 350 DLIVEHGPKGLAARHCSTGEQKALLLGLVLAHAELLTERQEGAAPILLLDEITAHLDADR 409

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
           R ALF  +  +G+Q +MTGTDK+ F++L   A+F  +
Sbjct: 410 RAALFDEILHLGAQAWMTGTDKNAFEALAGRARFWAV 446



 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 3/106 (2%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           +N + ++ L ++ FR+YA+  +  DA   + VG NG GKTN+LEA+S LSPG+G RR  +
Sbjct: 6   SNALWVERLQLTNFRSYAAANVATDAGPQVIVGANGSGKTNLLEALSLLSPGQGLRRVPF 65

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +D+ R G    F+  AR   + G  DI   L      +VR L  +D
Sbjct: 66  SDLVRSGGDGGFAVAARAHTLAGATDIGTGLRA---TTVRSLSGDD 108


>gi|302381120|ref|YP_003816943.1| SMC domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302191748|gb|ADK99319.1| SMC domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 381

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 193/383 (50%), Gaps = 29/383 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +++FR+YA+  L  +    +  G NG GKTN+LEA+S  +PG+G R A+  ++ R
Sbjct: 2   IRALTLTDFRSYAAATLSVETGPVVLHGPNGAGKTNLLEALSLFTPGKGLRAATAQEMGR 61

Query: 67  -----IGSPSFFS--TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
                 G  ++    T A  +G +      +++     R VR         R++D    +
Sbjct: 62  REPGETGGRAWAVALTLAGPDGDDVRLGTGVQVAGAGRRMVRIEGETAQPGRLLD----Y 117

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-- 177
           LR  W  P  DR+FS    ER +F DR+VFA DP H   +  +E+ +R R RLL +G   
Sbjct: 118 LRPVWATPEQDRLFSDARAERLKFFDRLVFAADPGHAAAVAGYEKALRERLRLLVDGAEG 177

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD-- 233
              D  W  ++E ++ E G +   AR   +  L + I    ++  FP   L L G  +  
Sbjct: 178 READPLWLDALEVRLGETGARAASARARALGVLQAAIDARAERP-FPQADLGLDGAAETA 236

Query: 234 ---GKFDQSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
              G  D++  A ++E  A+     R  D  + R+L GPHR+DL   + +K    A GS+
Sbjct: 237 AANGSDDEAIAAGIREGMARS----RARDGAAGRSLFGPHRTDLTALHREKNRPAAEGSS 292

Query: 290 GEQKVVLVGIFLAHARLISNTTG---FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           GEQK +++ + LA    +  T G     P+LLLDE  AHLD  +R ALF  +  +  Q F
Sbjct: 293 GEQKALVLNLILAQIGRLKATGGPTPAPPVLLLDEAPAHLDAGRRAALFDEIVALDLQAF 352

Query: 347 MTGTDKSVFDSLNETAKFMRISN 369
           MTGT+  +F+ L   A F+R+  
Sbjct: 353 MTGTEADLFEPLRGRAAFVRVEG 375


>gi|7019618|gb|AAB70169.2| RecF [Sinorhizobium meliloti]
          Length = 176

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 117/167 (70%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +S+FRNYA+L L  D +H +  G+NG GKTN++E +SFLSPGRG RRA+
Sbjct: 1   MPHKVFLTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R+G+P  FS FA V+GMEG  +I    +  ++   R L+IN    R VDEL  HL
Sbjct: 61  YADVARVGAPDGFSVFAAVDGMEGSVEIGTGTQGTEEGQSRRLRINGTAARTVDELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  +F+R MR
Sbjct: 121 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMR 167


>gi|114326984|ref|YP_744141.1| recombination protein F [Granulibacter bethesdensis CGDNIH1]
 gi|114315158|gb|ABI61218.1| DNA replication and repair protein recF [Granulibacter bethesdensis
           CGDNIH1]
          Length = 373

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 184/354 (51%), Gaps = 7/354 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L ++ FRNYA+L           VG NG GKTN+LEAIS LSPGRG R A    + R
Sbjct: 8   IRTLTLTRFRNYAALAWSPPPGLVGVVGPNGSGKTNLLEAISLLSPGRGLRNARTDQLAR 67

Query: 67  IG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G      ++  AR+    G  +++  +    +R  R ++I+  +IR   EL  H+   W
Sbjct: 68  QGEGGDGSWAVHARILSPTGPVELATGVLPGTER--RQVRIDGDIIRGQAELGAHITTVW 125

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P MDR+F      RRRFLDR+V+ ++P H R +      +  R RLL     D +W +
Sbjct: 126 LTPQMDRLFQEGPAGRRRFLDRLVYGLEPAHAREVAAQAASLTERARLLAM-RADPAWLA 184

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E  +A     +  +R+  +  L+ ++++      FP  +L L   +  +  +      
Sbjct: 185 AVEDSIARHATAVTASRLAYVTRLNDVLVQG-GAGGFPPARLDLNCAIATRLSRHPAVEV 243

Query: 245 EEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           E++ +  L D R+ D  S    IG HRSDL++       + +  STG+QK +L+G+ L H
Sbjct: 244 EDWLRAALRDSRETDGESGTQGIGAHRSDLLMKDAATGRSASIASTGQQKALLIGVTLGH 303

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           A L+    G AP++LLDE   HLD ++R  L   +  +G Q F+T TD+  FD+
Sbjct: 304 AVLLKAVRGRAPVMLLDEPMTHLDAERRRLLLTALRGLGGQGFLTATDRDAFDA 357


>gi|83944866|ref|ZP_00957232.1| recF protein [Oceanicaulis alexandrii HTCC2633]
 gi|83851648|gb|EAP89503.1| recF protein [Oceanicaulis alexandrii HTCC2633]
          Length = 388

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 196/381 (51%), Gaps = 14/381 (3%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           T    +  L ++ FRNYA L L  DA+     G+NG GKTN++EA+SFL PGRG R A+ 
Sbjct: 8   TGGPAVTRLKLTGFRNYARLDLALDARPVALFGENGAGKTNLVEAVSFLGPGRGLR-AAG 66

Query: 62  ADVTR----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD  R     G    ++ +A     EG   ++   + ++    R     D       EL 
Sbjct: 67  ADAVRRRTDQGVDPLWAVYAEAMTPEGPVSLATGADPQN--PTRRRTKLDGAAATQTELA 124

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-- 175
           + + + WL P  DR+++G   +R RF DR+V A  P H      +E+ M+ R RLL    
Sbjct: 125 RLIPMLWLTPREDRLWAGPRADRLRFFDRLVLAAAPDHASSASAYEKSMKERQRLLDRVA 184

Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
             G  D  W +++EA+MA  GV +  AR++ +  L   I +   +  FP   L+L G ++
Sbjct: 185 EGGRADPDWLNALEAEMAASGVALAAARLDALARLQDEI-DTRPESQFPKADLALDGAVE 243

Query: 234 GKFDQSFCALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
            K  +   A + E  +A +L   R  D  + R L GPHR++L   +  K+   +  STGE
Sbjct: 244 AKLAEGLKAGEAEDWFADELQRVRPRDGAAGRALTGPHRTELDARHRAKSQPASDCSTGE 303

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           QK +++G+ LA A  I   +G  P+L+ DE  AHLD  +R+ L   V D+G Q FMTG +
Sbjct: 304 QKSMVLGLALAQAAAIRRLSGRGPVLIFDEACAHLDAARRDGLAETVLDLGVQAFMTGVE 363

Query: 352 KSVFDSLNETAKFMRISNHQA 372
             +F++    A+ + + +  A
Sbjct: 364 PVLFEAFGTGAQRVEVRDGSA 384


>gi|315497054|ref|YP_004085858.1| DNA replication and repair protein recf [Asticcacaulis excentricus
           CB 48]
 gi|315415066|gb|ADU11707.1| DNA replication and repair protein RecF [Asticcacaulis excentricus
           CB 48]
          Length = 374

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/376 (36%), Positives = 201/376 (53%), Gaps = 17/376 (4%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + +I  L++++FR+Y  L +    +     G NG GKTN LEAIS L+PGRG R A+ +D
Sbjct: 2   KTRIHALSLTDFRSYDRLDVDLSGRSLYLFGPNGAGKTNFLEAISVLNPGRGLRGAAVSD 61

Query: 64  VTR--IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVDELNKH 119
           + R         +    VE      DI I   + D RS+  R ++I+   +     L  H
Sbjct: 62  LGRRLPQEAKGRAWGVSVELKSAEDDIRIGTGS-DPRSLEKRLVRIDQQTV-PAGRLLDH 119

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           +R+ WL P+ DRIF     ER RF DR+VFA  P H   +  +E+ +R R +LL +G  D
Sbjct: 120 IRLVWLTPAQDRIFLEARAERLRFFDRLVFAATPSHATTVSAYEKALRERLKLLVQGPAD 179

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFL-DGKFD 237
           + W  ++E ++AE G ++  AR     ALS L  E    E+ FP   L L     D +  
Sbjct: 180 AVWLDALEERLAEAGSEMIGARR---AALSDLQAEIEAHESAFPKADLGLINEASDARER 236

Query: 238 QSF-CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           ++   AL+E +A+        DS + R+L GPHR+DL V + +K    A  STGEQK ++
Sbjct: 237 ETLNTALREGFARAR----ARDSAAGRSLFGPHRTDLSVFHREKDRPAADCSTGEQKALV 292

Query: 297 VGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           + + LA  +RL    +   P++LLDE++AHLD  +R ALF     +G Q   TGTD+S+F
Sbjct: 293 LNLILAQGSRLSRVKSAPNPVVLLDEVAAHLDPIRRAALFDETDRLGLQTLFTGTDESLF 352

Query: 356 DSLNETAKFMRISNHQ 371
           D L   A  +R+   Q
Sbjct: 353 DGLAGRALGVRVEGGQ 368


>gi|326402805|ref|YP_004282886.1| DNA replication and repair protein RecF [Acidiphilium multivorum
           AIU301]
 gi|325049666|dbj|BAJ80004.1| DNA replication and repair protein RecF [Acidiphilium multivorum
           AIU301]
          Length = 379

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 186/362 (51%), Gaps = 8/362 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L +++FR+YA L            G NG GKTN+LEA+S L+PGRG R A  A++
Sbjct: 14  LRIESLRLTDFRSYARLDWQPGGMVVALAGPNGAGKTNLLEAVSLLAPGRGLRGARLAEL 73

Query: 65  TR--IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R   G+   ++  AR++G EG   I   +E       R L   D        +      
Sbjct: 74  ARRAPGASGGWAVAARIDGPEGRFAIGTGIEAGQGERRRLLL--DGEPAAAARVAARFSC 131

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P MDR+F+  +  RRRFLDR+V A++P H   +  FE     RNRL+  G +D  W
Sbjct: 132 LWLTPQMDRLFTEGASARRRFLDRLVLALEPGHASEVAAFEAASANRNRLIEAGGYDPLW 191

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            ++IE  MA     +  AR+ +I    + ++     + FP  +LSL   +  +       
Sbjct: 192 LATIEDSMARHAAALTAARLHVIE-RLNALLAAGAADPFPAARLSLDCPIGAELAHRPAL 250

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             EE+ +  +   + + ++    + P R+DL +++    +  A  STG+Q+ +LV I LA
Sbjct: 251 AVEEWLRGRYAATRAEPVA---ALSPQRADLGLEHASSGLAAALASTGQQRAMLVAIVLA 307

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA L++ + G AP+LLLDE   HLD   R+AL   +   G+Q+F T T++    +L + A
Sbjct: 308 HAALVAISRGAAPVLLLDEPFVHLDAAHRSALGEALHRGGAQVFCTATERDQLAALGDAA 367

Query: 363 KF 364
            +
Sbjct: 368 IW 369


>gi|148259598|ref|YP_001233725.1| recombination protein F [Acidiphilium cryptum JF-5]
 gi|146401279|gb|ABQ29806.1| SMC domain protein [Acidiphilium cryptum JF-5]
          Length = 379

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 117/362 (32%), Positives = 186/362 (51%), Gaps = 8/362 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L +++FR+YA L            G NG GKTN+LEA+S L+PGRG R A  A++
Sbjct: 14  LRIESLRLTDFRSYARLDWQPGGMVVALAGPNGAGKTNLLEAVSLLAPGRGLRGARLAEL 73

Query: 65  TR--IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R   G+   ++  AR++G EG   I   +E       R L   D        +      
Sbjct: 74  ARRAPGASGGWAVAARIDGPEGRFAIGTGIEAGQGERRRLLL--DGEPAAAARVAARFSC 131

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P MDR+F+  +  RRRFLDR+V A++P H   +  FE     RNRL+  G +D  W
Sbjct: 132 LWLTPQMDRLFTEGASARRRFLDRLVLALEPGHASEVAAFEAASANRNRLIEAGGYDPLW 191

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            ++IE  MA     +  AR+ +I    + ++     + FP  +LSL   +  +       
Sbjct: 192 LATIEDSMARHAAALTAARLHVIE-RLNALLAAGAADPFPAARLSLDCPIGAELAHRPAL 250

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             EE+ +  +   + + ++    + P R+DL +++    +  A  STG+Q+ +LV I LA
Sbjct: 251 AVEEWLRGRYAATRAEPVA---ALSPQRADLGLEHASSGLAAALASTGQQRAMLVAIVLA 307

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA L++ + G AP+LLLDE   HLD   R+AL   +   G+Q+F T T++    +L + A
Sbjct: 308 HAALVAISRGAAPVLLLDEPFVHLDAAHRSALGEALHRGGAQVFCTATERDQLAALGDAA 367

Query: 363 KF 364
            +
Sbjct: 368 IW 369


>gi|58038494|ref|YP_190458.1| recombination protein F [Gluconobacter oxydans 621H]
 gi|58000908|gb|AAW59802.1| DNA replication and repair protein RecF [Gluconobacter oxydans
           621H]
          Length = 367

 Score =  179 bits (455), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 188/369 (50%), Gaps = 12/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +++FRNY       +A   +  G+NG GKTN+LEA+S L+PGRG R A+   +
Sbjct: 1   MKLTRLALTDFRNYTHTVWTPEASILVLTGENGSGKTNLLEAVSLLAPGRGLRGAALPAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIRVVDELNKHLR 121
            R G+  +        G++       ++ T  D   +  R  +++   IR    + +   
Sbjct: 61  CRQGAERWGVAATLQSGLD-----EFRIGTGSDLSEKQRRTFRLDGENIRSQALIGQRFS 115

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
             WL P MDR+F   S  RRRFLDR+V A+ P H R++   +R +  RNR+L+E   ++ 
Sbjct: 116 CVWLTPQMDRLFQEGSSGRRRFLDRLVMALSPDHGRQIAAHDRSVVTRNRVLSERPNEAE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           W +SIE  +A   V  + AR+ +I ++++   E    + F    L L   +  +      
Sbjct: 176 WLTSIEDSIARHAVAASAARLALIESMNAHPFE---NDGFSASTLHLDCAISSRLTTQPA 232

Query: 242 ALKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              E++ +  L   R  D     T +G HR+D ++            S+G+QKV+L G  
Sbjct: 233 LEVEDWIRNSLRQARTEDRQRSTTSVGAHRADFMLSDTATGRPAELSSSGQQKVMLTGTI 292

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+HARL++   G+AP +LLDE   HLDE +R+AL   +  + + + +TGTD   F  +  
Sbjct: 293 LSHARLMTQERGYAPAILLDEPLLHLDEMRRHALLDSLEGLRAPVLITGTDAEAFAPIAG 352

Query: 361 TAKFMRISN 369
            A+F  I N
Sbjct: 353 RAQFFSIRN 361


>gi|15603908|ref|NP_220423.1| recombination protein F [Rickettsia prowazekii str. Madrid E]
 gi|7388064|sp|Q9ZEB6|RECF_RICPR RecName: Full=DNA replication and repair protein recF
 gi|3860599|emb|CAA14500.1| RECF PROTEIN (recF) [Rickettsia prowazekii]
 gi|292571623|gb|ADE29538.1| DNA replication and repair protein RecF [Rickettsia prowazekii
           Rp22]
          Length = 360

 Score =  179 bits (454), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/358 (32%), Positives = 184/358 (51%), Gaps = 6/358 (1%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  +RN+ +L L  D    I  G+NG GKTNILEAIS   PGRG R +   D+ +  S
Sbjct: 9   LTLENYRNFKNLELKTDNTPIILTGENGSGKTNILEAISLFYPGRGLRSSKLTDICKT-S 67

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             +      ++   GLA++S  ++   +R  R  + N   I   +EL+K   + WL P M
Sbjct: 68  EDYCKVKTLLQSKLGLAELSTHIKRSSNR--RITEYNASKI-ANNELSKFTNMVWLTPQM 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           + IF+  S +RR+FLDR+V+  D +H   +  +E  M  RN++L E   D++W   IE +
Sbjct: 125 EGIFTSSSTDRRKFLDRIVYNFDTKHAALLNKYEYYMHERNKILAEDIRDNNWLKIIEEK 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA++   I   R++ I  +   I + ++ E FP   LS+ G ++ K       +      
Sbjct: 185 MADISNNIANNRLKTIRFIQQAIDD-IENE-FPKADLSIDGIIEQKILNVEGDIVNFIIT 242

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA       
Sbjct: 243 ELYKTRSKDKLLGRTSFGIHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEINSTIK 302

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
            T   PILLLDEI  HLD+ +R  L      +  Q+++T TD    ++    A+ +++
Sbjct: 303 LTKITPILLLDEIFVHLDDKRRQYLMGFFNALNIQLWVTATDLDGIENFANKAQLIKL 360


>gi|6580764|gb|AAF18270.1| DNA/ATP binding protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 318

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 108/316 (34%), Positives = 169/316 (53%), Gaps = 18/316 (5%)

Query: 63  DVTRIGSPSFFSTFARVEGMEG---LADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           D+ R      F+  A++  +E    +  ++I +      S R +++N V     + L++ 
Sbjct: 1   DLVRREGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTTSA-NALSEW 59

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYF 178
           L I WL P+MDR++   +  RRRFLDR+   I P H R    +E  MR RN+LL+ E  +
Sbjct: 60  LAILWLTPAMDRLYQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGY 119

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGK- 235
           D  W   +E  MAE    I +AR ++++ LS    E  ++E+  F    L+L   +D + 
Sbjct: 120 DPLWLDGLEQIMAEQATHILLARRQLVDLLSE---EIAKQEDGLFAKADLALEEGVDSRD 176

Query: 236 ----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
                 +    L +   +K    R  D+   RTL G HR+DL V +  KA+  A  STGE
Sbjct: 177 LVTHNSEEIMPLLQNIWQK---SRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQSSTGE 233

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           QK +L+G+ LA   LI+   G  P+LLLDE++AHLD  +R  LF I+   G Q++MTGT+
Sbjct: 234 QKALLLGLVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTE 293

Query: 352 KSVFDSLNETAKFMRI 367
            S+F++  E A + ++
Sbjct: 294 PSLFETAGEAACYFQL 309


>gi|329847541|ref|ZP_08262569.1| DNA replication and repair protein recF [Asticcacaulis biprosthecum
           C19]
 gi|328842604|gb|EGF92173.1| DNA replication and repair protein recF [Asticcacaulis biprosthecum
           C19]
          Length = 290

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 105/281 (37%), Positives = 153/281 (54%), Gaps = 20/281 (7%)

Query: 97  DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
           DR+ R ++I+   +    +L  HLR+ WL P+ DR+F     +R +F DR+V+A +P H 
Sbjct: 22  DRAKRTVRIDQQAVPAA-QLLDHLRMIWLTPAQDRLFIEARNDRLKFFDRLVYAAEPGHA 80

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
             +  +E+ +R R +LLTEG  D +W + +E ++A  G ++  AR   + AL + I  + 
Sbjct: 81  AIVAAYEKALRERLKLLTEGPADETWLTVLEHKLAANGARMTEARQAAMQALQNEIDGH- 139

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHRSD 272
            +  FP   LSLTG +D            +    L +G    R  D  + R+L GPHR D
Sbjct: 140 -ESAFPKADLSLTGTID----------TADLTTALMNGFRHSRDRDGAAGRSLFGPHRMD 188

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           L V + DK    A  STGEQK +L+ I LA    +S    F P+LLLDE++AHLD  +R+
Sbjct: 189 LAVVHRDKTRPAADCSTGEQKALLLNIILAQGARLS---AFKPVLLLDEVAAHLDPLRRH 245

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           ALF     +G Q F TGTD S+FD L   A  +R+   Q L
Sbjct: 246 ALFDETHALGLQTFFTGTDLSLFDGLLGRALGVRVEAAQIL 286


>gi|88607598|ref|YP_505900.1| recombination protein F [Anaplasma phagocytophilum HZ]
 gi|88598661|gb|ABD44131.1| putative DNA replication and repair protein RecF [Anaplasma
           phagocytophilum HZ]
          Length = 371

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 178/363 (49%), Gaps = 6/363 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + +  FRNY+ + L  + +  + +G+NGVGKTNILEA+S LS G G R  S   +  
Sbjct: 9   VQVVKLVNFRNYSKVELESNGKSVVLLGENGVGKTNILEAVSLLSKGPGLRNVSADCMQN 68

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+   +     + G      + I  +  + RSV      D    +   L+K L I WLV
Sbjct: 69  SGTTIPWLVHYNIVGNGEFFSVDIT-KKNNKRSVTI----DEKASLYSTLHKILCILWLV 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P +D I      ER RF DRMV   D  +   M+ +E+  R R ++L E   +  W SS+
Sbjct: 124 PQLDHILLKAPTERLRFFDRMVHIFDKDYSLHMVKYEKAKRDRKKILQESPHNHHWLSSL 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E  M+  GV I   R  ++  L + + E+  +  F    + L   +    D    A+ + 
Sbjct: 184 EEIMSASGVHIAKIRQHVLETLHATLAEHSSRSTFFKFIIRLESKVFELLDNPDKAV-DA 242

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA++L   R +D+  + T  G H  +  V    K +  +  STGEQK++L+ + L  A  
Sbjct: 243 YAERLRSNRNIDAARQCTTFGVHNDNFQVFNEKKDLVASSCSTGEQKILLLSLLLTAATA 302

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
                G API+LLD+I +HLD   R  L  I+  +G Q+++T  D+  F+   E  ++  
Sbjct: 303 KHKIDGQAPIMLLDDIMSHLDPQHRKELMSIIEHLGCQVWITDVDEKNFEGFRENFQYFH 362

Query: 367 ISN 369
           ++N
Sbjct: 363 VAN 365


>gi|218683066|ref|ZP_03530667.1| recombination protein F [Rhizobium etli CIAT 894]
          Length = 166

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 111/159 (69%)

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
           LI E  +   FP   L L+GF+DG+F +    L+++YA  L + R  D+ + RTL GPHR
Sbjct: 3   LIEETHESSPFPSASLQLSGFMDGQFSRPSVDLEDDYAAMLAESRYRDAGAGRTLDGPHR 62

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
           +DLIV + +KA+     STGEQK +LVG+ LAHARL+ N TG APILLLDEI+AHLDE++
Sbjct: 63  ADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGNLTGHAPILLLDEIAAHLDENR 122

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
           R ALF ++  +G Q FMTGTD+S+F +L + A+   +++
Sbjct: 123 RAALFDLIDGLGGQAFMTGTDRSMFSALGDRAQVFTVAD 161


>gi|68171576|ref|ZP_00544950.1| recF protein [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658291|ref|YP_506906.1| recombination protein F [Ehrlichia chaffeensis str. Arkansas]
 gi|67999002|gb|EAM85679.1| recF protein [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599748|gb|ABD45217.1| putative DNA replication and repair protein RecF [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 372

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 179/368 (48%), Gaps = 10/368 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  FRNY +L L   ++  + +G NG GKTNILEAIS LS G G R  +   +  
Sbjct: 9   INNLRLVNFRNYINLELDTSSKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVNTESMQN 68

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S S +S   ++    G+  I+I     + R++     N    +    L+K   I WL+
Sbjct: 69  SLSNSPWSVSYQMHTQNGIYPIAIS-RNHNKRAILISNKN----QSYTTLHKITSIIWLI 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P +D IF     ER RF DR+    D ++   +I + +  + R++LL     D+ W SS+
Sbjct: 124 PQLDHIFLKSQSERLRFFDRIAHIFDTKYAIHIIKYNKAKQERSKLLYNNSIDNFWLSSL 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E+ +AE G+ I   R  ++  L + + +  +   F    + +   +    DQ      E 
Sbjct: 184 ESIIAENGINIARIRFNVLQTLQNTLSQNSKSHAFFKAIIKIQSQVFNLLDQENSI--EL 241

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           Y + L + R  DS+S     G H  +  + + +K +   + STGEQK++L+ + L+    
Sbjct: 242 YKEHLKNNRSKDSLSNLVNFGVHNDNFQIFHSEKNLIANYCSTGEQKILLLSLILSSVFA 301

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNETAKF 364
             N  G  PILLLD++ +HLD   +  L  I+ DI  Q+++T  D  +  F    E  KF
Sbjct: 302 KQN-IGEYPILLLDDVMSHLDAYHQEKLLEIIRDIKCQVWLTDIDLTQQNFTKHKEYFKF 360

Query: 365 MRISNHQA 372
             ++N+ A
Sbjct: 361 FHVANNTA 368


>gi|73666678|ref|YP_302694.1| recombination protein F [Ehrlichia canis str. Jake]
 gi|72393819|gb|AAZ68096.1| RecF protein [Ehrlichia canis str. Jake]
          Length = 372

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 181/371 (48%), Gaps = 10/371 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  FRNY++L L   ++  + +G NG GKTNILEAIS LS G G R  +   +  
Sbjct: 9   INNLRLVNFRNYSNLELDTSSKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVNTESMQN 68

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S S +S   ++    G+  I I   +R+++    +  N     +   L+K + I+WL+
Sbjct: 69  STSDSPWSLSYQIHTQNGIYPIVI---SRNNKQRNIIISNKSQNYIT--LHKIISITWLI 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P +D IF     ER RF DR+    D ++   +I + +  + R+RLL     D+ W SS+
Sbjct: 124 PQLDHIFLKSQSERLRFFDRITHIFDTKYASYIIKYNKAKQERSRLLHNNSTDNFWLSSL 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E+ +AE G+ I   R  ++  L S + +      F    + +   +    DQ      E 
Sbjct: 184 ESIIAENGINIARTRFNVMQILQSSLSQNSHSNAFFKAVIKIQSQVFDLLDQEDSI--EL 241

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           Y + L   R  DS+S     G H  +  + + +K +   + STGEQK++L+ + L+    
Sbjct: 242 YKEHLKKNRAKDSLSNLVSFGVHNDNFQIFHLEKTLIANNCSTGEQKILLLSLILSSVIA 301

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNETAKF 364
             N  G  PILLLD++ +HLD   +  L   + +I  Q+++T  D  +  F    E  KF
Sbjct: 302 KQN-IGEYPILLLDDVMSHLDAFHQEKLIETIINIKCQVWLTDIDLTQQNFAKYREYFKF 360

Query: 365 MRISNHQALCI 375
             I N+ A+ +
Sbjct: 361 FHIINNTAILL 371


>gi|222475581|ref|YP_002563998.1| RECF protein (recF) [Anaplasma marginale str. Florida]
 gi|222419719|gb|ACM49742.1| RECF protein (recF) [Anaplasma marginale str. Florida]
          Length = 371

 Score =  149 bits (376), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 179/374 (47%), Gaps = 22/374 (5%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R  I+ + +  FRNY    L       + +G+NG GKTNILEAIS LS G G R  S A 
Sbjct: 6   RSCIQSIKLCNFRNYTRAELESHGHSVVLLGENGSGKTNILEAISLLSKGPGLRNVSAAC 65

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +    S + +S    V  + G A  S+ +   +++  R L I D    +   L+  L I 
Sbjct: 66  MQNRESSAPWSVHHAV--LSGNAQCSVSITKHENK--RRLLI-DEKAGLYSTLHNMLCIV 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL+P +D I      ER RF DR+V   D  +   ++ +E+  R R ++L E   D +W 
Sbjct: 121 WLMPQLDHILLKAPSERLRFFDRVVHIFDKDYSSHIVRYEKAKRDRRKILREAPQDVNWL 180

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCA 242
           +S+E  MA  GV I  AR+ + NAL  L       + N P +K ++        D +   
Sbjct: 181 TSLENVMAASGVCI--ARMRL-NALEILQKTMADNDINSPFLKFNI------HLDSAVFE 231

Query: 243 LKEE-------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           L E        Y ++L + R  D   + T  G H     +   DK +  ++ STGEQK++
Sbjct: 232 LLESQEHAVSRYMQQLGNSRMKDMHGQLTSFGIHNDHFQISNADKNLAASNCSTGEQKIL 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           L+ + L  A         API+LLD+I +HLD   +  L + + D+G Q ++T  D   F
Sbjct: 292 LLSLLLTAAVAKRKVHNQAPIMLLDDIMSHLDYTHKQELVQTIKDVGCQTWITDVDDRNF 351

Query: 356 DSLNETAKFMRISN 369
           + L      +RI++
Sbjct: 352 EGLERHFVRLRITD 365


>gi|56417217|ref|YP_154291.1| recombination protein F [Anaplasma marginale str. St. Maries]
 gi|56388449|gb|AAV87036.1| RECF protein [Anaplasma marginale str. St. Maries]
          Length = 371

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 178/374 (47%), Gaps = 22/374 (5%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R  I+ + +  FRNY    L       + +G+NG GKTNILEAIS LS G G R  S A 
Sbjct: 6   RSCIQSIKLCNFRNYTRAELESHGHSVVLLGENGSGKTNILEAISLLSKGPGLRNVSAAC 65

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +    S + +S    V  + G A  S+ +   +++  R L I D    +   L+  L I 
Sbjct: 66  MQNRESSAPWSVHHAV--LSGNAQCSVSITKHENK--RRLLI-DEKAGLYSTLHNMLCIV 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL+P +D I      ER RF DR+V   D  +   ++ +E+  R R ++L E   D +W 
Sbjct: 121 WLMPQLDHILLKAPSERLRFFDRVVHIFDKDYSSHIVRYEKAKRDRRKILREAPQDVNWL 180

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCA 242
           +S+E  MA  GV I  AR+ + NAL  L       + N P +K ++        D +   
Sbjct: 181 TSLENVMAASGVCI--ARMRL-NALEILQKTMADNDINSPFLKFNI------HLDSAVFE 231

Query: 243 LKEE-------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           L E        Y ++L + R  D   + T  G H     +   DK +  +  STGEQK++
Sbjct: 232 LLESQEHAVSRYMQQLGNSRMKDMHGQLTSFGIHNDHFQISNADKNLAASDCSTGEQKIL 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           L+ + L  A         API+LLD+I +HLD   +  L + + D+G Q ++T  D   F
Sbjct: 292 LLSLLLTAAVAKRKVHNQAPIMLLDDIMSHLDYTHKQELVQTIKDVGCQTWITDVDDRNF 351

Query: 356 DSLNETAKFMRISN 369
           + L      +RI++
Sbjct: 352 EGLERHFVRLRITD 365


>gi|255003571|ref|ZP_05278535.1| recombination protein F [Anaplasma marginale str. Puerto Rico]
 gi|255004698|ref|ZP_05279499.1| recombination protein F [Anaplasma marginale str. Virginia]
          Length = 371

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/374 (31%), Positives = 177/374 (47%), Gaps = 22/374 (5%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R  I+ + +  FRNY    L       + +G NG GKTNILEAIS LS G G R  S A 
Sbjct: 6   RSCIQSIKLCNFRNYTRAELESHGHSVVLLGANGSGKTNILEAISLLSKGPGLRNVSAAC 65

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +    S + +S    V  + G A  S+ +   +++  R L I D    +   L+  L I 
Sbjct: 66  MQNRESSAPWSVHHAV--LSGNAQCSVSITKHENK--RRLLI-DEKAGLYSTLHNMLCIV 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL+P +D I      ER RF DR+V   D  +   ++ +E+  R R ++L E   D +W 
Sbjct: 121 WLMPQLDHILLKAPSERLRFFDRVVHIFDKDYSSHIVRYEKAKRDRRKILREAPQDVNWL 180

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCA 242
           +S+E  MA  GV I  AR+ + NAL  L       + N P +K ++        D +   
Sbjct: 181 TSLENVMAASGVCI--ARMRL-NALEILQKTMADNDINSPFLKFNI------HLDSAVFE 231

Query: 243 LKEE-------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           L E        Y ++L + R  D   + T  G H     +   DK +  +  STGEQK++
Sbjct: 232 LLESQEHAVSRYMQQLGNSRMKDMHGQLTSFGIHNDHFQISNADKNLAASDCSTGEQKIL 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           L+ + L  A         API+LLD+I +HLD   +  L + + D+G Q ++T  D   F
Sbjct: 292 LLSLLLTAAVAKRKVHNQAPIMLLDDIMSHLDYTHKQELVQTIKDVGCQTWITDVDDRNF 351

Query: 356 DSLNETAKFMRISN 369
           + L      +RI++
Sbjct: 352 EGLERHFVRLRITD 365


>gi|58616769|ref|YP_195968.1| recombination protein F [Ehrlichia ruminantium str. Gardel]
 gi|58416381|emb|CAI27494.1| DNA replication and repair protein recF [Ehrlichia ruminantium str.
           Gardel]
          Length = 372

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 179/371 (48%), Gaps = 19/371 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  FRNY ++ L   ++  + +G NG GKTNILEAIS LS G G R  S   +  
Sbjct: 9   IQNLRLINFRNYLNIELDTSSKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVSMESMQN 68

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S   +S    +     +  I I  +  + RS+     N   I     L+K + + WL+
Sbjct: 69  SSSDLPWSVSYHIHNQNSIYPIVIA-KGNNKRSILISNKNHNYIT----LHKIISVVWLI 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P +D IF     ER +F DR+V   D  +   +I + +  + RN+LL     D+ W SS+
Sbjct: 124 PQLDHIFLKSQSERLKFFDRVVHIFDTNYTSYIIKYNKAKQDRNKLLRSNSVDNFWLSSL 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENF----PHIKLSLTGFLDGKFDQSFCA 242
           E+ MAE G+KI   R+ ++  L +++ +     +F      IK  +   LD   + S   
Sbjct: 184 ESIMAENGIKIAQIRLNVVQILQNVLSKNNLSNSFFKAVIEIKSQVFPLLDN--ENSI-- 239

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E Y + L   R  DS +     G H  ++ + + +K +     STGEQK++L+ + L+
Sbjct: 240 --ENYKENLQKSRARDSSTNLVNFGVHNDNVQIFHLEKNLIANCCSTGEQKILLLSLVLS 297

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNE 360
            + L    TG  PILLLD+I +HLD   +  L   +  I  Q+++T  D  +  F    E
Sbjct: 298 -SVLAKQDTGEYPILLLDDIMSHLDVYHQEKLLETIVSIKCQVWITDIDLKQQNFTKYKE 356

Query: 361 TAKFMRIS-NH 370
             KF  +  NH
Sbjct: 357 HFKFFHVGDNH 367


>gi|218458186|ref|ZP_03498277.1| recombination protein F [Rhizobium etli Kim 5]
          Length = 152

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/146 (43%), Positives = 94/146 (64%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA++ L  D +H +  G+NG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVCLSRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +ET ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGTAGGFSIFAALDGMEGEVEIGTGVETGEETTTRRLRINGTAAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDR 146
           R+ WL P   R      +   RFLDR
Sbjct: 121 RLLWLTPGDGRALYRRLVRPPRFLDR 146


>gi|148284348|ref|YP_001248438.1| recombination protein F [Orientia tsutsugamushi str. Boryong]
 gi|146739787|emb|CAM79662.1| DNA replication and repair protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 383

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 168/361 (46%), Gaps = 14/361 (3%)

Query: 2   TNRI-KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           TN I +I  L +  +RN   L +       + +G NG GKTN+LE+IS  +PGRG R A 
Sbjct: 9   TNSICRITKLVLHNYRNLTELTVSPKCDKILIIGKNGSGKTNLLESISLFAPGRGLRGAK 68

Query: 61  YADVTRIGS----------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           Y+D+ R  +           ++    A +     +  + I      + + R +++ND  I
Sbjct: 69  YSDILRKEANSSSSSSNCHNTYSQWIAEITLQTAINIVKISTNYYQNTTKRNIKLNDNTI 128

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
               +L + + +  + P M+ +F   + +RR+ LDR+V+  D +H  R+  +E  +R R 
Sbjct: 129 -TSHKLLELVNMICITPQMESVFLNGATQRRKLLDRIVYLFDYKHAERVNKYEYYLRERM 187

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
            LL      + W + IE  +A + V+I   R   I  L   + E      FP +KL +  
Sbjct: 188 ILLRSNSSQTRWINVIENCLASISVEIASCRYNAIKQLQLYLDEI--DAPFPKVKLDIQC 245

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            +     Q    L E    +  + R +D  S ++  G HRSD  V +  K       STG
Sbjct: 246 QIAELCLQQSPKLLELINSRFCNSRTIDGNSGKSNFGVHRSDFKVIHSVKNQLAQFCSTG 305

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           EQK +L+ + +A            PILLLDE+  HLD +KR  L + +T    Q +++ T
Sbjct: 306 EQKALLISLLIAQMLQSRKNYNRFPILLLDELFIHLDIEKRQYLAKFLTQFPVQCWISST 365

Query: 351 D 351
           +
Sbjct: 366 E 366


>gi|291165886|gb|EFE27933.1| DNA replication and repair protein RecF [Filifactor alocis ATCC
           35896]
          Length = 355

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/353 (32%), Positives = 182/353 (51%), Gaps = 23/353 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L +  FRNY  L L+F     +FVG NG GKTN+LEAIS  S GR FR     D+
Sbjct: 1   MKIHQLTLKNFRNYEQLELLFKEGANVFVGQNGQGKTNVLEAISLFSVGRSFRTVRDLDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +  +  A VE + G   I +KL     ++V+   IN V I  + +L   L I  
Sbjct: 61  VAFGQDA-ATVSAIVENLHGRYTIDMKLGKSIKKAVK---INSVPIEKLQDLFGVLNIVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   ++      ERR FLDR +  + PR+ R + ++ +++  RN LL +   D     
Sbjct: 117 FSPDDLKLVKDGPKERRLFLDREISQLKPRYYRILSEYYKVLNQRNTLLKQE-VDEVLLE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFCAL 243
               Q+A+ G +I+  R E I      I E+ Q+    H K+S     L+ +++ +  A+
Sbjct: 176 IYTQQIAKSGFQIHKMREEFIEH----IREFAQE---IHSKISSKKEVLEIEYEPNVYAI 228

Query: 244 -KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAH-GSTGEQKVVLVGI 299
            +EEY + L DG++ D + + +  G H+ D  L+++  D    I H GS G+++   + +
Sbjct: 229 SEEEYFRYLMDGKEHDFIRKHSTRGIHKDDVALVINEMD----IRHFGSQGQKRSAAISL 284

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            L+  ++I   TG  PI+LLD+I + LD  ++  L   VT+  +Q+F+T  +K
Sbjct: 285 KLSEIQMIYQDTGEYPIVLLDDIFSELDYSRQRMLLDYVTN--TQVFVTTAEK 335


>gi|189183858|ref|YP_001937643.1| recombination protein F [Orientia tsutsugamushi str. Ikeda]
 gi|189180629|dbj|BAG40409.1| RecF protein [Orientia tsutsugamushi str. Ikeda]
          Length = 378

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 171/361 (47%), Gaps = 14/361 (3%)

Query: 2   TNRI-KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           TN I +I  L +  +RN   L +       + +G NG GKTN+LE+IS  +PGRG R A 
Sbjct: 4   TNSICRITKLVLHNYRNLTELIVSPQCDKILIIGKNGSGKTNLLESISLFAPGRGLRGAK 63

Query: 61  YADVTR----IGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           Y+D+ R    + S S      +    A +     +  + I      + + R +++ND  I
Sbjct: 64  YSDILRKEANLSSNSSNCHNAYSQWIAEITLQTAINIVKISTNYYQNTTKRNIKLNDNTI 123

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
               +L + + +  + P M+ +F   + +RR+ LDR+V+  D +H  R+  +E  +R R 
Sbjct: 124 -TSHKLLELVNMICITPQMESVFLNGATQRRKLLDRIVYLFDYKHAERVNKYEYYLRERM 182

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
            LL      + W + IE  +A + ++I   R   I  L  L ++ +    FP +KL +  
Sbjct: 183 ILLRSNSSQTRWINVIENCLASISLEIASCRYNAIKQL-QLYLDEIDAP-FPKVKLDIQC 240

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            +   + Q    L E    +  + R +D  S ++  G HRSD  V +  K       STG
Sbjct: 241 QIAELYLQQSPKLLELINSRFCNSRTIDCNSGKSNFGVHRSDFKVIHSVKNQLAQFCSTG 300

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           EQK +L+ + +A            PILLLDE+  HLD +KR  L + +     Q +++ T
Sbjct: 301 EQKALLISLLIAQMLQSRKNYNRFPILLLDELFIHLDIEKRQYLAKFLAQFPVQCWISST 360

Query: 351 D 351
           +
Sbjct: 361 E 361


>gi|57238782|ref|YP_179918.1| recombination protein F [Ehrlichia ruminantium str. Welgevonden]
 gi|58578707|ref|YP_196919.1| recombination protein F [Ehrlichia ruminantium str. Welgevonden]
 gi|57160861|emb|CAH57763.1| putative DNA replication and repair protein RecF [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417333|emb|CAI26537.1| DNA replication and repair protein recF [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 372

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 110/367 (29%), Positives = 177/367 (48%), Gaps = 18/367 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  FRNY ++ L    +  + +G NG GKTNILEAIS LS G G R  +   +  
Sbjct: 9   IQNLRLINFRNYLNIELDTSGKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVNMESMQN 68

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S   +S    +     +  I I  +  + RS+     +   I     L+K + + WL+
Sbjct: 69  SSSDLPWSISYHIHNQNSIYPIVIA-KGNNKRSILISNKSHNYIT----LHKIISVVWLI 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P +D IF     ER +F DR+V   D  +   +I + +  + RN+LL     D+ W SS+
Sbjct: 124 PQLDHIFLKSQSERLKFFDRVVHIFDTNYTSYIIKYNKAKQDRNKLLRSNSVDNFWLSSL 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENF----PHIKLSLTGFLDGKFDQSFCA 242
           E+ MAE G+KI   R+ ++  L +++ +     +F      IK  +   LD   + S   
Sbjct: 184 ESIMAENGIKIAQIRLNVVQILQNVLSKNNLSNSFFKAVIEIKSQVFPLLDN--ENSI-- 239

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E Y + L   R  DS +     G H  ++ + + +K +  +  STGEQK++L+ + L+
Sbjct: 240 --ENYKENLQKSRARDSSTNLVNFGVHNDNVQIFHLEKNLIASCCSTGEQKILLLSLVLS 297

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNE 360
            + L    TG  PILLLD+I +HLD   +  L   +  I  Q+++T  D  +  F    E
Sbjct: 298 -SVLAKQDTGEYPILLLDDIMSHLDVYHQEKLLETIVSIKCQVWITDIDLKQQNFTKYKE 356

Query: 361 TAKFMRI 367
             KF  +
Sbjct: 357 HFKFFHV 363


>gi|58696694|ref|ZP_00372244.1| recF protein [Wolbachia endosymbiont of Drosophila simulans]
 gi|58698389|ref|ZP_00373302.1| recF protein [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630989|ref|YP_002727780.1| recombination protein F [Wolbachia sp. wRi]
 gi|58535102|gb|EAL59188.1| recF protein [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58537136|gb|EAL60246.1| recF protein [Wolbachia endosymbiont of Drosophila simulans]
 gi|225592970|gb|ACN95989.1| recombination protein F [Wolbachia sp. wRi]
          Length = 365

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 177/371 (47%), Gaps = 15/371 (4%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M     IK L +  FR++++  L  D    +  G NG+GKTNILEAIS L+   G ++A 
Sbjct: 1   MATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAK 60

Query: 61  YADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +++  R  +  +   +    GM+     SI +    D+  + +QI+         L K 
Sbjct: 61  ASEIQNRFSNEDWVVHYDFFNGMDF---NSIGIAKSFDK--KLIQIDGKTQSSYSSLYKI 115

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             + WL+P MD +      +R +FLDR+V   +  +    +   +  R R++LL E   D
Sbjct: 116 SNVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +W SS+E  MA   V I   R  ++  L   I  +   E FP   L  +  L      +
Sbjct: 176 KNWLSSLENIMAVNAVSILRMRSSVLKTLQDTIDNH-SGELFPKASLKFSSQL------T 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVG 298
                E +  +L + R+ DS++ R   G H  +  V +C K  + I   STGEQK++L+ 
Sbjct: 229 LDDTAEYFQNRLKENREKDSLTGRVTFGVHNDNFRV-FCQKRNVPINLCSTGEQKLLLLS 287

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           I L+  +        AP+LLLD+I +HLD+  R AL   V  I  Q ++T  ++  F+S 
Sbjct: 288 IILSSVKARCIHYNKAPLLLLDDIMSHLDKHYRKALIEEVLSIQCQTWITDVNQDNFNSY 347

Query: 359 NETAKFMRISN 369
             + KF  +SN
Sbjct: 348 LYSFKFFELSN 358


>gi|254995385|ref|ZP_05277575.1| recombination protein F [Anaplasma marginale str. Mississippi]
          Length = 339

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 168/347 (48%), Gaps = 22/347 (6%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
           + +G+NG GKTNILEAIS LS G G R  S A +    S + +S    V  + G A  S+
Sbjct: 1   MLLGENGSGKTNILEAISLLSKGPGLRNVSAACMQNRESSAPWSVHHAV--LSGNAQCSV 58

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
            +   +++  R L I D    +   L+  L I WL+P +D I      ER RF DR+V  
Sbjct: 59  SITKHENK--RRLLI-DEKAGLYSTLHNMLCIVWLMPQLDHILLKAPSERLRFFDRVVHI 115

Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
            D  +   ++ +E+  R R ++L E   D +W +S+E  MA  GV   IAR+ + NAL  
Sbjct: 116 FDKDYSSHIVRYEKAKRDRRKILREAPQDVNWLTSLENVMAASGV--CIARMRL-NALEI 172

Query: 211 LIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEE-------YAKKLFDGRKMDSMSR 262
           L       + N P +K ++        D +   L E        Y ++L + R  D   +
Sbjct: 173 LQKTMADNDINSPFLKFNI------HLDSAVFELLESQEHAVSRYMQQLGNSRMKDMHGQ 226

Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
            T  G H     +   DK +  +  STGEQK++L+ + L  A         API+LLD+I
Sbjct: 227 LTSFGIHNDHFQISNADKNLAASDCSTGEQKILLLSLLLTAAVAKRKVHNQAPIMLLDDI 286

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
            +HLD   +  L + + D+G Q ++T  D   F+ L      +RI++
Sbjct: 287 MSHLDYTHKQELVQTIKDVGCQTWITDVDDRNFEGLERHFVRLRITD 333


>gi|42521081|ref|NP_966996.1| recombination protein F [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410822|gb|AAS14930.1| recF protein [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 365

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 176/371 (47%), Gaps = 15/371 (4%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M     IK L +  FR++++  L  D    +  G NG+GKTNILEAIS L+   G ++A 
Sbjct: 1   MATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAK 60

Query: 61  YADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +++  R  +  +   +    GM+     SI +    D+  + +QI+         L K 
Sbjct: 61  ASEIQNRFSNEDWVVHYDFFNGMDF---NSIGIAKSFDK--KLIQIDGKTQSSYSSLYKI 115

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             + WL+P MD +      +R +FLDR+V   +  +    +   +  R R++LL E   D
Sbjct: 116 SNVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +W SS+E  MA   V I   R  ++  L   I  +   E FP   L  +  L      +
Sbjct: 176 ENWLSSLENIMAVNAVSILRMRSSVLKTLQDTIDNH-SSEFFPKASLKFSSQL------T 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVG 298
                E +   L + R+ DS++ R   G H  +  V +C K  + I   STGEQK++L+ 
Sbjct: 229 LDDTAEYFQNLLKENREKDSLTGRVTFGVHNDNFRV-FCQKRNVPINLCSTGEQKLLLLS 287

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           I L+  +        AP+LLLD+I +HLD+  R AL   V  I  Q ++T  ++  F+S 
Sbjct: 288 IILSSVKARCIHYNKAPLLLLDDIMSHLDKHYRKALMEEVLSIQCQTWITDVNQDNFNSY 347

Query: 359 NETAKFMRISN 369
             + KF  +SN
Sbjct: 348 LYSFKFFELSN 358


>gi|269958391|ref|YP_003328178.1| recombination protein F [Anaplasma centrale str. Israel]
 gi|269848220|gb|ACZ48864.1| recombination protein F [Anaplasma centrale str. Israel]
          Length = 371

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 175/363 (48%), Gaps = 14/363 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  FRNY    L       + +G NG GKTNILEAIS LS G G R  S   +  
Sbjct: 9   IQSIKLCNFRNYTRAELETHGCSVVLLGKNGSGKTNILEAISLLSKGPGLRNVSADCMQN 68

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S + +     V  + G    S+ +   +++  R L I++    +   L+  L I WL+
Sbjct: 69  HESGTPWRVHHTV--LSGSTQFSVSVTKHENK--RRLFIDEKA-GLYSTLHNMLCIVWLM 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P +D +      ER RF DR+V   D  +   ++ +ER  R R ++L E   D +W +S+
Sbjct: 124 PQLDHVLLKAPSERLRFFDRVVHVFDKDYASHIVRYERARRDRRKVLREAPQDLNWLASL 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD-GKFD--QSFCAL 243
           E  MA  GV I   R   +NAL  ++ + +   N     L  T  LD G F+  +S    
Sbjct: 184 ENVMAISGVYIAQTR---LNALR-ILQQTMADNNIDSPFLKFTIHLDSGVFELLESQEHA 239

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +Y ++L   R  D   + T  G H     + + DK +T +  STGEQK++L+ + L  
Sbjct: 240 VSQYMQRLKQSRAQDMHGQLTSFGVHNDHFQISHADKNLTASSCSTGEQKILLLSLLLTA 299

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           A         API+LLD+I +HLD   R  L + +  +G Q ++T  D+  F+ L +   
Sbjct: 300 AITKHRVHSQAPIMLLDDIMSHLDYTHRQELVQTIKSVGCQTWITDVDERNFEGLEQC-- 357

Query: 364 FMR 366
           FMR
Sbjct: 358 FMR 360


>gi|254796587|ref|YP_003081423.1| putative DNA replication and repair protein RecF [Neorickettsia
           risticii str. Illinois]
 gi|254589828|gb|ACT69190.1| putative DNA replication and repair protein RecF [Neorickettsia
           risticii str. Illinois]
          Length = 349

 Score =  136 bits (342), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 158/346 (45%), Gaps = 20/346 (5%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           + +FRN+A     F+ +H +  G NG GKT+ILEAIS LSPG G R AS  ++ R GS S
Sbjct: 10  LKDFRNHAFWTASFECRHVLLCGKNGAGKTSILEAISKLSPGLGLRSASNTEMIRSGSLS 69

Query: 72  FFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130
           +  +        G AD+  + +   +D+  R  QIN   ++   ++   +++ WL P M 
Sbjct: 70  WEVSLK----FAGSADLRGVGMSYCEDK--RITQINGKSVQCFKKVIDLVKVMWLTPQMS 123

Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190
            +F+     RRRF DRMV   +P+H   ++ +ER    R ++L  G     W    E ++
Sbjct: 124 NLFTTDKSVRRRFFDRMVALSEPQHLENLVMYERFKSERLKILNAGA-SKMWLDVNEKKL 182

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFCALKEEYAK 249
           AEL + I  ARV  I  L    M       F  +++ L   +    D+       +    
Sbjct: 183 AELCIAITDARVSFIRQL----MSNFPSRGFGSLEIKLLCPVASAIDKVGSSQQMQSIQS 238

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L   R +D+++ +   G HR+D +        T    STGEQK++++GI LA   LI  
Sbjct: 239 ALERSRAVDTVTGKMQFGVHRTDFLATVRQGDNTARCYSTGEQKLLILGIMLAAGELIDI 298

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
                         AHLD    +A     T    Q F +  D S F
Sbjct: 299 ILLDDIF-------AHLDPQNSSAFLLEATKKNCQFFFSDLDNSKF 337


>gi|190571298|ref|YP_001975656.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213018695|ref|ZP_03334503.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|190357570|emb|CAQ55009.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995646|gb|EEB56286.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 359

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 109/370 (29%), Positives = 176/370 (47%), Gaps = 15/370 (4%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           MT    IK L +  FR++++  L  D +  +  G NG+GKTNILEAIS L+   G ++A 
Sbjct: 1   MTTHCYIKKLKLYNFRSHSNFELDLDDRPVVVTGKNGIGKTNILEAISLLAKSNGMKKAK 60

Query: 61  YADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             ++  R  + S+   +    G E L  I I      + + + +QI+         L + 
Sbjct: 61  INEMQNRRSNESWVVYYDFFNGAE-LNSIGIG----KNLNKKLIQIDGKTQSSYSSLYRI 115

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             + WL+P MD I      +R +FLDR+V   +  +    + + +    R++LL E   D
Sbjct: 116 SNVIWLIPQMDYILLNSPSDRLKFLDRIVSLFEENYTYCYMKYRKAKHERSKLLRENILD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            SW SS+E  MA   + I   R  ++  L   I  +   E FP   L  +  L      +
Sbjct: 176 ESWLSSLENVMATNAIDILRMRSSVLKILQDTIDNH-SCEFFPKASLKFSSQL------T 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA-ITIAHGSTGEQKVVLVG 298
                E +  +L + R+ DS++ R     H  +  V +C K  + I   STGEQK++L+ 
Sbjct: 229 LNDTAEYFQNRLKENREKDSLTGRVTFSVHNDNFWV-FCQKGDMPINLCSTGEQKLLLLS 287

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           I L+  +        AP+LLLD+I +HLD+D R  L   V  I  Q ++T  ++  F++ 
Sbjct: 288 IILSSVKARCIHYNKAPLLLLDDIMSHLDKDYRKVLMEEVLSIQCQTWITDVNQDNFNNY 347

Query: 359 NETAKFMRIS 368
             + KF  +S
Sbjct: 348 LCSFKFFELS 357


>gi|225677102|ref|ZP_03788104.1| recombination protein F [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590861|gb|EEH12086.1| recombination protein F [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 365

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 177/371 (47%), Gaps = 15/371 (4%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M     IK L +  FR++++  L  D    +  G NG+GKTNILEAIS L+   G ++A 
Sbjct: 1   MATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAK 60

Query: 61  YADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +++  R  +  +   +    GM+     SI +    D+  + +QI+         L K 
Sbjct: 61  ASEIQNRFSNEDWIVHYDFFNGMDF---NSIGIAKSFDK--KLIQIDGKTQSSYSSLYKI 115

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             + WL+P MD +      +R +FLDR+V   +  +    + + +    R++LL +   +
Sbjct: 116 SNVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKYRKAKHERSKLLRKNILN 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +W SS+E  MA   V I   R  ++  L   I  +   E FP   L  +  L      +
Sbjct: 176 KNWLSSLENIMAVNAVSILRMRSSVLKTLQDTIDNH-SSELFPKASLKFSSQL------T 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVG 298
                E +  +L + R+ DS++ R   G H  +  V +C K  + I   STGEQK++L+ 
Sbjct: 229 LNDTAEYFQNRLKENREKDSLTGRVTFGVHNDNFRV-FCQKRNVPINLCSTGEQKLLLLS 287

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           I L+  +        AP+LLLD+I +HLD+  R AL   V  I  Q ++T  ++  F+S 
Sbjct: 288 IILSSVKARCIHYNKAPLLLLDDIMSHLDKHYRKALMEEVLSIQCQTWITDVNQDNFNSY 347

Query: 359 NETAKFMRISN 369
             + KF  +SN
Sbjct: 348 LYSFKFFELSN 358


>gi|218682258|ref|ZP_03529859.1| recombination protein F [Rhizobium etli CIAT 894]
          Length = 123

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 57/122 (46%), Positives = 83/122 (68%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYAS  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYASAALTLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +ET ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGAAGGFSIFAALDGMEGDVEIGTGIETGEESTARRLRINGTPAKTADELTDHL 120

Query: 121 RI 122
           R+
Sbjct: 121 RL 122


>gi|296531698|ref|ZP_06894532.1| recombination protein F [Roseomonas cervicalis ATCC 49957]
 gi|296267973|gb|EFH13766.1| recombination protein F [Roseomonas cervicalis ATCC 49957]
          Length = 259

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FR+YA L L F A   +  G NGVGKTN+LEAIS L+PGRG R A   ++
Sbjct: 7   LRLTRLMLQDFRSYAQLDLRFQAGVVVIAGRNGVGKTNLLEAISLLTPGRGLRNARAGEL 66

Query: 65  TR-IGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R  G  S   T A   +G  G   I    +   DR  R  +++   +R   EL+  +  
Sbjct: 67  GRREGEESRPWTIAGHFDGPAGPMTIGTGQDPASDR--RGFRLDGAPLRSQAELSAQIAA 124

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P MDR+F   +  RR+FLDR+V+A +P H R +  +E  M  RNRLL EG  D+ W
Sbjct: 125 LWLTPQMDRLFQEGASGRRKFLDRLVWAREPSHARDVAAYESAMSQRNRLLAEGRRDARW 184

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
            +++E  MA   V    +R      L++ +   +    FP  +L L
Sbjct: 185 LAALEDTMARHAVAAIASRRTSCAQLNATLRAGIAGA-FPAARLEL 229


>gi|154503046|ref|ZP_02040106.1| hypothetical protein RUMGNA_00868 [Ruminococcus gnavus ATCC 29149]
 gi|153796287|gb|EDN78707.1| hypothetical protein RUMGNA_00868 [Ruminococcus gnavus ATCC 29149]
          Length = 361

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 165/355 (46%), Gaps = 24/355 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L + FD++  I  GDN +GKTNILEA+      +  R     D+ +
Sbjct: 3   IKSLKLKNYRNYELLDMTFDSKTNILYGDNALGKTNILEALYLSGTTKSHRGTKDRDLIQ 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   S   T    +GME   D+ +K       S + + IN + IR   EL   +   + 
Sbjct: 63  FGREESHLETIVEKKGMEFQIDMHLK-----KNSPKGIAINKIPIRKASELFGIVHFVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I       RRRF+D  +  ID  +   + ++ R++  RN LL E Y       +
Sbjct: 118 SPEDLNIIKDGPAGRRRFIDLELSQIDKVYLSNLSNYNRIINQRNSLLKELYHQDHLMDT 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQS 239
           +   + Q+AE G K+  +R + I  ++ +I +         I   LTG    ++  ++ S
Sbjct: 178 LDIWDMQLAEYGTKVIESRKQFIRQVNQIIAD---------IHYRLTGGRERIELSYESS 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             +L  E A K    R+ D   + T +GPHR DL     D  I    GS G+Q+   + +
Sbjct: 229 LGSLSLEQALK--KNRERDIRMKSTSVGPHRDDLCFLSGDLDIR-KFGSQGQQRTAALSL 285

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            L+   L+       PILLLD++ + LD+ ++N L   + DI + I  TG D+ V
Sbjct: 286 KLSEIELVKEVIKDTPILLLDDVLSELDKHRQNYLLDSIHDIQTVITCTGLDEFV 340


>gi|154483926|ref|ZP_02026374.1| hypothetical protein EUBVEN_01632 [Eubacterium ventriosum ATCC
           27560]
 gi|149735417|gb|EDM51303.1| hypothetical protein EUBVEN_01632 [Eubacterium ventriosum ATCC
           27560]
          Length = 362

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 171/350 (48%), Gaps = 24/350 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI-G 68
           + +S FRNY SL L  D +  I  G N  GKTN+LEAI   S  +  R +  A++ +   
Sbjct: 6   IELSNFRNYDSLSLELDDKTNILYGKNAQGKTNVLEAIYLCSTTKSHRSSKDAELIKFEN 65

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           +      F   +G E   DI +    R ++S + + IN + I+   EL     + +  P 
Sbjct: 66  NEGHIKLFINKKGREYRIDIHL----RKNKS-KGIAINGIPIKKASELFGIFNVIFFSPE 120

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
              I      ERRRF+D  +  +D  +   +I++ +++  RN+LL + Y       +++ 
Sbjct: 121 DLDIIKNGPAERRRFVDMELCQLDKIYVYNLINYNKVLGQRNQLLKDIYMKPELEDTLDV 180

Query: 189 ---QMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCAL 243
              Q+AE G K+   R + I  ++ +I    +K  EN   I++           +  C  
Sbjct: 181 WDMQLAEYGSKVIKRREQFIKDINKIIKPIHRKLTENSEEIEVVY---------KKSCNE 231

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLA 302
            E Y  K+ + RK D   + T  GPHR D++  + +K I I  +GS G+++ V + + LA
Sbjct: 232 DELY-NKIIENRKKDIKLKSTSAGPHRDDIL--FFNKDINIRTYGSQGQKRTVALSLKLA 288

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
              L+ +     P+LLLD++ + LD D++N L + + +I + I  TG D+
Sbjct: 289 EIELVKSLINDTPVLLLDDVLSELDSDRQNHLLKSLDEIQTVITCTGLDE 338


>gi|307243415|ref|ZP_07525572.1| putative recombination protein F [Peptostreptococcus stomatis DSM
           17678]
 gi|306493225|gb|EFM65221.1| putative recombination protein F [Peptostreptococcus stomatis DSM
           17678]
          Length = 371

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 179/360 (49%), Gaps = 23/360 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  +RNY  L + F+ +  + +G NG GKTN++EAI F+S GR FR     ++ +
Sbjct: 3   INSLKLVNYRNYDDLLVEFNKKVNLIIGMNGQGKTNLVEAIGFMSIGRSFRTNKDRELIK 62

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             + + +    F R        ++  K+E    +  + +++N V I+ + EL  +L +  
Sbjct: 63  FSAENLYCGCNFTR-------NNMDKKIEIVVAKDKKGVKVNGVSIKSMQELLGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   R+      ERR F+D+ +  I PR+   + ++ +++  RN +L     D +   
Sbjct: 116 FSPEDLRLVKDGPKERRSFIDKEISQIMPRYYSLLTNYNKILHQRNTVLKSYRIDENLLD 175

Query: 185 SIEAQMAELGVKINIAR---VEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQS 239
             +  M+    +I + R   +E I+ +SS I +   + KEN   I  +      G+ D S
Sbjct: 176 VYDETMSTYASEIYLIRNKFIEKISKISSEIHKNLTMDKENLTIIYKNQVDLESGQ-DAS 234

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              LK    +KL + R  D ++R T +GPH+ D+ +   D  + + +GS G+Q+   + +
Sbjct: 235 QVRLK--LLEKLRESRGGDMITRTTKVGPHKDDMKIFINDIDVRM-YGSQGQQRTASISL 291

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KSVFD 356
            L+   LI    G  P+L+LD++ + LD+ ++  L   + DI  Q+F+T  D   K++ D
Sbjct: 292 KLSEIELIKQEVGDYPVLILDDVFSELDQTRQKMLVEKLEDI--QMFVTSADPLHKNILD 349


>gi|331092115|ref|ZP_08340946.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402316|gb|EGG81887.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 361

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 166/352 (47%), Gaps = 18/352 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  FRNY  L L FD+   I  GDN  GKTNILEAI      +  R     D+ R
Sbjct: 3   IKSLKLKNFRNYDLLNLDFDSATNILYGDNAQGKTNILEAIYLSGTTKSHRGTKDRDMIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   S   T    +G+E   DI +K       S + + IN + IR   EL   + + + 
Sbjct: 63  FGQEESHIETVIEKKGIEFKTDIHLK-----KNSPKGIAINKMPIRKASELFGVIHLVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  +D  +   + ++ R++  RN+LL + Y      S+
Sbjct: 118 SPEDLNIIKNGPAERRRFIDMELSQLDKVYLNDLANYNRIINQRNKLLKDIYGREDLIST 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           +   + QMA  G ++   R + I  ++ +I     K      KL+L       +++S   
Sbjct: 178 LDIWDMQMAHYGDRVMQRRAKFIAQINGIIENVHGKLTGGKEKLNLF------YEKSIG- 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
              ++++ +   R+ D   + T +GPHR D+     D  I    GS G+Q+   + + L+
Sbjct: 231 -DADFSEAILKNRERDIRMKSTSVGPHRDDICFKAGDLDIR-KFGSQGQQRTAALSLKLS 288

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
              L+       PILLLD++ + LD++++N L   +++I + +  TG D+ V
Sbjct: 289 EIELVKLLINDTPILLLDDVLSELDKNRQNYLLDSISNIQTIVTCTGVDEFV 340


>gi|88608256|ref|YP_506094.1| putative DNA replication and repair protein RecF [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600425|gb|ABD45893.1| putative DNA replication and repair protein RecF [Neorickettsia
           sennetsu str. Miyayama]
          Length = 349

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 108/351 (30%), Positives = 160/351 (45%), Gaps = 30/351 (8%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           + +FRN+A     F  +H +  G NG GKT+ILEAIS LSPG G R AS  ++ R GS S
Sbjct: 10  VKDFRNHAFWTGSFKCRHVLLCGKNGAGKTSILEAISKLSPGLGLRSASNIEMVRSGSLS 69

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
           +  +  +  G   L ++ +     +D+  R  ++N   I+   ++   +++ WL P M  
Sbjct: 70  WEVSL-KFAGSTDLREVGMGY--YEDK--RVTKLNGKSIQCFKKVIDLVKVMWLTPQMSN 124

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
           +F+     RR+F DRMV   +P+H   ++ +ER    R ++L  G     W    E ++A
Sbjct: 125 LFTTDKSVRRKFFDRMVALSEPQHLENLVMYERFKSERLKILNAGA-SKMWLDVNEKKLA 183

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENF--PHIKL-----SLTGFLDGKFDQSFCALK 244
           EL + I  ARV  I  L    M     + F  P IKL     S  G + G   Q  C   
Sbjct: 184 ELCIAITDARVSFIGQL----MSNFPSKGFGSPEIKLFCPVASAIGRV-GSSQQMQC--- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L   R +D+++ +   G HR+D +        T    STGEQK++++GI LA  
Sbjct: 236 --IQSALERSRAIDTVTGKMQFGVHRTDFLATVRQGDNTARCYSTGEQKLLILGIILAAG 293

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            LI                AHLD    +A     T    Q F +  D S F
Sbjct: 294 ELIDIILLDDIF-------AHLDLHNSSAFLLEATKKNCQFFFSDLDNSKF 337


>gi|329121617|ref|ZP_08250238.1| recombination protein F [Dialister micraerophilus DSM 19965]
 gi|327468772|gb|EGF14249.1| recombination protein F [Dialister micraerophilus DSM 19965]
          Length = 356

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 169/355 (47%), Gaps = 12/355 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK   + + RN+ ++ +  D   TIF G NG GKTN+LE+++  S G+ FR     ++
Sbjct: 1   MKIKKFRLIQVRNFENIEIETDKNITIFTGKNGAGKTNLLESVNLASFGKSFRTNKDEEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +       +      G     +I IK+   + + +    +N+  I+  D L    +   
Sbjct: 61  IKFDKNECTTILTFNSGKSN-HEIKIKISKTNGKQIF---LNENRIKNKD-LVGIFKTVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182
             P   ++  G   +RRRFLD  +  I+PR+    I+++R ++ RN  L           
Sbjct: 116 FNPDEMQLIKGNPQKRRRFLDMEISQINPRYYYEWINYKRAVQQRNAELKNAQIRGIKPQ 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               + Q+A+    I   R+E I  L+  I   E +  +N  ++KL        K + +F
Sbjct: 176 TDLWDMQIAKGAAYIVRKRIEAIQKLNESIEKTEEILTKNRENLKLYYIQKESKKNETNF 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E Y  KL + R++D    +T +GPHR D++     K I+  +GS G+Q+  ++ I 
Sbjct: 236 DV--EWYIHKLLEKRQVDIKFCQTSVGPHRDDILFLLNGKDIS-KYGSQGQQRTAILSIK 292

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           L+    I   TG  P+LLLD++ + LD +++  LF  V +   Q  MT T+K  +
Sbjct: 293 LSEMEFIKKETGEYPVLLLDDVGSELDRERKKVLFEYVKEKDIQTIMTMTEKPAY 347


>gi|51891142|ref|YP_073833.1| DNA repair and genetic recombination protein [Symbiobacterium
           thermophilum IAM 14863]
 gi|81692267|sp|Q67TK4|RECF_SYMTH RecName: Full=DNA replication and repair protein recF
 gi|51854831|dbj|BAD38989.1| DNA repair and genetic recombination protein [Symbiobacterium
           thermophilum IAM 14863]
          Length = 375

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 163/350 (46%), Gaps = 13/350 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  FRNY SL + F     +  GDN  GKTN+LEAI FL+ GR  R +   D+ +
Sbjct: 3   LSTLQLGAFRNYDSLTIHFSPGLNVLYGDNAQGKTNLLEAIHFLATGRSHRTSRDPDMVQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIK--LETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G     +  A V    G  ++ ++  L+TR     + L+IN +  R +  L   L +  
Sbjct: 63  EGREELLARAAVVR-RTGTIELELRCGLQTR-----KQLKINGIAERKIARLVGSLAVVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   ++  G    RRRFLD  +  I   +   ++ + RL+  RN LL +   D    +
Sbjct: 117 FSPDDLQLLKGPPSGRRRFLDLELSQISQTYLHHLMAYNRLVAQRNTLLKQPVIDEGLMA 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+ E G ++ + R E +  LS +   Y +        L L     G  D     L+
Sbjct: 177 VYDEQLVETGAQLVVRRAEAVRRLSPIASRYHRMLAEDREDLELAYQSQGVGDDGAADLE 236

Query: 245 EEYAKKLFDGRKMDSMSRR---TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
               +   +  ++ S  RR   TL+GPHR D+      +   + + S G+Q+  ++ + L
Sbjct: 237 TVRRRLERELARLRSEERRRQVTLVGPHRDDVGFWVAGRDARL-YASQGQQRTAVLALKL 295

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           A    +S   G  P+LLLD++++ LD  +R+ L   V + G Q F+T TD
Sbjct: 296 AELEFMSEEIGEPPLLLLDDVASELDPHRRHYLLSAVRE-GVQSFITCTD 344


>gi|289422543|ref|ZP_06424386.1| DNA replication and repair protein RecF [Peptostreptococcus
           anaerobius 653-L]
 gi|289157115|gb|EFD05737.1| DNA replication and repair protein RecF [Peptostreptococcus
           anaerobius 653-L]
          Length = 371

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 171/349 (48%), Gaps = 14/349 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  +RNY  L + F+    + +G NG GKTNI+E+++ ++ G+ FR +   ++ +
Sbjct: 3   INSLKLVNYRNYNDLSIDFNEHINLILGKNGQGKTNIVESLTLIAIGKSFRTSKDKELIK 62

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S +   +F R        +I  K+E    +  + +++N V ++ + +L  +L +  
Sbjct: 63  FDKDSLYIGCSFTR-------NNIDKKIEIAIAKDKKGIKVNGVSVKSIQDLLGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   ++      ERR F+D+ +  I PR+   +  + +++  RN+LL   Y D +  +
Sbjct: 116 FSPEDLKLIKDGPKERRSFIDKEISQIMPRYYSILTSYNKVLDERNKLLKSQYIDRNLLA 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCA 242
                +A    +I + R + +  LS +  +  QK   +   +K+     ++        +
Sbjct: 176 VYSETLANYAAEIYLIRRDFVGKLSIISSDLHQKLTSDKEVLKIRYKSQIEVTDQDDIRS 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E+      +    D ++R T IGPHR D+++ Y +      +GS G+Q+   + + L+
Sbjct: 236 MREKIISAHEENIDHDMLNRNTRIGPHRDDIVI-YLNDIDVRLYGSQGQQRTASISLKLS 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
              LI    G  P+L+LD++ + LD++++  L   + DI  Q+F+T  D
Sbjct: 295 EIELIKQEIGDYPVLILDDVFSELDQNRQKMLVEKLEDI--QMFVTTAD 341


>gi|296131554|ref|YP_003638801.1| DNA replication and repair protein RecF [Thermincola sp. JR]
 gi|296030132|gb|ADG80900.1| DNA replication and repair protein RecF [Thermincola potens JR]
          Length = 368

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 176/358 (49%), Gaps = 20/358 (5%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI  LN   FRNY +L L F  +  +FVGDN  GKTNILEAI +   GR  R    AD+ 
Sbjct: 5   KIALLN---FRNYQTLTLSFHDKLNLFVGDNAQGKTNILEAIYYSGTGRSHRTNKDADLI 61

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +  + ++F      E + G   + I L     + ++   +N V  +   ++   +++   
Sbjct: 62  K-WNENYFILKISGENLHGRFVLEIGLNREGKKKIK---LNGVQKKRTGDILGTVKVILF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    +  G  + RR+F+D  +  I P +   ++ ++R++  RN LL +   + +   +
Sbjct: 118 SPEDLTLVKGSPVVRRKFIDTEISQISPGYYYNLLKYQRILVQRNALLKDIKMNKNLADN 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           +   + Q+A  G K+   +++++  L+ L     +K      +L  T ++    D+   +
Sbjct: 178 LSVWDRQLALFGAKLIYKKLDVLKKLTPLTRLMHRKITNGKEELE-TRYISNVVDKDNLS 236

Query: 243 LKEEYAKKLF----DGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           L+E   +KLF       + + + R  T+IGPHR DL+  Y +      +GS G+Q+   +
Sbjct: 237 LEE--IEKLFLEKIAANRDEELDRGITIIGPHRDDLVF-YINGKEVKHYGSQGQQRSCSL 293

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            I LA   L+   TG  P+LLLD++ + LDED+R  L   V     Q F+T TD S+ 
Sbjct: 294 SIKLAELELVKGETGEYPLLLLDDVMSELDEDRRQYLLESVQS-KIQTFITTTDASLL 350


>gi|210614351|ref|ZP_03290170.1| hypothetical protein CLONEX_02384 [Clostridium nexile DSM 1787]
 gi|210150695|gb|EEA81704.1| hypothetical protein CLONEX_02384 [Clostridium nexile DSM 1787]
          Length = 365

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 161/352 (45%), Gaps = 18/352 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRNY  L + FDA   IF GDN  GKTNILE+I      +  R     D+ +
Sbjct: 3   VKSLKLKNFRNYNLLNIEFDAATNIFCGDNAQGKTNILESIYLSGTTKSHRGTKDRDMIQ 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +   T     G+    D+ +K       S + + IN + IR   EL   + I + 
Sbjct: 63  FGHDEAHIETVVEKNGIPFQIDMHLK-----KNSPKGIAINKIPIRKASELFGIINIVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  +D  +   + ++ R++  RN+LL + Y  +    +
Sbjct: 118 SPEDLNIIKNGPAERRRFIDLELAQLDKLYLSDLSNYNRIINQRNKLLKDVYNRNDLLET 177

Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           +E    Q+ + G KI   R + I  ++ +I E  +K      +L L       ++     
Sbjct: 178 LEIWDLQLIQYGNKIIERRKQFIGQVNEIISEVHRKLTGGREELKLY------YEPGIGN 231

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L  E+ K L   R+ D   + T +GPHR D+     D  I    GS G+Q+   + + L+
Sbjct: 232 L--EFEKALLKNRERDIRMKSTSVGPHRDDICFMTNDLDIR-KFGSQGQQRTAALSLKLS 288

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
              L+       PILLLD++ + LD+ ++N L   + D+ + I  TG D  V
Sbjct: 289 EIELVKEIIKDTPILLLDDVLSELDKHRQNYLLDSIRDVQTLITCTGLDDFV 340


>gi|164686443|ref|ZP_02210471.1| hypothetical protein CLOBAR_00008 [Clostridium bartlettii DSM
           16795]
 gi|164604454|gb|EDQ97919.1| hypothetical protein CLOBAR_00008 [Clostridium bartlettii DSM
           16795]
          Length = 371

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 181/366 (49%), Gaps = 16/366 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  FRNY +L L F     + VG NG GKTNI+EAI  LS G+ FR     ++
Sbjct: 1   MRLNNLQLINFRNYDNLHLNFKRNINLLVGKNGQGKTNIVEAIYMLSFGKSFRTNKDKEI 60

Query: 65  TRIGSPSFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + GS + +     ++   +GL +++I        + + +++N + I  + EL  +L + 
Sbjct: 61  IKFGSENLYIGGNYLKNSSKGLIEVAI------GNNKKGIKVNKIHIHKIQELLGNLNVV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   ++      ERR F+D+ +  I P++   ++++ +++  RN+ L     D +  
Sbjct: 115 IFSPEDLKLVKDGPRERRSFIDKEISQIMPKYYNYLVNYNKILIQRNKTLKNRIVDENLL 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFC 241
           S  +  +A  G  I + R + I  ++ +  E  +K   N   + ++    ++   + +  
Sbjct: 175 SVYDESLANYGAYIYVLRRDFIKKIAKISNEMHKKLTGNNEELLITYKNQINLTDEDTVK 234

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
             K++   KL   R+ D  +R T  G H+ DL +   D  + + +GS G+Q+   + + L
Sbjct: 235 DAKDKLLSKLESNRQRDIETRMTKYGIHKDDLNIFINDLDVKL-YGSQGQQRTASISLKL 293

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KSVFDSL 358
           +   LI       P+L+LD++ + LDE ++  L   + D+  Q+F+T  +   K +FD  
Sbjct: 294 SEIELIKQEMNDNPVLILDDVFSELDETRQKLLVENLGDV--QMFITSAELAHKRIFDE- 350

Query: 359 NETAKF 364
           +ETA F
Sbjct: 351 SETAIF 356


>gi|188584646|ref|YP_001916191.1| DNA replication and repair protein RecF [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|226737815|sp|B2A2Y9|RECF_NATTJ RecName: Full=DNA replication and repair protein recF
 gi|179349333|gb|ACB83603.1| DNA replication and repair protein RecF [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 386

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 183/385 (47%), Gaps = 19/385 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  FRNY++L+L F     +F G N  GKTN+LEAI +L+ G+  R     ++
Sbjct: 1   MKLTELCLKNFRNYSNLKLNFKKPIILFFGANAQGKTNLLEAIYYLATGKSHRAQKEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +  F+     +E  +    + I    ++ ++ + L++N++         K + +  
Sbjct: 61  IRWETSGFYLK-GELEKEQAQYTLEIITNYQNGKN-KNLKVNNLSQTNTRNFLKTMNVVI 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RRRF+D+ +  +DP +   + ++ + +R RN+LL + Y D +  +
Sbjct: 119 FSPEDLMLVKGTPDNRRRFIDQEITQVDPSYDFYLKNYFKALRQRNKLL-KTYQDKNTLA 177

Query: 185 S----IEAQMAELGVKINIARVEMINA---LSSLIMEYV--QKENFPHIKLSLTGFLDGK 235
                   Q+   G KI + R E+I+    L+ LI   +  Q EN          F D K
Sbjct: 178 QHLPPWNQQLVHYGSKIILKREEVIHKIRLLARLIYRKITNQTENLELDYSPSLEFEDCK 237

Query: 236 FDQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           F +      L  ++   L +  + D   R T IGPHR DLI    +K      GS G+Q+
Sbjct: 238 FREQLSGEKLAHKFLNTLNENLQSDIEKRTTSIGPHRDDLIFKINNKDAR-QFGSQGQQR 296

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
             ++ + +A   +I    G  PILLLD++ + LD++++  L  + T+   Q F+T T   
Sbjct: 297 TTVLALKMAELEMIKGEKGEFPILLLDDVLSELDDNRKKHLLNL-TEGRVQTFVTSTSME 355

Query: 354 VFDS---LNETAKFMRISNHQALCI 375
            F+    +   ++  RI N +A+ +
Sbjct: 356 DFNGDVDIKAKSQVFRIDNGEAVKL 380


>gi|258513370|ref|YP_003189592.1| DNA replication and repair protein RecF [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777075|gb|ACV60969.1| DNA replication and repair protein RecF [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 376

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 171/360 (47%), Gaps = 28/360 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK L I+ FRNY SL +       IF+GDN  GKTNILEAI FL  GR FR +   ++
Sbjct: 1   MRIKELFINNFRNYKSLHIKPKENLNIFIGDNAQGKTNILEAICFLLQGRSFRTSHEKEI 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               S  S   T  +        DIS+          + ++IN+       EL  +    
Sbjct: 61  INFDSEQSKLKTELKAYNQNYSIDISL-----SRTKPKIIKINNSTTS-KPELATNFGTI 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------G 176
              P    I  G   ERRRFLD  + +  P+++   +++++++  RN LL E        
Sbjct: 115 VFTPDQLSIIKGSPKERRRFLDLELASFYPQYKYYFVNYQKVLLQRNNLLKELKEKKQAD 174

Query: 177 YFD--SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TG 230
            FD    W    + Q+   G KI +AR+E++  L  +  +   +      KL++    + 
Sbjct: 175 TFDLLELW----DNQLISYGAKILMARMEILKKLIPMAQQIHNQITSDKEKLTIRYRSSL 230

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            L+  F +    + +++ + +   R+ D +  +T +GPHR DL+    +K IT   GS G
Sbjct: 231 NLNSNFREEL--IYDQFREVILKNRQQDYLKGQTTVGPHRDDLVFLINNKNIT-DFGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+ +++ +  A   L S      P+LLLD++   LD  ++  +F ++     Q+F+T T
Sbjct: 288 QQRTIILTLKFAIINLWSCELNDVPVLLLDDVFFELDSKRQKYIFDLLNK-DVQVFITST 346


>gi|218659035|ref|ZP_03514965.1| recombination protein F [Rhizobium etli IE4771]
          Length = 115

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/108 (54%), Positives = 82/108 (75%)

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           +GPHR+DLIV + +KA+     STGEQK +LVG+ LAHARL+ N TG APILLLDEI+AH
Sbjct: 7   MGPHRADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGNLTGHAPILLLDEIAAH 66

Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           LDE +R ALF ++  +G Q FMTGTD+++F +L + A+F  +++ + L
Sbjct: 67  LDEGRRAALFDLIDGLGGQAFMTGTDRTMFSALADRAQFFTVADGKVL 114


>gi|313892256|ref|ZP_07825849.1| DNA replication and repair protein RecF [Dialister microaerophilus
           UPII 345-E]
 gi|313119394|gb|EFR42593.1| DNA replication and repair protein RecF [Dialister microaerophilus
           UPII 345-E]
          Length = 356

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 169/355 (47%), Gaps = 12/355 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK   + + RN+ ++ +  D   TIF G NG GKTN+LE+++  S G+ FR     ++
Sbjct: 1   MKIKKFRLIQVRNFENIEIETDKNITIFTGKNGAGKTNLLESVNLASFGKSFRTNKDEEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +       +      G     +I IK+   + + +    +N+  I+  D L    +   
Sbjct: 61  IKFDKNECTTILTFNSGKSN-HEIKIKISKTNGKQIF---LNENRIKNKD-LVGIFKTVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   ++  G   +RRRFLD  +  I+PR+    I+++R ++ RN  L           
Sbjct: 116 FNPDEMQLIKGNPQKRRRFLDMEISQINPRYYYEWINYKRAVQQRNAELKNAQIRGVKPQ 175

Query: 185 S--IEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSF 240
           +   + Q+A+    I   R+E I  L+  I +  ++  +N  ++KL        K + +F
Sbjct: 176 TDIWDMQIAKGAAYIVRKRIEAIQKLNESIEKTEERLTKNRENLKLYYIQKESKKNETNF 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E Y  KL + R  D    +T +GPHR D++     K I+  +GS G+Q+  ++ I 
Sbjct: 236 DV--EWYIHKLLEKRHEDIKFCQTSVGPHRDDILFLLNGKDIS-KYGSQGQQRTAILSIK 292

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           L+    I   TG  P+LLLD++ + LD +++  LF  V +   Q  MT T+K  +
Sbjct: 293 LSEMEFIKKETGEYPVLLLDDVGSELDGERKKVLFEYVKEKDIQTIMTMTEKPAY 347


>gi|258646401|ref|ZP_05733870.1| DNA replication and repair protein RecF [Dialister invisus DSM
           15470]
 gi|260403802|gb|EEW97349.1| DNA replication and repair protein RecF [Dialister invisus DSM
           15470]
          Length = 355

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 172/350 (49%), Gaps = 24/350 (6%)

Query: 14  EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP--S 71
           E RN+    +      T+  G NG GKTNI+E+I F S G+ FR ++  ++ R+     +
Sbjct: 10  EIRNFEDFSIDPAENMTVLTGKNGTGKTNIIESIYFASVGKSFRTSNDEELIRLNKEEGT 69

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
               F+ V G+    +I IKL     + +    IN+   +   EL    R     P   +
Sbjct: 70  ILLDFS-VRGV--THEIKIKLSRNKGKKI---LINETATKK-RELMGMFRTVLFTPDDLQ 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSWCSSIEAQ 189
           +  G    RRRF+D  +  + PR+   ++ + R ++ RN    E  F   ++     + Q
Sbjct: 123 LIKGAPQNRRRFIDLEISQVSPRYYEEILRYGRAVQQRNAAFKEARFHGFTADVDVWDMQ 182

Query: 190 MAELGVKINIARVEMINALSSLI--MEYV---QKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +A+    I   R+E I  ++ ++  ME +   +KE+   IK   +G  + +FD+ +    
Sbjct: 183 IAKGASYIVKKRMETIGKINEIVSSMESLLTDEKESIL-IKYRKSGNQEERFDEEW---- 237

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y +KL   R+ DS    T IGPHR DLI       I+ ++GS G+Q+  ++ + LA  
Sbjct: 238 --YLEKLALSREEDSRFCHTSIGPHRDDLIFLMNGNDIS-SYGSQGQQRTAILSVKLAEL 294

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
             +   TG  P+LLLD++ + LD+++R+ALF  + +   Q  +T  D+S+
Sbjct: 295 EFVKKETGEYPLLLLDDVGSELDKERRDALFSYLIEKEIQTIITTADESL 344


>gi|24212703|ref|NP_710184.1| recombination protein RecF [Leptospira interrogans serovar Lai str.
           56601]
 gi|51316470|sp|Q8FA32|RECF_LEPIN RecName: Full=DNA replication and repair protein recF
 gi|24193334|gb|AAN47202.1| recombination protein RecF [Leptospira interrogans serovar Lai str.
           56601]
          Length = 365

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 167/348 (47%), Gaps = 17/348 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  FRN+  L L FD++   FVGDNG GKTN+LEAI  LS  + FR +  +++ R
Sbjct: 3   LKHLTIQNFRNHEELSLDFDSRLIFFVGDNGEGKTNLLEAICILSWLKSFRESEDSNLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWL 125
            GS ++   F R +  + L +  +++      SV R L+ N   I+   +L        L
Sbjct: 63  WGSENY---FLRGKIKDNLKESVLEIGFTSKPSVKRKLKFNQEEIKKRTDLIGKFITVLL 119

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   +I  G   ERR+F+D  + + DP +   ++++ ++++ RN LL  G  D S  S 
Sbjct: 120 TPMDLKIIEGGPAERRKFIDAFISSFDPFYLESLLEYNKILKHRNALLKSGNPDISHLSI 179

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG--KFDQSFCAL 243
            + ++ E G+ I   R E++  L+S     + K         L+G  DG     +     
Sbjct: 180 WDKKIVEKGIFILNKRREVVLELNSFYRVNLDK---------LSGGKDGLELIYKPNVKD 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++E+ +KL      D     T +G HR DL +    + IT   GS G+++  ++ +  A 
Sbjct: 231 QDEFLEKLNHNLSRDLRLGYTSVGIHRDDLFIGSDQRDIT-EFGSQGQKRSTVIALKAAT 289

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
                N     P+LL+D++   LD  +R     +V   G Q F T TD
Sbjct: 290 FNYYKNILNTIPVLLIDDVIRELDVKRREYFVDLVVTAG-QAFFTTTD 336


>gi|116326858|ref|YP_796578.1| recombinational DNA repair ATPase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116329805|ref|YP_799523.1| recombinational DNA repair ATPase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|122282419|sp|Q04WF5|RECF_LEPBJ RecName: Full=DNA replication and repair protein recF
 gi|122285291|sp|Q056V0|RECF_LEPBL RecName: Full=DNA replication and repair protein recF
 gi|116119602|gb|ABJ77645.1| Recombinational DNA repair ATPase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123494|gb|ABJ74765.1| Recombinational DNA repair ATPase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 365

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 170/347 (48%), Gaps = 15/347 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FR+Y  L L F+++   FVGDNG GKTN+LEAI  LS  + FR +  +++ R
Sbjct: 3   LKHLTLQNFRSYEELSLDFNSRLIFFVGDNGEGKTNLLEAICMLSWLKSFRESEDSNLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            GS ++F    +++G +  + + +   T      R L+ N   ++   +L        L 
Sbjct: 63  WGSENYFLR-GKIKGDQKESVLEVGF-TAKPTVKRKLKFNQEEVKKRTDLIGKFITVLLT 120

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P   +I  G   ERR+F+D  + + DP +   ++++ ++++ RN LL  G  D+S  S  
Sbjct: 121 PMDLKIIEGGPAERRKFIDAFISSFDPFYLECLLEYNKILKHRNALLKTGISDASHLSIW 180

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++ E GV I   R E++  L+S     + K +    +L +    + K        K+E
Sbjct: 181 DRKLIEKGVLILNKRKEIVFGLNSFYQPNLNKLSGGKDELEMIYGPNVK-------DKDE 233

Query: 247 YAKKLFDGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           + +KL  GR +    R   T +G HR DL +   DK      GS G+++  ++ +  A  
Sbjct: 234 FVEKL--GRNLGKDLRLGYTSVGIHRDDLFIG-ADKRDITEFGSQGQKRSTVIALKAATF 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
               N     P+LL+D++   LD  +R     +V + G Q F T TD
Sbjct: 291 NYYRNVLDTMPVLLIDDVIRELDVKRREYFVDLVINAG-QAFFTTTD 336


>gi|24753765|gb|AAN64013.1|AF434658_10 recombination protein RecF [Leptospira interrogans]
          Length = 365

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 167/348 (47%), Gaps = 17/348 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  FRN+  L L FD++   FVGDNG GKTN+LEAI  LS  + FR +  +++ R
Sbjct: 3   LKHLTIQNFRNHEELSLDFDSRLIFFVGDNGEGKTNLLEAICILSWLKSFRESEDSNLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWL 125
            GS ++   F R +  + L +  +++      SV R L+ N   I+   +L        L
Sbjct: 63  WGSENY---FLRGKIKDNLKESVLEIGFTSKPSVKRKLKFNQEEIKKRTDLIGKFITVLL 119

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   +I  G   ERR+F+D  + + DP +   ++++ ++++ RN LL  G  D S  S 
Sbjct: 120 TPMDLKIIEGGPAERRKFIDAFISSFDPFYLESLLEYNKILKHRNALLKSGNPDISHLSI 179

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG--KFDQSFCAL 243
            + ++ E G+ I   R E++  L+S     + K         L+G  DG     +     
Sbjct: 180 WDKKIVEKGIFILNKRREVVLELNSFYKVNLDK---------LSGGKDGLELIYKPNVKD 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++E+ +KL      D     T +G HR DL +    + IT   GS G+++  ++ +  A 
Sbjct: 231 QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIGTDQRDIT-EFGSQGQKRSTVIALKAAT 289

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
                N     P+LL+D++   LD  +R     +V   G Q F T TD
Sbjct: 290 FNYYKNILNTIPVLLIDDVIRELDVKRREYFVDLVVTAG-QAFFTTTD 336


>gi|328956386|ref|YP_004373772.1| DNA replication and repair protein RecF [Carnobacterium sp. 17-4]
 gi|328672710|gb|AEB28756.1| DNA replication and repair protein RecF [Carnobacterium sp. 17-4]
          Length = 373

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 175/378 (46%), Gaps = 26/378 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++S +RNY    ++F     +F+G+N  GKT+++EAI  L+  R  R A+  +  R
Sbjct: 3   LKEIHLSNYRNYEHAEVIFSKGINVFLGENAQGKTSLMEAIYVLAMARSHRTANDKETIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   FARV G     + S  LE    +  +  + N +  + + E   +L +    
Sbjct: 63  -----WEQEFARVSGRIQKKNTSFPLEISISKKGKKAKFNHLEQKKLSEYIGNLNVILFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182
           P    +  G    RR+FLD  +  + P +   ++ ++ L++ RN  L +       D ++
Sbjct: 118 PEDLSLVKGSPSVRRKFLDMEMGQMSPIYLHHLVQYQHLLKQRNSYLKQLSLKKVKDLTF 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI----MEYVQKENFPHI----KLSLTGFLDG 234
              +  Q+AE G  I + R   I  L +       E  +++    I     L +T   D 
Sbjct: 178 LDILTEQLAEFGAAILVERFSFIKKLENWAKPVHAEISRQKEILEIGYSCSLKITNETDK 237

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           K  Q +  L   Y +    GR+ +   R T+ GPHR DL      + +   +GS G+Q+ 
Sbjct: 238 K--QIYSDLMNAYTQ----GRQRELEQRTTIFGPHRDDLKFSVNGRNVQ-TYGSQGQQRT 290

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KS 353
             + + LA   L+   TG  P+LLLD++ + LD++++  L + + +   Q F+T T    
Sbjct: 291 TALSVKLAEIDLMKEMTGEYPVLLLDDVLSELDDERQTHLLKAIQN-KVQTFLTTTSLDG 349

Query: 354 VFDSLNETAKFMRISNHQ 371
           + +++ ET K   I N Q
Sbjct: 350 IKENMLETPKIFLIDNGQ 367


>gi|58584386|ref|YP_197959.1| recombination protein F [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58418702|gb|AAW70717.1| Recombinational DNA repair ATPase, RecF [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 356

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 170/358 (47%), Gaps = 17/358 (4%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M     IK L +S FRN+ +  L  D    + +G NG+GKTNILEAIS L+   G ++A 
Sbjct: 1   MAAHCYIKKLKLSNFRNHLNFELDSDDSSVVIIGKNGIGKTNILEAISLLAKSNGMKKAK 60

Query: 61  YADV-TRIGSPSFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            +++  R  +  +   +    G    AD+ SI +    ++ +  +QI   +      L +
Sbjct: 61  ASEMQNRFSNKDWAVHYDFFNG----ADLNSIGIAKSFNKKL--IQIGGKMQSSYSSLYR 114

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
              + WL+P MD I      +R +FLDR+V   +  +    + + +  R R RLL E   
Sbjct: 115 ISNVIWLIPQMDYILLNSPSDRLKFLDRIVSLFEENYACYYMRYRKAKRERGRLLRENIL 174

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           + SW SS+E  MA   V I   R+ ++  L   I  Y   + FP + L     L      
Sbjct: 175 NKSWLSSLENIMAVNAVNILDMRLSVLKMLQDTINSY-STQFFPKVSLKFNSQL------ 227

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA-ITIAHGSTGEQKVVLV 297
           +     + +  +L + R+ DS++ R     +     V +C +  + I   STGEQK++L+
Sbjct: 228 TLSDTAKYFQNRLRENREKDSLTGRITFCVNNDKFQV-FCQRRDLPINLCSTGEQKLLLL 286

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            I L+  +        AP+LLLD+I +HLD+  R  L   +  I  Q ++T  D++ F
Sbjct: 287 SIILSSVKARCIHYNKAPLLLLDDIMSHLDKYYRKVLIEEMLSIRCQAWITDVDQNNF 344


>gi|226326149|ref|ZP_03801667.1| hypothetical protein COPCOM_03968 [Coprococcus comes ATCC 27758]
 gi|225205691|gb|EEG88045.1| hypothetical protein COPCOM_03968 [Coprococcus comes ATCC 27758]
          Length = 361

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 160/353 (45%), Gaps = 20/353 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L + ++RNY  L + FD    IF GDN  GKTNILE +      +  R     D+ R
Sbjct: 3   IKSLKLKDYRNYEILNIEFDHATNIFYGDNAQGKTNILEGVYLSGTTKSHRGTKDRDLIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +   T     G+    D+ +K       S + + IN V IR   EL       + 
Sbjct: 63  FGQDEAHIETVIEKNGVPWQIDMHLK-----KNSPKGIAINKVPIRRASELFGLTNFVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  +D  +   + ++ R +  RNRLL + Y+      +
Sbjct: 118 SPEDLNIIKNGPAERRRFMDLELSQLDKVYLSDLANYNRTLNQRNRLLKDAYYRDDILDT 177

Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           ++    Q+ + G KI   R+  I  ++++I +   K      ++ L+      ++    A
Sbjct: 178 LDVWDMQLVQYGEKIIQRRLRFIEEVNAIIGDIHHKLTGGRERIGLS------YEPGCGA 231

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301
           L  E A  L   R+ D   + T +GPHR D+   +    I I   GS G+Q+   + + L
Sbjct: 232 LSLEAA--LEKNRERDIRMKSTSVGPHRDDIC--FMAGGIDIRRFGSQGQQRTAALSLKL 287

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           +   L+       P+LLLD++ + LD+ ++N L   + DI + I  TG D+ V
Sbjct: 288 SEIELVRQIIKDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGLDEFV 340


>gi|223940285|ref|ZP_03632143.1| DNA replication and repair protein RecF [bacterium Ellin514]
 gi|223891052|gb|EEF57555.1| DNA replication and repair protein RecF [bacterium Ellin514]
          Length = 361

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 169/352 (48%), Gaps = 19/352 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRNY  L + F     + +GDN  GKTNILEAI  ++  R FR    + +
Sbjct: 1   MHLAHLRLRDFRNYPRLDVDFAPGFQVLLGDNAQGKTNILEAIYLMATLRSFRGVGGSQM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G   +F     V    G  D  IK+      + R L +++  IR + +    +R+  
Sbjct: 61  VRHGQKGYFVGGKVV----GQGDHEIKMYWSP--AERKLSLDNQPIRKLADYFGAIRVVI 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                 ++  G S  RRRF+D ++    P +   +  +   +R RN LL +   D S   
Sbjct: 115 FCTEDLQLVKGTSRARRRFVDLLLSQTHPTYLPLLQRYASALRSRNALLKQRVQDESALE 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           S  A++ +LG  +   R E+I  LS L     ++ +    +L L         +   ++K
Sbjct: 175 SFTAELVKLGNDLIRMRHELIPKLSPLARLAYRRISNDAEELRL---------EYQPSVK 225

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +++A +L   R  +   R TLIGPHR ++ +   D++     GS G+++ + + + +A A
Sbjct: 226 KDFAVELAQTRARERTYRSTLIGPHRDEVQLLLNDRS-AAQFGSEGQKRTLAIALKMAQA 284

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---DIGSQIFMTGTDKS 353
             ++   G APILL+D+I   LD  +R+ L  ++        Q+FMT T+++
Sbjct: 285 EYLTGLHGSAPILLIDDIMGELDAKRRSGLLPLLERAHHTRGQVFMTCTEEN 336


>gi|220927463|ref|YP_002504372.1| DNA replication and repair protein RecF [Clostridium cellulolyticum
           H10]
 gi|254790470|sp|B8I3R5|RECF_CLOCE RecName: Full=DNA replication and repair protein recF
 gi|219997791|gb|ACL74392.1| DNA replication and repair protein RecF [Clostridium cellulolyticum
           H10]
          Length = 372

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 183/381 (48%), Gaps = 40/381 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  +RN+ + R++F  +  IF GDNG GKTNILEAI   + GR  R +  +++ +
Sbjct: 3   VKNLVLENYRNHTNTRILFSDRFNIFYGDNGQGKTNILEAIYLCASGRSHRTSRDSELIK 62

Query: 67  IGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G  + FS    V    GL  DI I       + ++   IND+ I+ +  L  +L     
Sbjct: 63  FGCEN-FSIAVHVSKTGGLDKDIEISYYENQKKQIK---INDIPIKKIGALMGNLYAVLF 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  I P +   +    ++++ RN LL     +     +
Sbjct: 119 SPEDLFIVKQGPTERRRFVDITLSQIKPSYFYNLQQMSKILKQRNTLLKNISSNPKLMDT 178

Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SF- 240
           ++    ++AE+   I  AR      LS +       EN  H       FL GK ++ SF 
Sbjct: 179 VDIWNMRLAEVAAAIIKARRTFSIMLSGM------AEN-QH------NFLTGKSEKISFD 225

Query: 241 --CALK------EEYAKKLFDGRKMDSMSR-----RTLIGPHRSDLIVDYCDKAITIAHG 287
             C+ +       E  +KL+  +   SM R      T +GPHR D  +   DK++ + +G
Sbjct: 226 YRCSFQISGQDDTEQIEKLYLVQLEKSMQRDIVLGYTTVGPHRDDYDIMINDKSLKL-YG 284

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+Q+  ++ + +A   L+   T   P+LLLD++ + LD++++  L   + ++  Q F+
Sbjct: 285 SQGQQRSAVLSLKIAEIELVKKATNQYPVLLLDDVMSELDKNRQKYLMDSIKEV--QTFI 342

Query: 348 TGTDKSVFDS-LNETAKFMRI 367
           T T+K  F + L+  + F +I
Sbjct: 343 TCTNKEHFGNLLSANSNFFKI 363


>gi|260437692|ref|ZP_05791508.1| DNA replication and repair protein RecF [Butyrivibrio crossotus DSM
           2876]
 gi|292809918|gb|EFF69123.1| DNA replication and repair protein RecF [Butyrivibrio crossotus DSM
           2876]
          Length = 361

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 168/360 (46%), Gaps = 24/360 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +++  FRNY + ++ FD    I  GDN  GKTNILEAI      +  + +  +++  
Sbjct: 3   IKSIDLQNFRNYETEKIEFDENTNILYGDNAQGKTNILEAIFLSGTSKSHKGSKDSEIIN 62

Query: 67  -IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            +   S   T    + ++   DI I    R ++S + + +N V I+   EL   + I + 
Sbjct: 63  FLKDESHIKTVISKKEIDYRIDIHI----RKNKS-KGIAVNGVPIKKSSELYGIVNIVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I       RRRF+D  +  +D  +   +I++ + +  RNRLL + YF      +
Sbjct: 118 SPEDLNIIKAGPFARRRFMDMEMCQLDKIYVNSLINYNKAIDQRNRLLKDIYFSPYLEDT 177

Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQS 239
           ++     + + G +I   R   IN L+ +I +         I  +L+G  +    K++  
Sbjct: 178 MDIWDENILKYGSEIIRKRESFINELNEIIGK---------IHFTLSGGRENIVIKYEP- 227

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
            C  +EE+   L   R  D   + T  GPHR D+I    D      +GS G+Q+   + +
Sbjct: 228 -CVKEEEFESVLKSTRDRDKKQKSTCSGPHRDDIIF-LIDNVDIRKYGSQGQQRTAALSL 285

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   ++    G  PILLLD++ + LD  ++N L   + +I + +  TG D+ + +  N
Sbjct: 286 KLAEIEIVKKQIGDTPILLLDDVLSELDSSRQNYLLNSIHNIQTIMTCTGLDEFINNRFN 345


>gi|153854252|ref|ZP_01995551.1| hypothetical protein DORLON_01545 [Dorea longicatena DSM 13814]
 gi|149753027|gb|EDM62958.1| hypothetical protein DORLON_01545 [Dorea longicatena DSM 13814]
          Length = 374

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 162/358 (45%), Gaps = 30/358 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  FRNY  L + FD    IF G+N  GKTNILEA+      +  R +   D+
Sbjct: 12  LKVNSLKLKNFRNYDLLNVEFDGSTNIFYGNNAQGKTNILEAVYLSGTTKSHRGSKDRDM 71

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   S   T     G+    D+ +K       S + + IN + IR   EL   + + 
Sbjct: 72  IRFGEDESHIETVVEKNGISYQIDMHLK-----KNSPKGIAINKMPIRKASELFGIVNLV 126

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFD 179
           +  P    I      ERRRF+D  +  +D  +   + ++ R++  RN LL E    G  D
Sbjct: 127 FFSPEDLNIIKNGPAERRRFIDLELSQLDKVYLNNLSNYNRIVNQRNHLLKELSFGGKKD 186

Query: 180 SSWCSSI-EAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENFPHIKLSLTGFLD 233
            S    I E QM + G ++   R E +  ++ +I +  Q     KE+   I    TG  D
Sbjct: 187 LSDTLEIWELQMVQYGERLIARRKEFVEQINGIIAKIHQRLTGGKESLKIIYEPSTG--D 244

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             F+Q+    +E            D   + T +GPHR D+     D  I   +GS G+Q+
Sbjct: 245 LPFEQALNRYRER-----------DLRMKSTTVGPHRDDIGFLIGDMDIR-KYGSQGQQR 292

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
              + + L+   L+   T   PILLLD++ + LD+ ++N L   + DI + I  TG +
Sbjct: 293 TAALSLKLSEIELVKLATHDTPILLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVE 350


>gi|225570328|ref|ZP_03779353.1| hypothetical protein CLOHYLEM_06425 [Clostridium hylemonae DSM
           15053]
 gi|225160860|gb|EEG73479.1| hypothetical protein CLOHYLEM_06425 [Clostridium hylemonae DSM
           15053]
          Length = 361

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 163/354 (46%), Gaps = 18/354 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK L +  FRNY  L+L FD    IF GDN  GKTNILE++      +  R     D+
Sbjct: 1   MKIKSLKLKSFRNYDFLKLEFDNATNIFYGDNAQGKTNILESVYLSGTTKSHRGTKDRDL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G   S   T     G+    D+ +K       S + + IN + IR   EL   + I 
Sbjct: 61  VQFGKEESHIETVVEKNGITYQIDMHLK-----KNSPKGIAINKIPIRKASELFGIINIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    I      ERRRF+D  +  +D  +   + ++ R++  RN LL +     +  
Sbjct: 116 FFSPEDLNIIKNGPSERRRFIDLELSQLDKVYLNNLSNYNRIVNQRNHLLKDITQQRNLM 175

Query: 184 SSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            ++   E Q+ + G KI   R + +  ++ +I    +K      +++L       ++ S 
Sbjct: 176 ETLDVWEIQLIQYGNKIIERRKQFVKEINKIISNIHKKLTGEKEEINLI------YEPSV 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L  E A  L   R+ D   + T +GPHR D+     D  I    GS G+Q+   + + 
Sbjct: 230 GNLTFEQA--LAKNRERDMRIKSTSVGPHRDDICFMVGDLDIR-RFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           L+   L+  +    P+LLLD++ + LD+ ++N L   + DI + I  TG D+ V
Sbjct: 287 LSEIELVKQSIHDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVDEFV 340


>gi|160893408|ref|ZP_02074193.1| hypothetical protein CLOL250_00957 [Clostridium sp. L2-50]
 gi|156864803|gb|EDO58234.1| hypothetical protein CLOL250_00957 [Clostridium sp. L2-50]
          Length = 360

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 169/352 (48%), Gaps = 24/352 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ LNI+ +RNY  L + FD    I  GDN  GKTNILE+I   +  +  R +   ++ +
Sbjct: 3   VESLNINNYRNYDELFITFDKNTNILYGDNAQGKTNILESIYMAATTKSHRGSKDREIIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           IG        + +      +DIS  I +  R +++ + + I+ + IR   EL   L + +
Sbjct: 63  IGEEE-----SHIRLCIKKSDISHRIDMHLRKNKN-KGVAIDGLPIRRTTELFGLLNVIF 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    I      ERRRFLD  +  +   + + +  + +++  RN LL +  ++ S   
Sbjct: 117 FSPEDLSIIKNGPSERRRFLDLELCQLSRLYYQNLSSYSKILNQRNNLLKQIVYNKSLMD 176

Query: 185 SIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           +++    Q+ + G K+   R   I  L++LI E   K      KL +       +D++  
Sbjct: 177 TLDVWNIQLVDYGKKVIKERQNFIMMLNNLIGEIHSKLTSGKEKLEII------YDKNVS 230

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI--VDYCDKAITIAHGSTGEQKVVLVGI 299
             ++E+ K L D   +D     T  GPHR D++  ++  D       GS G+Q+ V + +
Sbjct: 231 --EDEFEKVLADKVHVDLNYMSTQTGPHRDDIMFMINGIDAR---RFGSQGQQRTVALSL 285

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            +A  +L+ N     PILLLD++ + LD  +R AL   + DI + I  TG D
Sbjct: 286 KIAEIKLVKNIINDNPILLLDDVMSELDSSRREALLEEIKDIQTIITCTGYD 337


>gi|183219430|ref|YP_001837426.1| DNA replication and repair protein RecF [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189909576|ref|YP_001961131.1| recombinational DNA repair ATPase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|226737810|sp|B0S909|RECF_LEPBA RecName: Full=DNA replication and repair protein recF
 gi|226737811|sp|B0SK33|RECF_LEPBP RecName: Full=DNA replication and repair protein recF
 gi|167774252|gb|ABZ92553.1| Recombinational DNA repair ATPase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777852|gb|ABZ96150.1| DNA replication and repair protein RecF [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 367

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 167/348 (47%), Gaps = 17/348 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + I  FRN+   +L F ++   F+G+NG GKTN+LE+IS LS  + FR +    + R
Sbjct: 3   LKKIYIKNFRNHEETQLTFKSRLVFFIGNNGEGKTNLLESISLLSYLKSFRESDQNQLLR 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              S +F       EG E L +  I+         + L++N    + + +   + R   +
Sbjct: 63  WDTSDTFIRAEFESEGNEYLFEYGIE---HSQTKRKKLKVNGEEFKKISDYVGYFRSIVM 119

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I    ++ERRRFLD  + + +  + +++I++ERL++ RN  L +          
Sbjct: 120 SPPDILIIEDGNVERRRFLDAFISSTNRYYLKQLIEYERLIKQRNAALKKENASDREIGI 179

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCAL 243
            +  + E   +I   R + I +L+           F    L L+   D  F   +     
Sbjct: 180 WDEPIIEHDSEIREIRTKTIQSLAGY---------FHQNLLQLSSGKDPYFLTYKPNITS 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KEE+ +KL D  + D     T  G HR  L + + DK ++   GS G+++  ++ +  A 
Sbjct: 231 KEEHKQKLIDNLRKDKAIGYTSCGNHRDTLPIGFDDKDLS-GFGSQGQKRSAVIALKTAC 289

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            ++I +TTG AP+LL+D+I   LD  +R     ++++ G Q F T TD
Sbjct: 290 FQMIRDTTGEAPVLLIDDIIRELDVKRREYFVNLISECG-QAFFTTTD 336


>gi|126697570|ref|YP_001086467.1| DNA replication and repair protein [Clostridium difficile 630]
 gi|254977346|ref|ZP_05273818.1| DNA replication and repair protein [Clostridium difficile
           QCD-66c26]
 gi|255094676|ref|ZP_05324154.1| DNA replication and repair protein [Clostridium difficile CIP
           107932]
 gi|255102903|ref|ZP_05331880.1| DNA replication and repair protein [Clostridium difficile
           QCD-63q42]
 gi|255308723|ref|ZP_05352894.1| DNA replication and repair protein [Clostridium difficile ATCC
           43255]
 gi|255316430|ref|ZP_05358013.1| DNA replication and repair protein [Clostridium difficile
           QCD-76w55]
 gi|255519090|ref|ZP_05386766.1| DNA replication and repair protein [Clostridium difficile
           QCD-97b34]
 gi|255652273|ref|ZP_05399175.1| DNA replication and repair protein [Clostridium difficile
           QCD-37x79]
 gi|260681773|ref|YP_003213058.1| DNA replication and repair protein [Clostridium difficile CD196]
 gi|306521987|ref|ZP_07408334.1| DNA replication and repair protein [Clostridium difficile
           QCD-32g58]
 gi|123363673|sp|Q18C86|RECF_CLOD6 RecName: Full=DNA replication and repair protein recF
 gi|115249007|emb|CAJ66818.1| DNA replication and repair protein RecF [Clostridium difficile]
 gi|260207936|emb|CBA60047.1| DNA replication and repair protein [Clostridium difficile CD196]
          Length = 371

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 177/364 (48%), Gaps = 17/364 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  FRNY  L L F+ +  + VG NG GKTNI+E+I  LS G+ FR     ++
Sbjct: 1   MKLKSLQLVNFRNYKKLHLEFNGKVNLLVGKNGQGKTNIVESIYMLSFGKSFRTNKDKEM 60

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R  S + +   +F++      L ++ I    +D + +R   IN V ++ + EL  +L +
Sbjct: 61  VRFNSENLYIGGSFSKYNKY-SLIELII---GKDKKGIR---INKVPLQKIQELLGNLNV 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
               P   R+      ERR F+D+ +  I P++ + + ++ + +  R+R+L   + D + 
Sbjct: 114 VIFSPEDLRLVKEGPKERRAFIDKEISQIIPKYYKYLTNYNKTLSQRSRVLKNIHVDEAL 173

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               +  +A+ G  I I R + I  ++++   M          + +     ++   + + 
Sbjct: 174 LDVYDDTLAKYGSYIYILRRDFIKKIANISENMHMNLTNGVERLSIRYKNQINITDEDTI 233

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +  ++  KL   R  D  S+ T  G H+ DL + + +       GS G+Q+   + + 
Sbjct: 234 DTVYNKFLAKLSSNRPNDIESKTTRYGIHKDDLNI-FINDLDARLFGSQGQQRTASISLK 292

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KSVFDS 357
           L+   LI N     P+L+LD++ + LDE ++  L   ++++  Q+F+T  +   K +FD 
Sbjct: 293 LSEIELIKNEVEEYPVLILDDVFSELDEARQKLLVNNLSNV--QMFITSAEVSHKKIFDE 350

Query: 358 LNET 361
            N T
Sbjct: 351 KNVT 354


>gi|255657642|ref|ZP_05403051.1| DNA replication and repair protein [Clostridium difficile
           QCD-23m63]
 gi|296452677|ref|ZP_06894368.1| recombination protein F [Clostridium difficile NAP08]
 gi|296880070|ref|ZP_06904039.1| recombination protein F [Clostridium difficile NAP07]
 gi|296258459|gb|EFH05363.1| recombination protein F [Clostridium difficile NAP08]
 gi|296428937|gb|EFH14815.1| recombination protein F [Clostridium difficile NAP07]
          Length = 371

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 176/364 (48%), Gaps = 17/364 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  FRNY  L L F+ +  + VG NG GKTNI+E+I  LS G+ FR     ++
Sbjct: 1   MKLKSLQLVNFRNYKKLHLEFNGKVNLLVGKNGQGKTNIVESIYMLSFGKSFRTNKDKEM 60

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R  S + +   +F++      L ++ I    +D + +R   +N V ++ + EL  +L +
Sbjct: 61  VRFNSENLYIGGSFSKYNKY-SLIELII---GKDKKGIR---VNKVPLQKIQELLGNLNV 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
               P   R+      ERR F+D+ +  I P++ + + ++ + +  R+R+L   + D + 
Sbjct: 114 VIFSPEDLRLVKEGPKERRTFIDKEISQIIPKYYKYLTNYNKTLSQRSRVLKSIHVDEAL 173

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               +  +A  G  I I R + I  ++S+   M          + +     ++   + + 
Sbjct: 174 LDVYDDTLARYGSYIYILRRDFIKKIASISENMHMNLTNGVERLSIRYKNQINITDEDTI 233

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +  ++  KL   R  D  S+ T  G H+ DL + + +       GS G+Q+   + + 
Sbjct: 234 DTVYNKFLAKLSSNRPNDIESKTTRYGIHKDDLNI-FINDLDARLFGSQGQQRTASISLK 292

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KSVFDS 357
           L+   LI N     P+L+LD++ + LDE ++  L   ++++  Q+F+T  +   K +FD 
Sbjct: 293 LSEIELIKNEVEEYPVLILDDVFSELDEARQKLLVNNLSNV--QMFITSAEISHKKIFDE 350

Query: 358 LNET 361
            N T
Sbjct: 351 KNVT 354


>gi|45655917|ref|YP_000003.1| DNA repair and genetic recombination protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|51316280|sp|Q72WD4|RECF_LEPIC RecName: Full=DNA replication and repair protein recF
 gi|45599150|gb|AAS68640.1| DNA repair and genetic recombination protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 365

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 166/348 (47%), Gaps = 17/348 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  FRN+  L L FD++   FVGDNG GKTN+LEAI  LS  + FR +  +++ R
Sbjct: 3   LKHLTIQNFRNHEELSLDFDSRLIFFVGDNGEGKTNLLEAICILSWLKSFRESEDSNLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWL 125
            GS ++   F R +    L +  +++      SV R L+ N   I+   +L        L
Sbjct: 63  WGSENY---FLRGKIKNNLKESVLEIGFTSKPSVKRKLKFNQEEIKKRTDLIGKFITVLL 119

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   +I  G   ERR+F+D  + + DP +   ++++ ++++ RN LL  G  D S  S 
Sbjct: 120 TPMDLKIIEGGPAERRKFIDAFISSFDPFYLEFLLEYNKILKHRNALLKSGNLDISHLSI 179

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG--KFDQSFCAL 243
            + ++ E G+ I   R E++  L+S     + K         L+G  DG     +     
Sbjct: 180 WDKKIVEKGIFILNKRREVVLELNSFYRVNLDK---------LSGGKDGLELIYKPNVKD 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++E+ +KL      D     T +G HR DL +    + IT   GS G+++  ++ +  A 
Sbjct: 231 QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIGTDQRDIT-EFGSQGQKRSTVIALKAAT 289

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
                +     P+LL+D++   LD  +R     +V   G Q F T TD
Sbjct: 290 FNYYKDILNTIPVLLIDDVIRELDVKRREYFVDLVVTAG-QAFFTTTD 336


>gi|150014896|ref|YP_001307150.1| recombination protein F [Clostridium beijerinckii NCIMB 8052]
 gi|189039620|sp|A6LPB4|RECF_CLOB8 RecName: Full=DNA replication and repair protein recF
 gi|149901361|gb|ABR32194.1| DNA replication and repair protein RecF [Clostridium beijerinckii
           NCIMB 8052]
          Length = 367

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 173/373 (46%), Gaps = 20/373 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +N+  +RNY  L +       +FVGDN  GKTNILE++ + +  +  R +   ++  
Sbjct: 3   VKNINLLNYRNYKKLSVELTENVNVFVGDNAQGKTNILESVYYCAFAKSHRTSKDKELIN 62

Query: 67  I-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              S ++ S       ++   DI+I    RD +  + +++N++ +  + EL     +   
Sbjct: 63  WENSTAYISLLIGKNRLDKKIDINI---LRDGK--KAIKVNNIKVNKIGELFGIFNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   ++       RRR LD  +  ++P +   ++ + +++  RN LL    F       
Sbjct: 118 SPEDLKVIKEAPSLRRRLLDMELSQVNPNYYFNLVQYNKVLGERNILLKSRSFSEDILDV 177

Query: 186 IEAQMAELGVKINIARVEMINALS---SLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240
            + Q+++    I   R+E IN ++    +I   +   KE             +GKF    
Sbjct: 178 YDIQLSKYADYIISKRLEYINKINFYGDIIHREITSGKEEINFKYNCTVNLENGKF---- 233

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              K+ Y KKL D  + D     T +GPHR D  V + +   T   GS G+Q+  ++ + 
Sbjct: 234 ---KDNYLKKLKDNIQKDREKGLTSVGPHRDDFSV-FINNIDTKIFGSQGQQRTSILTMK 289

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            A  ++I   TG  P+LLLD++ + LD +++  + R + DI + I   G +  + D L++
Sbjct: 290 FASLKIIREITGEYPVLLLDDVLSELDLNRKKYILRSIKDIQTIITCAGIE-DLNDYLDD 348

Query: 361 TAKFMRISNHQAL 373
             K   +SN Q L
Sbjct: 349 KVKIFNVSNGQIL 361


>gi|332798027|ref|YP_004459526.1| DNA replication and repair protein recF [Tepidanaerobacter sp. Re1]
 gi|332695762|gb|AEE90219.1| DNA replication and repair protein recF [Tepidanaerobacter sp. Re1]
          Length = 364

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 165/361 (45%), Gaps = 44/361 (12%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN+  L L F     IF GDN  GKTN+LEAI F++  R  R     +V R   
Sbjct: 6   LRLYDFRNFLELDLEFKNGINIFYGDNAQGKTNLLEAIYFITELRATRAFREQEVIRYDQ 65

Query: 70  P-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           P       FST A         DI        DR V   +     ++  +  NK  R S 
Sbjct: 66  PLAFLKGLFSTKA--------GDI--------DRQVTIYRNQKKEVKEGE--NKKSRWSE 107

Query: 125 LVPSMDRIF---------SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L PS+  ++          G    RRRF+D +++ I P   + +  ++R++  RN LL  
Sbjct: 108 LDPSISAVYFSPEDIDLVKGEPSLRRRFIDNLIYRIRPSFYKYLQGYQRVLTQRNTLLKT 167

Query: 176 GYFDSSWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                    +++    Q++ELG ++   R++M+  +SSL  +Y +   F H +  L    
Sbjct: 168 IKIKPGMTKTLDPWDEQLSELGSQLINERLKMLQRISSLSQDYFK--TFTHKRNDLRISY 225

Query: 233 DGKFDQSFCAL-KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTG 290
             + D S   L K +Y  KL   R+ D     T +GPHR D  +D+      I H  S G
Sbjct: 226 RSEIDFSNPELIKADYKNKLILNREKDINRSFTSVGPHRDD--IDFFIDGKNIKHYASQG 283

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q++ ++ +  A   L+    G  PILLLD++ + LD  +R     I+     Q+F+T T
Sbjct: 284 QQRLTVLCLMFAQRNLLYTEKGEYPILLLDDVMSELDIHRRQL---ILGQENHQVFITTT 340

Query: 351 D 351
           D
Sbjct: 341 D 341


>gi|125974859|ref|YP_001038769.1| DNA replication and repair protein RecF [Clostridium thermocellum
           ATCC 27405]
 gi|256003885|ref|ZP_05428872.1| DNA replication and repair protein RecF [Clostridium thermocellum
           DSM 2360]
 gi|281418686|ref|ZP_06249705.1| DNA replication and repair protein RecF [Clostridium thermocellum
           JW20]
 gi|166220707|sp|A3DHZ7|RECF_CLOTH RecName: Full=DNA replication and repair protein recF
 gi|125715084|gb|ABN53576.1| DNA replication and repair protein RecF [Clostridium thermocellum
           ATCC 27405]
 gi|255992223|gb|EEU02318.1| DNA replication and repair protein RecF [Clostridium thermocellum
           DSM 2360]
 gi|281407770|gb|EFB38029.1| DNA replication and repair protein RecF [Clostridium thermocellum
           JW20]
 gi|316939070|gb|ADU73104.1| DNA replication and repair protein RecF [Clostridium thermocellum
           DSM 1313]
          Length = 369

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 167/360 (46%), Gaps = 26/360 (7%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FRNY    + F     I  G N  GKTNI+EA+   + GR  R +   ++  I    
Sbjct: 8   LKNFRNYKDETIKFSKNLNIIYGQNAQGKTNIIEAVFLCASGRSHRTSKDTELVNIDGTG 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
            FS    +E  EG   I I  E    + V+   IN++ ++ +  L  +L      P    
Sbjct: 68  -FSVLLDLESSEGRKKIEIDYECGKKKVVK---INEIPLKKIGNLMGNLLAVIFSPEDIL 123

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA--- 188
           I      ERRRF+D  +  + P +   +  + +++  RN LL E  +  +   ++E    
Sbjct: 124 IIKEGPSERRRFIDITLCQLKPSYFYDLQQYNKVLSQRNMLLKEIQYKRNLLDTLEVWDY 183

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSF------- 240
           +MAEL  +I   R E I  L  +  +        H+KL+  +  ++ K+  S        
Sbjct: 184 KMAELSSRIMTTRSEFIKRLCEISKKI-------HLKLTDGSEIMEIKYSPSVDLHDLSN 236

Query: 241 -CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +K E+ ++L   R ++     TLIGPHR D  ++     + +  GS G+Q+  L+ +
Sbjct: 237 PSEIKNEFIRQLNSIRDIELKRCVTLIGPHRDDYEMELNGLNLKM-FGSQGQQRTSLLSL 295

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   +I + T   P+LLLD++ + LD  +R  L   + ++  Q F+T TDK +F++ N
Sbjct: 296 KLAEIEIIKSETDEDPVLLLDDVMSELDFKRREFLLENIRNV--QTFITCTDKELFENRN 353


>gi|163849398|ref|YP_001637442.1| DNA replication and repair protein RecF [Chloroflexus aurantiacus
           J-10-fl]
 gi|222527396|ref|YP_002571867.1| DNA replication and repair protein RecF [Chloroflexus sp. Y-400-fl]
 gi|189039618|sp|A9WDD4|RECF_CHLAA RecName: Full=DNA replication and repair protein recF
 gi|254790468|sp|B9LH68|RECF_CHLSY RecName: Full=DNA replication and repair protein recF
 gi|163670687|gb|ABY37053.1| DNA replication and repair protein RecF [Chloroflexus aurantiacus
           J-10-fl]
 gi|222451275|gb|ACM55541.1| DNA replication and repair protein RecF [Chloroflexus sp. Y-400-fl]
          Length = 392

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 175/377 (46%), Gaps = 32/377 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L + +FRNY  L L      T+F G N  GKT++LEAI +L+  R  R +S  ++ R
Sbjct: 3   VHHLFLRDFRNYRRLDLALAPATTLFYGPNAAGKTSLLEAIFYLATTRSPRLSSDRELVR 62

Query: 67  ------IGSPSFFSTFARVEGMEGLADISIKLETRDDR-------SVRCLQINDVVIRVV 113
                  G+P F    A VE   G   + + ++ R D        + + ++I+    R +
Sbjct: 63  WDAVGEAGTPPFARIAADVERRIGPVRLEVLVQRRADDDGQPLNGAQKLVRIDKRPARAI 122

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           D L   LR+    P+   +  G   ERRR+LD  +  +DP + R +  +++++  RN LL
Sbjct: 123 D-LIGQLRVVLFTPTDLTLVDGPPAERRRYLDITLSQLDPHYVRTLAHYQKILLQRNSLL 181

Query: 174 --------TEGYFDSS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
                      + D+    W   + A    L  +   A VE+ +    L  E    E+  
Sbjct: 182 RAWREQRRVPRHVDAELAYWDQELAAAGGYLLAERLRAIVELNDLAGPLYQEMSGGEDRL 241

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKA 281
            I+ + +  L    D    A +   A   F  ++ D ++R +TL GPHR DLI  +    
Sbjct: 242 QIEYAASCDLGTARDAGGLAERLLLA---FAAQRSDELARGQTLCGPHRDDLI--FTVAG 296

Query: 282 ITIA-HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
           I +  +GS G+Q+ + + + +  A L+   +G AP+LLLD++ + LD  +R  L  ++  
Sbjct: 297 INLGRYGSRGQQRSIALALKIGEAGLMRRRSGEAPVLLLDDVLSELDAQRRAHLLALIHH 356

Query: 341 IGSQIFMTGTDKSVFDS 357
              Q  +T TD S F +
Sbjct: 357 PDQQTLLTATDLSDFSA 373


>gi|257871392|ref|ZP_05651045.1| recombination protein F [Enterococcus gallinarum EG2]
 gi|257805556|gb|EEV34378.1| recombination protein F [Enterococcus gallinarum EG2]
          Length = 370

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 167/355 (47%), Gaps = 20/355 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L ++ +RNY SL L FD    IF+G+N  GKTN+LE+I  L+  +  R  S  ++
Sbjct: 1   MRLNNLQLNNYRNYESLELSFDKNLVIFLGENAQGKTNVLESIYVLAMTKSHRTTSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +       A+V G       +I LE    +  R  ++N +  + +      L +  
Sbjct: 61  IRWDTAG-----AQVSGAVSRGHSTIPLELFLTKKGRKTKVNHIEQKKLSSYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180
             P    +  G    RR+F+D  +  IDP +   ++ ++ +++ RN+ L + +     D 
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLFEKKQNDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENFPHIKLSLTGFLDGK 235
            + + +  Q+ E G KI  AR   +  L+    +  Q     KE      LS  G +   
Sbjct: 176 LYLTVLTEQLIEFGSKIIFARQRFVKRLAFWANQLHQKISDEKEVLQIEYLSSVGTVSAS 235

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            +Q    +++++   L   +  + M + +L+GPHR DL     D+ +    GS G+Q+  
Sbjct: 236 LEQ----VQQQFKDALDQVKTREKMRQISLVGPHRDDLNFLINDRNVQ-TFGSQGQQRTT 290

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            + + LA   L+   TG  P+LLLD++ + LD+ ++  L   + +   Q F+T T
Sbjct: 291 ALSVKLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETI-EGKVQTFITTT 344


>gi|167770841|ref|ZP_02442894.1| hypothetical protein ANACOL_02194 [Anaerotruncus colihominis DSM
           17241]
 gi|167666881|gb|EDS11011.1| hypothetical protein ANACOL_02194 [Anaerotruncus colihominis DSM
           17241]
          Length = 379

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 167/369 (45%), Gaps = 32/369 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  + I++FRN ASL L       +  GDNG GKTN +EA+   +  + FR A  A +
Sbjct: 1   MRIDRIRITDFRNIASLELALCPGANVIYGDNGQGKTNFIEAVWMCTGAKSFRGAKDAQL 60

Query: 65  TRIGSP------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            R G+P       F++      G E  A ++I  E R     R   +N+V ++   EL  
Sbjct: 61  VRFGAPQAAVEAGFYAA-----GREQKALLTI--EKR-----RAAALNEVPLKSAAELAG 108

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
                   P+   +      E+RRF+D  +  I P++   +  + R++  RNRLL +  +
Sbjct: 109 QFCAVVFSPAHLTLVKNGPQEKRRFIDTSICQIKPKYIHVLNQYTRVLDQRNRLLKDIMY 168

Query: 179 DSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTG 230
           ++S   ++   +A++A  G  +   R   +  L+    E        +E F         
Sbjct: 169 ETSLFDTLDIWDARLAAYGAVVIKTRATFLERLAPCAQEIYGGLAGGREKFGARYAPSLA 228

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
              G    S   +++   + L   R  D  +R T  GPHR D+ +   D     A GS G
Sbjct: 229 VDPGA---SMSEIEQRALEDLRVHRGEDIRTRMTGAGPHRDDIDLTL-DGQSARAFGSQG 284

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ + LA   LI  T G  P++LLD++ + LD  +R+ L   +   G QI MT  
Sbjct: 285 QQRSCVLALKLAECELIRETRGEYPVVLLDDVMSELDAARRDYLLNHLQ--GRQIIMTSC 342

Query: 351 DKSVFDSLN 359
           D S F  L+
Sbjct: 343 DGSDFKGLS 351


>gi|325567638|ref|ZP_08144305.1| recombination protein F [Enterococcus casseliflavus ATCC 12755]
 gi|325159071|gb|EGC71217.1| recombination protein F [Enterococcus casseliflavus ATCC 12755]
          Length = 370

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 171/371 (46%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++S +RNY SL L F+    IF+G+N  GKTNILE+I  L+  +  R +S  ++
Sbjct: 1   MRLNELHLSNYRNYDSLTLTFEKGLVIFLGENAQGKTNILESIYVLAMTKSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +       AR+ G       +I LE    +  R  ++N +  + +      L +  
Sbjct: 61  IRWDTEG-----ARISGSVSRGRSTIPLELFLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  IDP +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQVRRKFLDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLNEKKQTDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQ 238
            +   +  Q+   G KI +AR   +  L+    +  QK  +    +++     + G+   
Sbjct: 176 IYLDVLTEQLVAFGSKIILARQRFVQRLAYWANQLHQKISQGKETLQIDYLSNVPGEAT- 234

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   +++++ K L   +  +   + TL GPHR DL     +K +    GS G+Q+   + 
Sbjct: 235 SLEEIQQQFVKALAQVKDRERFRQVTLAGPHRDDLDFLINEKNVQ-TFGSQGQQRTTALS 293

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA   L+   TG  P+LLLD++ + LD+ ++  L   +         T T + V D +
Sbjct: 294 VKLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGKVQTFLTTTTLEHVKDKM 353

Query: 359 NETAKFMRISN 369
           +  A+   +  
Sbjct: 354 SVEAEIFYVEQ 364


>gi|291548765|emb|CBL25027.1| recF protein [Ruminococcus torques L2-14]
          Length = 363

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 161/358 (44%), Gaps = 28/358 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L L FD +  I  GDN  GKTNILEA+      +  R     D+ +
Sbjct: 3   IKSLKLKNYRNYDLLDLTFDPKTNILYGDNAQGKTNILEALYLSGTTKSHRGTKDRDMIQ 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   S   T    +G+    D+ +K       S + + I+ V IR   EL   +   + 
Sbjct: 63  FGYDESHLETVVEKKGIIFQIDMHLK-----KNSPKGIAIDKVPIRRASELFGIVHFVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS---- 181
            P    I       RRRF+D  +  +D  +   + ++ R++  RN LL + Y  +     
Sbjct: 118 SPEDLNIIKEGPAGRRRFIDLELSQLDKIYLNNLSNYNRIINQRNSLLKDIYGSNQQHLL 177

Query: 182 -----WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                W    + Q+A  G K+   R E +  ++ +I E   +      +LSLT      +
Sbjct: 178 ETLDIW----DMQLAAYGTKVLDRRKEFVRQVNEIISEIHFRLTGGKERLSLT------Y 227

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           + S   +  E A K    R+ D   + T +GPHR DL     D  I    GS G+Q+   
Sbjct: 228 ESSIGEMSMEQALK--KNRERDLRMKSTSVGPHRDDLCFLSGDLDIR-KFGSQGQQRTAA 284

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           + + LA   L+    G  PILLLD++ + LD++++N L   + DI + I  TG D+ V
Sbjct: 285 LSLKLAEIELVKRIIGDTPILLLDDVLSELDKNRQNYLLDSIHDIQTVITCTGLDEFV 342


>gi|304439075|ref|ZP_07398994.1| recombination protein F [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372434|gb|EFM26021.1| recombination protein F [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 361

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 176/366 (48%), Gaps = 13/366 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  FRNY  L+L+      +FVG N  GKTN++E+I+    G  FR +  A++
Sbjct: 1   MKLKSLQLINFRNYEDLKLIPSETLNLFVGKNAQGKTNLIESIAVSISGSSFRTSKNAEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             +G+ S  +  + +E    L   SI +    D S     IN  +  + D   K      
Sbjct: 61  IELGNKS-SNIISEIEKKGRLEKRSIYI----DSSGIKHSINGKITTLKD-FTKSSAAVI 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    I      +RRR+LD ++  +D  +R  +  +++++  +N+ L     D +   
Sbjct: 115 FKPDDLYIIKNSPSDRRRYLDDIISNLDSIYRYNLNSYKKVLYEKNKALKVNNND-TLLD 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+++   +I I R+ +I  L S   EY +  +    K++    ++ K  ++   L 
Sbjct: 174 IYDRQLSKFASEILIKRLNIIKILESYAKEYYKTLSGCDFKITYLSTINLK--KTREELV 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           EE+   L   R +D     T IGPHR D+     DK++    GS GE +  ++ + LA  
Sbjct: 232 EEFLNALRSRRHIDKRKLYTSIGPHRDDIDFKINDKSVK-NFGSQGEIRSSILVLKLAEL 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNETAK 363
           + I N     P+LLLD++ + LD  +R+AL   +   G Q F+T T+  + DS +++ +K
Sbjct: 291 KYILNVLNITPVLLLDDVLSELDSTRRDALLTSIE--GIQTFITSTNSEIIDSYIDDNSK 348

Query: 364 FMRISN 369
              I N
Sbjct: 349 VFMIEN 354


>gi|163790922|ref|ZP_02185345.1| recombination protein F [Carnobacterium sp. AT7]
 gi|159873764|gb|EDP67845.1| recombination protein F [Carnobacterium sp. AT7]
          Length = 373

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 175/381 (45%), Gaps = 32/381 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++S +RNY    ++F     +F+G+N  GKT+++EAI  L+  R  R A+  +  R
Sbjct: 3   LKEIHLSNYRNYEHAEVIFSKGINVFLGENAQGKTSLMEAIYVLAMARSHRTANDKETIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   FARV G     + S  LE    +  +  + N +  + + E   +L +    
Sbjct: 63  -----WDQDFARVSGRIQKKNTSFPLEISISKKGKKAKFNHLEQKKLSEYIGNLNVILFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182
           P    +  G    RR+FLD  +  + P +   ++ ++ L++ RN  L +       D ++
Sbjct: 118 PEDLSLVKGSPSVRRKFLDMEMGQMSPIYLHHLVQYQHLLKQRNSYLKQLSLKKEKDLTF 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              +  Q+AE G  I + R   +  L +   + V  E     +L   G+         C+
Sbjct: 178 LDILTEQLAEYGAAILLERFSFVKKLENW-AKPVHSEISKQKELLEIGYA--------CS 228

Query: 243 LK---EEYAKKLF--------DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           LK   E   ++L+         GR+ +   R T+ GPHR DL      + +   +GS G+
Sbjct: 229 LKITDETSKEQLYSDLMNAFAQGRQRELEQRTTIFGPHRDDLKFTVNGRNVQ-TYGSQGQ 287

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           Q+   + + LA   L+   TG  P+LLLD++ + LD++++  L + + +   Q F+T T 
Sbjct: 288 QRTTALSVKLAEIDLMKEMTGEYPVLLLDDVLSELDDERQTHLLKAIQN-KVQTFLTTTS 346

Query: 352 -KSVFDSLNETAKFMRISNHQ 371
              +  ++ ET K   I N Q
Sbjct: 347 LDGIKKNMLETPKIFLIDNGQ 367


>gi|325288204|ref|YP_004264385.1| DNA replication and repair protein RecF [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963605|gb|ADY54384.1| DNA replication and repair protein RecF [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 366

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 166/364 (45%), Gaps = 15/364 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L    FRNY+   + F     I VG NG GKTN+LE I +L  G+ +R    +++  
Sbjct: 3   IHNLYFKNFRNYSEQEITFTNGINILVGSNGQGKTNVLEGIYYLLMGKSYRVNQESELIY 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  +F+   A  E  E        LE+  ++  + ++IN +  + + E    + + +  
Sbjct: 63  WGQKNFYLR-ANFEAYER----KYCLESYYEKGKKAIKINQLACQKLSEYVGMINVVFFT 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    I     +ERRRF+D ++  + P H   +  + R+++ ++ LL      ++    +
Sbjct: 118 PDDLNIIKSGPLERRRFIDLLLIQVKPAHISLLNTYIRILKQKSILLKRSLNKAAANDQL 177

Query: 187 ---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--FDQSFC 241
                Q+ E G ++   R EM   L +   +   K    H  + L     G+   D++  
Sbjct: 178 LVWNEQLLETGSRVIRNRYEMTEKLQNQCGKMFSKVFGCHENMDLQYVSLGRKSLDEALA 237

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
              E   K+    R  +   R  L+GPHR D+IV+   ++    + S G+Q+ +++ + L
Sbjct: 238 YFPEALEKQ----RDAEIERRAVLVGPHRDDIIVNINGRSARY-YASQGQQRSLVLCLKL 292

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           A   +I+      PILLLD++ + LDE +R  L   +++   Q  +T TD    +   + 
Sbjct: 293 AEMEIINKEKEEYPILLLDDVLSELDEGRREYLMEYISNSNKQTMITTTDLGQIEKQKDP 352

Query: 362 AKFM 365
           A ++
Sbjct: 353 AVYI 356


>gi|166032887|ref|ZP_02235716.1| hypothetical protein DORFOR_02608 [Dorea formicigenerans ATCC
           27755]
 gi|166027244|gb|EDR46001.1| hypothetical protein DORFOR_02608 [Dorea formicigenerans ATCC
           27755]
          Length = 361

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 170/379 (44%), Gaps = 31/379 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK L +  FRNY  L L FD    IF GDN  GKTNILEA+      +  R +   D+
Sbjct: 1   MKIKSLKLKNFRNYELLNLEFDDSTNIFYGDNAQGKTNILEAVYLSGTTKSHRGSKDRDM 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+  S         G++   D+ +K         + + IN + IR   EL   + + 
Sbjct: 61  IRFGAEESHIEVIVEKRGIQDQIDMHLK-----KNRPKGVAINKIPIRKAGELFGIVNLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    I       RR+F+D  +  +D  +   + ++ R++  RN LL +  +     
Sbjct: 116 FFSPEDLNIIKNGPAGRRKFIDLELSQLDKVYFNHLSNYSRVVNQRNHLLKDSAYRQDAM 175

Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK----- 235
            +++    Q+ + G  I   R + ++ ++ ++           I   LTG   GK     
Sbjct: 176 ETLDIWDLQLVQYGNAIIARRKQFVDEMNEIV---------SGIHKKLTG---GKEEIRL 223

Query: 236 -FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            ++ S   +  E A ++   R+ D   + T +GPHR D+     +  I    GS G+Q+ 
Sbjct: 224 IYEPSTKNMSLEQALEM--NRQRDIRMKSTSVGPHRDDVCFMVGNLDIR-RFGSQGQQRT 280

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
             + + LA   L+   TG  P+LLLD++ + LD+ ++N L   + DI + I  TG D+ V
Sbjct: 281 AALSLKLAEIELVKRVTGDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVDEFV 340

Query: 355 FDSLNETAKFMRISNHQAL 373
                E  K   + N Q +
Sbjct: 341 NHRF-EVNKVFHVQNGQVI 358


>gi|67809989|gb|AAY81983.1| recombinase F [Wolbachia pipientis]
          Length = 320

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 157/327 (48%), Gaps = 15/327 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-T 65
           IK L +  FR++++  L  D    +  G NG+GKTNILEAIS L+   G ++A  +++  
Sbjct: 6   IKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAKASEIQN 65

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           R  +  +   +    GM+     SI +    D+  + +QI+         L K   + WL
Sbjct: 66  RFSNEDWVVHYDFFNGMDF---NSIGIAKSFDK--KLIQIDGKTQSSYSSLYKISNVIWL 120

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +P MD +      +R +FLDR+V   +  +    +   +  R R++LL E   D +W SS
Sbjct: 121 IPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLDKNWLSS 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +E  MA   V I   R  ++  L   I  +   E FP   L  +  L      +     E
Sbjct: 181 LENIMAVNAVSILRMRSSVLKTLQDTIDNH-SGELFPKASLKFSSQL------TLDDTAE 233

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVGIFLAHA 304
            +  +L + R+ DS++ R   G H  +  V +C K  + I   STGEQK++L+ I L+  
Sbjct: 234 YFQNRLKENREKDSLTGRVTFGVHNDNFRV-FCQKRNVPINLCSTGEQKLLLLSIILSSV 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKR 331
           +        AP+LLLD+I +HLD+  R
Sbjct: 293 KARCIHYNKAPLLLLDDIMSHLDKHYR 319


>gi|319945993|ref|ZP_08020242.1| recombination protein F [Streptococcus australis ATCC 700641]
 gi|319747801|gb|EFW00046.1| recombination protein F [Streptococcus australis ATCC 700641]
          Length = 362

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 172/374 (45%), Gaps = 24/374 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I +FRNY  + L F +   IF+G N  GKTN+LE+I FL+  R  R  S  D+  
Sbjct: 3   LKSIHIQKFRNYKDVDLQFHSGLNIFLGQNAQGKTNLLESIYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F      V G+      SI LE       R  +IN +    +     ++ +    
Sbjct: 63  FQEEQF-----TVSGILEKKTGSIPLEISLSSKGRVTKINHLKQSKLSTYIGNMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  + P +   +  +  +++ RN  L T    D ++   
Sbjct: 118 PEDLQLVKGSPALRRKFIDIDLGQMKPVYLSDLTAYHHVLKQRNSYLKTATTVDPTFLDV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFCALK 244
           ++ Q+A+ G ++ I R + +  L     EY  +E   H ++S     L  ++D S     
Sbjct: 178 LDEQLADYGSRVCIHRKDFLKKL-----EYFGQEK--HFEISNQAEKLTIRYDSSIPFQD 230

Query: 245 EEYAKKLF-----DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           EE  ++ F     + R  D + + T +GPHR D+     D   T   GS G+ + V++ I
Sbjct: 231 EETLRQTFIILLRENRTKDLIKKTTSVGPHRDDITFYINDMNATF--GSQGQHRSVVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358
            LA   LI + T   PILLLD++ + LD +++  L  +++ DI  Q F+T T       L
Sbjct: 289 KLAEISLIESLTKEKPILLLDDVMSELDNNRQLHLLEVISRDI--QTFITTTTLDHLKDL 346

Query: 359 NETAKFMRISNHQA 372
            E  K   I + Q 
Sbjct: 347 PEDLKIFNIHSGQV 360


>gi|163814984|ref|ZP_02206371.1| hypothetical protein COPEUT_01137 [Coprococcus eutactus ATCC 27759]
 gi|158449667|gb|EDP26662.1| hypothetical protein COPEUT_01137 [Coprococcus eutactus ATCC 27759]
          Length = 369

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 175/382 (45%), Gaps = 33/382 (8%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + I+ + ++ +RNY  L++ F     I  G+N  GKTNILE+I   +  +  R   
Sbjct: 1   MVKDMYIESIELNNYRNYRKLKVEFGKNTNILYGNNAQGKTNILESIYMAATTKSHRGTK 60

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNK 118
             D+ RIG   S    F R        D+S K++    +S  + + I+ + IR   EL  
Sbjct: 61  DRDIIRIGEDESHIRLFLRKR------DVSHKIDMHLRKSKNKGVAIDGIAIRRATELYG 114

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            L + +  P    I      ERRRF+D  +  I   + + +  + +++  RN LL + Y+
Sbjct: 115 LLNVIFFSPEDLSIIKNGPAERRRFMDLELCQISRLYYQNLASYNKILNQRNNLLKQIYY 174

Query: 179 DSSWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
           + S   +++    Q+ + G KI   R   I+ ++ +I +   +      KL +       
Sbjct: 175 NKSLIDTLDVWNIQLVDYGSKIIKERKNFIDMMNDIICDIHSRLTGGREKLEIV------ 228

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQK 293
               +   +  +   L +  + D     T  GPHR D+  +++  D      +GS G+Q+
Sbjct: 229 --YEYNVNENNFEDVLREKLETDLKYSSTQAGPHRDDISFLINGIDAR---KYGSQGQQR 283

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK- 352
            V + + +A  +L+       PILLLD++ + LD D+RNAL   + DI + I  TG D+ 
Sbjct: 284 TVALSLKMAEIKLVKKIISDNPILLLDDVMSELDTDRRNALIDEIKDIQTIITCTGYDEF 343

Query: 353 --------SVFDSLNETAKFMR 366
                   +V+  +N TA  +R
Sbjct: 344 IKEQVIINNVYSVVNGTATRVR 365


>gi|325663386|ref|ZP_08151836.1| hypothetical protein HMPREF0490_02577 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086960|ref|ZP_08336036.1| hypothetical protein HMPREF0987_02339 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470840|gb|EGC74070.1| hypothetical protein HMPREF0490_02577 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330409621|gb|EGG89060.1| hypothetical protein HMPREF0987_02339 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 361

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 167/359 (46%), Gaps = 32/359 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  FRNY  L + FD    IF GDN  GKTNILEA+      +  R     D+ +
Sbjct: 3   IKSLKLKNFRNYDFLSIEFDHATNIFYGDNAQGKTNILEAVYLTGTTKSHRGTKDRDLIQ 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  S   T    +G+E   D+ +K       S + + IN + IR   EL   + + + 
Sbjct: 63  FGNEESHIETVIEKDGIEFQVDMHLK-----KNSPKGIAINKIPIRKASELFGLVHLVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  +D  +   + ++ R++  RNRLL +       C +
Sbjct: 118 SPEDLNIIKNGPAERRRFMDLELSQLDKVYLSDLANYNRIINQRNRLLKD-------CQN 170

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK------ENFPHIKLSLTGFLDG---KF 236
                AEL   +++  +++I    S IME  +K      E    I   LTG  +     +
Sbjct: 171 ----RAELNEMLDLWDMQLI-QYGSRIMERREKFLEEVNEIISGIHYKLTGGRETITISY 225

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVV 295
           +++   +  E+   L   R+ D   + T  GPHR D+   +  K I I   GS G+Q+  
Sbjct: 226 EKNIGQM--EFESVLKKNRERDIRMKSTSAGPHRDDIC--FLTKDIDIRKFGSQGQQRTA 281

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            + + L+   ++       P+LLLD++ + LD++++N L   + DI + I  TG D+ V
Sbjct: 282 ALSLKLSEIEIVRKLIKDTPVLLLDDVLSELDKNRQNYLLDSIHDIQTLITCTGVDEFV 340


>gi|332980608|ref|YP_004462049.1| DNA replication and repair protein RecF [Mahella australiensis 50-1
           BON]
 gi|332698286|gb|AEE95227.1| DNA replication and repair protein RecF [Mahella australiensis 50-1
           BON]
          Length = 363

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 175/375 (46%), Gaps = 25/375 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L ++++RNY ++++ F+    +F GDNG GKTNILEAI   S GR  R +   D+ R
Sbjct: 3   IKELTLTDYRNYNNVKINFNIGINVFWGDNGAGKTNILEAIYLTSAGRSHRTSRDKDMIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+   F    +V   +G  D+++ +     + ++   +N   I  + +L   +      
Sbjct: 63  QGAQDAFINI-KVIRKDGEIDVNMMIPQNGSKRIK---VNGKYINRIAQLMGIVTAVIFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183
           P   ++      ERRRF+D  +  I P +   +  + +++  RN+ L +   G+      
Sbjct: 119 PEDLKLVKEGPEERRRFIDIFISQIKPDYLYNLQKYYKILENRNKTLKDIKYGHASRDLL 178

Query: 184 SSIEAQMAELGVKINIAR---VEMINALSSLIMEYV--QKENFPHIKLSLTGFLDGKFDQ 238
           +    Q+A +G ++   R   V+ I A  S I EY+   KEN   ++   T  L G   Q
Sbjct: 179 AVWNEQLAYIGTELLEQRLYFVDKICAEVSDIHEYITDHKENLK-LRYKSTLSLSGNIKQ 237

Query: 239 SF-CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +F  AL + +   +  G         T IGPHR D+I+   D  +   +GS G+Q+   +
Sbjct: 238 NFISALNQRFDADINMG--------TTTIGPHRDDMIILVNDMDMR-YYGSQGQQRTAAL 288

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + L    +  +  G +P+LLLD++ + LD  ++N L   +     Q  MT   KS +  
Sbjct: 289 SLKLGQLEVTEDLIGESPVLLLDDVMSELDIMRQNMLMSYMKRY--QTMMTCIRKSDYLE 346

Query: 358 LNETAKFMRISNHQA 372
             +   F  + N Q 
Sbjct: 347 QYDKKTFFYVENGQV 361


>gi|323342251|ref|ZP_08082483.1| recombination protein F [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463363|gb|EFY08557.1| recombination protein F [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 361

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 175/366 (47%), Gaps = 14/366 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L + +FRN ++L L F+    +FVGDNG GKTNI+E++ +LS GR FR +S   +
Sbjct: 1   MKVKNLELKQFRNISNLNLSFNKNINVFVGDNGQGKTNIIESLVYLSSGRSFRVSSDEYL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+  F S  A +E      ++ + L +    + + LQ+N   ++ + E      +  
Sbjct: 61  IQYGN-EFLSVIADIEDQNNTQNLKVVLSS----AGKYLQVNQQPLKKMTEFIGRCNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P     +S    +RRR +D  +  +  R+  ++    +L+  RN  L     D  +  
Sbjct: 116 FNPEDINFYSNSPRKRRREIDFELGKMSKRYLNQLSLSNKLLSERNAYLKNKNVDQDYLE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCA 242
            +  ++ +  + I   R + ++AL+ +I  Y     ++  HI L     +  + D     
Sbjct: 176 ILTEKLVDASILIIEMRAKFVHALNPIINHYYHLLSDSKDHIVLHYKAPISLEGD----- 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           LKE+   K+ D  + D   + T  G HR D I    D  + +   S G+++++++   LA
Sbjct: 231 LKEQLLSKMQDSFQRDCDFKVTQNGIHRDDFIFMINDIPV-VNVSSQGQKRMLIIAFKLA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              LI  +    PIL LD++ + LD  +R  +  ++ +   Q+F+T TD     S  + +
Sbjct: 290 IVELIFQSRKTYPILCLDDLFSELDNVRRERVLNVLHE-EMQVFITTTDLDYVKSKRDKS 348

Query: 363 KFMRIS 368
            F  +S
Sbjct: 349 VFKVVS 354


>gi|289449549|ref|YP_003474443.1| putative DNA replication and repair protein RecF [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184096|gb|ADC90521.1| putative DNA replication and repair protein RecF [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 382

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 179/360 (49%), Gaps = 25/360 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  FRNY  L   F  +  +F G NG GKTN+LEAI   + GR  R +  AD+ +
Sbjct: 3   INKLELENFRNYDHLTASFIPEINVFYGFNGQGKTNLLEAIYLCTCGRSHRTSRDADLIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI--NDVV--IRVVDELNKHLRI 122
                +      +   E    +SI  +  +  S R  +I  +D +   R+VD +     +
Sbjct: 63  FEQLHYQVLIEFIPQDEYCETLSIAYKKDNFSSARGKRIIKHDGIELTRIVDLMGIFHAV 122

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            +    +  +  G  + RRRFLD ++  ID  +  ++  F ++++ RN++L +   +S W
Sbjct: 123 IFAPEDLQLLKDGPGI-RRRFLDILISQIDKLYFIKLQQFVKIIQQRNKMLKDKNTNSKW 181

Query: 183 CSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            S ++    Q+AEL   I   R++++N +S +  E+ Q+ +      S +  +D K++ +
Sbjct: 182 QSLMDIWDFQLAELVTYIISKRIQVLNEISDMTKEFYQQIS------SGSEMIDLKYECT 235

Query: 240 FCA----LKEEYAKKLFD----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           F       KE+  + ++D     R+ D     T +GPH  D+     +K   +   S G+
Sbjct: 236 FKTNLKLEKEKVVQNIYDELQKQRQNDLYRGSTSLGPHHDDMQFFLNNKQAKLV-ASQGQ 294

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + +++ + LA    ++  TG  P+LLLD++ + LD+++RNAL   +    +Q+F+T T+
Sbjct: 295 TRSIVLALKLAELECLTEKTGIRPVLLLDDVMSELDQNRRNALIGAMK--SAQVFVTCTE 352


>gi|257866279|ref|ZP_05645932.1| recombination protein F [Enterococcus casseliflavus EC30]
 gi|257873205|ref|ZP_05652858.1| recombination protein F [Enterococcus casseliflavus EC10]
 gi|257800237|gb|EEV29265.1| recombination protein F [Enterococcus casseliflavus EC30]
 gi|257807369|gb|EEV36191.1| recombination protein F [Enterococcus casseliflavus EC10]
          Length = 370

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 171/371 (46%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++S +RNY SL L F+    IF+G+N  GKTNILE+I  L+  +  R +S  ++
Sbjct: 1   MRLNELHLSNYRNYDSLTLTFEKGLVIFLGENAQGKTNILESIYVLAMTKSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +       AR+ G       +I LE    +  R  ++N +  + +      L +  
Sbjct: 61  IRWDTEG-----ARISGSVSRGRSTIPLELFLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  IDP +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQVRRKFLDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLNEKKQTDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQ 238
            +   +  Q+   G KI +AR   +  L+    +  QK  +    +++     + G+   
Sbjct: 176 IYLDVLTEQLVAFGSKIILARQRFVQRLAYWANQLHQKISQGKETLQIDYLSNVPGEAS- 234

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   +++++ K L   +  +   + TL GPHR DL     +K +    GS G+Q+   + 
Sbjct: 235 TLEEIQQQFVKALAQVKDRERFRQVTLAGPHRDDLDFLINEKNVQ-TFGSQGQQRTTALS 293

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA   L+   TG  P+LLLD++ + LD+ ++  L   +         T T + V D +
Sbjct: 294 VKLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGKVQTFLTTTTLEHVKDKM 353

Query: 359 NETAKFMRISN 369
           +  A+   +  
Sbjct: 354 SVEAEIFYVEQ 364


>gi|262281653|ref|ZP_06059422.1| recombination protein F [Streptococcus sp. 2_1_36FAA]
 gi|262262107|gb|EEY80804.1| recombination protein F [Streptococcus sp. 2_1_36FAA]
          Length = 361

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 168/365 (46%), Gaps = 12/365 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRNY    + F +   +F+G N  GKTNILE+I FL+  R  R  S  D   
Sbjct: 3   LKSLTLKHFRNYQDAEINFHSGLNVFLGQNAQGKTNILESIYFLALTRSHRTRSDKDFIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F     +V G+      +I L+       R  +IN +    + +    + +    
Sbjct: 63  -----FQEKDLKVSGILEKKTGTIPLDIELTAKGRITKINHLKQNRLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPLYLADLSNYNHVLKQRNSYLKNSQKIDENFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFDQSFCALK 244
           ++ Q+ E G ++   R++ +  L     E  +  +    K +LT  +L     Q   +++
Sbjct: 178 LDEQLIEYGCRVVKHRLDFLKKLEIFAQE--KHLDISQKKETLTIDYLSSVPLQDIDSIE 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E + + L   RK D   + T +GPHR D  + +    +   +GS G+ + V++ + LA  
Sbjct: 236 ESFRQSLSKNRKRDLFKQNTGVGPHRDD--IAFFINQMDANYGSQGQHRSVVLSLKLAEI 293

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           +LI N T  +PILLLD++ + LD D++  L   ++    Q F+T T      +L +  K 
Sbjct: 294 KLIENITKESPILLLDDVMSELDNDRQLKLLETISQ-EIQTFITTTTLEHLKNLPKDIKI 352

Query: 365 MRISN 369
             ISN
Sbjct: 353 FEISN 357


>gi|108763273|ref|YP_628527.1| DNA replication and repair protein RecF [Myxococcus xanthus DK
           1622]
 gi|122981391|sp|Q1DFP6|RECF_MYXXD RecName: Full=DNA replication and repair protein recF
 gi|108467153|gb|ABF92338.1| DNA replication and repair protein RecF [Myxococcus xanthus DK
           1622]
          Length = 380

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 163/355 (45%), Gaps = 11/355 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++ +FRN   ++L   A  TI VG NG GKTN+LEA+ FL+  +  R    +++
Sbjct: 1   MRLLALHVHDFRNLPQVQLTPSAHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLSEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS       ARV G   L     ++        R   ++      +++    + +  
Sbjct: 61  VRWGSQG-----ARVTGRFLLKGAEREIAVEVGGGTRQAFVDGKKASSLEDYFGGVSVVA 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P    +  G    RR FLDR VF   P   R   ++ R ++ RNRLL EG+  D+ + 
Sbjct: 116 FTPDDLEVVKGGPDSRRGFLDRAVFNRFPAFLRESREYARALKNRNRLLREGHTVDAVYL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSS---LIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            + +  +A+ G +I   R  ++  L+         + +   P +       L+G F  + 
Sbjct: 176 EAYDETLAKAGARIYSRRRALMAELAPRAQATFASIGRTVDPAVYNYRPAHLEGDFAAAD 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                   ++    R    M R  T +GPH  D+ V    ++   A+ S G+Q+ +++G 
Sbjct: 236 ETALAAMLRESLSARLRRDMERGFTSVGPHSDDVSVTLGGRSAR-AYASQGQQRALVLGW 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            +A    +    GF P+LLLD++S+ LD ++   L   +   G+Q+ +T TD S+
Sbjct: 295 KIAEIENLEAAMGFLPLLLLDDVSSELDPERNAYLMGYLAQSGAQVVLTTTDGSL 349


>gi|1107710|emb|CAA61549.1| recF [Lactococcus lactis]
          Length = 357

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 157/330 (47%), Gaps = 19/330 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K + +  FRNY  L+L F     IF+G N  GKTNILEAI FL+  R  R +   ++
Sbjct: 1   MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S+     +V G+   A  +I LE +     R  + N +    + +    L+I  
Sbjct: 61  I-----SWSQQEMKVSGVGEKAHATIPLEVQLSPKGRIAKANHLKENRLADYIGQLKILM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
             P    +  G    RR+F+D  +  I   +    + + R ++ RN  L   +   D ++
Sbjct: 116 FAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDKDKIDKNF 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S ++ Q+AE G KI + R   I+ L   +      E   H K +L       ++Q+   
Sbjct: 176 LSVLDGQLAEHGNKIMLERQNFIDKLE--VHAKKIHEQLTHGKENLKII----YNQN--- 226

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301
           +K +++K+L   +  D    +T +GPHR DL   +    I +A  GS G+Q+ V + I L
Sbjct: 227 VKTDFSKELLSRQDHDIFRHQTSVGPHRDDL--QFFINEINVADFGSQGQQRTVALSIKL 284

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKR 331
           A   LI   TG  PILLLD++ + LD  ++
Sbjct: 285 AEIDLILEETGEYPILLLDDVMSELDNHRQ 314


>gi|51316445|sp|Q899S7|RECF_CLOTE RecName: Full=DNA replication and repair protein recF
          Length = 367

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 178/379 (46%), Gaps = 26/379 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K+L +  FRNY  L +  D    +F+G+N  GKTN+LE+I + S GR  R +   ++ +
Sbjct: 3   VKYLKLINFRNYKELNIELDKNINVFIGNNAQGKTNVLESIYYASIGRSHRTSKDKELIK 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              S S+   +   E ++   +I +  E +     + + +N + I  + EL   L +   
Sbjct: 63  WQESNSYIKIYVAKERLDKTIEIRVLKEGK-----KAINVNSININKLSELFGILNVVIF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWCS 184
            P    I       RR+FLD  +  +  ++   ++ +++++  RN LL +G  +  +   
Sbjct: 118 SPEDLSIVKESPSFRRKFLDIELSKLSKQYYYNLVQYQKVLNERNMLLKKGGDEVPNIIG 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHI-KLSLTGFLDGKF 236
             + Q+A  G  I   R + +  L+ +       I    ++ +F ++  +      DGK 
Sbjct: 178 VYDEQLARFGSNIIREREKYLKKLNDIGKKIHLEITSDKEEISFTYLSSIKNKNMDDGKI 237

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           ++ F        +++   R  D   R T +GPHR D +++  +   T ++GS G+Q+   
Sbjct: 238 EEIFL-------QEIIKNRNSDIEKRYTSVGPHRDDFLIN-INNVNTRSYGSQGQQRTAT 289

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + I  A   +I +  G  P+LLLD++ + LD  ++  +   + DI + I  TG + ++  
Sbjct: 290 LTIKFASLDIIKDEIGEYPVLLLDDVLSELDSSRQKYILSSIRDIQTIITCTGIE-NIKK 348

Query: 357 SLNETAKFMRISNHQALCI 375
            L   AK  ++ N +  CI
Sbjct: 349 YLKNDAKIFKVENGE--CI 365


>gi|18308986|ref|NP_560920.1| recombination protein F [Clostridium perfringens str. 13]
 gi|110801062|ref|YP_694479.1| recombination protein F [Clostridium perfringens ATCC 13124]
 gi|110802319|ref|YP_697355.1| recombination protein F [Clostridium perfringens SM101]
 gi|168207733|ref|ZP_02633738.1| DNA replication and repair protein RecF [Clostridium perfringens E
           str. JGS1987]
 gi|168212007|ref|ZP_02637632.1| DNA replication and repair protein RecF [Clostridium perfringens B
           str. ATCC 3626]
 gi|168215270|ref|ZP_02640895.1| DNA replication and repair protein RecF [Clostridium perfringens
           CPE str. F4969]
 gi|168218303|ref|ZP_02643928.1| DNA replication and repair protein RecF [Clostridium perfringens
           NCTC 8239]
 gi|169343436|ref|ZP_02864436.1| DNA replication and repair protein RecF [Clostridium perfringens C
           str. JGS1495]
 gi|182627052|ref|ZP_02954777.1| DNA replication and repair protein RecF [Clostridium perfringens D
           str. JGS1721]
 gi|20978577|sp|Q8XPF9|RECF_CLOPE RecName: Full=DNA replication and repair protein recF
 gi|122956936|sp|Q0SWY1|RECF_CLOPS RecName: Full=DNA replication and repair protein recF
 gi|123345112|sp|Q0TV61|RECF_CLOP1 RecName: Full=DNA replication and repair protein recF
 gi|18143661|dbj|BAB79710.1| DNA repair and genetic recombination protein [Clostridium
           perfringens str. 13]
 gi|110675709|gb|ABG84696.1| DNA replication and repair protein RecF [Clostridium perfringens
           ATCC 13124]
 gi|110682820|gb|ABG86190.1| DNA replication and repair protein RecF [Clostridium perfringens
           SM101]
 gi|169298388|gb|EDS80477.1| DNA replication and repair protein RecF [Clostridium perfringens C
           str. JGS1495]
 gi|170660924|gb|EDT13607.1| DNA replication and repair protein RecF [Clostridium perfringens E
           str. JGS1987]
 gi|170710063|gb|EDT22245.1| DNA replication and repair protein RecF [Clostridium perfringens B
           str. ATCC 3626]
 gi|170713334|gb|EDT25516.1| DNA replication and repair protein RecF [Clostridium perfringens
           CPE str. F4969]
 gi|177907578|gb|EDT70217.1| DNA replication and repair protein RecF [Clostridium perfringens D
           str. JGS1721]
 gi|182379694|gb|EDT77173.1| DNA replication and repair protein RecF [Clostridium perfringens
           NCTC 8239]
          Length = 361

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 171/374 (45%), Gaps = 21/374 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY +L +       +F+GDN  GKTN++EAI +    +  R     ++  
Sbjct: 3   IKSLQLINYRNYENLSIKLCPNVNVFIGDNAQGKTNVIEAIYYCGFAKSHRTNRDKELIE 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                +F       + ++ + D++I    +D +  + + IN + I  + EL     +   
Sbjct: 63  WNKDRAFIRLDVHKDRLDKIIDVNI---LKDGK--KAISINSIKISKIGELIGTFNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   +I       RRRF+D  +  ++ R+   ++ + +++  RN +L     +      
Sbjct: 118 SPEDLKIVKESPGIRRRFIDMELSQLNKRYYHNLVQYNKVLHERNLVLKNKNINEEMLDI 177

Query: 186 IEAQMAELG---VKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240
            + Q+A+ G   +K  +  +E +N  S  I + +   KE      +S    LD       
Sbjct: 178 YDIQLAQYGENIIKTRLKYIEQLNKYSKEIHKEITSGKEEIEFKYISTVKDLDN------ 231

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +K+   K L   RK D   R T IGPHR D  + Y +      +GS G+Q+  ++ I 
Sbjct: 232 --IKDSMIKLLEQNRKKDIDKRATSIGPHRDDFNI-YLNNIDAKIYGSQGQQRTSVLTIK 288

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            A  ++I   TG  P+LLLD++ + LD +++  +   + +I + I  TG +  +   L+E
Sbjct: 289 FASLKIIKEITGEYPVLLLDDVLSELDFNRKRYVLTSIKNIQTVITCTGIE-DLTSYLDE 347

Query: 361 TAKFMRISNHQALC 374
            +K  R+ N +  C
Sbjct: 348 NSKVFRVINGRIQC 361


>gi|326789143|ref|YP_004306964.1| DNA replication and repair protein RecF [Clostridium lentocellum
           DSM 5427]
 gi|326539907|gb|ADZ81766.1| DNA replication and repair protein RecF [Clostridium lentocellum
           DSM 5427]
          Length = 360

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 175/379 (46%), Gaps = 42/379 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L ++ FRNY  L +  D    IF GDN  GKTNILE+I   +  R  R     ++ R
Sbjct: 3   IKELALTNFRNYEELNISLDKGINIFKGDNAQGKTNILESIYLCATARSHRTHKEKEIIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S     A V+       I   L ++   ++    IN + I  + EL   L I    
Sbjct: 63  WNEESAHVKLA-VQKNYVQDIIDFHLTSKAKSAI----INRMPIGRLGELFGCLNIVMFS 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---DSSWC 183
           P   ++      ERRRF+D  +  ID  +   +  + ++++ RN  L + YF   D+S  
Sbjct: 118 PEDLQLIKNSPKERRRFIDIELCQIDKLYYYSLRQYHKVLKQRNLALKQ-YFSNKDASML 176

Query: 184 SSIEAQMAELGVKINIAR---VEMINALSSLIMEYV--QKENF-----PHIKLSLTGFLD 233
              + Q+ E    +   R   ++ IN ++S I + +   KE       P++++       
Sbjct: 177 DVWDMQLEEYASAVIKKRHEFIQEINEIASKIHDDISGHKEKLQVIYEPNVEV------- 229

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                       ++ KK+   R+ D + + T IGPHR DL     D  +   +GS G+Q+
Sbjct: 230 -----------RDFGKKILKYREKDILYQTTSIGPHRDDLTFLINDMDVK-TYGSQGQQR 277

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            V++ + LA   ++    G  PILLLD++ + LD +++  LF+   +I + I  TG ++S
Sbjct: 278 SVVLSMKLAELNIMKKYIGEEPILLLDDVLSELDHNRQGDLFKYTQNIQTLITCTGIEQS 337

Query: 354 VFDSLNETAKFMRISNHQA 372
           V++    T K  ++ N +A
Sbjct: 338 VWN----TQKIGKLYNVKA 352


>gi|171778593|ref|ZP_02919720.1| hypothetical protein STRINF_00572 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282816|gb|EDT48240.1| hypothetical protein STRINF_00572 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 364

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 163/365 (44%), Gaps = 13/365 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  +RNY +  L F  +  +F+G N  GKTN LEAI FLS  R  R  S  ++  
Sbjct: 3   IQKIALKNYRNYLTNELEFSPRLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRSDKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                      RV G+   +  ++ LE       R  ++N +    + +    + +    
Sbjct: 63  FQEKEL-----RVSGILQRSSGTVPLEINLSSKGRVTKVNHLKQAKLSDYIGVMTVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L T    D  + + 
Sbjct: 118 PEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNTYLKTAEKVDIDFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+A+ G ++   R++ ++ L        Y       H K+    +L     Q    +
Sbjct: 178 LDEQLADFGSRVMEHRLDFVSNLEKAADRYHYAISNGLEHFKIR---YLSSVPFQEKSEI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE + K L   RK D   + T  GPHR DL  ++    +    GS G+ + +++ + +A 
Sbjct: 235 KEYFLKTLEKNRKRDIFKKNTGAGPHRDDL--EFFINDMPANFGSQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI N TG  PILLLD++ + LD  ++  L +++     Q F+T T       L E  K
Sbjct: 293 IELIKNVTGDFPILLLDDVMSELDNYRQTELLKMIIAENVQTFITTTSLEHLSKLPEELK 352

Query: 364 FMRIS 368
              ++
Sbjct: 353 IFTVN 357


>gi|28209864|ref|NP_780808.1| recombination protein F [Clostridium tetani E88]
 gi|28202299|gb|AAO34745.1| recFprotein [Clostridium tetani E88]
          Length = 370

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 178/379 (46%), Gaps = 26/379 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K+L +  FRNY  L +  D    +F+G+N  GKTN+LE+I + S GR  R +   ++ +
Sbjct: 6   VKYLKLINFRNYKELNIELDKNINVFIGNNAQGKTNVLESIYYASIGRSHRTSKDKELIK 65

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              S S+   +   E ++   +I +  E +     + + +N + I  + EL   L +   
Sbjct: 66  WQESNSYIKIYVAKERLDKTIEIRVLKEGK-----KAINVNSININKLSELFGILNVVIF 120

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWCS 184
            P    I       RR+FLD  +  +  ++   ++ +++++  RN LL +G  +  +   
Sbjct: 121 SPEDLSIVKESPSFRRKFLDIELSKLSKQYYYNLVQYQKVLNERNMLLKKGGDEVPNIIG 180

Query: 185 SIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHI-KLSLTGFLDGKF 236
             + Q+A  G  I   R + +  L+ +       I    ++ +F ++  +      DGK 
Sbjct: 181 VYDEQLARFGSNIIREREKYLKKLNDIGKKIHLEITSDKEEISFTYLSSIKNKNMDDGKI 240

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           ++ F        +++   R  D   R T +GPHR D +++  +   T ++GS G+Q+   
Sbjct: 241 EEIFL-------QEIIKNRNSDIEKRYTSVGPHRDDFLIN-INNVNTRSYGSQGQQRTAT 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + I  A   +I +  G  P+LLLD++ + LD  ++  +   + DI + I  TG + ++  
Sbjct: 293 LTIKFASLDIIKDEIGEYPVLLLDDVLSELDSSRQKYILSSIRDIQTIITCTGIE-NIKK 351

Query: 357 SLNETAKFMRISNHQALCI 375
            L   AK  ++ N +  CI
Sbjct: 352 YLKNDAKIFKVENGE--CI 368


>gi|326202775|ref|ZP_08192642.1| LOW QUALITY PROTEIN: DNA replication and repair protein RecF
           [Clostridium papyrosolvens DSM 2782]
 gi|325986852|gb|EGD47681.1| LOW QUALITY PROTEIN: DNA replication and repair protein RecF
           [Clostridium papyrosolvens DSM 2782]
          Length = 372

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 175/364 (48%), Gaps = 25/364 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  +RN+ + RLVF  +  I  GDNG GKTNILEAI   + GR  R A  +++ +
Sbjct: 3   VKSLVLKNYRNHTNTRLVFSDRFNIIYGDNGQGKTNILEAIYLCASGRSHRTAKDSELIK 62

Query: 67  IGSPSFFSTFARVEGMEGL-ADISIK-LETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G  S FS  A V  +  L  DI IK  E + ++    L+IN++ I+ +  L  +L    
Sbjct: 63  FGCDS-FSINANVFNIGSLEKDIEIKYYENQKNK----LKINEIPIKKIGALMGNLYAVL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    I      ERRRF+D  +  I P +   +    ++++ RN LL     +     
Sbjct: 118 FSPEDLFIVKQGPTERRRFVDITLSQIRPSYFYNLQQLTKILKQRNTLLKNINSNPKLMD 177

Query: 185 SIE---AQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLDG 234
           +++    ++AE+   I  AR      LS+L       + E  +K +F + K S     D 
Sbjct: 178 TVDIWNIRLAEVAASIITARRTFSKMLSNLAESQHNFLTEKSEKISFDY-KCSFQITEDD 236

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
             ++    ++  Y K L      D +   T +GPHR D  +    K++ +  GS G+Q+ 
Sbjct: 237 DKNK----IQNLYIKSLEKTLSRDIILGYTTMGPHRDDYDIMVNGKSLKL-FGSQGQQRS 291

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            ++ + +A   LI   T   P+LLLD++ + LD +++  L   + ++  Q F+T T    
Sbjct: 292 AVLSLKIAEIELIKRETEQYPVLLLDDVMSELDNNRQKYLMESIKEV--QTFVTCTSTEH 349

Query: 355 FDSL 358
           F++L
Sbjct: 350 FENL 353


>gi|331270703|ref|YP_004397195.1| DNA replication and repair protein RecF [Clostridium botulinum
           BKT015925]
 gi|329127253|gb|AEB77198.1| DNA replication and repair protein RecF [Clostridium botulinum
           BKT015925]
          Length = 360

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 179/375 (47%), Gaps = 33/375 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  FRNY +L L F+    +FVGDN  GKTNILE+I +   G+  R     ++ +
Sbjct: 3   IKNLQVINFRNYDNLVLEFNKGINVFVGDNAQGKTNILESIYYCGLGKSHRTNKDKELIK 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            GS  ++ S +   E ++   DI I  E +     + +++N + ++ + +L     +   
Sbjct: 63  WGSKDAYVSIYVCKERLDKKIDIKIFKEGK-----KGVKVNSIKLKTISDLIGIFNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   +I     + RR+FLD  +  ++ ++   ++ + +++  RN +L +   D      
Sbjct: 118 SPEDLKIVKESPLYRRKFLDIELSKLNKKYYYSLVRYNKVLNERNTILRKWNSDKGVTEV 177

Query: 186 IEAQMAELGVKINIARVEMINALS-------SLIMEYVQKENFPHIKLSLTGFLD---GK 235
            + Q+++ G  I   R++ I +LS         I  + +K  F +I  S+  F +   G 
Sbjct: 178 YDHQLSKYGSFIIKERLKYIESLSIKGKRIHDEITSHKEKIEFKYI-TSIKNFNNIQSGF 236

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           FD     L +++ K              T  GPHR D I++  +   T   GS G+Q+  
Sbjct: 237 FDILRKNLDKDFEKG------------STSFGPHRDDFIIN-INNTDTRTFGSQGQQRTA 283

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSV 354
           ++ I LA   +I   TG  P+LLLD++ + LD +++  +   +     Q  +TGT   ++
Sbjct: 284 ILTIKLASLEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIKKF--QTIITGTGILNI 341

Query: 355 FDSLNETAKFMRISN 369
            D L++  K  +++N
Sbjct: 342 KDYLDDHVKLFKVTN 356


>gi|118578452|ref|YP_899702.1| recombination protein F [Pelobacter propionicus DSM 2379]
 gi|118501162|gb|ABK97644.1| DNA replication and repair protein RecF [Pelobacter propionicus DSM
           2379]
          Length = 370

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 163/350 (46%), Gaps = 10/350 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I++FRN  S+R        +  G NG GKTN+LEAI  L   R FR A   D 
Sbjct: 1   MRLTRLSIADFRNIGSVRFTPGRCFNLIHGRNGQGKTNLLEAIYLLGSPRSFRNARLPDF 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   +         G+ G   +SI      + + R ++++   I+   +L   + + 
Sbjct: 61  IRHGEQRAHLHGEVESAGIHGRIGLSI------ENAGRRVELDGKGIQRASDLYGRINVV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    +       RRR+LDR ++  D  +      F+R+++ RN+LL     D S  
Sbjct: 115 VFSPDDTAMVRYGPETRRRYLDRTIYMCDIGYLHCWHAFQRILKQRNQLLKNS--DKSGL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            +   Q+AE G +I + R   +  L+ ++  +    +      S+    +G   Q    +
Sbjct: 173 DTWTEQLAETGAEIIVRRRRFVERLNGMLQRHYGNISAGEETASVAYEPEGINSQEQQRV 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +EE  +     ++ D     T  GPHR DL      + +  + GSTG+QK  ++ + +A 
Sbjct: 233 REELLELFQRSQQSDIRQGTTTAGPHRDDLKFRLDGRPLK-SFGSTGQQKSFVLALKMAE 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
              +++  G  P+LLLD++S+ LD+ +   L   + ++  Q+FMT T +S
Sbjct: 292 IDNLTDIFGEPPLLLLDDVSSELDDARSGNLLHFLLNMDIQVFMTTTQRS 341


>gi|157149944|ref|YP_001449331.1| recombination protein F [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189039648|sp|A8AU71|RECF_STRGC RecName: Full=DNA replication and repair protein recF
 gi|157074738|gb|ABV09421.1| DNA replication and repair protein RecF [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 361

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 167/365 (45%), Gaps = 12/365 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRNY    + F +   IF+G N  GKTNILE+I FL+  R  R  S  D   
Sbjct: 3   LKSLTLKHFRNYQDAEINFHSGLNIFLGQNAQGKTNILESIYFLALTRSHRTRSDKDFIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F     +V G+      +I L+       R  +IN +    + +    + +    
Sbjct: 63  -----FQEKDLKVSGILEKKTGTIPLDIELTAKGRITKINHLKQNRLSDYIGAMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPIYLADLSNYNHVLKQRNSYLKNSQNIDENFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFDQSFCALK 244
           ++ Q+ E G ++   R++ +  L     E  +  +    K +LT  +L     Q   +++
Sbjct: 178 LDEQLIEYGCRVVKHRLDFLKKLEIFAQE--KHLDISQKKETLTIDYLSSVPLQDIDSIE 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +   L   RK D   + T +GPHR D  + +    +   +GS G+ + V++ + LA  
Sbjct: 236 ESFRLSLSKNRKRDLFKQNTGVGPHRDD--IAFFINQMDANYGSQGQHRSVVLSLKLAEI 293

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           +LI N T  +PILLLD++ + LD D++  L   ++    Q F+T T      +L +  K 
Sbjct: 294 KLIENITKESPILLLDDVMSELDNDRQLKLLETISQ-EIQTFITTTTLEHLKNLPKDIKI 352

Query: 365 MRISN 369
             ISN
Sbjct: 353 FEISN 357


>gi|229824638|ref|ZP_04450707.1| hypothetical protein GCWU000282_01985 [Catonella morbi ATCC 51271]
 gi|229786009|gb|EEP22123.1| hypothetical protein GCWU000282_01985 [Catonella morbi ATCC 51271]
          Length = 384

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 160/359 (44%), Gaps = 18/359 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +S FRNY  + L      TI  G+N  GKTN+LE+I  LS  +  R    +++
Sbjct: 1   MKLKTLKLSHFRNYQGIELCLGPGLTILTGENAQGKTNLLESIFLLSLAKSHRTNHDSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       AR+E +    +  I L     +  +  Q+N +    +           
Sbjct: 61  IEWDQEQ-----ARIEAVIETKNYEIPLALTLTKKGKVAQVNYLDQSKLSHFVGQFNTVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEG---YFDS 180
             P   ++  G    RRRFLD  +   +P +   ++ ++RL++ RN  L  EG    FD 
Sbjct: 116 FAPEDMQLIKGAPNLRRRFLDIELGQANPIYLNHLLTYQRLLKQRNSYLKQEGRGKKFDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+ + G  +   R+E +  L  +     Q  +    +L L  +++G   Q +
Sbjct: 176 VFFEILTEQLCQEGAHLIQYRMEFLEKLGQIASPIHQNLSNGRDQLRLE-YING--SQVY 232

Query: 241 CALK-EEYAKKLFDGRKMDSMSRR----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
             L  EE  K+L D     +   R    TL GPHR D +    DK      GS G+Q+ +
Sbjct: 233 QPLSLEERIKQLLDQASTYASRERDQGTTLFGPHRDDFMTYVNDKKAQF-FGSQGQQRTI 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           ++ + LA   LI    G  P+LLLD++ + LD+D+++ L   + D    I  T T K +
Sbjct: 292 VLSLKLAEIELIKQARGEYPVLLLDDVLSELDDDRQHILMSYIKDKVQTILTTATIKGL 350


>gi|295108630|emb|CBL22583.1| DNA replication and repair protein RecF [Ruminococcus obeum A2-162]
          Length = 363

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 167/356 (46%), Gaps = 26/356 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY +L+L FD    IF GDN  GKTNILE++      +  R +   ++ R
Sbjct: 3   IKSLELKNYRNYQNLQLDFDKGTNIFYGDNAQGKTNILESVYLCGTTKSHRGSKDKEIIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G      +  R+   +      I +  R +++ + + IN + I+   EL   + + +  
Sbjct: 63  FGEE---ESHIRMMIRKDEFSYKIDMHLRKNKA-KGVAINGLPIKKARELFGIVNLVFFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    I      ERRRF+D  +  +D  +   +  +  ++  RNRLL + Y + S   ++
Sbjct: 119 PEDLNIIKNGPGERRRFMDLELCQLDQIYLTDLAGYNHIVNQRNRLLKDLYMNPSLKETL 178

Query: 187 ---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSF 240
              + QM + G KI   R + +  L+ +I +         I  +LTG    L+  ++ S 
Sbjct: 179 DIWDMQMLQYGTKIINKRKDFVRDLNQVIQD---------IHHNLTGGIEHLEVVYEPST 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298
            A  E++   L   R+ D   + T  GPHR D  L+V+  D      +GS G+Q+   + 
Sbjct: 230 EA--EDFENVLKKNRERDIRMKMTSAGPHRDDLSLVVNGID---IRKYGSQGQQRTAALS 284

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           + L+   L+       PILLLD++ + LD +++  L   + DI + I  TG D  V
Sbjct: 285 LKLSEIYLVKEKIKDTPILLLDDVLSELDSNRQTYLLDCIHDIQTLITCTGLDDFV 340


>gi|313904728|ref|ZP_07838102.1| DNA replication and repair protein RecF [Eubacterium cellulosolvens
           6]
 gi|313470521|gb|EFR65849.1| DNA replication and repair protein RecF [Eubacterium cellulosolvens
           6]
          Length = 362

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 167/358 (46%), Gaps = 26/358 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRNY  + L FD+   +  GDN  GKTN+LEAI  L   +  + +  +++
Sbjct: 1   MHVESLELKNFRNYERIVLDFDSGTNVLYGDNAQGKTNLLEAIHVLGTTKSHKGSHDSEM 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   +      R  G+    D+ +K   +     + + I+ + IR   +L   + I 
Sbjct: 61  IRFGEDEAHMRLIFRKNGIAHKVDMHLKKNGK-----KGVAIDGLPIRKAADLFGMINIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    I      ERRRFLD  +  +D  + + + D+ R++  RN LL +  F+ S  
Sbjct: 116 LFSPEDLNIIKHGPKERRRFLDSELCQLDKIYYQNLADYNRILVQRNALLKDIPFNPSLE 175

Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFD 237
            +++    Q+  LG  I   R      L+ +++          I  +LTG    ++  ++
Sbjct: 176 PTLDVWDMQLIRLGSHIIEQRSRFTRKLNEIVV---------GIHENLTGGREQIEIIYE 226

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVL 296
               A  EE+ +KL  GR  D   + +  GPHR D  V      I I H GS G+Q+   
Sbjct: 227 PDVTA--EEFEEKLTRGRPRDLKLKTSGTGPHRDDFRVQV--NGIDIRHFGSQGQQRSAA 282

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           + + L+   L+    G  P+LLLD++ + LD +++  L + + DI + I  TG D+ +
Sbjct: 283 LSLKLSEIYLVKEMIGDTPVLLLDDVLSELDRNRQKTLLQNMNDIQTLITCTGLDELI 340


>gi|15673957|ref|NP_268132.1| recombination protein F [Lactococcus lactis subsp. lactis Il1403]
 gi|281492578|ref|YP_003354558.1| DNA replication and repair protein RecF [Lactococcus lactis subsp.
           lactis KF147]
 gi|13959468|sp|Q9CE70|RECF_LACLA RecName: Full=DNA replication and repair protein recF
 gi|12725018|gb|AAK06073.1|AE006427_8 RecF protein [Lactococcus lactis subsp. lactis Il1403]
 gi|281376242|gb|ADA65733.1| DNA replication and repair protein RecF [Lactococcus lactis subsp.
           lactis KF147]
          Length = 358

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 157/330 (47%), Gaps = 19/330 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K + +  FRNY  L+L F     IF+G N  GKTNILEAI FL+  R  R +   ++
Sbjct: 1   MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S+     +V G+   A  ++ LE +     R  + N +    + +    L+I  
Sbjct: 61  I-----SWSQQEMKVSGVVEKAHATVPLEVQLSPKGRIAKANHLKENRLADYIGQLKILM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
             P    +  G    RR+F+D  +  I   +    + + R ++ RN  L   +   D ++
Sbjct: 116 FAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDKDKIDKNF 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S ++ Q+AE G KI + R   I+ L   +      E   H K +L       ++Q+   
Sbjct: 176 LSVLDGQLAEHGNKIMLERQNFIDKLE--VHAKKIHEQLTHGKENLKII----YNQN--- 226

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301
           +K +++K+L   +  D    +T +GPHR DL   +    I +A  GS G+Q+ V + I L
Sbjct: 227 VKTDFSKELLSRQDHDIFRHQTSVGPHRDDL--QFFINEINVADFGSQGQQRTVALSIKL 284

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKR 331
           A   LI   TG  PILLLD++ + LD  ++
Sbjct: 285 AEIDLIFEETGEYPILLLDDVMSELDNHRQ 314


>gi|257875896|ref|ZP_05655549.1| recombination protein F [Enterococcus casseliflavus EC20]
 gi|257810062|gb|EEV38882.1| recombination protein F [Enterococcus casseliflavus EC20]
          Length = 370

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 171/371 (46%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++S +RNY SL L F+    IF+G+N  GKTNILE+I  L+  +  R +S  ++
Sbjct: 1   MRLNELHLSNYRNYDSLTLTFEKGLVIFLGENAQGKTNILESIYVLAMTKSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +       AR+ G       +I LE    +  R  ++N +  + +      L +  
Sbjct: 61  IRWDTEG-----ARISGSVSRGRSTIPLELFLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  IDP +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQVRRKFLDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLNEKKQTDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQ 238
            +   +  Q+   G KI +AR   +  L+    +  QK  +    +++     + G+   
Sbjct: 176 IYLDVLTEQLVAFGSKIILARQRFVQRLAYWANQLHQKISQGKETLQIDYLSNVPGEAS- 234

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   +++++ K L   +  +   + TL GPHR DL     +K +    GS G+Q+   + 
Sbjct: 235 TLEEIQQQFVKALALVKDRERFRQVTLAGPHRDDLDFLINEKNVQ-TFGSQGQQRTTALS 293

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA   L+   TG  P+LLLD++ + LD+ ++  L   +         T T + V D +
Sbjct: 294 VKLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGKVQTFLTTTTLEHVKDKM 353

Query: 359 NETAKFMRISN 369
           +  A+   +  
Sbjct: 354 SVEAEIFYVEQ 364


>gi|94995364|ref|YP_603462.1| recombination protein F [Streptococcus pyogenes MGAS10750]
 gi|166221872|sp|Q1J443|RECF_STRPF RecName: Full=DNA replication and repair protein recF
 gi|94548872|gb|ABF38918.1| DNA replication and repair protein recF [Streptococcus pyogenes
           MGAS10750]
          Length = 368

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 168/362 (46%), Gaps = 12/362 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +    
Sbjct: 63  FDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLFELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+   ++ +
Sbjct: 178 LDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TSIYQ 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++  +L    + D   + T +GPHR DL   +    +     S G+ + +++ + +A   
Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T     D L++  + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351

Query: 366 RI 367
           RI
Sbjct: 352 RI 353


>gi|116617178|ref|YP_817549.1| DNA replication and repair protein RecF [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|122272621|sp|Q040E6|RECF_LEUMM RecName: Full=DNA replication and repair protein recF
 gi|116096025|gb|ABJ61176.1| DNA replication and repair protein RecF [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 374

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 164/352 (46%), Gaps = 15/352 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  +RNY+ L L F +   +F+G+N  GKTN+LE+I  L+  R  R +S  D+
Sbjct: 1   MELESLKLDHYRNYSDLTLEFSSGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +    +   RV+       +S+    +  ++    ++N +    +      L +  
Sbjct: 61  VQWQAKE-ATISGRVKRSISETPLSLHFSNKGKKA----RVNHLEQSKLSHYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180
             P    +  G    RRRF+D     ++P +      ++R+++ RN    RL  +   D+
Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYKRILKERNAYLKRLQLKQTTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFD 237
            +   +  Q+ ++G +I IAR E +N L  L  + +  E       +KL     +D   D
Sbjct: 176 VFLDVLSEQLVDVGSQILIARQEFLNKL-ELAAQPIHAEISDQREALKLRYMSSVDFASD 234

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   +K  +A  L   R  + M   T++GPHR +L  D     + I  GS G+Q+   +
Sbjct: 235 ASLEEVKSVFADALSRQRSREIMQGSTMVGPHRDELQFDVNGNNVAI-FGSQGQQRTTAL 293

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
            I LA   L+   TG  P+LLLD++ + LD  ++  L   + D   Q F+T 
Sbjct: 294 AIKLAEIDLMQQETGEYPVLLLDDVLSELDASRQTHLLLAIQD-KVQTFITA 344


>gi|56808225|ref|ZP_00365998.1| COG1195: Recombinational DNA repair ATPase (RecF pathway)
           [Streptococcus pyogenes M49 591]
 gi|209560278|ref|YP_002286750.1| recombination protein F [Streptococcus pyogenes NZ131]
 gi|226737844|sp|B5XJC1|RECF_STRPZ RecName: Full=DNA replication and repair protein recF
 gi|209541479|gb|ACI62055.1| Recombination protein F [Streptococcus pyogenes NZ131]
          Length = 368

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +    
Sbjct: 63  FDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    + +
Sbjct: 178 LDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++  +L    + D   + T +GPHR DL   +    +     S G+ + +++ + +A   
Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T     D L++  + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351

Query: 366 RI 367
           RI
Sbjct: 352 RI 353


>gi|222150257|ref|YP_002559410.1| recombination protein F [Macrococcus caseolyticus JCSC5402]
 gi|254790482|sp|B9E903|RECF_MACCJ RecName: Full=DNA replication and repair protein recF
 gi|222119379|dbj|BAH16714.1| recombination protein F [Macrococcus caseolyticus JCSC5402]
          Length = 369

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 11/350 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L ++ +RNY +  L F  +  IF+G N  GKTN+LEAI  L+  +  R ++  ++
Sbjct: 1   MKLKTLTLTHYRNYETAELNFSDEVNIFIGINAQGKTNLLEAIYCLAMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       F+ +EGM      ++ L     +  +  ++N +  + + E   H+ +  
Sbjct: 61  IGWGHE-----FSHIEGMLSYKHGTMPLSLSISKKGKKAKVNYLEQKRLTEYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    +  G    RRRF+D  +  I   +   + +++RL++ +N LL +       D 
Sbjct: 116 FAPEDLNLVKGSPQIRRRFIDMEIGQISAVYLNDLSNYQRLLKQKNHLLKQMKLSNSNDM 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +    I  Q A+  VK+ + R   I  L +L +           +LSL       ++ + 
Sbjct: 176 TMLEVINEQFAQYAVKLTLRRKMFIEQLETLAIPIHTGITKDKERLSLRYNASLNYELAE 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             + EE  + L      +    ++L GPHR DL     D  +   +GS G+Q+   + I 
Sbjct: 236 QEMFEETIRILNANMGKEIERTQSLYGPHRDDLSFKINDIDVQ-TYGSQGQQRTTALSIK 294

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           LA   LI+   G  PILLLD++ + LD+D++  L   +     Q F+T T
Sbjct: 295 LAEIELINQEIGEYPILLLDDVLSELDDDRQTHLLTTIQH-KVQTFVTTT 343


>gi|42521653|ref|NP_967033.1| DNA repair and genetic recombination protein [Bdellovibrio
           bacteriovorus HD100]
 gi|39574183|emb|CAE77687.1| DNA repair and genetic recombination protein [Bdellovibrio
           bacteriovorus HD100]
          Length = 374

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 189/377 (50%), Gaps = 22/377 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRNY  + L F  +  +F+G+NG GKTN+LEA+  +S G  FR   Y+D + + +
Sbjct: 6   LRLVNFRNYRDVVLSFSPRVNVFLGENGQGKTNLLEAMYMISQGDSFR---YSDNSTLIN 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +  ++ + ++ +    D+  KL+    +S + L +ND  +   D       + +   S+
Sbjct: 63  TN--TSESVIQALITQNDLHYKLKLGLSKSRKVLTLNDKRVNSADIRKIFASVVFSPESL 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFD----SSW 182
             I  G +  RR  +D ++   D ++ + + D+ + ++ RN++L    EG  D     + 
Sbjct: 121 SSIKEG-ADHRRELVDELLVTFDRKNAQLIADYRKALKTRNKILKNFLEGLQDKVVTQNL 179

Query: 183 CSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
             S+  Q   L   +  AR+  ++ LS   +  M+Y+   +   + +S+   +  +   S
Sbjct: 180 LESLNPQFVRLATDLTHARITALHGLSKDFNNAMQYISGNS--SVDISVEYLVSDQNAVS 237

Query: 240 FCALKEEYA--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           F   + E A  K+L +    +  S  +L+GPH+ D++  Y  K       S G+Q+ +++
Sbjct: 238 FTREEVENAITKRLRELHDAELSSGTSLVGPHKHDIVFLYGQKDSRF-FCSQGQQRAIIL 296

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
              +A         G  P+L+LD++ + LD+ KR+AL   + +I +QIF+T TD ++ +S
Sbjct: 297 SFKMAQIVYHRKAHGTYPVLMLDDVLSELDKAKRDALITFLHEINTQIFVTTTDFTLPES 356

Query: 358 LN-ETAKFMRISNHQAL 373
            + +  + +RI + Q L
Sbjct: 357 FSLDQLRVVRIKDGQIL 373


>gi|29840206|ref|NP_829312.1| recombination protein F [Chlamydophila caviae GPIC]
 gi|33301500|sp|Q823G6|RECF_CHLCV RecName: Full=DNA replication and repair protein recF
 gi|29834554|gb|AAP05190.1| recF protein [Chlamydophila caviae GPIC]
          Length = 367

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 167/371 (45%), Gaps = 18/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L +  FRNY    +          G+N  GKTN+LEA+  LS GR FR     + 
Sbjct: 1   MKILSLRLKNFRNYKEAEVSLSPDMNYIFGENAQGKTNLLEALYVLSLGRSFRTTHLTEA 60

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              GS  FF   TF +    +G       L T  D+  + +  +   I+ + +L   + I
Sbjct: 61  IFFGSSHFFLEMTFEK----DGFCHT---LSTYVDKQGKKILCDHSPIKTLSQLIGMVPI 113

Query: 123 SWLVPSMDR-IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
             L  S DR + SG   +RR FL+ ++   DP+++  +  + R +  RN LL      +S
Sbjct: 114 V-LFSSKDRSLISGAPADRRLFLNLLLSQCDPQYKHTLSYYHRALLQRNTLLKTK--QTS 170

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
             S  + Q+A LG  + ++R      L+ L+ E         +++     L  + + S  
Sbjct: 171 TLSVWDEQLATLGAYLTVSRYFCCEQLNQLVQELWSNSLSEQLRIKFKSSLIKQGNLSQE 230

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF- 300
           A+ EE  K+L      D     T +GPHR D  +   D  +++A  S+  QK  L+ I  
Sbjct: 231 AIIEELRKQLTTALHRDLELGTTSVGPHREDFTLMIND--LSVAQFSSEGQKHSLLAILR 288

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA    I N     P+  +D+I A LD  + + L  +   +G Q  MT T+     SL+E
Sbjct: 289 LAECLYIKNIYNACPLFCMDDIHAGLDNHRISQLLDLAPTLG-QTLMTSTNIP-HQSLSE 346

Query: 361 TAKFMRISNHQ 371
           T+K   ++  Q
Sbjct: 347 TSKIFSVNQAQ 357


>gi|304315541|ref|YP_003850686.1| DNA replication and repair protein RecF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777043|gb|ADL67602.1| DNA replication and repair protein RecF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 362

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 168/350 (48%), Gaps = 13/350 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  F+N    ++ F A   +  G N  GK+N+LE I  LS G+ FR +   D+  
Sbjct: 3   LKELTIDNFKNLRQQKVTFSAGTNVIYGTNAQGKSNLLECIRILSIGKSFRNSKNKDMV- 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDD-RSVRCLQINDVVIRVVDELNKHLRISWL 125
               +F S +  ++G+  + +  I +ET       R  ++N+  I+ + EL   +  +  
Sbjct: 62  ----NFNSDYYYIKGIFDIDNEEITVETGYKLNQNRFFKVNNNKIKSISELIGVILTTIF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS---W 182
            P    I  G    RRR++D  +  I   +   +I + +++  RN++L    F S     
Sbjct: 118 SPDDLNIVKGSPFIRRRYMDASISMIKRNYLYDIIQYNKVLANRNKVLKNIKFKSENLKL 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              ++ Q++  G KI + R + IN L+ ++ + +   +   +++     +  K D     
Sbjct: 178 LDIMDEQLSIYGSKIMMYRKQYINNLNLIVKKILHDISDEEVEICYWSNVMDKID-DIKY 236

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +KE  + KL   R++D     T  GPHR D+ + Y +   +  + S G+Q+ + + + LA
Sbjct: 237 IKESLSNKLKLNREIDIKYGDTRYGPHRDDIKI-YVNGHDSRIYASQGQQRTIALCLKLA 295

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
              +I +     PILLLD++ + LD ++R  +   VT  G Q F+T T+K
Sbjct: 296 EHEMIKSENHENPILLLDDVMSELDLNRRRYILNKVT--GCQTFITHTEK 343


>gi|323128305|gb|ADX25602.1| recombination protein F [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 368

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +    
Sbjct: 63  FDH-STVSLTGKIQRVSGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    + +
Sbjct: 178 LDEQLASYGTRVMEHRIDFINALEKEANTHHQAISNGLENLSLSYQSSVVFDKR-TNIYQ 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++  +L    + D   + T +GPHR DL   +    +     S G+ + +++ + +A   
Sbjct: 237 QFLHQLKKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T     D L++  + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351

Query: 366 RI 367
           RI
Sbjct: 352 RI 353


>gi|332139413|ref|YP_004425151.1| Recombinational DNA repair ATPase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549435|gb|AEA96153.1| Recombinational DNA repair ATPase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 362

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 168/352 (47%), Gaps = 17/352 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + I++FRN  S+ L      TI  G+NG GK++++EA+ +L  GR FR   ++ V
Sbjct: 1   MKLDRVQITQFRNLTSVSLSPSPALTIIKGENGSGKSSLIEALYYLGFGRSFRTNKHSSV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    S FS FA  +  EG  ++ +  +   + +  C  IN      + +L   + +  
Sbjct: 61  IQNEKDS-FSVFASCKTEEG-DELKLGFQRSRNETFTC-SINGEHSNKLSDLVSLVPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183
             P    +  G   ERRRF D  +F ++ + +     + + ++ RN LL  +    +   
Sbjct: 118 FTPQSTDLIIGSPSERRRFCDWGLFHVEHQFQSLANQYGKFLKHRNALLKQQANLSAPQN 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E+Q +ELG  ++  R E ++ L+ +  +Y Q E  P+  + L+ +   + D     L
Sbjct: 178 QYWESQFSELGESLSATRQEYVDTLTPIFKQYAQ-EFLPNFDVELSYYKGWEKD---VGL 233

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            E   KK    R+ D     T  GPH++D  L V+  +    +   S G+ ++ +  + +
Sbjct: 234 SESLVKK----REYDGKIGHTSSGPHKADLRLKVNGVNAQELL---SRGQLRMAVAALQM 286

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           +  +L ++ T    I LLD++ A LD DKR      +  + +Q+F+T  + S
Sbjct: 287 SQTKLFNSATQRKSIFLLDDVGAELDADKREQFIDGLLKMDTQVFVTAIESS 338


>gi|256389236|ref|YP_003110800.1| DNA replication and repair protein RecF [Catenulispora acidiphila
           DSM 44928]
 gi|256355462|gb|ACU68959.1| DNA replication and repair protein RecF [Catenulispora acidiphila
           DSM 44928]
          Length = 381

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 173/370 (46%), Gaps = 20/370 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++++FR+YASL +      T FVG NG GKTN++EAI +++     R A+   +
Sbjct: 1   MRVTHLSLADFRSYASLDVALGGGVTAFVGPNGQGKTNLVEAIGYIATLDSHRVATDQPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+P      A VE  EG   + +++E     + R  ++N   +    E+   LR   
Sbjct: 61  VRFGAPRAI-VRANVE-REGRTQL-VEIELNPGGANRA-RLNRNPVPRPREVLGVLRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLVARWPRFAGVRADYDRVLKQRNTLLRTAAMARRNKA 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLTGFLDG 234
              + S   + +  +A  G ++  AR+ +I+ALS L+ + YV+       ++     +  
Sbjct: 177 SGPNISTLDAWDHHLALAGAELVAARLALISALSPLVDKCYVEIAEGGQTRIGYRSTISA 236

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC----DKAITIAHGSTG 290
           + D +  AL E++   L + R  +     TL+GPHR +++++      D      + S G
Sbjct: 237 EPDPTAAALTEQFMTALGEARANELDRGITLVGPHRDEMVLELTSSSGDNMPARGYASHG 296

Query: 291 EQKVVLVGIFLAHARLI--SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           E     + + LA   L+    + G  P+L+LD++ A LD  +R  L   V+     +   
Sbjct: 297 ESWSYALALRLAAYDLLRSDGSDGGEPVLILDDVFAELDAKRRRRLAERVSGADQVLITA 356

Query: 349 GTDKSVFDSL 358
             D  V + L
Sbjct: 357 AVDADVPEQL 366


>gi|21911391|ref|NP_665659.1| recombination protein F [Streptococcus pyogenes MGAS315]
 gi|28896763|ref|NP_803113.1| recombination protein F [Streptococcus pyogenes SSI-1]
 gi|25453245|sp|Q8K5G2|RECF_STRP3 RecName: Full=DNA replication and repair protein recF
 gi|21905607|gb|AAM80462.1| RecF protein [Streptococcus pyogenes MGAS315]
 gi|28812017|dbj|BAC64946.1| RecF protein [Streptococcus pyogenes SSI-1]
          Length = 368

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IKELELKHYRNYDQLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSQRTRADKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +    
Sbjct: 63  FDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    + +
Sbjct: 178 LDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++  +L    + D   + T +GPHR DL   +    +     S G+ + +++ + +A   
Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T     D L++  + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351

Query: 366 RI 367
           RI
Sbjct: 352 RI 353


>gi|19747036|ref|NP_608172.1| recombination protein F [Streptococcus pyogenes MGAS8232]
 gi|94991484|ref|YP_599584.1| recombination protein F [Streptococcus pyogenes MGAS10270]
 gi|306826422|ref|ZP_07459735.1| recombination protein F [Streptococcus pyogenes ATCC 10782]
 gi|25453247|sp|Q8NYZ4|RECF_STRP8 RecName: Full=DNA replication and repair protein recF
 gi|166221871|sp|Q1JEB8|RECF_STRPD RecName: Full=DNA replication and repair protein recF
 gi|19749296|gb|AAL98671.1| recF protein [Streptococcus pyogenes MGAS8232]
 gi|94544992|gb|ABF35040.1| DNA replication and repair protein recF [Streptococcus pyogenes
           MGAS10270]
 gi|304431386|gb|EFM34382.1| recombination protein F [Streptococcus pyogenes ATCC 10782]
          Length = 368

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +    
Sbjct: 63  F-DHSTVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    + +
Sbjct: 178 LDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++  +L    + D   + T +GPHR DL   +    +     S G+ + +++ + +A   
Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T     D L++  + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351

Query: 366 RI 367
           RI
Sbjct: 352 RI 353


>gi|125624996|ref|YP_001033479.1| recombination protein F [Lactococcus lactis subsp. cremoris MG1363]
 gi|166220713|sp|A2RNA8|RECF_LACLM RecName: Full=DNA replication and repair protein recF
 gi|124493804|emb|CAL98796.1| DNA replication and repair protein recF [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071794|gb|ADJ61194.1| recombination protein F [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 359

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 156/333 (46%), Gaps = 25/333 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K + +  FRNY  L+L F     IF+G N  GKTNILEAI FL+  R  R +   ++
Sbjct: 1   MKLKQIELKNFRNYEDLKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R           +V G+   A  ++ LE +     R  + N +    + +    L+I  
Sbjct: 61  IRWSGQEM-----KVSGLVEKAHATVPLEVQLSSKGRIAKANHLKENRLADYIGQLKILM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
             P    +  G    RRRF+D  +  I   +    + + R ++ RN  L   +   D ++
Sbjct: 116 FAPENLELVKGSPATRRRFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDQAKIDKNF 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQS 239
            + ++ Q+AE G KI   R   I  L      + +K     I   LT  L+     ++Q+
Sbjct: 176 LTVLDEQLAEHGNKIMFERKTFIEKLEI----HAKK-----IHEQLTHGLETLKITYNQN 226

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVG 298
              +K +++K+L   +  D    +T +GPHR DL     D  I +A  GS G+Q+ V + 
Sbjct: 227 ---VKTDFSKELLSRQDHDIFRHQTTVGPHRDDLQFFIND--INVADFGSQGQQRTVALS 281

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           I LA   LI   TG  PILLLD++ + LD  ++
Sbjct: 282 IKLAEIDLIFEETGEYPILLLDDVMSELDNHRQ 314


>gi|315221608|ref|ZP_07863528.1| recombination protein F [Streptococcus anginosus F0211]
 gi|315189442|gb|EFU23137.1| recombination protein F [Streptococcus anginosus F0211]
          Length = 365

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 157/355 (44%), Gaps = 30/355 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  FRNY +  + F +   IF+G N  GKTNILEAI FL+  R  R  S  D+  
Sbjct: 3   LKKLQIQHFRNYEATEIDFHSGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIY 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               +      ++ G        I LE       R  ++N +    + +   ++ +    
Sbjct: 63  FSKDTL-----KISGQLVKQTGKISLEIDLTPKGRITKVNHLKQSKLSDYVGNMNVILFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L T    D ++ + 
Sbjct: 118 PEDLQLIKGAPALRRKFIDIELGQIKPIYLSDLSHYHHVLKQRNTYLKTAKTIDETFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK-LSLTGFLDGKFDQSFCA-- 242
           ++ Q+ E G ++   R+E +  L          E+F   K L L+  L+      +C+  
Sbjct: 178 LDDQLVEFGCRVMQHRIEFLKKL----------EHFGQQKHLELSSHLEN-LTIKYCSSV 226

Query: 243 -------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
                  LKE +   L   R  D   + T +GPHR D  + +C   +    GS G+ + V
Sbjct: 227 PLSDSNKLKESFQIALKQSRSRDLFKKNTGVGPHRDD--IAFCINDMNANFGSQGQHRSV 284

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           ++ + LA   L+   T   PILLLD++ + LD  ++  L   ++    Q FMT T
Sbjct: 285 VLSLKLAEIELMETVTKEKPILLLDDVMSELDNSRQLNLLETISQ-NIQTFMTTT 338


>gi|255283817|ref|ZP_05348372.1| RecF protein [Bryantella formatexigens DSM 14469]
 gi|255265700|gb|EET58905.1| RecF protein [Bryantella formatexigens DSM 14469]
          Length = 360

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 163/359 (45%), Gaps = 32/359 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + + +FRNY SL+L FD+   IF GDN  GKTNILEA+      +  R +   +V +
Sbjct: 3   VQSIELEKFRNYKSLKLKFDSGTNIFYGDNAQGKTNILEAVYLCGTTKSHRGSKDREVIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   +  R++       I I +  + ++  + + IN V IR   EL       +  
Sbjct: 63  FQEE---ESHLRMKVERNNVPIEIDMHLKKNKP-KGIAINGVPIRKASELFGIANFVFFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    I       RR F+D  +  +   +   + ++ +++  RNRLL E  F      ++
Sbjct: 119 PEDLNIIKDGPSVRRHFIDMELCQLHKVYLHHLSNYNKVINQRNRLLKESAFRPDILDTL 178

Query: 187 ---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-------F 236
              + QMAE G K+   R   I  L+ +I              S+ G L G+       +
Sbjct: 179 DIWDIQMAEYGKKVIEERRAFIRRLNEIID-------------SIHGRLTGEKEHLRIIY 225

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVV 295
           +++  A  EE+A+ L   R+ D   + ++ GPHR D+   +    + I   GS G+Q+  
Sbjct: 226 EENVTA--EEFAEALRSSREKDLRMKMSMTGPHRDDIC--FQTNGVDIRKFGSQGQQRTA 281

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            + + L+   L+    G  PILLLD++ + LD  ++  L   + DI + I  TG D  V
Sbjct: 282 ALSLKLSEIELVKQEIGDTPILLLDDVLSELDSSRQKYLLDSIHDIQTFITCTGLDDFV 340


>gi|219847382|ref|YP_002461815.1| DNA replication and repair protein RecF [Chloroflexus aggregans DSM
           9485]
 gi|254790467|sp|B8G3J6|RECF_CHLAD RecName: Full=DNA replication and repair protein recF
 gi|219541641|gb|ACL23379.1| DNA replication and repair protein RecF [Chloroflexus aggregans DSM
           9485]
          Length = 392

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 177/390 (45%), Gaps = 29/390 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L + +FRNY    +       +  G N  GKT++LEAI +L+  R  R +S  D+ R
Sbjct: 3   IHHLALRDFRNYRRQDVALSPTTILLYGPNAAGKTSLLEAIFYLATTRSPRLSSDRDLVR 62

Query: 67  ------IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV------VD 114
                  G+P F    A VE   G   + I ++ R D   + L     ++R+        
Sbjct: 63  WDAVGEAGAPPFARIAADVERRIGPVRLEILVQRRLDDGGQPLNGAQKLVRIDKRPARAI 122

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           +L   LR+    P+   +  G   ERRR+LD  +  +DP + R +  +++++  RN LL 
Sbjct: 123 DLIGQLRVVLFTPTDVMLVDGPPAERRRYLDITLSQLDPHYVRTLAYYQKILLQRNSLLR 182

Query: 175 EGYFDSSWCSSIEAQM-------AELGVKINIARVEMINALSSLIMEYVQK----ENFPH 223
                     +++A++       A  G  +   R+  +  LS+L     +K    E+   
Sbjct: 183 AWREQRRLPRNVDAELGYWDQELAAAGGYLLAERLRAVVELSALAGSIYRKISGGEHELQ 242

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAI 282
           I+   +  LD   D    A   E  +  F  ++ D ++R +TL GPHR DL+ +     +
Sbjct: 243 IEYIASCDLDAARDAGSLA---ERLRLAFAAQRTDELARGQTLCGPHRDDLVFNVAGVNL 299

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              +GS G+Q+ + + + +  A L+    G AP+LLLD++ + LD  +R  L  ++    
Sbjct: 300 G-RYGSRGQQRTIALALKIGEAELMQQRGGDAPVLLLDDVLSELDNRRRMHLLDLILRPQ 358

Query: 343 SQIFMTGTDKSVFDS-LNETAKFMRISNHQ 371
            Q  +T T+ S F +     A+  R+ + Q
Sbjct: 359 QQTLLTATNLSDFSADFLAAARRFRVEDGQ 388


>gi|50915219|ref|YP_061191.1| recombination protein F [Streptococcus pyogenes MGAS10394]
 gi|73914003|sp|Q5X9A5|RECF_STRP6 RecName: Full=DNA replication and repair protein recF
 gi|533080|gb|AAA85783.1| RecF protein [Streptococcus pyogenes]
 gi|50904293|gb|AAT88008.1| RecF [Streptococcus pyogenes MGAS10394]
          Length = 368

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +    
Sbjct: 63  F-DHSTVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    + +
Sbjct: 178 LDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++  +L    + D   + T +GPHR DL   +    +     S G+ + +++ + +A   
Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T     D L++  + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351

Query: 366 RI 367
           RI
Sbjct: 352 RI 353


>gi|302669378|ref|YP_003829338.1| DNA replication and repair protein RecF [Butyrivibrio
           proteoclasticus B316]
 gi|302393851|gb|ADL32756.1| DNA replication and repair protein RecF [Butyrivibrio
           proteoclasticus B316]
          Length = 372

 Score =  116 bits (291), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 173/365 (47%), Gaps = 33/365 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +++FRNY ++++ F +   I  GDN  GKTNILEAI   +  +  + +   ++ R
Sbjct: 3   IKSLELADFRNYENVKIDFSSGTNILYGDNAQGKTNILEAIFVSATTKSHKGSKDKEIIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +   T    +  E   D+ ++         + + I+   I+   +L   L + + 
Sbjct: 63  FGKDEAHIRTILEKDNAEYRVDMHLR-----SSKTKGIAIDGQKIKRASDLIGMLNVVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---FDSSW 182
            P    I      ERRRF+D  +  +D  +   +  + +L+  RN++L + Y    +S  
Sbjct: 118 SPEDLSIIKNGPSERRRFMDMELCQLDQIYLNSLSKYNKLVVERNKVLKDLYEHPENSVL 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQS 239
               + Q+ E G  I   R + I  L+ +I    +K         LTG   FL   ++ +
Sbjct: 178 LDVQDKQLCEYGSVIIKTREKFIRDLNEIIRPIHEK---------LTGNKEFLSVYYEPN 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDY----CD---KAITI-AHGST 289
             A  +E+ KKL   R+ D+ +++T +GPH+ D   +V      CD   + I I  +GS 
Sbjct: 229 VSA--DEFEKKLRAARQKDTYAKQTTVGPHKDDFSFVVQKKKADCDEYGEGIDIRKYGSQ 286

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q+   + + L+   ++       P+LLLD++ + LD +++N L   + DI + +  TG
Sbjct: 287 GQQRTASLSLKLSEIEIVKRAKKENPVLLLDDVLSELDSNRQNYLLNTIGDIQTIVTCTG 346

Query: 350 TDKSV 354
            D+ V
Sbjct: 347 LDEFV 351


>gi|322392439|ref|ZP_08065899.1| recombination protein F [Streptococcus peroris ATCC 700780]
 gi|321144431|gb|EFX39832.1| recombination protein F [Streptococcus peroris ATCC 700780]
          Length = 363

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 170/377 (45%), Gaps = 32/377 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+I +FRNY    + F+ +  +FVG N  GKTN+LE+I FL+  R  R  +  ++ +
Sbjct: 3   LKNLSIKQFRNYRDTEIEFNPKLNVFVGRNAQGKTNLLESIYFLALTRSHRTKTDKNLIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F     +V G+      +I LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  -----FEEEKLQVSGILQKKTATIPLEIDLTQKGRITKVNHLKQARLSDYIGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLVKGAPAIRRKFIDMELGQIKPIYLSDLSSYNHILKQRNTYLKSSQNIDDTFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---- 241
           ++ Q+ E G ++ I R + I       ME   K+   H  +S     D   + S C    
Sbjct: 178 LDDQLVEYGCRVMIHRADFIQK-----MELFGKKK--HFDIS-----DQLEELSICYQPS 225

Query: 242 -------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                   L + +   L   R  D   + T +GPHR D+I  +    I  + GS G+ + 
Sbjct: 226 VNFIDKEHLADSFHTALQKSRSRDLFKKNTGVGPHRDDMI--FLINGIDASFGSQGQHRS 283

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           +++ I LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T    
Sbjct: 284 LVLSIKLAEIELMESITKESPILLLDDVMSELDNTRQLKLLETISH-NIQTFITTTSLDH 342

Query: 355 FDSLNETAKFMRISNHQ 371
             +L +T     ++N Q
Sbjct: 343 LQNLPDTLSVFTVNNGQ 359


>gi|166157052|emb|CAO79509.1| DNA replication and repair protein RecF [uncultured candidate
           division WWE3 bacterium EJ0ADIGA11YD11]
          Length = 352

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 163/341 (47%), Gaps = 20/341 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L ++  RN+  L L+FD   T+  GDNG GK+ ILEAI  LS G+        D+
Sbjct: 1   MKILNLKLTNLRNHTKLSLIFDNNVTLITGDNGSGKSTILEAIHILSVGKSKISKYDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADIS---IKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            + G   F S  A +E  +   ++    IK E  ++ S++  +IN V  + +        
Sbjct: 61  IQYGK-KFCSINADIETKDDRFNMELQIIKNEDFENASIKKARINKVA-KSIQYFAGIFN 118

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYF 178
                P   ++ +G   ERR+++D  +  +D  ++R + D+ + +R RN+LL    +G+ 
Sbjct: 119 SVLFSPQDIQLITGSPSERRKYVDETLSQVDIEYKRSLNDYLKAVRQRNKLLEKINQGFG 178

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                     QM + G  I   R +M   +  +++E  +  N    KL L      K + 
Sbjct: 179 GQGEIEFYTHQMLKNGEIIQRKREQMFADIKPILLETGKILNDKKTKLELNY---KKNEI 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   L E      F  R++ +M+  +L+GPHR D  + + D  +T   GS GEQ+  ++ 
Sbjct: 236 SIERLNE------FKSREIAAMT--SLLGPHRDDFEIHFNDHNVT-NFGSRGEQRSCVLS 286

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           + +A    I       P+LLLD+I + LD+  + A+F ++ 
Sbjct: 287 LKIAEISFIEKKKNDKPVLLLDDIFSELDKKHQTAVFDVIN 327


>gi|290581413|ref|YP_003485805.1| putative RecF protein [Streptococcus mutans NN2025]
 gi|254998312|dbj|BAH88913.1| putative RecF protein [Streptococcus mutans NN2025]
          Length = 363

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 169/374 (45%), Gaps = 20/374 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ +N+  +RNY ++   F     +FVG N  GKTN LEAI FLS  R  R  S  ++ +
Sbjct: 3   IEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKELIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G          V G+    +  I LE       R  +IN +    + +    + +    
Sbjct: 63  FGQKEL-----NVSGLLNRVNGKIPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +E   D+ +   
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQRNAYLKSEKKVDTDFLFV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFPHIKLSLTGFLDGKFDQSF 240
           ++ Q+ + G K+   R++ I  L+    +Y      Q+E   H+K+S    +  KFD   
Sbjct: 178 LDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQE---HLKISYLSSV--KFDHK- 231

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +++ +   L   R+ D   + T +GPHR DL   +    +    GS G+ + +++ + 
Sbjct: 232 KNIRDNFLNLLQKNRQGDIFKKNTSVGPHRDDLA--FFINQMNANFGSQGQHRSLILSLK 289

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   LI   TG  PILLLD++ + LD  ++  L   + D   Q F+T T       L +
Sbjct: 290 LAEIELIKTVTGDYPILLLDDVMSELDNYRQIKLLEGIKD-NVQTFITTTSLEHLQQLPK 348

Query: 361 TAKFMRISNHQALC 374
             K   I+  + L 
Sbjct: 349 KLKLFTINQGKVLS 362


>gi|169351629|ref|ZP_02868567.1| hypothetical protein CLOSPI_02410 [Clostridium spiroforme DSM 1552]
 gi|169291851|gb|EDS73984.1| hypothetical protein CLOSPI_02410 [Clostridium spiroforme DSM 1552]
          Length = 365

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 171/351 (48%), Gaps = 20/351 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K LN+  FRNY+   + F     I +G+NG GKTN++EAI  LS G+ FR  S+ +   
Sbjct: 3   VKSLNLYNFRNYSHFVIDFSQDINILIGNNGQGKTNLIEAIYLLSVGKSFR--SHVNKQM 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           I    F + FAR++G          LE     + +  +I++  I  + E    L +   +
Sbjct: 61  I---MFDNEFARIKGKVISNSKQRNLEIILGSNFKNAKIDNQDIHKISEFVGLLNVVVFI 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RRRF+D  +  I P +   +  +  L++ RN+ L     +      +
Sbjct: 118 PDDLYLVKGNPSNRRRFIDLEISKISPIYVFNLSKYSNLLKERNKYLKILNKKNSSGDEY 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
              ++ Q+++L V++   R++ I+ L    SLI + + +++   IKL  + FL  K D +
Sbjct: 178 LEVLDEQLSKLQVELIKKRLQFISRLDQKVSLIYQKIAQKDNEAIKLRYSCFL--KDDLN 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           +  +   Y K      + D    ++ IG H+ DL + Y +      + S G+Q+ V++ +
Sbjct: 236 YENILNLYKK----NHRRDIKYMQSHIGIHKDDLKI-YMNDNDACLYASQGQQRTVVLSL 290

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            +A   LI    G  P+LLLD++ + LD+ ++N L  I+     Q F+T T
Sbjct: 291 KIALIELIKEEIGEYPVLLLDDVLSELDKTRKNMLLDILNQ-KIQTFITTT 340


>gi|326407512|gb|ADZ64583.1| DNA replication and repair protein RecF [Lactococcus lactis subsp.
           lactis CV56]
          Length = 358

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 157/330 (47%), Gaps = 19/330 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K + +  FRNY  L+L F     IF+G N  GKTNILEAI FL+  R  R +   ++
Sbjct: 1   MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S+     +V G+   A  ++ LE +     R  + N +    + +    L+I  
Sbjct: 61  I-----SWSQQEMKVSGVVEKAHATVPLEVQLSPKGRIAKANHLKENRLADYIGQLKILM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
             P    +  G    RR+F+D  +  I   +    + + R ++ RN  L   +   D ++
Sbjct: 116 FAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDKDKIDKNF 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S ++ Q+AE G KI + R   I+ L   +      E   H K +L       ++Q+   
Sbjct: 176 LSVLDGQLAEHGNKIMLERQNFIDKLE--VHAKKIHEQLTHGKENLKII----YNQN--- 226

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301
           +K +++K+L   +  D    +T +GPHR DL   +    I +A  GS G+Q+ V + I L
Sbjct: 227 VKTDFSKELLIRQDHDIFRHQTSVGPHRDDL--QFFINEINVADFGSQGQQRTVALSIKL 284

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKR 331
           A   LI   TG  PILLLD++ + LD  ++
Sbjct: 285 AEIDLIFEETGEYPILLLDDVMSELDNHRQ 314


>gi|251783552|ref|YP_002997857.1| recombination protein F [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242392184|dbj|BAH82643.1| recombination protein F [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 368

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IKELELKYYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +    
Sbjct: 63  FDH-STVSLTGKIQRVSGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    + +
Sbjct: 178 LDEQLASYGTRVMEHRIDFINALEKEANTHHQAISNGLENLSLSYQSSVVFDKR-TNIYQ 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++  +L    + D   + T +GPHR DL   +    +     S G+ + +++ + +A   
Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T     D L++  + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351

Query: 366 RI 367
           RI
Sbjct: 352 RI 353


>gi|303240060|ref|ZP_07326581.1| DNA replication and repair protein RecF [Acetivibrio cellulolyticus
           CD2]
 gi|302592329|gb|EFL62056.1| DNA replication and repair protein RecF [Acetivibrio cellulolyticus
           CD2]
          Length = 372

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 172/355 (48%), Gaps = 12/355 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  FRNY    + F   + I  G+N  GKTNI+EAI   + GR  R +   ++  
Sbjct: 3   IDSLQLRNFRNYKENVIDFSKNYNIIYGENAQGKTNIVEAIFLCASGRSHRTSKDIELVN 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           I S S+       +  E   +I I  E R+ + V  ++IN++ ++ +  L  +L      
Sbjct: 63  INSNSYDIKLDATKNQEK-TNIEISYE-REKKKV--IKINEIPLKKMGNLMGNLLAVIFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    + +    +RRRF+D  +  I P +   +  + +++  RN LL E   +     ++
Sbjct: 119 PEDLSVINEGPSQRRRFIDITLSQIKPSYFYDLQLYNKILLQRNSLLKELQNNRGLIDTL 178

Query: 187 ---EAQMAELGVKINIARVEMINAL--SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
              + ++A++G +I  AR E IN L  ++     +  +N  +I+++ +  ++    +   
Sbjct: 179 DIWDEKIADIGSRIIKARHEFINRLNKAAKYNHSILSDNNENIEINYSSSVETDNYEDID 238

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +K          R ++     TL GPHR D  + + +     + GS G+++ V++ I L
Sbjct: 239 KIKANILMDFKRYRYIELKRNTTLKGPHRDDYEI-FINNLDVKSFGSQGQKRTVILSIKL 297

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           +  ++I   TG  P+LLLD++ + LD  +R  LF  +  I  Q F+T T+K +FD
Sbjct: 298 SELQIIKEETGEYPVLLLDDVMSELDYKRREILFDNINHI--QTFITCTEKDIFD 350


>gi|291561641|emb|CBL40440.1| DNA replication and repair protein RecF [butyrate-producing
           bacterium SS3/4]
          Length = 361

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 165/358 (46%), Gaps = 30/358 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +S++RNY+ L + F     +  GDN  GKTNILEA+   S  +  R +   ++ R
Sbjct: 3   IESIELSDYRNYSHLHIDFHKGTNVLYGDNAQGKTNILEAVYVCSTTKSHRGSKDKEIIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  S      R +G+    D+ +K         + + +N V I+   EL   + + + 
Sbjct: 63  FGADESHIKMMVRRDGIPYRIDMHLK-----KNKAKGVAVNGVPIKKASELFGIVNVIFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  ++  +   +  + + +  RN+LL +  +++S   +
Sbjct: 118 SPEDLNIIKNGPAERRRFVDLELCQLNRLYVYNLAQYNKTVIQRNKLLKDIDYNTSLKET 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC- 241
           +     Q+ + G ++ I R E I  L+ LI E         I   L+G   GK   S   
Sbjct: 178 LPMWNEQLLKYGTELIIMRSEFIKELNPLIAE---------IHAGLSG---GKETLSIAY 225

Query: 242 ---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVL 296
                 E + ++L   +  +   R+TL GPHR DL  IV+  D       GS G+Q+   
Sbjct: 226 EPNVSPENFREQLAKNQFQEIRQRQTLTGPHRDDLNFIVNGTD---IRRFGSQGQQRTAA 282

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           + + LA   L+       P+LLLD++ + LD  ++  L   +T I + I  TG D+ V
Sbjct: 283 LSLKLAEIELVKKIVKDYPVLLLDDVLSELDSKRQEHLLSEITHIQTLITCTGLDEFV 340


>gi|158319063|ref|YP_001511570.1| DNA replication and repair protein RecF [Alkaliphilus oremlandii
           OhILAs]
 gi|166918719|sp|A8MEA3|RECF_ALKOO RecName: Full=DNA replication and repair protein recF
 gi|158139262|gb|ABW17574.1| DNA replication and repair protein RecF [Alkaliphilus oremlandii
           OhILAs]
          Length = 365

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 164/346 (47%), Gaps = 9/346 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  +RNY  + L F  +  +F+GDN  GKTN++E+I   S G+ FR     ++  
Sbjct: 3   VEELKLINYRNYEQMNLKFHPRLNVFIGDNAQGKTNLIESIYLCSAGKSFRTNHDQELIN 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           +        +  V+  +  +D+ I++    +R  + L++N + +  + EL  +L +    
Sbjct: 63  MNKK---QAYIHVKVKKVHSDVHIEVRLNSERK-KDLKVNQIPLVKMGELLGNLNVVLFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P   ++      ERRRF+DR +  I  +    +  + ++++ RN+LL             
Sbjct: 119 PEDLKLVKEGPSERRRFMDREISQISTKFYYTLSQYNKILQHRNKLLKYNKGKEIDIEVW 178

Query: 187 EAQMAELGVKINIARVEMINALSSL--IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + Q+A  G  + + R   I  +S L  +M     E+  ++++     +  K +     +K
Sbjct: 179 DEQLAAAGAWLIVYRRNFIKKISILAKLMHRKITESIENLEVIYEPNVKVKENDEVDVIK 238

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  + L +   +D     T  GPHR D+I+      +   +GS G+Q+  ++ + LA  
Sbjct: 239 EKILQNLKENFNVDKQRGLTTCGPHRDDMILKINGLDVK-TYGSQGQQRTAVLSLKLAEL 297

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            L+    G  PILLLD++ + LD  +++ L   +  +  Q F+T T
Sbjct: 298 ELVKGEVGEYPILLLDDVMSELDSKRQHYLIHNLKSV--QTFITTT 341


>gi|24380484|ref|NP_722439.1| recombination protein F [Streptococcus mutans UA159]
 gi|51316462|sp|Q8DRR3|RECF_STRMU RecName: Full=DNA replication and repair protein recF
 gi|24378515|gb|AAN59745.1|AE015036_4 putative RecF protein, ATPase involved in DNA repair [Streptococcus
           mutans UA159]
          Length = 363

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 169/374 (45%), Gaps = 20/374 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ +N+  +RNY ++   F     +FVG N  GKTN LEAI FLS  R  R  S  ++ +
Sbjct: 3   IEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKELIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G          V G+    +  I LE       R  +IN +    + +    + +    
Sbjct: 63  FGQKEL-----NVSGLLNRVNGKIPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +E   D+ +   
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQRNAYLKSEKKVDTDFLFV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFPHIKLSLTGFLDGKFDQSF 240
           ++ Q+ + G K+   R++ I  L+    +Y      Q+E   H+K+S    +  KFD   
Sbjct: 178 LDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQE---HLKISYLSSV--KFDHK- 231

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +++ +   L   R+ D   + T +GPHR DL   +    +  + GS G+ + +++ + 
Sbjct: 232 KNIRDNFLNLLQKNRQGDIFKKNTSVGPHRDDLA--FFINQMNASFGSQGQHRSLILSLK 289

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L    TG  PILLLD++ + LD  ++  L   + D   Q F+T T       L +
Sbjct: 290 LAEIELTKTVTGDYPILLLDDVMSELDNYRQIKLLEGIKD-NVQTFITTTSLEHLQQLPK 348

Query: 361 TAKFMRISNHQALC 374
             K   I+  + L 
Sbjct: 349 KLKLFTINQGKVLS 362


>gi|326802620|ref|YP_004320438.1| DNA replication and repair protein RecF [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650777|gb|AEA00960.1| DNA replication and repair protein RecF [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 372

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 159/350 (45%), Gaps = 13/350 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L + +FRNY  + + FD    +F+GDN  GKTN++EAI  LS  R  R A   +V R
Sbjct: 3   LKSLYLKDFRNYDQVTMDFDPGINVFIGDNAQGKTNLIEAIYMLSLARSHRTAKEREVIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G     + FAR+EG     +  I L     +  +  ++N +    + +      +    
Sbjct: 63  FG-----ADFARIEGRVAKKNGEIPLSLTMTKKGKIAKLNRLQQERLSDYIGAFNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P    +  G    RR F+DR +  ++P +     +++ L++ RN  L +       D  +
Sbjct: 118 PEDLELVKGAPQLRRTFIDRELSQMNPTYLYDSSNYQHLLKQRNTYLKQLQRREAHDKLY 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            + +  Q+ +   ++ + R + I  L +       + +     L+L        D++   
Sbjct: 178 LNVLTEQLVDFASRMMVQRFQFIQKLEAYAKPIHAQLSMDKETLTLAYQASLTVDETSTV 237

Query: 243 --LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             LK E   K    ++ +     T IGP R DL +   DK +   +GS G+Q+  ++ + 
Sbjct: 238 DQLKTELMDKFQSIQEREIEVGSTQIGPQRDDLKLMINDKVVQ-QYGSQGQQRTTVLSLK 296

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           LA    +  T G  PILLLD++ + LD+ ++  L + + +   Q F+T T
Sbjct: 297 LAEIECMHETLGEYPILLLDDVLSELDDQRQTHLLKTI-EKKVQTFLTTT 345


>gi|239624130|ref|ZP_04667161.1| DNA replication and repair protein RecF [Clostridiales bacterium
           1_7_47_FAA]
 gi|239520516|gb|EEQ60382.1| DNA replication and repair protein RecF [Clostridiales bacterium
           1_7_47FAA]
          Length = 361

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 160/354 (45%), Gaps = 22/354 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  +RNY  L + F+    I  GDN  GKTNILEA+      +  + A   D+ R
Sbjct: 3   IESIELKNYRNYQELHMEFNQGTNILYGDNAQGKTNILEAVYVCCTSKSHKSAKDRDIIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                S      R   +    D+ +K         + + IN V IR   EL     + + 
Sbjct: 63  FDQDESHIKLQIRKNNVPYRIDMHLK-----KNKPKGIAINGVPIRKASELFGIANVVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  ++  +   ++ + +++  RN+LL E +F   +  +
Sbjct: 118 SPEDLNIIKNGPSERRRFIDMELCQLNKLYVHSLVQYNKVLLQRNKLLKELFFKPEYEET 177

Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFC 241
           ++    Q+   G ++   R E I+ L+ +I +         I LSL+G  +  +      
Sbjct: 178 LDVWDMQLVNYGKEVIRFRREFIDRLNEIIQD---------IHLSLSGNKEAIRISYEPY 228

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIF 300
            L++++ + L   R  D   + TL GPHR D  + +    I I   GS G+Q+   + + 
Sbjct: 229 TLEDQFEQTLKKNRPQDMKQKTTLSGPHRDD--ISFIVNGIDIRRFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           L+   L+   +   PILLLD++ + LD  ++N L   + DI + I  TG D  V
Sbjct: 287 LSELELVKAVSRDNPILLLDDVLSELDSSRQNHLLSAIQDIQTMITCTGLDDFV 340


>gi|227432903|ref|ZP_03914847.1| recombination protein F [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351336|gb|EEJ41618.1| recombination protein F [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 374

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 164/352 (46%), Gaps = 15/352 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  +RNY+ L L F +   +F+G+N  GKTN+LE+I  L+  R  R +S  D+
Sbjct: 1   MELESLKLDHYRNYSDLTLEFSSGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +    +   RV+       +S+    +  ++    ++N +    +      L +  
Sbjct: 61  VQWQAKE-ATISGRVKRSISETPLSLHFSNKGKKA----RVNHLEQSKLSHYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180
             P    +  G    RRRF+D     ++P +      ++++++ RN    RL  +   D+
Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYKQILKERNAYLKRLQLKQTTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFD 237
            +   +  Q+ ++G +I IAR E +N L  L  + +  E       +KL     +D   D
Sbjct: 176 VFLDVLSEQLVDVGSQILIARQEFLNKL-ELAAQPIHAEISNQREALKLRYMSSVDFASD 234

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   +K  +A  L   R  + M   T++GPHR +L  D     + I  GS G+Q+   +
Sbjct: 235 ASLEEVKSVFADALSRQRSREIMQGSTMVGPHRDELQFDVNGNNVAI-FGSQGQQRTTAL 293

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
            I LA   L+   TG  P+LLLD++ + LD  ++  L   + D   Q F+T 
Sbjct: 294 AIKLAEIDLMQQETGEYPVLLLDDVLSELDASRQTHLLLAIQD-KVQTFITA 344


>gi|148656558|ref|YP_001276763.1| DNA replication and repair protein RecF [Roseiflexus sp. RS-1]
 gi|148568668|gb|ABQ90813.1| DNA replication and repair protein RecF [Roseiflexus sp. RS-1]
          Length = 398

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 179/382 (46%), Gaps = 32/382 (8%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +  L++ +FRNY  L L  +    +  G N  GKT +LEAI FL+  R  R  +
Sbjct: 1   MVAGMHVSHLSLRDFRNYERLDLTLEPGVILLYGPNAAGKTTVLEAIYFLATTRSPRAGA 60

Query: 61  YADVTR------IGSPSFFSTFARVEGMEGLADISIKLETRDDR--------SVRCLQIN 106
             ++ R      IG P F      V   +G   + + ++ R D         +++ ++++
Sbjct: 61  DRELVRFEAQGDIGVPPFARLVCDVVRADGRVRLEVVVQRRSDEESPGSISPTIKTVRVD 120

Query: 107 DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
              +R +D L  +LR+    P+   + +G   ERRR+LD  +  I+ R+ R +  +++++
Sbjct: 121 RKTVRALD-LVGNLRVVLFTPADIALVTGAPAERRRYLDVTLSQIEGRYVRTLAHYQKVV 179

Query: 167 RGRNRLLTEGY-------FDSSWCSSIEAQMAELGVKINIARVEMI---NALSSLIMEYV 216
           + RN LL           +     +  + ++A  G  +   R+  +   NAL+  +   +
Sbjct: 180 QQRNSLLRAWRDGRRPLRYAGDELAFWDRELAMAGAYLLRERLRAVVDLNALAGPLYCRM 239

Query: 217 QKENFPHI---KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
              + P +   + S+ G +D   D     +++ +   L   R  +    +TLIGPHR DL
Sbjct: 240 SGSDTPLVVTYQSSVAG-IDPASDSRM--IEQAFLAHLVHLRDDEIGRGQTLIGPHRDDL 296

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
           ++   +  +  A+GS G+Q+   + + L  A L+   TG  P+LLLD++ + LD ++R  
Sbjct: 297 LITVGNIPMG-AYGSRGQQRSATLALKLGEAELMRARTGDTPVLLLDDVLSELDAERRAY 355

Query: 334 LFRIVTDIGSQIFMTGTDKSVF 355
           +  ++   G Q  +T T    F
Sbjct: 356 VQDVIERPGQQTIVTATGTDDF 377


>gi|15675937|ref|NP_270111.1| recombination protein F [Streptococcus pyogenes M1 GAS]
 gi|71911668|ref|YP_283218.1| recombination protein F [Streptococcus pyogenes MGAS5005]
 gi|81171138|sp|P0C0D1|RECF_STRP1 RecName: Full=DNA replication and repair protein recF
 gi|13623177|gb|AAK34832.1| RecF protein [Streptococcus pyogenes M1 GAS]
 gi|71854450|gb|AAZ52473.1| DNA replication and repair protein [Streptococcus pyogenes
           MGAS5005]
          Length = 368

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +    
Sbjct: 63  FDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    + +
Sbjct: 178 LDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++  +L    + D   + T +GPHR +L   +    +     S G+ + +++ + +A   
Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDELA--FYINGMNANFASQGQHRSLILSLKMAEVS 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T     D L++  + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351

Query: 366 RI 367
           RI
Sbjct: 352 RI 353


>gi|239993752|ref|ZP_04714276.1| Recombinational DNA repair ATPase [Alteromonas macleodii ATCC
           27126]
          Length = 362

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 167/352 (47%), Gaps = 17/352 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + I++FRN  S+ L      TI  G+NG GK++++EA+ +L  GR FR   ++ V
Sbjct: 1   MKLDRVQITQFRNLTSVSLSPSPALTIIKGENGSGKSSLIEALYYLGFGRSFRTNKHSSV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    S FS FA  +  EG  ++ +  +   + +  C  IN      + +L   + +  
Sbjct: 61  IQNEKDS-FSVFASCKTEEG-DELKLGFQRSRNETFTC-SINGEHSNKLSDLVSLVPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183
             P    +  G   ERRRF D  +F ++ + +     + + ++ RN LL  +    +   
Sbjct: 118 FTPQSTDLIIGSPSERRRFCDWGLFHVEHQFQSLANQYGKFLKHRNALLKQQANLSAPQN 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E+Q +ELG  ++  R E ++ L+ +  +Y Q E  P+  + L+ +   + D     L
Sbjct: 178 QYWESQFSELGESLSATRQEYVDTLTPIFKQYAQ-EFLPNFDVELSYYKGWEKD---VGL 233

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            E   KK    R+ D     T  GPH++D  L V+  +    +   S G+ ++ +  + +
Sbjct: 234 SESLVKK----REYDGKIGHTSSGPHKADLRLKVNGVNAQELL---SRGQLRMAVAALQM 286

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           +  +L +  T    I LLD++ A LD DKR      +  + +Q+F+T  + +
Sbjct: 287 SQTKLFNKATQRKSIFLLDDVGAELDADKREQFIDGLLKMDTQVFVTAIEST 338


>gi|228474213|ref|ZP_04058950.1| DNA replication and repair protein RecF [Staphylococcus hominis
           SK119]
 gi|228271908|gb|EEK13245.1| DNA replication and repair protein RecF [Staphylococcus hominis
           SK119]
          Length = 371

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 167/379 (44%), Gaps = 29/379 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY ++ L    +  I +G+N  GKTN+LE+I  L+  +  R A+  ++
Sbjct: 1   MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYVLALAKSHRTANDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F S +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNSEYAKIEGELSYRHGTMPLTMYITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKTDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q A+  + + + R + I  L +L            E +     P IKLS T 
Sbjct: 176 TMLEVLNQQFAQYALNVTLRREQFIEELEALAQPIHAGITNQRETLSLTYLPSIKLSDTS 235

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
               +       L  EY +     R+MD      L GPHR DL  +  D      +GS G
Sbjct: 236 KNKSELLDEVITLLNEYQQ-----REMDRAV--CLYGPHRDDLGFNVNDMDAQ-TYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTI-QYKVQTFVTTT 346

Query: 351 DKSVFD-SLNETAKFMRIS 368
                D  +   AK  RI+
Sbjct: 347 SVDGIDHEIMNNAKLYRIN 365


>gi|139474624|ref|YP_001129340.1| recombination protein F [Streptococcus pyogenes str. Manfredo]
 gi|166221873|sp|A2RH21|RECF_STRPG RecName: Full=DNA replication and repair protein recF
 gi|134272871|emb|CAM31153.1| DNA replication and repair protein RecF [Streptococcus pyogenes
           str. Manfredo]
          Length = 368

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 159/345 (46%), Gaps = 9/345 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +    
Sbjct: 63  F-DHSTVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    + +
Sbjct: 178 LDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++  +L    + D   + T +GPHR DL   +    +     S G+ + +++ + +A   
Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTT 339


>gi|171912992|ref|ZP_02928462.1| recombination protein F [Verrucomicrobium spinosum DSM 4136]
          Length = 356

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 159/346 (45%), Gaps = 24/346 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++++ + +FR +   RL    + T+ VG NG GKT++LEA   L   +  R ++ +D+ R
Sbjct: 3   LEWMQVRDFRCFTEARLALHPETTLLVGKNGQGKTSLLEAACVLMRLQSPRTSTRSDLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDELNKHLRISWL 125
            G+ +  +     EG+ G      KL      + R + +ND V  R  D L +  R+ W+
Sbjct: 63  FGAQTCVT-----EGVVG----GRKLRVAQSPTARRVAVNDSVCPRAGDYLIQSARVVWM 113

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
             S   +  G +  RRR+LD     + P +   +  +ER +R RN LL       SW   
Sbjct: 114 DHSDMNLARGGAEHRRRYLDFAAAQLFPEYLNALKSYERALRSRNFLLKRDAV-ISW-RQ 171

Query: 186 IEAQ---MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           ++A    +AE G  I   R E++  +   + E        H+ LS  G   G        
Sbjct: 172 VDAYGRILAEHGAAIRRCRDELVQRVQEPVTE-------AHLGLS-AGVEPGAVAYVPGY 223

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E+    L + R  ++  R T +G HR DL +    +    A  S G+Q+ + + + LA
Sbjct: 224 PGEDLEAALMEVRDSEARLRTTQVGVHRDDLALTIHGRPAG-AFASEGQQRTLCLALKLA 282

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            AR++    G  P+LL+D+I   LD+ +R AL   +   G +I  T
Sbjct: 283 QARVLEEAQGEPPLLLIDDIFGELDKTRRQALLAYLPAHGQKIITT 328


>gi|94989496|ref|YP_597597.1| recombination protein F [Streptococcus pyogenes MGAS9429]
 gi|166221870|sp|Q1JJC0|RECF_STRPC RecName: Full=DNA replication and repair protein recF
 gi|94543004|gb|ABF33053.1| DNA replication and repair protein [Streptococcus pyogenes
           MGAS9429]
          Length = 368

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +    
Sbjct: 63  FDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    + +
Sbjct: 178 LDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++  +L    + D   + T +GPHR +L   +    +     S G+ + +++ + +A   
Sbjct: 237 QFLYQLEKNHQKDFFRKNTSVGPHRDELA--FYINGMNANFASQGQHRSLILSLKMAEVS 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T     D L++  + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351

Query: 366 RI 367
           RI
Sbjct: 352 RI 353


>gi|160941458|ref|ZP_02088793.1| hypothetical protein CLOBOL_06349 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435604|gb|EDP13371.1| hypothetical protein CLOBOL_06349 [Clostridium bolteae ATCC
           BAA-613]
          Length = 361

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 156/354 (44%), Gaps = 28/354 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  +RNY  L + F+    I  GDN  GKTNILEA+      +  + A   D+ R
Sbjct: 3   IESIELKNYRNYKELHMEFNQGTNILYGDNAQGKTNILEAVYVCCTSKSHKSAKDRDIIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                S      R   +    D+ +K         + + IN V IR   EL     + + 
Sbjct: 63  FNQDESHIKLQIRKNNVPYRIDMHLK-----KNKPKGIAINGVPIRKASELFGIANVVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  ++  +   ++ + +++  RN+LL E +F   +  +
Sbjct: 118 SPEDLNIIKNGPSERRRFIDMELCQLNKLYVHSLVQYNKVLLQRNKLLKELFFRPEYEET 177

Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC- 241
           ++    Q+   G ++   R E I  L+ +I           I LSLTG   G+ D S   
Sbjct: 178 LDVWDMQLVNYGREVIKFRREFIKQLNEIIHA---------IHLSLTG---GREDISISY 225

Query: 242 ---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLV 297
                +++    L   R  D   + TL GPHR D  + +    I I   GS G+Q+   +
Sbjct: 226 EPFTREDQMEDILKKNRAQDMKQKTTLSGPHRDD--ISFIVNGIDIRRFGSQGQQRTAAL 283

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + L+  +L+   +   PILLLD++ + LD  ++N L   +  I + I  TG D
Sbjct: 284 SLKLSELQLVKQLSHDDPILLLDDVLSELDSSRQNHLLSAIKHIQTMITCTGLD 337


>gi|71904550|ref|YP_281353.1| recombination protein F [Streptococcus pyogenes MGAS6180]
 gi|94993383|ref|YP_601482.1| recombination protein F [Streptococcus pyogenes MGAS2096]
 gi|97180999|sp|Q48QL2|RECF_STRPM RecName: Full=DNA replication and repair protein recF
 gi|166221869|sp|Q1J973|RECF_STRPB RecName: Full=DNA replication and repair protein recF
 gi|71803645|gb|AAX72998.1| DNA replication and repair protein recF [Streptococcus pyogenes
           MGAS6180]
 gi|94546891|gb|ABF36938.1| DNA replication and repair protein recF [Streptococcus pyogenes
           MGAS2096]
          Length = 368

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 167/362 (46%), Gaps = 12/362 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +    
Sbjct: 63  F-DHSTVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    + +
Sbjct: 178 LDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKK-TNIYQ 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++  +L    + D   + T +GPHR +L   +    +     S G+ + +++ + +A   
Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDNLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T     D L++  + +
Sbjct: 295 LMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351

Query: 366 RI 367
           RI
Sbjct: 352 RI 353


>gi|167629174|ref|YP_001679673.1| DNA replication and repair protein recf [Heliobacterium
           modesticaldum Ice1]
 gi|226737804|sp|B0TAL0|RECF_HELMI RecName: Full=DNA replication and repair protein recF
 gi|167591914|gb|ABZ83662.1| DNA replication and repair protein recf [Heliobacterium
           modesticaldum Ice1]
          Length = 372

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 170/357 (47%), Gaps = 14/357 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ + ++ FRNY  L++ F     IFVG NG GKTN+LE+I+ LS G   R A  A++
Sbjct: 1   MQIQAIELAHFRNYRGLQVDFMPGVNIFVGANGQGKTNLLESIALLSGGGSHRDARDAEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            +     +   + R++ M G AD   + I+L    +R  +  ++N+  +R + +L++ + 
Sbjct: 61  VQ-----WQEAYYRIKAM-GTADGQPVVIELAFGGERR-KLAKVNNRRLRRIADLSETMN 113

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYF 178
                P    +  G   +RRR+LDR +    P +   +  + R++  RN   R L EG  
Sbjct: 114 TVVFSPEDLSLVKGSPAQRRRYLDRELSQASPAYGDVLSRYARVLTQRNSLLRRLREGSA 173

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
            ++     + Q+A L V+    R++ +  ++    +  +  +    ++ LT         
Sbjct: 174 TAAELELWDDQLAPLAVETLARRLDGLARIAPYARQIYRGLSRDKEQIELTYRSSFPLPD 233

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                 E Y K L + R  +   + TL GPHR DL +    +   I +GS G+Q+ + + 
Sbjct: 234 DRSRWLEAYRKALQERRAEEIARQATLTGPHRDDLQLFLNGRDARI-YGSQGQQRSIALS 292

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           + LA    I       PI+LLD++ + LD D+R  L   +     Q+F+T T    F
Sbjct: 293 LKLAEIAFIHQIKKEYPIVLLDDVMSELDPDRRQQLLSELESKNIQVFITTTHLHAF 349


>gi|167759581|ref|ZP_02431708.1| hypothetical protein CLOSCI_01938 [Clostridium scindens ATCC 35704]
 gi|167662808|gb|EDS06938.1| hypothetical protein CLOSCI_01938 [Clostridium scindens ATCC 35704]
          Length = 363

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 162/365 (44%), Gaps = 38/365 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ L +  FRNY  L+L FD    IF GDN  GKTNILEA+      +  R A   D+
Sbjct: 1   MKIESLKLKNFRNYDLLKLEFDEATNIFYGDNAQGKTNILEAVYLSGTTKSHRGAKDRDL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   + S         G+    D+ +K       S + + IN + IR   EL   + + 
Sbjct: 61  IKFDQNESHIEAIVERNGINYQIDMHLK-----KNSPKGIAINKMPIRKASELFGIVNLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181
           +  P    I      ERRRF+D  +  +D  +   + ++ R++  RN LL +  F     
Sbjct: 116 FFSPEDLNIIKNGPSERRRFVDLELSQLDKVYLNDLSNYNRIVNQRNHLLKDMGFGKQQD 175

Query: 182 -------WCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQ--KENFPHIKLSLT 229
                  W    + Q+ + G +I   R   VE IN + S I   +   KEN   I     
Sbjct: 176 LMDTLDIW----DLQLIQYGTRIIDRRKKIVEEINKIISSIHGKLTGGKENLQVIYEPSN 231

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           G L          L++  A+ L    +M S S    +GPHR D+     D  I   +GS 
Sbjct: 232 GSL---------TLEQALARNLERDLRMKSTS----VGPHRDDICFMAGDLDIR-RYGSQ 277

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q+   + + L+   L+       P+LLLD++ + LD+ ++N L   + DI + I  TG
Sbjct: 278 GQQRTAALSLKLSEIELVKQAIHDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTG 337

Query: 350 TDKSV 354
            D+ V
Sbjct: 338 VDEFV 342


>gi|153815426|ref|ZP_01968094.1| hypothetical protein RUMTOR_01661 [Ruminococcus torques ATCC 27756]
 gi|317500888|ref|ZP_07959100.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089210|ref|ZP_08338112.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847285|gb|EDK24203.1| hypothetical protein RUMTOR_01661 [Ruminococcus torques ATCC 27756]
 gi|316897768|gb|EFV19827.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405762|gb|EGG85291.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 362

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 161/353 (45%), Gaps = 19/353 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L L FD +  I  GDN  GKTNILEA+      +  R     DV +
Sbjct: 3   IKSLKLKNYRNYDLLDLKFDPKTNILYGDNAQGKTNILEALYLSGTTKSHRGTKDRDVIQ 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   S   T      ++   D+ +K       S + + I+ V IR   EL   +   + 
Sbjct: 63  FGYDESHIETIIEKRNIDFQIDMHLK-----KNSPKGIAIDKVPIRRAGELFGIVHFVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I       RRRF+D  +  +D  +   + ++ R++  RN LL + Y   +   +
Sbjct: 118 SPEDLNIIKEGPAGRRRFIDLELSQLDKIYLNNLSNYNRIINQRNSLLKDIYGQRNLIET 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           +   + Q+AE G KI   R + I  ++ +I +   K      +++LT      ++ S   
Sbjct: 178 LDIWDMQLAEYGKKILERRKQFIKQVNDIIADIHYKLTGGKERITLT------YESSLGN 231

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFL 301
           +  E A  L   R+ D   + T +GPHR D+     D  + I   GS G+Q+   + + L
Sbjct: 232 ITFETA--LSKYRERDLRMKSTTVGPHRDDICF-TTDAGLDIRKFGSQGQQRTAALSLKL 288

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           +   L+       PILLLD++ + LD+ ++N L   + +I + I  TG D+ V
Sbjct: 289 SEIELVKEELNDTPILLLDDVLSELDKHRQNYLLDSIDNIQTIITCTGLDEFV 341


>gi|309791752|ref|ZP_07686242.1| DNA replication and repair protein RecF [Oscillochloris trichoides
           DG6]
 gi|308226245|gb|EFO79983.1| DNA replication and repair protein RecF [Oscillochloris trichoides
           DG6]
          Length = 390

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 180/387 (46%), Gaps = 31/387 (8%)

Query: 11  NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR---- 66
           ++ +FRNY  + L      T+F G N  GKT++LEA+ +L+  R  R  S  D+ R    
Sbjct: 5   SLRDFRNYQRIDLQLAPGITLFYGSNASGKTSLLEALFYLATTRSPRSRSDHDLVRWDAQ 64

Query: 67  --IGSPSFFSTFARVEGMEGLADISIKLETRDDR-------SVRCLQINDVVIRVVDELN 117
              G   F    A VE   G   + + ++ R D        + + ++++    R +D L 
Sbjct: 65  GEAGVLPFARVAAEVERRMGRVRLEVLVQRRADEDGQLTNGAQKLVRVDKRPARALD-LV 123

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
             LR+    P    +  G   ERRR++D  +  +DPR+ R +  ++R+++ RN +L    
Sbjct: 124 GQLRVVLFTPVDLALVDGPPAERRRYIDITLSQLDPRYVRTLAQYQRIVQQRNSMLRAWR 183

Query: 178 FDSSWCSSIEAQMAELGVKINIA-------RVEMINALSSLIME-YVQKENFPHIKLSLT 229
                   I+ ++A    +++ A       R+  IN L+ ++   +      PH  LS+T
Sbjct: 184 ERRRPLRGIDDELAYWDQELSQAGGFLLAERLRAINELNQIVGPLFGAISGEPH-PLSIT 242

Query: 230 GFLDGKFDQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA-H 286
                + D +  A  L +  + +L   R+ +    +TLIGPHR D+   +    I +  +
Sbjct: 243 YRASIELDAALTAPDLSQRLSAELRRLRQDEVARGQTLIGPHRDDM--SFSVAGIDLGRY 300

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           GS G+Q+ V + + L  A L+   +G  P+LLLD++ + LD  +R  L   +     Q  
Sbjct: 301 GSRGQQRSVTLALKLGEAELMRQRSGETPVLLLDDMLSELDTQRRTHLIAAIRRPAQQTV 360

Query: 347 MTGTDKSVFDS--LNETAKFMRISNHQ 371
           +T TD   F +  L E ++ MR+   Q
Sbjct: 361 LTATDLGDFGATFLAEISR-MRVEGGQ 386


>gi|322412900|gb|EFY03808.1| recombination protein F [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 368

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 165/362 (45%), Gaps = 12/362 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IKELELKHYRNYDHLLTSFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +    
Sbjct: 63  FDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+A  G ++   R+  IN L      + Q  +     LSL+      FD+    + +
Sbjct: 178 LDEQLASYGTRVMEHRINFINTLEKEANTHHQAISNGLENLSLSYQSSVVFDKK-TNIYQ 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++  +L    + D   + T +GPHR DL   +    +     S G+ + +++ + +A   
Sbjct: 237 QFLHQLEKNHQKDFFRKNTSVGPHRDDLA--FYINGMNANFASQGQHRSLILSLKMAEVS 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T     D L++  + +
Sbjct: 295 LMKVLTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTS---LDHLSQLPEGI 351

Query: 366 RI 367
           RI
Sbjct: 352 RI 353


>gi|89892749|ref|YP_516236.1| DNA replication and repair protein recF [Desulfitobacterium
           hafniense Y51]
 gi|219666074|ref|YP_002456509.1| DNA replication and repair protein RecF [Desulfitobacterium
           hafniense DCB-2]
 gi|122484263|sp|Q252K0|RECF_DESHY RecName: Full=DNA replication and repair protein recF
 gi|254790474|sp|B8FXW8|RECF_DESHD RecName: Full=DNA replication and repair protein recF
 gi|89332197|dbj|BAE81792.1| DNA replication and repair protein recF [Desulfitobacterium
           hafniense Y51]
 gi|219536334|gb|ACL18073.1| DNA replication and repair protein RecF [Desulfitobacterium
           hafniense DCB-2]
          Length = 365

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 169/354 (47%), Gaps = 21/354 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK+L++  FRNY    + F    TI  G+NG GKTNILE I +L  G+ +R     ++
Sbjct: 1   MEIKWLHLKSFRNYQDQEVDFRPGLTILQGENGQGKTNILEGIYYLLTGKSYRVHREQEL 60

Query: 65  TRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R G   F  +  F        +    ++LE+      + ++IN +  R + E    + +
Sbjct: 61  ARWGENEFHLYGDFI-------VQRRKLRLESHYQDKRKIIKINQIPCRKLSEYVGTINV 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-S 181
            +  P    +  G   ERRRFLD  +     +H + +  + ++++ +N LL +G   S S
Sbjct: 114 VFFSPDDLVMVKGGPAERRRFLDLHIAQHHSKHIQLLNAYNKVLQQKNALLKQGQGGSKS 173

Query: 182 WCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--F 236
             + IE    Q+  +G +I   R E    LS    E   + +    +L++     GK   
Sbjct: 174 QIAQIELWNEQILRIGSEIIRNRWEFTGLLSRKGQEIYGQISSGKEELTMDYHALGKNNL 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           +++  A  +  A+K+     ++   +  LIGPHR D++    +++  + +GS G+Q+ ++
Sbjct: 234 EEALAAFPKLLAEKM----SLEMERKMVLIGPHRDDILFKLNERSARL-YGSQGQQRSIV 288

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +   LA   +I    G  P+LLLD++ + LD  +R+ L      +  Q  MT T
Sbjct: 289 LSTKLAELEVIRQEKGDYPLLLLDDVLSELDRFRRDYLLDYTKSL-QQTIMTMT 341


>gi|78185894|ref|YP_373937.1| RecF protein [Chlorobium luteolum DSM 273]
 gi|123730146|sp|Q3B6Y7|RECF_PELLD RecName: Full=DNA replication and repair protein recF
 gi|78165796|gb|ABB22894.1| RecF protein [Chlorobium luteolum DSM 273]
          Length = 369

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 170/363 (46%), Gaps = 25/363 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++K + +  FRN+ SL    +   T+  G NG GKT++LEAI + +  +    A  ++ 
Sbjct: 1   MRLKNIQVENFRNHHSLAFQPEEGITVLYGPNGSGKTSVLEAIHYCALTKSLLGAPESEC 60

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                  F     F    G      +S+K+    DR  + +Q+N   ++   +    +  
Sbjct: 61  LAFSEEYFIISGEFVSTRG----TSLSVKVSYGKDRG-KLVQLNQSEVKPFSQHVGTIPC 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
               PS   I +G   ERRRFLD  +   D R+   ++D+ R+++ RN LL +    SS 
Sbjct: 116 ITFSPSEIAIVNGSPGERRRFLDNALSQSDRRYLDELLDYRRVLQQRNALLLQ--LASSS 173

Query: 183 CSSIE------AQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLD 233
             S E        +A+L   + + R+  +  LS +  E +Q        H+    + F  
Sbjct: 174 GGSREMLDLWTENLADLAAGVTLRRISFLGELS-VYFEPLQTSLAGKGSHLVTYRSSF-- 230

Query: 234 GKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           G  D       L++ Y K+  + ++ + +  +T+ GPHR DL+     + I   +GS G+
Sbjct: 231 GTIDSGLSRDELRDRYIKRFKETQRQELLRTQTMSGPHRDDLLFLSNGREIK-KYGSQGQ 289

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           Q+  L+ + LA  R  S+    +PI L D++ + LD ++ + +F I+ D G Q  +T TD
Sbjct: 290 QRAFLISLKLALFRYFSHRLPESPICLFDDMFSELDAERTSEIFNILEDCG-QTILTTTD 348

Query: 352 KSV 354
            S+
Sbjct: 349 GSL 351


>gi|326692338|ref|ZP_08229343.1| DNA replication and repair protein RecF [Leuconostoc argentinum
           KCTC 3773]
          Length = 375

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 167/354 (47%), Gaps = 19/354 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L ++ +RNYA L L F A   +F+G+N  GKTN+LE+I  L+  R  R +S  D+
Sbjct: 1   MELTSLTLTNYRNYADLTLDFSAGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  + S  +   RV+       +++   T+  ++    ++N +    + +    L +  
Sbjct: 61  IRWQANS-ATISGRVKKNVSETPLALHFSTKGKKA----RVNHLEQSKLSQYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180
             P    +  G    RRRF+D     ++P +      + R+++ RN    RL  +   D 
Sbjct: 116 FAPEDLDLVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKDRNAYLKRLQMKQTTDK 175

Query: 181 SWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            + S + AQ+ ++G ++ +AR   +E +   +  I   +  +    + L+    +  K D
Sbjct: 176 VFLSVLTAQLVDVGAQVFLARRRFLERLQVAAQPIHAEISNQQ-ETLTLAYQTGVAFKRD 234

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVV 295
                +K  +   L      + M   TL+GPHR D+  IV+  D A+    GS G+Q+  
Sbjct: 235 DDLETVKAAFEAALARQEAREIMQGTTLVGPHRDDIKFIVNENDVAV---FGSQGQQRTT 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
            + + LA   L+   TG  P+LLLD++ + LD +++  L   + D   Q F+T 
Sbjct: 292 ALAVKLAEIDLMQEETGEYPVLLLDDVLSELDANRQTHLLLAIQD-KVQTFITA 344


>gi|331083522|ref|ZP_08332634.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404215|gb|EGG83763.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 361

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 162/353 (45%), Gaps = 26/353 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  +RNY SL L FD    IF GDN  GKTNILEA    S  +  R +   ++ +
Sbjct: 3   IESIELKNYRNYNSLALEFDKGTNIFYGDNAQGKTNILEAAYLCSTTKSHRGSKDKEMIK 62

Query: 67  I-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                +    F   +G+    D+ +K         + + I+ + IR   EL   L I + 
Sbjct: 63  FDADEAHIRMFVNKDGISRKIDMHLK-----KSKPKGIAIDGIPIRKASELFGLLNIVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  +D  +   +  +  ++  RN+LL +  F  S   +
Sbjct: 118 SPEDLNIIKNGPGERRRFMDLELCQLDKLYLSNLSSYNHVLNQRNKLLKDIAFQESLKDT 177

Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQS 239
           +E    Q  + G +I   R   I+ ++  IME +          S+TG    ++  ++ S
Sbjct: 178 LEIWDEQFVQYGKEIIETRRRFIDEING-IMEKIHS--------SITGNREKIELVYEPS 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVG 298
                E + ++L   R+ D   ++T +GPHR D  V      I I  +GS G+Q+   + 
Sbjct: 229 VS--DENFYQELSKNREKDCRFKQTSVGPHRDDFSVKV--NGIDIRRYGSQGQQRTAALS 284

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           + L+   ++       P+LLLD++ + LD +++N L   ++ + + I  TG D
Sbjct: 285 LKLSEIYMVKKVIKDMPVLLLDDVLSELDSNRQNYLLNSISHVQTMITCTGLD 337


>gi|253681218|ref|ZP_04862016.1| DNA replication and repair protein RecF [Clostridium botulinum D
           str. 1873]
 gi|253562456|gb|EES91907.1| DNA replication and repair protein RecF [Clostridium botulinum D
           str. 1873]
          Length = 360

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 176/370 (47%), Gaps = 23/370 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  FRNY +L L F     +F+G+N  GKTNILE+I + S G+  R     ++ +
Sbjct: 3   IKNLQLVNFRNYENLVLEFSEGINVFIGNNAQGKTNILESIYYCSIGKSHRTNKDKELIK 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            GS  ++ S +     ++   DI +  E +     + +++N + ++ + +L     +   
Sbjct: 63  WGSKNAYVSIYVCKNRLDKKIDIKVFKEGK-----KGIKVNSIKLKTISDLIGTFNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   +I     + RR+FLD  +  ++ ++   ++ + +++  RN +L     +      
Sbjct: 118 SPEDLKIVKESPLYRRKFLDIELSKLNKKYYYSLVRYNKVLNERNAILRRWNSNKDVTEV 177

Query: 186 IEAQMAELGVKINIARVEMINALS---SLIMEYV--QKENFPHIKLSLTGFLDGKFDQSF 240
            + Q+++ G  I   R++ I +LS     I + +  QKEN     ++          ++F
Sbjct: 178 YDQQLSKYGSFIIKERLKYIESLSIKGKRIHDEITSQKENIEFKYITCI--------KNF 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             ++ E+ + L    + D     T  GPHR D I++  +   T   GS G+Q+  ++ I 
Sbjct: 230 NNIESEFFEILRKNLEKDFEKGSTSFGPHRDDFIIN-INNTDTRTFGSQGQQRTAILTIK 288

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359
           LA   +I   TG  P+LLLD++ + LD +++  +   +     Q  +TGT   ++ D L+
Sbjct: 289 LASLEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIKKF--QTIITGTGILNIKDYLD 346

Query: 360 ETAKFMRISN 369
              K   ++N
Sbjct: 347 NHVKLFEVTN 356


>gi|15612567|ref|NP_240870.1| recombination protein F [Bacillus halodurans C-125]
 gi|13959499|sp|Q9RC99|RECF_BACHD RecName: Full=DNA replication and repair protein recF
 gi|5672650|dbj|BAA82688.1| 63%-identity [Bacillus halodurans]
 gi|10172616|dbj|BAB03723.1| DNA repair and genetic recombination [Bacillus halodurans C-125]
          Length = 371

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 167/352 (47%), Gaps = 12/352 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L + +FRNY  L + F+    + +G+N  GKTN++EAI FL+  +  R A   ++
Sbjct: 1   MHIERLTLKQFRNYDELDVSFEPNVNVIIGENAQGKTNVIEAIYFLALAKSHRTARDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +P     FAR+EG     +  + L        + +++N +  R + +    + +  
Sbjct: 61  IQWEAP-----FARIEGAFQKQNGPLSLHVVLSGKGKKVKVNGLEQRRLSDYIGAVNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RRRFLD  +  + P +  ++  +++++  RN LL + +  ++   
Sbjct: 116 FGPEDLNLVKGSPQIRRRFLDMELGQMSPVYLHQLAMYQKILLQRNHLLKQLFGKANSDP 175

Query: 185 SIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--S 239
            ++    Q+ E+ V++   R E I  L     E  Q  +    KL +T        +  +
Sbjct: 176 MLDVLTDQLIEVAVEVTKKRFEFIQLLQRWAEEIHQAISRGKEKLVITYEPSVHVSEQLN 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L+E + +     ++ +     TL GPHR DL+    DK +   +GS G+Q+   + +
Sbjct: 236 LSKLREGFYQAYEQKKERERQRGTTLFGPHRDDLVFFVNDKDVQ-TYGSQGQQRTTALSL 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            LA   L+  T G  PILLLD++ + LD+ +++ L   +     Q F+T T+
Sbjct: 295 KLAEIELMKETVGDYPILLLDDVLSELDDYRQSHLLHAIQH-RVQTFVTTTN 345


>gi|319940193|ref|ZP_08014546.1| DNA replication and repair protein recF [Streptococcus anginosus
           1_2_62CV]
 gi|319810664|gb|EFW06994.1| DNA replication and repair protein recF [Streptococcus anginosus
           1_2_62CV]
          Length = 365

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 161/372 (43%), Gaps = 30/372 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  FRNY +  + F +   IF+G N  GKTNILEAI FL+  R  R  S  D+  
Sbjct: 3   LKNLQIQHFRNYEATEIDFHSGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIY 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               +      ++ G       +I LE       R  ++N +    + +   ++ +    
Sbjct: 63  FSKDTL-----KISGQLVKQTGNISLEIDLTPKGRITKVNHLKQSKLSDYVGNMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L T    D ++ + 
Sbjct: 118 PEDLQLIKGAPALRRKFIDIELGQIKPIYLSDLSHYHHVLKQRNTYLKTAKTMDETFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK-LSLTGFLDGKFDQSFCA-- 242
           ++ Q+ E G ++   R+E +  L          E+F   K L L+  L+      +C+  
Sbjct: 178 LDDQLVEFGCRVMQHRIEFLKKL----------EHFGQQKHLELSSHLEN-LTIKYCSSV 226

Query: 243 -------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
                  LKE +   L   R  D   + T +GPHR D+     D  +    GS G+ + V
Sbjct: 227 PLSDSNKLKESFQIALKQSRSRDLFKKNTGVGPHRDDIAFYIND--MNANFGSQGQHRSV 284

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           ++ + LA   L+   T   PILLLD++ + LD  ++  L   ++    Q FMT T     
Sbjct: 285 VLSLKLAEIELMETVTKEKPILLLDDVMSELDNSRQLNLLETISQ-NIQTFMTTTTLEHL 343

Query: 356 DSLNETAKFMRI 367
            S+    K   I
Sbjct: 344 QSMPSNIKIFSI 355


>gi|229829521|ref|ZP_04455590.1| hypothetical protein GCWU000342_01613 [Shuttleworthia satelles DSM
           14600]
 gi|229791952|gb|EEP28066.1| hypothetical protein GCWU000342_01613 [Shuttleworthia satelles DSM
           14600]
          Length = 365

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 165/376 (43%), Gaps = 31/376 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +S +RNY SL + FD    I  GDN  GKTNILE+I      R  R A   ++ R
Sbjct: 3   IQSIELSNYRNYRSLEMEFDRGTNILFGDNAQGKTNILESIYLSGTSRSHRTARDRELIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +   T  R   +    DI I+         + + IN V ++   +L   L I + 
Sbjct: 63  FGQEEAHIRTNVRKNDLSYCIDIHIR-----QAKSKGIAINGVPVKKASDLFGLLGIIFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I     +ERR F++  +  ID  +   + ++ + +  RN LL +G  D      
Sbjct: 118 SPEDLNIVKNGPVERRHFINAELSQIDRIYLSDLSNYNKALNQRNSLL-KGILDHPELRE 176

Query: 186 I----EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-----LTGFLDGKF 236
                + Q+   G ++   R E I  L  ++ E        H KLS     L    +   
Sbjct: 177 TLDVWDGQLVSYGKRLIARRREFIADLIPIVREI-------HRKLSGGIEDLLLAYEPNI 229

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           D +F      +  +LF  R  D     T +GPHR DL +      I    GS G+Q+   
Sbjct: 230 DDTF------FEDELFRARDRDMRMGTTTVGPHRDDLKLSIASVDIR-RFGSQGQQRTCA 282

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA  +++    G  PILLLD++ + LD +++N L   + DI + I  TG D+ V +
Sbjct: 283 LSLKLAEIQMMEAKRGEKPILLLDDVLSELDSNRQNYLLESINDIQTIISCTGLDEFVKN 342

Query: 357 SLNETAKFMRISNHQA 372
             +   +   ISN QA
Sbjct: 343 KFS-VHRVYEISNGQA 357


>gi|325265439|ref|ZP_08132162.1| DNA replication and repair protein RecF [Clostridium sp. D5]
 gi|324029297|gb|EGB90589.1| DNA replication and repair protein RecF [Clostridium sp. D5]
          Length = 361

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 161/358 (44%), Gaps = 30/358 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L L FD +  I  GDN  GKTN+LEA+      +  R     D+ +
Sbjct: 3   IKSLKLKNYRNYELLDLTFDPKTNILYGDNAQGKTNVLEALYLSGTTKSHRGTKDRDLIQ 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                +   T     G+E   D+ +K       S + + IN + IR   EL   +   + 
Sbjct: 63  FERDEAHLETIVEKRGIEYQIDMHLK-----KNSPKGIAINKIPIRKASELFGIIHFVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I       RRRF+D  +  +D  +   + ++ R++  RN LL + Y   +   +
Sbjct: 118 SPEDLNIIKDGPSGRRRFIDLELSQLDKVYLSNLSNYNRIINQRNSLLKDIYKQENLRET 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQS 239
           +   + Q+ E G K+  +R   I  ++ +I          +I   LTG  +     ++ S
Sbjct: 178 LDIWDMQLVEYGTKVMESRKRFIEDVNEII---------SNIHYKLTGGKENITLSYECS 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI---AHGSTGEQKVVL 296
              L  E A K    R+ D   + T +GPHR DL    C  A ++     GS G+Q+   
Sbjct: 229 VGNLTLEQALK--KNRERDMRLKSTSVGPHRDDL----CFMAGSLDIRKFGSQGQQRTAA 282

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           + + L+   L+ +     P+LLLD++ + LD+ ++N L   + DI + I  TG D+ V
Sbjct: 283 LSLKLSEIELVRSLIRDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTVITCTGLDEFV 340


>gi|224477953|ref|YP_002635559.1| recombination protein F [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254790488|sp|B9DPX1|RECF_STACT RecName: Full=DNA replication and repair protein recF
 gi|222422560|emb|CAL29374.1| DNA repair and genetic recombination protein [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 370

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 168/381 (44%), Gaps = 34/381 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNALQLENYRNYEEVVLDCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG        + L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNAEYAKIEGELSYRHGKMPLTMFITKKGKKVKVNHLEQHRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQVRRRFIDMELGQISAVYLNDLSQYQRILKQKNNYLKQLQMKQKTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q AE  +KI + RV  IN L +L            E +  E  P +KLS   
Sbjct: 176 TMLEVLNQQFAEYALKITLKRVHFINELETLAKPIHSSITDERETLDLEYRPSLKLS--- 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGS 288
                 +     L EE  K L D  + +      L GPHR DL   V+  D      +GS
Sbjct: 233 -----EETDEAKLYEEVQKLLQDNMEREIERGVALYGPHRDDLGFKVNEMDAQ---TYGS 284

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+Q+   + I LA   LI+   G  PILLLD++ + LD+ ++  L   + D   Q F+T
Sbjct: 285 QGQQRTTALSIKLAEIELINIEVGEYPILLLDDVLSELDDSRQTHLLSTIQD-KVQTFVT 343

Query: 349 GTDKSVFD-SLNETAKFMRIS 368
            T     D  + + AK  RI+
Sbjct: 344 TTSVEGIDHEIMKHAKLYRIN 364


>gi|262277740|ref|ZP_06055533.1| putative DNA replication and repair protein RecF [alpha
           proteobacterium HIMB114]
 gi|262224843|gb|EEY75302.1| putative DNA replication and repair protein RecF [alpha
           proteobacterium HIMB114]
          Length = 363

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 181/367 (49%), Gaps = 20/367 (5%)

Query: 10  LNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           +NI  F+++   +L +  D QH I  GDNGVGKTN++E++SF S  +G R  +   +   
Sbjct: 7   INIKNFKSHKQYNLEISKDYQHIIIYGDNGVGKTNLIESLSFFSNSKGLRGDTLDKLLPE 66

Query: 68  GSPSFFSTF--ARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKHLRI 122
              +   T   A++       + S K+ T+D  +++    L+   + +  + E+   L  
Sbjct: 67  QETNIIDTNIQAKILSNSNQFNFSFKI-TKDQENLKKTFFLEEKKISLPKIKEI---LSF 122

Query: 123 SWLVPSMDRI-FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
            WL P MD+I + G S+ +R F+D+++   +      +  +++ +  R ++L     D  
Sbjct: 123 IWLSPYMDKIMYEGQSI-KRDFIDKLISQNEKNFNLSVSSYKKNIAERLQILKNTK-DEK 180

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           W   IE ++AE   +I + R    N ++ +I + ++  NF  I +     L    ++   
Sbjct: 181 WLDIIEKRLAENIYEIFLMRRNYANKINKIISDKLK--NFREINIKYNNDLFEDLNEKKI 238

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            + E + +KL   R++D +++RT  G ++  +      K       STGEQK  L+ I L
Sbjct: 239 KI-EIFFEKLKSNRELDEITKRTNFGINKDQIFFFDKIKNRNTDACSTGEQKSSLLTIIL 297

Query: 302 AHA-RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           A+  +L      F  ILLLDE ++H+D+     L   +   G+QI+ TGT K++F ++  
Sbjct: 298 ANCWKLKIEKKDF--ILLLDEATSHIDDQNFGRLVTEIEKFGTQIWYTGTSKNLFQAIEN 355

Query: 361 TAKFMRI 367
              F+ +
Sbjct: 356 KGFFIHL 362


>gi|116512900|ref|YP_811807.1| recombination protein F [Lactococcus lactis subsp. cremoris SK11]
 gi|123025165|sp|Q02WH8|RECF_LACLS RecName: Full=DNA replication and repair protein recF
 gi|116108554|gb|ABJ73694.1| DNA replication and repair protein RecF [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 359

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 156/333 (46%), Gaps = 25/333 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K + +  FRNY  L+L F     IF+G N  GKTNILEAI FL+  R  R +   ++
Sbjct: 1   MKLKQIELKNFRNYEDLKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  +     +V G+   A  ++ LE +     R  + N +    + +    L+I  
Sbjct: 61  I-----CWSGQEMKVSGLVEKAHATVPLEVQLSSKGRIAKANHLKENRLADYIGQLKILM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
             P    +  G    RRRF+D  +  I   +    + + R ++ RN  L   +   D ++
Sbjct: 116 FAPENLELVKGSPATRRRFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDQAKIDKNF 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQS 239
            + ++ Q+AE G KI   R   I  L      + +K     I   LT  L+     ++Q+
Sbjct: 176 LTVLDEQLAEHGNKIMFERKTFIEKLEI----HAKK-----IHEQLTHGLETLKITYNQN 226

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVG 298
              +K +++K+L   +  D    +T +GPHR DL   +    I +A  GS G+Q+ V + 
Sbjct: 227 ---VKTDFSKELLSRQDHDIFRHQTTVGPHRDDL--QFFINEINVADFGSQGQQRTVALS 281

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           I LA   LI   TG  PILLLD++ + LD  ++
Sbjct: 282 IKLAEIDLIFEETGEYPILLLDDVMSELDNHRQ 314


>gi|313885421|ref|ZP_07819171.1| DNA replication and repair protein RecF [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619151|gb|EFR30590.1| DNA replication and repair protein RecF [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 327

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 150/335 (44%), Gaps = 16/335 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K +++S +RNY++L+L  +   TI VG+N  GKTN+LEAI  LS  +  R     ++
Sbjct: 1   MKLKSIHLSHYRNYSNLQLELNDGLTILVGNNAQGKTNLLEAIFLLSVTKSHRTNHDQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G       FA VEG     + S  L  +     +  + N +    +      L +  
Sbjct: 61  IQWG-----QDFALVEGQVQTENYSYPLSLQISSKGKQAKFNYIDQAKLSSFIGKLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P   +I  G    RR+F+D  +    P + + ++ + RL++ RNR L +      FD 
Sbjct: 116 FAPEDLQIIKGAPGLRRKFIDTELGQSHPVYLQELLTYHRLLKQRNRYLKDYGRSTKFDD 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--- 237
            +   +  Q  E  VK+   R + +  L+ L  E   +E     K  LT   D       
Sbjct: 176 LYFEVLSQQFIEQAVKVIGYRTKFVQDLARLAQEI--QEELSGQKDQLTISYDASHSRLN 233

Query: 238 -QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
            Q    L + +       ++ +     TL GPHR DL   Y D       GS G+Q+ ++
Sbjct: 234 YQEIDQLAQAFTDLFAANQQREKDQGVTLYGPHRDDLSF-YLDGKPAQFFGSQGQQRTIV 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           + + LA   LI    G  P+LLLD++ + LD  ++
Sbjct: 293 LSLKLAEIELIKELKGHYPVLLLDDVLSELDAHRQ 327


>gi|297200943|ref|ZP_06918340.1| recombination protein F [Streptomyces sviceus ATCC 29083]
 gi|197716886|gb|EDY60920.1| recombination protein F [Streptomyces sviceus ATCC 29083]
          Length = 373

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/358 (28%), Positives = 162/358 (45%), Gaps = 21/358 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EAI +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAIGYLATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    ++ R        +R  D L   +R   
Sbjct: 61  VRMGA---DRAIVRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLSLTGFL 232
              D S     +  +A +G ++   R+++I AL  L     E +     P I L      
Sbjct: 177 RSMDLSTLDVWDQHLARVGAELLAQRLDLIAALQPLTDKAYEQLAPGGGP-IALEYKPSA 235

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
            G+   +  AL E+    L + RK +     TL+GPHR DL +    +     + S GE 
Sbjct: 236 PGEA-HTREALHEQLMAALAEARKQEIERGVTLVGPHRDDLNLK-LGQLPAKGYASHGES 293

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
               + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T  
Sbjct: 294 WSYALALRLASYDLL-RAEGNEPVLILDDVFAELDTRRRERLAELVAP-GEQVLVTAA 349


>gi|254784276|ref|YP_003071704.1| DNA replication and repair protein RecF [Teredinibacter turnerae
           T7901]
 gi|259563674|sp|C5BKM1|RECF_TERTT RecName: Full=DNA replication and repair protein recF
 gi|237686556|gb|ACR13820.1| DNA replication and repair protein RecF [Teredinibacter turnerae
           T7901]
          Length = 378

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 161/346 (46%), Gaps = 18/346 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+ISEFRN  S  L       +  G+NG GKT+ILE+IS L+ GR FR   +  +     
Sbjct: 7   LDISEFRNLRSATLQPGEGINLISGENGSGKTSILESISVLAHGRSFRTHKFRRLINNDE 66

Query: 70  PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            SF + F ++   EG   +I +   +  D  +R   I+        EL + L +  +  +
Sbjct: 67  KSF-TLFGQI--FEGTTRNIGLSRASNGDIQIR---IDSKAAHTATELAECLPLLVMNSA 120

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             ++  G    RR+F D +VF +    +     + R ++ RN LL       S     + 
Sbjct: 121 SFQLLEGSGQVRRKFFDWLVFHVKQEFKHYWKLYARCIKQRNSLLRRDKITRSELLPWDQ 180

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHI---KLSLTGFLDGKFDQSFCALKE 245
           ++ +    I   R E+     +  +  + + +F      +LS T ++ G       +   
Sbjct: 181 ELTKAAQHIESMRSEVFELFQTHFLNEIGQFDFTETLGAELSCT-YVSG------WSKTG 233

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            Y ++L D  + D  +  T IG H+SD+ ++   +   +   S G+QK V+V +FLA A 
Sbjct: 234 NYNEQLEDQFERDVAAGYTHIGSHKSDVKINLA-RVPAVEELSRGQQKSVIVALFLAEAL 292

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           +   TTG  P+ LLD++ A LDE     + + + ++GSQ+F T  D
Sbjct: 293 VFRTTTGRTPVFLLDDLPAELDEKNLRIVGKALKNLGSQVFATAID 338


>gi|323705851|ref|ZP_08117423.1| DNA replication and repair protein RecF [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534847|gb|EGB24626.1| DNA replication and repair protein RecF [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 362

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 163/350 (46%), Gaps = 13/350 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  F+N    +++F A   +  G N  GK+N+LE I  LS G+ FR +   D+  
Sbjct: 3   LKELIVDNFKNLKHQKVIFSAGTNVIYGSNAQGKSNLLECIRLLSIGKSFRNSKNRDMVC 62

Query: 67  IGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                ++      V+G E   +   KL        R  ++N+  I+ + EL   +  +  
Sbjct: 63  FDVDYYYIKGVFDVDGEEVTVETGYKLNQN-----RFFKVNNNKIKNISELIGVILTTIF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---DSSW 182
            P    I  G    RRR++D  +  I   +   +I + +++  RN++L +  F    +  
Sbjct: 118 SPDDLNIVKGSPSLRRRYMDASISMIKRNYLYDIIQYNKVLANRNKVLKDVKFKKESARL 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              ++ Q++  G KI + R + IN L  ++ + VQ  +   + L     +  K D    +
Sbjct: 178 LDIMDEQLSFFGSKIIMYRRQYINNLDLIVKKIVQDISCEKVDLIYWNNVTDKID-DIKS 236

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +K+    KL   R +D     T  GPHR D+ + + +   +    S G+Q+ + + + LA
Sbjct: 237 IKDLLLNKLILNRDVDIKYGDTKYGPHRDDVKI-FINGHDSRIFASQGQQRTIALCLKLA 295

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
              +I +  G  PILLLD++ + LDE++R  +   V   G Q F+T T+K
Sbjct: 296 EYEVIRSENGENPILLLDDVMSELDENRRKYILNKVE--GCQTFITHTEK 343


>gi|94502203|ref|ZP_01308698.1| recombination protein F [Oceanobacter sp. RED65]
 gi|94425664|gb|EAT10677.1| recombination protein F [Oceanobacter sp. RED65]
          Length = 357

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 162/349 (46%), Gaps = 17/349 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +   RN +   +       +  G+NG GKT+ LEAI +L+  + FR     ++
Sbjct: 1   MAIELLMLQGVRNLSPTNVSPSPLVNLIYGENGSGKTSFLEAIYYLAYCKSFRTHKQKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +       + G   L    + +E R+    R +++N V +    EL   L I  
Sbjct: 61  IQHGQNT-------MTGFCQLPHKQLGVE-RNQEGQRRIKLNGVCLNSAAELASVLPIQL 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P+M R+  G    RR ++D  VF ++P+       F+R  + RN LL  G    S   
Sbjct: 113 LDPTMFRLLEGSPQLRREYIDWGVFHVEPQFFGIWKQFKRAHQTRNALLRAGGASESERK 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
              + +++L  +I   R+  +  L  L   Y+ + N   + ++++ +   K DQ +  L 
Sbjct: 173 IWHSSLSDLANQITSMRIAYLERLKPLFDHYMARLN-DGLGVTMSFYQGWKKDQDYYELL 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E          K D  S  T  GP R+DL +   +    +   S G+QK+V+  + LA A
Sbjct: 232 E-------SSWKSDIESGYTKSGPQRADLRIK-AENVPAMDVLSRGQQKMVVCALKLAQA 283

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            L    +G   I L+D+++A LD + R AL R++ ++  Q+F+T  + +
Sbjct: 284 DLYKQVSGSPCIFLVDDLAAELDINHRKALCRLLEELKCQVFVTAVEST 332


>gi|306826174|ref|ZP_07459509.1| recombination protein F [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304431650|gb|EFM34631.1| recombination protein F [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 363

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 167/372 (44%), Gaps = 22/372 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLTIKTFRNYKETKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE       R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLLQKKTGSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +    D ++ S 
Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+ E G ++   R++ I  L     ++ QK+   H+++S        F QS     +
Sbjct: 178 LDDQLVEYGCRVIKHRIKFIKDLE----KFGQKK---HLEISNQSEELSIFYQSSVNFTD 230

Query: 246 E------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           E      +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 231 EEQLTNSFKMALDKSRSRDLFKKNTGVGPHRDD--ITFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISNHQ 371
           E      I N Q
Sbjct: 348 ENLSIFNIQNGQ 359


>gi|291526543|emb|CBK92130.1| recF protein [Eubacterium rectale DSM 17629]
 gi|291529186|emb|CBK94772.1| recF protein [Eubacterium rectale M104/1]
          Length = 362

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 156/352 (44%), Gaps = 18/352 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + +S FRNY  L + FD++  I  GDN  GKTNILEA       +  + +   ++ R
Sbjct: 3   IKSIQLSNFRNYEKLDISFDSETNIIYGDNAQGKTNILEAAYLSGTTKSHKGSKDKEMIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +   T       E   D+ ++         + + IN + I+   EL   L I + 
Sbjct: 63  FGEDEAHIRTIVEKNDKEYRIDMHLR-----KNGAKGVAINKMPIKKASELFGILNIVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  +D  +   +  + + +  RNRLL +  +      +
Sbjct: 118 SPEDLNIIKNGPAERRRFIDLELCQLDKIYLSNLSKYNKTLVQRNRLLKDIAYRPDLIDT 177

Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           ++    Q+ E G  +   R E +N L+ +I +     +    KL L    +   D  F  
Sbjct: 178 LQVWDMQLLEYGRHVIKKRREFVNELNEIIQDIHSNISGGREKLILK--YEPSIDDIF-- 233

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
               +  +L   R  D    +T +GPHR D++    D      +GS G+Q+   + + L+
Sbjct: 234 ----FEDELLKARSRDLKLCQTTVGPHRDDMLFS-VDGVDIRKYGSQGQQRTSALSLKLS 288

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
              L+       P+LLLD++ + LD +++N L   ++D  + I  TG D+ V
Sbjct: 289 EISLVKKNINSTPVLLLDDVLSELDGNRQNYLLNSLSDTQTIITCTGLDEFV 340


>gi|314935204|ref|ZP_07842557.1| DNA replication and repair protein RecF [Staphylococcus hominis
           subsp. hominis C80]
 gi|313656539|gb|EFS20278.1| DNA replication and repair protein RecF [Staphylococcus hominis
           subsp. hominis C80]
          Length = 371

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 167/379 (44%), Gaps = 29/379 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY ++ L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYVLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F S +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNSEYAKIEGELSYRHGTMPLTMYITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKTDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q A+  + + + R + I  L +L            E +     P IKLS T 
Sbjct: 176 TMLEVLNQQFAQYALNVTLRREQFIEELEALAQPIHAGITNQRETLSLTYLPSIKLSDTS 235

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
               +       L  EY +     R+MD      L GPHR DL  +  D      +GS G
Sbjct: 236 KNKSELLDEVITLLNEYQQ-----REMDRAV--CLYGPHRDDLGFNVNDMDAQ-TYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346

Query: 351 DKSVFD-SLNETAKFMRIS 368
                D  +   AK  RI+
Sbjct: 347 SVDGIDHEIMNNAKLYRIN 365


>gi|260584260|ref|ZP_05852007.1| DNA replication and repair protein RecF [Granulicatella elegans
           ATCC 700633]
 gi|260157778|gb|EEW92847.1| DNA replication and repair protein RecF [Granulicatella elegans
           ATCC 700633]
          Length = 369

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 165/350 (47%), Gaps = 19/350 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L ++ FRNY  L L F     IF+G+N  GKTN++E+I  L+  +  R     ++     
Sbjct: 6   LQLNHFRNYEELFLEFGKGVHIFIGENAQGKTNLMESIYTLAMTKSHRTNQDRELIMWNE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +     A ++G       +I LE R     +  ++N +  + +      L +    P  
Sbjct: 66  DT-----ATIKGKVEKKISNIPLEIRFSNKGKIGRVNHLEQKKLSSYLGQLNVILFAPEN 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS----WCSS 185
             +  G    RR+F+D  +  ++P +   +++++RL++ RN  L +     S    +   
Sbjct: 121 LELVKGAPANRRKFMDMELGQMNPIYLHELVEYQRLIKQRNHYLKQLAIKKSSADLYLEV 180

Query: 186 IEAQMAELGVKINIARVEMINALSSL---IMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240
           +  Q+ E    I   R+E +  L +L   I E +   +E F  +K   +  ++    Q  
Sbjct: 181 LTEQVIEKATAILNHRLEFMEQLEALARPIHEQISLGREEFS-LKYQTSLSIEKGMSQD- 238

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +KE Y K+    +K +     TL+GPHR DLI    DK +    GS G+Q+  ++ + 
Sbjct: 239 -EVKELYQKQFEAVQKRELEQASTLVGPHRDDLIFYLNDKPVQ-NFGSQGQQRSTVLSLK 296

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           LA   L++  TG  PILLLD++ + LD+D++  L + + +   Q F+T T
Sbjct: 297 LAEIELMNIATGEYPILLLDDVLSELDDDRQTHLIKAIEN-KVQTFITTT 345


>gi|255535750|ref|YP_003096121.1| DNA recombination and repair protein RecF [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341946|gb|ACU08059.1| DNA recombination and repair protein RecF [Flavobacteriaceae
           bacterium 3519-10]
          Length = 359

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 174/374 (46%), Gaps = 30/374 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L + +F+N++   L F  Q   FVG+NGVGKTN+L+A+ +LS G+ F      D+  
Sbjct: 3   IQKLQLIQFKNHSQQTLEFSPQINCFVGNNGVGKTNVLDALHYLSVGKSF--LGNTDLNN 60

Query: 67  IGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH---LRI 122
           I +   FF+   ++   E    I I++  RD +  + ++ ND   +  D +  H   L  
Sbjct: 61  IQTDGDFFAIEGKIYDGEKENIIKIQM-PRDAK--KLIKKND---KSYDRMADHIGFLPS 114

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYF 178
             + P    + S     RR+FLD M+   D  +   +I +++ ++ RN LL       YF
Sbjct: 115 VIISPYDSNLISDSGESRRKFLDAMISQTDSDYLYNLIQYQKTIQQRNALLKSFAKNRYF 174

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D          +   G  I I R E ++++  LI  Y    +  + ++++    D K   
Sbjct: 175 DPENLEIYNEPLIRFGTAIFIKRTEFLDSILPLIQSYYSIISNGNEQVTVDYHSDLK-TS 233

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           SF  L  E   K       D +   T  G H+ DL+ +    ++    GS G+QK  L+ 
Sbjct: 234 SFEELLNENLDK-------DRVLTYTSKGIHKDDLVFEMNGNSLK-RTGSQGQQKSFLIA 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK----S 353
           + L+    I   TG  P+LLLD+I   LD+ +   L  +V  +   QIF+T T+K    S
Sbjct: 286 LKLSQMNRIKELTGKTPVLLLDDIFDKLDDSRVLQLIELVNREHFGQIFITDTNKERTES 345

Query: 354 VFDSLNETAKFMRI 367
           V   +NE +K   I
Sbjct: 346 VVRKINEESKIFEI 359


>gi|331267332|ref|YP_004326962.1| recombination protein F [Streptococcus oralis Uo5]
 gi|326684004|emb|CBZ01622.1| recombination protein F [Streptococcus oralis Uo5]
          Length = 365

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 169/370 (45%), Gaps = 22/370 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +        R+ G+      SI LE       R  ++N +    + +   H+ +    
Sbjct: 63  FDNEQL-----RLSGLLQKKTSSIPLEIDLTPKGRVTKVNYLKQARLSDYIGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +    D ++ S 
Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALK 244
           ++ Q+ E G ++   R++ I  L     ++ QK+   H+++S     L   +  S     
Sbjct: 178 LDDQLVEYGCRVIRHRIKFIKDLE----KFGQKK---HLEISNKLEELSISYQSSVNFTD 230

Query: 245 EE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           EE     +   L   R  D   + T +GPHR D  + +   AI  + GS G+ + +++ +
Sbjct: 231 EEQLTSSFKMALEKSRSRDLFKKNTGVGPHRDD--ITFYINAIDASFGSQGQHRSLVLSV 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISN 369
           E      I N
Sbjct: 348 ENLSIFNIQN 357


>gi|259047901|ref|ZP_05738302.1| DNA replication and repair protein RecF [Granulicatella adiacens
           ATCC 49175]
 gi|259035578|gb|EEW36833.1| DNA replication and repair protein RecF [Granulicatella adiacens
           ATCC 49175]
          Length = 375

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 167/352 (47%), Gaps = 13/352 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  FRNY S++L F     +F+G+N  GKTN++E+I  L+  +  R  +  D 
Sbjct: 1   MKLTNLQLQNFRNYESVQLEFTDGVHVFIGENAQGKTNLMESIYALAMTKSHRTTN--DK 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +   FA ++G          LE +  +  +  ++N +  + +     +L +  
Sbjct: 59  ELIG---WKKDFATIKGTIEKTATKTNLELQFSKKGKIAKVNYLEQKRLSSYLGNLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G    RR+F+D  +  +   +   ++++ R+++ RN  L +         
Sbjct: 116 FAPENLTLVKGSPQNRRKFVDMELGQMSSLYLYDLVEYNRVLKQRNTYLKQLAIKKKQPD 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +   ++EL  KI   R++ +  L +L +    + +    K S++       +   
Sbjct: 176 EYLEVLSEMLSELASKIVFHRLDFMKQLEALAIPIHDQLSLGREKFSVSYQATIPLEDGL 235

Query: 241 CA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            A  +KE Y  +    +  ++    TLIGPHR DLI  Y ++     +GS G+Q+  ++ 
Sbjct: 236 TASQMKEIYMNQFKKNQTREADQATTLIGPHRDDLIF-YLNEVPVQTYGSQGQQRSTVLS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + LA   L+  +TG  P+LLLD++ + LD+D++  L + + +   Q F+T T
Sbjct: 295 LKLAEIELMKLSTGEYPLLLLDDVLSELDDDRQTHLIKAIEN-KVQTFITTT 345


>gi|225869472|ref|YP_002745420.1| DNA replication and repair protein RecF [Streptococcus equi subsp.
           zooepidemicus]
 gi|259563673|sp|C0MGR5|RECF_STRS7 RecName: Full=DNA replication and repair protein recF
 gi|225702748|emb|CAX00903.1| DNA replication and repair protein RecF [Streptococcus equi subsp.
           zooepidemicus]
          Length = 369

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 157/347 (45%), Gaps = 13/347 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK LN++ +RNY      F     +F+GDN  GKTN LEAI FLS  R  R  S  D+  
Sbjct: 3   IKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDLIY 62

Query: 67  IGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S   T  R+ G        ++LE       R  +IN +    + +    + +  
Sbjct: 63  FDERDCSISGTLERLSG-------RVQLEILLSDKGRITKINTLKQAKLSDYIGAMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L   +  DS + 
Sbjct: 116 FAPEDLQLVKGSPSLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDSDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+   G ++   R+  + +L+    ++ Q  +    KLS++      F+     +
Sbjct: 176 SVLDEQLVTYGSRVMAHRLAFVQSLAKEASKHHQAISNGLEKLSISYQASVSFEHQ-QEI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D + + T +GPHR DL+    D     A  S G+ + +++ + +A 
Sbjct: 235 YQQFMDQLKATHQRDFLRKNTGVGPHRDDLVFYINDMNANFA--SQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T
Sbjct: 293 VSLMKQLTGDNPILLLDDVMSELDNIRQTKLLEAVKKENVQTFITTT 339


>gi|295694691|ref|YP_003587929.1| DNA replication and repair protein RecF [Bacillus tusciae DSM 2912]
 gi|295410293|gb|ADG04785.1| DNA replication and repair protein RecF [Bacillus tusciae DSM 2912]
          Length = 370

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 169/365 (46%), Gaps = 25/365 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  FRNY  L+L   A   +F+G+NG GKTN+LEAI  L+  +  R    A+ 
Sbjct: 1   MRLESLRLLHFRNYPHLQLDTRAPVNVFIGENGQGKTNVLEAIDILALTKSHRTHRLAEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G   F     RV+   G +++S+ L T   R+     +  +  + + +    L +  
Sbjct: 61  IQWGE-QFALIEGRVQRNTGSSELSVTLTTSGKRAA----VAGIERQRISDYVGMLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P   ++  G    RRRFLD  +  I P + R +  + R +  RN+LL     + +   
Sbjct: 116 FTPEDLQLIKGSPQVRRRFLDMEIGQISPLYLRDLQQYVRALSQRNQLLKSANHNPTERI 175

Query: 182 ------WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
                 W    + Q+A  G +I + R + +  L     E   + +     LSL+ +    
Sbjct: 176 TDTLDIW----DDQLARHGSRIILRRAQFVRTLERHAREIHSRVSGDREVLSLS-YAKVS 230

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            +Q+   + + Y  +L   R +D     T +GPHR DL++   D+    A  S G+Q+  
Sbjct: 231 PEQTPEQVFQMYLHELRARRSLDLARGVTSVGPHRDDLVILLNDRE-AAAFASQGQQRTA 289

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI--FMTGTDKS 353
            + + LA   LI    G  P+LLLD++ + LD  ++     +V+ +G+Q+  F+T T   
Sbjct: 290 ALSLKLAEIELIREEVGEYPVLLLDDVLSELDPVRQ---VHLVSAMGAQVQTFLTTTHLE 346

Query: 354 VFDSL 358
              SL
Sbjct: 347 GLGSL 351


>gi|332971207|gb|EGK10170.1| recombination protein F [Desmospora sp. 8437]
          Length = 372

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 162/377 (42%), Gaps = 24/377 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FRN   L+L    +  +FVG N  GKTNILE++  L+ G+  R  S+ ++ R
Sbjct: 3   VERLELKQFRNIEHLKLDCSGELHMFVGPNAQGKTNILESLYVLAIGKSHRTRSHRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                     A V G E    + I+L  R  R +R    N V  R + E    L      
Sbjct: 63  WEQTGALLK-AEVSGKESARRLEIRLTPRGKRVLR----NGVEQRRLSEYIGSLTAVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS- 185
           P    I  G    RRRFLD  +  + P +   +  + +L++ RN LL E      W    
Sbjct: 118 PEDLSIVKGSPQVRRRFLDMEIGQVSPAYIYHLTRYNQLLQQRNSLLKE--LGKGWGKQT 175

Query: 186 -----IEAQMAELGVKINIARVEMINALSSLIME----YVQKENFPHIKLSLTGFLDGKF 236
                +  Q+  L   +   R   +N LS    E      Q      ++      ++   
Sbjct: 176 ALLDVLNEQLVGLSTHLWSKRFSFVNILSRWAQEIHHSITQGSESLTLQYRPLAAVEPGM 235

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           D+S  +++E   ++L   R+ +     TLIGPHR DL +   +       GS G+Q+   
Sbjct: 236 DRS--SMEEALTRELMQVREQEIQRGTTLIGPHRDDLRI-AANGTDLHTFGSQGQQRTAA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   LI   TG  PILLLD++ + LD+ ++  L   +     Q F+T T     D
Sbjct: 293 LSLKLAEIELIHQETGTYPILLLDDVLSELDDGRKTHLLEAIRG-RVQTFVTTTGLEGID 351

Query: 357 SLNETAKFMRISN-HQA 372
              ET +  RI   HQ 
Sbjct: 352 --RETLERARIRRVHQG 366


>gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF [Eubacterium rectale ATCC
           33656]
 gi|259563365|sp|C4Z940|RECF_EUBR3 RecName: Full=DNA replication and repair protein recF
 gi|238874108|gb|ACR73815.1| DNA replication and repair protein RecF [Eubacterium rectale ATCC
           33656]
          Length = 362

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 155/352 (44%), Gaps = 18/352 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + +S FRNY  L + FD +  I  GDN  GKTNILEA       +  + +   ++ R
Sbjct: 3   IKSIQLSNFRNYEKLDISFDTETNIIYGDNAQGKTNILEAAYLSGTTKSHKGSKDKEMIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +   T       E   D+ ++         + + IN + I+   EL   L I + 
Sbjct: 63  FGEDEAHIRTIVEKNDKEYRIDMHLR-----KNGAKGVAINKMPIKKASELFGILNIVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  +D  +   +  + + +  RNRLL +  +      +
Sbjct: 118 SPEDLNIIKNGPAERRRFIDLELCQLDKIYLSNLSKYNKTLVQRNRLLKDIAYRPDLIDT 177

Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           ++    Q+ E G  +   R E +N L+ +I +     +    KL L    +   D  F  
Sbjct: 178 LQVWDMQLLEYGRHVIKKRREFVNELNEIIQDIHSNISGGREKLILK--YEPSIDDIF-- 233

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
               +  +L   R  D    +T +GPHR D++    D      +GS G+Q+   + + L+
Sbjct: 234 ----FEDELLKARSRDLKLCQTTVGPHRDDMLFS-VDGVDIRKYGSQGQQRTSALSLKLS 288

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
              L+       P+LLLD++ + LD +++N L   ++D  + I  TG D+ V
Sbjct: 289 EISLVKKNINSTPVLLLDDVLSELDGNRQNYLLNSLSDTQTIITCTGLDEFV 340


>gi|73661313|ref|YP_300094.1| recombination protein F [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82581562|sp|Q4A177|RECF_STAS1 RecName: Full=DNA replication and repair protein recF
 gi|72493828|dbj|BAE17149.1| DNA repair and genetic recombination protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 371

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 168/379 (44%), Gaps = 29/379 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY S+ L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLKTLQLQNYRNYESISLNCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F S +A++EG        + L     +  + ++IN +    + +   HL +  
Sbjct: 61  IR-----FDSDYAKIEGDLSYRYGEMPLTMYITKKGKQVKINHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +  +    DS
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLSQYQRILKQKNNYLKQLQYGQKTDS 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q AE  +KI + R   IN L SL            E +     P IKL    
Sbjct: 176 TMLEVLNQQFAEYALKITLRREHFINELESLAKPIHSGITNERETLSLNYLPSIKLE--- 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                 D+S     EE    L D  + +      L GPHR DL  +  +      +GS G
Sbjct: 233 ----NKDKSETERLEEVLTILNDNMEREKDRGVCLYGPHRDDLGFN-VNGMDAQTYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   L++   G  PILLLD++ + LD+ +++ L   +     Q F+T T
Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQSHLLSTIQH-KVQTFVTTT 346

Query: 351 D-KSVFDSLNETAKFMRIS 368
               +   + + AK  RI+
Sbjct: 347 SVDGIEHEIMKNAKLYRIN 365


>gi|225028835|ref|ZP_03718027.1| hypothetical protein EUBHAL_03122 [Eubacterium hallii DSM 3353]
 gi|224953831|gb|EEG35040.1| hypothetical protein EUBHAL_03122 [Eubacterium hallii DSM 3353]
          Length = 366

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 160/351 (45%), Gaps = 22/351 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + ++ +RN+ SL++ F     IF GDN  GKTN+LE+I      R  R +   D+ R
Sbjct: 3   VESIELNNYRNFDSLKVEFSPGVNIFFGDNAQGKTNLLESIYVSGTLRSHRGSRDKDLIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +    F R + +    D+ +K         + + +N V +R   EL   + I + 
Sbjct: 63  FGEDEAHIRLFFRKDSLSHRLDVHLK-----KNKSKGVAVNGVPVRRSGELLGMMHIVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I       RRRFLD  +  ID  + ++++ + +++  RN LL +     +   +
Sbjct: 118 SPEDLSIIKEGPAGRRRFLDMELSQIDKGYMQQLVAYSKILNERNNLLKQINLYPALIDT 177

Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFC 241
           ++    Q+   G  +   R E +         Y   E    I   LTG  +  K +    
Sbjct: 178 LDGWDEQLLAAGQFLIKKREEFV---------YFLDEMMAKIHGQLTGGKEQIKVEYEKN 228

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIF 300
              E++ ++L+  R  D  S  T +GPHR DL   +    I I   GS G+Q+   + + 
Sbjct: 229 VEAEKFREQLYSKRNKDISSGTTSVGPHRDDL--RFKVGGIDIRKFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           L+  RLI   TG  PILLLD++ + LD  +++ L   + DI + I  TG D
Sbjct: 287 LSEIRLIEQVTGEKPILLLDDVLSELDAGRQSWLLESIQDIQTLISCTGLD 337


>gi|312866766|ref|ZP_07726979.1| DNA replication and repair protein RecF [Streptococcus
           parasanguinis F0405]
 gi|311097549|gb|EFQ55780.1| DNA replication and repair protein RecF [Streptococcus
           parasanguinis F0405]
          Length = 364

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 166/367 (45%), Gaps = 13/367 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+I  FRNY  L + F     IF+G N  GKTNILE+I FL+  R  R  +  D+  
Sbjct: 3   LKQLSIQHFRNYQELEVEFHPGLNIFLGQNAQGKTNILESIYFLALTRSHRTRNDRDLIY 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S  F     +V G        + LE       R  ++N +    +     H+ +    
Sbjct: 63  FESTDF-----KVSGQLQRETGPLPLEISLTPKGRITKVNHLKQAKLSNYIGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  + P +   +  +  +++ RN  L      D+++   
Sbjct: 118 PEDLQLIKGSPAGRRKFIDIELGQMKPLYLSDLSQYNHVLKQRNSYLKNSEKIDATFLEV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +++Q+A  G ++   R+E I  L +   E   + +     LS+  +    F +    ++E
Sbjct: 178 LDSQLASFGSRVIHHRLEFIKKLEAKAEEKHTRLSDNKEDLSIQ-YQSTVFSEEGNDIEE 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++   L   R+ D   + T IGPHR DL   +    +    GS G+ + V++ + LA   
Sbjct: 237 QFLSMLEKNRQKDIFRKTTSIGPHRDDLA--FFINNMNATFGSQGQHRSVVLSLKLAEIE 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   T   PILLLD++ + LD  ++  L   +++   Q F+T T     D L +  + +
Sbjct: 295 LMEEITREKPILLLDDVMSELDNYRQLQLLETISN-NIQTFITTT---TLDHLKDLPEEL 350

Query: 366 RISNHQA 372
           +I   QA
Sbjct: 351 KIFTVQA 357


>gi|260588814|ref|ZP_05854727.1| RecF protein [Blautia hansenii DSM 20583]
 gi|260540593|gb|EEX21162.1| RecF protein [Blautia hansenii DSM 20583]
          Length = 361

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 161/352 (45%), Gaps = 24/352 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  +RNY SL L FD    IF GDN  GKTNILEA    S  +  R +   ++ +
Sbjct: 3   IESIELKNYRNYNSLALEFDKGTNIFYGDNAQGKTNILEAAYLCSTTKSHRGSKDRELIK 62

Query: 67  I-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                +    F   +G+    D+ +K         + + I+ + IR   EL   L I + 
Sbjct: 63  FDADEAHIRMFVNKDGISRKIDMHLK-----KSKPKGIAIDGIPIRKASELFGLLNIVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  +D  +   +  +  ++  RN+LL +  F  S   +
Sbjct: 118 SPEDLNIIKNGPGERRRFMDLELCQLDKLYLSNLSSYNHVLNQRNKLLKDIAFQESLKDT 177

Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-- 240
           +E    Q  + G +I   R   I+ ++  IME +          S+TG  + K +  +  
Sbjct: 178 LEIWDEQFVQYGREIIETRRRFIDEING-IMEKIHS--------SITGNRE-KIELVYEP 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGI 299
               E + ++L   R+ D   ++T +GPHR D  V      I I  +GS G+Q+   + +
Sbjct: 228 SVPDENFYQELSKNREKDCRFKQTSVGPHRDDFSVKV--NGIDIRRYGSQGQQRTAALSL 285

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            L+   ++       P+LLLD++ + LD +++N L   ++ + + I  TG D
Sbjct: 286 KLSEIYMVKKVIKDMPVLLLDDVLSELDSNRQNYLLNSISHVQTMITCTGLD 337


>gi|322373988|ref|ZP_08048522.1| DNA replication and repair protein RecF [Streptococcus sp. C150]
 gi|321276954|gb|EFX54025.1| DNA replication and repair protein RecF [Streptococcus sp. C150]
          Length = 367

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 163/350 (46%), Gaps = 26/350 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++I  FRNY+   + F     IF+G N  GKTNILEAI FL+  R  R  S  ++ +   
Sbjct: 6   IDIQHFRNYSEAYVTFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQ--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F  +  ++ G        + LE       R  ++N +    + +   H+ +    P  
Sbjct: 63  --FQQSTLKLSGTVHRRSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188
            ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +    D  + S ++ 
Sbjct: 121 LQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNAYLKSTDKVDIDFLSVLDE 180

Query: 189 QMAELGVKINIARVEMINALS-------SLIMEYVQKENFPH-IKLSLTGFLDGKFDQSF 240
           Q+A+ G ++   R++ I  L        SL+   +++ N  +   +SL         Q+ 
Sbjct: 181 QLADFGARVIEHRLDFIKQLEVEADKHHSLLSNQIERLNISYESNISL---------QNH 231

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            ++++ +   L    K D   + T +GPHR DL     D  +  + GS G+Q+ +++ + 
Sbjct: 232 KSIRQAFLITLRQNHKRDIFKKNTGVGPHRDDLTFYIND--MNASFGSQGQQRSLILSLK 289

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +A   LI N TG  PILLLD++ + LD  ++  L   + D   Q FMT T
Sbjct: 290 MAEIALIRNVTGEFPILLLDDVMSELDNHRQLKLLESI-DKEVQTFMTTT 338


>gi|229551100|ref|ZP_04439825.1| recombination protein F [Lactobacillus rhamnosus LMS2-1]
 gi|258538196|ref|YP_003172695.1| DNA replication and repair protein recF [Lactobacillus rhamnosus Lc
           705]
 gi|229315561|gb|EEN81534.1| recombination protein F [Lactobacillus rhamnosus LMS2-1]
 gi|257149872|emb|CAR88844.1| DNA replication and repair protein recF [Lactobacillus rhamnosus Lc
           705]
          Length = 372

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 167/357 (46%), Gaps = 23/357 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNYA++   F  +  + +G+N  GKTN+LEAI  L+  R  R  +  ++
Sbjct: 1   MKLDHLTLKNYRNYATVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FARV G       + +LE       +  +I+ +    + +   H  +  
Sbjct: 61  IRFGSD-----FARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D     + P++   +  ++  ++ RN  L +  +    D 
Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLD 233
            +   +   +A  G ++  AR +++  +S         I +  +K  F + +  +T  L 
Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAY-QTQVTADLR 234

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
              +Q + AL   +AK+    R+++  +  +L+GPHR D++    DK +    GS G+Q+
Sbjct: 235 QDSEQVYEALGALFAKQ--QSREIEQGT--SLVGPHRDDVLFIVNDKDVA-NFGSQGQQR 289

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              + + LA   L+ + TG  P+LLLD++ + LD  ++  L + +     Q F+T T
Sbjct: 290 TTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAIRQTHLLKAI-QAKVQTFLTTT 345


>gi|312897425|ref|ZP_07756849.1| putative recombination protein F [Megasphaera micronuciformis
           F0359]
 gi|310621486|gb|EFQ05022.1| putative recombination protein F [Megasphaera micronuciformis
           F0359]
          Length = 370

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 162/353 (45%), Gaps = 16/353 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I+ LNI   RNY    + F A   +  G+NG GKTN+LEA+     G+ +R  +  D+ 
Sbjct: 5   RIRLLNI---RNYEEADISFPATVIVLYGNNGQGKTNLLEALYTGCIGKSYRGVTDVDLL 61

Query: 66  RIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           R  +   S    F R +  +   +I I     + + V    +ND  +R   EL   L+  
Sbjct: 62  RKSATNGSVIIDFIRNKTEQ---NIKIVFSLHEKKRV---SVNDTKVR-TRELFGILQEV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   ++  G    RRRFLD  +   +P + + ++ + + +  RN LL    ++    
Sbjct: 115 MFSPEDLQLIKGNPALRRRFLDMEISQTNPSYYKMLLQYNKAVSQRNILLKRMKYEKDIS 174

Query: 184 -SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+A L   I   R E +  +S ++ E  +        + LT ++      +   
Sbjct: 175 LHEWDLQLARLAAYIVNKRKESLEKISVVVKEIYRNLTSEKEIVKLT-YIQPYKGSTVED 233

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            ++ Y + L   R+ D   + T IGPHR D +V+  D       GS G+Q+  ++ + +A
Sbjct: 234 TEDVYYELLRKNREKDIYRQSTSIGPHRDDFVVE-NDLGELKKFGSQGQQRTAVLALKMA 292

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
               I    G  PILLLD++ + LDE++RNAL   V     Q F+T TD S F
Sbjct: 293 ELEFIKKENGEYPILLLDDVMSELDEERRNALLSFVQG-KVQTFITTTDDSFF 344


>gi|195979034|ref|YP_002124278.1| recombination protein F [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|226737837|sp|B4U113|RECF_STREM RecName: Full=DNA replication and repair protein recF
 gi|195975739|gb|ACG63265.1| DNA replication and repair protein RecF [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 369

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 13/347 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK LN++ +RNY      F     +F+GDN  GKTN LEAI FLS  R  R  S  D+  
Sbjct: 3   IKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDLIY 62

Query: 67  IGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S   T  R+ G        ++LE       R  +IN +    + +    + +  
Sbjct: 63  FDERDCSISGTLERLSG-------RVQLEILLSDKGRITKINTLKQAKLSDYIGAMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L   +  DS + 
Sbjct: 116 FAPEDLQLVKGSPSLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDSDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+   G ++   R+  + +L+    ++ Q  +    KLS++      F+     +
Sbjct: 176 SVLDEQLVTYGSRVMAHRLAFVQSLAKEANKHHQAISNGLEKLSISYQASVSFEHQ-QEI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D + + T +GPHR DLI  +    +     S G+ + +++ + +A 
Sbjct: 235 YQQFMDQLKTTHQRDFLRKNTGVGPHRDDLI--FYINGMNANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T
Sbjct: 293 VSLMKQLTGDNPILLLDDVMSELDNIRQTKLLEAVKKENVQTFITTT 339


>gi|330813295|ref|YP_004357534.1| DNA recombination and repair protein RecF [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327486390|gb|AEA80795.1| DNA recombination and repair protein RecF [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 362

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 176/378 (46%), Gaps = 36/378 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KIK  N   F+++        + + +  G+NG+GKTN+LE++SF S  +G R     +  
Sbjct: 6   KIKLQN---FKSHTLFEKNIPSNNIVIHGNNGIGKTNLLESLSFFSNSKGMRANKLENFL 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETR--------------DDRSVRCLQINDVVIR 111
           +    +  S FA+ E     ++ S  +  +              D +    LQI ++V  
Sbjct: 63  Q-KQNNIQSEFAQAECQLKQSNYSTNISYKIYKQADQISKNFFIDSKKSSNLQIANLVNF 121

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
           +           WL P MD+I       +++F+D+++  ++    R + DF++L   R  
Sbjct: 122 I-----------WLSPHMDKIMYEEGSIKKKFIDKIISNLNQDFSRYLSDFKKLSEERIA 170

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LLT  + D  W S +E++MA L   I I R + I  L+ L  E ++   F   K++++  
Sbjct: 171 LLTNSH-DIKWISIVESKMAILFYLILIERRKKIKDLNILAEEKLKL--FSRFKINISNE 227

Query: 232 LDGK-FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           L+   FD+  C +  E  K  F+ R +D+  +R    P+   +      K +     STG
Sbjct: 228 LEKYLFDEKKCII--EIEKIFFNNRSLDTSIKRNTFSPNTDRVTFFNRTKNLNSELCSTG 285

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           EQK +L+ I LA   +         ILL DEIS+H+DE      F  V    +Q + TGT
Sbjct: 286 EQKSILLSIILAFGWMYK-QRNIQFILLFDEISSHIDEKNMENFFTEVAKFETQAWYTGT 344

Query: 351 DKSVFDSLNETAKFMRIS 368
            K++F  ++  A F+ ++
Sbjct: 345 KKNIFQVIDNKAFFIDLA 362


>gi|225871475|ref|YP_002747422.1| DNA replication and repair protein RecF [Streptococcus equi subsp.
           equi 4047]
 gi|254790489|sp|C0MBG1|RECF_STRE4 RecName: Full=DNA replication and repair protein recF
 gi|225700879|emb|CAW95638.1| DNA replication and repair protein RecF [Streptococcus equi subsp.
           equi 4047]
          Length = 369

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 13/347 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK LN++ +RNY      F     +F+GDN  GKTN LEAI FLS  R  R  S  D+  
Sbjct: 3   IKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDLIY 62

Query: 67  IGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S   T  R+ G        ++LE       R  +IN +    + +    + +  
Sbjct: 63  FDERDCSISGTLERLSG-------RVQLEILLSDKGRITKINTLKQAKLSDYIGAMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L   +  D+ + 
Sbjct: 116 FAPEDLQLVKGSPNLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDNDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+   G ++   R+  + +L+    ++ Q  +    KLS++      F+     +
Sbjct: 176 SVLDEQLVTYGSRVMAHRLAFVQSLAKEANKHHQAISNGLEKLSISYQASVSFEHQ-QEI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D + + T +GPHR DL+    D     A  S G+ + +++ + +A 
Sbjct: 235 YQQFMNQLKTTHQRDFLRKNTGVGPHRDDLVFYINDMNANFA--SQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T
Sbjct: 293 VSLMKQLTGDNPILLLDDVMSELDNTRQTKLLGAVKKENVQTFITTT 339


>gi|322388468|ref|ZP_08062071.1| recombination protein F [Streptococcus infantis ATCC 700779]
 gi|321140781|gb|EFX36283.1| recombination protein F [Streptococcus infantis ATCC 700779]
          Length = 363

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 167/371 (45%), Gaps = 20/371 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+I +FRNY  + + F+ +  +FVG N  GKTN+LE+I FL+  R  R  +  ++ +
Sbjct: 3   LKNLSIKQFRNYRDVEVNFNPKLNVFVGRNAQGKTNLLESIYFLALTRSHRTKTDKNLIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F     +V G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  -----FEEEQLQVSGILQKKTASIPLEIDLTQKGRITKVNYLKQARLSDYIGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L +    D ++ S 
Sbjct: 118 PEDLQLVKGAPAIRRKFIDIELGQIKPIYLSDLSSYNHVLKQRNTYLKSTQNIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFDQSF 240
           ++ Q+ E G ++   R + I  +     +       Q EN          F+D K     
Sbjct: 178 LDDQLVEYGCRVMNHRADFIQKMELFGKKKHFDISDQLENLSIRYQPFVNFVDKK----- 232

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L E +   L   R  D   + T +GPHR D+I  +    +  + GS G+ + +++ I 
Sbjct: 233 -HLAESFHIALQKSRPRDLFKKNTGVGPHRDDMI--FMINGMEASFGSQGQHRSLVLSIK 289

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L +
Sbjct: 290 LAEIELMESITKESPILLLDDVMSELDNTRQLKLLETISH-NIQTFITTTSLDHLQNLPD 348

Query: 361 TAKFMRISNHQ 371
                 + N Q
Sbjct: 349 NLSVFTVDNGQ 359


>gi|227550643|ref|ZP_03980692.1| recombination protein F [Enterococcus faecium TX1330]
 gi|257896290|ref|ZP_05675943.1| recombination protein F [Enterococcus faecium Com12]
 gi|227180222|gb|EEI61194.1| recombination protein F [Enterococcus faecium TX1330]
 gi|257832855|gb|EEV59276.1| recombination protein F [Enterococcus faecium Com12]
          Length = 374

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 166/360 (46%), Gaps = 29/360 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  --IG---WNDDQAMIQGEIAKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKL--SLTGF 231
            +   +  Q+A  G K+  AR + I       N+L   I  + ++    ++    SL   
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFIKRLEFWANSLHQQITHHKEQLEIEYLTAVDSLETH 235

Query: 232 LDGKFDQSFCALKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
              +  + F AL  +  KK LF G         T +GPHR DL   + ++     +GS G
Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRG--------TTTVGPHRDDLSF-FINQKNVQTYGSQG 286

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   LI   TG  PILLLD++ + LD++++  L   + +   Q F+T T
Sbjct: 287 QQRTTALSIKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETI-EGKVQTFLTTT 345


>gi|225575694|ref|ZP_03784304.1| hypothetical protein RUMHYD_03787 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037098|gb|EEG47344.1| hypothetical protein RUMHYD_03787 [Blautia hydrogenotrophica DSM
           10507]
          Length = 361

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 158/355 (44%), Gaps = 24/355 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  FRNY SL L FD    I  GDN  GKTN+LEA+      +  + +   ++  
Sbjct: 3   IESVQLKNFRNYQSLELEFDQGTNILFGDNAQGKTNVLEAVYLCGTTKSHKGSKDREMIH 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                S      + E +    D+ +K         + + IN + I+   EL   +   + 
Sbjct: 63  FDEEESHIRMIVKKEHISYKIDMHLK-----KNKAKGIAINGIPIKKARELFGIVNFVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRFLD  +  +D  +   + ++ R++  RN+LL +  F      +
Sbjct: 118 SPEDLNIIKNGPGERRRFLDMELCQLDRIYLNDLANYNRIVNQRNKLLKDLAFQPELQDT 177

Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           ++    Q+A  G KI   R   +  L+ LI +         I  +LTG  + K + ++  
Sbjct: 178 MDIWNQQLASHGKKIIEKRYSFVKELNELIQK---------IHQNLTGGTE-KLEVTYEP 227

Query: 243 LKE--EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGI 299
             E   +  +L    + D   R T +GPHR DL V      I I  +GS G+Q+   + +
Sbjct: 228 NVESNNFEGELQRQNRRDMQLRTTTVGPHRDDLCVTV--NGIDIRRYGSQGQQRTAALSL 285

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            LA   L+       P+LLLD++ + LD +++N L   + DI + I  TG D  V
Sbjct: 286 KLAEIYLVKKLIKDTPVLLLDDVLSELDRNRQNYLLDSIHDIQTLITCTGLDDFV 340


>gi|296118606|ref|ZP_06837184.1| RecF protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295968505|gb|EFG81752.1| RecF protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 418

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 169/363 (46%), Gaps = 33/363 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L++ +FR++  L+L  D    +FVG NG GKTNI+EA+ +++     R    A + R
Sbjct: 3   IRELDLRDFRSWTELKLDLDPGIVLFVGRNGFGKTNIVEALGYVAHLSSHRVNQDAPLVR 62

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+ S   S  A  +G E  A + IK       +    QIN    +   EL   ++    
Sbjct: 63  QGTASARVSATAVNQGRELTAHMLIK-----PHAANQAQINRTRCKSPRELLGVVKTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178
            P    +  G   ERRR+LD ++    PR      D+++++R RN LL         GY 
Sbjct: 118 SPEDLALVRGEPAERRRYLDDIIATRTPRLAGVKADYDKVLRQRNALLKSASAAMRRGYG 177

Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLI---MEYVQKENFP-HIKLSL 228
           D+   S++      + Q+A LG ++  AR+E+I+ LS LI    E +  E+ P HI    
Sbjct: 178 DTEGASALATLDVWDTQLATLGAQVINARLELIDELSDLIPAAYEGLAPESRPAHIAYKA 237

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHG 287
           T       D S   + E         ++   + R  +L+GPHR DL + +   A      
Sbjct: 238 T------IDTSDRDVLEAVMLAELGTKRQREIERGISLVGPHRDDLEL-HLGTAPAKGFA 290

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE     + +  A  +L+ +     PIL+LD++ + LD  +R  L ++  D+  Q+F+
Sbjct: 291 SHGETWSYAIALRFAEFQLLRSEDS-DPILILDDVFSELDAKRREKLVKLAADV-EQVFI 348

Query: 348 TGT 350
           T  
Sbjct: 349 TAA 351


>gi|118443917|ref|YP_879295.1| recombination protein F [Clostridium novyi NT]
 gi|166220706|sp|A0Q3U3|RECF_CLONN RecName: Full=DNA replication and repair protein recF
 gi|118134373|gb|ABK61417.1| recF protein [Clostridium novyi NT]
          Length = 361

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 177/370 (47%), Gaps = 23/370 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  FRNY  L L   +   +F+GDN  GKTNILE+I + S G+  R     ++ +
Sbjct: 3   IKNLELINFRNYEILSLKLHSGINVFIGDNAQGKTNILESIYYCSIGKSHRTNKDKELIK 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  ++ S +   E ++   DI I  E +     + +++N + ++ + +L     +   
Sbjct: 63  WGARDAYISVYISKERLDKKIDIKIFKEGK-----KGVRVNSIKLKTISDLIGVFNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   +I       RR+FLD  +  ++ ++   ++ + +++  RN +L +   ++     
Sbjct: 118 SPEDLKIVKESPSYRRKFLDIELSKLNKKYYYSLVRYNKVLNERNTILRKWNSNTEVTEV 177

Query: 186 IEAQMAELGVKINIARVEMINALS---SLIMEYV--QKENFPHIKLSLTGFLDGKFDQSF 240
            + Q+++ G  I   R++ I +LS   + I + +  QKEN     ++    L+   +  +
Sbjct: 178 YDHQLSKYGSYIIKERLKYIESLSIRGNKIHKDITSQKENIEFKYITSIKDLNNIQNDFY 237

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E   K    G         T  GPHR D  V+  +   T   GS G+Q+  ++ I 
Sbjct: 238 NLLRENVKKDFEKG--------STSFGPHRDDFAVN-INNTDTRTFGSQGQQRTAVLTIK 288

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLN 359
           LA   +I   TG  P+LLLD++ + LD +++  +   + +   Q  +TGT    + + L+
Sbjct: 289 LASLEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIREF--QTIITGTGLIDIREYLD 346

Query: 360 ETAKFMRISN 369
           +  K  +++N
Sbjct: 347 DHVKLFKVTN 356


>gi|182416742|ref|ZP_02624843.2| DNA replication and repair protein RecF [Clostridium butyricum
           5521]
 gi|237669606|ref|ZP_04529584.1| DNA replication and repair protein RecF [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379399|gb|EDT76894.1| DNA replication and repair protein RecF [Clostridium butyricum
           5521]
 gi|237654840|gb|EEP52402.1| DNA replication and repair protein RecF [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 360

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 172/371 (46%), Gaps = 18/371 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-VT 65
           IK + ++ +RNY +L L       +F+GDN  GKTN+LEAI + +  +  R +   + + 
Sbjct: 3   IKNIMLANYRNYETLSLELSKNVNVFIGDNAQGKTNVLEAIYYCAFAKSHRTSKDRELIN 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                ++ S     + ++   DI+I    RD +  + +++N + +  + EL     +   
Sbjct: 63  WKNDKAYISLLVGKDRLDKRIDINI---LRDGK--KAIKVNSIKVAKIGELFGTFNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   ++       RR+ LD  +  I+ ++   ++ + +++  RN LL    F+      
Sbjct: 118 SPEDLKVIKEAPNLRRKLLDMELSQINKKYYFNLVQYNKILNERNILLKSRNFNEDVLEV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFDQSFCA 242
            + Q+ +    I   R+E I+ + +   E + +E   +   IK   +  +D         
Sbjct: 178 YDLQLVDYADYIISKRLEYIDKI-NFYGEKIHREITADKEEIKFKYSCNVD------LTN 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            K  Y KKL D  K D     T +GPHR D  V + +       GS G+Q+  ++ +  +
Sbjct: 231 YKNNYLKKLQDNIKRDREKGLTSVGPHRDDFNV-FLNDIDAKTFGSQGQQRTAILTMKFS 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
             ++I   TG  P+LLLD++ + LD +++  +   +  I + I  TG +  + D L++ A
Sbjct: 290 SLKIIKEITGEYPVLLLDDVLSELDVNRKKYILSTIHGIQTIITCTGIE-VLSDYLDDNA 348

Query: 363 KFMRISNHQAL 373
           K   +S+ + L
Sbjct: 349 KIFNVSSGRIL 359


>gi|257878649|ref|ZP_05658302.1| recombination protein F [Enterococcus faecium 1,230,933]
 gi|257812877|gb|EEV41635.1| recombination protein F [Enterococcus faecium 1,230,933]
          Length = 374

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 166/357 (46%), Gaps = 23/357 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  --IG---WTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQTRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLD 233
            +   +  Q+A  G K+  AR + +       N+L   I    QKE    +++     +D
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITH--QKE---QLEIEYLTAVD 230

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                +   ++E++   L   +K D     T +GPHR DL   + ++     +GS G+Q+
Sbjct: 231 SLETHTQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSF-FINQKNVQTYGSQGQQR 289

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              + + LA   LI   TG  PILLLD++ + LD++++  L   + +   Q F+T T
Sbjct: 290 TTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETI-EGKVQTFLTTT 345


>gi|257888092|ref|ZP_05667745.1| recombination protein F [Enterococcus faecium 1,141,733]
 gi|293379371|ref|ZP_06625515.1| DNA replication and repair protein RecF [Enterococcus faecium
           PC4.1]
 gi|257824146|gb|EEV51078.1| recombination protein F [Enterococcus faecium 1,141,733]
 gi|292641894|gb|EFF60060.1| DNA replication and repair protein RecF [Enterococcus faecium
           PC4.1]
          Length = 374

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 166/360 (46%), Gaps = 29/360 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  --IG---WNDDQAMIQGEIAKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKL--SLTGF 231
            +   +  Q+A  G K+  AR + I       N+L   I  + ++    ++    SL   
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFIKRLEFWANSLHQQITHHKEQLEIEYLTAVDSLETH 235

Query: 232 LDGKFDQSFCALKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
              +  + F AL  +  KK LF G         T +GPHR DL   + ++     +GS G
Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRG--------TTTVGPHRDDLSF-FINQKNVQTYGSQG 286

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + + LA   LI   TG  PILLLD++ + LD++++  L   + +   Q F+T T
Sbjct: 287 QQRTTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETI-EGKVQTFLTTT 345


>gi|160946607|ref|ZP_02093810.1| hypothetical protein PEPMIC_00565 [Parvimonas micra ATCC 33270]
 gi|158446991|gb|EDP23986.1| hypothetical protein PEPMIC_00565 [Parvimonas micra ATCC 33270]
          Length = 366

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 168/358 (46%), Gaps = 33/358 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++ FRN   +   F     +FVG NG+GKTN+LEAI        FR+A   D    G 
Sbjct: 6   IHLTNFRNLKDISFEFKENINVFVGKNGIGKTNVLEAIYISLVASSFRQAKQEDFISFGE 65

Query: 70  P-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
             +   TF R +G E      I     DD+  +  +I+D+ I+ V+EL     +    P 
Sbjct: 66  NFTKVDTFVREKGFEN----KISFLYTDDKK-KVFKIDDIKIKSVNELYDFSNVIGFFPD 120

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             +I +     RR F D  +  +   +++++  +  ++  RN LL      S +   + A
Sbjct: 121 ELKIITESPNFRRNFFDSFIMKMTKGYKQKLNLYRNVIFRRNLLLKGMNLSSFYKQEMNA 180

Query: 189 ---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL--------DGKFD 237
              ++A L  +I++ R ++I+ ++  +       NF H +LS             + K  
Sbjct: 181 LTKKLALLCYEISMERKKLIDLINKEV-------NFIHQQLSGETLYIEYESILSNHKRS 233

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVV 295
           ++ C   +E  +      K+DS ++ T  G H+ +   I++  D     +  S G+++ +
Sbjct: 234 ENECL--KEILENFSKSYKIDSENKITSFGIHKENFKFILNGNDAK---SFSSQGQKRNI 288

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           ++ I +    +     G  PI+LLD++ + LDED+R  +   +TD  +Q+F+T TDKS
Sbjct: 289 IITIKMCQKNIFEEYKGVKPIILLDDLFSELDEDRRYEILEYLTD--NQVFITTTDKS 344


>gi|315640353|ref|ZP_07895469.1| recombination protein F [Enterococcus italicus DSM 15952]
 gi|315483889|gb|EFU74369.1| recombination protein F [Enterococcus italicus DSM 15952]
          Length = 373

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 166/364 (45%), Gaps = 38/364 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  FRNY  L+L F     IF+G+N  GKTN+LE+I  L+  R  R  +  ++
Sbjct: 1   MRLNSLTLRHFRNYDELQLPFAKDLIIFLGENAQGKTNLLESIYVLAMTRSHRTTNEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A + G+      +I LE    +  R  ++N +  + +      L +  
Sbjct: 61  IEWDCAE-----AYLAGVVEKKQQTIPLELGLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  ID  +   ++ ++++++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGTPQLRRKFLDMEIGQIDSVYLYNLVQYQQVLKQRNQYLKQLAEKKQTDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGF-- 231
            +   +  Q+   G KI   R+  +       N L  LI +  +KE       +   F  
Sbjct: 176 LYLDILTEQLVTFGSKILWTRINFVKKLEYWANQLHQLISQ--EKETLTLHYDATVAFEE 233

Query: 232 -----LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                ++  + Q+F A++   AK+LF  R+M      TLIGPHR +L+     K +   +
Sbjct: 234 ANLADIEAAYSQAFAAIR---AKELF--RQM------TLIGPHRDELVFFINGKNVQ-TY 281

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           GS G+Q+   + + LA   L+   TG  PILLLD++ + LD+ ++  L   + +   Q F
Sbjct: 282 GSQGQQRTTALSVKLAEIDLMKAETGEYPILLLDDVMSELDDSRQVHLLEAI-EGKVQTF 340

Query: 347 MTGT 350
           +T T
Sbjct: 341 LTTT 344


>gi|116493578|ref|YP_805312.1| recombination protein F [Lactobacillus casei ATCC 334]
 gi|227533503|ref|ZP_03963552.1| recombination protein F [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|122264959|sp|Q03D52|RECF_LACC3 RecName: Full=DNA replication and repair protein recF
 gi|116103728|gb|ABJ68870.1| DNA replication and repair protein RecF [Lactobacillus casei ATCC
           334]
 gi|227188832|gb|EEI68899.1| recombination protein F [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 371

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 168/357 (47%), Gaps = 23/357 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNYA++   F  +  + +G N  GKTN+LE+I  L+  R  R  +  ++
Sbjct: 1   MKLDHLVLKNYRNYAAVDTTFSPEINVLIGANAQGKTNLLESIYVLALARSHRTNNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FARV G       S +LE       +  +I+ +    + +   H  +  
Sbjct: 61  IRFGSE-----FARVSGQVSRQSGSHQLELIISHQGKRARIDRIEQPKLSQYLGHFNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D     + P++   +  ++  ++ RN  L +  +    D 
Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKE----NFPHIKLSLTGFLD 233
            +   +   +A  G ++  AR +++  +S   + I + + K     +F + +  +   L 
Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLETMSDYAATIQQDITKGRESLHFSY-QTQVDPSLR 234

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           G  +Q + AL E +AK+    R+++  +  +L+GP R D++    DK +    GS G+Q+
Sbjct: 235 GNSEQVYTALGEMFAKQ--QAREIEQGT--SLVGPQRDDVLFIVNDKDVA-NFGSQGQQR 289

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              + + LA   L+ + TG  P+LLLD++ + LD  ++  L + +     Q F+T T
Sbjct: 290 TTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAARQTHLLKAI-QTKVQTFLTTT 345


>gi|229826861|ref|ZP_04452930.1| hypothetical protein GCWU000182_02245 [Abiotrophia defectiva ATCC
           49176]
 gi|229788479|gb|EEP24593.1| hypothetical protein GCWU000182_02245 [Abiotrophia defectiva ATCC
           49176]
          Length = 364

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 171/363 (47%), Gaps = 36/363 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK L +++FRN  ++ + FD    I  GDN  GKTNILE+I      R  + +   ++
Sbjct: 1   MRIKSLALNDFRNIENISIEFDKGLNIIYGDNAQGKTNILESIYVAGTTRSHKGSKDKEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRD-DRSV---------RCLQINDVVIRVVD 114
            ++G              E  A I I LE  D DR +         + + ++ + +    
Sbjct: 61  IKLG--------------EDEAHIRIILEKDDLDRKIDMHLKKSKSKGVAVDGIPVHKSA 106

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           ++   +++ +  P    +      ERRRF+D  +  I+  +   +  + +++  RN LL 
Sbjct: 107 DIFGIVQLIFFSPEDLSMIKDGPAERRRFIDMELSQIEKIYLYNLSKYNKILTQRNNLLK 166

Query: 175 EGYFDSSWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           +  +D+    +++    Q+   G++I  +R + I+ L+ +I          H KL+  G 
Sbjct: 167 QISYDTGLSDTLDVWDEQLVSTGLEIIKSRRKFISELNEIIKPI-------HEKLT-GGK 218

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
            + + + +    +E++  KL  GR  D   + TL GP R D+   Y +K     +GS G+
Sbjct: 219 EELEIEYNPNVTEEDFKDKLKSGRNSDIYQKTTLTGPQRDDITF-YINKNDVRKYGSQGQ 277

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           Q+   + + L+   L    TG  PILLLD++ + LD  ++N L   + DI + I  TG +
Sbjct: 278 QRSTALSLKLSEIELFKKKTGDNPILLLDDVLSELDRSRQNYLIESIGDIQTIITCTGLE 337

Query: 352 KSV 354
           + V
Sbjct: 338 EFV 340


>gi|219853347|ref|YP_002470469.1| hypothetical protein CKR_0004 [Clostridium kluyveri NBRC 12016]
 gi|219567071|dbj|BAH05055.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 367

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 172/364 (47%), Gaps = 29/364 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK+L +  FRNY  L + FD    IFVGDN  GKTNILE++ + S G+  R +   ++  
Sbjct: 6   IKYLKLINFRNYKELDIEFDKNINIFVGDNAQGKTNILESMYYCSIGKSPRTSKDKELIN 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +     ++ +V  ++ L +  I+++   +   + + IN + +  + EL   L +    
Sbjct: 66  WDNKE---SYIKVHILKKLFNKKIEIKIFKEGK-KGININSIKVSKLSELMGVLNVVMFS 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P   +I     + RR+FLD  +     ++   ++ + +++  RN +L +     Y D   
Sbjct: 122 PEDLKIIKESPVYRRKFLDIELCKFSKKYYYGLVQYNKVLTARNIILKKWNKGNYID--I 179

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC- 241
               + Q+A+ G  I   R   +  LS       +K    H  ++ +G  + +F    C 
Sbjct: 180 LQVYDKQLAKYGEVIIKLRNNYLKKLS-------EKGKVIHSDIT-SGIENIEFKYMTCL 231

Query: 242 ----ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVL 296
                ++++  K L   RK D     TL GPHR D IV+     + + + GS G+Q+  +
Sbjct: 232 TNFDNIEDDLFKILEFNRKKDIYKGITLYGPHRDDFIVNI--NGVNVRNFGSQGQQRTSI 289

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KS 353
           + +  A   +I    G  P+LLLD++ + LD++++  +   + DI + I  TG D   KS
Sbjct: 290 LTMKFASLEIIKEIIGEYPVLLLDDVLSELDKNRQKYILSSIKDIQTFITCTGIDDIKKS 349

Query: 354 VFDS 357
           + D 
Sbjct: 350 IIDE 353


>gi|153952674|ref|YP_001393439.1| recombination protein F [Clostridium kluyveri DSM 555]
 gi|189039621|sp|A5N460|RECF_CLOK5 RecName: Full=DNA replication and repair protein recF
 gi|146345555|gb|EDK32091.1| RecF [Clostridium kluyveri DSM 555]
          Length = 364

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 172/364 (47%), Gaps = 29/364 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK+L +  FRNY  L + FD    IFVGDN  GKTNILE++ + S G+  R +   ++  
Sbjct: 3   IKYLKLINFRNYKELDIEFDKNINIFVGDNAQGKTNILESMYYCSIGKSPRTSKDKELIN 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +     ++ +V  ++ L +  I+++   +   + + IN + +  + EL   L +    
Sbjct: 63  WDNKE---SYIKVHILKKLFNKKIEIKIFKEGK-KGININSIKVSKLSELMGVLNVVMFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P   +I     + RR+FLD  +     ++   ++ + +++  RN +L +     Y D   
Sbjct: 119 PEDLKIIKESPVYRRKFLDIELCKFSKKYYYGLVQYNKVLTARNIILKKWNKGNYID--I 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC- 241
               + Q+A+ G  I   R   +  LS       +K    H  ++ +G  + +F    C 
Sbjct: 177 LQVYDKQLAKYGEVIIKLRNNYLKKLS-------EKGKVIHSDIT-SGIENIEFKYMTCL 228

Query: 242 ----ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVL 296
                ++++  K L   RK D     TL GPHR D IV+     + + + GS G+Q+  +
Sbjct: 229 TNFDNIEDDLFKILEFNRKKDIYKGITLYGPHRDDFIVNI--NGVNVRNFGSQGQQRTSI 286

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KS 353
           + +  A   +I    G  P+LLLD++ + LD++++  +   + DI + I  TG D   KS
Sbjct: 287 LTMKFASLEIIKEIIGEYPVLLLDDVLSELDKNRQKYILSSIKDIQTFITCTGIDDIKKS 346

Query: 354 VFDS 357
           + D 
Sbjct: 347 IIDE 350


>gi|205371909|ref|ZP_03224729.1| recombination protein F [Bacillus coahuilensis m4-4]
          Length = 372

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 171/370 (46%), Gaps = 23/370 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L++  +RNY +  L F+ +  +F+G N  GKTNI+E+I  L+  +  R ++  D+ R
Sbjct: 3   IQELSVENYRNYETESLEFENRVNVFLGQNAQGKTNIMESIYVLAMAKSHRTSNDKDLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                + S +AR++G     + SI LE    +  +  ++N +    + +   ++ +    
Sbjct: 63  -----WDSEYARIKGRIQKRNGSIPLELTISKKGKKAKLNHLEQSKLSQYIGNMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDSSW 182
           P    +  G    RRRF+D  +  + P +   +  + ++++ RN  L +       D + 
Sbjct: 118 PEDLNLVKGSPQVRRRFIDMEIGQVSPVYLHDINQYNKILQQRNSYLKQAQQRKKVDETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
              +  Q  ++ VKI   R + ++    L+ E+ +        N   + +S    +    
Sbjct: 178 LDVLTDQFIQVAVKIVQKRFQFVH----LLEEWAKPIHSGISRNLEELTISYKPSVHVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           DQ +  + E + ++  + R+ +     TL GPHR DL      + +    GS G+Q+   
Sbjct: 234 DQDWSKMIEVFEERTKEVREREKERGVTLFGPHRDDLEFRVNGRDVQ-TFGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   LI +  G  PILLLD++ + LD+ +++ L   +     Q F+T T     D
Sbjct: 293 LSVKLAEIELIHSEIGEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSTEGID 351

Query: 357 --SLNETAKF 364
             +L E A F
Sbjct: 352 HQTLKEAATF 361


>gi|191636828|ref|YP_001985994.1| recombination protein F [Lactobacillus casei BL23]
 gi|301065130|ref|YP_003787153.1| recombinational DNA repair ATPase [Lactobacillus casei str. Zhang]
 gi|226737807|sp|B3W6Q9|RECF_LACCB RecName: Full=DNA replication and repair protein recF
 gi|190711130|emb|CAQ65136.1| DNA replication and repair protein recF [Lactobacillus casei BL23]
 gi|300437537|gb|ADK17303.1| Recombinational DNA repair ATPase (RecF pathway) [Lactobacillus
           casei str. Zhang]
 gi|327380866|gb|AEA52342.1| DNA replication and repair protein recF [Lactobacillus casei LC2W]
 gi|327384031|gb|AEA55505.1| DNA replication and repair protein recF [Lactobacillus casei BD-II]
          Length = 371

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 168/357 (47%), Gaps = 23/357 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNYA++   F  +  + +G N  GKTN+LE+I  L+  R  R  +  ++
Sbjct: 1   MKLDHLVLKNYRNYAAVDTTFSPEINVLIGANAQGKTNLLESIYVLALARSHRTNNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FARV G       S +LE       +  +I+ +    + +   H  +  
Sbjct: 61  IRFGSE-----FARVSGQVSRQSGSHQLELIISHQGKRARIDRIEQPKLSQYLGHFNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D     + P++   +  ++  ++ RN  L +  +    D 
Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKE----NFPHIKLSLTGFLD 233
            +   +   +A  G ++  AR +++  +S   + I + + K     +F + +  +   L 
Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLETMSDYAATIQQDITKGRESLHFSY-QTQVDPSLR 234

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           G  +Q + AL E +AK+    R+++  +  +L+GP R D++    DK +    GS G+Q+
Sbjct: 235 GDSEQVYTALGEMFAKQ--QAREIEQGT--SLVGPQRDDVLFIVNDKDVA-NFGSQGQQR 289

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              + + LA   L+ + TG  P+LLLD++ + LD  ++  L + +     Q F+T T
Sbjct: 290 TTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAARQTHLLKAI-QTKVQTFLTTT 345


>gi|325280925|ref|YP_004253467.1| DNA replication and repair protein recF [Odoribacter splanchnicus
           DSM 20712]
 gi|324312734|gb|ADY33287.1| DNA replication and repair protein recF [Odoribacter splanchnicus
           DSM 20712]
          Length = 364

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 165/359 (45%), Gaps = 23/359 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K LNI  F+N A   L F +    FVG+NGVGKTN+L+AI  LS  + +         R
Sbjct: 3   LKELNIINFKNIAEATLTFTSGFNCFVGNNGVGKTNVLDAIYHLSMCKSYFNLPDLQNIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              P FF    + E   G  ++++    +  +  +  + N    +  D+L++H+ +  LV
Sbjct: 63  HEEP-FFVVQGKYE--RGGEELTVYCGVKRGQK-KVFKKNQ---KAYDKLSEHIGLIPLV 115

Query: 127 ---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDS 180
              P    +  G S ERR+ +D ++   D  +  R+I + + +  RN LL      + D 
Sbjct: 116 MISPEDFILIDGGSEERRKLVDGIISQCDRVYLHRLIRYNKALTQRNMLLKSAAGKFLDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                   Q+AE G  I   R+  +    S+   Y ++ +    ++ L      K     
Sbjct: 176 EMLEVWNEQLAEHGEAIRQKRIAFLKEFRSVFQTYYERLSLGREEVCLEYKPSVKEGNFL 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            ALK+   +        D +   T +G HR DL+++  D A+    GS G++K  L+ + 
Sbjct: 236 TALKQAADR--------DRLLTYTTVGIHRDDLVLNIGDYAVRKI-GSQGQKKTFLIALK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL 358
           LA    +   +   P+LLLD+I   LD D+   + +IV  ++  Q+F+T T++   D +
Sbjct: 287 LAQYHWLHQMSEVKPLLLLDDIFDKLDADRVEQIVKIVGGEMFGQVFITDTNRGHIDDI 345


>gi|306828609|ref|ZP_07461803.1| recombination protein F [Streptococcus mitis ATCC 6249]
 gi|304429217|gb|EFM32303.1| recombination protein F [Streptococcus mitis ATCC 6249]
          Length = 363

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 167/370 (45%), Gaps = 22/370 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLTIKTFRNYKETKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + GM      SI LE       R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGMLQKKTGSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +    D ++ S 
Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALK 244
           ++ Q+ E G ++   R++ I  L     ++ QK+   H+++S  +  L   +  +     
Sbjct: 178 LDDQLVEYGCRVIKHRIKFIKDLE----KFGQKK---HLEISNQSEELSISYQSTVNFTN 230

Query: 245 EE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           EE     +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 231 EEVLMDSFKMALEKSRSRDLFKKNTGVGPHRDD--IAFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISN 369
           E      I N
Sbjct: 348 ENLSIFNIQN 357


>gi|255530448|ref|YP_003090820.1| DNA replication and repair protein RecF [Pedobacter heparinus DSM
           2366]
 gi|255343432|gb|ACU02758.1| DNA replication and repair protein RecF [Pedobacter heparinus DSM
           2366]
          Length = 367

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 168/380 (44%), Gaps = 38/380 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + +  F+NY    + F      FVGDNG GKTN+L+AI +L   +G+         +
Sbjct: 3   LKNITLLNFKNYTDANVSFSKTVNAFVGDNGAGKTNLLDAIHYLCLCKGYFNPIDTQQIK 62

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G   F     F R E  E    I+  ++    +  +  +      +  D+L  H+ +  
Sbjct: 63  AGQDLFLIQGDFDRQEKNEK---ITCGVKRNQKKQFKRNK------KEYDKLANHIGLFP 113

Query: 125 LV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GY 177
           LV   P    I    S ERRRF+D ++   D  +   +I + R +  RN LL +      
Sbjct: 114 LVMISPYDTNIIMEGSEERRRFMDNVISQTDTNYLDELILYNRHLLNRNALLKQIAVTRS 173

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGK 235
           +D +       Q+   G+KI   R + +     L  +Y Q   E+   + L     L+  
Sbjct: 174 YDPTLLEIYNDQLVASGLKIYAKRQQFMIEFIPLFDKYYQFLTEDQERVSLQYQSQLN-- 231

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            D +F  L ++  +K       D +  RT  G H+ +LI    D A+    GS G+QK  
Sbjct: 232 -DAAFEQLLQQSVEK-------DKVLERTTTGIHKDELIFTISDMALK-KFGSQGQQKSF 282

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTGTDK- 352
           L+ + LA    +    GF P+LLLD+I   LD+ + + L  +V+  D G QIF+T T K 
Sbjct: 283 LIALKLAQYAYLQKYKGFKPLLLLDDIFDKLDDKRMHKLMEMVSHHDFG-QIFITDTGKE 341

Query: 353 ---SVFDSLNETAKFMRISN 369
              +VF+ +        ++N
Sbjct: 342 RVLAVFNKIQVPVTLFEVNN 361


>gi|76787191|ref|YP_330704.1| recombination protein F [Streptococcus agalactiae A909]
 gi|77406514|ref|ZP_00783567.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           H36B]
 gi|77411774|ref|ZP_00788110.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           CJB111]
 gi|97180994|sp|Q3JYE9|RECF_STRA1 RecName: Full=DNA replication and repair protein recF
 gi|76562248|gb|ABA44832.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           A909]
 gi|77162165|gb|EAO73140.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           CJB111]
 gi|77174886|gb|EAO77702.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           H36B]
          Length = 369

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 165/366 (45%), Gaps = 14/366 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +++  +RNY   ++ F     IF+G N  GKTN LEAI FL+  R  R  S  ++  
Sbjct: 3   IKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   T   V    G   + I+L  +     R  ++N +    + +    + +    
Sbjct: 63  FKHHDVQIT-GEVIRKSGHLSLDIQLSEKG----RITKVNHLKQAKLSDYIGAMTVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+FLD  +  I P +   + ++  +++ RN  L T    D ++ S 
Sbjct: 118 PEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+A+ G ++   R + I AL+       Y+      H+ +     ++   D+S  ++
Sbjct: 178 LDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFT-DKS--SI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +  +L      D   + T IGPHR D+     D  I    GS G+Q+ +++ + LA 
Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFGSQGQQRSLILSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   T   PILLLD++ + LD  ++  L   + +   Q F+T T      +L +  K
Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351

Query: 364 FMRISN 369
              +S+
Sbjct: 352 IFNVSD 357


>gi|296875531|ref|ZP_06899603.1| recombination protein F [Streptococcus parasanguinis ATCC 15912]
 gi|296433455|gb|EFH19230.1| recombination protein F [Streptococcus parasanguinis ATCC 15912]
          Length = 364

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 166/367 (45%), Gaps = 13/367 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+I  FRNY  L + F     IF+G N  GKTNILE+I FL+  R  R  +  D+  
Sbjct: 3   LKQLSIQHFRNYQELEVEFHPGLNIFLGQNAQGKTNILESIYFLALTRSHRTRNDRDLIY 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S  F     +V G        + LE       R  ++N +    +     H+ +    
Sbjct: 63  FESTDF-----KVSGQLQRETGPLPLEISLTPKGRITKVNHLKQAKLSNYIGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  + P +   +  +  +++ RN  L      D+++   
Sbjct: 118 PEDLQLIKGSPAGRRKFIDIELGQMKPLYLSDLSQYNHVLKQRNSYLKNSEKIDATFLEV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +++Q+A  G ++   R+E I  L +   E   + +     LS+  +    F +    ++E
Sbjct: 178 LDSQLASFGSRVIYHRLEFIKKLEAKAKEKHTRLSDNKEDLSIQ-YQSTVFSEDGNDIEE 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++   L   R+ D   + T IGPHR DL   +    +    GS G+ + V++ + LA   
Sbjct: 237 QFLSMLEKNRQKDIFRKTTSIGPHRDDLA--FFINNMNATFGSQGQHRSVVLSLKLAEIE 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   T   PILLLD++ + LD  ++  L   +++   Q F+T T     D L E  + +
Sbjct: 295 LMEEITREKPILLLDDVMSELDNYRQLQLLETISN-NIQTFITTT---TLDHLKELPEEL 350

Query: 366 RISNHQA 372
           +I   QA
Sbjct: 351 KIFTIQA 357


>gi|293364503|ref|ZP_06611228.1| recombination protein F [Streptococcus oralis ATCC 35037]
 gi|307702791|ref|ZP_07639741.1| DNA replication and repair protein recF [Streptococcus oralis ATCC
           35037]
 gi|291317011|gb|EFE57439.1| recombination protein F [Streptococcus oralis ATCC 35037]
 gi|307623647|gb|EFO02634.1| DNA replication and repair protein recF [Streptococcus oralis ATCC
           35037]
          Length = 363

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 166/380 (43%), Gaps = 42/380 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +         + G+      SI LE       R  ++N +    + +   H+ +    
Sbjct: 63  FDNEQL-----HLSGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +    D ++ S 
Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIKLSLTG 230
           ++ Q+ E G ++   R++ I               N L  L + Y    NF         
Sbjct: 178 LDDQLVEYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEELSISYQSSVNFTD------- 230

Query: 231 FLDGKFDQSF-CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
             D +   SF  AL++  ++ LF         + T +GPHR D  + +    +  + GS 
Sbjct: 231 --DEQLTNSFKIALEKSRSRDLF--------KKNTGVGPHRDD--IAFYINGMDASFGSQ 278

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+ + +++ I LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T 
Sbjct: 279 GQHRSLVLSIKLAEIELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITT 337

Query: 350 TDKSVFDSLNETAKFMRISN 369
           T      +L E      I N
Sbjct: 338 TSLDHLQNLPENLSIFNIQN 357


>gi|302390801|ref|YP_003826621.1| DNA replication and repair protein RecF [Acetohalobium arabaticum
           DSM 5501]
 gi|302202878|gb|ADL11556.1| DNA replication and repair protein RecF [Acetohalobium arabaticum
           DSM 5501]
          Length = 374

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 165/346 (47%), Gaps = 13/346 (3%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FRNY +L L  +    IF+GDN  GKTNILEAI  LS G   R    +++      S
Sbjct: 8   LKNFRNYHTLELKLNRNLNIFIGDNAEGKTNILEAIYLLSTGDSHRTNITSEMVNWQQDS 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
           F+     +  +    +   K+E       + ++IND  ++ +++L  ++      P    
Sbjct: 68  FY-----ISSLVNRKEQEFKIEFLFKNRKKEVKINDNKLQKLEDLLGYINAIIFSPEDLE 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSSWCSSIEA 188
           +  G   +RR+F++  +  ++  +   + ++ R+++ RN LL    EG            
Sbjct: 123 LVKGSPSKRRKFINLEISQVNSYYYHNLQEYRRIVKQRNNLLKEIREGKSSKDMLVVWNQ 182

Query: 189 QMAELGVKINIARVEMINALSSL--IMEYVQKENFPHIKLSLTGFLDGKFDQSFC-ALKE 245
           Q+ ELG KI   R+  ++ LS L  +M     +    ++LS    LD   + S    ++ 
Sbjct: 183 QLIELGSKIITKRLNALDKLSILARLMHRKITDGLETLELSYQSSLDLNGNNSTTEEIET 242

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            + KKL   ++ +     ++ GPHR D+I +  D   T   GS G+Q+   + + LA   
Sbjct: 243 VFTKKLKANQQKEIDRGVSIFGPHRDDIIFEIND-INTRKFGSQGQQRTAALALKLAELE 301

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + +  G  PILLLD++ + LD +++  L +++ +   Q F+T T+
Sbjct: 302 FMKSEIGEYPILLLDDVFSELDNNRQQYLLKVIEN-RIQTFITSTE 346


>gi|168187274|ref|ZP_02621909.1| DNA replication and repair protein RecF [Clostridium botulinum C
           str. Eklund]
 gi|169294762|gb|EDS76895.1| DNA replication and repair protein RecF [Clostridium botulinum C
           str. Eklund]
          Length = 361

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 178/372 (47%), Gaps = 27/372 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  FRNY  L L   +   +F+GDN  GKTNILE+I + S G+  R     ++ +
Sbjct: 3   IKNLELINFRNYERLSLNLHSGINVFIGDNAQGKTNILESIYYCSIGKSHRTNKDKELIK 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  ++ S +   E ++   DI I  E +     + +++N + ++ + +L     +   
Sbjct: 63  WGARDAYISIYVSKERLDKKIDIKIFKEGK-----KGVRVNSIKLKTISDLIGVFNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   +I       RR+FLD  +  ++ ++   ++ + +++  RN +L +   +      
Sbjct: 118 SPEDLKIIKESPSYRRKFLDIELSKLNKKYYHSLVIYNKVLNERNTILRKWNSNKEVTEV 177

Query: 186 IEAQMAELGVKINIARVEMINALS---SLIMEYV--QKEN--FPHIKLSLTGFLDGKFDQ 238
            + Q+++ G  I   R++ I +LS   + I + +  QKEN  F +I    T   D     
Sbjct: 178 YDYQLSKYGSYIIKERLKYIESLSLRGNKIHKDITSQKENIEFKYI----TSIKD----- 228

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               ++ ++   L    K D     T  GPHR D  V+  +   T  +GS G+Q+  ++ 
Sbjct: 229 -LSNIQNDFYNILRQNIKKDFEKGSTSFGPHRDDFAVN-INATDTRIYGSQGQQRTAVLT 286

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357
           I LA   +I   TG  P+LLLD++ + LD +++  +   + +   Q  +TGT    + + 
Sbjct: 287 IKLASLEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIREF--QTIITGTGLIDIREY 344

Query: 358 LNETAKFMRISN 369
           L++  K  +++N
Sbjct: 345 LDDHVKLFKVTN 356


>gi|257899274|ref|ZP_05678927.1| recombination protein F [Enterococcus faecium Com15]
 gi|293572721|ref|ZP_06683685.1| DNA replication and repair protein RecF [Enterococcus faecium E980]
 gi|257837186|gb|EEV62260.1| recombination protein F [Enterococcus faecium Com15]
 gi|291607213|gb|EFF36571.1| DNA replication and repair protein RecF [Enterococcus faecium E980]
          Length = 374

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 166/360 (46%), Gaps = 29/360 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  --IG---WNDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKL--SLTGF 231
            +   +  Q+A  G K+  AR + I       N+L   I  + ++    ++    SL   
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFIKRLEFWANSLHQQITHHKEQLEIEYLTAVDSLETH 235

Query: 232 LDGKFDQSFCALKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
              +  + F AL  +  KK LF G         T +GPHR DL   + ++     +GS G
Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRG--------TTTVGPHRDDLSF-FINQKNVQTYGSQG 286

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + + LA   LI   TG  PILLLD++ + LD++++  L   + +   Q F+T T
Sbjct: 287 QQRTTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETI-EGKVQTFLTTT 345


>gi|116668572|ref|YP_829505.1| recombination protein F [Arthrobacter sp. FB24]
 gi|166220698|sp|A0JQT5|RECF_ARTS2 RecName: Full=DNA replication and repair protein recF
 gi|116608681|gb|ABK01405.1| DNA replication and repair protein RecF [Arthrobacter sp. FB24]
          Length = 401

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 177/386 (45%), Gaps = 39/386 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++++FR+YA + L  +   T+ VG NG+GKTN++EAI +L+     R +S A + R
Sbjct: 3   LEKLSLTDFRSYAQVDLTLEPGVTVLVGYNGIGKTNLMEAIGYLATLSSHRVSSDAPLLR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+        R + + G     ++LE    R+ R        +R  D L    +     
Sbjct: 63  FGTE---RALIRAKLVRGGQSTVLELEINGSRANRGRINRSNPVRARDILGI-CQTVLFA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSSWC 183
           P    +  G    RRRFLD ++ ++ PRH     D++R+++ RN LL     G F +   
Sbjct: 119 PEDLALVKGDPSNRRRFLDELLVSLMPRHSATRTDYDRVLKQRNALLKSGRSGKFTAGHE 178

Query: 184 SSIEA---QMAELGVKINIARVEMINAL-SSLIMEYVQ-----KENFPHIKLSLTGFLDG 234
           ++++     MA  G ++  AR+E++  +   L   Y Q     KE     + +L G LD 
Sbjct: 179 ATLDVWDQHMARAGAELLYARLELVERIRPHLKAAYAQLTDGSKEADAIYRSTLQGILDD 238

Query: 235 KFDQSFCALKEEYAKKLFDGRKMD------------SMSRR-------TLIGPHRSDLIV 275
               +  A +    +++ D R +             + SRR       +L+GPHR D+ +
Sbjct: 239 DGAGAGYAAEPAAVERVEDLRALSVEELTQRYVQAFAASRRKELERGISLVGPHRDDVEL 298

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLDEDKRN 332
               +A    + S GE   + + + LA   ++   + T G APIL+LD++ A LD  +R 
Sbjct: 299 -ILGEAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGSAPILILDDVFAELDVQRRR 357

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSL 358
            L  IV+     +     D  + D L
Sbjct: 358 KLAAIVSGAEQVLVTAAVDADIPDEL 383


>gi|258506999|ref|YP_003169750.1| DNA replication and repair protein recF [Lactobacillus rhamnosus
           GG]
 gi|257146926|emb|CAR85899.1| DNA replication and repair protein recF [Lactobacillus rhamnosus
           GG]
 gi|259648369|dbj|BAI40531.1| recombination protein RecF [Lactobacillus rhamnosus GG]
          Length = 372

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 166/357 (46%), Gaps = 23/357 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNYA++   F  +  + +G+N  GKTN+LEAI  L+  R  R  +  ++
Sbjct: 1   MKLDHLTLKNYRNYATVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FARV G       + +LE       +  +I+ +    + +   H  +  
Sbjct: 61  IRFGSD-----FARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D     + P++   +  ++  ++ RN  L +  +    D 
Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLD 233
            +   +   +A  G ++  AR +++  +S         I +  +K  F + +  +   L 
Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAY-QTQVAADLR 234

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
              +Q + AL   +AK+    R+++  +  +L+GPHR D++    DK +    GS G+Q+
Sbjct: 235 QDSEQVYEALGALFAKQ--QSREIEQGT--SLVGPHRDDVLFIVNDKDVA-NFGSQGQQR 289

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              + + LA   L+ + TG  P+LLLD++ + LD  ++  L + +     Q F+T T
Sbjct: 290 TTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAIRQTHLLKAI-QAKVQTFLTTT 345


>gi|227541368|ref|ZP_03971417.1| recombination protein F [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182919|gb|EEI63891.1| recombination protein F [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 374

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 161/361 (44%), Gaps = 14/361 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++  L L      T+F G NG GKTNI+E+I +L+     R    A + R
Sbjct: 3   VRHLTLKDFRSWPELDLELGPGVTVFTGANGFGKTNIVESIYYLANLSSHRVKHDAPLVR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  +      G E +  +++K       +    Q+N   +R   EL   +R    
Sbjct: 63  AGADVAQLAATVVSGGRELVVRMTVK-----PHAANLAQLNRTRLRHPRELLGGVRCVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDS-- 180
            P    + +G    RRR +D ++    PR      ++ER+++ RN LL +    ++ S  
Sbjct: 118 SPEDLHLVTGEPEGRRRLIDSVISQETPRFSATKAEYERVLKQRNALLKQAKANFYPSMH 177

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 ++Q+A LG ++  AR  +I  L  L+ E    E  PH +     +L     ++ 
Sbjct: 178 GMLDVWDSQLASLGAELVTARSALITRLHPLV-EAAYLEIAPHSRPPAISYLTRDQAETT 236

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              +      L + R  +  + RTLIGPH+ DL + Y  +A      S GE     + + 
Sbjct: 237 ADTEALLLTSLAEIRPREIDAGRTLIGPHKDDLGL-YLGEAPAKGFASHGETWSFAIALK 295

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           +A  RL S T G  PIL+LD++ A LD  +R AL  ++      +  T     +   L  
Sbjct: 296 IAVFRLFS-TGGHIPILILDDVFAELDNPRRQALTSMIRSAEQVLITTAVPTDIPTDLTH 354

Query: 361 T 361
           T
Sbjct: 355 T 355


>gi|116332685|ref|YP_794212.1| recombination protein F [Lactobacillus brevis ATCC 367]
 gi|122270619|sp|Q03UE1|RECF_LACBA RecName: Full=DNA replication and repair protein recF
 gi|116098032|gb|ABJ63181.1| DNA replication and repair protein RecF [Lactobacillus brevis ATCC
           367]
          Length = 384

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 160/372 (43%), Gaps = 51/372 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FRNY + +L F     + +G+N  GKTN+LEAI  L+  R  R A+  D+  
Sbjct: 3   LQELQLQQFRNYPTAKLTFGQGINVLLGENAQGKTNLLEAIYVLALTRSHRTANDHDLV- 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               ++ +  A+V G    A  ++ LE    R  +  ++N +    + +    L +    
Sbjct: 62  ----NWQAKTAKVSGRVVKAAGAVPLELTFSRQGKRARVNHLEQARLSQYVGQLNVILFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182
           P    I  G    RRRF+D     ++PR+   +  +  L++ RNR L +       D  +
Sbjct: 118 PEDLAIVKGAPTVRRRFMDMEFGQMNPRYLYNLSQYRTLLKQRNRYLKDLQHKQNKDLLF 177

Query: 183 CSSIEAQMAELGVKINIARVEMINAL---------------SSLIMEYV------QKENF 221
            S +  Q+A  G +I   R+ M+  L                 L   Y       Q  + 
Sbjct: 178 LSVLSDQLAAFGAEIIAQRLAMLQKLEHWAQAIHGEISQQREELTFHYATQVADDQLTDV 237

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           P I  +L+     + D           K+L+ G         TL+GPHR DL      K 
Sbjct: 238 PTITAALSALYAKQQD-----------KELYQG--------TTLVGPHRDDLHFQVNGKN 278

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
           +    GS G+Q+   + + LA   L+   TG  P+LLLD++ + LD+ ++  L   + D 
Sbjct: 279 VQ-TFGSQGQQRTTALSVKLAEIDLMKEETGEYPVLLLDDVLSELDDARQTHLLTAIQD- 336

Query: 342 GSQIFMTGTDKS 353
             Q F+T T  S
Sbjct: 337 KVQTFITTTSLS 348


>gi|313894734|ref|ZP_07828295.1| DNA replication and repair protein RecF [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312976643|gb|EFR42097.1| DNA replication and repair protein RecF [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 373

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 166/368 (45%), Gaps = 31/368 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  +RNY  L L FD    IF+G N  GKTNI+EA+ + S GR  R  S A++
Sbjct: 1   MRITRLELHSYRNYEILDLRFDPGVQIFLGANAQGKTNIIEALYYASFGRSHRTTSDAEL 60

Query: 65  TRIGSPS--FFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            R+G  +     +F R  V G     ++S   E    R  R L+  + + +   EL   L
Sbjct: 61  IRMGESAGRIDLSFLRHDVPG-----ELSFTFERGHRR--RILRAGEPLRQ--RELVGLL 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGY 177
            +    P    +  G    RRR+LD  +    P +   ++ +  ++R R  +L    E  
Sbjct: 112 PMVLFSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTHILRQRGAILKDIRERL 171

Query: 178 FDSSWCSSIEAQMAELGVKI---NIARVEMINALSSLIM-------EYVQKENFPHIKLS 227
                    + Q+A    +I    IA  E + ALS  +        E        H+   
Sbjct: 172 VPVDALEPWDVQLARSAARIVTRRIAAAERLGALSGRVQAVLAAGEELTISYEIAHVPDD 231

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           L G  DG  D+    L+  Y K L + R  D     T +GPH  DL++     ++  ++G
Sbjct: 232 LPGEKDGMADR----LEVWYNKALSEFRFRDIARGSTGVGPHLDDLVLSVGGMSLR-SYG 286

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+Q+   + + LA    + ++ G APILLLD++ + LD D+R AL   +     Q F+
Sbjct: 287 SQGQQRTGALALKLAELFYLRDSVGEAPILLLDDVMSELDADRRAALLSFIRSEHIQTFI 346

Query: 348 TGTDKSVF 355
           T TD + F
Sbjct: 347 TATDAAYF 354


>gi|302872926|ref|YP_003841559.1| DNA replication and repair protein RecF [Clostridium cellulovorans
           743B]
 gi|307687879|ref|ZP_07630325.1| recombination protein F [Clostridium cellulovorans 743B]
 gi|302575783|gb|ADL49795.1| DNA replication and repair protein RecF [Clostridium cellulovorans
           743B]
          Length = 364

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 171/368 (46%), Gaps = 28/368 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  FRNY  L +   +   +F GDN  GKTN+LEAI + S G+  R     ++  
Sbjct: 3   IENLKLRNFRNYKELNIDLYSGVNVFTGDNAQGKTNVLEAIYYCSLGKSHRTNKDKELI- 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---------RCLQINDVVIRVVDELN 117
                        + + G  ++++  +TR ++ +         + + IN + ++ + EL 
Sbjct: 62  -----------LWDALSGQLEVTVN-KTRLNKKIKIDILKEGKKAISINSIKLKKISELI 109

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
               +    P   +I       RR+FLD  +  ++ ++   ++ + +++  RN +L    
Sbjct: 110 GICNVVMFSPEDLKIVKDSPSYRRKFLDIELCKLNSKYYFNLVQYNKVLNERNVVLKSNN 169

Query: 178 FDS-SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
            ++       + Q+A+ G  I   RV+ IN L+    E  +       K+S +   D K 
Sbjct: 170 GNNLDIIEVYDMQLAKFGSHIVKDRVDYINKLNRYGQEIHKDITVSKEKISFSYITDAK- 228

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
             +   ++ E    L   R+ D + + T +GPHR D  ++  D   T ++GS G+Q+  +
Sbjct: 229 --NLNGIEVELINLLKKNRQRDFIKKSTTVGPHRDDFSIEIND-IDTRSYGSQGQQRTSI 285

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + I  A  ++I    G  PILLLD++ + LD +++  +   + D+ + I  TG ++ + +
Sbjct: 286 LTIKFASLKIIKELIGEYPILLLDDVLSELDTNRQKYILNSIKDVQTVITCTGMNE-INN 344

Query: 357 SLNETAKF 364
            LN+  K 
Sbjct: 345 YLNDDYKL 352


>gi|168484319|ref|ZP_02709271.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042411|gb|EDT50457.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC1873-00]
 gi|332198850|gb|EGJ12932.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA47368]
          Length = 365

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSVQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239
           ++ Q+ + G ++   R++ I  L S    + +K++F        + +S    ++    Q+
Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISNHQA 372
           E      I N +A
Sbjct: 348 ENLSIFTIQNGKA 360


>gi|168335261|ref|ZP_02693362.1| DNA replication and repair protein RecF [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 359

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 169/375 (45%), Gaps = 27/375 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L+++ FRNY  L L       IF GDN  GKTN+LEAI   +  R  R  S  +V +
Sbjct: 3   ISTLSLTNFRNYQHLSLSLSKGINIFFGDNAQGKTNVLEAIYLCATARSHRTTSEKEVIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S +       +     L+ I   +  R     + + +N + I  + +L   L + +  
Sbjct: 63  WDSENALVNLM-LTKQYSLSTIDFIISKR----YKSVLVNKLPINKLTKLFGVLNVVFFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--FDSSWCS 184
           P    +      +RRRF+D  +  +D  +  ++  + ++++ RN  L +     +  +  
Sbjct: 118 PENLDLIKKSPKDRRRFIDIELCQLDSMYVSQLSSYHKILKQRNCYLKQNVNNINYEFLD 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-----LTGFLDGKFDQS 239
            ++  + +   KI   R E I  L++       K    H++LS     L    +   D +
Sbjct: 178 ILDENLYKYAKKIFYKRSEFIENLNT-------KAAAIHLELSGGKEHLKLIYEPNVDIN 230

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                  +  +L   R  D  ++ T  GPHR D+     D ++ +  GS G+Q+  ++ I
Sbjct: 231 I------FKSRLKFNRDRDIRTKTTNSGPHRDDINFLMNDHSLKL-FGSQGQQRTCILSI 283

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
             A   +I+  TG  PILLLD+I + LD +++  LF+ + ++ + I  TG D ++F + N
Sbjct: 284 KFAQIDIITEITGETPILLLDDILSELDINRQKYLFKYINNLQTMITCTGVDPNLF-TWN 342

Query: 360 ETAKFMRISNHQALC 374
           ++ K   +     +C
Sbjct: 343 DSIKVFIVEKANIIC 357


>gi|152985186|ref|YP_001345399.1| recombination protein F [Pseudomonas aeruginosa PA7]
 gi|166220723|sp|A6UX64|RECF_PSEA7 RecName: Full=DNA replication and repair protein recF
 gi|150960344|gb|ABR82369.1| RecF protein [Pseudomonas aeruginosa PA7]
          Length = 369

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 163/349 (46%), Gaps = 18/349 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  GDNG GKT++LEAI  L   R FR A    V +   
Sbjct: 6   VSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPVIQY-E 64

Query: 70  PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            +  + F +V    G+A ++ I  E + + ++R   I+    R   +L + L +  + P 
Sbjct: 65  EAACTVFGQVMLANGIASNLGISRERQGEFTIR---IDGQNARSAAQLAETLPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           +++    +I+  R   I AL  +  E + +  +   + LS     D   D     L++  
Sbjct: 182 ELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRD-----LQDVL 236

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARL 306
           A  L   ++M      T  GP R+DL +      A  I   S G+QK+V+  + +A   L
Sbjct: 237 ASSLLRDQQMG----HTQAGPQRADLRIRLAGHNAAEIL--SRGQQKLVVCALRIAQGHL 290

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           I+       + L+D++ + LDE  R AL R++ D+G Q+F+T  D  + 
Sbjct: 291 INRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLL 339


>gi|298490844|ref|YP_003721021.1| DNA replication and repair protein RecF ['Nostoc azollae' 0708]
 gi|298232762|gb|ADI63898.1| DNA replication and repair protein RecF ['Nostoc azollae' 0708]
          Length = 371

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 175/369 (47%), Gaps = 36/369 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++ +FRNY   ++ F A  TI VG+N  GK+N LEA+  L+  R  R A   D+ R
Sbjct: 3   LKTLHLRQFRNYQDQKIEFTAPKTILVGNNAQGKSNFLEAVELLATLRSHRLARDHDLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLRISWL 125
            G  +     A +E   G++D+++ L     RSV    IN ++V R +D L     + + 
Sbjct: 63  DGD-AIAQINATLERALGISDLTLTLHRHARRSV---AINSEIVRRQMDFLGVLNAVEF- 117

Query: 126 VPSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FD 179
             S+D  +  G    RR +LD ++  ++P +   +  + +++R RN  L +         
Sbjct: 118 -SSLDLELVRGSPENRRNWLDTLLIQLEPVYAHILQQYNQVLRQRNAFLKKSQESGVRSQ 176

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHIKLSLT 229
            S  S  +AQ+   G ++ I R   I  L+ +            E +Q +  P++ L+  
Sbjct: 177 ESQLSIWDAQLVTAGTRLIIRRDRAIQRLAPIAAGWHASISGSTEVLQIQYAPNVPLAKN 236

Query: 230 GFLDGKFDQSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                +  Q+F   +++  A +L            TL+GPHR ++ +    K     +GS
Sbjct: 237 HA--EEVQQAFLGKIQQRTASELHRS--------TTLVGPHRDEVKLSINQKPAR-QYGS 285

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+Q+ +++ + LA  +LI      +P+LLLD++ A LD  ++N L   + +   Q  +T
Sbjct: 286 QGQQRTLVLALKLAELQLIEEVINESPLLLLDDVLAELDPFRQNQLLDAIQE-RFQTLIT 344

Query: 349 GTDKSVFDS 357
            T    FDS
Sbjct: 345 TTHLGAFDS 353


>gi|225377588|ref|ZP_03754809.1| hypothetical protein ROSEINA2194_03238 [Roseburia inulinivorans DSM
           16841]
 gi|225210564|gb|EEG92918.1| hypothetical protein ROSEINA2194_03238 [Roseburia inulinivorans DSM
           16841]
          Length = 363

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 163/352 (46%), Gaps = 18/352 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + +  FRNY  L + FD    IF GDN  GKTNILEA       +  + +   ++ R
Sbjct: 3   IKSIELQNFRNYEDLNISFDEGTNIFYGDNAQGKTNILEAAYLSGTTKSHKCSKDKEMIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G      +  R   ++   +  I +  + +RS + + IN V I+   EL   L + +  
Sbjct: 63  FGEQ---ESHIRTVVVKKEKEYQIDMHLKHNRS-KGIAINKVPIKKASELFGILNMVFFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    I      ERRRFLD  +  +D  +   +  + +++  RN+LL +  +      ++
Sbjct: 119 PEDLNIIKNGPAERRRFLDSELCQLDKIYLSDLTTYNKILNQRNKLLKDMVYRPDLKDTL 178

Query: 187 ---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+ E G KI   R + ++ L+ ++ +         I   ++G  +    Q   ++
Sbjct: 179 PVWDMQLVETGRKIIRRRKQFVDELNEIVHD---------IHYRISGEKEDLLLQYEPSI 229

Query: 244 KEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++  +  +L   ++ D     T +GPHR DL+    +  I    GS G+Q+   + + L+
Sbjct: 230 EDIFFEDELSRVKERDMRQCMTSVGPHRDDLLFSIGEVDIR-KFGSQGQQRTSALSLKLS 288

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
              L+  +    P+LLLD++ + LD +++N L   + D  + I  TG D+ V
Sbjct: 289 EIELVKRSIHDTPVLLLDDVLSELDSNRQNYLLNSIHDTQTLITCTGLDEFV 340


>gi|49086132|gb|AAT51330.1| PA0003 [synthetic construct]
          Length = 370

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 162/349 (46%), Gaps = 18/349 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  GDNG GKT++LEAI  L   R FR A    V +   
Sbjct: 6   VSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPVVQY-E 64

Query: 70  PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            +  + F +V    G+A ++ I  E + + ++R   I+    R   +L + L +  + P 
Sbjct: 65  EAACTVFGQVMLANGIASNLGISRERQGEFTIR---IDGQNARSAAQLAETLPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           +++    +I+  R   I AL  +  E + +  +   + LS     D   D     L E  
Sbjct: 182 ELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRD-----LLEVL 236

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARL 306
           A  L   ++M      T  GP R+DL +      A  I   S G+QK+V+  + +A   L
Sbjct: 237 ASSLLRDQQMG----HTQAGPQRADLRIRLAGHNAAEIL--SRGQQKLVVCALRIAQGHL 290

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           I+       + L+D++ + LDE  R AL R++ D+G Q+F+T  D  + 
Sbjct: 291 INRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLL 339


>gi|257885590|ref|ZP_05665243.1| recombination protein F [Enterococcus faecium 1,231,501]
 gi|257821446|gb|EEV48576.1| recombination protein F [Enterococcus faecium 1,231,501]
          Length = 374

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 166/357 (46%), Gaps = 23/357 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  --IG---WTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLD 233
            +   +  Q+A  G K+  AR + +       N+L   I    QKE    +++     +D
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITH--QKE---QLEIEYLTAVD 230

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                +   ++E++   L   +K D     T +GPHR DL   + ++     +GS G+Q+
Sbjct: 231 SLETHTQEQIQEQFLALLNQNKKKDFFRGTTTVGPHRDDLSF-FINQKNVQTYGSQGQQR 289

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              + + LA   LI   TG  PILLLD++ + LD++++  L   + +   Q F+T T
Sbjct: 290 TTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETI-EGKVQTFLTTT 345


>gi|78173107|gb|ABB29470.1| RecF [Streptomyces argillaceus]
          Length = 373

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 162/361 (44%), Gaps = 27/361 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    ++ R        +R  D L   +R   
Sbjct: 61  VRMGA---DRAVVRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D+ER++R RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLRQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP---HIKLSLT 229
              D S     +  +A +G ++  AR++++ A+  L     E +     P     K S  
Sbjct: 177 RTMDLSTLDVWDQHLARVGAELLAARLDLVAAVQPLADKAYEQLAPGGGPVALEYKASAP 236

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           G    + D     L E+    L + RK +     TL GPHR D+++    +     + S 
Sbjct: 237 GEAHARED-----LYEQLMGALAEVRKQEIERGVTLAGPHRDDVLLK-LGQLPAKGYASH 290

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T 
Sbjct: 291 GESWSYALALRLASYDLL-RAEGNEPVLILDDVFAELDSRRRERLAELVAP-GEQVLVTA 348

Query: 350 T 350
            
Sbjct: 349 A 349


>gi|69246709|ref|ZP_00604077.1| RecF protein [Enterococcus faecium DO]
 gi|257881315|ref|ZP_05660968.1| recombination protein F [Enterococcus faecium 1,231,502]
 gi|257890532|ref|ZP_05670185.1| recombination protein F [Enterococcus faecium 1,231,410]
 gi|257893107|ref|ZP_05672760.1| recombination protein F [Enterococcus faecium 1,231,408]
 gi|258615267|ref|ZP_05713037.1| recombination protein F [Enterococcus faecium DO]
 gi|260558230|ref|ZP_05830426.1| RecF protein [Enterococcus faecium C68]
 gi|261206920|ref|ZP_05921609.1| RecF protein [Enterococcus faecium TC 6]
 gi|289566503|ref|ZP_06446927.1| DNA replication and repair protein recF [Enterococcus faecium
           D344SRF]
 gi|293563254|ref|ZP_06677706.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1162]
 gi|293569156|ref|ZP_06680462.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1071]
 gi|294616656|ref|ZP_06696427.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1636]
 gi|294623762|ref|ZP_06702590.1| DNA replication and repair protein RecF [Enterococcus faecium
           U0317]
 gi|314940128|ref|ZP_07847308.1| recombination protein F [Enterococcus faecium TX0133a04]
 gi|314943041|ref|ZP_07849845.1| recombination protein F [Enterococcus faecium TX0133C]
 gi|314948159|ref|ZP_07851555.1| recombination protein F [Enterococcus faecium TX0082]
 gi|314953427|ref|ZP_07856345.1| recombination protein F [Enterococcus faecium TX0133A]
 gi|314993834|ref|ZP_07859170.1| recombination protein F [Enterococcus faecium TX0133B]
 gi|314998141|ref|ZP_07863023.1| recombination protein F [Enterococcus faecium TX0133a01]
 gi|68195123|gb|EAN09582.1| RecF protein [Enterococcus faecium DO]
 gi|257816973|gb|EEV44301.1| recombination protein F [Enterococcus faecium 1,231,502]
 gi|257826892|gb|EEV53518.1| recombination protein F [Enterococcus faecium 1,231,410]
 gi|257829486|gb|EEV56093.1| recombination protein F [Enterococcus faecium 1,231,408]
 gi|260075404|gb|EEW63710.1| RecF protein [Enterococcus faecium C68]
 gi|260078548|gb|EEW66250.1| RecF protein [Enterococcus faecium TC 6]
 gi|289161712|gb|EFD09588.1| DNA replication and repair protein recF [Enterococcus faecium
           D344SRF]
 gi|291588125|gb|EFF19967.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1071]
 gi|291590476|gb|EFF22214.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1636]
 gi|291596716|gb|EFF27939.1| DNA replication and repair protein RecF [Enterococcus faecium
           U0317]
 gi|291604793|gb|EFF34275.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1162]
 gi|313587853|gb|EFR66698.1| recombination protein F [Enterococcus faecium TX0133a01]
 gi|313591725|gb|EFR70570.1| recombination protein F [Enterococcus faecium TX0133B]
 gi|313594530|gb|EFR73375.1| recombination protein F [Enterococcus faecium TX0133A]
 gi|313598241|gb|EFR77086.1| recombination protein F [Enterococcus faecium TX0133C]
 gi|313640633|gb|EFS05213.1| recombination protein F [Enterococcus faecium TX0133a04]
 gi|313645413|gb|EFS09993.1| recombination protein F [Enterococcus faecium TX0082]
          Length = 374

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 166/357 (46%), Gaps = 23/357 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  --IG---WTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLD 233
            +   +  Q+A  G K+  AR + +       N+L   I    QKE    +++     +D
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITH--QKE---QLEIEYLTAVD 230

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                +   ++E++   L   +K D     T +GPHR DL   + ++     +GS G+Q+
Sbjct: 231 SLETHTQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSF-FINQKNVQTYGSQGQQR 289

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              + + LA   LI   TG  PILLLD++ + LD++++  L   + +   Q F+T T
Sbjct: 290 TTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETI-EGKVQTFLTTT 345


>gi|304437929|ref|ZP_07397875.1| recombination protein F [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369069|gb|EFM22748.1| recombination protein F [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 372

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 165/370 (44%), Gaps = 32/370 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  +R+Y +L L FD    IF+G N  GKTNI+EA+ + + GR  R +S A++
Sbjct: 1   MQITELTLRSYRSYETLHLAFDPGVQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR--- 121
            R G+                A I +     D              R +    + LR   
Sbjct: 61  IRAGADG--------------AHIGLSFRRHDVPGELSFTFARGARRRITYAGESLRQRD 106

Query: 122 ISWLVP----SMDRIF--SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT- 174
           +  L+P    S + +F   G    RRR+LD  +    P +   ++ + R+++ RN +L  
Sbjct: 107 LVGLLPMVLFSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTRILKQRNAVLKD 166

Query: 175 --EGYFDSSWCSSIEAQMAELGVKI---NIARVEMINALSSLIMEYVQ--KENFPHIKLS 227
             E           +AQ+A     I    IA V  + ALS+ +   +   +E     +++
Sbjct: 167 IRERLAAPDDLPPWDAQLARSAAYIVTRRIAAVAQLGALSARVQAVLAAGEELTLAYEIA 226

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
             G  D   D    +L   Y K L +GR  D     T +GPH  DL++     ++  ++G
Sbjct: 227 GAGAEDFAEDDMTESLHLWYNKMLCEGRARDIARAATGVGPHLDDLVLRVGGMSLR-SYG 285

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+Q+   + + LA    +    G APILLLD++ + LD D+R AL   +     Q F+
Sbjct: 286 SQGQQRTGALALKLAELFYLQENIGEAPILLLDDVMSELDADRRRALLDFIRHEHIQTFI 345

Query: 348 TGTDKSVFDS 357
           T TD + F +
Sbjct: 346 TATDAAYFPA 355


>gi|239630808|ref|ZP_04673839.1| DNA replication and repair protein recF [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239527091|gb|EEQ66092.1| DNA replication and repair protein recF [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 371

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 168/357 (47%), Gaps = 23/357 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNYA++   F  +  + +G N  GKTN+LE+I  L+  R  R  +  ++
Sbjct: 1   MKLDHLVLKNYRNYAAVDTTFSPEINVLIGANAQGKTNLLESIYVLALARSHRTNNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FARV G       S +LE       +  +I+ +    + +   H  +  
Sbjct: 61  IRFGSE-----FARVSGQVSRQSGSHQLELIISHQGKRARIDRIEQPKLSQYLGHFNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D     + P++   +  ++  ++ RN  L +  +    D 
Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKE----NFPHIKLSLTGFLD 233
            +   +   +A  G ++  AR +++  +S   + I + + K     +F + +  +   L 
Sbjct: 176 VYLDVLTDSLAVFGAELITARAKLLETMSDYAATIQQDITKGRESLHFSY-QTQVDPSLR 234

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           G  +Q + AL E +AK+    R+++  +  +L+GP R D++    DK +    GS G+Q+
Sbjct: 235 GDSEQVYTALGEMFAKQ--QAREIEQGT--SLVGPQRDDVLFIVNDKDVA-NFGSQGQQR 289

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              + + LA   L+ + TG  P+LLLD++ + LD  ++  L + +     Q F+T T
Sbjct: 290 TTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAARQTHLLKAI-QTKVQTFLTTT 345


>gi|283797182|ref|ZP_06346335.1| RecF protein [Clostridium sp. M62/1]
 gi|291075140|gb|EFE12504.1| RecF protein [Clostridium sp. M62/1]
 gi|295090281|emb|CBK76388.1| DNA replication and repair protein RecF [Clostridium cf.
           saccharolyticum K10]
 gi|295115476|emb|CBL36323.1| DNA replication and repair protein RecF [butyrate-producing
           bacterium SM4/1]
          Length = 368

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 158/361 (43%), Gaps = 28/361 (7%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N + ++ + +  +RNY SL +VFD    +  GDN  GKTN+LEA+   +  +  R +   
Sbjct: 6   NNMFVESIELKNYRNYGSLSMVFDPGTNVLYGDNAQGKTNVLEAVYVCATTKSHRGSKDK 65

Query: 63  DVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           ++ R     S      R + +    D+ +K         + + IN V IR   EL   + 
Sbjct: 66  EIIRFAEDESHIKMNIRKDNVPYRIDMHLK-----KNKTKGIAINGVPIRRASELFGIVN 120

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           + +  P    I      ERRRF+D  +  ++  +   ++ + R +  RN+LL E  F   
Sbjct: 121 VVFFSPEDLNIIKNGPAERRRFVDLELCQLNRLYVHALVQYNRTLTQRNKLLKELPFKPE 180

Query: 182 WCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
              ++   + Q+   G ++   R E    L+ +I +         I   L+G   G+ + 
Sbjct: 181 LLETLDIWDMQLVSFGRELIRYRREFAGELNEMIRD---------IHRQLSG---GREEL 228

Query: 239 SFC----ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQK 293
             C      +E +   L  GR+ D   + TL GPHR DL   +    + I   GS G+Q+
Sbjct: 229 VICYEPNTEEEAFETALKRGREADIRQKTTLSGPHRDDL--SFSVNGVDIRRFGSQGQQR 286

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
              + + LA   L+       P+LLLD++ + LD  ++  L   +  I + I  TG D  
Sbjct: 287 TAALSLKLAEIELVKKIVKDYPVLLLDDVLSELDSGRQQHLLSGIRHIQTIITCTGLDDF 346

Query: 354 V 354
           V
Sbjct: 347 V 347


>gi|319399911|gb|EFV88157.1| DNA replication and repair protein recF [Staphylococcus epidermidis
           FRI909]
          Length = 371

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 169/384 (44%), Gaps = 29/384 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F S +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNSDYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q AE  +K+ + R   I  L +L            E +  +  P +KLS   
Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELETLAQPIHAGITNHRETLTLDYVPSLKLS--- 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                ++ +   L EE    L D  + +      L GPHR DL  +  +      +GS G
Sbjct: 233 ----NYEANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFN-VNGMDAQTYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346

Query: 351 DKSVFD-SLNETAKFMRISNHQAL 373
                D  +   AK  RIS  + L
Sbjct: 347 SVEGIDHEIMNNAKLYRISQGELL 370


>gi|242243252|ref|ZP_04797697.1| recombination protein F [Staphylococcus epidermidis W23144]
 gi|242233201|gb|EES35513.1| recombination protein F [Staphylococcus epidermidis W23144]
          Length = 371

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 169/384 (44%), Gaps = 29/384 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F S +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNSDYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q AE  +K+ + R   I  L +L            E +  +  P +KLS   
Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELETLAQPIHAGITNHRETLTLDYVPSLKLS--- 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                ++ +   L EE    L D  + +      L GPHR DL  +  +      +GS G
Sbjct: 233 ----NYEANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFN-VNGMDAQTYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346

Query: 351 DKSVFD-SLNETAKFMRISNHQAL 373
                D  +   AK  RIS  + L
Sbjct: 347 SVEGIDHEIMNNAKLYRISQGEIL 370


>gi|320547699|ref|ZP_08041984.1| recombination protein F [Streptococcus equinus ATCC 9812]
 gi|320447774|gb|EFW88532.1| recombination protein F [Streptococcus equinus ATCC 9812]
          Length = 364

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 167/366 (45%), Gaps = 20/366 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  +RNY +  L F     +F+G N  GKTN LEAI FLS  R  R       TR
Sbjct: 3   IQKIALKNYRNYLNNELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHR-------TR 55

Query: 67  IGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           +      F      V G    +  ++ LE       R  +IN +    + +    + +  
Sbjct: 56  LDKELIHFQEKELHVSGNLQRSTGAVPLEIDLSSKGRVTKINHLKQAKLSDYIGVMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L T    D  + 
Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNTYLKTAEKVDIDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALS--SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           + ++ Q+A+ G ++   R++ I  L   +    Y   +   H+K+     +   FD+   
Sbjct: 176 AVLDEQLADFGSRVMEHRLDFIANLEKEADCYHYTISDGLEHLKIHYLSSV--PFDKK-S 232

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +KE++ K L    K D   + T  GPHR DL  ++    +    GS G+ + +++ + +
Sbjct: 233 DIKEQFLKTLERNHKRDIFKKNTGAGPHRDDL--EFFINDMPANFGSQGQHRSLILSLKM 290

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           A   LI N TG  PILLLD++ + LD  ++  L +++     Q F+T T     + L++ 
Sbjct: 291 AEIELIKNVTGDYPILLLDDVMSELDNYRQTELLKMIIAKNVQTFITTTS---LEHLSQL 347

Query: 362 AKFMRI 367
            K ++I
Sbjct: 348 PKELKI 353


>gi|303254888|ref|ZP_07340973.1| recombination protein F [Streptococcus pneumoniae BS455]
 gi|303259715|ref|ZP_07345691.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           SP-BS293]
 gi|303262182|ref|ZP_07348127.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264617|ref|ZP_07350536.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           BS397]
 gi|303266074|ref|ZP_07351968.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           BS457]
 gi|303268482|ref|ZP_07354276.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           BS458]
 gi|301802888|emb|CBW35669.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           INV200]
 gi|302598159|gb|EFL65220.1| recombination protein F [Streptococcus pneumoniae BS455]
 gi|302636822|gb|EFL67312.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639267|gb|EFL69726.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           SP-BS293]
 gi|302641983|gb|EFL72336.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           BS458]
 gi|302644378|gb|EFL74631.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           BS457]
 gi|302645987|gb|EFL76215.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           BS397]
          Length = 365

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTQTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239
           ++ Q+ + G ++   R++ I  L S    + +K++F        + +S    ++    Q+
Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISNHQA 372
           E      I + +A
Sbjct: 348 ENLSIFTIQDGKA 360


>gi|194398177|ref|YP_002038823.1| recombination protein F [Streptococcus pneumoniae G54]
 gi|226737841|sp|B5E455|RECF_STRP4 RecName: Full=DNA replication and repair protein recF
 gi|194357844|gb|ACF56292.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           G54]
          Length = 365

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 172/373 (46%), Gaps = 22/373 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L ++   D ++ S 
Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSDQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239
           ++ Q+ + G ++   R++ I  L S    + +K++F        + +S    ++    Q+
Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISNHQA 372
           E      I + +A
Sbjct: 348 ENLSIFTIQDGKA 360


>gi|57865928|ref|YP_190091.1| recombination protein F [Staphylococcus epidermidis RP62A]
 gi|251811367|ref|ZP_04825840.1| recombination protein F [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874724|ref|ZP_06283603.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           SK135]
 gi|293367577|ref|ZP_06614230.1| recombination protein F [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|73914002|sp|Q5HK02|RECF_STAEQ RecName: Full=DNA replication and repair protein recF
 gi|57636586|gb|AAW53374.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           RP62A]
 gi|251805116|gb|EES57773.1| recombination protein F [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296440|gb|EFA88955.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           SK135]
 gi|291318290|gb|EFE58683.1| recombination protein F [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329724141|gb|EGG60659.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           VCU144]
 gi|329735750|gb|EGG72031.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           VCU028]
 gi|329736171|gb|EGG72444.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           VCU045]
          Length = 371

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 169/384 (44%), Gaps = 29/384 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F S +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FKSDYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q AE  +K+ + R   I  L +L            E +  +  P +KLS   
Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELETLAQPIHAGITNDRETLTLDYVPSLKLS--- 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                ++ +   L EE    L D  + +      L GPHR DL  +  +      +GS G
Sbjct: 233 ----NYEANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFN-VNGMDAQTYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346

Query: 351 DKSVFD-SLNETAKFMRISNHQAL 373
                D  +   AK  RIS  + L
Sbjct: 347 SVEGIDHEIMNNAKLYRISQGEIL 370


>gi|221232925|ref|YP_002512079.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           ATCC 700669]
 gi|225855720|ref|YP_002737232.1| recombination protein F [Streptococcus pneumoniae JJA]
 gi|225859998|ref|YP_002741508.1| recombination protein F [Streptococcus pneumoniae 70585]
 gi|254790490|sp|C1CBK4|RECF_STRP7 RecName: Full=DNA replication and repair protein recF
 gi|254790491|sp|B8ZQB8|RECF_STRPJ RecName: Full=DNA replication and repair protein recF
 gi|254790493|sp|C1CHM6|RECF_STRZJ RecName: Full=DNA replication and repair protein recF
 gi|220675387|emb|CAR69989.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           ATCC 700669]
 gi|225719969|gb|ACO15823.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           70585]
 gi|225724158|gb|ACO20011.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           JJA]
          Length = 365

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 172/373 (46%), Gaps = 22/373 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L ++   D ++ S 
Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSDQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239
           ++ Q+ + G ++   R++ I  L S    + +K++F        + +S    ++    Q+
Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISNHQA 372
           E      I + +A
Sbjct: 348 ENLSIFTIQDGKA 360


>gi|15595201|ref|NP_064723.1| recombination protein F [Pseudomonas aeruginosa PAO1]
 gi|116053723|ref|YP_788158.1| recombination protein F [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254243117|ref|ZP_04936439.1| RecF protein [Pseudomonas aeruginosa 2192]
 gi|296386475|ref|ZP_06875974.1| recombination protein F [Pseudomonas aeruginosa PAb1]
 gi|313111475|ref|ZP_07797276.1| DNA replication and repair protein RecF [Pseudomonas aeruginosa
           39016]
 gi|13959479|sp|Q9I7C3|RECF_PSEAE RecName: Full=DNA replication and repair protein recF
 gi|122262142|sp|Q02V78|RECF_PSEAB RecName: Full=DNA replication and repair protein recF
 gi|9945821|gb|AAG03393.1|AE004440_3 RecF protein [Pseudomonas aeruginosa PAO1]
 gi|115588944|gb|ABJ14959.1| DNA replication and repair protein RecF [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126196495|gb|EAZ60558.1| RecF protein [Pseudomonas aeruginosa 2192]
 gi|310883778|gb|EFQ42372.1| DNA replication and repair protein RecF [Pseudomonas aeruginosa
           39016]
          Length = 369

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 162/349 (46%), Gaps = 18/349 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  GDNG GKT++LEAI  L   R FR A    V +   
Sbjct: 6   VSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPVIQY-E 64

Query: 70  PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            +  + F +V    G+A ++ I  E + + ++R   I+    R   +L + L +  + P 
Sbjct: 65  EAACTVFGQVMLANGIASNLGISRERQGEFTIR---IDGQNARSAAQLAETLPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           +++    +I+  R   I AL  +  E + +  +   + LS     D   D     L E  
Sbjct: 182 ELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRD-----LLEVL 236

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARL 306
           A  L   ++M      T  GP R+DL +      A  I   S G+QK+V+  + +A   L
Sbjct: 237 ASSLLRDQQMG----HTQAGPQRADLRIRLAGHNAAEIL--SRGQQKLVVCALRIAQGHL 290

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           I+       + L+D++ + LDE  R AL R++ D+G Q+F+T  D  + 
Sbjct: 291 INRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLL 339


>gi|297582342|ref|YP_003698122.1| DNA replication and repair protein RecF [Bacillus selenitireducens
           MLS10]
 gi|297140799|gb|ADH97556.1| DNA replication and repair protein RecF [Bacillus selenitireducens
           MLS10]
          Length = 373

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 166/356 (46%), Gaps = 20/356 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L ++++RNY  L L F+ +  +F+G+N  GKTN++EAI  L+  R  R A   ++
Sbjct: 1   MHINELKLTDYRNYTKLHLTFENRVNVFLGENAQGKTNVMEAIYVLAMARSHRTAKDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P     FARVEG     + ++KLE       + +++N +  + + +      I  
Sbjct: 61  IRWDQP-----FARVEGAVTNRNGAMKLEMIFSGRGKKVKLNALERKRLSDYIGACTIVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GYFD 179
             P    +  G    RRRFLD  +  I   +   +  + +L++ RN  L +       FD
Sbjct: 116 FAPEDLALVKGSPQIRRRFLDMEMGQIFTIYLYYLSQYYKLLKQRNTWLKQLQQKSSSFD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMIN---ALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                 +  Q+ E G ++   R   +N   A ++ I   + ++    + L     +    
Sbjct: 176 EGMWHVLTEQLVEAGAEVIQRRFSFLNKLEAWATPIHSAISRDK-ETLTLHYESTVKADD 234

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           + S   +K+ + ++    + M+   RR  T+IGPHR D+     D+ +   +GS G+Q+ 
Sbjct: 235 EMSVDVIKQVFFEQF--QQVMEQEIRRGTTIIGPHRDDVAFFVNDRNVQ-TYGSQGQQRT 291

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
             + + LA   LI   TG  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 292 AALSVKLAEIELIHEKTGEYPILLLDDVLSELDDHRQTHLLNSIQG-KVQTFVTTT 346


>gi|107098997|ref|ZP_01362915.1| hypothetical protein PaerPA_01000003 [Pseudomonas aeruginosa PACS2]
 gi|218888749|ref|YP_002437613.1| recombination protein F [Pseudomonas aeruginosa LESB58]
 gi|254237754|ref|ZP_04931077.1| RecF protein [Pseudomonas aeruginosa C3719]
 gi|226737820|sp|B7V0N8|RECF_PSEA8 RecName: Full=DNA replication and repair protein recF
 gi|126169685|gb|EAZ55196.1| RecF protein [Pseudomonas aeruginosa C3719]
 gi|218768972|emb|CAW24730.1| RecF protein [Pseudomonas aeruginosa LESB58]
          Length = 369

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 162/349 (46%), Gaps = 18/349 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  GDNG GKT++LEAI  L   R FR A    V +   
Sbjct: 6   VSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPVIQY-E 64

Query: 70  PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            +  + F +V    G+A ++ I  E + + ++R   I+    R   +L + L +  + P 
Sbjct: 65  EAACTVFGQVMLANGIASNLGISRERQGEFTIR---IDGQNARSAAQLAETLPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           +++    +I+  R   I AL  +  E + +  +   + LS     D   D     L E  
Sbjct: 182 ELSLASDEIDAYRRSYIQALKPVFEETLAELVSLDDLTLSYYRGWDKDRD-----LLEVL 236

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARL 306
           A  L   ++M      T  GP R+DL +      A  I   S G+QK+V+  + +A   L
Sbjct: 237 ASSLLRDQQMG----HTQAGPQRADLRIRLSGHNAAEIL--SRGQQKLVVCALRIAQGHL 290

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           I+       + L+D++ + LDE  R AL R++ D+G Q+F+T  D  + 
Sbjct: 291 INRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLL 339


>gi|226309591|ref|YP_002769485.1| DNA replication and repair protein F [Brevibacillus brevis NBRC
           100599]
 gi|254790466|sp|C0ZH40|RECF_BREBN RecName: Full=DNA replication and repair protein recF
 gi|226092539|dbj|BAH40981.1| DNA replication and repair protein F [Brevibacillus brevis NBRC
           100599]
          Length = 372

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 174/381 (45%), Gaps = 45/381 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+++ +RNY ++ L FD    +F+G+N  GKTN LE+I  L+  +  R     D   
Sbjct: 3   LKNLSLTNYRNYETMSLSFDGPIQLFIGNNAQGKTNALESIYVLALAKSHRTPR--DKEL 60

Query: 67  IGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           I   + ++T  + V    G   + ++L T+  R+    +IN +  + +      L +   
Sbjct: 61  ISWDADYATIRSDVLRRYGSVRLELQLTTKGKRA----KINGMEQQKLSAYVGALNVVMF 116

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I  G   +RRRF+D  +  + P +   + ++ +++  RN+LL +     S  +S
Sbjct: 117 APEDLSIVKGAPAQRRRFIDMEIGQVSPTYLYYLSNYNKVLAQRNQLLKDLAMKKS--NS 174

Query: 186 IE------AQMAELGVKINIARVEMINALSS---------------LIMEYVQKENFPHI 224
           +E       Q+A+L VK+   R E I  L +               L + YV   N   +
Sbjct: 175 LEMLAIWNTQLADLAVKLLRKRFEFIRKLETWAQEIHTGITDGRERLSLHYV---NSSPV 231

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
              +T  +D   D+   A +E   +++  G         TLIGPHR D  +   +  +  
Sbjct: 232 TEEMT--IDQAVDKMLAAYEEVRDREIMRG--------STLIGPHRDDFSLKVNNMDVQ- 280

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGS 343
            +GS G+Q+   + I LA   LI    G  P+LLLD++ + LDE ++  L   + D + +
Sbjct: 281 TYGSQGQQRTSALSIKLAEIELIKEEVGEYPVLLLDDVLSELDEHRQTLLLETIQDRVQT 340

Query: 344 QIFMTGTDKSVFDSLNETAKF 364
            +  TG +      L + ++F
Sbjct: 341 FVSTTGVEGLKHQVLQQASRF 361


>gi|182685163|ref|YP_001836910.1| recombination protein F [Streptococcus pneumoniae CGSP14]
 gi|226737843|sp|B2INP4|RECF_STRPS RecName: Full=DNA replication and repair protein recF
 gi|182630497|gb|ACB91445.1| recombination protein F [Streptococcus pneumoniae CGSP14]
          Length = 365

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTQTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239
           ++ Q+ + G ++   R++ I  L S    + +K++F        + +S    ++    Q+
Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQPSVNITDKQN 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISNHQA 372
           E      I + +A
Sbjct: 348 ENLSIFTIQDGKA 360


>gi|322375204|ref|ZP_08049718.1| DNA replication and repair protein RecF [Streptococcus sp. C300]
 gi|321280704|gb|EFX57743.1| DNA replication and repair protein RecF [Streptococcus sp. C300]
          Length = 365

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 166/370 (44%), Gaps = 22/370 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +         + G+      SI LE       R  ++N +    + +   H+ +    
Sbjct: 63  FDNEQL-----HLSGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +    D ++ S 
Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALK 244
           ++ Q+ E G ++   R++ I  L     ++ QK+   H+++S     L   +  S     
Sbjct: 178 LDDQLIEYGCRVIKHRIKFIKDLE----KFGQKK---HLEISNKLEELSISYQSSVNFTN 230

Query: 245 EEYAKKLF-----DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           EE     F       R  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 231 EEQLTSSFKIALDKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISN 369
           E      I N
Sbjct: 348 ENLSIFNIQN 357


>gi|15904073|ref|NP_359623.1| recombination protein F [Streptococcus pneumoniae R6]
 gi|116516540|ref|YP_817437.1| recombination protein F [Streptococcus pneumoniae D39]
 gi|225857795|ref|YP_002739306.1| recombination protein F [Streptococcus pneumoniae P1031]
 gi|225862043|ref|YP_002743552.1| recombination protein F [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229429|ref|ZP_06963110.1| recombination protein F [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255953|ref|ZP_06979539.1| recombination protein F [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501743|ref|YP_003723683.1| recombination protein F [Streptococcus pneumoniae TCH8431/19A]
 gi|51316461|sp|Q8DMX3|RECF_STRR6 RecName: Full=DNA replication and repair protein recF
 gi|122277717|sp|Q04HV1|RECF_STRP2 RecName: Full=DNA replication and repair protein recF
 gi|254790494|sp|C1CNK0|RECF_STRZP RecName: Full=DNA replication and repair protein recF
 gi|254790495|sp|C1CUE4|RECF_STRZT RecName: Full=DNA replication and repair protein recF
 gi|15459739|gb|AAL00834.1| Recombination protein RecF [Streptococcus pneumoniae R6]
 gi|116077116|gb|ABJ54836.1| recF protein [Streptococcus pneumoniae D39]
 gi|225725404|gb|ACO21256.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           P1031]
 gi|225727340|gb|ACO23191.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237338|gb|ADI68469.1| recombination protein F [Streptococcus pneumoniae TCH8431/19A]
 gi|327388971|gb|EGE87319.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA04375]
          Length = 365

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239
           ++ Q+ + G ++   R++ I  L S    + +K++F        + +S    ++    Q+
Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISNHQA 372
           E      I + +A
Sbjct: 348 ENLSIFTIQDGKA 360


>gi|225181145|ref|ZP_03734591.1| DNA replication and repair protein RecF [Dethiobacter alkaliphilus
           AHT 1]
 gi|225168114|gb|EEG76919.1| DNA replication and repair protein RecF [Dethiobacter alkaliphilus
           AHT 1]
          Length = 369

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 172/373 (46%), Gaps = 20/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + +  +RNY+SL L  +    +  G N  GKTN+LE+++F++ GR FR  +  ++
Sbjct: 1   MRLETIELRNYRNYSSLSLELNPNINLLFGSNAQGKTNLLESVAFIAAGRSFRTRNEGEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +  ++ ARV    G   + +  +      +    +N + +   +   + + +  
Sbjct: 61  ILWGENNCTAS-ARVCNRMGRETLKVSFDAGSRNKI--FSVNGLTMNRSNYAGRLVTV-L 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSS 181
             P    I  G    RR+F D  +  I P +   +   ++++R RN LL    +    S 
Sbjct: 117 FTPEDLSIVKGSPAVRRKFFDDEISKISPVYEYELGRLQQIIRQRNNLLKKFRQKVLGSQ 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----PHIKLSLTGFL---DG 234
             +S   Q+A L  KI I RV  I  +   ++  +   N       +++    FL   DG
Sbjct: 177 ELASWNEQLAILSAKILIKRVTAIRRIG--LLARLSHRNLTGRDESLEILYQSFLPLDDG 234

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
             D     +++     L + +  ++   +TL+GPHR D++ +   +   + + S G+Q+ 
Sbjct: 235 ILDAQ--VIQDALLAGLEEKKHEEARLGQTLLGPHRDDIVFNINGRNARL-YASQGQQRT 291

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           +++ + LA    I   TG  P+LL D++ + LDE +R  L   + D   Q F+TGT+   
Sbjct: 292 LVLALKLAELEFIKGETGEYPVLLFDDVFSELDERRRRLLVETI-DGRIQTFITGTEAEK 350

Query: 355 FDSLNETAKFMRI 367
                E+ K  ++
Sbjct: 351 LRQFKESGKMFKV 363


>gi|323487684|ref|ZP_08092942.1| hypothetical protein GPDM_00015 [Planococcus donghaensis MPA1U2]
 gi|323398418|gb|EGA91206.1| hypothetical protein GPDM_00015 [Planococcus donghaensis MPA1U2]
          Length = 370

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 169/363 (46%), Gaps = 35/363 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  +RNY SL L F  +  +F+G+N  GKTN++E++  LS  +  R ++  ++
Sbjct: 1   MRIDRLELVNYRNYESLELEFSPEINVFIGENAQGKTNVMESLYVLSMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +  +    A V    G   + I L  +  ++    ++N +  R + +    L +  
Sbjct: 61  IRWDA-DYGKIKADVFRKYGKLPLEITLSKKGKKA----KVNHLEQRRLSDYIGQLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180
             P    +  G    RRRF+D  +  I P +   ++++++L++ RN +L + Y     + 
Sbjct: 116 FAPEDLHLVKGSPQVRRRFIDMEIGQISPVYLHDLVNYQKLLKQRNHILKQHYGKQTIND 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSLTGF--LDGKFD 237
                   Q  E  VKI   R +         ME +QK   P H  +S  G   L  ++ 
Sbjct: 176 VMFEVYTEQFIEAAVKIIRKRYQF--------MELLQKWAEPIHHGIS-RGLEQLQIRY- 225

Query: 238 QSFCALKEEYA---------KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
           Q    LK E+          +KL + RK +     TL+GPHR +L   + +      +GS
Sbjct: 226 QPISGLKPEWTPEEMASFLEQKLIEVRKREIERGVTLVGPHRDELQF-FVNGYDVQTYGS 284

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-QIFM 347
            G+Q+   + + LA   LI    G AP+LLLD++ + LD+ +++ L   +   GS Q F+
Sbjct: 285 QGQQRTTALSLKLAEIELIKQEVGEAPVLLLDDVLSELDDYRQSHLLNTIK--GSVQTFV 342

Query: 348 TGT 350
           T T
Sbjct: 343 TTT 345


>gi|306834588|ref|ZP_07467701.1| recombination protein F [Streptococcus bovis ATCC 700338]
 gi|304423390|gb|EFM26543.1| recombination protein F [Streptococcus bovis ATCC 700338]
          Length = 364

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 159/347 (45%), Gaps = 13/347 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  +RNY +  L F     +F+G N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +     +   ++   G   + I L ++     R  ++N +    + +    + +    
Sbjct: 63  FDAKELLVS-GILQRSSGTVPLDISLSSKG----RVTKVNHLKQAKLSDYIGVMTVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L T    D+ + + 
Sbjct: 118 PEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQRNTYLKTAEKVDTDFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+A+ G ++   R++ I+ L        Y       H+ +    +L     Q    +
Sbjct: 178 LDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGIEHLSIH---YLSSVSFQEKDDI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           K  + K L   ++ D   + T +GPHR DL  ++    +    GS G+ + +++ + +A 
Sbjct: 235 KPNFLKALQKNQQRDIFKKNTSVGPHRDDL--EFFINDMPANFGSQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
             LI   TG  PILLLD++ + LD  ++  L +++ D   Q F+T T
Sbjct: 293 IELIRTVTGDYPILLLDDVMSELDNYRQTELLKMIIDKNVQTFITTT 339


>gi|15902031|ref|NP_346635.1| recombination protein F [Streptococcus pneumoniae TIGR4]
 gi|111658642|ref|ZP_01409292.1| hypothetical protein SpneT_02000232 [Streptococcus pneumoniae
           TIGR4]
 gi|148984530|ref|ZP_01817818.1| recombination protein F [Streptococcus pneumoniae SP3-BS71]
 gi|148988871|ref|ZP_01820286.1| recombination protein F [Streptococcus pneumoniae SP6-BS73]
 gi|149003094|ref|ZP_01828003.1| recombination protein F [Streptococcus pneumoniae SP14-BS69]
 gi|149007732|ref|ZP_01831341.1| recombination protein F [Streptococcus pneumoniae SP18-BS74]
 gi|149020146|ref|ZP_01835120.1| recombination protein F [Streptococcus pneumoniae SP23-BS72]
 gi|168491759|ref|ZP_02715902.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC0288-04]
 gi|168494012|ref|ZP_02718155.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC3059-06]
 gi|169832646|ref|YP_001695579.1| recombination protein F [Streptococcus pneumoniae Hungary19A-6]
 gi|237651040|ref|ZP_04525292.1| recombination protein F [Streptococcus pneumoniae CCRI 1974]
 gi|237821153|ref|ZP_04596998.1| recombination protein F [Streptococcus pneumoniae CCRI 1974M2]
 gi|307128490|ref|YP_003880521.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           670-6B]
 gi|20978636|sp|Q97N44|RECF_STRPN RecName: Full=DNA replication and repair protein recF
 gi|226737842|sp|B1IAD9|RECF_STRPI RecName: Full=DNA replication and repair protein recF
 gi|14973738|gb|AAK76275.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           TIGR4]
 gi|147758835|gb|EDK65831.1| recombination protein F [Streptococcus pneumoniae SP14-BS69]
 gi|147760727|gb|EDK67699.1| recombination protein F [Streptococcus pneumoniae SP18-BS74]
 gi|147923307|gb|EDK74421.1| recombination protein F [Streptococcus pneumoniae SP3-BS71]
 gi|147925682|gb|EDK76758.1| recombination protein F [Streptococcus pneumoniae SP6-BS73]
 gi|147930824|gb|EDK81805.1| recombination protein F [Streptococcus pneumoniae SP23-BS72]
 gi|168995148|gb|ACA35760.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183573999|gb|EDT94527.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC0288-04]
 gi|183575893|gb|EDT96421.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC3059-06]
 gi|301795136|emb|CBW37609.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           INV104]
 gi|301800959|emb|CBW33621.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           OXC141]
 gi|306485552|gb|ADM92421.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           670-6B]
 gi|332077793|gb|EGI88252.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA41301]
 gi|332199049|gb|EGJ13130.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA47901]
          Length = 365

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239
           ++ Q+ + G ++   R++ I  L S    + +K++F        + +S    ++    Q+
Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISNHQA 372
           E      I + +A
Sbjct: 348 ENLSIFTIQDGKA 360


>gi|199598230|ref|ZP_03211651.1| Recombinational DNA repair ATPase (RecF pathway) [Lactobacillus
           rhamnosus HN001]
 gi|199590833|gb|EDY98918.1| Recombinational DNA repair ATPase (RecF pathway) [Lactobacillus
           rhamnosus HN001]
          Length = 372

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 166/357 (46%), Gaps = 23/357 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L++  +RNYA +   F  +  + +G+N  GKTN+LEAI  L+  R  R  +  ++
Sbjct: 1   MKLDHLSLKNYRNYAMVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FARV G       + +LE       +  +I+ +    + +   H  +  
Sbjct: 61  IRFGSD-----FARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D     + P++   +  ++  ++ RN  L +  +    D 
Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLD 233
            +   +   +A  G ++  AR +++  +S         I +  +K  F + +  +   L 
Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAY-QTQVAADLR 234

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
              +Q + AL   +AK+    R+++  +  +L+GPHR D++    DK +    GS G+Q+
Sbjct: 235 QDSEQVYEALGALFAKQ--QSREIEQGT--SLVGPHRDDVLFIVNDKDVA-NFGSQGQQR 289

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              + + LA   L+ + TG  P+LLLD++ + LD  ++  L + +     Q F+T T
Sbjct: 290 TTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAIRQTHLLKAI-QAKVQTFLTTT 345


>gi|294619748|ref|ZP_06699153.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1679]
 gi|291594018|gb|EFF25487.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1679]
          Length = 374

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 165/357 (46%), Gaps = 23/357 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  --IG---WTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLD 233
            +   +  Q+A  G K+  AR + +       N+L   I    QKE    +++     +D
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITH--QKE---QLEIEYLTAVD 230

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                +   ++E++   L   +K D     T +GPHR DL   + ++     +GS G+Q+
Sbjct: 231 SLETHTQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSF-FINQKNVQTYGSQGQQR 289

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              + + LA   LI   TG  PILLLD++ + LD+ ++  L   + +   Q F+T T
Sbjct: 290 TTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDSRQLHLLETI-EGKVQTFLTTT 345


>gi|306834801|ref|ZP_07467865.1| recombination protein F [Corynebacterium accolens ATCC 49726]
 gi|304569329|gb|EFM44830.1| recombination protein F [Corynebacterium accolens ATCC 49726]
          Length = 397

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 172/376 (45%), Gaps = 29/376 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L++ +FR++  L+L      T+FVG NG GKTNI+EA+ + +     R +  + + R
Sbjct: 3   IRDLDVRDFRSWPELKLELGPGITLFVGRNGFGKTNIVEAVGYTAHLSSHRVSHDSPLVR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+ S   +   V +G E    + IK       +    QIN   +R   EL   ++    
Sbjct: 63  QGAQSARVSLTAVNQGRELTTHLLIK-----PHAANQAQINRTRLRSPRELLGVVKTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178
            P    +  G    RR +LD ++ +  PR      D++++++ RN LL         GY 
Sbjct: 118 SPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASASLRRGYG 177

Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIKLSL 228
           DS   S++      +AQ+A LG ++  AR+ +++AL   I      +  E+ P H++   
Sbjct: 178 DSDGASALSTLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYAGLAPESRPAHVEYKS 237

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
           T  +D    +   A+      +L + R+ +     +L+GPHR DL++   D+       S
Sbjct: 238 T--IDTSDREVLEAV---MLTELANARQREIERGISLVGPHRDDLVLHLGDQPAK-GFAS 291

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +       +   
Sbjct: 292 HGETWSYAIALRLAEFELLREEGGSDPVLILDDVFAELDAKRRTQLVHLAATAEQVLITA 351

Query: 349 GTDKSVFDSLNETAKF 364
             D+ + D+L    ++
Sbjct: 352 AVDEDLPDNLEPIVRY 367


>gi|148993621|ref|ZP_01823092.1| recombination protein F [Streptococcus pneumoniae SP9-BS68]
 gi|168489301|ref|ZP_02713500.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           SP195]
 gi|147927842|gb|EDK78864.1| recombination protein F [Streptococcus pneumoniae SP9-BS68]
 gi|183572210|gb|EDT92738.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           SP195]
 gi|332071670|gb|EGI82163.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA17570]
          Length = 365

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239
           ++ Q+ + G ++   R++ I  L S    + +K++F        + +S    ++    Q+
Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 234 ---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISNHQA 372
           E      I + +A
Sbjct: 348 ENLSIFTIQDGKA 360


>gi|294630341|ref|ZP_06708901.1| RecF protein [Streptomyces sp. e14]
 gi|292833674|gb|EFF92023.1| RecF protein [Streptomyces sp. e14]
          Length = 373

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 159/361 (44%), Gaps = 27/361 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   +  D   T FVG NG GKTN++EA+ +L+     R A+ A +
Sbjct: 1   MHVTHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLAALGSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 61  IRMGA---DRAVIRAQVRQGERQQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP---HIKLSLT 229
              D S     +  +A  G ++   R+++I AL  L     E +     P     K S  
Sbjct: 177 RSMDMSTLDVWDQHLARAGAELLARRLDLIAALQPLADKAYEQLAPGGGPLALEYKPSAP 236

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           G    + D     L  +    L D RK +     TL+GPHR DL++    +     + S 
Sbjct: 237 GEAHTRED-----LYAQLTAALADARKQEIERGVTLVGPHRDDLLLK-LGQLPAKGYASH 290

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T 
Sbjct: 291 GESWSYALALRLASYDLL-RAEGNEPVLILDDVFAELDARRRERLAELVAP-GEQVLVTA 348

Query: 350 T 350
            
Sbjct: 349 A 349


>gi|313889502|ref|ZP_07823148.1| DNA replication and repair protein RecF [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122114|gb|EFR45207.1| DNA replication and repair protein RecF [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 364

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 168/377 (44%), Gaps = 37/377 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L ++ +RNY  ++  F     +F+G+N  GKTN LEAI F++  R  R       TR
Sbjct: 3   LKELTLTNYRNYEQIQTKFVPGLNVFIGNNAQGKTNFLEAIYFIALTRSHR-------TR 55

Query: 67  IGSP--SFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           I      F     +V G +E  + I I LE    +  R  +IN +    + +   ++++ 
Sbjct: 56  IDKELIHFLKDDLKVSGKIERTSGI-ISLEIALTKKGRITKINSLKQAKLSDYIGNMKVV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSW 182
              P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L T    +S +
Sbjct: 115 LFAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSQYNYVLKQRNTYLKTASSINSDF 174

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC- 241
              ++ Q+A+ G ++   R++ I AL     E   + +F           DG  D +   
Sbjct: 175 LDVLDEQLADYGTRVIHQRMQFIEALE----EEAHRHHF--------AISDGLEDLTLSY 222

Query: 242 ----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
                     ++KE + + L + R+ D   + T +GPHR D++    D     A  S G+
Sbjct: 223 QSSIVLEPKESIKERFIEALQNNRQKDMFKKNTSVGPHRDDILFYINDMNANFA--SQGQ 280

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + +++ + +A   L+   TG  PILLLD++ + LD  ++  L   +     Q F+T T 
Sbjct: 281 HRSLILSLKMAEVSLMKELTGENPILLLDDVMSELDNLRQTKLLETIIQEHVQTFITTTS 340

Query: 352 KSVFDSLNETAKFMRIS 368
                SL    K   +S
Sbjct: 341 LEHLSSLPPDIKTFYVS 357


>gi|153811990|ref|ZP_01964658.1| hypothetical protein RUMOBE_02383 [Ruminococcus obeum ATCC 29174]
 gi|149831889|gb|EDM86975.1| hypothetical protein RUMOBE_02383 [Ruminococcus obeum ATCC 29174]
          Length = 362

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 164/356 (46%), Gaps = 26/356 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  FRNY  L+L FD    IF GDN  GKTNILE++      +  + +   ++ R
Sbjct: 3   IESIELKNFRNYQDLQLDFDKGTNIFYGDNAQGKTNILESVYICGTTKSHKGSKDKEIIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125
            G        + +  M    ++S K++    ++  + + IN + I+   EL   + + + 
Sbjct: 63  FGEEE-----SHIRMMVKKDELSYKIDMHLRKNKAKGVAINGLRIKKARELFGIVNLVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  +D  +   +  +  ++  RNRLL + Y + S   +
Sbjct: 118 SPEDLNIIKNGPGERRRFMDLELCQLDQIYLTDLAGYNHIVNQRNRLLKDLYQNPSLRET 177

Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQS 239
           +E    QM + G KI   R + +  L+ +I +         I  +LTG    L+  ++ S
Sbjct: 178 LEIWDIQMLQYGKKIIEKRRDFVRDLNDVIQD---------IHRNLTGGEEHLEVIYEPS 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVG 298
                E + + L   R+ D   + T  GPHR DL   +    I I   GS G+Q+   + 
Sbjct: 229 --TESECFEETLKKNRERDMRMKMTSAGPHRDDLC--FMVNGIDIRKFGSQGQQRTAALS 284

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           + L+   L+       PILLLD++ + LD +++  L   + DI + I  TG D  V
Sbjct: 285 LKLSEIYLVKEKIKDTPILLLDDVLSELDSNRQTYLLDSIHDIQTLITCTGLDDFV 340


>gi|329938635|ref|ZP_08288031.1| DNA recombination and repair protein RecF [Streptomyces
           griseoaurantiacus M045]
 gi|329302126|gb|EGG46018.1| DNA recombination and repair protein RecF [Streptomyces
           griseoaurantiacus M045]
          Length = 373

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 166/370 (44%), Gaps = 28/370 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  DA  T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYAHVEVPLDAGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGA---ERAIVRAQVRQGERQQLLELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFP---HIKLSLT 229
              D S     +  +A  G ++   R+++I AL  L     E +     P     + S  
Sbjct: 177 RSLDLSTLDVWDQHLARAGAELLARRLDLIAALRPLTDKAYEQLAPGGGPVGLEYRPSAP 236

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           G    + D     L E+    L + RK +     TL+GPHR DL++    +     + S 
Sbjct: 237 GEAHTRED-----LHEQLLAALAEARKQEIERGVTLVGPHRDDLLLK-LGQLPAKGYASH 290

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T 
Sbjct: 291 GESWSYALALRLASYDLL-RAEGNEPVLVLDDVFAELDVRRRERLAELVAP-GEQVLVTA 348

Query: 350 T-DKSVFDSL 358
             D  V D L
Sbjct: 349 AVDDDVPDVL 358


>gi|260887488|ref|ZP_05898751.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC
           35185]
 gi|330837870|ref|YP_004412450.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC
           35185]
 gi|260862775|gb|EEX77275.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC
           35185]
 gi|329745634|gb|AEB98990.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC
           35185]
          Length = 369

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 169/373 (45%), Gaps = 29/373 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K K L +  FRNY  L L       +F+G+N  GKTNI EA+ + + GR  R  + AD+
Sbjct: 1   MKAKSLRLKCFRNYEELDLSLSPNINVFLGENAQGKTNIAEALYYAAIGRSHRTNADADL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123
               +P+     A++  +    D+   LE +  R   R ++ N   I+   EL       
Sbjct: 61  IAWDAPA-----AKIGLLFERLDVENTLEFQFQRGRRRSIRKNGEPIK-TKELFGVFNAV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDS 180
              P    +  G   ERRRFLD  +    P +   ++ + R++  RN LL    E     
Sbjct: 115 LFSPEDLFLIKGAPAERRRFLDGEISQASPSYGHELMQYTRILTQRNSLLKKIRERRAGK 174

Query: 181 SWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGK 235
              S  + Q+A+    I   R   V+ +N L++L+   +   KEN     LSL+  L G 
Sbjct: 175 EMLSLWDEQLAKSAAHIVEKRFLAVKKLNMLANLMQRRISAGKEN-----LSLSYELCGA 229

Query: 236 FDQSFCALKE---EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
            ++  C  +E    Y KKL +   +D +   T +GP R D+ ++  +     + GS G+Q
Sbjct: 230 EEEPPCVTEELVPWYNKKLEESLDLDVLRGSTSVGPQRDDIRLE-VNGVNLRSFGSQGQQ 288

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +  ++ + L+    + + TG  P+LLLD++ + LD  +R  L   +     Q  +T TD 
Sbjct: 289 RTGVLALKLSELEFLRSETGEYPVLLLDDVMSELDGTRREKLLDFIGREHIQTLLTATDA 348

Query: 353 SVFDSLNETAKFM 365
           +         KFM
Sbjct: 349 AYLPE-----KFM 356


>gi|161830866|ref|YP_001595903.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 331]
 gi|215918858|ref|NP_819059.2| DNA replication and repair protein RecF [Coxiella burnetii RSA 493]
 gi|218511878|sp|Q83FD6|RECF_COXBU RecName: Full=DNA replication and repair protein recF
 gi|226737785|sp|A9N902|RECF_COXBR RecName: Full=DNA replication and repair protein recF
 gi|161762733|gb|ABX78375.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 331]
 gi|206583742|gb|AAO89573.2| DNA replication and repair protein [Coxiella burnetii RSA 493]
          Length = 357

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 156/349 (44%), Gaps = 24/349 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +++FRN A + +   +Q   F G NG GKT+ILE+I +LS GR FR      + +  +
Sbjct: 7   LKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQDNT 66

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F        G +    I + +E RD    RCL+IN           K L +  L    
Sbjct: 67  DRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLSAMS 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            R        RR+FLD ++F ++P         +R ++ RN  L +        +  +  
Sbjct: 123 HRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAAL-KAKLPLGEITHWDKM 181

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           + E G +++  R  ++     L  + +Q+    +P I     G+             E+Y
Sbjct: 182 LVEDGERLHQLRQNVVTEFKPLFTQMLQQFLPAYPLIGHYFRGW------------SEKY 229

Query: 248 A--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHA 304
           +  ++L    K D     T  GP R+D  +   D  A  I   S G+QK+V   +  A  
Sbjct: 230 SLMEQLQINLKQDLQRGYTQAGPQRADFRLTLGDLPAQDIL--SQGQQKLVTYALHFAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            L+   TG +PI L+D++ A LD +KR+ +  +V  + SQ+F++G D +
Sbjct: 288 LLLKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPN 336


>gi|298246029|ref|ZP_06969835.1| DNA replication and repair protein RecF [Ktedonobacter racemifer
           DSM 44963]
 gi|297553510|gb|EFH87375.1| DNA replication and repair protein RecF [Ktedonobacter racemifer
           DSM 44963]
          Length = 401

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 169/377 (44%), Gaps = 32/377 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  FRNY  L L        F G+N  GKTN+LEA+S L+    F  +S  +V  
Sbjct: 3   LTHLTLEYFRNYKHLDLTLGPGLFFFCGENAQGKTNLLEAVSMLATATSFHASSDREVVN 62

Query: 67  IGSPSFFSTF-ARVEGMEGLADISIKL-------ETRDDRSVRC--------------LQ 104
             +P   +    RV   E  A I I +        ++DD S +                +
Sbjct: 63  WQAPDHVAHLQGRVSRHEDDAQIEISVFDPTPPTFSQDDTSQQTSRGLDLPANTPRKRYK 122

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
           +N V  R +D + + +++    P    +  G   ERRRF DR +  + P + + ++ + +
Sbjct: 123 LNGVPRRTIDIIGQ-MKVVLFAPVDLHLVDGSPEERRRFFDRALCQVSPHYCQALVRYRK 181

Query: 165 LMRGRNRLLT---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           ++  R+ LL    +   D      ++ Q+ +L  +I   R  M+ +++ L     Q  + 
Sbjct: 182 VVTQRSALLKRIRDHQEDPRLIDYLDDQLTQLANQIMHERHHMLTSINQLANPLQQAISG 241

Query: 222 PHIKLSLTGFLDGKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
              +L +        D+S      ++ Y ++L   R+ ++M    L+GPHR DL  ++  
Sbjct: 242 GRERLEIIYRPSFSVDESLSLPEAQKHYQQQLQAIRRKETMQGVCLLGPHRDDL--EFLV 299

Query: 280 KAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
             +  +++GS G+Q+   +   LA    + + TG  P+LLLD++ + LD  +R  L + V
Sbjct: 300 NGVNMLSYGSRGQQRTAALSTKLAELAFMRSNTGDEPVLLLDDVFSELDAVRRQYLLQEV 359

Query: 339 TDIGSQIFMTGTDKSVF 355
                Q+ +T TD   F
Sbjct: 360 LS-HQQVLLTATDLESF 375


>gi|22538290|ref|NP_689141.1| recombination protein F [Streptococcus agalactiae 2603V/R]
 gi|25012150|ref|NP_736545.1| recombination protein F [Streptococcus agalactiae NEM316]
 gi|77413654|ref|ZP_00789839.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           515]
 gi|51316463|sp|Q8DWQ8|RECF_STRA5 RecName: Full=DNA replication and repair protein recF
 gi|51316464|sp|Q8E2K7|RECF_STRA3 RecName: Full=DNA replication and repair protein recF
 gi|22535205|gb|AAN01014.1|AE014289_14 recF protein [Streptococcus agalactiae 2603V/R]
 gi|24413694|emb|CAD47774.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160309|gb|EAO71435.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           515]
          Length = 369

 Score =  109 bits (273), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 166/366 (45%), Gaps = 14/366 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +++  +RNY   ++ F     IF+G N  GKTN LEAI FL+  R  R  S  ++  
Sbjct: 3   IKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   T   V    G  ++ I+L  +     R  ++N +    + +    + +    
Sbjct: 63  FKHHDVQIT-GEVIRKSGHLNLDIQLSEKG----RITKVNHLKQAKLSDYIGAMTVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+FLD  +  I P +   + ++  +++ RN  L T    D ++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+A+ G ++   R + I AL+       Y+      H+ +     ++   D+S  ++
Sbjct: 178 LDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFT-DKS--SI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +  +L      D   + T IGPHR D+     D   T A  S G+Q+ +++ + LA 
Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFINDINATFA--SQGQQRSLILSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   T   PILLLD++ + LD  ++  L   + +   Q F+T T      +L +  K
Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351

Query: 364 FMRISN 369
              +S+
Sbjct: 352 IFNVSD 357


>gi|242372599|ref|ZP_04818173.1| recombination protein F [Staphylococcus epidermidis M23864:W1]
 gi|242349654|gb|EES41255.1| recombination protein F [Staphylococcus epidermidis M23864:W1]
          Length = 371

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 170/386 (44%), Gaps = 33/386 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEEVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F S +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNSDYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q A+  +K+ + R   I  L  L            E +  +  P +KLS   
Sbjct: 176 TMLEVLNQQFAQYALKVTLRREHFIKELEELAQPIHSGITNEREKLALKYLPSLKLS--- 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGS 288
                +++    L +E    L D  K +      L GPHR DL   V+  D  I   +GS
Sbjct: 233 ----DYEKDESELLDEVMTLLNDNLKREKERGVCLYGPHRDDLGFNVNGMDAQI---YGS 285

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T
Sbjct: 286 QGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVT 344

Query: 349 GTDKSVFD-SLNETAKFMRISNHQAL 373
            T     D  +   AK  RIS  + L
Sbjct: 345 TTSVDGIDHEIMNNAKLYRISQGELL 370


>gi|152994046|ref|YP_001338881.1| recombination protein F [Marinomonas sp. MWYL1]
 gi|189039628|sp|A6VR67|RECF_MARMS RecName: Full=DNA replication and repair protein recF
 gi|150834970|gb|ABR68946.1| DNA replication and repair protein RecF [Marinomonas sp. MWYL1]
          Length = 368

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 168/350 (48%), Gaps = 19/350 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+IS  RN +S+R     Q  + VG NG GKT++LEAI  LS GR FR   +    +  +
Sbjct: 6   LDISHVRNLSSVRFEPSPQVNVIVGKNGSGKTSVLEAIHLLSFGRSFRSHKHKTYIQHEN 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +    FA++   +G + I + L+   D  +  ++I     + V EL + L +  + P  
Sbjct: 66  DACI-VFAQLHQKQG-SPIRVGLQRHRDGQID-VRIQGQRAQSVIELAERLPVQLINPDA 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            R+  G    RR+F+D   F  D    +    +++ ++ RN LL  G    S  ++ + +
Sbjct: 123 FRLLEGSPSIRRQFIDWGAFHFDKDFIQAWRGWQKALKQRNTLLRRGKISLSLLAAFDQE 182

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFDQSFCALKEEYA 248
           +  LG ++N +R   +  L+     +V+  +    +LS++  F  G   Q   A+  E  
Sbjct: 183 LIRLGEQVNQSRKAYVEKLTP---HFVKVLSLLTTELSVSLQFFQGWDAQKNLAMAVEA- 238

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYC--DKAITIAHGSTGEQKVVLVGIFLAHARL 306
                GR+ D     T  GP R+DL V     D   T+   S G+QK+V+  + +A  +L
Sbjct: 239 -----GRERDIELGYTHTGPQRADLRVKTATGDALDTL---SRGQQKLVVSALKIAQGQL 290

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + +  G   + L+D++ A LD + R  L +++  + SQIF+T  +    D
Sbjct: 291 LID-MGRPLVFLVDDLPAELDANHRQKLCQLLESLNSQIFITSVEPDTTD 339


>gi|270291841|ref|ZP_06198056.1| DNA replication and repair protein RecF [Streptococcus sp. M143]
 gi|270279369|gb|EFA25211.1| DNA replication and repair protein RecF [Streptococcus sp. M143]
          Length = 365

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 167/370 (45%), Gaps = 22/370 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLTIKTFRNYKETKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE       R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +    D ++ S 
Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSNQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALK 244
           ++ Q+ E G ++   R++ I  L +    + QK+   H+++S  +  L   +  +     
Sbjct: 178 LDDQLVEYGCRVIKHRIKFIKDLEN----FGQKK---HLEISNQSEELSISYQSTVNFTN 230

Query: 245 EE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           EE     +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 231 EEVLMDSFKMALEKSRSRDLFKKNTGVGPHRDD--IAFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITKESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISN 369
           E      I N
Sbjct: 348 ENLSIFNIRN 357


>gi|322390514|ref|ZP_08064032.1| recombination protein F [Streptococcus parasanguinis ATCC 903]
 gi|321142788|gb|EFX38248.1| recombination protein F [Streptococcus parasanguinis ATCC 903]
          Length = 364

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 166/367 (45%), Gaps = 13/367 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+I  FRNY  L + F     IF+G N  GKTNILE+I FL+  R  R  +  D+  
Sbjct: 3   LKHLSIQHFRNYQELEVEFHPGLNIFLGQNAQGKTNILESIYFLALTRSHRTRNDRDLIY 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S  F     +V G        + LE       R  ++N +    +     H+ +    
Sbjct: 63  FESTDF-----KVSGQLQRETGPLPLEISLTPKGRITKVNHLKQAKLSNYIGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  + P +   +  +  +++ RN  L      D+++   
Sbjct: 118 PEDLQLIKGSPAGRRKFIDIELGQMKPLYLSDLSQYNHVLKQRNSYLKNSEKIDATFLEV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +++Q+A  G ++   R+E I  L +   E   + +     LS+  +    F +    ++E
Sbjct: 178 LDSQLASFGSRVIHHRLEFIKKLEAKAKEKHTRLSDNKEALSIQ-YQSTVFSEEGNDIEE 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           ++   L   R+ D   + T IGPHR DL   +    +    GS G+ + V++ + LA   
Sbjct: 237 QFLSMLEKNRQKDIFRKTTSIGPHRDDLA--FFINNMNATFGSQGQHRSVVLSLKLAEIE 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+   T   PILLLD++ + LD  ++  L   +++   Q F+T T     D L +  + +
Sbjct: 295 LMEEITREKPILLLDDVMSELDNYRQLQLLETISN-NIQTFITTT---TLDHLKDLLEEL 350

Query: 366 RISNHQA 372
           +I   QA
Sbjct: 351 KIFTVQA 357


>gi|288906437|ref|YP_003431659.1| recombination protein RecF [Streptococcus gallolyticus UCN34]
 gi|306832474|ref|ZP_07465626.1| recombination protein F [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325979499|ref|YP_004289215.1| DNA replication and repair protein recF [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288733163|emb|CBI14744.1| recombination protein RecF [Streptococcus gallolyticus UCN34]
 gi|304425374|gb|EFM28494.1| recombination protein F [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325179427|emb|CBZ49471.1| DNA replication and repair protein recF [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 364

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 158/347 (45%), Gaps = 13/347 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  +RNY +  L F     +F+G N  GKTN LEAI FLS  R  R  +  ++  
Sbjct: 3   IQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +     +   ++   G   + I L ++     R  ++N +    + +    + +    
Sbjct: 63  FDAKELLVS-GILQRSSGTVPLDISLSSKG----RVTKVNHLKQAKLSDYIGVMTVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L T    D+ + + 
Sbjct: 118 PEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQRNTYLKTAEKVDTDFLAV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+A+ G ++   R++ I+ L        Y       H+ +    +L     Q    +
Sbjct: 178 LDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGVEHLSIH---YLSSVSFQEKDDI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           K  + K L    + D   + T +GPHR DL  ++    +    GS G+ + +++ + +A 
Sbjct: 235 KPNFLKALQKNHQRDIFKKNTSVGPHRDDL--EFFINDMPANFGSQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
             LI   TG  PILLLD++ + LD  ++  L +++ D   Q F+T T
Sbjct: 293 IELIKTVTGDYPILLLDDVMSELDNYRQTELLKMIIDKNVQTFITTT 339


>gi|253581084|ref|ZP_04858344.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847620|gb|EES75590.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 361

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 158/352 (44%), Gaps = 24/352 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  FRNY SL L       IF G+N  GKTNILEA+      +  + +   D+ +
Sbjct: 3   IESVQLKNFRNYDSLELDLAQGTNIFYGNNAQGKTNILEALYLCGTTKSHKGSRDKDMIQ 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   S      + + +    D+ +K         + + IN + IR   EL   + + + 
Sbjct: 63  FGKDESHIRMMVKRDELSYRIDMHLK-----KNKAKGVAINGLPIRKASELFGVVNLVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRFLD  +  +D  +   +  +  ++  RN+LL +     S   +
Sbjct: 118 SPEDLNIIKNGPGERRRFLDLELCQLDKIYLTDLASYNHIVNQRNKLLKDLSVQPSLKDT 177

Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQSF 240
           ++    QMAE G KI   R E I  L+    E V+K     I  +LTG L+      +  
Sbjct: 178 LDIWDIQMAEYGRKIIDKRSEFIKELN----ETVRK-----IHGNLTGGLEELNVIYEPD 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGI 299
           C   E+    +   R+ D   R T  GPHR DL V      I I  +GS G+Q+   + +
Sbjct: 229 CT-AEKLESTICANRERDMRMRLTSAGPHRDDLCV--MANGIDIRKYGSQGQQRTAALSL 285

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            L+   ++       P+LLLD++ + LD  ++N L   ++DI + I  TG D
Sbjct: 286 KLSEIYIVKRKIKDTPVLLLDDVLSELDSSRQNYLLDSISDIQTLITCTGLD 337


>gi|324991876|gb|EGC23799.1| recombination protein F [Streptococcus sanguinis SK405]
 gi|324996234|gb|EGC28144.1| recombination protein F [Streptococcus sanguinis SK678]
 gi|327458500|gb|EGF04850.1| recombination protein F [Streptococcus sanguinis SK1]
 gi|327471598|gb|EGF17041.1| recombination protein F [Streptococcus sanguinis SK408]
 gi|327490328|gb|EGF22115.1| recombination protein F [Streptococcus sanguinis SK1058]
          Length = 364

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 165/372 (44%), Gaps = 16/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY    + F     +F+G N  GKTNILEAI FL+  R  R  S  D+  
Sbjct: 3   LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   +   +E   G   + I L  +     R  ++N +    + +    + +    
Sbjct: 63  FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+ + G ++   R++ +  L S   +  +   +N   + +    +L     Q    L
Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTIK---YLSSIPLQKIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D  + +    +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362
            +LI + T   PILLLD++ + LD +++  L   ++ DI  Q F+T T      +L +  
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350

Query: 363 KFMRISNHQALC 374
           K   I   Q + 
Sbjct: 351 KIFTIQQGQIMS 362


>gi|300777028|ref|ZP_07086886.1| recombination protein F [Chryseobacterium gleum ATCC 35910]
 gi|300502538|gb|EFK33678.1| recombination protein F [Chryseobacterium gleum ATCC 35910]
          Length = 359

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 174/373 (46%), Gaps = 38/373 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L++  F+N+   +  F  Q   FVG+NGVGKTNIL+A+ +LS G+ F      D+  
Sbjct: 3   IKKLSLYNFKNHTEKKFEFSPQINCFVGNNGVGKTNILDALHYLSVGKSF--LGNTDLNN 60

Query: 67  IGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH---LRI 122
           I     FF+  A ++  +    I I   T+   + + ++ ND   +  D L  H   L  
Sbjct: 61  IKKEEDFFTIDAEIQNEDSEDIIRI---TQPKEAKKVIKKND---KSYDRLADHIGYLPS 114

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             + P    + S     RR+FLD M+   D  +   +I +++ ++ RN LL     + +W
Sbjct: 115 VMISPYDSNLISDSGESRRKFLDSMISQTDSGYLFDLIQYQKTIQQRNALLKYFAKNRTW 174

Query: 183 -CSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
              S+E     +   G KI   R E +  L+ ++      +NF  I   ++G   GK   
Sbjct: 175 DKDSLEIYDDPIIRFGTKIFNKRKEFVEQLNPIV------QNFYKI---ISG---GKETV 222

Query: 239 SFCA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           S       L++ +   L +  + D M   T  G H+ DL+ +  D  +    GS G+QK 
Sbjct: 223 SVIYESHLLEDSFENLLKESLEKDRMLTYTSKGIHKDDLLFE-MDHVLIKKIGSQGQQKS 281

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK- 352
            L+ + LA   L+   T   PILLLD+I   LD+ + + L  +V  +   QIF+T T + 
Sbjct: 282 FLISLKLAQMSLVKELTKKTPILLLDDIFDKLDDIRVSQLIELVNRESFGQIFITDTHRE 341

Query: 353 ---SVFDSLNETA 362
              SV   +NE +
Sbjct: 342 RTESVVKKINEES 354


>gi|238915980|ref|YP_002929497.1| DNA replication and repair protein RecF [Eubacterium eligens ATCC
           27750]
 gi|259563364|sp|C4Z176|RECF_EUBE2 RecName: Full=DNA replication and repair protein recF
 gi|238871340|gb|ACR71050.1| DNA replication and repair protein RecF [Eubacterium eligens ATCC
           27750]
          Length = 363

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 170/378 (44%), Gaps = 36/378 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + + +FRNY  L + F+    I  GDN  GKTNILE+I   S  +  R +   ++ R
Sbjct: 3   VESVELKDFRNYEFLDMNFNEHVNIIYGDNAQGKTNILESIYMCSTSKSHRGSKDREIVR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   S         GM+   D+ +K         + + +N + I+   EL   + I + 
Sbjct: 63  FGEDESHIKLNVLKHGMKYRIDMHLK-----KNKTKGIAVNGIPIKKAVELFGIINIVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS---- 181
            P    I      ERRRF+D  +  +D  +   ++++ +++  RN+LL +  F  S    
Sbjct: 118 SPEDLNIIKNGPSERRRFMDMELSQLDKIYLSNLVNYNKVLNQRNKLLKDIAFSPSEQLM 177

Query: 182 -----WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                W    + Q+ + G  I   R   I  ++++I +         I   LTG   G  
Sbjct: 178 QTLDIW----DMQLVKYGSLIIKGRKSFIEKINTIISD---------IHSRLTG---GIE 221

Query: 237 DQSFCALKE----EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           +   C + +    ++ +++ + R+ D   + T  GPH+ DLI    D  +   +GS G+Q
Sbjct: 222 NIKVCYVPDVDVNDFEEEVRNSRQKDIKYKVTGKGPHKDDLIFLINDNDVR-KYGSQGQQ 280

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + + L+   L+       P+LLLD++ + LD +++N L   + DI + +  TG ++
Sbjct: 281 RTAALSLKLSEIELVKLVIKDTPVLLLDDVLSELDSNRQNFLINSIGDIQTIVTCTGLEE 340

Query: 353 SVFDSLNETAKFMRISNH 370
            + + +N    F     H
Sbjct: 341 FINNRMNINKIFKVTDGH 358


>gi|319746166|gb|EFV98437.1| recombination protein F [Streptococcus agalactiae ATCC 13813]
          Length = 355

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 164/364 (45%), Gaps = 14/364 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +++  +RNY   ++ F     IF+G N  GKTN LEAI FL+  R  R  S  ++  
Sbjct: 3   IKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   T   V    G  ++ I+L  +     R  ++N +    + +    + +    
Sbjct: 63  FKHHDVQIT-GEVIRKSGHLNLDIQLSEKG----RITKVNHLKQAKLSDYIGAMTVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+FLD  +  I P +   + ++  +++ RN  L T    D ++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+A+ G ++   R + I AL+       Y+      H+ +     ++   D+S  ++
Sbjct: 178 LDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFT-DKS--SI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +  +L      D   + T IGPHR D+     D  I    GS G+Q+ +++ + LA 
Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFGSQGQQRSLILSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   T   PILLLD++ + LD  ++  L   + +   Q F+T T      +L +  K
Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351

Query: 364 FMRI 367
              +
Sbjct: 352 IFNV 355


>gi|291539809|emb|CBL12920.1| recF protein [Roseburia intestinalis XB6B4]
          Length = 368

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 164/355 (46%), Gaps = 28/355 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + ++ FRNY +L++ FD    I  GDN  GKTNILEA       +  + +   ++ R
Sbjct: 3   IQSIELNNFRNYENLQISFDEGTNILFGDNAQGKTNILEAAYLSGTTKSHKGSKDKEMIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +   T     G +   D+ +K     +RS + + +N + ++   EL   L I + 
Sbjct: 63  FGTNEAHLRTMVLKNGKQYQIDMHLK----HNRS-KGIAVNKIPMKKASELFGILNIVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERR FLD  +  +D  +   + ++ +++  RN+LL +  +      +
Sbjct: 118 SPEDLNIIKNGPSERRHFLDAELCQLDKIYLYDLSNYNKILNQRNKLLKDMVYRPELSDT 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           +   + Q+A+ G KI   R + +  L+ ++ E        H ++S      G  ++ F +
Sbjct: 178 LPVWDMQLADTGKKIIRRREKFVKELNEIVHEI-------HYRIS------GGREELFLS 224

Query: 243 LKEEYAKKLFDG-----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +   +  L +      +  D    +T +GPHR DL+       I    GS G+Q+   +
Sbjct: 225 YEPSVSADLLEQELERVKPRDLKQCQTSVGPHRDDLLFSIAGVDIR-KFGSQGQQRTSAL 283

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            + L+   L+  +    P+LLLD++ + LD +++N L   + D  + I  TG D+
Sbjct: 284 SLKLSEIELVRKSIHDTPVLLLDDVLSELDSNRQNYLLNSICDTQTIITCTGLDE 338


>gi|227506185|ref|ZP_03936234.1| recombination protein F [Corynebacterium striatum ATCC 6940]
 gi|227197209|gb|EEI77257.1| recombination protein F [Corynebacterium striatum ATCC 6940]
          Length = 392

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 174/376 (46%), Gaps = 30/376 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L++ +FR++  L +      T+FVG NG GKTNI+EAI +++     R +  A + R
Sbjct: 3   IRELDVRDFRSWPELSIELGPGITLFVGRNGYGKTNIVEAIGYVAHLSSHRVSHDAPLVR 62

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             + +   ST A  +G E  A + IK       +    QIN   ++   EL   ++    
Sbjct: 63  QSAVNARISTTAVNQGRELTAHLLIK-----PHAANQAQINRTRLKSPRELLGVVKSVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178
            P    +  G   ERR +LD ++ +  PR      D++++++ RN LL         GY 
Sbjct: 118 SPEDLAVVRGEPAERRTYLDNIIASRTPRLAGVKADYDKVLKQRNALLKSASSSLRRGYG 177

Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIKLSL 228
           DS   S++      +AQ+A LG ++  AR+ +++ALS LI      +  E+ P HI+   
Sbjct: 178 DSDGASALATLDVWDAQLARLGAQVIEARLALVDALSELIPSAYAGLAPESRPAHIEYKS 237

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
           T  +  +       L E  AK     R+ +     +L+GPHR DL+++   +       S
Sbjct: 238 TIDVSDREVLEAVMLTELAAK-----RQREIERGISLVGPHRDDLVLNLGTQPAK-GFAS 291

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+    G  PIL+LD++ A LD  +R  L  +  +    +   
Sbjct: 292 HGETWSYAISLRLAEFNLLRQ-DGTDPILILDDVFAELDAKRREKLVHLAAEAEQVLITA 350

Query: 349 GTDKSVFDSLNETAKF 364
             D+ +  +L    ++
Sbjct: 351 AVDEDLPGNLEPIVRY 366


>gi|222053120|ref|YP_002535482.1| DNA replication and repair protein RecF [Geobacter sp. FRC-32]
 gi|254790478|sp|B9M7S3|RECF_GEOSF RecName: Full=DNA replication and repair protein recF
 gi|221562409|gb|ACM18381.1| DNA replication and repair protein RecF [Geobacter sp. FRC-32]
          Length = 364

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 171/356 (48%), Gaps = 27/356 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K+  + +  FRN     L+  AQH  IF G+NG GKTN+LE+I  ++  + F+ A  +D
Sbjct: 1   MKLNKIYLQSFRNLQETMLM-PAQHFNIFYGNNGQGKTNLLESIFIMATMKSFKTARSSD 59

Query: 64  VTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           + R G+  S    +   +G+    +I++ L    D   + ++++   +  +D+   HL +
Sbjct: 60  LVRWGAISSLLKGWVERDGV--TREIAVFL----DNQGKKIRVDQKAVTRIDDFFGHLNV 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFD 179
               P    +  GL   RR++LDR VF+ D  +      + ++++ RN LL  G    FD
Sbjct: 114 VVFTPEEVNMVKGLPELRRKYLDRAVFSSDITYLSVYHAYSKILKNRNMLLKRGEKASFD 173

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFD 237
             W      ++ E G  I ++R+  ++AL  L+  + ++   N   + +S   +     D
Sbjct: 174 -IWTE----KLVEQGKNIILSRLAYLDALRDLLKRFYREISGNEEAVDISYRPY---HMD 225

Query: 238 QSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKV 294
            + C   + + +A+ L      +     TL GPHR D  V++      +   GS G+QK 
Sbjct: 226 LADCRGDVADAFAEALAKTATEEERRGTTLAGPHRDD--VEFILNGRPLKQFGSQGQQKS 283

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            ++ + +A    +       PI LLD++S+ LD++++  L   +     Q+F+T T
Sbjct: 284 YVLALKMAETEYLQKKFHSQPIFLLDDLSSELDQERKKNLMEFLKKRDMQVFITTT 339


>gi|148997971|ref|ZP_01825484.1| recombination protein F [Streptococcus pneumoniae SP11-BS70]
 gi|168576099|ref|ZP_02722004.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           MLV-016]
 gi|307068837|ref|YP_003877803.1| recombinational DNA repair ATPase [Streptococcus pneumoniae AP200]
 gi|147755981|gb|EDK63024.1| recombination protein F [Streptococcus pneumoniae SP11-BS70]
 gi|183578126|gb|EDT98654.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           MLV-016]
 gi|306410374|gb|ADM85801.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus
           pneumoniae AP200]
 gi|332198641|gb|EGJ12724.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA41317]
          Length = 365

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 172/373 (46%), Gaps = 22/373 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L ++   D ++ S 
Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSDQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239
           ++ Q+ + G ++   R++ I  L S    + +K++F        + +S    ++    Q+
Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E +   L   +  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 234 ---LSESFKIALEKSKSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISNHQA 372
           E      I + +A
Sbjct: 348 ENLSIFTIQDGKA 360


>gi|306820917|ref|ZP_07454537.1| recombination protein F [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551031|gb|EFM39002.1| recombination protein F [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 356

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 163/359 (45%), Gaps = 34/359 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  +N+  +RNY +L L F     + +G NG GKTNI+EA+ FLS  + FR     +V
Sbjct: 1   MQINNINLKNYRNYENLSLDFSENINMIIGQNGQGKTNIVEAVHFLSFAKSFRTNRDKEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  S +   + ++ ++    I I++   D ++V    IN   I  + +L   + +  
Sbjct: 61  INFGKDSAYIK-SSIQNIDDSYTIDIRISNLDKKAV---NINKNPISKISDLMGIVNVVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   +I S     RR F+++ +  I P +   ++D+ + +  +N LL     D+    
Sbjct: 117 FSPEDTKIVSDTPSFRRGFMNKEISQIKPLYYNILLDYNQTLENKNSLLKTQNPDTIMLD 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENF-----PHIKLSLTGFLDG 234
             + Q++    KI   R + I  +S +  E       QKEN      P+IK         
Sbjct: 177 IYDEQLSAYMEKIIAYRKDFIKQISVIANETHGKISSQKENLIINYSPNIKYE------- 229

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQK 293
                    K+E   KL    + D M R T   G H+ D+ +   D  I    GS G++K
Sbjct: 230 ---------KKEDIFKLLSSSRADDMIRGTSSKGIHKDDIEIMIGDIDIR-KFGSQGQKK 279

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
              + + L+   LI N     P+++LD+I + LD ++R  L   + +I  Q F+T T+K
Sbjct: 280 TATIALKLSEIELIYNMKKEYPVVILDDIFSELDINRRKMLIEKLLNI--QTFITTTEK 336


>gi|240145739|ref|ZP_04744340.1| DNA replication and repair protein RecF [Roseburia intestinalis
           L1-82]
 gi|257202155|gb|EEV00440.1| DNA replication and repair protein RecF [Roseburia intestinalis
           L1-82]
          Length = 368

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 165/355 (46%), Gaps = 28/355 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + ++ FRNY +L + FD    I  GDN  GKTNILEA       +  + +   ++ R
Sbjct: 3   IQSIELNNFRNYENLHISFDEGTNILFGDNAQGKTNILEAAYLSGTTKSHKGSKDKEMIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +   T     G +   D+ +K     +RS + + +N + ++   EL   L I + 
Sbjct: 63  FGTNEAHLRTMVLKNGKQYQIDMHLK----HNRS-KGIAVNKIPMKKASELFGILNIVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERR FLD  +  +D  +   + ++ +++  RN+LL +  +      +
Sbjct: 118 SPEDLNIIKNGPSERRHFLDAELCQLDKIYLSDLSNYNKILNQRNKLLKDMVYRPELSDT 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           +   + Q+A+ G KI   R + +  L+ L+ E        H ++S      G  ++ F +
Sbjct: 178 LPVWDMQLADTGKKIIRRREKFVKELNELVHEI-------HYRIS------GGREELFLS 224

Query: 243 LKEEYAKKLFDGR----KMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +   +  L +      K+  + + +T +GPHR DL+       I    GS G+Q+   +
Sbjct: 225 YEPSVSADLLEQELERVKLRDLKQCQTSVGPHRDDLLFSIAGVDIR-KFGSQGQQRTSAL 283

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            + L+   L+  +    P+LLLD++ + LD +++N L   + D  + I  TG D+
Sbjct: 284 SLKLSEIELVRKSIHDTPVLLLDDVLSELDSNRQNYLLNSICDTQTIITCTGLDE 338


>gi|23014791|ref|ZP_00054591.1| COG1195: Recombinational DNA repair ATPase (RecF pathway)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 174

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 89/149 (59%), Gaps = 5/149 (3%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           + +R  ++ L++++FR Y +LRL  DA+  +  G NG GKTNILEA+SFL PGRG RRA 
Sbjct: 11  LASRPAVRRLSLADFRCYGTLRLETDARPVVLTGPNGAGKTNILEALSFLVPGRGLRRAG 70

Query: 61  YADVTRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
             D+TR G P  S ++  A ++G  G  +I    E   +R  R ++I+    +  D L  
Sbjct: 71  AGDITRHGLPAGSPWAVAASLDGPAGRVEIGTGREAGHER--RSVRIDGKPAKPGD-LAG 127

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRM 147
            +   WL P+MDR+F   +  RRRFLDR+
Sbjct: 128 LVSALWLTPAMDRLFIEGASGRRRFLDRL 156


>gi|320531088|ref|ZP_08032117.1| putative recombination protein F [Selenomonas artemidis F0399]
 gi|320136670|gb|EFW28623.1| putative recombination protein F [Selenomonas artemidis F0399]
          Length = 373

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 171/382 (44%), Gaps = 31/382 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  +RNY  L L FD    IF+G N  GKTNI+EA+ + S GR  R  S A++
Sbjct: 1   MRITRLELHSYRNYEILDLRFDPGVQIFLGANAQGKTNIIEALYYASFGRSHRTTSDAEL 60

Query: 65  TRIGSPS--FFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            R+   +     +F R  V G     ++S   E    R  R L+  + + +   EL   L
Sbjct: 61  IRMEESAGRIDLSFLRHDVPG-----ELSFTFERGHRR--RILRAGEPLRQ--RELVGLL 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGY 177
            +    P    +  G    RRR+LD  +    P +   ++ +  ++R R  +L    E  
Sbjct: 112 PMVLFSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTHILRQRGAILKDIRERL 171

Query: 178 FDSSWCSSIEAQMAELGVKI---NIARVEMINALSSLIM-------EYVQKENFPHIKLS 227
                    + Q+A    +I    IA  E + ALS  +        E        H+   
Sbjct: 172 VPVDALEPWDVQLARSAARIVTRRIAAAERLGALSGRVQAVLAAGEELTISYEIAHVPDD 231

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           L G  DG  D+    L+  Y K L + R  D     T +GPH  DL++     ++  ++G
Sbjct: 232 LPGEKDGMADR----LEVWYNKALSEFRFRDIARGSTGVGPHLDDLVLSVGGMSLR-SYG 286

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+Q+   + + LA    + ++ G APILLLD++ + LD D+R AL   +     Q F+
Sbjct: 287 SQGQQRTGALALKLAELFYLRDSVGEAPILLLDDVMSELDADRRAALLSFIRSEHIQTFI 346

Query: 348 TGTDKSVFDSLNETAKFMRISN 369
           T TD + F +    A +  +++
Sbjct: 347 TATDAAYFPAEEMGATYRYVTH 368


>gi|293553550|ref|ZP_06674177.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1039]
 gi|291602305|gb|EFF32530.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1039]
          Length = 374

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 164/357 (45%), Gaps = 23/357 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L   F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNTEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  --IG---WTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLD 233
            +   +  Q+A  G K+  AR + +       N+L   I    QKE    +++     +D
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITH--QKE---QLEIEYLTAVD 230

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                +   ++E++   L   +K D     T +GPHR DL   + ++     +GS G+Q+
Sbjct: 231 SLETHTQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSF-FINQKNVQTYGSQGQQR 289

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              + + LA   LI   TG  PILLLD++ + LD+ ++  L   + +   Q F+T T
Sbjct: 290 TTALSVKLAEIDLIKEETGEYPILLLDDVMSELDDSRQLHLLETI-EGKVQTFLTTT 345


>gi|148378015|ref|YP_001252556.1| DNA replication and repair protein RecF [Clostridium botulinum A
           str. ATCC 3502]
 gi|148287499|emb|CAL81558.1| DNA replication and repair protein [Clostridium botulinum A str.
           ATCC 3502]
          Length = 367

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 170/365 (46%), Gaps = 39/365 (10%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D
Sbjct: 3   RMYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKD 62

Query: 64  VTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           + +   + ++  T+   E ++   DI+I    +     + + +N + I+ + EL  +L +
Sbjct: 63  LIKWDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNV 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
               P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +W
Sbjct: 118 VMFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNW 171

Query: 183 CSSI-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLS 227
            + I       + Q+++ G  I   R + ++ L ++I + + K+        NF +    
Sbjct: 172 NNKINDIIDIYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY---- 226

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           LT   D  FD +    ++E    L   RK D     T IGPHR D  V   +   T   G
Sbjct: 227 LTNIKD--FDNA----EKELLIVLKKNRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFG 279

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+Q+  ++ +  A   +I N  G  P+LLLD++ + LD +++  +   +  I + I  
Sbjct: 280 SQGQQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKIQTIITC 339

Query: 348 TGTDK 352
           TG ++
Sbjct: 340 TGIEE 344


>gi|300853236|ref|YP_003778220.1| putative DNA replication and repair protein RecF [Clostridium
           ljungdahlii DSM 13528]
 gi|300433351|gb|ADK13118.1| predicted DNA replication and repair protein RecF [Clostridium
           ljungdahlii DSM 13528]
          Length = 366

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 159/353 (45%), Gaps = 24/353 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK+L +  FRNY  L + FD    +F+GDN  GKTNILE+I + S G+  R     ++  
Sbjct: 3   IKYLKLINFRNYKELEMEFDKNLNVFIGDNAQGKTNILESIYYCSIGKSPRTNKDKELIN 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 +           L D  I+++   +   + + IN + +  + EL     +    
Sbjct: 63  WNGKYAYIKAGVYSSSHNLNDKKIEIKIFKE-GKKGININSIRVNKLSELMGIFNVVMFS 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185
           P   +I       RR+FLD  +     R+   ++ + +++  RN LL +    +S     
Sbjct: 122 PEDLKIIKESPSFRRKFLDIELCKFSKRYYYNLVQYNKVLSERNLLLRKRNNSNSDILDI 181

Query: 186 IEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLDGKFDQ 238
            + Q+++ G  I   R + IN LS +       I    +K  F ++  S+T  LD   + 
Sbjct: 182 YDIQLSKYGAVIIDLRNKYINKLSKMGKIIHEDITSQTEKIEFKYV-TSITD-LDNIENS 239

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLV 297
            F  L+          R+ D     TL GPHR D +       I + + GS G+Q+  ++
Sbjct: 240 LFKVLET--------NRQRDIEKGITLYGPHRDDFVTSI--NGINVRNFGSQGQQRTSVL 289

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            +  A   +I   TG  P+LLLD++ + LD +++  +   + +I  Q F+TGT
Sbjct: 290 TMKFASLEIIKEITGEYPVLLLDDVLSELDANRQKYILNSIDEI--QTFITGT 340


>gi|295398132|ref|ZP_06808181.1| recombination protein F [Aerococcus viridans ATCC 11563]
 gi|294973651|gb|EFG49429.1| recombination protein F [Aerococcus viridans ATCC 11563]
          Length = 371

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 162/360 (45%), Gaps = 29/360 (8%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N IK+K     +FRNY  L + F     +F+G+N  GKT++LEAI  +S  R  R A+  
Sbjct: 4   NDIKLK-----DFRNYEDLTVTFSPGVNVFIGENAQGKTSLLEAIYMMSLARSHRTANEK 58

Query: 63  DVTRIGSPSFFSTFARVEG---MEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNK 118
           D        +   FAR+EG        D+ + L  T+  +  +   +N    R+ D + K
Sbjct: 59  DTIH-----WKQDFARIEGSISTRTNPDLPLALTITKSGKRAKVNHLNQN--RMSDYIGK 111

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLT 174
            L +    P    +  G    RR+F+D  +  + P++    + + RL++ RN    +LL 
Sbjct: 112 -LNVVLFAPEDLELIKGAPQLRRKFIDMELGQMSPKYLYESVQYNRLLKQRNAYLKQLLY 170

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH----IKLSLTG 230
           +   D  +   +  Q+A     +   R+  ++ L S         N  H    + L+  G
Sbjct: 171 KETQDQIYLDILTEQLAASATHVIYQRLRFVDQLESWAKPI--HSNISHGLEELTLAYRG 228

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             +   D +  A+ ++   K  + +  +     TL+GPHR DL      + +    GS G
Sbjct: 229 PSELTLDMTEDAIYQQLMTKFKEKKDHEFARGVTLVGPHRDDLTFKVNGRDVQ-KFGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ + LA    +    G  PILLLD++ + LD++++  L + +     Q F+T T
Sbjct: 288 QQRTTVLSMKLAEIECMHEVLGEYPILLLDDVLSELDDERQTHLLKSIQS-KVQTFLTTT 346


>gi|212211672|ref|YP_002302608.1| DNA replication and repair protein [Coxiella burnetii CbuG_Q212]
 gi|226737783|sp|B6J289|RECF_COXB2 RecName: Full=DNA replication and repair protein recF
 gi|212010082|gb|ACJ17463.1| DNA replication and repair protein [Coxiella burnetii CbuG_Q212]
          Length = 357

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 156/349 (44%), Gaps = 24/349 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +++FRN A + +   +Q   F G NG GKT+ILE+I +LS GR FR      + +  +
Sbjct: 7   LKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQDNT 66

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F        G +    I + +E RD    RCL+IN           K L +  L    
Sbjct: 67  DRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLSAMS 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            R        RR+FLD ++F ++P         +R ++ RN  L +        +  +  
Sbjct: 123 HRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAAL-KAKLPLGEITHWDKM 181

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           + E G +++  R  ++     L  + +Q+    +P I     G+             E+Y
Sbjct: 182 LVEDGERLHQLRQNVVTEFKPLFTQMLQQFLPAYPLIGHYFRGW------------SEKY 229

Query: 248 A--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHA 304
           +  ++L    K D     T  GP R+D  +   D  A  I   S G+QK+V   +  A  
Sbjct: 230 SLMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL--SQGQQKLVTYALHFAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            L+   TG +PI L+D++ A LD +KR+ +  +V  + SQ+F++G D +
Sbjct: 288 LLLKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPN 336


>gi|223932878|ref|ZP_03624874.1| DNA replication and repair protein RecF [Streptococcus suis
           89/1591]
 gi|330833788|ref|YP_004402613.1| DNA replication and repair protein RecF [Streptococcus suis ST3]
 gi|223898459|gb|EEF64824.1| DNA replication and repair protein RecF [Streptococcus suis
           89/1591]
 gi|329308011|gb|AEB82427.1| DNA replication and repair protein RecF [Streptococcus suis ST3]
          Length = 364

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 163/361 (45%), Gaps = 10/361 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRNY  L + F     +F+G+N  GKTNILE+I  L+  R  R  +  D+ +   
Sbjct: 6   LELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
               S    +    G   + I L  +     R  ++N +    +     H+ +    P  
Sbjct: 66  KE-LSISGLLHRTSGKVPLDIHLTDKG----RVTKVNHLKQAKLSNYIGHMNVVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188
            ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +    D ++ S ++ 
Sbjct: 121 LQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQRNTYLKSTDKIDENFLSVLDQ 180

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           Q+AE G ++   R++ +  L       VQ+ +    +L++      K       L +++ 
Sbjct: 181 QLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDD-VNLIDKFL 239

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
            +L   RK D   + T +GPHR D  V +    +   +GS G+ + +++ + LA   L+ 
Sbjct: 240 TELERCRKRDLFKKNTGVGPHRDD--VAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMK 297

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
             T   PILLLD++ + LD +++  L   +TD   Q F+T T       L ++ K   I 
Sbjct: 298 EVTREYPILLLDDVMSELDNNRQIKLLETITDT-IQTFITTTSLDHLHKLPDSLKIFHIE 356

Query: 369 N 369
           +
Sbjct: 357 S 357


>gi|290959001|ref|YP_003490183.1| DNA replication protein [Streptomyces scabiei 87.22]
 gi|260648527|emb|CBG71638.1| DNA replication protein [Streptomyces scabiei 87.22]
          Length = 374

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 163/368 (44%), Gaps = 21/368 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    ++ R        +R  D L   +R   
Sbjct: 61  VRMGA---DRAVVRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGFL 232
              D S     +  +A +G  +   R++++ A+  L     E +     P + L      
Sbjct: 177 RTMDLSTLDVWDQHLARVGADLLAQRLDLVAAIQPLADKAYEQLAPGGGP-VGLEYRPSS 235

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
            G    +   L E+    L + RK +     TL+GPHR D+ +    +     + S GE 
Sbjct: 236 PGLVGHAREELYEQLTAALTESRKQEIERGVTLVGPHRDDVTLK-LGQLPAKGYASHGES 294

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-D 351
               + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   D
Sbjct: 295 WSYALALRLASYDLL-RAEGNEPVLILDDVFAELDSRRRERLAELVAP-GEQVLVTAAVD 352

Query: 352 KSVFDSLN 359
             V D L 
Sbjct: 353 DDVPDVLT 360


>gi|332523373|ref|ZP_08399625.1| DNA replication and repair protein RecF [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314637|gb|EGJ27622.1| DNA replication and repair protein RecF [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 363

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 164/365 (44%), Gaps = 13/365 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  +RNY  ++  F     +F+G+N  GKTN LEAI F++  R  R  +  ++  
Sbjct: 3   LKELTLINYRNYEQIQTKFVPGLNVFIGNNAQGKTNFLEAIYFIALTRSHRTRTDKELIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                    + ++E   G+  + I L  +     R  +IN +    + +   ++++    
Sbjct: 63  FLKDD-LKVYGKIERTSGVISLEITLTKKG----RITKINSLKQAKLSDYVGNMKVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L T    +  +   
Sbjct: 118 PEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSQYNYVLKQRNTYLKTAVSINKDFLDV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+A+ G ++   R++ I AL        +   +    +KLS    +  +  +S   +
Sbjct: 178 LDEQLADYGTRVIHQRMQFIEALQQEAHRHHFAISDGLEQLKLSYQSSIALEAKES---I 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++ + + L   R+ D   + T +GPHR D++    D     A  S G+ + +++ + +A 
Sbjct: 235 RDRFMEALLHNRQKDMFKKNTSVGPHRDDIMFYINDMNANFA--SQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   +     Q F+T T      SL    K
Sbjct: 293 VSLMKELTGENPILLLDDVMSELDNLRQTKLLETIIQEHVQTFITTTSLEHLSSLPPDIK 352

Query: 364 FMRIS 368
              +S
Sbjct: 353 TFYVS 357


>gi|153209959|ref|ZP_01947546.1| DNA replication and repair protein RecF [Coxiella burnetii 'MSU
           Goat Q177']
 gi|212217691|ref|YP_002304478.1| DNA replication and repair protein [Coxiella burnetii CbuK_Q154]
 gi|226737782|sp|B6J8S5|RECF_COXB1 RecName: Full=DNA replication and repair protein recF
 gi|120575205|gb|EAX31829.1| DNA replication and repair protein RecF [Coxiella burnetii 'MSU
           Goat Q177']
 gi|212011953|gb|ACJ19333.1| DNA replication and repair protein [Coxiella burnetii CbuK_Q154]
          Length = 357

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 157/349 (44%), Gaps = 24/349 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +++FRN A + +   +Q   F G NG GKT+ILE+I +LS GR FR      + +  +
Sbjct: 7   LKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQDNT 66

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F        G +    I + +E RD +  RCL+IN           K L +  L    
Sbjct: 67  DRFLIFITLYNGTQF---IPLGVE-RDCQGDRCLRINGETASSWSLAAKRLPLCSLSAMS 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            R        RR+FLD ++F ++P         +R ++ RN  L +        +  +  
Sbjct: 123 HRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNASL-KAKLPLGEITHWDKM 181

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           + E G +++  R  ++     L  + +Q+    +P I     G+             E+Y
Sbjct: 182 LVEDGERLHQLRQNIVTEFKPLFTQMLQQFLPAYPLIGHYFRGW------------SEKY 229

Query: 248 A--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHA 304
           +  ++L    K D     T  GP R+D  +   D  A  I   S G+QK+V   +  A  
Sbjct: 230 SLMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL--SQGQQKLVTYALHFAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            L+   TG +PI L+D++ A LD +KR+ +  +V  + SQ+F++G D +
Sbjct: 288 LLLKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPN 336


>gi|291536987|emb|CBL10099.1| recF protein [Roseburia intestinalis M50/1]
          Length = 368

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 163/355 (45%), Gaps = 28/355 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + ++ FRNY +L++ FD    I  GDN  GKTNILEA       +  + +   ++ R
Sbjct: 3   IQSIELNNFRNYENLQISFDEGTNILFGDNAQGKTNILEAAYLSGTTKSHKGSKDKEMIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +   T     G +   D+ +K     +RS + + +N + ++   EL   L I + 
Sbjct: 63  FGTNEAHLRTMVLKNGKQYQIDMHLK----HNRS-KGIAVNKIPMKKASELFGILNIVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERR FLD  +  +D  +   + ++ +++  RN+LL +  +      +
Sbjct: 118 SPEDLNIIKNGPSERRHFLDAELCQLDKIYLSDLSNYNKILNQRNKLLKDMVYRPELSDT 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           +   + Q+ + G KI   R + +  L+ L+ E        H ++S      G  ++ F +
Sbjct: 178 LPVWDMQLIDTGKKIIRRREQFVKELNELVHEI-------HYRIS------GGREELFLS 224

Query: 243 LKEEYAKKLFDG-----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +   +  L +      +  D    +T +GPHR DL+       I    GS G+Q+   +
Sbjct: 225 YEPSVSADLLEQELERVKPRDLKQCQTSVGPHRDDLLFSIAGVDIR-KFGSQGQQRTSAL 283

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            + L+   L+  +    P+LLLD++ + LD +++N L   + D  + I  TG D+
Sbjct: 284 SLKLSEIELVRKSIHDTPVLLLDDVLSELDSNRQNYLLNSICDTQTIITCTGLDE 338


>gi|27466921|ref|NP_763558.1| recombination protein F [Staphylococcus epidermidis ATCC 12228]
 gi|38258564|sp|Q8CQK5|RECF_STAES RecName: Full=DNA replication and repair protein recF
 gi|27314463|gb|AAO03600.1|AE016744_3 DNA repair and genetic recombination protein [Staphylococcus
           epidermidis ATCC 12228]
          Length = 371

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 168/384 (43%), Gaps = 29/384 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F S +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FKSDYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q  E  +K+ + R   I  L +L            E +  +  P +KLS   
Sbjct: 176 TMLEVLNQQFVEYALKVTLRREHFIKELETLAQPIHAGITNDQETLTLDYVPSLKLS--- 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                ++ +   L EE    L D  + +      L GPHR DL  +  +      +GS G
Sbjct: 233 ----NYEANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFN-VNGMDAQTYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346

Query: 351 DKSVFD-SLNETAKFMRISNHQAL 373
                D  +   AK  RIS  + L
Sbjct: 347 SVEGIDHEIMNNAKLYRISQGEIL 370


>gi|327463824|gb|EGF10140.1| recombination protein F [Streptococcus sanguinis SK1057]
          Length = 364

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 164/372 (44%), Gaps = 16/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+  
Sbjct: 3   LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   +   +E   G   + I L  +     R  ++N +    + +    + +    
Sbjct: 63  FTENDLLVS-GLLEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+ + G ++   R++ +  L S   +  +   +N   + +    +L          L
Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVK---YLSSIPLHQIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D  + +    +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLLSSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362
            +LI + T   PILLLD++ + LD +++  L   ++ DI  Q F+T T      +L +  
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350

Query: 363 KFMRISNHQALC 374
           K   I   Q L 
Sbjct: 351 KIFTIQQGQILS 362


>gi|329117358|ref|ZP_08246075.1| DNA replication and repair protein RecF [Streptococcus parauberis
           NCFD 2020]
 gi|326907763|gb|EGE54677.1| DNA replication and repair protein RecF [Streptococcus parauberis
           NCFD 2020]
          Length = 364

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 163/365 (44%), Gaps = 13/365 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L ++ FRNY  L + F     IF+G+N  GKTNILEAI F++  R  R  S  ++ +
Sbjct: 3   LKELTLNHFRNYNDLNINFSEGLNIFIGNNAQGKTNILEAIYFIALTRSHRTRSDKELIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F +    +EG       +I LE       R  +IN +    + E    + +    
Sbjct: 63  -----FSTDRLSIEGKLNRLSGNISLEINLSDKGRITKINSLKQAKLSEYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D  +   
Sbjct: 118 PEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHILKQRNAYLKAARTIDFDFLVV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q++  G ++   R++ I  L      + Q        +++     +D    Q    +
Sbjct: 178 LDQQLSYYGSRVIQQRIQFIADLEKEADAHHQAISNELESLQIKYISSIDTSQSQ---LI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E++ ++L   R+ D   + T IGPHR D  +++    +     S G+ + +++ I +A 
Sbjct: 235 QEKFMEQLERNRQRDIFRKNTSIGPHRDD--IEFYINNMNANFASQGQHRSLILSIKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L +T K
Sbjct: 293 VSLMKILTGDNPILLLDDVMSELDNTRQTKLIETVIQENVQTFITTTSLEHLSQLPKTLK 352

Query: 364 FMRIS 368
              ++
Sbjct: 353 TFHVT 357


>gi|299143459|ref|ZP_07036539.1| DNA replication and repair protein RecF [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517944|gb|EFI41683.1| DNA replication and repair protein RecF [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 361

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 181/377 (48%), Gaps = 26/377 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L +S FRNY  L      Q  +  G+N +GKTN+LEAI  L+ G+ FR    +++
Sbjct: 1   MKILNLELSNFRNYKYLYYNPKGQINVITGENAMGKTNLLEAIYVLTVGKSFRTVKDSEL 60

Query: 65  TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +I G  +     +     E   D++I  + ++  S+    +N      + +  +     
Sbjct: 61  IQIGGEQTNLKALSINFEYEDYLDVNIYKDKKNKYSINSDDMN------LSQYRRDFSSV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              PS   +      ERR++LD ++  +   +   +  + +++  RN+LL +   +    
Sbjct: 115 IFSPSDLNMVKFSPSERRKYLDSLILKLSSVYEHNLYRYRKIIFERNKLLKKN-INYDLL 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+A+ GVKI   R++++    +    YV+   +  + LS    L   +  +   +
Sbjct: 174 EVYDFQLAKYGVKILRERLKILKEFEN----YVK---YHFLNLSGGESLKITYLSTIPLM 226

Query: 244 K-EEYAKKLF-----DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVL 296
             EE  +K+F     + RK D   + T IGPHR D  +D+  + ++   +GS GE + V+
Sbjct: 227 SDEEEMEKIFLDSLKNCRKRDLEIKFTTIGPHRDD--IDFKIENLSAKTYGSQGEIRTVV 284

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + L+   +I N    +P+LLLD++ + LD+++ + L   + ++ + I  T  ++  F 
Sbjct: 285 LSLKLSEVDIIKNYQKNSPLLLLDDVFSELDKNRASYLINSLKNMQTFITSTNLNEENFR 344

Query: 357 SLNETAKFMRISNHQAL 373
           SLN  A F  I N Q +
Sbjct: 345 SLN--ADFYEIKNGQII 359


>gi|149012798|ref|ZP_01833743.1| recombination protein F [Streptococcus pneumoniae SP19-BS75]
 gi|147763229|gb|EDK70168.1| recombination protein F [Streptococcus pneumoniae SP19-BS75]
          Length = 365

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 170/373 (45%), Gaps = 22/373 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGKFDQS 239
           ++ Q+ + G ++   R++ I  L S    + +K++F        + +S    ++    Q+
Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKQN 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E +   L   +  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 234 ---LSESFKIALEKSKSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRISNHQA 372
           E      I + +A
Sbjct: 348 ENLSIFTIQDGKA 360


>gi|220930854|ref|YP_002507762.1| DNA replication and repair protein RecF [Halothermothrix orenii H
           168]
 gi|254790480|sp|B8CZN7|RECF_HALOH RecName: Full=DNA replication and repair protein recF
 gi|219992164|gb|ACL68767.1| DNA replication and repair protein RecF [Halothermothrix orenii H
           168]
          Length = 375

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 165/356 (46%), Gaps = 17/356 (4%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           + +FRN     +  D +  +FVG NG GKTN LEA+  +      R  +  ++ R     
Sbjct: 8   LKDFRNLTENLIKLDNRLNVFVGLNGQGKTNFLEAVYLMGTASSHRTNADRELIRWNQDR 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
                  V+  E L  IS+++    ++ V+ L+INDV    V EL  +L +    P   +
Sbjct: 68  AVVQLYLVKRDEKLK-ISLEI----NKKVKKLEINDVPQERVSELLGNLNVVLFSPEDLK 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187
           +       RR+FLD  +  + P +   +  +  ++  RN LL E       D++     +
Sbjct: 123 LVKEGPHFRRKFLDTELSQVKPYYHYLLKKYNHILSQRNNLLKELMTGNKSDTTLLEVWD 182

Query: 188 AQMAELGVKINIARVEMINALSSLI-MEYVQ-KENFPHIKLSLTGFL-DGKFDQSFCALK 244
            Q+ E+G KI   R+E+I+ L  L  + + Q  +   +I LS    L D   ++    +K
Sbjct: 183 EQLVEIGAKIIQNRIEVIDKLKILARLSHRQITDGLENITLSYESSLSDRIEEKELEEIK 242

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             +  KL + R  +     TL GP R DL +      I   +GS G+Q+   + + LA  
Sbjct: 243 IIFRNKLVNNRNEEITRGYTLAGPQRDDLKITMNGIDIR-KYGSQGQQRTAALSLKLAEL 301

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
             + +  G  P+LLLD++ + LD  +R+ L  I+     Q F+T TD   F +LNE
Sbjct: 302 EFMKSEQGEYPVLLLDDVFSELDNKRRHRLIDIMAH-RVQTFITATD---FFNLNE 353


>gi|296110747|ref|YP_003621128.1| recombination protein F [Leuconostoc kimchii IMSNU 11154]
 gi|295832278|gb|ADG40159.1| recombination protein F [Leuconostoc kimchii IMSNU 11154]
          Length = 372

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 169/372 (45%), Gaps = 55/372 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNYA L+L F     +F+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MELTSLKLVNYRNYADLKLDFSDGVNVFLGENAQGKTNLLESIYVLALTRSHRTSSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R       +   RV+       +S+    +  R+    ++N +    + +    L +  
Sbjct: 61  IRWHEKE-ATISGRVKKNISETPLSLHFSNKGKRA----RVNHLEQSKLSQYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180
             P    +  G    RRRF+D     ++P +      + R+++ RN    RL  +   D+
Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKERNAYLKRLQMKQTTDT 175

Query: 181 SWCSSIEAQMAELGVKINIAR---------------VEMINALSSLIMEYVQKENFPH-- 223
            +   +  Q+ ++G ++ +AR                E+ N L  L + Y    +F    
Sbjct: 176 VFLDVLTEQLVDVGAQVILARQAFTERLQAAAQPIHAEIANQLEQLTLIYQTSVDFESGD 235

Query: 224 ----IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDY 277
               +KL+        F+Q   ALK++ A+++  G         TL+GPHR DL  IV+ 
Sbjct: 236 ELATVKLA--------FEQ---ALKKQQAREIMQG--------STLVGPHRDDLQFIVND 276

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
            D AI    GS G+Q+   + + LA   L+   TG  PILLLD++ + LD +++  L   
Sbjct: 277 NDVAI---FGSQGQQRTTALAVKLAEIDLMQQETGEYPILLLDDVLSELDANRQTHLLLA 333

Query: 338 VTDIGSQIFMTG 349
           + D   Q F+T 
Sbjct: 334 IQD-KVQTFITS 344


>gi|153940655|ref|YP_001389373.1| recombination protein F [Clostridium botulinum F str. Langeland]
 gi|166220705|sp|A7G9B3|RECF_CLOBL RecName: Full=DNA replication and repair protein recF
 gi|152936551|gb|ABS42049.1| DNA replication and repair protein RecF [Clostridium botulinum F
           str. Langeland]
 gi|295317480|gb|ADF97857.1| DNA replication and repair protein RecF [Clostridium botulinum F
           str. 230613]
          Length = 364

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 168/362 (46%), Gaps = 39/362 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+ +
Sbjct: 3   IKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              + ++  T+   E ++   DI+I    +     + + +N + I+ + EL  +L +   
Sbjct: 63  WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +W + 
Sbjct: 118 SPEDLRIIKDYPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNK 171

Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230
           I       + Q+++ G  I   R + ++ L ++I + + K+        NF +    LT 
Sbjct: 172 INDIIDIYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D  FD +    ++E    L   RK D     T IGPHR D  V   +   T   GS G
Sbjct: 227 IKD--FDNA----EKELLIVLKKNRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ +  A   +I N  G  P+LLLD++ + LD +++  +   +  I + I  TG 
Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKIQTIITCTGI 339

Query: 351 DK 352
           ++
Sbjct: 340 EE 341


>gi|303230615|ref|ZP_07317365.1| putative DNA replication and repair protein RecF [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514670|gb|EFL56662.1| putative DNA replication and repair protein RecF [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 366

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 163/364 (44%), Gaps = 26/364 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  L L    +  +  G NG GKTNILEAI   + G+  R    +D+
Sbjct: 1   MRINSLQLFQFRNYKDLTLDLQPEIIVLYGTNGAGKTNILEAIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +          E  E L  ++IKL  +  + +R   +ND  I    EL   L    
Sbjct: 61  LLFNANE-AGIVVNFEKKETLQKVNIKLFRQGPKDIR---LNDTKIS-QKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN LL E     +   
Sbjct: 116 FCPEDLQLIKGSPSGRRRFLDMEISQTSATYYHQLLQYNRLLQQRNTLLKEYRGKQNIPL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSF 240
           +  + Q+A++   I   R+E +  ++ LI    +K         LTG L+     ++Q +
Sbjct: 176 AEWDVQLADMAAFIVKKRMESLKKINLLIDLMNRK---------LTGGLENLTIGYEQPY 226

Query: 241 ------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                    KE +   L +    D     T +GPHR DL   + D       GS G+Q+ 
Sbjct: 227 GEEGHMVYTKEAFYDLLQEALPQDRHRMTTSVGPHRDDLRF-FSDAIDLKKFGSQGQQRT 285

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            ++ + L+    I +  G  P+LLLD++ + LDE +RN L + +     Q  +T TD   
Sbjct: 286 AVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDEARRNNLLQFIHK-RIQTVITTTDIHD 344

Query: 355 FDSL 358
           F+++
Sbjct: 345 FENM 348


>gi|222153952|ref|YP_002563129.1| recombination protein F [Streptococcus uberis 0140J]
 gi|254790492|sp|B9DWE6|RECF_STRU0 RecName: Full=DNA replication and repair protein recF
 gi|222114765|emb|CAR43930.1| DNA replication and repair protein RecF [Streptococcus uberis
           0140J]
          Length = 364

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 161/360 (44%), Gaps = 39/360 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  FRNY ++   F     +F+G+N  GKTN LEAI FL+  R  R  +  ++ +
Sbjct: 3   IKELQLRNFRNYGTVDTEFSPGLNVFIGNNAQGKTNFLEAIYFLALTRSHRTRTDKELIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S +      ++  + G   + ++L  +     R  +IN +    + +    + +    
Sbjct: 63  F-SKNNLQLIGKLNRISGALSLELQLSDKG----RITKINALKQARLSDYIGTMMVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L T    +S + S 
Sbjct: 118 PEDLQLIKGAPSLRRKFIDIDLGQIKPIYLSDLSNYNYVLKQRNTYLKTISTINSDFLSV 177

Query: 186 IEAQMAELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIKLSLTG 230
           ++ Q+A+ G K+   R++ I               N L SLI+ Y         + S+T 
Sbjct: 178 LDEQLADYGSKVIKHRIDFIGELTREANKHHEAISNGLESLIITY---------ESSVT- 227

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                  Q    +KE +   L   R+ D   + T IGPHR D+     D     A  S G
Sbjct: 228 ------QQDHQTIKEAFLLNLQKNRQRDIFKKNTSIGPHRDDIHFFINDMNANFA--SQG 279

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + + +++ + +A   L+   TG  PILLLD++ + LD  ++  L   V +   Q F+T T
Sbjct: 280 QHRSLILSLKMAEVSLMKEMTGDNPILLLDDVMSELDNTRQIKLLETVINENVQTFITTT 339


>gi|325686466|gb|EGD28495.1| recombination protein F [Streptococcus sanguinis SK72]
          Length = 364

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 165/372 (44%), Gaps = 16/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+  
Sbjct: 3   LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   +   +E   G   + I L  +     R  ++N +    + +    + +    
Sbjct: 63  FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+ + G ++   R++ +  L S   +  +   +N   + +    +L     Q    L
Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLQKIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D  + +    +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362
            +LI + T   PILLLD++ + LD +++  L   ++ DI  Q F+T T      +L +  
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350

Query: 363 KFMRISNHQALC 374
           K   I   Q + 
Sbjct: 351 KIFTIQQGQIMS 362


>gi|227549439|ref|ZP_03979488.1| recombination protein F [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078516|gb|EEI16479.1| recombination protein F [Corynebacterium lipophiloflavum DSM 44291]
          Length = 394

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 182/392 (46%), Gaps = 35/392 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++ +FR++  L L  +   T+F G NG GKTNI+EA+ + S     R ++ A + R
Sbjct: 3   VRDLDLRDFRSWPELTLTLEQGATVFAGRNGHGKTNIVEALHYTSTLGSHRVSTDAPLIR 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G S +  S     +G E    + IK            QIN   ++   E+   LR    
Sbjct: 63  SGCSDARVSVTTVNDGRELTTHLLIKAN-----GANQAQINRTRLKSAREVLGVLRTVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178
            P   ++ +G   ERRRFLD +  +  PR      D+++++R RN LL         GY 
Sbjct: 118 SPEDLKLVAGEPAERRRFLDDLATSRAPRLGGAKADYDKVLRQRNALLRSSAHELRRGYG 177

Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIME---YVQKENFPHIKLSLT 229
           D +  S++      + Q+A LG ++   R+E+++ LS  I E    V  E+ P   +S +
Sbjct: 178 DDTGASALATLDVWDLQLARLGAEVTAGRLELLDVLSPHIAESYAAVAPESRP-ASVSYS 236

Query: 230 GFLD-------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
             +D       G+  +    ++     +L   R+ +     TL+GPHR D+++   D   
Sbjct: 237 STVDDAVRSLAGEPSRDPGVIEAAMLTELARRRREEIERTTTLVGPHRDDMVLMLGDTPA 296

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              + S GE     + + LA   L++ + G  P+L+LD++ A LD  +R  L  +     
Sbjct: 297 K-GYASHGETWSYALALHLAEYELLA-SEGSHPVLILDDVFAELDALRRQRLVAVAHSAE 354

Query: 343 SQIFMTGTDKSVFDSLNE--TAKFMRISNHQA 372
             +        + D+L +  +A+++ +S H+A
Sbjct: 355 QVLITAAVGDDLPDNLADAVSARYL-VSMHEA 385


>gi|307707884|ref|ZP_07644361.1| DNA replication and repair protein RecF [Streptococcus mitis NCTC
           12261]
 gi|307616144|gb|EFN95340.1| DNA replication and repair protein RecF [Streptococcus mitis NCTC
           12261]
          Length = 365

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 163/367 (44%), Gaps = 16/367 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  IF+G N  GKTNILEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNIFLGRNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP---HIKLSLTGFLDGKFDQSFCA 242
           ++ Q+ + G ++   R++ I  L      + +K++F     I+     +           
Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLE----HFGRKKHFELSNQIEELSISYQSSVKSTEKED 233

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L E +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++ I LA
Sbjct: 234 LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSIKLA 291

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E  
Sbjct: 292 EIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENL 350

Query: 363 KFMRISN 369
               I +
Sbjct: 351 SIFTIQD 357


>gi|154707128|ref|YP_001423442.1| DNA replication and repair protein [Coxiella burnetii Dugway
           5J108-111]
 gi|226737784|sp|A9KEV0|RECF_COXBN RecName: Full=DNA replication and repair protein recF
 gi|154356414|gb|ABS77876.1| DNA replication and repair protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 357

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 156/349 (44%), Gaps = 24/349 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +++FRN A + +   +Q   F G NG GKT+ILE+I +LS GR FR      + +  +
Sbjct: 7   LKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQDNT 66

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F        G +    I + +E RD    RCL+IN           K L +  L    
Sbjct: 67  DRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLSAMS 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            R        RR+FLD ++F ++P         +R ++ RN  L +        +  +  
Sbjct: 123 HRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAAL-KAKLPLGEITHWDKM 181

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           + E G +++  R  ++     L  + +Q+    +P I     G+             E+Y
Sbjct: 182 LVEDGERLHQLRQNVVTEFRPLFTQMLQQFLPAYPLIGHYFRGW------------SEKY 229

Query: 248 A--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHA 304
           +  ++L    K D     T  GP R+D  +   D  A  I   S G+QK+V   +  A  
Sbjct: 230 SLMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL--SQGQQKLVTYALHFAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            L+   TG +PI L+D++ A LD +KR+ +  +V  + SQ+F++G D +
Sbjct: 288 LLLKEKTGISPIYLIDDLPAELDANKRDCVIDLVNYLESQVFISGIDPN 336


>gi|327467748|gb|EGF13242.1| recombination protein F [Streptococcus sanguinis SK330]
          Length = 364

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 165/372 (44%), Gaps = 16/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+  
Sbjct: 3   LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   +   +E   G   + I L  +     R  ++N +    + +    + +    
Sbjct: 63  FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+ + G ++   R++ +  L S   +  +   +N   + +    +L         +L
Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVK---YLSSIPLHQIDSL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D  + +    +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLLSSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362
            +LI + T   PILLLD++ + LD +++  L   ++ DI  Q F+T T      +L +  
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350

Query: 363 KFMRISNHQALC 374
           K   I   Q + 
Sbjct: 351 KIFTIQQGQIIS 362


>gi|165924210|ref|ZP_02220042.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 334]
 gi|165916344|gb|EDR34948.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 334]
          Length = 357

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 156/349 (44%), Gaps = 24/349 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +++FRN A + +   +Q   F G NG GKT+ILE+I +LS GR FR      + +  +
Sbjct: 7   LKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQDNT 66

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F        G +    I + +E RD    RCL+IN           K L +  L    
Sbjct: 67  DRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLSAMS 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            R        RR+FLD ++F ++P         +R ++ RN  L +        +  +  
Sbjct: 123 HRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNASL-KAKLPLGEITHWDKM 181

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           + E G +++  R  ++     L  + +Q+    +P I     G+             E+Y
Sbjct: 182 LVEDGERLHQLRQNVVTEFKPLFTQMLQQFLPAYPLIGHYFRGW------------SEKY 229

Query: 248 A--KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHA 304
           +  ++L    K D     T  GP R+D  +   D  A  I   S G+QK+V   +  A  
Sbjct: 230 SLMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL--SQGQQKLVTYALHFAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            L+   TG +PI L+D++ A LD +KR+ +  +V  + SQ+F++G D +
Sbjct: 288 LLLKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPN 336


>gi|150387857|ref|YP_001317906.1| DNA replication and repair protein RecF [Alkaliphilus
           metalliredigens QYMF]
 gi|166918718|sp|A6TJ79|RECF_ALKMQ RecName: Full=DNA replication and repair protein recF
 gi|149947719|gb|ABR46247.1| DNA replication and repair protein RecF [Alkaliphilus
           metalliredigens QYMF]
          Length = 368

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 159/333 (47%), Gaps = 11/333 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  FRNY  L+L    +  IFVG+N  GKTN+LEA+   + G+ FR +   ++  
Sbjct: 3   IEGLKLINFRNYEQLQLQLHPKLNIFVGENAQGKTNVLEAVYLSAIGKSFRTSKDQEMIF 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           +        + +V+    + + +I+L    D+  + +++N V +  + EL  +L I    
Sbjct: 63  VDK---HQAYVQVKVKRVVYENNIELRLNVDKK-KNIKVNQVPLLKLGELLGNLNIVLFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P   +I      ERR+F+D  +  I P++   +  + ++++ RN+LL             
Sbjct: 119 PEDLKIIKEGPGERRKFIDGEISQIAPKYYYNLNQYNKILQQRNKLLKYHKGKKLDLEVW 178

Query: 187 EAQMAELGVKINIARVEMINALSSL--IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             Q+A +G  + I R   I  ++ L  +M     +    +++     +  K   +   ++
Sbjct: 179 NEQLANIGASLIIYRRNFIKRIAILAKLMHRKITDGIETLEIEYKSSVLIKDHDTVDQIR 238

Query: 245 EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             + K+L   +  D   RR  TL+GPHR DL  +     +   +GS G+Q+  ++ + LA
Sbjct: 239 VGFLKEL--NQSADEERRRGVTLVGPHRDDLNFNINGLEVK-TYGSQGQQRTAVLSLKLA 295

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
              LI    G  P+LLLD++ + LD  ++N L 
Sbjct: 296 ELELIKGEVGEYPVLLLDDVMSELDMKRQNDLI 328


>gi|327438159|dbj|BAK14524.1| recombinational DNA repair ATPase [Solibacillus silvestris StLB046]
          Length = 372

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 177/381 (46%), Gaps = 31/381 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L ++ +RNY SL L F  +  +F+G+N  GKTN++E+I  L+  +  R A+  ++
Sbjct: 1   MNIERLQLTNYRNYESLTLDFSDKINVFIGENAQGKTNVMESIYVLAMAKSHRTANDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     + + + ++EG+       + +E    +  +  +IN +    +      + +  
Sbjct: 61  IR-----WDADYGKIEGVVNKRYGGVPIELTISKKGKKGKINHLEQTKLSNYIGQMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    I  G    RRRF+D  +  I P +   ++ F+++++ RN LL +     S  S
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKILKQRNHLLKKNMGKQSLAS 175

Query: 185 SI-----EAQMAELGVKINIARVEMINALSSLIMEYVQKENF----PHIKLSLTGFLDGK 235
            +       Q  +  ++I   R + I     L+ ++ +  +F       KL +       
Sbjct: 176 DVMFEIYTEQYVQAAIQIIRKRFQFI----ELLQDWAEPIHFGISRGLEKLVIKYRPVTG 231

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGST 289
            D S+ A  EE A  L   +K++ + +R      TLIGPHR DL     D  + + +GS 
Sbjct: 232 MDASWTA--EEMADYL--TKKLEEVKQREIERGVTLIGPHRDDLQFFVNDYDVQV-YGSQ 286

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q+   + + LA   LI   T   PILLLD++ + LD+ +++ L   +     Q F+T 
Sbjct: 287 GQQRTTALSLKLAEIELIKQETKETPILLLDDVLSELDDYRQSHLLNTIQG-EVQTFVTT 345

Query: 350 TD-KSVFDSLNETAKFMRISN 369
           T  + +     + AK  R++ 
Sbjct: 346 TSVEGIHHDTIQHAKLFRVTQ 366


>gi|120552948|ref|YP_957299.1| DNA replication and repair protein RecF [Marinobacter aquaeolei
           VT8]
 gi|166220714|sp|A1TWJ3|RECF_MARAV RecName: Full=DNA replication and repair protein recF
 gi|120322797|gb|ABM17112.1| DNA replication and repair protein RecF [Marinobacter aquaeolei
           VT8]
          Length = 373

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 169/355 (47%), Gaps = 15/355 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L    FRN  S  + F     +  G NG GKT++LEAI +L  GR FR + +  V   G 
Sbjct: 6   LQTQHFRNLLSAPVEFSPSFNLLYGANGSGKTSVLEAIGYLGLGRSFRVSRHQAVVAHGQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETR----DDRSVR--CLQINDVVIRVVDELNKHLRIS 123
            S  + F  ++      + S K+E R     D S++   L+++   +R +  L  HL +S
Sbjct: 66  -SKLTVFGALDSGLLAQESSEKVEHRIGISRDVSLKETQLRVDGEAVRSLSFLAMHLPVS 124

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P +  I +G   +RR+FLD +VF ++P         +R+   RN++L  G  D S  
Sbjct: 125 VIDPGVFDIVAGGPGKRRQFLDWLVFHVEPSFSSLWQQVQRVTSQRNQMLRNGRLDESLM 184

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              ++Q   L   ++  R  +           + + + P ++     F  G +D+S  AL
Sbjct: 185 RVWDSQYGALAESLSDIRETVFQRFKIAFESVLAELDAPWVEGLKMDFYPG-WDRS-TAL 242

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E     L + R+ +     TL GP+R+D+ + +  + +     S G+QK +++ + +A 
Sbjct: 243 TE----VLVNHREQERRMGHTLYGPNRADIRLKFGGRPVAETF-SRGQQKTLVILMKIAQ 297

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
            +++S+  G     LLD+I+A LD   R  L R + ++  Q+F+T  +    D+L
Sbjct: 298 GKVLSD-LGKQVTFLLDDINAELDVRHRVMLARNLQELRCQVFITSIEHPEPDTL 351


>gi|311897310|dbj|BAJ29718.1| putative DNA replication and repair protein RecF [Kitasatospora
           setae KM-6054]
          Length = 387

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 173/360 (48%), Gaps = 26/360 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +++     R A+ A +
Sbjct: 1   MHVAHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYVATLGSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       + V G  G A + ++LE    ++ R        +R  D L   LR   
Sbjct: 61  IRLGAERAVIRASVVAGG-GRATL-VELELTAGKANRARLNRSDNVRPRDVLGV-LRTVL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY 177
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL         G 
Sbjct: 118 FAPEDLALVKGDPGERRRFLDELLTARTPRLAGVRSDYERVLKQRNALLKTAATARRAGG 177

Query: 178 FDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
             S+  +++E     +A  G ++   R++++ AL  L+ E   ++  P    ++  +   
Sbjct: 178 GKSADLATLEVWDGHLARAGAELTAFRIQLVAALQPLVAE-AYRQLAPDGGDTVLEYRS- 235

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGS 288
            F+      +E+  ++L D   + S+ R+      TL+GPHR +L++          + S
Sbjct: 236 SFEGELPTSREQAERQLLD--ALQSLRRQEIERGLTLVGPHRDELLL-RLGPLPAKGYAS 292

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+    G  P+L+LD++ A LD  +R+ L  +V   G Q+ +T
Sbjct: 293 HGESWSYALALRLASYELL-RAEGEEPVLVLDDVFAELDARRRDRLAELVAG-GEQVLVT 350


>gi|15922994|ref|NP_370528.1| recombination protein F [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925709|ref|NP_373242.1| recombination protein F [Staphylococcus aureus subsp. aureus N315]
 gi|21281733|ref|NP_644819.1| recombination protein F [Staphylococcus aureus subsp. aureus MW2]
 gi|49482257|ref|YP_039481.1| recombination protein F [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49484916|ref|YP_042137.1| recombination protein F [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651112|ref|YP_184915.1| recombination protein F [Staphylococcus aureus subsp. aureus COL]
 gi|88193827|ref|YP_498612.1| recombination protein F [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|148266451|ref|YP_001245394.1| recombination protein F [Staphylococcus aureus subsp. aureus JH9]
 gi|150392484|ref|YP_001315159.1| recombination protein F [Staphylococcus aureus subsp. aureus JH1]
 gi|151220215|ref|YP_001331038.1| recombination protein F [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156978335|ref|YP_001440594.1| recombination protein F [Staphylococcus aureus subsp. aureus Mu3]
 gi|161508270|ref|YP_001573929.1| recombination protein F [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141519|ref|ZP_03566012.1| recombination protein F [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253316842|ref|ZP_04840055.1| recombination protein F [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253733835|ref|ZP_04868000.1| recombination protein F [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|254663938|ref|ZP_05143410.1| recombination protein F [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257424200|ref|ZP_05600629.1| recombination protein F [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426877|ref|ZP_05603279.1| recombination protein F [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429513|ref|ZP_05605900.1| recombination protein F [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432160|ref|ZP_05608523.1| recombination protein F [Staphylococcus aureus subsp. aureus E1410]
 gi|257435121|ref|ZP_05611172.1| recombination protein F [Staphylococcus aureus subsp. aureus M876]
 gi|257793542|ref|ZP_05642521.1| recombination protein RecF [Staphylococcus aureus A9781]
 gi|258411152|ref|ZP_05681431.1| recombination protein RecF [Staphylococcus aureus A9763]
 gi|258420944|ref|ZP_05683878.1| recombination protein F [Staphylococcus aureus A9719]
 gi|258438583|ref|ZP_05689806.1| recombination protein F [Staphylococcus aureus A9299]
 gi|258443961|ref|ZP_05692299.1| recombination protein F [Staphylococcus aureus A8115]
 gi|258446223|ref|ZP_05694383.1| recombination protein F [Staphylococcus aureus A6300]
 gi|258449118|ref|ZP_05697224.1| recombination protein RecF [Staphylococcus aureus A6224]
 gi|258451363|ref|ZP_05699394.1| recombination protein F [Staphylococcus aureus A5948]
 gi|258454404|ref|ZP_05702372.1| recombination protein F [Staphylococcus aureus A5937]
 gi|262049436|ref|ZP_06022308.1| DNA replication and repair protein [Staphylococcus aureus D30]
 gi|262051892|ref|ZP_06024107.1| DNA replication and repair protein [Staphylococcus aureus 930918-3]
 gi|269201694|ref|YP_003280963.1| recombination protein F [Staphylococcus aureus subsp. aureus ED98]
 gi|282894283|ref|ZP_06302513.1| DNA replication and repair protein recF [Staphylococcus aureus
           A8117]
 gi|282907051|ref|ZP_06314899.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282910030|ref|ZP_06317838.1| recombination protein RecF [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912278|ref|ZP_06320074.1| recombination protein RecF [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912918|ref|ZP_06320710.1| RecF protein [Staphylococcus aureus subsp. aureus M899]
 gi|282920723|ref|ZP_06328442.1| DNA replication and repair protein recF [Staphylococcus aureus
           A9765]
 gi|282922546|ref|ZP_06330236.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus C101]
 gi|282927754|ref|ZP_06335368.1| DNA replication and repair protein recF [Staphylococcus aureus
           A10102]
 gi|283959488|ref|ZP_06376929.1| RecF protein [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284023041|ref|ZP_06377439.1| recombination protein F [Staphylococcus aureus subsp. aureus 132]
 gi|293497971|ref|ZP_06665825.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293511561|ref|ZP_06670255.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus M809]
 gi|293550170|ref|ZP_06672842.1| RecF protein [Staphylococcus aureus subsp. aureus M1015]
 gi|294849832|ref|ZP_06790572.1| DNA replication and repair protein recF [Staphylococcus aureus
           A9754]
 gi|295406868|ref|ZP_06816672.1| DNA replication and repair protein recF [Staphylococcus aureus
           A8819]
 gi|295429301|ref|ZP_06821923.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296275683|ref|ZP_06858190.1| recombination protein F [Staphylococcus aureus subsp. aureus MR1]
 gi|297209448|ref|ZP_06925846.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245903|ref|ZP_06929765.1| DNA replication and repair protein recF [Staphylococcus aureus
           A8796]
 gi|297589197|ref|ZP_06947838.1| recombination protein F [Staphylococcus aureus subsp. aureus MN8]
 gi|300911472|ref|ZP_07128921.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH70]
 gi|304379952|ref|ZP_07362681.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|56749543|sp|Q6GD86|RECF_STAAS RecName: Full=DNA replication and repair protein recF
 gi|56749590|sp|Q6GKU1|RECF_STAAR RecName: Full=DNA replication and repair protein recF
 gi|56753681|sp|P68861|RECF_STAAM RecName: Full=DNA replication and repair protein recF
 gi|56753682|sp|P68862|RECF_STAAN RecName: Full=DNA replication and repair protein recF
 gi|56753685|sp|P68863|RECF_STAAU RecName: Full=DNA replication and repair protein recF
 gi|56753686|sp|P68864|RECF_STAAW RecName: Full=DNA replication and repair protein recF
 gi|81695634|sp|Q5HJZ2|RECF_STAAC RecName: Full=DNA replication and repair protein recF
 gi|122540544|sp|Q2G275|RECF_STAA8 RecName: Full=DNA replication and repair protein recF
 gi|166221868|sp|A7WWN1|RECF_STAA1 RecName: Full=DNA replication and repair protein recF
 gi|172048751|sp|A6QD43|RECF_STAAE RecName: Full=DNA replication and repair protein recF
 gi|189039645|sp|A6TXF4|RECF_STAA2 RecName: Full=DNA replication and repair protein recF
 gi|189039646|sp|A5INP5|RECF_STAA9 RecName: Full=DNA replication and repair protein recF
 gi|189039647|sp|A8YYS7|RECF_STAAT RecName: Full=DNA replication and repair protein recF
 gi|13699921|dbj|BAB41220.1| DNA repair and genetic recombination protein [Staphylococcus aureus
           subsp. aureus N315]
 gi|14245771|dbj|BAB56166.1| DNA repair and genetic recombination protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21203168|dbj|BAB93869.1| DNA repair and genetic recombination protein [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49240386|emb|CAG39032.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|49243359|emb|CAG41776.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57285298|gb|AAW37392.1| recF protein [Staphylococcus aureus subsp. aureus COL]
 gi|87201385|gb|ABD29195.1| DNA replication and repair protein, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147739520|gb|ABQ47818.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149944936|gb|ABR50872.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus JH1]
 gi|150373015|dbj|BAF66275.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156720470|dbj|BAF76887.1| DNA repair and genetic recombination protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160367079|gb|ABX28050.1| recombination protein RecF [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728138|gb|EES96867.1| recombination protein F [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257273218|gb|EEV05320.1| recombination protein F [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276508|gb|EEV07959.1| recombination protein F [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279994|gb|EEV10581.1| recombination protein F [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283039|gb|EEV13171.1| recombination protein F [Staphylococcus aureus subsp. aureus E1410]
 gi|257285717|gb|EEV15833.1| recombination protein F [Staphylococcus aureus subsp. aureus M876]
 gi|257787514|gb|EEV25854.1| recombination protein RecF [Staphylococcus aureus A9781]
 gi|257840037|gb|EEV64502.1| recombination protein RecF [Staphylococcus aureus A9763]
 gi|257843134|gb|EEV67549.1| recombination protein F [Staphylococcus aureus A9719]
 gi|257848142|gb|EEV72134.1| recombination protein F [Staphylococcus aureus A9299]
 gi|257850845|gb|EEV74789.1| recombination protein F [Staphylococcus aureus A8115]
 gi|257855049|gb|EEV77992.1| recombination protein F [Staphylococcus aureus A6300]
 gi|257857551|gb|EEV80446.1| recombination protein RecF [Staphylococcus aureus A6224]
 gi|257860893|gb|EEV83710.1| recombination protein F [Staphylococcus aureus A5948]
 gi|257863498|gb|EEV86258.1| recombination protein F [Staphylococcus aureus A5937]
 gi|259160219|gb|EEW45248.1| DNA replication and repair protein [Staphylococcus aureus 930918-3]
 gi|259162433|gb|EEW47003.1| DNA replication and repair protein [Staphylococcus aureus D30]
 gi|262073984|gb|ACY09957.1| recombination protein F [Staphylococcus aureus subsp. aureus ED98]
 gi|269939530|emb|CBI47888.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282314767|gb|EFB45153.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus C101]
 gi|282323018|gb|EFB53337.1| RecF protein [Staphylococcus aureus subsp. aureus M899]
 gi|282323974|gb|EFB54290.1| recombination protein RecF [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326096|gb|EFB56401.1| recombination protein RecF [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329950|gb|EFB59471.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282590514|gb|EFB95592.1| DNA replication and repair protein recF [Staphylococcus aureus
           A10102]
 gi|282594131|gb|EFB99119.1| DNA replication and repair protein recF [Staphylococcus aureus
           A9765]
 gi|282763328|gb|EFC03458.1| DNA replication and repair protein recF [Staphylococcus aureus
           A8117]
 gi|283789080|gb|EFC27907.1| RecF protein [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919217|gb|EFD96293.1| RecF protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291096902|gb|EFE27160.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291465519|gb|EFF08051.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus M809]
 gi|294823380|gb|EFG39809.1| DNA replication and repair protein recF [Staphylococcus aureus
           A9754]
 gi|294968333|gb|EFG44358.1| DNA replication and repair protein recF [Staphylococcus aureus
           A8819]
 gi|295127060|gb|EFG56704.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296885909|gb|EFH24844.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177268|gb|EFH36521.1| DNA replication and repair protein recF [Staphylococcus aureus
           A8796]
 gi|297577708|gb|EFH96421.1| recombination protein F [Staphylococcus aureus subsp. aureus MN8]
 gi|298693326|gb|ADI96548.1| recF protein [Staphylococcus aureus subsp. aureus ED133]
 gi|300887651|gb|EFK82847.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH70]
 gi|302331776|gb|ADL21969.1| DNA repair and genetic recombination protein [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|302749915|gb|ADL64092.1| DNA repair and genetic recombination protein [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304341532|gb|EFM07442.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312436855|gb|ADQ75926.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH60]
 gi|312828567|emb|CBX33409.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129547|gb|EFT85539.1| recombination protein F [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195230|gb|EFU25618.1| recombination protein F [Staphylococcus aureus subsp. aureus CGS00]
 gi|315197922|gb|EFU28255.1| recombination protein F [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141421|gb|EFW33264.1| recombination protein F [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144404|gb|EFW36169.1| recombination protein F [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323439695|gb|EGA97413.1| recombination protein F [Staphylococcus aureus O11]
 gi|323443268|gb|EGB00885.1| recombination protein F [Staphylococcus aureus O46]
 gi|329312727|gb|AEB87140.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725526|gb|EGG62005.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329731646|gb|EGG68006.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 370

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 14/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D  +      +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRIS 368
           +   AK  RI+
Sbjct: 354 IMNNAKLYRIN 364


>gi|167031026|ref|YP_001666257.1| recombination protein F [Pseudomonas putida GB-1]
 gi|189039633|sp|B0KEV1|RECF_PSEPG RecName: Full=DNA replication and repair protein recF
 gi|166857514|gb|ABY95921.1| DNA replication and repair protein RecF [Pseudomonas putida GB-1]
          Length = 367

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 163/353 (46%), Gaps = 16/353 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L+   +  I  G NG GKT++LEA+  L   R FR +    V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSSRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   P+  + F  VE  EG    + +  E + + ++R   I+    R   +L + L + 
Sbjct: 61  IQYEQPAC-TVFGEVELTEGGTCKLGVSRERQGEFTIR---IDGQNARSAAQLAELLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL   + E    E      L+L+ +     D+    L
Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKP-VFERTLSELVELDGLTLSYYRGWDKDRE---L 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLA 302
           +E  A  L   ++M      T  GP R+DL +    + A  I   S G+QK+V+  + +A
Sbjct: 233 QEVLASSLLRDQQMGH----TQAGPQRADLRLRLAGNNAADIL--SRGQQKLVVCALRIA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
              L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  + 
Sbjct: 287 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELL 339


>gi|302388603|ref|YP_003824424.1| DNA replication and repair protein RecF [Thermosediminibacter
           oceani DSM 16646]
 gi|302199231|gb|ADL06801.1| DNA replication and repair protein RecF [Thermosediminibacter
           oceani DSM 16646]
          Length = 367

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 160/352 (45%), Gaps = 25/352 (7%)

Query: 14  EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73
           +FRN+    + F     +  GDNG GKTN+LEAI FL   R  R     DV      ++ 
Sbjct: 10  DFRNFREAEVEFSGGLNVLYGDNGQGKTNLLEAIHFLCNLRPVRTTREQDVI-----AWD 64

Query: 74  STFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            T A ++G+     G  D  + L   D + VR   +       + EL   +   +  P  
Sbjct: 65  KTKAYLKGVFDTSSGPVDRELLLVAGDRKKVRECGVER---HRLSELYWQIHAVFFSPDD 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA- 188
             +  G   ERRRFLD ++  + P++ R + ++ R +  RNRLL +   + +  ++++A 
Sbjct: 122 LSLVKGRPSERRRFLDLIIARLKPQYGRYLSEYNRALFHRNRLLKDLKKNRTLITALDAW 181

Query: 189 --QMAELGVKINIARVEMINALSSLIMEYV----QKENFPHIKLSLTGFLDGKFDQSFCA 242
             Q++ LG  I   R      L  L+ +Y     ++E    IK + +    G   +S   
Sbjct: 182 DEQLSSLGTVILKTRAAFTEKLFPLVRKYYLYFSREEREIEIKYAGSIVSTGTSPES--- 238

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           + E +   L      D  S  T +GPHR DL      + +    GS GEQ+ + + +  A
Sbjct: 239 IHEAFLAALRKSLPQDLASGYTRVGPHRDDLQFLLGGRDLRY-FGSQGEQRTLSLSLKFA 297

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
             R+   TTG  PILLLD+  + LD ++R  +  +  +   Q+F+T  D S 
Sbjct: 298 ERRVFFETTGVYPILLLDDAMSELDANRRRWI--LEGEEPCQVFVTTVDLSA 347


>gi|325698042|gb|EGD39923.1| recombination protein F [Streptococcus sanguinis SK160]
          Length = 364

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 164/372 (44%), Gaps = 16/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+  
Sbjct: 3   LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F      V G+       + L+       R  ++N +    + +    + +    
Sbjct: 63  -----FTENELVVSGILEKKTSKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+ E G ++   R++ +  L S   +  +   +N   + +    +L         +L
Sbjct: 178 LDDQLVEYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVK---YLSSIPLHQIDSL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D  + +    +    GS G+ + +++ + LA 
Sbjct: 235 EETYCSSLLSNRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362
            +LI + T   PILLLD++ + LD +++  L   ++ DI  Q F+T T      +L +  
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350

Query: 363 KFMRISNHQALC 374
           K   I   Q + 
Sbjct: 351 KIFTIQQGQIIS 362


>gi|170755060|ref|YP_001779630.1| recombination protein F [Clostridium botulinum B1 str. Okra]
 gi|226737780|sp|B1IDU6|RECF_CLOBK RecName: Full=DNA replication and repair protein recF
 gi|169120272|gb|ACA44108.1| DNA replication and repair protein RecF [Clostridium botulinum B1
           str. Okra]
          Length = 364

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 168/362 (46%), Gaps = 39/362 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+ +
Sbjct: 3   IKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              + ++  T+   E ++   DI+I    +     + + +N + I+ + EL  +L +   
Sbjct: 63  WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +W + 
Sbjct: 118 SPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNK 171

Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230
           I       + Q+++ G  I   R + ++ L ++I + + K+        NF +    LT 
Sbjct: 172 INDIIDIYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D  FD +    ++E    L   RK D     T IGPHR D  V   +   T   GS G
Sbjct: 227 IKD--FDNT----EKELLIVLKKNRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ +  A   +I N  G  P+LLLD++ + LD +++  +   +  I + I  TG 
Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKIQTIITCTGI 339

Query: 351 DK 352
           ++
Sbjct: 340 EE 341


>gi|89898370|ref|YP_515480.1| recombination protein F [Chlamydophila felis Fe/C-56]
 gi|123483260|sp|Q254F3|RECF_CHLFF RecName: Full=DNA replication and repair protein recF
 gi|89331742|dbj|BAE81335.1| DNA replication and repair protein [Chlamydophila felis Fe/C-56]
          Length = 367

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 150/342 (43%), Gaps = 11/342 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRNY   ++          G+N  GKTN+LEA+  LS GR FR +   +    GS
Sbjct: 6   LRLKNFRNYKEAKISLSPNMNYIFGENAQGKTNLLEALYVLSLGRSFRTSHLTEAISFGS 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             FF     +E        S KL    D+  + +  +   I+ + +L   + I  L  S 
Sbjct: 66  AYFF-----LEMTCEKDGFSHKLSIYVDKHGKKILSDQSPIKTLSQLIGMVPIV-LFSSK 119

Query: 130 DRIF-SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
           DR+  SG   +RR FL+ ++   DP+++  +  + R +  RN LL       S  S  + 
Sbjct: 120 DRLLISGSPSDRRLFLNLLLSQCDPQYKHTLSYYHRALLQRNSLLKTKQI--STLSVWDE 177

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           Q+A LG  + ++R      L+ L+ +        HI++     L  +   S  ++ EE  
Sbjct: 178 QLATLGAYLTLSRFTCCEQLNQLVQKLWNNSLSEHIRIKFKSSLIKQDKLSKESIIEELR 237

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           K+L      D     T +GPHR D  +   D  ++    S G++  +L  + LA    I 
Sbjct: 238 KQLTSSLHRDLELGSTSVGPHREDFTLMINDLPVS-QFSSEGQKHSLLAILRLAECLYIK 296

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           N     P+  +D+I + LD  + + L  +   +G Q  MT T
Sbjct: 297 NIHNVCPLFCMDDIHSGLDNHRISQLLDLAPTLG-QTLMTST 337


>gi|187777364|ref|ZP_02993837.1| hypothetical protein CLOSPO_00920 [Clostridium sporogenes ATCC
           15579]
 gi|187774292|gb|EDU38094.1| hypothetical protein CLOSPO_00920 [Clostridium sporogenes ATCC
           15579]
          Length = 364

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 168/362 (46%), Gaps = 39/362 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+ +
Sbjct: 3   IKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              + ++  T+   E ++   DI+I    +     + + +N + I+ + EL  +L +   
Sbjct: 63  WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +W + 
Sbjct: 118 SPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNK 171

Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230
           I       + Q+++ G  I   R + ++ L ++I + + K+        NF +    LT 
Sbjct: 172 INDIIDIYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D  FD +    ++E    L   RK D     T IGPHR D  V   +   T   GS G
Sbjct: 227 IKD--FDNA----EKELLIALKKNRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ +  A   +I N  G  P+LLLD++ + LD +++  +   +  I + I  TG 
Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQRFVLNSIDKIQTIITCTGI 339

Query: 351 DK 352
           ++
Sbjct: 340 EE 341


>gi|238926600|ref|ZP_04658360.1| possible recombination protein RecF [Selenomonas flueggei ATCC
           43531]
 gi|238885546|gb|EEQ49184.1| possible recombination protein RecF [Selenomonas flueggei ATCC
           43531]
          Length = 377

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 161/371 (43%), Gaps = 34/371 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  +R+Y +L L FD    IF+G N  GKTNI+EA+ + + GR  R +S A++
Sbjct: 1   MQITELTLRSYRSYETLHLAFDPGVQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+                A I++     D              R ++   + LR   
Sbjct: 61  IRVGADG--------------AHIALSFRRHDVPGALSFTFARGARRRIEYAGESLRQRD 106

Query: 125 LV---------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT- 174
           LV         P    +  G    RRR+LD  +    P +   ++ + R+++ RN +L  
Sbjct: 107 LVGILPMVLFSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTRILKQRNAVLKD 166

Query: 175 --EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             E           +AQ+A+    I   R   +  L +L    VQ       +L+L   +
Sbjct: 167 IRERLAAPDDLLPWDAQLAKSAAYIVTRRTSAVAQLGALSAR-VQSVLAAGEELTLVYDI 225

Query: 233 DGKFDQSFCA--LKEE----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
            G   +S     + E+    Y K L +GR  D     T +GPH  DL++      +  + 
Sbjct: 226 AGAAPESGAKDDMTEQLYLWYNKMLREGRARDIARAATGVGPHLDDLVLRVGGMNLR-SF 284

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           GS G+Q+   + + LA    +    G APILLLD++ + LD D+R AL   +     Q F
Sbjct: 285 GSQGQQRTGALALKLAELFYLQENVGEAPILLLDDVMSELDADRRRALLDFIRHENIQTF 344

Query: 347 MTGTDKSVFDS 357
           +T TD + F +
Sbjct: 345 ITATDAAYFPA 355


>gi|104779319|ref|YP_605817.1| recombination protein F [Pseudomonas entomophila L48]
 gi|122985999|sp|Q1IH46|RECF_PSEE4 RecName: Full=DNA replication and repair protein recF
 gi|95108306|emb|CAK13000.1| DNA replication, recombinaison and repair protein [Pseudomonas
           entomophila L48]
          Length = 367

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 162/349 (46%), Gaps = 16/349 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L+++  RN   + L    +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRLSVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F +VE  EG  +++ +  E + + ++R   I+    R   +L + L + 
Sbjct: 61  IQYEQQTC-TVFGQVELAEGGTSNLGVSRERQGEFTIR---IDGQNARSAAQLAEMLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D+   
Sbjct: 117 LINPDSFRLLEGAPKVRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAVSQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL   + E    E      L+L+ +     D+    L
Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKP-VFERTLSELVELDGLTLSYYRGWDKDRE---L 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLA 302
            E  A  L   ++M      T  GP R+DL +    + A  I   S G+QK+V+  + +A
Sbjct: 233 NEVLATSLLRDQQMGH----TQAGPQRADLRLRLGANNAADIL--SRGQQKLVVCALRIA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
              L+S       I L+D++ + LDE  R AL R++ ++  Q+F+T  D
Sbjct: 287 QGHLVSQVRRGQCIYLVDDLPSELDEQHRRALCRLLEELNCQVFITCVD 335


>gi|170016362|ref|YP_001727281.1| recombinational DNA repair ATPase (RecF pathway) [Leuconostoc
           citreum KM20]
 gi|226737812|sp|B1MW32|RECF_LEUCK RecName: Full=DNA replication and repair protein recF
 gi|169803219|gb|ACA81837.1| Recombinational DNA repair ATPase (RecF pathway) [Leuconostoc
           citreum KM20]
          Length = 378

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 164/354 (46%), Gaps = 19/354 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNYA+L L F     +F+G+N  GKTN+LE+I  L+  R  R +S  D+
Sbjct: 1   MELTSLKLVNYRNYANLELDFSPGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +    +   R++       +S+   ++  ++    ++N +    + +    L +  
Sbjct: 61  INWTAKE-TTISGRIKKNISETPLSLHFSSKGKKA----RVNHLEQSKLSQYVGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180
             P    +  G    RRRF+D     ++P +   +  + R+++ RN    RL  +   D+
Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNITQYRRILKDRNAYLKRLQLKQTKDT 175

Query: 181 SWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            +   +  Q+  +G ++ +AR   V  + A +  I   V  +    + L     +D +  
Sbjct: 176 VFLDVLTDQLVSVGAEVILARQLFVRRLQAAAQPIHAEVSNQR-EQLTLVYQTSIDFEEH 234

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVV 295
                +K  +A  L   R  + M   T++GPHR DL  IV+  D A+    GS G+Q+  
Sbjct: 235 ADLEQIKATFAATLNRQRTREVMQGSTVVGPHRDDLQFIVNENDVAV---FGSQGQQRTT 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
            + I LA   L++  TG  PILLLD++ + LD  ++  L   + D   Q F+T 
Sbjct: 292 ALAIKLAEIDLMAQETGEYPILLLDDVLSELDASRQTHLLLAIQD-KVQTFITA 344


>gi|325689344|gb|EGD31350.1| recombination protein F [Streptococcus sanguinis SK115]
          Length = 364

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 164/372 (44%), Gaps = 16/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+  
Sbjct: 3   LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   +   +E   G   + I L  +     R  ++N +    + +    + +    
Sbjct: 63  FTENDLLVS-GLLEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNTYLKANDKVDETFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+ + G ++   R++ +  L S   +  +   +N   + +    +L          L
Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVK---YLSSIPLHQIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D  + +    +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362
            +LI + T   PILLLD++ + LD +++  L   ++ DI  Q F+T T      +L +  
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350

Query: 363 KFMRISNHQALC 374
           K   I   Q + 
Sbjct: 351 KIFTIQQGQIMS 362


>gi|283469233|emb|CAQ48444.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 370

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 14/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKETLSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D  +      +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSIDGIDHE 353

Query: 358 LNETAKFMRIS 368
           +   AK  RI+
Sbjct: 354 IMNNAKLYRIN 364


>gi|302559663|ref|ZP_07312005.1| RecF protein [Streptomyces griseoflavus Tu4000]
 gi|302477281|gb|EFL40374.1| RecF protein [Streptomyces griseoflavus Tu4000]
          Length = 373

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 160/361 (44%), Gaps = 27/361 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y  + +      T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYPRVEVPLGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGA---DRAIVRAQVRQGERQQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALIKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP---HIKLSLT 229
              D S     +  +A  G ++   R+++I AL  L     E +     P     K S  
Sbjct: 177 RTLDLSTLDVWDQHLAHAGAELLARRLDLIGALQPLADKAYEQLAPGGGPLTLEYKPSAP 236

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           G  D + D     L E+    L + RK +     TL+GPHR DL++    +     + S 
Sbjct: 237 GEADTRED-----LFEQLMAALAEARKQEIERGVTLVGPHRDDLLLK-LGRLPAKGYASH 290

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T 
Sbjct: 291 GESWSYALALRLASYDLL-RAEGNEPVLVLDDVFAELDTRRRERLAELVAP-GEQVLVTA 348

Query: 350 T 350
            
Sbjct: 349 A 349


>gi|269118645|ref|YP_003306822.1| DNA replication and repair protein RecF [Sebaldella termitidis ATCC
           33386]
 gi|268612523|gb|ACZ06891.1| DNA replication and repair protein RecF [Sebaldella termitidis ATCC
           33386]
          Length = 362

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 168/353 (47%), Gaps = 15/353 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L+++ FR   + ++ FD    +  G NG GKT+++EA+ FL+ G+ FR     ++
Sbjct: 1   MKLKQLSLNNFRCLENKKIEFDPDFNLIYGKNGQGKTSLIEAVYFLATGKSFRTKKVKEL 60

Query: 65  T---RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           T   +I +  + S  +++ G       +I ++  +D+    +  N    + +D +   L 
Sbjct: 61  TSYDKIRTIVYGSFESKLSGK------TIAIDFNNDKKEYYVDKNKT--KYIDYVG-ILN 111

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           +   +P    I  G    RR F +  +      + + ++DFE++++ RN+L+ E   +  
Sbjct: 112 VISFIPEDIEIIIGNPSVRRGFFNYEISQTKNIYLKTLVDFEKILKTRNKLIKERKTNKE 171

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQS 239
                  +  E G KI + R E +  +S L+    +K  +    ++L    F+D     +
Sbjct: 172 LYHIYNEKFIEEGSKIILMRKEYVKNISRLLNLNYRKLFDANSELRLKYDSFIDNIDKMT 231

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +KE++ ++       +     TL+GP + D + +   K    A  S GE+K ++  +
Sbjct: 232 LEEIKEKFREETVKKHDREKRYGYTLVGPQKEDFVFELNGKNAK-AFSSQGEKKSIIFSL 290

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            +A   ++       P+ L+D+IS++ DE ++N++     +   Q F+T T+K
Sbjct: 291 KIAEIDMLIKEKNEIPVFLIDDISSYFDEIRKNSILNYFKNKNIQCFITSTEK 343


>gi|300780156|ref|ZP_07090012.1| recombination protein F [Corynebacterium genitalium ATCC 33030]
 gi|300534266|gb|EFK55325.1| recombination protein F [Corynebacterium genitalium ATCC 33030]
          Length = 392

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 170/378 (44%), Gaps = 32/378 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++ +FR++  L L  +   T+F G NG GKTNI+EA  + +     R +    + R
Sbjct: 3   LRELDLRDFRSWPELNLALEPGVTVFSGRNGHGKTNIVEAAIYTATLASHRVSQDQPLIR 62

Query: 67  IGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+ +   +   V  G E    + IK+     R     QIN   ++   E+   LR    
Sbjct: 63  TGANNARISATTVNAGRELTTHLLIKV-----REQNQAQINRTRLKSPREMLGVLRTVVF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178
            P    + +G   ERRRFLD +     PR      D+++++R RN LL         GY 
Sbjct: 118 APEDLALVTGEPAERRRFLDTLASIRTPRFGGAKADYDKVLRQRNALLRSSNMALRRGYN 177

Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLI---MEYVQKENFP-HIKLSL 228
           D S  +++      +AQ+A  G ++   R  +I+ LS  +      V  E+ P  I+ S 
Sbjct: 178 DDSGAAALSTLDAWDAQLAAFGAQVVAGRRMLIDVLSDPVHNSYSSVAPESRPAAIEYSS 237

Query: 229 T-----GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAI 282
           T       L G+       L+  + ++L   R+ D + R  TL+GPHR DL++   D+  
Sbjct: 238 TLDKAVAELAGEPSNDPAILEAAFLQELAR-RRRDEIDRGTTLVGPHRDDLLLTLGDQPA 296

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              + S GE     + + LA   L+S   G  P+L+LD++ A LD  +R  L  +     
Sbjct: 297 K-GYASHGETWSFALALHLAEYALLSE-DGVDPVLILDDVFAELDAKRRERLVAVAQQAE 354

Query: 343 SQIFMTGTDKSVFDSLNE 360
             +        + D+L+E
Sbjct: 355 QVLITAAVGDDLPDNLDE 372


>gi|149375633|ref|ZP_01893402.1| recombination protein F [Marinobacter algicola DG893]
 gi|149360035|gb|EDM48490.1| recombination protein F [Marinobacter algicola DG893]
          Length = 379

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 163/358 (45%), Gaps = 18/358 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L    FRN +   + F     +  G NG GKT++LEAI +L  GR FR + +  V   G 
Sbjct: 6   LQSENFRNLSPAPVSFSPSINLLYGANGSGKTSVLEAIGYLGLGRSFRVSRHQAVVSHGQ 65

Query: 70  PSFFSTFARVEGMEGL------ADISIKLETRDDRSVR--CLQINDVVIRVVDELNKHLR 121
                     +GM G        +++ ++    D + +   L+++   +R +  L +HL 
Sbjct: 66  HKLTVFGGLDQGMSGAEQKPSSGELNHRVGISRDVTAKETTLRVDGEAVRNLSSLARHLP 125

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           +S + P +  I +G   +RR+FLD  VF ++P         +R+   RN++L  G  D +
Sbjct: 126 VSVIDPGVFDIVAGGPGKRRQFLDWAVFHVEPSFASVWQQCQRVTSQRNQILRNGRIDDA 185

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK-LSLTGFLDGKFDQSF 240
                ++Q  EL  ++  AR E     +      + + + P +  L L  ++     QS 
Sbjct: 186 LMKVWDSQYTELAERLTQARNETFRLFTKAFHSLLGEIDAPWVDGLKLDYYVGWDASQSL 245

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +       L   R+ +     TL GP+R+D+ + Y  + +     S G+QK +++ + 
Sbjct: 246 VEV-------LRSHREQEQKMGHTLYGPNRADIRLRYQGRPVAETF-SRGQQKTLVILMK 297

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           +A   ++S+  G     LLD+I+A LD   R  L + + ++  Q+F+T  +    D L
Sbjct: 298 IAQGMVLSD-LGKQVTFLLDDINAELDVVHRAMLAQKLHELRCQVFVTSIEAPRPDEL 354


>gi|168183730|ref|ZP_02618394.1| DNA replication and repair protein RecF [Clostridium botulinum Bf]
 gi|237793324|ref|YP_002860876.1| recombination protein F [Clostridium botulinum Ba4 str. 657]
 gi|259563360|sp|C3KXR0|RECF_CLOB6 RecName: Full=DNA replication and repair protein recF
 gi|182673206|gb|EDT85167.1| DNA replication and repair protein RecF [Clostridium botulinum Bf]
 gi|229261280|gb|ACQ52313.1| DNA replication and repair protein RecF [Clostridium botulinum Ba4
           str. 657]
          Length = 364

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 167/362 (46%), Gaps = 39/362 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+ +
Sbjct: 3   IKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              + ++  T+   E ++   DI+I    +     + + +N + I+ + EL  +L +   
Sbjct: 63  WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +W + 
Sbjct: 118 SPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNK 171

Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230
           I       + Q+++ G  I   R + ++ L ++I + + K+        NF +    LT 
Sbjct: 172 INDIIDIYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D  FD +   L   + K     RK D     T IGPHR D  V   +   T   GS G
Sbjct: 227 IKD--FDNAEKELLMFFKK----NRKKDFERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ +  A   +I N  G  P+LLLD++ + LD +++  +   +  I + I  TG 
Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKIQTIITCTGI 339

Query: 351 DK 352
           ++
Sbjct: 340 EE 341


>gi|153933867|ref|YP_001382414.1| recombination protein F [Clostridium botulinum A str. ATCC 19397]
 gi|153935303|ref|YP_001385966.1| recombination protein F [Clostridium botulinum A str. Hall]
 gi|168181119|ref|ZP_02615783.1| DNA replication and repair protein RecF [Clostridium botulinum NCTC
           2916]
 gi|226947226|ref|YP_002802317.1| DNA replication and repair protein RecF [Clostridium botulinum A2
           str. Kyoto]
 gi|166220704|sp|A7FPF3|RECF_CLOB1 RecName: Full=DNA replication and repair protein recF
 gi|254790469|sp|C1FPH6|RECF_CLOBJ RecName: Full=DNA replication and repair protein recF
 gi|152929911|gb|ABS35411.1| DNA replication and repair protein RecF [Clostridium botulinum A
           str. ATCC 19397]
 gi|152931217|gb|ABS36716.1| DNA replication and repair protein RecF [Clostridium botulinum A
           str. Hall]
 gi|182668165|gb|EDT80144.1| DNA replication and repair protein RecF [Clostridium botulinum NCTC
           2916]
 gi|226842327|gb|ACO84993.1| DNA replication and repair protein RecF [Clostridium botulinum A2
           str. Kyoto]
          Length = 364

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 168/362 (46%), Gaps = 39/362 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+ +
Sbjct: 3   IKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              + ++  T+   E ++   DI+I    +     + + +N + I+ + EL  +L +   
Sbjct: 63  WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +W + 
Sbjct: 118 SPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNK 171

Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230
           I       + Q+++ G  I   R + ++ L ++I + + K+        NF +    LT 
Sbjct: 172 INDIIDIYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D  FD +    ++E    L   RK D     T IGPHR D  V   +   T   GS G
Sbjct: 227 IKD--FDNA----EKELLIVLKKNRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ +  A   +I N  G  P+LLLD++ + LD +++  +   +  I + I  TG 
Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKIQTIITCTGI 339

Query: 351 DK 352
           ++
Sbjct: 340 EE 341


>gi|322804282|emb|CBZ01832.1| DNA recombination and repair protein RecF [Clostridium botulinum
           H04402 065]
          Length = 364

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 167/362 (46%), Gaps = 39/362 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+ +
Sbjct: 3   IKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              + ++  T+   E ++   DI+I    +     + + +N + I+ + EL  +L +   
Sbjct: 63  WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +W + 
Sbjct: 118 SPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNK 171

Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230
           I       + Q+++ G  I   R + ++ L ++I + + K+        NF +    LT 
Sbjct: 172 INDIIDVYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D  FD +   L   + K     RK D     T IGPHR D  V   +   T   GS G
Sbjct: 227 IKD--FDNAEKELLMLFKK----NRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ +  A   +I N  G  P+LLLD++ + LD +++  +   +  I + I  TG 
Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKIQTIITCTGI 339

Query: 351 DK 352
           ++
Sbjct: 340 EE 341


>gi|210624033|ref|ZP_03294150.1| hypothetical protein CLOHIR_02102 [Clostridium hiranonis DSM 13275]
 gi|210153240|gb|EEA84246.1| hypothetical protein CLOHIR_02102 [Clostridium hiranonis DSM 13275]
          Length = 368

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 177/370 (47%), Gaps = 24/370 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY  L + F+ +  + +G NG GKTNI E+I  L+ G+ FR     ++
Sbjct: 1   MKLKNLQLVNYRNYDKLYIEFNDRINLLLGSNGQGKTNIAESIYLLAFGKSFRTNRDREL 60

Query: 65  TRIGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +  + + +        G  G+ +I+I       ++ + +++N + I  + EL  ++ + 
Sbjct: 61  IKFNTENLYVGGGYEKNGRNGMVEIAIS------KAKKGIKVNKIPIVKLAELLGNINVV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   R+       RR F+DR +  I P +   +  + +++  RN+LL     D +  
Sbjct: 115 IFSPEDLRLVKDGPKIRRSFIDREISQIVPGYYGLLTGYNKILANRNKLLKNMNPDLNLL 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFDQ 238
              +  +A+ G KI + R + I  ++ +  +        KE+   I  S     D     
Sbjct: 175 DVYDESLADYGSKIFMFRKKFIERIAEISKDMHARLTDNKEDLNVIYKSQIQINDE---- 230

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
              ++K+++   L D RK D   R +  G H+ D+++      + + +GS G+Q+   + 
Sbjct: 231 --SSVKDKFINILKDKRKHDLDMRISGYGIHKDDILIQINGLDVRL-YGSQGQQRTASIS 287

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD---KSVF 355
           + L+   LI+   G  P+L+LD++ + LDE ++  L   + D+  Q+F+T  +   K+V 
Sbjct: 288 LKLSEIELINREVGEYPLLILDDVFSELDEKRQKLLVDNLKDV--QMFITTAEYLHKNVL 345

Query: 356 DSLNETAKFM 365
           D  N T  ++
Sbjct: 346 DMNNTTVFYI 355


>gi|167748046|ref|ZP_02420173.1| hypothetical protein ANACAC_02784 [Anaerostipes caccae DSM 14662]
 gi|167652526|gb|EDR96655.1| hypothetical protein ANACAC_02784 [Anaerostipes caccae DSM 14662]
          Length = 361

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 164/353 (46%), Gaps = 24/353 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  +RNY  L + F +   I  GDN  GKTNILEA+   +  +  R +   ++ R
Sbjct: 3   IQSLELKNYRNYDRLIIEFSSGTNILYGDNAQGKTNILEAVYLGATTKSHRGSKDKEIIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G      +  R+  M+      I +  +  R+ +   I+ + I+   +L   + + +  
Sbjct: 63  FGENE---SHIRIHLMKQDIGHQIDMHLKKSRT-KGAAIDRIPIKRSSDLLGFVPVIFFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    I      ERR+FLD  +  ++  +  ++  + R+M  RN LL +  +      ++
Sbjct: 119 PEDLSIIKNGPSERRKFLDIELSQLEKMYLHQLSSYNRVMAQRNNLLKQLAYQRELLDTL 178

Query: 187 EA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSF 240
           ++   Q+ + G ++   R + I  L+ +I E         I  +LTG  +    K+D S 
Sbjct: 179 DSWDLQLVKYGSEVIRYRQKFIEDLNEIIRE---------IHKNLTGKKEKIVLKYDYSV 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGI 299
               +E+   L   R++D     T  GPHR D  +++    I I   GS G+Q+   + +
Sbjct: 230 NY--DEFLTVLQRKREIDLKYASTGAGPHRDD--IEFLVNGIDIRKFGSQGQQRTAALSL 285

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            LA   L+   TG  PILLLD++ + LD  ++N L   + DI + I  TG ++
Sbjct: 286 KLAQIELVKRQTGETPILLLDDVLSELDSSRKNYLLDSIKDIQTLITCTGLEE 338


>gi|295402120|ref|ZP_06812079.1| DNA replication and repair protein RecF [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109155|ref|YP_003987471.1| DNA replication and repair protein RecF [Geobacillus sp. Y4.1MC1]
 gi|294975803|gb|EFG51422.1| DNA replication and repair protein RecF [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214256|gb|ADP72860.1| DNA replication and repair protein RecF [Geobacillus sp. Y4.1MC1]
          Length = 374

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 169/379 (44%), Gaps = 25/379 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  +RNY S  + F     I +G+N  GKTN++EAI  L+  +  R A+  D+ R   
Sbjct: 6   LSLKNYRNYKSETIQFANNVNIILGENAQGKTNMMEAIYVLAMAKSHRTANDKDLIR--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +   +A++EG       ++ LE   ++  +  +C   N V  + + +   HL I    
Sbjct: 63  --WDEDYAKIEGRATTKSGALSLELIISKKGKKAKC---NHVEQQRLSQYVGHLNIVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RRRF+D  +  + P +   +  +++L++ RN  L    T    D + 
Sbjct: 118 PEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMLQTREQQDETV 177

Query: 183 CSSIEAQMAELGVKINIARVE---MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
              +  Q+  L  KI + R E   ++   ++ I   + +     +++     +D      
Sbjct: 178 LDILTEQLIPLAAKITLKRHEFLLLLEKWAAPIHREISR-GLETLQIQYRPSVDVSERME 236

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              + E Y++K    ++ +     TL GPHR D++     K +    GS G+Q+   + I
Sbjct: 237 LSRIIEAYSEKFATIKEREIQRGMTLAGPHRDDILFSVNGKDVQ-TFGSQGQQRTTALSI 295

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDS 357
            LA   LI +  G  PILLLD++ + LD+ ++  L   +     Q F+T T  D    D 
Sbjct: 296 KLAEIELIFSEIGDYPILLLDDVLSELDDFRQTHLLDAIRQ-KVQTFVTTTSIDGIEHDI 354

Query: 358 LNETAKFMRISNH--QALC 374
           + E A +   S H    LC
Sbjct: 355 IKEAAIYKVHSGHVTAPLC 373


>gi|19551253|ref|NP_599255.1| recombination protein F [Corynebacterium glutamicum ATCC 13032]
 gi|62388896|ref|YP_224298.1| recombination protein F [Corynebacterium glutamicum ATCC 13032]
 gi|51316227|sp|Q6M8X7|RECF_CORGL RecName: Full=DNA replication and repair protein recF
 gi|21322768|dbj|BAB97397.1| Recombinational DNA repair ATPase [Corynebacterium glutamicum ATCC
           13032]
 gi|41324229|emb|CAF18569.1| DNA REPAIR AND GENETIC RECOMBINATION PROTEIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 394

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 176/392 (44%), Gaps = 43/392 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L + ++R++  L++  +   T+F+G NG GKTNI+EAI +L+     R +S A +
Sbjct: 1   MHIRSLELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLSSHRVSSDAPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R  + +   S  A  +G E  A + IK    +  S     +N   +R   EL   ++  
Sbjct: 61  VRAHAENARVSAVAVNQGRELAAHLLIKPHAANQAS-----LNRTKVRTPRELLGVVKTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174
              P    +  G   ERRR+LD ++    PR      D++++++ RN LL          
Sbjct: 116 LFAPEDLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQRNALLKTATIALRRG 175

Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME---YVQKENFPH---- 223
               EG    S   + + Q+A LG ++  AR  ++N L   I E    +  E+ P     
Sbjct: 176 YGTEEGAAALSTLDTWDGQLARLGAEVMAARFALLNELGPKIYEAYTTIAPESRPAAVNY 235

Query: 224 ---IKLSLTGFLDGKFDQSF--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
              I   L+ F   +FD       L  E A K    R+ +     +L+GPHR D+ +   
Sbjct: 236 KTTIDQGLSQF--SEFDAGIIEATLLTELAAK----RQREIERGSSLVGPHRDDVDLMLG 289

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           D+       S GE     + + +A   L+  + G  PIL+LD++ + LD  +R  L  I 
Sbjct: 290 DQPAK-GFASHGETWSFALSLRIAEFNLL-KSDGTDPILILDDVFSELDAGRREKLVGIA 347

Query: 339 TDIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
            ++  Q+ +T    +V D L E  K +  + H
Sbjct: 348 QEV-EQVLITA---AVHDDLPENLKKVLTAQH 375


>gi|262193329|ref|YP_003264538.1| DNA replication and repair protein RecF [Haliangium ochraceum DSM
           14365]
 gi|262076676|gb|ACY12645.1| DNA replication and repair protein RecF [Haliangium ochraceum DSM
           14365]
          Length = 382

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 162/362 (44%), Gaps = 26/362 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +   RN A L L    +  +F GDNG GKTN+LE I  +   R FR    A++  
Sbjct: 3   VRALKLEGIRNLAPLTLTPGPRFNVFHGDNGQGKTNLLETIYVVGALRSFRTQRLAELIA 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 +   AR++   GL  +   ++ +  R VR   ++   +R + +      +    
Sbjct: 63  FERDRAY-IGARIQ-RGGLERVYELVQRQRGRQVR---LDGKAVRPISKYFGDFNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSS---- 181
           P   ++  G   ERRRFLDR VF   PR+   +  ++++++ RN LL E G    S    
Sbjct: 118 PEDLQVPRGSPAERRRFLDRAVFNRSPRYLGEVQAYDKVVKNRNALLRELGSGKRSLRQA 177

Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
             + +  + Q+AELG  +   RV  ++ +     E  Q  +  H  L++        D +
Sbjct: 178 GDFLAVFDQQLAELGALLMRYRVHFLDEIRPRFQEAFQ--SITHTGLAVDVSYASAVDIT 235

Query: 240 FCA-----------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
             +           L    A  + + R  D     + +GPHR DL+ +  D     A  S
Sbjct: 236 QASDSAESGPGSEQLTRALAAAIAERRPRDLARGSSSVGPHRDDLVFE-LDGHPAAAFAS 294

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+ + +++    A  +L+++T G  P+LLLD++S+ LD  +   LF  +     Q F+T
Sbjct: 295 QGQLRALVLAWKTAEMQLLAHTHGEEPVLLLDDVSSELDATRNGYLFEFLKARRGQCFIT 354

Query: 349 GT 350
            T
Sbjct: 355 TT 356


>gi|157959833|ref|YP_001499867.1| recombination protein F [Shewanella pealeana ATCC 700345]
 gi|189039643|sp|A8GYE5|RECF_SHEPA RecName: Full=DNA replication and repair protein recF
 gi|157844833|gb|ABV85332.1| DNA replication and repair protein RecF [Shewanella pealeana ATCC
           700345]
          Length = 360

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/355 (29%), Positives = 167/355 (47%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  FRN +S +L       +  G NG GKT+ILEAI FL  GR FR      V +   
Sbjct: 6   LHIESFRNISSAQLQPGDGLNLIYGHNGSGKTSILEAIYFLGMGRSFRSHLSQRVIK-ND 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA +E  +  + I ++     D  V+   IN   ++ +  L + L I  + P S
Sbjct: 65  DDALTLFANMESGDEQSKIGLRRFRSGDIEVK---INGDKVKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS---WCSS 185
              +F G    RR+F+D   F  DPR     ++  R+++ RN+LL +G   SS   W   
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDPRFYAAWVNVRRILKQRNQLLRDGSPYSSIQFWDKE 180

Query: 186 IEAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
              + AEL   I    V+ +N  L  +I E++ + +   +K+S T   D          K
Sbjct: 181 F-IRYAELVTDIRKQYVDSLNELLKGIIGEFLPQVD---VKVSFTRGWDA---------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L      D  +  T+ GPH++DL +         A  S G+ K+++  + +A  
Sbjct: 228 TEYAQLLETQYPRDLATGYTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL 358
           +L+        I L+D++ + LD   R  L + + D G+Q+F+T  +  ++ DSL
Sbjct: 287 KLLKQQIDKKSIYLVDDLPSELDAKHRKLLLQQLADTGAQVFVTAIEPAAIVDSL 341


>gi|332365084|gb|EGJ42849.1| recombination protein F [Streptococcus sanguinis SK355]
          Length = 364

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 163/372 (43%), Gaps = 16/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+  
Sbjct: 3   LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   +   +E   G   + I L  +     R  ++N +    + +    + +    
Sbjct: 63  FTENELLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHILKQRNAYLKANDKVDETFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+ + G ++   R++ +  L S   +  +   +N   + +    +L          L
Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVK---YLSSIPLHQIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D  + +    +    GS G+ + +++ + LA 
Sbjct: 235 EETYCSSLLSSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362
            +LI + T   PILLLD++ + LD  ++  L   ++ DI  Q F+T T      +L +  
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNKRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350

Query: 363 KFMRISNHQALC 374
           K   I   Q + 
Sbjct: 351 KIFTIQQGQIIS 362


>gi|253730403|ref|ZP_04864568.1| recombination protein F [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725883|gb|EES94612.1| recombination protein F [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 370

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 162/371 (43%), Gaps = 14/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D  +      +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  P+LLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPVLLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRIS 368
           +   AK  RI+
Sbjct: 354 IMNNAKLYRIN 364


>gi|251794040|ref|YP_003008771.1| DNA replication and repair protein RecF [Paenibacillus sp. JDR-2]
 gi|247541666|gb|ACS98684.1| DNA replication and repair protein RecF [Paenibacillus sp. JDR-2]
          Length = 369

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 14/350 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + +  +RNY  L LV D +  +FVG N  GKTN+LEAI  L+  +  R +   D   
Sbjct: 3   LKSIQLQNYRNYKELELVTDNKVNLFVGPNAQGKTNLLEAIFALALTKSHRTSK--DKEL 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           IG   + +  AR+ G       ++KL+       +  +IN +  R + +    L +    
Sbjct: 61  IG---WEADSARIHGEVEKRYGTLKLDLMYSSQGKKAKINGLEQRKLSDFIGSLNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    I  G    RRRFLD  +  + P +   +  + +++  RN  L       S  + +
Sbjct: 118 PEDLEIVKGTPGIRRRFLDMEIGQVQPGYLHTLTQYTKVLAQRNNYLKTATPGGSQQAML 177

Query: 187 E---AQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFDQSF 240
           E    Q+AE GVKI   R   I+ L     E++          + +      DG   +  
Sbjct: 178 EIWNMQLAEHGVKIMKKRKHFIHKLQRW-AEHIHSGITAGGERLTIEYRPSFDGGASEDE 236

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L E++  KL   +  +     +L+GPHR D+      K   + +GS G+Q+   + + 
Sbjct: 237 TVLFEQFMLKLSQVKDQEIRRGMSLVGPHRDDMAFFINGKEAAV-YGSQGQQRTTALSLK 295

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           LA   LI    G  P+LLLD++ + LD++++  L         Q F+T T
Sbjct: 296 LAEIELICEEIGEYPLLLLDDVLSELDQNRQTQLIETFQS-KVQTFITTT 344


>gi|322515803|ref|ZP_08068748.1| recombination protein F [Streptococcus vestibularis ATCC 49124]
 gi|322125765|gb|EFX97083.1| recombination protein F [Streptococcus vestibularis ATCC 49124]
          Length = 366

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 155/344 (45%), Gaps = 14/344 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++I  FRNY    + F     IF+G N  GKTNILEAI FL+  R  R  S  ++ +   
Sbjct: 6   IDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQ--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     ++ G+       + LE       R  ++N +    + +   H+ +    P  
Sbjct: 63  --FQQNTLKLNGIVHRHSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188
            ++  G    RR+F+D  +  I P +   +  +  +++ RN  L +    D ++ S ++ 
Sbjct: 121 LQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQRNAYLKSTDNVDINFLSVLDE 180

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           Q+++ G ++   R+E I  L      +          +K+S    +     ++   ++E 
Sbjct: 181 QLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPL---ENNNGIRES 237

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           +   L    K D   + T IGPHR DL     D  +  + GS G+Q+ +++ + +A   L
Sbjct: 238 FLTTLKQNHKRDIFKKNTGIGPHRDDLTFYIND--MNASFGSQGQQRSLILSLKMAEIAL 295

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           I   TG  PILLLD++ + LD  ++  L   + D   Q FMT T
Sbjct: 296 IKKVTGEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTT 338


>gi|332363594|gb|EGJ41375.1| recombination protein F [Streptococcus sanguinis SK1059]
          Length = 364

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 164/372 (44%), Gaps = 16/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+  
Sbjct: 3   LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   +   +E   G   + I L  +     R  ++N +    + +    + +    
Sbjct: 63  FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNSYLKANDKVDETFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+ + G ++   R++ +  L S   +  +   +N   + +    +L          L
Sbjct: 178 LDEQLVDYGCRVIKHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLHQIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D  + +    +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362
            +LI + T   PILLLD++ + LD +++  L   ++ DI  Q F+T T      +L +  
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350

Query: 363 KFMRISNHQALC 374
           K   I   Q + 
Sbjct: 351 KIFTIQQGQIMS 362


>gi|228478114|ref|ZP_04062725.1| DNA replication and repair protein RecF [Streptococcus salivarius
           SK126]
 gi|228250294|gb|EEK09547.1| DNA replication and repair protein RecF [Streptococcus salivarius
           SK126]
          Length = 366

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 162/363 (44%), Gaps = 14/363 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++I  FRNY    + F     IF+G N  GKTNILEAI FL+  R  R  S  ++ +   
Sbjct: 6   IDIQHFRNYTETSVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQ--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     ++ G+       + LE       R  ++N +    + +   H+ +    P  
Sbjct: 63  --FQQNTLKLNGIVHRHSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188
            ++  G    RR+F+D  +  I P +   +  +  +++ RN  L +    D ++ S ++ 
Sbjct: 121 LQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQRNAYLKSTDNVDINFLSVLDE 180

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           Q+++ G ++   R+E I  L      +          +K+S    +  + ++    ++E 
Sbjct: 181 QLSDFGARVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENNK---VIRES 237

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           +   L    K D   + T +GPHR DL     D  +  + GS G+Q+ +++ + +A   L
Sbjct: 238 FLTTLKQNHKRDIFKKNTGVGPHRDDLTFYIND--MNASFGSQGQQRSLILSLKMAEIAL 295

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           I   TG  PILLLD++ + LD  ++  L   + D   Q FMT T      +L    K   
Sbjct: 296 IKKVTGEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPSDLKTFL 354

Query: 367 ISN 369
           ++N
Sbjct: 355 VNN 357


>gi|227502244|ref|ZP_03932293.1| recombination protein F [Corynebacterium accolens ATCC 49725]
 gi|227077068|gb|EEI15031.1| recombination protein F [Corynebacterium accolens ATCC 49725]
          Length = 396

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 171/376 (45%), Gaps = 29/376 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L++ +FR++  L+L      T+FVG NG GKTNI+EA+ + +     R +  + + R
Sbjct: 3   IRDLDVRDFRSWPELKLELGPGITLFVGRNGFGKTNIVEAVGYTAHLSSHRVSHDSPLVR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+ S   +   V +G E    + I+       +    QIN   +R   EL   ++    
Sbjct: 63  QGAQSARVSLTAVNQGRELTTHLLIQ-----PHAANQAQINRTRLRSPRELLGVVKTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178
            P    +  G    RR +LD ++ +  PR      D++++++ RN LL         GY 
Sbjct: 118 SPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASASLRRGYG 177

Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIKLSL 228
           DS   S++      +AQ+A LG ++  AR+ +++AL   I      +  E+ P H++   
Sbjct: 178 DSDGASALSTLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYAGLAPESRPAHVEYKS 237

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
           T  +D    +   A+      +L   R+ +     +L+GPHR DL++   D+       S
Sbjct: 238 T--IDTSDREVLEAV---MLTELASARQREIERGISLVGPHRDDLVLHLGDQPAK-GFAS 291

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +       +   
Sbjct: 292 HGETWSYAIALRLAEFELLREEGGSDPVLILDDVFAELDAKRRTQLVHLAATAEQVLITA 351

Query: 349 GTDKSVFDSLNETAKF 364
             D+ + D+L    ++
Sbjct: 352 AVDEDLPDNLEPIVRY 367


>gi|312864128|ref|ZP_07724363.1| DNA replication and repair protein RecF [Streptococcus vestibularis
           F0396]
 gi|311100360|gb|EFQ58568.1| DNA replication and repair protein RecF [Streptococcus vestibularis
           F0396]
          Length = 366

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 157/346 (45%), Gaps = 18/346 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++I  FRNY    + F     IF+G N  GKTNILEAI FL+  R  R  S  ++ +   
Sbjct: 6   IDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQ--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     ++ G+       + LE       R  ++N +    + +   H+ +    P  
Sbjct: 63  --FQQNTLKLNGIVHRHSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVILFAPEN 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188
            ++  G    RR+F+D  +  I P +   +  +  +++ RN  L +    D ++ S ++ 
Sbjct: 121 LQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQRNAYLKSTDNVDINFLSVLDE 180

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           Q+++ G ++   R+E I  L      +          +K+S    +  + +     ++E 
Sbjct: 181 QLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENNN---VIRES 237

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           +   L    K D   + T +GPHR DL     D  +  + GS G+Q+ +++ + +A   L
Sbjct: 238 FLTTLKQNHKRDIFKKNTGVGPHRDDLTFYIND--MNASFGSQGQQRSLILSLKMAEIAL 295

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGT 350
           I   TG  PILLLD++ + LD  ++    +++  IG   Q FMT T
Sbjct: 296 IKKVTGEFPILLLDDVMSELDNHRQ---LKLLESIGEEVQTFMTTT 338


>gi|332364154|gb|EGJ41931.1| recombination protein F [Streptococcus sanguinis SK49]
          Length = 364

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 165/372 (44%), Gaps = 16/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+  
Sbjct: 3   LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   +   +E   G   + I L  +     R  ++N +    + +    + +    
Sbjct: 63  FTDNDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVIKQRNAYLKANDKVDETFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+ + G ++   R++ +  L S   +  +   +N   + +    +L     Q    L
Sbjct: 178 LDDQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLQKIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D  + +    +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362
            +LI + T   PILLLD++ + LD +++  L   ++ DI  Q F+T T      +L +  
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350

Query: 363 KFMRISNHQALC 374
           K   I   Q + 
Sbjct: 351 KIFTIQQGQIVS 362


>gi|285815731|gb|ADC36218.1| DNA recombination and repair protein RecF [Staphylococcus aureus
           04-02981]
          Length = 370

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 162/371 (43%), Gaps = 14/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEVLSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D  +      +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRIS 368
           +   AK  RI+
Sbjct: 354 IMNNAKLYRIN 364


>gi|330685260|gb|EGG96921.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           VCU121]
          Length = 371

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 167/379 (44%), Gaps = 29/379 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + +    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEQVTIDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F S +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FDSEYAKIEGDLNYRHGTMPLTMFITKRGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G  + RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPLIRRRFIDMELGQISAVYLNDLSQYQRILKQKNNYLKQLQIGNKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q AE  +K+ + R   I  L  L            E +  +  P +KLS   
Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELEQLAQPIHAGITNEREQLALKYLPSLKLS--- 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                 DQ+   + EE    L D  + +      L GPHR DL  +  +      +GS G
Sbjct: 233 ----HQDQTESEMLEEILTLLNDNLQREKDRGVCLFGPHRDDLGFN-VNGMDAQTYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346

Query: 351 DKSVFD-SLNETAKFMRIS 368
                D  +   AK  RI+
Sbjct: 347 SVDGIDHEIMNNAKLYRIN 365


>gi|212637853|ref|YP_002314373.1| recombination protein F [Anoxybacillus flavithermus WK1]
 gi|212559333|gb|ACJ32388.1| Recombinational DNA repair ATPase RecF [Anoxybacillus flavithermus
           WK1]
          Length = 379

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 156/348 (44%), Gaps = 15/348 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  +RNY      F  +  + +G+N  GKTNI+E+I  LS  +  R  +  D+ R   
Sbjct: 14  LTLKNYRNYEQGCWQFQNKVNVILGENAQGKTNIMESIYVLSMAKSHRTTNDKDLIR--- 70

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             +   +A++EG  G  + SI L+    +  +  ++N +    +     H+ +    P  
Sbjct: 71  --WDEDYAKIEGKVGKKNGSIFLQLTVSKKGKKAKLNHIEQAKLSRYVGHMNVVMFAPED 128

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D  +  + P +   +  ++++++ RN+ L    ++   D ++   
Sbjct: 129 LNLVKGSPQIRRRFIDMEIGQVSPVYMHELGQYQKVLQQRNQYLKLLQSKKQTDETFLDV 188

Query: 186 IEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           +  Q+ EL  KI + R E I  L +    I   + + N   + +     +     Q +  
Sbjct: 189 LTEQLVELAAKITLKRYEFIELLQTWAKPIHAEISRGN-EQLAIHYCPSVHVLDKQQWSR 247

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           + E Y  K    +  +     TLIGPHR DL      K +    GS G+Q+   + + LA
Sbjct: 248 IVEVYNDKFARIKTKEIERGTTLIGPHRDDLSFTINGKDVQ-TFGSQGQQRTTALSLKLA 306

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              LI +  G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 307 EIDLIFSEIGEYPILLLDDVLSELDDFRQTHLLNAIQG-KVQTFVTTT 353


>gi|307710347|ref|ZP_07646788.1| DNA replication and repair protein recF [Streptococcus mitis SK564]
 gi|307618939|gb|EFN98074.1| DNA replication and repair protein recF [Streptococcus mitis SK564]
          Length = 363

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 165/372 (44%), Gaps = 26/372 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--------HIKLSLTGFLDGKFD 237
           ++ Q+   G ++   R++ I  L S    + +K++F          I    +  L  K D
Sbjct: 178 LDDQLVNYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVKLTDKED 233

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                L E +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++
Sbjct: 234 -----LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVL 286

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            I LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +
Sbjct: 287 SIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQN 345

Query: 358 LNETAKFMRISN 369
           L E      I +
Sbjct: 346 LPENLSIFTIQD 357


>gi|262200049|ref|YP_003271257.1| DNA replication and repair protein RecF [Gordonia bronchialis DSM
           43247]
 gi|262083396|gb|ACY19364.1| DNA replication and repair protein RecF [Gordonia bronchialis DSM
           43247]
          Length = 397

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 162/364 (44%), Gaps = 32/364 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++ +FR++ +  L   A+ T+F G NG GKTNILEA+ +L+  R  R ++ A +  
Sbjct: 3   VRELHLRDFRSWRTADLELAAEPTVFTGRNGFGKTNILEALQYLATLRSHRVSTDAPLVH 62

Query: 67  IGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+ S   T A VE  G E  A + I  E  +  S     IN+   R   E+   LR   
Sbjct: 63  SGATSALVT-ATVENSGRELTAQLRINAEGANKAS-----INNGPPRRAREVIGILRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY 177
             P    +  G   +RRRF+D +V    P H     D++R++R R  LL         G 
Sbjct: 117 FAPEDLSLVRGDPTDRRRFIDELVAQRGPLHVAARSDYDRVLRQRAALLKTAGAAMRRGG 176

Query: 178 FDSSWCSSI----EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            D++   S     +AQ+AE G  +  ARV+++N L   + E       PH + +   +L 
Sbjct: 177 GDAASVISTLDVWDAQLAEHGAAVTAARVDVLNELRPHVTE-AYASIAPHSRPTDLAYLP 235

Query: 234 GKFDQ---------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
                            A+ E    +L   R  +      L+GPHR D+ +   D  I  
Sbjct: 236 AAGPDVLPPAGARADVAAIGETLLAQLAQVRTKEIERGVCLVGPHRDDVGIILGDD-IAK 294

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
              S GE   + + + L    L +   G  P+++LD++ A LD  +R  L    +D   Q
Sbjct: 295 GFASHGESWSLALALRLGSVAL-TRAEGVEPVIMLDDVFAELDATRRRKLATFTSD-AEQ 352

Query: 345 IFMT 348
           + +T
Sbjct: 353 LLVT 356


>gi|322377917|ref|ZP_08052405.1| DNA replication and repair protein RecF [Streptococcus sp. M334]
 gi|321281093|gb|EFX58105.1| DNA replication and repair protein RecF [Streptococcus sp. M334]
          Length = 365

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 169/377 (44%), Gaps = 26/377 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ +++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FLS  R  R  +  ++  
Sbjct: 3   LQHISLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLSLTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      S+ LE +  +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSVPLEIKLTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +    D ++ S 
Sbjct: 118 PEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSTQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--------HIKLSLTGFLDGKFD 237
           ++ Q+ + G ++   R++ I  L +    + +K++F          I    +  +  K D
Sbjct: 178 LDEQLVDYGCRVMNHRLDFIKKLEA----FGRKKHFELSNQIEELSISYQSSVKITDKED 233

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                L E +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++
Sbjct: 234 -----LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVL 286

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            I LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +
Sbjct: 287 SIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQN 345

Query: 358 LNETAKFMRISNHQALC 374
           L E      I   Q + 
Sbjct: 346 LPENLSIFTIQGGQVVV 362


>gi|309388285|gb|ADO76165.1| DNA replication and repair protein RecF [Halanaerobium praevalens
           DSM 2228]
          Length = 374

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 164/352 (46%), Gaps = 30/352 (8%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN+  L L  +    IF+G NG GKTN LE+I  ++     R +  +++          
Sbjct: 11  FRNFKELMLDLNPNLNIFLGANGQGKTNFLESIYLMATANSHRSSISSEMINWQQNKSLV 70

Query: 75  TFA--RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
                R EG        IKL  R +++ + ++IND  +  V EL  +L      P   ++
Sbjct: 71  QLLLRRREG-------KIKLAMRLEKNNKQVEINDNPLDKVKELFGYLNAVLFSPEDLKL 123

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSSWCSSI-EA 188
                  RR F+D  +  + P +   +  ++ L+  RN+LL    EG   +     + + 
Sbjct: 124 IKEGPSHRREFIDLEISQVSPYYNHLLSKYDHLLSQRNKLLKSIREGKSKNREMLPVWDE 183

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           Q+A +G KI + R+E+IN L   I+  + +      + +L    D   +     + E   
Sbjct: 184 QLATIGTKIILKRIEVINKLK--ILARLSQRKITEGRENLELEYDTSLNHFSPKMGEAEL 241

Query: 249 KKLFDGRKMDSM-SRR--------TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           + LF    +DS+ S+R        T+IGPHR D+I+   +  +   +GS G+Q+   + +
Sbjct: 242 RNLF----IDSLISKRDQEISRGYTVIGPHRDDIILRVNEMNLR-KYGSQGQQRTAALAL 296

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            LA    + + TG  P+LLLD++ + LD  +R AL  I+ D   Q  +T TD
Sbjct: 297 KLAELEFMKSETGEYPVLLLDDVFSELDGLRRKALINIIAD-KIQTIITATD 347


>gi|77407728|ref|ZP_00784483.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           COH1]
 gi|77173727|gb|EAO76841.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           COH1]
          Length = 369

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 165/366 (45%), Gaps = 14/366 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +++  +RNY   ++ F     IF+G N  GKTN LEAI FL+  R  R  S  ++  
Sbjct: 3   IKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKELVH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   T   V    G  ++ I+L  +     R  ++N +    + +    + +    
Sbjct: 63  FKHHDVQIT-GEVIRKSGHLNLDIQLSEKG----RITKVNHLKQAKLSDYIGAMTVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+FLD  +  I   +   + ++  +++ RN  L T    D ++ + 
Sbjct: 118 PEDLQLVKGAPSLRRKFLDIDIGQIKSTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+A+ G ++   R + I AL+       Y+      H+ +     ++   D+S  ++
Sbjct: 178 LDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFT-DKS--SI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +  +L      D   + T IGPHR D+     D  I    GS G+Q+ +++ + LA 
Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFGSQGQQRSLILSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   T   PILLLD++ + LD  ++  L   + +   Q F+T T      +L +  K
Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351

Query: 364 FMRISN 369
              +S+
Sbjct: 352 IFNVSD 357


>gi|332654822|ref|ZP_08420564.1| DNA replication and repair protein RecF [Ruminococcaceae bacterium
           D16]
 gi|332516165|gb|EGJ45773.1| DNA replication and repair protein RecF [Ruminococcaceae bacterium
           D16]
          Length = 372

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 166/377 (44%), Gaps = 33/377 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  FRNYA +   F  +  +  GDN  GKTN+LEAI++LS  R  R     ++
Sbjct: 1   MKLNRLELDFFRNYAHVEATFHPRVNLIYGDNAQGKTNLLEAIAYLSSARSHRARYDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123
             +  P  +     ++G     + +  LE +  R   R L  N + ++   EL   L   
Sbjct: 61  IMLNEPQGY-----IKGEVDSRERTFILEAKLCRGKTRQLWSNGLRLKTAGELAGILTTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    +    +  RRRFLD  +  + PR+ + + ++ RL   + R+L +   + S  
Sbjct: 116 LFCPEDLYLIREGAAARRRFLDGAICQLRPRYAQALAEYNRLYEHKTRILRDWQENPSLL 175

Query: 184 SSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQ 238
            +++    +MA+ G +I   R   +  L          E  P I    +G  +  G   +
Sbjct: 176 DTLDDFNLRMAQFGARIIHYRAHFVRRLG---------EQAPAIHADFSGGREQLGLRYE 226

Query: 239 SFCALKEEYA--KKLFDG--------RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
           +   +++     + +F+         R+ +  SR+ L GPH+ DL+V+  D       GS
Sbjct: 227 TVSTVQDPLGSVQDIFESLMRHQESHRRAELDSRQCLSGPHKDDLVVE-LDGQSAKQFGS 285

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+ +   + + LA   +    TG  P+LLLD++ + LD  +++ +   +   G Q+F+T
Sbjct: 286 QGQTRTAALSLKLAQREIFQQETGEWPVLLLDDVLSELDGKRQSFVLNRIQ--GGQVFIT 343

Query: 349 GTDKSVFDSLNETAKFM 365
             +    D L     F 
Sbjct: 344 CCEPEKLDGLERGKSFQ 360


>gi|329732499|gb|EGG68849.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 370

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 162/371 (43%), Gaps = 14/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG       ++ L     +  + +++N +    + +   H+ +  
Sbjct: 61  IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHINVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D  +      +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRIS 368
           +   AK  RI+
Sbjct: 354 IMNNAKLYRIN 364


>gi|312142412|ref|YP_003993858.1| DNA replication and repair protein RecF [Halanaerobium sp.
           'sapolanicus']
 gi|311903063|gb|ADQ13504.1| DNA replication and repair protein RecF [Halanaerobium sp.
           'sapolanicus']
          Length = 373

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 168/348 (48%), Gaps = 22/348 (6%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN+  + L  ++   IF+GDNG GKTN+LEAI  ++     R +  +++          
Sbjct: 11  FRNFDEIILDLNSNLNIFLGDNGQGKTNLLEAIYIMATTNSHRSSVCSELINWKKEEALI 70

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
               +E  EG    +IKL  R D+  R +++ND  +  V E+  +L      P   ++  
Sbjct: 71  QLL-LERREG----NIKLAMRLDKGGRRVELNDNPLDKVKEMVGYLNAVLFSPEDLKLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSSWCSSI-EAQM 190
                RR F++  +  +   +   +  ++ +++ RN LL    +G   S    SI + Q+
Sbjct: 126 EGPSHRREFINLEISQVSRYYNHLLSKYDHILKQRNNLLKSIRDGKKSSENMLSIWDEQL 185

Query: 191 AELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + +G KI + R+E+++ L  L       I E  ++    +  +SL GF +   +     L
Sbjct: 186 STIGAKIILKRIEVVDKLKILARLSQRQITEGKEELEIEY-DISLDGFSEKMGEAELRGL 244

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              + K L + R+ +     T+IGPHR DLI+   +  +   +GS G+Q+   + + LA 
Sbjct: 245 ---FNKNLKEKREQEINRGYTVIGPHRDDLILKINEMDLR-KYGSQGQQRTAALALKLAE 300

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
              + + TG  P+LLLD++ + LD  +R AL  I+ +   Q  +T TD
Sbjct: 301 LEFMKSETGEYPVLLLDDVFSELDSLRRKALINIIAN-KIQTIITATD 347


>gi|126172260|ref|YP_001048409.1| recombination protein F [Shewanella baltica OS155]
 gi|160873129|ref|YP_001552445.1| recombination protein F [Shewanella baltica OS195]
 gi|166221862|sp|A3CYH7|RECF_SHEB5 RecName: Full=DNA replication and repair protein recF
 gi|189039641|sp|A9KU74|RECF_SHEB9 RecName: Full=DNA replication and repair protein recF
 gi|125995465|gb|ABN59540.1| DNA replication and repair protein RecF [Shewanella baltica OS155]
 gi|160858651|gb|ABX47185.1| DNA replication and repair protein RecF [Shewanella baltica OS195]
 gi|315265354|gb|ADT92207.1| DNA replication and repair protein RecF [Shewanella baltica OS678]
          Length = 360

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 168/362 (46%), Gaps = 25/362 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LNI  FRN  S +L+      +  G NG GKT+ILEAI FL  GR FR      V     
Sbjct: 6   LNIEAFRNIQSAQLIPAPGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-ND 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA +    G + I ++     +  VR   I+   ++ +  L + L I  + P S
Sbjct: 65  DDKLTLFATLNLARGDSKIGLRRFRSGETEVR---IDGEKVKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSI 186
              +F G    RR+F+D   F  DP+      +  R+++ RN+LL  G  Y +  +    
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHADPQFYGAWTNVRRVLKQRNQLLRNGSAYSNIQFWDQE 180

Query: 187 EAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             + AE   +I    V+ +N  L  +I E++   +   +K+S T   D K D  F  L E
Sbjct: 181 FVRYAEQVTEIRNHYVDSLNELLKGIIGEFLPSVD---VKVSFTRGWDSKTD--FAELLE 235

Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y++ L  G         T+ GPH++DL +         A  S G+ K+++  + +A  
Sbjct: 236 NQYSRDLATG--------HTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363
           +L+        I L+D++ + LD   R  L + +TD G+Q+F+T  D  ++ DSL+    
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPS 346

Query: 364 FM 365
            M
Sbjct: 347 RM 348


>gi|217971219|ref|YP_002355970.1| recombination protein F [Shewanella baltica OS223]
 gi|304412707|ref|ZP_07394310.1| DNA replication and repair protein RecF [Shewanella baltica OS183]
 gi|307305828|ref|ZP_07585574.1| DNA replication and repair protein RecF [Shewanella baltica BA175]
 gi|254790487|sp|B8E3P6|RECF_SHEB2 RecName: Full=DNA replication and repair protein recF
 gi|217496354|gb|ACK44547.1| DNA replication and repair protein RecF [Shewanella baltica OS223]
 gi|304348917|gb|EFM13332.1| DNA replication and repair protein RecF [Shewanella baltica OS183]
 gi|306911321|gb|EFN41747.1| DNA replication and repair protein RecF [Shewanella baltica BA175]
          Length = 360

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 168/362 (46%), Gaps = 25/362 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LNI  FRN  S +L+      +  G NG GKT+ILEAI FL  GR FR      V     
Sbjct: 6   LNIEAFRNIQSAQLIPAPGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-ND 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA +    G + I ++     +  VR   I+   ++ +  L + L I  + P S
Sbjct: 65  DDKLTLFATLNLARGDSKIGLRRFRSGETEVR---IDGEKVKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSI 186
              +F G    RR+F+D   F  DP+      +  R+++ RN+LL  G  Y +  +    
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHADPQFYGAWTNVRRVLKQRNQLLRNGSSYSNIQFWDQE 180

Query: 187 EAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             + AE   +I    V+ +N  L  +I E++   +   +K+S T   D K D  F  L E
Sbjct: 181 FVRYAEQVTEIRNHYVDSLNELLKGIIGEFLPSVD---VKVSFTRGWDSKTD--FAELLE 235

Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y++ L  G         T+ GPH++DL +         A  S G+ K+++  + +A  
Sbjct: 236 NQYSRDLATG--------HTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363
           +L+        I L+D++ + LD   R  L + +TD G+Q+F+T  D  ++ DSL+    
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPS 346

Query: 364 FM 365
            M
Sbjct: 347 RM 348


>gi|70725005|ref|YP_251919.1| recombination protein F [Staphylococcus haemolyticus JCSC1435]
 gi|82581561|sp|Q4LAL2|RECF_STAHJ RecName: Full=DNA replication and repair protein recF
 gi|68445729|dbj|BAE03313.1| DNA repair and genetic recombination protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 371

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 164/379 (43%), Gaps = 29/379 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLKTLQLENYRNYEEVTLECHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F S +A++EG+      ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNSEYAKIEGVLNYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKQDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q A+  + + + R   I  L SL            E +     P IKLS   
Sbjct: 176 TMLEVLNQQFAQYALNVTLRREHFIKELESLAKPIHAGITNERETLSLTYLPSIKLS--- 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                  +    L +E    L D  K +      L GPHR DL  +  D      +GS G
Sbjct: 233 ----DMSKGEQTLWDEVITLLNDNIKREMDRGVCLFGPHRDDLGFNVNDMDAQ-TYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346

Query: 351 DKSVFD-SLNETAKFMRIS 368
                D  +   AK  RI+
Sbjct: 347 SVDGIDHEIMNNAKLYRIN 365


>gi|289577269|ref|YP_003475896.1| DNA replication and repair protein RecF [Thermoanaerobacter
           italicus Ab9]
 gi|289526982|gb|ADD01334.1| DNA replication and repair protein RecF [Thermoanaerobacter
           italicus Ab9]
          Length = 362

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 163/354 (46%), Gaps = 21/354 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRN    R+ F     IF G N  GK+N+LE+I  LS GR FR +   ++ R
Sbjct: 3   VKELFVDNFRNLEKQRIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKSTELVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G   F   + +    +   D  I+   + D + + +++N   I+ + EL   L      
Sbjct: 63  FGENYF---YVKAIICQENNDKKIEFGYKKDGN-KVIKVNSNKIKSISELLGQLLTVIFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183
           P    I       RR++LD  +  I+  +   ++ + +++  RN+LL    EG    +  
Sbjct: 119 PEDLNIIKEGPSHRRKYLDSCISIIEKNYLYNLMQYNKILMNRNKLLKNIKEGK-SKNIL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQSF 240
              + Q+ E G KI + R   +  L   I ++   +  E    + L+  G  D   +++ 
Sbjct: 178 EIFDNQLVEYGAKIIMVRQNYLKNLEINIKKFLLEISNEKAEIVYLNSVGLKDASDEET- 236

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298
             +K+   +KL     +D     T +GPHR D  +I++  D  +   + S G+Q+   + 
Sbjct: 237 --VKKRLKEKLSKNIDLDLKYLTTQVGPHREDFKIIINGYDSRV---YSSQGQQRTAALC 291

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + L+   ++   T   P+LLLD++ + LDE+++  +   +   G Q F+T T K
Sbjct: 292 LKLSEFEILKKATNEKPVLLLDDVMSELDENRKKYVLEKLK--GFQTFITHTTK 343


>gi|315650189|ref|ZP_07903264.1| recombination protein F [Eubacterium saburreum DSM 3986]
 gi|315487546|gb|EFU77854.1| recombination protein F [Eubacterium saburreum DSM 3986]
          Length = 363

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 167/367 (45%), Gaps = 19/367 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L + ++RNY +L +       IF GDN  GKTNILE+I   +  +  R +   D+ R
Sbjct: 3   IESLELKDYRNYENLNIKLSTGVNIFYGDNAQGKTNILESIYLATTSKSHRGSKDKDIIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125
            G+       + ++ M    D S++++    ++  + + IN + IR + EL     + + 
Sbjct: 63  FGAGE-----SHIKLMIKRMDASVRMDMHIKKNKAKGVAINGIPIRKLSELFGTCNVVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERR F+D  +  ++  +   ++ + +++  RN+LL E  F +    +
Sbjct: 118 SPEDLNIIKRSPKERRNFVDMELCQLNKVYVSTLVTYNKVLEQRNKLLKEIGFKTGLEDT 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           +   + Q+ + G  +   R E +  L+ +I +         I   LTG    K       
Sbjct: 178 LDIWDMQLIKYGTDLISYREEFVKKLNEVIFD---------IHSRLTGGEKIKVIYEKNI 228

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            K+ +  +L   R  D   + T +GPHR D      ++      GS G+Q+ + + + L+
Sbjct: 229 EKDNFEAELRKSRTNDIKYKTTNVGPHRDDFSFFLNNEMDLKKFGSQGQQRSLALSLKLS 288

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              LI    G  P+LLLD++ + LD  +++ L   +  I + I  TG +  +  SL +  
Sbjct: 289 EIELIKVRYGEFPVLLLDDVLSELDGKRQSHLLESIRHIQTLITCTGVEDFLNKSL-DIG 347

Query: 363 KFMRISN 369
           K   ++N
Sbjct: 348 KVFNVTN 354


>gi|302384448|ref|YP_003820270.1| DNA replication and repair protein RecF [Clostridium
           saccharolyticum WM1]
 gi|302195076|gb|ADL02647.1| DNA replication and repair protein RecF [Clostridium
           saccharolyticum WM1]
          Length = 361

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 160/360 (44%), Gaps = 34/360 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  +RNY  L + F     I  GDN  GKTN+LEAI   +  +  R +   ++ +
Sbjct: 3   IESIELKNYRNYDELHMDFSQGTNILYGDNAQGKTNVLEAIYVCATTKSHRGSKDKEIIQ 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                S      R   +    D+ +K         + + +N V I+   EL   + + + 
Sbjct: 63  FDRDESHIKLNIRKNNIPYRIDMHLK-----KNKAKGVAVNGVPIKKASELFGIVNVVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    +      ERRRF+D  +  ++  +   ++ + R++  RN+LL +  F   +  +
Sbjct: 118 SPEDLNLIKNGPAERRRFVDLELCQLNRYYVHSLVQYNRIVTQRNKLLKDMAFRPDYEET 177

Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK------- 235
           ++    Q+ + G ++   R E I  L  +I              S+ G L G+       
Sbjct: 178 LDVWDMQLVQYGKEMIGYRKEFIEQLDGIIG-------------SIHGQLSGEKEHLRIL 224

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA-HGSTGEQKV 294
           ++ +  A  EE+ + +   R+ D   + TL GPHR DL   +    I I  +GS G+Q+ 
Sbjct: 225 YEPNVGA--EEFEEAIRRSRQQDMKQKTTLTGPHRDDL--SFVINGIDIRRYGSQGQQRT 280

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
             + + LA   L+  T    PILLLD++ + LD  ++N L   +  I + I  TG ++ V
Sbjct: 281 AALSLKLAEIELVEKTVFDYPILLLDDVLSELDNSRQNQLLAGINHIQTVITCTGLEEFV 340


>gi|269303216|gb|ACZ33316.1| DNA replication and repair protein RecF [Chlamydophila pneumoniae
           LPCoLN]
          Length = 364

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 161/368 (43%), Gaps = 13/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L +  FRN++ L +    +    VG N  GKTN+LEA+  LS GR FR     D 
Sbjct: 3   MKICSLKLKNFRNHSDLEISLAPKLNYIVGKNAQGKTNLLEALYVLSLGRSFRTQHLTDT 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              GS  FF     +E       +   L    D+  + +  N + I+ + +L   + I  
Sbjct: 63  ITFGSSHFF-----LETQFEKDHLPQALSIYTDKQGKKIFYNQLPIKTLSQLIGKVPIV- 116

Query: 125 LVPSMDRIF-SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           L  S DR+  SG   +RR FL+ ++   D  +   +  + R ++ RN LL      +S  
Sbjct: 117 LFSSKDRLLISGAPADRRLFLNLLLSQCDSHYTLCLSYYHRALQQRNALLKSK--QTSTV 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           +  + Q+ + G  ++I R      LS L  E         + L     L    D S  A+
Sbjct: 175 AIWDEQLVKHGTYLSIQRFLCSQKLSDLSKELWSNNLKEQLALKFKSSLIKNSDISETAV 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            EE+ K+L      D     T +GPHR D ++      ++    S G++  +L  + LA 
Sbjct: 235 AEEFHKQLSISLPRDLEWGSTSVGPHREDFLLTMNQMPVS-QFSSEGQKHSLLAILRLAE 293

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
              +  +   +P++ LD+I A LD ++   L  +   +G Q  +T T   +   L +T+ 
Sbjct: 294 CLYLKQSHHVSPLVCLDDIHAGLDNERVGQLLDLAPTLG-QTLITSTH--MHGELPKTSL 350

Query: 364 FMRISNHQ 371
            + I N Q
Sbjct: 351 VLSIENAQ 358


>gi|319936687|ref|ZP_08011100.1| DNA replication and repair protein recF [Coprobacillus sp. 29_1]
 gi|319808244|gb|EFW04809.1| DNA replication and repair protein recF [Coprobacillus sp. 29_1]
          Length = 369

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 166/356 (46%), Gaps = 28/356 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  + +  FRNY    + F     IF+G N  GKTN+LEAI  LS  + F+     + 
Sbjct: 1   MKINHIELKNFRNYKDCSVDFAPFINIFIGKNAQGKTNLLEAIYILSLSKSFKTKVIEEF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F   FA++ G     +  I LE    +  +   IN   I+   +   +L +  
Sbjct: 61  I-----YFNEDFAKIHGRVNSHEKDIDLEVVLSKYGKKAIINHKEIKKTSDYVGYLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGY--FD 179
            +P    +  G    RR+ +D  +  I P +   +  + +L++ RN   ++L E +  +D
Sbjct: 116 FIPEDLMLIKGSPRLRRKLMDMEISKISPIYMYNLNKYNKLLKERNKYLKMLHEKHRRYD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVE---MINALSSLIMEYV--QKENFPHIKLSLTGFLDG 234
             +   +  QMA L V +   R+E   ++N +SS + +Y+   KE     KL +      
Sbjct: 176 -EYLDVLSEQMARLQVDLIKKRIEFVDLLNDISSTMYDYISLHKE-----KLRIEYKCIY 229

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           K D S+  + E+Y K      + D    +T+ G H+ D+++   DK   +A+ S G+Q+ 
Sbjct: 230 K-DLSYEGILEKYQK----NYQRDISYSQTVDGLHKDDMLMSLDDKD-AVAYASQGQQRS 283

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +++ I +    LI    G  PILLLD++ + LD+ ++  L  ++     Q F+T T
Sbjct: 284 IVLAIKIGLLELIKKEIGEYPILLLDDVLSELDDVRKTKLLNLIQG-KVQTFLTST 338


>gi|90408444|ref|ZP_01216604.1| recombination protein F [Psychromonas sp. CNPT3]
 gi|90310428|gb|EAS38553.1| recombination protein F [Psychromonas sp. CNPT3]
          Length = 360

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 164/360 (45%), Gaps = 31/360 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L F+ Q  +  GDNG GKT +LEAI FL  GR FR      +     
Sbjct: 6   LVIHQFRNIHSATLHFNKQINVITGDNGSGKTALLEAIYFLGLGRSFRSHLSNRIITHEH 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P F   FA ++       I +K +TR   S+  L+IN  +   + +L +HL +  + P  
Sbjct: 66  PEFI-LFAEIDEQGVQVPIGLK-KTRKGESI--LKINTRIATKLADLTQHLPLQLITPDS 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI-EA 188
             + SG    RR FLD  VF  DP   +     +RL++ RN  L +       C +  E 
Sbjct: 122 INLLSGSPKNRRAFLDWGVFYHDPLFYQTWARIKRLLKQRNAALKQ-------CKTYNEL 174

Query: 189 QMAE-----LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           Q+ +     L  +I+  R      L  LI + +  +  P   + ++ F    +D +  +L
Sbjct: 175 QLWDNELCFLSTEISDQRQRYFQQLIPLIEKTI-ADFLPEFSIKMSFFCG--WDNTNKSL 231

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDL---IVDYCDKAITIAHGSTGEQKVVLVGIF 300
           ++ +     D  + D     T  GP ++D+   I  Y    +     S G+ K+ +  + 
Sbjct: 232 QQYF----IDNFERDKQLGYTTAGPQKADIRFKIGSYPLADVL----SRGQLKLFVYALR 283

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA    ++N      + L+D+ S+ LD+ K+  L + +    +Q+F++  DK+  ++L E
Sbjct: 284 LAQGLFLNNVNNKKCVFLIDDFSSELDQSKQQILAKHIIQSDAQLFISVIDKNHIENLFE 343


>gi|322386450|ref|ZP_08060079.1| recombination protein F [Streptococcus cristatus ATCC 51100]
 gi|321269536|gb|EFX52467.1| recombination protein F [Streptococcus cristatus ATCC 51100]
          Length = 371

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 161/363 (44%), Gaps = 10/363 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  FRNY +  + FD    IF+G N  GKTNILEAI FL+  R  R  +  D+  
Sbjct: 3   LKTLKIKHFRNYQAAEVDFDPGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRTDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               +       +E   G   + I+L  +     R  +IN +    + +    + +    
Sbjct: 63  FQEKN-LQISGIIEKTTGKIPLDIELTPKG----RITKINHLKQGKLSDYIGIVNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGAPALRRKFIDIELGQIKPIYLADLSSYNHVLKQRNAYLKANDKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           ++ Q+ + G ++   R++ I  L     E     +    KL++       F      L+ 
Sbjct: 178 LDEQLIDFGCRVMQHRLDFIEKLEDFAQESHSDISQGKEKLTIKYVSSVPF-SCLENLEA 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            +   L + R+ D   + T +GPHR D  +++    +    GS G+ + +++ + LA  +
Sbjct: 237 SFRSALSESRRRDLFKKNTGVGPHRDD--INFFINDMDAGFGSQGQHRSLVLSLKLAEIK 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           LI + T   PILLLD++ + LD  ++  L   ++    Q F+T T      +L +     
Sbjct: 295 LIESLTKDTPILLLDDVMSELDNMRQLKLLETISQ-NIQTFITTTSLDHLQNLPDDINIF 353

Query: 366 RIS 368
           +IS
Sbjct: 354 QIS 356


>gi|160878166|ref|YP_001557134.1| DNA replication and repair protein RecF [Clostridium
           phytofermentans ISDg]
 gi|189039622|sp|A9KPP4|RECF_CLOPH RecName: Full=DNA replication and repair protein recF
 gi|160426832|gb|ABX40395.1| DNA replication and repair protein RecF [Clostridium
           phytofermentans ISDg]
          Length = 360

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 170/370 (45%), Gaps = 29/370 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +S FRNY +L L F     I  GDN  GKTNILEA+   +  +  + +   ++ +
Sbjct: 3   VKSLELSNFRNYENLSLEFSPSTNILYGDNAQGKTNILEAVFLCATTKSHKGSKDREIIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           + S        R+       D  + +  + ++  + + I+ + I+   EL   + + +  
Sbjct: 63  LQSE---EAHIRMRINRDDVDHRLDMHLKKNKP-KGVAIDGIPIKRSSELFGIINVVFFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    I      ERRRF+D  +  +   +   +I++ +++  RN LL +  F+ S   ++
Sbjct: 119 PEDLSIIKNGPSERRRFIDMELCQLSKLYLHNLINYNKVLNQRNNLLKQIGFNKSLLDTL 178

Query: 187 ---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-- 241
              + Q+   G  +   R   + +++ LI+         H KLS     DGK +      
Sbjct: 179 YVWDQQLIHFGSALIKERDAFMKSMNELIIAL-------HKKLS-----DGKEELEIVYE 226

Query: 242 --ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLV 297
               + E+  KL    + D   + T +GPHR DL  +++  D      +GS G+Q+   +
Sbjct: 227 ASVAESEFENKLKKSMERDIALKVTNVGPHRDDLSFLINGQD---VRKYGSQGQQRTAAL 283

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA   L+   T   PILLLD++ + LD  ++N L   +  I + +  TG ++ V + 
Sbjct: 284 SLKLAEIELVKQVTKDKPILLLDDVLSELDRKRQNQLLDSIVGIQTIVTCTGLEEFVNNR 343

Query: 358 LNETAKFMRI 367
           + ET +  ++
Sbjct: 344 I-ETDRIYKV 352


>gi|87161857|ref|YP_492726.1| recombination protein F [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|97180982|sp|Q2FKQ2|RECF_STAA3 RecName: Full=DNA replication and repair protein recF
 gi|87127831|gb|ABD22345.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
          Length = 370

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 155/352 (44%), Gaps = 13/352 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D  +      +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 345


>gi|315612172|ref|ZP_07887087.1| recombination protein F [Streptococcus sanguinis ATCC 49296]
 gi|315315733|gb|EFU63770.1| recombination protein F [Streptococcus sanguinis ATCC 49296]
          Length = 365

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 165/368 (44%), Gaps = 22/368 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +     T     G+      SI LE       R  ++N +    + +   H+ +    
Sbjct: 63  FDNEQLHLT-----GLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +    D ++ S 
Sbjct: 118 PEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALK 244
           ++ Q+ + G ++   R++ I  L     ++ QK+   H+++S     L   +  S     
Sbjct: 178 LDDQLIDYGCRVIKHRIKFIKDLE----KFGQKK---HLEISNKLEKLSISYQSSVNFTN 230

Query: 245 EEYAKKLF-----DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           EE     F       R  D   + T +GPHR D  + +    +  + GS G+ + +++ I
Sbjct: 231 EEQLTSSFKIALDKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L 
Sbjct: 289 KLAEIELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLP 347

Query: 360 ETAKFMRI 367
           E      I
Sbjct: 348 ENLSIFNI 355


>gi|163751707|ref|ZP_02158926.1| DNA replication and repair protein RecF [Shewanella benthica KT99]
 gi|161328446|gb|EDP99602.1| DNA replication and repair protein RecF [Shewanella benthica KT99]
          Length = 365

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 106/359 (29%), Positives = 170/359 (47%), Gaps = 31/359 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  FRN AS +L+      +  G NG GKT+ILEAI FL  GR FR      V +  S
Sbjct: 6   LHIETFRNIASAQLLPGEGINLIYGLNGSGKTSILEAIYFLGMGRSFRSHLSQRVIQ-HS 64

Query: 70  PSFFSTFAR--VEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWLV 126
               + FA   V+G E       K+  R  RS    ++I+   ++ +  L + L I  + 
Sbjct: 65  DDKLTLFANLTVQGKES------KIGLRRFRSGETEVKIDGDKVKRLSTLAEFLPIQVIT 118

Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWC 183
           P S   +F G    RR+F+D   F  D R     I+ +R+++ RN+LL     Y    + 
Sbjct: 119 PESFALLFEG-PKSRRQFIDWGAFHCDERFHSAWINVKRILKQRNQLLKNEASYAQIQYW 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFC 241
                + +E+   I   R + +N+L+ L+   ++ E  P   +K+S T   D K D    
Sbjct: 178 DRELVRYSEVVTDI---RTQYVNSLNELLKGIIE-EFLPQVDVKISFTRGWDSKTD---- 229

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
                YA+ L      D  S  T  GPH++DL +      +  A  S G+ K+++  + +
Sbjct: 230 -----YAQLLETQYPRDVSSGNTASGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRI 283

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLN 359
           A  +L+        I L+D++ + LD   R  L + +TD G+Q+F+T  +  ++ DSLN
Sbjct: 284 AQGKLLKQQIDKNSIYLVDDLPSELDAKHRQLLLQQLTDTGAQVFVTAIEPAAILDSLN 342


>gi|297543502|ref|YP_003675804.1| DNA replication and repair protein RecF [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296841277|gb|ADH59793.1| DNA replication and repair protein RecF [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 362

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 163/354 (46%), Gaps = 21/354 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRN    R+ F     IF G N  GK+N+LE+I  LS GR FR +   ++ R
Sbjct: 3   VKELFVDNFRNLEKQRIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKSTELVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G   F   + +    +   D  I+   + D + + +++N   I+ + EL   L      
Sbjct: 63  FGENYF---YVKAIICQENNDKKIEFGYKKDGN-KVIKVNSNKIKSISELLGQLLTVIFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183
           P    I       RR++LD  +  I+  +   ++ + +++  RN+LL    EG    +  
Sbjct: 119 PEDLNIIKEGPSHRRKYLDSCISIIEKNYLYNLMQYNKILMNRNKLLKNIKEGK-SKNIL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQSF 240
              + Q+ E G KI + R   +  L   I ++   +  E    + L+  G  D   +++ 
Sbjct: 178 EIFDDQLVEYGAKIIMVRQNYLKNLEINIKKFLLEISNEKAEIVYLNSVGLKDASDEET- 236

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298
             +K+   +KL     +D     T +GPHR D  +I++  D  +   + S G+Q+   + 
Sbjct: 237 --VKKRLKEKLSKNIDLDLKYLTTQVGPHREDFKIIINGYDSRV---YSSQGQQRTAALC 291

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + L+   ++   T   P+LLLD++ + LDE+++  +   +   G Q F+T T K
Sbjct: 292 LKLSEFEILKKATNEKPVLLLDDVMSELDENRKKYVLEKLK--GFQTFITHTTK 343


>gi|162456448|ref|YP_001618815.1| RecF protein [Sorangium cellulosum 'So ce 56']
 gi|161167030|emb|CAN98335.1| RecF protein [Sorangium cellulosum 'So ce 56']
          Length = 383

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 161/359 (44%), Gaps = 29/359 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I EFRN   + +    +  +  G+NG GKT++LEAI F +  R FR    A++ R
Sbjct: 17  LERLHIREFRNLGRVDVEPAPRINVIAGNNGQGKTSLLEAIYFAATSRSFRTHRLAELVR 76

Query: 67  IGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+P   S  AR VE  + L  ++ + +T      RC      V+R+       L  S+ 
Sbjct: 77  HGAP-IASARARFVERRDALQPLA-REQTAAVEHKRC------VVRIDGNRPPSL-ASFA 127

Query: 126 VPSMDRIF--------SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
             S    F        +G +  RR  LDR+   +DP+       + + +R R+ LL  G 
Sbjct: 128 TRSPVVAFHAEELALSTGPASARRTLLDRLALFMDPQSADHRARYAQALRARHELLHRGG 187

Query: 178 FDSSWCS----SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
              +  S    + EA  A  G  +  AR   + AL+  +     +   P + L+      
Sbjct: 188 GAQAQASAELDAFEALCALHGAALTRAREAAVQALAPELTHAFARIAAPDLTLAARYAPG 247

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           G  D       E+  + L + R+ D+       GPHR DL+++       +   S G+ +
Sbjct: 248 GGGD------AEQAREALREQRRRDAHRPSAGYGPHRDDLLLELDGHPARVV-ASQGQHR 300

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            + + +  A    I++  G  PILLLD++S+ LD D+  ALF  +     Q+F+T T +
Sbjct: 301 ALTLALKAAETAAIASVRGVEPILLLDDVSSELDPDRTAALFMFLGMARGQVFLTTTRR 359


>gi|158334838|ref|YP_001516010.1| recombination protein F [Acaryochloris marina MBIC11017]
 gi|189039615|sp|B0CB57|RECF_ACAM1 RecName: Full=DNA replication and repair protein recF
 gi|158305079|gb|ABW26696.1| DNA replication and repair protein RecF [Acaryochloris marina
           MBIC11017]
          Length = 374

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 169/359 (47%), Gaps = 15/359 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++ +FRNY + ++ F A  TI VG N  GK+N+LEA+  LS  +  R +   D+ +
Sbjct: 3   LQQLHLIQFRNYVAQQVEFSAPKTILVGPNAQGKSNLLEAVELLSTLKSHRVSRDRDLVK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  S     A ++   G  D+S+ L     R+V    +N   IR   +   HL I    
Sbjct: 63  DGE-SLSQVTATLQRESGPLDLSLTLRANGRRTVS---VNSETIRRQLDFLGHLNIVQFS 118

Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GYFD 179
              MD +  G   ERR +LD ++  ++P +   +  ++++++ RN  L           D
Sbjct: 119 SLDMDLVRGG-PGERRNWLDAVLVQLEPVYAHLLQQYQQVLKQRNAYLKHHRADDAPQLD 177

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                    Q+A  G ++   R  M+  L  L   + Q  +    +L +    +  +D  
Sbjct: 178 PQQLVLWNQQLAASGSRVIQRRQRMLMRLVPLAGHWHQTISGHQEQLEILYTPNVSYDPQ 237

Query: 240 FC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           F   L  ++  +L +   ++ +   +L+GPHR ++ +   +      +GS G+Q+ +++ 
Sbjct: 238 FPEQLYPQFLSQLEEKSMLEQLQGLSLVGPHRDEVTL-LINGTPARQYGSQGQQRTLVLA 296

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           + LA  +LI    G AP+LLLD++ A LD +++N L   +     Q  +T T    FD+
Sbjct: 297 LKLAELKLIEEVVGEAPLLLLDDVLAELDLNRQNQLLDAI-QTRFQTLITTTHLGAFDA 354


>gi|328883700|emb|CCA56939.1| DNA recombination and repair protein RecF [Streptomyces venezuelae
           ATCC 10712]
          Length = 373

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 159/360 (44%), Gaps = 29/360 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLSSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R    +G     I+LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGAER---AVIRAAVTQGERSQLIELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLSLVKGDPGERRRFLDELITARTPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLSLTGFL 232
              D S     +  +A  G ++   R+E+I  L  L     E +     P I L      
Sbjct: 177 RGMDLSTLDVWDQHLARAGAELLAQRLELIAVLQPLADKAYEQLAPGGGP-ILLEYRPSA 235

Query: 233 DGKFDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
            G         +EE   +L D     RK +     TL+GPHR +L++   D      + S
Sbjct: 236 PGAGHT-----REELYAQLIDALAEVRKQEIERGVTLVGPHRDELLLKLGDLPAK-GYAS 289

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+  + G  P+L+LD++ A LD  +R  L  +V   G Q+ +T
Sbjct: 290 HGESWSYALALRLASYDLL-RSEGNEPVLVLDDVFAELDARRRERLAELVAG-GEQVLVT 347


>gi|289168901|ref|YP_003447170.1| recombination protein recF [Streptococcus mitis B6]
 gi|288908468|emb|CBJ23310.1| recombination protein recF [Streptococcus mitis B6]
          Length = 365

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 164/363 (45%), Gaps = 14/363 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++     
Sbjct: 6   LSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                    + G+      SI LE    +  R  ++N +    + +   H+ +    P  
Sbjct: 66  EQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSSIEA 188
            ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S ++ 
Sbjct: 121 LQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSVLDD 180

Query: 189 QMAELGVKINIARVEMINALSSL-IMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCALKEE 246
           Q+ + G ++   R++ I  L      ++ +  N    + +S    ++   +Q+   L E 
Sbjct: 181 QLVDYGCRVMNHRLDFIKKLEYFGCKKHFELSNQIEELSISYQSSVNITDNQN---LSES 237

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++ I LA   L
Sbjct: 238 FKIALEKSRSRDLFKKNTGVGPHRDD--ISFYLNGMDASFGSQGQHRSLVLSIKLAEIEL 295

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           + + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E      
Sbjct: 296 MESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLPENLSIFT 354

Query: 367 ISN 369
           I +
Sbjct: 355 IQD 357


>gi|146319836|ref|YP_001199548.1| recombination protein F [Streptococcus suis 05ZYH33]
 gi|146322027|ref|YP_001201738.1| recombination protein F [Streptococcus suis 98HAH33]
 gi|253752812|ref|YP_003025953.1| DNA replication and repair protein RecF [Streptococcus suis SC84]
 gi|253754637|ref|YP_003027778.1| DNA replication and repair protein RecF [Streptococcus suis P1/7]
 gi|253756570|ref|YP_003029710.1| DNA replication and repair protein RecF [Streptococcus suis BM407]
 gi|166221874|sp|A4W4P9|RECF_STRS2 RecName: Full=DNA replication and repair protein recF
 gi|166221876|sp|A4VYF9|RECF_STRSY RecName: Full=DNA replication and repair protein recF
 gi|145690642|gb|ABP91148.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus
           suis 05ZYH33]
 gi|145692833|gb|ABP93338.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus
           suis 98HAH33]
 gi|251817101|emb|CAZ52753.1| DNA replication and repair protein RecF [Streptococcus suis SC84]
 gi|251819034|emb|CAZ56881.1| DNA replication and repair protein RecF [Streptococcus suis BM407]
 gi|251820883|emb|CAR47649.1| DNA replication and repair protein RecF [Streptococcus suis P1/7]
 gi|292559432|gb|ADE32433.1| RecF protein [Streptococcus suis GZ1]
 gi|319759228|gb|ADV71170.1| recombination protein F [Streptococcus suis JS14]
          Length = 364

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 162/363 (44%), Gaps = 14/363 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRNY  L + F     +F+G+N  GKTNILE+I  L+  R  R  +  D+ +   
Sbjct: 6   LELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
               S    +    G   + I L  +     R  ++N +    +     H+ +    P  
Sbjct: 66  KE-LSISGLLHRTSGKVPLDIHLTDKG----RVTKVNHLKQAKLSNYIGHMNVVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188
            ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +    D ++ S ++ 
Sbjct: 121 LQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQRNTYLKSTDKIDENFLSVLDQ 180

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           Q+AE G ++   R++ +  L       VQ+   N   + +     ++   D     L ++
Sbjct: 181 QLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDD---VNLIDK 237

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           +  +L   RK D   + T +GPHR D  V +    +   + S G+ + +++ + LA   L
Sbjct: 238 FLTELEKSRKRDLFKKNTGVGPHRDD--VAFFINGMNAHYASQGQHRSLVLSLKLAEIEL 295

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +   T   PILLLD++ + LD +++  L   +TD   Q F+T T       L ++ K   
Sbjct: 296 MKEVTREYPILLLDDVMSELDNNRQIKLLETITDT-IQTFITTTSLDHLHKLPDSLKIFH 354

Query: 367 ISN 369
           I +
Sbjct: 355 IES 357


>gi|282902635|ref|ZP_06310528.1| RecF protein [Staphylococcus aureus subsp. aureus C160]
 gi|282918072|ref|ZP_06325822.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus D139]
 gi|282921294|ref|ZP_06329012.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus C427]
 gi|283767794|ref|ZP_06340709.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus H19]
 gi|282315709|gb|EFB46093.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus C427]
 gi|282318357|gb|EFB48717.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus D139]
 gi|282597094|gb|EFC02053.1| RecF protein [Staphylococcus aureus subsp. aureus C160]
 gi|283461673|gb|EFC08757.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus H19]
          Length = 370

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 162/371 (43%), Gaps = 14/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  E+    L D  + +     +L GPHR D+  D  +      +GS G+Q+   + 
Sbjct: 236 NEAARLEDIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRIS 368
           +   AK  RI+
Sbjct: 354 IMNNAKLYRIN 364


>gi|258423234|ref|ZP_05686126.1| recombination protein F [Staphylococcus aureus A9635]
 gi|257846563|gb|EEV70585.1| recombination protein F [Staphylococcus aureus A9635]
          Length = 370

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 161/371 (43%), Gaps = 14/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +     EE    L D  + +     +L GPHR D+  D  +      +GS G+Q+   + 
Sbjct: 236 NEATRLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRIS 368
           +   AK  RI+
Sbjct: 354 IMNNAKLYRIN 364


>gi|329576321|gb|EGG57836.1| DNA replication and repair protein RecF [Enterococcus faecalis
           TX1467]
          Length = 375

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 168/355 (47%), Gaps = 18/355 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A++ G+      ++ LE       R  ++N +  + +      L +  
Sbjct: 61  --IG---WEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +     Y D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKYPDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235
            +   +  Q+AE G K+  AR+  +  L        QK    H + +LT           
Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQK--ISHGRETLTIDYASSIPIDN 233

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            D S  AL+ +  ++L + RK +     T +GPHR DL+     + +   +GS G+Q+  
Sbjct: 234 TDLSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTT 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            + I LA   L+ + TG  P+LLLD++ + LD +++  L   + +   Q F+T T
Sbjct: 293 ALSIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 346


>gi|212632927|ref|YP_002309452.1| recombination protein F [Shewanella piezotolerans WP3]
 gi|226737834|sp|B8CH73|RECF_SHEPW RecName: Full=DNA replication and repair protein recF
 gi|212554411|gb|ACJ26865.1| DNA replication and repair protein RecF [Shewanella piezotolerans
           WP3]
          Length = 360

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 167/359 (46%), Gaps = 33/359 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  FRN  S +L       +  G NG GKT+ILEAI FL  GR FR      V    +
Sbjct: 6   LHIEAFRNITSAQLQPGDGLNVIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVINNDA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
            +  + FA ++  E  + I ++     +  V+   IN   ++ +  L + L I  + P S
Sbjct: 66  DA-LTLFANMQSAEDESKIGLRRFRSGEIEVK---INGDKVKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE- 187
              +F G    RR+F+D   F  DPR     ++  R+++ RN+LL     D S  SSI+ 
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDPRFYAAWVNVRRILKQRNQLLR----DESPYSSIQF 176

Query: 188 -----AQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSF 240
                 + AEL  +I    V+ +N L   I+E    E  P   +K+S T   D       
Sbjct: 177 WDKEFIRYAELVTEIRKQYVDSLNELLKGIIE----EFLPQVDVKVSFTRGWDS------ 226

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              K EYA+ L      D  +  T+ GPH++DL +         A  S G+ K+++  + 
Sbjct: 227 ---KTEYAQLLETQYPRDLATGFTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALR 282

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL 358
           +A  +L+        I L+D++ + LD   R  L + + D G+Q+F+T  +  ++ DSL
Sbjct: 283 IAQGKLLKQQIDKKSIYLVDDLPSELDAQHRKLLLQQLADTGAQVFVTAIEPAAIVDSL 341


>gi|307711205|ref|ZP_07647627.1| DNA replication and repair protein recF [Streptococcus mitis SK321]
 gi|307617167|gb|EFN96345.1| DNA replication and repair protein recF [Streptococcus mitis SK321]
          Length = 365

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 166/372 (44%), Gaps = 26/372 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKQTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--------HIKLSLTGFLDGKFD 237
           ++ Q+ + G ++   R++ I  L S    + +K++F          I    +  +  K D
Sbjct: 178 LDDQLIDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSVNITDKED 233

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                L E +   L   R  D   + T +GPHR D  + +    +  + GS G+ + +++
Sbjct: 234 -----LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQHRSLVL 286

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            I LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +
Sbjct: 287 SIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQN 345

Query: 358 LNETAKFMRISN 369
           L E      I +
Sbjct: 346 LPENLSIFTIQD 357


>gi|326793325|ref|YP_004311145.1| DNA replication and repair protein recF [Marinomonas mediterranea
           MMB-1]
 gi|326544089|gb|ADZ89309.1| DNA replication and repair protein recF [Marinomonas mediterranea
           MMB-1]
          Length = 366

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 161/357 (45%), Gaps = 34/357 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I++ RN   ++     Q  + VG+NG GKT++LEAI  LS GR FR   +    +   
Sbjct: 6   LDIAKLRNLTKIQFEPSHQVNVIVGENGSGKTSVLEAIHLLSYGRSFRSHKHKTYIQHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRD---DRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 FA+++    +  I +K   RD   D  V+  +++ +V     EL + L +  + 
Sbjct: 66  AECI-VFAQLKASTSVFPIGLK-RARDGAIDVRVQGEKVHSIV-----ELAERLPVQLIN 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P   R+  G    RR+F+D   F  D +      D+++ ++ RN LL  G    +  ++ 
Sbjct: 119 PDAFRLLEGSPKIRRQFVDWGAFHFDVQFMPAWRDWQKALKQRNSLLKRGKISPNLLAAF 178

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-----KFDQSFC 241
           + ++  LG  +N  R   +  L             P+ K  L    D       F Q + 
Sbjct: 179 DQELIRLGGTVNEVRQAYVKHL------------IPYFKTVLNALSDELDVSLNFTQGWD 226

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV--DYCDKAITIAHGSTGEQKVVLVGI 299
           A K   A+ L  G   D     T  GP R+DL V     D   T+   S G+QK+V+  +
Sbjct: 227 AQK-TLAEALESGVNRDIELGYTHSGPQRADLRVKTKAGDALDTL---SRGQQKLVVSAL 282

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
            +A  +++++  G   + L+D++ A LD + R  L R++  + SQIF+T       D
Sbjct: 283 KIAQGQVLTD-MGRPLVFLVDDLPAELDANHRQKLCRLLESLNSQIFITSVGSDSLD 338


>gi|55823899|ref|YP_142340.1| recombination protein F [Streptococcus thermophilus CNRZ1066]
 gi|116628673|ref|YP_821292.1| recombination protein F [Streptococcus thermophilus LMD-9]
 gi|81676484|sp|Q5LXI7|RECF_STRT1 RecName: Full=DNA replication and repair protein recF
 gi|122266733|sp|Q03I76|RECF_STRTD RecName: Full=DNA replication and repair protein recF
 gi|55739884|gb|AAV63525.1| DNA repair and genetic recombination protein [Streptococcus
           thermophilus CNRZ1066]
 gi|116101950|gb|ABJ67096.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus
           thermophilus LMD-9]
 gi|312279328|gb|ADQ63985.1| DNA replication and repair protein recF [Streptococcus thermophilus
           ND03]
          Length = 366

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 167/368 (45%), Gaps = 24/368 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++I  FRNY+   + F     IF+G N  GKTNILEAI FL+  R  R  ++ D   I  
Sbjct: 6   IDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHR--THLDKELI-- 61

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     ++ G+      ++ LE       R  ++N +    + +   H+ +    P  
Sbjct: 62  -QFQQNSLKLNGIVHRHSGNLPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188
            ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +    D ++ S ++ 
Sbjct: 121 LQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNAYLKSTDKVDINFLSVLDE 180

Query: 189 QMAELGVKINIARVEMINALS-------SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           Q+A+ G ++   R+E I  L        S++   +++     +K+S    +     Q+  
Sbjct: 181 QLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIER-----LKISYESNIPI---QNSK 232

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            ++E +   L    K D   + T +GPHR DL     D  +  + GS G+Q+ +++ + +
Sbjct: 233 DIREAFLTTLNQNHKRDIFKKNTGVGPHRDDLKFYIND--MNASFGSQGQQRSLILSLKM 290

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           A   LI   T   PILLLD++ + LD  ++  L   + D   Q FMT T      +L   
Sbjct: 291 AEIALIKKVTEEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPPN 349

Query: 362 AKFMRISN 369
            K   + N
Sbjct: 350 LKTFLVKN 357


>gi|326383912|ref|ZP_08205596.1| recombination protein F [Gordonia neofelifaecis NRRL B-59395]
 gi|326197371|gb|EGD54561.1| recombination protein F [Gordonia neofelifaecis NRRL B-59395]
          Length = 405

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 173/383 (45%), Gaps = 33/383 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++   R       T+FVG NG GKTN+LE++ +++  R  R +S A + R
Sbjct: 3   VRELTLRDFRSWPQARFTLSPGTTVFVGRNGFGKTNLLESLFYVATLRSHRVSSDAPLVR 62

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+ +   +     EG E   +++I  +  +  +     IN   +R   E+   LR    
Sbjct: 63  TGADAARVTATVENEGRELTVELTIPAQGANKAT-----INTRPVRRTREVLGILRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------GY 177
            P    +  G   ERRRF+D +V  + P      +D++R++R R+ LL          G 
Sbjct: 118 APEDLALVRGDPGERRRFIDELVAQLRPLAAGAKVDYDRVLRQRSALLKTASAAMRRGGE 177

Query: 178 FDSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
              S  S++   +AQ+AELG ++  +R+ ++  L+  + +       PH + +   +   
Sbjct: 178 QAESVLSTLDVWDAQLAELGAQVTASRLAVVRQLAPFVTD-AYSSIAPHSRPAHISYRSA 236

Query: 235 K---------FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
                      D    A+++  A++L + R  +      L+GPHR DL +   D+     
Sbjct: 237 AGESVDASPGGDAEIDAIRDVLAQRLVELRSKEIDRGLCLVGPHRDDLFLGLGDEPAK-G 295

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
             S GE     + + L    L+    G  PI++LD++ A LD  +R  L    T    Q+
Sbjct: 296 FASHGESWSFALSLRLGSVELL-RADGVEPIIMLDDVFAELDVTRRRLLAEF-TASADQL 353

Query: 346 FMTGTDKSVFDSLNETAKFMRIS 368
            +T    +V D + E+    RIS
Sbjct: 354 LITA---AVPDDIPESIVGRRIS 373


>gi|303228584|ref|ZP_07315411.1| putative DNA replication and repair protein RecF [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516763|gb|EFL58678.1| putative DNA replication and repair protein RecF [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 366

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 162/364 (44%), Gaps = 26/364 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  L L    +  +  G NG GKTNILEAI   + G+  R    +D+
Sbjct: 1   MRINSLQLFQFRNYKDLTLDLQPEIIVLYGTNGAGKTNILEAIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +          E  E    ++IKL  +  + +R   +ND  I    EL   L    
Sbjct: 61  LLFNANE-AGIVVNFEKKETPQKVNIKLFRQGPKDIR---LNDTKIS-QKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN LL E     +   
Sbjct: 116 FCPEDLQLIKGSPSGRRRFLDMEISQTSATYYHQLLQYNRLLQQRNTLLKEYRGKQNIPL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSF 240
           +  + Q+A++   I   R+E +  ++ LI    +K         LTG L+     ++Q +
Sbjct: 176 AEWDVQLADMAAFIVKKRMESLKKINLLIDLMNRK---------LTGGLENLTIGYEQPY 226

Query: 241 ------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                    KE +   L +    D     T +GPHR DL   + D       GS G+Q+ 
Sbjct: 227 GEEGHMVYTKEAFYDLLQEALPQDRHRMTTSVGPHRDDLRF-FSDAIDLKKFGSQGQQRT 285

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            ++ + L+    I +  G  P+LLLD++ + LDE +RN L + +     Q  +T TD   
Sbjct: 286 AVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDEARRNNLLQFIHK-RIQTVITTTDIHD 344

Query: 355 FDSL 358
           F+++
Sbjct: 345 FENM 348


>gi|325478881|gb|EGC81991.1| putative DNA replication and repair protein RecF [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 359

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 17/348 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L ++ FRNY    + F+  + IF+GDN  GKTN+LE++ +L+ G  F++    D+ R
Sbjct: 3   IKDLKLNNFRNYFYQSVEFNEDYNIFIGDNAQGKTNLLESVYYLANGTSFKKIRDNDIIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S S       +       ++SI+++ +D    + + +N V      +L    +I    
Sbjct: 63  F-SQSQMRLKGTIRKGRSFKEVSIEVKDKD----KSIFVNGVKYDRRKDLRSLFKIVLFT 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183
           P    I       RR  +D ++  ID  ++ +  D+++++  RNRLL   +  YF+    
Sbjct: 118 PEDLAIIKEGPNLRRDLIDGIIEGIDFSYKAKKRDYDKILYQRNRLLKNKSSSYFNEQ-L 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S+ +  + +LG  I   R + +N L     E+          L +    D   D  F + 
Sbjct: 177 SAFDENLMKLGFSIYKTRKKFVNILEKFAREFHSSLTEGSELLEMKYLPDISAD-DFSSY 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             E+ K    GR  D     T  G HR D+ +    K  T    S G+Q+  ++ I LA 
Sbjct: 236 VGEFKK----GRSDDLKYLTTQRGIHRDDIEISINGKN-TKNFASQGQQRSAILNIRLAE 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            +L    TG   ++L D++ + LDE  + +LF +    G Q  +T T+
Sbjct: 291 VKLTKEVTGDEAVILFDDVFSELDE--KRSLFLLENLRGYQTIITATN 336


>gi|170759251|ref|YP_001785339.1| recombination protein F [Clostridium botulinum A3 str. Loch Maree]
 gi|226737781|sp|B1L1K9|RECF_CLOBM RecName: Full=DNA replication and repair protein recF
 gi|169406240|gb|ACA54651.1| DNA replication and repair protein RecF [Clostridium botulinum A3
           str. Loch Maree]
          Length = 364

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 166/362 (45%), Gaps = 39/362 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+ +
Sbjct: 3   IKSVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDLIK 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              + ++  T+   E ++   DI+I    +     + + +N + I+ + EL  +L +   
Sbjct: 63  WDKNNTYLRTYVSRERLDKTIDINIFKNGK-----KAITVNKIKIKKISELMGNLNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +W + 
Sbjct: 118 SPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTAL------KNWNNR 171

Query: 186 I-------EAQMAELGVKINIARVEMINALSSLIMEYVQKE--------NFPHIKLSLTG 230
           I       + Q+++ G  I   R + ++ L ++I + + K+        NF +    LT 
Sbjct: 172 INDIIDVYDEQLSKYGAFIIKERNKYLDKL-NIIGKNIHKKITNDLEDINFRY----LTN 226

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D  FD +   L   + K     RK D     T IGPHR D  V   +   T   GS G
Sbjct: 227 IKD--FDNAEKELLMLFKK----NRKKDLERNSTSIGPHRDDFEVS-INNIDTRIFGSQG 279

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ +  A   +I N  G  P LLLD++ + LD +++  +   +  I + I  TG 
Sbjct: 280 QQRTAVLTLKFASLEIIKNIIGEYPALLLDDVLSELDSNRQKFVLNSIDKIQTIITCTGI 339

Query: 351 DK 352
           ++
Sbjct: 340 EE 341


>gi|254387093|ref|ZP_05002367.1| recombination protein F [Streptomyces sp. Mg1]
 gi|194345912|gb|EDX26878.1| recombination protein F [Streptomyces sp. Mg1]
          Length = 378

 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 160/361 (44%), Gaps = 22/361 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   +  D   T FVG NG GKTN++EAI +L+     R +S A +
Sbjct: 1   MHVSHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAIGYLAVLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R    +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGAD---RAVIRAAVTQGERQQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD +V A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP---HIKLSLT 229
              D S     +  +A  G ++   R+++I  +  L     E +     P     K S  
Sbjct: 177 RSMDLSTLDVWDQHLARAGAELLAQRLDLIATMLPLADKAYEQLAPGGGPLGLAYKSSAG 236

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
             +D    ++  AL E     L D RK +     TL+GPHR D+++   +      + S 
Sbjct: 237 EAVDSGEARTREALYEVLLGALSDVRKQEIERGVTLVGPHRDDVLLRLGELPAK-GYASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE     + + LA   L+  + G  P+L+LD++ A LD  +R  L  +V   G Q+ +T 
Sbjct: 296 GESWSYALALRLASYELL-RSEGAEPVLILDDVFAELDARRRERLAELVAP-GEQVLVTA 353

Query: 350 T 350
            
Sbjct: 354 A 354


>gi|307705894|ref|ZP_07642732.1| DNA replication and repair protein recF [Streptococcus mitis SK597]
 gi|307620555|gb|EFN99653.1| DNA replication and repair protein recF [Streptococcus mitis SK597]
          Length = 365

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 161/353 (45%), Gaps = 26/353 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEDQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQTIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--------HIKLSLTGFLDGKFD 237
           ++ Q+ + G ++   R++ I  L +    + +K++F          I    +  +  K D
Sbjct: 178 LDDQLVDYGCRVMNHRLDFIKKLEA----FGRKKHFELSNQIEELSISYQSSVKITDKED 233

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                L E +   L   R  D   + T IGPHR D  + +    +  + GS G+ + +++
Sbjct: 234 -----LSESFKIALEKSRSRDLFKKNTGIGPHRDD--ISFYINGMDASFGSQGQHRSLVL 286

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            I LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T
Sbjct: 287 SIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SVQTFITTT 338


>gi|239825588|ref|YP_002948212.1| recombination protein F [Geobacillus sp. WCH70]
 gi|259563662|sp|C5D330|RECF_GEOSW RecName: Full=DNA replication and repair protein recF
 gi|239805881|gb|ACS22946.1| DNA replication and repair protein RecF [Geobacillus sp. WCH70]
          Length = 374

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 172/390 (44%), Gaps = 47/390 (12%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  +RNY S  + F     I +G+N  GKTN++EAI  L+  +  R  +  D+ R   
Sbjct: 6   LSLKNYRNYESETIEFANNVNIILGENAQGKTNMMEAIYVLAMAKSHRTTNDKDLIR--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +   +A++EG     + ++ LE   ++  +  +C   N +  + + +   HL I    
Sbjct: 63  --WDEDYAKIEGKAMKKNGALSLELIISKKGKKAKC---NHIEQQRLSQYVGHLNIVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RRRF+D  +  + P +   +  +++L++ RN  L    T    D + 
Sbjct: 118 PEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMLQTREQQDETV 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHI----KLSL 228
              +  Q+  L  KI + R E +  L              +E +Q +  P +    K+ L
Sbjct: 178 LDILTEQLIPLAAKITLKRYEFLLLLQKWAAPIHHEISRGLETLQIQYRPSVDVSEKIEL 237

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
           +  ++  + + F  +KE   +     R M      TL GPHR D+      K + I  GS
Sbjct: 238 SRIIEA-YSEKFATIKEREIQ-----RGM------TLAGPHRDDIAFSVNGKDVQI-FGS 284

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+Q+   + I LA   LI +  G  PILLLD++ + LD+ ++  L   +     Q F+T
Sbjct: 285 QGQQRTTALSIKLAEIELIFSEIGDYPILLLDDVLSELDDFRQTHLLDTIRK-KVQTFVT 343

Query: 349 GT--DKSVFDSLNETAKFMRISNH--QALC 374
            T  +    D + E A +   S H    LC
Sbjct: 344 TTSIEGIEHDIIKEAAIYKVHSGHITAPLC 373


>gi|78221231|ref|YP_382978.1| recombination protein F [Geobacter metallireducens GS-15]
 gi|97180732|sp|Q39ZS1|RECF_GEOMG RecName: Full=DNA replication and repair protein recF
 gi|78192486|gb|ABB30253.1| DNA replication and repair protein RecF [Geobacter metallireducens
           GS-15]
          Length = 365

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 165/361 (45%), Gaps = 37/361 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           + IS FRN A+  + FD +  +  G NG GKT++LEAI  L   + FR A   D+    +
Sbjct: 6   IQISSFRNIAAAEIRFDRRFNVLHGANGQGKTSVLEAIYLLGTMKSFRLAKTPDLVSWNT 65

Query: 70  P-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           P +    +A  +G+    +I++ L  ++ R  R  Q    V R+ D       + +    
Sbjct: 66  PHALLRGWAERDGVG--REIALYL-GKEGRKARVDQ--KPVTRLADFFGNVNAVVFSPEE 120

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--WCSSI 186
           +    SG  + RRR+LDR +F+ D  +     ++ RL++ RN LL  G  +    W    
Sbjct: 121 IAMARSGPDL-RRRYLDRAIFSGDLGYLLLHHEYHRLLKQRNALLKRGSREGLDIWT--- 176

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQK----------ENFPHIKLSLTGFLDGKF 236
             Q+AE G ++ + R+  +  +  L+  + ++             PH  L+    +  + 
Sbjct: 177 -GQLAEAGTRLMVKRMGYLAEIEPLVQRFYREIAGGEEEAGLAYRPH--LTTPDLVSREG 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKV 294
             +  A        LF   + + + R  T++GPHR D  VD+      I  HGS G+Q+ 
Sbjct: 234 TDALLA--------LFGAHEAEELRRGTTVVGPHRDD--VDFVLNGRVIRTHGSQGQQRS 283

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            ++ + +A    +       P+LLLD+IS+ LD  +   L   + +   Q+F+T TD S 
Sbjct: 284 FVLALKMAEIEYLERLNDAPPVLLLDDISSELDPQRNANLMTFLREKRMQVFITTTDVST 343

Query: 355 F 355
            
Sbjct: 344 L 344


>gi|108796985|ref|YP_637182.1| recombination protein F [Mycobacterium sp. MCS]
 gi|119866069|ref|YP_936021.1| recombination protein F [Mycobacterium sp. KMS]
 gi|123369971|sp|Q1BG58|RECF_MYCSS RecName: Full=DNA replication and repair protein recF
 gi|166220717|sp|A1U8S3|RECF_MYCSK RecName: Full=DNA replication and repair protein recF
 gi|108767404|gb|ABG06126.1| DNA replication and repair protein RecF [Mycobacterium sp. MCS]
 gi|119692158|gb|ABL89231.1| DNA replication and repair protein RecF [Mycobacterium sp. KMS]
          Length = 380

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 172/362 (47%), Gaps = 33/362 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +++FR++A   L  +   T+FVG NG GKTN++EA+ + +     R AS A + R
Sbjct: 3   VRHLTLTDFRSWARADLELEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +G+P +  ST    EG E    +++ LE    R+ +  ++N   +R   E+   LR    
Sbjct: 63  VGAPRAVVSTIVVNEGRE----LAVDLEITTGRANKA-RLNRSPVRSPREVLGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FDS 180
            P    +  G   ERRR+LD +     P       D++R++R R  LL          D 
Sbjct: 118 APEDLALVRGDPGERRRYLDELATTRRPSIAGVRADYDRVIRQRTALLKSAAGARYRGDR 177

Query: 181 SWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
           S   ++   +  +A  G  +  AR ++++ L+  + E   +   P  + +       ++ 
Sbjct: 178 SVLETLDVWDGHLAAHGALLMAARADLVHHLAPEV-EKAYQLLAPGSRPAAI-----RYR 231

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHGS 288
            S  A +++ + + ++   +D+M+RR          L+GPHR DL +   D+ +   + S
Sbjct: 232 TSIDA-EDDVSAEYYEAALLDAMTRRRDAELERGVCLVGPHRDDLELRLGDQ-MAKGYAS 289

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE   + + + LA   L+  T G  P+LLLD++ A LD  +R AL  +      Q+ +T
Sbjct: 290 HGESWSMALSLRLAAYELL-RTDGSDPVLLLDDVFAELDAARRRALAEVAAS-AEQVLVT 347

Query: 349 GT 350
             
Sbjct: 348 AA 349


>gi|325695750|gb|EGD37649.1| recombination protein F [Streptococcus sanguinis SK150]
 gi|328945164|gb|EGG39319.1| recombination protein F [Streptococcus sanguinis SK1087]
          Length = 364

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 161/368 (43%), Gaps = 14/368 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+  
Sbjct: 3   LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   +   +E   G   + I L  +     R  ++N +    + +    + +    
Sbjct: 63  FTENDLLVS-GLLEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+ + G ++   R++ +  L S   +  +   +N   + +    +L     Q    L
Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLQKIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GP R D  + +    +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPQRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD +++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-NIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQ 371
              I   Q
Sbjct: 352 IFTIQQGQ 359


>gi|294138804|ref|YP_003554782.1| DNA replication and repair protein RecF [Shewanella violacea DSS12]
 gi|293325273|dbj|BAJ00004.1| DNA replication and repair protein RecF [Shewanella violacea DSS12]
          Length = 365

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 167/355 (47%), Gaps = 23/355 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  FRN AS +L+      +  G NG GKT+ILEAI FL  GR FR      V +  S
Sbjct: 6   LHIETFRNIASAQLLPAEGINLIYGLNGSGKTSILEAIYFLGMGRSFRSHLSQRVIQ-HS 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA++      + I ++     +  V+   I+   I+ +  L + L I  + P S
Sbjct: 65  DDKLTLFAKLNVQNKESKIGLRRFRSGETEVK---IDGDKIKRLSTLAESLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCSSI 186
              +F G    RR+F+D   F  D       ++ +R+++ RN+LL    GY    +  + 
Sbjct: 122 FALLFDG-PKSRRQFIDWGAFHCDKSFHSAWVNVKRILKQRNQLLKNEAGYSQIQYWDTE 180

Query: 187 EAQMAELGVKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             + +E+   I    V  +N  L  +I E++ + +   +K+S T   D K D        
Sbjct: 181 LVRYSEVVTDIRTQYVNSLNEQLKGIIGEFLPQVD---VKVSFTRGWDSKTD-------- 229

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            YA+ L      D  S  T  GPH++DL +      +  A  S G+ K+++  + +A  +
Sbjct: 230 -YAQLLETQYPRDVSSGNTASGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQGK 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLN 359
           L+        I L+D++ + LD   R  L + +TD G+Q+F+T  +  ++ DSLN
Sbjct: 288 LLKQQIDKNSIYLVDDLPSELDAKHRQLLLQQLTDTGAQVFVTAIEPAAILDSLN 342


>gi|82749781|ref|YP_415522.1| recombination protein F [Staphylococcus aureus RF122]
 gi|97180987|sp|Q2YUN8|RECF_STAAB RecName: Full=DNA replication and repair protein recF
 gi|82655312|emb|CAI79692.1| DNA replication and repair protein [Staphylococcus aureus RF122]
          Length = 370

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 161/371 (43%), Gaps = 14/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FNADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L  L              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELELLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D  +      +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFD-VNGMDAQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRIS 368
           +   AK  RI+
Sbjct: 354 IMNNAKLYRIN 364


>gi|152998558|ref|YP_001364239.1| recombination protein F [Shewanella baltica OS185]
 gi|166221863|sp|A6WH87|RECF_SHEB8 RecName: Full=DNA replication and repair protein recF
 gi|151363176|gb|ABS06176.1| DNA replication and repair protein RecF [Shewanella baltica OS185]
          Length = 360

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 167/362 (46%), Gaps = 25/362 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LNI  FRN  S +L+      +  G NG GKT+ILEAI FL  GR FR      V     
Sbjct: 6   LNIEAFRNIQSAQLIPAPGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-ND 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA +    G + I ++     +  VR   I+   ++ +  L + L I  + P S
Sbjct: 65  DDKLTLFATLNLARGDSKIGLRRFRSGETEVR---IDGEKVKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSI 186
              +F G    RR+F+D   F  DP       +  R+++ RN+LL  G  Y +  +    
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHADPLFYGAWTNVRRVLKQRNQLLRNGSSYSNIQFWDQE 180

Query: 187 EAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             + AE   +I    V+ +N  L  +I E++   +   +K+S T   D K D  F  L E
Sbjct: 181 FVRYAEQVTEIRNHYVDSLNELLKGIIGEFLPSVD---VKVSFTRGWDSKTD--FAELLE 235

Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y++ L  G         T+ GPH++DL +         A  S G+ K+++  + +A  
Sbjct: 236 NQYSRDLATG--------HTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363
           +L+        I L+D++ + LD   R  L + +TD G+Q+F+T  D  ++ DSL+    
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPS 346

Query: 364 FM 365
            M
Sbjct: 347 RM 348


>gi|189501917|ref|YP_001957634.1| hypothetical protein Aasi_0498 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497358|gb|ACE05905.1| hypothetical protein Aasi_0498 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 370

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 155/346 (44%), Gaps = 30/346 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYADVTRIG 68
           L    F+NY S+ L F  Q    VG NG GKTN+L+AI +LS  +  F      ++   G
Sbjct: 6   LRCYHFKNYDSIELSFATQLNCIVGANGAGKTNLLDAIHYLSLTKSAFNSIDSQNILHGG 65

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWLVP 127
                 T   ++G     D S  ++   DR   + LQ+N    + + E      I    P
Sbjct: 66  ------TQMSIQGHFFKNDKSYDVKCIVDRDQGKSLQVNGKAYKTMREHIGQFPIVLTTP 119

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYF--DSSWC 183
               +    S  RR+F D ++  IDP +   +I ++++++ RN  L  + G F  D +  
Sbjct: 120 YDTELIRSTSEVRRKFFDAILCQIDPNYLHTLIQYQQILKHRNSFLKMSAGKFNVDRALI 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF---PHIKLSLTGFLDGKFDQSF 240
           +S + Q+  L  ++  AR   ++    ++ +  Q E F   P I     G+     D  F
Sbjct: 180 NSYDTQLLPLCKQLYAARKAFVDIFYPILQQ--QYEYFVDAPEI--IEMGYESDADDPGF 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                   ++  D  K D +++RT++G HR D +    +  I    GS G+QK  ++ + 
Sbjct: 236 -------EQRFLDNIKEDLLAQRTILGIHRDDYVFMLNNYPIK-KFGSQGQQKSFIIALR 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           LA    I    G  P+LLLD+I   LDE +   + R+V  +  Q F
Sbjct: 288 LAQFACIHQALGCKPLLLLDDIFDKLDEQR---IERLVYLMAQQYF 330


>gi|21222284|ref|NP_628063.1| recombination protein F [Streptomyces coelicolor A3(2)]
 gi|256786616|ref|ZP_05525047.1| recombination protein F [Streptomyces lividans TK24]
 gi|289770509|ref|ZP_06529887.1| recombination protein F [Streptomyces lividans TK24]
 gi|548717|sp|P36176|RECF_STRCO RecName: Full=DNA replication and repair protein recF
 gi|436025|gb|AAA65213.1| putative [Streptomyces coelicolor A3(2)]
 gi|8247658|emb|CAB92996.1| DNA replication protein [Streptomyces coelicolor A3(2)]
 gi|289700708|gb|EFD68137.1| recombination protein F [Streptomyces lividans TK24]
 gi|1093582|prf||2104262B recF gene
          Length = 373

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 160/361 (44%), Gaps = 27/361 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     I+LE    R+ R        ++  D L   +R   
Sbjct: 61  VRMGA---ERAVIRAQVRQGERQQLIELELNPGRANRARVNRSSQVKPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP---HIKLSLT 229
              D S     +  +A  G ++   R+++I ++  L     E +     P     K S  
Sbjct: 177 RTMDLSTLDVWDQHLARAGAELLAQRLDLIASVQPLADKAYEQLAPGGGPVALEYKPSAP 236

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           G    + D     L E+    L + RK +     TL+GPHR DL++          + S 
Sbjct: 237 GEAHTRED-----LYEQLMAALAEARKQEIERGVTLVGPHRDDLLLKLGSLPAK-GYASH 290

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T 
Sbjct: 291 GESWSYALALRLASFDLL-RAEGNEPVLVLDDVFAELDARRRERLAELVAP-GEQVLVTA 348

Query: 350 T 350
            
Sbjct: 349 A 349


>gi|120401032|ref|YP_950861.1| recombination protein F [Mycobacterium vanbaalenii PYR-1]
 gi|166220720|sp|A1T105|RECF_MYCVP RecName: Full=DNA replication and repair protein recF
 gi|119953850|gb|ABM10855.1| DNA replication and repair protein RecF [Mycobacterium vanbaalenii
           PYR-1]
          Length = 386

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 169/362 (46%), Gaps = 27/362 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +++FR++A + L  +   T+FVG NG GKTN++EA+ + +     R AS A + R
Sbjct: 3   VRHLALTDFRSWARVELELEPGRTVFVGSNGFGKTNLIEALWYSATLGSHRVASDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    +G E    +++ L+    R+ +  ++N   +R   E+   LR    
Sbjct: 63  AGAERAVVSTIVVNDGRE----LAVDLDITSGRANKA-RLNRSPVRSAREILGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FDS 180
            P    +  G   ERRR+LD +     PR      D+++++R R  LL          D 
Sbjct: 118 APEDLALVRGDPGERRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASGARYRGDR 177

Query: 181 SWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
               +++     +A  G ++  ARV+++N L+  + E   +   P  + +   +  G   
Sbjct: 178 GALETLDVWNGHLASHGAQLISARVQLVNELAPEV-EKAYQLLAPGSRPAAIRYRSGVDV 236

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHGS 288
               A      +++F+   +D++SRR          L+GPHR DL +   D+ +     S
Sbjct: 237 VEAEAAAGNSDEEMFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQ-VAKGFAS 295

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE   + + + LA   L+    G  P+LLLD++ A LD  +R AL ++      Q+ +T
Sbjct: 296 HGESWSMALALRLAAYELL-RVEGSDPVLLLDDVFAELDSARRQALAQVAA-TAEQVLVT 353

Query: 349 GT 350
             
Sbjct: 354 AA 355


>gi|311741697|ref|ZP_07715519.1| recombination protein F [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311303218|gb|EFQ79299.1| recombination protein F [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 391

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 174/380 (45%), Gaps = 30/380 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++ +FR++  L +      T+FVG NG GKTNI+EAI + +     R +  A + R
Sbjct: 3   VRDLDVRDFRSWPELNVQLGPGITLFVGRNGFGKTNIVEAIGYTAHLSSHRVSHDAPLVR 62

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+ S   S  A  +G E    + IK       +    QIN   +R   EL   ++    
Sbjct: 63  QGADSARVSITAVNQGRELTTHLLIK-----PHAANQAQINRTRLRSPRELLGVVKTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178
            P    +  G    RR +LD ++ +  PR      D++++++ RN LL         GY 
Sbjct: 118 SPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASGSLRRGYS 177

Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIKLSL 228
           DS   +++      +AQ+A LG ++  AR+ +++AL   I      +  E+ P H++   
Sbjct: 178 DSDGAAALATLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYSGLAPESRPAHVEYKS 237

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
           T  +D    +   A+      +L   R+ +     +L+GPHR DL+++  D+       S
Sbjct: 238 T--IDTSDREVLEAV---LLTELAAARQREIERGISLVGPHRDDLVLNLGDQPAK-GFAS 291

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +  +    +   
Sbjct: 292 HGETWSYAIALRLAEFNLLRQEGGSDPVLILDDVFAELDAKRRKQLVHLAAEAEQVLITA 351

Query: 349 GTDKSVFDSLNETAKFMRIS 368
             D+ +  +L    ++ R+S
Sbjct: 352 AVDEDLPGNLEPIVRY-RVS 370


>gi|90960994|ref|YP_534910.1| recombination protein F [Lactobacillus salivarius UCC118]
 gi|122449496|sp|Q1WVP2|RECF_LACS1 RecName: Full=DNA replication and repair protein recF
 gi|90820188|gb|ABD98827.1| DNA replication and repair protein [Lactobacillus salivarius
           UCC118]
 gi|300213942|gb|ADJ78358.1| DNA replication and repair protein recF [Lactobacillus salivarius
           CECT 5713]
          Length = 379

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 164/379 (43%), Gaps = 38/379 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRNY  + + F  Q  + +G N  GKTN+LE+I  L+  R  R ++  ++     
Sbjct: 6   LELKHFRNYEDVNVAFSPQVNVLIGKNAQGKTNLLESIYVLAMARSHRTSNDREMV---- 61

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F    A + G       + KLE    R  +  ++N +    + +    L +    P  
Sbjct: 62  -TFKKDAALIRGEVHQRLGNTKLELLISRKGKKAKVNHLEKARLSQYIGQLNVILFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D     ID  +   + ++  ++R RN+ L    T+   D  +   
Sbjct: 121 LALVKGAPSVRRRFIDMEFGQIDALYLHTLTEYRAVLRQRNKYLKELQTKKATDKVYLEI 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK------ENFPHIKLSLTGFLDGKFDQS 239
           +  Q++E G +I   R+E +  L     +Y  K      +   H++      L     +S
Sbjct: 181 LSEQLSESGSQIIFKRLEFLQELE----KYADKLHNQITQGKEHLQFQYESTLKEYQGKS 236

Query: 240 FCALK----EEYA----KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
              LK    E+Y     K++F G         TL+GPHR D+     DK + + +GS G+
Sbjct: 237 VLELKQSLIEQYKTMMDKEIFQG--------TTLLGPHRDDVRFMLNDKNVQV-YGSQGQ 287

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           Q+   + + LA   L+   T   PILLLD++ + LD  ++  L + + +   Q F+T   
Sbjct: 288 QRTAALSVKLAEIDLMKEKTHEYPILLLDDVLSELDGARQTHLLKTIQN-KVQTFLTTPG 346

Query: 352 KS-VFDSLNETAKFMRISN 369
            S V   L    K  RI N
Sbjct: 347 LSDVAQQLINKPKIFRIDN 365


>gi|119773157|ref|YP_925897.1| recombination protein F [Shewanella amazonensis SB2B]
 gi|166221861|sp|A1S1H1|RECF_SHEAM RecName: Full=DNA replication and repair protein recF
 gi|119765657|gb|ABL98227.1| DNA replication and repair protein RecF [Shewanella amazonensis
           SB2B]
          Length = 360

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 170/353 (48%), Gaps = 21/353 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  FRN  S +L   A   +  G NG GKT+ILEAI FL  GR FR      V +   
Sbjct: 6   LSIDAFRNIDSAQLAPGAGLNLIYGHNGSGKTSILEAIYFLGMGRSFRSHLSQRVIQ-ND 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA  EG  G + I ++     D  V+   I+   ++ + +L + L I  + P S
Sbjct: 65  ADCLTLFAVAEGQAGDSRIGLRRHRSGDTEVK---IDGEKVKRLSQLAEALPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
              +F G S  RR+F+D   F    +     ++  R+++ RN+LL +G       +  + 
Sbjct: 122 FSLLFEGPSA-RRQFIDWGAFHASKQFHLAWMNTRRILKQRNQLLRDGA-SYEHIAFWDK 179

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCALKEE 246
           ++    +++   R + + +L+  +++ +  E  P   I++S T   D K D S   L+ +
Sbjct: 180 ELIRYALEVTAIRNDYVGSLNG-VLKGIIGEFLPDVDIRVSFTRGWDSKTDFSEL-LQSQ 237

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L  G         T+ GPH++DL +   +     A  S G+ K+++  + +A  +L
Sbjct: 238 YARDLAIG--------HTVSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQGKL 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSL 358
           +        I L+D++ + LD   R  L + + D G+Q+F+T  + S + DSL
Sbjct: 289 LKQQIDKHSIYLVDDLPSELDAKHRQLLLKELIDTGAQLFVTAIEPSAIVDSL 341


>gi|55821982|ref|YP_140424.1| recombination protein F [Streptococcus thermophilus LMG 18311]
 gi|81676637|sp|Q5M237|RECF_STRT2 RecName: Full=DNA replication and repair protein recF
 gi|55737967|gb|AAV61609.1| DNA repair and genetic recombination protein [Streptococcus
           thermophilus LMG 18311]
          Length = 366

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 167/368 (45%), Gaps = 24/368 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++I  FRNY+   + F     IF+G N  GKTNILEAI FL+  R  R  ++ D   I  
Sbjct: 6   IDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHR--THLDKELI-- 61

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     ++ G+      ++ LE       R  ++N +    + +   H+ +    P  
Sbjct: 62  -QFQQNSLKLNGIVHRHSGNLPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188
            ++  G    RR+F+D  +  I P +   + ++  +++ RN  L +    D ++ S ++ 
Sbjct: 121 LQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNAYLKSTDKVDINFLSVLDE 180

Query: 189 QMAELGVKINIARVEMINALS-------SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           Q+A+ G ++   R+E I  L        S++   +++     +K+S    +     Q+  
Sbjct: 181 QLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIER-----LKISYESNIPI---QNSK 232

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            ++E +   L    K D   + T +GPHR DL     D  +  + GS G+Q+ +++ + +
Sbjct: 233 DIREAFLTILNQNHKRDIFKKNTGVGPHRDDLKFYIND--MNASFGSQGQQRSLILSLKM 290

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           A   LI   T   PILLLD++ + LD  ++  L   + D   Q FMT T      +L   
Sbjct: 291 AEIALIKKVTEEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPPN 349

Query: 362 AKFMRISN 369
            K   + N
Sbjct: 350 LKTFLVKN 357


>gi|197302272|ref|ZP_03167331.1| hypothetical protein RUMLAC_00999 [Ruminococcus lactaris ATCC
           29176]
 gi|197298703|gb|EDY33244.1| hypothetical protein RUMLAC_00999 [Ruminococcus lactaris ATCC
           29176]
          Length = 370

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 158/359 (44%), Gaps = 32/359 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  +RNY  L + FD +  I  GDN  GKTNILEA+      +  R     D+ +
Sbjct: 12  IRSLRLKNYRNYDLLDMSFDPKTNILYGDNAQGKTNILEALYLSGTTKSHRGTKDRDMIQ 71

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +        +G+    D+ +K       S + + I+ + IR   EL   +   + 
Sbjct: 72  FGHDEAHLEMVVEKKGLTFQIDMHLK-----KNSPKGIAIDRIPIRKASELFGIVHFVFF 126

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I       RRRF+D  +  +D  +   + ++ R++  RN LL + Y   +   +
Sbjct: 127 SPEDLNIIKEGPAGRRRFIDLELSQLDKIYLSNLTNYNRIINQRNALLKDIYNHQNLAET 186

Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           ++    Q+AE G ++   R + I  ++ +I +         I   LTG   GK  +  C 
Sbjct: 187 LDIWDMQLAEYGTRVLERRQQFIEQVNGIISD---------IHYRLTG---GK--ERICL 232

Query: 243 LKEE------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVV 295
             E         + L   R  D   + T +GPHR D+   +    + I   GS G+Q+  
Sbjct: 233 SYESGTGGRSLEEALKRNRDRDLRMKSTSVGPHRDDIC--FLSGELDIRKFGSQGQQRTT 290

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            + + LA   L+       P+LLLD++ + LD+ ++N L   + DI + +  TG D+ V
Sbjct: 291 ALSLKLAEIELVKQMIKDTPVLLLDDVLSELDKSRQNYLLDSIHDIQTVVTCTGLDEFV 349


>gi|324989568|gb|EGC21514.1| recombination protein F [Streptococcus sanguinis SK353]
          Length = 364

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 163/372 (43%), Gaps = 16/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY    + F     +F+G N  GKTNILEAI FL+  R  R  S  D+  
Sbjct: 3   LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   +   +E   G   + I L  +     R  ++N +    + +    + +    
Sbjct: 63  FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+ + G ++   R++ +  L S   +  +   +N   + +    +L          L
Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLHQIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D  + +    +    GS G+ + +++ + LA 
Sbjct: 235 EETYRFSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362
            +LI + T   PILLLD++ + LD  ++  L   ++ DI  Q F+T T      +L +  
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNSRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350

Query: 363 KFMRISNHQALC 374
           K   I   Q + 
Sbjct: 351 KIFTIQQGQIMS 362


>gi|282863317|ref|ZP_06272376.1| DNA replication and repair protein RecF [Streptomyces sp. ACTE]
 gi|282561652|gb|EFB67195.1| DNA replication and repair protein RecF [Streptomyces sp. ACTE]
          Length = 376

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 158/358 (44%), Gaps = 22/358 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   +  D   T+FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARAEVPLDPGVTVFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R    +G     I+LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGA---ERAVVRAAVTQGERSQLIELEINPGRANRARVNRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD +V A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFL 232
              D S     +  +  +G ++   R+++I  L  L  +    V     P + L     +
Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYADVAPGGGP-VALEYRSSV 235

Query: 233 DGKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             +   S     L E+    L + RK +     TL+GPHR DL++          + S G
Sbjct: 236 GPEVGPSRTREELYEQVMAALAEARKQEIERGVTLVGPHRDDLVLGLRGMPAK-GYASHG 294

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           E     + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T
Sbjct: 295 ESWSYALALRLASYDLLRG-EGNEPVLVLDDVFAELDTRRRERLAELVAP-GEQVLVT 350


>gi|239637289|ref|ZP_04678276.1| DNA replication and repair protein RecF [Staphylococcus warneri
           L37603]
 gi|239597126|gb|EEQ79636.1| DNA replication and repair protein RecF [Staphylococcus warneri
           L37603]
          Length = 371

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 163/372 (43%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + +    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEQVTIDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F S +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FDSEYAKIEGELNYRHGTMPLTMFITKRGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G  + RRRF+D  +  I   +   +  ++ +++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPLIRRRFIDMELGQISAVYLNDLSQYQHILKQKNNYLKQLQIGNNTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
           +    +  Q AE  +K+ + R   I  L  L              L+L      KF   D
Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELEQLAQPIHAGITNEREALALKYLPSLKFSHQD 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           QS   + EE    L D  + +      L GPHR DL  +  +      +GS G+Q+   +
Sbjct: 236 QSESEMLEEILTLLNDNLQREKDRGVCLFGPHRDDLGFN-VNGMDAQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDH 353

Query: 357 SLNETAKFMRIS 368
            +   AK  RI+
Sbjct: 354 EIMNNAKLYRIN 365


>gi|78043999|ref|YP_361489.1| DNA recombination/replication protein RecF [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|123575248|sp|Q3A8P5|RECF_CARHZ RecName: Full=DNA replication and repair protein recF
 gi|77996114|gb|ABB15013.1| DNA recombination/replication protein RecF [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 353

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 157/346 (45%), Gaps = 21/346 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRNY  L + F     +  G NG GKTN++EAI +L  G+ FR    + + R G+
Sbjct: 6   LQLLNFRNYEELLIDFSPGKILIYGANGQGKTNLIEAIYYLVIGKSFRGKDNS-LIRFGA 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            S F   A++        + ++   +    ++  Q       ++  L   L      P  
Sbjct: 65  ES-FQIGAKISKNGQKTTLGVEYSVKGKFFLKNGQKQKSFSSILGNLKGVL----FTPDE 119

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             IF G    RR+ LD  +      +   +I +++++  +N LL + +   +   +   +
Sbjct: 120 PVIFFGFPANRRKALDLFLAQTSKTYLLNLIYYQKVLTNKNALLKQVWNVDNLIEAWNYK 179

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +AE G +I   R + +  L+ +I E         +   L  FL GK + S+     +  +
Sbjct: 180 LAEFGAEIIKEREKCLKILNDIINE---------LNAQLR-FLPGKIEASYKTSGADDKE 229

Query: 250 KLFDGRKM----DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           K+F+  K     +   ++ L GPHR DL      + + I  GS G++K  L+   L+ A 
Sbjct: 230 KIFELLKQKYTEEKDKKQALFGPHRDDLNFYVNGRDLKI-FGSQGQKKGALLLFKLSQAV 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            ++  +G  P++LLD++ +  D++KR AL         Q+F+T T+
Sbjct: 289 YMAKVSGEKPVVLLDDLYSEFDKEKREALEGFFLKYSDQVFITATE 334


>gi|257054093|ref|YP_003131925.1| recombination protein F [Saccharomonospora viridis DSM 43017]
 gi|256583965|gb|ACU95098.1| DNA replication and repair protein RecF [Saccharomonospora viridis
           DSM 43017]
          Length = 390

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 170/377 (45%), Gaps = 37/377 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +++FR++  + L      T+ VG NG GKTN+LEAI ++S     R A+ A + R
Sbjct: 3   LRHLQVTDFRSWEHVDLPLAQGPTVLVGPNGQGKTNLLEAIGYISTLSSHRVATDAPLVR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G        A V EG E    ++++LE    R+ R  +IN   +    ++   LR    
Sbjct: 63  HGCDRALVRAAVVNEGRE----LTVELEIAPGRANRA-RINRGAVGKPRDVLGILRTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL------------ 173
            P    +  G   ERRRFLD ++    PR+     +++R++R RN LL            
Sbjct: 118 SPEDLALVRGDPSERRRFLDDLLVQRAPRYAGVRSEYDRVLRQRNALLKSVGRAGGRRGA 177

Query: 174 ---TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPH---I 224
              T+ Y  S+     +  +A  G ++  AR+ ++  L   +      V  ++ P     
Sbjct: 178 REETDPYALST-LQVWDNHLASAGAELLAARLNLVAELGPYVASSYADVAPDSRPARIAY 236

Query: 225 KLSLTGFL-------DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
           + SL G L       DG  + S   L E   + L + R+ +     +LIGPHR DL +  
Sbjct: 237 RSSLGGALPEGWGTPDGP-EASTEQLGEILLRVLGEVRETELERGVSLIGPHRDDLEL-M 294

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
             +A    + S GE     + + LA  RL+ N +G  P+LLLD++ A LD  +R  L  +
Sbjct: 295 LGEAPAKGYASHGESWSFALALRLASYRLLRNESGGEPVLLLDDVFAELDSRRRARLAEV 354

Query: 338 VTDIGSQIFMTGTDKSV 354
            T     +     D+ V
Sbjct: 355 ATKAEQVLVTAAVDEDV 371


>gi|23097459|ref|NP_690925.1| recombination protein F [Oceanobacillus iheyensis HTE831]
 gi|51316469|sp|Q8EU85|RECF_OCEIH RecName: Full=DNA replication and repair protein recF
 gi|22775682|dbj|BAC11960.1| DNA repair and genetic recombination [Oceanobacillus iheyensis
           HTE831]
          Length = 369

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 168/371 (45%), Gaps = 16/371 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L ++ +RNY  L + FD Q  + +G+N  GKTN++EAI  LS  R  R     ++ +
Sbjct: 3   IEKLELTNYRNYDQLEIAFDDQINVIIGENAQGKTNLMEAIYVLSFARSHRTPREKELIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   +A++EG     + SI L+       +  ++N +    + +    + +    
Sbjct: 63  -----WDKDYAKIEGRITKRNQSIPLQISITSKGKKAKVNHLEQHRLSDYIGSVNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P    I  G    RRRF+D  +  I P +   +  ++++++ RN LL +       D++ 
Sbjct: 118 PEDLTIVKGAPQIRRRFMDMELGQIQPTYIYHLAQYQKVLKQRNHLLKQLQRKPNSDTTM 177

Query: 183 CSSIEAQMAELGVKINIAR----VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
              +  Q+ E    I + R    +E++   +  I   + +E    +++  +  ++   D 
Sbjct: 178 LEVLTDQLIE-HASILLERRFIYLELLRKWAQPIHRGISRE-LEQLEIQYSPSIEVSEDA 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   +   Y  K  + ++ +     TL GPHR DLI     K +   +GS G+Q+   + 
Sbjct: 236 NKEKIGNIYQMKFAEVKQKEIERGTTLAGPHRDDLIFFVNGKDVQ-TYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           I LA   LI    G  PILLLD++ + LD+ +++ L   +         T + + +    
Sbjct: 295 IKLAEIELIYQEVGEYPILLLDDVLSELDDYRQSHLLNTIQGKVQTFVSTTSVEGIHHET 354

Query: 359 NETAKFMRISN 369
            + A+  R+++
Sbjct: 355 LQQAELFRVTD 365


>gi|138893683|ref|YP_001124136.1| recombination protein F [Geobacillus thermodenitrificans NG80-2]
 gi|196249897|ref|ZP_03148593.1| DNA replication and repair protein RecF [Geobacillus sp. G11MC16]
 gi|166220711|sp|A4IJ87|RECF_GEOTN RecName: Full=DNA replication and repair protein recF
 gi|134265196|gb|ABO65391.1| RecF [Geobacillus thermodenitrificans NG80-2]
 gi|196210773|gb|EDY05536.1| DNA replication and repair protein RecF [Geobacillus sp. G11MC16]
          Length = 372

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 161/368 (43%), Gaps = 25/368 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L ++ +RNY    L FD    I +G+N  GKTN++EAI  L+  +  R  +  D+ R   
Sbjct: 6   LTLTNYRNYEHETLSFDQGVNIILGENAQGKTNMMEAIYVLAMAKSHRTTNDKDLIR--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +   +A++EG       S+ LE   ++  +  RC   N +  + + +   HL +    
Sbjct: 63  --WNEDYAKIEGRAEKRSGSLALELTISKKGKKARC---NHIEQQRLSQYVGHLNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RRRF+D  +  + P +   +  +++L++ RN  L         D + 
Sbjct: 118 PEDLNLVKGSPQVRRRFIDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMMQAREQHDEAV 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIM----EYVQKENFPHIKLSLTGFLDGKFDQ 238
              +  Q+  L  KI + R + +  L    M    E  +     HI+   +  +D     
Sbjct: 178 LDVLTEQLMVLAAKITLRRRQFLALLEQWAMPIHHEISRGAERLHIRYEPS--VDVSEKA 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + E Y++     R+ +     TL+GPHR D+      K +    GS G+Q+   + 
Sbjct: 236 ELSRIVEAYSETFAAMREREIQRGTTLVGPHRDDIAFIVNGKNVQ-TFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFD 356
           + LA   LI +  G  PILLLD++ + LD+ ++  L   +     Q F+T T  D    D
Sbjct: 295 VKLAEIELIFSELGDYPILLLDDVLSELDDFRQTHLLDAIRK-KVQTFVTTTSIDGIKHD 353

Query: 357 SLNETAKF 364
            + E A +
Sbjct: 354 LIQEAAIY 361


>gi|145294046|ref|YP_001136867.1| recombination protein F [Corynebacterium glutamicum R]
 gi|166220708|sp|A4Q9S2|RECF_CORGB RecName: Full=DNA replication and repair protein recF
 gi|140843966|dbj|BAF52965.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 394

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 177/393 (45%), Gaps = 45/393 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L + ++R++  L++  +   T+F+G NG GKTNI+EAI +L+     R +S A +
Sbjct: 1   MHIRSLELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLSSHRVSSDAPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R  + +   S  A  +G E  A + IK    +  S     +N   +R   EL   ++  
Sbjct: 61  VRAHAENARVSAVAVNQGRELAAHLLIKPHAANQAS-----LNRTKVRTPRELLGVVKTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174
              P    +  G   ERRR+LD ++    PR      D++++++ RN LL          
Sbjct: 116 LFAPEDLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQRNALLKTATIALRRG 175

Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME---YVQKENFPH---- 223
               EG    S   + + Q+A LG ++  AR  ++N L   I E    +  E+ P     
Sbjct: 176 YGTEEGAAALSTLDTWDGQLARLGAEVMAARFALLNELGPKIYEAYTTIAPESRPAAVNY 235

Query: 224 ---IKLSLTGFLDGKFDQSF--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
              I   L+ F   +FD       L  E A K    R+ +     +L+GPHR D+ +   
Sbjct: 236 KTTIDQGLSQF--SEFDAGIIEATLLTELAAK----RQREIERGSSLVGPHRDDVDLMLG 289

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFAPILLLDEISAHLDEDKRNALFRI 337
           D+       S GE     + + +A   L+ S+ T   PIL+LD++ + LD  +R  L  I
Sbjct: 290 DQPAK-GFASHGETWSFALSLRIAEFNLLKSDDTD--PILILDDVFSELDAGRRQKLVGI 346

Query: 338 VTDIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
             ++  Q+ +T    +V D L E  K +  + H
Sbjct: 347 AQEV-EQVLITA---AVHDDLPENLKKVLTAQH 375


>gi|320009753|gb|ADW04603.1| DNA replication and repair protein RecF [Streptomyces flavogriseus
           ATCC 33331]
          Length = 376

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 159/360 (44%), Gaps = 22/360 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R    +G     I+LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGAE---RAVVRAAVTQGERSQLIELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFL 232
              D S     +  +  +G ++   R+++I  L  L  +    V     P + L     +
Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYADVAPGGGP-VTLEYRSSV 235

Query: 233 DGKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             + + +     L E+    L   RK +     TL+GPHR DL++          + S G
Sbjct: 236 GDEVEPARTREELYEQVMAALVQARKQEIERGVTLVGPHRDDLVLGLRGMPAK-GYASHG 294

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           E     + + LA   L+  T G  P+L+LD++ A LD  +R  L  +V   G Q+ +T  
Sbjct: 295 ESWSYALALRLASYDLL-RTEGNEPVLVLDDVFAELDARRRERLAELVAP-GEQVLVTAA 352


>gi|228994211|ref|ZP_04154111.1| DNA replication and repair protein recF [Bacillus pseudomycoides
           DSM 12442]
 gi|228765663|gb|EEM14317.1| DNA replication and repair protein recF [Bacillus pseudomycoides
           DSM 12442]
          Length = 375

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 172/380 (45%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   IKELQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   + +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDYGKIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQRLSQYIGEMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGTKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL     DK + +  GS G+Q+   
Sbjct: 234 SMGLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNDKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L + AK + ++N    C
Sbjct: 352 HETLKQ-AKTIHVTNGTVDC 370


>gi|228995400|ref|ZP_04155072.1| DNA replication and repair protein recF [Bacillus mycoides
           Rock3-17]
 gi|229003014|ref|ZP_04160873.1| DNA replication and repair protein recF [Bacillus mycoides Rock1-4]
 gi|228758242|gb|EEM07428.1| DNA replication and repair protein recF [Bacillus mycoides Rock1-4]
 gi|228764353|gb|EEM13228.1| DNA replication and repair protein recF [Bacillus mycoides
           Rock3-17]
          Length = 375

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 170/376 (45%), Gaps = 16/376 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   IKELQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   + +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDYGKIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQRLSQYIGEMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240
                 Q+ E G KI   R E ++ L        +        +++     +D       
Sbjct: 178 LDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDL 237

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +KE Y +     ++ +     TLIGPHR DL     DK + +  GS G+Q+   + + 
Sbjct: 238 SKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNDKNVQV-FGSQGQQRTTALSLK 296

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSL 358
           LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D    ++L
Sbjct: 297 LAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIEHETL 355

Query: 359 NETAKFMRISNHQALC 374
            + AK + ++N    C
Sbjct: 356 KQ-AKTIHVTNGTVDC 370


>gi|323341104|ref|ZP_08081352.1| recombination protein F [Lactobacillus ruminis ATCC 25644]
 gi|323091525|gb|EFZ34149.1| recombination protein F [Lactobacillus ruminis ATCC 25644]
          Length = 386

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 163/360 (45%), Gaps = 32/360 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  FRNY   +L F     + +G+N  GKTN+LE+I  L+  +  R  +  ++
Sbjct: 1   MRLSNLKLKNFRNYHETKLEFSPNINVLIGENAQGKTNLLESIYVLAMTKSHRTTNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S F     +EG+      +++L     +  +  ++N +    + +    L +  
Sbjct: 61  IEFSEKSAF-----LEGIVEKKTGNLRLSLSLSKKGKTARVNSLETPRLSQYIGKLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180
             P    +  G    RRRF+D     ID  +   +  +  ++R RN    +L T+   D 
Sbjct: 116 FSPEDLSLVKGSPAVRRRFIDMEFGQIDAVYLYELTRYRTILRDRNVYLKQLQTKQSTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSL--IME---YVQKENFPHIKLSLTGFLDG- 234
            +   +  Q+A+ G KI + R+E +  L +   I+      QKEN    K   T  +D  
Sbjct: 176 VYLEVLTEQLAKSGAKIILKRLEFLEELENYAKILHADITQQKENLT-FKYKCTASIDDL 234

Query: 235 KFDQSFCA--LKEEYA----KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
           + +Q      LKE +     K++F G         TLIGPHR D+      K +   +GS
Sbjct: 235 EMNQDAIEIRLKETFETIVDKEIFQG--------TTLIGPHRDDVSFKVNGKNVQ-TYGS 285

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+Q+   + + LA   L+   TG  P+LLLD++ + LD +++  L + + D   Q F+T
Sbjct: 286 QGQQRTTALAVKLAEIDLMRAKTGEYPVLLLDDVLSELDGERQTHLLKAIQD-KVQTFLT 344


>gi|227485760|ref|ZP_03916076.1| possible recombination protein F [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236315|gb|EEI86330.1| possible recombination protein F [Anaerococcus lactolyticus ATCC
           51172]
          Length = 367

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 161/355 (45%), Gaps = 31/355 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  FRNY    + F+    IF+GDN  GKTN+LE+  +L+    F++    D+ +
Sbjct: 3   IQDIKLYNFRNYFYESVNFNESTNIFIGDNAQGKTNLLESCYYLANATSFKKLRDKDIIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G          + G         K+  R D + + + +N+V  +   +L    R+    
Sbjct: 63  FGQEKM-----EISGTIRKGRSFKKVLIRVDGTDKNIFVNEVEYKRNKDLKSLFRLVLFT 117

Query: 127 PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSW 182
           P  ++ I  G ++ RR  LD ++ +ID  + R   D+++++  RN+LL      YF    
Sbjct: 118 PEDLNIIKEGPNL-RRELLDEIIASIDFSYARVKKDYDKILFARNKLLKNRNSSYF-KEQ 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             + +  + + G KI  +R++ +      + EY Q  +F +         DGK       
Sbjct: 176 LDAFDKSLVKEGYKIYKSRIKFV----KFVEEYAQ--DFQN------ALTDGKEKLEIDY 223

Query: 243 LK-------EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           L        +EY KK  + R+ D     T  G HR D+I+    K  T    S G+Q+  
Sbjct: 224 LPDISAESLDEYYKKFLEKREDDLRYLSTQAGVHRDDIIIKINGKN-TRLFASQGQQRSA 282

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           ++ I LA  +L+   +G   ++LLD++ + LDE +   L   ++D  + I  T T
Sbjct: 283 IINIKLAEVKLVRQISGDRAVILLDDVFSELDETRSKFLLENLSDYQTIITATNT 337


>gi|189423085|ref|YP_001950262.1| recombination protein F [Geobacter lovleyi SZ]
 gi|226737802|sp|B3E8N9|RECF_GEOLS RecName: Full=DNA replication and repair protein recF
 gi|189419344|gb|ACD93742.1| DNA replication and repair protein RecF [Geobacter lovleyi SZ]
          Length = 368

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 166/368 (45%), Gaps = 22/368 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +K + + ++RN      +  A+H T+  G NG GKTN LE++  L   R FR A   D+ 
Sbjct: 3   LKQVWLEQYRNIQKA-CIQPARHLTVLYGRNGQGKTNFLESLYLLGNARPFRAAKVPDLI 61

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             GS S     A V G+   A +   +    + S R + I+D  +    +L+  L +   
Sbjct: 62  SHGSRS-----AAVRGLVLAAGVESTIVLHVENSTRRVTIDDKAVHRAADLHGKLAVVVF 116

Query: 126 VPSMDRIFSGLSME-RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            P  D     L  E RRR+LDR ++A D         + R+++ RN LL       +   
Sbjct: 117 SPD-DTAMVKLGPETRRRYLDRSLYASDAAFLSDYHTYYRILKQRNALLKTN--QQAGLD 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               Q+A  G+++   R    + L+ L+ +  Q+      K+S+    D       C  +
Sbjct: 174 LWTEQLATAGIRLMQHRQHYTSRLNQLLQQKYQQIAGEQEKVSVVYQPD-----VICTAE 228

Query: 245 EEYAKKLFD----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
           E   + L +      + D   + T  GPHR DL+    D+ +  + GS G+Q+  ++ + 
Sbjct: 229 ENGTELLLNVFRNQHEQDLRYKSTGRGPHRDDLLFSIGDRPLK-SFGSQGQQRSFVLALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359
           +A    +  T G  P+LLLD+I++ LD ++   L   V     Q+ +T TD + F   L 
Sbjct: 288 MAELDHLQETFGEMPLLLLDDIASELDRERMTNLLSYVRQREVQVLITTTDVTPFLPVLQ 347

Query: 360 ETAKFMRI 367
           + +K  R+
Sbjct: 348 QDSKLFRV 355


>gi|288554609|ref|YP_003426544.1| recombination protein F [Bacillus pseudofirmus OF4]
 gi|288545769|gb|ADC49652.1| recombination protein F [Bacillus pseudofirmus OF4]
          Length = 371

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 162/355 (45%), Gaps = 24/355 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I +FRNY  + L FD +  +F+G+N  GKTN +EAI  L+  +  R +   ++ R
Sbjct: 3   IKSLLIRQFRNYERVELEFDERMNVFIGENAQGKTNTIEAIYVLALAKSHRTSKDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   FA+V+G        I+L+       + +++N +  R + E    + +    
Sbjct: 63  -----WNDEFAKVQGQVQRQSGPIELDLVISTKGKKVKLNGLEQRKLSEYVGAVNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183
           P    +  G    RRRF+D  +  I P +   +  ++++++ RN LL +   G       
Sbjct: 118 PEDLNLVKGSPQLRRRFIDMELGQISPVYLHHLGLYQKVLQQRNFLLKDLQIGKGSKDML 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENFPHIKLSLTGFLDGKFDQ 238
             +  Q+ EL V+I   R   +  L     E  +     KE    I       L+   + 
Sbjct: 178 DILTDQLIELAVQITKRRFVFLGQLQKWAEEIHRDISRAKETLKIIYKPSCDVLE---EM 234

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVV 295
               +KE + +  ++ +K   ++R  TL GPHR DL  +V+  D      +GS G+Q+  
Sbjct: 235 DMPKMKEVFIET-YENKKQREIARGVTLFGPHRDDLGFLVNEHD---VQTYGSQGQQRTT 290

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            + + LA   LI    G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 291 ALSVKLAEIELIHAEVGEYPILLLDDVLSELDDYRQTHLLHTIGQ-RVQTFVTTT 344


>gi|227873173|ref|ZP_03991464.1| recombination protein RecF [Oribacterium sinus F0268]
 gi|227841004|gb|EEJ51343.1| recombination protein RecF [Oribacterium sinus F0268]
          Length = 360

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 165/357 (46%), Gaps = 28/357 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  +RN   L+L    ++ I  GDN  GKTN+LEAI F S G+ FR     ++  
Sbjct: 3   IESIELQNYRNIEKLKLPLGEKNNILYGDNAQGKTNLLEAIFFGSTGKSFRFCKDKELIH 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +      + +G+    DI +K         + + I+   ++   EL     I   
Sbjct: 63  FGAEEAHLKMILKKKGISHRIDIHLK-----KNKSKGVAIDGFPVKKSSELFGLGNIIIF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    +      ERRRF+D  +  +D  +   +  + ++++ RN+LL E YF      +
Sbjct: 118 SPEDLSLIKNGPKERRRFIDLELCQLDKIYLYHLSMYNKVLQQRNKLLKELYFRPKLEET 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCAL 243
           + A   EL     +   +M+ +L    +E ++K  EN       + G + GK ++   + 
Sbjct: 178 LFAWDEEL-----VKHGKMVISLRRDFVENLRKKVEN-------IHGEISGKREELLLSY 225

Query: 244 KEEYAKKLFD-----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLV 297
           +E  +++ F       R+ +   + TL GPHR DL   +      I H GS G+Q+   +
Sbjct: 226 EENVSEENFSLQLEKNREAEKKQQTTLSGPHRDDL--SFQINGQDIRHFGSQGQQRTAAL 283

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            + LA   L+       PILLLD++ + LD+ ++N L   + ++ S I  TG ++ V
Sbjct: 284 SLKLAEIDLVRERIQDNPILLLDDVFSELDQKRQNFLLEQLGNLQSLITCTGLEELV 340


>gi|294496879|ref|YP_003560579.1| DNA replication and repair protein RecF [Bacillus megaterium QM
           B1551]
 gi|295702246|ref|YP_003595321.1| DNA replication and repair protein RecF [Bacillus megaterium DSM
           319]
 gi|294346816|gb|ADE67145.1| DNA replication and repair protein RecF [Bacillus megaterium QM
           B1551]
 gi|294799905|gb|ADF36971.1| DNA replication and repair protein RecF [Bacillus megaterium DSM
           319]
          Length = 372

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 161/352 (45%), Gaps = 17/352 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + ++ +RNY    + F+ +  + +G+N  GKTN++E+I  LS  +  R ++  ++ +
Sbjct: 3   IKEITLTNYRNYTKTTIPFENKVNVILGENAQGKTNVMESIFVLSMAKSHRTSNDKELIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +      VE   G   + + + T+  ++    + N +  + + +    +      
Sbjct: 63  WDC-EYAKLSGIVEKHRGPVTLDLVISTKGKKA----KYNHIEQKKLSQYIGSINTVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RR+F+D  +  + P +   +  ++++++ RN+ L    T+   D S 
Sbjct: 118 PEDLNLVKGSPQVRRKFIDMEIGQVSPVYMHDLSRYQKILQQRNQYLKQLQTKKQTDLSL 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFDQS 239
              +  Q++E+  KI   R E +  L     E + K    +   +K+     +D   D  
Sbjct: 178 LDVLTLQLSEMAAKILKKRFEFLQLLQQW-AEPIHKGISRDLETLKIEYKNSIDVSEDAD 236

Query: 240 FCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
              + E Y +K FD  K   + R  TL GPHR DL+  Y ++      GS G+Q+   + 
Sbjct: 237 LSKMLEAYHQK-FDKIKSREIDRGVTLAGPHRDDLLF-YVNEKDVQTFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T
Sbjct: 295 LKLAEIELIHQEVGEYPILLLDDVLSELDDFRQSHLLNTIQG-KVQTFVTTT 345


>gi|320162555|ref|YP_004175780.1| DNA replication and repair protein RecF [Anaerolinea thermophila
           UNI-1]
 gi|319996409|dbj|BAJ65180.1| DNA replication and repair protein RecF [Anaerolinea thermophila
           UNI-1]
          Length = 413

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 169/385 (43%), Gaps = 39/385 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+++ FR +A L +    +  + VG+N  GKT++LEAI +L+       +    +
Sbjct: 1   MHLTHLSLTHFRLFARLDMELPRRTLLLVGENAQGKTSLLEAIYYLATFTSLHASLDRQI 60

Query: 65  TRIGSPSFFSTFARVEG---MEGLA---DISIKLETR---DDRSVRCLQINDVVIRVVDE 115
               +       AR+ G    EG A   ++ + LE          R   + D V R   E
Sbjct: 61  VSFAAAREPLAVARIVGDFEREGRAHRLEVRLILEANGGFPPARFRKEILLDGVKRTAQE 120

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RL 172
               L     +P M  I  G   ERRR+L+  +    P + + + D+ R +  RN   +L
Sbjct: 121 ATGALTAVMFLPDMTHILDGSPEERRRYLNLALAQAVPGYAQALTDYTRALEQRNALLKL 180

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL-------------IMEYV--- 216
           L E   D +  +  +  +AE G  I  AR+  I  L  L             ++++V   
Sbjct: 181 LQERSADPAQLAYWDTLLAEKGAFILHARIAAIAELERLAARIHNRLTGGTEVLQFVYLP 240

Query: 217 QKENFPHIKLS-----LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
             +  PH +       LT    G F  S   L+E + ++L D R  +     T IGPHR 
Sbjct: 241 AYDPLPHPEGQYALPILTPMDRGGF--SLTQLREGFLQRLSDLRSEEIARGVTTIGPHRD 298

Query: 272 DLIVDYCDKAITIA-HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
           +L   +    + +  +GS G+ +  L+ + +A AR +   TG  PILLLDEI A LD+ +
Sbjct: 299 EL--RFLSNGVDLGDYGSRGQLRTTLLSLKMAEARWMKERTGEFPILLLDEILAELDDRR 356

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVF 355
           R  L   + D   Q  +T TD  +F
Sbjct: 357 RADLLDALDDF-EQAVLTTTDLKLF 380


>gi|71280559|ref|YP_266785.1| DNA replication and repair protein RecF [Colwellia psychrerythraea
           34H]
 gi|123634297|sp|Q48AS5|RECF_COLP3 RecName: Full=DNA replication and repair protein recF
 gi|71146299|gb|AAZ26772.1| DNA replication and repair protein RecF [Colwellia psychrerythraea
           34H]
          Length = 377

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 168/354 (47%), Gaps = 30/354 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L    FRN +S+ +    +   F+G+NG GK+++LEA+ FL  G+ FR       +++  
Sbjct: 6   LTTYNFRNLSSVAIDLHPKLNFFIGNNGSGKSSLLEALFFLGHGKSFR------TSKVEH 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            + + T   V  ++ + D+ + L       V  ++IN      + EL K++ +  + P  
Sbjct: 60  LACYETDNFVVSIKDVNDLQLGLSKNLQTGVTLIKINGERHARLSELAKNIAVQIVTPES 119

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-------TEGYFDSSW 182
            ++F G   ERRRF++  +F +     ++  +F R+++ RN  +       T  Y+   +
Sbjct: 120 FKLFFGGPKERRRFIELGMFHVKHDSSKQWREFNRVLKQRNACIRHNLDKATFDYWTGLF 179

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFDQSFC 241
           C  +  Q+AE+       R + I  L S  + Y  +   P+I   +T  +L G       
Sbjct: 180 CQ-LSEQVAEV-------RSQYITNLISE-LPYWLEILLPNIADKVTVQYLQG------W 224

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
             K+     L D  + +     ++ G H+ D+      +A+  +  S G+QK+ L+ +  
Sbjct: 225 PQKKNLMDSLNDSHEREQAFGYSIYGAHKFDVKFLIAKQALE-SQLSRGQQKLFLLALTF 283

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           A A+LI+      PILL+D+I A LD + R +L + ++ +  Q+ +T  ++ V 
Sbjct: 284 AQAKLIARVNRVKPILLIDDIGAELDINSRESLSQALSILDCQVIITAIEEGVL 337


>gi|89074700|ref|ZP_01161158.1| recombination protein F [Photobacterium sp. SKA34]
 gi|89049464|gb|EAR55025.1| recombination protein F [Photobacterium sp. SKA34]
          Length = 360

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 166/363 (45%), Gaps = 17/363 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN AS  L   A     VG NG GKT++LEAI +L  GR FR    + V R   
Sbjct: 6   LMVHDFRNIASCDLALAAGFNFLVGPNGSGKTSVLEAIHYLGHGRSFRSHLTSRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              F    RV   +    + I +  + D +   ++I     + + +L + L +  + P  
Sbjct: 66  AELF-IHGRVVDNQTQLMLPIGINKKRDGTTD-VKIAGESNQKLAQLAQILPLQLITPEG 123

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187
             +  G    RR F+D  VF ++P+        +RL + RN LL     Y + S+    +
Sbjct: 124 FDLLIGGPKYRRAFIDWGVFHVEPKFYHAWARLKRLTKQRNALLKTARSYRELSYW---D 180

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            ++A L  +I++ R + I+A+     E  Q    P   + L GF  G   ++       Y
Sbjct: 181 QELALLAEEISVWRKDYISAVKEKAAEIFQV-FLPEFDIQL-GFYRGWEKET------PY 232

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
           A+ L    + D     T+ GPH++DL +      +     S G+ K+++  + LA    +
Sbjct: 233 AELLQRNFERDCQLGYTVSGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQGLHL 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366
           +  TG   I L+D+ ++ LD  +R  L + + +  +Q+F++  +D  V D L+E  K   
Sbjct: 292 TEATGKQCIYLIDDFASELDSQRRALLAQRLKETNAQVFISAISDDQVADMLDENGKLFH 351

Query: 367 ISN 369
           + +
Sbjct: 352 VEH 354


>gi|227891672|ref|ZP_04009477.1| recombination protein F [Lactobacillus salivarius ATCC 11741]
 gi|227866475|gb|EEJ73896.1| recombination protein F [Lactobacillus salivarius ATCC 11741]
          Length = 379

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 164/379 (43%), Gaps = 38/379 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRNY  + + F  Q  + +G N  GKTN+LE+I  L+  R  R ++  ++     
Sbjct: 6   LELKHFRNYEDVNVAFSPQVNVLIGKNAQGKTNLLESIYVLAMARSHRTSNDREMV---- 61

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F    A + G       + KLE    R  +  ++N +    + +    L +    P  
Sbjct: 62  -TFKKDAALIRGEVHQRLGNTKLELLISRKGKKAKVNYLEKARLSQYIGQLNVILFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D     ID  +   + ++  ++R RN+ L    T+   D  +   
Sbjct: 121 LALVKGAPSVRRRFIDMEFGQIDALYLHALTEYRAVLRQRNKYLKELQTKKATDKVYLEI 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK------ENFPHIKLSLTGFLDGKFDQS 239
           +  Q++E G +I   R+E +  L     +Y  K      +   H++      L     +S
Sbjct: 181 LSEQLSESGSQIIFKRLEFLQELE----KYADKLHNQITQGKEHLQFQYESTLKEYQGKS 236

Query: 240 FCALK----EEYA----KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
              LK    E+Y     K++F G         TL+GPHR D+     DK + + +GS G+
Sbjct: 237 VLELKQSLVEQYKTMMDKEIFQG--------TTLLGPHRDDVRFMLNDKNVQV-YGSQGQ 287

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           Q+   + + LA   L+   T   PILLLD++ + LD  ++  L + + +   Q F+T   
Sbjct: 288 QRTAALSVKLAEIDLMKEKTHEYPILLLDDVLSELDGARQTHLLKTIQN-KVQTFLTTPG 346

Query: 352 KS-VFDSLNETAKFMRISN 369
            S V   L    K  RI N
Sbjct: 347 LSDVAQQLINKPKIFRIDN 365


>gi|126432617|ref|YP_001068308.1| recombination protein F [Mycobacterium sp. JLS]
 gi|166220716|sp|A3PSE0|RECF_MYCSJ RecName: Full=DNA replication and repair protein recF
 gi|126232417|gb|ABN95817.1| DNA replication and repair protein RecF [Mycobacterium sp. JLS]
          Length = 380

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 171/362 (47%), Gaps = 33/362 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +++FR++A   L  +   T+FVG NG GKTN++EA+ + +     R AS A + R
Sbjct: 3   VRHLTLTDFRSWARADLELEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+P +  ST    EG E    +++ LE    R+ +  ++N   +R   E+   LR    
Sbjct: 63  AGAPRAVVSTIVVNEGRE----LAVDLEITTGRANKA-RLNRSPVRSPREVLGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FDS 180
            P    +  G   ERRR+LD +     P       D++R++R R  LL          D 
Sbjct: 118 APEDLALVRGDPGERRRYLDELATTRRPSIAGVRADYDRVIRQRTALLKSAAGARYRGDR 177

Query: 181 SWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
           S   ++   +  +A  G  +  AR ++++ L+  + E   +   P  + +       ++ 
Sbjct: 178 SVLETLDVWDGHLAAHGALLMAARADLVHHLAPEV-EKAYQLLAPGSRPAAI-----RYR 231

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHGS 288
            S  A +++ + + ++   +D+M+RR          L+GPHR DL +   D+ +   + S
Sbjct: 232 TSIDA-EDDVSAEYYEAALLDAMTRRRDAELERGVCLVGPHRDDLELRLGDQ-MAKGYAS 289

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE   + + + LA   L+  T G  P+LLLD++ A LD  +R AL  +      Q+ +T
Sbjct: 290 HGESWSMALSLRLAAYELL-RTDGSDPVLLLDDVFAELDAARRRALAEVAAS-AEQVLVT 347

Query: 349 GT 350
             
Sbjct: 348 AA 349


>gi|120596836|ref|YP_961410.1| recombination protein F [Shewanella sp. W3-18-1]
 gi|166221867|sp|A1RDX9|RECF_SHESW RecName: Full=DNA replication and repair protein recF
 gi|120556929|gb|ABM22856.1| DNA replication and repair protein RecF [Shewanella sp. W3-18-1]
 gi|319424420|gb|ADV52494.1| DNA replication and repair protein RecF [Shewanella putrefaciens
           200]
          Length = 360

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 168/362 (46%), Gaps = 25/362 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LNI  FRN    +L+      +  G NG GKT+ILEAI FL  GR FR      V    +
Sbjct: 6   LNIEAFRNIQFAQLIPAPGINVIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVINNDN 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA +    G + I ++     +  V+   I+   ++ +  L + L I  + P S
Sbjct: 66  DK-LTLFATLNLARGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSI 186
              +F G    RR+F+D   F  DP+      +  R+++ RN+LL  G  Y    +    
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHADPQFYGAWTNVRRVLKQRNQLLRNGAVYTHIQFWDQE 180

Query: 187 EAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             + AE   +I    V+ +N  L  +I E++   +   +K+S T   D K D  F  L E
Sbjct: 181 FVRYAEQVTEIRNHYVDSLNGLLKGIIGEFLPSVD---VKVSFTRGWDSKTD--FAELLE 235

Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y++ L  G         T+ GPH++DL +   +     A  S G+ K+++  + +A  
Sbjct: 236 NQYSRDLATG--------HTVSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363
           +L+        I L+D++ + LD   R  L + +TD G+Q+F+T  D  ++ DSL+    
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPN 346

Query: 364 FM 365
            M
Sbjct: 347 RM 348


>gi|297621405|ref|YP_003709542.1| putative DNA replication and repair protein recF [Waddlia
           chondrophila WSU 86-1044]
 gi|297376706|gb|ADI38536.1| putative DNA replication and repair protein recF [Waddlia
           chondrophila WSU 86-1044]
          Length = 346

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 161/356 (45%), Gaps = 23/356 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++K L +  FR+Y   +  F  Q+ + +G N  GKT ILEAI  L  GR FR  +  ++
Sbjct: 1   MQVKALLLRNFRSYEKAQFTFGPQNNLIIGPNARGKTTILEAIYLLITGRSFRSRNLDEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G   F+     VE +    +I   +    ++  R +  N    R + +L   L+ + 
Sbjct: 61  VREGESGFY-----VEALYENQEIDHSIRFIYEKRQRQIYTNRHPCRSLSDLIGQLQGAL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           ++P   ++  G    RR FLD  +  ++P +   +  + R M+ RN LL     +     
Sbjct: 116 MLPDDVQLVKGAPSRRREFLDLQLAQMNPLYVHHLTRYSRAMQQRNTLLKAQ--NEQAID 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFDQSFC 241
             E +MA  G  +   R  +++ L+      VQ       +LSL   T  LD     S  
Sbjct: 174 LFEKEMAASGAYLIAERKRIVDLLAQDCAR-VQD------RLSLGKETVSLDYLAKHSPE 226

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            L E+Y K     RK +     +LIGPH  DL +   D+   +   S G++K +   +  
Sbjct: 227 NLSEQYEKM----RKREMKMGFSLIGPHLDDLTLKLGDREARL-FASEGQKKSLTTALKF 281

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           A    ++  +   P++L+D++   LD  +R  L  ++ D  SQ+F+T T+   F S
Sbjct: 282 AEWIQLNTHSDSVPLMLIDDVGVSLDGGRRERLISLL-DTFSQVFVTSTEPLNFHS 336


>gi|301300481|ref|ZP_07206680.1| DNA replication and repair protein RecF [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851928|gb|EFK79613.1| DNA replication and repair protein RecF [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 379

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 164/379 (43%), Gaps = 38/379 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRNY  + + F  Q  + +G N  GKTN+LE+I  L+  R  R ++  ++     
Sbjct: 6   LELKHFRNYEDVNVAFSPQVNVLIGKNAQGKTNLLESIYVLAMARSHRTSNDREMV---- 61

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F    A + G       + KLE    R  +  ++N +    + +    L +    P  
Sbjct: 62  -TFKKDAALIRGEVHQRLGNTKLELLISRKGKKAKVNHLEKARLSQYIGQLNVILFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D     ID  +   + ++  ++R RN+ L    T+   D  +   
Sbjct: 121 LALVKGAPSVRRRFIDMEFGQIDALYLHTLTEYRAVLRQRNKYLKELQTKKATDKVYLEI 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK------ENFPHIKLSLTGFLDGKFDQS 239
           +  Q++E G +I   R+E +  L     +Y  K      +   H++      L     ++
Sbjct: 181 LSEQLSESGSQIIFKRLEFLQELE----KYADKLHNQITQGKEHLQFQYESTLKEYQGKN 236

Query: 240 FCALK----EEYA----KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
              LK    E+Y     K++F G         TL+GPHR D+     DK + + +GS G+
Sbjct: 237 VVELKQSLIEQYKTMMDKEIFQG--------TTLLGPHRDDVRFMLNDKNVQV-YGSQGQ 287

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           Q+   + + LA   L+   T   PILLLD++ + LD  ++  L + + +   Q F+T   
Sbjct: 288 QRTAALSVKLAEIDLMKEKTHEYPILLLDDVLSELDGARQTHLLKTIQN-KVQTFLTTPG 346

Query: 352 KS-VFDSLNETAKFMRISN 369
            S V   L    K  RI N
Sbjct: 347 LSDVAQQLINKPKIFRIDN 365


>gi|167755162|ref|ZP_02427289.1| hypothetical protein CLORAM_00667 [Clostridium ramosum DSM 1402]
 gi|237733415|ref|ZP_04563896.1| recombination protein F [Mollicutes bacterium D7]
 gi|167705212|gb|EDS19791.1| hypothetical protein CLORAM_00667 [Clostridium ramosum DSM 1402]
 gi|229383450|gb|EEO33541.1| recombination protein F [Coprobacillus sp. D7]
          Length = 365

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 166/356 (46%), Gaps = 26/356 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  FRNY    + FD    I +G NG GKTN++EAI  LS G+ F+       
Sbjct: 1   MKVNSLCLDNFRNYNHFFIEFDRDINILIGSNGQGKTNLIEAIYLLSVGKSFK------- 53

Query: 65  TRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           T I      F   FA+V+G     +    LE       +  +I+D  I  + E    L +
Sbjct: 54  THINKQMIMFDCEFAKVKGEVTSNNKLRSLEMILGSDFKRAKIDDQDIYKISEYVGLLNV 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFD 179
              VP    +  G    RRRF+D  +  I P +   +  +  L++ RN   ++L +   D
Sbjct: 114 VVFVPDDLYLIKGSPNNRRRFIDLELSKISPIYVFNLSKYNNLLKERNKYLKILNQKNRD 173

Query: 180 S-SWCSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKENFPHIKLSLTGFLDGK 235
              +   ++ QMA L V++   R++ I  L+   + I   + K +   I L  + FL  +
Sbjct: 174 GDEYLEVLDEQMARLQVELIKKRIDFIKNLNQKVTSIYNLIAKNDNEKISLRYSCFLKQE 233

Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
              ++  AL ++  ++  D R M S      +G H+ DL + + +        S G+Q+ 
Sbjct: 234 LTYENILALYKKNHQR--DIRYMQSH-----LGIHKDDLKI-FMNGNAADLFASQGQQRT 285

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +++ + +A   LI +  G  P+LLLD++ + LDE ++N L  I+     Q F+T T
Sbjct: 286 IVLSLKIALIELIKDEIGEYPVLLLDDVLSELDEARKNMLLDILNQ-KIQTFITTT 340


>gi|125719147|ref|YP_001036280.1| recombination protein F [Streptococcus sanguinis SK36]
 gi|166221875|sp|A3CRC5|RECF_STRSV RecName: Full=DNA replication and repair protein recF
 gi|125499064|gb|ABN45730.1| DNA replication and repair protein recF, putative [Streptococcus
           sanguinis SK36]
          Length = 364

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 163/372 (43%), Gaps = 16/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY    + F     +F+G N  GKTNILEAI FL+  R  R  S  D+  
Sbjct: 3   LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   +   +E   G   + I L  +     R  ++N +    + +    + +    
Sbjct: 63  FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + 
Sbjct: 118 PEDIQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+ + G ++   R++ +  L S   +  +   +N   + +    +L          L
Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLHQIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D  + +    +    GS G+ + +++ + LA 
Sbjct: 235 EETYRFSLIISRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362
            +LI + T   PILLLD++ + LD  ++  L   ++ DI  Q F+T T      +L +  
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNSRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350

Query: 363 KFMRISNHQALC 374
           K   I   Q + 
Sbjct: 351 KIFTIQQGQIMS 362


>gi|300172306|ref|YP_003771471.1| DNA replication and repair protein RecF [Leuconostoc gasicomitatum
           LMG 18811]
 gi|299886684|emb|CBL90652.1| DNA replication and repair protein RecF [Leuconostoc gasicomitatum
           LMG 18811]
          Length = 375

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 163/354 (46%), Gaps = 19/354 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  +RNY  L L F     +F+G+N  GKTN+LE+I  L+  R  R +S  D+
Sbjct: 1   MELQSLRLVNYRNYTDLTLNFSDGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R       +   RV+       +S+    +  ++    ++N +    + +    L +  
Sbjct: 61  IRWQEKE-ATISGRVKKSISDTPLSLHFSNKGKKA----RVNHLEQSKLSQYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDS 180
             P    +  G    RRRF+D     ++P +      + R+++ RN    RL  +   D+
Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKERNAYLKRLQMKQTTDT 175

Query: 181 SWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            +   +  Q+ ++G ++ +AR   +E +   +  I   +  +    + L     LD + +
Sbjct: 176 IFLDVLTEQLVDIGSQVLLARQTFLERLEVAAQPIHAEISNKR-ETLTLRYQTSLDFEKE 234

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVV 295
                +K  + + L   +  + M   TL+GPHR D+  IV+  D A+    GS G+Q+  
Sbjct: 235 TDLATIKLVFEQTLKKQQSREIMQGSTLVGPHRDDIQFIVNDNDVAV---FGSQGQQRTT 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
            + I LA   L+   TG  PILLLD++ + LD +++  L   + D   Q F+T 
Sbjct: 292 ALAIKLAEIDLMQQETGEYPILLLDDVLSELDANRQTHLLLAIQD-KVQTFITA 344


>gi|299820838|ref|ZP_07052727.1| recombination protein F [Listeria grayi DSM 20601]
 gi|299817859|gb|EFI85094.1| recombination protein F [Listeria grayi DSM 20601]
          Length = 369

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 156/348 (44%), Gaps = 15/348 (4%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY  L + F     +F+G+N  GKTN+LEAI  L+  +  R A+  D       ++ S
Sbjct: 11  FRNYPFLEVDFSPAVNVFLGENAQGKTNLLEAILMLALAKSHRTANDKDFI-----NWDS 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       S+ LE       +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKIEGRVFRRGQSVPLELMITPKGKKAKVNHLEQKKLSQYVGNLNVVMFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   +  ++R+++ RN+ L         D      +  Q 
Sbjct: 126 GAPGVRRRFLNMEIAQMQPVYLHELSQYQRVLQQRNQYLKAAQMSKKADPIMLDILNEQF 185

Query: 191 AELGVKINIARVEMINALS--SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           AE+ + I   R E +  L   +  + Y        + +     +D    ++  + K    
Sbjct: 186 AEIAITITKRRSEFVKKLIRFAAPLHYQISRELEQLTIRYAASID--LQETDESTKTSVM 243

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           +KL   +K +     TLIGPHR DL   Y ++      GS G+Q+   + I LA   L+ 
Sbjct: 244 EKLQKNKKRELERGVTLIGPHRDDLHF-YINEQDVQVFGSQGQQRTTALSIKLAEIDLLK 302

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
              G  P+LLLD++ + LD+ +++ L   + +   Q F+T T+ S  D
Sbjct: 303 EEIGEYPVLLLDDVLSELDDFRQSHLLGAI-EGKVQTFVTTTNISGID 349


>gi|254520693|ref|ZP_05132749.1| recombination protein F [Clostridium sp. 7_2_43FAA]
 gi|226914442|gb|EEH99643.1| recombination protein F [Clostridium sp. 7_2_43FAA]
          Length = 361

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 172/372 (46%), Gaps = 19/372 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY SL +       +F+GDN  GKTNILEAI + +  +  R +   ++  
Sbjct: 3   IKRLQMLNYRNYKSLNITLGKNVNVFMGDNAQGKTNILEAIYYCAFAKSHRTSKDRELIN 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S S + +   + G + L D +I +    D           V + + EL  +  +    
Sbjct: 63  WNSDSAYVSL--LVGKDRL-DKNIDINILKDGKKAIKINKIKVSK-IGELFGNFNVVMFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P   +I       RR+F+D  +  ++ ++   ++ + +++  RN +L     DS      
Sbjct: 119 PEDLKIIKDSPGVRRKFIDMELCQLNSKYYYNLVQYNKVLNERNVVLKNRKLDSEILDIY 178

Query: 187 EAQMAELGVKINIARVEMINALS---SLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFC 241
           + Q+A  G  I I R++ IN L+   + I + +   KEN     +S    L+   + SF 
Sbjct: 179 DIQLANFGYHIIIERLKYINKLNFYGNDIHKDISSGKENVEFKYISTIKDLED-IENSFY 237

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            L       L   RK D     T IGPHR D IV   +   T + GS G+Q+  ++ I  
Sbjct: 238 EL-------LRRNRKKDIEKGTTSIGPHRDDFIV-LINDVDTKSFGSQGQQRSAVLTIKF 289

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           +  ++I   T   P+LLLD++ + LD +++  +   + +I + I  TG +  + + L+ +
Sbjct: 290 SSLKIIKEMTSEYPVLLLDDVLSELDFNRKRYILSTIGEIQTIITCTGIE-DLTNYLDNS 348

Query: 362 AKFMRISNHQAL 373
           ++  ++   + L
Sbjct: 349 SRVFKVKEGEIL 360


>gi|239930172|ref|ZP_04687125.1| recombination protein F [Streptomyces ghanaensis ATCC 14672]
 gi|291438514|ref|ZP_06577904.1| RecF protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341409|gb|EFE68365.1| RecF protein [Streptomyces ghanaensis ATCC 14672]
          Length = 373

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 159/361 (44%), Gaps = 27/361 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y  + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYPRVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    ++ R        +R  D L   +R   
Sbjct: 61  VRVGA---DRAIIRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFP---HIKLSLT 229
              D S     +  +A  G ++   R+++I  L  L     E +     P     + S  
Sbjct: 177 RTMDLSTLDVWDQHLARAGAELLAQRLDLITTLQPLADKAYERLAPGGGPLSLEYRPSAP 236

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           G    + D     L E+    L + RK +     TL+GPHR DL++    +     + S 
Sbjct: 237 GEAHTRED-----LFEQLTAALAEARKQEIERGVTLVGPHRDDLLLK-LGRLPAKGYASH 290

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T 
Sbjct: 291 GESWSYALALRLASYDLL-RAEGNEPVLVLDDVFAELDTRRRERLAELVAP-GEQVLVTA 348

Query: 350 T 350
            
Sbjct: 349 A 349


>gi|323141434|ref|ZP_08076324.1| putative DNA replication and repair protein RecF
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414090|gb|EFY04919.1| putative DNA replication and repair protein RecF
           [Phascolarctobacterium sp. YIT 12067]
          Length = 375

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 174/380 (45%), Gaps = 35/380 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L    FRNY S  L   +   +F G N  GKTN+LEAI + + G   R ++  ++
Sbjct: 1   MKINSLYAVNFRNYESCSLQLSSMINVFYGQNAQGKTNLLEAIFYSAFGMSHRTSAEEEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            ++G+ +  +       + G  ++ IK   + +R  + + ++   +R  +     L    
Sbjct: 61  LKMGADA-MAVGVEYASVSGSHEVKIKKYRQHERWQKEILLDGARVRPKEHYGA-LNTVM 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GYFD 179
             P   ++  G    RRRF D  +   DP +   ++ + R+++ RNRLL E     G  D
Sbjct: 119 FSPEDLQLVKGEPALRRRFFDMQIAQTDPVYYDLLLKYNRVLQQRNRLLKELRDNGGTPD 178

Query: 180 --SSW--------CSSIEAQMAELGVKINIARVEMINALSS----LIMEYVQKENFPHIK 225
               W         + +  ++A LG K+     E+ ++++     L + Y QK N   + 
Sbjct: 179 ILQPWNEEFIRLAAAIVRRRLAALG-KLQAIAGEIYSSITKGSEMLQVRYEQKANNSTL- 236

Query: 226 LSLTGFLDGKFDQSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
                     + QS  A  E+ Y ++L + +++D +   T IGPHR DL +     ++  
Sbjct: 237 ---------LYPQSAEAAAEDFYREQLSERQRLDILRGNTGIGPHRDDLQLLLNGLSLR- 286

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
           A GS G+Q+   + + L+  + + N  G  P+LLLD++ + LD  +R  L  +  D   Q
Sbjct: 287 AFGSQGQQRSGALALKLSQLQYVKNELGEFPVLLLDDVMSELDNSRRAQLL-LFIDGRVQ 345

Query: 345 IFMTGTDKSVFDSLNETAKF 364
            F+T  D+ +   L   A F
Sbjct: 346 TFITVNDRELIPELAGNAYF 365


>gi|116491822|ref|YP_803557.1| recombination protein F [Pediococcus pentosaceus ATCC 25745]
 gi|122266714|sp|Q03I57|RECF_PEDPA RecName: Full=DNA replication and repair protein recF
 gi|116101972|gb|ABJ67115.1| DNA replication and repair protein RecF [Pediococcus pentosaceus
           ATCC 25745]
          Length = 374

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 158/354 (44%), Gaps = 21/354 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRNYA L + F +   + +G+N  GKTN+LE+I FL+  R  R  S  D+  
Sbjct: 3   LKTLELHNFRNYADLVVEFGSGINVLLGENAQGKTNLLESIYFLALTRSHRTNSDRDLI- 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S+ +  ARV G          LE       +  ++N +    + +    L +    
Sbjct: 62  ----SWKTKAARVSGSVQKEHTVTPLEINLSSKGKNAKVNHLEQSRLSQYVGQLNVILFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182
           P    I  G    RR+F+D     +  ++      +  +++ RN+ + +  F    D  +
Sbjct: 118 PEDLSIVKGSPAVRRKFIDMEFGQMSSKYLYNSAQYRSVLKQRNQYIKQLQFNPKGDQVY 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS--- 239
              +  Q+A  G +I   R++ +  L     E  ++ +    KLS         DQ+   
Sbjct: 178 LDVLSDQLAAHGAEIIFQRIQFLKKLEKWSQEVHKEISQGKEKLSFQYVSPISSDQADTT 237

Query: 240 ---FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
              + AL+  + K+    R+ +    +TL+GPH  D+     DK ++   GS G+Q+   
Sbjct: 238 EKIYAALQALFQKQ----REKELQQGKTLVGPHLDDVRFMVNDKNVS-TFGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + + LA   L+   TG  P+LLLD++ + LD+ ++  L   + +   Q F+T T
Sbjct: 293 LSVKLAEIDLMKEETGEYPVLLLDDVLSELDDSRQTHLLTAIQN-KVQTFITTT 345


>gi|325275334|ref|ZP_08141285.1| recombination protein F [Pseudomonas sp. TJI-51]
 gi|324099525|gb|EGB97420.1| recombination protein F [Pseudomonas sp. TJI-51]
          Length = 367

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 162/353 (45%), Gaps = 16/353 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L    +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F  V+  EG  +++ +  E + D ++R   I+    R   +L + L + 
Sbjct: 61  IQYEQAAC-TVFGEVQLTEGGTSNLGVSRERQGDFTIR---IDGQNARSAAQLAELLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL   + E    E      L+L+ +     D+    L
Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKP-VFERTLSELVELGGLTLSYYRGWDKDRE---L 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLA 302
           +E  A  L   ++M      T  GP R+DL +    + A  I   S G+QK+V+  + +A
Sbjct: 233 QEVLASSLLRDQQMGH----TQAGPQRADLRLRLAANNAADIL--SRGQQKLVVCALRIA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
              L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  + 
Sbjct: 287 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELL 339


>gi|148545262|ref|YP_001265364.1| recombination protein F [Pseudomonas putida F1]
 gi|166220725|sp|A5VWC0|RECF_PSEP1 RecName: Full=DNA replication and repair protein recF
 gi|148509320|gb|ABQ76180.1| DNA replication and repair protein RecF [Pseudomonas putida F1]
          Length = 367

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 163/353 (46%), Gaps = 16/353 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L+   +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLLPSPRINILYGSNGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F  V+  EG  +++ +  E + + ++R   I+    R   +L + L + 
Sbjct: 61  IQYEQAAC-TVFGEVQLTEGGTSNLGVSRERQGEFTIR---IDGQNARSAAQLAELLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL   + E    E      L+L+ +     D+    L
Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKP-VFERTLSELVELDGLTLSYYRGWDKDRE---L 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLA 302
           +E  A  L   ++M      T  GP R+DL +    + A  I   S G+QK+V+  + +A
Sbjct: 233 QEVLASSLLRDQQMGH----TQAGPQRADLRLRLAGNNAADIL--SRGQQKLVVCALRIA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
              L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  + 
Sbjct: 287 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELL 339


>gi|332685538|ref|YP_004455312.1| DNA recombination and repair protein RecF [Melissococcus plutonius
           ATCC 35311]
 gi|332369547|dbj|BAK20503.1| DNA recombination and repair protein RecF [Melissococcus plutonius
           ATCC 35311]
          Length = 353

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 158/339 (46%), Gaps = 25/339 (7%)

Query: 25  FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEG 84
           F     IF+G+N  GKTN+LE+I  L+  R  R  +  ++ +     +    A++ G   
Sbjct: 3   FSKNLNIFLGENAQGKTNLLESIYVLAMTRSHRTNNEKELIQ-----WQELQAKINGSID 57

Query: 85  LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL 144
               +I LE +     R  +IN +  + +      L +    P    +  G    RR+F+
Sbjct: 58  KYSGTIPLEIQLSNKGRKTKINYIEQKRLSAYIGQLNVILFAPEDLSLVKGPPQIRRKFI 117

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKINIA 200
           +  +  +D  +   ++ ++ +++ RN+ L +       D  +   +  Q+AE G K+ +A
Sbjct: 118 NMELGQVDLVYLHNLVQYQGVLKHRNQYLKQLAEKKEKDFLYLDILSEQLAEFGSKVLLA 177

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC--------ALKEEYAKKLF 252
           R+ +I  L     +  +K +    +L++T      +  S           L++E+ ++L 
Sbjct: 178 RLSLIKKLEYWANQLHKKISHDKEQLTIT------YSSSITLPTILTQETLQQEFLRQLK 231

Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
           + RK +     T IGPHR DLI +  D+ + I +GS G+Q+   + I LA    +    G
Sbjct: 232 ENRKRELFKMTTFIGPHRDDLIFNINDQNVQI-YGSQGQQRTTALSIKLAEIDWMHEELG 290

Query: 313 FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             PILLLD++ + LD +++  L   + +   Q F+T T+
Sbjct: 291 EYPILLLDDVMSELDNERQLHLLETI-EGKVQTFLTTTN 328


>gi|227508131|ref|ZP_03938180.1| recombination protein F [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227192360|gb|EEI72427.1| recombination protein F [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 373

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 167/374 (44%), Gaps = 18/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K +++  FRNY    L F     +F+G+N  GKTN+LEAI  L+  R  R ++  ++
Sbjct: 1   MKLKDISLHNFRNYIDQTLQFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S +       ++   G   I + L T+  R+    +IN +    +      L +  
Sbjct: 61  INWQSQT-AQLKGTIQKQLGKVPIELDLGTKGKRA----KINHLEQAKLSSYVGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RR+F+D     +  R+      +++++R RNR L +       D 
Sbjct: 116 FAPEDLSIVKGAPQVRRKFMDMEFGQMSNRYLYNSTQYKKILRQRNRYLRDLQHKIQSDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQS 239
            +   +  Q++  G +I   R++++  L     + V  E     K +LT        D+ 
Sbjct: 176 VYLDVLSDQLSAYGAEIIYQRIQLLKKLEGF-AKNVHTE-ISQGKEALTFLYQTAVPDEQ 233

Query: 240 FCALKEEYA---KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
             +++  Y    K+  D ++ +     TL+GPHR DL      K +  + GS G+Q+   
Sbjct: 234 LTSIENIYQNLLKQFADIKEKEIQRGTTLLGPHRDDLKFAINKKEVQ-SFGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VF 355
           + + LA   L+   T   PILLLD++ + LD+ ++  L   + D   Q F+T T  S V 
Sbjct: 293 LSVKLAEIDLMKEQTNEYPILLLDDVLSELDDYRQTHLLTAIQD-KVQTFLTTTSLSGVQ 351

Query: 356 DSLNETAKFMRISN 369
             L    K  RI+N
Sbjct: 352 QELLSNPKIFRIAN 365


>gi|148262088|ref|YP_001228794.1| recombination protein F [Geobacter uraniireducens Rf4]
 gi|189039625|sp|A5GDX3|RECF_GEOUR RecName: Full=DNA replication and repair protein recF
 gi|146395588|gb|ABQ24221.1| DNA replication and repair protein RecF [Geobacter uraniireducens
           Rf4]
          Length = 364

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 164/352 (46%), Gaps = 19/352 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + +  FRN   + L    +  IF G N  GKTN+LE+I  L   + F+ A  +++
Sbjct: 1   MKLNKIYLLSFRNLEKIELTPAHRFNIFYGKNAQGKTNLLESIFLLGTMKSFKMAKNSEM 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R GS  S    +   +G+     + I      D+  + ++++   +  VDE   +L + 
Sbjct: 61  VRWGSDQSLIKGWVERDGVTREIALFI------DKQGKKIKLDRKSVTKVDEFFGNLNVV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    +  G+   RR++LDR VF+ D  +     D+ ++++ RN LL  G  + S  
Sbjct: 115 VFTPEEINMVRGVPDLRRKYLDRAVFSSDVTYLHAYHDYCKILKNRNILLKSG--EKSGL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQ----KENFPHIKLSLTGFLDGKFDQS 239
                ++AE G K+   R++ ++ +  L+ ++       E    I+          +++ 
Sbjct: 173 DVWTEKLAEYGRKVINKRLDYLHEIQELLSKFYNDISGTEEVVEIRYRPHLMDMENYEKD 232

Query: 240 FC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            C AL E   K   + ++  +    TL+GPHR D+      +A+    GS G+Q+  ++ 
Sbjct: 233 NCGALSEALVKCAAEEQRRGT----TLVGPHRDDIDFVLNGRALK-QFGSQGQQRSYVLA 287

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + ++    +       PILLLD++++ LD+D+   L   +     Q+F+T T
Sbjct: 288 LKMSEIDCLHQKFDSPPILLLDDMTSELDQDRNRNLMEFLKKKEMQVFITTT 339


>gi|146291114|ref|YP_001181538.1| recombination protein F [Shewanella putrefaciens CN-32]
 gi|166221865|sp|A4Y1A6|RECF_SHEPC RecName: Full=DNA replication and repair protein recF
 gi|145562804|gb|ABP73739.1| DNA replication and repair protein RecF [Shewanella putrefaciens
           CN-32]
          Length = 360

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 168/362 (46%), Gaps = 25/362 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LNI  FRN    +L+      +  G NG GKT+ILEAI FL  GR FR      V    +
Sbjct: 6   LNIEAFRNIQFAQLIPAPGINVIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVINNDN 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA +    G + I ++     +  V+   I+   ++ +  L + L I  + P S
Sbjct: 66  DK-LTLFATLNLARGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSI 186
              +F G    RR+F+D   F  DP+      +  R+++ RN+LL  G  Y    +    
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHADPQFYGAWTNVRRVIKQRNQLLRNGAVYTHIQFWDQE 180

Query: 187 EAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             + AE   +I    V+ +N  L  +I E++   +   +K+S T   D K D  F  L E
Sbjct: 181 FVRYAEQVTEIRNHYVDSLNGLLKGIIGEFLPSVD---VKVSFTRGWDSKTD--FAELLE 235

Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y++ L  G         T+ GPH++DL +   +     A  S G+ K+++  + +A  
Sbjct: 236 NQYSRDLATG--------HTVSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363
           +L+        I L+D++ + LD   R  L + +TD G+Q+F+T  D  ++ DSL+    
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPN 346

Query: 364 FM 365
            M
Sbjct: 347 RM 348


>gi|224541291|ref|ZP_03681830.1| hypothetical protein CATMIT_00451 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525795|gb|EEF94900.1| hypothetical protein CATMIT_00451 [Catenibacterium mitsuokai DSM
           15897]
          Length = 364

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 165/358 (46%), Gaps = 33/358 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK LN+ +FRNY      F     I +GDN  GKTNILEAI  LS  R F+     ++
Sbjct: 1   MEIKTLNLIQFRNYEKQTFHFHPLVNIIIGDNAQGKTNILEAIYLLSTTRSFKSRMLDEM 60

Query: 65  TRIGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                  F  ++ RV G  + G     +K+     +  +   IND  +    +   +  +
Sbjct: 61  I-----MFDQSYTRVSGHIVNGTRPYDLKVVV--SKEGKKAFINDKAVSKTSDYLGYFNV 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFD 179
               P   ++  G    RR  +D  +  I P +   +  + +LM+ RN   ++L +G+ +
Sbjct: 114 ILFTPQDLQLIKGSPKMRRTLIDTEISKISPIYMFNLNKYNKLMKERNKYLKMLYDGHKE 173

Query: 180 SS-WCSSIEAQMAELG---VKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFL 232
              +   +  +MAEL    ++  +  +E++N +S  +  Y+  +     KL L   T F 
Sbjct: 174 PDMYLEVLSEEMAELEEDLIQRRMKFIELLNEISGQMYAYISGKE----KLVLRYHTQFK 229

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           D   +      K+ Y + +F G  +D        G H+ DL + + D+       S G+Q
Sbjct: 230 DISKEGILDKYKKNYKRDIFQGTTVD--------GIHKDDLKI-FLDENDAGMFASQGQQ 280

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + +++ + +A   ++    G  P+LLLD++ + LDE+++  L  ++ D   Q F+T T
Sbjct: 281 RSIILSMKIALVEIVKMQIGEYPVLLLDDVLSELDEERKMKLLNLI-DHKVQTFITTT 337


>gi|90581122|ref|ZP_01236921.1| recombination protein F [Vibrio angustum S14]
 gi|90437643|gb|EAS62835.1| recombination protein F [Vibrio angustum S14]
          Length = 360

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 166/363 (45%), Gaps = 17/363 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN AS  L   A     VG NG GKT++LEAI +L  GR FR    + V R   
Sbjct: 6   LMVHDFRNIASCDLALAAGFNFLVGANGSGKTSVLEAIHYLGHGRSFRSHLTSRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              F    RV   +    + I +  + D +   ++I     + + +L + L +  + P  
Sbjct: 66  AELF-IHGRVVDNQTQLMLPIGINKKRDGTTD-VKIAGESNQKLAQLAQILPLQLITPEG 123

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187
             +  G    RR F+D  VF ++P+        +RL + RN LL     Y + S+    +
Sbjct: 124 FDLLIGGPKYRRAFIDWGVFHVEPKFYHAWARLKRLTKQRNALLKTARSYRELSYW---D 180

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            ++A L  +I++ R + I+A+     E  Q    P   + L GF  G   ++       Y
Sbjct: 181 QELALLAEEISVWRKDYISAVKEKAAEIFQV-FLPEFDIQL-GFYRGWEKET------PY 232

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
           A+ L    + D     T+ GPH++DL +      +     S G+ K+++  + LA    +
Sbjct: 233 AELLQRNFERDCQLGYTVSGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQGLHL 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366
           +  TG   I L+D+ ++ LD  +R  L + + +  +Q+F++  +D  V D L+E  K   
Sbjct: 292 TEATGKQCIYLIDDFASELDSHRRALLAQRLKETNAQVFISAISDDQVADMLDENGKLFH 351

Query: 367 ISN 369
           + +
Sbjct: 352 VEH 354


>gi|313496420|gb|ADR57786.1| RecF [Pseudomonas putida BIRD-1]
          Length = 367

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 162/354 (45%), Gaps = 18/354 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L+   +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRI--GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            +    + + F      EG  G +++ +  E + + ++R   I+    R   +L + L +
Sbjct: 61  IQYEQAACTVFGEVQLTEG--GTSNLGVSRERQGEFTIR---IDGQNARSAAQLAELLPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D + 
Sbjct: 116 QLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPAS 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            ++ + ++     +I+  R   I AL   + E    E      L+L+ +     D+    
Sbjct: 176 QAAWDRELCLASAEIDEYRRNYIKALKP-VFERTLSELVELDGLTLSYYRGWDKDRE--- 231

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFL 301
           L+E  A  L   ++M      T  GP R+DL +    + A  I   S G+QK+V+  + +
Sbjct: 232 LQEVLASSLLRDQQMGH----TQAGPQRADLRLRLAGNNAADIL--SRGQQKLVVCALRI 285

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           A   L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  + 
Sbjct: 286 AQGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELHCQVFITCVDHELL 339


>gi|323350818|ref|ZP_08086477.1| recombination protein F [Streptococcus sanguinis VMC66]
 gi|322122992|gb|EFX94695.1| recombination protein F [Streptococcus sanguinis VMC66]
          Length = 364

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 161/366 (43%), Gaps = 16/366 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FRNY    + F     +F+G N  GKTNILEAI FL+  R  R  S  D+  
Sbjct: 3   LQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   +   +E   G   + I L  +     R  ++N +    + +    + +    
Sbjct: 63  FTENDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + 
Sbjct: 118 PEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFLTV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ Q+ + G ++   R++ +  L S   +  +   +N   + +    +L          L
Sbjct: 178 LDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVK---YLSSIPLHQIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D  + +    +    GS G+ + +++ + LA 
Sbjct: 235 EETYRFSLISSRKRDLFKKNTGVGPHRDD--IAFFINQMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA 362
            +LI + T   PILLLD++ + LD  ++  L   ++ DI  Q F+T T      +L +  
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNSRQLKLLETISQDI--QTFITTTTLEHLKNLPQDI 350

Query: 363 KFMRIS 368
           K   I 
Sbjct: 351 KIFTIQ 356


>gi|182437496|ref|YP_001825215.1| recombination protein F [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326778151|ref|ZP_08237416.1| DNA replication and repair protein recF [Streptomyces cf. griseus
           XylebKG-1]
 gi|226737838|sp|B1VPF3|RECF_STRGG RecName: Full=DNA replication and repair protein recF
 gi|178466012|dbj|BAG20532.1| putative DNA recombination and repair protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326658484|gb|EGE43330.1| DNA replication and repair protein recF [Streptomyces cf. griseus
           XylebKG-1]
          Length = 376

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 158/358 (44%), Gaps = 22/358 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R    +G     I+LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGA---ERAVIRAAVTQGERSQLIELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFL 232
              D S     +  +  +G ++   R+++I  L  L  +    V     P + L     +
Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGP-VALEYRSSV 235

Query: 233 DGKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            G    +     L E+    L   RK +     TL+GPHR DL++          + S G
Sbjct: 236 GGDVGPARTRDELYEQLTAALVGVRKQEIERGVTLVGPHRDDLLLGLRGMPAK-GYASHG 294

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           E     + + LA   L+  + G  P+L+LD++ A LD  +R  L  +V   G Q+ +T
Sbjct: 295 ESWSYALALRLASYELL-RSEGNEPVLVLDDVFAELDARRRERLAELVVP-GEQVLVT 350


>gi|311032259|ref|ZP_07710349.1| recombination protein F [Bacillus sp. m3-13]
          Length = 373

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 168/379 (44%), Gaps = 32/379 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  +RNY SL  VF+    + +G+N  GKTN++E+I  L+  +  R ++  D+ R
Sbjct: 3   IEELTLRHYRNYESLHAVFEDGVNVILGENAQGKTNVMESIYVLAMAKSHRTSNDKDLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   + ++EG     +  + L+    +  +  +IN +    + +   ++ I    
Sbjct: 63  -----WDEEYGKIEGRIHKRNGELPLQLVISKKGKKAKINHIEQTKLSQYIGNMNIVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDSSW 182
           P    +  G    RRRF+D  +  + PR+   +  ++++++ RN    +L T    D + 
Sbjct: 118 PEDLTLVKGSPQVRRRFIDMELGQVSPRYMHDLSRYQKVLQQRNHYLKQLQTRKQKDETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-----LTGFLDGKFD 237
              +  Q+ EL   +   R E +  L S            H  +S     LT       D
Sbjct: 178 LFVLTEQLIELAASVTEKRQEFVQLLQSWAQPI-------HKSISRGLEELTIIYKPSID 230

Query: 238 -----QSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGE 291
                 +   + E Y +K FD  K   + R  TL GPHR DL+     K +    GS G+
Sbjct: 231 YVSETTNLSKMIEAYNEK-FDKIKDREIERGVTLFGPHRDDLLFQVNGKDVQ-TFGSQGQ 288

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           Q+   + + LA   LI +  G  PILLLD++ + LD+ +++ L   +     Q F+T T 
Sbjct: 289 QRTTALSLKLAEIDLIHSVVGEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTS 347

Query: 352 KSVFD--SLNETAKFMRIS 368
               D  +L + A +  +S
Sbjct: 348 VDGIDHQTLKQAATYEVVS 366


>gi|117923321|ref|YP_863938.1| DNA replication and repair protein RecF [Magnetococcus sp. MC-1]
 gi|259563664|sp|A0L3I9|RECF_MAGSM RecName: Full=DNA replication and repair protein recF
 gi|117607077|gb|ABK42532.1| DNA replication and repair protein RecF [Magnetococcus sp. MC-1]
          Length = 382

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 161/353 (45%), Gaps = 15/353 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRN     L F     +  G NG GK+N+LEAI  L+ GR FRRA  A +
Sbjct: 1   MQLDRLTLRDFRNITEAELRFGPGLNLITGPNGHGKSNLLEAIGLLATGRSFRRAPAAAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G P F      + G     D+  +LE       + ++IN         L + L    
Sbjct: 61  RRYGQPWFH-----LRGETTARDLGHRLEFFGQAGRQAVKINGKSASAASALGQALAAVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPR-----HRRRMIDFERLMRGRNRLLTEGYFD 179
           + P   R+       RR F+D + F    +     H     D+++ ++ RNRLL     +
Sbjct: 116 VTPDTLRLVQDGPGVRRGFVDWVAFTCGRQQGALSHAVVAGDYQKALKARNRLLKLPRVE 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSLTGFLD---GK 235
           +    + E+Q+A LG K+   R +++  L   +   ++       + ++L+  LD     
Sbjct: 176 AGEWLAWESQLATLGAKMARNRYQVLQRLQPHLDRMLEDLGMAQRLTITLSCQLDRHGTH 235

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           + +   A    Y + L + R  +  S  T IGPHR DL++     A+    GS G+QK  
Sbjct: 236 WAEDESAAASLYRRLLAENRASERRSGGTAIGPHRDDLVLRLDGHALA-QFGSQGQQKRA 294

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            + + LA A+L+    G  P+ +LD+ +A LD D  + L  ++   G QIF+ 
Sbjct: 295 ALALKLAEAQLLQEQLGEWPLFVLDDPAAELDTDGMSRLMGLLARCGGQIFVA 347


>gi|87121027|ref|ZP_01076919.1| recombination protein F [Marinomonas sp. MED121]
 gi|86163865|gb|EAQ65138.1| recombination protein F [Marinomonas sp. MED121]
          Length = 375

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 173/365 (47%), Gaps = 22/365 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L+IS+ RN + ++        +  G NG GKT+ILEAI  LS GR FR   +   
Sbjct: 1   MPLQRLDISQLRNLSKVQFKPSPHVNLISGANGSGKTSILEAIHLLSLGRSFRSHKHKTY 60

Query: 65  TRIGSPSFFSTFARVE-------GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
            +  + S    FA +E       G+     I +K   R    V   +++   I+ + EL 
Sbjct: 61  IQKET-SECVIFALIEPVQTTGLGLSSPQPIGLK---RQLDGVLDARLSGQKIQSLVELT 116

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           + L I  + P   R+  G    RR+FLD  VF   P        +++ ++ RN LL  G 
Sbjct: 117 QALPIQLINPDAFRLLEGTPKIRRQFLDWGVFHHSPGFINAWRGWQKALKQRNSLLRRGK 176

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
              +   + + ++  LG ++N  R + + +L  +  + +   N   +++SL  F      
Sbjct: 177 ISDNLLLAFDQELIRLGSEVNQYRHDYLESLIPVFKQVLSSLN-ATLEVSLQLF------ 229

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           Q + A K   A+ L   R  D  S  +  GP R+DL V        +   S G+QK+V+ 
Sbjct: 230 QGWDAQK-TLAQSLDASRSRDIESGYSNTGPQRADLRVK-TPTGDALDALSRGQQKLVVS 287

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + +A  +L+   +G + + L+D++ A LD++ R+ L +++  + SQIF+T     + D 
Sbjct: 288 ALKIAQGKLLIE-SGRSLVFLVDDLPAELDKEHRDKLCQLLEALNSQIFITSVGPELMDY 346

Query: 357 SLNET 361
           S +ET
Sbjct: 347 SWSET 351


>gi|313887660|ref|ZP_07821342.1| DNA replication and repair protein RecF [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846269|gb|EFR33648.1| DNA replication and repair protein RecF [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 357

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 174/376 (46%), Gaps = 26/376 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  FRNY  L  V      +  G N  GKTN+LE+I        FR     D+
Sbjct: 1   MKLKHLRLFNFRNYKGLDFVPGENINVLYGLNASGKTNLLESIYMSIRATSFRSLKDFDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN-KHLRIS 123
             I   S  S   R    +   D  I++   +++    L IND      D++N K  R S
Sbjct: 61  INIDENSS-SIITRYMTEDYKDDYRIEISKFENKK---LFIND------DKVNTKEYRKS 110

Query: 124 WLV----PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             V    P    I      ERR+FLD ++  ID  +   M  + RL+  RN+LL     D
Sbjct: 111 RFVVLFNPEDLNIIKYSPKERRKFLDDLLSNIDLNYDFYMYKYRRLLFERNKLLKIN-MD 169

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +     + ++   G KI I R++ I  L+ +  ++ +  +   + ++    +    D+ 
Sbjct: 170 RNLLDVYDREIVRNGTKIIIMRLKTIKKLNEIAKKHYKNLSGDDLNITYLSTVPVFVDEE 229

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVG 298
              L E Y + L +    D   R T IGPHR DL  D+  +K  + ++GS GEQ+ +++ 
Sbjct: 230 --ELMENYLRILKESLPKDLEKRYTTIGPHRDDL--DFKINKFSSKSYGSQGEQRSIVLS 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA A LI +     P+LLLD++ + +D  +   L   + D+  Q F+T T+   F  S
Sbjct: 286 LKLAEADLIRDLYKTKPLLLLDDVFSEIDSKRSRYLLHSLKDL--QTFITTTEADEFLKS 343

Query: 358 LNETAKFMRISNHQAL 373
           ++  A F R+S  + L
Sbjct: 344 VD--ANFYRVSQGRIL 357


>gi|26986757|ref|NP_742182.1| recombination protein F [Pseudomonas putida KT2440]
 gi|38258508|sp|Q88RW7|RECF_PSEPK RecName: Full=DNA replication and repair protein recF
 gi|24981348|gb|AAN65646.1|AE016191_3 DNA replication and repair protein RecF [Pseudomonas putida KT2440]
          Length = 367

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 163/353 (46%), Gaps = 16/353 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L+   +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F  V+  EG  +++ +  E + + ++R   I+    R   +L + L + 
Sbjct: 61  IQYEQAAC-TVFGEVQLTEGGTSNLGVSRERQGEFTIR---IDGQNARSAAQLAELLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL   + E    E      L+L+ +     D+    L
Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKP-VFERTLSELVELDGLTLSYYRGWDKDRE---L 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLA 302
           +E  A  L   ++M      T  GP R+DL +    + A  I   S G+QK+V+  + +A
Sbjct: 233 QEVLASSLLRDQQMGH----TQAGPQRADLRLRLAGNNAADIL--SRGQQKLVVCALRIA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
              L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  + 
Sbjct: 287 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELL 339


>gi|294055474|ref|YP_003549132.1| DNA replication and repair protein RecF [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614807|gb|ADE54962.1| DNA replication and repair protein RecF [Coraliomargarita
           akajimensis DSM 45221]
          Length = 360

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 155/349 (44%), Gaps = 15/349 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ K L + +FRN +   L   A     +G NG GK+N+LEA+  ++  R FR    + +
Sbjct: 1   MRFKELRVQDFRNVSFAELDLSADRNFLLGPNGQGKSNLLEALGLVTALRSFRTQQMSAL 60

Query: 65  TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R  GS  F + +     + G  ++ I          R L   + + R+ D + +   + 
Sbjct: 61  PRQGGSGGFAAVYVLQHELRGETELEIHSGA---AGRRVLLDGEAIGRLGDFIGRFPVVP 117

Query: 124 WLVPSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             + S D  I  G   ERRRFLD  + AID  +   + D+ + +  RNRLL  G  D+ +
Sbjct: 118 --LSSGDLMILRGSPAERRRFLDLSLSAIDADYYLALRDYHKGVAERNRLLKRGGRDAEF 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             + EA++A   V+++  RV  +  L + ++E      +  I  S  G            
Sbjct: 176 -DAFEAEIARHAVRLSAKRVSGMARLEATLVEV-----YAAIAESDEGPAVAYRPGEELG 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E +   L   RK D +   T  GPHR D  +          + S G+Q+ + V + +A
Sbjct: 230 TVEHFKAMLERNRKRDQVLGSTQKGPHRDDFSLSLSTGGAK-EYASDGQQRGLCVALRIA 288

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            A+L       AP+LL D++   LD  ++   +R   D   Q+  +GT+
Sbjct: 289 QAKLFQQALNVAPVLLADDVLGELDPHRKAGFWRACPD-DWQLIASGTE 336


>gi|302552698|ref|ZP_07305040.1| recombination protein F [Streptomyces viridochromogenes DSM 40736]
 gi|302470316|gb|EFL33409.1| recombination protein F [Streptomyces viridochromogenes DSM 40736]
          Length = 373

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 158/361 (43%), Gaps = 27/361 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y  + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYPRVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGA---ERAIIRAQVRQGDRQQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP---HIKLSLT 229
              D S     +  +A  G ++   R+++I  +  L     E +     P     K S  
Sbjct: 177 RSMDMSTLDVWDQHLARAGAELLAQRLDLIATIQPLADKAYEQLAPGGGPVALEYKPSAP 236

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           G    + D     L E+    L + RK +     TL+GPHR DL +    +     + S 
Sbjct: 237 GEAHTRED-----LYEQLTAALAESRKQEIERGVTLVGPHRDDLQLK-LGQLPAKGYASH 290

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T 
Sbjct: 291 GESWSYALALRLASYDLL-RAEGNEPVLVLDDVFAELDTRRRERLAELVAP-GEQVLVTA 348

Query: 350 T 350
            
Sbjct: 349 A 349


>gi|225157625|ref|ZP_03725015.1| DNA replication and repair protein RecF [Opitutaceae bacterium
           TAV2]
 gi|224802692|gb|EEG20945.1| DNA replication and repair protein RecF [Opitutaceae bacterium
           TAV2]
          Length = 375

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 158/368 (42%), Gaps = 37/368 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + +  FRN A   L  D +    VG NG GKTN+LEA  F++  R FR      +
Sbjct: 1   MRLRRITLQNFRNIAFADLALDGRLQFLVGANGQGKTNLLEAAGFVTALRSFRTTDARIL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G P             G   + IKL T D + V C    + + R+ D L +   +  
Sbjct: 61  IRQGQPEAAIACEFEHEHLGSTRLLIKLRT-DGKEVWC--DGERISRLADHLGRFPTV-- 115

Query: 125 LVPSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  S D ++  G    RRR+LD  + A DP + R +  + + + GRN LL          
Sbjct: 116 VFSSQDQQLVRGAPALRRRWLDLTLSATDPAYLRALQTYHQALAGRNNLLKR-QAPPPQL 174

Query: 184 SSIEAQMAELGVKINIARVEMINALS-------SLIMEYVQKENF--------------P 222
           ++ E  +A    +++  R   I  L+       + I ++ +  +               P
Sbjct: 175 AAFEHPLAAAAAELSAKRTAGIADLAQHVTTAYARIADHAEPTDIALRADNATPSAGEPP 234

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
            +    +    G+  +++ AL E         R  D   R TL GPHR DL++    ++ 
Sbjct: 235 PLDAGCSALDVGRSQRAWLALFEH-------ARARDLQMRTTLTGPHRDDLLLRVGGRSA 287

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              +GS G+Q+ + + + LA      + TG  PILL D++   LD  +R   +  + D  
Sbjct: 288 R-DYGSEGQQRCLALALRLAQVEFFRHKTGLEPILLADDVLGELDPARRRRFWTSLGDT- 345

Query: 343 SQIFMTGT 350
            Q+  TGT
Sbjct: 346 RQVIATGT 353


>gi|213966253|ref|ZP_03394437.1| DNA replication and repair protein RecF [Corynebacterium amycolatum
           SK46]
 gi|213951105|gb|EEB62503.1| DNA replication and repair protein RecF [Corynebacterium amycolatum
           SK46]
          Length = 399

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 167/368 (45%), Gaps = 36/368 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I++L++ +FR++  L + F    T+F G NG GKTNI+EA+ +LS     R +  A +
Sbjct: 1   MHIRYLSLRDFRSWPELEVEFTPGITVFTGQNGYGKTNIVEAVGYLSTLGSHRVSMDAPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+PS   S  A  +G E  A + I     +       QIN   ++   EL   ++  
Sbjct: 61  VRSGTPSARISATAVNDGRELTAHLLI-----NPHRANQAQINRTRLKSPRELLGIVKSV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---------- 173
           +  P    +  G    RRR++D ++    P      I +++++R +N LL          
Sbjct: 116 FFSPEDLTLVKGEPASRRRYIDDLLALRRPLSAGIRIQYDKILRQKNALLKSAGSTLRRG 175

Query: 174 ---TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
              +EG    S   + +AQ+A++G  +  AR+++I  LS  + E       PH + +   
Sbjct: 176 YSSSEGQAALSTLDTWDAQLAQVGAALMAARMDLIAELSEHVSE-AYATLAPHSRPATIA 234

Query: 231 F------LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT-LIGPHRSDL-IVDYCDKAI 282
           +      LDG    S   L E         R+   + R + L+GPHR DL ++   D A 
Sbjct: 235 YAPKVDSLDGGPLPSEPELLEALLLTKMAERRTAEIERGSCLVGPHRDDLDLILGNDPAK 294

Query: 283 TIA-HGSTGEQKVVL-VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
             A HG T    + L +G +      +    G  PIL+LD++ A LD  +R AL  I   
Sbjct: 295 GFASHGETWSFALALRLGAY-----FLLRADGPDPILVLDDVFAELDRHRREALMEIAQQ 349

Query: 341 IGSQIFMT 348
              Q+ +T
Sbjct: 350 -AEQVLIT 356


>gi|294794200|ref|ZP_06759336.1| DNA replication and repair protein RecF [Veillonella sp. 3_1_44]
 gi|294454530|gb|EFG22903.1| DNA replication and repair protein RecF [Veillonella sp. 3_1_44]
          Length = 366

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 163/368 (44%), Gaps = 34/368 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  +++ F+ +  +  G NG GKTNILE+I   + G+  R    +D+
Sbjct: 1   MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +        + E  +    ++IKL  +  + +R   +ND  I    EL   L    
Sbjct: 61  LMFNAEE-AGIVVKFEKKDTPQKVNIKLFRQGPKDIR---LNDTKIS-QKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN +L E    ++   
Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175

Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KF 236
             W   + A MA   VK  +  ++ IN L  L+               LTG L+     +
Sbjct: 176 EEWDLQL-ADMASFIVKKRLESLKKINLLIDLMNR------------KLTGGLENLTIGY 222

Query: 237 DQSFCALKE-EYAKKLFDGR-----KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           +Q +      EY K+ F  R       D     T +GPHR DL   + D       GS G
Sbjct: 223 EQPYMDNGSLEYTKEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQG 281

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ + L+    I +  G  P+LLLD++ + LDE +R  L + +     Q F+T T
Sbjct: 282 QQRTAVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDESRRTNLLQFIHK-RIQTFITTT 340

Query: 351 DKSVFDSL 358
           D   F  L
Sbjct: 341 DIHDFKDL 348


>gi|78484349|ref|YP_390274.1| DNA replication and repair protein RecF [Thiomicrospira crunogena
           XCL-2]
 gi|123556168|sp|Q31JS3|RECF_THICR RecName: Full=DNA replication and repair protein recF
 gi|78362635|gb|ABB40600.1| DNA replication and repair protein RecF [Thiomicrospira crunogena
           XCL-2]
          Length = 362

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 162/370 (43%), Gaps = 23/370 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI    +  FRN     L F     + VGDN  GKT ++EAI  L+ GR FR A    + 
Sbjct: 3   KILQFQLQHFRNIEQASLTFGEGLNLIVGDNAAGKTALIEAIWTLASGRSFRTAKPHQLI 62

Query: 66  RIGSPS--FFSTFARVEGME--GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           +        F T    + +   GLA  S K+          L+I+  + +   +++  L 
Sbjct: 63  QQNQSELVLFGTLTEADRIHKIGLARTSDKV---------TLKIDGELAKTQADMSAKLP 113

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           +  L P   R+       RR+F+D   F  +         ++R ++ RN  L +    +S
Sbjct: 114 VQLLTPESHRLLEEGPKARRQFMDWGCFHHNADFIHLWRHYQRALKQRNHALKK-RLPAS 172

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                +AQ+ +   KI++ R + I  L+  ++E+ Q    P I +S     +  +   + 
Sbjct: 173 QIQLWDAQLVDAAEKIDVIRADYITRLTPYLVEFCQA-LMPEITVS----PECHYRPGWP 227

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIF 300
              E Y + L D    D++   T  G HR+D+   +   +A+ I   S G+QK+ +  + 
Sbjct: 228 KTAESYRQLLADNFAKDTLQGHTQYGSHRADIKFRFNGQEALMIL--SRGQQKLFVCALL 285

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN- 359
           LA A L    +    I+L+D++ A LD   R  L +++  +  Q  +T T + +   L  
Sbjct: 286 LAQATLYQQHSQNPVIMLIDDLPAELDAKHRETLLKLLNLLDIQHILTSTAQDLIPVLEP 345

Query: 360 ETAKFMRISN 369
           E AK  RI +
Sbjct: 346 EKAKIWRIQH 355


>gi|119961476|ref|YP_945837.1| recombination protein F [Arthrobacter aurescens TC1]
 gi|166220697|sp|A1R0S5|RECF_ARTAT RecName: Full=DNA replication and repair protein recF
 gi|119948335|gb|ABM07246.1| putative DNA replication and repair protein RecF [Arthrobacter
           aurescens TC1]
          Length = 399

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 172/386 (44%), Gaps = 39/386 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++++FR+YA + L      T+ VG NG+GKTN++EAI +L+     R ++ A + R
Sbjct: 3   LEHLSLTDFRSYAQVDLKLGPGVTVLVGSNGIGKTNLMEAIGYLATLSSHRVSTDAPLLR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+        R + + G     I+LE    R+ R        +R  D L    +     
Sbjct: 63  FGTE---RALIRAKLVRGEQSTVIELEINAGRANRGRINRSNPVRARDILGI-CQTVLFA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183
           P    +  G    RRRFLD ++ ++ PRH     D++R+++ RN LL     G F +   
Sbjct: 119 PEDLALVKGDPSNRRRFLDELLVSLVPRHAATRSDYDRVLKQRNALLKSARTGKFTAGHE 178

Query: 184 SSIEA---QMAELGVKINIARVEMINAL-SSLIMEYVQ-----KENFPHIKLSLTGFLD- 233
           ++++     MA  G ++  AR+E++  L   L   Y Q     K+     + ++ G LD 
Sbjct: 179 ATLDVWDQHMARAGAELLHARLELVERLRPHLNSAYAQLTDASKDAGAVYRSTIQGVLDD 238

Query: 234 --GKFDQ--------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
             G  D               S   L E Y +     RK +     +L+GPHR +L +  
Sbjct: 239 DGGPTDHGTEPSPSVDDLRLLSVDELTERYVQAFAASRKKELERGISLVGPHRDELEL-V 297

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAP--ILLLDEISAHLDEDKRN 332
             +A    + S GE   + + + LA   ++   + T G AP  IL+LD++ A LD  +R 
Sbjct: 298 LGQAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGTAPILILILDDVFAELDVHRRR 357

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSL 358
            L  IV      +     D  + + L
Sbjct: 358 KLAAIVAGAEQVLVTAAVDADIPEEL 383


>gi|329942796|ref|ZP_08291575.1| DNA replication and repair RecF family protein [Chlamydophila
           psittaci Cal10]
 gi|332287388|ref|YP_004422289.1| recombination protein F [Chlamydophila psittaci 6BC]
 gi|313847968|emb|CBY16965.1| DNA replication and repair protein [Chlamydophila psittaci RD1]
 gi|325506793|gb|ADZ18431.1| recombination protein F [Chlamydophila psittaci 6BC]
 gi|328815056|gb|EGF85045.1| DNA replication and repair RecF family protein [Chlamydophila
           psittaci Cal10]
 gi|328914637|gb|AEB55470.1| recF protein [Chlamydophila psittaci 6BC]
          Length = 368

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 162/365 (44%), Gaps = 16/365 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRNY    + F        G+N  GKTN++EA+  LS GR FR +   +    GS
Sbjct: 6   LRLKNFRNYKEAEVSFSPNINYIFGENAQGKTNLIEALYVLSLGRSFRTSHLTEAIFFGS 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
             FF   TF +    +G+      L T  D+  + +  +   I+ + +L   + I  L  
Sbjct: 66  SYFFLEMTFEK----DGVPHT---LSTYVDKQGKKIFCDQSPIKTLSQLIGMIPIV-LFS 117

Query: 128 SMDR-IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           + DR + SG   +RR FL+ ++   DP+++  +  + R +  RN LL      +S  S  
Sbjct: 118 AKDRCLISGSPSDRRLFLNLLLSQCDPQYKHSLSYYHRALLQRNTLLKTK--QTSTLSVW 175

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + Q+A LG  + ++R      L+ LI E         + +     L  +   S  A+K E
Sbjct: 176 DEQLATLGSYLCLSRYTCCTQLNQLIQELWNNSLSERLFIKFKSPLIKQCKISQEAVKNE 235

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
             K+L      D     T +GPHR D  +   D  +     S G+++ +L  + LA +  
Sbjct: 236 LHKQLSASLHRDLELGNTSVGPHREDFTLMINDLPVA-QFSSEGQKQSLLAVLKLAESLY 294

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           I +     P+  +D+I A LD  + + L  +   +G Q  +T T      +L+ET +   
Sbjct: 295 IKSIHNVYPLFCMDDIHAGLDNQRISQLLGLAPSLG-QTLITSTTLP-HQTLSETHRIFS 352

Query: 367 ISNHQ 371
           ++  Q
Sbjct: 353 VNQAQ 357


>gi|15893302|ref|NP_346651.1| recombination protein F [Clostridium acetobutylicum ATCC 824]
 gi|20978635|sp|Q97N32|RECF_CLOAB RecName: Full=DNA replication and repair protein recF
 gi|15022821|gb|AAK77991.1|AE007513_4 RecF, ABC family ATPase [Clostridium acetobutylicum ATCC 824]
 gi|325507411|gb|ADZ19047.1| recombination protein F [Clostridium acetobutylicum EA 2018]
          Length = 363

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 163/353 (46%), Gaps = 27/353 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  FRNY ++ + F+ +  I  G+N  GKTNILE+I + S G+  R     ++ +
Sbjct: 3   IKNLYLDNFRNYDNIEIDFNKKVNILTGNNAQGKTNILESIFYCSLGKSHRTNKDKELIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                    F R+       D  I+++       + + IN + ++ + EL     +    
Sbjct: 63  WDKD---EAFIRLNLSRKPLDKKIEIKIFKG-GKKGININSIKLKKISELFGIFNVVMFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   +I       RR+FLD  +  +D R+  +++ + +++  RN +L  + + ++   S 
Sbjct: 119 PEDLKIVKESPGHRRKFLDMEISKLDHRYYYKLVQYNKILDQRNIMLRNKKFLNNDMISV 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL-- 243
            + Q+++ G  +  +R++ +N L+       +K    H     +    GK +  F  L  
Sbjct: 179 YDEQLSKFGSSLIESRIKYLNKLN-------EKGKIIH-----SDITKGKEEIEFTYLTH 226

Query: 244 ---KEEYAKKLF----DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
              +E  +++LF    D  K D     T +GPHR D  +   +     + GS G+Q+  +
Sbjct: 227 VKGRENISEELFSLFKDSYKRDVEKGNTSVGPHRDDFSIK-INGIDARSFGSQGQQRTSV 285

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           + I  A  ++I   +   P+LLLD++ + LDE ++  +   +  I + I  TG
Sbjct: 286 LTIKFASIQIIKEISSETPVLLLDDVLSELDESRQEYILNSLEGIQTLITCTG 338


>gi|294792394|ref|ZP_06757541.1| DNA replication and repair protein RecF [Veillonella sp. 6_1_27]
 gi|294456293|gb|EFG24656.1| DNA replication and repair protein RecF [Veillonella sp. 6_1_27]
          Length = 366

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 162/368 (44%), Gaps = 34/368 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  +++ F+ +  +  G NG GKTNILE+I   + G+  R    +D+
Sbjct: 1   MRIDSLQLFQFRNYKDVQIQFNPEIIVLYGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        + E  +    ++IKL  +  + +R   +ND  I    EL   L    
Sbjct: 61  LMFNVEE-AGIVVKFEKKDTPQKVNIKLFRQGPKDIR---LNDTKIS-QKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN +L E    ++   
Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175

Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KF 236
             W   + A MA   VK  +  ++ IN L  L+               LTG L+     +
Sbjct: 176 EEWDLQL-ADMASFIVKKRLESLKKINLLIDLMNR------------KLTGGLENLTIGY 222

Query: 237 DQSFC------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           +Q +         KE + +++      D     T +GPHR DL   + D       GS G
Sbjct: 223 EQPYMDNGSLEYTKEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQG 281

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ + L+    I +  G  P+LLLD++ + LDE +R  L + +     Q F+T T
Sbjct: 282 QQRTAVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDESRRTNLLQFIHK-RIQTFITTT 340

Query: 351 DKSVFDSL 358
           D   F  L
Sbjct: 341 DIHDFKDL 348


>gi|119475238|ref|ZP_01615591.1| recombination protein F [marine gamma proteobacterium HTCC2143]
 gi|119451441|gb|EAW32674.1| recombination protein F [marine gamma proteobacterium HTCC2143]
          Length = 366

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 156/349 (44%), Gaps = 14/349 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L I+  RN  S+ L   +   I  GDNG GKT++LEAI  LS  + FR      +
Sbjct: 2   VLIRRLEIAGVRNLTSVSLPLLSTINILYGDNGAGKTSVLEAIHLLSSAKSFRGHKLKPL 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123
                 S    F  ++ + G     + +E     SV   +++    +R    L ++L + 
Sbjct: 62  INSDMDSCV-CFGEID-LPGQGFQPVGVERFKASSVPAVIKVAGQTVRSASALAENLPLQ 119

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            +     ++  G    RR+F+D  VF ++ +      + +R ++ RN LL  G  D S  
Sbjct: 120 VICSDTFKLLEGSPAVRRQFMDWGVFHVEHQFHSIWKNAQRCLKQRNSLLRHGRLDDSEL 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           +    ++   G ++++ R    + L  +  E + +       LSL  +     D+S C +
Sbjct: 180 AVWTQELVGFGEQLDVFRKSYFDRLVPIFEETLSRL-LDIDGLSLKYYRGWDSDRSLCDV 238

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLA 302
                  L      D     T  GPHR+DL   Y    A  I   S G+QK+V+  + +A
Sbjct: 239 -------LAANLNRDKEVTHTQAGPHRADLKFRYRSANAADIL--SRGQQKLVVCALRVA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
              L+S   G + + L+D++ + LD   R AL  ++ ++G Q+F+T  D
Sbjct: 290 QGYLLSQEKGRSCVYLIDDLPSELDRGHRKALCMLLEELGCQVFVTCVD 338


>gi|311696596|gb|ADP99469.1| DNA replication and repair protein recF [marine bacterium HP15]
          Length = 375

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 166/361 (45%), Gaps = 20/361 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +KF     FRN +S  + F +   +  G+NG GKT++LEAI +L  GR FR   +  V  
Sbjct: 4   VKF-QTENFRNLSSAPVSFSSSFNMLYGENGSGKTSVLEAIGYLGLGRSFRVNRHQAVVS 62

Query: 67  IGSP--SFFSTF-----ARVEGMEGLADISIKLETRDDRSVR--CLQINDVVIRVVDELN 117
            G    + F        +R  G E   D+  +L    D   +   L+++   +R +  L 
Sbjct: 63  HGEQRLTVFGGLDHGLDSRRHGSE--TDLVHRLGISRDVGQKETMLRVDGEAVRSLSALA 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           KHL +S + P +  + +G   +RR+FLD +VF ++P         +R+   RN+ L  G 
Sbjct: 121 KHLPVSVIDPGVFDVVAGGPGKRRQFLDWLVFHVEPSFGSLWQQCQRVTSQRNQTLRNGR 180

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            D +     + Q A L  +I  AR            + V++   P  +     +  G +D
Sbjct: 181 LDEALMRVWDHQYATLSERITEARAGTFGRFKLAFEKLVREVEVPWTEGLKLEYYPG-WD 239

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S        A+ L D R  +     TL GP+R+D+ + +  + +     S G+QK +++
Sbjct: 240 VS-----RPLAELLVDHRDQERKVGHTLYGPNRADIRLKFQGRPVAETF-SRGQQKTLVI 293

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + +A   ++S+  G     LLD+I+A LDE  R  L   +  +  Q+F+T  ++ + D 
Sbjct: 294 LMKIAQGMVLSD-MGKQVTFLLDDINAELDEGHRAMLAIRLQALRCQVFITSIERPMVDQ 352

Query: 358 L 358
           L
Sbjct: 353 L 353


>gi|330952330|gb|EGH52590.1| recombination protein F [Pseudomonas syringae Cit 7]
          Length = 367

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 163/345 (47%), Gaps = 16/345 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  IF G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINIFYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++     +I+  R   I AL   + E    E      L+L+ +     ++   A+    A
Sbjct: 182 ELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRGWDKEKELSAV---LA 237

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
             L   ++M      T  GP R+DL +      A  I   S G+QK+V+  + +A   L+
Sbjct: 238 SSLHRDQQMG----HTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|257417429|ref|ZP_05594423.1| RecF protein [Enterococcus faecalis AR01/DG]
 gi|257159257|gb|EEU89217.1| RecF protein [Enterococcus faecalis ARO1/DG]
          Length = 375

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 167/355 (47%), Gaps = 18/355 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A++ G+      ++ LE       R  ++N +  + +      L +  
Sbjct: 61  --IG---WEQATAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +       D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235
            +   +  Q+AE G K+  AR+  +  L        QK    H + +LT           
Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQK--ISHGRETLTIDYASSIPIDN 233

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            D S  AL+ +  ++L + RK +     T +GPHR DL+     + +   +GS G+Q+  
Sbjct: 234 TDLSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTT 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            + I LA   L+ + TG  P+LLLD++ + LD +++  L   + +   Q F+T T
Sbjct: 293 ALSIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 346


>gi|29374665|ref|NP_813817.1| recombination protein F [Enterococcus faecalis V583]
 gi|227518105|ref|ZP_03948154.1| recombination protein F [Enterococcus faecalis TX0104]
 gi|227555688|ref|ZP_03985735.1| recombination protein F [Enterococcus faecalis HH22]
 gi|229547126|ref|ZP_04435851.1| recombination protein F [Enterococcus faecalis TX1322]
 gi|229550696|ref|ZP_04439421.1| recombination protein F [Enterococcus faecalis ATCC 29200]
 gi|255971552|ref|ZP_05422138.1| DNA replication and repair protein recF [Enterococcus faecalis T1]
 gi|255974525|ref|ZP_05425111.1| DNA replication and repair protein recF [Enterococcus faecalis T2]
 gi|256618524|ref|ZP_05475370.1| RecF protein [Enterococcus faecalis ATCC 4200]
 gi|256761857|ref|ZP_05502437.1| DNA replication and repair protein recF [Enterococcus faecalis T3]
 gi|256854984|ref|ZP_05560345.1| recombination protein F [Enterococcus faecalis T8]
 gi|256960821|ref|ZP_05564992.1| RecF protein [Enterococcus faecalis Merz96]
 gi|256963986|ref|ZP_05568157.1| RecF protein [Enterococcus faecalis HIP11704]
 gi|257078689|ref|ZP_05573050.1| RecF protein [Enterococcus faecalis JH1]
 gi|257081350|ref|ZP_05575711.1| recombination protein F [Enterococcus faecalis E1Sol]
 gi|257084007|ref|ZP_05578368.1| recombination protein F [Enterococcus faecalis Fly1]
 gi|257087837|ref|ZP_05582198.1| RecF protein [Enterococcus faecalis D6]
 gi|257088489|ref|ZP_05582850.1| recombination protein recF [Enterococcus faecalis CH188]
 gi|257418839|ref|ZP_05595833.1| recombination protein F recF [Enterococcus faecalis T11]
 gi|257421346|ref|ZP_05598336.1| recombination protein F [Enterococcus faecalis X98]
 gi|293382659|ref|ZP_06628587.1| DNA replication and repair protein RecF [Enterococcus faecalis
           R712]
 gi|293387929|ref|ZP_06632465.1| DNA replication and repair protein RecF [Enterococcus faecalis
           S613]
 gi|294781252|ref|ZP_06746599.1| DNA replication and repair protein RecF [Enterococcus faecalis
           PC1.1]
 gi|300861825|ref|ZP_07107905.1| DNA replication and repair protein RecF [Enterococcus faecalis
           TUSoD Ef11]
 gi|307268920|ref|ZP_07550284.1| recombination protein F [Enterococcus faecalis TX4248]
 gi|307274015|ref|ZP_07555225.1| recombination protein F [Enterococcus faecalis TX0855]
 gi|307284062|ref|ZP_07564232.1| recombination protein F [Enterococcus faecalis TX0860]
 gi|307296593|ref|ZP_07576413.1| recombination protein F [Enterococcus faecalis TX0411]
 gi|312901293|ref|ZP_07760576.1| recombination protein F [Enterococcus faecalis TX0470]
 gi|312903110|ref|ZP_07762291.1| recombination protein F [Enterococcus faecalis TX0635]
 gi|312908811|ref|ZP_07767750.1| recombination protein F [Enterococcus faecalis DAPTO 512]
 gi|312951717|ref|ZP_07770611.1| recombination protein F [Enterococcus faecalis TX0102]
 gi|312979547|ref|ZP_07791229.1| recombination protein F [Enterococcus faecalis DAPTO 516]
 gi|51316408|sp|Q839Z2|RECF_ENTFA RecName: Full=DNA replication and repair protein recF
 gi|29342123|gb|AAO79889.1| DNA replication and repair protein RecF [Enterococcus faecalis
           V583]
 gi|227074439|gb|EEI12402.1| recombination protein F [Enterococcus faecalis TX0104]
 gi|227175198|gb|EEI56170.1| recombination protein F [Enterococcus faecalis HH22]
 gi|229304129|gb|EEN70125.1| recombination protein F [Enterococcus faecalis ATCC 29200]
 gi|229307708|gb|EEN73695.1| recombination protein F [Enterococcus faecalis TX1322]
 gi|255962570|gb|EET95046.1| DNA replication and repair protein recF [Enterococcus faecalis T1]
 gi|255967397|gb|EET98019.1| DNA replication and repair protein recF [Enterococcus faecalis T2]
 gi|256598051|gb|EEU17227.1| RecF protein [Enterococcus faecalis ATCC 4200]
 gi|256683108|gb|EEU22803.1| DNA replication and repair protein recF [Enterococcus faecalis T3]
 gi|256709497|gb|EEU24544.1| recombination protein F [Enterococcus faecalis T8]
 gi|256951317|gb|EEU67949.1| RecF protein [Enterococcus faecalis Merz96]
 gi|256954482|gb|EEU71114.1| RecF protein [Enterococcus faecalis HIP11704]
 gi|256986719|gb|EEU74021.1| RecF protein [Enterococcus faecalis JH1]
 gi|256989380|gb|EEU76682.1| recombination protein F [Enterococcus faecalis E1Sol]
 gi|256992037|gb|EEU79339.1| recombination protein F [Enterococcus faecalis Fly1]
 gi|256995867|gb|EEU83169.1| RecF protein [Enterococcus faecalis D6]
 gi|256997301|gb|EEU83821.1| recombination protein recF [Enterococcus faecalis CH188]
 gi|257160667|gb|EEU90627.1| recombination protein F recF [Enterococcus faecalis T11]
 gi|257163170|gb|EEU93130.1| recombination protein F [Enterococcus faecalis X98]
 gi|291079965|gb|EFE17329.1| DNA replication and repair protein RecF [Enterococcus faecalis
           R712]
 gi|291082666|gb|EFE19629.1| DNA replication and repair protein RecF [Enterococcus faecalis
           S613]
 gi|294451715|gb|EFG20170.1| DNA replication and repair protein RecF [Enterococcus faecalis
           PC1.1]
 gi|295112343|emb|CBL30980.1| DNA replication and repair protein RecF [Enterococcus sp. 7L76]
 gi|300848350|gb|EFK76107.1| DNA replication and repair protein RecF [Enterococcus faecalis
           TUSoD Ef11]
 gi|306495929|gb|EFM65517.1| recombination protein F [Enterococcus faecalis TX0411]
 gi|306503433|gb|EFM72682.1| recombination protein F [Enterococcus faecalis TX0860]
 gi|306509323|gb|EFM78383.1| recombination protein F [Enterococcus faecalis TX0855]
 gi|306514728|gb|EFM83279.1| recombination protein F [Enterococcus faecalis TX4248]
 gi|310625249|gb|EFQ08532.1| recombination protein F [Enterococcus faecalis DAPTO 512]
 gi|310630290|gb|EFQ13573.1| recombination protein F [Enterococcus faecalis TX0102]
 gi|310633501|gb|EFQ16784.1| recombination protein F [Enterococcus faecalis TX0635]
 gi|311287729|gb|EFQ66285.1| recombination protein F [Enterococcus faecalis DAPTO 516]
 gi|311291670|gb|EFQ70226.1| recombination protein F [Enterococcus faecalis TX0470]
 gi|315026674|gb|EFT38606.1| recombination protein F [Enterococcus faecalis TX2137]
 gi|315030119|gb|EFT42051.1| recombination protein F [Enterococcus faecalis TX4000]
 gi|315033553|gb|EFT45485.1| recombination protein F [Enterococcus faecalis TX0017]
 gi|315143592|gb|EFT87608.1| recombination protein F [Enterococcus faecalis TX2141]
 gi|315148270|gb|EFT92286.1| recombination protein F [Enterococcus faecalis TX4244]
 gi|315151294|gb|EFT95310.1| recombination protein F [Enterococcus faecalis TX0012]
 gi|315153720|gb|EFT97736.1| recombination protein F [Enterococcus faecalis TX0031]
 gi|315155120|gb|EFT99136.1| recombination protein F [Enterococcus faecalis TX0043]
 gi|315158750|gb|EFU02767.1| recombination protein F [Enterococcus faecalis TX0312]
 gi|315163334|gb|EFU07351.1| recombination protein F [Enterococcus faecalis TX0645]
 gi|315168223|gb|EFU12240.1| recombination protein F [Enterococcus faecalis TX1341]
 gi|315573988|gb|EFU86179.1| recombination protein F [Enterococcus faecalis TX0309B]
 gi|315578842|gb|EFU91033.1| recombination protein F [Enterococcus faecalis TX0630]
 gi|315581939|gb|EFU94130.1| recombination protein F [Enterococcus faecalis TX0309A]
 gi|323479243|gb|ADX78682.1| DNA replication and repair protein recF [Enterococcus faecalis 62]
 gi|327533857|gb|AEA92691.1| recombination protein F [Enterococcus faecalis OG1RF]
          Length = 375

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 167/355 (47%), Gaps = 18/355 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A++ G+      ++ LE       R  ++N +  + +      L +  
Sbjct: 61  --IG---WEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +       D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235
            +   +  Q+AE G K+  AR+  +  L        QK    H + +LT           
Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQK--ISHGRETLTIDYASSIPIDN 233

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            D S  AL+ +  ++L + RK +     T +GPHR DL+     + +   +GS G+Q+  
Sbjct: 234 TDLSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTT 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            + I LA   L+ + TG  P+LLLD++ + LD +++  L   + +   Q F+T T
Sbjct: 293 ALSIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 346


>gi|220915126|ref|YP_002490430.1| DNA replication and repair protein RecF [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|254790458|sp|B8J6Y3|RECF_ANAD2 RecName: Full=DNA replication and repair protein recF
 gi|219952980|gb|ACL63364.1| DNA replication and repair protein RecF [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 372

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 166/359 (46%), Gaps = 14/359 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L++ +FRN A++ L    + T+ +G+NG GKTN+LEAI FL+  +  R    A++
Sbjct: 1   MKLLSLHVQDFRNLAAVELAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+    +     EG  G+  +++++      +    +      R+ D       + +
Sbjct: 61  VRFGAEQ-GAVAGDFEGPGGVRRVAVQVAAGGRTATLDGKALGSGARLDDYFEGLASVCF 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
               +  + +G    RRRFLDR  F   P       ++ R +R RN  L  G  +    +
Sbjct: 120 SPDDLLLVKAGPD-GRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRAGPAEVE--A 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-----HIKLSLTGFLDGKFDQS 239
           S    +   G +I + R +++  L+  +     + + P     H+     G +D +  ++
Sbjct: 177 SFREPLVRAGARILVRRRDLVAELAPRLQAAFAEISGPAAPEAHLAYRAAGGVDVEHPEA 236

Query: 240 FCALKEEYAKKLFDGR-KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
             A +  +A    + R + D     T  GPH  DL++    K   + +GS G+Q+ +++ 
Sbjct: 237 EVAARLAHA---LEARLERDREKGFTSAGPHMDDLVLALGGKGARL-YGSQGQQRALVLA 292

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           + +A    +    G  P+LLLD++S+ LD  K   L   +  + +Q F+T TD+ + + 
Sbjct: 293 LKIAEIENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTSTDRRLIEP 351


>gi|209524390|ref|ZP_03272939.1| DNA replication and repair protein RecF [Arthrospira maxima CS-328]
 gi|209495181|gb|EDZ95487.1| DNA replication and repair protein RecF [Arthrospira maxima CS-328]
          Length = 379

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 181/363 (49%), Gaps = 20/363 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++ +FRNY +  + FDA  TI VG+N  GK+N+LEA+  LS  +  R     D+  
Sbjct: 3   LKTLHLRQFRNYEAQDVAFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRVNRDRDLV- 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLRISWL 125
           + + +     A +E   G  D+++ L ++  R+V    IN   V R +D L+    + + 
Sbjct: 62  LDNHAIAQITATLERDSGTLDLALTLRSQGRRTV---AINGQSVKRHLDFLSILNVVQFS 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
              +D +  G   ERR +LDR++  ++P +   +  + R++R RN LL  G    +    
Sbjct: 119 SLDLD-LVRGSPAERRHWLDRLLIQLEPVYAYMLDQYNRVLRQRNALLKRGPMAGTTPEE 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD----GKFDQ 238
           +   +AQ+A  G ++   R  +I  L  L   + Q  +     L++T   +     K  Q
Sbjct: 178 LAVWDAQLAVAGARVLRRRDRVIERLEPLARMWHQSISGSRETLNITYQPNIEPPSKQQQ 237

Query: 239 SFCALKEEYAKKLF----DGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            +     E  ++ F      R +   S+  TL+GPHR D+I    ++     +GS+G+Q+
Sbjct: 238 RWSRWPPEQVQQAFLTKISTRAIAERSQGLTLVGPHRDDVIFT-INQTPARQYGSSGQQR 296

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            +++ + LA  +LI +  G  P+LLLD++ A LD  ++N L + +++   Q  +T T   
Sbjct: 297 TLVLALKLAELQLIESVIGEPPLLLLDDVLAELDPHRQNQLLQAISE-RFQTLITTTHLG 355

Query: 354 VFD 356
            FD
Sbjct: 356 AFD 358


>gi|307276496|ref|ZP_07557616.1| recombination protein F [Enterococcus faecalis TX2134]
 gi|307287178|ref|ZP_07567249.1| recombination protein F [Enterococcus faecalis TX0109]
 gi|306501776|gb|EFM71067.1| recombination protein F [Enterococcus faecalis TX0109]
 gi|306506823|gb|EFM75973.1| recombination protein F [Enterococcus faecalis TX2134]
 gi|315165724|gb|EFU09741.1| recombination protein F [Enterococcus faecalis TX1302]
          Length = 375

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 167/355 (47%), Gaps = 18/355 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A++ G+      ++ LE       R  ++N +  + +      L +  
Sbjct: 61  --IG---WEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +       D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQTVLKQRNQYLKQLAEKKQTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235
            +   +  Q+AE G K+  AR+  +  L        QK    H + +LT           
Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQK--ISHGRETLTIDYASSIPIDN 233

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            D S  AL+ +  ++L + RK +     T +GPHR DL+     + +   +GS G+Q+  
Sbjct: 234 TDLSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTT 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            + I LA   L+ + TG  P+LLLD++ + LD +++  L   + +   Q F+T T
Sbjct: 293 ALSIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 346


>gi|90019652|ref|YP_525479.1| RecF protein [Saccharophagus degradans 2-40]
 gi|123278091|sp|Q21PV3|RECF_SACD2 RecName: Full=DNA replication and repair protein recF
 gi|89949252|gb|ABD79267.1| DNA replication and repair protein RecF [Saccharophagus degradans
           2-40]
          Length = 367

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 164/368 (44%), Gaps = 26/368 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN   + +       +  G+NG GKT++LEAIS L+  R FR   Y  + +   
Sbjct: 7   LKVQQFRNLGLVDITPSPTLNLVYGENGSGKTSLLEAISVLAHCRSFRTHKYRRLIQ--- 63

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
               + F     +EG     + ++ R+       +++ +  +   +L  +L +  +    
Sbjct: 64  -DTTTAFTVFATVEGSDAFKVGVQ-REWSGKSTAKLDGLSAKSSAQLATNLPVQIIDAHT 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             +  G S  RR+F D +VF +    +    ++ + ++ RN LL       S     + Q
Sbjct: 122 FALLEGGSKARRKFFDWLVFHVKHEFKTAWANYVKCVKQRNSLLRHDKIAYSDLRPWDEQ 181

Query: 190 MAELGVKINIARVE----MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +A L   I+  RVE    +I A  +L+ E    +N         G+ +G+          
Sbjct: 182 IAGLAATIDECRVECITPLIQAFKALMGECKFADNVDLTLAYQPGWKEGELS-------- 233

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            + K+L      D     T++GPH+SDL I      A+ +   S G+QK V+  + +A A
Sbjct: 234 -FPKQLEQAFARDRKLGYTILGPHKSDLKITANGSPAVEVL--SRGQQKAVINALHIAEA 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-----N 359
           ++     G  P+ LLD++ + LD +    L   ++++G+Q+F+TG D +   S+     N
Sbjct: 291 QVYKTQIGRTPVFLLDDMPSELDANHIAILSGWLSNLGAQVFVTGVDANKLASVWPLQKN 350

Query: 360 ETAKFMRI 367
           E  K   +
Sbjct: 351 EAIKMFHV 358


>gi|255324006|ref|ZP_05365131.1| DNA replication and repair protein RecF [Corynebacterium
           tuberculostearicum SK141]
 gi|255298863|gb|EET78155.1| DNA replication and repair protein RecF [Corynebacterium
           tuberculostearicum SK141]
          Length = 403

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 174/380 (45%), Gaps = 30/380 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++ +FR++  L +      T+FVG NG GKTNI+EAI + +     R +  A + R
Sbjct: 3   VRDLDVRDFRSWPELNVQLGPGITLFVGRNGFGKTNIVEAIGYTAHLSSHRVSYDAPLVR 62

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+ S   S  A  +G E    + IK       +    QIN   +R   EL   ++    
Sbjct: 63  QGADSARVSITAVNQGRELTTHLLIK-----PHAANQAQINRTRLRSPRELLGVVKTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178
            P    +  G    RR +LD ++ +  PR      D++++++ RN LL         GY 
Sbjct: 118 SPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASASLRRGYS 177

Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIKLSL 228
           +S   +++      +AQ+A LG ++  AR+ +++AL   I      +  E+ P H++   
Sbjct: 178 NSDGAAALATLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYSGLAPESRPAHVEYKS 237

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
           T  +D    +   A+      +L   R+ +     +L+GPHR DL+++  D+       S
Sbjct: 238 T--IDTSDREVLEAV---LLTELAAARQREIERGISLVGPHRDDLVLNLGDQPAK-GFAS 291

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +  +    +   
Sbjct: 292 HGETWSYAIALRLAEFNLLRQEGGSDPVLILDDVFAELDAKRRKQLVHLAAEAEQVLITA 351

Query: 349 GTDKSVFDSLNETAKFMRIS 368
             D+ +  +L    ++ R+S
Sbjct: 352 AVDEDLPGNLEPIVRY-RVS 370


>gi|194335185|ref|YP_002016979.1| DNA replication and repair protein RecF [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307662|gb|ACF42362.1| DNA replication and repair protein RecF [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 369

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 168/370 (45%), Gaps = 42/370 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K++ ++   FRN+  L        +I  G N  GKT+ILE + + +  RGF  A  ++ 
Sbjct: 1   MKLQCIHYENFRNHRLLNFEPSYGISILYGPNASGKTSILEGVHYCALTRGFHNALDSEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE-----LNKH 119
               S  F    + ++  E    + +      ++ +           +VD+      ++H
Sbjct: 61  LYFSSDFFVLESSFLDATERATTVRVLYTKEKEKKI-----------IVDKSEIKPFSRH 109

Query: 120 L-RISWLV--PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           + RI  +   P+   I +G   ERRRFLD  +   + R+   ++ ++R+++ RN L+ + 
Sbjct: 110 IGRIPCITFSPAELVIVNGAPAERRRFLDNAICQTNRRYLDDLLAYKRVLQQRNALIGQM 169

Query: 177 YFDSS--------WCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHI- 224
           Y  +         W  S    ++ L   I   R++ +++   L   + + +  +  P I 
Sbjct: 170 YEKTGSQKEMLAIWTDS----LSRLAASIVYTRMQFLSSFLPLFQTLYQLLSPDEHPTIV 225

Query: 225 -KLSLTG-FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
            + SL   F D   DQ    L  ++  K  +  + + +  +T+ GPHR DL+     + I
Sbjct: 226 YRCSLGKVFHDSSIDQ----LYSQFLVKFEETEREEILRGQTMTGPHRDDLLFLLHTREI 281

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              + S G+ ++ L+ + L+  RL S+  G  PI LLD++ + LD    NA+FR++   G
Sbjct: 282 K-KYASQGQMRIFLIALKLSQHRLFSDILGEKPICLLDDLFSELDASHSNAIFRLLETCG 340

Query: 343 SQIFMTGTDK 352
             I  +  +K
Sbjct: 341 QTIITSAENK 350


>gi|156742186|ref|YP_001432315.1| DNA replication and repair protein RecF [Roseiflexus castenholzii
           DSM 13941]
 gi|189039636|sp|A7NF69|RECF_ROSCS RecName: Full=DNA replication and repair protein recF
 gi|156233514|gb|ABU58297.1| DNA replication and repair protein RecF [Roseiflexus castenholzii
           DSM 13941]
          Length = 394

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 184/384 (47%), Gaps = 46/384 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++ +FRNY  L L  +   T+  G N  GKT +LEAI FL+  R  R  +  ++ R
Sbjct: 3   VTHLSLRDFRNYERLDLNLEPGVTLLYGPNAAGKTTVLEAIYFLATTRSPRAGADRELVR 62

Query: 67  ------IGSPSFFSTFARVEGMEGLADISIKLETRDDR--------SVRCLQINDVVIRV 112
                 +G P F      V   +G   + + ++ R +         +++ ++I+   +R 
Sbjct: 63  FEAQGDLGVPPFARLVCDVVRADGYVRLEVVVQRRAEEESAIGATPTIKTVRIDRKAVRA 122

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           +D L  +LR+    P+   + +G   ERRR+LD  +  ID R+ R +  ++++++ RN L
Sbjct: 123 LD-LVGNLRVVLFTPADIALVTGAPAERRRYLDVTLSQIDGRYVRTLAHYQKVVQQRNSL 181

Query: 173 LT---EG-----YFDSS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           L    EG     Y D     W   +    A L ++  +  V  +NAL+  +   +   + 
Sbjct: 182 LRAWREGRRPLRYADDELAFWDRELAMAGAYL-LRERLHAVVDLNALAGPLYCRMSGGDT 240

Query: 222 PHIKLSLTGFLDG--------KFDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSD 272
           P + L+    + G          +Q+F A    +  +L D    D + R +TLIGPHR D
Sbjct: 241 P-LTLAYQSSVAGIDSVTDSRAIEQAFLA----HLTRLRD----DEIGRGQTLIGPHRDD 291

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           L++      I  A+GS G+Q+   + + L  A+L+   TG AP+LLLD++ + LD ++R+
Sbjct: 292 LLIAVGGVPIG-AYGSRGQQRSATLSLKLGEAKLMRIRTGDAPVLLLDDLLSELDAERRS 350

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFD 356
            +  I+     Q  +T T    FD
Sbjct: 351 HVQDILERPDQQTIVTATGTDDFD 374


>gi|39995113|ref|NP_951064.1| recombination protein F [Geobacter sulfurreducens PCA]
 gi|81703762|sp|Q74H90|RECF_GEOSL RecName: Full=DNA replication and repair protein recF
 gi|39981875|gb|AAR33337.1| recF protein [Geobacter sulfurreducens PCA]
 gi|307634642|gb|ADI82866.2| DNA replication and repair protein RecF [Geobacter sulfurreducens
           KN400]
          Length = 365

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 158/357 (44%), Gaps = 19/357 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + IS FRN   + + FD +  +  G NG GKT++LEAI  L   + FR A   D+
Sbjct: 1   MHLNAIAISAFRNIDHVEISFDRRFNVLHGANGQGKTSVLEAIYLLGTMKSFRMAKAHDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +P        V G    A +  ++     R  R  +I+   +  + +    +    
Sbjct: 61  IAWNAPHSL-----VRGDIDKAGVRREIALYLGREGRKARIDRKPVTKLADFFGAVNAVV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RRR+LDR +F  D  +     ++ RL++ RN LL  G  D     
Sbjct: 116 FSPEEIGMARGGPELRRRYLDRAIFNGDLGYLLLHHEYHRLLKQRNALLRRGERDGLEVW 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT----GFLDGKFDQSF 240
           +I  Q+AE G ++ + R   ++ +  L+ ++ +       ++ L     G    + ++  
Sbjct: 176 TI--QLAEAGARLMVKRRAYLSQIEPLVRQFYRDIAGAGQEVGLAYRCHGLASAEGERDC 233

Query: 241 CALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVG 298
            A   E    L    + + + R  T +GPHR D  VD+      I  HGS GEQ+  ++ 
Sbjct: 234 AAALRE----LMAAHEAEELRRGATGVGPHRDD--VDFILNGRVIRHHGSQGEQRSFVLA 287

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           + +A    +    G  P+LLLD+IS+ LD ++   L   +     Q+F+T TD S  
Sbjct: 288 VKMAEIEYLERLNGAPPVLLLDDISSELDPERNANLMTFLRGKRMQVFITTTDVSTL 344


>gi|91791372|ref|YP_561023.1| DNA replication and repair protein RecF [Shewanella denitrificans
           OS217]
 gi|123357292|sp|Q12TC6|RECF_SHEDO RecName: Full=DNA replication and repair protein recF
 gi|91713374|gb|ABE53300.1| DNA replication and repair protein RecF [Shewanella denitrificans
           OS217]
          Length = 360

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 173/359 (48%), Gaps = 23/359 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++I  FRN A+  L+      +  G NG GKT++LEAI FL  GR FR      V
Sbjct: 1   MSLQRISIESFRNIAAANLLPSEGLNLIYGHNGSGKTSVLEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R       + FA++    G + + ++     +  V+   I+   ++ +  L + L I  
Sbjct: 61  IRHDEDK-LTLFAQLSHHNGESKVGLRRHRNGEIEVK---IDGDRVKRLSTLAETLPIQV 116

Query: 125 LVP-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSS 181
           + P S   +F G    RR+F+D   F  D +      + +R+++ RN+LL  G  Y +  
Sbjct: 117 ITPESFSLLFEG-PKARRQFVDWGAFHSDEQFYTAWSNVKRILKQRNQLLRNGSSYGNIL 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +      + AE   +I    V+ +N  L  +I E++ + N   I +S T   D K D + 
Sbjct: 176 FWDKELVRYAEQVTQIRNHYVDSLNELLKGIIEEFLPQVN---ISISFTRGWDSKTDLAL 232

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+ +Y++ L  G         T+ GPH++DL +   +  +  A  S G+ K+++  + 
Sbjct: 233 L-LESQYSRDLATG--------HTVSGPHKADLRLRVGNLPVQDAL-SRGQLKLLVCALR 282

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL 358
           +A  +L+        I L+D++ + LD   R  L + +T+ G+QIF+T  +  ++ DSL
Sbjct: 283 IAQGKLLKQQKDKQSIYLVDDLPSELDAQHRQLLLKQLTETGAQIFVTAIEPAAIVDSL 341


>gi|29830862|ref|NP_825496.1| recombination protein F [Streptomyces avermitilis MA-4680]
 gi|51316400|sp|Q82FD5|RECF_STRAW RecName: Full=DNA replication and repair protein recF
 gi|29607975|dbj|BAC72031.1| putative DNA recombination and repair protein [Streptomyces
           avermitilis MA-4680]
          Length = 373

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 161/359 (44%), Gaps = 23/359 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R+G+  +      R +    L    ++LE    ++ R        +R  D L   +R  
Sbjct: 61  VRMGAERAIIRAQVRQDERRQL----VELELNPGKANRARINRSSQVRPRDVLGI-VRTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178
              P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL          
Sbjct: 116 LFAPEDLALIKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKTAALARRHG 175

Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGF 231
               D S     +  +A  G ++   R+++I AL  L     E +     P I L     
Sbjct: 176 GRSMDLSTLDVWDQHLARAGAELLAQRLDLIAALQPLADKAYEQLAPGGGP-IALEYKPS 234

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
             G+   +  AL E+    L + RK +     TL+GP R +L++    +     + S GE
Sbjct: 235 APGEA-HTRDALYEQLMAALAEARKQEIERGVTLVGPQRDELLLK-LGQLPAKGYASHGE 292

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
                + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T  
Sbjct: 293 SWSYALALRLASYDLL-RAEGNEPVLVLDDVFAELDTRRRERLAELVAP-GEQVLVTAA 349


>gi|330500917|ref|YP_004377786.1| recombination protein F [Pseudomonas mendocina NK-01]
 gi|328915203|gb|AEB56034.1| recombination protein F [Pseudomonas mendocina NK-01]
          Length = 367

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 156/348 (44%), Gaps = 16/348 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           + ++  RN  S  L    +  I  G NG GKT++LEAI  L   R FR      V     
Sbjct: 6   ITVTAVRNLHSSSLQPSPRINILYGANGSGKTSVLEAIHLLGLARSFRSTRLQPVIHYEQ 65

Query: 70  PSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           P+  + F +V+  EG  +++ I   +RD +    ++I+    R   +L   L +  + P 
Sbjct: 66  PAC-TIFGQVQLAEGGYSNLGI---SRDRQGQLQIRIDGQNARSAAQLADLLPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++ R        ++ +R RN  L  G  D +  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEHRFLGAWQRLQKALRQRNSWLRHGTLDGASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++     +I+  R   I AL   + E    E      LSL+ +     D+    L E  A
Sbjct: 182 ELCGASEEIDTYRRAYIQALKP-VFERTLAELLRLEGLSLSYYRGWDKDRE---LSEVLA 237

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARLI 307
             L   +++      T  GP R+DL +      A  I   S G+QK+V+  + +A   L+
Sbjct: 238 TSLLRDQQLG----HTQAGPQRADLRLRLAGHNAAEIL--SRGQQKLVVCALRIAQGHLV 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           +       I L+D++ + LDE  R AL R++ D+  Q+F+T  D  + 
Sbjct: 292 NEAKRGQCIYLVDDLPSELDEQHRQALCRLLEDLRCQVFITCVDHELL 339


>gi|46447340|ref|YP_008705.1| putative DNA replication and repair protein recF [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|51316228|sp|Q6MAG9|RECF_PARUW RecName: Full=DNA replication and repair protein recF
 gi|46400981|emb|CAF24430.1| putative DNA replication and repair protein recF [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 359

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 158/364 (43%), Gaps = 18/364 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRNY    L F  Q  +  G N  GKT +LEAI  L  GR FR + Y D+
Sbjct: 1   MTLRSLYLQHFRNYEEAYLEFSPQFNLICGPNAKGKTTLLEAIHCLMIGRSFRTSHYPDL 60

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            +    SFF  + F +  G+E    +     T D    R +  N   +  +  L   +  
Sbjct: 61  IQQQFESFFLEAQFYK-HGIE--QTLKFGFHTTD----RKIIYNSTPLATLSNLLGLIPG 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDS 180
             + P   ++  G    RR+FLD  +  +DP +   +  + R ++ RN LL   +     
Sbjct: 114 VIITPDDVQLVKGSPQLRRQFLDIQIAQVDPLYVHHLNRYGRALKQRNHLLKMKQQISID 173

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW    E +M      +   R + I  L +L  +Y    +  +  L+L        + S 
Sbjct: 174 SW----EQEMTHSAAYLIQQRYQTITHLQNLAQKYYHLLSGENDLLTLEYRSIANSNLSI 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +K+   K+L   R+ +     TL GPH+ DL V    + I     S G+Q+  +  + 
Sbjct: 230 DEIKKLLVKQLCKNRQREMQIGYTLSGPHKDDLFVAIGGRDIRYF-ASEGQQRSCVNALH 288

Query: 301 LAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            A   RL     G  P+ ++D+I   LD ++++ L   +  +G Q+F+T TD    D ++
Sbjct: 289 FAEWNRLHQRGDGDFPLFMIDDIGMSLDSNRKDRLVEQLQSVG-QVFLTTTDPKFLDHID 347

Query: 360 ETAK 363
              K
Sbjct: 348 ADKK 351


>gi|313680849|ref|YP_004058588.1| DNA replication and repair protein recf [Oceanithermus profundus
           DSM 14977]
 gi|313153564|gb|ADR37415.1| DNA replication and repair protein RecF [Oceanithermus profundus
           DSM 14977]
          Length = 344

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 157/344 (45%), Gaps = 29/344 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L    FRN  SL LV        VG N  GKTN+LEAI FL+ G G  R + AD  R G+
Sbjct: 6   LRQQNFRNLTSLELVLPPGPLALVGPNASGKTNLLEAI-FLALG-GEVRGALADRVRFGA 63

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +    FA VE   G+    ++ E R  R  R +++N+     + EL ++    W+ P  
Sbjct: 64  -AEARLFAEVETQLGV----VRFEQRFGRGGREIRLNEAPA-SLRELAEYAGAVWIRPED 117

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188
             +  G   ERRR+LD+ +    PR+R  +  +E+ +R RN  L T       W      
Sbjct: 118 IALVRGGPEERRRWLDQALMRFSPRYRALLSAYEKTLRQRNAALKTSPRGLGVWNE---- 173

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++A  G ++   R  ++  L+ L     ++ +   + L L             A  E  A
Sbjct: 174 RLAGYGEQVLHWRRRILERLAPLAAAAYRELDAAPLVLEL----------RETAPPERLA 223

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           + L    + +     TL GPHR D  L++   D    +   S GE + V + + LA  RL
Sbjct: 224 EVLEANLQEELERGVTLAGPHRDDVRLLLGGLD---AVKFASRGEARSVALALRLAEHRL 280

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           ++   G  P+LL+D+ +A LD  ++ AL    + +  Q  ++GT
Sbjct: 281 LAEHHGEPPLLLVDDFAAELDARRQAALLAYASGL-PQAVLSGT 323


>gi|322381375|ref|ZP_08055378.1| recF-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154951|gb|EFX47222.1| recF-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 383

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 166/377 (44%), Gaps = 28/377 (7%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N + ++ L +  +RNY  + LV D    IFVG N  GKTN+LE+I  L+  +  R     
Sbjct: 5   NALFLQRLTLHHYRNYQHVELVTDRNVNIFVGPNAQGKTNLLESIYVLALTKSHRTHHDK 64

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++ +    S       VE   G   + + + ++  ++    +IN +  + + +    L +
Sbjct: 65  ELIQWEGESALLQ-GDVEKKYGSYSLDLAISSKGKKA----KINGLEQKKLSQFIGALNV 119

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
               P    I  G    RRRFLD  +  + P +   +  +++++  RN +L + +   S 
Sbjct: 120 VLFAPEDLEIIKGNPGIRRRFLDMEIGQVYPGYLYDLSQYQKVLAQRNNMLKKAFPAPSA 179

Query: 183 CSSI-----EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKF 236
             +        Q+A+ GVKI   R   I  L +   +        H  ++  G  L  ++
Sbjct: 180 EHAAMLDIWNEQLAQFGVKIMKKRQNFIKKLQNWAEQI-------HDGITNGGEELTIRY 232

Query: 237 DQSFC--------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
             SF          L E++  KL   +  +     +L GPHR DL+    DK +   +GS
Sbjct: 233 QPSFAVQDFEDETVLMEQFMIKLSQIKDQEIRRGVSLAGPHRDDLLFYINDKEVQ-TYGS 291

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFM 347
            G+Q+   + + LA   LI +  G  PILLLD++ + LDE ++  L +     + + I  
Sbjct: 292 QGQQRTTALSLKLAEIELIHSEVGEYPILLLDDVLSELDEYRQTQLIQTFQKKVQTFITT 351

Query: 348 TGTDKSVFDSLNETAKF 364
           TG +    D L + + F
Sbjct: 352 TGLESVHLDQLEDASVF 368


>gi|313893465|ref|ZP_07827035.1| DNA replication and repair protein RecF [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313441908|gb|EFR60330.1| DNA replication and repair protein RecF [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 366

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 163/368 (44%), Gaps = 34/368 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  +++ F+ +  +  G NG GKTNILE+I   + G+  R    +D+
Sbjct: 1   MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +        + E  +    ++IKL  +  + +R   +ND  I    EL   L    
Sbjct: 61  LMFNAEE-AGIVVKFEKKDTPQKVNIKLFRQGAKDIR---LNDTKIS-QKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN +L E    ++   
Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNNIPL 175

Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KF 236
             W   + A MA   VK  +  ++ IN L  L+               LTG L+     +
Sbjct: 176 EEWDLQL-ADMASFIVKKRLESLKKINLLIDLMNR------------KLTGGLENLTIGY 222

Query: 237 DQSFCALKE-EYAKKLFDGR-----KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           +Q +      EY K+ F  R       D     T +GPHR DL   + D       GS G
Sbjct: 223 EQPYMENGSLEYTKEGFYERIKAALPQDRHRLTTSVGPHRDDLRF-FSDAMDLKKFGSQG 281

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ + L+    I +  G  P+LLLD++ + LDE +R  L + +     Q F+T T
Sbjct: 282 QQRTAVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDESRRANLLQFIHK-RIQTFITTT 340

Query: 351 DKSVFDSL 358
           D   F  L
Sbjct: 341 DIHDFKDL 348


>gi|315659992|ref|ZP_07912850.1| recombination protein F [Staphylococcus lugdunensis M23590]
 gi|315494893|gb|EFU83230.1| recombination protein F [Staphylococcus lugdunensis M23590]
          Length = 371

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 167/379 (44%), Gaps = 29/379 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY ++ L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FKAEYAKIEGELNYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +  +    D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQYGHKTDV 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q A+  + + + R   I+ L +L            E +     P IKLS   
Sbjct: 176 TMLEVLNQQFAQYALNVTLRREHFIHDLEALAQPIHAGITNDKEVLSLNYLPSIKLS--- 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D   D+S   L  E    L D    +      L GPHR DL  +  +      +GS G
Sbjct: 233 --DTSQDESI--LLSEVITFLNDNLDREIDRGVCLFGPHRDDLGFN-VNSMDAQTYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346

Query: 351 DKSVFD-SLNETAKFMRIS 368
                D  +   A+  RI+
Sbjct: 347 SVDGIDHDIMNNARLYRIN 365


>gi|152973858|ref|YP_001373375.1| recombination protein F [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189039617|sp|A7GJS2|RECF_BACCN RecName: Full=DNA replication and repair protein recF
 gi|152022610|gb|ABS20380.1| DNA replication and repair protein RecF [Bacillus cytotoxicus NVH
           391-98]
          Length = 373

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 158/352 (44%), Gaps = 19/352 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEDLNLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   + +++G     + S+ LE    +  +  ++N++  + + +    + +    
Sbjct: 63  -----WDEDYGKIKGRLQKRNSSVSLELNISKKGKKAKLNELEQQKLSQYIGEMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSWCS 184
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL   +G  + +   
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKAMQGKNEETMLD 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKFDQ 238
               Q+ E G KI   R E ++    L+ E+              +++     +D     
Sbjct: 178 VFTLQLIEHGTKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 233

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 234 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 292

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + LA   LI       PILLLD++ + LD+ +++ L   +     Q F+T T
Sbjct: 293 LKLAEIELIYAEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT 343


>gi|255527583|ref|ZP_05394447.1| DNA replication and repair protein RecF [Clostridium
           carboxidivorans P7]
 gi|296186781|ref|ZP_06855182.1| DNA replication and repair protein RecF [Clostridium
           carboxidivorans P7]
 gi|255508716|gb|EET85092.1| DNA replication and repair protein RecF [Clostridium
           carboxidivorans P7]
 gi|296048495|gb|EFG87928.1| DNA replication and repair protein RecF [Clostridium
           carboxidivorans P7]
          Length = 363

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 163/352 (46%), Gaps = 21/352 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK+L +  FRNY  L +  +    +F+G+N  GKTNILE+I + S G+  R     ++  
Sbjct: 3   IKYLQLINFRNYKELNIELNKNINVFIGNNAQGKTNILESIYYCSIGKSPRTNKDKELIN 62

Query: 67  I-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             G  ++   +   + ++   +I I  E +     + + +N + +  + +L     +   
Sbjct: 63  WNGKEAYIKLYVSKDRIDKKIEIKIFKEGK-----KGVNVNSIKVNKISDLMGVFNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   +I       RR+FLD  +  +  ++   ++ + +++  RN +L +  +D      
Sbjct: 118 SPEDLKIVKESPSHRRKFLDIELCKLSKKYYFNLVQYNKVLNERNVVLRK--WDKKNLDM 175

Query: 186 IEA---QMAELGVKINIARVEMINALSS--LIMEYVQKENFPHIKLS-LTGFLDGKFDQS 239
           ++    Q+A+ G  I   R   +  L+   +I+         +I+ + +TG       +S
Sbjct: 176 LQVYDEQLAKYGAYIVKTRDHYVKKLTEKGIIIHKNITSGSENIEFNYITGV------KS 229

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               +EE    L + R  D   R T  GPHR D  +   +   T ++GS G+Q+  ++ I
Sbjct: 230 IDNSEEEILNLLENNRLKDFEKRITSFGPHRDDFSIK-INGVDTRSYGSQGQQRTSVLTI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             A   +I  T G  P+LLLD++ + LD +++  +   ++DI + I  TG +
Sbjct: 289 KFASLEIIKETIGEYPVLLLDDVLSELDSNRQKYILNSISDIQTFITCTGIE 340


>gi|81427620|ref|YP_394617.1| recombination protein F [Lactobacillus sakei subsp. sakei 23K]
 gi|97180789|sp|Q38ZS1|RECF_LACSS RecName: Full=DNA replication and repair protein recF
 gi|78609259|emb|CAI54306.1| DNA repair and recombination protein RecF (Recombinational DNA
           repair ATPase) [Lactobacillus sakei subsp. sakei 23K]
          Length = 375

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 163/349 (46%), Gaps = 16/349 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L ++ +RNY S+ + F     + +G+N  GKTN+LEAI  L+  R  R  +  ++ +   
Sbjct: 6   LQLNHYRNYESVDVHFSPDTNVLIGENAQGKTNLLEAIYVLALARSHRTNTDRELIQ--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             +   FA++ G+   +     LE    +  +  ++N +    + +    L +    P  
Sbjct: 63  --WHEDFAKITGLVQRSAGKTPLELVLSQKGKKAKVNHLEQAKLSQYIGQLNVVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSS 185
             I  G    RR F+D     +  ++   +  ++ +++ RN+ L +       D  +   
Sbjct: 121 LNIVKGSPAVRRHFIDMEFGQMSSKYLYNISQYKSILKQRNQYLKQLQRRQAKDLVYLGV 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFDQSFCA 242
           +  Q+A  G ++ +AR + +  +     +  Q+       L+    +   + + DQS   
Sbjct: 181 LSDQLAAYGAEVTVARRQFLQQMEKWAQKLHQEITKDREVLTFKYQSQIPEEQLDQSVEE 240

Query: 243 LKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           L +++ + L++ +++  + +  TLIGPHR D+     DK +  A GS G+Q+   + + L
Sbjct: 241 LYQQF-QTLYEKQQIREVEQGTTLIGPHRDDVQFLVNDKDVQ-AFGSQGQQRTTALSVKL 298

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           A   L+   TG  PILLLD++ + LD+ ++  L +   +   Q F+T T
Sbjct: 299 AEIDLMKAQTGEYPILLLDDVLSELDDLRQTHLLKTFQN-KVQTFLTTT 346


>gi|322417548|ref|YP_004196771.1| DNA replication and repair protein RecF [Geobacter sp. M18]
 gi|320123935|gb|ADW11495.1| DNA replication and repair protein RecF [Geobacter sp. M18]
          Length = 364

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 165/353 (46%), Gaps = 21/353 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L ++ FRN  ++ LV   +  +F G+NG GKTN+LE+I  L+  + F++A   ++
Sbjct: 1   MKLIKLKLASFRNLQNIELVPGKKFNVFYGNNGQGKTNLLESIYLLATMKSFKQAKNVEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +F S FA ++G+     ++ ++    ++  +  +I+  +   +D+   +L +  
Sbjct: 61  I-----AFGSEFALIKGVVERDRVTREIALLLEKQGKKAKIDAKLATRLDDFFGNLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
             P    +  G    RRR+LDR VF  D  +     D+ ++++ RN LL   EG     W
Sbjct: 116 FTPEEISMVRGGPDLRRRYLDRAVFTCDLSYLGAYHDYSKILKSRNALLKLGEGSGIEVW 175

Query: 183 CSSIEAQMAELGVKINIARV-EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
              +  Q A+L ++   A + E+   L     E    +    I+  L G +D K      
Sbjct: 176 TEQL-IQSAQLVIERRKAYLAEIGKLLQGFYSEISGNDETVQIEYRLHG-VDEK------ 227

Query: 242 ALKEEYAKKLFDGRKMDSMSRR----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           A  E+ A  L D  K  +   +    T IGPHR DL      ++      S G+Q+  ++
Sbjct: 228 AYAEDPAAALSDALKAHAAEEKRRQTTAIGPHRDDLYFGLNGRSAR-HFASQGQQRSFVL 286

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            + +A    I+      P+LLLD++++ LD ++   L   +     Q+F+T T
Sbjct: 287 ALKMAEIEYITGCFEAPPVLLLDDMTSELDRERNRNLMDFLKKREMQVFITTT 339


>gi|196036149|ref|ZP_03103549.1| DNA replication and repair protein RecF [Bacillus cereus W]
 gi|195991316|gb|EDX55284.1| DNA replication and repair protein RecF [Bacillus cereus W]
          Length = 375

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     D S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRDSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGTKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|197120424|ref|YP_002132375.1| DNA replication and repair protein RecF [Anaeromyxobacter sp. K]
 gi|226737767|sp|B4UJV1|RECF_ANASK RecName: Full=DNA replication and repair protein recF
 gi|196170273|gb|ACG71246.1| DNA replication and repair protein RecF [Anaeromyxobacter sp. K]
          Length = 372

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 165/359 (45%), Gaps = 14/359 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L++ +FRN A++ L    + T+ +G+NG GKTN+LEAI FL+  +  R    A++
Sbjct: 1   MKLLSLHVQDFRNLAAVALAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+    +     EG  G+  +++++      +    +      R+ D       + +
Sbjct: 61  VRFGA-DQGAVAGDFEGPGGVRRVAVQVAAGGRTATLDGKALGSGARLDDYFEGLASVCF 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
               +  + +G    RRRFLDR  F   P       ++ R +R RN  L  G  +    +
Sbjct: 120 SPDDLLLVKAGPD-GRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRAGPAEVE--A 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-----HIKLSLTGFLDGKFDQS 239
           S    +   G ++ + R E++  L+  +     + + P     H+     G +D    ++
Sbjct: 177 SFREPLVRAGARLLVRRRELVAELAPRLQAAFAEISGPEAPEAHLAYRAAGGVDVAHPEA 236

Query: 240 FCALKEEYAKKLFDGR-KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
             A +  +A    + R + D     T  GPH  DL++    K   + +GS G+Q+ +++ 
Sbjct: 237 EVAARLAHA---LEARLERDREKGFTSAGPHMDDLVLALGGKGARL-YGSQGQQRALVLA 292

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           + +A    +    G  P+LLLD++S+ LD  K   L   +  + +Q F+T TD+ + + 
Sbjct: 293 LKIAEIENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTSTDRRLIEP 351


>gi|237801662|ref|ZP_04590123.1| recombination protein F [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024521|gb|EGI04577.1| recombination protein F [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 367

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 16/345 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYDQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +  + + D  +R   I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGVARDRQGDFQIR---IDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D +  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDVASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++ +   +I+  R   I AL   + E    E      L+L+ +    +D+     ++E +
Sbjct: 182 ELCQASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
             L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A   L+
Sbjct: 234 TVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           S       I L+D++ + LDE  R AL R++ ++  Q+F+T  D+
Sbjct: 292 SQVRRGQCIYLVDDLPSELDEHHRQALCRLLEELRCQVFITCVDQ 336


>gi|289677552|ref|ZP_06498442.1| recombination protein F [Pseudomonas syringae pv. syringae FF5]
          Length = 367

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 162/345 (46%), Gaps = 16/345 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++IN    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRINGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++E +
Sbjct: 182 ELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
             L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A   L+
Sbjct: 234 TVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|331004663|ref|ZP_08328125.1| hypothetical protein HMPREF0491_02987 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409590|gb|EGG89030.1| hypothetical protein HMPREF0491_02987 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 363

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 172/367 (46%), Gaps = 19/367 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L + ++RNY +L +   +   IF GDN  GKTNILE+I   +  +  R +   D+ +
Sbjct: 3   IESLELKDYRNYENLDIKLSSGVNIFYGDNAQGKTNILESIYLATTSKSHRGSKDKDIIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125
            GS       + ++ M      S++L+    +S  + + IN + IR + EL     + + 
Sbjct: 63  FGSNE-----SHIKLMIEKNSSSVRLDMHLKKSKSKGVAINGIPIRKLSELFGTCNVVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERR F+D  +  ++  +   ++ + +++  RN+LL E  F S    +
Sbjct: 118 SPEDLNIIKRSPKERRNFVDMELCQLNKLYVSTLVTYNKVLDQRNKLLKEIGFKSGVEDT 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           +   + Q+ + G  +   R   I  L+ +I          H  LS    ++  ++++   
Sbjct: 178 LDIWDMQLVKYGKDLIAYREAFIKELNEVIYGI-------HSLLSGGEKINVVYEKN--V 228

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            K+++ ++L   R  D   + T +GPHR D       +      GS G+Q+ + + + L+
Sbjct: 229 EKDDFEEELKKSRTSDIRYKTTNVGPHRDDFSFFLNGEMDLKKFGSQGQQRSLALSLKLS 288

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              LI +  G  P+LLLD++ + LD  +++ L   +  I + I  TG +  +  SL +  
Sbjct: 289 EIELIKSRYGEFPVLLLDDVLSELDGKRQSHLLESIKHIQTLITCTGVEDFLNKSL-DIG 347

Query: 363 KFMRISN 369
           K  +++N
Sbjct: 348 KVFKVTN 354


>gi|298484611|ref|ZP_07002716.1| DNA recombination and repair protein RecF [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298160868|gb|EFI01884.1| DNA recombination and repair protein RecF [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 367

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 167/348 (47%), Gaps = 22/348 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185
             R+  G    RR+FLD  VF ++PR    M+ ++RL   ++ RN  L  G  D++  ++
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAA 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++
Sbjct: 179 WDRELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +  L      D     T  GP R+DL +      A+ I   S G+QK+V+  + +A  
Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAVDIL--SRGQQKLVVCALRIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|261417504|ref|YP_003251186.1| recombination protein F [Geobacillus sp. Y412MC61]
 gi|297528380|ref|YP_003669655.1| DNA replication and repair protein RecF [Geobacillus sp. C56-T3]
 gi|319765162|ref|YP_004130663.1| DNA replication and repair protein RecF [Geobacillus sp. Y412MC52]
 gi|261373961|gb|ACX76704.1| DNA replication and repair protein RecF [Geobacillus sp. Y412MC61]
 gi|297251632|gb|ADI25078.1| DNA replication and repair protein RecF [Geobacillus sp. C56-T3]
 gi|317110028|gb|ADU92520.1| DNA replication and repair protein RecF [Geobacillus sp. Y412MC52]
          Length = 372

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 160/366 (43%), Gaps = 21/366 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L ++ +RNY    L F     + +G+N  GKTN++EAI  L+  +  R ++  D+ R   
Sbjct: 6   LTLTNYRNYEYETLNFGEGVNVILGENAQGKTNMMEAIYVLAMAKSHRTSNDKDLIR--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +   +A++EG       S+ LE   ++  +  RC   N +  + + +   HL +    
Sbjct: 63  --WNEEYAKIEGRAEKRSGSLTLELLISKKGKKARC---NHIEQQRLSQYVGHLNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RRRF+D  +  + P +   +  +++L++ RN  L         D + 
Sbjct: 118 PEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMMQARERSDEAV 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIM--EYVQKENFPHIKLSLTGFLDGKFDQSF 240
              +  Q+  L  KI + R + ++ L    M   Y        + +     +D       
Sbjct: 178 LDVLTEQLVLLAAKITLRRRQFLSLLEQWAMPIHYEISRGAEQLCIRYEPSVDVSEKAEL 237

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             + E Y++     R+ + +   TL+GPHR D I  + +       GS G+Q+   + + 
Sbjct: 238 SRIVEAYSETFAAMREREVLRGTTLVGPHRDD-IAFFVNGKNVQTFGSQGQQRTTALAVK 296

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSL 358
           LA   LI +  G  PILLLD++ + LD+ ++  L   +     Q F+T T  D    D +
Sbjct: 297 LAELELIFSELGDYPILLLDDVLSELDDFRQTHLLDAIRK-KVQTFVTTTSIDGIKHDII 355

Query: 359 NETAKF 364
            E A +
Sbjct: 356 QEAAIY 361


>gi|218134380|ref|ZP_03463184.1| hypothetical protein BACPEC_02274 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989765|gb|EEC55776.1| hypothetical protein BACPEC_02274 [Bacteroides pectinophilus ATCC
           43243]
          Length = 358

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 168/368 (45%), Gaps = 18/368 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +N+ ++RNY  L +    +  I  GDN  GKTNILE++   +  +  R +   ++ R
Sbjct: 3   VKSINLKDYRNYELLNIELSDKTNIIYGDNAQGKTNILESMYVGATTKSHRGSKDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125
            G        A ++ +    DI  +++    ++  + + +N + ++   EL   + + + 
Sbjct: 63  FGCDE-----AHIKMIVCRNDIDYRIDMHIKKNKAKGIAVNGIPLKRSVELFGIVNMVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  +D  +   ++ + +++  RN+LL +  F      +
Sbjct: 118 SPEDLNIIKDGPAERRRFMDMELSQLDKVYVFNLMQYNKVLMQRNKLLKDIAFRPDSMDT 177

Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           ++    Q+   G ++   R E +  L+ ++          H KLS  G  + K +    A
Sbjct: 178 LDVWDMQLVRYGEEVIKGRTEFVIKLNDIVSRI-------HSKLS-GGREELKIEYLPSA 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
              E        R  D     T  GPH+ D+I  Y +      +GS G+Q+   + + LA
Sbjct: 230 DSGELGSCTASSRDKDIRFGATAYGPHKDDIIF-YINGNDVRKYGSQGQQRTAALSLKLA 288

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              L+  T    PILLLD++ + LDE+++N L   + DI + +  TG ++ + + ++   
Sbjct: 289 EIELVRQTINDTPILLLDDVLSELDENRQNFLMESMGDIQTVVTCTGLEEFINNRISLDK 348

Query: 363 KFMRISNH 370
            F  ++ H
Sbjct: 349 VFKVVNGH 356


>gi|329770366|ref|ZP_08261748.1| hypothetical protein HMPREF0433_01512 [Gemella sanguinis M325]
 gi|328836489|gb|EGF86149.1| hypothetical protein HMPREF0433_01512 [Gemella sanguinis M325]
          Length = 378

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 175/380 (46%), Gaps = 24/380 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK L +  FRNY SL +       + VGDN  GKTNI+E+I  L+ G+ +R  S ++ 
Sbjct: 1   MKIKTLKLLYFRNYLSLNIEVHPSLNVLVGDNANGKTNIIESIFCLALGKSYRTKSDSEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-VIRVVDELNKHLRIS 123
              G  +   +   +E  + + DI + +  +  +S +   +    +   V ELN    + 
Sbjct: 61  IMFGEEAAAMSCV-LEKNDKMLDIMLGINNK-GKSAKIAGLKKTKLTDFVGELN----VV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GY 177
              P   +I  G    RR F++R  +     + +  + ++ L++ RN  L +        
Sbjct: 115 LFSPEDLQIIKGSPSLRREFINREFYQFSRIYHKYYLLYQHLLKQRNSYLKDMRKNPKDE 174

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV-----QKENFP-HIKLSLTGF 231
           F  ++  +I +Q+ ++ + I   R   I  LS L  + +      KE+     K S+   
Sbjct: 175 FSLAYLETITSQLVKIAMYITKERSLFIKNLSKLAQKNMLNISNHKEDLELKYKSSILDM 234

Query: 232 L--DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           L  +   D+ F   +E   KK+ D    D M   T IGPH+ DL   + +K     + S 
Sbjct: 235 LNINSVEDKDFN--EENIIKKIMDKSYDDIMRGSTRIGPHQDDLEF-FINKLDAKMYASQ 291

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q+ +++ + L+    + + TG  PILLLD++ + LD +++  L   + +       T 
Sbjct: 292 GQQRSIVLSLKLSEIDYLKSKTGSYPILLLDDVLSELDRNRQLKLLDAINENVQTFITTP 351

Query: 350 TDKSVFDSLNETAKFMRISN 369
           +   + + L + AK  +I+N
Sbjct: 352 SISDIKEDLLKKAKVFKINN 371


>gi|332706260|ref|ZP_08426328.1| DNA replication and repair protein RecF [Lyngbya majuscula 3L]
 gi|332354965|gb|EGJ34437.1| DNA replication and repair protein RecF [Lyngbya majuscula 3L]
          Length = 383

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 177/381 (46%), Gaps = 51/381 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++ +FRNY    + FDA  TI +G+N  GK+N+LEA+  LS  +  R     ++  
Sbjct: 3   LKSLHLRQFRNYRDCLVNFDAPKTILLGNNAQGKSNLLEAVELLSTLKSHRSVRDRELVL 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +P      A +E   G  ++ + L T+  R+V   Q         + L + L    ++
Sbjct: 63  ETTP-IAEIRATLERTYGSVELGLTLRTQGRRTVALNQ---------ESLRRQLDFLGIL 112

Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----- 173
            ++   FS L +E        RR +LD ++  ++P +   +  + +++R RN LL     
Sbjct: 113 NAVQ--FSSLDLELVRGAPERRRAWLDSILTQLEPIYAYILQQYNQVLRQRNALLKKIRK 170

Query: 174 --TEGYFDSSWCSSI-------EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
              EG  D+S            +AQ+A  G ++   R  M+  L+ L   +       H 
Sbjct: 171 LQQEGEVDASVSKQYNAELGLWDAQLATAGSRVTRRRERMLKRLAPLAQAW-------HA 223

Query: 225 KLS-LTGFLDGKFDQSFCA-------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
            +S  T  LD  +  +          +K+ + +K+      +    RTL+GPHR D +  
Sbjct: 224 SISGKTEVLDITYAPNVSLSKDDPDLVKQAFLEKIQQYSLPEFHQGRTLVGPHR-DEVQF 282

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
             ++    ++GS G+Q+ +++ + LA  +LI    G AP+LLLD++ A LD +++N L  
Sbjct: 283 TINQTPAKSYGSQGQQRTLVLALKLAELKLIEEVVGEAPLLLLDDVLAELDLNRQNLLLD 342

Query: 337 IVTDIGSQIFMTGTDKSVFDS 357
            + D   Q  +T T    FDS
Sbjct: 343 AIQD-RFQTLITTTHLGAFDS 362


>gi|307331910|ref|ZP_07611006.1| DNA replication and repair protein RecF [Streptomyces
           violaceusniger Tu 4113]
 gi|306882428|gb|EFN13518.1| DNA replication and repair protein RecF [Streptomyces
           violaceusniger Tu 4113]
          Length = 380

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 161/364 (44%), Gaps = 30/364 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y    +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYTRAEVALDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A V+G        I+LE    ++ R        +R  D L   LR   
Sbjct: 61  VRMGAERAVVRAAVVQGDR---QQLIELELNPGKANRARINRSSQVRPRDVLGI-LRSVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARVPRMAGVRSDYDRVLKQRNTLLKTAALARRHGS 176

Query: 175 -EGYFDSSWCS--SIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFP----HI 224
             G  D++  +    +  +A  G ++   R+++I  L  L     E +     P    + 
Sbjct: 177 RSGGGDAALSTLDVWDQHLARAGAELLAQRLDLIAVLQPLADKAYEQLAPGGGPVLLEYR 236

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
             +  G  +    +  C L       L + RK +     TL+GPHR DL++    +    
Sbjct: 237 GSAGEGLTEAGSREELCEL---LMAALTEARKQEIERGVTLVGPHRDDLVLK-LGRLPAK 292

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
            + S GE     + + LA   L+    G  P+L+LD++ A LDE +R  L  +V   G Q
Sbjct: 293 GYASHGESWSYALALRLASYDLLRTEAG-EPVLVLDDVFAELDERRRERLAELVAP-GEQ 350

Query: 345 IFMT 348
           + +T
Sbjct: 351 VLVT 354


>gi|330444455|ref|YP_004377441.1| DNA replication and repair protein recF [Chlamydophila pecorum E58]
 gi|328807565|gb|AEB41738.1| DNA replication and repair protein recF [Chlamydophila pecorum E58]
          Length = 358

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 161/366 (43%), Gaps = 13/366 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L +  FR+Y    + F  +     G N  GKTN+LEA+  LS GR FR    ++ 
Sbjct: 1   MKIVSLTLKNFRSYKDTEVSFAPRVNYISGSNAQGKTNLLEALYILSLGRSFRTQHLSEA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+  FF   A  E       +SI +    D+  + L  ++  ++ + E+   + +  
Sbjct: 61  IAFGASYFFLKIA-FEKFSCSHTLSIYV----DKYGKKLLFDNAPVKTLSEMIGKVPMV- 114

Query: 125 LVPSMDRIF-SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           L  S DR+  SG   +RR FL+ ++   DP +   +  +++ +  RN LL     +++  
Sbjct: 115 LFSSKDRLLISGAPADRRLFLNLLLSQCDPYYTHTLSYYQQALLQRNALLKTK--NTATI 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S    Q+A+LG  I   R    + L+ L+          H+ L     L          L
Sbjct: 173 SVWNEQLAKLGGYITFQRYTCCDKLNVLMQSLWSNPLKEHLLLKFKSSLIKTPAPKEEEL 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +E  K+L      D   + T +GPHR D  +   ++       S G++   L  + LA 
Sbjct: 233 SQELLKQLLHSLPRDLELKSTSVGPHREDFTL-MMNQEPASTFASEGQKHSFLTILRLAE 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           +  + +    +P++ +D++ A LD  + + L ++  + G Q  +T T      +L E +K
Sbjct: 292 SLYLQHHHNLSPLVCIDDLHASLDSQRASQLLQLAPNFG-QTLITSTQP--LYTLPENSK 348

Query: 364 FMRISN 369
            + I N
Sbjct: 349 SLHIKN 354


>gi|309774993|ref|ZP_07670009.1| DNA replication and repair protein RecF [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917247|gb|EFP62971.1| DNA replication and repair protein RecF [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 366

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 165/355 (46%), Gaps = 7/355 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L + +FRNYA + + F     I  G N  GKTN+LE+I +LS  R  R +   D+
Sbjct: 1   MRLETLRLHDFRNYADINVSFSDGIHILTGKNAQGKTNLLESILYLSTTRSHRTSEDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +FF   A +   +   DI +   T +++        + V RV D + +   + +
Sbjct: 61  IKEGEEAFFIK-ASIAKEQKTEDIRV---TVNEKGKNLFIYQNPVNRVSDFIGEFNSVMF 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
               M+ +F      RRRF+D  +  I  ++   +    RL++ RN  L +   D S+  
Sbjct: 117 CPDDMN-LFQASPRVRRRFVDMELSKISKKYVSTLYVATRLLKERNAYLKQERVDRSYLE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            + AQ+ +  V I   R   +  L      + ++ +     +++       F +    LK
Sbjct: 176 VLTAQLVDASVIIIKQRHFFLEELLEKCRAFYRQLSNDDTDITVRYLSCVPFSEKEQELK 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +   KK       D + ++T  G H+ D I +  +K + +++ S G+++ VL+ + +   
Sbjct: 236 DALLKKYQKHLDRDLLLKQTTAGIHKEDFIFEMNNKEL-VSYASQGQKRSVLLALKIGMI 294

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            +I   T   P+LLLD++ + LD  ++  L + +     QIF++ TD    + +N
Sbjct: 295 HMIHEITQEYPVLLLDDVFSELDSYRKAELLKSLPQ-EVQIFISTTDTVDMEDIN 348


>gi|310657320|ref|YP_003935041.1| DNA replication and repair protein recf [Clostridium sticklandii
           DSM 519]
 gi|308824098|emb|CBH20136.1| DNA replication and repair protein recF [Clostridium sticklandii]
          Length = 361

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 171/369 (46%), Gaps = 26/369 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +S FRNY+     F     + +G NG GKTN++EAI  LS GR FR     ++  
Sbjct: 3   INNITLSNFRNYSKAEANFSENLNLIIGKNGQGKTNLIEAIYMLSLGRSFRTNKDKEMMM 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             + + + + + +  M     I IKL  +D +  + ++IN + I  + +L   + I    
Sbjct: 63  FDALNTYIS-SEITAMGRNYKIEIKL-GKDIK--KAVKINSIPIEKLTDLLGIINIVIFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P   ++      ERR F+DR +  + P +   +  +++++  RN LL     D +     
Sbjct: 119 PEDLKLVREGPKERRGFMDREISQLRPNYYSLIHKYQKILVQRNNLLKNTKIDENLLDVY 178

Query: 187 EAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLDGKFDQS 239
           + Q+A +  KI   R E I+ ++ +       I    +K N  ++  ++T   + +FD S
Sbjct: 179 DEQLAIVSQKIMAYRKEFIDNITPIASANHYRISSGKEKLNIKYLP-NITASSEIEFDSS 237

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           +         K    R  D   R T  GPH+ D+ +   D  +  + GS G+++   + +
Sbjct: 238 YI------FNKFKTSRAEDIRRRTTTSGPHKDDIGIYLGDMDLR-SFGSQGQKRSAAISL 290

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-----KSV 354
            L+  +LI       P++LLD+I + LD  ++  L   +++I  Q F+T T+     K V
Sbjct: 291 KLSEIQLIFEEKNEYPVVLLDDIFSELDISRQKMLIDSLSEI--QTFVTTTEAIDFNKEV 348

Query: 355 FDSLNETAK 363
              L E AK
Sbjct: 349 KTYLIENAK 357


>gi|289551837|ref|YP_003472741.1| DNA recombination and repair protein RecF [Staphylococcus
           lugdunensis HKU09-01]
 gi|289181368|gb|ADC88613.1| DNA recombination and repair protein RecF [Staphylococcus
           lugdunensis HKU09-01]
          Length = 371

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 160/360 (44%), Gaps = 28/360 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY ++ L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FKAEYAKIEGELNYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +  +    D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQYGHKTDV 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q A+  + + + R   I+ L +L            E +     P IKLS   
Sbjct: 176 TMLEVLNQQFAQYALNVTLRREHFIHDLEALAQPIHAGITNDKEALSLNYLPSIKLS--- 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D   D+S   L  E    L D    +      L GPHR DL  +  +      +GS G
Sbjct: 233 --DTSQDESI--LLSEVITFLNDNLDREIDRGVCLFGPHRDDLGFN-VNSMDAQTYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346


>gi|291297542|ref|YP_003508820.1| DNA replication and repair protein RecF [Stackebrandtia nassauensis
           DSM 44728]
 gi|290566762|gb|ADD39727.1| DNA replication and repair protein RecF [Stackebrandtia nassauensis
           DSM 44728]
          Length = 378

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 160/359 (44%), Gaps = 23/359 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR+Y  + +      ++FVG NG GKTN++E++ +L+ G   R  S A +
Sbjct: 1   MHVRRLELTDFRSYGHVDVELPEGPSVFVGPNGHGKTNLIESLGYLATGSSHRVTSDAPL 60

Query: 65  TRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G  S  +  A V EG E LA+++I    + +R+    ++N   +    +L   L+  
Sbjct: 61  VRAGCESATARAAIVHEGRELLAELTIT-PGKANRA----RLNRSPLPRSRDLIGALKAV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178
              P    +  G   +RRR LD ++ A  PR      D++R+++ RN LL   Y      
Sbjct: 116 VFAPEDLNLIRGEPEQRRRLLDELLIARHPRFAGVRADYDRVVKQRNALLRTAYLARKTG 175

Query: 179 -----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKLSLT 229
                D     + +A +A+ G  +   R+ +I   +  +++  +        P +     
Sbjct: 176 GRGNTDLHTLDTWDAHLAQHGADLLAGRLALIEDYTPYVVKAYEAVSAGRGRPRLSYHSA 235

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
              +         L    +  L   R  +     TL+GPHR DL +   D      + S 
Sbjct: 236 LGENEPLSPDRDLLTARLSAALATARSREVERGTTLVGPHRDDLKLVLGDLPAK-GYASH 294

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           GE     + + L  A L+ +  G AP+L+LD++ A LD  +R  L  +V     Q+ +T
Sbjct: 295 GESWSYALALRLGAAELLRD-NGTAPVLILDDVYAELDSQRRERLAELVAR-APQVLVT 351


>gi|167461554|ref|ZP_02326643.1| recombination protein F [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 377

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 162/370 (43%), Gaps = 28/370 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  +RNY  + LV D    IFVG N  GKTN+LE+I  L+  +  R     ++ +   
Sbjct: 6   LTLHHYRNYQHVELVTDRNVNIFVGPNAQGKTNLLESIYVLALTKSHRTHHDKELIQWEG 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            S       VE   G   + + + ++  ++    +IN +  + + +    L +    P  
Sbjct: 66  ESALLQ-GDVEKKYGSYSLDLAISSKGKKA----KINGLEQKKLSQFIGALNVVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI--- 186
             I  G    RRRFLD  +  + P +   +  +++++  RN +L + +   S   +    
Sbjct: 121 LEIIKGNPGIRRRFLDMEIGQVYPGYLYDLSQYQKVLAQRNNMLKKAFPAPSAEHAAMLD 180

Query: 187 --EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFC-- 241
               Q+A+ GVKI   R   I  L +   +        H  ++  G  L  ++  SF   
Sbjct: 181 IWNEQLAQFGVKIMKKRQNFIKKLQNWAEQI-------HDGITNGGEELTIRYQPSFAVQ 233

Query: 242 ------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
                  L E++  KL   +  +     +L GPHR DL+    DK +   +GS G+Q+  
Sbjct: 234 DFEDETVLMEQFMIKLSQIKDQEIRRGVSLAGPHRDDLLFYINDKEVQ-TYGSQGQQRTT 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSV 354
            + + LA   LI +  G  PILLLD++ + LDE ++  L +     + + I  TG +   
Sbjct: 293 ALSLKLAEIELIHSEVGEYPILLLDDVLSELDEYRQTQLIQTFQKKVQTFITTTGLESVH 352

Query: 355 FDSLNETAKF 364
            D L + + F
Sbjct: 353 LDQLEDASVF 362


>gi|238018220|ref|ZP_04598646.1| hypothetical protein VEIDISOL_00044 [Veillonella dispar ATCC 17748]
 gi|237864691|gb|EEP65981.1| hypothetical protein VEIDISOL_00044 [Veillonella dispar ATCC 17748]
          Length = 366

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 162/368 (44%), Gaps = 34/368 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  + + F+ +  +  G NG GKTNILE+I   + G+  R    +D+
Sbjct: 1   MRIDSLQLFQFRNYKDVTIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +        + E  +    ++IKL  +  + +R   +ND  I    EL   L    
Sbjct: 61  LMFNAEE-AGIVVKFEKKDTPQKVNIKLFRQGPKDIR---LNDTKIS-QKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD--- 179
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN +L E  G  +   
Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAILKEYRGKQNIPL 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KF 236
             W   + A MA   VK  +  ++ IN L  L+               LTG L+     +
Sbjct: 176 EEWDLQL-ADMASFIVKKRLESLKKINLLIDLMNR------------KLTGGLENLTIGY 222

Query: 237 DQSFC------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           +Q +         KE + +++      D     T +GPHR DL   + D       GS G
Sbjct: 223 EQPYMDNGSLEYTKEGFYERIKAALPQDRHRMTTSVGPHRDDLRF-FSDAMDLKKFGSQG 281

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ + L+    I +  G  P+LLLD++ + LDE +R  L + +     Q F+T T
Sbjct: 282 QQRTAVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDESRRANLLQFIHK-RIQTFITTT 340

Query: 351 DKSVFDSL 358
           D   F  L
Sbjct: 341 DIHDFKDL 348


>gi|237806779|ref|YP_002891219.1| DNA replication and repair protein RecF [Tolumonas auensis DSM
           9187]
 gi|237499040|gb|ACQ91633.1| DNA replication and repair protein RecF [Tolumonas auensis DSM
           9187]
          Length = 357

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 156/349 (44%), Gaps = 14/349 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I  FRN     +       + +G NG GK+++LEAI +LS GR FR      V   G 
Sbjct: 5   LQIQHFRNLGQTEIYPSGGMNLLLGLNGSGKSSVLEAIHYLSLGRSFRTHLTNRVIMQGE 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            + F+ FA++E  E    ISI L+ +D +    L+I       + +L   L +  + P  
Sbjct: 65  KA-FTLFAQLELDE--QSISIGLQ-KDRQGDTQLKIGGKSADKLAQLASLLPLQLIHPEG 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G   +RR F+D  VF ++           RL++ RN LL +    +   +  + Q
Sbjct: 121 YNLLTGGPQQRRAFIDWGVFHVEQAFFPLWGKVRRLLKQRNALLRQSSHYAP-LAYWDQQ 179

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +AE    +++ R +   AL  L+ +  Q E  P      T +   + +Q    L +E   
Sbjct: 180 LAEFSEALSVFRQQYCQALLPLVQQICQ-ELLPEYTFQATFYAGWQQEQGLHLLLQE--- 235

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
               G + D     T IGPHR+DL +   +        S G+ K+++  + LA    +  
Sbjct: 236 ----GFERDRQLGHTAIGPHRADLRLR-AEGVPVQDLLSRGQLKLLVCALRLAQGLYLRQ 290

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
            +    + L+D+ ++ LD +KR  L + +    SQ+F+T  D+     +
Sbjct: 291 NSEKTCLFLIDDFASELDAEKRYVLAKRLQQCESQVFITAIDQQPLQEM 339


>gi|332991511|gb|AEF01566.1| Recombinational DNA repair ATPase [Alteromonas sp. SN2]
          Length = 362

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 158/355 (44%), Gaps = 17/355 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + ++ FRN +S  L      TI  G NG GK++++E+I +L  GR FR   +  V
Sbjct: 1   MKLDKVQLTNFRNISSANLSPSPALTIIRGVNGSGKSSLVESIFYLGFGRSFRTNKHTSV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G    FS FA  +  E    +++  + R + +  C  IN      + +L   + +  
Sbjct: 61  IKTGEEE-FSVFASCKNEES-ETLNLGFQRRRNDTFTC-SINGEHSNKLSDLVSLVPVQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P    +  G   ERRRF D  +F ++   +   + F + ++ RN LL +     +   
Sbjct: 118 FTPQSTDLILGSPSERRRFCDWGLFHVEHDFQMLSVQFSKFLKHRNALLKQQSDLSAPQN 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E    E    ++I R + I+ L+ +  +Y         K+SL  +   + D S    
Sbjct: 178 QYWEQCFLERAEALSIKREDYISKLTPIFEKYATT-FLAEYKVSLNYYKGWEKDASL--- 233

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
               A+ L   R+ D     T  GPH++D  L ++  +    +   S G+ ++ +  + +
Sbjct: 234 ----AESLVKKREYDGKIGHTTSGPHKADIRLKINGVNAQELL---SRGQLRMAVAALQM 286

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           A   L +  T    I LLD++ A LD DKR      + D+ +Q+F+T  + S  +
Sbjct: 287 AQTELFNTLTNRKSIFLLDDVGAELDADKRELFIDGLLDMDTQVFVTAIESSQLE 341


>gi|282848763|ref|ZP_06258158.1| putative recombination protein F [Veillonella parvula ATCC 17745]
 gi|282581549|gb|EFB86937.1| putative recombination protein F [Veillonella parvula ATCC 17745]
          Length = 366

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 163/368 (44%), Gaps = 34/368 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  +++ F+ +  +  G NG GKTNILE+I   + G+  R    +D+
Sbjct: 1   MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +        + E  +    ++IKL  +  + +R   +N+  I    EL   L    
Sbjct: 61  LMFNAEE-AGIVVKFEKKDTPQKVNIKLFRQGPKDIR---LNETKIS-QKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN +L E    ++   
Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175

Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KF 236
             W   + A MA   VK  +  ++ IN L  L+               LTG L+     +
Sbjct: 176 EEWDLQL-ADMASFIVKKRLESLKKINLLIDLMNR------------KLTGGLENLTIGY 222

Query: 237 DQSFCALKE-EYAKKLFDGR-----KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           +Q +      EY K+ F  R       D     T +GPHR DL   + D       GS G
Sbjct: 223 EQPYMDNGSLEYTKEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQG 281

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ + L+    I +  G  P+LLLD++ + LDE +R  L + +     Q F+T T
Sbjct: 282 QQRTAVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDESRRTNLLQFIHK-RIQTFITTT 340

Query: 351 DKSVFDSL 358
           D   F  L
Sbjct: 341 DIHDFKDL 348


>gi|315174179|gb|EFU18196.1| recombination protein F [Enterococcus faecalis TX1346]
          Length = 375

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 166/355 (46%), Gaps = 18/355 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A++ G+      ++ LE       R   +N +  + +      L +  
Sbjct: 61  --IG---WEQAAAKISGVVEKKTGTVPLEILISNKGRKTMVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +       D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235
            +   +  Q+AE G K+  AR+  +  L        QK    H + +LT           
Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQK--ISHGRETLTIDYASSIPIDN 233

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            D S  AL+ +  ++L + RK +     T +GPHR DL+     + +   +GS G+Q+  
Sbjct: 234 TDLSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTT 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            + I LA   L+ + TG  P+LLLD++ + LD +++  L   + +   Q F+T T
Sbjct: 293 ALSIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 346


>gi|302380115|ref|ZP_07268588.1| DNA replication and repair protein RecF [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312057|gb|EFK94065.1| DNA replication and repair protein RecF [Finegoldia magna
           ACS-171-V-Col3]
          Length = 355

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 170/362 (46%), Gaps = 35/362 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  +RN+  + L F     + VG N  GKTNILEAI+    G+ F+  + + + +
Sbjct: 3   VQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHLIK 62

Query: 67  IGSPSFFSTFARV------EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            G        AR+      +G E   DI+IK       + + L +N+  +  + E N++ 
Sbjct: 63  FGEDE-----ARIVMDVYDDGFEDKIDITIK------SNEKILNVNEAFVNTIKEYNEYF 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                 P   +I       RR+FLD  +  +D  +R  +  + +++  RN+L+    ++S
Sbjct: 112 ECIVFKPDDLKIIKESKSLRRKFLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNS 171

Query: 181 SWCSSIEA---QMAELGVKINIAR---VEMINALSSLIMEYVQKEN---FPHIKLSLTGF 231
            +   ++A   Q+++ G  I   R   VE ++ ++  + + +  EN   +   K S+  +
Sbjct: 172 YFNEQLKALNIQLSDFGSYIMHKRKSYVERLHLIAKNVCKNLSDENDDLYMENKFSIR-Y 230

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           ++   DQ     K  Y K L D  + D  +++T +G HR DL V   DK       S  +
Sbjct: 231 VEDMTDQ-----KNTYYKSLRDILEKDLENKQTNLGIHRDDLDVLINDKQAKF-FASQAQ 284

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            +  ++ + LA   L        PI+LLD++ + LD+ + N + R + D   Q F+T ++
Sbjct: 285 VRTAILSMKLAQLDLSRFYNDRMPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSE 342

Query: 352 KS 353
           ++
Sbjct: 343 RA 344


>gi|291521104|emb|CBK79397.1| DNA replication and repair protein RecF [Coprococcus catus GD/7]
          Length = 365

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 154/358 (43%), Gaps = 20/358 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  +RNY  L +       IF GDN  GKTN+LEA+   +  +  R +   ++ R
Sbjct: 3   VESLALENYRNYVHLSVNLSPGINIFFGDNAQGKTNVLEALYMCATTKSHRGSRDREIIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +        E +    D+ +K         + + I+ + IR   EL   + +   
Sbjct: 63  FGEEEAHIRMLLSKEHVRHKIDVHLK-----KNKSKGIAIDGIPIRKSGELFGLVHMICF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    +      ERRRFLD  +  +D  +   + ++ +++  RN LL +  FDS+   +
Sbjct: 118 SPEDLAMIKNGPGERRRFLDLELCQLDKVYLHNISNYNKIVNQRNNLLKQIGFDSALKDT 177

Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFC 241
           ++    QM   G K+   R   I  L+         E    I   LTG  +  +      
Sbjct: 178 LDIWDMQMVNYGRKVIETRRLFIAQLN---------EWLEQIHGRLTGNREKLRLVYQPS 228

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
              E++ + L   R  D   + +  GPHR D +    +  I    GS G+Q+   + + L
Sbjct: 229 TEPEDFERVLLSKRDQDIRMKMSGTGPHRDDFLFMVGEVDIR-KFGSQGQQRTAALSLKL 287

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
           A   L+  + G  P+LLLD++ + LD  ++N L   + DI + I  TG D+ V    N
Sbjct: 288 AEIELVRQSIGDEPVLLLDDVLSELDSSRQNYLLDCIKDIQTVITCTGLDEFVNHRFN 345


>gi|257065524|ref|YP_003151780.1| DNA replication and repair protein RecF [Anaerococcus prevotii DSM
           20548]
 gi|256797404|gb|ACV28059.1| DNA replication and repair protein RecF [Anaerococcus prevotii DSM
           20548]
          Length = 359

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 158/352 (44%), Gaps = 21/352 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK L ++ FRNY    + F+    IF+GDN  GKTN+LE++ +L+    F++    D+
Sbjct: 1   MRIKDLKLNNFRNYFYENVEFNKDSNIFIGDNAQGKTNLLESVYYLANASSFKKIRDKDI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  S       +       ++ I+++  D    + + +N V      +L    +I  
Sbjct: 61  VRFGQ-SQMKLAGTIRKGRSFKEVFIEVKDND----KSIFVNGVKYDRRKDLRSLFKIVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDSS 181
             P    I       RR  +D ++  ID  ++    D+++++  RN+LL +    YF   
Sbjct: 116 FTPEDLGIIKDGPNRRRDLIDEIIEEIDLSYKANKRDYDKILYQRNKLLKKQKAPYF-KE 174

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQS 239
              + +  + +L  KI   R + I  +     E+     EN   +KLS    ++ K   S
Sbjct: 175 QLEAFDKSLTKLSYKIYKTRDKFIKIVDKFASEFHSSLTENKEELKLSYKADIEAK---S 231

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                 EY +     R +D     +  G HR ++ +    K  T +  S G+Q+  ++ I
Sbjct: 232 LT----EYEEVFRSARDLDFKYLTSQRGIHRDEIEISINGKN-TKSFASQGQQRSAILNI 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            LA  RLI   TG   ++L D++ + LDE  + ++F +    G Q  +T T+
Sbjct: 287 RLAEVRLIKEVTGDEAVILFDDVFSELDE--KRSMFLLENLKGFQTIITATN 336


>gi|269797073|ref|YP_003310973.1| DNA replication and repair protein RecF [Veillonella parvula DSM
           2008]
 gi|269093702|gb|ACZ23693.1| DNA replication and repair protein RecF [Veillonella parvula DSM
           2008]
          Length = 366

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 163/368 (44%), Gaps = 34/368 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  +++ F+ +  +  G NG GKTNILE+I   + G+  R    +D+
Sbjct: 1   MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +        + E  +    ++IKL  +  + +R   +ND  I    EL   L    
Sbjct: 61  LMFNAEE-AGIVVKFEKKDTPQKVNIKLFRQGAKDIR---LNDTKIS-QKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN +L E    ++   
Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175

Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KF 236
             W   + A MA   VK  +  ++ IN L  L+               LTG L+     +
Sbjct: 176 EEWDLQL-ADMASFIVKKRLESLKKINLLIDLMNR------------KLTGGLENLTIGY 222

Query: 237 DQSFC------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           +Q +         KE + +++      D     T +GPHR DL   + D       GS G
Sbjct: 223 EQPYMDNGSLEYTKEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQG 281

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+  ++ + L+    I +  G  P+LLLD++ + LDE +R  L + +     Q F+T T
Sbjct: 282 QQRTAVLSLKLSELEFIKSEVGEYPVLLLDDVLSELDESRRVNLLQFIHK-RIQTFITTT 340

Query: 351 DKSVFDSL 358
           D   F  L
Sbjct: 341 DIHDFKDL 348


>gi|56707876|ref|YP_169772.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670347|ref|YP_666904.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134301718|ref|YP_001121686.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|224456955|ref|ZP_03665428.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370369|ref|ZP_04986374.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254874691|ref|ZP_05247401.1| recF, DNA replication and repair protein [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|81597652|sp|Q5NGS0|RECF_FRATT RecName: Full=DNA replication and repair protein recF
 gi|123359518|sp|Q14I72|RECF_FRAT1 RecName: Full=DNA replication and repair protein recF
 gi|259563660|sp|A4IXB4|RECF_FRATW RecName: Full=DNA replication and repair protein recF
 gi|56604368|emb|CAG45395.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320680|emb|CAL08778.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134049495|gb|ABO46566.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|151568612|gb|EDN34266.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254840690|gb|EET19126.1| recF, DNA replication and repair protein [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159059|gb|ADA78450.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. tularensis NE061598]
 gi|328676814|gb|AEB27684.1| DNA recombination and repair protein RecF [Francisella cf. novicida
           Fx1]
          Length = 349

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 161/356 (45%), Gaps = 15/356 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRN  +    F       VG NG GKT+ILE+I FLS  R FR +    +    +
Sbjct: 6   LRLQNFRNIPAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIINHNA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F   + +    +   +I+I L +R   S    ++N  + +   E+ ++L I  + P  
Sbjct: 66  DEFI-IYTKAYNPD---EITISL-SRKKNSNNISKLNLEIQKNHTEITRNLPIQLINPES 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             I +  + +R + LD   F +D    +     + L++ RN  L + Y   S+  SI+ +
Sbjct: 121 FNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNY-PYSYILSIDKK 179

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           + E    ++  R      L   I E +   N P+++L +  F      +S   + EE   
Sbjct: 180 LCEFAEILDYKRQAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKSLAQVLEE--- 235

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
                   D+  + T  GPH++D+++    K I     S G+QK+++  + LA   + ++
Sbjct: 236 ----SFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQGEIHNS 290

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
                 I L+D+I++ LD      LF  +  + SQ+F+T T+K+  +   +T  ++
Sbjct: 291 ENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSYI 346


>gi|167766861|ref|ZP_02438914.1| hypothetical protein CLOSS21_01378 [Clostridium sp. SS2/1]
 gi|167711409|gb|EDS21988.1| hypothetical protein CLOSS21_01378 [Clostridium sp. SS2/1]
 gi|291558401|emb|CBL37201.1| DNA replication and repair protein RecF [butyrate-producing
           bacterium SSC/2]
          Length = 361

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 163/356 (45%), Gaps = 30/356 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +  +RNY  L + F +   +  GDN  GKTNILE+I   +  +  R     ++ +
Sbjct: 3   IKSLELKNYRNYDELSMNFASGTNLLYGDNAQGKTNILESIYLSATTKSHRGNKDRELIK 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              + +        +G++   D+ +K         + + I+ + IR   +L   + +   
Sbjct: 63  FEENEAHIRIHFEKQGIDHQLDMHLK-----KNKAKGVAIDRIPIRRSSDLLGQIPVILF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   +I      ERR+FLD  +  ++  +  ++ ++ +++  RN LL +  F ++   +
Sbjct: 118 SPEDLKIVKSGPSERRKFLDIELSQMERLYLYQLTNYNKILVQRNNLLKQIRFQNNLIET 177

Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-----FLDGKFD 237
           +EA   Q+ + G ++   R + I  L     E  QK     I   LTG      L+   D
Sbjct: 178 LEAWDIQLVKYGSEVIKYREKFIKHLG----EVCQK-----IHNKLTGGKEKILLEYDRD 228

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVL 296
             + +   E AKK    R+ D     T +GPHR D  + +    I I  +GS G+Q+   
Sbjct: 229 VGYDSYLTELAKK----RQKDLKYSTTTVGPHRDD--ISFIVNGIDIRKYGSQGQQRTAA 282

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + + LA  +L+      +PILLLD++ + LD +++  L   + D  + I  TG D+
Sbjct: 283 LSLKLAQIQLMREVMKESPILLLDDVLSELDSNRKTYLLESIKDTQTIITCTGLDE 338


>gi|28376978|ref|NP_783870.1| recombination protein F [Lactobacillus plantarum WCFS1]
 gi|254555173|ref|YP_003061590.1| recombination protein F [Lactobacillus plantarum JDM1]
 gi|300769109|ref|ZP_07078998.1| recombination protein F [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308179195|ref|YP_003923323.1| recombination protein F [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|38258550|sp|Q890K5|RECF_LACPL RecName: Full=DNA replication and repair protein recF
 gi|28269809|emb|CAD62706.1| DNA repair and genetic recombination protein RecF [Lactobacillus
           plantarum WCFS1]
 gi|254044100|gb|ACT60893.1| recombination protein F [Lactobacillus plantarum JDM1]
 gi|300493349|gb|EFK28528.1| recombination protein F [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308044686|gb|ADN97229.1| recombination protein F [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 374

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 162/353 (45%), Gaps = 29/353 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRNYA L + F     + +G+N  GKTN+LEAI  L+  R  R A+  ++ R   
Sbjct: 6   LVLHDFRNYADLTINFSQGVNVLLGENAQGKTNLLEAIYVLALTRSHRTANDKELIR--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             + +T A ++G    +  ++ LE    R  +  ++N +    + +   +L +    P  
Sbjct: 63  --WQTTTATLQGRLHKSTGAVPLELELGRRGKRAKVNHLEQAKLSQYVGNLNVIVFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             I  G    RRRF+D     + P++   +  +  +++ RN+ L     +   D  +   
Sbjct: 121 LSIVKGAPAVRRRFMDMEFGQMSPKYLYNLSQYRTILKQRNQYLRQLNRQQAKDKVYLGV 180

Query: 186 IEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTG---FLDGK 235
           +  Q+A  G +I   R++++        A+ S I +  ++  F ++    T     +D  
Sbjct: 181 LSDQLAAFGAEIIHKRLQLLQQLEKWAQAVHSEITQEQEQLTFHYVTQVPTADQTSVDHI 240

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           +       +++ AK++F G         TL+GPHR DL      K +    GS G+Q+  
Sbjct: 241 YQTLQALYQQQQAKEIFQG--------TTLLGPHRDDLQFGVNGKNVQ-TFGSQGQQRTT 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            + + LA   L+   TG  P+LLLD++ + LD  ++  L   + D   Q F+T
Sbjct: 292 ALSVKLAEIDLMKAETGEYPVLLLDDVLSELDAARQTHLLTAIQD-KVQTFLT 343


>gi|229035150|ref|ZP_04189096.1| DNA replication and repair protein recF [Bacillus cereus AH1271]
 gi|228728216|gb|EEL79246.1| DNA replication and repair protein recF [Bacillus cereus AH1271]
          Length = 375

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|154496130|ref|ZP_02034826.1| hypothetical protein BACCAP_00414 [Bacteroides capillosus ATCC
           29799]
 gi|150274685|gb|EDN01749.1| hypothetical protein BACCAP_00414 [Bacteroides capillosus ATCC
           29799]
          Length = 367

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 166/383 (43%), Gaps = 42/383 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY-ADVT 65
           +K + +  FRNY  L   F     +  G+N  GKTN+LEAI +LS     RRA Y  ++ 
Sbjct: 3   VKSITLDFFRNYPHLETAFSPDVNVICGENAQGKTNLLEAIGYLSTASS-RRARYDRELI 61

Query: 66  RIGSPSFF---STFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLR 121
           + G    F     F+R        +    LE R  RSV R L  N V ++   EL   L 
Sbjct: 62  QFGVDHAFVKAEVFSR--------ERDFTLEARLGRSVRRQLLSNGVKLKTAGELAGVLN 113

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
             +  P    +    + ERRRFLD  +  + PR+   + ++ RL   + R+L +     S
Sbjct: 114 TVFFCPEDLMLIREGAAERRRFLDECICQLRPRYAAALAEYRRLHEQKTRILRDWEEKPS 173

Query: 182 WCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGK 235
              +++    +MA+ G  +   R   +  L         +E  P I    +G    L  K
Sbjct: 174 LLDTLDDFNLRMAQTGAILIHYRAHFVRRL---------RETAPPIHREFSGGREELGLK 224

Query: 236 FDQ-SFCALKEEYAKKLFDG--------RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           ++  S     E   K +           R+ +  +R+ L GPH+ DL V+    A     
Sbjct: 225 YETVSTVTDPEGGVKDILSALIAHQESHRRAELEARQCLSGPHKDDLTVELGGVAAR-QF 283

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S G+ +   + + LA   +    TG  P+LLLD++ + LD+ +++ +   +   G Q+F
Sbjct: 284 ASQGQTRTAALSLKLAAREIFYGDTGEWPVLLLDDVLSELDQRRQSFVLNRIK--GGQVF 341

Query: 347 MTGTDKSVFDSLNETAKFMRISN 369
           +T  +    + L E  K +RI N
Sbjct: 342 ITCCEDEKLEHL-EGGKVLRIHN 363


>gi|300742654|ref|ZP_07072675.1| RecF protein [Rothia dentocariosa M567]
 gi|300381839|gb|EFJ78401.1| RecF protein [Rothia dentocariosa M567]
          Length = 403

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 168/402 (41%), Gaps = 54/402 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++ ++R Y  L L   A  T+F+G NGVGKTNI+EAI + +     R +    + R
Sbjct: 3   LDHLSLLDYRTYPLLNLPLSAGVTVFLGPNGVGKTNIIEAIDYTANLSSHRVSHDGPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           +G+      + RV  + G      + E     S R  +IN        E     R     
Sbjct: 63  VGAS---RAYIRVRTVRGSQQTVTEFEIAPGASNRV-RINRAAPVRAREALGITRTVLFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P   ++  G    RRRF+D +  ++ P       ++ER++R RN LL       S  +  
Sbjct: 119 PEDLQLVKGEPAGRRRFIDDLAVSLRPVVAGYRQEYERILRQRNSLLKTLQRRGSLAADD 178

Query: 187 E----------AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
           E           Q+A+LG ++  AR  ++  L             PH++ +  G  DG  
Sbjct: 179 ENAMHTLDVWSEQLAQLGAQLLAARFRVLWLL------------LPHLRRAYAGLTDGSK 226

Query: 237 DQSFCA-----------------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
           D SF                         +K+  A++L + R  +     TL+GPHR D+
Sbjct: 227 DISFTYDSTVFPEITERGLEHVSRMSIDDIKDAMAQRLRERRAAELERGVTLVGPHRDDI 286

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAH---ARLISNTTGFAPILLLDEISAHLDEDK 330
            +     A+     S GE   V + + LA     R   ++ G +PIL+LD++ A LD ++
Sbjct: 287 TLLLGGLAVK-QFASHGESWSVALSLRLASWFVHRADDDSPGSSPILILDDVFAELDSER 345

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
           R+ L  +V     Q+ +T    S       T + +R+S   A
Sbjct: 346 RHRLGALVAQ-AEQVLLTSAVLSDIPEELGTYRLVRVSAAHA 386


>gi|146305045|ref|YP_001185510.1| recombination protein F [Pseudomonas mendocina ymp]
 gi|166220724|sp|A4XN62|RECF_PSEMY RecName: Full=DNA replication and repair protein recF
 gi|145573246|gb|ABP82778.1| DNA replication and repair protein RecF [Pseudomonas mendocina ymp]
          Length = 367

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 158/350 (45%), Gaps = 24/350 (6%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           ++  RN   + L    +  I  G NG GKT++LEAI  L   R FR      V     P+
Sbjct: 8   VTAVRNLHPVTLSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSTRLQPVIHYEQPA 67

Query: 72  FFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130
             + F +V+  EG  +++ I   +RD +    ++I+    R   +L   L +  + P   
Sbjct: 68  C-TVFGQVQLAEGGSSNLGI---SRDRQGELQIRIDGQNARSAAQLADLLPLQLINPDSF 123

Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190
           R+  G    RR+FLD  VF ++ R        ++ +R RN  L  G  D +  ++ + ++
Sbjct: 124 RLLEGAPKIRRQFLDWGVFHVEHRFLGAWQRLQKALRQRNSWLRHGTLDGASQAAWDREL 183

Query: 191 AELGVKINIARVEMINALSSL----IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
                +I+  R   I AL  +    + E +Q E      L+L+ +     D+    L E 
Sbjct: 184 CSASQEIDTYRRAYIQALKPVFERTLAELLQLEG-----LTLSYYRGWDKDRE---LSEV 235

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHAR 305
            A  L   +++      T  GP R+DL +      A  I   S G+QK+V+  + +A   
Sbjct: 236 LASSLLRDQQLG----HTQAGPQRADLRLRLAGHNAAEIL--SRGQQKLVVCALRIAQGH 289

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           L++       I L+D++ + LDE  R AL R++ D+  Q+F+T  D  + 
Sbjct: 290 LVNEAKRGQCIYLVDDLPSELDEQHRQALCRLLEDLHCQVFITCVDHELL 339


>gi|56459115|ref|YP_154396.1| recombinational DNA repair ATPase [Idiomarina loihiensis L2TR]
 gi|81678377|sp|Q5QY37|RECF_IDILO RecName: Full=DNA replication and repair protein recF
 gi|56178125|gb|AAV80847.1| Recombinational DNA repair ATPase [Idiomarina loihiensis L2TR]
          Length = 354

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 177/373 (47%), Gaps = 36/373 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ LN+S FRN++ + L    +  I  GDNG GKT++LEAI  L  GR FR   +  + +
Sbjct: 3   IETLNLSHFRNFSEVALSPSPKINIITGDNGSGKTSLLEAIYLLGFGRSFRPGGFRQLIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+ S F+ F R +       I ++  T  ++S+R   +N   ++ + ++ + + +  L 
Sbjct: 63  EGN-SGFTVFCRSQDYA----IGVRRSTDGEQSLR---LNGANVQRMSDVARLVPVQLLT 114

Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSS 181
           P S+D +  G   +RR+F+D  VF ++       + + +L++ RN LL +       D  
Sbjct: 115 PESVDILLEGPG-QRRQFIDWGVFHVEHSFYSDWVAYTQLLKQRNSLLKQRSLPVREDRY 173

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS-- 239
           W    + Q+A  G +I+ +R + +  L+  I E + K     + + +   L   +D S  
Sbjct: 174 W----KEQLAYYGERISKSREKYLEELNDYIQE-LAKSFLSDVTMEVR--LKSGWDTSQS 226

Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLV 297
            F AL+    K        D     T +G H++D+ V      + + H  S G+ K  + 
Sbjct: 227 LFDALESHTEK--------DKKYGFTSVGAHKADIKV--IADGVEVKHRLSRGQLKTAIT 276

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFD 356
            + LA  +          I L+D++++ LD   +  L R + ++ +Q+F+T  T K + D
Sbjct: 277 ALKLAQGKHYQKIKRQPCIYLVDDLTSELDSKNQALLCRELENLDAQVFITAITGKQLSD 336

Query: 357 SLNETAKFMRISN 369
              ++ +   + +
Sbjct: 337 KFQKSPRMFHVEH 349


>gi|227511155|ref|ZP_03941204.1| recombination protein F [Lactobacillus buchneri ATCC 11577]
 gi|227085637|gb|EEI20949.1| recombination protein F [Lactobacillus buchneri ATCC 11577]
          Length = 373

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 166/374 (44%), Gaps = 18/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++K + +  FRNY    L F     +F+G+N  GKTN+LEAI  L+  R  R ++  ++
Sbjct: 1   MRLKDIALHNFRNYIDQTLQFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S +       ++   G   I + L T+  R+    +IN +    +      L +  
Sbjct: 61  INWQSQTA-QLKGTIQKQLGKVPIELDLGTKGKRA----KINHLEQAKLSSYVGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RR+F+D     +  R+      +++++R RNR L +       D 
Sbjct: 116 FAPEDLSIVKGAPQVRRKFMDMEFGQMSNRYLYNSTQYKKILRQRNRYLRDLQHKIQSDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQS 239
            +   +  Q++  G +I   R++++  L     + V  E     K +LT        D+ 
Sbjct: 176 VYLDVLSDQLSAYGAEIIYQRIQLLKKLEGF-AKNVHTE-ISQGKEALTFLYQTAVPDEQ 233

Query: 240 FCALKEEYA---KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
             +++  Y    K+  D ++ +     TL+GPHR DL      K +  + GS G+Q+   
Sbjct: 234 LTSIENIYQNLLKQFADIKEKEIQRGTTLLGPHRDDLKFAINKKEVQ-SFGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VF 355
           + + LA   L+   T   PILLLD++ + LD+ ++  L   + D   Q F+T T  S V 
Sbjct: 293 LSVKLAEIDLMKEQTNEYPILLLDDVLSELDDYRQTHLLTAIQD-KVQTFLTTTSLSGVQ 351

Query: 356 DSLNETAKFMRISN 369
             L    K  RI+N
Sbjct: 352 QELLSNPKIFRIAN 365


>gi|300857420|ref|YP_003782403.1| DNA replication and repair protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300684874|gb|ADK27796.1| DNA replication and repair protein [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 421

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 170/385 (44%), Gaps = 38/385 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L++ +FR++A   +  +   T+FVG NG GKTNI+EAI +++     R +  + +
Sbjct: 18  VYIRELSLRDFRSWADCHVNLEPGVTVFVGRNGFGKTNIVEAIGYIAHLGSHRVSQDSPL 77

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              G  S   S  A  +G E  A + IK      +     QIN   ++    L   +R  
Sbjct: 78  VHQGKDSARVSVTAVNQGRELTAHMLIK-----SKGTNQAQINRTRLKSPRGLLGVVRTV 132

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175
              P    +  G   ERRR+LD +V    PR      D++++++ RN LL          
Sbjct: 133 LFSPEDLSLVRGEPGERRRYLDHIVATRKPRLAGVKADYDKVLKQRNSLLKTASASLRRG 192

Query: 176 -GYFDSSWCS--SIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP------- 222
            G  D + C+    +AQ+A LG ++  AR  ++  L+ L+      +  E+ P       
Sbjct: 193 YGADDGTLCTLDVWDAQLARLGSELIHARHSLVEELTPLVHSAYARIAPESRPARINYES 252

Query: 223 --HIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV---D 276
              + +++T   +          L+     +L   RK +     TL+GPHR DL V   D
Sbjct: 253 TVPVPVAVTDAEEASSSIPDLDVLEASMLSQLGVQRKKEIDRGLTLVGPHRDDLAVLLGD 312

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
           Y  K     + S GE   + + + LA   L+S   G  PIL+LD++ A LD  +R  L  
Sbjct: 313 YPAKG----YASHGETWSMALALRLAEFHLLS-ADGSEPILILDDVFAELDSKRRQKLVG 367

Query: 337 IVTDIGSQIFMTGTDKSVFDSLNET 361
           I  +    +        + D+L E+
Sbjct: 368 IAMEAEQVLITAAVGDDLPDNLAES 392


>gi|56418539|ref|YP_145857.1| recombination protein F [Geobacillus kaustophilus HTA426]
 gi|81675966|sp|Q5L3Y9|RECF_GEOKA RecName: Full=DNA replication and repair protein recF
 gi|56378381|dbj|BAD74289.1| DNA replication and repair protein [Geobacillus kaustophilus
           HTA426]
          Length = 372

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 159/366 (43%), Gaps = 21/366 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L ++ +RNY    L F     + +G+N  GKTN++EAI  L+  +  R ++  D+ R   
Sbjct: 6   LTLTNYRNYEYETLNFGEGVNVILGENAQGKTNMMEAIYVLAMAKSHRTSNDKDLIR--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +   +A++EG       S+ LE   ++  +  RC   N +  + + +   HL +    
Sbjct: 63  --WNEEYAKIEGRAEKRSGSLTLELLISKKGKKARC---NHIEQQRLSQYVGHLNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RRRF+D  +  + P +   +  +++L++ RN  L         D + 
Sbjct: 118 PEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMMQARERSDEAV 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIM--EYVQKENFPHIKLSLTGFLDGKFDQSF 240
              +  Q+  L  KI + R + ++ L    M   Y        + +     +D       
Sbjct: 178 LDVLTEQLVLLAAKITLRRRQFLSLLEQWAMPIHYEISRGAEQLCIRYEPSVDVSEKAEL 237

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             + E Y++     R+ +     TL+GPHR D I  + +       GS G+Q+   + + 
Sbjct: 238 SRIVEAYSETFAAMREREVQRGTTLVGPHRDD-IAFFVNGKNVQTFGSQGQQRTTALAVK 296

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSL 358
           LA   LI +  G  PILLLD++ + LD+ ++  L   +     Q F+T T  D    D +
Sbjct: 297 LAELELIFSELGDYPILLLDDVLSELDDFRQTHLLDAIRK-KVQTFVTTTSIDGIKHDII 355

Query: 359 NETAKF 364
            E A +
Sbjct: 356 QEAAIY 361


>gi|228961756|ref|ZP_04123359.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228797950|gb|EEM44960.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 375

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRSTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|229176168|ref|ZP_04303660.1| DNA replication and repair protein recF [Bacillus cereus MM3]
 gi|228607327|gb|EEK64657.1| DNA replication and repair protein recF [Bacillus cereus MM3]
          Length = 375

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|293400052|ref|ZP_06644198.1| DNA replication and repair protein RecF [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306452|gb|EFE47695.1| DNA replication and repair protein RecF [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 366

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 167/355 (47%), Gaps = 19/355 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  + + +FRNY  L+ VF     +  G N  GKTN+LEA+ +LS  R  R  +  D+
Sbjct: 1   MRVSEIRLHDFRNYEDLQAVFSDGIHVLAGKNAQGKTNLLEALLYLSTTRSHRTNTDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S +FF   A++E      DI I   T +++        + V RV D + +   + +
Sbjct: 61  IREKSEAFFIR-AKIEKEHKKEDIQI---TVNEKGKNLFIYQNPVNRVSDFIGEFNAVMF 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
               M  +F+     RRRF+D  +  I  ++   +    +L++ RN  L + + D ++  
Sbjct: 117 CPDDMS-LFNASPRVRRRFVDMELSKISKKYVSTLYVALKLLKERNAYLKQEHVDKAYLE 175

Query: 185 SIEAQMAELGVKINIAR----VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            + +Q+ E  V I   R     E++        E  Q +   +I        D   +   
Sbjct: 176 VLTSQLIEEEVVIIRQRHYFLKELLEKCQKFYKELSQDDTLLNISYDSCIPFDEDKNVMK 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            ALK++YAK L      D   ++T+IG H+ D      DK +   + S G+++ VL+ + 
Sbjct: 236 EALKKKYAKHL----ARDIYLKQTIIGIHKEDFTFMINDKDLA-TYASQGQKRSVLLALK 290

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKS 353
           +    +I +     P+LLLD++ + LD  +R    +++T + +  QIF++ TD +
Sbjct: 291 IGMVYMIRDIIQEFPVLLLDDVFSELDVYRRE---KLLTSLPAEVQIFISTTDTT 342


>gi|70733516|ref|YP_257155.1| recombination protein F [Pseudomonas fluorescens Pf-5]
 gi|97180867|sp|Q4KKS8|RECF_PSEF5 RecName: Full=DNA replication and repair protein recF
 gi|68347815|gb|AAY95421.1| DNA replication and repair protein RecF [Pseudomonas fluorescens
           Pf-5]
          Length = 367

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 160/347 (46%), Gaps = 14/347 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   +      +  +  G NG GKT++LEAI  L   R FR A    V +   
Sbjct: 6   VSVTAVRNLHPVTFSPSPRINLLYGANGSGKTSVLEAIHLLGLARSFRSARLLPVIQYEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +  + F +VE  +G    S+ + +RD +    ++I+    R   +L + L +  + P  
Sbjct: 66  LAC-TVFGQVELAQG-GHSSLGI-SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPDS 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D++  ++ + +
Sbjct: 123 FRLLEGAPKIRRQFLDWGVFHVEPRFMSTWQRLQKALRQRNSWLRHGTLDAASQAAWDRE 182

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           + +   +I+  R   I AL   + E    E      L+L+ +     D+    L E  A 
Sbjct: 183 LCQASAEIDEYRRAYIKALKP-VFERTLGELLQLEGLTLSYYRGWDKDRE---LSEVLAT 238

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
            L   ++M      T  GP R+DL +      A  I   S G+QK+V+  + +A   L+S
Sbjct: 239 ALHRDQQMGH----TQAGPQRADLRLRLGGHNAADIL--SRGQQKLVVCALRIAQGHLVS 292

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
                  I L+D++ + LDE  R AL R++ D+  Q+F+T  D  + 
Sbjct: 293 QARRGQCIYLVDDLPSELDEQHRRALCRLLEDLRCQVFITCVDHELL 339


>gi|118497329|ref|YP_898379.1| RecFOR complex, RecF component [Francisella tularensis subsp.
           novicida U112]
 gi|195536015|ref|ZP_03079022.1| RecF/RecN/SMC N domain protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|208779116|ref|ZP_03246462.1| RecF/RecN/SMC N domain protein, putative [Francisella novicida FTG]
 gi|254372694|ref|ZP_04988183.1| RecFOR complex [Francisella tularensis subsp. novicida GA99-3549]
 gi|254374152|ref|ZP_04989634.1| DNA replication and repair protein recF [Francisella novicida
           GA99-3548]
 gi|259563659|sp|A0Q5W0|RECF_FRATN RecName: Full=DNA replication and repair protein recF
 gi|118423235|gb|ABK89625.1| RecFOR complex, RecF component [Francisella novicida U112]
 gi|151570421|gb|EDN36075.1| RecFOR complex [Francisella novicida GA99-3549]
 gi|151571872|gb|EDN37526.1| DNA replication and repair protein recF [Francisella novicida
           GA99-3548]
 gi|194372492|gb|EDX27203.1| RecF/RecN/SMC N domain protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|208744916|gb|EDZ91214.1| RecF/RecN/SMC N domain protein, putative [Francisella novicida FTG]
          Length = 349

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 161/356 (45%), Gaps = 15/356 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRN  +    F       VG NG GKT+ILE+I FLS  R FR +    +    +
Sbjct: 6   LRLQNFRNIPAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIINHNA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F   + +    +   +I+I L +R   S    ++N  + +   E+ ++L I  + P  
Sbjct: 66  DEFI-IYTKAYNPD---EITISL-SRKKNSNNISKLNLEIQKNHTEITRNLPIQLINPES 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             I +  + +R + LD   F +D    +     + L++ RN  L + Y   S+  SI+ +
Sbjct: 121 FNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNY-PYSYILSIDKK 179

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           + E    ++  R      L   I E +   N P+++L +  F      +S   + EE   
Sbjct: 180 LCEFAEILDYKRHAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKSLAQVLEE--- 235

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
                   D+  + T  GPH++D+++    K I     S G+QK+++  + LA   + ++
Sbjct: 236 ----SFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQGEIHNS 290

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
                 I L+D+I++ LD      LF  +  + SQ+F+T T+K+  +   +T  ++
Sbjct: 291 ENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSYI 346


>gi|25026560|ref|NP_736614.1| recombination protein F [Corynebacterium efficiens YS-314]
 gi|259508308|ref|ZP_05751208.1| RecF protein [Corynebacterium efficiens YS-314]
 gi|51316473|sp|Q8FUL4|RECF_COREF RecName: Full=DNA replication and repair protein recF
 gi|23491839|dbj|BAC16814.1| putative DNA replication and repair protein RecF [Corynebacterium
           efficiens YS-314]
 gi|259164126|gb|EEW48680.1| RecF protein [Corynebacterium efficiens YS-314]
          Length = 398

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 165/370 (44%), Gaps = 40/370 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L + +FR++  L++      TIF+G NG GKTNI+EAI +L+     R ++ A + R
Sbjct: 3   IRSLELRDFRSWPELKVELKPGITIFIGRNGFGKTNIVEAIGYLAHLSSHRVSTDAPLVR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             +  +  S  A  +G E  A + IK       +    QIN   ++   EL   ++    
Sbjct: 63  ANAGDARISAVAVNQGRELAAHLLIK-----PHAANQGQINRTRVKSPRELLGVIKTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGYF 178
            P    +  G   ERRR+LD ++    PR      D++++++ RN LL         GY 
Sbjct: 118 APEDLALVRGEPAERRRYLDDIIATRRPRMAGVKADYDKVLKQRNALLKTATIALRRGYG 177

Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFPH------ 223
                +++      + Q+A LG ++  AR  ++  LSS I +  Q    E+ P       
Sbjct: 178 TEEGAAALATLDTWDGQLARLGAEVMAARFALVQDLSSQIRDAYQTIAPESRPAAVNYKT 237

Query: 224 -IKLSLTGFLDGKFDQSF--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
            I   L  F  G+FD       L  E A K    R+ +     +L+GPHR DL +    +
Sbjct: 238 TIDQGLAQF--GEFDAGIIEATLLTELAAK----RQREIERGMSLVGPHRDDLELHLGGQ 291

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                  S GE     + + +A   L+  + G  PIL+LD++ + LD  +R  L  I  D
Sbjct: 292 PAK-GFASHGETWSFALSMRIAEFNLL-RSDGTDPILILDDVFSELDAGRREKLVGIARD 349

Query: 341 IGSQIFMTGT 350
              Q+ +T  
Sbjct: 350 -AEQVIITAA 358


>gi|169823701|ref|YP_001691312.1| DNA replication and repair protein [Finegoldia magna ATCC 29328]
 gi|303234454|ref|ZP_07321092.1| DNA replication and repair protein RecF [Finegoldia magna BVS033A4]
 gi|167830506|dbj|BAG07422.1| DNA replication and repair protein [Finegoldia magna ATCC 29328]
 gi|302494409|gb|EFL54177.1| DNA replication and repair protein RecF [Finegoldia magna BVS033A4]
          Length = 355

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 170/362 (46%), Gaps = 35/362 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  +RN+  + L F     + VG N  GKTNILEAI+    G+ F+  + + + +
Sbjct: 3   VQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHLIK 62

Query: 67  IGSPSFFSTFARV------EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            G        AR+      +G E   DI+IK       + + L +N+  +  + E N++ 
Sbjct: 63  FGEDE-----ARIVMDVYDDGFEDKIDITIK------SNEKILNVNEAFVNTIKEYNEYF 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                 P   +I       RR+FLD  +  +D  +R  +  + +++  RN+L+    ++S
Sbjct: 112 ECIVFKPDDLKIIKESKSLRRKFLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNS 171

Query: 181 SWCSSIEA---QMAELGVKINIAR---VEMINALSSLIMEYVQKEN---FPHIKLSLTGF 231
            +   ++A   Q+++ G  I   R   VE ++ ++  + + +  EN   +   K S+  +
Sbjct: 172 YFNEQLKALNIQLSDFGSYIMHKRKSYVERLHLIAKNVCKNLSDENDDLYMENKFSIR-Y 230

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           ++   DQ     K  Y K L D  + D  +++T +G HR DL +   DK       S  +
Sbjct: 231 VEDMTDQ-----KNTYYKSLRDILEKDLENKQTNLGIHRDDLDILINDKQAKF-FASQAQ 284

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            +  ++ + LA   L        PI+LLD++ + LD+ + N + R + D   Q F+T ++
Sbjct: 285 VRTAILSMKLAQLDLSRFYNDRMPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSE 342

Query: 352 KS 353
           ++
Sbjct: 343 RA 344


>gi|229164443|ref|ZP_04292371.1| DNA replication and repair protein recF [Bacillus cereus R309803]
 gi|228619048|gb|EEK75946.1| DNA replication and repair protein recF [Bacillus cereus R309803]
          Length = 375

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEEFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGTKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|297588054|ref|ZP_06946698.1| recombination protein F [Finegoldia magna ATCC 53516]
 gi|297574743|gb|EFH93463.1| recombination protein F [Finegoldia magna ATCC 53516]
          Length = 355

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 165/359 (45%), Gaps = 29/359 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  +RN+  + L F     + VG N  GKTNILEAI+    G+ F+  + + + +
Sbjct: 3   VQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHLIK 62

Query: 67  IGSPSFFSTFARV------EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            G        AR+      +G E   DI+IK       + + L +N+  +  + E N++ 
Sbjct: 63  FGEDE-----ARIVMDVYDDGFEDKIDITIK------SNEKILNVNEAFVNTIKEYNEYF 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                 P   +I       RR+ LD  +  +D  +R  +  + +++  RN+L+    ++S
Sbjct: 112 ECIVFKPDDLKIVKESKSLRRKLLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNS 171

Query: 181 SWCSSIEA---QMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
            +   ++A   Q+A+ G  I   R   VE ++ ++  +   +  EN    KL +      
Sbjct: 172 YFNEQLKALNIQLADNGSYIMHKRKSYVERLHLIAKNVCSNLSDEN---DKLDMENNFSI 228

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           ++ +     K  Y K L D    D  +++T +G HR DL +   DK+      S  + + 
Sbjct: 229 EYVEDMTNQKNTYYKSLVDILDKDLENKQTNLGIHRDDLDILINDKSAKF-FASQAQVRT 287

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            ++ + LA   L        PI+LLD++ + LD+ + N + R + D   Q F+T ++++
Sbjct: 288 AILSMKLAQLDLSRFYNDRLPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSERA 344


>gi|256957012|ref|ZP_05561183.1| RecF protein [Enterococcus faecalis DS5]
 gi|256947508|gb|EEU64140.1| RecF protein [Enterococcus faecalis DS5]
 gi|315036376|gb|EFT48308.1| recombination protein F [Enterococcus faecalis TX0027]
          Length = 375

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 166/355 (46%), Gaps = 18/355 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A++ G+      ++ LE       R  ++N +  + +      L +  
Sbjct: 61  --IG---WEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +       D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235
            +   +  Q+AE G K+  AR+  +  L        QK    H + +LT           
Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQK--ISHGRETLTIDYASSIPIDN 233

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            D S   L+ +  ++L + RK +     T +GPHR DL+     + +   +GS G+Q+  
Sbjct: 234 TDLSLETLQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTT 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            + I LA   L+ + TG  P+LLLD++ + LD +++  L   + +   Q F+T T
Sbjct: 293 ALSIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 346


>gi|187931536|ref|YP_001891520.1| RecFOR complex, RecF component [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|259563658|sp|B2SG84|RECF_FRATM RecName: Full=DNA replication and repair protein recF
 gi|187712445|gb|ACD30742.1| RecFOR complex, RecF component [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 349

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 161/356 (45%), Gaps = 15/356 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRN  +    F       VG NG GKT+ILE+I FLS  R FR +    +    +
Sbjct: 6   LRLQNFRNIHAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIINHNA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F   + +    +   +I+I L +R   S    ++N  + +   E+ ++L I  + P  
Sbjct: 66  DEFI-IYTKAYNPD---EITISL-SRKKNSNNISKLNLEIQKNHTEITRNLPIQLINPES 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             I +  + +R + LD   F +D    +     + L++ RN  L + Y   S+  SI+ +
Sbjct: 121 FNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNY-PYSYILSIDKK 179

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           + E    ++  R      L   I E +   N P+++L +  F      +S   + EE   
Sbjct: 180 LCEFAEILDYKRQAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKSLAQVLEE--- 235

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
                   D+  + T  GPH++D+++    K I     S G+QK+++  + LA   + ++
Sbjct: 236 ----SFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQGEIHNS 290

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
                 I L+D+I++ LD      LF  +  + SQ+F+T T+K+  +   +T  ++
Sbjct: 291 ENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSYI 346


>gi|290968151|ref|ZP_06559696.1| putative recombination protein F [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781826|gb|EFD94409.1| putative recombination protein F [Megasphaera genomosp. type_1 str.
           28L]
          Length = 367

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 168/367 (45%), Gaps = 19/367 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  + +  FRNY ++ L F     IF G+NG GKTN+LE++     G+ +R  +  ++
Sbjct: 1   MKITGVRLFNFRNYKNMELNFHNMIHIFYGNNGQGKTNLLESLYIAGIGKTYRGIADREL 60

Query: 65  TRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R      S    F R    + +  I  ++ ++       L IN+    +  E    +  
Sbjct: 61  IRWEQEEGSIIVRFLRNHVEQQVKIILSRVSSKQ------LWINETKT-IGREFFGSIPE 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
               P   ++  G    RR+F+D  +  ++  + R ++ +  ++  RN LL E  +D + 
Sbjct: 114 ILFSPDDLQLIKGAPSLRRKFMDMELSQVNRMYYRCLLQYNHILAQRNALLKEVRYDKNI 173

Query: 183 C-SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238
             +  + Q+A L   +   R+EM+  ++ L  + + KE     K SL  +    ++Q   
Sbjct: 174 SFAEWDTQLAVLAADMVKKRLEMLKKINVL-ADKIHKE-LTQGKESLHVYYKQPYNQDRH 231

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLV 297
           +      +YA+ L +    DS    T IGPHR D    +C +      + S G+Q+  ++
Sbjct: 232 TVILQASQYARLLQENIAADSYKNATSIGPHRDDFT--FCIEGKEAKKYASQGQQRTAIL 289

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA    + +  G  PILLLD++ + LD  +R  L + V     Q F+T TD  +F  
Sbjct: 290 SLKLAELEFVYSEIGEYPILLLDDVMSELDLLRRKQLLQFVHQ-RIQTFITTTDPLLFSM 348

Query: 358 LNETAKF 364
           L E  ++
Sbjct: 349 LQEGCQW 355


>gi|227523342|ref|ZP_03953391.1| recombination protein F [Lactobacillus hilgardii ATCC 8290]
 gi|227089448|gb|EEI24760.1| recombination protein F [Lactobacillus hilgardii ATCC 8290]
          Length = 373

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 168/375 (44%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++K + +  FRNY    L F     +F+G+N  GKTN+LEAI  L+  R  R ++  ++
Sbjct: 1   MRLKDIALHNFRNYIDQTLQFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S +       ++   G   I + L T+  R+    +IN +    +      L +  
Sbjct: 61  INWQSQTA-QLKGTIQKQLGKVPIELDLGTKGKRA----KINHLEQAKLSSYVGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RR+F+D     +  R+      +++++R RNR L +       D 
Sbjct: 116 FAPEDLSIVKGAPQVRRKFMDMEFGQMSNRYLYNSTQYKKILRQRNRYLRDLQHKIQSDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQ 238
            +   +  Q++  G +I   R++++  L     + V  E     K +LT FL      D+
Sbjct: 176 VYLDVLSDQLSAYGAEIIYQRIQLLKKLEGF-AKNVHTE-ISQGKEALT-FLYQTVVPDE 232

Query: 239 SFCALKEEYA---KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
              +++  Y    K+  D ++ +     TL+GPHR DL      K +  + GS G+Q+  
Sbjct: 233 QLTSIENIYQNLLKQFADIKEKEIQRGTTLLGPHRDDLKFAINKKEVQ-SFGSQGQQRTT 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-V 354
            + + LA   L+   T   PILLLD++ + LD+ ++  L   + D   Q F+T T  S V
Sbjct: 292 ALSVKLAEIDLMKEQTNEYPILLLDDVLSELDDYRQTHLLTAIQD-KVQTFLTTTSLSGV 350

Query: 355 FDSLNETAKFMRISN 369
              L    K  RI+N
Sbjct: 351 QQELLSNPKIFRIAN 365


>gi|319651102|ref|ZP_08005236.1| DNA replication and repair protein recF [Bacillus sp. 2_A_57_CT2]
 gi|317397272|gb|EFV77976.1| DNA replication and repair protein recF [Bacillus sp. 2_A_57_CT2]
          Length = 372

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 166/370 (44%), Gaps = 23/370 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  +RNY  L + F+ +  + +G+N  GKTN++E+I  L+  +  R ++  D+ R
Sbjct: 3   IEQLLLKNYRNYEELEVNFENKVNVILGENAQGKTNVMESIYVLAMAKSHRTSNDKDLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                +   +A++EG       S+ ++   ++  +  +C   N +  + + +   ++ + 
Sbjct: 63  -----WDQEYAKIEGRVQKRQGSLPMQLFISKKGKKAKC---NHIEQQKLSQYVGNMNVV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179
              P    +  G    RRRF+D  +  + P +   +  ++++++ RN  L     +   D
Sbjct: 115 MFAPEDLHLVKGSPQIRRRFIDMEIGQVSPVYLHDISQYQKILQQRNHYLKMLQIKKQTD 174

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGFLDGKF 236
            +    +  Q  E+  KI   R E +  L +    I E + +     +K+      +   
Sbjct: 175 HTMLEILTEQFIEMAAKIVSKRYEFLRLLENWAQPIHEGISR-GLETLKIEYKPSAEVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           +Q    + + Y  K    +  +     T+ GPHR DLI     + +    GS G+Q+   
Sbjct: 234 EQDLSKMVKVYQNKFAKVKNREIDRGVTMFGPHRDDLIFHVNGRDVQ-TFGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   LI +  G  PILLLD++ + LD+ +++ L   +     Q F+T T     D
Sbjct: 293 LSVKLAEIELIHSEIGEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGID 351

Query: 357 --SLNETAKF 364
             +L E A F
Sbjct: 352 HQTLKEAAAF 361


>gi|170719190|ref|YP_001746878.1| recombination protein F [Pseudomonas putida W619]
 gi|226737821|sp|B1J3Y4|RECF_PSEPW RecName: Full=DNA replication and repair protein recF
 gi|169757193|gb|ACA70509.1| DNA replication and repair protein RecF [Pseudomonas putida W619]
          Length = 367

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 160/353 (45%), Gaps = 16/353 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L    +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F  V+  EG  +++ +  E   D ++R   I+    +   +L + L + 
Sbjct: 61  IQYEQAAC-TVFGEVQLSEGGTSNLGVSRERAGDFTIR---IDGQNAKSAAQLAELLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMPAWQRLQKALRQRNSWLRHGTLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL   + E    E      L+L+ +     D+    L
Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKP-VFEQTLSELVELDGLTLSYYRGWDKDRE---L 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLA 302
            E  A  L   ++M      T  GP R+DL +    + A  I   S G+QK+V+  + +A
Sbjct: 233 NEVLASSLLRDQQMG----HTQAGPQRADLRLRLAANNAADIL--SRGQQKLVVCALRIA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
              L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  + 
Sbjct: 287 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELL 339


>gi|323357954|ref|YP_004224350.1| recombinational DNA repair ATPase [Microbacterium testaceum
           StLB037]
 gi|323274325|dbj|BAJ74470.1| recombinational DNA repair ATPase [Microbacterium testaceum
           StLB037]
          Length = 383

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 179/386 (46%), Gaps = 25/386 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FRNYA + +       +FVG NG GKTN++EA+++L+     R +S A + +
Sbjct: 3   VEQLGLRDFRNYAEVDVSLSTGANVFVGRNGQGKTNLVEAVAYLATLGSHRVSSDAPMVK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+    +   R     G   + ++L+     S R  ++N V +R   EL ++ ++    
Sbjct: 63  DGTD---AAIVRARLAHGERSVLLELQLNRQGSNRA-RVNGVNVRTA-ELPRYAQVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P   +I  G    RRRF D+++    PR    + D++R++R R  LL           ++
Sbjct: 118 PEDLQIVRGDPSARRRFADQLIVQRTPRMAAVVADYDRVLRQRTALLKSARARGVRGDAL 177

Query: 187 ------EAQMAELGVKINIARVEMINALSSLI----MEYVQKENFPHIK--LSLTGFLDG 234
                 + ++  LG ++  AR+ + + LS  +          ++ P ++  LS+ G    
Sbjct: 178 GTLDVWDDKLVTLGTELIEARLALASDLSEPVASAYAAIAGADHEPRLEWALSVGGGDPE 237

Query: 235 KFDQSFCA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           + D +  A    L E++   L   R  +     TL+GPHR DL++      +   + S G
Sbjct: 238 EGDAATSAPGGPLAEQFRAALAARRSAELERGLTLVGPHRDDLVLRVRGLPVK-GYASHG 296

Query: 291 EQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           E   V + + LA A ++   +    P+L+LD++ A LD  +R  L  +V      I  + 
Sbjct: 297 ESWSVALALRLASAEILRAESRLGDPVLILDDVFAELDAGRRARLAELVGGYEQVIVTSA 356

Query: 350 TDKSVFDSLNETAKFMRISNHQALCI 375
            ++ V D+L   A  +R+   Q + +
Sbjct: 357 VEEDVPDALR--AHVVRVEAGQIVTV 380


>gi|227500983|ref|ZP_03931032.1| possible recombination protein F [Anaerococcus tetradius ATCC
           35098]
 gi|227216756|gb|EEI82154.1| possible recombination protein F [Anaerococcus tetradius ATCC
           35098]
          Length = 359

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 159/349 (45%), Gaps = 19/349 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L ++ FRNY    + F+    IF+GDN  GKTN+LE++ +L+  R F++    D+ R
Sbjct: 3   IKDLKLNNFRNYFYESVEFNKDTNIFIGDNAQGKTNLLESVYYLANARSFKKIRDKDIVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S S       V       ++ I++  +D    + + +N V      +L    +I    
Sbjct: 63  F-SQSQMKLAGTVRKGRSFKEVLIEVNDKD----KSIFVNGVKYDRSKDLKSLFKIVLFT 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184
           P    I       RR  +D+++  ID  ++    D+++++  RN+LL  T+  +     +
Sbjct: 118 PEDLAIIKDGPNLRRDLIDKIIEGIDLSYKSYKRDYDKILYQRNKLLKNTKSQYFKEQLA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + +  +++LG +I  +R++ I  +     ++         +L L+   D        + K
Sbjct: 178 AFDKSLSKLGYRIYKSRLKFIKIIDQYARDFHSSLTSSKEELRLSYLAD-------ISPK 230

Query: 245 --EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             EEY +     R  D     +  G HR D+ +    K  T    S G+Q+  ++ I LA
Sbjct: 231 DLEEYEEIFATSRDKDLKYLTSQRGIHRDDIEITINGKD-TKNFASQGQQRSAILNIRLA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             +LI   TG   ++L D++ + LDE  + ++F +    G Q  +T T+
Sbjct: 290 EVKLIKEVTGDEAVILFDDVFSELDE--KRSVFLLENLNGYQTIITATN 336


>gi|187932670|ref|YP_001884269.1| recombination protein F [Clostridium botulinum B str. Eklund 17B]
 gi|226737779|sp|B2THB7|RECF_CLOBB RecName: Full=DNA replication and repair protein recF
 gi|187720823|gb|ACD22044.1| DNA replication and repair protein RecF [Clostridium botulinum B
           str. Eklund 17B]
          Length = 361

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 173/371 (46%), Gaps = 21/371 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + ++ +RNY +L L       +F+GDN  GKTN+LE+I + +  +  R +   D+  
Sbjct: 3   IKAIMLANYRNYNNLELNLSEGVNVFIGDNAQGKTNVLESIYYCAFAKSHRTSRDKDLIN 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              + ++ S     + ++   DI I    RD +  + +++N + I  + EL     +   
Sbjct: 63  WKENEAYISLLVGKKRLDKRIDIKI---LRDGK--KAIKVNSIKINKIGELFGTFNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   +I       RR+FLD  +  I  ++   ++ + +++  RN +L    F+      
Sbjct: 118 SPEDLKIIKESPGIRRKFLDMELCQISKKYYFNLVQYNKILNERNVILRSRDFNKDILEV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSFCALK 244
            + Q+ E    I   R+E I+ ++     Y  K  F H +++ +G  D  F   S    K
Sbjct: 178 YDLQLVECADYIVKERLEYIDKIN-----YYGK--FIHNEIT-SGKEDIVFKYDSGIKFK 229

Query: 245 EEYAKKLFDGRKMDSMSRR----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
           +++     +  K + +  R    T IGPHR D  V   +       GS G+Q+  ++ + 
Sbjct: 230 DDFKYAFLEKLKNNLLRDREQGITSIGPHRDDFNV-LINNIDVKKFGSQGQQRTAVLTMK 288

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            +  ++I   T   PILLLD++ + LD +++  +   + DI + I  TG +  + D L++
Sbjct: 289 FSSLKIIKEITKEYPILLLDDVLSELDINRKRYVLSTLNDIQTIITCTGIN-DLEDYLDD 347

Query: 361 TAKFMRISNHQ 371
            +K  ++ N +
Sbjct: 348 KSKVFKVCNGE 358


>gi|42779085|ref|NP_976332.1| recombination protein F [Bacillus cereus ATCC 10987]
 gi|49477032|ref|YP_034364.1| recombination protein F [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118475782|ref|YP_892933.1| recombination protein F [Bacillus thuringiensis str. Al Hakam]
 gi|196041944|ref|ZP_03109231.1| DNA replication and repair protein RecF [Bacillus cereus
           NVH0597-99]
 gi|196045554|ref|ZP_03112785.1| DNA replication and repair protein RecF [Bacillus cereus 03BB108]
 gi|206975840|ref|ZP_03236751.1| DNA replication and repair protein RecF [Bacillus cereus H3081.97]
 gi|217957585|ref|YP_002336127.1| recombination protein F [Bacillus cereus AH187]
 gi|222093778|ref|YP_002527825.1| recombination protein f [Bacillus cereus Q1]
 gi|225862061|ref|YP_002747439.1| DNA replication and repair protein RecF [Bacillus cereus 03BB102]
 gi|228918104|ref|ZP_04081632.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228930498|ref|ZP_04093498.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931510|ref|ZP_04094420.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228988721|ref|ZP_04148806.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229124995|ref|ZP_04254169.1| DNA replication and repair protein recF [Bacillus cereus 95/8201]
 gi|229142241|ref|ZP_04270765.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST26]
 gi|229187721|ref|ZP_04314857.1| DNA replication and repair protein recF [Bacillus cereus BGSC 6E1]
 gi|229199684|ref|ZP_04326327.1| DNA replication and repair protein recF [Bacillus cereus m1293]
 gi|301051745|ref|YP_003789956.1| recombination protein F [Bacillus anthracis CI]
 gi|51316288|sp|Q73FK2|RECF_BACC1 RecName: Full=DNA replication and repair protein recF
 gi|81697025|sp|Q6HQ00|RECF_BACHK RecName: Full=DNA replication and repair protein recF
 gi|166220700|sp|A0R883|RECF_BACAH RecName: Full=DNA replication and repair protein recF
 gi|226737771|sp|B7HPS0|RECF_BACC7 RecName: Full=DNA replication and repair protein recF
 gi|254790462|sp|C1ES11|RECF_BACC3 RecName: Full=DNA replication and repair protein recF
 gi|254790463|sp|B9IYH1|RECF_BACCQ RecName: Full=DNA replication and repair protein recF
 gi|42735000|gb|AAS38940.1| DNA replication and repair protein RecF [Bacillus cereus ATCC
           10987]
 gi|49328588|gb|AAT59234.1| DNA replication and repair protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118415007|gb|ABK83426.1| DNA replication and repair protein RecF [Bacillus thuringiensis
           str. Al Hakam]
 gi|196023761|gb|EDX62437.1| DNA replication and repair protein RecF [Bacillus cereus 03BB108]
 gi|196027199|gb|EDX65819.1| DNA replication and repair protein RecF [Bacillus cereus
           NVH0597-99]
 gi|206745934|gb|EDZ57330.1| DNA replication and repair protein RecF [Bacillus cereus H3081.97]
 gi|217067704|gb|ACJ81954.1| DNA replication and repair protein RecF [Bacillus cereus AH187]
 gi|221237823|gb|ACM10533.1| DNA replication and repair protein [Bacillus cereus Q1]
 gi|225790870|gb|ACO31087.1| DNA replication and repair protein RecF [Bacillus cereus 03BB102]
 gi|228583779|gb|EEK41954.1| DNA replication and repair protein recF [Bacillus cereus m1293]
 gi|228595789|gb|EEK53473.1| DNA replication and repair protein recF [Bacillus cereus BGSC 6E1]
 gi|228641259|gb|EEK97566.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST26]
 gi|228658496|gb|EEL14162.1| DNA replication and repair protein recF [Bacillus cereus 95/8201]
 gi|228771033|gb|EEM19514.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228828153|gb|EEM73877.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829217|gb|EEM74854.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228841584|gb|EEM86700.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300373914|gb|ADK02818.1| recombination protein F [Bacillus cereus biovar anthracis str. CI]
 gi|324323998|gb|ADY19258.1| recombination protein F [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 375

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGTKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|30018282|ref|NP_829913.1| recombination protein F [Bacillus cereus ATCC 14579]
 gi|218232841|ref|YP_002364859.1| recombination protein F [Bacillus cereus B4264]
 gi|228955742|ref|ZP_04117737.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229051161|ref|ZP_04194705.1| DNA replication and repair protein recF [Bacillus cereus AH676]
 gi|229072957|ref|ZP_04206153.1| DNA replication and repair protein recF [Bacillus cereus F65185]
 gi|229112905|ref|ZP_04242436.1| DNA replication and repair protein recF [Bacillus cereus Rock1-15]
 gi|229130738|ref|ZP_04259691.1| DNA replication and repair protein recF [Bacillus cereus BDRD-Cer4]
 gi|229148042|ref|ZP_04276381.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST24]
 gi|229153651|ref|ZP_04281827.1| DNA replication and repair protein recF [Bacillus cereus m1550]
 gi|229181738|ref|ZP_04309061.1| DNA replication and repair protein recF [Bacillus cereus 172560W]
 gi|229193743|ref|ZP_04320684.1| DNA replication and repair protein recF [Bacillus cereus ATCC
           10876]
 gi|51316395|sp|Q81JD2|RECF_BACCR RecName: Full=DNA replication and repair protein recF
 gi|226737770|sp|B7HIH7|RECF_BACC4 RecName: Full=DNA replication and repair protein recF
 gi|29893822|gb|AAP07114.1| DNA replication and repair protein recF [Bacillus cereus ATCC
           14579]
 gi|218160798|gb|ACK60790.1| DNA replication and repair protein RecF [Bacillus cereus B4264]
 gi|228589768|gb|EEK47646.1| DNA replication and repair protein recF [Bacillus cereus ATCC
           10876]
 gi|228601771|gb|EEK59269.1| DNA replication and repair protein recF [Bacillus cereus 172560W]
 gi|228629837|gb|EEK86490.1| DNA replication and repair protein recF [Bacillus cereus m1550]
 gi|228635467|gb|EEK91958.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST24]
 gi|228652755|gb|EEL08640.1| DNA replication and repair protein recF [Bacillus cereus BDRD-Cer4]
 gi|228670584|gb|EEL25897.1| DNA replication and repair protein recF [Bacillus cereus Rock1-15]
 gi|228710203|gb|EEL62181.1| DNA replication and repair protein recF [Bacillus cereus F65185]
 gi|228722224|gb|EEL73625.1| DNA replication and repair protein recF [Bacillus cereus AH676]
 gi|228803970|gb|EEM50594.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 375

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|297570616|ref|YP_003696390.1| DNA replication and repair protein RecF [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296930963|gb|ADH91771.1| DNA replication and repair protein RecF [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 410

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 170/388 (43%), Gaps = 51/388 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +++FR+Y  + + F    T FVG+NG GKTN++EAI +L+     R  + A + R
Sbjct: 3   ISDLALNDFRSYRDVVVSFSPGITTFVGENGQGKTNLVEAIGYLATFSSHRVNADAALVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+    +   R + M G +   ++LE    R+ R  +IN    +  D L   +R     
Sbjct: 63  QGA---NAAVVRAKVMHGDSPTMVELEILSGRANRA-RINRGNAQPSDVLGI-VRTVVFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------GYF 178
           P    +  G    RRRFLD ++  + PR  +   D+E++ R R  LL          G  
Sbjct: 118 PEDLELIKGDPGVRRRFLDDVMVQLRPRMAQVKADYEKVARQRAALLKTIWKARRRGGPV 177

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK-------------------- 218
           D +     ++Q+A LG +I   R  +++AL   +  Y ++                    
Sbjct: 178 DETMLDIFDSQLAALGARIIGQRARIVSALRPYVEAYYREVSGGKGVARIDYAANIDARS 237

Query: 219 -ENFP---HIKLSLTGFLDGKFDQSFCALKEEYA------KKLFDGRKMDSMSRRTLIGP 268
             +FP    I    +G L  +  Q    L++E A        L + R+ +      L+GP
Sbjct: 238 GWDFPAITDISADSSGALAAEIAQHERELQDESATAARLQATLREWREQEIERGVNLVGP 297

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN------TTGFAPILLLDEI 322
           HR D +  +        + S GE     + + LA  R++ +      T    PIL+LD++
Sbjct: 298 HRDDFVT-FLGTLPAKGYASHGESWSYALSLRLASWRVLRDDDSGNWTDDGEPILILDDV 356

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            A LD  +R  L  IV + GSQ+F+T  
Sbjct: 357 FAELDARRRQRLAAIVRE-GSQVFVTAA 383


>gi|302205160|gb|ADL09502.1| Recombination protein F [Corynebacterium pseudotuberculosis C231]
 gi|302329718|gb|ADL19912.1| Recombination protein F [Corynebacterium pseudotuberculosis 1002]
 gi|308275401|gb|ADO25300.1| Recombination protein F [Corynebacterium pseudotuberculosis I19]
          Length = 404

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 169/383 (44%), Gaps = 38/383 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L++ +FR++A   +  +   T+FVG NG GKTNI+EAI +++     R +  + +  
Sbjct: 3   IRELSLRDFRSWADCHVNLEPGVTVFVGRNGFGKTNIVEAIGYIAHLGSHRVSQDSPLVH 62

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G  S   S  A  +G E  A + IK      +     QIN   ++    L   +R    
Sbjct: 63  QGKDSARVSVTAVNQGRELTAHMLIK-----SKGTNQAQINRTRLKSPRGLLGVVRTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------G 176
            P    +  G   ERRR+LD +V    PR      D++++++ RN LL           G
Sbjct: 118 SPEDLSLVRGEPGERRRYLDHIVATRKPRLAGVKADYDKVLKQRNSLLKTASASLRRGYG 177

Query: 177 YFDSSWCS--SIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP--------- 222
             D + C+    +AQ+A LG ++  AR  ++  L+ L+      +  E+ P         
Sbjct: 178 ADDGTLCTLDVWDAQLARLGSELIHARHSLVEELTPLVHSAYARIAPESRPARINYESTV 237

Query: 223 HIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV---DYC 278
            + +++T   +          L+     +L   RK +     TL+GPHR DL V   DY 
Sbjct: 238 PVPVAVTDAEEASSSIPDLDVLEASMLSQLGVQRKKEIDRGLTLVGPHRDDLAVLLGDYP 297

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            K     + S GE   + + + LA   L+S   G  PIL+LD++ A LD  +R  L  I 
Sbjct: 298 AKG----YASHGETWSMALALRLAEFHLLS-ADGSEPILILDDVFAELDSKRRQKLVGIA 352

Query: 339 TDIGSQIFMTGTDKSVFDSLNET 361
            +    +        + D+L E+
Sbjct: 353 MEAEQVLITAAVGDDLPDNLAES 375


>gi|296500842|ref|YP_003662542.1| recombination protein F [Bacillus thuringiensis BMB171]
 gi|296321894|gb|ADH04822.1| recombination protein F [Bacillus thuringiensis BMB171]
          Length = 375

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 168/376 (44%), Gaps = 16/376 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240
                 Q+ E G KI   R E ++ L        +        +++     +D       
Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLHLLQQWAAPIHRGISRGLEELEIVYKPSVDVSESMDL 237

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + + 
Sbjct: 238 SKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALSLK 296

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSL 358
           LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D    ++L
Sbjct: 297 LAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIEHETL 355

Query: 359 NETAKFMRISNHQALC 374
            E AK + ++N    C
Sbjct: 356 KE-AKTIHVTNGTVDC 370


>gi|256821231|ref|YP_003145194.1| DNA replication and repair protein RecF [Kangiella koreensis DSM
           16069]
 gi|256794770|gb|ACV25426.1| DNA replication and repair protein RecF [Kangiella koreensis DSM
           16069]
          Length = 369

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 154/346 (44%), Gaps = 17/346 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L+I  FRN    RL F  Q  I  G+N  GKT+ILE++  L  GR FR + ++ +
Sbjct: 1   MHIQSLSIQNFRNLQPSRLHFSPQLNIIYGNNAAGKTSILESLFILGHGRSFRTSRHSKL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S F+ F+ +        + ++    +D +VR   +N   +  + +L   + I  
Sbjct: 61  INYEQDS-FTLFSELYSHNVQQRLGVQRFRNNDVNVR---LNQEPLAKLSDLVSLIPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P    + +     RR+ LD  VF ++    +R    +R++  RN+LL +G        
Sbjct: 117 LAPEHYELLTKGPSGRRKLLDWGVFHVEHSFLKRWQACQRIILQRNKLL-KGSLSYKDLE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + ++Q+  L  ++N  R +  ++LS    E +  +  P ++LSL  +   +       L 
Sbjct: 176 AWDSQLIPLSDQVNQYRQDYCDSLSPYFHE-IASQFLPDVQLSLEFYKGWQGKDLESLLV 234

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+Y K    G    ++ +  L       L  DY          S G+QK+V   + LA  
Sbjct: 235 EQYLKDKKLGYTQSTIQKADLKILSGKRLAADYL---------SRGQQKLVTTALKLAQL 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMT 348
           RL        P+ LLD+I A LDE+ +  L   +       QIF+T
Sbjct: 286 RLAQERGQQYPVFLLDDIGAELDENHQKLLLNFLAKQPEKQQIFIT 331


>gi|283768638|ref|ZP_06341550.1| putative recombination protein F [Bulleidia extructa W1219]
 gi|283105030|gb|EFC06402.1| putative recombination protein F [Bulleidia extructa W1219]
          Length = 359

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 162/355 (45%), Gaps = 32/355 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L +S +RNY  L++ F     + VG N  GKTN++EA+ +LS  R FR         
Sbjct: 3   IKSLELSHYRNYHHLQVSFQPYLNVIVGKNAQGKTNLIEALYYLSLCRSFRTNQDQ---- 58

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRC--------LQINDVVIRVVDELN 117
                     A ++  E  A+++ ++E R   S +RC        L I  + I    E  
Sbjct: 59  ----------ALIQKEEKYANLACQIEERKQESYLRCILHGNGKSLFIGKINISKTSEFI 108

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
             L +    P    +FS     RR+F+D+ +  +  ++   +  ++ L++ RN LL +  
Sbjct: 109 GRLNVVLFSPEDIYLFSQAPKARRKFMDQELMKLSKKYLFHLTRYQILLKERNMLLRKTK 168

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFP-HIKLSLTGFLDGK 235
            D +    ++ QM E  V+I   R+  +  ++  I    Q     P ++K+ +   ++ K
Sbjct: 169 IDETMLDILDQQMVESEVEILKRRISFLQFINQKIESLFQSISGMPLNLKIEIKQGIEVK 228

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
             +     K+E  +     RK D  +R T +G HR D+      K I ++  S G++++V
Sbjct: 229 KIE-----KKELVEAHLSSRKRDIETRITNVGIHRGDIQFLLDGKDILLS-ASQGQKRLV 282

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           ++   L   R I   +    I+LLD++ + LD +++  L   V +   Q F+T T
Sbjct: 283 MIAFKLTILRYIEFISKRKAIVLLDDVLSELDLERQKRLIHAVKN-DYQCFITAT 336


>gi|221135257|ref|ZP_03561560.1| Recombinational DNA repair ATPase [Glaciecola sp. HTCC2999]
          Length = 366

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 162/353 (45%), Gaps = 16/353 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + IS+FRN  S  +   A   + +G NG GK++ LE++ +L  GR FR   +  V
Sbjct: 1   MKLDKVQISQFRNIESATIYPSAHLNVVIGQNGSGKSSFLESLHYLGFGRSFRTNKHRHV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  S FS FA    +    +  I L  R+++      IN    + + +L   + +  
Sbjct: 61  IQSG-LSQFSVFAECSDINN-DNHKIGL-MRNNKDEFLCSINGKRSQRIADLVSQIPVQI 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180
             P    +  G    RR+FLD  +F ++       +++ ++++ RN LL    T     +
Sbjct: 118 FTPQSTELLLGSPSNRRKFLDWGLFHVEQSFFNLSLNYSKILKQRNALLKYKQTGKPVSN 177

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                   Q+A  G  I+  R + I+ L  +I + + K+  P   L ++   +  +D S 
Sbjct: 178 DEMDYWSHQLAIYGENIDTYRQKYISEL-KMIFKRISKQFLPEFSLEIS--YNKGWDSSV 234

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +     K L+D R        T IG H++D+ +   D  +     S G+ ++++  + 
Sbjct: 235 NFVSALREKLLYDTRM-----GYTSIGIHKADIKIK-ADNIVATERLSRGQLRMLVAALQ 288

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           L+    +  +T  + + LLD+I A LDEDKR      +    +Q+F+T  +KS
Sbjct: 289 LSQTLHLFESTNKSGVFLLDDIGAELDEDKRYHFIDALLATNTQLFVTAIEKS 341


>gi|38232645|ref|NP_938412.1| recombination protein F [Corynebacterium diphtheriae NCTC 13129]
 gi|51316242|sp|Q6NKL5|RECF_CORDI RecName: Full=DNA replication and repair protein recF
 gi|38198903|emb|CAE48514.1| DNA replication and repair protein [Corynebacterium diphtheriae]
          Length = 397

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 169/376 (44%), Gaps = 30/376 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L++ +FR++    +  +   T+FVG NG GKTNI+EAI +++     R    + + R
Sbjct: 3   IRELSLRDFRSWPECTVTLEPGVTLFVGRNGFGKTNIVEAIGYVAHLGSHRVFHDSALVR 62

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G  S   S  A   G E  A + IK      +     QIN   ++   EL   ++    
Sbjct: 63  QGKESARVSVTAVNHGRELTAHLLIKA-----KGANQAQINRTRLKSPRELLGVVKTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY- 177
            P    +  G   ERRR+LD ++    PR      D+++++R RN LL         GY 
Sbjct: 118 SPEDLSLVRGDPAERRRYLDHVIATRKPRLGGVKADYDKVLRQRNSLLKTAGAALRRGYG 177

Query: 178 FDSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIK-LSLT 229
            D    S++   ++Q+A LG ++  AR  ++  L  L+ +    +  E+ P HI+ +S  
Sbjct: 178 ADDGALSTLDVWDSQLARLGGQLIHARHSVVRELGPLVHDAYARIAPESRPAHIRYVSTV 237

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV---DYCDKAITIAH 286
            F D     S    +     +L   R  +     +L+GPHR DL V   DY  K      
Sbjct: 238 PFADVVELPSPEEFEAAMLAELGQCRDKEIDRGVSLVGPHRDDLDVVLGDYPAKGFA--- 294

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE   + + + LA   L+ N  G  P+L+LD++ A LD  +R  L  +  +    + 
Sbjct: 295 -SHGETWSMCLSLRLAEFHLLRN-DGTDPVLILDDVFAELDTQRREKLVSVTAEAEQVLI 352

Query: 347 MTGTDKSVFDSLNETA 362
                  + D+L E+A
Sbjct: 353 TAAVGDDLPDTLTESA 368


>gi|206970379|ref|ZP_03231332.1| DNA replication and repair protein RecF [Bacillus cereus AH1134]
 gi|206734956|gb|EDZ52125.1| DNA replication and repair protein RecF [Bacillus cereus AH1134]
          Length = 375

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNNSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|89256653|ref|YP_514015.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica LVS]
 gi|115315066|ref|YP_763789.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502796|ref|YP_001428861.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167010539|ref|ZP_02275470.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254367965|ref|ZP_04983985.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica 257]
 gi|254369521|ref|ZP_04985532.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica FSC022]
 gi|290953408|ref|ZP_06558029.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313369|ref|ZP_06803978.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica URFT1]
 gi|122324928|sp|Q0BL82|RECF_FRATO RecName: Full=DNA replication and repair protein recF
 gi|122500520|sp|Q2A2N7|RECF_FRATH RecName: Full=DNA replication and repair protein recF
 gi|259563657|sp|A7ND52|RECF_FRATF RecName: Full=DNA replication and repair protein recF
 gi|89144484|emb|CAJ79791.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica LVS]
 gi|115129965|gb|ABI83152.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253775|gb|EBA52869.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica 257]
 gi|156253399|gb|ABU61905.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|157122475|gb|EDO66610.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 349

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 161/356 (45%), Gaps = 15/356 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRN  +    F       VG NG GKT+ILE+I FLS  R FR +    +    +
Sbjct: 6   LRLQNFRNIPAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIINHNA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F   + +    +   +I+I L +R   S    ++N  + +   E+ ++L I  + P  
Sbjct: 66  DEFI-IYTKAYNPD---EITISL-SRKKNSNNISKLNLEIQKNHTEITRNLPIQLINPES 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             I +  + +R + +D   F +D    +     + L++ RN  L + Y   S+  SI+ +
Sbjct: 121 FNIINSGAQQRCKVIDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNY-PYSYILSIDKK 179

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           + E    ++  R      L   I E +   N P+++L +  F      +S   + EE   
Sbjct: 180 LCEFAEILDYKRQAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKSLAQVLEE--- 235

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
                   D+  + T  GPH++D+++    K I     S G+QK+++  + LA   + ++
Sbjct: 236 ----SFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQGEIHNS 290

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
                 I L+D+I++ LD      LF  +  + SQ+F+T T+K+  +   +T  ++
Sbjct: 291 ENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSYI 346


>gi|304405886|ref|ZP_07387544.1| DNA replication and repair protein RecF [Paenibacillus
           curdlanolyticus YK9]
 gi|304345129|gb|EFM10965.1| DNA replication and repair protein RecF [Paenibacillus
           curdlanolyticus YK9]
          Length = 367

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 155/353 (43%), Gaps = 22/353 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + +  +RNYA L L  +++  +F+G N  GKTN+LE+I  L+  +  R A   D   
Sbjct: 3   LKRIALRNYRNYAELELDTNSKVNLFIGPNAQGKTNLLESIFALALTKSHRTAK--DKEL 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           IG   +  T A + G       ++KL+       +  +IN +  R + +    L +    
Sbjct: 61  IG---WNGTDAHIHGEADKQYGTVKLDLMLSAQGKKAKINGLEQRRLSDFVGSLNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS- 185
           P    I  G    RRRFLD  +  + P +   +  + +++  RN      Y  + W S  
Sbjct: 118 PEDLEIVKGTPGVRRRFLDMEIGQVQPGYLHTLQQYSKVLVQRNN-----YLKTLWSSGG 172

Query: 186 --------IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
                     AQ+A+ GVKI   R   I+ L     +          +L+++     +F+
Sbjct: 173 DKQGLLEVWNAQLADFGVKIIKKRKYFIHKLQQWAEQIHAGITAGSEQLTVSYKPSFEFE 232

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                L E +  KL   ++ +     TL+GPHR DL+  + +       GS G+Q+   +
Sbjct: 233 DE-SVLFEHFMLKLTQVKEQEIRRGTTLVGPHRDDLMF-FINGKEAQTFGSQGQQRTTAL 290

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            + LA   LI    G  P+LLLD++ + LD +++  L         Q F+T T
Sbjct: 291 SLKLAEIELIREEIGEYPLLLLDDVLSELDRNRQTQLIETFQS-KVQTFITAT 342


>gi|239942667|ref|ZP_04694604.1| recombination protein F [Streptomyces roseosporus NRRL 15998]
 gi|239989126|ref|ZP_04709790.1| recombination protein F [Streptomyces roseosporus NRRL 11379]
 gi|291446128|ref|ZP_06585518.1| recombination protein F [Streptomyces roseosporus NRRL 15998]
 gi|291349075|gb|EFE75979.1| recombination protein F [Streptomyces roseosporus NRRL 15998]
          Length = 376

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 159/358 (44%), Gaps = 22/358 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGITAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R    +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGA---ERAVIRAAVTQGERSQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD +V A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFL 232
              D S     +  +  +G ++   R+++I  L  L  +    V     P + L     +
Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGP-VALEYRSSV 235

Query: 233 --DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D   + +   L E+    L   RK +     TL+GPHR DL++          + S G
Sbjct: 236 GEDVGPESTRDELYEQLMAALAGVRKQEIERGVTLVGPHRDDLLLGLRGMPAK-GYASHG 294

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           E     + + LA   L+  + G  P+L+LD++ A LD  +R  L  +V   G Q+ +T
Sbjct: 295 ESWSYALALRLASYELL-RSEGNEPVLVLDDVFAELDARRRERLAELVAP-GEQVLVT 350


>gi|289628212|ref|ZP_06461166.1| recombination protein F [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330870077|gb|EGH04786.1| recombination protein F [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330987021|gb|EGH85124.1| recombination protein F [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 367

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 166/348 (47%), Gaps = 22/348 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185
             R+  G    RR+FLD  VF ++PR    M+ ++RL   ++ RN  L  G  D++  ++
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAA 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++
Sbjct: 179 WDRELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +  L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A  
Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|330970327|gb|EGH70393.1| recombination protein F [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 367

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 166/348 (47%), Gaps = 22/348 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185
             R+  G    RR+FLD  VF ++PR    MI ++RL   ++ RN  L  G  D++  ++
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MITWQRLQKALKQRNSWLRHGTLDAASQAA 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++
Sbjct: 179 WDRELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +  L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A  
Sbjct: 231 ELSTVLASSIHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|119355860|ref|YP_910504.1| DNA replication and repair protein RecF [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353209|gb|ABL64080.1| DNA replication and repair protein RecF [Chlorobium
           phaeobacteroides DSM 266]
          Length = 365

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 169/355 (47%), Gaps = 37/355 (10%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
           + FRNY  +    +A  T+  G NG GKTNILE I + +  +GF   + +D     S  +
Sbjct: 9   NNFRNYRKMTFEPNAGITLLYGSNGSGKTNILEGIHYCALTKGFTSIADSDCI-FDSSDY 67

Query: 73  FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
           ++  +   G  G +DI +++    ++       N+ + +  + +     I++  P +  I
Sbjct: 68  YALQSTCLGENG-SDIEVRISFSREKGKTLFVNNNEIKKFSNHVGTIPCITFSPPEIS-I 125

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
            SG   ERR+F+D ++   D ++ + ++ + R++  RN LL              AQ++E
Sbjct: 126 VSGSPSERRKFIDNIICQSDKKYLKDLLTYRRVLLQRNALL--------------AQISE 171

Query: 193 LGVKINIARV--EMINALSSLI----MEYVQK--ENFPHI--KLSLT---GFLD----GK 235
               IN+     E ++ L++ I    +E++ K  +NF  +  KLS+    G +     G+
Sbjct: 172 KKSSINMLPYWSENLSVLAASIVFKRLEFLDKFIDNFRDLFKKLSINEEPGIVYRSVLGR 231

Query: 236 FD--QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           +D  ++   L   Y +K  D  + + +  +T  GPHR DL     DK I   + S G+ +
Sbjct: 232 YDNIRNIDELAALYYRKYDDNLRYELLRSQTSCGPHRDDLEFYINDKEIK-KYASQGQLR 290

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
             L+G+ LA    + +TT   PI LLD+I + LD  +   +  I+  +G  I  +
Sbjct: 291 TFLIGLKLAVYDYLFDTTHEKPICLLDDIFSELDTQRTENILSILQTLGQSIITS 345


>gi|30260199|ref|NP_842576.1| recombination protein F [Bacillus anthracis str. Ames]
 gi|47525258|ref|YP_016607.1| recombination protein F [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183043|ref|YP_026295.1| recombination protein F [Bacillus anthracis str. Sterne]
 gi|65317472|ref|ZP_00390431.1| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Bacillus
           anthracis str. A2012]
 gi|165873033|ref|ZP_02217654.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0488]
 gi|167635057|ref|ZP_02393374.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0442]
 gi|167641747|ref|ZP_02399990.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0193]
 gi|170689465|ref|ZP_02880655.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0465]
 gi|170707533|ref|ZP_02897986.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0389]
 gi|177655288|ref|ZP_02936842.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0174]
 gi|190569289|ref|ZP_03022183.1| DNA replication and repair protein RecF [Bacillus anthracis
           Tsiankovskii-I]
 gi|218901210|ref|YP_002449044.1| DNA replication and repair protein RecF [Bacillus cereus AH820]
 gi|227812682|ref|YP_002812691.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           CDC 684]
 gi|228949214|ref|ZP_04111482.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229602868|ref|YP_002864661.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0248]
 gi|254687067|ref|ZP_05150925.1| recombination protein F [Bacillus anthracis str. CNEVA-9066]
 gi|254742124|ref|ZP_05199811.1| recombination protein F [Bacillus anthracis str. Kruger B]
 gi|254755966|ref|ZP_05207998.1| recombination protein F [Bacillus anthracis str. Vollum]
 gi|254761354|ref|ZP_05213376.1| recombination protein F [Bacillus anthracis str. Australia 94]
 gi|51316217|sp|Q6I535|RECF_BACAN RecName: Full=DNA replication and repair protein recF
 gi|226737768|sp|B7JJC0|RECF_BACC0 RecName: Full=DNA replication and repair protein recF
 gi|254790460|sp|C3P8P8|RECF_BACAA RecName: Full=DNA replication and repair protein recF
 gi|254790461|sp|C3LIC5|RECF_BACAC RecName: Full=DNA replication and repair protein recF
 gi|30253520|gb|AAP24062.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           Ames]
 gi|47500406|gb|AAT29082.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49176970|gb|AAT52346.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           Sterne]
 gi|164711245|gb|EDR16801.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0488]
 gi|167510301|gb|EDR85704.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0193]
 gi|167529531|gb|EDR92281.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0442]
 gi|170127529|gb|EDS96403.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0389]
 gi|170666567|gb|EDT17340.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0465]
 gi|172080215|gb|EDT65307.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0174]
 gi|190559596|gb|EDV13587.1| DNA replication and repair protein RecF [Bacillus anthracis
           Tsiankovskii-I]
 gi|218536673|gb|ACK89071.1| DNA replication and repair protein RecF [Bacillus cereus AH820]
 gi|227005823|gb|ACP15566.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           CDC 684]
 gi|228810497|gb|EEM56850.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229267276|gb|ACQ48913.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0248]
          Length = 375

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGTKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|52078495|ref|YP_077286.1| recombination protein F [Bacillus licheniformis ATCC 14580]
 gi|52783859|ref|YP_089688.1| recombination protein F [Bacillus licheniformis ATCC 14580]
 gi|81691262|sp|Q65PL9|RECF_BACLD RecName: Full=DNA replication and repair protein recF
 gi|52001706|gb|AAU21648.1| DNA repair RecF [Bacillus licheniformis ATCC 14580]
 gi|52346361|gb|AAU38995.1| RecF [Bacillus licheniformis ATCC 14580]
          Length = 370

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 173/389 (44%), Gaps = 52/389 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +S +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   IQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   +A++EG     + S+ ++    +  +  ++N +  + + +    +      
Sbjct: 63  -----WDEDYAKIEGRVIKKNGSVPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RRRFLD  +  + P +   +  +++++  RN  L    T    D + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDQTM 177

Query: 183 CSSIEAQMAELGVKINIARVEMIN---------------ALSSLIMEYVQKENFPHIKLS 227
              +  Q+ E   K+ + R++ ++                L  L ++Y       H  L 
Sbjct: 178 LDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKY-------HTSLH 230

Query: 228 LTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           ++   D       + ++F  L+++  ++             +L GPHR D++  Y +   
Sbjct: 231 VSDSPDLSKMINSYQETFSKLRDKEIERGV-----------SLSGPHRDDVLF-YVNGRD 278

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              +GS G+Q+   + + LA   LI    G  PILLLD++ + LD+ +++ L   +    
Sbjct: 279 VQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-R 337

Query: 343 SQIFMTGTDKSVFD--SLNETAKFMRISN 369
            Q F+T T     D  +LNE A+  R+ N
Sbjct: 338 VQTFVTTTSVDGIDHKTLNE-AEIFRVEN 365


>gi|145221418|ref|YP_001132096.1| recombination protein F [Mycobacterium gilvum PYR-GCK]
 gi|189039630|sp|A4T4U1|RECF_MYCGI RecName: Full=DNA replication and repair protein recF
 gi|145213904|gb|ABP43308.1| DNA replication and repair protein RecF [Mycobacterium gilvum
           PYR-GCK]
          Length = 389

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 31/364 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +++FR+++ + L      T+FVG NG GKTN++EA+ + +     R AS A + R
Sbjct: 3   VRHLALTDFRSWSRVELELSPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    EG E    +++ L+    R+ +  ++N   +R   E+   LR    
Sbjct: 63  AGAERAVVSTIIVNEGRE----LAVDLDITSGRANKA-RLNRSPVRSAREILGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----------E 175
            P    +  G   +RRR+LD +     PR      D+++++R R  LL            
Sbjct: 118 APEDLALVRGDPGDRRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASSARFRGDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
           G  ++      +  +A  G ++  ARV++++ L+  + E   +   P  + +   +  G 
Sbjct: 178 GALET--LDVWDGHLAAHGAQLIAARVDLVHELAPEV-EKAYQLLAPASRPATVRYRSGV 234

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAH 286
                 A       ++F+   +D++SRR          L+GPHR DL +   D+      
Sbjct: 235 EVVEAEAAAGNSDPEVFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQPAK-GF 293

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE   + + + LA   L+    G  P+LLLD++ A LD  +R AL ++      Q+ 
Sbjct: 294 ASHGESWSMALSLRLAAYELL-RADGSDPVLLLDDVFAELDSARRQALAQVAAS-AEQVL 351

Query: 347 MTGT 350
           +T  
Sbjct: 352 VTAA 355


>gi|226362898|ref|YP_002780678.1| recombination protein F [Rhodococcus opacus B4]
 gi|254790485|sp|C1B7T0|RECF_RHOOB RecName: Full=DNA replication and repair protein recF
 gi|226241385|dbj|BAH51733.1| DNA replication and repair protein RecF [Rhodococcus opacus B4]
          Length = 410

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 174/388 (44%), Gaps = 44/388 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++ +FR++ +L L      T+FVG NG GKTN+LEA+ +LS     R +S A + R
Sbjct: 3   VRALSLRDFRSWDALGLNLRPGCTVFVGPNGHGKTNVLEALGYLSTLSSHRVSSDAPLIR 62

Query: 67  IGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+   F+    V  G E    +++ LE  + +S R  +IN    R   E+   L+    
Sbjct: 63  TGTAQAFAGATVVNTGRE----LTVDLELNEGKSNRA-RINQSPTRRPREILGILQTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   +RRR+LD ++ +  PR      D+ER++R R+ LL            
Sbjct: 118 APEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYERVLRQRSALLKTAGGALRRSSR 177

Query: 176 --GYFDSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFP-- 222
             G       S++      +  +A  G ++   R+ +++ L+  + E  Q    E+ P  
Sbjct: 178 GGGRPSEDGASALATLEVWDGHLAAHGAQLLAGRLHLVHDLAPHLAESYQSLAPESRPAS 237

Query: 223 -HIKLSLTGFLDGKFDQSFCA--------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
              + SL   L  +F     A        L+E + ++L   R  +      L+GPHR DL
Sbjct: 238 IRYRSSLGSSLPPEFTAPARAPEAGDIAFLEERFLQELSVMRSKEIERGVCLVGPHRDDL 297

Query: 274 IVDYCDKAITIAHG--STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
            +   D   T A G  S GE     + + LA   L+    G  P+L+LD++ A LD  +R
Sbjct: 298 ELHLGD---TPAKGFASHGESWSFALSLRLAGFALL-RADGSDPVLMLDDVFAELDRKRR 353

Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            AL ++  D    +      + V + L+
Sbjct: 354 RALAKVALDAEQVLITAAVPEDVPEELD 381


>gi|325954682|ref|YP_004238342.1| DNA replication and repair protein recF [Weeksella virosa DSM
           16922]
 gi|323437300|gb|ADX67764.1| DNA replication and repair protein recF [Weeksella virosa DSM
           16922]
          Length = 359

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 167/380 (43%), Gaps = 42/380 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L   +F+N+      F  +    VG NG+GKTN+L+AI +L+  + +   +++D   
Sbjct: 3   LRLLKARQFKNFTESDFEFSPKINAIVGPNGLGKTNLLDAIHYLALSKSY--LNHSDAMN 60

Query: 67  IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           I    F   +  +EG       D  I    R  +S +  + +    R+ D + +   +  
Sbjct: 61  I---QFDKDYFLLEGEFYRNHVDEKISCLVRKGQSKQLKRNSKQYDRLSDHIGQ-FPVVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180
           + P    + +  S  RR+FLD ++   D  + + ++ + +++  RN LL        FD+
Sbjct: 117 ISPYDSDLINEGSEVRRKFLDNIISQSDKAYLQHLLRYNKVLSQRNALLKYFAANQTFDA 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQ 238
                 + ++ ELG KI   R   +   + +   Y     E    +K+     L+   + 
Sbjct: 177 DTLGIYDKELIELGEKIFAKRKTFVEIFAKVFKSYYSSISEQREPVKIEYISQLN---EH 233

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH------GSTGEQ 292
           SF  L + +  K       D  ++ +  G H+ DL       A TI H      GS G+Q
Sbjct: 234 SFDTLLQNHLPK-------DRFAQHSTAGIHKDDL-------AFTIFHHPVKKFGSQGQQ 279

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMT--- 348
           K  L+ + LA   +I       PILLLD+I   LDE +   L R+V +    QIF+T   
Sbjct: 280 KSYLIALKLAQLEVIKQVLNLTPILLLDDIFDKLDEQRVTQLIRLVNEARFGQIFVTDTH 339

Query: 349 -GTDKSVFDSLNETAKFMRI 367
            G  + +   +NE +K +RI
Sbjct: 340 PGRTEEIVKRINEESKIIRI 359


>gi|315441700|ref|YP_004074579.1| DNA replication and repair protein RecF [Mycobacterium sp. Spyr1]
 gi|315260003|gb|ADT96744.1| DNA replication and repair protein RecF [Mycobacterium sp. Spyr1]
          Length = 389

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 166/364 (45%), Gaps = 31/364 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +++FR+++ + L      T+FVG NG GKTN++EA+ + +     R AS A + R
Sbjct: 3   VRHLALTDFRSWSRVELELSPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    EG E    +++ L+    R+ +  ++N   +R   E+   LR    
Sbjct: 63  AGAERAVVSTIIVNEGRE----LAVDLDITSGRANKA-RLNRSPVRSAREILGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----------E 175
            P    +  G   +RRR+LD +     PR      D+++++R R  LL            
Sbjct: 118 APEDLALVRGDPGDRRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASSARFRGDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
           G  ++      +  +A  G ++  ARV++++ L+  + E   +   P  + +   +  G 
Sbjct: 178 GALET--LDVWDGHLAAHGAQLIAARVDLVHELAPEV-EKAYQLLAPASRPATVRYRSGV 234

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAH 286
                 A       ++F+   +D++SRR          L+GPHR DL +   D+      
Sbjct: 235 EVVEAEAAAGNSDPEVFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQPAK-GF 293

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE   + + + LA   L+    G  P+LLLD++ A LD  +R AL ++      Q+ 
Sbjct: 294 ASHGESWSMALSLRLAAYELL-RADGSDPVLLLDDVFAELDSARRQALAQVAAS-AEQVL 351

Query: 347 MTGT 350
           +T  
Sbjct: 352 VTAA 355


>gi|330898606|gb|EGH30025.1| recombination protein F [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 367

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 16/345 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++E +
Sbjct: 182 ELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
             L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A   L+
Sbjct: 234 TVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|330447267|ref|ZP_08310917.1| ssDNA and dsDNA binding, ATP binding [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491458|dbj|GAA05414.1| ssDNA and dsDNA binding, ATP binding [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 360

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 164/363 (45%), Gaps = 17/363 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN  +  L         VG NG GKT++LEAI +L  GR FR    + V R   
Sbjct: 6   LMVHDFRNIEACDLALATGFNFLVGANGSGKTSVLEAIHYLGHGRSFRSHLTSRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              F    RV   +    + I L  + D +   ++I     + V +L + L +  + P  
Sbjct: 66  SELF-IHGRVVDNQTQLMLPIGLNKKRDGTTE-VKIAGEPNQKVAQLAQILPLQLITPEG 123

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187
             +  G    RR F+D  VF ++P+        +RL + RN LL     Y + S+    +
Sbjct: 124 FDLLIGGPKYRRAFIDWGVFHVEPKFYHAWSRLKRLTKQRNALLKTARSYRELSYW---D 180

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            ++A L  +I++ R + I+A+     E  Q    P  ++ L G+  G   ++       Y
Sbjct: 181 QELALLAEQISVWRQDYISAVKEKAAEIFQV-FLPEYEIQL-GYYRGWEKET------PY 232

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
           A+ L    + D     T  GPH++DL +      +     S G+ K+++  + LA    +
Sbjct: 233 AELLKRNFERDCQLGYTASGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQGLHL 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366
           +  TG   I L+D+ ++ LD  +R  L + + +  +Q+F++  +D  V D L+E  K   
Sbjct: 292 TEATGKQCIYLIDDFASELDSHRRALLAQRLKETNAQVFISAISDDQVADMLDENGKLFH 351

Query: 367 ISN 369
           + +
Sbjct: 352 VEH 354


>gi|229015409|ref|ZP_04172415.1| DNA replication and repair protein recF [Bacillus cereus AH1273]
 gi|229026933|ref|ZP_04183256.1| DNA replication and repair protein recF [Bacillus cereus AH1272]
 gi|228734391|gb|EEL85062.1| DNA replication and repair protein recF [Bacillus cereus AH1272]
 gi|228745888|gb|EEL95884.1| DNA replication and repair protein recF [Bacillus cereus AH1273]
          Length = 375

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 169/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ITEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   + +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDYGQIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     LD   
Sbjct: 178 LDVFTLQLIEHGAKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSLDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + + N    C
Sbjct: 352 HETLKE-AKTIHVMNGTVDC 370


>gi|257789782|ref|YP_003180388.1| DNA replication and repair protein RecF [Eggerthella lenta DSM
           2243]
 gi|317489245|ref|ZP_07947762.1| DNA replication and repair protein RecF [Eggerthella sp. 1_3_56FAA]
 gi|325832293|ref|ZP_08165292.1| DNA replication and repair protein RecF [Eggerthella sp. HGA1]
 gi|257473679|gb|ACV53999.1| DNA replication and repair protein RecF [Eggerthella lenta DSM
           2243]
 gi|316911646|gb|EFV33238.1| DNA replication and repair protein RecF [Eggerthella sp. 1_3_56FAA]
 gi|325486129|gb|EGC88583.1| DNA replication and repair protein RecF [Eggerthella sp. HGA1]
          Length = 420

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 169/374 (45%), Gaps = 51/374 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I FLN   FR+Y +  L      T+ VG N  GKTN++E I  L+    FR A    + R
Sbjct: 8   ISFLN---FRSYEAFDLDGIGPLTVLVGPNAAGKTNVVEGIGLLTAQSSFRHAPVDQLVR 64

Query: 67  IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+P     FAR+     +G   + + ++  + +    L  N    R  D       +  
Sbjct: 65  AGAP-----FARLTADVTDGSRQLELAVQMAEGKKKHLL--NGKPKRTAD-------LKG 110

Query: 125 LVPSMD------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           LVPS+        +  G    RR  LD +   +   H     D+E+++R +NRLL +   
Sbjct: 111 LVPSVTFTPDDLELAKGAMSVRRAALDALGSQLSANHYLIRRDYEKVLRHKNRLLKD-EA 169

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD----- 233
            ++   ++   +   G +++  R  +   L++ +  Y  +    H +L   GF+      
Sbjct: 170 PAALVGAMNETLVTCGAQLSCYRAALFEKLAASMASYYAEITDGHERLD-AGFVPSWEEH 228

Query: 234 ----------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
                     G+ D++  AL +  A++  + R    + +R L+GPH +D I  + D    
Sbjct: 229 DPLSFATRTFGR-DEAREALADALARRGGEER----VRKRALVGPH-ADRIEFFIDGKNA 282

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIG 342
              GS G+Q+ V++   LA A LI +     P+LLLD++ + LD  +R AL   ++ DI 
Sbjct: 283 ALFGSQGQQRSVVLAFKLAEATLIQDILRQKPVLLLDDVMSELDAARRRALVAFISGDI- 341

Query: 343 SQIFMTGTDKSVFD 356
            Q F+T T+ + FD
Sbjct: 342 -QTFITTTNLAYFD 354


>gi|127510938|ref|YP_001092135.1| DNA replication and repair protein RecF [Shewanella loihica PV-4]
 gi|166221864|sp|A3Q8S8|RECF_SHELP RecName: Full=DNA replication and repair protein recF
 gi|126636233|gb|ABO21876.1| DNA replication and repair protein RecF [Shewanella loihica PV-4]
          Length = 360

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 164/355 (46%), Gaps = 23/355 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  FRN AS +L       +  G NG GKT+ILEAI FL  GR FR      V +   
Sbjct: 6   LHIDSFRNIASAQLQLGDGLNLIYGQNGSGKTSILEAIFFLGMGRSFRSHLSQRVIQ-ND 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA++E  E    I ++     +  V+   +N   ++ +  L + L I  + P S
Sbjct: 65  QDKLTLFAQLEQGEQETKIGLRRYRSGETEVK---MNGEKVKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCSSI 186
              +F G    RR+F+D   F  D        +  R+++ RN++L     Y    +    
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHTDKSFYTAWANVRRILKHRNQMLKSETPYQQIQFWDKE 180

Query: 187 EAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             + AE+  +I    V  +N  L  +I E++ + +   +K+S T   D K D     L+ 
Sbjct: 181 LVRYAEIVTEIRKRYVGSLNERLKGIIEEFLPQVD---VKVSFTRGWDSKTDYQ-TLLQA 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           +Y + L  G         T  GPH++DL +      +  A  S G+ K+++  + +A  +
Sbjct: 237 QYPRDLAAG--------HTASGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQGK 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLN 359
           L+        I L+D++ + LD   R  L + ++D G+Q+F+T  +  ++ DSLN
Sbjct: 288 LLKQQIDKNSIYLVDDLPSELDARHRQLLLQQLSDTGAQVFVTAIEPAAIMDSLN 342


>gi|330937294|gb|EGH41305.1| recombination protein F [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330976404|gb|EGH76461.1| recombination protein F [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 367

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 16/345 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++E +
Sbjct: 182 ELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
             L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A   L+
Sbjct: 234 TVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|77456231|ref|YP_345736.1| recombination protein F [Pseudomonas fluorescens Pf0-1]
 gi|97180883|sp|Q3KKF9|RECF_PSEPF RecName: Full=DNA replication and repair protein recF
 gi|77380234|gb|ABA71747.1| DNA replication and repair protein RecF [Pseudomonas fluorescens
           Pf0-1]
          Length = 367

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 155/348 (44%), Gaps = 16/348 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   +      +  I  G NG GKT++LEAI  L   R FR      V +   
Sbjct: 6   VSVTAVRNLHPVTFSPSPRINILYGANGSGKTSVLEAIHLLGLARSFRSTRLLPVIQYEQ 65

Query: 70  PSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            +  + F +VE  EG  + + I   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  LAC-TVFGQVELAEGGHSALGI---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D+   +  + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAVSQAVWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++ +   +I+  R   I AL   + E    E      L+L+ +     D+   A+     
Sbjct: 182 ELCQASAEIDEYRRAYIKALKP-VFEQTLSELVELEGLTLSYYRGWDKDRELSAV----- 235

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
             L    + D     T  GP R+DL +      A  I   S G+QK+V+  + +A   L+
Sbjct: 236 --LAGSVQRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           S       I L+D++ + LDE  R AL R++ D+  Q+F+T  D  + 
Sbjct: 292 SQARRGQCIYLVDDLPSELDESHRRALCRLLEDLRCQVFITCVDHELL 339


>gi|269837339|ref|YP_003319567.1| DNA replication and repair protein RecF [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786602|gb|ACZ38745.1| DNA replication and repair protein RecF [Sphaerobacter thermophilus
           DSM 20745]
          Length = 412

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 167/378 (44%), Gaps = 32/378 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS------YAD 63
           L + EFR+Y  L +   A      G N  GKT++LEA+  L+  R  R +S      +  
Sbjct: 6   LQLEEFRSYRRLSVDLPAAGLRIFGQNAGGKTSLLEAVYLLATMRSPRASSERETIHWES 65

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS---VRCLQINDVVIRVVDELNKHL 120
              +G P +    AR+       D+ + L   ++R     + ++++    R +D +   L
Sbjct: 66  GVELGLPPYARVAARIRHNRHETDVEVVLTVDEERGGALRKRVKLDGRPRRAIDAVGA-L 124

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFD 179
           ++    P    +  G    RRR+LD  +  ID  + + +  + RL+  RN LL E G   
Sbjct: 125 KVVLFTPDDLNLILGSPSVRRRYLDITLSQIDSTYLQALGQYGRLLEQRNSLLKELGGRR 184

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY--VQKENFPHIK------------ 225
                +IE QMA    +I      ++      + E   V  E F  +             
Sbjct: 185 PRDERAIEDQMAYWDAEIVTRGAYLLAQRLRYVHEVDRVAAEEFRALARTEDRLGLRYST 244

Query: 226 -LSLTGFLDGKFDQSFCALKEEYAKKLFDGR----KMDSMSRR-TLIGPHRSDLIVDYCD 279
            ++L   L  +  +S  A  + +  +  +      + D + R  TL+GPHR DL      
Sbjct: 245 TVTLPDALRERVVESTLADAQAFVARALESDLHRLRPDELRRGVTLVGPHRDDLHFLLGG 304

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
             ++ A+GS G+Q++ +V   LA  R +  +TG  P+LLLD++ + LD + +  L  ++ 
Sbjct: 305 HELS-AYGSRGQQRLAVVATKLAELRQVVASTGERPVLLLDDVLSELDPEHQERLLAVLG 363

Query: 340 DIGSQIFMTGTDKSVFDS 357
             G QI +T TD+++ D 
Sbjct: 364 SAGCQILITATDRALLDQ 381


>gi|312958105|ref|ZP_07772628.1| DNA replication and repair protein recF [Pseudomonas fluorescens
           WH6]
 gi|311287536|gb|EFQ66094.1| DNA replication and repair protein recF [Pseudomonas fluorescens
           WH6]
          Length = 367

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 157/348 (45%), Gaps = 16/348 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   +      +  I  G NG GKT++LEAI  L   R FR A    V +   
Sbjct: 6   VSVTAVRNLHPVTFSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPVIQYEQ 65

Query: 70  PSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            +  + F +VE  EG  +++ I   +RD      ++I+    R   +L + L +  + P 
Sbjct: 66  LAA-TVFGQVELAEGGHSNLGI---SRDRGGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D++  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++     +I+  R   I AL   + E    E      L+L+ +     D+   A+     
Sbjct: 182 ELCLASDEIDEYRRAYIKALKP-VFEQTLSELLDLEGLTLSYYRGWDKDRELSAV----- 235

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
             L    + D     T  GP R+DL +      A  I   S G+QK+V+  + +A   L+
Sbjct: 236 --LATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           S       I L+D++ + LDE  R AL R++ D+  Q+F+T  D  + 
Sbjct: 292 SQARRGQCIYLVDDLPSELDEQHRRALCRLLEDLRCQVFITCVDHELL 339


>gi|229094603|ref|ZP_04225670.1| DNA replication and repair protein recF [Bacillus cereus Rock3-42]
 gi|229159053|ref|ZP_04287109.1| DNA replication and repair protein recF [Bacillus cereus ATCC 4342]
 gi|300118806|ref|ZP_07056526.1| recombination protein F [Bacillus cereus SJ1]
 gi|228624472|gb|EEK81243.1| DNA replication and repair protein recF [Bacillus cereus ATCC 4342]
 gi|228688850|gb|EEL42681.1| DNA replication and repair protein recF [Bacillus cereus Rock3-42]
 gi|298723774|gb|EFI64496.1| recombination protein F [Bacillus cereus SJ1]
          Length = 375

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TL+GPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|254735167|ref|ZP_05192877.1| recombination protein F [Bacillus anthracis str. Western North
           America USA6153]
          Length = 375

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGTKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KLQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|52145206|ref|YP_081623.1| recombination protein F [Bacillus cereus E33L]
 gi|81689896|sp|Q63HG4|RECF_BACCZ RecName: Full=DNA replication and repair protein recF
 gi|51978675|gb|AAU20225.1| DNA replication and repair protein [Bacillus cereus E33L]
          Length = 375

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TL+GPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|251777974|ref|ZP_04820894.1| DNA replication and repair protein RecF [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082289|gb|EES48179.1| DNA replication and repair protein RecF [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 361

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 172/367 (46%), Gaps = 13/367 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + ++ +RNY +L L       +F+GDN  GKTN+LE+I + +  +  R +   D+  
Sbjct: 3   IKAIMLANYRNYNNLELNLSEGVNVFIGDNAQGKTNVLESIYYCAFAKSHRTSRDKDLIN 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              + ++ S     + ++   DI I    RD +  + +++N + I  + EL     +   
Sbjct: 63  WKENEAYISLLVGKKRLDKRIDIKI---LRDGK--KAIKVNSIKINKIGELFGTFNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   +I       RR+FLD  +  I  ++   ++ + +++  RN +L    F+      
Sbjct: 118 SPEDLKIIKESPGIRRKFLDMELCQISKKYYFNLVQYNKILNERNVILRSRDFNKDILEV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCALK 244
            + Q+ E    I   R+E I+ ++    +++  E     +  +  +  G KF ++F   K
Sbjct: 178 YDLQLVECADYIVKERLEYIDKINYY-GKFIHNEITSGKEDIVFKYDSGVKFKENF---K 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             + +KL +    D     T +GPHR D  V   +       GS G+Q+  ++ +  +  
Sbjct: 234 YVFLEKLRNNLLKDREQGITSVGPHRDDFNV-LINNIDVKKFGSQGQQRTAVLTMKFSSL 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           ++I   T   PILLLD++ + LD +++  +   ++DI + I  TG +  + D L++ +K 
Sbjct: 293 KIIKEITKEYPILLLDDVLSELDINRKRYVLSTLSDIQTIITCTGIN-DLEDYLDDKSKV 351

Query: 365 MRISNHQ 371
             + N +
Sbjct: 352 FNVCNGE 358


>gi|323486746|ref|ZP_08092065.1| DNA replication and repair protein recF [Clostridium symbiosum
           WAL-14163]
 gi|323399885|gb|EGA92264.1| DNA replication and repair protein recF [Clostridium symbiosum
           WAL-14163]
          Length = 360

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 156/352 (44%), Gaps = 24/352 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  +RNY  L + FD    +  GDN  GKTNILE++   +  +  R +   ++  
Sbjct: 3   IESLELKNYRNYKELHINFDPGTNVLYGDNAQGKTNILESVYVCATTKSHRGSKDREIIE 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   S      R + +    D+ +K         + + IN + I    EL   + + + 
Sbjct: 63  FGEEESHIKMNIRKDDVPYRIDMHLK-----KNKTKGVAINGIAIHKASELFGVVNVVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    +      ERRRF+D  +  ++  +   ++ + +++  RN+LL E  F   +   
Sbjct: 118 SPEDLNLIKNGPAERRRFVDLELCQLNRLYVHSLVQYNKIILQRNKLLKEIAFRPEYEEM 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQS 239
           +   + Q+   G ++   R + I+ ++ +I +         I  +L+G    L+ +++ +
Sbjct: 178 LDIYDMQLVSYGRELIHYRNDFIDQMNGIIRD---------IHFNLSGGKEELEIRYEPN 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             A  +   K L   R  D   + TL GPHR D I  Y +       GS G+Q+   + +
Sbjct: 229 TEA--DVLEKALKKSRMQDLRQKTTLTGPHRDD-ISFYVNNIDIRKFGSQGQQRTAALSL 285

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            LA   L+       PILLLD++ + LD  ++  L   ++ I + I  TG D
Sbjct: 286 KLAEIELVKKIVKDYPILLLDDVLSELDSGRQEHLLSGISHIQTVITCTGLD 337


>gi|254724150|ref|ZP_05185935.1| recombination protein F [Bacillus anthracis str. A1055]
          Length = 375

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGTKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFLGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|257062757|ref|YP_003142429.1| recF protein [Slackia heliotrinireducens DSM 20476]
 gi|256790410|gb|ACV21080.1| recF protein [Slackia heliotrinireducens DSM 20476]
          Length = 376

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 170/373 (45%), Gaps = 36/373 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           I+I+   + +FRNY + RL      TIF+G NG+GKTN+LEAI  L+    FR A   ++
Sbjct: 3   IRIESFQLRDFRNYETFRLDGIGPLTIFIGPNGIGKTNVLEAIQLLTATPSFRHAHTQEL 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  + +   +  +   +  + D+ I L      + +   IN       D +   L    
Sbjct: 63  IRWDAEN---SLLKAHMVSDVRDLEIGLAI--GPTGKTYSINGKKHSGQD-VQTTLPSVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RR  LD +   +   HR    D+ +LM+ +N LL +G     +  
Sbjct: 117 FSPDDMLLLKGSQSYRRDELDAVGCQLSKNHRILKRDYLKLMKHKNALLKDG-VTGPYIE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSS---------------LIMEYVQKENFPHIKLSLT 229
           S+   +     ++ + RV +   +++               L M Y+   ++  +++S  
Sbjct: 176 SVNDLIVPTATQLYLYRVALFKNIAARMAEVYATISAGGERLEMRYI--PSWHPMEVSKD 233

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDG---RKMDSMSR-RTLIGPHRSDLIVDYCDKAITIA 285
              D  FD      K+E + +L +    R ++   R R L+GPH +D I+ Y +      
Sbjct: 234 VIEDVPFDLG----KQEISTRLEEALHQRAVEEYERGRGLVGPH-ADKIMFYLNGRNASL 288

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQ 344
           +GS G+Q+ + +   +A   LI    G  P+LLLD++++ LD  +R AL  ++  DI  Q
Sbjct: 289 YGSQGQQRSISLAWKIAEVGLIEEILGQKPVLLLDDVASELDAARRGALVELLHRDI--Q 346

Query: 345 IFMTGTDKSVFDS 357
            F+T TD   F+S
Sbjct: 347 TFITTTDIGTFES 359


>gi|320321690|gb|EFW77789.1| recombination protein F [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331108|gb|EFW87079.1| recombination protein F [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 367

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 166/348 (47%), Gaps = 22/348 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185
             R+  G    RR+FLD  VF ++PR    M+ ++RL   ++ RN  L  G  D++  ++
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAA 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++
Sbjct: 179 WDRELCYASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +  L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A  
Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|330881906|gb|EGH16055.1| recombination protein F [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 367

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 166/348 (47%), Gaps = 22/348 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPPPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185
             R+  G    RR+FLD  VF ++PR    M+ ++RL   ++ RN  L  G  D++  ++
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAA 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++
Sbjct: 179 WDRELCYASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +  L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A  
Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|222528061|ref|YP_002571943.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222454908|gb|ACM59170.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 353

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 156/349 (44%), Gaps = 23/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK + +  FR Y      F  +  + VG+N  GKT++LEA+ F   G+ F+     D+
Sbjct: 1   MKIKSIYVENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCMCGKSFKS---RDI 57

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123
             I   SF   + ++E +  + D    +    D+++ + + IND  I+ + EL    +  
Sbjct: 58  DAINFDSF---YFKLEMLAEVGDTEYNVFCYVDKALDKRIMINDKKIKKLSELISTFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    +       RRRFLD  V  + P   +   ++ R +  RN  L + Y      
Sbjct: 115 FFEPDATELIKHQPKLRRRFLDMEVTKLYPYMTKVYSEYHRALLSRNAFL-KSYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+++LG  I   R E+IN LS      ++ +    +       L+ K+  S  A 
Sbjct: 174 DVYDMQISQLGFLIFQKRQEVINKLS------IEAQKIFSLVFENKSMLELKYMPSIAAS 227

Query: 244 KE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            E EY K++    + D     T  G HR D  +   DK   I   S G+ K+  V + LA
Sbjct: 228 TEKEYYKEIKKNIEKDLSLGYTTKGVHRDDFEI-LIDKKPAINFASEGQIKLAAVSVVLA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + L S      P+L+LD++ + LD  KR  L + ++   S  F+T  +
Sbjct: 287 TSLLYSE-----PVLILDDVFSELDSFKRKNLVKFISQYQS--FVTSAE 328


>gi|254447440|ref|ZP_05060906.1| DNA replication, recombinaison and repair protein [gamma
           proteobacterium HTCC5015]
 gi|198262783|gb|EDY87062.1| DNA replication, recombinaison and repair protein [gamma
           proteobacterium HTCC5015]
          Length = 357

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 160/351 (45%), Gaps = 30/351 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I   R  A++ +       +  G N  GKT++LEAI  LS GR FR + + + 
Sbjct: 1   MSLQQLTIQNIRRLATVEMALSPSLNVIYGLNASGKTSLLEAIHLLSTGRSFRTSRFTEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +       A V   +G   I ++   R+      +++    ++ V EL + L    
Sbjct: 61  LSHEAKQAV-VAATVHQPDGACRIGVQRSARE----WLMKVGGERVQRVSELARWLPTQV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSW 182
           + P    + +     RR+FL+  VF ++ R     + ++R ++ RN  L +     D +W
Sbjct: 116 IHPDSHFLLTAGPSYRRQFLNWGVFHVEHRFYPAWVRYQRALKQRNSALRQKDARMDGAW 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFD 237
               +++++     I+  R E +  L+ ++  +V     Q+E    +++      D +  
Sbjct: 176 ----DSELSRAASFIHELREEYVADLNRILPRFVAAMMGQQE----VQMVYQPGWDSE-- 225

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                  +  A  L D R+ D     T  GPHR+DL     +     A  S G+QK+++ 
Sbjct: 226 -------QTLATVLRDYREKDRYRGHTQQGPHRADLSFK-VNGYKAQAEISRGQQKMLVS 277

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            + LA A L    +G + ++++D++ A LDE  RNAL  ++ D+ SQ+ +T
Sbjct: 278 ALRLAQAALYQEQSGQSCLIMMDDLPAELDEKHRNALMGLLADMQSQVLVT 328


>gi|323694888|ref|ZP_08109038.1| DNA replication and repair protein recF [Clostridium symbiosum
           WAL-14673]
 gi|323500978|gb|EGB16890.1| DNA replication and repair protein recF [Clostridium symbiosum
           WAL-14673]
          Length = 360

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 156/352 (44%), Gaps = 24/352 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  +RNY  L + FD    +  GDN  GKTNILE++   +  +  R +   ++  
Sbjct: 3   IESLELKNYRNYKELHINFDPGTNVLYGDNAQGKTNILESVYVCATTKSHRGSKDREIIE 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   S      R + +    D+ +K         + + IN + I    EL   + + + 
Sbjct: 63  FGEEESHIKMNIRKDDVPYRIDMHLK-----KNKTKGVAINGIAIHKASELFGVVNVVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    +      ERRRF+D  +  ++  +   ++ + +++  RN+LL E  F   +   
Sbjct: 118 SPEDLNLIKNGPAERRRFVDLELCQLNRLYVHSLVQYNKIILQRNKLLKEIAFRPEYEEM 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQS 239
           +   + Q+   G ++   R + I+ ++ +I          +I  +L+G    L+ +++ +
Sbjct: 178 LDIYDMQLVSYGRELIHYRNDFIDQMNGIIR---------NIHFNLSGGKEELEIRYEPN 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             A  +   K L   R  D   + TL GPHR D I  Y +       GS G+Q+   + +
Sbjct: 229 TEA--DVLEKALKKSRMQDLRQKTTLTGPHRDD-ISFYVNNIDIRKFGSQGQQRTAALSL 285

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            LA   L+       PILLLD++ + LD  ++  L   ++ I + I  TG D
Sbjct: 286 KLAEIELVKKIVKDYPILLLDDVLSELDSGRQEHLLSGISHIQTVITCTGLD 337


>gi|315644303|ref|ZP_07897473.1| DNA replication and repair protein RecF [Paenibacillus vortex V453]
 gi|315280678|gb|EFU43967.1| DNA replication and repair protein RecF [Paenibacillus vortex V453]
          Length = 370

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 157/360 (43%), Gaps = 18/360 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++  +RNY  L+L       + +G N  GKTN++EA+  L+  +  R +   D   
Sbjct: 3   VKNVSLQHYRNYEKLQLEAFGDVNLIIGRNAQGKTNLMEALFVLALTKSHRTSK--DREL 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           IG   F  + A V         ++KLE    +  +  +IN +  R + +    L +    
Sbjct: 61  IG---FEQSHAHVSAEIDRKYGALKLELSLSQQGKKAKINGLEQRKLSDFIGSLNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P    I  G    RRRFLD  +  + P +   +  +++++  RN LL +    G  + + 
Sbjct: 118 PEDLEIVKGTPGVRRRFLDMEIGQVAPSYLFHLQQYQKVLVQRNNLLKQLWGKGSAEQAM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLS-LTGFLDGKFDQS 239
                +Q+AE GVKI   R + I  L        Q        + L  L  F D + ++ 
Sbjct: 178 LDIWNSQLAEHGVKIVKKRKQFIKKLQKWAESIHQGITNGLEDLSLHYLPSFADAE-EED 236

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E +  KL   ++ +     TL GPHR DL   Y +      +GS G+Q+   + +
Sbjct: 237 EAVLFETFMIKLSQMKEQEIRRGMTLAGPHRDDLAF-YINGKEVQTYGSQGQQRTTALSL 295

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   LI    G  P+LLLD++ + LD  ++  L         Q F+T T     +SLN
Sbjct: 296 KLAEIELIQEEIGEYPVLLLDDVLSELDPYRQTQLIETFQS-KVQTFITATG---IESLN 351


>gi|126663370|ref|ZP_01734368.1| putative DNA replication and repair protein [Flavobacteria
           bacterium BAL38]
 gi|126625028|gb|EAZ95718.1| putative DNA replication and repair protein [Flavobacteria
           bacterium BAL38]
          Length = 359

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 167/353 (47%), Gaps = 26/353 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N A +   FDA+   FVG NGVGKTNIL+AI  L+ G+ +         R
Sbjct: 3   LKQLSLLNYKNLAQIEFEFDAKINCFVGKNGVGKTNILDAIYHLAYGKSYFNPLAIQNIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G   FF   A +E       I   L+    ++++         ++ D+L++HL +  LV
Sbjct: 63  HGE-EFFVIDALLEKNNKEEKIVCSLKKGQKKTIKRNG------KIYDKLSEHLGLIPLV 115

Query: 127 ---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYF 178
              PS  D I  G S  RR+F+D ++  +D  + + +I +++++  RN LL        F
Sbjct: 116 IISPSDSDLIVEG-SETRRKFIDSVIATLDNSYLQLLIQYQKIVAQRNALLKYFALNQTF 174

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D+   S    Q++  G  I   R + ++    +  ++    +  + K++L      K++ 
Sbjct: 175 DADNLSIYNEQLSHSGQLIFEKRKQFLSDFIPIFEKHHTNISGGNEKVAL------KYES 228

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                K+     L +  + D + + T  G H+ DLI +     I    GS G+QK  L+ 
Sbjct: 229 QL--FKKNLLLLLEESLQKDRIIQYTSAGIHKDDLIFEIEGYPIK-KFGSQGQQKSFLIA 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGT 350
           + LA    +   +G  PILL D+I   LDE +   +  +V D +  QIF++ T
Sbjct: 286 LKLAQFEFMKKQSGELPILLFDDIFDKLDETRVQKIVTMVNDAVFGQIFISDT 338


>gi|160932421|ref|ZP_02079811.1| hypothetical protein CLOLEP_01256 [Clostridium leptum DSM 753]
 gi|156868380|gb|EDO61752.1| hypothetical protein CLOLEP_01256 [Clostridium leptum DSM 753]
          Length = 368

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 169/370 (45%), Gaps = 21/370 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L   ++RN     L+   Q  +  GDN  GKTN+LEA+   + GR FR A   ++
Sbjct: 1   MKVNRLGFRDYRNLKENELIPGPQVNVICGDNAQGKTNLLEAVWLFTGGRSFRGARDQEL 60

Query: 65  TRIGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL-NKHLR 121
               S   +  +     E  E  A I+I    +     R  Q+N V       L  K   
Sbjct: 61  IAFSSRAGAVLALDFEAEEREQTAKITIGRGAKK----RAAQLNGVDQPAASSLIGKFCA 116

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           + +    +  +  G SM RR+FLD  +    P + R +  + R +  RN LL +  + S 
Sbjct: 117 VVFSPDHLSLVKEGPSM-RRKFLDAALCQRKPAYARLLSQYSRTLAQRNTLLKDISYHSE 175

Query: 182 WCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFL-DG 234
              ++E    +++ LG  I I R   +  LS    E     +    + ++   +G L DG
Sbjct: 176 LLETLEIWDEKLSGLGAAIIIERKRYLERLSEAAGEIYDGISQGRERFAVRYDSGLLRDG 235

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
             +  +   +E     L +GRK D  +  T  GPHR DL+V   +K+    +GS G+Q+ 
Sbjct: 236 GEEAGY---RERLFSLLQNGRKEDLNAGFTTKGPHRDDLLVTVQEKSAR-EYGSQGQQRS 291

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            ++ + LA A L++   G  P++LLD++ + LD  +++ L   +   G Q+F+T  D + 
Sbjct: 292 CVLALKLAEAALLAEALGEKPVILLDDVMSELDASRQDYLLNKIQ--GWQVFITCCDPNS 349

Query: 355 FDSLNETAKF 364
              L++   F
Sbjct: 350 ISGLSQGRTF 359


>gi|333030065|ref|ZP_08458126.1| DNA replication and repair protein recF [Bacteroides coprosuis DSM
           18011]
 gi|332740662|gb|EGJ71144.1| DNA replication and repair protein recF [Bacteroides coprosuis DSM
           18011]
          Length = 372

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 161/359 (44%), Gaps = 34/359 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  +++  ++N   + L F  +   F+G+NG+GKTNIL+ I +LS  +       +   +
Sbjct: 3   ITHISVLNYKNLEEVELEFSPKLNCFLGENGMGKTNILDTIYYLSFCKSSINPIDSQNIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS--- 123
            G   F         ++G  D S+  E  +   V C        +      ++ R+S   
Sbjct: 63  HGEDFFV--------IQGFYD-SLSGEIEE---VYCGLKRRKKKQFKRNKKEYTRLSDHI 110

Query: 124 WLVP----SMD--RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEG 176
            LVP    S D  R+  G S ERR+F+D ++   D  +   +I + + M+ RN LL +E 
Sbjct: 111 GLVPLVMVSPDDARLIDGGSDERRKFMDMVISQYDKDYLSALIQYNKAMQQRNSLLKSEN 170

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
             D    S +E  MAE G+ +   R + I     L  EY    +     +SL+   D K 
Sbjct: 171 PIDPQLFSVLEELMAESGIVVYKKRAQFIEEFIPLFQEYYSSISQDKESVSLSYDSDLKE 230

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           +     LKE  A+ L  G         +L G H+ DLI+   D +I    GS G+ K  L
Sbjct: 231 NDLLTLLKESRARDLIMG--------YSLKGIHKDDLIMSLGDFSIK-KEGSQGQNKTYL 281

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTGTDKS 353
           V + LA    +       P+LLLD+I   LD  +   +  +V   + G QIF+T T++S
Sbjct: 282 VALKLAQFSFLRKINNKTPLLLLDDIFDKLDALRVEQIMHLVAGEEFG-QIFITDTNRS 339


>gi|317126745|ref|YP_004093027.1| DNA replication and repair protein RecF [Bacillus cellulosilyticus
           DSM 2522]
 gi|315471693|gb|ADU28296.1| DNA replication and repair protein RecF [Bacillus cellulosilyticus
           DSM 2522]
          Length = 373

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 156/360 (43%), Gaps = 32/360 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + I ++RNY  L L F+ +  + +G+N  GKTN++E+I  L+  +  R     ++ R
Sbjct: 3   IKQITIRDYRNYDHLTLPFNNKINVIIGENAQGKTNLMESIYVLAMAKSHRTTKDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              P     FA+VEG     +  +++E       + ++IN +  + + E      I    
Sbjct: 63  WDQP-----FAKVEGQINNKNGPLQMEVIFSTKGKKVKINHLEKKRLSEYIGSCNIVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GYFDSS 181
           P    +  G    RRRFLD  +  I P +   +  + + ++ RN+ L +        D++
Sbjct: 118 PEDLSLVKGSPQIRRRFLDMEMGQIHPVYLYYLSQYHKQLKQRNQWLKDVLQKKQKPDAT 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHIKLSLTGF 231
               +  Q+      +   R + I  L              +E ++    P I +S    
Sbjct: 178 MLDVMTDQLIISAGHVIEKRYDFIKKLQKWAAPIHHDISRGLESLEINYVPSINVS---- 233

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTG 290
            D         LKEE     FD  K + + R  TLIGPHR DL      + I    GS G
Sbjct: 234 EDMDLSTLLTVLKEE-----FDRLKDNELRRGITLIGPHRDDLQFLVNGRDIQ-TFGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T
Sbjct: 288 QQRTTALSVKLAELELIHEKVGEYPILLLDDVLSELDDHRQSHLLNTIQG-KVQTFVTTT 346


>gi|220933196|ref|YP_002512095.1| DNA replication and repair protein RecF [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|254790497|sp|B8GSS3|RECF_THISH RecName: Full=DNA replication and repair protein recF
 gi|219994506|gb|ACL71108.1| DNA replication and repair protein RecF [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 360

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 149/330 (45%), Gaps = 37/330 (11%)

Query: 34  GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF------FSTFARVEGMEGLAD 87
           G NG GKT++LEAI  LS G  FR       TR  SP            AR++   G   
Sbjct: 30  GVNGAGKTSLLEAIHLLSTGHSFR-------TRQLSPLLAPDCDAVEVVARIQSTGGGEP 82

Query: 88  ISIKL-ETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146
             + + +TRD  + R   I    +R + +L + L +  + P    + SG    RR FLD 
Sbjct: 83  WPVGIRKTRDSTTAR---IRGENVRSLADLARLLPLQVMHPESHLLVSGGPGYRRAFLDW 139

Query: 147 MVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWCSSIEAQMAELGVKINIARVE 203
             F  DP +      +  L+  RN  L   +     S+W    +  + E G  +++AR  
Sbjct: 140 GCFHTDPAYHDHWRRYRHLLCQRNAALRDRSPARLLSAW----DTALGEAGSALDLARAT 195

Query: 204 MINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            +  L    + Y+   K+  P      T  L  ++ + +   +E  ++ L    + D  +
Sbjct: 196 HLQTL----LPYLDSLKQELPE-----TSGLALEYRRGWNP-EESLSESLAHSVQRDRSA 245

Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
             T +GPHR++L+     + +     S G+QK V++ + +A +  +  T GF P++L+D+
Sbjct: 246 GFTQVGPHRAELLCRLDGRPVAQV-ASRGQQKSVVLMLKMAQSLWLMETLGFPPVVLVDD 304

Query: 322 ISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           + A LD   R  L   +  +GSQ+F+T  +
Sbjct: 305 LPAELDARHRGWLMNCLQGLGSQVFVTAIE 334


>gi|66043274|ref|YP_233115.1| recombination protein F [Pseudomonas syringae pv. syringae B728a]
 gi|81308684|sp|Q500U5|RECF_PSEU2 RecName: Full=DNA replication and repair protein recF
 gi|63253981|gb|AAY35077.1| RecF protein [Pseudomonas syringae pv. syringae B728a]
          Length = 367

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 16/345 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++E +
Sbjct: 182 ELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
             L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A   L+
Sbjct: 234 TVLASSIHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|117618875|ref|YP_854530.1| DNA replication and repair protein RecF [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560282|gb|ABK37230.1| DNA replication and repair protein RecF [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 367

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 156/352 (44%), Gaps = 34/352 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +S+FRN     L       I VG NG GKT++LEAI +L  GR FR      V R G 
Sbjct: 6   LQLSDFRNIQQASLALSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRVIRQGE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            + F+ FA+ E +EG   + I L  +D      L+I     + + EL + L +  + P  
Sbjct: 66  RA-FTLFAQCE-LEG-RQVPIGL-AKDKSGETQLKIAGAQAQRLAELAELLPVQLIHPDG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYFDSSW 182
             + +G    RR +LD  VF  +P          RL++ RN LL +        Y+D   
Sbjct: 122 FNLLTGGPQARRAWLDWGVFHQEPTFFSLWGRVRRLLKQRNALLRQSSQYRQLAYWDQ-- 179

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
                 ++  LG ++   R     A++ LI E +  +  P   +SL  +   + D    A
Sbjct: 180 ------ELVRLGGELAEFRASYCQAITPLIKE-MTADFLPEFDISLGFYRGWEKDTPLNA 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG---STGEQKVVLVGI 299
           L E        G + D     T +GP ++D+ +    KA  +      S G+ K+++  +
Sbjct: 233 LLEA-------GFERDRALGYTGVGPQKADVRL----KANGVPAQDILSRGQLKLLVCAM 281

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            LA    ++  +    I L+D+ ++ LD DKR  L   +    SQ+F+T  D
Sbjct: 282 RLAQGLYLNQHSSRGCIFLIDDFASELDVDKRRLLAARLKQCASQVFITAID 333


>gi|228942641|ref|ZP_04105173.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228975571|ref|ZP_04136123.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982207|ref|ZP_04142496.1| DNA replication and repair protein recF [Bacillus thuringiensis
           Bt407]
 gi|228777559|gb|EEM25837.1| DNA replication and repair protein recF [Bacillus thuringiensis
           Bt407]
 gi|228784181|gb|EEM32208.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817067|gb|EEM63160.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326937801|gb|AEA13697.1| recombination protein F [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 375

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 170/381 (44%), Gaps = 26/381 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEEFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  SV  
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT--SVDG 349

Query: 357 SLNET---AKFMRISNHQALC 374
             +ET   AK + ++N    C
Sbjct: 350 IEHETLKDAKTIHVTNGTVDC 370


>gi|257485597|ref|ZP_05639638.1| recombination protein F [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011885|gb|EGH91941.1| recombination protein F [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 367

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 166/348 (47%), Gaps = 22/348 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           P+  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PAC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185
             R+  G    RR+FLD  VF ++PR    M+ ++RL   ++ RN  L  G  D++  ++
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAA 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++
Sbjct: 179 WDRELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +  L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A  
Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|188590699|ref|YP_001919469.1| recombination protein F [Clostridium botulinum E3 str. Alaska E43]
 gi|226737778|sp|B2UX46|RECF_CLOBA RecName: Full=DNA replication and repair protein recF
 gi|188500980|gb|ACD54116.1| DNA replication and repair protein RecF [Clostridium botulinum E3
           str. Alaska E43]
          Length = 361

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 171/367 (46%), Gaps = 13/367 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + ++ +RNY +L L       +F+GDN  GKTN+LE+I + +  +  R +   D+  
Sbjct: 3   IKAIMLANYRNYNNLELNLSEGVNVFIGDNAQGKTNVLESIYYCAFAKSHRTSRDKDLIN 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              + ++ S     + ++   DI I    RD +  + +++N + I  + EL     +   
Sbjct: 63  WKENEAYISLLVGKKRLDKRIDIKI---LRDGK--KAIKVNSIKINKIGELFGTFNVVMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   +I       RR+FLD  +  I  ++   ++ + +++  RN +L    F+      
Sbjct: 118 SPEDLKIIKESPGIRRKFLDMELCQISKKYYFNLVQYNKILNERNVILRSRDFNKDILEV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCALK 244
            + Q+ E    I   R+E I+ + +   +++  E     +  +  +  G KF  +F   K
Sbjct: 178 YDLQLVECADYIVKERLEYIDKI-NYYGKFIHNEITSGKEDIVFKYDSGIKFKDNF---K 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             + +KL +    D     T +GPHR D  V   +       GS G+Q+  ++ +  +  
Sbjct: 234 YAFLEKLRNNLLRDREQGITSVGPHRDDFNV-LINNIDVKKFGSQGQQRTAVLTMKFSSL 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           ++I   T   PILLLD++ + LD +++  +   ++DI + I  TG +  + D L++ +K 
Sbjct: 293 KIIKEITKEYPILLLDDVLSELDINRKRYVLSTLSDIQTIITCTGIN-DLEDYLDDKSKV 351

Query: 365 MRISNHQ 371
             + N +
Sbjct: 352 FNVCNGE 358


>gi|149182287|ref|ZP_01860766.1| recombination protein F [Bacillus sp. SG-1]
 gi|148849979|gb|EDL64150.1| recombination protein F [Bacillus sp. SG-1]
          Length = 372

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/376 (23%), Positives = 169/376 (44%), Gaps = 23/376 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  +RNY S+ + F+    + +G+N  GKTNI+E+I  L+  +  R ++  D+ R
Sbjct: 3   IEEIQLKNYRNYDSVDISFENNVNVILGENAQGKTNIMESIYVLAMAKSHRTSNDKDLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   +A+++G     + S+ LE    +  +  + N +  + + +   ++ +    
Sbjct: 63  -----WDEEYAKIKGRIKKHNGSLPLELVISKKGKKAKSNHIEQKKLSQYVGNMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RRRF+D  +  + P +   +  ++++++ RN  L    T    D + 
Sbjct: 118 PEDLHLVKGSPQVRRRFIDMEIGQVSPVYLHDIALYQKILQQRNHYLKMLQTRKQKDETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
              +  Q+ E+  KI   R E I     L+ E+ +            + +     +D   
Sbjct: 178 LDVLTEQLTEVSAKIIRKRFEFI----ELLQEWARPIHSGISRGLETLDIQYKPSIDVCD 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           DQ +  + +  A+K    R+ +     TL GPHR DL     D+ +    GS G+Q+   
Sbjct: 234 DQDWSKMIDIIAEKFHTIRQREIDRGVTLAGPHRDDLQFFVNDRDVQ-TFGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     D
Sbjct: 293 LSLKLAEIELIHSEIKEYPILLLDDVLSELDDFRQSHLLNTIQG-KVQTFVTTTSVDGID 351

Query: 357 --SLNETAKFMRISNH 370
             +LN+   F   + H
Sbjct: 352 HQTLNDATTFEVETGH 367


>gi|75761790|ref|ZP_00741725.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218895145|ref|YP_002443556.1| DNA replication and repair protein RecF [Bacillus cereus G9842]
 gi|228905436|ref|ZP_04069391.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL
           4222]
 gi|228968645|ref|ZP_04129628.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|226737769|sp|B7IS23|RECF_BACC2 RecName: Full=DNA replication and repair protein recF
 gi|74490723|gb|EAO54004.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218546019|gb|ACK98413.1| DNA replication and repair protein RecF [Bacillus cereus G9842]
 gi|228791074|gb|EEM38692.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228854256|gb|EEM98959.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL
           4222]
          Length = 375

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 170/381 (44%), Gaps = 26/381 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEEFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGAKILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  SV  
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT--SVDG 349

Query: 357 SLNET---AKFMRISNHQALC 374
             +ET   AK + ++N    C
Sbjct: 350 IEHETLKDAKTIHVTNGTVDC 370


>gi|319440152|ref|ZP_07989308.1| recombination protein F [Corynebacterium variabile DSM 44702]
          Length = 391

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 168/383 (43%), Gaps = 28/383 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++ +FR++ASL L      T+F G NG GKTNI+EA+ +L+     R +  A + R
Sbjct: 3   LRSLHLGDFRSWASLDLELTPGVTVFAGPNGNGKTNIVEAVGYLAHLSSHRVSGDAALVR 62

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G  S   S  A   G E  A + I       R      +N   +R    L   +R +  
Sbjct: 63  EGCDSARVSATAVNHGRELTAHLVINA-----RGSNKAAVNRTSLRNQRGLAGIVRTTMF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    +  G   +RR FLD++V A  PR      D+++++R RN LL       +   +
Sbjct: 118 APEDLALVRGEPEQRRHFLDQVVAARYPRLAGVRADYDKVLRQRNALLKSASSPVAVADT 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQS 239
           +   +AQ+A LG +I  ARV++++ L+  + E    +   + P + +S T  +D +    
Sbjct: 178 LDVWDAQLAHLGGEIMSARVQVVHDLAPHVEESYARLAPGSRPAL-ISYTSTVDAELADV 236

Query: 240 FCALKEEY-----------AKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHG 287
                  Y             +L   R  +     TL GPHR DL ++     A   A  
Sbjct: 237 GVDPGGTYLVDPDVAEAVLLSRLAQRRNAEVERGITLTGPHRDDLQLILGTQPAKGFA-- 294

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE     + + LA  R+     G  P+++LD++ A LD  +R AL  +  +    +  
Sbjct: 295 SHGESWSFALTLRLASHRM-QRADGTEPLVILDDVFAELDRARRRALVDLAGEAEQVLIT 353

Query: 348 TGTDKSVFDSLNETAKFMRISNH 370
              D+ +   L E A+   +  H
Sbjct: 354 AAVDEDIPADLREIAQVHAVRAH 376


>gi|71736050|ref|YP_272318.1| recombination protein F [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|97180865|sp|Q48QJ8|RECF_PSE14 RecName: Full=DNA replication and repair protein recF
 gi|71556603|gb|AAZ35814.1| DNA replication and repair protein RecF [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 367

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 166/348 (47%), Gaps = 22/348 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYVQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185
             R+  G    RR+FLD  VF ++PR    M+ ++RL   ++ RN  L  G  D++  ++
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAA 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++
Sbjct: 179 WDRELCYASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +  L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A  
Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|241668638|ref|ZP_04756216.1| DNA replication and repair protein RecF [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877171|ref|ZP_05249881.1| DNA replication and repair protein recF [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843192|gb|EET21606.1| DNA replication and repair protein recF [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 349

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 158/359 (44%), Gaps = 16/359 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRN       F       VG NG GKT+ILE+I FLS  R FR +    +    S
Sbjct: 6   LRLQNFRNIPIKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIINHDS 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F          E +  +S     R   S    ++N  + +   E+ + L I  + P  
Sbjct: 66  DEFIVYTKAYNPDEVVISLS-----RKKNSNNISKLNSEIQKNHTEITRVLPIQLMNPES 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             I +  + +R + LD   F +D    +     + L++ RN  L + Y   ++ + I+ +
Sbjct: 121 FNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLIKQRNSALKQNY-PKAYINGIDKK 179

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           + E    ++  R      L   I E + + N P +KL +  F      +S   + EE   
Sbjct: 180 LCEFADILDYKRQAYFIKLKPKIYEVLSQFN-PDLKLDIDYFRGWNSHKSLVQVLEES-- 236

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
             FD    D+    T  GPH++D+++    K I     S G+QK+++  I LA   + ++
Sbjct: 237 --FDS---DNRYNVTSHGPHKADIVLTINHKPIQDIF-SRGQQKLLICAIKLAQGEIHNS 290

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAKFMRI 367
                 I L+D+I++ LD      LF  + ++ SQ+F+T T+K+ + D LN  +  + I
Sbjct: 291 ENENKCIYLIDDITSELDNTHTKTLFSYLKNLKSQVFITTTEKNKIIDFLNLDSHIIEI 349


>gi|149370654|ref|ZP_01890343.1| DNA replication and repair protein RecF, ABC family ATPase
           [unidentified eubacterium SCB49]
 gi|149356205|gb|EDM44762.1| DNA replication and repair protein RecF, ABC family ATPase
           [unidentified eubacterium SCB49]
          Length = 359

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 172/376 (45%), Gaps = 40/376 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  ++N+      FD     F G NGVGKTN L+AI  LS G+ +     +   R G 
Sbjct: 6   LSLLNYKNFEVQTFEFDPNINCFTGHNGVGKTNALDAIYHLSFGKSYFNPITSQNIRHGE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR----VVDELNKHLRISWL 125
             F      VEG        IK +  +   V   +    VI+      D  + H+    L
Sbjct: 66  EFFV-----VEGQ------YIKTDRPEKIVVSAKKGQKKVIKRNGKAYDRFSDHIGFLPL 114

Query: 126 V---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           V   P+  D I  G S  RR+F+D ++   D  + + ++ + +++  RN LL     + +
Sbjct: 115 VIISPADRDLIIEG-SDTRRKFIDGVISQGDSLYLKDILSYGKILVQRNSLLKYFAANHT 173

Query: 182 W----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
           W     +  + Q++ELG +I+ +R E +   + + +E  +  +      + T  LD K  
Sbjct: 174 WNKDNLAIYDLQLSELGERIHKSRKEFLKEFTPIFLEKYKAIS----SGTETVGLDYK-- 227

Query: 238 QSFCALKEEYAKKLFDGR-KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                L E+  + L       D MS+ T +G H+ DLI    +  I    GS G+QK  L
Sbjct: 228 ---SQLNEDRMEHLLQQNVHKDKMSQYTSVGTHKDDLIFTIDEHPIK-KFGSQGQQKSFL 283

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD---- 351
           + + LA    I N     PILLLD+I   LDE++   + ++V D    Q+F++ T     
Sbjct: 284 IALKLAQFEFIKNVHKVHPILLLDDIFDKLDEERVAHIIKLVDDENFGQLFISDTHADRT 343

Query: 352 KSVFDSLNETAKFMRI 367
           ++V   ++++ KF ++
Sbjct: 344 EAVVKKVSQSYKFFKL 359


>gi|325846385|ref|ZP_08169354.1| putative DNA replication and repair protein RecF [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481569|gb|EGC84609.1| putative DNA replication and repair protein RecF [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 357

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 165/367 (44%), Gaps = 35/367 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +S+FRNY S  + F+    IF+GDN  GKTN+LE+I +L+  + F+     D+  
Sbjct: 3   IQSLRLSKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDLIM 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                  +    +   E   ++ I++    + + + + +ND+      +L    ++    
Sbjct: 63  FNEKE-MALDGLIRKNESFKNVKIRV----NENKKEIFVNDIKYDKNKDLKSLFKLVLFT 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183
           P    I       RR  +D ++ +++  ++    DF++++  RN++L      YF     
Sbjct: 118 PEDLTIIKDGPNFRRNLIDDIIISVNFSYKALKKDFDKVLSQRNKVLKNQRSKYFKEELM 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            + + Q+  L  KI   R + I    SLI  Y +K +        +   + K D S    
Sbjct: 178 -AFDQQIIRLNYKIYRYREKYI----SLINTYAKKNH--------SNLTENKEDLSIIYR 224

Query: 244 K-------EEYAKKLFDGRKMDSMSRRTLIGPHRS--DLIVDYCDKAITIAHGSTGEQKV 294
                   EEY +K    +  D    RT  G  R   D+I++  D   +   GS G+Q+ 
Sbjct: 225 PDIVAKDIEEYREKFSKNKSYDLKYYRTTSGSQRDEIDIIINGKD---SKKFGSQGQQRS 281

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            ++ I LA+  LI NT+    I+L D++ + LDE + N L   +   G Q  +T T+   
Sbjct: 282 AILNIKLANVNLIENTSQDKAIILFDDVFSELDEKRSNFLLENLG--GFQTIITATNTKS 339

Query: 355 FDSLNET 361
            D ++++
Sbjct: 340 LDRVDKS 346


>gi|52424542|ref|YP_087679.1| recombination protein F [Mannheimia succiniciproducens MBEL55E]
 gi|81691468|sp|Q65VB6|RECF_MANSM RecName: Full=DNA replication and repair protein recF
 gi|52306594|gb|AAU37094.1| RecF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 360

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 160/346 (46%), Gaps = 15/346 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN +++ L FD      VG+NG GKT++LEA+ +L  GR F+ +    V
Sbjct: 1   MAIARLIVENFRNISAVDLEFDHGFNFLVGNNGSGKTSLLEALFYLGHGRSFKSSVTTRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P  F+   R+  ++    + ++ + +D  ++  ++IN      + +L   L +  
Sbjct: 61  IRYDQPH-FTLHGRIRELQHEWSVGLQKQRKDGNTI--VKINGEDGNKISDLAHLLPMQI 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F   P          RL++ RN  L + Y D +   
Sbjct: 118 ITPEGLTLLNGGPSYRRAFLDWGLFHHQPNFHSAWSALHRLLKQRNAALNQTY-DYNMLK 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R +   ALS  I E   +   P + + ++      F Q +    
Sbjct: 177 PWDMELAKLAHQVSQWRADYAEALSPEI-EQTCRLFLPELDIHVS------FHQGW-EKD 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +YA+ L +  + D     T+ GP ++D    +    + +    S G+ K+++  + LA 
Sbjct: 229 TDYAQLLTENFERDKAIGYTVSGPQKADF--RFKSNGLPVEDVLSRGQLKLLMCALRLAQ 286

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
              +        I L+D+ ++ LDE KR  L + + +  SQ+F+T 
Sbjct: 287 GEHLMAQKNRHCIFLIDDFASELDETKRALLAQRLQNSNSQVFVTA 332


>gi|302543961|ref|ZP_07296303.1| RecF protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302461579|gb|EFL24672.1| RecF protein [Streptomyces himastatinicus ATCC 53653]
          Length = 383

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 162/369 (43%), Gaps = 33/369 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   +      T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARAEVALGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A V+G        ++LE    ++ R        +R  D L   LR   
Sbjct: 61  VRMGAERAVVRAAVVQGDR---QQLVELELNPGKANRARINRSSQVRPRDALGI-LRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDDLITARAPRMAGIRSDYDRVLKQRNSLLKTAAMARRHGS 176

Query: 179 --------DSSWCS--SIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIK 225
                   D++  +    +  +A  G ++   R ++I+ L  L     E +     P + 
Sbjct: 177 RSGSGGSGDAALATLDVWDQHLARTGAELLAQRFDLISVLQPLADKAYEQLAPGGGP-VL 235

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLF----DGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           L   G      D +    +EE  ++L     D RK +     TL+GPHR DL++    + 
Sbjct: 236 LEYRG--SAGEDLAAAGSREELYERLMAALADARKQEIERGVTLVGPHRDDLVLK-LGRL 292

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   
Sbjct: 293 PAKGYASHGESWSYALALRLASYDLL-RAEGAEPVLVLDDVFAELDSRRRERLAELVAP- 350

Query: 342 GSQIFMTGT 350
           G Q+ +T  
Sbjct: 351 GEQVLVTAA 359


>gi|325961454|ref|YP_004239360.1| DNA replication and repair protein RecF [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323467541|gb|ADX71226.1| DNA replication and repair protein RecF [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 403

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 173/390 (44%), Gaps = 42/390 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++++FR+YA + L      T+ VG NG+GKTN++EAI +L+     R +S A + R
Sbjct: 3   LEHLSLTDFRSYAQVDLALGPGVTVLVGYNGIGKTNLMEAIGYLATMSSHRVSSDAPLLR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+        R   + G     ++LE    R+ R        +R  D L    +     
Sbjct: 63  FGTD---RALVRARLVRGGQITILELEINAGRANRGRINRSNPVRARDLLGI-CQTVLFA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183
           P    +  G    RRRFLD ++ ++ P H     D++R+++ RN LL     G F S+  
Sbjct: 119 PEDLALVKGDPSNRRRFLDELLASLVPHHAATRSDYDRVLKQRNALLKSARAGKFTSAHE 178

Query: 184 SSIEA---QMAELGVKINIARVEMINAL-SSLIMEYVQ--KENFPH---IKLSLTGFLDG 234
           ++++     MA  G ++  AR+E++  L   L   Y Q   E+ P     + +L   +D 
Sbjct: 179 ATLDVWDQHMARAGAELLHARLELVERLRPHLARAYAQLTDESKPADAVYRSTLQNQMDD 238

Query: 235 KFDQ--------------------SFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
                                   SF    L E Y +   + R+ +     +L+GPHR +
Sbjct: 239 DGAALVGAGGTAAGGASAGAEDLLSFGVEQLTERYVQAFAESRRKELERGISLVGPHRDE 298

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLDED 329
           L +    +A    + S GE   + + + LA   ++   + T G APIL+LD++ A LD  
Sbjct: 299 LEL-VLGQAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGSAPILILDDVFAELDVQ 357

Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
           +R  L  IV+     +     D  + + L+
Sbjct: 358 RRRKLAAIVSGAEQVLVTAAVDADIPEELS 387


>gi|124009358|ref|ZP_01694036.1| DNA replication and repair protein RecF [Microscilla marina ATCC
           23134]
 gi|123985020|gb|EAY24971.1| DNA replication and repair protein RecF [Microscilla marina ATCC
           23134]
          Length = 372

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 162/353 (45%), Gaps = 36/353 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYADVTRIG 68
           +N+  F+NY  L L F +     VGDNG GKTN+L+AI +LS  +G F   +   V  + 
Sbjct: 6   INLLNFKNYEMLDLDFSSSVNCIVGDNGSGKTNLLDAIHYLSMSKGAFGGGNTQHV--LH 63

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHL---RISW 124
              FF     V+G+    D+  ++     +   +  ++N    +  D+++ H+    +  
Sbjct: 64  KEDFFM----VKGVFQAKDLDYEVTCGYKKGQAKVFKVNQ---KQYDKISDHIGRFPVVL 116

Query: 125 LVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFD 179
           + P+  D I  G  + RR+F D ++  +D  +   +I +   ++ RN LL +     + D
Sbjct: 117 IAPNDTDTITEGSEL-RRKFFDSIISQLDKNYLINLIQYTHHLKQRNSLLKQFAERNFVD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFD 237
            S   +   ++  LG  +   R E I   + +  E+ Q+  EN    +L         + 
Sbjct: 176 RSLIDTYNHKLIALGKAVCDKRQEFITEFAPIFREHYQELTENKEITELV--------YQ 227

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVL 296
             F  L+E YA         D   +RT  G H+ D   D+  D  +    GS G+QK  +
Sbjct: 228 SQF--LEEHYADDFRQALPDDLRLQRTTRGIHKDD--YDFLIDDHLLRKFGSQGQQKSYV 283

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMT 348
           + + LAH  +I N T   PILLLD+I   LD+ + + L R +      QIF+T
Sbjct: 284 IALKLAHFDIIKNYTFMKPILLLDDIFDKLDDKRMDKLMRKVAAHAFGQIFIT 336


>gi|167036435|ref|YP_001664013.1| recombination protein F [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320114861|ref|YP_004185020.1| DNA replication and repair protein RecF [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|226737846|sp|B0KAG3|RECF_THEP3 RecName: Full=DNA replication and repair protein recF
 gi|166855269|gb|ABY93677.1| DNA replication and repair protein RecF [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319927952|gb|ADV78637.1| DNA replication and repair protein RecF [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 362

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 161/354 (45%), Gaps = 21/354 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRN    ++ F     IF G N  GK+N+LE+I  LS GR FR +   ++ +
Sbjct: 3   VKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTELIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G   F   + +    +   D  I+   + + + + +++N   I+   EL   L      
Sbjct: 63  FGEDYF---YVKAIICQENNDKKIEFGYKKNEN-KVIKVNGNKIKSTSELLGQLLTVIFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183
           P    I       RR++LD  +  ++  +   ++ + +++  RN+LL    EG    S  
Sbjct: 119 PEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMNRNKLLKSIKEGK-SKSIL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQSF 240
              + Q+ E G KI + R   +  +   I ++   +  E    + L+  G  D   ++  
Sbjct: 178 EIFDDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEE-- 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298
             +K+   +KL     +D     T +GPHR D  +I++  D  +   + S G+Q+   + 
Sbjct: 236 -IVKKRLKEKLSKNIDVDLRYFTTQVGPHREDFKIIINGYDSRV---YSSQGQQRTAALC 291

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + L+   ++   T   P+LLLD++ + LDE+++  +   +   G Q F+T T K
Sbjct: 292 LKLSEFEILKKETSEKPVLLLDDVMSELDENRKKYVLERLK--GFQTFITHTTK 343


>gi|223043401|ref|ZP_03613447.1| DNA replication and repair protein RecF [Staphylococcus capitis
           SK14]
 gi|222443190|gb|EEE49289.1| DNA replication and repair protein RecF [Staphylococcus capitis
           SK14]
          Length = 371

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 170/384 (44%), Gaps = 29/384 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L + ++RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLEKYRNYEEVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FKADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSKLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q A+  +K+ + R   I  L  L            E +  +  P +KLS   
Sbjct: 176 TMLEVLNQQFAQYALKVTLRREHFIKELEELAQPIHSGITNEREKLGLKYLPSLKLS--- 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                +++    L EE  + L D  + +      L GPHR DL  +  +      +GS G
Sbjct: 233 ----DYEKEESELLEEVIELLNDNLQREKERGVCLYGPHRDDLGFN-VNGMDAQTYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346

Query: 351 DKSVFD-SLNETAKFMRISNHQAL 373
                D  +   AK  RIS  + L
Sbjct: 347 SVDGIDHEIMNNAKLYRISQGELL 370


>gi|323463205|gb|ADX75358.1| DNA replication and repair protein RecF [Staphylococcus
           pseudintermedius ED99]
          Length = 371

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 95/387 (24%), Positives = 171/387 (44%), Gaps = 43/387 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R  +  ++
Sbjct: 1   MKLKTLQLENYRNYEQISLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTTNDREL 60

Query: 65  TRIGSPSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            R     F + +A++EG      G+  +++ + T+  + V+   +N +    + +   HL
Sbjct: 61  IR-----FNAEYAKIEGELNFRHGMMPLTMFI-TKKGKKVK---VNHLEQSRLTQYIGHL 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-- 178
            +    P    I  G    RRRF+D  +  I   +   +  ++R+++ RN  L +     
Sbjct: 112 NVVLFAPEDLSIVKGAPQVRRRFIDMELGQISRLYLNDLSQYQRILKQRNHYLKQLQLKK 171

Query: 179 --DSSWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKL 226
             D++    +  Q  E  VK+   R + I  L  L            E +  +  P IK+
Sbjct: 172 TQDTTMLEVLNHQFVEYAVKVTQRRQQFIKELELLAAPIHSGITNERETLTLQYLPSIKI 231

Query: 227 S-LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI--VDYCDKAIT 283
             ++   D    Q    ++    +++  G         +L GPHR DL   V+  D    
Sbjct: 232 EDVSQSEDVLIQQVLEDVQHHMEREIERG--------VSLYGPHRDDLAFQVNGMDAQ-- 281

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
             +GS G+Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     
Sbjct: 282 -TYGSQGQQRTTALSIKLAEIELMNQEVGEYPILLLDDVLSELDDARQTHLLSTIQH-KV 339

Query: 344 QIFMTGTDKSVFD-SLNETAKFMRISN 369
           Q F+T T     D  + + AK  RI+ 
Sbjct: 340 QTFVTTTSVDGIDHEIMKDAKVYRITQ 366


>gi|315273169|ref|ZP_07869215.1| DNA replication and repair protein RecF [Listeria marthii FSL
           S4-120]
 gi|313616205|gb|EFR89284.1| DNA replication and repair protein RecF [Listeria marthii FSL
           S4-120]
          Length = 370

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 162/371 (43%), Gaps = 48/371 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       S+ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q 
Sbjct: 126 GAPGVRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPMLLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249
           A++ + +   R + I  L                  +    +  +  +    LK EY A 
Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228

Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
              +G           +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 VTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + + LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  
Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346

Query: 353 SVFDSLNETAK 363
           S  D  +ET K
Sbjct: 347 SGID--HETLK 355


>gi|22299987|ref|NP_683234.1| recombination protein F [Thermosynechococcus elongatus BP-1]
 gi|51316460|sp|Q8DG79|RECF_THEEB RecName: Full=DNA replication and repair protein recF
 gi|22296172|dbj|BAC09996.1| DNA repair and genetic recombination protein [Thermosynechococcus
           elongatus BP-1]
          Length = 379

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 186/378 (49%), Gaps = 33/378 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  FRNY+   + F A  TI VGDN  GK+N+LEA+ +L+  +  R     D+ +
Sbjct: 3   LKSLHLRHFRNYSEQSVTFAAPKTILVGDNAQGKSNLLEAVEWLATLQSHRTHRDRDLIQ 62

Query: 67  IGSPSFFSTFARVEGM---EGLA-DISIKLETRDDRSVRCLQINDVVI-RVVDELNKHLR 121
            G  S     A++E     +G+  D+++ L      S R L++N   + R  D L +   
Sbjct: 63  QGHES-----AQIEATLERQGVPLDLAVSLRP---SSGRVLRVNGCTVKRTADFLGQLNA 114

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGY 177
           + +    ++ +  G    RR +LDR++  ++P + + +  +++ +R RN LL    ++G+
Sbjct: 115 VEFSCLDLE-LVRGTPAIRRNWLDRILLQLEPLYSQLLQTYQKALRQRNALLKQAGSQGW 173

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENFPHIKLSLTGFL 232
            ++ W  +   Q+   G +I   R  +I  L+ L  ++ +     +E       S     
Sbjct: 174 DEALW-QAWNQQLVINGTRIIRRRQRLIERLAPLAQDWHRVLSGDRETLTLSYESHVPLG 232

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGE 291
           DG  +    A  E  A +    R ++ + + +L+GPHR D  V +C  A +     S G+
Sbjct: 233 DGTSEAIVAAFSEALATR----RAIEFLQKTSLVGPHRDD--VGFCLNAQSARQFASQGQ 286

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           Q+ +++ + LA   L+ +  G  P+LLLD++ A LD  ++  L  ++ D   Q  MT T 
Sbjct: 287 QRTLVLALKLAELALVESVVGDTPLLLLDDVLAELDLQRQGILLEVMGD-RYQTLMTTTH 345

Query: 352 KSVFDS-LNETAKFMRIS 368
            + F +   + A+ ++++
Sbjct: 346 LAPFAAPWRQQAQILKVT 363


>gi|89101116|ref|ZP_01173952.1| recombination protein F [Bacillus sp. NRRL B-14911]
 gi|89084171|gb|EAR63336.1| recombination protein F [Bacillus sp. NRRL B-14911]
          Length = 372

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 165/371 (44%), Gaps = 25/371 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  +RNY SL + F+ +  + +G N  GKTN++E+I  L+  +  R ++  ++ R
Sbjct: 3   IEQLLLRNYRNYESLEVQFEDKVNVIIGQNAQGKTNVMESIYVLAMAKSHRTSNDKELIR 62

Query: 67  IGSPSFFSTFARVEG--MEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                +   +A++EG   +    + ++L  ++  +  +C   N +  + + +   ++ + 
Sbjct: 63  -----WDEDYAKIEGRVRKNHGPLPMQLVISKKGKKAKC---NHIEQQRLSQYVGNMNVV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFD 179
              P    +  G    RRRF+D  +  + P +   +  + ++++ RN  L    T    D
Sbjct: 115 MFAPEDLHLVKGSPQVRRRFIDMEIGQVSPVYLHDVGQYNKILQQRNHYLKLLQTRKQTD 174

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFD 237
            +    +  Q  E+  +I   R E +  L    M   +        +K+      D    
Sbjct: 175 QAMLEILTEQFIEMAARIVAKRFEFLKLLQKWAMPIHEGISRGLETLKIEYKPSADVSDG 234

Query: 238 QSFCALKEEYAKKL--FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           Q    + + Y +K     GR++D     T+ GPHR DL   Y +       GS G+Q+  
Sbjct: 235 QELSKMIKVYQEKFEKVRGREIDRGV--TMFGPHRDDLAF-YVNGRDVQTFGSQGQQRTT 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            + + LA   LI +  G  PILLLD++ + LD+ +++ L   +     Q F+T T     
Sbjct: 292 ALSLKLAEIELIHSEIGEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGI 350

Query: 356 D--SLNETAKF 364
           D  +L E A F
Sbjct: 351 DHQTLKEAAAF 361


>gi|330961507|gb|EGH61767.1| recombination protein F [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 367

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 161/345 (46%), Gaps = 16/345 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           P+  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PAC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPMQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++E +
Sbjct: 182 ELCLASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
             L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A   L+
Sbjct: 234 TVLASSLNRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           S       I L+D++ + LDE  R AL R++ ++  Q+F+T  D+
Sbjct: 292 SQVRRGQCIYLVDDLPSELDEHHRQALCRLLEELRCQVFITCVDQ 336


>gi|28867246|ref|NP_789865.1| DNA replication and repair protein RecF [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213968439|ref|ZP_03396582.1| DNA replication and repair protein RecF [Pseudomonas syringae pv.
           tomato T1]
 gi|301384273|ref|ZP_07232691.1| recombination protein F [Pseudomonas syringae pv. tomato Max13]
 gi|302063877|ref|ZP_07255418.1| recombination protein F [Pseudomonas syringae pv. tomato K40]
 gi|302131960|ref|ZP_07257950.1| recombination protein F [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|38258486|sp|Q88BK1|RECF_PSESM RecName: Full=DNA replication and repair protein recF
 gi|28850480|gb|AAO53560.1| DNA replication and repair protein RecF [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213926727|gb|EEB60279.1| DNA replication and repair protein RecF [Pseudomonas syringae pv.
           tomato T1]
 gi|330876357|gb|EGH10506.1| recombination protein F [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330964179|gb|EGH64439.1| recombination protein F [Pseudomonas syringae pv. actinidiae str.
           M302091]
 gi|331017723|gb|EGH97779.1| recombination protein F [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 367

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 16/345 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMSTWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++E +
Sbjct: 182 ELCLASDEIDEFRRAYIKALKP-VFEKTLSELVELEGLTLSYYRG--WDK-----EKELS 233

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
             L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A   L+
Sbjct: 234 TVLASSLNRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|254830703|ref|ZP_05235358.1| recombination protein F [Listeria monocytogenes 10403S]
 gi|290892042|ref|ZP_06555039.1| recombination protein F [Listeria monocytogenes FSL J2-071]
 gi|290558636|gb|EFD92153.1| recombination protein F [Listeria monocytogenes FSL J2-071]
          Length = 370

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 162/371 (43%), Gaps = 48/371 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       S+ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q 
Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249
           A++ + +   R + I  L                  +    +  +  +    LK EY A 
Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228

Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
              +G           +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 VTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + I LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  
Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346

Query: 353 SVFDSLNETAK 363
           S  D  +ET K
Sbjct: 347 SGID--HETLK 355


>gi|167038679|ref|YP_001661664.1| recombination protein F [Thermoanaerobacter sp. X514]
 gi|256751452|ref|ZP_05492330.1| DNA replication and repair protein RecF [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300913761|ref|ZP_07131078.1| DNA replication and repair protein RecF [Thermoanaerobacter sp.
           X561]
 gi|307723222|ref|YP_003902973.1| DNA replication and repair protein RecF [Thermoanaerobacter sp.
           X513]
 gi|226737847|sp|B0K0X1|RECF_THEPX RecName: Full=DNA replication and repair protein recF
 gi|166852919|gb|ABY91328.1| DNA replication and repair protein RecF [Thermoanaerobacter sp.
           X514]
 gi|256749671|gb|EEU62697.1| DNA replication and repair protein RecF [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300890446|gb|EFK85591.1| DNA replication and repair protein RecF [Thermoanaerobacter sp.
           X561]
 gi|307580283|gb|ADN53682.1| DNA replication and repair protein RecF [Thermoanaerobacter sp.
           X513]
          Length = 362

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 161/354 (45%), Gaps = 21/354 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRN    ++ F     IF G N  GK+N+LE+I  LS GR FR +   ++ +
Sbjct: 3   VKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTELIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G   F   + +    +   D  I+   + + + + +++N   I+   EL   L      
Sbjct: 63  FGEDYF---YVKAIICQENNDKKIEFGYKKNEN-KVIKVNGNKIKSTSELLGQLLTVIFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183
           P    I       RR++LD  +  ++  +   ++ + +++  RN+LL    EG    S  
Sbjct: 119 PEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMNRNKLLKSIKEGK-SKSIL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQSF 240
              + Q+ E G KI + R   +  +   I ++   +  E    + L+  G  D   ++  
Sbjct: 178 EIFDDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEE-- 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298
             +K+   +KL     +D     T +GPHR D  +I++  D  +   + S G+Q+   + 
Sbjct: 236 -IVKKRLKEKLSKNIDVDLRYFTTQVGPHREDFKIIINGYDSRV---YSSQGQQRTAALC 291

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + L+   ++   T   P+LLLD++ + LDE+++  +   +   G Q F+T T K
Sbjct: 292 LKLSEFEILKKETSEKPVLLLDDVMSELDENRKKYVLERLK--GFQTFITHTTK 343


>gi|229099919|ref|ZP_04230842.1| DNA replication and repair protein recF [Bacillus cereus Rock3-29]
 gi|229118982|ref|ZP_04248327.1| DNA replication and repair protein recF [Bacillus cereus Rock1-3]
 gi|228664507|gb|EEL20003.1| DNA replication and repair protein recF [Bacillus cereus Rock1-3]
 gi|228683534|gb|EEL37489.1| DNA replication and repair protein recF [Bacillus cereus Rock3-29]
          Length = 375

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 170/381 (44%), Gaps = 26/381 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R + ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGAKILQKRFDFLH----LLQEWAAPIHRGISRGLEELEIIYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  SV  
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT--SVDG 349

Query: 357 SLNET---AKFMRISNHQALC 374
             +ET   AK + ++N    C
Sbjct: 350 IEHETLKDAKTIHVTNGTVDC 370


>gi|313625797|gb|EFR95414.1| DNA replication and repair protein RecF [Listeria innocua FSL
           J1-023]
          Length = 370

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 163/374 (43%), Gaps = 48/374 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       ++ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRVVKRGQTVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q 
Sbjct: 126 GAPGVRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPMLLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249
           A++ + +   R + I  L                  +    +  +  +    LK EY A 
Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228

Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
              +G           +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 VTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + + LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  
Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346

Query: 353 SVFD--SLNETAKF 364
           S  D  +LN+   F
Sbjct: 347 SGIDHNTLNQATTF 360


>gi|224498302|ref|ZP_03666651.1| recombination protein F [Listeria monocytogenes Finland 1988]
          Length = 370

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 162/371 (43%), Gaps = 48/371 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       S+ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRIAKHGQSVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q 
Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           A++ + +   R + I  L                  +    +  +  +    LK EY   
Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228

Query: 251 L-FDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           +  +G           +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 ITLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + I LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  
Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346

Query: 353 SVFDSLNETAK 363
           S  D  +ET K
Sbjct: 347 SGID--HETLK 355


>gi|323143412|ref|ZP_08078097.1| putative DNA replication and repair protein RecF [Succinatimonas
           hippei YIT 12066]
 gi|322416817|gb|EFY07466.1| putative DNA replication and repair protein RecF [Succinatimonas
           hippei YIT 12066]
          Length = 359

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 172/354 (48%), Gaps = 30/354 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L IS+FRN   L         +  G NG GK+++LEA+S+L+ GR FR  +Y  + + G 
Sbjct: 6   LVISDFRNLEMLDFKPAPGFNVIYGPNGSGKSSVLEAVSYLALGRSFRGYNYQYLIKNGR 65

Query: 70  PSFFSTFARV-EGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
            S FS FA V E    L D I I     +D  ++   IN   ++ + +L   + +  + P
Sbjct: 66  KS-FSVFASVNENHAALTDNIGIAKGRGEDLQIK---INGSKVQRLIDLVDKICVQIIHP 121

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SSWCS 184
               + +     RR F+D  V+  +P+ +    +++R+++ RN LL     D   S W  
Sbjct: 122 QGIELVTQGPELRRNFIDWGVYYSEPKFKDLWFNYKRVIKQRNILLKSKASDFEISVW-- 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-PHIKLSLTGFLDGKFDQSFCAL 243
             +  ++ L  KI+  R   +  L+  +    Q E F P  K SL   L   +++ F  L
Sbjct: 180 --DDLLSSLSEKIDEFRCSYLEKLNVFLS--AQCEQFLP--KFSLKFELHSGWNKDF-KL 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST---GEQKVVLVGIF 300
           ++  A+ L    + D +   T  G HR+DL +    K+ +++ G+T   G+ K+++  + 
Sbjct: 233 RDLLAQNL----EKDRVLGYTFYGCHRADLKI----KSDSVSAGATLSRGQLKLLVCAMR 284

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           LA   L+ + TG + I L+D++++ LD + +  L   +     Q+F+T   + +
Sbjct: 285 LAQGLLLKHETGRSCIYLIDDLNSELDSNSQKILLENLKQCSCQVFITNISREM 338


>gi|307543592|ref|YP_003896071.1| recombination protein F [Halomonas elongata DSM 2581]
 gi|307215616|emb|CBV40886.1| recombination protein F [Halomonas elongata DSM 2581]
          Length = 371

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 147/349 (42%), Gaps = 19/349 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L     RN  +L L    +  +F+GDNG GKT++LE I  L  GR FR            
Sbjct: 6   LAFQGLRNLQALELSPGPRINLFIGDNGTGKTSLLEGIHVLGMGRSFRTRQLRHAI---- 61

Query: 70  PSFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            +       + G + G   + I +  R D     +++    +  V +L + L +  + P 
Sbjct: 62  -AHEEDGVTLHGRLSGEPPLPIGVRRRRDSDELEMRLAGERVGRVSQLVETLPLQLINPD 120

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR FLD  VF +          F R ++ RN LL  G    +   + E 
Sbjct: 121 AFRLLEGSPAGRREFLDWGVFHVKHDFLDAWKRFRRALKHRNALLRHGRMSDASMGAWER 180

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           ++A  G +++  R   I+A   +  E ++     P ++L      D          K + 
Sbjct: 181 ELAHWGARLDELRRAWIDAFLPVFQETLEGLIALPGLQLRYARGWD---------RKRQL 231

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVGIFLAHARL 306
           A  L   R+ D     T  GP R+DL +    + AI I   S G+QK+V+  + LA  RL
Sbjct: 232 ADVLEQSRETDRQMGFTQQGPQRADLGIRLGRRPAIEIL--SRGQQKLVVSALKLAQGRL 289

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           +   TG + + L+D++ A LD + R      +  +  Q F+T  D +  
Sbjct: 290 LERLTGRSCVYLIDDLPAELDGEHRRVFCEWLAHMRCQAFITSVDPNAL 338


>gi|302185842|ref|ZP_07262515.1| recombination protein F [Pseudomonas syringae pv. syringae 642]
          Length = 367

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 16/345 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  ++ + 
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++E +
Sbjct: 182 ELCLASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EKELS 233

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
             L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A   L+
Sbjct: 234 TVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLV 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 292 SQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|229917452|ref|YP_002886098.1| DNA replication and repair protein RecF [Exiguobacterium sp. AT1b]
 gi|259563366|sp|C4KZZ0|RECF_EXISA RecName: Full=DNA replication and repair protein recF
 gi|229468881|gb|ACQ70653.1| DNA replication and repair protein RecF [Exiguobacterium sp. AT1b]
          Length = 372

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 155/363 (42%), Gaps = 65/363 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  +RNY +L L F  Q  + +G+N  GKTN+LE+I  L+  +  R  +  D 
Sbjct: 1   MHLKSIRLQNYRNYETLELDFSEQTNVLIGENAQGKTNLLESIYVLALAKSHR--TTQDR 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL---------QINDVVIRVVDE 115
             IG   + +  A +EG         ++  R   SV+ L         ++N +  R + +
Sbjct: 59  ELIG---WEADAASIEG---------RIHKRTGESVQSLSFSPKGKKAKLNHLEQRRLSD 106

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-- 173
                 +    P    I  G    RRRFLD  +  + P +   +  + + ++ RN LL  
Sbjct: 107 YVGAFNVVLFAPEDLAIVKGSPQGRRRFLDMEIGQVSPVYLHELNQYLKTLKQRNALLKQ 166

Query: 174 --TEGYFDSSWCSSIEAQMAELGVKINIARVEMINA---------------LSSLIMEYV 216
             T+G  D +    +  Q+ EL VKI + R   I+                L +L ++YV
Sbjct: 167 LSTKG-GDETLLEVLTDQLIELAVKIVMRRYHFIDQLEKWANPIHSGITRDLETLTIQYV 225

Query: 217 ----QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
               QKE F               +Q F    E Y +K    R+ +     TL GPHR D
Sbjct: 226 SDTFQKERFSK-------------EQMF----ETYRQKFDKIRENERRRGVTLFGPHRDD 268

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
             + Y +       GS G+Q+   + + LA   LI    G  P+LLLD++ + LD+ ++ 
Sbjct: 269 FEL-YVNNRNVQTFGSQGQQRTAALSLKLAEIELIHEEVGEYPLLLLDDVLSELDDHRQT 327

Query: 333 ALF 335
            L 
Sbjct: 328 HLL 330


>gi|172056049|ref|YP_001812509.1| DNA replication and repair protein RecF [Exiguobacterium sibiricum
           255-15]
 gi|226737799|sp|B1YGB5|RECF_EXIS2 RecName: Full=DNA replication and repair protein recF
 gi|171988570|gb|ACB59492.1| DNA replication and repair protein RecF [Exiguobacterium sibiricum
           255-15]
          Length = 384

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 165/378 (43%), Gaps = 27/378 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  + +S +RNY SL L F  +  + +G+N  GKTN+LEAI  L+  +  R     ++
Sbjct: 1   MRLDSVRLSHYRNYESLELSFSEKTNVLIGENAQGKTNLLEAIYVLALAKSHRTTHDKEL 60

Query: 65  TRIGSPSFFSTFARVEG----MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            +  + +     ARVEG      G     I + +R  ++    ++N +  R + +    L
Sbjct: 61  IQWDAET-----ARVEGRIHKRRGSHSQEIAISSRGKKA----KLNHLEQRRLSDYVGAL 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-- 178
            I    P    I  G    RRRFLD  +  + P +   +  + ++++ RN LL +     
Sbjct: 112 NIVLFAPEDLHIVKGSPQIRRRFLDMEIGQVSPVYLHELSQYLKVLKQRNALLKQLSMKG 171

Query: 179 -DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQK--ENFPHIKLSLTGFL 232
            D ++   +  QM  L VKI   R   I  L      I E + +  E    I  S T F 
Sbjct: 172 GDETFLDVLTEQMITLAVKIVQRRHHFIAQLEKWARPIHEGISRGQEQLVLIYRSDT-FS 230

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +   D     +   Y +K F   K + + R  TL GPHR D  ++   + +   +GS G+
Sbjct: 231 NDLLD--VEGMTASYMQK-FGKMKTNEIRRGVTLFGPHRDDFEMEVNGRNVQ-TYGSQGQ 286

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           Q+   + + LA   LI    G  P+LLLD++ + LD+ ++  L   +      I  T + 
Sbjct: 287 QRTAALSLKLAEIELIHEEVGEYPLLLLDDVLSELDDHRQTHLLDTMQQKVQTILTTTSV 346

Query: 352 KSVFDSLNETAKFMRISN 369
             +     + AK   +  
Sbjct: 347 DGIAHETIKQAKLFHVKQ 364


>gi|227831833|ref|YP_002833540.1| DNA replication and repair protein [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183097|ref|ZP_06042518.1| recombination protein F [Corynebacterium aurimucosum ATCC 700975]
 gi|254790471|sp|C3PE74|RECF_CORA7 RecName: Full=DNA replication and repair protein recF
 gi|227452849|gb|ACP31602.1| DNA replication and repair protein [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 392

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 171/378 (45%), Gaps = 34/378 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L++ +FR++  L L      T+FVG NG GKTNI+EAI + +     R A  A + R
Sbjct: 3   IRDLDVRDFRSWPELTLRLKPGITLFVGRNGFGKTNIVEAIGYTAHLSSHRVAHDAPLVR 62

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+ +   S  A  +G E  A + IK       +    QIN   ++   EL   ++    
Sbjct: 63  QGAHNARISATAVNQGRELTAHLLIK-----PHAANQAQINRTRLKSPRELLGVVKTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYF 178
            P    +  G    RR++LD ++ +  PR      D++++++ RN LL         GY 
Sbjct: 118 SPEDLSLVRGEPAARRQYLDDIIASRTPRLAGVKADYDKVLKQRNALLKSASPSLRRGYS 177

Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLT 229
           DS   S++      + Q++ LG ++  AR+ +++ L  LI      +  E+ P   +   
Sbjct: 178 DSDGASALATLDVWDTQLSSLGAQVIQARLALVDELRELIPAAYAGLAPESRP-AAIDYK 236

Query: 230 GFLDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG- 287
             +D    +   A+   E A K    R+ +     +L+GPHR DL+++      + A G 
Sbjct: 237 STVDISDREVIEAMMLTELATK----RQREIERGISLVGPHRDDLVLNL---GTSPAKGF 289

Query: 288 -STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE     + + LA   L+    G  PIL+LD++ A LD  +R  L R+       + 
Sbjct: 290 ASHGETWSYAISLRLAEFNLLRQD-GTDPILILDDVFAELDAKRREKLVRLAAGAEQVLI 348

Query: 347 MTGTDKSVFDSLNETAKF 364
               D+ +  +L    +F
Sbjct: 349 TAAVDEDLPGNLQPIERF 366


>gi|226356387|ref|YP_002786127.1| recombination protein F [Deinococcus deserti VCD115]
 gi|259563361|sp|C1CW06|RECF_DEIDV RecName: Full=DNA replication and repair protein recF
 gi|226318377|gb|ACO46373.1| putative DNA replication and repair protein RecF [Deinococcus
           deserti VCD115]
          Length = 363

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 156/365 (42%), Gaps = 41/365 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L+   +RN A   L F A  T   G+NG GKTN+LEA      G         DV
Sbjct: 4   VQLESLSTLNYRNLAPCTLSFPAGVTGVFGENGAGKTNLLEAAYLALTG-------LTDV 56

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---------RCLQINDVVIRVVDE 115
           TR+           V+  EG A +   LE+    S+         R L+++ V +R  D 
Sbjct: 57  TRLEQ--------LVQSGEGEAYVRADLESGGSLSIQEVGLGRGRRQLKVDGVRVRAGD- 107

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L +   + W+ P    +  G    RR FLD ++  +  R+ +++  ++R +  RN  L  
Sbjct: 108 LPRGSAV-WIRPEDSELVFGSPSGRRNFLDALLSRLSARYAQQLARYDRTVSQRNAALRS 166

Query: 176 GYFDSSWCSSI-EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           G     W   + +  + +LG  I + R   +  LS L  E    E     K  + G    
Sbjct: 167 G---EEWAMHVWDDALVKLGSDIMLFRRRALTRLSELAAE--ANEALGSRKPLVLGL--- 218

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
               S     E YA  L   R  +     T  GPHR DL +   D   T  + S GE + 
Sbjct: 219 ----SESTTPETYAHDLRSRRAEELARGSTATGPHRDDLTMTLGDFPAT-EYASRGEGRT 273

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           + + +  A   L++   G  P+LL+D+ SA LD  +R  L  +   +  Q  +TGT+++ 
Sbjct: 274 IALALRRAELELLAERFGEKPVLLIDDFSAELDPTRRAFLLDLAASV-PQAIVTGTEQAP 332

Query: 355 FDSLN 359
             +L 
Sbjct: 333 GAALT 337


>gi|184154480|ref|YP_001842820.1| recombination protein F [Lactobacillus fermentum IFO 3956]
 gi|226737808|sp|B2GEV1|RECF_LACF3 RecName: Full=DNA replication and repair protein recF
 gi|183225824|dbj|BAG26340.1| DNA replication and repair protein RecF [Lactobacillus fermentum
           IFO 3956]
          Length = 373

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 164/357 (45%), Gaps = 21/357 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +S +RNY  L + F     + +G+N  GKTN+LEAI  L+  +  R A   D   
Sbjct: 3   LQELQLSHYRNYEELAVTFAPGINVLIGENAQGKTNLLEAIYLLAFTKSHRTAK--DREL 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           IG   +    ARV G+   A   + LE +   S + +++N +  + +     +L +    
Sbjct: 61  IG---WHQKLARVSGVVERASGRLPLEVQISTSGKRVKVNHLFQKRLSTYVGNLNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182
           P    +  G  + RR+F+D     +  ++   +  F + +  RN  L +  +    D   
Sbjct: 118 PEDLALVKGAPVNRRQFMDMEFGQMSSKYLYNVSRFNQQLAQRNAYLRQFKYGQQSDRIL 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFPHIKLSLTGFLDGKFD 237
              I  Q+A +G ++ +AR +++  L     E       QKE      +S     D   +
Sbjct: 178 LGVITDQLASVGGEVVVARQQLVKRLGKWAAELHHHISKQKEELSLQYVSQVEVDDQTTE 237

Query: 238 QSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           +   A L+  Y++   + R+++  +  +LIGP R D+      + +    GS G+Q+   
Sbjct: 238 EEAVAQLRRLYSEN--EEREIEHGT--SLIGPQRDDIHFIVNGQNVQ-RFGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           + + LA   L+   TG  P+LLLD++ + LD+D++  L   + D   Q F+T T  S
Sbjct: 293 LAVKLAEIDLMKEQTGEYPLLLLDDVLSELDDDRQTHLLTAIQD-KVQTFITTTSLS 348


>gi|16802053|ref|NP_463538.1| recombination protein F [Listeria monocytogenes EGD-e]
 gi|46906229|ref|YP_012618.1| recombination protein F [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47097287|ref|ZP_00234845.1| DNA replication and repair protein RecF [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224503072|ref|ZP_03671379.1| recombination protein F [Listeria monocytogenes FSL R2-561]
 gi|226222644|ref|YP_002756751.1| RecF protein [Listeria monocytogenes Clip81459]
 gi|254824775|ref|ZP_05229776.1| recombination protein F [Listeria monocytogenes FSL J1-194]
 gi|254827429|ref|ZP_05232116.1| recombination protein F [Listeria monocytogenes FSL N3-165]
 gi|254851837|ref|ZP_05241185.1| recombination protein F [Listeria monocytogenes FSL R2-503]
 gi|254899681|ref|ZP_05259605.1| recombination protein F [Listeria monocytogenes J0161]
 gi|254913116|ref|ZP_05263128.1| DNA replication and repair protein RecF [Listeria monocytogenes
           J2818]
 gi|254937497|ref|ZP_05269194.1| recombination protein F [Listeria monocytogenes F6900]
 gi|255520065|ref|ZP_05387302.1| recombination protein F [Listeria monocytogenes FSL J1-175]
 gi|284803261|ref|YP_003415126.1| recombination protein F [Listeria monocytogenes 08-5578]
 gi|284996402|ref|YP_003418170.1| recombination protein F [Listeria monocytogenes 08-5923]
 gi|300763381|ref|ZP_07073379.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL
           N1-017]
 gi|20978583|sp|Q8YAV8|RECF_LISMO RecName: Full=DNA replication and repair protein recF
 gi|51316269|sp|Q725G6|RECF_LISMF RecName: Full=DNA replication and repair protein recF
 gi|259563663|sp|C1L302|RECF_LISMC RecName: Full=DNA replication and repair protein recF
 gi|16409364|emb|CAC98220.1| RecF protein [Listeria monocytogenes EGD-e]
 gi|46879493|gb|AAT02795.1| DNA replication and repair protein RecF [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47014332|gb|EAL05307.1| DNA replication and repair protein RecF [Listeria monocytogenes
           str. 1/2a F6854]
 gi|225875106|emb|CAS03794.1| RecF protein [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258599807|gb|EEW13132.1| recombination protein F [Listeria monocytogenes FSL N3-165]
 gi|258605129|gb|EEW17737.1| recombination protein F [Listeria monocytogenes FSL R2-503]
 gi|258610099|gb|EEW22707.1| recombination protein F [Listeria monocytogenes F6900]
 gi|284058823|gb|ADB69764.1| recombination protein F [Listeria monocytogenes 08-5578]
 gi|284061869|gb|ADB72808.1| recombination protein F [Listeria monocytogenes 08-5923]
 gi|293591118|gb|EFF99452.1| DNA replication and repair protein RecF [Listeria monocytogenes
           J2818]
 gi|293594014|gb|EFG01775.1| recombination protein F [Listeria monocytogenes FSL J1-194]
 gi|300515658|gb|EFK42707.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL
           N1-017]
          Length = 370

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 162/371 (43%), Gaps = 48/371 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       S+ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q 
Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           A++ + +   R + I  L                  +    +  +  +    LK EY   
Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228

Query: 251 L-FDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           +  +G           +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 ITLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + I LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  
Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346

Query: 353 SVFDSLNETAK 363
           S  D  +ET K
Sbjct: 347 SGID--HETLK 355


>gi|314934957|ref|ZP_07842316.1| DNA replication and repair protein RecF [Staphylococcus caprae C87]
 gi|313652887|gb|EFS16650.1| DNA replication and repair protein RecF [Staphylococcus caprae C87]
          Length = 371

 Score = 99.0 bits (245), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 169/384 (44%), Gaps = 29/384 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEEVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F + +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IR-----FKADYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSKLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTG 230
           +    +  Q A+  +K+ + R   I  L  L            E +  +  P +KLS   
Sbjct: 176 TMLEVLNQQFAQYALKVTLRREHFIKELEELAQPIHSGITNEREKLGLKYLPSLKLS--- 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                +++    L EE  + L D  + +      L GPHR DL  +  +      +GS G
Sbjct: 233 ----DYEKEESELLEEVIELLNDNLQREKERGVCLYGPHRDDLGFN-VNGMDAQTYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T
Sbjct: 288 QQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTT 346

Query: 351 DKSVFD-SLNETAKFMRISNHQAL 373
                D  +   AK  RIS  + L
Sbjct: 347 SVDGIDHEIMNNAKLYRISQGELL 370


>gi|217965930|ref|YP_002351608.1| DNA replication and repair protein RecF [Listeria monocytogenes
           HCC23]
 gi|254790481|sp|B8DAQ5|RECF_LISMH RecName: Full=DNA replication and repair protein recF
 gi|217335200|gb|ACK40994.1| DNA replication and repair protein RecF [Listeria monocytogenes
           HCC23]
 gi|307569528|emb|CAR82707.1| DNA replication and repair protein [Listeria monocytogenes L99]
          Length = 370

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 158/364 (43%), Gaps = 46/364 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       S+ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q 
Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249
           A++ + +   R + I  L                  +    +  +  +    LK EY A 
Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228

Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
              +G           +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 VTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + I LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  
Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346

Query: 353 SVFD 356
           S  D
Sbjct: 347 SGID 350


>gi|330470836|ref|YP_004408579.1| recombination protein F [Verrucosispora maris AB-18-032]
 gi|328813807|gb|AEB47979.1| recombination protein F [Verrucosispora maris AB-18-032]
          Length = 377

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 165/363 (45%), Gaps = 36/363 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR+Y  + +  +    I +G NGVGKTN++EA+ +++     R A+ A + R
Sbjct: 3   VRRLELVDFRSYERVGVDLEPGPNILIGANGVGKTNLVEALGYVATLDSHRVATDAPLVR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +G+ +     A V EG E    + ++LE    ++ R         R  D L   LR+   
Sbjct: 63  MGATAAVIRCAVVHEGRE----LLVELEIVPGKANRARLGRSPARRARDVLGA-LRLVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178
            P    +  G   ERRR+LD ++    PR+     D++R+++ RN LL   Y        
Sbjct: 118 APEDLELVRGDPAERRRYLDDLLVLRQPRYAGVRADYDRVVKQRNALLRTAYLARKTGGT 177

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----------PHIK 225
              D S  +  +  +A  G ++   R+E++ AL+  + +                 P ++
Sbjct: 178 RGGDLSTLAVWDTHLARHGAELLAGRLELVAALTPHVAKAYDAVAAGRGAAAIAYRPSVE 237

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           L+     +   D+    L +  A  L + R  +     TL+GPHR DL ++         
Sbjct: 238 LT-----EPTTDRE--TLAKVLAAALEEQRSAEIERGTTLVGPHRDDLTLNLGPLPAK-G 289

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           + S GE     + + LA   L+ N  G  P+L+LD++ A LD  +R+ L  +V    SQ+
Sbjct: 290 YASHGESWSYALALRLAGYDLLRND-GIEPVLVLDDVFAELDAGRRDRLADLVGG-ASQL 347

Query: 346 FMT 348
            +T
Sbjct: 348 LVT 350


>gi|317495091|ref|ZP_07953462.1| DNA replication and repair protein RecF [Gemella moribillum M424]
 gi|316914798|gb|EFV36273.1| DNA replication and repair protein RecF [Gemella moribillum M424]
          Length = 380

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 170/384 (44%), Gaps = 32/384 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ L +  FRNY SL +       IF GDN  GKTNI+E+I  LS G+ +R  S  + 
Sbjct: 1   MKIRELKLLYFRNYTSLNIATHPSLNIFFGDNANGKTNIVESIFCLSLGKSYRTKSDTEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +   +    +  + L DI + +  +     +  +I  +    + E    L +  
Sbjct: 61  IMFGEDAAAMSCVLNKNNKNL-DIMLGISNKG----KSAKIAGIKKNKLTEFVGELNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P   +I  G    RR F++R  +     + +  + ++ L++ RN  L +   +     
Sbjct: 116 FSPEDLQIVKGSPSLRREFINREFYQFSRIYHKYHLMYQHLLKQRNSYLKDMKKNPKDEI 175

Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSL-------------IMEYVQKENFPHIK 225
             ++  ++ +Q+ ++ + I   RV  +  ++ L             I+E   K +   + 
Sbjct: 176 SLTYLETLTSQLVKIAMYITRERVSFVKDIAKLAYENMLNISNGNEILEIKYKSSILDV- 234

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           L ++   D KF +    + E   KK FD    D M   T IGPH+ DL   + +      
Sbjct: 235 LGVSSVSDAKFSEE--NIVELMMKKSFD----DIMRGNTKIGPHQDDLEF-FINNLEART 287

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           + S G+Q+ +++ + L+    +   TG  PILLLD++ + LD++++  L   + +     
Sbjct: 288 YASQGQQRSIVLSLKLSEIHYLKQKTGDYPILLLDDVLSELDKNRQLKLLDAIDENVQTF 347

Query: 346 FMTGTDKSVFDSLNETAKFMRISN 369
             T +   + + L E AK  +I N
Sbjct: 348 ITTPSITDIKEDLLEKAKVFKIDN 371


>gi|292669296|ref|ZP_06602722.1| recombination protein F [Selenomonas noxia ATCC 43541]
 gi|292649137|gb|EFF67109.1| recombination protein F [Selenomonas noxia ATCC 43541]
          Length = 373

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 165/377 (43%), Gaps = 45/377 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L++  +RNY  L L FD    IF+G N  GKTNI+EA+ + + GR  R +S A++
Sbjct: 1   MQITELSLRSYRNYEDLALGFDDGAQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G                 A I ++    D              R ++   ++LR   
Sbjct: 61  IRMGDDG--------------AHIGLRFVRHDVPRELSFTFQRGARRRIEYAGENLRQRD 106

Query: 125 LV---------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           LV         P    +  G    RRR+LD  +    P +   ++ +  ++R R  +L +
Sbjct: 107 LVGILPMVLFSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTHILRQRGAVLKD 166

Query: 176 -----GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
                   D+   W + + A+ A   V   IA V  + ALS+ +   +        +L+L
Sbjct: 167 IRERLAPVDALLPWDAQL-ARSAAWIVTRRIAAVADLGALSTRVQAVLADGE----ELTL 221

Query: 229 TGFLDGKFDQSFCALKEEYAKK--------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
           +  + G  D+     KE  A++        L + R  D +   T  GPH  DL++   D 
Sbjct: 222 SYEIAGA-DEDVPGAKEGMAQRLELWYNEMLIENRARDIVRAATGTGPHLDDLVL-RVDG 279

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
               ++GS G+Q+   + + +A    +   T  APILLLD++ + LD D+R AL   +  
Sbjct: 280 MSLRSYGSQGQQRTGALALKIAELFYLREKTSEAPILLLDDVMSELDADRRRALLDFIRC 339

Query: 341 IGSQIFMTGTDKSVFDS 357
              Q F+T TD + F +
Sbjct: 340 ERIQTFITATDAAYFPA 356


>gi|291482373|dbj|BAI83448.1| recombination protein F [Bacillus subtilis subsp. natto BEST195]
          Length = 370

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 162/368 (44%), Gaps = 49/368 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +S +RNY    L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++ R
Sbjct: 3   IQNLELSSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   +A++EG     + +I ++    +  +  ++N +  + + +    L      
Sbjct: 63  -----WDKDYAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RRRFLD  +  + P +   +  +++++  RN  L    T    D + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDRTM 177

Query: 183 CSSIEAQMAELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIKLS 227
              +  Q+ E+  K+ + R++                   L  L ++Y       H  L 
Sbjct: 178 LDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKY-------HTALD 230

Query: 228 LTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           ++  LD       + ++F  L+E+  ++             TL GPHR D++  Y +   
Sbjct: 231 VSDPLDLSKIGDSYQEAFSKLREKEIERGV-----------TLSGPHRDDVLF-YVNGRD 278

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              +GS G+Q+   + + LA   LI    G  PILLLD++ + LD+ +++ L   +    
Sbjct: 279 VQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-R 337

Query: 343 SQIFMTGT 350
            Q F+T T
Sbjct: 338 VQTFVTTT 345


>gi|227889154|ref|ZP_04006959.1| recombination protein F [Lactobacillus johnsonii ATCC 33200]
 gi|227850383|gb|EEJ60469.1| recombination protein F [Lactobacillus johnsonii ATCC 33200]
          Length = 374

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 160/356 (44%), Gaps = 32/356 (8%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           + +FRN+  L++ FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++ R G   
Sbjct: 8   LKDFRNFEELKINFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKELIRFG--- 64

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             S FA ++G    + + ++L+ R   + +   +N +  + +      +      P    
Sbjct: 65  --SKFAGLQGKVHKSQLEVELKLRLTPNGKKAWVNRLEQKKLSAYVGQMNAILFSPEDLA 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187
           +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D  +   + 
Sbjct: 123 LVKGAPSTRRRFMDLEFGQINSEYLYFLSQYRQVLQQRNNYLKQLSIKKANDLVFLDVLS 182

Query: 188 AQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTGFLDGKFD 237
            Q+A +  +I   R++ I  L+S             E +Q    P +K  +T   D   +
Sbjct: 183 DQLAGIAAEIISRRIKYIKKLNSYAQSAHSEISGQAEKLQIFYRPSVK-EITP--DDDVE 239

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVV 295
             +  +   Y K     R  +     TL GPHR DL     DK    AH   S G+Q+ +
Sbjct: 240 TIYQKVITSYKK----NRPNEIRKGTTLSGPHRDDLDFLINDKN---AHDFASQGQQRTI 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + + LA  +L+   T   PILLLD++ + LD  ++++L   +    +Q F+T TD
Sbjct: 293 SLSVKLAEIQLVHELTQEYPILLLDDVMSELDNRRQSSLLNYIHG-KTQTFITTTD 347


>gi|326390361|ref|ZP_08211920.1| DNA replication and repair protein RecF [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993638|gb|EGD52071.1| DNA replication and repair protein RecF [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 362

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 161/354 (45%), Gaps = 21/354 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRN    ++ F     IF G N  GK+N+LE+I  LS GR FR +   ++ +
Sbjct: 3   VKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTELIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G   F   + +    +   D  I+   + + + + +++N   I+   EL   L      
Sbjct: 63  FGEDYF---YVKAIICQENNDKKIEFGYKKNEN-KVIKVNGNKIKSTSELLGQLLTVIFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183
           P    I       RR++LD  +  ++  +   ++ + +++  RN+LL    EG    S  
Sbjct: 119 PEDLNIIKEGPSYRRKYLDSCISVVEKNYLYNLMQYNKILINRNKLLKTIKEGK-SRSIL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQSF 240
              + Q+ E G KI + R   +  +   I ++   +  E    + L+  G  D   ++  
Sbjct: 178 EVFDDQLVEYGAKIIVVRQSYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEEIV 237

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298
               +E   K  D   +D     T +GPHR D  +I++  D  +   + S G+Q+ V + 
Sbjct: 238 KKRLKEKLLKNID---LDLKYLTTQVGPHREDFKIIINGYDSRV---YSSQGQQRTVALC 291

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + L+   ++   TG  PILLLD++ + LDE+++  +   +   G Q F+T T K
Sbjct: 292 LKLSEFEILKKETGEKPILLLDDVMSELDENRKKYILERLQ--GFQTFITHTTK 343


>gi|291457886|ref|ZP_06597276.1| RecF protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419430|gb|EFE93149.1| RecF protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 379

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 157/350 (44%), Gaps = 16/350 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  FRNY +L L       I  G+N  GKTN+LEAI      + +R     D+
Sbjct: 1   MQIDSLELQNFRNYENLSLHLCRGSNILYGENAQGKTNLLEAIFMACTAKSYRFTKDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G         ++   +G A   I +  + ++S + + I+++ IR   EL     I  
Sbjct: 61  IRFGEEE---AHIKLILRKGSAPYRIDMHLKRNQS-KGIAIDEIPIRRASELFGIANIVC 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +     + RRRFLD  +  ++  + + +  + R++  RNRLL +  F +    
Sbjct: 117 FSPEDLSLIKDGPVVRRRFLDLELCQLNRGYLQELGRYGRILNQRNRLLRDIPFKAGLLD 176

Query: 185 SI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           ++   + Q+   G+ +   R   +  LS +I E        H +LS  G    + D    
Sbjct: 177 TLSVWDEQLLSSGIALIEIRSAFMKRLSPIISEI-------HGRLS-GGREKIEVDYEPN 228

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
              E + KKL   R+ +     +L GPHR D+      + I    GS G+Q+   + + L
Sbjct: 229 VKAENFRKKLSLLRESELKQHLSLAGPHRDDISFRIDGRDIR-KFGSQGQQRTAALALKL 287

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           +   L+       PILLLD++ + LD  ++N L +I+ D  + I  TG D
Sbjct: 288 SEIELVREMIDDTPILLLDDVLSELDSARQNYLLKILKDTQNIISCTGLD 337


>gi|227514122|ref|ZP_03944171.1| recombination protein F [Lactobacillus fermentum ATCC 14931]
 gi|260662541|ref|ZP_05863436.1| DNA replication and repair protein RecF [Lactobacillus fermentum
           28-3-CHN]
 gi|227087493|gb|EEI22805.1| recombination protein F [Lactobacillus fermentum ATCC 14931]
 gi|260553232|gb|EEX26175.1| DNA replication and repair protein RecF [Lactobacillus fermentum
           28-3-CHN]
 gi|299782688|gb|ADJ40686.1| DNA replication and repair protein recF [Lactobacillus fermentum
           CECT 5716]
          Length = 373

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 164/357 (45%), Gaps = 21/357 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +S +RNY  L + F     + +G+N  GKTN+LEAI  L+  +  R A   D   
Sbjct: 3   LQELQLSHYRNYEELAVTFAPGINVLIGENAQGKTNLLEAIYLLAFTKSHRTAK--DREL 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           IG   +    ARV G+   A   + LE +   S + +++N +  + +     +L +    
Sbjct: 61  IG---WHQKLARVSGVVERASGRLPLEVQISTSGKRVKVNHLFQKRLSTYVGNLNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182
           P    +  G  + RR+F+D     +  ++   +  F + +  RN  L +  +    D   
Sbjct: 118 PEDLALVKGAPVNRRQFMDMEFGQMSSKYLYNVSRFNQQLAQRNAYLRQFKYGQQSDRIL 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFPHIKLSLTGFLDGKFD 237
              I  Q+A +G ++ +AR +++  L     E       QKE      +S     D   +
Sbjct: 178 LGVITDQLASVGGEVVVARQQLVKRLGKWAAELHHHISKQKEELSLQYVSQVEVDDQTTE 237

Query: 238 QSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           +   A L+  Y++   + R+++  +  +LIGP R D+      + +    GS G+Q+   
Sbjct: 238 EEAVAQLRRLYSEN--EEREIEHGT--SLIGPQRDDIHFIVNGQNVQ-RFGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           + + LA   L+   TG  P+LLLD++ + LD+D++  L   + D   Q F+T T  S
Sbjct: 293 LAVKLAEIDLMKEQTGEYPLLLLDDVLSELDDDRQTHLLTAIQD-KVQTFITTTSLS 348


>gi|261368841|ref|ZP_05981724.1| DNA replication and repair protein RecF [Subdoligranulum variabile
           DSM 15176]
 gi|282569111|gb|EFB74646.1| DNA replication and repair protein RecF [Subdoligranulum variabile
           DSM 15176]
          Length = 367

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 167/376 (44%), Gaps = 23/376 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +++ RN A   L  D   T+  G NG GKTN+LEA+  L+ G+ FR A  A++
Sbjct: 1   MRLEHLELTDHRNIAHAVLDPDPNLTVLCGPNGQGKTNLLEAVWLLTGGKSFRGAKDAEL 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   S    F   +G E    +++  +    R  R  ++N V       L  + +  
Sbjct: 61  IRRGCEFSVLEGFFETDGSEKTIRLTVGAKG-SQRPGRTAKLNGVDQGRAAALAGNFQAV 119

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P +  +  G    RRRFLD  +  +   +   +  + RL+  +N LL       +  
Sbjct: 120 VFEPDLLALVKGGPEGRRRFLDSALCQVFRPYLVALRRYMRLVAQKNALLKSYDITPNGA 179

Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
             ++A   Q+A+ G +I   R + + AL+         +N+  I      F         
Sbjct: 180 LLLDAYNEQLAQYGGQIMAHRQKFVEALAP-----AAAQNYAEISHGAEEF---SLRYQC 231

Query: 241 C---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           C      +  A+KL   R  +  +   L GPHR DL +    +   I  GS G+Q+  ++
Sbjct: 232 CAAAPTADALAEKLAALRSAELRAGFCLTGPHREDLDLQLDGQPARI-FGSQGQQRSCVL 290

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-QIFMTGTDKSVFD 356
            + LA A ++    G  P+LLLD++ + LD+D++  L   +T +G  Q  +T  D + F 
Sbjct: 291 AMKLAEATVVGEFFGQHPVLLLDDVLSELDDDRQTYL---LTRMGEHQTIVTTCDTAAFA 347

Query: 357 SLNETAKFMRISNHQA 372
             N   K + +   QA
Sbjct: 348 RTN--GKIVYVKGGQA 361


>gi|257466632|ref|ZP_05630943.1| RECF protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917786|ref|ZP_07914026.1| DNA replication and repair protein recF [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691661|gb|EFS28496.1| DNA replication and repair protein recF [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 364

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/356 (21%), Positives = 169/356 (47%), Gaps = 21/356 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + ++  RN  +  ++  +   +F G NG GKT+ILEAI F + G  FR    +++
Sbjct: 1   MKVLSIQLNHVRNLKNQEIIISSPIQVFYGKNGQGKTSILEAIYFAATGLSFRTKHSSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR----SVRCLQINDVVIRVVDELNKHL 120
            R    +   +    +       +S+ +E    +      +  Q+         E   +L
Sbjct: 61  IRYTKNTLSCSLGYQDQFSK-KSLSVSIENEKKQFFFLGKKISQM---------EFYGNL 110

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            + + +P    + +G    RR F+DR +  I+  + +++  F  L++ RN+ L E  + +
Sbjct: 111 NVIYYIPEDVMLINGSPSVRRLFMDREISQINVFYLQQLKKFSHLLKIRNKYLKEKLYQN 170

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ----KENFPHIKLSLTGFLDGKF 236
                 E +  E G  +   R   +  +SS I    Q    KE    ++L    F++ + 
Sbjct: 171 EEFLIYEKEFVECGSYLIEQRNHYLQLMSSFIKNIYQDLFDKE--KELQLQYKTFIEFQN 228

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           D +   ++EE+ K++   ++ +     +++GPH+ + I    ++     + S GE+K ++
Sbjct: 229 DVTLSKIQEEFWKEIKKKKEKEIQYGFSMVGPHKDEFIF-LLERQDAKLYASQGEKKSII 287

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
             + L+   ++S      PI+L+D+++++ DE++ +++ + + +   Q+F+T T++
Sbjct: 288 FSLKLSEIDILSKNKKEMPIVLIDDVTSYFDEERCHSVLQYLYEKKVQVFITSTER 343


>gi|227328543|ref|ZP_03832567.1| recombination protein F [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 361

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 159/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRVIRHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P F     R++G E    + +    + D  VR   I+      V EL + L I  + P  
Sbjct: 66  PEFV-LHGRIDGTETERSVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +P       + +RL+R RN  L +  ++    +W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFAAWSNMKRLLRQRNAALRQVSHYGQLRAW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R +   A+++ I      +  P   LS + F  G   +S      E
Sbjct: 178 DQELVPLAERISEWRAQYSAAIANDIAATC-TQFLPEFSLSFS-FQRGWDKES------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D M   T +GPH++D  +     A+     S G+ K+++  + LA    
Sbjct: 230 YAELLERQFERDRMLGYTALGPHKADFRIRASGVAVEDML-SRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++  + + + D + E  K  
Sbjct: 289 LTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMIGEKGKMF 348

Query: 366 RISN 369
           R+  
Sbjct: 349 RVEQ 352


>gi|116490130|ref|YP_809653.1| DNA replication and repair protein RecF [Oenococcus oeni PSU-1]
 gi|290889524|ref|ZP_06552614.1| hypothetical protein AWRIB429_0004 [Oenococcus oeni AWRIB429]
 gi|122277679|sp|Q04HR3|RECF_OENOB RecName: Full=DNA replication and repair protein recF
 gi|116090855|gb|ABJ56009.1| DNA replication and repair protein RecF [Oenococcus oeni PSU-1]
 gi|290480722|gb|EFD89356.1| hypothetical protein AWRIB429_0004 [Oenococcus oeni AWRIB429]
          Length = 373

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 158/356 (44%), Gaps = 29/356 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRNY SL++ F     + +GDN  GKTN+LEAI  LS  R  R  +  D+     
Sbjct: 6   LKLKDFRNYKSLQVDFSNSINVLIGDNAQGKTNLLEAIYILSMARSHRDNNDRDLI---- 61

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            ++ S F+ + G          LE R  R+ + + +N +    + +   +L      P  
Sbjct: 62  -NWSSDFSDITGEVQSKMGKFPLEVRITRTGKKVFVNHLTENRLSDYIGNLHTVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-------TEGYFDSSW 182
             +  G    RR+F+D     +   +   ++ +  +++ RN  L            D  +
Sbjct: 121 LDLVKGSPGVRRKFIDSEFGQMSANYLFNLLQYRSVLKNRNAYLKNIKWIGNNPKIDEDY 180

Query: 183 CSSIEAQMAELGVKINIARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
              +  Q+ + G +I   R  ++  L   S  I + + +     IK +    +D   DQS
Sbjct: 181 LKVLNDQLIDFGSEIIFQRFVLVKELEKYSYQIHKAISRNEKLTIKYASFSGID---DQS 237

Query: 240 FCALKEEYAKKLFDGRKMDSMSRR-----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
               KEE + K+F+ + + + +R      T +GPH  DL      K +  +  S G+Q+ 
Sbjct: 238 ---TKEEIS-KIFNNQLLKNKTRELFLKSTSVGPHHDDLKFSINGKEVG-SFASQGQQRT 292

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
             + + LA   ++   TG  PILLLD++ + LD D++  L   + D   Q F+T T
Sbjct: 293 TALSVRLAEIEMMKYETGEYPILLLDDVLSELDGDRQTQLLNFIQD-KVQTFLTTT 347


>gi|313887210|ref|ZP_07820906.1| DNA replication and repair protein RecF [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332300489|ref|YP_004442410.1| DNA replication and repair protein recF [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923439|gb|EFR34252.1| DNA replication and repair protein RecF [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332177552|gb|AEE13242.1| DNA replication and repair protein recF [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 371

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 163/363 (44%), Gaps = 35/363 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  F+N A+    F  +   F G NG+GKTN+L+AI +LS  RG    +     R G+
Sbjct: 6   LSVINFKNVATANCHFAPKLNCFFGGNGMGKTNLLDAIHYLSVVRGHLGTTDRYAIRQGA 65

Query: 70  PSFFSTFARVEGM----EGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  A ++G     +G  D IS+++ T  +RS +  +   +  R  D + ++  +  
Sbjct: 66  QE-----AIIQGEYLWDDGQEDKISLRIST--ERSKQLSRNGRLYKRHSDHIGRY-PLVI 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P   R+  G S ERRR +DR++   D  +   +I++ R +  RN +L     + +   
Sbjct: 118 ISPHDQRLIRGGSDERRRSVDRILSQQDATYLANLINYNRALDQRNNMLRNQIHEPALMD 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSFC 241
            +E  +A  G+ +   R   +  L            F  I   L   ++     F     
Sbjct: 178 ILEETLATTGLAVTTMRQAYVEELVP---------TFDQIYQHLAAGVERAVLSFSAGSA 228

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD---LIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  EE  + L +GR+ D     T  G HR D   L+ +   + I    GS G+ K  L+ 
Sbjct: 229 STAEEQLRILRNGRQRDYEYGFTATGCHRDDFEMLLGEILMRKI----GSEGQNKTYLIA 284

Query: 299 IFLAHARLISN--TTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVF 355
             LA  R +    T   AP+LLLD+I   LD D+   +  +V TD   QIF+T T++   
Sbjct: 285 YKLAEYRYLQQHLTNQTAPLLLLDDIFDKLDSDRVERIIELVATDTFGQIFITDTNRKYL 344

Query: 356 DSL 358
           D +
Sbjct: 345 DEI 347


>gi|159027176|emb|CAO86808.1| recF [Microcystis aeruginosa PCC 7806]
          Length = 375

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 182/379 (48%), Gaps = 52/379 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNYA   L F+++ TI +G+N  GK+N+LEAI  L+  +  R +   D+  
Sbjct: 3   LEHLHLHSFRNYAEQLLKFESKKTILLGNNAQGKSNLLEAIELLATLKSHRVSKDRDLV- 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           + S S    FARV  + G +++S+ L +   R+         VIR    L +HL    ++
Sbjct: 62  LESDSEARIFARVNRLYGASELSLILRSSGRRT---------VIRDRQPLRRHLDFLGVI 112

Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175
            ++   FS L ++        RR +LD ++  ++P +   +  + +++R RN LL E   
Sbjct: 113 NAVQ--FSSLDLDLVRGGPEARRDWLDTLLIQLEPLYVHILQQYNQVLRQRNALLKEIRK 170

Query: 176 ------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKE 219
                  Y D S     + Q+AE G ++   R  ++  L  L            EY++ +
Sbjct: 171 QELEGKVYADLSQLKLWDLQLAETGSRVTRRRARVLQRLIPLAQKWHESISGKTEYLELQ 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC- 278
             P++            +     ++  +  K+   R  +     +++GPHR +  VD+  
Sbjct: 231 YIPNVPW---------VEDDVNGVQTAFLDKIETRRLAEKQLGTSVVGPHRDE--VDFLI 279

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           ++    ++GS G+Q+ +++ + LA  +L+    G  P+LLLD++ A LD +++N L   +
Sbjct: 280 NQNPAKSYGSQGQQRTLVLALKLAELQLLEQIIGEPPLLLLDDVLAELDIERQNQLLDAI 339

Query: 339 TDIGSQIFMTGTDKSVFDS 357
            D   Q  +T T  S F+S
Sbjct: 340 ED-RFQTLITTTHLSSFES 357


>gi|284052471|ref|ZP_06382681.1| recombination protein F [Arthrospira platensis str. Paraca]
          Length = 379

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 180/363 (49%), Gaps = 20/363 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++ +FRNY +  + FDA  TI VG+N  GK+N+LEA+  LS  +  R     D+  
Sbjct: 3   LKTLHLRQFRNYEAQDVAFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRVNRDRDLV- 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLRISWL 125
           + + +     A +E      D+++ L ++  R+V    IN   V R +D L+    + + 
Sbjct: 62  LDNHAIAQITATLERDSSTLDLALTLRSQGRRTV---AINGQSVKRHLDFLSILNVVQFS 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
              +D +  G   ERR +LDR++  ++P +   +  + +++R RN LL  G    +    
Sbjct: 119 SLDLD-LVRGSPAERRHWLDRLLIQLEPVYAYMLDQYNQVLRQRNALLKRGPMGGTTPEE 177

Query: 186 I---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD----GKFDQ 238
           +   +AQ+A  G ++   R  +I  L  L   + Q  +     L++T   +     K  Q
Sbjct: 178 LAVWDAQLAVTGARVLRRRDRVIERLEPLARMWHQSISGSSETLNITYQPNIEPPCKPQQ 237

Query: 239 SFCALKEEYAKKLF----DGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            +     E  ++ F      R +   S+  TL+GPHR D+I    ++     +GS+G+Q+
Sbjct: 238 RWSRWPPEQVQQAFLTKISTRAIAERSQGLTLVGPHRDDVIFT-INQTPARQYGSSGQQR 296

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            +++ + LA  +LI +  G  P+LLLD++ A LD  ++N L + +++   Q  +T T   
Sbjct: 297 TLVLALKLAELQLIESVIGEPPLLLLDDVLAELDPHRQNQLLQAISE-RFQTLITTTHLG 355

Query: 354 VFD 356
            FD
Sbjct: 356 AFD 358


>gi|90415376|ref|ZP_01223310.1| recombination protein F [marine gamma proteobacterium HTCC2207]
 gi|90332699|gb|EAS47869.1| recombination protein F [marine gamma proteobacterium HTCC2207]
          Length = 370

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 161/361 (44%), Gaps = 31/361 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I + RN  +++L    Q  I  G NG GKT++LE+I  L  GR FR      V    +
Sbjct: 6   LDIFQVRNLQAVQLSCHPQANIIFGANGSGKTSLLESIYLLGRGRSFRHRDLRVVVNSNA 65

Query: 70  PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
                +      + G +  + IK  ++     R   I+   ++   +L   L +  +   
Sbjct: 66  AELIVSARLNRDVSGSSHQLGIKRTSKGQFEAR---IDGQALQSAVQLVSELPLQLIDAH 122

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
              +  G  ++RR+FLD  VF ++  +      F++ ++ RN+LL  G       S+  A
Sbjct: 123 SFMLLEGGPLQRRQFLDWGVFHVEHTYTEVWRRFQKTLKQRNQLLRHGRMGEDMLSTWTA 182

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS---FC---- 241
           ++  L  +I   R   ++ LS              I+++L+ F DG  + S   +C    
Sbjct: 183 ELIPLCEQITEFRQAYLSQLSK------------QIQIALSAF-DGLGEISLEYYCGWDD 229

Query: 242 --ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             +L++ Y +     +  D  ++ T  G HR+D+ +   D      H S G+ K+++  +
Sbjct: 230 SRSLQDVYVQD----QARDIATKTTNHGAHRADIRIK-VDGQPAADHLSRGQIKLLVYAL 284

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA A       G + + LLD++ A LD   R  +   + D+G Q F+TG DK  F+ L 
Sbjct: 285 KLAQAGHYREKLGESCLFLLDDLPAELDYQHRGQVIAYLNDLGCQYFITGVDKQDFECLL 344

Query: 360 E 360
           E
Sbjct: 345 E 345


>gi|163757040|ref|ZP_02164146.1| putative DNA replication and repair protein [Kordia algicida OT-1]
 gi|161323044|gb|EDP94387.1| putative DNA replication and repair protein [Kordia algicida OT-1]
          Length = 376

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/361 (28%), Positives = 164/361 (45%), Gaps = 42/361 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N+ +    F+ +    VG+NGVGKTN+L+AI  LS G+ +     +   R
Sbjct: 20  LKKLSLINYKNFETNSFDFNQKINCLVGNNGVGKTNVLDAIYHLSFGKSYFNPVASQNIR 79

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121
            G       F  ++G+   AD       RD+  +  L+     +     +  D+L++H+ 
Sbjct: 80  HG-----EDFFVIDGLYEKAD-------RDENIICSLKKGQKKMVKRNGKPYDKLSEHIG 127

Query: 122 ISWLV---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--- 174
              LV   P+  D I  G S  RR+F+D ++   + ++   +I++ +++  RN LL    
Sbjct: 128 FLPLVIISPADRDLIIEG-SDTRRKFMDSVISQSNKKYLHNLINYNKVLSQRNSLLKYFA 186

Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHI-KLSLTGF 231
               FD    S    Q+ E G +I   R   ++A   + M  Y    N   I  +S    
Sbjct: 187 LNSTFDGDTLSIYNDQLHEFGSQIYAERSAFLDAFLPIFMTRYNAISNEKEIVNISYKSQ 246

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           L  K    F +L EE   K       D + + T +G H+ DL+       I    GS G+
Sbjct: 247 LHEK---DFRSLLEESLAK-------DKVLQYTSVGTHKDDLLFTIETYPIK-KFGSQGQ 295

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTG 349
           QK  L+ + LA    I       PILLLD+I   LDED+   +  +V   D G QIF++ 
Sbjct: 296 QKSFLIALKLAQFDFIKQLANVTPILLLDDIFDKLDEDRVAQIMALVNNEDFG-QIFISD 354

Query: 350 T 350
           T
Sbjct: 355 T 355


>gi|268318565|ref|YP_003292221.1| DNA replication and repair protein RecF [Lactobacillus johnsonii
           FI9785]
 gi|262396940|emb|CAX65954.1| DNA replication and repair protein RecF [Lactobacillus johnsonii
           FI9785]
          Length = 374

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 160/356 (44%), Gaps = 32/356 (8%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           + +FRN+  L++ FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++ R G   
Sbjct: 8   LKDFRNFEELKINFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKELIRFG--- 64

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             S FA ++G    + + ++L+ R   + +   +N +  + +      +      P    
Sbjct: 65  --SKFAGLQGKIHKSQLEVELKLRLTPNGKKAWVNRLEQKKLSAYVGQMNAILFSPEDLA 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187
           +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D  +   + 
Sbjct: 123 LVKGAPSTRRRFMDLEFGQINSEYLYFLSQYRQVLQQRNNYLKQLSIKKANDLVFLDVLS 182

Query: 188 AQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTGFLDGKFD 237
            Q+A +  +I   R++ I  L+S             E +Q    P +K  +T   D   +
Sbjct: 183 DQLAGIAAEIISRRIKYIKKLNSYAQSAHSEISGQAEKLQIFYRPSVK-EITP--DDDVE 239

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVV 295
             +  +   Y K     R  +     TL GPHR DL     DK    AH   S G+Q+ +
Sbjct: 240 TIYQKVITSYKK----NRPNEIRKGTTLSGPHRDDLDFLINDKN---AHDFASQGQQRTI 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + + LA  +L+   T   PILLLD++ + LD  ++++L   +    +Q F+T TD
Sbjct: 293 SLSVKLAEIQLVHELTQEYPILLLDDVMSELDHRRQSSLLNYIHG-KTQTFITTTD 347


>gi|256851677|ref|ZP_05557065.1| recombination protein F [Lactobacillus jensenii 27-2-CHN]
 gi|260661606|ref|ZP_05862518.1| recombination protein F [Lactobacillus jensenii 115-3-CHN]
 gi|282934239|ref|ZP_06339516.1| DNA replication and repair protein RecF [Lactobacillus jensenii
           208-1]
 gi|297205286|ref|ZP_06922682.1| recombination protein F [Lactobacillus jensenii JV-V16]
 gi|256615635|gb|EEU20824.1| recombination protein F [Lactobacillus jensenii 27-2-CHN]
 gi|260547663|gb|EEX23641.1| recombination protein F [Lactobacillus jensenii 115-3-CHN]
 gi|281301713|gb|EFA93980.1| DNA replication and repair protein RecF [Lactobacillus jensenii
           208-1]
 gi|297149864|gb|EFH30161.1| recombination protein F [Lactobacillus jensenii JV-V16]
          Length = 374

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 160/365 (43%), Gaps = 40/365 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  +RN+  L   F     IF+G N  GKTN+LEA+ FL+  R  R  S  ++ R
Sbjct: 3   LKQLKLQNWRNFEELETDFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV----VIRVVDELNKHLRI 122
            G  +     A + G    + +   L+ R +   +   IN +    + R V +LN  L  
Sbjct: 63  FGQKA-----AILSGHVVKSQVETDLQVRINTKGKKAWINRIEQSKLSRYVGQLNAIL-- 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYF 178
               P    +  G    RRRF+D     I+P +      + ++++ +N  L +       
Sbjct: 116 --FSPEDLALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSK 173

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV-----QKENF-----PHIKLSL 228
           D  +   +  Q+A L  +I   R++ +  LS    E       +KE       P + L+ 
Sbjct: 174 DKVFLEVLSDQLAGLAAEIISRRLKYLAYLSEYAKEAYAAISNEKERLEVVYNPSVTLT- 232

Query: 229 TGFLDGK--FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           +G    +  + +     K+  A ++  G         TL GPHR DL     DK     +
Sbjct: 233 SGQTSSESIYHEVLACFKKNEAGEIRTG--------TTLAGPHRDDLQF-LLDKKDAHLY 283

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S G+Q+ + + + LA  +LI   TG  P LLLD++ + LD  +++AL   +    +Q F
Sbjct: 284 ASQGQQRTIALSLKLAEIQLIHQITGEYPTLLLDDVMSELDHTRQSALLNYIHG-KTQTF 342

Query: 347 MTGTD 351
           +T TD
Sbjct: 343 ITTTD 347


>gi|163938017|ref|YP_001642901.1| recombination protein F [Bacillus weihenstephanensis KBAB4]
 gi|229136318|ref|ZP_04265065.1| DNA replication and repair protein recF [Bacillus cereus
           BDRD-ST196]
 gi|226737772|sp|A9VM93|RECF_BACWK RecName: Full=DNA replication and repair protein recF
 gi|163860214|gb|ABY41273.1| DNA replication and repair protein RecF [Bacillus
           weihenstephanensis KBAB4]
 gi|228647190|gb|EEL03278.1| DNA replication and repair protein recF [Bacillus cereus
           BDRD-ST196]
          Length = 375

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 169/381 (44%), Gaps = 26/381 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   +  ++G     + SI LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDYGNIKGRLQRRNSSISLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGAKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TL+GPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  SV  
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT--SVEG 349

Query: 357 SLNET---AKFMRISNHQALC 374
             +ET   AK + ++N    C
Sbjct: 350 IEHETLKEAKTIHVTNGTVDC 370


>gi|261854633|ref|YP_003261916.1| DNA replication and repair protein RecF [Halothiobacillus
           neapolitanus c2]
 gi|261835102|gb|ACX94869.1| DNA replication and repair protein RecF [Halothiobacillus
           neapolitanus c2]
          Length = 359

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 152/348 (43%), Gaps = 16/348 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-VTRIG 68
           L+I++FRN         A   + VGDNG GKT++LEAI +LS  + FR  ++ D + R  
Sbjct: 9   LSITQFRNLTMTDCPLSAGFNLLVGDNGAGKTSVLEAIYYLSTLKSFRTQTHNDLIARYP 68

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
                    R    +   D  + LE   D+    L++    +        HL +  L   
Sbjct: 69  DRDRGCAVVRAGVHQDDHDFFMALERCKDQFR--LRLGREEVPRASLFVAHLPVLALHAQ 126

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
            D +       RR+F+DRM F +          F R+++ RN  L  G     W    + 
Sbjct: 127 SDDLVLAGPEFRRKFIDRMAFYLFADFVPAYAQFARMLKQRNAALRTGQSTEIW----DP 182

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
              + G ++N  RV  ++ L + ++  V +   P + + +  F  G   +S   L E  A
Sbjct: 183 LFIQYGERLNEQRVAALDLLKT-VLPQVFEALAPQLSVDMQ-FHPGH--KSGLDLSEALA 238

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           +     R+ D    +TLIGP R+D++    D A   +  S G+ KV    + LA A +  
Sbjct: 239 RN----RERDREMGQTLIGPQRADILFTLNDYAFK-SFASRGQIKVFTAALTLATAHIWQ 293

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
              G   +LL D+  +  D    +AL   ++++G Q+F++  D+   D
Sbjct: 294 AQRGKRAVLLFDDFMSEFDAHHSSALLHYLSNMGHQVFISAVDRQQID 341


>gi|189345561|ref|YP_001942090.1| DNA replication and repair protein RecF [Chlorobium limicola DSM
           245]
 gi|259563358|sp|B3EDN1|RECF_CHLL2 RecName: Full=DNA replication and repair protein recF
 gi|189339708|gb|ACD89111.1| DNA replication and repair protein RecF [Chlorobium limicola DSM
           245]
          Length = 363

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 165/359 (45%), Gaps = 22/359 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ + + +FRN+ +L         +  G NG GKT++LE I + +  +GF  A  ++ 
Sbjct: 1   MKIEQIQLVQFRNHKNLSYGPAEGINLLYGPNGSGKTSVLEGIHYCALTKGFVTAYDSEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  SFF    R    + L +  +K+    D   + L +N   +    +    +    
Sbjct: 61  LAFGE-SFFLINGRFIS-DALKEDGVKVVYSRDNGKK-LTVNGQDLTSFSQHIGSIPCIT 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSS 181
             P+   + +G  +ERRRFLD  +   D R+ + M+++ R++  RN LL    E      
Sbjct: 118 FSPAEMSVINGSPVERRRFLDNAICQADCRYLQSMLNYRRVLLQRNALLLQLKERVQSIE 177

Query: 182 WCSSIEAQMAELGVKINIARV----EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
             + +  Q++E    I  AR+    E++  L +++     KE  P I      +      
Sbjct: 178 MLNVLTEQLSEYAADIVFARLRFLDEILPGLKAILSSVSVKEE-PRIT-----YRSSLVP 231

Query: 238 QSFCALKEE---YAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             +   KEE   Y ++ +  +K D ++R  T  GPHR D IV + ++     + S G+Q+
Sbjct: 232 SVYALTKEELINYFREQYAKKKQDEIARGLTAGGPHRDD-IVFFLNQHEIKKYASQGQQR 290

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
             L+ + +A     S+     P+ L D++ + LD  +   LF ++   G Q+F+T T+K
Sbjct: 291 SFLIAMKMALYGYFSDKLNEKPVCLFDDLFSELDRSRVEVLFALLASFG-QVFITATEK 348


>gi|88860614|ref|ZP_01135251.1| gap repair protein with nucleoside triP hydrolase domain
           [Pseudoalteromonas tunicata D2]
 gi|88817209|gb|EAR27027.1| gap repair protein with nucleoside triP hydrolase domain
           [Pseudoalteromonas tunicata D2]
          Length = 364

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 161/361 (44%), Gaps = 15/361 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRN A L         I  G+NG GKT++LEAI +LS G+ FR   Y  +
Sbjct: 1   MSLELVTVKNFRNLADLSFSPVDGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTIKYKTI 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +F      R++ +  L  + I      D     L+I   V R + EL + + + 
Sbjct: 61  IQHHQDTFVIHAKKRIDQL--LLPVGISKNQAGDTE---LKIQGKVSRKIAELAELIPVQ 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182
            + P    +F G   ERR+FLD  +F ++       + F +L++ RN LL +   +    
Sbjct: 116 LITPESYALFFGGPKERRKFLDFGLFHVEHHFFSLWLSFNKLLKQRNALLKQKPHNYHEQ 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + +   L ++IN  R   +    S+  + +         L+L   L+ K++  +  
Sbjct: 176 IKYWDKEFVRLSLEINTLRKTYLERFRSVFFDKIAA------NLTLIVNLEIKYNSGWKD 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            + E ++ L      D     T  GPH++DL     D  +   + S G+ K+++  + + 
Sbjct: 230 -EAELSELLIQSFTRDVKQGFTSFGPHKADLTFSVNDSLVE-NYFSRGQLKLLIYALKVT 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I   T    ILL+D++S+ L  D R  + +++    SQIF+T  +     ++ E  
Sbjct: 288 QNYIIEAETQKQSILLIDDLSSELSIDTRKDVGQLLAQCNSQIFITAIESESISAVLEPM 347

Query: 363 K 363
           K
Sbjct: 348 K 348


>gi|228924237|ref|ZP_04087508.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835455|gb|EEM80825.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 375

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 170/380 (44%), Gaps = 24/380 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ + G +I   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIDHGARILQKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSV 354
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  D   
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIE 351

Query: 355 FDSLNETAKFMRISNHQALC 374
            ++L E AK + ++N    C
Sbjct: 352 HETLKE-AKTIHVTNGTVDC 370


>gi|88813026|ref|ZP_01128268.1| recombination protein F [Nitrococcus mobilis Nb-231]
 gi|88789659|gb|EAR20784.1| recombination protein F [Nitrococcus mobilis Nb-231]
          Length = 357

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 157/353 (44%), Gaps = 34/353 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           + +  FRN   + L  D +     G+N  GKT++LEAI +L+ GR F       + R G 
Sbjct: 6   IEVEAFRNLRGVVLTPDPRVNFIWGNNASGKTSLLEAIHWLARGRSFLSVHSDQLIRQGC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            + F+  A ++       + ++  T     VRC   N   I  + E      I+WL+P+ 
Sbjct: 66  RA-FTLGASIQVPPRTTWLGME-RTPGRTRVRC---NGQDIWNLSE------IAWLLPTH 114

Query: 130 ------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
                  R+F G   ERR  LD  VF ++  ++ R   ++R +R RN  L  G  DS   
Sbjct: 115 VINTESQRLFVGAPQERRSLLDWGVFHVEHSYQGRWRRYQRALRQRNAALRTG--DSQLA 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSFCA 242
            + EA +      ++ +R   +NAL      +++ E  P ++L         +D QS   
Sbjct: 173 RAWEADLVTAAEAVDSSRRCYLNALWPHWHAFIE-EWLPELEL--------HWDFQSGWP 223

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIF 300
            +++    L   R  +     TL GPHR DL  I      A  +   S G+QK+  + + 
Sbjct: 224 RRDDLRGVLAQARGRELERGHTLYGPHRGDLRFIAGDVGAAQRL---SRGQQKLAAIALR 280

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           LA A L        P++L+D+++A LD   R  +   +  + +Q+ +T   ++
Sbjct: 281 LAQAELTLKNGQQRPVILVDDLAAELDAGHRERVLAKLLRMDAQLLLTALSQN 333


>gi|225012738|ref|ZP_03703173.1| DNA replication and repair protein RecF [Flavobacteria bacterium
           MS024-2A]
 gi|225003271|gb|EEG41246.1| DNA replication and repair protein RecF [Flavobacteria bacterium
           MS024-2A]
          Length = 359

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 167/352 (47%), Gaps = 24/352 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + ++ ++N  S    F+ +   F+G+NGVGKTNIL+AI  L+ G+ +         +
Sbjct: 3   LKQITLTNYKNITSKTFDFNPKINCFIGNNGVGKTNILDAIYHLAFGKSYFNPISIQNIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWL 125
           IG+  FF+   R E  E    I   ++    +++ R  +I D   R+ D +   L  + +
Sbjct: 63  IGT-DFFALEGRYETNEREEKIICSVKKGQKKTLKRNGKIYD---RIADHIG--LIPTVI 116

Query: 126 VPSMDR-IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +   DR + S  S  RR+F+D ++   D    R +I++ +++  RN LL   YF  +   
Sbjct: 117 ISPADRDLISEGSSTRRKFIDAVIGQTDAEFLRNLIEYNKILSQRNALLK--YF--ALNH 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--FDQSFCA 242
           + +A   E+  +    R + I+    L ME    +  P  K       D K   D S+ +
Sbjct: 173 TFDADTLEIYNEQLTTRGQPIHEKRKLFME----QFIPIFKERYHSISDKKETVDLSYDS 228

Query: 243 LKEEYAKKLF--DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                + K+   +    D M + T  G H+ D+ +   ++ I    GS G+QK  LV + 
Sbjct: 229 QLHTISHKILLEESLSKDRMIQHTTTGIHKDDIHLLKDEQPIK-KFGSQGQQKTFLVALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGT 350
           LA    +   TG APILLLD+    LD+ + + +  +V   D G QIF+T T
Sbjct: 288 LAQFDFLKAETGVAPILLLDDAFDKLDQQRVSQIISLVDQNDFG-QIFITDT 338


>gi|315125114|ref|YP_004067117.1| gap repair protein [Pseudoalteromonas sp. SM9913]
 gi|315013627|gb|ADT66965.1| gap repair protein [Pseudoalteromonas sp. SM9913]
          Length = 364

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 153/342 (44%), Gaps = 25/342 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  FRN  +L L       I  G+NG GKT++LEAI +LS G+ FR + +  +     
Sbjct: 6   LSLKYFRNIEALTLEPVNGVNIIYGENGCGKTSLLEAIYYLSHGKSFRTSKHKSIIAHQQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWLVPS 128
             F      + G + L D+SI +     ++    L+I     R V EL + + +  + P 
Sbjct: 66  DQFV-----IHGRKALYDLSIPIGISKTQAGETNLKIQGKASRKVSELAQLMPVQIITPE 120

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDS--SWC 183
              +F G   ERR+FLD  +F ++         F ++++ RN LL    + YFD    W 
Sbjct: 121 SYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKSKPKNYFDQIKFW- 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-A 242
              + +   L  +IN  R+  I        + +  E      L ++     K  +S C A
Sbjct: 180 ---DKEFVRLAEQINKLRIAYITRFKQQFFDKMCAELTLIRDLEISFNAGWKESESLCDA 236

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L++ + +        DS    T  GPH++D        ++     S G+ K++L  + + 
Sbjct: 237 LEQSFER--------DSRQGFTSKGPHKADFSFSVAGSSVENVF-SRGQLKLLLYALKVT 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
              LI + T    ILL+D++ + L ED +  + +++T   SQ
Sbjct: 288 QNSLIESETDKQSILLIDDLPSELSEDTKEKVGQLLTHCSSQ 329


>gi|146280400|ref|YP_001170553.1| recombination protein F [Pseudomonas stutzeri A1501]
 gi|166220726|sp|A4VFG0|RECF_PSEU5 RecName: Full=DNA replication and repair protein recF
 gi|145568605|gb|ABP77711.1| DNA replication and repair protein RecF [Pseudomonas stutzeri
           A1501]
          Length = 370

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 160/356 (44%), Gaps = 22/356 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+++  RN   + L    +  I  GDNG GKT++LEAI  L   R FR      V
Sbjct: 1   MSLSRLSVTGVRNLHPVTLSPSPRINILFGDNGSGKTSLLEAIHLLGLARSFRSIRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADI-SIKLETRDDRS--VRCLQINDVVIRVVDELNKHLR 121
                P+  + F +VE    L D  S  L    DRS  VR ++I+   +R   EL   L 
Sbjct: 61  ITYEQPAC-TVFGQVE----LPDQHSRALGVSRDRSGEVR-IRIDGQSVRSAAELADTLP 114

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           +  + P   R+  G    RR+FLD  VF ++ R        ++ +R RN  L  G  DS+
Sbjct: 115 LQLINPDSFRLLEGAPKLRRQFLDWGVFHVEHRFMSAWQRLQQALRQRNSWLRHGTLDSA 174

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
             ++   +++    +I+  R   I AL   + E   K       L+L+ +     D+   
Sbjct: 175 SDAAWSRELSLASDEIDGYRRAYIQALKP-VFETTLKALLDLDGLTLSYYRGWDKDR--- 230

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGI 299
            L +  A  L   R M      T  GP R+DL   V   + A  +   S G+QK+V+  +
Sbjct: 231 PLVDVLASSLERDRAMG----HTQSGPQRADLRLKVGSHNAAEVL---SRGQQKLVVCAL 283

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            +A   L+S       I L+D++ + LD   R AL R++  +  Q+F+T  D +V 
Sbjct: 284 RIAQGHLVSEAKRGQCIYLVDDLPSELDAQHRLALCRLLEQLNCQVFITCVDSTVL 339


>gi|255659818|ref|ZP_05405227.1| DNA replication and repair protein RecF [Mitsuokella multacida DSM
           20544]
 gi|260847893|gb|EEX67900.1| DNA replication and repair protein RecF [Mitsuokella multacida DSM
           20544]
          Length = 365

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 157/358 (43%), Gaps = 18/358 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  +RNY+ L L       IF+G N  GKTN++EA+ + S G   R     ++ R
Sbjct: 3   VRSLKLRNYRNYSELELALQPGINIFLGPNAQGKTNVVEAVYYASLGHSHRTHLDTELIR 62

Query: 67  --IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123
              G       F R   M         LE +  R+ R  + +N   IR+  EL   +   
Sbjct: 63  WDAGEGCIILDFDRRGVMN-------HLEFQFSRAKRRRILLNGHPIRL-KELIGSINTV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDS 180
              P    +  G    RRRFLD  +    P +   +++F R++  RN LL    E   D 
Sbjct: 115 LFSPEDLFLIKGAPAGRRRFLDGEISQASPAYYHELVEFNRIISQRNSLLKRIRERRADK 174

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           S  +  + Q+     KI   R+E +  L+ L     ++ +     L+++  + G  D + 
Sbjct: 175 SMLALWDEQLIASAEKIIRKRIEAVRKLNMLANLMQRRISSDQENLTVSYEVHGGEDMT- 233

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGI 299
                 Y + L   ++ D +   T  GPH  DL++      I +   GS G+Q+  ++ +
Sbjct: 234 KGFASWYNEMLRKSQETDILRGSTSYGPHHDDLVLTV--NGINLRTFGSQGQQRTGVLSL 291

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            LA    + + TG  PILLLD++ + LD  +R  L + +     Q  +T TD + F +
Sbjct: 292 KLAELEFLRSETGEYPILLLDDVMSELDVKRRQQLLQFIRRERIQTLITATDAAYFPA 349


>gi|212697385|ref|ZP_03305513.1| hypothetical protein ANHYDRO_01955 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675577|gb|EEB35184.1| hypothetical protein ANHYDRO_01955 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 357

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 167/368 (45%), Gaps = 37/368 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +S+FRNY S  + F+    IF+GDN  GKTN+LE+I +L+  + F+     D+  
Sbjct: 3   IQSLRLSKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDLIM 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                  +    +   E   ++ I++    + + + + +ND+      +L    ++    
Sbjct: 63  FNEKE-MALDGLIRKNESFKNVKIRV----NENKKEIFVNDIKYDKNKDLKSLFKLVLFT 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183
           P    I       RR  +D ++ +++  ++    DF++++  RN++L      YF     
Sbjct: 118 PEDLTIIKDGPNFRRNLIDDIIISVNFSYKALKKDFDKVLSQRNKVLKNQRSKYFKEELM 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            + + Q+  L  KI   R + I    SLI  Y +K +        +   + K D S    
Sbjct: 178 -AFDQQIIRLNYKIYRYREKYI----SLINNYAKKNH--------SNLTENKEDLSIIYR 224

Query: 244 K-------EEYAKKLFDGRKMDSMSRRTLIGPHRS--DLIVDYCDKAITIAHGSTGEQKV 294
                   EEY +K    +  D    RT  G  R   D+I++  D   +   GS G+Q+ 
Sbjct: 225 PDIVAKDIEEYREKFSKNKSYDLKYYRTTAGIQRDEIDIIINGKD---SKKFGSQGQQRS 281

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-QIFMTGTDKS 353
            ++ I LA+  LI NT+    I+L D++ + LDE + N L   + ++G  Q  +T T+  
Sbjct: 282 AILNIKLANVNLIENTSQDKAIILFDDVFSELDEKRSNFL---LENLGRFQTIITATNTK 338

Query: 354 VFDSLNET 361
             D ++++
Sbjct: 339 SLDRVDKS 346


>gi|254393576|ref|ZP_05008709.1| RecF [Streptomyces clavuligerus ATCC 27064]
 gi|294813743|ref|ZP_06772386.1| DNA replication and repair protein recF [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442164|ref|ZP_08216898.1| recombination protein F [Streptomyces clavuligerus ATCC 27064]
 gi|197707196|gb|EDY53008.1| RecF [Streptomyces clavuligerus ATCC 27064]
 gi|294326342|gb|EFG07985.1| DNA replication and repair protein recF [Streptomyces clavuligerus
           ATCC 27064]
          Length = 381

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 161/364 (44%), Gaps = 29/364 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +      + FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLGPGVSSFVGANGQGKTNLVEAVGYLATLASHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R G+       A  +G     D S  I+LE    R+ R        +R  D L   +R 
Sbjct: 61  VRAGAQRAVIRAAVTQG-----DRSQLIELELNPGRANRARINRSSQVRPRDALGI-VRT 114

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---- 178
               P    +  G   +RRRFLD ++ A  PR      D+ER+++ RN LL         
Sbjct: 115 VLFAPEDLALVKGDPGDRRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRH 174

Query: 179 -------DSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFP-HIKLS 227
                  D S     +  +A +G ++   R++++  L  L     E +     P  ++  
Sbjct: 175 GGSRSGADLSTLDVWDQHLARVGAELLARRLDLVATLRPLADKAYESLAPGGGPLELEYR 234

Query: 228 LTGFLDGKFDQSFCALKEEYA---KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
            +       +      +E Y    + L + RK +     TL+GPHR +L++   +     
Sbjct: 235 SSAGATAPPEDGAEGREELYGLLLEALGEARKQEIERGVTLVGPHRDELLLKLGELPAK- 293

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
            + S GE     + + LA   L+  + G  P+L+LD++ A LD  +R  L  +V   G Q
Sbjct: 294 GYASHGESWSYALALRLASYELL-RSEGHEPVLVLDDVFAELDAKRRERLAELVAP-GEQ 351

Query: 345 IFMT 348
           + +T
Sbjct: 352 VLVT 355


>gi|160914816|ref|ZP_02077030.1| hypothetical protein EUBDOL_00823 [Eubacterium dolichum DSM 3991]
 gi|158433356|gb|EDP11645.1| hypothetical protein EUBDOL_00823 [Eubacterium dolichum DSM 3991]
          Length = 366

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 158/350 (45%), Gaps = 7/350 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + ++RNY  L++       I  G N  GKTN+LEAI +LS  R  R A   D+ + G 
Sbjct: 6   LRLHDYRNYEDLQITLKNGIHILSGKNAQGKTNVLEAILYLSTTRSHRTACDEDLIKEGK 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +FF   A +E      ++ I +   ++R        + V +V D + +        P  
Sbjct: 66  EAFFIK-AEIEKTNRKEELQISV---NERGKNLFMYKNPVSKVSDFIGE-FNAVMFCPDD 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             +F+     RRRF+D  +  +   +   +   ++L++ RNR L + + +  +   +  Q
Sbjct: 121 MMLFNASPRVRRRFVDMELSKLSKTYVNTLFVAQKLLKERNRYLKQEHVNKEYLDVVTMQ 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           + E  + +   R   +  L +   ++ ++ +    ++ +       + +    L++   +
Sbjct: 181 LIEATMVVMKQRHHFLKQLLTKCAQFYKRLSNDGTQIEVIYESCVPYTEDEQLLRDRLTE 240

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           K    R+ D   R T +G H+ D I     + +   + S G+++ +L+ + +    +I +
Sbjct: 241 KYEKSRERDLAMRVTSVGIHKEDFIFQINGREVA-TYASQGQKRSILLALKVGMIYMIED 299

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
                P+LLLD++ + LD D+R  L   + +   QIF++ TD   F  L+
Sbjct: 300 IIHDYPVLLLDDVFSELDMDRRKELLHSLPN-EVQIFISTTDIEEFKHLD 348


>gi|108802860|ref|YP_642797.1| DNA replication and repair protein RecF [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764103|gb|ABG02985.1| DNA replication and repair protein RecF [Rubrobacter xylanophilus
           DSM 9941]
          Length = 374

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 149/338 (44%), Gaps = 28/338 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  FRNYA    +      + VG+N  GKTN+LEA++F+  G   R  + ++V R
Sbjct: 5   IRAIRLVNFRNYAGATALLSPGLNVLVGENAQGKTNLLEALAFVVSGSSPRTPNDSEVVR 64

Query: 67  IGSPSFFSTFARV--EGME-----GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            G   F    ARV   G E     G A  S K  T D   V  L      +  V      
Sbjct: 65  WGE-GFVRVEARVVDGGHERRLAVGYAPGSRKRLTVDGAPVESLARYAAGVAGV------ 117

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEG 176
            R     P   R+  G   +RR FLD ++ ++ P + R   ++ R ++ RN+LL    +G
Sbjct: 118 -RAVTFFPDDLRVVKGSPSDRRSFLDALLSSLRPAYARAAAEYARAVQQRNQLLRRIRDG 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                  ++ + ++ ELG+ +   R      L          E+F     +L G      
Sbjct: 177 LSSERTLATWDRKVVELGLVLLEGRAAAAAPL---------DEHFRASMRALYGPQKAAV 227

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
             S+ A  E YA+ L +    D     T +GPHR DL +   +      +GS G+Q++  
Sbjct: 228 GYSYSATPERYAQALREAHSADIERGITSVGPHRDDLRI-LLEGVDLTTYGSQGQQRLAT 286

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           + +  A    I + TG  P+LL D++ + LDE +R+ L
Sbjct: 287 LALKFAARDYIRDATGQDPVLLFDDVMSELDERRRDYL 324


>gi|206901870|ref|YP_002251259.1| DNA replication and repair protein RecF [Dictyoglomus thermophilum
           H-6-12]
 gi|206740973|gb|ACI20031.1| DNA replication and repair protein RecF [Dictyoglomus thermophilum
           H-6-12]
          Length = 359

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 164/363 (45%), Gaps = 44/363 (12%)

Query: 10  LNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
           L +  FRN  +L L  FD    IF G+N  GKTNILE+I FL  G+ FR  +  ++ R G
Sbjct: 6   LRVVNFRNLKNLNLNFFDV--NIFYGENAQGKTNILESIYFLFSGKSFRTKNEREIIRWG 63

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP- 127
             SF+     + G     + ++ LE+      + ++IN         L ++  + +L P 
Sbjct: 64  EESFY-----LRGDVNWQNQNLVLESALSELEKKIKINQ------KNLKRYRDMVFLFPI 112

Query: 128 ---SMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
              S + I  F     +RR  L+R +  +  ++ + + ++ + +  RN  L  G   S W
Sbjct: 113 ILFSQEEIENFKKGPSQRRYLLNRFISTLSYKYHKALSEYYKTLYQRNLTLKSGRDVSVW 172

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFDQS 239
            S+    + +LG  I   R+ ++  + S + E   K   +NF  I+   T  L       
Sbjct: 173 NST----LIKLGSYILFQRLSIVEEIKSKVKEVSNKLLEKNFLEIEYISTVPLGDS---- 224

Query: 240 FCALKEEYAKK----LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI---AHGSTGEQ 292
               +EE AK     L      +     TL+GPHR D+++      I      +GS GE+
Sbjct: 225 ----EEEIAKNFEVMLKAKEAEEKKKGYTLVGPHRDDIVLRIIRDDIQYDLRKYGSAGEK 280

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           K+  +   LA   ++S      PILL+D++   LDE K+  ++  + D   QIF+T   K
Sbjct: 281 KLGYIIWKLAQVEILSEKRKEKPILLIDDLFGDLDEYKQKRVWDGIKDF--QIFLTTPIK 338

Query: 353 SVF 355
             F
Sbjct: 339 IEF 341


>gi|160872204|ref|ZP_02062336.1| DNA replication and repair protein RecF [Rickettsiella grylli]
 gi|159121003|gb|EDP46341.1| DNA replication and repair protein RecF [Rickettsiella grylli]
          Length = 363

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 165/367 (44%), Gaps = 32/367 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-----RASYADV 64
           L  + FRN A L L F        G NG GK+++LEAI FLS GR FR     RA   D 
Sbjct: 6   LKTNYFRNLAELDLEFSPHFNFIYGKNGSGKSSLLEAIYFLSLGRSFRSRLASRAIQYDA 65

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      F+ F+ + G       +I LE       +    N+     V EL K L + +
Sbjct: 66  ER------FNLFSVLLGTSSTTMKTIGLEKIRQGKTKIKIDNNT--NPVSELAKLLPLQF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
           + P+   + SG    RR F+D  VF ++P+  +    ++ +++ RN  L        W  
Sbjct: 118 INPNSYLLLSGGPRARRGFIDWGVFHVEPQFFQIWQRYQHILKQRNAALQR---QVPWNQ 174

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFC 241
               +  + E   +I   R   ++ L  LI+E + K  N   + L      D K +    
Sbjct: 175 IKIWDLALIEAADEITSFRENYLHQLVPLIIELINKLVNLQGLNLVFYQGWDKKLN---- 230

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIF 300
                 A  L    + D     T  GPHR+DL++      I++    S GEQK+++  + 
Sbjct: 231 -----LASILSGSLERDYKLLYTQFGPHRADLLLSL--NGISVHEILSRGEQKLLICALQ 283

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L+      + I L D++ + LD  K+NAL +++  + +Q+F+T  +K++  S+ E
Sbjct: 284 LAQGLLLKKIAQKSCIYLFDDLFSELDPTKQNALMQLLNTLEAQVFITTIEKTLIKSV-E 342

Query: 361 TAKFMRI 367
           T +  +I
Sbjct: 343 THRLGKI 349


>gi|257452988|ref|ZP_05618287.1| RECF protein [Fusobacterium sp. 3_1_5R]
 gi|317059528|ref|ZP_07924013.1| RECF protein [Fusobacterium sp. 3_1_5R]
 gi|313685204|gb|EFS22039.1| RECF protein [Fusobacterium sp. 3_1_5R]
          Length = 364

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 167/354 (47%), Gaps = 17/354 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + ++  RN  +  ++  +   +F G NG GKT+ILEAI F + G  FR    +++
Sbjct: 1   MKVLSIQLNHVRNLKNQEIIISSPIQVFYGKNGQGKTSILEAIYFAATGLSFRTKHSSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR----SVRCLQINDVVIRVVDELNKHL 120
            R    +   +    +       +S+ +E    +      +  Q+         E   +L
Sbjct: 61  IRYTKNTLSCSLGYQDQFSK-KSLSVSIENEKKQFFFLGKKISQM---------EFYGNL 110

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            + + +P    + +G    RR F+DR +  I+  + +++  F  L++ RN+ L E  + +
Sbjct: 111 NVIYYIPEDVMLINGSPSVRRLFMDREISQINVFYLQQLKKFSHLLKIRNKYLKEKLYQN 170

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQ 238
                 E +  E G  +   R   +  +SS I    Q   +    ++L    F++ + D 
Sbjct: 171 EEFLIYEKEFVECGSYLIEQRNHYLQLMSSFIKNIYQNLFDKEKELQLQYKTFIEFQNDV 230

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   ++EE+ K++   ++ +     +++GPH+ + I    ++     + S GE+K ++  
Sbjct: 231 TLSKIQEEFWKEIKKKKEKEIQYGFSMVGPHKDEFIF-LLERQDAKLYASQGEKKSIIFS 289

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + L+   ++S      PI+L+D+++++ DE++  ++ + + +   Q+F+T T++
Sbjct: 290 LKLSEIDILSKNKKEMPIVLIDDVTSYFDEERCYSVLQYLYEKKVQVFITSTER 343


>gi|290473097|ref|YP_003465958.1| gap repair protein [Xenorhabdus bovienii SS-2004]
 gi|289172391|emb|CBJ79158.1| gap repair protein with nucleoside triP hydrolase domain, part of
           RecFOR complex that targets RecA to ssDNA-dsDNA junction
           [Xenorhabdus bovienii SS-2004]
          Length = 363

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 159/366 (43%), Gaps = 23/366 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN A   L         VG NG GKT+ILEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIADADLTLATGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSIQAGRVIRHDC 65

Query: 70  PSFFSTFARVEGM--EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
             F     R+E    E +  + +      D  VR   I+      + EL K L +  + P
Sbjct: 66  EEFI-LHGRLEQQFHERILAVGLSKNRLGDSKVR---IDGSDGHKIAELAKMLPMQLITP 121

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCS 184
               + +G    RR F+D   F  +PR     ++ +RL++ RN   R +T       W  
Sbjct: 122 EGFTLLNGGPKYRRAFIDWGCFHNEPRFFTAWVNLKRLLKQRNAALRQVTRYGQIQHW-- 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I+  R E I  ++  I E   K+  P   LS++      F Q +   +
Sbjct: 180 --DRELAPLATEISQWRAEYIAGIAEDI-EKTCKQFLPEFTLSIS------FQQGWDK-E 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D        S G+ K+++  + LA  
Sbjct: 230 SEYAELLARQFERDRTLTYTASGPHKADLRI-RVDGTPVEDMLSRGQLKLLMCALRLAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
              +  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  T   V D ++  ++
Sbjct: 289 EYFTRQSGQKCLYLLDDFASELDAGRRQLLAERLKSTQAQVFVSAITPGQVTDMIDVNSR 348

Query: 364 FMRISN 369
             R+ +
Sbjct: 349 MFRVEH 354


>gi|228911332|ref|ZP_04075136.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL
           200]
 gi|228848350|gb|EEM93200.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL
           200]
          Length = 375

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 169/381 (44%), Gaps = 26/381 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ISKIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   F +++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ + G KI   R E +     L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIDHGAKILQKRFEFL----QLLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  SV  
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT--SVDG 349

Query: 357 SLNET---AKFMRISNHQALC 374
             +ET   AK + ++N    C
Sbjct: 350 IEHETLKDAKTIHVTNGTVDC 370


>gi|154250041|ref|YP_001410866.1| DNA replication and repair protein RecF [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153977|gb|ABS61209.1| DNA replication and repair protein RecF [Fervidobacterium nodosum
           Rt17-B1]
          Length = 339

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 149/357 (41%), Gaps = 48/357 (13%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ I+ L +  FR ++   + F     +  G NG GKT+ILEAI++LS  R FR      
Sbjct: 5   RMLIESLRLRNFRCFSEYEVNFKDGINVIYGPNGAGKTSILEAIAYLSNPRSFRGGRDYH 64

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISI----------KLETRDDRSV-RCLQINDVVIRV 112
           + + G+ +FF    ++       DI++          K+   D   V R   I +V I +
Sbjct: 65  LIKFGT-NFFEVSGKIVSGGKKHDITVIYKSDETKKEKIAYLDGNKVKRFRDIQEVFIAI 123

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
                 +L I            G   +RR F D +   +D  +   + ++E+L+  RN L
Sbjct: 124 PFSFKDYLMI-----------DGYPSQRREFFDEIFSLLDLEYYEILRNYEKLLDERNAL 172

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           L E   D      +  +M  L  KI   R  MIN LS                     +L
Sbjct: 173 LAEENVDREKVLKLANEMQPLAEKIVEKREIMINELSK--------------------YL 212

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           D  F   + +  E   K + D    D   R T +GPH  D  V Y +  I     S G++
Sbjct: 213 DPMFKVEYVS--EFKGKNIADYIDEDIEKRVTTVGPHTHDDYVFYYNGYIAKYFASEGQK 270

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           +++ + + +A  +LI  T  + P+ L D+    LD    + L + ++++  Q+ + G
Sbjct: 271 RLLYLSLIIAFKKLIEETKLYEPVFLFDDPGNVLDP---HLLEKFISNLSGQVIIAG 324


>gi|330806660|ref|YP_004351122.1| DNA replication and repair protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327374768|gb|AEA66118.1| DNA replication and repair protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 357

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 147/327 (44%), Gaps = 16/327 (4%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEG-LADIS 89
           I  G NG GKT++LEA+  L   R FR      V +    +  + F +VE  EG  + + 
Sbjct: 17  ILYGANGSGKTSVLEAVHLLGLARSFRSTRLLPVIQYDQLAC-TVFGQVELAEGGHSALG 75

Query: 90  IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149
           I   +RD +    ++I+    R   +L + L +  + P   R+  G    RR+FLD  VF
Sbjct: 76  I---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPDSFRLLEGAPKIRRQFLDWGVF 132

Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209
            ++PR        ++ +R RN  L  G  D+   +  + ++ +   +I+  R   I AL 
Sbjct: 133 HVEPRFMTTWQRLQKALRQRNSWLRHGTLDAVSQAVWDRELCQASAEIDEYRRAYIKALK 192

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
             + E    E      L+L+ +     D+       E +  L    + D     T  GP 
Sbjct: 193 P-VFEQTLSELVELEGLTLSYYRGWDKDR-------ELSTVLAGSLQRDQQMGHTQAGPQ 244

Query: 270 RSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           R+DL +      A  I   S G+QK+V+  + +A   L+S       I L+D++ + LDE
Sbjct: 245 RADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLVSQARRGQCIYLVDDLPSELDE 302

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVF 355
             R AL R++ D+  Q+F+T  D  + 
Sbjct: 303 AHRRALCRLLEDLRCQVFITCVDHELL 329


>gi|42518088|ref|NP_964018.1| recombination protein F [Lactobacillus johnsonii NCC 533]
 gi|51316301|sp|Q74M31|RECF_LACJO RecName: Full=DNA replication and repair protein recF
 gi|41582372|gb|AAS07984.1| DNA replication and repair protein RecF [Lactobacillus johnsonii
           NCC 533]
 gi|329666395|gb|AEB92343.1| recombination protein F [Lactobacillus johnsonii DPC 6026]
          Length = 374

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 160/356 (44%), Gaps = 32/356 (8%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           + +FRN+  L++ FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++ R G   
Sbjct: 8   LKDFRNFEELKINFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKELIRFG--- 64

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             S FA ++G    + + ++L+ R   + +   +N +  + +      +      P    
Sbjct: 65  --SKFAGLQGKVHKSQLEVELKLRLTPNGKKAWVNRLEQKKLSAYVGQMNAILFSPEDLA 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187
           +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D  +   + 
Sbjct: 123 LVKGAPSIRRRFMDLEFGQINSEYLYFLSQYRQVLQQRNNYLKQLSIKKANDLVFLDVLS 182

Query: 188 AQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPHIKLSLTGFLDGKFD 237
            Q+A +  +I   R++ I  L+S             E +Q    P +K  +T   D   +
Sbjct: 183 DQLAGIAAEIISRRIKYIKKLNSYAQSAHSEISGQAEKLQIFYRPSVK-EITP--DDDVE 239

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVV 295
             +  +   Y K     R  +     TL GPHR DL     DK    AH   S G+Q+ +
Sbjct: 240 TIYQKVITSYKK----NRPNEIRKGTTLSGPHRDDLDFLINDKN---AHDFASQGQQRTI 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + + LA  +L+   T   PILLLD++ + LD  ++++L   +    +Q F+T TD
Sbjct: 293 SLSVKLAEIQLVHELTQEYPILLLDDVMSELDHRRQSSLLNYIHG-KTQTFITTTD 347


>gi|241895510|ref|ZP_04782806.1| recombination protein F [Weissella paramesenteroides ATCC 33313]
 gi|241871256|gb|EER75007.1| recombination protein F [Weissella paramesenteroides ATCC 33313]
          Length = 383

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 158/349 (45%), Gaps = 21/349 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L ++ FRNY SL + F +   +F+G N  GKTN+LEAI  L+  R  R ++  ++     
Sbjct: 6   LKLNNFRNYESLDVSFSSGVNVFLGPNAQGKTNLLEAIYVLALTRSHRTSTDKELI---- 61

Query: 70  PSFFSTFARVEGM--EGLADISIKLE-TRDDRSVRCLQINDV-VIRVVDELNKHLRISWL 125
            S+ +  A+V G      +D+ + L+ T   +  R   +N   +   + +LN    +   
Sbjct: 62  -SWQAKEAQVAGTVARQYSDVPLSLKFTNKGKKARINHLNQAKLANYIGQLN----VILF 116

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSS 181
            P    +  G    RR F+DR    +  ++      ++ +++ RNR L    ++   D  
Sbjct: 117 APEDLDLVKGAPSVRRNFIDREFSQMSAKYLYTANQYKEVLKQRNRYLKQLQSKQASDKL 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQS 239
           +   +  Q+     ++   RV +I  L +          +N   + +     L+ +   +
Sbjct: 177 YLDVLTEQLVNFASELITRRVTLIKKLDAAAQPIQAAITQNNEQLHIQYVSQLNNESLAN 236

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             ++K+    +    R+ + +   TL+GPHR DL  D  +  +    GS G+Q+   + +
Sbjct: 237 IESVKQAMLSRFKQLREREIIMGTTLLGPHRDDLRFDVNEHDVA-NFGSQGQQRTTALAV 295

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            LA   L+   TG  P+LLLD++ + LD D++  L   + D   Q F+T
Sbjct: 296 KLAEIDLMKEETGEYPVLLLDDVLSELDSDRQTHLLAAMQD-KVQTFIT 343


>gi|330890247|gb|EGH22908.1| recombination protein F [Pseudomonas syringae pv. mori str. 301020]
          Length = 368

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 157/328 (47%), Gaps = 22/328 (6%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVE-GMEGLADI 88
            I  G NG GKT++LEAI  L   R FR +    V +   PS  + F +V+    G +++
Sbjct: 27  NILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQPSC-TVFGQVDLAQGGHSNL 85

Query: 89  SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
            +   +RD +    ++I+    R   +L + L +  + P   R+  G    RR+FLD  V
Sbjct: 86  GV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPDSFRLLEGAPKIRRQFLDWGV 142

Query: 149 FAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
           F ++PR    M+ ++RL   ++ RN  L  G  D++  ++ + ++     +I+  R   I
Sbjct: 143 FHVEPRF---MVTWQRLQKALKQRNSWLRHGTLDAASQAAWDRELCSASDEIDEFRRAYI 199

Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
            AL   + E    E      L+L+ +    +D+     ++E +  L      D     T 
Sbjct: 200 KALKP-VFEQTLGELVELEGLTLSYYRG--WDK-----EKELSTVLASSLHRDQQMGHTQ 251

Query: 266 IGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
            GP R+DL +      A  I   S G+QK+V+  + +A   L+S       I L+D++ +
Sbjct: 252 AGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLVSQVRRGQCIYLVDDLPS 309

Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 310 ELDDNHRRALCRLLEELRCQVFITCVDQ 337


>gi|311070651|ref|YP_003975574.1| recombination protein F [Bacillus atrophaeus 1942]
 gi|310871168|gb|ADP34643.1| recombination protein F [Bacillus atrophaeus 1942]
          Length = 370

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 162/371 (43%), Gaps = 16/371 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L ++ +RNY  + L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++ R
Sbjct: 3   IQNLELTSYRNYERVELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   +A++EG     + SI ++    +  +  ++N +  + +      L      
Sbjct: 63  -----WDKDYAKIEGRVMKQNGSIPMQLVISKKGKKGKVNHIEQQKLSRYVGALNTIMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P    +  G    RRRFLD  +  + P +   +  +++++  RN  L +       D + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILTQRNHFLKQLQSRKQTDQTM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240
              +  Q+ E   K+ + R++    L                 + L     L+    +  
Sbjct: 178 LDVLTEQLIETAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYQTALEVSDPEDL 237

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             + + Y +     R+ +     TL GPHR D++  Y +      +GS G+Q+   + + 
Sbjct: 238 SKIGDSYQRAFSKLREKEIERGVTLSGPHRDDVLF-YVNGRDVQTYGSQGQQRTTALSLK 296

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD--SL 358
           LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T     D  +L
Sbjct: 297 LAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHETL 355

Query: 359 NETAKFMRISN 369
           ++   F R+ N
Sbjct: 356 HQAGMF-RVQN 365


>gi|289649102|ref|ZP_06480445.1| recombination protein F [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 367

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 165/348 (47%), Gaps = 22/348 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V +   
Sbjct: 6   VSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPVIQYEQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +  + P 
Sbjct: 66  PSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSS 185
             R+  G    RR+FLD  VF ++PR    M+ ++RL   ++ RN  L     D++  ++
Sbjct: 122 SFRLLEGAPKIRRQFLDWGVFHVEPRF---MVTWQRLQKALKQRNSWLRHDTLDAASQAA 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++     +I+  R   I AL   + E    E      L+L+ +    +D+     ++
Sbjct: 179 WDRELCSASDEIDEFRRAYIKALKP-VFEQTLSELVELEGLTLSYYRG--WDK-----EK 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +  L      D     T  GP R+DL +      A  I   S G+QK+V+  + +A  
Sbjct: 231 ELSTVLASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+
Sbjct: 289 HLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQ 336


>gi|229014659|ref|ZP_04171773.1| DNA replication and repair protein recF [Bacillus mycoides DSM
           2048]
 gi|229065152|ref|ZP_04200445.1| DNA replication and repair protein recF [Bacillus cereus AH603]
 gi|229170196|ref|ZP_04297882.1| DNA replication and repair protein recF [Bacillus cereus AH621]
 gi|228613297|gb|EEK70436.1| DNA replication and repair protein recF [Bacillus cereus AH621]
 gi|228716181|gb|EEL67900.1| DNA replication and repair protein recF [Bacillus cereus AH603]
 gi|228746670|gb|EEL96559.1| DNA replication and repair protein recF [Bacillus mycoides DSM
           2048]
          Length = 375

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 169/381 (44%), Gaps = 26/381 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   ITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   +  ++G     + S+ LE    +  +  ++N +  + + +    + +    
Sbjct: 63  -----WDEDYGNIKGRLQRRNSSVSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SW 182
           P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFLDGKF 236
                 Q+ E G KI   R E ++    L+ E+              +++     +D   
Sbjct: 178 LDVFTLQLIEHGAKILRKRFEFLH----LLQEWAAPIHRGISRGLEELEIVYKPSVDVSE 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +KE Y +     ++ +     TL+GPHR DL      K + +  GS G+Q+   
Sbjct: 234 SMDLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  SV  
Sbjct: 293 LSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTT--SVEG 349

Query: 357 SLNET---AKFMRISNHQALC 374
             +ET   AK + ++N    C
Sbjct: 350 IEHETLKEAKTIHVTNGTVDC 370


>gi|311112569|ref|YP_003983791.1| recombination protein F [Rothia dentocariosa ATCC 17931]
 gi|310944063|gb|ADP40357.1| recombination protein F [Rothia dentocariosa ATCC 17931]
          Length = 403

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 161/378 (42%), Gaps = 54/378 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++ ++R Y  L L   A  T+F+G NGVGKTNI+EAI + +     R +    + R
Sbjct: 3   LDHLSLLDYRTYPLLNLPLSAGVTVFLGPNGVGKTNIIEAIDYTANLSSHRVSHDGPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           +G+      + RV  + G      + E     S R  +IN        E     R     
Sbjct: 63  VGA---SRAYIRVRTVRGSQQTVTEFEIAPGASNRV-RINRAAPVRAREALGITRTVLFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-------TEGYFD 179
           P   ++  G    RRRF+D +  ++ P       ++ER++R RN LL       +    D
Sbjct: 119 PEDLQLVKGEPAGRRRFIDDLAVSLRPVVSGYRQEYERILRQRNSLLKTLQRRGSSAVDD 178

Query: 180 SSWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
            +   +++    Q+ +LG ++  AR  ++  L             PH++ +  G  DG  
Sbjct: 179 ENAMHTLDVWSEQLTQLGAQLLAARFRVLWLL------------LPHLRRAYAGLTDGSK 226

Query: 237 DQSFCA-----------------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
           D SF                         +K+  A++L + R  +     TL+GPHR D+
Sbjct: 227 DISFTYDSTVFPEITERGLEHVSRMSIDDIKDAMAQRLRERRTAELERGVTLVGPHRDDI 286

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAH---ARLISNTTGFAPILLLDEISAHLDEDK 330
            +     A+     S GE   V + + LA     R    + G +PIL+LD++ A LD ++
Sbjct: 287 TLLLGGLAVK-QFASHGESWSVALSLRLASWFVHRADDESPGSSPILILDDVFAELDSER 345

Query: 331 RNALFRIVTDIGSQIFMT 348
           R+ L  +V     Q+ +T
Sbjct: 346 RHRLGALVAQ-AEQVLLT 362


>gi|253987486|ref|YP_003038842.1| recombination protein F [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253778936|emb|CAQ82096.1| dna replication and repair protein recf [Photorhabdus asymbiotica]
          Length = 363

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 155/363 (42%), Gaps = 17/363 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN A   L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LFIRDFRNIADADLPLATGFNFLVGPNGSGKTSVLEAIYTLGHGRSFRSIQSGRVIRHNC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
             F     R+E  E   + SI L      D  VR   I+      + EL K L +  + P
Sbjct: 66  DEFV-LHGRLEQRENARESSIGLSKNRNGDSKVR---IDGSDGGKIAELAKMLPMQLITP 121

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
               + +G    RR F+D   F  DPR     ++ +RL++ RN  L +     S     +
Sbjct: 122 EGFTLLNGGPKYRRAFIDWGCFHNDPRFFSAWVNLKRLLKQRNAALRQ-VTHYSQIRPWD 180

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            ++A L  +IN  R E +  +   I +   K+  P   L  +      F Q +   + +Y
Sbjct: 181 QELAPLANQINQWRTEYVTNIIQGIADTC-KQFLPEFILRFS------FQQGWDK-ESDY 232

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
           A+ L    + D     T  GPH++DL +      +     S G+ K+++  + LA     
Sbjct: 233 AELLERQFERDRALTYTASGPHKADLRIRVEGTPVEDML-SRGQLKLLMCALRLAQGEYF 291

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366
           +   G   + LLD+ ++ LD  +R  L   +    +Q+F++  +   V D L+  ++  R
Sbjct: 292 TRQNGQQCLYLLDDFASELDAGRRQLLAERLKSTQAQVFVSAISPGQVTDMLDGNSRMFR 351

Query: 367 ISN 369
           + N
Sbjct: 352 VEN 354


>gi|228471347|ref|ZP_04056148.1| RecF protein [Porphyromonas uenonis 60-3]
 gi|228306848|gb|EEK15961.1| RecF protein [Porphyromonas uenonis 60-3]
          Length = 372

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 159/362 (43%), Gaps = 33/362 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  F+N A+    F  +   F G NG+GKTN+L+AI +LS  RG    +     R G+
Sbjct: 6   LSVINFKNVATANCHFAPKLNCFFGGNGMGKTNLLDAIHYLSVVRGHLGTTDRYAIRHGA 65

Query: 70  PSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                  A ++G     +G  D  I L    +RS +  +   +  R  D + ++  +  +
Sbjct: 66  QE-----AIIQGEYLWDDGQED-KISLRISAERSKQLSRNGRLYKRHSDHIGRY-PLVII 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   R+  G S ERRR +DR++   D  +   +I++ R +  RN +L     + +    
Sbjct: 119 SPHDQRLIRGGSDERRRSVDRILSQQDATYLANLINYNRALDQRNNMLRNQIHEPALMDI 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSFCA 242
           +E  +A  G+ +   R   +  L            F  I   L   ++     F     +
Sbjct: 179 LEETLATTGLAVTTMRQAYVEELVP---------TFDQIYQHLAAGVERAVLSFSAGSAS 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSD---LIVDYCDKAITIAHGSTGEQKVVLVGI 299
             EE  + L +GR+ D     T  G HR D   L+ +   + I    GS G+ K  L+  
Sbjct: 230 TAEEQLRILRNGRQRDYEYGFTATGCHRDDFEMLLGENLMRKI----GSEGQNKTYLIAY 285

Query: 300 FLAHARLISN--TTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFD 356
            LA  R +    T   AP+LLLD+I   LD D+   +  +V TD   QIF+T T++   D
Sbjct: 286 KLAEYRYLQQHLTNQTAPLLLLDDIFDKLDSDRVERIIELVATDTFGQIFITDTNRKYLD 345

Query: 357 SL 358
            +
Sbjct: 346 EI 347


>gi|327478615|gb|AEA81925.1| recombination protein F [Pseudomonas stutzeri DSM 4166]
          Length = 370

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 159/356 (44%), Gaps = 22/356 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+++  RN   + L    +  I  GDNG GKT++LEAI  L   R FR      V
Sbjct: 1   MSLSRLSVTGVRNLHPVTLTPSPRINILFGDNGSGKTSLLEAIHLLGLARSFRSIRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADI-SIKLETRDDRS--VRCLQINDVVIRVVDELNKHLR 121
                P+  + F +VE    L D  S  L    DRS  VR ++I+   +R   EL   L 
Sbjct: 61  ITYEQPAC-TVFGQVE----LPDQHSRALGVSRDRSGEVR-IRIDGQSVRSAAELADTLP 114

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           +  + P   R+  G    RR+FLD  VF ++ R        ++ +R RN  L  G  D +
Sbjct: 115 LQLINPDSFRLLEGAPKLRRQFLDWGVFHVEHRFMSAWQRLQQALRQRNSWLRHGTLDGA 174

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
             ++   +++    +I+  R   I AL   + E   K       L+L+ +     D+   
Sbjct: 175 SDAAWSRELSLASDEIDGYRRAYIQALKP-VFETTLKALLDMDGLTLSYYRGWDKDR--- 230

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGI 299
            L +  A  L   R M      T  GP R+DL   V   + A  +   S G+QK+V+  +
Sbjct: 231 PLVDVLASSLERDRAMG----HTQSGPQRADLRLKVGSHNAAEVL---SRGQQKLVVCAL 283

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            +A   L+S       I L+D++ + LD   R AL R++  +  Q+F+T  D +V 
Sbjct: 284 RIAQGHLVSEAKRGQCIYLVDDLPSELDAQHRLALCRLLEQLNCQVFITCVDSTVL 339


>gi|310817865|ref|YP_003950223.1| DNA replication and repair protein RecF [Stigmatella aurantiaca
           DW4/3-1]
 gi|309390937|gb|ADO68396.1| DNA replication and repair protein RecF [Stigmatella aurantiaca
           DW4/3-1]
          Length = 481

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 164/360 (45%), Gaps = 21/360 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L    FRN   + L      TI VG NG GKTN+LEA+ FL+  +  R    A++
Sbjct: 1   MRLLALQAQNFRNLHQVSLAPSPHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G     +  ARV G   L     ++       VR   ++      ++E    + +  
Sbjct: 61  VRWG-----TKGARVSGRFLLKGAEREISVEVGGGVRQAFVDGKKASSLEEYFGGVAVVA 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
             P    +  G    RR FLDR VF   P   +   D+ R ++ RNRLL +G   ++++ 
Sbjct: 116 FTPDDLEVVKGGPEARRTFLDRAVFNRFPAFLKESRDYARALKNRNRLLRDGPAAEAAYL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT----GFLDGKFDQS 239
            + +  +A  G ++ + R  ++  L+        +  F  I  ++     G+      Q 
Sbjct: 176 DAYDETLARAGARVYVRRRALMAELAPRA-----QATFASIGRTVDPAAYGYHPAHLAQE 230

Query: 240 FCALKE----EYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           F  + E    +   +   GR+   + R  T +GPH  D+ V    ++   A+ S G+Q+ 
Sbjct: 231 FAEVDEVRLADALLEALAGRRRRDLERGFTSVGPHVDDVAVTLGGRSAR-AYASQGQQRA 289

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           +++G  +A    +    GF P+LLLD++S+ LD ++   L   +   G+Q+F+T TD S+
Sbjct: 290 LVLGWKIAEIENLHAALGFLPLLLLDDVSSELDPERNAYLMGYLAASGAQVFLTTTDASL 349


>gi|261403880|ref|YP_003240121.1| DNA replication and repair protein RecF [Paenibacillus sp.
           Y412MC10]
 gi|261280343|gb|ACX62314.1| DNA replication and repair protein RecF [Paenibacillus sp.
           Y412MC10]
          Length = 370

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 157/360 (43%), Gaps = 18/360 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++  +RNY  L+L       + +G N  GKTN++EA+  L+  +  R +   D   
Sbjct: 3   VKNVSLQHYRNYEKLQLEAFGDVNLIIGRNAQGKTNLMEALFVLALTKSHRTSK--DREL 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           IG   F  + A +         +++LE    +  +  +IN +  R + +    L +    
Sbjct: 61  IG---FEQSSAHISAEIDRKYGTLRLELSLSQQGKKAKINGLEQRKLSDFIGSLNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P    I  G    RRRFLD  +  + P +   +  +++++  RN LL +    G  + + 
Sbjct: 118 PEDLEIVKGTPGVRRRFLDMEIGQVAPSYLFHLQQYQKVLVQRNNLLKQLWGKGSTEQAM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLS-LTGFLDGKFDQS 239
                +Q+AE GVKI   R + I  L        Q        + L  L  F D + ++ 
Sbjct: 178 LEIWNSQLAEHGVKIVKKRKQFIKKLQKWAESIHQGITNGLEDLSLHYLPSFADAE-EED 236

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E +  KL   ++ +     TL GPHR DL   Y +      +GS G+Q+   + +
Sbjct: 237 EAVLFETFMIKLSQMKEQEIRRGMTLAGPHRDDLAF-YINGKEVQTYGSQGQQRTTALSL 295

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   LI    G  P+LLLD++ + LD  ++  L         Q F+T T     +SLN
Sbjct: 296 KLAEIELIQEEIGEYPVLLLDDVLSELDPYRQTQLIETFQS-KVQTFITATG---IESLN 351


>gi|218961815|ref|YP_001741590.1| putative putative DNA repair and genetic recombination (recF-like)
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730472|emb|CAO81384.1| putative putative DNA repair and genetic recombination (recF-like)
           [Candidatus Cloacamonas acidaminovorans]
          Length = 358

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 153/335 (45%), Gaps = 42/335 (12%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           + +  FR+Y      F+ Q  + +G NG GKTN+LEAI++ S G+  R     ++   G 
Sbjct: 6   IELENFRSYRQNEFDFNPQGCLIIGPNGCGKTNLLEAIAYCSIGKSIRFHHDEELLNFG- 64

Query: 70  PSFFSTFARVEGM---EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 F RV+ +   +      + L   D    + L+I+++ IR +  L + +++ +  
Sbjct: 65  ----GQFFRVQSLFISDQQTPKKVSLSYADQH--KLLKIDELPIRQLSSLFEVVKVIYCA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SSWC 183
           P    + SG    RR++ D  +  + P +   +  F  +++ RN +L   Y     +SW 
Sbjct: 119 PEDHLLISGSPRFRRQYFDLAISQLYPPYINVLRHFLHIVQQRNAMLKRNYSRAEITSWN 178

Query: 184 SSIEAQMAELG-------VKINIARVE----MINALSSLIMEYVQKENFPHIKLSLTGFL 232
            S  + +AE+         ++N A  E    +  A +++ + Y+     P +KL L    
Sbjct: 179 LSFASSLAEVWNYRNRYLKQVNTAFQETFKDIFPASTAISLAYI-----PSLKLPLE--- 230

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                    +  EE  K L    + + + +R+L+G H  D       + + + + S G++
Sbjct: 231 ---------SSPEEIIKHLATIEEREKLLQRSLVGAHLDDYEFKLKGRKM-LTYASQGQK 280

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           ++ ++ + L  ARLI   TG  PI+L D+I A LD
Sbjct: 281 RIAVIILKLIQARLIEKVTGIKPIMLFDDIFAELD 315


>gi|326335178|ref|ZP_08201375.1| recombination protein F [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692708|gb|EGD34650.1| recombination protein F [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 378

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 168/361 (46%), Gaps = 38/361 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  F+N  +    F  +    VG+NGVGKTN L+AI  LS  +     SY + T 
Sbjct: 22  LKQLYILNFKNIENKEFSFSPKLNCLVGNNGVGKTNSLDAIYHLSMTK-----SYFNTTT 76

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHL- 120
           + +      F  +EG       + + E R +  V  ++     I     +V ++L++H+ 
Sbjct: 77  LYNIRLGEDFYLIEG-------NFQKEDRQEHIVCSVKRGQKKILKRNGKVYEKLSEHIG 129

Query: 121 --RISWLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--- 174
              I  + PS  D I  G S  RRRFLD M+  I P +   ++ + +++  RN LL    
Sbjct: 130 AFPIVIVSPSDRDLIHEG-SETRRRFLDSMLSQIQPHYLEDLLHYNKILSQRNSLLKIMA 188

Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFL 232
            + YFD       + Q++  G KI   R    +A  +  + Y Q++   + +LS     +
Sbjct: 189 EKQYFDDITLDIYDEQLSLYGEKIFQER----SAFLTSFLPYFQEQ---YKRLSQGRETV 241

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           D  ++ S    K +   K     + D + + T +G H+ DLI    ++ +    GS G+Q
Sbjct: 242 DIHYESSLKKEKLKTLLK--RSIEQDRIVQYTTVGIHKDDLIFSINNQPVK-KFGSQGQQ 298

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD 351
           K  L+ + LA    I   T   PILLLD+I   LD  +   L  +VT+    Q+F++ TD
Sbjct: 299 KSFLIALKLAQFHSIYKQTSVTPILLLDDIFDKLDAQRVTQLIHLVTEAPFGQVFISDTD 358

Query: 352 K 352
           K
Sbjct: 359 K 359


>gi|301629590|ref|XP_002943921.1| PREDICTED: DNA replication and repair protein recF-like [Xenopus
           (Silurana) tropicalis]
          Length = 367

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 157/347 (45%), Gaps = 14/347 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   +      +  I  G NG GKT++LEAI  L   R FR A    V +   
Sbjct: 6   VSVTAVRNLHPVTFSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPVIQYEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +  + F +VE  EG    S+ + +RD +    ++I+    R   +L + L +  + P  
Sbjct: 66  LAC-TVFGQVELAEG-GHSSLGI-SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPDS 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D++  ++ + +
Sbjct: 123 FRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQAAWDRE 182

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +     +I+  R   I AL   + E    E      L+L+ +     D+   A+      
Sbjct: 183 LCLASAEIDEYRRAYIKALKP-VFEQTLSELLELEGLTLSYYRGWDKDRELSAV------ 235

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
            L    + D     T  GP R+DL +      A  I   S G+QK+V+  + +A   L+S
Sbjct: 236 -LATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLVS 292

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
                  I L+D++ + LDE  R AL R++ D+  Q+F+T  D  + 
Sbjct: 293 QARRGQCIYLVDDLPSELDEQHRRALCRLLEDLRCQVFITCVDHELL 339


>gi|118587496|ref|ZP_01544921.1| DNA repair protein RecF [Oenococcus oeni ATCC BAA-1163]
 gi|118432146|gb|EAV38887.1| DNA repair protein RecF [Oenococcus oeni ATCC BAA-1163]
          Length = 373

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 156/356 (43%), Gaps = 29/356 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRNY SL++ F     + +GDN  GKTN+LEAI  LS  R  R  +  D+    S
Sbjct: 6   LKLKDFRNYKSLQVDFSNSINVLIGDNAQGKTNLLEAIYILSMARSHRDNNDRDLINWSS 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F      V+   G       LE R  ++ + + +N +    + +   +L      P  
Sbjct: 66  -DFSDITGEVQSKMG----KFPLEVRITKTGKKVFVNHLTENRLSDYIGNLHTVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-------TEGYFDSSW 182
             +  G    RR+F+D     +   +   ++ +  +++ RN  L            D  +
Sbjct: 121 LDLVKGSPGVRRKFIDSEFGQMSANYLFNLLQYRSVLKNRNAYLKNIKWIGNNPKIDEDY 180

Query: 183 CSSIEAQMAELGVKINIARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
              +  Q+ + G +I   R  ++  L   S  I + + +     IK +    +D   DQS
Sbjct: 181 LKVLNDQLIDFGSEIIFQRFVLVKELEKYSYQIHKAISRNEKLTIKYASFSGID---DQS 237

Query: 240 FCALKEEYAKKLFDGRKMDSMSRR-----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
               KEE + K+F+ + + + +R      T +GPH  DL      K +  +  S G+Q+ 
Sbjct: 238 ---TKEEIS-KIFNNQLLKNKTRELFLKSTSVGPHHDDLKFSINGKEVG-SFASQGQQRT 292

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
             + + LA   ++   TG  PILLLD++ + LD D++  L   + D   Q F+T T
Sbjct: 293 TALSVRLAEIEMMKYETGEYPILLLDDVLSELDGDRQTQLLNFIQD-KVQTFLTTT 347


>gi|227113114|ref|ZP_03826770.1| recombination protein F [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|253686412|ref|YP_003015602.1| DNA replication and repair protein RecF [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259563667|sp|C6DGH9|RECF_PECCP RecName: Full=DNA replication and repair protein recF
 gi|251752990|gb|ACT11066.1| DNA replication and repair protein RecF [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 361

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 159/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRVIRHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P F     R++G E    + +    + D  VR   I+      V EL + L I  + P  
Sbjct: 66  PEFV-LHGRIDGTETERSVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +P       + +RL+R RN  L +  ++    +W    
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFAAWSNMKRLLRQRNAALRQVSHYGQLRAW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R +   A+++ I      +  P   LS + F  G   +S      E
Sbjct: 178 DQELVPLAERISEWRAQYSAAIANDIATTC-TQFLPEFSLSFS-FQRGWDKES------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D M   T +GPH++D  +     A+     S G+ K+++  + LA    
Sbjct: 230 YAELLERQFERDRMLGYTALGPHKADFRIRASGVAVEDML-SRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++  + + + D + E  K  
Sbjct: 289 LTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMVGEKGKMF 348

Query: 366 RISN 369
           R+  
Sbjct: 349 RVEQ 352


>gi|329925052|ref|ZP_08279996.1| DNA replication and repair protein RecF [Paenibacillus sp. HGF5]
 gi|328940171|gb|EGG36503.1| DNA replication and repair protein RecF [Paenibacillus sp. HGF5]
          Length = 370

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 157/360 (43%), Gaps = 18/360 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++  +RNY  L+L       + +G N  GKTN++EA+  L+  +  R +   D   
Sbjct: 3   VKNVSLQHYRNYEKLQLEAFGDVNLIIGRNAQGKTNLMEALFVLALTKSHRTSK--DREL 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           IG   F  + A +         +++LE    +  +  +IN +  R + +    L +    
Sbjct: 61  IG---FEQSSAHISAEIDRKYGTLRLELSLSQQGKKAKINGLEQRKLSDFIGSLNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P    I  G    RRRFLD  +  + P +   +  +++++  RN LL +    G  + + 
Sbjct: 118 PEDLEIVKGTPGVRRRFLDMEIGQVAPSYLFHLQQYQKVLVQRNNLLKQLWGKGSAEQAM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLS-LTGFLDGKFDQS 239
                +Q+AE GVKI   R + I  L        Q        + L  L  F D + ++ 
Sbjct: 178 LEIWNSQLAEHGVKIVKKRKQFIKKLQKWAESIHQGITNGLEDLSLHYLPSFADAE-EED 236

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E +  KL   ++ +     TL GPHR DL   Y +      +GS G+Q+   + +
Sbjct: 237 EAVLFETFMIKLSQMKEQEIRRGMTLAGPHRDDLAF-YINGKEVQTYGSQGQQRTTALSL 295

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   LI    G  P+LLLD++ + LD  ++  L         Q F+T T     +SLN
Sbjct: 296 KLAEIELIQEEIGEYPVLLLDDVLSELDPYRQTQLIETFQS-KVQTFITATG---IESLN 351


>gi|24371610|ref|NP_715652.1| DNA replication and repair protein RecF [Shewanella oneidensis
           MR-1]
 gi|51316466|sp|Q8EKT0|RECF_SHEON RecName: Full=DNA replication and repair protein recF
 gi|24345360|gb|AAN53097.1|AE015452_10 DNA replication and repair protein RecF [Shewanella oneidensis
           MR-1]
          Length = 360

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 166/368 (45%), Gaps = 37/368 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LNI  FRN    +L       +  G NG GKT+ILEAI FL  GR FR      V     
Sbjct: 6   LNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-ND 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA +    G + I ++     +  V+   I+   ++ +  L + L I  + P S
Sbjct: 65  QDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------YFDSS 181
              +F G    RR+F+D   F  DP+     ++  R+++ RN++L  G       Y+D  
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQMLRNGSPYDQIQYWDRE 180

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQS 239
           +    E Q+ E+       R   +++L+ L+   +  E  P   +K+S T   D K D  
Sbjct: 181 FIRYTE-QVTEI-------RNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDSKTD-- 229

Query: 240 FCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           F  L E +Y + L  G         T+ GPH++DL +         A  S G+ K+++  
Sbjct: 230 FAQLLESQYPRDLATG--------HTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCA 280

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357
           + +A  +L+        I L+D++ + LD   R  L + + D G+Q+F+T  +  ++ DS
Sbjct: 281 LRIAQGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDS 340

Query: 358 LNETAKFM 365
           L+     M
Sbjct: 341 LHTPPSRM 348


>gi|221632725|ref|YP_002521946.1| DNA replication and repair protein recF [Thermomicrobium roseum DSM
           5159]
 gi|254790496|sp|B9KZ04|RECF_THERP RecName: Full=DNA replication and repair protein recF
 gi|221155632|gb|ACM04759.1| DNA replication and repair protein recF [Thermomicrobium roseum DSM
           5159]
          Length = 396

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 170/389 (43%), Gaps = 52/389 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA------S 60
           ++ L + EFR +  L LV   +    VG NG GKT+++EA+  L+  + FR +       
Sbjct: 3   VRSLELEEFRCFRHLHLVLPDRGLRLVGANGSGKTSLIEALYMLATTKSFRASLERHLVH 62

Query: 61  YADVTRIGSPSFF------------STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            +  + +G P +             ST   V  ++  +    KL  RD RS+R +     
Sbjct: 63  RSSGSELGIPPYARLAAELFTETERSTLEIVLMVDPASGTVRKLYRRDGRSLRAV----- 117

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
                 E    LR+    P    + +G   +RRR+LD ++  ID  + R +  + R++  
Sbjct: 118 ------EFVGTLRVVLFSPEDLELVTGSPQQRRRYLDTILSTIDRAYLRALARYTRILEH 171

Query: 169 RNRLLT-----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           RN LL      +        +  + Q+   G  + +AR+  +      + ++ Q  +   
Sbjct: 172 RNSLLKSLAERDQRAADEQLAYWDEQLVTYGAYLLVARLRFLAEWGPRLRDHFQALDT-Q 230

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR--------------KMDSMSR-RTLIGP 268
            ++  T +L    D     L E  A+++ D +              + D + R  TL+GP
Sbjct: 231 AQVLTTAYLPS-IDLPESLLSELAAREVADAQLIVGARYRETLERLRPDELRRGSTLVGP 289

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           HR D+     ++ +T A GS G Q++ ++   LA   +I   T   P+LLLD+  + LD+
Sbjct: 290 HRDDVEFLLGEEPLT-AFGSRGVQRLAVIAAKLAEIAVIHRVTDDWPVLLLDDALSELDQ 348

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
             R  L   ++ + +Q+ +T T+  V ++
Sbjct: 349 QHRAHLLATLSALPAQLILTATESDVLET 377


>gi|159035678|ref|YP_001534931.1| recombination protein F [Salinispora arenicola CNS-205]
 gi|189039637|sp|A8LVH1|RECF_SALAI RecName: Full=DNA replication and repair protein recF
 gi|157914513|gb|ABV95940.1| DNA replication and repair protein RecF [Salinispora arenicola
           CNS-205]
          Length = 376

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 160/363 (44%), Gaps = 36/363 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR+Y  + +  +    + VG NGVGKTN++EA+ +++     R A+ A + R
Sbjct: 3   VRRLELVDFRSYERVGVDLEPGANVLVGHNGVGKTNLIEALGYVATLDSHRVATDAPLVR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +G+ +     A V EG E    + I+LE    R+ R         R  D L   LR+   
Sbjct: 63  MGAGAAVIRCAVVHEGRE----LLIELEIVPGRANRARLGRSPARRARDVLGA-LRLVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178
            P    +  G   ERRR+LD ++    PR+     D+ER++R RN LL   Y        
Sbjct: 118 APEDLELVRGDPAERRRYLDDLLVLRQPRYAGVRADYERVVRQRNALLRTAYLARKTGGT 177

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----------PHIK 225
              D S  +  +  +A  G ++   R++++ AL+  +                   P ++
Sbjct: 178 RGGDLSTLAVWDDHLARHGAELLAGRLDLVAALAPHVTRAYDAVAAGTGAAGIAYRPSVE 237

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           L                L    +  L  GR  +     TL+GPHR DL +          
Sbjct: 238 LPTP-------TTDRADLTAALSAALAAGRSAEIERGTTLVGPHRDDLTLTLGPLPAK-G 289

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           + S GE   + + + LA   L+    G  P+L+LD++ A LD  +R+ L ++V D  SQ+
Sbjct: 290 YASHGESWSLALALRLAGYDLL-RVDGIEPVLVLDDVFAELDTGRRDRLAQLVGD-ASQL 347

Query: 346 FMT 348
            +T
Sbjct: 348 LVT 350


>gi|291571835|dbj|BAI94107.1| DNA replication and repair protein RecF [Arthrospira platensis
           NIES-39]
          Length = 379

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 180/368 (48%), Gaps = 30/368 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++ +FRNY +  + FDA  TI VG+N  GK+N+LEA+  LS  +  R     D+  
Sbjct: 3   LKTLHLRQFRNYEAQDVAFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRVNRDRDLV- 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           + + +     A +E      D+++ L ++  R+V    IN   ++      +HL    ++
Sbjct: 62  LDNHAIAQITATLERDSSTLDLALTLRSQGRRTV---AINGQSVK------RHLDFLSIL 112

Query: 127 -----PSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                 S+D  +  G   ERR +LDR++  ++P +   +  + +++R RN LL  G    
Sbjct: 113 NVVQFSSLDLELVRGGPAERRHWLDRLLIQLEPVYAYMLDQYNQVLRQRNALLRRGPMGG 172

Query: 181 SWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD---- 233
           +    +   +AQ+A  G ++   R  +I  L  L   + Q  +     L++T   +    
Sbjct: 173 TTPEELAVWDAQLAVTGARVLRRRDRVIERLEPLARMWHQSISGSRETLNITYQPNIEPP 232

Query: 234 GKFDQSFCALKEEYAKKLF----DGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGS 288
            K  Q +     E  ++ F      R +   S+  TL+GPHR D+I    ++     +GS
Sbjct: 233 CKPQQRWSRWPPEQVQQAFLTKISTRAIAERSQGLTLVGPHRDDVIFT-INQTPARQYGS 291

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           +G+Q+ +++ + LA  +LI +  G  P+LLLD++ A LD  ++N L + +++   Q  +T
Sbjct: 292 SGQQRTLVLALKLAELQLIESVIGEPPLLLLDDVLAELDPHRQNQLLQAISE-RFQTLIT 350

Query: 349 GTDKSVFD 356
            T    FD
Sbjct: 351 TTHLGAFD 358


>gi|111020658|ref|YP_703630.1| recombination protein F [Rhodococcus jostii RHA1]
 gi|123340329|sp|Q0SAG4|RECF_RHOSR RecName: Full=DNA replication and repair protein recF
 gi|110820188|gb|ABG95472.1| DNA replication and repair protein [Rhodococcus jostii RHA1]
          Length = 410

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 174/387 (44%), Gaps = 42/387 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++ +FR++ +L L      T+FVG NG GKTN+LEA+ +LS     R +S A + R
Sbjct: 3   VRALSLRDFRSWDALGLTLRPGCTVFVGPNGHGKTNVLEALGYLSTLSSHRVSSDAPLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+   F+    V       ++++ LE  + +S R  +IN    R   E+   L+     
Sbjct: 63  TGTGQAFAGATVVNAGR---ELTVDLELNEGKSNRA-RINQSPTRRPREILGILQTVLFA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------------ 174
           P    +  G   +RRR+LD ++ +  PR      D++R++R R+ LL             
Sbjct: 119 PEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDRVLRQRSALLKTAGGALRRVSRG 178

Query: 175 EGYFDSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFP--- 222
            G       S++      +  +A  G ++   R+ +++ L+  + E  Q    E+ P   
Sbjct: 179 SGRPSEDGASALATLEVWDGHLAAHGAQLLAGRLHLVHDLAPHLAESYQSLAPESRPASI 238

Query: 223 HIKLSLTGFLDGKFDQS--------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
             + SL   L  +F +            L+E + ++L   R  +      L+GPHR DL 
Sbjct: 239 RYRSSLGSSLPPEFTEPARVPEAGDIAFLEERFLQELSVMRSKEIERGVCLVGPHRDDLE 298

Query: 275 VDYCDKAITIAHG--STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           +   D   T A G  S GE     + + LA   L+  + G  P+L+LD++ A LD  +R 
Sbjct: 299 LHLGD---TPAKGFASHGESWSFALSLRLAGFALL-RSDGSDPVLMLDDVFAELDRRRRR 354

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLN 359
           AL ++  D    +      + V + L+
Sbjct: 355 ALAKVALDAEQVLITAAVPEDVPEELD 381


>gi|50123357|ref|YP_052524.1| recombination protein F [Pectobacterium atrosepticum SCRI1043]
 gi|81693014|sp|Q6CYR6|RECF_ERWCT RecName: Full=DNA replication and repair protein recF
 gi|49613883|emb|CAG77335.1| DNA replication and repair protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 361

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 158/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRVIRHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P F     R++G E    + +    + D  VR   I+      V EL + L I  + P  
Sbjct: 66  PEFV-LHGRIDGTETERAVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +P       + +RL R RN  L +  ++    +W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFAAWSNMKRLQRQRNAALRQVSHYGQLRAW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R +   A+++ I      +  P   LS + F  G   +S      E
Sbjct: 178 DQELVPLAERISEWRAQYSAAIANDIAATC-TQFLPEFSLSFS-FQRGWDKES------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D M   T +GPH++D  +     A+     S G+ K+++  + LA    
Sbjct: 230 YAELLERQFERDRMLGYTALGPHKADFRIRTSGVAVEDML-SRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++  + + + D + E  K  
Sbjct: 289 LTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMIGEKGKMF 348

Query: 366 RISN 369
           R+  
Sbjct: 349 RVEQ 352


>gi|117918470|ref|YP_867662.1| recombination protein F [Shewanella sp. ANA-3]
 gi|166221866|sp|A0KR37|RECF_SHESA RecName: Full=DNA replication and repair protein recF
 gi|117610802|gb|ABK46256.1| DNA replication and repair protein RecF [Shewanella sp. ANA-3]
          Length = 360

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 165/362 (45%), Gaps = 37/362 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LNI  FRN    +L   +   +  G NG GKT+ILEAI FL  GR FR      V     
Sbjct: 6   LNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-NE 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA +    G + I ++     +  V+   I+   ++ +  L + L I  + P S
Sbjct: 65  QDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------YFDSS 181
              +F G    RR+F+D   F  DP+     ++  R+++ RN+LL          Y+D  
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRNNSSYDQIQYWDRE 180

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQS 239
           +    E Q+ E+       R   +++L+ L+   +  E  P   +K+S T   D K D  
Sbjct: 181 FVRYTE-QVTEI-------RNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDSKTD-- 229

Query: 240 FCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           F  L E +Y + L  G         T+ GPH++DL +         A  S G+ K+++  
Sbjct: 230 FAQLLESQYPRDLATG--------HTVSGPHKADLRLRVGSLPAQDAM-SRGQLKLLVCA 280

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357
           + +A  +L+        I L+D++ + LD   R  L + + D G+Q+F+T  +  ++ DS
Sbjct: 281 LRIAQGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDS 340

Query: 358 LN 359
           L+
Sbjct: 341 LH 342


>gi|114045516|ref|YP_736066.1| recombination protein F [Shewanella sp. MR-7]
 gi|123131882|sp|Q0I0U6|RECF_SHESR RecName: Full=DNA replication and repair protein recF
 gi|113886958|gb|ABI41009.1| DNA replication and repair protein RecF [Shewanella sp. MR-7]
          Length = 360

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 166/368 (45%), Gaps = 37/368 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LNI  FRN    +L   +   +  G NG GKT+ILEAI FL  GR FR      V     
Sbjct: 6   LNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-NE 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA +    G + I ++     +  V+   I+   ++ +  L + L I  + P S
Sbjct: 65  QDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------YFDSS 181
              +F G    RR+F+D   F  DP+     ++  R+++ RN+LL          Y+D  
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRNNSSYEQIQYWDRE 180

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQS 239
           +    E Q+ E+       R   +++L+ L+   +  E  P   +K+S T   D K D  
Sbjct: 181 FVRYTE-QVTEI-------RNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDSKTD-- 229

Query: 240 FCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           F  L E +Y + L  G         T+ GPH++DL +         A  S G+ K+++  
Sbjct: 230 FAQLLESQYPRDLATG--------HTVSGPHKADLRLRVGSLPAQDAL-SRGQLKLLVCA 280

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357
           + +A  +L+        I L+D++ + LD   R  L + + D G+Q+F+T  +  ++ DS
Sbjct: 281 LRIAQGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDS 340

Query: 358 LNETAKFM 365
           L+     M
Sbjct: 341 LHTPPSRM 348


>gi|328675921|gb|AEB28596.1| DNA recombination and repair protein RecF [Francisella cf. novicida
           3523]
          Length = 349

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 160/356 (44%), Gaps = 15/356 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRN       F       VG NG GKT+ILE+I FLS  R FR +    +    +
Sbjct: 6   LRLQNFRNIPFKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIVNHNA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F   + +    +   +I+I L +R   S    ++N  + +   E+ ++L I  + P  
Sbjct: 66  DEFI-IYTKAYNPD---EITISL-SRKKNSNNISKLNLEIQKNHTEITRNLPIQLINPES 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             I +  + +R + LD   F +D    +     + L++ RN  L + Y   ++  SI+ +
Sbjct: 121 FNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLIKQRNSALKQNY-PYNYILSIDKK 179

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           ++E    ++  R      L   + E + + N P +KL +  F      ++   + EE   
Sbjct: 180 LSEFAEILDHKRQAYFTKLKPKVYEILAEFN-PELKLDIEYFRGWNSHKNLYQVLEE--- 235

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
                   D+  + T  GPH++D+++    K I     S G+QK+++  I LA   + + 
Sbjct: 236 ----SFNYDNKYKITNHGPHKADIVLSVNHKPIQDIF-SRGQQKLLICAIKLAQGEIHNL 290

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
                 I L+D+I++ LD      LF  +  + SQ+F+T T+K+  +   +T  ++
Sbjct: 291 ENYNKCIYLIDDITSELDNTHTQTLFNYLRQLKSQVFITTTEKNKINEFIDTNSYI 346


>gi|254930864|ref|ZP_05264223.1| recombination protein F [Listeria monocytogenes HPB2262]
 gi|293582409|gb|EFF94441.1| recombination protein F [Listeria monocytogenes HPB2262]
 gi|328476148|gb|EGF46854.1| recombination protein F [Listeria monocytogenes 220]
 gi|332310338|gb|EGJ23433.1| DNA replication and repair protein recF [Listeria monocytogenes
           str. Scott A]
          Length = 370

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 162/371 (43%), Gaps = 48/371 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       S+ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q 
Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           A++ + +   R + I  L                  +    +  +  +    LK EY   
Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228

Query: 251 L-FDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           +  +G           +K++S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 ITLNGDDPEVWKADLLQKIESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + I LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  
Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346

Query: 353 SVFDSLNETAK 363
           S  D  +ET K
Sbjct: 347 SGID--HETLK 355


>gi|121998015|ref|YP_001002802.1| DNA replication and repair protein RecF [Halorhodospira halophila
           SL1]
 gi|121589420|gb|ABM62000.1| DNA replication and repair protein RecF [Halorhodospira halophila
           SL1]
          Length = 349

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 154/350 (44%), Gaps = 25/350 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRN A  +L       +  G NG GKT++LEAI FLS  R FR  +  +   IG 
Sbjct: 4   LEVHGFRNLADTQLRPHPHLNVVTGPNGAGKTSLLEAIYFLSRVRSFR--TRQNDRLIGW 61

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +  +    V G + L        TR       L++N         L   L +  +    
Sbjct: 62  GAEEARVVAVRGHDRLGAARTPGHTR-------LRLNGADAHTRSALAARLPVQLMNTEH 114

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSIE 187
            R+       RR+FLD   F ++P +R     ++  +R RN  L  G    + +W     
Sbjct: 115 QRLLLDGPRVRRQFLDWGTFHLEPDYRELAQRYQHALRQRNAALRVGDRRSEQAWTPV-- 172

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
             +      +++AR   I AL  +  E+ ++       L L   L+ ++ +   A +  +
Sbjct: 173 --LIRCAAAVDVARQRFIEALRPIWSEFARQ------WLGLES-LELRYYRG-AAAELPW 222

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
            + L +  + D  +  T  GPHR+DLI+   D+       S G+QK+++V + +A  +L 
Sbjct: 223 ERVLDEQLERDRTAGFTHRGPHRADLILSR-DRIPAADALSRGQQKLLVVALLIAEVKLW 281

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           S   G  P+LL+D++ A LD    + +   VT   +Q+F+T  D +   +
Sbjct: 282 SR-QGLTPVLLIDDLPAELDPAHLHTVLDTVTGDPTQVFLTAIDGAALPT 330


>gi|113968349|ref|YP_732142.1| recombination protein F [Shewanella sp. MR-4]
 gi|123325558|sp|Q0HPD2|RECF_SHESM RecName: Full=DNA replication and repair protein recF
 gi|113883033|gb|ABI37085.1| DNA replication and repair protein RecF [Shewanella sp. MR-4]
          Length = 360

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 166/368 (45%), Gaps = 37/368 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LNI  FRN    +L   +   +  G NG GKT+ILEAI FL  GR FR      V     
Sbjct: 6   LNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-NE 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA +    G + I ++     +  V+   I+   ++ +  L + L I  + P S
Sbjct: 65  QDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------YFDSS 181
              +F G    RR+F+D   F  DP+     ++  R+++ RN+LL          Y+D  
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRNNSSYDQIQYWDRE 180

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQS 239
           +    E Q+ E+       R   +++L+ L+   +  E  P   +K+S T   D K D  
Sbjct: 181 FVRYTE-QVTEI-------RNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDSKTD-- 229

Query: 240 FCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           F  L E +Y + L  G         T+ GPH++DL +         A  S G+ K+++  
Sbjct: 230 FAQLLESQYPRDLATG--------HTVSGPHKADLRLRVGSLPAQDAL-SRGQLKLLVCA 280

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357
           + +A  +L+        I L+D++ + LD   R  L + + D G+Q+F+T  +  ++ DS
Sbjct: 281 LRIAQGKLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDS 340

Query: 358 LNETAKFM 365
           L+     M
Sbjct: 341 LHTPPSRM 348


>gi|312878755|ref|ZP_07738555.1| DNA replication and repair protein RecF [Aminomonas paucivorans DSM
           12260]
 gi|310782046|gb|EFQ22444.1| DNA replication and repair protein RecF [Aminomonas paucivorans DSM
           12260]
          Length = 352

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 158/350 (45%), Gaps = 24/350 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ + L +  +RN     + +     + +G NG GKTN+LEA+  L+    F     + V
Sbjct: 1   MRFRDLEVHRYRNLEDREITWSPGINVLLGPNGAGKTNLLEAMDLLAGWGPFGDRPASVV 60

Query: 65  TRIGSPSFFSTFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              GS   +    R+EG E  +A + ++  T        L+     +R   ++   L + 
Sbjct: 61  PWEGSGDTW-VRGRLEGEETAVASVQVRGRT-------LLRWGGSPVRAT-QMRTSLPVL 111

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
             +P    +  G + +RRR LD++   + P +  R+ D+ R +R R   L  G  D    
Sbjct: 112 AFLPDSLSVVEGSASQRRRLLDQVGALVYPPYALRLHDYRRALRQRTACLRRGERDDL-- 169

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSLTGFLDGKFDQSFCA 242
             +   +A LGV +  AR ++   L+S +       + P  ++    G   G +++    
Sbjct: 170 --VLRVLAPLGVWLWRAREDVARRLASRLEGVGPLLSAPLELRYHRGG---GGWEEDS-- 222

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFL 301
            KE++ + L   R  + +SR  L+GP R DL+  +    I  A   S G ++   V + L
Sbjct: 223 -KEDFRRGLLRHRDRERLSRTPLVGPQRDDLV--FLSGKIPAAERFSRGHRRRAAVALML 279

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           A A ++ +     P+LLLDE++A LD + +  LF  +   G Q+F    D
Sbjct: 280 ASAGVVRDALRRDPVLLLDEVTAELDGEGKGILFSSLEATGWQVFAATAD 329


>gi|229587581|ref|YP_002869700.1| recombination protein F [Pseudomonas fluorescens SBW25]
 gi|259563668|sp|C3KDU4|RECF_PSEFS RecName: Full=DNA replication and repair protein recF
 gi|229359447|emb|CAY46288.1| DNA replication and repair protein RecF [Pseudomonas fluorescens
           SBW25]
          Length = 367

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 156/347 (44%), Gaps = 14/347 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++++  RN   +      +  I  G NG GKT++LEAI  L   R FR A    V +   
Sbjct: 6   VSVTAVRNLHPVTFSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPVIQYEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +  + F +VE  EG    S+ + +RD      ++I+    R   +L + L +  + P  
Sbjct: 66  LAC-TVFGQVELAEG-GHSSLGI-SRDRGGEFQIRIDGQNARSAAQLAEILPLQLINPDS 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D++  ++ + +
Sbjct: 123 FRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQAAWDRE 182

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +     +I+  R   I AL   + E    E      L+L+ +     ++   A+      
Sbjct: 183 LCLASDEIDEYRRAYIKALKP-VFEQTLSELLDLEGLTLSYYRGWDKERELSAV------ 235

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
            L    + D     T  GP R+DL +      A  I   S G+QK+V+  + +A   L+S
Sbjct: 236 -LATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADIL--SRGQQKLVVCALRIAQGHLVS 292

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
                  I L+D++ + LDE  R AL R++ ++  Q+F+T  D  + 
Sbjct: 293 QARRGQCIYLVDDLPSELDEQHRRALCRLLEELRCQVFITCVDHELL 339


>gi|83588879|ref|YP_428888.1| DNA replication and repair protein RecF [Moorella thermoacetica
           ATCC 39073]
 gi|97180817|sp|Q2RMJ4|RECF_MOOTA RecName: Full=DNA replication and repair protein recF
 gi|83571793|gb|ABC18345.1| DNA replication and repair protein RecF [Moorella thermoacetica
           ATCC 39073]
          Length = 370

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 153/360 (42%), Gaps = 27/360 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FR+Y  L         I  G N  GKTN+LEAI +L+  R FR+     +
Sbjct: 4   LSLQQLQLINFRSYKCLTWDCRPGLNIIFGPNAAGKTNLLEAIGYLALARSFRQQQDQQL 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+ SF     +V G+       I+L     +  + L IN    R++ EL     + +
Sbjct: 64  LTWGASSF-----QVRGLCHSNGEKIELVINYQQHNKRLTINGNRNRLI-ELLGIFPVIY 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSS 181
             P    +  G    RR FLDR +   D  + R + D+ R++  RN LL     G     
Sbjct: 118 FGPDDLHLLKGGPAYRRHFLDREISMGDRLYCRNLQDYRRILFQRNLLLRAIKAGRGKEG 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK----FD 237
                + Q+   G  I   R   + +L+            P +  +      G+      
Sbjct: 178 ELEPWDIQLLATGKAICEKRSCFLQSLA------------PRVAATYRDMAGGEELALIY 225

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +   A +EE+A++L  GR+ +  +  TL GPHR D      D        S G+Q+ +++
Sbjct: 226 RPGVASQEEWAERLKVGREREVQAGMTLWGPHRDDFTFT-LDGHEARYFASQGQQRAIVL 284

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA AR         P+LLLD++ + LDE  + AL  ++     Q F+T T+  +  +
Sbjct: 285 ALKLAEARYYRELLHVMPVLLLDDVFSELDEAHQGALLELLAG-ADQAFLTTTEVGLLPA 343


>gi|315286765|ref|ZP_07872179.1| DNA replication and repair protein RecF [Listeria ivanovii FSL
           F6-596]
 gi|313630894|gb|EFR98586.1| DNA replication and repair protein RecF [Listeria ivanovii FSL
           F6-596]
          Length = 372

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 158/364 (43%), Gaps = 46/364 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEAI  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAILMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       ++ LE    +  +  +IN +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRIVKRGQTVPLELTITQKGKRAKINHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q 
Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNKYLKMLQLKRKVDPILLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA-- 248
           A++ + +   R + I  L                  +    +  +  +    LK EY   
Sbjct: 186 ADVAINLTKRRADFIRKLE-----------------AYAAPIHNQISRGLETLKIEYKAS 228

Query: 249 -------KKLFDG---RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                   K++     +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 VTLTGDDPKVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + I LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  
Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346

Query: 353 SVFD 356
           S  D
Sbjct: 347 SGID 350


>gi|238855509|ref|ZP_04645814.1| DNA replication and repair protein RecF [Lactobacillus jensenii
           269-3]
 gi|282931535|ref|ZP_06337034.1| DNA replication and repair protein RecF [Lactobacillus jensenii
           208-1]
 gi|238831875|gb|EEQ24207.1| DNA replication and repair protein RecF [Lactobacillus jensenii
           269-3]
 gi|281304342|gb|EFA96445.1| DNA replication and repair protein RecF [Lactobacillus jensenii
           208-1]
          Length = 374

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 152/362 (41%), Gaps = 34/362 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  +RN+  L   F     IF+G N  GKTN+LEA+ FL+  R  R  S  ++ R
Sbjct: 3   LKQLKLQNWRNFEELETGFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  +     A + G    + +   L+ R +   +   IN +    +      L      
Sbjct: 63  FGQKA-----AILSGHVVKSQVETDLQVRINAKGKKAWINRIEQSKLSRYVGQLTAILFS 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P    +  G    RRRF+D     I+P +      + ++++ +N  L +       D  +
Sbjct: 118 PEDLALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSKDKVF 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI-------------MEYVQKENFPHIKLSLT 229
              +  Q+A L  +I   R++ +  LS                +E V   + P     +T
Sbjct: 178 LEVLSDQLAGLAAEIISRRLKYLTYLSEYAKKAYAAISNEKEQLEVVYNPSVPLTSEQIT 237

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
              +  + +     K+  A ++  G         TL GPHR DL     DK     + S 
Sbjct: 238 S--ESIYHEVLACFKKNEAGEIRTG--------TTLSGPHRDDLKF-LLDKKDAHLYASQ 286

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q+ + + + LA  +LI   TG  P LLLD++ + LD  +++AL   +    +Q F+T 
Sbjct: 287 GQQRTIALSLKLAEIQLIHQITGEYPALLLDDVMSELDHTRQSALLNYIHG-KTQTFITT 345

Query: 350 TD 351
           TD
Sbjct: 346 TD 347


>gi|296268002|ref|YP_003650634.1| DNA replication and repair protein RecF [Thermobispora bispora DSM
           43833]
 gi|296090789|gb|ADG86741.1| DNA replication and repair protein RecF [Thermobispora bispora DSM
           43833]
          Length = 401

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 166/395 (42%), Gaps = 53/395 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++++FR+YA + L  +   + F+G NG GKTN++EA+ +++     R A+ A + R
Sbjct: 3   VASLSLTDFRSYAGVELELEPGVSAFIGANGQGKTNLVEALGYVATHTSHRVATDAPLVR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+       A V +G   L    I+LE    R+ R      ++ R  D L   LR    
Sbjct: 63  HGAQRAIVRAAVVRDGRRAL----IELEINPGRANRARVNRALMPRPRDALGL-LRTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----------- 174
            P    +  G   ERRR+LD ++ A  PR      D+ER++R RN LL            
Sbjct: 118 APEDIALVKGDPAERRRYLDELLIARAPRFAGVRADYERVLRQRNALLRSAAAARSGRRG 177

Query: 175 ------EGYFDSSWCSSI-------EAQMAELGVKINIARVEMINALSSLI--------- 212
                 E  F +     +       +A +   G ++  AR+E+++AL SL          
Sbjct: 178 ARRAEDEAAFAAIGAGDVLATLDVWDAHLVRHGAELTAARMELVDALRSLTAKAYAALAP 237

Query: 213 ------MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TL 265
                 +EY             TG   G   +   A   E+ +      +   + R  TL
Sbjct: 238 SSGAVDLEYRSAAVDAAAAAPSTGGPGGGDRREAVA---EWLRAALAQARQAELERGVTL 294

Query: 266 IGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
           +GPHR DL++    K +    + S GE     + + LA   L+    G  P+L+LD++ A
Sbjct: 295 VGPHRDDLLLTL--KGMPARGYASHGEAWSFALALRLAAYELL-RADGGDPVLILDDVFA 351

Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LD D+R  L  IV      +        V D L+
Sbjct: 352 ELDHDRRRRLAEIVAPAEQVLITAAVPDDVPDELS 386


>gi|261819373|ref|YP_003257479.1| recombination protein F [Pectobacterium wasabiae WPP163]
 gi|261603386|gb|ACX85872.1| DNA replication and repair protein RecF [Pectobacterium wasabiae
           WPP163]
          Length = 361

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 157/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRVIRHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P F     R++G E    + +    + D  VR   I+      V EL + L I  + P  
Sbjct: 66  PEFV-LHGRIDGTETERSVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +P       + +RL+R RN  L +  ++    +W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHHEPGFLAAWSNMKRLLRQRNAALRQVSHYGQLRAW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R +    ++S I      +  P   LS + F  G   +S      E
Sbjct: 178 DQELVPLAERISEWRAQYSAGIASDIAATC-TQFLPEFSLSFS-FQRGWDKES------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D M   T +GPH++D  +     A+     S G+ K+++  + L     
Sbjct: 230 YAELLERQFERDRMLGYTALGPHKADFRIRASGVAVEDML-SRGQLKLLMCALRLVQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++  + + + D + E  K  
Sbjct: 289 LTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMIGEKGKMF 348

Query: 366 RISN 369
           R+  
Sbjct: 349 RVEQ 352


>gi|119947310|ref|YP_944990.1| DNA replication and repair protein RecF [Psychromonas ingrahamii
           37]
 gi|166220727|sp|A1T0X6|RECF_PSYIN RecName: Full=DNA replication and repair protein recF
 gi|119865914|gb|ABM05391.1| DNA replication and repair protein RecF [Psychromonas ingrahamii
           37]
          Length = 359

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 153/349 (43%), Gaps = 37/349 (10%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I +FRN  S  L F+ +  + VG NG GKT +LEAI FL  GR FR    + V    S S
Sbjct: 8   IHQFRNINSATLDFNPKINVVVGPNGSGKTALLEAIYFLGLGRSFRTHLTSRVVEHESKS 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
            F+ F+ ++   G   I ++   +       L+IN    + +  L ++L +  + P    
Sbjct: 68  -FTLFSEIQNNNGSIPIGLQ---KSKSGETLLKINGSYCKKLANLTQYLPLQLITPEGYT 123

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI----- 186
           + SG    RR FLD  VF  DP         +RL++ RN  L +       C +      
Sbjct: 124 LLSGSPKNRRAFLDWGVFYHDPIFYPNWSRIKRLLKQRNAALKQ-------CKTYNELQI 176

Query: 187 -EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQSFCAL 243
            + ++  L  +I+  R     A   L+M        P +K +L  FL       Q FC  
Sbjct: 177 WDNELCILSEEISQQR----EAYFELLM--------PLVKQTLADFLPDFSITSQFFCGW 224

Query: 244 ---KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGI 299
               +     LFD    D     T  GP ++DL   +    I ++   S G+ K+ +  +
Sbjct: 225 DKNNKSLQDYLFDNFYRDKQIGYTSAGPQKADL--RFKINGIPVSDVLSRGQLKLFVYAL 282

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            LA    +++      + L+D+ S+ LD++K+  L + + +  +QIF++
Sbjct: 283 RLAQGLFLNSFDNKQCVFLIDDFSSELDQNKQQILAKHIINSNAQIFIS 331


>gi|56961786|ref|YP_173508.1| recombination protein F [Bacillus clausii KSM-K16]
 gi|81679102|sp|Q5WM28|RECF_BACSK RecName: Full=DNA replication and repair protein recF
 gi|56908020|dbj|BAD62547.1| DNA replication and repair protein RecF [Bacillus clausii KSM-K16]
          Length = 372

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 157/360 (43%), Gaps = 21/360 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +S +RNY+   +VF  +  +FVG+N  GKTN+LEAI  ++  +  R     ++  
Sbjct: 3   IHTLELSSYRNYSKTAVVFGEKINVFVGENAQGKTNLLEAIYVVALAKSHRTQKDKEMIG 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              P F    A+ E   G  ++ I L  +  +     +IN +  R + +    L +    
Sbjct: 63  FEEP-FARIHAKAEKRTGEVELDIILSAKGKKG----KINGLEQRRLSDYVGTLNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-------TEGYFD 179
           P    +  G    RRRF+D  +  I P +   +  + ++++ RN LL       ++ Y  
Sbjct: 118 PEDLDLVKGSPQVRRRFIDMELGQISPVYLNSLSLYGKILKQRNVLLKNMQQKRSQNY-- 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFD 237
            +    +  Q+ +    +   R E I+ L        Q        + LS    ++    
Sbjct: 176 -AMVDVLTEQLIDKAAFVMKKRAEFISRLEEWATPIHQSISRGKEMLTLSYIPSIEVSDI 234

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVL 296
           ++   +KE+  K     R+ +     TL GPHR D  V +    + + ++GS G+Q+   
Sbjct: 235 ENMSKIKEDLYKAYETKRETEVRRGTTLFGPHRDD--VSFSVNGLDVQSYGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   LI    G  PILLLD++ + LD  +++ L   +     Q F+T T  S  D
Sbjct: 293 LSVKLAEIDLIYAEIGDYPILLLDDVLSELDNYRQSHLLEAI-QARVQTFVTTTSTSGLD 351


>gi|310639475|ref|YP_003944233.1| DNA replication and repair protein recf [Paenibacillus polymyxa
           SC2]
 gi|309244425|gb|ADO53992.1| DNA replication and repair protein recF [Paenibacillus polymyxa
           SC2]
          Length = 371

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 149/347 (42%), Gaps = 16/347 (4%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           + ++RNY  L L       + +G N  GKTN++EAI  L+  +  R +   ++   G+ S
Sbjct: 8   LQQYRNYEQLELNEFGPVNLLIGQNAQGKTNLVEAIFVLALTKSHRTSRDKELISFGATS 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
                A V+   G   + + L T+  ++    +IN +  R + +    L +    P    
Sbjct: 68  THLA-ADVDKKYGKIRLDLSLSTQGKKA----KINGLEQRKLSDFIGSLNVVMFAPEDLE 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI----- 186
           I  G    RRRFLD  +  + P +   +  +++++  RN LL + +        +     
Sbjct: 123 IVKGTPGVRRRFLDMEIGQVAPGYLYHLQQYQKVLVQRNNLLKQAWGKDMASVQLMLEVW 182

Query: 187 EAQMAELGVKINIARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             Q+ E GVKI   R + I  L   +  I E +       +KL+         ++    L
Sbjct: 183 NEQLVEHGVKIVKKRKQFITKLQKWAQAIHEGIAG-GTEELKLTYVPSFGEPEEEDEAVL 241

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +  KL   R+ +     TL GPHR DL      + +   +GS G+Q+   + + LA 
Sbjct: 242 LERFMIKLSQMREQEIRRGMTLAGPHRDDLAFAINGREVH-TYGSQGQQRTTALSLKLAE 300

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
             LI    G  PILLLD++ + LD  ++  L         Q F+T T
Sbjct: 301 IELIHEEIGEYPILLLDDVLSELDPYRQTQLIETFQS-KVQTFITAT 346


>gi|83642920|ref|YP_431355.1| recombinational DNA repair ATPase (RecF pathway) [Hahella
           chejuensis KCTC 2396]
 gi|97180764|sp|Q2SQZ4|RECF_HAHCH RecName: Full=DNA replication and repair protein recF
 gi|83630963|gb|ABC26930.1| Recombinational DNA repair ATPase (RecF pathway) [Hahella
           chejuensis KCTC 2396]
          Length = 375

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 162/355 (45%), Gaps = 23/355 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--YAD 63
           +I F N+   RN +SL+L   A+  +F G+NG GK+++LE +  L  G  FR     YA 
Sbjct: 5   RIAFTNL---RNISSLKLDTSARLLLFHGNNGSGKSSLLEGVYLLGRGASFRTKELDYA- 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           V+ +        F      +      I +  +    +  ++IN    R + EL   L I 
Sbjct: 61  VSHLSDE--MVCFGEAVNEDAGKSFRIGVSRQKTGKLTRVRINGESARTLSELAAALPIL 118

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P      +G   ERRRF+D  VF ++ + +    ++ +L+  RN+LL  G    S  
Sbjct: 119 IVTPDTFGFINGGPGERRRFVDWGVFHVEHQFKVVWQNWRKLLLQRNKLLKSGNISRSEL 178

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFC 241
           S+ + Q      +I+  R      L  +++E +++  E    I   LT  L   + Q+  
Sbjct: 179 SAWDNQYVAYSDEISRYRDAYFAELKEILIESLKESSEQTRDIGDKLTITLSNGWYQNDV 238

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG----STGEQKVVLV 297
              ++ A  +    + D     T +GPHR+D+ V      +   H     S G+QK ++ 
Sbjct: 239 NHMDQLASSV----ESDVKKGFTTLGPHRADIKV-----KVGGVHAKEVLSRGQQKTLIT 289

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            ++L+   ++   T   PI+L+D++ A LD   +  L   + + G+Q+F+T  DK
Sbjct: 290 HLYLSQLEILRRRTNQRPIVLIDDVGAELDTGNQVTLLTRMLEKGAQVFVTVLDK 344


>gi|94985720|ref|YP_605084.1| DNA replication and repair protein RecF [Deinococcus geothermalis
           DSM 11300]
 gi|123257076|sp|Q1IXW9|RECF_DEIGD RecName: Full=DNA replication and repair protein recF
 gi|94556001|gb|ABF45915.1| DNA replication and repair protein RecF [Deinococcus geothermalis
           DSM 11300]
          Length = 358

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 164/372 (44%), Gaps = 33/372 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+   +RN A   L F A  T   G+NG GKTN+LEA      G         DV
Sbjct: 4   VQLSSLSTLNYRNLAPGTLHFPAGVTGVFGENGAGKTNLLEAAYLALTG-------LTDV 56

Query: 65  TRIGS---PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           TR+           + R +  +G   +SI+ E    R  R L+++ V  +  D L +   
Sbjct: 57  TRLEQLIQSGEREAYVRADVQQG-GSLSIQ-EVGLGRGRRHLKVDGVRAKTGD-LPRGSA 113

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           + W+ P    +  G    RR +LD ++  +  R+ +++  +ER +  RN  L  G     
Sbjct: 114 V-WIRPEDSELVFGPPAGRRAYLDALLSRLSARYGQQLARYERTVAQRNAALKAG---ED 169

Query: 182 WCSSI-EAQMAELGVKINIARVEMINALSSLIMEY-VQKENFPHIKLSLTGFLDGKFDQS 239
           W   + +  + +LG  I + R   +  L  L  E   Q  +   + L+L          S
Sbjct: 170 WAMHVWDDALVKLGTDIMLFRRRALTRLDELAREANAQLGSRKPLTLTL----------S 219

Query: 240 FCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                E YA  L   R+ + +SR  T+ GPHR DLI+   +   +  + S GE + V + 
Sbjct: 220 ESTTPETYAHDLA-ARRAEELSRGATVTGPHRDDLILTLGELPAS-EYASRGEGRTVALA 277

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           +  A   L++   G  P+LL+D+ +A LD  +R  L  +   +  Q  +TGT+++   +L
Sbjct: 278 LRCAELELLAEKFGEKPVLLIDDFTAELDPGRRGFLLDLAASV-PQAIVTGTERAPGAAL 336

Query: 359 NETAKFMRISNH 370
              A   R +  
Sbjct: 337 TLRAHAGRFTEE 348


>gi|289523931|ref|ZP_06440785.1| putative DNA replication and repair protein RecF [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502587|gb|EFD23751.1| putative DNA replication and repair protein RecF [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 354

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 162/363 (44%), Gaps = 62/363 (17%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           ++N   +R+ +     + VG N  GKTN LEA+S L      +R    D+    SP    
Sbjct: 11  YKNLKPVRISWHKGLNVVVGPNASGKTNTLEALSMLCGWGQVQRGKLRDLVNWDSPGQAR 70

Query: 75  TFARVEGMEGLADISIKLETRDDR--SVRCLQINDVVIRVVDELNKHLRISWLVPSMD-- 130
            +++  G E   +IS+ +  +D R  SV   Q +   +R+      H      VP +   
Sbjct: 71  LYSQFNGEE---NISVVVSIQDKRTISVAGKQCSASTLRL------H------VPCLSFW 115

Query: 131 ----RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD------- 179
               R+  G    RR FL+ +   I P + RR+ D+ +L+R +N +L  G +D       
Sbjct: 116 SDDVRLIEGSPAIRRNFLNHLCATIVPLYARRLYDYRKLLRHKNYILRAGRYDDAVIKAM 175

Query: 180 ---SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFPHIKLSLTGF 231
              ++W  S    + +L +K+ +  V      SS ++E+     +++ N  + +  L  F
Sbjct: 176 APVAAWLWSYRRSIVDL-LKVGLKEV------SSHLVEFDFEVDIEEGNKDYYEDPLEAF 228

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
               +       KEE A+K+            +L+GPHR DL +    +    A  S G+
Sbjct: 229 ----YKSLAFFKKEEIARKV------------SLVGPHRDDLRITVKGRPAFQAL-SRGQ 271

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           ++ + V   +A A+++      +PI+LLDE++A LD + +  L + + +   Q+     D
Sbjct: 272 RRKLAVAFMMASAKVVEYKLKRSPIILLDEVTAELDREGKEQLIKALFESNWQVITATAD 331

Query: 352 KSV 354
           + +
Sbjct: 332 EQL 334


>gi|16799084|ref|NP_469352.1| recombination protein F [Listeria innocua Clip11262]
 gi|20978613|sp|Q92FU8|RECF_LISIN RecName: Full=DNA replication and repair protein recF
 gi|16412426|emb|CAC95238.1| RecF protein [Listeria innocua Clip11262]
          Length = 370

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 158/364 (43%), Gaps = 46/364 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       ++ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRVVKRGQTVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q 
Sbjct: 126 GAPGVRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPMLLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249
           A++ + +   R + I  L                  +    +  +  +    LK EY A 
Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228

Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
              +G           +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 VTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + + LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  
Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346

Query: 353 SVFD 356
           S  D
Sbjct: 347 SGID 350


>gi|167628098|ref|YP_001678598.1| DNA replication and repair protein RecF [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|259563369|sp|B0U178|RECF_FRAP2 RecName: Full=DNA replication and repair protein recF
 gi|167598099|gb|ABZ88097.1| DNA replication and repair protein RecF [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 349

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 157/361 (43%), Gaps = 21/361 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRN       F       VG NG GKT+ILE+I FLS  R FR +    +    S
Sbjct: 6   LRLQNFRNIPIKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRIINHDS 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F          E +  +S     R   S    ++N  + +   E+ + L I  + P  
Sbjct: 66  DEFIVYTKAYNPDEVVISLS-----RKKNSNNISKLNSEIQKNHTEITRVLPIQLMNPES 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             I +  + +R + LD   F +D    +     + L++ RN  L + Y   ++ + I+ +
Sbjct: 121 FNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLIKQRNSALKQNY-PKAYINGIDKK 179

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           + E    ++  R      L   I E + + N P +KL +  F      +S   + EE   
Sbjct: 180 LCEFADILDYKRQAYFIKLKPKIYEVLSQFN-PDLKLDIDYFRGWNSHKSLVQVLEES-- 236

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
             FD    D+    T  GPH++D+++    K I     S G+QK+++  I LA   + ++
Sbjct: 237 --FDS---DNRYNVTNHGPHKADIVLTINHKPIQDIF-SRGQQKLLICAIKLAQGEIHNS 290

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
                 I L+D+I++ LD      LF  + ++ SQ+F+T T++      N+   F+ + +
Sbjct: 291 ENENKCIYLIDDITSELDNTHTKTLFSYLKNLKSQVFITTTEE------NKIIDFLDLDS 344

Query: 370 H 370
           H
Sbjct: 345 H 345


>gi|260904979|ref|ZP_05913301.1| recombination protein F [Brevibacterium linens BL2]
          Length = 374

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 37/366 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-VT 65
           I  L++  +R+Y  L L F+   T FV DNG GKTNI+EAI +L+  R  R A  A  V 
Sbjct: 3   ISRLSLRNYRSYPELDLEFEPGVTTFVADNGTGKTNIVEAIGYLAHLRSHRVAFDAPLVN 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLE----TRDDRS-VRCLQINDVVIRVVDELNKHL 120
                +  S     +      ++SI+ +     R +RS V+  +I  +V  VV       
Sbjct: 63  ESAQTATVSALVNRDQRHATVEVSIQSKGANRARVNRSPVKMKEILGLVSCVV------- 115

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                 P    +  G   ERR ++D +V + +PR+   + DFER ++ RN LL     D 
Sbjct: 116 ----FAPEDLSLVRGEPAERRSWMDTLVVSRNPRYSSVITDFERALKQRNALLKRLREDR 171

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHI-------KLSLTGF 231
                +EA +    +    +  E++     ++ + V+  ++NF +I       +  +   
Sbjct: 172 D--PGLEATLDIWNMAYADSASELVYGRQRILADIVEPLQKNFAYIAADARLERQGIQAR 229

Query: 232 LDGKFDQSFCALKEEYAKKLF---DGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHG 287
            D + D S      E  + L    + R+   + R  TL GP R DL +   D      + 
Sbjct: 230 YDSRIDYSQAESAAECRELLLAALERRRTTEIERGLTLHGPGRDDLALTIGDHPAK-GYA 288

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFA---PILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
           S GE   + + + LA   L+S+  G A   P+L+LD++ A LD  +RN L   +T+   Q
Sbjct: 289 SHGETWSLALAMQLAGWDLLSSDAGSAAEQPVLVLDDVFAELDTGRRNRLASRITE-AEQ 347

Query: 345 IFMTGT 350
           +F+T  
Sbjct: 348 VFITAA 353


>gi|281356710|ref|ZP_06243201.1| DNA replication and repair protein RecF [Victivallis vadensis ATCC
           BAA-548]
 gi|281316837|gb|EFB00860.1| DNA replication and repair protein RecF [Victivallis vadensis ATCC
           BAA-548]
          Length = 353

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 158/346 (45%), Gaps = 26/346 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L ++ FR+YA+ R  F +   +F G NG GKTN+LE+I FLS  R FR  S  ++ R
Sbjct: 4   IEQLELANFRSYAAGRFRFSSSRVVFTGPNGAGKTNLLESIYFLSILRSFRTVSGRELVR 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           IG    F   ARV+  +G     ++L  +     R   I    IR   E  +  R    V
Sbjct: 64  IGERG-FELKARVD--KGAYHEELRL-AQTLAGKRETWIGANRIRRSSEFIREFRAVVFV 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    I  G S  RRRF D M+  +D  +   + ++ R +  RNR L +    ++  ++ 
Sbjct: 120 PEDRNISGGSSSFRRRFFDMMISTLDGGYLTALNNYYRALSQRNRALKQKE-QAAVAAAF 178

Query: 187 EAQMAELGVKIN---IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFC 241
           E +MA     +N   IAR   I A   LI E V +       L+  G L+ +      + 
Sbjct: 179 EPEMA-----VNAPLIARQRRIYA--KLIEEEVSR------MLAEDGNLEFRIVCRTDYP 225

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIF 300
               EY + L   R  + +   TL GP   +   D+  +  +   +GSTG+ +++ + + 
Sbjct: 226 ENAAEYREMLERNRPKEQLRSCTLSGPQLDEF--DFLLNGKLLRYYGSTGQIRIISLLLK 283

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           LA   L+         +L+D+++  LDE  +   FR ++    Q F
Sbjct: 284 LAEFNLVKRAAKEPVAVLVDDVTGELDELNKARFFRTISGADQQFF 329


>gi|307265435|ref|ZP_07546991.1| DNA replication and repair protein RecF [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919549|gb|EFN49767.1| DNA replication and repair protein RecF [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 362

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 160/354 (45%), Gaps = 21/354 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRN    ++ F     IF G N  GK+N+LE+I  LS GR FR +   ++ +
Sbjct: 3   VKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTELIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G   F   + +    +   D  I+   + + + + +++N   I+   EL   L      
Sbjct: 63  FGEDYF---YVKAIICQENNDKKIEFGYKKNEN-KVIKVNGNKIKSTSELLGQLLTVIFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183
           P    I       RR++LD  +  ++  +   ++ + +++  RN+LL    EG    S  
Sbjct: 119 PEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILINRNKLLKTIKEGK-SRSIL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFDQSF 240
              + Q+ E G KI + R   +  +   I ++   +  E    + L+  G  D   ++  
Sbjct: 178 EIFDDQLVEYGAKIIVVRQSYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEEIV 237

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVG 298
               +E   K  D   +D     T +GPHR D  +I++  D  +   + S G+Q+ V + 
Sbjct: 238 KKRLKEKLLKNID---LDLKYLTTQVGPHREDFKIIINGYDSRV---YSSQGQQRTVALC 291

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + L+   ++   T   PILLLD++ + LDE+++  +   +   G Q F+T T K
Sbjct: 292 LKLSEFEILKKETSEKPILLLDDVMSELDENRKKYILERLQ--GFQTFITHTTK 343


>gi|229816228|ref|ZP_04446538.1| hypothetical protein COLINT_03278 [Collinsella intestinalis DSM
           13280]
 gi|229808236|gb|EEP44028.1| hypothetical protein COLINT_03278 [Collinsella intestinalis DSM
           13280]
          Length = 360

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 171/374 (45%), Gaps = 36/374 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  +R++   ++  D   T+FVG N VGKTN++EA+  L+ G  FR+ + +++ R G 
Sbjct: 8   LSVLHYRSFDDRKIELDPGITVFVGRNAVGKTNLVEALQLLTAGASFRKPTASELLRDGE 67

Query: 70  PSFFSTFARVEGMEGLADISIKLE------TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            S       +EG   L ++ +         TR+ +  R   I  V+  V+          
Sbjct: 68  GSGRIRLM-LEGEGRLIEMGLDFSEGKRSFTRNGKKARAAGIRGVLPSVL---------- 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    +    +  RR  LD     ++  + + +  +ER +  RN LL +GY      
Sbjct: 117 -FCPDHLDMVKRSASRRREALDSFGVQLNENYAKLLAAYERTVEQRNNLLRDGYA-PGLL 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              +  +A  G ++ + R  ++  +    +E V +   PH +       D ++  SF  L
Sbjct: 175 EVWDESLATTGAQLLLHRTALLERIREHFIE-VYRAIAPHEE------PDVRYVPSFGEL 227

Query: 244 ---KEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
              +E  A +  D    R+ D + R  TL+GPHR +++    D       GS G+Q+ ++
Sbjct: 228 AGGREAIAAQFLDALAQRREDELRRGCTLVGPHRDEVLF-TIDGRSARDFGSQGQQRSIV 286

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF- 355
           +   +A  ++  +  G  P+LLLD++ + LD  +R+A+   + D   Q  +T T+   F 
Sbjct: 287 LAWKIAEVQVTRDILGRYPLLLLDDVMSELDAARRDAIVGFIAD-EIQTVITTTNLGYFA 345

Query: 356 DSLNETAKFMRISN 369
           D +   A+ +RI +
Sbjct: 346 DDMLARARVIRIGD 359


>gi|300721092|ref|YP_003710360.1| gap repair protein [Xenorhabdus nematophila ATCC 19061]
 gi|297627577|emb|CBJ88096.1| gap repair protein with nucleoside triP hydrolase domain, part of
           RecFOR complex that targets RecA to ssDNA-dsDNA junction
           [Xenorhabdus nematophila ATCC 19061]
          Length = 363

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 162/364 (44%), Gaps = 19/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN A+  L         VG NG GKT+ILEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIANADLPLATGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSIQAGRVIRHDC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     R++       +S+ L +++ +    ++I+      + EL K L +  + P  
Sbjct: 66  EEFI-LHGRLDQQFHERSLSVGL-SKNRQGGSQVRIDGSDGHKIAELAKMLPMQLITPEG 123

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR F+D   F  +PR      + +RL++ RN   R +T       W    
Sbjct: 124 FTLLNGGPKYRRAFIDWGCFHNEPRFFMAWGNLKRLLKQRNAALRQVTRYNQIQHW---- 179

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++A L  +I+  R E I  +S  I E   K+  P   LS++      F Q +   + E
Sbjct: 180 DRELAPLATEISQWRAEYIAGISEDI-ERTCKQFLPEFTLSIS------FQQGWDK-ESE 231

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D        S G+ K+++  + LA    
Sbjct: 232 YAELLARQFERDRSLTYTASGPHKADLRI-RADGTPVEDMLSRGQLKLLMCALRLAQGEY 290

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
            +  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  T   V D ++  ++  
Sbjct: 291 FTRQSGQKCLYLLDDFASELDAGRRQLLAERLKSTQAQVFVSAITSGQVTDMIDVNSRMF 350

Query: 366 RISN 369
           R+ +
Sbjct: 351 RVED 354


>gi|149919819|ref|ZP_01908296.1| DNA replication and repair protein RecF [Plesiocystis pacifica
           SIR-1]
 gi|149819426|gb|EDM78857.1| DNA replication and repair protein RecF [Plesiocystis pacifica
           SIR-1]
          Length = 406

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 162/385 (42%), Gaps = 45/385 (11%)

Query: 5   IKIKFLNISEFRNY---------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
           ++++ L +++FRN+           + L F  + T+  G NG GKTN+LEA+   S  R 
Sbjct: 1   MELRRLTLADFRNFRGATPEQPGPGVELAFGERFTVLWGHNGAGKTNVLEALYLCSTLRS 60

Query: 56  FRRASYADVTRIGSPSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCL----QINDV 108
           FR      + R G        ARVE +E   D   +   LE R DR  R      +++  
Sbjct: 61  FRTTDAKALLRRG-----QDHARVE-LEAFDDDLGLDTCLEVRIDRGARSTRRSARVDGK 114

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           ++R   +    ++     P    I  G    RR+FLDR++FA    H   +  +E+L+R 
Sbjct: 115 LVRSATDFYGRVQAVLFTPEDLGILRGSPGGRRQFLDRVLFARQRAHIADVQRYEKLLRS 174

Query: 169 RNRLLTEGYFD------SSWCSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKE 219
           RNR+L     +      +    + +  +AE+G +I   R  ++  L    +    ++   
Sbjct: 175 RNRVLKTDPAELPRAERTRMLDTYDHGLAEVGAQIWDRRQGLVEDLREPFAAAFAHIHDR 234

Query: 220 NFPHIKLSLTGFLDG-------KFDQSFCAL------KEEYAKKLFDGRKMDSMSRRTLI 266
             P    +              +  Q   A+      ++  A+ L D R+ D  + RT +
Sbjct: 235 RDPGEGGAALAAGLAYGARVLTRESQPATAVEDLPGRQQALAQALRDTRRRDEAAGRTTV 294

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
           GPH  DL V   D        S G+ + +++   +A  R      G  P LLLD++S+ L
Sbjct: 295 GPHLDDLHV-RLDGVEAGDFASQGQARALVLAFKIAELRDAQQRHGRRPTLLLDDVSSEL 353

Query: 327 DEDKRNALFRIVTDIGSQIFMTGTD 351
           D  +   LF  +     Q  +T TD
Sbjct: 354 DPRRSARLFETLAQEVGQCVLTTTD 378


>gi|320449208|ref|YP_004201304.1| RecF protein [Thermus scotoductus SA-01]
 gi|320149377|gb|ADW20755.1| RecF protein [Thermus scotoductus SA-01]
          Length = 340

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 151/324 (46%), Gaps = 28/324 (8%)

Query: 16  RNYASLRL-VFDAQHTIF--VGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
           RN+ +L L  F     +F  VG N  GKT++L  I  L+ G G  RAS AD+ R G    
Sbjct: 9   RNFRNLALSAFQPPQGLFALVGGNAQGKTSLLLGI-HLALG-GEVRASLADLIRFGEEEA 66

Query: 73  FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
           +   A VE   GL  I  +L   + R +  L    V +R + EL   + +   +P    +
Sbjct: 67  WLQ-AEVETELGLYRIEQRLRP-EGREI-VLNEKAVSLRALHELPGSVLV---LPEDVEV 120

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
             G   ERR FLDR++     R+   +  +E+ +R RN LL  G    +     + ++A 
Sbjct: 121 VLGSREERRTFLDRLIGRFSRRYTALLSAYEKALRQRNALLKAG---GNGLEVWDQELAR 177

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
            G +I +A           I + V +   P    L +     G+F ++  A +EE   +L
Sbjct: 178 YGAEI-MAFRRRFLRRFLPIFQSVHRSLAPGEAGLLVEETAQGEFLEALRARREE---EL 233

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
             G+        TL+GPHR DL+     + +    GS GE K V + + LA  RL+S   
Sbjct: 234 LKGQ--------TLVGPHRDDLVFLLSGRPVH-RFGSRGEAKGVALALRLAEHRLLSEHH 284

Query: 312 GFAPILLLDEISAHLDEDKRNALF 335
           G AP+LL+DE S  LDE KR A+ 
Sbjct: 285 GEAPLLLVDEWSEELDEGKRQAVL 308


>gi|266620981|ref|ZP_06113916.1| DNA replication and repair protein RecF [Clostridium hathewayi DSM
           13479]
 gi|288867362|gb|EFC99660.1| DNA replication and repair protein RecF [Clostridium hathewayi DSM
           13479]
          Length = 361

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 150/352 (42%), Gaps = 28/352 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  +RNY  L + F     I  GDN  GKTNILEAI   +  +  R +   ++ +
Sbjct: 3   IESIELKNYRNYDKLHMDFSHGTNILYGDNAQGKTNILEAIYVCATTKSHRGSKDKEIIQ 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                S      R   +    D+ +K         + + +N V I+   EL   + + + 
Sbjct: 63  FDRDESHIKLNVRKRDVPYRIDMHLK-----KNRAKGVAVNGVPIKKASELFGIVNVVFF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    +      ERRRF+D  +  ++  +   ++ + +++  RN+LL +  F   +  +
Sbjct: 118 SPEDLNLIKNGPAERRRFIDLELCQLNKLYVHSLVQYNKIITQRNKLLKDIMFRPDYEET 177

Query: 186 IE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           ++    Q+ + G ++   R   ++ L+ LI          H +LS      G+ +     
Sbjct: 178 LDIWDMQLVQYGREVIRCREAFVSQLNDLIGTI-------HRQLS------GEKESLHIC 224

Query: 243 LKEEYAKKLFD-----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +      +F+      R  D   R TL GPHR DL     D  I    GS G+Q+   +
Sbjct: 225 YEPNVTADMFEDTLRKSRPSDLKQRTTLTGPHRDDLSFIINDIDIR-RFGSQGQQRTAAL 283

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
            + LA   L+       PILLLD++ + LD  ++N L   +  I + I  TG
Sbjct: 284 SLKLAEIELVKKIVNDYPILLLDDVLSELDGSRQNHLLSGINHIQTMITCTG 335


>gi|308066842|ref|YP_003868447.1| DNA repair protein RecF [Paenibacillus polymyxa E681]
 gi|305856121|gb|ADM67909.1| DNA replication and repair protein RecF [Paenibacillus polymyxa
           E681]
          Length = 371

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 149/347 (42%), Gaps = 16/347 (4%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           + ++RNY  L L       + +G N  GKTN++EAI  L+  +  R +   ++   G+ S
Sbjct: 8   LQQYRNYEQLELNEFGPVNLLIGQNAQGKTNLVEAIFVLALTKSHRTSRDKELISFGATS 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
                A V+   G   + + L T+  ++    +IN +  R + +    L +    P    
Sbjct: 68  THLA-ADVDKKYGKIRLDLALSTQGKKA----KINGLEQRKLSDFIGSLNVVMFAPEDLE 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI----- 186
           I  G    RRRFLD  +  + P +   +  +++++  RN LL + +        +     
Sbjct: 123 IVKGTPGVRRRFLDMEIGQVAPGYLYHLQQYQKVLVQRNNLLKQAWGKDMASVQLMLEVW 182

Query: 187 EAQMAELGVKINIARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             Q+ E GVKI   R + I  L   +  I E +       +KL+         ++    L
Sbjct: 183 NEQLVEHGVKIVKKRKQFITKLQKWAQAIHEGIAG-GTEELKLTYVPSFSEPEEEDEAVL 241

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +  KL   R+ +     TL GPHR DL      + +   +GS G+Q+   + + LA 
Sbjct: 242 LERFMIKLSQMREQEIRRGMTLAGPHRDDLAFAINGREVH-TYGSQGQQRTTALSLKLAE 300

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
             LI    G  P+LLLD++ + LD  ++  L         Q F+T T
Sbjct: 301 IELIHEEIGEYPVLLLDDVLSELDPYRQTQLIETFQS-KVQTFITAT 346


>gi|146329283|ref|YP_001209128.1| DNA replication and repair protein RecF [Dichelobacter nodosus
           VCS1703A]
 gi|146232753|gb|ABQ13731.1| DNA replication and repair protein RecF [Dichelobacter nodosus
           VCS1703A]
          Length = 356

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 159/353 (45%), Gaps = 20/353 (5%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++I  L    FR+  S   L F  +  I  G  G GKT +LEA+  L  G+ FR A    
Sbjct: 1   MRIDSLQTQHFRHLKSAAALAFHPKLNIISGKTGSGKTALLEALYCLGRGKSFRTAQVRH 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +      S+F   A +   +G   + ++   R  R    ++++   +  +  L   L + 
Sbjct: 61  MIAY-QQSYFRLIAELSDQDGNYFLGMERRARGYR----VRLDGQTLNGLSALAALLPVH 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            +      + +    ERRRFLD  +F  D         ++  ++GRNR L EG+ D  + 
Sbjct: 116 IVYADHFSLLTAAPQERRRFLDYGLFFDDAAFLPLWQRYQYALKGRNRALMEGWQDH-YI 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            S    +AE   KI+I R + +  L + + +Y       H  L     L  ++D+ +   
Sbjct: 175 RSWHPLLAETAEKIDILRRDYLKRLENRLNQY-------HAHLGGLQTLRIRYDRGWHG- 226

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLA 302
             +  + L +    D   + T  G HR+D  + +C+    IAH  S G+QK VL  + L+
Sbjct: 227 --DLRQTLDENLARDQQIKYTRDGIHRADWRL-FCED-YDIAHTFSRGQQKTVLCALILS 282

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            A  I   +   P++L+D+I+A LD +++  L R +    +Q+F+T  +  + 
Sbjct: 283 QADEIRARSKKVPVILVDDITAELDIERQQLLLRFLQASEAQLFITALEAKLL 335


>gi|331007623|ref|ZP_08330765.1| DNA recombination and repair protein RecF [gamma proteobacterium
           IMCC1989]
 gi|330418563|gb|EGG93087.1| DNA recombination and repair protein RecF [gamma proteobacterium
           IMCC1989]
          Length = 378

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 164/360 (45%), Gaps = 18/360 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+I   RN   + +    +  IF GDNG GKT+ILEA++ +  GR FR      +  
Sbjct: 4   LKTLSIQHLRNLNEVSIELSHKINIFYGDNGSGKTSILEAVALVGLGRSFRSHKTRSLVN 63

Query: 67  IGSPSFFSTFARVEGME---GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               +  + F  ++  +   G A I + ++ +       ++++   IR    L K L + 
Sbjct: 64  -HQQTQLTVFTHLDVSDIDVGSASIPVGVQ-KSRNGTGAIRVSGETIRSAAILAKQLPLL 121

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            +     ++  G  ++RR+FLD +VF + P         ++ ++ RN LL       S  
Sbjct: 122 IINAGSFQLIEGSPVQRRQFLDWLVFHVKPEFAELWRALQKALKQRNSLLRRDKITRSDI 181

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-CA 242
              + ++  L   I+  R E+  +L S      Q+     + + +  +     D S   A
Sbjct: 182 KPWDHELVRLSQVIDSFRSEVFLSLISCFERCGQEFAVDQLNIDMEYYRGWDKDLSIEAA 241

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVGIFL 301
           L+ ++ +   DG         T  GP R+D+ +    K A+ +   S G++K ++  + +
Sbjct: 242 LENDFERDCRDG--------YTHQGPQRADIKIKSKSKPAVDVL--SRGQEKSLICALTI 291

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNE 360
           A A L   +T    + L+D+++A LD+     L + +T++ +Q+ +TG +K  +F   N+
Sbjct: 292 AQAHLYQQSTSGNCVFLIDDLAAELDKQHIETLTKWLTELNAQVLVTGVNKEELFSPWNK 351


>gi|166362989|ref|YP_001655262.1| recombination protein F [Microcystis aeruginosa NIES-843]
 gi|189039629|sp|B0JM53|RECF_MICAN RecName: Full=DNA replication and repair protein recF
 gi|166085362|dbj|BAG00070.1| DNA replication and repair protein [Microcystis aeruginosa
           NIES-843]
          Length = 375

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 182/370 (49%), Gaps = 34/370 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNYA   L F+++ TI +G+N  GK+N+LEAI  L+  +  R +   D+  
Sbjct: 3   LEHLHLHSFRNYAEQVLKFESKKTILLGNNAQGKSNLLEAIELLATLKSHRVSKDRDLV- 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           + S S    FARV  + G +++S+ L +   R+         VIR    L +HL    ++
Sbjct: 62  LESDSEARIFARVNRLYGASELSLILRSSGRRT---------VIRDRQPLRRHLDFLGVI 112

Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175
            ++   FS L ++        RR +LD ++  ++P +   +  + +++R RN LL E   
Sbjct: 113 NAVQ--FSSLDLDLVRGGPEARRDWLDTLLIQLEPLYVHILQQYNQVLRQRNALLKEIRK 170

Query: 176 ------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
                  Y D S     + Q+AE G ++   R  ++  L  L  ++ +  +     L L 
Sbjct: 171 QELEGKVYGDLSQLKLWDLQLAETGSRVTRRRARVLQRLIPLAQKWHESISGKTELLELQ 230

Query: 230 GFLDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHG 287
              +  + +     ++  +  K+   R  +     +++GPHR +  VD+  ++    ++G
Sbjct: 231 YIPNVPWVEDDVNGVQRAFLDKIETRRLAEKQLGTSVVGPHRDE--VDFLINQNPAKSYG 288

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+Q+ +++ + LA  +L+    G  P+LLLD++ A LD +++N L   + D   Q  +
Sbjct: 289 SQGQQRTLVLALKLAELQLLEQIIGEPPLLLLDDVLAELDIERQNQLLDAIED-RFQTLI 347

Query: 348 TGTDKSVFDS 357
           T T  S F+S
Sbjct: 348 TTTHLSSFES 357


>gi|220910787|ref|YP_002486096.1| recombination protein F [Arthrobacter chlorophenolicus A6]
 gi|254790459|sp|B8H7D1|RECF_ARTCA RecName: Full=DNA replication and repair protein recF
 gi|219857665|gb|ACL38007.1| DNA replication and repair protein RecF [Arthrobacter
           chlorophenolicus A6]
          Length = 402

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 171/389 (43%), Gaps = 41/389 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++++FR+YA + LV     T+ VG NG+GKTN++EAI +L+     R +S   + R
Sbjct: 3   LEHLSLTDFRSYAQVDLVLSPGVTVLVGYNGIGKTNLMEAIGYLATLSSHRVSSDGPLLR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+        R   +       ++LE    R+ R        +R  D L    +     
Sbjct: 63  FGTE---RALVRARLVRNGQTTVLELEINAGRANRGRINRSNPVRARDLLGI-CQTVLFA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183
           P    +  G    RRRFLD ++ ++ P H     D++R+++ RN LL     G   ++  
Sbjct: 119 PEDLALVKGDPSNRRRFLDELLASLVPHHAATRSDYDRVLKQRNALLKSARAGRVTAAHE 178

Query: 184 SSIEA---QMAELGVKINIARVEMINAL-SSLIMEYVQ-----KENFPHIKLSLTGFLD- 233
           ++++     MA+ G ++  AR+E++  L   L   Y +     K      + +L   +D 
Sbjct: 179 ATLDVWDQHMAKAGAELLHARLELVELLRPHLARAYAELTDASKPADAIYRSTLQNQMDD 238

Query: 234 -----------GKFDQ---------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
                      G  D          S   L + Y +   + RK +     +L+GPHR DL
Sbjct: 239 DGASLGATGRPGPGDAAAAEDLRGLSIEELTQRYVRAFGESRKKELERGISLVGPHRDDL 298

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLDEDK 330
            +    +A    + S GE   + + + LA   ++   + T G APIL+LD++ A LD  +
Sbjct: 299 EL-VLGQAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGSAPILILDDVFAELDVQR 357

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
           R  L  IV+     +     D  + + L+
Sbjct: 358 RRKLAAIVSGAEQVLVTAAVDADIPEELS 386


>gi|251787655|ref|YP_003002376.1| recombination protein F [Dickeya zeae Ech1591]
 gi|247536276|gb|ACT04897.1| DNA replication and repair protein RecF [Dickeya zeae Ech1591]
          Length = 361

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 158/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR    A V R   
Sbjct: 6   LLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     R+EG E    + +      D +VR   I+      V EL + L I  + P  
Sbjct: 66  AEFI-LHGRIEGQERERSVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +P       + +RL+R RN  L +  ++    +W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFSAWSNLKRLLRQRNAALRQVSHYGQLRAW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L   I+  R E  +A+++ I      +  P   LS + F  G   +S      +
Sbjct: 178 DRELVPLAEGISRWRAEYSSAIAADIGSTC-AQFLPEFSLSFS-FQRGWDKES------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T +GPH++D  +     A+     S G+ K+++  + LA    
Sbjct: 230 YAELLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++  T + + D + E  K  
Sbjct: 289 LTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGKMF 348

Query: 366 RISN 369
           R+  
Sbjct: 349 RVEQ 352


>gi|304385858|ref|ZP_07368202.1| recombination protein F [Pediococcus acidilactici DSM 20284]
 gi|304328362|gb|EFL95584.1| recombination protein F [Pediococcus acidilactici DSM 20284]
          Length = 374

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 158/358 (44%), Gaps = 23/358 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRNYA L + F +   + +G+N  GKTN+LE+I FL+  R  R ++  D+  
Sbjct: 3   LKTLELHNFRNYADLSVEFGSGINVLLGENAQGKTNLLESIYFLALTRSHRTSNDRDL-- 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           IG   + +  ARV G          +E       +  ++N +    + +    L +    
Sbjct: 61  IG---WKAKEARVLGTIQKEHTQTPVEIDISSKGKNAKVNHIEQGRLSQYVGQLNVILFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS----W 182
           P    I  G    RRRF+D     +  ++      +  +++ RN+ L +   D      +
Sbjct: 118 PEDLSIVKGSPAVRRRFIDMEFGQMSSKYLYNSAQYRSVLKQRNQYLKQLQIDPKGDQVY 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLDGK 235
              +  Q+A  G +I   R++ +  L          I + ++K  F ++   L       
Sbjct: 178 LDVLSDQLAAYGAEIIFQRIQFLKKLEEWSQAVHEEISQGLEKLTFQYVS-PLKKDETTS 236

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            +  + AL+E   K     R+ +    +TL+GPH  D+      K ++   GS G+Q+  
Sbjct: 237 TETIYTALQELLKKH----RQRELQQGKTLVGPHLDDVKFIVNGKNVS-TFGSQGQQRTT 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            + + LA   L+   TG  P+LLLD++ + LD+ ++  L   + +   Q F+T T  S
Sbjct: 292 ALSVKLAEIDLMKEETGEYPVLLLDDVLSELDDSRQTHLLTAIQN-KVQTFITTTSLS 348


>gi|62185059|ref|YP_219844.1| recombination protein F [Chlamydophila abortus S26/3]
 gi|81312775|sp|Q5L648|RECF_CHLAB RecName: Full=DNA replication and repair protein recF
 gi|62148126|emb|CAH63883.1| DNA replication and repair protein [Chlamydophila abortus S26/3]
          Length = 367

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 155/353 (43%), Gaps = 33/353 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRNY    +          G+N  GKTN++EA+  LS GR FR +   +    GS
Sbjct: 6   LRLKNFRNYKEAEVSLSPNINYIFGENAQGKTNLIEALYVLSLGRSFRTSHLTEAIFFGS 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
             FF   TF +    +G+      L T  D+  + +  +   I+ + +L   + I  L  
Sbjct: 66  SYFFLEMTFEK----DGVPHT---LSTYVDKHGKKIFCDQSPIKTLSQLIGMIPIV-LFS 117

Query: 128 SMDR-IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           + DR + +G   +RR FL+ ++   DP+++  +  + R +  RN LL      +S  S  
Sbjct: 118 AKDRCLIAGAPSDRRLFLNLLLSQCDPQYKHSLSYYHRALLQRNTLLKTK--QTSTLSVW 175

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF---CAL 243
           + Q+A LG  + ++R      L+ LI              SL+  L  KF  S    C +
Sbjct: 176 DEQLATLGSYLCLSRYTCCAQLNQLIQTLWNN--------SLSERLFIKFKSSLIKQCKI 227

Query: 244 KEEYAKKLFDGRKMDSMSR-----RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            +E  K     +   S+ R      T +GPHR D  +   D  + +A  S+  QK  L+ 
Sbjct: 228 SQEAVKNELHKQLTASLHRDLELGNTSVGPHREDFTLMIND--LPVAQFSSEGQKHSLLA 285

Query: 299 IF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +  LA +  I +     P+  +D+I A LD  + + L  +   +G Q  +T T
Sbjct: 286 VLKLAESLYIKSLHNVYPLFCMDDIHAGLDNQRISQLLGLAPSLG-QTLITST 337


>gi|311745376|ref|ZP_07719161.1| RecF protein [Algoriphagus sp. PR1]
 gi|126577921|gb|EAZ82141.1| RecF protein [Algoriphagus sp. PR1]
          Length = 366

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 170/355 (47%), Gaps = 30/355 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++ +F+N+   +LVF  Q    VG NG GKTNIL+ I +LS  +   ++S + +
Sbjct: 1   MHLKSLDLLQFKNHEKTQLVFSPQINCIVGLNGSGKTNILDGIHYLSLTKSAVQSSDS-L 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             +    FF+     E      ++   +E    + +   Q      + +D+ ++H+ +  
Sbjct: 60  NVLHDKDFFAIKGHFEIESKPLEVRCTVELGKKKQI--FQNG----KALDKTSEHVGLLP 113

Query: 125 LV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GY 177
           LV   P    +  G S  RR+F D ++  +D  +  ++I +   ++ RN LL +    G 
Sbjct: 114 LVLIAPDDTDLIRGGSDGRRKFFDGLLSQLDRNYLNQLIRYHHFLKQRNALLKKFAETGR 173

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            D +   S + +M  L   I   R E++  ++ ++  +    +    K+++    +    
Sbjct: 174 RDLTLLGSYDEEMIILSKAIATRRAELLEEVAPMLQSHYAAISQGQEKVTIVYETE---- 229

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD---LIVDYCDKAITIAHGSTGEQKV 294
               AL+E+++      RK D +++ +  G H+ D   LI D+  + I    GS G+QK 
Sbjct: 230 ----ALREDFSNYFSSLRKKDFITKNSNAGIHKDDYSFLIGDHPIRKI----GSQGQQKS 281

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMT 348
            ++ + LA  ++  N  G  P+LLLD+I   LD+ +   + ++++     QIF+T
Sbjct: 282 FIISLKLAQFQIFENAKGEKPLLLLDDIFDKLDDTRIAQMMQLISQHTFGQIFLT 336


>gi|258622960|ref|ZP_05717975.1| recF protein [Vibrio mimicus VM573]
 gi|258626084|ref|ZP_05720935.1| recF protein [Vibrio mimicus VM603]
 gi|262166786|ref|ZP_06034523.1| DNA recombination and repair protein RecF [Vibrio mimicus VM223]
 gi|262172780|ref|ZP_06040458.1| DNA recombination and repair protein RecF [Vibrio mimicus MB-451]
 gi|258581610|gb|EEW06508.1| recF protein [Vibrio mimicus VM603]
 gi|258584743|gb|EEW09477.1| recF protein [Vibrio mimicus VM573]
 gi|261893856|gb|EEY39842.1| DNA recombination and repair protein RecF [Vibrio mimicus MB-451]
 gi|262026502|gb|EEY45170.1| DNA recombination and repair protein RecF [Vibrio mimicus VM223]
          Length = 363

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 170/366 (46%), Gaps = 20/366 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +   
Sbjct: 6   LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65

Query: 70  PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           P  F    R+      +D   + + +  + D S   ++I     + + +L + L +  + 
Sbjct: 66  PELF-VHGRICEHSLTSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184
           P    + +    +RR F+D  VF  +P        F+RL + RN LL   + Y + S+  
Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFYDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I+  R   +N L S + E + +   P   + L  +   + DQ + ++ 
Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKS-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  ++       D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++K
Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351

Query: 364 FMRISN 369
              +++
Sbjct: 352 TFHVAH 357


>gi|313900878|ref|ZP_07834368.1| DNA replication and repair protein RecF [Clostridium sp. HGF2]
 gi|312954298|gb|EFR35976.1| DNA replication and repair protein RecF [Clostridium sp. HGF2]
          Length = 366

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 159/347 (45%), Gaps = 7/347 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  FRNYA + + F     I  G N  GKTN+LE+I +LS  R  R +   D+
Sbjct: 1   MRLESLRLHNFRNYADVNVSFTDGIHILTGKNAQGKTNLLESILYLSTTRSHRTSEDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +FF   A +   +   +I +   T +++        + V RV D + +   + +
Sbjct: 61  IKEGEQAFFIK-ALIAKEQKTEEIRV---TVNEKGKNLFIYQNPVNRVSDFIGEFNSVMF 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
               M+ +F      RRRF+D  +  I  ++   +    RL++ RN  L +   D S+  
Sbjct: 117 CPDDMN-LFQASPRVRRRFVDMELSKISKKYVSTLYVATRLLKERNAYLKQERVDRSYLE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            + +Q+ +  V I   R   +  L      + ++ +     +++       F  S  ALK
Sbjct: 176 VLTSQLVDASVVIMKQRHFFLEELLDKCRTFYRQLSNDDTDITVRYLSCVPFSDSEEALK 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E   KK    +  D + ++T  G H+ D I +     + ++  S G+++ VL+ + +   
Sbjct: 236 EALLKKYQKHQDRDLLLKQTTAGIHKEDFIFEMNGHEL-VSFASQGQKRSVLLALKIGMI 294

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            +I       P+LLLD++ + LD  ++  L + +     QIF++ TD
Sbjct: 295 HMIHEIIQEYPVLLLDDVFSELDSYRKQELLKSLPK-EVQIFISTTD 340


>gi|229491171|ref|ZP_04384999.1| DNA replication and repair protein RecF [Rhodococcus erythropolis
           SK121]
 gi|229321909|gb|EEN87702.1| DNA replication and repair protein RecF [Rhodococcus erythropolis
           SK121]
          Length = 409

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 173/385 (44%), Gaps = 34/385 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++  ++ +FR++ SL L      T+F+G NG GKTN+LE++ +LS     R ++ A + R
Sbjct: 3   VRRFSLRDFRSWDSLTLDLTPGTTVFLGSNGHGKTNVLESLGYLSTLSSHRVSADAPMIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            GS S F+    V       +++I +E  + +S R  +IN    R   E+   L+     
Sbjct: 63  SGSASAFAGATVVNNGR---ELTIDVELIEGKSNRA-RINQSPTRRPREVLGILQSVMFA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----------TEG 176
           P    +  G   +RRR+LD ++ +  PR      D+++++R R+ LL          + G
Sbjct: 119 PEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDKVLRQRSALLKTAGAALRRGSRG 178

Query: 177 YFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIME---YVQKENFP---HIKLS 227
               +  S++E     +A  G ++   R+E+++ L+  + E    +  E+ P     K S
Sbjct: 179 GESDNVLSTLEVWDGHLAAHGAQLLAGRLELVHDLAPHLAESYRSIAPESRPASIRYKSS 238

Query: 228 LTGFLDGKFDQS--------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           L   LD +F              L+E +  +L   R  +      L+GPHR DL +   D
Sbjct: 239 LGSSLDPEFTDPARISGIDDVAYLEERFHHELAQMRSKEIDRGVCLVGPHRDDLELILGD 298

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
                   S GE     + + LA   L+    G  P+L+LD++ A LD  +R AL  +  
Sbjct: 299 SPAK-GFASHGESWSFALSLRLAGFALL-RADGSDPVLMLDDVFAELDRRRRRALATVAA 356

Query: 340 DIGSQIFMTGTDKSVFDSLNETAKF 364
                +      + V D L E AKF
Sbjct: 357 TAEQVLITAAVPEDVPDEL-EAAKF 380


>gi|225386350|ref|ZP_03756114.1| hypothetical protein CLOSTASPAR_00094 [Clostridium asparagiforme
           DSM 15981]
 gi|225047532|gb|EEG57778.1| hypothetical protein CLOSTASPAR_00094 [Clostridium asparagiforme
           DSM 15981]
          Length = 361

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 151/357 (42%), Gaps = 28/357 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  +RNY  L +  +    I  GDN  GKTNILEA+      +  + A   D+ R
Sbjct: 3   IESIELKNYRNYEELHMELNEGTNILYGDNAQGKTNILEAVYVCCTSKSHKNAKDRDIIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                S      R   +    D+ +K         + + IN + IR   EL     +   
Sbjct: 63  FDQDESHIKMQIRKNDVPYRIDMHLK-----KNKPKGIAINGMPIRRASELFGIANVVCF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    I      ERRRF+D  +  ++  +   ++ + +++  RN+LL E  F   +  +
Sbjct: 118 SPEDLNIIKNGPSERRRFIDMELCQLNKLYVHSLVQYNKVLVQRNKLLKELAFRPDYGET 177

Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           ++    Q+   G ++   R + +  L+ +I           I   L+G    K D   C 
Sbjct: 178 LDVWDMQLVNYGKEVMEYRGDFVCRLNEMIH---------GIHARLSG---QKEDLKICY 225

Query: 243 LKE----EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLV 297
             +    ++ + L   R  D   + TL GPHR D  + +    I I   GS G+Q+   +
Sbjct: 226 EPDTDAAQFEEALKRSRPQDMKQKTTLCGPHRDD--ISFFVNGIDIRKFGSQGQQRTAAL 283

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            + L+   L+       PILLLD++ + LD  ++N L   + DI + I  TG D  V
Sbjct: 284 SLKLSELELVKQLIHDRPILLLDDVLSELDAGRQNHLLNAINDIQTIITCTGLDDFV 340


>gi|332996042|gb|EGK15669.1| DNA replication and repair protein recF [Shigella flexneri VA-6]
          Length = 357

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 161/364 (44%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +PR      + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPRFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++  M+   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAA-DMDDTCKQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|145297127|ref|YP_001139968.1| DNA replication and repair protein RecF [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142849899|gb|ABO88220.1| DNA replication and repair protein RecF [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 367

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 155/345 (44%), Gaps = 20/345 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +S+FRN     L       I VG NG GKT++LEAI +L  GR FR      V R G 
Sbjct: 6   LQLSDFRNIQQASLKLSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRVIRQGE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            + F+ FA+ E +EG   + I L  +D      L+I     + + +L + L +  + P  
Sbjct: 66  RA-FTLFAQCE-LEG-RQVPIGL-AKDKSGETQLKIAGAQAQRLADLAELLPVQLIHPDG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR +LD  VF  +P          RL++ RN LL +        +  + +
Sbjct: 122 FNLLTGGPQARRAWLDWGVFHQEPTFFSLWGRVRRLLKQRNALLRQST-QYRQLAFWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  LG ++   R     A++ LI E +  +  P   +SL  +   + D     L E    
Sbjct: 181 LVRLGGELAEFRASYCQAITPLIKE-MTADFLPEFDISLGFYRGWEKDTPLGDLLEA--- 236

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG---STGEQKVVLVGIFLAHARL 306
               G + D     T +GP ++D+ +    KA  +      S G+ K+++  + LA    
Sbjct: 237 ----GFERDRTLGYTGVGPQKADVRL----KANGVPAQDILSRGQLKLLVCAMRLAQGLY 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           ++  +    I L+D+ ++ LD DKR  L   +   GSQ+F+T  D
Sbjct: 289 LNQHSSRGCIFLIDDFASELDVDKRRLLATRLKQCGSQVFITAID 333


>gi|104773261|ref|YP_618241.1| recombination protein F [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|123378549|sp|Q1GC40|RECF_LACDA RecName: Full=DNA replication and repair protein recF
 gi|103422342|emb|CAI96850.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 381

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 158/358 (44%), Gaps = 23/358 (6%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
           S FRN A L L FD    +F+G+N  GKTN+LEAI FL+  R  R ++  ++   G   F
Sbjct: 9   SGFRNLAPLNLEFDPHVNVFLGENAQGKTNLLEAIYFLAISRSHRTSNDREMIAFGQ-DF 67

Query: 73  FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
            S   RV   +   D+ I +  +     +   +N V    + +   HL      P    +
Sbjct: 68  ASLAGRVHKRQLDLDLRIVISKKG----KSAWVNRVEQARLSKYVGHLNAILFSPEDMEL 123

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEA 188
             G    RRRF+D     I+P +      + +L++ RN  L +       D      +  
Sbjct: 124 VKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQVLLGVLTE 183

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           Q+A    ++   R   +  L+    E  +  +    +L +      K + +      +  
Sbjct: 184 QVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAK-EITAADQPAQIK 242

Query: 249 KKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLA 302
           +KL D      D   RR  T +GPHR DL      K    AH   S G+Q+ + + + LA
Sbjct: 243 QKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKN---AHLFASQGQQRTIALSLKLA 299

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
             +LI   TG  PILLLD++ + LD++++ AL   +    +Q F+T TD    DS+++
Sbjct: 300 EIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFIHG-QTQTFITTTD---LDSISQ 353


>gi|260665213|ref|ZP_05866062.1| recombination protein F [Lactobacillus jensenii SJ-7A-US]
 gi|260560950|gb|EEX26925.1| recombination protein F [Lactobacillus jensenii SJ-7A-US]
          Length = 374

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 151/362 (41%), Gaps = 34/362 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  +RN+  L   F     IF+G N  GKTN+LEA+ FL+  R  R  S  ++ R
Sbjct: 3   LKQLKLQNWRNFEELETGFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  +       + G    + +   L+ R +   +   IN +    +      L      
Sbjct: 63  FGQKATI-----LSGHVVKSQVETDLQVRINAKGKKAWINRIEQSKLSRYVGQLTAILFS 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P    +  G    RRRF+D     I+P +      + ++++ +N  L +       D  +
Sbjct: 118 PEDLALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSKDKVF 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI-------------MEYVQKENFPHIKLSLT 229
              +  Q+A L  +I   R++ +  LS                +E V   + P     +T
Sbjct: 178 LEVLSDQLAGLAAEIISRRLKYLTYLSEYAKKAYAAISNEKEQLEVVYNPSVPLTSEQIT 237

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
              +  + +     K+  A ++  G         TL GPHR DL     DK     + S 
Sbjct: 238 S--ESIYHEVLACFKKNEAGEIRTG--------TTLSGPHRDDLKF-LLDKKDAHLYASQ 286

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q+ + + + LA  +LI   TG  P LLLD++ + LD  +++AL   +    +Q F+T 
Sbjct: 287 GQQRTIALSLKLAEIQLIHQITGEYPALLLDDVMSELDHTRQSALLNYIHG-KTQTFITT 345

Query: 350 TD 351
           TD
Sbjct: 346 TD 347


>gi|145592571|ref|YP_001156868.1| recombination protein F [Salinispora tropica CNB-440]
 gi|189039640|sp|A4X0U0|RECF_SALTO RecName: Full=DNA replication and repair protein recF
 gi|145301908|gb|ABP52490.1| DNA replication and repair protein RecF [Salinispora tropica
           CNB-440]
          Length = 377

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 158/358 (44%), Gaps = 26/358 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR+Y  + +  +    + VG NGVGKTN++EA+ +++     R A+ A + R
Sbjct: 3   VRRLELVDFRSYERVGVDLEPGANVLVGPNGVGKTNLIEALGYVATLDSHRVATDAPLVR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +G+ +     A V EG E    + ++LE    R+ R         R  D L   LR+   
Sbjct: 63  MGAAAGIIRCAVVHEGRE----LLVELEIVPGRANRARLGRSPARRARDVLGA-LRLVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178
            P    +  G   +RRR+LD ++    PR+     D+ER++R RN LL   Y        
Sbjct: 118 APEDLELVRGDPAQRRRYLDDLLVLRQPRYAGVRTDYERVVRQRNALLRTAYLARKTGGT 177

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL-----SLTG 230
              D S  +  +  +A  G ++   R++++ AL+  +                   S   
Sbjct: 178 RGGDLSTLAVWDDHLARHGAELLAGRLDLVAALAPHVNRAYDAVAAGAGAAGIAYRSSVE 237

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                 D++   L    +  L  GR  +     TL+GPHR +L +          + S G
Sbjct: 238 LASSTADRA--DLTAALSDALAAGRTAEIERGTTLVGPHRDELTLTLGPLPAK-GYASHG 294

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           E     + + LA   L+    G  P+L+LD++ A LD  +R+ L  +V D  SQ+ +T
Sbjct: 295 ESWSFALALRLAGYDLL-RADGIEPVLVLDDVFAELDTGRRDRLAELVGD-ASQLLVT 350


>gi|194477068|ref|YP_002049247.1| putative DNA repair and genetic recombination protein RecF
           [Paulinella chromatophora]
 gi|171192075|gb|ACB43037.1| putative DNA repair and genetic recombination protein RecF
           [Paulinella chromatophora]
          Length = 390

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 174/374 (46%), Gaps = 50/374 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           I++  L + +FRNY+   L  +    + +G+NG GK+N+LEA+  L      R  +  D+
Sbjct: 20  IRLHRLELKQFRNYSYQELQLETPRLLLIGNNGEGKSNLLEAVELLGSLHSNRCKNDHDL 79

Query: 65  TRIGSPSFFSTFARVEGMEGLADISI-------------KLETRDD--RSVRCLQINDVV 109
            R G  S  ST + +   E   +++I             KLE + D   S+RC+  + + 
Sbjct: 80  IRQGHSS--STISAIIDSEDSIELTIQEHGGRQAKRNGKKLERQHDLLNSLRCVGFSSLD 137

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
           +++V                     G    RR++LD++V  ++P +   + +++RL++ R
Sbjct: 138 LQLV--------------------RGEPALRRQWLDKVVIKLEPVYNELLNNYKRLLKQR 177

Query: 170 NRLLTEGYFDSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENF 221
           N+LL +   +++    +   + Q++ +  +I+  R   +  L  L + + Q     +E  
Sbjct: 178 NQLLRKDISNNNRNELLDIFDQQLSLISARIHRRRYRALKRLEPLAVYWQQQLSKGREEL 237

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
             +  S   F+ G+  +  C  + +   +L   R+ +  + R  +GPHR ++ +   +  
Sbjct: 238 ALVYKSGISFI-GEESEDSC--RNKLLMQLKKQRQNELYTYRCTVGPHRDEIDI-MLNGM 293

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               +GS G+Q+  ++ + +A   LI+      PIL+LD++ A LD  ++  L + +   
Sbjct: 294 FARYYGSAGQQRTTVLALKIAELELINQVHKDPPILILDDVMAELDSGRQELLLKTMG-A 352

Query: 342 GSQIFMTGTDKSVF 355
             Q  ++ T+  +F
Sbjct: 353 NYQCLISSTNLDIF 366


>gi|169335586|ref|ZP_02862779.1| hypothetical protein ANASTE_02001 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258324|gb|EDS72290.1| hypothetical protein ANASTE_02001 [Anaerofustis stercorihominis DSM
           17244]
          Length = 366

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 164/360 (45%), Gaps = 17/360 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + I+ FRN   +   F+ ++ IF G N  GKTN LEA+S    G   R  + ++  +
Sbjct: 3   IENIEITNFRNIEKINTSFNKKYNIFYGKNAQGKTNFLEALSLTLNGMSHREKNTSNFIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G    FS  +     E   D  IK   +D R     +IN   I+   EL +   +    
Sbjct: 63  NGED--FSLISAKVIKEDDIDTFIKCVIKDKRKY---EINSSPIKSRTELLREYNLVMFT 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183
           P   +I  G   +RR+FL+  +  I P +   +  + + ++ RN +L   ++    SS  
Sbjct: 118 PEDLKIIKGYPADRRKFLNESISHIFPSYHSALRKYNKALKQRNAILRDYSKRNIASSLL 177

Query: 184 SSIEAQMAELG---VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              +  +  +G   +KI I  ++ I  +++ + + V K+       S     + K     
Sbjct: 178 EVYDETLYTIGSDIIKIRINVLKKIEKITNELNKEVSKDEEVRFFYSSNVLENAK---DL 234

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +K  Y K L + R  D M   T IG H  D+ + + +   T    S G+Q+ + + + 
Sbjct: 235 KDIKSLYKKALKNSRNDDLMKGSTTIGVHHDDINI-FLNDLDTKKFASQGQQRSISLCMK 293

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+  +L+ +     PI+LLD++ + LD+ ++  +  ++ D  +Q F+T  + S  + +++
Sbjct: 294 LSLIKLLHDKFDDYPIVLLDDVMSDLDKFRQKQILNLIKD--TQSFITCVNYSFLEDIDD 351


>gi|270289889|ref|ZP_06196115.1| DNA replication and repair protein recF [Pediococcus acidilactici
           7_4]
 gi|270281426|gb|EFA27258.1| DNA replication and repair protein recF [Pediococcus acidilactici
           7_4]
          Length = 374

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 158/358 (44%), Gaps = 23/358 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRNYA L + F +   + +G+N  GKTN+LE+I FL+  R  R ++  D+  
Sbjct: 3   LKTLELHNFRNYADLSVEFGSGINVLLGENAQGKTNLLESIYFLALTRSHRTSNDRDL-- 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           IG   + +  ARV G          +E       +  ++N +    + +    L +    
Sbjct: 61  IG---WKAKEARVLGTIQKEHTQTPVEIDISSKGKNAKVNHIEQGRLSQYVGQLNVILFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS----W 182
           P    I  G    RRRF+D     +  ++      +  +++ RN+ L +   D      +
Sbjct: 118 PEDLSIVKGSPAVRRRFIDMEFGQMSSKYLYNSAQYRSVLKQRNQYLKQLQIDPKGDQVY 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIKLSLTGFLDGK 235
              +  Q+A  G +I   R++ +  L          I + ++K  F ++   L       
Sbjct: 178 LDVLSDQLAAYGAEIIFQRIQFLKKLEEWSQAVHEEISQGLEKLTFQYVS-PLKKDETTS 236

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            +  + AL+E   K     R+ +    +TL+GPH  D+      K ++   GS G+Q+  
Sbjct: 237 TETIYTALQELLKKH----RQRELQQGKTLVGPHLDDVRFIVNGKNVS-TFGSQGQQRTT 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            + + LA   L+   TG  P+LLLD++ + LD+ ++  L   + +   Q F+T T  S
Sbjct: 292 ALSVKLAEIDLMKEETGEYPVLLLDDVLSELDDSRQTHLLTAIQN-KVQTFITTTSLS 348


>gi|255027379|ref|ZP_05299365.1| recombination protein F [Listeria monocytogenes FSL J2-003]
          Length = 340

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 149/343 (43%), Gaps = 45/343 (13%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       S+ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q 
Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           A++ + +   R + I  L                  +    +  +  +    LK EY   
Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228

Query: 251 L-FDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           +  +G           +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 ITLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
           +   + I LA   LI   TG  P+LLLD++ + LD+ +++ L 
Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLL 330


>gi|116871427|ref|YP_848208.1| recombination protein F [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123460552|sp|A0AEJ1|RECF_LISW6 RecName: Full=DNA replication and repair protein recF
 gi|116740305|emb|CAK19423.1| DNA replication and repair protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 370

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 158/364 (43%), Gaps = 46/364 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       ++ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRVVKRGQTVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q 
Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPMLLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249
           A++ + +   R + I  L                  +    +  +  +    LK EY A 
Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228

Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
              +G           +KM+S+ +R      TL+GPHR D +  Y +       GS G+Q
Sbjct: 229 VTLNGDDPDTWKADLLQKMESIKQREIDRGVTLVGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + + LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  
Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346

Query: 353 SVFD 356
           S  D
Sbjct: 347 SGID 350


>gi|305681550|ref|ZP_07404356.1| DNA replication and repair protein RecF [Corynebacterium
           matruchotii ATCC 14266]
 gi|305658710|gb|EFM48211.1| DNA replication and repair protein RecF [Corynebacterium
           matruchotii ATCC 14266]
          Length = 382

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 162/358 (45%), Gaps = 27/358 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L++ +FR++    +      T+FVG NG GKTN++EAI +++     R A  A + R
Sbjct: 3   IRELSLRDFRSWPHCHVRLGPGITLFVGRNGHGKTNLVEAIGYVAHLGSHRVAQDAPLVR 62

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G P+   S  A  +  E  A + I     +  S+   ++N        EL   +R    
Sbjct: 63  HGQPNARVSATAVRDDRELTAHLLINASGANQASINRTRLNS-----PRELLGVVRTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGYF 178
            P    +  G   ERRR+LD ++    PR      D+E+++R R  LL         GY 
Sbjct: 118 CPEDLALVRGEPAERRRYLDNIIATRRPRLAGVKADYEKVLRQRTTLLKTSSAALRRGYS 177

Query: 179 --DSSWCS--SIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFP-HIKLSLTG 230
             D S  +    +AQ+A  G ++  AR  ++  L  L+ E    +  E+ P HI    T 
Sbjct: 178 GDDGSLATLDVWDAQLARQGAQMIAARRALVTELDPLVHEAYAGIAPESRPAHIAYEST- 236

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D   D +   ++     +L   R  +    R+L+GPHR DL++   D        S G
Sbjct: 237 VPDVGEDPAL--IEAAMLAELGRMRPKEIDRGRSLVGPHRDDLVITLGDVPAK-GFASHG 293

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           E   +++ + L   +L+    G  P+L+LD++ A LD  +R  L  +  D+  Q+ +T
Sbjct: 294 ETWSMVLALRLGEFQLL-RADGTDPVLILDDVFAELDALRRERLVHLTQDV-EQVLIT 349


>gi|261213261|ref|ZP_05927543.1| DNA recombination and repair protein RecF [Vibrio sp. RC341]
 gi|262402080|ref|ZP_06078644.1| DNA recombination and repair protein RecF [Vibrio sp. RC586]
 gi|260837535|gb|EEX64238.1| DNA recombination and repair protein RecF [Vibrio sp. RC341]
 gi|262351726|gb|EEZ00858.1| DNA recombination and repair protein RecF [Vibrio sp. RC586]
          Length = 363

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 170/366 (46%), Gaps = 20/366 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +   
Sbjct: 6   LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65

Query: 70  PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           P  F    R+      +D   + + +  + D S   ++I     + + +L + L +  + 
Sbjct: 66  PELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184
           P    + +    +RR F+D  VF  +P        F+RL + RN LL   + Y + S+  
Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFYDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I+  R   +N L S + E + +   P   + L  +   + DQ + ++ 
Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKS-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  ++       D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++K
Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351

Query: 364 FMRISN 369
              +++
Sbjct: 352 TFHVAH 357


>gi|253573851|ref|ZP_04851193.1| DNA replication and repair protein RecF [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846328|gb|EES74334.1| DNA replication and repair protein RecF [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 370

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 155/350 (44%), Gaps = 19/350 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  +RNY +L L       + +G N  GKTN+LEA+  L+  +  R     ++   GS
Sbjct: 6   LSLQNYRNYGTLTLDAFGAVNLIIGRNAQGKTNLLEALFVLALTKSHRTGKDKELIAFGS 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                + A VE   G   + ++L  +  ++    ++N +  R + +    + +    P  
Sbjct: 66  DHALVS-AEVEKKYGPVQLELRLSPQGKKA----KLNGLEQRKLSDFIGAMNVVMFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI--- 186
             I  G    RRRFLD  +  + P +   +  +++++  RN LL + +       ++   
Sbjct: 121 LEIVKGTPGVRRRFLDMEIGQVQPSYLYHLQQYQKVLIQRNNLLKQAWGAGPEIKTMLEI 180

Query: 187 -EAQMAELGVKINIARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              Q+ + GVKI   R + I+ L   +  I E +       +KL+         ++    
Sbjct: 181 WNEQLVQHGVKIIKKRKQFISKLQKWAEQIHEGITGGG-ETLKLAYLPSFGTAEEEDEAV 239

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIF 300
           L +++  KL   +  +     TL GPHR DL  I++  +  +   +GS G+Q+   + + 
Sbjct: 240 LLQQFMIKLSQMKDQEIRRGMTLCGPHRDDLSFIINGNEAQV---YGSQGQQRTTALSLK 296

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           LA   LI    G  PILLLD++ + LD  ++  L         Q F+T T
Sbjct: 297 LAEIELIHEEIGEYPILLLDDVLSELDPYRQTQLIETFQS-KVQTFITAT 345


>gi|297558989|ref|YP_003677963.1| DNA replication and repair protein RecF [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843437|gb|ADH65457.1| DNA replication and repair protein RecF [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 377

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 156/356 (43%), Gaps = 21/356 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +++FR+Y    +      ++FVG NG GKTN++EAI +++     R +S   + R
Sbjct: 3   VSHLQLADFRSYREALVEMGPGVSVFVGANGQGKTNLVEAIGYVATLGSHRVSSDTPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+P       R + +     + + LE    R+ R  +IN        E+   LR     
Sbjct: 63  QGAP---RAIVRAKVVRDERSMVVDLELNPGRANRA-RINQAPAGRPREVLGILRTVLFA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---------Y 177
           P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL             
Sbjct: 119 PEDLALVKGDPGERRRFLDDLLVARAPRMAGVRSDYDRVLKQRNALLKSASGRMFRQRSA 178

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDG 234
            D S     ++ +AE G ++  AR+E++  L   I E    +     P +    +G +  
Sbjct: 179 PDLSTLEVWDSHLAETGAELLAARLELVEELRPRIAEAYAGLTDSGGPAVPDYRSGAVPE 238

Query: 235 KFDQSF--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
             +       L E     + + R  +     +L+GPHR DL++          + S GE 
Sbjct: 239 GVEPPTGRPQLVETLRAAMAEARDRELQRGVSLVGPHRDDLVLRLGGMPAK-GYASQGES 297

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
               + + LA   L+  + G  P+L+LD++ A LD ++R  L   V D   Q+ +T
Sbjct: 298 WSYALSLKLAAFDLL-RSDGDDPVLILDDVFAELDSERRRRLAERVGD-AEQVLVT 351


>gi|329767181|ref|ZP_08258708.1| hypothetical protein HMPREF0428_00405 [Gemella haemolysans M341]
 gi|328836848|gb|EGF86495.1| hypothetical protein HMPREF0428_00405 [Gemella haemolysans M341]
          Length = 378

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 174/386 (45%), Gaps = 36/386 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK L +  FRNY S+ +       + VG+N  GKTNI+E+I  L+ GR +R  S ++ 
Sbjct: 1   MRIKSLKLLYFRNYLSMNIDVHPSLNVLVGNNANGKTNIIESIFCLALGRSYRTKSDSEC 60

Query: 65  TRIG-SPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
              G + +  S       + ++ +  IS K ++     V+  ++ D     V ELN    
Sbjct: 61  IMFGETATAMSCVVNKNDKNLDIMLGISNKGKSAKIAGVKKTKLTD----FVGELN---- 112

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------ 175
           +    P   ++  G    RR F++R  +     + +  + ++ L++ RN  L +      
Sbjct: 113 VVLFSPEDLQLVKGSPSLRREFINREFYQFSRIYHKYYLMYQHLLKQRNSYLKDMRKNPK 172

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL----IMEYVQKENFPHIK------ 225
                ++  ++ +Q+A++ + I   RV  +  +S L    +M     +    I+      
Sbjct: 173 DEMSLAYLETLTSQLAKVAIYITKERVSFVQDISELTYKNMMNISNGQESLKIRYKSSVL 232

Query: 226 --LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
             L++    D  F +    L +   KK FD    D M   T IGPH+ DL   Y +    
Sbjct: 233 ESLNIADITDEGFTEE--NLTKVMMKKFFD----DIMRGSTKIGPHQDDLEF-YINDLDA 285

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
             + S G+Q+ +++ + LA    + + TG  P+LLLD++ + LD++++  L   + +   
Sbjct: 286 KMYASQGQQRSIVLSLKLAEINYLKSKTGTYPVLLLDDVLSELDKNRQLKLLDAINENVQ 345

Query: 344 QIFMTGTDKSVFDSLNETAKFMRISN 369
               T +   + + L + AK  +I N
Sbjct: 346 TFITTPSISDIKEDLLKKAKVFKIEN 371


>gi|325124859|gb|ADY84189.1| DNA repair and genetic recombination protein [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 381

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 158/358 (44%), Gaps = 23/358 (6%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
           S FRN A L L FD    +F+G+N  GKTN+LEAI FL+  R  R ++  ++   G   F
Sbjct: 9   SGFRNLAPLDLEFDPHVNVFLGENAQGKTNLLEAIYFLAISRSHRTSNDREMIAFGQ-DF 67

Query: 73  FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
            S   RV   +   D+ I +  +     +   +N V    + +   HL      P    +
Sbjct: 68  ASLAGRVHKRQLDLDLRIVISKKG----KSAWVNRVEQARLSKYVGHLNAILFSPEDMEL 123

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEA 188
             G    RRRF+D     I+P +      + +L++ RN  L +       D      +  
Sbjct: 124 VKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQVLLGVLTE 183

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           Q+A    ++   R   +  L+    E  +  +    +L +      K + +      +  
Sbjct: 184 QVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAK-EITAADQPAQIK 242

Query: 249 KKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLA 302
           +KL D      D   RR  T +GPHR DL      K    AH   S G+Q+ + + + LA
Sbjct: 243 QKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKN---AHLFASQGQQRTIALSLKLA 299

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
             +LI   TG  PILLLD++ + LD++++ AL   +    +Q F+T TD    DS+++
Sbjct: 300 EIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFIHG-QTQTFITTTD---LDSISQ 353


>gi|226303493|ref|YP_002763451.1| DNA replication and repair protein RecF [Rhodococcus erythropolis
           PR4]
 gi|259563669|sp|C0ZLE4|RECF_RHOE4 RecName: Full=DNA replication and repair protein recF
 gi|226182608|dbj|BAH30712.1| DNA replication and repair protein RecF [Rhodococcus erythropolis
           PR4]
          Length = 409

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 173/385 (44%), Gaps = 34/385 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++  ++ +FR++ SL L      T+F+G NG GKTN+LE++ +LS     R ++ A + R
Sbjct: 3   VRRFSLRDFRSWDSLTLDLTPGTTVFLGSNGHGKTNVLESLGYLSTLSSHRVSTDAPMIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            GS S F+    V       +++I +E  + +S R  +IN    R   E+   L+     
Sbjct: 63  SGSASAFAGATVVNNGR---ELTIDVELIEGKSNRA-RINQSPTRRPREVLGILQSVMFA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----------TEG 176
           P    +  G   +RRR+LD ++ +  PR      D+++++R R+ LL          + G
Sbjct: 119 PEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDKVLRQRSALLKTAGAALRRGSRG 178

Query: 177 YFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIME---YVQKENFP---HIKLS 227
               +  S++E     +A  G ++   R+E+++ L+  + E    +  E+ P     K S
Sbjct: 179 GESDNVLSTLEVWDGHLAAHGAQLLAGRLELVHDLAPHLAESYRSIAPESRPASIRYKSS 238

Query: 228 LTGFLDGKFDQS--------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           L   LD +F              L+E +  +L   R  +      L+GPHR DL +   D
Sbjct: 239 LGSSLDPEFTDPARISGIDDVAYLEERFHLELAQMRSKEIDRGVCLVGPHRDDLELVLGD 298

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
                   S GE     + + LA   L+    G  P+L+LD++ A LD  +R AL  +  
Sbjct: 299 SPAK-GFASHGESWSFALSLRLAGFALL-RADGSDPVLMLDDVFAELDRRRRRALATVAA 356

Query: 340 DIGSQIFMTGTDKSVFDSLNETAKF 364
                +      + V D L E AKF
Sbjct: 357 TAEQVLITAAVPEDVPDEL-EAAKF 380


>gi|197116405|ref|YP_002136832.1| DNA replication/repair protein RecF [Geobacter bemidjiensis Bem]
 gi|226737801|sp|B5E7P8|RECF_GEOBB RecName: Full=DNA replication and repair protein recF
 gi|197085765|gb|ACH37036.1| DNA replication and repair protein RecF [Geobacter bemidjiensis
           Bem]
          Length = 364

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 159/353 (45%), Gaps = 21/353 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L ++ FRN  ++ L    +  +F G+NG GKTN+LE+I  L+  + F++A  A++
Sbjct: 1   MKLIKLKLASFRNLQNIELAPGKKFNVFYGNNGQGKTNLLESIYLLATMKSFKQARNAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +F   FA V+G      +  ++    ++  +  +++  ++  +D+   +L +  
Sbjct: 61  I-----AFAGEFALVKGTVERDQVRREIAVLIEKQGKKAKVDAKLMTRLDDFFGNLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSW 182
             P    +  G    RRR+LDR VF  D  +     D+ ++++ RN LL   E      W
Sbjct: 116 FTPEEISMVRGGPDLRRRYLDRAVFTCDLGYLTAYHDYAKILKNRNALLKVNETTGIEVW 175

Query: 183 CSSIEAQMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
              +  Q A L ++   A ++ I   L     E    +    I+  L G      D+   
Sbjct: 176 TEQL-VQAALLVIERRKAYLDRIGKLLQGFYSEISGNDETVQIEYRLHG-----VDERLL 229

Query: 242 ALKEEYAKKLFDGRKMDSMSRR----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           A  E+ A  L    +  +   R    T IGPHR DL      ++      S G+Q+  ++
Sbjct: 230 A--EDPAGALNQALRAHAAEERRRGTTAIGPHRDDLYFGLNGRSAR-QFASQGQQRSFVL 286

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            + +A    I+      P+LLLD++++ LD ++   L   +     Q+F+T T
Sbjct: 287 ALKMAEIEHITRCFEAPPVLLLDDMTSELDRERNRNLMEFLKKREMQVFITTT 339


>gi|170724373|ref|YP_001758399.1| recombination protein F [Shewanella woodyi ATCC 51908]
 gi|226737835|sp|B1KCX5|RECF_SHEWM RecName: Full=DNA replication and repair protein recF
 gi|169809720|gb|ACA84304.1| DNA replication and repair protein RecF [Shewanella woodyi ATCC
           51908]
          Length = 365

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 165/362 (45%), Gaps = 25/362 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  FRN +S +L       +  G NG GKT++LEAI FL  GR FR      V +   
Sbjct: 6   LHIETFRNISSAQLHPSDGLNLIYGQNGSGKTSVLEAIYFLGMGRSFRSHLSQRVIQ-HQ 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA +   E  + I ++     +  V+   IN   I+ +  L + L I  + P S
Sbjct: 65  DDKLTLFANLSLGEQESKIGLRRFRSGETEVK---INGDKIKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCSSI 186
              +F G    RR+F+D   F  D        + +R+++ RN+LL     Y    +    
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDKSFHSAWANVKRILKQRNQLLKNQVSYSQIQFWDKE 180

Query: 187 EAQMAELGVKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             + +EL   I    V+ +N  L  +I+E++ +     +K+S T   D K D  F  L E
Sbjct: 181 LVRYSELVTLIRKEYVDSLNEQLKGIIVEFLPQ---VEVKVSFTRGWDSKTD--FGQLLE 235

Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + +  G         T  GPH++DL +      +  A  S G+ K+++  + +A  
Sbjct: 236 TQYLRDVAAG--------NTGSGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363
           +L+   T    I L+D++ + LD   R  L + + D G+QIF+T  D  ++ DSL     
Sbjct: 287 KLLKQQTDKNSIYLVDDLPSELDAKHRQLLLQQLMDTGAQIFVTAIDPAAIVDSLTTPPS 346

Query: 364 FM 365
            M
Sbjct: 347 KM 348


>gi|315225438|ref|ZP_07867252.1| recombination protein F [Capnocytophaga ochracea F0287]
 gi|314944711|gb|EFS96746.1| recombination protein F [Capnocytophaga ochracea F0287]
          Length = 374

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 158/358 (44%), Gaps = 36/358 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++  ++N  S   VF      FVGDNGVGKTN+L+AI  L   + +   S     R
Sbjct: 4   LKQISVVNYKNILSQAYVFSPTINCFVGDNGVGKTNLLDAIYHLGMAKSYFTTSAVQNVR 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI---------RVVDELN 117
            G       F  +EG         + E R+++ V  L+     +         R+ D + 
Sbjct: 64  HGEE-----FYLIEG-------QFRQEEREEQIVCSLKKGQKKVMKHNGKAYERLADHIG 111

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-- 175
           K+  +       D I  G S  RR+FLD ++   D  +   ++ + R +  RN LL +  
Sbjct: 112 KYPMVLISPSDRDLIVEG-SETRRKFLDSVISQTDRAYLELLLRYNRTLLQRNTLLKQMA 170

Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
             G F        + Q+A LG  I   R   +     +  E     +    ++SL     
Sbjct: 171 EGGVFSLETLHIYDEQLAPLGQHIYEKRRAFMKEFLPIFSEQYAYISGGKERVSL----- 225

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            ++D S    + + A +L +  + D  ++ T  G H+ DL+ +  +      +GS G+QK
Sbjct: 226 -QYDSSLH--QSDLATQLAENTERDRSAQYTTAGIHKDDLLFE-IEGYPMKKYGSQGQQK 281

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGT 350
             L+ + L+   ++  + G  PI+LLD+I   LD+ +   L ++VT     Q+F+T T
Sbjct: 282 SFLIALKLSQFEVLKQSLGITPIVLLDDIFDKLDDTRVTQLVQLVTQKHFGQLFITDT 339


>gi|192361120|ref|YP_001980527.1| recombination protein F [Cellvibrio japonicus Ueda107]
 gi|226737773|sp|B3PEM4|RECF_CELJU RecName: Full=DNA replication and repair protein recF
 gi|190687285|gb|ACE84963.1| RecF protein [Cellvibrio japonicus Ueda107]
          Length = 365

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 171/376 (45%), Gaps = 29/376 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +   RN  S+ +   ++  +  G NG GKT++LEAI+ L+ GR FR   +  +     
Sbjct: 6   LRVHHLRNLESVDIEPSSRVNLIYGLNGSGKTSLLEAINVLALGRSFRSHKHKPLISHQQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F + F RV   +  A+I I ++ R+ +    L+ N   +  + +L   L +  +    
Sbjct: 66  LAF-TIFGRVLADDA-AEIPIGIQ-RNQQGEVMLKANGANVGSIADLAIFLPVQVINSDT 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             +  G    RR+F+D +VF ++ +   +    +R ++ RN LL     D    S+ + +
Sbjct: 123 FLLLEGSPKVRRQFMDWLVFHVEHQFYPQWKSLQRCLKHRNSLLRRDRIDPFELSTWDQE 182

Query: 190 MAELGVKINIARVE----MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           + +L  +I+  R +     +     L+ E+V  E            L+  + + +   K+
Sbjct: 183 LVQLTEQIHCFREQCMALFVPVFEQLLQEFVVLEG-----------LELHYQRGWDKHKD 231

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            YA+ L D  + D     T  G HR++L   ++  D A  +   S G+QK+++  + +A 
Sbjct: 232 -YAQVLQDSFERDKRLGVTHAGSHRAELRITLNGQDAAEIL---SRGQQKLLVCALKIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-----FDSL 358
             + S  TG   I L+D++ A LDE  R  L   +  + +Q+F+TG ++        D  
Sbjct: 288 GLVFSQVTGRKCIYLVDDLPAELDEQHRQRLVDWLYRMDTQVFITGVERQALLAGWLDKP 347

Query: 359 NETAKFMRISNHQALC 374
             T K   + + +  C
Sbjct: 348 EITPKMFHVEHGRVSC 363


>gi|332997866|gb|EGK17474.1| DNA replication and repair protein recF [Shigella flexneri K-272]
 gi|333013661|gb|EGK33026.1| DNA replication and repair protein recF [Shigella flexneri K-227]
          Length = 357

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 161/364 (44%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +PR      + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPRFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|313676601|ref|YP_004054597.1| DNA replication and repair protein recf [Marivirga tractuosa DSM
           4126]
 gi|312943299|gb|ADR22489.1| DNA replication and repair protein RecF [Marivirga tractuosa DSM
           4126]
          Length = 367

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 170/359 (47%), Gaps = 37/359 (10%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++K++ + +++F+NY      F      F+G NG+GKTN+L+AI +L+    F ++++  
Sbjct: 3   KMKLQNIRLAQFKNYPQANFSFVDGINCFLGRNGIGKTNLLDAIYYLA----FTKSAFNA 58

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH- 119
           + +   +   +FFS  A  E  +   ++   +   + + VR         +  ++L++H 
Sbjct: 59  IDKDNILHEEAFFSIKANFEVEDKNIEMLCAVRLGEKKVVRWGG------KEYEKLSEHI 112

Query: 120 --LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--- 174
             L +  +VP    I    S  RR+F D ++  +D  + + ++++  L++ RN LL    
Sbjct: 113 GKLPLVMIVPQDTDIVREASEMRRKFFDNLLCQLDQEYLKLLVNYNHLLKQRNALLKSFL 172

Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGF 231
            +  F +   +  +  M  L +KI+  R +++     +  E+ +   +N   + ++    
Sbjct: 173 EKNRFSADQLAPYDELMIPLAMKISDERNKLMENFLPIFQEFYKDLSDNQEEVAINYDTR 232

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +   F   F   K ++ K    G        RT +G H+ D +     K +    GS G+
Sbjct: 233 VTKSFQSDF---KGQHQKDFRQG--------RTTMGIHKDDYVFLSEGKPVK-KFGSQGQ 280

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD--IGSQIFMT 348
           QK  ++ + LA   L+ +T    P+LLLD+I   LD+ +   L +++ D   G QIF+T
Sbjct: 281 QKSFVIALKLAQFELLKSTKNQKPLLLLDDIFDKLDDKRIAYLLKMMADGRFG-QIFLT 338


>gi|331700399|ref|YP_004397358.1| DNA replication and repair protein recF [Lactobacillus buchneri
           NRRL B-30929]
 gi|329127742|gb|AEB72295.1| DNA replication and repair protein recF [Lactobacillus buchneri
           NRRL B-30929]
          Length = 372

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 162/371 (43%), Gaps = 14/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + +  FRNY    L F     +F+G+N  GKTN+LEAI  L+  R  R  +  ++
Sbjct: 1   MKLTEIELHNFRNYVDQTLEFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTNNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S +      R++   G   I + L ++  R+    ++N +    +      L +  
Sbjct: 61  INWNSQT-AQIKGRLQKRLGTVPIELDLGSKGKRA----KVNHLEQAKLSTYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D     +  R+      ++++++ RNR L + ++    D 
Sbjct: 116 FAPEDLSIVKGAPQVRRRFMDMEFAQMSNRYLYNSTQYKKILKQRNRYLKDLHYKRQKDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q++  G +I   R++++  L         + +    +L+       + DQ  
Sbjct: 176 VYLDVLSDQLSAYGAEIVYQRLQLLKQLEKFAQNVHSEISQGKEQLAFDYHTTVEADQLG 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S  ++ +   K     +  + +   TLIGP R DL      K +  + GS G+Q+   + 
Sbjct: 236 SVESIYQSLLKHFAAIKDKEILRSTTLIGPQRDDLHFVINGKEVQ-SFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDS 357
           + LA   L+   T   PILLLD++ + LD+ ++  L   + D   Q F+T T  S V   
Sbjct: 295 VKLAEIDLMKEQTDEYPILLLDDVLSELDDFRQTHLLTAIQD-KVQTFLTTTSLSGVQQE 353

Query: 358 LNETAKFMRIS 368
           L    +  RIS
Sbjct: 354 LLTNPRIFRIS 364


>gi|312621131|ref|YP_004022744.1| DNA replication and repair protein recf [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201598|gb|ADQ44925.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 353

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 154/349 (44%), Gaps = 23/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK + +  FR Y      F  +  + VG+N  GKT++LEA+ F   G+ F+     D+
Sbjct: 1   MKIKSIYVENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCMCGKSFKS---RDI 57

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123
             I   SF   + ++E +  + D    +    D+++ + + IND  I+ + EL    +  
Sbjct: 58  DAINFDSF---YFKLEMLAEVGDTEYNVFCYVDKALDKRIMINDKKIKKLSELISTFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    +       RRRFLD  V  + P   +   ++ R +  RN  L + Y      
Sbjct: 115 FFEPDATELIKHQPKLRRRFLDMEVTKLYPYMTKVYSEYHRALLSRNAFL-KSYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+++LG  I   R E+IN LS      ++ +    +       L+ K+  S  A 
Sbjct: 174 DVYDMQISQLGFLIFQKRQEVINKLS------IEAQKIFSLVFENKSMLELKYMPSIIAS 227

Query: 244 KE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            + EY K++      D     T  G HR D  +   DK   I   S G+ K+  + + LA
Sbjct: 228 NDKEYYKEIKKNIDKDLSFGYTTKGVHRDDFEI-LIDKKPAINFASEGQIKLAAISVVLA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + L        P+L+LD++ + LD  KR  L + ++   S  F+T  +
Sbjct: 287 TSLLYPE-----PVLILDDVFSELDSFKRKNLVKFISQYQS--FVTSAE 328


>gi|149280279|ref|ZP_01886401.1| DNA replication and repair protein RecF, ABC family ATPase
           [Pedobacter sp. BAL39]
 gi|149228968|gb|EDM34365.1| DNA replication and repair protein RecF, ABC family ATPase
           [Pedobacter sp. BAL39]
          Length = 367

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 154/357 (43%), Gaps = 34/357 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + +  F+NY+   + F      FVG+NG GKTN+L+AI +L   +G+     +   +
Sbjct: 3   LKNITLLNFKNYSDANISFSKTVNAFVGNNGAGKTNLLDAIHYLCLCKGYFNPIDSQQIK 62

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                F     F R E  E    I+  ++    +  +  +      +  D+L  H+ +  
Sbjct: 63  TAEDLFLIQGDFDRKEKNEK---ITCGVKRNQKKQFKRNK------KEYDKLASHIGLFP 113

Query: 125 LV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GY 177
           LV   P    +    S ERR+F+D ++   D  +   +I + R ++ RN LL +      
Sbjct: 114 LVMISPYDTNLIMEGSEERRKFMDNVISQTDGSYLDELIFYNRHLQNRNALLKQMSITRS 173

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGK 235
           +D S       Q+   G KI   R + +     L  +Y +   E+   + L     L   
Sbjct: 174 YDPSLLEIYNDQLVASGNKIYAKRQQFMTEFIPLFDQYYRFLTEDKEEVNLQYQSQLA-- 231

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            D SF  L       L    + D +  RT  G H+ +L+       +    GS G+QK  
Sbjct: 232 -DVSFEQL-------LLQSIEKDKVLERTTTGIHKDELVFTIRTTPLK-KFGSQGQQKSF 282

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTGT 350
           L+ + LA    +    GF P+LLLD+I   LDE +   L  +V+  D G QIF+T T
Sbjct: 283 LIALKLAQYAYLQRYKGFKPLLLLDDIFDKLDEFRMQKLMEMVSHDDFG-QIFITDT 338


>gi|315500822|ref|YP_004079709.1| DNA replication and repair protein recf [Micromonospora sp. L5]
 gi|315407441|gb|ADU05558.1| DNA replication and repair protein RecF [Micromonospora sp. L5]
          Length = 376

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 158/376 (42%), Gaps = 35/376 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR+Y  + +  +    + VG NGVGKTN++EA+ +++     R A+ A + R
Sbjct: 3   VRRLELVDFRSYERVGVDLEPGPNVLVGANGVGKTNLVEALGYVATLDSHRVATDAPLVR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +G+ S     A V EG E    + ++LE    ++ R         R  D L   LR+   
Sbjct: 63  MGAASAVIRCAVVHEGRE----LLVELEIVPGKANRARLGRSPARRARDVLGA-LRLVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178
            P    +  G   ERRR+LD ++    PR+     D+ER+++ RN LL   Y        
Sbjct: 118 APEDLELVRGDPAERRRYLDDLLVTRQPRYAGVRADYERVVKQRNALLRTSYLARKTGGT 177

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----------PHIK 225
              D S  +  +A +A+ G  +   R+E++ AL+  + +                 P ++
Sbjct: 178 RGGDLSTLAVWDAHLAQHGADLLAGRLELVAALTPHVAKAYDAVAAGRGAAGIAYRPSVE 237

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           L   G       ++  A          +          TL+GPHR DL +          
Sbjct: 238 LPEPGADRAALAEALAAALTANRAAEIE-------RGTTLVGPHRDDLALTLGPLPAK-G 289

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           + S GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +V      +
Sbjct: 290 YASHGESWSYALALRLAGYDLL-RADGIEPVLVLDDVFAELDTGRRERLAELVGGASQLL 348

Query: 346 FMTGTDKSVFDSLNET 361
                D  V  +L  T
Sbjct: 349 VTCAVDDDVPATLRGT 364


>gi|114565579|ref|YP_752733.1| DNA repair and genetic recombination protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122319237|sp|Q0B0Z2|RECF_SYNWW RecName: Full=DNA replication and repair protein recF
 gi|114336514|gb|ABI67362.1| DNA replication and repair protein RecF [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 365

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 164/362 (45%), Gaps = 15/362 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI    I +FRN   +         IF G+N  GKTNILEA+ +L+ G  FR      +
Sbjct: 1   MKILKFQIKDFRNLKKIEYQPSPGLNIFYGENAQGKTNILEALYYLATGNSFRSNKEKTL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S S     AR    E + D SI          +  +IN    R        LRI  
Sbjct: 61  ISYESSSL-QVQARYNHQERIIDSSITYGL----DGKVFRINKK--RASYNHTDRLRIIL 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G   +RR FLD ++  I   +  ++ ++ ++++ RN LL +   +S   +
Sbjct: 114 FSPDDLYLVKGAPYKRRFFLDFLLGQISNEYLFKLDNYRKILKKRNLLLKKEETNSRSFA 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFP---HIKLSLTGFLD-GKFDQS 239
            I     +L  ++ I+R+ +IN L   I E Y Q  N      I+ +L+  +D GK +  
Sbjct: 174 IINDIFMDLAAQLLISRLNLINVLDEAIQEIYPQINNDGGQLKIRYALSFPVDSGKIN-- 231

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              LK+   K++    + +   + TL+GPH  D+ + Y ++ +     S G+Q+ +++ +
Sbjct: 232 LDILKDSLKKQVESETEKEKKRKTTLLGPHLDDMHI-YLNEQMARLFASQGQQRNIVICL 290

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA         GF PI LLDE+ A LD+ + N L + +     Q F+T      F+ ++
Sbjct: 291 KLAEIMTFRKIKGFFPIFLLDEVLAELDDSRSNKLLKYLAQSPFQSFLTSVKLEKFEVMD 350

Query: 360 ET 361
            +
Sbjct: 351 AS 352


>gi|282898562|ref|ZP_06306550.1| RecF protein [Cylindrospermopsis raciborskii CS-505]
 gi|281196430|gb|EFA71339.1| RecF protein [Cylindrospermopsis raciborskii CS-505]
          Length = 369

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 168/375 (44%), Gaps = 50/375 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  FRNY   ++ F A  TI VG+N  GK+N+LE++  L+  R  R     D  +
Sbjct: 3   LQSLELRHFRNYQEQKVEFTAPKTILVGNNAQGKSNLLESVELLATLRSHRLGKDRDFIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+       A +E + G+ D+++ L     RSV    IN   +R      + +    ++
Sbjct: 63  EGA-EIAQVSAILERITGVNDLTLHLRRNGRRSV---AINGEKVR------RQMDFLGIL 112

Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            +++  FS L +E        RR +LD ++  ++P +   +  + +++R RN  L     
Sbjct: 113 NAVE--FSSLDLELVRGSPAIRRTWLDTLLVQLEPLYAHILHQYNQVLRQRNAFLKTSQQ 170

Query: 179 DS-----SWCSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPH 223
                  S  +  +AQ+   G K+   R   I  L+ +            E ++    P+
Sbjct: 171 KGIKNHDSELAIWDAQLVTTGTKVMRRRNRAIQRLAPIATNWHSSISGKTEKLEINYMPN 230

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAK-KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           + +     +D +  Q F    ++++  +L  G         TL+GPHR D I    ++  
Sbjct: 231 VPI----LIDEELPQFFLDRVQQHSPIELHRG--------TTLVGPHR-DEIELIVNRTP 277

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              + S G+Q+ +++ + LA  +LI       P+LLLD++ A LD  ++N L   + D  
Sbjct: 278 ARQYASQGQQRTLVLALKLAELQLIEEVVNDTPLLLLDDVLAELDLSRQNQLLDAIQD-R 336

Query: 343 SQIFMTGTDKSVFDS 357
            Q  +T T    FD+
Sbjct: 337 FQTLITTTHLGAFDA 351


>gi|302864512|ref|YP_003833149.1| DNA replication and repair protein RecF [Micromonospora aurantiaca
           ATCC 27029]
 gi|302567371|gb|ADL43573.1| DNA replication and repair protein RecF [Micromonospora aurantiaca
           ATCC 27029]
          Length = 377

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 158/376 (42%), Gaps = 35/376 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR+Y  + +  +    + VG NGVGKTN++EA+ +++     R A+ A + R
Sbjct: 3   VRRLELVDFRSYERVGVDLEPGPNVLVGANGVGKTNLVEALGYVATLDSHRVATDAPLVR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +G+ S     A V EG E    + ++LE    ++ R         R  D L   LR+   
Sbjct: 63  MGAASAVIRCAVVHEGRE----LLVELEIVPGKANRARLGRSPARRARDVLGA-LRLVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178
            P    +  G   ERRR+LD ++    PR+     D+ER+++ RN LL   Y        
Sbjct: 118 APEDLELVRGDPAERRRYLDDLLVTRQPRYAGVRADYERVVKQRNALLRTSYLARKTGGT 177

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----------PHIK 225
              D S  +  +A +A+ G  +   R+E++ AL+  + +                 P ++
Sbjct: 178 RGGDLSTLAVWDAHLAQHGADLLAGRLELVAALTPHVAKAYDAVAAGRGAAGIAYRPSVE 237

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           L   G       ++  A          +          TL+GPHR DL +          
Sbjct: 238 LPEPGADRAALAEALAAALTANRAAEIE-------RGTTLVGPHRDDLALTLGPLPAK-G 289

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           + S GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +V      +
Sbjct: 290 YASHGESWSYALALRLAGYDLL-RADGIEPVLVLDDVFAELDTGRRERLAELVGGASQLL 348

Query: 346 FMTGTDKSVFDSLNET 361
                D  V  +L  T
Sbjct: 349 VTCAVDDDVPATLRGT 364


>gi|254291125|ref|ZP_04961922.1| recF protein [Vibrio cholerae AM-19226]
 gi|150422970|gb|EDN14920.1| recF protein [Vibrio cholerae AM-19226]
          Length = 363

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 170/366 (46%), Gaps = 20/366 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +   
Sbjct: 6   LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65

Query: 70  PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           P  F    R+      +D   + + +  + D S   ++I     + + +L + L +  + 
Sbjct: 66  PELF-VHGRICEHSLTSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184
           P    + +    +RR F+D  VF  +P        F+RL + RN LL   + Y + S+  
Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFYDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I+  R   +N L + + E + +   P   + L  +   + DQ + ++ 
Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  ++       D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++K
Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351

Query: 364 FMRISN 369
              +++
Sbjct: 352 TFHVAH 357


>gi|289433378|ref|YP_003463250.1| DNA replication and repair protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289169622|emb|CBH26156.1| DNA replication and repair protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 370

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 46/364 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       ++ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRIEKRGQTVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN  L     +   D      +  Q 
Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNHYLKMLQMKRKVDPLLLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249
           A++ + +   R + I  L +                     +  +  +    LK EY A 
Sbjct: 186 ADVAINLTKRRADFIQKLEAY-----------------AAPIHSQISRGLETLKIEYKAS 228

Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
               G           +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 VTLAGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + + LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  
Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346

Query: 353 SVFD 356
           S  D
Sbjct: 347 SGID 350


>gi|116513232|ref|YP_812138.1| recombination protein F [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275997|sp|Q04CX2|RECF_LACDB RecName: Full=DNA replication and repair protein recF
 gi|116092547|gb|ABJ57700.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 381

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 158/358 (44%), Gaps = 23/358 (6%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
           S FRN A L L FD    +F+G+N  GKTN+LEAI FL+  R  R ++  ++   G   F
Sbjct: 9   SGFRNLAPLNLEFDPHVNVFLGENAQGKTNLLEAIYFLAISRSHRTSNDREMIAFGQ-DF 67

Query: 73  FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
            S   RV   +   D+ I +  +     +   +N V    + +   HL      P    +
Sbjct: 68  ASLAGRVHKRQLDLDLRIVISKKG----KSAWVNRVEQARLSKYVGHLNAILFSPEDMEL 123

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEA 188
             G    RRRF+D     I+P +      + +L++ RN  L +       D      +  
Sbjct: 124 VKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQVLLGVLTE 183

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           Q+A    ++   R   +  L+    E  +  +    +L +      K + +      +  
Sbjct: 184 QVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAK-EITAADQPAQIK 242

Query: 249 KKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLA 302
           +KL D      D   RR  T +GPHR DL      K    AH   S G+Q+ + + + L+
Sbjct: 243 QKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKN---AHLFASQGQQRTIALSLKLS 299

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
             +LI   TG  PILLLD++ + LD++++ AL   +    +Q F+T TD    DS+++
Sbjct: 300 EIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFIHG-QTQTFITTTD---LDSISQ 353


>gi|254302376|ref|ZP_04969734.1| recombination protein F [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322568|gb|EDK87818.1| recombination protein F [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 369

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 163/351 (46%), Gaps = 15/351 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I +LN   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++ +
Sbjct: 6   ITYLN---FRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWL 125
                F S+   +   + +A+  I +  ++    +     N   I   D   K + I   
Sbjct: 63  YNFDEFISS---ISYQDYIANNKISVRFKNIAGAKKEFFFNKKRISQTDFYGK-INIIAY 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   + 
Sbjct: 119 IPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFAI 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCAL 243
            E +  +    I   R+E + +LS ++ ++Y +  N    + L     LD     +   +
Sbjct: 179 YEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTAKVTVEMI 238

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           +E   K++   +  +   + +LIGPH+ D   +++  +  I+    S GE+K ++  + L
Sbjct: 239 QESLKKEILQKKYQEDRYKFSLIGPHKDDYKFLLNGHEAKIS---ASQGEKKSIIFSLKL 295

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   +I       P++++D+I+++ DED+R ++         Q+ ++ TDK
Sbjct: 296 SEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346


>gi|134297885|ref|YP_001111381.1| recombination protein F [Desulfotomaculum reducens MI-1]
 gi|172044201|sp|A4J0F3|RECF_DESRM RecName: Full=DNA replication and repair protein recF
 gi|134050585|gb|ABO48556.1| DNA replication and repair protein RecF [Desulfotomaculum reducens
           MI-1]
          Length = 371

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 160/358 (44%), Gaps = 32/358 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++K L++  FRNY   + +      I  G N  GKTN+LEAI +   G  FR     DV
Sbjct: 1   MRVKKLSLRNFRNYKEAQFIPHPSINIITGPNAQGKTNLLEAIYYSLRGCSFRAEKDRDV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           T     ++ S    +     L+   IKL+ +     + L +N V  R   EL+    +  
Sbjct: 61  T-----NWESNHTVINTEVNLSSRLIKLQWKIQEGSKKLSLNGVE-RPRSELD-LFGVVL 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G   ERR FLD  V  + P + +    + +++  RN LL E     S   
Sbjct: 114 FCPEDLSLIKGSPQERRHFLDYEVGTLSPGYSQLWRQYAKILSQRNSLLKEIRDHRSKQE 173

Query: 185 SIEA---QMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHIKLSLTGF 231
            +E    Q+   G K+   R++++  L  +            E +Q +    + L   G 
Sbjct: 174 VLEVWDEQLYRYGAKVIYLRLQVLKKLIPIARKTHFGLTGGTEELQAKYLSSLVLE-PGL 232

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
            +G+  Q F +     +KK+   R+M+    +TL+GPHR DL +   +       GS G+
Sbjct: 233 SEGQIYQVFSS----SSKKI---RQMELKRCQTLLGPHRDDLSLA-INGVEAKTFGSQGQ 284

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMT 348
           Q+ V + + L+   L  +  G  P+LLLD++   LD  ++N L  +I+  +  Q F+T
Sbjct: 285 QRTVTLSLKLSQLDLWYHEFGEYPVLLLDDVLFELDRSRQNMLIDKILNKV--QTFIT 340


>gi|256545953|ref|ZP_05473308.1| DNA replication and repair protein RecF [Anaerococcus vaginalis
           ATCC 51170]
 gi|256398375|gb|EEU11997.1| DNA replication and repair protein RecF [Anaerococcus vaginalis
           ATCC 51170]
          Length = 357

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 156/351 (44%), Gaps = 23/351 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +++FRNY S  + F+    IF+GDN  GKTN+LE+I +L+  + F+     D+  
Sbjct: 3   IQNLKLNKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDLIM 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                  S    +   +   ++ I +    + + + + +N++      +L    ++    
Sbjct: 63  FNEKE-MSLDGIIRKNQSFKNVHISV----NENKKDIFVNEIKYDKNKDLKSLFKLVLFT 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183
           P    I       RR  +D ++ +++  ++    DF++++  RN+LL      YF +   
Sbjct: 118 PEDLNIIKDGPNFRRDLIDDIIISVNFSYKAVKKDFDKILSQRNKLLKNQRSKYFKTELM 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFC 241
            + + Q+  L  KI   R + I    SLI  Y  K   N    K +LT            
Sbjct: 178 -AFDQQIIRLNYKIYRFREKYI----SLINTYANKNHLNLTENKENLTIIYKPNIR---A 229

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRS--DLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              EEY +K       D    RT  G  R   D+I++  D   T   GS G+Q+  ++ I
Sbjct: 230 KSMEEYGEKFSKNISDDLKYFRTTSGSQRDEIDIIINGKD---TKKFGSQGQQRSAILNI 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            LA+  LI NT+    I+L D++ + LDE + N L   + +  + I  T T
Sbjct: 287 KLANVNLIENTSQDKAIILFDDVFSELDEKRSNFLLENLGEFQTIITATNT 337


>gi|313635494|gb|EFS01731.1| DNA replication and repair protein RecF [Listeria seeligeri FSL
           N1-067]
          Length = 370

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 46/364 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       ++ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRIVKRGQTVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN  L     +   D      +  Q 
Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNHYLKMLQMKRKVDPMLLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249
           A++ + +   R + I  L +                     +  +  +    LK EY A 
Sbjct: 186 ADVAINLTKRRADFIQKLEAY-----------------AAPIHSQISRGLETLKIEYKAS 228

Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
               G           +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 VTLAGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + + LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  
Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346

Query: 353 SVFD 356
           S  D
Sbjct: 347 SGID 350


>gi|237743162|ref|ZP_04573643.1| DNA replication and repair protein recF [Fusobacterium sp. 7_1]
 gi|229433458|gb|EEO43670.1| DNA replication and repair protein recF [Fusobacterium sp. 7_1]
          Length = 369

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 163/350 (46%), Gaps = 13/350 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I +LN   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++ +
Sbjct: 6   ITYLN---FRNLENSSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F S+ +  + +     IS++ +     + +    N   I   D   K + I   +
Sbjct: 63  YNFEEFISSISYQDYIAS-NKISVRFKNITG-AKKEFFFNKKRISQTDFYGK-VNIIAYI 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    + +G    RR F D  +  ID  +   + D+++L++ RN+ L E   +S   +  
Sbjct: 120 PEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKDYDKLLKIRNKYLKENKRNSEEFAIY 179

Query: 187 EAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCALK 244
           E +  +    I   R+E + +LS ++ ++Y +  N    + L     LD     +   ++
Sbjct: 180 EREFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTAKVTIEMIQ 239

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           E   K++   +  +   + +L+GPH+ D   +++  +  I+    S GE+K ++  + L+
Sbjct: 240 ESLKKEISQKKYQEDKYKFSLVGPHKDDYKFLLNGYEAKIS---ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346


>gi|253698659|ref|YP_003019848.1| DNA replication and repair protein RecF [Geobacter sp. M21]
 gi|259563661|sp|C6E7Q7|RECF_GEOSM RecName: Full=DNA replication and repair protein recF
 gi|251773509|gb|ACT16090.1| DNA replication and repair protein RecF [Geobacter sp. M21]
          Length = 364

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 159/353 (45%), Gaps = 21/353 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L ++ FRN  ++ L    +  +F G+NG GKTN+LE+I  L+  + F++A  A++
Sbjct: 1   MKLIKLKLASFRNLQNIELAPGKKFNVFYGNNGQGKTNLLESIYLLATMKSFKQARNAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +F   FA V+G      +  ++    ++  +  +++  ++  +D+   +L +  
Sbjct: 61  I-----AFGGEFALVKGTVERDQVRREIAVLIEKQGKKAKVDAKLMTRLDDFFGNLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSW 182
             P    +  G    RRR+LDR VF  D  +     D+ ++++ RN LL   E      W
Sbjct: 116 FTPEEISMVRGGPDLRRRYLDRAVFTCDLGYLTAYHDYAKILKNRNALLKVNETAGIEVW 175

Query: 183 CSSIEAQMAELGVKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
              +  Q A L ++   A ++ I   L     E    +    I+  L G +D +      
Sbjct: 176 TEQL-VQAALLVIERRKAYLDRIGRLLQGFYSEISGNDETVQIEYRLHG-VDARL----- 228

Query: 242 ALKEEYAKKLFDGRKMDSMSRR----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
              E+ A+ L    +  +   R    T IGPHR DL      +       S G+Q+  ++
Sbjct: 229 -FAEDPAEALNQALRAHAAEERRRGSTAIGPHRDDLYFGLNGRGAR-QFASQGQQRSFVL 286

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            + +A    I+      P+LLLD++++ LD ++   L   +     Q+F+T T
Sbjct: 287 ALKMAEIEHITRCFEAPPVLLLDDMTSELDRERNRNLMEFLKKREMQVFITTT 339


>gi|312792286|ref|YP_004025209.1| DNA replication and repair protein recf [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179426|gb|ADQ39596.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 353

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 158/349 (45%), Gaps = 23/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK + I  FR+Y      F  +  + VG+N  GKT++LEA+ F   G+ F+     DV
Sbjct: 1   MKIKRIYIENFRSYKQRFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFKS---RDV 57

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123
             I    F S + ++E    + DI   +    DR++ + + +ND  IR + EL    +  
Sbjct: 58  DAIN---FDSYYFKLEMSAEVGDIEYSILCYVDRALEKRIMLNDKKIRRLSELISLFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    +       RRRFLD  V  + P   +   +++R +  RN  L + Y      
Sbjct: 115 FFEPDTTELIKHQPSTRRRFLDMEVAKLYPYMTKVYSEYQRALLSRNAFL-KSYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA- 242
              + Q+++LG  I   R E+I+ LS      ++ +    +       L+ ++  S  A 
Sbjct: 174 DVYDMQISQLGFLIFQKRQEVIDKLS------IEAQKIFSLVFENKSLLELRYMPSINAS 227

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            +EEY K+L      D     T  G HR D  +   D    I   S G+ K+  V + LA
Sbjct: 228 SEEEYYKELKKCLLKDLNLGYTTKGVHRDDFGI-LIDGKPAIDFASEGQIKLAAVSVVLA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + L +      P+L+LD++ + LD+ KR  L + ++   S  F+T  +
Sbjct: 287 TSLLYTE-----PVLILDDVFSELDKFKRKNLVKFISQYQS--FVTSAE 328


>gi|256027569|ref|ZP_05441403.1| RECF protein [Fusobacterium sp. D11]
 gi|289765528|ref|ZP_06524906.1| DNA replication and repair protein recF [Fusobacterium sp. D11]
 gi|289717083|gb|EFD81095.1| DNA replication and repair protein recF [Fusobacterium sp. D11]
          Length = 369

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 163/351 (46%), Gaps = 15/351 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I +LN   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++ +
Sbjct: 6   ITYLN---FRNLENSSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWL 125
                F S+   +   + +A+  I +  ++    +     N   I   D   K + I   
Sbjct: 63  YNFDEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGK-VNIIAY 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   + 
Sbjct: 119 IPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFAI 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCAL 243
            E +  +    I   R+E + +LS ++ ++Y +  N    + L     LD     +   +
Sbjct: 179 YEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTVKVTIEMI 238

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           +E   K++   +  +   + +L+GPH+ D   +++  +  I+    S GE+K ++  + L
Sbjct: 239 QESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGYEAKIS---ASQGEKKSIIFSLKL 295

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   +I       P++++D+I+++ DED+R ++         Q+ ++ TDK
Sbjct: 296 SEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346


>gi|150006868|ref|YP_001301611.1| putative DNA replication and repair protein [Parabacteroides
           distasonis ATCC 8503]
 gi|262384383|ref|ZP_06077518.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_33B]
 gi|298377294|ref|ZP_06987247.1| RecF protein [Bacteroides sp. 3_1_19]
 gi|301308691|ref|ZP_07214643.1| RecF protein [Bacteroides sp. 20_3]
 gi|166220722|sp|A6L8H5|RECF_PARD8 RecName: Full=DNA replication and repair protein recF
 gi|149935292|gb|ABR41989.1| putative DNA replication and repair protein [Parabacteroides
           distasonis ATCC 8503]
 gi|262294086|gb|EEY82019.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_33B]
 gi|298265708|gb|EFI07368.1| RecF protein [Bacteroides sp. 3_1_19]
 gi|300833215|gb|EFK63833.1| RecF protein [Bacteroides sp. 20_3]
          Length = 365

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 163/362 (45%), Gaps = 32/362 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N     ++F  +   F G+NG+GKTN+L+AI +LS  +     +  D   
Sbjct: 3   LKKLSVLNYKNILQSEVIFSPKMNCFFGNNGMGKTNLLDAIHYLSFCKS--HVNTPDSQI 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121
           I S         V+G       +   E R++     ++           +  D+L++H+ 
Sbjct: 61  INSDQ---DLCVVQG-------NYDYEGREEEIFCAMRRRQRKQFKRNKKEYDKLSEHIG 110

Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           +  LV   P+   +  G S ERRRFLD ++   D  +   +I + + +  RN LL +   
Sbjct: 111 LLPLVMVSPADADLIRGGSDERRRFLDLIISQQDKPYLHALIQYNKALLQRNTLLKDQSM 170

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D+S    +E Q+   G  +   R +++   + +  EY Q         ++ G  +     
Sbjct: 171 DASLYEVLEMQLGMYGQIVYEKRKKLVEDFTPIFNEYYQ---------TICGSAEEVGLH 221

Query: 239 SFCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
               L+E E A KL   R+ D +   T  G H+ +L +      I    GS G+ K  L+
Sbjct: 222 YISQLEETELAGKLAMSRERDRILGYTSSGIHKDELEMTLGGYLIRRV-GSQGQNKTYLI 280

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFD 356
            + LA    ++      PILLLD+I   LD  +   + ++V++ G  QIF+T T++   D
Sbjct: 281 ALKLAQFAFLNKRGQTTPILLLDDIFDKLDASRVEQIIKLVSENGFGQIFITDTNRKYLD 340

Query: 357 SL 358
            +
Sbjct: 341 EI 342


>gi|307133245|ref|YP_003885261.1| gap repair protein [Dickeya dadantii 3937]
 gi|306530774|gb|ADN00705.1| gap repair protein [Dickeya dadantii 3937]
          Length = 361

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 157/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR    A V R   
Sbjct: 6   LLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     R+EG E    + +      D +VR   I+      V EL + L I  + P  
Sbjct: 66  AEFI-LHGRIEGQERERSVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +P       + +RL+R RN  L +  ++    +W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFSAWSNLKRLLRQRNAALRQVSHYGQLRAW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L   I+  R +   A+++ I      +  P   LS + F  G   +S      +
Sbjct: 178 DRELVPLAEGISQWRADYSAAIAADIGSTC-AQFLPEFSLSFS-FQRGWDKES------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T +GPH++D  +     A+     S G+ K+++  + LA    
Sbjct: 230 YAELLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++  T + + D + E  K  
Sbjct: 289 LTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGKMF 348

Query: 366 RISN 369
           R+  
Sbjct: 349 RVEQ 352


>gi|157373149|ref|YP_001471749.1| DNA replication and repair protein RecF [Shewanella sediminis
           HAW-EB3]
 gi|189039644|sp|A8FP48|RECF_SHESH RecName: Full=DNA replication and repair protein recF
 gi|157315523|gb|ABV34621.1| DNA replication and repair protein RecF [Shewanella sediminis
           HAW-EB3]
          Length = 360

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 161/354 (45%), Gaps = 23/354 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  FRN  S +L+      +  G NG GKT+ILEAI FL  GR FR      V +  S
Sbjct: 6   LHIETFRNITSAQLLPGEGINLIYGHNGSGKTSILEAIYFLGMGRSFRSHLSQRVIQ-HS 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA +  ++  + I ++     +  V+   I+   ++ +  L + L I  + P S
Sbjct: 65  DDKLTLFANLNVLDKESKIGLRRFRSGETEVK---IDGDKVKRLSTLAESLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCSSI 186
              +F G    RR+F+D   F  D       ++ +R+++ RN+LL     Y    +    
Sbjct: 122 FALLFEG-PKSRRQFIDWGAFHCDKSFHSAWVNVKRILKQRNQLLKNETSYSQIQFWDKE 180

Query: 187 EAQMAELGVKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             + +E+   I    V  +N  L  +I E++       +K+S T   D K D        
Sbjct: 181 LVRYSEVVTDIRTRYVNSLNEQLKGIIGEFLP---LVDVKVSFTRGWDSKTD-------- 229

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            YA+ L      D  S  T  GPH++DL +      +  A  S G+ K+++  + +A  +
Sbjct: 230 -YAQLLEMQYPRDLASGNTGSGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQGK 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL 358
           L+        I L+D++ A LD   R  L + + D G+Q+F+T  +  ++ DSL
Sbjct: 288 LLKQQIDKNSIYLVDDLPAELDAKHRQLLLQQLIDTGAQVFVTAIEPAAILDSL 341


>gi|256820016|ref|YP_003141295.1| DNA replication and repair protein RecF [Capnocytophaga ochracea
           DSM 7271]
 gi|256581599|gb|ACU92734.1| DNA replication and repair protein RecF [Capnocytophaga ochracea
           DSM 7271]
          Length = 373

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 156/361 (43%), Gaps = 42/361 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++  ++N  S    F      FVGDNGVGKTN+L+AI  L   + +   S     R
Sbjct: 4   LKQISVVNYKNILSQAYAFSPTINCFVGDNGVGKTNLLDAIYHLGMAKSYFTTSAVQNVR 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI---------RVVDELN 117
            G       F  +EG         + E R+++ V  L+     +         R+ D + 
Sbjct: 64  HGEE-----FYLIEG-------QFRQEEREEQIVCSLKKGQKKVMKHNGKAYERLADHIG 111

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-- 175
           K+  +       D I  G S  RR+FLD ++   D  +   ++ + R +  RN LL +  
Sbjct: 112 KYPMVLISPSDRDLIVEG-SETRRKFLDSVISQTDRAYLELLLRYNRTLLQRNTLLKQMT 170

Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI---KLSLTG 230
             G F        + Q+A LG  I   R   +     +       E + +I   K  ++ 
Sbjct: 171 EGGVFSLETLHIYDEQLAPLGQHIYEKRRTFMEEFLPIF-----SEQYAYISGGKERVSL 225

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D    QS      + A +L +  + D  ++ T  G H+ DL+ +  +      +GS G
Sbjct: 226 HYDSSLHQS------DLATQLVENTERDRSAQYTTAGIHKDDLLFE-IEGYPMKKYGSQG 278

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTG 349
           +QK  L+ + L+   ++  + G  PI+LLD+I   LD+ +   L ++VT     Q+F+T 
Sbjct: 279 QQKSFLIALKLSQFEVLKQSLGITPIVLLDDIFDKLDDTRVTQLVQLVTQKHFGQLFITD 338

Query: 350 T 350
           T
Sbjct: 339 T 339


>gi|326802597|ref|YP_004320416.1| DNA replication and repair protein recF [Sphingobacterium sp. 21]
 gi|326553361|gb|ADZ81746.1| DNA replication and repair protein recF [Sphingobacterium sp. 21]
          Length = 365

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 160/391 (40%), Gaps = 60/391 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  F+NY    L F      F GDNG GKTNIL+A+ +LS  + +      D  +
Sbjct: 3   VKELTVINFKNYEEASLTFAPGVNAFTGDNGAGKTNILDALHYLSLCKSYFNP--IDSQQ 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV-------VDELNKH 119
           I   +    F  V+G+          E  D   V    +     +           L  H
Sbjct: 61  IKQQA---DFFMVQGV---------FEKGDQEDVLACSLKRNQKKQFKKNKKDYQRLADH 108

Query: 120 LRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           + +  LV   P+   I S  S ERR+F+D ++   D R+   +I + + ++ RN LL + 
Sbjct: 109 IGVYPLVMISPNDSFIISEGSEERRKFIDNVISQTDNRYLDDLILYNKYLQSRNSLLKQQ 168

Query: 177 Y----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                +D    +    Q+  +G +I   R   IN    +  ++ Q        + L    
Sbjct: 169 ALSKNYDDDLLAVYNEQLVLVGEQIFEKRKLFINPFIEIFNKHYQHLTNDTEPVELV--- 225

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMS---------RRTLIGPHRSDLIVDYCDKAIT 283
                         Y  +LF+ R +D ++          RT  G H+ DL+       + 
Sbjct: 226 --------------YESQLFENRFVDLLNNTLSKDRALERTTTGIHKDDLLFTIHGMPLK 271

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIG 342
              GS G+QK  L+ + LA    +    GF P+LLLD+I   LD+ +   L  +V+ D  
Sbjct: 272 -KFGSQGQQKSFLIALKLAQYSFLRERKGFKPLLLLDDIFDKLDDKRTRKLMEMVSHDDF 330

Query: 343 SQIFMTGTD----KSVFDSLNETAKFMRISN 369
            QIF+T T     ++ F  ++   +   +SN
Sbjct: 331 GQIFITDTSAERVRNTFHGIDVDVRIFEVSN 361


>gi|269124281|ref|YP_003297651.1| DNA replication and repair protein RecF [Thermomonospora curvata
           DSM 43183]
 gi|268309239|gb|ACY95613.1| DNA replication and repair protein RecF [Thermomonospora curvata
           DSM 43183]
          Length = 379

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 161/373 (43%), Gaps = 46/373 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+YA+  +  +   ++FVG NG GKTN++EAI +++     R A+ A +
Sbjct: 1   MHVAHLSLQDFRSYATAEIALEPGVSVFVGPNGQGKTNLMEAIGYVAAHSSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+P       R   +       I+LE    RS R  ++N   +    E+   LR   
Sbjct: 61  IRQGAPR---AIVRAGVVRDDRKALIELEINPGRSNRA-RLNRAPVPRPREILGMLRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----D 179
             P    +  G   ERRRFLD ++ A  PR      D++R++R RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARAPRLAGVRADYDRVLRQRNALLKSAAAHRRPPG 176

Query: 180 SSWCSSIE---AQMAELGVKINIARVEMINALS-----------------SLIMEYVQKE 219
               +++E   + +A +G ++  AR++++  LS                 SL       E
Sbjct: 177 PEMLATLEVWDSHLARVGAELLAARLKLVADLSPLAAKAYAALAPGGGIASLAYRSSLGE 236

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
             P  ++ +         Q+   L EE  +++   R+ +     +L+GPHR +L++    
Sbjct: 237 RLPEDRMPVP-------RQTLAPLIEEALREV---RRQELERGVSLVGPHRDELVLQLGG 286

Query: 280 KAIT--IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
                  +HG +    + L        R      G  P+L+LD++ A LD  +R  L  +
Sbjct: 287 MPARGFASHGESWSLALALRLAAFELLR----ADGDDPVLILDDVFAELDTGRRRRLAEL 342

Query: 338 VTDIGSQIFMTGT 350
           V     Q+ +T  
Sbjct: 343 VAP-AEQVLITAA 354


>gi|68535065|ref|YP_249770.1| recombination protein F [Corynebacterium jeikeium K411]
 gi|260579563|ref|ZP_05847434.1| DNA replication and repair protein recF [Corynebacterium jeikeium
           ATCC 43734]
 gi|97180706|sp|Q4JYF5|RECF_CORJK RecName: Full=DNA replication and repair protein recF
 gi|68262664|emb|CAI36152.1| DNA replication and repair protein RecF [Corynebacterium jeikeium
           K411]
 gi|258602334|gb|EEW15640.1| DNA replication and repair protein recF [Corynebacterium jeikeium
           ATCC 43734]
          Length = 425

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 176/410 (42%), Gaps = 59/410 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +S +R++  L L      TIF G NG GKTNI+EA+ +L+     R  S A + R
Sbjct: 3   VSNLRLSNYRSWEELDLQLSPGITIFSGPNGHGKTNIVEALGYLAHLSSHRVNSDAALVR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +  S  A   G E  A ++I+      R      IN   +    +L   +R +  
Sbjct: 63  RGEEIANISATAVNNGRELTAHLAIRA-----RGSNRAHINRAAMNSQRDLLGVVRTTLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178
            P    +  G   +RR FLD ++ A  PR      D+++ +R RN LL +  F       
Sbjct: 118 SPEDLALIRGEPEQRRHFLDAIMVARYPRLAAVKADYDKALRQRNALLRQSAFALRLVVG 177

Query: 179 ----------------DSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQ-- 217
                             S  +++   ++Q+A LG +I  ARV++++ L+  + +  Q  
Sbjct: 178 APKGASHNLSEDIKADAESALATLDVWDSQLAALGAQIMSARVQIVHDLAPHLQQTYQSL 237

Query: 218 -KENFPHIKLSLTGFLD------------GKFDQSFCALKEEYAK----KLFDGRKMDSM 260
             ++ P   +S T  +D             + +Q    L  E A+    + F  ++   +
Sbjct: 238 APQSRP-AHMSYTSTIDVELADLGIRLGVSEPNQPTALLSPEIAEATLLQAFANKRPQEV 296

Query: 261 SR-RTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317
            R  TL+GPHR D  LI+ +        + S GE     + + LA A  +    G  P++
Sbjct: 297 ERGTTLLGPHRDDVNLILGHQPAK---GYASHGESWSFALSLRLA-AFFMQRGDGVEPVV 352

Query: 318 LLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
           +LD++ A LD  +R  L  +++     +     D+ + ++L + AK   I
Sbjct: 353 ILDDVFAELDSSRRQHLVDLISSAEQVLITAAVDEDIPEALRDVAKIYTI 402


>gi|37524035|ref|NP_927379.1| recombination protein F [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|51316319|sp|Q7NAD1|RECF_PHOLL RecName: Full=DNA replication and repair protein recF
 gi|36783458|emb|CAE12298.1| DNA replication and repair protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 363

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 155/361 (42%), Gaps = 17/361 (4%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I +FRN A+  L         VG NG GKT++LEAI  L  GR FR      V   G   
Sbjct: 8   IRDFRNIAAADLPLATGFNFLVGSNGSGKTSVLEAIYTLGHGRSFRSIQAGRVILHGCDE 67

Query: 72  FFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           F     R+   E   + SI L      D  VR   I+      + EL K L +  + P  
Sbjct: 68  FV-LHGRLGQQENERERSIGLSKNRNGDSKVR---IDGSDGGKIAELAKMLPMQLITPEG 123

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR F+D   F  +PR     ++ +RL++ RN  L +     S     + +
Sbjct: 124 FTLLNGGPKYRRAFIDWGCFHNEPRFFSAWVNLKRLLKQRNAALRQ-VTRYSQIRPWDQE 182

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +IN  R E +  ++  I     K+  P   LS +      F Q +   + +YA+
Sbjct: 183 LIPLANQINQWRGEYVTNITQDITNTC-KQFLPEFTLSFS------FQQGWDK-ESDYAE 234

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++DL +      +     S G+ K+++  + LA     + 
Sbjct: 235 LLERQFERDRTLTYTASGPHKADLRIRAEGTPVEDML-SRGQLKLLMCALRLAQGEYFTR 293

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  +   + D L+  +K  R+ 
Sbjct: 294 QSGQQCLYLLDDFASELDTSRRQLLAARLKSTQAQVFVSAINPDQITDMLDGNSKMFRVE 353

Query: 369 N 369
           N
Sbjct: 354 N 354


>gi|86156433|ref|YP_463218.1| DNA replication and repair protein RecF [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|97180309|sp|Q2ILU8|RECF_ANADE RecName: Full=DNA replication and repair protein recF
 gi|85772944|gb|ABC79781.1| DNA replication and repair protein RecF [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 372

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 159/359 (44%), Gaps = 14/359 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L++ +FRN A++ L    + T+ +G+NG GKTN+LEAI FL+  +  R    A++
Sbjct: 1   MKLLSLHVQDFRNLAAVELAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV---VDELNKHLR 121
            R G+ +  +     EG  G+  +++++        R   ++   +     +D+  + L 
Sbjct: 61  VRFGA-ADAAVAGDFEGPGGVRRVAVQVAA----GGRTASLDGKALGSGARLDDYFEGLA 115

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
                P    +       RRRFLDR  F   P       ++ R +R RN  L  G  +  
Sbjct: 116 SVCFSPDDLLLVKAGPDGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRSGTAEVE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLSLTGFLDGKFDQ 238
             +S    +   G ++ + R +++  L+  +      +     P   L+       +   
Sbjct: 176 --ASFREPLVRAGARLLVRRRDLVAELAPRLRAAFAEISGPAAPEADLAYRAAGGVEVGH 233

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +    A+ L    + D     T  GPH  DL++    K   + +GS G+Q+ +++ 
Sbjct: 234 PEAEVAARLARALETRLERDREKGFTSAGPHMDDLVLALGGKGARL-YGSQGQQRALVLA 292

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           + +A    +    G  P+LLLD++S+ LD  K   L   +  + +Q F+T TD+ + + 
Sbjct: 293 LKIAEIENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTTTDRRLIEP 351


>gi|256848503|ref|ZP_05553945.1| DNA replication and repair protein RecF [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714770|gb|EEU29749.1| DNA replication and repair protein RecF [Lactobacillus coleohominis
           101-4-CHN]
          Length = 374

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 164/362 (45%), Gaps = 31/362 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ +++  FRNY  L++VF     I +G+N  GKTN+LEAI  L+  +  R +   ++ +
Sbjct: 3   LQEMHLKHFRNYDELKVVFSPGINILIGENAQGKTNLLEAIHVLALTKSHRTSKDRELIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 F +    + +E      + LE +  +  + +++N +    +     +L +    
Sbjct: 63  WKHKQAFLSGKVQKQVE-----RVPLEIQLAQGGKRVKVNHLYQSRLSAYVGNLNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P    +  G+   RR+F++     +   +   +  +  L++ RN+ L +       D   
Sbjct: 118 PEDLALVKGVPQVRRQFMNMEFGQMSSAYLYNVSHYHSLLQQRNQYLKQLRSGEQTDRVL 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSL---IMEYV--QKENFPHIKLSLTGFLDGKFD 237
              I  Q+A+ G  I +AR  ++  L      + E++  QKE    +K      +D   +
Sbjct: 178 LGVISDQLAQDGAAIVLARFRLLKQLEKWAQRLHEHISLQKEQL-RLKYVTQLTID---E 233

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRR-----TLIGPHRSDLIVDYCDKAITIAH-GSTGE 291
           Q+     E   +KLFD    D++ R      TL GP R D  + +      + H GS G+
Sbjct: 234 QTTRENLETQLRKLFD----DNLEREIALGTTLAGPQRDD--IHFIVNGQNVQHFGSQGQ 287

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           Q+   + + LA   L+   TG  P+LLLD++ + LD+D++  L   + D   Q F+T T 
Sbjct: 288 QRTTALAVKLAEIDLMKEQTGEYPLLLLDDVLSELDDDRQTHLLTAIQD-KVQTFLTTTS 346

Query: 352 KS 353
            S
Sbjct: 347 LS 348


>gi|256842142|ref|ZP_05547647.1| DNA replication and repair protein recF [Parabacteroides sp. D13]
 gi|256736458|gb|EEU49787.1| DNA replication and repair protein recF [Parabacteroides sp. D13]
          Length = 365

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 164/362 (45%), Gaps = 32/362 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N     ++F  +   F G+NG+GKTN+L+AI +LS  +     +  D   
Sbjct: 3   LKKLSVLNYKNILQSEVIFSPKMNCFFGNNGMGKTNLLDAIHYLSFCKS--HVNTPDSQI 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121
           I S         V+G       +   E R++     ++           +  D+L++H+ 
Sbjct: 61  INSDQ---DLCVVQG-------NYDYEGREEEIFCAMRRRQRKQFKRNKKEYDKLSEHIG 110

Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           +  LV   P+   +  G S ERRRFLD ++   D  +   +I + + +  RN LL +   
Sbjct: 111 LLPLVMVSPADADLIRGGSDERRRFLDLIISQQDKPYLHALIQYNKALLQRNTLLKDQSM 170

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D+S    +E Q+   G  +   R +++   + +  EY Q         ++ G  +     
Sbjct: 171 DASLYEVLEMQLGMYGQIVYEKRKKLVEDFTPIFNEYYQ---------TICGSAEEVGLH 221

Query: 239 SFCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
               L+E E A KL   R+ D +   T  G H+ +L +    + +    GS G+ K  L+
Sbjct: 222 YISQLEETELAGKLAMSRERDRILGYTSSGIHKDELEMT-LGRYLIRRVGSQGQNKTYLI 280

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFD 356
            + LA    ++      PILLLD+I   LD  +   + ++V++ G  QIF+T T++   D
Sbjct: 281 ALKLAQFAFLNKRGQTTPILLLDDIFDKLDASRVEQIIKLVSENGFGQIFITDTNRKYLD 340

Query: 357 SL 358
            +
Sbjct: 341 EI 342


>gi|159900239|ref|YP_001546486.1| DNA replication and repair protein RecF [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|226737805|sp|A9B775|RECF_HERA2 RecName: Full=DNA replication and repair protein recF
 gi|159893278|gb|ABX06358.1| DNA replication and repair protein RecF [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 385

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 163/369 (44%), Gaps = 35/369 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L + +FR Y SL L       +F G N  GKT ILEA+ +L+  R  R    A V R
Sbjct: 3   VSRLQLQDFRIYRSLNLALPPGVCLFYGANAAGKTTILEALYYLATTRSLR----ASVER 58

Query: 67  ----------IGSPSFFSTFARVEGMEG--LADISIKLETR-------DDRSVRCLQIND 107
                     +G P F    A ++      +  I I L+ +          + + ++IN 
Sbjct: 59  ELIALEAAGDLGLPPFARLAASLQPQPEAEMQTIEIVLQRKFGADGDLAPTTSKTIRINK 118

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           +  R +D L   LR+    P    + +G   ERRR+LD  +  ID R+ R +  + +++ 
Sbjct: 119 IARRALD-LIGQLRVVMFAPQDLELVTGAPAERRRYLDVTLSQIDGRYVRALSRYNQVLT 177

Query: 168 GRNRLLTEGYFDSSWCSS-----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
            RN LL          S       + ++A+ GV +   R   +  L  L      + +  
Sbjct: 178 QRNGLLRTSRERGRAASEQDLAFWDEELAKAGVYVLRERRRAVTTLDQLAQRLYAEISGS 237

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
            + L L  +LD        + +    K+L   R+ +     TLIGPHR DL +   ++ +
Sbjct: 238 DLDLRLN-YLDTTPAHDVPSFQAAL-KQL---RREERERGVTLIGPHRDDLSIQLAEREV 292

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
             + GS G+Q+   + + LA A L+ + TG  P+LLLD++ + LD+ +R  L   +    
Sbjct: 293 G-SFGSRGQQRASTLALRLAEAELMHSRTGDRPVLLLDDLLSELDQKRREHLLTTIVRPQ 351

Query: 343 SQIFMTGTD 351
            Q  +T TD
Sbjct: 352 QQTLITATD 360


>gi|227538439|ref|ZP_03968488.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241721|gb|EEI91736.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33300]
          Length = 368

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 158/350 (45%), Gaps = 17/350 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  F+NY    L F  +   F G+NG GKTN+L+AI +LS  + +     +   +
Sbjct: 3   LKQLSVLNFKNYTESALEFLPEVNAFAGENGAGKTNLLDAIHYLSLCKSYFNPIDSQHIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G   +F      E    +  IS  L+    +  +  + +    R+ D + +   +  + 
Sbjct: 63  QGM-DWFMVQGSFENDTRIDVISCSLKKNQKKQFKKNKKD--YPRLADHIGQ-FPLVMIS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P+   I +  S ERR+F+D ++   D  +  ++I + ++M  RN +L +    G  D   
Sbjct: 119 PNDSMIITDGSEERRKFMDNVISQTDHHYLDKLITYNKVMLQRNVMLKQARESGQLDLGL 178

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              +  Q+ E+G +I   R +    +   + E+ +  +F          +   ++     
Sbjct: 179 LEVLNLQLVEVGAQIFEKRQQF---MKDFLPEFEKHYHFLTESAEQVSLV---YESPLMT 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +  ++   L    + D    RT  G H+ DL+    +       GS G+QK  L+ + LA
Sbjct: 233 V--DFQDLLDRNLERDRALERTSQGIHKDDLLFTIHEGMPLKKFGSQGQQKSFLIALKLA 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTD 351
               + +  GF P+LLLD+I   LDE +   L ++V+ D   QIF+T TD
Sbjct: 291 QYSFLQSRKGFKPLLLLDDIFDKLDERRTRKLMQMVSEDDFGQIFLTDTD 340


>gi|296167141|ref|ZP_06849548.1| recombination protein F [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897463|gb|EFG77062.1| recombination protein F [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 385

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 161/365 (44%), Gaps = 34/365 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A   L  +   T+FVG NG GKTN++EA+ F +     R  S   + R
Sbjct: 3   VRHLGLRDFRSWAHADLELEPGRTVFVGSNGFGKTNLVEALWFSATLGSHRVGSDTPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    EG E     ++ LE    R+ +  ++N   +R   E+   LR    
Sbjct: 63  AGADRAVVSTIVVNEGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   ERRR+LD +     P       D+++++R R  LL            
Sbjct: 118 APEDLALVRGDPAERRRYLDDLATVRRPAVAGVRADYDKVLRQRTALLKSAAGMRHRADR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFP---HIKLSLT 229
           G  D+      ++++AE G ++  AR++++N L+  + +  Q     + P     + SL 
Sbjct: 178 GALDT--LDVWDSRLAEHGAELMAARIDLVNQLTPEVEKAYQLLAPASRPASIAYRSSLG 235

Query: 230 GFL---DGKFDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIA 285
             L    G  D+ F       A      R+   + R   L+GPHR DL +   D+     
Sbjct: 236 AQLAADGGGHDREFLEAALLAALAE---RRDAELERGMCLVGPHRDDLELWLGDQPAK-G 291

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
             S GE     V + LA   L+    G  P+LLLD++ A LD  +R AL   V +   Q+
Sbjct: 292 FASHGESWSFAVALRLAAYELL-RADGSEPVLLLDDVFAELDAARRRALA-TVAEAAEQV 349

Query: 346 FMTGT 350
            +T  
Sbjct: 350 LVTAA 354


>gi|260184856|ref|ZP_05762330.1| recombination protein F [Mycobacterium tuberculosis CPHL_A]
 gi|289445528|ref|ZP_06435272.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           CPHL_A]
 gi|289418486|gb|EFD15687.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           CPHL_A]
          Length = 385

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 164/363 (45%), Gaps = 30/363 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A + L      T+FVG NG GKTN++EA+ + +     R ++ + + R
Sbjct: 3   VRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADSPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +G+  +  ST    +G E   D+ I         V   ++N   +R   ++   LR    
Sbjct: 63  VGTDRAVISTIVVNDGRECAVDLEIATG-----RVNKARLNRSSVRSTRDVVGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   +RRR+LD +     P       ++ER++R R  LL            
Sbjct: 118 APEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231
           G FD+      ++++AE G ++  AR++++N L+  + +  Q    P  + +  G+    
Sbjct: 178 GVFDT--LEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLA-PESRSASIGYRASM 234

Query: 232 -LDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHG 287
            + G  +QS    +            + D+   R   L+GPHR DLI+   D+       
Sbjct: 235 DVTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFA 293

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE   + V + LA  +L+    G  P+LLLD++ A LD  +R AL     +   Q+ +
Sbjct: 294 SHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLV 351

Query: 348 TGT 350
           T  
Sbjct: 352 TAA 354


>gi|294781813|ref|ZP_06747146.1| RECF protein [Fusobacterium sp. 1_1_41FAA]
 gi|294481923|gb|EFG29691.1| RECF protein [Fusobacterium sp. 1_1_41FAA]
          Length = 369

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 162/350 (46%), Gaps = 13/350 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I +LN   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+     ++ +
Sbjct: 6   ISYLN---FRNLENTSIELSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTTEMIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F S+ +  + +     IS++ +     + +    N   I   D   K + I   +
Sbjct: 63  YNFDEFISSISYSDYIAN-NKISVRFKNIPG-AKKEFFFNKKRISQTDFYGK-INIIAYI 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   ++   +  
Sbjct: 120 PEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNTEEFAVY 179

Query: 187 EAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCALK 244
           E +  +    I   R+E + +LS ++ ++Y +  N    + L     LD     +   ++
Sbjct: 180 EKEFIKYASYIIFTRLEYVKSLSIILNLQYRKLFNIEQELNLKYETNLDKTGKVTVEMIQ 239

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           E   K++   +  +   + +L+GPH+ D   +++  +  I+    S GE+K ++  + L+
Sbjct: 240 ESLQKEILQKKHQEDRYKFSLVGPHKDDYKFLLNGYEAKIS---ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILEFFNKRDIQVLISSTDK 346


>gi|162446892|ref|YP_001620024.1| DNA replication and repair protein [Acholeplasma laidlawii PG-8A]
 gi|189039616|sp|A9NE68|RECF_ACHLI RecName: Full=DNA replication and repair protein recF
 gi|161984999|gb|ABX80648.1| DNA replication and repair protein [Acholeplasma laidlawii PG-8A]
          Length = 349

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 158/347 (45%), Gaps = 29/347 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  FRN  + +++ +    I  G NGVGKT+ILE+I F +  +  R +   D+ +
Sbjct: 2   ITSIELRNFRNLENYKVLINKPLVIIQGLNGVGKTSILESIYFAATTKSHRSSVEKDMIQ 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              P     +A V+ +E      I L     R+     IN   +R + +    LR+    
Sbjct: 62  YDKP-----YASVKLIEDSKLHEIVLTPNGKRTT----INKSEVRKISDYIGQLRVVMFA 112

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCS 184
           P    +  G   ERR FLD  +  +   + R +  ++++++ RN LL +     D ++ +
Sbjct: 113 PEDLMLIKGSPSERRYFLDMELMQVSKTYLRNLNSYKKILKQRNALLKKNRNLTDYTFLN 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF--CA 242
            +  Q+ ++G++I   R + I AL+         + F  I+   T + D + +  +    
Sbjct: 173 ILGEQLYDVGIQIFDERQKFIEALN---------QKFKTIQ---TKYKDFEVEMLYEPNV 220

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA-HGSTGEQKVVLVGIFL 301
            KE + K L   +K D M   T  G H+ D  + Y  K +      S G  +++++ + L
Sbjct: 221 TKENFLKHLKTKQKQDIMYETTTAGIHKDDFKLLY--KGLNAKDSASQGTSRLIVIELKL 278

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           A    I   T    ILLLD++ + LD +++N LF        Q+F+T
Sbjct: 279 ALLEWIKEVTKTDAILLLDDVLSELDLERQN-LFMSQLSKNHQVFIT 324


>gi|312877902|ref|ZP_07737847.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795328|gb|EFR11712.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 353

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 158/349 (45%), Gaps = 23/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK + I  FR+Y      F  +  + VG+N  GKT++LEA+ F   G+ F+     DV
Sbjct: 1   MKIKRIYIENFRSYKQRFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFKS---RDV 57

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123
             I    F S + ++E    + DI   +    DR++ + + IND  I+ + EL    +  
Sbjct: 58  DAIN---FDSYYFKLEMSAEVGDIEYSILCYVDRALDKRIMINDKKIKRLSELISLFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    +       RRRFLD  V  + P   +   +++R +  RN  L + Y      
Sbjct: 115 FYEPDTTELVKHQPSTRRRFLDMEVAKLYPYMTKVYSEYQRALLSRNAFL-KSYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA- 242
              + Q+++LG  I   R E+I+ LS      ++ +    +       L+ ++  S  A 
Sbjct: 174 DVYDMQISQLGFLIFQKRQEVIDKLS------IEAQKIFSLVFENKSLLELRYMPSINAS 227

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            +EEY K+L      D     T  G HR D  +   D    I   S G+ K+  V + LA
Sbjct: 228 SEEEYYKELKKCLLKDLNLGYTTKGVHRDDFGI-LIDGKPAIDFASEGQIKLAAVSVVLA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + L +      P+L+LD++ + LD+ KR  L + ++   S  F+T  +
Sbjct: 287 TSLLYTE-----PVLILDDVFSELDKFKRKNLVKFISQYQS--FVTSAE 328


>gi|237738563|ref|ZP_04569044.1| DNA replication and repair protein recF [Fusobacterium sp. 2_1_31]
 gi|229424046|gb|EEO39093.1| DNA replication and repair protein recF [Fusobacterium sp. 2_1_31]
          Length = 369

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 163/350 (46%), Gaps = 13/350 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I +LN   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    A++ +
Sbjct: 6   ISYLN---FRNLENTSVELSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTAEMIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F S+ +  + +     IS++ +     + +    N   I   D   K + I   +
Sbjct: 63  YNFDEFISSISYSDYIAN-NKISVRFKNIPG-AKKEFFFNKKRISQTDFYGK-INIIAYI 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   ++   +  
Sbjct: 120 PEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNTEEFAIY 179

Query: 187 EAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCALK 244
           E +  +    I   R+E + +LS ++ ++Y +  N    + L     LD     +   ++
Sbjct: 180 EKEFIKYASYIIFRRLEYVKSLSIILNLQYRKLFNIEQELNLKYETNLDKTGKVTVEMIQ 239

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           E   K++   +  +   + +L+GPH+ D   +++  +  I+    S GE+K ++  + L+
Sbjct: 240 ESLQKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGYEAKIS---ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILEFFNKRDIQVLISSTDK 346


>gi|154684522|ref|YP_001419683.1| recombination protein F [Bacillus amyloliquefaciens FZB42]
 gi|166220699|sp|A7Z0C6|RECF_BACA2 RecName: Full=DNA replication and repair protein recF
 gi|154350373|gb|ABS72452.1| RecF [Bacillus amyloliquefaciens FZB42]
          Length = 370

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 169/390 (43%), Gaps = 54/390 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L ++ +RNY    L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++ R
Sbjct: 3   IQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62

Query: 67  IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                +   +A++EG  M+   DI ++L     +  +  ++N +  + + +    L    
Sbjct: 63  -----WDEDYAKIEGRVMKRNGDIPMQLVI--SKKGKKGKVNHIEQQKLSQYVGALNTIM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRFLD  +  +   +   +  +++++  RN  L +       D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQRNHFLKQLQSRKQTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIK 225
           +    +  Q+ E   K+   R++                   L  L ++Y       H  
Sbjct: 176 TMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKY-------HTA 228

Query: 226 LSLTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
           L ++   D       + +SF  LKE+  ++             TL GPHR D++  Y + 
Sbjct: 229 LDVSDPKDLSKIGNSYQESFSKLKEKEIERGV-----------TLFGPHRDDVLF-YVNG 276

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                +GS G+Q+   + + LA   LI    G  PILLLD++ + LD+ +++ L   +  
Sbjct: 277 RDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG 336

Query: 341 -IGSQIFMTGTDKSVFDSLNETAKFMRISN 369
            + + +  T  D    D+L++   F R+ N
Sbjct: 337 RVQTFVTTTSVDGIDHDTLHQAGMF-RVEN 365


>gi|118467917|ref|YP_884426.1| recombination protein F [Mycobacterium smegmatis str. MC2 155]
 gi|152060497|sp|A0QND8|RECF_MYCS2 RecName: Full=DNA replication and repair protein recF
 gi|152060498|sp|P0C561|RECF_MYCSM RecName: Full=DNA replication and repair protein recF
 gi|1321896|emb|CAA63251.1| recF [Mycobacterium smegmatis]
 gi|118169204|gb|ABK70100.1| DNA replication and repair protein RecF [Mycobacterium smegmatis
           str. MC2 155]
          Length = 384

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 161/362 (44%), Gaps = 31/362 (8%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           + L +++FR++A + L  +   T+FVG NG GKTN++EA+ + +     R A+ A + R 
Sbjct: 4   RHLGLTDFRSWARVDLDLEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVATDAPLIRA 63

Query: 68  GSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           G+  +  ST    EG E    +++ LE    R+ +  ++N   +R   E+   LR     
Sbjct: 64  GAERAIVSTIVVNEGRE----LAVDLEITSGRANKA-RLNRSPVRSAREILGVLRAVLFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FDSS 181
           P    +  G   +RRR+LD +     P       D+++++R R  LL          D S
Sbjct: 119 PEDLSLVRGDPGDRRRYLDELATTRRPALAGVRADYDKVVRQRTALLKTAAGARYRGDRS 178

Query: 182 WCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFL 232
              ++E     +A  G  +  +RV+++  L   + +  Q      +      + S+    
Sbjct: 179 VIDTLEVWDGHLAAHGAALVASRVKLVEELQPEVEKAYQLLAPASRPAAIRYRSSVEAIE 238

Query: 233 DGKFDQSFCALKEEYAKKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGS 288
           D    +S     E Y   L D   R+ D+   R   L+GPHR DL +   D+       S
Sbjct: 239 DAPGPESV----EFYEAALLDALARRRDAELERGVCLVGPHRDDLELRLGDQPAK-GFAS 293

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE   + + + L    L+  + G  P+LLLD++ A LD  +R AL   V     Q+ +T
Sbjct: 294 HGESWSMALALRLGAYELLC-SDGVEPVLLLDDVFAELDTSRRRALA-TVAGSAEQVLVT 351

Query: 349 GT 350
             
Sbjct: 352 AA 353


>gi|90413730|ref|ZP_01221718.1| recombination protein F [Photobacterium profundum 3TCK]
 gi|90325199|gb|EAS41696.1| recombination protein F [Photobacterium profundum 3TCK]
          Length = 359

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 166/363 (45%), Gaps = 18/363 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN  +  L    +    VG NG GK ++LEAI +L  GR FR    + V R   
Sbjct: 6   LIVKDFRNIEACDLALSPRFNFLVGANGSGKNSVLEAIHYLGHGRSFRSHLTSRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              F    RV     L ++ + +  + D +   ++++    + + +L + L +  + P  
Sbjct: 66  QELF-IHGRVLTDNQL-ELPLGINKKRDGTTE-VKVSGESGQKLSQLAQVLPLQLITPEG 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187
             +  G    RR F+D  VF I+P+        +RL + RN LL     Y + S+    +
Sbjct: 123 FELLIGGPKYRRSFIDWGVFHIEPKFYNAWSRIKRLTKQRNALLKTARSYRELSYW---D 179

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            ++A L  +I++ R E + A+     E  Q    P  ++ L+ +   + +  +     E 
Sbjct: 180 QELAVLAEEISVWRDEYLIAVKQKAAEICQG-FLPEYEIQLSYYRGWEKETPYA----EL 234

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
            K+ F+    D     T+ GPH++DL +      +     S G+ K+++  + LA    +
Sbjct: 235 LKRNFE---RDCQLGYTVNGPHKADLRMKVAGTPVEDVL-SRGQLKLMVCALRLAQGLHL 290

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366
           +  TG   I LLD+ ++ LD  +R  L + + +  +Q+F++  +D+ + D  +E  K   
Sbjct: 291 TEATGKQCIYLLDDFASELDSHRRALLAQRLKETNAQVFISAISDEQITDMHDENGKMFH 350

Query: 367 ISN 369
           + +
Sbjct: 351 VEH 353


>gi|302336538|ref|YP_003801745.1| DNA replication and repair protein RecF [Olsenella uli DSM 7084]
 gi|301320378|gb|ADK68865.1| DNA replication and repair protein RecF [Olsenella uli DSM 7084]
          Length = 362

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 163/354 (46%), Gaps = 16/354 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  +RN+    +      T+  G N  GKTN +EA+  L+ G  FR +  A + R
Sbjct: 5   VRSLGLRNWRNFDERNIALADGMTVLHGRNAAGKTNAIEALQMLTAGFSFRHSKPAQLVR 64

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S     AR+EG   + D+S +++    R +R    N    +  D  +  + + +  
Sbjct: 65  -EDQSCALIAARLEGDGRVVDVSCEIDPTRRRFMR----NGKRCQAQDLPSTLMSVLFSP 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
             +  +  G +  RR  LD      +  + + +  + R +  RNRLL +   D +   + 
Sbjct: 120 DDLSFVKRGAAY-RRDELDAFGRQANRSYSKILSAYVRSVEQRNRLLRQECPDLALLEAW 178

Query: 187 EAQMAELGVKINIARVEM----INALSSLIMEYVQKENFPHIKLSLTGF-LDGKFDQSFC 241
           +A +A  G  + ++R+ +    +  +  +  E  + E      +S  G  L+       C
Sbjct: 179 DASVALGGSTLLVSRIHLFERLVEYMCPIYREISEGEELGCRYISSLGLPLEDLSRDEIC 238

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A    +AK+L + R  +   ++TL+GP R DL     D     + GS G+Q+ +++   +
Sbjct: 239 A---AFAKRLCELRPQELRRQQTLVGPQRDDLSFTI-DGRDARSFGSQGQQRSIVLAWKM 294

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           A  +L  + TG  P+LLLD++ + LDE +RNA+ R V   G Q  ++ T+   F
Sbjct: 295 AEVKLSRDVTGEQPLLLLDDVMSELDETRRNAMTRFVQG-GIQAVVSTTNLGYF 347


>gi|153002882|ref|YP_001377207.1| DNA replication and repair protein RecF [Anaeromyxobacter sp.
           Fw109-5]
 gi|166220696|sp|A7H677|RECF_ANADF RecName: Full=DNA replication and repair protein recF
 gi|152026455|gb|ABS24223.1| DNA replication and repair protein RecF [Anaeromyxobacter sp.
           Fw109-5]
          Length = 369

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 154/356 (43%), Gaps = 11/356 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L + +FRN A + L+   + T+ +G+NG GKTN+LEAI FL+  +  R A  A++
Sbjct: 1   MKLLSLAVQDFRNLAQVELLPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRTARLAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ +        +G  G   +++++        R   ++      +D     L    
Sbjct: 61  VRHGAQTGL-VAGDFDGPGGTRRVAVQVAP----GGRVALLDGKPQERLDAYFDGLAAVC 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RRRFLDR  F   P       ++ R +R RN  L  G  +    +
Sbjct: 116 FAPDDLLLVKGGPEGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRGGSPEVE--A 173

Query: 185 SIEAQMAELGVKINIARVEMINALS---SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           S    +   G +I   R +++  L+   S     +     P  + +       + +    
Sbjct: 174 SFRGPLVRAGARIVRRRRDLVEELAPRVSTAFREISGPAAPEARFAYRPAAGVQAEVGEA 233

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            L E     L    + D     T +GPH  +L++   D     A+ S G+Q+ +++ + +
Sbjct: 234 ELAERLEHALAQRLERDRDRGFTSVGPHMDELVL-ALDGRGARAYASQGQQRALVLALKI 292

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           A    +    G  P+LLLD++S+ LD  K   L   +  + +Q F+T TD+ + + 
Sbjct: 293 AEIENLRAALGRPPLLLLDDVSSELDPTKNRYLLAYLAALPAQAFLTTTDRRLIEP 348


>gi|153212933|ref|ZP_01948527.1| recF protein [Vibrio cholerae 1587]
 gi|124116159|gb|EAY34979.1| recF protein [Vibrio cholerae 1587]
          Length = 363

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 170/366 (46%), Gaps = 20/366 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +   
Sbjct: 6   LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65

Query: 70  PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           P  F    R+      +D   + + +  + D S   ++I     + + +L + L +  + 
Sbjct: 66  PELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184
           P    + +    +RR F+D  VF  +P        F+RL + RN LL   + Y + S+  
Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I+  R   +N L + + E + +   P   + L  +   + DQ + ++ 
Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  ++       D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++K
Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351

Query: 364 FMRISN 369
              +++
Sbjct: 352 TFHVAH 357


>gi|187732412|ref|YP_001882466.1| recombination protein F [Shigella boydii CDC 3083-94]
 gi|226737836|sp|B2TUS8|RECF_SHIB3 RecName: Full=DNA replication and repair protein recF
 gi|187429404|gb|ACD08678.1| DNA replication and repair protein RecF [Shigella boydii CDC
           3083-94]
          Length = 357

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 161/364 (44%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D +   T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRLLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|255016100|ref|ZP_05288226.1| putative DNA replication and repair protein [Bacteroides sp. 2_1_7]
          Length = 365

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 163/362 (45%), Gaps = 32/362 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N     ++F  +   F G+NG+GKTN+L+AI +LS  +     +  D   
Sbjct: 3   LKKLSVLNYKNILQSEVIFSPKMNCFFGNNGMGKTNLLDAIHYLSFCKS--HVNTPDSQI 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121
           I S         V+G       +   E R++     ++           +  D+L++H+ 
Sbjct: 61  INSDQ---DLCVVQG-------NYDYEGREEEIFCAMRRRQRKQFKRNKKEYDKLSEHIG 110

Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           +  LV   P+   +  G S ERRRFLD ++   D  +   +I + + +  RN LL +   
Sbjct: 111 LLPLVMVSPADADLIRGGSDERRRFLDLIISQQDKPYLHALIQYNKALLQRNTLLKDQSM 170

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D+S    +E Q+   G  +   R +++   + +  EY Q         ++ G  +     
Sbjct: 171 DASLYEVLEMQLGMYGQIVYEKRKKLVEDFTPIFNEYYQ---------TICGSAEEVGLH 221

Query: 239 SFCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
               L+E E A KL   R+ D +   T  G H+ +L +      I    GS G+ K  L+
Sbjct: 222 YISQLEETELAGKLAMSRERDRILGYTSSGIHKDELEMTLGGYLIRRV-GSQGQNKTYLI 280

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFD 356
            + LA    ++      PILLLD+I   LD  +   + ++V++ G  QIF+T T++   D
Sbjct: 281 ALKLAQFAFLNKRGRTTPILLLDDIFDKLDASRVEQIIKLVSENGFGQIFITDTNRKYLD 340

Query: 357 SL 358
            +
Sbjct: 341 EI 342


>gi|313640122|gb|EFS04741.1| DNA replication and repair protein RecF [Listeria seeligeri FSL
           S4-171]
          Length = 370

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 46/364 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       ++ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRIVKRGQTVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN  L     +   D      +  Q 
Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNHYLKMLQMKRKVDPLLLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249
           A++ + +   R + I  L                  +    +  +  +    LK EY A 
Sbjct: 186 ADVAINLTKRRADFIRKLE-----------------AYAAPIHSQISRGLETLKIEYKAS 228

Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
               G           +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 VTLAGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   + + LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  
Sbjct: 288 RTTALSVKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTST 346

Query: 353 SVFD 356
           S  D
Sbjct: 347 SGID 350


>gi|229542312|ref|ZP_04431372.1| DNA replication and repair protein RecF [Bacillus coagulans 36D1]
 gi|229326732|gb|EEN92407.1| DNA replication and repair protein RecF [Bacillus coagulans 36D1]
          Length = 370

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 160/352 (45%), Gaps = 17/352 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  +RNY +L + F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3   LQELELHNYRNYETLTIPFENKVNVILGENAQGKTNLMEAIYVLALAKSHRTSNDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                + + +A+++G       S+ LE    +  +  + N +  + +     ++ +    
Sbjct: 63  -----WDAEYAKIKGRLHKTHGSVPLELTISKKGKKAKYNHIEQKKLSRYIGNMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P    +  G    RRRF+D  +  I P +   M  F+++++ RN  L +       D + 
Sbjct: 118 PEDLNLVKGSPQVRRRFIDMEIGQISPVYLYDMSRFQKILQQRNHYLKQLQMKKQTDRTM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              +  Q+ E   KI + R E +  L      + +        +++     ++   +  +
Sbjct: 178 LDILTEQLIEQAAKIVMRRFEFVRMLEEWARPIHHSISRGLEQLEIQYKPSVNVSEELDW 237

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVG 298
             + + Y  K  + R+ +     T+ GPHR DL  +V+  D       GS G+Q+   + 
Sbjct: 238 SKMIKSYENKFAEIREREIDRGVTMAGPHRDDLAFVVNGRD---VHTFGSQGQQRTAALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T
Sbjct: 295 VKLAEIELIYSEIREYPILLLDDVLSELDDYRQSHLLNAIQG-RVQTFVTTT 345


>gi|310777808|ref|YP_003966141.1| DNA replication and repair protein RecF [Ilyobacter polytropus DSM
           2926]
 gi|309747131|gb|ADO81793.1| DNA replication and repair protein RecF [Ilyobacter polytropus DSM
           2926]
          Length = 376

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 163/357 (45%), Gaps = 27/357 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  +N   FRN     L F ++  +F+G NG GKT+ILEA+ F + G+ FR     ++
Sbjct: 1   MQISEINYVNFRNLKDNNLKFSSKFNLFLGKNGQGKTSILEAVYFSATGKSFRTPRQNEI 60

Query: 65  -----TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
                 R GS      F   E       +S+KL     +  +    N   ++  D+ +  
Sbjct: 61  INHSRERTGS------FVVFEDSISKKTLSVKL----GKGKKEYSYNKKRVK-YDDFHGK 109

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           L I   +P    + +G    RR F D  +   +  + + + ++ +L++ RN+ L E   +
Sbjct: 110 LNIVSFIPEDISLLTGAPGVRRSFFDYEISQANKEYYQDLKNYTKLLKFRNKYLKEKKHN 169

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFD 237
                  + +  + G +I   R++ +  +S L+    +K  ++   ++L  + FL G+  
Sbjct: 170 DPMFDIYQNEFIKFGARIIKKRLDYVRNISILLNLNYRKLFDDKKELRLKYSCFL-GELK 228

Query: 238 QSFCA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           +   A    L +E   ++F   K    S   L+GP + D I    DK    ++ S GE+K
Sbjct: 229 KVETAQIEKLIQEKINQVFWQEKRYGFS---LVGPQKDDFIFLLNDKEAK-SYASQGEKK 284

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            ++  I L+   +I      +PI ++D+IS++ D  ++ ++ +       Q+F++ T
Sbjct: 285 SIVFSIKLSEIDMIIKEKKESPIFIIDDISSYFDSLRKESIIKYFKKRDIQLFISST 341


>gi|132249|sp|P13456|RECF_PSEPU RecName: Full=DNA replication and repair protein recF
 gi|45727|emb|CAA44365.1| recF protein [Pseudomonas putida]
          Length = 365

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 163/353 (46%), Gaps = 18/353 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L+   +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F  V+  EG  +++ +  E + + ++R   I+    R   +L + L + 
Sbjct: 61  IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGEFTIR---IDGQNARQA-QLAELLPLQ 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 116 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL   + E    E      L+L+ +     D+    L
Sbjct: 176 AAWDRELCLRSAEIDEYRRNYIKALKP-VFERTLSELVELDGLTLSYYRGWDKDRE---L 231

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLA 302
           +E  A  L   ++M      T  GP R+DL +    + A  I   S G+QK+V + I +A
Sbjct: 232 QEVLASSLLRDQQMGH----TQAGPQRADLRLRLAGNNAADIL--SRGQQKLVGMRI-IA 284

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
              L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  + 
Sbjct: 285 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELL 337


>gi|296137755|ref|YP_003644998.1| DNA replication and repair protein RecF [Tsukamurella paurometabola
           DSM 20162]
 gi|296025889|gb|ADG76659.1| DNA replication and repair protein RecF [Tsukamurella paurometabola
           DSM 20162]
          Length = 401

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 165/366 (45%), Gaps = 34/366 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++  + +      T+FVG NG GKTN++EA+++L+     R ++   + R
Sbjct: 3   VRRLRLHDFRSWDDVDIELGPGVTVFVGRNGFGKTNLIEALNYLATLGSHRVSTDQPLIR 62

Query: 67  IGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           +G+ S  +  A V   G E  A++ I +  R +++    +IN    R   +L   L+   
Sbjct: 63  VGTES-ATVLATVHNAGRELTAEVDI-VAGRANKA----RINTAPSRRPRDLLGILQSVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G    RRRFLD +     PR      D++R+++ R  LL   Y  +    
Sbjct: 117 FAPEDLSLVRGDPGGRRRFLDELAILRTPRIAAEKADYDRVLKQRTALLKTAYAAARRGG 176

Query: 181 ----SWCSSI---EAQMAELGVKINIARVEMINALSS-LIMEYVQKENFPHIKLSLTGFL 232
               S  +++   + Q+A  G ++  AR+E++ AL   L + Y      PH + +   + 
Sbjct: 177 PDAESMLATLDVWDVQLARFGAEMLAARLEVVAALQPHLTVAY--GALAPHSRAATMEYT 234

Query: 233 DGKFDQSF---------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            G FD  F           L+E     L   R  +      L+GPHR DL +   ++   
Sbjct: 235 SGLFDDEFGGDPATATVAELEEAMLAGLQRARSREIDRGVCLVGPHRDDLDLRLGNEPAK 294

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
               S GE     + + LA   L+    G  P+LLLD++ A LD  +R AL  +  +   
Sbjct: 295 -GFASHGESWSYALALRLASLELL-RAGGSDPVLLLDDVFAELDTKRRTALADVAAET-E 351

Query: 344 QIFMTG 349
           Q+ +T 
Sbjct: 352 QVIVTA 357


>gi|313122779|ref|YP_004033038.1| DNA replication and repair protein recf [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279342|gb|ADQ60061.1| DNA replication and repair protein recF [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 381

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 152/349 (43%), Gaps = 20/349 (5%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
           S FRN A L L FD    +F+G+N  GKTN+LEAI FL+  R  R ++  ++      +F
Sbjct: 9   SGFRNLALLDLEFDPHVNVFLGENAQGKTNLLEAIYFLALSRSHRTSNDREMI-----AF 63

Query: 73  FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
              FA + G      + I L     +  +   +N V    + +   HL      P    +
Sbjct: 64  GQDFASLAGRVHKRQLDIDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAILFSPEDLEL 123

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEA 188
             G    RRRF+D     I+P +      + ++++ RN  L +       D      +  
Sbjct: 124 VKGAPSLRRRFMDLEFGQINPEYLYFASQYRQMLQQRNNYLKQLARRQASDQVLLGVLTE 183

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           Q+A    ++   R   +  L+    E  +  +    +L +      K + +      +  
Sbjct: 184 QVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAK-EITAADQPAQIK 242

Query: 249 KKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLA 302
           +KL D      D   RR  T +GPHR DL      K    AH   S G+Q+ + + + LA
Sbjct: 243 QKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKN---AHLFASQGQQRTIALSLKLA 299

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             +LI   TG  PILLLD++ + LD++++ AL   +    +Q F+T TD
Sbjct: 300 EIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFIHG-QTQTFITTTD 347


>gi|91214642|ref|ZP_01251615.1| DNA replication and repair protein RecF [Psychroflexus torquis ATCC
           700755]
 gi|91187069|gb|EAS73439.1| DNA replication and repair protein RecF [Psychroflexus torquis ATCC
           700755]
          Length = 364

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 162/344 (47%), Gaps = 28/344 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L++  ++N+  L L FD++   FVG NG+GKTN+L+AI  L+ G+     SY +   
Sbjct: 3   IKKLSLINYKNFEQLTLEFDSKINCFVGKNGIGKTNVLDAIYHLAFGK-----SYFNPVT 57

Query: 67  IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             +      F  +EG  + G  +  I    +  +  + ++ N    +  ++++ H+    
Sbjct: 58  SQNIKHEEEFFMLEGEFLNGEKEERIITSFKRGQG-KLIKRNG---KEYEKISDHIGTIP 113

Query: 125 LV---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEG 176
           LV   P+  D I  G S  RR+F+D ++   D  +   ++ + +++  RN LL       
Sbjct: 114 LVIISPTDRDLILEG-SETRRKFMDGVIAQGDKLYLNTLLKYNKIVSQRNALLKYFAVNR 172

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
            FD +     + Q+ E G  I   R + I     ++ +  Q+ +     +SLT     +F
Sbjct: 173 TFDETSLEVYDDQIIEFGEIIFEKRQQFIKEFKPILKKRYQEISNSREDISLT--YKSQF 230

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           +       E + + L  G K D   + +  G H+ DLI      ++    GS G+QK  L
Sbjct: 231 NNG-----ESFKEVLKFGLKTDLQRQFSNFGTHKDDLIFKIKSHSVK-KFGSQGQQKSYL 284

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
           + +  A    + +  G  PILLLD+I   LDED+ + + ++VTD
Sbjct: 285 IALKFAQYDFLKSHYGVKPILLLDDIFDKLDEDRVSKIVKMVTD 328


>gi|213961968|ref|ZP_03390233.1| RecF protein [Capnocytophaga sputigena Capno]
 gi|213955321|gb|EEB66638.1| RecF protein [Capnocytophaga sputigena Capno]
          Length = 360

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 158/361 (43%), Gaps = 42/361 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++  ++N  S    F      FVGDNGVGKTN+L+AI  L   + +   S     R
Sbjct: 3   LKQISVVNYKNIPSQTYAFSPTINCFVGDNGVGKTNLLDAIYHLGMAKSYFTTSAVQNVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI---------RVVDELN 117
            G       F  +EG         + ETR+++ V  L+     +         R+ D + 
Sbjct: 63  HGEE-----FYLIEG-------QFQNETREEQIVCSLKKGQKKVMKHNGKAYERLADHIG 110

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-- 175
           K+  +       D I  G S  RR+FLD ++   D  +   ++ + R++  RN LL +  
Sbjct: 111 KYPMVIISPSDRDLIVEG-SETRRKFLDSVISQTDRAYLELLLRYNRILLQRNTLLKQMA 169

Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI---KLSLTG 230
             G F     S  + Q+A LG  +   R   +     +       E + +I   K  +  
Sbjct: 170 ENGVFSVETLSIYDEQLAPLGQHLYEKRRAFMEEFLPVF-----SEQYAYISGGKERVNL 224

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             + +  QS      + A  L +  + D  ++ T  G H+ DL+ +  +      +GS G
Sbjct: 225 QYESQLHQS------DLATLLRENAERDRSAQYTTSGIHKDDLLFE-IEGFPMKKYGSQG 277

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTG 349
           +QK  L+ + L+  +++    G  PI+LLD+I   LD+ +   L ++VT     Q+F+T 
Sbjct: 278 QQKSFLIALKLSQFKILQQELGITPIVLLDDIFDKLDDTRVTQLVQLVTQKHFGQLFITD 337

Query: 350 T 350
           T
Sbjct: 338 T 338


>gi|228473756|ref|ZP_04058501.1| RecF protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228274777|gb|EEK13600.1| RecF protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 359

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 161/361 (44%), Gaps = 38/361 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  F+N  S    F       +GDNGVGKTN L+AI  L   + +  +S     R
Sbjct: 3   LKRLYILNFKNIESRDFSFSPSLNCLIGDNGVGKTNSLDAIYHLGMTKSYFSSSTLMNIR 62

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL---R 121
           +G   +     F + EG E     S+K   +     + L+ N    ++ ++L  H+    
Sbjct: 63  LGEDFYLIEGNFEK-EGREETVVCSVKKGQK-----KILKRNG---KLYEKLADHIGAFP 113

Query: 122 ISWLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----G 176
           I  + PS  D I  G S  RR+FLD ++  + P +   ++ + +++  RN LL       
Sbjct: 114 IVIISPSDRDLIHEG-SEARRKFLDGLLSQLYPSYLDTLLRYNKVLAQRNTLLKSFHERQ 172

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
           Y D       + Q++  G KI   R+  + +   +      +E + H+         GK 
Sbjct: 173 YLDPDTLDIYDDQLSLYGNKIFQVRLAFLESFLPIF-----QEQYTHLS-------QGKE 220

Query: 237 DQSFCA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           + S       L +++   L +    DS ++ T IG H+ DL++D  +  +     S G+Q
Sbjct: 221 EVSIRYESRLLGQDFKNLLKESFPQDSAAQYTTIGIHKDDLLLD-INGQLVKKFASQGQQ 279

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD 351
           K  L+ + LA    +   T   PILLLD+I   LD  +   L  +VT     Q+F++ TD
Sbjct: 280 KSFLIALKLAQFHCLYKQTNTTPILLLDDIFDKLDSKRVAQLISLVTRPPFGQVFLSDTD 339

Query: 352 K 352
           K
Sbjct: 340 K 340


>gi|284028003|ref|YP_003377934.1| DNA replication and repair protein RecF [Kribbella flavida DSM
           17836]
 gi|283807296|gb|ADB29135.1| DNA replication and repair protein RecF [Kribbella flavida DSM
           17836]
          Length = 379

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 162/366 (44%), Gaps = 39/366 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L + +FR+Y    +      T FVG NG GKTN++EAI + +     R A+ A + R
Sbjct: 3   VTALGLLDFRSYQQAEVELTPGVTAFVGPNGHGKTNLVEAIHYTATLGSHRVATDAPLVR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+P +   T  R +      D+ I+LE    ++ R  +IN   +    E+   LR    
Sbjct: 63  AGAPRAIVRTEVRGQYER---DVVIELEINPGKANRA-RINRSPVPRPREVLGLLRTVLF 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---------TEG 176
            P    +  G   ERRRFLD ++    PR      D++R+++ RN LL           G
Sbjct: 119 APEDLALVKGDPSERRRFLDELLTLRTPRMAGVRQDYDRVLKQRNSLLRSASMARRQNRG 178

Query: 177 YFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
                   ++E   A +A  G ++   R+E++ AL  L+        +  +     G  D
Sbjct: 179 AAAEGQLRTLEIWDANLARTGAELLATRLELLEALRPLV-----AGGYDAVA---RGKGD 230

Query: 234 GKFD-------QSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKAI 282
            + +       +     +E+ A+ L      ++ D + R  +L+GPHR D+++   D   
Sbjct: 231 ARLEYKSSVRLEPGVTSREQLAEVLLATVHEKRADELDRGVSLVGPHRDDVLLGLGDLPA 290

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              + S GE     + + LA   L+    G  P+L+LD++ A LD  +R+ L  +V    
Sbjct: 291 K-GYASHGESWSFALALRLASYELL-RADGGEPVLILDDVFAELDTQRRDRLAELVAP-A 347

Query: 343 SQIFMT 348
            Q+ +T
Sbjct: 348 EQVLVT 353


>gi|188995431|ref|YP_001929683.1| putative DNA replication and repair protein RecF [Porphyromonas
           gingivalis ATCC 33277]
 gi|226737817|sp|B2RL41|RECF_PORG3 RecName: Full=DNA replication and repair protein recF
 gi|188595111|dbj|BAG34086.1| putative DNA replication and repair protein RecF [Porphyromonas
           gingivalis ATCC 33277]
          Length = 364

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 164/384 (42%), Gaps = 44/384 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L+I  F++ A+    F  +    VG+NG+GKTN+L+A+ FLS  R         V R
Sbjct: 3   IEELHIVNFKSIAAADCRFSPKVNCLVGNNGMGKTNLLDALHFLSFCRSHLSVPDNMVVR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +      R E  +G   I + L  R  +  + L+ N      + +   H  +  +
Sbjct: 63  HGEEMALLQGLYRDESGDG---IELLLSIRPGKH-KVLRRNKKEYERLSDHIGHFPLVIV 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   ++  G S ERRRF+D+ +   DPR+   +I + R ++ RN +L +   D +    
Sbjct: 119 SPQDYQLILGGSDERRRFMDQQLCQQDPRYLSALIQYNRHLQQRNTMLKQDRHDDALMDV 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +E QM     +I   R   I     +  +     +    K+SL+                
Sbjct: 179 LELQMGSYAAEIYNKRSRFIEDFLPVFNDLYSDISGSAEKVSLS---------------- 222

Query: 246 EYAKKLFDGRKMDSMSRRTL----------IGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            Y   L DG  ++ + RR+            G H+ +L +      +    GS G+ K  
Sbjct: 223 -YRSHLADGIPLEELLRRSRPKDYLLGFSSCGVHKDELEM-LLGGVLIRKIGSEGQNKTF 280

Query: 296 LVGIFLA---HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD 351
           L+ + LA   H +L  + T   PILLLD+I   LD  +   + R+V   G  QIF+T T+
Sbjct: 281 LISMKLAQFRHQQLHGDET---PILLLDDIFDKLDATRVERIIRLVGGNGFGQIFITDTN 337

Query: 352 KSVFD----SLNETAKFMRISNHQ 371
           +   D    S +E  +   I N Q
Sbjct: 338 RKNLDEIIASWSEDYRLFEIENGQ 361


>gi|332288917|ref|YP_004419769.1| recombination protein F [Gallibacterium anatis UMN179]
 gi|330431813|gb|AEC16872.1| recombination protein F [Gallibacterium anatis UMN179]
          Length = 359

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 156/347 (44%), Gaps = 28/347 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LNI  FRN  ++ L  ++     +G NG GKT++LEAI FL  GR F+ +    + +   
Sbjct: 6   LNIQHFRNLKAVNLALNSGFNFLIGHNGSGKTSLLEAIYFLGHGRSFKSSVVNRIIQYEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              F+ FA+VE ++    + ++   + + ++R   IN      + +L   L +  + P  
Sbjct: 66  AE-FTLFAKVEELQQSWALGLQKTRQGENTIR---INGKDGHKISDLAHLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD  +F ++P+         RL++ RN  L +   D +     + Q
Sbjct: 122 LTLINGGPSYRRAFLDWGLFHLEPQFHHHWSAMNRLLKQRNAALQQ-VDDYALLKIWDQQ 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           + +L  +I+  R    + L + I +   +   P +++ +  F  G   +S      +YA 
Sbjct: 181 LCQLAQQISEWRQRYADELKTEITQTC-RLFLPEVEIEVH-FYQGWNKES------DYAD 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-------STGEQKVVLVGIFLA 302
            L +  + D     T+ GP R+D            A+G       S G+ K+++  + LA
Sbjct: 233 ILIENFQRDKSVGYTMSGPQRADFKFR--------ANGMPAEDILSRGQLKLLMCALRLA 284

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
               +        I L+D+ ++ LD +KR  L + + +  SQ+ +T 
Sbjct: 285 QGEHLMRQQQRHCIFLIDDFASELDPNKRALLAQRLKESQSQVIITA 331


>gi|325499507|gb|EGC97366.1| recombination protein F [Escherichia fergusonii ECD227]
          Length = 357

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 161/364 (44%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFI-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFTLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D +   T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRLLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|13959485|sp|Q9KHU6|RECF_ACHLA RecName: Full=DNA replication and repair protein recF
 gi|8515413|gb|AAF75988.1|AF248639_7 RecF [Acholeplasma laidlawii PG-8A]
          Length = 349

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 158/347 (45%), Gaps = 29/347 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  FRN  + +++ +    I  G NGVGKT+ILE+I F +  +  R +   D+ +
Sbjct: 2   ITSIELRNFRNLENYKVLINRPLVIIQGLNGVGKTSILESIYFAATTKSHRSSVEKDMIQ 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              P     +A V+ +E      I L     R+     IN   +R + +    LR+    
Sbjct: 62  YDKP-----YASVKLIEDSKLHEIVLTPNGKRTT----INKSEVRKISDYIGQLRVVMFA 112

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCS 184
           P    +  G   ERR FLD  +  +   + R +  ++++++ RN LL +     D ++ +
Sbjct: 113 PEDLMLIKGSPSERRYFLDMELMQVSKTYLRNLNSYKKILKQRNALLKKNRNLTDYTFLN 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF--CA 242
            +  Q+ ++G++I   R + I AL+         + F  I+   T + D + +  +    
Sbjct: 173 ILGEQLYDVGIQIFDERQKFIEALN---------QKFKTIQ---TKYKDFEVEMLYEPNV 220

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA-HGSTGEQKVVLVGIFL 301
            KE + K L   +K D M   T  G H+ D  + Y  K +      S G  +++++ + L
Sbjct: 221 TKENFLKHLKTKQKQDIMYETTTAGIHKDDFKLLY--KGLNAKDSASQGTSRLIVIELKL 278

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           A    I   T    ILLLD++ + LD +++N LF        Q+F+T
Sbjct: 279 ALLEWIKEVTKTDAILLLDDVLSELDLERQN-LFMSQLSKNHQVFIT 324


>gi|152977691|ref|YP_001343320.1| recombination protein F [Actinobacillus succinogenes 130Z]
 gi|171472900|sp|A6VK88|RECF_ACTSZ RecName: Full=DNA replication and repair protein recF
 gi|150839414|gb|ABR73385.1| DNA replication and repair protein RecF [Actinobacillus
           succinogenes 130Z]
          Length = 358

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 160/371 (43%), Gaps = 20/371 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I  FRN A++ L FD      VG+NG GKT++LE+I +L  GR F+ +    +
Sbjct: 1   MAISRLIIENFRNLAAVDLEFDHGFNFLVGNNGSGKTSLLESIFYLGHGRSFKSSVSTRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P +F+   R+   E   + S+ L+ +    +  ++IN      + +L   L +  
Sbjct: 61  ITYDKP-YFTLHGRI--WEQQHEWSVGLQKQRKEGLTLVKINGEDGNKISDLAHLLPMQM 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F   P          RL++ RN  L + Y D +   
Sbjct: 118 ITPEGLTLLNGGPSYRRAFLDWGLFHHRPNFHSAWSALNRLLKQRNAALQQTY-DYTDLQ 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++++L  ++++ R +   AL   I E   +   P + + ++      F Q +    
Sbjct: 177 VWDVELSKLAHQVSLWRTDYAEALRPEI-EQTCRLFLPELDIQVS------FHQGWDK-N 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y   L +    D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 229 TDYGDLLRENFARDKHIGYTVSGPQKADFRFKANGFPVEDVL-SRGQLKLLMCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             +      + I L+D+ ++ LDE KR  L   +    SQ+F+T           E  K 
Sbjct: 288 EHLMVQKNRSCIFLIDDFASELDETKRGLLAERLRQSHSQVFVTAITA-------EQLKQ 340

Query: 365 MRISNHQALCI 375
           M+  NH+   +
Sbjct: 341 MQPENHRTFSV 351


>gi|300811994|ref|ZP_07092450.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497020|gb|EFK32086.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 381

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 153/349 (43%), Gaps = 20/349 (5%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
           S FRN A L L FD    +F+G+N  GKTN+LEAI FL+  R  R ++  ++   G   F
Sbjct: 9   SGFRNLALLDLEFDPHVNVFLGENAQGKTNLLEAIYFLALSRSHRTSNDREMIAFGQ-DF 67

Query: 73  FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
            S   RV   +   D+ I +  +     +   +N V    + +   HL      P    +
Sbjct: 68  ASLAGRVHKRQLDLDLRIVISKKG----KSAWVNRVEQARLSKYVGHLNAILFSPEDLEL 123

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEA 188
             G    RRRF+D     I+P +      + +L++ RN  L +       D      +  
Sbjct: 124 VKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQVLLGVLTE 183

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           Q+A    ++   R   +  L+    E  +  +    +L +      K + +      +  
Sbjct: 184 QVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAK-EITAADQPAQIK 242

Query: 249 KKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLA 302
           +K+ D      D   RR  T +GPHR DL      K    AH   S G+Q+ + + + LA
Sbjct: 243 QKMLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKN---AHLFASQGQQRTIALSLKLA 299

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             +LI   TG  PILLLD++ + LD++++ AL   +    +Q F+T TD
Sbjct: 300 EIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFIHG-QTQTFITTTD 347


>gi|332345691|gb|AEE59025.1| DNA replication and repair protein RecF [Escherichia coli UMNK88]
          Length = 357

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 161/362 (44%), Gaps = 17/362 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEA 188
             + +G    RR FLD   F  +P       + +RL++ RN  L +  +++       + 
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTHYEQ--LRPWDK 179

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      EYA
Sbjct: 180 ELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------EYA 231

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           + L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    ++
Sbjct: 232 EVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367
             +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K   +
Sbjct: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350

Query: 368 SN 369
             
Sbjct: 351 EK 352


>gi|24114990|ref|NP_709500.1| recombination protein F [Shigella flexneri 2a str. 301]
 gi|30065008|ref|NP_839179.1| recombination protein F [Shigella flexneri 2a str. 2457T]
 gi|51316304|sp|Q7BZ80|RECF_SHIFL RecName: Full=DNA replication and repair protein recF
 gi|24054242|gb|AAN45207.1| Rec protein [Shigella flexneri 2a str. 301]
 gi|30043269|gb|AAP18990.1| Rec protein [Shigella flexneri 2a str. 2457T]
 gi|281603073|gb|ADA76057.1| DNA replication and repair protein recF [Shigella flexneri 2002017]
 gi|313647708|gb|EFS12156.1| DNA replication and repair protein recF [Shigella flexneri 2a str.
           2457T]
 gi|332750521|gb|EGJ80930.1| DNA replication and repair protein recF [Shigella flexneri K-671]
 gi|332750692|gb|EGJ81100.1| DNA replication and repair protein recF [Shigella flexneri 4343-70]
 gi|332751786|gb|EGJ82184.1| DNA replication and repair protein recF [Shigella flexneri 2747-71]
 gi|332764071|gb|EGJ94308.1| DNA replication/repair protein RecF [Shigella flexneri 2930-71]
 gi|332997495|gb|EGK17111.1| DNA replication and repair protein recF [Shigella flexneri K-218]
 gi|333013217|gb|EGK32590.1| DNA replication and repair protein recF [Shigella flexneri K-304]
          Length = 357

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++  M+   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAA-DMDDTCKQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|260495358|ref|ZP_05815485.1| recombination protein F [Fusobacterium sp. 3_1_33]
 gi|260197136|gb|EEW94656.1| recombination protein F [Fusobacterium sp. 3_1_33]
          Length = 369

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 164/351 (46%), Gaps = 15/351 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I +LN   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++ +
Sbjct: 6   ITYLN---FRNLENSSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRISWL 125
                F S+   +   + +A+  I +  ++   + +    N   I   D   K + I   
Sbjct: 63  YNFEEFISS---ISYQDYVANNKISVRFKNITGAKKEFFFNKKRISQTDFYGK-INIIAY 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   + 
Sbjct: 119 IPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFAI 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCAL 243
            E +  +    I   R+E + +LS ++ ++Y +  N    + L     LD     +   +
Sbjct: 179 YEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTAKVTVEMI 238

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           +E   K++   +  +   + +L+GPH+ D   +++  +  I+    S GE+K ++  + L
Sbjct: 239 QENLKKEISQKKYQEDKYKFSLVGPHKDDYKFLLNGYEAKIS---ASQGEKKSIIFSLKL 295

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   +I       P++++D+I+++ DED+R ++         Q+ ++ TDK
Sbjct: 296 SEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346


>gi|110807610|ref|YP_691130.1| recombination protein F [Shigella flexneri 5 str. 8401]
 gi|123342286|sp|Q0SYP0|RECF_SHIF8 RecName: Full=DNA replication and repair protein recF
 gi|110617158|gb|ABF05825.1| ssDNA and dsDNA binding, ATP binding [Shigella flexneri 5 str.
           8401]
          Length = 357

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGCVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++  M+   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAA-DMDDTCKQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|34763294|ref|ZP_00144252.1| DNA replication and repair protein recF [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887042|gb|EAA24155.1| DNA replication and repair protein recF [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 369

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 162/352 (46%), Gaps = 17/352 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I +LN   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++ +
Sbjct: 6   ITYLN---FRNLENNSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRISWL 125
                F S+   +   + +A+  I +  ++   + +    N   I   D   K + I   
Sbjct: 63  YNFEEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGK-VNIIAY 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   + 
Sbjct: 119 IPEDIILINGSPRHRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFAI 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCAL 243
            E +  +    I   R+E + +LS ++ ++Y +  N    + L     LD     +   +
Sbjct: 179 YEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKITVEMI 238

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD---LIVDYCDKAITIAHGSTGEQKVVLVGIF 300
           +E   K++   +  +   + +L+GPH+ D   L+  Y  K       S GE+K ++  + 
Sbjct: 239 QESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGYEAKV----SASQGEKKSIIFSLK 294

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           L+   +I       P++++D+I+++ DED+R ++         Q+ ++ TDK
Sbjct: 295 LSEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346


>gi|50953929|ref|YP_061217.1| recombination protein F [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648822|sp|Q6AHN3|RECF_LEIXX RecName: Full=DNA replication and repair protein recF
 gi|50950411|gb|AAT88112.1| DNA replication and repair protein RecF [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 385

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 179/370 (48%), Gaps = 34/370 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++++FRNY +  + F+A   +FVG NG GKTN++E++ +LS     R +S   +
Sbjct: 1   MRVTHLSLTDFRNYGTAEVHFEAGANLFVGRNGQGKTNLVESLGYLSALGSHRVSSDQAM 60

Query: 65  TRIGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R G+       AR+  E  E L ++ +     +  +    Q+N   I+   EL ++   
Sbjct: 61  IRQGA-ELAVVRARIQHEARELLVEVQL-----NRGAANRAQVNRAAIK-PRELPRYFSS 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFD 179
               P    +  G    RRRFLD+++   +PR    + ++ER+++ RN LL       F 
Sbjct: 114 VLFAPEDLALVRGEPGVRRRFLDQLLIQRNPRLSAVIAEYERVLKQRNTLLKSARASRFR 173

Query: 180 SSWCSSIEA---QMAELGVKINIARVEMINALSS-LIMEY---VQKENFPHI--KLSLTG 230
                +++    ++  LG ++  AR++++  LS+ L+  Y      ++ P +  +L+++G
Sbjct: 174 EDQLGTLDIWDDRLLTLGAELINARLDLMARLSNPLVAAYRSVAGDDHHPRLLPQLTISG 233

Query: 231 -FLDGKFDQSFCALKEEYA------KKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAI 282
             ++ + D S   +   +       ++   G +   + R  TL+GPHR D++ +  +   
Sbjct: 234 AHVEDEDDDSVADMTSAFGDTTDVFRQALAGVRWKELERGLTLVGPHRDDVLFE-LNGLP 292

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLI--SNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
              + S GE     + + LA A L+   + TG  P+L+LD++ A LD  +R  L   V  
Sbjct: 293 AKGYASHGESWSFALALKLASAELLRRESVTG-DPVLILDDVFAELDWARRRMLATTVAG 351

Query: 341 IGSQIFMTGT 350
              Q+ +T  
Sbjct: 352 Y-EQVLITAA 360


>gi|15839375|ref|NP_334412.1| recombination protein F [Mycobacterium tuberculosis CDC1551]
 gi|148821194|ref|YP_001285948.1| recombination protein F [Mycobacterium tuberculosis F11]
 gi|215405987|ref|ZP_03418168.1| recombination protein F [Mycobacterium tuberculosis 02_1987]
 gi|215413857|ref|ZP_03422522.1| recombination protein F [Mycobacterium tuberculosis 94_M4241A]
 gi|215425189|ref|ZP_03423108.1| recombination protein F [Mycobacterium tuberculosis T92]
 gi|215432908|ref|ZP_03430827.1| recombination protein F [Mycobacterium tuberculosis EAS054]
 gi|215448276|ref|ZP_03435028.1| recombination protein F [Mycobacterium tuberculosis T85]
 gi|218755719|ref|ZP_03534515.1| recombination protein F [Mycobacterium tuberculosis GM 1503]
 gi|219555774|ref|ZP_03534850.1| recombination protein F [Mycobacterium tuberculosis T17]
 gi|253796918|ref|YP_003029919.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           KZN 1435]
 gi|254233408|ref|ZP_04926734.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis C]
 gi|254366463|ref|ZP_04982507.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis str. Haarlem]
 gi|254548931|ref|ZP_05139378.1| recombination protein F [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260198987|ref|ZP_05766478.1| recombination protein F [Mycobacterium tuberculosis T46]
 gi|260203140|ref|ZP_05770631.1| recombination protein F [Mycobacterium tuberculosis K85]
 gi|289441370|ref|ZP_06431114.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           T46]
 gi|289552253|ref|ZP_06441463.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           KZN 605]
 gi|289567885|ref|ZP_06448112.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           T17]
 gi|289572579|ref|ZP_06452806.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           K85]
 gi|289747773|ref|ZP_06507151.1| recombination protein F [Mycobacterium tuberculosis 02_1987]
 gi|289748465|ref|ZP_06507843.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           T92]
 gi|289756062|ref|ZP_06515440.1| recombination protein F [Mycobacterium tuberculosis EAS054]
 gi|289760100|ref|ZP_06519478.1| recombination protein F [Mycobacterium tuberculosis T85]
 gi|289764118|ref|ZP_06523496.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis GM 1503]
 gi|294995611|ref|ZP_06801302.1| recombination protein F [Mycobacterium tuberculosis 210]
 gi|297632471|ref|ZP_06950251.1| recombination protein F [Mycobacterium tuberculosis KZN 4207]
 gi|297729440|ref|ZP_06958558.1| recombination protein F [Mycobacterium tuberculosis KZN R506]
 gi|298527401|ref|ZP_07014810.1| recF protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306778821|ref|ZP_07417158.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu002]
 gi|306782609|ref|ZP_07420931.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu003]
 gi|306786977|ref|ZP_07425299.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu004]
 gi|306791533|ref|ZP_07429835.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu005]
 gi|306795597|ref|ZP_07433899.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu006]
 gi|306801572|ref|ZP_07438240.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu008]
 gi|306805781|ref|ZP_07442449.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu007]
 gi|306970178|ref|ZP_07482839.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu009]
 gi|313656769|ref|ZP_07813649.1| recombination protein F [Mycobacterium tuberculosis KZN V2475]
 gi|13879044|gb|AAK44226.1| recF protein [Mycobacterium tuberculosis CDC1551]
 gi|124603201|gb|EAY61476.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis C]
 gi|134151975|gb|EBA44020.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis str. Haarlem]
 gi|148719721|gb|ABR04346.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis F11]
 gi|253318421|gb|ACT23024.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           KZN 1435]
 gi|289414289|gb|EFD11529.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           T46]
 gi|289436885|gb|EFD19378.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           KZN 605]
 gi|289537010|gb|EFD41588.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           K85]
 gi|289541638|gb|EFD45287.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           T17]
 gi|289688301|gb|EFD55789.1| recombination protein F [Mycobacterium tuberculosis 02_1987]
 gi|289689052|gb|EFD56481.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           T92]
 gi|289696649|gb|EFD64078.1| recombination protein F [Mycobacterium tuberculosis EAS054]
 gi|289711624|gb|EFD75640.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis GM 1503]
 gi|289715664|gb|EFD79676.1| recombination protein F [Mycobacterium tuberculosis T85]
 gi|298497195|gb|EFI32489.1| recF protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308328158|gb|EFP17009.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu002]
 gi|308332532|gb|EFP21383.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu003]
 gi|308336275|gb|EFP25126.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu004]
 gi|308339880|gb|EFP28731.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu005]
 gi|308343893|gb|EFP32744.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu006]
 gi|308347677|gb|EFP36528.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu007]
 gi|308351595|gb|EFP40446.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu008]
 gi|308352302|gb|EFP41153.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu009]
 gi|326905762|gb|EGE52695.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           W-148]
 gi|328456709|gb|AEB02132.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           KZN 4207]
          Length = 385

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 30/363 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A + L      T+FVG NG GKTN++EA+ + +     R ++   + R
Sbjct: 3   VRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +G+  +  ST    +G E   D+ I         V   ++N   +R   ++   LR    
Sbjct: 63  VGTDRAVISTIVVNDGRECAVDLEIATG-----RVNKARLNRSSVRSTRDVVGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   +RRR+LD +     P       ++ER++R R  LL            
Sbjct: 118 APEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231
           G FD+      ++++AE G ++  AR++++N L+  + +  Q    P  + +  G+    
Sbjct: 178 GVFDT--LEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLA-PESRSASIGYRASM 234

Query: 232 -LDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHG 287
            + G  +QS    +            + D+   R   L+GPHR DLI+   D+       
Sbjct: 235 DVTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFA 293

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE   + V + LA  +L+    G  P+LLLD++ A LD  +R AL     +   Q+ +
Sbjct: 294 SHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLV 351

Query: 348 TGT 350
           T  
Sbjct: 352 TAA 354


>gi|89891571|ref|ZP_01203075.1| DNA replication and repair protein RecF [Flavobacteria bacterium
           BBFL7]
 gi|89516118|gb|EAS18781.1| DNA  replication and repair protein RecF [Flavobacteria bacterium
           BBFL7]
          Length = 359

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 173/362 (47%), Gaps = 40/362 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + + FL++  +++++S     D +   FVG+NGVGKTN+L+AI  L+    F ++ +  +
Sbjct: 1   MHLDFLSLVNYKSFSSAEFELDEKINCFVGNNGVGKTNVLDAIYHLA----FAKSYFNPI 56

Query: 65  TRIG---SPSFF---STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           T         FF     F + E  E +  +S K   +     R ++ N    +  ++L++
Sbjct: 57  TVQNIKHDQDFFVINGNFQKKENQEKVV-VSAKRGHK-----RVVKRNG---KAYEKLSE 107

Query: 119 HLRISWLV---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL- 173
           H+ +  LV   P+  D I  G S  RRRF+D ++   +  +  +++ + +L++ RN LL 
Sbjct: 108 HIGLIPLVIISPADRDLIIEG-SDTRRRFMDSVISLDNQDYLNQLVTYNKLIQQRNALLK 166

Query: 174 ---TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                  FD +     + Q+  L   I+  RV+ + + + +  +Y     + +I  S   
Sbjct: 167 YFQANRTFDRAGLEVYDEQLIVLATFIHKTRVQFLESFTPIFKKY-----YAYISQSEED 221

Query: 231 F-LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
             +  K D +  A KE +   L    + D   + +  G H+ DL       A+   +GS 
Sbjct: 222 VNIYYKSDLNDTAAKEVFESAL----QKDMQLQYSSAGTHKDDLYFLLNGHAVK-KYGSQ 276

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMT 348
           G+QK  L  + LA    I + +G  PILLLD+I   LDE++ + +  +V D    Q+F++
Sbjct: 277 GQQKSFLTALKLAQFEFIKSQSGTVPILLLDDIFDKLDENRVSQIINMVNDEQFGQLFIS 336

Query: 349 GT 350
            T
Sbjct: 337 DT 338


>gi|256021282|ref|ZP_05435147.1| recombination protein F [Shigella sp. D9]
 gi|331670544|ref|ZP_08371383.1| DNA replication and repair protein RecF [Escherichia coli TA271]
 gi|332282513|ref|ZP_08394926.1| gap repair protein [Shigella sp. D9]
 gi|331062606|gb|EGI34526.1| DNA replication and repair protein RecF [Escherichia coli TA271]
 gi|332104865|gb|EGJ08211.1| gap repair protein [Shigella sp. D9]
          Length = 357

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 161/364 (44%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ +++   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMVDTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|320174826|gb|EFW49949.1| DNA recombination and repair protein RecF [Shigella dysenteriae CDC
           74-1112]
          Length = 357

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|258545194|ref|ZP_05705428.1| DNA replication and repair protein RecF [Cardiobacterium hominis
           ATCC 15826]
 gi|258519546|gb|EEV88405.1| DNA replication and repair protein RecF [Cardiobacterium hominis
           ATCC 15826]
          Length = 359

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 154/348 (44%), Gaps = 19/348 (5%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ L +   RN A+  L    + T+  G NG GKT +LEAI  L  G+ FR      + 
Sbjct: 3   RLRQLRLDNHRNLATTTLELHPRCTLISGKNGSGKTALLEAIYLLGRGKSFRENQTRHLI 62

Query: 66  RIGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               P +    AR+E  G E L  + I+   R+ R    L+++   ++ +  L     + 
Sbjct: 63  AHDQP-YLRLIARIEKNGEEHL--LGIEKSAREHR----LRLDGQNLKNLAALAALTPVQ 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            L              RRR+LD  ++  DP        +   ++ RN  L + +  +   
Sbjct: 116 ILNSDNFAHIDQGPEHRRRYLDYGLYYHDPAFLPAWQRYNYALKNRNAALRQNWRAAD-L 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           +     + E G +I+  R   +  L   +  Y       H +L     +   + + + A 
Sbjct: 175 APWNHILGETGTQIDTLRRAYLEKLEDTLNTY-------HAELGGYERIHIHYQRGWPA- 226

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +  A  L    + D++ + T  G HR+DL   + D      H S G+QK ++  + LA 
Sbjct: 227 GQPLAALLDANNERDALLKHTRDGIHRADLRY-HADGRDIAHHYSRGQQKTLICALILAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            RLI+  +G API+L+D+I+A LD  ++  L + + D  SQ+++T  D
Sbjct: 286 TRLITADSGTAPIILIDDIAAELDRARQEKLLQFLADSDSQLYITHID 333


>gi|161936342|ref|YP_128267.2| recombination protein F [Photobacterium profundum SS9]
          Length = 359

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 167/363 (46%), Gaps = 18/363 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN  +  L    +    VG NG GKT++LEAI +L  GR FR    + V R   
Sbjct: 6   LIVKDFRNIEACDLALSPRFNFLVGANGSGKTSVLEAIHYLGHGRSFRSHLTSRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              F    RV     L ++ + +  + D +   ++++    + + +L + L +  + P  
Sbjct: 66  QELF-IHGRVLTNNQL-ELPLGINKKRDGTTE-VKVSGESGQKLSQLAQVLPLQLITPEG 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187
             +  G    RR F+D  VF I+P+        +RL + RN LL     Y + S+    +
Sbjct: 123 FELLIGGPKYRRSFIDWGVFHIEPKFYNAWSRIKRLTKQRNALLKTARSYRELSYW---D 179

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            ++A L  +I++ R E + A+     E  Q    P  ++ L+ +   + +  +     E 
Sbjct: 180 QELAVLAEEISVWRDEYLIAVKQKAAEICQG-FLPEYEIQLSYYRGWEKETPYA----EL 234

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
            K+ F+    D     T+ GPH++DL +      +     S G+ K+++  + LA    +
Sbjct: 235 LKRNFE---RDCQLGYTVNGPHKADLRMKVSGTPVEDVL-SRGQLKLMVCALRLAQGLHL 290

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366
           +  TG   I L+D+ ++ LD  +R  L + + +  +Q+F++  +++ + D  +E  K   
Sbjct: 291 TEATGKQCIYLIDDFASELDSHRRALLAQRLKETNAQVFISAISNEQIADMHDENGKMFH 350

Query: 367 ISN 369
           + +
Sbjct: 351 VEH 353


>gi|110644043|ref|YP_671773.1| recombination protein F [Escherichia coli 536]
 gi|191170384|ref|ZP_03031937.1| DNA replication and repair protein RecF [Escherichia coli F11]
 gi|300983651|ref|ZP_07176692.1| recombination protein F [Escherichia coli MS 200-1]
 gi|123343429|sp|Q0TB07|RECF_ECOL5 RecName: Full=DNA replication and repair protein recF
 gi|110345635|gb|ABG71872.1| DNA replication and repair protein RecF [Escherichia coli 536]
 gi|190909192|gb|EDV68778.1| DNA replication and repair protein RecF [Escherichia coli F11]
 gi|300306874|gb|EFJ61394.1| recombination protein F [Escherichia coli MS 200-1]
 gi|324012739|gb|EGB81958.1| recombination protein F [Escherichia coli MS 60-1]
          Length = 357

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSGGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|119471660|ref|ZP_01614045.1| gap repair protein with nucleoside triP hydrolase domain, part of
           RecFOR complex that targets RecA to ssDNA-dsDNA junction
           [Alteromonadales bacterium TW-7]
 gi|119445439|gb|EAW26726.1| gap repair protein with nucleoside triP hydrolase domain, part of
           RecFOR complex that targets RecA to ssDNA-dsDNA junction
           [Alteromonadales bacterium TW-7]
          Length = 364

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 152/344 (44%), Gaps = 19/344 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRN  +L L       I  G+NG GKT++LEAI +LS G+ FR   +  +
Sbjct: 1   MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTPKHKSI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
                  F      + G + + D+SI +     R     L+I     R + EL + + + 
Sbjct: 61  IAHQQEQFV-----IHGRKMVHDLSIPIGISKTRLGETNLKIQGKASRKISELAQLMPVQ 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDS 180
            + P    +F G   ERR+FLD  +F ++         F ++++ RN LL    + YFD 
Sbjct: 116 IITPESYSLFFGGPKERRKFLDLGLFHVEHEFFYLWQSFNKVLKQRNALLKSKPKNYFDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + +   L  +IN  R+  I+       + +  E      L+L   L+  F+  +
Sbjct: 176 --IKFWDKEFVRLAEEINKLRLAYISRFKQQFFDKMCSE------LTLIRDLEMTFNAGW 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E  A  L    + D+    T  GPH++D        ++     S G+ K++L  + 
Sbjct: 228 KE-NESLADALEQNFERDARQGFTSKGPHKADFSFSVAGNSVENTF-SRGQLKLLLYALK 285

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
           +    LI + T    ILL+D++ + L ED +  + ++++   SQ
Sbjct: 286 VTQNSLIESETDKQSILLIDDLPSELGEDTKEKVGQLLSHCSSQ 329


>gi|85711019|ref|ZP_01042080.1| Recombinational DNA repair ATPase [Idiomarina baltica OS145]
 gi|85695423|gb|EAQ33360.1| Recombinational DNA repair ATPase [Idiomarina baltica OS145]
          Length = 362

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 164/358 (45%), Gaps = 31/358 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L    FRN+            +  G NG GKT+++EAI  L  GR FR   Y  +
Sbjct: 1   MRLNALKAINFRNFKRFDFEPSPYANLIGGLNGSGKTSLIEAIYLLGFGRSFRPGGYKQL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               S S F+ F   E M    ++  I L    +  V+ L++N   +  + E+ + + + 
Sbjct: 61  IN-SSESDFTVFC--EAMSDRDEVFKIGLRRTSEGEVQ-LRLNGETVHKLSEIARFIPVQ 116

Query: 124 WLVP-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYF--D 179
              P S++ I  G S+ RR+F+D  VF ++       + + + ++ RN LL ++G    D
Sbjct: 117 LFTPESVELILGGPSL-RRQFMDWGVFHVEHTFYELWVAYTKSLKQRNFLLRSKGDVRQD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PHIKLSLTGFLDGKFD 237
           S W     AQ+A LG +I   R+  I  + + I    +   F  P +KL + G   G +D
Sbjct: 176 SFW----RAQLARLGEEIIQLRIRYIQEIENFI---TKSATFFLPDVKLEV-GLKQG-WD 226

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVV 295
           QS        A  L    + D     T IGPH++D  L VD  D  + +   S G+ K++
Sbjct: 227 QSLS-----LADALDKHTERDRRYGHTSIGPHKADIKLTVDGIDAKLVL---SRGQLKLL 278

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           +  + LA A   +     + I L+D+I++ LDE  +      +  +  Q F+T  D S
Sbjct: 279 VASLKLAQAAHYNEKKDSSCIFLVDDITSELDEANQKKFITALEGLKCQSFITAIDSS 336


>gi|172039683|ref|YP_001799397.1| recombination protein F [Corynebacterium urealyticum DSM 7109]
 gi|171850987|emb|CAQ03963.1| DNA replication and repair protein RecF [Corynebacterium
           urealyticum DSM 7109]
          Length = 472

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 174/400 (43%), Gaps = 53/400 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++  L L  D   T+F G NG GKTNI+EA+ +L+     R  + + + R
Sbjct: 3   VRSLELHDFRSWRELSLQLDPGVTVFSGPNGHGKTNIVEALGYLAHLGSHRVNTDSALVR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +  S  A     E  A I+I    R   S R   IN   +    EL   +R +  
Sbjct: 63  EGQQIARVSATAVNHNRELTAHIAI----RGHGSNRA-HINRTQLATTSELLGIVRTTLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178
            P    +  G   +RR+FLD ++ A  PR      D+++ +R RN LL    +       
Sbjct: 118 SPEDLALVRGEPEQRRKFLDEIMVARYPRLAAVKADYDKSLRQRNALLRNNAYALRIAPE 177

Query: 179 -DSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSL 228
            D+   S++      +AQ+A LG +I  ARV++ + L+  + +    +  E+ P   ++ 
Sbjct: 178 NDAERLSALATLDVWDAQLAALGGQIMSARVQIAHDLAPHVAQTYARLAPESRP-AHMAY 236

Query: 229 TGFLDGKFDQSFCALKEE------------YAKKLFDGRKMDSMSRR---------TLIG 267
           T  +D    Q    L E              + ++ +   + + +R+         TLIG
Sbjct: 237 TSTVDADLAQVGVLLGEAELERDPAAELALLSPEVAEATLLQAYARKRTQEVDRGTTLIG 296

Query: 268 PHRSDLIVDYCDKAIT--IAHGSTGEQKVVL-VGIFLAHARLISNTTGFAPILLLDEISA 324
           PHR DL++    +      +HG +    + L +G F      +    G  P+++LD++ A
Sbjct: 297 PHRDDLVLMLGTQPAKGFASHGESWSFALALRLGAF-----FMQREDGVEPVVILDDVFA 351

Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            LD  +R  L  ++T+    +      + +   L + A F
Sbjct: 352 ELDSSRRQQLVGLLTEAEQVLITAAVGEDIPAELRDIATF 391


>gi|313205904|ref|YP_004045081.1| DNA replication and repair protein recf [Riemerella anatipestifer
           DSM 15868]
 gi|312445220|gb|ADQ81575.1| DNA replication and repair protein RecF [Riemerella anatipestifer
           DSM 15868]
          Length = 360

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 170/375 (45%), Gaps = 30/375 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L ++ F+N+      F ++   FVG+NGVGKTNIL+A+ +LS G+ F   S  DV  
Sbjct: 3   IKKLYLTNFKNHQERVFDFSSEINSFVGNNGVGKTNILDALHYLSVGKSFLGNS--DVNN 60

Query: 67  I-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDELNKHLRISW 124
           I     FF+  A V+  E    + I ++++D +  + ++ ND    R+ D +   L    
Sbjct: 61  ILTGEDFFTLEAVVDDGEKETILKI-IQSKDAK--KLVKKNDKSYARLSDHIG-FLPSVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180
           + P    + S     RRRFLD M+  +D  +   ++ +++ ++ RN LL       YFD 
Sbjct: 117 ISPYDANLISDSGESRRRFLDAMISQVDAEYLHSIMQYQKALKQRNALLKSFAKNRYFDK 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 +  + +    I   R   I  L    + +           ++      + D  +
Sbjct: 177 DSLEIYDEPLCQYAGVIFEKRSLFITQLLPTFLHF----------YNMISNGKEEVDIVY 226

Query: 241 CALKEEY--AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            +  EE   A+ L    + D +   T  G H+ +L  +     I    GS G+QK  L+ 
Sbjct: 227 QSDLEEQTMAEVLSQNVEKDRVLTYTSKGIHKDELRFEMSGDLIK-KIGSQGQQKSFLIA 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK----S 353
           + LA    I   TG  P+LLLD+I   LD+ +   L  +V  +   QIF+T T K    +
Sbjct: 286 LKLAQINRIKEITGKTPLLLLDDIFDKLDDRRVAQLIELVNKEHFGQIFITDTHKERTEA 345

Query: 354 VFDSLNETAKFMRIS 368
           V  ++NE ++   I+
Sbjct: 346 VVKNINEESRIFEIT 360


>gi|284007065|emb|CBA72340.1| dna replication and repair protein [Arsenophonus nasoniae]
          Length = 362

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 162/356 (45%), Gaps = 14/356 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         +G NG GKT+ILEAI  L  GR FR    A V R   
Sbjct: 6   LLIRDFRNIESADLSLATGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQAARVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            +F     R+  +E  + ++++ L ++D      ++IN      + EL K L +  + P 
Sbjct: 66  DNFI-LHGRLVPLEPESRELTLGL-SKDRNGDSKVRINGSDGHKIAELAKLLPMQLITPE 123

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
              + +G    RR FLD   F  +P+      D +RL++ RN  L +    +   S  + 
Sbjct: 124 GFTLLNGGPKYRRAFLDWGCFHNEPQFFAAWSDLKRLLKQRNAALRQATRYNE-LSHWDY 182

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++  L  KI+  R   I  ++  I E   K+  P   LS++        Q     + +Y+
Sbjct: 183 ELIPLAHKISEWRANYIAGIAKDI-ENTCKQFLPEFSLSISY-------QRGWDKETDYS 234

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
             L    + D M   T +GPH++DL +     A+     S G+ K+++  + LA     +
Sbjct: 235 DILVRQFERDRMLTYTALGPHKADLRLRVGGIAVEDIL-SRGQLKLLMCALKLAQGEYFT 293

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             +G   + LLD+ ++ LD+D+R  L   +    +Q+F++  T   V D L+  ++
Sbjct: 294 RQSGQRCLYLLDDFASELDKDRRQLLAERLKATQAQVFVSAITIAQVKDMLDGNSR 349


>gi|330827703|ref|YP_004390655.1| DNA replication and repair protein recF [Aeromonas veronii B565]
 gi|328802839|gb|AEB48038.1| DNA replication and repair protein recF [Aeromonas veronii B565]
          Length = 367

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 154/345 (44%), Gaps = 20/345 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +S+FRN     L       I VG NG GKT++LEAI +L  GR FR      V R G 
Sbjct: 6   LQLSDFRNIQQASLKLSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRVIRQGE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            + F+ FA+ E +EG   + I L  +D      L+I     + + +L + L +  + P  
Sbjct: 66  RA-FTLFAQCE-LEG-RQVPIGL-AKDKSGETQLKIAGAQAQRLADLVELLPVQLIHPDG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR +LD  VF  +P          RL++ RN LL +        +  + +
Sbjct: 122 FNLLTGGPQARRAWLDWGVFHQEPTFFALWGRVRRLLKQRNALLRQST-QYRQLAFWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  LG ++   R     A++ LI E +  +  P   +SL  +   + D     L E    
Sbjct: 181 LVRLGGELAEFRASYCQAITPLIKE-MTADFLPEFDISLGFYRGWEKDTPLGDLLEA--- 236

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG---STGEQKVVLVGIFLAHARL 306
               G + D     T +GP ++D+ +    KA  +      S G+ K+++  + LA    
Sbjct: 237 ----GFERDRALGYTGVGPQKADVRL----KANGVPAQDILSRGQLKLLVCAMRLAQGLY 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           ++  +    I L+D+ ++ LD DKR  L   +    SQ+F+T  D
Sbjct: 289 LNQHSSRGCIFLIDDFASELDVDKRRLLAARLKQCASQVFITAID 333


>gi|309795751|ref|ZP_07690166.1| recombination protein F [Escherichia coli MS 145-7]
 gi|308120630|gb|EFO57892.1| recombination protein F [Escherichia coli MS 145-7]
          Length = 357

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|15607145|ref|NP_214517.1| recombination protein F [Mycobacterium tuberculosis H37Rv]
 gi|148659760|ref|YP_001281283.1| recombination protein F [Mycobacterium tuberculosis H37Ra]
 gi|167969466|ref|ZP_02551743.1| recombination protein F [Mycobacterium tuberculosis H37Ra]
 gi|306778291|ref|ZP_07416628.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu001]
 gi|306974410|ref|ZP_07487071.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu010]
 gi|307082118|ref|ZP_07491288.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu011]
 gi|307086729|ref|ZP_07495842.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu012]
 gi|2842621|sp|Q59586|RECF_MYCTU RecName: Full=DNA replication and repair protein recF
 gi|166220718|sp|A5TY71|RECF_MYCTA RecName: Full=DNA replication and repair protein recF
 gi|1552556|emb|CAB02424.1| DNA REPLICATION AND REPAIR PROTEIN RECF (SINGLE-STRAND DNA BINDING
           PROTEIN) [Mycobacterium tuberculosis H37Rv]
 gi|148503912|gb|ABQ71721.1| DNA replication and repair protein RecF [Mycobacterium tuberculosis
           H37Ra]
 gi|308213441|gb|EFO72840.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu001]
 gi|308356305|gb|EFP45156.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu010]
 gi|308360192|gb|EFP49043.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu011]
 gi|308363879|gb|EFP52730.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu012]
          Length = 385

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 30/363 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A + L      T+FVG NG GKTN++EA+ + +     R ++   + R
Sbjct: 3   VRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +G+  +  ST    +G E   D+ I         V   ++N   +R   ++   LR    
Sbjct: 63  VGTDRAVISTIVVNDGRECAVDLEIATG-----RVNKARLNRSSVRSTRDVVGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   +RRR+LD +     P       ++ER++R R  LL            
Sbjct: 118 APEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231
           G FD+      ++++AE G ++  AR++++N L+  + +  Q    P  + +  G+    
Sbjct: 178 GVFDT--LEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLA-PESRSASIGYRASM 234

Query: 232 -LDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHG 287
            + G  +QS    +            + D+   R   L+GPHR DLI+   D+       
Sbjct: 235 DVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFA 293

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE   + V + LA  +L+    G  P+LLLD++ A LD  +R AL     +   Q+ +
Sbjct: 294 SHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLV 351

Query: 348 TGT 350
           T  
Sbjct: 352 TAA 354


>gi|319954276|ref|YP_004165543.1| DNA replication and repair protein recf [Cellulophaga algicola DSM
           14237]
 gi|319422936|gb|ADV50045.1| DNA replication and repair protein recF [Cellulophaga algicola DSM
           14237]
          Length = 361

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 163/357 (45%), Gaps = 34/357 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N++S    FD++   FVG NG+GKTNIL+AI  LS G+ +         +
Sbjct: 3   LKKLSLINYKNFSSENFDFDSKINCFVGQNGIGKTNILDAIYHLSFGKSYFNPIATQNIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121
            G   FF      E ++           R+++ V  L+     I     +  D+L+ H+ 
Sbjct: 63  HGE-DFFVIEGNFEKLD-----------REEKIVCSLKKGMKKIIKKNGKAYDKLSDHIG 110

Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----T 174
              LV   PS   + +  S  RR+F+D ++   D  + + ++ + +++  RN LL     
Sbjct: 111 FLPLVIISPSDRDLITEGSDTRRKFIDGVISQSDKDYLQTLLKYNKILSQRNSLLKYFAV 170

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
              FD +  S    Q+   G  I   RV  +     +  E  Q  +  + ++SL    D 
Sbjct: 171 NHTFDKTNLSVYNEQLTTYGTVIFNKRVAFLETFIPIFKEQYQVISGGNEEVSLI--YDS 228

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           K  ++   L E   K +    + D   + T +G H+ DL  D  +  I    GS G+QK 
Sbjct: 229 KILET--NLLELLEKNI----EKDRAIQYTSVGIHKDDLNFDLGEHPIK-KFGSQGQQKS 281

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGT 350
            L+ + LA    I   +   PILLLD+I   LDE++ + +  +V D    Q+F++ T
Sbjct: 282 FLIALKLAQFHFIKEQSSTTPILLLDDIFDKLDENRVSHIISLVNDENFGQLFISDT 338


>gi|325105363|ref|YP_004275017.1| DNA replication and repair protein RecF [Pedobacter saltans DSM
           12145]
 gi|324974211|gb|ADY53195.1| DNA replication and repair protein RecF [Pedobacter saltans DSM
           12145]
          Length = 368

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 166/387 (42%), Gaps = 47/387 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  F+NY    L F      F GDNG GKTN+L+AI +L+  + +      D  +
Sbjct: 3   LKNLSLINFKNYDEAELSFSEGANAFSGDNGAGKTNLLDAIHYLALCKSYFNP--IDSQQ 60

Query: 67  IGSPSFFSTFARV--EGMEGLADISIKLETRDD--RSVRCLQINDVVIRVVDELNKHLRI 122
           I     F     V  +  E +    +K   +    R+ +  Q      R+ D +     +
Sbjct: 61  IKQEQDFFMIQGVFDKNTEEIVACGVKRNQKKQFKRNKKEYQ------RLADHIGLFPLV 114

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYF 178
                 +  I  G S ERR+F+D ++   DP++   +I + + +  RN LL      G +
Sbjct: 115 MISPNDVSLILDG-SEERRKFIDNVISQTDPKYLDELIIYNKNLLNRNSLLKNIAETGKY 173

Query: 179 DSSWCSSIEAQMAELGVKINIAR-------VEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           D      ++ Q+   G  I   R       V + N   S + +  +K    +     +G 
Sbjct: 174 DPYLLEILDEQLVNSGRIIFEKRAAFMERFVPIFNQHYSYLTDDAEKVELIYDSPLQSG- 232

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
                   F  L ++  +K       D + +RT  G H+ +LI    +  +    GS G+
Sbjct: 233 -------DFQELLQKSIEK-------DRILQRTTTGIHKDELIFSVHEMPLK-KFGSQGQ 277

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTG 349
           QK  L+ + LA    +    GF P+LLLD+I   LD+ +   L ++V+  D G QIF+T 
Sbjct: 278 QKSFLIALKLAKYSFLYQEKGFKPLLLLDDIFDKLDDKRITKLMKMVSEDDFG-QIFITD 336

Query: 350 TD----KSVFDSLNETAKFMRISNHQA 372
           T+    K VF+ ++       I+N Q 
Sbjct: 337 TNPERLKRVFNDISVALNLFHINNQQV 363


>gi|262377661|ref|ZP_06070881.1| recombinational DNA repair ATPase [Acinetobacter lwoffii SH145]
 gi|262307420|gb|EEY88563.1| recombinational DNA repair ATPase [Acinetobacter lwoffii SH145]
          Length = 359

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 162/355 (45%), Gaps = 33/355 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L+I   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     + 
Sbjct: 1   MHITRLHIERVRNLKTVALHGLQPFNVFYGQNGSGKTSILEAIHLLAAGRSFRTHIPKNY 60

Query: 65  TRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            + G+     F  +     GM+ +A              + +++N  ++    +L K L 
Sbjct: 61  IQHGAQDAIVFAQSATEKIGMQKMAS-----------GEQLIKVNGDLVATQGQLAKLLP 109

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           +  + P    I    +  RR+ LD ++F ++P        + R ++ RN LL    F S 
Sbjct: 110 LQLIDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYHAWQYYSRALKQRNSLLKSKRFLS- 168

Query: 182 WCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
             S +E     ++E G  ++  RV ++        + + K+  P +++SL      ++  
Sbjct: 169 -LSDVEPWNQMLSEYGEILHSQRVGIVEQWKPFFEDDL-KQLLPELQVSL------EYSP 220

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVL 296
            F + +      L +  + D   R T  GPHR+D  L     D  + +   S G++K+++
Sbjct: 221 GFHS-ETGLLNDLTNQHEKDCERRYTEYGPHRADLRLKTPMGDADVIL---SRGQKKLLM 276

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           + + L+   ++ ++     ++LLD+++A LD   +  L   ++ +GSQ+F+T  D
Sbjct: 277 IALKLSQIAML-HSCNKETVVLLDDVTAELDLTAQQRLIERLSQLGSQVFITTLD 330


>gi|203284347|ref|YP_002222087.1| DNA replication and repair protein RecF [Borrelia duttonii Ly]
 gi|201083790|gb|ACH93381.1| DNA replication and repair protein RecF [Borrelia duttonii Ly]
          Length = 355

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 155/350 (44%), Gaps = 25/350 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI+F N   F+N  +  + FD  +  F G+NG GKTNIL+AI  L+    F   +  ++ 
Sbjct: 4   KIEFFN---FKNIENQVINFDFDNIYFCGENGSGKTNILDAIYCLAFASSFLVNTDKELI 60

Query: 66  RIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             G   F+   F + +   G     I L  R+D+    +++N+ ++R  D  +  L I  
Sbjct: 61  TYGEREFYLKCFYQTKEKNG----EINLSVRNDKKE--IKVNNSIVR--DRRDLILNIPA 112

Query: 125 LVPSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           ++ S   I    G  M+RR F D+ +  I   +   +  + ++++ RN +L +   D   
Sbjct: 113 IIFSNHDIDFIIGTPMKRRWFFDQAMSFISLSYLDSLRKYRKILKQRNLILKQR--DKDL 170

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-C 241
                    +  ++I   R   +         Y        +   ++  L+ K+  S  C
Sbjct: 171 LKIYNETFVDCALEITEMRKNFVEHFCRFFQYYCS------LIFDVSCNLEIKYFPSVTC 224

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
             K+E+ + L    K +  S  TLIGPHR DL     +  +   H STG+ +V+ +   L
Sbjct: 225 CSKDEFFEILCLREKDELYSETTLIGPHR-DLYEILSEHRVFTDHASTGQIRVLALIYRL 283

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
               + ++    +PILL D++   LD  KR  +F I+    SQ F T  D
Sbjct: 284 VQVIIFNDKFNMSPILLFDDVFLELDSIKRKKVFEILPK-DSQCFFTFLD 332


>gi|225016756|ref|ZP_03705948.1| hypothetical protein CLOSTMETH_00668 [Clostridium methylpentosum
           DSM 5476]
 gi|224950424|gb|EEG31633.1| hypothetical protein CLOSTMETH_00668 [Clostridium methylpentosum
           DSM 5476]
          Length = 376

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 158/358 (44%), Gaps = 20/358 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI       FRN   + L  D    +  G N  GKTN++EAI   S  + FR     D 
Sbjct: 1   MKITEFKAHNFRNLQDIVLTPDPGINLIYGQNAQGKTNLIEAIWLFSGEKSFR--GNKDS 58

Query: 65  TRIGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             I     F+T +   +  E      I+L  ++  +     +N V  + +  L    +  
Sbjct: 59  RMIWFEEQFATLSLSFDDGEREQHAQIRLGEKNSCT-----LNRVEQKSLSALAGAFQCV 113

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P+   +  G    RR+FLD  +  I P +   +  +ER++  RN LL E    S   
Sbjct: 114 VFSPTHLAVVQGGPSLRRKFLDSAICQIRPDYHGYLGQYERVLAQRNSLLKEIARYSYLR 173

Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TGFLDGKF 236
            +IE    Q+A+LG  + I R + +  +           +    +L L    T F D   
Sbjct: 174 DTIEVWDRQLAKLGTIVTILRQDYVCKVEKFAKHSYAGISSDREQLGLSYQSTAF-DSLL 232

Query: 237 DQSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           D ++   K + Y  +L +    D     T IG HR DL +     A+   +GS G+Q+  
Sbjct: 233 DHAYTQDKVDCYFSRLEESLDQDIRQGFTGIGVHRDDLELLINGLAVK-TYGSQGQQRST 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           ++ + LA ARL+ + TG  P++LLD++ + LD  +++ L   + +  +Q+F+T  D S
Sbjct: 292 ILALKLAEARLLKSITGNHPVILLDDVMSELDISRQDYLLNHIRE--NQVFITCCDSS 347


>gi|21675093|ref|NP_663158.1| recombination/replication protein RecF [Chlorobium tepidum TLS]
 gi|81790424|sp|Q8KA81|RECF_CHLTE RecName: Full=DNA replication and repair protein recF
 gi|21648334|gb|AAM73500.1| recombination/replication protein RecF [Chlorobium tepidum TLS]
          Length = 368

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 168/360 (46%), Gaps = 24/360 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++  ++I+ FRN+  L   F+  H+I    G NG GKT+ILEAI + +  RGF   +  
Sbjct: 1   MRLDSISIANFRNHTLLE--FEPGHSITNIYGRNGSGKTSILEAIHYCALTRGFSGNNDR 58

Query: 63  DVTRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           +  + G   F   S+F   +G+     +SI    +  R  R L +N+  ++        +
Sbjct: 59  EYLKFGEELFTIRSSFTSGQGI--ATKVSITYSPK--REKRIL-VNEQELQTFSSHIGTI 113

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                 P    I +G   ERRRF+D  +   D ++   ++ + R+++ RN LL+      
Sbjct: 114 PCVTFTPREMVIINGAPAERRRFIDTAICQYDRKYLSDLLLYRRILQQRNALLSSEQDPR 173

Query: 181 SWCSSIEA---QMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKL-SLTGFLD 233
              S+++    Q+  +  +I + R   I   +S+   + +++ +   P I   S  G  +
Sbjct: 174 VIDSALDVLTDQLVAIATEIVLVRKRFIEHFTSMLGGVYQWIPEGAEPSILYQSSLGHHE 233

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
             +++      ++  ++ F+  K   + RR TL GPHR DL   Y +K     + S G+Q
Sbjct: 234 NLYEKDKI---QQVFRERFETLKQQELQRRQTLAGPHRDDLQF-YLNKREIRKYASQGQQ 289

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +  LV + +     +   +G  PI LLD++ + LDE     +   +   G Q+ +T T+K
Sbjct: 290 RAFLVAMKMTLQGYLYEASGEIPITLLDDLFSELDEVVSGTMVETLATKG-QVIITSTEK 348


>gi|84497191|ref|ZP_00996013.1| recombination protein F [Janibacter sp. HTCC2649]
 gi|84382079|gb|EAP97961.1| recombination protein F [Janibacter sp. HTCC2649]
          Length = 398

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 165/381 (43%), Gaps = 51/381 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR+Y S  L  +   T FVG NG GKTN++EAI +L+     R A+ A + R
Sbjct: 3   VRHLTVGDFRSYPSAELPLEPGITTFVGLNGQGKTNLVEAIGYLASLSSHRVANDAPLVR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+       A V +G E L    ++LE    R+ R       + R  D L + +R    
Sbjct: 63  FGAAQAIIRGAVVRDGRETL----VELEITPGRANRARLNKSPLTRTRDVLGQ-VRTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----------------RGR 169
            P    +  G   ERRRFLD ++ A  PR      D++R++                RG+
Sbjct: 118 APEDLSLVKGDPSERRRFLDDLLVARQPRWAGARGDYDRILKQRNALLKSAAPVLRGRGK 177

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
            R   EG  D+   S  EA +  L V    A++  + A        + ++  P +  +  
Sbjct: 178 QRRPVEG-VDT--VSEREAALHTLDVWN--AQLAQVAAPLLYARLRLLRDLAPLLGKAYD 232

Query: 230 GFLDGKFDQSF---CALKEEYAKKLFDG-------------------RKMDSMSRRTLIG 267
               G+ D       +L+EE+A ++  G                   R  +     TL+G
Sbjct: 233 EVSAGQSDARVSYKASLREEFAGRIAAGEVPELEELHAELLASFAEVRGQEIERGVTLVG 292

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           PHR D+++   +      + S GE     +G+ LA   L+ +  G  P+L+LD++ A LD
Sbjct: 293 PHRDDVVLTLGELPAK-GYASHGESWSFALGLKLAAYHLLRHDLGDDPVLILDDVFAELD 351

Query: 328 EDKRNALFRIVTDIGSQIFMT 348
             +R  L  +V D   Q+ +T
Sbjct: 352 AGRRERLAAMVADC-EQVLIT 371


>gi|31791180|ref|NP_853673.1| recombination protein F [Mycobacterium bovis AF2122/97]
 gi|121635886|ref|YP_976109.1| recombination protein F [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|121635913|ref|YP_976136.1| recombination protein F [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224988386|ref|YP_002643053.1| DNA replication and repair protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|51316336|sp|Q7U314|RECF_MYCBO RecName: Full=DNA replication and repair protein recF
 gi|254790483|sp|C1AJ00|RECF_MYCBT RecName: Full=DNA replication and repair protein recF
 gi|31616765|emb|CAD92865.1| DNA REPLICATION AND REPAIR PROTEIN RECF (SINGLE-STRAND DNA BINDING
           PROTEIN) [Mycobacterium bovis AF2122/97]
 gi|121491533|emb|CAL69987.1| dna replication and repair protein recF [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|121491560|emb|CAL70017.1| Dna replication and repair protein recF [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224771499|dbj|BAH24305.1| DNA replication and repair protein [Mycobacterium bovis BCG str.
           Tokyo 172]
          Length = 385

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 30/363 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A + L      T+FVG NG GKTN++EA+ + +     R ++   + R
Sbjct: 3   VRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +G+  +  ST    +G E   D+ I         V   ++N   +R   ++   LR    
Sbjct: 63  VGTDRAVISTIVVNDGRECAVDLEIATG-----RVNKARLNRSSVRSTRDVVGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   +RRR+LD +     P       ++ER++R R  LL            
Sbjct: 118 APEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVVRQRTALLKSVPGARYRGDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231
           G FD+      ++++AE G ++  AR++++N L+  + +  Q    P  + +  G+    
Sbjct: 178 GVFDT--LEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLA-PESRSASIGYRASM 234

Query: 232 -LDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHG 287
            + G  +QS    +            + D+   R   L+GPHR DLI+   D+       
Sbjct: 235 DVTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFA 293

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE   + V + LA  +L+    G  P+LLLD++ A LD  +R AL     +   Q+ +
Sbjct: 294 SHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLV 351

Query: 348 TGT 350
           T  
Sbjct: 352 TAA 354


>gi|310825639|ref|YP_003957996.1| DNA replication and repair protein RecF [Eubacterium limosum
           KIST612]
 gi|308737373|gb|ADO35033.1| DNA replication and repair protein RecF [Eubacterium limosum
           KIST612]
          Length = 371

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 169/371 (45%), Gaps = 17/371 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  +RNY    L F     +  G N  GKTN++E+I  LS G   +  +  D+     
Sbjct: 6   LHLVHYRNYRDETLEFSPGINVICGQNAQGKTNLVESIHLLSRGYSHKTGTLMDMVGFDE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             FF   A +   +    +SIK++ +     + + +N       D +   L      P  
Sbjct: 66  SGFFVQ-ADIVKEDTSHTLSIKMQDKK----KTVLLNGKKETRRDAVLGVLTTILFEPDD 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA- 188
            +I      +RRRF++  +    P +   + ++ ++   RN LL E  +DS+   ++++ 
Sbjct: 121 LKIVKEGPEKRRRFMNNEISGFKPNYPYILKNYAKIHNQRNALLKEIKYDSTLALTLDSW 180

Query: 189 --QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFDQSFCAL 243
             Q+ + G  +   R++ +  L+    E  ++ +    +L L      L+    Q F  L
Sbjct: 181 DEQLVKYGSMLMRYRIDYLRRLNVKARELHRELSGGQEELVLFYQNNVLENP--QEFSDL 238

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +  + +KL   R+ D     T  GPH  D+++    K     +GS G+Q+   + + L+ 
Sbjct: 239 ERIFREKLQASRQEDIARGSTTYGPHVDDIMIHLNGKDAK-KYGSQGQQRTAAISLKLSQ 297

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE-TA 362
             +   +TG  P++LLD+I + LD+ ++  +  I+    +Q F+T TD S  +  +E  +
Sbjct: 298 IEIYRESTGDYPVVLLDDILSELDDRRQRNILSILGK--TQAFITCTDPSFIEHYSELPS 355

Query: 363 KFMRISNHQAL 373
           K ++I + + L
Sbjct: 356 KILKIEDGRQL 366


>gi|218551230|ref|YP_002385022.1| recombination protein F [Escherichia fergusonii ATCC 35469]
 gi|226737798|sp|B7LK42|RECF_ESCF3 RecName: Full=DNA replication and repair protein recF
 gi|218358772|emb|CAQ91429.1| gap repair protein [Escherichia fergusonii ATCC 35469]
 gi|323965761|gb|EGB61212.1| DNA replication and repair protein RecF [Escherichia coli M863]
 gi|323975233|gb|EGB70337.1| DNA replication and repair protein RecF [Escherichia coli TW10509]
 gi|324111597|gb|EGC05578.1| DNA replication and repair protein RecF [Escherichia fergusonii
           B253]
 gi|327250843|gb|EGE62545.1| DNA replication and repair protein recF [Escherichia coli STEC_7v]
          Length = 357

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFI-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFTLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|315022216|gb|EFT35244.1| DNA replication and repair protein recF [Riemerella anatipestifer
           RA-YM]
 gi|325336656|gb|ADZ12930.1| Recombinational DNA repair ATPase (RecF pathway) [Riemerella
           anatipestifer RA-GD]
          Length = 380

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 171/374 (45%), Gaps = 28/374 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L ++ F+N+      F ++   FVG+NGVGKTNIL+A+ +LS G+ F   S  DV  
Sbjct: 23  IKKLYLTNFKNHQERVFDFSSEINSFVGNNGVGKTNILDALHYLSVGKSFLGNS--DVNN 80

Query: 67  I-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDELNKHLRISW 124
           I     FF+  A V+  E    + I ++++D +  + ++ ND    R+ D +   L    
Sbjct: 81  ILTGEDFFTLEAVVDDGEKETILKI-IQSKDAK--KLVKKNDKSYARLSDHIG-FLPSVM 136

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180
           + P    + S     RRRFLD M+  +D  +   ++ +++ ++ RN LL       YFD 
Sbjct: 137 ISPYDANLISDSGESRRRFLDAMISQVDAEYLHSIMQYQKALKQRNALLKSFAKNRYFDK 196

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 +  + +    I   R   I  L    + +    +    ++ +    D       
Sbjct: 197 DSLEIYDEPLCQYAGVIFEKRSLFITQLLPTFLHFYNMISNGKEEVDIVYQSD------- 249

Query: 241 CALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             L+E+  A+ L    + D +   T  G H+ +L  +     I    GS G+QK  L+ +
Sbjct: 250 --LEEQTMAEVLSQNVEKDRVLTYTSKGIHKDELRFEMSGDLIK-KIGSQGQQKSFLIAL 306

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK----SV 354
            LA    I   TG  P+LLLD+I   LD+ +   L  +V  +   QIF+T T K    +V
Sbjct: 307 KLAQINRIKEITGKTPLLLLDDIFDKLDDRRVAQLIELVNKEHFGQIFITDTHKERTEAV 366

Query: 355 FDSLNETAKFMRIS 368
             ++NE ++   I+
Sbjct: 367 VKNINEESRIFEIT 380


>gi|15804294|ref|NP_290333.1| recombination protein F [Escherichia coli O157:H7 EDL933]
 gi|15833889|ref|NP_312662.1| recombination protein F [Escherichia coli O157:H7 str. Sakai]
 gi|16131568|ref|NP_418155.1| gap repair protein [Escherichia coli str. K-12 substr. MG1655]
 gi|26250441|ref|NP_756481.1| recombination protein F [Escherichia coli CFT073]
 gi|74314014|ref|YP_312433.1| recombination protein F [Shigella sonnei Ss046]
 gi|89110313|ref|AP_004093.1| gap repair protein [Escherichia coli str. K-12 substr. W3110]
 gi|91213222|ref|YP_543208.1| recombination protein F [Escherichia coli UTI89]
 gi|117625976|ref|YP_859299.1| recombination protein F [Escherichia coli APEC O1]
 gi|157155989|ref|YP_001465185.1| recombination protein F [Escherichia coli E24377A]
 gi|157163180|ref|YP_001460498.1| recombination protein F [Escherichia coli HS]
 gi|168748584|ref|ZP_02773606.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4113]
 gi|168753589|ref|ZP_02778596.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4401]
 gi|168759886|ref|ZP_02784893.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4501]
 gi|168766187|ref|ZP_02791194.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4486]
 gi|168772265|ref|ZP_02797272.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4196]
 gi|168779922|ref|ZP_02804929.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4076]
 gi|168798735|ref|ZP_02823742.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC508]
 gi|170018064|ref|YP_001723018.1| recombination protein F [Escherichia coli ATCC 8739]
 gi|170083202|ref|YP_001732522.1| gap repair protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170684195|ref|YP_001746028.1| recombination protein F [Escherichia coli SMS-3-5]
 gi|191165795|ref|ZP_03027633.1| DNA replication and repair protein RecF [Escherichia coli B7A]
 gi|193069194|ref|ZP_03050151.1| DNA replication and repair protein RecF [Escherichia coli E110019]
 gi|194435781|ref|ZP_03067884.1| DNA replication and repair protein RecF [Escherichia coli 101-1]
 gi|195936321|ref|ZP_03081703.1| recombination protein F [Escherichia coli O157:H7 str. EC4024]
 gi|208808901|ref|ZP_03251238.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4206]
 gi|208814025|ref|ZP_03255354.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4045]
 gi|208819308|ref|ZP_03259628.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4042]
 gi|209397495|ref|YP_002273226.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4115]
 gi|215489040|ref|YP_002331471.1| recombination protein F [Escherichia coli O127:H6 str. E2348/69]
 gi|217324896|ref|ZP_03440980.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. TW14588]
 gi|218556265|ref|YP_002389179.1| recombination protein F [Escherichia coli IAI1]
 gi|218560775|ref|YP_002393688.1| recombination protein F [Escherichia coli S88]
 gi|218691988|ref|YP_002400200.1| recombination protein F [Escherichia coli ED1a]
 gi|218697422|ref|YP_002405089.1| recombination protein F [Escherichia coli 55989]
 gi|218707346|ref|YP_002414865.1| recombination protein F [Escherichia coli UMN026]
 gi|227883921|ref|ZP_04001726.1| recombination protein F [Escherichia coli 83972]
 gi|237703500|ref|ZP_04533981.1| recombination protein F [Escherichia sp. 3_2_53FAA]
 gi|238902790|ref|YP_002928586.1| gap repair protein [Escherichia coli BW2952]
 gi|253771438|ref|YP_003034269.1| recombination protein F [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254038917|ref|ZP_04872969.1| ssDNA and dsDNA binding protein [Escherichia sp. 1_1_43]
 gi|254163651|ref|YP_003046759.1| recombination protein F [Escherichia coli B str. REL606]
 gi|254795703|ref|YP_003080540.1| recombination protein F [Escherichia coli O157:H7 str. TW14359]
 gi|256025569|ref|ZP_05439434.1| recombination protein F [Escherichia sp. 4_1_40B]
 gi|260857889|ref|YP_003231780.1| gap repair protein RecF [Escherichia coli O26:H11 str. 11368]
 gi|260870431|ref|YP_003236833.1| gap repair protein RecF [Escherichia coli O111:H- str. 11128]
 gi|261225853|ref|ZP_05940134.1| gap repair protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258898|ref|ZP_05951431.1| gap repair protein RecF [Escherichia coli O157:H7 str. FRIK966]
 gi|291285119|ref|YP_003501937.1| DNA replication and repair protein recF [Escherichia coli O55:H7
           str. CB9615]
 gi|293407340|ref|ZP_06651262.1| DNA replication and repair protein recF [Escherichia coli FVEC1412]
 gi|293413154|ref|ZP_06655820.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417173|ref|ZP_06659800.1| DNA replication and repair protein recF [Escherichia coli B185]
 gi|293464024|ref|ZP_06664438.1| DNA replication and repair protein recF [Escherichia coli B088]
 gi|297518855|ref|ZP_06937241.1| recombination protein F [Escherichia coli OP50]
 gi|298383081|ref|ZP_06992676.1| DNA replication and repair protein recF [Escherichia coli FVEC1302]
 gi|300815053|ref|ZP_07095278.1| recombination protein F [Escherichia coli MS 107-1]
 gi|300824315|ref|ZP_07104431.1| recombination protein F [Escherichia coli MS 119-7]
 gi|300896029|ref|ZP_07114590.1| recombination protein F [Escherichia coli MS 198-1]
 gi|300903025|ref|ZP_07120967.1| recombination protein F [Escherichia coli MS 84-1]
 gi|300917470|ref|ZP_07134130.1| recombination protein F [Escherichia coli MS 115-1]
 gi|300925524|ref|ZP_07141399.1| recombination protein F [Escherichia coli MS 182-1]
 gi|300932331|ref|ZP_07147599.1| recombination protein F [Escherichia coli MS 187-1]
 gi|300940885|ref|ZP_07155412.1| recombination protein F [Escherichia coli MS 21-1]
 gi|300947539|ref|ZP_07161716.1| recombination protein F [Escherichia coli MS 116-1]
 gi|300956294|ref|ZP_07168596.1| recombination protein F [Escherichia coli MS 175-1]
 gi|300984542|ref|ZP_07177032.1| recombination protein F [Escherichia coli MS 45-1]
 gi|301020911|ref|ZP_07184966.1| recombination protein F [Escherichia coli MS 69-1]
 gi|301028493|ref|ZP_07191733.1| recombination protein F [Escherichia coli MS 196-1]
 gi|301047518|ref|ZP_07194594.1| recombination protein F [Escherichia coli MS 185-1]
 gi|301305954|ref|ZP_07212036.1| recombination protein F [Escherichia coli MS 124-1]
 gi|301325008|ref|ZP_07218558.1| recombination protein F [Escherichia coli MS 78-1]
 gi|306815947|ref|ZP_07450085.1| recombination protein F [Escherichia coli NC101]
 gi|307140400|ref|ZP_07499756.1| recombination protein F [Escherichia coli H736]
 gi|307313231|ref|ZP_07592856.1| DNA replication and repair protein RecF [Escherichia coli W]
 gi|312972008|ref|ZP_07786182.1| DNA replication and repair protein recF [Escherichia coli 1827-70]
 gi|331644424|ref|ZP_08345553.1| DNA replication and repair protein RecF [Escherichia coli H736]
 gi|331649526|ref|ZP_08350612.1| DNA replication and repair protein RecF [Escherichia coli M605]
 gi|331655360|ref|ZP_08356359.1| DNA replication and repair protein RecF [Escherichia coli M718]
 gi|331660042|ref|ZP_08360980.1| DNA replication and repair protein RecF [Escherichia coli TA206]
 gi|331665350|ref|ZP_08366251.1| DNA replication and repair protein RecF [Escherichia coli TA143]
 gi|331675190|ref|ZP_08375943.1| DNA replication and repair protein RecF [Escherichia coli TA280]
 gi|331679798|ref|ZP_08380468.1| DNA replication and repair protein RecF [Escherichia coli H591]
 gi|331685424|ref|ZP_08386010.1| DNA replication and repair protein RecF [Escherichia coli H299]
 gi|67471979|sp|P0A7H0|RECF_ECOLI RecName: Full=DNA replication and repair protein recF
 gi|67471980|sp|P0A7H1|RECF_ECOL6 RecName: Full=DNA replication and repair protein recF
 gi|67471981|sp|P0A7H2|RECF_ECO57 RecName: Full=DNA replication and repair protein recF
 gi|97180964|sp|Q3YWB4|RECF_SHISS RecName: Full=DNA replication and repair protein recF
 gi|122421840|sp|Q1R4N7|RECF_ECOUT RecName: Full=DNA replication and repair protein recF
 gi|166220709|sp|A1AHN5|RECF_ECOK1 RecName: Full=DNA replication and repair protein recF
 gi|166918721|sp|A7ZTQ6|RECF_ECO24 RecName: Full=DNA replication and repair protein recF
 gi|166918722|sp|A8A6G1|RECF_ECOHS RecName: Full=DNA replication and repair protein recF
 gi|189039623|sp|B1IYP4|RECF_ECOLC RecName: Full=DNA replication and repair protein recF
 gi|226737789|sp|B7MGC1|RECF_ECO45 RecName: Full=DNA replication and repair protein recF
 gi|226737790|sp|B5YXA2|RECF_ECO5E RecName: Full=DNA replication and repair protein recF
 gi|226737792|sp|B7M4I9|RECF_ECO8A RecName: Full=DNA replication and repair protein recF
 gi|226737793|sp|B1X9S9|RECF_ECODH RecName: Full=DNA replication and repair protein recF
 gi|226737794|sp|B7NF17|RECF_ECOLU RecName: Full=DNA replication and repair protein recF
 gi|226737796|sp|B1LL25|RECF_ECOSM RecName: Full=DNA replication and repair protein recF
 gi|254790475|sp|B7UMG7|RECF_ECO27 RecName: Full=DNA replication and repair protein recF
 gi|254790476|sp|B7L842|RECF_ECO55 RecName: Full=DNA replication and repair protein recF
 gi|254790477|sp|B7N204|RECF_ECO81 RecName: Full=DNA replication and repair protein recF
 gi|259563362|sp|C4ZYX7|RECF_ECOBW RecName: Full=DNA replication and repair protein recF
 gi|12518539|gb|AAG58897.1|AE005601_3 ssDNA and dsDNA binding, ATP binding [Escherichia coli O157:H7 str.
           EDL933]
 gi|26110871|gb|AAN83055.1|AE016769_170 DNA replication and repair protein recF [Escherichia coli CFT073]
 gi|41645|emb|CAA27870.1| unnamed protein product [Escherichia coli K-12]
 gi|147539|gb|AAA24511.1| RecF [Escherichia coli]
 gi|1790135|gb|AAC76723.1| gap repair protein [Escherichia coli str. K-12 substr. MG1655]
 gi|13364110|dbj|BAB38058.1| DNA repair and genetic recombination protein RecF [Escherichia coli
           O157:H7 str. Sakai]
 gi|73857491|gb|AAZ90198.1| ssDNA and dsDNA binding protein [Shigella sonnei Ss046]
 gi|85676344|dbj|BAE77594.1| gap repair protein [Escherichia coli str. K12 substr. W3110]
 gi|91074796|gb|ABE09677.1| ssDNA and dsDNA binding, ATP binding [Escherichia coli UTI89]
 gi|115515100|gb|ABJ03175.1| recombination protein F [Escherichia coli APEC O1]
 gi|157068860|gb|ABV08115.1| DNA replication and repair protein RecF [Escherichia coli HS]
 gi|157078019|gb|ABV17727.1| DNA replication and repair protein RecF [Escherichia coli E24377A]
 gi|169752992|gb|ACA75691.1| DNA replication and repair protein RecF [Escherichia coli ATCC
           8739]
 gi|169891037|gb|ACB04744.1| gap repair protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170521913|gb|ACB20091.1| DNA replication and repair protein RecF [Escherichia coli SMS-3-5]
 gi|187771421|gb|EDU35265.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4196]
 gi|188016945|gb|EDU55067.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4113]
 gi|189002585|gb|EDU71571.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4076]
 gi|189358910|gb|EDU77329.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4401]
 gi|189364573|gb|EDU82992.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4486]
 gi|189369691|gb|EDU88107.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4501]
 gi|189378816|gb|EDU97232.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC508]
 gi|190904119|gb|EDV63830.1| DNA replication and repair protein RecF [Escherichia coli B7A]
 gi|192957518|gb|EDV87964.1| DNA replication and repair protein RecF [Escherichia coli E110019]
 gi|194425324|gb|EDX41308.1| DNA replication and repair protein RecF [Escherichia coli 101-1]
 gi|208728702|gb|EDZ78303.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4206]
 gi|208735302|gb|EDZ83989.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4045]
 gi|208739431|gb|EDZ87113.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4042]
 gi|209158895|gb|ACI36328.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4115]
 gi|209754128|gb|ACI75371.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|209754130|gb|ACI75372.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|209754132|gb|ACI75373.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|209754134|gb|ACI75374.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|209754136|gb|ACI75375.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|215267112|emb|CAS11559.1| gap repair protein [Escherichia coli O127:H6 str. E2348/69]
 gi|217321117|gb|EEC29541.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. TW14588]
 gi|218354154|emb|CAV00754.1| gap repair protein [Escherichia coli 55989]
 gi|218363034|emb|CAR00673.1| gap repair protein [Escherichia coli IAI1]
 gi|218367544|emb|CAR05329.1| gap repair protein [Escherichia coli S88]
 gi|218429552|emb|CAR10375.1| gap repair protein [Escherichia coli ED1a]
 gi|218434443|emb|CAR15371.1| gap repair protein [Escherichia coli UMN026]
 gi|222035414|emb|CAP78159.1| DNA replication and repair protein recF [Escherichia coli LF82]
 gi|226838882|gb|EEH70909.1| ssDNA and dsDNA binding protein [Escherichia sp. 1_1_43]
 gi|226902764|gb|EEH89023.1| recombination protein F [Escherichia sp. 3_2_53FAA]
 gi|227839199|gb|EEJ49665.1| recombination protein F [Escherichia coli 83972]
 gi|238861285|gb|ACR63283.1| gap repair protein [Escherichia coli BW2952]
 gi|242379239|emb|CAQ34044.1| ssDNA and dsDNA binding, ATP binding, subunit of RecFOR complex
           [Escherichia coli BL21(DE3)]
 gi|253322482|gb|ACT27084.1| DNA replication and repair protein RecF [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975552|gb|ACT41223.1| recombination protein F [Escherichia coli B str. REL606]
 gi|253979708|gb|ACT45378.1| recombination protein F [Escherichia coli BL21(DE3)]
 gi|254595103|gb|ACT74464.1| gap repair protein [Escherichia coli O157:H7 str. TW14359]
 gi|257756538|dbj|BAI28040.1| gap repair protein RecF [Escherichia coli O26:H11 str. 11368]
 gi|257766787|dbj|BAI38282.1| gap repair protein RecF [Escherichia coli O111:H- str. 11128]
 gi|260447282|gb|ACX37704.1| DNA replication and repair protein RecF [Escherichia coli DH1]
 gi|281180754|dbj|BAI57084.1| DNA replication and repair protein RecF [Escherichia coli SE15]
 gi|284923783|emb|CBG36881.1| DNA replication and repair protein [Escherichia coli 042]
 gi|290764992|gb|ADD58953.1| DNA replication and repair protein recF [Escherichia coli O55:H7
           str. CB9615]
 gi|291321656|gb|EFE61092.1| DNA replication and repair protein recF [Escherichia coli B088]
 gi|291425631|gb|EFE98667.1| DNA replication and repair protein recF [Escherichia coli FVEC1412]
 gi|291431204|gb|EFF04197.1| DNA replication and repair protein recF [Escherichia coli B185]
 gi|291468287|gb|EFF10782.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294492502|gb|ADE91258.1| DNA replication and repair protein RecF [Escherichia coli IHE3034]
 gi|298276917|gb|EFI18435.1| DNA replication and repair protein recF [Escherichia coli FVEC1302]
 gi|299878455|gb|EFI86666.1| recombination protein F [Escherichia coli MS 196-1]
 gi|300300578|gb|EFJ56963.1| recombination protein F [Escherichia coli MS 185-1]
 gi|300316881|gb|EFJ66665.1| recombination protein F [Escherichia coli MS 175-1]
 gi|300360089|gb|EFJ75959.1| recombination protein F [Escherichia coli MS 198-1]
 gi|300398378|gb|EFJ81916.1| recombination protein F [Escherichia coli MS 69-1]
 gi|300404931|gb|EFJ88469.1| recombination protein F [Escherichia coli MS 84-1]
 gi|300408375|gb|EFJ91913.1| recombination protein F [Escherichia coli MS 45-1]
 gi|300415274|gb|EFJ98584.1| recombination protein F [Escherichia coli MS 115-1]
 gi|300418364|gb|EFK01675.1| recombination protein F [Escherichia coli MS 182-1]
 gi|300452876|gb|EFK16496.1| recombination protein F [Escherichia coli MS 116-1]
 gi|300454366|gb|EFK17859.1| recombination protein F [Escherichia coli MS 21-1]
 gi|300459917|gb|EFK23410.1| recombination protein F [Escherichia coli MS 187-1]
 gi|300523202|gb|EFK44271.1| recombination protein F [Escherichia coli MS 119-7]
 gi|300531945|gb|EFK53007.1| recombination protein F [Escherichia coli MS 107-1]
 gi|300838805|gb|EFK66565.1| recombination protein F [Escherichia coli MS 124-1]
 gi|300848102|gb|EFK75862.1| recombination protein F [Escherichia coli MS 78-1]
 gi|305850343|gb|EFM50800.1| recombination protein F [Escherichia coli NC101]
 gi|306906914|gb|EFN37423.1| DNA replication and repair protein RecF [Escherichia coli W]
 gi|307555840|gb|ADN48615.1| DNA replication and repair protein RecF [Escherichia coli ABU
           83972]
 gi|307628776|gb|ADN73080.1| recombination protein F [Escherichia coli UM146]
 gi|309704147|emb|CBJ03494.1| DNA replication and repair protein [Escherichia coli ETEC H10407]
 gi|310334385|gb|EFQ00590.1| DNA replication and repair protein recF [Escherichia coli 1827-70]
 gi|312948267|gb|ADR29094.1| recombination protein F [Escherichia coli O83:H1 str. NRG 857C]
 gi|315063006|gb|ADT77333.1| gap repair protein [Escherichia coli W]
 gi|315138284|dbj|BAJ45443.1| DNA replication and repair protein recF [Escherichia coli DH1]
 gi|315254613|gb|EFU34581.1| recombination protein F [Escherichia coli MS 85-1]
 gi|315285495|gb|EFU44940.1| recombination protein F [Escherichia coli MS 110-3]
 gi|315292858|gb|EFU52210.1| recombination protein F [Escherichia coli MS 153-1]
 gi|315296898|gb|EFU56186.1| recombination protein F [Escherichia coli MS 16-3]
 gi|315618594|gb|EFU99180.1| DNA replication and repair protein recF [Escherichia coli 3431]
 gi|320191200|gb|EFW65850.1| DNA recombination and repair protein RecF [Escherichia coli O157:H7
           str. EC1212]
 gi|320193754|gb|EFW68387.1| DNA recombination and repair protein RecF [Escherichia coli
           WV_060327]
 gi|320201272|gb|EFW75853.1| DNA recombination and repair protein RecF [Escherichia coli
           EC4100B]
 gi|320639425|gb|EFX09040.1| recombination protein F [Escherichia coli O157:H7 str. G5101]
 gi|320644868|gb|EFX13904.1| recombination protein F [Escherichia coli O157:H- str. 493-89]
 gi|320650132|gb|EFX18628.1| recombination protein F [Escherichia coli O157:H- str. H 2687]
 gi|320655480|gb|EFX23415.1| recombination protein F [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661106|gb|EFX28542.1| recombination protein F [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666232|gb|EFX33238.1| recombination protein F [Escherichia coli O157:H7 str. LSU-61]
 gi|323155376|gb|EFZ41559.1| DNA replication and repair protein recF [Escherichia coli EPECa14]
 gi|323164688|gb|EFZ50483.1| DNA replication and repair protein recF [Shigella sonnei 53G]
 gi|323173318|gb|EFZ58947.1| DNA replication and repair protein recF [Escherichia coli LT-68]
 gi|323177712|gb|EFZ63296.1| DNA replication and repair protein recF [Escherichia coli 1180]
 gi|323182495|gb|EFZ67899.1| DNA replication and repair protein recF [Escherichia coli 1357]
 gi|323189565|gb|EFZ74845.1| DNA replication and repair protein recF [Escherichia coli RN587/1]
 gi|323376400|gb|ADX48668.1| DNA replication and repair protein RecF [Escherichia coli KO11]
 gi|323934949|gb|EGB31327.1| DNA replication and repair protein RecF [Escherichia coli E1520]
 gi|323939116|gb|EGB35330.1| DNA replication and repair protein RecF [Escherichia coli E482]
 gi|323944172|gb|EGB40252.1| DNA replication and repair protein RecF [Escherichia coli H120]
 gi|323949943|gb|EGB45827.1| DNA replication and repair protein RecF [Escherichia coli H252]
 gi|323955006|gb|EGB50784.1| DNA replication and repair protein RecF [Escherichia coli H263]
 gi|323959765|gb|EGB55415.1| DNA replication and repair protein RecF [Escherichia coli H489]
 gi|323971177|gb|EGB66423.1| DNA replication and repair protein RecF [Escherichia coli TA007]
 gi|324008036|gb|EGB77255.1| recombination protein F [Escherichia coli MS 57-2]
 gi|326337251|gb|EGD61086.1| DNA recombination and repair protein RecF [Escherichia coli O157:H7
           str. 1044]
 gi|326341622|gb|EGD65411.1| DNA recombination and repair protein RecF [Escherichia coli O157:H7
           str. 1125]
 gi|331036718|gb|EGI08944.1| DNA replication and repair protein RecF [Escherichia coli H736]
 gi|331042024|gb|EGI14168.1| DNA replication and repair protein RecF [Escherichia coli M605]
 gi|331047375|gb|EGI19453.1| DNA replication and repair protein RecF [Escherichia coli M718]
 gi|331053257|gb|EGI25290.1| DNA replication and repair protein RecF [Escherichia coli TA206]
 gi|331057860|gb|EGI29846.1| DNA replication and repair protein RecF [Escherichia coli TA143]
 gi|331067635|gb|EGI39037.1| DNA replication and repair protein RecF [Escherichia coli TA280]
 gi|331072970|gb|EGI44295.1| DNA replication and repair protein RecF [Escherichia coli H591]
 gi|331077795|gb|EGI49007.1| DNA replication and repair protein RecF [Escherichia coli H299]
          Length = 357

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|1321906|emb|CAA63259.1| recF [Mycobacterium tuberculosis H37Rv]
          Length = 385

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 163/363 (44%), Gaps = 30/363 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A + L      T+FVG NG GKTN++EA+ + +     R ++   + R
Sbjct: 3   VRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +G+  +  ST    +G E   D+ I         V   ++N   +R   ++   LR    
Sbjct: 63  VGTDRAVISTIVVNDGRECAVDLEIATG-----RVNKARLNRSSVRSTRDVVGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   +RRR+LD +     P       ++ER++R R  LL            
Sbjct: 118 APEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231
           G FD+      ++++AE G ++  AR++++N L+  + +  Q    P  + +  G+    
Sbjct: 178 GVFDT--LDLWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLA-PESRSASIGYRASM 234

Query: 232 -LDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHG 287
            + G  +QS    +            + D+   R   L+GPHR DLI+   D+       
Sbjct: 235 DVTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFA 293

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE   + V + LA  +L+    G  P+LLLD++ A LD  +R AL     +   Q+ +
Sbjct: 294 SHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLV 351

Query: 348 TGT 350
           T  
Sbjct: 352 TAA 354


>gi|325685103|gb|EGD27234.1| recombination protein F [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 381

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 152/349 (43%), Gaps = 20/349 (5%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
           S FRN A L L FD    +F+G+N  GKTN+LEAI FL+  R  R ++  ++   G   F
Sbjct: 9   SGFRNLALLDLEFDPHVNVFLGENAQGKTNLLEAIYFLALSRSHRTSNDREMIAFGQ-DF 67

Query: 73  FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
            S   RV   +   D+ I +  +     +   +N V    + +   HL      P    +
Sbjct: 68  ASLAGRVHKRQLDLDLRIVISKKG----KSAWVNRVEQARLSKYVGHLNAILFSPEDLEL 123

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEA 188
             G    RRRF+D     I+P +      + +L++ RN  L +       D      +  
Sbjct: 124 VKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQVLLGVLTE 183

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           Q+A    ++   R   +  L+    E  +  +    +L +      K + +      +  
Sbjct: 184 QVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAK-EITAADQPAQIK 242

Query: 249 KKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLA 302
           +KL D      D   RR  T +GPHR DL      K    AH   S G+Q+ + + + LA
Sbjct: 243 QKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKN---AHLFASQGQQRTIALSLKLA 299

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             +LI   TG  PILLLD++ + LD++++ AL   +     Q F+T TD
Sbjct: 300 EIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFIHG-QIQTFITTTD 347


>gi|312967890|ref|ZP_07782102.1| DNA replication and repair protein recF [Escherichia coli 2362-75]
 gi|312287451|gb|EFR15359.1| DNA replication and repair protein recF [Escherichia coli 2362-75]
          Length = 357

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDRHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|206900621|ref|YP_002251531.1| DNA replication and repair protein RecF, putative [Dictyoglomus
           thermophilum H-6-12]
 gi|206739724|gb|ACI18782.1| DNA replication and repair protein RecF, putative [Dictyoglomus
           thermophilum H-6-12]
          Length = 340

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 32/348 (9%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ I+ +++  FRN++     F     +  G NG GKT+ILEAI++LS  R FR A    
Sbjct: 5   RMLIESISLKNFRNFSDFSTSFKDGINVIYGPNGSGKTSILEAIAYLSNPRSFRSARDYQ 64

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI---RVVDELNKHL 120
           + +IG   FF    +V   +   +I+I     + +  +   +N   +   R + E+   +
Sbjct: 65  LIKIGE-KFFEITGKVLTGKEHHEITINYYYDELKKEKTAYLNGFKVKRFRDIQEIFIAI 123

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
             S+   +M     G + +RR F D +   +D  +   + ++E+L+  RN +L     D 
Sbjct: 124 PFSFKDYAM---IDGYATQRRDFFDDIFSLLDLEYYEILRNYEKLLDERNEILKSENIDR 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  +M  L  KI   R  MI  LS                     +LD  F   +
Sbjct: 181 DYVIYLAKEMQPLAEKIVEKREAMIKELSK--------------------YLDPMFKVEY 220

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            +  E   K + D  + D     T +GPH  D  + Y          S G+++++ + + 
Sbjct: 221 VS--EFKGKNIADYIEEDIARGSTTVGPHVHDDYIFYYKGNPAKYFASEGQKRLLYLSLV 278

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           LA  +LI  T  + P+ L D+    LD    + L + ++++  Q+ + 
Sbjct: 279 LAFRKLIEETKLYEPVFLFDDPINVLDP---HLLEKFISNLSGQVIIA 323


>gi|282860299|ref|ZP_06269368.1| DNA replication and repair protein RecF [Prevotella bivia
           JCVIHMP010]
 gi|282586896|gb|EFB92132.1| DNA replication and repair protein RecF [Prevotella bivia
           JCVIHMP010]
          Length = 368

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 166/376 (44%), Gaps = 41/376 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N  +  L    +   F+G NG GKTN+L+AI +LS  +       ++V
Sbjct: 1   MRLDKLSIINYKNIQAATLELSPKLNCFIGHNGEGKTNLLDAIYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDE 115
                    + F  +EG           E  D   V C          + N    +    
Sbjct: 61  M-----CHTADFLVLEG-------DYTTEAGDAEQVYCGMKRGSKKHFKRNK---KEYKR 105

Query: 116 LNKHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           L++H+ +  L+   P+   + +G S ERR  +D ++   D  +   +  + + ++ RN L
Sbjct: 106 LSQHIGLVPLIFISPADSSLITGGSEERRHLMDVVISQYDALYMESLSRYNKALQQRNSL 165

Query: 173 L-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           L  E   D +    +E QMAE G K+   R   +  L  +     Q  +  H ++SLT  
Sbjct: 166 LKQEEEPDETLLELLEGQMAEYGEKVFKKRTAFVEDLQPVFQRIYQAISNEHEQVSLTYV 225

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
             G+       ++ + AK        D +   +L G H+ DL++   + +I    GS G+
Sbjct: 226 SHGQRGDLLNVIQRDRAK--------DRIMGYSLHGIHKDDLVMQLGNYSIK-REGSQGQ 276

Query: 292 QKVVLVGIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMT 348
            K  ++ + LA    +  TT    P+LLLD+I   LD ++   + R+V+  D G QIF+T
Sbjct: 277 NKTYVLALKLAQFDFLRRTTANNTPLLLLDDIFDKLDANRVEQIIRLVSSDDFG-QIFIT 335

Query: 349 GTDKSVFDSLNETAKF 364
            T++   D + +   F
Sbjct: 336 DTNRDHLDKILQGGAF 351


>gi|218702549|ref|YP_002410178.1| recombination protein F [Escherichia coli IAI39]
 gi|226737791|sp|B7NR02|RECF_ECO7I RecName: Full=DNA replication and repair protein recF
 gi|218372535|emb|CAR20410.1| gap repair protein [Escherichia coli IAI39]
          Length = 357

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFTLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|301644372|ref|ZP_07244373.1| recombination protein F [Escherichia coli MS 146-1]
 gi|301077313|gb|EFK92119.1| recombination protein F [Escherichia coli MS 146-1]
          Length = 357

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 158/361 (43%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +           + +
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTCYEQ-LRPWDKE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      EYA+
Sbjct: 181 LIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------EYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    ++ 
Sbjct: 233 VLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K   + 
Sbjct: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351

Query: 369 N 369
            
Sbjct: 352 K 352


>gi|317120852|ref|YP_004100855.1| DNA replication and repair protein RecF [Thermaerobacter
           marianensis DSM 12885]
 gi|315590832|gb|ADU50128.1| DNA replication and repair protein RecF [Thermaerobacter
           marianensis DSM 12885]
          Length = 400

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 165/377 (43%), Gaps = 36/377 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + + +FR+Y    L  +   T+ VG NG+GKTN+LEAI F + GR  R +  AD+ R
Sbjct: 3   IRRVVLRQFRSYERATLELEPGLTLLVGPNGIGKTNLLEAIHFAATGRSPRTSRDADLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G P     + RVE  + +A              + L+++    R V +L+  L + +  
Sbjct: 63  NGEP---VCYVRVEWDDPVAGRRAVEMAYHREQGKALRLDGRKRRRVADLHGALPVVYFA 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183
           P    +       RR +LDR++  + P +   + D++R++  RN+LL E   G   +S  
Sbjct: 120 PESLALVKAGPAARRDYLDRLLVQVVPGYGPLLHDYQRVLAQRNQLLREIRAGRAAASLL 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE------NFPHIKLSLTGFL--DGK 235
           +  +  +   G  +   R  +++ L+ L+     +           +KL   G+L  DG 
Sbjct: 180 AIWDEPLLRHGTALRRHRQALLDELAPLVAAAAARVEAGGAVGPGEVKL---GYLAGDGP 236

Query: 236 FDQSFCALKEEYA-----------------KKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
            D +    +EE +                   L    + +     TL GP R D  +   
Sbjct: 237 GDAAHEPGREEPSGAPEEAGDPGQRAAGVPPSLAAWHREEIARGTTLWGPQRDDFAI-LL 295

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           D     A  S G+Q+ + + + LA   LI    G  P+LLLD++ + LD  +R  L   V
Sbjct: 296 DGRDARAFASQGQQRALALALTLAEVHLIHRRLGRWPVLLLDDVLSELDARRRRHLLETV 355

Query: 339 TDIGSQIFMTGTDKSVF 355
             +  Q+ +T TD+  +
Sbjct: 356 AGL-PQVIVTATDEPAW 371


>gi|237741010|ref|ZP_04571491.1| DNA replication and repair protein recF [Fusobacterium sp. 4_1_13]
 gi|229431054|gb|EEO41266.1| DNA replication and repair protein recF [Fusobacterium sp. 4_1_13]
          Length = 369

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/354 (22%), Positives = 161/354 (45%), Gaps = 21/354 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I +LN   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++ +
Sbjct: 6   ITYLN---FRNLENNSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRISWL 125
                F S+   +   + +A+  I +  ++   + +    N   I   D   K + I   
Sbjct: 63  YNFEEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGK-VNIIAY 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   + 
Sbjct: 119 IPEDIILINGSPKHRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFAI 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCAL 243
            E +  +    I   R+E + +LS ++ ++Y +  N    + L     LD     +   +
Sbjct: 179 YEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKITVEMI 238

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-----GSTGEQKVVLVG 298
           +E   K++   +  +   + +L+GPH+ D       K +   H      S GE+K ++  
Sbjct: 239 QESLKKEILQKKYQEDRYKFSLVGPHKDDY------KFLLNGHEAKFSASQGEKKSIIFS 292

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + L+   +I       P++++D+I+++ DED+R ++         Q+ ++ TDK
Sbjct: 293 LKLSEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346


>gi|262066870|ref|ZP_06026482.1| RECF protein [Fusobacterium periodonticum ATCC 33693]
 gi|291379421|gb|EFE86939.1| RECF protein [Fusobacterium periodonticum ATCC 33693]
          Length = 369

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 162/350 (46%), Gaps = 13/350 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I +LN   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+     ++ +
Sbjct: 6   ISYLN---FRNLENTSVELSEKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTTEMIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F S+ +  + +     IS++ +     + +    N   I   D   K + I   +
Sbjct: 63  YNFDEFISSISYSDYIAN-NKISVRFKNIPG-AKKEFFFNKKRISQTDFYGK-INIIAYI 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   ++   +  
Sbjct: 120 PEDIILINGSPKNRRDFFDIEISQIDKEYLNNLKNYDKLLKIRNKYLKENKRNTEEFAIY 179

Query: 187 EAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCALK 244
           E +  +    I   R+E + +LS ++ ++Y +  N    + L     LD     +   ++
Sbjct: 180 EKEFIKYASYIIFTRLEYVKSLSIILNLQYRKLFNIEQELNLKYETNLDKTGKVTIEMIQ 239

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           E   K++   +  +   R +L+GPH+ D   +++  +  I+    S GE+K ++  + L+
Sbjct: 240 ESLQKEISQKKYQEDRYRFSLVGPHKDDYKFLLNGYEAKIS---ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
              +I       P++++D+I+++ DE++R ++         Q+ ++ TDK
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEERRKSILEFFNKRDIQVLISSTDK 346


>gi|290548|gb|AAA62051.1| recF (CG Site No. 308) [Escherichia coli]
          Length = 357

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAXRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|308171895|ref|YP_003918600.1| DNA repair and genetic recombination factor [Bacillus
           amyloliquefaciens DSM 7]
 gi|307604759|emb|CBI41130.1| DNA repair and genetic recombination factor [Bacillus
           amyloliquefaciens DSM 7]
 gi|328551704|gb|AEB22196.1| recombination protein F [Bacillus amyloliquefaciens TA208]
 gi|328909963|gb|AEB61559.1| DNA repair and genetic recombination factor [Bacillus
           amyloliquefaciens LL3]
          Length = 370

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 169/390 (43%), Gaps = 54/390 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L ++ +RNY    L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++ R
Sbjct: 3   IQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62

Query: 67  IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                +   +A++EG  M+   DI ++L     +  +  ++N +  + + +    L    
Sbjct: 63  -----WDEDYAKIEGRVMKRNGDIPMQLVI--SKKGKKGKVNHIEQQKLSQYVGALNTIM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRFLD  +  +   +   +  +++++  RN  L +       D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQRNHFLKQLQSRKQTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIK 225
           +    +  Q+ E   K+   R++                   L  L ++Y       H  
Sbjct: 176 TMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKY-------HTA 228

Query: 226 LSLTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
           L ++   D       + +SF  LKE+  ++             TL GPHR D++  Y + 
Sbjct: 229 LDVSDPKDLSKIGNSYQESFSKLKEKEIERGV-----------TLFGPHRDDVLF-YVNG 276

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                +GS G+Q+   + + LA   LI    G  PILLLD++ + LD+ +++ L   +  
Sbjct: 277 RDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG 336

Query: 341 -IGSQIFMTGTDKSVFDSLNETAKFMRISN 369
            + + +  T  D    ++L++   F R+ N
Sbjct: 337 RVQTFVTTTSVDGIDHETLHQAGMF-RVEN 365


>gi|302535569|ref|ZP_07287911.1| recombination protein F [Streptomyces sp. C]
 gi|302444464|gb|EFL16280.1| recombination protein F [Streptomyces sp. C]
          Length = 378

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 156/360 (43%), Gaps = 24/360 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   +      T FVG NG GKTN++EAI +L+     R +S A +
Sbjct: 1   MHVSHLSLADFRSYARAEVPLAPGVTAFVGPNGQGKTNLVEAIGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R    +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGA---DRAVIRAAVTQGERQQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD +V A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGFL 232
              D S     +  +A  G ++   R+++I  L  L     E +     P + L+     
Sbjct: 177 RSMDLSTLDVWDQHLARAGAELLAQRLDLIATLLPLADKAYEQLAPGGGP-LALAYKSSA 235

Query: 233 DGKFDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
               D      +EE  + L       RK +     TL GPHR DL++   D      + S
Sbjct: 236 GDPVDNGAARTREELYEVLLATLSQVRKQEIERGVTLAGPHRDDLLLRLGDLPAK-GYAS 294

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+  + G  P+L+LD++ A LD  +R  L  +V   G Q+ +T
Sbjct: 295 HGESWSYALALRLASYELL-RSEGAEPVLILDDVFAELDARRRERLAELVAG-GEQVLVT 352


>gi|256846676|ref|ZP_05552132.1| DNA replication and repair protein recF [Fusobacterium sp.
           3_1_36A2]
 gi|294784383|ref|ZP_06749674.1| RECF protein [Fusobacterium sp. 3_1_27]
 gi|256717896|gb|EEU31453.1| DNA replication and repair protein recF [Fusobacterium sp.
           3_1_36A2]
 gi|294487955|gb|EFG35310.1| RECF protein [Fusobacterium sp. 3_1_27]
          Length = 369

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 164/351 (46%), Gaps = 15/351 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I +LN   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++ +
Sbjct: 6   ITYLN---FRNLENNSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEMIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRISWL 125
                F S+   +   + +A+  I +  ++   + +    N   I   D   K + I   
Sbjct: 63  YNFEEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGK-VNIIAY 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   + 
Sbjct: 119 IPEDIILINGSPKHRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFAI 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFCAL 243
            E +  +    I   R+E + +LS ++ ++Y +  N    + L     LD     +   +
Sbjct: 179 YEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKITVEMI 238

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           +E   K++   +  +   + +L+GPH+ D   +++  +  ++    S GE+K ++  + L
Sbjct: 239 QESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGHEAKVS---ASQGEKKSIIFSLKL 295

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +   +I       P++++D+I+++ DED+R ++         Q+ ++ TDK
Sbjct: 296 SEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346


>gi|188491708|ref|ZP_02998978.1| DNA replication and repair protein RecF [Escherichia coli 53638]
 gi|188486907|gb|EDU62010.1| DNA replication and repair protein RecF [Escherichia coli 53638]
          Length = 357

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 159/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++    + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAAHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|193211679|ref|YP_001997632.1| DNA replication and repair protein RecF [Chlorobaculum parvum NCIB
           8327]
 gi|259563359|sp|B3QQY5|RECF_CHLP8 RecName: Full=DNA replication and repair protein recF
 gi|193085156|gb|ACF10432.1| DNA replication and repair protein RecF [Chlorobaculum parvum NCIB
           8327]
          Length = 368

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 165/357 (46%), Gaps = 18/357 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++  ++I+ FRN+  L   F+  H++    G NG GKT+ILEAI + +  RGF   +  
Sbjct: 1   MRLDSISIANFRNHTLLE--FEPGHSVTNIYGRNGSGKTSILEAIHYCALTRGFSGNNDR 58

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           +  + G    F+  +     +G+A   + +     R  R L +N+  ++        +  
Sbjct: 59  EYLKFGE-ELFTIRSSFTSGQGIA-TKVSVAYSPKREKRIL-VNEQELQTFSSHIGTIPC 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFD 179
               P    I +G   ERRRF+D  +   D ++   ++ + R+++ RN LL+   +  F 
Sbjct: 116 VTFTPREMVIINGAPAERRRFIDTAICQYDRKYLSDLLLYRRILQQRNALLSSEQDPRFI 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHI-KLSLTGFLDGK 235
            S    +  Q+     +I + R   I   +S+   + +++ +   P I   S  G  +  
Sbjct: 176 DSALDVLTDQLVATATEIVLVRKRFIEHFTSMLGDVYQWIPEGAEPSILYQSSLGHHENL 235

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           +++    +++ + ++    ++ +   R+TL GPHR DL   Y +K     + S G+Q+  
Sbjct: 236 YEKD--KIQQVFRERFETLKQQELQRRQTLAGPHRDDLQF-YLNKREIRKYASQGQQRAF 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           LV + +     +   +G  PI LLD++ + LDE     +   +   G Q+ +T T K
Sbjct: 293 LVAMKMTLQGYLYEASGEIPITLLDDLFSELDEVVSGTMVETLATKG-QVIITSTGK 348


>gi|300362675|ref|ZP_07058851.1| recombination protein F [Lactobacillus gasseri JV-V03]
 gi|300353666|gb|EFJ69538.1| recombination protein F [Lactobacillus gasseri JV-V03]
          Length = 374

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 157/356 (44%), Gaps = 32/356 (8%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           + +FRN+  L+  FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++ R G   
Sbjct: 8   LKDFRNFKELKTNFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKELIRFG--- 64

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             S FA ++G    + + ++L+ R   + +   +N +  + +      +      P    
Sbjct: 65  --SKFAGLQGRVHKSQLQVELKLRLTANGKKAWVNRLEQKRLSAYVGQMNAILFSPEDLA 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187
           +  G    RRRF+D     I+  +      + ++++ RN  L +       D  +   + 
Sbjct: 123 LVKGAPSVRRRFMDLEFGQINSEYLYFSSQYRQVLQQRNNYLKQLSIKKANDQVFLDVLS 182

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-----LTGFLDGKFDQSFCA 242
            Q+A +  +I   R++ I  L+S    Y Q     H ++S     L  F      +    
Sbjct: 183 DQLAGIAAEIISRRIKYIKKLNS----YAQA---AHSEISGQAEKLQIFYRPSVKEIIPE 235

Query: 243 LKEE--YAKKLFDGRKMDSMSRR---TLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVV 295
              E  Y K +   +K  S   R   TL GPHR DL     DK    AH   S G+Q+ +
Sbjct: 236 DDVETIYQKVITSYKKNRSNEIRKGTTLSGPHRDDLEFLINDKN---AHDFASQGQQRTI 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + + LA  +L+       PILLLD++ + LD  +++ L   +    +Q F+T TD
Sbjct: 293 SLSVKLAEIQLVHELKQEYPILLLDDVMSELDHRRQSRLLNYIHG-KTQTFITTTD 347


>gi|239980784|ref|ZP_04703308.1| recombination protein F [Streptomyces albus J1074]
 gi|291452642|ref|ZP_06592032.1| recombination protein F [Streptomyces albus J1074]
 gi|291355591|gb|EFE82493.1| recombination protein F [Streptomyces albus J1074]
          Length = 377

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 162/361 (44%), Gaps = 27/361 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   L  D   T FVG NG GKTN++EA+ +L+     R +S   +
Sbjct: 1   MHVSHLSLADFRSYARADLALDPGVTAFVGPNGQGKTNLVEAVGYLATLSSHRVSSDQPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       A VE  E    I ++L        R  + + V  R V  +   +R   
Sbjct: 61  VRAGAERAV-IRAAVEHGERRRTIELELNPGKANRARINRSSQVKPRDVLGI---VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD +V A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYDRVLKQRNTLLKTAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFP-HIKLSLTGF 231
              D S     +  +A  G ++   R+++I  L  L     E +     P H++   +  
Sbjct: 177 RTMDLSTLDVWDQHLARAGAELLAQRLDLIATLQPLTDKAYEQLAPGGGPVHLEYKPSAA 236

Query: 232 LDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             G   ++ + +L E  A+     RK +     TL+GPHR DL++   D      + S G
Sbjct: 237 GTGTTREELYGSLLEALAEV----RKQEIERGVTLVGPHRDDLLLRLGDLPAK-GYASHG 291

Query: 291 EQKVVLVGIFLAHARLISNTTGFA---PILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           E   + + + LA   L+    G A   P+L+LD++ A LD  +R  L  +V   G Q+ +
Sbjct: 292 ESWSLALALRLASYDLLRTEGGEATGEPVLVLDDVFAELDARRRERLAELVAP-GEQVLV 350

Query: 348 T 348
           T
Sbjct: 351 T 351


>gi|34540225|ref|NP_904704.1| recF protein [Porphyromonas gingivalis W83]
 gi|51316314|sp|Q7MX24|RECF_PORGI RecName: Full=DNA replication and repair protein recF
 gi|34396537|gb|AAQ65603.1| recF protein [Porphyromonas gingivalis W83]
          Length = 364

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 160/381 (41%), Gaps = 38/381 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L+I  F++ A+    F  +    VG+NG+GKTN+L+A+ FLS  R         V R
Sbjct: 3   IEELHIVNFKSIAAADCRFSPKVNCLVGNNGMGKTNLLDALHFLSFCRSHLSVPDNMVVR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +      R E  +G   I + L  R  +     +      R+ D + +   +  +
Sbjct: 63  HGEEMALLQGLYRDESGDG---IELLLSIRPGKHKVLRRNKKEYERLSDHIGR-FPLVIV 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   ++  G S ERRRF+D+ +   DPR+   +I + R ++ RN +L +   D +    
Sbjct: 119 SPQDYQLILGGSDERRRFMDQQLCQQDPRYLSALIQYNRHLQQRNTMLKQDRHDDALMDV 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +E QM     +I   R   I     +  +     +    K+SL+                
Sbjct: 179 LELQMGSYAAEICNKRSRFIEDFLPVFNDLYSDISGSAEKVSLS---------------- 222

Query: 246 EYAKKLFDGRKMDSMSRRTL----------IGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            Y   L DG  ++ + RR+            G H+ +L +      +    GS G+ K  
Sbjct: 223 -YRSHLADGIPLEELLRRSRPKDYLLGFSSCGVHKDELEM-LLGGVLIRKIGSEGQNKTF 280

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSV 354
           L+ + LA  R         PILLLD+I   LD  +   + R+V   G  QIF+T T++  
Sbjct: 281 LISMKLAQFRHQQLHGDETPILLLDDIFDKLDATRVERIIRLVGGNGFGQIFITDTNRKN 340

Query: 355 FD----SLNETAKFMRISNHQ 371
            D    S +E  +  +I N Q
Sbjct: 341 LDEIIASWSEDYRLFKIENGQ 361


>gi|313203095|ref|YP_004041752.1| DNA replication and repair protein recf [Paludibacter
           propionicigenes WB4]
 gi|312442411|gb|ADQ78767.1| DNA replication and repair protein RecF [Paludibacter
           propionicigenes WB4]
          Length = 363

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 161/362 (44%), Gaps = 39/362 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N     LVF      F+G+NG+GKTNIL+AI FLS  +    +     
Sbjct: 1   MRLNSLSILNYKNIREAELVFSPNINCFIGNNGMGKTNILDAIYFLSFCKSHSNS----- 55

Query: 65  TRIGSPSFF--STFARVEGMEGLAD----ISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
             I S +    + F  ++G   L D    I   ++ R  +  +  +      +  + L+ 
Sbjct: 56  --IDSQNILHGAEFCLLQGKYTLGDQTEDIYCGMKMRQKKQFKRNK------KEYERLSD 107

Query: 119 HLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174
           H+ +  LV   P    +  G S ERR+F+D ++   +  +   ++ +   ++ RN LL +
Sbjct: 108 HIGLLPLVLVSPDDSELIQGGSEERRKFIDGVISQYNKTYLNNLLQYNNALKQRNALLKS 167

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           E   D S     E QMA  G  I   R   I+    +   Y    +  + ++SL+ +   
Sbjct: 168 EKPVDDSLLDIWEEQMAAFGNYIYEQRKLFIDEFIPVFQNYYSYISVGNEQISLS-YHSQ 226

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL---IVDYCDKAITIAHGSTGE 291
             D+           K+   R  D +   +  G H+ DL   + DY  K +    GS G+
Sbjct: 227 HHDRDI-------KTKMLATRDRDRILGYSTQGIHKDDLEMLLGDYPIKRV----GSQGQ 275

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGT 350
            K  L+ + LA    +  T   +P+LLLD+I   LD  +   +  +V+ D   QIF+T T
Sbjct: 276 NKTYLISLKLAQFDFLKRTHNLSPLLLLDDIFDKLDSVRVKKIIELVSGDTFGQIFITDT 335

Query: 351 DK 352
           ++
Sbjct: 336 NR 337


>gi|15834965|ref|NP_296724.1| recombination protein F [Chlamydia muridarum Nigg]
 gi|270285139|ref|ZP_06194533.1| recombination protein F [Chlamydia muridarum Nigg]
 gi|270289161|ref|ZP_06195463.1| recombination protein F [Chlamydia muridarum Weiss]
 gi|301336534|ref|ZP_07224736.1| recombination protein F [Chlamydia muridarum MopnTet14]
 gi|13959495|sp|Q9PKW5|RECF_CHLMU RecName: Full=DNA replication and repair protein recF
 gi|7190387|gb|AAF39207.1| recF protein, putative [Chlamydia muridarum Nigg]
          Length = 365

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 149/355 (41%), Gaps = 12/355 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRNY+ LRL    +     G N  GKTNILEA+  LS GR FR +   + 
Sbjct: 1   MRVHSLFLKDFRNYSELRLELGPEMNSIFGLNAQGKTNILEALYILSLGRSFRTSRLTEA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS  FF     +E +     +   L  + D+  + +  +   I  +  L     +  
Sbjct: 61  IRFGSSHFF-----IEAVFSQNQVFHTLSIQVDKRGKKILFDGAPITKLSALVGLFPVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFD-SSW 182
                  I  G   ERRRFLD ++     ++  ++  + + +  RN  + T+ Y   ++W
Sbjct: 116 FSVKDTTIIEGSPAERRRFLDLLLAQASEKYTGQIALYHKALDQRNAAIKTQDYKTIAAW 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S + A     G  + + R E    L  +            + L     L      +   
Sbjct: 176 NSPLIA----YGSLVALLRYECAKKLHKIFQNLWDNTLKETLSLRYESSLITTESPTLND 231

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +   Y ++L      D     T +GPHR +LI+   D  ++    S G++  +L  +  A
Sbjct: 232 IASNYYEQLRLANTKDFELGYTTVGPHRDELIITLNDLPVS-KFSSEGQKHSLLAVLRFA 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
               +       P+L +D+I A LD+++ + LF++ T +G  +  +    +  DS
Sbjct: 291 ECVYLQEEFLIHPLLCMDDIHACLDQNRLDQLFQLSTSLGQTVTTSTICPNHLDS 345


>gi|242237463|ref|YP_002985644.1| recombination protein F [Dickeya dadantii Ech703]
 gi|242129520|gb|ACS83822.1| DNA replication and repair protein RecF [Dickeya dadantii Ech703]
          Length = 361

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 156/364 (42%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR    A V R   
Sbjct: 6   LLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARVIRHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     R+ G E    + +      D +VR   I+      V EL + L I  + P  
Sbjct: 66  AEFI-LHGRIAGAERERSVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL+R RN  L +  ++    +W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFMAWSNLKRLLRQRNAALRQVNHYGQLRAW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E   A+++ I      +  P   LS + F  G   +S      +
Sbjct: 178 DQELVPLAERISQWRAEYSAAIATDIASTC-AQFLPEFSLSFS-FQRGWDKES------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T +GPH++D  +     A+     S G+ K+++  + LA    
Sbjct: 230 YAELLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++  T + + D + E  K  
Sbjct: 289 LTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGKMF 348

Query: 366 RISN 369
           R+  
Sbjct: 349 RVEQ 352


>gi|282896236|ref|ZP_06304259.1| RecF protein [Raphidiopsis brookii D9]
 gi|281198925|gb|EFA73803.1| RecF protein [Raphidiopsis brookii D9]
          Length = 371

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 174/378 (46%), Gaps = 54/378 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  FRNY   ++ F A  TI VG+N  GK+N+LE++  L+  R  R    +D  +
Sbjct: 3   LQSLELRNFRNYQEQKVEFTAPKTILVGNNAQGKSNLLESVELLATLRSHRLGKDSDFIQ 62

Query: 67  IGSPSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            G        AR+  +     G++++++ L  R+ R  R + IN   +R      + +  
Sbjct: 63  EG-----QDMARINAILDRTTGISNLTLNLR-RNSR--RTVAINGETVR------RQMDF 108

Query: 123 SWLVPSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL- 173
             ++ +++  FS L +E        RR +LD ++  ++P +   +  + +++R RN  L 
Sbjct: 109 LGILNAVE--FSSLDLELVRGSPAIRRSWLDTLLVQLEPVYAHILHQYNQVLRQRNAFLK 166

Query: 174 ---TEGYFD-SSWCSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKE 219
               +G  +  S  +  +AQ+   G K+   R   I  L  +           ME ++  
Sbjct: 167 TIQQKGIKNHDSELAIWDAQLVTTGTKVMRRRNRAIQRLGPIATHWHSSISGKMEKLEIN 226

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
             P++ +     +D + +     L + +  ++ +   ++S    TL+GPHR D I    +
Sbjct: 227 YMPNVPI----LIDEQQE-----LLQFFLDRVQEHSAIESYRGTTLVGPHR-DEIELVVN 276

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
                 + S G+Q+ +++ + LA  +LI       P+LLLD++ A LD  ++N L   + 
Sbjct: 277 GTPARQYASQGQQRTLVLALKLAELQLIEEVVNDTPLLLLDDVLAELDLSRQNQLLDAIQ 336

Query: 340 DIGSQIFMTGTDKSVFDS 357
           D   Q  +T T    FD+
Sbjct: 337 D-RFQTLITTTHLGAFDA 353


>gi|116628687|ref|YP_813859.1| recombination protein F [Lactobacillus gasseri ATCC 33323]
 gi|238853342|ref|ZP_04643722.1| DNA replication and repair protein RecF [Lactobacillus gasseri
           202-4]
 gi|311111573|ref|ZP_07712970.1| DNA replication and repair protein RecF [Lactobacillus gasseri
           MV-22]
 gi|122274315|sp|Q047F1|RECF_LACGA RecName: Full=DNA replication and repair protein recF
 gi|116094269|gb|ABJ59421.1| DNA replication and repair protein RecF [Lactobacillus gasseri ATCC
           33323]
 gi|238834030|gb|EEQ26287.1| DNA replication and repair protein RecF [Lactobacillus gasseri
           202-4]
 gi|311066727|gb|EFQ47067.1| DNA replication and repair protein RecF [Lactobacillus gasseri
           MV-22]
          Length = 374

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 156/356 (43%), Gaps = 32/356 (8%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           + +FRN+  L+  FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++ R G   
Sbjct: 8   LKDFRNFKELKTDFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKELIRFG--- 64

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             S FA ++G    + + ++L+ R   + +   +N +  + +      +      P    
Sbjct: 65  --SKFAGLQGRVHKSQLQVELKLRLTANGKKAWVNRLEQKKLSAYVGQMNAILFSPEDLA 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187
           +  G    RRRF+D     I+  +      + ++++ RN  L +       D  +   + 
Sbjct: 123 LVKGAPSVRRRFMDLEFGQINSEYLYFSSQYRQVLQQRNNYLKQLSIKKANDQVFLDVLS 182

Query: 188 AQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHIKLSLTGFLDGKFD 237
            Q+A +  +I   R++ I  L+S             E +Q    P +K  +    +   +
Sbjct: 183 DQLAGIAAEIISRRIKYIKKLNSYAKAAHSEISGQAEKLQIFYRPSVKEIIP---EDNVE 239

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVV 295
             +  +   Y K     R  +     TL GPHR DL     +K    AH   S G+Q+ +
Sbjct: 240 TIYRKVITSYKK----NRPNEIRKGTTLSGPHRDDLEFLINEKN---AHDFASQGQQRTI 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + + LA  +L+   T   PILLLD++ + LD  +++ L   +    +Q F+T TD
Sbjct: 293 SLSVKLAEIQLVHELTQEYPILLLDDVMSELDHRRQSRLLNYIHG-KTQTFITTTD 347


>gi|297158794|gb|ADI08506.1| recombination protein F [Streptomyces bingchenggensis BCW-1]
          Length = 407

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 159/387 (41%), Gaps = 49/387 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   +      T FVG NG GKTN++EA+ +++     R ++ A +
Sbjct: 1   MHVTHLSLADFRSYARAEVALGPGVTAFVGPNGQGKTNLVEAVGYVATLGSHRVSADAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A VEG        ++LE    ++ R        +R  D L   LR   
Sbjct: 61  VRMGADRAVVRAAIVEGDR---QQLVELELNPGKANRARINRSSQVRPRDVLGI-LRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRADYERVLKQRNTLLKTAALARRHGG 176

Query: 181 ----------SWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLS 227
                     S     +  +A  G ++   R+++I AL  L     E +     P     
Sbjct: 177 GRGSGGDGALSTLDVWDQHLARAGAELLAQRLDLIAALQPLTDKAYEQLAPGGGPIGFDY 236

Query: 228 LTGFLDG-KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
            +   DG     +   L E+ +  L   RK +     TL+GPHR DLI+   +      +
Sbjct: 237 RSSVGDGLAAAGTREELYEQLSAALTAARKQEIERGVTLVGPHRDDLILRLGELPAK-GY 295

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFA-------------------------PILLLDE 321
            S GE     + + LA   L+     +A                         P+L+LD+
Sbjct: 296 ASHGESWSYALALRLASYDLLRADISWAPGGLSAEAAEAAGGGEAGAVRRAGEPVLVLDD 355

Query: 322 ISAHLDEDKRNALFRIVTDIGSQIFMT 348
           + A LDE +R  L  +V   G Q+ +T
Sbjct: 356 VFAELDERRRERLAELVAP-GEQVLVT 381


>gi|15806109|ref|NP_294813.1| recombination protein F [Deinococcus radiodurans R1]
 gi|13959503|sp|Q9RVE0|RECF_DEIRA RecName: Full=DNA replication and repair protein recF
 gi|126031361|pdb|2O5V|A Chain A, Recombination Mediator Recf
 gi|6458823|gb|AAF10663.1|AE001959_3 recF protein [Deinococcus radiodurans R1]
          Length = 359

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 165/376 (43%), Gaps = 36/376 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+   +RN A   L F    T   G+NG GKTN+LEA      G+        D 
Sbjct: 4   VRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQ-------TDA 56

Query: 65  TRIGS---PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            RI           + R +  +G   +SI+ E    R  R L+++ V  R  D L +   
Sbjct: 57  PRIEQLIQAGETEAYVRADLQQG-GSLSIQ-EVGLGRGRRQLKVDGVRARTGD-LPRGGA 113

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           + W+ P    +  G    RR +LD ++  +  R+  ++  +ER +  RN  L  G     
Sbjct: 114 V-WIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQRNAALRGG---EE 169

Query: 182 WCSSI-EAQMAELGVKINIARVEMINALSSLIMEY-VQKENFPHIKLSLTGFLDGKFDQS 239
           W   + +  + +LG +I + R   +  L  L  E   Q  +   + L+LT          
Sbjct: 170 WAMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGSRKTLALTLT---------- 219

Query: 240 FCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                E YA  L  GR+ + ++R  T+ GPHR DL++   D   +  + S GE + V + 
Sbjct: 220 ESTSPETYAADL-RGRRAEELARGSTVTGPHRDDLLLTLGDFPAS-DYASRGEGRTVALA 277

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           +  A   L+    G  P+LLLD+ +A LD  +R  L  +   +  Q  +TGT+ +   +L
Sbjct: 278 LRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV-PQAIVTGTELAPGAAL 336

Query: 359 N---ETAKFMRISNHQ 371
               +  +F  +++ +
Sbjct: 337 TLRAQAGRFTPVADEE 352


>gi|269216528|ref|ZP_06160382.1| DNA replication and repair protein RecF [Slackia exigua ATCC
           700122]
 gi|269130057|gb|EEZ61139.1| DNA replication and repair protein RecF [Slackia exigua ATCC
           700122]
          Length = 379

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 172/382 (45%), Gaps = 56/382 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+  ++  FRNY S  +      T+F+G N  GK+N+LEAI  ++    FR A   ++
Sbjct: 3   LHIQSFSLRNFRNYRSFEMDDVDPLTMFIGPNATGKSNVLEAIQLVTSATTFRGAKSREM 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKL--ETRD-DRSVRCLQINDVVIRVVDELNKHLR 121
            R G                 AD+   +  +TRD + S+R  + +  +   V+   KH +
Sbjct: 63  IRWGCD--------------CADVKAHIVSDTRDLETSMRLTESSRSI--AVNGKRKHGQ 106

Query: 122 -ISWLVPSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
            +  ++PS+  +FS   M+        RR  LD +   +   HR    D+ ++++ +N L
Sbjct: 107 DVLGILPSV--MFSPEDMQLVTGAHGFRRDALDALGSQLSRTHRVLRRDYLKIVKHKNSL 164

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS---------------SLIMEYVQ 217
           +  G  + S   S+   +   G  + + R  + + L+               +L M YV 
Sbjct: 165 MKNG-IEGSLLDSVNDMLVTSGAHLYVYRAALFDNLAVRIARAYSEISSSGETLDMRYVP 223

Query: 218 KENFPHIKLSLTGFLDGK--FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
             ++    L      D    F+   C+      + LF+    +S   R L+GPH +D + 
Sbjct: 224 --SWEDADLYSDRMRDAAHFFEVEECS--NRMRRSLFNRHDEESRRGRALVGPH-ADKLF 278

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
            Y D      +GS G+++ + +   +A   LI +  G  PILLLD++++ LDE +R AL 
Sbjct: 279 FYLDGRNATLYGSQGQRRSIALSWKIAEIGLIEDVLGLKPILLLDDVASELDESRREALI 338

Query: 336 RIV-TDIGSQIFMTGTDKSVFD 356
            ++  DI  Q F+T TD   F+
Sbjct: 339 GLLHHDI--QTFITTTDMGAFE 358


>gi|303237205|ref|ZP_07323775.1| DNA replication and repair protein RecF [Prevotella disiens
           FB035-09AN]
 gi|302482592|gb|EFL45617.1| DNA replication and repair protein RecF [Prevotella disiens
           FB035-09AN]
          Length = 371

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 163/367 (44%), Gaps = 33/367 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  ++N  +  L   A+   F+G NGVGKTN+L+A+ +LS  +       ++V     
Sbjct: 6   LSIINYKNIQAATLNLSAKLNCFIGHNGVGKTNLLDAVYYLSFCKSAFNPKDSEVM---- 61

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDELNKHL 120
               S F  +EG          +++ +   V C          + N    + + E    L
Sbjct: 62  -CHESDFFVLEG-------DYTMDSEEIEQVTCGMKRGTKKHFKRNRKAYKKLSEHIGLL 113

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFD 179
            + ++ PS   +  G S ERR+ +D ++   D  +   ++ + + ++ RN LL  E   D
Sbjct: 114 PLIFVSPSDISLIEGGSEERRKLMDVVISQYDRPYIETLLRYNKALQQRNSLLKQEEEPD 173

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
           ++    +E QMAE G +I   R   +  L  +  E  Q  +    ++SL     G+    
Sbjct: 174 TTLLELLEMQMAEYGTEIYKKRAAFVEQLVPVFQEIYQAISQNREQVSLEYISHGQRGDL 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++ + AK        D +   +L G H+ DL++      +    GS G+ K  ++ +
Sbjct: 234 LDVIQRDRAK--------DRIMGYSLHGIHKDDLLMTLGGFPMK-REGSQGQNKTFVLAL 284

Query: 300 FLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDS 357
            LA    +  T G   P+LLLD+I   LD D+   + ++V  D   QIF+T T++   D 
Sbjct: 285 KLAQFNFLKQTAGNRTPLLLLDDIFDKLDADRVEQIVKLVAGDSFGQIFITDTNRDHLDK 344

Query: 358 LNETAKF 364
           +  ++ F
Sbjct: 345 ILSSSNF 351


>gi|300769989|ref|ZP_07079868.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762465|gb|EFK59282.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33861]
          Length = 368

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 167/377 (44%), Gaps = 38/377 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  F+NY    L F  +   F G+NG GKTN+L+AI +LS  + +     +   +
Sbjct: 3   LKQLSVLNFKNYTESALEFLPEVNAFAGENGAGKTNLLDAIHYLSLCKSYFNPIDSQHIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC----------LQINDVVIRVVDEL 116
            G   F      V+G       S + +TR D  + C           +      R+ D +
Sbjct: 63  QGMDWFM-----VQG-------SFENDTRTD-VISCSLKKNQKKQFKKNKKDYPRLADHI 109

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE- 175
            +   +  + P+   I +  S ERR+F+D ++   D  +  ++I + +++  RN +L + 
Sbjct: 110 GQ-FPLVMISPNDSMIITDGSEERRKFMDNVISQTDHHYLDKLITYNKVILQRNIMLKQA 168

Query: 176 ---GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
              G  D      +  Q+ E+G +I   R +    +   + E+ +  +F          +
Sbjct: 169 RESGQLDLGLLEVLNLQLVEVGAQIFEKRQQF---MKDFLPEFEKHYHFLTESAEQVSLV 225

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
              ++     +  ++   L    + D    RT  G H+ DL+    +       GS G+Q
Sbjct: 226 ---YESPLMTI--DFQDLLDRNLERDRALERTSQGIHKDDLLFTIHEGMPLKKFGSQGQQ 280

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTD 351
           K  L+ + LA    + +  GF P+LLLD+I   LDE +   L ++V+ D   QIF+T TD
Sbjct: 281 KSFLIALKLAQYSFLQSRKGFKPLLLLDDIFDKLDERRTRKLMQMVSEDDFGQIFLTDTD 340

Query: 352 -KSVFDSLNETAKFMRI 367
            + V     E A+ +RI
Sbjct: 341 SERVQRIFEEIAQPIRI 357


>gi|256424433|ref|YP_003125086.1| DNA replication and repair protein RecF [Chitinophaga pinensis DSM
           2588]
 gi|256039341|gb|ACU62885.1| DNA replication and repair protein RecF [Chitinophaga pinensis DSM
           2588]
          Length = 360

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 157/356 (44%), Gaps = 29/356 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++ +F+NY+     F  +     G NG GKTN+L+AI ++   + +  +S A  
Sbjct: 2   LSLKKISLVQFKNYSGKSFSFHKRIVGITGRNGSGKTNLLDAIYYICFTKSYFTSSEAQN 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           T+  +  F     R+EG         K+        +   +ND       +         
Sbjct: 62  TQYQTNGF-----RLEGFMDRDHQEGKIVCTLKDGKKEFALNDEAYERFSQHIGRYPAVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P    I  G S ERR++LD ++  + P +   +I ++++++ +N LL     +G    
Sbjct: 117 IAPDDAEIILGGSEERRKWLDALLCQLHPGYLDHLITYQKILQQKNTLLKTMNGQGGSQD 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--- 237
           +     + Q+ + G  +     E   A     ++ VQK         L  +L GK +   
Sbjct: 177 TLLDIFDEQLVKHGTPV----FEWRRAFLPGFIQQVQK---------LYDYLAGKHETVN 223

Query: 238 -QSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            Q    L E+ + + L   R  D M +RT  G H+ DL     D  +  +  S G++K  
Sbjct: 224 IQYQSGLHEQTFTELLAANRYKDMMMQRTTGGIHKDDLQFVLDDHPMKTS-ASQGQRKSF 282

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGT 350
           L  + LA   +I     F P+LLLD++   LD+D+ + L  +V+  +  Q+F+T T
Sbjct: 283 LFALKLAQFEVIKEHKKFPPLLLLDDVFEKLDQDRVSRLINLVSSPVYGQVFITDT 338


>gi|194431058|ref|ZP_03063351.1| DNA replication and repair protein RecF [Shigella dysenteriae 1012]
 gi|194420513|gb|EDX36589.1| DNA replication and repair protein RecF [Shigella dysenteriae 1012]
 gi|320180041|gb|EFW54983.1| DNA recombination and repair protein RecF [Shigella boydii ATCC
           9905]
 gi|332084050|gb|EGI89257.1| DNA replication and repair protein recF [Shigella dysenteriae
           155-74]
          Length = 357

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLIKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|82546036|ref|YP_409983.1| recombination protein F [Shigella boydii Sb227]
 gi|97180953|sp|Q31UV3|RECF_SHIBS RecName: Full=DNA replication and repair protein recF
 gi|81247447|gb|ABB68155.1| RecF [Shigella boydii Sb227]
 gi|320185535|gb|EFW60301.1| DNA recombination and repair protein RecF [Shigella flexneri CDC
           796-83]
 gi|332089378|gb|EGI94482.1| DNA replication and repair protein recF [Shigella boydii 3594-74]
          Length = 357

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLVEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|332881092|ref|ZP_08448760.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332681004|gb|EGJ53933.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 359

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 163/363 (44%), Gaps = 46/363 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + +  ++N +S  L F A    FVG+NG GKTN+L+AI  L  G+ +   S     R
Sbjct: 3   LKKVTVVNYKNISSKTLEFSATINCFVGNNGAGKTNLLDAIYHLGMGKSYFSPSAVQNIR 62

Query: 67  IGSP-----SFFSTFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
                     FF + +R E +   L     K+   + ++           R+ D + K+ 
Sbjct: 63  HDEDFYLIDGFFESNSREEQIVCSLKKGQKKMMKHNGKAYE---------RLSDHIGKYP 113

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----- 175
            +       D I  G S  RR+FLD ++   D  +   +I + RL+  RN LL +     
Sbjct: 114 MVIISPADRDLIVEG-SETRRKFLDSVIAQTDREYLELLIRYNRLLLQRNTLLKQIAESG 172

Query: 176 -GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYV-----QKENFPHIKLSL 228
              FD+      +AQ+A LG  I   R + +   + +   +Y      Q+E    +K+  
Sbjct: 173 ISAFDT--LQVYDAQLAPLGQFIYEKRRQFMEGFAPIFSYQYAYIAGGQEE----VKVVY 226

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
              L  +  ++  A  ++           D  ++ T  G H+ DL ++     I   +GS
Sbjct: 227 ESMLHEQTQEALLAQHQQ----------RDLQAQYTTAGIHKDDLRLEIQGYPIK-KYGS 275

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFM 347
            G+QK +L+ + L+   L+ +T G  PI+LLD+I   LD+ +   L ++VT +   Q+F+
Sbjct: 276 QGQQKSLLIALKLSQFELLKHTLGITPIVLLDDIFDKLDDTRVAQLVQLVTQNHFGQLFI 335

Query: 348 TGT 350
           T T
Sbjct: 336 TDT 338


>gi|300781941|ref|YP_003762232.1| DNA replication and repair protein RecF [Amycolatopsis mediterranei
           U32]
 gi|299791455|gb|ADJ41830.1| DNA replication and repair protein RecF [Amycolatopsis mediterranei
           U32]
          Length = 384

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 158/377 (41%), Gaps = 29/377 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +++FR++    L  +   T+ VG NG GKTN+LEAI +++     R A+ A + R
Sbjct: 3   LRHLQVTDFRSWPQADLALEPGPTVLVGQNGRGKTNLLEAIGYVATLGSHRVATDAPLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G         RV  +    +++++LE    R+ R       V R  D L   LR     
Sbjct: 63  HGC---ERALVRVAVVNDDRELTVELEITAGRANRARVNRGAVGRPRDVLGI-LRTVLFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------EGYFDS 180
           P    +  G   ERRRFLD ++    PR+     D+E++++ RN LL        G  D 
Sbjct: 119 PEDLALVRGDPGERRRFLDELLVLRAPRYAGVRADYEKVLKQRNALLKTAGKRRTGREDP 178

Query: 181 SWCSSIE--------AQMAELGVKINI--------ARVEMINALSSLIMEYVQKENFPHI 224
              S++E        A    L  ++N+        A   M  A  S   +   + +    
Sbjct: 179 YALSTLEVWDDHLAEAGAELLAARLNLVADLAPHAASAYMGVAPDSRPAKITYRSSLGAA 238

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
                G  DG+  Q    LK+   K L + RK +     +L+GPHR +L +    +A   
Sbjct: 239 MPETYGVPDGERAQPEV-LKDVLLKALGEARKAELERGISLVGPHRDELEL-ILGEAPAK 296

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
            + S GE     + + L    L+    G  P+LLLD++ A LD  +R  L  +       
Sbjct: 297 GYASHGESWSFALALRLGSYELLRAEAG-EPVLLLDDVFAELDRKRRARLAEVAASAEQV 355

Query: 345 IFMTGTDKSVFDSLNET 361
           +     D+ V   L  T
Sbjct: 356 LVTAAVDEDVPGELAGT 372


>gi|312126265|ref|YP_003991139.1| DNA replication and repair protein recf [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776284|gb|ADQ05770.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 353

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 157/349 (44%), Gaps = 23/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK + I  FR Y      F  +  + VG+N  GKT++LEA+ F   G+ F+     DV
Sbjct: 1   MKIKNIYIENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCICGKSFKS---RDV 57

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123
             I   +F S + ++E    + +I   +    D+++ + + IND  I  + EL    +  
Sbjct: 58  DAI---NFDSYYFKLEMSAEVGNIEYNVFCYVDKALDKRIMINDKKINRLSELISLFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P   R+       RRRFLD  V  + P   +   +++R +  RN  L + Y      
Sbjct: 115 FFEPDTTRLIKHQPKLRRRFLDMEVAKLYPYMTKVYSEYQRALHSRNAFL-KSYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA- 242
              + Q+++LG  I   R E+I+ LS      ++ +            L+ K+  S  A 
Sbjct: 174 DVYDVQISQLGFLIFQKRQEVIDRLS------IEAQKIFSYVFENKSLLELKYMPSINAS 227

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            +EEY K++      D     T  G HR D  +   D    I   S G+ K+  V + L+
Sbjct: 228 SEEEYYKEMKKHLVKDLSLGYTTKGIHRDDFEI-LIDGKPAIDFASEGQIKLAAVSVVLS 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            A L +      P+L+LD++ + LD+ KR  L + ++   S  F+T  +
Sbjct: 287 SALLYTE-----PVLILDDVFSELDKFKRRNLIKFLSQYQS--FVTSAE 328


>gi|210634750|ref|ZP_03298278.1| hypothetical protein COLSTE_02205 [Collinsella stercoris DSM 13279]
 gi|210158690|gb|EEA89661.1| hypothetical protein COLSTE_02205 [Collinsella stercoris DSM 13279]
          Length = 361

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 167/355 (47%), Gaps = 27/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++ ++R++A   L  D   T+ VG N VGKTN++EA+  L+ G  FR+ S +++ R G+
Sbjct: 8   LSVVQYRSFAEYALRLDPHVTVLVGRNAVGKTNLVEALQLLTAGSSFRKPSSSELLRQGA 67

Query: 70  PSFFSTFARVEGMEGLADISIKLE------TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           P+  +    +EG     ++ ++L       TR+ +      +  V+  V+          
Sbjct: 68  PAGRARLL-LEGEGRRLEMGLELAEGKRSFTRNGKRTTASGVRGVLPSVL---------- 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +    +D +    S  RR  LD     ++ ++ + +  +ER +  RN LL +    +   
Sbjct: 117 FCPDDLDMVKRSASA-RRAALDSFGVQLNDQYAKLLSTYERTVEQRNNLLRD-CPPADLL 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFC 241
              +  +A  G ++ + R  ++  +    +E V +   PH    ++    L G+      
Sbjct: 175 EVWDESLAVTGAQLLMHRRALLARIRGHFVE-VYRAIAPHETPDVAYESTL-GELGDERE 232

Query: 242 ALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
           A+ E++ ++L   R+ D + R  TL+GPHR D I    D       GS G+Q+ +++   
Sbjct: 233 AIAEQFRRELL-ARRADELRRGMTLVGPHR-DEIAFTIDGRAARDFGSQGQQRSIVLAWK 290

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           +A  ++  +  G  P+LLLD++ + LD  +R A+   V D   Q  +T T+   F
Sbjct: 291 IAEVQVTRDILGRPPLLLLDDVMSELDASRREAIMGFVAD-DIQTVITTTNLGYF 344


>gi|333025716|ref|ZP_08453780.1| putative recombination protein F [Streptomyces sp. Tu6071]
 gi|332745568|gb|EGJ76009.1| putative recombination protein F [Streptomyces sp. Tu6071]
          Length = 413

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 158/375 (42%), Gaps = 45/375 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y    +  +   T FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 27  MHVTHLSLADFRSYERAEVSLEPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 86

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+      F R    +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 87  VRAGA---ERAFVRAAVTQGERSQLVELEINPGRANRARINRSSQVRPRDVLGI-VRTVL 142

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 143 FAPEDLALVKGDPGERRRFLDELLTARHPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 202

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHI---KLSLT 229
              D S     +  +A  G ++   R ++I AL  L+    E +     P +   + S  
Sbjct: 203 RTLDLSTLDIWDQHLARAGAELLAQRTDLIAALQPLVDKSYEQLAPGGGPALLEYRPSAP 262

Query: 230 GFLDGK---FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           G   G+   + Q   AL E         RK +     TL+GPHR DL++   D      +
Sbjct: 263 GTAQGREEFYAQLLAALGEV--------RKQEIERGVTLVGPHRDDLLLKLGDLPAK-GY 313

Query: 287 GSTGEQKVVLVGIFLAHARLI-------------SNTTGFAPILLLDEISAHLDEDKRNA 333
            S GE     + + LA   L+                    P+L+LD++ A LD  +R+ 
Sbjct: 314 ASHGESWSYALALRLASYDLLRAEPWAPQTAPGPEGQRSGEPVLILDDVFAELDARRRDR 373

Query: 334 LFRIVTDIGSQIFMT 348
           L   V   G Q+ +T
Sbjct: 374 LAEHVAP-GEQVLVT 387


>gi|296328804|ref|ZP_06871318.1| DNA replication and repair protein RecF [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296154139|gb|EFG94943.1| DNA replication and repair protein RecF [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 369

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 164/353 (46%), Gaps = 14/353 (3%)

Query: 7   IKFLNIS--EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K  NIS   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++
Sbjct: 1   MKISNISYFNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123
            +     F S+   +   + +A+  I +  ++    +     N   I   D   K + I 
Sbjct: 61  IKYNFDEFISS---ISYQDYIANNKISVRFKNIAGAKKEFFFNKKRISQTDFYGK-INII 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
             +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   
Sbjct: 117 AYIPEDIILINGSPKHRRDFFDIEISQIDKEYLTNLKNYDKLLKIRNKYLKENKRNSEEF 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFC 241
           +  E +  +    I   R+E + +LS ++ ++Y +  N    + L     LD     +  
Sbjct: 177 AIYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKVTIE 236

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGI 299
            ++E   +++   +  +   + +L+GPH+ D   +++  +  I+    S GE+K ++  +
Sbjct: 237 MIQESLKREISQKKYQEDRYKFSLVGPHKDDYKFLLNGHEAKIS---ASQGEKKSIIFSL 293

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            L+   +I       P++++D+I+++ DED+R ++         Q+ ++ TDK
Sbjct: 294 KLSEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346


>gi|240172093|ref|ZP_04750752.1| recombination protein F [Mycobacterium kansasii ATCC 12478]
          Length = 388

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 163/369 (44%), Gaps = 39/369 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A   L      T+FVG NG GKTN++EA+ + S     R  + A + R
Sbjct: 3   VRHLGLRDFRSWAHADLELHPGRTVFVGPNGFGKTNLIEALWYSSTLGSHRVGTDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    +G E     ++ LE    R+ +  ++N   +R   E+   LR    
Sbjct: 63  AGADRAVISTIVVSDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVVGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   +RRR+LD +     P       D+++++R R  LL            
Sbjct: 118 APEDLALVRGDPADRRRYLDDLATVRRPAVAAVRADYDKVLRQRTALLKSVAGARYRGDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLT 229
           G  D+      ++++AE G ++  AR+++++ L+  + +  Q      +      + S+T
Sbjct: 178 GVLDT--LDVWDSRLAEHGAELMAARMDLVSQLAPEVAKAYQLLAPESRTASIEYRASMT 235

Query: 230 GFL------DGKFDQSFCALKEEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKA 281
             +      DG  D+ +     E         + D+   R   L+GPHR DL +   D+ 
Sbjct: 236 SVVPGSDEPDGTADRGYL----EARLLAALAARRDAEVERGVCLVGPHRDDLELRLGDQP 291

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
                 S GE   + V + LA   L+    G  P+LLLD++ A LD  +R AL   V + 
Sbjct: 292 AK-GFASHGESWSMAVALRLAAYELL-RVEGSDPVLLLDDVFAELDTRRRRALAS-VAES 348

Query: 342 GSQIFMTGT 350
             Q+ +T  
Sbjct: 349 AEQVVVTAA 357


>gi|218261320|ref|ZP_03476188.1| hypothetical protein PRABACTJOHN_01854 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224101|gb|EEC96751.1| hypothetical protein PRABACTJOHN_01854 [Parabacteroides johnsonii
           DSM 18315]
          Length = 367

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 161/365 (44%), Gaps = 38/365 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+I  ++N     + F      F G+NG+GKTN+L+A+ +LS  +          + 
Sbjct: 3   LKKLSILNYKNILQAEVSFSPDINCFFGNNGMGKTNLLDAVHYLSFCK----------SH 52

Query: 67  IGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKH 119
           I +P     +    +  ++G  D     E R++     ++           +  D+L++H
Sbjct: 53  INTPDSQLINNGQDMCVLQGNYD----YEGREEEIFCAIRRRQRKQFKRNKKEYDKLSEH 108

Query: 120 LRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           + +  LV   P+   +  G S ERRRFLD ++   D  +   +I + + +  RN LL + 
Sbjct: 109 IGLLPLVMVSPADSELIQGGSEERRRFLDVIISQQDKPYLHALIQYNKALLQRNSLLKDQ 168

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDG 234
             D+S    +E Q+   G  +   R  ++N    +  EY Q    +   + L     L+ 
Sbjct: 169 CTDASLYEVLEMQLDMYGRMVYEKRQMLVNDFIPIFNEYYQTICRSTEQVGLRYISQLE- 227

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                    K   +  L   R+ D +   T  G H+ +L +   D  I    GS G+ K 
Sbjct: 228 ---------KGNLSDMLAANRERDRILGYTSTGIHKDELEMTLNDYLIRRV-GSQGQNKT 277

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353
            L+ + LA    +S      PILLLD+I   LD D+   + ++V+ D   QIF+T T++ 
Sbjct: 278 YLIALKLAQYVFLSRRGQACPILLLDDIFDKLDADRVEQIVKLVSGDQFGQIFITDTNRK 337

Query: 354 VFDSL 358
             D++
Sbjct: 338 YLDAI 342


>gi|19705418|ref|NP_602913.1| RECF protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19713411|gb|AAL94212.1| RECF protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 369

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 164/353 (46%), Gaps = 14/353 (3%)

Query: 7   IKFLNIS--EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K  NIS   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++
Sbjct: 1   MKISNISYFNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123
            +     F S+   +   + +A+  I +  ++    +     N   I   D   K + I 
Sbjct: 61  IKYNFDEFISS---ISYQDYIANNKISVRFKNIAGAKKEFFFNKKRISQTDFYGK-INII 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
             +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   
Sbjct: 117 AYIPEDIILINGSPKHRRDFFDIEISQIDKEYLTNLKNYDKLLKIRNKYLKENKRNSEEF 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQSFC 241
           +  E +  +    I   R+E + +LS ++ ++Y +  N    + L     LD     +  
Sbjct: 177 AIYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKVTIE 236

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGI 299
            ++E   +++   +  +   + +L+GPH+ D   +++  +  I+    S GE+K ++  +
Sbjct: 237 MIQESLKREISQKKYQEDKYKFSLVGPHKDDYKFLLNGHEAKIS---ASQGEKKSIIFSL 293

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            L+   +I       P++++D+I+++ DED+R ++         Q+ ++ TDK
Sbjct: 294 KLSEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK 346


>gi|229530200|ref|ZP_04419589.1| DNA recombination and repair protein RecF [Vibrio cholerae
           12129(1)]
 gi|229332333|gb|EEN97820.1| DNA recombination and repair protein RecF [Vibrio cholerae
           12129(1)]
          Length = 363

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 169/366 (46%), Gaps = 20/366 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +   
Sbjct: 6   LMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65

Query: 70  PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              F    R+      +D   + + +  + D S   ++I     + + +L + L +  + 
Sbjct: 66  SELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184
           P    + +    +RR F+D  VF  +P        F+RL + RN LL   + Y + S+  
Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I+  R   +N L S + E + +   P   + L  +   + DQ + ++ 
Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKS-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  ++       D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++K
Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351

Query: 364 FMRISN 369
              +++
Sbjct: 352 TFHVAH 357


>gi|328951554|ref|YP_004368889.1| DNA replication and repair protein recF [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451878|gb|AEB12779.1| DNA replication and repair protein recF [Marinithermus
           hydrothermalis DSM 14884]
          Length = 343

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 154/341 (45%), Gaps = 25/341 (7%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN  S  L         VG N  GKTN+LEA+ +L+ G G  R + ++  R G      
Sbjct: 11  FRNLRSSELTLAGGPLAVVGANAQGKTNLLEAL-YLALG-GEVRGALSERVRFGEREA-Q 67

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            FA  E   G     ++ E R   + R +++N+     + EL ++    W+ P    +  
Sbjct: 68  LFAEAETELG----RVRFEHRFGPAGREVKVNEAPA-SLRELAEYPGAVWVRPEDTALVL 122

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           G   ERRR++D ++     R+R  +  +ER +R RN LL +G    +  ++   ++A  G
Sbjct: 123 GGPEERRRWMDLLLTRFSARYRSLLSAYERALRQRNALL-KGQGRLAGLAAWNQKLATYG 181

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSL--TGFLDGKFDQSFCALKEEYAKKLF 252
            +I   R  ++  L  L  E  ++     ++L+L  T   +G  +     L+EE  +   
Sbjct: 182 SEILQLRRRLLTRLEPLAQEAYRELAPGTLELALRETVTPEGYLEALETHLQEELERGA- 240

Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
                      TL GPHR DL +   +        S GE + + + + LA  RL+    G
Sbjct: 241 -----------TLFGPHRDDLKL-LLNGLEAPQFASRGEARAIALALRLAEHRLLWTHHG 288

Query: 313 FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            AP+LL+D+ +A LD  +R AL      +  Q  +TGTD  
Sbjct: 289 EAPVLLVDDFTAELDARRRTALLAYAQAL-PQAILTGTDPP 328


>gi|145218825|ref|YP_001129534.1| DNA replication and repair protein RecF [Prosthecochloris
           vibrioformis DSM 265]
 gi|189039632|sp|A4SC23|RECF_PROVI RecName: Full=DNA replication and repair protein recF
 gi|145204989|gb|ABP36032.1| DNA replication and repair protein RecF [Chlorobium phaeovibrioides
           DSM 265]
          Length = 371

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 153/357 (42%), Gaps = 19/357 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ +    FRN+ S     +    +  G NG GKT+ILE I + +  +GF  A+  + 
Sbjct: 1   MRLRSIQFENFRNHRSFSFEPEDGINLIYGQNGSGKTSILEGIHYCALTKGFVSAADGEC 60

Query: 65  TRIGSPSFFST--FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
               +  F  T  F    G+E    +S   E     S + LQI+   ++        +  
Sbjct: 61  LSFSAGYFLLTALFESSSGIETAVRLSYTKE-----SGKKLQIDGNELKPFSLHIGSIPC 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYF 178
               P    I SG   ERRRFLD  V   D R+   ++ + RL++ RN LL +       
Sbjct: 116 ISFSPPEIVIVSGPPGERRRFLDNAVCQSDRRYLDNLLIYRRLLQQRNALLQQLSQSPGK 175

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMI---NALSSLIMEYVQKENFPHIKL-SLTGFLDG 234
           D S        +A     +   RV  +   +    L+   +     P I+  S  G L  
Sbjct: 176 DRSMLQLWSENLASSAASVTAGRVRFLAEFHPFVELLHRDLSGGQMPSIEYRSTIGRLLE 235

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
              +S   L+E + ++  +  + + +  +TL GPHR +LI    D   +  + S G+Q+ 
Sbjct: 236 PVPES--ELRERFLQRFQENEQQEILRGQTLSGPHRDELIF-LSDGRESKRYSSQGQQRT 292

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            L+ + LA  +  +   G  PI LLD+I + LD  +  A+  I+   G Q  ++  D
Sbjct: 293 FLISLKLALFQYFNEKIGETPICLLDDIFSELDGKRTAAVLDILEGCG-QTLISSAD 348


>gi|332533698|ref|ZP_08409557.1| DNA recombination and repair protein RecF [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036862|gb|EGI73323.1| DNA recombination and repair protein RecF [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 364

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 151/344 (43%), Gaps = 19/344 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRN  +L L       I  G+NG GKT++LEAI +LS G+ FR   +  +
Sbjct: 1   MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTPKHKSI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123
                  F      + G + + D+SI +     ++    L+I     R + EL + + + 
Sbjct: 61  IAHQQEQFV-----IHGRKTIHDLSIPIGISKTQTGETNLKIQGKASRRISELAQLMPVQ 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDS 180
            + P    +F G   ERR+FLD  +F ++         F ++++ RN LL    + YFD 
Sbjct: 116 IITPESYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKTKPKNYFDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + +   L  +IN  R+  I+       + +  E      L+L   L+  F   +
Sbjct: 176 --IKFWDKEFVRLAEEINKLRLAYISRFKQQFFDKMCAE------LTLVRDLEMTFSAGW 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E  A  L    + D+    T  GPH++D        ++     S G+ K++L  + 
Sbjct: 228 KE-TESLADALEQNFERDARQGFTSKGPHKADFSFSVAGNSVENTF-SRGQLKLLLYALK 285

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
           +    LI + T    ILL+D++ + L ED +  + +++    SQ
Sbjct: 286 VTQNSLIESETDKQSILLIDDLPSELGEDTKEKVGQLLAHCSSQ 329


>gi|226952832|ref|ZP_03823296.1| DNA replication and repair protein RecF [Acinetobacter sp. ATCC
           27244]
 gi|294648700|ref|ZP_06726160.1| DNA replication and repair family protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226836453|gb|EEH68836.1| DNA replication and repair protein RecF [Acinetobacter sp. ATCC
           27244]
 gi|292825375|gb|EFF84118.1| DNA replication and repair family protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 364

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 160/364 (43%), Gaps = 28/364 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASY 61
           ++I  LNI   RN  ++ L       IF G NG GKT+ILE+I  L+ GR FR      Y
Sbjct: 1   MQITRLNIERVRNLKTVALTELQPFNIFYGANGSGKTSILESIHLLATGRSFRTHIPKHY 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                  +  F  +     GM  LA              + ++IN   I    +L K L 
Sbjct: 61  IQYEADDAIVFAQSVHERMGMRKLAS-----------GEQLIKINGDTIATQGQLAKRLP 109

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDS 180
           +  L P    I    +  RR+ LD ++F ++P        + R ++ RN LL T      
Sbjct: 110 LQHLDPQSTDIIDQGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNSLLKTRRNLTL 169

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +        +++ G  ++  RV ++   +    E + K+  P I++ L        +Q  
Sbjct: 170 ADLEPWNKMLSDYGEILHSQRVGILEQWNLFFKEDL-KQLLPDIEIELEYHAGFHTEQGL 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI--TIAHG-STGEQKVVLV 297
                   + L    + D   R T  GPHR+DL +     A+    AH  S G++K++++
Sbjct: 229 L-------QDLVQQHQKDLDRRYTEYGPHRADLRLKTKGDAMRSDAAHVLSRGQKKLLIM 281

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFD 356
            + L+   ++ + +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D  SV  
Sbjct: 282 ALKLSQIAML-HASNKETVVLLDDLTAELDLAAQQRLMERLSQLGSQVFMTTLDHTSVLK 340

Query: 357 SLNE 360
            L++
Sbjct: 341 HLHD 344


>gi|126651998|ref|ZP_01724190.1| recombination protein F [Bacillus sp. B14905]
 gi|126591267|gb|EAZ85376.1| recombination protein F [Bacillus sp. B14905]
          Length = 371

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 166/369 (44%), Gaps = 47/369 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + ++ +RNY +L L F  +  +F+G+N  GKTN++E+I  L+  +  R  +  ++
Sbjct: 1   MHIEQIKLTNYRNYDALALNFSPKINVFIGENAQGKTNVMESIYVLAMAKSHRTTNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     + S + ++EG        + +E    +  +  +IN +    +      + +  
Sbjct: 61  IR-----WDSDYGKIEGAVQKRHGILPIELTITKKGKKGKINHIEQSRLSHYIGQMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RRRF+D  +  I P +   ++ F+++++ RN  L           
Sbjct: 116 FAPEDLNVVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKVLKQRNHFLKMN-------- 167

Query: 185 SIEAQMAELGVKINIARVEMINALSSLI------MEYVQKENFP-HIKLSLTGFLDGKFD 237
             + +     V   +   + I+A + +I      M+ +Q+   P H      G   GK  
Sbjct: 168 --QGKSMSNDVMYEVYNEQYIHAATQIIRKRFQFMDLLQEWAEPIH-----AGISQGKET 220

Query: 238 -----QSFCALKEEYA---------KKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKA 281
                ++   +++E++         +KL + R+ +     TL+GPHR DL  +V+  D  
Sbjct: 221 LVIKYRTVAGIEKEHSSSEIENTLHQKLMEAREREFDRGVTLVGPHRDDLQFLVNGYD-- 278

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               +GS G+Q+   + + LA   LI   T   PILLLD++ + LD+ +++ L   +   
Sbjct: 279 -VQTYGSQGQQRTTALSLKLAEIELIKQETNETPILLLDDVLSELDDYRQSHLLNTIQG- 336

Query: 342 GSQIFMTGT 350
             Q F+T T
Sbjct: 337 EVQTFVTTT 345


>gi|227543722|ref|ZP_03973771.1| recombination protein F [Lactobacillus reuteri CF48-3A]
 gi|300908787|ref|ZP_07126250.1| recombination protein F [Lactobacillus reuteri SD2112]
 gi|77745333|gb|ABB02567.1| recombinational DNA repair ATPase [Lactobacillus reuteri]
 gi|227186290|gb|EEI66361.1| recombination protein F [Lactobacillus reuteri CF48-3A]
 gi|300894194|gb|EFK87552.1| recombination protein F [Lactobacillus reuteri SD2112]
          Length = 374

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 149/352 (42%), Gaps = 17/352 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  FRNY  L + F+    + +G N  GKTN+LEAI  LS  +  R ++  ++     
Sbjct: 6   LHLHHFRNYQDLTVHFNPGVNVLIGHNAQGKTNMLEAIYVLSLTKSHRTSNDHELINWQE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            S     A + G    +   I LE +     +  ++N +    + +    L      P  
Sbjct: 66  KS-----ALISGTVEKSIGKIPLELQFSSKGKKAKVNHLEQARLSQYVGQLNAILFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSS 185
             +  G    RR F+DR    +  ++      +  L+R +N+ L +  +    D      
Sbjct: 121 LSLVKGSPALRRHFMDREFSQMSSKYLYNAGQYRTLLRQKNKYLKQLKYKQQTDRVLLGV 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +  Q+A  G ++ IAR   +  L     +  Q+ +     L L      K +    A  E
Sbjct: 181 LSDQLAAFGAEVIIARQYFLKHLEGWAADLHQEISLNKESLQLEYVNQLKVNDETTA--E 238

Query: 246 EYAKKLF----DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           E  + LF    D  + +     T+ GPHR D+     DK +  A GS G+Q+   + + L
Sbjct: 239 EAYQALFKLYQDNEQREIEQGTTIYGPHRDDIRFLVNDKNVQ-AFGSQGQQRTTALSVKL 297

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           A   L+   TG  P+LLLD++ + LD  ++  L   + +   Q F+T T  S
Sbjct: 298 AEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAIQN-KVQTFLTTTSLS 348


>gi|255023617|ref|ZP_05295603.1| recombination protein F [Listeria monocytogenes FSL J1-208]
          Length = 317

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 141/330 (42%), Gaps = 45/330 (13%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       S+ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQM 190
           G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q 
Sbjct: 126 GAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQF 185

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY-AK 249
           A++ + +   R + I  L                  +    +  +  +    LK EY A 
Sbjct: 186 ADVAINLTKRRADFIQKLE-----------------AYAAPIHHQISRGLETLKIEYKAS 228

Query: 250 KLFDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
              +G           +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q
Sbjct: 229 VTLNGDNPDVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQ 287

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEI 322
           +   + I LA   LI   TG  P+LLLD++
Sbjct: 288 RTTALSIKLAEIDLIHEETGEYPVLLLDDV 317


>gi|325285177|ref|YP_004260967.1| DNA replication and repair protein recF [Cellulophaga lytica DSM
           7489]
 gi|324320631|gb|ADY28096.1| DNA replication and repair protein recF [Cellulophaga lytica DSM
           7489]
          Length = 359

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 170/383 (44%), Gaps = 48/383 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N+ S    FDA+   FVG NGVGKTNIL+AI  LS G+ +     +   +
Sbjct: 3   LKKLSLVNYKNFDSKEFDFDAKINCFVGSNGVGKTNILDAIYHLSFGKSYFNPIASQNIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121
            G   F      V+G+    D       R+++ +  L+     +     +  D+ + H+ 
Sbjct: 63  HGEDFFV-----VDGLFFKND-------REEKIICSLKKGAKKVIKKNGKAYDKFSDHIG 110

Query: 122 ISWLV---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---- 173
              LV   P+  D I  G S  RR+F+D ++   +  +   ++ + +++  RN LL    
Sbjct: 111 FLPLVIISPADRDLILEG-SDTRRKFIDGVISQSNKEYLTALLKYNKILLQRNSLLKYFA 169

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
               FD +  S    Q+ E G  I+  RV  +N            E  P  K        
Sbjct: 170 VNHTFDKTTLSVYNEQLQEYGTIIHKERVAFLN------------EFIPIFKEQYAAISG 217

Query: 234 GKFDQSFC----ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           GK D +       L ++  +   +  + D   + T +G H+ DL  +  +  +    GS 
Sbjct: 218 GKEDVTITYNSKLLDKDLLQLFNESLEKDRAVQYTTVGTHKDDLSFEINNYPVK-KFGSQ 276

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMT 348
           G+QK  L+ + LA    I       PILLLD+I   LDE++   +  +V D    QIF++
Sbjct: 277 GQQKSFLIALKLAQFNFIKAQAKTTPILLLDDIFDKLDENRVAQIVSLVDDDNFGQIFIS 336

Query: 349 GTD----KSVFDSLNETAKFMRI 367
            T     ++V  +++++ K  +I
Sbjct: 337 DTHADRTENVVKNIHQSYKIFKI 359


>gi|302520519|ref|ZP_07272861.1| recombination protein F [Streptomyces sp. SPB78]
 gi|318058968|ref|ZP_07977691.1| recombination protein F [Streptomyces sp. SA3_actG]
 gi|302429414|gb|EFL01230.1| recombination protein F [Streptomyces sp. SPB78]
          Length = 387

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 158/375 (42%), Gaps = 45/375 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y    +  +   T FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYERAEVSLEPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+      F R    +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRAGA---ERAFVRAAVTQGERSQLVELEINPGRANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARHPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHI---KLSLT 229
              D S     +  +A  G ++   R ++I AL  L+    E +     P +   + S  
Sbjct: 177 RTLDLSTLDIWDQHLARAGAELLARRTDLIAALQPLVDKTYEQLAPGGGPALLEYRPSAP 236

Query: 230 GFLDGK---FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           G   G+   + Q   AL E         RK +     TL+GPHR DL++   D      +
Sbjct: 237 GTAQGREEFYAQLLAALGEV--------RKQEIERGVTLVGPHRDDLLLKLGDLPAK-GY 287

Query: 287 GSTGEQKVVLVGIFLAHARLI-------------SNTTGFAPILLLDEISAHLDEDKRNA 333
            S GE     + + LA   L+                    P+L+LD++ A LD  +R+ 
Sbjct: 288 ASHGESWSYALALRLASYDLLRAEPWAPQTAPGPEGQRSGEPVLILDDVFAELDARRRDR 347

Query: 334 LFRIVTDIGSQIFMT 348
           L   V   G Q+ +T
Sbjct: 348 LAEHVAS-GEQVLVT 361


>gi|296127873|ref|YP_003635123.1| DNA replication and repair protein RecF [Cellulomonas flavigena DSM
           20109]
 gi|296019688|gb|ADG72924.1| DNA replication and repair protein RecF [Cellulomonas flavigena DSM
           20109]
          Length = 398

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 161/385 (41%), Gaps = 59/385 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++++FR+Y  + L  +   T  VG NG GKTN++EA+ +++     R  S A + R
Sbjct: 3   VAHLSLTDFRSYPQVELPLEPGITALVGPNGQGKTNLVEAVGYVATLGSHRVPSDAALVR 62

Query: 67  IGSPSFF----------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            G+              ST   VE   G A+ S        R+   L I           
Sbjct: 63  AGTSRAVVRAKVVREERSTLVEVEITPGKANRSRVNGGSPGRARDVLGI----------- 111

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR------- 169
              LR     P    +  G    RRRFLD ++  + PR    + D+ER++R R       
Sbjct: 112 ---LRTVLFAPEDLALVKGDPDGRRRFLDELLVQLTPRIAGVLGDYERVLRQRSALLKSA 168

Query: 170 -NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
                     D       +A++A+ G ++ +AR  ++ AL     +  ++ +    +L L
Sbjct: 169 AAATRARAGADLRTLDVWDAKLAQTGAQVVVARQALVRALQPRAADAYRQVSAGQGELVL 228

Query: 229 T--GFLDGKFDQSFCAL--KEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIV 275
           T    LD   D++  AL    +   +L + R +D+M R           L+GPHR DL++
Sbjct: 229 TYRSSLDAALDEAPDALTGAPDVGVELVEARLLDAMGRLRGKEIERGVCLVGPHRDDLVL 288

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA------------PILLLDEIS 323
           +         + S GE   V + + LA   L+++    A            P+L+LD++ 
Sbjct: 289 ELGGLPAK-GYASHGESWSVALALRLASYGLLTHGVDDAGAWSADWGPDGEPVLILDDVF 347

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMT 348
           A LD  +R  L  +V     Q+ +T
Sbjct: 348 AELDARRRERLAELVAP-ARQVLVT 371


>gi|169825625|ref|YP_001695783.1| hypothetical protein Bsph_0007 [Lysinibacillus sphaericus C3-41]
 gi|226737813|sp|B1HS35|RECF_LYSSC RecName: Full=DNA replication and repair protein recF
 gi|168990113|gb|ACA37653.1| RecF [Lysinibacillus sphaericus C3-41]
          Length = 371

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 166/369 (44%), Gaps = 47/369 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + ++ +RNY +L L F  +  +F+G+N  GKTN++E+I  L+  +  R  +  ++
Sbjct: 1   MHIEQIKLTNYRNYDALALNFSPKINVFIGENAQGKTNVMESIYVLAMAKSHRTTNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     + S + ++EG        + +E    +  +  +IN +    +      + +  
Sbjct: 61  IR-----WDSDYGKIEGAVQKRHGILPIELTITKKGKKGKINHIEQSRLSHYIGQMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RRRF+D  +  I P +   ++ F+++++ RN  L           
Sbjct: 116 FAPEDLNVVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKVLKQRNHFLKMN-------- 167

Query: 185 SIEAQMAELGVKINIARVEMINALSSLI------MEYVQKENFP-HIKLSLTGFLDGKFD 237
             + +     V   +   + I+A + +I      M+ +Q+   P H      G   GK  
Sbjct: 168 --QGKSMSNDVMYEVYNEQYIHAATQIIRKRFQFMDLLQEWAEPIH-----AGISQGKET 220

Query: 238 -----QSFCALKEEYA---------KKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKA 281
                ++   +++E++         +KL + R+ +     TL+GPHR DL  +V+  D  
Sbjct: 221 LIIKYRTVAGIEKEHSSSEIENTLHQKLMEAREREFDRGVTLVGPHRDDLQFLVNGYD-- 278

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               +GS G+Q+   + + LA   LI   T   PILLLD++ + LD+ +++ L   +   
Sbjct: 279 -VQTYGSQGQQRTTALSLKLAEIELIKQETNETPILLLDDVLSELDDYRQSHLLNTIQG- 336

Query: 342 GSQIFMTGT 350
             Q F+T T
Sbjct: 337 EVQTFVTTT 345


>gi|328472402|gb|EGF43269.1| DNA replication and repair protein recF [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 341

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 148/326 (45%), Gaps = 23/326 (7%)

Query: 36  NGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETR 95
           N  GKTN+LEAI  L+  R  R  +  ++ R GS      FARV G       + +LE  
Sbjct: 6   NAQGKTNLLEAIYVLALARSHRTNNDKELIRFGSD-----FARVSGQISRQSGTHQLELI 60

Query: 96  DDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
                +  +I+ +    + +   H  +    P    I  G    RRRF+D     + P++
Sbjct: 61  ISHQGKRARIDRIEQSKLSQYLGHFNVILFAPEDLAIVKGSPAGRRRFIDMEFGQMSPKY 120

Query: 156 RRRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
              +  ++  ++ RN  L +  +    D  +   +   +A  G ++  AR +++  +S  
Sbjct: 121 LYNLSQYKTFLKQRNAYLKQLKYHQAKDLVYLDVLTDSLAAFGAELITARAKLLQTMSDY 180

Query: 212 -------IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
                  I +  +K  F + +  +   L    +Q + AL   +AK+    R+++  +  +
Sbjct: 181 AATIQQDITKGREKLQFAY-QTQVAADLRQDSEQVYEALGALFAKQ--QSREIEQGT--S 235

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
           L+GPHR D++    DK +    GS G+Q+   + + LA   L+ + TG  P+LLLD++ +
Sbjct: 236 LVGPHRDDVLFIVNDKDVA-NFGSQGQQRTTALAVKLAEIDLMKDQTGEYPVLLLDDVLS 294

Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGT 350
            LD  ++  L + +     Q F+T T
Sbjct: 295 ELDAIRQTHLLKAI-QTKVQTFLTTT 319


>gi|86142885|ref|ZP_01061307.1| DNA replication and repair protein RecF, ABC family ATPase
           [Leeuwenhoekiella blandensis MED217]
 gi|85830330|gb|EAQ48789.1| DNA replication and repair protein RecF, ABC family ATPase
           [Leeuwenhoekiella blandensis MED217]
          Length = 359

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 174/382 (45%), Gaps = 46/382 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N+ S+    DA+   FVG+NGVGKTN+L+A+  LS G+     SY +   
Sbjct: 3   LKALSLINYKNFESISFDLDAKINCFVGNNGVGKTNVLDAVYHLSFGK-----SYFNPIT 57

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISWL 125
             + +  + F  ++G+    D   K+     R   + ++ N    ++ +  + H+    L
Sbjct: 58  TQNINHDADFFVIDGIYDKNDREEKVIVSAKRGQKKVIKRNG---KIYERFSDHIGFLPL 114

Query: 126 V---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           V   P+  D I  G S  RR+F+D ++   D  +   +I + +++  RN LL   YF+++
Sbjct: 115 VIISPADRDLIIEG-SETRRKFMDGVISQSDKAYLDTLIKYNKILSQRNALLK--YFNAN 171

Query: 182 WCSSIEA------QMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTG 230
              + +       QM ELG  +   R + +   + +  +        KE    +KL    
Sbjct: 172 HTFNPDTLAIYNEQMHELGTSLYKKRKQFLEDFTPIFKKRYAAISGDKE---EVKLKYKS 228

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            L+   D     L EE  KK       D   + T +G HR DL        I    GS G
Sbjct: 229 QLN---DAPLNQLFEENLKK-------DRALQYTSVGTHRDDLNFKIESHPIK-KFGSQG 277

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTG 349
           +QK  L+ + LA    I   +   PILLLD+I   LDE +   +  +V D    Q+F++ 
Sbjct: 278 QQKSYLIALKLAQFDFIKAQSNTTPILLLDDIFDKLDESRVTQIIDLVNDDNFGQLFISD 337

Query: 350 TD----KSVFDSLNETAKFMRI 367
           T     +++   +++T K  ++
Sbjct: 338 THADRTEAIVKEIHQTYKLFKL 359


>gi|193063850|ref|ZP_03044937.1| DNA replication and repair protein RecF [Escherichia coli E22]
 gi|194428115|ref|ZP_03060659.1| DNA replication and repair protein RecF [Escherichia coli B171]
 gi|209921177|ref|YP_002295261.1| recombination protein F [Escherichia coli SE11]
 gi|260846515|ref|YP_003224293.1| gap repair protein RecF [Escherichia coli O103:H2 str. 12009]
 gi|226737795|sp|B6I3T3|RECF_ECOSE RecName: Full=DNA replication and repair protein recF
 gi|192930565|gb|EDV83172.1| DNA replication and repair protein RecF [Escherichia coli E22]
 gi|194413873|gb|EDX30151.1| DNA replication and repair protein RecF [Escherichia coli B171]
 gi|209914436|dbj|BAG79510.1| DNA replication and repair protein RecF [Escherichia coli SE11]
 gi|257761662|dbj|BAI33159.1| gap repair protein RecF [Escherichia coli O103:H2 str. 12009]
 gi|323161048|gb|EFZ46967.1| DNA replication and repair protein recF [Escherichia coli E128010]
 gi|324018432|gb|EGB87651.1| recombination protein F [Escherichia coli MS 117-3]
 gi|324115948|gb|EGC09874.1| DNA replication and repair protein RecF [Escherichia coli E1167]
          Length = 357

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R +    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELIPLAEQISTWRAQYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|170767070|ref|ZP_02901523.1| DNA replication and repair protein RecF [Escherichia albertii
           TW07627]
 gi|170124508|gb|EDS93439.1| DNA replication and repair protein RecF [Escherichia albertii
           TW07627]
          Length = 357

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQVGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|194467406|ref|ZP_03073393.1| DNA replication and repair protein RecF [Lactobacillus reuteri
           100-23]
 gi|194454442|gb|EDX43339.1| DNA replication and repair protein RecF [Lactobacillus reuteri
           100-23]
          Length = 374

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 154/358 (43%), Gaps = 29/358 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  FRNY  L + F+    + +G N  GKTN+LEAI  LS  +  R ++  ++     
Sbjct: 6   LHLHHFRNYQDLTVHFNPGVNVLIGHNAQGKTNMLEAIYVLSLTKSHRTSNDHELINWQE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            S     A + G    +   I LE +     +  ++N +    + +    L      P  
Sbjct: 66  KS-----ALISGTVEKSIGKIPLELQFSSKGKKAKVNHLEQARLSQYVGQLNAILFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSS 185
             +  G    RR F+DR    +  ++      +  L+R +N+ L +  +    D      
Sbjct: 121 LSLVKGSPALRRHFMDREFSQMSSKYLYNAGQYRTLLRQKNKYLKQLKYKQQTDRVLLGV 180

Query: 186 IEAQMAELGVKINIARVEMINALS----------SLIMEYVQKENFPHIKLSLTGFLDGK 235
           +  Q+A  G ++ IAR   +  L           SL  E ++ E    +K+S     D  
Sbjct: 181 LSDQLAAFGAEVIIARQHFLKHLEGWAADLHQEISLNKESLRLEYVNQLKVS----DDTT 236

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            ++++ AL + Y     D  + +     T+ GPHR D+     DK +  A GS G+Q+  
Sbjct: 237 VEEAYQALFKLYQ----DNEQREIEQGTTIYGPHRDDIRFLVNDKNVQ-AFGSQGQQRTT 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            + + LA   L+   TG  P+LLLD++ + LD  ++  L   + +   Q F+T T  S
Sbjct: 292 ALSVKLAEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAIQN-KVQTFLTTTSLS 348


>gi|332884241|gb|EGK04509.1| hypothetical protein HMPREF9456_00836 [Dysgonomonas mossii DSM
           22836]
          Length = 369

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 156/353 (44%), Gaps = 19/353 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  ++N     L    +   F+G NG+GKTN+L+AI +LS  +       +   R  +
Sbjct: 6   LSILNYKNIEQAELNLSPKINCFLGSNGMGKTNLLDAIYYLSFCKSHNNPIDSQNIRHDA 65

Query: 70  PSFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
                 FA ++G   L D   +     R  +  +  +      R+ D +   L +  + P
Sbjct: 66  D-----FAVIQGWYVLGDKQEEFFCSLRRKQKKQFKRNKKEYERLSDHIG-FLPLIMVSP 119

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSI 186
           S   + +G S ERR+F+D  +   D  +   +I + + ++ RN LL T+ Y D +     
Sbjct: 120 SDTELINGGSDERRKFMDMFLSQFDKEYLHSLIRYNKALQQRNALLKTDSYIDETLFDLW 179

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + Q+ E G  I   R + I     +   +       + K+ L    +  FD +      +
Sbjct: 180 DEQLIEEGKIIYSKRKDFIEKFIPIFQRFYDFICLSNEKVELR--YESHFDDA------D 231

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           +A+ L   R+ D +   T IG H+ DL +     +I    GS G+ K  +V + LA    
Sbjct: 232 FARSLKQKRERDRILGYTSIGVHKDDLDMQMDGYSIKRV-GSQGQNKTYVVALKLAQFDF 290

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358
           +   T   P+LLLD+I   LD  +   + ++V D    QIF+T T++   D +
Sbjct: 291 LRKATETTPVLLLDDIFDKLDSTRVEQIVKLVLDKDFGQIFVTDTNREHLDEI 343


>gi|81301059|ref|YP_401267.1| recombination protein F [Synechococcus elongatus PCC 7942]
 gi|97181064|sp|Q31KY9|RECF_SYNE7 RecName: Full=DNA replication and repair protein recF
 gi|81169940|gb|ABB58280.1| DNA replication and repair protein RecF [Synechococcus elongatus
           PCC 7942]
          Length = 387

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 168/367 (45%), Gaps = 15/367 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  FRNY    + F A  TI +G+N  GKTN+LEA+   S  R  R +   D+ + G+
Sbjct: 6   LHLQHFRNYRDQTVQFQAPKTILLGENAQGKTNLLEAVELFSTLRSHRVSRDRDLVQTGA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            S   T A VE   G  +  ++++ +     R  +  +V+ R +D L     + +    +
Sbjct: 66  ESALLT-AVVERDSG--EQQLQIQLQQQGRRRVQRDGEVLRRQLDLLGSLCSVQFSSLDL 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSSIEA 188
           D +  G   +RR +LDR++  + P +      + R++R RN LL      D +  + +  
Sbjct: 123 DLVRGG-PQQRRDWLDRLLIQLQPIYAHLQQQYGRVLRQRNALLRRAESLDLALLAPLNW 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFDQSFCAL 243
           Q+A+LGV I   R   I  L  L   +      Q+E    I       L         A 
Sbjct: 182 QLAQLGVHIMRRRSRAIQRLVPLAAHWHREISGQREQL--IVAYQPSVLAPDDTDEAIAW 239

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E    ++   R  +   R +L+GPHR DL +        +   S G+Q+ +++ + LA 
Sbjct: 240 QERMLAQIEARRAAELGQRTSLVGPHRDDLNLSINGTEARL-QASQGQQRTLVLSLKLAE 298

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETA 362
             LI    G  P+LLLD++ A LD  ++  L   + +   Q  +T T  S FD S  ETA
Sbjct: 299 LELIEAVLGEPPLLLLDDVLAELDLRRQQQLLEAIAN-RFQTLITTTHLSAFDQSWVETA 357

Query: 363 KFMRISN 369
           + + + +
Sbjct: 358 QILTVQS 364


>gi|148543247|ref|YP_001270617.1| recombination protein F [Lactobacillus reuteri DSM 20016]
 gi|184152659|ref|YP_001841000.1| recombination protein F [Lactobacillus reuteri JCM 1112]
 gi|227364310|ref|ZP_03848403.1| recombination protein F [Lactobacillus reuteri MM2-3]
 gi|325683509|ref|ZP_08163025.1| recombination protein F [Lactobacillus reuteri MM4-1A]
 gi|166918724|sp|A5VHF6|RECF_LACRD RecName: Full=DNA replication and repair protein recF
 gi|226737809|sp|B2G4Y8|RECF_LACRJ RecName: Full=DNA replication and repair protein recF
 gi|148530281|gb|ABQ82280.1| DNA replication and repair protein RecF [Lactobacillus reuteri DSM
           20016]
 gi|183224003|dbj|BAG24520.1| DNA replication and repair protein RecF [Lactobacillus reuteri JCM
           1112]
 gi|227070623|gb|EEI08953.1| recombination protein F [Lactobacillus reuteri MM2-3]
 gi|324977859|gb|EGC14810.1| recombination protein F [Lactobacillus reuteri MM4-1A]
          Length = 374

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 154/358 (43%), Gaps = 29/358 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  FRNY  L + F+    + +G N  GKTN+LEAI  LS  +  R ++  ++     
Sbjct: 6   LHLHHFRNYQDLTVHFNPGVNVLIGHNAQGKTNMLEAIYVLSLTKSHRTSNDHELINWQE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            S     A + G    +   I LE +     +  ++N +    + +    L      P  
Sbjct: 66  KS-----ALISGTVEKSIGKIPLELQFSSKGKKAKVNHLEQARLSQYVGQLNAILFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSS 185
             +  G    RR F+DR    +  ++      +  L+R +N+ L +  +    D      
Sbjct: 121 LSLVKGSPALRRHFMDREFSQMSSKYLYNAGQYRTLLRQKNKYLKQLKYRQQTDRVLLGV 180

Query: 186 IEAQMAELGVKINIARVEMINALS----------SLIMEYVQKENFPHIKLSLTGFLDGK 235
           +  Q+A  G ++ IAR   +  L           SL  E ++ E    +K+S     D  
Sbjct: 181 LSDQLAAFGAEVIIARQHFLKHLEGWAADLHQEISLNKESLRLEYVNQLKVS----DDTT 236

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            ++++ AL + Y     D  + +     T+ GPHR D+     DK +  A GS G+Q+  
Sbjct: 237 VEEAYQALFKLYQ----DNEQREIEQGTTIYGPHRDDIRFLVNDKNVQ-AFGSQGQQRTT 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            + + LA   L+   TG  P+LLLD++ + LD  ++  L   + +   Q F+T T  S
Sbjct: 292 ALSVKLAEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAIQN-KVQTFLTTTSLS 348


>gi|209693645|ref|YP_002261573.1| recombination protein F [Aliivibrio salmonicida LFI1238]
 gi|226737766|sp|B6EP48|RECF_ALISL RecName: Full=DNA replication and repair protein recF
 gi|208007596|emb|CAQ77696.1| DNA replication and repair protein RecF [Aliivibrio salmonicida
           LFI1238]
          Length = 359

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 164/365 (44%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I++FRN  +  +         +G NG GKT++LEAI  L  GR F+ +    + R   
Sbjct: 6   LIINDFRNIETCDIQLSTGFNFVIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIRNSC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   E  E    + I +  + D +   ++I     + + +L K L +  + P
Sbjct: 66  DELFIHGRFTTPEQFE----LPIGINKQRDGTTE-VKIGGESGQKLAQLAKVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +     RR F+D  VF ++P         +RL + RN LL   + Y + S+   
Sbjct: 121 EGFELVTDGPKFRRAFIDWGVFHVEPAFYEAWSRVKRLTKQRNALLKTAQSYRELSYW-- 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++A L  KI+  RV+ IN +S    +  Q    P   + L+ +   + +  +     
Sbjct: 179 -DLELANLAEKIDQWRVDYINHISEATQQICQA-FLPEYDIKLSYYRGWERETPYA---- 232

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  K+ F+    D     T+ GP+++DL +      +     S G+ K+++  + LA  +
Sbjct: 233 ELLKRNFE---RDKQLGYTVGGPNKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L + +    +Q+F++  T + + D  +E +K 
Sbjct: 289 HLTEATGKQCIYLIDDFASELDSHRRQLLAQYLKQTKAQVFISSITAEQIADMHDEESKM 348

Query: 365 MRISN 369
             I +
Sbjct: 349 FEIEH 353


>gi|114561191|ref|YP_748704.1| DNA replication and repair protein RecF [Shewanella frigidimarina
           NCIMB 400]
 gi|122301223|sp|Q08A49|RECF_SHEFN RecName: Full=DNA replication and repair protein recF
 gi|114332484|gb|ABI69866.1| DNA replication and repair protein RecF [Shewanella frigidimarina
           NCIMB 400]
          Length = 360

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 167/363 (46%), Gaps = 27/363 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           +NI  FRN  S  L       +  G NG GKT+ILEAI FL  GR FR      V     
Sbjct: 6   INIGSFRNITSASLQPCDGLNLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIN-ND 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWLVP- 127
               + FA +      AD   K+  R  RS    ++I+   ++ +  L + L I  + P 
Sbjct: 65  DDKLTLFAHLID----ADRDCKIGLRRHRSGEIEVKIDGEKVKRLSTLAETLPIQVITPE 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
           S   +F G    RR+F+D   F  DP   +  ++  ++++ RN+LL     Y    +   
Sbjct: 121 SFSLLFEG-PKARRQFIDWGAFHSDPHFYQAWVNTRKVLKQRNQLLRNQSSYNQIQFWDK 179

Query: 186 IEAQMAELGVKINIARVEMINAL-SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
              + AE    I    V+ +N L   +I  ++ + +   IK+S T   D K D  F  L 
Sbjct: 180 ELVRYAEQVTDIRNQYVDSLNVLLKGIIGVFLPRID---IKVSFTRGWDSKTD--FAQLL 234

Query: 245 E-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           E +Y++ L  G         T  GPH++DL +   +     A  S G+ K+++  + +A 
Sbjct: 235 ENQYSRDLAAGN--------TGSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362
            +L+        I L+D++ + LD   R  L +++T+ G+QIF+T  D +++ DSL+   
Sbjct: 286 GKLLKQQLDKNSIYLVDDLPSELDAQHRQLLLQLLTETGAQIFVTAIDPQAIVDSLSSPP 345

Query: 363 KFM 365
             M
Sbjct: 346 NRM 348


>gi|54021967|ref|YP_116209.1| recombination protein F [Nocardia farcinica IFM 10152]
 gi|81680365|sp|Q5Z3Z6|RECF_NOCFA RecName: Full=DNA replication and repair protein recF
 gi|54013475|dbj|BAD54845.1| putative recombination and repair protein [Nocardia farcinica IFM
           10152]
          Length = 388

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 159/347 (45%), Gaps = 31/347 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++ +FR++  + L      T+F+G NG GKTN+LEA+ +L+     R ++ A + R
Sbjct: 3   VRALSLRDFRSWEHVELELSTGRTVFLGANGNGKTNLLEAVGYLATLGSHRVSADAPLIR 62

Query: 67  IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G     +  ARV    +    ++ I +E     + R  QIN   +R   E+   L+   
Sbjct: 63  SG-----AQRARVGANVVNAGRELRIDVELNQGSANRA-QINRSPVRRTREILGILQTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYF----- 178
             P    +  G   ERRRFLD +  A  PR      D++R++R R+ LL T G       
Sbjct: 117 FAPEDLALVRGDPGERRRFLDELCTARLPRLAGVRADYDRVLRQRSALLKTAGRHARSTA 176

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGK 235
           D S     +  +A     +   R+ +++ L   + E    +  E+ P      + +L G+
Sbjct: 177 DLSTLDVWDGHLAGHAAVLVAQRLRLVHDLFPYLAEAYRSLAPESRPAAIGYRSAYLPGE 236

Query: 236 F--------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           F        D    AL+E   ++L   R+ +      L+GPHR +L +   D   T A G
Sbjct: 237 FLDPARAPRDDDAAALEEIILRELAAARRKELERGVCLVGPHRDELELMLGD---TPAKG 293

Query: 288 --STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
             S GE     + + LA   L+ +T+   P+LLLD++ A LD  +R 
Sbjct: 294 FASHGESWSFALALRLASFDLLRSTSA-EPVLLLDDVFAELDRRRRT 339


>gi|154491038|ref|ZP_02030979.1| hypothetical protein PARMER_00957 [Parabacteroides merdae ATCC
           43184]
 gi|154088786|gb|EDN87830.1| hypothetical protein PARMER_00957 [Parabacteroides merdae ATCC
           43184]
          Length = 367

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 161/365 (44%), Gaps = 38/365 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+I  ++N     + F  +   F G+NG+GKTN+L+A+ +LS  +          + 
Sbjct: 3   LKKLSILNYKNILQAEVSFSPEINCFFGNNGMGKTNLLDAVHYLSFCK----------SH 52

Query: 67  IGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKH 119
           I +P     +    +  ++G  D     E R++     ++           +  D+L++H
Sbjct: 53  INTPDSQLINNGQDMCVLQGNYD----YEGREEEIFCAIRRRQRKQFKRNKKEYDKLSEH 108

Query: 120 LRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           + +  LV   P+   +  G S ERRRFLD ++   D  +   +I + + +  RN LL + 
Sbjct: 109 IGLLPLVMVSPADSELIQGGSEERRRFLDVIISQQDKPYLHALIQYNKALLQRNSLLKDQ 168

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDG 234
             D+S    +E Q+   G  +   R  ++N    +  EY Q    +   + L     L+ 
Sbjct: 169 CIDASLYEVLEMQLDMYGRMVYEKRQMLVNDFIPIFNEYYQTICRSTEQVGLRYISQLE- 227

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                    K   A  L   R+ D +   T  G H+ +L +      I    GS G+ K 
Sbjct: 228 ---------KGSLADMLAANRERDRILGYTSTGIHKDELEMTLNGHLIRRV-GSQGQNKT 277

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353
            L+ + LA    +S      PILLLD+I   LD D+   + ++V+ D   QIF+T T++ 
Sbjct: 278 YLIALKLAQYVFLSCRGQARPILLLDDIFDKLDADRVEQIVKLVSGDQFGQIFITDTNRK 337

Query: 354 VFDSL 358
             D++
Sbjct: 338 YLDAI 342


>gi|271498581|ref|YP_003331606.1| DNA replication and repair protein RecF [Dickeya dadantii Ech586]
 gi|270342136|gb|ACZ74901.1| DNA replication and repair protein RecF [Dickeya dadantii Ech586]
          Length = 361

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 154/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR    A V R   
Sbjct: 6   LLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     R+EG+E    + +      D +VR   I+      V EL + L I  + P  
Sbjct: 66  AEFI-LHGRIEGLERERAVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL+R RN  L +         + + +
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFSAWSNLKRLLRQRNAALRQ-VSHYGQLRAWDRE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L   I+  R E   A+++ I      +  P   LS + F  G   +S      +YA 
Sbjct: 181 LVPLAEGISRWRAEYSAAIAADIASTC-AQFLPEFSLSFS-FQRGWDKES------DYAD 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T +GPH++D  +     A+     S G+ K+++  + LA    ++ 
Sbjct: 233 LLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
             G   + L+D+ ++ LD  +R  L   +    +Q+F++  T + + D + E  K  R+ 
Sbjct: 292 QNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|56751857|ref|YP_172558.1| recombination protein F [Synechococcus elongatus PCC 6301]
 gi|81820589|sp|Q5N0Y2|RECF_SYNP6 RecName: Full=DNA replication and repair protein recF
 gi|56686816|dbj|BAD80038.1| DNA replication and repair protein RecF [Synechococcus elongatus
           PCC 6301]
          Length = 387

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 168/367 (45%), Gaps = 15/367 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  FRNY    + F A  TI +G+N  GKTN+LEA+   S  R  R +   D+ + G+
Sbjct: 6   LHLQHFRNYRDQTVQFQAPKTILLGENAQGKTNLLEAVELFSTLRSHRVSRDRDLVQTGA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            S   T A VE   G  +  ++++ +     R  +  +V+ R +D L     + +    +
Sbjct: 66  ESALLT-AVVERDSG--EQQLQIQLQQQGRRRVQRDGEVLRRQLDLLGSLCSVQFSSLDL 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSSIEA 188
           D +  G   +RR +LDR++  + P +      + R++R RN LL      D +  + +  
Sbjct: 123 DLVRGG-PQQRRVWLDRLLIQLQPIYAHLQQQYGRVLRQRNALLRRAESLDLALLAPLNW 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFDQSFCAL 243
           Q+A+LGV I   R   I  L  L   +      Q+E    I       L         A 
Sbjct: 182 QLAQLGVHIMRRRSRAIQRLVPLAAHWHREISGQREQL--IVAYQPSVLAPDDTDEAIAW 239

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E    ++   R  +   R +L+GPHR DL +        +   S G+Q+ +++ + LA 
Sbjct: 240 QERMLAQIEARRAAELGQRTSLVGPHRDDLNLSINGTEARL-QASQGQQRTLVLSLKLAE 298

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETA 362
             LI    G  P+LLLD++ A LD  ++  L   + +   Q  +T T  S FD S  ETA
Sbjct: 299 LELIEAVLGEPPLLLLDDVLAELDLRRQQQLLEAIAN-RFQTLITTTHLSAFDQSWVETA 357

Query: 363 KFMRISN 369
           + + + +
Sbjct: 358 QILTVQS 364


>gi|203287881|ref|YP_002222896.1| DNA replication and repair protein RecF [Borrelia recurrentis A1]
 gi|201085101|gb|ACH94675.1| DNA replication and repair protein RecF [Borrelia recurrentis A1]
          Length = 355

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 155/350 (44%), Gaps = 25/350 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI+F N   F+N  +  + FD  +  F G+NG GKTNIL+AI  L+    F   +  ++ 
Sbjct: 4   KIEFFN---FKNIENQVINFDFDNIYFCGENGSGKTNILDAIYCLAFASSFLVNTDKELI 60

Query: 66  RIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             G   F+   F + +   G     I L  R+D+    +++N+ ++R  D  +  L I  
Sbjct: 61  TYGEREFYLKCFYQTKEKNG----EINLSVRNDKKE--IKVNNSIVR--DRRDLILNIPA 112

Query: 125 LVPSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           ++ S   I    G  M+RR F D+ +  I   +   +  + ++++ RN +L +   D   
Sbjct: 113 IIFSNHDIDFIIGTPMKRRWFFDQAMSFISLSYLDSLRKYRKILKQRNLILKQR--DKDL 170

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-C 241
                    +  ++I   R   +         Y        +   ++  L+ K+  S  C
Sbjct: 171 LKIYNETFVDCALEITEMRKNFVEHFCRFFQYYCS------LIFDVSCNLEIKYFPSVTC 224

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
             K+++ + L    K +  S  TLIGPHR DL     +  +   H STG+ +V+ +   L
Sbjct: 225 CSKDKFFEILCLREKDELYSETTLIGPHR-DLYEILSEHRVFTDHASTGQIRVLALIYRL 283

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
               + ++    +PILL D++   LD  KR  +F I+    SQ F T  D
Sbjct: 284 VQVIIFNDKFNMSPILLFDDVFLELDSIKRKKVFEILPK-DSQCFFTFLD 332


>gi|149200628|ref|ZP_01877631.1| recombination protein F [Lentisphaera araneosa HTCC2155]
 gi|149136277|gb|EDM24727.1| recombination protein F [Lentisphaera araneosa HTCC2155]
          Length = 364

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 168/356 (47%), Gaps = 30/356 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  FRNY  L L  +   ++F G NG GKT  LEA+ FLS  R   R+S+    +
Sbjct: 4   ISRIQLKNFRNYPELELKLEPGISVFRGLNGQGKTAFLEALGFLSLLRSI-RSSHTRHLK 62

Query: 67  IGSPSFFSTFA---RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                FFS  A   RV   E   D+S+    +     R L ++   +    +    ++  
Sbjct: 63  KWESDFFSLRACLDRVTRPE--LDMSVYYGDK-----RQLSLDGNRVPTTSDFIGVVKSV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
             +P    I  G +  RR++LD ++  + P + + +  +++ ++ RN++L  G       
Sbjct: 116 AFMPEDIEIVKGSASWRRQYLDILLSQLSPGYLQSLKHYQKALKSRNQVLKRGLNLDLEL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              +  + E G ++  AR+ ++  L+   S ++E + K++F          L+ ++  S 
Sbjct: 176 DVWDDILIEHGCEVLEARLSLLPRLAESVSTLVEKMLKKDF---------LLELQYKNSL 226

Query: 241 CA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV-V 295
                 L+  Y ++L + R+ D + + T  GPHR DL+++   ++++  +GS G+ ++  
Sbjct: 227 AKNATDLRSVYIERLLENRERDKLYKMTHQGPHRDDLLINLNGRSLS-NYGSEGQCRLSS 285

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           L+    A   L+        ILL+D++   LDE  R A  + V+  G Q+F+  TD
Sbjct: 286 LILKAAAVELLLPVEKPDCLILLIDDVLGELDEFSRRAFLKCVSR-GDQVFIACTD 340


>gi|260063479|ref|YP_003196559.1| DNA replication and repair protein RecF [Robiginitalea biformata
           HTCC2501]
 gi|88782923|gb|EAR14097.1| DNA replication and repair protein RecF, ABC family ATPase
           [Robiginitalea biformata HTCC2501]
          Length = 359

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 162/357 (45%), Gaps = 40/357 (11%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  ++N+ S    FD++    VG NG+GKTN+L+AI  L+ G+ +         R G 
Sbjct: 6   LSLLNYKNFESRDFSFDSKINCLVGPNGIGKTNVLDAIYHLAFGKSYFNPVTTQNIRHGE 65

Query: 70  PSFFSTFARVEGM---EGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             F      ++G+   EG A+    S K   R     + L+ ND   +  D ++ H+   
Sbjct: 66  DFFV-----IDGVFDKEGEAEHIVCSFKKGVR-----KVLKRND---KAYDRISDHIGTV 112

Query: 124 WLV---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TE 175
            LV   P+  D I  G S  RR+FLD ++   D  + + ++D+++++  RN LL      
Sbjct: 113 PLVIVSPADRDLILEG-SETRRKFLDGVISQSDRGYLQDVLDYQKVLSQRNALLKYFAAN 171

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
             FDS        QMA LG +I+  R   +     +  E  Q  +     + L       
Sbjct: 172 HRFDSETLEVYNMQMAALGSRIHGKRAAFMEEFQPIFSEQYQAISGGDETVGLA------ 225

Query: 236 FDQSFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           ++     A  EE  ++  +    D + + T  G H+ DL +      I    GS G+QK 
Sbjct: 226 YESQLADAPLEELLRRSLE---KDRVLQYTTQGIHKDDLSMTIEGHPIK-KFGSQGQQKS 281

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGT 350
            L+G+  A  + +       PILLLD+I   LDE++   +  +V  D+  QIF++ T
Sbjct: 282 FLIGLKFAQFQFMKARRPGTPILLLDDIFDKLDENRVAHIISLVNRDLFGQIFISDT 338


>gi|299541762|ref|ZP_07052085.1| hypothetical protein BFZC1_22469 [Lysinibacillus fusiformis ZC1]
 gi|298725500|gb|EFI66141.1| hypothetical protein BFZC1_22469 [Lysinibacillus fusiformis ZC1]
          Length = 371

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 161/367 (43%), Gaps = 47/367 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + ++ +RNY +L L F  +  +F+G+N  GKTN++E+I  L+  +  R  +  ++ R
Sbjct: 3   IEQIKLTNYRNYDALALNFSPKINVFIGENAQGKTNVMESIYVLAMAKSHRTTNDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                + S + ++EG        + +E    +  +  +IN +    +      + +    
Sbjct: 63  -----WDSDYGKIEGAVKKRHGILPIELTITKKGKKGKINHIEQSRLSHYIGQMNVVMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    +  G    RRRF+D  +  I P +   ++ F+++++ RN  L             
Sbjct: 118 PEDLNVVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKVLKQRNHFLKMN---------- 167

Query: 187 EAQMAELGVKINIARVEMINALSSLI------MEYVQKENFP-HIKLSLTGFLDGK---- 235
           + +     V   +   + I+A + +I      M+ +Q+   P H      G   GK    
Sbjct: 168 QGKSMSNDVMYEVYNEQYIHAATQIIRKRFQFMDLLQEWAEPIH-----AGISQGKETLV 222

Query: 236 ----------FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAIT 283
                      + S   ++    +KL + R+ +     TL+GPHR DL  +V+  D    
Sbjct: 223 IKYRTVAGIEKEHSTSEIENTLHQKLIEAREREFDRGVTLVGPHRDDLQFLVNGYD---V 279

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
             +GS G+Q+   + + LA   LI   T   PILLLD++ + LD+ +++ L   +     
Sbjct: 280 QTYGSQGQQRTTALSLKLAEIELIKQETKETPILLLDDVLSELDDYRQSHLLNTIQG-EV 338

Query: 344 QIFMTGT 350
           Q F+T T
Sbjct: 339 QTFVTTT 345


>gi|326329134|ref|ZP_08195462.1| RecF protein [Nocardioidaceae bacterium Broad-1]
 gi|325953021|gb|EGD45033.1| RecF protein [Nocardioidaceae bacterium Broad-1]
          Length = 382

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 168/369 (45%), Gaps = 39/369 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++ +FR+Y ++ +  +A  T FVG NG GKTN++EAI +LS  +  R A+ A + R
Sbjct: 3   VSHLSLHDFRSYPNVEVPLEAGVTAFVGRNGQGKTNLVEAIDYLSRLQSHRVATDAPLVR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+       A V +G       ++++E    R+ +  +IN   +    +L   +R    
Sbjct: 63  AGAEQAVVRAAVVRDGRTA----TLEVEINAGRANKA-RINKSPLPRTRDLVGLVRTVVF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184
            P    +  G   +RRRFLD ++    PR      D++R+++ RN LL T G    S   
Sbjct: 118 SPEDLTLVKGDPSDRRRFLDDLMILRAPRLAGVRSDYDRVLKQRNSLLKTAGLARGSARE 177

Query: 185 SIEA-------QMAELGVKINIARVEMINALSSLI---MEYVQKENF---------PHIK 225
              A        +A +G +I   R+ ++ AL   +    E V +            P ++
Sbjct: 178 GALATLAVWDDHLATIGAEILSQRLSLVEALKPYVGKAYETVARGASRDDAEITYKPVVE 237

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITI 284
           L  T       +    A+ EE A+     R+ D + R  +L+GPHR DL++     A  +
Sbjct: 238 LVET--TTPSVETLRQAILEELAR-----RQKDELDRGISLVGPHRDDLLLHISAGAERL 290

Query: 285 ---AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE     + + LA   L+    G  PIL+LD++ A LD  +R  L  +V D 
Sbjct: 291 PVKGYASHGESWSFALALRLAAYDLL-RADGDDPILILDDVFAELDSQRRVQLAELVAD- 348

Query: 342 GSQIFMTGT 350
             Q+ +T  
Sbjct: 349 AEQVLVTAA 357


>gi|307150124|ref|YP_003885508.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7822]
 gi|306980352|gb|ADN12233.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7822]
          Length = 384

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 178/378 (47%), Gaps = 42/378 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + +  FRNY   R+ FD+Q TI VG+N  GK+N+LEA+  L+  +  R +   D+  
Sbjct: 3   LKTVQLRSFRNYREQRVNFDSQKTIIVGNNAQGKSNLLEAVELLATLKSHRVSRDRDLVL 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+ S     A +E   G A++++ L     R+V   Q  + + R +D L     + +  
Sbjct: 63  EGAAS-GQILAALERAYGQAELALILRISGRRTVILNQ--EPLRRQMDFLGVLNAVQFSS 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------------ 174
             +D +  G    RR ++D ++  ++P +   +  + ++++ RN LL             
Sbjct: 120 LDLD-LVRGAPDARRSWIDTLLIQLEPIYAHILSQYYQVLKQRNALLKKFRQREEDNLNP 178

Query: 175 -----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-L 228
                +   D S     + Q+AE G ++   R  ++  L+ L  ++       H  +S  
Sbjct: 179 EIIVEQLPSDISQLKLWDVQLAEAGSRVTRRRARVLERLTPLAQQW-------HSNISGK 231

Query: 229 TGFLDGKF-------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCD 279
           T  L+ K+       +     +K+ + +K+   R  +     T++GPHR D+  I+++  
Sbjct: 232 TEVLEIKYIPNVSWTEDDPLEVKQAFLEKIEKRRMAEQQLGTTVVGPHRDDIEFIINHTP 291

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
                 +GS G+Q+ +++ + LA  +LI    G  P+LLLD++ A LD +++N L   + 
Sbjct: 292 AKY---YGSQGQQRTLVLALKLAELQLIEEVVGEPPLLLLDDVLAELDPNRQNQLLEAIQ 348

Query: 340 DIGSQIFMTGTDKSVFDS 357
           D   Q  +T T    FDS
Sbjct: 349 D-RFQTLITTTHLHSFDS 365


>gi|312869203|ref|ZP_07729375.1| DNA replication and repair protein RecF [Lactobacillus oris
           PB013-T2-3]
 gi|311095224|gb|EFQ53496.1| DNA replication and repair protein RecF [Lactobacillus oris
           PB013-T2-3]
          Length = 373

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 149/358 (41%), Gaps = 29/358 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  FRNY    + F     + +G N  GKTN+LEAI  LS  R  R  +  ++     
Sbjct: 6   LHLHHFRNYEDQTVHFAPGVNVLIGHNAQGKTNMLEAIYALSLTRSHRTNNDRELINWQE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            S F     + G+   A   + LE +  +  +  ++N +    + +    L      P  
Sbjct: 66  KSAF-----ISGVVQKASGRVPLELQFTKEGKRAKVNHLEQARLAQYIGQLNAILFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSS 185
             +  G    RRRF+D     +  ++      +  L+R RN+ L +  +    D      
Sbjct: 121 LSLVKGAPAVRRRFMDMEFSQMSSKYLYNASQYRSLLRQRNKYLKQLKYGQQHDRVLLDV 180

Query: 186 IEAQMAELGVKINIARVEMINALS----------SLIMEYVQKENFPHIKLSLTGFLDGK 235
           +  Q+A  G ++ +AR   +  L           SL  E ++      +K++    +D  
Sbjct: 181 LSDQLAAYGAELVVARFHFLQQLEKWAADLHYQISLNAEKLRLVYATQLKVTAETTVDDA 240

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           + Q     KE  A+++  G         T+ GP R D+      K +  + GS G+Q+  
Sbjct: 241 YQQLLTIFKENKAREIDQGS--------TMFGPQRDDIRFLVNGKNVQ-SFGSQGQQRTT 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            + + LA   L+   TG  P+LLLD++ + LD  ++  L   + D   Q F+T T  S
Sbjct: 292 ALAVKLAEIDLMKEQTGEYPLLLLDDVLSELDTVRQTHLLTAIQD-KVQTFLTTTSLS 348


>gi|260590842|ref|ZP_05856300.1| RecF protein [Prevotella veroralis F0319]
 gi|260537193|gb|EEX19810.1| RecF protein [Prevotella veroralis F0319]
          Length = 368

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 160/378 (42%), Gaps = 45/378 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N  +  L   A+   F+G NG GKTN+L+A+ +LS  R       ++V
Sbjct: 1   MQLNKLSIINYKNIEAATLDLSAKLNCFIGHNGEGKTNLLDAVYYLSFCRSAFNPKDSEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS- 123
            R  +  F         +EG        +  D   V C               ++ R+S 
Sbjct: 61  MRHDADYFV--------LEG----DYTTDGGDKEQVYCGMKRGTKKHFKRNKKEYKRLSM 108

Query: 124 --------WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174
                   ++ P+   +  G S ERRR +D ++   D  +   +  + + ++ RN+LL  
Sbjct: 109 HIGQVPLIFVSPADATLIDGGSEERRRLMDVVISQYDTPYIEDLNRYNKALQQRNKLLKQ 168

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFL 232
           E   DS+    +E QMAE G  I   R   +  L+ +     Q   EN   + L      
Sbjct: 169 EEEPDSTLMELLEMQMAEYGEAIYKKRAAFVEELTPVFQRIYQTICENREQVSLEYV--- 225

Query: 233 DGKFDQSFCALKEEYAKKLFD----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                 S C         L D     R  D +   +L G H+ DL++   D  I    GS
Sbjct: 226 ------SHCQ-----RGSLLDVIRRDRAKDRIMGYSLHGIHKDDLVMKLGDYPIR-REGS 273

Query: 289 TGEQKVVLVGIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIF 346
            G+ K  ++ + LA    +  T+G   P+LLLD+I   LD  +   + R+V+ D   QIF
Sbjct: 274 QGQNKTYVLALKLAQFDFLRRTSGNNTPLLLLDDIFDKLDSSRVEQIVRLVSGDDYGQIF 333

Query: 347 MTGTDKSVFDSLNETAKF 364
           +T T++   D + + + F
Sbjct: 334 ITDTNRDHLDKILQGSSF 351


>gi|223983626|ref|ZP_03633804.1| hypothetical protein HOLDEFILI_01085 [Holdemania filiformis DSM
           12042]
 gi|223964393|gb|EEF68727.1| hypothetical protein HOLDEFILI_01085 [Holdemania filiformis DSM
           12042]
          Length = 368

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 162/355 (45%), Gaps = 25/355 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  + +  FRNY S + + D    + +G N  GKTN+LE+I  LS  R  R     D+
Sbjct: 1   MKINQIRLKNFRNYDSCQFIPDPHMNVIIGKNAQGKTNLLESIVLLSTTRSHRAVRDQDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G   F     R+   E    +S  +  +     + L I+   +    E    L    
Sbjct: 61  IREGQ-DFCKAECRL-NTEPEMVLSAVIHGKG----KTLMIHQKPVSRSSEFIGKLNAVL 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             PS   +F      RRR +D  +  + PR+ + +    +L++ RN LL   + D++   
Sbjct: 115 FAPSDLELFEAPPKVRRRLMDVEIGKVSPRYMQALSAMMKLLKERNSLLKREHLDNAMLE 174

Query: 185 SIEAQMAELGVKINIARVEMINAL--------SSLIMEYVQKENFPHIKLSLTGFLDGKF 236
            ++ QM E  + I   R + I  +        S+L  E  Q     H   ++T   +   
Sbjct: 175 VLDQQMIEQQLTIIAMRRQFIAKMNESLSRTYSALAEEEAQVSAAYH---TITEQTEPD- 230

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                A++EE ++KL + R+ D + + T  G HR DL      + + +++ S G++++++
Sbjct: 231 -----AMREEISRKLLENRERDRILKTTSSGVHRDDLSFQLNGRDV-LSYASQGQRRMIV 284

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           +   L+    I+      P+LLLD++ + LD+ KR  LF +++    Q F+T T+
Sbjct: 285 LAWKLSLIDFIAERLNELPVLLLDDVLSELDQQKRVNLFSLISP-EIQTFITTTE 338


>gi|312872636|ref|ZP_07732701.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091678|gb|EFQ50057.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           2062A-h1]
          Length = 373

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++ +   
Sbjct: 6   LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    A + G     +I   L+       +   IN +  + +      +      P  
Sbjct: 63  --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D     I+  +   +  + ++++ RN  L    ++   D  + + 
Sbjct: 121 LSLIKGSPAFRRRFMDLEFGQINAEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242
           +  Q+A L  ++   RV  ++ L         KEN       ++     LD ++  SF  
Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQREILDIEYKASFPE 231

Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             E+      Y K L  F+  K++ M    TL+GPHR DL V + +K     + S G+Q+
Sbjct: 232 FDEKDSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            +++ I LA   L+       PILLLD++ + LD  ++  L   +    +Q F+T TD
Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQTFITTTD 347


>gi|284988633|ref|YP_003407187.1| DNA replication and repair protein RecF [Geodermatophilus obscurus
           DSM 43160]
 gi|284061878|gb|ADB72816.1| DNA replication and repair protein RecF [Geodermatophilus obscurus
           DSM 43160]
          Length = 399

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 169/394 (42%), Gaps = 41/394 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  FRN+  + L      T+FVG NG GKTN++EA+ +L+     R A  A + R
Sbjct: 3   LRHLQLGSFRNWDRVDLALRPGPTVFVGRNGEGKTNLVEAVGYLATMGSHRVAGDAPLVR 62

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G S +      R E  E L +I I    R +R    +++N   +    EL   ++    
Sbjct: 63  QGASQAVVRAALRREDRELLVEIEIN-PGRANR----VRVNRAPLPRPRELLGLVKSVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    +  G   ERRRFLD ++ +  PR      D++R+++ RN LL           +
Sbjct: 118 APEDLVLVRGDPAERRRFLDDLLVSRTPRLAGVRSDYDRVLKQRNALLKTARMARGDALA 177

Query: 186 I----EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL-------DG 234
                +  + +LG ++  AR+ ++  L+  +             ++  G+        DG
Sbjct: 178 TLDVWDGHLVDLGGQLLAARLRLVADLAPHVARAYAGVAGADAAVAALGYASTVPLAGDG 237

Query: 235 K----------FDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAIT 283
                        +   AL+E  A+     R+ D + R  TL+GPHR DL++       T
Sbjct: 238 TPVAEGTPLPDAAELSAALRERVAE-----RRGDEVDRGMTLVGPHRDDLVISLGS---T 289

Query: 284 IAHG--STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
            A G  S GE   + + + L    L+    G  PIL+LD++ A LD D+R AL  +    
Sbjct: 290 PAKGFASHGESWSLALALKLGCFELL-RADGDEPILVLDDVFATLDADRRAALATVARSA 348

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
              +        V   L  T   ++++  QA+ +
Sbjct: 349 EQSLVTAAVLDDVPAELRST--VVQVAGGQAVPL 380


>gi|259500774|ref|ZP_05743676.1| recombination protein F [Lactobacillus iners DSM 13335]
 gi|302190775|ref|ZP_07267029.1| recombination protein F [Lactobacillus iners AB-1]
 gi|312874858|ref|ZP_07734877.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           2053A-b]
 gi|325913713|ref|ZP_08176075.1| DNA replication and repair protein RecF [Lactobacillus iners UPII
           60-B]
 gi|329919805|ref|ZP_08276756.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN
           1401G]
 gi|259167468|gb|EEW51963.1| recombination protein F [Lactobacillus iners DSM 13335]
 gi|311089603|gb|EFQ48028.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           2053A-b]
 gi|325477072|gb|EGC80222.1| DNA replication and repair protein RecF [Lactobacillus iners UPII
           60-B]
 gi|328937152|gb|EGG33580.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN
           1401G]
          Length = 373

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++ +   
Sbjct: 6   LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    A + G     +I   L+       +   IN +  + +      +      P  
Sbjct: 63  --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D     I+  +   +  + ++++ RN  L    ++   D  + + 
Sbjct: 121 LSLIKGSPAFRRRFMDLEFGQINAEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242
           +  Q+A L  ++   RV  ++ L         KEN       ++     LD ++  SF  
Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQKEILDIEYKASFPE 231

Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             E+      Y K L  F+  K++ M    TL+GPHR DL V + +K     + S G+Q+
Sbjct: 232 FDEKDSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            +++ I LA   L+       PILLLD++ + LD  ++  L   +    +Q F+T TD
Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQTFITTTD 347


>gi|194332856|ref|YP_002014716.1| DNA replication and repair protein RecF [Prosthecochloris aestuarii
           DSM 271]
 gi|226737818|sp|B4S937|RECF_PROA2 RecName: Full=DNA replication and repair protein recF
 gi|194310674|gb|ACF45069.1| DNA replication and repair protein RecF [Prosthecochloris aestuarii
           DSM 271]
          Length = 370

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 156/365 (42%), Gaps = 24/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           + I  FR ++ L         +  G NG GKTNILEAI + +  +GF R +        +
Sbjct: 6   IKIQNFRKHSELIFSPSEGINLIFGPNGSGKTNILEAIHYCALTKGFNRTTDRQCMNFSA 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
            SF   S F    G +    + +   T   +S+    +N+  +     L   +      P
Sbjct: 66  ESFLLKSLFTSDTGCQ--YRVHVDFSTNGGKSI---SLNNSQLEKFSALIGLIPCILFSP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
           +   I  G   ERRRFLD  +  I   +  +++ + R+++ RN LL      SSW  S  
Sbjct: 121 AEITIVHGSPQERRRFLDNALCQISKSYLEQLLQYRRILQQRNALL-----HSSWDRSSP 175

Query: 188 AQ--------MAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLTGFLDGKFDQ 238
           A         +AE G  I   R++ ++         Y   +     +L+    L      
Sbjct: 176 APDMNIWTELLAESGAFIIKERMDFLDEFQPYFSNAYAILDTGEIPRLTYRSSLGKALVS 235

Query: 239 S-FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           S    + +    +  + +  + + ++TL+GPHR D I+ Y D +    + S G+ +  L+
Sbjct: 236 SDRAGIADSLMHRFGEIQHQEQVRKQTLLGPHR-DEILFYLDGSDVKKYASQGQTRTFLI 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + +A  R + +  G   I LLD+I + LD+ +   +  ++   G Q  +T T+K+    
Sbjct: 295 ALKVALQRFLFDKKGEQSIFLLDDIFSELDQRRVERVLEMIAGFG-QSLITSTEKTGLSF 353

Query: 358 LNETA 362
           L+E +
Sbjct: 354 LHEIS 358


>gi|271961614|ref|YP_003335810.1| recombinational DNA repair ATPase (RecF pathway)-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270504789|gb|ACZ83067.1| Recombinational DNA repair ATPase (RecF pathway)- like protein
           [Streptosporangium roseum DSM 43021]
          Length = 390

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 157/373 (42%), Gaps = 35/373 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y ++ L  +   T FVG NG GKTN++EA+ +++     R A+   +
Sbjct: 1   MHVANLSLTDFRSYDTVDLGLEPGVTAFVGPNGQGKTNLVEALGYVATQSSHRVATDGPL 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+  +   +    E    L    I+LE    ++ R       V R  D +   LR  
Sbjct: 61  VRQGAARAIVRSVVVREDRRAL----IELEINPGKANRARLNRSPVSRPRDVIGL-LRTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG------- 176
              P    +  G   ERRR+LD ++ A  PR      D++R+++ R  LL          
Sbjct: 116 LFAPEDLSMVKGDPSERRRYLDDLLVARTPRFAGVRADYDRVLKQRGALLRTAAQARRGG 175

Query: 177 --------------YFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLI-MEYVQ- 217
                                S++E   A +A  G ++  AR+E++ AL  L+   Y   
Sbjct: 176 RSGRRADNDAAFAAAGAGDPLSTLEVWDAHLARHGAELLAARLELVEALRPLVAASYAAL 235

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
             N     L   G L  +       L+E     L + R  +     TL+GPHR DL +  
Sbjct: 236 APNSAPAALEYRGTLSTEEGSDRATLEERLRAGLLEVRTSEIERGVTLVGPHRDDLFLGL 295

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
            +      + S GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  I
Sbjct: 296 GELPAR-GYASHGESWSFALALRLAAYDLL-RADGGDPVLILDDVFAELDNQRRGRLAGI 353

Query: 338 VTDIGSQIFMTGT 350
           V     Q+ +T  
Sbjct: 354 VAP-AEQVLITAA 365


>gi|15640046|ref|NP_062598.1| recombination protein F [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|147675554|ref|YP_001218398.1| recombination protein F [Vibrio cholerae O395]
 gi|153819847|ref|ZP_01972514.1| recF protein [Vibrio cholerae NCTC 8457]
 gi|153821947|ref|ZP_01974614.1| recF protein [Vibrio cholerae B33]
 gi|227080251|ref|YP_002808802.1| recF protein [Vibrio cholerae M66-2]
 gi|229508299|ref|ZP_04397803.1| DNA recombination and repair protein RecF [Vibrio cholerae BX
           330286]
 gi|229508862|ref|ZP_04398353.1| DNA recombination and repair protein RecF [Vibrio cholerae B33]
 gi|229515947|ref|ZP_04405404.1| DNA recombination and repair protein RecF [Vibrio cholerae TMA 21]
 gi|229517133|ref|ZP_04406579.1| DNA recombination and repair protein RecF [Vibrio cholerae RC9]
 gi|229606573|ref|YP_002877221.1| recombination protein F [Vibrio cholerae MJ-1236]
 gi|254225546|ref|ZP_04919155.1| recF protein [Vibrio cholerae V51]
 gi|254851579|ref|ZP_05240929.1| DNA replication and repair protein recF [Vibrio cholerae MO10]
 gi|298501199|ref|ZP_07010998.1| recombination protein F [Vibrio cholerae MAK 757]
 gi|13959488|sp|Q9KVX4|RECF_VIBCH RecName: Full=DNA replication and repair protein recF
 gi|172047499|sp|A5F493|RECF_VIBC3 RecName: Full=DNA replication and repair protein recF
 gi|254790498|sp|C3LP87|RECF_VIBCM RecName: Full=DNA replication and repair protein recF
 gi|9654405|gb|AAF93192.1| recF protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|125621866|gb|EAZ50191.1| recF protein [Vibrio cholerae V51]
 gi|126509608|gb|EAZ72202.1| recF protein [Vibrio cholerae NCTC 8457]
 gi|126520567|gb|EAZ77790.1| recF protein [Vibrio cholerae B33]
 gi|146317437|gb|ABQ21976.1| recF protein [Vibrio cholerae O395]
 gi|227008139|gb|ACP04351.1| recF protein [Vibrio cholerae M66-2]
 gi|227011983|gb|ACP08193.1| recF protein [Vibrio cholerae O395]
 gi|229346196|gb|EEO11168.1| DNA recombination and repair protein RecF [Vibrio cholerae RC9]
 gi|229347047|gb|EEO12009.1| DNA recombination and repair protein RecF [Vibrio cholerae TMA 21]
 gi|229354137|gb|EEO19069.1| DNA recombination and repair protein RecF [Vibrio cholerae B33]
 gi|229354572|gb|EEO19494.1| DNA recombination and repair protein RecF [Vibrio cholerae BX
           330286]
 gi|229369228|gb|ACQ59651.1| DNA recombination and repair protein RecF [Vibrio cholerae MJ-1236]
 gi|254847284|gb|EET25698.1| DNA replication and repair protein recF [Vibrio cholerae MO10]
 gi|297540071|gb|EFH76133.1| recombination protein F [Vibrio cholerae MAK 757]
          Length = 363

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 169/366 (46%), Gaps = 20/366 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +   
Sbjct: 6   LMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65

Query: 70  PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              F    R+      +D   + + +  + D S   ++I     + + +L + L +  + 
Sbjct: 66  SELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184
           P    + +    +RR F+D  VF  +P        F+RL + RN LL   + Y + S+  
Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I+  R   +N L + + E + +   P   + L  +   + DQ + ++ 
Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  ++       D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++K
Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351

Query: 364 FMRISN 369
              +++
Sbjct: 352 TFHVAH 357


>gi|16077072|ref|NP_387885.1| recombination protein F [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221307813|ref|ZP_03589660.1| recombination protein F [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221312135|ref|ZP_03593940.1| recombination protein F [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221317068|ref|ZP_03598362.1| recombination protein F [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221321331|ref|ZP_03602625.1| recombination protein F [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|132246|sp|P05651|RECF_BACSU RecName: Full=DNA replication and repair protein recF
 gi|467394|dbj|BAA05240.1| recombination protein [Bacillus subtilis]
 gi|2632271|emb|CAB11780.1| DNA repair and genetic recombination factor [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 370

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 170/388 (43%), Gaps = 50/388 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L ++ +RNY    L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++ R
Sbjct: 3   IQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   +A++EG     + +I ++    +  +  ++N +  + + +    L      
Sbjct: 63  -----WDKDYAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RRRFLD  +  + P +   +  +++++  RN  L    T    D + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDRTM 177

Query: 183 CSSIEAQMAELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIKLS 227
              +  Q+ E+  K+ + R++                   L  L ++Y       H  L 
Sbjct: 178 LDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKY-------HTALD 230

Query: 228 LTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           ++  LD       + ++F  L+E+  ++             TL GPHR D++  Y +   
Sbjct: 231 VSDPLDLSKIGDSYQEAFSKLREKEIERGV-----------TLSGPHRDDVLF-YVNGRD 278

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-I 341
              +GS G+Q+   + + LA   LI    G  PILLLD++ + LD+ +++ L   +   +
Sbjct: 279 VQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQGRV 338

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISN 369
            + +  T  D    ++L +   F R+ N
Sbjct: 339 QTFVTTTSVDGIDHETLRQAGMF-RVQN 365


>gi|300814773|ref|ZP_07095021.1| putative DNA replication and repair protein RecF [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300511160|gb|EFK38412.1| putative DNA replication and repair protein RecF [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 358

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 160/356 (44%), Gaps = 11/356 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + + F+ +  FRNY SL+L    +  I  G N  GKTN+LEAI        F+     D+
Sbjct: 1   MNLSFIGLYNFRNYKSLKLNTGPKINIIYGKNASGKTNLLEAIYMTCKAYSFKNPRDNDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S +        E      +  I++ TR++  V+   IN+      D   +   I  
Sbjct: 61  INF-SKNEACILGTYENNCYKDNYRIEI-TRNN--VKKYFINEQKTNSKD-FRQARHIIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    I      +RRRF+D  +  ID  +   +  + +++  RN+LL     + S   
Sbjct: 116 FSPVDLNIIKNSPSDRRRFIDESLSNIDLSYDYYLSQYRKILMERNKLLKISK-NMSLLE 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +++++G KI I R+  I  L+    ++ Q  +  + +L  T         +   ++
Sbjct: 175 IYDRELSKIGSKIIIMRLIAIKELNKYANKHYQNLS-KNDRLKTTYLSTIPLSSNEEEIR 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +   L   +  D   + T IGPHR D+     DK+ T A GS GEQ+ V++ + L+  
Sbjct: 234 ENFYNFLKLNQYKDFQRKNTSIGPHRDDIDFKINDKS-TKAFGSQGEQRSVVLSLKLSEF 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359
            LI        ILLLD++ + LDE +   L   + D  +Q F+T T+ K  F +LN
Sbjct: 293 DLIYKKFNDKSILLLDDVFSELDEKRTMYLLDSIKD--TQTFITTTEFKDYFKNLN 346


>gi|257067226|ref|YP_003153481.1| DNA replication and repair protein RecF [Brachybacterium faecium
           DSM 4810]
 gi|256558044|gb|ACU83891.1| DNA replication and repair protein RecF [Brachybacterium faecium
           DSM 4810]
          Length = 414

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 164/402 (40%), Gaps = 52/402 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++++FR+Y+ L L      T+ VG NG GKTN++EA+ +L+     R    A +
Sbjct: 1   MQLTSLDLTDFRSYSRLTLPVRPGITVLVGQNGQGKTNVVEAVWYLATLSSHRVPHDAAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G     +   R   +     + + LE    +S R       V R+ D L + +R   
Sbjct: 61  VHRGE---STAIVRASFVRAGRPLQVDLEITPGKSNRARLQGQNVPRLRDLLGE-VRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------- 175
             P    +       RRRFLD ++F I PR      D++R+++ R  LL +         
Sbjct: 117 FAPEDLGLIKADPEGRRRFLDELLFEIAPRFASVKADYDRVLKQRGNLLKQMRSMRRGSS 176

Query: 176 ----GYFDSSWCSS-----IEAQMAELGVKINIARVEMINALSS-LIMEY--VQKENFPH 223
               G  D +  +S      + Q+A  G ++  AR+ ++N LS  L   Y  V  +    
Sbjct: 177 GRSVGGLDPAETASSTLEVWDQQLARYGAELLRARLHLVNRLSPHLGYSYLRVSTDEGAE 236

Query: 224 IKLSLTGFLDGKFDQ-------------------SFCALKEEY---AKKLFDGRKMDSMS 261
             L L     G  D                    S  A +E +    + L  G   +   
Sbjct: 237 QALDLPPDQRGDVDSPAEIRYRSAVLDQLGAPAGSLPATREIHDGMLEMLAAGHDEEIDR 296

Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG----FAPIL 317
             TL GPHR D+ +   D      + S GE   + + + LA   L+    G      PIL
Sbjct: 297 GATLTGPHRDDMEIRLHDFPAK-GYASHGESWSLALALRLASYDLLRLEEGDLGDGEPIL 355

Query: 318 LLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
           +LD++ + LD  +R  L RIVT     +  T  D  + DSL 
Sbjct: 356 ILDDVFSELDTRRRERLGRIVTTASQVLITTANDGDIPDSLE 397


>gi|86131710|ref|ZP_01050307.1| DNA replication and repair protein RecF [Dokdonia donghaensis
           MED134]
 gi|85817532|gb|EAQ38706.1| DNA replication and repair protein RecF [Dokdonia donghaensis
           MED134]
          Length = 363

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 164/358 (45%), Gaps = 36/358 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N+ S    FDA+   FVG+NGVGKTN+L+AI  LS G+     SY +   
Sbjct: 3   LKSLSLINYKNFESKAFTFDAKINCFVGNNGVGKTNVLDAIYHLSFGK-----SYFNPVT 57

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121
             + +  + F  ++G+        + + RD++ V   +     +     ++ D    H+ 
Sbjct: 58  SQNINHNADFFVIDGL-------YEKKERDEKVVVSAKKGQKKVIKRNAKIYDRFADHIG 110

Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----T 174
              LV   P+   + +  S  RR+F+D ++   D  +   ++ + +++  RN LL     
Sbjct: 111 FLPLVIISPADRDLITEGSDTRRKFIDGVISQSDKSYLSDLLGYSKILSQRNALLKYFAA 170

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
              F++   +    Q+   G  I   R + +   + +  E  +  +     ++LT     
Sbjct: 171 NNTFNTDTLAVYNEQLEGFGTPIFEKRQQFLERFAPIFNERYKAISGDTENVTLT----- 225

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            ++ S   +  +++  L +    D   + T +G H+ DL  +     +    GS G+QK 
Sbjct: 226 -YNSSLNTMPLKHS--LTNALAKDRSLQYTSVGIHKDDLQFEINGHPVK-KFGSQGQQKS 281

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGT 350
            L+ + LA    I   +G  P+LLLD+I   LDE++   +  +V   D G Q+F++ T
Sbjct: 282 YLIALKLAQFDFIKQESGTTPLLLLDDIFDKLDENRVQHIIELVNTNDFG-QLFISDT 338


>gi|320527131|ref|ZP_08028318.1| putative recombination protein F [Solobacterium moorei F0204]
 gi|320132459|gb|EFW25002.1| putative recombination protein F [Solobacterium moorei F0204]
          Length = 363

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 151/340 (44%), Gaps = 26/340 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + +  FRNY +  + F+    +  G N  GKTN+LE++ +LS  R  R      + R
Sbjct: 3   IKNIQLRNFRNYENAYIEFNPSINLITGANAQGKTNLLESLVYLSLTRSHRIVDDKKLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--------RCLQINDVVIRVVDELNK 118
                           E  A I  K    D++ +        + L I+   ++   E   
Sbjct: 63  --------------NDEMFAGIDCKFVDTDEKDIEVIIHPNGKTLMIHKRPLKKSSEFIG 108

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            L +    P   RIF+    ERRR +++ +  +  ++   +  F+  ++ RN LL     
Sbjct: 109 LLNVVLFSPDDLRIFNDQPKERRRVMNQEITKVSTKYLLSLNQFQMYLKDRNALLKSDKI 168

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D ++   ++ QM+++   I   R + I  + S+I +  Q+ +   IKL +       F +
Sbjct: 169 DFNYLDILDEQMSKVEAHIIRERRKFIEVIQSVISKIYQELSGSQIKLEIAY---KTFVE 225

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               ++E+  +   + R+ D     T +G H  DLI    D+ + I   S G++++V++ 
Sbjct: 226 DTEEIEEKILEIHRESRQKDMEYHITKVGIHLDDLIFKMDDQNL-IYFASQGQKRMVMLS 284

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
             LA    I   T   PILLLD++ + LD  ++  L ++V
Sbjct: 285 FKLALLNYIKLMTKKQPILLLDDVLSELDYSRQKKLLQMV 324


>gi|259502127|ref|ZP_05745029.1| recombination protein F [Lactobacillus antri DSM 16041]
 gi|259169940|gb|EEW54435.1| recombination protein F [Lactobacillus antri DSM 16041]
          Length = 373

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 149/358 (41%), Gaps = 29/358 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  FRNY    + F     + +G N  GKTN+LEAI  LS  R  R  +  ++     
Sbjct: 6   LHLHHFRNYEDQTVHFAPGVNVLIGHNAQGKTNMLEAIYALSLTRSHRTTNDRELINWRE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            S     A + G+       + LE +  +  +  ++N +    + +    L      P  
Sbjct: 66  KS-----ASISGVVQKTSGKVPLELQFTKEGKRAKVNHLEQARLAQYIGQLNAILFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSS 185
             +  G    RRRF+D     +  ++      +  L+R RN+ L +  +    D      
Sbjct: 121 LSLVKGAPAVRRRFMDMEFSQMSSKYLYNASQYRSLLRQRNKYLKQLKYGQQHDQVLLDV 180

Query: 186 IEAQMAELGVKINIARVEMINALS----------SLIMEYVQKENFPHIKLSLTGFLDGK 235
           +  Q+A  G ++ +AR   +  L           SL  E ++      +K++    +D  
Sbjct: 181 LSDQLAAYGAELVVARFHFLQQLEKWAADLHYQISLNAEKLRLVYATQLKVTAETTVDDA 240

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           + Q     KE        GR++D  S  T+ GP R D+      K +  + GS G+Q+  
Sbjct: 241 YQQLLTIFKEN------KGREIDQGS--TMFGPQRDDIRFLVNGKNVQ-SFGSQGQQRTT 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            + + LA   L+   TG  P+LLLD++ + LD  ++  L   + D   Q F+T T  S
Sbjct: 292 ALAVKLAEIDLMKEQTGEYPLLLLDDVLSELDTVRQTHLLTAIQD-KVQTFLTTTSLS 348


>gi|139439855|ref|ZP_01773220.1| Hypothetical protein COLAER_02254 [Collinsella aerofaciens ATCC
           25986]
 gi|133774783|gb|EBA38603.1| Hypothetical protein COLAER_02254 [Collinsella aerofaciens ATCC
           25986]
          Length = 368

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 168/385 (43%), Gaps = 51/385 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+++ +R++ S RL  D   TI  G N  GKTN++EA+  L+ G  FR  + A++   G 
Sbjct: 8   LSVAHYRSFDSYRLALDEGVTILAGPNAAGKTNLIEALQLLTSGASFRHPTAAELVHDGV 67

Query: 70  PSFFSTFARVEGMEGLADISIKLE------TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            S      R+EG   + D+ +  E      +R+ +      +  V+  V+          
Sbjct: 68  GSCKVEL-RLEGDGRVLDMGLSAEDGKRSFSRNGKRCSAAGVRGVLPSVL---------- 116

Query: 124 WLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
              P  +D +  G S+ RR  LD     +  R+      + R +  RN LL E +     
Sbjct: 117 -FCPDHLDMVKRGASV-RRAALDDFGMQLSARYADLASTYGRCVTQRNALLKEAWCCREM 174

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKE--------------NFPHI--K 225
             +    +A  G  + + R+ +++ L+  +   Y Q                + P +  +
Sbjct: 175 LGAWNDSIARAGAALLVHRLALLDRLAGHVRTAYGQVASGEAANVSYASTLGDLPQVDDR 234

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
             L G+    +++   AL E   +++  G         TL+GPHR ++      ++   +
Sbjct: 235 EELKGW---AYERMLAALDEHADEEIRRG--------VTLVGPHRDEIEFAVAGRSAR-S 282

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
             S G+Q+ +++   +A   +  +  G AP+LLLD++ + LD ++R A  R++ D   Q 
Sbjct: 283 FASQGQQRTLVLAWKVAEVAVARDVLGTAPLLLLDDVMSELDGERRGAFLRLIGD-DIQT 341

Query: 346 FMTGTDKSVF-DSLNETAKFMRISN 369
            +T T+   F D L + AK + +  
Sbjct: 342 VITTTNLGYFTDDLLDRAKVVSMGE 366


>gi|77358985|ref|YP_338560.1| gap repair protein [Pseudoalteromonas haloplanktis TAC125]
 gi|97180877|sp|Q3IDE8|RECF_PSEHT RecName: Full=DNA replication and repair protein recF
 gi|76873896|emb|CAI85117.1| gap repair protein with nucleoside triP hydrolase domain, part of
           RecFOR complex that targets RecA to ssDNA-dsDNA junction
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 364

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 151/339 (44%), Gaps = 19/339 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  FRN  +L L       I  G+NG GKT++LEAI +LS G+ FR + +  +     
Sbjct: 6   LSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTSKHKSIIAHQQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWLVPS 128
             F      + G + + D+SI +     ++    L+I     R + EL + + +  + P 
Sbjct: 66  EQFV-----IHGRKAIHDLSIPIGISKTQAGETNLKIQGKASRKISELAQLMPVQIITPE 120

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWCSS 185
              +F G   ERR+FLD  +F ++         F ++++ RN LL    + YFD      
Sbjct: 121 SYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKSKPKNYFDQ--IKF 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + +   L  +IN  R+  I+       + +  E      L+L   L+  F+  +    E
Sbjct: 179 WDKEFVRLAEQINKLRMAYISRFKQQFFDKMCAE------LTLIRDLEISFNAGWKE-SE 231

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             +  L    + D+    T  GPH++D        ++     S G+ K++L  + +    
Sbjct: 232 SLSDALELNFERDARQGFTSKGPHKADFSFSVAGSSVENIF-SRGQLKLLLYALKVTQNS 290

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
           LI + T    ILL+D++ + L ED +  + +++    SQ
Sbjct: 291 LIESETDKQSILLIDDLPSELSEDTKEKVGQLLAHCSSQ 329


>gi|121587253|ref|ZP_01677026.1| recF protein [Vibrio cholerae 2740-80]
 gi|153802501|ref|ZP_01957087.1| recF protein [Vibrio cholerae MZO-3]
 gi|229520186|ref|ZP_04409613.1| DNA recombination and repair protein RecF [Vibrio cholerae TM
           11079-80]
 gi|262189753|ref|ZP_06048108.1| DNA recombination and repair protein RecF [Vibrio cholerae CT
           5369-93]
 gi|297581952|ref|ZP_06943872.1| recombination protein recF [Vibrio cholerae RC385]
 gi|121548499|gb|EAX58555.1| recF protein [Vibrio cholerae 2740-80]
 gi|124121971|gb|EAY40714.1| recF protein [Vibrio cholerae MZO-3]
 gi|229342780|gb|EEO07771.1| DNA recombination and repair protein RecF [Vibrio cholerae TM
           11079-80]
 gi|262034367|gb|EEY52752.1| DNA recombination and repair protein RecF [Vibrio cholerae CT
           5369-93]
 gi|297533819|gb|EFH72660.1| recombination protein recF [Vibrio cholerae RC385]
          Length = 363

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 169/366 (46%), Gaps = 20/366 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +   
Sbjct: 6   LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65

Query: 70  PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              F    R+      +D   + + +  + D S   ++I     + + +L + L +  + 
Sbjct: 66  SELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184
           P    + +    +RR F+D  VF  +P        F+RL + RN LL   + Y + S+  
Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I+  R   +N L + + E + +   P   + L  +   + DQ + ++ 
Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  ++       D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++K
Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351

Query: 364 FMRISN 369
              +++
Sbjct: 352 TFHVAH 357


>gi|332084890|gb|EGI90073.1| DNA replication and repair protein recF [Shigella boydii 5216-82]
          Length = 357

 Score = 90.1 bits (222), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLIKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------K 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|298372052|ref|ZP_06982042.1| RecF protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274956|gb|EFI16507.1| RecF protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 364

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 155/356 (43%), Gaps = 19/356 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +NI  +RN     LVF  +  +F G+NG+GKTN+L+A+ +LS  +    A    + R
Sbjct: 3   LKKINILNYRNIEESELVFSPKINLFWGNNGMGKTNLLDAVYYLSFCKSHLNAIDNQLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                FF         + +A +S  ++ R  R  + L       R+ D + + + +  + 
Sbjct: 63  -HDTDFFIIQGEYVFPDSIAKVSCSVKRR--RKKQFLYNKKEYERLADHIGR-IPLVLVS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSS 185
           PS   + S  S ERRRF+D ++   +  +   +I +   ++ RN +L    Y D +    
Sbjct: 119 PSDSSLISEGSDERRRFMDIIISQYNREYLDNLISYNSALKSRNAMLKNNDYIDETMLEV 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++      I   R E I     +  ++ ++ +    ++ L         +   +L+ 
Sbjct: 179 FDEKLCANAAPIFRERTEFITNFIPVFKDFYRRISNKKEEVDL---------RYLSSLEH 229

Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFLAH 303
            E   KL   R  D     T  G H+ DL  D      ++    S G+ K  LV + LA 
Sbjct: 230 TELRDKLLQSRAKDKYLGFTTAGIHKDDL--DMTLDGFSLKRTASQGQSKSYLVAMKLAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDK-RNALFRIVTDIGSQIFMTGTDKSVFDSL 358
              +   +G  PILLLD+I   LD ++  N +  I  D   QIF+T T+    D L
Sbjct: 288 FVFLKQISGKTPILLLDDIFDKLDAERVENIIREISEDDFGQIFITNTNHEHIDKL 343


>gi|238061916|ref|ZP_04606625.1| recombination protein F [Micromonospora sp. ATCC 39149]
 gi|237883727|gb|EEP72555.1| recombination protein F [Micromonospora sp. ATCC 39149]
          Length = 377

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 160/363 (44%), Gaps = 36/363 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR+Y  + +  +    I +G NG GKTN++EA+ +++     R A+ A + R
Sbjct: 3   VRRLELVDFRSYERVGVDLEPGPNILIGANGTGKTNLVEALGYVATLDSHRVATDAPLVR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +G+ S     A V +G E    + ++LE    ++ R         R  D L   LR+   
Sbjct: 63  LGATSAVIRCAVVHDGRE----LLVELEIVPGKANRARLGRSPARRARDVLGA-LRLVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------- 178
            P    +  G   ERRR+LD ++ +  PR+     D+ER+++ RN LL   Y        
Sbjct: 118 APEDLELVRGDPAERRRYLDDLLVSRQPRYAGVRADYERVIKQRNALLRTSYLARKTGGT 177

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----------PHIK 225
              D S  +  +  +A  G ++   R+E++ AL   + +                 P ++
Sbjct: 178 RGGDLSTLAVWDTHLARHGAELLAGRLELVAALGPHVTKAYDAVAAGRGAAGIAYRPSVE 237

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           L+     D   D++  A     A      R  +     TL+GPHR DL +          
Sbjct: 238 LT-----DPVADRAALAEALLAALAE--SRSAEVERGTTLVGPHRDDLALTLGPLPAK-G 289

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           + S GE     + + LA   L+  + G  P+L+LD++ A LD  +R  L  +V    SQ+
Sbjct: 290 YASHGESWSFALALRLAGYDLL-RSDGIEPVLVLDDVFAELDVGRRERLAGLVGG-ASQL 347

Query: 346 FMT 348
            +T
Sbjct: 348 LVT 350


>gi|221195223|ref|ZP_03568279.1| DNA replication and repair protein RecF [Atopobium rimae ATCC
           49626]
 gi|221185126|gb|EEE17517.1| DNA replication and repair protein RecF [Atopobium rimae ATCC
           49626]
          Length = 361

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 148/328 (45%), Gaps = 9/328 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           +++  FRN+  L + F    TI VG N VGKTN +EA+  L+ G  FR+ +   +   G 
Sbjct: 8   ISLVNFRNFRMLSVDFSQSITILVGHNAVGKTNTIEALQMLTAGYSFRKPTPVQLMLEGE 67

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                  A + G   + D+S  + +      R  + N       D     + + +    +
Sbjct: 68  KQS-KIHAHLTGDGRVIDLSCTISSLR----RQYEKNGKKCHATDIPGDLMSVLFTPDDL 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             I    S  RR  +D      +  + + +  + R +  RNRLL E   D S  S+ +  
Sbjct: 123 ACIKRSASY-RRGEIDDFGKQANKTYAKVLAAYLRSIEQRNRLLKENVVDFSLLSAWDTS 181

Query: 190 MAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLTGFL-DGKFDQSFCALKEEY 247
           +A  G  +  AR+++   LS+   E Y Q      + L     + +   DQ+   L +++
Sbjct: 182 VALGGATLLCARLKLFRRLSAKTSEIYKQISGGEDLVLRYESSIGEISADQTKEELLDKF 241

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
              L D   +D   ++T +GPHR D++     K   + +GS G+Q+ V++ + +A   + 
Sbjct: 242 LSSLKDAHGVDERRQQTTVGPHRDDIVFLINGKDARM-YGSQGQQRSVILALKMAEVLVS 300

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALF 335
               G  P+LLLD++ + LD+ +R A+ 
Sbjct: 301 EEILGTKPLLLLDDVMSELDKSRREAIM 328


>gi|145634167|ref|ZP_01789878.1| recombination protein F [Haemophilus influenzae PittAA]
 gi|145268611|gb|EDK08604.1| recombination protein F [Haemophilus influenzae PittAA]
          Length = 359

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 161/367 (43%), Gaps = 17/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    I ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGKIQESQHQWSIGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++      F Q +    
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +Y + L    + D     T  GP ++D    +  + + +    S G+ K+++  + LA 
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362
              +        I L+D+ ++ LD+DKR  L   +   GSQ+F+T   K     +  E  
Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQDKRALLAERLQQSGSQVFVTAITKRQLKEMQVENK 345

Query: 363 KFMRISN 369
           K   + N
Sbjct: 346 KMFSVHN 352


>gi|312871309|ref|ZP_07731407.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           3008A-a]
 gi|311093323|gb|EFQ51669.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           3008A-a]
          Length = 373

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++ +   
Sbjct: 6   LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    A + G     +I   L+       +   IN +  + +      +      P  
Sbjct: 63  --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D     I+  +   +  + ++++ RN  L    ++   D  + + 
Sbjct: 121 LSLIKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNAYLKQISSKKASDPIFLNV 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242
           +  Q+A L  ++   RV  ++ L         KEN       ++     LD ++  SF  
Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQREILDIEYKASFPE 231

Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             E+      Y K L  F+  K++ M    TL+GPHR DL V + +K     + S G+Q+
Sbjct: 232 FDEKDSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            +++ I LA   L+       PILLLD++ + LD  ++  L   +    +Q F+T TD
Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQTFITTTD 347


>gi|312873299|ref|ZP_07733354.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           2052A-d]
 gi|311091179|gb|EFQ49568.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           2052A-d]
          Length = 373

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++ +   
Sbjct: 6   LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    A + G     +I   L+       +   IN +  + +      +      P  
Sbjct: 63  --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D     I+  +   +  + ++++ RN  L    ++   D  + + 
Sbjct: 121 LSLIKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242
           +  Q+A L  ++   RV  ++ L         KEN       ++     LD ++  SF  
Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQREILDIEYKASFPE 231

Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             E+      Y K L  F+  K++ M    TL+GPHR DL V + +K     + S G+Q+
Sbjct: 232 FDEKDSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            +++ I LA   L+       PILLLD++ + LD  ++  L   +    +Q F+T TD
Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQTFITTTD 347


>gi|77917621|ref|YP_355436.1| DNA replication and repair protein [Pelobacter carbinolicus DSM
           2380]
 gi|97180840|sp|Q3A8M6|RECF_PELCD RecName: Full=DNA replication and repair protein recF
 gi|77543704|gb|ABA87266.1| DNA replication and repair protein RecF [Pelobacter carbinolicus
           DSM 2380]
          Length = 363

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 149/353 (42%), Gaps = 24/353 (6%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  +RN  +  L  +    +  GDN  GKTN LEAI  L   + FRR    ++  IGS  
Sbjct: 8   LHNYRNIEAAELCPEENFNLLCGDNAQGKTNTLEAIYLLGHFKSFRRGRNEEL--IGSAD 65

Query: 72  FFSTFARVEG---MEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
                 RV+G    +GL + +SI + T D +++   +IN    R  +E+          P
Sbjct: 66  ---RHTRVQGEFLRDGLRETVSITI-TGDKKNI---EINGKRPRQSNEMFGRFPSVLFAP 118

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---SWCS 184
               +  G    RR  LDR +    P        ++R +R RN LL  G        W  
Sbjct: 119 EEVSLPKGFPAGRRALLDRALCQTRPSFLDHARAYQRCLRQRNILLKSGAAAPIVLPWTE 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +    A + +        ++  L  +  E         + L      D   D     LK
Sbjct: 179 ELIQTGAMVRLARRRYLDRLLPLLRDIYREICSGRE--SVNLVYPSESDNLSD-----LK 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           EE    L   +  ++    T++GPHR D +    D+ + + +GS G+Q+  ++    A  
Sbjct: 232 EELRSNLEREQSRETKYGMTMVGPHRDDPVFMVDDRVLGL-YGSQGQQRSFILAFKTAQI 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
             +   TG+ P+LLLD++++ LD  +++  FR +     Q+F+T T+ S   +
Sbjct: 291 IDLEKETGYTPLLLLDDMTSELDRKRQDYFFRFLHQRQGQVFITCTELSPLQN 343


>gi|186893347|ref|YP_001870459.1| recombination protein F [Yersinia pseudotuberculosis PB1/+]
 gi|226737851|sp|B2JYI8|RECF_YERPB RecName: Full=DNA replication and repair protein recF
 gi|186696373|gb|ACC87002.1| DNA replication and repair protein RecF [Yersinia
           pseudotuberculosis PB1/+]
          Length = 361

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 151/361 (41%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHEC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     RV+  E  A + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  AEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     S  + I A 
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ----VSRYTQIRAW 177

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
             E+     I   E I+   +   + +  +      L L  F    F Q     + +Y +
Sbjct: 178 DQEI-----IPLAERISEWRAAYSDAIAADISATCALFLPEFALSFFFQRGWDKESDYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T +GPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLARQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+ 
Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351

Query: 369 N 369
           +
Sbjct: 352 H 352


>gi|255746804|ref|ZP_05420750.1| DNA recombination and repair protein RecF [Vibrio cholera CIRS 101]
 gi|262155883|ref|ZP_06029005.1| DNA recombination and repair protein RecF [Vibrio cholerae INDRE
           91/1]
 gi|262167102|ref|ZP_06034817.1| DNA recombination and repair protein RecF [Vibrio cholerae RC27]
 gi|255735561|gb|EET90960.1| DNA recombination and repair protein RecF [Vibrio cholera CIRS 101]
 gi|262024488|gb|EEY43174.1| DNA recombination and repair protein RecF [Vibrio cholerae RC27]
 gi|262030335|gb|EEY48977.1| DNA recombination and repair protein RecF [Vibrio cholerae INDRE
           91/1]
          Length = 357

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 168/364 (46%), Gaps = 20/364 (5%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +     
Sbjct: 2   IQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNECSE 61

Query: 72  FFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            F    R+      +D   + + +  + D S   ++I     + + +L + L +  + P 
Sbjct: 62  LF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIHPE 119

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSI 186
              + +    +RR F+D  VF  +P        F+RL + RN LL   + Y + S+    
Sbjct: 120 GFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW--- 176

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++A L  +I+  R   +N L + + E + +   P   + L  +   + DQ + ++ E+
Sbjct: 177 DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSILEK 235

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
             ++       D     T  GP+++DL +      +     S G+ K+++  + +A  + 
Sbjct: 236 NFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQGQH 287

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++K  
Sbjct: 288 LTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSKTF 347

Query: 366 RISN 369
            +++
Sbjct: 348 HVAH 351


>gi|325969852|ref|YP_004246043.1| DNA replication and repair protein RecF [Spirochaeta sp. Buddy]
 gi|324025090|gb|ADY11849.1| DNA replication and repair protein RecF [Spirochaeta sp. Buddy]
          Length = 360

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 157/366 (42%), Gaps = 31/366 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L  ++FRN  S R+  D +    +G NG GKTN+LEA+  L  G  FR     ++T  G 
Sbjct: 6   LWTNQFRNLVSQRIPVDNRQVFLIGPNGQGKTNLLEALYALCYGSSFRTNQLKELTVHGE 65

Query: 70  PSFFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            +F     ++ G+  L D  I+    LE +D +  R + ++D  ++   EL  +  I  +
Sbjct: 66  KAF-----KIVGIY-LGDDQIRHTLMLEWKDGK--RSMSLDDREVKDRKELIYN--IPCI 115

Query: 126 VPSMDRIF--SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           V S D IF   G   +RRRF D+ +   +P     +  +  ++R RN+ + +G F+    
Sbjct: 116 VFSHDDIFFIKGEPEQRRRFFDQTMSMYNPLFFDDLRRYRLVLRQRNQAIKDGRFE--LL 173

Query: 184 SSIEAQMAELGVKINIARV----EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
              + Q+A+ G+ I   R     E      S+  +  Q     HI+   +         +
Sbjct: 174 DLYDLQLAKYGLAIQSERTRAVYEFDQIFPSMYKDVSQNTMEVHIEYHPSW--------N 225

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
            CA +EE  + L   R  D     T  G HR   +V    +  +   GSTG+ ++  +  
Sbjct: 226 DCATEEEIVEYLARTRSRDISMLTTTSGIHRDRFLVMEAGQPFSQT-GSTGQLRLASLIF 284

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
             A        TG  P++L+D++   LD +KR     ++       F    ++  F  L 
Sbjct: 285 RTAQMAFFQKKTGKEPLILVDDVLLELDFEKREHFLHLMQTYCQAFFTFLPEEHYFSELA 344

Query: 360 ETAKFM 365
           E    +
Sbjct: 345 EEGALL 350


>gi|229524915|ref|ZP_04414320.1| DNA recombination and repair protein RecF [Vibrio cholerae bv.
           albensis VL426]
 gi|229338496|gb|EEO03513.1| DNA recombination and repair protein RecF [Vibrio cholerae bv.
           albensis VL426]
          Length = 363

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 169/366 (46%), Gaps = 20/366 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +   
Sbjct: 6   LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65

Query: 70  PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              F    R+      +D   + + +  + D S   ++I     + + +L + L +  + 
Sbjct: 66  SELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184
           P    + +    +RR F+D  VF  +P        F+RL + RN LL   + Y + S+  
Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I+  R   +N L + + E + +   P   + L  +   + DQ + ++ 
Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  ++       D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 240 EKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++K
Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADGLKGTGAQVFVSSITESQVADMLDESSK 351

Query: 364 FMRISN 369
              +++
Sbjct: 352 TFHVAH 357


>gi|313112549|ref|ZP_07798213.1| putative recombination protein F [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310625131|gb|EFQ08422.1| putative recombination protein F [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 373

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 166/374 (44%), Gaps = 42/374 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L ++ +RN A+ +L    + T+  G+NG GKTN+LEAI  L+ G+ FR    A++
Sbjct: 1   MRLLSLEVANYRNIAAAQLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60

Query: 65  TRIGSPSFFSTFARVEGM-----------EGLADISIKLETRD-DRSVRCLQINDVVIRV 112
            R G      TFA +E +           +  A++ I + T D  R  R   +N    + 
Sbjct: 61  VRRG-----ETFAVLEAVTQRTRQEDQEPDEPANVRITVGTPDAQRPGRYASVNGSPPKR 115

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
              L          P    +  G    RRRFLD  +  + P +      + R ++ +N L
Sbjct: 116 AAGLAGSFPAVVFDPGHLSLVKGAPEGRRRFLDAALCQLYPGYLATYRRYVRALQQKNAL 175

Query: 173 L--TEGYFDSSW---CSSIE---AQMAELGVKINIARVEMINALSSL-IMEYVQKENFPH 223
           L  + G  +  W   C+ +E    ++A  G  I   R E +  L+ L    Y +     H
Sbjct: 176 LRHSAGGTERPWAEKCALLEVLNVELAAQGEAIQKRRREYLALLTPLACANYAE---LSH 232

Query: 224 IKLSLTGFLDGKFDQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               +      +F+    +  LK+   ++L  G        ++L G HR D+ +   D+ 
Sbjct: 233 GAERMAVRYAAQFEPGGLSALLKQRQNEELRAG--------QSLCGIHREDVELLLDDQP 284

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
             +   S G+Q+ V++ + +A A   +  TG  P+LLLD++ + LDE ++  L   + + 
Sbjct: 285 AKV-FASQGQQRSVVLSLKMAEAAAAARITGEHPVLLLDDVLSELDEGRKQYLLTRMKE- 342

Query: 342 GSQIFMTGTDKSVF 355
             Q F+T  D + F
Sbjct: 343 -KQTFVTSCDDTAF 355


>gi|120435150|ref|YP_860836.1| DNA replication and repair protein RecF [Gramella forsetii KT0803]
 gi|226737803|sp|A0LZH4|RECF_GRAFK RecName: Full=DNA replication and repair protein recF
 gi|117577300|emb|CAL65769.1| DNA replication and repair protein RecF [Gramella forsetii KT0803]
          Length = 359

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 169/379 (44%), Gaps = 40/379 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N  +    FD +    VG+NGVGKTN+L++I  LS G+     SY +   
Sbjct: 3   LKNLSLLNYKNLKTAEFDFDEKINCLVGNNGVGKTNVLDSIYLLSFGK-----SYFNPIT 57

Query: 67  IGSPSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             + +  S F  VEG     D + K L +      + ++ N+   +  ++++ H+     
Sbjct: 58  SQNINHDSDFFVVEGEFKKNDKAEKILASAKKGQKKIIKRNN---KAYEKVSDHI---GF 111

Query: 126 VPSM-------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----T 174
           +P++       D I  G S  RR+F+D ++   D  +  +++ + +L+  RN LL     
Sbjct: 112 IPTVIISPADRDLIIEG-SETRRKFMDGVISQSDQSYLNKLLQYTKLVSQRNSLLKYFAA 170

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLTGFLD 233
              F+         QM+ LG  +   R E +     +  + Y    N   I      +  
Sbjct: 171 NNTFERDTLEVYNLQMSSLGQDLFEKRKEFLKEFIPIFNKRYADITNNKEI--VDINYKS 228

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             FD S   L EE  +K       D   + T +G H+ DL  +     I    GS G+QK
Sbjct: 229 QLFDNSLANLLEENLQK-------DMALQYTSVGTHKDDLSFEIEGHPIK-KFGSQGQQK 280

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTD- 351
             L+ + LA    I   +   PILLLD+I   LDE++   +  +V TD   QIF++ T  
Sbjct: 281 SFLIALKLAQFDFIKKISKVNPILLLDDIFDKLDENRVAHIVALVATDELGQIFLSDTHA 340

Query: 352 ---KSVFDSLNETAKFMRI 367
              + V  S N++ K  ++
Sbjct: 341 ERTEKVVKSSNQSYKIFKL 359


>gi|260891933|ref|YP_003238030.1| DNA replication and repair protein RecF [Ammonifex degensii KC4]
 gi|260864074|gb|ACX51180.1| DNA replication and repair protein RecF [Ammonifex degensii KC4]
          Length = 358

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 155/355 (43%), Gaps = 25/355 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  FRNY  L     +   +  G N  GKTN+LEA+ F+  GR FR     ++ R
Sbjct: 3   IRSLFLRNFRNYCELEWEPSSGINLLKGPNAAGKTNLLEALYFVLCGRSFRTLREEEIVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G      T   ++G    A   I+ E R  +  + L          D   + + +    
Sbjct: 63  TG-----ETTTLIKGKIATAWGEIETEVRFKKGTKLLFYQGKPASRRDFPGEKV-VLLFR 116

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    + +G   ERR F +R++  + P +   +  ++R +  RN LL     +G     W
Sbjct: 117 PEDLLVVTGTPAERRGFFNRVLAKLVPGYEEVLTRYQRALEQRNALLRLPEKKGEELEIW 176

Query: 183 CSSIEAQMAELGVKINIARVEMINAL-SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
             ++ +  A L  ++ +  + +I  L SSL  E V K      KL L    +        
Sbjct: 177 TEALVSAGALL-YRLRVEGLGLIGPLTSSLYRELVGK------KLVLRYATNAVSPAKEK 229

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGI 299
            L E++A+ L    + + +  +TL+GPHR D   IV+  D       GS GE +  ++ +
Sbjct: 230 PLAEQFAEALSALAEKEKVLGQTLVGPHRDDFLFIVEGEDLRY---KGSRGEVRAAVLAL 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            LA A+L+   TG   I  LD++ +  D  +R AL   + +   Q F+T  +  +
Sbjct: 287 KLAEAKLLEKMTGERTIFFLDDVFSEFDPQRRRALALYLEE--RQSFVTSAEPEL 339


>gi|294638325|ref|ZP_06716578.1| DNA replication and repair protein RecF [Edwardsiella tarda ATCC
           23685]
 gi|291088578|gb|EFE21139.1| DNA replication and repair protein RecF [Edwardsiella tarda ATCC
           23685]
          Length = 361

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 158/368 (42%), Gaps = 16/368 (4%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ +  L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      
Sbjct: 3   RMALTRLMIRDFRNIESADLAPSSGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSQQAGR 62

Query: 64  VTRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           V R    +F     R++ G E    + +    + D  VR   I+      V EL + L +
Sbjct: 63  VIRHDCATFI-LHGRIDAGGEREWAVGLSKNRQGDSKVR---IDGSDGHKVAELAQMLPM 118

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             + P    + +G    RR FLD   F  D        +  RL++ RN  L +     S 
Sbjct: 119 QLITPEGFTLLNGGPKYRRAFLDWGCFHGDGDFFTAWSNLRRLLKQRNAALRQ-VTRYSQ 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + ++  L  K++  R     A++  I      +  P   LS + F+ G +D+    
Sbjct: 178 IRPWDQELVPLANKVSALRAAYSEAIAQDIAATC-SQFLPEYALSFS-FMRG-WDR---- 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            + EY + L    + D     T +GPH++D  +   D        S G+ K+++  + LA
Sbjct: 231 -ESEYGELLERHFERDRALTYTALGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLA 288

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNET 361
               ++  +G   + L+D+ ++ LD  +R  L   +   G+Q+F++  +   V D ++E 
Sbjct: 289 QGEYLTRHSGRQCLYLIDDFASELDAGRRRLLAERLKSTGAQVFVSAVNADQVGDMVDEK 348

Query: 362 AKFMRISN 369
            K  R+  
Sbjct: 349 GKMFRVEQ 356


>gi|268318289|ref|YP_003292008.1| DNA replication and repair protein RecF [Rhodothermus marinus DSM
           4252]
 gi|262335823|gb|ACY49620.1| DNA replication and repair protein RecF [Rhodothermus marinus DSM
           4252]
          Length = 387

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 154/372 (41%), Gaps = 16/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  FR +   R+ F  +  +  G NG GKTN+LEAI +L   + F  A  +   R
Sbjct: 3   LRSLRVRNFRAHEDTRVTFAPRINLIGGPNGAGKTNLLEAIHYLCLSKSFLAAQDSYALR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+P FF       G +   ++ ++L        R    N   +  + +L   L +  L 
Sbjct: 63  EGAP-FFELEGVFAGTQR-PELVVRLIYVPGEGKRVF-FNGAPLERLADLVGELPVVVLS 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFDSS 181
           P+   +  G   ERRRFLD ++    P + + ++ + R +R RN LL            S
Sbjct: 120 PADQALTGGPPEERRRFLDNLLSQAYPAYLQDLLQYRRALRQRNELLARWRRHPASVQPS 179

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ----KENFPHIKLSLTGFLDGKFD 237
              S + ++  LG ++   R+  +   ++ + E           P I+      LD + D
Sbjct: 180 LLESWQEELVALGSRLIHRRLRFVQEFAAYLAEAHACLGLSAEIPRIEYVTVAPLDPEAD 239

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
               A+   +  +L      +    RTL GPHR +L++      +   + S G+ +++ +
Sbjct: 240 PE--AIAAAFRARLQRLAPREREQGRTLTGPHRDELVLRLNGLEVR-RYASQGQHRIMGL 296

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA    +       P+LLLD++   LD  +   +  ++   G QI  +    +  D 
Sbjct: 297 ALKLAKFFYLRARRDETPLLLLDDVFDGLDRYRTQRILELLQH-GEQIEQSFVTSARLDL 355

Query: 358 LNETAKFMRISN 369
           L E        N
Sbjct: 356 LQELQTLAAPEN 367


>gi|283457092|ref|YP_003361655.1| recombinational DNA repair ATPase [Rothia mucilaginosa DY-18]
 gi|283133070|dbj|BAI63835.1| recombinational DNA repair ATPase [Rothia mucilaginosa DY-18]
          Length = 450

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 161/376 (42%), Gaps = 50/376 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  +++ ++R YA L L   A  T+F+G NGVGKTNI+EAI + +     R +    +
Sbjct: 38  VYIDHISLLDYRTYALLSLPLSAGVTVFLGSNGVGKTNIVEAIDYAASLSSHRVSHDGPL 97

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+      + R   + G      + E    +S R ++IN        E     R   
Sbjct: 98  VRAGA---SRAYIRTRTVRGSQQTVTEFEIAPGQSNR-VRINRAAPVRAKEALGIARTVL 153

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P   ++  G    RRRF+D +  ++ P       ++ER++R RN LL     ++    
Sbjct: 154 FSPEDLQLVKGDPAGRRRFVDDLASSLRPVVSGYRSEYERILRQRNSLLKSMQRNARDEN 213

Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
             S  S  + Q++ LG ++  AR  ++                P ++ +  G  DG  + 
Sbjct: 214 ALSTLSVWDEQLSTLGAQLLSARFRLLQRF------------LPQLRRAYAGLTDGSKEV 261

Query: 239 SF-----------------CALK--EEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIV 275
            F                  AL   E+  + L  G   R+ D + R  TL+GPHR D+ +
Sbjct: 262 GFNYESTVFSSMGERSIEHAALMRVEDLKEALMRGFAERRRDEIERGVTLVGPHREDITL 321

Query: 276 DYCDKAIT--IAHGSTGEQKVVL-VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
                 +    +HG +    + L +  +  H     ++ G +PIL+LD++ A LD  +R+
Sbjct: 322 LLGGMPVKYFASHGESWSFALALKLASWFVHVE-DDSSVGSSPILILDDVFAELDSARRH 380

Query: 333 ALFRIVTDIGSQIFMT 348
            L  +V D   Q+ +T
Sbjct: 381 RLGAMVAD-AEQVLIT 395


>gi|260581930|ref|ZP_05849726.1| recombinational DNA repair ATPase [Haemophilus influenzae NT127]
 gi|260095123|gb|EEW79015.1| recombinational DNA repair ATPase [Haemophilus influenzae NT127]
          Length = 359

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 161/367 (43%), Gaps = 17/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLNFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++      F Q +    
Sbjct: 176 IWDVELAKLAHQVSEWRAEYAEALCPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +Y + L    + D     T  GP ++D    +  + + +    S G+ K+++  + LA 
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362
              +        I L+D+ ++ LD+DKR  L   +   GSQ+F+T   K     +  E  
Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQDKRALLAERLQQSGSQVFVTAITKRQLKEMQVENK 345

Query: 363 KFMRISN 369
           K   + N
Sbjct: 346 KMFSVHN 352


>gi|182414266|ref|YP_001819332.1| DNA replication and repair protein RecF [Opitutus terrae PB90-1]
 gi|259563666|sp|B1ZSD3|RECF_OPITP RecName: Full=DNA replication and repair protein recF
 gi|177841480|gb|ACB75732.1| DNA replication and repair protein RecF [Opitutus terrae PB90-1]
          Length = 366

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 151/352 (42%), Gaps = 21/352 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  FRN     L F  +    VG NG GKTN+LEA  FL+  R FR      +
Sbjct: 1   MRLRHLTLRHFRNVGFAALAFSGRQQFLVGLNGQGKTNLLEAAGFLTALRSFRTTDNKLL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +   +        G   ++IKL  RD + +        V R+ D L +   +  
Sbjct: 61  IQHGQHTGAISSELTHEQLGDTKLTIKLR-RDGKELWSDATR--VTRLADHLGRFPTV-- 115

Query: 125 LVPSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  S D  +  G    RRR+LD  + ++D  + R +  + R +  RN LL  G    +  
Sbjct: 116 VFSSQDLHLVRGAPALRRRWLDLTLASMDAGYLRALQTYSRALADRNALLKRGNAADAEL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKLSLTGFLDGKFDQS 239
            + E Q+A   V +   R   +  L + +     +    +    + L      DG   ++
Sbjct: 176 DAFEQQLAPAAVALLATRTAALALLGAKLAVAYDRLCAGDAAEKVGLHYEPSFDGPSTEA 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVG 298
           + A       +    R  D+  R TL+GPHR D   V     A   A  S G+Q+ +++ 
Sbjct: 236 WLA-------RFESSRGRDAQFRTTLVGPHRDDFSFVVRGTAAKDFA--SEGQQRSLVLA 286

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + LA A      +G  P+LL D++   LD  +R   +  + D  SQI  TGT
Sbjct: 287 LRLAQAEWGHEKSGTRPVLLADDVLGELDPLRRRRFWASI-DPESQILATGT 337


>gi|108248035|emb|CAK32505.1| hypothetical protein [uncultured microorganism]
          Length = 370

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 156/364 (42%), Gaps = 45/364 (12%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD---VTRIG 68
           I  ++N A  RL F  +    +G+NG GKTN+L+AI +LS  R F  AS +D   V R G
Sbjct: 8   IVNYKNIAEARLEFSPKLNCLIGNNGQGKTNVLDAIYYLSMCRSF--ASTSDNSAVIRHG 65

Query: 69  SPSFF--STFARVEGMEGLADISIKLE-------TRDDRSVRCLQINDVVIRVVDELNKH 119
            P      ++ R    E   +IS+ L+        RD +  + L  +  ++ VV      
Sbjct: 66  EPYMMLQGSYTR---QETPLEISVALQRGKRKVVRRDGKEYQRLSQHIGLLPVV------ 116

Query: 120 LRISWLVPSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
                +V  MD  +  G   ERRRF+D ++   D  +   +I + + +  RN ++ +   
Sbjct: 117 -----MVSPMDWDLVRGSGEERRRFMDLIISQNDNEYLDALIRYNKAVEQRNAMIKKEMR 171

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGK 235
           D     ++E  MA+    I+  R + +     + M Y       +  +SL   +   DG 
Sbjct: 172 DPLLYETVEQAMAQHAALIHQRRSQWVEQFLPIFMHYYHAVAGDNETVSLHYKSHLNDGT 231

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
             +   A +E            D +   T  G HR D+ +   D  +    GS G+ K  
Sbjct: 232 MQEHLAATRER-----------DLIIGHTTRGIHRDDIELMLDDYPMRHT-GSQGQCKTY 279

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSV 354
            + +  A    +       PILLLD+I   LD  +   +  +V +D   QIF+T T+++ 
Sbjct: 280 TIALRFAQFDFLKANNATVPILLLDDIFDRLDASRVERIVDVVSSDRFGQIFITDTNRTH 339

Query: 355 FDSL 358
            D +
Sbjct: 340 LDEI 343


>gi|169627112|ref|YP_001700761.1| recombination protein F [Mycobacterium abscessus ATCC 19977]
 gi|169239079|emb|CAM60107.1| DNA replication and repair protein RecF [Mycobacterium abscessus]
          Length = 401

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 164/372 (44%), Gaps = 30/372 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++  + L  +   T+FVG NG GKTN++EA+ + S     R A+ A +
Sbjct: 20  VYVRQLGLRDFRSWERVNLELEPGRTVFVGPNGYGKTNLVEALWYSSTLGSHRVATDAPL 79

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+  +  ST    +G E    ++I LE    R+ +  ++N   +R   E+   L   
Sbjct: 80  IRTGAERAVVSTIVVNDGRE----LAIDLEIAAGRANKA-RVNRSPVRSPREVLGILHAV 134

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------ 177
              P    +  G   +RRRFLD ++    PR      D+++++R R  LL          
Sbjct: 135 LFAPEDLSLVRGDPADRRRFLDDLLIQRRPRMAGVRADYDKVLRQRTALLKTAMAALRQR 194

Query: 178 FDSSWCSSIEAQMAEL---GVKINIARVEMINALSSLIMEYVQ---KENFP---HIKLSL 228
            D S   +++     L   G ++  AR+E++  L  L+ +  Q     + P     + S+
Sbjct: 195 HDQSVLDTLDVWDGHLVAHGAELLSARIELVGELHPLVEKSYQLLAPASRPADIAYRSSV 254

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
            G   G    S   L +     L   R  +      L+GPHR DL +   D        S
Sbjct: 255 EGVEAG---LSVEHLADALQAGLVAKRSAEIERGVCLVGPHRDDLELRLGDGPAK-GFAS 310

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+    G  P+L+LD++ A LD  +R +L  +  D   Q+ +T
Sbjct: 311 HGESWSFALALRLAAFDLL-RADGTDPVLMLDDVFAELDGARRRSLATVAAD-AEQVLVT 368

Query: 349 GTDKSVFDSLNE 360
               +V D + E
Sbjct: 369 A---AVPDDVPE 377


>gi|145638187|ref|ZP_01793797.1| recombination protein F [Haemophilus influenzae PittII]
 gi|145272516|gb|EDK12423.1| recombination protein F [Haemophilus influenzae PittII]
 gi|309751343|gb|ADO81327.1| DNA replication and repair protein RecF [Haemophilus influenzae
           R2866]
          Length = 359

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 161/367 (43%), Gaps = 17/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLHFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++      F Q +    
Sbjct: 176 VWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +Y + L    + D     T  GP ++D    +  + + +    S G+ K+++  + LA 
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362
              +        I L+D+ ++ LD+DKR  L   +   GSQ+F+T   K     +  E  
Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQDKRALLAERLQQSGSQVFVTAITKRQLKEMQVENK 345

Query: 363 KFMRISN 369
           K   + N
Sbjct: 346 KMFSVHN 352


>gi|256374164|ref|YP_003097824.1| recombination protein F [Actinosynnema mirum DSM 43827]
 gi|255918467|gb|ACU33978.1| DNA replication and repair protein RecF [Actinosynnema mirum DSM
           43827]
          Length = 371

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 21/355 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +++FR++    L F+    + VG NG GKTN++EA+ +++     R AS A + R
Sbjct: 3   VRHLQVTDFRSWEHADLAFEPGVNVLVGRNGHGKTNLVEALGYVATLGSHRVASDAPLIR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+       A V EG E L    ++LE    R+ R       V R  D L   LR    
Sbjct: 63  SGAQRAVVRTAVVNEGRELL----VELEITPGRANRARVNRGPVPRPRDVLGI-LRTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184
            P    +  G   ERRRFLD ++    PR+     D+ER++R R  LL T     S+   
Sbjct: 118 APEDLSLVRGDPGERRRFLDELLTLRAPRYAGVRSDYERVLRQRGALLKTVRSVRSAELG 177

Query: 185 SI---EAQMAELGVKINIARVEMI---NALSSLIMEYVQKENFPHI---KLSLTGFLDGK 235
           ++   +  +A+ G ++  AR++++      ++     V  E+ P +   + SL     G 
Sbjct: 178 TLDVWDGHLAKHGAELLAARLDLVAAIAPHAAAAYAEVAPESRPALLSYRSSLGEAFPGT 237

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            D+    L++    +L   R  +      L+GPHR DL +   +      + S GE    
Sbjct: 238 HDREV--LEDALLAELHRLRPQEIDRGVCLVGPHRDDLELSLGELPAK-GYASHGESWSF 294

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            + + L    L+    G  P+L+LD++ A LD  +R  L ++      Q+F+T  
Sbjct: 295 ALALRLGAYELLRE-EGAEPVLVLDDVFAELDRGRRRQLAKVAA-AAEQVFITAA 347


>gi|163802135|ref|ZP_02196030.1| recombination protein F [Vibrio sp. AND4]
 gi|159173940|gb|EDP58750.1| recombination protein F [Vibrio sp. AND4]
          Length = 359

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 161/365 (44%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT+ILEA+  L  GR F+ +    V +   
Sbjct: 6   LIIQQFRNIKACDIDLSAGFNFLIGPNGSGKTSILEAVYLLGHGRSFKSSLTGRVIQNEC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +     RR F+D  VF  +P        F+RL + RN LL     Y + S+   
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTARSYRELSYW-- 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + +MA L   I+  R   I  + + + E + +   P  ++ L  +     D  +     
Sbjct: 179 -DQEMARLAENISQWRALYIEQMKT-VAETICQTFLPEFEIQLKYYRGWDKDTPY----H 232

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  +K F+    D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 233 EILEKNFE---RDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  TD  + D L++T K 
Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDNQIADMLDDTGKL 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|59710618|ref|YP_203394.1| recombination protein F [Vibrio fischeri ES114]
 gi|75507126|sp|Q5E8Z0|RECF_VIBF1 RecName: Full=DNA replication and repair protein recF
 gi|59478719|gb|AAW84506.1| gap repair protein [Vibrio fischeri ES114]
          Length = 359

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 164/365 (44%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I++FRN  +  +   +     +G NG GKT++LEAI  L  GR F+ +    + R   
Sbjct: 6   LIINDFRNITTCDIQLSSGFNFVIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIRNDC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   E  E    + I +  + D +   ++I     + + +L K L +  + P
Sbjct: 66  DELFIHGRFTTPEQFE----LPIGINKQRDGTTE-VKIGGESGQKLAQLAKVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +     RR F+D  VF ++P         +RL + RN LL     Y + S+   
Sbjct: 121 EGFELVTDGPKFRRAFIDWGVFHVEPAFYDAWSRVKRLTKQRNALLKTANSYRELSYW-- 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++A+L  KI+  RV+ IN +S    +  Q    P   + L+ +     +  +     
Sbjct: 179 -DLELAQLSEKIDQWRVDYINHISEATQQICQA-FLPEYDIKLSYYRGWDRETPYA---- 232

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  KK F+    D     T+ GP+++DL +      +     S G+ K+++  + LA  +
Sbjct: 233 ELLKKNFE---RDKQLGYTVGGPNKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L + +    +Q+F++  T + + D  ++ +K 
Sbjct: 289 HLTEATGKQCIYLIDDFASELDSHRRQLLAQYLKQTKAQVFISSITAEQIADMHDDESKM 348

Query: 365 MRISN 369
             I +
Sbjct: 349 FEIEH 353


>gi|295101861|emb|CBK99406.1| recF protein [Faecalibacterium prausnitzii L2-6]
          Length = 373

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 161/368 (43%), Gaps = 30/368 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RN AS  L    + T+  G+NG GKTN+LEAI  L+ G+ FR    A++
Sbjct: 1   MRLLSLEVENYRNIASASLTPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60

Query: 65  TRIGSP------SFFSTFARVEGMEGLADISIKLETRDD-RSVRCLQINDVVIRVVDELN 117
            R G P      S        +  E    I + +   D  R  R + +N   ++    L 
Sbjct: 61  VRRGEPFAVLKASTLRAQQEEQETEEPNRIRLTVGAPDSPRPGRTVSVNGGAVKRAASLA 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP-------RHRRRMIDFERLMRGRN 170
                    P    +  G    RR+FLD  +  + P       R+ R +     L+R  +
Sbjct: 121 GSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLTLYRRYVRALQQKNALLRRSS 180

Query: 171 RLLTEGYFDS-SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
             +   Y +  +    +  ++A+ G  I   R   + ALS L     ++ +     LSL 
Sbjct: 181 NGIERPYAEKRALLEVLNLELAQQGEAIQQRRRAYLAALSPLACANYEELSRGAETLSLR 240

Query: 230 GFLDGKFDQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
                +F+    A  L+++  ++L  G        ++L GPHR DL +   D      + 
Sbjct: 241 --YAAQFEPGGLARLLQQKMPEELRAG--------QSLCGPHREDLDL-LLDGQPAKVYA 289

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+Q+ V++ + +A A   ++ TG  P++LLD++ + LD+ ++  L   + +   Q F+
Sbjct: 290 SQGQQRSVVLSLKMAEAAAAASITGEHPVMLLDDVLSELDDGRKQYLLTRMRE--KQTFV 347

Query: 348 TGTDKSVF 355
           T  D + F
Sbjct: 348 TSCDDTAF 355


>gi|189499003|ref|YP_001958473.1| DNA replication and repair protein RecF [Chlorobium
           phaeobacteroides BS1]
 gi|226737774|sp|B3EJI1|RECF_CHLPB RecName: Full=DNA replication and repair protein recF
 gi|189494444|gb|ACE02992.1| DNA replication and repair protein RecF [Chlorobium
           phaeobacteroides BS1]
          Length = 363

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 160/362 (44%), Gaps = 28/362 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + +  FR +  L        T+  G NG GKTNILEA+ + +  RG  R+   + 
Sbjct: 1   MRLQEIQLVNFRKHKELVFAPSEAITVVYGPNGSGKTNILEAVHYCTLARGLNRSLDREC 60

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
               +  F    TFA   G+E    +S+K+    +   +   IN       DEL K+ ++
Sbjct: 61  LNFDAGYFLLQGTFADDRGIE----LSVKVSYEKNVEKKIF-INS------DELKKYSQL 109

Query: 123 SWLVPSMD------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--- 173
              +P +        + +G   ERRRF+D  +   +  +   ++ + R+++ RN LL   
Sbjct: 110 IGRIPCVTFSPMELSLVNGSPQERRRFMDNALSQTNKSYLDDLLQYRRVLQQRNTLLGAV 169

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            E   D         ++ +L   I   R+  I  L   I    ++     +         
Sbjct: 170 NEKGMDRDSLEVWTEKLTQLACSIVSERLAFIERLFVYIEPVYEQLGLGEVPGISYRSAA 229

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMS---RRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           G+      A +E ++  +   R+++      +++L GPHR DL+  + D  +   + S G
Sbjct: 230 GRHANEI-APEELFSFMMQRFREIEHQEIFRKQSLAGPHRDDLVFRFNDTDVK-KYASQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + +  L+ + LA   L+S+TTG  P+ LLD++ + LD  +   +   +   G  I +T T
Sbjct: 288 QLRTFLIAVKLALHTLVSDTTGERPLFLLDDLFSELDGTRIEKILEQLEGAGQSI-ITAT 346

Query: 351 DK 352
           D+
Sbjct: 347 DR 348


>gi|321313671|ref|YP_004205958.1| recombination protein F [Bacillus subtilis BSn5]
 gi|320019945|gb|ADV94931.1| recombination protein F [Bacillus subtilis BSn5]
          Length = 370

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 164/374 (43%), Gaps = 22/374 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L ++ +RNY    L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++ R
Sbjct: 3   IQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   +A++EG     + +I ++    +  +  ++N +  + + +    L      
Sbjct: 63  -----WDKDYAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RRRFLD  +  + P +   +  +++++  RN  L    T    D + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDRTM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK------ENFPHIKLSLTGFLDGKF 236
              +  Q+ E+  K+ + R++    L     ++ Q            + L     LD   
Sbjct: 178 LDVLTDQLVEVAAKVVVKRLQFTAQLE----KWAQPIHAGISRGLEELTLKYHTALDVSD 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 + + Y +     R+ +     TL GPHR D++  Y +      +GS G+Q+   
Sbjct: 234 PLELSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLF-YVNGRDVQTYGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVF 355
           + + LA   LI    G  PILLLD++ + LD+ +++ L   +   + + +  T  D    
Sbjct: 293 LSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDH 352

Query: 356 DSLNETAKFMRISN 369
           ++L +   F R+ N
Sbjct: 353 ETLRQAGMF-RVQN 365


>gi|121727885|ref|ZP_01680944.1| recF protein [Vibrio cholerae V52]
 gi|121629829|gb|EAX62244.1| recF protein [Vibrio cholerae V52]
          Length = 363

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 169/366 (46%), Gaps = 20/366 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +   
Sbjct: 6   LMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65

Query: 70  PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              F    R+      +D   + + +  + D S   ++I     + + +L + L +  + 
Sbjct: 66  SELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCS 184
           P    + +    +RR F+D  VF  +P        F+RL + RN LL   + Y + S+  
Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW- 182

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I+  R   +N L + + E + +   P   + L  +   + DQ + ++ 
Sbjct: 183 --DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSIL 239

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  ++       D     +  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 240 EKNFER-------DQQLGYSFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQG 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++K
Sbjct: 292 QHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSK 351

Query: 364 FMRISN 369
              +++
Sbjct: 352 TFHVAH 357


>gi|284040343|ref|YP_003390273.1| DNA replication and repair protein RecF [Spirosoma linguale DSM 74]
 gi|283819636|gb|ADB41474.1| DNA replication and repair protein RecF [Spirosoma linguale DSM 74]
          Length = 368

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 164/370 (44%), Gaps = 63/370 (17%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+++ F+NY  +R  F  Q  + VG NG GKTN+L+A+ FLS  +               
Sbjct: 6   LSLTNFKNYEDVRYTFSRQVNVLVGPNGSGKTNLLDAVYFLSLSK--------------- 50

Query: 70  PSFFSTFARVEGMEGLAD-----ISIKLETRDDRSVR---CLQINDVVIRVVDE-----L 116
               S F   + M  L D     I    E  DDR+V+    LQ     + + D+     +
Sbjct: 51  ----SAFQSQDAMSILHDTDYFIIDGIFEEHDDRTVQITISLQRGQRKVLMADKKPYERI 106

Query: 117 NKHL---RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           ++H+    +  + P+   +    S +RR F D ++  +DP + R  + ++++++ RN LL
Sbjct: 107 SEHIGRFPVVLVAPNDTDLVREHSEDRRHFFDGVLSQLDPEYLRNYLMYQQILKQRNSLL 166

Query: 174 T----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
                    D+    + +  + ELG KI+  R + I+            E  P  + S  
Sbjct: 167 KLFAERNQVDNDLLDTYDEPLLELGQKIHDRRRQFID------------EFLPGFR-SHY 213

Query: 230 GFLDGKFDQSFCALKEE-----YAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAI 282
            +L    ++     + E     +A +    R+ D++ +RT +G H+ D   I++  +   
Sbjct: 214 AYLSDDREEVTIQYESEVSNPGFADEFRHFRRRDTVLQRTTMGIHKDDYSFIIESGNGQP 273

Query: 283 TIA---HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
            +     GS G+QK  ++ + LA    +       PILLLD+I   LD+ +   L + + 
Sbjct: 274 PVPLKKFGSQGQQKTFVIALKLAQFAQLQAEKDVKPILLLDDIFDKLDDRRIGKLIQQMD 333

Query: 340 D-IGSQIFMT 348
           + +  Q+F+T
Sbjct: 334 EGVFGQLFIT 343


>gi|145597327|ref|YP_001161402.1| recombination protein F [Yersinia pestis Pestoides F]
 gi|145209023|gb|ABP38430.1| DNA replication and repair protein RecF [Yersinia pestis Pestoides
           F]
          Length = 425

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 159/371 (42%), Gaps = 20/371 (5%)

Query: 5   IKIKFLN-----ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           I+I F+      I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR  
Sbjct: 62  IRISFMALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSL 121

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
               V R     F     RV+  E  A + +    + D  VR   I+      V EL + 
Sbjct: 122 QAGRVIRHECAEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQM 177

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           L +  + P    + +G    RR FLD   F  +P       + +RL++ RN  L +    
Sbjct: 178 LPMQLITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSR 236

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +   + + ++  L  +I+  R    +A+++ I         P   LS + F  G   +S
Sbjct: 237 YTQIRAWDQEIIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES 294

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                 +Y + L    + D     T +GPH++D  +   D        S G+ K+++  +
Sbjct: 295 ------DYGELLARQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCAL 347

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSL 358
            LA    ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D +
Sbjct: 348 RLAQGEFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMV 407

Query: 359 NETAKFMRISN 369
            E  K  R+ +
Sbjct: 408 GEKGKMFRVEH 418


>gi|308047725|ref|YP_003911291.1| DNA replication and repair protein RecF [Ferrimonas balearica DSM
           9799]
 gi|307629915|gb|ADN74217.1| DNA replication and repair protein RecF [Ferrimonas balearica DSM
           9799]
          Length = 355

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 155/351 (44%), Gaps = 24/351 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L+I   RN  +  L       +  GDNG GKT++LEAI FLS GR FR        R
Sbjct: 3   IDRLHIQNLRNIQAATLEPAGGLNLIYGDNGSGKTSVLEAIWFLSVGRSFRTHLAPRAIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              P+    FAR    E L    ++     D  VR   IN      + +L   L +  + 
Sbjct: 63  HDEPNLV-LFARTTAGEKLG---LRRGRDGDNEVR---INGERPERLADLAACLPLQLIS 115

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    +       RR F+D   F  DP+       + RL++ RN+LL +   D  + +  
Sbjct: 116 PESFALLLEGPQARREFIDWGAFHSDPQFIGIWSRYRRLLKQRNQLLRQQAPDHQF-AIW 174

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALK 244
           + Q++E G  +   R   +++L+  +   + +   + P I++S +   D K       L 
Sbjct: 175 DKQLSEYGEALTAIRKRWVSSLNDTLTGIINQFLPDLP-IRVSFSQGWDSK-----SPLS 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +   +L    + D     T+ GPH++DL +   +  + +  G S G+ K+++  + +A 
Sbjct: 229 AQIQGQL----ERDKQLGYTVSGPHKADLRLRVGN--LPVQDGLSRGQLKLLVCALKIAQ 282

Query: 304 ARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            +++    T    I L+D++++ LDE  R  L   +   G Q+F+T  +  
Sbjct: 283 GKILGQKDTSRGCIYLVDDLASELDESHRTLLLEQLISTGEQVFVTAIEPG 333


>gi|108810131|ref|YP_654047.1| recombination protein F [Yersinia pestis Antiqua]
 gi|108814113|ref|YP_649880.1| recombination protein F [Yersinia pestis Nepal516]
 gi|167401621|ref|ZP_02307115.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|51591507|emb|CAH23179.1| DNA metabolism protein [Yersinia pseudotuberculosis IP 32953]
 gi|108777761|gb|ABG20280.1| DNA replication and repair protein RecF [Yersinia pestis Nepal516]
 gi|108782044|gb|ABG16102.1| DNA replication and repair protein RecF [Yersinia pestis Antiqua]
 gi|167049003|gb|EDR60411.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Antiqua str. UG05-0454]
          Length = 427

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 159/371 (42%), Gaps = 20/371 (5%)

Query: 5   IKIKFLN-----ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           I+I F+      I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR  
Sbjct: 62  IRISFMALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSL 121

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
               V R     F     RV+  E  A + +    + D  VR   I+      V EL + 
Sbjct: 122 QAGRVIRHECAEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQM 177

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           L +  + P    + +G    RR FLD   F  +P       + +RL++ RN  L +    
Sbjct: 178 LPMQLITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSR 236

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +   + + ++  L  +I+  R    +A+++ I         P   LS + F  G   +S
Sbjct: 237 YTQIRAWDQEIIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES 294

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                 +Y + L    + D     T +GPH++D  +   D        S G+ K+++  +
Sbjct: 295 ------DYGELLARQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCAL 347

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSL 358
            LA    ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D +
Sbjct: 348 RLAQGEFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMV 407

Query: 359 NETAKFMRISN 369
            E  K  R+ +
Sbjct: 408 GEKGKMFRVEH 418


>gi|197334005|ref|YP_002154783.1| DNA replication and repair protein RecF [Vibrio fischeri MJ11]
 gi|226737848|sp|B5FEV5|RECF_VIBFM RecName: Full=DNA replication and repair protein recF
 gi|197315495|gb|ACH64942.1| DNA replication and repair protein RecF [Vibrio fischeri MJ11]
          Length = 359

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 164/363 (45%), Gaps = 18/363 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I++FRN  +  +         +G NG GKT++LEAI  L  GR F+ +    + R   
Sbjct: 6   LIINDFRNITTCDIQLSPGFNFVIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIRNDC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              F    R    E L ++ I +  + D +   ++I     + + +L K L +  + P  
Sbjct: 66  DELF-IHGRFTTPE-LFELPIGINKQRDGTTE-VKIGGESGQKLAQLAKVLPLQLIHPEG 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187
             + +     RR F+D  VF ++P         +RL + RN LL     Y + S+    +
Sbjct: 123 FELVTDGPKFRRAFIDWGVFHVEPAFYDAWSRVKRLTKQRNALLKTANSYRELSYW---D 179

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            ++A+L  KI+  RV+ IN +S    +  Q    P   + L+ +     +  +     E 
Sbjct: 180 LELAQLSEKIDQWRVDYINHISEATQQICQA-FLPEYDIKLSYYRGWDRETPYA----EL 234

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
            KK F+    D     T+ GP+++DL +      +     S G+ K+++  + LA  + +
Sbjct: 235 LKKNFE---RDKQLGYTVGGPNKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQGQHL 290

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366
           +  TG   I L+D+ ++ LD  +R  L + +    +Q+F++  T + + D  ++ +K   
Sbjct: 291 TEATGKQCIYLIDDFASELDSHRRQLLAQYLKQTKAQVFISSITAEQIADMHDDESKMFE 350

Query: 367 ISN 369
           I +
Sbjct: 351 IEH 353


>gi|239916574|ref|YP_002956132.1| DNA replication and repair protein RecF [Micrococcus luteus NCTC
           2665]
 gi|281414962|ref|ZP_06246704.1| DNA replication and repair protein RecF [Micrococcus luteus NCTC
           2665]
 gi|259563665|sp|C5C7X6|RECF_MICLC RecName: Full=DNA replication and repair protein recF
 gi|239837781|gb|ACS29578.1| DNA replication and repair protein RecF [Micrococcus luteus NCTC
           2665]
          Length = 404

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 149/351 (42%), Gaps = 48/351 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +++FR+Y    L      T+ +G NGVGKTN++EAI +L   +  R +S A + R
Sbjct: 3   LSHLTVADFRSYRWADLELTPGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQLVR 62

Query: 67  IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G        AR+ G    G   +++K+E    RS R        +R  + L   LR   
Sbjct: 63  FG-----RDRARIAGRVHRGSRTVALKVEILPGRSNRVAINRGASVRAKEGLGI-LRTVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + +G    RRR LD+++  + P       D+ER++R RN LL  G     W  
Sbjct: 117 FAPEDLSLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKSGRGSRRWGP 176

Query: 185 SIEAQMA-------ELGVKINIARVEMINALSSLIME-------------YVQKENFP-- 222
             +A +A         G ++   R+ ++  L+  + E             Y  +   P  
Sbjct: 177 EEDATLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLA 236

Query: 223 ---HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
              H ++     L     ++  A +EE   +             TL+GPHR +L + +  
Sbjct: 237 RGTHAEVPAVADLATDMRRTLEAQREEERARAL-----------TLVGPHRDELAL-FLG 284

Query: 280 KAITIAHGSTGEQKVVLVGIFL-AHARLISN--TTGFAPILLLDEISAHLD 327
            A    + S GE   + + + + A+  L+++       P+L+LD++ A LD
Sbjct: 285 PAPARGYASHGETWSLALALRMAAYDVLVADDPDPDARPVLILDDVFAELD 335


>gi|282881774|ref|ZP_06290432.1| DNA replication and repair protein RecF [Peptoniphilus lacrimalis
           315-B]
 gi|281298384|gb|EFA90822.1| DNA replication and repair protein RecF [Peptoniphilus lacrimalis
           315-B]
          Length = 358

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 159/356 (44%), Gaps = 11/356 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + + F+ +  FRNY SL+L       I  G N  GKTN+LEAI        F+     D+
Sbjct: 1   MNLSFIGLYNFRNYKSLKLNTGPNINIIYGKNASGKTNLLEAIYMTCKAYSFKNPRDNDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S +        E      +  I++ TR++  ++   IN+      D   +   I  
Sbjct: 61  INF-SKNEACILGTYENNCYKDNYRIEI-TRNN--IKKYFINEQKTNSKD-FRQARHIVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    I      +RRRF+D  +  ID  +   +  + +++  RN+LL     + S   
Sbjct: 116 FSPVDLNIIKNSPSDRRRFIDESLSNIDLSYDYYLSQYRKILMERNKLLKISK-NMSLLE 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +++++G KI I R+  I  L+    ++ Q  +  + +L  T         +   ++
Sbjct: 175 IYDRELSKIGSKIIIMRLIAIKELNKYANKHYQNLS-KNDRLKTTYLSTIPLSSNEEEIR 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +   L   +  D   + T IGPHR D+     DK+ T A GS GEQ+ V++ + L+  
Sbjct: 234 ENFYNFLKLNQYKDFQRKNTSIGPHRDDIDFKINDKS-TKAFGSQGEQRSVVLSLKLSEF 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359
            LI        ILLLD++ + LDE +   L   + D  +Q F+T T+ K  F +LN
Sbjct: 293 DLIYKKFNDKSILLLDDVFSELDEKRTLYLLDSIKD--TQTFITTTEFKDYFKNLN 346


>gi|269103822|ref|ZP_06156519.1| DNA recombination and repair protein RecF [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163720|gb|EEZ42216.1| DNA recombination and repair protein RecF [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 360

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 160/369 (43%), Gaps = 29/369 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN A   L         +G NG GKT++LEA+ +L  GR FR      V R   
Sbjct: 6   LIVKDFRNIADCDLELSPSFNFLIGANGSGKTSVLEAVHYLGHGRSFRSHLTGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              F    RV+G        + +  + D +   ++I     + + +L + L +  + P  
Sbjct: 66  SELF-VHGRVQGEGTQLPQPVGINKKRDGTTE-VKIAGEGNQKLAQLAQILPLQLITPEG 123

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSSIE 187
             +  G    RR F+D  VF ++P+  +     +RL + RN LL     Y + S+     
Sbjct: 124 FDLLIGGPKFRRAFIDWGVFYVEPKFFQAWSRLKRLTKQRNALLKTATSYRELSYWDQEL 183

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKEN------FPHIKLSLTGFLDGKFDQSFC 241
           AQ+AE   +I++ R + + A+        QK N       P   + L G+  G   ++  
Sbjct: 184 AQLAE---QIDLWRSDYLAAVK-------QKANEICLGFLPEFDIQL-GYYRGWEKET-- 230

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
                Y + L    + D     T  GPH++DL +      +     S G+ K+++  + L
Sbjct: 231 ----PYGELLRRNFERDCQLGYTASGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRL 285

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNE 360
           A    ++  TG   I L+D+ ++ LD  +R  L + + +  +Q+F++  +   + D  +E
Sbjct: 286 AQGLHLTEVTGKQCIYLIDDFASELDSHRRALLAQRLKETHAQVFISAISADQITDMQDE 345

Query: 361 TAKFMRISN 369
             K   + +
Sbjct: 346 KGKMFLVEH 354


>gi|270264121|ref|ZP_06192388.1| DNA replication and repair protein RecF [Serratia odorifera 4Rx13]
 gi|270041770|gb|EFA14867.1| DNA replication and repair protein RecF [Serratia odorifera 4Rx13]
          Length = 361

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 155/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEA+  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEAADLALAPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P F     R+EG E    + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  PEFI-LHGRIEGAEREISVGLSKSRQGDSKVR---IDGSDGHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +   + + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I      +  P   LS + F  G   +S      +Y +
Sbjct: 181 LIPLAERISEWRAAYSDAIAADITATC-AQFLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D +   T +GPH++D  +      +     S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFERDRVLTYTAVGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + L+D+ ++ LD  +R  L   +    +Q+F++  + + V D   E  K  R+ 
Sbjct: 292 QSGRRCLYLIDDFASELDTGRRRLLADRLKATQAQVFVSAVSAEQVTDMAGEKGKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|257124818|ref|YP_003162932.1| DNA replication and repair protein RecF [Leptotrichia buccalis
           C-1013-b]
 gi|257048757|gb|ACV37941.1| DNA replication and repair protein RecF [Leptotrichia buccalis
           C-1013-b]
          Length = 362

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 156/350 (44%), Gaps = 20/350 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR--I 67
           ++ + FR     +L FD    +  G NG GKT+++EA+ FL+ G+ FR     ++ +  +
Sbjct: 6   ISFNNFRCLVDGKLKFDRYFNLIYGKNGQGKTSLIEAVHFLATGKSFRTKKVKEIRKYNL 65

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRD---DRSVRCLQINDVVIRVVDELNKHLRISW 124
                F  +   +  E +  I +  + +D   DR  +   IN V +         L I  
Sbjct: 66  NRLIVFGKYRHKDLSENIIAIDVNEDKKDFYIDRE-KNKYINYVGL---------LNIIS 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    +  G    RR F +  +      + + +++FE++++ RN+L+ E         
Sbjct: 116 FIPEDIELIIGNPGIRRNFFNYEISQAKKEYLQSIVNFEKILKVRNKLIKEKKTGEEIYK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFDQSFC 241
               +  E G+ I + R E I  LS L+    +K   EN   +KL    FL     ++  
Sbjct: 176 IYNEKFIEEGLNIVLNRREFIKKLSILLNLNYRKLFDEN-SELKLKYDCFLGDVEKKTRE 234

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            LKE++        + +     +L+GP + D + +   K    A+ S GE+K ++  + +
Sbjct: 235 ELKEKFEILCRRKSEREKFLGYSLLGPQKDDFVFELNGKNAK-AYSSQGEKKSIIFSLKI 293

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           +   ++       PI ++D+I+++ DE ++ ++     +   Q F+T T+
Sbjct: 294 SEIDILIKEKKEYPIFIMDDIASYFDEVRKKSILSYFVNKKIQCFITSTE 343


>gi|332291116|ref|YP_004429725.1| DNA replication and repair protein RecF [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169202|gb|AEE18457.1| DNA replication and repair protein RecF [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 363

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 159/360 (44%), Gaps = 40/360 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N+ S    FDA+   FVG+NGVGKTNIL+AI  LS G+     SY +   
Sbjct: 3   LKSLSLINYKNFESKDFTFDAKINCFVGNNGVGKTNILDAIYHLSFGK-----SYFNPVT 57

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHLR 121
             + +  + F  V G+        + + RD++ V   +     +     ++ +    H+ 
Sbjct: 58  SQNINHDADFFVVNGV-------YEKDGRDEKVVVSAKKGSKKVIKRNAKIYERFADHIG 110

Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----T 174
              LV   P+   + +  S  RR+F+D ++   D  +   ++ + +++  RN LL     
Sbjct: 111 FLPLVIISPADRDLITEGSDTRRKFIDGVISQSDKSYLSNLLGYSKILAQRNALLKYFAA 170

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFL 232
              F++   +    Q+   G  I   R + +   + +  E  +       H+ L+ +  L
Sbjct: 171 NSTFNADTLAVYNEQLEGFGTPIFEKRKQFLERFAPIFNERYKAISGGTEHVTLTYSSTL 230

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                 S   LK      L   R +    + T +G H+ DL  +     +    GS G+Q
Sbjct: 231 ------SDMPLKHSLTNALAKDRSL----QYTSVGIHKDDLQFEINGHPVK-KFGSQGQQ 279

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGT 350
           K  L+ + LA    I   +G  P+LLLD+I   LDE +   +  +V   D G Q+F++ T
Sbjct: 280 KSYLIALKLAQFDFIKQESGTTPLLLLDDIFDKLDESRVQHIIELVNTNDFG-QLFISDT 338


>gi|213424953|ref|ZP_03357703.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 357

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 160/362 (44%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      + EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  RVE  +A++  + +  Q +  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRVEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 TV 350


>gi|58336358|ref|YP_192943.1| recombination protein F [Lactobacillus acidophilus NCFM]
 gi|227902591|ref|ZP_04020396.1| recombination protein F [Lactobacillus acidophilus ATCC 4796]
 gi|75507682|sp|Q5FN12|RECF_LACAC RecName: Full=DNA replication and repair protein recF
 gi|58253675|gb|AAV41912.1| DNA repair and genetic recombination protein [Lactobacillus
           acidophilus NCFM]
 gi|227869680|gb|EEJ77101.1| recombination protein F [Lactobacillus acidophilus ATCC 4796]
          Length = 375

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 157/355 (44%), Gaps = 26/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRN   L + FD    IF+G N  GKTN+LEAI FL+  R  R +S  D+  IG 
Sbjct: 6   LTVQNFRNLKKLDVDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTSSDRDL--IG- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F   +  + G    + +++ L     +  + + IN +    + +    L      P  
Sbjct: 63  --FDGEYTNLAGHVQKSQVTLNLRVLITKKGKKVWINRIEQAKLSKYVGQLNAILFSPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSS 185
             +  G    RRRF+D+    I+  +      + +++  +N  L +       D  +   
Sbjct: 121 LELIKGAPSLRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQVFLDV 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-----KLSLTGFLDGKFDQSF 240
           +  Q+A +  ++   R + +  LS     +   + + HI     KLS+  +     D + 
Sbjct: 181 LSDQLAGIAAELIYRRFKFLTYLS-----HYASDAYTHISLGSEKLSI-AYHPSVSDITA 234

Query: 241 CALKEEYAKKLFD--GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
               EE  +K+ +   R   S  R+  T  GPHR D+      K   + + S G+Q+ + 
Sbjct: 235 DDTTEEIYQKILNSFNRNKASEIRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIA 293

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           + I LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD
Sbjct: 294 LSIKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHG-KTQTFITTTD 347


>gi|262281564|ref|ZP_06059343.1| DNA replication and repair protein recF [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257023|gb|EEY75762.1| DNA replication and repair protein recF [Acinetobacter
           calcoaceticus RUH2202]
          Length = 360

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 156/350 (44%), Gaps = 29/350 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66
           LNI   RN  ++ L       IF G NG GKT+ILEAI  L+ GR FR     +Y     
Sbjct: 6   LNIERVRNLKTVALQGLQPFNIFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYAA 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F  +     GM+ LA              + +++N   +    +L K L +  L 
Sbjct: 66  EDAIVFAQSSTEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHLD 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P    I    +  RR+ LD ++F ++P        + R ++ RN LL T      +    
Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
               +++ G  ++  R+ ++   +      + ++  P +++ L      ++   F   ++
Sbjct: 175 WNKMLSDYGEILHSQRLGIVEQWNVFFQNDL-RQLLPDLEIEL------EYSPGFHT-EQ 226

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              + L +  + D   R T  GPHR+D  L   Y    + +   S G++K++++ + L+ 
Sbjct: 227 GLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPYGHADVVL---SRGQKKLLIIALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
             ++ + +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D +
Sbjct: 284 IAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332


>gi|21961124|gb|AAM87653.1|AE014012_10 ssDNA and dsDNA binding protein [Yersinia pestis KIM 10]
 gi|45438596|gb|AAS64142.1| DNA metabolism protein [Yersinia pestis biovar Microtus str. 91001]
          Length = 440

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 159/371 (42%), Gaps = 20/371 (5%)

Query: 5   IKIKFLN-----ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           I+I F+      I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR  
Sbjct: 75  IRISFMALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSL 134

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
               V R     F     RV+  E  A + +    + D  VR   I+      V EL + 
Sbjct: 135 QAGRVIRHECAEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQM 190

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           L +  + P    + +G    RR FLD   F  +P       + +RL++ RN  L +    
Sbjct: 191 LPMQLITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSR 249

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +   + + ++  L  +I+  R    +A+++ I         P   LS + F  G   +S
Sbjct: 250 YTQIRAWDQEIIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES 307

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                 +Y + L    + D     T +GPH++D  +   D        S G+ K+++  +
Sbjct: 308 ------DYGELLARQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCAL 360

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSL 358
            LA    ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D +
Sbjct: 361 RLAQGEFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMV 420

Query: 359 NETAKFMRISN 369
            E  K  R+ +
Sbjct: 421 GEKGKMFRVEH 431


>gi|167751442|ref|ZP_02423569.1| hypothetical protein EUBSIR_02438 [Eubacterium siraeum DSM 15702]
 gi|167655688|gb|EDR99817.1| hypothetical protein EUBSIR_02438 [Eubacterium siraeum DSM 15702]
          Length = 377

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 162/372 (43%), Gaps = 43/372 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASYA 62
           ++IK L +  FRN       F     +  G+N  GKTN+ EAIS  + P  R  R++SY 
Sbjct: 1   MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAISLCMGPSFRTSRQSSYI 60

Query: 63  DVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
             +   S        +F+T    +  E L + +I    ++      ++ N + I+   EL
Sbjct: 61  PFSLDNSKEKCVIKMWFTTSFNTDS-ENLIEFTICNNKKE------IKYNGLAIKSALEL 113

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              L+    +P    +  G+   RR +LD +     P H +++  + + ++ +N LL   
Sbjct: 114 YGVLKYVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFGI 173

Query: 177 YFD----------SSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIK 225
            F            SW S + A+    G+ +   R++  + L ++  + Y +      +K
Sbjct: 174 NFGDDLSVIRPQIESWNSVLAAE----GLNVTYGRLKYFSLLETIASQLYNELSGGEELK 229

Query: 226 LSLTGFLDGKFD------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           L    +    FD      +    L  EY ++L    + +   R T++G HR D+ + Y D
Sbjct: 230 LK---YYSSIFDSTELKCEEINGLYNEYLERLNSSFQRELKMRYTVLGVHRDDMNL-YID 285

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
                  GS G+Q+   + + LA A +I       PI++LD++ + LD  ++  +   + 
Sbjct: 286 NNDVKEFGSQGQQRSTALALKLAEAEIIRQKDE-TPIMILDDVLSELDAGRQRFVLNHI- 343

Query: 340 DIGSQIFMTGTD 351
            I SQ+F+T  +
Sbjct: 344 -INSQVFITCCN 354


>gi|150260970|ref|ZP_01917698.1| DNA metabolism protein [Yersinia pestis CA88-4125]
 gi|161484720|ref|NP_671402.2| recombination protein F [Yersinia pestis KIM 10]
 gi|161511283|ref|NP_995265.2| recombination protein F [Yersinia pestis biovar Microtus str.
           91001]
 gi|161760551|ref|YP_072416.2| recombination protein F [Yersinia pseudotuberculosis IP 32953]
 gi|162421418|ref|YP_001608446.1| recombination protein F [Yersinia pestis Angola]
 gi|165926115|ref|ZP_02221947.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936903|ref|ZP_02225469.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009709|ref|ZP_02230607.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213283|ref|ZP_02239318.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167422826|ref|ZP_02314579.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425451|ref|ZP_02317204.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170022265|ref|YP_001718770.1| recombination protein F [Yersinia pseudotuberculosis YPIII]
 gi|218931072|ref|YP_002348947.1| recombination protein F [Yersinia pestis CO92]
 gi|229839802|ref|ZP_04459961.1| gap repair protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841887|ref|ZP_04462043.1| gap repair protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229896764|ref|ZP_04511927.1| gap repair protein [Yersinia pestis Pestoides A]
 gi|229904652|ref|ZP_04519763.1| gap repair protein [Yersinia pestis Nepal516]
 gi|270488363|ref|ZP_06205437.1| DNA replication and repair protein RecF [Yersinia pestis KIM D27]
 gi|294505623|ref|YP_003569685.1| recombination protein F [Yersinia pestis Z176003]
 gi|20978599|sp|Q8Z9U9|RECF_YERPE RecName: Full=DNA replication and repair protein recF
 gi|97181121|sp|Q663T4|RECF_YERPS RecName: Full=DNA replication and repair protein recF
 gi|226737852|sp|A9R5R3|RECF_YERPG RecName: Full=DNA replication and repair protein recF
 gi|226737853|sp|B1JGD5|RECF_YERPY RecName: Full=DNA replication and repair protein recF
 gi|115349683|emb|CAL22664.1| DNA metabolism protein [Yersinia pestis CO92]
 gi|149290378|gb|EDM40455.1| DNA metabolism protein [Yersinia pestis CA88-4125]
 gi|162354233|gb|ABX88181.1| DNA replication and repair protein recF [Yersinia pestis Angola]
 gi|165915145|gb|EDR33756.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921975|gb|EDR39152.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991631|gb|EDR43932.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205581|gb|EDR50061.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958218|gb|EDR55239.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167055465|gb|EDR65258.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169748799|gb|ACA66317.1| DNA replication and repair protein RecF [Yersinia
           pseudotuberculosis YPIII]
 gi|229678770|gb|EEO74875.1| gap repair protein [Yersinia pestis Nepal516]
 gi|229691226|gb|EEO83279.1| gap repair protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696168|gb|EEO86215.1| gap repair protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700202|gb|EEO88238.1| gap repair protein [Yersinia pestis Pestoides A]
 gi|262363787|gb|ACY60508.1| recombination protein F [Yersinia pestis D106004]
 gi|262367724|gb|ACY64281.1| recombination protein F [Yersinia pestis D182038]
 gi|270336867|gb|EFA47644.1| DNA replication and repair protein RecF [Yersinia pestis KIM D27]
 gi|294356082|gb|ADE66423.1| recombination protein F [Yersinia pestis Z176003]
 gi|320017425|gb|ADW00997.1| gap repair protein [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 361

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 155/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHEC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     RV+  E  A + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  AEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +   + + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I         P   LS + F  G   +S      +Y +
Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T +GPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLARQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+ 
Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351

Query: 369 N 369
           +
Sbjct: 352 H 352


>gi|282881520|ref|ZP_06290190.1| DNA replication and repair protein RecF [Prevotella timonensis CRIS
           5C-B1]
 gi|281304631|gb|EFA96721.1| DNA replication and repair protein RecF [Prevotella timonensis CRIS
           5C-B1]
          Length = 370

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 170/374 (45%), Gaps = 41/374 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N     L F ++    +G NG GKTN+L+AI +LS    F R+++  +  
Sbjct: 3   LKKISILNYKNIEVADLEFSSKLNCLIGHNGEGKTNLLDAIYYLS----FCRSAFNPIDS 58

Query: 67  ---IGSPSFFS---TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
              +    FFS   T+ R +G E L    +K  TR     +  + ND   + + E    +
Sbjct: 59  QLILHGRDFFSLQGTYLRDDGDEELIHCGLKRGTR-----KRFKRNDKDYKRLSEHIGLI 113

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFD 179
            + ++ PS   +  G S ERRRFLD ++  ++  +   +  + + +  RN LL  E   D
Sbjct: 114 PLIFVSPSDTILIEGGSEERRRFLDMVISQLNRTYIEHLSRYNKALAQRNALLKNEDAPD 173

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            S    +E +MA  G  I   R        S I E++    F  I  S++G  +   + S
Sbjct: 174 LSLLEILEQEMAVQGEAIFAIR-------QSFIEEFIPV--FQSIYDSISGHHE---EVS 221

Query: 240 FCALKEEYAKKLFDGRKMDSMSRR----TLIGPHRSDL---IVDYCDKAITIAHGSTGEQ 292
              +       L D  + D M  R    +L G HR DL   I DY  K      GS G+ 
Sbjct: 222 LQYISHAQRGPLLDVIQRDRMKDRAVGYSLHGVHRDDLQMMIGDYQMK----REGSQGQN 277

Query: 293 KVVLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGT 350
           K  ++ + LA    +  T +   P+LLLD+I   LD ++   +  +VT     QIFMT T
Sbjct: 278 KTYVLALKLAQFDFLQRTSSATQPLLLLDDIFDKLDAERVERIVDLVTSTTYGQIFMTDT 337

Query: 351 DKSVFDSLNETAKF 364
           +++  D +  +  F
Sbjct: 338 NRAHLDRILSSHSF 351


>gi|315654134|ref|ZP_07907050.1| recombination protein F [Lactobacillus iners ATCC 55195]
 gi|315488830|gb|EFU78476.1| recombination protein F [Lactobacillus iners ATCC 55195]
          Length = 373

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++ +   
Sbjct: 6   LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    A + G     +I   L+       +   IN +  + +      +      P  
Sbjct: 63  --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D     I+  +   +  + ++++ RN  L    ++   D  + + 
Sbjct: 121 LSLIKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242
           +  Q+A L  ++   RV  ++ L         KEN       ++     LD ++  SF  
Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQREILDIEYKASFPE 231

Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             E+      Y K L  F+  +++ M    TL+GPHR DL V + +K     + S G+Q+
Sbjct: 232 FDEKDSVEKIYKKILLSFEHVRVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            +++ I LA   L+       PILLLD++ + LD  ++  L   +    +Q F+T TD
Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQTFITTTD 347


>gi|88803287|ref|ZP_01118813.1| DNA replication and repair protein RecF, ABC family ATPase
           [Polaribacter irgensii 23-P]
 gi|88780853|gb|EAR12032.1| DNA replication and repair protein RecF, ABC family ATPase
           [Polaribacter irgensii 23-P]
          Length = 359

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 162/360 (45%), Gaps = 41/360 (11%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI  LN   F+N  +    F  +   FVG+NGVGKTNIL+AI +LS  +     SY +  
Sbjct: 5   KISLLN---FKNLEAQSFDFQQKINCFVGNNGVGKTNILDAIYYLSFAK-----SYFNSV 56

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKH- 119
            I +    ++F  VEG          ++ R+++ V  L+     +     +  ++ ++H 
Sbjct: 57  AIQNIRHGASFFMVEG-------DYVIDHRNEKIVCSLKKGQKKVLKRNGKSYEKFSEHI 109

Query: 120 --LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---- 173
             L +  + P+   + +  S  RR+F+D ++   +  +   ++ + +++  RN LL    
Sbjct: 110 GQLPLVIISPADRDLVTEGSDTRRKFIDGVISQQNKNYLLDLLAYNKVLTQRNALLKYFA 169

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGF 231
               FD+   S  +AQ++E G +I   R   +     +  E  Q    +   + L     
Sbjct: 170 ANRTFDALNLSVYDAQLSEYGTRIYEVRKAFLEKFIPIFNEKYQVISNDKERVDLVYKSQ 229

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           L+   D S  +L ++  +K       D + + T  G H+ DL  +  D  I    GS G+
Sbjct: 230 LN---DFSMNSLLQKSLEK-------DKILQYTTAGTHKDDLSFEIGDYPIK-KFGSQGQ 278

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGT 350
           QK  L+ +  A    I   +   PILLLD+I   LDE +   +  +V  D   QIF+T T
Sbjct: 279 QKSYLIALKFAQFEFIKQQSNVVPILLLDDIFDKLDESRVLQIINLVNNDEFGQIFITDT 338


>gi|146297979|ref|YP_001192570.1| DNA replication and repair protein RecF [Flavobacterium johnsoniae
           UW101]
 gi|189039624|sp|A5FNH5|RECF_FLAJO RecName: Full=DNA replication and repair protein recF
 gi|146152397|gb|ABQ03251.1| DNA replication and repair protein RecF [Flavobacterium johnsoniae
           UW101]
          Length = 359

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 153/350 (43%), Gaps = 26/350 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  ++N++     FD +   FVG NG+GKTN+L+AI  L+ G+ +         + G 
Sbjct: 6   LSLFNYKNFSEAGFDFDIKINCFVGKNGIGKTNVLDAIYHLAYGKSYFNPLAVQNIKHGE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV--- 126
             FF   A +E  +    I   L+       + L+ N    +  D+ + H+    LV   
Sbjct: 66  -EFFVIDAELEKNDRTEQIVCSLKKGQK---KVLKRNG---KAYDKFSDHIGFIPLVIIS 118

Query: 127 PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSS 181
           P+  D I  G S  RR+F+D ++  +D  +  ++I +++++  RN LL        FD+ 
Sbjct: 119 PADRDLIVEG-SETRRKFMDSVISQLDSTYLHQLIQYQKVIVQRNALLKYFALNHTFDND 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
             S    Q+ E G  I   R E +     +   + Q        + L  +    F++   
Sbjct: 178 TLSIYNEQLNEFGKSIFEKRKEFLEEFIPIFNVHHQAITGSEESVQLV-YESHLFEKDLL 236

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            L +E   K       D     T  G H+ DL  +  D       GS G+QK  L+ + L
Sbjct: 237 TLLQENINK-------DRALHYTSSGIHKDDLSFE-IDSHPIKKFGSQGQQKSFLIALKL 288

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGT 350
           A    +   +G  PILL D+I   LDE +   +  +V ++   Q+F++ T
Sbjct: 289 AQFEFLKKQSGVKPILLFDDIFDKLDETRVAKIVEMVNSETFGQLFISDT 338


>gi|163838773|ref|YP_001623178.1| recombination protein F [Renibacterium salmoninarum ATCC 33209]
 gi|189039634|sp|A9WR32|RECF_RENSM RecName: Full=DNA replication and repair protein recF
 gi|162952249|gb|ABY21764.1| DNA replication and repair protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 398

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 167/396 (42%), Gaps = 41/396 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++++FR+Y    L  +    +F+G NG+GKTN++EA+ +L+     R +    + R
Sbjct: 3   LEQLSLTDFRSYQQADLGLEPGVNVFIGSNGLGKTNLVEALGYLASLSSHRVSQDGPLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+         V G + L  + +++        R  + N V  R   E+    R     
Sbjct: 63  FGAEQALIRGNLVRGTQRLG-LEVEINASRANRARINRANPVRAR---EILGLCRTVLFA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS------ 180
           P    +  G    RRRFLD ++ ++ PR      D+ER+++ RN LL      S      
Sbjct: 119 PEDLSLVKGDPGNRRRFLDDLLQSLHPRFAGLRADYERVLKQRNALLKSARGHSRSRQAP 178

Query: 181 --SWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLT 229
              + S+IE      A    ++  AR++++  L   +    Q      KE     + SL 
Sbjct: 179 SADFLSTIEVWDQHFANHAAQLLSARLKVLEQLKPEMSRAYQELTDGSKELSARYRSSLD 238

Query: 230 GFLDGKFD--------------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
           G+ +   D               S  +L E Y   L   R+ +     TLIGPHR ++ +
Sbjct: 239 GYQEDSDDAAEIHDDEAASLVSASVESLTEHYLLALAAVRQREIERGLTLIGPHRDEVEL 298

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLDEDKRN 332
               +A    + S GE   V + + LA   ++       G  PIL+LD++ A LD  +R+
Sbjct: 299 G-LGQAPARGYASHGETWSVALALRLASYYVLKADQEIDGADPILVLDDVFAELDSSRRS 357

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
            L  +V      +     D  V   L  + + +R+S
Sbjct: 358 KLAHMVAGAEQVLVTAAVDDDVPAEL--SGRRIRVS 391


>gi|269962693|ref|ZP_06177038.1| recF protein [Vibrio harveyi 1DA3]
 gi|269832616|gb|EEZ86730.1| recF protein [Vibrio harveyi 1DA3]
          Length = 359

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 161/365 (44%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V +   
Sbjct: 6   LIIQQFRNIKACDIDLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNEC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +     RR F+D  VF  +P        F+RL + RN LL     Y + S+   
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTARSYRELSYW-- 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + +MA L   I+  R   I  + S + E + +   P  ++ L  +     D  +     
Sbjct: 179 -DQEMARLAENISQWRALYIEQMKS-VAETICQTFLPEFEIQLKYYRGWDKDTPY----H 232

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  +K F+    D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 233 EILEKNFE---RDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L++T K 
Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDTGKL 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|309804122|ref|ZP_07698203.1| DNA replication and repair protein RecF [Lactobacillus iners
           LactinV 11V1-d]
 gi|309809779|ref|ZP_07703633.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN
           2503V10-D]
 gi|308163890|gb|EFO66156.1| DNA replication and repair protein RecF [Lactobacillus iners
           LactinV 11V1-d]
 gi|308169958|gb|EFO71997.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN
           2503V10-D]
          Length = 373

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 32/358 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++ +   
Sbjct: 6   LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    A + G     +I   L+       +   IN +  + +      +      P  
Sbjct: 63  --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D     I+  +   +  + ++++ RN  L    ++   D  + + 
Sbjct: 121 LSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242
           +  Q+A L  ++   RV  ++ L         KEN       ++     LD ++  SF  
Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQREILDIEYKASFPE 231

Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             E+      Y K L  F+  +++ M    TL+GPHR DL V + +K     + S G+Q+
Sbjct: 232 FDEKDSVEKIYKKILLSFEHVRVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            +++ I LA   L+       PILLLD++ + LD  ++  L   +    +Q F+T TD
Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQTFITTTD 347


>gi|256823909|ref|YP_003147869.1| DNA replication and repair protein RecF [Kytococcus sedentarius DSM
           20547]
 gi|256687302|gb|ACV05104.1| DNA replication and repair protein RecF [Kytococcus sedentarius DSM
           20547]
          Length = 390

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 164/388 (42%), Gaps = 32/388 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L + +FR+Y    L   A  T+FVG NG GKTN++EA  +L+     R +S   +
Sbjct: 1   MRLRHLAVRDFRSYEQADLDLPAGVTVFVGRNGQGKTNLVEAAGYLATLGSHRVSSDQPL 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R+G+  +        +G E +    ++L+    R+ R       V R  D L   LR  
Sbjct: 61  VRVGAEHAIIRGAVDHDGRETV----LELQINPGRANRAQLGRSPVPRARDVLGT-LRTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175
              P    +  G    RR FLD ++ A  PR      D+ + ++ RN LL +        
Sbjct: 116 LFAPEDLALVKGDPAGRRAFLDALLVARQPRWAGVQADYAQALKQRNALLRDVRASRSAP 175

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT---GFL 232
                +   + +  +A  G  +  AR+ ++  L   + +  ++ +    +  LT     +
Sbjct: 176 SSSTVAMLEAWDEHLAVGGASLLYARLRLVQDLRRFVEKAYRQVSEAASEAGLTYRWSLV 235

Query: 233 DGKFDQSFCAL-------KEEYAKKLFDGRKMDSMSRR------TLIGPHRSDLIVDYCD 279
             + D +   L       + +   +LF    + +M +R      TL+GPHR DL +    
Sbjct: 236 GDEADAALSGLTGGGPVPERDDLARLFSA-SLGAMRQRELERGITLVGPHRDDLDL-TLG 293

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
                 + S GE   + + + LA   L+    G  P+L+LD++ A LD  +R  L  +V 
Sbjct: 294 PVPAKGYASHGESWSLALSLRLAAFELLRTDLGTDPVLVLDDVFAELDTGRRERLAELVA 353

Query: 340 DIGSQIFMTGTDKSVFDSLNETAKFMRI 367
           D    +     +  V  +L E A  + +
Sbjct: 354 DAEQVLVTAAVETDVPQTLRERAHHVDV 381


>gi|300866238|ref|ZP_07110950.1| DNA replication and repair protein recF [Oscillatoria sp. PCC 6506]
 gi|300335757|emb|CBN56110.1| DNA replication and repair protein recF [Oscillatoria sp. PCC 6506]
          Length = 395

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 184/397 (46%), Gaps = 69/397 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ +++ +FRNY   +++FDA  TI VG+N  GK+N+LEA+  LS  +  R     D+  
Sbjct: 3   LRSIHLRQFRNYRDQKVIFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRATRDRDLIL 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              P      A +E   G+ D+++ L  +  R+V    +N       + L +HL    ++
Sbjct: 63  DAKP-IGQIDASLERQTGIIDLTLTLRNQGRRTV---GLNG------EPLRRHLDFLSVL 112

Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----- 173
            ++   FS L ++        RR ++DR+V  ++P +   +  + +++R RN  L     
Sbjct: 113 NTVQ--FSSLDLDLVRGSPEHRRDWIDRLVTQLEPVYAHILQQYNQILRQRNAFLRREKE 170

Query: 174 --------TEGYFD--SSWCSSI--------EAQMAELGVKINIARVEMINALSSLIMEY 215
                   T  Y    +++ S I        +AQ+A  G ++   R  ++  L  L   +
Sbjct: 171 QANKGELPTTNYQSPITNYQSPITNSELALWDAQLATAGARVIRRRDRVLERLIPLAQSW 230

Query: 216 VQKENFPHIKLSLTG---FLDGKFDQSFCALKEEYAKKLFDGRK---MDSMSRR------ 263
            +         S++G    LD K+  +   ++E  A+   +G +   +D +  R      
Sbjct: 231 HR---------SISGSMEVLDVKYIPNVEVIQELIARDRLEGVRQAFLDKIRERAIAEYY 281

Query: 264 ---TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
              TL+GPHR D I    +      +GS G+Q+ +++ + LA  +LI    G  P+LLLD
Sbjct: 282 QGTTLVGPHRDD-ISFTINNTPARQYGSQGQQRTLVLALKLAELQLIEEVVGEPPLLLLD 340

Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           ++ A LD +++N L   + +   Q  +T T    FD+
Sbjct: 341 DVLAELDLNRQNQLLETIQE-RFQTLITTTHLGAFDA 376


>gi|146295088|ref|YP_001178859.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408664|gb|ABP65668.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 349

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 153/359 (42%), Gaps = 27/359 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + +  FRN+      F     + +G N  GKTN+LEAI F   G+ F+     D   
Sbjct: 3   IKSIYLENFRNHNERFFEFKDGINLILGKNASGKTNLLEAIYFCLCGKSFKS---KDTNL 59

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISWL 125
           I   SF S + ++E      D+   +    DR   + + IN+  I  + EL +  +  + 
Sbjct: 60  I---SFDSEYFKLEASVLANDVEYGILCYVDRLGQKRIMINEKKINRLSELIEKFKFVYF 116

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    +       RR+FLD  V  + P   +   D+++ +  RN  L + Y        
Sbjct: 117 EPDSTELIKQDPKVRRKFLDMEVAKLYPYMIKTFQDYQKALMSRNAFL-KSYDKKDIIDV 175

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCAL 243
            + ++++LG +I   R E I  LS    E   K  E+   I +     +         + 
Sbjct: 176 YDIELSKLGCQILKKREETIKRLSEATKEIWYKVFEDKSTIDIVFRPSIPS-------SS 228

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +EEY  +L    + D     T  G HR D  V + +      + S G+ K   + I LA 
Sbjct: 229 EEEYYSQLKKQFEKDVQMGFTTKGVHRDDFDV-FINGQNAKEYASEGQIKFACIAISLAS 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           A+L        P+LLLD+I + LD +KR  + ++  D   Q  +T  D+   DSL +T 
Sbjct: 288 AKLFEK-----PVLLLDDIFSELDSEKRKNVLKLCKDY--QAIITSADEK--DSLVKTG 337


>gi|296330040|ref|ZP_06872524.1| recombination protein F [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672702|ref|YP_003864373.1| recombination protein F [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296153079|gb|EFG93944.1| recombination protein F [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305410945|gb|ADM36063.1| recombination protein F [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 370

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/374 (21%), Positives = 165/374 (44%), Gaps = 22/374 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L ++ +RNY    L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++ R
Sbjct: 3   IQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   +A++EG     + +I ++    +  +  ++N +  + + +    L      
Sbjct: 63  -----WDKDYAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RRRFLD  +  + P +   +  +++++  RN  L    T    D + 
Sbjct: 118 PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDRTM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK------ENFPHIKLSLTGFLDGKF 236
              +  Q+ E+  K+ + R++    L     ++ Q            + L     L+   
Sbjct: 178 LDVLTDQLVEVAAKVVVKRLQFTAQLE----KWAQPIHAGISRGLEELTLKYHTALEVSD 233

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
            +    + + Y +     R+ +     TL GPHR D++  Y +      +GS G+Q+   
Sbjct: 234 PKDLSKIGDSYQEAFSKLREKEIERGITLSGPHRDDVLF-YVNGRDVQTYGSQGQQRTTA 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVF 355
           + + LA   LI    G  PILLLD++ + LD+ +++ L   +   + + +  T  D    
Sbjct: 293 LSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDH 352

Query: 356 DSLNETAKFMRISN 369
           ++L +   F R+ N
Sbjct: 353 ETLRQAGMF-RVQN 365


>gi|86133307|ref|ZP_01051889.1| DNA replication and repair protein RecF [Polaribacter sp. MED152]
 gi|85820170|gb|EAQ41317.1| DNA replication and repair protein RecF [Polaribacter sp. MED152]
          Length = 359

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 159/359 (44%), Gaps = 44/359 (12%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  F+N AS    F  +   FVG+NGVGKTN+L+AI +LS  +     SY +   + +
Sbjct: 6   LSLVNFKNIASQSFDFQEKINCFVGNNGVGKTNVLDAIYYLSFTK-----SYFNSVAVQN 60

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-----RVVDELNKHL---R 121
                +F  +EG   L D       R +  V  L+     I     +  D  + H+    
Sbjct: 61  IKHNESFFMIEGNYLLND-------RKETIVCSLKKGQKKILKRNGKTYDRFSDHIGQFP 113

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGY 177
           I  + P+   + +  S  RR+F+D ++   +  + + +I + +++  RN LL        
Sbjct: 114 IVIISPADRDLVTEGSDLRRKFIDGVISQQNKSYLKDLIGYNKVLTQRNALLKYFAANRT 173

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENFPHIKLSLTGFL 232
           FD+   S  + Q+++ G KI   R   +     +  E  +     KEN   + L+    L
Sbjct: 174 FDALNLSVYDEQLSDFGTKIYEVRRHFLEEFIPIFNEKYKVISGDKEN---VNLNYKSQL 230

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
               D S   L ++  +K       D + + +  G H+ DL  +  D  I    GS G+Q
Sbjct: 231 H---DFSMPDLLQKSLEK-------DKILQYSTSGIHKDDLNFEIGDYPIK-KFGSQGQQ 279

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGT 350
           K  L+ + LA    I       PILLLD+I   LDE++   +  +V  D   QIF+T T
Sbjct: 280 KSYLIALKLAQFEFIKQQAKITPILLLDDIFDKLDENRVAQIIDLVNNDEFRQIFITDT 338


>gi|309811297|ref|ZP_07705084.1| DNA replication and repair protein RecF [Dermacoccus sp. Ellin185]
 gi|308434604|gb|EFP58449.1| DNA replication and repair protein RecF [Dermacoccus sp. Ellin185]
          Length = 440

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 166/383 (43%), Gaps = 49/383 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L++ +FR+Y    +      T FVG NG GKTN++EA  +L+     R ++ A +
Sbjct: 1   MRLRHLSLRDFRSYTEAEVELADGVTTFVGLNGQGKTNLVEAAGYLATLGSHRVSTDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+   F   A V       +  ++LE    R+ R         R  D L   LR   
Sbjct: 61  VRFGAERAFVRAAVVRDSH---ETVLELEIIPGRANRARIGRAAAGRPRDILGS-LRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G   ERRRFLD ++ A  PR      D++++++ RN LL       S  S
Sbjct: 117 FAPEDLALVKGDPGERRRFLDDLLVARQPRWAGARSDYDKILKQRNALL------RSAQS 170

Query: 185 SIE--AQMAELGVKINIARVEMINAL-----------SSLIMEYVQ--KENFPHIKLSLT 229
           +++  A+ A L     ++R   ++ L           S+L+   ++  K+  P++  +  
Sbjct: 171 ALKKGARGARLSADQEVSRETALDTLVEWNTHLASVGSALVYARLRLLKDLAPYVAQAYD 230

Query: 230 GFLDGKFDQSFC---ALKEEYAKKLFDGR--KMDSMSRR-----------------TLIG 267
               G+ D       +L E  A ++  G   + D + +                  TL+G
Sbjct: 231 EVSAGRSDARLAYVSSLPESTAARIASGEVPERDELEKAFHEAFELQRTREIERGVTLVG 290

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           PHR D+ +   D      + S GE     + + LA   L+ +  G  P+L+LD++ A LD
Sbjct: 291 PHRDDVTLTLGDLPAK-GYASHGESWSFALALRLAAFHLLRHDLGTDPVLVLDDVFAELD 349

Query: 328 EDKRNALFRIVTDIGSQIFMTGT 350
             +R  L  +V+D   Q+ +T  
Sbjct: 350 AGRRERLADMVSD-AEQVLITAA 371


>gi|145628067|ref|ZP_01783868.1| recombination protein F [Haemophilus influenzae 22.1-21]
 gi|144979842|gb|EDJ89501.1| recombination protein F [Haemophilus influenzae 22.1-21]
          Length = 359

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 161/367 (43%), Gaps = 17/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLNFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I E   +   P ++++++      F Q +    
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALCPEI-EQTCRLFLPELEINVS------FHQGW-EKN 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +YA+ L    + D     T  GP ++D    +  + + +    S G+ K+++  + LA 
Sbjct: 228 TDYAEVLEQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362
              +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T   K     +  E  
Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITKRQLKEMQVENK 345

Query: 363 KFMRISN 369
           K   + N
Sbjct: 346 KMFSVHN 352


>gi|153947001|ref|YP_001403093.1| recombination protein F [Yersinia pseudotuberculosis IP 31758]
 gi|166918727|sp|A7FPB5|RECF_YERP3 RecName: Full=DNA replication and repair protein recF
 gi|152958496|gb|ABS45957.1| DNA replication and repair protein recF [Yersinia
           pseudotuberculosis IP 31758]
          Length = 361

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 155/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHEC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     RV+  E  A + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  AEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +   + + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I         P   LS + F  G   +S      +Y +
Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T +GPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+ 
Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351

Query: 369 N 369
           +
Sbjct: 352 H 352


>gi|150026041|ref|YP_001296867.1| DNA replication and repair protein RecF [Flavobacterium
           psychrophilum JIP02/86]
 gi|226737800|sp|A6H141|RECF_FLAPJ RecName: Full=DNA replication and repair protein recF
 gi|149772582|emb|CAL44065.1| DNA replication and repair protein RecF [Flavobacterium
           psychrophilum JIP02/86]
          Length = 359

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 162/362 (44%), Gaps = 44/362 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYADVT 65
           +K +++  F+N++     F+ +   FVG NGVGKTN+L+AI  LS G+  F   +  ++ 
Sbjct: 3   LKKISLFNFKNFSDTSFNFEHKINCFVGKNGVGKTNVLDAIYHLSFGKSYFNTLAVQNIK 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                 FF      +  E   +I   L+       + L+ N    ++ ++ + HL    L
Sbjct: 63  H--DEDFFVIDGEFDKQERSENILCSLKKGQK---KILKRNG---KIYEKFSDHLGFIPL 114

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYF 178
           V   P+   +    S  RR+F+D ++  +D ++ + +I +++++  RN LL        F
Sbjct: 115 VIISPTDADLIREGSETRRKFIDSVISQLDNQYLQGLILYQKVLSQRNALLKYFAVNRIF 174

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKF 236
           ++        Q+ +LG  I   R + +N    +   + Q    +   ++L     L+   
Sbjct: 175 ETGTLDIYNEQLNDLGQSIFEKRKQFLNDFIPIFNSFYQNISNSAETVQLEYESQLEK-- 232

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH------GSTG 290
            Q   +L +E   K       D   + T +G H+ DL       +  IAH      GS G
Sbjct: 233 -QDLLSLLQENINK-------DRSLQYTSVGVHKDDL-------SFNIAHYPIKKFGSQG 277

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMT 348
           +QK  L+ + LA    +   +G  PILL D+I   LDE +   +  +V   D G Q+F++
Sbjct: 278 QQKSFLIALKLAQFEFVKKQSGEKPILLFDDIFDKLDETRVEKIVAMVNNDDFG-QLFIS 336

Query: 349 GT 350
            T
Sbjct: 337 DT 338


>gi|148927274|ref|ZP_01810844.1| DNA replication and repair protein RecF [candidate division TM7
           genomosp. GTL1]
 gi|147887333|gb|EDK72787.1| DNA replication and repair protein RecF [candidate division TM7
           genomosp. GTL1]
          Length = 351

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 154/343 (44%), Gaps = 13/343 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FR+Y    +      TI  G NG GKTN+LEA+  L+ G  F RAS  ++ +IG 
Sbjct: 5   LRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSF-RASDQELGQIGM 63

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             ++   AR+   E     SI  E       +   ++ V  + +   +K L +    P  
Sbjct: 64  -DWWRLDARLVANESR---SILFEAEKTTGRKTFILDGVKKQRLTYQHK-LPVVLFEPGD 118

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            R+  G    RR F+D ++  ++P +   +  ++R+++ RN LL   +         +  
Sbjct: 119 LRLLHGSPARRRLFIDTLISQLEPLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVWDVA 178

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           ++E G +I   R +    L++ + E  +     H K  ++  L   F +   ++++    
Sbjct: 179 LSEYGARIVAERQKYSALLNASLRE--RYRAIAHTKDIVS--LAYSFQEGAESVQQAMVS 234

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHARLIS 308
            L      D     T +GPHR DLI    D +A +IA  S GE + +++ +      ++ 
Sbjct: 235 ALHAHHVRDKALGYTTVGPHRHDLIFSMNDVEATSIA--SRGETRSIVLALKFIEVEMLR 292

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
                 P+LLLD++ + LD  +R AL  + +   + I  T  D
Sbjct: 293 VYRDQPPLLLLDDVFSELDSTRRMALVEVGSSTQTVITTTNAD 335


>gi|291531946|emb|CBK97531.1| recF protein [Eubacterium siraeum 70/3]
          Length = 377

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 164/375 (43%), Gaps = 49/375 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASYA 62
           ++IK L +  FRN       F     +  G+N  GKTN+ EAIS  + P  R  R++SY 
Sbjct: 1   MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAISLCMGPSFRTSRQSSYI 60

Query: 63  DVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
             +   S        +F+T    +  E L + +I    ++      ++ N + I+   EL
Sbjct: 61  PFSLDNSKEKCVIKMWFTTSFNTDS-ENLIEFTICNNKKE------IKYNGLSIKSALEL 113

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              L+    +P    +  G+   RR +LD +     P H +++  + + ++ +N LL   
Sbjct: 114 YGVLKYVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFGI 173

Query: 177 YFD----------SSWCSSIEAQMAELGVKINIARVEMINAL----SSLIMEYVQKENFP 222
            F            SW S + A+    G+ +   R++  + L    S L  E    EN  
Sbjct: 174 NFSDDLSVIRPQIESWNSVLAAE----GLNVTYGRLKYFSLLETIASQLYNELSGGEN-- 227

Query: 223 HIKLSLTGFLDGKFD------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
              L+L  +    FD      +   +L  EY ++L +  + +   R T++G HR D+ + 
Sbjct: 228 ---LTLK-YYSSIFDSTELKCEEINSLYNEYLERLNNSFQRELKMRYTVLGVHRDDMNL- 282

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
           Y D       GS G+Q+   + + LA A +I       PI++LD++ + LD  ++  +  
Sbjct: 283 YIDNNDVKEFGSQGQQRSTALALKLAEAEIIRQKDE-TPIMILDDVLSELDAGRQRFVLN 341

Query: 337 IVTDIGSQIFMTGTD 351
            +  I SQ+F+T  +
Sbjct: 342 HI--INSQVFITCCN 354


>gi|238750287|ref|ZP_04611789.1| DNA replication and repair protein recF [Yersinia rohdei ATCC
           43380]
 gi|238711520|gb|EEQ03736.1| DNA replication and repair protein recF [Yersinia rohdei ATCC
           43380]
          Length = 361

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 154/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P F     RV+  E  + + +      D  VR   I+      V EL + L +  + P  
Sbjct: 66  PEFV-LHGRVDANERESSVGLSKSRLGDSKVR---IDGTDGHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +   + + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I         P   LS + F  G   +S      +Y +
Sbjct: 181 IIPLAERISEWRAAYSDAMAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T +GPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+ 
Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351

Query: 369 N 369
           +
Sbjct: 352 H 352


>gi|157368283|ref|YP_001476272.1| recombination protein F [Serratia proteamaculans 568]
 gi|166918726|sp|A8G7Q4|RECF_SERP5 RecName: Full=DNA replication and repair protein recF
 gi|157320047|gb|ABV39144.1| DNA replication and repair protein RecF [Serratia proteamaculans
           568]
          Length = 361

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 154/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEA+  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEAADLALAPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P F     R++G E    + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  PEFI-LHGRIDGAEREISVGLSKSRQGDSKVR---IDGSDGHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +   + + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I      +  P   LS + F  G   +S      +Y +
Sbjct: 181 LIPLAERISEWRAAYSDAIAADITATC-AQFLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T +GPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + L+D+ ++ LD  +R  L   +    +Q+F++  + + V D   E  K  R+ 
Sbjct: 292 QSGRRCLYLIDDFASELDTGRRRLLADRLKATQAQVFVSAVSAEQVTDMAGEKGKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|255326479|ref|ZP_05367561.1| DNA replication and repair protein RecF [Rothia mucilaginosa ATCC
           25296]
 gi|255296519|gb|EET75854.1| DNA replication and repair protein RecF [Rothia mucilaginosa ATCC
           25296]
          Length = 409

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 159/374 (42%), Gaps = 50/374 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  +++ ++R YA L L   A  T+F+G NGVGKTNI+EAI + +     R +    + R
Sbjct: 3   IDHISLLDYRTYALLSLPLSAGVTVFLGSNGVGKTNIVEAIDYAASLSSHRVSHDGPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+      + R   + G      + E    +S R ++IN        E     R     
Sbjct: 63  AGAS---RAYIRTRTVRGSQQTVTEFEIAPGQSNR-VRINRAAPVRAKEALGIARTVLFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS------ 180
           P   ++  G    RRRF+D +  ++ P       ++ER++R RN LL      +      
Sbjct: 119 PEDLQLVKGDPAGRRRFVDDLASSLRPVVSGYRSEYERILRQRNSLLKSMQRKARDENAL 178

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           S  S  + Q++ LG ++  AR  ++                P ++ +  G  DG  +  F
Sbjct: 179 STLSVWDEQLSTLGAQLLSARFRLLQRF------------LPQLRRAYAGLTDGSKEVGF 226

Query: 241 -----------------CALK--EEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDY 277
                             AL   E+  + L  G   R+ D + R  TL+GPHR D+ +  
Sbjct: 227 NYESTVFSSMGERSIEHAALMRIEDLKEALMRGFAERRRDEIERGVTLVGPHREDITLLL 286

Query: 278 CDKAIT--IAHGSTGEQKVVL-VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
               +    +HG +    + L +  +  H     ++ G +PIL+LD++ A LD  +R+ L
Sbjct: 287 GGMPVKHFASHGESWSFALALKLASWFVHVE-DDSSAGSSPILILDDVFAELDSARRHRL 345

Query: 335 FRIVTDIGSQIFMT 348
             +V D   Q+ +T
Sbjct: 346 GVMVAD-AEQVLIT 358


>gi|262374721|ref|ZP_06067993.1| recombinational DNA repair ATPase [Acinetobacter junii SH205]
 gi|262310377|gb|EEY91469.1| recombinational DNA repair ATPase [Acinetobacter junii SH205]
          Length = 360

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 158/365 (43%), Gaps = 34/365 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASY 61
           ++I  LNI   RN  ++ L       IF G NG GKT+ILE+I  L+ GR FR      Y
Sbjct: 1   MQITRLNIERVRNLKTVALTELQPFNIFYGANGSGKTSILESIHLLATGRSFRTHIPKHY 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                  +  F  +     GM+ L               + +++N   I    +L K L 
Sbjct: 61  IQHQCNDAIVFAQSATERVGMKKLIS-----------GEQLIKVNGDTIATQGQLAKLLP 109

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDS 180
           +  + P    I    +  RR+ LD ++F ++P        + R ++ RN LL T      
Sbjct: 110 LQHIDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNSLLKTRRNLSL 169

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           S        ++E G  ++  R+ ++   +    E +Q +  P I + L  +     +Q  
Sbjct: 170 SELEPWNKMLSEYGEILHSQRISIVEQWNQYFREDLQ-QLLPDIDIELEYYSGFHTEQGL 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY----CDKAITIAHGSTGEQKVVL 296
                   + L    + D   R T  GPHR+DL +       D  +     S G++K+++
Sbjct: 229 F-------QDLIQQHQKDLERRYTEYGPHRADLRLKTPQGNADDVL-----SRGQKKLLI 276

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVF 355
           + + L+   ++ + +    ++LLD+++A LD   +  L   ++ +GSQ+F+T  D  SV 
Sbjct: 277 MALKLSQIAML-HASNKETVVLLDDLTAELDVAAQQRLIERLSQLGSQVFLTTLDHASVL 335

Query: 356 DSLNE 360
             L++
Sbjct: 336 KHLHD 340


>gi|291558316|emb|CBL35433.1| Recombinational DNA repair ATPase (RecF pathway) [Eubacterium
           siraeum V10Sc8a]
          Length = 377

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 163/375 (43%), Gaps = 49/375 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASYA 62
           ++IK L +  FRN       F     +  G+N  GKTN+ EAIS  + P  R  R++SY 
Sbjct: 1   MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAISLCMGPSFRTSRQSSYI 60

Query: 63  DVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
             +   S        +F+T    +  E L + +I    ++      ++ N + I+   EL
Sbjct: 61  PFSLDNSKEKCVIKMWFTTSFNTDS-ENLIEFTICNNKKE------IKYNGLAIKSALEL 113

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              L+    +P    +  G+   RR +LD +     P H +++  + + ++ +N LL   
Sbjct: 114 YGVLKYVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFGI 173

Query: 177 YFD----------SSWCSSIEAQMAELGVKINIARVEMINAL----SSLIMEYVQKENFP 222
            F            SW S + A+    G+ +   R++  + L    S L  E    EN  
Sbjct: 174 NFGDDLSVIRPQIESWNSVLAAE----GLNVTYGRLKYFSLLETIASQLYNELSGGEN-- 227

Query: 223 HIKLSLTGFLDGKFD------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
              L+L  +    FD      +    L  EY ++L +  + +   R T++G HR D+ + 
Sbjct: 228 ---LTLK-YYSSIFDSTELKCEEINGLYNEYLERLNNSFQRELKMRYTVLGVHRDDMNL- 282

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
           Y D       GS G+Q+   + + LA A +I       PI++LD++ + LD  ++  +  
Sbjct: 283 YIDNNDVKEFGSQGQQRSTALALKLAEAEIIRQKDE-TPIMILDDVLSELDAGRQRFVLN 341

Query: 337 IVTDIGSQIFMTGTD 351
            +  I SQ+F+T  +
Sbjct: 342 HI--INSQVFITCCN 354


>gi|169632032|ref|YP_001705768.1| recombination protein F [Acinetobacter baumannii SDF]
 gi|259563351|sp|B0VMK2|RECF_ACIBS RecName: Full=DNA replication and repair protein recF
 gi|169150824|emb|CAO99424.1| DNA replication, recombinaison and repair protein [Acinetobacter
           baumannii]
          Length = 360

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 158/360 (43%), Gaps = 49/360 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66
           LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     +Y     
Sbjct: 6   LNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYEA 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F  +     GM+ LA              + +++N   +    +L K L +  + 
Sbjct: 66  DDAIVFAQSATEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHID 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P    I    +  RR+ LD ++F ++P        + R ++ RN LL T      +    
Sbjct: 115 PQSTEIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174

Query: 186 IEAQMAELGVKINIARVEMI--------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
               ++  G  ++  R+ ++        N LS L+         P +++ L      ++ 
Sbjct: 175 WNKMLSNYGEILHSQRLSIVEQWNVYFQNDLSQLL---------PDLEIEL------EYS 219

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL----IVDYCDKAITIAHGSTGEQK 293
             F   ++   + L +  + D   R T  GPHR+DL    +  + D  +     S G++K
Sbjct: 220 PGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRADLRLKTLFGHADDVL-----SRGQKK 273

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           ++++ + L+   ++ + +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D++
Sbjct: 274 LLIIALKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDRA 332


>gi|88854502|ref|ZP_01129169.1| recombination protein F [marine actinobacterium PHSC20C1]
 gi|88816310|gb|EAR26165.1| recombination protein F [marine actinobacterium PHSC20C1]
          Length = 387

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 166/369 (44%), Gaps = 34/369 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  +++ +FRNY  L L   +  T+ VG NG GKTN++EA+ FLS     R ++   + R
Sbjct: 3   VTHVDLKDFRNYKGLTLELSSGPTLIVGSNGQGKTNLVEALGFLSTLGSHRVSTDHAMVR 62

Query: 67  IGSPSFFSTFARVEGMEG--LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+ +      R+E  E   LA++ I   +  +R+    QIN  VIR   EL ++     
Sbjct: 63  QGTDAAI-VRVRLEHNERKFLAEVQIN-RSGANRA----QINRSVIR-TRELPRYFSSVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180
             P    +  G    RRRF+D ++    PR    + D+ER+++ RN LL      G  D+
Sbjct: 116 FAPEDLALVRGEPSGRRRFIDDLLVLRSPRFSGVIADYERVVKQRNMLLKSARASGIRDA 175

Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKF 236
             S     + ++ E G +I  AR  ++  LS  + +  ++        SL   L    + 
Sbjct: 176 NLSTLDVWDERLIEFGAEIISARSALVANLSPEVAKAYERIVGADHGASLANSLSIISRQ 235

Query: 237 DQSFCALKEE--------------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           D +  A+                 +   L   RK++     TL+GPHR DLI    +   
Sbjct: 236 DDAESAVATNDVGEIISVADATTAFTAALESVRKVERDRAITLVGPHRDDLIFG-LNGLP 294

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
              + S GE     + + LA A L+  ++    P+L+LD++ A LD+ +R  L   + + 
Sbjct: 295 ARGYASHGESWSFALSLKLASAELLRRDSAAGDPVLILDDVFAELDKSRRERLADSIANF 354

Query: 342 GSQIFMTGT 350
             Q+ +T  
Sbjct: 355 -EQVLITAA 362


>gi|217966464|ref|YP_002351970.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM
           6724]
 gi|217335563|gb|ACK41356.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM
           6724]
          Length = 340

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 148/348 (42%), Gaps = 32/348 (9%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ I+ + +  FRN++  +  F     +  G NG GKT+ILEA+++LS  R FR A    
Sbjct: 5   RMVIESIYLRNFRNFSDFKTNFKDGINVIYGPNGSGKTSILEAVAYLSNPRSFRGARDHQ 64

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI---RVVDELNKHL 120
           + ++G   FF    ++       +I+I     + +  +   ++   +   R + E+   +
Sbjct: 65  LIKLGE-KFFEINGKILSGNESHEITISYHHDEIKKEKIAYLDGFKVKRFRDIQEIFIAI 123

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
             S+   +M     G + +RR F D +   +D  +   + ++E+L+  RN LL E   D 
Sbjct: 124 PFSFKDYAM---IDGYATQRRDFFDDIFSLLDLEYYEILRNYEKLLDERNDLLKEENIDR 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  +M  L  KI   R  MI  LS                     +LD  F   +
Sbjct: 181 DYVIYLAKEMQPLAEKIVEKRETMIKELSK--------------------YLDPMFKVEY 220

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            +  E   K + D  + D     T +GPH  D    Y          S G+++++ + + 
Sbjct: 221 IS--EFKGKNIVDYIEEDIARGITTVGPHVHDDYTFYYKGNPAKYFASEGQKRLLYLSLV 278

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           LA  +LI  T  + P+ L D+    LD    + L + ++ +  Q+ + 
Sbjct: 279 LAFRKLIEETKLYEPVFLFDDPVNVLDP---HLLEKFISHLSGQVIIA 323


>gi|313902782|ref|ZP_07836179.1| DNA replication and repair protein RecF [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466902|gb|EFR62419.1| DNA replication and repair protein RecF [Thermaerobacter
           subterraneus DSM 13965]
          Length = 377

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 157/371 (42%), Gaps = 43/371 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + + +FR+Y    L  D+  T+  G NG+GKTN+LEAI F + GR  R     D+ R
Sbjct: 3   IRRVVLRQFRSYEQATLELDSGLTLLAGPNGIGKTNLLEAIHFAATGRSPRTTRDTDLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+P     + RVE  + +A   +       +  + L+++    + + +L   L I +  
Sbjct: 63  HGAP---LAYVRVEWDDPVAGRRVVEMALHRQHGKALRLDGRKRQRLADLQGALPIVYFA 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSWC 183
           P    +       RR FLD ++  + P + + + D++R++  RN+LL E   G    S  
Sbjct: 120 PESLALVKAGPAARRGFLDDLLGQLVPGYTQLLHDYQRVLAQRNQLLREIRAGRAAGSLL 179

Query: 184 SSIEAQMAELGVKINIAR-------------------VEMINALSSLIMEYVQKENFPHI 224
           +  +  +   G  I   R                            L ++Y+  E     
Sbjct: 180 AIWDEPLYRHGQAIRQRRRRLLDELAPLAAAAAGRVAAGGAAGAGVLELDYLAAEP---- 235

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
                   DG+ +    +  E  A   F   ++   +  TL GP R D  + + D     
Sbjct: 236 --------DGRVEGGAVSSPEGLAA--FHREEVARGT--TLWGPQRDDFAL-FLDGQDAR 282

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
           A  S G+Q+ + + + LA   LI    G  P+LLLD++ + LD  +R  L   V D+  Q
Sbjct: 283 AFASQGQQRALALALTLAQVELIHRRLGRWPVLLLDDVLSELDGKRRRYLLEAVCDL-PQ 341

Query: 345 IFMTGTDKSVF 355
           + +T T+   +
Sbjct: 342 VILTATEPPEW 352


>gi|289826403|ref|ZP_06545515.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 357

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 159/362 (43%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      + EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEECETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E  +A++  + +  Q +  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 TV 350


>gi|167621944|ref|YP_001672238.1| recombination protein F [Shewanella halifaxensis HAW-EB4]
 gi|189039642|sp|B0TLA6|RECF_SHEHH RecName: Full=DNA replication and repair protein recF
 gi|167351966|gb|ABZ74579.1| DNA replication and repair protein RecF [Shewanella halifaxensis
           HAW-EB4]
          Length = 365

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 160/355 (45%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  FRN +  +L       +  G NG GKT+ILEAI FL  GR FR      V +   
Sbjct: 6   LHIETFRNISLAQLDPGDGLNLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRVIQHND 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-S 128
               + FA +   E  + I ++     +  V+   IN   I+ +  L + L I  + P S
Sbjct: 66  DKL-TLFANLSVCEQESKIGLRRFRNGETEVK---INGDNIKRLSTLAETLPIQVITPES 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCSSI 186
              +F G    RR+F+D   F  D        +  R+++ RN+LL     Y    +    
Sbjct: 122 FSLLFEG-PKSRRQFIDWGAFHSDKSFHLAWANVRRILKQRNQLLKNQVSYSQIQYWDKE 180

Query: 187 EAQMAELGVKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             + +E   +I    V+ +N  L  +I E++       +K+S T   D K D  F  L E
Sbjct: 181 LVRYSEQVTEIRKQYVDSLNEQLKGIIGEFLP---LVEVKVSFTRGWDSKTD--FGQLLE 235

Query: 246 -EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + +  G         T  GPH++DL +      +  A  S G+ K+++  + +A  
Sbjct: 236 TQYLRDVAAGN--------TGSGPHKADLRLRVGVLPVQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL 358
           +L+   T    I L+D++ + LD   R  L + + D G+Q+F+T  +  ++ DSL
Sbjct: 287 KLLKQQTDKNSIYLVDDLPSELDAQHRKLLLQQLMDTGAQVFVTAIEPAAIVDSL 341


>gi|227893835|ref|ZP_04011640.1| recombination protein F [Lactobacillus ultunensis DSM 16047]
 gi|227864324|gb|EEJ71745.1| recombination protein F [Lactobacillus ultunensis DSM 16047]
          Length = 375

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 153/353 (43%), Gaps = 26/353 (7%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FRN   L + FD    IF+G N  GKTN+LEAI FL+  R  R  S  D   IG   
Sbjct: 8   VQNFRNLKKLDVKFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNS--DKELIG--- 62

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
           F   +  + G    + + + L     +  + + IN V    + +    L      P    
Sbjct: 63  FGGEYTNLLGHVQKSQVDLTLRVLITKKGKKVWINRVEQSKLSKYVGQLNAILFSPEDLE 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187
           +  G    RRRF+D+    I+P +      + +++  +N  L +       D  +   + 
Sbjct: 123 LIKGAPALRRRFMDQEFGQINPEYLYFASKYRQVLIQKNNYLKQLSKGKAKDKVFLDVLS 182

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE- 246
            Q+A +  ++   R + +  LS     +   + + HI L  +  L   +  S   +K + 
Sbjct: 183 DQLAGIAAEVISRRFKFLRYLS-----HYASDAYAHISLG-SEQLAIAYHPSVSDIKADD 236

Query: 247 -----YAKKLFD-GRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                Y K L    R  D+  R+  T  GPHR D+      K   + + S G+Q+ + + 
Sbjct: 237 STEDIYHKILASFERNKDTEIRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIALS 295

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           + LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD
Sbjct: 296 VKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHG-KTQTFITTTD 347


>gi|110640083|ref|YP_680293.1| DNA replication and repair protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|123354188|sp|Q11NR3|RECF_CYTH3 RecName: Full=DNA replication and repair protein recF
 gi|110282764|gb|ABG60950.1| DNA replication and repair protein [Cytophaga hutchinsonii ATCC
           33406]
          Length = 377

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 146/351 (41%), Gaps = 28/351 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI  LN   F+NY  L L F A   +F G NG GKTN+L++I  L   + F   +     
Sbjct: 5   KISLLN---FKNYPELELSFSAGINLFAGLNGSGKTNLLDSIYCLCLTKSFLSTTDQQTI 61

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             G   +FS     +  E   +  I+ +   D   +   ++      + E         L
Sbjct: 62  TTGQ-GYFSALGWFQ--ENAKEFKIQYDF--DGKKKSFTVDKKPYAKISEHIGRFPAIVL 116

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG----YFDSS 181
            P    +    S +RRRF D +    D  +   +I +   ++ RN LL +       D  
Sbjct: 117 TPHDTDLIRNSSEDRRRFFDTLFSQADHVYLDALIRYNHFIKQRNALLKQAADGMLVDRI 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFDQ 238
              + +  + + G  I   R E +  L  +  EY    +  H    +   T  L   F+Q
Sbjct: 177 LMDAYDHNLLQSGKIIAQKRDEYLKRLLPIFQEYYSLLSPDHEATDIEYETNVLSADFEQ 236

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            F   K+ Y+K L        + +RT  G H+ D      ++ I   +GS G+QK  ++ 
Sbjct: 237 VF---KDSYSKDL--------ILQRTNKGVHKDDFKFLINNEPIK-HYGSQGQQKTFVIA 284

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMT 348
           + LA   L+   TG  PILL+D+I   LD+ +   L  +V   I  Q+F++
Sbjct: 285 LKLAQYELLKACTGHNPILLMDDIFDKLDDLRIEKLIHLVQKYITGQLFIS 335


>gi|167957125|ref|ZP_02544199.1| DNA replication and repair protein RecF [candidate division TM7
           single-cell isolate TM7c]
          Length = 347

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 147/326 (45%), Gaps = 22/326 (6%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS 89
           T+ +G NG GKT +LEA+     G  FR  S  D+ +         + R+       D S
Sbjct: 26  TVIIGKNGSGKTTLLEALYIALRGTSFR-GSDNDILQ-----HDKDWWRIHVSTTNGDRS 79

Query: 90  IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149
           I  +   + S R   + D         NK + +    P   R+  G    RR F+D  + 
Sbjct: 80  IAYDNSGENSPRKKILIDERKFQRMPSNKKIPVVLFEPDDLRVLHGSPSRRRNFIDTFIM 139

Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209
            I+P +   +  +ER ++ RN LL +     S   + +  MA+ G +I   RV +I+ ++
Sbjct: 140 HINPHYGTIIRKYERALKQRNTLLKQENASRSNIFAWDMAMAQYGAEIISQRVMIISKIN 199

Query: 210 SLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFC-ALKEEYAKKLFDGRKMDSMSRRTL 265
             + +  Q         S+ G    +D  +  +    ++++ A  L+   + D +   T 
Sbjct: 200 QELTKTYQ---------SIAGNNDTVDLHYSHTLIDNIQQKLANMLYASFERDKILGFTS 250

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           +GPHR D++ ++ +  I     S GE + +++ +      +    TG +P++LLD++ A 
Sbjct: 251 VGPHRHDVMFEF-NGQIAAKVASRGEVRSIILALKFIEVDITQEATGLSPVILLDDVFAE 309

Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTD 351
           LDE ++  L     D  +Q+F+T T+
Sbjct: 310 LDETRQRRLAEKCRD--NQMFITSTN 333


>gi|156936080|ref|YP_001439996.1| recombination protein F [Cronobacter sakazakii ATCC BAA-894]
 gi|260595832|ref|YP_003208403.1| recombination protein F [Cronobacter turicensis z3032]
 gi|166220710|sp|A7MMZ8|RECF_ENTS8 RecName: Full=DNA replication and repair protein recF
 gi|156534334|gb|ABU79160.1| hypothetical protein ESA_03974 [Cronobacter sakazakii ATCC BAA-894]
 gi|260215009|emb|CBA26672.1| DNA replication and repair protein recF [Cronobacter turicensis
           z3032]
          Length = 357

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 159/362 (43%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    + +  +   D +VR   I+      V EL + + +  + P  
Sbjct: 66  DAFI-LHGRLQGDEREVSVGLTKDRNGDSTVR---IDGSDGHKVAELAQLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             +  G    RR FLD   F  +P       + +RL++ RN   R +T       W    
Sbjct: 122 FTLLGGGPKYRRAFLDWGCFHNEPGFFVAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R     A+++ + +    +  P   L+ + F  G   +S      +
Sbjct: 178 DRELVPLAEQISQWRASYSEAIANDMADTC-AQFLPEFSLTFS-FQRGWEKES------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L  G + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YADVLERGFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L + +    SQ+F++  + + + D  ++ +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLAQRLKATQSQVFVSAISAEHILDMTDKNSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 AV 350


>gi|27364431|ref|NP_759959.1| recombination protein F [Vibrio vulnificus CMCP6]
 gi|32129961|sp|Q8DDJ1|RECF_VIBVU RecName: Full=DNA replication and repair protein recF
 gi|27360550|gb|AAO09486.1| DNA recombination and repair protein RecF [Vibrio vulnificus CMCP6]
          Length = 359

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 162/363 (44%), Gaps = 18/363 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +         +G NG GKT++LEAI  L  GR F+ A    V +   
Sbjct: 6   LIIQQFRNIKACDIALSPGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSALTGRVIQNEC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              F  + R    +   ++ I +  + D +   ++I     + + +L + L +  + P  
Sbjct: 66  DQLF-VYGRFLNSDQF-ELPIGINKQRDGTTE-VKIGGQSGQKLAQLAQVLPLQLIHPEG 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIE 187
             + +     RR F+D  VF  +P        F+RL + RN LL   + Y + S+     
Sbjct: 123 FDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKSAKSYQELSYWDKEM 182

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           A++AEL   I+  R + +  + S   +  Q E  P   + L  +   + +  +  + EE 
Sbjct: 183 ARLAEL---ISQWRADYVAQMQSKAEQLCQ-EFLPEFHIQLKYYRGWEKETPYQQILEEN 238

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
            ++       D     T+ GP+++DL +   +  +     S G+ K+++  + LA  + +
Sbjct: 239 FER-------DQTLGYTVSGPNKADLRIKVNNTPVEDVL-SRGQLKLMVCALRLAQGQHL 290

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMR 366
           +  TG   + L+D+ ++ LD  +R  L   +   G+Q+F++  T+  + D  +++ +   
Sbjct: 291 TEKTGKQCVYLIDDFASELDSQRRKRLADCLKQTGAQVFVSSITENQISDMRDDSGRLFH 350

Query: 367 ISN 369
           +  
Sbjct: 351 VEQ 353


>gi|254230347|ref|ZP_04923733.1| Recombinational DNA repair ATPase [Vibrio sp. Ex25]
 gi|262392781|ref|YP_003284635.1| DNA recombination and repair protein RecF [Vibrio sp. Ex25]
 gi|151937139|gb|EDN56011.1| Recombinational DNA repair ATPase [Vibrio sp. Ex25]
 gi|262336375|gb|ACY50170.1| DNA recombination and repair protein RecF [Vibrio sp. Ex25]
          Length = 359

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 161/365 (44%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEA+  L  GR F+ +    V +   
Sbjct: 6   LIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRVIQNEC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +     RR F+D  VF  +P   +    F+RL + RN LL     Y + S+   
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYQAWGRFKRLNKQRNALLKTANSYRELSYW-- 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + +MA L   I+  R   I  + + + E + +   P  ++ L  +     D  +     
Sbjct: 179 -DQEMAGLAENISQWRASYIEQMKT-VAETICQTFLPEFEIQLKYYRGWDKDTPY----H 232

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  +K F+    D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 233 EILEKNFE---RDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L++  K 
Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDNGKL 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|113475400|ref|YP_721461.1| recombination protein F [Trichodesmium erythraeum IMS101]
 gi|123352421|sp|Q114T6|RECF_TRIEI RecName: Full=DNA replication and repair protein recF
 gi|110166448|gb|ABG50988.1| DNA replication and repair protein RecF [Trichodesmium erythraeum
           IMS101]
          Length = 390

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 174/374 (46%), Gaps = 33/374 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++ +FRNY   ++ FD   TI +GDN  GK+N+LE++  LS  +  R     D+  
Sbjct: 3   LKHLHLRQFRNYRDQQVKFDGAKTILLGDNAQGKSNLLESVELLSTLKSHRAIRDRDLI- 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           + S       A +E   G  D+++ L ++  R+V      + + R +D L+    + +  
Sbjct: 62  LDSKQASKIQASLERQLGNIDLALTLRSQGKRTVAV--NGETISRHLDFLSILNVVHFSS 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----------TE 175
             +D +  G  + RR +LDR++  ++P +   ++ + +++R RN LL           T 
Sbjct: 120 LDLDLVRGGPEV-RRYWLDRLLVQLEPVYAHILLQYNQVLRQRNALLKKIRQQKMAAETT 178

Query: 176 GYFDSSWCSSI---EAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFP 222
           G   S     +   +AQ+A  G ++   R  ++  L+ L           ME  + E   
Sbjct: 179 GSSPSILTQELALWDAQLATTGSRVIRRRQRLLQKLAPLAGEWHCAISGSMEVFKMEYLA 238

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           ++ +     +      S   +++ + +K+      +     T++GPHR D+I    D   
Sbjct: 239 NVIVDSNELI---IQDSLEGVRQAFLEKIKVRAIAEQYQGTTVVGPHRDDVIFTINDTPA 295

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              +GS G+Q+ +++ + LA  +LI       P+LLLD++ A LD  ++N L   +++  
Sbjct: 296 R-QYGSQGQQRTLVLALKLAELQLIEEVVQEPPLLLLDDVLAELDLHRQNQLLEAISN-R 353

Query: 343 SQIFMTGTDKSVFD 356
            Q  +T T    FD
Sbjct: 354 FQTLITTTHLGCFD 367


>gi|159904234|ref|YP_001551578.1| recombination protein F [Prochlorococcus marinus str. MIT 9211]
 gi|159889410|gb|ABX09624.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9211]
          Length = 352

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 148/337 (43%), Gaps = 22/337 (6%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS-FFSTFARVEGMEGLADIS 89
           + +G NG+GK+N+LEA+  L   R  R +S  D+      S         E         
Sbjct: 7   LVIGPNGIGKSNLLEAVELLGSLRSHRASSDQDLIHWEEKSALLRAITEDED-------K 59

Query: 90  IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149
           I+LE R     +  + +  + R +D +   LR          +  G    RR +LDR+V 
Sbjct: 60  IELELRKKGGRKAYRNDKCLSRQIDLIGP-LRCVGFSALDLHLVRGEPSLRRHWLDRVVL 118

Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSIEAQMAELGVKINIARVEM 204
            ++P +   M    RL+R RN+L       SS        + + Q+A +  +I+  R   
Sbjct: 119 QLEPVYSDLMSRLIRLLRQRNQLWRNWKHTSSKDYGTLLDAFDVQLALVSTRIHRRRQRA 178

Query: 205 INALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           +N L  L + + ++ +  +  L L      FL+ + ++  C L  E  K+L + R ++  
Sbjct: 179 LNRLKPLAILWQERLSKGNEALELHYLPGSFLEKQDEELECRLSIE--KQLLEQRAVEQK 236

Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
                +GPHR D I    + A     GS G+Q+ +++ + LA   LI    G APIL+LD
Sbjct: 237 LGHCRVGPHR-DEIEFLLNGASARRFGSAGQQRTIVLSLKLAELELIGEIYGEAPILILD 295

Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           ++ A LD  ++  L   V     Q  ++ T    F+ 
Sbjct: 296 DVLAELDPMRQLLLLEAVGH-KHQCLISATHLDAFEG 331


>gi|1074046|pir||I64106 recF protein - Haemophilus influenzae (strain Rd KW20)
          Length = 375

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 164/370 (44%), Gaps = 23/370 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 17  MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 76

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    I ++   + +  V+   IN      + +L   L +  
Sbjct: 77  ISYDEPH-FTLFGQIQESQHQWSIGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 132

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 133 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSAIKI 192

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           W    + ++A+L  +++  R E   ALS  I +  Q    P ++++++      F Q + 
Sbjct: 193 W----DVELAKLAHQVSEWRAEYAEALSPEIEQTCQL-FLPELEINVS------FHQGW- 240

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIF 300
               +Y + L    + D     T  GP ++D    +  + + +    S G+ K+++  + 
Sbjct: 241 EKNADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALR 298

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLN 359
           LA    +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   
Sbjct: 299 LAQGEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQV 358

Query: 360 ETAKFMRISN 369
           E  K   + N
Sbjct: 359 ENKKMFSVHN 368


>gi|119953227|ref|YP_945436.1| DNA replication and repair protein RecF [Borrelia turicatae 91E135]
 gi|119861998|gb|AAX17766.1| DNA replication and repair protein RecF [Borrelia turicatae 91E135]
          Length = 358

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 163/370 (44%), Gaps = 29/370 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           K++F N   F+N  +  + FD  +  F G+NG GKTNIL+AI  L+    F   +  ++ 
Sbjct: 7   KVEFFN---FKNIENRVINFDFNNIYFCGENGSGKTNILDAIYCLAFASSFLVRTDRELI 63

Query: 66  RIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI-S 123
             G   F+   F   EG  G   +S++   ++      +++N+ +++  D  N  L I S
Sbjct: 64  TYGKTEFYLKCFYNTEGKAGEIGLSLRNGKKE------IKVNNSIVK--DRKNLILNIPS 115

Query: 124 WLVPSMDRIF-SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            +  + D  F  G   ++R F D+ +  +   +   +  + ++++ RN +L +G  +   
Sbjct: 116 VIFSNYDTDFIIGAPAKKRWFFDQAISLVSLSYLDSLRKYRKILQQRNLILRQG--NKDL 173

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-C 241
                    +   +I   R   I         Y            ++  L+ K+  S  C
Sbjct: 174 LKVYNETFVDFAFEITKMRENFIKHFYEFFKYYYS------FIFDVSYSLEIKYLPSVKC 227

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           + ++E+ + L    + +  S  TLIGPHR DL      + +   H STG+ + + +   L
Sbjct: 228 SKRDEFLQTLLLKEQDELYSESTLIGPHR-DLYEILSGERVFTHHSSTGQIRALALIYRL 286

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
               + +   G APILL D++   LD  +R  +F I+    SQ F T  D      + + 
Sbjct: 287 IQVIMFNKQFGIAPILLFDDVFLELDSMRRKRIFDILPK-DSQCFFTFLDDCY--DIKQD 343

Query: 362 AKFM--RISN 369
           +KF+  RI N
Sbjct: 344 SKFIVYRIKN 353


>gi|217967931|ref|YP_002353437.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM
           6724]
 gi|217337030|gb|ACK42823.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM
           6724]
          Length = 359

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 160/357 (44%), Gaps = 46/357 (12%)

Query: 10  LNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
           L +  FRN  +L L  FD    IF G+N  GKTNILE I FL  G+ FR  +  ++ R G
Sbjct: 6   LKVINFRNLKNLSLNFFDV--NIFYGENAQGKTNILEGIYFLFSGKSFRTKNEKEIIRWG 63

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP- 127
             SF+     ++G       ++ LET      + ++IN         L ++  + +L P 
Sbjct: 64  EESFY-----LKGNVDWQSQNLILETALSGEEKRIKINQ------KNLKRYRDMVFLFPI 112

Query: 128 ---SMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
              S + I  F     +RR  L+R +  +  ++ + + ++ + +  RN  L      S W
Sbjct: 113 ILFSQEEIENFKKGPSQRRYLLNRFISTLSYKYHKALSEYYKALYQRNLTLKNERDVSLW 172

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQS- 239
            S+    +  LG  I   R  ++  +   + E         +  +L G  FL+ ++  S 
Sbjct: 173 NST----LIRLGGYILFERRNVMEEIKRKVKE---------VSNNLLGRDFLEVEYLSSV 219

Query: 240 -FCALKEEYAKK----LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI---AHGSTGE 291
                +EE  K     L +    +   + TL+GPHR D+I+      +       GS GE
Sbjct: 220 PLGDSEEEMLKNFETMLKEKEWEEKRKKYTLVGPHRDDVILRVIRDNVKYDLRKFGSAGE 279

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           +K+  +   LA   ++S      PILL+D++   LDEDK+  ++  + +   QIF+T
Sbjct: 280 KKLGYIIWKLAQVEILSENRKEKPILLIDDLFGDLDEDKQRKVWEGIKNF--QIFLT 334


>gi|153835129|ref|ZP_01987796.1| DNA replication and repair protein RecF [Vibrio harveyi HY01]
 gi|156972779|ref|YP_001443686.1| recombination protein F [Vibrio harveyi ATCC BAA-1116]
 gi|166221877|sp|A7N1F1|RECF_VIBHB RecName: Full=DNA replication and repair protein recF
 gi|148868401|gb|EDL67515.1| DNA replication and repair protein RecF [Vibrio harveyi HY01]
 gi|156524373|gb|ABU69459.1| hypothetical protein VIBHAR_00444 [Vibrio harveyi ATCC BAA-1116]
          Length = 357

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 161/365 (44%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V +   
Sbjct: 6   LIIQQFRNIKACDIDLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNEC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +     RR F+D  VF  +P        F+RL + RN LL     Y + S+   
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTARSYRELSYW-- 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + +MA L   I+  R   I  + + + E + +   P  ++ L  +     D  +     
Sbjct: 179 -DQEMAHLAENISQWRALYIEQMKT-VAETICQTFLPEFEIQLKYYRGWDKDTPY----H 232

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  +K F+    D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 233 EILEKNFE---RDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L++T K 
Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDTGKL 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|16762489|ref|NP_458106.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143977|ref|NP_807319.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|168818304|ref|ZP_02830304.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|213052918|ref|ZP_03345796.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213581831|ref|ZP_03363657.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213609169|ref|ZP_03368995.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|20978597|sp|Q8Z2N4|RECF_SALTI RecName: Full=DNA replication and repair protein recF
 gi|25300556|pir||AC0958 recF protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504794|emb|CAD03159.1| recF protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139613|gb|AAO71179.1| recF protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|205344501|gb|EDZ31265.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320088257|emb|CBY98019.1| DNA replication and repair protein recF [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 357

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 159/362 (43%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      + EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E  +A++  + +  Q +  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 TV 350


>gi|320539856|ref|ZP_08039515.1| putative gap repair protein [Serratia symbiotica str. Tucson]
 gi|320030042|gb|EFW12062.1| putative gap repair protein [Serratia symbiotica str. Tucson]
          Length = 361

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 159/361 (44%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEA+  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P F     R++G E   +IS+ L +++ +S   ++I+      V EL + L +  + P  
Sbjct: 66  PEFV-LHGRIDGAE--REISVGL-SKNRQSESKVRIDGSDSHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  DP         +RL++ RN  L +     +   + + Q
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNDPGFFTAWSHLKRLLKQRNAALRQ-VSRYAQIRAWDQQ 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R +   A+++ I      +  P   LS + F  G   +S      E  +
Sbjct: 181 LIPLAERISEWRAKYSEAIAADITATC-AQFLPEFALSFS-FQRGWEKESDYG---ELLE 235

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +LF+    D     T  GPH++D  +      +     S G+ K+++  + LA    ++ 
Sbjct: 236 RLFE---RDRTLTYTAAGPHKADFRIRAAGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + L+D+ ++ LD  +R  L   +    +Q+F++  + + V D   E  K  R+ 
Sbjct: 292 QSGRRCLYLIDDFASELDIGRRRLLADRLKATQAQVFVSAVSAEQVTDMAGEKGKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|62182324|ref|YP_218741.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|168233390|ref|ZP_02658448.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168260380|ref|ZP_02682353.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|197251211|ref|YP_002148774.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263684|ref|ZP_03163758.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198244935|ref|YP_002217786.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205354577|ref|YP_002228378.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207859062|ref|YP_002245713.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224585635|ref|YP_002639434.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238913089|ref|ZP_04656926.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|75505469|sp|Q57I02|RECF_SALCH RecName: Full=DNA replication and repair protein recF
 gi|226737826|sp|B5EYB2|RECF_SALA4 RecName: Full=DNA replication and repair protein recF
 gi|226737827|sp|B5FN08|RECF_SALDC RecName: Full=DNA replication and repair protein recF
 gi|226737828|sp|B5QUP8|RECF_SALEP RecName: Full=DNA replication and repair protein recF
 gi|226737829|sp|B5RFY9|RECF_SALG2 RecName: Full=DNA replication and repair protein recF
 gi|254790486|sp|C0Q2K7|RECF_SALPC RecName: Full=DNA replication and repair protein recF
 gi|62129957|gb|AAX67660.1| gap repair protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|197214914|gb|ACH52311.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241939|gb|EDY24559.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197939451|gb|ACH76784.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205274358|emb|CAR39383.1| recF protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205332587|gb|EDZ19351.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205350391|gb|EDZ37022.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710865|emb|CAR35229.1| recF protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224470163|gb|ACN47993.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322716815|gb|EFZ08386.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|326625572|gb|EGE31917.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629713|gb|EGE36056.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 357

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 159/362 (43%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      + EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E  +A++  + +  Q +  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 TV 350


>gi|322830736|ref|YP_004210763.1| DNA replication and repair protein RecF [Rahnella sp. Y9602]
 gi|321165937|gb|ADW71636.1| DNA replication and repair protein RecF [Rahnella sp. Y9602]
          Length = 362

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 157/362 (43%), Gaps = 16/362 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEA+  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEAADLDPSPGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHDQ 65

Query: 70  PSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           P F    ARV +G +    I +    + D  VR   I+      V EL + L +  + P 
Sbjct: 66  PEFV-LHARVDDGGDRELSIGLSKSRQGDSKVR---IDGSDGHKVSELAQMLPMQLITPE 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
              + +G    RR F+D   F  DP       +  RL++ RN  L +     +   + + 
Sbjct: 122 GFTLLNGGPKYRRAFIDWGCFHHDPGFFIAWSNLRRLLKQRNAALRQ-VSRYAQIRAWDQ 180

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++  L  +I+  R    +A+++ I      +  P   LS + F  G +D+     + EY 
Sbjct: 181 ELIPLAGRISEWRAAYSDAIAADISATC-AQFLPEFALSFS-FQRG-WDK-----ETEYG 232

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           + L    + D     T  GPH++D  +   D        S G+ K+++  + LA    ++
Sbjct: 233 ELLERNFERDRALTYTASGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLT 291

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367
             +G   + LLD+ ++ LD D+R  L   +    +Q+F++  + + V D + E  K  R+
Sbjct: 292 RQSGRRCLYLLDDFASELDADRRRLLADRLKATQAQVFVSAISAEQVTDMMGEKGKMFRV 351

Query: 368 SN 369
             
Sbjct: 352 EQ 353


>gi|300719139|ref|YP_003743942.1| DNA replication and repair protein [Erwinia billingiae Eb661]
 gi|299064975|emb|CAX62095.1| DNA replication and repair protein [Erwinia billingiae Eb661]
          Length = 361

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 153/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R+EG E    + +      D  VR   I+      V EL + L +  + P  
Sbjct: 66  DAFV-LHGRIEGAEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR ++D   F  +P       +  RLM+ RN  L +         + + +
Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHNEPGFFTAWSNLRRLMKQRNAALRQ-VSRYQQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A++  I      +  P  KL+ + F  G +D+     + EY +
Sbjct: 181 LVPLAEQISRWRAAYSDAIAEDINATC-AQFLPEFKLTFS-FQRG-WDK-----ETEYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFERDRALTYTASGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
             G   + L+D+ ++ LDE +R  L   +    +Q+F++  + + VFD  +E  K   + 
Sbjct: 292 QNGRRCLYLIDDFASELDETRRQLLASRLKATHAQVFVSAISAEHVFDMTDEKGKMFHVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|319775075|ref|YP_004137563.1| DNA replication and repair protein RecF [Haemophilus influenzae
           F3047]
 gi|329123014|ref|ZP_08251585.1| recombination protein F [Haemophilus aegyptius ATCC 11116]
 gi|317449666|emb|CBY85872.1| DNA replication and repair protein RecF [Haemophilus influenzae
           F3047]
 gi|327471945|gb|EGF17385.1| recombination protein F [Haemophilus aegyptius ATCC 11116]
          Length = 359

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 163/367 (44%), Gaps = 17/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   ALS  I +  Q    P ++++++      F Q +    
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALSPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +Y + L    + D     T  GP ++D    +  + + +    S G+ K+++  + LA 
Sbjct: 228 ADYYEILQQNFERDRALNYTFAGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
              +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  
Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 345

Query: 363 KFMRISN 369
           K   + N
Sbjct: 346 KMFSVHN 352


>gi|312892157|ref|ZP_07751654.1| DNA replication and repair protein RecF [Mucilaginibacter paludis
           DSM 18603]
 gi|311295287|gb|EFQ72459.1| DNA replication and repair protein RecF [Mucilaginibacter paludis
           DSM 18603]
          Length = 366

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 159/361 (44%), Gaps = 42/361 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  F+NY    ++ +     F G+NG GKTN+L+A+ +LS  + +     +   +
Sbjct: 3   LKQLSLLNFKNYTQAEIILEPGVNAFAGNNGAGKTNLLDAVHYLSLCKSYFNPIDSQQIK 62

Query: 67  IGSPSFF--STFARVEGME----GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            G+  F     F++ +  E    GL     K   R+ +  +         R+ D    H+
Sbjct: 63  QGADFFMVNGVFSKDDKAEVIACGLKRNQKKQFKRNKKEYQ---------RLAD----HI 109

Query: 121 RISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--- 174
            +  LV   P    I    S ERR+F+D ++   D  +   +I + +++  RN LL    
Sbjct: 110 GLFPLVMISPYDISIIIEGSEERRKFIDNVISQTDNGYLDELIAYNKILLNRNALLKLIA 169

Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGF 231
             G +D       + Q+   G +I   R + +     +   + +   +    ++L+    
Sbjct: 170 DTGRYDPQMLEVYDEQLVLSGTRIFEKRKKFMEVFIGIFNRHYRFISDEAEMVELNYESQ 229

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           L          L  ++A+ L    + D    RT  G H+ DL       A+    GS G+
Sbjct: 230 L----------LTGDFAQLLKKSTERDRALERTTNGVHKDDLHFTIHGMAMK-KFGSQGQ 278

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTG 349
           QK  L+ + LA    ++   G+ P+LLLD+I   LDE++   L ++V+  D G Q+F+T 
Sbjct: 279 QKSFLIALKLAQYTFLNEQKGYKPLLLLDDIFDKLDENRTRKLMQMVSNNDFG-QVFITD 337

Query: 350 T 350
           T
Sbjct: 338 T 338


>gi|225020877|ref|ZP_03710069.1| hypothetical protein CORMATOL_00885 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946359|gb|EEG27568.1| hypothetical protein CORMATOL_00885 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 364

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 152/335 (45%), Gaps = 27/335 (8%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF-FSTFARVEGMEGLADI 88
           T+FVG NG GKTN++EAI +++     R A  A + R G P+   S  A  +  E  A +
Sbjct: 8   TLFVGRNGHGKTNLVEAIGYVAHLGSHRVAQDAPLVRHGQPNARVSATAVRDDRELTAHL 67

Query: 89  SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
            I     +  S+   ++N        EL   +R     P    +  G   ERRR+LD ++
Sbjct: 68  LINASGANQASINRTRLNS-----PRELLGVVRTVLFCPEDLALVRGEPAERRRYLDNII 122

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLT-------EGYF-DSSWCSSI---EAQMAELGVKI 197
               PR      D+E+++R R  LL         GY  D    +++   +AQ++  G ++
Sbjct: 123 ATRRPRLAGVKADYEKVLRQRTTLLKTSSAALRRGYSGDDGSLATLDVWDAQLSRQGAQM 182

Query: 198 NIARVEMINALSSLIMEY---VQKENFP-HIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
             AR  ++  L  L+ E    +  E+ P HI    T   D   D +   ++     +L  
Sbjct: 183 IAARRALVAELDPLVHEAYAGIAPESRPAHIAYEST-VPDVGEDPAL--IEAAMLAELGR 239

Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
            R  +    R+L+GPHR DL++   D        S GE   +++ + L   +L+    G 
Sbjct: 240 MRPKEIDRGRSLVGPHRDDLVITLGDVPAK-GFASHGETWSMVLALRLGEFQLL-RADGT 297

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            P+L+LD++ A LD  +R  L  +  D+  Q+ +T
Sbjct: 298 DPVLILDDVFAELDALRRERLVHLTQDV-EQVLIT 331


>gi|314922681|gb|EFS86512.1| recombination protein F [Propionibacterium acnes HL001PA1]
 gi|314982907|gb|EFT26999.1| recombination protein F [Propionibacterium acnes HL110PA3]
 gi|315091213|gb|EFT63189.1| recombination protein F [Propionibacterium acnes HL110PA4]
 gi|315094447|gb|EFT66423.1| recombination protein F [Propionibacterium acnes HL060PA1]
 gi|315105167|gb|EFT77143.1| recombination protein F [Propionibacterium acnes HL050PA2]
          Length = 401

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 169/369 (45%), Gaps = 28/369 (7%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVRADVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL        + 
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231
           G    +     + ++A +G ++  AR++ ++A+  LI     +E  P   L+   +    
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAIMPLI-STAYREIAPANDLTTASYKSTI 244

Query: 232 -LDGKF------DQSFCALKEEYAKKLFD---GRKMDSMSRR-TLIGPHRSDLIVDYCDK 280
            L+G +      + S    ++E A +  D    R+ D + R  TL+GP R D+I+ +  +
Sbjct: 245 DLEGLWSPQQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V  
Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362

Query: 341 IGSQIFMTG 349
              Q+ +T 
Sbjct: 363 -ADQVLVTA 370


>gi|283836133|ref|ZP_06355874.1| hypothetical protein CIT292_10554 [Citrobacter youngae ATCC 29220]
 gi|291068322|gb|EFE06431.1| DNA replication and repair protein RecF [Citrobacter youngae ATCC
           29220]
          Length = 357

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 157/362 (43%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            SF     R++G E    I +  +   D  VR   I+      V EL   + +  + P  
Sbjct: 66  ESFV-LHGRLQGEERETSIGLTKDKLGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    ++  + +  Q +  P   LS + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAQDMADTCQ-QFLPEFSLSFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 TV 350


>gi|262039510|ref|ZP_06012812.1| DNA replication and repair protein RecF [Leptotrichia goodfellowii
           F0264]
 gi|261746491|gb|EEY34028.1| DNA replication and repair protein RecF [Leptotrichia goodfellowii
           F0264]
          Length = 364

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 153/349 (43%), Gaps = 12/349 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+ S FR     +   D    +  G NG GKT+ +EA+ FL+ G+ FR     ++ R
Sbjct: 3   LKQLSYSNFRCLEDTKTELDRNFNLIYGKNGQGKTSFIEAVHFLATGKSFRTKKTKELFR 62

Query: 67  IGSPS--FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                   F  +      E +  I +  E +D        IN    + +D +   L I  
Sbjct: 63  YNKNRVIVFGKYINKNEEENILAIDVNEEKKD------FYINRNKNKYIDYVG-LLNIIS 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    I  G    RR F +  +      + + ++DFE++++ RN+L+ E        S
Sbjct: 116 FIPEDIEIIVGNPSIRRNFFNYEISQAKKDYLKSIVDFEKILKTRNKLIKEKKTREEIYS 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCA 242
               +  E G  I I R E I  +S L+    +K   P   +KL    FL     ++   
Sbjct: 176 IYNEKFMEEGTNIIIHRREFIKNISILLNLNYRKLFDPKSELKLKYDCFLGDIDKKTKEE 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +KE++++ +    + + +   +L GP + D I +   K    +  S GE+K ++  + ++
Sbjct: 236 IKEKFSENIKRKAEREKILGYSLTGPQKDDFIFELNGKNAK-SFSSQGEKKSIIFSLKVS 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
              ++       P+ ++D+I+++ DE ++ ++     +   Q F+T T+
Sbjct: 295 EIDMLVKEKNEYPLFIMDDIASYFDEVRKKSILDYFINKKIQCFITSTE 343


>gi|241889743|ref|ZP_04777041.1| DNA replication and repair protein RecF [Gemella haemolysans ATCC
           10379]
 gi|241863365|gb|EER67749.1| DNA replication and repair protein RecF [Gemella haemolysans ATCC
           10379]
          Length = 378

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 168/385 (43%), Gaps = 34/385 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK L +  FRNY S  +       + VG+N  GKTNI+E+I  L+ G+ +R  S ++ 
Sbjct: 1   MKIKSLKLLYFRNYLSTNIEVHPSLNVLVGNNANGKTNIIESIFCLALGKSYRTKSDSEC 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-VIRVVDELNKHLRI 122
              G + +  S        E   DI + +  +  +S +   I    +   V ELN    +
Sbjct: 61  IMFGETATAMSCIVNKNDRE--LDIMLGINNK-GKSAKIAGIKKTKLTDFVGELN----V 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------G 176
               P   +I  G    RR F++R  +     + +  + ++ L++ RN  L +       
Sbjct: 114 VLFSPEDLQIVKGSPALRREFMNREFYQFSRIYHKYYLMYQHLLKQRNSYLKDMRKNPKD 173

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL-----TGF 231
               ++  ++ +Q+ ++ + I   RV  +  +S L   Y    N  + + +L     +  
Sbjct: 174 EMSLAYLETLTSQLVKVALYITKERVSFVRDISKLT--YKNMLNISNGQETLKIKYKSSV 231

Query: 232 LDGK-----FDQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
           LD        D+SF    L +   KK FD    D M   T IGP   DL   Y +     
Sbjct: 232 LDALNIAEINDESFTEENLTKVMMKKSFD----DIMRGSTKIGPQHDDLEF-YINDLDAK 286

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
            + S G+Q+ +++ + LA    +   TG  P+LLLD++ + LD++++  L   + +    
Sbjct: 287 MYASQGQQRSIVLSLKLAEINFLKEKTGTYPVLLLDDVLSELDKNRQLKLLDAINENVQT 346

Query: 345 IFMTGTDKSVFDSLNETAKFMRISN 369
              T +   + + L + AK  +I +
Sbjct: 347 FITTPSISDIKEDLLKKAKVFKIED 371


>gi|282856280|ref|ZP_06265561.1| DNA replication and repair protein RecF [Pyramidobacter piscolens
           W5455]
 gi|282585857|gb|EFB91144.1| DNA replication and repair protein RecF [Pyramidobacter piscolens
           W5455]
          Length = 352

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 154/353 (43%), Gaps = 23/353 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I       FRN  +  + ++    +  G NG GKTNILEA+  ++    F  +  +D 
Sbjct: 1   MRIAQTRFRNFRNLENALIAWEPGLNLLTGANGAGKTNILEALHVVTGWGAFSGSKCSDT 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  S    S  A+  G E  A I   +  R       L+++  + R  D  N    +++
Sbjct: 61  VKWQSEGGASLAAQAAG-EREAIIEAVIMARAS-----LRLDGKLCRWGDLRNCVPSLTF 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L PS   +  G    RRRFLD +     P +  ++ ++ ++ + R  LL  G+       
Sbjct: 115 L-PSDMALIEGAPSVRRRFLDLLCALYFPLYAYKLSEYRKITQHRRHLLGLGHST----R 169

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPH-IKLSLTGFLDGKFDQSFC 241
             E  MA L   I   R+E+I AL     E+++K     P  I L+L     G  D    
Sbjct: 170 VTEETMANLSAWIWECRLEVIAALR----EHLEKWRGLLPRKIDLNLKRGGSGNADD--- 222

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            L E++ +      + +  S   L+GPHR DL++  C+  +     S G+++   + + +
Sbjct: 223 -LLEDFHRSCAILAERERASGLPLVGPHRDDLVIG-CEGRLASEVLSRGQRRRAALALVM 280

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
             A  +      +P+LL DE+++ LDE  R  L   +     Q+F    + ++
Sbjct: 281 GAASAVERRGRASPVLLFDEVASELDEAGRTVLMECLQHSRWQVFAATAESAL 333


>gi|332638149|ref|ZP_08417012.1| recombination protein F [Weissella cibaria KACC 11862]
          Length = 381

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 154/346 (44%), Gaps = 15/346 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI-G 68
           L ++ FRNY  L + F     +F+G N  GKTN+LEAI  L+  R  R  S  ++    G
Sbjct: 6   LKLNNFRNYQDLAVTFSPGVNVFLGPNAQGKTNLLEAIYVLALARSHRTTSDKELIGWDG 65

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
             +  S   R +   G   +S+   ++  ++    ++N +    +      L +    P 
Sbjct: 66  KEAMVSGVVRRQ--YGKVPLSLAFTSKGKKA----RMNHLDQAKLGTYIGQLNVILFAPE 119

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCS 184
              +  G    RR F+DR    + P++      ++ +++ RN+ L    ++   D  +  
Sbjct: 120 DLALVKGAPTIRRNFIDREFSQMSPKYLYIANQYKGVLKQRNQYLKQLQSKQAKDMLYLE 179

Query: 185 SIEAQMAELGVKINIARVEMINAL--SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            +  Q+     ++ + R+++I  L  ++  +     +    ++++    L+ +       
Sbjct: 180 VLTDQLTSFASELIVRRIQLIKKLGEAAAPIHADITQGGETLRIAYVSQLNEEELGDEQV 239

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +KE   K+    +  + M   TL+GPHR DL  D     +    GS G+Q+   + + LA
Sbjct: 240 IKEAMTKRFERLQSREVMMGTTLLGPHRDDLRFDVNGHDVA-TFGSQGQQRTTALAVKLA 298

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
              L+   TG  PILLLD++ + LD +++  L   + +   Q F+T
Sbjct: 299 EIDLMKQETGEYPILLLDDVLSELDTNRQTHLLTAMQN-KVQTFIT 343


>gi|206579462|ref|YP_002235888.1| DNA replication and repair protein RecF [Klebsiella pneumoniae 342]
 gi|290511691|ref|ZP_06551059.1| DNA replication and repair protein recF [Klebsiella sp. 1_1_55]
 gi|226737806|sp|B5XT53|RECF_KLEP3 RecName: Full=DNA replication and repair protein recF
 gi|206568520|gb|ACI10296.1| DNA replication and repair protein RecF [Klebsiella pneumoniae 342]
 gi|289775481|gb|EFD83481.1| DNA replication and repair protein recF [Klebsiella sp. 1_1_55]
          Length = 357

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 157/361 (43%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +        + +RL++ RN  L +     +     + +
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLRPWDLE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E   A+   + +  Q +  P   L+ + F  G   ++      +YA+
Sbjct: 181 LIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFS-FQRGWEKET------DYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    ++ 
Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  ++ +K  R+ 
Sbjct: 292 VSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 K 352


>gi|254994016|ref|ZP_05276206.1| recombination protein F [Listeria monocytogenes FSL J2-064]
          Length = 352

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 156/363 (42%), Gaps = 48/363 (13%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82
           L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +    A++EG 
Sbjct: 1   LEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFIM-----WEKEEAKMEGR 55

Query: 83  EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142
                 S+ LE    +  +  ++N +  + + +   +L +    P    +  G    RRR
Sbjct: 56  IAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVKGAPGIRRR 115

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQMAELGVKIN 198
           FL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q A++ + + 
Sbjct: 116 FLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQFADVAINLT 175

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL-FDG--- 254
             R + I  L +                     +  +  +    LK EY   +  +G   
Sbjct: 176 KRRADFIQKLEAY-----------------AAPIHHQISRGLETLKIEYKASITLNGDDP 218

Query: 255 --------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                   +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q+   + I 
Sbjct: 219 EVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQRTTALSIK 277

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  S  D  +E
Sbjct: 278 LAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTSTSGID--HE 334

Query: 361 TAK 363
           T K
Sbjct: 335 TLK 337


>gi|16272929|ref|NP_439154.1| recombination protein F [Haemophilus influenzae Rd KW20]
 gi|260580082|ref|ZP_05847912.1| recombination protein F [Haemophilus influenzae RdAW]
 gi|1172892|sp|P43767|RECF_HAEIN RecName: Full=DNA replication and repair protein recF
 gi|1574021|gb|AAC22653.1| DNA/ATP binding protein (recF) [Haemophilus influenzae Rd KW20]
 gi|260093366|gb|EEW77299.1| recombination protein F [Haemophilus influenzae RdAW]
          Length = 359

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 163/367 (44%), Gaps = 17/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    I ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGQIQESQHQWSIGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   ALS  I +  Q    P ++++++      F Q +    
Sbjct: 176 IWDVELAKLAHQVSEWRAEYAEALSPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +Y + L    + D     T  GP ++D    +  + + +    S G+ K+++  + LA 
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
              +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  
Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 345

Query: 363 KFMRISN 369
           K   + N
Sbjct: 346 KMFSVHN 352


>gi|82779229|ref|YP_405578.1| recombination protein F [Shigella dysenteriae Sd197]
 gi|309784250|ref|ZP_07678889.1| DNA replication and repair protein recF [Shigella dysenteriae 1617]
 gi|97180962|sp|Q329B8|RECF_SHIDS RecName: Full=DNA replication and repair protein recF
 gi|81243377|gb|ABB64087.1| ssDNA and dsDNA binding, ATP binding [Shigella dysenteriae Sd197]
 gi|308927757|gb|EFP73225.1| DNA replication and repair protein recF [Shigella dysenteriae 1617]
          Length = 357

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 159/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIETADLALSPGFNFLVGANGSGKTSMLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNESGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    +++ + +   K+  P   L+ + F  G   ++      E
Sbjct: 178 DKELILLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|157690802|ref|YP_001485264.1| recombination protein F [Bacillus pumilus SAFR-032]
 gi|166918720|sp|A8F8Y7|RECF_BACP2 RecName: Full=DNA replication and repair protein recF
 gi|157679560|gb|ABV60704.1| recombination protein F [Bacillus pumilus SAFR-032]
          Length = 370

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 160/358 (44%), Gaps = 29/358 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L ++ +RNY    L FD +  + +G+N  GKTN++EAI  LS  +  R ++  ++ R
Sbjct: 3   IQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   +A++EG     +  + ++    +  +  ++N +  + +      L      
Sbjct: 63  -----WDQDYAKIEGRVIKKNGPLPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDSSW 182
           P    +  G    RRRFLD  +  +   +   +  +++++  RN    +L T    D + 
Sbjct: 118 PEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQRNHYLKQLQTRKQTDQAM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALS----------SLIMEYVQKENFPHIKLSLTGFL 232
              +  Q+ +   K+   R+     L           S  +E +  +    I++S    L
Sbjct: 178 LEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYHTAIEVSEASDL 237

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
             K   S+    EE  +KL D R++D     TL GPHR DL+  + +      +GS G+Q
Sbjct: 238 -SKIKNSY----EESFQKLRD-REIDRGV--TLWGPHRDDLLF-FVNGRDVQTYGSQGQQ 288

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +   + + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T
Sbjct: 289 RTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTT 345


>gi|257783818|ref|YP_003179035.1| DNA replication and repair protein RecF [Atopobium parvulum DSM
           20469]
 gi|257472325|gb|ACV50444.1| DNA replication and repair protein RecF [Atopobium parvulum DSM
           20469]
          Length = 363

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 167/371 (45%), Gaps = 15/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K++ +++  FR +AS  +   AQ TIFVG N  GKTN +EA+  L+ G  FR+ + + +
Sbjct: 3   LKVEHVSLYNFRCFASKEIDLSAQTTIFVGKNAAGKTNTVEALQLLTAGYSFRKPTPSQL 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +       +       L +  I  E R     R    N    +  D     + I +
Sbjct: 63  LLTDTSEAKIEISLTGDGRKLENTCIITERR-----RQFSKNGKKCQAADISGTLMSILF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
               +  I  G S  R  F D      +  + +    + + +  RN+LL   + D +   
Sbjct: 118 NPDDLSMIKGGASYRREEF-DDFGRQANKSYFKVFSTYIKTVEQRNKLLKSDWPDENLLD 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLS-LTGFLDGKFDQSFCA 242
           + +  +A  G  +  AR+ +   L+    E Y +     H++++ ++   +   + S   
Sbjct: 177 AWDLSLARGGAILLHARIHLFERLAKKTCEIYQELSGGEHLEMNYISSIGEISLEASREE 236

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301
           + +++ + L + R  D   +++  GPHR D  V++  +     + GS G+ + V++ + +
Sbjct: 237 ISDQFLQALNEIRIDDIRRQQSTKGPHRDD--VEFLIEGKEARNFGSQGQIRTVVLALKM 294

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVF-DSLN 359
           A   L     G  P+LLLD++ + LDED+R A+      DI  Q  +T T+   F + + 
Sbjct: 295 AEVLLSEEILGEKPLLLLDDVMSELDEDRRKAIMEFAFHDI--QTVITTTNLGYFSEEIL 352

Query: 360 ETAKFMRISNH 370
           E A+ +R S+ 
Sbjct: 353 EKAQIVRFSDE 363


>gi|56415709|ref|YP_152784.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364637|ref|YP_002144274.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81678054|sp|Q5PKU8|RECF_SALPA RecName: Full=DNA replication and repair protein recF
 gi|226737832|sp|B5BIL2|RECF_SALPK RecName: Full=DNA replication and repair protein recF
 gi|56129966|gb|AAV79472.1| recF protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|197096114|emb|CAR61710.1| recF protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
          Length = 357

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 158/360 (43%), Gaps = 17/360 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      + EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEEREMSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEA 188
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++       + 
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQ--LRPWDK 179

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++  L  +I+  R E  +A++  + +  Q +  P   L+ + F  G   ++      +YA
Sbjct: 180 ELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------DYA 231

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
             L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    ++
Sbjct: 232 DVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367
             +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K   +
Sbjct: 291 RESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350


>gi|218283253|ref|ZP_03489314.1| hypothetical protein EUBIFOR_01903 [Eubacterium biforme DSM 3989]
 gi|218216008|gb|EEC89546.1| hypothetical protein EUBIFOR_01903 [Eubacterium biforme DSM 3989]
          Length = 363

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 23/345 (6%)

Query: 15  FRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73
           FRNY ++   F  +   F+ G N  GKTN++EAI FLS  R FR      +   G   F 
Sbjct: 11  FRNYETMSFSFVPKCIHFLYGKNAQGKTNLIEAIYFLSHLRSFRTNQMDSMIMHGCNEF- 69

Query: 74  STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133
              A VE      ++ + +   D +     +  + V +  D +     I    P    +F
Sbjct: 70  CVQAIVESNHRKEELKVIV---DHQKKHLFRFQNPVKKYSDFIGIENAI-LFCPDDLSLF 125

Query: 134 SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +     RRRF+D  +  +   +   +  +++L++ RN+ L +   D         QM E+
Sbjct: 126 TSSPKNRRRFIDMELMKLSRTYTSTLSSYQKLLKQRNQALKQSNIDECLVQIYLDQMIEV 185

Query: 194 GVKINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
              I   R E +N+L +   E       +KE    I      F+    D     +KE Y 
Sbjct: 186 QSVIIKQRNEFLNSLMNKARELYPFFSNEKE---EIGAKYMTFIPIDPDMK-SHMKEAY- 240

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
            K+F+  K      +TLIG HR D++ +  +  +     S G+++  ++ + L  A++I 
Sbjct: 241 DKVFEKEK---RYHQTLIGIHRDDILFELNENPVCEV-ASQGQKRSFVLALKLGLAQIIY 296

Query: 309 NTTGFAPILLLDEISAHLDE-DKRNALFRIVTDIGSQIFMTGTDK 352
             +G  PILLLD++ + LD+  KR  + ++  D+  QIF+T T++
Sbjct: 297 EKSGQYPILLLDDVFSELDDFRKRQLIEKLPRDM--QIFITTTER 339


>gi|299768253|ref|YP_003730279.1| recombination protein F [Acinetobacter sp. DR1]
 gi|298698341|gb|ADI88906.1| recombination protein F [Acinetobacter sp. DR1]
          Length = 360

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 158/360 (43%), Gaps = 49/360 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66
           LNI   RN  ++ L       IF G NG GKT+ILEAI  L+ GR FR     +Y     
Sbjct: 6   LNIERVRNLKTVALQGLQPFNIFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYAA 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F  +     GM+ LA              + +++N   +    +L K L +  L 
Sbjct: 66  EDAIVFAQSSTEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHLD 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P    I    +  RR+ LD ++F ++P        + R ++ RN LL T      +    
Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174

Query: 186 IEAQMAELGVKINIARVEMI--------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
               +++ G  ++  R+ ++        N LS L+         P +++ L      ++ 
Sbjct: 175 WNKMLSDYGEILHSQRLGIVEQWNVFFQNDLSQLL---------PDLEIEL------EYS 219

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD----YCDKAITIAHGSTGEQK 293
             F   ++   + L +  + D   R T  GPHR+DL +     + D  +     S G++K
Sbjct: 220 PGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADVVL-----SRGQKK 273

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           ++++ + L+   ++ + +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D +
Sbjct: 274 LLIIALKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332


>gi|195941091|ref|ZP_03086473.1| recombination protein F [Escherichia coli O157:H7 str. EC4024]
 gi|295095338|emb|CBK84428.1| DNA replication and repair protein RecF [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 357

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 156/359 (43%), Gaps = 15/359 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            SF     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  ESFV-LHGRLQGAERETAIGLTKDKQGDSKVR---IDGTDGHKVAELALLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +        + +RL++ RN  L +     +     + +
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQLRPWDME 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E    ++  + +   K+  P   L+ + F  G   ++      +YA+
Sbjct: 181 LIPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFS-FQRGWEKET------DYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    ++ 
Sbjct: 233 VLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367
            +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K   +
Sbjct: 292 ESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350


>gi|295425412|ref|ZP_06818110.1| recombination protein F [Lactobacillus amylolyticus DSM 11664]
 gi|295064914|gb|EFG55824.1| recombination protein F [Lactobacillus amylolyticus DSM 11664]
          Length = 375

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 155/353 (43%), Gaps = 26/353 (7%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  +RN   +   FD+   IF+G N  GKTN+LEAI FL+  R  R +S  ++   G+  
Sbjct: 8   VQNYRNLEKIDTNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTSSDRELIHFGND- 66

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
               +A + G    + + + L     +  + + IN V    + +    L      P    
Sbjct: 67  ----YANLMGHVHKSQVDLDLRVLITKKGKKVWINRVEQAKLSKYVGQLNAILFSPEDLE 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187
           +  G    RRRF+D+    I+  +      + +++  +N  L +       D  +   + 
Sbjct: 123 LIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLFQKNNYLKQLAKGQAKDQIFLDVLS 182

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE- 246
            Q+A +  ++   R + +  LS     +   + + HI L+ +  L   +  S   +  + 
Sbjct: 183 DQLAGIAAEVISRRFKFLRYLS-----HSASDAYEHISLA-SEKLAIAYHPSVSNITGDD 236

Query: 247 -----YAKKLFDGRKMDSMSRR---TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                Y K L + +K   M  R   TL GPHR D+      K   + + S G+Q+ + + 
Sbjct: 237 NTETIYHKVLNNFQKTKEMEIRKGTTLSGPHRDDIEFKLDGKDAHL-YASQGQQRSIALS 295

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           I LA  +L+ + T   P+LLLD++ + LD  ++ AL   +    +Q F+T TD
Sbjct: 296 IKLAEIQLVHHLTDEYPLLLLDDVMSELDHGRQRALLNYIHG-KTQTFITTTD 347


>gi|325270881|ref|ZP_08137468.1| recombination protein F [Prevotella multiformis DSM 16608]
 gi|324986678|gb|EGC18674.1| recombination protein F [Prevotella multiformis DSM 16608]
          Length = 368

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/378 (23%), Positives = 163/378 (43%), Gaps = 45/378 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N  +  L   A+   F+G NG GKTN+L+A+ +LS  +       ++V
Sbjct: 1   MQLDKLSIINYKNIQAATLNLSARLNCFIGRNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R  S  F     +    G +G     +K  T+     +  + N    + + +    + +
Sbjct: 61  IRHDSDYFVLEGDYTTDAGEQGQVYCGMKRGTK-----KHFKWNRKEYKRLSQHIGKVPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
            ++ P+   +  G S ERRR +D ++   D  +   +  + + ++ RN LL  EG  D +
Sbjct: 116 IFVSPADAALIEGGSEERRRLMDVVISQYDTPYIEALGRYNKALQQRNSLLKQEGEPDPT 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
               +E QMAE G  +   R   +  L+ +                       +  Q+ C
Sbjct: 176 LMELLEMQMAEHGETLYRKRKAFVQELTPVFQ---------------------RIYQTIC 214

Query: 242 ALKE----EYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHGS 288
             +E    EY      G  +D + R          +L G H+ DL++      +    GS
Sbjct: 215 CNREQVSLEYVSHCQRGSLLDVIQRDRTKDRIMGFSLHGTHKDDLVMKLGGYPMK-REGS 273

Query: 289 TGEQKVVLVGIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIF 346
            G+ K  ++ + LA    +  T+G   P+LLLD+I   LD  +   + R+V+ D   QIF
Sbjct: 274 QGQNKTYVLALKLAQFDFLHRTSGNNTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFGQIF 333

Query: 347 MTGTDKSVFDSLNETAKF 364
           +T T++   D + + + F
Sbjct: 334 ITDTNRDHLDRILQGSGF 351


>gi|194016619|ref|ZP_03055233.1| DNA replication and repair protein RecF [Bacillus pumilus ATCC
           7061]
 gi|194012092|gb|EDW21660.1| DNA replication and repair protein RecF [Bacillus pumilus ATCC
           7061]
          Length = 370

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 160/358 (44%), Gaps = 29/358 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L ++ +RNY    L FD +  + +G+N  GKTN++EAI  LS  +  R ++  ++ R
Sbjct: 3   IQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                +   +A++EG     +  + ++    +  +  ++N +  + +      L      
Sbjct: 63  -----WDQDYAKIEGRVIKKNGPLPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----RLLTEGYFDSSW 182
           P    +  G    RRRFLD  +  +   +   +  +++++  RN    +L T    D + 
Sbjct: 118 PEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQRNHYLKQLQTRKQKDQAM 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALS----------SLIMEYVQKENFPHIKLSLTGFL 232
              +  Q+ +   K+   R+     L           S  +E +  +    I++S    L
Sbjct: 178 LEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYHTAIEVSEASDL 237

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
             K   S+    EE  +KL D R++D     TL GPHR DL+  + +      +GS G+Q
Sbjct: 238 -SKIKNSY----EESFQKLRD-REIDRGV--TLWGPHRDDLLF-FVNGRDVQTYGSQGQQ 288

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +   + + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T
Sbjct: 289 RTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTT 345


>gi|311742166|ref|ZP_07715976.1| recombination protein F [Aeromicrobium marinum DSM 15272]
 gi|311314659|gb|EFQ84566.1| recombination protein F [Aeromicrobium marinum DSM 15272]
          Length = 373

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 164/359 (45%), Gaps = 23/359 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FR+Y  L L   A    FVG NG GKTN++EA+ +L+     R A+ A +
Sbjct: 1   MHVARLALHDFRSYTELDLELSAGPVAFVGANGQGKTNLVEAVDYLARLDSHRVAADAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+        R E +       +++E    RS R  ++N   +    ++   LR   
Sbjct: 61  VRAGAE---RAVVRAEVVREDRRALLEVEITPGRSNRA-RVNRGDLPRARDIVGILRTVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDSS 181
             P    +  G   +RRRFLD ++    PR      D++R+++ RN LL  G     D S
Sbjct: 117 FSPEDLALVKGDPSDRRRFLDALLVMRLPRLAGVKADYDRVLKQRNALLKSGRNRQVDIS 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIME---------YVQKENFPHIKLSLTGFL 232
                + ++A LG ++ + R+ +++ L   + +            + +   +  S T  +
Sbjct: 177 TLDIWDDKLATLGAELLVHRLTLLDDLGPHLAQAYREVATLAAADRRDVTAVYRSATDGV 236

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGE 291
            G  D     ++E   + + + R+ D + R  +L+GPHR ++++   D      + S GE
Sbjct: 237 TGTRD--VAEIREALLRAVAE-RRRDELDRGISLVGPHRDEVVLAVGDLPAK-GYASHGE 292

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              + + + LA   L+ +     P+L+LD++ A LD  +R+ L  +V     Q+ +T  
Sbjct: 293 SWSLALALRLASFELLRSEDD-DPVLILDDVFAELDAGRRDHLAALVGS-AEQVLVTAA 349


>gi|305666506|ref|YP_003862793.1| DNA replication and repair protein RecF [Maribacter sp. HTCC2170]
 gi|88708773|gb|EAR01008.1| DNA replication and repair protein RecF, ABC family ATPase
           [Maribacter sp. HTCC2170]
          Length = 359

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 160/353 (45%), Gaps = 26/353 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYADVT 65
           +K L++  ++N+ S    FD++   FVG NGVGKTN L+AI  LS G+G F   +  ++ 
Sbjct: 3   LKKLSLINYKNFDSQTFEFDSKTNCFVGPNGVGKTNALDAIYHLSFGKGYFNPVATQNIK 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                 FF      E  +    I   L+    R ++  +I     +  + L+ H+ +  L
Sbjct: 63  H--EEDFFVVDGEFEKFDRKEKIVCSLK----RGMK--KIIKRNGKPYERLSDHIGLLPL 114

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYF 178
           V   P+   + +  S  RR+F+D ++   D  + + +I + +++  RN LL        F
Sbjct: 115 VIISPADRDLITEGSDTRRKFIDGVISQSDKEYLQILIKYNKVLVQRNSLLKYFVANQTF 174

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D+S  S  + Q+   G +I   R++ +     +  E     +  + +++L+   D K  +
Sbjct: 175 DASTLSVYDEQLHNYGSEIFKKRLDFVATFIPIFKEQYAAISGGNEEVTLS--YDSKLHE 232

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +      +    L    + D M + T +G H+ DL        I    GS G+QK  L+ 
Sbjct: 233 N------DLLTLLATNVEKDRMLQYTSVGIHKDDLSFQIAGHPIK-KFGSQGQQKSFLIA 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGT 350
           +  A    I       PILLLD+I   LDE++   +  +V +    QIF++ T
Sbjct: 286 LKFAQFHFIKKQAKATPILLLDDIFDKLDENRVAQIVGMVDNENFGQIFISDT 338


>gi|320157814|ref|YP_004190193.1| DNA recombination and repair protein RecF [Vibrio vulnificus
           MO6-24/O]
 gi|319933126|gb|ADV87990.1| DNA recombination and repair protein RecF [Vibrio vulnificus
           MO6-24/O]
          Length = 359

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 161/365 (44%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +         +G NG GKT++LEAI  L  GR F+ A    V +   
Sbjct: 6   LIIQQFRNIKACDIALSPGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSALTGRVIQNEC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D +   ++I     + + +L + L +  + P
Sbjct: 66  DQLFVHGRFLNSDQFE----LPIGINKQRDGTTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +     RR F+D  VF  +P        F+RL + RN LL   + Y + S+   
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKSAKSYQELSYWDK 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             A++AEL   I+  R + +  + S   +  Q E  P   + L  +   + +  +  + E
Sbjct: 181 EMARLAEL---ISQWRADYVAQMQSKAEQLCQ-EFLPEFHIQLKYYRGWEKETPYQQILE 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  ++       D     T+ GP+++DL +   +  +     S G+ K+++  + LA  +
Sbjct: 237 ENFER-------DQTLGYTVSGPNKADLRIKVNNTPVEDVL-SRGQLKLMVCALRLAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   + L+D+ ++ LD  +R  L   +   G+Q+F++  T+  + D  +++ + 
Sbjct: 289 HLTEKTGKQCVYLIDDFASELDSQRRKRLADCLKQTGAQVFVSSITENQISDMRDDSGRL 348

Query: 365 MRISN 369
             +  
Sbjct: 349 FHVEQ 353


>gi|167548875|ref|ZP_02342634.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205325712|gb|EDZ13551.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 357

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 157/360 (43%), Gaps = 17/360 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      + EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEA 188
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++       + 
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQ--LRPWDK 179

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++  L  +I+  R E  +A++  + +  Q +  P        FL   F + +   + +YA
Sbjct: 180 ELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEF------FLTFSFQRGW-EKETDYA 231

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
             L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    ++
Sbjct: 232 DVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367
             +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K   +
Sbjct: 291 RESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350


>gi|152972607|ref|YP_001337753.1| recombination protein F [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|330005215|ref|ZP_08305174.1| DNA replication and repair protein RecF [Klebsiella sp. MS 92-3]
 gi|166220712|sp|A6TG02|RECF_KLEP7 RecName: Full=DNA replication and repair protein recF
 gi|150957456|gb|ABR79486.1| recombination protein F [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|328536347|gb|EGF62709.1| DNA replication and repair protein RecF [Klebsiella sp. MS 92-3]
          Length = 357

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 157/361 (43%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  DAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +        + +RL++ RN  L +     +     + +
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLRPWDLE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E   A+   + +  Q +  P   L+ + F  G   ++      +YA+
Sbjct: 181 LIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFS-FQRGWEKET------DYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    ++ 
Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  ++ +K  R+ 
Sbjct: 292 VSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 K 352


>gi|256826463|ref|YP_003150422.1| recF protein [Cryptobacterium curtum DSM 15641]
 gi|256582606|gb|ACU93740.1| recF protein [Cryptobacterium curtum DSM 15641]
          Length = 378

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 165/377 (43%), Gaps = 18/377 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  FRN+    L      TI  G N  GKT+++EAI  +S  + FR +     
Sbjct: 11  LRLTNLVLRNFRNHQEFSLKGLQGITILAGPNATGKTSVVEAIQLISALKSFRASQIGRA 70

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  +  S  A +E      D+ +++E       R  ++N    R  D L        
Sbjct: 71  IRWGQTAA-SVIATIESDHRQLDLQLRIE----EGKRSYRLNGKARRARD-LRGLFPAVT 124

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            VP    +  G S  RR  LD +   I         D+ +L+R +N+ L +   D+    
Sbjct: 125 FVPDDLGLAKGPSSARRGALDDLGAQISKNFAMVQSDYTKLVRQKNQALRDEASDTV-ID 183

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCA 242
           SI+  +  +GV+I   R  MI  L      Y ++  +      +      + +    +  
Sbjct: 184 SIDEVLTLVGVQILSHRSVMIKRLLPYFQLYYERIAQANETADIQYIPCWNEENQTQWTF 243

Query: 243 LKEE----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            +EE    +   L   R  + + R++++GPH +D +V   +        S G+Q+ +++ 
Sbjct: 244 EREECLAIFTSTLQQARLQERLRRKSVVGPH-ADKVVFLINGHDAAHFASQGQQRSLVLA 302

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
             LA A +I  T    PILLLD++ + LD  +R+    ++ +   QIF+T T+   F D 
Sbjct: 303 YKLAEAAVIEETLNQRPILLLDDVMSELDHQRRDQFMSMIEE-DIQIFITTTNLEYFTDE 361

Query: 358 LNETA--KFMRISNHQA 372
           + E A  +++   N++A
Sbjct: 362 IKEKALIQYLGGDNNEA 378


>gi|308234057|ref|ZP_07664794.1| DNA replication and repair protein RecF [Atopobium vaginae DSM
           15829]
 gi|328943454|ref|ZP_08240919.1| recombination protein F [Atopobium vaginae DSM 15829]
 gi|327491423|gb|EGF23197.1| recombination protein F [Atopobium vaginae DSM 15829]
          Length = 382

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 158/372 (42%), Gaps = 41/372 (11%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT--RI 67
           L  + +RN+  LR+    + T+  G N VGKTN +EA+  ++ G  FR+     +     
Sbjct: 8   LTCTNWRNFQHLRISLGDKTTVLHGSNAVGKTNTIEAVQMITTGTSFRKPLLTQMIYHNE 67

Query: 68  GSPSFFSTFA-RVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    + +   +  +E   +IS   +T  ++D+      +  V+  V            
Sbjct: 68  NAARLCAVYEDELHSVELACNISTHSKTYLKNDKKCSVSTLCSVMPSV------------ 115

Query: 125 LVPSMDRIFSGLSMERRRF-LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           L    D +F   +   RR  +D         +R+ +  F R +  RN +L     DS   
Sbjct: 116 LFSPDDLLFVKQTARYRRSEIDGFGILAHKGYRKLIKTFSRALEQRNNILKLPLSDSDIL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------------KENFPHIKLSLTGF 231
            +    +A     +  AR+++IN L S   E               K + P IK  L   
Sbjct: 176 HAWSVSLAHGSASVVAARLKLINHLYSKACEVYHTISPAEQLEIKYKSSIPLIK-DLEHK 234

Query: 232 LDGKF---DQSFCAL-KEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKAIT 283
           ++  +    QS  +L KE+  +   D    ++ + + R+ TLIGP R D I  Y +    
Sbjct: 235 VEEPYMYTPQSLSSLSKEDLVQSYLDAFSQKEQEELRRQVTLIGPQRDD-IEFYINGIPA 293

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
             + S G+Q+ +++   LA    I   TG  PILLLD++ + LDE +R A+   +   G 
Sbjct: 294 RTYASQGQQRSIVLAWKLAEVLFIKELTGQNPILLLDDVMSELDETRRLAIMEFIQQ-GI 352

Query: 344 QIFMTGTDKSVF 355
           Q  +T T+ S F
Sbjct: 353 QTIITTTNLSYF 364


>gi|37678197|ref|NP_932806.1| recombination protein F [Vibrio vulnificus YJ016]
 gi|51316312|sp|Q7MQJ5|RECF_VIBVY RecName: Full=DNA replication and repair protein recF
 gi|37196936|dbj|BAC92777.1| Recombinational DNA repair ATPase [Vibrio vulnificus YJ016]
          Length = 359

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 161/365 (44%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +         +G NG GKT++LEAI  L  GR F+ A    V +   
Sbjct: 6   LIIQQFRNIKACDIALSPGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSALTGRVIQNEC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D +   ++I     + + +L + L +  + P
Sbjct: 66  DQLFVHGRFLNSDQFE----LPIGINKQRDGTTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +     RR F+D  VF  +P        F+RL + RN LL   + Y + S+   
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKSAKSYQELSYWDK 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             A++AEL   I+  R + +  + S   +  Q E  P   + L  +   + +  +  + E
Sbjct: 181 EMARLAEL---ISQWRADYVAQMQSKAEQLCQ-EFLPEFHIQLKYYRGWEKETPYQQILE 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  ++       D     T+ GP+++DL +   +  +     S G+ K+++  + LA  +
Sbjct: 237 ENFER-------DQTLGYTVSGPNKADLRIKVNNTPVEDVL-SRGQLKLMVCALRLAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   + L+D+ ++ LD  +R  L   +   G+Q+F++  T+  + D  +++ + 
Sbjct: 289 HLTEKTGKQCVYLIDDFASELDSQRRKRLADCLKQTGAQVFVSSITENQISDMRDDSGRL 348

Query: 365 MRISN 369
             +  
Sbjct: 349 FNVEQ 353


>gi|237729022|ref|ZP_04559503.1| recombination protein F [Citrobacter sp. 30_2]
 gi|226909644|gb|EEH95562.1| recombination protein F [Citrobacter sp. 30_2]
          Length = 357

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 157/362 (43%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            SF     R++G E    I +  +   D  VR   I+      V EL   + +  + P  
Sbjct: 66  ESFV-LHGRLQGEERETSIGLTKDKLGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEVGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    ++  + +  Q +  P   LS + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSAGIAQDMADTCQ-QFLPEFSLSFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 TV 350


>gi|161616953|ref|YP_001590918.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|168464834|ref|ZP_02698726.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|189039639|sp|A9MX74|RECF_SALPB RecName: Full=DNA replication and repair protein recF
 gi|161366317|gb|ABX70085.1| hypothetical protein SPAB_04774 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195632488|gb|EDX50972.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 357

 Score = 86.3 bits (212), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 159/362 (43%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      + EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEVGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E  +A++  + +  Q +  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 TV 350


>gi|328471240|gb|EGF42142.1| recombination protein F [Vibrio parahaemolyticus 10329]
          Length = 359

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 161/365 (44%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V +   
Sbjct: 6   LIIQQFRNIKACDIQLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNEC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW--CSS 185
               + +     RR F+D  VF  +P        F+RL + RN LL      SS+   S 
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTA---SSYRELSY 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + +MA L   I+  R   I  + + + E + +   P  ++ L  +     D  +    +
Sbjct: 178 WDQEMARLAENISQWRSLYIEQMKT-VAETICQTFLPEFEIQLKYYRGWDKDTPY----Q 232

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  +K F+    D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 233 EILEKNFE---RDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L++  K 
Sbjct: 289 HLTAMTGKQCIYLIDDFASELDSQRRKRLAACLKETGAQVFVSSITENQIADMLDDNGKL 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|268593490|ref|ZP_06127711.1| DNA replication and repair protein RecF [Providencia rettgeri DSM
           1131]
 gi|291310912|gb|EFE51365.1| DNA replication and repair protein RecF [Providencia rettgeri DSM
           1131]
          Length = 364

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 158/362 (43%), Gaps = 18/362 (4%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I +FRN  +  L         +G NG GKT+ILEAI  L  GR FR      V R     
Sbjct: 8   IRDFRNIENADLSLANGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQANRVIRHEQEQ 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
           F          E   D+S+ L    D   + ++I+      + EL K L +  + P    
Sbjct: 68  FILHGKLSHLDEQRNDLSLGLSKNRDGDSK-VRIDGTDGHKIAELAKLLPMQLITPEGFT 126

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSIEA 188
           + +G    RR F+D   F  DP       D +RL++ RN   R +T       W    + 
Sbjct: 127 LLNGGPKYRRAFIDWGCFHNDPLFFSVWSDLKRLLKQRNAALRQVTRYEQIRHW----DK 182

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           Q+A L  +I+  R   I  ++  I +  Q +  P   LS++ F  G +D+       +Y+
Sbjct: 183 QLAPLSEQISQWRHNYIAGIAENIEQTCQ-QFLPEFSLSVS-FQRG-WDKEI-----DYS 234

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           ++L    + D     T  GPH++DL +      +     S G+ K+++  + LA     +
Sbjct: 235 EQLERQFERDRALTYTASGPHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQGEFFT 293

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367
           + +G   + LLD+ ++ LD  +R  L   +    +Q+F++  T + V D ++  +K   +
Sbjct: 294 HQSGQRCLYLLDDFASELDAGRRQLLAARLKATQAQVFVSAITPEQVNDMIDANSKMFSV 353

Query: 368 SN 369
            +
Sbjct: 354 EH 355


>gi|163787893|ref|ZP_02182339.1| DNA replication and repair protein RecF, ABC family ATPase
           [Flavobacteriales bacterium ALC-1]
 gi|159876213|gb|EDP70271.1| DNA replication and repair protein RecF, ABC family ATPase
           [Flavobacteriales bacterium ALC-1]
          Length = 359

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 163/363 (44%), Gaps = 52/363 (14%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYADVTRIG 68
           L++  ++N+ S    FDA+   FVG NGVGKTN L+AI  L+ G+  F   +  ++    
Sbjct: 6   LSLVNYKNFESQVFDFDAKINCFVGANGVGKTNALDAIYHLAFGKSYFNPIALQNINH-- 63

Query: 69  SPSFF---STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +  FF     F + E +E +  +S+K   +     + ++ N    +  ++ ++H+    L
Sbjct: 64  NAEFFVVDGNFTKNERVEKII-VSLKRGQK-----KIIKRNG---KAYEKFSEHIGFIPL 114

Query: 126 V---PS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGY 177
           V   P+  D I  G S  RR+F+D ++   D  +   +I + +++  RN LL        
Sbjct: 115 VIISPADRDLIIEG-SDTRRKFIDSVISQSDKTYLIELISYNKVLSQRNALLKYFALNNT 173

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
           F+    +    Q+   G +I   R   +     +      KE +  I             
Sbjct: 174 FNRDTLTIYNEQLHTYGTEIFKKRDAFLKIFIPIF-----KERYEAIS------------ 216

Query: 238 QSFCALKEEYAKKLFDGRKMDSMS---------RRTLIGPHRSDLIVDYCDKAITIAHGS 288
           QS  ++   Y   LF+G+  D ++         + T +G H+ DL+    D       GS
Sbjct: 217 QSKESIDLNYKSDLFEGKLEDLLNNNINKDKTLQYTSVGTHKDDLMF-LIDSFPIKKFGS 275

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFM 347
            G+QK  L+ + LA    I   +G +PILLLD+I   LDE++   +  +V D    QIF+
Sbjct: 276 QGQQKSFLIALKLAQFDFIKQQSGVSPILLLDDIFDKLDENRVAQIISLVDDEHFGQIFI 335

Query: 348 TGT 350
           + T
Sbjct: 336 SDT 338


>gi|260654351|ref|ZP_05859841.1| putative DNA replication and repair protein RecF [Jonquetella
           anthropi E3_33 E1]
 gi|260630984|gb|EEX49178.1| putative DNA replication and repair protein RecF [Jonquetella
           anthropi E3_33 E1]
          Length = 351

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 153/353 (43%), Gaps = 19/353 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L    FRN A+ ++ F ++  +  G+NG GKTN LEA++ L     F    ++++
Sbjct: 1   MRVVGLRTRRFRNLAAQKVSFSSEMNLITGENGSGKTNFLEALNCLCGWGPFSAGRWSEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           T       F      +G  G   + +   +R    +   +     +R+       L    
Sbjct: 61  TCWEENGAFELVGSFDGESG-GTVQVLCASRPSLRLDGDRATWTDVRLFAPCLSFL---- 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P+   +  G  + RRRFLD     + P + RR+ D+ RL+R +  LL  G        
Sbjct: 116 --PAHMALIEGGPVVRRRFLDVGTALLYPLYARRLSDWRRLVRHKRYLLRLGKPG----D 169

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL-TGFLDGKFDQSFCAL 243
             +  M  L   + + R E + AL   +       + P +++ L  G     FD      
Sbjct: 170 VADRIMKPLAGWLWLKREEFVGALQRELDAQADLLSCP-VQIGLHRGGGGACFDP----- 223

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E++A  L      +  S   L+GPHR DL +   ++   I + S G+++   + + LA 
Sbjct: 224 EEDFAAGLERLGPAERKSGLPLVGPHRDDLTLTVSERR-AIDYFSRGQRRRAALALILAA 282

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
              + +  G +PILL+DE+++ LDE  R  + + +   G Q+F    +    D
Sbjct: 283 GGAVKSQLGRSPILLIDEVASELDELGRQKVVQALGQSGCQVFAATAEPQSLD 335


>gi|317046241|ref|YP_004113889.1| DNA replication and repair protein RecF [Pantoea sp. At-9b]
 gi|316947858|gb|ADU67333.1| DNA replication and repair protein RecF [Pantoea sp. At-9b]
          Length = 361

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 157/361 (43%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEQADLSLAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P+F     R+EG E   ++++ L T++      ++I+      V EL + L +  + P  
Sbjct: 66  PAFV-LHGRIEGSE--RELAVGL-TKNRAGESKVRIDGSDGHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR ++D   F   P       +  RL++ RN  L +     S     + +
Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHAAPGFFNAWSNLRRLLKQRNAALRQ-VTRYSQIRPWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E  +A+ S I      +  P  +L+ + F  G   +S      +Y +
Sbjct: 181 LVPLAEQISAWRAEYSDAICSEITATC-AQFLPEFELAFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++D  +      +     S G+ K+++  + LA    ++ 
Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEYLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAKFMRIS 368
           ++G   + L+D+ ++ LD+ +R  L   +    +Q+F++    + V D  +E  K  R+ 
Sbjct: 292 SSGRRCLYLIDDFASELDDVRRRLLAERLKATQAQVFVSAIGVEHVIDMSDEKGKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|283480417|emb|CAY76333.1| DNA replication and repair protein recF [Erwinia pyrifoliae DSM
           12163]
          Length = 397

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 151/361 (41%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 42  LLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEQ 101

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R+ G E    + +      D  VR   I+      V EL + L +  + P  
Sbjct: 102 DAFV-LHGRIAGAERETSVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 157

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR ++D   F  +P       +  RL++ RN  L +         + + +
Sbjct: 158 FTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIRAWDQE 216

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +A L  +I+  R     A+++ I      +  P  +LS + F  G   +S      +YA 
Sbjct: 217 LAPLAEQISQWRAAYSRAIAADINATC-AQFLPEFQLSFS-FQRGWDKES------DYAG 268

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++D  +      +     S G+ K+++  + LA    ++ 
Sbjct: 269 LLERNFERDRALTYTASGPHKADFRIRAQGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 327

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
             G   + L+D+ ++ LDE +R+ L   +    +Q+F++    + VFD  +E  K   + 
Sbjct: 328 QNGRRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMADEKGKMFHVE 387

Query: 369 N 369
            
Sbjct: 388 Q 388


>gi|28896787|ref|NP_796392.1| recombination protein F [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839066|ref|ZP_01991733.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           AQ3810]
 gi|260363486|ref|ZP_05776319.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           K5030]
 gi|260876545|ref|ZP_05888900.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           AN-5034]
 gi|260897306|ref|ZP_05905802.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           Peru-466]
 gi|260901414|ref|ZP_05909809.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           AQ4037]
 gi|32129958|sp|Q87TQ5|RECF_VIBPA RecName: Full=DNA replication and repair protein recF
 gi|28804995|dbj|BAC58276.1| RecF protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747449|gb|EDM58403.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           AQ3810]
 gi|308087832|gb|EFO37527.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           Peru-466]
 gi|308090410|gb|EFO40105.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           AN-5034]
 gi|308107203|gb|EFO44743.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           AQ4037]
 gi|308113567|gb|EFO51107.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           K5030]
          Length = 359

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 161/365 (44%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V +   
Sbjct: 6   LIIQQFRNIKACDIQLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNEC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW--CSS 185
               + +     RR F+D  VF  +P        F+RL + RN LL      SS+   S 
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTA---SSYRELSY 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + +MA L   I+  R   I  + + + E + +   P  ++ L  +     D  +    +
Sbjct: 178 WDQEMARLAENISQWRSLYIEQMKT-VAETICQTFLPEFEIQLKYYRGWDKDTPY----Q 232

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  +K F+    D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 233 EILEKNFE---RDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L++  K 
Sbjct: 289 HLTAMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITENQIADMLDDNGKL 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|282853042|ref|ZP_06262379.1| DNA replication and repair protein RecF [Propionibacterium acnes
           J139]
 gi|282582495|gb|EFB87875.1| DNA replication and repair protein RecF [Propionibacterium acnes
           J139]
 gi|327328942|gb|EGE70702.1| RecF protein [Propionibacterium acnes HL103PA1]
          Length = 394

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 167/366 (45%), Gaps = 28/366 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   + R
Sbjct: 3   VERLELVDFRSYVRADVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           +G+           G +    + +++E    R+ R       + R  D L   LR     
Sbjct: 63  LGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTVVFS 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEGYF 178
           P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL        + G  
Sbjct: 122 PNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSAGAE 181

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-----LD 233
             +     + ++A +G ++  AR++ ++A+  LI     +E  P   L+   +     L+
Sbjct: 182 IGATMDIWDNELATIGAELLSARLDTLSAIMPLI-STAYREIAPANDLTTASYKSTIDLE 240

Query: 234 GKF------DQSFCALKEEYAKKLFD---GRKMDSMSRR-TLIGPHRSDLIVDYCDKAIT 283
           G +      + S    ++E A +  D    R+ D + R  TL+GP R D+I+ +  +   
Sbjct: 241 GLWSPQQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGEMPA 299

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
             + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V     
Sbjct: 300 KGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ-AD 357

Query: 344 QIFMTG 349
           Q+ +T 
Sbjct: 358 QVLVTA 363


>gi|293611382|ref|ZP_06693678.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826254|gb|EFF84623.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123496|gb|ADY83019.1| DNA replication, recombinaison and repair protein [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 360

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 159/360 (44%), Gaps = 49/360 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66
           LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     +Y   + 
Sbjct: 6   LNIERVRNLKTVALQGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYSA 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F  +     GM+ LA              + +++N   +    +L K L +  + 
Sbjct: 66  EDAIVFAQSATEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHID 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P    I    +  RR+ LD ++F ++P        + R ++ RN LL T      +    
Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNISLADLEP 174

Query: 186 IEAQMAELGVKINIARVEMI--------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
               +++ G  ++  R+ ++        N LS L+         P +++ L      ++ 
Sbjct: 175 WNKMLSDYGEILHSQRLSIVEQWNVFFQNDLSQLL---------PDLEIEL------EYS 219

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD----YCDKAITIAHGSTGEQK 293
             F   ++   + L +  + D   R T  GPHR+DL +     + D  +     S G++K
Sbjct: 220 PGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADVVL-----SRGQKK 273

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           ++++ + L+   ++ + +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D +
Sbjct: 274 LLIIALKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332


>gi|269925147|ref|YP_003321770.1| DNA replication and repair protein RecF [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269788807|gb|ACZ40948.1| DNA replication and repair protein RecF [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 386

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 165/348 (47%), Gaps = 31/348 (8%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRAS------YADVTRIGSPSFFSTFARVEGMEG 84
           + +G N  GKT +LEAI  L+  +  R  S      +   +  G P+F    A V     
Sbjct: 7   LVLGPNASGKTTLLEAIYLLATTKSHRAGSDRELINWNTESEEGVPAFARVAAEVRRRSP 66

Query: 85  L-ADISI-KLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR 141
           +  +I+I K  T    +VR  +++N V  R +D + +   + +    +D I    S+ RR
Sbjct: 67  IQVEITILKESTAQGENVRKRIRVNGVNKRAIDLIGQVNVVMFGPQDLDLIVGAPSL-RR 125

Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC---SSIEAQMA----EL- 193
           R+L+  +  +D ++ R +  +ER++  RN L+ +   D ++     SI  Q A    EL 
Sbjct: 126 RYLNITISQLDHQYVRTLQTYERVVLQRNTLI-KALSDRAFKLRDESINDQFAYWDNELV 184

Query: 194 --GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL---KEE-- 246
             G  +   R+E+++ ++ L      K      +LS+  +    FD     L   +EE  
Sbjct: 185 NQGSYLLARRLEILSRMNELASMVHSKLTGSSQELSI-AYKSTLFDSLPLQLDNPREEEI 243

Query: 247 ---YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              Y KK+ D R+ +     TL+GPHR D I           +GS G+Q+ V++ I LA 
Sbjct: 244 RDLYIKKIHDLRREELRRGMTLVGPHRDD-ISFLVGGVDVGVYGSRGQQRSVILAIKLAE 302

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             L+ + TG  PILLLD++ + LD ++R  L + V  +  Q  +T TD
Sbjct: 303 VDLMKSITGDLPILLLDDVVSELDPERRRYLLQNVLQLSQQALVTTTD 350


>gi|226942173|ref|YP_002797246.1| recombination protein F [Azotobacter vinelandii DJ]
 gi|259563355|sp|C1DFU4|RECF_AZOVD RecName: Full=DNA replication and repair protein recF
 gi|226717100|gb|ACO76271.1| DNA replication and repair protein ,RecF [Azotobacter vinelandii
           DJ]
          Length = 365

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 151/348 (43%), Gaps = 25/348 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           + ++  RN   + L    +  I  G NG GKT++LEAI  L   R FR    + V +   
Sbjct: 6   VTVTAVRNLHPVTLNPSPRINILYGPNGSGKTSLLEAIHLLGLARSFRSQRLSPVIQHEQ 65

Query: 70  PSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           P+  + F +V   +G + ++ +      +  +R   I+   +R   +L + L +  + P 
Sbjct: 66  PA-CTVFGQVLWNDGRVRNLGVARNRLGELQIR---IDGQNVRSAAQLAESLPLQLINPD 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR+FLD  VF ++ R        +  +R RN  L  G  D    ++ + 
Sbjct: 122 SFRLLEGAPKVRRQFLDWGVFHVEQRFLPAWHRLQTALRQRNSWLRHGRIDPVSQAAWDR 181

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++     +I+  R   I  L   + E V  E      L+L+ +     ++S   L E  A
Sbjct: 182 ELCLASEEIDSYRRSYIQVLKP-VFESVLHELVELDGLTLSYYRGWDRERS---LGEVLA 237

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-----STGEQKVVLVGIFLAH 303
             L      D     T  GP R+DL      +    AH      S G+QK+V+  + +A 
Sbjct: 238 ASL----PRDQQLGHTQAGPQRADL------RLRLAAHNAADLLSRGQQKLVVCALKIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             L+        I L+D++ + LDE  R AL R++ ++  Q+F+T  D
Sbjct: 288 GHLVDRARREC-IYLVDDLPSELDEQHRRALCRLLEELHCQVFITCVD 334


>gi|296100374|ref|YP_003610520.1| recombination protein F [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295054833|gb|ADF59571.1| recombination protein F [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 357

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 156/359 (43%), Gaps = 15/359 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            SF     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  ESFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELALLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +        + +RL++ RN  L +     +     + +
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQLRPWDME 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E    ++  + +   K+  P   L+ + F  G   ++      +YA+
Sbjct: 181 LIPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFS-FQRGWEKET------DYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    ++ 
Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367
            +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K   +
Sbjct: 292 ESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVMDMSDENSKMFTV 350


>gi|254521265|ref|ZP_05133320.1| DNA replication, recombinaison and repair protein [Stenotrophomonas
           sp. SKA14]
 gi|219718856|gb|EED37381.1| DNA replication, recombinaison and repair protein [Stenotrophomonas
           sp. SKA14]
          Length = 364

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 151/361 (41%), Gaps = 9/361 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + + R +++  L+      +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MQIRRLALHQLRRFSAADLLPQPGLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  +        E          K   R        +++   +  +  L   L +  
Sbjct: 61  VRQGQEALEIFVEWDEQRANHPPHRRKAGLRHSGQDWKGRLDGEDVAQLGNLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G   S    
Sbjct: 121 FEPGSHALVSGGGEPRRRFLDWGLFHVEPDFLSLWRRYSRALKQRNALLKQG-GPSRMLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R   +  L    +           +L + G    +    +   +
Sbjct: 180 TWDHELAEAGEPLTSRRQHYLERLQQRTVSLAATLA---PQLGIQGL---ELSPGWRRHE 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T +GPHR+D  VD+       A  S G+ K+  +   LA A
Sbjct: 234 LPLADALLLARERDRQAGYTSVGPHRADWSVDFHSIPGRDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
              +   G  P++ LD++++ LD   +  + + + D  +QIF+T T+  S    L +  +
Sbjct: 293 EDYAEQRGEWPVIALDDLASELDRTHQARVLQRLLDGPAQIFITATETPSALQDLADITR 352

Query: 364 F 364
           F
Sbjct: 353 F 353


>gi|314965766|gb|EFT09865.1| recombination protein F [Propionibacterium acnes HL082PA2]
          Length = 401

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 168/369 (45%), Gaps = 28/369 (7%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVRADVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL        + 
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKFLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231
           G    +     + ++A +G ++  AR++ ++A+  LI      E  P   L+   +    
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAIMPLI-STAYHEIAPANDLTTASYKSTI 244

Query: 232 -LDGKF------DQSFCALKEEYAKKLFD---GRKMDSMSRR-TLIGPHRSDLIVDYCDK 280
            L+G +      + S    ++E A +  D    R+ D + R  TL+GP R D+I+ +  +
Sbjct: 245 DLEGLWSPQQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V  
Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362

Query: 341 IGSQIFMTG 349
              Q+ +T 
Sbjct: 363 -ADQVLVTA 370


>gi|148927269|ref|ZP_01810839.1| DNA replication and repair protein RecF [candidate division TM7
           genomosp. GTL1]
 gi|147887328|gb|EDK72782.1| DNA replication and repair protein RecF [candidate division TM7
           genomosp. GTL1]
          Length = 351

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 152/343 (44%), Gaps = 13/343 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FR+Y    +      TI  G NG GKTN+LEA+  L+ G  F RAS  ++ +IG 
Sbjct: 5   LRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSF-RASDQELGQIGM 63

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             ++   AR+   E     SI  E       +   ++ V  + +   +K L +    P  
Sbjct: 64  -DWWRLDARLVANESR---SILFEAEKTTGRKTFILDGVKKQRLTYQHK-LPVVLFEPGD 118

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            R+  G    RR F+D ++  ++P +   +  ++R+++ RN LL   +         +  
Sbjct: 119 LRLLHGSPARRRLFIDTLISQLEPLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVWDVA 178

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           ++E G +I   R +    L++ + E  +     H K  ++  L   F +   ++++    
Sbjct: 179 LSEYGARIVAERQKYSALLNASLRE--RYRAIAHTKDIVS--LAYSFQEGAESVQQAMVS 234

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHARLIS 308
            L      D     T +GPHR DLI    D +A +IA  S GE +   + +      ++ 
Sbjct: 235 ALHAHHVRDKALGYTTVGPHRHDLIFSMNDVEATSIA--SRGETRXXXLALKFIEVEMLR 292

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
                 P+LLLD++ + LD  +R AL  + +   + I  T  D
Sbjct: 293 VYRDQPPLLLLDDVFSELDSTRRMALVEVGSSTQTVITTTNAD 335


>gi|77163565|ref|YP_342090.1| RecF protein [Nitrosococcus oceani ATCC 19707]
 gi|97180823|sp|Q3JF36|RECF_NITOC RecName: Full=DNA replication and repair protein recF
 gi|76881879|gb|ABA56560.1| DNA replication and repair protein RecF [Nitrosococcus oceani ATCC
           19707]
          Length = 363

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 140/350 (40%), Gaps = 23/350 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L+I  FRN   + L       I  G N  GKT+ LEAI  L  GR FR       
Sbjct: 2   MHITHLDIRNFRNLKHIELHPSKGVNILSGANSSGKTSFLEAIYLLGLGRSFRTVQLISA 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  S     A+V+ + G     ++      R+    +IN   ++   +L   L + +
Sbjct: 62  IQAGMESL-RVVAKVKQVGGSHTAGVEFGPAGFRA----RINKDTVKKRSQLATQLPLLY 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +      +  G    RR++LD  +F ++P        ++R ++ RN +L       SW  
Sbjct: 117 MSSYSHVVLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHVLR--VHKPSWQQ 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            I A   +L         E I +L   I+  +Q      +    T              K
Sbjct: 175 EINAWNKKLST-----YGEQITSLREAILFKLQDS----VSQLFTALAHQPISPVTMEFK 225

Query: 245 EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           + +A+       L +    D  +  T  GPHR++ +  Y D        S G+QKV    
Sbjct: 226 QGWARTVRLEEILNESLNYDRAAGYTRYGPHRAE-VAFYVDGKDVREILSRGQQKVFCYS 284

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           + L+ A L+  T     I L+D+ ++ LD D R  L  ++  +G Q+F T
Sbjct: 285 LALSQANLLYRTKEQNCIFLIDDFTSELDADHRKRLLTLLNKLGMQVFAT 334


>gi|261341640|ref|ZP_05969498.1| hypothetical protein ENTCAN_08108 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315997|gb|EFC54935.1| DNA replication and repair protein RecF [Enterobacter cancerogenus
           ATCC 35316]
          Length = 357

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 155/359 (43%), Gaps = 15/359 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            SF     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  ESFV-LHGRLQGAERETAIGLSKDKQGDSKVR---IDGTDGHKVAELALLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +        + +RL++ RN  L +     +     + +
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQLRPWDLE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E    ++  + +   K+  P   L+ + F  G   ++      +YA 
Sbjct: 181 LIPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFS-FQRGWEKET------DYAD 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    ++ 
Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367
            +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K   +
Sbjct: 292 ESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350


>gi|226226221|ref|YP_002760327.1| DNA replication and repair protein RecF [Gemmatimonas aurantiaca
           T-27]
 gi|226089412|dbj|BAH37857.1| DNA replication and repair protein RecF [Gemmatimonas aurantiaca
           T-27]
          Length = 376

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 155/353 (43%), Gaps = 20/353 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + E+RN+ SL L       + +G+NG GKTN+LEA+++L   R FR A  ADV R G+
Sbjct: 5   LAVREYRNFHSLDLEVPTGGLVVIGENGHGKTNLLEAVAYLGLLRSFRGARDADVIRFGA 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P+F    A +        +S+  E R  +  R         R+   L     + +    +
Sbjct: 65  PAFH-VRATLHAPAAWHTVSVGYE-RSSKRKRATLDGVEQPRLTSALGALPSVEFSPADV 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPR-------HRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             + SG   ERRR+LD M+    P        +R  ++    +++   R         + 
Sbjct: 123 ALVASG-PGERRRYLDVMLALSSPAYLVALQGYRSALLRRNAVLKAAQRSAVRAQEQEAR 181

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYV----QKENFPHIKLSLTGFLDGKFDQ 238
            S  E  +AE G  I  AR   + A +    E      +++      +S+ G  D + D 
Sbjct: 182 VSVWEPALAEHGGVIVAARHAFVRAQAGYYAELCAAIGERQEALLRYVSVGG--DTRSDA 239

Query: 239 SFCALKEEYA-KKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
               L ++ A  + F  ++   + R  TL+GP R DL +    + +    GS G+Q+   
Sbjct: 240 LTDPLMQQDALTRAFTQQRSAELRRGVTLVGPQRDDLQLTLGGRELRT-FGSAGQQRSAA 298

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMT 348
           + + L     + +  G++P+LLLD+  A LD  +   +  ++   G SQ+ + 
Sbjct: 299 IALRLLELITLRDALGYSPLLLLDDPFAELDLGRAARVLDLLDAAGASQVLLA 351


>gi|283787600|ref|YP_003367465.1| DNA replication and repair protein [Citrobacter rodentium ICC168]
 gi|282951054|emb|CBG90732.1| DNA replication and repair protein [Citrobacter rodentium ICC168]
          Length = 357

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 156/360 (43%), Gaps = 17/360 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            SF     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  ESFV-LHGRLQGDERETSIGLSKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEA 188
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++       + 
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQ--LRPWDK 179

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++  L  +I+  R      ++  + +  Q +  P   LS + F  G   ++      +YA
Sbjct: 180 ELIPLAEQISAWRAAYSAGIAQDMADTCQ-QFLPEFTLSFS-FQRGWEKET------DYA 231

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           + L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    ++
Sbjct: 232 EVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEYLT 290

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367
             +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K   +
Sbjct: 291 RESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDENSKMFNV 350


>gi|254435256|ref|ZP_05048763.1| hypothetical protein NOC27_2319 [Nitrosococcus oceani AFC27]
 gi|207088367|gb|EDZ65639.1| hypothetical protein NOC27_2319 [Nitrosococcus oceani AFC27]
          Length = 362

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 140/350 (40%), Gaps = 23/350 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L+I  FRN   + L       I  G N  GKT+ LEAI  L  GR FR       
Sbjct: 1   MHITHLDIRNFRNLKHIELHPSKGVNILSGANSSGKTSFLEAIYLLGLGRSFRTVQLISA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  S     A+V+ + G     ++      R+    +IN   ++   +L   L + +
Sbjct: 61  IQAGMESL-RVVAKVKQVGGSHTAGVEFGPAGFRA----RINKDTVKKRSQLATQLPLLY 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +      +  G    RR++LD  +F ++P        ++R ++ RN +L       SW  
Sbjct: 116 MSSYSHVVLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHVLR--VHKPSWQQ 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            I A   +L         E I +L   I+  +Q      +    T              K
Sbjct: 174 EINAWNKKLST-----YGEQITSLREAILFKLQDS----VSQLFTALAHQPISPVTMEFK 224

Query: 245 EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           + +A+       L +    D  +  T  GPHR++ +  Y D        S G+QKV    
Sbjct: 225 QGWARTVRLEEILNESLNYDRAAGYTRYGPHRAE-VAFYVDGKDVREILSRGQQKVFCYS 283

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           + L+ A L+  T     I L+D+ ++ LD D R  L  ++  +G Q+F T
Sbjct: 284 LALSQANLLYRTKEQNCIFLIDDFTSELDADHRKRLLTLLNKLGMQVFAT 333


>gi|315037234|ref|YP_004030802.1| recombination protein F [Lactobacillus amylovorus GRL 1112]
 gi|325955725|ref|YP_004286335.1| recombination protein F [Lactobacillus acidophilus 30SC]
 gi|312275367|gb|ADQ58007.1| recombination protein F [Lactobacillus amylovorus GRL 1112]
 gi|325332290|gb|ADZ06198.1| recombination protein F [Lactobacillus acidophilus 30SC]
 gi|327182553|gb|AEA31000.1| recombination protein F [Lactobacillus amylovorus GRL 1118]
          Length = 375

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 153/353 (43%), Gaps = 26/353 (7%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FRN   L + FD    IF+G N  GKTN+LEAI FL+  R  R  +  D   IG   
Sbjct: 8   VQNFRNLKKLDVDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNN--DKELIG--- 62

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
           F   +A + G    + + + L     +  + + IN V    + +    L      P    
Sbjct: 63  FDGEYANLLGHVQKSQVDLTLRVLITKKGKKVWINRVEQSKLSKYVGQLNAILFSPEDLE 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187
           +  G    RRRF+D+    I+P +      + +++  +N  L +       D  +   + 
Sbjct: 123 LIKGAPALRRRFMDQEFGQINPEYLYFASKYRQVLMQKNNYLKQLSKGKAKDQVFLDVLS 182

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE- 246
            Q+A +  ++   R + +  LS     +   + + HI L     L   +  S   ++ + 
Sbjct: 183 DQLAGIAAEVISRRFKFLRYLS-----HYASDAYAHISLGGEK-LAIAYHPSVSDIEADD 236

Query: 247 -----YAKKL--FDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                Y K L  F+  K   + + T   GPHR D+      K   + + S G+Q+ + + 
Sbjct: 237 NTETIYQKILASFERNKATEIRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIALS 295

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           + LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD
Sbjct: 296 VKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHG-KTQTFITTTD 347


>gi|300871522|ref|YP_003786395.1| DNA replication and repair protein RecF [Brachyspira pilosicoli
           95/1000]
 gi|300689223|gb|ADK31894.1| DNA replication and repair protein, RecF [Brachyspira pilosicoli
           95/1000]
          Length = 355

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 159/361 (44%), Gaps = 18/361 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRNY      F     I  G NG GKTNILEAI  L  G  FR     ++ +
Sbjct: 3   LKELTLRSFRNYNENTFEFSKHINILYGINGCGKTNILEAIYILGNGISFRTRLDRELIK 62

Query: 67  IGSPSFFSTFARVEGM--EGLADISIKLETRDDRSVRCLQINDVVIRVVDEL-NKHLRIS 123
            G+ ++F     + G+  E   +    +E    +  + + IN   I     L  K L + 
Sbjct: 63  YGNDNYF-----LRGIFKEDDLNYDTNIEIVYQKKTKKVFINKKEITSRKNLIGKILYVI 117

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +L    D + S   + RR + + ++ +I   +   +I + +L++ RN  LT    D+   
Sbjct: 118 FLPNDTDMVTSEPKL-RRDYFNMLISSISNEYLLSLIKYNKLLKMRNIYLTTSPNDAHIY 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           +   A+++      N     ++    + I   + K + P+    L+   D        A 
Sbjct: 177 NEDIAKLSLYIANENKKYSMLLEEKMNEIYRTIFKNDNPYKIKYLSTIED-------IAN 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + EY KKL    K     R T  G HR++    Y D +++    S GE++++ + + LA 
Sbjct: 230 ENEYIKKLESTIKEQIKMRTTYFGIHRAEYQFFYKD-SLSRKFSSQGEKRMLTLIMKLAS 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +++      +PILL+D+    LD  KR ++   +  +G Q+F+T T+K       E+  
Sbjct: 289 EKILYEYRKKSPILLIDDAMLELDNIKRESILEYIKTLG-QVFITVTEKEKLSKFEESKV 347

Query: 364 F 364
           F
Sbjct: 348 F 348


>gi|312137518|ref|YP_004004854.1| DNA replication and repair protein recf [Rhodococcus equi 103S]
 gi|311886857|emb|CBH46165.1| DNA replication and repair protein RecF [Rhodococcus equi 103S]
          Length = 408

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 162/353 (45%), Gaps = 35/353 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++  ++ +FR++ ++ +  +   T+FVG NG GKTN+LEA+ +LS     R +S A + R
Sbjct: 3   VRKFSLRDFRSWDAVTVDLEPGCTVFVGRNGHGKTNLLEALGYLSTLSSHRVSSDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+P ++        G E    + I +E  D R+ R  +IN    R   E+   L+    
Sbjct: 63  AGAPQAYAGALIANHGRE----LGIDIEINDGRANRA-RINQSPARRPREIVGILQTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGYF 178
            P    +  G   +RRRFLD ++ A  PR      D+++++R R+ LL         G  
Sbjct: 118 APEDLSLVRGDPGDRRRFLDELLTARRPRMAGVRADYDKVLRQRSALLKTAGGALRRGAR 177

Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSS-LIMEY--VQKENFP---HIKL 226
            S   S++      +  +A  G ++  +R+ +++ L+  L+  Y  +  E+ P     K 
Sbjct: 178 SSDGASALATLDIWDGHLAAHGAQLLASRLRLVHDLAPHLVASYRSLAPESRPASVRYKS 237

Query: 227 SLTGFLDGKF-------DQSFCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
           SL   L  +        D     L E  +  +L + R+ +      L+GPHR DL +   
Sbjct: 238 SLGTSLPPELLDPTREPDPDDVELLEVSFLNELSEMRQREIERGVCLVGPHRDDLELILG 297

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           D+       S GE     + + L    L+ +  G  P+L+LD++ A LD  +R
Sbjct: 298 DQPAK-GFASHGESWSFALSMRLGAFFLLRDD-GSDPVLMLDDVFAELDRKRR 348


>gi|312865752|ref|ZP_07725974.1| DNA replication and repair protein RecF [Streptococcus downei
           F0415]
 gi|311098627|gb|EFQ56849.1| DNA replication and repair protein RecF [Streptococcus downei
           F0415]
          Length = 270

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 121/269 (44%), Gaps = 15/269 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           +++  FRNYA +   F +   IF+G N  GKTN LEAI FL+  R  R       TR+  
Sbjct: 6   ISLKNFRNYAQMTAEFSSGLNIFLGQNAQGKTNFLEAIYFLALTRSHR-------TRLDK 58

Query: 70  P--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              +F +    V G+       + LE       R  ++N +    + +   H+ +    P
Sbjct: 59  ELINFQAKDLSVSGLLQRRGGKLPLEINLSDKGRTTKVNYLKQTKLSDYIGHMTVVLFAP 118

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSI 186
              ++  G    RR+FLD  +  I P +   + ++  +++ RN  L T    D  + + I
Sbjct: 119 EDLQLVKGAPGLRRKFLDIDLGQIKPVYLADLSNYNHVLKQRNAYLKTAQTIDKDYLAVI 178

Query: 187 EAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + Q+A+ G ++   R + +  L+       +V      H+K+S    +  KF  S   +K
Sbjct: 179 DEQLADFGSRVMEHRYQFVQDLTQEADKHHHVISNQLEHLKISYQSSV--KFQDS-ANIK 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
           + + ++L      DS  + T +GPHR DL
Sbjct: 236 QNFQEQLAKSFSRDSFKKNTGVGPHRDDL 264


>gi|150005151|ref|YP_001299895.1| DNA replication and repair protein RecF [Bacteroides vulgatus ATCC
           8482]
 gi|254883286|ref|ZP_05255996.1| DNA replication and repair protein recF [Bacteroides sp. 4_3_47FAA]
 gi|294778962|ref|ZP_06744378.1| DNA replication and repair protein RecF [Bacteroides vulgatus
           PC510]
 gi|319642660|ref|ZP_07997306.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_40A]
 gi|166220701|sp|A6L3K9|RECF_BACV8 RecName: Full=DNA replication and repair protein recF
 gi|149933575|gb|ABR40273.1| DNA replication and repair protein RecF [Bacteroides vulgatus ATCC
           8482]
 gi|254836079|gb|EET16388.1| DNA replication and repair protein recF [Bacteroides sp. 4_3_47FAA]
 gi|294447271|gb|EFG15855.1| DNA replication and repair protein RecF [Bacteroides vulgatus
           PC510]
 gi|317385748|gb|EFV66681.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_40A]
          Length = 371

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 160/366 (43%), Gaps = 37/366 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N     L F  +   F+G NG+GKTN+L+A+ +LS  +       +   R
Sbjct: 3   LKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                FF      E  +G  + +   L+ R  +  +  +      +  + L+ H+    L
Sbjct: 63  -HEGEFFVIQGFYETDQGEPEEVYCGLKRRQKKQFKRNK------KEYNRLSDHIGFIPL 115

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
           V   P+   + +G S  RRRF+D ++   D  +   +I + + +  RN LL +E  FD  
Sbjct: 116 VMVSPADAELIAGGSDGRRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEFDEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                E  MA  G  +   R E I        +  S I +  +K N  +   +++G L  
Sbjct: 176 LMLVWEEMMASAGEVVFKKRSEFIAEFIPTFQSFYSYISQDKEKVNLAYESHAMSGGL-- 233

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                   +KE         R+ D +   +L G H+ DLI+   D  I    GS G+ K 
Sbjct: 234 -----LDIIKE--------SRRRDRVMGYSLKGVHKDDLIMQLGDFPIK-REGSQGQNKT 279

Query: 295 VLVGIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK 352
            L+ + LA    +  T G   P+LLLD+I   LD  +   + ++V  D   QIF+T T++
Sbjct: 280 YLIALKLAQFDFLKKTGGNTTPLLLLDDIFDKLDAFRVEQIVKLVAGDRFGQIFITDTNR 339

Query: 353 SVFDSL 358
              D +
Sbjct: 340 DHLDKI 345


>gi|254483301|ref|ZP_05096532.1| RecF/RecN/SMC N terminal domain, putative [marine gamma
           proteobacterium HTCC2148]
 gi|214036396|gb|EEB77072.1| RecF/RecN/SMC N terminal domain, putative [marine gamma
           proteobacterium HTCC2148]
          Length = 373

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 163/348 (46%), Gaps = 15/348 (4%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M++   +  L I+  RN   +RL    +  +F G NG GKT++LEAI  L   R FR + 
Sbjct: 1   MSSDSSLSRLQINHVRNLLGVRLEGIQRVNVFFGHNGSGKTSVLEAIHLLGMARSFRGSI 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            + VT        + F  +E        ++ ++      V+ ++I    +R V EL ++L
Sbjct: 61  KSLVTH--GQDHCTVFGALEPR----STTLGVQRGVTGEVK-IKIAGSPVRTVAELVEYL 113

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +  +      + +G    RR++LD  VF ++ R   +   F+R ++ RN+LL      +
Sbjct: 114 PVQVINADSFNLLTGSPGARRQYLDWGVFHVEHRFFDQWQRFQRGIKQRNKLLRRVKMPT 173

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              +    ++A+ G  ++  R    N L+   +E + +     +  SLTG L+ ++ + +
Sbjct: 174 EELAVWTRELAQSGEVLSGYRESYFNRLTPRFIEIMAQ-----LAPSLTG-LELRYRKGW 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              + EY + L +    D     T +GP R D+ V   +  +     S G+QK+V+ G+ 
Sbjct: 228 DK-QLEYQQALENSTMTDIEQGYTHVGPQRGDVRV-LTEGHVAADTLSRGQQKLVVCGLK 285

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           LA  +L++         L+D++ + LD    + +  ++  + +Q+F+T
Sbjct: 286 LAQGQLMAEMGRGNCTYLVDDLPSELDLQHSSLVCGLLAGMNAQVFIT 333


>gi|238787826|ref|ZP_04631623.1| DNA replication and repair protein recF [Yersinia frederiksenii
           ATCC 33641]
 gi|238724169|gb|EEQ15812.1| DNA replication and repair protein recF [Yersinia frederiksenii
           ATCC 33641]
          Length = 361

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 155/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     RV+  E  + + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  AEFV-LHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +   + + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I         P   LS + F  G   +S      +Y +
Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T +GPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+ 
Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVTDMVGEKGKMFRVE 351

Query: 369 N 369
           +
Sbjct: 352 H 352


>gi|238754006|ref|ZP_04615365.1| DNA replication and repair protein recF [Yersinia ruckeri ATCC
           29473]
 gi|238707758|gb|EEQ00117.1| DNA replication and repair protein recF [Yersinia ruckeri ATCC
           29473]
          Length = 361

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 154/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLAPAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHDC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P F     RV+  E    + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  PEFV-LHGRVDSGERELSVGLSKSRQGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +     + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRPWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I         P   LS + F  G   +S      +Y +
Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T +GPH++D  +      +     S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+ 
Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351

Query: 369 N 369
           +
Sbjct: 352 H 352


>gi|262046285|ref|ZP_06019248.1| recombination protein F [Lactobacillus crispatus MV-3A-US]
 gi|260573615|gb|EEX30172.1| recombination protein F [Lactobacillus crispatus MV-3A-US]
          Length = 375

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 148/356 (41%), Gaps = 32/356 (8%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FRN   L + FD+   IF+G N  GKTN+LEAI FL+  R  R  +  D+   G   
Sbjct: 8   VQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDLIGFGGE- 66

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
               F  + G    + + + L     +  + + IN V    + +    L      P    
Sbjct: 67  ----FTNLLGHVHKSQVDLDLRVLITQKGKKVWINRVEQAKLSKYVGQLNAILFSPEDLE 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187
           +  G    RRRF+D+    I+  +      + +++  +N  L +       D  +   + 
Sbjct: 123 LIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQVFLDVLS 182

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--------LDGKFDQS 239
            Q+A +  ++   R + +  LS     +   + + HI L    F         D + D S
Sbjct: 183 DQLAGIAAEVVFRRFKFLKYLS-----HYASDAYAHISLGSEQFSIAYHPSVADIQADDS 237

Query: 240 FCALKEEYAKKLFDGRKMDSMSR----RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
                EE  +K+      +  S      T  GPHR D+     D      + S G+Q+ +
Sbjct: 238 ----TEEIYQKILASYARNKASEIRKGTTTSGPHRDDIEFK-LDGQNAHLYASQGQQRSI 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + + LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD
Sbjct: 293 ALSVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHG-KTQTFITTTD 347


>gi|15826868|ref|NP_301131.1| recombination protein F [Mycobacterium leprae TN]
 gi|221229346|ref|YP_002502762.1| recombination protein F [Mycobacterium leprae Br4923]
 gi|13432238|sp|P46391|RECF_MYCLE RecName: Full=DNA replication and repair protein recF
 gi|254790484|sp|B8ZTP0|RECF_MYCLB RecName: Full=DNA replication and repair protein recF
 gi|13092415|emb|CAC29511.1| putative DNA replication and SOS induction protein [Mycobacterium
           leprae]
 gi|219932453|emb|CAR70096.1| putative DNA replication and SOS induction protein [Mycobacterium
           leprae Br4923]
          Length = 385

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 160/362 (44%), Gaps = 32/362 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++   + +FR++  + L  +   T+F G NG GKTN++EA+ + +     R  +   + R
Sbjct: 3   VRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPLIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    EG E     +I LE    R+ R  ++N  ++R + E+   LR    
Sbjct: 63  AGTIRAIVSTIVVNEGRE----CAIDLEIAAGRANRA-RLNRSLVRGMREVVGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----------E 175
            P    +  G    RRR+LD +     P       D+++++R R  LL           +
Sbjct: 118 APEDLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRTALLKSLAAARYRSDQ 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLD 233
           G  D+      + ++AE G ++  AR++++N L+  + +  Q          +S    LD
Sbjct: 178 GVLDT--LDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQLLAPGSRTASISYRASLD 235

Query: 234 -------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                  G  D++   L+ +    L   R ++      L+GPHR +L +   D+      
Sbjct: 236 IGGIAGVGSSDRAL--LQADLLAGLSTRRNVELERGICLVGPHRDELELRLGDQPAK-GF 292

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE   + + + LA   L+    G  P+LLLD++ A LD  +  AL   V +   Q+ 
Sbjct: 293 ASHGESWSLAIALRLAAYELL-RADGNEPVLLLDDVFAELDAARCRALA-TVAESAEQVL 350

Query: 347 MT 348
           +T
Sbjct: 351 VT 352


>gi|259910293|ref|YP_002650649.1| recombination protein F [Erwinia pyrifoliae Ep1/96]
 gi|224965915|emb|CAX57448.1| DNA replication and repair protein RecF [Erwinia pyrifoliae Ep1/96]
          Length = 361

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 151/361 (41%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R+ G E    + +      D  VR   I+      V EL + L +  + P  
Sbjct: 66  DAFV-LHGRIAGAERETSVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR ++D   F  +P       +  RL++ RN  L +         + + +
Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +A L  +I+  R     A+++ I      +  P  +LS + F  G   +S      +YA 
Sbjct: 181 LAPLAEQISQWRAAYSRAIAADINATC-AQFLPEFQLSFS-FQRGWDKES------DYAG 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++D  +      +     S G+ K+++  + LA    ++ 
Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAQGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
             G   + L+D+ ++ LDE +R+ L   +    +Q+F++    + VFD  +E  K   + 
Sbjct: 292 QNGRRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMADEKGKMFHVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|259563367|sp|A3M0Q6|RECF_ACIBT RecName: Full=DNA replication and repair protein recF
 gi|193075923|gb|ABO10500.2| DNA replication recombination and repair protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 360

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 158/360 (43%), Gaps = 49/360 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66
           LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     +Y     
Sbjct: 6   LNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYEA 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F  +     GM+ LA              + +++N   +    +L K L +  + 
Sbjct: 66  DDAIVFAQSATEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHID 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P    I    +  RR+ LD ++F ++P        + R ++ RN LL T      +    
Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174

Query: 186 IEAQMAELGVKINIARVEMI--------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
               +++ G  ++  R+ ++        N LS L+         P +++ L      ++ 
Sbjct: 175 WNKMLSDYGEILHSQRLSIVEQWNVYFQNDLSQLL---------PDLEIEL------EYS 219

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD----YCDKAITIAHGSTGEQK 293
             F   ++   + L +  + D   R T  GPHR+DL +     + D  +     S G++K
Sbjct: 220 PGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-----SRGQKK 273

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           ++++ + L+   ++ + +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D +
Sbjct: 274 LLIIALKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332


>gi|312134085|ref|YP_004001423.1| DNA replication and repair protein recf [Caldicellulosiruptor
           owensensis OL]
 gi|311774136|gb|ADQ03623.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           owensensis OL]
          Length = 353

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 147/349 (42%), Gaps = 27/349 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + I  FR+Y      F  +  + VG+N  GKT++LEA+ F   G+ F+     D+  
Sbjct: 3   IKGIYIENFRSYKQSFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFKSRD-IDLIN 61

Query: 67  IGSPSF-FSTFARVEGMEGLADISIK--LETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             S  F     A VEG+E      +   LE R       + IND  +  + EL    +  
Sbjct: 62  FDSQYFKLEMVAEVEGVEYAVGCYVDRILEKR-------IMINDKKVNRLSELITLFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    +       RRRFLD  V  + P   +   +++R +  RN  L + Y      
Sbjct: 115 FFEPDTTELVKHQPKLRRRFLDMEVAKLYPYMTKVYQEYQRALLSRNAFL-KSYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA- 242
              + Q++ LG  I   R E+I  LSS       +  F H+       L+ ++  S  A 
Sbjct: 174 DVYDVQLSHLGFLILSKRQEIIKKLSS-----EAQRIFGHV-FENKSVLELEYLPSIAAS 227

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            +EEY  +L      D     T  G HR D  +   D    +   S G+ K+  V + LA
Sbjct: 228 SEEEYYTELKRWSDKDLNLGYTTRGIHRDDFEI-LIDGKPALDFASEGQIKLAAVSVVLA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            A L        P+L+LD++ + LD  K+  L + ++   S  F+T  +
Sbjct: 287 SAALYEK-----PVLILDDVFSELDSQKKKNLIKFLSQYQS--FVTSAE 328


>gi|284047391|ref|YP_003397730.1| DNA replication and repair protein RecF [Acidaminococcus fermentans
           DSM 20731]
 gi|283951612|gb|ADB46415.1| DNA replication and repair protein RecF [Acidaminococcus fermentans
           DSM 20731]
          Length = 378

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 159/371 (42%), Gaps = 35/371 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  FRNY  + +      TIF GDN  GKTN+LE I   + G  FR     ++
Sbjct: 1   MRLENLRLLHFRNYEQVSIPLGHNITIFYGDNAQGKTNLLEGIHTAARGFSFRTRHEEEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR--CLQINDVVIRVVDELNKHLRI 122
              G+  + +   +     G + + +K      R  +   L  N V  R   E    + +
Sbjct: 61  PSFGAEEWAAEL-QYRDRYGSSRLLVKRYPVRGRMKKENLLNGNPVTPR---EQYGLVNL 116

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYF 178
               P   ++  G    RR+FLD  +  + P +   +  + R+++ RNR L +       
Sbjct: 117 VLFTPDDLQLVKGDPALRRKFLDMEIAQVSPVYYDLLAQYNRVLQQRNRFLKQCRDREKL 176

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINAL---------------SSLIMEYVQKENFPH 223
           + +     +  +A+L   I   R++ ++ +                +L + YVQK     
Sbjct: 177 EEAQLLVWDGALAQLAAGILDHRLQALSGILQAARQVYDGITGTQEALTLSYVQKRG--- 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
                 G    + +    A +  Y ++L    ++D +   T +GPHR DL + +  + + 
Sbjct: 234 -----DGEETVRENPGPGAWEGFYREQLRLRHRLDYLRGYTSLGPHRDDLEIFHEGRPLR 288

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
            A+GS G+Q+   + + L+    I +     P+LLLD++ + LD+ +R  L   +     
Sbjct: 289 -AYGSQGQQRTAALALKLSELEFIRSVREEYPVLLLDDVLSELDQHRREKLLGFINGT-V 346

Query: 344 QIFMTGTDKSV 354
           Q F+T  D+ +
Sbjct: 347 QTFLTVNDRHL 357


>gi|169794209|ref|YP_001712002.1| recombination protein F [Acinetobacter baumannii AYE]
 gi|184156323|ref|YP_001844662.1| recombination protein F [Acinetobacter baumannii ACICU]
 gi|213155388|ref|YP_002317433.1| DNA replication, recombination and repair protein [Acinetobacter
           baumannii AB0057]
 gi|215481764|ref|YP_002323946.1| DNA replication and repair protein recF [Acinetobacter baumannii
           AB307-0294]
 gi|260558095|ref|ZP_05830306.1| recombinational DNA repair ATPase [Acinetobacter baumannii ATCC
           19606]
 gi|301345943|ref|ZP_07226684.1| recombination protein F [Acinetobacter baumannii AB056]
 gi|301512867|ref|ZP_07238104.1| recombination protein F [Acinetobacter baumannii AB058]
 gi|301594682|ref|ZP_07239690.1| recombination protein F [Acinetobacter baumannii AB059]
 gi|332854715|ref|ZP_08435502.1| DNA replication and repair protein RecF [Acinetobacter baumannii
           6013150]
 gi|332865595|ref|ZP_08436435.1| DNA replication and repair protein RecF [Acinetobacter baumannii
           6013113]
 gi|332873309|ref|ZP_08441264.1| DNA replication and repair protein RecF [Acinetobacter baumannii
           6014059]
 gi|259563348|sp|B7GUX7|RECF_ACIB3 RecName: Full=DNA replication and repair protein recF
 gi|259563349|sp|B7IBH5|RECF_ACIB5 RecName: Full=DNA replication and repair protein recF
 gi|259563350|sp|B2HZA5|RECF_ACIBC RecName: Full=DNA replication and repair protein recF
 gi|259563352|sp|B0VAF5|RECF_ACIBY RecName: Full=DNA replication and repair protein recF
 gi|169147136|emb|CAM84995.1| DNA replication, recombinaison and repair protein [Acinetobacter
           baumannii AYE]
 gi|183207917|gb|ACC55315.1| Recombinational DNA repair ATPase (RecF pathway) [Acinetobacter
           baumannii ACICU]
 gi|213054548|gb|ACJ39450.1| DNA replication, recombination and repair protein [Acinetobacter
           baumannii AB0057]
 gi|213987177|gb|ACJ57476.1| DNA replication and repair protein recF [Acinetobacter baumannii
           AB307-0294]
 gi|260408449|gb|EEX01756.1| recombinational DNA repair ATPase [Acinetobacter baumannii ATCC
           19606]
 gi|322506192|gb|ADX01646.1| recF, DNA replication, recombinaison and repair protein
           [Acinetobacter baumannii 1656-2]
 gi|332727872|gb|EGJ59274.1| DNA replication and repair protein RecF [Acinetobacter baumannii
           6013150]
 gi|332735247|gb|EGJ66324.1| DNA replication and repair protein RecF [Acinetobacter baumannii
           6013113]
 gi|332738515|gb|EGJ69387.1| DNA replication and repair protein RecF [Acinetobacter baumannii
           6014059]
          Length = 360

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 158/360 (43%), Gaps = 49/360 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66
           LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     +Y     
Sbjct: 6   LNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYEA 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F  +     GM+ LA              + +++N   +    +L K L +  + 
Sbjct: 66  DDAIVFAQSATEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHID 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P    I    +  RR+ LD ++F ++P        + R ++ RN LL T      +    
Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174

Query: 186 IEAQMAELGVKINIARVEMI--------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
               +++ G  ++  R+ ++        N LS L+         P +++ L      ++ 
Sbjct: 175 WNKMLSDYGEILHSQRLSIVEQWNVYFQNDLSQLL---------PDLEIEL------EYS 219

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD----YCDKAITIAHGSTGEQK 293
             F   ++   + L +  + D   R T  GPHR+DL +     + D  +     S G++K
Sbjct: 220 PGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-----SRGQKK 273

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           ++++ + L+   ++ + +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D +
Sbjct: 274 LLIIALKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332


>gi|313792565|gb|EFS40651.1| recombination protein F [Propionibacterium acnes HL110PA1]
 gi|313803566|gb|EFS44748.1| recombination protein F [Propionibacterium acnes HL110PA2]
 gi|313839625|gb|EFS77339.1| recombination protein F [Propionibacterium acnes HL086PA1]
 gi|314963870|gb|EFT07970.1| recombination protein F [Propionibacterium acnes HL082PA1]
 gi|315078996|gb|EFT51008.1| recombination protein F [Propionibacterium acnes HL053PA2]
 gi|327457411|gb|EGF04066.1| recombination protein F [Propionibacterium acnes HL092PA1]
          Length = 401

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 169/370 (45%), Gaps = 28/370 (7%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  TIF+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVRADVPMAAGATIFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL        + 
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231
           G    +     + ++A +G ++  AR++ ++A+  L      +E  P   L+   +    
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTI 244

Query: 232 -LDGKF------DQSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDK 280
            L+G +      + S    ++E A +  D    R+ D + R  TL+GP R D+I+ +  +
Sbjct: 245 DLEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V  
Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362

Query: 341 IGSQIFMTGT 350
              Q+ +T  
Sbjct: 363 -ADQVLVTAA 371


>gi|91228346|ref|ZP_01262274.1| recombination protein F [Vibrio alginolyticus 12G01]
 gi|269965276|ref|ZP_06179397.1| recF protein [Vibrio alginolyticus 40B]
 gi|91188106|gb|EAS74410.1| recombination protein F [Vibrio alginolyticus 12G01]
 gi|269830077|gb|EEZ84305.1| recF protein [Vibrio alginolyticus 40B]
          Length = 359

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 160/365 (43%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEA+  L  GR F+ +    V +   
Sbjct: 6   LIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRVIQNEC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +     RR F+D  VF  +P   +    F+RL + RN LL     Y + S+   
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTEPAFYQAWGRFKRLNKQRNALLKTANSYRELSYW-- 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + +MA L   I+  R   I  + + + E + +   P  ++ L  +     D  +     
Sbjct: 179 -DQEMAGLAENISQWRASYIEQMKT-VAETICQTFLPEFEIQLKYYRGWDKDTPY----H 232

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  +K F+    D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 233 EILEKNFE---RDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++   G   I L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L++  K 
Sbjct: 289 HLTEMAGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDNGKL 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|145637297|ref|ZP_01792958.1| recombination protein F [Haemophilus influenzae PittHH]
 gi|145269549|gb|EDK09491.1| recombination protein F [Haemophilus influenzae PittHH]
          Length = 359

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 160/367 (43%), Gaps = 17/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++      F Q +    
Sbjct: 176 VWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +Y + L    + D     T  GP ++D    +  + + +    S G+ K+++  + LA 
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362
              +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T   K     +  E  
Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITKRQLKEMQVENK 345

Query: 363 KFMRISN 369
           K   + N
Sbjct: 346 KMFSVHN 352


>gi|257437731|ref|ZP_05613486.1| DNA replication and repair protein RecF [Faecalibacterium
           prausnitzii A2-165]
 gi|257200038|gb|EEU98322.1| DNA replication and repair protein RecF [Faecalibacterium
           prausnitzii A2-165]
          Length = 373

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 155/367 (42%), Gaps = 28/367 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L ++ +RN AS  L    + T+  G+NG GKTN+LEAI  L+ G+ FR    A++
Sbjct: 1   MRLLSLEVTNYRNIASASLTPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60

Query: 65  TRIGSP--SFFSTFARVEGMEGLAD----ISIKLETRD-DRSVRCLQINDVVIRVVDELN 117
            R G P     ++  R +  E   D    + + + T D  R  R   +N    R    L 
Sbjct: 61  VRRGEPFAVLEASTLRAQQEEQEPDEPNRVRLTVGTPDSQRPGRYASVNGAAPRRAAGLA 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---- 173
                    P    +  G    RR+FLD  +  + P +      + R ++ +N LL    
Sbjct: 121 GSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLTVYRRYLRALQQKNALLRRSP 180

Query: 174 ---TEGYFDS-SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
                 Y +  +    +  ++A  G  I   R   +  L+ L       E   H    + 
Sbjct: 181 AGQERPYAEKMALLEVLNTELAAQGEAIQQRRRAYLERLAPLAC--ANYEELSHGAERME 238

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSM-SRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                +F+    A        L   R+ + + + ++L GPHR D+ +   D        S
Sbjct: 239 LRYAAQFEPGGLA-------ALLKARQNEEVRAGQSLCGPHREDMEL-LLDGQPARVFAS 290

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+Q+ V++ + +A A   +  TG  P+LLLD++ + LD+ ++  L   + +   Q F+T
Sbjct: 291 QGQQRSVVLSLKMAEAAAAAAITGEHPVLLLDDVLSELDDGRKQYLLTRMRE--KQTFVT 348

Query: 349 GTDKSVF 355
             D + F
Sbjct: 349 SCDDTAF 355


>gi|28197948|ref|NP_778262.1| recombination protein F [Xylella fastidiosa Temecula1]
 gi|182680575|ref|YP_001828735.1| recombination protein F [Xylella fastidiosa M23]
 gi|32129956|sp|Q87FC4|RECF_XYLFT RecName: Full=DNA replication and repair protein recF
 gi|226737849|sp|B2I5U9|RECF_XYLF2 RecName: Full=DNA replication and repair protein recF
 gi|28056008|gb|AAO27911.1| DNA replication and repair RecF protein [Xylella fastidiosa
           Temecula1]
 gi|182630685|gb|ACB91461.1| DNA replication and repair protein RecF [Xylella fastidiosa M23]
 gi|307579029|gb|ADN62998.1| recombination protein F [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 364

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 154/333 (46%), Gaps = 31/333 (9%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADI- 88
             F+G+NG GKT++LEA+  +  GR FR      + R GS          E +E   D  
Sbjct: 26  NFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGLIRHGS----------ENLEIFVDWQ 75

Query: 89  -SIKLETRDDRSVRCLQINDVVIRVVDELNKHLR--------ISWLVPSMDRIFSGLSME 139
            +  +  R  R+       + + R+  +   HL         I++   S   I S   + 
Sbjct: 76  ETALINARRRRAGLSHYGQEWIGRLDGQKIMHLASLCAALAVITFESSSYQLINSNAEL- 134

Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199
           RRRFLD  +F ++P        +  +++ RN LL +   + +   + + +++E+G ++  
Sbjct: 135 RRRFLDWGLFHVEPDFLDLWRRYTHVLKQRNSLLKQKE-ELAMLEAWDQKLSEVGEQLTF 193

Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            R + +  L   ++  + +   P++K+   GF    F+  +   +      LF  R+ D 
Sbjct: 194 RRFQYLERLKQRVIPLISRIT-PNLKIH--GF---NFNHGWRRHELPLIDALFISRERDY 247

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILL 318
               T +GPHRSD    +   +I   H  S G+ K++ +   LA A+   +  G  PIL 
Sbjct: 248 QYGYTSLGPHRSDWTPQFS--SIPGVHFLSRGQGKLITLMCLLAQAQDFFDQRGEWPILA 305

Query: 319 LDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           LD++++ LD+  +  +  ++ +I +Q+ +TGT+
Sbjct: 306 LDDLASELDQKHQWRVLEMLAEIPAQVLITGTE 338


>gi|295691866|ref|YP_003600476.1| DNA replication and repair protein recf [Lactobacillus crispatus
           ST1]
 gi|295029972|emb|CBL49451.1| DNA replication and repair protein recF [Lactobacillus crispatus
           ST1]
          Length = 375

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 154/354 (43%), Gaps = 28/354 (7%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FRN   L + FD+   IF+G N  GKTN+LEAI FL+  R  R  +  D+   G   
Sbjct: 8   VQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDLIGFGG-E 66

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-RVVDELNKHLRISWLVPSMD 130
           F +    V   +   D+ + L T+  + V   ++    + + V +LN  L      P   
Sbjct: 67  FTNLLGHVHKSQVELDLRV-LITQKGKKVWINRVEQAKLSKYVGQLNAIL----FSPEDL 121

Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSI 186
            +  G    RRRF+D+    I+  +      + +++  +N  L +       D  +   +
Sbjct: 122 ELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQVFLDVL 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK-- 244
             Q+A +  ++   R + +  LS     +   + + HI L  +  L   +  S   ++  
Sbjct: 182 SDQLAGIAAEVVFRRFKFLKYLS-----HYASDAYAHISLG-SEQLSIAYHPSVADIQAD 235

Query: 245 ---EEYAKKLFDGRKMDSMSR----RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
              EE  +K+      +  S      T  GPHR D+     D      + S G+Q+ + +
Sbjct: 236 DSTEEIYQKILASYARNKASEIRKGTTTSGPHRDDIEFK-LDGQNAHLYASQGQQRSIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD
Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHG-KTQTFITTTD 347


>gi|186686202|ref|YP_001869398.1| recombination protein F [Nostoc punctiforme PCC 73102]
 gi|226737816|sp|B2IVZ4|RECF_NOSP7 RecName: Full=DNA replication and repair protein recF
 gi|186468654|gb|ACC84455.1| DNA replication and repair protein RecF [Nostoc punctiforme PCC
           73102]
          Length = 374

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 169/368 (45%), Gaps = 33/368 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K LN+ +FRNY   ++ F A  TI VG+N  GK+N+LEA+  L+  R  R     D+ +
Sbjct: 3   LKTLNLRQFRNYQDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMTRDRDLVQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  +     A +E   G++D+++ L     RSV      + + R +D L     + +  
Sbjct: 63  EGE-AIAQINATLERQTGVSDLTLTLRRNGRRSVAL--NGESIRRQMDFLGVLNAVQFSS 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183
             +D +  G    RR +LD ++  ++P +   +  +  ++R RN  L    E    +S  
Sbjct: 120 LDLDLVRGG-PEGRRNWLDTLLIQLEPVYAHILQQYNHVLRQRNAFLKRHVETLDATSLH 178

Query: 184 SSI---EAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHIKLSLTG 230
           S +   +AQ+A  G ++   R   I  L+ +            E +Q +  P+I      
Sbjct: 179 SELAVWDAQLATTGTRVIRRRDRAIQRLAPIASAWHASISGSTEALQIKYLPNIPSEDNH 238

Query: 231 FLDGKFDQSF-CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
               +  Q+F   +++    +L  G         TL+GPHR D I    ++     +GS 
Sbjct: 239 --PEEVQQAFLVKIQQRAIAELHQG--------TTLVGPHR-DEIELTINQTPARQYGSQ 287

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q+ +++ + LA  +LI       P+LLLD++ A LD  ++N L   + D   Q  +T 
Sbjct: 288 GQQRTLVLALKLAELQLIEEVVKEPPLLLLDDVLAELDLSRQNQLLDAIQD-RFQTLITT 346

Query: 350 TDKSVFDS 357
           T    FDS
Sbjct: 347 THLGSFDS 354


>gi|238793145|ref|ZP_04636773.1| DNA replication and repair protein recF [Yersinia intermedia ATCC
           29909]
 gi|238727518|gb|EEQ19044.1| DNA replication and repair protein recF [Yersinia intermedia ATCC
           29909]
          Length = 370

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 154/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   A     VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 15  LLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 74

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     RV+  E  + I +    + D  VR   I+      V EL + L +  + P  
Sbjct: 75  AEFV-LHGRVDVNERESSIGLSKSRQGDSKVR---IDGTDGHKVAELAQMLPMQLITPEG 130

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +     + +
Sbjct: 131 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRPWDQE 189

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I         P   LS + F  G   +S      +Y +
Sbjct: 190 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 241

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T IGPH++D  +      +     S G+ K+++  + LA    ++ 
Sbjct: 242 LLERQFERDRALTYTAIGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 300

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+ 
Sbjct: 301 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 360

Query: 369 N 369
           +
Sbjct: 361 H 361


>gi|262273132|ref|ZP_06050949.1| DNA recombination and repair protein RecF [Grimontia hollisae CIP
           101886]
 gi|262222888|gb|EEY74196.1| DNA recombination and repair protein RecF [Grimontia hollisae CIP
           101886]
          Length = 358

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 164/379 (43%), Gaps = 51/379 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I + RN  +  L   +     VG NG GKT++LEA+ +L  GR FR      V R   
Sbjct: 6   LSIHDLRNIEACDLSLSSGFNFLVGPNGSGKTSVLEAVYYLGHGRSFRSPLTGRVIRHQQ 65

Query: 70  PSFFSTFARVE--------GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                   R++        G++   D S +++  ++R  + +Q+ +V           L 
Sbjct: 66  DRLV-VHGRIQHGDTLLPVGLQKNRDGSTEVKIGEERGQKLVQLAEV-----------LP 113

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFD 179
           +  + P    + +G    RR F+D  VF ++P+        +RL + RN L+     Y +
Sbjct: 114 MQLITPEGFELLTGGPKFRRAFIDWGVFHVEPQFYPVWARVKRLTKQRNALMKTARSYRE 173

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALS--------SLIMEYVQKENFPHIKLSLTGF 231
            S+    +A++A L  +I+  R E I  L+        + + EY        I+LS +  
Sbjct: 174 LSYW---DAELAPLANQIDQWRKEYIEKLAERAAKLCEAFLPEY-------EIRLSYSRG 223

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
            D +           YA  L D    D     T+ GPH++DL +      +     S G+
Sbjct: 224 WDKETG---------YADLLRDNFLRDQQLGYTVSGPHKADLRLRVGGTPVEDVL-SRGQ 273

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-T 350
            K+++  + LA  + +++      I L+D+ ++ LD  +R  L   +   G+Q+F++  +
Sbjct: 274 LKLMVCALRLAQGQQLTDDKKKQCIYLIDDFASELDSQRRALLAEQLKATGAQVFVSAIS 333

Query: 351 DKSVFDSLNETAKFMRISN 369
              V +  +E +K   + +
Sbjct: 334 ADQVAEMCDENSKMFHVEH 352


>gi|288932895|ref|YP_003436954.1| DNA replication and repair protein RecF [Klebsiella variicola
           At-22]
 gi|288887624|gb|ADC55942.1| DNA replication and repair protein RecF [Klebsiella variicola
           At-22]
          Length = 357

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 157/361 (43%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +        + +RL++ RN  L +     +     + +
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLRPWDLE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E   A+   + +  Q +  P   L+ + F  G   ++      +YA+
Sbjct: 181 LIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFS-FQRGWEKET------DYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    ++ 
Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  ++ +K  R+ 
Sbjct: 292 VSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 K 352


>gi|204928659|ref|ZP_03219858.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204322092|gb|EDZ07290.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 357

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 158/362 (43%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      + EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E   A++  + +  Q +  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSIAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 TV 350


>gi|260553770|ref|ZP_05826040.1| recombinational DNA repair ATPase [Acinetobacter sp. RUH2624]
 gi|260405074|gb|EEW98574.1| recombinational DNA repair ATPase [Acinetobacter sp. RUH2624]
          Length = 360

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 156/352 (44%), Gaps = 33/352 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66
           LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     +Y     
Sbjct: 6   LNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYEA 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F  +     GM+ LA              + +++N   +    +L K L +  + 
Sbjct: 66  DDAIVFAQSATEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHID 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P    I    +  RR+ LD ++F ++P        + R ++ RN LL T      +    
Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
               ++  G  ++  R+ ++   +      + ++  P +++ L      ++   F   ++
Sbjct: 175 WNKMLSNYGEILHSQRLSIVEQWNVYFQNDL-RQLLPDLEIEL------EYSPGFHT-EQ 226

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD----YCDKAITIAHGSTGEQKVVLVGIFL 301
              + L +  + D   R T  GPHR+DL +     + D  +     S G++K++++ + L
Sbjct: 227 GLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-----SRGQKKLLIIALKL 281

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           +   ++ + +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D +
Sbjct: 282 SQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332


>gi|322617251|gb|EFY14156.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619061|gb|EFY15947.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625128|gb|EFY21956.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630179|gb|EFY26950.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634395|gb|EFY31129.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635280|gb|EFY31995.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642909|gb|EFY39492.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647624|gb|EFY44111.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650570|gb|EFY46977.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656404|gb|EFY52696.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661584|gb|EFY57807.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661665|gb|EFY57884.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668221|gb|EFY64379.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672850|gb|EFY68958.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322674969|gb|EFY71055.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683659|gb|EFY79672.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687735|gb|EFY83704.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192050|gb|EFZ77285.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200532|gb|EFZ85610.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204958|gb|EFZ89943.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206701|gb|EFZ91658.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211773|gb|EFZ96606.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218635|gb|EGA03342.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220036|gb|EGA04506.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224806|gb|EGA09071.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232485|gb|EGA16587.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235260|gb|EGA19345.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241048|gb|EGA25085.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241402|gb|EGA25434.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248633|gb|EGA32563.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252068|gb|EGA35928.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258628|gb|EGA42291.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262341|gb|EGA45899.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268177|gb|EGA51653.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270591|gb|EGA54036.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 357

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 158/362 (43%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      + EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E   A++  + +  Q +  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSIAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 TV 350


>gi|296392443|ref|YP_003657327.1| DNA replication and repair protein RecF [Segniliparus rotundus DSM
           44985]
 gi|296179590|gb|ADG96496.1| DNA replication and repair protein RecF [Segniliparus rotundus DSM
           44985]
          Length = 401

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 158/377 (41%), Gaps = 31/377 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++    I +FR++    +  D   T+F+G NG GKTN++EA+  LS     R A  A +
Sbjct: 1   MRVSSFEIRDFRSWEHAAMRLDEGCTLFLGRNGYGKTNLVEALGVLSSLSSHRGAQNAAM 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+  +F S     EG +    +++ L     ++ +  Q+N  V R   E+   LR  
Sbjct: 61  VRRGAAEAFLSAEVLNEGRK----LTVGLRIAPGKATKA-QLNG-VNRPTREVAGILRTV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GY 177
           +  P    +  G   ERRRFLD  +    PR      DFER++R R  LL          
Sbjct: 115 FFSPEDLALVRGEPGERRRFLDETLIVRQPRMAGVKADFERVLRQRATLLKSLSGARGAA 174

Query: 178 FDSSWCSSIEA---QMAELGVKINIARVEMINALSSLI-------------MEYVQKENF 221
            +    +++EA   Q A     + +AR++++ ALS  +              E   + + 
Sbjct: 175 RNDEARATLEAWDEQFASRAAALTVARLDLVRALSPRVGRCYAAIDPLSDDAELRYRMSA 234

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
                  TG      + S   +     ++L   R+ +    + L+GPHR DL +     A
Sbjct: 235 EDADQEETGGEAPVGETSEPQVANAVMERLSQLREEELRRGQCLVGPHRDDLELRLAGGA 294

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
              A  S GE     + + +A   L+    G  P+L+LD++ A LD  +R  +  +    
Sbjct: 295 AR-AFVSHGEAWSYALALRVAAFELLRE-EGHDPVLVLDDVFAELDGPRREVVAGLAKKA 352

Query: 342 GSQIFMTGTDKSVFDSL 358
              +       +V D L
Sbjct: 353 EQTLITAADPATVPDGL 369


>gi|289705898|ref|ZP_06502277.1| DNA replication and repair protein RecF [Micrococcus luteus SK58]
 gi|289557383|gb|EFD50695.1| DNA replication and repair protein RecF [Micrococcus luteus SK58]
          Length = 404

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 149/351 (42%), Gaps = 48/351 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +++FR+Y    L   +  T+ +G NGVGKTN++EAI +L   +  R +S A + R
Sbjct: 3   LSHLTVADFRSYRWADLELTSGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQLVR 62

Query: 67  IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G        AR+ G    G   ++++LE    RS R        +R  + L   LR   
Sbjct: 63  FG-----RDRARIAGRVHRGSRTVALELEILPGRSNRVAINRGAPVRAKEGLGI-LRTVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + +G    RRR LD+++  + P       D+ER++R RN LL        W  
Sbjct: 117 FAPEDLSLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKSSRGSRRWGP 176

Query: 185 SIEAQMA-------ELGVKINIARVEMINALSSLIME-------------YVQKENFP-- 222
             +A +A         G ++   R+ ++  L+  + E             Y  +   P  
Sbjct: 177 EEDATLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLA 236

Query: 223 ---HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
              H ++     L     ++  + +EE   +             TL+GPHR +L + +  
Sbjct: 237 RGTHAEVPAVADLAADMRRTLESQREEERARSL-----------TLVGPHRDELAL-FLG 284

Query: 280 KAITIAHGSTGEQKVVLVGIFL-AHARLISN--TTGFAPILLLDEISAHLD 327
            A    + S GE   + + + + A+  L+++       P+L+LD++ A LD
Sbjct: 285 PAPARGYASHGETWSLALALRMAAYDVLVADDPDPDARPVLILDDVFAELD 335


>gi|146309670|ref|YP_001174744.1| recombination protein F [Enterobacter sp. 638]
 gi|166918723|sp|A4W4R3|RECF_ENT38 RecName: Full=DNA replication and repair protein recF
 gi|145316546|gb|ABP58693.1| DNA replication and repair protein RecF [Enterobacter sp. 638]
          Length = 357

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 156/359 (43%), Gaps = 15/359 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQVGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            SF     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  ESFI-LHGRLQGSERETSIGLTKDKQGDSKVR---IDGTDGHKVAELALLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +        + +RL++ RN  L +     +     + +
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQVRPWDME 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E    ++  + +   K+  P   L+ + F  G   ++      +YA+
Sbjct: 181 LVPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFS-FQRGWEKET------DYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    ++ 
Sbjct: 233 VLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367
            +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  ++ +K   +
Sbjct: 292 ESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDKNSKMFTV 350


>gi|332521002|ref|ZP_08397462.1| DNA replication and repair protein RecF [Lacinutrix algicola
           5H-3-7-4]
 gi|332043532|gb|EGI79728.1| DNA replication and repair protein RecF [Lacinutrix algicola
           5H-3-7-4]
          Length = 359

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 153/363 (42%), Gaps = 46/363 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N+ S    F+      VG+NGVGKTN+L+AI  LS G+ +     +   +
Sbjct: 3   LKSLSLLNYKNFDSKTFEFNDTINCLVGNNGVGKTNVLDAIYHLSFGKSYFNPIASQNIK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                FF              I + L+    + ++         +  ++ ++H+    LV
Sbjct: 63  -HDEDFFVVNGEYNKENKSEKIVVSLKRGQKKVIKR------NAKAYEKFSEHIGFLPLV 115

Query: 127 ---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179
              P+   + +  S+ RR+F+D ++   D  +   +I + + +  RN LL        F+
Sbjct: 116 IISPADRDLITEGSVTRRKFIDSVISQSDKFYLEHLIKYNKALAQRNSLLKYFALNNTFN 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK---- 235
                   AQ+   G        E+ N  +S +  ++     P  K       +G     
Sbjct: 176 QDTLDIYNAQLHTFGT-------EVFNKRNSFLETFI-----PIFKSRYQAISNGNEIVD 223

Query: 236 -------FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                  FD    +L ++   K       D   + T +G H+ DL+ +  +  I    GS
Sbjct: 224 LVYKSDLFDNELESLLKKVINK-------DKAVQYTSVGVHKDDLLFNIDEHPIK-KFGS 275

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFM 347
            G+QK  L+ + LA    I   +G  PILLLD+I   LDE++   + ++V D    Q+F+
Sbjct: 276 QGQQKSFLIALKLAQFDFIKQQSGVNPILLLDDIFDKLDEERVTQIIKLVDDENFGQLFI 335

Query: 348 TGT 350
           + T
Sbjct: 336 SDT 338


>gi|315925614|ref|ZP_07921824.1| recombination protein F [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621155|gb|EFV01126.1| recombination protein F [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 372

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 158/351 (45%), Gaps = 22/351 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRNYAS +  F     +  G N  GKTN+LEA+ FL+ G   R  + AD+ +   
Sbjct: 6   LQLKHFRNYASEQFDFSDHINVITGANAQGKTNLLEALFFLARGYSHRATTVADLLQFEQ 65

Query: 70  PSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           P+FF+    V   +G+  +IS + E R     + L I+           K +      P 
Sbjct: 66  PAFFARAGIVR--DGIRHEISARYENRR----KVLTIDGKKEPKHAAAGKIVHTILFEPD 119

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI-- 186
             RI      +RRRF++  +    P +   +  + + +  RN LL E    +S  S +  
Sbjct: 120 DLRIVKAGPEKRRRFMNEEISGHMPGYLPVLGHYRKALAQRNALLKEIRHAASLKSLLAG 179

Query: 187 -EAQMAELGVKI---NIARVEMINALSSLIMEYVQKENFPHIKLSL-TGFLDGKFDQSFC 241
            +AQ+   G ++     A ++ +NA++  +   +  +    ++LS     +D   DQ   
Sbjct: 180 WDAQLVHYGARLIRYRQAYLKRLNAVAQQLHTGL-SDGREALRLSYRNNVIDQPADQE-- 236

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIF 300
           A+   + ++L    + D     T  GP   D+ V  C D      + S G+Q+   + + 
Sbjct: 237 AIARRFDERLKASVEEDIARGSTATGPQVDDMQV--CIDGREARKYASQGQQRTAAIALK 294

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           L+   +  + TG  PI+LLD+I + LD  ++  +  I+    +Q F+T TD
Sbjct: 295 LSQIEIYRHATGDWPIVLLDDILSELDAVRQEKILAILGR--TQAFITCTD 343


>gi|238783050|ref|ZP_04627077.1| DNA replication and repair protein recF [Yersinia bercovieri ATCC
           43970]
 gi|238716051|gb|EEQ08036.1| DNA replication and repair protein recF [Yersinia bercovieri ATCC
           43970]
          Length = 361

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 154/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     RV+  E  + + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  AEFV-LHGRVDVNERESSVGLSKSRQGDSKVR---IDGTDGHKVAELAQMLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +     + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRPWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I         P   LS + F  G   +S      +Y +
Sbjct: 181 IVPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T IGPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFERDRALTYTAIGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+ 
Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351

Query: 369 N 369
           +
Sbjct: 352 H 352


>gi|229496502|ref|ZP_04390216.1| RecF protein [Porphyromonas endodontalis ATCC 35406]
 gi|229316399|gb|EEN82318.1| RecF protein [Porphyromonas endodontalis ATCC 35406]
          Length = 372

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 160/359 (44%), Gaps = 17/359 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  F++ A+    F  +   F G NG+GKTN+L+AI +LS  R           R
Sbjct: 3   LEHLELVAFKSIATASCDFAPKLNCFFGGNGMGKTNLLDAIHYLSMARSHLNTVDRLAIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           IGS  +  S   R    E    I+++L        + L  N    R+   L++H+    L
Sbjct: 63  IGSTEAILSGDYRANEGEETDRIALRLRMG---QAKALSRNG---RLYKRLSEHIGRYPL 116

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           V   P   R+  G S ERR +LDR++   D  +   +I ++R ++ RN LL   + D   
Sbjct: 117 VIISPQDYRLIRGGSDERRNWLDRLLSQHDALYLDLLIRYDRALQQRNTLLKSDFQDEML 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S +E QMA  GV+I   R E +   +    +  Q+      +     +L          
Sbjct: 177 LSIVEEQMALTGVEIAQKRAEFVRDFTPTFNQLYQEICGDKSECVTLNYLTATAPN---- 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            +E + + L   R+ +  +  T  G H+ DL +    + +    GS G+ K  L  +   
Sbjct: 233 -RELFTQDLRQRRREERATGYTTYGIHKDDLEM-LLGENLMRKIGSEGQNKTFLTALKFT 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360
              L++N     PILLLD++   LD ++   +  IV+  I  QIF+T T++   D + E
Sbjct: 291 EYNLLANKLQCRPILLLDDLFDKLDAERVERIIGIVSRPIFGQIFITDTNRKYLDDIIE 349


>gi|227877544|ref|ZP_03995604.1| recombination protein F [Lactobacillus crispatus JV-V01]
 gi|256843828|ref|ZP_05549315.1| recombination protein F [Lactobacillus crispatus 125-2-CHN]
 gi|256849617|ref|ZP_05555049.1| recombination protein F [Lactobacillus crispatus MV-1A-US]
 gi|293380894|ref|ZP_06626930.1| DNA replication and repair protein RecF [Lactobacillus crispatus
           214-1]
 gi|227862843|gb|EEJ70302.1| recombination protein F [Lactobacillus crispatus JV-V01]
 gi|256613733|gb|EEU18935.1| recombination protein F [Lactobacillus crispatus 125-2-CHN]
 gi|256713733|gb|EEU28722.1| recombination protein F [Lactobacillus crispatus MV-1A-US]
 gi|290922567|gb|EFD99533.1| DNA replication and repair protein RecF [Lactobacillus crispatus
           214-1]
          Length = 375

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 154/354 (43%), Gaps = 28/354 (7%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FRN   L + FD+   IF+G N  GKTN+LEAI FL+  R  R  +  D+   G   
Sbjct: 8   VQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDLIGFGG-E 66

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-RVVDELNKHLRISWLVPSMD 130
           F +    V   +   D+ + L T+  + V   ++    + + V +LN  L      P   
Sbjct: 67  FTNLLGHVHKSQVDLDLRV-LITQKGKKVWINRVEQAKLSKYVGQLNAIL----FSPEDL 121

Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSI 186
            +  G    RRRF+D+    I+  +      + +++  +N  L +       D  +   +
Sbjct: 122 ELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQVFLDVL 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK-- 244
             Q+A +  ++   R + +  LS     +   + + HI L  +  L   +  S   ++  
Sbjct: 182 SDQLAGIAAEVVFRRFKFLKYLS-----HYASDAYAHISLG-SEQLSIAYHPSVADIQAD 235

Query: 245 ---EEYAKKLFDGRKMDSMSR----RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
              EE  +K+      +  S      T  GPHR D+     D      + S G+Q+ + +
Sbjct: 236 DSTEEIYQKILASYARNKASEIRKGTTTSGPHRDDIEFK-LDGQNAHLYASQGQQRSIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD
Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYIHG-KTQTFITTTD 347


>gi|327482927|gb|AEA77334.1| DNA recombination and repair protein RecF [Vibrio cholerae
           LMA3894-4]
          Length = 357

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 166/364 (45%), Gaps = 20/364 (5%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +     
Sbjct: 2   IQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNECSE 61

Query: 72  FFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            F    R+      +D   + + +  + D S   ++I     + + +L + L +  + P 
Sbjct: 62  LF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIHPE 119

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSI 186
              + +    +RR F+D  VF  +P        F+RL + RN LL   + Y + S+    
Sbjct: 120 GFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRELSYW--- 176

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++A L  +I+  R   +N L + + E + +   P   + L  +   + DQ + ++ E+
Sbjct: 177 DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYRGWEKDQPYQSILEK 235

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
             ++       D     T  GP+++DL +      +     S G+   ++  + +A  + 
Sbjct: 236 NFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLFKMVCALRVAQGQH 287

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++K  
Sbjct: 288 LTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSKTF 347

Query: 366 RISN 369
            +++
Sbjct: 348 HVAH 351


>gi|239503907|ref|ZP_04663217.1| recombination protein F [Acinetobacter baumannii AB900]
 gi|323516068|gb|ADX90449.1| recombination protein F [Acinetobacter baumannii TCDC-AB0715]
          Length = 360

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 157/360 (43%), Gaps = 49/360 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYADVTR 66
           LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     +Y     
Sbjct: 6   LNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNYIQYEA 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F  +     GM+ LA              + +++N   +    +L K L +  + 
Sbjct: 66  DDAIVFAQSATEKIGMQKLAS-----------GEQLMKVNGDTVATQGQLAKLLPLQHID 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P    I    +  RR+ LD ++F ++P        + R ++ RN LL T      +    
Sbjct: 115 PQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEP 174

Query: 186 IEAQMAELGVKINIARVEMI--------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
               ++  G  ++  R+ ++        N LS L+         P +++ L      ++ 
Sbjct: 175 WNKMLSNYGEILHSQRLSIVEQWNVYFQNDLSQLL---------PDLEIEL------EYS 219

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD----YCDKAITIAHGSTGEQK 293
             F   ++   + L +  + D   R T  GPHR+DL +     + D  +     S G++K
Sbjct: 220 PGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-----SRGQKK 273

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           ++++ + L+   ++ + +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D +
Sbjct: 274 LLIIALKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHA 332


>gi|78045559|ref|YP_361734.1| recombination protein F [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|97181094|sp|Q3BZS9|RECF_XANC5 RecName: Full=DNA replication and repair protein recF
 gi|78033989|emb|CAJ21634.1| DNA replication and repair protein RecF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 368

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 145/345 (42%), Gaps = 14/345 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      + + G+
Sbjct: 6   LSIHRLRRFHTVELHPSSTLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65

Query: 70  PSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
                F  +    G  G       L  R       L   DV    +  L   L +    P
Sbjct: 66  NDLEVFVEWKEGNGAAGERTRRAGLRHRGQEWTGRLDGEDVA--QLGALCAALAVVTFEP 123

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
               + SG    RRRFLD  +F ++P        + R ++ RN LL +G        + +
Sbjct: 124 GSHVLISGGGEPRRRFLDWGLFHVEPDFLTMWRRYARALKQRNALLKQGA-QPRMLDAWD 182

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            ++AE G  +   R   +  L   ++  V     P + LS   F  G + +   +L    
Sbjct: 183 HELAESGESLTSRRTRYLERLQERLVP-VADAIAPALGLSALTFAPG-WKRHEVSL---- 236

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARL 306
           A  L   R+ D  +  T  GPHR+D +  +  +A+      S G+ K+  +   LA A  
Sbjct: 237 ADALLLARERDRQNGYTSQGPHRADWVPSF--QALPGRDALSRGQAKLTALACLLAQAED 294

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            +   G  P++ LD++ + LD   +  + + +    +Q+ +T T+
Sbjct: 295 FAYERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATE 339


>gi|134096624|ref|YP_001102285.1| recombination protein F [Saccharopolyspora erythraea NRRL 2338]
 gi|291005722|ref|ZP_06563695.1| recombination protein F [Saccharopolyspora erythraea NRRL 2338]
 gi|166221860|sp|A4F5N5|RECF_SACEN RecName: Full=DNA replication and repair protein recF
 gi|133909247|emb|CAL99359.1| DNA replication and repair protein [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 391

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 165/375 (44%), Gaps = 46/375 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +++FR++    L F+   T+ VG NG GKTN++EA+ +++     R A+ A + R
Sbjct: 3   VRHLQVTDFRSWPHADLTFEPGPTVLVGSNGQGKTNLVEALGYVATLGSHRVATDAPLVR 62

Query: 67  IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+       A V  G E    + ++LE    ++ R  +IN        ++   LR    
Sbjct: 63  YGTQRAVVRAAVVNHGRE----LLVELEITPGKANRA-RINRGAAGKPRDVLGILRTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    +  G   ERRRFLD ++ A  PR+     D++R++R R+ LL          S 
Sbjct: 118 APEDMAMVRGDPGERRRFLDDLLVARAPRYAGVRSDYDRVLRQRSALLKSAGAAKRGGSG 177

Query: 186 --------IEAQMAELGVKINIARVEMINALSSLI------MEYVQKENFPHIKLSLTGF 231
                    +  +A  G ++   R++++ A++  +      +    +E  P  +++    
Sbjct: 178 GDLRTLEVWDGHLARYGAELLAGRLDLVAAIAPHVTSAYANVAATAEETAPSGRVA---- 233

Query: 232 LDGKFDQSFC-ALKEEYAKKLFDGRKMDSMSRR-----------------TLIGPHRSDL 273
            D ++  S   +L E Y     +   ++ + +                  +L+GPHR DL
Sbjct: 234 -DVRYRSSLGESLPEGYGVPRGEPADVEVLEKALLAELERVRAQELERGVSLVGPHRDDL 292

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            +    +     + S GE     + + LA   L++   G  P+L+LD++ A LD  +R+ 
Sbjct: 293 EL-MLGELPAKGYASHGESWSFALALRLASYHLLAE-DGAEPVLILDDVFAELDRRRRSR 350

Query: 334 LFRIVTDIGSQIFMT 348
           L  +V     Q+ +T
Sbjct: 351 LAELVAG-AEQVLVT 364


>gi|71899733|ref|ZP_00681885.1| RecF protein [Xylella fastidiosa Ann-1]
 gi|71730528|gb|EAO32607.1| RecF protein [Xylella fastidiosa Ann-1]
          Length = 364

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 154/335 (45%), Gaps = 31/335 (9%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADI- 88
             F+G+NG GKT++LEA+  +  GR FR      + R GS          E +E   D  
Sbjct: 26  NFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGLIRHGS----------ENLEIFVDWQ 75

Query: 89  -SIKLETRDDRSVRCLQINDVVIRVVDELNKHLR--------ISWLVPSMDRIFSGLSME 139
            +  +  R  R+       + + R+  +   HL         I++   S   I S   + 
Sbjct: 76  ETALINARRRRAGLSHYGQEWIGRLDGQKIMHLASLCAALAVITFESSSYQLINSNAEL- 134

Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199
           RRRFLD  +F ++P        +  +++ RN LL +     +   + + +++E+G ++  
Sbjct: 135 RRRFLDWGLFHVEPDFLDLWRRYTHVLKQRNSLLKQKE-KLAMLEAWDQKLSEVGEQLTF 193

Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            R + +  L   ++  + +   P++K+   GF    F+  +   +      LF  R+ D 
Sbjct: 194 RRFQYLERLKQRVIPLISRIT-PNLKIH--GF---NFNHGWRRHELPLIDALFISRERDY 247

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILL 318
               T +GPHRSD    +   +I   H  S G+ K++ +   LA A+   +  G  PIL 
Sbjct: 248 QYGYTSLGPHRSDWTPQFS--SIPGVHFLSRGQGKLITLMCLLAQAQDFFDQRGEWPILA 305

Query: 319 LDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           LD++++ LD+  +  +  ++ +I +Q+ +TGT+ S
Sbjct: 306 LDDLASELDQKHQWRVLEMLAEIPAQVLITGTEIS 340


>gi|269791622|ref|YP_003316526.1| DNA replication and repair protein RecF [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099257|gb|ACZ18244.1| DNA replication and repair protein RecF [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 354

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 147/354 (41%), Gaps = 30/354 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +  + + +  +RN     +       +F G NG GKTN+LEA    S   GF R S    
Sbjct: 1   MHFRSIKLYRYRNLEDQAVNLSPGLNLFFGPNGAGKTNLLEAFCAASGWGGFGRPSMIPR 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              GSPS  S  A V    G  +I+   +  + R +  L+I+   +    EL + + +  
Sbjct: 61  RGDGSPSPMS--AAVAQASGEEEITCAFQF-NRRPL--LKIDGSAV-TGSELRRRMPVLA 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    +  G    RRR LD +     P +   +  + R +R R   L  G     W  
Sbjct: 115 FLPDSAALVDGPPSMRRRLLDMVCVLCVPGYGEALTRYRRAVRQRMASLRCG----RWEE 170

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-------FLDGKFD 237
                MA   V+I  AR  +   L  L   +  +    H++ S  G          G+F 
Sbjct: 171 MTLRVMAREAVEIWRARSVVAPRLCQLSQAFASRLGI-HLEASYVGQHESLDRLEPGRFL 229

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           ++  ++K E           +   RR   GPHR D+++     A  +A  S G+++    
Sbjct: 230 EAARSIKGE-----------EMTHRRPRFGPHRDDVVLTSGGHAAGLAL-SRGQRRRAFA 277

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + +A A+++       P+L++DE+ A +D + R  + R + ++G Q+  +  D
Sbjct: 278 ALVMASAQVVYKALRRGPVLVMDEVFAEVDREGRTLMARGLVELGVQVLASTAD 331


>gi|332163519|ref|YP_004300096.1| recombination protein F [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325667749|gb|ADZ44393.1| recombination protein F [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330861743|emb|CBX71917.1| DNA replication and repair protein recF [Yersinia enterocolitica
           W22703]
          Length = 361

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 155/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     RV+  E  + + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  AEFV-LHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +   + + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I         P   LS + F  G   +S      +Y +
Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T +GPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+ 
Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351

Query: 369 N 369
           +
Sbjct: 352 H 352


>gi|161505633|ref|YP_001572745.1| recombination protein F [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189039638|sp|A9MJU2|RECF_SALAR RecName: Full=DNA replication and repair protein recF
 gi|160866980|gb|ABX23603.1| hypothetical protein SARI_03809 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 357

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 159/362 (43%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E  +A++  + +  Q +  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L    + D +   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YADVLERSFERDRILTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  ++ +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDKNSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 SV 350


>gi|325677517|ref|ZP_08157181.1| recombination protein F [Rhodococcus equi ATCC 33707]
 gi|325551764|gb|EGD21462.1| recombination protein F [Rhodococcus equi ATCC 33707]
          Length = 408

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 163/353 (46%), Gaps = 35/353 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++  ++ +FR++ ++ +  +   T+FVG NG GKTN+LEA+ +LS     R +S A + R
Sbjct: 3   VRKFSLRDFRSWDAVTVDLEPGCTVFVGRNGHGKTNLLEALGYLSTLSSHRVSSDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+P ++        G E    + I +E  D ++ R  +IN    R   E+   L+    
Sbjct: 63  AGAPQAYAGALIANHGRE----LGIDIEINDGKANRA-RINQSPARRPREIVGILQTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGYF 178
            P    +  G   +RRRFLD ++ A  PR      D+++++R R+ LL         G  
Sbjct: 118 APEDLSLVRGDPGDRRRFLDELLTARRPRMAGVRADYDKVLRQRSALLKTAGGALRRGAR 177

Query: 179 DSSWCSSI------EAQMAELGVKINIARVEMINALSS-LIMEY--VQKENFP---HIKL 226
            S   S++      +  +A  G ++  +R+ +++ L+  L+  Y  +  E+ P     K 
Sbjct: 178 SSDGASALATLDIWDGHLAAHGAQLLASRLRLVHDLAPHLVASYRSLAPESRPASVRYKS 237

Query: 227 SL-----TGFLDGKFDQS---FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
           SL     T  LD   +        L+  +  +L + R+ +      L+GPHR DL +   
Sbjct: 238 SLGTSLPTELLDPTREPEPDDVELLEVSFLNELSEMRQREIERGVCLVGPHRDDLELILG 297

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           D+       S GE     + + L    L+ +  G  P+L+LD++ A LD  +R
Sbjct: 298 DQPAK-GFASHGESWSFALSMRLGAFFLLRDD-GSDPVLMLDDVFAELDRKRR 348


>gi|187918304|ref|YP_001883867.1| DNA replication and repair protein RecF [Borrelia hermsii DAH]
 gi|119861152|gb|AAX16947.1| DNA replication and repair protein RecF [Borrelia hermsii DAH]
          Length = 355

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 157/352 (44%), Gaps = 27/352 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI+F N   F+N  +  + FD  +  F G+NG GKTNIL+AI  L+    F   +  ++ 
Sbjct: 4   KIEFFN---FKNIKNQVINFDFNNIYFYGENGSGKTNILDAIYCLAFASSFLVNTDRELI 60

Query: 66  RIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             G   F+   F +        D  I L  R+ +  + +++N+ +I+  D  +  L I  
Sbjct: 61  TYGKTEFYLKCFYKTRE----KDAEISLSFRNGK--KEIKVNNSLIK--DRKDLILNIPA 112

Query: 125 LVPS-MDRIFS-GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           +V S  D  F  G   ++R F D+ +  +   +   +  + R+++ RN +L +G  +   
Sbjct: 113 IVFSNYDTDFIIGEPAKKRWFFDQAISLVSLSYLDSLRKYRRILKQRNLILKQG--NRDL 170

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS--F 240
                    +  ++I   R   I         Y        +   ++  L+ K+  S  +
Sbjct: 171 LKVYNEAFVDYALEIIRMRENFIKHFYEFFKYYYS------LIFDVSYNLEIKYLPSVAY 224

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
           C  ++E+   LF   K + ++  TLIGPHR DL      + +   H STGE + + +   
Sbjct: 225 CG-RDEFLHLLFLKEKDEFLNESTLIGPHR-DLYEILSGERVFTHHSSTGETRALALIYR 282

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           L    + +   G APILL D++   LD  +R  +F I+    SQ F T  D+
Sbjct: 283 LVQVIIFNKRFGIAPILLFDDVFLELDSTRRKRVFDILPK-DSQCFFTFVDE 333


>gi|260101875|ref|ZP_05752112.1| recombination protein F [Lactobacillus helveticus DSM 20075]
 gi|260084303|gb|EEW68423.1| recombination protein F [Lactobacillus helveticus DSM 20075]
 gi|328468763|gb|EGF39734.1| recombination protein F [Lactobacillus helveticus MTCC 5463]
          Length = 375

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 152/352 (43%), Gaps = 24/352 (6%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FRN   L + FD    IF+G N  GKTN+LEAI FL+  R  R  S  D   IG   
Sbjct: 8   VQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNS--DKELIG--- 62

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
           F   +  + G    + + + L     +  + + IN V    + +    L      P    
Sbjct: 63  FGGEYTNLLGHVRKSQVDLTLRVLITQKGKKVWINRVEQAKLSKYVGQLNAILFSPEDLE 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187
           +  G    RRRF+D+    I+  +      + +++  +N  L +       D  +   + 
Sbjct: 123 LIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQVFLDVLS 182

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-----KLSLTGFLDGKFDQSFCA 242
            Q+A +  ++   R + +  LS     +     + HI     KL++         ++   
Sbjct: 183 DQLAGIAAEVIFRRFKFLRYLS-----HYASNAYAHISLGGEKLAIAYHPSVSTIEADDT 237

Query: 243 LKEEYAKKL--FDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           ++E Y K L  F+  K   M + T   GPHR D+      K   + + S G+Q+ + + +
Sbjct: 238 VEEIYQKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIALSV 296

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD
Sbjct: 297 KLAEIQLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYIHG-KTQTFITTTD 347


>gi|253582582|ref|ZP_04859803.1| DNA replication and repair protein recF [Fusobacterium varium ATCC
           27725]
 gi|251835452|gb|EES63992.1| DNA replication and repair protein recF [Fusobacterium varium ATCC
           27725]
          Length = 375

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 160/369 (43%), Gaps = 42/369 (11%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           +N   FRN     + F  +  +F G NG GKT++LEA+ F S G+ FR    +++ + G 
Sbjct: 6   INYVNFRNLQDGNVKFFPKMNLFYGKNGQGKTSLLEALYFNSTGKSFRTTKSSEMMKYGY 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                 +   +   G   +++K    D +       N   ++  DE    L +   +P  
Sbjct: 66  KR-TGVYVVYKDNIGEKTLTVKFNNEDKKE---YSYNGKRVQ-YDEFYGKLNVVTYIPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR F D  +      + + + +F ++++ RN+ L E        +  + +
Sbjct: 121 IVLITGSPSVRRNFFDGEIAQTSSEYFQELKNFNKILKIRNKYLKEKKHKEPEFTIYQDE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
             + G K+   R+E +  +S ++       N  + KL    F D K       L  +Y  
Sbjct: 181 FIKYGAKVIEKRMEYVKKISIIL-------NLNYRKL----FDDKK------ELSIQYQC 223

Query: 250 KLFDGRKM------DSMSRRT-------------LIGPHRSDLIVDYCDKAITIAHGSTG 290
            L + +KM      D++ +RT             L GP + D +  + +     +  S G
Sbjct: 224 HLGNIKKMSLREIEDALRKRTEEKLGQELRYGFSLSGPQKDDFLF-FLNSYEAKSTASQG 282

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           E+K ++  + L+   ++      +PIL++D+IS++ D ++++++   +     Q+F++ T
Sbjct: 283 EKKSIIFSLKLSEIDMVLREKKESPILIIDDISSYFDSNRKDSILNYLEKRNIQVFISST 342

Query: 351 DKSVFDSLN 359
            +   +S N
Sbjct: 343 GELGINSEN 351


>gi|308175817|ref|YP_003915223.1| DNA replication and repair protein RecF [Arthrobacter arilaitensis
           Re117]
 gi|307743280|emb|CBT74252.1| DNA replication and repair protein RecF [Arthrobacter arilaitensis
           Re117]
          Length = 387

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 173/394 (43%), Gaps = 38/394 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L+++ FR+YA   +       + +G NGVGKTNI+E+I +L+     R ++ A +  
Sbjct: 3   ISQLSLTGFRSYAQADVHLAPGINVLIGPNGVGKTNIVESIGYLANLSSHRVSNDAPLL- 61

Query: 67  IGSPSFFSTFARVEGM--EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +F S  A + G    G    ++++E    +  R  +IN        E+   +R   
Sbjct: 62  ----NFESDRALIRGTVHRGPQTTTLEVEITSGKINRA-RINRANPVRAREILGMVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RR+FLD ++ A+ P       D++R+++ RN LL      S   +
Sbjct: 117 FAPEDLALIKGDPSNRRKFLDELLVALRPIESGTKNDYDRIVKQRNALLKSIRGKSKLST 176

Query: 185 SIEAQMAELGVKINIARVEMINA---LSSLIMEYVQ----------KENFPHIKLSLTGF 231
           S E  +    +++ +    +I     + +LI  Y+Q          K+     + SL G 
Sbjct: 177 SQENTLKAWDLQLTMTGARLIRGRLDVLALIRPYMQAAYADLADGAKDARAVYRSSLEGE 236

Query: 232 LDGKF--DQSFCALKEEYAKKLFDGRKMDSMSRR-----TLIGPHRSDLIVDYCDKAITI 284
           LD      +   +L++E  ++L       + SR      +L GPHR DL +     A   
Sbjct: 237 LDENSLPAEDLESLEQEEIQELLLTAIEANRSREVDRGISLFGPHRDDLTL-ILGPAPAK 295

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNT---TGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
            + S GE     + + LA  R+  +     G  PIL+LD++ A LD  +R+ L  IV   
Sbjct: 296 GYASHGETWSFALALRLAAYRVFGDDDPRPGSGPILILDDVFAELDTTRRDRLAHIVAG- 354

Query: 342 GSQIFMTGTDKSVFDSLNETAK--FMRISNHQAL 373
             Q+ +T    +V + + E  K  F ++S  Q +
Sbjct: 355 AEQVLVTA---AVVEDVPEALKGHFFQVSPGQVV 385


>gi|295133310|ref|YP_003583986.1| DNA replication and repair protein RecF [Zunongwangia profunda
           SM-A87]
 gi|294981325|gb|ADF51790.1| DNA replication and repair protein RecF [Zunongwangia profunda
           SM-A87]
          Length = 359

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 166/377 (44%), Gaps = 36/377 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYADVT 65
           +K L++  ++N  S    FD +    VG NGVGKTN+L++I  L+ G+  F   +  ++ 
Sbjct: 3   LKHLSLLNYKNLESSSFDFDPKINCMVGHNGVGKTNVLDSIYHLAFGKSYFNPITSQNIN 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI--S 123
                 FF      E  +    I +  +    + ++  Q      +  +++++H+    +
Sbjct: 63  H--EADFFVVDGTFEKNDKEEQILVSAKRGQKKVIKRNQ------KPYEKVSEHIGFIPA 114

Query: 124 WLVPSMDR--IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGY 177
            ++   DR  I  G S  RR+F+D ++   D  +   +I++ +++  RN LL        
Sbjct: 115 VIISPADRDLIIEG-SETRRKFMDGVISQSDSGYLNDLINYSKIVSQRNSLLKYFAANHT 173

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQ-KENFPHIKLSLTGFLDGK 235
           FD         Q+ +LG K+   RV+ +     +  + Y +   N   + +     L  K
Sbjct: 174 FDRDTLEVYNLQLNDLGTKLYKKRVDFLQEFVPIFNKRYAEITNNKEPVSIEYKSQLSHK 233

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
                       +K L D  + D + + T +G H+ DL  +     I    GS G+QK  
Sbjct: 234 ----------TLSKLLEDQLQKDMVLQYTSVGTHKDDLSFEIEGHPIK-KFGSQGQQKSF 282

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTD--- 351
           LV + LA    I   +G  PILLLD++   LDE +   +  +V T+   QIF++ T    
Sbjct: 283 LVALKLAQFDFIKKISGVNPILLLDDVFDKLDEQRVAHIVALVATNELGQIFISDTHAER 342

Query: 352 -KSVFDSLNETAKFMRI 367
            + V    N+T K  ++
Sbjct: 343 TEKVVKESNQTYKIFKL 359


>gi|194363781|ref|YP_002026391.1| recombination protein F [Stenotrophomonas maltophilia R551-3]
 gi|226737839|sp|B4SR07|RECF_STRM5 RecName: Full=DNA replication and repair protein recF
 gi|194346585|gb|ACF49708.1| DNA replication and repair protein RecF [Stenotrophomonas
           maltophilia R551-3]
          Length = 364

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 150/361 (41%), Gaps = 9/361 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + + R + ++ L       +  GDNG GKT+ILEA+  ++ GR FR      +
Sbjct: 1   MQIRRLALHQLRRFNAVELSPQPGLNLLTGDNGAGKTSILEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  +        E          K   R        +++   +  +  L   L +  
Sbjct: 61  VRQGQEALEIFVEWDEQRASHPPHRRKAGLRHSGQDWKGRLDGEDVAQLGNLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G   S    
Sbjct: 121 FEPGSHALVSGGGEPRRRFLDWGLFHVEPDFLSLWRRYSRALKQRNALLKQG-GPSRMLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R   +  L    +  +  E  P +     G    +    +   +
Sbjct: 180 TWDHELAEAGEPLTSRRQHYLERLQQRTVA-LAAELAPQL-----GIQAMELSPGWRRHE 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T +GPHR+D  VD+ +     A  S G+ K+  +   LA A
Sbjct: 234 LPLADALLLARERDRQAGYTSVGPHRADWSVDFHNIPGRDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
              +   G  P++ LD++++ LD   +  +   +    +QIF+T T+  +    L   A+
Sbjct: 293 EDYAEQRGEWPVIALDDLASELDRTHQARVLERLLGGPAQIFVTATETPAALQELTHIAR 352

Query: 364 F 364
           F
Sbjct: 353 F 353


>gi|315107495|gb|EFT79471.1| recombination protein F [Propionibacterium acnes HL030PA1]
          Length = 401

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 168/370 (45%), Gaps = 28/370 (7%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVEHLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL        + 
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231
           G    +     + ++A +G ++  AR++ ++A+  L      +E  P   L+   +    
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTI 244

Query: 232 -LDGKF------DQSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDK 280
            L+G +      + S    ++E A +  D    R+ D + R  TL+GP R D+I+ +  +
Sbjct: 245 DLEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V  
Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362

Query: 341 IGSQIFMTGT 350
              Q+ +T  
Sbjct: 363 -ADQVLVTAA 371


>gi|152963976|ref|YP_001359760.1| DNA replication and repair protein RecF [Kineococcus radiotolerans
           SRS30216]
 gi|189039627|sp|A6W3V7|RECF_KINRD RecName: Full=DNA replication and repair protein recF
 gi|151358493|gb|ABS01496.1| DNA replication and repair protein RecF [Kineococcus radiotolerans
           SRS30216]
          Length = 391

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 162/370 (43%), Gaps = 35/370 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ ++R+Y +L L      T FVG NG GKTN++EAI +++     R +  A +
Sbjct: 1   MHVAHLSLVDYRSYPTLELDLRPGTTTFVGLNGQGKTNLVEAIGYVATLGSHRVSGDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+        R +   G     ++LE    ++ R  ++N   +R   ++   LR   
Sbjct: 61  VRQGA---ERAVVRAQLERGGRRALVELEITPGKANRA-RLNGNPVRRTRDVLGVLRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY 177
             P    +  G   ERRR+LD ++    PR      D++R++R R  LL         G 
Sbjct: 117 FAPEDLALVKGDPGERRRYLDELLVTRWPRIAGVRADYDRILRQRTALLKSAGSAMRSGR 176

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI-------------MEYVQKENFPHI 224
            D+      +  +A  G ++  AR+ ++  L S               +E   + + P +
Sbjct: 177 ADTHTLDVWDEHLATTGAELLSARLALLADLRSPTDSAYRAVSGGQGDLELGYRSSLPLL 236

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
              +     G+   +  AL+E     + + RK +      L+GPHR DL++         
Sbjct: 237 AEGVATTPGGEA-PTRDALREALLASMLEQRKSELDRGVCLVGPHRDDLVLTLGGMPAK- 294

Query: 285 AHGSTGEQKVVLVGIFLAHARL------ISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            + S GE   V +G+ LA  RL      + +  G  P+L+LD++ A LD  +R  L  +V
Sbjct: 295 GYASHGESWSVALGLRLASYRLLLADDEVDDPGG--PVLVLDDVFAELDAGRRERLSEVV 352

Query: 339 TDIGSQIFMT 348
            D   Q+ +T
Sbjct: 353 ADA-EQVLVT 361


>gi|50083300|ref|YP_044810.1| recombination protein F [Acinetobacter sp. ADP1]
 gi|81827570|sp|Q6FG19|RECF_ACIAD RecName: Full=DNA replication and repair protein recF
 gi|49529276|emb|CAG66988.1| DNA replication, recombinaison and repair protein [Acinetobacter
           sp. ADP1]
          Length = 358

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 156/358 (43%), Gaps = 39/358 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASY 61
           ++I  LNI   RN  ++ L       IF G NG GKT+ILEA+  L+ GR FR      Y
Sbjct: 1   MQITRLNIERVRNLKAVALSGLQPFNIFYGANGSGKTSILEAVHLLATGRSFRTHMPKHY 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                  +  F  + +   GM+ L               + +++N   +    +L K L 
Sbjct: 61  IQQNAQDAIIFAQSLSEKIGMQKLLS-----------GEQLIKVNGDTVATQGQLAKLLP 109

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDS 180
           +  L P    I    +  RR+ LD ++F ++P        + R ++ RN LL T+     
Sbjct: 110 LQHLDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNMLLKTKRQLSL 169

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFD 237
           +        ++E G  ++  R+  +        + +  +  P +++ L    GF      
Sbjct: 170 AELEPWNKMLSEYGEMLHSQRLVTVERWKDFFQQDL-AQLLPDLQIELEYSPGF------ 222

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL----IVDYCDKAITIAHGSTGEQK 293
            S   L ++    L +    D   R T  GPHR+DL     +   D  +     S G++K
Sbjct: 223 HSEVGLWQD----LLNYHNKDVERRYTEYGPHRADLRLKTALGDADDVL-----SRGQKK 273

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           ++++ + L+   ++ + +    ++LLD+++A LD + +  L   ++ +GSQ+F+T  D
Sbjct: 274 LLMMALKLSQIAML-HASNKETVVLLDDLTAELDSNAQRRLIERLSQLGSQVFITTLD 330


>gi|238797843|ref|ZP_04641335.1| DNA replication and repair protein recF [Yersinia mollaretii ATCC
           43969]
 gi|238718259|gb|EEQ10083.1| DNA replication and repair protein recF [Yersinia mollaretii ATCC
           43969]
          Length = 361

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 154/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     RV+  E  + + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  AEFV-LHGRVDVNERESSVGLSKSRQGDSKVR---IDGTDGHKVAELAQMLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +     + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRPWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I         P   LS + F  G   +S      +Y +
Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T IGPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFERDRALTYTAIGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+ 
Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVTDMVGEKGKMFRVE 351

Query: 369 N 369
           +
Sbjct: 352 H 352


>gi|251791866|ref|YP_003006586.1| recombination protein F [Aggregatibacter aphrophilus NJ8700]
 gi|247533253|gb|ACS96499.1| DNA replication and repair protein RecF [Aggregatibacter
           aphrophilus NJ8700]
          Length = 358

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 160/359 (44%), Gaps = 23/359 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN  ++ L +D      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLTVENFRNLQAVDLEWDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDQPH-FTLFGQIQEQQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F              RL++ RN  L +    SS+  
Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVSFYNLWASLSRLLKQRNAALQQ---VSSYQQ 173

Query: 185 S--IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + ++ +L  ++++ R E   AL   I E   +   P + +S++     + DQ+   
Sbjct: 174 MKIWDVELVKLAEQVSLLRAEYAQALQPEI-EQTCRLFLPELDISVSFHQGWEKDQN--- 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301
               YA+ L    + D     T+ GP ++D    +    + +    S G+ K+++  + L
Sbjct: 230 ----YAELLARNFERDRTLGYTVSGPQKADF--RFKANGLPVEDILSRGQLKLLMCALRL 283

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           A    +        I L+D+ ++ LD+ KR+ L   + + GSQ+F+T   +   + LNE
Sbjct: 284 AQGEHLMQQKQRHCIFLIDDFASELDQTKRSLLAERLQNSGSQVFVTAITQ---NQLNE 339


>gi|318608023|emb|CBY29521.1| DNA recombination and repair protein RecF [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 361

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 155/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     RV+  E  + + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  AEFV-LHGRVDANERESSVGLSKSRQGDTRVR---IDGTDGHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +   + + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I         P   LS + F  G   +S      +Y +
Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T +GPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+ 
Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351

Query: 369 N 369
           +
Sbjct: 352 H 352


>gi|238897210|ref|YP_002921958.1| recombination protein F [Klebsiella pneumoniae NTUH-K2044]
 gi|238549540|dbj|BAH65891.1| recombination protein F [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 357

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 156/361 (43%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEHADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  DAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +        + +RL++ RN  L +     +     + +
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLRPWDLE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E   A+   + +  Q +  P   L+ + F  G   ++      +YA+
Sbjct: 181 LIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFS-FQRGWEKET------DYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    ++ 
Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  ++ +K  R+ 
Sbjct: 292 VSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 K 352


>gi|218245953|ref|YP_002371324.1| recombination protein F [Cyanothece sp. PCC 8801]
 gi|257059001|ref|YP_003136889.1| recombination protein F [Cyanothece sp. PCC 8802]
 gi|226737787|sp|B7K127|RECF_CYAP8 RecName: Full=DNA replication and repair protein recF
 gi|218166431|gb|ACK65168.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 8801]
 gi|256589167|gb|ACV00054.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 8802]
          Length = 380

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 183/384 (47%), Gaps = 58/384 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++S FRNY   ++ FD Q TI +G+N  GK+N+LEA+  L+  +  R     D   
Sbjct: 3   LKTLHLSAFRNYREQQIEFDHQKTILLGNNAQGKSNVLEAVELLATLKSHRTNRDRDFIL 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  +     A++E   G +D++I L +   R+   L +N       + L +HL     +
Sbjct: 63  EGE-TIGQITAKIERNYGTSDLAITLRSPGRRT---LTLNH------EHLRRHLE---FL 109

Query: 127 PSMDRI-FSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--- 174
            S++ + FS L ++        RR +LD ++  ++P +   +  + +++R RN LL    
Sbjct: 110 GSLNAVQFSSLDLDLVRGSPDARRNWLDTLLVQLEPIYAHILQQYYQVLRQRNALLKDLR 169

Query: 175 -----EGYFD--SSWCSSI---EAQMAELGVKINIARVEMINALSSLI----------ME 214
                EG  D  S+  + +   + Q+AE G ++   R  +I  L  L            E
Sbjct: 170 KTATEEGKSDHLSAQMTQLHLWDQQLAETGSRVTRRRARVIERLIPLAQIWHQNISGGQE 229

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
            +Q +  P++       L+    Q+F A       K+   R  +     T++GPHR D  
Sbjct: 230 ILQIDYLPNVSWQEDEPLE--VQQAFLA-------KIEQRRLAEQQLGTTVVGPHRDD-- 278

Query: 275 VDYC-DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
           V++  +     ++GS G+Q+ +++ + LA  +LI    G  P+LLLD++ A LD +++N 
Sbjct: 279 VEFTINGTPAKSYGSQGQQRTLVLALKLAELKLIEEVIGEPPLLLLDDVLAELDPNRQNQ 338

Query: 334 LFRIVTDIGSQIFMTGTDKSVFDS 357
           L  ++     Q F+T T    FD+
Sbjct: 339 LLEVIQG-RFQTFITTTYLHSFDA 361


>gi|260774539|ref|ZP_05883452.1| DNA recombination and repair protein RecF [Vibrio metschnikovii CIP
           69.14]
 gi|260610445|gb|EEX35651.1| DNA recombination and repair protein RecF [Vibrio metschnikovii CIP
           69.14]
          Length = 359

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 161/365 (44%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN  +  +   +     +G NG GKT++LEAI  L  GR F+ +    V +   
Sbjct: 6   LVVQQFRNIKACDMTLSSGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNEC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  SELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +    +RR F+D  VF   P        F+RL + RN LL   + Y + S+   
Sbjct: 121 EGFELLTDGPKQRRAFIDWGVFHSQPAFFDAWGRFKRLNKQRNALLKTAKSYREISYWDQ 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             AQ+AE   +I+  R   +  +   + E + +   P   +SLT +  G   Q+      
Sbjct: 181 ELAQLAE---QIDQWRQIYVEHMKK-VAEALCQSFLPEFSISLT-YYRGWDKQT------ 229

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            Y + L +    D +   T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 230 PYKEILQNNFARDQLLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D +   +K 
Sbjct: 289 HLTELTGKQCIYLIDDFASELDSQRRQRLADCLKATGAQVFVSSITESQVTDMIEPNSKM 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|229843949|ref|ZP_04464090.1| recombination protein F [Haemophilus influenzae 6P18H1]
 gi|229812943|gb|EEP48631.1| recombination protein F [Haemophilus influenzae 6P18H1]
          Length = 359

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 162/367 (44%), Gaps = 17/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++      F Q +    
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +Y + L    + D     T  GP ++D    +  + + +    S G+ K+++  + LA 
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
              +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  
Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 345

Query: 363 KFMRISN 369
           K   + N
Sbjct: 346 KMFSVHN 352


>gi|229846049|ref|ZP_04466161.1| recombination protein F [Haemophilus influenzae 7P49H1]
 gi|229811053|gb|EEP46770.1| recombination protein F [Haemophilus influenzae 7P49H1]
          Length = 359

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 162/367 (44%), Gaps = 17/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    I ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGKIQESQHQWSIGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I E   +   P ++++++      F Q +    
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEI-EQTCRLFLPELEINVS------FHQGW-EKN 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +Y + L    + D     T  GP ++D    +  + + +    S G+ K+++  + LA 
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
              +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  
Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 345

Query: 363 KFMRISN 369
           K   + N
Sbjct: 346 KMFSVHN 352


>gi|312882233|ref|ZP_07741979.1| recombination protein F [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370077|gb|EFP97583.1| recombination protein F [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 360

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 160/365 (43%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V + G 
Sbjct: 6   LIIQQFRNIKACDIELSAGFNFLIGVNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNGC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSS 185
               + +     RR F+D  VF  +         F+RL + RN LL     Y + S+  +
Sbjct: 121 EGFDLLTEGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTARHYHELSYWDN 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             A +AE   +   A VE +   +  I         P   + L+ +   + +  +    +
Sbjct: 181 EMAVLAENISQWREAYVEQMKKKAQQICGAF----LPEFDIQLSYYRGWEKETPY----Q 232

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  K  F+    D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 233 EILKNNFE---RDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            +++ TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  TD+ + D  +E  K 
Sbjct: 289 HLTDVTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDQQIADMRDENGKM 348

Query: 365 MRISN 369
            R+ +
Sbjct: 349 FRVEH 353


>gi|71275532|ref|ZP_00651818.1| RecF protein [Xylella fastidiosa Dixon]
 gi|71900179|ref|ZP_00682319.1| RecF protein [Xylella fastidiosa Ann-1]
 gi|170729254|ref|YP_001774687.1| recombination protein F [Xylella fastidiosa M12]
 gi|226737850|sp|B0U1G7|RECF_XYLFM RecName: Full=DNA replication and repair protein recF
 gi|71163832|gb|EAO13548.1| RecF protein [Xylella fastidiosa Dixon]
 gi|71730068|gb|EAO32159.1| RecF protein [Xylella fastidiosa Ann-1]
 gi|167964047|gb|ACA11057.1| DNA replication and repair RecF protein [Xylella fastidiosa M12]
          Length = 364

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 154/333 (46%), Gaps = 31/333 (9%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADI- 88
             F+G+NG GKT++LEA+  +  GR FR      + R GS          E +E   D  
Sbjct: 26  NFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGLIRHGS----------ENLEIFVDWQ 75

Query: 89  -SIKLETRDDRSVRCLQINDVVIRVVDELNKHLR--------ISWLVPSMDRIFSGLSME 139
            +  +  R  R+       + + R+  +   HL         I++   S   I S   + 
Sbjct: 76  ETALINARRHRAGLSHYGQEWIGRLDGQKIIHLASLCAALAVITFESSSYQLINSNAEL- 134

Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199
           RRRFLD  +F ++P        +  +++ RN LL +   + +   + + +++E+G ++  
Sbjct: 135 RRRFLDWGLFHVEPDFLDLWRCYTHVLKQRNSLLKQKE-ELAMLEAWDQKLSEVGEQLTF 193

Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            R + +  L   ++  + +   P++K+   GF    F+  +   +      LF  R+ D 
Sbjct: 194 RRFQYLERLKQRVIPLISRIT-PNLKIH--GF---NFNHGWRRHELPLIDALFISRERDY 247

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILL 318
               T +GPHRSD    +   +I   H  S G+ K++ +   LA A+   +  G  PIL 
Sbjct: 248 QYGYTSLGPHRSDWTPQF--SSIPGVHVLSRGQGKLITLMCLLAQAQDFFDQRGEWPILS 305

Query: 319 LDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           LD++++ LD+  +  +  ++ +I +Q+ +TGT+
Sbjct: 306 LDDLASELDQKHQWRVLEMLAEIPAQVLITGTE 338


>gi|183597170|ref|ZP_02958663.1| hypothetical protein PROSTU_00413 [Providencia stuartii ATCC 25827]
 gi|188023484|gb|EDU61524.1| hypothetical protein PROSTU_00413 [Providencia stuartii ATCC 25827]
          Length = 364

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 156/366 (42%), Gaps = 22/366 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         +G NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIEDADLALANGFNFLIGPNGSGKTSVLEAIYTLGHGRAFRSIQANRVIRHEQ 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
             F        ++       + +      D  VR   I+      + EL K L +  + P
Sbjct: 66  AQFILHGKLGHLDASRKALSLGLSKNREGDSKVR---IDGTDGHKIAELAKLLPMQLITP 122

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCS 184
               + +G    RR F+D   F  +P       D +RL++ RN  L +   ++    W  
Sbjct: 123 EGFTLLNGGPKYRRAFIDWGCFHNEPLFFSVWSDLKRLLKQRNAALRQVSRYEQIRHW-- 180

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+A L  +I+  R E I  ++  I +  Q +  P   LS++ F  G +D+      
Sbjct: 181 --DQQLAPLAEQISQWRSEYIAGIAENIEQTCQ-QFLPEFVLSVS-FQRG-WDKEI---- 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y++ L    + D M   T  GPH++DL +      +     S G+ K+++  + LA  
Sbjct: 232 -DYSELLERQFERDKMLTYTASGPHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQG 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
              +  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  T + V D ++  +K
Sbjct: 290 EFFTQQSGQRCLYLLDDFASELDSGRRQLLAARLKATQAQVFVSAITPEQVKDMIDVNSK 349

Query: 364 FMRISN 369
              + +
Sbjct: 350 MFSVEH 355


>gi|262040464|ref|ZP_06013707.1| DNA replication and repair protein RecF [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259042217|gb|EEW43245.1| DNA replication and repair protein RecF [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 357

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 156/361 (43%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEHADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      V EL   + +  + P  
Sbjct: 66  DAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +        + +RL++ RN  L +     +     + +
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLRPWDLE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E   A+   + +  Q +  P   L+ + F  G   ++      +YA+
Sbjct: 181 LIPLAEQISRWRAEYSAAVVEDMADTCQ-QFLPEFTLTFS-FQRGWEKET------DYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    ++ 
Sbjct: 233 VLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  ++ +K  R+ 
Sbjct: 292 VSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 K 352


>gi|317509429|ref|ZP_07967047.1| DNA replication and repair protein RecF [Segniliparus rugosus ATCC
           BAA-974]
 gi|316252258|gb|EFV11710.1| DNA replication and repair protein RecF [Segniliparus rugosus ATCC
           BAA-974]
          Length = 411

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 155/375 (41%), Gaps = 35/375 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++    I +FR++    L      T+F+G NG GKTN++EA+  LS     R A  A +
Sbjct: 1   MRVSSFEIRDFRSWEHASLRLGEGSTLFLGRNGYGKTNLVEALGVLSSLSSHRGAQTAAM 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+  +  +     EG +    +++ L     ++ +  QIN  V R   E+   LR  
Sbjct: 61  VRRGAAEALIAADVLNEGRK----LTVGLRLAPGKATKA-QING-VNRPTREVAGVLRTV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182
           +  P    +  G   ERRRFLD  +    PR      DFER++R R  LL   G      
Sbjct: 115 FFSPEDLALVRGEPGERRRFLDETLVVRQPRMAGVKADFERVLRQRATLLKSLGGGRPGA 174

Query: 183 CSSIEA---------QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
             S EA         Q A     + +AR+ ++ ALS ++       + P +  +   +  
Sbjct: 175 ARSEEARATLEAWDEQFASKAAALTVARISLVRALSPIVKRCYAAID-PSVDDAELRYRT 233

Query: 234 GKFDQSFCALKEEYAK--------------KLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
              D    A  E++                KL + R+ +    + L GPHR DL +    
Sbjct: 234 AGEDDEATAAAEDFPSAEISERHVADSITAKLAEIREEELRRGQCLAGPHRDDLELRIAG 293

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
             +  A  S GE     + + +A   L+    G  P+L+LD++ A LD  +R  +  +  
Sbjct: 294 -GLARAFVSHGEAWSYALALRVAAFELLRG-EGHDPVLVLDDVFAELDGPRREVVAGLAR 351

Query: 340 DIGSQIFMTGTDKSV 354
               Q  +T  D + 
Sbjct: 352 Q-AEQTLITAADPAT 365


>gi|16767121|ref|NP_462736.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167992429|ref|ZP_02573527.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168242055|ref|ZP_02666987.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194445873|ref|YP_002043086.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450242|ref|YP_002047869.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|200387747|ref|ZP_03214359.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|20141706|sp|P24900|RECF_SALTY RecName: Full=DNA replication and repair protein recF
 gi|226737830|sp|B4TAU7|RECF_SALHS RecName: Full=DNA replication and repair protein recF
 gi|226737831|sp|B4SYA6|RECF_SALNS RecName: Full=DNA replication and repair protein recF
 gi|16422409|gb|AAL22695.1| gap repair protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194404536|gb|ACF64758.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408546|gb|ACF68765.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|199604845|gb|EDZ03390.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205329422|gb|EDZ16186.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205338680|gb|EDZ25444.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|261248977|emb|CBG26834.1| recF protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996121|gb|ACY91006.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160369|emb|CBW19894.1| recF protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914966|dbj|BAJ38940.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225554|gb|EFX50609.1| DNA recombination and repair protein RecF [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132197|gb|ADX19627.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332990686|gb|AEF09669.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 357

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 158/362 (43%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++  E    I +  + + D  VR   I+      + EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQSEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E  +A++  + +  Q +  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 TV 350


>gi|314987109|gb|EFT31201.1| recombination protein F [Propionibacterium acnes HL005PA2]
 gi|314990689|gb|EFT34780.1| recombination protein F [Propionibacterium acnes HL005PA3]
          Length = 401

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 168/370 (45%), Gaps = 28/370 (7%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVCADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL        + 
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231
           G    +     + ++A +G ++  AR++ ++A+  L      +E  P   L+   +    
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTI 244

Query: 232 -LDGKF------DQSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDK 280
            L+G +      + S    ++E A +  D    R+ D + R  TL+GP R D+I+ +  +
Sbjct: 245 DLEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V  
Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362

Query: 341 IGSQIFMTGT 350
              Q+ +T  
Sbjct: 363 -ADQVLVTAA 371


>gi|254430013|ref|ZP_05043720.1| RecF/RecN/SMC N terminal domain, putative [Alcanivorax sp. DG881]
 gi|196196182|gb|EDX91141.1| RecF/RecN/SMC N terminal domain, putative [Alcanivorax sp. DG881]
          Length = 369

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 159/351 (45%), Gaps = 31/351 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-SPGRGFRRASYADVTRIG 68
           L +S+FRNY S  +       + +GDNG GKT++LEAI F+ S GR FR    + + R G
Sbjct: 5   LQLSDFRNYGSAEVDLSPSLNVILGDNGSGKTSLLEAIYFIGSGGRSFRGGRLSRLVRDG 64

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           + +  + +A V   E L  + ++   R    +  ++++    + + E+   L +  L P+
Sbjct: 65  AEA-ATLYAEVLAAEELHRLGVR---RTPGGIDAIKLDGQTPKALSEVAALLPVLALHPT 120

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
              +  G S  RRRF+D  +F ++ +           ++ RN LL  G            
Sbjct: 121 SVELVFGSSQLRRRFMDWGMFHVEHQFMPVWRAGSAALKQRNALLRTGRPSQRELGFWNQ 180

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           Q+A+   +I   R   + AL   + E V     P +K+ L         Q+     E Y 
Sbjct: 181 QLAQTSDRIEGLRRSYLAALQRGLDE-VLVVLAPELKIRLR-------LQTGLQKDESYG 232

Query: 249 KKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHG-------STGEQKVVLVGIF 300
           + L D  + D + R  +  G HRSD+ ++        +HG       S G+ K+V  G+ 
Sbjct: 233 QAL-DRLQTDDLRRGFSQAGFHRSDIRIE--------SHGVVARDRLSRGQAKLVAYGMV 283

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           LA   LIS   G    LL+D+++A LDE+ RN L   +   G Q  +T  D
Sbjct: 284 LAQLPLISQ-AGKVCTLLVDDLAAELDEEHRNQLLGYLATTGHQTLITALD 333


>gi|318079376|ref|ZP_07986708.1| recombination protein F [Streptomyces sp. SA3_actF]
          Length = 312

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 122/284 (42%), Gaps = 30/284 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y    +  +   T FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYERAEVSLEPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+      F R    +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRAGA---ERAFVRAAVTQGERSQLVELEINPGRANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARHPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHI---KLSLT 229
              D S     +  +A  G ++   R ++I AL  L+    E +     P +   + S  
Sbjct: 177 RTLDLSTLDIWDQHLARAGAELLARRTDLIAALQPLVDKTYEQLAPGGGPALLEYRPSAP 236

Query: 230 GFLDGK---FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
           G   G+   + Q   AL E         RK +     TL+GPHR
Sbjct: 237 GTAQGREEFYAQLLAALGEV--------RKQEIERGVTLVGPHR 272


>gi|292490173|ref|YP_003525612.1| DNA replication and repair protein RecF [Nitrosococcus halophilus
           Nc4]
 gi|291578768|gb|ADE13225.1| DNA replication and repair protein RecF [Nitrosococcus halophilus
           Nc4]
          Length = 362

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 149/354 (42%), Gaps = 25/354 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L+I  FRN   +         IF G NG GKT++LEAI  L  GR FR +  A V
Sbjct: 1   MHIAHLDIRNFRNLEHIEFYPAKGLNIFTGANGSGKTSLLEAIYLLGLGRSFRSSQLASV 60

Query: 65  TRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+       ARV +  +    + ++  +   R+    +IN   ++   +L   L + 
Sbjct: 61  VR-GNMKSLRVVARVKQTTDAFQIVGVEFSSTGFRA----RINGNAVKRRSQLAAQLPLL 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           ++      I  G    RR++LD  +F ++   R     + R ++ RN  L       SW 
Sbjct: 116 YMSSYSHLILDGGPRYRRQWLDWGLFHLESNFRDLWWRYHRALKQRNHALRTQM--PSWR 173

Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
             I+A   ++A  G ++   R  +++ L   + +         +     G +  +F + +
Sbjct: 174 REIDAWDRELATYGEQVTSFREAILSQLQESVSQLFA------VLAHQVGPVTMEFKRGW 227

Query: 241 C---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
               AL E     L      D  +  T  GPHR+++      K +     S G+QKV   
Sbjct: 228 SRTIALGEVLKATL----DYDRAAGYTRYGPHRAEVAFYASGKDVRDIL-SRGQQKVFCY 282

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + L    L+        I L+D+ ++ LD D R  +  ++  +G Q+F+T  +
Sbjct: 283 SLALGQVELLCKIKEQHCIFLIDDFTSELDADHRRRVLALLNQLGIQVFVTTVE 336


>gi|319949429|ref|ZP_08023490.1| recombination protein F [Dietzia cinnamea P4]
 gi|319436891|gb|EFV91950.1| recombination protein F [Dietzia cinnamea P4]
          Length = 410

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 160/364 (43%), Gaps = 29/364 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++  L L  +   T  +G NG GKTN+LEAI  L+  R  R A  A +
Sbjct: 1   MHLRHLRLLDFRSWPLLELDLEPGVTTLIGRNGHGKTNVLEAIGVLASLRSHRVAGDAPM 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+  +     A   G E    ++++L     ++ R  ++N    R + ++   ++  
Sbjct: 61  IRTGAGTALVGALAHNAGRE----LTVELALNSGKANRA-RLNTSPCRRLSDILGVVQSV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------G 176
              P    +  G   ERRR LD ++    P     + ++  ++R R  LL         G
Sbjct: 116 LFAPEDLALVRGEPAERRRLLDELMVQRRPSLGGDLAEYSSVLRQRTALLKSASGALRRG 175

Query: 177 YFDSSWC-----SSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSL 228
             + S          + ++AELG ++   R++++  L  L+++    +  E+ P   L+ 
Sbjct: 176 RPEESAAVLDTLDVWDGRLAELGARLVAGRIDLLRQLRPLVVDAYRGLAPESRP-AGLAY 234

Query: 229 TGFLDGKFDQSFCALKEEYAKKL---FDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITI 284
              +    D+S     E     L      R+ D + R  +L+GPHR DL++   D+    
Sbjct: 235 RFRVADTPDESELTDPELVEAVLLAELGRRRRDEIDRGMSLVGPHRDDLLLTLGDEPAK- 293

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
              S GE     + + L    L     G  P+LLLD++ A LD  +R AL  +   +  Q
Sbjct: 294 GFASHGETWSFALALRLGSLELF-RADGAEPVLLLDDVFAELDRHRRAALADVAAGV-EQ 351

Query: 345 IFMT 348
           + +T
Sbjct: 352 VLIT 355


>gi|47879|emb|CAA44366.1| recF protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 355

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 157/361 (43%), Gaps = 21/361 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG N  GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGPNASGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++  E    I +  + + D  VR   I+      + ++   + +  + P  
Sbjct: 66  EAFV-LHGRLQSEERETSIGLTKDKQGDSKVR---IDGTDGHKIADVAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLTGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALAQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E  +A++  + +  Q +  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L    + D M   T  GPH++D  +  CD A      S G+ K+++  + LA  + 
Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRM-LCDGAPVEDTLSRGQLKLLMCALRLAQGQF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           ++  +G   + L+D  ++ LD+ +R  L   +    SQ+F++   + V D  +E +K   
Sbjct: 289 LTRESGRC-LYLIDAFASELDDGRRGLLASRLKATQSQVFVSELAEHVIDMSDENSKMFT 347

Query: 367 I 367
           +
Sbjct: 348 V 348


>gi|301154705|emb|CBW14168.1| gap repair protein [Haemophilus parainfluenzae T3T1]
          Length = 360

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 155/346 (44%), Gaps = 16/346 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLIVEKFRNLNAVDLEFDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVANRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                P  F+ F +++  E     S+ L+  R   ++   +IN      + +L   L + 
Sbjct: 61  ISYDEPH-FTLFGQIQ--ESQHQWSVGLQKLRQGNTIA--KINGEDGNKIADLAHLLPMQ 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +G    RR FLD  +F          +   RL++ RN  L++    S+  
Sbjct: 116 LITPEGLTLLNGGPSFRRAFLDWGLFHHHNSFHSSWVALNRLLKQRNAALSQNQPYSA-I 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + ++A+L  +++  R E   AL   I +  Q    P ++++++      F Q +   
Sbjct: 175 KIWDIELAKLAHQVSDWRAEYAEALRPEIEKTCQL-FLPELEITVS------FHQGWEK- 226

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + EY + L    + D     T+ GP ++D         +     S G+ K+++  + LA 
Sbjct: 227 ETEYGELLAQNFERDKAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
              +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T 
Sbjct: 286 GEHLMIQKQRHCIFLIDDFASELDQHKRALLAERLQQSGSQVFVTA 331


>gi|149191878|ref|ZP_01870112.1| recombination protein F [Vibrio shilonii AK1]
 gi|148834270|gb|EDL51273.1| recombination protein F [Vibrio shilonii AK1]
          Length = 360

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 156/365 (42%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN  +  +         +G NG GKT++LEAI  L  GR F+ +    V +   
Sbjct: 6   LIVQQFRNIKACDIELSTGFNFIIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNDC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    I + +  + D S   ++I     + + +L K L +  + P
Sbjct: 66  QELFVHGRFLNSDQFE----IPVGINKQRDGSTE-VKIGGQSGQKLAQLAKVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSS 185
               + +     RR F+D  VF  +P        F+RL + RN LL     Y + S+   
Sbjct: 121 EGFELLTDGPKFRRAFIDWGVFHSEPGFHEAWGRFKRLSKQRNALLKTATSYRELSYWDR 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             AQ+AE   +I+  R   +  +  L  E  Q    P  ++ L  +   + D  +  L E
Sbjct: 181 DLAQLAE---QIDDWRRCYVEQMQPLAEEMCQS-FLPEFEIKLGYYRGWEKDTPYAELLE 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
              ++       D     T  GP+++DL +   +  +     S G+ K+++  + LA  +
Sbjct: 237 RNFER-------DQSLGYTFSGPNKADLRIKVNNTPVEDVL-SRGQLKLMMCALRLAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   +    +Q+F++  T   V D ++E  K 
Sbjct: 289 HLAELTGKQCIYLIDDFASELDSLRRKRLADYLKQTNAQVFVSSITQSQVADMIDENGKM 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|254773056|ref|ZP_05214572.1| recombination protein F [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 385

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 29/340 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A   L      T+F+G NG GKTN+LEA+ + S     R  + A + R
Sbjct: 3   VRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    +G E     ++ LE    R+ +  ++N   +R   E+   LR    
Sbjct: 63  AGADRAVVSTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   ERRR+LD +     P       D+++++R R  LL            
Sbjct: 118 APEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---L 232
           G  D+      ++++AE G ++  AR++++N L+  + E   +   P  + +  G+   L
Sbjct: 178 GALDT--LDVWDSRLAEYGAQLMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSL 234

Query: 233 DGKFDQSFCALKEEY----AKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHG 287
                    A   +Y           R+   M R   L+GPHR DL + +  + +     
Sbjct: 235 GAAASAEVNAGDRDYLEAALLAGLAARRDAEMERGMCLVGPHRDDLEL-WLGERVPKGFA 293

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 294 SHGESWSLALSLRLAAYELLRADES-DPVLLLDDVFAELD 332


>gi|325577773|ref|ZP_08148048.1| recombination protein F [Haemophilus parainfluenzae ATCC 33392]
 gi|325160518|gb|EGC72644.1| recombination protein F [Haemophilus parainfluenzae ATCC 33392]
          Length = 360

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 161/364 (44%), Gaps = 15/364 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLIVEKFRNLNAVDLEFDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++ + R   ++   +IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGQIQESQHQWAVGLQ-KLRQGNTIA--KINGEDGNKIADLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F          +   RL++ RN  L++    S+   
Sbjct: 117 ITPEGLTLLNGGPSFRRAFLDWGLFHHHNSFHSSWVALNRLLKQRNAALSQNQPYST-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++      F Q +   +
Sbjct: 176 IWDIELAKLAHQVSDWRAEYAEALRPEIEKTCQL-FLPELEITVS------FHQGW-EKE 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EY + L    + D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 TEYGELLAQNFERDKAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
             +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T   +     +  E  K
Sbjct: 287 EHLMIQKQRHCIFLIDDFASELDQHKRALLAERLQQSGSQVFVTAITQGQLKEMQVEKGK 346

Query: 364 FMRI 367
             ++
Sbjct: 347 LFQV 350


>gi|291543408|emb|CBL16517.1| recF protein [Ruminococcus sp. 18P13]
          Length = 370

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 158/371 (42%), Gaps = 50/371 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L    FRN   ++L  D ++ + VG N  GKTN+LEAI  L+  R FR     D+     
Sbjct: 6   LEAEHFRNLEHIQLEPDPRYNLIVGQNAQGKTNLLEAIWLLTGCRSFRGVRERDLV---- 61

Query: 70  PSFFSTFARVEGM------EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            SF     R++        E     +I+  +R+ +    + +N V +R    L    +  
Sbjct: 62  -SFDQEVMRMQAAFRDSRREQHITYAIQKSSREKK----ITLNGVPLRGGSRLFAQFQCV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    +  GL  +RR FLD     I P++   +  FE L   RN++L          
Sbjct: 117 VFTPDDTMLIKGLPDKRRNFLDLCCAQIRPKNMDVLRRFENLTIQRNQVL---------- 166

Query: 184 SSIEA-QMAELGVKINIARVEMINA-LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
            SI A     L + I  A++ +  A LS +   YVQ+  F  +   L   + G  +Q   
Sbjct: 167 RSIGAGNGTPLDLAIWDAQLAVAGAHLSHIRHSYVQR--FAPVCARLYNIITGGREQLTV 224

Query: 242 ------------------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
                              +++ Y +KL      D     T IG  R DL+     K + 
Sbjct: 225 EYQSGMYRDYEMPETVTEPMQDYYLRKLTMSSTDDIRLGYTSIGASRDDLLFKINGKPVR 284

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
              GS G++K   + + LA A +  ++ G +P++LLD++   LD+ ++  ++ IV ++  
Sbjct: 285 -DFGSQGQKKSTALVLKLAQAEIYRHSQGQSPVVLLDDVMGELDKSRQELVYSIVQEM-- 341

Query: 344 QIFMTGTDKSV 354
           Q+F+T  ++  
Sbjct: 342 QVFITTCNEGA 352


>gi|168235475|ref|ZP_02660533.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737823|ref|YP_002116780.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|226737833|sp|B4TN05|RECF_SALSV RecName: Full=DNA replication and repair protein recF
 gi|194713325|gb|ACF92546.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291440|gb|EDY30792.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 357

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 158/364 (43%), Gaps = 21/364 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      + EL   + +  + P  
Sbjct: 66  EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E   A++  + +  Q +  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSIAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSVISAEHVIDMSDENSKMF 348

Query: 366 RISN 369
            +  
Sbjct: 349 TVEK 352


>gi|257470422|ref|ZP_05634513.1| RECF protein [Fusobacterium ulcerans ATCC 49185]
 gi|317064630|ref|ZP_07929115.1| DNA replication and repair protein recF [Fusobacterium ulcerans
           ATCC 49185]
 gi|313690306|gb|EFS27141.1| DNA replication and repair protein recF [Fusobacterium ulcerans
           ATCC 49185]
          Length = 375

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 156/360 (43%), Gaps = 42/360 (11%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           +N   FRN     + F  +  +F G NG GKT++LEA+ F S G+ FR    +++ + G 
Sbjct: 6   INYVNFRNLQDGNVKFFPKLNLFYGKNGQGKTSLLEALYFNSTGKSFRTNKSSEMMKYGY 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                 +   +   G   +++K    D +       N   ++  DE    L +   +P  
Sbjct: 66  KR-TGVYVVYKDNIGEKTLTVKFNNEDKKE---YSYNGKKVQ-YDEFYGKLNVVTYIPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR F D  +      + + + +F ++++ RN+ L E        +  + +
Sbjct: 121 IVLITGSPSVRRNFFDGEIAQTSSEYFQELKNFNKILKIRNKYLKEKKHKEPEFAIYQDE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
             + G K+   R+E +  +S ++       N  + KL    F D K       L  +Y  
Sbjct: 181 FVKYGAKVIEKRMEYVKKISIIL-------NLNYRKL----FDDKK------ELSLQYQC 223

Query: 250 KLFDGRKM------DSMSRR-------------TLIGPHRSDLIVDYCDKAITIAHGSTG 290
            L + +KM      D++ +R             +L GP + D +  + +     +  S G
Sbjct: 224 HLGNVKKMTLKEIEDALRKRIEEKLGQELRYGFSLSGPQKDDFLF-FLNSYEAKSTASQG 282

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           E+K ++  + L+   ++      +PIL++D+IS++ D ++++++   +     Q+F++ T
Sbjct: 283 EKKSIIFSLKLSEIDMVLREKKESPILIIDDISSYFDSNRKDSILNYLEKRNIQVFISST 342


>gi|309807875|ref|ZP_07701807.1| putative recombination protein F [Lactobacillus iners LactinV
           01V1-a]
 gi|308168977|gb|EFO71063.1| putative recombination protein F [Lactobacillus iners LactinV
           01V1-a]
          Length = 347

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 149/334 (44%), Gaps = 31/334 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++ +   
Sbjct: 6   LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    A + G     +I   L+       +   IN +  + +      +      P  
Sbjct: 63  --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D     I+  +   +  + ++++ RN  L    ++   D  + + 
Sbjct: 121 LSLIKGSPAFRRRFMDLEFGQINAEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242
           +  Q+A L  ++   RV  ++ L         KEN       ++     LD ++  SF  
Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQKEILDIEYKASFPE 231

Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             E+      Y K L  F+  K++ M    TL+GPHR DL V + +K     + S G+Q+
Sbjct: 232 FDEKDSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQR 290

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
            +++ I LA   L+       PILLLD++ + LD
Sbjct: 291 SIVLSIKLAEIDLMHQILNEYPILLLDDVMSELD 324


>gi|149912066|ref|ZP_01900657.1| recombination protein F [Moritella sp. PE36]
 gi|149804862|gb|EDM64899.1| recombination protein F [Moritella sp. PE36]
          Length = 361

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 160/361 (44%), Gaps = 35/361 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LN ++FRN     +   A   I +GDNG GK+++LEAI +L  GR FR    + V + G 
Sbjct: 6   LNFTDFRNIKQASMQPGAGINIILGDNGSGKSSVLEAIHYLGLGRSFRTHLTSRVVQHGE 65

Query: 70  PSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
             F  FS   +    + +  I +K     D     L+I       + EL   L +  + P
Sbjct: 66  KDFTLFSQCQQRLNDDRITTIGLKKSKNSDTE---LKIAGQKAERLAELPGILPLQLIHP 122

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSS 185
               + S     RR+F+D  VF ++           RL++ RN +L  G  Y + ++   
Sbjct: 123 ESFTLLSSGPKLRRQFVDWGVFHLETEFFATWAKLTRLLKQRNAILKSGKRYAELAYWDK 182

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL-----DGKFDQSF 240
                 E  V+  I        ++ +   Y+++ N P IK +L  FL     D ++ Q +
Sbjct: 183 ------EFAVQGTI--------IAQMRRRYLEQLN-PIIKSALADFLPEYDFDIRYHQGW 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHG--STGEQKVVLV 297
            +   E A  L      D     T +GP ++D+ +    +A  + AH   S G+ K+ + 
Sbjct: 228 DS-DIELAALLKQNFMRDQQLGYTSLGPQKADIRI----RANGVPAHDILSRGQLKLAVC 282

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + L+    +S  +      L+D+ S+ LD+ KR  L + + +  +Q+F+T  DKS   +
Sbjct: 283 AMRLSQGLFLSQHSNKRCTFLIDDFSSELDDSKRKLLAQYLIESKAQVFVTAIDKSQVTA 342

Query: 358 L 358
           L
Sbjct: 343 L 343


>gi|148826361|ref|YP_001291114.1| recombination protein F [Haemophilus influenzae PittEE]
 gi|148716521|gb|ABQ98731.1| recombination protein F [Haemophilus influenzae PittEE]
          Length = 360

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 155/352 (44%), Gaps = 22/352 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 10  MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 69

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 70  ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 125

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 126 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSAIKI 185

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           W    + ++A+   +++  R E   AL   I +  Q    P ++++++      F Q + 
Sbjct: 186 W----DVELAKFAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW- 233

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIF 300
               +Y + L    + D     T  GP ++D    +  + + +    S G+ K+++  + 
Sbjct: 234 EKNADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALR 291

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           LA    +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T   K
Sbjct: 292 LAQGEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITK 343


>gi|295129533|ref|YP_003580196.1| DNA recombination and repair protein RecF [Propionibacterium acnes
           SK137]
 gi|291377073|gb|ADE00928.1| DNA recombination and repair protein RecF [Propionibacterium acnes
           SK137]
 gi|313771063|gb|EFS37029.1| recombination protein F [Propionibacterium acnes HL074PA1]
 gi|313806859|gb|EFS45357.1| recombination protein F [Propionibacterium acnes HL087PA2]
 gi|313811772|gb|EFS49486.1| recombination protein F [Propionibacterium acnes HL083PA1]
 gi|313814218|gb|EFS51932.1| recombination protein F [Propionibacterium acnes HL025PA1]
 gi|313817646|gb|EFS55360.1| recombination protein F [Propionibacterium acnes HL046PA2]
 gi|313821529|gb|EFS59243.1| recombination protein F [Propionibacterium acnes HL036PA1]
 gi|313824527|gb|EFS62241.1| recombination protein F [Propionibacterium acnes HL036PA2]
 gi|313826196|gb|EFS63910.1| recombination protein F [Propionibacterium acnes HL063PA1]
 gi|313832306|gb|EFS70020.1| recombination protein F [Propionibacterium acnes HL007PA1]
 gi|313832766|gb|EFS70480.1| recombination protein F [Propionibacterium acnes HL056PA1]
 gi|314926330|gb|EFS90161.1| recombination protein F [Propionibacterium acnes HL036PA3]
 gi|314961666|gb|EFT05767.1| recombination protein F [Propionibacterium acnes HL002PA2]
 gi|314969080|gb|EFT13178.1| recombination protein F [Propionibacterium acnes HL037PA1]
 gi|314975201|gb|EFT19296.1| recombination protein F [Propionibacterium acnes HL053PA1]
 gi|314977614|gb|EFT21709.1| recombination protein F [Propionibacterium acnes HL045PA1]
 gi|314980254|gb|EFT24348.1| recombination protein F [Propionibacterium acnes HL072PA2]
 gi|314985200|gb|EFT29292.1| recombination protein F [Propionibacterium acnes HL005PA1]
 gi|315081494|gb|EFT53470.1| recombination protein F [Propionibacterium acnes HL078PA1]
 gi|315083083|gb|EFT55059.1| recombination protein F [Propionibacterium acnes HL027PA2]
 gi|315086616|gb|EFT58592.1| recombination protein F [Propionibacterium acnes HL002PA3]
 gi|315088018|gb|EFT59994.1| recombination protein F [Propionibacterium acnes HL072PA1]
 gi|315097159|gb|EFT69135.1| recombination protein F [Propionibacterium acnes HL038PA1]
 gi|315109863|gb|EFT81839.1| recombination protein F [Propionibacterium acnes HL030PA2]
 gi|327332503|gb|EGE74238.1| RecF protein [Propionibacterium acnes HL096PA2]
 gi|327333676|gb|EGE75393.1| RecF protein [Propionibacterium acnes HL096PA3]
 gi|327444466|gb|EGE91120.1| recombination protein F [Propionibacterium acnes HL013PA2]
 gi|327446720|gb|EGE93374.1| recombination protein F [Propionibacterium acnes HL043PA2]
 gi|327448838|gb|EGE95492.1| recombination protein F [Propionibacterium acnes HL043PA1]
 gi|328757973|gb|EGF71589.1| recombination protein F [Propionibacterium acnes HL020PA1]
 gi|328759814|gb|EGF73405.1| RecF protein [Propionibacterium acnes HL099PA1]
          Length = 401

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 168/370 (45%), Gaps = 28/370 (7%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL        + 
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231
           G    +     + ++A +G ++  AR++ ++A+  L      +E  P   L+   +    
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTI 244

Query: 232 -LDGKF------DQSFCALKEEYAKKLFD---GRKMDSMSRR-TLIGPHRSDLIVDYCDK 280
            L+G +      + S    ++E A +  D    R+ D + R  TL+GP R D+I+ +  +
Sbjct: 245 DLEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V  
Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362

Query: 341 IGSQIFMTGT 350
              Q+ +T  
Sbjct: 363 -ADQVLVTAA 371


>gi|254818681|ref|ZP_05223682.1| recombination protein F [Mycobacterium intracellulare ATCC 13950]
          Length = 385

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 154/360 (42%), Gaps = 24/360 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A   L      T+F+G NG GKTN+LEA+ + S     R  + A + R
Sbjct: 3   VRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    +G E     ++ LE    R+ +  ++N   +R   E+   LR    
Sbjct: 63  AGAARAVVSTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEGYFDS 180
            P    +  G   ERRR+LD +     P       D+E+++R R  LL          D 
Sbjct: 118 APEDLALVRGDPSERRRYLDDLATLRRPAVAAVRADYEKVLRQRTALLKSLSGARYRGDH 177

Query: 181 SWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGK 235
           S   ++   ++++AE G ++  AR+++ N L+  + +  Q          +S    L   
Sbjct: 178 SALDTLDVWDSRLAEHGAELMSARIDLANQLTPEVEKAYQLLAPGSRAASISYRSSLGAD 237

Query: 236 FDQSFCALKEEY----AKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                     E+           R+   + R   L+GPHR DL +   D+       S G
Sbjct: 238 AAADIAGGDREFLEAALLAALAERRSAELERGMCLVGPHRDDLELWLGDQPAK-GFASHG 296

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           E     + + LA   L+       P+LLLD++ A LD  +R AL   V +   Q+ +T  
Sbjct: 297 ESWSFALALRLAAYELLRADES-DPVLLLDDVFAELDATRRRALA-TVAESAEQVLVTAA 354


>gi|123444340|ref|YP_001008305.1| recombination protein F [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166221878|sp|A1JT78|RECF_YERE8 RecName: Full=DNA replication and repair protein recF
 gi|122091301|emb|CAL14187.1| DNA metabolism protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 361

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 154/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     RV+  E  + + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  AEFV-LHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +   + + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I         P   LS + F  G   +S      +Y +
Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L      D     T +GPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFVRDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+ 
Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGKMFRVE 351

Query: 369 N 369
           +
Sbjct: 352 H 352


>gi|297616217|ref|YP_003701376.1| DNA replication and repair protein RecF [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144054|gb|ADI00811.1| DNA replication and repair protein RecF [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 368

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 152/366 (41%), Gaps = 37/366 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L    FRN  S  +   ++  + +G N  GKTN+LEAI  +   R FR A   D+
Sbjct: 1   MKILKLETRFFRNLVSCVIEPCSRINVILGKNAQGKTNLLEAIYVVGHNRSFRGARDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123
              G    +    R++    L +  I  E R   S  + L++N+       +    L+  
Sbjct: 61  VTHGRREGY----RLKVTYALDERIIIFEQRYSESKNKVLRLNNKP--AASKTQHRLKSV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    +  G    RR FLD ++  + P + R +  +++++  RN  L +        
Sbjct: 115 VFTPEDLYLIKGEPERRRNFLDGILCQLRPEYERTLESYKKILGRRNAYLKQSRSFGQGM 174

Query: 184 SSIEAQMAELGVKINIARVEM-------INALSSLI--------MEYVQKENFPHIKLSL 228
             ++    E  V +  AR+ +       ++ L  L+        M YV   +FP     L
Sbjct: 175 RVLQGMFIEAAVPLICARLNLAAILEKEVSKLYQLLSGEAEDVCMRYVL--SFPLETGKL 232

Query: 229 TG-FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           T   L    D++    K++  K+             TL+GPHR D  + Y        + 
Sbjct: 233 TPDLLAASLDKALEVSKDKELKQGI-----------TLVGPHRDDFNL-YLRGHNARTYA 280

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+Q+ + V + L       N  G+ P+LLLDE+ A LD+++R  L   +     Q F+
Sbjct: 281 SQGQQRNLAVSLKLGELATYKNIKGYFPVLLLDEVLAELDKNRRTLLLEYLQQAEFQTFI 340

Query: 348 TGTDKS 353
           +  ++ 
Sbjct: 341 SSVERE 346


>gi|124026724|ref|YP_001015839.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. NATL1A]
 gi|123961792|gb|ABM76575.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. NATL1A]
          Length = 348

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 155/343 (45%), Gaps = 36/343 (10%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM-EGLADIS 89
           I +G NGVGK+N+LE+I  LS  R  R     D+       +    A +  M E    +S
Sbjct: 9   IVIGQNGVGKSNLLESIELLSSLRSHRSNRNQDLI-----YWDQDQACLSAMIEDDQKLS 63

Query: 90  IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI-FSGLSME--------R 140
           ++L  +  R  +  + + ++ R +D          L+  M  + FS L +E        R
Sbjct: 64  LELNRKGGR--KAYKNDKLLNRQID----------LIGPMRSVGFSALDLELIRGEPSLR 111

Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSIEAQMAELGV 195
           R +LDR+V  ++P +   +  F RL+R R++L      +SS        S + QMA +  
Sbjct: 112 RHWLDRIVQQLEPIYSDLIGRFSRLLRQRSQLWRNLSLESSKDQNILLDSFDMQMALVST 171

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFD 253
           +I+  R  +++ L  +   + Q  +    KL +T     K +  +S    +E   ++L +
Sbjct: 172 RIHRRRRRILDRLLPIASSWQQHLSNSQEKLDITYLPGSKLEGEESERVWRESIERQLLE 231

Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
            R  + ++    +GPHR D+     D       GS G+Q+ +++ + LA   LI    G 
Sbjct: 232 MRSEEEITGNCRVGPHRDDVQFSIND-VDARRFGSAGQQRTIVLSLKLAELELIKMVYGK 290

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           APILLLD++ A LD  KR  L         Q  ++ T    F+
Sbjct: 291 APILLLDDVLAELDP-KRQLLLLEAVGQKHQCLISATHLESFE 332


>gi|50841500|ref|YP_054727.1| recombination protein F [Propionibacterium acnes KPA171202]
 gi|81612508|sp|Q6ABL2|RECF_PROAC RecName: Full=DNA replication and repair protein recF
 gi|50839102|gb|AAT81769.1| DNA replication and repair protein RecF [Propionibacterium acnes
           KPA171202]
          Length = 394

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 166/367 (45%), Gaps = 28/367 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   + R
Sbjct: 3   VEHLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           +G+           G +    + +++E    R+ R       + R  D L   LR     
Sbjct: 63  LGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTVVFS 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEGYF 178
           P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL        + G  
Sbjct: 122 PNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSAGAE 181

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-----LD 233
             +     + ++A +G ++  AR++ ++A+  L      +E  P   L+   +     L+
Sbjct: 182 IGATMDIWDNELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTIDLE 240

Query: 234 GKF------DQSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKAIT 283
           G +      + S    ++E A +  D    R+ D + R  TL+GP R D+I+ +  +   
Sbjct: 241 GLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGEMPA 299

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
             + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V     
Sbjct: 300 KGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ-AD 357

Query: 344 QIFMTGT 350
           Q+ +T  
Sbjct: 358 QVLVTAA 364


>gi|307717720|ref|YP_003873252.1| DNA replication and repair protein RecF [Spirochaeta thermophila
           DSM 6192]
 gi|306531445|gb|ADN00979.1| DNA replication and repair protein RecF [Spirochaeta thermophila
           DSM 6192]
          Length = 363

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 157/354 (44%), Gaps = 39/354 (11%)

Query: 9   FLNISE--FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           FL I    FRN  +  +   A   +FVG+NG GKTNILE +  L  G  FR      + R
Sbjct: 2   FLTIGSEGFRNIVTGTIDVGAPVVVFVGENGQGKTNILELVYLLCYGVSFRTRQNTFLIR 61

Query: 67  IGSPSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            G  S      RV G     EG   + I +E     + + + +N+  I    EL     I
Sbjct: 62  RGRSS-----CRVHGEFRTEEGYI-LPILVEI--GPTSKEIFLNEKKIANRKEL---FSI 110

Query: 123 S-WLVPSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           S  +V + D I    G  +  R+F+++++  +DP     +  + R++  RN  L E   D
Sbjct: 111 SPCIVFAHDDIQFVVGSPLLHRQFMNQILTLVDPLFLDSLRTYNRILTSRNEALKEARED 170

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                  + Q+A++  +I + R  M++A SS++    ++           GF    FD S
Sbjct: 171 --LLDVYDDQLADIAHQITVKRERMMDAFSSILRSTCEE----------FGFSGNVFDVS 218

Query: 240 FCAL-----KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           + A      KEE  + L   R  D M   T  GPHR  L+       +   + STGE ++
Sbjct: 219 YRASLKGDGKEELMRILRSERTQDLMVGFTRRGPHRDRLVFTMNGHPVP-DYASTGEIRL 277

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           + + + +A    +  +TG  PILL D++   LD  KR  +  ++   G Q F T
Sbjct: 278 LSLLLRVAQTTYVRESTGKTPILLFDDVLLELDPLKRRRVVEMIPH-GRQSFFT 330


>gi|170780467|ref|YP_001708799.1| recombination protein F [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189039619|sp|B0RH73|RECF_CLAMS RecName: Full=DNA replication and repair protein recF
 gi|169155035|emb|CAQ00131.1| DNA replication protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 408

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 167/382 (43%), Gaps = 40/382 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++ +FRNY    +      T+FVG NG GKTN++EA+ FLS     R ++   + R
Sbjct: 3   VRHLSLGDFRNYTRADVALLPGATLFVGSNGQGKTNLVEALGFLSTLGSHRVSTDQALVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWL 125
            G+ S     A +  +   A   +++E + +RS     Q+N    +   EL ++      
Sbjct: 63  QGAES-----AVIRALLQHAGRELRVEVQINRSAANRAQVNGTATK-TRELPRYFSSVLF 116

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---FDSSW 182
            P    +  G    RRR LD+++    PR    + D++R ++ RN LL         +  
Sbjct: 117 APEDLALVRGDPSGRRRLLDQLLVLRTPRLAGVLSDYDRALKQRNTLLKSARARGMKADQ 176

Query: 183 CSSI---EAQMAELGVKINIARVEMINALSSLI----MEYVQKENFPHIKLSL------- 228
            S++   + ++  +G +I  AR  ++ +L   +    +     ++ P  +  L       
Sbjct: 177 LSTLDIWDERLVAIGSQIIAARGALVESLQPELARAYLAVAGSDHGPSARPELSILADDP 236

Query: 229 --------TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
                   TG  DG        +   +   +   R  +     TL+GPHR D++    + 
Sbjct: 237 GEDDVADETGARDGGRFTRTEDVVPVFTAAIARMRPRELERGLTLVGPHRDDVLF-RLNG 295

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLI--SNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
                + S GE     + I LA A L+   + TG  P+L+LD++ A LD+ +R  L   V
Sbjct: 296 LPAKGYASHGESWSFALAIKLASAELLRRDSQTG-DPVLILDDVFAELDQARRGRLAEAV 354

Query: 339 TDIGSQIFMTGTDKSVFDSLNE 360
           T    Q+ +T    +VF+ + E
Sbjct: 355 TGF-EQVLITA---AVFEDVPE 372


>gi|167765194|ref|ZP_02437307.1| hypothetical protein BACSTE_03580 [Bacteroides stercoris ATCC
           43183]
 gi|167696822|gb|EDS13401.1| hypothetical protein BACSTE_03580 [Bacteroides stercoris ATCC
           43183]
          Length = 378

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 156/355 (43%), Gaps = 16/355 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F  +   F G NG+GKTN+L+A+ FLS  +       +   R
Sbjct: 3   LKRISILNYKNLEQVELAFSPKLNTFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             S  FF      E  +G   +I   ++ R  +  +  +      R+ D +   L +  +
Sbjct: 63  HDS-DFFVIQGFYEAADGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVMV 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184
            P+   + SG S ERRRF+D ++   D  +   +I + + +  RN LL +E   +     
Sbjct: 119 SPADSVLISGGSDERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKSEMPVEEELFL 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             E  MA+ G  +   R E I     +   +    +    K+ LT +     D S  A+ 
Sbjct: 179 VWEEMMAQAGEVVFHKREEFIREFIPIFQSFYSFISQDKEKVGLT-YDSHARDASLLAVL 237

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +E        R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA  
Sbjct: 238 KE-------NRMRDQIMGFSLRGIHKDELNMLLGDFPIK-REGSQGQNKTYLVALKLAQF 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358
             +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +
Sbjct: 290 DFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRI 344


>gi|327404856|ref|YP_004345694.1| DNA replication and repair protein recF [Fluviicola taffensis DSM
           16823]
 gi|327320364|gb|AEA44856.1| DNA replication and repair protein recF [Fluviicola taffensis DSM
           16823]
          Length = 364

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 160/366 (43%), Gaps = 26/366 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRN++     F+A     VG NG GKTN+L+A+ +LS  R     SY + T 
Sbjct: 3   VESLSLVNFRNHSEAEFQFEAGVNCIVGKNGSGKTNVLDAVHYLSMCR-----SYLNPTD 57

Query: 67  IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             +  F   F  ++G  M+     ++    +        +      R+ D +  H  +  
Sbjct: 58  KQNIRFNEQFFVIQGCWMKDEQPFNLYCGVKAGSKKVFKKNKKEYNRLADHIG-HFPVVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P    + S  S  RRR++D ++   D  +   +  + +++  RN LL      G+F+ 
Sbjct: 117 ISPYDTDLISEGSEVRRRWMDGIISQFDHEYLSDLQRYNKVLDQRNALLKLQFENGFFER 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS- 239
                 + Q+ + G  I+  RV  I+A   L   Y +  +     +SL    + K  ++ 
Sbjct: 177 ESIEIWDEQLIKYGTAIHNKRVSFIDAFIPLFQHYYKWISQEQESVSLN--YESKLSETD 234

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVG 298
           F  L ++   K       D     T +G H+ D  + +  + + I   GS G+QK  L+ 
Sbjct: 235 FRTLIQQAYPK-------DMRVHYTSVGIHKDD--ITFLLEGLPIKRFGSQGQQKSFLIA 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDS 357
           + LA    +       PILLLD+I   LD  +   L  +V+ +   Q+ +T TD+    +
Sbjct: 286 LRLAQFDWLKERLNQTPILLLDDIFDKLDNLRVAQLMELVSKNTFGQVLVTDTDEIRVSA 345

Query: 358 LNETAK 363
           + ET +
Sbjct: 346 IFETIQ 351


>gi|315634817|ref|ZP_07890099.1| recombination protein F [Aggregatibacter segnis ATCC 33393]
 gi|315476369|gb|EFU67119.1| recombination protein F [Aggregatibacter segnis ATCC 33393]
          Length = 358

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 158/352 (44%), Gaps = 20/352 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN  ++ L  D      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLTVENFRNLQAVDLELDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDQPH-FTLFGQIQEQQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F              RL++ RN  L +    SS+  
Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVSFYTLWASLSRLLKQRNAALQQ---VSSYQQ 173

Query: 185 S--IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + ++ +L  ++++ R E   AL   I E   +   P + +S++      F Q +  
Sbjct: 174 MKIWDVELVKLAEQVSLLRAEYAQALQPEI-EQTCRLFLPELDISVS------FHQGWEK 226

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFL 301
            ++ YA+ L    + D     T+ GP ++D    +    + +    S G+ K+++  + L
Sbjct: 227 -EQNYAELLARNFERDRALGYTVSGPQKADF--RFKANGLPVEDILSRGQLKLLMCALRL 283

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           A    +        I L+D+ ++ LD+ KR+ L + + + GSQ+F+T   ++
Sbjct: 284 AQGEHLMQQKQRHCIFLIDDFASELDQTKRSLLAQRLQNSGSQVFVTAITQN 335


>gi|325283210|ref|YP_004255751.1| DNA replication and repair protein recF [Deinococcus proteolyticus
           MRP]
 gi|324315019|gb|ADY26134.1| DNA replication and repair protein recF [Deinococcus proteolyticus
           MRP]
          Length = 357

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 156/352 (44%), Gaps = 27/352 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+   +RN A   L F A  T   G+NG GKTN+LEA      GR        ++
Sbjct: 4   VRLSKLSTLNYRNLAPDTLEFPAGVTGVWGENGAGKTNLLEAAYLALTGR-TEAGRLEEL 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       + R + +EG   +S++ E    R  R L+++ V  R  D L +   +  
Sbjct: 63  VLAGQ---AEAYVRADVLEG-GSLSVQ-EVGIGRGRRQLKVDGVRTRTGD-LPRGSAV-L 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +  G   +RR +LD ++  +  R+  ++  +ER +  RN  L EG     W  
Sbjct: 116 IRPEDSELVFGSPSQRRAYLDSLLGRLSARYAEQLSRYERTVSQRNAALREG---QDWAL 172

Query: 185 SI-EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            + +A +  LG  I   R   +  L  L           + +L     LD +  +S    
Sbjct: 173 DVWDAPLVTLGRDIMEFRARALVRLEELA-------RHANAELGSRKALDIRLLESTDPA 225

Query: 244 KEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFL 301
              YA+ L   R+ + ++R  TL GPHR DL +      A T A  S GE +   + +  
Sbjct: 226 S--YAQTLH-ARRAEELARGVTLTGPHRDDLELTLGGLNAGTYA--SRGEGRTAALSLRY 280

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           A  +L+S   G  P+LL+D+ +A LD  +R  L  +   +  Q  +TGT++ 
Sbjct: 281 AELQLLSERFGEPPVLLIDDWTAELDPQRRQFLLDLAASV-PQAIVTGTEQP 331


>gi|75909597|ref|YP_323893.1| recombination protein F [Anabaena variabilis ATCC 29413]
 gi|97180310|sp|Q3M7N8|RECF_ANAVT RecName: Full=DNA replication and repair protein recF
 gi|75703322|gb|ABA22998.1| DNA replication and repair protein RecF [Anabaena variabilis ATCC
           29413]
          Length = 376

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 177/376 (47%), Gaps = 50/376 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  FRNY   ++ F A  TI VG+N  GK+N+LEA+  L+  R  R A   D+ +
Sbjct: 3   LKTLHLRHFRNYYDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMARDRDLVQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              P      A +E   G++D+S+ L  R+ R  R + +N       + L + +    ++
Sbjct: 63  EEEP-LAQINATLERDTGVSDLSLILR-RNGR--RTVALNG------ESLRRQMDFLGVL 112

Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            ++   FS L +E        RR +LD ++  ++P +   +  + +++R RN  L +   
Sbjct: 113 NAVQ--FSSLDLELVRGSPEVRRNWLDTLLIQLEPVYAHILQQYNQVLRQRNAYL-KKLQ 169

Query: 179 DSSWCSS------IEAQMAELGVKI-------NIARVEMINALSSLI---MEYVQKENFP 222
           DS+  +        +AQ+   G K+             +  A  + I    E +Q    P
Sbjct: 170 DSALTTQDSALAIWDAQLVTTGTKVIRRRDRALARLAPLATAWHTSISGSTEVLQISYTP 229

Query: 223 HIKLSLTGFLDGKFDQSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           +++L        +  Q+F + L++    +++ G         TL+GPHR ++ +   ++ 
Sbjct: 230 NVQLMQNQ--PEQVQQAFLSQLQQRAVPEMYRG--------TTLVGPHRDEVELT-INQT 278

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               +GS G+Q+ +++ + LA  +LI       P+LLLD++ A LD  ++N L   + D 
Sbjct: 279 PARQYGSQGQQRTLVLALKLAELQLIEEVVKEPPLLLLDDVLAELDPSRQNQLLDTIQD- 337

Query: 342 GSQIFMTGTDKSVFDS 357
             Q  +T T  S FD+
Sbjct: 338 RFQTLITTTHLSSFDA 353


>gi|330995529|ref|ZP_08319432.1| DNA replication and repair protein RecF [Paraprevotella xylaniphila
           YIT 11841]
 gi|329575309|gb|EGG56854.1| DNA replication and repair protein RecF [Paraprevotella xylaniphila
           YIT 11841]
          Length = 365

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 165/379 (43%), Gaps = 37/379 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++  ++N A   L F  +   F+G NG GKTN+L+A+ FLS  +    +  +   R
Sbjct: 3   LKKISVLNYKNIAQAELAFSPKMNCFIGHNGEGKTNLLDAVYFLSFCKSATHSVDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC------LQINDVVIRVVDELNKHL 120
            G   F         ++G      + E+ +   V C       +      +    L++H+
Sbjct: 63  HGEDFFM--------LQG----EYEHESGEPEEVYCGLKRKQKKRFKRNKKEYKRLSEHI 110

Query: 121 RISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEG 176
            +  +V   P+   + SG S ERRRF+D ++   D  +   ++ + R ++ RN LL  E 
Sbjct: 111 GLVPVVLVSPADADLISGGSEERRRFMDMVIVQYDHEYLDALVRYNRALQQRNVLLKQEE 170

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
             D +     E  MA+ G KI   R   +     +  ++  + +     + L     G+ 
Sbjct: 171 EPDEALIGLWEEMMAQEGEKIYEKRKAYVEEFVPVFQDFYARISRGKEHVGLRYISHGQR 230

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 ++ + AK        D +   +L G H+ DL +   +  I    GS G+ K  L
Sbjct: 231 GDLLEVIRRDRAK--------DRIMGYSLHGVHKDDLEMTLGEFPIK-REGSQGQNKTYL 281

Query: 297 VGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSV 354
           + + LA    +  T +   P+LLLD+I   LD D+   + ++V+ +   QIF+T T++  
Sbjct: 282 IALKLAQFDFLRRTGSRTTPLLLLDDIFDKLDADRVEQIVKLVSGEQFGQIFVTDTNRDH 341

Query: 355 FDSL----NETAKFMRISN 369
            D +    +E  K   + N
Sbjct: 342 LDRILEKTDEDYKLFYVEN 360


>gi|329297783|ref|ZP_08255119.1| recombination protein F [Plautia stali symbiont]
          Length = 361

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 150/361 (41%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEQADLTLAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R+EG E    + +      D  VR   I+      V EL + L +  + P  
Sbjct: 66  DAFV-LHGRIEGSERELAVGLSKNRAGDSKVR---IDGSDGHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR ++D   F   P       +  RL++ RN  L +     S     + +
Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHAYPGFFLAWSNLRRLLKQRNAALRQ-VARYSQIRPWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E   A++S I      +  P   LS + F  G   +S      ++ +
Sbjct: 181 LVPLAEQISAWRAEYSAAIASEITATC-SQFLPEFALSFS-FQRGWDKES------DFGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++D  +      +     S G+ K+++  + LA    ++ 
Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEYLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAKFMRIS 368
           ++G   + L+D+ ++ LD+ +R  L   +    +Q+F++    + V D  +E  K  R+ 
Sbjct: 292 SSGRRCLYLIDDFASELDDTRRRLLAECLKATQAQVFVSAIGVEHVIDMSDEKGKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|294665501|ref|ZP_06730784.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604704|gb|EFF48072.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 368

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 8/342 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      + + G+
Sbjct: 6   LSIHRLRRFQTVELHPSSALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                     EG     + + +   R        +++   +  +  L   L +    P  
Sbjct: 66  NDLEVFVEWKEGGGAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 125

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + SG    RRRFLD  +F ++P        + R ++ RN LL +G        + + +
Sbjct: 126 HVLISGGGEPRRRFLDWGLFHVEPDFLTLWRRYARALKQRNALLKQGA-QPRLLDAWDNE 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +AE G  +   R+  +  L   ++  V     P + LS   F  G + +   +L    A 
Sbjct: 185 LAESGENLTSRRMRYLERLQDRMVP-VADAIAPALGLSALTFAPG-WKRHEVSL----AD 238

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L   R+ D  +  T  GPHR+D +  +       A  S G+ K+  +   LA A   + 
Sbjct: 239 ALLLARERDRQNGYTSQGPHRADWMPSFLALPAKDAL-SRGQAKLTALACLLAQAEDFAF 297

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             G  P++ LD++ + LD   +  + + +    +Q+ +T T+
Sbjct: 298 ERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATE 339


>gi|289424466|ref|ZP_06426249.1| DNA replication and repair protein RecF [Propionibacterium acnes
           SK187]
 gi|289427445|ref|ZP_06429158.1| DNA replication and repair protein RecF [Propionibacterium acnes
           J165]
 gi|289155163|gb|EFD03845.1| DNA replication and repair protein RecF [Propionibacterium acnes
           SK187]
 gi|289159375|gb|EFD07566.1| DNA replication and repair protein RecF [Propionibacterium acnes
           J165]
 gi|332674402|gb|AEE71218.1| recombination protein F [Propionibacterium acnes 266]
          Length = 394

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 166/367 (45%), Gaps = 28/367 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   + R
Sbjct: 3   VERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           +G+           G +    + +++E    R+ R       + R  D L   LR     
Sbjct: 63  LGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTVVFS 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEGYF 178
           P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL        + G  
Sbjct: 122 PNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSAGAE 181

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-----LD 233
             +     + ++A +G ++  AR++ ++A+  L      +E  P   L+   +     L+
Sbjct: 182 IGATMDIWDNELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTIDLE 240

Query: 234 GKF------DQSFCALKEEYAKKLFD---GRKMDSMSRR-TLIGPHRSDLIVDYCDKAIT 283
           G +      + S    ++E A +  D    R+ D + R  TL+GP R D+I+ +  +   
Sbjct: 241 GLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGEMPA 299

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
             + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V     
Sbjct: 300 KGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ-AD 357

Query: 344 QIFMTGT 350
           Q+ +T  
Sbjct: 358 QVLVTAA 364


>gi|194472063|ref|ZP_03078047.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194458427|gb|EDX47266.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
          Length = 357

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 158/362 (43%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++G E    I +  + + D  VR   I+      + EL   + +  +    
Sbjct: 66  EAFV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITSEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDS--SWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN  L +   ++    W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQVSRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E  +A++  + +  Q +  P   L+ + F  G   ++      +
Sbjct: 178 DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 TV 350


>gi|118465169|ref|YP_879306.1| recombination protein F [Mycobacterium avium 104]
 gi|166220715|sp|A0Q8R8|RECF_MYCA1 RecName: Full=DNA replication and repair protein recF
 gi|118166456|gb|ABK67353.1| DNA replication and repair protein RecF [Mycobacterium avium 104]
          Length = 385

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 150/340 (44%), Gaps = 29/340 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A   L      T+F+G NG GKTN+LEA+ + S     R  + A + R
Sbjct: 3   VRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    +G E     ++ LE    R+ +  ++N   +R   E+   LR    
Sbjct: 63  AGADRTVVSTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   ERRR+LD +     P       D+++++R R  LL            
Sbjct: 118 APEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---L 232
           G  D+      ++++AE G ++  AR++++N L+  + E   +   P  + +  G+   L
Sbjct: 178 GALDT--LDVWDSRLAEYGAQLMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSL 234

Query: 233 DGKFDQSFCALKEEY----AKKLFDGRKMDSMSRRT-LIGPHRSDLIVDYCDKAITIAHG 287
                    A   +Y           R+   + R   L+GPHR DL + +  + +     
Sbjct: 235 GAAAAAEVNAGDRDYLEAALLAGLAARRYAELERGVCLVGPHRDDLEL-WLGEQVAKGFA 293

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 294 SHGESWSLALSLRLAAYELLRADES-DPVLLLDDVFAELD 332


>gi|114319169|ref|YP_740852.1| DNA replication and repair protein RecF [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114225563|gb|ABI55362.1| DNA replication and repair protein RecF [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 354

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 158/360 (43%), Gaps = 32/360 (8%)

Query: 16  RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFST 75
           RN     L   A   + VG N  GKT++LEAI F++  R FR    A +   G  + +  
Sbjct: 9   RNLQPFELTPGAGINVVVGANAAGKTSLLEAIYFVARTRSFRATRTAQMIGNGHEALW-V 67

Query: 76  FARVEGME-GLA----DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130
            A+ +G   G+A    +  ++L+ RD RS+              EL ++L +  +     
Sbjct: 68  RAQTQGHTIGVARDSQETQVRLDGRDGRSL-------------SELARYLPVQVINSEHQ 114

Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190
           R+       RR FL+  VF ++P+       + R +R RN  L  G    +W    +  +
Sbjct: 115 RLLLDGPAVRRSFLNWAVFHVEPQFSTVWGRYVRALRQRNAALKAGESRLAWA--YDEGL 172

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E    I+  R  +I+AL       V++   P   ++L      + D       E  A +
Sbjct: 173 IETADTIDRNRRHLIDALEPRWSALVRRW-LPDEPVALHYRPGWRSD-------EPLADR 224

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISN 309
           L   R++D     T  GPHR+DL   +    +   H  S G+QK++++ + LA A +   
Sbjct: 225 LEAQRELDRQRGFTNSGPHRADL--SFRVAGVEAQHRLSRGQQKLLVLALLLAQAAVTHT 282

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
            TG +  LL+D+++A LD  +R A+   +   G+Q F+T  +        + A++  +  
Sbjct: 283 LTGQSLTLLVDDLAAELDPARRAAVVEAIASSGNQAFLTAIEPGDIPLAPDAAQWFHVEQ 342


>gi|212694619|ref|ZP_03302747.1| hypothetical protein BACDOR_04149 [Bacteroides dorei DSM 17855]
 gi|212663120|gb|EEB23694.1| hypothetical protein BACDOR_04149 [Bacteroides dorei DSM 17855]
          Length = 371

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 158/366 (43%), Gaps = 37/366 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N     L F  +   F+G NG+GKTN+L+A+ +LS  +       +   R
Sbjct: 3   LKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                FF      E  +G   ++   L+ R  +  +  +      +    L+ H+    L
Sbjct: 63  -HEGDFFVIQGFYETNQGDPEEVYCGLKCRQKKQFKRNK------KEYSRLSDHIGFIPL 115

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
           V   P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   D  
Sbjct: 116 VMVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                E  MA  G  +   R E I        +  S I +  +K N  +   ++ G L  
Sbjct: 176 LMLVWEEMMAFAGEIVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAYESHAMNGNL-- 233

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                   +KE         RK D +   +L G H+ DL++   D  I    GS G+ K 
Sbjct: 234 -----LDIIKE--------SRKRDRIMGYSLRGIHKDDLVMQLGDFPIK-REGSQGQNKT 279

Query: 295 VLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK 352
            L+ + LA    +  T +   P+LLLD+I   LD  +   + ++V  D   QIF+T T++
Sbjct: 280 YLIALKLAQFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNR 339

Query: 353 SVFDSL 358
              D +
Sbjct: 340 DHLDKI 345


>gi|190572095|ref|YP_001969940.1| recombination protein F [Stenotrophomonas maltophilia K279a]
 gi|226737840|sp|B2FT82|RECF_STRMK RecName: Full=DNA replication and repair protein recF
 gi|190010017|emb|CAQ43622.1| putative DNA replication and repair protein RecF [Stenotrophomonas
           maltophilia K279a]
          Length = 364

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 153/362 (42%), Gaps = 15/362 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L + + R ++++ L       +  GDNG GKT++LEA+  ++ GR FR      + R
Sbjct: 3   IRRLALHQLRRFSAVDLSPQPGLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISI---KLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            G  +    F  VE  E  AD      K   R        +++   +  +  L   L + 
Sbjct: 63  QGQEAL-EIF--VEWDEQRADHPPHRRKAGLRHSGQDWKGRLDGEDVAQLGNLCAALAVV 119

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G   S   
Sbjct: 120 TFEPGSHALVSGGGEPRRRFLDWGLFHVEPDFLSLWRRYSRALKQRNALLKQG-GPSRML 178

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            + + ++AE G  +   R   +  L    +           +L + G    +    +   
Sbjct: 179 DTWDHELAEAGEPLTSRRQHYLERLQQRTVALAASLA---PQLGIQGL---ELSPGWRRH 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +   A  L   R+ D  +  T +GPHR+D  VD+       A  S G+ K+  +   LA 
Sbjct: 233 ELPLADALLLARERDRQAGYTSVGPHRADWSVDFHSIPGRDAL-SRGQAKLTALACLLAQ 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362
           A   +   G  P++ LD++++ LD   +  +   + +  +QIF+T T+  +    L   A
Sbjct: 292 AEDYAEQRGEWPVIALDDLASELDRTHQARVLERLLNGPAQIFITATETPAALLDLTHIA 351

Query: 363 KF 364
           +F
Sbjct: 352 RF 353


>gi|323465561|gb|ADX69248.1| DNA replication and repair protein recF [Lactobacillus helveticus
           H10]
          Length = 375

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 152/351 (43%), Gaps = 24/351 (6%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FRN   L + FD    IF+G N  GKTN+LEAI FL+  R  R  S  D   IG   
Sbjct: 8   VQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNS--DKELIG--- 62

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
           F   +  + G    + + + L     +  + + IN V    + +    L      P    
Sbjct: 63  FGGEYTNLLGHVRKSQVDLTLRVLITQKGKKVWINRVEQAKLSKYVGQLNAILFSPEDLE 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187
           +  G    RRRF+D+    I+  +      + +++  +N  L +       D  +   + 
Sbjct: 123 LIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQVFLDVLS 182

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-----KLSLTGFLDGKFDQSFCA 242
            Q+A +  ++   R + +  LS     +   + + HI     KL++         ++   
Sbjct: 183 DQLAGIAAEVIFRRFKFLRYLS-----HYASDAYAHISLGGEKLAIAYHPSVSTIEADDT 237

Query: 243 LKEEYAKKL--FDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           ++E Y K L  F+  K   M + T   GPHR D+      K   + + S G+Q+ + + +
Sbjct: 238 VEEIYQKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIALSV 296

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T T
Sbjct: 297 KLAEIQLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYIHG-KTQTFITTT 346


>gi|319785623|ref|YP_004145098.1| DNA replication and repair protein RecF [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464135|gb|ADV25867.1| DNA replication and repair protein RecF [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 376

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 163/379 (43%), Gaps = 26/379 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FR +    L       + +G NG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MRVTRLQLRDFRRFHETGLEPGPGVNLILGANGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIK---LETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            R  S +    F   E  + +    ++   L    D     L   DV    + EL   L 
Sbjct: 61  VRE-SAAALEVFVEWEQADAVGVPQLRRAGLRHAGDTWTGRLDGRDVA--QLGELCAALA 117

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAID----PRHRRRMIDFERLMRGRNRLLTEGY 177
           +    P    + SG +  RRRF+D  +F ++    P  RR    + R +R RN LL  G 
Sbjct: 118 VVTFDPGSHALISGAADNRRRFMDWGLFHVEQDFLPPWRR----YARALRQRNALLKAGG 173

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KF 236
            ++    + + ++AE G  +   R   +  L   +++          +LS +  L G +F
Sbjct: 174 SNAQ-LDAWDHELAESGEALTSHREAYLAELEPQVLDTA-------ARLSGSLHLQGLEF 225

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
              +   +   A  L  GR  D     T +GPHR+D  + Y       A  S G+ K+  
Sbjct: 226 QPGWRRHEVPLADALLLGRDRDRAMGYTGVGPHRADWKLGYVGLPGREAL-SRGQTKLAA 284

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTD-KSV 354
           + + LA AR  +   G  P++ LD++ + LD + +  + R + D  G Q+ +T T+    
Sbjct: 285 LAMLLAQARDFARRRGHWPVMALDDLPSELDREHQQRVLRFLADQPGVQLLVTATETPPA 344

Query: 355 FDSLNETAKFMRISNHQAL 373
            ++L     F+    H A+
Sbjct: 345 LEALEGLPMFVFHVEHGAI 363


>gi|238759586|ref|ZP_04620748.1| DNA replication and repair protein recF [Yersinia aldovae ATCC
           35236]
 gi|238702245|gb|EEP94800.1| DNA replication and repair protein recF [Yersinia aldovae ATCC
           35236]
          Length = 361

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 153/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     RV+  E  + + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  AEFV-LHGRVDVNERESSVGLSKSRQGDSKVR---IDGTDGHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +     + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRPWDLE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R     A+++ I         P   LS + F  G   +S      +Y +
Sbjct: 181 IIPLAERISEWRAAYSGAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T IGPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFERDRALTYTAIGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + LLD+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+ 
Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVTDMVGEKGKMFRVE 351

Query: 369 N 369
           +
Sbjct: 352 H 352


>gi|68249576|ref|YP_248688.1| recombination protein F [Haemophilus influenzae 86-028NP]
 gi|145632377|ref|ZP_01788112.1| recombination protein F [Haemophilus influenzae 3655]
 gi|145640665|ref|ZP_01796248.1| recombination protein F [Haemophilus influenzae R3021]
 gi|81335995|sp|Q4QLR9|RECF_HAEI8 RecName: Full=DNA replication and repair protein recF
 gi|68057775|gb|AAX88028.1| DNA replication and repair protein RecF [Haemophilus influenzae
           86-028NP]
 gi|144987284|gb|EDJ93814.1| recombination protein F [Haemophilus influenzae 3655]
 gi|145274591|gb|EDK14454.1| recombination protein F [Haemophilus influenzae 22.4-21]
 gi|301169717|emb|CBW29318.1| gap repair protein [Haemophilus influenzae 10810]
          Length = 359

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 162/367 (44%), Gaps = 17/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++      F Q +    
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +Y + L    + D     T  GP ++D    +  + + +    S G+ K+++  + LA 
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCVLRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
              +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  
Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 345

Query: 363 KFMRISN 369
           K   + N
Sbjct: 346 KMFSVHN 352


>gi|92112139|ref|YP_572067.1| recombination protein F [Chromohalobacter salexigens DSM 3043]
 gi|122421034|sp|Q1R1P0|RECF_CHRSD RecName: Full=DNA replication and repair protein recF
 gi|91795229|gb|ABE57368.1| DNA replication and repair protein RecF [Chromohalobacter
           salexigens DSM 3043]
          Length = 361

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 148/356 (41%), Gaps = 23/356 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ LN    RN A+L +       +  G NG GKT++LE +  L   R FR       
Sbjct: 1   MPLERLNFLGLRNLAALDMRPGPGINLITGANGSGKTSLLEGMHVLGMARSFRTQKLKHA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI---NDVVIRVVDELNKHLR 121
               + +  +   RV G     D  + L  R  R    L+I    +  +RV   L + L 
Sbjct: 61  IAHDADAV-TLHGRVAG-----DPPVALGVRRARDASELEIRLDGERGVRVA-RLAEALP 113

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           +  + P   R+  G    RR FLD  VF +            R ++ RN LL     D+ 
Sbjct: 114 LQLINPDAFRLLEGSPAARREFLDWGVFHVKHEFFEAWRRVRRALKHRNALLRHDRIDAR 173

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQS 239
                E ++A           E+++AL S  M    K  E+  H  L L+G L  ++ + 
Sbjct: 174 SMRVWEQELAHWS--------ELLDALRSEYMAQFAKAFEDTLHELLPLSG-LSLRYYRG 224

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           +   +    + L  GR  D     T  GP R+DL +    +A  +   S G+QK+V+  +
Sbjct: 225 WDK-QRGLLEVLEGGRDTDRQMGFTQQGPQRADLRLRIGKRA-AVEELSRGQQKLVVSAL 282

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            LA  RL+   TG   + L+D++ A LD   R      +  +  Q+F+T  ++   
Sbjct: 283 KLAQGRLLDELTGRTCVYLIDDLPAELDVTHRRIFCHWLERLRCQVFITSVEREAL 338


>gi|319901304|ref|YP_004161032.1| DNA replication and repair protein RecF [Bacteroides helcogenes P
           36-108]
 gi|319416335|gb|ADV43446.1| DNA replication and repair protein RecF [Bacteroides helcogenes P
           36-108]
          Length = 369

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 157/356 (44%), Gaps = 18/356 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F A+   F G NG+GKTN+L+AI FLS  +     +  D   
Sbjct: 3   LKRISILNYKNLEQVELSFSAKLNCFFGQNGMGKTNLLDAIYFLSFCKS--AGNPVDSQN 60

Query: 67  IGSPS-FFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           I   + FF      E  +G  + I   ++ R  +  +  +      R+ D +   L +  
Sbjct: 61  ICHDADFFVIQGGYESTDGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVM 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183
           + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +    
Sbjct: 118 VSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQLVEEELF 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E  MA+ G  +   R   I     +   +    +    ++ LT      +D    A 
Sbjct: 178 LIWEEMMAQAGEVVFRKREAFIQEFIPIFQSFYSFISQDKERVGLT------YDSH--AR 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
               ++ L + R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA 
Sbjct: 230 NASLSEVLKESRMRDQIMGYSLRGVHKDELNMLLGDFPIK-REGSQGQNKTYLVALKLAQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358
              +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +
Sbjct: 289 FDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDCI 344


>gi|15836608|ref|NP_297296.1| recombination protein F [Xylella fastidiosa 9a5c]
 gi|13959493|sp|Q9PHE1|RECF_XYLFA RecName: Full=DNA replication and repair protein recF
 gi|9104763|gb|AAF82816.1|AE003855_3 DNA replication and repair RecF protein [Xylella fastidiosa 9a5c]
          Length = 364

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 150/331 (45%), Gaps = 31/331 (9%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
           F+G+NG GKT++LEA+  +  GR FR      + R GS          E +E   D    
Sbjct: 28  FIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGLIRHGS----------ENLEIFVDWQET 77

Query: 92  --LETRDDRSVRCLQINDVVIRVVDELNKHLR--------ISWLVPSMDRIFSGLSMERR 141
             +  R  R+       + + R+  +   HL         I++   S   I S   + RR
Sbjct: 78  DLINARRRRAGLSHYGQEWIGRLDGQKIMHLATLCAALAVITFESSSYQLINSNAEL-RR 136

Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
           RFLD  +F ++P        +  +++ RN LL +   + +   + + +++E+G ++   R
Sbjct: 137 RFLDWGLFHVEPDFLDLWRCYTHVLKQRNSLLKQKE-ELAMLEAWDQKLSEVGEQLTFRR 195

Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            + +  L   ++  + +   P++K+    F  G        +       LF  R+ D   
Sbjct: 196 FQYLERLKQRVIPLISRIT-PNLKIHGLNFNHGWRRHELPLID-----ALFISRERDYQY 249

Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
             T +GPHRSD    +   +I   H  S G+ K++ +   LA A+   +  G  PIL LD
Sbjct: 250 GYTSLGPHRSDWTPQFA--SIPGVHVLSRGQGKLITLMCLLAQAQDFFDQRGEWPILALD 307

Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           ++++ LD+  +  +  ++ +I +Q+ +TGT+
Sbjct: 308 DLASELDQKHQWRVLEMLAEIPAQVLITGTE 338


>gi|157144342|ref|YP_001451661.1| recombination protein F [Citrobacter koseri ATCC BAA-895]
 gi|166220702|sp|A8ACL2|RECF_CITK8 RecName: Full=DNA replication and repair protein recF
 gi|157081547|gb|ABV11225.1| hypothetical protein CKO_00046 [Citrobacter koseri ATCC BAA-895]
          Length = 357

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 154/361 (42%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            SF     R++G E    I +  +   D  VR   I+      V EL   + +  + P  
Sbjct: 66  ESFV-LHGRLQGEERETAIGLTKDKLGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +        + +RL++ RN  L +           + +
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEVGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLRPWDKE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E    ++  + +  Q +  P   L+ + F  G   ++      +YA+
Sbjct: 181 LIPLAEQISTWRAEYSAGIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------DYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    ++ 
Sbjct: 233 VLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  ++ +K   + 
Sbjct: 292 ESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDKNSKMFTVE 351

Query: 369 N 369
            
Sbjct: 352 K 352


>gi|6969272|gb|AAF33693.1| putative recF [Mycobacterium avium subsp. paratuberculosis]
          Length = 385

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 149/340 (43%), Gaps = 29/340 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A   L      T+F+G NG GKTN+LEA+ + S     R  + A + R
Sbjct: 3   VRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    +G E     ++ LE    R+ +  ++N   +R   E+   LR    
Sbjct: 63  AGADRAVVSTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   ERRR+LD +     P       D+++++R R  LL            
Sbjct: 118 APEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRSDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---L 232
           G  D+      ++++AE G ++  AR++++N L+  + E   +   P  + +  G+   L
Sbjct: 178 GALDT--LDVWDSRLAEYGAQLMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSL 234

Query: 233 DGKFDQSFCALKEEYAKKLFDG-----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
                    A   +Y +          R  +      L+GPHR DL + +  + +     
Sbjct: 235 GAAASAEVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLEL-WLGEQVAKGFA 293

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 294 SHGESWSLALSLRLAAYELLRADES-DPVLLLDDVFAELD 332


>gi|126657418|ref|ZP_01728577.1| recombination protein F [Cyanothece sp. CCY0110]
 gi|126621405|gb|EAZ92117.1| recombination protein F [Cyanothece sp. CCY0110]
          Length = 380

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 187/385 (48%), Gaps = 39/385 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++  FRNY    L   +Q TI +G+N  GK+N+LEA+  L+  +  R     D+  
Sbjct: 3   LKNIHLYTFRNYEEQSLNLQSQKTILLGNNAQGKSNLLEAVELLATLKSHRTNRDRDLIL 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  +       VE   G +++ I L  +  RS   L +N       + L +HL     +
Sbjct: 63  EGERT-GQILGTVERKYGESELGITLRYQGRRS---LTLNH------ENLRRHLEFLGHI 112

Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---- 174
            +++  FS L ++        RR +LD ++  ++P +   +  + +++R RN LL     
Sbjct: 113 NAVE--FSCLDLDLVRGSPDTRRSWLDTLLIQLEPVYASIIHQYYKILRQRNALLKVIRK 170

Query: 175 ---EGYFDSSWCSSI------EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
              E    S+  + I      + Q+AE G ++   R  +I  ++ L  ++ Q+ +    +
Sbjct: 171 TIEEQENPSNLSAEISQLKVWDQQLAEAGTRVTRRRYRVIERITPLAQKWHQEISSGTER 230

Query: 226 LSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
           L +    + K + +    +++ +  K+   R  +     T++GPHR D+  +  ++    
Sbjct: 231 LEINYLPNIKIENEQPQQVQQAFLDKIEQRRMAEQQLATTVVGPHRDDVEFN-INQTPAK 289

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
           ++GS G+Q+ +++ I LA  +LI +  G  P+LLLD++ A LD +++N L  ++     Q
Sbjct: 290 SYGSQGQQRTLVLAIKLAELQLIEDVIGEPPLLLLDDVLAELDPNRQNKLLEVIQG-RFQ 348

Query: 345 IFMTGTDKSVFDS--LNETAKFMRI 367
             +T T    FD+  LN +++ M++
Sbjct: 349 TLITTTYLHSFDAQWLN-SSQIMKV 372


>gi|293393723|ref|ZP_06638031.1| recombination protein F [Serratia odorifera DSM 4582]
 gi|291423767|gb|EFE96988.1| recombination protein F [Serratia odorifera DSM 4582]
          Length = 362

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 155/362 (42%), Gaps = 16/362 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         VG NG GKT++LEA+  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLAPAPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHDQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           P +     RV+ G E    + +    + D  VR   I+      V EL + L +  + P 
Sbjct: 66  PEYV-LHGRVDSGSERELSVGLSKSRQGDSKVR---IDGSDGHKVAELAQLLPMQLITPE 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
              + +G    RR FLD   F  +P       + +RL++ RN  L +     +   + + 
Sbjct: 122 GFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIRAWDQ 180

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++  L  +I+  R    +A+++ I      +  P   LS + F  G   +S      +Y 
Sbjct: 181 ELIPLAERISDWRAAYSDAIAADITATC-AQFLPEFALSFS-FQRGWDKES------DYG 232

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           + L    + D     T +GPH++D  +   D        S G+ K+++  + LA    ++
Sbjct: 233 ELLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLT 291

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367
             +G   + L+D+ ++ LD  +R  L   +    +Q+F++  + + V D + E  K  R+
Sbjct: 292 RQSGRRCLYLIDDFASELDTGRRRLLADRLKATQAQVFVSAVSAEQVTDMVGEKGKMFRV 351

Query: 368 SN 369
             
Sbjct: 352 EQ 353


>gi|332882412|ref|ZP_08450040.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332679796|gb|EGJ52765.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 365

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 166/379 (43%), Gaps = 37/379 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++  ++N A   L F  +   F+G NG GKTN+L+A+ FLS  +    +  +   R
Sbjct: 3   LKKISVLNYKNIAQAELAFSPKMNCFIGHNGEGKTNLLDAVYFLSFCKSATNSVDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC------LQINDVVIRVVDELNKHL 120
            G   F         ++G      + E+ +   V C       +      +    L++H+
Sbjct: 63  HGEDFFM--------LQG----EYEHESGEPEEVYCGLKRKQKKRFKRNKKEYKRLSEHI 110

Query: 121 RISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEG 176
            +  +V   P+   + SG S ERRRF+D ++   D  +   ++ + + ++ RN LL  E 
Sbjct: 111 GLVPVVLVSPADADLISGGSEERRRFMDMVIVQYDHEYLDALVRYNKALQQRNVLLKQEE 170

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
             D +     E  MA+ G KI   R   +     +  ++  + +     + L     G+ 
Sbjct: 171 EPDEALMGLWEEMMAQEGEKIYEKRKAYVEEFIPVFQDFYARISRGKEHVGLRYISHGQR 230

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
            +    ++ + AK        D +   +L G H+ DL +   +  I    GS G+ K  L
Sbjct: 231 GELLDVIRRDRAK--------DRIMGYSLHGVHKDDLEMTLGEFPIK-REGSQGQNKTYL 281

Query: 297 VGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSV 354
           + + LA    +  T +   P+LLLD+I   LD D+   + ++V+ +   QIF+T T++  
Sbjct: 282 IALKLAQFDFLRRTGSRTTPLLLLDDIFDKLDADRVEQIVKLVSGEQFGQIFVTDTNREH 341

Query: 355 FDSL----NETAKFMRISN 369
            D +    +E  K   + N
Sbjct: 342 LDRILEKTDEDYKLFYVEN 360


>gi|260774983|ref|ZP_05883883.1| DNA recombination and repair protein RecF [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260609073|gb|EEX35232.1| DNA recombination and repair protein RecF [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 360

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 157/365 (43%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEA+  L  GR F+ +    V +   
Sbjct: 6   LIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRVIQNDC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  DELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +     RR F+D  VF  +         F+RL + RN LL     Y + S+   
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRELSYW-- 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + +MA L   I+  R   +  ++    E  Q    P  ++ L  +     D  + A+ E
Sbjct: 179 -DQEMARLAENISQWRATYVEQMTEKATEICQT-FLPEFEIQLKYYRGWDKDTPYQAILE 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
              ++       D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 237 NNFER-------DQALGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   + L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L+E  + 
Sbjct: 289 HLTEMTGKQCVYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDENGRM 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|319897497|ref|YP_004135694.1| DNA replication and repair protein recf [Haemophilus influenzae
           F3031]
 gi|317433003|emb|CBY81374.1| DNA replication and repair protein RecF [Haemophilus influenzae
           F3031]
          Length = 359

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 161/367 (43%), Gaps = 17/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPGFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ +L  +++  R E   AL   I +  Q    P ++++++      F Q +    
Sbjct: 176 IWDVELTKLAHQVSQWRTEYAEALRPEIEQTCQL-FLPELEINVS------FHQGWEK-N 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +Y + L    + D     T  GP ++D    +  + + +    S G+ K+++  + LA 
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCALRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
              +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  
Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 345

Query: 363 KFMRISN 369
           K   + N
Sbjct: 346 KMFSVHN 352


>gi|237711116|ref|ZP_04541597.1| DNA replication and repair protein RecF [Bacteroides sp. 9_1_42FAA]
 gi|229454960|gb|EEO60681.1| DNA replication and repair protein RecF [Bacteroides sp. 9_1_42FAA]
          Length = 371

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 158/366 (43%), Gaps = 37/366 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N     L F  +   F+G NG+GKTN+L+A+ +LS  +       +   R
Sbjct: 3   LKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                FF      E  +G   ++   L+ R  +  +  +      +    L+ H+    L
Sbjct: 63  -HEGDFFVIQGFYETNQGDPEEVYCGLKRRQKKQFKRNK------KEYSRLSDHIGFIPL 115

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
           V   P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   D  
Sbjct: 116 VMVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                E  MA  G  +   R E I        +  S I +  +K N  +   ++ G L  
Sbjct: 176 LMLVWEEMMAFAGEVVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAYESHAMNGNL-- 233

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                   +KE         RK D +   +L G H+ DL++   D  I    GS G+ K 
Sbjct: 234 -----LDIIKE--------SRKRDRIMGYSLRGIHKDDLVMQLGDFPIK-REGSQGQNKT 279

Query: 295 VLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK 352
            L+ + LA    +  T +   P+LLLD+I   LD  +   + ++V  D   QIF+T T++
Sbjct: 280 YLIALKLAQFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNR 339

Query: 353 SVFDSL 358
              D +
Sbjct: 340 DHLDKI 345


>gi|291615641|ref|YP_003518383.1| RecF [Pantoea ananatis LMG 20103]
 gi|291150671|gb|ADD75255.1| RecF [Pantoea ananatis LMG 20103]
 gi|327395907|dbj|BAK13329.1| DNA replication and repair protein RecF [Pantoea ananatis AJ13355]
          Length = 361

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 151/361 (41%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEQADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R+EG E    + +      +  VR   I+      V EL + L +  + P  
Sbjct: 66  AAFV-LHGRLEGQEREFSVGLSKNRAGESKVR---IDGSDGHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR ++D   F   P       +  RL++ RN  L +     S     + +
Sbjct: 122 FTLLNGGPKYRRAYVDWGCFHNTPGFFNAWSNLRRLLKQRNAALRQ-VTRYSQIRPWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R +   A+S+ I+     +  P   L  + F  G   +S      +YA+
Sbjct: 181 LVPLAEQISQWRADYSAAISAEIVTTC-AQFLPEFDLRFS-FQRGWDKES------DYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++D  +      +     S G+ K+++  + LA    ++ 
Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
            +G   + L+D+ ++ LD+ +R  L   +    +Q+F++  + + V D  +E  K  R+ 
Sbjct: 292 QSGRRCVYLIDDFASELDDSRRRLLAERLKATQAQVFVSAISSEHVIDMTDEKGKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|41406101|ref|NP_958937.1| recombination protein F [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|45645207|sp|Q9L7L5|RECF_MYCPA RecName: Full=DNA replication and repair protein recF
 gi|41394449|gb|AAS02320.1| RecF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 385

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 149/340 (43%), Gaps = 29/340 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A   L      T+F+G NG GKTN+LEA+ + S     R  + A + R
Sbjct: 3   VRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    +G E     ++ LE    R+ +  ++N   +R   E+   LR    
Sbjct: 63  AGADRAVVSTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   ERRR+LD +     P       D+++++R R  LL            
Sbjct: 118 APEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---L 232
           G  D+      ++++AE G ++  AR++++N L+  + E   +   P  + +  G+   L
Sbjct: 178 GALDT--LDVWDSRLAEYGAQLMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSL 234

Query: 233 DGKFDQSFCALKEEYAKKLFDG-----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
                    A   +Y +          R  +      L+GPHR DL + +  + +     
Sbjct: 235 GAAASAEVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLEL-WLGEQVAKGFA 293

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 294 SHGESWSLALSLRLAAFELLRADES-DPVLLLDDVFAELD 332


>gi|254282777|ref|ZP_04957745.1| DNA replication and repair protein RecF [gamma proteobacterium
           NOR51-B]
 gi|219678980|gb|EED35329.1| DNA replication and repair protein RecF [gamma proteobacterium
           NOR51-B]
          Length = 357

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 156/355 (43%), Gaps = 33/355 (9%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           IK L I   RN  AS+ L   A   +  G NG GKT++LEAI  L+ GR FR  S   V 
Sbjct: 2   IKQLAIEGVRNLDASVSLGSSA--NLLYGRNGSGKTSVLEAIHLLAVGRSFRANSAKPVI 59

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                    T    EG     +  + ++   D SV   +IN   +  +  L + L +  +
Sbjct: 60  GFDRDHCLVTATVTEGNR---NQQLGIQRSKDGSV-IARINGEAVTSLAMLAEVLPVVVM 115

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAID----PRHRRRMIDFERLMRGRNRLLTEGYF--D 179
              +  +  G    RRRF+D  VF ++    P  RR    F+R +R RN  L  G    D
Sbjct: 116 DSGIVSLIDGQPEGRRRFIDASVFHVEQSFLPAWRR----FQRALRQRNAGLRRGTLEGD 171

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +W      ++A  G K+   R   ++AL +  +   +  +     ++L  F  G +D++
Sbjct: 172 EAW----RREVASAGQKLTEMRSVALDALQARFVASAEALSDDIAGMALV-FRAG-WDKT 225

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLV 297
              L E   + L    + D +   T +GPHR+D  L++D    A  +   S G+ K+   
Sbjct: 226 -VGLLEALERSL----ESDRLQGFTHVGPHRADIKLLIDGRPAAEVM---SRGQLKLAAT 277

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            + LA   LI+  +   P+ L+D++ A LD     A+   +   G Q+  T  D+
Sbjct: 278 ALKLAQGGLIAQQSRSTPVYLVDDLLAELDSGHSRAVCDQLVAAGGQVVFTAVDR 332


>gi|255320700|ref|ZP_05361877.1| DNA replication, recombination and repair protein [Acinetobacter
           radioresistens SK82]
 gi|262380669|ref|ZP_06073822.1| recombinational DNA repair ATPase [Acinetobacter radioresistens
           SH164]
 gi|255302316|gb|EET81556.1| DNA replication, recombination and repair protein [Acinetobacter
           radioresistens SK82]
 gi|262297617|gb|EEY85533.1| recombinational DNA repair ATPase [Acinetobacter radioresistens
           SH164]
          Length = 360

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 166/363 (45%), Gaps = 34/363 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  LNI   RN +++ L       +F G NG GKT+ILEAI  L+ GR FR        +
Sbjct: 3   ITRLNIERVRNLSAVALSELQPFNVFYGANGSGKTSILEAIHLLATGRSFRTYIPKHYIQ 62

Query: 67  IGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            G+     F  +     GM+ +               + +++N   +    +L K L + 
Sbjct: 63  SGASDTIVFAQSATEKIGMQKMLS-----------GEQIIKVNGDTVATQGQLAKMLALQ 111

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           ++ P    I    +  RR+ LD ++F ++P   +    + R ++ RN LL          
Sbjct: 112 YIDPLSTDIIDHGAKPRRQLLDWLMFHVEPEFYQTWQYYSRALKQRNSLLKS-------R 164

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFPHIKLSLTGFLDGKFDQSF 240
            ++     +   K+  +  E+++A  S +ME  +   K++   +   L   LD  +   F
Sbjct: 165 QTLSVDELDPWNKMLASYGELLHAQRSQVMEQWKIYFKQDLSQLLPDLEIELD--YVSGF 222

Query: 241 CALKEEYAK-KLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVG 298
            + +  Y    L+  + +D   R T  GPHR+DL +      A  I   S G++K++++ 
Sbjct: 223 HSEQGLYQDLTLYHQKDLD--RRYTEYGPHRADLRLKTPLGDADNIL--SRGQKKLLIMA 278

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357
           + L+   ++ + +    ++LLD+++A LD   +  L   ++ +GSQ+F+T  + KSV   
Sbjct: 279 LKLSQIAML-HASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFITTLEHKSVQQH 337

Query: 358 LNE 360
           L++
Sbjct: 338 LHD 340


>gi|284928773|ref|YP_003421295.1| DNA replication and repair protein RecF [cyanobacterium UCYN-A]
 gi|284809232|gb|ADB94937.1| DNA replication and repair protein RecF [cyanobacterium UCYN-A]
          Length = 380

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 183/382 (47%), Gaps = 54/382 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++  FRNY    +   +Q TI +G+N  GK+N+LEAI  L+  +  R     D+  
Sbjct: 3   LKNIHLYTFRNYYKQSVNLQSQKTILLGNNAQGKSNLLEAIELLATLKSHRTRRDQDLIL 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  S   T A VE + G +++SI L +   RS   L +N       ++L++HL     +
Sbjct: 63  EGEKSSQIT-ANVERIYGQSELSITLRSSGKRS---LMLNH------EKLHRHLEFLGHI 112

Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---E 175
            +++  FS L ++        RR +LD ++  ++P +   +  + +++R RN LL    +
Sbjct: 113 NAVE--FSCLDLDLVRGSPEIRRIWLDTLLIQLEPIYAHIINQYHKILRQRNSLLKIIRK 170

Query: 176 GYFDS----------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
            + DS          S     + Q+AE G ++   R  +I  L  L  ++ +        
Sbjct: 171 QFNDSKKSDNFMTTISQLKLWDEQLAEAGTRVTRRRNRVIQRLVPLAQKWHK-------- 222

Query: 226 LSLTG---FLDGKF-------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
            S++G    LD  +       +++   +++ + +K+     ++     T++GPHR D+  
Sbjct: 223 -SISGKAELLDINYLSNITIENENHQTIQQRFLEKIEQRSIIERNLATTVVGPHRDDVEF 281

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
           +  +K     +GS G+Q+ +++ I LA  +LI +  G  P+LLLD++ A LD +++  L 
Sbjct: 282 N-INKNQAKFYGSQGQQRTLVLAIKLAELQLIEDVIGEPPLLLLDDVLAELDHNRQKQLL 340

Query: 336 RIVTDIGSQIFMTGTDKSVFDS 357
             +     Q  +T T    FD+
Sbjct: 341 EAIQG-KFQTLITTTHLPTFDT 361


>gi|148358142|ref|YP_001249349.1| DNA recombination/repair protein ATPase RecF [Legionella
           pneumophila str. Corby]
 gi|148279915|gb|ABQ54003.1| DNA recombination and repair protein ATPase RecF [Legionella
           pneumophila str. Corby]
          Length = 353

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 151/349 (43%), Gaps = 41/349 (11%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I  FRN AS  L+ +       G NG GKT++LEA+  LS    FR    A +   G   
Sbjct: 8   IHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVAPIISYGQNQ 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             + FA        + IS++    D   ++   +N+       +L   L    +   + +
Sbjct: 68  -LNVFAHTYDE---STISVQKSITDGTQIK---LNNQFCCTTSQLAYALPCQVIYSDIFQ 120

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIE 187
           I       RR  LD  +F +   + +   D++R++  RN LL    T  +F   W    +
Sbjct: 121 IIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHF-IPW----D 175

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------FLDGKFDQSFC 241
            Q+++L  +++ AR       +   +++  K  F  +   LT       +  G   ++  
Sbjct: 176 QQLSQLANQLDKAR-------NDYFLQWQPK--FYQVLSDLTNISCTIEYYKGWDRKNAG 226

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIF 300
              EE  +K FD    D     T  GPH++DLI++   +   + H  S G+QK++L+ + 
Sbjct: 227 QNMEELLQKSFDS---DKNKLYTQYGPHQADLIINI--EQYRVKHTLSRGQQKIILIALK 281

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           LA  +L+        + L+D+++A LD+  +  L + +T    Q  +T 
Sbjct: 282 LAQGQLLDKDC----LYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITN 326


>gi|309973509|gb|ADO96710.1| DNA replication and repair protein RecF [Haemophilus influenzae
           R2846]
          Length = 359

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 162/367 (44%), Gaps = 17/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++      F Q +    
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +Y + L    + D     T  GP ++D    +  + + +    S G+ K+++  + LA 
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF--RFKAQGLPVEDVLSRGQLKLLMCVLRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
              +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  
Sbjct: 286 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEIQVENK 345

Query: 363 KFMRISN 369
           K   + N
Sbjct: 346 KMFSVHN 352


>gi|294627436|ref|ZP_06706020.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598257|gb|EFF42410.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 368

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 8/342 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      + + G+
Sbjct: 6   LSIHRLRRFQTVELHPSSALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                     EG     + + +   R        +++   +  +  L   L +    P  
Sbjct: 66  NDLEVFVEWKEGGGAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 125

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + SG    RRRFLD  +F ++P        + R ++ RN LL +G        + + +
Sbjct: 126 HVLISGGGEPRRRFLDWGLFHVEPDFLTLWRRYARALKQRNALLKQGA-QPRLLDAWDNE 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +AE G  +   R+  +  L   ++  V     P + LS   F  G + +   +L    A 
Sbjct: 185 LAESGENLTSRRMRYLERLQDRMVP-VADAIAPALGLSALTFAPG-WKRHEVSL----AD 238

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L   R+ D  +  T  GPHR+D +  +       A  S G+ K+  +   LA A   + 
Sbjct: 239 ALLLARERDRQNGYTSQGPHRADWMPSFLALPGKDAL-SRGQAKLTALACLLAQAEDFAF 297

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             G  P++ LD++ + LD   +  + + +    +Q+ +T T+
Sbjct: 298 ERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATE 339


>gi|265750702|ref|ZP_06086765.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_33FAA]
 gi|263237598|gb|EEZ23048.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_33FAA]
          Length = 371

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 158/366 (43%), Gaps = 37/366 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N     L F  +   F+G NG+GKTN+L+A+ +LS  +       +   R
Sbjct: 3   LKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                FF      E  +G   ++   L+ R  +  +  +      +    L+ H+    L
Sbjct: 63  -HEGDFFVIQGFYETNQGDPEEVYCGLKRRQKKQFKRNK------KEYSRLSDHIGFIPL 115

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
           V   P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   D  
Sbjct: 116 VMVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                E  MA  G  +   R E I        +  S I +  +K N  +   ++ G L  
Sbjct: 176 LMLVWEEMMAFAGEIVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAYESHAMNGNL-- 233

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                   +KE         RK D +   +L G H+ DL++   D  I    GS G+ K 
Sbjct: 234 -----LDIIKE--------SRKRDRIMGYSLRGIHKDDLVMQLGDFPIK-REGSQGQNKT 279

Query: 295 VLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK 352
            L+ + LA    +  T +   P+LLLD+I   LD  +   + ++V  D   QIF+T T++
Sbjct: 280 YLIALKLAQFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNR 339

Query: 353 SVFDSL 358
              D +
Sbjct: 340 DHLDKI 345


>gi|331693902|ref|YP_004330141.1| DNA replication and repair protein recF [Pseudonocardia
           dioxanivorans CB1190]
 gi|326948591|gb|AEA22288.1| DNA replication and repair protein recF [Pseudonocardia
           dioxanivorans CB1190]
          Length = 380

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 150/330 (45%), Gaps = 16/330 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR++    L  D   T+ VG NG GKTN++EA+ +++     R A+ A +
Sbjct: 1   MHLRRLAVTDFRSWEQADLDLDPGVTVLVGSNGEGKTNLVEAVGYIATLGSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R G     ++ A V G  +    +++++LE    ++ R       V R  D L   LR 
Sbjct: 61  IRRG-----ASRAVVRGVVVNQRRELAVELEITAGKANRARVNRSPVPRTRDVLGI-LRT 114

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDS 180
               P    +  G   ERRRFLD ++ A  PR+     D+ER++R R+ LL       D 
Sbjct: 115 VLFAPEDLALVRGDPGERRRFLDDLLVARYPRYAGVRADYERVLRQRSALLKTARAGGDL 174

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDGKFD 237
                 +  +A  G ++   R++++  L+         V   + P   L     L+G+  
Sbjct: 175 RTLDVWDGHLARHGSELLAGRLDLVAGLAPPATAAFADVAPSSDP-AALQYRSSLEGELP 233

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
               AL+E   + L   R+ +      L+GPHR DL +   D      + S GE   + +
Sbjct: 234 ADAAALEELLLEALGRVRRQEVDRGVCLVGPHRDDLEIRLGDGPAK-GYASHGESWALAL 292

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLD 327
            + L   RL+       P+L+LD++ A LD
Sbjct: 293 ALRLGSYRLL-QADDVEPVLILDDVFAELD 321


>gi|119491644|ref|ZP_01623516.1| recombination protein F [Lyngbya sp. PCC 8106]
 gi|119453373|gb|EAW34537.1| recombination protein F [Lyngbya sp. PCC 8106]
          Length = 390

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 176/382 (46%), Gaps = 45/382 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++ +FRNY   ++ FDA  TI VGDN  GK+N+LEA+  LS  +  R +   ++  
Sbjct: 3   LKTLHLKQFRNYRDQKVAFDAPKTILVGDNAQGKSNLLEAVELLSTLKSHRVSRDRELI- 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           + +         +E   G  ++ + L ++  R+V  L     + R +D L+    + +  
Sbjct: 62  LDTQDNGQITGNLERETGHIELGLILRSKGRRTV--LLNRQSLRRQLDFLSILNVVQF-- 117

Query: 127 PSMDRIFSGLSMERRR-FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----- 180
            S+D      S ERRR ++DR++  I+P +   +  + +++R RN LL +    S     
Sbjct: 118 SSLDLELVRGSPERRRSWIDRLLVQIEPVYAYILQQYYQVLRQRNALLKKARSQSHSPGE 177

Query: 181 ---------SWCSSIEAQMAELGVKINIARVEMINALSSLIM----------EYVQKENF 221
                    S  +  +AQ+A  G ++   R  ++  L  L            E +Q    
Sbjct: 178 EQPQKQILNSELAVWDAQLAVSGARVIRRRDRVLERLIPLAQTWHHLISGSTENLQLTYQ 237

Query: 222 PHIKL------SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
           P++++       L+        Q+F        +K+      +     TL+GPHR D+I 
Sbjct: 238 PNVQVIAAENTRLSALSPQDVQQAFL-------QKISTRTLAEHQQGTTLVGPHRDDIIF 290

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
              ++     +GS+G+Q+ +++ + LA  +LI    G  P+LLLD++ A LD  ++N L 
Sbjct: 291 T-INQTPARQYGSSGQQRTLVLALKLAELQLIEAVIGEPPLLLLDDVLAELDLSRQNQLL 349

Query: 336 RIVTDIGSQIFMTGTDKSVFDS 357
             + D   Q  +T T    FDS
Sbjct: 350 EAIGD-RFQTLITTTHLGAFDS 370


>gi|20806546|ref|NP_621717.1| recombinational DNA repair ATPase [Thermoanaerobacter tengcongensis
           MB4]
 gi|254478930|ref|ZP_05092292.1| RecF/RecN/SMC N terminal domain, putative [Carboxydibrachium
           pacificum DSM 12653]
 gi|51316490|sp|Q8RDL3|RECF_THETN RecName: Full=DNA replication and repair protein recF
 gi|20514983|gb|AAM23321.1| Recombinational DNA repair ATPase [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035152|gb|EEB75864.1| RecF/RecN/SMC N terminal domain, putative [Carboxydibrachium
           pacificum DSM 12653]
          Length = 364

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 161/353 (45%), Gaps = 25/353 (7%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FRN    +L F     +  G N  GK+N+LEAI  LS GR FR +  +++ +     
Sbjct: 8   VDNFRNLKKQKLEFCEGVNLIYGLNAQGKSNLLEAIRLLSMGRSFRGSKMSELVKFDEEY 67

Query: 72  FFSTFARVEGMEGLADI-SIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           F+     V G+   AD    K+E        + +++N   ++   E+  H       P  
Sbjct: 68  FY-----VRGLVRSADFYEKKIEFGYKVNGNKVIKVNGNKLKSTGEILGHFLTVIFSPED 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE-- 187
             I       RR++LD  +  ID  +   ++ + + +  RN LL +   +      +E  
Sbjct: 123 IEIIKEGPSRRRKYLDACISVIDKNYFFDLLQYNKTLSNRNSLLKKIKEEGKGEDLLEIF 182

Query: 188 -AQMAELGVKI----NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             ++AE G +I    N    ++ N++S  +ME +  E    I L+  G  +   +     
Sbjct: 183 DEKLAEYGARIIKVRNNYLEKLKNSMSKFLME-ISNEKLEIIYLNSAGVKEVHEEN---L 238

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVLVGIF 300
           ++E+   +L     +D     T +GPHR D  ++++  D  +   + S G+++   + + 
Sbjct: 239 IREKLKNRLTKSLTLDLKYLSTQVGPHREDFKILINGYDSRV---YSSQGQKRTAALCLK 295

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           L+   ++   TG  P+LLLD++ + LD++++  + + +   G Q F+T T KS
Sbjct: 296 LSELEILEEETGEKPVLLLDDVMSELDDNRKKYILKKLE--GFQSFITHTSKS 346


>gi|288573677|ref|ZP_06392034.1| DNA replication and repair protein RecF [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569418|gb|EFC90975.1| DNA replication and repair protein RecF [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 354

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 153/345 (44%), Gaps = 42/345 (12%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYADVTRIGSPS 71
           FRN  + R+ +D +  + +G NG GKTNILE++  L+   P +  R++   +     S  
Sbjct: 11  FRNLETGRIKWDRKLNLLIGPNGAGKTNILESLHILTGWGPFKSLRKSPLVNWNSDESRG 70

Query: 72  FF-STFARVEGMEGLADISIKLETRDDRSVRC--LQINDVVIRVVDELNKHLRISWL--V 126
           F   TF      EG  ++ I+       +++C   + N   IR         R+  L  +
Sbjct: 71  FLEGTF------EGEDNVLIQSSVTSRCAMKCDGKRSNCASIR--------FRVPALAFL 116

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    +  G    RRRFLD +   + P +  ++ ++ R +R +  LL+EG   +    S+
Sbjct: 117 PGDLALIEGGPSVRRRFLDVLCALLYPVYALKLTEYRRAVRHKRALLSEGR-STELIDSV 175

Query: 187 EAQMAEL----GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-LDGKFDQSFC 241
            A MAE       K ++A    + + S L+   ++      + LS  G  L G       
Sbjct: 176 MAPMAEWIWTCREKASLAVTMGLESFSDLLPGPIE------LALSRGGIGLAGNNPIG-- 227

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
                Y + +   R+ +  S R L+GPHR DL +D      + +  S G+++   + + +
Sbjct: 228 -----YIEGVRSRRRAEIGSGRPLVGPHRDDLTIDASGMEAS-SRFSRGQRRRTSLAMVM 281

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           A    +      +PILLLDE+++ LD+  R      +   G QIF
Sbjct: 282 AAGWAVERKLRRSPILLLDEVASELDQSGREITVETLVSSGWQIF 326


>gi|161506638|ref|YP_001576586.1| recombination protein F [Lactobacillus helveticus DPC 4571]
 gi|172048333|sp|A8YW44|RECF_LACH4 RecName: Full=DNA replication and repair protein recF
 gi|160347627|gb|ABX26301.1| DNA repair and genetic recombination protein [Lactobacillus
           helveticus DPC 4571]
          Length = 375

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 149/347 (42%), Gaps = 14/347 (4%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FRN   L + FD    IF+G N  GKTN+LEAI FL+  R  R  S  D   IG   
Sbjct: 8   VQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNS--DKELIG--- 62

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
           F   +  + G    + + + L     +  + + IN V    + +    L      P    
Sbjct: 63  FGGEYTNLLGHVRKSQVDLTLRVLITQKGKKVWINRVEQAKLSKYVGQLNAILFSPEDLE 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIE 187
           +       RRRF+D+    I+  +      + +++  +N  L +       D  +   + 
Sbjct: 123 LIKSAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQVFLDVLS 182

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            Q+A +  ++   R + +  LS    +     +    KL++         ++   ++E Y
Sbjct: 183 DQLAGIAAEVIFRRFKFLRYLSHYASDVYAHISLGGEKLAIAYHPSVSTIEADDTVEEIY 242

Query: 248 AKKL--FDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            K L  F+  K   M + T   GPHR D+      K   + + S G+Q+ + + + LA  
Sbjct: 243 QKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIALSVKLAEI 301

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD
Sbjct: 302 QLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYIHG-KTQTFITTTD 347


>gi|188535560|ref|YP_001909357.1| recombination protein F [Erwinia tasmaniensis Et1/99]
 gi|226737797|sp|B2VCE1|RECF_ERWT9 RecName: Full=DNA replication and repair protein recF
 gi|188030602|emb|CAO98497.1| DNA replication and repair protein RecF [Erwinia tasmaniensis
           Et1/99]
          Length = 361

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 150/361 (41%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R+   E    + +      D  VR   I+      V EL + L +  + P  
Sbjct: 66  DAFV-LHGRIATAEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR ++D   F  +P       +  RL++ RN  L +         + + +
Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +A L  +I+  R     A+++ I      +  P  +LS + F  G   +S       YA+
Sbjct: 181 LAPLAEQISQWRAAYSEAIAADISATC-AQFLPEFQLSFS-FQRGWDKES------HYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++D  +      +     S G+ K+++  + LA    ++ 
Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
             G   + L+D+ ++ LDE +R+ L   +    +Q+F++    + VFD  +E  K   + 
Sbjct: 292 QNGQRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMTDEKGKMFHVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|317494669|ref|ZP_07953081.1| DNA replication and repair protein RecF [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917271|gb|EFV38618.1| DNA replication and repair protein RecF [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 358

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 153/362 (42%), Gaps = 16/362 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LTIRDFRNIESADLAPAEGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDQ 65

Query: 70  PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
             F     R++ G E    + +      D  VR   I+      V EL + L +  + P 
Sbjct: 66  NEFV-LHGRIDTGAERELSVGLSKSRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPE 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
              + +G    RR FLD   F  DP       + +RL++ RN  L +     S     + 
Sbjct: 122 GFTLLNGGPKFRRAFLDWGCFHSDPGFFVAWSNLKRLLKQRNAALRQ-VTRYSQLRPWDQ 180

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++  L  +I+  R +   A++  I      +  P   L+ + F  G   +S      +Y 
Sbjct: 181 ELIPLAERISALRAQYSAAIAEDISATC-AQFLPEFALTFS-FQRGWDKES------DYV 232

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           + L    + D     T +GPH++D  +      +     S G+ K+++  + LA    ++
Sbjct: 233 ELLERQFERDRALTYTAVGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEYLT 291

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRI 367
             +G   + L+D+ ++ LD  +R  L   +   G+Q+F++  + + V D ++E  K  R+
Sbjct: 292 RHSGRRCLYLIDDFASELDTGRRRLLADRLKATGAQVFVSAVSAEQVSDMVDEKGKMFRV 351

Query: 368 SN 369
             
Sbjct: 352 EQ 353


>gi|237727469|ref|ZP_04557950.1| DNA replication and repair protein recF [Bacteroides sp. D4]
 gi|229434325|gb|EEO44402.1| DNA replication and repair protein recF [Bacteroides dorei
           5_1_36/D4]
          Length = 371

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 163/372 (43%), Gaps = 49/372 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N     L F  +   F+G NG+GKTN+L+A+ +LS    F +++   +  
Sbjct: 3   LKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLS----FCKSA---INP 55

Query: 67  IGSPS------FFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           I S +      FF      E  +G   ++   L+ R  +  +  +      +    L+ H
Sbjct: 56  IDSQNIRHEGDFFVIQGFYETNQGDPEEVYCGLKRRQKKQFKRNK------KEYSRLSDH 109

Query: 120 LRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TE 175
           +    LV   P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E
Sbjct: 110 IGFIPLVMVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSE 169

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYVQKENFPHIKLSL 228
              D       E  MA  G  +   R E I        +  S I +  +K N  +   ++
Sbjct: 170 QEPDEELMLVWEEMMAFAGEVVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAYESHAM 229

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
            G L          +KE         RK D +   +L G H+ DL++   D  I    GS
Sbjct: 230 NGNL-------LDIIKE--------SRKRDRIMGYSLRGIHKDDLVMQLGDFPIK-REGS 273

Query: 289 TGEQKVVLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIF 346
            G+ K  L+ + LA    +  T +   P+LLLD+I   LD  +   + ++V  D   QIF
Sbjct: 274 QGQNKTYLIALKLAQFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIF 333

Query: 347 MTGTDKSVFDSL 358
           +T T++   D +
Sbjct: 334 ITDTNRDHLDKI 345


>gi|310765872|gb|ADP10822.1| DNA replication and repair protein recF [Erwinia sp. Ejp617]
          Length = 397

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 149/361 (41%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 42  LLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDQ 101

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R+   E      +      D  VR   I+      V EL + L +  + P  
Sbjct: 102 DAFV-LHGRIRAAEREISAGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 157

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR ++D   F  +P       +  RL++ RN  L +         + + +
Sbjct: 158 FTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIRAWDQE 216

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +A L  +I+  R     A+++ I      +  P  +LS + F  G   +S      +YA 
Sbjct: 217 LAPLAEQISQWRAAYSKAIAADINATC-AQFLPEFQLSFS-FQRGWDKES------DYAG 268

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++D  +      +     S G+ K+++  + LA    ++ 
Sbjct: 269 LLERNFERDRAFTYTASGPHKADFRIRAQGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 327

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
             G   + L+D+ ++ LDE +R+ L   +    +Q+F++    + VFD  +E  K   + 
Sbjct: 328 QNGRRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMTDEKGKMFHVE 387

Query: 369 N 369
            
Sbjct: 388 Q 388


>gi|60680428|ref|YP_210572.1| putative DNA replication and repair protein [Bacteroides fragilis
           NCTC 9343]
 gi|81316502|sp|Q5LGW6|RECF_BACFN RecName: Full=DNA replication and repair protein recF
 gi|60491862|emb|CAH06620.1| putative DNA replication and repair protein [Bacteroides fragilis
           NCTC 9343]
          Length = 370

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 155/358 (43%), Gaps = 22/358 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +   R
Sbjct: 3   LKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                FF      E M+G   +I   ++ R  +  +  +      +    L+ H+    L
Sbjct: 63  -HEQDFFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKRNK------KEYSRLSDHIGFIPL 115

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
           V   P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +  
Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPIEEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  MA+ G  +   R   I+    +   +    +    ++ LT            
Sbjct: 176 LFLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLT--------YESH 227

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A K    + L + R  D +   +L G H+ +L +   D  I    GS G+ K  LV + L
Sbjct: 228 ARKASLLEVLKESRVRDKIMGYSLRGIHKDELNMLLGDFPIK-REGSQGQNKTYLVALKL 286

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358
           A    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +
Sbjct: 287 AQFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRI 344


>gi|302346673|ref|YP_003814971.1| DNA replication and repair protein RecF [Prevotella melaninogenica
           ATCC 25845]
 gi|302150770|gb|ADK97031.1| DNA replication and repair protein RecF [Prevotella melaninogenica
           ATCC 25845]
          Length = 368

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 165/387 (42%), Gaps = 63/387 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L+I  ++N  +  L   A+   F+G NG GKTN+L+A+ +LS  +       ++V
Sbjct: 1   MQLEKLSIINYKNIQAATLNLSAKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSFF-------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
            R  +  F         T    +   G+   S K   R+ +  +              L+
Sbjct: 61  MRHDADYFVLEGDYCTDTGEHEQVYCGMKRGSKKHFKRNKKEYK-------------RLS 107

Query: 118 KHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL- 173
           +H+ +  L+   P+   +  G S ERR+ +D ++   D  +   +  + + ++ RN LL 
Sbjct: 108 QHIGLVPLIFVSPADATLIEGGSEERRKLMDVVISQYDTPYIESLSRYNKALQQRNSLLK 167

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            E   D++    +E QMAE G  +   R   +  L+ +                      
Sbjct: 168 QEEEPDATLLELLEMQMAEHGEAVYKKRAAFVEELTPVFQ-------------------- 207

Query: 234 GKFDQSFCALKE----EYAKKLFDGRKMDSMSR---------RTLIGPHRSDLIVDYCDK 280
            +  Q+ C+ +E    EY      G  +D + R          +L G H+ DL++     
Sbjct: 208 -RIYQTICSEREQVSLEYVSHCQRGDLLDVIQRDRAKDRIMGYSLHGTHKDDLVMKLGGY 266

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVT 339
            +    GS G+ K  ++ + LA    +  T G   P+LLLD+I   LD  +   + R+V+
Sbjct: 267 PMK-REGSQGQNKTYVLALKLAQFDFLRRTAGNNTPLLLLDDIFDKLDSSRVEQIVRLVS 325

Query: 340 --DIGSQIFMTGTDKSVFDSLNETAKF 364
             D G QIF+T T++   D + + + F
Sbjct: 326 GDDFG-QIFITDTNRDHLDKILQGSGF 351


>gi|312193900|ref|YP_004013961.1| DNA replication and repair protein RecF [Frankia sp. EuI1c]
 gi|311225236|gb|ADP78091.1| DNA replication and repair protein RecF [Frankia sp. EuI1c]
          Length = 374

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 157/359 (43%), Gaps = 26/359 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FR+Y +L L   A    FVG NG GKTN+LEA+ +++     R +  A +
Sbjct: 1   MHVTHLQLVDFRSYPALELTLPAGVVTFVGANGQGKTNLLEAVGYVATLGSHRVSGDAPL 60

Query: 65  TRIGSPSFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+         V G    LA+I I +  R ++    +++N   +    EL   L + 
Sbjct: 61  IREGAERAVIRSRIVNGDRAALAEIEI-VTGRANK----VRLNRRPLSRPRELLGLLSVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    +  G   ERRRFLD ++ A  PR    + D+ER++R R  LL   + D    
Sbjct: 116 LFAPEDLAMVKGDPGERRRFLDELLVARTPRLAAVIADYERVLRQRTTLL-RAHGDLRTL 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIM------------EYVQKENFPHIKLSLTGF 231
            S +  +A  G ++  AR+ +++ L   +             +  +K      +  +   
Sbjct: 175 ESWDEALARHGAELLAARLALVDDLRPRVQAAYAAVAGTADEDATEKGVGVDYRCGVELP 234

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
                D    AL EE A+     R  +     TL+GPHR +L +    +     + S GE
Sbjct: 235 EGADRDAIAAALIEELARV----RPREIERGVTLVGPHRDELALAVGGRPAR-GYASHGE 289

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              + + + LA   L+      AP+LLLD++ A LD  +R  L  +V     Q+ +T  
Sbjct: 290 SWSLALALRLASYELL-EADDRAPVLLLDDVFAELDAHRRRRLAELVAP-AEQVLITAA 346


>gi|308188763|ref|YP_003932894.1| DNA replication and repair protein recF [Pantoea vagans C9-1]
 gi|308059273|gb|ADO11445.1| DNA replication and repair protein recF [Pantoea vagans C9-1]
          Length = 361

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 149/361 (41%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEQADLQLAPGFNFLVGVNGSGKTSVLEAIHTLGHGRSFRSLQAGRVIRHDE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R+E  E    + +      D  VR   I+      V EL + L +  + P  
Sbjct: 66  AAFV-LHGRLESKEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR ++D   F   P       +  RL++ RN  L +     S     + +
Sbjct: 122 FSLLNGGPKYRRAYVDWGCFHNTPGFFNAWNNMRRLLKQRNAALRQ-VSRYSQIRPWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E   A+S+ I      +  P  +L  + F  G   +S      +YA+
Sbjct: 181 LVPLAEQISQWRAEYSAAISAEITATC-AQFLPEFELRFS-FQRGWDKES------DYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++D  +      +     S G+ K+++  + LA    +++
Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTS 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAKFMRIS 368
            +G   I L+D+ ++ LDE +R  L   +    +Q+F++      V D  +E  K  R+ 
Sbjct: 292 QSGRRCIYLIDDFASELDESRRRLLADRLKATQAQVFVSAISAGHVIDMTDEKGKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|315187337|gb|EFU21093.1| DNA replication and repair protein RecF [Spirochaeta thermophila
           DSM 6578]
          Length = 363

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/351 (28%), Positives = 157/351 (44%), Gaps = 33/351 (9%)

Query: 9   FLNISE--FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYADVT 65
           FL I    FRN  +  +   A   +FVG+NG GKTNILE +  L  G  FR R +   +T
Sbjct: 2   FLTIGSEGFRNIVTGTIDVGAPVVVFVGENGQGKTNILELVYLLCYGVSFRTRQNTVLIT 61

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS-W 124
           R  S        R E  EG   + I +E     + + + +N+  I    EL     IS  
Sbjct: 62  RGRSSCRIHGEFRTE--EGYI-LPILVEI--GPTSKEIFLNEKKIANRKEL---FSISPC 113

Query: 125 LVPSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           +V + D I    G  +  R+F+++++  +DP     +  + R++  RN  L E   D   
Sbjct: 114 IVFAHDDIQFVVGSPLLHRQFMNQILTLVDPLFLDSLRTYNRILTSRNEALKEARED--L 171

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+A++  +I + R  M++A SS++    ++           GF    FD S+  
Sbjct: 172 LEVYDDQLADIAHQITVKRERMMDAFSSILRSTCEE----------FGFSGNVFDVSYRP 221

Query: 243 L-----KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                 KEE  + L   R  D M   T  GPHR  L+       +   + STGE +++ +
Sbjct: 222 SLRGDGKEELMRILRSERTQDLMVGFTRRGPHRDRLVFTMNGHPVP-DYASTGEIRLLSL 280

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            + +A    +  +TG  PILL D++   LD  KR  +  ++   G Q F T
Sbjct: 281 LLRVAQTTYVRESTGKTPILLFDDVLLELDPLKRRRVVEMIPH-GRQSFFT 330


>gi|255007766|ref|ZP_05279892.1| putative DNA replication and repair protein [Bacteroides fragilis
           3_1_12]
 gi|313145469|ref|ZP_07807662.1| DNA replication and repair protein recF [Bacteroides fragilis
           3_1_12]
 gi|313134236|gb|EFR51596.1| DNA replication and repair protein recF [Bacteroides fragilis
           3_1_12]
          Length = 370

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 158/373 (42%), Gaps = 26/373 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +   R
Sbjct: 3   LKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                FF      E M+G   +I   ++ R  +  +  +      +    L+ H+    L
Sbjct: 63  -HEQDFFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKRNK------KEYSRLSDHIGFIPL 115

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
           V   P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +  
Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  MA+ G  +   R   I+    +   +    +    ++ LT     +      
Sbjct: 176 LFLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHARGASLLE 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            LKE         R  D +   +L G H+ +L +   D  I    GS G+ K  LV + L
Sbjct: 236 VLKE--------SRVRDKIMGYSLRGIHKDELNMLLGDFPIK-REGSQGQNKTYLVALKL 286

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD---- 356
           A    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D    
Sbjct: 287 AQFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILY 346

Query: 357 SLNETAKFMRISN 369
            +    K  R+ N
Sbjct: 347 KVGSDYKMFRVEN 359


>gi|53712250|ref|YP_098242.1| DNA replication and repair protein RecF [Bacteroides fragilis
           YCH46]
 gi|253563714|ref|ZP_04841171.1| DNA replication and repair protein recF [Bacteroides sp. 3_2_5]
 gi|265762438|ref|ZP_06091006.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_16]
 gi|81690735|sp|Q64XR8|RECF_BACFR RecName: Full=DNA replication and repair protein recF
 gi|52215115|dbj|BAD47708.1| DNA replication and repair protein RecF [Bacteroides fragilis
           YCH46]
 gi|251947490|gb|EES87772.1| DNA replication and repair protein recF [Bacteroides sp. 3_2_5]
 gi|263255046|gb|EEZ26392.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_16]
          Length = 370

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 154/358 (43%), Gaps = 22/358 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +   R
Sbjct: 3   LKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                FF      E M+G   +I   ++ R  +  +  +      +    L+ H+    L
Sbjct: 63  -HEQDFFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKRNK------KEYSRLSDHIGFIPL 115

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
           V   P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +  
Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPIEEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  MA+ G  +   R   I+    +   +    +    ++ LT     +      
Sbjct: 176 LFLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHARNASLLE 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            LKE         R  D +   +L G H+ +L +   D  I    GS G+ K  LV + L
Sbjct: 236 VLKE--------SRVRDKIMGYSLRGIHKDELNMLLGDFPIK-REGSQGQNKTYLVALKL 286

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358
           A    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +
Sbjct: 287 AQFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRI 344


>gi|315657691|ref|ZP_07910573.1| recombination protein F [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492163|gb|EFU81772.1| recombination protein F [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 413

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 168/391 (42%), Gaps = 38/391 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT--RI 67
           L +  FR+Y  + L F A   +FVG NG GKTN+LEA+++L+     R  + A +    I
Sbjct: 6   LALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGLIFREI 65

Query: 68  G----SPSFFSTF---ARVEGMEGLADIS-----IKLETRDDRSVRCLQINDVVIRVVDE 115
           G    SP+        ARV     L D       +++E    R+ R + IN   +R    
Sbjct: 66  GDTVRSPATLRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNVRPRSL 124

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L  HL      P   ++  G  + RR FLDR+   + P     + ++ ++ R R   L +
Sbjct: 125 LG-HLSTVLFAPEDLQLVQGDPVTRRTFLDRIAIQLRPTLVGALGEYTKIARQRGAYLKD 183

Query: 176 -----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFP-HIKLSL 228
                   D    S  +  +  + V++   R  +I+ L+  +   Y +    P  + L+ 
Sbjct: 184 VAKRRAPIDEIQLSIWDDALVPVAVEVMRERARVIDQLAQFLPSVYARIAGHPAPVGLTY 243

Query: 229 TGFLDGKFDQSFCALKEEYA---------KKLFDGRKMDSMSRR-TLIGPHRSDLIVDYC 278
              +    + S    +E YA         ++    R  D   R   L+GPHR +L + + 
Sbjct: 244 ADSVTKTLELSADEQREMYANPELLSSVFRQALAQRHADEARRGVNLVGPHRDELEL-HL 302

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           +        S GE     + + LA   L+       P+LLLD++ A LDE +R AL   +
Sbjct: 303 NGLPVKGFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAALLWAI 362

Query: 339 TDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368
            D   Q+F+T  T   + ++L+  A F R++
Sbjct: 363 -DQADQVFITSATGTEIPEALH--AAFYRVT 390


>gi|72160410|ref|YP_288067.1| recombination protein F [Thermobifida fusca YX]
 gi|97181072|sp|Q47U20|RECF_THEFY RecName: Full=DNA replication and repair protein recF
 gi|71914142|gb|AAZ54044.1| DNA replication and repair protein RecF [Thermobifida fusca YX]
          Length = 377

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 156/360 (43%), Gaps = 22/360 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L ++++R+Y +  L  +   + F+G NG GKTN++EAI +++     R A  A +
Sbjct: 1   MHVSHLQLADYRSYEAAYLELEPGVSTFIGPNGQGKTNLVEAIGYVATHSSHRVAHDAPL 60

Query: 65  TRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+       A V  G   L    I+LE    R+ R         R+ D L   L   
Sbjct: 61  VRRGAQRAVIRAAVVRHGQTAL----IELEINPGRANRARLNRSPNTRMRDVLGI-LHTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175
              P    +  G   ERRRFLD ++ A  PR+     D+ER+++ RN LL          
Sbjct: 116 LFAPEDLALVKGDPGERRRFLDELLTARAPRYAGVRSDYERVLKQRNALLKSAAAQNLHH 175

Query: 176 -GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGF 231
            G  D       +  +A++G ++  AR+ ++  L  L  +   +       +SL      
Sbjct: 176 RGGRDLPTLDVWDEHLAQIGAELLAARLALVAELQPLAAKAYGELTATQDPISLRYRCSA 235

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTG 290
            D + D +      E  +      + D + R  +L+GPHR DL + + +      + S G
Sbjct: 236 TDEELDTTNRPQLVEILRAALLRARPDELRRGVSLVGPHRDDLQL-WLNDLPAKGYASQG 294

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           E     + + LA   L+    G  P+LLLD++ A LD ++R  L   V     Q+ +T  
Sbjct: 295 ESWSYALALRLAGFELL-RADGDDPVLLLDDVFAELDAERRRRLASYVR-TAEQVLVTAA 352


>gi|325922761|ref|ZP_08184495.1| DNA replication and repair protein RecF [Xanthomonas gardneri ATCC
           19865]
 gi|325546757|gb|EGD17877.1| DNA replication and repair protein RecF [Xanthomonas gardneri ATCC
           19865]
          Length = 368

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 147/344 (42%), Gaps = 12/344 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      + + G+
Sbjct: 6   LSIHRLRRFQTVELYPASSLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                     E     ++ S +   R        +++   +  +  L   L +    P  
Sbjct: 66  DDLEVFVEWRERSGETSERSRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 125

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + SG    RRRFLD  +F ++P        + R ++ RN LL +G        + + +
Sbjct: 126 HVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQGA-QPRMLDAWDHE 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +AE G  +   R+  ++ L   ++  V     P + LS   F  G + +   +L    A 
Sbjct: 185 LAESGESLTSRRLRYLDRLQERLIP-VATAIAPSLGLSALTFAPG-WKRHEVSL----AD 238

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIV--DYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
            L   R+ D  +  T  GPHR+D     D      T+   S G+ K+  +   LA A   
Sbjct: 239 ALLLARERDRQNGYTSQGPHRADWTPAFDALPGKDTL---SRGQAKLTALACLLAQAEDF 295

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           ++  G  P++ LD++ + LD   +  + + +    +Q+ +T T+
Sbjct: 296 AHERGEWPVIALDDLGSELDRHHQARVLQRLASAPAQVLITATE 339


>gi|297193293|ref|ZP_06910691.1| recombination protein F [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151726|gb|EDY62300.2| recombination protein F [Streptomyces pristinaespiralis ATCC 25486]
          Length = 286

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 13/216 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 13  MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLASHRVSSDAPL 72

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R    +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 73  VRMGA---DRAVIRAAVTQGERSQLVELELNPGRANRARINRSSQVRPRDVLGI-VRTVL 128

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD +V A  PR      D+ER+++ RN LL           
Sbjct: 129 FAPEDLSLVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARRHGG 188

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
              D S     +  +A  G ++   R+++I AL  L
Sbjct: 189 RGMDLSTLDVWDQHLARAGAEVTAQRLDLIAALQPL 224


>gi|82523805|emb|CAI78548.1| DNA replication and repair protein RecF [uncultured Chloroflexi
           bacterium]
          Length = 409

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 162/396 (40%), Gaps = 57/396 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ FRN+  L L       + VGDN  GKT++LEA+ +L+    F  +S   +  
Sbjct: 3   LTHLSLTNFRNFTRLDLDVPKGSILLVGDNAQGKTSLLEAVYYLATLVSFHASSDRQLIN 62

Query: 67  IGSPSFFSTFARVEGMEGLADIS-----IKLETR---DDRSVRCLQINDVVIR------- 111
                     AR+     +AD S       LE R   +      L  N   +R       
Sbjct: 63  FIEARQPLAVARI-----VADFSRGTNRHHLEIRLIQESNGQTSLNGNSTHVRKEVLLDG 117

Query: 112 -------VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                   V + N  L     +P M  +  G   ERRR+L+  +  +   +   + ++ +
Sbjct: 118 VKCKASTAVGQFNAVL----FLPQMLGVIEGSPEERRRYLNLALAQVIAHYPAALSEYTK 173

Query: 165 LMRGRN---RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--- 218
            +  RN   +LL E   D +     + Q+   G ++  AR+  +  L  L +   ++   
Sbjct: 174 ALSQRNALLKLLNERQGDPAQLDYWDEQIVSNGAQLIYARIHAVQELERLAVRTHRELTR 233

Query: 219 -------------ENFPHIKLSLTGFLDGKFDQSFCAL---KEEYAKKLFDGRKMDSMSR 262
                        + FP         LD   D+S   L   ++ +A+ L   R  +    
Sbjct: 234 GAEVLRLNYQPSYDPFPVQPGQYALPLDSPVDRSGLTLEGIQQGFAENLNKLRPEEIARG 293

Query: 263 RTLIGPHRSDLIVDYCDKAITIA-HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
            T IGPHR +L   +    I +  +GS G+ +  ++ + +A    + + +G  P+LLLDE
Sbjct: 294 VTTIGPHRDEL--RFLANGIDLGTYGSRGQVRTAMLSLKIAEVGWMHHKSGQWPVLLLDE 351

Query: 322 ISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           + A LD ++R  L   +T    Q  +T TD  +F S
Sbjct: 352 VLAELDANRRQDLLERLTQ-SEQALLTTTDLDLFSS 386


>gi|21240777|ref|NP_640359.1| recombination protein F [Xanthomonas axonopodis pv. citri str. 306]
 gi|25453249|sp|Q8PRG0|RECF_XANAC RecName: Full=DNA replication and repair protein recF
 gi|21106041|gb|AAM34895.1| DNA replication and repair RecF protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 368

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 8/342 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      + + G+
Sbjct: 6   LSIHRLRRFQTVELHPSSALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                     EG     + + +   R        +++   +  +  L   L +    P  
Sbjct: 66  NDLEVFVEWKEGGGAAVERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 125

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + SG    RRRFLD  +F ++P        + R ++ RN LL +G        + + +
Sbjct: 126 HVLISGGGEPRRRFLDWGLFHVEPDFLTLWRRYARALKQRNALLKQGA-QPRMLDAWDNE 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +AE G  +   R+  +  L   ++  V     P + LS   F  G + +   +L    A 
Sbjct: 185 LAESGETLTSRRMRYLERLQDRLVP-VADAIAPALGLSALTFAPG-WKRHEVSL----AD 238

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L   R+ D  +  T  GPHR+D +  +       A  S G+ K+  +   LA A   + 
Sbjct: 239 ALLLARERDRQNGYTSQGPHRADWMPSFHALPGKDAL-SRGQAKLTALACLLAQAEDFAF 297

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             G  P++ LD++ + LD   +  + + +    +Q+ +T T+
Sbjct: 298 ERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATE 339


>gi|311277335|ref|YP_003939566.1| DNA replication and repair protein RecF [Enterobacter cloacae SCF1]
 gi|308746530|gb|ADO46282.1| DNA replication and repair protein RecF [Enterobacter cloacae SCF1]
          Length = 357

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 155/362 (42%), Gaps = 21/362 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            SF     R++G      I +  +   D  VR   I+      V EL   + +  + P  
Sbjct: 66  ESFV-LHGRLQGETRETAIGLTKDKLGDSKVR---IDGTDGHKVAELALLMPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186
             + +G    RR FLD   F  +        + +RL++ RN   R +T       W    
Sbjct: 122 FTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    ++  + +   ++  P   L+ + F  G   ++      +
Sbjct: 178 DRELIPLAEQISAWRAEYSAGIADDMADTC-RQFLPEFSLTFS-FQRGWEKET------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 230 YAEVLERNFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 289 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348

Query: 366 RI 367
            +
Sbjct: 349 TV 350


>gi|86738727|ref|YP_479127.1| recombination protein F [Frankia sp. CcI3]
 gi|86565589|gb|ABD09398.1| DNA replication and repair protein RecF [Frankia sp. CcI3]
          Length = 399

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 160/381 (41%), Gaps = 42/381 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+Y +L L        FVG NG GKTN++EAIS+++     R A  A +
Sbjct: 1   MHLTHLSLVDFRSYPALDLTLGPGVATFVGGNGQGKTNVIEAISYVATLASHRVAGDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ S     AR+  + G     +++E    ++ R  ++N   +    ++   L    
Sbjct: 61  VRDGA-SRAVIRARI--VRGDRAALVEIEIVPGKANRA-RLNRAPVARPRDIVGLLCTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEG 176
             P    +  G   +RR+FLD ++ A  PR    + D++R+++ R+ LL          G
Sbjct: 117 FAPEDLALVKGDPAQRRQFLDELLIARTPRMAAVLADYDRVLKQRSTLLRTAGTARRAGG 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINAL---------------SSLIMEYVQKENF 221
             D       +  +A  G ++  AR+ +++AL               S+  ++Y      
Sbjct: 177 QGDLRTLDVWDGYLAAHGAEVLAARLALVDALRPAVAAAYEAVAGAESATALDYRSSVTL 236

Query: 222 PHI---------KLSLTGFLDGKFDQSF---CALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
           P I                  G+ D +      L E     L   R  +     TL+GPH
Sbjct: 237 PDILHASGPPGPPGQPEQPGAGRPDPAAPDRTMLAEAIRADLEAARPREVERGMTLVGPH 296

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           R DL++   +      + S GE   + + + LA   L+       P+LLLD++ A LD  
Sbjct: 297 RDDLLLS-INGLPARGYASHGESWSLALALKLASFDLL-RADDREPVLLLDDVFAELDTR 354

Query: 330 KRNALFRIVTDIGSQIFMTGT 350
           +R  L  +V     Q+ +T  
Sbjct: 355 RRGRLAELVAS-AEQVLVTAA 374


>gi|262371171|ref|ZP_06064492.1| recombinational DNA repair ATPase [Acinetobacter johnsonii SH046]
 gi|262313901|gb|EEY94947.1| recombinational DNA repair ATPase [Acinetobacter johnsonii SH046]
          Length = 360

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 164/377 (43%), Gaps = 33/377 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASY 61
           ++I  LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR      Y
Sbjct: 1   MQITRLNIERVRNLRTVALHGLQPFNVFYGQNGSGKTSILEAIHLLATGRSFRTHIPKHY 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                  +  F  + +   GM+ L               + +++N   I    +L K L 
Sbjct: 61  IQTDTQDAIVFAQSSSEKIGMQKLLS-----------GEQLIKVNGDNIATQGQLAKILP 109

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDS 180
           +  + P    I    +  RR+ LD ++F ++P        + R ++ RN LL T      
Sbjct: 110 LQLIDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYHAWQYYSRALKQRNSLLKTRRNLSL 169

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +        + + G  ++  RV ++        + + K   P I++ L  +  G F    
Sbjct: 170 ADLEPWNKMLGDYGEMLHSQRVSIVEQWKGFFEQDL-KHLLPDIEVQLE-YSPG-FHTEV 226

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC--DKAITIAHGSTGEQKVVLVG 298
             L +     L    + D   R T  GPH++DL +     D  + +   S G++K++++ 
Sbjct: 227 GLLHD-----LQSHHQKDLERRYTEYGPHKADLRLKTSLGDADVVL---SRGQKKLLIIA 278

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + L+   ++ +      ++LLD+++A LD   +  L   ++ +GSQ+F+T  +   ++S+
Sbjct: 279 LKLSQIAML-HACNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFITTLE---YESV 334

Query: 359 NETAKFMRISNHQALCI 375
                 + IS +Q  C+
Sbjct: 335 KNHLHDLSIS-YQLFCV 350


>gi|260912771|ref|ZP_05919257.1| recombination protein F [Pasteurella dagmatis ATCC 43325]
 gi|260633149|gb|EEX51314.1| recombination protein F [Pasteurella dagmatis ATCC 43325]
          Length = 358

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 159/366 (43%), Gaps = 15/366 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I  FRN  ++ L FD      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLIENFRNLTAVDLEFDRGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P F    A+++       + ++ + R   S+  +++N      + +L   L +  
Sbjct: 61  ISYEQPHFI-LHAKIQEQNHQWSVGLQ-KLRQGNSL--VKVNGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F          ++  RL++ RN  L +    S    
Sbjct: 117 ITPEGLILLNGGPSYRRAFLDWGLFHHHNHFHLAWVNLNRLLKQRNAALQQVTHYSE-LE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ +L  +++  R E   AL   I E   +   P +++S++      F Q +    
Sbjct: 176 IWDRELVKLAQQVSEWRKEYAEALRPEI-EQTCRLFLPELEISVS------FHQGW-EKD 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 RDYAELLATNFERDRAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
             +        + L+D+ ++ LDE KR  L   +   GSQ+F+T   +S    +  E  +
Sbjct: 287 EHLMKQKQRHCLFLIDDFASELDEHKRALLAERLKQSGSQVFVTAITESQLKQMQPEKHR 346

Query: 364 FMRISN 369
             R+ N
Sbjct: 347 TFRVEN 352


>gi|304398066|ref|ZP_07379941.1| DNA replication and repair protein RecF [Pantoea sp. aB]
 gi|304354352|gb|EFM18724.1| DNA replication and repair protein RecF [Pantoea sp. aB]
          Length = 361

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 148/361 (40%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEQADLQLAPGFNFLVGANGSGKTSVLEAIHTLGHGRSFRSLQAGRVIRHDE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R+E  E    + +      D  VR   I+      V EL + L +  + P  
Sbjct: 66  AAFV-LHGRLENAEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR ++D   F   P       +  RL++ RN  L +     S     + +
Sbjct: 122 FSLLNGGPKYRRAYVDWGCFHNTPGFFNAWNNMRRLLKQRNAALRQ-VSRYSQIRPWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R E   A+S+ I      +  P  +L  + F  G   +S      +Y +
Sbjct: 181 LVPLAEQISQWRAEYSAAISAEITATC-SQFLPEFELRFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++D  +      +     S G+ K+++  + LA    +++
Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTS 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAKFMRIS 368
            +G   I L+D+ ++ LDE +R  L   +    +Q+F++      V D  +E  K  R+ 
Sbjct: 292 QSGRRCIYLIDDFASELDESRRRLLADRLKATQAQVFVSAISAGHVIDMTDEKGKMFRVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|254515867|ref|ZP_05127927.1| DNA replication, recombinaison and repair protein [gamma
           proteobacterium NOR5-3]
 gi|219675589|gb|EED31955.1| DNA replication, recombinaison and repair protein [gamma
           proteobacterium NOR5-3]
          Length = 370

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 149/355 (41%), Gaps = 30/355 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           LNI   RN     L   + H +  G NG GKT++LEA   L   R FR      +   G 
Sbjct: 7   LNIHHLRNLTEASLGPLSLHNVIYGINGSGKTSLLEAAHILGTARSFRAGGAKSLITHGE 66

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            ++     R     G   + ++ +     S+R   +     R V +L   L +  +    
Sbjct: 67  QTYVVQGNRESPGGGCVSLGVQRQKGGGMSLR---VAGEPSRSVSQLADELPLLLINADS 123

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPR---HRRRMIDFERLMRGRNRLLTEGYFDSS----W 182
             +  G    RRRF+D  VF ++     HRRR   F+R +  RN LL  G  D+S    W
Sbjct: 124 FDLLVGEPANRRRFMDWGVFHVEHNLRDHRRR---FQRALTQRNHLLRRGKLDASELEVW 180

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              + A  AEL   ++  R   + AL   + E +  E  P I     G +D  + + + A
Sbjct: 181 TRDL-AVHAEL---VSAGRDRFLAALKE-VFEPLVNELAPEI-----GPVDLAYRRGWDA 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIF 300
               YA  L      D     T  GP R+D+   V     A T+   S G+QK+++  + 
Sbjct: 231 -SLGYADALQRSLASDQEQGFTQSGPQRADIRVTVGGYSAADTL---SRGQQKLLICALK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           LA  ++++   G   + L+D++ + LD ++   + R +  +  Q  +T   +S  
Sbjct: 287 LAQGQILAGQRGGV-LYLIDDLPSELDAERCERVCRALAAMRVQTLITCVSRSAI 340


>gi|183603361|ref|ZP_02711713.2| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC1087-00]
 gi|183569922|gb|EDT90450.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC1087-00]
          Length = 327

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 147/337 (43%), Gaps = 22/337 (6%)

Query: 43  ILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           +LEAI FL+  R  R  +  ++              + G+      SI LE    +  R 
Sbjct: 1   MLEAIYFLALTRSHRTRTDKNLIHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRV 55

Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
            ++N +    + +   H+ +    P   ++  G    RR+F+D  +  I P +   + ++
Sbjct: 56  TKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNY 115

Query: 163 ERLMRGRNRLLTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             +++ RN  L      D ++ S ++ Q+ + G ++   R++ I  L S    + +K++F
Sbjct: 116 NHILKQRNTYLKSVQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHF 171

Query: 222 P------HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
                   + +S    ++    Q+   L E +   L   R  D   + T +GPHR D  +
Sbjct: 172 ELSNQIEELSISYQSSVNITDKQN---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--I 226

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
            +    +  + GS G+ + +++ I LA   L+ + T  +PILLLD++ + LD  ++  L 
Sbjct: 227 SFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLL 286

Query: 336 RIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
             ++    Q F+T T      +L E      I N +A
Sbjct: 287 ETISQ-SIQTFITTTSLDHLQNLPENLSIFTIQNGKA 322


>gi|313765023|gb|EFS36387.1| recombination protein F [Propionibacterium acnes HL013PA1]
 gi|313815420|gb|EFS53134.1| recombination protein F [Propionibacterium acnes HL059PA1]
 gi|314916216|gb|EFS80047.1| recombination protein F [Propionibacterium acnes HL005PA4]
 gi|314917483|gb|EFS81314.1| recombination protein F [Propionibacterium acnes HL050PA1]
 gi|314921819|gb|EFS85650.1| recombination protein F [Propionibacterium acnes HL050PA3]
 gi|314930916|gb|EFS94747.1| recombination protein F [Propionibacterium acnes HL067PA1]
 gi|314955288|gb|EFS99693.1| recombination protein F [Propionibacterium acnes HL027PA1]
 gi|314959161|gb|EFT03263.1| recombination protein F [Propionibacterium acnes HL002PA1]
 gi|315099339|gb|EFT71315.1| recombination protein F [Propionibacterium acnes HL059PA2]
 gi|315102320|gb|EFT74296.1| recombination protein F [Propionibacterium acnes HL046PA1]
 gi|327454255|gb|EGF00910.1| recombination protein F [Propionibacterium acnes HL087PA3]
 gi|327456315|gb|EGF02970.1| recombination protein F [Propionibacterium acnes HL083PA2]
 gi|328756013|gb|EGF69629.1| recombination protein F [Propionibacterium acnes HL087PA1]
 gi|328758856|gb|EGF72472.1| recombination protein F [Propionibacterium acnes HL025PA2]
          Length = 401

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 167/370 (45%), Gaps = 28/370 (7%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175
              P+   +  G   +RR FLD +V    PR      D+ R+++ RN LL        + 
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYARVLKQRNALLKSLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---- 231
           G    +     + ++A +G ++  AR++ ++A+  L      +E  P   L+   +    
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPLT-SAAYREIAPVNDLTTASYKSTI 244

Query: 232 -LDGKF------DQSFCALKEEYAKKLFD---GRKMDSMSRR-TLIGPHRSDLIVDYCDK 280
            L+G +      + S    ++E A +  D    R+ D + R  TL+GP R D+I+ +  +
Sbjct: 245 DLEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGE 303

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V  
Sbjct: 304 MPAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362

Query: 341 IGSQIFMTGT 350
              Q+ +T  
Sbjct: 363 -ADQVLVTAA 371


>gi|17230866|ref|NP_487414.1| recombination protein F [Nostoc sp. PCC 7120]
 gi|20978593|sp|Q8YRR9|RECF_ANASP RecName: Full=DNA replication and repair protein recF
 gi|17132469|dbj|BAB75073.1| DNA repair and genetic recombination protein [Nostoc sp. PCC 7120]
          Length = 376

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 176/376 (46%), Gaps = 50/376 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  FRNY   ++ F A  TI VG+N  GK+N+LEA+  L+  R  R A   D  +
Sbjct: 3   LKTLHLRHFRNYYDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMARDRDFVQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              P      A +E   G++D+S+ L  R+ R  R + +N       + L + +    ++
Sbjct: 63  EEEP-VAQINATLERDTGVSDLSLILR-RNGR--RTVALNG------EPLRRQMDFLGVL 112

Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            ++   FS L +E        RR +LD ++  ++P +   +  + +++R RN  L +   
Sbjct: 113 NAVQ--FSSLDLELVRGSPEVRRNWLDTLLIQLEPVYAHILQQYNQVLRQRNAYL-KKLQ 169

Query: 179 DSSWCSS------IEAQMAELGVKI-------NIARVEMINALSSLI---MEYVQKENFP 222
           DS+  +        +AQ+   G K+             +  A  + I    E +Q    P
Sbjct: 170 DSALTTQDSALAIWDAQLVTTGTKVIRRRDRALARLAPLATAWHTSISGSTEVLQINYTP 229

Query: 223 HIKLSLTGFLDGKFDQSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           +++  L      +  Q+F + L++    +++ G         TL+GPHR ++ +   ++ 
Sbjct: 230 NVQ--LVKNQPEEVQQAFLSQLQQRAVPEIYRG--------TTLVGPHRDEVELT-INQT 278

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               +GS G+Q+ +++ + LA  +LI       P+LLLD++ A LD  ++N L   + D 
Sbjct: 279 PARQYGSQGQQRTLVLALKLAELQLIEEVVKEPPLLLLDDVLAELDPSRQNQLLDTIQD- 337

Query: 342 GSQIFMTGTDKSVFDS 357
             Q  +T T  S FD+
Sbjct: 338 RFQTLITTTHLSSFDA 353


>gi|323703939|ref|ZP_08115569.1| DNA replication and repair protein RecF [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531097|gb|EGB21006.1| DNA replication and repair protein RecF [Desulfotomaculum
           nigrificans DSM 574]
          Length = 367

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 159/377 (42%), Gaps = 31/377 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + ++ FRNYA +         I  G N  GKTN+LE+I +   G  FR     DV
Sbjct: 1   MRVENITLNNFRNYAKVSFKPHPSINIITGHNAQGKTNLLESIYYSLKGHSFRADRDRDV 60

Query: 65  TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +   +T   V   + L    IK   +  R    L   +V    +D+      + 
Sbjct: 61  IKWQQETAVINTEIMVSSRQFLIQWLIKASGKKFR----LNGTEVPRAELDQFG----VV 112

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDS 180
              P    +  G   ERRRFLD  V  + P +      + R++  RN LL E      + 
Sbjct: 113 LFCPEDLYLVKGSPQERRRFLDLEVGPLHPGYSHACRQYARVLSQRNILLKEIRGRQANP 172

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHIKLSLTG 230
                 + Q+   G ++   R++++  L  +           +E +Q +    + L L+ 
Sbjct: 173 DILDIWDEQLYRHGARVIFLRLQVLKKLIPVARSIHLELTNGLEQLQAKYLSSLVLDLS- 231

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           F + +  Q F     + AK++   RK++    +TL+GPHR D+ +   + A     GS G
Sbjct: 232 FSEEQIYQVFS----QAAKQI---RKLEIDRCQTLLGPHRDDISLA-INGAEAKTFGSQG 283

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+ V + + L+   L     G  P+LLLD++   LD +++  L   + D       T  
Sbjct: 284 QQRTVTLSLKLSVLELWYREFGHYPVLLLDDVLFELDHNRQTMLLDKLQDKVQTFITTSF 343

Query: 351 DKSVFDSLNETAKFMRI 367
              + + + +  +  R+
Sbjct: 344 PGGIDNQIKQVGQVWRV 360


>gi|1262354|emb|CAA94710.1| RecF [Mycobacterium leprae]
          Length = 385

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 160/362 (44%), Gaps = 32/362 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++   + +FR++  + L  +   T+F G NG GKTN++EA+ + +     R  +   + R
Sbjct: 3   VRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPLIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    EG E     +I LE    R+ R  ++N  ++R + E+   LR    
Sbjct: 63  AGTIRAIVSTIVVNEGRE----CAIDLEIAAGRANRA-RLNRSLVRGMREVVGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----------E 175
            P    +  G    RRR+LD +     P       D+++++R R  LL           +
Sbjct: 118 APEDLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRLALLKSLAAARYRSDQ 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLD 233
           G  D+      + ++AE G ++  AR++++N L+  + +  Q          +S    LD
Sbjct: 178 GVLDT--LDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQLLAPGSRTASISYRASLD 235

Query: 234 -------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                  G  D++   L+ +    L   R ++      L+GPHR +L +   D+      
Sbjct: 236 IGGIAGVGSSDRAL--LQADLLAGLSTRRNVELERGICLVGPHRDELELRLGDQPAK-GF 292

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE   + + + LA   L+    G  P+LLLD++ A LD  +  AL   V +   Q+ 
Sbjct: 293 ASHGESWSLAIALRLAAYELL-RADGNEPVLLLDDVFAELDAARCRALA-TVAESAEQVL 350

Query: 347 MT 348
           +T
Sbjct: 351 VT 352


>gi|288802280|ref|ZP_06407720.1| RecF protein [Prevotella melaninogenica D18]
 gi|288335247|gb|EFC73682.1| RecF protein [Prevotella melaninogenica D18]
          Length = 368

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 167/387 (43%), Gaps = 63/387 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L+I  ++N  +  L   A+   F+G NG GKTN+L+A+ +LS  +       ++V
Sbjct: 1   MQLEKLSIINYKNIQAATLNLSAKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSF-----FSTFA--RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
            R  +  F     + T A    +   G+   S K   R+ +  +              L+
Sbjct: 61  MRHDADYFVLEGDYCTDAGEHEQVYCGMKRGSKKHFKRNKKEYK-------------RLS 107

Query: 118 KHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL- 173
           +H+ +  L+   P+   +  G S ERR+ +D ++   D  +   +  + + ++ RN LL 
Sbjct: 108 QHIGLVPLIFVSPADATLIEGGSEERRKLMDVVISQYDTPYIESLSRYNKALQQRNSLLK 167

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            E   D++    +E QMAE G  +   R   +  L+ +                      
Sbjct: 168 QEEEPDATLLELLEMQMAEHGEAVYKKRAAFVEELTPVFQ-------------------- 207

Query: 234 GKFDQSFCALKE----EYAKKLFDGRKMDSMSR---------RTLIGPHRSDLIVDYCDK 280
            +  Q+ C+ +E    EY      G  +D + R          +L G H+ DL++     
Sbjct: 208 -RIYQTICSEREQVSLEYVSHCQRGDLLDVIQRDRAKDRIMGYSLHGTHKDDLVMKLGGY 266

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVT 339
            +    GS G+ K  ++ + LA    +  T G   P+LLLD+I   LD  +   + R+V+
Sbjct: 267 PMK-REGSQGQNKTYVLALKLAQFDFLRRTAGNNTPLLLLDDIFDKLDSSRVEQIVRLVS 325

Query: 340 --DIGSQIFMTGTDKSVFDSLNETAKF 364
             D G QIF+T T++   D + + + F
Sbjct: 326 GDDFG-QIFITDTNRDHLDKILQGSGF 351


>gi|148271182|ref|YP_001220743.1| recombination protein F [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166220703|sp|A5CLT6|RECF_CLAM3 RecName: Full=DNA replication and repair protein recF
 gi|147829112|emb|CAN00009.1| DNA replication and repair protein RecF [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 404

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 163/380 (42%), Gaps = 53/380 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++ +FRNY    +      T+FVG NG GKTN++EA+ FLS     R ++   + R
Sbjct: 3   VRHLSLGDFRNYTRADVALLPGATLFVGSNGQGKTNLVEALGFLSTLGSHRVSTDQALIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWL 125
            G+ S     A +  +   A   +++E + +RS     Q+N    +   EL ++      
Sbjct: 63  QGAES-----AVIRALLQHAGRELRVEVQINRSAANRAQVNSTPTK-PRELPRYFSSVLF 116

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    +  G    RRR LD+++    PR    + D++R ++ RN LL            
Sbjct: 117 APEDLALVRGDPSGRRRLLDQLLVLRTPRLAGVLSDYDRALKQRNTLLKSARARGMKADQ 176

Query: 186 I------EAQMAELGVKINIARVEMINALSSLI----MEYVQKENFPHIKLSL------- 228
           +      + ++  +G +I  AR  ++ AL   +    +     ++ P  +  L       
Sbjct: 177 LGTLDIWDERLVAIGSQIIAARGALVEALQPELARAYLAVAGSDHGPSARPELSILADDP 236

Query: 229 --------TGFLD-GKFDQS-------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
                   TG  D G+F +S         A+     ++L  G         TL+GPHR D
Sbjct: 237 GEDDIADETGARDGGRFTRSDDVVPVFTAAIARMRPRELERG--------LTLVGPHRDD 288

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI--SNTTGFAPILLLDEISAHLDEDK 330
           ++    +      + S GE     + + LA A L+   + TG  P+L+LD++ A LD+ +
Sbjct: 289 VLF-RLNGLPAKGYASHGESWSFALALKLASAELLRRDSQTG-DPVLILDDVFAELDQAR 346

Query: 331 RNALFRIVTDIGSQIFMTGT 350
           R  L   VT    Q+ +T  
Sbjct: 347 RGRLAEAVTGF-EQVLITAA 365


>gi|302870735|ref|YP_003839371.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302573594|gb|ADL41385.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 353

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 156/360 (43%), Gaps = 30/360 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + I  FR+Y      F  +  + VG+N  GKT++LEA+ F   G+ F+     DV  
Sbjct: 3   IKSIYIENFRSYHQSFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFKS---RDVDL 59

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWL 125
           I   +F S + ++E +  ++ +   +    DR + + + IND  +  + EL    +  + 
Sbjct: 60  I---NFDSQYFKLEMVAEVSGVEYAVGCYVDRMLEKGIMINDKKVNRLSELITLFKFVFF 116

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P    +       RRRFLD  V  + P   +   ++++ +  RN  L + Y        
Sbjct: 117 EPDTTELVKRQPKLRRRFLDMEVAKLYPYMTKVYQEYQKALLSRNAFL-KSYDKKDIIDV 175

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA-LK 244
            + Q++ LG  I   R E+I  LS        +  F H+       L+ ++  S  A  +
Sbjct: 176 YDVQLSHLGFLILSKRQEVIKKLSG-----EAQRIFGHV-FENKSLLELEYLPSIAASSE 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           EEY  +L      D     T  G HR D  +   D    +   S G+ K+  V + LA A
Sbjct: 230 EEYYTELKRCLIKDLNFGYTTRGVHRDDFEI-LIDGKPALDFASEGQIKLAAVSVVLASA 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-------KSVFDS 357
            L        P+L+LD++ + LD  KR  L   ++   S  F+T  +       +S+FDS
Sbjct: 289 ALYEK-----PVLILDDVFSELDCQKRKNLVMFLSQYQS--FVTSAEDLRSLQSESIFDS 341


>gi|260890885|ref|ZP_05902148.1| RECF protein [Leptotrichia hofstadii F0254]
 gi|260859438|gb|EEX73938.1| RECF protein [Leptotrichia hofstadii F0254]
          Length = 324

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 142/321 (44%), Gaps = 20/321 (6%)

Query: 22  RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF--FSTFARV 79
           +L FD    +  G NG GKT+++EA+ FL+ G+ FR     ++ +        F  +   
Sbjct: 4   KLKFDRYFNLIYGKNGQGKTSLIEAVHFLATGKSFRTKKVKEIRKYNLNRLIVFGKYRHK 63

Query: 80  EGMEGLADISIKLETRD---DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL 136
           +  E    I +  + +D   DR  +   IN V +         L I   +P    +  G 
Sbjct: 64  DLSENAIAIDVNEDKKDFYIDRE-KNKYINYVGL---------LNIISFIPEDIELIIGN 113

Query: 137 SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
              RR F +  +      + + +++FE++++ RN+L+ E             +  E G+ 
Sbjct: 114 PGVRRNFFNYEISQAKKEYLQSIVNFEKILKVRNKLIKEKKTGEEIYKIYNEKFIEEGLN 173

Query: 197 INIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
           I + R E I  LS L+    +K   EN   +KL    FL     ++   LKE++      
Sbjct: 174 IVLNRREFIKKLSILLNLNYRKLFDEN-SELKLKYDCFLGDVEKKTREELKEKFEVLCKR 232

Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
             + +     +L+GP + D I +   K    A+ S GE+K ++  + ++   ++      
Sbjct: 233 KSEREKFLGYSLLGPQKDDFIFELNGKNAK-AYSSQGEKKSIIFSLKISEIDILIKEKKE 291

Query: 314 APILLLDEISAHLDEDKRNAL 334
            PI ++D+I+++ DE ++ ++
Sbjct: 292 YPIFIMDDIASYFDEVRKKSI 312


>gi|332827263|gb|EGK00033.1| hypothetical protein HMPREF9455_03622 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 368

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 155/358 (43%), Gaps = 29/358 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  ++N     L    +   F+G NG+GKTN+L+AI +LS  +            I S
Sbjct: 6   LSILNYKNIEQAELTLSPKINCFLGSNGMGKTNLLDAIYYLSFSKSHNNP-------IDS 58

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--IRVVDELNKHLRISWL 125
            +    + FA ++G   + D   +       S+R  Q        +  + L+ H+ +  L
Sbjct: 59  QNILHDAEFAVIQGWYEIGDKQEEFFC----SLRRKQKKQFKRNKKEYERLSDHIGLLPL 114

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
           V   PS   + +G S ERR+F+D  +   D  +   +I + + ++ RN LL  +   D +
Sbjct: 115 VMVSPSDTELINGGSDERRKFMDLFLSQFDKEYLYSLIRYNKALQQRNALLKVDAPVDDT 174

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + Q+A  G  I   R + I+            + F     S    ++ K++  F 
Sbjct: 175 LLGLWDEQLANEGKIIYRKRKDFIDKFIPTF------QKFYDFICSSNEKVELKYESHFE 228

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
               ++ + L   R+ D +   T  G H+ DL +     +I    GS G+ K  +V + L
Sbjct: 229 --NPDFPELLKSRRQRDKILGYTTAGIHKDDLDMQMDGYSIKRV-GSQGQNKTYVVALKL 285

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358
           A    +   T   P+LLLD+I   LD  +   + ++V D    QIF+T T++   D +
Sbjct: 286 AQFDFLHKATETTPVLLLDDIFDKLDSSRVEQIIKLVLDKDFGQIFVTDTNREHLDEI 343


>gi|329957035|ref|ZP_08297603.1| DNA replication and repair protein RecF [Bacteroides clarus YIT
           12056]
 gi|328523792|gb|EGF50884.1| DNA replication and repair protein RecF [Bacteroides clarus YIT
           12056]
          Length = 422

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 152/355 (42%), Gaps = 16/355 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F  +   F G NG+GKTN+L+A+ FLS  +       +   R
Sbjct: 47  LKRISILNYKNLEQVELAFSPKLNTFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 106

Query: 67  IGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                FF      E  +G  + I   ++ R  +  +  +      R+ D +   L +  +
Sbjct: 107 -HDADFFVIQGFYEAADGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVMV 162

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184
            P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +     
Sbjct: 163 SPADSALINGGSDERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKSETPVEEELFL 222

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             E  MA+ G  +   R E I     +   +    +    K+ LT     +       LK
Sbjct: 223 VWEEMMAQAGEVVFRKREEFIREFIPIFQSFYSFISQDKEKVGLTYDSHARDASLLEVLK 282

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E         R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA  
Sbjct: 283 E--------SRTRDQIMGFSLRGVHKDELNMLLGDFPIK-REGSQGQNKTYLVALKLAQF 333

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358
             +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +
Sbjct: 334 DFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRI 388


>gi|261868625|ref|YP_003256547.1| recombination protein F [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413957|gb|ACX83328.1| DNA replication and repair protein RecF [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 358

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 150/345 (43%), Gaps = 14/345 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN  ++ L  D      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLTVENFRNLQAVDLELDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDQPH-FTLFGQIQEQQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F              RL++ RN  L + Y  S    
Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVAFYNLWASLNRLLKQRNAALQQTYAYSQ-MK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ +L  +++  R +   AL   I E   +   P + +S++      F Q +   +
Sbjct: 176 IWDMELVKLAEQVSQLRADYALALQPEI-EQTCRLFLPELDISVS------FHQGWEK-E 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           + YA+ L    + D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 QHYAELLERNFERDRALGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMSALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
             +        I L+D+ ++ LD+ KR  L   + + GSQ+F+T 
Sbjct: 287 EHLMRQKQRHCIFLIDDFASELDQTKRRLLAERLQNSGSQVFVTA 331


>gi|193214559|ref|YP_001995758.1| DNA replication and repair protein RecF [Chloroherpeton thalassium
           ATCC 35110]
 gi|226737776|sp|B3QWU7|RECF_CHLT3 RecName: Full=DNA replication and repair protein recF
 gi|193088036|gb|ACF13311.1| DNA replication and repair protein RecF [Chloroherpeton thalassium
           ATCC 35110]
          Length = 368

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 158/369 (42%), Gaps = 23/369 (6%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K+  L+I  FR++  ++ L  D  + I+ G NG GKTN+LEAI +    + F   S +D
Sbjct: 1   MKLFKLSIHGFRSHQDAVFLPHDGINLIY-GKNGTGKTNLLEAIHYTCLTKSFLSTSDSD 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                +  F          E  + + +     + + V    IN   +    ++       
Sbjct: 60  ALHFQAGHFELEAVLQSDSENESKVRVYYSPAEGKHVF---INKTPLESFSKIVGEFPCV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDS 180
            L P    +  G   ERRRFLD  +   +  +   ++ + R++  RN+LL +     F S
Sbjct: 117 ALSPYDIALTQGSPQERRRFLDASISQTNKAYLADLLSYRRVLAQRNKLLADMKHRTFSS 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                  A ++ L   I   R+  +      L +   ++   +  P +       L+   
Sbjct: 177 PELDVWTASLSALAASIIFRRIHFVRDFAQYLENAYADFQSIDETPGLTYKTELSLN--- 233

Query: 237 DQSFCALKEEYAKKL---FDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           + SF   + E AK++   F+  K D + R  TL GPHR DL     + ++   + S G+ 
Sbjct: 234 ENSFS--EAELAKQISEKFEEMKFDELRRGLTLFGPHRDDLAFSINNLSLR-KYASQGQH 290

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-QIFMTGTD 351
           K  ++ + LA    I       PI LLD++ + LD  +   L RI++   S Q F+T T+
Sbjct: 291 KTFVICLKLAQYFYICELLSEKPIFLLDDVFSELDSQRAEELVRILSSKRSGQSFITTTE 350

Query: 352 KSVFDSLNE 360
           +  F  + +
Sbjct: 351 RKDFAEVKQ 359


>gi|327312442|ref|YP_004327879.1| DNA replication and repair protein RecF [Prevotella denticola
           F0289]
 gi|326946310|gb|AEA22195.1| DNA replication and repair protein RecF [Prevotella denticola
           F0289]
          Length = 368

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 161/382 (42%), Gaps = 53/382 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N  +  L   A+   F+G NG GKTN+L+A+ +LS  +       ++V
Sbjct: 1   MQLDRLSIINYKNIQTATLNLSAKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDE 115
            R  +  F         +EG        +T +   V C          + N    R + +
Sbjct: 61  MRHDADFFV--------LEG----DYTTDTGEQEQVYCGMKRGAKKHFKRNKKEYRRLSQ 108

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174
               L + ++ P+   +  G S ERRR +D ++   D  +   +  + + ++ RN LL  
Sbjct: 109 HIGRLPLIFVSPADATLIEGGSEERRRLMDVVISQYDTPYIESLGRYNKALQQRNSLLKQ 168

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           E   D +    +E QMAE G  +   R   +  L+ +     Q  +    ++SL      
Sbjct: 169 EEEPDPTLMELLEMQMAEHGEAVYRKRAAFVQELTPVFRRIYQTISNNREQVSL------ 222

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIA 285
                      EY      G  +D + R          +L G H+ DL++      +   
Sbjct: 223 -----------EYVSHCQRGSLLDIIQRDRVKDRIMGFSLHGTHKDDLMMKLGGYPMK-R 270

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVT--DIG 342
            GS G+ K  ++ + LA    +  T G   P+LLLD+I   LD  +   + R+V+  D G
Sbjct: 271 EGSQGQNKTYVLALKLAQFDFLCRTAGGRTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFG 330

Query: 343 SQIFMTGTDKSVFDSLNETAKF 364
            QIF+T T++   D + + + F
Sbjct: 331 -QIFITDTNREHLDKILQGSGF 351


>gi|261250637|ref|ZP_05943212.1| DNA recombination and repair protein RecF [Vibrio orientalis CIP
           102891]
 gi|260939206|gb|EEX95193.1| DNA recombination and repair protein RecF [Vibrio orientalis CIP
           102891]
          Length = 360

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 158/365 (43%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V +   
Sbjct: 6   LIIKQFRNIEACDINLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNEC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  NELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSS 185
               + +     RR F+D  VF  +         F+RL + RN LL     Y + S+   
Sbjct: 121 EGFDLLTDGPKHRRSFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRELSYW-- 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + +MA L   I+  R   +  +  L  E + +E  P   + L  +     +  +    +
Sbjct: 179 -DQEMARLAENISQWRATYVEQM-KLKAEQICQEFLPEFDIQLKYYRGWDKETPY----Q 232

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  +K F+    D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 233 EILEKNFE---RDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  TD  + D  +E  + 
Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDSQIADMRDENGRM 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|15638998|ref|NP_218444.1| recF protein (recF) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025239|ref|YP_001933011.1| recombination protein RecF [Treponema pallidum subsp. pallidum
           SS14]
 gi|3322258|gb|AAC65001.1| recF protein (recF) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017814|gb|ACD70432.1| recombination protein RecF [Treponema pallidum subsp. pallidum
           SS14]
          Length = 403

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 159/351 (45%), Gaps = 30/351 (8%)

Query: 7   IKFLNIS--EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + FL ++   FRN A   +   +    FVG+NG GKTNILE +   + G  FR       
Sbjct: 47  LPFLTVTAINFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFR------- 99

Query: 65  TRIGSPSFFSTFA-----RVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           TR  S   ++T A     RV+ M  G    ++++ +++ +  + ++ N   IR   EL  
Sbjct: 100 TRTES-ELYATHARSNEYRVKVMYRGEYTHTVQIFSKNGK--KRIEKNLKKIRTKKELIS 156

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            +       +      G    RR FLD+ +   +P +   +  +  L + +NR + E   
Sbjct: 157 SIPCILFFHNDLDFVVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKEK-- 214

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFD 237
                 +++ Q+A +G  +   R +++   + +  +Y ++  +   +++    +     D
Sbjct: 215 RVQLLDALDTQIATVGFDLVQWRTQLVRDFNVIFTKYYERLGDLAQVRIE---YKPSWSD 271

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S     EE    L+  RK D     ++ GPHR D I     +A+ I   STG++++V +
Sbjct: 272 SSV----EEIVHSLYKRRKHDLAMGMSMSGPHR-DKIHFTRSQALFIPQASTGQRRLVSL 326

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            + ++ A   +  TG  P+LL+D++   LD +KR   F +      Q+F T
Sbjct: 327 VLRMSQAVFYTGVTGKLPVLLMDDVLLELDPEKRER-FMMSLPPYDQLFCT 376


>gi|269137361|ref|YP_003294061.1| recombinational DNA repair ATPase [Edwardsiella tarda EIB202]
 gi|267983021|gb|ACY82850.1| recombinational DNA repair ATPase [Edwardsiella tarda EIB202]
 gi|304557462|gb|ADM40126.1| DNA recombination and repair protein RecF [Edwardsiella tarda
           FL6-60]
          Length = 358

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 153/361 (42%), Gaps = 14/361 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LVIRDFRNIEDADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R++   G  ++++ L ++D +    ++I+      V EL + L +  + P  
Sbjct: 66  AAFV-LHGRIDDGGG-RELAVGL-SKDRQGDSKVRIDGSDGHKVAELAQMLPMQLITPEG 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  D        +  R+++ RN  L +     +     + +
Sbjct: 123 FTLLNGGPKYRRAFLDWGCFHGDRGFFTAWNNLRRVLKQRNAALRQ-VTRYAQIRPWDQE 181

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +++  R     A++  I      +  P   LS +       +  + AL E + +
Sbjct: 182 LVPLAEQVSALRAAYSEAIAQDIAATC-SQFLPEYALSFSFMRGWDRESDYAALLERHFE 240

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +       D     T +GPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 241 R-------DRALTYTALGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEYLTR 292

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAKFMRIS 368
            +G   + L+D+ ++ LD  +R  L   +   G+Q+F++  +   V D ++E  K  R+ 
Sbjct: 293 HSGRQCLYLIDDFASELDAGRRRLLAERLKATGAQVFVSAVNADQVGDMVDEKGKMFRVE 352

Query: 369 N 369
            
Sbjct: 353 Q 353


>gi|332296672|ref|YP_004438594.1| DNA replication and repair protein recF [Treponema brennaborense
           DSM 12168]
 gi|332179775|gb|AEE15463.1| DNA replication and repair protein recF [Treponema brennaborense
           DSM 12168]
          Length = 362

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 157/350 (44%), Gaps = 31/350 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+ + FRN  + ++   ++   FVG+NG GK+N+LEA+ + S    FR  +  ++ R   
Sbjct: 6   LSCTNFRNLKNDKIDLLSKEVYFVGENGQGKSNLLEALYYASYASSFRTHNEQELVRYDE 65

Query: 70  PSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            +F   T  R E  + +  +SI  E       + +Q N   I    EL   +    L   
Sbjct: 66  KAFSIRTLFREEN-DSVVSMSILFEN----GKKTIQKNAKKITDRKELVNAIPCV-LFCH 119

Query: 129 MDRIFSGLSMERRR-FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
            D  F+    ERRR F+D+ +   D  +   M  F+++++ RN +L    +D     + +
Sbjct: 120 DDLDFAVGEPERRRFFIDQSLSMYDALYIDEMRRFKKVLKSRNLVLKNQQYD--MLDAYD 177

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSFCALK 244
            Q+A+ G+ +   R +MI   + +     +K         +TG +DG    ++ S+    
Sbjct: 178 TQLAQNGLYVQYKRKKMIFTFNGIFTALYEK---------VTG-IDGVTISYEPSWKETS 227

Query: 245 ------EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                 +     L + R  D M   T+ GPHR  +      K   I   STG++++  + 
Sbjct: 228 HTVPDVDSIVDLLKNRRSADMMMGTTMSGPHRDRIRFIRGGKPF-IPTASTGQRRLASIL 286

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           +  A A   +  TG  P+LL+D++   LD DKR  +  ++     Q+F T
Sbjct: 287 LRAAQAVYYTEITGRKPVLLMDDVLLELDPDKRQKVTALLPPY-DQLFCT 335


>gi|126668220|ref|ZP_01739181.1| recombination protein F [Marinobacter sp. ELB17]
 gi|126627369|gb|EAZ98005.1| recombination protein F [Marinobacter sp. ELB17]
          Length = 411

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 161/394 (40%), Gaps = 56/394 (14%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR------------ 57
           L    FRN A+  + F     +  G NG GKT++LEAI +L  GR FR            
Sbjct: 6   LQTEHFRNLAAKPVTFSPAFNLIDGANGSGKTSLLEAIGYLGLGRSFRVSRHQAVVQHQQ 65

Query: 58  ----------------RASYADVTRIGSPS------------FFSTFARVEGMEGLADIS 89
                           R S +     G P+              ++  +     G +  +
Sbjct: 66  QRFTVFGGLDAGTLNCRGSNSGAFNSGVPNPDTGNSDARNSCIPNSELKAAPEAGASSYA 125

Query: 90  IKLETRDDRSVR--CLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147
            +L    D  ++   L+++   +R +  L +HL +  + P +  I +G   +RR+FLD  
Sbjct: 126 HRLGISRDVGLKETVLRVDGEAVRNLSALARHLPVLVIDPGVFDIVAGGPGKRRQFLDWS 185

Query: 148 VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           VF ++P         +R++  RN+ L  G  D S   + +AQ   L  ++  AR+     
Sbjct: 186 VFHVEPSFGGAWQQCQRVISQRNQTLRNGRIDESLMRAWDAQYDLLSNRVTDARLAAFAL 245

Query: 208 LSS---LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
                 L++          +KL    F  G +D +     +  ++ L   R  +     T
Sbjct: 246 FKEAFWLLLGETDAAWANQLKLE---FYPG-WDHA-----QRLSEVLVSHRDQERRMGHT 296

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
           L GP+R+D+ +    + +     S G+QK +++ + +A   ++    G     LLD+I+A
Sbjct: 297 LYGPNRADIRLKIQGRPVAEIL-SRGQQKTLVILMKIAQG-MVLRPLGKQVTFLLDDINA 354

Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
            LD   R  L   +  +  Q+F+T  ++   D+L
Sbjct: 355 ELDSRHRQMLAEKLRLLQCQVFITSIEQQTPDTL 388


>gi|52840259|ref|YP_094058.1| DNA recombination and repair protein ATPase RecF [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52627370|gb|AAU26111.1| DNA recombination and repair protein ATPase RecF [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 353

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 149/348 (42%), Gaps = 39/348 (11%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I  FRN AS  L+ +       G NG GKT++LEA+  LS    FR      +   G   
Sbjct: 8   IHNFRNIASTSLILNPNFNCITGPNGGGKTSLLEALYMLSCAHSFRSREITPIISYGQNQ 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             + FA        + IS++    D   ++   +N+       +L   L    +   + +
Sbjct: 68  -LNVFAHAYDE---STISVQKSITDGTQIK---LNNQFCCTTSQLAYALPCQVIYSDIFQ 120

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDS--SWCSSIEA 188
           I       RR  LD  +F +   + +   D++R++  RN LL +   +D    W    + 
Sbjct: 121 IIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYDHFIPW----DQ 176

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------FLDGKFDQSFCA 242
           Q+++L  +++ AR       +   +++  K  F  +   LT       +  G   ++   
Sbjct: 177 QLSQLANQLDKAR-------NDYFLQWQPK--FYQVLSDLTNISCTVEYYKGWDRKNAGQ 227

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFL 301
             EE  +K FD    D     T  GPH++DLI+    +   + H  S G+QK++L+ + L
Sbjct: 228 NMEELLQKSFDS---DRKKLYTQYGPHQADLIIS--TEQYRVKHTLSRGQQKIILIALKL 282

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           A  +L+        + L+D+++A LD+  +  L + +T    Q  +T 
Sbjct: 283 AQGQLLDKDC----LYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITN 326


>gi|295837754|ref|ZP_06824687.1| RecF protein [Streptomyces sp. SPB74]
 gi|295826659|gb|EFG64967.1| RecF protein [Streptomyces sp. SPB74]
          Length = 300

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 121/285 (42%), Gaps = 32/285 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y    +      T FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYERAEVSLGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+      F R    +      ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRAGA---ERAFVRAAVTQDERSQLVELEINPGRANRARINRSSQVRPRDVLGI-VRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARQPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHI---KLSLT 229
              D S     +  +A  G ++   R ++I AL  L+    E +     P +   + S  
Sbjct: 177 RTLDLSTLDIWDQHLARAGAELLAQRTDLIAALQPLVDKSYEQLAPGGGPALLEYRPSAP 236

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHR 270
           G   G         +EE++ +L       RK +     TL+GPHR
Sbjct: 237 GTAQG---------REEFSAQLLAALGEMRKQEIERGVTLVGPHR 272


>gi|269793362|ref|YP_003312817.1| DNA replication and repair protein RecF [Sanguibacter keddieii DSM
           10542]
 gi|269095547|gb|ACZ19983.1| DNA replication and repair protein RecF [Sanguibacter keddieii DSM
           10542]
          Length = 414

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 170/396 (42%), Gaps = 56/396 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+Y  + +  +   T  VG NG GKTN++EA+ +++     R +S A +
Sbjct: 1   MHVSHLSLLDFRSYTQVDVELEPGVTTLVGPNGQGKTNLVEALGYVATLGSHRVSSDAAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+        R   + G     +++E    R+ R  Q+N   ++   ++    R   
Sbjct: 61  IRAGA---SRAVVRTRIVRGDRASVVEIEIAQGRANRA-QLNRSPVQRPRDVLGIARTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEG 176
             P    +  G    RRRFLD +   + PR      D+ER++R R+ LL        +  
Sbjct: 117 FAPEDLVLVKGDPDARRRFLDDLTVLLLPRMAGVFSDYERVLRQRSALLKSAGAARRSSN 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINAL-SSLIMEYVQ-KENFPHIKL----SLTG 230
             D       +A++A++G +I   R++++ AL   + + Y Q      H ++    SL  
Sbjct: 177 PPDLRTLDVWDAKLAQVGAQIVAVRLQLVAALRPHVAVAYDQVSSGQGHAEIAYRSSLDA 236

Query: 231 FLDGKFDQSFCALKEE-----------YAKKLFDGRKMDSMSR---------RTLIGPHR 270
            L G  D+S   L  E            + +  + R +++++            L+GPHR
Sbjct: 237 VLSGVDDRSISGLAAEPVPAPDAGAGAPSSEHLEARLLEALAAVRPKELERGVCLVGPHR 296

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN----TTGFA------------ 314
            DL +          + S GE     + + LA  RL+++    +T  A            
Sbjct: 297 DDLTLTLGGLPAK-GYASHGESWSFALALRLASYRLLTDGPDPSTAEAAFWFADTGPDTE 355

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           PIL+LD++ A LD  +R  L  +V    SQ+ +T  
Sbjct: 356 PILVLDDVFAELDSRRRGRLAELVAG-ASQVLITAA 390


>gi|297564536|ref|YP_003683508.1| DNA replication and repair protein RecF [Meiothermus silvanus DSM
           9946]
 gi|296848985|gb|ADH62000.1| DNA replication and repair protein RecF [Meiothermus silvanus DSM
           9946]
          Length = 347

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 142/342 (41%), Gaps = 26/342 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L  + FRN  S         T  VG N  GK+N+LEAI +L+ G G  +   +D    G 
Sbjct: 6   LRQTHFRNLKSPEFAPAPGLTTVVGGNAQGKSNLLEAI-YLALG-GELKNGLSDRIAFGQ 63

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVDELNKHLRISWLVP 127
              +  +A VE   GL+ +  KL      +   R L +N+     + E  +      L P
Sbjct: 64  TEAW-VYAEVETQFGLSRLENKLSLPRPGTPGGRELWLNETSA-SLKEFAQLPGAVLLGP 121

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
               +  G    RRRFLD ++     R+R  +  + R ++ RN LL  G       +   
Sbjct: 122 DDLDLVLGPPEGRRRFLDLLLSRFSARYRAVLSAYSRALQQRNALLKMG---GKGLAVWN 178

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFP---HIKLSLTGFLDGKFDQSFCALK 244
           A++A+ G +I   R  M+  LS L  E   +E  P   H++L  T   D           
Sbjct: 179 AELAKYGTEILSLRRRMLGKLSPLARESY-RELAPGELHLELVETTPPD----------- 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            E+   L D  + D     T IGPHR DL +   D    +   S GE + + + + L   
Sbjct: 227 -EFLPALEDTVQQDLERGATSIGPHRDDLAM-RLDGRDALKFASRGEARSIALALRLGEH 284

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           RL+      AP+LL+DE    LD  +R AL      +   I 
Sbjct: 285 RLLWQHYDEAPLLLVDEWHTELDPRRRGALLSYAQSLPQAIL 326


>gi|285016824|ref|YP_003374535.1| DNA replication and repair protein RecF [Xanthomonas albilineans
           GPE PC73]
 gi|283472042|emb|CBA14549.1| probable dna replication and repair protein recf [Xanthomonas
           albilineans]
          Length = 366

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 156/365 (42%), Gaps = 25/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+    R + S+ L       +  GDNG GKT ILEA+  ++ GR FR      + R G 
Sbjct: 6   LDFHHLRRFPSIELTPAPGMNLITGDNGAGKTTILEAMHLMAYGRSFRCRVRDGLIRQGQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV-------VDELNKHLRI 122
            +    F  VE  E  AD     +TR  R+       D   R+       +  L   L +
Sbjct: 66  -AGLDVF--VEWHEQAADTG---QTRRRRAGLQHSGQDWRGRLDGQDVPYLGTLCAALAV 119

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
               P    + SG    RRRF+D  +F ++P        + R ++ RN LL  G   ++ 
Sbjct: 120 VTFEPGSHVLVSGGGEARRRFVDWGLFHVEPDFLSLWRRYARALKQRNALLKSGGAGAA- 178

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             + + ++AE G  +   R   ++ L   ++        P +  +L G    +F   +  
Sbjct: 179 LDAWDHELAEAGEPLTSRRQHYLDRLLRRLLILA-----PELAPAL-GIEQLQFSPGWRR 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFL 301
            +   A  L   R  D     T +GPHR+D  + +   AI      S G+ K+  +   L
Sbjct: 233 HEISLADALLLNRDRDRQLGYTTVGPHRADWSLSFA--AIPGRDALSRGQAKLTALACLL 290

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLN 359
           A A   +   G  P++ LD++++ LD+  +  + + +    +Q+F+T T+  +++ D+  
Sbjct: 291 AQAEDYAEQRGEWPVIALDDLASELDQHHQARVLQRLRAGPAQVFLTATETPQALSDAGL 350

Query: 360 ETAKF 364
             A+F
Sbjct: 351 PIARF 355


>gi|257455166|ref|ZP_05620404.1| DNA replication and repair protein RecF [Enhydrobacter aerosaccus
           SK60]
 gi|257447499|gb|EEV22504.1| DNA replication and repair protein RecF [Enhydrobacter aerosaccus
           SK60]
          Length = 390

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 171/377 (45%), Gaps = 38/377 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L I  FRN  ++ L   +   +F+G NG GKT++LE+I  LS G+ FR       
Sbjct: 1   MQIIQLAIHHFRNLHTIELQ-PSSCNVFLGQNGSGKTSLLESIYLLSRGKSFRHHQPRHY 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  S  + FAR+   + +A     +    D + + L++N   +     L + L    
Sbjct: 60  IEHGF-SDTTVFARLNHGQTVA-----IAKSQDATTQ-LRLNGQSLVTQSPLAQLLPTLL 112

Query: 125 LVP-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           L P S+ ++  G S  RR  LD + F ++       + ++RL++ RN LL +   + S  
Sbjct: 113 LEPVSLAQLEDG-SQARREMLDWLGFHVEQSFHPNWLAYQRLLKQRNSLLKQNVGNVSLT 171

Query: 184 -------SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                  S+ + Q+++   KI+ AR ++I       +  VQK   P     L       F
Sbjct: 172 SLQQHELSAWDYQLSQHAEKIHQARADIIEQWQPHFLAQVQK-FLPQYAEKLRLRYTPGF 230

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG--------- 287
           D +   L    A +L    ++      T +G HRSD+ V   D   T A G         
Sbjct: 231 D-TEAGLAITLANRLASDIELG----YTRMGCHRSDINV-VLDLVHTDAAGHKHKQTLLA 284

Query: 288 ----STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
               S GE+K++++ + L+   L+ N     P++L+D+I+A LD D    L   +  + S
Sbjct: 285 TDMLSRGEKKLLVMALRLSQLPLL-NQVDKVPLVLVDDITAELDNDALMLLLTGLKQVNS 343

Query: 344 QIFMTGTDKSVFDSLNE 360
           Q+F+T   + + +S+ +
Sbjct: 344 QLFITSLTQDIVESIQK 360


>gi|229816999|ref|ZP_04447281.1| hypothetical protein BIFANG_02254 [Bifidobacterium angulatum DSM
           20098]
 gi|229785744|gb|EEP21858.1| hypothetical protein BIFANG_02254 [Bifidobacterium angulatum DSM
           20098]
          Length = 384

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 155/372 (41%), Gaps = 50/372 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  FR++  + + F     +  G NG+GKTN++EA+  LS G             
Sbjct: 3   ISRLALDHFRSWNQVVVDFTPGVNVLYGANGLGKTNLVEAVEVLSTG------------- 49

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRS--VRCLQINDVVIRVVDELNKHLR-IS 123
            GS    S+   VE   G A I +   T +  +  V          RV    +++LR + 
Sbjct: 50  -GSHRVNSSLPLVERGYGKATIRVNANTAETTTYEVTIAARGANRARVNSGPSQYLRDVV 108

Query: 124 WLVPSM------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--- 174
            LVPS+       R+ S     RR FL++    + P +  R+  F ++ R R  LL    
Sbjct: 109 GLVPSVSFTPEDQRLISADPATRRGFLNQSAGMLIPGYTGRLQRFTQIARQRAALLKQLG 168

Query: 175 --EGYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
             EG  D+  S       Q  E GV +   R E++  L++   +   +    H K  +  
Sbjct: 169 QHEGSADAVLSGLEVWTGQFIEAGVALTRMRNEVMGILATPFSDIYARLASGHGKAEIV- 227

Query: 231 FLDGKFDQSFCALKE---------EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
                ++ SF  +++         E+ ++L+ G     M+   LIGP R D  V   D  
Sbjct: 228 -----YEPSFVEVRDCDTPELNISEHFQRLYPGEVSRGMN---LIGPQRDDFSV-LLDGE 278

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
                 S GE   + + + +A    I+ + G  PI++LD++ A LDE +R+ +     D 
Sbjct: 279 PARDFASNGEMWTMALSLKMALFEAIAESRGIRPIVILDDVFAQLDESRRHQILDFAND- 337

Query: 342 GSQIFMTGTDKS 353
             Q+ +T    S
Sbjct: 338 QDQVLVTAAAAS 349


>gi|54295986|ref|YP_122355.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str.
           Paris]
 gi|53749771|emb|CAH11151.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str.
           Paris]
          Length = 353

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 148/349 (42%), Gaps = 41/349 (11%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I  FRN AS  L+ +       G NG GKT++LEA+  LS    FR    A +   G   
Sbjct: 8   IHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVAPIISYGQNQ 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             + FA        + IS++    D   ++   +N+       +L   L    +   + +
Sbjct: 68  -LNVFAHAYDE---STISVQKSITDGTQIK---LNNQFCCTTSQLAYALPCQVIYSDIFQ 120

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIE 187
           I       RR  LD  +F +   + +   D++R++  RN LL    T  +F   W    +
Sbjct: 121 IIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHF-IPW----D 175

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------FLDGKFDQSFC 241
            Q+++L  +++ AR +           +  +  F  +   LT       +  G   ++  
Sbjct: 176 QQLSQLANQLDKARNDYF---------FQWQPKFYQVLSDLTNISCTVEYYKGWDRKNAG 226

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIF 300
              EE  +K FD    D     T  GPH++DLI+    +   + H  S G+QK++L+ + 
Sbjct: 227 QNIEELLQKSFDS---DRNKLYTQYGPHQADLIISI--EQYRVKHTLSRGQQKIILIALK 281

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           LA  +L+        + L+D+++A LD+  +  L + +T    Q  +T 
Sbjct: 282 LAQGQLLDKDC----LYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITN 326


>gi|301161961|emb|CBW21505.1| putative DNA replication and repair protein [Bacteroides fragilis
           638R]
          Length = 370

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 22/358 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +   R
Sbjct: 3   LKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                FF      E M+G   +I   ++ R  +  +  +      +    L+ H+    L
Sbjct: 63  -HEQDFFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKRNK------KEYSRLSDHIGFIPL 115

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
           V   P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +  
Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPIEEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  MA+ G  +   R   I+    +   +    +    ++ LT     +      
Sbjct: 176 LFLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHARNASLLE 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            L+E         R  D +   +L G H+ +L +   D  I    GS G+ K  LV + L
Sbjct: 236 VLQE--------SRVRDKIMGYSLRGIHKDELNMLLGDFPIK-REGSQGQNKTYLVALKL 286

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358
           A    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +
Sbjct: 287 AQFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRI 344


>gi|307565627|ref|ZP_07628105.1| DNA replication and repair protein RecF [Prevotella amnii CRIS
           21A-A]
 gi|307345659|gb|EFN91018.1| DNA replication and repair protein RecF [Prevotella amnii CRIS
           21A-A]
          Length = 368

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 158/371 (42%), Gaps = 41/371 (11%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  ++N  +  L    +   F+G NG GKTN+L+AI +LS  +       ++V + G 
Sbjct: 6   LSIINYKNIQTATLELSPKLNCFIGHNGEGKTNLLDAIYYLSFCKSAFNPKDSEVIQHG- 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDELNKHL 120
               + F  +EG       +   E  D   V C          + N    +    L++H+
Sbjct: 65  ----TNFFVIEG-------NYTNEHGDKEQVYCGMKRGQKKHFKRNK---KEYKRLSQHI 110

Query: 121 RISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
            +  LV   P+   +  G S ERR+ +D ++   D  +   +  + + ++ RN LL +  
Sbjct: 111 GLVPLVFISPADSSLIEGGSEERRKLMDVVISQYDAAYIEALTRYNKALQQRNSLLKQEE 170

Query: 178 FDSSWCSSIEA-QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                   +   QMAE G  +   R   +  L  +     +  +  H K+SLT    G+ 
Sbjct: 171 GLDETLLELLEMQMAEYGEYVFKKRTVFVEELQPIFQNIYKCISNDHEKVSLTYMSHGQR 230

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 ++        + R  D +   +L G H+ DL++   D  I   +GS G+ K  +
Sbjct: 231 GNLLDIIR--------NSRDKDKIMGYSLHGVHKDDLVMLLGDYPIK-RYGSQGQNKTYV 281

Query: 297 VGIFLAHARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTGTDKS 353
           + + LA    +  T     P+LLLD+I   LD ++   +  +V+  D G QIF+T T++ 
Sbjct: 282 LSLKLAQFDFLCRTALHNTPLLLLDDIFDKLDSNRVKQIINLVSGDDFG-QIFITDTNRE 340

Query: 354 VFDSLNETAKF 364
             D +     F
Sbjct: 341 HLDKILHGGDF 351


>gi|304390483|ref|ZP_07372436.1| recombination protein F [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304326239|gb|EFL93484.1| recombination protein F [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 413

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 166/391 (42%), Gaps = 38/391 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT--RI 67
           L +  FR+Y  + L F A   +FVG NG GKTN+LEA+++L+     R  + A +    I
Sbjct: 6   LALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGLIFREI 65

Query: 68  G----SPSFFSTF---ARVEGMEGLADIS-----IKLETRDDRSVRCLQINDVVIRVVDE 115
           G    SP+        ARV     L D       +++E    R+ R + IN   +R    
Sbjct: 66  GDTVRSPATLRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNVRPRSL 124

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L  HL      P   ++  G    RR FLDR+   + P     + ++ ++ R R   L +
Sbjct: 125 LG-HLSTVLFAPEDLQLVQGDPATRRTFLDRIAIQLRPTLVGALGEYTKIARQRGAYLKD 183

Query: 176 -----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFP-HIKLSL 228
                   D    S  +  +    V++   R  +I+ L+  +   Y +    P  + L+ 
Sbjct: 184 VAKRRAPIDEIQLSIWDDALVPAAVEVMRERARVIDQLAQFLPSVYARIAGHPAPVGLTY 243

Query: 229 TGFLDGKFDQSFCALKEEYA---------KKLFDGRKMDSMSRR-TLIGPHRSDLIVDYC 278
              +    + S    +E YA         ++    R  D   R   L+GPHR +L + + 
Sbjct: 244 ADSVTKTLELSADEQREMYANPELLSSVFRQALAQRHADEARRGVNLVGPHRDELEL-HL 302

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           +        S GE     + + LA   L+       P+LLLD++ A LDE +R AL   +
Sbjct: 303 NGLPVKGFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAALLWAI 362

Query: 339 TDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368
            D   Q+F+T  T   + ++L+  A F R++
Sbjct: 363 -DQADQVFITSATGTEIPEALH--AAFYRVT 390


>gi|111219509|ref|YP_710303.1| recombination protein F [Frankia alni ACN14a]
 gi|122954749|sp|Q0RUP6|RECF_FRAAA RecName: Full=DNA replication and repair protein recF
 gi|111147041|emb|CAJ58688.1| DNA replication and repair protein recF [Frankia alni ACN14a]
          Length = 378

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 151/360 (41%), Gaps = 21/360 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+Y SL L         VG NG GKTN++EAI +++     R ++ A +
Sbjct: 1   MHLTHLSLVDFRSYPSLDLTLGPGVVTLVGRNGQGKTNLIEAIGYVATLASHRVSADAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ S     AR+  + G     ++LE    R+ R       V R  D L   L    
Sbjct: 61  VRQGA-SHAVVRARI--VRGDRAALVELEIVPGRANRARLNRAPVPRPRDVLGL-LCTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEG 176
             P    +  G    RR+FLD ++ A  PR    + D++R+++ R+ LL          G
Sbjct: 117 FAPEDLALVKGDPAGRRQFLDELLVARTPRMAAVLADYDRVLKQRSTLLRTAGAARRAGG 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP------HIKLSLTG 230
             D       +  +A  G ++  AR+ ++ AL   +                  + S+  
Sbjct: 177 KGDLRTLDVWDGYLASYGAELLTARLALVEALRPGVAGAYAAVAGAQAAVGFEYRASVPQ 236

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                        +E    +L   R  +    +TL+GPHR DL++   D      + S G
Sbjct: 237 PAPDPVRPDRERWEEAIRAELVAARPREIERGQTLVGPHRDDLLL-TVDGLPARGYASHG 295

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           E   + + + LA   L+       P+LLLD++ A LD  +R+ L  +V     Q+ +T  
Sbjct: 296 ESWSLALALRLASFELL-RADDREPVLLLDDVFAELDVQRRSRLAELVAP-AEQVLVTAA 353


>gi|281424150|ref|ZP_06255063.1| RecF protein [Prevotella oris F0302]
 gi|281401711|gb|EFB32542.1| RecF protein [Prevotella oris F0302]
          Length = 366

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 154/366 (42%), Gaps = 32/366 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR--- 66
           L+I  ++N     +    +   F+G NGVGKTN+L+A+ +LS    F R+++  +     
Sbjct: 6   LSILNYKNIREATISLSPKLNCFIGSNGVGKTNVLDAVHYLS----FCRSAFNPIDSQVI 61

Query: 67  IGSPSFF---STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + +  F      +   EG E      +K  T+     +  + N    R    L++H+ + 
Sbjct: 62  MHNQDFLVLEGNYTTDEGEEEQIYCGMKRGTK-----KHFKRNKKEYR---RLSQHIGLI 113

Query: 124 WLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFD 179
            LV   PS   +  G S ERRR LD ++   D  +   +  + + ++ RN LL  E   D
Sbjct: 114 PLVFASPSDSVLIEGGSEERRRLLDLVISQYDHAYIEALSAYNKALQQRNALLKMEDEPD 173

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +     E QMA  G  I   R   +  L  +        +  H  +SL     G+    
Sbjct: 174 KALLEIWEEQMAMNGEVIYQKRDAFVKRLVPVFQNIYSHISGDHETVSLNYISHGQRGSL 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++ +        R  D     +L G HR DL +   D       GS G+ K   + +
Sbjct: 234 LDTIQRD--------RYKDRAVGYSLHGVHRDDLEM-LLDGYQMKREGSQGQHKTYALAL 284

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358
            LA    + +T+   P+LLLD+I   LD D+   + ++V   G  QIF+T T++   D +
Sbjct: 285 KLAQFDFLRHTSNSTPLLLLDDIFDKLDADRVEQIVQLVGGEGFGQIFITDTNRDHLDRI 344

Query: 359 NETAKF 364
                F
Sbjct: 345 LANGDF 350


>gi|172037526|ref|YP_001804027.1| recombination protein F [Cyanothece sp. ATCC 51142]
 gi|254790472|sp|B1WT39|RECF_CYAA5 RecName: Full=DNA replication and repair protein recF
 gi|171698980|gb|ACB51961.1| DNA repair and genetic recombination protein [Cyanothece sp. ATCC
           51142]
          Length = 380

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 185/394 (46%), Gaps = 57/394 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++  FRNY    L   +Q TI +G+N  GK+N+LEA+  L+  +  R     D+  
Sbjct: 3   LKHIHLYGFRNYHEQTLDLQSQKTILLGNNAQGKSNLLEAVELLATLKSHRTNRDRDLIL 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  +     A VE   G +++ I   +   RS   L +N       + L +HL     +
Sbjct: 63  EGKKT-GQILAMVERTYGESELGITFRSPGRRS---LMLNH------ENLRRHLDFLGHI 112

Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----- 173
            +++  FS L ++        RR +LD ++  ++P +   +  + +++R RN LL     
Sbjct: 113 NAVE--FSCLDLDLVRGSPETRRSWLDTLLIQLEPVYASIIHQYYKILRQRNALLKVIRK 170

Query: 174 -TEGYFDSSWCSS-------IEAQMAELGVKINIARVEMINALSSLIMEYVQK------- 218
             E   +SS  S+        + Q+AE G ++   R  +I  ++ L  ++ Q+       
Sbjct: 171 TVEEQENSSNLSAELSQLKVWDQQLAEAGTRVTRRRYRVIERITPLAQKWHQEISSGTEI 230

Query: 219 ---ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
                 P+IK+          ++    +++ +  K+   R  +     T++GPHR D+  
Sbjct: 231 LAINYLPNIKIE---------NEDPQQVQQAFLDKIEQRRMAEQQLATTVVGPHRDDVEF 281

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
           +  +     ++GS G+Q+ +++ I LA  +LI    G  P+LLLD++ A LD +++N L 
Sbjct: 282 N-INHTPAKSYGSQGQQRTLVLAIKLAELQLIEEVIGEPPLLLLDDVLAELDPNRQNQLL 340

Query: 336 RIVTDIGSQIFMTGTDKSVFDS--LNETAKFMRI 367
            ++     Q  +T T    FD+  LN +++ M++
Sbjct: 341 EVIQG-RFQTLITTTYLHSFDAQWLN-SSQIMKV 372


>gi|298208521|ref|YP_003716700.1| putative DNA replication and repair protein [Croceibacter
           atlanticus HTCC2559]
 gi|83848444|gb|EAP86313.1| putative DNA replication and repair protein [Croceibacter
           atlanticus HTCC2559]
          Length = 359

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 154/354 (43%), Gaps = 28/354 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N+ S    FD++    VG NG+GKTN+L++I  LS G+     SY +   
Sbjct: 3   LKQLSLINYKNFESETFEFDSKINCLVGANGIGKTNVLDSIYHLSLGK-----SYFNPIT 57

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISWL 125
             +      F  ++G     D + K+     R   + ++ N        E    L +  +
Sbjct: 58  SQNIKHHEDFFVIDGEFVKQDRTEKIVVSAKRGQKKVIKRNSKAYERFSEHVGLLPVVII 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSS 181
            P+   + +  S  RR+F+D ++   D  +   +I + +++  RN LL        F+SS
Sbjct: 118 SPADRDLITEGSDTRRKFMDGIISQNDKTYLDNLISYNKVLAQRNALLKYFAANRTFESS 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQS 239
                  Q++    +I   R   + +   +  E  Q    N   + +S            
Sbjct: 178 TLEVYNEQLSNYASEIFETRTLFLESFIPIFKERYQTISNNKEQVTISYK---------- 227

Query: 240 FCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
              LK+     LF+ R    + R+ T +G H+ DL     +  I    GS G+QK  L+ 
Sbjct: 228 -SQLKKGNLASLFEERLQKDLQRQYTTVGTHKDDLDFGIENHPIK-RFGSQGQQKSFLIA 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTGT 350
           + LA    I   +   PILLLD++   LDE +   +  +V+  ++G Q+F++ T
Sbjct: 286 LKLAQYDFIKAKSKVNPILLLDDVFDKLDEQRVEQIVSLVSTGELG-QLFISDT 338


>gi|312174327|emb|CBX82580.1| DNA replication and repair protein recF [Erwinia amylovora ATCC
           BAA-2158]
          Length = 361

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 149/361 (41%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEDADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDR 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R+   E    + +      D  VR   I+      V EL + L +  + P  
Sbjct: 66  DAFV-LHGRIAATEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR ++D   F  +P       +  RL++ RN  L +         + + +
Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHNEPGFFNAWSNLRRLLKQRNAALRQ-VSRYQQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +A L  +I+  R     A+++ I      +  P  +LS + F  G +D+        YA+
Sbjct: 181 LAPLAEQISQWRAAYSEAIAADINATC-AQFLPEFQLSFS-FQRG-WDKD-----SGYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++D  +      +     S G+ K+++  + LA    ++ 
Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
             G   + L+D+ ++ LDE +R  L   +    +Q+F++    + VFD  +E  K   + 
Sbjct: 292 QNGRRCLYLIDDFASELDETRRQLLAAHLKATQAQVFVSAIAAEHVFDMADEKGKMFHVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|292490134|ref|YP_003533029.1| DNA replication and repair protein RecF [Erwinia amylovora
           CFBP1430]
 gi|292901138|ref|YP_003540507.1| DNA replication and repair protein [Erwinia amylovora ATCC 49946]
 gi|291200986|emb|CBJ48125.1| DNA replication and repair protein [Erwinia amylovora ATCC 49946]
 gi|291555576|emb|CBA24169.1| DNA replication and repair protein recF [Erwinia amylovora
           CFBP1430]
          Length = 361

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 149/361 (41%), Gaps = 15/361 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIEDADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDR 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F     R+   E    + +      D  VR   I+      V EL + L +  + P  
Sbjct: 66  DAFV-LHGRIAATEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR ++D   F  +P       +  RL++ RN  L +         + + +
Sbjct: 122 FTLLNGGPKYRRAYIDWGCFHNEPGFFNAWSNLRRLLKQRNAALRQ-VSRYQQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +A L  +I+  R     A+++ I      +  P  +LS + F  G +D+        YA+
Sbjct: 181 LAPLAEQISQWRAAYSEAIAADINATC-AQFLPEFQLSFS-FQRG-WDKD-----SGYAE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T  GPH++D  +      +     S G+ K+++  + LA    ++ 
Sbjct: 233 LLERNFERDRALTYTASGPHKADFRIRAEGTPVEDLL-SRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
             G   + L+D+ ++ LDE +R  L   +    +Q+F++    + VFD  +E  K   + 
Sbjct: 292 QNGRRCLYLIDDFASELDETRRQLLAAHLKATQAQVFVSAIAAEHVFDMADEKGKMFHVE 351

Query: 369 N 369
            
Sbjct: 352 Q 352


>gi|291059423|gb|ADD72158.1| DNA replication and repair protein RecF [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 357

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 159/351 (45%), Gaps = 30/351 (8%)

Query: 7   IKFLNIS--EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + FL ++   FRN A   +   +    FVG+NG GKTNILE +   + G  FR       
Sbjct: 1   MPFLTVTAINFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFR------- 53

Query: 65  TRIGSPSFFSTFA-----RVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           TR  S   ++T A     RV+ M  G    ++++ +++ +  + ++ N   IR   EL  
Sbjct: 54  TRTES-ELYATHARSNEYRVKVMYRGEYTHTVQIFSKNGK--KRIEKNLKKIRTKKELIS 110

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            +       +      G    RR FLD+ +   +P +   +  +  L + +NR + E   
Sbjct: 111 SIPCILFFHNDLDFVVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKEK-- 168

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFD 237
                 +++ Q+A +G  +   R +++   + +  +Y ++  +   +++    +     D
Sbjct: 169 RVQLLDALDTQIATVGFDLVQWRTQLVRDFNVIFTKYYERLGDLAQVRIE---YKPSWSD 225

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S     EE    L+  RK D     ++ GPHR D I     +A+ I   STG++++V +
Sbjct: 226 SSV----EEIVHSLYKRRKHDLAMGMSMSGPHR-DKIHFTRSQALFIPQASTGQRRLVSL 280

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            + ++ A   +  TG  P+LL+D++   LD +KR   F +      Q+F T
Sbjct: 281 VLRMSQAVFYTGVTGKLPVLLMDDVLLELDPEKRER-FMMSLPPYDQLFCT 330


>gi|320334765|ref|YP_004171476.1| DNA replication and repair protein recF [Deinococcus maricopensis
           DSM 21211]
 gi|319756054|gb|ADV67811.1| DNA replication and repair protein recF [Deinococcus maricopensis
           DSM 21211]
          Length = 368

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 158/388 (40%), Gaps = 56/388 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG----------- 53
           + ++ L    +RN +   L      T   G+NG GKTN+LEA      G           
Sbjct: 12  VHLRALTTLHYRNLSPATLDLPRGITSIWGENGAGKTNLLEAAYLALTGLTNAPRVEQLV 71

Query: 54  -RGFRRASY-ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
            RG R     AD+   GS S            GLA           R  R ++++ V  R
Sbjct: 72  TRGEREGYVRADLHSGGSTSILEV--------GLA-----------RGRRHVKVDGVRAR 112

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
             D L +   + W+ P    +  G    RR +LD ++  +  R+  ++  FER +  RN 
Sbjct: 113 SSD-LPRGSAV-WIRPEDSDLVYGSPSARRAYLDALLSRLSVRYAHQLSRFERTLTQRNA 170

Query: 172 LLTEGYFDSSWCSSI-EAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLT 229
            L  G    +W   + +  +  LG ++   R  ++  L+ L    + Q      + L+LT
Sbjct: 171 ALKSG---ETWAMDVWDDALVTLGSELMTMRRRVLVRLAELTQAAHTQLGGHKPLTLALT 227

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGS 288
                          E Y   L   R+ + ++R +T+IGPHR DL +   D        S
Sbjct: 228 ----------ESTTPETYLADLA-ARRAEELARGQTVIGPHRDDLALT-LDLFPAADFAS 275

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE + V + +  A   L+    G  P+LL+D+ +A LD ++R  L  +   +  Q  +T
Sbjct: 276 RGEARTVALALRKAELDLLRERYGENPVLLIDDFTAELDPNRRQFLLDLAHSV-PQALVT 334

Query: 349 GTDKSVFDSLN---ETAKFMRISNHQAL 373
           GT+ +    L    E+  FM  +  Q L
Sbjct: 335 GTEHAPGARLTLRAESGTFMPDAAQQPL 362


>gi|113460284|ref|YP_718343.1| recombination protein F [Haemophilus somnus 129PT]
 gi|123327073|sp|Q0I0Y5|RECF_HAES1 RecName: Full=DNA replication and repair protein recF
 gi|112822327|gb|ABI24416.1| DNA replication and repair protein RecF [Haemophilus somnus 129PT]
          Length = 358

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 155/357 (43%), Gaps = 38/357 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I+ FRN  ++ L F+      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLIINHFRNLTAIDLEFERGFNFIIGNNGSGKTSLLEAIFYLGHGRSFKSAVANRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P F     +++  +    + ++ + + +     ++IN    + + +L   L +  
Sbjct: 61  ISYQQPHFI-LHGKIQEQQHQWSVGLQKQRQGN---TLMKINGEDAKKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR +LD  +F  +           RL++ RN  L +       CS
Sbjct: 117 ITPEGLTLLNGGPSYRRAYLDWGLFHHNASFYNAWSSLNRLLKQRNSALQQV------CS 170

Query: 185 S-----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                  + ++ +L  +++  R     AL S I +  Q    P +++S++ F  G +D++
Sbjct: 171 YEKLKIWDRELTKLAYQVSYWREAYAEALRSEIEKTCQL-FLPELEISVS-FHQG-WDKN 227

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-------STGEQ 292
                 +YA  L    + D     T  GP ++D            A+G       S G+ 
Sbjct: 228 M-----DYADLLQQNFERDRALGYTFSGPQKADFRFK--------ANGLPVEDILSRGQL 274

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           K+++  + LA    +        I LLD+ ++ LD+ KR  L   +   GSQ+F+T 
Sbjct: 275 KLLMCALRLAQGEHLMQQKKRHCIFLLDDFASELDQYKRTLLAERLQKNGSQVFVTA 331


>gi|170718431|ref|YP_001783358.1| recombination protein F [Haemophilus somnus 2336]
 gi|189039626|sp|B0UUM0|RECF_HAES2 RecName: Full=DNA replication and repair protein recF
 gi|168826560|gb|ACA31931.1| DNA replication and repair protein RecF [Haemophilus somnus 2336]
          Length = 358

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 155/357 (43%), Gaps = 38/357 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I+ FRN  ++ L F+      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLIINHFRNLTAIDLEFERGFNFIIGNNGSGKTSLLEAIFYLGHGRSFKSAVANRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P F     +++  +    + ++ + + +     ++IN    + + +L   L +  
Sbjct: 61  ISYQQPHFI-LHGKIQEQQHQWSVGLQKQRQGN---TLMKINGEDAKKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR +LD  +F  +           RL++ RN  L +       CS
Sbjct: 117 ITPEGLTLLNGGPSYRRAYLDWGLFHHNASFYNAWSSLNRLLKQRNSALQQV------CS 170

Query: 185 S-----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                  + ++ +L  +++  R     AL S I +  Q    P +++S++ F  G +D++
Sbjct: 171 YEKLKIWDRELTKLAYQVSYWREAYAEALRSEIEKTCQL-FLPELEISVS-FHQG-WDKN 227

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-------STGEQ 292
                 +YA  L    + D     T  GP ++D            A+G       S G+ 
Sbjct: 228 M-----DYADLLQQNFERDRALGYTFSGPQKADFRFK--------ANGLPVEDILSRGQL 274

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           K+++  + LA    +        I LLD+ ++ LD+ KR  L   +   GSQ+F+T 
Sbjct: 275 KLLMCALRLAQGEHLMQQKKRHCIFLLDDFASELDQYKRTLLAERLQKNGSQVFVTA 331


>gi|261346740|ref|ZP_05974384.1| DNA replication and repair protein RecF [Providencia rustigianii
           DSM 4541]
 gi|282565140|gb|EFB70675.1| DNA replication and repair protein RecF [Providencia rustigianii
           DSM 4541]
          Length = 364

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 153/366 (41%), Gaps = 22/366 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         +G NG GKT+ILEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIEDADLSLATGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQANRVIRHDQ 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
             F        ++       + +      D  VR   I+      + EL K L +  + P
Sbjct: 66  EQFILHGKLGHLDSDRKALSLGLSKNREGDSKVR---IDGTDGHKIAELAKLLPMQLITP 122

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCS 184
               + +G    RR F+D   F  +        D +RL++ RN   R +T       W  
Sbjct: 123 EGFTLLNGGPKYRRAFIDWGCFHNEALFFSTWSDLKRLLKQRNAALRQVTRYEQIRHW-- 180

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+A +  +I+  R E I  ++  I +  Q +  P   LS++ F  G +D+      
Sbjct: 181 --DQQLAPISEQISQWRGEYIAGIAENIEQTCQ-QFLPEFSLSVS-FQRG-WDKEI---- 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y+++L    + D     T  GPH++DL +   D        S G+ K+++  + LA  
Sbjct: 232 -DYSEQLERQFERDRALTYTSSGPHKADLRI-RADGIPVEDMLSRGQLKLLMCALRLAQG 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  T   V D ++  +K
Sbjct: 290 EYLTQQSGQRCLYLLDDFASELDSGRRQLLATRLKATQAQVFVSAITPAQVNDMIDANSK 349

Query: 364 FMRISN 369
              +  
Sbjct: 350 MFSVEQ 355


>gi|119025021|ref|YP_908866.1| recombination protein RecF [Bifidobacterium adolescentis ATCC
           15703]
 gi|254790464|sp|A0ZZA1|RECF_BIFAA RecName: Full=DNA replication and repair protein recF
 gi|118764605|dbj|BAF38784.1| recombination protein RecF [Bifidobacterium adolescentis ATCC
           15703]
          Length = 403

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 144/360 (40%), Gaps = 51/360 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R++    L F+    I  G NG+GKTNI+EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWDHCVLDFEPGINILQGSNGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G PS  +  A VE         I +  R     R        +R +        + W
Sbjct: 61  VEKGHPS-ATVRANVEDAGEQRTYEITIAARGANRARVDGGKSQYMRDI--------VGW 111

Query: 125 L-----VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---- 175
           +      P   R+ SG    RR FL++    + PR+ + +  F  + + R  LL +    
Sbjct: 112 VPSVSFTPEDQRLVSGDPATRRNFLNQAASLLLPRYAQSLQQFTHVAKQRAALLKQLSDG 171

Query: 176 -----GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                 Y   +  S +E    Q   LGV++   R ++I  L         +E F  I  S
Sbjct: 172 SGIDPEYGRQAVLSGLEVWTGQFIALGVQLTKDRNDVIGLL---------REPFTRIYAS 222

Query: 228 LTG-------FLDGKFDQSF-----CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
           L G         +  FD+        A    + ++++ G   +    + LIGP R DL +
Sbjct: 223 LAGEEEQADLVYEPSFDEVLLFDEPAAEISRHFQRIYPG---EVARGQNLIGPQRDDLTL 279

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
              D        S GE   + + + +A   ++S      PI++LD++ A LDE +R  + 
Sbjct: 280 RLNDMPAR-EFASNGEMWTMALALKMALYEVVSAQRDVKPIVILDDVFAQLDESRRGQIL 338


>gi|330718065|ref|ZP_08312665.1| DNA replication and repair protein RecF [Leuconostoc fallax KCTC
           3537]
          Length = 343

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 148/350 (42%), Gaps = 45/350 (12%)

Query: 33  VGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKL 92
           +G+N  GKTN+LE+I  L+  R  R ++  D+ +       +   RV    G   +S+  
Sbjct: 1   MGENAQGKTNLLESIYVLALARSHRTSNDKDLIQWQQKET-TISGRVHRRTGDLPLSLNF 59

Query: 93  ETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152
             +  ++    ++N +    + +    L +    P    +  G    RRRF+D     ++
Sbjct: 60  SNKGKKA----RVNHLEQSKLSQYVGQLNVILFAPEDLELVKGAPTIRRRFIDMEFGQMN 115

Query: 153 PRHRRRMIDFERLMRGRN----RLLTEGYFDSSWCSSIEAQMAELGVKINIAR------- 201
           P +      ++++++ RN    RL      D+ +   +  Q+ + G ++ +AR       
Sbjct: 116 PLYLYHSAQYKKILKNRNAYLKRLQLGQTKDTVFLDVLTEQLVDTGSQVILARQAFLKNL 175

Query: 202 --------VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
                    E+ N    L ++Y        + LS    +D    Q   +L+++Y ++   
Sbjct: 176 ELAAQPIHTEISNQQEKLTLKYQSS-----VDLSENTNIDQIKSQFLESLRQQYQREKSQ 230

Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
           G         T +GPHR D+   + +       GS G+Q+   + + LA   L+   TG 
Sbjct: 231 GS--------TALGPHRDDVQF-WVNGKDVATFGSQGQQRTAALSVKLAEIHLMQQETGE 281

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            P+LLLD++ + LD  ++  L   + D   Q F+T        SL++ AK
Sbjct: 282 YPVLLLDDVLSELDASRQTHLLLAIQD-KVQTFITAP------SLSDVAK 324


>gi|119509397|ref|ZP_01628546.1| DNA repair and genetic recombination protein [Nodularia spumigena
           CCY9414]
 gi|119466011|gb|EAW46899.1| DNA repair and genetic recombination protein [Nodularia spumigena
           CCY9414]
          Length = 376

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 173/374 (46%), Gaps = 41/374 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++ +FRNY   ++ F A  TI VG+N  GK+N+LEA+  L+  R  R    AD  +
Sbjct: 3   LKNLHLRQFRNYQDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMGRVADFIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLRISWL 125
            G        A +E   G +D+++ L     RSV    IN + V R +D L     + + 
Sbjct: 63  EGQ-DIAQINAILERENGTSDLALTLRRNGRRSV---AINGESVRRQMDFLGVLNAVQFS 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----- 180
              +D +  G  + RR +LD ++  ++P +   +  + +++R RN  L +   DS     
Sbjct: 119 SLDLDLVRGGPDV-RRNWLDTLLIQLEPIYAHLLQQYNQVLRQRNAFLKKA-LDSADGIN 176

Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLI----------MEYVQKENFPHI 224
                 S  +  +AQ+   G K+   R   I  L+ +            E +Q    P +
Sbjct: 177 RVSTQDSTLAIWDAQLVTTGTKVIRRRDRAIQRLAPIAAAWHSSISGSTEVLQINYLPSV 236

Query: 225 KLSLTGFLDGKFDQSFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            L+       +  Q+F   +++  A +L+ G         TL+GPHR ++ +   ++   
Sbjct: 237 PLA--QIPPEEIQQAFLGKIQQRSAAELYRG--------TTLVGPHRDEVEL-IINQTPA 285

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
             +GS G+Q+ +++ + LA   LI       P+LLLD++ A LD  ++N L   + D   
Sbjct: 286 RQYGSQGQQRTLVLALKLAELELIEQVVQEPPLLLLDDVLAELDPFRQNQLLDAIQD-RF 344

Query: 344 QIFMTGTDKSVFDS 357
           Q  +T T  S FD+
Sbjct: 345 QTLITTTHLSSFDA 358


>gi|72382983|ref|YP_292338.1| recombination protein F [Prochlorococcus marinus str. NATL2A]
 gi|72002833|gb|AAZ58635.1| DNA replication and repair protein RecF [Prochlorococcus marinus
           str. NATL2A]
          Length = 348

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 154/343 (44%), Gaps = 36/343 (10%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM-EGLADIS 89
           I +G NGVGK+N+LE+I  LS  R  R     D+       +    A +  M E    +S
Sbjct: 9   IVIGQNGVGKSNLLESIELLSSLRSHRSNRNQDLI-----YWDQDQACLSAMIEDDQKLS 63

Query: 90  IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI-FSGLSME--------R 140
           ++L  +  R  +  + + ++ R +D          L+  M  + FS L +E        R
Sbjct: 64  LELNRKGGR--KAYKNDKLLNRQID----------LIGPMRSVGFSALDLELIRGEPSLR 111

Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSIEAQMAELGV 195
           R +LDR+V  ++P +   +  F RL+R R++L      +SS        S + QMA +  
Sbjct: 112 RHWLDRIVQQLEPIYSDLIGRFSRLLRQRSQLWRNLSLESSKDQNILLDSFDMQMALVST 171

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFD 253
           +I+  R  +++ L  +   + Q  +     L +T     K +  +S    +E   ++L +
Sbjct: 172 RIHRRRRRILDRLLPIASSWQQHLSNSQENLDITYLPGSKLEAEESERLWRESIERQLLE 231

Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
            R  + ++    +GPHR D+     D       GS G+Q+ +++ + LA   LI    G 
Sbjct: 232 MRSEEEITGNCRVGPHRDDVQFSIND-VDARRFGSAGQQRTIVLSLKLAELELIKMVYGK 290

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           +PILLLD++ A LD  KR  L         Q  ++ T    F+
Sbjct: 291 SPILLLDDVLAELDP-KRQLLLLEAVGQKHQCLISATHLESFE 332


>gi|160944263|ref|ZP_02091492.1| hypothetical protein FAEPRAM212_01772 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444445|gb|EDP21449.1| hypothetical protein FAEPRAM212_01772 [Faecalibacterium prausnitzii
           M21/2]
          Length = 373

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 157/370 (42%), Gaps = 34/370 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RN  + RL    + T+  G+NG GKTN+LEAI  L+ G+ FR    A++
Sbjct: 1   MRLLSLEVQNYRNICAARLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60

Query: 65  TRIGSPSFFSTFA-----RVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDEL 116
            R G  +F    A     R EG E      I++      +    R   +N    +    L
Sbjct: 61  VRRGE-AFAVLEADTQRDRPEGCEPAEPAHIRMTVGTPEAAKPGRYAAVNGAAPKRAAAL 119

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
                     P    +  G    RR+FLD  +  + P +      + R+++ +N LL   
Sbjct: 120 AGSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLASYRRYVRVLQQKNALLRH- 178

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                   S   Q      K  +  +E++N   +   E +Q+    ++KL          
Sbjct: 179 --------SANGQERPYAEKRTL--LEVLNTELAAQGEALQQRRREYLKLLAPRACANYA 228

Query: 237 DQSFCA--LKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIA 285
           + S  A  +   YA +   G   + + +R         +L G HR DL +   D+   + 
Sbjct: 229 ELSHGAERMSIRYAAQFAPGGLAELLRQRQEEELRAGQSLCGIHREDLELLLDDQPARV- 287

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           + S G+Q+ V++ + +A A   +  TG  P+LLLD++ + LDE ++  L   + +   Q 
Sbjct: 288 YASQGQQRSVVLSLKMAEAAAAAQITGEHPVLLLDDVLSELDEGRKQYLLTCMKE--KQT 345

Query: 346 FMTGTDKSVF 355
           F+T  D + F
Sbjct: 346 FVTSCDDTDF 355


>gi|167754087|ref|ZP_02426214.1| hypothetical protein ALIPUT_02375 [Alistipes putredinis DSM 17216]
 gi|167658712|gb|EDS02842.1| hypothetical protein ALIPUT_02375 [Alistipes putredinis DSM 17216]
          Length = 362

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 169/371 (45%), Gaps = 24/371 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  F+N     L F      FVGDNG GKTN+++A+ FLS  +     +     R
Sbjct: 3   LKKLSLINFKNIREENLEFRPGINCFVGDNGAGKTNVIDAVYFLSMCKSSLAMTDGQNMR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            GS  FF    +    EG ++  +    R  +  + L+ N    +  + L+ H+ +  +V
Sbjct: 63  HGS-DFFLLDGQYLTDEGRSESVVCAFAR--KGGKTLKRNG---KEYERLSDHVGLIPVV 116

Query: 127 ---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P+   + S  + ERRR+L+  +  +D  + + ++ +  ++  RNRLL     +   C
Sbjct: 117 IVSPADTMLISDAADERRRYLNGFISQLDRAYLQALVRYNAVLGERNRLLKISRDEQMLC 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+ E G  I+  R E+   L   +  Y +  +    +++L  +     D  F  L
Sbjct: 177 I-YDRQLVEQGGIIHRKRSEIAALLEPEVARYYRHLSSDREQVTLE-YRSELNDTPFEEL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L   R+ D ++  T  G HR DL++      +   +GS G+QK  L+ + LA 
Sbjct: 235 -------LLKSREKDFVNGFTTAGIHRDDLVLHIGGYPLR-KYGSQGQQKSFLIALKLAQ 286

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVFDSL 358
             L++   G  PILLLD++   LD  +   L R+V D G  QIF+T  +    +++ D  
Sbjct: 287 YALVAQAKGEKPILLLDDLFDKLDAGRVEQLIRLVGDDGFGQIFITDCNPTRLRTILDKT 346

Query: 359 NETAKFMRISN 369
            +      + N
Sbjct: 347 GDDYSLFTVEN 357


>gi|218442160|ref|YP_002380489.1| recombination protein F [Cyanothece sp. PCC 7424]
 gi|226737786|sp|B7KID4|RECF_CYAP7 RecName: Full=DNA replication and repair protein recF
 gi|218174888|gb|ACK73621.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7424]
          Length = 384

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 175/369 (47%), Gaps = 24/369 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + +  FRNY   ++ F++Q TI VG+N  GK+N+LEA+  L+  +  R +   D+  
Sbjct: 3   LKTVQLRSFRNYREQQVNFESQKTIIVGNNAQGKSNLLEAVELLATLKSHRVSRDRDLVL 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+ +     A +E   GLA++ + L     R+V   Q  + + R +D L     + +  
Sbjct: 63  EGA-TTGQILATLERAYGLAELGLILRVSGRRTVILNQ--EPLRRQLDFLGVLNAVQFSS 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------EGYFDS 180
             +D +  G    RR ++D ++  ++P +   +  + ++++ RN LL       E   + 
Sbjct: 120 LDLD-LVRGSPESRRSWIDTLLVQLEPIYAHILSQYYQVLKQRNALLKKIRQQEEDSQNP 178

Query: 181 SWCSS-----------IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
           S  S             ++Q+AE G ++   R  ++  L+ L  ++    +    +L + 
Sbjct: 179 SLSSEQLSNDISQLKLWDSQLAETGSRVTRRRARVLERLTPLAQKWHANISGKTEQLEIQ 238

Query: 230 GFLDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
              +  + +     +++ + +K+   R  +     T++GPHR D I    ++     +GS
Sbjct: 239 YMPNVNWTEDEPMQVQQAFLEKIEKRRIAEQQLGTTVVGPHR-DEIEFIINQTPAKYYGS 297

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+Q+ +++ + LA   LI    G  P+LLLD++ A LD  ++N L   + D   Q  +T
Sbjct: 298 QGQQRTLVLALKLAELHLIEEVVGEPPLLLLDDVLAELDPHRQNQLLDAIED-RFQTLIT 356

Query: 349 GTDKSVFDS 357
            T  + F++
Sbjct: 357 TTHLNSFET 365


>gi|299141070|ref|ZP_07034208.1| RecF protein [Prevotella oris C735]
 gi|298578036|gb|EFI49904.1| RecF protein [Prevotella oris C735]
          Length = 366

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 154/366 (42%), Gaps = 32/366 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR--- 66
           L+I  ++N     +    +   F+G NGVGKTN+L+A+ +LS    F R+++  +     
Sbjct: 6   LSILNYKNIREATISLSPKLNCFIGSNGVGKTNVLDAVHYLS----FCRSAFNPIDSQVI 61

Query: 67  IGSPSFF---STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + +  F      +   EG E      +K  T+     +  + N    R    L++H+ + 
Sbjct: 62  MHNQDFLVLEGNYTTDEGEEEQIYCGMKRGTK-----KHFKRNKKEYR---RLSQHIGLI 113

Query: 124 WLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFD 179
            LV   PS   +  G S ERRR LD ++   D  +   +  + + ++ RN LL  E   D
Sbjct: 114 PLVFASPSDSVLIEGGSEERRRLLDLVISQYDHAYIEALSAYNKALQQRNALLKMEDEPD 173

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +     E QMA  G  I   R   +  L  +        +  H  +SL     G+    
Sbjct: 174 KALLEIWEEQMATNGEVIYQKRDTFVKRLVPVFQNIYSHISGGHETVSLNYVSHGQRGLL 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++ +        R  D     +L G HR DL +   D       GS G+ K   + +
Sbjct: 234 LDTIQRD--------RYKDRAVGYSLHGVHRDDLEM-LLDGYQMKREGSQGQHKTYALAL 284

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358
            LA    + +T+   P+LLLD+I   LD D+   + ++V   G  QIF+T T++   D +
Sbjct: 285 KLAQFDFLRHTSNSTPLLLLDDIFDKLDADRVEQIVQLVGGEGFGQIFITDTNRDHLDRI 344

Query: 359 NETAKF 364
                F
Sbjct: 345 LANGDF 350


>gi|28492970|ref|NP_787131.1| recombination protein F [Tropheryma whipplei str. Twist]
 gi|28572178|ref|NP_788958.1| DNA replication and repair protein recF [Tropheryma whipplei
           TW08/27]
 gi|51316419|sp|Q83N51|RECF_TROWT RecName: Full=DNA replication and repair protein recF
 gi|51316420|sp|Q83NZ4|RECF_TROW8 RecName: Full=DNA replication and repair protein recF
 gi|28410309|emb|CAD66695.1| DNA replication and repair protein recF [Tropheryma whipplei
           TW08/27]
 gi|28476010|gb|AAO44100.1| recF protein [Tropheryma whipplei str. Twist]
          Length = 363

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 169/376 (44%), Gaps = 59/376 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M N + I  +N+  FRNY    + F     +  GDNG GKTN+ EAI FLS   GF    
Sbjct: 1   MQNNL-ISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLS---GF---- 52

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR-DDRSVRC-LQINDVVIRVVDELNK 118
                  GS   +     ++  E  A+IS K++++   R+V   +  N   I  VD    
Sbjct: 53  -------GSHRTYKNQPLIKSGEQKAEISAKIQSKYGTRNVYIGISCNSNNILKVDGKPS 105

Query: 119 HLR-----ISWLVPSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMID----FERLMR 167
            LR      S ++ S + I    G    RR++LD ++     R R  M+D    ++R ++
Sbjct: 106 KLRDLVSVFSCVIFSPEDIDLVKGDPGHRRKYLDDIIC----RARPMMLDIYSAYDRTLK 161

Query: 168 GRNRLLTEGYFDSSWCSS-----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
            RN LL    F  S C S        ++ ELG++I  AR  ++  L+  I E+  K    
Sbjct: 162 QRNSLLKS--FRKSSCKSDLLDIWTQKLVELGLEIVNARKRLLKILNPKISEFYSK---- 215

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS--DLIVDYCDK 280
              +S T  L   F QS   L + +   L   R+++     TL GPHR   D++++ C  
Sbjct: 216 LAGVSSTAEL---FCQSSDCLIDTF--DLLRDREIEEGV--TLAGPHRDNVDILLNSCPA 268

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA---PILLLDEISAHLDEDKRNALFRI 337
               +  S GE   + + + L+   L+  T       P+++LD++ AHLD  ++  L + 
Sbjct: 269 R---SQSSQGESWTLALSMKLSLIELMRETKRLYDPDPVVILDDVFAHLDSYRKQKLAQE 325

Query: 338 VTDIGSQIFMTGTDKS 353
           V     Q  +T TD S
Sbjct: 326 VFSY-EQTIVTTTDNS 340


>gi|197286952|ref|YP_002152824.1| recombination protein F [Proteus mirabilis HI4320]
 gi|227354807|ref|ZP_03839224.1| recombination protein F [Proteus mirabilis ATCC 29906]
 gi|132248|sp|P22839|RECF_PROMI RecName: Full=DNA replication and repair protein recF
 gi|226737819|sp|B4F0U7|RECF_PROMH RecName: Full=DNA replication and repair protein recF
 gi|150880|gb|AAA83960.1| putative [Proteus mirabilis]
 gi|194684439|emb|CAR46163.1| dna replication and repair protein [Proteus mirabilis HI4320]
 gi|227165125|gb|EEI49956.1| recombination protein F [Proteus mirabilis ATCC 29906]
          Length = 362

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 161/364 (44%), Gaps = 18/364 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I  FRN     L         VG NG GKT+ILEAI  L  GR FR A    V +   
Sbjct: 6   LLIRHFRNIEQADLPLADGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSAQANRVIQHDE 65

Query: 70  PSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            +F     R+ G+ E     SI L ++D      ++I+      + EL K L +  + P 
Sbjct: 66  NAFI-LHGRLSGLDEESRGYSIGL-SKDREGNSTVRIDGSDGHKIAELAKLLPMQLITPE 123

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI-- 186
              + +G    RR F+D   F  +PR      D +R+++ RN  L +    SS+   +  
Sbjct: 124 GFTLLNGGPKYRRAFIDWGCFHNEPRFFAAWSDLKRVLKQRNAALRQA---SSYRQLLPW 180

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E    ++  I E  Q    P   L ++ F  G +D+     + +
Sbjct: 181 DKELILLTEQISQWRAEYTEDIAKDIEETCQL-FLPEFTLKVS-FQRG-WDK-----ETD 232

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA+ L    + D +   T +G H++DL +      +     S G+ K+++  + LA    
Sbjct: 233 YAQLLERQFERDKVLSYTSLGAHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQGEY 291

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
            +   G   + LLD+ ++ LD ++R  L   +    +Q+F++  T   V D L+  ++  
Sbjct: 292 FTRKNGQRCLYLLDDFASELDANRRQLLAERLKSTQAQVFVSAITSGQVKDMLDVNSRLF 351

Query: 366 RISN 369
            + +
Sbjct: 352 SVEH 355


>gi|288800759|ref|ZP_06406216.1| RecF protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332220|gb|EFC70701.1| RecF protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 369

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 161/371 (43%), Gaps = 36/371 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI  LN   ++N   + L    +   F+G NGVGKTN+L+A+ +LS  R       + V 
Sbjct: 5   KITLLN---YKNIEDITLDLSPKMNCFIGHNGVGKTNMLDAVYYLSFCRSSSNTVDSQVM 61

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDEL 116
            +    FF        +EGL       E  D+  + C          + N    + + + 
Sbjct: 62  -MHDKDFFV-------LEGL----YTNEANDEELIYCGMKRGSKKHFKRNKKEYKRLSQH 109

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TE 175
              + + ++ PS   +  G S +RRRFLD ++  +D  +   ++ + + ++ RN LL  E
Sbjct: 110 IGFIPLVFVSPSDVALIEGPSEDRRRFLDIVISQLDVTYMEALLRYSKALQQRNALLKQE 169

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
              D++  S  E +MAE G  +   R+  +     +  +  Q+ +     +SL       
Sbjct: 170 NEPDNTLISLFEEEMAEQGTIVYQKRLAFVENFIPVFQQIYQQISGGKETVSLNYI---- 225

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
              S C  + +  + +   R  D     +L G HR DL +      +    GS G+ K  
Sbjct: 226 ---SHCQ-RGDLLEVIQRDRFKDRAVGYSLHGIHRDDLEMLLGGYQMK-KEGSQGQNKTF 280

Query: 296 LVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS 353
           ++ + LA    +  T +   P+LLLD+I   LD ++   +  +V  D   QIF+T T++ 
Sbjct: 281 VLALKLAQFDFLKRTASKTTPLLLLDDIFDKLDANRVERIVNLVANDSYGQIFITDTNRD 340

Query: 354 VFDSLNETAKF 364
             DS+ +   F
Sbjct: 341 HLDSILKMGNF 351


>gi|218129656|ref|ZP_03458460.1| hypothetical protein BACEGG_01235 [Bacteroides eggerthii DSM 20697]
 gi|317477510|ref|ZP_07936735.1| DNA replication and repair protein RecF [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988386|gb|EEC54709.1| hypothetical protein BACEGG_01235 [Bacteroides eggerthii DSM 20697]
 gi|316906311|gb|EFV28040.1| DNA replication and repair protein RecF [Bacteroides eggerthii
           1_2_48FAA]
          Length = 378

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 150/355 (42%), Gaps = 16/355 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F  +   F G NG+GKTN+L+A+ FLS  +       +   R
Sbjct: 3   LKHISILNYKNLEQVELAFSPKLNTFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                FF      E  +G  + I   ++ R  +  +  +      R+ D +   L +  +
Sbjct: 63  -HDADFFVIQGFYEASDGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVMV 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184
            P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   +     
Sbjct: 119 SPADSALINGGSDERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKNEMPVEEELFL 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             E  MA+ G  +   R E I     +   +    +    K+ L      +       LK
Sbjct: 179 VWEEMMAQAGEVVFRKREEFIKEFIPIFQSFYSFISQDKEKVGLIYDSHARDASLLEVLK 238

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E         R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA  
Sbjct: 239 E--------SRTRDQIMGFSLRGVHKDELNMLLGDFPIK-REGSQGQNKTYLVALKLAQF 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358
             +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +
Sbjct: 290 DFLKRTGATVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRI 344


>gi|229818506|ref|YP_002880032.1| DNA replication and repair protein RecF [Beutenbergia cavernae DSM
           12333]
 gi|259563356|sp|C5BUP6|RECF_BEUC1 RecName: Full=DNA replication and repair protein recF
 gi|229564419|gb|ACQ78270.1| DNA replication and repair protein RecF [Beutenbergia cavernae DSM
           12333]
          Length = 397

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 161/373 (43%), Gaps = 38/373 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +++FR+YA L +  +   T FVG NG GKTN++EAI +L      R +  A + R G+
Sbjct: 6   LALTDFRSYADLVIGLEPGITAFVGPNGQGKTNLVEAIGYLGTFSSHRVSGDAALVRWGA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                   R + +       ++LE    R+ R  +++   +  V E     R     P  
Sbjct: 66  E---RAVVRAKVVRRARPTLVELEIVAGRANRA-RVDRSPVSRVREAAGIARSVIFAPED 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------EGYFDSS 181
             +  G    RRRFLD ++  + PR      ++ER++R R  LL          G  + +
Sbjct: 122 LALVKGDPDGRRRFLDDLLVQLSPRLAGVRSEYERVLRQRTALLKSAGPARRRSGDGEPA 181

Query: 182 WCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT---GFLDGK 235
              ++   +  +A  G ++  ARV ++  L   +    ++ +    +  ++      + +
Sbjct: 182 ALRTLDVWDGHLARAGAELVAARVRLVQDLRPHVGATYEQVSAAQSEARISYRASVEEAR 241

Query: 236 FDQSFCALKEEYAKK-----LFDGRKMDSMSR-RT--------LIGPHRSDLIVDYCDKA 281
            D +   + E    +     L + R +++M+R RT        L+GPHR DL++   D  
Sbjct: 242 PDDAPTEVVESVETELTRADLVEARLLEAMARLRTREIERGVSLVGPHRDDLVLTLADMP 301

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLI----SNTTGFAPILLLDEISAHLDEDKRNALFRI 337
               + S GE     + + LA   L+        G  P+L+LD++ A LD  +R  L  I
Sbjct: 302 AK-GYASHGESWSYALALRLASYALLRDDGEAGGGGEPVLVLDDVFAELDARRRTRLASI 360

Query: 338 VTDIGSQIFMTGT 350
           V     Q+ +T  
Sbjct: 361 VAS-AEQVLVTAA 372


>gi|21229481|ref|NP_635398.1| recombination protein F [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66766355|ref|YP_241117.1| recombination protein F [Xanthomonas campestris pv. campestris str.
           8004]
 gi|25453248|sp|Q8PEH3|RECF_XANCP RecName: Full=DNA replication and repair protein recF
 gi|81307651|sp|Q4V0S6|RECF_XANC8 RecName: Full=DNA replication and repair protein recF
 gi|21110941|gb|AAM39322.1| DNA replication and repair RecF protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571687|gb|AAY47097.1| DNA replication and repair RecF protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 368

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 151/367 (41%), Gaps = 20/367 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++     +   +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLR 121
            R G       F  VE  E   D + +      R        +++   +  +  L   L 
Sbjct: 61  IRQGGQD-LEIF--VEWRERAGDSTERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALA 117

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           +    P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G     
Sbjct: 118 VVTFEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQGA-QPQ 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
              + + ++AE G  +   R++ +  L   ++  V     P + LS   F  G       
Sbjct: 177 MLDAWDHELAESGETLTSRRLQYLERLQERLVP-VATAIAPSLGLSALTFAPGWRRHEVS 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGI 299
                 A  L   R+ D  +  T  GPHR+D   + D       +   S G+ K+  +  
Sbjct: 236 -----LADALLLARERDRQNGYTSQGPHRADWAPLFDALPGKDAL---SRGQAKLTALAC 287

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA A   ++  G  PI+ LD++ + LD   +  + + +    +Q+ +T T+  +   L 
Sbjct: 288 LLAQAEDFAHERGEWPIMALDDLGSELDRHHQARVIQRLASAPAQVLITATE--LPPGLA 345

Query: 360 ETAKFMR 366
           +  K +R
Sbjct: 346 DAGKTLR 352


>gi|325915699|ref|ZP_08178004.1| DNA replication and repair protein RecF [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538116|gb|EGD09807.1| DNA replication and repair protein RecF [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 344

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 137/321 (42%), Gaps = 8/321 (2%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
           +  GDNG GKT++LEA+  ++ GR FR      + + G+          EG     + S 
Sbjct: 3   LLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGASDLEVFVEWREGTGEAGERSR 62

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           +   R        +++   +  +  L   L +    P    + SG    RRRFLD  +F 
Sbjct: 63  RAGLRHTGQEWTGRLDGEDVAQLGSLCAALAVITFEPGSHVLISGGGEPRRRFLDWGLFH 122

Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
           ++P        + R ++ RN LL +G        + + ++AE G  +   R+  +  L  
Sbjct: 123 VEPDFLALWRRYARALKQRNALLKQGA-QPRMLDAWDHELAESGETLTSRRLRYLERLQE 181

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
            ++  V     P + LS   F  G + +   +L    A  L   R+ D  +  T  GPHR
Sbjct: 182 RLIP-VATAIAPSLGLSALEFAPG-WKRHEVSL----ADALLLARERDRQNGYTSQGPHR 235

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
           +D    + D        S G+ K+  +   LA A   ++  G  P++ LD++ + LD   
Sbjct: 236 ADWAPRF-DALPGKDALSRGQAKLTALACLLAQAEDFAHERGEWPVIALDDLGSELDRHH 294

Query: 331 RNALFRIVTDIGSQIFMTGTD 351
           + ++ + +    +Q+ +T T+
Sbjct: 295 QASVLQRLAAAPTQVLITATE 315


>gi|312130769|ref|YP_003998109.1| DNA replication and repair protein recf [Leadbetterella byssophila
           DSM 17132]
 gi|311907315|gb|ADQ17756.1| DNA replication and repair protein RecF [Leadbetterella byssophila
           DSM 17132]
          Length = 354

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 157/351 (44%), Gaps = 35/351 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRNY      F       VG NG GKTN+L+A+ FL+  +     S        S
Sbjct: 6   LRLYNFRNYEERFFTFSPTLNCIVGKNGSGKTNLLDAVYFLALSK-----SSIQTQDSLS 60

Query: 70  PSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
             F   F+ +EG     + I I L     ++V     + V  ++ D + K+  +  L P+
Sbjct: 61  IRFEEDFSSLEGAFSNQNIIGIHLLRNGKKTVTS--NHKVYEKLSDHIGKY-PVVLLAPN 117

Query: 129 -MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWC 183
             D I  G +  RR+  D ++  +DP + +  + + + +  RN LL     + Y D    
Sbjct: 118 DTDYIRDG-AETRRKLFDGILSQVDPEYLQTYLKYNKTLDQRNSLLKQFAEQNYVDKDLL 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIM-EYVQ-KENFPHIKLSLTGFLDGKFDQSFC 241
           S     +  LG  I   R   I + S L   +YV   E    +++  +  L   ++++F 
Sbjct: 177 SIYTESLLVLGKAIFEKRKSFIESFSPLFKDQYVHLSEGREQVEIQYSSDL---WEENF- 232

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
             +E++ K L      D  ++RT +G H+ D +    D  +    GS G++K  ++ I L
Sbjct: 233 --EEQFQKNL----NRDLSAQRTTMGVHKDDFLF-LMDGVLVKKFGSQGQRKSFVMAIKL 285

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS----QIFMT 348
           A  + +       PILLLD+I   LD D+R  + R++  + S    QIF+T
Sbjct: 286 AQFQCLELEKETKPILLLDDIFDKLD-DRR--ILRLIEMMNSGAFGQIFLT 333


>gi|295103717|emb|CBL01261.1| recF protein [Faecalibacterium prausnitzii SL3/3]
          Length = 373

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 156/365 (42%), Gaps = 34/365 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  +RN  + RL    + T+  G+NG GKTN+LEAI  L+ G+ FR    A++ R G 
Sbjct: 6   LEVQNYRNICAARLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAELVRRGE 65

Query: 70  PSFFSTFA-----RVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNKHLR 121
            +F    A     R EG E      I++      +    R   +N    +    L     
Sbjct: 66  -AFAVLEADTQRDRPEGCEPAEPAHIRMTVGTPEAAKPGRYAAVNGAAPKRAAALAGSFP 124

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
                P    +  G    RR+FLD  +  + P +      + R+++ +N LL        
Sbjct: 125 AVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLASYRRYVRVLQQKNALLRH------ 178

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
              S   Q      K  +  +E++N   +   E +Q+    ++KL          + S  
Sbjct: 179 ---SANGQERPYAEKRTL--LEVLNTELAAQGEALQQRRREYLKLLAPRACANYAELSHG 233

Query: 242 A--LKEEYAKKLFDG--------RKMDSM-SRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           A  +   YA +   G        R+ + + + ++L G HR DL +   D+   + + S G
Sbjct: 234 AERMSIRYAAQFAPGGLAALLRQRQEEELRAGQSLCGIHREDLELLLDDQPARV-YASQG 292

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+ V++ + +A A   +  TG  P+LLLD++ + LDE ++  L   + +   Q F+T  
Sbjct: 293 QQRSVVLSLKMAEAAAAAQITGEHPVLLLDDVLSELDEGRKQYLLTCMKE--KQTFVTSC 350

Query: 351 DKSVF 355
           D + F
Sbjct: 351 DDTDF 355


>gi|198275605|ref|ZP_03208136.1| hypothetical protein BACPLE_01774 [Bacteroides plebeius DSM 17135]
 gi|198271234|gb|EDY95504.1| hypothetical protein BACPLE_01774 [Bacteroides plebeius DSM 17135]
          Length = 396

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 159/361 (44%), Gaps = 27/361 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N     L F  +    +G NG+GKTN+++A+ +LS  +       +   R
Sbjct: 26  LKRISILNYKNLEQAELAFSRKMNCIIGKNGMGKTNLMDAVYYLSFCKSATNPIDSQNIR 85

Query: 67  IGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                FF      E  +G   ++   L+ R  +  +  +      +    L+ H+ +  L
Sbjct: 86  -HEQDFFVLQGFYETEDGDPEEVYCGLKRRQKKQFKRNK------KEYTRLSDHIGLIPL 138

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
           V   P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   D  
Sbjct: 139 VMVSPADTLLIAGGSEERRRFMDVVISQFDREYLDALIRYNKALVQRNTLLKAELEPDEE 198

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQS 239
             +  E  MA  G  +   R + I+    +   Y     +N   +KLS          QS
Sbjct: 199 LMNVWEEMMASTGEVVFRKRQQFIDEFIPIFQSYYSYISQNQEEVKLSY---------QS 249

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             A  +  A  L   R+ D +   +L G H+ DLI+   +  +    GS G+ K  L+ +
Sbjct: 250 HAAEGDLLA-LLRANRQRDRVMGYSLKGIHKDDLIMQLGEFPMK-REGSQGQNKTYLIAL 307

Query: 300 FLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDS 357
            LA    +  T +G  P++LLD+I   LD  +   + ++V  D   QIF+T T++   D 
Sbjct: 308 KLAQFEFLKRTGSGTTPLILLDDIFDKLDALRVEQIVKLVAGDNFGQIFITDTNRDHLDR 367

Query: 358 L 358
           +
Sbjct: 368 I 368


>gi|328954617|ref|YP_004371950.1| DNA replication and repair protein RecF [Coriobacterium glomerans
           PW2]
 gi|328454941|gb|AEB06135.1| DNA replication and repair protein RecF [Coriobacterium glomerans
           PW2]
          Length = 375

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 165/392 (42%), Gaps = 57/392 (14%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           + L + ++R++    L  D   T+  G N VGKTN++EA+  L+ G+ FR+AS +++ R 
Sbjct: 6   RSLRLRDYRSFERFSLDLDPGTTVLSGRNAVGKTNLIEALQLLTFGQSFRKASPSELIRD 65

Query: 68  GSPSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV---DELNKH 119
           G+         S   R   +  +A    +  +R+ +  R   I  V+  V+   D L+  
Sbjct: 66  GAERAVLDLNLSGGGRDIDLGLVATAGKRAFSRNGKPCRASSIRGVMPSVLFCPDHLDMV 125

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
            R + +              RR  LD     +  R+ + +  + R++  RN LL +    
Sbjct: 126 KRSAGV--------------RRGALDDFGTQLSARYAQLVGSYGRIVEQRNALLRDVALS 171

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                + +  + E G  +   R+ ++  L + +          H  ++    +D  +  S
Sbjct: 172 DGLLDAWDDALIETGCALIAHRISLLARLRAAMRRI-------HASIAPGEQMDVGYRAS 224

Query: 240 FCA-------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
            C              L+  Y   L   R  +     +L+GPHR ++       A T+A 
Sbjct: 225 ICPTEDLLTERADRATLERRYRGALAAARPDEIRRCVSLMGPHRDEI-------AFTVAG 277

Query: 287 ------GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                  S G+Q+ +++   +A   +     G  P+LLLD++ + LDE +R+A+   V +
Sbjct: 278 RDARSFASQGQQRTLVLSWKIAEVDVACEILGAPPLLLLDDVMSELDEPRRSAVMEFVEE 337

Query: 341 IGSQIFMTGTDKSVF-DSLNETAKFMRISNHQ 371
            G Q  ++ T+   F  S+   AK + I N +
Sbjct: 338 -GIQTVISTTNLGYFSSSMLRRAKVVTIGNER 368


>gi|284041474|ref|YP_003391814.1| DNA replication and repair protein RecF [Conexibacter woesei DSM
           14684]
 gi|283945695|gb|ADB48439.1| DNA replication and repair protein RecF [Conexibacter woesei DSM
           14684]
          Length = 370

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 158/357 (44%), Gaps = 34/357 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  FR+Y +  +   A  T+  G NG GKTN+L+A+ F   GR  R  +  ++
Sbjct: 1   MRIVRLALRNFRSYPTAEVELGAGLTVVSGRNGAGKTNLLDALYFGCTGRSARTTNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G           E  +G  ++S+  E+   +  R +     V R++D   + L +S 
Sbjct: 61  VRFGE-QVTRVVVMTEADDGAHELSVAFESGQPK--RLMADGVRVERLLDVPGRPL-VSV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    +  G    RR  +D++V A+ P        + + +  RN L+       +  +
Sbjct: 117 FLPDRLELVKGTPSLRRAHIDQVVAALWPARAATRRAYAQALAQRNALVARIRAGGASAA 176

Query: 185 SIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF- 240
           S+ A   ++A  GV +   R   I ++ +          F  I   L   LDG    ++ 
Sbjct: 177 SLPAWDRELARHGVALMADRAAAIESVQT---------RFGTIAGELG--LDGDPAVAYR 225

Query: 241 --------CALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGE 291
                     L+EE A+     R    + R  T  GPHR DL +    + +  A+GS G+
Sbjct: 226 PRSRAADAGGLEEELAE-----RHASDLERGFTQHGPHRDDLALTRERRELR-AYGSQGQ 279

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           Q++ L+ + LA    I+ T    P++LLD++ + LD ++R  L  ++  +G  +  T
Sbjct: 280 QRLTLLALLLAEREAIAATRDAVPVMLLDDVMSELDRERRGRLVELLRGVGQSVITT 336


>gi|212712614|ref|ZP_03320742.1| hypothetical protein PROVALCAL_03709 [Providencia alcalifaciens DSM
           30120]
 gi|212684830|gb|EEB44358.1| hypothetical protein PROVALCAL_03709 [Providencia alcalifaciens DSM
           30120]
          Length = 364

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 153/367 (41%), Gaps = 24/367 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         +G NG GKT+ILEAI  L  GR FR      V R   
Sbjct: 6   LLIRDFRNIEDADLSLATGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQANRVIRHDQ 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
             F         +    +  + +      D  VR   I+      + EL K L +  + P
Sbjct: 66  EQFILHGKLGHPDTERKVLSLGLSKNREGDSKVR---IDGTDGHKIAELAKLLPMQLITP 122

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCS 184
               + +G    RR F+D   F  +        D +RL++ RN   R +T       W  
Sbjct: 123 EGFTLLNGGPKYRRAFIDWGCFHNEALFFSTWSDLKRLLKQRNAALRQVTRYEQIRHW-- 180

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+A +  +I+  R E I  ++  I E   K+  P   LS++ F  G +D+      
Sbjct: 181 --DQQLAPISEQISQWRGEYIAGIAENI-EQTCKQFLPEFSLSVS-FQRG-WDKEI---- 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAH 303
            +Y+++L    + D     T  GPH++DL +      I +    S G+ K+++  + LA 
Sbjct: 232 -DYSEQLERQFERDRALTYTSSGPHKADLRIRA--NGIPVEDMLSRGQLKLLMCALRLAQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
               +  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  T   V D ++  +
Sbjct: 289 GEYFTQQSGQQCLYLLDDFASELDSGRRQLLAARLKATQAQVFVSAITPAQVNDMIDANS 348

Query: 363 KFMRISN 369
           K   +  
Sbjct: 349 KMFSVEQ 355


>gi|255020211|ref|ZP_05292280.1| DNA recombination and repair protein RecF [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970353|gb|EET27846.1| DNA recombination and repair protein RecF [Acidithiobacillus caldus
           ATCC 51756]
          Length = 357

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 164/380 (43%), Gaps = 56/380 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I   R    ++L    +    VG NG GK+ +LEA+  L  G+ +RR     +
Sbjct: 1   MPVAVLEIRNLRCIEHMQLAAGPRWNWLVGANGAGKSTVLEALHLLGLGQSWRRGPR-QL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS  F  +  R E + GL D  +  +   +R +R                +HLR  W
Sbjct: 60  IRDGSSCFLLSVLRNEDL-GLNDRIVLEQNGGERQMRF-------------AGEHLRSQW 105

Query: 125 ----LVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRR---RMIDFERLMRGRNR 171
               L+P            +G + +RRR LD   + I  RHR     +  + RL+  RN 
Sbjct: 106 ALLELLPIQAIHSGNSEFIAGSADDRRRQLD---WGIYRRHREYGDHLRQYRRLLAQRNA 162

Query: 172 LL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSL 228
            L ++G+ +  W    E  +A  G  ++  R   I  L   +  + ++   +   I+L L
Sbjct: 163 WLRSQGHKEDPW----EHLLAGAGELLHEYRSREIAYLQEGLCHFWKERTGSTSEIRLHL 218

Query: 229 -TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI--VDYCDKAITIA 285
            +G+ DG            +A+ L + R  D+ +  T  GPHR++++  VD    A +++
Sbjct: 219 QSGWRDGM----------RFAEVLREDRSSDAETGFTRSGPHRANILFRVDGRSAADSLS 268

Query: 286 HGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
            G    Q   L   F LA  + I ++    P++L+D+ +A LD   R    + +  +G Q
Sbjct: 269 RG----QLRTLGNCFRLAQLQAIKDSGLELPVVLIDDFAAELDPAGRLWWRQQLDALGVQ 324

Query: 345 IFMTGTDKSVFDSLNETAKF 364
           +F  GT+ +      E  ++
Sbjct: 325 VFAAGTEAAALPMNAEDCQW 344


>gi|332667472|ref|YP_004450260.1| DNA replication and repair protein recF [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336286|gb|AEE53387.1| DNA replication and repair protein recF [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 365

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 24/350 (6%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           ++ F+NY + +L    +    VG+NG+GKTN+L+AI +L   +     S+ ++T      
Sbjct: 8   LANFKNYENQKLDCSPRLNCLVGNNGMGKTNLLDAIYYLCMAK-----SHFNLTDNAIAR 62

Query: 72  FFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130
               F R+EG   L     K+  +   R ++ L+ NDV    + E    L + ++ P   
Sbjct: 63  HHEAFFRLEGHFVLHGKKEKIVAKVMPRKLKELERNDVAYAKLAEHIGLLPVVFIGPDDI 122

Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190
           ++    S ERRRFLD  +  +D R+   +I + +++  RN LL      S    S+    
Sbjct: 123 QLIREGSEERRRFLDNTLSQLDQRYLYELIAYNKVLHQRNALLKNLAERSGGNLSL---- 178

Query: 191 AELGVKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA-----LK 244
                 +++   ++I+ AL  L       + F  I  S   ++ G+ ++         L+
Sbjct: 179 ------LDVYDEQLIDPALYVLEQRAKFAQKFTAIFQSTHQYISGRGEEVQLTYESQLLE 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +    L + R+ D   +RT  G HR DL+    +  +    GS G+ K  L+ + LA  
Sbjct: 233 NDLGDLLANSRQRDLALQRTTKGIHRDDLVFSLGEHPLK-KFGSQGQLKSFLLALKLAQY 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS 353
            ++       PILLLD++   LD  +   L R++T+    QIF+T T ++
Sbjct: 292 EMLRQNKAVPPILLLDDLFDKLDAQRVTHLLRLLTEGQFGQIFITDTHET 341


>gi|323493783|ref|ZP_08098901.1| recombination protein F [Vibrio brasiliensis LMG 20546]
 gi|323311917|gb|EGA65063.1| recombination protein F [Vibrio brasiliensis LMG 20546]
          Length = 360

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 155/365 (42%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V +   
Sbjct: 6   LIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRVIQNDC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  NELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSWCSS 185
               + +     RR F+D  VF  +         F+RL + RN LL     Y + S+   
Sbjct: 121 EGFDLLTDGPKHRRSFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRELSYW-- 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + +MA L   I+  R   I  +     E  Q    P  ++ L  +     D  +  + E
Sbjct: 179 -DQEMARLAENISQWRATYIEQMKVKAEEICQA-FLPEFEIQLKYYRGWDKDTPYQDILE 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           +  ++       D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 237 KNFER-------DQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  TD  + D  +E  + 
Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDSQIADMRDENGRM 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|78187987|ref|YP_378325.1| RecF protein [Chlorobium chlorochromatii CaD3]
 gi|78170186|gb|ABB27282.1| RecF protein [Chlorobium chlorochromatii CaD3]
          Length = 364

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 154/354 (43%), Gaps = 24/354 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K++    S FRN+ SL        TI  G NG GKT++LE I + +  +G   A  ++ 
Sbjct: 1   MKLQRTIFSGFRNHTSLLFEPSEGVTIIYGANGSGKTSLLEGIHYGALTKGLLGAPDSEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL-RIS 123
                   F T A       L+D +I +       +   +   V  + V   + H+ RI 
Sbjct: 61  LS------FDTEAFTLDSHFLSDSNIPIHVLVTYQLEGEKQVIVDRQEVKPFSSHIGRIP 114

Query: 124 WLV--PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
            +   P    + SG   ERRRFLD  +  +D R+  R+I + R+++ RN LL +    S 
Sbjct: 115 TITFSPYEISLVSGPPAERRRFLDSAISQLDHRYLDRLITYRRILQQRNALLAQ--LSSG 172

Query: 182 WCSS------IEAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFPHIKLSLTGF- 231
             S+         Q+AEL   +   R+  + + S     Y +   K   P I    T   
Sbjct: 173 EKSNRNTLPLWTTQLAELSAWLVERRLLFLTSFSPYFQHYYRYIIKGEEPSINYRCTSCP 232

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           L G  + +F  L + + ++  D    +    +TL G HR D++    +K I   + S G+
Sbjct: 233 LHG--NTTFQELYQLFLQRYSDIEAQEIQRGQTLFGAHRDDVLFFLNEKEIK-RYASQGQ 289

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
            +  L+ + ++ A L ++     P+ L D++ + LD  +   +  ++ + G  I
Sbjct: 290 LRSFLIALKISQAHLFADHLHEQPMCLFDDLFSELDGGRIEQILALLKECGQTI 343


>gi|322513483|ref|ZP_08066593.1| recombination protein F [Actinobacillus ureae ATCC 25976]
 gi|322120702|gb|EFX92586.1| recombination protein F [Actinobacillus ureae ATCC 25976]
          Length = 360

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 154/355 (43%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I+ FRN  S+ L         VG NG GKT++LEAI +L  GR F+      +    +
Sbjct: 6   LIINNFRNLQSIDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     R++  EG    S+ ++ +       L+IN      + +L   L +  + P  
Sbjct: 66  EDFV-LHGRID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186
             + +G    RR FLD  +F           + +RL++ RN  L +   Y +   W    
Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSYWANLKRLLKQRNAALHQVRSYVELKPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++ +L   ++  R     AL   I +  Q    P +++ ++      F Q +     +
Sbjct: 178 DIELVKLAETVSQMRASYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EQGAD 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305
           YA+ L  G + D  +  T+IGP ++D    +    + +    S G+ K+++  + LA   
Sbjct: 230 YAEILAQGFERDKATGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQGE 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   D LN+
Sbjct: 288 YLVAQKERQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITK---DQLNQ 339


>gi|154486349|ref|ZP_02027756.1| hypothetical protein BIFADO_00158 [Bifidobacterium adolescentis
           L2-32]
 gi|154084212|gb|EDN83257.1| hypothetical protein BIFADO_00158 [Bifidobacterium adolescentis
           L2-32]
          Length = 403

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 149/367 (40%), Gaps = 65/367 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R++    L F+    I  G NG+GKTNI+EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWDHCVLDFEPGINILQGSNGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-----IRVVDELNKH 119
              G PS                 +++    D    R  +I          RV    +++
Sbjct: 61  VEKGHPS----------------ATVRANIEDAGEQRTYEITIAARGANRARVDGGKSQY 104

Query: 120 LR-ISWLVPSM------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           +R I  LVPS+       R+ SG    RR FL++    + PR+ + +  F  + + R  L
Sbjct: 105 MRDIVGLVPSVSFTPEDQRLVSGDPATRRNFLNQAASLLLPRYAQSLQQFTHVAKQRAAL 164

Query: 173 LTE---------GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           L +          Y   +  S +E    Q   LGV++   R ++I  L         +E 
Sbjct: 165 LKQLSDGSGIDPEYGRQAVLSGLEVWTGQFIALGVQLTKDRNDVIGLL---------REP 215

Query: 221 FPHIKLSLTG-------FLDGKFDQSF-----CALKEEYAKKLFDGRKMDSMSRRTLIGP 268
           F  I  SL G         +  FD+        A    + ++++ G   +    + LIGP
Sbjct: 216 FTRIYASLAGEEEQADLVYEPSFDEVLLFDEPAAEISRHFQRIYPG---EVARGQNLIGP 272

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
            R DL +   D        S GE   + + + +A   ++S      PI++LD++ A LDE
Sbjct: 273 QRDDLTLRLNDMPAR-EFASNGEMWTMALALKMALYEVVSAQRDVKPIVILDDVFAQLDE 331

Query: 329 DKRNALF 335
            +R  + 
Sbjct: 332 SRRGQIL 338


>gi|296537347|ref|ZP_06899213.1| recombination protein F [Roseomonas cervicalis ATCC 49957]
 gi|296262327|gb|EFH09086.1| recombination protein F [Roseomonas cervicalis ATCC 49957]
          Length = 126

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 63/100 (63%)

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           HR+DL +    K I     STGEQK +LV   LA A L+++  GFAP+LLLDE++AHLD 
Sbjct: 11  HRTDLRLVLLPKQIPAELCSTGEQKALLVSTVLAQAALVASHRGFAPLLLLDEVAAHLDP 70

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
           ++R ALF  +  + +Q F+TGT+++ F  L   A+    S
Sbjct: 71  ERRAALFAALDALPAQCFLTGTEEAPFAPLRGHAQLFAAS 110


>gi|296125983|ref|YP_003633235.1| DNA replication and repair protein RecF [Brachyspira murdochii DSM
           12563]
 gi|296017799|gb|ADG71036.1| DNA replication and repair protein RecF [Brachyspira murdochii DSM
           12563]
          Length = 355

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 164/368 (44%), Gaps = 23/368 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  FRNY      F  +  +  G NG GKTNILEA+  L  G  FR     ++ +
Sbjct: 3   LKELTIRSFRNYNENVFEFSDKINVLYGHNGCGKTNILEAVYMLGNGVSFRTRLDRELVK 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV-VDELNKHLRISWL 125
            G+ ++   F R    E   +    +E    + V+ + I+   +    D + + L + +L
Sbjct: 63  NGNDNY---FLRGVFREDELNYDTNIEIAYQKKVKKVFIDKKEVSSRKDLIGRILYVIFL 119

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSS 181
               D + +   + RR + + ++  I   +   +I + +L++ RN  L+    E Y  +S
Sbjct: 120 PNDTDLVIAEPKL-RRDYFNMLISTISLEYLTALIKYNKLLKMRNVCLSTKPNEAYIYNS 178

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
             + +   +A    K +    + +N +   I      EN   IK   T  ++  F+++  
Sbjct: 179 DIAKLSIYIAGENKKYSSILEDKMNEIYKNIF---NDENPYAIKYQST--IEDIFNEN-- 231

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
               EY KKL          R T  G HR++    Y + +++    S GE+++  + + L
Sbjct: 232 ----EYVKKLESTLNEQIRMRTTYFGIHRAEYQFFYKE-SLSKKFSSQGEKRMFTLIMKL 286

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           A  +++S     +PILL+D+    LD  +R+ +   +  +G Q+F+T T+K    +  E 
Sbjct: 287 ASEKILSEYRRKSPILLIDDAMLELDNTRRDNILEYIKTLG-QVFITVTEKEKVKNF-EN 344

Query: 362 AKFMRISN 369
            K   I N
Sbjct: 345 GKVFDIPN 352


>gi|184199649|ref|YP_001853856.1| DNA replication and repair protein RecF [Kocuria rhizophila DC2201]
 gi|183579879|dbj|BAG28350.1| DNA replication and repair protein RecF [Kocuria rhizophila DC2201]
          Length = 474

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 143/340 (42%), Gaps = 34/340 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++ +FR YA L L      T+FVG NGVGKTNI+EA+ + +   G  R S      
Sbjct: 3   VDHLSLLDFRTYAGLDLALTPGLTVFVGPNGVGKTNIVEAVDWAA-TLGSHRVS------ 55

Query: 67  IGSPSFFSTFA-----RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            G+    +T A     R+    G     ++ E    R+ R        +R  + L   L 
Sbjct: 56  -GNTPLIATGAERAIVRLRVNRGGQRTVLEHELNATRANRVRLNRAAPVRARESLGI-LH 113

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEG 176
                P    +  G    RRRFLD +  A+ P       D+ER +R RN LL     + G
Sbjct: 114 TVLFSPEDLTLVKGDPSHRRRFLDDLATAMRPVLSAARSDYERALRQRNALLKSTRRSHG 173

Query: 177 YFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSL--TG 230
             DS  +  +    Q+A  G  +  AR++++ AL   +    Q+  E   H+ L    + 
Sbjct: 174 LSDSDRATLAVWNDQLARAGAAVMAARLQLLKALEPEVDRAYQQLTEGPKHVTLEYESSS 233

Query: 231 FLDGKFDQ-----SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT-- 283
              G   Q     S   L E   +      + +     TL+GPHR DL++   D      
Sbjct: 234 VAPGAEQQALQHFSVADLHELMMQAFERMERQERERGITLVGPHRDDLVIHLGDTPAKGY 293

Query: 284 IAHGSTGEQKVVL-VGIFLAHARLISNTTGFAPILLLDEI 322
            +HG T    + L +G +  H      + G AP+L+LD++
Sbjct: 294 ASHGETWSTALALRLGSWYVHL-ADDPSPGAAPVLILDDV 332


>gi|13959702|sp|O83049|RECF_TREPA RecName: Full=DNA replication and repair protein recF
          Length = 352

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 154/341 (45%), Gaps = 28/341 (8%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN A   +   +    FVG+NG GKTNILE +   + G  FR       TR  S   ++
Sbjct: 6   FRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFR-------TRTES-ELYA 57

Query: 75  TFA-----RVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           T A     RV+ M  G    ++++ +++ +  + ++ N   IR   EL   +       +
Sbjct: 58  THARSNEYRVKVMYRGEYTHTVQIFSKNGK--KRIEKNLKKIRTKKELISSIPCILFFHN 115

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
                 G    RR FLD+ +   +P +   +  +  L + +NR + E         +++ 
Sbjct: 116 DLDFVVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKEK--RVQLLDALDT 173

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
           Q+A +G  +   R +++   + +  +Y ++  +   +++    +     D S     EE 
Sbjct: 174 QIATVGFDLVQWRTQLVRDFNVIFTKYYERLGDLAQVRIE---YKPSWSDSSV----EEI 226

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
              L+  RK D     ++ GPHR D I     +A+ I   STG++++V + + ++ A   
Sbjct: 227 VHSLYKRRKHDLAMGMSMSGPHR-DKIHFTRSQALFIPQASTGQRRLVSLVLRMSQAVFY 285

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           +  TG  P+LL+D++   LD +KR   F +      Q+F T
Sbjct: 286 TGVTGKLPVLLMDDVLLELDPEKRER-FMMSLPPYDQLFCT 325


>gi|293391839|ref|ZP_06636173.1| DNA replication and repair protein RecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952373|gb|EFE02492.1| DNA replication and repair protein RecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 358

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 150/348 (43%), Gaps = 20/348 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN  ++ L  D      VG+NG GKT++LEAI +L  GR F+ A    V
Sbjct: 1   MAISRLTVENFRNLQAVDLELDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++       + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDQPH-FTLFGQIQEQRHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSW 182
           + P    + +G    RR FLD  +F              RL++ RN  L  T  Y   S 
Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVAFYNLWASLNRLLKQRNAALQPTSAY---SQ 173

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + ++ +L  +++  R +   AL   I E   +   P + +S++      F Q +  
Sbjct: 174 MKIWDVELVKLAEQVSQLRADYALALQPEI-EQTCRLFLPELDISVS------FHQGWE- 225

Query: 243 LKEEYAKKLFDGR-KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            KE+Y  +L +   + D     T+ GP ++D         +     S G+ K+++  + L
Sbjct: 226 -KEQYYAELLERNFERDRALGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRL 283

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           A    +        I L+D+ ++ LD+ KR  L   + + GSQ+F+T 
Sbjct: 284 AQGEHLMRQKQRHCIFLIDDFASELDQTKRRLLAERLQNSGSQVFVTA 331


>gi|255037634|ref|YP_003088255.1| DNA replication and repair protein RecF [Dyadobacter fermentans DSM
           18053]
 gi|254950390|gb|ACT95090.1| DNA replication and repair protein RecF [Dyadobacter fermentans DSM
           18053]
          Length = 365

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 150/347 (43%), Gaps = 24/347 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L ++ F++Y     VF       VG+NG GKTN+L+AI FL+      ++++ +   +G 
Sbjct: 6   LRLTYFKSYEEKAFVFGEHVNCIVGENGSGKTNLLDAIYFLT----LTKSAFHNQDALGI 61

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL---RISWLV 126
               + F  ++G+       I++     R  R + + D   +  D L+ H+    +  + 
Sbjct: 62  -RHINDFFLLDGVFNEHGKHIQITCSLQRGQRKVFMADK--KHYDRLSDHIGLFPVVLIA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSW 182
           P    +    S ERRRF D ++    P +    + + +++  RN LL       + D   
Sbjct: 119 PDDTDLIREGSEERRRFFDGVLGQAVPGYLTDFLQYNKILTQRNGLLKFFAERNHLDEDL 178

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             +    +  L  +I+  R   +     L  ++ +  +  H K+ +              
Sbjct: 179 LETYNEPLIVLSQRIHQHRAAFMEKFVPLFYKFYEFLSSGHEKVDVI--------YESEV 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +  ++  +    R  D  ++RT  G H+ + + +  D       GS G+QK  L+ + LA
Sbjct: 231 VSPDFPAEFRRNRSRDLHAQRTGKGIHKDEYVFE-IDGVTLKKFGSQGQQKSFLIALKLA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMT 348
              L+    G  PILLLD+I   LD+ + + L  ++ T   +Q+F+T
Sbjct: 290 QFELLKEEKGKTPILLLDDIFDKLDDRRIHKLIELIDTGFLAQVFIT 336


>gi|165975460|ref|YP_001651053.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|226737765|sp|B0BRG1|RECF_ACTPJ RecName: Full=DNA replication and repair protein recF
 gi|165875561|gb|ABY68609.1| DNA replication and repair protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 360

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 155/355 (43%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +    +
Sbjct: 6   LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    AR++  EG    S+ ++ +       L+IN      + +L   L +  + P  
Sbjct: 66  EDFV-LHARID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186
             + +G    RR FLD  +F           + +RL++ RN  L +   Y +   W    
Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++A+L   ++  R     AL   I +  Q    P +++ ++      F Q +     +
Sbjct: 178 DIELAKLAEIVSQMRASYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGTD 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305
           YA+ L  G + D     T+IGP ++D    +    + +    S G+ K+++  + LA   
Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQGE 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   D LN+
Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339


>gi|325926217|ref|ZP_08187575.1| DNA replication and repair protein RecF [Xanthomonas perforans
           91-118]
 gi|325543399|gb|EGD14824.1| DNA replication and repair protein RecF [Xanthomonas perforans
           91-118]
          Length = 344

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 137/323 (42%), Gaps = 10/323 (3%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS 89
            +  GDNG GKT++LEA+  ++ GR FR      + + G+          EG     + +
Sbjct: 2   NLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGANDLEVFVEWKEGNGAAGERT 61

Query: 90  IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149
            +   R        +++   +  +  L   L +    P    + SG    RRRFLD  +F
Sbjct: 62  RRAGLRHSGQEWTGRLDGEDVAQLGALCAALAVVTFEPGSHVLISGGGEPRRRFLDWGLF 121

Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209
            ++P        + R ++ RN LL +G        + + ++AE G  +   R   +  L 
Sbjct: 122 HVEPDFLTMWRRYARALKQRNALLKQGA-QPRMLDAWDHELAESGESLTSRRTRYLERLQ 180

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
             ++  V     P + LS   F  G + +   +L    A  L   R+ D  +  T  GPH
Sbjct: 181 ERLVP-VADAIAPSLGLSALTFAPG-WKRHEVSL----ADALLLARERDRQNGYTSQGPH 234

Query: 270 RSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           R+D +  +  +A+      S G+ K+  +   LA A   +   G  P++ LD++ + LD 
Sbjct: 235 RADWVPSF--QALPGRDALSRGQAKLSALACLLAQAEDFAYERGEWPVIALDDLGSELDR 292

Query: 329 DKRNALFRIVTDIGSQIFMTGTD 351
             +  + + +    +Q+ +T T+
Sbjct: 293 HHQGRVLQRLASAPAQVLITATE 315


>gi|289662281|ref|ZP_06483862.1| recombination protein F [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 368

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 144/344 (41%), Gaps = 12/344 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I   R + ++ L   +   +  G+NG GKT++LEA+  ++ GR FR      + + G+
Sbjct: 6   LSIHRLRRFQTVELHPASALNLLTGNNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65

Query: 70  PSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
                F  +    G+ G       L          L   DV    +  L   L +    P
Sbjct: 66  NDLEVFVEWKEGSGVAGERTRRAGLRHSGQEWTGRLDGEDVA--QLGSLCAALAVVTFEP 123

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
               + SG    RRRFLD  +F ++P        + R ++ RN LL +G        + +
Sbjct: 124 GSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQGA-QPRMLEAWD 182

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            ++AE G  +   R+  +  L   ++  V     P + LS   F  G + +   +L    
Sbjct: 183 HELAESGETLTSRRMRYLERLQDRLIP-VAGAIAPSLGLSALAFAPG-WKRHEVSL---- 236

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
           A  L   R+ D  +  T  GPHR+D +  + D        S G+ K+  +   LA A   
Sbjct: 237 ADALLLARERDRQNGYTSQGPHRADWMPRF-DVLPGKDALSRGQAKLTALACLLAQAEDF 295

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           +   G  P++ LD++ + LD   +  + + +    +Q+ +T T+
Sbjct: 296 AFERGEWPVIALDDLGSELDRHHQARVLQRLVSAPAQVLITATE 339


>gi|289667647|ref|ZP_06488722.1| recombination protein F [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 368

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 144/344 (41%), Gaps = 12/344 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I   R + ++ L   +   +  G+NG GKT++LEA+  ++ GR FR      + + G+
Sbjct: 6   LSIHRLRRFQTVELHPASALNLLTGNNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65

Query: 70  PSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
                F  +    G+ G       L          L   DV    +  L   L +    P
Sbjct: 66  NDLEVFVEWKEGSGVAGERTRRAGLRHSGQEWTGRLDGEDVA--QLGSLCAALAVVTFEP 123

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
               + SG    RRRFLD  +F ++P        + R ++ RN LL +G        + +
Sbjct: 124 GSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQGA-QPRMLDAWD 182

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            ++AE G  +   R+  +  L   ++  V     P + LS   F  G + +   +L    
Sbjct: 183 HELAESGETLTSRRMRYLERLQDRLIP-VAGAIAPSLGLSALAFAPG-WKRHEVSL---- 236

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
           A  L   R+ D  +  T  GPHR+D +  + D        S G+ K+  +   LA A   
Sbjct: 237 ADALLLARERDRQNGYTSQGPHRADWMPRF-DVLPGKDALSRGQAKLTALACLLAQAEDF 295

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           +   G  P++ LD++ + LD   +  + + +    +Q+ +T T+
Sbjct: 296 AFERGEWPVIALDDLGSELDRHHQARVLQRLVSAPAQVLITATE 339


>gi|187735102|ref|YP_001877214.1| DNA replication and repair protein RecF [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425154|gb|ACD04433.1| DNA replication and repair protein RecF [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 351

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 152/361 (42%), Gaps = 49/361 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L + +FR Y S       Q  I +G+N  GKT++LEA+ FL   +  R A    +  
Sbjct: 2   ISRLKLMDFRCYGSFSWQIPQQGAIILGNNARGKTSLLEAVCFLLRLQSPRTARTGPLVS 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRVVDELNKHLRISWL 125
            G  SF        G+ G     I+         R L   D   +RV  E  K  R S+L
Sbjct: 62  HGKQSF--------GIRGELPGQIR---------RILWAPDAPDLRVNGEPRKDQR-SYL 103

Query: 126 VPSMDRIFSG---LSM------ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
             S   ++ G   LS+       RR+++D +     P +R  +  + R ++ RN LL   
Sbjct: 104 ADSYPVVWMGNDDLSLVQAGADARRKYMDFLGSQWHPGYRLALFSYRRALKTRNYLLKHR 163

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
           + D     +   Q+A  G ++   R  ++  L+            PHI L+    + G+ 
Sbjct: 164 HRDKLQLDAYTRQLALHGTELRNLRANLLALLA------------PHIALAYRN-IGGRQ 210

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSR-----RTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +Q   A +      L++ R   SM R     +T  GPHR DL +    +       S G+
Sbjct: 211 EQVSIAYRASEEGDLYE-RLCASMDRDIRYGQTQNGPHRDDLDITLNGRN-AAQFASEGQ 268

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGT 350
           Q+   + + LA + L++  TG  PI L+D++   LD  +R A  + +  D  S I  T  
Sbjct: 269 QRTTAISMKLAQSSLLTEETGHTPIHLIDDVFGELDPTRRIAFLQSLPADAQSLITTTHL 328

Query: 351 D 351
           D
Sbjct: 329 D 329


>gi|307249202|ref|ZP_07531199.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858726|gb|EFM90785.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 360

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 155/355 (43%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +    +
Sbjct: 6   LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    AR++  EG    S+ ++ +       L+IN      + +L   L +  + P  
Sbjct: 66  EDFV-LHARID--EGQHQWSVGIQKKRSGDT-LLKINGEGGNKISDLAHLLPMQVITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186
             + +G    RR FLD  +F           + +RL++ RN  L +   Y +   W    
Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++A+L   ++  R     AL   I +  Q    P +++ ++      F Q +     +
Sbjct: 178 DTELAKLAEIVSQMRANYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGAD 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305
           YA+ L  G + D     T+IGP ++D    +    + +    S G+ K+++  + LA   
Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCVLRLAQGE 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   D LN+
Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339


>gi|227529859|ref|ZP_03959908.1| recombination protein F [Lactobacillus vaginalis ATCC 49540]
 gi|227350228|gb|EEJ40519.1| recombination protein F [Lactobacillus vaginalis ATCC 49540]
          Length = 374

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 151/361 (41%), Gaps = 21/361 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  FRNY  L + F     + +G N  GKTN+LEAI  LS  R  R  +  ++     
Sbjct: 6   LHLHNFRNYEDLTVHFAPGVNVLIGHNAQGKTNMLEAIYALSLTRSHRTHNNRELINWQH 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            S  +    V+   G   + ++  ++  R+    ++N +    +      L      P  
Sbjct: 66  KS-ATISGIVQKTSGRVPLELEFTSKGKRA----KVNHLEQARLSTYVGQLNAILFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSS 185
             +  G    RR F+D     +  ++      +  L+R RN+ L +  +    D      
Sbjct: 121 LSLVKGAPALRRHFMDMEFSQMSSKYLYNAGQYRTLLRQRNKYLKQLKYGQQHDKVLLGV 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +  Q+A  G ++ IAR + +  L     +  +K +    +L L      K ++    +++
Sbjct: 181 LSDQLAAYGAEVIIARYQFLQHLEKWASQLHEKISLNAEQLRLDYITQLKLNEE-TTVEQ 239

Query: 246 EYAK--KLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            Y     L+       + +  T+ GP R D+      K +  + GS G+Q+   + + LA
Sbjct: 240 AYQDLLGLYQSHVNWEIEKGTTMYGPQRDDIHFMVNGKNVQ-SFGSQGQQRTTALSVKLA 298

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              L+   TG  P+LLLD++ + LD  ++  L     D   Q F+T T      SLN+ A
Sbjct: 299 EIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAFQD-KVQTFLTTT------SLNDVA 351

Query: 363 K 363
           +
Sbjct: 352 R 352


>gi|261880338|ref|ZP_06006765.1| recombination protein F [Prevotella bergensis DSM 17361]
 gi|270333029|gb|EFA43815.1| recombination protein F [Prevotella bergensis DSM 17361]
          Length = 375

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 167/369 (45%), Gaps = 43/369 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-- 64
           +K ++I  ++N ++ +L F  +   F+G+NG GKTN+L+AI +LS    F  + + ++  
Sbjct: 3   LKNISIINYKNISAAQLAFSPKINCFIGNNGEGKTNLLDAIYYLS----FCHSCFTNIDG 58

Query: 65  -TRIGSPSFFSTFARVEGMEG-LADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLR 121
              +    FF          G + +I++ L+  R  R  R         +    L++H+ 
Sbjct: 59  QVLMHDKEFFVIDGEYVTDSGEIENINVGLKRGRGKRFSRNK-------KNYKRLSEHIG 111

Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGY 177
           +  L+   PS   + +G   ERR+ +D ++   D R+   +  + +  + RN LL  E  
Sbjct: 112 LIPLIFASPSDMTLVNGGGEERRKLMDIVIAQYDNRYIDALNAYNKAWQQRNALLKMEEE 171

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            D++     E +MAE G  +   R   +  L+ +  E  Q  +    K+SL     G+  
Sbjct: 172 PDNTLLDLWETEMAEQGEIVYRKRDSFVKELTPVFQEIYQYISGQQEKVSLRYVSHGQRG 231

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL---IVDYCDKAITIAHGSTGEQKV 294
                ++ +        R  D     +L G HR +L   I DY  K      GS G+ K 
Sbjct: 232 NLLEVIQRD--------RFKDRAVGYSLHGIHRDELEMLIGDYPMKR----EGSQGQIKT 279

Query: 295 VLVGIFLAH----ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTG 349
            ++ + LA      R  SNTT   P+LLLD+I   LD  +   + R+V+ D   QIF+T 
Sbjct: 280 YVLALKLAQFDFLRRTASNTT---PLLLLDDIFDKLDSQRVEQIVRLVSGDNFGQIFITD 336

Query: 350 TDKSVFDSL 358
           T++   D +
Sbjct: 337 TNRGHLDKI 345


>gi|188989399|ref|YP_001901409.1| recombination protein F [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167731159|emb|CAP49331.1| DNA replication and repair protein [Xanthomonas campestris pv.
           campestris]
          Length = 397

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 145/352 (41%), Gaps = 18/352 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++     +   +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 24  MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSFRGRVRDGL 83

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLR 121
            R G       F  VE  E   D + +      R        +++   +  +  L   L 
Sbjct: 84  IRQGGQD-LEIF--VEWRERAGDSTERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALA 140

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           +    P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G     
Sbjct: 141 VVTFEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQGA-QPQ 199

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
              + + ++AE G  +   R++ +  L   ++  V     P + LS   F  G       
Sbjct: 200 MLDAWDHELAESGETLTSRRLQYLERLQERLVP-VATAIAPSLGLSALTFAPGWRRHEVS 258

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGI 299
                 A  L   R+ D  +  T  GPHR+D   + D       +   S G+ K+  +  
Sbjct: 259 -----LADALLLARERDRQNGYTSQGPHRADWAPLFDALPGKDAL---SRGQAKLTALAC 310

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            LA A   ++  G  PI+ LD++ + LD   +  + + +    +Q+ +T T+
Sbjct: 311 LLAQAEDFAHERGEWPIMALDDLGSELDRHHQARVIQRLASAPAQVLITATE 362


>gi|54292967|ref|YP_125382.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str.
           Lens]
 gi|53752799|emb|CAH14233.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str.
           Lens]
          Length = 353

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 149/349 (42%), Gaps = 41/349 (11%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I  FRN AS  L+ +       G NG GKT++LEA+  LS    FR      +   G   
Sbjct: 8   IHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVTPIISYGQNQ 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             + FA        + IS++    D   ++   +N+       +L   L    +   + +
Sbjct: 68  -LNVFAHAYDE---STISVQKSITDGTQIK---LNNQFCCTTSQLAYALPCQVIYSDIFQ 120

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIE 187
           I       RR  LD  +F +   + +   D++R++  RN LL    T  +F   W    +
Sbjct: 121 IIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHF-IPW----D 175

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------FLDGKFDQSFC 241
            Q+++L  +++ AR       +   +++  K  F  +   LT       +  G   ++  
Sbjct: 176 QQLSQLANQLDKAR-------NDYFLQWQPK--FYQVLSDLTDISCTVEYYKGWDRKNAG 226

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIF 300
              EE  +K FD    D     T  GPH++DLI+    +   + H  S G+QK++L+ + 
Sbjct: 227 QNMEELLQKSFDS---DRNKLYTQYGPHQADLIIS--TEQYRVKHTLSRGQQKIILIALK 281

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           LA  +L+        + L+D+++A LD+  +  L + +  +  Q  +T 
Sbjct: 282 LAQGQLLDKDC----LYLIDDLAAELDDYHQRNLIKYLAQLKGQFVITN 326


>gi|147676338|ref|YP_001210553.1| recombination protein F [Pelotomaculum thermopropionicum SI]
 gi|189039631|sp|A5D6E6|RECF_PELTS RecName: Full=DNA replication and repair protein recF
 gi|146272435|dbj|BAF58184.1| recombinational DNA repair ATPase [Pelotomaculum thermopropionicum
           SI]
          Length = 364

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 163/382 (42%), Gaps = 37/382 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  FRN+A   +       +  G N  GKTNILE+I     GR FR A   ++  
Sbjct: 3   LRRLEMLNFRNFARQAVEPGLYFNVLSGRNAQGKTNILESIYLACTGRSFRTAREKEL-- 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR----I 122
           I     FS+            I    ETR  R V  +++  V  R   E+N  L+     
Sbjct: 61  IKREKEFSS------------IRCLFETR-GREVE-VKVTLVPGRKRIEVNGVLKSGHPF 106

Query: 123 SW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
            W       P    +  G   ERRRFLD  +    P +   +  + R++  RN LL E  
Sbjct: 107 GWPGVVLFTPDDLVMIKGSPAERRRFLDYDLGPFHPHYAHCLDRYNRVLSQRNALLREAK 166

Query: 178 FDSSWCSSIEA---QMAELGVKINIARVEMIN----ALSSLIMEYVQKENFPHIKLSLTG 230
              +    +E    Q+   G ++   RV ++     A+ +L  E    E   +I++S   
Sbjct: 167 EKRTTGGPLEVWDEQLCRYGSRLLFLRVSLLKKFFPAIRALHRELT--EGAENIEISYLS 224

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            L    +     + E ++ +L   R  +    +TL+GPHR DL +   D      + S G
Sbjct: 225 SLKIGEECGEDEIYERFSGELRLVRDEEIARMQTLVGPHRDDLHIK-VDGHDARVYCSQG 283

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+ +++ + +       + TG  PILLLD++   LD+++R AL   +  +  Q F+T T
Sbjct: 284 QQRTIVLTLKVFLIEQWRSETGEYPILLLDDVLFELDDNRREALMCRLGGL-VQTFLTCT 342

Query: 351 DKSVFDSLNETAKFMRISNHQA 372
            +  FD     AK   +S  + 
Sbjct: 343 -RVNFDIEGFKAKVFTVSGGEV 363


>gi|323496929|ref|ZP_08101957.1| recombination protein F [Vibrio sinaloensis DSM 21326]
 gi|323318003|gb|EGA70986.1| recombination protein F [Vibrio sinaloensis DSM 21326]
          Length = 360

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 153/365 (41%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +   
Sbjct: 6   LIIKQFRNIEACDINLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNDC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + +  L + L +  + P
Sbjct: 66  NELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAHLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW--CSS 185
               + +     RR F+D  VF  +         F+RL + RN LL      SS+   S 
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTA---SSYRELSY 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + +MA L   I+  R   +  + S   E  Q    P   + L  +     D  +  + E
Sbjct: 178 WDQEMARLAENISQWRSIYVEQMKSKAEEICQT-FLPEFDIQLKYYRGWDKDTPYQQILE 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           +  ++       D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 237 KNFER-------DQSLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  T   V D  +E  K 
Sbjct: 289 HLTEMTGKQCIYLIDDFASELDSQRRERLAECLKETGAQVFVSSITQSQVADMADENGKM 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|294101018|ref|YP_003552876.1| DNA replication and repair protein RecF [Aminobacterium colombiense
           DSM 12261]
 gi|293615998|gb|ADE56152.1| DNA replication and repair protein RecF [Aminobacterium colombiense
           DSM 12261]
          Length = 339

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 148/348 (42%), Gaps = 46/348 (13%)

Query: 22  RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEG 81
           RL + A   + VG+NG GKTN LEAI  LS G G  R+S          SF   +   E 
Sbjct: 5   RLEWAAGLNLLVGNNGSGKTNALEAIHILS-GWGPFRSSRK--------SFLVNWDTEEK 55

Query: 82  MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN---------KHLRISWLVPSMD-- 130
              L            R     + N  ++  V E N          H  +  L+P++   
Sbjct: 56  QAYL------------RGYFSGETNLDIVATVGEKNIIQCDGKRITHGNVRSLIPALAFL 103

Query: 131 ----RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
                I  G    RR+FLDR+   + P + R+M D  R +R R  LL E   D S  S +
Sbjct: 104 PGDLAIVDGAPSVRRQFLDRLCALLFPLYVRKMSDCRRALRHRVILLRE-RKDPSLTSKV 162

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
              +A L   I   R   ++ L   I E+  +   P   + LT    G  D       ++
Sbjct: 163 ---LAPLVSWIWSTRAAAVDLLKIGIQEF--RILLPS-DIVLTFERGGALD--LQDPMQD 214

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           Y + +   R+ + ++    +GP R D+I+    ++++I   S G+++   V + LA    
Sbjct: 215 YWESVRKWREKEHITGVPQVGPQRDDMIITTKGQSVSIVM-SRGQRRRTAVALMLAAGWA 273

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           +       P+L+LDEI+A LD+  RN L   + +   Q+F    + S+
Sbjct: 274 VERKLRRKPLLILDEIAAELDDRGRNILIDALVESSWQVFAATAESSM 321


>gi|293376414|ref|ZP_06622648.1| DNA replication and repair protein RecF [Turicibacter sanguinis
           PC909]
 gi|325839307|ref|ZP_08166773.1| DNA replication and repair protein RecF [Turicibacter sp. HGF1]
 gi|292644970|gb|EFF63046.1| DNA replication and repair protein RecF [Turicibacter sanguinis
           PC909]
 gi|325490589|gb|EGC92904.1| DNA replication and repair protein RecF [Turicibacter sp. HGF1]
          Length = 377

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 171/381 (44%), Gaps = 42/381 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L + +FRNY +  + F     I +G+N  GKT+++E++  LS  +  R +  + +  
Sbjct: 3   IKKLVVKQFRNYENACVEFKKNINIIIGNNAQGKTSLIESMYVLSTTKSHRTSKDSQLIL 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIRVVDELNK 118
            G+      FAR+E     ADI      +DD S+  +          N +V + + +   
Sbjct: 63  FGTD-----FARIE-----ADIK---REQDDFSLSLVLSKKGKKASYNGIVQKKLSDYVG 109

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            L +    P    +  G    RRRF+D  +  + P +   +  + +L++ RN LL +   
Sbjct: 110 KLIVVMFAPEDLSLVKGGPQYRRRFMDMEIGQLSPSYLFHLGQYSKLLKQRNELLKQLRI 169

Query: 179 DSS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFPHIKLS-LT 229
           +         I  Q+    V +   R+E +  L S   +       QKE    I+L  + 
Sbjct: 170 NRQNELLLDVITEQLVPHAVYVLNKRIEFLKQLESFCKDVHGEISKQKE---EIQLDYIN 226

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
            F + + D+   ++ ++Y ++L+D    D     T +GPHR D  V   +   T   GS 
Sbjct: 227 SFKNIELDEE--SILQKY-RELYD---QDIQLGSTNLGPHRDDFSVS-INGINTHQFGSQ 279

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q+   + + LA   LI +     PILLLD++ + LD+ ++  L   + +   Q F+T 
Sbjct: 280 GQQRTASLSMKLAEIELIYSVLHEYPILLLDDVLSELDDTRQTQLLNTIKN-KVQTFITT 338

Query: 350 TD-KSVFDSLNETAKFMRISN 369
           T+   + D + E A    I+N
Sbjct: 339 TNIDGIDDEVIELADIFTINN 359


>gi|270158400|ref|ZP_06187057.1| DNA replication and repair protein RecF [Legionella longbeachae
           D-4968]
 gi|289163356|ref|YP_003453494.1| RecF recombinational DNA repair ATPase [Legionella longbeachae
           NSW150]
 gi|269990425|gb|EEZ96679.1| DNA replication and repair protein RecF [Legionella longbeachae
           D-4968]
 gi|288856529|emb|CBJ10324.1| RecF recombinational DNA repair ATPase [Legionella longbeachae
           NSW150]
          Length = 356

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 149/360 (41%), Gaps = 46/360 (12%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I + RN  S  L  + +     G NG GKT++LEA   LS G  FR    A +     
Sbjct: 6   LKIHQLRNIISAHLELNPRFNFIFGSNGSGKTSVLEAFYLLSCGHSFRTREIAPIISHNQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           PS  + FAR    E    ISI+        V+   +N+       +L   L        +
Sbjct: 66  PS-MTVFARGRNQE---TISIQKSYSGATQVK---LNNQFCSTTSQLAYALPCQVFYSDL 118

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            +I       RR  LD  +F +   +     +++R+++ RN LL +    + +    + Q
Sbjct: 119 FQIIDAGPSVRRNLLDWGLFHVKHNYFNLWKEYKRVLKQRNALLKKRAPFTHYI-PWDKQ 177

Query: 190 MAELGVKINIARV--------EMINALSSL-----IMEYVQKENFPHIKLSLTGFLDGKF 236
           + +L  ++++ R         E I+ LS L      ++Y +  +  ++  SL   L   F
Sbjct: 178 LDQLANQLHLLREEYFIQWEREFISVLSELSELGCTLKYYKGWDKKNLGKSLEEVLAENF 237

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           D                    D     T  G H++D I++  D        S G+QK++L
Sbjct: 238 DS-------------------DCHKLYTQHGAHQADFIIE-VDNNKVKHFISRGQQKIIL 277

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDE-DKRNALFRIVTDIGSQIFMTGTDKSVF 355
           + + LA A L+S       + L+D+++A LDE  +R  +  + T  G  I  + ++ +V 
Sbjct: 278 IALKLAQANLVSEDC----LYLMDDLAAELDEAHQRRIMSHLFTRNGQYIITSTSNSNVL 333


>gi|291297364|ref|YP_003508762.1| DNA replication and repair protein RecF [Meiothermus ruber DSM
           1279]
 gi|290472323|gb|ADD29742.1| DNA replication and repair protein RecF [Meiothermus ruber DSM
           1279]
          Length = 357

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 150/350 (42%), Gaps = 33/350 (9%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN  +         T  VG N  GKTN+LEAI  L+ G G  R   A+    G    + 
Sbjct: 11  FRNLFTPVFAPGPGLTTVVGGNAQGKTNLLEAIE-LALG-GELRNGLAERIAFGQGEAW- 67

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A +E   G + + +KL +R+ R  R   +N+     + EL +      L P    +  
Sbjct: 68  LHAEIETQFGNSRLEVKL-SREGREHR---LNEAPA-SLRELAQLPGAVLLGPDDLELVL 122

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS------WCSSIEA 188
           G   ERRRFLD ++     R+R  +  + R ++ RN +L  G+  +S        SS  A
Sbjct: 123 GPPEERRRFLDVLLSRFSARYRSMLSQYNRALQQRNAVLKSGFRPTSRGQGEGAPSSTRA 182

Query: 189 -------QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                  ++ + G +I   R  M+  L+ L  E  ++     + L L+   D        
Sbjct: 183 SIGIWNHELVKYGSEILSLRRRMLAKLTPLAREAYRELAPGELNLELSETTD-------- 234

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
              + + + L D  + D     T +GPHR DL++   +       GS GE + + + + L
Sbjct: 235 --PDRFLQTLEDNLQDDLQRGATSVGPHRDDLVI-LLEGREAARFGSRGECRSIALALRL 291

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           A  RL+      AP+LL+DE  + LD  +R AL      +  Q  + G +
Sbjct: 292 AEHRLLWQHYEEAPLLLVDEWHSELDNRRRGALLAYAQSL-PQAILAGLE 340


>gi|67925054|ref|ZP_00518434.1| RecF protein [Crocosphaera watsonii WH 8501]
 gi|67853101|gb|EAM48480.1| RecF protein [Crocosphaera watsonii WH 8501]
          Length = 380

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 175/373 (46%), Gaps = 36/373 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++  FRNY    L F++Q TI +G+N  GK+N+LEA+  L+  +  R     D+  
Sbjct: 3   LKNIHLYAFRNYHEQTLNFESQKTILLGNNAQGKSNLLEAVELLATLKSHRTNRDRDLIL 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G          VE   G + + I   +   RS   L +N       + L +HL     +
Sbjct: 63  EGEKK-GQILGTVERNYGESQMGITFRSPGRRS---LMLNH------ENLRRHLEFLGHI 112

Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----- 173
            +++  FS L +E        RR +LD ++  ++P +   +  + +++R RN LL     
Sbjct: 113 NAVE--FSCLDLELVRGSPETRRSWLDTLLIQLEPVYASIINQYNKVLRQRNALLKVIRK 170

Query: 174 -TEGYFDSSWCSS-------IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
             E   ++   S+        + Q+AE G ++   R  +I  +S L   + ++ +    K
Sbjct: 171 TVEEQTNTDNLSAEMSQLKLWDQQLAEAGTRVTRRRNRVIERISPLAENWHKEISNGTEK 230

Query: 226 LSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
           L +    +   D +    +++ +  K+   R  +     +++GPHR D+ +   +     
Sbjct: 231 LEINYLPNISIDREEPQEVQQAFLDKIEQRRMAEQQLATSVVGPHRDDVELK-INHTPAK 289

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
           ++GS G+Q+ +++ I LA  +LI +  G  P+LLLD++ A LD +++N L  ++     Q
Sbjct: 290 SYGSQGQQRTLVLAIKLAELQLIEDVIGEPPLLLLDDVLAELDPNRQNQLLEVIQG-RFQ 348

Query: 345 IFMTGTDKSVFDS 357
             +T T    FD+
Sbjct: 349 TIITTTYLHSFDT 361


>gi|160890975|ref|ZP_02071978.1| hypothetical protein BACUNI_03420 [Bacteroides uniformis ATCC 8492]
 gi|270294288|ref|ZP_06200490.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156859196|gb|EDO52627.1| hypothetical protein BACUNI_03420 [Bacteroides uniformis ATCC 8492]
 gi|270275755|gb|EFA21615.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 370

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 154/356 (43%), Gaps = 18/356 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F  +   F G NG+GKTN+L+A+ FLS  +     +  D   
Sbjct: 3   LKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAVYFLSFCKS--AGNPIDSQN 60

Query: 67  IGSPS-FFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           I   + FF      E  +G  + I   ++ R  +  +  +      R+ D +   L +  
Sbjct: 61  ICHDADFFVIQGFYEAADGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVM 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183
           + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +    
Sbjct: 118 VSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEELF 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E  MA+ G  +   R   I     +   +    +    K+ L+     +       L
Sbjct: 178 LVWEEMMAQAGEVVFRKREAFIREFIPIFQSFYSFISQDREKVGLSYDSHARDASLLEVL 237

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE  A+        D +   +L G H+ +L +   D  I    GS G+ K  LV + LA 
Sbjct: 238 KESRAR--------DQIMGYSLRGVHKDELNMLLGDFPIK-REGSQGQNKTYLVALKLAQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358
              +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +
Sbjct: 289 FDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDSFGQIFITDTNREHLDRI 344


>gi|257464818|ref|ZP_05629189.1| recombination protein F [Actinobacillus minor 202]
 gi|257450478|gb|EEV24521.1| recombination protein F [Actinobacillus minor 202]
          Length = 361

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 161/365 (44%), Gaps = 27/365 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRN  ++ L    Q    +G NG GKT++LE+I +L  GR F ++  ++      
Sbjct: 6   LIVQNFRNLQAVDLTLSPQFNFIIGANGSGKTSLLESIFYLGHGRSF-KSHISNRIIHHD 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              F    ++E  +    + I+ +   + +   L+IN      + +L + L +  + P  
Sbjct: 65  ADHFVLHGKIEEAQHSWSVGIQKQRSGETT---LKINGEDGNKIADLAQLLPMQVITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186
             + +     RR FLD  +F          ++ +RL++ RN  L +   YF+  +W    
Sbjct: 122 LTLLNDGPSYRRAFLDWGLFHQHAEFYSDWVNLKRLLKQRNAALHQVRSYFELKAW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++A+L  K++  R   + A+   I +   +   P + + ++ F  G           +
Sbjct: 178 DIELAKLAEKVSQMRAAYVEAILPEI-DKTCRFFLPELDIQIS-FYQG------WEKGAD 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L  G + D     T++GP ++DL +      +     S G+ K+++  + LA    
Sbjct: 230 YADILAQGFERDQNLGYTMMGPQKADLRIKANGLPVEDVL-SRGQLKLLMCALRLAQGEF 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +        + L+D+ ++ LD  KR  L + + +  SQ+F+T   K   + LN+    M+
Sbjct: 289 LMTQKARQCLFLVDDFASELDPTKRELLSQRLRESHSQVFVTAITK---EQLNQ----MQ 341

Query: 367 ISNHQ 371
              HQ
Sbjct: 342 WQEHQ 346


>gi|329962146|ref|ZP_08300157.1| DNA replication and repair protein RecF [Bacteroides fluxus YIT
           12057]
 gi|328530794|gb|EGF57652.1| DNA replication and repair protein RecF [Bacteroides fluxus YIT
           12057]
          Length = 369

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 152/357 (42%), Gaps = 20/357 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F  +   F G NG+GKTN+L+A+ FLS  +       +   R
Sbjct: 3   LKRISILNYKNLEQVELTFSPKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                FF      E  +G  + I   ++ R  +  +  +      R+ D +   L +  +
Sbjct: 63  -HEADFFVIQGFYEASDGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVMV 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184
            P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +     
Sbjct: 119 SPADSELIAGGSEERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEELFL 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCA 242
             E  MA+ G  +   R   I     +   +     ++   + LS         D S   
Sbjct: 179 VWEEMMAQAGEVVFRKREAFIQEFIPIFQSFYSFISQDKEQVGLSYDSHAR---DTSLLE 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           + +E        R  D +   +L G H+ +L +   D  I    GS G+ K  L+ + LA
Sbjct: 236 VLKE-------SRVRDRIMGYSLRGVHKDELNMLLGDFPIK-REGSQGQNKTYLIALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358
               +  T    P+LLLD+I   LD  +   + ++V   G  QIF+T T++   D +
Sbjct: 288 QFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIIKLVASDGFGQIFITDTNREHLDRI 344


>gi|303250482|ref|ZP_07336679.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251524|ref|ZP_07533431.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307256024|ref|ZP_07537812.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|302650470|gb|EFL80629.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860988|gb|EFM92994.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306865446|gb|EFM97341.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 360

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 154/355 (43%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +    S
Sbjct: 6   LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIINYQS 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     R++  EG    S+ ++ +       L+IN      + +L   L +  + P  
Sbjct: 66  EDFV-LHGRID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186
             + +G    RR FLD  +F           + +RL++ RN  L +   Y +   W    
Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSYWANLKRLLKQRNAALHQVRSYAELKPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++A+L   ++  R     AL   I +  Q    P +++ ++      F Q +     +
Sbjct: 178 DTELAKLAEIVSQMRANYAEALRPEIEKTCQF-FLPELEIGVS------FHQGWEK-GAD 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305
           YA+ L  G + D     T+IGP ++D    +    + +    S G+ K+++  + LA   
Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCVLRLAQGE 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   D LN+
Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339


>gi|240950077|ref|ZP_04754379.1| recombination protein F [Actinobacillus minor NM305]
 gi|240295452|gb|EER46207.1| recombination protein F [Actinobacillus minor NM305]
          Length = 361

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/370 (22%), Positives = 160/370 (43%), Gaps = 35/370 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FRN  ++ L    Q    +G NG GKT++LE+I +L  GR F ++  ++      
Sbjct: 6   LIVQNFRNLQAVDLTLSPQFNFIIGANGSGKTSLLESIFYLGHGRSF-KSHISNRIIHHD 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              F    ++E  +    + I+ +   + +   L+IN      + +L + L +  + P  
Sbjct: 65  ADHFVLHGKIEETQHSWSVGIQKQRSGETT---LKINGEDGNKIADLAQLLPMQVITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186
             + +     RR FLD  +F          ++ +RL++ RN  L +   YF+  +W    
Sbjct: 122 LTLLNDGPSYRRAFLDWGLFHQHTEFYNDWVNLKRLLKQRNAALHQVRSYFELKAW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL-DGKFDQSFCALKE 245
           + ++ +L  K++  R   + A+             P I  +   FL + +   SF    E
Sbjct: 178 DIELVKLAEKVSQMRAAYVEAI------------LPEIDKTCRFFLPELEIQMSFYQGWE 225

Query: 246 ---EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
              +YA  L  G + D     T++GP ++DL +      +     S G+ K+++  + LA
Sbjct: 226 RGADYADILAQGFERDQSLGYTMMGPQKADLRIKANGLPVEDVL-SRGQLKLLMCALRLA 284

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
               +        + L+D+ ++ LD  KR  L + + +  SQ+F+T   K   + LN+  
Sbjct: 285 QGEFLMTQKARQCLFLVDDFASELDPTKRELLSQRLRESHSQVFVTAITK---EQLNQ-- 339

Query: 363 KFMRISNHQA 372
             M+   HQ 
Sbjct: 340 --MQWQEHQT 347


>gi|261338544|ref|ZP_05966428.1| RecF protein [Bifidobacterium gallicum DSM 20093]
 gi|270276565|gb|EFA22419.1| RecF protein [Bifidobacterium gallicum DSM 20093]
          Length = 381

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 155/366 (42%), Gaps = 38/366 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  FR++  + L F +  T+  G NG+GKTN++EAI  LS G   R +S   +
Sbjct: 1   MRITRLALDHFRSWNEVVLDFPSGITMLQGHNGLGKTNLVEAIEVLSTGSSHRTSSSLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-----CLQINDVVIRVVDELNKH 119
            + G  +  +  A V+  +  A     +  +     R      L + D+V +V       
Sbjct: 61  VQRGQQT-ATIRANVQHQDRTATYEATIRAKGANRARINSGSSLYLRDIVGQVPSVT--- 116

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL------ 173
                  P   R+ SG    RRRFLD+    +   + + + D + + R R  LL      
Sbjct: 117 -----FSPDDQRLVSGDPSARRRFLDQAGSQLVAGYAQLLQDVQHVGRQRAALLKSLGQH 171

Query: 174 ---TEGYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
               +    ++  +S+E    Q    GV +  AR +++  L+        +   P  +  
Sbjct: 172 GEPVDTVSRNAALASLEVWTGQFISAGVALTRARQQLVQRLAEPFSLVYSQLAGPAEQAR 231

Query: 228 LT---GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
           LT    F +   D    A    + ++L+ G     ++   LIGP R DL V         
Sbjct: 232 LTYEPSFDEVLTDADPAAALSRHFQRLYAGETSRGVN---LIGPQRDDLSVQLNGMD--- 285

Query: 285 AH--GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           AH   S GE   + + + +A  RL++    + P+++LD++ A LDE +R  +     +  
Sbjct: 286 AHEFASNGEMWAISLALKMALTRLLAEYHAYNPVVILDDVFAQLDESRRGQILSFAAE-Q 344

Query: 343 SQIFMT 348
            Q+ MT
Sbjct: 345 DQVIMT 350


>gi|325851995|ref|ZP_08171078.1| DNA replication and repair protein RecF [Prevotella denticola CRIS
           18C-A]
 gi|325484551|gb|EGC87467.1| DNA replication and repair protein RecF [Prevotella denticola CRIS
           18C-A]
          Length = 368

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 159/382 (41%), Gaps = 53/382 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N  +  L    +   F+G NG GKTN+L+A+ +LS  +       ++V
Sbjct: 1   MQLDRLSIINYKNIQTATLNLSGKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDE 115
            R  +  F         +EG        +T +   V C          + N    R + +
Sbjct: 61  MRHDADFFV--------LEG----DYTTDTGEQEQVYCGMKRGAKKHFKRNKKEYRRLSQ 108

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174
               L + ++ P+   +  G S ERRR +D ++   D  +   +  + + ++ RN LL  
Sbjct: 109 HIGRLPLIFVSPADATLIEGGSEERRRLMDVVISQYDTPYIESLGRYNKALQQRNSLLKQ 168

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           E   D +    +E QMAE G  +   R   +  L+       Q  +    ++SL      
Sbjct: 169 EEEPDPTLMELLEMQMAEHGEAVYRKRAAFVQELTPCFRRIYQTISNNREQVSL------ 222

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIA 285
                      EY      G  +D + R          +L G H+ DL++      +   
Sbjct: 223 -----------EYVSHCQRGSLLDIIQRDRVKDRIMGFSLHGTHKDDLMMKLGGYPMK-R 270

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVT--DIG 342
            GS G+ K  ++ + LA    +  T G   P+LLLD+I   LD  +   + R+V+  D G
Sbjct: 271 EGSQGQNKTYVLALKLAQFDFLRRTAGGRTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFG 330

Query: 343 SQIFMTGTDKSVFDSLNETAKF 364
            QIF+T T++   D + + + F
Sbjct: 331 -QIFITDTNREHLDKILQGSGF 351


>gi|89092266|ref|ZP_01165220.1| DNA replication and repair protein RecF [Oceanospirillum sp. MED92]
 gi|89083354|gb|EAR62572.1| DNA replication and repair protein RecF [Oceanospirillum sp. MED92]
          Length = 363

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 156/362 (43%), Gaps = 28/362 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I   RN +S+     +   I  G+NG GKT+ILEAI+ L   R FR      +
Sbjct: 1   MSISNLQIKNLRNISSISFAPSSAINIICGENGSGKTSILEAINVLGLTRSFRTNKARHL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123
            +    S    FA ++ M      S+ +E   +   R   +  D+ +  + EL     I 
Sbjct: 61  VQTEQASTV-VFASIDPMAQGFKQSLGVERPVEGEARIRFEGGDIDLSTLAEL-----IP 114

Query: 124 WLVPSMDR--IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
             V + D   +  G    RR+FLD  VF  D    +    F R+++ RN LL        
Sbjct: 115 LQVINSDTFMLLEGSPAVRRQFLDWGVFHADKAFIQLWRGFRRVLKQRNTLLK------- 167

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQS 239
            C  I+ Q+ ++  +  IA     + L+ L +EY++  K  F  +   L G +D +   S
Sbjct: 168 -CGKIDNQLRQVWDREFIA---FSDQLTRLRIEYLKLLKPEFDKVVSQLLGDMDVQLGFS 223

Query: 240 F-CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGSTGEQKVVL 296
           +    K +  + L    + D     T  GP R+D  L VD  + A  +   S G++K+V+
Sbjct: 224 YGWDKKRQLDEVLASNFERDLRQGFTGSGPQRADIKLKVDGHNAAERL---SRGQKKLVV 280

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
             + LA   L     G   I L+D++ + LD        +++    +Q F+T  D S  +
Sbjct: 281 SALKLAQGALFQRMNGRPCIYLIDDLPSELDSAHGELFCKVLEQSSNQCFITCVDDSSLN 340

Query: 357 SL 358
           + 
Sbjct: 341 AF 342


>gi|303233458|ref|ZP_07320126.1| DNA replication and repair protein RecF [Atopobium vaginae
           PB189-T1-4]
 gi|302480466|gb|EFL43558.1| DNA replication and repair protein RecF [Atopobium vaginae
           PB189-T1-4]
          Length = 428

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 156/390 (40%), Gaps = 57/390 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  ++N AS  L F    TI  G N  GKTNI+EAI   + G  F+    A    
Sbjct: 31  LQQLQLYNWKNIASATLEFSPAATILYGPNAAGKTNIIEAIHQCTTGVSFKHTPAAACIS 90

Query: 67  IGSPSFFSTFARVEG---------MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
            G+    +T   ++          +E    I+        R+ R L  N    R    L+
Sbjct: 91  QGTSQCSATATLIDAARTITLACKVEAPTPIASTENVPTQRAKRTLFANGKPARPYT-LS 149

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
            +       P   +     +  RR   D     I   ++     +   +  RN LL +G 
Sbjct: 150 AYAPSIVFTPDDLQCIKQSAKARRDEFDMFAKTITREYQHIYTTYTHCIEQRNTLLKQGI 209

Query: 178 FD---SSWCSSIEAQMAELGVKINIARVEMINALSSLIM---------EYVQKENFP--- 222
                ++W  S     A L      AR+ ++  L + I          E +  +  P   
Sbjct: 210 SPDVRAAWDESFMRGAAALMY----ARMRLLERLYTHITDVYRTIAPSETLTYQYMPSWL 265

Query: 223 ----HI-----KLSLTGFLDGKFDQS------FCALKEEYAKKLFDGRKMDSMSRRTLIG 267
               H+     KL+   FL G+          F  L+ +        + +++   +TL+G
Sbjct: 266 RLPAHVAPTISKLACAPFLPGQTPTKDELYTLFSTLQPQV-------QNLEAQRMQTLLG 318

Query: 268 PHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           P R D+   ++  D A T A  S G+Q+ +++ I +A   L     GF PILLLD++ + 
Sbjct: 319 PQRDDVQFFINGMD-ARTCA--SQGQQRSIILAIKIAQVLLTHEIHGFYPILLLDDVMSE 375

Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           LDE +RN +F ++ + G Q  +T T+   F
Sbjct: 376 LDELRRNTIFSLIHN-GIQAIITTTNLGYF 404


>gi|307260453|ref|ZP_07542148.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869856|gb|EFN01638.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 367

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 155/355 (43%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I+ FRN  SL L         VG NG GKT++LEA+ +L  GR F+      +    +
Sbjct: 13  LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAVFYLGHGRSFKSHISNRIIHYQA 72

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    AR++  EG    S+ ++ +       L+IN      + +L   L +  + P  
Sbjct: 73  EDFV-LHARID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 128

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186
             + +G    RR FLD  +F           + +RL++ RN  L +   Y +   W    
Sbjct: 129 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 184

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++A+L   ++  R     AL   I +  Q    P +++ ++      F Q +     +
Sbjct: 185 DIELAKLAEIVSQMRASYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGTD 236

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305
           YA+ L  G + D     T+IGP ++D    +    + +    S G+ K+++  + LA   
Sbjct: 237 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQGE 294

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   D LN+
Sbjct: 295 YLVAQKERQCLFLIDDFASELDPIKRELLAYRLRESGSQVFVTAITK---DQLNQ 346


>gi|303251824|ref|ZP_07337995.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307249126|ref|ZP_07531133.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302649254|gb|EFL79439.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306854414|gb|EFM86610.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 360

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 154/355 (43%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +    S
Sbjct: 6   LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIINYQS 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     R++  EG    S+ ++ +       L+IN      + +L   L +  + P  
Sbjct: 66  EDFV-LHGRID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186
             + +G    RR FLD  +F           + +RL++ RN  L +   Y +   W    
Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++A+L   ++  R     AL   I +  Q    P +++ ++      F Q +     +
Sbjct: 178 DTELAKLAEIVSQMRANYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGAD 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305
           YA+ L  G + D     T+IGP ++D    +    + +    S G+ K+++  + LA   
Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCVLRLAQGE 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   D LN+
Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339


>gi|15603024|ref|NP_246096.1| recombination protein F [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13959473|sp|Q9CLQ6|RECF_PASMU RecName: Full=DNA replication and repair protein recF
 gi|12721507|gb|AAK03243.1| RecF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 358

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 155/356 (43%), Gaps = 16/356 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I  FRN  ++ L FD      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLIENFRNLTAVDLEFDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                P F    A+++  E     S+ L+  R   SV  ++IN      + +L   L + 
Sbjct: 61  ISYEQPHFI-LHAKIQ--EQAHQWSVGLQKLRQGNSV--VKINGEDGNKIADLAHLLPMQ 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +G  + RR FLD  +F          ++  RL++ RN  L +     +  
Sbjct: 116 LITPEGLTLLNGGPVYRRAFLDWGLFHHHNHFHLAWVNLNRLLKQRNAALQQATHYQA-L 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + ++ +L  +++  R +   AL   I E   +   P +++S++      F Q +   
Sbjct: 175 EIWDRELVKLAHQVSEWRAQYAEALRPEI-EQTCRLFLPELEISVS------FHQGW-EK 226

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +YA  L    + D     T+ GP ++D         +     S G+ K+++  + LA 
Sbjct: 227 DSDYADLLVRHFERDRAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQ 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
              +        I L+D+ ++ LD+ KR  L   +   GSQ+F++   ++    + 
Sbjct: 286 GEHLMKQKERHCIFLIDDFASELDQYKRALLAERLKQSGSQVFVSAITETQLKQMQ 341


>gi|326562314|gb|EGE12640.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           103P14B1]
 gi|326575518|gb|EGE25443.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           101P30B1]
          Length = 402

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 163/369 (44%), Gaps = 39/369 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I E RN   + L   A + I VG NG GKT++LEA+  LS G+ FR        R
Sbjct: 2   IKQLQIHELRNLKQVNLTLAACNLI-VGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  + +AR +  E       K      +S   L+ N+  +     L+ HL    + 
Sbjct: 61  -HHQSACTVWARTKFEESCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTLLID 119

Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS- 184
           P SM  +  G S+ RR+ LD + F I P+   + + ++RL++ RN LL            
Sbjct: 120 PVSMSLLDEG-SISRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLPEL 178

Query: 185 -SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFC 241
            + + Q+      ++  R+ + +  +    E + K+  P  H  LSL  +L G FD    
Sbjct: 179 FAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQ-YLAG-FD---- 231

Query: 242 ALKEEYAKKLFDGRKM----DSMSRRTLIGPHRSDL---IVDYCDKAITIAHGST----- 289
                Y K L    KM    D     T IG HR+D+   I    ++  TI   +T     
Sbjct: 232 -----YTKPLSQTLKMRFNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSR 286

Query: 290 GEQKVVLVGIFLAHARLISNT-------TGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           GE+K+++  + L+  +L+ +        T   P++L+D++ A LDED    L + V  + 
Sbjct: 287 GEKKLLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLP 346

Query: 343 SQIFMTGTD 351
            Q  +T  +
Sbjct: 347 CQAIITSLN 355


>gi|76798667|ref|ZP_00780891.1| DNA replication and repair protein recF [Streptococcus agalactiae
           18RS21]
 gi|76585977|gb|EAO62511.1| DNA replication and repair protein recF [Streptococcus agalactiae
           18RS21]
          Length = 242

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 111/233 (47%), Gaps = 9/233 (3%)

Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKIN 198
           RR+FLD  +  I P +   + ++  +++ RN  L T    D ++ + ++ Q+A+ G ++ 
Sbjct: 4   RRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLTVLDEQLADYGSRVI 63

Query: 199 IARVEMINALSSLI--MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             R + I AL+       Y+      H+ +     ++   D+S  +++E +  +L     
Sbjct: 64  EHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEFT-DKS--SIREHFLNQLSKSHS 120

Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
            D   + T IGPHR D+     D   T A  S G+Q+ +++ + LA   LI   T   PI
Sbjct: 121 RDIFKKNTSIGPHRDDITFFINDINATFA--SQGQQRSLILSLKLAEIELIKTVTNDYPI 178

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
           LLLD++ + LD  ++  L   + +   Q F+T T      +L +  K   +S+
Sbjct: 179 LLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLKIFNVSD 230


>gi|53729132|ref|ZP_00134098.2| COG1195: Recombinational DNA repair ATPase (RecF pathway)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207491|ref|YP_001052716.1| recombination protein F [Actinobacillus pleuropneumoniae L20]
 gi|166220695|sp|A3MY75|RECF_ACTP2 RecName: Full=DNA replication and repair protein recF
 gi|126096283|gb|ABN73111.1| DNA replication and repair protein RecF [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 360

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 155/355 (43%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +    +
Sbjct: 6   LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    AR++  EG    S+ ++ +       L+IN      + +L   L +  + P  
Sbjct: 66  EDFV-LHARID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186
             + +G    RR FLD  +F           + +RL++ RN  L +   Y +   W    
Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++A+L   ++  R     AL   I +  Q    P +++ ++      F Q +     +
Sbjct: 178 DTELAKLAEIVSQMRANYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGTD 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305
           YA+ L  G + D     T+IGP ++D    +    + +    S G+ K+++  + LA   
Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCVLRLAQGE 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   D LN+
Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339


>gi|326561745|gb|EGE12080.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           7169]
 gi|326563090|gb|EGE13363.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           12P80B1]
 gi|326569034|gb|EGE19103.1| DNA replication and repair protein RecF [Moraxella catarrhalis BC1]
 gi|326571723|gb|EGE21736.1| DNA replication and repair protein RecF [Moraxella catarrhalis BC8]
 gi|326574363|gb|EGE24306.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           CO72]
 gi|326578063|gb|EGE27923.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           O35E]
          Length = 402

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 163/369 (44%), Gaps = 39/369 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I E RN   + L   A + I VG NG GKT++LEA+  LS G+ FR        R
Sbjct: 2   IKQLQIHELRNLKQVNLTLAACNLI-VGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  + +AR +  E       K      +S   L+ N+  +     L+ HL    + 
Sbjct: 61  -HHQSACTVWARTKFEESCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTLLID 119

Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS- 184
           P SM  +  G S+ RR+ LD + F I P+   + + ++RL++ RN LL            
Sbjct: 120 PVSMSLLDEG-SISRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLPEL 178

Query: 185 -SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFC 241
            + + Q+      ++  R+ + +  +    E + K+  P  H  LSL  +L G FD    
Sbjct: 179 FAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQ-YLAG-FD---- 231

Query: 242 ALKEEYAKKLFDGRKM----DSMSRRTLIGPHRSDL---IVDYCDKAITIAHGST----- 289
                Y K L    KM    D     T IG HR+D+   I    ++  TI   +T     
Sbjct: 232 -----YTKPLSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSR 286

Query: 290 GEQKVVLVGIFLAHARLISNT-------TGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           GE+K+++  + L+  +L+ +        T   P++L+D++ A LDED    L + V  + 
Sbjct: 287 GEKKLLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLP 346

Query: 343 SQIFMTGTD 351
            Q  +T  +
Sbjct: 347 CQAIITSLN 355


>gi|332304389|ref|YP_004432240.1| DNA replication and repair protein RecF [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171718|gb|AEE20972.1| DNA replication and repair protein RecF [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 363

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 144/361 (39%), Gaps = 39/361 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + I   RN   + L         +G NG GK++ILEAI +L  GR FR   +  V
Sbjct: 1   MKLDSVQIRNLRNLQQVSLNPSHGVNFILGINGSGKSSILEAIHYLGFGRSFRTTKHKHV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    S F+ F +    E +  + I   +R+   V  + IN V    + EL   L +  
Sbjct: 61  IQSDQES-FTVFCQCTDQESVKRLGI---SRNINDVVSVSINGVRGNKISELVSQLPVQI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    I  G    RR+++D  +F ++         + +L++  N L  +   GY D  
Sbjct: 117 FTPQSSDILLGSPKLRRKYIDWCLFHVEHPFLICSNSYTKLLKHNNALCRKHQVGYADPQ 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  +A+ G  +   R  M+  L  LI       N  H            F   FC
Sbjct: 177 RIYWTE-HLAKYGETLTQFRNTMMERLIPLIT-----SNLEH------------FLPEFC 218

Query: 242 ALKEEY---------AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG--STG 290
                Y          + L      D  +    +GPH++D+      K    AH   S G
Sbjct: 219 VEISYYRGWEKGLDLIEALAKASDRDYRNGYISVGPHKADVRFKIDGKP---AHEVLSRG 275

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + ++++  + LA  + + + T    I LLD++ A LD  KR      + +  +Q+F+T  
Sbjct: 276 QLRMLVAALQLATTQCLMSYTQKTCIFLLDDVGAELDAAKREVFIDKLLESNTQLFVTAI 335

Query: 351 D 351
           +
Sbjct: 336 E 336


>gi|268610500|ref|ZP_06144227.1| recombination protein F [Ruminococcus flavefaciens FD-1]
          Length = 382

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 161/372 (43%), Gaps = 18/372 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           + +  I  F+N   +    D ++ I VG N  GKTN+LEA+  LS  + FR +   D   
Sbjct: 3   VTYAEIDGFKNLKGVSFAPDPKYNIIVGANAQGKTNLLEAMWILSGCKSFRGSKEKDYIC 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +      S    V+  + + +  I  E  +   S + + +N V  R    L    +    
Sbjct: 63  LDGQRMSSA---VKVQDSVREQKITFEMAKGGNSPKLIHLNGVKQRGTRALFDVFKCIAF 119

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +P    I  G   +RR F+D     ++P     +     +M  RN LL E    ++    
Sbjct: 120 IPDDTDIIKGSPEKRRSFIDMAASQLNPMFVMHLNKNNAIMNQRNALLKEISQRNASADV 179

Query: 186 IEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQ 238
           +E    Q ++ G  I+  R E ++ ++ +        +    +LSL      +    F++
Sbjct: 180 LEIWDRQASKEGAVISWMRNEYVSKINEICGRLYNTISGGAEELSLEYRSNVYKPEDFEK 239

Query: 239 SFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                 EE Y ++L +  + D  +  T  G +R ++ +   +       GS G+ K   +
Sbjct: 240 PIGEEAEELYYRRLRETSEYDIRTGSTHSGVNRDEISIK-INGVSARDFGSQGQIKSAAL 298

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA A +    +  AP++ LD++   LDE+++  +F I+ D+  Q+F+T  ++S    
Sbjct: 299 VMKLAQAEIYMKKSKDAPVVFLDDVMGELDENRQRFVFDIIRDM--QVFVTTPNESAL-- 354

Query: 358 LNE-TAKFMRIS 368
           L E   K +RIS
Sbjct: 355 LPEIKGKILRIS 366


>gi|84621660|ref|YP_449032.1| recombination protein F [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|123523723|sp|Q2P9L9|RECF_XANOM RecName: Full=DNA replication and repair protein recF
 gi|84365600|dbj|BAE66758.1| DNA replication and repair protein recF [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 362

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 143/342 (41%), Gaps = 8/342 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      + + G+
Sbjct: 6   LSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                     EG     + + +   R        +++   +  +  L   L +    P  
Sbjct: 66  NDLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 125

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + SG    RRRFLD  +F ++P        + R ++ RN LL +G        + + +
Sbjct: 126 HVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQGA-QPRMLDAWDHE 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +AE G  +   R+  +  L   ++  V     P + LS   F  G + +   +L    A 
Sbjct: 185 LAESGETLTSRRMRYLERLQDRLIP-VADVIAPSLGLSALTFAPG-WKRHEVSL----AD 238

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L   R  D  +  T  GPHR+D +  + D        S G+ K+  +   LA A   + 
Sbjct: 239 ALLLARDRDRQNGYTSQGPHRADWMPHF-DVLPGKDALSRGQAKLTALACLLAQAEDFAF 297

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
                P++ LD++ + LD   +  +   +    +Q+ +TGT+
Sbjct: 298 ERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQMLITGTE 339


>gi|171741732|ref|ZP_02917539.1| hypothetical protein BIFDEN_00823 [Bifidobacterium dentium ATCC
           27678]
 gi|283454962|ref|YP_003359526.1| Recombinational DNA repair ATPase RecF [Bifidobacterium dentium
           Bd1]
 gi|171277346|gb|EDT45007.1| hypothetical protein BIFDEN_00823 [Bifidobacterium dentium ATCC
           27678]
 gi|283101596|gb|ADB08702.1| Recombinational DNA repair ATPase RecF [Bifidobacterium dentium
           Bd1]
          Length = 396

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 146/360 (40%), Gaps = 55/360 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  +R++    L F+    I  G NG+GKTNI+EA+  LS G   R +S   +  
Sbjct: 3   ISRLALDHYRSWERCVLDFEPGVNILQGANGLGKTNIVEAVEVLSTGSSHRTSSSLPLIE 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  S  +  A VE         + +  R     R    N + +R  D + K   +S+  
Sbjct: 63  RGCAS-ATIRANVEDDRNRHSYEVTIAARGANRARIDGGNSLYMR--DVIGKIPSVSF-T 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSW 182
           P   R+ SG    RR F+++    + P +  R+  F  + + R  LL +    G FD  +
Sbjct: 119 PEDQRLVSGDPATRRNFINQAGALLIPHYMERLQQFTHVAKQRTALLKQLGDRGDFDPQY 178

Query: 183 -----CSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--- 231
                 S +E    Q  ++G+ +   R  +I  LS         E F  +  SL G    
Sbjct: 179 GRQAALSGLEIWTGQFIDIGMALTHDRATLIERLS---------EPFSRVYASLAGIDQQ 229

Query: 232 ----LDGKFDQSF-----CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
                +  FD+        A    + ++++ G   +    + LIGPHR DL +       
Sbjct: 230 ALLHYEPSFDEVMLYDDPAAEISRHFQRIYPG---EVARGQNLIGPHRDDLTL------- 279

Query: 283 TIAHG-------STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
              HG       S GE   + + + +A    +       PI++LD++ A LDE +R  + 
Sbjct: 280 -TLHGMPAREFASNGEMWTMALALKMALYETVCADQQTKPIVILDDVFAQLDESRREQIL 338


>gi|307244804|ref|ZP_07526903.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253758|ref|ZP_07535612.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258215|ref|ZP_07539958.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306854249|gb|EFM86455.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863242|gb|EFM95182.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867675|gb|EFM99520.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 360

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 154/355 (43%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +    +
Sbjct: 6   LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     R++  EG    S+ ++ +       L+IN      + +L   L +  + P  
Sbjct: 66  EDFV-LHGRID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186
             + +G    RR FLD  +F           + +RL++ RN  L +   Y +   W    
Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++A+    ++  R +   AL   I +  Q    P +++ ++      F Q +     +
Sbjct: 178 DIELAKFAETVSQMRAKYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGTD 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305
           YA+ L  G + D     T+IGP ++D    +    + +    S G+ K+++  + LA   
Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQGE 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   D LN+
Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339


>gi|300725946|ref|ZP_07059408.1| RecF protein [Prevotella bryantii B14]
 gi|299776797|gb|EFI73345.1| RecF protein [Prevotella bryantii B14]
          Length = 368

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 160/379 (42%), Gaps = 43/379 (11%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           +++  ++N  +  LV   +   F+G NGVGKTN+L+A+ +LS    F  ++Y  +     
Sbjct: 6   ISVINYKNIRTADLVLSPKINCFIGQNGVGKTNLLDAVYYLS----FCHSAYNPMDS-QC 60

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS------ 123
            +    F  +EG       +   +  D  ++ C               ++ R+S      
Sbjct: 61  ITHDEDFFVLEG-------NYSTDNGDSENIYCGMKRGTKKHFKRNKKEYKRLSQHIGLI 113

Query: 124 ---WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFD 179
              ++ PS   +  G S  RR+ +D ++   D  +   + ++ + ++ RN LL  E   D
Sbjct: 114 PLIFISPSDSFLIEGGSEGRRKLMDVVISQYDNTYMDALNNYNKALQQRNALLKMEDEPD 173

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            S     E +MAE G  I   R + +N L  +  E  +K +     +SL     G+    
Sbjct: 174 VSLLDIWEHEMAEQGTLIYQKRDDFVNKLVPVFQEIYRKISGDRETVSLRYVSHGQRGDL 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL---IVDYCDKAITIAHGSTGEQKVVL 296
           +  +  +        R  D     +L G HR DL   I DY  K      GS G+ K  +
Sbjct: 234 YDVISRD--------RFKDRAVGYSLHGVHRDDLEMLIGDYQMKR----EGSQGQNKTFV 281

Query: 297 VGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSV 354
           + + LA    +  T +G  P+LLLD+I   LD D+   +  +V+     QIF+T T++  
Sbjct: 282 LALKLAQFDFLKRTASGTTPLLLLDDIFDKLDADRVEQIVNLVSSNNYGQIFITDTNRDH 341

Query: 355 FDSL----NETAKFMRISN 369
            D +    N   K   + N
Sbjct: 342 LDRILKHSNNVYKIFSVEN 360


>gi|320535591|ref|ZP_08035688.1| DNA replication and repair protein RecF [Treponema phagedenis
           F0421]
 gi|320147554|gb|EFW39073.1| DNA replication and repair protein RecF [Treponema phagedenis
           F0421]
          Length = 356

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 163/349 (46%), Gaps = 28/349 (8%)

Query: 7   IKFLNIS--EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + FL IS   FRN ++  +   A     +G NG GKTN+LE++   S G  FR  + +++
Sbjct: 1   MPFLTISLVNFRNLSNKPIDLSAPEVFLIGKNGQGKTNLLESLYIASYGNSFRTRTDSEI 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHLRI 122
              G+  +      + E  + ++ IS   + + +++++ ++   D+V  +   L  H  +
Sbjct: 61  YTTGTNEYSIRAMYKAEKTDSISIISKNGKKQIEKNLKKIRSRKDLVNTIPCVLFFHNDL 120

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            + V S +R        RR F+D+ +   +P +   +  +  L++ +N+ + E       
Sbjct: 121 DFAVGSPER--------RRFFIDQSLSMYNPFYLDLLQKYTVLLKTKNKEIKEQ--KRVL 170

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC- 241
             S++ Q+A +G +I   R + I+  +++  +  +K         ++G  + + +     
Sbjct: 171 LDSLDVQIASVGFEIISYRKKTIDEFNTIFSDIYEK---------VSGIDNVRIEYKPSW 221

Query: 242 --ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             +  EE    L   R+ D +    + GPHR D I    +  + I+  STG+ +++ + +
Sbjct: 222 KHSSAEEVMAHLAARREKDILLGTCMSGPHR-DKIHFVRNNELFISTASTGQLRLISLVL 280

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
             A A   +  TG  PILL+D++   LD DKR +   ++     Q+F T
Sbjct: 281 RTAQALFFTKITGKLPILLMDDVLLELDPDKRKSFTDLLPKY-DQLFCT 328


>gi|190149272|ref|YP_001967797.1| DNA replication and repair protein RecF [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262583|ref|ZP_07544214.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|226737764|sp|B3GZJ3|RECF_ACTP7 RecName: Full=DNA replication and repair protein recF
 gi|189914403|gb|ACE60655.1| DNA replication and repair protein RecF [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872081|gb|EFN03794.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 360

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 155/355 (43%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +    +
Sbjct: 6   LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    AR++  EG    S+ ++ +       L+IN      + +L   L +  + P  
Sbjct: 66  EDFV-LHARID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186
             + +G    RR FLD  +F           + +RL++ RN  L +   Y +   W    
Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++A+L   ++  R     AL   I +  Q    P +++ ++      F Q +     +
Sbjct: 178 DIELAKLAEIVSQMRASYAEALRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGTD 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305
           YA+ L  G + D     T+IGP ++D    +    + +    S G+ K+++  + LA   
Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCVLRLAQGE 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   D LN+
Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339


>gi|307608753|emb|CBW98135.1| RecF recombinational DNA repair ATPase [Legionella pneumophila
           130b]
          Length = 353

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 148/342 (43%), Gaps = 29/342 (8%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I  FRN AS  L+ +       G NG GKT++LEA+  LS    FR      +   G   
Sbjct: 8   IHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVTPIISYGQNQ 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             + FA        + IS++    D   ++   +N+       +L   L    +   + +
Sbjct: 68  -LNVFAHAYDE---STISVQKSITDGTQIK---LNNQFCCTTSQLAYALPCQVIYSDIFQ 120

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIE 187
           I       RR  LD  +F +   + +   D++R++  RN LL    T  +F   W    +
Sbjct: 121 IIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHF-IPW----D 175

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            Q+++L  +++ AR +          + +   +  +I  ++  +  G   ++     EE 
Sbjct: 176 QQLSQLANQLDKARNDYFLQWQPKFYQVL--SDLTNISCTIE-YYKGWDRKNAGQNIEEL 232

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARL 306
            +K FD    D     T  GPH++DLI++   +   + H  S G+QK++L+ + LA  +L
Sbjct: 233 LQKSFDS---DKNKLYTQYGPHQADLIINI--EQYRVKHTLSRGQQKIILIALKLAQGQL 287

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           +        + L+D+++A LD+  +  L   +T    Q  +T
Sbjct: 288 LDKDC----LYLIDDLAAELDDYHQRNLIMHLTQQKGQFVIT 325


>gi|132245|sp|P24718|RECF_ACTPL RecName: Full=DNA replication and repair protein recF
 gi|38953|emb|CAA45173.1| RecF [Actinobacillus pleuropneumoniae]
          Length = 360

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 154/355 (43%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +    +
Sbjct: 6   LIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHYQA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    AR++  EG    S+ ++ +       L+IN      + +L   L +  + P  
Sbjct: 66  EDFV-LHARID--EGQHQWSVGIQKKRSGDT-LLKINGEDGNKISDLAHLLPMQVITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSSI 186
             + +G    RR FLD  +F           + +RL++ RN  L +   Y +   W    
Sbjct: 122 LTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQVRSYAELKPW---- 177

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++A+L   ++  R      L   I +  Q    P +++ ++      F Q +     +
Sbjct: 178 DIELAKLAEIVSQMRASYAEGLRPEIEKTCQF-FLPELEIGVS------FHQGW-EKGTD 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHAR 305
           YA+ L  G + D     T+IGP ++D    +    + +    S G+ K+++  + LA   
Sbjct: 230 YAEILAQGFERDKAMGYTMIGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQGE 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   D LN+
Sbjct: 288 YLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITK---DQLNQ 339


>gi|220907659|ref|YP_002482970.1| recombination protein F [Cyanothece sp. PCC 7425]
 gi|254790473|sp|B8HVF7|RECF_CYAP4 RecName: Full=DNA replication and repair protein recF
 gi|219864270|gb|ACL44609.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7425]
          Length = 377

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 166/360 (46%), Gaps = 19/360 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRNY    + F A  TI VG N  GK+N+LEA+  LS  R  R     ++  
Sbjct: 3   LKSLQLRYFRNYREQVIDFAAPKTILVGQNAQGKSNLLEAVELLSTLRSHRSHRDRELVL 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR-ISWL 125
            G  +     A +E   G  D+++ L +   R+   L +N   +R   +   HL  + + 
Sbjct: 63  SGQEN-GQIIATIERDSGPLDLTLNLRSNGRRT---LMVNSEPVRRHLDFLGHLNAVEFS 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSS 181
              +D +  G   ERR +LD ++  ++P +   +  +  ++R RN  L     EG  D +
Sbjct: 119 SLDLD-LVRGTPAERRNWLDNVLIQLEPFYAHLLQQYNHVLRQRNAFLKSYQREGSLDHT 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ----KENFPHIKLSLTGFLDGKFD 237
                + Q+A  G ++   R  ++  L+ L   + Q    K     +  +    L+G   
Sbjct: 178 ELKLWDQQLASTGTRLTRRRQRLLVRLAPLATHWHQAISGKNEDLQVHYAPNVPLEGDEP 237

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +   A+ + + +KL      +     +L+GPHR ++ +   ++     +GS G+Q+ +++
Sbjct: 238 E---AIYQAFLEKLQQKAIAEQHQGTSLVGPHRDEVEL-IINQTPARQYGSQGQQRTLVL 293

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA  +LI    G  P+LLLD++ A LD  ++N L   + D   Q  +T T    FD+
Sbjct: 294 ALKLAELKLIEEVIGEPPLLLLDDVLAELDLQRQNQLLETIQD-RFQTLITTTHLGAFDA 352


>gi|269122839|ref|YP_003305416.1| DNA replication and repair protein RecF [Streptobacillus
           moniliformis DSM 12112]
 gi|268314165|gb|ACZ00539.1| DNA replication and repair protein RecF [Streptobacillus
           moniliformis DSM 12112]
          Length = 358

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 152/354 (42%), Gaps = 26/354 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +  S FRN    R+       +  G+N  GKT+ +EAI F + GR FR     ++ +
Sbjct: 2   IKEIFFSGFRNLIDKRIKLSRGFNLIYGENAQGKTSFMEAIYFGATGRSFRTKKNNEMIK 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ------INDVVIRVVDELNKHL 120
             S                A I +KL+   + S+   +       N   I+ VD +   L
Sbjct: 62  YDSND--------------AKIFVKLDNTSNYSINLFKNEKKYFKNGEKIKYVDYIGDIL 107

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +S++   ++ +    S+ RR F +  +  I+  +   ++D+E++++ RN++L +     
Sbjct: 108 AVSFIPEDVELVMGNPSI-RRGFFNYEISQINKEYLHLIVDYEKILKVRNKMLKDKKHKE 166

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPH-IKLSLTGFLDGKFDQ 238
                   +  ++  KI   R E ++ L+  +   Y    N  H  KL    FL    D 
Sbjct: 167 ELYLIYNEKYIDICAKILKIRKEYVDELNKYLDKNYKDLFNIEHNFKLIYENFLKID-DV 225

Query: 239 SFCALKEEYAKKLFDGRKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           S     ++  +KL   +++ D     +  G H+ + I +   K     + S GE+K ++ 
Sbjct: 226 SDIEENKKIIEKLLKSKEIYDIQVGYSNYGVHKDEYIFELNGKNAR-HYSSQGEKKSIVF 284

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + ++   LI       PI L+D+I++  D  ++N +     +   Q F+T T+
Sbjct: 285 ILKISEIELIEKKENKKPIFLMDDITSFFDNFRKNQIIHYFLEKEIQCFLTSTE 338


>gi|298345813|ref|YP_003718500.1| recombination protein F [Mobiluncus curtisii ATCC 43063]
 gi|298235874|gb|ADI67006.1| recombination protein F [Mobiluncus curtisii ATCC 43063]
          Length = 413

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 165/391 (42%), Gaps = 38/391 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT--RI 67
           L +  FR+Y  + L F A   +FVG NG GKTN+LEA+++L+     R  + A +    I
Sbjct: 6   LALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGLIFREI 65

Query: 68  G----SPSFFSTF---ARVEGMEGLADIS-----IKLETRDDRSVRCLQINDVVIRVVDE 115
           G    SP+        ARV     L D       +++E    R+ R + IN   +R    
Sbjct: 66  GDTVRSPATLRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNVRPRSL 124

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L  HL      P   ++  G    RR FLDR+   + P     + ++ ++ R R   L +
Sbjct: 125 LG-HLSTVLFAPEDLQLVQGDPATRRTFLDRIAIQLRPTLVGALGEYTKIARQRGAYLKD 183

Query: 176 -----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFP-HIKLSL 228
                   D    S  +  +    V++   R  +I+ L+  +   Y +    P  + L+ 
Sbjct: 184 VAKRRAPIDEIQLSIWDDALVPAAVEVMRERARVIDQLAQFLPSVYARIAGHPAPVGLTY 243

Query: 229 TGFLDGKFDQSFCALKEEYA----------KKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
              +    + S    +E YA          + L      ++     L+GPHR +L + + 
Sbjct: 244 ADSVTKTLELSADEQREMYANPELLSSVFRQALAQCHADEARRGVNLVGPHRDELEL-HL 302

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           +        S GE     + + LA   L+       P+LLLD++ A LDE +R AL   +
Sbjct: 303 NGLPVKGFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAALLWAI 362

Query: 339 TDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368
            D   Q+F+T  T   + ++L+  A F R++
Sbjct: 363 -DQADQVFITSATGTEIPEALH--AAFYRVT 390


>gi|317503542|ref|ZP_07961566.1| recombination protein F [Prevotella salivae DSM 15606]
 gi|315665354|gb|EFV04997.1| recombination protein F [Prevotella salivae DSM 15606]
          Length = 366

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 158/363 (43%), Gaps = 32/363 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  ++N     ++  ++   F+G NGVGKTN+L+A+ +LS    F R+++  +  
Sbjct: 3   LKRLSVINYKNIREATILLSSKLNCFIGSNGVGKTNVLDAVHYLS----FCRSAFNPIDA 58

Query: 67  ---IGSPSFF---STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
                +  FF     ++  EG E      +K  T+     +  + N    R    L++H+
Sbjct: 59  QVITHNQDFFVLDGKYSSDEGDEEQIYCGMKRGTK-----KHFKRNKKEYR---RLSQHI 110

Query: 121 RISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EG 176
            +  LV   P+   +  G S ERRR LD ++   D  +   +  + + ++ RN LL  E 
Sbjct: 111 GLIPLVFASPADSILIEGGSEERRRLLDVVISQYDHAYIEALSAYNKALQQRNALLKMEE 170

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
             D +     E QMA  G  I   R   +  L  +  +     +  H  ++L     G+ 
Sbjct: 171 EPDKALLEIWEEQMALNGEIIYQKRNSFVERLVPVFQDIYTHISGGHETVALNYVSHGQR 230

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 ++ +        R  D     +L G HR DL +   D       GS G+ K   
Sbjct: 231 GPLLDTIQRD--------RHRDRAVGYSLHGVHRDDLEM-LLDGYQMKREGSQGQHKTYA 281

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVF 355
           + + LA    +  T+   P+LLLD+I   LD ++   + ++V  D   QIF+T T++   
Sbjct: 282 LALKLAQFDFLRRTSNNTPLLLLDDIFDKLDANRVEKIVQLVGGDEFGQIFITDTNRDHL 341

Query: 356 DSL 358
           D +
Sbjct: 342 DQI 344


>gi|326560703|gb|EGE11071.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           46P47B1]
          Length = 402

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 162/369 (43%), Gaps = 39/369 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I E RN   + L   A + I VG NG GKT++LEA+  LS G+ FR        R
Sbjct: 2   IKQLQIHELRNLKQVNLTLAACNLI-VGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  + +AR +  E       K      +S   L+ N+  +     L+ HL    + 
Sbjct: 61  -HHQSACTVWARTKFEESCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTLLID 119

Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS- 184
           P SM  +  G S  RR+ LD + F I P+   + + ++RL++ RN LL            
Sbjct: 120 PVSMSLLDEG-STSRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLPEL 178

Query: 185 -SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFC 241
            + + Q+      ++  R+ + +  +    E + K+  P  H  LSL  +L G FD    
Sbjct: 179 FAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQ-YLAG-FD---- 231

Query: 242 ALKEEYAKKLFDGRKM----DSMSRRTLIGPHRSDL---IVDYCDKAITIAHGST----- 289
                Y K L    KM    D     T IG HR+D+   I    ++  TI   +T     
Sbjct: 232 -----YTKPLSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSR 286

Query: 290 GEQKVVLVGIFLAHARLISNT-------TGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           GE+K+++  + L+  +L+ +        T   P++L+D++ A LDED    L + V  + 
Sbjct: 287 GEKKLLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLP 346

Query: 343 SQIFMTGTD 351
            Q  +T  +
Sbjct: 347 CQAIITSLN 355


>gi|317481502|ref|ZP_07940567.1| DNA replication and repair protein RecF [Bacteroides sp. 4_1_36]
 gi|316902348|gb|EFV24237.1| DNA replication and repair protein RecF [Bacteroides sp. 4_1_36]
          Length = 370

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 151/355 (42%), Gaps = 16/355 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F  +   F G NG+GKTN+L+A+ FLS  +       +   R
Sbjct: 3   LKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQNIR 62

Query: 67  IGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                FF      E  +G  + I   ++ R  +  +  +      R+ D +   L +  +
Sbjct: 63  -HDADFFVIQGFYEAADGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDHIG-FLPLVMV 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCS 184
            P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +     
Sbjct: 119 SPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEELFL 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             E  MA+ G  +   R   I     +   +    +    K+ L+     +       LK
Sbjct: 179 VWEEMMAQAGEVVFRKREAFIREFIPIFQSFYSFISQDREKVGLSYDSHARDASLLEVLK 238

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E         R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA  
Sbjct: 239 E--------SRVRDQIMGYSLRGVHKDELNMLLGDFPIK-REGSQGQNKTYLVALKLAQF 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358
             +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +
Sbjct: 290 DFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDSFGQIFITDTNREHLDRI 344


>gi|326571822|gb|EGE21828.1| DNA replication and repair protein RecF [Moraxella catarrhalis BC7]
          Length = 402

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 162/369 (43%), Gaps = 39/369 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I E RN   + L   A + I VG NG GKT++LEA+  LS G+ FR        R
Sbjct: 2   IKQLQIHELRNLKQVNLTLAACNLI-VGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  + +AR +  E       K      +S   L+ N+  +     L+ HL    + 
Sbjct: 61  -HHQSACTVWARTKFEESCTLAIQKKLDETGKSDSILRFNEHTVSTQSALSFHLPTLLID 119

Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS- 184
           P SM  +  G S  RR+ LD + F I P+   + + ++RL++ RN LL            
Sbjct: 120 PVSMSLLDEG-STSRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLPEL 178

Query: 185 -SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFC 241
            + + Q+      ++  R+ + +  +    E + K+  P  H  LSL  +L G FD    
Sbjct: 179 FAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQ-YLAG-FD---- 231

Query: 242 ALKEEYAKKLFDGRKM----DSMSRRTLIGPHRSDL---IVDYCDKAITIAHGST----- 289
                Y K L    KM    D     T IG HR+D+   I    ++  TI   +T     
Sbjct: 232 -----YTKPLSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSR 286

Query: 290 GEQKVVLVGIFLAHARLISNT-------TGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           GE+K+++  + L+  +L+ +        T   P++L+D++ A LDED    L + V  + 
Sbjct: 287 GEKKLLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLP 346

Query: 343 SQIFMTGTD 351
            Q  +T  +
Sbjct: 347 CQAIITSLN 355


>gi|296112233|ref|YP_003626171.1| DNA replication and repair protein RecF [Moraxella catarrhalis RH4]
 gi|295919927|gb|ADG60278.1| DNA replication and repair protein RecF [Moraxella catarrhalis RH4]
          Length = 402

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 162/369 (43%), Gaps = 39/369 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I E RN   + L   A + I VG NG GKT++LEA+  LS G+ FR        R
Sbjct: 2   IKQLQIHELRNLKQVNLTLAACNLI-VGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  + +AR +  E       K      +S   L+ N+  +     L+ HL    + 
Sbjct: 61  -HHQSACTVWARTKFEESCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTLLID 119

Query: 127 P-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS- 184
           P SM  +  G S  RR+ LD + F I P+   + + ++RL++ RN LL            
Sbjct: 120 PVSMSLLDEG-STSRRQILDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLPEL 178

Query: 185 -SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFC 241
            + + Q+      ++  R+ + +  +    E + K+  P  H  LSL  +L G FD    
Sbjct: 179 FAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQ-YLAG-FD---- 231

Query: 242 ALKEEYAKKLFDGRKM----DSMSRRTLIGPHRSDL---IVDYCDKAITIAHGST----- 289
                Y K L    KM    D     T IG HR+D+   I    ++  TI   +T     
Sbjct: 232 -----YTKPLSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSR 286

Query: 290 GEQKVVLVGIFLAHARLISNT-------TGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           GE+K+++  + L+  +L+ +        T   P++L+D++ A LDED    L + V  + 
Sbjct: 287 GEKKLLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLP 346

Query: 343 SQIFMTGTD 351
            Q  +T  +
Sbjct: 347 CQAIITSLN 355


>gi|237736250|ref|ZP_04566731.1| DNA replication and repair protein recF [Fusobacterium mortiferum
           ATCC 9817]
 gi|229421598|gb|EEO36645.1| DNA replication and repair protein recF [Fusobacterium mortiferum
           ATCC 9817]
          Length = 365

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 156/350 (44%), Gaps = 23/350 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           +N   FRN     + F  +  +F G NG GKT++LEA+ F + G+ FR +   ++ + G 
Sbjct: 6   INYINFRNLIDGSVKFFPKLNLFFGKNGQGKTSLLEAVYFNATGKSFRTSKANEMMKYGV 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                T   +   + + + ++ ++  D++         V     DE    L +   +P  
Sbjct: 66  K---RTGVYIVYRDNIGEKTLTVKFNDNKKEYYYNNKKV---PYDEFYGKLNVVTYIPED 119

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR F D  +   +  + + + ++ +L++ RN+ L E     +     E +
Sbjct: 120 IVLITGSPSIRRTFFDGEIAQTNSEYFQDLKNYNKLLKIRNKYLKEERTKDTEYLVYEDE 179

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCALKE-- 245
             + G K+   R+E +  +S ++    +K  +N   + LS    L G   +   +LKE  
Sbjct: 180 FIKYGAKVIEKRLEYVQKISIILNLNYRKLFDNKKELSLSYECHL-GNIKK--LSLKEIE 236

Query: 246 ----EYAKKLFDGRKMDSMSRRTLIGPHRSD-LIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E  KK F   K    S   L GP + D L +    +A + A  S GE+K ++  + 
Sbjct: 237 KLLREKIKKNFSQEKRYGFS---LCGPQKDDFLFILNGHEAKSTA--SQGEKKSIIFSLK 291

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           L+   ++       P+L++D+IS++ D +++ ++   +     Q+ ++ T
Sbjct: 292 LSEIDMVIREKKENPVLIIDDISSYFDSNRKESILNYLEKRNIQVLVSST 341


>gi|306823994|ref|ZP_07457368.1| recombination protein F [Bifidobacterium dentium ATCC 27679]
 gi|309801974|ref|ZP_07696088.1| DNA replication and repair protein RecF [Bifidobacterium dentium
           JCVIHMP022]
 gi|304552992|gb|EFM40905.1| recombination protein F [Bifidobacterium dentium ATCC 27679]
 gi|308221422|gb|EFO77720.1| DNA replication and repair protein RecF [Bifidobacterium dentium
           JCVIHMP022]
          Length = 396

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 147/362 (40%), Gaps = 55/362 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R++    L F+    I  G NG+GKTNI+EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWERCVLDFEPGVNILQGANGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  S  +  A VE         + +  R     R    N + +R  D + K   +S+
Sbjct: 61  IERGCAS-ATIRANVEDDRNRHSYEVTIAARGANRARIDGGNSLYMR--DVIGKIPSVSF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P   R+ SG    RR F+++    + P +  R+  F  + + R  LL +    G FD 
Sbjct: 118 -TPEDQRLVSGDPATRRNFINQAGALLIPHYMERLQQFTHVAKQRTALLKQLGDRGDFDP 176

Query: 181 SW-----CSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF- 231
            +      S +E    Q  ++G+ +   R  +I  LS         E F  +  SL G  
Sbjct: 177 QYGRQAALSGLEIWTGQFIDIGMALTHDRATLIERLS---------EPFSRVYASLAGTD 227

Query: 232 ------LDGKFDQSF-----CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
                  +  FD+        A    + ++++ G   +    + LIGPHR DL +     
Sbjct: 228 QQALLRYEPSFDEVMLYDDPAAEISRHFQRIYPG---EVARGQNLIGPHRDDLTL----- 279

Query: 281 AITIAHG-------STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
                HG       S GE   + + + +A    +       PI++LD++ A LDE +R  
Sbjct: 280 ---TLHGMPAREFASNGEMWTMALALKMALYETVCADQQTKPIVILDDVFAQLDESRREQ 336

Query: 334 LF 335
           + 
Sbjct: 337 IL 338


>gi|257456817|ref|ZP_05622001.1| DNA replication and repair protein RecF [Treponema vincentii ATCC
           35580]
 gi|257445823|gb|EEV20882.1| DNA replication and repair protein RecF [Treponema vincentii ATCC
           35580]
          Length = 358

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 41/340 (12%)

Query: 7   IKFLNIS--EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + FL+IS   FRN  +  +   A     VG NG GKTN+LEA+   S G  FR  + A++
Sbjct: 1   MPFLSISPYNFRNLENKAIDLSAPEVFLVGQNGQGKTNLLEALYLASYGNSFRTRNEAEI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVDELNK-HLRI 122
            +  +  +               I +  +  ++RS    +   D    +   L K H R 
Sbjct: 61  YKKNTNEY--------------SIRVLFKENEERSHNISIISKDKKKIIEKNLKKIHDRK 106

Query: 123 SWL--VPSM-----DRIFSGLSMERRR-FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            ++  +P +     D  F+  S ERRR F+D+ +   D  +   + +F +L++ RN +L 
Sbjct: 107 DFISTIPCILFCHDDLDFATGSPERRRFFIDQSLSLYDSSYIDILRNFTKLLKSRNLVLK 166

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           E    S     I+AQ+  +G++I   R   +E  N + S + E +   +   I  S   +
Sbjct: 167 EK--KSEILDVIDAQLIPIGLQIMERRRALIESFNNIFSSLYENIGGIDSVMIDYS-PSW 223

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
               FD+   +L E+        R++D     ++ GPHR D I    +K   +   S G+
Sbjct: 224 KSANFDEVLISLIEK--------RQLDFTMNTSMSGPHR-DKIRFVRNKKPFVQTASMGQ 274

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           Q+++ + +  A A   + TT   P+LL+D++   LD +KR
Sbjct: 275 QRLLSLVLRAAQAYFYTETTKRLPVLLMDDVLLELDPEKR 314


>gi|189462141|ref|ZP_03010926.1| hypothetical protein BACCOP_02823 [Bacteroides coprocola DSM 17136]
 gi|189431114|gb|EDV00099.1| hypothetical protein BACCOP_02823 [Bacteroides coprocola DSM 17136]
          Length = 373

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 156/366 (42%), Gaps = 37/366 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + + F  +    +G NG+GKTN+L+A+ +LS  +    A   D   
Sbjct: 3   LKRISILNYKNLEQVEVAFSRKMNCIIGKNGMGKTNLLDAVYYLSFCKSATNA--IDSQN 60

Query: 67  I-GSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           I     FF      E  EG  + +   L+ R  +  +  +      +    L+ H+ +  
Sbjct: 61  ILHDRDFFVVQGFYETDEGEPEEVYCGLKRRQKKQFKRNK------KEYSRLSDHIGLIP 114

Query: 125 LV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEG 176
           LV   P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL      E 
Sbjct: 115 LVMVSPADSWLIAGGSEERRRFIDVVISQFDREYLEALIRYNKALLQRNSLLKADVEPEE 174

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDG 234
                W    E  MA  G  +   R   I+    +   Y     ++   + LS       
Sbjct: 175 ELMLVW----EEMMAASGETVYAKRKAFIDEFIPVFQSYYSYISQDREQVSLSYESH--- 227

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                  A K    ++L + R+ D +   +  G H+ DLI+   D  I    GS G+ K 
Sbjct: 228 -------AAKGNLLEQLKEVRQRDRILGYSTRGIHKDDLIMQLGDFPIK-REGSQGQNKT 279

Query: 295 VLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDK 352
            L+ + LA    +  T +   PI+LLD+I   LD  +   + ++V  D   QIF+T T++
Sbjct: 280 YLIALKLAQFEFLKRTGSRTTPIVLLDDIFDKLDASRVEQIVKLVAGDSFGQIFVTDTNR 339

Query: 353 SVFDSL 358
              D +
Sbjct: 340 DHLDKI 345


>gi|315654387|ref|ZP_07907295.1| recombination protein F [Mobiluncus curtisii ATCC 51333]
 gi|315491422|gb|EFU81039.1| recombination protein F [Mobiluncus curtisii ATCC 51333]
          Length = 413

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 165/395 (41%), Gaps = 46/395 (11%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA------- 62
           L +  FR+Y  + L F A   +FVG NG GKTN+LEA+++L+     R  + A       
Sbjct: 6   LALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGLIFREI 65

Query: 63  -DVTRIGSPSFFSTF-ARVEGMEGLADIS-----IKLETRDDRSVRCLQINDVVIRVVDE 115
            D  R  + S      ARV     L D       +++E    R+ R + IN   +R    
Sbjct: 66  GDTVRSPATSRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNVRPRSL 124

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L  HL      P   ++  G    RR FLDR+   + P     + ++ ++ R R   L +
Sbjct: 125 LG-HLSTVLFAPEDLQLVQGDPATRRTFLDRIAIQLRPTLVGALGEYTKIARQRGAYLKD 183

Query: 176 -----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFP-HIKLSL 228
                   D    S  +  +    V++   R  +I+ L+  + + Y +    P  + L+ 
Sbjct: 184 VAKRRAPIDEIQLSIWDDALVPAAVEVMRERARVIDQLAQFLPQVYARIAGHPAPVGLTY 243

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR--------------TLIGPHRSDLI 274
              +    + S    +E YA        + S+ R+               L+GPHR +L 
Sbjct: 244 ADSVTKTLELSADEQREMYANPEL----LSSVFRQALARRRADEARRGVNLVGPHRDELE 299

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           + + +        S GE     + + LA   L+       P+LLLD++ A LDE +R AL
Sbjct: 300 L-HLNGLPVKGFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAAL 358

Query: 335 FRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368
              + D   Q+F+T  T   + ++L+  A F R++
Sbjct: 359 LWAI-DQADQVFITSATGTEIPEALH--AAFYRVT 390


>gi|119503575|ref|ZP_01625658.1| recombination protein F [marine gamma proteobacterium HTCC2080]
 gi|119460637|gb|EAW41729.1| recombination protein F [marine gamma proteobacterium HTCC2080]
          Length = 376

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 167/362 (46%), Gaps = 42/362 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           + +  +++ + I   RN ++ RLV  ++  +  G NG GK++I+EA+S LS GR FR +S
Sbjct: 4   LHDNFRLESVYIDGVRNLSAQRLVMGSEINLISGPNGSGKSSIVEALSMLSTGRSFRSSS 63

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-----NDVVIRV--- 112
              V +                 G  D  ++ + R   SVR L I      ++ +R+   
Sbjct: 64  VRSVIQ----------------HGRDDCIVQAQVRYRGSVRSLGIRRSKTGELTLRLDGE 107

Query: 113 ----VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
               + E    +    + PS     +G    RRR +D  +F ++         ++R+++ 
Sbjct: 108 PMSSLAEFAAQVPTIIIDPSSTDTITGPPDSRRRLIDGTLFHVEHGFLDVWRRYQRVLKQ 167

Query: 169 RNRLLTEGYF--DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           RN +L  G       W      +++ +G  +   RV +++ L  +    + + N      
Sbjct: 168 RNAMLRRGMMRGQDPWLR----ELSRVGSDLTNYRVGLVSRLGPVFKSILAELNSALADT 223

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
            L  F  G +D S  +L+   A+      + D     T +GPHR+DL + +  ++++   
Sbjct: 224 ELV-FRFG-WDASL-SLEAGLARST----ESDIAQGFTHVGPHRADLRLQWQGRSMSDVF 276

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S G+ K+ ++ + LA  R+++ + G AP+ L+D+++A LD+     + R++    SQ+ 
Sbjct: 277 -SRGQLKLAVIALRLAQGRVLAESGGGAPLYLVDDLTAELDDHHALQVCRMLEQTSSQVV 335

Query: 347 MT 348
           +T
Sbjct: 336 LT 337


>gi|166709898|ref|ZP_02241105.1| recombination protein F [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 365

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 143/342 (41%), Gaps = 8/342 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      + + G+
Sbjct: 3   LSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +        EG     + + +   R        +++   +  +  L   L +    P  
Sbjct: 63  NNLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCSALAVVTFEPGS 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + SG    RRRFLD  +F ++P        + R ++ RN LL +G        + + +
Sbjct: 123 HVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQGA-QPRMLDAWDHE 181

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +AE G  +   R+  +  L   ++  V     P + LS   F  G + +   +L    A 
Sbjct: 182 LAESGETLTSRRMRYLERLQDRLIP-VADAIAPTLGLSALTFAPG-WKRHEVSL----AD 235

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L   R  D  +  T  GPHR+D +  + D        S G+ K+  +   LA A   + 
Sbjct: 236 ALLLARDRDRQNGYTSQGPHRADWMPHF-DVLPGKDALSRGQAKLTALACLLAQAEDFAF 294

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
                P++ LD++ + LD   +  +   +    +Q+ +T T+
Sbjct: 295 ERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQVLITATE 336


>gi|254444638|ref|ZP_05058114.1| hypothetical protein VDG1235_2879 [Verrucomicrobiae bacterium
           DG1235]
 gi|198258946|gb|EDY83254.1| hypothetical protein VDG1235_2879 [Verrucomicrobiae bacterium
           DG1235]
          Length = 358

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 155/362 (42%), Gaps = 42/362 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K K + +S +RN    RL  DA     +G NG GKTN+LEAI +++  R FR  +  + 
Sbjct: 1   MKFKAIGVSNYRNIKLARLNLDADRVFLLGRNGQGKTNLLEAIGYVTSLRAFR--ARENE 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADI--SIKLETRDDRSVRCL------QIN---DVVIRVV 113
             +G  S            G A+I   I+ E  +D   R L      +++   + V R  
Sbjct: 59  ILLGPES------------GQAEIVYEIEHEEFEDSEARVLIKRKGKEVSLDGEAVRRAS 106

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           D + +   ++     ++ I  G    RRRF+D  +  ID  +   +  +++ ++ RN LL
Sbjct: 107 DFVGRFPAVTLSSEDLN-IVRGSPGGRRRFIDTFLCGIDREYYVALQRYQKCVQERNALL 165

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
             G          EA++    + +   R  +I+ L S+   + +         +L+G  +
Sbjct: 166 KRGS-SMELMRPFEAELIGPALAVIRKRDSVISELGSMASRFYE---------TLSGSAE 215

Query: 234 G---KFDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
                +  +     E+  + + D  RK D +   T  GPHR D  +    ++ T    S 
Sbjct: 216 AIGVDYKPNAYPDDEDAYRAMLDRNRKRDEIMHSTSKGPHRDDFELTLNGRSAT-DFASD 274

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q+ + + +  A         G  P LL+D++   LD  +R   +  + D   Q+  TG
Sbjct: 275 GQQRSIALSLAFATIAYWRERFGVCPALLIDDVLGELDPVRRERFWNAL-DESIQLIATG 333

Query: 350 TD 351
           T+
Sbjct: 334 TE 335


>gi|219871719|ref|YP_002476094.1| recombination protein F [Haemophilus parasuis SH0165]
 gi|254790479|sp|B8F744|RECF_HAEPS RecName: Full=DNA replication and repair protein recF
 gi|219691923|gb|ACL33146.1| DNA replication and repair protein RecF [Haemophilus parasuis
           SH0165]
          Length = 361

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 153/342 (44%), Gaps = 22/342 (6%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I+ FRN  ++ L  +     F+G NG GKT++LEAI +L  G+ F+      + +     
Sbjct: 8   INNFRNLTAVDLELNHGFNFFIGANGSGKTSLLEAIFYLGHGKSFKSHISNRIIKYNQEE 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
            F+ F +++  E   + S+ L+ ++ +    L+IN    + + +L   L +  + P    
Sbjct: 68  -FTLFGKIQ--EEKHECSVGLQ-KNRQGETILRINGESNKKIADLAYLLPMQVITPEGLT 123

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
           + +G  + RR FLD  +F  +          +RL++ RN  L +    +      + +++
Sbjct: 124 LLNGGPIYRRAFLDWGLFHQNTDFYHNWNSLKRLLKQRNAALVQTRHYNE-LKPWDVELS 182

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           +    ++ +R   + +    I+ Y++K      P ++++ T F  G         + +YA
Sbjct: 183 KFAQIVSQSRAVYVES----ILTYIEKNCQFFLPELEITAT-FYQG------WEKERDYA 231

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLI 307
             L  G + D     T++GP ++D    +    + +    S G+ K+++  + LA     
Sbjct: 232 DLLAQGFERDRSVGYTMVGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQGEYF 289

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
                   I L+D+ ++ LD  K   L   +   GSQ+F+T 
Sbjct: 290 IAQKNRQCIFLIDDFASELDTQKCELLADRLYQSGSQVFVTA 331


>gi|237802507|ref|YP_002887701.1| recombination protein F [Chlamydia trachomatis B/Jali20/OT]
 gi|231273741|emb|CAX10521.1| DNA replication and repair protein [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 365

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 129/320 (40%), Gaps = 8/320 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRNY  LRL    +     G N  GKTN+LEA+  LS GR FR +   D 
Sbjct: 1   MRVHSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+  FF     +E +    ++   L  + D+  + +  +   I  + EL     +  
Sbjct: 61  IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  I  G   ERRRFLD ++     ++   +  + + +  RN  +     +    S
Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQ--NQKAIS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +  + +   G  +   R E    L+++            + L     L  +   +   + 
Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y ++L      D     T++GPHR +L++   D  +     S G++  +L  +  A  
Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVA-KFSSEGQKHSLLAVLRFAEC 292

Query: 305 RLISNTTGFAPILLLDEISA 324
             +       PIL +D+I A
Sbjct: 293 VYLQEEFCIHPILCMDDIHA 312


>gi|224538410|ref|ZP_03678949.1| hypothetical protein BACCELL_03304 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519969|gb|EEF89074.1| hypothetical protein BACCELL_03304 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 370

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 157/365 (43%), Gaps = 36/365 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F  +   F G NG+GKTN+L+AI FLS    F ++S      
Sbjct: 3   LKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAIYFLS----FCKSS------ 52

Query: 67  IGSP----------SFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            G+P           FF      E  +G L +I   ++ R  +  +  +      R+ D 
Sbjct: 53  -GNPIDSQNIRHDQEFFVIQGFYEAPDGTLEEIYCGMKRRQKKQFK--RNKKEYTRLSDH 109

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174
           +   L +  + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +
Sbjct: 110 IG-FLPLVMVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKS 168

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           E   +       E  MA+ G  +   R   I+    +   +    +    ++ LT     
Sbjct: 169 EVPVEEELFLIWEEMMAQAGEIVFRKREAFISEFIPIFQSFYSFISQDKEQVGLT----- 223

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +D    A        +   R  D +   +L G H+ +L +   D  I    GS G+ K 
Sbjct: 224 -YDSH--ARDASLLDVIKASRVRDQIMGYSLHGIHKDELNMLLGDFPIK-REGSQGQNKT 279

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353
            LV + LA    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++ 
Sbjct: 280 YLVALKLAQFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNRE 339

Query: 354 VFDSL 358
             D +
Sbjct: 340 HLDRI 344


>gi|170078873|ref|YP_001735511.1| recombination protein F [Synechococcus sp. PCC 7002]
 gi|226737845|sp|B1XJ90|RECF_SYNP2 RecName: Full=DNA replication and repair protein recF
 gi|169886542|gb|ACB00256.1| DNA repair and genetic recombination protein [Synechococcus sp. PCC
           7002]
          Length = 388

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/324 (22%), Positives = 151/324 (46%), Gaps = 23/324 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY    + F AQ TI +G+N  GK+N+LEA+  L+  +  R +  AD+ +
Sbjct: 3   LQTLHLRNFRNYQHQHVDFSAQKTILIGNNAQGKSNLLEAVELLASLKTHRTSRDADLVK 62

Query: 67  IGSPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLRIS 123
            G  +     AR++     G   +   L  R ++  R L++N +++ R +D L     + 
Sbjct: 63  QGEAT-----ARIQAQIQRGYGTVDFDLLLR-NQGGRTLKLNGEILRRQLDGLGTLNAVE 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TE 175
           +    +D +  G    RR+++D ++  ++P + R + +++++++ RN LL         +
Sbjct: 117 FSCLDLDLVRGGPDC-RRQWIDNLLIQLEPVYARILQEYQQVLKQRNALLRTAKKLHRNQ 175

Query: 176 GYFDSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
               +     +   + Q+A  G ++   R   +  L  L   + +  +     L +T   
Sbjct: 176 AAIPTDLTQQLTLWDLQLAATGSRVTRRRSRGLLRLMPLAQAWHRDISSQTETLEITYCP 235

Query: 233 DGKFDQ-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +  + Q     +++    K+   R+ +     +++GPHR D I    +      +GS G+
Sbjct: 236 NIPWQQDDPHHVQQACLDKIEQRRQAEQHQGSSMVGPHR-DEIEFSINGTPARFYGSQGQ 294

Query: 292 QKVVLVGIFLAHARLISNTTGFAP 315
           Q+ +++ + LA  +LI    G  P
Sbjct: 295 QRTLVLALKLAELQLIETIIGEPP 318


>gi|238765486|ref|ZP_04626405.1| DNA replication and repair protein recF [Yersinia kristensenii ATCC
           33638]
 gi|238696310|gb|EEP89108.1| DNA replication and repair protein recF [Yersinia kristensenii ATCC
           33638]
          Length = 323

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 138/325 (42%), Gaps = 14/325 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHEC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     RV+  E  + + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  AGFI-LHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQLLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD   F  +P       + +RL++ RN  L +     +   + + +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYAQIRAWDQE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +  L  +I+  R    +A+++ I         P   LS + F  G   +S      +Y +
Sbjct: 181 IIPLAERISEWRAAYSDAIAADISATCAL-FLPEFALSFS-FQRGWDKES------DYGE 232

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    + D     T +GPH++D  +   D        S G+ K+++  + LA    ++ 
Sbjct: 233 LLERQFERDRALTYTAVGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGEFLTR 291

Query: 310 TTGFAPILLLDEISAHLDEDKRNAL 334
            +G   + LLD+ ++ LD  +R  L
Sbjct: 292 QSGRRCLYLLDDFASELDTGRRRLL 316


>gi|227498786|ref|ZP_03928926.1| recombination protein F [Acidaminococcus sp. D21]
 gi|226904238|gb|EEH90156.1| recombination protein F [Acidaminococcus sp. D21]
          Length = 377

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 142/349 (40%), Gaps = 38/349 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           + +  FRNY  L +      T+  G N  GKTN+LE + + + G  FR     ++ + G 
Sbjct: 1   MRLHHFRNYGDLTMNLSHDLTVIYGRNAQGKTNLLEGLYYAAMGFSFRSRHDEELVKFGE 60

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
               +     +   G   + +K      R+ +  Q N   I   +     L +    P  
Sbjct: 61  TDCAAEVTYCDRY-GENRLLVKRIQEGKRTRKQAQRNGTPISPKEHYGS-LNLVLFTPDD 118

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL---------LTEGY--- 177
            ++  G    RRRFLD  +      +   + ++ R+++ RNR          L EG    
Sbjct: 119 LQLVKGDPSLRRRFLDMEIAQTSRFYYEALQNYNRVLQQRNRFLRHCRDQEKLDEGQLFV 178

Query: 178 FDSSWCSSIEA-------QMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKL 226
           +D +   S           M E+     +    +      + + Y+QK    E  P   L
Sbjct: 179 WDEALSRSAAVIVFERLKAMEEIERAAGLVYGTITQDREKMTLSYLQKRSDGEGVPPKGL 238

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           SL+ +      Q+F      Y ++L    ++D +   T +GPHR DL +    + +  + 
Sbjct: 239 SLSEW------QAF------YQEELKKRHRLDYVRGYTSMGPHRDDLEILQEGRPLR-SF 285

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
           GS G+Q+   + + L+    I ++    PILLLD++ + LDE +R  L 
Sbjct: 286 GSQGQQRTAALALKLSELEFIFHSKEEYPILLLDDVLSELDEGRRRMLL 334


>gi|258650275|ref|YP_003199431.1| DNA replication and repair protein RecF [Nakamurella multipartita
           DSM 44233]
 gi|258553500|gb|ACV76442.1| DNA replication and repair protein RecF [Nakamurella multipartita
           DSM 44233]
          Length = 380

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 157/360 (43%), Gaps = 26/360 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +++FR++ ++ +       + VG NG GKTN++EA+ +L+     R A+ A + R
Sbjct: 3   VRHLALTDFRSWPAVDVPLQPGVNVLVGRNGTGKTNLMEALGYLATLGSHRVATDAPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G      +  R   + G  ++ +++E   DR     +IN   +    +L   LR     
Sbjct: 63  SGC---TRSILRAAVVSGDRELLLEMEIARDRR-NTARINRAPLTRPRDLLGVLRTVLFA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYF----DSS 181
           P    +  G   ERRRFLD ++    PR      D++R+++ RN LL T G      D S
Sbjct: 119 PEDLALVRGDPTERRRFLDEVLMMRAPRLAGVKADYDRVLKQRNALLKTAGAARRTGDLS 178

Query: 182 WCSSIEAQMAELGVKINIARVEMINAL-SSLIMEYVQKENFPHI-----KLSLTGFLDGK 235
              + +  +   G ++  AR+ ++  L   +   Y        +     + ++    D  
Sbjct: 179 TLDAWDEHLVAAGAELIHARLALVAQLRPPVTAAYADVAGADQVVDLVYRSTVPLGPDPA 238

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRR------TLIGPHRSDL-IVDYCDKAITIAHGS 288
                 A+ +  A       ++  M  +       L+GPHR DL ++   D A    + S
Sbjct: 239 SAAGTIAVPDRAALAEAMLAELGRMRSKELERGICLVGPHRDDLELLLGTDPA--KGYAS 296

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+  + G  P+L+LD++ A LD  +R  L  +V     Q+ +T
Sbjct: 297 HGESWSFALALRLASFSLL-RSDGVDPVLILDDVFAELDAGRRGRLAELVAG-AEQVLIT 354


>gi|327334561|gb|EGE76272.1| RecF protein [Propionibacterium acnes HL097PA1]
          Length = 394

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 162/369 (43%), Gaps = 32/369 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   + R
Sbjct: 3   VERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           +G+           G +    + +++E    R+ R       + R   E+   LR     
Sbjct: 63  LGADQAVVRGRVRAGADDARSLLLEVEINARRANRARINRAPLTR-PREILGVLRTVVFS 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEGYF 178
           P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL        + G  
Sbjct: 122 PNDLAVVRGDPSDRRTFLDGLVMTRWPRMAAVKADYERVLKQRNALLKSLSGKGRSAGAE 181

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF------- 231
             +     + ++A +G ++  AR++ ++A+  L      +E  P   L+   +       
Sbjct: 182 IGATMDIWDDELATIGAELLSARLDTLSAVMPLT-SAAYREIAPVNDLATASYKSTIDLE 240

Query: 232 ------LDGKFDQSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKA 281
                  +GK  +     + E A +       R+ D + R  TL+GP R D+++ +  + 
Sbjct: 241 GLWSPPQEGKNPEPID--RNELAHRFLAALATRRADELIRGVTLVGPQRDDIVL-HIGEM 297

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V   
Sbjct: 298 PAKGYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ- 355

Query: 342 GSQIFMTGT 350
             Q+ +T  
Sbjct: 356 ADQVLVTAA 364


>gi|224023819|ref|ZP_03642185.1| hypothetical protein BACCOPRO_00535 [Bacteroides coprophilus DSM
           18228]
 gi|224017041|gb|EEF75053.1| hypothetical protein BACCOPRO_00535 [Bacteroides coprophilus DSM
           18228]
          Length = 374

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 158/362 (43%), Gaps = 29/362 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F  +    +G NG+GKTN+++A+ +LS    F +++   V  
Sbjct: 3   LKRISILNYKNLEQVDLAFSRKMNCIIGRNGMGKTNLMDAVYYLS----FCKSATNPVDS 58

Query: 67  IG---SPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                   FF      E  +G   ++   L+ R  +  +  +      +    L+ H+ +
Sbjct: 59  QNICHDQDFFVVQGFYETDDGDPEEVYCGLKRRQKKQFKRNK------KEYTRLSDHIGL 112

Query: 123 SWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYF 178
             LV   P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   
Sbjct: 113 IPLVMVSPADSLLIAGGSEERRRFMDVVISQFDREYLDALIRYNKALLQRNTLLKAEVEP 172

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           +    +  E  MA  G  +   R E I+    +   Y    +    ++SL          
Sbjct: 173 EEELMAVWEEAMAASGEVVYRKRREFIDEFIPVFQSYYSYISQGREQVSLA--------Y 224

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
              A +    + L   R+ D +   +L G H+ DLI+   D  I    GS G+ K  L+ 
Sbjct: 225 ESHAAEGNLLELLAASRQRDRIMGYSLKGVHKDDLIMQLGDFPIK-REGSQGQNKTYLIA 283

Query: 299 IFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD 356
           + LA    +  T +   PI+LLD+I   LD  +   + ++V  D   QIF+T T++   D
Sbjct: 284 LKLAQFEFLKRTGSHTTPIVLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRDHLD 343

Query: 357 SL 358
            +
Sbjct: 344 KI 345


>gi|189467918|ref|ZP_03016703.1| hypothetical protein BACINT_04310 [Bacteroides intestinalis DSM
           17393]
 gi|189436182|gb|EDV05167.1| hypothetical protein BACINT_04310 [Bacteroides intestinalis DSM
           17393]
          Length = 370

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 157/365 (43%), Gaps = 36/365 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F  +   F G NG+GKTN+L+AI FLS    F ++S      
Sbjct: 3   LKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAIYFLS----FCKSS------ 52

Query: 67  IGSP----------SFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDE 115
            G+P           FF      E ++G   +I   ++ R  +  +  +      R+ D 
Sbjct: 53  -GNPIDSQNIRHDQEFFVIQGFYEALDGTPEEIYCGMKRRQKKQFK--RNKKEYTRLSDH 109

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174
           +   L +  + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +
Sbjct: 110 IG-FLPLVMVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKS 168

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           E   +       E  MA+ G  +   R   I+    +   +    +    ++ LT     
Sbjct: 169 EVPVEEELFLIWEEMMAQAGEIVFRKREAFISEFIPIFQSFYSFISQDKEQVGLT----- 223

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +D    A        +   R  D +   +L G H+ +L +   D  I    GS G+ K 
Sbjct: 224 -YDSH--ARDASLLDVIKASRVRDQIMGYSLHGIHKDELNMLLGDFPIK-REGSQGQNKT 279

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353
            LV + LA    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++ 
Sbjct: 280 YLVALKLAQFDFLKRTGTAVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNRE 339

Query: 354 VFDSL 358
             D +
Sbjct: 340 HLDRI 344


>gi|255348438|ref|ZP_05380445.1| recombination protein F [Chlamydia trachomatis 70]
 gi|255502980|ref|ZP_05381370.1| recombination protein F [Chlamydia trachomatis 70s]
 gi|255506650|ref|ZP_05382289.1| recombination protein F [Chlamydia trachomatis D(s)2923]
 gi|296438380|gb|ADH20533.1| recombination protein F [Chlamydia trachomatis E/11023]
          Length = 365

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 130/320 (40%), Gaps = 8/320 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRNY  LRL    +     G N  GKTN+LEA+  LS GR FR +   D 
Sbjct: 1   MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+  FF     +E +    ++   L  + D+  + +  +   I  + EL     +  
Sbjct: 61  IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  I  G   ERRRFLD ++     ++ + +  + + +  RN  +     +    S
Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTQHISLYHKALDQRNASIKAQ--NQKAIS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +  + +   G  +   R E    L+++            + L     L  +   +   + 
Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y ++L      D     T++GPHR +L++   D  +     S G++  +L  +  A  
Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVA-KFSSEGQKHSLLAVLRFAEC 292

Query: 305 RLISNTTGFAPILLLDEISA 324
             +       PIL +D+I A
Sbjct: 293 VYLQEEFCIHPILCMDDIHA 312


>gi|225621318|ref|YP_002722576.1| putative recombinational DNA repair ATPase [Brachyspira
           hyodysenteriae WA1]
 gi|225216138|gb|ACN84872.1| putative recombinational DNA repair ATPase (RecF pathway)
           [Brachyspira hyodysenteriae WA1]
          Length = 355

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 164/374 (43%), Gaps = 35/374 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRNY      F  +  +  G NG GKTNILEAI  L  G  FR     ++ +
Sbjct: 3   LKELTLRSFRNYNENIFEFSDKINVLYGHNGCGKTNILEAIYMLGNGVSFRTRLDRELVK 62

Query: 67  IGSPSFF-STFARVEGMEGLADISIKLETR------DDRSVRCLQINDVVIRVVDELNKH 119
            G+ ++F     R + +    +I I  + +      D + V   +  D++ R+       
Sbjct: 63  NGNDNYFLRGVFREDELNYDTNIEIAYQKKIKKVFIDKKEVSSRK--DLIGRI------- 113

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TE 175
           L + +L    D + +   + RR + + ++  I   +   +I + +L++ RN  L     E
Sbjct: 114 LYVIFLPNDTDLVIAEPKL-RRDYFNMLISTISSEYLIALIKYNKLLKMRNICLNTKPNE 172

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
            Y  +S  + +   +A    K +    E +N +   I      EN   IK   T  ++  
Sbjct: 173 AYIYNSDIAKLSLYIANENKKYSALLEEKMNEIYKNIF---NDENPYAIKYQST--IEDI 227

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            +++      EY KKL    +       T  G HR++    Y + +++    S GE+++ 
Sbjct: 228 LNEN------EYIKKLETTLQEQIRMHTTYFGIHRAEYQFFYKN-SLSKKFSSQGEKRMF 280

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            + + LA  +++S     +PILL+D+    LD  +R+ +   +  +G Q+F+T T+K   
Sbjct: 281 TLIMKLASEKILSEYRKKSPILLIDDAMLELDNTRRDNILEYIKTLG-QVFITVTEKEKV 339

Query: 356 DSLNETAKFMRISN 369
            +  E  K   I N
Sbjct: 340 KNF-ENGKVFDIPN 352


>gi|21326651|gb|AAL30091.1| RecF protein [Xanthomonas campestris pv. campestris]
          Length = 391

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 156/385 (40%), Gaps = 56/385 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++     +   +  GDNG GKT++LEA+  ++ GR F        
Sbjct: 24  MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSF-------- 75

Query: 65  TRIGSPSFFSTFARV-EGM--EGLADISIKLETRD------DRSVRC------------L 103
                        RV +G+  +G  D+ I +E R+      +R+ R             L
Sbjct: 76  -----------LGRVRDGLIRQGGQDLEIFVEWRERAGDSTERTRRAGLRHSGQEWTGRL 124

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
              DV    +  L   L +    P    + SG    RRRFLD  +F ++P        + 
Sbjct: 125 DGEDVA--QLGSLCAALAVVTFEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYA 182

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R ++ RN LL +G        + + ++AE G  +   R++ +  L   ++  V     P 
Sbjct: 183 RALKQRNALLKQGA-QPQMLDAWDHELAESGETLTSRRLQYLERLQERLVP-VATAIAPS 240

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL--IVDYCDKA 281
           + LS   F  G             A  L   R+ D  +  T  GPHR+D   + D     
Sbjct: 241 LGLSALTFAPGWRRHEVS-----LADALLLARERDRQNGYTSQGPHRADWAPLFDALPGK 295

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
             +   S G+ K+  +   LA A   ++  G  PI+ LD++ + LD   +  + + +   
Sbjct: 296 DAL---SRGQAKLTALACLLAQAEDFAHERGEWPIMALDDLGSELDRHHQARVIQRLASA 352

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMR 366
            +Q+ +T T+  +   L +  K +R
Sbjct: 353 PAQVLITATE--LPPGLADAGKTLR 375


>gi|33241177|ref|NP_876119.1| recombinational DNA repair ATPase (RecF pathway) [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|33238707|gb|AAQ00772.1| Recombinational DNA repair ATPase (RecF pathway) [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 355

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 151/338 (44%), Gaps = 24/338 (7%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
           + +G NG GK+N+LEA+  L   R  R +S  D+   G+     + A V  +    +  +
Sbjct: 9   LVIGPNGAGKSNLLEAVELLGSLRSHRSSSDQDLIHWGA-----SEAVVRAITS-DEEKL 62

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           +LE R     +  +    + R +D L   LR          +  G  + RR +LDR+V  
Sbjct: 63  QLEFRKLGGRKASRNGKSLARQLDLLGS-LRCVGFSALDLSLVRGEPLLRRNWLDRVVQQ 121

Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSS------WCSSIEAQMAELGVKINIARVEM 204
           ++P +   +  F RL+R RN+L  + + D S         + ++QMA +  +I+  R+  
Sbjct: 122 LEPVYGDLITRFNRLLRQRNQLWRQ-WKDRSKDEHYALLDAFDSQMALVSTRIHRRRIRA 180

Query: 205 INALSSLIMEYVQ-----KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
           +  L  +   + +     KE+   +K      L+G+ ++   A +    K+L + R  + 
Sbjct: 181 LKHLGPIAATWQKRLSKGKEDL-ELKYHPGSILEGEEEE--LAWRLTIEKQLAEQRNEEE 237

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
                 +GPHR +++    +       GS G+Q+ +++ + LA    +       PILLL
Sbjct: 238 RLGICKVGPHRDEVLF-LLNGVPARKFGSAGQQRTLVLALKLAELEFVGEMYKDPPILLL 296

Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           D++ A LD  ++  L   V D   Q  ++ T    F+ 
Sbjct: 297 DDVFAELDPIRQLLLLEAVGD-NHQCLISATHLDAFEG 333


>gi|183980038|ref|YP_001848329.1| DNA replication and repair protein RecF [Mycobacterium marinum M]
 gi|226737814|sp|B2HI48|RECF_MYCMM RecName: Full=DNA replication and repair protein recF
 gi|183173364|gb|ACC38474.1| DNA replication and repair protein RecF [Mycobacterium marinum M]
          Length = 385

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 32/364 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A   L      T+FVG NG GKTNI+EA+ + +     R  + A + R
Sbjct: 3   VRHLGLRDFRSWAHADLELGPGRTVFVGPNGFGKTNIIEALWYSATLGSHRVGTDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    +G E     ++ LE    R+ +  ++N   +R   E+   LR    
Sbjct: 63  AGADRAVISTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   +RRR+LD +     P       D+++++R R  LL            
Sbjct: 118 APEDLALVRGDPADRRRYLDDLATLRRPTIAGVRADYDKVLRQRTALLKSVSGARFRGDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLT 229
           G  D+      ++++A+ G ++  AR++++  L+  + +  Q      +      + S+ 
Sbjct: 178 GALDT--LDVWDSRLAQHGAELMAARIDLVRLLAPEVEKAYQLLAPESRSAAIAYRASMD 235

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT-LIGPHRSDLIVDYCDKAIT--IAH 286
            F+            EE        R+   + R   L+GPHR DL +   D+      +H
Sbjct: 236 AFVAADDAAPDRVTLEEGLLAALAARRDAELERGVCLVGPHRDDLELRLGDQPAKGFASH 295

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           G +      +       A  +    G  P+LLLD++ A LD  +R AL R V +   Q+ 
Sbjct: 296 GESWS----MAVALRLAAFALLRADGSEPVLLLDDVFAELDAARRTALAR-VAESAEQVL 350

Query: 347 MTGT 350
           +T  
Sbjct: 351 VTAA 354


>gi|254507276|ref|ZP_05119412.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           16]
 gi|219549736|gb|EED26725.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           16]
          Length = 360

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 155/365 (42%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +   
Sbjct: 6   LIIKQFRNIEACDINLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNDC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  NELFVHGRFLNSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +     RR F+D  VF  +         F+RL + RN LL     Y + S+   
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRELSYW-- 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + +MA L   I+  R   +  + S   E  Q    P   + L  +    +D+     + 
Sbjct: 179 -DQEMARLAENISQWRSVYVEQMKSKAEEICQT-FLPEFDIQLKYYRG--WDK-----ET 229

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            Y + L    + D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 230 PYQQILEKNFERDQALGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   + L+D+ ++ LD  +R  L   + + G+Q+F++  T   + D  +E  K 
Sbjct: 289 HLTEMTGKQCVYLIDDFASELDSQRRERLADCLKETGAQVFVSSITQSQIADMADENGKM 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|29349663|ref|NP_813166.1| DNA repair protein RecF [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569966|ref|ZP_04847375.1| DNA replication and repair protein recF [Bacteroides sp. 1_1_6]
 gi|298383927|ref|ZP_06993488.1| RecF protein [Bacteroides sp. 1_1_14]
 gi|51316448|sp|Q89ZW6|RECF_BACTN RecName: Full=DNA replication and repair protein recF
 gi|29341573|gb|AAO79360.1| DNA replication and repair protein RecF, ABC family ATPase
           [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840347|gb|EES68429.1| DNA replication and repair protein recF [Bacteroides sp. 1_1_6]
 gi|298263531|gb|EFI06394.1| RecF protein [Bacteroides sp. 1_1_14]
          Length = 369

 Score = 75.9 bits (185), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 157/364 (43%), Gaps = 34/364 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + + F A+   F G NG+GKTN+L+A+ FLS    F ++S   +  
Sbjct: 3   LKRISILNYKNLEQVEIGFSAKLNCFFGQNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58

Query: 67  IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                   FF      E  +G  + I   ++ R  +  +  +      R  D +   L +
Sbjct: 59  QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
             + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +  
Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFPVEEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  MA+ G  +   R   I             E F  I  S   F+    +Q   
Sbjct: 176 LFLVWEEMMAQAGEIVFRKREAFI-------------EEFIPIFQSFYSFISQDKEQVGL 222

Query: 242 ALKEEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           +  + +A+       L   R+ D +   +L G H+ +L +   D  I    GS G+ K  
Sbjct: 223 SY-DSHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGDFPIK-KEGSQGQNKTY 280

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSV 354
           LV + LA    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++  
Sbjct: 281 LVALKLAQFDFLKRTGQTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREH 340

Query: 355 FDSL 358
            D +
Sbjct: 341 LDRI 344


>gi|76788787|ref|YP_327873.1| recombination protein F [Chlamydia trachomatis A/HAR-13]
 gi|237804423|ref|YP_002888577.1| recombination protein F [Chlamydia trachomatis B/TZ1A828/OT]
 gi|97180699|sp|Q3KMU7|RECF_CHLTA RecName: Full=DNA replication and repair protein recF
 gi|76167317|gb|AAX50325.1| RecF [Chlamydia trachomatis A/HAR-13]
 gi|231272723|emb|CAX09627.1| DNA replication and repair protein [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 365

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 129/320 (40%), Gaps = 8/320 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRNY  LRL    +     G N  GKTN+LEA+  LS GR FR +   D 
Sbjct: 1   MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+  FF     +E +    ++   L  + D+  + +  +   I  + EL     +  
Sbjct: 61  IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  I  G   ERRRFLD ++     ++   +  + + +  RN  +     +    S
Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQ--NQKAIS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +  + +   G  +   R E    L+++            + L     L  +   +   + 
Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y ++L      D     T++GPHR +L++   D  +     S G++  +L  +  A  
Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVA-KFSSEGQKHSLLAVLRFAEC 292

Query: 305 RLISNTTGFAPILLLDEISA 324
             +       PIL +D+I A
Sbjct: 293 VYLQEEFCIHPILCMDDIHA 312


>gi|300934347|ref|ZP_07149603.1| recombination protein F [Corynebacterium resistens DSM 45100]
          Length = 452

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 158/380 (41%), Gaps = 69/380 (18%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP-SFFSTFARVEGMEGLADI 88
           +IF G NG GKTNI+EA+ +L+     R  S + + R G   +  S  A  +G E    +
Sbjct: 2   SIFSGPNGHGKTNIVEALGYLAHLGSHRVTSDSALVREGQKLASISATAVNDGRE----L 57

Query: 89  SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
           S  L  R   + R   IN   +R   ++   +R +   P    +  G   +RR FLD ++
Sbjct: 58  STHLAIRASGANRAY-INRTAMRSPRDILGIVRTTLFSPEDLALIRGEPEQRRNFLDTIM 116

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----------------------------D 179
            A  PR      D+++ +R RN LL    F                              
Sbjct: 117 LARYPRLAGVKADYDKALRQRNALLRNSSFVLRHLTESPSQASSNRSTDDSSEIKGAHSR 176

Query: 180 SSWCSSIEA----------QMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKL 226
           SS+ S  E+          Q+A LG +I  ARV++++ LS  + +  Q+   E+ P   +
Sbjct: 177 SSFLSDAESALATLDVWDGQLAALGGQIMSARVQIVHDLSPHVAKTYQRLAPESRP-AHM 235

Query: 227 SLTGFLDGKF------------DQSFCALKEEYAK----KLFDGRKMDSMSR-RTLIGPH 269
           + T  +D +              +    L  E A+    + F  ++   + R  TL+GPH
Sbjct: 236 AYTSTIDAQLADFGVQLGKSVPGEPTALLSPEVAEATLLRAFAEKRPHEIDRGTTLLGPH 295

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           R D+      +       S GE     + + L  A  +  + G  PI++LD++ A LD +
Sbjct: 296 RDDVTFTLGTQPAK-GFASHGESWSFALSLRLG-AYFMGRSDGTEPIVILDDVFAELDRN 353

Query: 330 KRNALFRIVTDIGSQIFMTG 349
           +R  L  ++ D   Q+ +T 
Sbjct: 354 RRRKLVDLLED-AEQVLITA 372


>gi|167855650|ref|ZP_02478408.1| recombination protein F [Haemophilus parasuis 29755]
 gi|167853222|gb|EDS24478.1| recombination protein F [Haemophilus parasuis 29755]
          Length = 361

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 154/345 (44%), Gaps = 28/345 (8%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I+ FRN  ++ L  +     F+G NG GKT++LEAI +L  G+ F+      + +     
Sbjct: 8   INNFRNLTAVDLELNHGFNFFIGANGSGKTSLLEAIFYLGHGKSFKSHISNRIIKYNQEE 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
            F+ F +++  E   + S+ L+ ++ +    L+IN    + + +L   L +  + P    
Sbjct: 68  -FTLFGKIQ--EEKHECSVGLQ-KNRQGETILRINGESNKKIADLAYLLPMQVITPEGLT 123

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFD-SSWCSSIEA 188
           + +G  + RR FLD  +F  +          +RL++ RN  L  T  Y +   W    + 
Sbjct: 124 LLNGGPIYRRAFLDWGLFHQNTDFYHNWNSLKRLLKQRNAALVQTRHYNELKPW----DV 179

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSFCALKE 245
           ++++    ++ +R       +  I+ Y++K      P ++++ T F  G         + 
Sbjct: 180 ELSKFAQIVSQSRA----VYAESILTYIEKNCQFFLPELEITAT-FYQG------WEKER 228

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHA 304
           +YA  L  G + D     T++GP ++D    +    + +    S G+ K+++  + LA  
Sbjct: 229 DYADLLAQGFERDRSVGYTMVGPQKADF--RFRANGLPVEDVLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
                      I L+D+ ++ LD  K   L   +   GSQ+F+T 
Sbjct: 287 EYFIAQKNRQCIFLIDDFASELDTQKCELLADRLYQSGSQVFVTA 331


>gi|309799251|ref|ZP_07693499.1| DNA replication and repair protein RecF [Streptococcus infantis
           SK1302]
 gi|308117096|gb|EFO54524.1| DNA replication and repair protein RecF [Streptococcus infantis
           SK1302]
          Length = 214

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 6/209 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+I +FRNY    + F+ +  +FVG N  GKTN+LE+I FL+  R  R  +  ++ +
Sbjct: 3   LKKLSIKQFRNYQDTEIEFNPKLNVFVGRNAQGKTNLLESIYFLALTRSHRTKTDKNLIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F     +V G+      ++ LE       R  ++N +    + +   H+ +    
Sbjct: 63  -----FEEQQLQVSGILQKRTTTVPLEIDLTPKGRITKVNHLKQARLSDYIGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L +    D ++ S 
Sbjct: 118 PEDLQLVKGAPAIRRKFIDMELGQIKPIYLSDLSSYNHVLKQRNTYLKSANQIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIME 214
           ++ Q+ + G ++ + R E I   S L+++
Sbjct: 178 LDDQLVDYGCRVMVHREEFIKKWSLLVVK 206


>gi|291288760|ref|YP_003505576.1| Recombinational DNA repair ATPase (RecF pathway)- like protein
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885920|gb|ADD69620.1| Recombinational DNA repair ATPase (RecF pathway)- like protein
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 340

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 159/359 (44%), Gaps = 36/359 (10%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRAS 60
           TNR++I  LN   FRN+  +  ++D ++  ++ GDNG GKT++LE++  L   + FR+ +
Sbjct: 3   TNRVRI--LN---FRNH--IDSLYDFENINYIEGDNGTGKTSVLESLFVLFNLKSFRQQT 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
                R     F  +   ++G     D       R + S         V    + L+ H 
Sbjct: 56  VKKAIRFKQDFFLVSAKCLDG-----DFQRTFHYRYETSAELKDDEGKVSGKAEYLSMHP 110

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            I +  P   ++ S    +RRRF+DR+ F ID  H  R+ D  +L   +   L +   + 
Sbjct: 111 VICY-SPEYGQVVSDDQDDRRRFIDRLSFQIDRGHFDRLTDLRKLNLMKVSELKKDRLNR 169

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFD-Q 238
           ++  S+  ++ EL  KI+  R       +  I +++ ++ +  +     GF DG + D +
Sbjct: 170 AYIDSVNEKIVELSEKISGTR----ECTAGQINDHM-RQTYAEL-----GFDDGFRLDFR 219

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S    K    K++ D        RR L G  R D      D  +     S G++K  ++ 
Sbjct: 220 SNVKDKNLLLKEIVD--------RRLLYGSSR-DRFYSVSDGRVYDRFSSFGQKKTFVLI 270

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
              +  +L+        I LLD+  A LD+ +   LF +  D  +QIF+TG   + F S
Sbjct: 271 TLASGLKLLEKNGKNGIITLLDDFEAGLDKSRIERLFHLF-DTSAQIFITGVKNTNFSS 328


>gi|160887072|ref|ZP_02068075.1| hypothetical protein BACOVA_05088 [Bacteroides ovatus ATCC 8483]
 gi|260171615|ref|ZP_05758027.1| DNA repair protein RecF [Bacteroides sp. D2]
 gi|315919929|ref|ZP_07916169.1| DNA replication and repair protein recF [Bacteroides sp. D2]
 gi|156107483|gb|EDO09228.1| hypothetical protein BACOVA_05088 [Bacteroides ovatus ATCC 8483]
 gi|313693804|gb|EFS30639.1| DNA replication and repair protein recF [Bacteroides sp. D2]
          Length = 372

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 160/365 (43%), Gaps = 36/365 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS    F ++S   +  
Sbjct: 3   LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58

Query: 67  IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                   FF      E  +G  + I   ++ R  +  +  +      R  D +   L +
Sbjct: 59  QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
             + P+   + +G S ERRRF+D ++   D  +   +I + +++  RN LL +E   +  
Sbjct: 116 VMVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKVLAQRNTLLKSEFPVEEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  MA+ G  +   R        + I E++       I  S   F+    D+   
Sbjct: 176 LFLVWEEMMAQAGAIVFQKR-------EAFIREFIP------IFQSFYSFISQ--DKEVV 220

Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            L  E +A+       L   R+ D +   +L G H+ +L +   +  I    GS G+ K 
Sbjct: 221 GLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 279

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353
            LV + LA    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++ 
Sbjct: 280 YLVALKLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRG 339

Query: 354 VFDSL 358
             D +
Sbjct: 340 HLDRI 344


>gi|317131012|ref|YP_004090326.1| DNA replication and repair protein RecF [Ethanoligenens harbinense
           YUAN-3]
 gi|315468991|gb|ADU25595.1| DNA replication and repair protein RecF [Ethanoligenens harbinense
           YUAN-3]
          Length = 375

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 158/378 (41%), Gaps = 32/378 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  FRN     L  D    IF G N  GKTN+LEAI   +  R FR A  +++    +
Sbjct: 6   LSLQGFRNLEQTVLEPDPSVNIFYGQNAQGKTNLLEAIWLFTGARSFRGAKDSELVGFQA 65

Query: 70  PSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                   F+   R++           L  R+ R  R  ++NDV ++    L+       
Sbjct: 66  EKADLSLSFTAGGRLQ--------EAVLSIREGR--RYARLNDVPLQSPAGLSGEFCAVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +       RR FLD  +  + PRH   +  + + +  RN LL +         
Sbjct: 116 FSPEHLSLVKDGPSVRRAFLDEAICPLRPRHAAILAAYHKALIQRNALLKDIPHHMDLLD 175

Query: 185 SIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS--------LTGFLD 233
           +++    ++ +LG  I  AR+  +  L        Q  +  H + +        L   LD
Sbjct: 176 TLDVWDERVGKLGAAILHARLRYLARLLPKAERLHQSISNSHEQAAFRYESAKGLQNVLD 235

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                +   +++     + + R+ D  +  T +GPHR DL +   ++    +  S G+Q+
Sbjct: 236 DPGRHA-SEIEQALRAAMRERRRADLETGVTGVGPHRDDLTISVAERPAR-SFASQGQQR 293

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
              + + LA A ++++  G  P+LLLD++ + LD  +R+ L   +   G+Q+F+T  D  
Sbjct: 294 TAALALKLAEAEVLTDVMGEPPVLLLDDVFSELDGSRRDYLMHHID--GAQVFITCCDPQ 351

Query: 354 VFDSLNETAKFMRISNHQ 371
              S         +SN Q
Sbjct: 352 ELAS--SAGAVFSLSNGQ 367


>gi|254412109|ref|ZP_05025884.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181075|gb|EDX76064.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 382

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 173/367 (47%), Gaps = 23/367 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L + +FRNY    + F+A  TI VG+N  GK+N+LEA+  LS  +  R     ++  
Sbjct: 3   LKCLKLRQFRNYRDCLVNFEAPKTILVGNNAQGKSNLLEAVELLSTLKSHRSGRDREMV- 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           +   S     A +E   G  ++ + L ++  R+V      + + R +D L     + +  
Sbjct: 62  LEDASMGQIQALLERAYGSVELGLTLRSQGRRTVAL--NRESLRRQLDFLGILNAVQFSS 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----------TE 175
             +D +  G    RR +LD ++  ++P +   +  + +++R RN LL            E
Sbjct: 120 LDLD-LVRGSPERRRNWLDSILTQLEPIYAYILQQYNQVLRQRNALLKTIRKQEEERTPE 178

Query: 176 GYFDSSWCSSI---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           G       + +   +AQ+A  G ++   R  ++  L+ L   +    +     L +T   
Sbjct: 179 GVISKQPQTELALWDAQLATAGSRVTRRRARVLQRLAPLAQSWHSSISGKTELLEVTYAP 238

Query: 233 DGKFDQSFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTG 290
           +   ++    A+++ +  KL   R  +     TL+GPHR D  V++  ++    ++GS G
Sbjct: 239 NVNLEKDDPEAVQQAFLDKLHHRRFPEQRQGITLVGPHRDD--VEFTINQTPARSYGSQG 296

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+ +++ + LA  +LI    G  P+LLLD++ A LD +++N L   + D   Q  +T T
Sbjct: 297 QQRTLVLALKLAELKLIEEVVGEPPLLLLDDVLAELDPNRQNQLLDAIQD-RFQTLITTT 355

Query: 351 DKSVFDS 357
               FD+
Sbjct: 356 HLGAFDA 362


>gi|260771049|ref|ZP_05879977.1| DNA recombination and repair protein RecF [Vibrio furnissii CIP
           102972]
 gi|260613938|gb|EEX39129.1| DNA recombination and repair protein RecF [Vibrio furnissii CIP
           102972]
 gi|315178624|gb|ADT85538.1| DNA replication and repair protein RecF [Vibrio furnissii NCTC
           11218]
          Length = 359

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 159/365 (43%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN  +  +   +     +G NG GKT++LEAI  L  GR F+      V +   
Sbjct: 6   LIVQQFRNIKACDIPLSSGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSTLTGRVIQNEC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D S   ++I     + + +L + L +  + P
Sbjct: 66  SELFVHGRFLTSDQFE----LPIGINKQRDGSTE-VKIGGQSGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +    +RR F+D  VF  +         F+RL + RN LL     Y + S+   
Sbjct: 121 EGFELLTDGPKQRRAFIDWGVFHTEVAFFDAWGRFKRLNKQRNALLKTASSYRELSYWDQ 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             A++AE   +   A VE +      + E + +   P  +++L  +   + +  +     
Sbjct: 181 ELARLAENIDQWRGAYVEQMKR----VAEELCRTFLPEFEITLKYYRGWEKETPY----H 232

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E  +K F+    D +   T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 233 EILQKNFE---RDQLLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D +   +K 
Sbjct: 289 HLTELTGKQCIYLIDDFASELDSQRRKRLADCLKATGAQVFVSSITESQVADMVEPNSKM 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|289525119|emb|CBJ14590.1| DNA replication and repair protein [Chlamydia trachomatis Sweden2]
 gi|296434663|gb|ADH16841.1| recombination protein F [Chlamydia trachomatis E/150]
          Length = 365

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 129/320 (40%), Gaps = 8/320 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRNY  LRL          G N  GKTN+LEA+  LS GR FR +   D 
Sbjct: 1   MRVLSLFLKDFRNYTDLRLELGPDMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+  FF     +E +    ++   L  + D+  + +  +   I  + EL     +  
Sbjct: 61  IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  I  G   ERRRFLD ++     ++ + +  + + +  RN  +     +    S
Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTQHISLYHKALDQRNASIKAQ--NQKAIS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +  + +   G  +   R E    L+++            + L     L  +   +   + 
Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y ++L      D     T++GPHR +L++   D  +     S G++  +L  +  A  
Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVA-KFSSEGQKHSLLAVLRFAEC 292

Query: 305 RLISNTTGFAPILLLDEISA 324
             +       PIL +D+I A
Sbjct: 293 VYLQEEFCIHPILCMDDIHA 312


>gi|300112750|ref|YP_003759325.1| DNA replication and repair protein RecF [Nitrosococcus watsonii
           C-113]
 gi|299538687|gb|ADJ27004.1| DNA replication and repair protein RecF [Nitrosococcus watsonii
           C-113]
          Length = 362

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 147/352 (41%), Gaps = 31/352 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L++  FRN     L       +  G N  GKT+ LEAI  L  GR FR        +
Sbjct: 3   ITHLDVRNFRNLKHTELHPAKGVNVLSGANSSGKTSFLEAIYLLGLGRSFRTVQLISTVQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  S     A+V+   G     ++      R+    + N   ++   +L   L + ++ 
Sbjct: 63  TGMESL-RVVAKVKQAGGSYITGVEFGPNGFRA----RTNGSTVKKRSQLATQLPLLYM- 116

Query: 127 PSMDRI-FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           PS   I   G    RR++LD  +F ++P        ++R ++ RN  L       SW   
Sbjct: 117 PSYSHIMLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHALR--VHKPSWRQE 174

Query: 186 IEA---QMAELGVKINIARVEMI----NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           I     +++  G +I   R  ++    +++S L M  V +   P  ++++      +F Q
Sbjct: 175 INVWNKKLSTYGEQITSLREAILFKLRDSVSQLFMALVHQ---PLARVTM------EFKQ 225

Query: 239 SFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
            +   A  EE   +  +    D ++  T  GPHR++ +  Y D        S G+QK+  
Sbjct: 226 GWTRTAGLEEILNETLN---YDRVTGYTRYGPHRAE-VAFYVDGKDVREILSRGQQKIFC 281

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
             + L+ A L+        + L+D+ ++ LD D R     ++  +G Q+F T
Sbjct: 282 YSLALSQADLLCRIKEQNCVFLMDDFASELDIDHRKRFLALLNKLGIQVFAT 333


>gi|299148571|ref|ZP_07041633.1| RecF protein [Bacteroides sp. 3_1_23]
 gi|298513332|gb|EFI37219.1| RecF protein [Bacteroides sp. 3_1_23]
          Length = 372

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 159/365 (43%), Gaps = 36/365 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS    F ++S   +  
Sbjct: 3   LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58

Query: 67  IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                   FF      E  +G  + I   ++ R  +  +  +      R  D +   L +
Sbjct: 59  QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
             + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +  
Sbjct: 116 VMVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFSVEEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  MA+ G  +   R        + I E++       I  S   F+    D+   
Sbjct: 176 LFLVWEEMMAQAGAIVFQKR-------EAFIREFIP------IFQSFYSFISQ--DKEVV 220

Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            L  E +A+       L   R+ D +   +L G H+ +L +   +  I    GS G+ K 
Sbjct: 221 GLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 279

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353
            LV + LA    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++ 
Sbjct: 280 YLVALKLAQFDFLKRTGWTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRG 339

Query: 354 VFDSL 358
             D +
Sbjct: 340 HLDRI 344


>gi|269217832|ref|ZP_06161686.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269212767|gb|EEZ79107.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 453

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 105/217 (48%), Gaps = 13/217 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +++FR+Y    +      T+ VG+NG GKTN++EA+ +LS     R +  A + R G+
Sbjct: 6   LALTDFRSYERAIVALKPGVTVLVGENGQGKTNLIEAVGYLSTLSSHRVSGDAALVRQGA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +     ARV  +   A  ++++E    R+ R  +IN  ++R   E+   +R     P  
Sbjct: 66  TAAV-VQARV--VRSSAPTTVEVEIYSGRANRA-RINRGLVR-PPEIVGTVRSVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------GYFDSS 181
             + SG    RR FLDR++  + PR      +++R  R R  LL          G  D++
Sbjct: 121 LELVSGDPAARRSFLDRIMVQLRPRMVAVKSEYDRAARQRAALLKSAGAARRGGGSADAA 180

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
                + Q+A+LG +I  AR E++  L   + E+  K
Sbjct: 181 ALDVWDVQLAKLGARITAARAEIVARLRPRVDEFYAK 217


>gi|237784640|ref|YP_002905345.1| DNA replication and repair protein RecF [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757552|gb|ACR16802.1| DNA replication and repair protein RecF [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 429

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 151/373 (40%), Gaps = 39/373 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  FR++  L L      T+F G NG GKTN++EA+ +++     R ++ A + R
Sbjct: 3   IRALQLRNFRSWPELDLHLGPGITVFSGPNGHGKTNVVEALDYVAHLGSHRVSTDAPLVR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +  S  A   G E  A + IK      R     QIN    +   +L   ++    
Sbjct: 63  EGREYTTVSATAINSGRELTAHMLIKA-----RGSNKAQINRAPCKSPRQLLGIVKTVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN-------RLLTEGYF 178
            P    +  G    RRRFLD ++    PR      D+++++R RN       R L +GY 
Sbjct: 118 SPEDLALVRGEPEHRRRFLDDLLIGRFPRWAGTRSDYDKILRQRNTLLKRASRTLRQGYG 177

Query: 179 DSSWCSSI-------EAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFP-HIKLS 227
             +   S        ++ +A  G ++   R+ + + LS  +    Q+   E+ P  I   
Sbjct: 178 GGNDSDSALDTLDTWDSHLAAAGAQVMAQRIVLAHVLSPYVKNAYQRLAPESRPAQITYR 237

Query: 228 LT---GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIV 275
            T     ++        A     A  + +   +  ++RR         +  GPHR D+ +
Sbjct: 238 STVDKALVEAGITPETVANDVAGATPVIEAVLLSELARRRDTDIQRGTSTCGPHRDDVEL 297

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                     + S GE     + + LA         G  PIL+LD++ A LD  +R AL 
Sbjct: 298 -LLGTQPARGYASHGESWSFALALRLASFEW-QREQGTDPILILDDVFAELDAARRRALA 355

Query: 336 RIVTDIGSQIFMT 348
            +  D   Q  +T
Sbjct: 356 TVAKD-AEQTLVT 367


>gi|313671973|ref|YP_004050084.1| smc domain protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938729|gb|ADR17921.1| SMC domain protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 335

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 156/347 (44%), Gaps = 26/347 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + +  FRN+ +    FD ++ I  G NG GKT+ILE+IS +  G+ F+      +  
Sbjct: 3   LKDIKLRNFRNHINSIFSFDIKNYI-TGKNGSGKTSILESISLIFTGKSFKTNKLKSIIN 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           I   +FF   +         DI++  +T+     + L IN      +     +  + +  
Sbjct: 62  I-DKNFFEISSNFSDDNVNYDITLYYDTK-----KRLTINGKRPENIINFYHNHPVIFYS 115

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P  +   S     RR FLDR +F +D  +   ++ + +L+  + + + +   DS    SI
Sbjct: 116 PENEGFLSKEQEIRRNFLDRSIFYLDISYIDSLLGYNKLLELKKKYILKDVKDSLLYKSI 175

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
             +M+     I   R  +I + ++ I +Y++  + P +    T F       S   +   
Sbjct: 176 HEKMSNYIKDIQNKRSNLIKSFNTYIEKYLR--DIPSLN---TEFF------SLSYIPNH 224

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAHAR 305
             + L D    + + ++ L GPHR  +  +   ++   IA  S G++K + +       +
Sbjct: 225 LDEDLLDK---ELILKKVLSGPHRDKITFNLNGESFENIA--SFGQRKSLSLCCIYCFLK 279

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           ++ + +  + ILLLDE+ + LD + R + F  + D   Q F+TG  K
Sbjct: 280 VVEDFSKKSIILLLDELESGLDVE-RVSFFMELFD-KYQYFLTGQSK 324


>gi|237721344|ref|ZP_04551825.1| DNA replication and repair protein RecF [Bacteroides sp. 2_2_4]
 gi|229449140|gb|EEO54931.1| DNA replication and repair protein RecF [Bacteroides sp. 2_2_4]
          Length = 372

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 159/365 (43%), Gaps = 36/365 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS    F ++S   +  
Sbjct: 3   LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58

Query: 67  IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                   FF      E  +G  + I   ++ R  +  +  +      R  D +   L +
Sbjct: 59  QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
             + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +  
Sbjct: 116 VMVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKALAQRNALLKSEFSVEEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  MA+ G  +   R        + I E++       I  S   F+    D+   
Sbjct: 176 LFLVWEEMMAQAGAIVFQKR-------EAFIREFIP------IFQSFYSFISQ--DKEVV 220

Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            L  E +A+       L   R+ D +   +L G H+ +L +   +  I    GS G+ K 
Sbjct: 221 GLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 279

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353
            LV + LA    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++ 
Sbjct: 280 YLVALKLAQFDFLKRTGWTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRG 339

Query: 354 VFDSL 358
             D +
Sbjct: 340 HLDRI 344


>gi|188574273|ref|YP_001911202.1| recombination protein F [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518725|gb|ACD56670.1| DNA replication and repair RecF protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 365

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 142/342 (41%), Gaps = 8/342 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      + + G+
Sbjct: 3   LSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                     EG     + + +   R        +++   +  +  L   L +    P  
Sbjct: 63  NDLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + SG    RRRFLD  +F ++P        + R ++ RN LL +G        + + +
Sbjct: 123 HVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQGA-QPRMLDAWDHE 181

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +AE G  +   R+  +  L   ++  V     P + LS   F  G + +   +L    A 
Sbjct: 182 LAESGETLTSRRMRYLERLQDRLIP-VADVIAPSLGLSALTFAPG-WKRHEVSL----AD 235

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L   R  D  +  T  GPHR+D +  + D        S G+ K+  +   LA A   + 
Sbjct: 236 ALLLARDRDRQNGYTSQGPHRADWMPHF-DVLPGKDALSRGQAKLTALACLLAQAEDFAF 294

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
                P++ LD++ + LD   +  +   +    +Q+ +T T+
Sbjct: 295 ERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQMLITATE 336


>gi|16330164|ref|NP_440892.1| recombination protein F [Synechocystis sp. PCC 6803]
 gi|6093944|sp|P73532|RECF_SYNY3 RecName: Full=DNA replication and repair protein recF
 gi|1652652|dbj|BAA17572.1| RecF protein [Synechocystis sp. PCC 6803]
          Length = 384

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 178/378 (47%), Gaps = 19/378 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  FRNY    + F AQ TI VG+N  GK+N+LEA+  L+  +  R +   ++  
Sbjct: 3   LKKLYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLLEAVELLATLKSHRTSRDQELVL 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+ +     A +E    +A++ I L     R++R  Q  +   R +D L     + +  
Sbjct: 63  DGAAN-GQIKALLERQYSVAELEIDLRRSGRRNLRINQ--NQCRRQLDFLGCLNAVEFSC 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----------- 175
             +D +  G    RR++LD ++  ++P +   +  ++ +++ RN LL             
Sbjct: 120 LDLD-LVRGAPDCRRQWLDTLLTQLEPLYAHLLGQYQHIVKQRNALLKSLRQQWETGLAL 178

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
           G   ++  S  + Q+ E+G ++   R   +  L+ L  E+  + +  +  L++T   +  
Sbjct: 179 GEESTASLSLWDQQLVEMGTRVVRRRARGLARLAPLAQEWHGRISGGNETLTVTYQPNVT 238

Query: 236 F-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           +       + + + +KL   R  +     T++GPHR D +    D      +GS G+Q+ 
Sbjct: 239 WVGDDPEVVHQAFLEKLAQRRSAELHLGTTVVGPHR-DEVGFVLDDTPARTYGSQGQQRT 297

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           +++ + LA   LI    G  P+LLLD++ A LD D++  L   + D   Q  +T T  S 
Sbjct: 298 LVLALKLAELSLIETVIGEPPLLLLDDVLAELDLDRQGQLLMAIED-RFQTLITTTHLSR 356

Query: 355 FDS-LNETAKFMRISNHQ 371
           FD     +A+ ++++  Q
Sbjct: 357 FDDRWRRSAQILKVNAGQ 374


>gi|291515283|emb|CBK64493.1| recF protein [Alistipes shahii WAL 8301]
          Length = 415

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 156/356 (43%), Gaps = 41/356 (11%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI  LN   F+N +   L         VGDNG GKTN+++A+ +LS  +     +     
Sbjct: 5   KIALLN---FKNISQEELALCPGINCLVGDNGAGKTNVVDAVYYLSMCKSSLPMTDGQSI 61

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETR----DDRSVRCLQINDVVIRVVDELNKHLR 121
           R G+  F      VEG    A  + K ET       +  + L+ N    +  + L+ H+ 
Sbjct: 62  RHGADFFL-----VEGT--YASDAGKRETIVCSFSRKGGKVLKRNG---KEYERLSDHVG 111

Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           +   V   P+   + S  + ERRR+L+  +  +D  +   ++ +  ++  RNRLL +   
Sbjct: 112 LIPAVIVSPADSALISDAADERRRYLNAFISQLDRAYLGSVMRYNAVLAERNRLL-KTRP 170

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D +     + Q+ E G  I+  R E    L  +   Y                L G  +Q
Sbjct: 171 DETMLQIYDMQLCEHGKAIHARRQEFAERLQPVTAAYYS-------------ILSGDREQ 217

Query: 239 SFCALKEE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                K E     + + L D R+ D ++  T  G HR DL++      +   +GS G+QK
Sbjct: 218 VELHYKSELNDRPFEEILLDARQKDIVNEFTTAGIHRDDLVLKIGGYPLR-KYGSQGQQK 276

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMT 348
             L+ + LA   +++ T G  PILLLD++   LD  +   L R+V+D    QI +T
Sbjct: 277 SFLIALKLAQYAVVAQTKGERPILLLDDLFDKLDAGRVEQLIRLVSDNTFGQILIT 332


>gi|291455695|ref|ZP_06595085.1| RecF protein [Bifidobacterium breve DSM 20213]
 gi|291382623|gb|EFE90141.1| RecF protein [Bifidobacterium breve DSM 20213]
          Length = 385

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 153/358 (42%), Gaps = 48/358 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I VG NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILVGKNGLGKTNLVEAVEVLSTGASHRASSMLPL 60

Query: 65  TRIG--SPSFFSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIRVVDELNKH 119
              G  + +  +     +G     + SI     +     S   L + D++ R+       
Sbjct: 61  IERGQTTATIRANVVDDDGQSTTYEASIHARGANRARINSGTSLYLRDIIGRIPS----- 115

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             +S+  P   R+ SG    RR  L++    ++P + + +  F R+ + R  LL +    
Sbjct: 116 --VSF-TPEDQRLVSGDPGARRTLLNQAGALLEPGYMQSLHQFTRIGKQRATLLKQLGAS 172

Query: 180 SSWCSSIEA----------QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
           ++    ++A          Q  E GV++   R  +I+ L+         E F  +   LT
Sbjct: 173 ANTGQPVDAVLSGLEIWTGQFIEAGVELTRMRARVIDLLA---------EPFAALYAELT 223

Query: 230 GFLD-------GKFDQSFCALKE-----EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
           G  D         FD+            E+ ++++ G     ++   LIGP R DL ++ 
Sbjct: 224 GNDDTVSLTYAPSFDEVLMQDDPRLSISEHFQRIYPGEVARGVN---LIGPQRDDLTLNL 280

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
            D        S GE   + + + +A  ++I    G  PI++LD++ A LD+++R  + 
Sbjct: 281 ADMPAR-EFASNGEMWTMALALKMALFQVIRQRLGLKPIVILDDVFAQLDDNRRTQIL 337


>gi|317499298|ref|ZP_07957571.1| DNA replication and repair protein RecF [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893467|gb|EFV15676.1| DNA replication and repair protein RecF [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 267

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 24/259 (9%)

Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           + I+ + IR   +L   + +    P   +I      ERR+FLD  +  ++  +  ++ ++
Sbjct: 1   MAIDRIPIRRSSDLLGQIPVILFSPEDLKIVKSGPSERRKFLDIELSQMERLYLYQLTNY 60

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKE 219
            +++  RN LL +  F ++   ++EA   Q+ + G ++   R + I  L     E  QK 
Sbjct: 61  NKILVQRNNLLKQIRFQNNLIETLEAWDIQLVKYGSEVIKYREKFIKHLG----EVCQK- 115

Query: 220 NFPHIKLSLTG-----FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
               I   LTG      L+   D  + +   E AKK    R+ D     T +GPHR D  
Sbjct: 116 ----IHNKLTGGKEKILLEYDRDVGYDSYLTELAKK----RQKDLKYSTTTVGPHRDD-- 165

Query: 275 VDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
           + +    I I  +GS G+Q+   + + LA  +L+      +PILLLD++ + LD +++  
Sbjct: 166 ISFIVNGIDIRKYGSQGQQRTAALSLKLAQIQLMREVMKESPILLLDDVLSELDSNRKTY 225

Query: 334 LFRIVTDIGSQIFMTGTDK 352
           L   + D  + I  TG D+
Sbjct: 226 LLESIKDTQTIITCTGLDE 244


>gi|58579626|ref|YP_198642.1| recombination protein F [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|75508390|sp|Q5H713|RECF_XANOR RecName: Full=DNA replication and repair protein recF
 gi|58424220|gb|AAW73257.1| DNA replication and repair RecF protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 368

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 142/342 (41%), Gaps = 8/342 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      + + G+
Sbjct: 6   LSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                     EG     + + +   R        +++   +  +  L   L +    P  
Sbjct: 66  NDLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPGS 125

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + SG    RRRFLD  +F ++P        + R ++ RN LL +G        + + +
Sbjct: 126 HVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQGA-QPRMLDAWDHE 184

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +AE G  +   R+  +  L   ++  V     P + LS   F  G + +   +L    A 
Sbjct: 185 LAESGETLTSRRMRYLERLQDRLIP-VADVIAPSLGLSALTFAPG-WKRHEVSL----AD 238

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L   R  D  +  T  GPHR+D +  + D        S G+ K+  +   LA A   + 
Sbjct: 239 ALLLARDRDRQNGYTSQGPHRADWMPHF-DVLPGKDALSRGQAKLTALACLLAQAEDFAF 297

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
                P++ LD++ + LD   +  +   +    +Q+ +T T+
Sbjct: 298 ERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQMLITATE 339


>gi|117927214|ref|YP_871765.1| recombination protein F [Acidothermus cellulolyticus 11B]
 gi|166220694|sp|A0LQR9|RECF_ACIC1 RecName: Full=DNA replication and repair protein recF
 gi|117647677|gb|ABK51779.1| DNA replication and repair protein RecF [Acidothermus
           cellulolyticus 11B]
          Length = 371

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 148/364 (40%), Gaps = 37/364 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +++FR+Y    L  D    +FVG NG GKTN++EA+ +L+  R  R A+ A + R GS
Sbjct: 6   LELTDFRSYRRAALELDPGVNVFVGSNGQGKTNLVEAVCYLALLRSHRTATDAPLVRQGS 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                     E +     I + +E    R+ R L++N    R   +L   LR+    P  
Sbjct: 66  E---RAVLHGEVLTSGRRIDLDVEIVPGRANR-LRVNGHATRRARDLVGILRVVIFAPED 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-------- 181
             +  G    RR +LD ++  + PR      ++E+ +R RN  L     D          
Sbjct: 122 LALVKGDPAARRDYLDDVLVELRPRLFAVRAEYEKALRQRNAFLRAVAQDGQQVDRNSLD 181

Query: 182 -W-----------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
            W             +    + EL   +  A   +     ++ +EY  +   P   L   
Sbjct: 182 VWNLHFARAAAALLDARRRLVHELAPFVEKAYAAISGGSGAVRLEY--RSTVPEEVLQ-D 238

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
              + +      AL++    +L  G         TL+GPHR DL ++  D      + S 
Sbjct: 239 ADEETRIAGILAALRKVQDAELARG--------LTLVGPHRDDLNLE-LDSRPARGYASH 289

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE     + + L    L+  + G  P+++LD++ A LD+ +R  L   V+     +  + 
Sbjct: 290 GESWSYALALRLGAYELL-RSDGETPVMILDDVYAELDQQRRRRLTGCVSGAEQLLITSA 348

Query: 350 TDKS 353
            D+ 
Sbjct: 349 VDEP 352


>gi|293191014|ref|ZP_06609058.1| RecF protein [Actinomyces odontolyticus F0309]
 gi|292820701|gb|EFF79667.1| RecF protein [Actinomyces odontolyticus F0309]
          Length = 398

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 163/400 (40%), Gaps = 37/400 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FR++    +      T+ VG NG GKTN++EA+++LS     R  +   +
Sbjct: 1   MRVSHLALDDFRSWKHGVVELPEGPTVLVGANGQGKTNLVEALAYLSTFSSHRVGAEGAL 60

Query: 65  TRI------GSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            RI       +P      ARV   G E +    I+LE    ++ R  ++N   ++  + L
Sbjct: 61  VRIPIDEAEAAPGGAVIRARVVIFGREQV----IELEIVRGKANRA-RVNRAQVKPREIL 115

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              +R     P    +  G    RR FLD +   + P H     DF+R+ R R  L+   
Sbjct: 116 GV-VRTVVFAPEDLSLVRGDPSVRRSFLDDLATQLSPIHASVRSDFDRVARQRAALMKAA 174

Query: 177 YF-----DSSWCSSIE---AQMAELGVKINIARVEMINALSSLIM-EYVQKENFP-HIKL 226
                   S   S++E    Q A L  +I   R  +++ L       Y    + P H+ L
Sbjct: 175 QASLRRGQSPDLSTLEIWDQQFAALSARITATRASIVSRLEEPAARSYDDVADSPRHLHL 234

Query: 227 SLTGFLD---GKFDQSFC--------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
           +    +D   G    +          A  E     L   R+ ++     L+G HR DL +
Sbjct: 235 AFDASVDRVIGTDPDNPASADLTDVDAQTERMLAALASVREKETERGVNLVGAHRDDLTL 294

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                 +   + S GE   V + + L    L+S+  G  PIL+LD++ A LD  +R  L 
Sbjct: 295 SLGAMPVK-GYASHGESWSVALALRLGAFELLSD-DGDTPILILDDVFAELDSSRREGLA 352

Query: 336 RIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
            + +     I        + DSL+  A  +R+   +   I
Sbjct: 353 ALASKAEQIIVTCAVAGDLPDSLDHHALHVRLDPERGTVI 392


>gi|33866581|ref|NP_898140.1| recombination protein F [Synechococcus sp. WH 8102]
 gi|51316337|sp|Q7U4L8|RECF_SYNPX RecName: Full=DNA replication and repair protein recF
 gi|33633359|emb|CAE08564.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. WH 8102]
          Length = 365

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 157/354 (44%), Gaps = 24/354 (6%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN+  L L       + +G NG+GK+N+LEA+  L   R  R +   D+ +  +P    
Sbjct: 4   FRNHRKLSLELTQPRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWEAPRALL 63

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
                +G +      ++LE R     +  +    + R +D +     I +    ++ +  
Sbjct: 64  RAGLDDGDQ------LELELRRQGGRQARRNGKTLDRQLDLIGPLRCIGFSALDLE-LVR 116

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-----SWCSSIEAQ 189
           G    RR++LDR+V  ++P +   +  + RL+R R++L   G   +     +   + + Q
Sbjct: 117 GEPALRRQWLDRVVLQLEPVYADLLGRYNRLLRQRSQLWRRGAQTNPNQRDALLDAFDVQ 176

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC------AL 243
           MA +  +I+  R   +  L  +   +    +    +L L      + D          A+
Sbjct: 177 MALVSTRIHRRRQRALRRLEPIARRWQSHLSAGSEELELHYQPGSRLDAEEAEEPWRLAI 236

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E+   +  +  ++ S      +GPHR ++ +           GS+G+Q+ +++G+ LA 
Sbjct: 237 EEQLRLQRPEEERLGSCR----VGPHRDEVSLQLGGTPAR-RFGSSGQQRSLVLGLKLAE 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
             L++   G AP+LLLD++ A LD  +++ L   V     Q  ++ T  S F+ 
Sbjct: 292 LELVTQLFGEAPLLLLDDVLAELDPTRQHLLLEAVGQ-EHQCLVSATHLSGFEG 344


>gi|238917986|ref|YP_002931500.1| recombination protein F [Edwardsiella ictaluri 93-146]
 gi|259563363|sp|C5BHC7|RECF_EDWI9 RecName: Full=DNA replication and repair protein recF
 gi|238867554|gb|ACR67265.1| DNA replication and repair protein RecF [Edwardsiella ictaluri
           93-146]
          Length = 358

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 148/365 (40%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LVIRDFRNIEEADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRVIRHDC 65

Query: 70  PSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            S F    R++   G    + +  + + D  VR   I+      V EL + L +  + P 
Sbjct: 66  -SAFVLHGRIDDGGGRERAVGLSKDRQGDSKVR---IDGSDGHKVAELAQMLPMQLITPE 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSS 185
              + +G    RR FLD   F  +        +  R+++ RN   R +T       W   
Sbjct: 122 GFTLLNGGPKYRRAFLDWGCFHGERSFFTAWNNLRRVLKQRNAALRQVTRYAQIRPW--- 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++  L  +++  R     A++  I      +  P   LS +       +  + AL E
Sbjct: 179 -DQELVPLAEQVSALRAAYSEAIAQDIAATC-SQFLPEYALSFSFMRGWDRESDYAALLE 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            + ++       D     T  GPH++D  +   D        S G+ K+++  + LA   
Sbjct: 237 RHFER-------DRALTYTAQGPHKADFRI-RADGTPVEDLLSRGQLKLLMCALRLAQGE 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAKF 364
            ++  +G   + L+D+ ++ LD  +R  L   +   G+Q+F++  +   + D ++E  K 
Sbjct: 289 YLTRHSGRQCLYLIDDFASELDAGRRRLLAERLKSTGAQVFVSAVNADQIGDMVDEKGKM 348

Query: 365 MRISN 369
             +  
Sbjct: 349 FHVEQ 353


>gi|297625207|ref|YP_003686970.1| DNA replication and repair protein recF [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296920972|emb|CBL55509.1| DNA replication and repair protein recF [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 433

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 164/387 (42%), Gaps = 53/387 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L + +FR+Y + +L      ++FVG NG GKTN++EA+ +LS     R ++ A + R
Sbjct: 3   VDHLELKDFRSYEAAKLDIGPGVSVFVGPNGHGKTNLVEAVEYLSTLSSHRVSADAPLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+         V G +    + ++LE    R+    +IN   +R + +    LR     
Sbjct: 63  AGTSQAIVRALVVAGRDDPRKLLLELEINAGRANHA-RINRAPVRRMRDFIGALRTVVFS 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFDSS 181
           P    +  G   +RR FLD +V    PR      D++R++R RN LL          D  
Sbjct: 122 PEDLAMVKGDPTDRRAFLDALVITRWPRLAGVKSDYDRVLRQRNTLLKTLARRSSRVDGG 181

Query: 182 WCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-- 236
             ++++    ++A+ G ++  AR+  ++ L    M Y  + ++  I   +   +D ++  
Sbjct: 182 DVATLDVWNERLAQFGAELLAARLATLSDL----MPYA-RASYAAIA-PVNNRVDARYKS 235

Query: 237 -------------DQSFCALKE----------------EYAKKLFD---GRKMDSMSRR- 263
                        D +   L E                + A  + D    R+ D ++R  
Sbjct: 236 SLSGLSELLGYATDGAPGELPEAPDTDDEVRTPAPGPDQLAVLMMDAMAARRGDELARGV 295

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
           TL+GPHR D+ +          + S GE   + + + L    ++       P+L+LD++ 
Sbjct: 296 TLVGPHRDDVTL-TIGTLPAKGYASHGESWSLALALRLGSLDML-RADDVEPVLVLDDVF 353

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGT 350
           A LD  +R+ L   V     Q+ +T  
Sbjct: 354 AELDVTRRDRLADAVAK-AEQVLVTAA 379


>gi|293369424|ref|ZP_06616009.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CMC
           3f]
 gi|292635591|gb|EFF54098.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CMC
           3f]
          Length = 375

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 161/372 (43%), Gaps = 50/372 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS    F ++S      
Sbjct: 6   LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSS------ 55

Query: 67  IGSP----------SFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDE 115
            G+P           FF      E  +G  + I   ++ R  +  +  +      R  D 
Sbjct: 56  -GNPIDSQNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDH 112

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174
           +   L +  + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +
Sbjct: 113 IG-FLPLVMVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKS 171

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           E   +       E  MA+ G  +   R        + I E++       I  S   F+  
Sbjct: 172 EFPVEEELFLVWEEMMAQAGAIVFQKR-------EAFIREFIP------IFQSFYSFISQ 218

Query: 235 KFDQSFCALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
             D+    L  E +A+       L   R+ D +   +L G H+ +L +   +  I    G
Sbjct: 219 --DKEVVGLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEG 275

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIF 346
           S G+ K  LV + LA    +  T    P+LLLD+I   LD  +   + ++V  D   QIF
Sbjct: 276 SQGQNKTYLVALKLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIF 335

Query: 347 MTGTDKSVFDSL 358
           +T T++   D +
Sbjct: 336 ITDTNRGHLDRI 347


>gi|88798537|ref|ZP_01114121.1| recombination protein F [Reinekea sp. MED297]
 gi|88778637|gb|EAR09828.1| recombination protein F [Reinekea sp. MED297]
          Length = 364

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 141/349 (40%), Gaps = 18/349 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+    RN AS RL       +F GDNG GKT++LEAI  L+  R F+ A    V     
Sbjct: 6   LSFQGIRNLASARLNLSPGVNVFYGDNGAGKTSVLEAIHLLAMARSFKLARTRTVVSHEL 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                T    +G    + + ++   +    +R   +N   +  + +L   + +  +    
Sbjct: 66  EELLVTGELGDG----SRLGVRRTQKGQVQIR---LNGESLASLAQLVHLMPVQLIHSDS 118

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             +  G   +RR+FLD  VF             ++ ++ RN LL  G  + S  +  E +
Sbjct: 119 FALLEGSPGDRRQFLDWGVFHQTVAFHEDWQRLQKSLKNRNSLLRSGRIERSQLAVWERE 178

Query: 190 MAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
             E   +I+  R + +        + + Q  + P +++      D          ++   
Sbjct: 179 YIEAAERIDGYRKQYLEGFVPCFHDVLNQLVSLPELRIHYYRGWD---------RQKPLN 229

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           + L   R  D     T  GP R+D+ +   +K       S G+QK+V+  + +A +  + 
Sbjct: 230 EVLEQQRDRDMKLGYTQSGPQRADMRIK-VNKVNAADELSRGQQKLVVCALKIAQSLYLQ 288

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
                  + L+D++ A LD      L  ++  + SQ+FMT  D +   +
Sbjct: 289 RQQNQPTVFLIDDLPAELDHHHIQRLGALMETLQSQVFMTCVDPAPLKT 337


>gi|15604793|ref|NP_219577.1| recombination protein F [Chlamydia trachomatis D/UW-3/CX]
 gi|166154295|ref|YP_001654413.1| recombination protein F [Chlamydia trachomatis 434/Bu]
 gi|166155170|ref|YP_001653425.1| recombination protein F [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|255310877|ref|ZP_05353447.1| recombination protein F [Chlamydia trachomatis 6276]
 gi|255317177|ref|ZP_05358423.1| recombination protein F [Chlamydia trachomatis 6276s]
 gi|301335547|ref|ZP_07223791.1| recombination protein F [Chlamydia trachomatis L2tet1]
 gi|13959461|sp|O84077|RECF_CHLTR RecName: Full=DNA replication and repair protein recF
 gi|226737775|sp|B0B9I2|RECF_CHLT2 RecName: Full=DNA replication and repair protein recF
 gi|226737777|sp|B0BB61|RECF_CHLTB RecName: Full=DNA replication and repair protein recF
 gi|3328469|gb|AAC67665.1| ABC superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|165930283|emb|CAP03769.1| DNA replication and repair protein [Chlamydia trachomatis 434/Bu]
 gi|165931158|emb|CAP06723.1| DNA replication and repair protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|296435592|gb|ADH17766.1| recombination protein F [Chlamydia trachomatis G/9768]
 gi|296436516|gb|ADH18686.1| recombination protein F [Chlamydia trachomatis G/11222]
 gi|296437452|gb|ADH19613.1| recombination protein F [Chlamydia trachomatis G/11074]
 gi|297139951|gb|ADH96709.1| recombination protein F [Chlamydia trachomatis G/9301]
 gi|297748203|gb|ADI50749.1| RecF [Chlamydia trachomatis D-EC]
 gi|297749083|gb|ADI51761.1| RecF [Chlamydia trachomatis D-LC]
          Length = 365

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 129/320 (40%), Gaps = 8/320 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRNY  LRL    +     G N  GKTN+LEA+  LS GR FR +   D 
Sbjct: 1   MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+  FF     +E +    ++   L  + D+  + +  +   I  + EL     +  
Sbjct: 61  IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  I  G   ERRRFLD ++     ++   +  + + +  RN  +     +    S
Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQ--NQKAIS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +  + +   G  +   R E    L+++            + L     L  +   +   + 
Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y ++L      D     T++GPHR +L++   D  +     S G++  +L  +  A  
Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVA-KFSSEGQKHSLLAVLRFAEC 292

Query: 305 RLISNTTGFAPILLLDEISA 324
             +       P+L +D+I A
Sbjct: 293 VYLQEEFCIHPLLCMDDIHA 312


>gi|330835986|ref|YP_004410627.1| DNA replication and repair protein recF [Spirochaeta coccoides DSM
           17374]
 gi|329747889|gb|AEC01245.1| DNA replication and repair protein recF [Spirochaeta coccoides DSM
           17374]
          Length = 359

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 146/358 (40%), Gaps = 15/358 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L+I  FRN     +  DA+  + VG+NG GKTN LEA+  L  G  FR  +  + 
Sbjct: 1   MRILSLDIHCFRNIRKASVDTDARSVMLVGENGQGKTNFLEALYVLCYGTSFRTPNLREA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F      V+      +I +K   +  RS+   +       + D       I  
Sbjct: 61  VSHDGRGFSVKADFVDDSGNHHEIQVK-HVQGKRSIFIDRKE-----IYDRKELIYTIPC 114

Query: 125 LVPSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           +V   D I    G    RRRF D+ +   +P        +  ++R RN  L EG    S 
Sbjct: 115 IVFCHDDIEFVRGEPEARRRFFDQTMSMYNPLFFDDSRRYRNILRQRNAALKEGRL--SL 172

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+A  G+ I  AR   +   + +     +  +   +++S+      K  ++   
Sbjct: 173 VPIYDFQLARYGMSIQKARKAAVKEFNDIFPRMYRDVSGTDLEISVEYQPSWKMAENAED 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            +E  ++ L    + D   + T  G HR   IV   D+  +   GSTG+ ++  + + +A
Sbjct: 233 AEEILSRAL----ERDVRMQTTCSGVHRDKFIVKDADRPFSQT-GSTGQLRLASLILRMA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            A      TG  P+LL+D++   LD  +R      + D     F    ++  F SL +
Sbjct: 288 QAGFFFGKTGKEPVLLIDDVLLELDVTRRGRFLSHIEDYSQAFFTFLPEEKYFSSLED 345


>gi|118615922|ref|YP_904254.1| recombination protein F [Mycobacterium ulcerans Agy99]
 gi|166220719|sp|A0PKB4|RECF_MYCUA RecName: Full=DNA replication and repair protein recF
 gi|118568032|gb|ABL02783.1| DNA replication and repair protein RecF [Mycobacterium ulcerans
           Agy99]
          Length = 385

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 32/364 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++A   L      T+FVG NG GKTNI+EA+ + +     R  + A + R
Sbjct: 3   VRHLGLRDFRSWAHADLELGPGRTVFVGPNGFGKTNIIEALWYSATLGSHRVGTDAPLIR 62

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    +G E     ++ LE    R+ +  ++N   +R   E+   LR    
Sbjct: 63  AGADRAVISTIVVNDGRE----CAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------- 175
            P    +  G   +RRR+LD +     P       D+++++R R  LL            
Sbjct: 118 APEDLALVRGDPADRRRYLDDLATLRRPTIAGVRADYDKVLRQRTALLKSVSGARFRGDR 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLT 229
           G  D+      ++++A+ G ++  AR++++  L+  + +  Q      +      + S+ 
Sbjct: 178 GALDT--LDVWDSRLAQHGAELMAARIDLVRLLAPEVEKAYQLLAPESRSAAIAYRASMD 235

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT-LIGPHRSDLIVDYCDKAIT--IAH 286
            F+            EE        R+   + R   L+GPHR DL +   D+      +H
Sbjct: 236 AFVAADDAAPDRVALEEGLLAALAARRDAELERGVCLVGPHRDDLELRLGDQPAKGFASH 295

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           G +      +       A  +    G  P+LLLD++ A LD  +R AL R V +   Q+ 
Sbjct: 296 GESWS----MAVALRLAAFALLRADGSEPVLLLDDVFAELDAARRTALAR-VAESAEQVL 350

Query: 347 MTGT 350
           +T  
Sbjct: 351 VTAA 354


>gi|294672977|ref|YP_003573593.1| DNA replication and repair protein RecF [Prevotella ruminicola 23]
 gi|294473002|gb|ADE82391.1| DNA replication and repair protein RecF [Prevotella ruminicola 23]
          Length = 366

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 154/365 (42%), Gaps = 49/365 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++  ++N A   L F  +    +G NGVGKTN+L+AI +LS          + V R G+
Sbjct: 6   LSVINYKNIAEATLDFSPKINCLIGQNGVGKTNVLDAIYYLSFCHSANNPIDSQVIRHGA 65

Query: 70  PSFFSTFARVEG----MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             FF      EG      G+   + K   R+ +  R L  +  +I VV           +
Sbjct: 66  -EFFVLEGAYEGDLHIYCGMKRGTKKHFKRNKKEYRRLSEHIGLIPVV----------VV 114

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSSW 182
            PS   +  G S ERRR +D ++   +  +   M  + + ++ RN +L    E   D   
Sbjct: 115 SPSDTLLIEGGSEERRRLMDMVIAQYEHGYMEAMNRYNKALQQRNAMLKLDEEPNLD--V 172

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S  E QMA  G +I  +R   +  L+ +         F  I  +++G      ++   A
Sbjct: 173 ISLFEEQMAYEGERIYKSRKAFVEELTPI---------FQRIHETISG------NREQVA 217

Query: 243 LKEEYAKKLFDGRKMDSMSR---------RTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           L   Y      G  ++ + R          +L G HR DL +      +    GS G+ K
Sbjct: 218 LN--YVSHCQRGPLLEVIQRDRFKDRAIGYSLHGVHRDDLEITLGGHLMK-REGSQGQNK 274

Query: 294 VVLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTD 351
             ++ + LA    +  T +   P+LLLD+I   LD  +   + ++V  D   QIF+T T+
Sbjct: 275 TFVIALKLAQFDFLKRTNSKTTPLLLLDDIFDKLDAQRVEQIVKLVAGDDYGQIFITDTN 334

Query: 352 KSVFD 356
           +   D
Sbjct: 335 RDHLD 339


>gi|196228820|ref|ZP_03127686.1| DNA replication and repair protein RecF [Chthoniobacter flavus
           Ellin428]
 gi|196227101|gb|EDY21605.1| DNA replication and repair protein RecF [Chthoniobacter flavus
           Ellin428]
          Length = 352

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 133/316 (42%), Gaps = 20/316 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  FR + +  + F       VG N  GKT++LEA   L   +  R    A V +
Sbjct: 13  LRGLKVRHFRCFDAREVEFAPGLNFIVGPNAHGKTSLLEAACILLRLQSPRITRLAHVIQ 72

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F      V+G  G+  +         R  + L +++V  +   E  +  R+ +  
Sbjct: 73  HERRGFV-----VDGYFGVRHLQFYF----SRERKKLALDEVEQKSAREYLEIGRVVYFA 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
            S   +  G    RRRFLD +    D  +R+ + D+ER +R RN LL          ++ 
Sbjct: 124 NSDIELVRGSGDGRRRFLDFVATQRDGTYRQALRDYERALRSRNLLLKSSSPRWREIAAF 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +  +   G ++  AR ++I  L     +  +  +    +L L     G          E+
Sbjct: 184 DEPLLSAGQRVAAARAKLIEELQPEAEKAHRGISGAREQLQLEYVPGGG---------ED 234

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           +   L      D+  R+T  GPHR D  V +     + +  S G+Q+ +++ + L  ARL
Sbjct: 235 FPATLAAAHNEDARLRQTSAGPHRDD--VRFMLNGQSSSFASEGQQRTLVLALKLGAARL 292

Query: 307 ISNTTGFAPILLLDEI 322
           +      AP+LLLD+I
Sbjct: 293 LEQRFESAPVLLLDDI 308


>gi|313835166|gb|EFS72880.1| recombination protein F [Propionibacterium acnes HL037PA2]
 gi|314929142|gb|EFS92973.1| recombination protein F [Propionibacterium acnes HL044PA1]
 gi|314970909|gb|EFT15007.1| recombination protein F [Propionibacterium acnes HL037PA3]
 gi|328905789|gb|EGG25565.1| DNA replication and repair protein RecF [Propionibacterium sp. P08]
          Length = 394

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 161/369 (43%), Gaps = 32/369 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR+Y  + +   A  T F+G NG GKTN++EA+ +LS     R  +   + R
Sbjct: 3   VERLELVDFRSYVRVDVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVNNDTPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           +G+           G +    + +++E    R+ R       + R   E+   LR     
Sbjct: 63  LGAGQAVVRGRVRAGADDARSLLLEVEINARRANRARINRAPLPR-PREILGVLRTVVFS 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEGYF 178
           P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL        + G  
Sbjct: 122 PNDLTVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLAGKGRSAGAE 181

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF------- 231
             +     + ++A +G ++  AR++ ++A+  L      +E  P   L+   +       
Sbjct: 182 IGATMDIWDDELATIGAELLSARLDTLSAVMPL-TSAAYREVAPVNDLATASYKSTIDLE 240

Query: 232 ------LDGKFDQSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKA 281
                  +GK  +     + E A +       R+ D + R  TL+GP R D+++   +  
Sbjct: 241 GLWSPPQEGKSPEPID--RNELAHRFLAALAQRRADELIRGVTLVGPQRDDIVLQIGEMP 298

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V   
Sbjct: 299 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDVTRRDRLAASVVQ- 355

Query: 342 GSQIFMTGT 350
             Q+ +T  
Sbjct: 356 ADQVLVTAA 364


>gi|227487660|ref|ZP_03917976.1| recombination protein F [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092354|gb|EEI27666.1| recombination protein F [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 267

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 116/268 (43%), Gaps = 15/268 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++  L L      T+F G NG GKTNI+E+I +L+     R    A + R
Sbjct: 3   VRHLTLKDFRSWPELDLELGPGVTVFTGANGFGKTNIVESIYYLANLSSHRVKHDAPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+ +       V G     ++ +++ T    +    Q+N   +R   EL   +R     
Sbjct: 63  AGADAAQLAATVVSGGR---ELVVRM-TVKPHAANLAQLNRTRLRHPRELLGGVRCVLFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDS--S 181
           P    + +G    RRR +D ++    PR      ++ER+++ RN LL +    ++ S   
Sbjct: 119 PEDLHLVTGEPEGRRRLIDSVISQETPRFSATKAEYERVLKQRNALLKQAKANFYPSMHG 178

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                ++Q+A LG ++  AR  +I  L  L+ E    E  PH +     +L    DQ   
Sbjct: 179 MLDVWDSQLASLGAELVTARSALITRLHPLV-EAAYLEIAPHSRPPAISYL--TRDQGET 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
             + E A     G       RR   GPH
Sbjct: 236 TAETEDAAAHLAGGDPPPRDRR---GPH 260


>gi|307825354|ref|ZP_07655573.1| DNA replication and repair protein RecF [Methylobacter
           tundripaludum SV96]
 gi|307733529|gb|EFO04387.1| DNA replication and repair protein RecF [Methylobacter
           tundripaludum SV96]
          Length = 358

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 151/355 (42%), Gaps = 15/355 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I   RN     +V      + +G+N  GK+ ++EAI  L   + FR ++   V     
Sbjct: 6   LDIYGVRNIQKESIVPSPAINLIIGENASGKSTLIEAIFILGRAKSFRSSAIKSVINFTQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                +   V+       + I+L+ ++      ++IN    +   +L   L +  + P  
Sbjct: 66  NHLVVSAQTVQENGSHLHLGIQLDGKNIE----IRINQQSKQKRSDLAYALPLQLIHPKS 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             +    S  RR FLD  VF  D         F++ +  RN LL     +    +  + +
Sbjct: 122 YELLDAGSQIRREFLDWGVFNNDQNFLPAWRKFKKALSQRNALLKTRRLEQ--INVWDNE 179

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +   G  ++  R + +     + +E + +       L+L G LD +    +   KE +++
Sbjct: 180 LVYYGTIVDSYRQQYLEKFKPVFIEIIGR------FLALDG-LDLRLVSGWDTAKE-FSR 231

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L + +  D     T  GPHR D  +   +  I     S G+ K++++ + LA  +L++N
Sbjct: 232 VLIEDQDKDLRYGFTHSGPHRGDFQL-LVNNRIAKDFVSRGQLKLLVMSLKLAQVQLLAN 290

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
                  +L+D+ +A LD   R  L   ++++  Q+F+T T+   F  L++   +
Sbjct: 291 EQSQTGCILIDDFAAELDVVNRAKLLHYLSEMACQVFITATETQDFGDLSQIKNY 345


>gi|255693357|ref|ZP_05417032.1| RecF protein [Bacteroides finegoldii DSM 17565]
 gi|260620834|gb|EEX43705.1| RecF protein [Bacteroides finegoldii DSM 17565]
          Length = 369

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 156/360 (43%), Gaps = 26/360 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS    F ++S   +  
Sbjct: 3   LKRISILNYKNLEEVELGFSAKLNCFFGQNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58

Query: 67  IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                   FF      E  +G  + I   ++ R  +  +  +      R  D +   L +
Sbjct: 59  QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
             + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +  
Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNTLLKSELPVEEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQS 239
                E  MA+ G  +   R   I     +   +     ++   + LS        +D  
Sbjct: 176 LFLVWEEMMAQAGEVVFKKREVFIKEFIPIFQSFYSFISQDKEQVGLS--------YDSH 227

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             A +    + L   R+ D +   +L G H+ +L +   +  I    GS G+ K  LV +
Sbjct: 228 --AREASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVAL 284

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL 358
            LA    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +
Sbjct: 285 KLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRI 344


>gi|218291097|ref|ZP_03495120.1| DNA replication and repair protein RecF [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238982|gb|EED06189.1| DNA replication and repair protein RecF [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 371

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 152/363 (41%), Gaps = 30/363 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + + +FRNYA   +       + VG+NG GKTN LEA+  ++ G+  R     D+
Sbjct: 1   MDIRRVELIDFRNYAQAEIELSPGVNVLVGENGQGKTNALEAMLLIAVGKSHRAHRDRDL 60

Query: 65  TRIGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R     +    ARV  E      D  + LE   +   R    N V +  + E    +++
Sbjct: 61  IR-----WEQDRARVSLEASTRYGDRRLTLELGPEG--RRAFANGVQVGRMTEFVGQVQV 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF--DS 180
               P    +  G    RRRFLD  +  ++P +   +  + R +  RNR L       D 
Sbjct: 114 VLFAPEDLDLVKGGPRVRRRFLDTELGQMEPLYLHHLSLYNRALLQRNRWLKASPLSPDD 173

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ---------KENFP-HIKLSLTG 230
              ++ + Q+A  G  +    +       + +  Y           +E F    + S++G
Sbjct: 174 DVLATFDGQLAFHGAHV----IHRRLRFLARLRAYAARIYSDIASGREEFALAYRSSVSG 229

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             +G    +   + +   + L   R  D     T +GPHR D+++ + D        S G
Sbjct: 230 VAEG---MTVEEMADTMQRALERNRAQDLRVGTTSVGPHRDDILL-FLDGREVHTSASQG 285

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE-DKRNALFRIVTDIGSQIFMTG 349
           +Q+ + + + LA    +    G  P+LLLD++ + LD+  +RN +  +   + + I  T 
Sbjct: 286 QQRTIALSLRLAEIDFMHEELGEYPVLLLDDVLSELDDLRQRNLVLGMSRKVQTVITTTS 345

Query: 350 TDK 352
            ++
Sbjct: 346 LNR 348


>gi|325678551|ref|ZP_08158162.1| DNA replication and repair protein RecF [Ruminococcus albus 8]
 gi|324109770|gb|EGC03975.1| DNA replication and repair protein RecF [Ruminococcus albus 8]
          Length = 379

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 158/367 (43%), Gaps = 34/367 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+++ F+N   + +    +  IF G N  GKTN++EAI   S  R FR  S  D   IG 
Sbjct: 6   LSVNGFKNLKGISIKPHEKINIFCGRNAQGKTNLIEAIWLCSGARSFR--STKDRRMIGD 63

Query: 70  PS--------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                     F ++F   E    +A  +IK +         + +N V ++   +L   L 
Sbjct: 64  DEQVMNIGLRFKNSFREQEIAFAMAKPNIKEKN--------VTLNGVKLKAPSKLFGGLN 115

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
                P    +  G    RR+F+D  V  I   +      +E L+  RN LL    +  +
Sbjct: 116 CVIFTPEDLELSKGSPDNRRQFIDLSVAQIKNSYSAVTYKYEALIERRNLLLKNINYGKA 175

Query: 182 WCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF------- 231
               +E    Q+A++G  I++ R      LS+      ++ +    KL ++ +       
Sbjct: 176 GKDELEMWDVQLAQMGAFISLHRYNYTKKLSAYAQMLYEEISGGSEKLDISYYSTVYDSE 235

Query: 232 -LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            LD K  +    LK+ Y + L +    D  +  T  G HR DLI     + +     S G
Sbjct: 236 MLD-KATEYTGELKDRYFEVLKNNISDDLRAGFTQKGVHRDDLICKINGRPVR-EDASQG 293

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + +   + + L+ A ++++     P++LLD++ + LD  ++  +   + D+  Q+F+T  
Sbjct: 294 QHRSAALIMKLSQAYILNDEIDDFPVILLDDVLSELDPSRQRFVISKIHDM--QVFITCC 351

Query: 351 DKSV-FD 356
           D ++ FD
Sbjct: 352 DMNIPFD 358


>gi|119714276|ref|YP_921241.1| recombination protein F [Nocardioides sp. JS614]
 gi|166220721|sp|A1SCL9|RECF_NOCSJ RecName: Full=DNA replication and repair protein recF
 gi|119534937|gb|ABL79554.1| DNA replication and repair protein RecF [Nocardioides sp. JS614]
          Length = 420

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 166/408 (40%), Gaps = 83/408 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++ +FR+YA+  +      T F+G NG GKTN++EAI +LS     R AS A + R
Sbjct: 3   VAHLSLHDFRSYATAEVELSPGVTAFIGRNGQGKTNLVEAIDYLSRLSSHRVASDAPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+       A V   +G   + +++E    RS R  ++N   +    +L   +R     
Sbjct: 63  AGADQAVVRAAVVR--DGRTAV-LEVELNPGRSNRA-RVNRSPLPRARDLVGLVRTVVFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL------------- 173
           P    +  G   +RRRFLD ++    PR      D++R++R RN LL             
Sbjct: 119 PEDLTLVKGDPADRRRFLDDLLVLRVPRLAGVRADYDRVLRQRNTLLKTARKGGFARKGG 178

Query: 174 ------------------------TEGYFDSSWCSS---------IEAQMAELGVKINIA 200
                                   T G   S   S           +A +A  G ++   
Sbjct: 179 FARKGGFAPLGPPEGRPEGPPEGRTGGSATSGPPSRSVALDTLAVWDAHLARTGAELLAE 238

Query: 201 RVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGK--FDQSFCALKEEYAKKLF---D 253
           R+ ++ AL      YV K  E            +D K  FD      +++  + L    +
Sbjct: 239 RLALVEALRP----YVGKAYETVARGATRDDAEIDYKPSFDLEGRTGRDDLVEALLAEVE 294

Query: 254 GRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGST------------GEQKVVLVGIF 300
            R+ D + R  +L+GPHR +L+       +T+ HGS             GE     + + 
Sbjct: 295 RRRGDELDRGVSLVGPHRDELL-------LTLGHGSPDSRLPVKGYASHGESWSFALALR 347

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           LA   L+    G  PIL+LD++ A LD ++R  L  +V     Q+ +T
Sbjct: 348 LAAYDLL-RADGDDPILILDDVFAELDTERRAQLADLVAG-AEQVLVT 393


>gi|288924856|ref|ZP_06418793.1| RecF protein [Prevotella buccae D17]
 gi|288338643|gb|EFC76992.1| RecF protein [Prevotella buccae D17]
          Length = 372

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 151/362 (41%), Gaps = 28/362 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I  ++N     +    +    +G NGVGKTN L+A+ +LS  R       + +  
Sbjct: 3   LRKLSIVNYKNIRVANVDLSPKMNCLIGHNGVGKTNFLDAVYYLSFCRSAFNPVDSQLIT 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G   F        G E    I   ++    +  +  +      +    L++H+ +  LV
Sbjct: 63  HGEDFFVLEGEYDTGAEDSEQIYCGMKRGTKKHFKRNK------KEYKRLSQHIGLIPLV 116

Query: 127 ---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSS 181
              PS   +  G S ERR  LD ++   D  +   +  + + ++ RN LL   +G  D +
Sbjct: 117 FVSPSDTSLIEGASEERRHLLDVVIAQYDRSYMESLAAYNKALQQRNALLKTEDGEPDET 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E +MA  G  I   R + +  L  +  +  Q  +     +SL          S C
Sbjct: 177 LMEIWEEEMARNGELIYQKRNDFVRELIPVFQDIYQHISQQREIVSLKYV-------SHC 229

Query: 242 ---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               L E   +  F  R +      +L G HR DL +   D       GS G+ K  ++ 
Sbjct: 230 QRGPLLEVIRRDRFKDRAVGY----SLHGVHRDDLEM-LIDGYQLKKEGSQGQNKTFVLA 284

Query: 299 IFLAHARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD 356
           + LA    + NTT G  P+LLLD+I   LD  +   + ++V+ D   QIF+T T++   D
Sbjct: 285 LKLAQFNFLKNTTSGTTPLLLLDDIFDKLDAQRVEQIVKLVSGDNFGQIFITDTNRDHLD 344

Query: 357 SL 358
            +
Sbjct: 345 KI 346


>gi|315607883|ref|ZP_07882876.1| recombination protein F [Prevotella buccae ATCC 33574]
 gi|315250352|gb|EFU30348.1| recombination protein F [Prevotella buccae ATCC 33574]
          Length = 372

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 151/362 (41%), Gaps = 28/362 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I  ++N     +    +    +G NGVGKTN L+A+ +LS  R       + +  
Sbjct: 3   LRKLSIVNYKNIRVTNVDLSPKMNCLIGHNGVGKTNFLDAVYYLSFCRSAFNPVDSQLIT 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G   F        G E    I   ++    +  +  +      +    L++H+ +  LV
Sbjct: 63  HGEDFFVLEGEYDTGAEDSEQIYCGMKRGTKKHFKRNK------KEYKRLSQHIGLIPLV 116

Query: 127 ---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSS 181
              PS   +  G S ERR  LD ++   D  +   +  + + ++ RN LL   +G  D +
Sbjct: 117 FVSPSDTSLIEGASEERRHLLDVVIAQYDRSYMESLAAYNKALQQRNALLKTEDGEPDET 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E +MA  G  I   R + +  L  +  +  Q  +     +SL          S C
Sbjct: 177 LMEIWEEEMARNGELIYEKRNDFVRKLIPVFQDIYQHISQQREIVSLKYV-------SHC 229

Query: 242 ---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               L E   +  F  R +      +L G HR DL +   D       GS G+ K  ++ 
Sbjct: 230 QRGPLLEVIRRDRFKDRAVGY----SLHGVHRDDLEM-LIDGYQLKKEGSQGQNKTFVLA 284

Query: 299 IFLAHARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD 356
           + LA    + NTT G  P+LLLD+I   LD  +   + ++V+ D   QIF+T T++   D
Sbjct: 285 LKLAQFNFLKNTTSGTTPLLLLDDIFDKLDAQRVEQIVKLVSGDNFGQIFITDTNRDHLD 344

Query: 357 SL 358
            +
Sbjct: 345 KI 346


>gi|78780050|ref|YP_398162.1| DNA replication and repair protein RecF [Prochlorococcus marinus
           str. MIT 9312]
 gi|78713549|gb|ABB50726.1| DNA replication and repair protein RecF [Prochlorococcus marinus
           str. MIT 9312]
          Length = 297

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 127/262 (48%), Gaps = 14/262 (5%)

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
           +N+ +++   E+  ++R      +   I       RR ++D++VF ++P +   +  F R
Sbjct: 28  VNESILKKQSEIKNYIRSVCFCSNDINIVRSEPSYRRTWIDKVVFQLEPVYLDLISRFNR 87

Query: 165 LMRGRNRLL-TEGYFDSS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           L++ R+    +E + +S     C S + QM+ +  +I   R   +  +   I EY     
Sbjct: 88  LLKQRSHFWRSESFLNSQSSDICESFDMQMSIISTRIFRRRRRALLKIKPYI-EYWHNHL 146

Query: 221 FPHIKLSLTGFLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
               +     +L G  + S        + ++ A++L + R +++++ +   GPHR D  +
Sbjct: 147 SKSKEQIGINYLSGIQNISPEEEEEEVISKKIAEQLLNQRSIEALTGKCNFGPHRDD--I 204

Query: 276 DYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           ++    I++  +GS+G+Q+  ++ + +A    +S T   +PIL+LD++ A LD  ++N L
Sbjct: 205 EFLINNISVRKYGSSGQQRTFILALKMAELDFLSKTLNVSPILILDDVLAELDITRQNLL 264

Query: 335 FRIVTDIGSQIFMTGTDKSVFD 356
              V    SQ F++ T    F+
Sbjct: 265 LNSVGK-DSQCFISATHLDKFN 285


>gi|260885575|ref|ZP_05897039.1| RecF protein [Prevotella tannerae ATCC 51259]
 gi|260851611|gb|EEX71480.1| RecF protein [Prevotella tannerae ATCC 51259]
          Length = 342

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 148/332 (44%), Gaps = 29/332 (8%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI--GSPSFFSTFARVEGMEGLADIS 89
           FVGDNG+GKTN+L+AI +LS  +  R  S  DVT +  G  +F         ++GL D  
Sbjct: 5   FVGDNGMGKTNLLDAIYYLSFCKSAR--SSTDVTNVKHGEQAFM--------LQGLYDDD 54

Query: 90  IKLETR-----DDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL 144
              E +      +   + L+ N   I+   E    + +  + PS   + +G S  RRRF+
Sbjct: 55  TGGEDKIAIGYHEGRRKQLRRNGKDIKRFAEHIGTIPLVMISPSDSELVTGGSDNRRRFM 114

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           D ++   D  +   ++ +E+ +R RN LL  E   ++   S IE  M+     I   R  
Sbjct: 115 DTVIAQYDATYLEALMRYEKTLRQRNALLKKEEEPEADVISIIEDIMSRDAAIIYQGRKL 174

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
            +   ++      ++  +   ++++     G   +    + E+Y       R  + +   
Sbjct: 175 FVETFTAFFQGIYRELCYDPEQVNIVYESHGNRGE-LKPMLEQY-------RSRERLVGY 226

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA-HARLISNTTGFAPILLLDEI 322
           TL G H+ DL++ Y +        S G+ K   + + LA +  L + ++   P+LLLD+I
Sbjct: 227 TLHGIHKDDLLL-YINGYPVKQEASQGQTKTYFIALKLAQYVYLRTKSSLRQPLLLLDDI 285

Query: 323 SAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS 353
              LD  +   + R   +    QIF+T T K 
Sbjct: 286 FDKLDAGRVEHIIRYAAEAQFGQIFITDTSKE 317


>gi|297622419|ref|YP_003703853.1| DNA replication and repair protein RecF [Truepera radiovictrix DSM
           17093]
 gi|297163599|gb|ADI13310.1| DNA replication and repair protein RecF [Truepera radiovictrix DSM
           17093]
          Length = 352

 Score = 73.2 bits (178), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 151/358 (42%), Gaps = 41/358 (11%)

Query: 7   IKFLNISE--FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ L++ +  +RN  + R+ F    T  VG N  GK+N+LEA+     G        A+ 
Sbjct: 1   MRLLSLQQLNYRNLNTPRVTFGGGVTAIVGRNAAGKSNLLEAVYLGLTGE-LPHGKIAEA 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETR------DDRSVRCLQINDVVIRVVDELNK 118
            R+G    F +  ++E   GL+ + + L         D +SVR  ++  V   V+     
Sbjct: 60  VRLGESEGFVSV-KLEHGGGLSTVQVGLAPGRKTVRLDGQSVRAFELARVSAAVL----- 113

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
                 + P    +  G    RR +LD ++  +  R+     ++ R++  RN  L    +
Sbjct: 114 ------ITPEDAELVHGPPALRRGYLDTLLSRLSLRYALLQREYTRVVEQRNAALKSLPY 167

Query: 179 DSSWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDG- 234
                     +   LG +I   R   +  +  ++      +  ++ P + +S      G 
Sbjct: 168 GDPTLEVWTERFVALGDEITALRERALARVGEVARASYAEISGDDKP-LGVSHRAAAQGV 226

Query: 235 KFDQSFCALK-EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
               +  A + EE A+ +            T++GPHR DL +     ++  A+GS GE +
Sbjct: 227 GLRAALAATQHEERARGV------------TVVGPHRDDLELTLAGHSVQ-AYGSRGEAR 273

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            V + + +A   L+      AP+LL+D+ +A LD  +R  L ++      Q  ++GT+
Sbjct: 274 TVALALRVAEYTLLQEKLREAPVLLIDDFTAELDASRREFLLQLAAR-APQALVSGTE 330


>gi|288939767|ref|YP_003442007.1| DNA replication and repair protein RecF [Allochromatium vinosum DSM
           180]
 gi|288895139|gb|ADC60975.1| DNA replication and repair protein RecF [Allochromatium vinosum DSM
           180]
          Length = 358

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 145/355 (40%), Gaps = 30/355 (8%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M     ++ L I   RN   L L  D +  +  G NG GKT++LEAI  L+ GR FR   
Sbjct: 1   MDPEPGLRSLRIESLRNIRRLDLAPDTRTLLLTGANGAGKTSVLEAIYLLARGRTFRGTK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              +T  G   F++   RVEG    +D   + ++       +VR +           +  
Sbjct: 61  AGPLTTQG--EFYT---RVEGRYQPSDRDVVRLRYVKEGATAVRDIHPPLWAETGGADWR 115

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
             L++  +  +   +  G    RRRFLD  VF ++ R  +   DF R++  RN  +  G 
Sbjct: 116 SPLQVKLVGENAQILLDGDPSLRRRFLDWNVFHVEHRFAQVQKDFTRVLMQRNAAIRSG- 174

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSL-TGFLDGK 235
              S     + +   L   ++  R        +  ++      F H   L    G+ DG+
Sbjct: 175 --GSQLGLWDRRFIALAESVDRQRAAFHAEWRTCFLDLCGDYPFLHGTDLRYRRGWPDGR 232

Query: 236 -FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
              ++  AL ++   + +           TL GP R+D  +D  +     + G T   K+
Sbjct: 233 ELGETLVALADQELARGY-----------TLAGPSRADFRIDPGEGRRGFSRGQT---KI 278

Query: 295 VLVGIFLAHARLISNTTGFAPIL-LLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           V+  + LA  R +    G  P++ LLD++ A LD      L+      G+Q+  T
Sbjct: 279 VVALLQLAAER-VHRAHGREPVIWLLDDLEAELDRTLAERLWSAFGATGNQVIAT 332


>gi|317050202|ref|YP_004111318.1| DNA replication and repair protein RecF [Desulfurispirillum indicum
           S5]
 gi|316945286|gb|ADU64762.1| DNA replication and repair protein RecF [Desulfurispirillum indicum
           S5]
          Length = 343

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 138/322 (42%), Gaps = 44/322 (13%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FR  A   L F        G NG GKT+ LE IS  + G+ FR  +  +  R GS  
Sbjct: 7   VRNFRCIADAVLSFTPGINALCGVNGSGKTSFLEVISICANGKSFRTNTLRECVRKGSDG 66

Query: 72  F----------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           F            TF   + +  L    +  E R +R  + + IN V++           
Sbjct: 67  FSLTLENDRHILQTFLLHKNVRRL----LIGEHRPERLSQYININTVLV----------- 111

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
              L P    + +  S  RR+F+DR VF   P +   +    R+++ RN LL +   D S
Sbjct: 112 ---LSPEDIDLVAHSSGMRRKFIDRGVFEQHPEYLSTLSYLHRILKNRNALLRQK--DHS 166

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSLTGFLDGKF--DQ 238
                   + +  ++I+  R +    L   +   + + ++P  I ++     D ++   Q
Sbjct: 167 TLPYWNDLLCQYALQIHEYRKKYTQQLQLSVNSIISQMDYPKGISITYINSGDDEYTDTQ 226

Query: 239 SFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +F  AL+++Y+ +   G         TLIGPH+ ++ V   D+     + S G+QK+V +
Sbjct: 227 AFLRALEKKYSDEKRYG--------YTLIGPHKDEITVT-IDELSAGKYASYGQQKMVAM 277

Query: 298 GIFLAHARLISNTTGFAPILLL 319
            + LA A LI       P+LL+
Sbjct: 278 IMKLAQAELIQQHQK-EPVLLV 298


>gi|153807585|ref|ZP_01960253.1| hypothetical protein BACCAC_01867 [Bacteroides caccae ATCC 43185]
 gi|149129947|gb|EDM21159.1| hypothetical protein BACCAC_01867 [Bacteroides caccae ATCC 43185]
          Length = 369

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 158/365 (43%), Gaps = 36/365 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + + F A+   F G NG+GKTN+L+A+ FLS    F ++S   +  
Sbjct: 3   LKRISILNYKNLEEVEIDFSAKLNCFFGQNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58

Query: 67  IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                   FF      E  +G  + I   ++ R  +  +  +      R  D +   L +
Sbjct: 59  QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYGRFSDHIG-FLPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
             + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +  
Sbjct: 116 VMVSPADSELIAGGSEERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKSEFPVEEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  MA+ G  +   R   I            KE  P I  S   F+    D+   
Sbjct: 176 LFLVWEEMMAQAGEVVFRKREAFI------------KEFIP-IFQSFYSFISQ--DKESV 220

Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            L  E +A+       L   R+ D +   +L G H+ +L +   +  I    GS G+ K 
Sbjct: 221 GLSYESHARDTSLLDVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 279

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS 353
            LV + LA    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++ 
Sbjct: 280 YLVALKLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRE 339

Query: 354 VFDSL 358
             D +
Sbjct: 340 HLDRI 344


>gi|301165374|emb|CBW24945.1| putative DNA replication and repair protein RecF [Bacteriovorax
           marinus SJ]
          Length = 370

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 160/360 (44%), Gaps = 24/360 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR-ASYADV 64
           KI  L ++ FRN     + F++     +G+NG GKTNILEA+  LS  + FR+  ++   
Sbjct: 5   KISKLQVTNFRNLQPDIIEFNSGINCILGENGNGKTNILEALHVLSTRKSFRKNTAFPQF 64

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             I        F+ V   E    +S+  +  D ++         + R +D     +++ +
Sbjct: 65  LGIDCEQPEIIFSSVFLDEHSNKMSLSAKM-DAKTTHWFVDGQPMKRKLD-----IKLVF 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
           + P     F   S  RR+++D+ +  ID  +++ +  +   +R RN LL++    Y +  
Sbjct: 119 INPFDSYAFHNTSSFRRQWMDQHISQIDSNYKKCLSRYNSSLRFRNSLLSKKPAKYLEQ- 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH---IKLSLTGFLDGKFDQ 238
              +I+ ++A     +   R++ ++ + S   +   KE F     +K++L   + G  + 
Sbjct: 178 -IRAIDLELARYSCILTNTRLKFLSEIESFCTQTF-KEIFSEEHLLKITLDSRVIGASED 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + +E   K       D +   T    H+ D ++ + D   +  + S G+QK+  + 
Sbjct: 236 DIYQMLQERLPK-------DEIVGHTTYCVHKDDYVLLF-DGLNSFEYCSLGQQKMSYLS 287

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           +  A+  L        P++L+D++S  LD+++   L   +     Q+ +T  ++   + L
Sbjct: 288 LLFAYIELFRYNFNSFPMVLIDDVSGELDKNRWQKLINYLERSSFQVLITTANEKFKEEL 347


>gi|254431064|ref|ZP_05044767.1| DNA replication and repair protein RecF [Cyanobium sp. PCC 7001]
 gi|197625517|gb|EDY38076.1| DNA replication and repair protein RecF [Cyanobium sp. PCC 7001]
          Length = 391

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 139/299 (46%), Gaps = 17/299 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           I+++ L + +FRN   L L  +A   + +G NG GK+N+LE +  L   R  R  S  D+
Sbjct: 23  IRLERLELLQFRNITRLELNLEASRLLVLGPNGEGKSNLLEGVELLGSLRTHRTGSDRDL 82

Query: 65  TRIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G      + AR+ G+    + + ++L  R  R  R  +    + R +D L     +S
Sbjct: 83  IQQG-----CSHARIRGLTARGELLQLELRHRGGREAR--RNGKPLERQLDLLGDLRCVS 135

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +    ++ +  G    RR++LDR+V  ++P +   +  + RL+R R++LL  G       
Sbjct: 136 FSALDLE-LVRGEPAGRRQWLDRVVLQLEPLYGELLSRYGRLLRQRSQLLRRGLGGGEQA 194

Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFD 237
             ++A   QMA +G +++  R   +  L  L   + Q+ +     L++  +  G   + D
Sbjct: 195 GLLDAFDQQMAVVGTRLHRRRHRALQRLEPLAAHWQQRLSGGRDALAIA-YRSGTHLEGD 253

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           ++    +     +L   R  +    +  +GPHR ++ +    +     +GS G+Q+ ++
Sbjct: 254 EAEEPWRAALHSQLAAQRDTELRLGQCSVGPHRDEVALSLGGQPAR-RYGSAGQQRTLV 311


>gi|308235535|ref|ZP_07666272.1| DNA replication and repair protein recF [Gardnerella vaginalis ATCC
           14018]
 gi|311114016|ref|YP_003985237.1| recombination protein F [Gardnerella vaginalis ATCC 14019]
 gi|310945510|gb|ADP38214.1| recombination protein F [Gardnerella vaginalis ATCC 14019]
          Length = 422

 Score = 72.4 bits (176), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 154/369 (41%), Gaps = 51/369 (13%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FR+++S  L F  +  +  G NG+GKTNI+EAI  +S G   R +S   +    +  
Sbjct: 8   LDHFRSWSSCVLDFSPKINVLFGSNGLGKTNIVEAIEVISTGTSHRISSLMPLIECNNSC 67

Query: 72  F-----FSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIRVVDELNKHLRIS 123
                    F   +  E   +++I  +  +     S + L + D++  V         IS
Sbjct: 68  ATIRLNTKNFDNNDLDETTYELTINSKGANRARINSGKSLYMKDIIGLVK-------SIS 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---------- 173
           +     + IFS  ++ RR F+D+    + P + + + ++  + + R  LL          
Sbjct: 121 FTPRDQNLIFSDPNI-RRTFIDQAGALLIPNYLQVLQEYNHIAKQRAYLLKSLSNNNLAS 179

Query: 174 -TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI--KLS-LT 229
            T GY   S       +  E G+ +   R ++IN L+ +         FP I  KLS  +
Sbjct: 180 STNGYNPISDLEIWTGKFIESGIILTKNRKKIINLLNEI---------FPKIVDKLSRSS 230

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR----------TLIGPHRSDLIVDYCD 279
            F   +++ SF  L+ E  +  F    +    +R           LIGPHR D  +   +
Sbjct: 231 NFASIQYNPSFEELEVESKEDYFPQTAISEHFQRIYAGEVARGYNLIGPHRDDFTI-LIN 289

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
                   S GE   + + + +A  + +       PI++LD++ + LDE +R  +     
Sbjct: 290 NHPAKEFASNGEAWTLALALKMALFKTLEEKNNQKPIVILDDVFSQLDESRRKQILEFAK 349

Query: 340 DIGSQIFMT 348
           +   Q+F+T
Sbjct: 350 E-QEQVFIT 357


>gi|281419667|ref|ZP_06250666.1| RecF protein [Prevotella copri DSM 18205]
 gi|281406196|gb|EFB36876.1| RecF protein [Prevotella copri DSM 18205]
          Length = 405

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 159/371 (42%), Gaps = 47/371 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  F+N  S  L    +    +G NG+GKTN L+AI +LS  R    +  + +  
Sbjct: 43  LKNISIINFKNIKSANLELSPKINCLIGHNGMGKTNFLDAIYYLSFCRSAYNSIDSQIIT 102

Query: 67  IGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              P FF      +  +G + ++   ++    +  +  +      +    L++H+ +  L
Sbjct: 103 HDEP-FFMLEGNYDNDKGEIENVYCGMKRGTKKHFKRNK------KEYKRLSQHIGLIPL 155

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSS 181
           +   PS   +  G S ERR+ +D ++   D  +   + ++ + ++ RN LL  E   D +
Sbjct: 156 ILVSPSDVSLIEGGSEERRKLMDVVISQYDYSYIEALSNYNKALQQRNALLKMEEEPDIT 215

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E QMA  G  +   R   ++ L  L  +  Q+             + G  +Q   
Sbjct: 216 ILELWEQQMASNGELLYQKRQAFVDELVPLFQQIYQQ-------------ISGDKEQ--- 259

Query: 242 ALKEEYAKKLFDGRKMDSMSR---------RTLIGPHRSDL---IVDYCDKAITIAHGST 289
            ++  Y      G  +D + R          +L G HR DL   + DY  K      GS 
Sbjct: 260 -VRLHYVSHCQRGPLLDVIQRDRFKDRAVGYSLHGVHRDDLEFLLGDYPMKR----EGSQ 314

Query: 290 GEQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIVT-DIGSQIFM 347
           G+ K  ++ + LA    +  T+    P+LLLD+I   LD  +  A+ ++V  D   QIF+
Sbjct: 315 GQNKTFVIALKLAQFTFLQRTSSNTLPLLLLDDIFDKLDAQRVEAIVKLVAGDHFGQIFI 374

Query: 348 TGTDKSVFDSL 358
           T T++   D +
Sbjct: 375 TDTNRDHLDKI 385


>gi|291278435|ref|YP_003495270.1| hypothetical protein DEFDS_0002 [Deferribacter desulfuricans SSM1]
 gi|290753137|dbj|BAI79514.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 333

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 156/352 (44%), Gaps = 34/352 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I   RN   L + FD +    +G+NG GKT ILE+I      + FR +   ++  I S
Sbjct: 6   LKIVNVRNIEHLSIKFDHKRNYIIGENGSGKTTILESIVTSLYRKSFRTSKIEELKSINS 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P  F + + +    GL + +      D + +    IN+  I  +  +  H  +    P  
Sbjct: 66  P--FLSISSIFIKNGL-NYTFTFNYSDKKKLHL--INNKKIDKLLNIISHFPLIVHSPYY 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           + +    +  +  FLD++V   D  ++  +  F +L++ + +L+TE   D+   ++I   
Sbjct: 121 EGLTDKSNRNKLTFLDKIVILADKSYKENLSKFNKLLKHKRKLITESN-DTKLINTINDL 179

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENF-PHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++E+         E+I         Y +++NF   + + L  +   K  +    LK+   
Sbjct: 180 LSEI--------YELI---------YKKRKNFLEQLNMRLKDYESTK--KISIELKKNKT 220

Query: 249 KKLFDGRKMDSMS-RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
           K +F    ++ ++ ++ L+  +   + +   +K I     S G++K + + I  +  ++I
Sbjct: 221 KDVF----LNELALKKILLTQYSQKIYITSENKNIE-NLLSFGQKKELSIFIIYSFLKII 275

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
                   I+LLD+  A LDE K    + I +D  +Q+ +TG D      +N
Sbjct: 276 EEIIKDGIIILLDDFEAGLDESKVKNFYEIFSD--NQLILTGVDNKYLSGIN 325


>gi|88705398|ref|ZP_01103109.1| DNA replication and repair protein recF [Congregibacter litoralis
           KT71]
 gi|88700488|gb|EAQ97596.1| DNA replication and repair protein recF [Congregibacter litoralis
           KT71]
          Length = 352

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 139/334 (41%), Gaps = 18/334 (5%)

Query: 27  AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLA 86
           A H +  G NG GKT++LEA   L   R FR      +   G  S+     R     G  
Sbjct: 2   ALHNVIYGVNGSGKTSLLEAAHILGTARSFRSGGAKSLISHGEESYVVRGERRSPTGGSM 61

Query: 87  DISIKLETRDDRSVRCL-QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            I ++ E     S+R   + +  V R+ DEL   L  S    S D +  G    RRRFLD
Sbjct: 62  AIGVQREKAGAISLRLAGEPSRSVSRLADELPLLLINS---DSFD-LLVGEPANRRRFLD 117

Query: 146 RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
             VF ++   R     F+R +  RN LL     D S        +A    +++  R   +
Sbjct: 118 WGVFHVEHELRDSRQRFQRALTQRNHLLRRAKLDPSELQVWTRDLAVHAERVSSGRERFL 177

Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
            +L   + E +  E  P I      +  G +D S       Y + L      D     T 
Sbjct: 178 ESLRE-VFEPLIAELAPEIGPVALVYRRG-WDAS-----SSYEEVLQRSLTSDQEQGFTQ 230

Query: 266 IGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
            GP R+D+   V     A T+   S G+QK+++  + LA  +++++  G   + L+D++ 
Sbjct: 231 TGPQRADIRVTVGGYSAAETL---SRGQQKLLVCALKLAQGQILASEQGNV-LYLIDDLP 286

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           + LD ++   + R +  +  Q  +T   +S   +
Sbjct: 287 SELDAERCERVCRTLAAMQVQTLITCVTRSAIPA 320


>gi|261493354|ref|ZP_05989880.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496620|ref|ZP_05993000.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307823|gb|EEY09146.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310998|gb|EEY12175.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 372

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 147/355 (41%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I+ FRN     L F       VG NG GKT++LE+I +L  GR F+      +     
Sbjct: 17  LLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIFYLGHGRSFKSHISNRIIHYDK 76

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVDELNKHLRISWLVPS 128
             F      + G    A  S  +  +  RS    L+IN      + +L   L +  + P 
Sbjct: 77  DDFV-----LHGKIDEAKHSWSVGIQKFRSGETTLKINGEDGNKIADLAHLLPMQVITPE 131

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSS 185
              + +G    RR FLD  +F   P       +  RL++ RN  L +   Y +  +W   
Sbjct: 132 GLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQRNSALQQVRSYQELKAW--- 188

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++ +    ++  R E   AL   I +  Q    P I++ L+      F Q +     
Sbjct: 189 -DIELVKTTYAVSEMRAEYAEALRPEIEKTCQF-FLPEIEIGLS------FHQGW-EKGA 239

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           +YA+ L  G + D     T+IG  ++D         +     S G+ K+++  + LA   
Sbjct: 240 DYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQGE 298

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   +   D LN+
Sbjct: 299 HLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQ---DQLNQ 350


>gi|254360631|ref|ZP_04976780.1| DNA recombination protein RecF [Mannheimia haemolytica PHL213]
 gi|153091171|gb|EDN73176.1| DNA recombination protein RecF [Mannheimia haemolytica PHL213]
          Length = 361

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/355 (24%), Positives = 147/355 (41%), Gaps = 25/355 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I+ FRN     L F       VG NG GKT++LE+I +L  GR F+      +     
Sbjct: 6   LLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIFYLGHGRSFKSHISNRIIHYDK 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVDELNKHLRISWLVPS 128
             F      + G    A  S  +  +  RS    L+IN      + +L   L +  + P 
Sbjct: 66  DDFV-----LHGKIDEAKHSWSVGIQKFRSGETTLKINGEDGNKIADLAHLLPMQVITPE 120

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFD-SSWCSS 185
              + +G    RR FLD  +F   P       +  RL++ RN  L +   Y +  +W   
Sbjct: 121 GLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQRNSALQQVRSYQELKAW--- 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++ +    ++  R E   AL   I +  Q    P I++ L+      F Q +     
Sbjct: 178 -DIELVKTTYAVSEMRAEYAEALRPEIEKTCQF-FLPEIEIGLS------FHQGW-EKGA 228

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           +YA+ L  G + D     T+IG  ++D         +     S G+ K+++  + LA   
Sbjct: 229 DYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQGE 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   +   D LN+
Sbjct: 288 HLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQ---DQLNQ 339


>gi|332071497|gb|EGI81991.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA41301]
          Length = 255

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 118/260 (45%), Gaps = 17/260 (6%)

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-F 178
           + +    P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      
Sbjct: 1   MNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKI 60

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP------HIKLSLTGFL 232
           D ++ S ++ Q+ + G ++   R++ I  L S    + +K++F        + +S    +
Sbjct: 61  DETFLSVLDDQLVDYGCRVMNHRLDFIKKLES----FGRKKHFELSNQIEELSISYQSSV 116

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           +    Q+   L E +   L   R  D   + T +GPHR D  + +    +  + GS G+ 
Sbjct: 117 NITDKQN---LSESFKIALEKSRSRDLFKKNTGVGPHRDD--ISFYINGMDASFGSQGQH 171

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + +++ I LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T  
Sbjct: 172 RSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSL 230

Query: 353 SVFDSLNETAKFMRISNHQA 372
               +L E      I + +A
Sbjct: 231 DHLQNLPENLSIFTIQDGKA 250


>gi|317054735|ref|YP_004103202.1| DNA replication and repair protein RecF [Ruminococcus albus 7]
 gi|315447004|gb|ADU20568.1| DNA replication and repair protein RecF [Ruminococcus albus 7]
          Length = 376

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 157/380 (41%), Gaps = 31/380 (8%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+++ F+N  ++ +    +  IF G N  GKTN++EAI   S  R FR  S  D   IG 
Sbjct: 6   LSVNGFKNLKNIEIKPHEKINIFCGKNAQGKTNLIEAIWLCSGARSFR--STKDRRMIGD 63

Query: 70  P--------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                    SF ++F   +    +A  +IK     ++SV    +N V ++   +L   L 
Sbjct: 64  DEQVMEICLSFKNSFREQDIRYAMAKPNIK-----EKSVF---LNGVKLKAPSKLFGGLN 115

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
                P    +  G    RRRF D  V  I   +      +E+L+  RN LL    +   
Sbjct: 116 CVIFTPEDLELSKGSPDNRRRFADLSVSQIKNSYSAVTEKYEKLIDQRNTLLKNISYGRG 175

Query: 182 WCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF------- 231
               +E    Q+A++G  I++ R      L ++  +   + +    +L +  +       
Sbjct: 176 RREELEMWDIQLAQMGAYISLLRFNYTRKLCAIAKKLYSEISGGSEELDIDYYSTVYDTK 235

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           L G        L E+Y   L +    D  +  T  G HR DLI       +     S G+
Sbjct: 236 LLGAASVYTGELTEQYLNVLKNNIDDDIRAGFTQKGVHRDDLICRINGSPVR-EDASQGQ 294

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + V + + L+ A ++       P++LLD++ + LD  ++  +   + D+  Q+F+T  D
Sbjct: 295 HRSVALIMKLSQAYILHEEIDDHPVILLDDVLSELDPSRQKFVISKIHDM--QVFITCCD 352

Query: 352 KSVFDSLNETAKFMRISNHQ 371
            ++     +  K   I   Q
Sbjct: 353 MNIPFDEKQHGKIFNIEKGQ 372


>gi|258510024|ref|YP_003183458.1| DNA replication and repair protein RecF [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257476750|gb|ACV57069.1| DNA replication and repair protein RecF [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 371

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 151/363 (41%), Gaps = 30/363 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + + +FRNYA   +       + VG+NG GKTN LEA+  ++ G+  R     D+
Sbjct: 1   MDIRRVELHDFRNYAKAEIELSPGVNVLVGENGQGKTNALEAMLLIAVGKSHRAHRDRDL 60

Query: 65  TRIGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R     +    AR+  E      D  + LE   +   R    N V +  + E    +++
Sbjct: 61  IR-----WEQDRARILLEASTRYGDRRLTLELGPE--GRRAFANGVQVGRMTEFVGQVQV 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF--DS 180
               P    +  G    RRRFLD  +  ++P +   +  + R +  RNR L       D 
Sbjct: 114 VLFAPEDLDLVKGSPRVRRRFLDTELGQMEPLYLHHLSLYNRALLQRNRWLKTAPLSPDD 173

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ---------KENFP-HIKLSLTG 230
              ++ + Q+A  G  +    +       + +  Y           +E F    + S++G
Sbjct: 174 DVLATFDRQIAFHGAHV----IHRRLRFLARLRAYAARIYSDIASGREEFALAYRSSVSG 229

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             +G    S   + +   + L   R  D     T  GPHR D+++ + D        S G
Sbjct: 230 VEEG---MSVEEMADTVQRALEKNRAQDLRFGTTSAGPHRDDILL-FLDGREVHTAASQG 285

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE-DKRNALFRIVTDIGSQIFMTG 349
           +Q+ + + + LA    +    G  P+LLLD++ + LD+  +RN +  +   + + I  T 
Sbjct: 286 QQRTIALSLRLAEIDFMHEELGEYPVLLLDDVLSELDDLRQRNLVLGMSRKVQTVITTTS 345

Query: 350 TDK 352
            ++
Sbjct: 346 LNR 348


>gi|282889709|ref|ZP_06298248.1| hypothetical protein pah_c004o056 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500283|gb|EFB42563.1| hypothetical protein pah_c004o056 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 236

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 5/164 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L++ +FR+Y   +  F     +  G N +GKT ILEAI FL  GR FR +   D+ + G+
Sbjct: 6   LHLHQFRSYREAKFTFSPSINLICGPNAIGKTTILEAIHFLMTGRSFRTSQINDLIQKGT 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            S+FS    +E       I  KL+   +   R + +N         L        + P  
Sbjct: 66  -SYFS----IEASFIKQGIEQKLKIFYNGKERKIVLNQTPYYSFTHLLGMFYGVCMSPDD 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
             +  G  + RR FLD  +   DP +  ++  F R MR RN LL
Sbjct: 121 SALIKGAPLMRRSFLDLQLAQSDPLYVHKLTRFTRAMRQRNYLL 164


>gi|332071306|gb|EGI81801.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA17545]
          Length = 199

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 93/200 (46%), Gaps = 6/200 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++  
Sbjct: 3   LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIH 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                       + G+      SI LE    +  R  ++N +    + +   H+ +    
Sbjct: 63  FDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ S 
Sbjct: 118 PEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFLSV 177

Query: 186 IEAQMAELGVKINIARVEMI 205
           ++ Q+ + G ++   R++ I
Sbjct: 178 LDDQLVDYGCRVMNHRLDFI 197


>gi|325297260|ref|YP_004257177.1| DNA replication and repair protein recF [Bacteroides salanitronis
           DSM 18170]
 gi|324316813|gb|ADY34704.1| DNA replication and repair protein recF [Bacteroides salanitronis
           DSM 18170]
          Length = 372

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 164/381 (43%), Gaps = 32/381 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F  +    +G NG+GKTN+++A+ +LS    F +++   +  
Sbjct: 3   LKRISILNYKNLEQVELAFSKKLNCIIGKNGMGKTNLMDAVYYLS----FCKSATNPIDS 58

Query: 67  ---IGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
              +    FF    F   +G E   ++   L+ R  +  +  +      +    L+ H+ 
Sbjct: 59  QNILHERDFFVIQGFYETDGGEP-EEVYCGLKRRQKKQFKRNK------KEYSRLSDHIG 111

Query: 122 ISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGY 177
           +  LV   P+   + +G S ERRRF+D ++   D  +   +I + + ++ RN LL  E  
Sbjct: 112 LIPLVMVSPADSWLIAGGSEERRRFMDVVISQFDREYLDALIRYNKALQQRNALLKAEIE 171

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            +    +  E  MA  G  +   R + ++    +   Y    +    ++SL         
Sbjct: 172 PEEELMALWEEAMASTGKLVFQKRKDFVDEFIPVFQSYYAYISQGREQVSLMYESHAAHG 231

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                LKE         R+ D +   +  G H+ DLI++     +    GS G+ K  L+
Sbjct: 232 NLLQLLKE--------SRQRDRILGYSTKGIHKDDLIMELGGFPMK-REGSQGQNKTYLI 282

Query: 298 GIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVF 355
            + LA    +        PI+LLD+I   LD  +   + ++V  D   QIF+T T++   
Sbjct: 283 ALKLAQFDFLKRAGNRTVPIVLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHL 342

Query: 356 DS-LNETAKFMRISNHQALCI 375
           D  L+E  +   +   +  C+
Sbjct: 343 DKILSEVGEDYNLFEVEGGCV 363


>gi|148238788|ref|YP_001224175.1| DNA replication and repair protein RecF [Synechococcus sp. WH 7803]
 gi|147847327|emb|CAK22878.1| DNA replication and repair protein RecF [Synechococcus sp. WH 7803]
          Length = 365

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 160/354 (45%), Gaps = 20/354 (5%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           + EFRN+  L+L  +A   + +G NG+GK+N+LE++  L   R  R +  AD+    +  
Sbjct: 1   MQEFRNHCHLQLEIEAPRLLVIGSNGIGKSNLLESVELLGSLRSHRSSQDADLIHWDASR 60

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
                + V+      D  ++LE R     +  +   V+ R +D +   LR          
Sbjct: 61  ALLRASCVD------DTEVELELRRRGGRQARRNGKVLQRQMDLIGP-LRCVGFSALDLH 113

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSI 186
           +  G    RR +LDR+V  ++P +   +  + RL+R R++    G   +S        S 
Sbjct: 114 LVRGEPALRRHWLDRVVLQLEPVYAELIGRYNRLLRQRSQFWRRGGGGTSVEHQALLDSF 173

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFCA 242
           + QMA +  +I+  R   ++ L  L   +  + +  H +L L       L+G+  +    
Sbjct: 174 DIQMALVCTRIHRRRRRALSRLEPLAAAWQSRLSKGHEQLELRYSPGSVLEGEEAEEPWR 233

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L  E  ++L   R  +       +GPHR D I    +  +    GS+G+Q+ +++ + LA
Sbjct: 234 LAIE--QQLHRQRSEEERLGSCRVGPHR-DEIDMLLNGTVARRFGSSGQQRTLVLALKLA 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
              L+    G  P+LLLD++ A LD  ++ AL   V D   Q  ++ T    F+
Sbjct: 291 ELELVGELCGHPPLLLLDDVLAELDPQRQLALLEAVGDT-HQCLVSATHLDAFE 343


>gi|317968796|ref|ZP_07970186.1| recombination protein F [Synechococcus sp. CB0205]
          Length = 392

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 168/360 (46%), Gaps = 18/360 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           I++  L + +FRNY +L L  +A   + +G NG GK+N+LEA+  L   R  R +S  D+
Sbjct: 24  IRLHRLELRQFRNYGALSLTLEAPRLLVIGRNGEGKSNLLEAVELLGSLRSHRCSSDRDL 83

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G        A  +G +      ++LE R     +  + N  V+    EL   LR   
Sbjct: 84  IQQGERQGL-IAADCDGGD-----RLELELRRQGGRQ-ARRNGKVLERQHELIGPLRCVG 136

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  +  G    RR++LDR+V  ++P +   +  + RL+R R++LL  G+  +    
Sbjct: 137 FSALDLELVRGEPALRRQWLDRVVLQLEPVYAELLSRYGRLLRQRSQLLRRGFPQAQLEG 196

Query: 185 SIEA---QMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKLSLTGFLDGKFD 237
            ++A   QMA +G +++  R+  +  L  L   +  +         ++      L+G  +
Sbjct: 197 LLDAFDQQMALIGTRLHRRRLRALRRLEPLAQAWQHRLSDGRELLGLRYCPGSQLEG--E 254

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           ++    ++  A++L   R  +    +  +GPHR ++ ++   +     +GS G+Q+ +++
Sbjct: 255 EAEAPWRDALAEQLLLQRPQELRLGQCSVGPHRDEVAMELGGQPAR-RYGSAGQQRTLVL 313

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA   L+    G  P+LLLD++ A LD  ++  L   V   G Q  ++ T    F+ 
Sbjct: 314 ALKLAELELVHQLWGEPPLLLLDDVLAELDPGRQELLLEAVGQ-GHQCLVSATHLGAFNG 372


>gi|86606664|ref|YP_475427.1| recombination protein F [Synechococcus sp. JA-3-3Ab]
 gi|97181044|sp|Q2JQG8|RECF_SYNJA RecName: Full=DNA replication and repair protein recF
 gi|86555206|gb|ABD00164.1| DNA replication and repair protein RecF [Synechococcus sp.
           JA-3-3Ab]
          Length = 380

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 182/377 (48%), Gaps = 22/377 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++FL++  FRNY   ++ F+A  TI VG+N  GKTN+LEA+  L+  R  R     ++ +
Sbjct: 3   LRFLHLWHFRNYRDQKISFEAPKTILVGENAQGKTNLLEAVELLATLRSRRAGRDRELVQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+       A VE +    +++++L ++  RS+R   +N   +R   +     ++S +V
Sbjct: 63  QGAEK-ARIAATVERLGVAHELAMELRSQGGRSLR---VNGQGLRRQSDFLG--QVSAVV 116

Query: 127 -PSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             S+D  +  G    RR +LD ++  ++P +   +  + ++++ RN LL +    +    
Sbjct: 117 FSSLDLELVRGAPEARRTWLDGVLLQLEPAYLGLVEQYRQILKQRNALLKQDPLAAGDKV 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-----GFLDGK 235
              +  +AQ+A LG +I   R  ++  L  L   + Q  +     LSLT        D +
Sbjct: 177 PQMAFWDAQLATLGSRILRRRARLLQRLEPLAARWHQAISGGRETLSLTYRPQVPLPDPQ 236

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            D      + ++   +      +     +L+GPHR ++ +   D     A+GS G+Q+ +
Sbjct: 237 ADPKVV--QAQFLAAIRAKAAAEQALGTSLVGPHRDEVELG-IDGVAARAYGSQGQQRTL 293

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           ++ + LA   LI    G  P+LLLD++ A LD  ++N L   + +   Q  +T T    F
Sbjct: 294 VLALKLAELELIEQVKGDPPLLLLDDVLAELDLHRQNQLLEAIQER-VQTLVTTTHLGSF 352

Query: 356 DSLN-ETAKFMRISNHQ 371
           D+   + A+ +++   Q
Sbjct: 353 DAAWLQGAQILQVHQGQ 369


>gi|33151998|ref|NP_873351.1| recombination protein F [Haemophilus ducreyi 35000HP]
 gi|51316363|sp|Q7VMW3|RECF_HAEDU RecName: Full=DNA replication and repair protein recF
 gi|33148220|gb|AAP95740.1| DNA replication and repair protein RecF [Haemophilus ducreyi
           35000HP]
          Length = 360

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 147/353 (41%), Gaps = 20/353 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I+ FRN  ++ L         VG NG GKT++LEAI +L  GR F+      +    +
Sbjct: 6   LLINNFRNLQAIDLELSPDFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRIIHHHA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            +F    ++++  +    + ++     D     L+IN    + + +L   L +  + P  
Sbjct: 66  ENFV-LHSKIDETQHQWSVGLQKNRAGD---TLLKINGEDGKKIADLAHLLPMQVITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR FLD  +F           + +RL++ RN  L +     S   + + +
Sbjct: 122 LTLLNGGPSYRRAFLDWGLFHQHLEFYSYWANLKRLLKQRNAALPQ-VKSYSELKAWDIE 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT---GFLDGKFDQSFCALKEE 246
           +  L   +   R E   AL   I E   +   P + + ++   G+ +G           +
Sbjct: 181 LVRLAHLVTKMRTEYAEALRPEI-EKTCRFFLPELPIRVSFHQGWENGA----------D 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L  G + D     T++GP ++D         +     S G+ K+++  + LA    
Sbjct: 230 YADVLRQGFERDQNIGYTMVGPQKADFRFKANGLPVEDV-LSRGQLKLLMCALRLAQGEY 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
           +        + L+D+ ++ LD  KR  L   + + GSQ+F+T       + ++
Sbjct: 289 LVTQKKRQCLFLIDDFASELDPMKRELLAHRLRETGSQVFVTAITAEQLNQMH 341


>gi|298481402|ref|ZP_06999594.1| RecF protein [Bacteroides sp. D22]
 gi|295086818|emb|CBK68341.1| DNA replication and repair protein RecF [Bacteroides xylanisolvens
           XB1A]
 gi|298272266|gb|EFI13835.1| RecF protein [Bacteroides sp. D22]
          Length = 372

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 159/365 (43%), Gaps = 36/365 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS    F ++S   +  
Sbjct: 3   LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58

Query: 67  IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                   FF      E  +G  + I   ++ R  +  +  +      R  D +   L +
Sbjct: 59  QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
             + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +  
Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFPVEEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  M++ G  +   R        + I E++       I  S   F+    D+   
Sbjct: 176 LFLVWEEMMSQAGEIVFRKR-------EAFIREFIP------IFQSFYSFISQ--DKEAV 220

Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            L  E +A+       L   R+ D +   +L G H+ +L +   +  I    GS G+ K 
Sbjct: 221 GLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 279

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS 353
            LV + LA    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++ 
Sbjct: 280 YLVALKLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVGGDNFGQIFITDTNRG 339

Query: 354 VFDSL 358
             D +
Sbjct: 340 HLDRI 344


>gi|289207190|ref|YP_003459256.1| DNA replication and repair protein RecF [Thioalkalivibrio sp.
           K90mix]
 gi|288942821|gb|ADC70520.1| DNA replication and repair protein RecF [Thioalkalivibrio sp.
           K90mix]
          Length = 357

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 128/327 (39%), Gaps = 22/327 (6%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF--STFARVEGMEGLADIS 89
            VG NG GKT++LEA   L+ GR FR      V R G    +       + G E    +S
Sbjct: 27  LVGPNGAGKTSVLEACHVLAAGRSFRTPQLRRVVRSGEKGLWIGGRVRDLHGGEHRLGVS 86

Query: 90  IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149
            +   R     R ++ +  V   +     H        S D + +G   ERRR LD   F
Sbjct: 87  WEGTRRSRLDGRWMEGHASVAEWLPVRVLH------AGSFD-LLTGSPEERRRLLDWGCF 139

Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209
                +R     + R    RN  L +G  D       E  + + G  I  AR   I+   
Sbjct: 140 HSVRGYRWHWQQWRRSHEQRNAALRKG--DRRAAREFERPLVDAGENITQARQAYIDRWE 197

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL--IG 267
               E  +   F          L   +D+   +L E  A      R  DS   R    +G
Sbjct: 198 INTSEAARVFGFSQRLGDFQVHLRVGWDRDR-SLSEAIA------RSRDSDEERGFGQVG 250

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           P R+D+ + +  +    A  S GEQK ++  +    AR++    G AP++LLD++ + LD
Sbjct: 251 PQRADIDLRFDGR--VAAEASRGEQKRLITALTGGQARMLEREAGRAPVVLLDDVVSELD 308

Query: 328 EDKRNALFRIVTDIGSQIFMTGTDKSV 354
                 L   + + G Q+ +T  +  +
Sbjct: 309 VAAVEGLMCGLLEFGWQVLVTTVEPHI 335


>gi|42525748|ref|NP_970846.1| DNA replication and repair protein RecF [Treponema denticola ATCC
           35405]
 gi|41815759|gb|AAS10727.1| DNA replication and repair protein RecF [Treponema denticola ATCC
           35405]
          Length = 360

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 149/345 (43%), Gaps = 36/345 (10%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF- 73
           FRN  +  +   +     VG NG GKTN LEA+   S G  FR  S A +       F  
Sbjct: 11  FRNLENATVDISSPEVFLVGKNGQGKTNFLEALYVSSYGTSFRTRSLAQICTKDEKEFSI 70

Query: 74  -STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
            + +   + +     I I+ + +D      +Q N   I+   EL     IS  +P +  +
Sbjct: 71  RALYKESDNISHTISIIIQDKKKD------IQKNFKKIKNSKEL-----IST-IPCI--L 116

Query: 133 FSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           F G  +E        +R F+D+ V   +      ++ + + ++ RN +L +    +S   
Sbjct: 117 FHGDDIEFAVGTPSRKRFFIDQSVSLCNSDFIEVLVKYSKALKSRNVILEQK--KASLLD 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           SI+   A L + I        N   +++ EY +  +  + ++S    ++  +  S     
Sbjct: 175 SIDEIFASLALLIT-------NERKNIVEEYAKHFSLIYEEISGVSGVEMVYRPSVKVES 227

Query: 245 EEYAKKLF-DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           EE    L  + R+ D + R +  GPHR D I    DK       S G+++++ + + +  
Sbjct: 228 EEDLLILLAEKRQNDLIDRTSSTGPHR-DRIHFIKDKKPFTERASNGQRRLISLVLRMIQ 286

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           A++ S  TG  PI L+D+I   LD +KR     ++     Q+F T
Sbjct: 287 AKIYSEKTGRKPIFLMDDILLELDPEKRQKFMELLPPY-EQLFCT 330


>gi|295394844|ref|ZP_06805057.1| recombination protein F [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972177|gb|EFG48039.1| recombination protein F [Brevibacterium mcbrellneri ATCC 49030]
          Length = 372

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 160/372 (43%), Gaps = 26/372 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  FR+Y S  +  +   + FV  NG GKTN++EA++++S  +  R +    + R
Sbjct: 3   VSQLRLRNFRSYESFDVALEKGVSTFVAPNGWGKTNLVEALAYVSHLKSHRVSQDLPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G            G   LA + + +  +   S R +Q   V  R   EL   L      
Sbjct: 63  SGCDEATVAVLAHRGDRQLA-LEVTVRAKGANSAR-IQRQSVRPR---ELVGLLPCVVFA 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    +  G   +RR FLD ++    PR      D +R ++ RN LL E    ++    +
Sbjct: 118 PEDLGLVKGEPAQRRDFLDDLLVTQSPRFVAVRADSDRALKQRNALLKE--LKNNRDPGL 175

Query: 187 EAQM-------AELGVKINIARVEMINALSSLIME--YVQKENFPHIKLSLTGFLDGKFD 237
           EA +       AE   ++ + R++++  L+  +        ++    + S+T     + D
Sbjct: 176 EATLAIWDEAFAEAASQLVVGRMDLVKRLTQPLQNDFATLAQDANEDRKSVTATYTSRID 235

Query: 238 QSFCALKEEYAKKL---FDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAH-GSTGEQ 292
            S      +    +    + R++  + R  TL+GP R DL ++     ++  H  S GE 
Sbjct: 236 YSDIRNTTDAKNAIIQALESRRVPEIDRGLTLVGPQRDDLELEIG--GVSAKHYASHGES 293

Query: 293 KVVLVGIFLAHARLIS-NTTGF--APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
             V + + LA   ++  + +G   + +L+LD++ A LDE +RN L  ++      +    
Sbjct: 294 WSVALALKLAGWHVLQEDNSGPDDSAVLVLDDVFAELDEGRRNRLAGMLEPAQQVLITAA 353

Query: 350 TDKSVFDSLNET 361
               V +SL+ T
Sbjct: 354 VPGDVPESLHST 365


>gi|304382224|ref|ZP_07364731.1| recombination protein F [Prevotella marshii DSM 16973]
 gi|304336581|gb|EFM02810.1| recombination protein F [Prevotella marshii DSM 16973]
          Length = 371

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 150/358 (41%), Gaps = 15/358 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           ++I  F+N     L    +   F+GDNG GKTN L+A+ +LS  R       + +     
Sbjct: 6   ISIINFKNIREAVLELSPKMNCFIGDNGEGKTNFLDAVYYLSFCRSASNPIDSQII-CHE 64

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             FF    R +  EG  ++S+    +   + +  + N    + + E    + +  + PS 
Sbjct: 65  QDFFMLEGRYQTDEG-EEVSVACSMKRG-TKKHFKRNRKEYKRLSEHIGFIPLIQVSPSD 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWCSSIEA 188
             +  G S ERRR +D ++   D  +   +  + + ++ RN LL  +   D +     E 
Sbjct: 123 ITLIEGSSEERRRLMDIVISQYDRTYLETLTRYNKALQQRNTLLKMDDEPDETLLDIWET 182

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           +MA+ G  I   R   +  L      + Q+ +    ++SL      +  +    ++ + A
Sbjct: 183 EMADAGELIFRRRDAFVQELMPTFQNFYQRISGDQEQVSLHYISHCQRGRLLDVIRRDRA 242

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           K        D     +L G HR DL +      +    GS G+ K  ++ + LA    + 
Sbjct: 243 K--------DRAVGHSLHGIHRDDLEMMLGGYPMK-REGSQGQNKTFIISLKLAQFDFLR 293

Query: 309 NT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETAKF 364
            T  G  P+LLLD+I   LD  +   +  +V  +   QIF+T T++   D +     F
Sbjct: 294 RTGNGTTPLLLLDDIFDKLDARRVEQIVHLVAGNHFGQIFITDTNRDHLDRILHNGDF 351


>gi|256831258|ref|YP_003159985.1| DNA replication and repair protein RecF [Jonesia denitrificans DSM
           20603]
 gi|256684789|gb|ACV07682.1| DNA replication and repair protein RecF [Jonesia denitrificans DSM
           20603]
          Length = 415

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 159/396 (40%), Gaps = 59/396 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++ ++R+Y  + + F     + VG NG GKTNI+EAI +L+     R A    + R
Sbjct: 3   VSHLSLVDYRSYEHVDIEFAPGVNVLVGHNGQGKTNIVEAIGYLATLASHRVAHDTALIR 62

Query: 67  IGSPSFF----------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           +G+              +    +E + G A+ +     +  R+   L I   V+   ++L
Sbjct: 63  VGAQRALIRSRVVRGDRAQVVELELLHGKANKARVNRGQPGRASTVLGIVKTVVFAPEDL 122

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE- 175
                          +  G    RRR+LD +   + PR R  + D+++++R R+ LL + 
Sbjct: 123 V--------------LVKGDPDARRRYLDDLTVLMIPRMRSVLADYDKVVRQRSALLKQL 168

Query: 176 -----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM---EYV---QKENFPHI 224
                 +   +  +  + +M  LG +I   R  ++ AL+  +    E V   Q E     
Sbjct: 169 MRGGASHASDATLAVWDERMVALGSQIIGVRQRLVAALAPHLASGYETVSSGQSEAKMRY 228

Query: 225 KLSLTGFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           + SL  FLD       S   +   YA+ L   R+ +      ++GPHR D +    +   
Sbjct: 229 RPSLESFLDEPMPAVMSVEEISVIYAEVLARARRRELERGVCIVGPHRDD-VEQTLNNLP 287

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLIS-----NTTGFA---------------PILLLDEI 322
              + S GE     + + LA  RL++     N    A               PIL+LD++
Sbjct: 288 VKGYASHGESWSYALAMRLASYRLMTEGPDENDPASADLQDMWWTDSQEDTEPILILDDV 347

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
            A LD  +R  L  I       I      + V D L
Sbjct: 348 FAELDVRRRRQLADIAAQARQVIITAAVAQDVPDQL 383


>gi|256370827|ref|YP_003108651.1| DNA replication and repair protein RecF [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256007411|gb|ACU52978.1| DNA replication and repair protein RecF [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 346

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 140/323 (43%), Gaps = 26/323 (8%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
            VG NG GKT++LE++S +  GR FR    + + R+G        A VE    LA   ++
Sbjct: 26  VVGSNGHGKTSLLESVSVVLAGRSFRTHDRSALVRVGHDEAV-VVADVE--RELAP-PVR 81

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           +  R DR  R   +   V    ++    L +    P   +I SG   +RRRFLD  V  +
Sbjct: 82  VGRRVDREGR---LETRVDGQREQRGPSLPVVSFHPDDVQIASGGPEQRRRFLDECVVGL 138

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
           D     R+   ER++R R   L     D    S +E ++A   V++   R      ++  
Sbjct: 139 DRGAAIRLRQAERVLRQRTEALRAPVLDEVTLSILEERLARASVEVAELRARAAEVIA-- 196

Query: 212 IMEYVQKENFPHIKLSLTGFL--DGKFDQSFCALKEEYA--KKLFDGRKMDSMSRRTLIG 267
                     PH +  +   L   G+   ++    +E    ++L   R  D     T +G
Sbjct: 197 ----------PHARAVIDEMLMSAGRVVVTYRGAGDEATLLEQLRARRGDDRRRGVTSVG 246

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
            HR D+ +   D       GS G+ + V+V + +A AR +   T   P+L+LD++ A LD
Sbjct: 247 FHRDDVEI-LLDGEPIRRMGSQGQVRTVVVALKVALARAMEAVTKEPPVLVLDDLLAELD 305

Query: 328 EDKRNALFRIVTDIGSQIFMTGT 350
            ++      ++   G Q F++ T
Sbjct: 306 AERARRAVAMME--GMQAFISHT 326


>gi|317123181|ref|YP_004097293.1| DNA replication and repair protein RecF [Intrasporangium calvum DSM
           43043]
 gi|315587269|gb|ADU46566.1| DNA replication and repair protein RecF [Intrasporangium calvum DSM
           43043]
          Length = 424

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 4/169 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y    + F    T  +G NG GKTN++EAI +L+     R A+   +
Sbjct: 1   MHVRHLTLKDFRSYPGAEIAFSPGVTTLIGLNGQGKTNLVEAIGYLATLGSHRVAADQPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+        R   M G  +  I+LE    R+ R       V R  D L   LR   
Sbjct: 61  VRFGA---SQAIVRGAVMSGGHETMIELEITPGRANRARLGRAPVSRPRDVLGT-LRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
             P    +  G   ERRRFLD ++    PR      D++++++ RN LL
Sbjct: 117 FAPEDLALVKGDPSERRRFLDDLLVQRQPRWAGVRADYDKIVKQRNALL 165



 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
           L+GPHR D+++   +      + S GE     +G+ LA  RL++   G  P+L+LD++ A
Sbjct: 299 LVGPHRDDVVLTLGNLPAK-GYASHGESWSFALGLKLAAYRLLARDLGDDPVLVLDDVFA 357

Query: 325 HLDEDKRNALFRIVTDIGSQIFMT 348
            LD  +R  L  ++ D   Q+ +T
Sbjct: 358 ELDSGRRERLAELIGDC-EQVIIT 380


>gi|154508242|ref|ZP_02043884.1| hypothetical protein ACTODO_00736 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797876|gb|EDN80296.1| hypothetical protein ACTODO_00736 [Actinomyces odontolyticus ATCC
           17982]
          Length = 398

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 161/400 (40%), Gaps = 37/400 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FR++    +      T+ VG NG GKTN++EA+++LS     R  +   +
Sbjct: 1   MRVSHLALDDFRSWKHGVVELPEGPTVLVGANGQGKTNLVEALAYLSTFSSHRVGAEGAL 60

Query: 65  TRI------GSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            RI       +P      ARV   G E +    I+LE    ++ R  +IN   ++   E+
Sbjct: 61  VRIPIDEAEAAPGGAVIRARVVTFGREQV----IELEIVRGKANRA-RINRAQVK-PREI 114

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              +R     P    +  G    RR FLD +   + P H     DF+R+ R R  L+   
Sbjct: 115 LGIVRTVVFAPEDLSLVRGDPSVRRSFLDDLATQLSPIHASVRSDFDRVARQRAALMKAA 174

Query: 177 YF-----DSSWCSSIE---AQMAELGVKINIARVEMINALSSLIM-EYVQKENFP-HIKL 226
                   S   S++E    Q A L  +I   R  +++ L       Y    + P H+ L
Sbjct: 175 QASLRRGQSPDLSTLEIWDQQFAALSARITATRASIVSRLEEPAARSYDDVADSPRHLHL 234

Query: 227 SLTGFLD---GKFDQSFC--------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
           +    +D   G    +          A  E     L   R+ ++     L G HR DL +
Sbjct: 235 AFDASVDRVIGTDPDNPASADLTDVDAQTERMLAALASVREKETERGVNLAGAHRDDLAL 294

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                 +   + S GE   V + + L    L+S+  G  PIL+LD++ A LD  +R  L 
Sbjct: 295 SLGAMPVK-GYASHGESWSVALALRLGAFELLSD-DGDTPILILDDVFAELDSSRREGLA 352

Query: 336 RIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
            + +     I        +  SL+  A  +R+   +   I
Sbjct: 353 ALASKAEQIIVTCAVAGDLPASLDHHALHVRLDPERGTVI 392


>gi|313159177|gb|EFR58550.1| DNA replication and repair protein RecF [Alistipes sp. HGB5]
          Length = 448

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 151/352 (42%), Gaps = 33/352 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI  LN   F+N     L         VGDNG GKTN+++A+ +LS  +     +     
Sbjct: 5   KISLLN---FKNIEQAELALCRGVNCLVGDNGAGKTNVIDAVYYLSMCKSSLPMTDGQSI 61

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           R G+  F +    +       +I      +  +    L+ N    +  + L+ H+ +   
Sbjct: 62  RHGADFFLAEGQYLTDGGKSENIVCSFSRKGGK---VLKRNG---KEYERLSDHVGLVPA 115

Query: 126 V---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           V   P+   + S  S ERRR+L+  +  +D  +   ++ +  ++  RNRLL +   D + 
Sbjct: 116 VIVSPADSALISDASDERRRYLNAFISQLDRSYLTAVMRYNAVLAERNRLL-KNMPDETM 174

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+ E G +I+  R E    L  +  EY +              L G  +Q    
Sbjct: 175 LQIYDMQLVEQGERIHARRREFAERLQPVAAEYYR-------------ILSGDREQVELH 221

Query: 243 LKEE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            K E     + + L   R+ D  +  T  G HR DL++      +   +GS G+QK  L+
Sbjct: 222 YKSELNDRPFGEILLAARQKDLANEFTTSGIHRDDLVLRIGGYPLR-KYGSQGQQKSFLI 280

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMT 348
            + LA   +++   G  PILLLD++   LD  +   L R+V+ D   QI +T
Sbjct: 281 ALKLAQYTIVAQEKGEKPILLLDDLFDKLDAGRVEQLIRLVSEDSFGQIVIT 332


>gi|294647035|ref|ZP_06724648.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CC
           2a]
 gi|294809889|ref|ZP_06768565.1| DNA replication and repair protein RecF [Bacteroides xylanisolvens
           SD CC 1b]
 gi|292637612|gb|EFF56017.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CC
           2a]
 gi|294442918|gb|EFG11709.1| DNA replication and repair protein RecF [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 375

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 159/365 (43%), Gaps = 36/365 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS    F ++S   +  
Sbjct: 6   LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSSGNPIDS 61

Query: 67  IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                   FF      E  +G  + I   ++ R  +  +  +      R  D +   L +
Sbjct: 62  QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 118

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
             + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +  
Sbjct: 119 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALVQRNTLLKSEFPVEEE 178

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  M++ G  +   R        + I E++       I  S   F+    D+   
Sbjct: 179 LFLVWEEMMSQAGEIVFRKR-------EAFIREFIP------IFQSFYSFISQ--DKEAV 223

Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            L  E +A+       L   R+ D +   +L G H+ +L +   +  I    GS G+ K 
Sbjct: 224 GLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 282

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS 353
            LV + LA    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++ 
Sbjct: 283 YLVALKLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVGGDNFGQIFITDTNRG 342

Query: 354 VFDSL 358
             D +
Sbjct: 343 HLDRI 347


>gi|237715558|ref|ZP_04546039.1| DNA replication and repair protein RecF [Bacteroides sp. D1]
 gi|262408567|ref|ZP_06085113.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229444267|gb|EEO50058.1| DNA replication and repair protein RecF [Bacteroides sp. D1]
 gi|262353432|gb|EEZ02526.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 372

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 159/365 (43%), Gaps = 36/365 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS    F ++S   +  
Sbjct: 3   LKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLS----FCKSSGNPIDS 58

Query: 67  IG---SPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                   FF      E  +G  + I   ++ R  +  +  +      R  D +   L +
Sbjct: 59  QNIRHEQDFFVIQGFYEAEDGTPEEIYCGMKRRSKKQFK--RNKKEYSRFSDHIG-FLPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSS 181
             + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL +E   +  
Sbjct: 116 VMVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALVQRNTLLKSEFPVEEE 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  M++ G  +   R        + I E++       I  S   F+    D+   
Sbjct: 176 LFLVWEEMMSQAGEIVFRKR-------EAFIREFIP------IFQSFYSFISQ--DKEAV 220

Query: 242 ALK-EEYAKK------LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            L  E +A+       L   R+ D +   +L G H+ +L +   +  I    GS G+ K 
Sbjct: 221 GLSYESHARDASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKT 279

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS 353
            LV + LA    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++ 
Sbjct: 280 YLVALKLAQFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVGGDNFGQIFITDTNRG 339

Query: 354 VFDSL 358
             D +
Sbjct: 340 HLDRI 344


>gi|218295958|ref|ZP_03496738.1| DNA replication and repair protein RecF [Thermus aquaticus Y51MC23]
 gi|218243696|gb|EED10224.1| DNA replication and repair protein RecF [Thermus aquaticus Y51MC23]
          Length = 343

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 132/302 (43%), Gaps = 33/302 (10%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS-- 89
            VG N  GKT +L AI  L+ G G  R +  D+ R G    +   A VE   G+  +   
Sbjct: 28  LVGGNAQGKTGLLLAIH-LALG-GEVRGTLEDLIRFGEKEAWLQ-AEVETELGVFRVEQR 84

Query: 90  IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149
           I LE R+ R    L    V +R + EL   + I   +P    +  G   ERR FLD ++ 
Sbjct: 85  IGLEGREIR----LNERPVGLRALYELPGSVLI---LPEDVEVVLGPKEERRGFLDHLLA 137

Query: 150 AIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
               R+   +  +E+ +R RN LL T G   S W    + ++A  G +I + R   +   
Sbjct: 138 RFSRRYAALLSAYEKALRQRNALLKTGGNSLSVW----DQELARYGEEITLLRRRFLKRF 193

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
             L     Q      + L L         Q+  A +EE           + +  +TL+GP
Sbjct: 194 LPLFQSVHQTLAPGEVGLRLEETAPEGLLQALAARREE-----------ERLRGQTLVGP 242

Query: 269 HRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
           HR DL+     +    AH   S GE K + + + LA  RL+S   G  P+LL+DE S  L
Sbjct: 243 HRDDLVFLLGGRP---AHRFASRGEAKALALALRLAEHRLLSEHHGEPPLLLVDEWSEEL 299

Query: 327 DE 328
           DE
Sbjct: 300 DE 301


>gi|325475139|gb|EGC78324.1| DNA replication and repair protein RecF [Treponema denticola F0402]
          Length = 360

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 149/345 (43%), Gaps = 36/345 (10%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF- 73
           FRN  +  +   +     VG NG GKTN LEA+   S G  FR  S A +       F  
Sbjct: 11  FRNLENATVDISSPEVFLVGKNGQGKTNFLEALYVSSYGTSFRTRSLAQICTKDEKEFSI 70

Query: 74  -STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
            + +   + +     I I+ + +D      +Q N   I+   EL     IS  +P +  +
Sbjct: 71  RALYKESDNISHTISIIIQDKKKD------IQKNFKKIKNSKEL-----IST-IPCI--L 116

Query: 133 FSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           F G  +E        +R F+D+ V   +      ++ + + ++ RN +L +    +S   
Sbjct: 117 FHGDDIEFAVGTPSRKRFFIDQSVSLCNSDFIEALVKYSKALKSRNVILEQK--KASLLD 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           SI+   + L + I        N   +++ EY +  +  + ++S    ++  +  S     
Sbjct: 175 SIDEIFSSLALLIT-------NERKNIVEEYAKHFSLIYEEISGVSGVEMVYRPSIKVES 227

Query: 245 EEYAKKLF-DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           EE    L  + R+ D + R +  GPHR D I    DK       S G+++++ + + +  
Sbjct: 228 EEDLLILLAEKRQNDLIDRTSSTGPHR-DRIHFIKDKKPFTERASNGQRRLISLVLRMIQ 286

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           A++ S  TG  PI L+D+I   LD +KR     ++     Q+F T
Sbjct: 287 AKIYSEKTGRKPIFLMDDILLELDPEKRQKFMELLPPY-EQLFCT 330


>gi|320095110|ref|ZP_08026819.1| recombination protein F [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977977|gb|EFW09611.1| recombination protein F [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 395

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 159/387 (41%), Gaps = 42/387 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FR++    + F    T+ VG NG GKTN++EAI++LS     R  + + +
Sbjct: 1   MRVSHLALDDFRSWKRGLVEFPPGATVLVGANGQGKTNLVEAIAYLSTFSSHRVGAESAL 60

Query: 65  TRIG------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            RI       +P       R+   EG   + ++LE    ++ R  +IN   +R    L  
Sbjct: 61  VRIPADPASTAPGGAVIRVRLVQAEGREQV-VELEIVRGKANRA-RINRTQVRPRAILGL 118

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            +R     P    +  G    RR F+D +V    P       DFER+ R R  L+     
Sbjct: 119 -VRTVVFAPEDLALVRGEPAARRAFMDDLVIQRSPVMAGVKADFERVARQRAALMKSAQA 177

Query: 179 DSSWCSSI--------EAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLT 229
            +   +S         + Q A L  +++ AR + + +L+      Y +  + P  +L L+
Sbjct: 178 SARRGASPDLSTLDVWDQQFAHLSARLSAARAQAVTSLAGPASRAYDEVSDSPR-RLVLS 236

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT-----------------LIGPHRSD 272
              +   D++     ++ A    D     +  RRT                 L+G HR +
Sbjct: 237 --FEASVDRAIGTDPDDPASA--DPCDAPAQERRTLAALAAHRDKEVTRGVNLVGAHRDE 292

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           L +      +   + S GE   V + + L    L+S   G  P+L+LD++ A LD  +R 
Sbjct: 293 LSLVLGGMPVK-GYASHGESWSVALALRLGAFELLSE-DGDTPVLILDDVFAELDTARRE 350

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L  + +     I     ++ +   L+
Sbjct: 351 GLAAMASRAEQAIITCAVEEDIPAGLD 377


>gi|212715153|ref|ZP_03323281.1| hypothetical protein BIFCAT_00039 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661834|gb|EEB22409.1| hypothetical protein BIFCAT_00039 [Bifidobacterium catenulatum DSM
           16992]
          Length = 400

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 143/357 (40%), Gaps = 49/357 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  +R++    L F+    I  G NG+GKTNI+EA+  LS G   R +S   +  
Sbjct: 3   ISRLALDHYRSWEHCVLDFEPGINILQGANGLGKTNIVEAVEVLSTGSSHRTSSSLPLIE 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  S  +  A VE  E        +  R     R        +R  D + +   +S+  
Sbjct: 63  KGCTS-ATIRANVEDDETQHTYEATIVARGANRARIDGGKSQYMR--DLIGRTPSVSF-T 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------GY 177
           P   R+ +G    RR F+++    + P + + +  F  + + R  LL +          Y
Sbjct: 119 PEDQRLVAGDPATRRNFINQAASLLLPHYAQLLQQFTHVAKQRTALLKQLGDGTNLDPQY 178

Query: 178 FDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
              +  S +E    Q  +LG+++   R ++I  L          E F  I  SL G    
Sbjct: 179 SQQTVLSGLEIWTGQFIDLGMRLTRERNDVIARLG---------EPFARIYASLAG---- 225

Query: 235 KFDQSFCALKEEYA---KKLFDGRKMDSMSR-------------RTLIGPHRSDLIVDYC 278
             D    AL  E +     LFD    + +SR             + LIGPHR DL +   
Sbjct: 226 --DDERAALSYEPSFDEVMLFDDPSAE-ISRHFQRIYPGEVARGQNLIGPHRDDLTLLLN 282

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
           D        S GE   + + + +A    +S      PI++LD++ A LDE +R  + 
Sbjct: 283 DMPAR-EFASNGEMWTMALALKMALYEAVSAQFESKPIVILDDVFAQLDESRRGQIL 338


>gi|46911667|emb|CAG18465.1| Putative RecF [Photobacterium profundum SS9]
          Length = 320

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 149/329 (45%), Gaps = 18/329 (5%)

Query: 44  LEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
           +EAI +L  GR FR    + V R      F    RV     L ++ + +  + D +   +
Sbjct: 1   MEAIHYLGHGRSFRSHLTSRVIRHEQQELF-IHGRVLTNNQL-ELPLGINKKRDGTTE-V 57

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           +++    + + +L + L +  + P    +  G    RR F+D  VF I+P+        +
Sbjct: 58  KVSGESGQKLSQLAQVLPLQLITPEGFELLIGGPKYRRSFIDWGVFHIEPKFYNAWSRIK 117

Query: 164 RLMRGRNRLL--TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           RL + RN LL     Y + S+    + ++A L  +I++ R E + A+     E  Q    
Sbjct: 118 RLTKQRNALLKTARSYRELSYW---DQELAVLAEEISVWRDEYLIAVKQKAAEICQG-FL 173

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           P  ++ L+ +   + +  +  L     K+ F+    D     T+ GPH++DL +      
Sbjct: 174 PEYEIQLSYYRGWEKETPYAEL----LKRNFE---RDCQLGYTVNGPHKADLRMKVSGTP 226

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
           +     S G+ K+++  + LA    ++  TG   I L+D+ ++ LD  +R  L + + + 
Sbjct: 227 VEDVL-SRGQLKLMVCALRLAQGLHLTEATGKQCIYLIDDFASELDSHRRALLAQRLKET 285

Query: 342 GSQIFMTG-TDKSVFDSLNETAKFMRISN 369
            +Q+F++  +++ + D  +E  K   + +
Sbjct: 286 NAQVFISAISNEQIADMHDENGKMFHVEH 314


>gi|109896335|ref|YP_659590.1| DNA replication and repair protein RecF [Pseudoalteromonas
           atlantica T6c]
 gi|123361468|sp|Q15ZZ5|RECF_PSEA6 RecName: Full=DNA replication and repair protein recF
 gi|109698616|gb|ABG38536.1| DNA replication and repair protein RecF [Pseudoalteromonas
           atlantica T6c]
          Length = 363

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 151/362 (41%), Gaps = 46/362 (12%)

Query: 10  LNISEFRNYASLRLV-FDAQHTI--FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           L+  + RN  +L+ V F   H +   +G NG GK++ILEAI +L  GR FR + + +V +
Sbjct: 3   LDSVQIRNLRNLQHVTFKPSHGVNFILGINGSGKSSILEAIHYLGFGRSFRTSKHKNVIQ 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S F+ F           + +     D  SV    IN +    V +L   L +    
Sbjct: 63  NEQES-FTVFCECLEDSTTQRLGLSRSINDTVSV---SINGIKGNKVSDLVSLLPVQIFT 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS-- 181
           P    I  G    RR+++D  +F ++         + RL++  N L  +   GY +    
Sbjct: 119 PQSSDILLGAPKLRRKYIDWCLFHVEHSFLTCSNAYSRLLKHNNALCRKQQVGYANPQRV 178

Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            W   +    +EL         E  NA+ + ++        P I  +L  FL       F
Sbjct: 179 YWTDLLAQYGSEL--------TEFRNAMMTRLI--------PLITSNLAQFLP-----EF 217

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTL----------IGPHRSDLIVDYCDKAITIAHGSTG 290
           C ++  Y +    G +++    ++           +GPH++D+      K       S G
Sbjct: 218 C-VEISYYRGWEKGLELNEALTKSADRDYKNGYISVGPHKADVRFKISGKPAQEVL-SRG 275

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + ++++  + LA  + + + T    I LLD++ A LD  KR      + +  +Q+F+T  
Sbjct: 276 QLRMLVAALQLATTQCLMSYTQKTCIFLLDDVGAELDAAKREVFIDRLLESNTQLFVTAI 335

Query: 351 DK 352
           ++
Sbjct: 336 EE 337


>gi|169830222|ref|YP_001716204.1| DNA replication and repair protein RecF [Candidatus Desulforudis
           audaxviator MP104C]
 gi|226737788|sp|B1I1H6|RECF_DESAP RecName: Full=DNA replication and repair protein recF
 gi|169637066|gb|ACA58572.1| DNA replication and repair protein RecF [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 360

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 146/358 (40%), Gaps = 17/358 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  +    FRN+  L +   A   I  G N  GKTN +EA+ F   G  FR     ++
Sbjct: 1   MRLTRIKAGNFRNFQHLDVQPAAGLNIVRGRNAQGKTNFIEAVFFALRGHSFRSLRDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  S F   A +EG +G   +  +L     + V      + V +   EL   L    
Sbjct: 61  VTWGQESAFVE-AELEGKDGRTRVRAELNPAGKKIVWA---GEPVGKA--ELAVRLGTVL 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSW 182
             P    +  G   ERRRFLD  +    P +   +  + R +  RN LL    G   S  
Sbjct: 115 FTPDDLSLIKGGPRERRRFLDLELGIFVPGYLTALQLYRRALEQRNHLLRMGGGRRYSEL 174

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                 ++ + G+ +   R+E++   + L   +      E       S  G  +G     
Sbjct: 175 LDLWTDEVCKYGMMLLSGRLEILKEFAPLACRLFGAWAGEELAVRYRSSVGLSNGVRTPG 234

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L+E  A      R+ +  + +T  GPH  DL      K       S G+Q+ V++ +
Sbjct: 235 AGDLRETLAAV----RQDEIRAGQTQAGPHLDDLAFMVNGKE-GRPFASQGQQRSVVLAL 289

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            LA   L    TG AP++LLD++    D ++R+ +   + +   Q+F+T  ++ +  S
Sbjct: 290 KLAQVFLWKRHTGEAPVVLLDDLLFEFDRERRDKVLETLQN-DVQVFITTGERVLSGS 346


>gi|225352382|ref|ZP_03743405.1| hypothetical protein BIFPSEUDO_03999 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156889|gb|EEG70258.1| hypothetical protein BIFPSEUDO_03999 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 419

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 145/354 (40%), Gaps = 43/354 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  +R++    L F     I  G NG+GKTNI+EAI  LS G   R +S   +  
Sbjct: 3   ISRLALDHYRSWEHCVLDFKPGINILQGANGLGKTNIVEAIEVLSTGSSHRASSSLPLIE 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  S  +  A VE  E        +  R     R        +R  D + +   +S+  
Sbjct: 63  KGCTS-ATIRANVEDGETQHTYEATIVARGANRARIDGGKSQYMR--DLIGRTPSVSF-T 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---------GY 177
           P   R+ +G    RR F+++    + P + + +  F  + + R  LL +          Y
Sbjct: 119 PEDQRLVAGDPATRRNFINQAASLLLPHYAQTLQQFTHVAKQRTALLKQLGDGTNLDPQY 178

Query: 178 FDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---- 230
              +  S +E    Q  +LG+++   R  +I+ L         +E F  I  SL G    
Sbjct: 179 GQQAVLSGLEIWTGQFIDLGMQLTRDRNNVISRL---------EEPFARIYASLAGDDER 229

Query: 231 ---FLDGKFDQSF-----CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KA 281
                +  FD+        A    + ++++ G   +    + LIGPHR DL +   D  A
Sbjct: 230 AALAYEPSFDEVMLFDDPAAEISRHFQRIYPG---EVARGQNLIGPHRDDLTLLLNDMNA 286

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
              A  S GE   + + + +A    +S      PI++LD++ A LDE +R  + 
Sbjct: 287 REFA--SNGEMWTMALALKMALYEAVSAHFESKPIVILDDVFAQLDEARRGQIL 338


>gi|183602670|ref|ZP_02964034.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219682502|ref|YP_002468885.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190069|ref|YP_002967463.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241195475|ref|YP_002969030.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183218088|gb|EDT88735.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620152|gb|ACL28309.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248461|gb|ACS45401.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250029|gb|ACS46968.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289177772|gb|ADC85018.1| RecF [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793056|gb|ADG32591.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 475

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 145/372 (38%), Gaps = 59/372 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           I +  L +  FR++ +  L F     I  G NG+GKTNI+EA+  LS G   R ++   +
Sbjct: 2   ITVSRLALDHFRSWTNCVLDFKPGVNILEGPNGLGKTNIVEALEVLSTGSSHRASTSQPL 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-------------------RCLQI 105
              G P+  +  A +E +    D     ET DDR+                      L +
Sbjct: 62  VEQGFPA-AAIRANIEELS--EDFENNTETIDDRTTTFELTIRVRGANRARVDGGPSLYM 118

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            D+V RV         +    P   R+  G    RR F+D+    +   +   +  F  +
Sbjct: 119 RDIVGRVP--------LVAFTPDDQRLVWGDPAVRRSFIDQAASVLVRGYTDLLQRFTHI 170

Query: 166 MRGRNRLL-----TEGYFDSSWCSSIE--------AQMAELGVKINIARVEMINALSSLI 212
            + R  LL      EG   S     +         AQ  E G+++   R+ +I  L+   
Sbjct: 171 AKQRAALLKQIGAQEGVSVSEEARQMRMNGLEVWTAQFIETGLELTRQRMAVIGMLNEYF 230

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR--------- 263
              VQ+     +  + T   +  FD+ +     E  ++    R   ++S           
Sbjct: 231 GTIVQE--LSDVDQTATLVYEPSFDELYLTQGAEAGEQGGPERVKAAISEHFQRIYTGEV 288

Query: 264 ----TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
                LIGP R D+ ++  +      + S GE   + + + +A  RL+    G  PI++L
Sbjct: 289 ARGVNLIGPQRDDVSIE-LNGMPAREYSSNGESWTLALALKMALYRLLERKAGERPIVVL 347

Query: 320 DEISAHLDEDKR 331
           D++ A LD  +R
Sbjct: 348 DDVFAQLDPSRR 359


>gi|145630087|ref|ZP_01785869.1| recombination protein F [Haemophilus influenzae R3021]
 gi|144984368|gb|EDJ91791.1| recombination protein F [Haemophilus influenzae R3021]
          Length = 299

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 119/269 (44%), Gaps = 13/269 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   + +  V+   IN      + +L   L +  
Sbjct: 61  ISYDEPH-FTLFGQIQESQHQWSVGLQKLRQGNTLVK---INGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   ALS  I +  Q    P ++++++      F Q +    
Sbjct: 176 IWDVELAKLAHQVSEWRAEYAEALSPEIEQTCQL-FLPELEINVS------FHQGW-EKN 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
            +Y + L    + D     T  GP ++D 
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADF 256


>gi|317482361|ref|ZP_07941381.1| DNA replication and repair protein RecF [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916241|gb|EFV37643.1| DNA replication and repair protein RecF [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 412

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 148/356 (41%), Gaps = 44/356 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I  G NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRASSTLPL 60

Query: 65  TRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              G  + +  +  A   G     + SI    R     R    + + +R  D + K   +
Sbjct: 61  IERGQTTATIRANVADDAGQTTTYEASI--HARGANRARINSGSSLYLR--DIIGKIPSV 116

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           S+  P   R+ SG    RR  +++    ++P + + +  F R+ + R  LL +   +++ 
Sbjct: 117 SF-TPEDQRLVSGDPGARRVMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANN 175

Query: 183 CSSIEA----------QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
              ++A          Q  E GV +   R  +I  L+         E F  I   L G  
Sbjct: 176 GQPMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLA---------EPFAAIYADLAGAG 226

Query: 233 DG-------------KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           +               FD     + E + ++++ G     ++   LIGP R D+ +D   
Sbjct: 227 EQVTLTYAPSFDEVLMFDDPHPQISEHF-QRIYPGEVARGVN---LIGPQRDDMNLDLAG 282

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                   S GE   + + + +A   ++ +  G  PI++LD++ A LD+ +R  + 
Sbjct: 283 IPAR-EFASNGEMWTMALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQIL 337


>gi|283782560|ref|YP_003373314.1| DNA replication and repair protein RecF [Gardnerella vaginalis
           409-05]
 gi|283442151|gb|ADB14617.1| DNA replication and repair protein RecF [Gardnerella vaginalis
           409-05]
          Length = 433

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 165/375 (44%), Gaps = 49/375 (13%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY---------ADVT 65
           FR++  +   F+    +  G+NG+GKTNI+EA+     G   R +S            + 
Sbjct: 11  FRSWNHIICDFNPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPLIKKGYEKSII 70

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL----------QINDVVIRVVDE 115
           RI + +    + + E   GL++I+  LE+  +++   +           IN      V +
Sbjct: 71  RINTINNDINYKKDETNTGLSNIA-SLESNLNQTTYEIDLYVKGSNRAHINSGKALYVKD 129

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           +   L I    P    +  G    RR F+D+    + P + + + +F+ + + R  LL  
Sbjct: 130 IVGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLIPNYVQLLQEFKHISKQRAALLKN 189

Query: 176 ----GYFDSSWC-SSIE---AQMAELGVKINIARVEMINALS----SLIMEYVQKENFPH 223
                Y + +   S +E    +  E G+ +  AR E +  ++    ++I  +  +EN   
Sbjct: 190 IRDFSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVQIINKYFKNIIKSFTNEENTEI 249

Query: 224 IKL-SLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKMDSMSRR-TLIGPHRSDLI 274
           I + S    L + K D++     E      E+ ++++DG     ++R   LIGPHR D  
Sbjct: 250 IYVPSFEEVLFEKKSDENIEDKNELFSKISEHFQRIYDGE----LARGCNLIGPHRDD-- 303

Query: 275 VDYCDKAITIAH-GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
           +D+    I+     S GE   + +   +A  + +       PI++LD++ A LDE++R  
Sbjct: 304 IDFAINNISAKDFASNGESWTIAIASKMALCKALEEKNNDKPIVILDDVFAQLDENRRIR 363

Query: 334 LFRIVTDIGSQIFMT 348
           +     + G Q+F+T
Sbjct: 364 ILNFALNQG-QVFIT 377


>gi|288916708|ref|ZP_06411083.1| DNA replication and repair protein RecF [Frankia sp. EUN1f]
 gi|288351963|gb|EFC86165.1| DNA replication and repair protein RecF [Frankia sp. EUN1f]
          Length = 433

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 6/170 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y  L LV +   T FVG NG GKTN++EAI F++     R A+ A +
Sbjct: 1   MHLTHLSLTDFRSYPRLDLVLEPGVTTFVGSNGQGKTNLIEAIGFVATLGSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+         V G    L +I I +  + +R    +++N   +    ++   L   
Sbjct: 61  VREGTTQAVVRSRIVRGDRAALVEIQI-VPGKANR----VRLNRAPVPRALDVAGLLATV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
              P    +  G   ERRRFLD ++ A  PR      D+ER+++ R+ LL
Sbjct: 116 LFAPEDLALVKGDPAERRRFLDELLVARSPRMAAVQADYERVLKQRSALL 165



 Score = 37.0 bits (84), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 7/110 (6%)

Query: 243 LKEEYAKKLFDG----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           L+ E A+ +  G    R  +     TL+GPHR DL++    +     + S GE   + + 
Sbjct: 300 LRAELAEAILTGLAAVRSQEIERGVTLVGPHRDDLLLSVKGRPAR-GYASHGESWSLALA 358

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           + LA   L+       P+LLLD++ A LD  +R  L  +V     Q+ +T
Sbjct: 359 LRLASYDLL-RADDREPVLLLDDVFAELDVRRRARLAALVAP-AEQVLVT 406


>gi|298253029|ref|ZP_06976821.1| RecF pathway recombinational DNA repair ATPase [Gardnerella
           vaginalis 5-1]
 gi|297532424|gb|EFH71310.1| RecF pathway recombinational DNA repair ATPase [Gardnerella
           vaginalis 5-1]
          Length = 433

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 165/375 (44%), Gaps = 49/375 (13%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY---------ADVT 65
           FR++  +   F+    +  G+NG+GKTNI+EA+     G   R +S            + 
Sbjct: 11  FRSWNHIICDFNPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPLIKKGYEKSII 70

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL----------QINDVVIRVVDE 115
           RI + +    + + E   GL++I+  LE+  +++   +           IN      V +
Sbjct: 71  RINTINNDINYKKDETNTGLSNIA-SLESNLNQTTYEIDLYVKGSNRAHINSGKALYVKD 129

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           +   L I    P    +  G    RR F+D+    + P + + + +F+ + + R  LL  
Sbjct: 130 IVGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLIPNYVQLLQEFKHISKQRAALLKN 189

Query: 176 ----GYFDSSWC-SSIE---AQMAELGVKINIARVEMINALS----SLIMEYVQKENFPH 223
                Y + +   S +E    +  E G+ +  AR E +  ++    ++I  +  +EN   
Sbjct: 190 IRDFSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVKIINKYFKNIIKSFTNEENTEI 249

Query: 224 IKL-SLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKMDSMSRR-TLIGPHRSDLI 274
           I + S    L + K D++     E      E+ ++++DG     ++R   LIGPHR D  
Sbjct: 250 IYVPSFEEVLFEKKSDENIEDKNELFSKISEHFQRIYDGE----LARGCNLIGPHRDD-- 303

Query: 275 VDYCDKAITIAH-GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
           +D+    I+     S GE   + +   +A  + +       PI++LD++ A LDE++R  
Sbjct: 304 IDFAINNISAKDFASNGESWTIAIASKMALCKALEEKNNDKPIVILDDVFAQLDENRRIR 363

Query: 334 LFRIVTDIGSQIFMT 348
           +     + G Q+F+T
Sbjct: 364 ILNFALNQG-QVFIT 377


>gi|291532568|emb|CBL05681.1| hypothetical protein MHY_05980 [Megamonas hypermegale ART12/1]
          Length = 194

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 7/189 (3%)

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFDQS 239
           +W   I A+ A   V+  +  +E ++ L+  I  E  QK    +I+ ++  + +   + S
Sbjct: 4   TWDEQI-AKTAAFIVEKRLRSIEKLSKLAQKIHYEISQKMEILNIRYNIHNYKNEALN-S 61

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVG 298
           F  L   Y + L   R  D     T IGPHR D  +D+    I++ + GS G+Q+  ++ 
Sbjct: 62  FDDLFNFYIQALSKYRDNDIYRGSTSIGPHRDD--IDFFINDISLKSFGSQGQQRSSVLS 119

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA    +   TG  PILLLD++ + LD  +R+ L  ++ D   Q  +T TD ++F+S 
Sbjct: 120 LKLAELEFLKLETGEYPILLLDDVMSELDTRRRDNLLSLLQDNNVQTLITATDINLFNS- 178

Query: 359 NETAKFMRI 367
           +   KF ++
Sbjct: 179 HPKNKFFKV 187


>gi|315605505|ref|ZP_07880542.1| recombination protein F [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312772|gb|EFU60852.1| recombination protein F [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 398

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 162/404 (40%), Gaps = 45/404 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FR++    +   A  T+ VG NG GKTN++EA+++LS     R  +   +
Sbjct: 1   MRVSHLALDDFRSWKHGVVELPAGTTVLVGANGQGKTNLVEALAYLSAFSSHRVGAEGAL 60

Query: 65  TRIGS------PSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            RI S      P      AR+   G E + ++ I +  + +R+    +IN   +R  D L
Sbjct: 61  VRIPSDEAENPPGGAVIRARIVSSGREQVVELEI-VRGKANRA----RINRAQVRPRDIL 115

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              +R     P    +       RR FLD +   + P H     DF+R+ R R  L+   
Sbjct: 116 GL-VRTVVFAPEDLSLVRADPSVRRSFLDDLATQLSPLHASVRADFDRVARQRAALMKAA 174

Query: 177 YFDS--------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKL 226
              S        S     + Q AEL  +I+  R  +  AL    +E  ++  ++      
Sbjct: 175 QASSRRGRTPDLSTLHVWDCQFAELSARISATRAAVAAAL----VEPTRRAYDDVADSPR 230

Query: 227 SLTGFLDGKFDQSFCALKEEYAKK-LFDGRKM------------DSMSRR--TLIGPHRS 271
            LT   D   D+      E+ A   L D +              D    R   L+G HR 
Sbjct: 231 RLTLAFDASVDRVIGTDPEDPASADLTDAQAQAERMLAALAHVRDKEIERGVNLVGAHRD 290

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           DL +      +   + S GE   V + + L    L+S+     PIL+LD++ A LD  +R
Sbjct: 291 DLSLSLGSMPVK-GYASHGESWSVALALRLGAFELLSDGED-TPILILDDVFAELDSSRR 348

Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
             L  + +     I      + +  SL   A  +R+   +   I
Sbjct: 349 QGLASLASRAEQVIVTCAVAEDLPSSLPHHALHVRLDAERGTVI 392


>gi|304309655|ref|YP_003809253.1| Recombinational DNA repair ATPase [gamma proteobacterium HdN1]
 gi|301795388|emb|CBL43586.1| Recombinational DNA repair ATPase [gamma proteobacterium HdN1]
          Length = 393

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 160/375 (42%), Gaps = 48/375 (12%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L IS+FRN  ++ +         VG NG GKT++LEA+  L+ G+ FR  +     R G+
Sbjct: 6   LEISDFRNLKAVEIAPAQGLNWVVGPNGSGKTSLLEALHLLATGKSFRANNLRSCIRGGA 65

Query: 70  PSFFSTFARVEGMEGLA---DISIKLETRDDRS--VRCLQINDVVIRVVDELNKHLRISW 124
            +      RV  ++  A   D+  +L    D S  VR + ++ + +  +  L   + +  
Sbjct: 66  KT-----CRVVCLKNAAAYPDVIQRLGVERDLSGGVRAV-LDQLEVTKLSGLANQIAVCT 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPR--HRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           L+P    +  G    RR FL   +F ++    + + + D+   ++ RN LL         
Sbjct: 120 LLPDSINLLIGDPSLRREFLGWSMFHVEHNSDYLQVLRDYRFSLQQRNALLRRLNGSELP 179

Query: 183 CSSIEA-----------QMAELGVKINIARVEMINALSSLIMEYVQKE-----------N 220
            S  EA           Q+ +  +K++  R   +          + KE           N
Sbjct: 180 LSGNEAIRSKELDGWDRQLGKFALKLDERRSHFMTLFRERYFSLISKEQLNLRSSSYSSN 239

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
             H +L L G+ DG       +L++  A    + R  D     T  GPHR+D+ + Y  K
Sbjct: 240 EVHFEL-LRGWPDG------VSLEDALA----EARMRDIERGFTGSGPHRADIRISYAGK 288

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVT 339
            +   + S G+ K ++    L  A LI ++ G    + + D+  A LDE+  +++   + 
Sbjct: 289 PVR-DYFSRGQLKHLISICVLVQADLIRSSRGKDGLVFIFDDAFAELDENHASSVLAALR 347

Query: 340 DIGSQIFMTGTDKSV 354
            I  Q F+T +D +V
Sbjct: 348 SISVQTFVTTSDAAV 362


>gi|47093015|ref|ZP_00230794.1| DNA replication and repair protein RecF [Listeria monocytogenes
           str. 4b H7858]
 gi|47018583|gb|EAL09337.1| DNA replication and repair protein RecF [Listeria monocytogenes
           str. 4b H7858]
 gi|328468326|gb|EGF39332.1| recombination protein F [Listeria monocytogenes 1816]
          Length = 326

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 132/309 (42%), Gaps = 43/309 (13%)

Query: 77  ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL 136
           A++EG       S+ LE    +  +  ++N +  + + +   +L +    P    +  G 
Sbjct: 24  AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVKGA 83

Query: 137 SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQMAE 192
              RRRFL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q A+
Sbjct: 84  PGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQFAD 143

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL- 251
           + + +   R + I  L +                     +  +  +    LK EY   + 
Sbjct: 144 VAINLTKRRADFIQKLEAY-----------------AAPIHHQISRGLETLKIEYKASIT 186

Query: 252 FDG-----------RKMDSMSRR------TLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +G           +KM+S+ +R      TLIGPHR D +  Y +       GS G+Q+ 
Sbjct: 187 LNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF-YINGQNVQDFGSQGQQRT 245

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
             + I LA   LI   TG  P+LLLD++ + LD+ +++ L   + +   Q F+T T  S 
Sbjct: 246 TALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAI-EGKVQTFVTTTSTSG 304

Query: 355 FDSLNETAK 363
            D  +ET K
Sbjct: 305 ID--HETLK 311


>gi|291517731|emb|CBK71347.1| DNA replication and repair protein RecF [Bifidobacterium longum
           subsp. longum F8]
          Length = 412

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 147/356 (41%), Gaps = 44/356 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I  G NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60

Query: 65  TRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              G  + +  +  A   G     + SI    R     R    + + +R  D + K   +
Sbjct: 61  IERGQTTATIRANVADDAGQTTTYEASI--HARGANRARINSGSSLYLR--DIIGKIPSV 116

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------- 175
           S+  P   R+ SG    RR  +++    ++P + + +  F R+ + R  LL +       
Sbjct: 117 SF-TPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANVNN 175

Query: 176 GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           G    +  S +E    Q  E GV +   R  +I  L+         E F  I   L G  
Sbjct: 176 GQPMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLA---------EPFAAIYADLAGAG 226

Query: 233 DG-------------KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           +               FD     + E + ++++ G     ++   LIGP R D+ ++   
Sbjct: 227 EQVTLTYAPSFDEVLMFDDPHPQISEHF-QRIYPGEVARGVN---LIGPQRDDMNLELAG 282

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                   S GE   + + + +A   ++ +  G  PI++LD++ A LD+ +R  + 
Sbjct: 283 IPAR-EFASNGEMWTMALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQIL 337


>gi|296453190|ref|YP_003660333.1| DNA replication and repair protein RecF [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296182621|gb|ADG99502.1| DNA replication and repair protein RecF [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 412

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 148/357 (41%), Gaps = 46/357 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I  G NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60

Query: 65  TRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              G  + +  +  A   G     + SI    R     R    + + +R  D + K   +
Sbjct: 61  IERGQTTATIRANVADDAGQTTTYEASI--HARGANRARINSGSSLYLR--DIIGKIPSV 116

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------- 175
           S+  P   R+ SG    RR  +++    ++P + + +  F R+ + R  LL +       
Sbjct: 117 SF-TPEDQRLVSGDPGARRVMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANN 175

Query: 176 GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           G    +  S +E    Q  E GV +   R  +I  L+         E F  I   L G  
Sbjct: 176 GQPMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLA---------EPFAAIYADLAGAG 226

Query: 233 DG-------------KFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYC 278
           +               FD     + E + ++++ G     M+R   LIGP R D+ ++  
Sbjct: 227 EQVTLTYAPSFDEVLMFDDPHPQISEHF-QRIYPGE----MARGVNLIGPQRDDMNLELA 281

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                    S GE   + + + +A   ++ +  G  PI++LD++ A LD+ +R  + 
Sbjct: 282 GIPAR-EFASNGEMWTMALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQIL 337


>gi|317472422|ref|ZP_07931747.1| DNA replication and repair protein RecF [Anaerostipes sp.
           3_2_56FAA]
 gi|316900142|gb|EFV22131.1| DNA replication and repair protein RecF [Anaerostipes sp.
           3_2_56FAA]
          Length = 216

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 20/198 (10%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQK 218
           + R+M  RN LL +  +      ++++   Q+ + G ++   R + I  L+ +I E    
Sbjct: 9   YNRVMAQRNNLLKQLAYQRELLDTLDSWDLQLVKYGSEVIRYRQKFIEDLNEIIRE---- 64

Query: 219 ENFPHIKLSLTGFLDG---KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
                I  +LTG  +    K+D S     +E+   L   R++D     T  GPHR D  +
Sbjct: 65  -----IHKNLTGKKEKIVLKYDYSVNY--DEFLTVLQRKREIDLKYASTGAGPHRDD--I 115

Query: 276 DYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           ++    I I   GS G+Q+   + + LA   L+   TG  PILLLD++ + LD  ++N L
Sbjct: 116 EFLVNGIDIRKFGSQGQQRTAALSLKLAQIELVKRQTGETPILLLDDVLSELDSSRKNYL 175

Query: 335 FRIVTDIGSQIFMTGTDK 352
              + DI + I  TG ++
Sbjct: 176 LDSIKDIQTLITCTGLEE 193


>gi|332359507|gb|EGJ37326.1| recombination protein F [Streptococcus sanguinis SK1056]
          Length = 287

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 111/263 (42%), Gaps = 13/263 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I  FRNY    + F     +F+G N  GKTNILEAI FL+  R  R  S  D+     
Sbjct: 6   LKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTCSDKDLIHFTE 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                +   +E   G   + I L  +     R  ++N +    + +    + +    P  
Sbjct: 66  NDLLVS-GILEKKTGKVPLDINLTPKG----RITKVNHLKQSKLSDYIGTMNVVLFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEA 188
            ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ + ++ 
Sbjct: 121 LQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNSYLKANDKVDETFLTVLDE 180

Query: 189 QMAELGVKINIARVEMINALSSLIME--YVQKENFPHIKLS-LTGFLDGKFDQSFCALKE 245
           Q+ + G ++   R++ +  L S   +  +   +N   + +  L+     K D     L+E
Sbjct: 181 QLVDYGCRVIKHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPLHKIDN----LEE 236

Query: 246 EYAKKLFDGRKMDSMSRRTLIGP 268
            Y   L + RK D   +  ++ P
Sbjct: 237 TYRSSLLNSRKRDLFKKIQVLVP 259


>gi|78211946|ref|YP_380725.1| DNA replication and repair protein RecF [Synechococcus sp. CC9605]
 gi|97181068|sp|Q3AML2|RECF_SYNSC RecName: Full=DNA replication and repair protein recF
 gi|78196405|gb|ABB34170.1| DNA replication and repair protein RecF [Synechococcus sp. CC9605]
          Length = 364

 Score = 67.4 bits (163), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 140/311 (45%), Gaps = 22/311 (7%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN+  L+L       + +G NG+GK+N+LEA+  L   R  R ++  D+ +  +P    
Sbjct: 4   FRNHTVLQLELTQPRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSNDRDLIQWDTPQ--- 60

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A +    G  D  ++LE R     +  +   ++ R +D +     I +    +D +  
Sbjct: 61  --ALIRADVGDGD-RLELELRRQGGRQARRNGKLLDRQLDLIGPLRCIGFSALDLD-LVR 116

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SWCSSIEAQM 190
           G    RR++LDR+V  ++P +   M    RL+R R++L  +    S    +   + + QM
Sbjct: 117 GEPALRRQWLDRVVLQLEPVYADLMARLNRLLRQRSQLWRQRQISSGERHALLEAFDVQM 176

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFC--ALK 244
           A +  +I+  R   ++ L  +   +    +     L L       LDG+  +     A++
Sbjct: 177 ALVSTRIHRRRQRALHRLEPIAQRWQTHLSGGTETLELHYKPGSRLDGEDAEEPWRLAIE 236

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  ++  +  ++ S      +GPHR D I      +     GS G+Q+ +++G+ LA  
Sbjct: 237 EQLRQQREEEERLGSCR----VGPHR-DEIALLLGGSPARRFGSAGQQRSLVLGLKLAEL 291

Query: 305 RLISNTTGFAP 315
            L++   G  P
Sbjct: 292 ELVTQLCGEPP 302


>gi|229077279|ref|ZP_04209964.1| DNA replication and repair protein recF [Bacillus cereus Rock4-2]
 gi|228706028|gb|EEL58331.1| DNA replication and repair protein recF [Bacillus cereus Rock4-2]
          Length = 293

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 117/264 (44%), Gaps = 13/264 (4%)

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           + +    P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +
Sbjct: 29  MNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGN 88

Query: 180 S----SWCSSIEAQMAELGVKINIARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFL 232
           S    +       Q+ E G KI   R E ++ L   ++ I   + +     +++     +
Sbjct: 89  SKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISR-GLEELEIVYKPSV 147

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           D         +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q
Sbjct: 148 DVSESMDLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQ 206

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-- 350
           +   + + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T  
Sbjct: 207 RTTALSLKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSV 265

Query: 351 DKSVFDSLNETAKFMRISNHQALC 374
           D    ++L E AK + ++N    C
Sbjct: 266 DGIEHETLKE-AKTIHVTNGTVDC 288


>gi|148980122|ref|ZP_01815902.1| recombination protein F [Vibrionales bacterium SWAT-3]
 gi|145961423|gb|EDK26729.1| recombination protein F [Vibrionales bacterium SWAT-3]
          Length = 359

 Score = 67.0 bits (162), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 155/365 (42%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN  +  +   +     +G NG GKT++LEA+  L  GR F+ +    + +   
Sbjct: 6   LIVKQFRNIEACDIQPSSGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRIIQNEC 65

Query: 70  PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              F     V G    +D   + I +  + D +   ++I+    + + +L + L +  + 
Sbjct: 66  SELF-----VHGRFMTSDQFELPIGINKQRDGTTE-VKISGQTGQKLAQLAQVLPLQLIH 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P    + +     RR F+D  VF  +          +RL + RN LL T  ++     S 
Sbjct: 120 PEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATHYRE--LSY 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++A L   I+  R   +N L   + E +     P  ++ +  +     D        
Sbjct: 178 WDQELARLAESISEWRATYVNQLKE-VAEEICATFLPEFEIKINYYRGWDKDTP------ 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            YA+ L    + D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 231 -YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   +    +Q+F++  T   + D  +E ++ 
Sbjct: 289 HLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATEAQVFVSSITADQIADMHDENSRM 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|329944738|ref|ZP_08292817.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328529874|gb|EGF56764.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 405

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 157/385 (40%), Gaps = 47/385 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++ +FR+Y +L L  +   + FVG NG GKTN++EAI +L+     R  +   + R
Sbjct: 3   VSDLSLDDFRSYRNLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTALVR 62

Query: 67  IGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              P          R   + G     +++E    ++ R  ++N    R  D L   LR  
Sbjct: 63  RAVPGQSQPAGAVVRARAVHGERPSVLEIEIIAGKANRA-RLNRGSCRPRDLLGV-LRTV 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    +       RR FLD +V  + P       + ++++  R  LL       S  
Sbjct: 121 VFAPEDLSLVRNEPGVRRGFLDDLVVTLRPGLAGVRAEHDKILAQRASLLKSARAARSST 180

Query: 184 SSI-------EAQMAELGVKINIARVEMINAL--------------------------SS 210
           +S+       + Q+A    ++  ARV+++  L                          SS
Sbjct: 181 ASMLSTLEVWDTQLAAAAARLITARVDVVRRLRPWVASAYETVSGSSGERSRAQLAYRSS 240

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
           L+      +  PH + +     +   D++    + E A      R++D  +   L+G HR
Sbjct: 241 LLGHEGSPDPDPHDEAAWLAGEESLLDEAAVTTRLESAMGELHAREIDRGA--NLVGAHR 298

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFA----PILLLDEISAH 325
            DL + +          S GEQ  + + + LA   ++ ++   +     P+L+LD++ A 
Sbjct: 299 DDLSL-FLTGLPARGFASHGEQWSLALALRLASYDMLRTDVDAYGGDGEPVLILDDVFAS 357

Query: 326 LDEDKRNALFRIVTDIGSQIFMTGT 350
           LDE +R AL R+V     Q+ +T  
Sbjct: 358 LDEQRRRALARMVAG-AQQVLLTAA 381


>gi|46200023|ref|YP_005690.1| recF protein [Thermus thermophilus HB27]
 gi|46197650|gb|AAS82063.1| recF protein [Thermus thermophilus HB27]
          Length = 343

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 148/342 (43%), Gaps = 34/342 (9%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN A          +  VG N  GKT++L  I  L+ G G      AD+ R G    + 
Sbjct: 11  FRNLALEAYRPPPGLSALVGANAQGKTSLLLGI-HLALG-GEVPLGLADLVRFGEEEAW- 67

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHLRISWLVPSMDRI 132
             A VE   G    + +LE R     R + +N   V +R + EL   + +S L   ++ +
Sbjct: 68  LHAEVETELG----AYRLEHRLGPGGREVLLNGKRVSLRALWELPGSVLVSPL--DLEAV 121

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
             G   ERR +LDR++     R+   +  +E+ +R RN LL  G       S+ + ++A 
Sbjct: 122 L-GPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNALLKAG---GEGLSAWDRELAR 177

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCALKEEYAKKL 251
            G +I   R   +   + ++ E         +  +L     G + +++     E   + L
Sbjct: 178 YGDEIVALRRRFLRRFAPILRE---------VHAALAAKEAGLRLEETA---GEGVLRAL 225

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLAHARLISN 309
              R  +    +TL+GPHR DL+     +    AH   S GE K + + + LA  RL+  
Sbjct: 226 EASRAEERERGQTLVGPHRDDLVFLLEGRP---AHRFASRGEAKTLALALRLAEHRLLGE 282

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             G  P+LL+DE    LDE +R A+      +  Q  + G +
Sbjct: 283 HHGEPPLLLVDEWGEELDEARRRAVLAYAQAL-PQAILAGLE 323


>gi|213690932|ref|YP_002321518.1| DNA replication and repair protein RecF [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|254790465|sp|B7GSG2|RECF_BIFLI RecName: Full=DNA replication and repair protein recF
 gi|213522393|gb|ACJ51140.1| DNA replication and repair protein RecF [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320456978|dbj|BAJ67599.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 412

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 148/351 (42%), Gaps = 42/351 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I  G NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60

Query: 65  TRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              G  + +  +  A   G     + SI    R     R    + + +R  D + K   +
Sbjct: 61  IERGQTTATIRANVADDAGQTTTYEASI--HARGANRARINSGSSLYLR--DIIGKIPSV 116

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           S+  P   R+ SG    RR  +++    ++P + + +  F R+ + R  LL +   +++ 
Sbjct: 117 SF-TPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANN 175

Query: 183 CSSIEA----------QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
              ++A          Q  E GV +   R  +I+ L+         E F  I   L G  
Sbjct: 176 GQPMDAVLSGLEIWTGQFIEAGVVLTRMRAHVISLLA---------EPFAAIYADLAGAG 226

Query: 233 D-------GKFDQSFC-----ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
           +         FD+            E+ ++++ G     ++   LIGP R D+ +D    
Sbjct: 227 EQVTLTYAPSFDEVLMFNDPHPQISEHFQRIYPGEVARGVN---LIGPQRDDMNLDLAGI 283

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
                  S GE   + + + +A   ++ +  G  PI++LD++ A LD+ +R
Sbjct: 284 PAR-EFASNGEMWTMALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRR 333


>gi|23335941|ref|ZP_00121172.1| COG1195: Recombinational DNA repair ATPase (RecF pathway)
           [Bifidobacterium longum DJO10A]
 gi|227547509|ref|ZP_03977558.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|312133630|ref|YP_004000969.1| recf [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688194|ref|YP_004207928.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           157F]
 gi|227212024|gb|EEI79920.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|311772888|gb|ADQ02376.1| RecF [Bifidobacterium longum subsp. longum BBMN68]
 gi|320459530|dbj|BAJ70150.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           157F]
          Length = 412

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 147/356 (41%), Gaps = 44/356 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I  G NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60

Query: 65  TRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              G  + +  +  A   G     + SI    R     R    + + +R  D + K   +
Sbjct: 61  IERGQTTATIRANVADDAGQTTTYEASI--HARGANRARINSGSSLYLR--DIIGKIPSV 116

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------- 175
           S+  P   R+ SG    RR  +++    ++P + + +  F R+ + R  LL +       
Sbjct: 117 SF-TPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANVNN 175

Query: 176 GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           G    +  S +E    Q  E GV +   R  +I  L+         E F  I   L G  
Sbjct: 176 GQPMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLA---------EPFAAIYADLAGAG 226

Query: 233 DG-------------KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           +               FD     + E + ++++ G     ++   LIGP R D+ ++   
Sbjct: 227 EQVTLTYAPSFDEVLMFDDPHPQISEHF-QRIYPGEVARGVN---LIGPQRDDMNLELGG 282

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                   S GE   + + + +A   ++ +  G  PI++LD++ A LD+ +R  + 
Sbjct: 283 IPAR-EFASNGEMWTMALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQIL 337


>gi|239622840|ref|ZP_04665871.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|239514837|gb|EEQ54704.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 412

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 148/356 (41%), Gaps = 44/356 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I  G NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60

Query: 65  TRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              G  + +  +  A   G     + SI    R     R    + + +R  D + K   +
Sbjct: 61  IERGQTTATIRANVADDAGQTTTYEASI--HARGANRARINSGSSLYLR--DIIGKIPSV 116

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           S+  P   R+ SG    RR  +++    ++P + + +  F R+ + R  LL +   +++ 
Sbjct: 117 SF-TPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANN 175

Query: 183 CSSIEA----------QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
              ++A          Q  E GV +   R  +I  L+         E F  I   L G  
Sbjct: 176 GQPMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLA---------EPFAAIYADLAGAG 226

Query: 233 DG-------------KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           +               FD     + E + ++++ G     ++   LIGP R D+ ++   
Sbjct: 227 EQVTLTYAPSFDEVLMFDDPHPQISEHF-QRIYPGEVARGVN---LIGPQRDDMNLELGG 282

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                   S GE   + + + +A   ++ +  G  PI++LD++ A LD+ +R  + 
Sbjct: 283 IPAR-EFASNGEMWTMALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQIL 337


>gi|294790226|ref|ZP_06755384.1| RecF protein [Scardovia inopinata F0304]
 gi|294458123|gb|EFG26476.1| RecF protein [Scardovia inopinata F0304]
          Length = 422

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 148/370 (40%), Gaps = 55/370 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG------------- 53
           I  L +  +R++ +  +       +  G NG+GKTNI+EAI FLS               
Sbjct: 3   ISRLALDHYRSWNTCLIDLTDSVNVLYGHNGLGKTNIVEAIEFLSTSSSHRVNSSQPLIQ 62

Query: 54  RGFRRASYADVTRIGSPSFFSTFA--RVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
           RG+++A+      I S +  S     R E        ++ +  R    VR    + + +R
Sbjct: 63  RGYKQATIRANLEIPSQAGSSKQGSFRQESARQTERFTVTIPIRGANRVRVNNNSSLYMR 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
              ++   ++     P    + S     RRRFLD     + P +      +  + R R  
Sbjct: 123 ---DIVGQIKTVVFAPEDQWLLSLDPSRRRRFLDDAGIQLIPEYYDLSQKYSHIARQRVA 179

Query: 172 LLTE---GYFDSS---------WCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQK 218
           LL     G  +SS         W      Q+   G+ ++  R +++  LS L  E Y Q 
Sbjct: 180 LLKNMGSGQRESSADDYTGLEIWT----GQLISTGLSLSTMRQKIVEKLSPLFSEIYAQL 235

Query: 219 ENFPH-IKLSLTGFLDGKFDQS---FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
               H  +L+        FDQS   F  +   + ++LF G        R LIGPHR DL 
Sbjct: 236 AGSEHKAQLAYHPSFAEIFDQSDDPFTLISNHF-QRLFPGELAQG---RNLIGPHRDDL- 290

Query: 275 VDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLIS---------NTTGFAPILLLDEISA 324
            D+    +    + S GE   + + + +A  +L+S         +     PIL+LD++ +
Sbjct: 291 -DFSLHGMPAKEYASNGEMWTMALALKMALFQLLSENLLSESSVSAGAGKPILILDDVFS 349

Query: 325 HLDEDKRNAL 334
            LD  +R  +
Sbjct: 350 QLDTSRREKI 359


>gi|206895150|ref|YP_002247528.1| RecF/RecN/SMC N domain, putative [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206737767|gb|ACI16845.1| RecF/RecN/SMC N domain, putative [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 342

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 147/328 (44%), Gaps = 38/328 (11%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ + +  FRN  +  +      T+ +G+N  GKT++LE++  +S GR FR  +  D+ 
Sbjct: 3   RVRSIKLYNFRNLLNQEIEIPDGLTVLMGENMQGKTSLLESLFIVSTGRSFRTRNIGDIV 62

Query: 66  RIGSPSFFSTFARVEGMEGLADI--SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           R G        A++E     A++  S+ LE +     R L +N   I   +       + 
Sbjct: 63  RWGENQ-----AQIELSVDGANVVFSVSLEPK----ARSLLLNGERISSFESPLAGKVLY 113

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +    +D + +      RR  DR++   D  + R    + +L+  RN +L+ G+++    
Sbjct: 114 YSDEYLDLVSTPSGT--RRLFDRLLELSDRENMRLAAQYRKLVSERNSMLSSGFYNEPLD 171

Query: 184 SSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
             +  ++ ++  K    R   ++++ A  +L         FP +           FD S+
Sbjct: 172 EVLSDRIDKISQKWREKRQAFLQLVQASLNL--------RFPQV-----------FDSSY 212

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            + K            ++ + + TL G  R  +++D  +K ++    S G  K++L  +F
Sbjct: 213 -SFKFSVETSDIKNLSLEMLKKTTLFGFQRDKILLDVNNKEVSTV-ASRGFLKILLTFVF 270

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDE 328
           +  A LI    G+  +LL+D+ +A++DE
Sbjct: 271 VRTAELIHEKQGYV-LLLMDDFNANIDE 297


>gi|55980233|ref|YP_143530.1| recombination protein F [Thermus thermophilus HB8]
 gi|55771646|dbj|BAD70087.1| RecF protein [Thermus thermophilus HB8]
          Length = 343

 Score = 66.6 bits (161), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 148/342 (43%), Gaps = 34/342 (9%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN A          +  VG N  GKT++L  I  L+ G G      AD+ R G    + 
Sbjct: 11  FRNLALEAYRPPPGLSALVGANAQGKTSLLLGI-HLALG-GEVPLGLADLVRFGEEEAW- 67

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHLRISWLVPSMDRI 132
             A VE   G    + +LE R     R + +N   V +R + EL   + +S L   ++ +
Sbjct: 68  LHAEVETELG----AYRLEHRLGPGGREVLLNGKRVSLRTLWELPGSVLVSPL--DLEAV 121

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
             G   ERR +LDR++     R+   +  +E+ +R RN LL  G       S+ + ++A 
Sbjct: 122 L-GPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNALLKAG---GEGLSAWDRELAR 177

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCALKEEYAKKL 251
            G +I   R   +   + ++ E         +  +L     G + +++     E   + L
Sbjct: 178 YGDEIVALRRRFLRRFAPILRE---------VHAALAAKEAGLRLEETAG---EGVLRAL 225

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLAHARLISN 309
              R  +    +TL+GPHR DL+     +    AH   S GE K + + + LA  RL+  
Sbjct: 226 EASRAEERERGQTLVGPHRDDLVFLLEGRP---AHRFASRGEAKTLALALRLAEHRLLGE 282

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             G  P+LL+DE    LDE +R A+      +  Q  + G +
Sbjct: 283 HHGEPPLLLVDEWGEELDEARRRAVLAYAQAL-PQAILAGLE 323


>gi|327398177|ref|YP_004339046.1| SMC domain-containing protein [Hippea maritima DSM 10411]
 gi|327180806|gb|AEA32987.1| SMC domain protein [Hippea maritima DSM 10411]
          Length = 326

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 160/352 (45%), Gaps = 52/352 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + I+ FRN+  L + FD +  I  G NG GKTN++EA+     G  F+         
Sbjct: 3   IKNIIITNFRNFNLLEVKFD-KINIIKGKNGTGKTNLIEAVYLTLNGHPFKNNLKVLKKE 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           +  P+  +              +I ++  DD+  + ++++  ++RVVD       +++ +
Sbjct: 62  LEKPTILNAIIDKH--------TIFIKIDDDK--KYIKLDSKLVRVVDLKKTFACLNYSI 111

Query: 127 PSM------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            S       D +FS         +DR + + D     ++I++++  R +  L +    D 
Sbjct: 112 NSFISFRSKDYLFS--------LVDRGISSYDHSIIDKLIEYKKTNRLKKELFSSPKPDY 163

Query: 181 SWCSSIEAQMAELGVKINIAR----VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
           +  + +  ++  +  +I++ R    +++ N + +    +  K      KL L  +  GK+
Sbjct: 164 NMLNFLNDKIKSIVDEISLKRDGFILKLKNDVENCFCSFFGK------KLELI-YEIGKY 216

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           + S    KE+   ++  G K DS+     I  +  DL +          + S GE+K+ L
Sbjct: 217 NDSVFE-KEKQKNRVLFGFKKDSLK----IILNNKDLFL----------YSSVGEKKISL 261

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           + I L+ A++  N++G  PILL+D++   LD   +   F I+  + +Q  +T
Sbjct: 262 LCIVLSIAKM-YNSSGVEPILLIDDLEGDLDPQVQKRAFDIIKTLPNQSIIT 312


>gi|315170510|gb|EFU14527.1| DNA replication and repair protein RecF [Enterococcus faecalis
           TX1342]
          Length = 200

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 96/202 (47%), Gaps = 9/202 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             IG   +    A++ G+      ++ LE       R  ++N +  + +      L +  
Sbjct: 61  --IG---WEQAAAKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +       D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARV 202
            +   +  Q+AE G K+  AR+
Sbjct: 176 VYLDILTEQLAEFGGKVLYARL 197


>gi|71064584|ref|YP_263311.1| DNA replication and repair protein RecF [Psychrobacter arcticus
           273-4]
 gi|71037569|gb|AAZ17877.1| DNA replication and repair protein RecF [Psychrobacter arcticus
           273-4]
          Length = 404

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 160/410 (39%), Gaps = 82/410 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L IS  RN   + L   A   + +G NG GKT++LE +  LS G+ FR         
Sbjct: 2   IERLQISYLRNLTPINLA-PAACNVIIGANGSGKTSLLEGMFLLSRGKSFRH-------- 52

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLE-------TRDDRSVRCLQINDVVIRVVDELNKH 119
              P  +     ++  +  A +  KL         +   +   L++N   +     L + 
Sbjct: 53  -NQPKRY-----IQHHKDAATVHAKLSDGRTLAIQKQADATTILRLNQTTVYNQSILTEQ 106

Query: 120 LRISWLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           L    + PS MD +  G S  RR+ LD +VF +      + I ++RL++ RN LL +   
Sbjct: 107 LPTLLIDPSTMDMLEQG-SASRRQLLDWLVFHMKQGFHPQWIAYQRLLKQRNSLLKQRRH 165

Query: 179 DSSWCSSIEAQMAELGV--KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
            +        Q+AEL    K   +   +I+     I E  Q    P+   S+   L    
Sbjct: 166 LT------HVQLAELRAWDKGLASHAALIHHYREAIFEAWQ----PYFSESIAQLLPAYA 215

Query: 237 DQSFCALKEEYAK------KLFDGRKMDSMSRRTLIGPHRSDLIV------------DYC 278
           +Q   +    Y        +L +    D     T IG HR+D+ V            ++ 
Sbjct: 216 EQLSLSYNAGYDTSVALDIQLNERLDQDLQLGYTRIGNHRADIHVHWRSIRPIHKANEHL 275

Query: 279 DKAITIAHGST----------------GEQKVVLVGIFLAHARLISNT------------ 310
           +  +  A  ST                GE+K+++  + L+   L+ NT            
Sbjct: 276 NSPLAAAADSTFKLPILKEQAANILSRGEKKLLITALRLSQLPLLLNTGNDLEASVNDAK 335

Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
               P++LLD+I+A LD+     L   +  +  Q+FMT    S+   + E
Sbjct: 336 LSATPVVLLDDITAELDDRAIEILLSTLAQLPCQVFMTSLTDSILPLVYE 385


>gi|46200852|ref|ZP_00207873.1| COG1195: Recombinational DNA repair ATPase (RecF pathway)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 83

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 48/73 (65%)

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + I LA  R+ + T G AP+LLLDE++AHLDE +R ALF  +  +  Q +MTGTD  +F 
Sbjct: 1   MSIVLAQGRVQNQTGGRAPLLLLDEVAAHLDEVRRAALFDELCALRVQSWMTGTDAMLFA 60

Query: 357 SLNETAKFMRISN 369
              E A+F R+++
Sbjct: 61  GFGERAQFFRVTD 73


>gi|93004836|ref|YP_579273.1| DNA replication and repair protein RecF [Psychrobacter
           cryohalolentis K5]
 gi|92392514|gb|ABE73789.1| DNA replication and repair protein RecF [Psychrobacter
           cryohalolentis K5]
          Length = 402

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 168/405 (41%), Gaps = 74/405 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L IS  RN   + L   A   + +G NG GKT++LEAI  LS G+ FR        +
Sbjct: 2   IERLQISHLRNLTHINLS-PAACNVIIGANGSGKTSLLEAIFLLSRGKSFRHHQPKRYIQ 60

Query: 67  IGSPSFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                 +   A +     L D  ++ ++ + D +   L++N   +     L + L    +
Sbjct: 61  -----HYQESATIHA--NLNDSRTLAIQKKAD-ATTILRLNQTTVYNQSILTEQLPTLLI 112

Query: 126 VPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            PS MD +  G S  RR+ LD +VF +      + + ++RL++ RN LL +    +    
Sbjct: 113 DPSTMDMLEQG-SASRRQLLDWLVFHMKQGFHSQWVAYQRLLKQRNSLLKQRRHLT---- 167

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENF-PHIKLSLTGFLDGKFDQSFC 241
             + Q+AEL      A  + +++ ++LI  Y Q   E + P+   S+   L    +Q   
Sbjct: 168 --QVQLAELK-----AWDKGLSSHAALIHHYRQAIFEAWQPYFSKSIAQLLPAYAEQLSL 220

Query: 242 ALKEEYAK------KLFDGRKMDSMSRRTLIGPHRSDLIVDY------------------ 277
           +    Y        +L +  + D     T IG HR+D+ V +                  
Sbjct: 221 SYNAGYDTGIALDIQLNERLEQDLQLGYTRIGNHRADIHVHWRSIGSRQIADENLNSPLS 280

Query: 278 ----------CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT------------GFAP 315
                      ++A  I   S GE+K+++  + L+   L+ N                 P
Sbjct: 281 ADSTVKLPILKEQAANIL--SRGEKKLLITALRLSQLPLLLNAKTNSELYNSDAKLSATP 338

Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           ++LLD+I+A LD      L   +  +  Q+F+T    S+   ++E
Sbjct: 339 VVLLDDITAELDNKAIEILLSTLAQLPCQVFVTSLTDSILPLVHE 383


>gi|158311871|ref|YP_001504379.1| DNA replication and repair protein RecF [Frankia sp. EAN1pec]
 gi|158107276|gb|ABW09473.1| DNA replication and repair protein RecF [Frankia sp. EAN1pec]
          Length = 457

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 4/169 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA L LV +   T FVG NG GKTN++EAI F++     R A+ A +
Sbjct: 1   MHLTHLSLTDFRSYARLDLVLEPGVTTFVGSNGQGKTNLIEAIGFVATLGSHRVANDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G         R   + G     ++++    ++ R +++N   +    ++   L    
Sbjct: 61  VREGC---GQAVVRARIVRGDRAALVEMQIVPGKANR-VRLNRAPVARARDVAGLLATVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
             P    +  G   ERRRFLD ++ A  PR      D++R+++ R+ LL
Sbjct: 117 FAPEDLALVKGDPAERRRFLDDLLVARAPRMAAVQSDYDRVLKQRSALL 165



 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
           TL+GPHR DL++    +     + S GE   + + + LA   L+       P+LLLD++ 
Sbjct: 349 TLVGPHRDDLLLSVNGRPAR-GYASHGESWSLALALRLASFELL-RADDREPVLLLDDVF 406

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMT 348
           A LD  +R  L  +V D   Q+ +T
Sbjct: 407 AELDTRRRARLAALVADA-EQVLVT 430


>gi|85057981|ref|YP_453683.1| recombination protein F [Sodalis glossinidius str. 'morsitans']
 gi|97180974|sp|Q2NX47|RECF_SODGM RecName: Full=DNA replication and repair protein recF
 gi|84778501|dbj|BAE73278.1| DNA metabolism protein RecF [Sodalis glossinidius str. 'morsitans']
          Length = 364

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 145/365 (39%), Gaps = 20/365 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN +   L   A     VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LMIRDFRNISVADLSLAADFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQSGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P F     R+E     A  +    +R+      ++I+      V EL + L +  + P  
Sbjct: 66  PEFV-LHGRIEAGNVDARATSVGLSRNRLGDSTVRIDGSDGHKVAELAQLLPMQLITPEG 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR F+D   F  +P       +  RL++ RN  L +     S    +   
Sbjct: 125 FTLLNGGPKYRRAFMDWGCFHNEPAFFTAWSNLRRLLKQRNAALRQ----VSRYQQLRVW 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF---CALKEE 246
             EL        + + N +S    +Y                 + + D SF      + +
Sbjct: 181 DQEL--------IPLANRISEWRADYSAAIAADITATCAQFLPEFRLDFSFQRGWDKESD 232

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFLAHAR 305
           + + L    + D     T  GPH++D  +    + + +    S G+ K+++  + LA   
Sbjct: 233 FGELLERQFERDRALTYTASGPHKADFRIRA--EGVPVEDILSRGQLKLLMCALRLAQGE 290

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAKF 364
            +++  G   + L+D+ ++ LD  +R  L   +    +Q+F++      + D  +E  K 
Sbjct: 291 FLTHRNGRRCLYLIDDFASELDTGRRRLLAERLKATHAQVFVSAVSADQIRDIPDEKGKM 350

Query: 365 MRISN 369
            ++  
Sbjct: 351 FKVEQ 355


>gi|319648522|ref|ZP_08002738.1| DNA replication and repair protein recF [Bacillus sp. BT1B_CT2]
 gi|317389601|gb|EFV70412.1| DNA replication and repair protein recF [Bacillus sp. BT1B_CT2]
          Length = 275

 Score = 66.2 bits (160), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 114/269 (42%), Gaps = 47/269 (17%)

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSW 182
           P    +  G    RRRFLD  +  + P +   +  +++++  RN  L    T    D + 
Sbjct: 23  PEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDQTM 82

Query: 183 CSSIEAQMAELGVKINIARVEMIN---------------ALSSLIMEYVQKENFPHIKLS 227
              +  Q+ E   K+ + R++ ++                L  L ++Y       H  L 
Sbjct: 83  LDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKY-------HTSLH 135

Query: 228 LTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           ++   D       + ++F  L+++  ++             +L GPHR D++  Y +   
Sbjct: 136 VSDSPDLSKMINSYQETFSKLRDKEIERGV-----------SLSGPHRDDVLF-YVNGRD 183

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              +GS G+Q+   + + LA   LI    G  PILLLD++ + LD+ +++ L   +    
Sbjct: 184 VQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-R 242

Query: 343 SQIFMTGTDKSVFD--SLNETAKFMRISN 369
            Q F+T T     D  +LNE A+  R+ N
Sbjct: 243 VQTFVTTTSVDGIDHKTLNE-AEIFRVEN 270


>gi|51316249|sp|Q6YI30|RECF_SODGL RecName: Full=DNA replication and repair protein recF
 gi|37359208|gb|AAN73890.1| DNA recombinase F [Sodalis glossinidius]
          Length = 364

 Score = 65.9 bits (159), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 145/365 (39%), Gaps = 20/365 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN +   L   A     VG NG GKT++LEAI  L  GR FR      V R   
Sbjct: 6   LMIRDFRNISVADLSLAADFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQSGRVIRHEQ 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P F     R+E     A  +    +R+      ++I+      V EL + L +  + P  
Sbjct: 66  PEFV-LHGRIEAGNVDARATSVGLSRNRLGDSTVRIDGSDGHKVAELAQLLPMQLITPEG 124

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + +G    RR F+D   F  +P       +  RL++ RN  L +     S    +   
Sbjct: 125 FTLLNGGPKYRRAFMDWGCFHNEPGFFTAWSNLRRLLKQRNAALRQ----VSRYQQLRVW 180

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF---CALKEE 246
             EL        + + N +S    +Y                 + + D SF      + +
Sbjct: 181 DQEL--------IPLANRISEWRADYSAAIAADITATCAQFLPEFRLDFSFQRGWDKESD 232

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFLAHAR 305
           + + L    + D     T  GPH++D  +    + + +    S G+ K+++  + LA   
Sbjct: 233 FGELLERQFERDRALTYTASGPHKADFRIRA--EGVPVEDILSRGQLKLLMCALRLAQGE 290

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAKF 364
            +++  G   + L+D+ ++ LD  +R  L   +    +Q+F++      + D  +E  K 
Sbjct: 291 FLTHRNGRRCLYLIDDFASELDTGRRRLLAERLKATHAQVFVSAVSADQIRDIPDEKGKM 350

Query: 365 MRISN 369
            ++  
Sbjct: 351 FKVEQ 355


>gi|157414178|ref|YP_001485044.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9215]
 gi|157388753|gb|ABV51458.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9215]
          Length = 297

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 130/265 (49%), Gaps = 20/265 (7%)

Query: 105 INDVVIRVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           +N+ +++   E+  ++R + +    +D + S  S  RR ++D++V  ++P +   +  F 
Sbjct: 28  VNESLLKKQSEIKNYIRSVCFCSNDIDIVRSEPSY-RRTWIDKVVSQLEPVYLDLISRFN 86

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           RL++ R+       F  +  S I   +    ++++I    +       +++      + H
Sbjct: 87  RLLKQRSHFWRSESFLKTQSSDI---VESFDIQMSIISTRIFRRRRRALLKIKPYIEYWH 143

Query: 224 IKLSLT------GFLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
             LS +       +L G  + S        + ++ A++L + R ++S++ +   GPHR D
Sbjct: 144 NHLSKSKEQIDINYLSGIKNISPEEEEEEVISKKIAEQLLNQRSIESLTGKCNFGPHRDD 203

Query: 273 LIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
             +++    +++  +GS+G+Q+  ++ + +A   L++ T   +PIL+LD++ A LD  ++
Sbjct: 204 --IEFLINNVSVRKYGSSGQQRTFILALKMAELDLLTKTLNVSPILILDDVLAELDLTRQ 261

Query: 332 NALFRIVTDIGSQIFMTGTDKSVFD 356
           N L   V    SQ F++ T    F+
Sbjct: 262 NLLLNSVGK-DSQCFISATHLDKFN 285


>gi|86147177|ref|ZP_01065493.1| recombination protein F [Vibrio sp. MED222]
 gi|85835061|gb|EAQ53203.1| recombination protein F [Vibrio sp. MED222]
          Length = 359

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 155/365 (42%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN  +  ++  +     +G NG GKT++LEA+  L  GR F+ +    + +   
Sbjct: 6   LIVKQFRNIEACDILPSSGFNFLIGANGSGKTSVLEAVYLLGHGRSFKSSLTGRIIQNEC 65

Query: 70  PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              F     V G    +D   + I +  + D +   ++I+    + + +L + L +  + 
Sbjct: 66  SELF-----VHGRFMTSDQFELPIGINKQRDGTTE-VKISGQTGQKLAQLAQVLPLQLIH 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P    + +     RR F+D  VF  +          +RL + RN LL T  ++     S 
Sbjct: 120 PEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATHYRE--LSY 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++A L   I+  R   +  L   + E +     P  ++ +  +     D        
Sbjct: 178 WDQELARLAESISQWRATYVEQLKE-VAEEICATFLPEFEIKINYYRGWDKDTP------ 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            YA+ L    + D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 231 -YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   +    +Q+F++  T   + D  +E ++ 
Sbjct: 289 HLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATQAQVFVSSITADQIADMHDENSRM 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|153826430|ref|ZP_01979097.1| recF protein [Vibrio cholerae MZO-2]
 gi|149739816|gb|EDM54011.1| recF protein [Vibrio cholerae MZO-2]
          Length = 311

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 123/258 (47%), Gaps = 15/258 (5%)

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL- 173
           +L + L +  + P    + +    +RR F+D  VF  +P        F+RL + RN LL 
Sbjct: 60  QLAQILPLQLIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLK 119

Query: 174 -TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             + Y + S+    + ++A L  +I+  R   +N L + + E + +   P   + L  + 
Sbjct: 120 SAQSYRELSYW---DQELARLAEQIDQWRESYVNQLKN-VAEQLCRTFLPEFDIDLKYYR 175

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
             + DQ + ++ E+  ++       D     T  GP+++DL +      +     S G+ 
Sbjct: 176 GWEKDQPYQSILEKNFER-------DQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQL 227

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TD 351
           K+++  + +A  + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+
Sbjct: 228 KLMVCALRVAQGQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITE 287

Query: 352 KSVFDSLNETAKFMRISN 369
             V D L+E++K   +++
Sbjct: 288 SQVADMLDESSKTFHVAH 305


>gi|254525401|ref|ZP_05137453.1| RecF protein [Prochlorococcus marinus str. MIT 9202]
 gi|221536825|gb|EEE39278.1| RecF protein [Prochlorococcus marinus str. MIT 9202]
          Length = 319

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/259 (21%), Positives = 127/259 (49%), Gaps = 20/259 (7%)

Query: 105 INDVVIRVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           +N+ +++   E+  ++R + +    +D + S  S  RR ++D++V  ++P +   +  F 
Sbjct: 50  VNESILKKQSEIKNYIRSVCFCSNDIDIVRSEPSY-RRTWIDKVVSQLEPVYLDLISRFN 108

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           RL++ R+       F  +  S I   +    ++++I    +       +++      + H
Sbjct: 109 RLLKQRSHFWRSESFLKTQSSDI---VESFDIQMSIISTRIFRRRRRALLKIKPYVEYWH 165

Query: 224 IKLSLT------GFLDGKFDQSFC-----ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
             LS +       +L G  + S        + ++ A++L + R ++S++ +   GPHR D
Sbjct: 166 NHLSKSKEQIDINYLSGIKNISLEEEEEEVISKKIAEQLLNQRSIESLTGKCNFGPHRDD 225

Query: 273 LIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
             +++    +++  + S+G+Q+  ++ + +A   L++ T   +PIL+LD++ A LD  ++
Sbjct: 226 --IEFLINNVSVRKYASSGQQRTFILALKMAELDLLTKTLNVSPILILDDVLAELDLTRQ 283

Query: 332 NALFRIVTDIGSQIFMTGT 350
           N L   V    SQ F++ T
Sbjct: 284 NLLLNSVGK-DSQCFISAT 301


>gi|115378326|ref|ZP_01465492.1| RecF protein [Stigmatella aurantiaca DW4/3-1]
 gi|115364680|gb|EAU63749.1| RecF protein [Stigmatella aurantiaca DW4/3-1]
          Length = 397

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 112/233 (48%), Gaps = 16/233 (6%)

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWCSSIEAQM 190
           +  G    RR FLDR VF   P   +   D+ R ++ RNRLL +G   ++++  + +  +
Sbjct: 39  VVKGGPEARRTFLDRAVFNRFPAFLKESRDYARALKNRNRLLRDGPAAEAAYLDAYDETL 98

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT----GFLDGKFDQSFCALKE- 245
           A  G ++ + R  ++  L+        +  F  I  ++     G+      Q F  + E 
Sbjct: 99  ARAGARVYVRRRALMAELAPRA-----QATFASIGRTVDPAAYGYHPAHLAQEFAEVDEV 153

Query: 246 ---EYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
              +   +   GR+   + R  T +GPH  D+ V    ++   A+ S G+Q+ +++G  +
Sbjct: 154 RLADALLEALAGRRRRDLERGFTSVGPHVDDVAVTLGGRSAR-AYASQGQQRALVLGWKI 212

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           A    +    GF P+LLLD++S+ LD ++   L   +   G+Q+F+T TD S+
Sbjct: 213 AEIENLHAALGFLPLLLLDDVSSELDPERNAYLMGYLAASGAQVFLTTTDASL 265


>gi|282877403|ref|ZP_06286226.1| DNA replication and repair protein RecF [Prevotella buccalis ATCC
           35310]
 gi|281300455|gb|EFA92801.1| DNA replication and repair protein RecF [Prevotella buccalis ATCC
           35310]
          Length = 405

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 152/367 (41%), Gaps = 39/367 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I  ++N     L F  +    +G NG GKTN+L+A+ +LS    F R+++  +  
Sbjct: 18  LKKISILNYKNIQVADLTFSPKLNCLIGHNGEGKTNLLDAVYYLS----FCRSAFNPIDS 73

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS--- 123
               +    F  ++G+  L D+       D+  + C        R      ++ R+S   
Sbjct: 74  -QVITHDRDFFVLDGLY-LNDMG------DEERIYCGMKRGTRKRFKRNQKEYKRLSQHI 125

Query: 124 ------WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEG 176
                 ++ P+   +  G S  RRRFLD +V  +D  +   +  + + +  RN LL  E 
Sbjct: 126 GLIPLIFVSPADTALIDGGSDARRRFLDMVVSQLDHSYIELLSRYNKALTQRNALLKAEQ 185

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
             DS+    +E +MA  G  I   R   +     +        +  H  +SL      + 
Sbjct: 186 EPDSALMEILEQEMATQGEAIYAKRDAFVREFIPVFQTIYDHVSGCHETVSLQYISHAQR 245

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL---IVDYCDKAITIAHGSTGEQK 293
                 ++ +        R  D     +L G HR DL   I  Y  K      GS G+ K
Sbjct: 246 GPLLDVIQRD--------RHKDRAVGYSLHGVHRDDLEMMIGGYQLK----REGSQGQNK 293

Query: 294 VVLVGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTD 351
             ++ + LA    +  T +   P+LLLD+I   LD  +   +  +V  D   QIF+T T+
Sbjct: 294 TYVLALKLAQFDFLKRTASSTTPLLLLDDIFDKLDAGRVERIVNMVAGDAYGQIFITDTN 353

Query: 352 KSVFDSL 358
           +   DS+
Sbjct: 354 RDHLDSI 360


>gi|313611862|gb|EFR86322.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL
           F2-208]
          Length = 278

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 114/267 (42%), Gaps = 43/267 (16%)

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---- 174
           +L +    P    +  G    RRRFL+  +  + P +   + +++R+++ RN+ L     
Sbjct: 18  NLNVVIFAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQM 77

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           +   D      +  Q A++ + +   R + I  L +                     +  
Sbjct: 78  KRKVDPILLDILTEQFADVAINLTKRRADFIQKLEAY-----------------AAPIHH 120

Query: 235 KFDQSFCALKEEY-AKKLFDG-----------RKMDSMSRR------TLIGPHRSDLIVD 276
           +  +    LK EY A    +G           +KM+S+ +R      TLIGPHR D +  
Sbjct: 121 QISRGLETLKIEYKASVTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLF- 179

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
           Y +       GS G+Q+   + I LA   LI   TG  P+LLLD++ + LD+ +++ L  
Sbjct: 180 YINGQNVQDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLG 239

Query: 337 IVTDIGSQIFMTGTDKSVFDSLNETAK 363
            + +   Q F+T T  S  D  +ET K
Sbjct: 240 AI-EGKVQTFVTTTSTSGID--HETLK 263


>gi|83814830|ref|YP_444220.1| DNA replication and repair protein RecF [Salinibacter ruber DSM
           13855]
 gi|97180944|sp|Q2S6G1|RECF_SALRD RecName: Full=DNA replication and repair protein recF
 gi|83756224|gb|ABC44337.1| DNA replication and repair protein RecF [Salinibacter ruber DSM
           13855]
          Length = 412

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/377 (21%), Positives = 155/377 (41%), Gaps = 22/377 (5%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FR +A           +  G NG GKTN+LEA+ +L   + F  +      R  +
Sbjct: 6   LRLRSFRAHAESEFDLAPSINLLYGANGAGKTNVLEAVHYLCLTKSFTASRDRYAVRKDA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P +F    R+ G      ++++L        + + +N   +  + ++   L +    P  
Sbjct: 66  P-YFEIEGRI-GQVREEPMTVRLAYVPGEG-KSIFVNGAELDRLADIVGTLPVVVFSPED 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE-- 187
             + +G   ERRRF++ ++      +   ++ + R  R RN +L   Y   S     E  
Sbjct: 123 YDLTAGGPSERRRFVNNILSQARSVYMETLMKYRRARRQRNEVL-RSYKKRSAPPPDELL 181

Query: 188 ----AQMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKLSLTGFLDGKFDQS 239
                ++  LG +I   R + + A +  + E  ++       P I+       D   D +
Sbjct: 182 APWTEKLVGLGSRIVHRRQQFLQAFADDLEEAYRRIDAVAERPTIEYDTIA--DLAPDAT 239

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             A+++E+   L   +  +     TL+GP R +L+    D  +   +GS G+ +   + +
Sbjct: 240 PDAIEDEFRAALARKQGQERDRGTTLVGPQRDELVFRLDDLEVR-RYGSQGQHRTFAMAL 298

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL 358
            LA    +       P+LLLD+    LD ++      ++ +D   Q  +T T +  F   
Sbjct: 299 KLAQYFYLQQRNDTEPLLLLDDAFGKLDAERTGVFLDLLRSDAVGQSLVTATRRGPF--- 355

Query: 359 NETAKFMRISNHQALCI 375
            E A     ++H+AL +
Sbjct: 356 -EPALNAEPASHRALQV 371


>gi|218708100|ref|YP_002415721.1| recombination protein F [Vibrio splendidus LGP32]
 gi|254790499|sp|B7VGI6|RECF_VIBSL RecName: Full=DNA replication and repair protein recF
 gi|218321119|emb|CAV17069.1| DNA replication and repair protein recF [Vibrio splendidus LGP32]
          Length = 359

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 154/365 (42%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN  +  +   +     +G NG GKT++LEA+  L  GR F+ +    + +   
Sbjct: 6   LIVKQFRNIEACDIQPSSGFNFLIGANGSGKTSVLEAVYLLGHGRSFKSSLSGRIIQNEC 65

Query: 70  PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              F     V G    +D   + I +  + D +   ++I+    + + +L + L +  + 
Sbjct: 66  SELF-----VHGRFMTSDQFELPIGINKQRDGTTE-VKISGQTGQKLAQLAQVLPLQLIH 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P    + +     RR F+D  VF  +          +RL + RN LL T  ++     S 
Sbjct: 120 PEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATHYRE--LSY 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++A L   I+  R   +  L   + E +     P  ++ +  +     D        
Sbjct: 178 WDQELARLAESISQWRATYVEQLKE-VAEEICATFLPEFEIKINYYRGWDKDTP------ 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            YA+ L    + D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 231 -YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   +    +Q+F++  T   + D  +E ++ 
Sbjct: 289 HLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATQAQVFVSSITADQIADMHDENSRM 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|886327|gb|AAB53143.1| single-stranded DNA binding protein [Mycobacterium leprae]
          Length = 223

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 18/222 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++   + +FR++  + L  +   T+F G NG GKTN++EA+ + +     R  +   + R
Sbjct: 3   VRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPLIR 62

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G+  +  ST    EG E     +I LE    R+ R  ++N  ++R + E+   LR    
Sbjct: 63  AGTIRAIVSTIVVNEGRE----CAIDLEIAAGRANRA-RLNRSLVRGMREVVGVLRAVLF 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----------E 175
            P    +  G    RRR+LD +     P       D+++++R R  LL           +
Sbjct: 118 APEDLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRTALLKSLAAARYRSDQ 177

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
           G  D+      + ++AE G ++  AR++++N L+  + +  Q
Sbjct: 178 GVLDT--LDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQ 217


>gi|332668536|ref|YP_004451543.1| DNA replication and repair protein RecF [Cellulomonas fimi ATCC
           484]
 gi|332337573|gb|AEE44156.1| DNA replication and repair protein RecF [Cellulomonas fimi ATCC
           484]
          Length = 423

 Score = 64.7 bits (156), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 3/169 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++++FR+YA + L  D   T  VG NG GKTN++EA+ +++     R  S A + R
Sbjct: 3   VAHLSLTDFRSYAQVELPLDPGITALVGPNGQGKTNLVEAVGYVATLGSHRVPSDAALVR 62

Query: 67  IGSPSFFSTFARVEGME-GLADIS-IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+         V  +E G    + +++E    ++ R         R  D L   LR   
Sbjct: 63  AGASRAVVRTRVVRELEPGRPRTTLVEVEVTPGKANRARVNGGSPGRARDVLGI-LRTVL 121

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
             P    +  G    RRRFLD ++  + PR+   + D+ER++R R+ LL
Sbjct: 122 FAPEDLALVKGDPDGRRRFLDDLLVQLVPRYAGTVQDYERVLRQRSALL 170


>gi|167470927|ref|ZP_02335631.1| recombination protein F [Yersinia pestis FV-1]
          Length = 221

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 72/166 (43%), Gaps = 4/166 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR      V R   
Sbjct: 6   LLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRVIRHEC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F     RV+  E  A + +    + D  VR   I+      V EL + L +  + P  
Sbjct: 66  AEFV-LHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQLITPEG 121

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
             + +G    RR FLD   F  +P       + +RL++ RN  L +
Sbjct: 122 FTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ 167


>gi|86610145|ref|YP_478907.1| recombination protein F [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|97181049|sp|Q2JIB8|RECF_SYNJB RecName: Full=DNA replication and repair protein recF
 gi|86558687|gb|ABD03644.1| DNA replication and repair protein RecF [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 380

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 136/306 (44%), Gaps = 30/306 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  FRNY    + FDA  TI VG+N  GKTN+LEA+  L+  R  RRAS      
Sbjct: 3   LRSLHLRHFRNYRDQEITFDAPKTILVGENAQGKTNLLEAVELLATLRS-RRASRDRELV 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                     A VE +    ++ ++L +   RS++      V+ R  D L +   +    
Sbjct: 62  YQEERQAQIAATVERLGVAHELVMELRSSGRRSLKV--DGQVLRRQADFLGQVNAV---- 115

Query: 127 PSMDRIFSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
                +FS L +E        RR +LD ++  ++P +   +  + +++R RN LL +   
Sbjct: 116 -----VFSSLDLELVRGGPEARRNWLDGVLLQLEPAYLGLVEQYRQILRQRNALLKQDPA 170

Query: 179 DS----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
            +    S     +AQ+A  G +I   R  ++  L  L   + +  +     L+LT     
Sbjct: 171 AAGDKFSQMDFWDAQLATTGSRIMRRRARLLQRLEPLAAHWHRVISGGRETLTLTYRPQV 230

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSR---RTLIGPHRSDLIVDYCDKAITI-AHGSTG 290
                  + +   A+ L + R   +       +L+GPHR +  V+ C   +   A+GS G
Sbjct: 231 PLPDPQASPEVIQAQFLAEIRAKAAAEHSLGSSLVGPHRDE--VELCINGVAARAYGSQG 288

Query: 291 EQKVVL 296
           +Q+ ++
Sbjct: 289 QQRTLV 294


>gi|328946933|ref|YP_004364270.1| DNA replication and repair protein RecF [Treponema succinifaciens
           DSM 2489]
 gi|328447257|gb|AEB12973.1| DNA replication and repair protein RecF [Treponema succinifaciens
           DSM 2489]
          Length = 373

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 161/364 (44%), Gaps = 42/364 (11%)

Query: 7   IKFLNISE--FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + FL++S   FRN  +  +   ++   FVG NG GK+N+LE++ + + G  FR    ++V
Sbjct: 1   MPFLSLSPYNFRNLCNENIDLSSKEIYFVGKNGQGKSNLLESLYYSAYGSSFRTHVDSEV 60

Query: 65  TRIGSP--SFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVD-ELNKHL 120
            +      S    F    G     + I  +   + ++  + L     +I  +   L  H 
Sbjct: 61  IKKNESEMSLRCLFREENGTSHTTSIILKEKLKKIEKDGKILHDRKELINTMPCVLYSHE 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            + + V S +R        RR F+D+ +   D  +   M  ++R+++ RN  L E ++D 
Sbjct: 121 DLDFAVGSPER--------RRFFIDQSLSMYDVLYIDIMRKYKRILKNRNLSLKEKHYD- 171

Query: 181 SWCSSIEAQMAELGVKINIAR--------------VEMINALSSLIMEYVQKENFPHIKL 226
               + + Q+A+ G++I   R               E +  +S + ++Y+     P  K 
Sbjct: 172 -LLETYDFQLAQNGLEIQKKRKDAVFSFNQIFGKLYEQVTGISGVSIKYI-----PSWKN 225

Query: 227 SLTGFLDGKFDQSFCALKE--EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
                    FD++  ++    +Y  K+   R+ + +   ++ GPHR D IV   +    +
Sbjct: 226 KSDNLNSPFFDRNIPSVDYVVDYLSKI---REQEKIIGSSISGPHR-DKIVFEKEGIPFV 281

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
              STG+++++ + +    A      T   P+LL+D++   LD +KR  +  ++ +   Q
Sbjct: 282 PTASTGQKRLIALILRTGQAVFYKQITSRKPVLLMDDVLLELDPEKRQKVTSLLPEY-DQ 340

Query: 345 IFMT 348
           +F T
Sbjct: 341 LFCT 344


>gi|289642468|ref|ZP_06474613.1| DNA replication and repair protein RecF [Frankia symbiont of
           Datisca glomerata]
 gi|289507727|gb|EFD28681.1| DNA replication and repair protein RecF [Frankia symbiont of
           Datisca glomerata]
          Length = 469

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 6/170 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++ +FR+Y +L L+       FVG NG GKTN+LEA+ +L+     R AS A +
Sbjct: 1   MRLTHLSLVDFRSYPALDLLLAPGVNTFVGSNGQGKTNLLEAVGYLATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+ S  +  AR+   +  A + I+ +  R +R+    ++N   +    ++   L + 
Sbjct: 61  VREGATS-AAVRARIARGDRAALVEIEIIPGRANRA----RLNRAPLARSHDVLGLLVMV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           +  P    +  G    RRRFLD ++ A  PR    + D+++++R R+ LL
Sbjct: 116 FFAPEDLALVKGDPAGRRRFLDDLLVARTPRLAGVLADYDKVLRQRSTLL 165



 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
           TL+GPHR +L++    +     + S GE   + + + LA   L+ +     P+LLLD++ 
Sbjct: 361 TLVGPHRDELLLSISGRPAR-GYASHGESWSLALALKLASFELLQDDQ-REPVLLLDDVF 418

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           A LD  +R+ L  ++     Q+ +T   ++   +    A+F
Sbjct: 419 AELDTHRRDRLAELIRS-AEQVLVTAAVEADVPAALAGARF 458


>gi|297243222|ref|ZP_06927157.1| RecF pathway recombinational DNA repair ATPase [Gardnerella
           vaginalis AMD]
 gi|296888756|gb|EFH27493.1| RecF pathway recombinational DNA repair ATPase [Gardnerella
           vaginalis AMD]
          Length = 433

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 163/379 (43%), Gaps = 57/379 (15%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY---------ADVT 65
           FR++  +   F     +  G+NG+GKTNI+EA+     G   R +S            + 
Sbjct: 11  FRSWNHIICDFKPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPLIKKGYEKSII 70

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL----------QINDVVIRVVDE 115
           RI + +    + + E    L +IS  LE+  D++   +           IN      V +
Sbjct: 71  RINTINNEINYKKDETNTDLNNIS-SLESNLDKTTYEIDLYLKGSNRAHINSGKALYVKD 129

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           +   L I    P    +  G    RR F+D+    + P + + + +F+ + + R  LL +
Sbjct: 130 IIGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLVPNYVQILQEFKHISKQRAALL-K 188

Query: 176 GYFDSSW------CSSIE---AQMAELGVKINIARVEMINALS----SLIMEYVQKENFP 222
              D S+       S +E    +  E G+ +  AR E +  ++    ++I  +  +EN  
Sbjct: 189 NIRDYSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVQIINKYFKNIIKSFTNEENTG 248

Query: 223 HIKLSLTGFLDGKFDQS-----------FCALKEEYAKKLFDGRKMDSMSRR-TLIGPHR 270
            I   +  F +  F+++           F  + E + +++++G     ++R   LIGPHR
Sbjct: 249 II--YVPSFEEVLFEKNSEENVENKNELFSKISEHF-QRIYEGE----LARGCNLIGPHR 301

Query: 271 SDLIVDYCDKAITIAH-GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
            D  +D+    I+     S GE   + +   +A  + +       PI++LD++ A LDE+
Sbjct: 302 DD--IDFVINNISAKDFASNGESWTIAIASKMALCKALEEKNNNKPIVILDDVFAQLDEN 359

Query: 330 KRNALFRIVTDIGSQIFMT 348
           +R  +     + G Q+F+T
Sbjct: 360 RRIRILNFALNQG-QVFIT 377


>gi|91070222|gb|ABE11142.1| putative DNA repair and genetic recombination protein RecF
           [uncultured Prochlorococcus marinus clone HF10-11H11]
          Length = 297

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 131/266 (49%), Gaps = 22/266 (8%)

Query: 105 INDVVIRVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           +N+ +++   E+  ++R + +    +D + S  S  RR ++D++V  ++P +   +  F 
Sbjct: 28  VNESILKKQSEIKNYIRSVCFCSNDIDIVRSEPSY-RRTWIDKVVSQLEPVYLDLISRFN 86

Query: 164 RLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           RL++ R+    +E +  +     +E+      ++++I    +       +++      + 
Sbjct: 87  RLLKQRSHFWRSESFLKTQSTDIVES----FDIQMSIISTRIFRRRRRALLKIKPYVEYW 142

Query: 223 HIKLSLT------GFLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           H  LS +       +L G  + S        + ++ A++L + R +++++ +   GPHR 
Sbjct: 143 HNHLSKSQEQIDINYLSGIQNISPEEEEEEIISKKIAEQLLNQRSIEALTGKCNFGPHRD 202

Query: 272 DLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
           D  +++    +++  +GS+G+Q+  ++ + +A   L++ T    PIL+LD++ A LD  +
Sbjct: 203 D--IEFLINNVSVRKYGSSGQQRTFILALKMAELDLLTKTLNVPPILILDDVLAELDLTR 260

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFD 356
           +N L   V    SQ F++ T    F+
Sbjct: 261 QNLLLNSVGK-DSQCFISATHLDKFN 285


>gi|84394123|ref|ZP_00992857.1| recombination protein F [Vibrio splendidus 12B01]
 gi|84375269|gb|EAP92182.1| recombination protein F [Vibrio splendidus 12B01]
          Length = 359

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 75/365 (20%), Positives = 153/365 (41%), Gaps = 22/365 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN  +  +   +     +G NG GKT++LEA+  L  GR F+ +    + +   
Sbjct: 6   LIVKQFRNIEACDIQPSSGFNFLIGANGSGKTSVLEAVYLLGHGRSFKSSLTGRIIQNEC 65

Query: 70  PSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
              F    F   +  E    + I +  + D +   ++I+    + + +L + L +  + P
Sbjct: 66  SELFVHGRFLTSDQFE----LPIGINKQRDGTTE-VKISGQTGQKLAQLAQVLPLQLIHP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSS 185
               + +     RR F+D  VF  +          +RL + RN LL     Y + S+   
Sbjct: 121 EGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATNYRELSYW-- 178

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++A L   I+  R   +  L   + E +     P  ++ +  +     D        
Sbjct: 179 -DQELARLAESISQWRATYVEQLKE-VAEEICATFLPEFEIKINYYRGWDKDTP------ 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            YA+ L    + D     T  GP+++DL +      +     S G+ K+++  + +A  +
Sbjct: 231 -YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQGQ 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  TG   I L+D+ ++ LD  +R  L   +    +Q+F++  T   + D  +E ++ 
Sbjct: 289 HLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATQAQVFVSSITADQIADMHDENSRM 348

Query: 365 MRISN 369
             + +
Sbjct: 349 FHVEH 353


>gi|294505883|ref|YP_003569941.1| DNA replication and repair protein recF [Salinibacter ruber M8]
 gi|294342211|emb|CBH22989.1| DNA replication and repair protein recF [Salinibacter ruber M8]
          Length = 412

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 156/379 (41%), Gaps = 26/379 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FR +A           +  G NG GKTN+LEA+ +L   + F  +      R  +
Sbjct: 6   LRLRSFRAHAESEFDLAPSINLLYGANGAGKTNVLEAVHYLCLTKSFTASRDRYAVRKDA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
           P +F    R+ G      ++++L        + + +N   +  + ++   L +    P  
Sbjct: 66  P-YFEIEGRI-GQVREEPMTVRLAYVPGEG-KSIFVNGAELDRLADIVGTLPVVVFSPED 122

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE-- 187
             + +G   ERRRF++ ++      +   ++ + R  R RN +L   Y   S     E  
Sbjct: 123 YDLTAGGPSERRRFVNNILSQARSVYMETLMKYRRARRQRNEVL-RSYKKRSAPPPDELL 181

Query: 188 ----AQMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKLSLTGFL--DGKFD 237
                ++  LG +I   R + + A +  + E  ++       P I+      L  D   D
Sbjct: 182 APWTEKLVGLGSRIVHRRQQFLQAFADDLEEAYRRIDAVAERPTIEYDTIADLAPDATPD 241

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
               A +   A+K   G++ D  +  TL+GP R +L+    D  +   +GS G+ +   +
Sbjct: 242 AIEDAFRAALARK--QGQERDRGT--TLVGPQRDELVFRLDDLEVR-RYGSQGQHRTFAM 296

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFD 356
            + LA    +       P+LLLD+    LD ++      ++ +D   Q  +T T +  F 
Sbjct: 297 ALKLAQYFYLQQRNDTEPLLLLDDAFGKLDAERTGVFLDLLRSDAVGQSLVTATRRGPF- 355

Query: 357 SLNETAKFMRISNHQALCI 375
              E A     ++H+AL +
Sbjct: 356 ---EPALNAEPASHRALQV 371


>gi|229083318|ref|ZP_04215680.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44]
 gi|228699993|gb|EEL52616.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44]
          Length = 245

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 9/205 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R   
Sbjct: 6   LQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIR--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             +   + +++G     + S+ LE    +  +  ++N +  + + +    + +    P  
Sbjct: 63  --WDEDYGKIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SWCSS 185
             +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +S    +    
Sbjct: 121 LNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEEAMLDV 180

Query: 186 IEAQMAELGVKINIARVEMINALSS 210
              Q+ E G KI   R E ++ L  
Sbjct: 181 FTIQLIEHGAKILRKRFEFLHLLQE 205


>gi|123969312|ref|YP_001010170.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. AS9601]
 gi|123199422|gb|ABM71063.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. AS9601]
          Length = 297

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 130/270 (48%), Gaps = 23/270 (8%)

Query: 105 INDVVIRVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           +N+ +++   E+  ++R + +    +D + S  S  RR ++D++V  ++P +   +  F 
Sbjct: 28  VNETILKKQSEIKNYIRSVCFCSNDIDIVRSEPSY-RRIWIDKVVSQLEPVYLDLISRFN 86

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R+++ R+       F  +  S I   +    ++++I    +       +++      + H
Sbjct: 87  RILKQRSHFWRSESFLKTQSSDI---VESFDIQMSIISTRIFRRRRRALLKIKPYVEYWH 143

Query: 224 IKLSLT------GFLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
             LS +       +L G  + S        + ++  ++L + R +++++ +   GPHR D
Sbjct: 144 NHLSKSKEQIDINYLSGIQNISPEEEEEEVISKKIVEQLLNQRSIEALTGKCNFGPHRDD 203

Query: 273 LIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
             V++    +++  +GS+G+Q+  ++ + +A   L++ T    PIL+LD++ A LD  ++
Sbjct: 204 --VEFLINNVSVRKYGSSGQQRTFILALKMAELDLLTKTLNVPPILILDDVLAELDLTRQ 261

Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           N L   V    SQ F++ T     D  N++
Sbjct: 262 NLLLNSVGK-DSQCFISATH---LDKFNQS 287


>gi|126697102|ref|YP_001091988.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9301]
 gi|126544145|gb|ABO18387.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9301]
          Length = 265

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/230 (21%), Positives = 112/230 (48%), Gaps = 20/230 (8%)

Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKIN 198
           RR ++D++V  ++P +   +  F RL++ R+    +E +  +     +E+      ++++
Sbjct: 31  RRTWIDKVVSQLEPVYLDLISRFNRLLKQRSHFWRSESFLKTQSTDIVES----FDIQMS 86

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLT------GFLDGKFDQS-----FCALKEEY 247
           I    +       +++      + H  LS +       +L G  + S        + ++ 
Sbjct: 87  IISTRIFRRRRRALLKIKPYVEYWHNHLSKSQEQIDINYLSGIQNISPEEEEEEVISKKI 146

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARL 306
           A +L + R +++++ +   GPHR D  +++    +++  +GS+G+Q+  ++ + +A   L
Sbjct: 147 ADQLLNQRSIEALTGKCNFGPHRDD--IEFLINNVSVRKYGSSGQQRTFILALKMAELDL 204

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           ++ T    PIL+LD++ A LD  ++N L   V    SQ F++ T    F+
Sbjct: 205 LNKTLNIPPILILDDVLAELDLTRQNLLLNSVGK-DSQCFISATHLDKFN 253


>gi|326772841|ref|ZP_08232125.1| RecF protein [Actinomyces viscosus C505]
 gi|326637473|gb|EGE38375.1| RecF protein [Actinomyces viscosus C505]
          Length = 405

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 164/400 (41%), Gaps = 58/400 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++ +FR+Y SL L  +   + FVG NG GKTN++EAI +L+     R  +   + R
Sbjct: 3   VSDLSLDDFRSYRSLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTALVR 62

Query: 67  IGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             +P          R   + G     +++E    ++ R  ++N    R  D L   LR  
Sbjct: 63  RAAPGQAQPAGAVVRARAVHGERPSVLEIEIIAGKANRA-RLNRGGCRPRDLLGV-LRAV 120

Query: 124 WLVP---SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
              P   S+ R   G+   RR FLD +V  + P       + ++++  R  LL       
Sbjct: 121 VFAPEDLSLVRAEPGV---RRGFLDDLVVTLRPGLAGVRAEHDKILAQRASLLKSA---R 174

Query: 181 SWCSSIEAQMAELGV---------------KINIAR---------VEMINAL-------- 208
           +  SSI + ++ L V               ++++ R          E ++          
Sbjct: 175 AARSSISSMLSTLEVWDAQLAAAAARLIAARVDVVRRLRPWVASAYETVSGTSGQRSRAQ 234

Query: 209 ----SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
               SSL+      E  PH + +     +   D++  A + E A      R++D  +   
Sbjct: 235 LAYRSSLLTHEGHPEPDPHDESAWLAGEETLLDEAALAARLESAMGELHAREIDRGA--N 292

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFA----PILLL 319
           L+G HR DL + +          S GEQ  + + + LA   ++ ++   +     P+L+L
Sbjct: 293 LVGAHRDDLSL-FLTGLPARGFASHGEQWSLALALRLASYDMLRTDIDAYGGDGEPVLIL 351

Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
           D++ A LDE +R AL ++V      +     D  V   L+
Sbjct: 352 DDVFASLDEQRRRALAQMVAGAQQVLLTAAVDDDVPAELS 391


>gi|227876544|ref|ZP_03994655.1| recombination protein F [Mobiluncus mulieris ATCC 35243]
 gi|227842858|gb|EEJ53056.1| recombination protein F [Mobiluncus mulieris ATCC 35243]
          Length = 436

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 154/382 (40%), Gaps = 49/382 (12%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FR+Y  L +  +    +F+G NG GKTN++EA+++L+     R  + A +   G+
Sbjct: 6   LALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAALIFRGT 65

Query: 70  PSFFSTF----ARVEG---MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           P          ARV      E  +D+ +++E    ++ R + +N   +R  D L  HL  
Sbjct: 66  PEETPHAGIIRARVSPGITPEPRSDL-LEIEIVSGKANRAM-LNRHKVRPRD-LVGHLST 122

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GY 177
               P    + SG    RR FLDR+   + P       D  + +R R   L +       
Sbjct: 123 VLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVARRHEV 182

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQ-KENFPHI----------- 224
            D       +  +  L  K+  +R ++   L  L+   Y Q     PH            
Sbjct: 183 LDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQAPHESETNPNEATPT 242

Query: 225 -------------KLSLTGFLDGKFDQ---SFCALKEEYAKKLFDGRKMDSMSRR-TLIG 267
                         +S T  +D    Q   +  A+ E   +     R +D   R   L G
Sbjct: 243 AENPVTARMTYRDNVSKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRGVNLCG 302

Query: 268 PHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
            HR DL  ++C     +  + S GE     + + LA   L+    G AP+LLLD++ A L
Sbjct: 303 THRDDL--EFCLHDFPVKGYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDVFAEL 360

Query: 327 DEDKRNALFRIVTDIGSQIFMT 348
           D  +R A+   + +   Q+++T
Sbjct: 361 DSHRRAAILGAI-EAADQVWIT 381


>gi|306817505|ref|ZP_07451249.1| recombination protein F [Mobiluncus mulieris ATCC 35239]
 gi|304649729|gb|EFM47010.1| recombination protein F [Mobiluncus mulieris ATCC 35239]
          Length = 436

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 154/382 (40%), Gaps = 49/382 (12%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FR+Y  L +  +    +F+G NG GKTN++EA+++L+     R  + A +   G+
Sbjct: 6   LALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAALIFRGN 65

Query: 70  PSFFSTF----ARVEG---MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           P          ARV      E  +D+ +++E    ++ R + +N   +R  D L  HL  
Sbjct: 66  PEETPHAGIIRARVSPGITPEPRSDL-LEIEIVSGKANRAM-LNRHKVRPRD-LVGHLST 122

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GY 177
               P    + SG    RR FLDR+   + P       D  + +R R   L +       
Sbjct: 123 VLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVARRHEV 182

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQ-KENFPHI----------- 224
            D       +  +  L  K+  +R ++   L  L+   Y Q     PH            
Sbjct: 183 LDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQAPHESETNPNEATPT 242

Query: 225 -------------KLSLTGFLDGKFDQ---SFCALKEEYAKKLFDGRKMDSMSRR-TLIG 267
                         +S T  +D    Q   +  A+ E   +     R +D   R   L G
Sbjct: 243 AENPATARMTYRDNISKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRGVNLCG 302

Query: 268 PHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
            HR DL  ++C     +  + S GE     + + LA   L+    G AP+LLLD++ A L
Sbjct: 303 THRDDL--EFCLHDFPVKGYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDVFAEL 360

Query: 327 DEDKRNALFRIVTDIGSQIFMT 348
           D  +R A+   + +   Q+++T
Sbjct: 361 DSHRRAAILGAI-EAADQVWIT 381


>gi|329894832|ref|ZP_08270632.1| DNA recombination and repair protein RecF [gamma proteobacterium
           IMCC3088]
 gi|328922726|gb|EGG30060.1| DNA recombination and repair protein RecF [gamma proteobacterium
           IMCC3088]
          Length = 428

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 170/406 (41%), Gaps = 78/406 (19%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD--VTRI 67
           + I+  RN A   +   +   +F+GDNGVGKT++LEAI  L  GR FR+       + R 
Sbjct: 5   IQIANLRNIAMQEIGDLSPVNVFLGDNGVGKTSVLEAIHTLGYGRSFRKQGGQKDALVRY 64

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE-LNKHLRISWLV 126
           G          V G  G      +    +   +      D+ I++  E L +   +++ +
Sbjct: 65  GCERLVVFGESVMGGSGSVRGDGQALGVERMGLSRAANGDIQIKINGEKLQRLSEMAFRL 124

Query: 127 PSMD------RIFSGLSMERRRFLDRMVFAIDPRHR-----------------RRMIDFE 163
           P++        + +G + ERRR+LD  VF ++   R                 RR+ +  
Sbjct: 125 PTIAVNSDTFDLLTGGAAERRRYLDWAVFHVEHGFRDVSKRYANALQQRNSILRRIANQM 184

Query: 164 RLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           RL   +N  +     + S+W  ++ A    LG ++   R      L  L  + +++    
Sbjct: 185 RLANPKNSSIDHDPHELSTWTQAVSA----LGAQVGEYREAQFLVLRDLFEDMLRELGGG 240

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIV----DY 277
            + + L G+  G + Q         A+ L  G+  D MSR  T  GPHR+D+ V    D 
Sbjct: 241 ALGVKL-GYRSG-WGQGVA-----LAEALEQGQISD-MSRGFTQFGPHRADIQVVVGKDV 292

Query: 278 CDKAITIAHG--STGEQKVVLVGIFLAHAR--LISNTTG-------------------FA 314
             +A  +A    S G+ K+V++ + LA  R  L + + G                    A
Sbjct: 293 AGQA-RLARDVLSRGQLKLVVLAMKLAQVRFFLHAGSAGTLASKGARTEAGRDPQVQALA 351

Query: 315 PI------LLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGT 350
           P       +LLD+I+A  D  +  AL R++ ++    G Q+F T T
Sbjct: 352 PAAGNTLSVLLDDIAAEFDRPRVVALGRLLAEMIMQGGVQVFATST 397


>gi|324999885|ref|ZP_08120997.1| recombination protein F [Pseudonocardia sp. P1]
          Length = 398

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 4/167 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++   +++FR++    L  D   T+ VG NGVGKTN++E I +L+     R +S   + R
Sbjct: 3   LRRFAVTDFRSWPEAELELDPGVTVLVGSNGVGKTNLVEGIGYLASLGSHRVSSDTPLIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+        R E       + ++LE    +  R       V R  D L   LR     
Sbjct: 63  RGA---EQAVLRGEVHHHGRKLGVELEINSGKQNRARVNRSPVSRPRDVLGI-LRSVLFA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           P    +  G   ERRRFLD ++ A  PR+     D+E+++R R+ LL
Sbjct: 119 PEDLALVRGDPSERRRFLDELLVARFPRYAGVRSDYEKVLRQRSALL 165



 Score = 43.1 bits (100), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
           L+GPHR +L +   D      + S GE     + + LA  RL+       P+L+LD++ A
Sbjct: 283 LVGPHRDELDLALGDGPAK-GYASHGESWAFALALRLASYRLL-QADDVEPVLVLDDVFA 340

Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGT 350
            LD  +R AL  +V D   Q+ +T  
Sbjct: 341 ELDSARRRALAGLVAD-AEQVLVTAA 365


>gi|23465220|ref|NP_695823.1| recombination protein RecF [Bifidobacterium longum NCC2705]
 gi|189440296|ref|YP_001955377.1| recombinational DNA repair ATPase [Bifidobacterium longum DJO10A]
 gi|322690196|ref|YP_004219766.1| recombination protein RecF [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|23325848|gb|AAN24459.1| recombination protein RecF [Bifidobacterium longum NCC2705]
 gi|189428731|gb|ACD98879.1| Recombinational DNA repair ATPase [Bifidobacterium longum DJO10A]
 gi|320455052|dbj|BAJ65674.1| recombination protein RecF [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 395

 Score = 62.4 bits (150), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 135/330 (40%), Gaps = 44/330 (13%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG--SPSFFSTFARVEGMEGLADI 88
           I  G NG+GKTN++EA+  LS G   R +S   +   G  + +  +  A   G     + 
Sbjct: 10  ILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPLIERGQTTATIRANVADDAGQTTTYEA 69

Query: 89  SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
           SI    R     R    + + +R  D + K   +S+  P   R+ SG    RR  +++  
Sbjct: 70  SI--HARGANRARINSGSSLYLR--DIIGKIPSVSF-TPEDQRLVSGDPGARRTMMNQAA 124

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTE-------GYFDSSWCSSIE---AQMAELGVKIN 198
             ++P + + +  F R+ + R  LL +       G    +  S +E    Q  E GV + 
Sbjct: 125 ALLEPGYMQTLQQFTRIAKQRATLLKQLNANVNNGQPMDAVLSGLEIWTGQFIEAGVALT 184

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-------------KFDQSFCALKE 245
             R  +I  L+         E F  I   L G  +               FD     + E
Sbjct: 185 RMRAHVIGLLA---------EPFAAIYADLAGAGEQVTLTYAPSFDEVLMFDDPHPQISE 235

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            + ++++ G     ++   LIGP R D+ ++           S GE   + + + +A   
Sbjct: 236 HF-QRIYPGEVARGVN---LIGPQRDDMNLELGGIPAR-EFASNGEMWTMALALKMALFE 290

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALF 335
           ++ +  G  PI++LD++ A LD+ +R  + 
Sbjct: 291 IVRDRLGLQPIVILDDVFAQLDDSRRTQIL 320


>gi|282852317|ref|ZP_06261659.1| DNA replication and repair protein RecF [Lactobacillus gasseri
           224-1]
 gi|282556059|gb|EFB61679.1| DNA replication and repair protein RecF [Lactobacillus gasseri
           224-1]
          Length = 177

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           + +FRN+  L+  FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++ R G   
Sbjct: 8   LKDFRNFKELKTDFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKELIRFG--- 64

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             S FA ++G    + + ++L+ R   + +   +N +  + +      +      P    
Sbjct: 65  --SKFAGLQGRVHKSQLQVELKLRLTANGKKAWVNRLEQKKLSAYVGQMNAILFSPEDLA 122

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           +  G    RRRF+D     I+  +      + ++++ RN  L +
Sbjct: 123 LVKGAPSVRRRFMDLEFGQINSEYLYFSSQYRQVLQQRNNYLKQ 166


>gi|307699932|ref|ZP_07636983.1| putative DNA replication and repair protein RecF [Mobiluncus
           mulieris FB024-16]
 gi|307614970|gb|EFN94188.1| putative DNA replication and repair protein RecF [Mobiluncus
           mulieris FB024-16]
          Length = 436

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 153/382 (40%), Gaps = 49/382 (12%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FR+Y  L +  +    +F+G NG GKTN++EA+++L+     R  + A +   G+
Sbjct: 6   LALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAALIFRGN 65

Query: 70  PSFFSTF----ARVEG---MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           P          ARV      E  +D+ +++E    +  R + +N   +R  D L  HL  
Sbjct: 66  PEETPHAGIIRARVSPGITPEPRSDL-LEIEIVSGKPNRAM-LNRHKVRPRD-LVGHLST 122

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GY 177
               P    + SG    RR FLDR+   + P       D  + +R R   L +       
Sbjct: 123 VLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVARRHEV 182

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQ-KENFPHI----------- 224
            D       +  +  L  K+  +R ++   L  L+   Y Q     PH            
Sbjct: 183 LDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQAPHESETNPNEATPT 242

Query: 225 -------------KLSLTGFLDGKFDQ---SFCALKEEYAKKLFDGRKMDSMSRR-TLIG 267
                         +S T  +D    Q   +  A+ E   +     R +D   R   L G
Sbjct: 243 AENPVTARMTYRDNVSKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRGVNLCG 302

Query: 268 PHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
            HR DL  ++C     +  + S GE     + + LA   L+    G AP+LLLD++ A L
Sbjct: 303 THRDDL--EFCLHDFPVKGYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDVFAEL 360

Query: 327 DEDKRNALFRIVTDIGSQIFMT 348
           D  +R A+   + +   Q+++T
Sbjct: 361 DSHRRAAILGAI-EAADQVWIT 381


>gi|78185501|ref|YP_377936.1| recombination protein F [Synechococcus sp. CC9902]
 gi|78169795|gb|ABB26892.1| DNA replication and repair protein RecF [Synechococcus sp. CC9902]
          Length = 353

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 129/293 (44%), Gaps = 18/293 (6%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
           + +G NG+GK+N+LEA+  L   R  R +   D+ +  SP      A +    G  D  +
Sbjct: 9   LVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWDSP-----MALLRADVGDGD-RL 62

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           +LE R     +  +   V+ R +D +     I +    +D +  G    RR++LDR+V  
Sbjct: 63  ELELRRRGGRQARRNGKVLDRQLDLIGPLRCIGFSALDLD-LVRGEPALRRQWLDRVVLQ 121

Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI----EAQMAELGVKINIARVEMIN 206
           ++P +   +  + RL+R R++L      +++  S +    + QMA +  +I+  R   + 
Sbjct: 122 LEPVYADLISRYNRLLRQRSQLWRSHRLNTAERSGLLDAFDVQMALISTRIHRRRRRALQ 181

Query: 207 ALSSLIMEYVQK----ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            L  +   +       +    +       LDG+  +    L  E  ++L D R+ +    
Sbjct: 182 RLEPIAQHWQSHLSSGKELLQLHYQPGSRLDGEEAEEPWRLAIE--EQLRDQREDEERLG 239

Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
              IGPHR D I     +      GS G+Q+ +++G+ LA   L+    G  P
Sbjct: 240 NCRIGPHR-DEINMVLGETPARRFGSAGQQRSLVLGLKLAELELVKELCGEPP 291


>gi|33862129|ref|NP_893690.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|33634347|emb|CAE20032.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
          Length = 323

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/274 (22%), Positives = 125/274 (45%), Gaps = 25/274 (9%)

Query: 98  RSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
           +  + + +ND +++   E+  ++R      +   I       RR ++D++V  ++P +  
Sbjct: 48  KGAKKIYVNDSLLKKQTEIQNYIRSVCFCSNDIYIVKSEPGFRRSWIDKVVSQLEPVYVE 107

Query: 158 RMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
            +  F RL++ R        F     S    S + QM+ +  +I   R   +    S I 
Sbjct: 108 LIHRFNRLLKQRTHFWRSESFQKDIYSEVIESFDIQMSLISTRIFRRRRRAL----SKIK 163

Query: 214 EYVQKENFPHIKLS----------LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
            YV+   + H  LS          L+G  +   ++    + ++  ++L   R +++++ +
Sbjct: 164 PYVE---YWHNHLSKSKEQIGINYLSGLENINQEEEEEVISKKILEQLQKQRPLEAVTGK 220

Query: 264 TLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
              GPHR D  +++    I+I  +GS+G+Q+  ++ + +A   L+ N     PIL+LD++
Sbjct: 221 CNFGPHRDD--IEFLINNISIRKYGSSGQQRTFILALKMAELDLLRNMIDLPPILILDDV 278

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
            A LD  ++N L   V    SQ  ++ T    F+
Sbjct: 279 LAELDITRQNLLLNSVGK-DSQCLISATHLDKFN 311


>gi|110832864|ref|YP_691723.1| DNA replication and repair protein RecF [Alcanivorax borkumensis
           SK2]
 gi|110645975|emb|CAL15451.1| DNA replication and repair protein RecF [Alcanivorax borkumensis
           SK2]
          Length = 332

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 135/308 (43%), Gaps = 36/308 (11%)

Query: 74  STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133
           + +A V G++ +  I I+   R    +  ++++    + + E+   L +  L P+   + 
Sbjct: 32  TLYAEVVGVQDVHRIGIR---RTPGGIDAIKLDGQTPKALSEVAVLLPVLALHPTSVELV 88

Query: 134 SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
            G S  RRRF+D  +F ++ +           ++ RN LL  G  +         Q+++ 
Sbjct: 89  FGASQLRRRFMDWGMFHVEHQFMPVWRAGSAALKQRNALLRAGNPNLRELGFWNQQLSQT 148

Query: 194 GVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGK-FDQSFCALKEEYAK 249
             +I   R   +NAL   + E +     P +K+ L   TG   G+ + Q+   L+ +  +
Sbjct: 149 SDRIEGLRRGYLNALQRGLDEALTVLA-PELKIRLRLQTGLHKGESYAQALSRLQSDDLR 207

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-------STGEQKVVLVGIFLA 302
           + F           +  G HRSD+ ++        +HG       S G+ K+V  G+ LA
Sbjct: 208 RGF-----------SQAGFHRSDIRIE--------SHGVVARDRLSRGQAKLVAYGLVLA 248

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NET 361
              +IS + G    LL+D+++A LDE+ RN L   +   G Q  +T  D   + ++ N+ 
Sbjct: 249 QLPMISQS-GKVCTLLVDDLAAELDEEHRNQLLGYLATTGHQTLITALDMPQWAAIVNDN 307

Query: 362 AKFMRISN 369
                + N
Sbjct: 308 DALQSVEN 315


>gi|260434638|ref|ZP_05788608.1| DNA replication and repair protein RecF [Synechococcus sp. WH 8109]
 gi|260412512|gb|EEX05808.1| DNA replication and repair protein RecF [Synechococcus sp. WH 8109]
          Length = 345

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 133/295 (45%), Gaps = 22/295 (7%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
           + +G NG+GK+N+LEA+  L   R  R ++  D+ +  +P      A V G + L    +
Sbjct: 1   MVIGPNGIGKSNLLEAVELLGSLRSHRCSNDRDLIQWDAPEAL-IRADVGGGDRL---EL 56

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           KL     R  +  +   ++ R +D +     I +    +D +  G    RR++LDR+V  
Sbjct: 57  KLRRHGGRQAK--RNGKLLDRQLDLIGPLRCIGFSALDLD-LVRGEPALRRQWLDRVVLQ 113

Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SWCSSIEAQMAELGVKINIARVEMIN 206
           ++P +   M    RL+R R++L  +    S    +   + + QMA +  +I+  R   ++
Sbjct: 114 LEPVYADLMARLNRLLRQRSQLWRQRQVSSGERHALLDAFDVQMALVSTRIHRRRQRALH 173

Query: 207 ALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFC--ALKEEYAKKLFDGRKMDSM 260
            L  +   +    +     L L       LDG+  +     A++E+  ++  +  ++ S 
Sbjct: 174 RLEPIAQRWQAHLSGGTEALELHYKPGSKLDGEDAEEPWRLAIEEQLRQQRGEEERLGSC 233

Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
                +GPHR D I      +     GS G+Q+ +++G+ LA   L++   G  P
Sbjct: 234 R----VGPHR-DEIALLLGGSPARQFGSAGQQRSLVLGLKLAELELVTQLCGEPP 283


>gi|260912286|ref|ZP_05918837.1| recombination protein F [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633587|gb|EEX51726.1| recombination protein F [Prevotella sp. oral taxon 472 str. F0295]
          Length = 371

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 156/370 (42%), Gaps = 51/370 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR--- 66
           ++I  ++N  ++ L    +   F+G NG GKTN L+A+ +LS    F R++Y  +     
Sbjct: 6   ISIINYKNLRAVNLQLSPKTNCFIGHNGSGKTNFLDALYYLS----FCRSAYNPIDSQLI 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------LQINDVVIRVVDELN 117
                FF     +EG + L+++       D  +V C          + N    +    L+
Sbjct: 62  THEQDFFV----IEG-DYLSEVG------DTENVYCGMKRGAKKQFKRNK---KTYKRLS 107

Query: 118 KHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL- 173
           +H+ +  LV   P+   +  G S ERRR +D ++   D  +   +    + ++ RN LL 
Sbjct: 108 QHIGLIPLVLVSPADAALIDGGSEERRRLMDMVIAQYDTTYIEALTRCNKALQQRNALLR 167

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            E   D +     E +MA  G  + + R   +     +     ++ +    ++SL     
Sbjct: 168 MEAEPDLALLELWEEEMAAQGEVVYVKRAAFVEEFIPVFQNIHERISGGSEQVSLRYI-- 225

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                S C  + +  + +   R  D     +L G HR DL +   D       GS G+ K
Sbjct: 226 -----SHCQ-RGDLLEVIRKDRHKDRAVGYSLHGVHRDDLEM-LIDGYQLKREGSQGQSK 278

Query: 294 VVLVGIFLAH----ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMT 348
              + + LA      R  S TT   P+LLLD+I   LD  +   +  +V+ D   QIF+T
Sbjct: 279 TYALAMKLAQFDFLKRTASKTT---PLLLLDDIFDKLDSQRVERIVELVSGDSYGQIFIT 335

Query: 349 GTDKSVFDSL 358
            T++   D +
Sbjct: 336 DTNREHLDRI 345


>gi|288928367|ref|ZP_06422214.1| RecF protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331201|gb|EFC69785.1| RecF protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 371

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 154/373 (41%), Gaps = 49/373 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR--- 66
           ++I  ++N  ++ L    +   F+G NG GKTN L+A+ +LS    F R++Y  +     
Sbjct: 6   ISIINYKNLRAVNLQLSPKTNCFIGHNGSGKTNFLDALYYLS----FCRSAYNPIDSQLI 61

Query: 67  -------IGSPSFFSTFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
                  +    + S     E +  G+   S K   R+ ++ +              L++
Sbjct: 62  THEQDFFVLEGDYISEGGDAENVYCGMKRGSKKQFKRNKKAYK-------------RLSQ 108

Query: 119 HLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-T 174
           H+ +  LV   P+   +  G S ERRR +D ++   D  +   +    + ++ RN LL  
Sbjct: 109 HIGLIPLVLVSPADAALIDGGSEERRRLMDMVIAQYDTTYIEALTRCNKALQQRNALLRM 168

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           E   D +     E +MA  G  +   R   +     +     ++ +    ++SL     G
Sbjct: 169 EAEPDLALLELWEEEMAAQGKVVYAKRAAFVEEFIPVFQSIHERISGGSERVSLRYISHG 228

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           +       ++++        R  D     +L G HR DL +   D       GS G+ K 
Sbjct: 229 QRGDLLDVIRKD--------RHKDRAVGYSLHGVHRDDLEM-LIDGYQLKREGSQGQSKT 279

Query: 295 VLVGIFLAH----ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTG 349
             + + LA      R  S TT   P+LLLD+I   LD  +   +  +V+ D   QIF+T 
Sbjct: 280 YALAMKLAQFDFLKRTASKTT---PLLLLDDIFDKLDSQRVERIVELVSGDSYGQIFITD 336

Query: 350 TDKSVFDSLNETA 362
           T++   D + ++ 
Sbjct: 337 TNREHLDRILQSG 349


>gi|330721226|gb|EGG99329.1| DNA recombination and repair protein RecF [gamma proteobacterium
           IMCC2047]
          Length = 145

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 1/92 (1%)

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
           T  GPHR+DL V Y  +       S G+QK+V+  + +A   L S +TG   I LLD+++
Sbjct: 35  TQAGPHRADLRVRYLGQNAADLL-SRGQQKLVICALKIAQGYLFSKSTGRTCIYLLDDLA 93

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           A LD+  R  L ++++ +  Q+F+T  D+ +F
Sbjct: 94  AELDQVFRERLCKLLSTLDCQLFITSVDEQLF 125


>gi|148927257|ref|ZP_01810828.1| DNA replication and repair protein RecF [candidate division TM7
           genomosp. GTL1]
 gi|147887343|gb|EDK72796.1| DNA replication and repair protein RecF [candidate division TM7
           genomosp. GTL1]
          Length = 309

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 7/226 (3%)

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P   R+  G    RR F+D ++  ++P +   +  ++R+++ RN LL   +         
Sbjct: 74  PGDLRLLHGSPARRRLFIDTLISQLEPLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVW 133

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +  ++E G +I   R +    L++ + E  +     H K  ++  L   F +   ++++ 
Sbjct: 134 DVALSEYGARIVAERQKYSALLNASLRE--RYRAIAHTKDIVS--LAYSFQEXAESVQQA 189

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLAHAR 305
               L      D     T +GPHR DLI    D +A +IA  S GE + +++ +      
Sbjct: 190 MVSALHAHHVRDKALGYTTVGPHRHDLIFSMNDVEATSIA--SRGETRSIVLALKFIEVE 247

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           ++       P+LLLD++ + LD  +R AL  + +   + I  T  D
Sbjct: 248 MLRVYRDQPPLLLLDDVFSELDSTRRMALVEVGSSTQTVITTTNAD 293


>gi|318042584|ref|ZP_07974540.1| recombination protein F [Synechococcus sp. CB0101]
          Length = 344

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 157/341 (46%), Gaps = 32/341 (9%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
           + +G NG GK+N+LEA+  L   R  R +S  D+ R G      + +     EG   + +
Sbjct: 2   LVIGRNGEGKSNLLEAVELLGSLRSHRCSSDRDLIRQGERQALISAS----CEGGDLLEL 57

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME--------RRR 142
           +L  +  R  R    N  V+    EL   LR           FS L +E        RR+
Sbjct: 58  ELRLQGGRQAR---RNGKVLERQHELIGPLRCV--------GFSALDLELVRGEPALRRQ 106

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA---QMAELGVKINI 199
           +LDR+V  ++P +   +  + RL+R R++LL  G         +EA   QMA +G +++ 
Sbjct: 107 WLDRVVLQLEPVYAELLSRYGRLLRQRSQLLRRGLGAGMQPELLEAFDQQMALIGTRLHR 166

Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG---KFDQSFCALKEEYAKKLFDGRK 256
            R+  +  L  L   + ++ +    +L L  +  G   + +++    ++   ++L   R 
Sbjct: 167 RRLRALRRLQPLAAAWQERLSGGREQLQLR-YRPGSQLEGEEAEGPWRDALLEQLRQQRP 225

Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
            +    +  +GPHR ++ ++  D+     +GS G+Q+ +++ + LA   L+    G  P+
Sbjct: 226 EELRLGQCSVGPHRDEVALELGDQPAR-RYGSAGQQRTLVLALKLAELELVHQLWGEPPL 284

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           LLLD++ A LD  ++  L   V + G Q  ++ T    F  
Sbjct: 285 LLLDDVLAELDPGRQQLLLEAVGE-GHQCLVSATHLGAFSG 324


>gi|37521974|ref|NP_925351.1| recombination protein F [Gloeobacter violaceus PCC 7421]
 gi|51316323|sp|Q7NHY0|RECF_GLOVI RecName: Full=DNA replication and repair protein recF
 gi|35212973|dbj|BAC90346.1| DNA repair and genetic recombination protein [Gloeobacter violaceus
           PCC 7421]
          Length = 375

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 163/364 (44%), Gaps = 27/364 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + + +FRNYA   L   +  TI VGDN  GK+N+LEA+  L+ GR  R     ++  
Sbjct: 3   LRSVQLHDFRNYAEADLELTSPKTILVGDNAQGKSNLLEAVQLLATGRSTRALRDRELIA 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR-ISWL 125
            G        A VE +    ++ + L     R+VR   +     R   E   +L  +S+ 
Sbjct: 63  RGKEQ-ARVAATVERLGDTVELEMILRAGKRRTVR---VGGETRRTQVEALGYLHCVSFS 118

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--TEGYFD--SS 181
              +D +  G    RR +LD ++  ++P +   +  F + +  RN LL  TE   D  + 
Sbjct: 119 SLDLD-LVRGAPETRRDWLDGILLQLEPVYTNVLAQFVQALHQRNALLRSTELSPDALAE 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEY-----VQKENFP---HIKLSLTGFLD 233
                +  +      +   R  +I  L+ L   +       +E F      ++S      
Sbjct: 178 QLPCWDDLLVRAATPVMRRRHRLIERLAPLARRWHGSISGGRETFAVRYQPQISFEQEDA 237

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
               Q+   L +E  K+  +GR+  S     L+GPHR ++ +   D+      GS G+Q+
Sbjct: 238 QSVQQALQELLKE--KRTLEGRRGTS-----LVGPHRDEVDLS-IDEIPARQFGSQGQQR 289

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            +++ + LA   L+   TG  P+LLLD++ A LD  +++ L   + +   Q  +T T  S
Sbjct: 290 TLVLALKLAELELLEQVTGEVPLLLLDDVLAELDLHRQDQLLGAIQE-RVQTIVTTTHLS 348

Query: 354 VFDS 357
           +FDS
Sbjct: 349 LFDS 352


>gi|261416459|ref|YP_003250142.1| DNA replication and repair protein RecF [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372915|gb|ACX75660.1| DNA replication and repair protein RecF [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327022|gb|ADL26223.1| putative DNA replication and repair protein recF [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 419

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 90/407 (22%), Positives = 151/407 (37%), Gaps = 83/407 (20%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           IS+ R+  S+   F+    +  G NG GKT ILE+I  L+ G  FR     ++       
Sbjct: 7   ISKMRSLESMDCNFEPGINVICGPNGCGKTTILESIYLLAQGFSFRSHELRELITWKQNE 66

Query: 72  F-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 F    R E M  L   S   E R+         N   ++             + 
Sbjct: 67  LILRGEFYDEGR-ERMRALRVFSRGSEVRE---------NGETLKSPAAFFGTCPAVIMQ 116

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GYFDS 180
           PS   +  G    RRR+LD ++      +   + ++ R+++ RN+ L E           
Sbjct: 117 PSDIELLRGGPDVRRRWLDEILCFRSSANSLALRNYRRVLQQRNKWLKEFKQKGFAVGGE 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---------------------- 218
                +  Q+ +LG K+  AR+ +   +S +I  Y +K                      
Sbjct: 177 DLFRVLTLQLIDLGAKVWAARLALSKEVSEIITRYYRKLSGGVDEITCAYKSSILKTLDA 236

Query: 219 ---------ENFPHIKLSLTGFLDG--KFDQSFCA------------------------- 242
                    E    I    TG  +G  +  +  CA                         
Sbjct: 237 LDAADPLSDEMMDEIPSGATGAAEGVVEIARGECAECSADGSGNVAGSAADGSDVVSEEM 296

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFL 301
           L+  +A+KL D   ++ +   T+ GPHR DL +  C     + + GS G+ +   V +  
Sbjct: 297 LRNAFARKLADLEFVERLQGMTMAGPHRDDLAL--CASGYEMRSVGSQGQCRSAAVAMRF 354

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           A   + S      PILLLD+I A LD ++R+A+  ++ +   Q+ + 
Sbjct: 355 AAVDVASRYL-TKPILLLDDIFAELDVNRRDAVASLIREKECQVVIA 400


>gi|269977744|ref|ZP_06184704.1| DNA replication and repair protein RecF [Mobiluncus mulieris 28-1]
 gi|269934048|gb|EEZ90622.1| DNA replication and repair protein RecF [Mobiluncus mulieris 28-1]
          Length = 436

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 152/382 (39%), Gaps = 49/382 (12%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  FR+Y  L +  +    +F+G NG GKTN++EA+++L+     R  + A +   G+
Sbjct: 6   LALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAALIFRGN 65

Query: 70  PSFFSTF----ARVEG---MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           P          ARV      E  +D+ +++E    +  R + +N   +R  D L  HL  
Sbjct: 66  PEETPHAGIIRARVSPGITPEPRSDL-LEIEIVSGKPNRAM-LNRHKVRPRD-LVGHLST 122

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GY 177
               P    + SG    RR FLDR+   + P       D  + +R R   L +       
Sbjct: 123 VLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVARRHEV 182

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQ-KENFPHI----------- 224
            D       +  +  L  K+  +R ++   L  L+   Y Q     PH            
Sbjct: 183 LDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQAPHESETNPNEATPT 242

Query: 225 -------------KLSLTGFLDGKFDQSFCA---LKEEYAKKLFDGRKMDSMSRR-TLIG 267
                         +S T  +D    Q   A   + E   +     R +D   R   L G
Sbjct: 243 AENPVTARMTYRDNVSKTLGIDASARQIMFADTSVLETQIRAALRSRHLDEARRGVNLCG 302

Query: 268 PHRSDLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
            HR D  +++C     +  + S GE     + + LA   L+    G AP+LLLD++ A L
Sbjct: 303 THRDD--IEFCLHDFPVKGYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDVFAEL 360

Query: 327 DEDKRNALFRIVTDIGSQIFMT 348
           D  +R A+   + +   Q+++T
Sbjct: 361 DSHRRAAILGAI-EAADQVWIT 381


>gi|123966993|ref|YP_001012074.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9515]
 gi|123201359|gb|ABM72967.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9515]
          Length = 325

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 147/326 (45%), Gaps = 25/326 (7%)

Query: 43  ILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEG-MEGLADISIKLETRDDRSVR 101
           +LE++  LS  R  R  S  D+ +  S       A + G ++   D+ + L  +  + + 
Sbjct: 1   MLESVEVLSQLRSSRALSDKDLIKNDSE-----MAVIYGQIDFTDDLKVNLFRKGSKKIY 55

Query: 102 CLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
              +ND +++   E+  ++R      +   I       RR ++DR+V  ++P +   +  
Sbjct: 56  ---VNDSLLKKQSEIKNYIRSVCFCSNDINIVKSEPGYRRTWIDRVVSQLEPIYVELIHR 112

Query: 162 FERLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
           F RL++ R+       F     S    S + QM+ +  +I   R   I+ +   + EY  
Sbjct: 113 FNRLLKQRSYFWRSESFQKDQSSEVIESFDIQMSLICTRIFRRRRRAISRIRPYV-EYWH 171

Query: 218 ------KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
                 KE      LS    +D   ++    +  +   +L   R +++++ +   GPHR 
Sbjct: 172 NHLSKSKEQISINYLSSFENIDEAEEEEE-VISNQMVDQLQKQRAIEALTGKCSFGPHRD 230

Query: 272 DLIVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
           D  +++    I++  +GS+G+Q+  ++ + +A   L+ N     P+L+LD++ A LD ++
Sbjct: 231 D--IEFLINDISLRKYGSSGQQRTFILALKMAELDLLRNMINLPPLLILDDVLAELDMNR 288

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFD 356
           +N L   V    SQ F++ T    F+
Sbjct: 289 QNLLLNSVGK-ESQCFISATHLDTFN 313


>gi|323343966|ref|ZP_08084193.1| recombination protein F [Prevotella oralis ATCC 33269]
 gi|323095785|gb|EFZ38359.1| recombination protein F [Prevotella oralis ATCC 33269]
          Length = 372

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 155/364 (42%), Gaps = 33/364 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI  LN   +RN   + L    +    +G NGVGKTN L+A+ +LS  R       + V 
Sbjct: 5   KISILN---YRNIRDVSLTLSPKINCLIGHNGVGKTNFLDAVYYLSFCRSAFNPIDSQVI 61

Query: 66  RIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 F    + V    E + DI   ++     + +  + N    + + E    + + +
Sbjct: 62  MHDEDFFMLQGSYVNDTDEEIEDIYCGMKRG---TKKHFKRNGKEYKRLSEHIGLIPLVF 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183
           + P+   +    S ERRR +D ++   D  +   + ++ + ++ RN LL  E   D +  
Sbjct: 119 VSPADASLIDNGSEERRRLMDVVISQYDHSYIDALSNYNKALQQRNVLLRQEAEPDVALM 178

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD----GKFDQS 239
              E +MA  G  +   R        + + E++    F  I  S++G  +    G   +S
Sbjct: 179 EIWEEEMARNGELLYRKR-------DAFVKEFIPV--FQRIYSSISGDKEQVELGY--RS 227

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
            C  +    + +   R  D     +L G HR DL +   D  +    GS G+ K  ++ +
Sbjct: 228 HCQ-RGSLLEVIRHDRSKDRAVGYSLHGVHRDDLEM-LLDGYLMKREGSQGQTKTFVLAL 285

Query: 300 FLAH----ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSV 354
            LA      R  SNTT   P+LLLD+I   LD  +   +  +V+ D   QIF+T T++  
Sbjct: 286 KLAQFDFLKRTASNTT---PLLLLDDIFDKLDAARVEQIVHLVSGDSYGQIFITDTNRDH 342

Query: 355 FDSL 358
            D +
Sbjct: 343 LDRI 346


>gi|309799252|ref|ZP_07693500.1| DNA replication and repair protein RecF [Streptococcus infantis
           SK1302]
 gi|308117097|gb|EFO54525.1| DNA replication and repair protein RecF [Streptococcus infantis
           SK1302]
          Length = 164

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 3/129 (2%)

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L E +   L   R  D   + T +GPHR D+I  +    +  + GS G+ + +++ I LA
Sbjct: 35  LSESFYTALQKSRSRDLFKKNTGVGPHRDDMI--FLINGMDASFGSQGQHRSLVLSIKLA 92

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L +T 
Sbjct: 93  EIELMESITKESPILLLDDVMSELDNTRQLKLLETISQ-NIQTFITTTSLEHLQNLPDTL 151

Query: 363 KFMRISNHQ 371
               ++N Q
Sbjct: 152 SLFTVNNGQ 160


>gi|291520352|emb|CBK75573.1| hypothetical protein CIY_30620 [Butyrivibrio fibrisolvens 16/4]
          Length = 229

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 20/218 (9%)

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI---EAQMAELGVKINIA 200
           +D  +  ID  +   + ++ + +  RN LL E  +      ++   + Q+   G KI   
Sbjct: 1   MDAELCQIDKIYLSDLTNYNKALNQRNALLKEIIYKPELKETLSIWDEQLINYGKKIITR 60

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--FDQSFCALKEE--YAKKLFDGRK 256
           R + IN ++ ++ +        H K++     +GK   D S+    E+  +  +L   ++
Sbjct: 61  RQKFINDINIIVKDI-------HSKIT-----NGKENIDVSYDPNIEDIFFLDELVKNKE 108

Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
            D    +T +GPHR D+ +   D       GS G+Q+   + + L+  +L+ +T    PI
Sbjct: 109 KDLRFCQTSVGPHRDDIKI-TVDGIDIRKFGSQGQQRTCALSLKLSEIKLVEDTINDKPI 167

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           LLLD++ + LD+++++ L   + D  + I  TG D+ V
Sbjct: 168 LLLDDVLSELDKNRQSDLLDNLLDTQTIITCTGIDEFV 205


>gi|53802865|ref|YP_115418.1| DNA replication and repair protein RecF [Methylococcus capsulatus
           str. Bath]
 gi|81680705|sp|Q602N2|RECF_METCA RecName: Full=DNA replication and repair protein recF
 gi|53756626|gb|AAU90917.1| DNA replication and repair protein RecF [Methylococcus capsulatus
           str. Bath]
          Length = 359

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 149/366 (40%), Gaps = 25/366 (6%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I++ RN  S  L       +  G NG GKT++LEAI  LS G+ FR      + R   
Sbjct: 6   LDIADVRNIESASLSPGEGLNLLFGANGSGKTSLLEAIYLLSRGKSFRSPQSGRIIRFDR 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV--- 126
           P        V G  G     I +  R  RS + +++     R  D   + +R+   V   
Sbjct: 66  PCLT-----VSGSIGRPGAGIAVGVRLGRSEKEVRVGG---RSCDSSAQLIRLFPAVLIH 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P+   +  G    RR+ LD  VF ++  +   +  F R +  RN +L  G    S  ++ 
Sbjct: 118 PASVALLEGPPRWRRQMLDWGVFHVEQGYLDLLRRFSRTLEQRNAVL-RGDAPGSSLAAW 176

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCALKE 245
             ++A  G         MI  L S  ++ + + +F  +  +L G  D +   +       
Sbjct: 177 SGELARWGT--------MIAELRSSYLDRI-RMHFGEMVSALLGRTDVELVVRPGWRAGW 227

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            YA  L   +  D     T  GP + D  V    +     + S G+ K++   + LA A 
Sbjct: 228 SYADALAASQPTDRRLGYTEPGPQKGDFAVLVGGRPAR-DYLSRGQLKLLTYALLLAQAG 286

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT--GTDKSVFDSLNETAK 363
           L+         LL+D+I++ LD   +  L  +V   G Q F+T  G  + V   +  TA+
Sbjct: 287 LLEADQPGRVCLLVDDIASELDSRNQERLLSLVKSTGLQSFVTFSGATQGVAAVVGRTAR 346

Query: 364 FMRISN 369
              +  
Sbjct: 347 VFHVEQ 352


>gi|323717342|gb|EGB26547.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           CDC1551A]
          Length = 328

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 130/306 (42%), Gaps = 34/306 (11%)

Query: 66  RIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           R+G+  +  ST    +G E   D+ I         V   ++N   +R   ++   LR   
Sbjct: 5   RVGTDRAVISTIVVNDGRECAVDLEIATG-----RVNKARLNRSSVRSTRDVVGVLRAVL 59

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------- 175
             P    +  G   +RRR+LD +     P       ++ER++R R  LL           
Sbjct: 60  FAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRGD 119

Query: 176 -GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF- 231
            G FD+   W    ++++AE G ++  AR++++N L+  + +  Q    P  + +  G+ 
Sbjct: 120 RGVFDTLEVW----DSRLAEHGAELVAARIDLVNQLAPEVKKAYQL-LAPESRSASIGYR 174

Query: 232 ----LDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITI 284
               + G  +QS    +            + D+   R   L+GPHR DLI+   D+    
Sbjct: 175 ASMDVTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK- 233

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
              S GE   + V + LA  +L+    G  P+LLLD++ A LD  +R AL     +   Q
Sbjct: 234 GFASHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQ 291

Query: 345 IFMTGT 350
           + +T  
Sbjct: 292 VLVTAA 297


>gi|257462456|ref|ZP_05626868.1| RECF protein [Fusobacterium sp. D12]
 gi|317060113|ref|ZP_07924598.1| DNA replication and repair protein recF [Fusobacterium sp. D12]
 gi|313685789|gb|EFS22624.1| DNA replication and repair protein recF [Fusobacterium sp. D12]
          Length = 248

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 6/202 (2%)

Query: 16  RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFST 75
           RN  + ++ F A   +F G NG GKT+ILEAI F   G  FR    +++      +  S 
Sbjct: 12  RNLKNQKISFCAPIQVFYGKNGQGKTSILEAIYFAGTGLSFRTRHTSEMITYTEDT-LSC 70

Query: 76  FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSG 135
           F  +E  +  ++ S+ +   +D+         +      E   ++ + + +P    + +G
Sbjct: 71  F--LEYQDQFSEKSLAVSIENDKKFFFFLGKKISQM---EFYGNVNMIFYIPEDVMLING 125

Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
               RR F+DR +   D  +  ++  F  L++ RN+ L E  +++   +  E +  E G 
Sbjct: 126 SPSLRRLFIDREISQTDSFYLHQLKKFSHLLKIRNKYLKEKLYENEEYAIYEKEFVECGS 185

Query: 196 KINIARVEMINALSSLIMEYVQ 217
            +   R + I  +S+ + +  Q
Sbjct: 186 YLIEQRKKYIQEISNFVEKIYQ 207


>gi|332294864|ref|YP_004436787.1| DNA replication and repair protein recF [Thermodesulfobium
           narugense DSM 14796]
 gi|332177967|gb|AEE13656.1| DNA replication and repair protein recF [Thermodesulfobium
           narugense DSM 14796]
          Length = 323

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/341 (21%), Positives = 148/341 (43%), Gaps = 33/341 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I  FRN+         ++ I +G+N  GKTN+LEAI     G+        ++ +   
Sbjct: 3   LEIHHFRNFEHNTFNLSKKNLI-IGENASGKTNLLEAIYLTLRGKTKNNIPNQNLIQ--- 58

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                 F+R   +        ++E   +   + L+IND  +    +L ++ ++ ++    
Sbjct: 59  ------FSRESALIRNTVYGKRIEIMMNNKNKILKINDKKLNSSIKLWQYFKVFYINLFD 112

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + S     +R+FLD ++  I+P   +   D + L   +N +L +   D     S + +
Sbjct: 113 SLLLSQEPKNKRKFLDEIIININPEKIKLYKDLKILNTQKNYVL-KNKTDKELIKSYDIK 171

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           + +L  +I+  R E++N +     + +++E+           +  KF +S  + KE   K
Sbjct: 172 LTQLSQEISNLREEVLNNVILNTKKLLKEES-----------IQIKFYKSLES-KEIKNK 219

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           ++ + +     ++R +I P R +  V    + I  +  STGE K   + + LA   +   
Sbjct: 220 EIIEAK-----TKRNIINPSRDNFSVKI--RNIDSSFLSTGEIKKFSLALHLAKISIFKE 272

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
               +   L DEI++ LD+   + L + +  I   + +T T
Sbjct: 273 HNCVS---LFDEINSFLDKANLDILLKWLQKIDGYVIVTST 310


>gi|227496603|ref|ZP_03926881.1| recombination protein F [Actinomyces urogenitalis DSM 15434]
 gi|226833883|gb|EEH66266.1| recombination protein F [Actinomyces urogenitalis DSM 15434]
          Length = 409

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 163/402 (40%), Gaps = 56/402 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+  +FR+Y  L L  +   T F+G NG GKTN++EA+ +LS     R  + + + R
Sbjct: 3   VSDLSADDFRSYEHLVLSLEPGVTAFIGSNGQGKTNLVEAVGYLSNLTSHRVGADSALIR 62

Query: 67  ---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRI 122
               G P       R + + G     +++E    ++ R  L  + V  R   EL   LR 
Sbjct: 63  RAEPGQPQPAGAVLRAKVVHGERPTVLEIELISGKANRARLGRSPVRPR---ELLGVLRT 119

Query: 123 SWLVP---SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF- 178
               P   S+ R   G+   RRRFLD +   + P       + ++++  R  LL      
Sbjct: 120 VIFAPEDLSLVREEPGV---RRRFLDDLAVTLRPSLAGVRTEHDKILAQRASLLKSARAA 176

Query: 179 ---DSSWCSSIE---AQMAELGVKINIARVEMINALSSLIM---EYVQKENFP-HIK--- 225
               +S  S++E   AQ+A     +  ARV+++  L   +    E V +   P H+    
Sbjct: 177 RRSTASMLSTLEVWDAQLAAAAATLIAARVDVVRRLRPWVASAYEAVSQAQSPVHLAYRS 236

Query: 226 --LSLTGFLDGK-------------------FDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
             L+  G  D                      DQ+  A + E A      R++D  +   
Sbjct: 237 SLLAHEGMADPDPRAITPGQEESWPPGEAELLDQASTAERLEAAMGQLHAREIDRGA--N 294

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF-----APILLL 319
           L+G HR +L + +          S GEQ  + + + LA   ++ +          P+L+L
Sbjct: 295 LVGAHRDELSL-FLSGMPAKGFASHGEQWSLALALRLASYEMLRHDVAAYGGDGEPVLIL 353

Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           D++ A LD+ +R AL   V      +      + V   L+ T
Sbjct: 354 DDVFASLDDKRRRALAHTVAGAQQVLVTAAVPQDVPGELDGT 395


>gi|311063462|ref|YP_003970187.1| RecF DNA replication and repair protein [Bifidobacterium bifidum
           PRL2010]
 gi|310865781|gb|ADP35150.1| RecF DNA replication and repair protein [Bifidobacterium bifidum
           PRL2010]
          Length = 437

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 150/400 (37%), Gaps = 58/400 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--------- 57
           I  L +  +R++    L       I  G NG+GKTNI+EAI  LS G   R         
Sbjct: 3   ISRLALDHYRSWNHCVLDLTPGINILQGANGLGKTNIVEAIEVLSTGLSHRTSSSVPLVQ 62

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADI-------------SIKLE-TRDDRSVRCL 103
           R  +A   R    S        +G+   AD              +  LE T   R     
Sbjct: 63  RGEHAATIRANIESVTDPEPADDGVNASADAVYISDMKPVRQTQTTTLEATIAARGANRA 122

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           +IN    R + E+   L      P   ++ +G    RR F++++   + P +  R+  F 
Sbjct: 123 RINGGQSRYLREILGTLPTVSFTPEDQQLVAGDPAVRRSFINQVASLLIPGYANRLQSFT 182

Query: 164 RLMRGRNRLLTE-------GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIM 213
            + + R  LL +       G    +  S +E    Q  E GV ++  R  +I  L+    
Sbjct: 183 HVAKQRAALLKQLGQWQRAGSPIDAALSGLEIWTGQFIEAGVALSRDRQRIIAELNKSFG 242

Query: 214 EYVQK-----ENFPHIKLSLTGFLDG----------KFD-----QSFCALKEEYAKKLFD 253
               +      + P          DG           FD     Q+   L  ++ ++++ 
Sbjct: 243 PLYARLAGVAGDLPSNAEIQDAAQDGGEQAAVEYVPSFDEILGTQAPEPLISQHFQRIYP 302

Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
           G     ++   LIGP R DL+V   +        S GE   + + + +A  R +      
Sbjct: 303 GEVSRGVN---LIGPQRDDLLV-TLNGMPAREFASNGEMWTLALALKMAQYRALCEYFDT 358

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            P+++LD++ A LDE +R  + R       Q+ +T   +S
Sbjct: 359 RPVVILDDVFAQLDESRRTEILRFAA-AQDQVLITAAAES 397


>gi|198282151|ref|YP_002218472.1| DNA replication and repair protein RecF [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666274|ref|YP_002424517.1| DNA replication and repair protein RecF [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198246672|gb|ACH82265.1| DNA replication and repair protein RecF [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518487|gb|ACK79073.1| DNA replication and repair protein RecF [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 350

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 143/354 (40%), Gaps = 38/354 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L+I   R   +L L  D Q    +G NG GK+++LEAI  L  G+ +R  S   V
Sbjct: 1   MPLEALHIQSVRCIETLDLKTDRQWNWLIGANGAGKSSVLEAIHVLGTGQTWRHGS-RHV 59

Query: 65  TRIGSPSFFSTFARVEG----MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            R G  ++  + A + G    +    +        +      L ++ + ++ + E N H 
Sbjct: 60  LREGDDAYLVS-AHLSGHFLALRRRGEEREIRYDGEPLGSAWLLLDILPLQSLHEDNSHF 118

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                        SG +  RRR LD  ++  D  +      + R ++ RN  L   +   
Sbjct: 119 ------------VSGTAEGRRRVLDWGIYYADRYYGTVFRQYRRALQQRNAWLKSDHGRQ 166

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFD 237
            W   +       G  I   R   + A+   ++   ++ +     LSL   +G+ +G   
Sbjct: 167 PWDDGVIVA----GEDIQQRRQAHLAAVQLEVVTLWERWSGSLSGLSLHLHSGWKEG-MA 221

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVL 296
              C L++          + D  +  T  GPHR++L      K A  I   S G+ +V+ 
Sbjct: 222 LGDCLLRDH---------EQDREAGYTHSGPHRANLAFRVRGKPAPDIL--SRGQLRVLG 270

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +   LA  +++       P +L+D+ +A LD   R+     +  +G QIF   T
Sbjct: 271 LAYRLAQVKILKQAGLPLPTILIDDFAAELDASARDWWVNELDLLGVQIFAAVT 324


>gi|254421230|ref|ZP_05034948.1| DNA replication and repair protein RecF [Synechococcus sp. PCC
           7335]
 gi|196188719|gb|EDX83683.1| DNA replication and repair protein RecF [Synechococcus sp. PCC
           7335]
          Length = 401

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 168/387 (43%), Gaps = 48/387 (12%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  FRNY+S  + F A  TI +GDN  GK+N+LEA+  L+  +  R +   D+   G  +
Sbjct: 1   MQNFRNYSSQSVAFGAPKTILLGDNAQGKSNLLEAVELLATLKSHRTSRDRDLVGEGKKT 60

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
                A+++   G +++++ L     R+   +   + + R  D L     + +    +D 
Sbjct: 61  AH-IKAQLQKELGPSELNLVLRNGGRRA--TILNGETLKRQQDFLGSLNAVQFSSLDIDL 117

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-------FDSSWCS 184
           +  G   ERR ++D ++  ++P +   +  + ++++ RN  + +         FDS+  +
Sbjct: 118 VRGGPG-ERRSWIDTLLTQLEPVYAYILQQYNQVLKQRNAFIKQHTDEENSQPFDSTQMA 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ-----KENF-----PHIK--LSLTGFL 232
             +AQ+   G ++   R   +  L  L   + +      E       P+I   +S TG  
Sbjct: 177 LWDAQLVAAGTRVIRRRSRGLQRLIPLAQAWHRAISGDAEQLMITYQPNISTTVSTTGLS 236

Query: 233 D--GKFDQSFCALKEEYAKKLFDGRKMDS-------------------MSRRTLIGPHRS 271
              G   +    LK+     + D +  D                      R +L GPHR 
Sbjct: 237 TEAGLSTEETLLLKDPKKDSVEDAQLDDPDHIQQVFFEKIKSRAIAEYHQRTSLAGPHRD 296

Query: 272 DLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
           D  +D+  +      +GS G+Q+ +++ + LA   LI    G  P+LLLD++ A LD  +
Sbjct: 297 D--IDFSINHTPARQYGSQGQQRTLVLALKLAELELIEAVIGEPPLLLLDDVLAELDLKR 354

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDS 357
           +N L   + D   Q  +T T    FD+
Sbjct: 355 QNQLLETIED-RFQTLITTTHLGAFDA 380


>gi|212550984|ref|YP_002309301.1| DNA replication and repair protein RecF [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|259563354|sp|B6YRR8|RECF_AZOPC RecName: Full=DNA replication and repair protein recF
 gi|212549222|dbj|BAG83890.1| DNA replication and repair protein RecF [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 366

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 154/368 (41%), Gaps = 42/368 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + I  F+N     L F  +    +GDNG+GKTN+L+A+ +L+  +     +  D   
Sbjct: 3   IEIVTILNFKNIEEGSLSFSPKINYLLGDNGMGKTNLLDALYYLAFTKN--HTNLTDSQL 60

Query: 67  IGSPSFFSTF-ARVEGMEGLADI--SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           I     F+   A  +  + + +I   IKL+ R     +  + N    + + E    +   
Sbjct: 61  INYNKDFAVLHAFYKDKDNIEEIYCGIKLKQR-----KIFKRNKKEYKKLSEHIGLIPTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181
            + P+   +    S ERR+F D ++   D  + R +I + + ++ RN LL       S  
Sbjct: 116 MVSPNDTNMIQFGSNERRKFADMLISQYDKEYLRTLIYYNQALQQRNFLLRNALPSLSGE 175

Query: 182 ----WCSSIEAQMAELGVKINIARVEMINALSSLIMEY---VQKENFPHIKLSLTGFLDG 234
               W    E QM   G  I   R         L  EY   +  +N   I L     LD 
Sbjct: 176 EFEIW----EEQMGTTGEIIYQKRKNFTTDFLPLFKEYYYTISDKN-ETIDLEYVSHLD- 229

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD---LIVDYCDKAITIAHGSTGE 291
             D S   L       L++ R+ D +   T  G H+ D   L+ ++  + I    GS G+
Sbjct: 230 --DHSLFEL-------LYEKRERDKILGFTSTGIHKDDFNFLLNNFLIRKI----GSQGQ 276

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGT 350
            K  L+ + LA    +       PILLLD++   LD  +   + R++      QIF+T T
Sbjct: 277 NKTYLIALKLAQFSFLVQKGLSIPILLLDDLFDKLDAKRVEKIIRLLAQKTFGQIFITDT 336

Query: 351 DKSVFDSL 358
           ++   D++
Sbjct: 337 NRKHLDNI 344


>gi|269954814|ref|YP_003324603.1| DNA replication and repair protein RecF [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303495|gb|ACZ29045.1| DNA replication and repair protein RecF [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 485

 Score = 57.8 bits (138), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 140/336 (41%), Gaps = 36/336 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++ +FR+YAS+ +  +     FVG NG GKTN++EAI +++     R ++ A + R
Sbjct: 3   VSHLSLLDFRSYASVDVELEPGPNAFVGRNGQGKTNLVEAIGYVATLGSHRVSNDAPLVR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+        R   + G    +++LE    R+ R  +IN   +    ++   LR     
Sbjct: 63  AGA---ERAVVRTRIVRGDRASTVELEITPGRANRA-RINRGQLGRARDVLGILRTVLFA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCS 184
           P    +  G    RR+ LD++V  + PR    + D+ER+ R R+ LL    G   +    
Sbjct: 119 PEDLALVKGDPDGRRKLLDQLVVQLLPRAAGLLGDYERVNRQRSALLKSLRGQRAAGRSP 178

Query: 185 SI------EAQMAELGVKINIARVEMINAL-SSLIMEYVQKENF-PHIKLSLTGFLDGKF 236
            +      +A+ A+LG +I   R++++ A+   +   Y Q  +   H +L     LD   
Sbjct: 179 DLGTLEVWDAKAAQLGGQILGMRLQLVQAMRPHVAAAYAQVSDADGHAELGYRSSLDAVL 238

Query: 237 ---------------------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
                                  S   L+      +   R  +     +L+GPHR DL++
Sbjct: 239 PDDAGASAGGAAILPADLADAPPSAVELETLLLAGMAAARSQEVDRGVSLVGPHRDDLVL 298

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
                     + S GE     + + LA  RL+  T 
Sbjct: 299 TLGGLPAK-GYASHGESWSFALALRLASYRLLGGTP 333


>gi|325912222|ref|ZP_08174619.1| DNA replication and repair protein RecF [Lactobacillus iners UPII
           143-D]
 gi|325475881|gb|EGC79050.1| DNA replication and repair protein RecF [Lactobacillus iners UPII
           143-D]
          Length = 276

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 121/282 (42%), Gaps = 30/282 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++ +   
Sbjct: 6   LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    A + G     +I   L+       +   IN +  + +      +      P  
Sbjct: 63  --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D     I+  +   +  + ++++ RN  L    ++   D  + + 
Sbjct: 121 LSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFDQSFCA 242
           +  Q+A L  ++   RV  ++ L         KEN       ++     LD ++  SF  
Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL---------KENAKKAYAFISDQREILDIEYKASFPE 231

Query: 243 LKEE------YAKKL--FDGRKMDSMSR-RTLIGPHRSDLIV 275
             E+      Y K L  F+  +++ M    TL+GPHR DL V
Sbjct: 232 FDEKDSVEKIYKKILLSFEHVRVNEMRLGTTLVGPHRDDLQV 273


>gi|313829192|gb|EFS66906.1| DNA replication and repair protein RecF [Propionibacterium acnes
           HL063PA2]
          Length = 204

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 7/196 (3%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDILGV-LRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL       S  
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALL------KSLS 179

Query: 184 SSIEAQMAELGVKINI 199
               +  AE+G  ++I
Sbjct: 180 GKGRSAGAEIGAAVDI 195


>gi|89512208|gb|ABD74000.1| recombination protein F [Mycobacterium avium subsp.
           paratuberculosis]
          Length = 155

 Score = 56.6 bits (135), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 6/142 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A   L      T+F+G NG GKTN+LEA+ + S     R  + A +
Sbjct: 1   VYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALRYSSTLGSHRVGTDAPL 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+  +  ST    +G E   D+ I    R +++    ++N   +R   E+   LR  
Sbjct: 61  IRAGADRAVVSTIVVNDGRECAVDLEIA-AGRANKA----RLNRSPVRSTREVLGVLRAV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLD 145
              P    +  G   ERRR+LD
Sbjct: 116 LFAPEDLALVRGDPSERRRYLD 137


>gi|15835874|ref|NP_300398.1| ATPase [Chlamydophila pneumoniae J138]
 gi|8978713|dbj|BAA98549.1| RecF-ABC superfamily ATPase [Chlamydophila pneumoniae J138]
          Length = 207

 Score = 56.6 bits (135), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 12/170 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L +  FRN++ L +    +      +   GKTN+LEA+  LS GR FR     D 
Sbjct: 5   MKICSLKLKNFRNHSDLEISLAPKL-----NYAQGKTNLLEALYVLSLGRSFRTQHLTDT 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              GS  FF     +E       +   L    D+  + +  N + I+ + +L   + I  
Sbjct: 60  ITFGSSHFF-----LETQFEKDHLPQALSIYTDKQGKKICYNQLPIKTLSQLIGKVPIV- 113

Query: 125 LVPSMDRIF-SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           L  S DR+  SG   +RR FL+ ++   D  +   +  + R ++ RN LL
Sbjct: 114 LFSSKDRLLISGAPADRRLFLNLLLSQCDNHYTLCLSYYHRALQQRNALL 163


>gi|310286523|ref|YP_003937781.1| replication and repair protein recF [Bifidobacterium bifidum S17]
 gi|309250459|gb|ADO52207.1| replication and repair protein recF [Bifidobacterium bifidum S17]
          Length = 420

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 151/397 (38%), Gaps = 68/397 (17%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFR---------RASYADVTRIGSPSFFSTFARVEG 81
           I  G NG+GKTNI+EAI  LS G   R         R  +A   R    S        +G
Sbjct: 10  ILQGANGLGKTNIVEAIEVLSTGLSHRTSSSVPLVQRGEHAATIRANIESVTDPEPADDG 69

Query: 82  MEGLADISIKLETRDDRSVRCLQ-----------------INDVVIRVVDELNKHLRISW 124
           +   AD    ++  D + VR  Q                 IN    R + E+   L    
Sbjct: 70  VNTSAD---AVDISDMKPVRPTQTTTLEATIAARGANRARINGGQSRYLREILGTLPTVS 126

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY 177
             P   ++ +G    RR F++++   + P +  R+  F  + + R  LL        EG 
Sbjct: 127 FAPEDQQLVAGDPAVRRSFINQVASLLIPGYANRLQSFTHVAKQRAALLKQLGQWQREGS 186

Query: 178 FDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQK-----ENFPHIKLSLT 229
              +  S +E    Q  E GV ++  R  +I  L+        +      + P       
Sbjct: 187 PIDAALSGLEIWTGQFIEEGVALSRDRQRIIAELNKSFGPLYARLAGVAGDLPSNAEIQD 246

Query: 230 GFLDG----------KFD-----QSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDL 273
              DG           FD     Q+   L  ++ ++++ G     +SR   LIGP R DL
Sbjct: 247 AAQDGGEQAAVEYVPSFDEILGTQAPEPLISQHFQRIYPGE----VSRGVNLIGPQRDDL 302

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
           +V   +        S GE   + + + +A  + +       P+++LD++ A LDE +R  
Sbjct: 303 LV-TLNGMPAREFASNGEMWTLALALKMAQYQALCEYFDTRPVVILDDVFAQLDESRRTE 361

Query: 334 LFRIVTDIGSQIFMTGTDKSVFDSL--NETAKFMRIS 368
           + R       Q+ +T   +S    L  NE+A+   I 
Sbjct: 362 ILRFAA-AQDQVLITAAAESDIPILPANESAESGEIP 397


>gi|224283954|ref|ZP_03647276.1| Recombinational DNA repair ATPase [Bifidobacterium bifidum NCIMB
           41171]
 gi|313141106|ref|ZP_07803299.1| recombination protein RecF [Bifidobacterium bifidum NCIMB 41171]
 gi|313133616|gb|EFR51233.1| recombination protein RecF [Bifidobacterium bifidum NCIMB 41171]
          Length = 420

 Score = 56.2 bits (134), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 146/380 (38%), Gaps = 66/380 (17%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFR---------RASYADVTRIGSPSFFSTFARVEG 81
           I  G NG+GKTNI+EAI  LS G   R         R  +A   R    S        +G
Sbjct: 10  ILQGANGLGKTNIVEAIEVLSTGLSHRTSSSVPLVQRGEHAATIRANIESVTDPEPADDG 69

Query: 82  MEGLADISIKLETRDDRSVRCLQ-----------------INDVVIRVVDELNKHLRISW 124
           +   AD    ++  D + VR  Q                 IN    R + E+   L    
Sbjct: 70  VNTSAD---AVDISDMKPVRQTQTTTLEATIAARGANRARINGGQSRYLREILGTLPTVS 126

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GY 177
             P   ++ +G    RR F++++   + P +  R+  F  + + R  LL +       G 
Sbjct: 127 FTPEDQQLVAGDPAVRRSFINQVASLLIPGYANRLQSFTHVAKQRAALLKQLGQWQRAGS 186

Query: 178 FDSSWCSSIE---AQMAELGVKINIARVEMINALS-SLIMEYVQ----KENFPHIKLSLT 229
              +  S +E    Q  E GV ++  R  +I  L+ S    Y +      + P       
Sbjct: 187 PIDAALSGLEIWTGQFIEAGVALSRDRQRIIAELNKSFGPLYARLAGVAGDLPSNAEIQD 246

Query: 230 GFLDG----------KFD-----QSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDL 273
              DG           FD     Q+   L  ++ ++++ G     +SR   LIGP R DL
Sbjct: 247 AAQDGGEQAAVEYVPSFDEILGTQAPEPLISQHFQRIYPGE----VSRGVNLIGPQRDDL 302

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
           +V   +        S GE   + + + +A  R +       P+++LD++ A LDE +R  
Sbjct: 303 LV-TLNGMPAREFASNGEMWTLALALKMAQYRALCEYFDTRPVVILDDVFAQLDESRRTE 361

Query: 334 LFRIVTDIGSQIFMTGTDKS 353
           + R       Q+ +T   +S
Sbjct: 362 ILRFAA-AQDQVLITAAAES 380


>gi|40017|emb|CAA26220.1| unnamed protein product [Bacillus subtilis]
          Length = 323

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 133/319 (41%), Gaps = 45/319 (14%)

Query: 76  FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSG 135
           +A++EG     + +I ++    +  +  ++N +  + + +    L      P    +  G
Sbjct: 20  YAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKG 79

Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIEAQMA 191
               RRRFLD  +  + P +   +  +++++  RN  L    T    D +    +  Q+ 
Sbjct: 80  SPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDRTMLDVLTDQLV 139

Query: 192 ELGVKINIARVEMI---------------NALSSLIMEYVQKENFPHIKLSLTGFLD--- 233
           E+  K+ + R++                   L  L ++Y       H  L ++  LD   
Sbjct: 140 EVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKY-------HTALDVSDPLDLSK 192

Query: 234 --GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
               + ++F  L+E+  ++             TL GPHR D++  Y +      +GS G+
Sbjct: 193 IGDSYQEAFSKLREKEIERGV-----------TLSGPHRDDVLF-YVNGRDVQTYGSQGQ 240

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGT 350
           Q+   + + LA   LI    G  PILLLD++ + LD+ +++ L   +   + + +  T  
Sbjct: 241 QRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQGRVQTFVTTTSV 300

Query: 351 DKSVFDSLNETAKFMRISN 369
           D    ++L +   F R+ N
Sbjct: 301 DGIDHETLRQAGMF-RVQN 318


>gi|126640118|ref|YP_001083102.1| recombination protein F [Acinetobacter baumannii ATCC 17978]
          Length = 280

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 120/266 (45%), Gaps = 35/266 (13%)

Query: 101 RCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
           + +++N   +    +L K L +  + P    I    +  RR+ LD ++F ++P       
Sbjct: 9   QLMKVNGDTVATQGQLAKLLPLQHIDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQ 68

Query: 161 DFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMI--------NALSSL 211
            + R ++ RN LL T      +        +++ G  ++  R+ ++        N LS L
Sbjct: 69  YYSRALKQRNTLLKTRRNLSLADLEPWNKMLSDYGEILHSQRLSIVEQWNVYFQNDLSQL 128

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           +         P +++ L      ++   F   ++   + L +  + D   R T  GPHR+
Sbjct: 129 L---------PDLEIEL------EYSPGFHT-EQGLMQDLLNQHQKDIERRYTEYGPHRA 172

Query: 272 DLIVD----YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           DL +     + D  +     S G++K++++ + L+   ++ + +    ++LLD+++A LD
Sbjct: 173 DLRLKTPFGHADDVL-----SRGQKKLLIIALKLSQIAML-HASNKETVVLLDDLTAELD 226

Query: 328 EDKRNALFRIVTDIGSQIFMTGTDKS 353
              +  L   ++ +GSQ+FMT  D +
Sbjct: 227 LTAQQRLIERLSQLGSQVFMTTLDHA 252


>gi|226326918|ref|ZP_03802436.1| hypothetical protein PROPEN_00778 [Proteus penneri ATCC 35198]
 gi|225204755|gb|EEG87109.1| hypothetical protein PROPEN_00778 [Proteus penneri ATCC 35198]
          Length = 164

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 3/157 (1%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I  FRN     L         VG NG GKT+ILEAI  L  GR FR +    V +    +
Sbjct: 8   IRHFRNIEQADLPLADGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSSQANRVIQHDENA 67

Query: 72  FFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130
           F     R+ G+ E     +I L ++D      ++I+      + EL K L +  + P   
Sbjct: 68  FI-LHGRLSGLNEESRGYAIGL-SKDREGNSTVRIDGSDGHKIAELAKLLPMQLITPEGF 125

Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
            + +G    RR F+D   F  +PR  R M+ F+   +
Sbjct: 126 TLLNGGPKYRRAFIDWGCFHNEPRFFRCMVGFKTCFK 162


>gi|294786217|ref|ZP_06751471.1| RecF protein [Parascardovia denticolens F0305]
 gi|315225747|ref|ZP_07867535.1| recombination protein F [Parascardovia denticolens DSM 10105]
 gi|294485050|gb|EFG32684.1| RecF protein [Parascardovia denticolens F0305]
 gi|315119879|gb|EFT83011.1| recombination protein F [Parascardovia denticolens DSM 10105]
          Length = 405

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 154/376 (40%), Gaps = 47/376 (12%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + ++R++    +       + VG NG+GKTNI+EA+ FLS G   R  S   + R G+
Sbjct: 6   LILDDYRSWPHCLVDLTPGVNVLVGHNGLGKTNIMEAVEFLSTGGSHRVRSSQPLVRQGA 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
               +   R + ++G  +    + T   R     +IN+     + ++   ++     P  
Sbjct: 66  K---AATIRAKLVQGDRETQYTV-TIPGRGANRAKINNGPSLYMRDIVGQVKTVVFTPED 121

Query: 130 DRIFSGLSMERRRFLD-------RMVFAIDPRH----RRRMIDFERLMRGRNRLLTEGYF 178
             + S     RRRFLD       R  + +  R+    ++R+   +R+ + R      G  
Sbjct: 122 QLLISMDPGHRRRFLDDAGVQLIRPYYDLLQRYAHVAKQRVALLKRISQARFGSSPFGGL 181

Query: 179 D--SSWCSSIE---AQMAELGVKINIARVEMINALSSLIM----------EYVQKENFPH 223
           D   +  +S+E    Q+  LG+ +   R ++   LS +            +  Q    P 
Sbjct: 182 DDLDASYASLEVWTGQLINLGLALTQERADICQRLSPIFNRTYRHLAGDGQEAQLRYLPS 241

Query: 224 IKLSLTGFLDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
            +  L   +D   DQ     +  ++ ++LF+G        R LIGPHR D  V++     
Sbjct: 242 FEEFLE--IDPAGDQEVVFDRISQHFQRLFEGELAQG---RNLIGPHRDD--VEFVLNGF 294

Query: 283 TIA-HGSTGE-------QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
               + S GE        K+ L  + L   +      G  PIL+LD++ + LD  +R  +
Sbjct: 295 PARDYASNGELWTLSLALKMSLFQLLLRVEQEGEEGEGGEPILILDDVFSQLDNSRREKI 354

Query: 335 FRIVTDIGSQIFMTGT 350
               +  G Q+ +T  
Sbjct: 355 VDFASKQG-QVLITAA 369


>gi|213865136|ref|ZP_03387255.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 156

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 4/138 (2%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R    +
Sbjct: 8   IKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQEA 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
           F     R++G E    I +  + + D  VR   I+      + EL   + +  + P    
Sbjct: 68  FV-LHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLITPEGFT 123

Query: 132 IFSGLSMERRRFLDRMVF 149
           + +G    RR FLD   F
Sbjct: 124 LLNGGPKYRRAFLDWGCF 141


>gi|309804865|ref|ZP_07698927.1| putative recombination protein F [Lactobacillus iners LactinV
           09V1-c]
 gi|309805908|ref|ZP_07699940.1| putative recombination protein F [Lactobacillus iners LactinV
           03V1-b]
 gi|308165804|gb|EFO68025.1| putative recombination protein F [Lactobacillus iners LactinV
           09V1-c]
 gi|308167684|gb|EFO69831.1| putative recombination protein F [Lactobacillus iners LactinV
           03V1-b]
          Length = 117

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 2/88 (2%)

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
           TL+GPHR DL V + +K     + S G+Q+ +++ I LA   L+       PILLLD++ 
Sbjct: 6   TLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVLSIKLAEIDLMHQILNEYPILLLDDVM 64

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           + LD  ++  L   +    +Q F+T TD
Sbjct: 65  SELDNIRQKNLLNYING-KTQTFITTTD 91


>gi|95929988|ref|ZP_01312728.1| Recombinational DNA repair ATPase (RecF pathway)-like
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133957|gb|EAT15616.1| Recombinational DNA repair ATPase (RecF pathway)-like
           [Desulfuromonas acetoxidans DSM 684]
          Length = 331

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 151/352 (42%), Gaps = 44/352 (12%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYADV 64
           KIK  N   FR +  L +  + ++ I+ G NG GKT+++E++   S  R    +    D+
Sbjct: 4   KIKLQN---FRCFKELEINLNKKNIIY-GLNGSGKTSLVESLYLCSNYRTLSPKTKNNDL 59

Query: 65  TRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            +  S +   F +T  +           ++L    ++ +        V+  V    K ++
Sbjct: 60  IKFNSENAEIFINTKNK-----------LRLSISKNKKIYLDGFESDVLSFV----KSIK 104

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
             + +     IF      RR++ D+++F +D  +   +  + +++R RN           
Sbjct: 105 CVFFLSDEIFIFFSKPSSRRKYFDQLIFNLDSDYLLLVQKYIKILRNRN----------I 154

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
            C   + ++ EL +     + ++ N +S     YV+       K+S    L  K + S  
Sbjct: 155 QCK--KNKVLELDIWTEYLK-DINNRISEKKKIYVENLTKEFKKVS-NDLLGKKVEFSIE 210

Query: 242 ALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             K+EY    F G +   +   RTL G H  D  + Y D     ++ S G++K+ L  I 
Sbjct: 211 IDKKEY----FPGIENKEIENGRTLFGHHLEDYSL-YIDGVNLNSYSSNGQKKLFLFLIK 265

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           L+H  L S    +   L++D++ + LD    N++   ++ I  Q+ +T  DK
Sbjct: 266 LSHLSL-SEFYSYNQALIIDDLESELDNITINSILDYLSKINKQVIITNIDK 316


>gi|329891031|ref|ZP_08269374.1| recF [Brevundimonas diminuta ATCC 11568]
 gi|328846332|gb|EGF95896.1| recF [Brevundimonas diminuta ATCC 11568]
          Length = 78

 Score = 53.9 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 36/53 (67%)

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
           P+LLLDE  AHLDE +R ALF  +  +  Q FMTGT++ +F +L   A+F+ +
Sbjct: 19  PVLLLDEAPAHLDEARRAALFDEIEALKLQAFMTGTERPLFAALEGRAQFVAV 71


>gi|302336552|ref|YP_003801758.1| DNA replication and repair protein RecF [Spirochaeta smaragdinae
           DSM 11293]
 gi|301633737|gb|ADK79164.1| DNA replication and repair protein RecF [Spirochaeta smaragdinae
           DSM 11293]
          Length = 358

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 149/345 (43%), Gaps = 26/345 (7%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L   ++RN     +  DA     VG+NG GK+N+LEAI  LS G  FR     ++ R G 
Sbjct: 6   LKTYQYRNLKDAEVCLDAPRVFLVGENGQGKSNLLEAIYLLSFGSSFRTRRDQELIRRGC 65

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI-SWLVPS 128
                    + G     DIS  L  ++  + + ++++   +    EL   +RI   +V  
Sbjct: 66  GEL-----ALHGKTAEHDISFLLSGKNG-TTKSIKLDGKPVTDRKEL---VRIFPAIVFC 116

Query: 129 MDRI-FSGLSMERRR-FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
            D I F   S ERRR F D+ +   +P     +  + ++++ RN  L E   D       
Sbjct: 117 HDDISFVNGSPERRRWFFDQTMSLHEPLFIDTLRSYRKILKLRNMALKEDRRD--LLDVY 174

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSF--CAL 243
           + Q+A  G++I   R E I   ++            H K+S L G +   +  S+  C  
Sbjct: 175 DIQLARAGMEIQEKRREAIEGFNTTFSSL-------HEKVSGLEGEMKIAYRPSWKGCKG 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E+    L   R+ D   + +  GPHR D      +     +  STG+ +++ + + +  
Sbjct: 228 EEDVGVLLHRRRESDLEMKTSGSGPHR-DRFAFLLEGRDFSSIASTGQLRLLSLLLRVGQ 286

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           AR      G  P+LLLD++   LD  +R      + +   QIF T
Sbjct: 287 ARFFYEKCGRRPVLLLDDVLLELDPRRRQRFLGTLPE-ADQIFFT 330


>gi|88807865|ref|ZP_01123376.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. WH 7805]
 gi|88787904|gb|EAR19060.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. WH 7805]
          Length = 345

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 150/334 (44%), Gaps = 20/334 (5%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
            +G NG+GK+N+LE++  L   R  R +  AD+    +P      + ++  E      ++
Sbjct: 1   MIGSNGIGKSNLLESVELLGSLRSHRSSQDADLIHWDAPRALLKASCMDETE------VE 54

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           LE R     +  +   V+ R +D +   LR          +  G    RR +LDR+V  +
Sbjct: 55  LELRRRGGRQARRNGKVLQRQLDLIGP-LRCVGFSALDLHLVRGEPALRRSWLDRVVLQL 113

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-----CSSIEAQMAELGVKINIARVEMIN 206
           +P +   +  + RL+R R++    G  ++++       S + QMA +  +I+  R   + 
Sbjct: 114 EPIYAELIGRYNRLLRQRSQFWRRGGGNNTFEHQALLDSFDNQMALVCTRIHRRRRRALL 173

Query: 207 ALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            L  L   +  + +  H +L L       L+G+  +    L  E  ++L   R  +    
Sbjct: 174 RLEPLAAAWQSRLSQGHEQLELRYSPGSVLEGEEAEEPWRLAIE--QQLHRQRGEEERLG 231

Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
              +GPHR D I    +  +    GS+G+Q+ +++ + LA   L+    G  P+LLLD++
Sbjct: 232 SCRVGPHR-DEIDMLLNGTVARRFGSSGQQRTLVLALKLAELELVGELCGHPPLLLLDDV 290

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
            A LD  ++ AL   V D   Q  ++ T    F+
Sbjct: 291 LAELDPQRQLALLEAVGDT-HQCLVSATHLDAFE 323


>gi|315170509|gb|EFU14526.1| recombination protein F domain protein [Enterococcus faecalis
           TX1342]
          Length = 126

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 2/99 (2%)

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
            + RK +     T +GPHR DL+     + +   +GS G+Q+   + I LA   L+ + T
Sbjct: 1   MNNRKRELFKANTFLGPHRDDLLFIVNGQNVQ-TYGSQGQQRTTALSIKLAEIDLMHSET 59

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           G  P+LLLD++ + LD +++  L   + +   Q F+T T
Sbjct: 60  GEYPVLLLDDVMSELDNERQIHLLETI-EGKVQTFLTTT 97


>gi|227494191|ref|ZP_03924507.1| recombination protein F [Actinomyces coleocanis DSM 15436]
 gi|226831925|gb|EEH64308.1| recombination protein F [Actinomyces coleocanis DSM 15436]
          Length = 399

 Score = 53.1 bits (126), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 79/376 (21%), Positives = 155/376 (41%), Gaps = 42/376 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +++FR+Y    +      T+ +G NG GKTN++EAI++L+     R  +   + R
Sbjct: 3   VSHLALNDFRSYKETLIELKPGITVLLGYNGQGKTNVIEAIAYLAHLSSHRVNADTALVR 62

Query: 67  I---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               G     +   R +  +   +  +++E    ++ R  ++N    +  D L + +++ 
Sbjct: 63  YPQNGENPPAAAVIRAKLHKAQRERILEIEIVKGKANRA-RLNRAPAKPRDLLGE-IKVI 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    +  G    RR FLD +   + P +     D+E++++ R  LL +        
Sbjct: 121 VFAPEDLNLVKGDPAGRRHFLDSIATQLWPSYGVVKADYEKVLKQRASLLKQ------LG 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLI------MEYVQKENFPHIKLSLTGFLD---- 233
            S+ A M      + I    +IN  S LI      ++ + K      K+   G  +    
Sbjct: 175 KSLRAGMKPDYAMLEIWDQPLINYASQLISLRLKLLKMLTKPANEAHKIVANGVKELRLE 234

Query: 234 ---------GKFDQSFCALKEEYAKKLFDGRKMDSMSRR------TLIGPHRSDLIVDYC 278
                    G+ D +  A  +  A ++   + ++S+          L+GPHR DL +   
Sbjct: 235 YVNSLAEYSGEVDVNKLATDDIEAYQVLMKQVLESLRSAEVIRGVNLLGPHRDDLDLWLD 294

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA----PILLLDEISAHLDEDKRNAL 334
           +  +     S GE   V + + L    ++ +         PIL+LD++ + LD  +R AL
Sbjct: 295 ELPVK-GFASHGESWSVALALRLGCFEILCSEDYLGAVETPILILDDVFSELDGKRRKAL 353

Query: 335 FRIVTDIGSQIFMTGT 350
              ++    Q+ +T  
Sbjct: 354 LEAISG-AEQVIITAA 368


>gi|296105500|ref|YP_003617200.1| DNA replication and repair protein RecF [Legionella pneumophila
           2300/99 Alcoy]
 gi|295647401|gb|ADG23248.1| DNA replication and repair protein RecF [Legionella pneumophila
           2300/99 Alcoy]
          Length = 309

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 101/215 (46%), Gaps = 22/215 (10%)

Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIEAQMAELGV 195
           RR  LD  +F +   + +   D++R++  RN LL    T  +F   W    + Q+++L  
Sbjct: 85  RRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHF-IPW----DQQLSQLAN 139

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
           +++ AR +          + +   +  +I  ++  +  G   ++     EE  +K FD  
Sbjct: 140 QLDKARNDYFLQWQPKFYQVL--SDLTNISCTIE-YYKGWDRKNAGQNMEELLQKSFDS- 195

Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFA 314
             D     T  GPH++DLI++   +   + H  S G+QK++L+ + LA  +L+       
Sbjct: 196 --DKNKLYTQYGPHQADLIINI--EQYRVKHTLSRGQQKIILIALKLAQGQLLDKDC--- 248

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
            + L+D+++A LD+  +  L + +T    Q  +T 
Sbjct: 249 -LYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITN 282


>gi|1790873|gb|AAB41128.1| RecF [Clostridium acetobutylicum ATCC 824]
          Length = 205

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 23/191 (12%)

Query: 169 RNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
           RN +L  + + ++   S  + Q+++ G  +  +R++ +N L+       +K    H  ++
Sbjct: 3   RNIMLRNKKFLNNDMISVYDEQLSKFGSSLIESRIKYLNKLN-------EKGKIIHSDIT 55

Query: 228 LTGFLDGKFDQSFCAL-----KEEYAKKLF----DGRKMDSMSRRTLIGPHRSDLIVDYC 278
                 GK +  F  L     +E  +++LF    D  K D     T +GPHR D  +   
Sbjct: 56  -----KGKEEIEFTYLTHVKGRENISEELFSLFKDSYKRDVEKGNTSVGPHRDDFSIK-I 109

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           +     + GS G+Q+  ++ I  A  ++I   +   P+LLLD++ + LDE ++  +   +
Sbjct: 110 NGIDARSFGSQGQQRTSVLTIKFASIQIIKEISSETPVLLLDDVLSELDESRQEYILNSL 169

Query: 339 TDIGSQIFMTG 349
             I + I  TG
Sbjct: 170 EGIQTLITCTG 180


>gi|113953191|ref|YP_729686.1| recombination protein F [Synechococcus sp. CC9311]
 gi|113880542|gb|ABI45500.1| DNA replication and repair protein RecF [Synechococcus sp. CC9311]
          Length = 345

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 151/335 (45%), Gaps = 22/335 (6%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI- 90
            +G NGVGK+N+LE++  L   R  R +   D+       + ++ A ++     AD  I 
Sbjct: 1   MIGSNGVGKSNLLESVELLGSLRSHRSSQDGDLIH-----WDASRALLKAT--CADQQIL 53

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           +LE R  R  R  + N   ++   +L   LR          +  G    RR++LDR+V  
Sbjct: 54  ELELRR-RGGRQAKRNGKSLQRQLDLIGPLRCVGFSALDLHLVRGEPALRRQWLDRVVLQ 112

Query: 151 IDPRHRRRMIDFERLMRGRNRL-----LTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
           ++P +   +  + RL+R R +      L+ G    +   S + QMA +  +I+  R+  +
Sbjct: 113 LEPVYADLISRYGRLLRQRAQFWRRGGLSSGMEPQALLESFDTQMALVSTRIHRRRLRAL 172

Query: 206 NALSSLIMEYVQK--ENFPHIKL--SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             L  L   +  +  E   H++L  S    L G+  +    L  E  ++L + R  +   
Sbjct: 173 ARLEPLAAVWQDRLSEGREHLQLGYSPGSALIGEEQEESWRLSIE--QQLREQRSEEERL 230

Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
               +GPHR D I    +       GS G+Q+ +++ + +A  +L+    G  P+LLLD+
Sbjct: 231 GSCRVGPHR-DEIEMRINGTAARRFGSAGQQRTLVLALKMAELQLVGELCGEPPLLLLDD 289

Query: 322 ISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + A LD  ++ AL   V +   Q  ++ T    F+
Sbjct: 290 VLAELDPTRQLALLEAVGE-NHQCLVSATHLDAFE 323


>gi|323140853|ref|ZP_08075766.1| RecF/RecN/SMC N-terminal domain protein [Phascolarctobacterium
          sp. YIT 12067]
 gi|322414591|gb|EFY05397.1| RecF/RecN/SMC N-terminal domain protein [Phascolarctobacterium
          sp. YIT 12067]
          Length = 438

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 8/95 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGF----RR 58
          ++I+ L +  FR Y  L + F+ + T+ VG+NG GKT I +A++  L P  R F    R+
Sbjct: 1  MQIERLRLKNFRCYDELDIAFEPKLTVIVGENGKGKTAIFDALAIALEPYLRSFDASGRQ 60

Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE 93
           +  DV R+  P +      ++GME    + IKLE
Sbjct: 61 ITPQDVRRV--PVYKKDMRHIDGMECHYPVEIKLE 93


>gi|229100793|ref|ZP_04231612.1| DNA replication and repair protein recF [Bacillus cereus Rock3-28]
 gi|228682622|gb|EEL36680.1| DNA replication and repair protein recF [Bacillus cereus Rock3-28]
          Length = 183

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 3/136 (2%)

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + +
Sbjct: 45  LSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALSL 103

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDSL 358
            LA   LI +     PILLLD++ + LD+ +++ L   +   + + +  T  D    ++L
Sbjct: 104 KLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGRVQTFVTTTSVDGIEHETL 163

Query: 359 NETAKFMRISNHQALC 374
            + AK + ++N    C
Sbjct: 164 KD-AKTIHVTNGTVDC 178


>gi|153831484|ref|ZP_01984151.1| recF protein [Vibrio cholerae 623-39]
 gi|148873035|gb|EDL71170.1| recF protein [Vibrio cholerae 623-39]
          Length = 185

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 5/167 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +   
Sbjct: 6   LVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNEC 65

Query: 70  PSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              F    R+      +D   + + +  + D S   ++I     + + +L + L +  + 
Sbjct: 66  SELF-VHGRICEHSLSSDQFELPVGINKQRDGSTE-VKIGGQTGQKLAQLAQILPLQLIH 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           P    + +    +RR F+D  VF  +P        F+RL + RN LL
Sbjct: 124 PEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALL 170


>gi|144898157|emb|CAM75021.1| Recombinational DNA repair ATPase (RecF [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 71

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 36/50 (72%)

Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
           DE+ AHLDE +R ALF  +  + +Q +MTGTD+S+F  L + A+F R+++
Sbjct: 15  DEVVAHLDETRRLALFDELAGLNAQSWMTGTDESMFAGLGDRAQFFRVAD 64


>gi|213646832|ref|ZP_03376885.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 258

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 114/259 (44%), Gaps = 13/259 (5%)

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL   + +  + P    + +G    RR FLD   F  +        + +RL++ RN  
Sbjct: 6   IAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAA 65

Query: 173 LTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           L +   ++       + ++  L  +I+  R E  +A++  + +  Q +  P   L+ + F
Sbjct: 66  LRQVSRYEQ--LRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-F 121

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
             G   ++      +YA  L    + D M   T  GPH++D  +   D A      S G+
Sbjct: 122 QRGWEKET------DYADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQ 174

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-T 350
            K+++  + LA    ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  +
Sbjct: 175 LKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAIS 234

Query: 351 DKSVFDSLNETAKFMRISN 369
            + V D  +E +K   +  
Sbjct: 235 AEHVIDMSDENSKMFTVEK 253


>gi|167508523|gb|ABZ81468.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
          Length = 289

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 113/261 (43%), Gaps = 28/261 (10%)

Query: 87  DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146
           + ++ LE    R+ +  ++N   +R   E+   LR     P    +  G   ERRR+LD 
Sbjct: 28  ECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDD 86

Query: 147 MVFAIDPRHRRRMIDFERLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELG 194
           +     P       D+++++R R  LL            G  D+   W    ++++AE G
Sbjct: 87  LATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYG 142

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAK-K 250
            ++  AR++++N L+  + E   +   P  + +  G+   L         A   +Y +  
Sbjct: 143 AQLMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAA 201

Query: 251 LFDG---RKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           L  G   R+   M R   L+GPHR DL + +  + +     S GE   + + + LA   L
Sbjct: 202 LLSGLAARRDAEMERGMCLVGPHRDDLEL-WLGERVAKGFASHGESWSLALSLRLAAYEL 260

Query: 307 ISNTTGFAPILLLDEISAHLD 327
           +       P+LLLD++ A LD
Sbjct: 261 LRADESD-PVLLLDDVFAELD 280


>gi|148651821|ref|YP_001278914.1| DNA replication and repair protein RecF [Psychrobacter sp. PRwf-1]
 gi|148570905|gb|ABQ92964.1| DNA replication and repair protein RecF [Psychrobacter sp. PRwf-1]
          Length = 459

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 120/280 (42%), Gaps = 26/280 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I + RN  S+ +    Q  +FVG NG GKT++LE++  LS G+ FR   +    R  S
Sbjct: 5   LSIHQLRNLHSVNIKV-GQCNVFVGANGSGKTSLLESLYLLSRGKSFR---HHQPKRYIS 60

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
                     +   G    S+ ++   D S   L+++   + V   L K L    + PS 
Sbjct: 61  HHAAHATVHAKFANG---SSMAIQKAQDAST-ILRLDQQTVYVQSALAKQLPTLLIDPSS 116

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFD-------SS 181
             +    S  RR+ LD + F + P    + + ++RL++ RN +L + GY         ++
Sbjct: 117 MDVLEIGSSSRRQLLDWITFHVKPGFHAQWLAYQRLLKQRNTILRQSGYLSDYQRQELAA 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           W   + A  A L         E    L + ++E +  +  P I+L  +   +        
Sbjct: 177 WDKGL-ANHAALITHYRHEAFEEWQPLFNQLIEQLLPDYAPFIQLRFSAGYNTDL----- 230

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
            L E   ++L      D  +  T +G HR+D+ V + + A
Sbjct: 231 PLDELLQQRL----AQDFQTGYTRVGCHRADIQVLWLEDA 266



 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 29/46 (63%)

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           P++LLD+I+A LDE   + L + ++++  QIF+T  D  +   + +
Sbjct: 394 PVVLLDDITAELDERALSILLKTLSELSCQIFITSLDGDIMPQIKQ 439


>gi|313621667|gb|EFR92455.1| DNA replication and repair protein RecF [Listeria innocua FSL
           S4-378]
          Length = 152

 Score = 50.1 bits (118), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D        +  
Sbjct: 11  FRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFI-----MWEK 65

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A++EG       ++ LE    +  +  ++N +  + + +   +L +    P    +  
Sbjct: 66  EEAKMEGRVVKRGQTVPLELAITQKGKRAKVNHMEQKKLSQYVGNLNVVIFAPEDLSLVK 125

Query: 135 GLSMERRRFLDRMVFAIDP 153
           G    RRRFL+  +  + P
Sbjct: 126 GAPGVRRRFLNMEIGQMQP 144


>gi|332976001|gb|EGK12872.1| DNA replication and repair protein RecF [Psychrobacter sp.
           1501(2011)]
          Length = 449

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 123/294 (41%), Gaps = 29/294 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I   RN  ++ +    Q  +FVG NG GKT++LE++  LS G+ FR           +
Sbjct: 5   LSIHHLRNLQAVHIPV-GQCNVFVGANGSGKTSLLESLYLLSRGKSFRHHQPKRYISHHA 63

Query: 70  P--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
           P  +  + FA        +  S+ ++   D S   ++++   + V   L K L    + P
Sbjct: 64  PHTTVHAKFA--------SGSSMAIQKAQDAS-SIMRLDQQAVYVQSALTKQLPTLLIDP 114

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDSSWC 183
           S   I    S  RR+ LD + F + P    + + ++RL++ RN LL +      +     
Sbjct: 115 SSMDILEIGSGSRRQLLDWITFHVKPGFHPQWLSYQRLLKQRNALLKQSPRLSDYQRKEL 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF--- 240
           ++ +  +A     I   R +       L  + + K+  P    +   F+  +F   +   
Sbjct: 175 AAWDKGLANHAALITHYRQQAFEEWQPLFNDLL-KQLLP----AYAPFIQLRFSAGYNTE 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQK 293
             L E   ++L      D  S  T IG HR+D+ V +  D+A       T E K
Sbjct: 230 IPLDELLQQRL----AQDCQSGYTRIGCHRADVQVLWVEDEAARQQVNQTSENK 279



 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           Q  +L G+   +A  I N  G  P++LLD+I+A LDE   + L + ++ +  Q+F+T  D
Sbjct: 363 QLPLLAGMEANNAVSIGNDEGL-PLVLLDDITAELDERALSILLKSLSQLSCQVFITSLD 421

Query: 352 KSVF 355
             + 
Sbjct: 422 DDIM 425


>gi|87124943|ref|ZP_01080790.1| RecF protein [Synechococcus sp. RS9917]
 gi|86167263|gb|EAQ68523.1| RecF protein [Synechococcus sp. RS9917]
          Length = 344

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 69/292 (23%), Positives = 122/292 (41%), Gaps = 18/292 (6%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
            +G NGVGK+N+LEA+  L   R  R +   D+       +  + A +  M    D  ++
Sbjct: 1   MIGRNGVGKSNLLEAVELLGSLRSHRASQDQDLI-----HWDQSRAVLRAMAAEQD-QLE 54

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           LE R     +  +   V+ R +D L   LR         ++  G    RR++LDR+V  +
Sbjct: 55  LELRRKGGRQARRNGRVLERQLD-LIGPLRCVGFSALDLQLVRGEPALRRQWLDRVVLQL 113

Query: 152 DPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           +P +   +  + RL+R R +L     T            + QMA +  +I+  R   +  
Sbjct: 114 EPVYGDLISRYGRLLRQRAQLWRRQSTATPEREQLLEVFDQQMALVSTRIHRRRRRALAR 173

Query: 208 LSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
           L  L   +  + +  H  L L       L+G  +++    ++  A +L   R  ++    
Sbjct: 174 LQPLAAAWQHQLSDGHEALELRYEAGSRLEG--EEAEEPWRQAIAAQLLAQRAEEARLGS 231

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
             +GP R D I    D        S G+Q+ +++ + LA  +L+    G  P
Sbjct: 232 CRVGPQR-DEIALMLDGIAARRFASAGQQRTLVLALKLAELQLVQELWGEPP 282


>gi|116072584|ref|ZP_01469850.1| RecF protein [Synechococcus sp. BL107]
 gi|116064471|gb|EAU70231.1| RecF protein [Synechococcus sp. BL107]
          Length = 353

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 132/294 (44%), Gaps = 20/294 (6%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
           + +G NG+GK+N+LEA+  L   R  R +   D+ +   P      A +    G  D  +
Sbjct: 9   LVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWDRP-----LALLRADVGDGD-RL 62

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           +LE R     +  +   V+ R +D +     I +    +D +  G    RR++LDR+V  
Sbjct: 63  ELELRRRGGRQARRNGKVLDRQLDLIGPLRCIGFSALDLD-LVRGEPALRRQWLDRVVLQ 121

Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI----EAQMAELGVKINIARVEMIN 206
           ++P +   +  + RL+R R++L      +++  S +    + QMA +  +I+  R   ++
Sbjct: 122 LEPVYADLISRYTRLLRQRSQLWRSHRQNTAERSGLLDAFDVQMALISTRIHRRRRRALH 181

Query: 207 ALSSLIMEYVQ-----KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            L  +   +       KE    ++      LDG+  +    L  E  ++L + R+ +   
Sbjct: 182 RLEPIAQRWQSHLSSGKERL-ELRYQPGSRLDGEEAEEPWRLAIE--EQLRNQREDEERL 238

Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
               +GPHR D I     ++     GS G+Q+ +++G+ LA   L+    G  P
Sbjct: 239 GNCRVGPHR-DEINMVLGESPARRFGSAGQQRSLVLGLKLAELELVKELCGEPP 291


>gi|33863982|ref|NP_895542.1| recombination protein F [Prochlorococcus marinus str. MIT 9313]
 gi|51316349|sp|Q7V559|RECF_PROMM RecName: Full=DNA replication and repair protein recF
 gi|33635566|emb|CAE21890.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9313]
          Length = 365

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 131/312 (41%), Gaps = 23/312 (7%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           +RNY+ L+L       + +G NG+GK+N+LEAI  L   R  R +S  D+          
Sbjct: 4   YRNYSRLQLELTENRLLVIGPNGIGKSNLLEAIELLGSLRSHRASSDQDLIHWEEQRAL- 62

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHLRISWLVPSMDRI 132
                  +  +AD + KLE    R        +   + R +D +     + +    ++ +
Sbjct: 63  -------LRAIADDTEKLELELRRQGGRQARRNGKTLTRQLDLIGPLRCVGFSALDLN-L 114

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----DSSWCSSIE 187
             G    RR++LDR+V  ++P +   +  F +L+R R++L  +          S   + +
Sbjct: 115 VRGEPALRRQWLDRVVQQLEPIYSDLISRFNKLLRQRSQLWRQWRHIPIQERDSLLDAFD 174

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT----GFLDGKFDQSFCAL 243
            QMA +  +I+  R   +  L  L   + +  +    +L L       L+G+  +    L
Sbjct: 175 VQMALVSTRIHRRRSRALARLEPLAARWQETLSKHKERLRLDYQPGSQLEGEEAEEPWRL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             E   +L   R  +       IGPHR ++ +   D       GS G+Q+ V++ + LA 
Sbjct: 235 AIE--TQLLGQRSEEERLGSCRIGPHRDEVRLLLNDSEAR-RFGSAGQQRTVVLALKLAE 291

Query: 304 ARLISNTTGFAP 315
             L+    G  P
Sbjct: 292 LELVGELCGEPP 303


>gi|291520351|emb|CBK75572.1| hypothetical protein CIY_30610 [Butyrivibrio fibrisolvens 16/4]
          Length = 94

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          IK + +  FRNY SL + FD   TI  GDN  GKTNILEA ++LS
Sbjct: 3  IKSIELENFRNYESLNINFDEHTTILFGDNAQGKTNILEA-AYLS 46


>gi|309805927|ref|ZP_07699959.1| DNA replication and repair protein RecF [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167703|gb|EFO69850.1| DNA replication and repair protein RecF [Lactobacillus iners
           LactinV 03V1-b]
          Length = 246

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 9/203 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++ +   
Sbjct: 6   LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    A + G     +I   L+       +   IN +  + +      +      P  
Sbjct: 63  --FNMKIAGIHGTLCKRNIRFDLKLLISNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D     I+  +   +  + ++++ RN  L    ++   D  + + 
Sbjct: 121 LSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180

Query: 186 IEAQMAELGVKINIARVEMINAL 208
           +  Q+A L  ++   RV  ++ L
Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL 203


>gi|392776|gb|AAC43047.1| RecF protein [Caulobacter crescentus CB15]
          Length = 67

 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          L +++FR+Y   RL    +     G NG GKTN+LEAIS LSPG+ 
Sbjct: 20 LTLADFRSYERARLETGGRSVYLFGANGAGKTNLLEAISLLSPGKA 65


>gi|309804875|ref|ZP_07698937.1| DNA replication and repair protein RecF [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165814|gb|EFO68035.1| DNA replication and repair protein RecF [Lactobacillus iners
           LactinV 09V1-c]
          Length = 241

 Score = 48.9 bits (115), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 9/203 (4%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++ +   
Sbjct: 6   LTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKELIK--- 62

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
             F    A + G     +I   L+       +   IN +  + +      +      P  
Sbjct: 63  --FNMKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAILFSPED 120

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSS 185
             +  G    RRRF+D     I+  +   +  + ++++ RN  L    ++   D  + + 
Sbjct: 121 LSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDPIFLNV 180

Query: 186 IEAQMAELGVKINIARVEMINAL 208
           +  Q+A L  ++   RV  ++ L
Sbjct: 181 LTDQLAGLAAEVVHKRVLYLDLL 203


>gi|167508533|gb|ABZ81473.1| recombination protein F [Mycobacterium avium subsp. avium]
 gi|167508535|gb|ABZ81474.1| recombination protein F [Mycobacterium avium subsp. silvaticum]
          Length = 289

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 27/244 (11%)

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++N   +R   E+   LR     P    +  G   ERRR+LD +     P       D++
Sbjct: 44  RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103

Query: 164 RLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSL 211
           +++R R  LL            G  D+   W    ++++AE G ++  AR++++N L+  
Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYGAQLMAARIDLVNQLAPE 159

Query: 212 IMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEY----AKKLFDGRKMDSMSR-R 263
           + E   +   P  + +  G+   L         A   +Y           R+   M R  
Sbjct: 160 V-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAEMERGM 218

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
            L+GPHR DL + +  + +     S GE   + + + LA   L+       P+LLLD++ 
Sbjct: 219 CLVGPHRDDLEL-WLGERVAKGFASHGESWSLALSLRLAAYELLRADESD-PVLLLDDVF 276

Query: 324 AHLD 327
           A LD
Sbjct: 277 AELD 280


>gi|157060586|gb|ABV03299.1| RecF [Chlamydia trachomatis]
 gi|157060588|gb|ABV03300.1| RecF [Chlamydia trachomatis]
 gi|157060590|gb|ABV03301.1| RecF [Chlamydia trachomatis]
          Length = 121

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 34  GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE 93
           G N  GKTN+LEA+  LS GR FR +   D  R G+  FF     +E +    ++   L 
Sbjct: 4   GLNAQGKTNLLEALYILSLGRSFRTSRLTDAIRFGASHFF-----IEAVFSHKEVFHTLS 58

Query: 94  TRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
            + D+  + +  +   I  + EL     +         I  G   ERRRFLD ++
Sbjct: 59  IQVDKKGKKILFDGAPITKLSELVGLFPVILFSIKDIAIIEGSPSERRRFLDLLL 113


>gi|157060562|gb|ABV03287.1| RecF [Chlamydia trachomatis]
 gi|157060564|gb|ABV03288.1| RecF [Chlamydia trachomatis]
 gi|157060566|gb|ABV03289.1| RecF [Chlamydia trachomatis]
 gi|157060568|gb|ABV03290.1| RecF [Chlamydia trachomatis]
 gi|157060570|gb|ABV03291.1| RecF [Chlamydia trachomatis]
 gi|157060572|gb|ABV03292.1| RecF [Chlamydia trachomatis]
 gi|157060574|gb|ABV03293.1| RecF [Chlamydia trachomatis]
 gi|157060576|gb|ABV03294.1| RecF [Chlamydia trachomatis]
 gi|157060578|gb|ABV03295.1| RecF [Chlamydia trachomatis]
 gi|157060580|gb|ABV03296.1| RecF [Chlamydia trachomatis]
 gi|157060582|gb|ABV03297.1| RecF [Chlamydia trachomatis]
 gi|157060584|gb|ABV03298.1| RecF [Chlamydia trachomatis]
          Length = 122

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 34  GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE 93
           G N  GKTN+LEA+  LS GR FR +   D  R G+  FF     +E +    ++   L 
Sbjct: 4   GLNAQGKTNLLEALYILSLGRSFRTSRLTDAIRFGASHFF-----IEAVFSHKEVFHTLS 58

Query: 94  TRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
            + D+  + +  +   I  + EL     +         I  G   ERRRFLD ++
Sbjct: 59  IQVDKKGKKILFDGAPITKLSELVGLFPVILFSIKDIAIIEGSPSERRRFLDLLL 113


>gi|291547607|emb|CBL20715.1| Recombinational DNA repair ATPase (RecF pathway) [Ruminococcus sp.
           SR1/5]
          Length = 157

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 19/153 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + ++ FRNY SL + FD    I  GDN  GKTNILEA+      +  + +   ++ R
Sbjct: 3   IESIRLNNFRNYESLEMNFDQGTNILYGDNAQGKTNILEAVYLAGTSKSHKGSKDREMIR 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                F +  + +  M    D+S K++   R +++ + + IN + IR   EL   L +  
Sbjct: 63  -----FENEESHIRMMVKKGDLSYKIDMHLRKNKA-KGVAINGLPIRKAREL---LGVVN 113

Query: 125 LVPSMDRIFSGLSMERRR--------FLDRMVF 149
           LV  + RI     M+R R        F+  MVF
Sbjct: 114 LVFFLRRILILSRMDREREDVFWIRSFVSWMVF 146


>gi|167508531|gb|ABZ81472.1| recombination protein F [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 289

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 103/244 (42%), Gaps = 27/244 (11%)

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++N   +R   E+   LR     P    +  G   ERRR+LD +     P       D++
Sbjct: 44  RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103

Query: 164 RLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSL 211
           +++R R  LL            G  D+   W    ++++AE G ++  AR++++N L+  
Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYGAQLMAARIDLVNQLAPE 159

Query: 212 IMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFDG----RKMDSMSR-R 263
           + E   +   P  + +  G+   L         A   +Y +         R+   M R  
Sbjct: 160 V-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAEMERGM 218

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
            L+GPHR DL + +  + +     S GE   + + + LA   L+       P+LLLD++ 
Sbjct: 219 CLVGPHRDDLEL-WLGERVPKGFASHGESWSLALSLRLAAYELLRADESD-PVLLLDDVF 276

Query: 324 AHLD 327
           A LD
Sbjct: 277 AELD 280


>gi|15835875|ref|NP_300399.1| hypothetical protein CPj0340 [Chlamydophila pneumoniae J138]
 gi|8978714|dbj|BAA98550.1| frame-shift with CPj0339 [Chlamydophila pneumoniae J138]
          Length = 214

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 4/185 (2%)

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + Q+ + G  ++I R      LS L  E         + L     L    D S  A+ EE
Sbjct: 28  DEQLVKHGTYLSIQRFLCSQKLSDLSKELWSNNLKEQLALKFKSSLIKNSDISETAVAEE 87

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           + K+L      D     T +GPHR D ++      ++    S G++  +L  + LA    
Sbjct: 88  FHKQLSISLPRDLEWGSTSVGPHREDFLLTMNQMPVS-QFSSEGQKHSLLAILRLAECLY 146

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +  +   +P++ LD+I A LD ++   L      +G Q  +T T   +   L +T+  + 
Sbjct: 147 LKQSHHVSPLVCLDDIHAGLDNERVGQLLDPAPTLG-QTLITSTH--MHGELPKTSLVLS 203

Query: 367 ISNHQ 371
           I N Q
Sbjct: 204 IENAQ 208


>gi|167508541|gb|ABZ81477.1| recombination protein F [Mycobacterium avium subsp.
           paratuberculosis]
 gi|167508543|gb|ABZ81478.1| recombination protein F [Mycobacterium avium subsp.
           paratuberculosis]
          Length = 289

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 24/259 (9%)

Query: 87  DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146
           + ++ LE    R+ +  ++N + +R   E+   LR     P    +  G   ERRR+LD 
Sbjct: 28  ECAVDLEIAAGRANKA-RLNRLPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDD 86

Query: 147 MVFAIDPRHRRRMIDFERLMRGRNRLLTE----------GYFDSSWCSSIEAQMAELGVK 196
           +     P       D+++++R R  LL            G  D+      ++++AE G +
Sbjct: 87  LATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGALDT--LDVWDSRLAEYGAQ 144

Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFD 253
           +  AR++++N L+  + E   +   P  + +  G+   L         A   +Y +    
Sbjct: 145 LMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAALL 203

Query: 254 G----RKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
                R+   + R   L+GPHR DL + +  + +     S GE   + + + LA   L+ 
Sbjct: 204 AGLAARRDAELERGMCLVGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAFELLR 262

Query: 309 NTTGFAPILLLDEISAHLD 327
                 P+LLLD++ A LD
Sbjct: 263 ADESD-PVLLLDDVFAELD 280


>gi|229083319|ref|ZP_04215681.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44]
 gi|228699994|gb|EEL52617.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44]
          Length = 125

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
           TLIGPHR DL      K + +  GS G+Q+   + + LA   LI +     PILLLD++ 
Sbjct: 11  TLIGPHRDDLQFFVNGKNVQV-FGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVL 69

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + LD+ +++ L   +     Q F+T T
Sbjct: 70  SELDDYRQSHLLNTIQG-KVQTFVTTT 95


>gi|167508525|gb|ABZ81469.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
          Length = 289

 Score = 47.8 bits (112), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 27/244 (11%)

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++N   +R   E+   LR     P    +  G   ERRR+LD +     P       D++
Sbjct: 44  RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103

Query: 164 RLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSL 211
           +++R R  LL            G  D+   W    ++++AE G ++  AR++++N L+  
Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYGAQLMAARIDLVNQLAPE 159

Query: 212 IMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFDG----RKMDSMSR-R 263
           + E   +   P  + +  G+   L         A   +Y +         R+   + R  
Sbjct: 160 V-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAELERGM 218

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
            L+GPHR DL + +  + +     S GE   + + + LA   L+       P+LLLD++ 
Sbjct: 219 CLVGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAYELLRADESD-PVLLLDDVF 276

Query: 324 AHLD 327
           A LD
Sbjct: 277 AELD 280


>gi|303231370|ref|ZP_07318104.1| conserved hypothetical protein [Veillonella atypica
          ACS-049-V-Sch6]
 gi|302513966|gb|EFL55974.1| conserved hypothetical protein [Veillonella atypica
          ACS-049-V-Sch6]
          Length = 566

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++++ I  +RN   + L F      FVG+N VGK+N L+ +  +   RGF+ + +ADV R
Sbjct: 5  MEWIKIENYRNLVDIELHFHNDINYFVGENAVGKSNFLDLLEQMMNARGFQESDFADVHR 64


>gi|167508521|gb|ABZ81467.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
          Length = 289

 Score = 47.4 bits (111), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 102/242 (42%), Gaps = 23/242 (9%)

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++N   +R   E+   LR     P    +  G   ERRR+LD +     P       D++
Sbjct: 44  RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103

Query: 164 RLMRGRNRLLTE----------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
           +++R R  LL            G  D+      ++++AE G ++  AR++++N L+  + 
Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALDT--LDVWDSRLAEYGAQLMAARIDLVNQLAPEV- 160

Query: 214 EYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFDG----RKMDSMSRRT-L 265
           E   +   P  + +  G+   L         A   +Y +         R+   + R   L
Sbjct: 161 EKAYQLLAPGSRAASIGYRSSLGAAAAAEVNAGDRDYLEAALLAGLAARRYAELERGVCL 220

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           +GPHR DL + +  + +     S GE   + + + LA   L+       P+LLLD++ A 
Sbjct: 221 VGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAYELLRADES-DPVLLLDDVFAE 278

Query: 326 LD 327
           LD
Sbjct: 279 LD 280


>gi|241518212|ref|YP_002978840.1| hypothetical protein Rleg_5469 [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|240862625|gb|ACS60289.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
          trifolii WSM1325]
          Length = 763

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 3/66 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF--LSPGR-GFRRASY 61
          ++IKF+ +S FR   S  + FD + TIFVG N  GKT+ + A+ +  LSP R   R  + 
Sbjct: 1  MRIKFVEVSNFRKLKSTHIDFDKKTTIFVGANNSGKTSAMVALRYFLLSPNRLALRDITI 60

Query: 62 ADVTRI 67
          A+ T+I
Sbjct: 61 ANWTKI 66


>gi|303229440|ref|ZP_07316230.1| conserved hypothetical protein [Veillonella atypica
          ACS-134-V-Col7a]
 gi|302515976|gb|EFL57928.1| conserved hypothetical protein [Veillonella atypica
          ACS-134-V-Col7a]
          Length = 564

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++++ I  +RN   + L F      FVG+N VGK+N L+ +  +   RGF+ + +ADV R
Sbjct: 3  MEWIKIENYRNLVDVELHFHNDINYFVGENAVGKSNFLDLLEQMMNARGFQESDFADVHR 62


>gi|167508539|gb|ABZ81476.1| recombination protein F [Mycobacterium avium subsp.
           paratuberculosis]
          Length = 289

 Score = 47.0 bits (110), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 27/244 (11%)

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++N   +R   E+   LR     P    +  G   ERRR+LD +     P       D++
Sbjct: 44  RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103

Query: 164 RLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSL 211
           +++R R  LL            G  D+   W    ++++AE G ++  AR++++N L+  
Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYGAQLMAARIDLVNQLAPE 159

Query: 212 IMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFDG----RKMDSMSR-R 263
           + E   +   P  + +  G+   L         A   +Y +         R+   + R  
Sbjct: 160 V-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAELERGM 218

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
            L+GPHR DL + +  + +     S GE   + + + LA   L+       P+LLLD++ 
Sbjct: 219 CLVGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAFELLRADESD-PVLLLDDVF 276

Query: 324 AHLD 327
           A LD
Sbjct: 277 AELD 280


>gi|313893078|ref|ZP_07826655.1| conserved hypothetical protein [Veillonella sp. oral taxon 158
          str. F0412]
 gi|313442431|gb|EFR60846.1| conserved hypothetical protein [Veillonella sp. oral taxon 158
          str. F0412]
          Length = 557

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 9/84 (10%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          IK+++I  +RN A + L F      FVG+N VGK+N L+ +  +    GF    + DV +
Sbjct: 3  IKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIVMECHGFNEHDFTDVHK 62

Query: 67 ---------IGSPSFFSTFARVEG 81
                   +G  ++ S F   EG
Sbjct: 63 PIRIDFELSLGELNYKSMFTPNEG 86


>gi|213021784|ref|ZP_03336231.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 106

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R    +
Sbjct: 8   IKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIRHEQEA 67

Query: 72  FFSTFARVEGMEGLADISIKLETRDDRSVR 101
           F     R++G E    I +  + + D  VR
Sbjct: 68  FV-LHGRLQGEERETSIGLTKDKQGDSKVR 96


>gi|117620939|ref|YP_856566.1| RecF/RecN/SMC family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562346|gb|ABK39294.1| RecF/RecN/SMC family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 556

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 150/358 (41%), Gaps = 54/358 (15%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---------SPG 53
           NR  +  +N+  FR + S+++  ++  T+F+G NG+GKT I++AIS +           G
Sbjct: 68  NRFVLSEINLVNFRRFDSIKVRLESNVTVFIGGNGIGKTTIIDAISKVLSWIVSGIEKEG 127

Query: 54  RGFRRASYADVTRIGSPSFFSTFARVE-GMEGLADISI---KLETRDDRSVRCLQINDV- 108
           +      Y ++       F    A  E G++   + +I   KL T + R    +++  + 
Sbjct: 128 KNGSPIKYQEINNNEQCYFSDVNALFEFGIKTKVNGTISRSKLGTAEKRDSNVVELKSIA 187

Query: 109 -VIRVVDELNKHLRISWLVPSMDR----------IFSGLSMERRRFLDRMVFAIDPRHRR 157
            V RV++ +N      +L  S+ R          I    S+ R+   D    A+D     
Sbjct: 188 NVWRVINSINPINLPIFLCYSIARSHPAKRSNRPIVKEPSLLRKSRFDAYSGALD--GAG 245

Query: 158 RMIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
           ++ DF E  +    +    G+FD      +EAQ+ +L +            LSS+  +++
Sbjct: 246 KIDDFIEWFIELHKKTSNNGFFD---IDLLEAQVRKLKI------------LSSMDADFI 290

Query: 217 QKENFPHIKLSL--TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
           +  +   I LSL      DG+F+ +   ++      +     ++++   T  G   SD +
Sbjct: 291 EMYDQKIIDLSLAKNNMQDGEFENNLKQMRTVVDAVVKVVPSIENIWVETSSG---SDEV 347

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARL------ISNTTGFAPILLLDEISAHL 326
               D  I      +  Q+V+L  +     RL      ISN      I+L+DEI  HL
Sbjct: 348 KVRNDGGIVNFSQLSDGQRVLLSLVADLARRLVMLNPNISNPLEGQGIVLIDEIELHL 405


>gi|238019008|ref|ZP_04599434.1| hypothetical protein VEIDISOL_00870 [Veillonella dispar ATCC
          17748]
 gi|237864492|gb|EEP65782.1| hypothetical protein VEIDISOL_00870 [Veillonella dispar ATCC
          17748]
          Length = 576

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYADVT 65
          IS +RN +   +VFD      +G+N +GKTNILE ++  LS G+ F+ A +AD++
Sbjct: 13 ISNYRNLSGQSMVFDKDLNYIIGENNIGKTNILELLNIILSEGK-FKEADFADLS 66


>gi|167508529|gb|ABZ81471.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
          Length = 289

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 101/242 (41%), Gaps = 23/242 (9%)

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++N   +R   E+   LR     P    +  G   ERRR+LD +     P       D++
Sbjct: 44  RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103

Query: 164 RLMRGRNRLLTE----------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
           +++R R  LL            G  ++      ++++AE G ++  AR++++N L+  + 
Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALET--LDVWDSRLAEYGAQLMAARIDLVNQLAPEV- 160

Query: 214 EYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTL 265
           E   +   P  + +  G+   L         A   +Y        L D R  +      L
Sbjct: 161 EKAYQLLAPGSRAASIGYRSSLGAAAAAEVNAGDRDYLEAALLAGLADRRDAELERGMCL 220

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           +GPHR DL + +  + +     S GE   + + + LA   L+       P+LLLD++ A 
Sbjct: 221 VGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAYELLRADES-DPVLLLDDVFAE 278

Query: 326 LD 327
           LD
Sbjct: 279 LD 280


>gi|167508537|gb|ABZ81475.1| recombination protein F [Mycobacterium avium subsp.
           paratuberculosis]
          Length = 289

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 109/261 (41%), Gaps = 28/261 (10%)

Query: 87  DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146
           + ++ LE    R+ +  ++N   +R   E+   LR     P    +  G   ERRR+LD 
Sbjct: 28  ECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDD 86

Query: 147 MVFAIDPRHRRRMIDFERLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELG 194
           +     P       D+++++R R  LL            G  D+   W    ++++AE G
Sbjct: 87  LATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYG 142

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKL 251
            ++  AR++++N L+  + E   +   P  + +  G+   L         A   +Y +  
Sbjct: 143 AQLMAARIDLVNQLAPEV-EKAYQLLAPGSRAASIGYRSSLGAAASAEVNAGDRDYLEAA 201

Query: 252 FDG-----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
                   R  +      L+GPHR DL + +  + +     S GE   + + + LA   L
Sbjct: 202 LLAGLAAHRDAELERGMCLVGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAFEL 260

Query: 307 ISNTTGFAPILLLDEISAHLD 327
           +       P+LLLD++ A LD
Sbjct: 261 LRADESD-PVLLLDDVFAELD 280


>gi|22036085|dbj|BAC06579.1| hypothetical ATP-binding protein [Vibrio parahaemolyticus]
 gi|209364500|dbj|BAG74739.1| putative nucleotide-binding protein [Vibrio parahaemolyticus]
          Length = 560

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 10/100 (10%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS----------FLSP 52
           N++ +  L + +FR +  LR+ F+ + T+ +G+NG GKT +L +IS              
Sbjct: 70  NKLNLVQLELFDFRKFKHLRISFEPKLTVIIGNNGQGKTALLNSISKTLSWLNANILKED 129

Query: 53  GRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKL 92
           G+G R ++  D+ R     +   F       GL  I ++L
Sbjct: 130 GQGQRLSATRDIRRNSEAPYTDVFTEFSFGSGLKRIPVRL 169


>gi|282850579|ref|ZP_06259958.1| hypothetical protein HMPREF1035_1912 [Veillonella parvula ATCC
          17745]
 gi|282580072|gb|EFB85476.1| hypothetical protein HMPREF1035_1912 [Veillonella parvula ATCC
          17745]
          Length = 555

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          IK+++I  +RN A + L F      FVG+N VGK+N L+ +  +    GF  + + DV +
Sbjct: 3  IKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIIMECHGFIESDFTDVNK 62


>gi|294792205|ref|ZP_06757353.1| hypothetical protein HMPREF0874_00653 [Veillonella sp. 6_1_27]
 gi|294457435|gb|EFG25797.1| hypothetical protein HMPREF0874_00653 [Veillonella sp. 6_1_27]
          Length = 564

 Score = 46.6 bits (109), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          IK+++I  +RN A + L F      FVG+N VGK+N L+ +  +    GF  + + DV +
Sbjct: 12 IKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIIMECHGFIESDFTDVNK 71


>gi|294794069|ref|ZP_06759206.1| hypothetical protein HMPREF0873_00663 [Veillonella sp. 3_1_44]
 gi|294455639|gb|EFG24011.1| hypothetical protein HMPREF0873_00663 [Veillonella sp. 3_1_44]
          Length = 564

 Score = 46.2 bits (108), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          IK+++I  +RN A + L F      FVG+N VGK+N L+ +  +    GF  + + DV +
Sbjct: 12 IKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIIMECHGFIESDFTDVNK 71


>gi|269798340|ref|YP_003312240.1| ATP-dependent endonuclease of the OLD family- like protein
          [Veillonella parvula DSM 2008]
 gi|269094969|gb|ACZ24960.1| ATP-dependent endonuclease of the OLD family- like protein
          [Veillonella parvula DSM 2008]
          Length = 555

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          IK+++I  +RN A + L F      FVG+N VGK+N L+ +  +    GF  + + DV +
Sbjct: 3  IKWMHIENYRNLADVTLSFHNDINYFVGENSVGKSNFLDLLEIIMECHGFIESDFTDVNK 62


>gi|167508527|gb|ABZ81470.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
          Length = 289

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 35/248 (14%)

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++N   +R   E+   LR     P    +  G   ERRR+LD +     P       D++
Sbjct: 44  RLNRSPVRSTREVLGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 103

Query: 164 RLMRGRNRLLTE----------GYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSL 211
           +++R R  LL            G  D+   W    ++++AE G ++  AR++++N L+  
Sbjct: 104 KVLRQRTALLKSLSGARHRGDRGALDTLDVW----DSRLAEYGAQLMAARIDLVNQLAPE 159

Query: 212 IMEYVQKENFPHIKLSLTGFL------------DGKFDQSFCALKEEYAKKLFDGRKMDS 259
           + E   +   P  + +  G+             DG  D    AL    A +    R  + 
Sbjct: 160 V-EKAYQLLAPGSRAASIGYRSSLGVAASAEVNDGDRDYLEAALLAGLAAR----RDAEL 214

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
                L+GPHR DL + +  + +     S GE   + + + LA   L+       P+LLL
Sbjct: 215 ERGMCLVGPHRDDLEL-WLGEQVAKGFASHGESWSLALSLRLAAYELLRADESD-PVLLL 272

Query: 320 DEISAHLD 327
           D++ A LD
Sbjct: 273 DDVFAELD 280


>gi|86159644|ref|YP_466429.1| ATP-dependent OLD family endonuclease [Anaeromyxobacter
          dehalogenans 2CP-C]
 gi|85776155|gb|ABC82992.1| ATP-dependent endonuclease of the OLD family-like protein
          [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 615

 Score = 45.8 bits (107), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRASYADVTR 66
          L ++ FR++    + FD   T+  G+N  GKTN+LEA+  L+P   GR  R     D+TR
Sbjct: 6  LQLTRFRSFRDGTVYFDETLTVLAGENNSGKTNVLEALRLLTPPSDGRVVRWPEPRDITR 65


>gi|332071496|gb|EGI81990.1| DNA replication and repair recF domain protein [Streptococcus
          pneumoniae GA41301]
          Length = 63

 Score = 45.8 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 33/51 (64%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R
Sbjct: 3  LQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHR 53


>gi|320532811|ref|ZP_08033588.1| recombination protein F [Actinomyces sp. oral taxon 171 str.
          F0337]
 gi|320134962|gb|EFW27133.1| recombination protein F [Actinomyces sp. oral taxon 171 str.
          F0337]
          Length = 349

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L++ +FR+Y SL L  +   + FVG NG GKTN++EAI +L+
Sbjct: 3  VSDLSLDDFRSYRSLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLA 47


>gi|319648521|ref|ZP_08002737.1| hypothetical protein HMPREF1012_03776 [Bacillus sp. BT1B_CT2]
 gi|317389600|gb|EFV70411.1| hypothetical protein HMPREF1012_03776 [Bacillus sp. BT1B_CT2]
          Length = 85

 Score = 45.4 bits (106), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 5/75 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I+ + +S +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++ R
Sbjct: 3  IQNITLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIR 62

Query: 67 IGSPSFFSTFARVEG 81
               +   +A++EG
Sbjct: 63 -----WDEDYAKIEG 72


>gi|291333914|gb|ADD93594.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 160

 Score = 45.4 bits (106), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 3/109 (2%)

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVGIFLA 302
           +E++  +L +  + DS  + + +GPHR DL+ D  + K+  I   S GEQK++++   L 
Sbjct: 38  EEDFKNELREVYQKDSEVKFSTVGPHRLDLLYDINNVKSGDIL--SRGEQKLLILLTILG 95

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             + + N      I L+D++ + LDE+       ++ D   Q F++  D
Sbjct: 96  FNQHMHNLGNKHSIFLVDDLPSELDEENFLKCLELILDAPGQKFVSSID 144


>gi|325066319|ref|ZP_08124992.1| DNA replication and repair protein RecF [Actinomyces oris K20]
          Length = 81

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L++ +FR+Y SL L  +   + FVG NG GKTN++EAI +L+     R  +   + R  +
Sbjct: 6  LSLDDFRSYRSLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTALVRRAA 65

Query: 70 P 70
          P
Sbjct: 66 P 66


>gi|188586140|ref|YP_001917685.1| ATP-dependent endonuclease family protein [Natranaerobius
          thermophilus JW/NM-WN-LF]
 gi|179350827|gb|ACB85097.1| ATP-dependent endonuclease family protein [Natranaerobius
          thermophilus JW/NM-WN-LF]
          Length = 586

 Score = 45.4 bits (106), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFR 57
          +I++  + I+ FR      L+F  +HT+FVGDN  GK+ ILEA+   L P R FR
Sbjct: 3  KIRVAKIKINNFRGIKFSELIF-PEHTVFVGDNNSGKSTILEALDLTLGPERLFR 56


>gi|270263187|ref|ZP_06191457.1| transporter [Serratia odorifera 4Rx13]
 gi|270042875|gb|EFA15969.1| transporter [Serratia odorifera 4Rx13]
          Length = 539

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 16/96 (16%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-SPGRGF--RRASYADVTR-------- 66
           +  L L FD QH   VG NGVGKT +L  I+ L  PG G     AS A V +        
Sbjct: 26  FGPLDLTFDQQHCGLVGRNGVGKTRLLRLIAGLDQPGSGHVETHASLAYVAQQPEIAAQI 85

Query: 67  -----IGSPSFFSTFARVEGMEGLADISIKLETRDD 97
                +G    F+  AR+E    LAD   +LE + D
Sbjct: 86  TLAQLLGYGEVFAALARIEQGRPLADDIDRLEGQWD 121


>gi|213857449|ref|ZP_03384420.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 188

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 10/184 (5%)

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + ++  L  +I+  R E  +A++  + +  Q +  P   L+ + F  G   ++      +
Sbjct: 9   DKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFS-FQRGWEKET------D 60

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA    
Sbjct: 61  YADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 119

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365
           ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K  
Sbjct: 120 LTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 179

Query: 366 RISN 369
            +  
Sbjct: 180 TVEK 183


>gi|170590714|ref|XP_001900116.1| SMC proteins Flexible Hinge Domain containing protein [Brugia
          malayi]
 gi|158592266|gb|EDP30866.1| SMC proteins Flexible Hinge Domain containing protein [Brugia
          malayi]
          Length = 1208

 Score = 44.7 bits (104), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          MT  ++IK + I  F++YA  +++  FDAQ     G NG GK+NIL+AI F+
Sbjct: 1  MTAGMRIKRIEIDGFKSYAQRQIIDGFDAQFNAITGLNGSGKSNILDAICFV 52


>gi|300707107|ref|XP_002995776.1| hypothetical protein NCER_101251 [Nosema ceranae BRL01]
 gi|239604988|gb|EEQ82105.1| hypothetical protein NCER_101251 [Nosema ceranae BRL01]
          Length = 871

 Score = 44.7 bits (104), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 6  KIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          KIK L I+ F++Y S  ++ FD+  T  +G NG GK+NIL+A+ F+   + +
Sbjct: 3  KIKSLEITNFKSYKSSHVIPFDSHFTCIIGPNGSGKSNILDAMVFVMTNKPY 54


>gi|313576854|gb|ADR67028.1| hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae]
          Length = 769

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          +T +I ++F+ + +FR    ++L  D + TI VG N  GKT+IL A+  FL+ G  F
Sbjct: 10 LTGQISLRFVELCQFRRLGKVQLEVDPKTTILVGANNSGKTSILAALRHFLADGSPF 66


>gi|254507673|ref|ZP_05119805.1| ATPase [Vibrio parahaemolyticus 16]
 gi|219549370|gb|EED26363.1| ATPase [Vibrio parahaemolyticus 16]
          Length = 583

 Score = 44.3 bits (103), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 4   RIKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAI 47
            +KIK +NI  FRN+ SL L  FD    + VG NG GKT +L+AI
Sbjct: 91  EVKIKEINIENFRNFDSLFLSDFDPNINVIVGTNGAGKTTLLDAI 135


>gi|225011183|ref|ZP_03701644.1| DNA replication and repair protein RecF [Flavobacteria bacterium
           MS024-3C]
 gi|225004693|gb|EEG42654.1| DNA replication and repair protein RecF [Flavobacteria bacterium
           MS024-3C]
          Length = 164

 Score = 43.9 bits (102), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
           + T +G H+ DL  +     I    GS G+QK  L+ + LA    I   +   PILLLD+
Sbjct: 54  QYTSVGIHKDDLQFELEGHPIK-KFGSQGQQKSFLIALKLAQFHFIKEKSNTTPILLLDD 112

Query: 322 ISAHLDEDKRNALFRIVTDIG-SQIFMTGT 350
           I   LD  +   L  +V D    QIF++ T
Sbjct: 113 IFDKLDAQRVAQLLGLVNDHAYGQIFISDT 142


>gi|329765638|ref|ZP_08257212.1| SMC domain-containing protein [Candidatus Nitrosoarchaeum limnia
          SFB1]
 gi|329137882|gb|EGG42144.1| SMC domain-containing protein [Candidatus Nitrosoarchaeum limnia
          SFB1]
          Length = 692

 Score = 43.9 bits (102), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I  + + +F +++  RL F    T+FVG NG GK++I++AI+F   G+  R+++   + R
Sbjct: 2  ITAIELGDFLSHSQTRLEFGNGVTVFVGQNGAGKSSIIDAITFALFGQHTRKSNKGLIKR 61

Query: 67 IGSPSFFSTFARVE 80
           GS      FA+VE
Sbjct: 62 -GSN---QGFAKVE 71


>gi|302335014|ref|YP_003800221.1| hypothetical protein Olsu_0209 [Olsenella uli DSM 7084]
 gi|301318854|gb|ADK67341.1| conserved hypothetical protein [Olsenella uli DSM 7084]
          Length = 520

 Score = 43.9 bits (102), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63
          +KI+ + I+ FR YAS   V     T+FVG N +GK+++LEA+  F + G+G  +   +D
Sbjct: 1  MKIRSVEITNFRGYASETEVAMDDLTVFVGKNDIGKSSVLEALDIFFNDGKGAVKFDKSD 60

Query: 64 VT 65
          + 
Sbjct: 61 IN 62


>gi|284161186|ref|YP_003399809.1| SMC domain protein [Archaeoglobus profundus DSM 5631]
 gi|284011183|gb|ADB57136.1| SMC domain protein [Archaeoglobus profundus DSM 5631]
          Length = 868

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 29/42 (69%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          IK++ I  F+++ S R+ FD    + VG NG GKT+ILEAI+
Sbjct: 3  IKYVEIENFKSHRSSRVEFDRGVNLIVGRNGAGKTSILEAIA 44


>gi|269926523|ref|YP_003323146.1| chromosome segregation protein SMC [Thermobaculum terrenum ATCC
          BAA-798]
 gi|269790183|gb|ACZ42324.1| chromosome segregation protein SMC [Thermobaculum terrenum ATCC
          BAA-798]
          Length = 1181

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
          +KI  L I  F+++++  L+ FD   T  VG NG GK+NILEAI ++   + +   R   
Sbjct: 1  MKINSLKIQGFKSFSNHTLLEFDHGITAIVGPNGSGKSNILEAIRWVLGEQSYSLLRSKK 60

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
            DV   GSP         +   G+A++ I ++  D
Sbjct: 61 SEDVIWAGSPG--------KPRAGMAEVEISIDNHD 88


>gi|298375964|ref|ZP_06985920.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298267001|gb|EFI08658.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 573

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 2/38 (5%)

Query: 13 SEFRNYASLRLVFDAQHTIFV--GDNGVGKTNILEAIS 48
          SEFRN   L L FD+ +  +V  G+NG GKTNILEA+S
Sbjct: 10 SEFRNLEGLNLRFDSTNDTYVIIGNNGTGKTNILEALS 47


>gi|262164060|ref|ZP_06031799.1| hypothetical protein VMA_000501 [Vibrio mimicus VM223]
 gi|262027588|gb|EEY46254.1| hypothetical protein VMA_000501 [Vibrio mimicus VM223]
          Length = 768

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          IK++F+ +S FR    ++L  D + TI VG N  GKT+IL A+  FL+ G  F
Sbjct: 14 IKLRFVELSNFRRLGKVQLNIDEKTTILVGANNSGKTSILAALRHFLADGSPF 66


>gi|238762723|ref|ZP_04623692.1| hypothetical protein ykris0001_8990 [Yersinia kristensenii ATCC
           33638]
 gi|238699028|gb|EEP91776.1| hypothetical protein ykris0001_8990 [Yersinia kristensenii ATCC
           33638]
          Length = 808

 Score = 43.5 bits (101), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
           ++ +I ++F+ + +FR    ++L  D + TI VG N  GKT+IL A+  FL+ G  F
Sbjct: 49  LSGQISLRFVELCQFRRLGKVQLEIDPKTTILVGANNSGKTSILAALRHFLADGSSF 105


>gi|290968541|ref|ZP_06560080.1| hypothetical protein HMPREF0889_1676 [Megasphaera genomosp.
          type_1 str. 28L]
 gi|290781537|gb|EFD94126.1| hypothetical protein HMPREF0889_1676 [Megasphaera genomosp.
          type_1 str. 28L]
          Length = 558

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          IK ++I  +RN   + L F       VG+N +GK++ L  +S +  G+      YADVTR
Sbjct: 3  IKSMHIENYRNLRDVTLHFHESMNYLVGENAIGKSSFLRLLSLICKGQVIPEQDYADVTR 62


>gi|1213060|emb|CAA63915.1| recf [Mycobacterium smegmatis str. MC2 155]
          Length = 155

 Score = 43.5 bits (101), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 250 KLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
           + ++   +D+++RR          L+GPHR DL +   D+       S GE   + + + 
Sbjct: 18  EFYEAALLDALARRRDAELERGVCLVGPHRDDLELRLGDQPAK-GFASHGESWSMALALR 76

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           L    L+  + G  P+LLLD++ A LD  +R AL   V     Q+ +T  
Sbjct: 77  LGAYELLC-SDGVEPVLLLDDVFAELDTSRRRALA-TVAGSAEQVLVTAA 124


>gi|313576872|gb|ADR67045.1| hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae]
          Length = 318

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          ++ +I ++F+ + +FR    ++L  D + TI VG N  GKT+IL A+  FL+ G  F
Sbjct: 10 LSGQISLRFVELCQFRRLGKVQLEIDPKTTILVGANNSGKTSILAALRHFLADGSSF 66


>gi|308450490|ref|XP_003088315.1| hypothetical protein CRE_15840 [Caenorhabditis remanei]
 gi|308248036|gb|EFO91988.1| hypothetical protein CRE_15840 [Caenorhabditis remanei]
          Length = 160

 Score = 43.5 bits (101), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFAPILLLDEI 322
           TL+GPHR DL+++     +   + S GE     + + L  A L+   + G  P++LLD++
Sbjct: 48  TLVGPHRDDLVLELNGLPVK-GYASHGESWSFALALRLGMAVLLRGESAGGDPVILLDDV 106

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
            A LD  +R+ L   V     Q+ +T    +V + + E   + RI 
Sbjct: 107 FAELDTRRRSKLMSAVQSF-EQVIVT---AAVEEDIPEGIAWHRIG 148


>gi|317472421|ref|ZP_07931746.1| DNA replication and repair protein RecF [Anaerostipes sp.
          3_2_56FAA]
 gi|316900141|gb|EFV22130.1| DNA replication and repair protein RecF [Anaerostipes sp.
          3_2_56FAA]
          Length = 130

 Score = 43.5 bits (101), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 33/62 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I+ L +  +RNY  L + F +   I  GDN  GKTNILEA+   +  +  R +   ++ R
Sbjct: 3  IQSLELKNYRNYDRLIIEFSSGTNILYGDNAQGKTNILEAVYLGATTKSHRGSKDKEIIR 62

Query: 67 IG 68
           G
Sbjct: 63 FG 64


>gi|324501951|gb|ADY40863.1| Structural maintenance of chromosomes protein 2 [Ascaris suum]
          Length = 1200

 Score = 43.5 bits (101), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          ++IK + I  F++YA  ++V  FDAQ     G NG GK+NIL+AI F+
Sbjct: 1  MRIKKIEIDGFKSYAQRQVVDGFDAQFNAITGLNGSGKSNILDAICFV 48


>gi|325067218|ref|ZP_08125891.1| DNA replication and repair protein RecF [Actinomyces oris K20]
          Length = 176

 Score = 43.5 bits (101), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 8/151 (5%)

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
           SSL+      E  PH + +     +   D++  A + E A      R++D  +   L+G 
Sbjct: 25  SSLLTHEGHPEPDPHDESAWLAGEETLLDETALATRLESAMGELHAREIDRGA--NLVGA 82

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFA----PILLLDEIS 323
           HR DL + +          S GEQ  + + + LA   ++ ++   +     P+L+LD++ 
Sbjct: 83  HRDDLSL-FLTGLPARGFASHGEQWSLALALRLASYDMLRTDVDAYGGDGEPVLILDDVF 141

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           A LDE +R AL ++V      +     D  V
Sbjct: 142 ASLDEQRRRALAQMVAGAQQVLLTAAVDDDV 172


>gi|153831514|ref|ZP_01984181.1| DNA replication and repair protein RecF [Vibrio cholerae 623-39]
 gi|148873003|gb|EDL71138.1| DNA replication and repair protein RecF [Vibrio cholerae 623-39]
          Length = 154

 Score = 43.5 bits (101), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 58/107 (54%), Gaps = 2/107 (1%)

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
           T  GP+++DL +      +     S G+ K+++  + +A  + ++  TG   I L+D+ +
Sbjct: 43  TFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQGQHLTELTGKQCIYLIDDFA 101

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRISN 369
           + LD  +R  L   +   G+Q+F++  T+  V D L+E++K   +++
Sbjct: 102 SELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSKTFHVAH 148


>gi|27379743|ref|NP_771272.1| hypothetical protein bll4632 [Bradyrhizobium japonicum USDA 110]
 gi|27352896|dbj|BAC49897.1| bll4632 [Bradyrhizobium japonicum USDA 110]
          Length = 520

 Score = 43.1 bits (100), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA 59
          + +K+K L IS FR  A   +V  A HT+ VG N VGK+ + EA+   L P R +RR 
Sbjct: 27 HEVKVKRLTISNFRGVAH-GVVHLAGHTLLVGGNNVGKSTVCEALDLVLGPERLYRRP 83


>gi|167042367|gb|ABZ07095.1| putative RecF/RecN/SMC N terminal domain protein [uncultured
          marine crenarchaeote HF4000_ANIW97M7]
          Length = 686

 Score = 43.1 bits (100), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
          F ++    L FD   T+F+G+NG GK++I+EAI+F   G+  R A   DV R G
Sbjct: 10 FLSHKDTELSFDNGVTVFIGENGAGKSSIIEAITFALFGKTTRGA-IEDVIRDG 62


>gi|171915571|ref|ZP_02931041.1| ATPase [Verrucomicrobium spinosum DSM 4136]
          Length = 435

 Score = 43.1 bits (100), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          ++I  + I  FR    L L FD + T+ VGDNG GKT+IL A+S
Sbjct: 1  MRIVSIQIDNFRGIKHLGLEFDPRFTLLVGDNGSGKTSILSALS 44


>gi|153869104|ref|ZP_01998792.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152074341|gb|EDN71205.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 446

 Score = 43.1 bits (100), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +KI  + I  FR    L L  D Q T+ VG+N  GKT IL+AI+
Sbjct: 1  MKISHITIENFRAIKKLDLPLDPQLTVLVGNNAAGKTTILDAIA 44


>gi|313611868|gb|EFR86327.1| DNA replication and repair protein RecF [Listeria monocytogenes
          FSL F2-208]
          Length = 70

 Score = 43.1 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D
Sbjct: 8  LRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKD 59


>gi|148243191|ref|YP_001228348.1| recombination protein F [Synechococcus sp. RCC307]
 gi|147851501|emb|CAK28995.1| DNA replication and repair protein RecF [Synechococcus sp. RCC307]
          Length = 342

 Score = 43.1 bits (100), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 159/350 (45%), Gaps = 31/350 (8%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
            +G+NG GK+N+LEA+  L+  R  R +   D+ + G  S  S      G E   +++I+
Sbjct: 1   MLGNNGEGKSNLLEAVELLASLRSHRCSQDRDLIQRGETS--SRLKAWVGEEATDELAIE 58

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME--------RRRF 143
           L  +  R V+    N  ++    +L   LR           FS L +         RR +
Sbjct: 59  LRRQGGRRVQ---RNGKLLERHADLIGPLRCV--------GFSALDLSLVRDEPAGRRDW 107

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIARV 202
           LDR+V  ++P +   +    RL+R R++LL     +      + + Q+A +G +++  R 
Sbjct: 108 LDRVVQQLEPVYGELLSRHGRLLRQRSQLLKRQLSNRDELLDAFDHQLAVIGTRLHRRRH 167

Query: 203 EMINALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
             +  L  L   + ++ +    +L L       L+G  D+     ++    +L + R  +
Sbjct: 168 RALKRLEPLAAPWQERLSGGREQLQLLYQPGTQLNGDEDEHV--WQQCLLNQLQEQRPQE 225

Query: 259 SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
           +      +GP R D+ +    +      GS G+Q+ +++ + LA   L+++ +G  P+LL
Sbjct: 226 ARLGYCSVGPQRDDVALLLGGEPARRL-GSAGQQRCLVLALKLAELELVTSLSGVPPLLL 284

Query: 319 LDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAKFMRI 367
           LD++ A LD  ++  L   V + G Q  ++ T  +S      + A+ + +
Sbjct: 285 LDDVLAELDPQRQQLLLEAVGE-GHQCLVSATHLQSCVADWQQRAQLVEV 333


>gi|124023971|ref|YP_001018278.1| recombination protein F [Prochlorococcus marinus str. MIT 9303]
 gi|123964257|gb|ABM79013.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9303]
          Length = 352

 Score = 42.7 bits (99), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 124/305 (40%), Gaps = 41/305 (13%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
           + +G NG+GK+N+LEA+  L   R  R +S  D+                 +  +AD + 
Sbjct: 7   LVIGPNGIGKSNLLEAVELLGSLRSHRASSDQDLIHWEEQRAL--------LRAIADDTE 58

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNKHL--RISWLVPSMDRIFSGLSME--------R 140
           KLE         L++     R      K L  ++  + P     FS L +         R
Sbjct: 59  KLE---------LELRRQGGRQARRNGKTLTRQLDLIGPLRCVGFSALDLNLVRGEPALR 109

Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----DSSWCSSIEAQMAELGV 195
           R++LDR+V  ++P +   +  F +L+R R++L  +          S   + + QMA +  
Sbjct: 110 RQWLDRVVQQLEPIYSDLISRFNKLLRQRSQLWRQWRHIPIQERDSLLDAFDVQMALVST 169

Query: 196 KINIARVEMINALSSLIMEYV-----QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           +I+  R   +  L  L   +      QKE    +       L+G+  +    L  E   +
Sbjct: 170 RIHRRRSRALARLEPLAARWQETLSKQKERL-RLDYQPGSQLEGEEAEEPWRLAIET--Q 226

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
           L D R  +       IGPHR ++ +   D       GS G+Q+ V++ + LA   L+   
Sbjct: 227 LLDQRSEEERLGSCRIGPHRDEVRLLLNDSEAR-RFGSAGQQRTVVLALKLAELELVGEL 285

Query: 311 TGFAP 315
            G  P
Sbjct: 286 CGEPP 290


>gi|148927260|ref|ZP_01810831.1| DNA recombination/replication protein RecF [candidate division
          TM7 genomosp. GTL1]
 gi|147887346|gb|EDK72799.1| DNA recombination/replication protein RecF [candidate division
          TM7 genomosp. GTL1]
          Length = 107

 Score = 42.7 bits (99), Expect = 0.081,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
          L + +FR+Y    +      TI  G NG GKTN+LEA+  L+ G  F RAS  ++ +IG
Sbjct: 5  LRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSF-RASDQELGQIG 62


>gi|313906345|ref|ZP_07839686.1| SMC domain protein [Eubacterium cellulosolvens 6]
 gi|313468809|gb|EFR64170.1| SMC domain protein [Eubacterium cellulosolvens 6]
          Length = 408

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 30/42 (71%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +K + +  FR Y +L + F+++ TI VGDNG GK+ +L+A+S
Sbjct: 3  LKSIKLHNFRCYENLSVDFNSEFTILVGDNGAGKSALLDAVS 44


>gi|84385714|ref|ZP_00988745.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01]
 gi|84379694|gb|EAP96546.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01]
          Length = 842

 Score = 42.7 bits (99), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
           IK+  + ++ FR Y    +      T+ VG+NG GKT+ILEAIS
Sbjct: 420 IKVNQIKLTNFRGYTDFTIPIHESLTVLVGENGAGKTSILEAIS 463


>gi|333030699|ref|ZP_08458760.1| hypothetical protein Bcop_1586 [Bacteroides coprosuis DSM 18011]
 gi|332741296|gb|EGJ71778.1| hypothetical protein Bcop_1586 [Bacteroides coprosuis DSM 18011]
          Length = 522

 Score = 42.7 bits (99), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 9/79 (11%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
          KIK  N   F+N   L L F+    IFVGDN  GK+ IL+AI  ++      R S   V 
Sbjct: 6  KIKLHNFKRFKN---LTLDFNPDINIFVGDNESGKSTILQAIDLVA------RGSRTRVE 56

Query: 66 RIGSPSFFSTFARVEGMEG 84
           IG    F+    +E M+G
Sbjct: 57 NIGLNKLFNIENMLEYMKG 75


>gi|254491212|ref|ZP_05104393.1| DNA replication and repair protein RecF [Methylophaga thiooxidans
           DMS010]
 gi|224463725|gb|EEF79993.1| DNA replication and repair protein RecF [Methylophaga thiooxydans
           DMS010]
          Length = 325

 Score = 42.7 bits (99), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 61/304 (20%), Positives = 135/304 (44%), Gaps = 23/304 (7%)

Query: 53  GRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           GR FR  +   + +       + FAR      +    I L+  D +S   +++N+  ++ 
Sbjct: 2   GRSFRSRALKHLVK-KQQQRLTVFAR-----SMDQTPIGLQY-DLQSGLLIRLNNAPLKR 54

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + +L  HL + ++  +  + F      RRR +D  VF ++         +++ ++ RN  
Sbjct: 55  LSDLAAHLPLQFIPANCHQFFELGPKYRRRMVDWGVFHVEHSFNFHWQSYKKALQQRNAA 114

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTG 230
           + + Y   +  +  +  + + G+KI   R      L  L+ E++   ++  P ++   T 
Sbjct: 115 IRK-YKPCNEIALWDTHLIKHGMKITEFRQ---GYLQQLVKEFLPLFRQLCPELE---TA 167

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHGS 288
               ++ Q +   + ++A  L +  + D     T  G H +D  L +D  D    +   S
Sbjct: 168 SFVLRYQQGWNK-ETDFADYLRENIERDRALGYTRSGAHAADWSLKIDDGDPYEML---S 223

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
            G+QK+  + + +A  +L++        +LL+D++S+ LD   +N +   +  +  Q F+
Sbjct: 224 RGQQKLFFLALSMAQIKLLAAQKEITNSVLLIDDLSSELDWHHQNTVIETLRTLPVQAFI 283

Query: 348 TGTD 351
           + T+
Sbjct: 284 SSTN 287


>gi|332535595|ref|ZP_08411363.1| type I restriction-modification system, specificity subunit S
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034979|gb|EGI71500.1| type I restriction-modification system, specificity subunit S
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 877

 Score = 42.7 bits (99), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 4   RIKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISF 49
           ++KIK L +  +R + S ++ F D+  T+ +G+NGVGK++ILEA + 
Sbjct: 428 QLKIKNLTLKNYRAFESFKMNFSDSNVTVIIGNNGVGKSSILEATAL 474


>gi|162451513|ref|YP_001613880.1| hypothetical protein sce3241 [Sorangium cellulosum 'So ce 56']
 gi|161162095|emb|CAN93400.1| hypothetical protein sce3241 [Sorangium cellulosum 'So ce 56']
          Length = 423

 Score = 42.7 bits (99), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI  L++ +FR + SL L F    T  VG NG GKT+IL+A++ L
Sbjct: 1  MKITRLSLRDFRGFRSLDLDFSPDVTALVGVNGAGKTSILDALALL 46


>gi|303244904|ref|ZP_07331230.1| SMC domain protein [Methanothermococcus okinawensis IH1]
 gi|302484721|gb|EFL47659.1| SMC domain protein [Methanothermococcus okinawensis IH1]
          Length = 997

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYADVT 65
          IK +NI  FR++ + ++ FD   T  +G NG GK++I EA+++    RG     +  D+ 
Sbjct: 3  IKAINIRNFRSHKNTQISFDKGITTIIGHNGSGKSSIFEAMNYALYARGSVSNVNIDDLI 62

Query: 66 RIGSPSFF 73
          + G+  F 
Sbjct: 63 KRGTNQFL 70


>gi|213026882|ref|ZP_03341329.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 134

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 2/125 (1%)

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA   
Sbjct: 6   DYADVLERSFERDRMLTYTAHGPHKADFRI-RADGAPVEDTLSRGQLKLLMCALRLAQGE 64

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
            ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++  + + V D  +E +K 
Sbjct: 65  FLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 124

Query: 365 MRISN 369
             +  
Sbjct: 125 FTVEK 129


>gi|809744|emb|CAA32896.1| recF protein (1 is 2nd base in codon) [Pseudomonas putida]
          Length = 134

 Score = 42.4 bits (98), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 7/104 (6%)

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFL 301
           L+E  A  L   ++M      T  GP R+DL +    + A  I   S G+QK+V+  + +
Sbjct: 33  LQEVLASSLLRDQQMGH----TQAGPQRADLRLRLAGNNAADIL--SRGQQKLVVCALRI 86

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           A   L+S       I L+D++ + LD+  R AL R++ ++  Q 
Sbjct: 87  AQGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQC 130


>gi|302541733|ref|ZP_07294075.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
          53653]
 gi|302459351|gb|EFL22444.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
          53653]
          Length = 536

 Score = 42.4 bits (98), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
          I  +R +    L FD +  I VGDN  GK+ ILEAI     G+   R  Y D+    SP 
Sbjct: 7  IHNYRTFREFELDFDPEMNILVGDNDAGKSTILEAIELGLTGKLRGRPLYQDL----SPY 62

Query: 72 FFSTFARVEGMEGL 85
           F   A  E +  L
Sbjct: 63 LFHQDAVSEWIADL 76


>gi|258645185|ref|ZP_05732654.1| conserved hypothetical protein [Dialister invisus DSM 15470]
 gi|260402534|gb|EEW96081.1| conserved hypothetical protein [Dialister invisus DSM 15470]
          Length = 543

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          I  +R +  +   FD++    VGDN +GK+N L  +  ++ G GFR A + D
Sbjct: 8  IENYRTFQDVTFHFDSRANYIVGDNNIGKSNFLSFLKTVTHGYGFREADFLD 59


>gi|21328235|gb|AAM48482.1| RecF [Listeria monocytogenes]
          Length = 106

 Score = 42.0 bits (97), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 4/95 (4%)

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           HR D +  Y +       GS G+Q+   + I LA   LI   TG  P+LLLD++ + LD+
Sbjct: 1   HRDDSLF-YINGQNVQDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDD 59

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +++ L   +     Q F+T T  S  D  +ET K
Sbjct: 60  YRQSHLLGAIEG-KVQTFVTTTSTSGID--HETLK 91


>gi|161528753|ref|YP_001582579.1| SMC domain-containing protein [Nitrosopumilus maritimus SCM1]
 gi|160340054|gb|ABX13141.1| SMC domain protein [Nitrosopumilus maritimus SCM1]
          Length = 693

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 41/75 (54%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I  + + +F  ++  +L FD   T+FVG NG GK++I++AI+F   G+  R+++   + R
Sbjct: 2  ITSIELGDFLAHSDTKLEFDNGVTVFVGHNGAGKSSIIDAITFALFGQHTRKSNKGLIKR 61

Query: 67 IGSPSFFSTFARVEG 81
            +  +      V G
Sbjct: 62 GANQGYSKVNFSVNG 76


>gi|121594800|ref|YP_986696.1| hypothetical protein Ajs_2459 [Acidovorax sp. JS42]
 gi|120606880|gb|ABM42620.1| conserved hypothetical protein [Acidovorax sp. JS42]
          Length = 606

 Score = 42.0 bits (97), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGR 54
          +K+  L IS FR   S+ L+FD  HT+ VG N VGK+ + EA+   L P R
Sbjct: 1  MKVVRLTISNFRGIKSVELLFDG-HTLMVGSNNVGKSTLCEALDLVLGPDR 50


>gi|221633719|ref|YP_002522945.1| putative chromosome segregation protein [Thermomicrobium roseum DSM
           5159]
 gi|221155554|gb|ACM04681.1| putative chromosome segregation protein [Thermomicrobium roseum DSM
           5159]
          Length = 1187

 Score = 42.0 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 95/238 (39%), Gaps = 49/238 (20%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +  F+++A  + LVFD   T  VG NG GK+N+ EAI+++     G   R   
Sbjct: 3   VRLLRLALLGFKSFADPVELVFDRGITAIVGPNGSGKSNLAEAIAWVLGEQAGSAVRSRR 62

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLET-------------------RDDRSVR 101
             DV   G P   S         G+A++++ LE                    RD  +  
Sbjct: 63  ADDVIFAGGPDRPSL--------GMAEVTLTLEQDGDELGVPFREVSVTRRVFRDGETQY 114

Query: 102 CLQINDVVIRVVDELNKHLRISWLVP---SMDRIFSGLSMERRRFLD------------- 145
            +  +   +R V  +   LR  W++    S+D +      ERR +L+             
Sbjct: 115 LINGSRARLRDVLRIAAILRADWIITRQGSVDDVLEQRPAERRHYLEHAAGLSALRLRQA 174

Query: 146 --RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
             R   A   +H +R+ D  R +      L E    +    ++ A + E  ++++ AR
Sbjct: 175 EARQQLAEAEQHAQRLDDLLRELEPHVHALGEAAQRAREALAVRASLREALLQLSAAR 232


>gi|313828985|gb|EFS66699.1| recombination protein F domain protein [Propionibacterium acnes
           HL063PA2]
          Length = 226

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 84/175 (48%), Gaps = 19/175 (10%)

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-----LDGKF------D 237
           ++A +G ++  AR++ ++A+  L      +E  P   L+   +     L+G +      +
Sbjct: 24  ELATIGAELLSARLDTLSAVMPL-TSAAYREIAPVNDLTTASYKSTIDLEGLWSPPQERE 82

Query: 238 QSFCALKEEYAKKLFDG---RKMDSMSRR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            S    ++E A +  D    R+ D + R  TL+GP R D+I+ +  +     + S GE  
Sbjct: 83  SSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIIL-HIGEMPAKGYASHGESW 141

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V     Q+ +T
Sbjct: 142 SLALALRLGSFQLLRDD-GIEPVLVLDDVFAELDATRRDRLASSVVQ-ADQVLVT 194


>gi|294649512|ref|ZP_06726933.1| chromosome segregation ATPase [Acinetobacter haemolyticus ATCC
          19194]
 gi|292824573|gb|EFF83355.1| chromosome segregation ATPase [Acinetobacter haemolyticus ATCC
          19194]
          Length = 858

 Score = 42.0 bits (97), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|317499297|ref|ZP_07957570.1| DNA replication and repair protein RecF [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|316893466|gb|EFV15675.1| DNA replication and repair protein RecF [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 113

 Score = 41.6 bits (96), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          IK L +  +RNY  L + F +   +  GDN  GKTNILE+I   +  +  R
Sbjct: 3  IKSLELKNYRNYDELSMNFASGTNLLYGDNAQGKTNILESIYLSATTKSHR 53


>gi|303325741|ref|ZP_07356184.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfovibrio sp.
           3_1_syn3]
 gi|302863657|gb|EFL86588.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfovibrio sp.
           3_1_syn3]
          Length = 1178

 Score = 41.6 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSLTGFLDGKF 236
           F  +W +S+    AE G  I +A V+  N L+ L+ E +++EN P  +K +L G+LD K 
Sbjct: 859 FGPTWGNSLFEDAAEYGCGIGLAYVQRRNRLAMLVEEALKEENVPAELKSALQGWLDNKE 918

Query: 237 D 237
           D
Sbjct: 919 D 919


>gi|157060592|gb|ABV03302.1| RecF [Chlamydia trachomatis]
          Length = 96

 Score = 41.6 bits (96), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 24/40 (60%)

Query: 34 GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73
          G N  GKTN+LEA+  LS GR FR +   D  R G+  FF
Sbjct: 4  GLNAQGKTNLLEALYILSLGRSFRTSRLTDAIRFGASHFF 43


>gi|117923322|ref|YP_863939.1| ATP binding protein [Magnetococcus sp. MC-1]
 gi|117607078|gb|ABK42533.1| ATP binding protein [Magnetococcus sp. MC-1]
          Length = 454

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSP 52
          +K+  L +S FR + SL + FD   T+ V  NG GKT IL+AI   L P
Sbjct: 1  MKLNTLTLSNFRCFESLEITFDDYLTVLVAQNGGGKTAILDAIGVALGP 49


>gi|288573630|ref|ZP_06391987.1| SMC domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569371|gb|EFC90928.1| SMC domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 447

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          L ++ FR Y      F  + TI VG+NG GKT IL+AI+ +
Sbjct: 5  LTLNNFRRYEKAHFCFHPKMTILVGENGKGKTTILDAIAVM 45


>gi|289810862|ref|ZP_06541491.1| recombination protein F [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 68

 Score = 41.6 bits (96), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 27/55 (49%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V R
Sbjct: 8  IKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRVIR 62


>gi|162455965|ref|YP_001618332.1| hypothetical protein sce7683 [Sorangium cellulosum 'So ce 56']
 gi|161166547|emb|CAN97852.1| hypothetical protein sce7683 [Sorangium cellulosum 'So ce 56']
          Length = 428

 Score = 41.6 bits (96), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRR 58
          ++I  + +  FR +A+  L  D   T+ VG NG GKT+ L+AI  L       PGR  R 
Sbjct: 1  MRISSIRLQNFRGFAACTLSLDRPLTVLVGVNGAGKTSTLDAIVRLLGVTNRVPGRAKRL 60

Query: 59 ASYADVTR 66
             AD+ R
Sbjct: 61 LVDADIRR 68


>gi|229817970|ref|ZP_04448252.1| hypothetical protein BIFANG_03257 [Bifidobacterium angulatum DSM
           20098]
 gi|229784574|gb|EEP20688.1| hypothetical protein BIFANG_03257 [Bifidobacterium angulatum DSM
           20098]
          Length = 247

 Score = 41.2 bits (95), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 62/238 (26%), Positives = 95/238 (39%), Gaps = 42/238 (17%)

Query: 2   TNRIKIKFLNISEFRNYASLR----LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           T+ IK+  L     R  A L      V   Q    +G NGVGKT + + I       G R
Sbjct: 4   TDIIKVNDLTFGYKRKQAVLEHITFAVPKGQSLAILGYNGVGKTTLFDLIV------GLR 57

Query: 58  R--ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLET-----------RDDRS----- 99
           R  + YA + +   PS    F   E   GL D     E             DD++     
Sbjct: 58  RPWSGYAAINKAFVPSMRDVFQMTE-QGGLIDTMTVRENFKFRKMLFKPKDDDKTFFEAL 116

Query: 100 -----VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR-FLDRMVFAIDP 153
                VR  ++ND + + V +L+  LR          I +G+  +     LD    AIDP
Sbjct: 117 EKNPLVRAFELNDQLDKKVSDLSSGLR------KRVGIVAGMMFDPHVIMLDEPTNAIDP 170

Query: 154 RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
             R  +I++   +R  NR +     D  +C ++  ++  L  K +IA   M++ L+S 
Sbjct: 171 LTRDLLIEYMGRLRADNRTILTITHDLHYCWNVSDRIIVLDHK-HIALDAMLSDLNSF 227


>gi|323701144|ref|ZP_08112819.1| ATPase-like protein, involved in DNA repair [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533746|gb|EGB23610.1| ATPase-like protein, involved in DNA repair [Desulfotomaculum
           nigrificans DSM 574]
          Length = 416

 Score = 41.2 bits (95), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 24/117 (20%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG----------- 53
           +KIK L +  FRN+ +  L  D Q   FVG N  GKT +L A+ +   G           
Sbjct: 1   MKIKKLGVQNFRNHEATELELD-QVNFFVGHNNAGKTTLLAALEWALTGHCLWTDRAGRG 59

Query: 54  ------RGFRRASYA-DVTRIGS-----PSFFSTFARVEGMEGLADISIKLETRDDR 98
                 RG ++A+ + +V  +GS     P       ++ G E  A I   L T ++R
Sbjct: 60  SAELICRGQKQAAVSLEVEGLGSILRSMPPNSLRVGKLTGQEAQASILNSLRTDEER 116


>gi|332187543|ref|ZP_08389280.1| hypothetical protein SUS17_2659 [Sphingomonas sp. S17]
 gi|332012472|gb|EGI54540.1| hypothetical protein SUS17_2659 [Sphingomonas sp. S17]
          Length = 631

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRR 58
          +KI  ++I  FR  +S  LV    H + +GDN  GK+++LEAI   L P R  RR
Sbjct: 1  MKIYAVSIDNFRGISSTTLVL-PDHAVLIGDNNTGKSSVLEAIDLALGPDRLSRR 54


>gi|118581719|ref|YP_902969.1| chromosome segregation protein SMC [Pelobacter propionicus DSM
          2379]
 gi|118504429|gb|ABL00912.1| condensin subunit Smc [Pelobacter propionicus DSM 2379]
          Length = 1176

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 14/100 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
          +KIK L I  F+++A  R+V D Q   T  VG NG GK+NI+++I +       +  R  
Sbjct: 1  MKIKRLEICGFKSFAD-RVVLDFQQGVTGVVGPNGCGKSNIVDSIRWCMGEQSAKNLRGK 59

Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99
          +  DV   GS +            G+A++S+   T D R+
Sbjct: 60 AMEDVIFAGSETRKPL--------GMAEVSLVFSTEDGRA 91


>gi|251793335|ref|YP_003008063.1| RecF/RecN/SMC N domain [Aggregatibacter aphrophilus NJ8700]
 gi|247534730|gb|ACS97976.1| RecF/RecN/SMC N domain, putative [Aggregatibacter aphrophilus
           NJ8700]
          Length = 409

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 19/145 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI +L IS F++  ++ +   +   +  G NG GK+N ++A++FLS            V
Sbjct: 1   MKINYLKISGFKSIQNVEIKDVSSFMVLAGANGTGKSNFVDALAFLS-----------KV 49

Query: 65  TRIGSPSFFSTFARVEGMEGL----ADISIKLETRDDRSVRCLQI----NDVVIRVVDEL 116
             +G     S F  VE + G      +IS K+E   +  V   +I    N+++ R+  E 
Sbjct: 50  IDMGVSKAVSEFGGVENLIGPKHNSGNISYKIEFEIEEQVYQYEISIFLNNLISRISSES 109

Query: 117 NKHLRISWLVPSMDRIFSGLSMERR 141
            K L+   ++   D++   L + + 
Sbjct: 110 LKILKDGQIIFDSDKVREKLEVNQE 134


>gi|296394|emb|CAA50569.1| RecF [Staphylococcus aureus]
          Length = 89

 Score = 41.2 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           +GS G+Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q 
Sbjct: 1   YGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQT 59

Query: 346 FMTGTDKSVFD-SLNETAKFMRIS 368
           F+T T     D  +   AK  RI+
Sbjct: 60  FVTTTSVDGIDHEIMNNAKLYRIN 83


>gi|121583277|ref|YP_973713.1| hypothetical protein Pnap_4907 [Polaromonas naphthalenivorans
          CJ2]
 gi|120596535|gb|ABM39971.1| conserved hypothetical protein [Polaromonas naphthalenivorans
          CJ2]
          Length = 769

 Score = 41.2 bits (95), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          ++  I ++FL   +FR    ++L  D + TI VG N  GKT++L A+  FL+ G  F
Sbjct: 10 VSGDITLRFLEFCQFRRLGKVQLDIDKKTTILVGANNSGKTSVLAALRHFLADGSAF 66


>gi|226228632|ref|YP_002762738.1| putative iron ABC transporter ATP-binding protein [Gemmatimonas
           aurantiaca T-27]
 gi|226091823|dbj|BAH40268.1| putative iron ABC transporter ATP-binding protein [Gemmatimonas
           aurantiaca T-27]
          Length = 276

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 91/215 (42%), Gaps = 35/215 (16%)

Query: 20  SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS---------- 69
           +L L+   QH   VG NG GK+ +L  ++ L  GRG  R    D+ R+ +          
Sbjct: 31  TLPLLHAGQHIALVGPNGAGKSTLLRVLAGLVEGRGSVRFDGFDLLRVSAMQRAQRVAFM 90

Query: 70  PSFFS---TFARVEGMEG---LADISIKLETRDDRSVRCLQINDVVIRVVDELN-KHLRI 122
           P       T + ++G+ G    + +S  +ET +D   R        I V++ +   HL +
Sbjct: 91  PQSLPQDVTLSVLDGLLGALKASPMSPPVETMEDAQQRG-------IAVLERIGIAHLAL 143

Query: 123 SWL--VPSMDRIFSGLSMERRR-----FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
             L  +   +R  +GL+    R      LD    A+D RH+  ++   R +    RL+  
Sbjct: 144 QPLQHLSGGERQLAGLAQAIVREPAMLLLDEPTSALDLRHQVTVMSLARALAHEGRLVIS 203

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
              D +  +    Q+    + ++  RV+ + A ++
Sbjct: 204 VLHDLTLAARWADQL----IVLDGGRVQAMGAPTA 234


>gi|294676583|ref|YP_003577198.1| iron siderophore/cobalamin ABC transporter ATP-binding protein
          [Rhodobacter capsulatus SB 1003]
 gi|294475403|gb|ADE84791.1| iron siderophore/cobalamin ABC transporter, ATP-binding protein
          [Rhodobacter capsulatus SB 1003]
          Length = 248

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 18 YASLRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           A  RL   A   +  VG NG GKT +L+AI+ L+P R  RR   AD+ R
Sbjct: 17 LAPCRLTLAAGEVLALVGPNGAGKTTLLQAIAGLAPERVRRRLGNADLAR 66


>gi|18313677|ref|NP_560344.1| purine NTPase [Pyrobaculum aerophilum str. IM2]
 gi|18161228|gb|AAL64526.1| purine NTPase, probable [Pyrobaculum aerophilum str. IM2]
          Length = 702

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
           S GEQ ++ + I +A AR +    G AP ++LDE + HLDE+ R  +  +V D+ S
Sbjct: 626 SLGEQNLLALSIRVALARAL---LGGAPFMMLDEPTEHLDEEHRRRIVELVRDLTS 678


>gi|310794043|gb|EFQ29504.1| DNA polymerase family B [Glomerella graminicola M1.001]
          Length = 1722

 Score = 41.2 bits (95), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 7/121 (5%)

Query: 101  RCLQINDVVIRVVDELNKHLRISW-LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR-R 158
            RC+   D++     +L+    IS  L+P ++RIF+ + +  R++ D M     P+ +R R
Sbjct: 1540 RCVAPEDLLKDSHSQLDAEYYISKNLIPPLERIFNLVGVNVRQWYDEM-----PKVQRIR 1594

Query: 159  MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
             ID      G N+   E Y +S+ C S   +M   GV  +  + ++ ++L  L M   Q+
Sbjct: 1595 RIDQTLGRGGLNKKTLESYLNSASCISCNVKMQVEGVMCSKCQHDVPSSLYHLQMRLHQE 1654

Query: 219  E 219
            E
Sbjct: 1655 E 1655


>gi|169634134|ref|YP_001707870.1| putative chromosome segregation ATPases [Acinetobacter baumannii
          SDF]
 gi|169152926|emb|CAP01967.1| putative chromosome segregation ATPases [Acinetobacter baumannii]
          Length = 1149

 Score = 41.2 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|325959801|ref|YP_004291267.1| SMC domain-containing protein [Methanobacterium sp. AL-21]
 gi|325331233|gb|ADZ10295.1| SMC domain protein [Methanobacterium sp. AL-21]
          Length = 900

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 29/43 (67%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          I+ L +  F+++   ++ FD   TI +G NG GK++ILEA+SF
Sbjct: 3  IENLEMKNFKSHKDTKIDFDTGITIIMGGNGAGKSSILEAVSF 45


>gi|219666706|ref|YP_002457141.1| ATP-dependent endonuclease of the OLD family-like protein
          [Desulfitobacterium hafniense DCB-2]
 gi|219536966|gb|ACL18705.1| ATP-dependent endonuclease of the OLD family-like protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 601

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I  + +S +RN   + ++F       +G+N +GK+N L  I  +  G+GF    +AD 
Sbjct: 1  MRIFCVKVSNYRNIDGITVIFHPDCNYIIGENNLGKSNFLSLIGTVCAGKGFDEKDFADP 60

Query: 65 TR 66
           +
Sbjct: 61 DK 62


>gi|150401140|ref|YP_001324906.1| SMC domain-containing protein [Methanococcus aeolicus Nankai-3]
 gi|150013843|gb|ABR56294.1| SMC domain protein [Methanococcus aeolicus Nankai-3]
          Length = 994

 Score = 40.8 bits (94), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 7/70 (10%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF--LSPGRGFRRASYADV 64
          IK +NI  FR++++  + F    T  +G+NG GK++I EA+++   +P    RR   +D 
Sbjct: 3  IKNINIKNFRSHSNTDISFKQGITTIIGENGSGKSSIFEAMNYALFAP----RRIKLSDA 58

Query: 65 TRIGSPSFFS 74
           + G+  FFS
Sbjct: 59 IKRGT-DFFS 67


>gi|260555697|ref|ZP_05827917.1| chromosome segregation protein SMC [Acinetobacter baumannii ATCC
          19606]
 gi|260410608|gb|EEX03906.1| chromosome segregation protein SMC [Acinetobacter baumannii ATCC
          19606]
          Length = 1149

 Score = 40.8 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|193076576|gb|ABO11235.2| putative chromosome segregation ATPase [Acinetobacter baumannii
          ATCC 17978]
          Length = 1149

 Score = 40.8 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|169797011|ref|YP_001714804.1| putative chromosome segregation ATPases [Acinetobacter baumannii
          AYE]
 gi|213156585|ref|YP_002318246.1| chromosome segregation protein SMC [Acinetobacter baumannii
          AB0057]
 gi|215484471|ref|YP_002326706.1| chromosome segregation protein SMC [Acinetobacter baumannii
          AB307-0294]
 gi|301347732|ref|ZP_07228473.1| chromosome segregation protein SMC [Acinetobacter baumannii
          AB056]
 gi|301512480|ref|ZP_07237717.1| chromosome segregation protein SMC [Acinetobacter baumannii
          AB058]
 gi|301594388|ref|ZP_07239396.1| chromosome segregation protein SMC [Acinetobacter baumannii
          AB059]
 gi|332852099|ref|ZP_08433926.1| segregation protein SMC [Acinetobacter baumannii 6013150]
 gi|332867497|ref|ZP_08437650.1| segregation protein SMC [Acinetobacter baumannii 6013113]
 gi|169149938|emb|CAM87832.1| putative chromosome segregation ATPases [Acinetobacter baumannii
          AYE]
 gi|213055745|gb|ACJ40647.1| chromosome segregation protein SMC [Acinetobacter baumannii
          AB0057]
 gi|213988534|gb|ACJ58833.1| chromosome segregation protein SMC [Acinetobacter baumannii
          AB307-0294]
 gi|332729471|gb|EGJ60810.1| segregation protein SMC [Acinetobacter baumannii 6013150]
 gi|332733914|gb|EGJ65059.1| segregation protein SMC [Acinetobacter baumannii 6013113]
          Length = 1149

 Score = 40.8 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|322506975|gb|ADX02429.1| Putative chromosome segregation ATPase [Acinetobacter baumannii
          1656-2]
          Length = 1149

 Score = 40.8 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|184157076|ref|YP_001845415.1| chromosome segregation ATPase [Acinetobacter baumannii ACICU]
 gi|332872652|ref|ZP_08440620.1| segregation protein SMC [Acinetobacter baumannii 6014059]
 gi|183208670|gb|ACC56068.1| Chromosome segregation ATPase [Acinetobacter baumannii ACICU]
 gi|323516842|gb|ADX91223.1| chromosome segregation ATPase [Acinetobacter baumannii
          TCDC-AB0715]
 gi|332739181|gb|EGJ70040.1| segregation protein SMC [Acinetobacter baumannii 6014059]
          Length = 1149

 Score = 40.8 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|239501243|ref|ZP_04660553.1| chromosome segregation ATPase [Acinetobacter baumannii AB900]
          Length = 1149

 Score = 40.8 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|299771369|ref|YP_003733395.1| chromosome segregation protein SMC [Acinetobacter sp. DR1]
 gi|298701457|gb|ADI92022.1| chromosome segregation protein SMC [Acinetobacter sp. DR1]
          Length = 1149

 Score = 40.8 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|209883314|ref|YP_002287171.1| ATP-dependent endonuclease family protein [Oligotropha
          carboxidovorans OM5]
 gi|209871510|gb|ACI91306.1| ATP-dependent endonuclease family protein [Oligotropha
          carboxidovorans OM5]
          Length = 615

 Score = 40.8 bits (94), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA 59
          ++++ L I+ FR  +   + FD  HT+ VG N +GK+ I EA+   L P R FRR 
Sbjct: 1  MRVRRLKITNFRGISQGSVDFDG-HTLLVGGNNIGKSTICEALDLVLGPERLFRRP 55


>gi|325121131|gb|ADY80654.1| putative chromosome segregation ATPase [Acinetobacter
          calcoaceticus PHEA-2]
          Length = 1149

 Score = 40.8 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|293609094|ref|ZP_06691397.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829667|gb|EFF88029.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1149

 Score = 40.8 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|260550984|ref|ZP_05825189.1| chromosome segregation protein SMC [Acinetobacter sp. RUH2624]
 gi|260405932|gb|EEW99419.1| chromosome segregation protein SMC [Acinetobacter sp. RUH2624]
          Length = 1149

 Score = 40.8 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|301162347|emb|CBW21892.1| putative ATP-dependent endonuclease protein [Bacteroides fragilis
          638R]
          Length = 572

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          ++IK +++  +RN  S  + FD      VG+N +GK+NIL  ++ +   RGF    + D
Sbjct: 1  MRIKDISVENYRNLNSATITFDESCNFIVGENNLGKSNILNLLNIIFTRRGFVYDDFND 59


>gi|262280097|ref|ZP_06057882.1| chromosome segregation ATPase [Acinetobacter calcoaceticus
          RUH2202]
 gi|262260448|gb|EEY79181.1| chromosome segregation ATPase [Acinetobacter calcoaceticus
          RUH2202]
          Length = 1149

 Score = 40.8 bits (94), Expect = 0.33,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|322376075|ref|ZP_08050585.1| putative ATP/GTP-binding protein [Streptococcus sp. C300]
 gi|321279025|gb|EFX56068.1| putative ATP/GTP-binding protein [Streptococcus sp. C300]
          Length = 480

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 30/121 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--------------- 51
           I+   I+   NY  + L F    TI++G+NGVGKT IL  + +L                
Sbjct: 4   IEKFKINNLHNYYDVELNFKNDKTIYIGENGVGKTTILSMLYYLLNLNYERLSKYIFESL 63

Query: 52  ----PGRGFRRASYADVTRIGS---------PSFF--STFARVEGMEGLADISIKLETRD 96
                G+   R + +D+T+I S         P +       ++E  E L +  +KLE   
Sbjct: 64  EIKFEGKKSVRITKSDITQINSVIRSRKGRYPKYIVDELINKIEQDENLMNELLKLENST 123

Query: 97  D 97
           D
Sbjct: 124 D 124


>gi|303235228|ref|ZP_07321846.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|302493542|gb|EFL53330.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
          Length = 518

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 4/87 (4%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
          KI+ +N   F++Y    +  + +  I VGDN VGK+++LEAI  +S G   RR     + 
Sbjct: 7  KIRLINFKRFKDYT---ICPNGRLNILVGDNEVGKSSVLEAIELVSSG-NVRRVENIGLD 62

Query: 66 RIGSPSFFSTFARVEGMEGLADISIKL 92
          ++ +      F +    E L ++ I+L
Sbjct: 63 KLMNVESILCFNKNRKYENLPEMIIEL 89


>gi|51244240|ref|YP_064124.1| hypothetical protein DP0388 [Desulfotalea psychrophila LSv54]
 gi|50875277|emb|CAG35117.1| hypothetical protein DP0388 [Desulfotalea psychrophila LSv54]
          Length = 450

 Score = 40.8 bits (94), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 18/82 (21%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +KIK L +  +R + +  + FD Q T+ V  NG GK+ IL+A++                
Sbjct: 15 MKIKRLTLHNYRRFTNFEIDFDEQLTVLVAKNGEGKSTILDAVA---------------- 58

Query: 65 TRIGSPSFFSTFARVEGMEGLA 86
          T +G   F +   RV G+E  A
Sbjct: 59 TSLG--VFLTRLPRVTGLEPKA 78


>gi|227878888|ref|ZP_03996793.1| DNA repair protein RecN [Lactobacillus crispatus JV-V01]
 gi|256849776|ref|ZP_05555207.1| DNA repair protein [Lactobacillus crispatus MV-1A-US]
 gi|262046525|ref|ZP_06019486.1| DNA repair protein RecN [Lactobacillus crispatus MV-3A-US]
 gi|227861522|gb|EEJ69136.1| DNA repair protein RecN [Lactobacillus crispatus JV-V01]
 gi|256713265|gb|EEU28255.1| DNA repair protein [Lactobacillus crispatus MV-1A-US]
 gi|260572974|gb|EEX29533.1| DNA repair protein RecN [Lactobacillus crispatus MV-3A-US]
          Length = 560

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG +     ++ R G 
Sbjct: 5  LDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRGQK-----EMIRSGE 59

Query: 70 P 70
          P
Sbjct: 60 P 60


>gi|154149264|ref|YP_001406217.1| hypothetical protein CHAB381_0630 [Campylobacter hominis ATCC
          BAA-381]
 gi|153805273|gb|ABS52280.1| conserved hypothetical protein [Campylobacter hominis ATCC
          BAA-381]
          Length = 513

 Score = 40.8 bits (94), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63
          +KIK + +  FR Y+   +V     T+ VG N VGK+ ILEA+  F + G+G  +    D
Sbjct: 1  MKIKSMKVKNFRGYSDEIIVNFDDLTVIVGKNDVGKSTILEALDIFFNDGKGVVKIDKTD 60

Query: 64 VT 65
          V 
Sbjct: 61 VN 62


>gi|145591215|ref|YP_001153217.1| SMC domain-containing protein [Pyrobaculum arsenaticum DSM 13514]
 gi|145282983|gb|ABP50565.1| SMC domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 702

 Score = 40.8 bits (94), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 284 IAHG--STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
           I HG  S GEQ ++ + + +A AR +    G AP ++LDE + HLDE+ R  +  +V D+
Sbjct: 620 IDHGLLSLGEQNLLALSLRVALARAL---LGGAPFMMLDEPTEHLDEEHRKRIVELVRDL 676


>gi|49481871|gb|AAT66647.1| DNA repair and genetic recombination protein [Geobacillus
           stearothermophilus]
          Length = 573

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 19/105 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R G+
Sbjct: 5   LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                  A +EG+  L D        DDR   C +  D+ + V D
Sbjct: 60  EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90


>gi|302531359|ref|ZP_07283701.1| recombination protein F [Streptomyces sp. AA4]
 gi|302440254|gb|EFL12070.1| recombination protein F [Streptomyces sp. AA4]
          Length = 204

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L+E   K L D R+ +     +L+GPHR +L +    +A    + S GE     + + L 
Sbjct: 76  LRELLLKALADTRRQELERGISLVGPHRDELEL-ILGEAPAKGYASHGESWSFALALRLG 134

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
              L+    G  P+LLLD++ A LD  +R  L  +      Q+ +T  
Sbjct: 135 SYELLRAEAG-EPVLLLDDVFAELDRKRRARLAEVAAG-AEQVLITAA 180


>gi|49481865|gb|AAT66644.1| DNA repair and genetic recombination protein [Geobacillus
           stearothermophilus]
          Length = 573

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 19/105 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R G+
Sbjct: 5   LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                  A +EG+  L D        DDR   C +  D+ + V D
Sbjct: 60  EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90


>gi|49481861|gb|AAT66642.1| DNA repair and genetic recombination protein [Geobacillus
           stearothermophilus]
          Length = 573

 Score = 40.8 bits (94), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 19/105 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R G+
Sbjct: 5   LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                  A +EG+  L D        DDR   C +  D+ + V D
Sbjct: 60  EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90


>gi|49481873|gb|AAT66648.1| DNA repair and genetic recombination protein [Geobacillus
           stearothermophilus]
          Length = 573

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 19/105 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R G+
Sbjct: 5   LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                  A +EG+  L D        DDR   C +  D+ + V D
Sbjct: 60  EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90


>gi|47076774|dbj|BAD18317.1| DNA repair protein [Geobacillus stearothermophilus]
 gi|49481869|gb|AAT66646.1| DNA repair and genetic recombination protein [Geobacillus
           stearothermophilus]
          Length = 573

 Score = 40.8 bits (94), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 19/105 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R G+
Sbjct: 5   LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                  A +EG+  L D        DDR   C +  D+ + V D
Sbjct: 60  EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90


>gi|262373319|ref|ZP_06066598.1| chromosome segregation protein SMC [Acinetobacter junii SH205]
 gi|262313344|gb|EEY94429.1| chromosome segregation protein SMC [Acinetobacter junii SH205]
          Length = 1149

 Score = 40.8 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|226953498|ref|ZP_03823962.1| chromosome segregation ATPase [Acinetobacter sp. ATCC 27244]
 gi|226835783|gb|EEH68166.1| chromosome segregation ATPase [Acinetobacter sp. ATCC 27244]
          Length = 1152

 Score = 40.8 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|227497499|ref|ZP_03927728.1| SMC structural maintenance of chromosomes partitioning protein
           [Actinomyces urogenitalis DSM 15434]
 gi|226833073|gb|EEH65456.1| SMC structural maintenance of chromosomes partitioning protein
           [Actinomyces urogenitalis DSM 15434]
          Length = 431

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 42/192 (21%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L I  F+++AS   L  +   T  VG NG GK+N+++A++++   +G    R  S
Sbjct: 1   MHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGVKNLRGGS 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD---------RSVRCL-------- 103
            ADV   G+ S  +         G A++S+ ++  D             R L        
Sbjct: 61  MADVIFAGAGSRPAL--------GRAEVSLTIDNSDGVLPIDYTEVTVTRTLFRGGGSEY 112

Query: 104 QINDVVIRVVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           QIN    R++D         L + + +      +D +      ERR F++     +  +H
Sbjct: 113 QINGTPCRLLDVQELLSDTGLGRQMHVIVGQGRLDAVLQATPEERRGFIEEAAGVL--KH 170

Query: 156 RRRMIDFERLMR 167
           RRR    ER +R
Sbjct: 171 RRRK---ERALR 179


>gi|49481867|gb|AAT66645.1| DNA repair and genetic recombination protein [Geobacillus
           stearothermophilus]
          Length = 573

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 19/105 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R G+
Sbjct: 5   LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                  A +EG+  L D        DDR   C +  D+ + V D
Sbjct: 60  EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90


>gi|242398089|ref|YP_002993513.1| DNA double-strand break repair rad50 ATPase [Thermococcus
          sibiricus MM 739]
 gi|242264482|gb|ACS89164.1| DNA double-strand break repair rad50 ATPase [Thermococcus
          sibiricus MM 739]
          Length = 895

 Score = 40.8 bits (94), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 10/75 (13%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI---SFLSPG---RGFR 57
          +++I+ L I  FR + +  + F+    + +G NG GK++ILEA+    +L  G   RG++
Sbjct: 8  KMRIRSLKIKNFRAHENSHVEFNDGINLIIGQNGSGKSSILEAVFASLYLGHGSFPRGYK 67

Query: 58 RASYADVTRIGSPSF 72
          + +    TRIG   F
Sbjct: 68 KVN----TRIGKSGF 78


>gi|295397721|ref|ZP_06807793.1| DNA repair protein RecN [Aerococcus viridans ATCC 11563]
 gi|294974050|gb|EFG49805.1| DNA repair protein RecN [Aerococcus viridans ATCC 11563]
          Length = 564

 Score = 40.8 bits (94), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 11/106 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  F     L + FD+  T+  G+ G GK+ I++A+  L  GRG       D  R
Sbjct: 2   LQHLTIKNFAIIEDLTIDFDSGMTVLTGETGAGKSIIIDAVGLLVGGRG-----STDFIR 56

Query: 67  IGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            GS        F+      EG   LAD  I  +      VR L IN
Sbjct: 57  YGSEKFDLRGIFYMPDLSEEGRNMLADNDIPFDDAQLMIVRQLDIN 102


>gi|331007822|ref|ZP_08330925.1| hypothetical protein IMCC1989_2132 [gamma proteobacterium
          IMCC1989]
 gi|330418364|gb|EGG92927.1| hypothetical protein IMCC1989_2132 [gamma proteobacterium
          IMCC1989]
          Length = 634

 Score = 40.4 bits (93), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAI 47
          +++K + ISE++N     L FD      IFVG NG GK+N+LEA+
Sbjct: 1  MRLKSVYISEYKNLKKFSLSFDGASFINIFVGKNGSGKSNLLEAL 45


>gi|320093874|ref|ZP_08025715.1| hypothetical protein HMPREF9005_0327 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979191|gb|EFW10693.1| hypothetical protein HMPREF9005_0327 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 448

 Score = 40.4 bits (93), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 23/173 (13%)

Query: 7   IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
           +K L +  F+++AS   L  +   T  VG NG GK+N+++A++++      R  R  + A
Sbjct: 3   LKSLTLRGFKSFASATTLRLEPGITCVVGPNGSGKSNVVDALAWVMGEQGARAMRGGNMA 62

Query: 63  DVTRIGS---PSFFSTFA--RVEGMEGLADISIKLETRDDRSVRC----LQINDVVIRVV 113
           DV   G+   P+     A   ++  +GL DI     T      R      QIN    R++
Sbjct: 63  DVIFAGAGSRPALGRAQADLTIDNSDGLLDIEYSEVTISRTLFRGGGSEYQINGAPARLL 122

Query: 114 D--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
           D         + + + +      +D I S    ERR F++     +  +HRRR
Sbjct: 123 DVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEAAGVL--KHRRR 173


>gi|260886534|ref|ZP_05897797.1| hypothetical ATP-binding protein [Selenomonas sputigena ATCC
          35185]
 gi|330839624|ref|YP_004414204.1| SMC domain protein [Selenomonas sputigena ATCC 35185]
 gi|260863677|gb|EEX78177.1| hypothetical ATP-binding protein [Selenomonas sputigena ATCC
          35185]
 gi|329747388|gb|AEC00745.1| SMC domain protein [Selenomonas sputigena ATCC 35185]
          Length = 429

 Score = 40.4 bits (93), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 6/60 (10%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-----SFLSPGRGFRRASY 61
          IK L +  FR +  L + F   +T+ +G NG GK++IL+A+     SFL+ G G + A++
Sbjct: 3  IKRLQLENFRCFEQLTIDFPKDYTVLIGGNGAGKSSILDAVAIAMASFLA-GCGIQAANF 61


>gi|2369708|emb|CAA70738.1| RecN protein [Geobacillus stearothermophilus]
          Length = 143

 Score = 40.4 bits (93), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 19/105 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R G+
Sbjct: 5   LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                  A +EG+             DDR   C +  D+ + V D
Sbjct: 60  EK-----AEIEGL---------FLLDDDRHPCCQKCADIGVDVSD 90


>gi|255656881|ref|ZP_05402290.1| V-type ATP synthase subunit C [Clostridium difficile QCD-23m63]
 gi|296452282|ref|ZP_06893987.1| V-type ATP synthase subunit C [Clostridium difficile NAP08]
 gi|296877633|ref|ZP_06901663.1| V-type ATP synthase subunit C [Clostridium difficile NAP07]
 gi|296258885|gb|EFH05775.1| V-type ATP synthase subunit C [Clostridium difficile NAP08]
 gi|296431394|gb|EFH17211.1| V-type ATP synthase subunit C [Clostridium difficile NAP07]
          Length = 325

 Score = 40.4 bits (93), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%)

Query: 11  NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70
           N+  F    +++  FD    +FV    + K   LEA S  +P   F+  SY+DV + G  
Sbjct: 196 NLKSFIRVKNMKKDFDMFMNVFVSGGSLDKEKFLEAFSSDTPASCFKSTSYSDVCKNGMD 255

Query: 71  SFFSTFARV 79
           S F+ F ++
Sbjct: 256 SGFTVFEKL 264


>gi|126700577|ref|YP_001089474.1| V-type ATP synthase subunit C [Clostridium difficile 630]
 gi|254976503|ref|ZP_05272975.1| V-type ATP synthase subunit C [Clostridium difficile QCD-66c26]
 gi|255093887|ref|ZP_05323365.1| V-type ATP synthase subunit C [Clostridium difficile CIP 107932]
 gi|255307937|ref|ZP_05352108.1| V-type ATP synthase subunit C [Clostridium difficile ATCC 43255]
 gi|255315640|ref|ZP_05357223.1| V-type ATP synthase subunit C [Clostridium difficile QCD-76w55]
 gi|255518300|ref|ZP_05385976.1| V-type ATP synthase subunit C [Clostridium difficile QCD-97b34]
 gi|255651418|ref|ZP_05398320.1| V-type ATP synthase subunit C [Clostridium difficile QCD-37x79]
 gi|260684477|ref|YP_003215762.1| V-type ATP synthase subunit C [Clostridium difficile CD196]
 gi|260688136|ref|YP_003219270.1| V-type ATP synthase subunit C [Clostridium difficile R20291]
 gi|306521247|ref|ZP_07407594.1| V-type ATP synthase subunit C [Clostridium difficile QCD-32g58]
 gi|115252014|emb|CAJ69850.1| V-type ATP synthase subunit C [Clostridium difficile]
 gi|260210640|emb|CBA65325.1| V-type sodium ATP synthase subunit C [Clostridium difficile CD196]
 gi|260214153|emb|CBE06372.1| V-type sodium ATP synthase subunit C [Clostridium difficile R20291]
          Length = 325

 Score = 40.4 bits (93), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%)

Query: 11  NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70
           N+  F    +++  FD    +FV    + K   LEA S  +P   F+  SY+DV + G  
Sbjct: 196 NLKSFIRVKNMKKDFDMFMNVFVSGGSLDKEKFLEAFSSDTPASCFKSTSYSDVCKNGMD 255

Query: 71  SFFSTFARV 79
           S F+ F ++
Sbjct: 256 SGFTVFEKL 264


>gi|269860026|ref|XP_002649736.1| DNA repair protein RAD50 [Enterocytozoon bieneusi H348]
 gi|220066795|gb|EED44266.1| DNA repair protein RAD50 [Enterocytozoon bieneusi H348]
          Length = 1180

 Score = 40.4 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          M   I +    I  F  + S R+ FD   T+ VG NG GKT I+E + +L+ G
Sbjct: 1  MIRLISLDIKGIRSFDPHKSNRIEFDVPLTLIVGQNGTGKTTIIECLKYLTTG 53


>gi|323456696|gb|EGB12562.1| hypothetical protein AURANDRAFT_70503 [Aureococcus
          anophagefferens]
          Length = 1114

 Score = 40.4 bits (93), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M +R +I+ L I  F+++    ++     T  VG NG GK+N+++A+SF+
Sbjct: 1  MASRGRIRSLEIENFKSFGGKNVIAFRGFTSVVGPNGAGKSNLMDAVSFV 50


>gi|310639249|ref|YP_003944008.1| SMC domain-containing protein [Ketogulonicigenium vulgare Y25]
 gi|308752825|gb|ADO43969.1| SMC domain-containing protein [Ketogulonicigenium vulgare Y25]
          Length = 423

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI+ L+++  R +      FD   T+ VG NGVGK+++LEA+
Sbjct: 1  MKIRRLSVAGLRGFDQATFEFDPHFTLLVGVNGVGKSSVLEAL 43


>gi|294651981|ref|ZP_06729265.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
          19194]
 gi|292822137|gb|EFF81056.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
          19194]
          Length = 515

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 26/38 (68%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + I  ++    LR+ F+ + T+ +GDNGVGKT IL+AI
Sbjct: 61 IEICNYKKIRKLRINFEKELTVIIGDNGVGKTTILDAI 98


>gi|126458979|ref|YP_001055257.1| SMC domain-containing protein [Pyrobaculum calidifontis JCM 11548]
 gi|126248700|gb|ABO07791.1| SMC domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 700

 Score = 40.0 bits (92), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           S GEQ ++ + + +A AR +    G AP ++LDE + HLDE+ R  +  +V D+ S +
Sbjct: 624 SLGEQNLLALSLRVALARAL---IGTAPFMMLDEPTEHLDEEHRRRIVELVRDLTSVV 678


>gi|20094127|ref|NP_613974.1| SMC1-family ATPase [Methanopyrus kandleri AV19]
 gi|49036452|sp|Q8TXI4|RAD50_METKA RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|19887131|gb|AAM01904.1| SMC1-family ATPase involved in DNA repair [Methanopyrus kandleri
          AV19]
          Length = 876

 Score = 40.0 bits (92), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M  R+KI+ L     R+++S  + F     + VG NG GKT +LEAI+     R FR  S
Sbjct: 1  MIERVKIENL-----RSHSSTEIEFREGINVLVGPNGAGKTTVLEAITLALFPRTFR--S 53

Query: 61 YADVTRIGS 69
          Y  + R G 
Sbjct: 54 YDHMIREGE 62


>gi|323496668|ref|ZP_08101719.1| RecF/RecN/SMC family protein [Vibrio sinaloensis DSM 21326]
 gi|323318250|gb|EGA71210.1| RecF/RecN/SMC family protein [Vibrio sinaloensis DSM 21326]
          Length = 542

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 31/45 (68%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
           ++++  L++S FR +  L L FD + T+ +GDNG GKT+  +A++
Sbjct: 62  KLRLNSLSLSNFRRFDDLCLDFDEKLTVIIGDNGAGKTSFADAMA 106


>gi|256958230|ref|ZP_05562401.1| predicted protein [Enterococcus faecalis DS5]
 gi|256948726|gb|EEU65358.1| predicted protein [Enterococcus faecalis DS5]
 gi|315036041|gb|EFT47973.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX0027]
          Length = 196

 Score = 40.0 bits (92), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 14/162 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           I+IK LNI       S+ ++   ++ +F GDNG GKT +L+ IS +   +         +
Sbjct: 8   IEIKDLNIPYVDKKISMNIL--KEYNLFTGDNGNGKTLLLDYISGVKKAKRTVIKGNESI 65

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVDELNKHLRIS 123
             I    +FS   R+ GM+ L   S  L+ +  +S++   Q++D +++  D ++K L+  
Sbjct: 66  IYINQNIYFSD--RLSGMDFLK-FSYGLDGK--KSIQSFYQLSDKILKRED-IDKLLKKQ 119

Query: 124 W-LVPSMDRIFSG----LSMERRRFLDRMVFAIDPRHRRRMI 160
           W ++   ++ F      +S+ER  ++    FA   + R++M+
Sbjct: 120 WGMLSGGEKKFLYALILMSLEREWYILDEPFAFVDKKRKKML 161


>gi|293192415|ref|ZP_06609526.1| putative RecF/RecN/SMC N domain protein [Actinomyces odontolyticus
           F0309]
 gi|292820330|gb|EFF79324.1| putative RecF/RecN/SMC N domain protein [Actinomyces odontolyticus
           F0309]
          Length = 476

 Score = 40.0 bits (92), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 27/175 (15%)

Query: 7   IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
           +K L +  F+++AS   LV     T  VG NG GK+N+++A++++      R  R    A
Sbjct: 3   LKNLTLRGFKSFASATTLVLQPGITCVVGPNGSGKSNVVDALAWVMGEQGARALRGGQMA 62

Query: 63  DVTRIGSPSFFSTFAR------VEGMEGLADISIKLETRDDRSV-----RCLQINDVVIR 111
           DV   G+ S  +   R      ++  +GL DI    E    R++         IN    R
Sbjct: 63  DVIFAGT-SGRAALGRAQVDLTIDNTDGLLDIEYS-EVTISRTLFRGGGSEYSINGTPAR 120

Query: 112 VVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
           ++D         + + + +      +D I S    ERR F++     +  +HRRR
Sbjct: 121 LLDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEAAGVL--KHRRR 173


>gi|307267912|ref|ZP_07549302.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX4248]
 gi|312901751|ref|ZP_07761020.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX0470]
 gi|306515787|gb|EFM84310.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX4248]
 gi|311291220|gb|EFQ69776.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX0470]
 gi|315148232|gb|EFT92248.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX4244]
 gi|315169262|gb|EFU13279.1| ABC transporter, ATP-binding protein [Enterococcus faecalis TX1341]
 gi|315576343|gb|EFU88534.1| ABC transporter, ATP-binding protein [Enterococcus faecalis
           TX0309B]
 gi|315582835|gb|EFU95026.1| ABC transporter, ATP-binding protein [Enterococcus faecalis
           TX0309A]
          Length = 196

 Score = 40.0 bits (92), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 14/162 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           I+IK LNI       S+ ++   ++ +F GDNG GKT +L+ IS +   +         +
Sbjct: 8   IEIKDLNIPYVDKKISMNIL--KEYNLFTGDNGNGKTLLLDYISGVKKAKRTVIKGNESI 65

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVDELNKHLRIS 123
             I    +FS   R+ GM+ L   S  L+ +  +S++   Q++D +++  D ++K L+  
Sbjct: 66  IYINQNIYFSD--RLSGMDFLK-FSYGLDGK--KSIQSFYQLSDKILKRED-IDKLLKKQ 119

Query: 124 W-LVPSMDRIFSG----LSMERRRFLDRMVFAIDPRHRRRMI 160
           W ++   ++ F      +S+ER  ++    FA   + R++M+
Sbjct: 120 WGMLSGGEKKFLYALILMSLEREWYILDEPFAFVDKKRKKML 161


>gi|78222390|ref|YP_384137.1| condensin subunit Smc [Geobacter metallireducens GS-15]
 gi|78193645|gb|ABB31412.1| condensin subunit Smc [Geobacter metallireducens GS-15]
          Length = 1176

 Score = 40.0 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 12/98 (12%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +KIK L+IS F+++   + L F    T  VG NG GK+N+++AI ++      +  R  S
Sbjct: 1  MKIKRLDISGFKSFVDKVSLDFQQGITSIVGPNGCGKSNVVDAIRWVMGEQSAKNLRGKS 60

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98
            D+   GS S            G+A++S+   T D R
Sbjct: 61 MEDIIFGGSES--------RKPLGMAEVSMAFSTEDGR 90


>gi|170289653|ref|YP_001736469.1| DNA repair ATPase SbcC [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173733|gb|ACB06786.1| ATPase involved in DNA repair, SbcC [Candidatus Korarchaeum
          cryptofilum OPF8]
          Length = 902

 Score = 40.0 bits (92), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++IK +++  F ++    + F       +G+NG GKT ILEAI++    R  R+    ++
Sbjct: 1  MRIKRISLENFGSHQKTDITFADGINAIIGNNGAGKTTILEAIAYALYHRASRQQD--EL 58

Query: 65 TRIGSP 70
           RIG+P
Sbjct: 59 IRIGAP 64


>gi|153868967|ref|ZP_01998681.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152074461|gb|EDN71313.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 159

 Score = 40.0 bits (92), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          IK++ + +  FR +  L L F +  T+ +G+NG GKT IL+ ++ L
Sbjct: 13 IKVRKIILENFRGFEQLELEFQSDLTVLIGENGAGKTTILDGLAKL 58


>gi|213421125|ref|ZP_03354191.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 216

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 43  ILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           +LEAI  L  GR FR      V R    +F     R++G E    I +  + + D  VR 
Sbjct: 1   MLEAIYTLGHGRAFRSLQPGRVIRHEQEAFV-LHGRLQGEERETSIGLTKDKQGDSKVR- 58

Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
             I+      + EL   + +  + P    + +G    RR FLD   F  +        + 
Sbjct: 59  --IDGTDGHKIAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNL 116

Query: 163 ERLMRGRNRLLTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           +RL++ RN  L +   ++       + ++  L  +I+  R E  +A++  + +  Q +  
Sbjct: 117 KRLLKQRNAALRQVSRYEQ--LRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFL 173

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           P   L+ + F  G   ++      +YA  L    + D M   T  GPH++
Sbjct: 174 PEFSLTFS-FQRGWEKET------DYADVLERSFERDRMLTYTAHGPHKA 216


>gi|49481921|gb|AAT66672.1| DNA repair and genetic recombination protein [Geobacillus
          subterraneus]
          Length = 573

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGX-----AEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|163800493|ref|ZP_02194394.1| hypothetical protein 1103602000595_AND4_07419 [Vibrio sp. AND4]
 gi|159175936|gb|EDP60730.1| hypothetical protein AND4_07419 [Vibrio sp. AND4]
          Length = 553

 Score = 40.0 bits (92), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M N + I+ L I  F+   S    F+ +  I VGDN  GKT ILEA+  +S    +R  S
Sbjct: 1  MGNLMYIEKLTIKNFKKIESGEYEFNEKVNILVGDNDSGKTTILEALELVS-SSNYRGKS 59

Query: 61 YADVTRIGSPSFFSTFARVEGMEG 84
             +    SP  F+  A    +EG
Sbjct: 60 ---INSSLSPQLFNNKAVRTYLEG 80


>gi|217967336|ref|YP_002352842.1| SMC domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217336435|gb|ACK42228.1| SMC domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 1082

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RASY 61
          I +K L ++ F+++  + ++ F  + T+  G NG GK+NIL+AI ++   +  +  RA  
Sbjct: 2  IYLKSLELTNFKSFIGNNKIPFSQKFTVITGPNGSGKSNILDAIRWVLGEQRIKALRAEK 61

Query: 62 ADVTRIGSPSFFS--TFARVE 80
           D    G   F+S   +A+VE
Sbjct: 62 TDEIIFGGNRFYSKANYAKVE 82


>gi|49481961|gb|AAT66692.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A86]
          Length = 573

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 19/103 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5   LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
                  A +EG+  L D        DDR   C +  +V I V
Sbjct: 60  EK-----AEIEGL-FLLD--------DDRHPCCQKCAEVGIDV 88


>gi|138895960|ref|YP_001126413.1| DNA repair and genetic recombination [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248851|ref|ZP_03147551.1| DNA repair protein RecN [Geobacillus sp. G11MC16]
 gi|49481927|gb|AAT66675.1| DNA repair and genetic recombination protein [Geobacillus
           thermodenitrificans]
 gi|49481929|gb|AAT66676.1| DNA repair and genetic recombination protein [Geobacillus
           thermodenitrificans]
 gi|49481931|gb|AAT66677.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A21]
 gi|49481933|gb|AAT66678.1| DNA repair and genetic recombination protein [Geobacillus
           thermodenitrificans]
 gi|49481935|gb|AAT66679.1| DNA repair and genetic recombination protein [Geobacillus
           thermodenitrificans]
 gi|49481937|gb|AAT66680.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A45]
 gi|49481939|gb|AAT66681.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A5]
 gi|49481941|gb|AAT66682.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A54]
 gi|49481945|gb|AAT66684.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A66]
 gi|49481947|gb|AAT66685.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A67]
 gi|49481949|gb|AAT66686.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A69]
 gi|49481953|gb|AAT66688.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A73]
 gi|49481965|gb|AAT66694.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A91]
 gi|82395828|gb|ABB72478.1| DNA repair protein [Geobacillus thermodenitrificans NG80-2]
 gi|134267473|gb|ABO67668.1| DNA repair and genetic recombination [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211727|gb|EDY06486.1| DNA repair protein RecN [Geobacillus sp. G11MC16]
          Length = 573

 Score = 40.0 bits (92), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 19/103 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5   LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
                  A +EG+  L D        DDR   C +  +V I V
Sbjct: 60  EK-----AEIEGL-FLLD--------DDRHPCCQKCAEVGIDV 88


>gi|332968938|gb|EGK07984.1| ATPase [Desmospora sp. 8437]
          Length = 515

 Score = 40.0 bits (92), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 11/91 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++++ I   R +A  R+ F       VG+NGVGK+ IL++ + +          Y D ++
Sbjct: 54  LEWIKIRGVRGWAGERIDFKFPIVAIVGENGVGKSTILQSAASI----------YKDSSK 103

Query: 67  IGSPSFF-STFARVEGMEGLADISIKLETRD 96
             +  ++ STF      E L DI IK   R+
Sbjct: 104 TKNEQYYPSTFFPDTAWEELTDIEIKASIRE 134


>gi|313500657|gb|ADR62023.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 631

 Score = 40.0 bits (92), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAI 47
          +++K L+IS ++N  +  L FD +  +  FVG NG GK+N+ EA+
Sbjct: 1  MRLKLLSISHYKNLKNFNLEFDGESFVDLFVGKNGSGKSNLFEAL 45


>gi|121595344|ref|YP_987240.1| SMC domain-containing protein [Acidovorax sp. JS42]
 gi|120607424|gb|ABM43164.1| SMC domain protein [Acidovorax sp. JS42]
          Length = 406

 Score = 40.0 bits (92), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          ++++ L +  FR Y  L +   A+ T+ +G+NG GKT +L+AI+
Sbjct: 1  MRLQRLTLENFRGYTCLEIGLGARLTLLLGENGAGKTTLLDAIA 44


>gi|49481951|gb|AAT66687.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A71]
          Length = 573

 Score = 40.0 bits (92), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 19/103 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5   LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
                  A +EG+  L D        DDR   C +  +V I V
Sbjct: 60  EK-----AEIEGL-FLLD--------DDRHPCCQKCAEVGIDV 88


>gi|108799563|ref|YP_639760.1| hypothetical protein Mmcs_2596 [Mycobacterium sp. MCS]
 gi|119868673|ref|YP_938625.1| hypothetical protein Mkms_2640 [Mycobacterium sp. KMS]
 gi|108769982|gb|ABG08704.1| hypothetical protein Mmcs_2596 [Mycobacterium sp. MCS]
 gi|119694762|gb|ABL91835.1| conserved hypothetical protein [Mycobacterium sp. KMS]
          Length = 887

 Score = 40.0 bits (92), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 15/92 (16%)

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           D  F++   AL+    +  F GR+  +  R+ L G H+   ++            S GEQ
Sbjct: 616 DALFNEECIALRAPALRVEFVGRQGRAQRRKVLNGKHKPSTVL------------SEGEQ 663

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
           KV+ +  FLA ARL   T   AP++  D +S+
Sbjct: 664 KVLAMADFLAEARLAGIT---APVIFDDPVSS 692


>gi|315611794|ref|ZP_07886716.1| conserved hypothetical protein [Streptococcus sanguinis ATCC
          49296]
 gi|315316209|gb|EFU64239.1| conserved hypothetical protein [Streptococcus sanguinis ATCC
          49296]
          Length = 880

 Score = 40.0 bits (92), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +KIK + I  F+N    R++ F    T+FVG NG GKT I +AI     G+  RR   +D
Sbjct: 1  MKIKKILIKNFKNIKGTRIIDFQENVTLFVGPNGFGKTTIFDAIELSLTGK-IRRIEESD 59

Query: 64 VTRIGSPSFFSTF 76
           +  G  SF + +
Sbjct: 60 YSD-GRSSFSTPY 71


>gi|49481943|gb|AAT66683.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A65]
 gi|49481955|gb|AAT66689.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A74]
          Length = 573

 Score = 40.0 bits (92), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 19/103 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5   LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
                  A +EG+  L D        DDR   C +  +V I V
Sbjct: 60  EK-----AEIEGL-FLLD--------DDRHPCCQKCAEVGIDV 88


>gi|300869534|ref|ZP_07114116.1| ATP binding protein [Oscillatoria sp. PCC 6506]
 gi|300332507|emb|CBN59314.1| ATP binding protein [Oscillatoria sp. PCC 6506]
          Length = 420

 Score = 40.0 bits (92), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+K L I+ FR   +L L F+    I  +G+NGVGK++IL+ I+ L   R      + +
Sbjct: 1  MKVKRLKINAFRGIDNLNLEFNPDEPIVIIGNNGVGKSSILDCIAILL-SRFLYLIQFPN 59

Query: 64 VTRIGSPSFF 73
               +PSFF
Sbjct: 60 KNDSLNPSFF 69


>gi|256422037|ref|YP_003122690.1| hypothetical protein Cpin_3013 [Chitinophaga pinensis DSM 2588]
 gi|256036945|gb|ACU60489.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
          Length = 520

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KIK LN   F+ + SL + F     + +GDN  GK++IL AI  +  G   +  S     
Sbjct: 6   KIKLLN---FKRFPSLEIEFQDDLNLLIGDNEAGKSSILSAIDLVLSGSHSKVESLGIDV 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
            + S +  S FA  +    L  + I+L   D ++ 
Sbjct: 63  LLNSQAVESFFAGAKQYNRLPKLEIELYLNDQQNA 97


>gi|153872219|ref|ZP_02001174.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152071318|gb|EDN68829.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 371

 Score = 40.0 bits (92), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I+F+ I+ +R+  SL L      ++F G NG GKTN  EA+ F++
Sbjct: 5  IRFIKIANYRSIDSLELHNIKPFSVFAGPNGAGKTNFFEALDFVN 49


>gi|256843402|ref|ZP_05548890.1| DNA repair protein RecN [Lactobacillus crispatus 125-2-CHN]
 gi|293380306|ref|ZP_06626380.1| DNA repair protein RecN [Lactobacillus crispatus 214-1]
 gi|256614822|gb|EEU20023.1| DNA repair protein RecN [Lactobacillus crispatus 125-2-CHN]
 gi|290923121|gb|EFE00050.1| DNA repair protein RecN [Lactobacillus crispatus 214-1]
          Length = 560

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG + 
Sbjct: 5  LDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRGQKE 53


>gi|297529444|ref|YP_003670719.1| DNA repair protein RecN [Geobacillus sp. C56-T3]
 gi|297252696|gb|ADI26142.1| DNA repair protein RecN [Geobacillus sp. C56-T3]
          Length = 573

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|49481879|gb|AAT66651.1| DNA repair and genetic recombination protein [Geobacillus
          thermoleovorans]
          Length = 573

 Score = 40.0 bits (92), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFXIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|206900328|ref|YP_002250664.1| chromosome segregation SMC protein, putative [Dictyoglomus
          thermophilum H-6-12]
 gi|206739431|gb|ACI18489.1| chromosome segregation SMC protein, putative [Dictyoglomus
          thermophilum H-6-12]
          Length = 1084

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RASY 61
          I +K L ++ F+++  + ++ F    T+  G NG GK+NIL+AI ++   +  +  RA  
Sbjct: 2  IYLKSLELTNFKSFIGNNKIPFSQNFTVITGPNGSGKSNILDAIRWVLGEQRVKTLRAEK 61

Query: 62 ADVTRIGSPSFFS--TFARVE 80
           D    G   F+S   +A+VE
Sbjct: 62 TDEVIFGGNKFYSQANYAKVE 82


>gi|49481923|gb|AAT66673.1| DNA repair and genetic recombination protein [Geobacillus
          subterraneus]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|149924994|ref|ZP_01913318.1| Chromosome segregation protein SMC [Plesiocystis pacifica SIR-1]
 gi|149814141|gb|EDM73760.1| Chromosome segregation protein SMC [Plesiocystis pacifica SIR-1]
          Length = 651

 Score = 39.7 bits (91), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 12/97 (12%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          ++IK + +  F+++A   +V  D   T  +G NG GK+NI++AI +       +  R   
Sbjct: 1  MRIKKIEVIGFKSFADREVVVLDDHVTAVIGPNGCGKSNIVDAIRWCLGEQRAKHLRGGG 60

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97
           ADV   GS +         G  G+A+++I  E+  D
Sbjct: 61 MADVIFAGSST--------RGPAGMAEVTITFESEGD 89


>gi|261417752|ref|YP_003251434.1| DNA repair protein RecN [Geobacillus sp. Y412MC61]
 gi|319767436|ref|YP_004132937.1| DNA repair protein RecN [Geobacillus sp. Y412MC52]
 gi|261374209|gb|ACX76952.1| DNA repair protein RecN [Geobacillus sp. Y412MC61]
 gi|317112302|gb|ADU94794.1| DNA repair protein RecN [Geobacillus sp. Y412MC52]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|15678568|ref|NP_275683.1| intracellular protein transport protein [Methanothermobacter
          thermautotrophicus str. Delta H]
 gi|18201989|sp|O26640|RAD50_METTH RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|2621615|gb|AAB85046.1| intracellular protein transport protein [Methanothermobacter
          thermautotrophicus str. Delta H]
          Length = 837

 Score = 39.7 bits (91), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          I+ L +   R+Y S R+ FD   T+F GD G GKT +L A+ F   G G +R 
Sbjct: 3  IRSLELKNIRSYESGRVEFDDGVTLFEGDIGSGKTTLLLAVEFALFGLGDQRG 55


>gi|49481901|gb|AAT66662.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
          W9A93]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|49481957|gb|AAT66690.1| DNA repair and genetic recombination protein [Geobacillus kaue]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|49481919|gb|AAT66671.1| DNA repair and genetic recombination protein [Geobacillus
          subterraneus]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|325957121|ref|YP_004292533.1| DNA repair protein recn [Lactobacillus acidophilus 30SC]
 gi|325333686|gb|ADZ07594.1| DNA repair protein recn [Lactobacillus acidophilus 30SC]
          Length = 560

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG + 
Sbjct: 5  LDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRGQKE 53


>gi|307269738|ref|ZP_07551068.1| hypothetical protein HMPREF9498_01865 [Enterococcus faecalis
          TX4248]
 gi|306513848|gb|EFM82450.1| hypothetical protein HMPREF9498_01865 [Enterococcus faecalis
          TX4248]
          Length = 448

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          I +K ++I     Y ++ +  D +  +FVG+NG+GKT IL  I FL       +  YA +
Sbjct: 10 INLKQIDIEGLHGYYNVSIPLDKKANLFVGENGLGKTTILNIIYFL------LKKEYAKL 63

Query: 65 TR 66
          T+
Sbjct: 64 TK 65


>gi|85712484|ref|ZP_01043533.1| Chromosome segregation ATPase, sms [Idiomarina baltica OS145]
 gi|85693762|gb|EAQ31711.1| Chromosome segregation ATPase, sms [Idiomarina baltica OS145]
          Length = 581

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 59/113 (52%), Gaps = 18/113 (15%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++  + ++ F  Q T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLKHIKLAGFKSFVDATKVPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEG-MEGLADISIKLE-TRDDRS 99
             DV   GS +            F +T  R++G      +IS+K + TRD +S
Sbjct: 61  MTDVIFNGSQARKPVSQASVELVFDNTSGRIQGEFASYNEISVKRQVTRDGQS 113


>gi|293393082|ref|ZP_06637397.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291424228|gb|EFE97442.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 548

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)

Query: 5  IKIKFLNI-SEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFLSPGRGFRRA-- 59
          +K+  L+I S F+N  ++ + FD  H  T+ VG NG GK+N+LEA+  +        A  
Sbjct: 1  MKVDKLHIRSRFKNLENVTVDFDQDHLMTVIVGRNGSGKSNVLEALVSIFRNLDLGEAPP 60

Query: 60 -SYADVTRIGSP 70
           SY  V R+G P
Sbjct: 61 FSYELVYRLGEP 72


>gi|49481899|gb|AAT66661.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
          W9A90]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|49481925|gb|AAT66674.1| DNA repair and genetic recombination protein [Geobacillus
          uzenensis]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|157372541|ref|YP_001480530.1| ABC transporter-like protein [Serratia proteamaculans 568]
 gi|157324305|gb|ABV43402.1| ABC transporter-related protein [Serratia proteamaculans 568]
          Length = 539

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 44/100 (44%), Gaps = 16/100 (16%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS-PGRGF--RRASYADVTR-------- 66
           +  L L FD Q    VG NGVGKT +L  I+ L  PG G     AS A V +        
Sbjct: 26  FGPLDLTFDQQRCGLVGRNGVGKTRLLRLIAGLDLPGNGHVESHASLAYVAQQPDLAPRT 85

Query: 67  -----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101
                +G    F+  AR+E     AD   +LE + D S R
Sbjct: 86  TLAQLLGYGETFAALARLEQGRPQADDIDRLEGQWDLSDR 125


>gi|49481889|gb|AAT66656.1| DNA repair and genetic recombination protein [Geobacillus
          stearothermophilus]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|49481895|gb|AAT66659.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
          W9A88]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|49481883|gb|AAT66653.1| DNA repair and genetic recombination protein [Bacillus
          caldovelox]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|295693198|ref|YP_003601808.1| DNA repair protein recn [Lactobacillus crispatus ST1]
 gi|295031304|emb|CBL50783.1| DNA repair protein RecN [Lactobacillus crispatus ST1]
          Length = 560

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG + 
Sbjct: 5  LDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRGQKE 53


>gi|38146942|gb|AAR11857.1| DNA repair and genetic recombination [Geobacillus
          stearothermophilus]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|49481897|gb|AAT66660.1| DNA repair and genetic recombination protein [Geobacillus
          lituanicus]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|49481881|gb|AAT66652.1| DNA repair and genetic recombination protein [Bacillus
          caldotenax]
 gi|49481887|gb|AAT66655.1| DNA repair and genetic recombination protein [Geobacillus
          vulcani]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|56420924|ref|YP_148242.1| DNA repair protein [Geobacillus kaustophilus HTA426]
 gi|47076824|dbj|BAD18364.1| DNA repair protein [Geobacillus kaustophilus]
 gi|49481875|gb|AAT66649.1| DNA repair and genetic recombination protein [Geobacillus
          kaustophilus]
 gi|49481885|gb|AAT66654.1| DNA repair and genetic recombination protein [Geobacillus
          thermoleovorans]
 gi|49481893|gb|AAT66658.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
          W9A60]
 gi|56380766|dbj|BAD76674.1| DNA repair protein (recombination protein N) [Geobacillus
          kaustophilus HTA426]
 gi|312985018|gb|ADR30683.1| RecN [Geobacillus kaustophilus]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|327183845|gb|AEA32292.1| DNA repair protein recn [Lactobacillus amylovorus GRL 1118]
          Length = 560

 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG
Sbjct: 5  LDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRG 50


>gi|227893302|ref|ZP_04011107.1| DNA repair protein [Lactobacillus ultunensis DSM 16047]
 gi|227864882|gb|EEJ72303.1| DNA repair protein [Lactobacillus ultunensis DSM 16047]
          Length = 560

 Score = 39.7 bits (91), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG + 
Sbjct: 5  LDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRGQKE 53


>gi|225874788|ref|YP_002756247.1| hypothetical protein ACP_3245 [Acidobacterium capsulatum ATCC
          51196]
 gi|225792214|gb|ACO32304.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC
          51196]
          Length = 615

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA 59
          ++++ L I+ FR  A   + F   HT+ VG N +GK+ I EA+   L P R FRR 
Sbjct: 1  MRVRRLKITHFRGVAEGSVDFTG-HTLLVGGNNIGKSTICEALDLVLGPERLFRRP 55


>gi|145301156|ref|YP_001143997.1| hypothetical protein ASA_4333 [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142853928|gb|ABO92249.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 483

 Score = 39.7 bits (91), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 6/72 (8%)

Query: 5  IKIKFLNI-SEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFLSPGRGFRRA-- 59
          +K+  L+I S F+N  ++++ FD  H  T+ VG NG GK+N+LEA+  +        A  
Sbjct: 1  MKVNNLHIRSRFKNLENVKVDFDENHLMTVVVGRNGSGKSNVLEALVAIFRNLDLGDAPP 60

Query: 60 -SYADVTRIGSP 70
           SY  + R+G P
Sbjct: 61 FSYELIYRLGEP 72


>gi|49481891|gb|AAT66657.1| DNA repair and genetic recombination protein [Geobacillus
          stearothermophilus]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|49481877|gb|AAT66650.1| DNA repair and genetic recombination protein [Geobacillus
          thermocatenulatus]
          Length = 573

 Score = 39.7 bits (91), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|288560363|ref|YP_003423849.1| DNA double-strand break repair protein Rad50 [Methanobrevibacter
          ruminantium M1]
 gi|288543073|gb|ADC46957.1| DNA double-strand break repair protein Rad50 [Methanobrevibacter
          ruminantium M1]
          Length = 932

 Score = 39.7 bits (91), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          K L +  F+++A   L  D   ++ VG+NG GK++I EAISF
Sbjct: 4  KHLQLKNFKSHADTELDLDLGISLIVGENGAGKSSIFEAISF 45


>gi|300811183|ref|ZP_07091693.1| ABC transporter, ATP-binding protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497827|gb|EFK32839.1| ABC transporter, ATP-binding protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 212

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 17/97 (17%)

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
           RK D   +R      + DL  DY DK IT   G   +Q+V L+   L           F 
Sbjct: 104 RKQDFAEKRAQEALKQVDLPADYLDKKITTLSGGE-KQRVALIRNLL-----------FR 151

Query: 315 P-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           P +LLLDE++  LDE+ +    RIV  + +++   GT
Sbjct: 152 PEVLLLDEVTTGLDEESK----RIVHQLIARVHQEGT 184


>gi|116075787|ref|ZP_01473046.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. RS9916]
 gi|116067102|gb|EAU72857.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. RS9916]
          Length = 356

 Score = 39.7 bits (91), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 156/357 (43%), Gaps = 42/357 (11%)

Query: 21  LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVE 80
           ++L  +A   + +G NGVGK+N+LE++  L   R  R +   D+       + +  AR++
Sbjct: 1   MQLEIEAPRLLVIGRNGVGKSNLLESVELLGSLRSHRASQDQDLI-----HWDAREARLK 55

Query: 81  GMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME 139
                 D + ++L  +  R  +         R    L + L +  + P     FS L + 
Sbjct: 56  ARTVDHDELELQLRRKGGRQAK---------RNGKNLERQLDL--IGPLRCVGFSALDLH 104

Query: 140 --------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSI 186
                   RR +LDR+V  ++P +   +  + RL+R R +L   G    S        + 
Sbjct: 105 LVRGEPALRRSWLDRVVLQLEPIYAELISRYSRLLRQRAQLWRRGRGMPSAERDALLDTF 164

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TGFLDGKFDQSFC- 241
           + QMA +  +I+  R   +  L  L  ++    +  + +L+L       L+G+  +    
Sbjct: 165 DLQMALISTRIHRRRRRALARLEPLASQWQTHLSQGNEQLTLRYQPGSRLEGEEAEEPWR 224

Query: 242 -ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            A+ E+   +  +  ++ S      +GPHR ++ +D          GS G+Q+ +++ + 
Sbjct: 225 LAIGEQLKLQRSEEERLGSCR----VGPHRDEISLDLNGNPAR-RFGSAGQQRTLVLALK 279

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           LA   L+    G  P+LLLD++ A LD +++  L   V D   Q  ++ T    F+ 
Sbjct: 280 LAELELVGELWGQPPLLLLDDVLAELDPERQLTLLEAVGD-EHQCLVSATHLDAFEG 335


>gi|295110147|emb|CBL24100.1| Predicted ATPases [Ruminococcus obeum A2-162]
          Length = 368

 Score = 39.7 bits (91), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I  +NI  FR   +LRL   AQ  I  G+N  GKT++LE I  L          ++ ++R
Sbjct: 4  INEINIKSFRGIRNLRLTDLAQVNIIAGNNNCGKTSVLEIIESLRQPDDI--LMWSSLSR 61

Query: 67 IGSPSFFSTFARVEGMEGLADISIK 91
            + S  +  +  EG+  L DI+I+
Sbjct: 62 RTTTSMRNRMSFYEGIYDLFDINIE 86


>gi|154246976|ref|YP_001417934.1| ATP-dependent endonuclease family protein [Xanthobacter
          autotrophicus Py2]
 gi|154161061|gb|ABS68277.1| ATP-dependent endonuclease family protein [Xanthobacter
          autotrophicus Py2]
          Length = 598

 Score = 39.3 bits (90), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRAS 60
          +KI  + I  FR   S +LV    H + +GDN  GK+++ EAI   L P R  RR  
Sbjct: 1  MKIFSVGIENFRGIQSAKLVL-PDHAVLIGDNNTGKSSVFEAIDLALGPDRLSRRPP 56


>gi|224025067|ref|ZP_03643433.1| hypothetical protein BACCOPRO_01801 [Bacteroides coprophilus DSM
          18228]
 gi|224018303|gb|EEF76301.1| hypothetical protein BACCOPRO_01801 [Bacteroides coprophilus DSM
          18228]
          Length = 516

 Score = 39.3 bits (90), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYADVT 65
          IK + +  FR Y S   V  +  T FVG N +GK+ ILEA+  F + G+G       D+ 
Sbjct: 3  IKSVTLKNFRGYRSETTVLFSNLTTFVGRNDIGKSTILEALDIFFNEGKGCISLDKEDIN 62

Query: 66 RIGS 69
          +  S
Sbjct: 63 KRAS 66


>gi|50084058|ref|YP_045568.1| putative chromosome segregation ATPase [Acinetobacter sp. ADP1]
 gi|49530034|emb|CAG67746.1| putative chromosome segregation ATPases [Acinetobacter sp. ADP1]
          Length = 1149

 Score = 39.3 bits (90), Expect = 0.91,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L ++ F+++A S  L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLAGFKSFADSATLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|303248994|ref|ZP_07335239.1| ABC transporter related protein [Desulfovibrio fructosovorans JJ]
 gi|302489580|gb|EFL49520.1| ABC transporter related protein [Desulfovibrio fructosovorans JJ]
          Length = 665

 Score = 39.3 bits (90), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 26/112 (23%)

Query: 253 DGRKMDSMSRRTLIGPHRSDLIV-----------DYCDKAITIAHGSTGEQ-KVVLVGIF 300
           D   M  M R  + GP  + L V           DY ++ ++   G  GE+ ++VL G+F
Sbjct: 406 DALVMSEMKR--MAGPKATHLEVCSILGLFLLGEDYWERRVSELSG--GEKSRLVLAGLF 461

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            A A            L+LDE + HLD + R AL R ++D    I M   D+
Sbjct: 462 SARANF----------LVLDEPTNHLDLESREALVRALSDYSGAILMVAHDR 503


>gi|226940717|ref|YP_002795791.1| RecF [Laribacter hongkongensis HLHK9]
 gi|226715644|gb|ACO74782.1| RecF [Laribacter hongkongensis HLHK9]
          Length = 610

 Score = 39.3 bits (90), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 37/80 (46%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +K+  + +  F+   S RL      T+  G NG GK+++LEA+     G   R A   D 
Sbjct: 1  MKLTRIEVQNFQGLRSARLALTTPVTLIAGRNGAGKSSLLEAVRMAMSGDPVRVARKKDC 60

Query: 65 TRIGSPSFFSTFARVEGMEG 84
           ++ +    +   RVE  +G
Sbjct: 61 VQLVTDGHKAGMVRVEFADG 80


>gi|295689926|ref|YP_003593619.1| chromosome partition protein [Caulobacter segnis ATCC 21756]
 gi|295431829|gb|ADG11001.1| chromosome partition protein [Caulobacter segnis ATCC 21756]
          Length = 604

 Score = 39.3 bits (90), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          L I  FR   S R+ F  QHT+ VG N  GKT I+EA++ L
Sbjct: 6  LRIENFRGIRSGRVRF-GQHTVLVGPNNSGKTTIIEALALL 45


>gi|167548992|ref|ZP_02342751.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA29]
 gi|205325625|gb|EDZ13464.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA29]
          Length = 465

 Score = 39.3 bits (90), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASY 61
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+AI   L P  RGF  + Y
Sbjct: 1  MRINKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRLTLFPFIRGFDASLY 59


>gi|229543907|ref|ZP_04432966.1| DNA repair protein RecN [Bacillus coagulans 36D1]
 gi|229325046|gb|EEN90722.1| DNA repair protein RecN [Bacillus coagulans 36D1]
          Length = 567

 Score = 39.3 bits (90), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L+I  F    +L L F+A  T+  G+ G GK+ I++AI  L+ GRG
Sbjct: 2  LQELSIKNFAIIDALTLSFEAGLTVLTGETGAGKSIIIDAIQLLTGGRG 50


>gi|325276064|ref|ZP_08141876.1| hypothetical protein G1E_21571 [Pseudomonas sp. TJI-51]
 gi|324098786|gb|EGB96820.1| hypothetical protein G1E_21571 [Pseudomonas sp. TJI-51]
          Length = 769

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          +   I ++ L + +FR    ++L  D + TI VG N  GKT++L A+  FLS G  F
Sbjct: 10 VAGSITLRLLELCQFRRLGKVQLDIDKKTTILVGANNSGKTSVLAALRHFLSDGSRF 66


>gi|270291691|ref|ZP_06197907.1| putative ATP-binding protein [Streptococcus sp. M143]
 gi|270279776|gb|EFA25617.1| putative ATP-binding protein [Streptococcus sp. M143]
          Length = 490

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I+   I+   NY  + L F    TI++G+NG+GKT IL  + +L
Sbjct: 4  IEKFKINNLHNYYDVELNFKNDKTIYIGENGIGKTTILSILYYL 47


>gi|119486512|ref|ZP_01620570.1| hypothetical protein L8106_00920 [Lyngbya sp. PCC 8106]
 gi|119456414|gb|EAW37545.1| hypothetical protein L8106_00920 [Lyngbya sp. PCC 8106]
          Length = 382

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 26/44 (59%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K L I  FR + S  L    +  + VG+N  GKT+ILEAI FL
Sbjct: 2  LKTLKIENFRGFQSFELQSLGRVNLLVGENNSGKTSILEAIQFL 45


>gi|49481959|gb|AAT66691.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A84]
          Length = 573

 Score = 39.3 bits (90), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 19/103 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5   LXIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
                  A +EG+  L D        DDR   C +  +V I V
Sbjct: 60  EK-----AEIEGL-FLLD--------DDRHPCCQKCAEVGIDV 88


>gi|58337600|ref|YP_194185.1| DNA repair protein [Lactobacillus acidophilus NCFM]
 gi|227904240|ref|ZP_04022045.1| DNA repair protein [Lactobacillus acidophilus ATCC 4796]
 gi|58254917|gb|AAV43154.1| DNA repair protein [Lactobacillus acidophilus NCFM]
 gi|227867888|gb|EEJ75309.1| DNA repair protein [Lactobacillus acidophilus ATCC 4796]
          Length = 560

 Score = 39.3 bits (90), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG
Sbjct: 5  LDIQNFAIIKSLKVRFQERMTVIIGETGAGKSIIIDAVSLLMGGRG 50


>gi|298377208|ref|ZP_06987162.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298266192|gb|EFI07851.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 516

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYADVT 65
          IK + +  FR Y S   V  +  T FVG N +GK+ ILEA+  F + G+G       D+ 
Sbjct: 3  IKSVTLKNFRGYRSETTVLFSNLTTFVGRNDIGKSTILEALDIFFNEGKGCIPLDKEDIN 62

Query: 66 RIGS 69
          +  S
Sbjct: 63 KRAS 66


>gi|311992855|ref|YP_004009722.1| gp46 recombination endonuclease subunit [Acinetobacter phage
          Acj61]
 gi|295815144|gb|ADG36070.1| gp46 recombination endonuclease subunit [Acinetobacter phage
          Acj61]
          Length = 559

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 6/54 (11%)

Query: 10 LNISEFRNYAS-----LRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGFR 57
          LN   ++N  S     +R+  DA H T+  G NG GK+ +LEAI+F   G+ FR
Sbjct: 6  LNSVAYKNIMSVGDTEIRIALDAHHKTLITGKNGGGKSTMLEAITFALFGKPFR 59


>gi|295111234|emb|CBL27984.1| hypothetical protein [Synergistetes bacterium SGP1]
          Length = 377

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 6/107 (5%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           K++  N   FRN+A   L  D    +  G NG GKT+++E +  L+        S     
Sbjct: 4   KLEIHNYKLFRNFA---LELDGGVNLLCGPNGSGKTSVIEIVYALTRFLAIPDHSDTIAC 60

Query: 66  RIGSPSFFSTFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIR 111
            +     F TF R    E G  ++S+KLE   D   + L I D+ +R
Sbjct: 61  SVEDAFPFRTFCRWCTEENGWGEMSVKLEIESDE--QPLYIYDLTVR 105


>gi|91976764|ref|YP_569423.1| ATP-dependent OLD family endonuclease [Rhodopseudomonas palustris
          BisB5]
 gi|91683220|gb|ABE39522.1| ATP-dependent endonuclease of the OLD family-like
          [Rhodopseudomonas palustris BisB5]
          Length = 669

 Score = 39.3 bits (90), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 18/61 (29%), Positives = 34/61 (55%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +K + ++ FR++    +      T+FVG+N  GK+N ++A+  L+   G RR  Y + T 
Sbjct: 3  LKNMKLNSFRSFDQGEIELQKDLTVFVGENNGGKSNAIDAVRLLTTPLGGRREIYCESTD 62

Query: 67 I 67
          +
Sbjct: 63 V 63


>gi|320088176|emb|CBY97938.1| ATP-dependent Clp protease ATP-binding subunit clpX [Salmonella
          enterica subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
          Length = 396

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASY 61
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+AI   L P  RGF  + Y
Sbjct: 1  MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRLALFPFIRGFDASLY 59


>gi|16767037|ref|NP_462652.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|16422321|gb|AAL22611.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|267996020|gb|ACY90905.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 14028S]
 gi|312914778|dbj|BAJ38752.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. T000240]
 gi|321226808|gb|EFX51858.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. TN061786]
 gi|332990601|gb|AEF09584.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. UK-1]
          Length = 396

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASY 61
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+AI   L P  RGF  + Y
Sbjct: 1  MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRLALFPFIRGFDASLY 59


>gi|289667384|ref|ZP_06488459.1| hypothetical protein XcampmN_02412 [Xanthomonas campestris pv.
          musacearum NCPPB4381]
          Length = 231

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63
          +KIK + ++ FR Y+   +V     ++ VG N +GK+ ILEA+  F + G+G  +    D
Sbjct: 1  MKIKAVTVNRFRGYSEPVIVGLDDLSVLVGRNDIGKSTILEALDVFFNEGKGCIKLDKED 60

Query: 64 VTR 66
          + +
Sbjct: 61 INK 63


>gi|256824497|ref|YP_003148457.1| hypothetical protein Ksed_06300 [Kytococcus sedentarius DSM 20547]
 gi|256687890|gb|ACV05692.1| hypothetical protein Ksed_06300 [Kytococcus sedentarius DSM 20547]
          Length = 854

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 16/110 (14%)

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           D  F +   AL+       F GR+  +  R+ L G H+   ++            S GEQ
Sbjct: 582 DALFSEECAALRAPALHVEFVGRQGRAQRRKILSGKHKPSKVL------------SEGEQ 629

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           KV+ +  FLA ARL   T   AP++  D +S+ LD  + N + + V  + 
Sbjct: 630 KVLAIADFLAEARLAGIT---APVIFDDPVSS-LDHRRINEVAQRVASLA 675


>gi|262276826|ref|ZP_06054619.1| chromosome segregation protein SMC [alpha proteobacterium
          HIMB114]
 gi|262223929|gb|EEY74388.1| chromosome segregation protein SMC [alpha proteobacterium
          HIMB114]
          Length = 809

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 12/97 (12%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +K K + +S F+++A      F+   T  VG NG GK+N++EA+ +    +  +  R + 
Sbjct: 1  MKFKEIEVSGFKSFADKTNFYFEKGLTGIVGPNGCGKSNVVEALRWAMGETSAKSLRGSG 60

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97
            DV   G+ +  S        + + ++SIKLE  DD
Sbjct: 61 MEDVIFNGTSNRPS--------KNICEVSIKLENNDD 89


>gi|117921399|ref|YP_870591.1| hypothetical protein Shewana3_2959 [Shewanella sp. ANA-3]
 gi|117613731|gb|ABK49185.1| hypothetical protein Shewana3_2959 [Shewanella sp. ANA-3]
          Length = 533

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 16/77 (20%)

Query: 5  IKIKFLNI-SEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFLSPGRGFRRA-- 59
          +K+  L+I S F+N  ++++ FD  H  T+ VG NG GK+N+LEA+  +     FR    
Sbjct: 1  MKVDKLHIRSRFKNLENVKVDFDEDHLMTVVVGRNGSGKSNVLEALVAI-----FRNLDL 55

Query: 60 ------SYADVTRIGSP 70
                SY  + R+G P
Sbjct: 56 GEEPPFSYELIYRLGEP 72


>gi|323340827|ref|ZP_08081079.1| DNA repair protein RecN [Lactobacillus ruminis ATCC 25644]
 gi|323091950|gb|EFZ34570.1| DNA repair protein RecN [Lactobacillus ruminis ATCC 25644]
          Length = 562

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 29/49 (59%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L I +F     + L F +Q T+  G+ G GK+ I++A+  LS GRG
Sbjct: 2  LQELTIRDFAIIEKMDLEFQSQMTVLTGETGAGKSIIIDALGLLSGGRG 50


>gi|189426540|ref|YP_001953717.1| chromosome segregation protein SMC [Geobacter lovleyi SZ]
 gi|189422799|gb|ACD97197.1| chromosome segregation protein SMC [Geobacter lovleyi SZ]
          Length = 1177

 Score = 39.3 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 14/100 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAISFL---SPGRGFRRA 59
          +KIK L I+ F+++A  ++V D Q  +   VG NG GK+NI++A+ +       +  R  
Sbjct: 1  MKIKRLEIAGFKSFAD-KVVLDFQQGVTGVVGPNGCGKSNIVDAMRWCMGEQSAKNLRGK 59

Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99
          +  D+   GS S            G+A++S+   T D R+
Sbjct: 60 AMEDIIFAGSDS--------RKPLGMAEVSLVFSTEDGRA 91


>gi|238022683|ref|ZP_04603109.1| hypothetical protein GCWU000324_02592 [Kingella oralis ATCC 51147]
 gi|237865886|gb|EEP67022.1| hypothetical protein GCWU000324_02592 [Kingella oralis ATCC 51147]
          Length = 298

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 11/140 (7%)

Query: 32  FVGDNGVGKTNILEAISFLSP---------GRGFRRASYADVTRIG-SPSFFSTFARVEG 81
            +G NG GKT ++  ++ L P         G+   R S A+  +IG  P  F+ + ++  
Sbjct: 34  LLGHNGAGKTTLMSLLAGLQPVRHGAVLFDGKPLHRLSRAERQKIGLVPQDFAFYPQLSV 93

Query: 82  MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR 141
            + L   +   + RD   +R L     +     +  KHL    L   ++     ++  + 
Sbjct: 94  WDNLLFFASLYKMRDKNKLRGLIEQAGLQEHAHKAAKHLS-GGLKRRLNFAVGLVNAPQL 152

Query: 142 RFLDRMVFAIDPRHRRRMID 161
            FLD +   IDP+ RR ++D
Sbjct: 153 VFLDEITVGIDPQSRRFILD 172


>gi|260170441|ref|ZP_05756853.1| hypothetical protein BacD2_01103 [Bacteroides sp. D2]
 gi|315918795|ref|ZP_07915035.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692670|gb|EFS29505.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 589

 Score = 39.3 bits (90), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++I  ++I  FR   + R+ FD   TIFVG N  GKT+ + AI +   G+
Sbjct: 1  MRINHVHIRNFRKLRNCRIDFDENQTIFVGANNSGKTSAMSAIIWFLKGK 50


>gi|71027371|ref|XP_763329.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350282|gb|EAN31046.1| hypothetical protein TP03_0311 [Theileria parva]
          Length = 992

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 8/79 (10%)

Query: 7  IKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASY-- 61
          IK + +  FR Y  L L      +   VG NG GK+N+L A+SF+      GF R+ Y  
Sbjct: 3  IKLIRLKNFRTYKDLTLFSLSPNYNAIVGLNGSGKSNVLLAVSFVLGDSVPGFTRSDYLF 62

Query: 62 -ADVTRIGSPSFFSTFARV 79
            D +   SP  FS FA +
Sbjct: 63 KGDQSST-SPD-FSAFAEL 79


>gi|262375657|ref|ZP_06068889.1| chromosome segregation protein SMC [Acinetobacter lwoffii SH145]
 gi|262309260|gb|EEY90391.1| chromosome segregation protein SMC [Acinetobacter lwoffii SH145]
          Length = 1150

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F    T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLHFKDNRTAVVGPNGCGKSNVIDAIRWVMGESSARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|300767242|ref|ZP_07077154.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308180456|ref|YP_003924584.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum
          ST-III]
 gi|300495061|gb|EFK30217.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum
          ATCC 14917]
 gi|308045947|gb|ADN98490.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum
          ST-III]
          Length = 564

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L+I+ F     L + F+A  T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG 50


>gi|298676002|ref|YP_003727752.1| SMC domain-containing protein [Methanohalobium evestigatum Z-7303]
 gi|298288990|gb|ADI74956.1| SMC domain protein [Methanohalobium evestigatum Z-7303]
          Length = 888

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 28/173 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS---- 60
           +K+K L +   R+Y  L L F+   ++  G NG GK+++LEA  F +   G R  S    
Sbjct: 1   MKLKRLYVENIRSYEYLDLSFNNGVSVVSGANGSGKSSLLEA--FFTGLFGSRTLSKEYV 58

Query: 61  YADVTRIGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            AD+ R G+ S  S +  +E  G E + +   + +T++DR+           + V + N 
Sbjct: 59  LADMIRKGA-SKASIYLELEQNGNEYIIEQGFRYDTKNDRAYNS--------KSVFKSNG 109

Query: 119 HLRISWLVPSMDRIFSGLSMERRRF----------LDRMVFAIDPRHRRRMID 161
           ++ +     + D +   L+M+   +          +D ++ A  P+ R+ MID
Sbjct: 110 NIVVDQATQTYDAVCKLLNMDEEAYRNCVYIRQGEIDILINAT-PKERQNMID 161


>gi|254556513|ref|YP_003062930.1| DNA repair protein RecN [Lactobacillus plantarum JDM1]
 gi|254045440|gb|ACT62233.1| DNA repair protein RecN [Lactobacillus plantarum JDM1]
          Length = 564

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L+I+ F     L + F+A  T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG 50


>gi|311029251|ref|ZP_07707341.1| putative ABC transporter ATP-binding protein [Bacillus sp. m3-13]
          Length = 298

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 33/221 (14%)

Query: 32  FVGDNGVGKTNILEAIS-FLSPGRG---FRRASYADV-TRIG----SPSFFSTFARVEGM 82
            +G NG GKT  L+ ++  L+P  G   F   +  D   +IG     PSFFS     E +
Sbjct: 33  LLGPNGAGKTTTLQMLAGLLTPTSGNISFSENNEKDYRHQIGFLPQHPSFFSWMTPKEYL 92

Query: 83  EGLADIS----IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSM 138
           +    +S     +L+T+ + ++  + + DV         K+ RI      M +   GL+ 
Sbjct: 93  QFAGKLSHLPKAQLKTKIEETLEFVSLTDV---------KNKRIGGFSGGMKQRL-GLAQ 142

Query: 139 -----ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
                     LD  V A+DP  RR ++    +++ R  +L    F +      E Q+ + 
Sbjct: 143 ALLHDPELLILDEPVSALDPDGRRDVLKILTVLKSRMTIL----FSTHVLHDAE-QVCDT 197

Query: 194 GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
            + +   +++   +L SL  E+         + SLTG LDG
Sbjct: 198 VIMLKDGQIKWDGSLDSLRSEHTTSAVKIKTEESLTGQLDG 238


>gi|262369275|ref|ZP_06062603.1| chromosome segregation ATPase [Acinetobacter johnsonii SH046]
 gi|262315343|gb|EEY96382.1| chromosome segregation ATPase [Acinetobacter johnsonii SH046]
          Length = 1150

 Score = 38.9 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F    T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLHFKDNRTAVVGPNGCGKSNVIDAIRWVMGESSARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|191165831|ref|ZP_03027669.1| ATP binding protein [Escherichia coli B7A]
 gi|227883873|ref|ZP_04001678.1| ATP binding protein [Escherichia coli 83972]
 gi|190904155|gb|EDV63866.1| ATP binding protein [Escherichia coli B7A]
 gi|227839151|gb|EEJ49617.1| ATP binding protein [Escherichia coli 83972]
 gi|307555798|gb|ADN48573.1| ATP binding protein [Escherichia coli ABU 83972]
          Length = 465

 Score = 38.9 bits (89), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASY 61
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+A+   L P  RGF  + Y
Sbjct: 1  MRIDKLSLLNFRCFKQLDITFDEHITILVAPNGAGKTTVLDAVRLALFPFIRGFDASLY 59


>gi|300984863|ref|ZP_07177151.1| RecF/RecN/SMC protein [Escherichia coli MS 45-1]
 gi|300408292|gb|EFJ91830.1| RecF/RecN/SMC protein [Escherichia coli MS 45-1]
 gi|315292954|gb|EFU52306.1| RecF/RecN/SMC protein [Escherichia coli MS 153-1]
          Length = 465

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASY 61
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+A+   L P  RGF  + Y
Sbjct: 1  MRIDKLSLLNFRCFKQLDITFDEHITILVAPNGAGKTTVLDAVRLALFPFIRGFDASLY 59


>gi|291296300|ref|YP_003507698.1| ABC transporter-like protein [Meiothermus ruber DSM 1279]
 gi|290471259|gb|ADD28678.1| ABC transporter related protein [Meiothermus ruber DSM 1279]
          Length = 335

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 30 TIFVGDNGVGKTNILEAISFLSPGRGFRRASY-ADVTRIGS-PSFFSTFARVEGMEGLA 86
          T+ +G++GVGKT++L+AI+ L P RG   A   A+  R+G  P   + F  +   + +A
Sbjct: 23 TVLLGESGVGKTSLLKAIAGLIPARGQPFAGLRAEARRVGYLPQHLALFPHLRAWQNVA 81


>gi|164686808|ref|ZP_02210836.1| hypothetical protein CLOBAR_00404 [Clostridium bartlettii DSM
          16795]
 gi|164604198|gb|EDQ97663.1| hypothetical protein CLOBAR_00404 [Clostridium bartlettii DSM
          16795]
          Length = 581

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K L+I+ FRN+ S+ +  D ++ +F G N VGKTN L A+ FL
Sbjct: 3  LKKLDINNFRNFNSISIELDNKNVVF-GMNDVGKTNFLYALRFL 45


>gi|225848653|ref|YP_002728816.1| ATP/GTP-binding protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643843|gb|ACN98893.1| ATP/GTP-binding protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 484

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 11/107 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63
           +K++ +NI  FR Y     V     T+FVG N  GK++ILEA+  F + GR   R +  D
Sbjct: 1   MKLRKINIENFRCYKDETEVEIEDLTVFVGANDSGKSSILEALDIFFNEGRAEIRFTEDD 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           +         +  AR+EG   +  I+   E   ++ +R L+ N++ I
Sbjct: 61  I---------NIHARMEGKHDVK-ITCVFEDIPEQFLRRLEENNIPI 97


>gi|218678131|ref|ZP_03526028.1| ATP-dependent endonuclease of the OLD family-like protein
          [Rhizobium etli CIAT 894]
          Length = 85

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 7/55 (12%)

Query: 7  IKFLNISEFRNYASLRL---VFDAQH----TIFVGDNGVGKTNILEAISFLSPGR 54
          ++ L+I  FR +++  +   V +  H    T+FVG+NG GKT++LEA+ +L  GR
Sbjct: 8  VRELSIDNFRCFSAETIKLAVPNGSHGSGLTLFVGNNGTGKTSVLEALDYLFSGR 62


>gi|28378306|ref|NP_785198.1| DNA repair protein RecN [Lactobacillus plantarum WCFS1]
 gi|28271141|emb|CAD64046.1| DNA repair protein RecN [Lactobacillus plantarum WCFS1]
          Length = 564

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L+I+ F     L + F+A  T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG 50


>gi|197303925|ref|ZP_03168957.1| hypothetical protein RUMLAC_02662 [Ruminococcus lactaris ATCC
          29176]
 gi|197296893|gb|EDY31461.1| hypothetical protein RUMLAC_02662 [Ruminococcus lactaris ATCC
          29176]
          Length = 517

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63
          +KI  + I  FR Y     +     T+FVG N +GK+ ILEA+  F + G+G  +    D
Sbjct: 1  MKIDSIKIKNFRGYKDETKIELNDLTVFVGKNDIGKSTILEALDIFFNDGKGVIKLDKTD 60

Query: 64 VT 65
          V 
Sbjct: 61 VN 62


>gi|1335781|gb|AAC47078.1| Cap [Drosophila melanogaster]
          Length = 1231

 Score = 38.9 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 3  NRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          N++ IK + I  F++Y    +V  FD +H + VG NG GK+N   AI F+
Sbjct: 30 NKMHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFV 79


>gi|108800975|ref|YP_641172.1| ABC transporter related [Mycobacterium sp. MCS]
 gi|119870115|ref|YP_940067.1| ABC transporter related [Mycobacterium sp. KMS]
 gi|126436812|ref|YP_001072503.1| ABC transporter related [Mycobacterium sp. JLS]
 gi|108771394|gb|ABG10116.1| ABC transporter related protein [Mycobacterium sp. MCS]
 gi|119696204|gb|ABL93277.1| ABC transporter related protein [Mycobacterium sp. KMS]
 gi|126236612|gb|ABO00013.1| ABC transporter related protein [Mycobacterium sp. JLS]
          Length = 537

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +LLLDE + +LD D RNAL+  + D    + +   D+ + D ++  A+  R
Sbjct: 161 VLLLDEPTNNLDADARNALYAALDDFAGTLLLVSHDRVLLDRMDRIAELSR 211


>gi|4324607|gb|AAD16951.1| putative ATP binding protein SugR [Salmonella enterica subsp.
          enterica serovar Typhimurium]
          Length = 519

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG-RGFRRASY 61
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+AI   L P  RGF  + Y
Sbjct: 1  MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRLALFPFIRGFDASLY 59


>gi|284929017|ref|YP_003421539.1| RecF/RecN/SMC N-terminal domain-containing protein
          [cyanobacterium UCYN-A]
 gi|284809476|gb|ADB95181.1| RecF/RecN/SMC N-terminal domain-containing protein
          [cyanobacterium UCYN-A]
          Length = 1008

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          L +  F +Y  + L F   HT+ + G NG GK+++LEAI++   G+G R +S  DV
Sbjct: 6  LTLKNFLSYQDVTLDFQGLHTVCICGANGAGKSSLLEAIAWTVWGQG-RTSSDEDV 60


>gi|255102069|ref|ZP_05331046.1| V-type ATP synthase subunit C [Clostridium difficile QCD-63q42]
          Length = 325

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 33/69 (47%)

Query: 11  NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70
           N+  F    +++  FD    +FV    + K   LEA S  +P   F+  SY DV + G  
Sbjct: 196 NLKSFIRVKNMKKDFDMFMNVFVSGGSLDKEKFLEAFSSDTPASCFKSTSYFDVCKNGMD 255

Query: 71  SFFSTFARV 79
           S F+ F ++
Sbjct: 256 SGFTVFEKL 264


>gi|312865861|ref|ZP_07726083.1| putative DNA replication and repair protein RecF [Streptococcus
           downei F0415]
 gi|311098736|gb|EFQ56958.1| putative DNA replication and repair protein RecF [Streptococcus
           downei F0415]
          Length = 94

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S G+Q+ +++ + LA   LI   TG +PILLLD++ + LD  ++  L   + +   Q F
Sbjct: 6   ASQGQQRSLILSLKLAEIELIKAITGDSPILLLDDVMSELDNHRQLRLLDGIKE-NVQTF 64

Query: 347 MTGTDKSVFDSLNETAKFMRISN 369
           +T T       L +  K   +S 
Sbjct: 65  ITTTSLDHLQGLPDDLKIFTVSQ 87


>gi|169347061|ref|ZP_02866003.1| conserved hypothetical protein [Clostridium perfringens C str.
          JGS1495]
 gi|169296744|gb|EDS78873.1| conserved hypothetical protein [Clostridium perfringens C str.
          JGS1495]
          Length = 579

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K K L I  FRN+  + +  D ++ IF G N +GKTN L AI FL
Sbjct: 1  MKFKSLEIKNFRNFECININLDNKNVIF-GMNDIGKTNFLYAIRFL 45


>gi|325271471|ref|ZP_08137992.1| hypothetical protein G1E_01626 [Pseudomonas sp. TJI-51]
 gi|324103395|gb|EGC00721.1| hypothetical protein G1E_01626 [Pseudomonas sp. TJI-51]
          Length = 435

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 24/82 (29%)

Query: 7  IKFLNISEFRNYASLRLVFDA-----QHTIFVGDNGVGKTNILEAISF------------ 49
          I+F NI  F++++   L F+      Q T+F+GDNG GKT IL AI+             
Sbjct: 8  IQFSNIRGFKDFS---LSFEEGKKHRQWTVFIGDNGHGKTTILRAIALGLGDEVTSSELL 64

Query: 50 -LSPGRGFR---RASYADVTRI 67
           L PG+  R   R  YA  ++I
Sbjct: 65 ALLPGKFIRMNKRGIYAPSSKI 86


>gi|120601903|ref|YP_966303.1| SMC domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120562132|gb|ABM27876.1| SMC domain protein [Desulfovibrio vulgaris DP4]
          Length = 556

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL 50
          +++ +  + +F+N   + + FD  H  T+ +G NG GK+N+LEA++ L
Sbjct: 1  MRLDWFWVEDFKNLKDVTIDFDESHWVTVVIGWNGTGKSNVLEALATL 48


>gi|17933343|gb|AAL48252.1|AF451891_2 RecN [Lactobacillus plantarum subsp. plantarum]
          Length = 420

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L+I+ F     L + F+A  T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG 50


>gi|150388685|ref|YP_001318734.1| SMC domain-containing protein [Alkaliphilus metalliredigens QYMF]
 gi|149948547|gb|ABR47075.1| SMC domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 438

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 33/48 (68%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAISFL 50
          +K++++ +  ++N   + + F+ Q ++  F+G+NG GK+NILE I+ +
Sbjct: 1  MKMEYIYVHGYKNLNDIEIYFEPQSSVNSFIGNNGSGKSNILEVIAII 48


>gi|323388484|gb|ADX60531.1| RecN [Geobacillus sp. NTU 03]
          Length = 573

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 26/46 (56%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG
Sbjct: 5  LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG 50


>gi|126663754|ref|ZP_01734750.1| hypothetical protein FBBAL38_11809 [Flavobacteria bacterium BAL38]
 gi|126624337|gb|EAZ95029.1| hypothetical protein FBBAL38_11809 [Flavobacteria bacterium BAL38]
          Length = 400

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 24/205 (11%)

Query: 86  ADISIKLETRDDRSVRCLQINDVVIRVVDELN--------KHLRISWLVPSMDRIFSGLS 137
           ++  +K+ET D R     Q +D+ I V  +LN        K + I  L+P+    F   +
Sbjct: 32  SEAKVKVETSDIRIFSDEQYSDLGIEVTSDLNDCDVLFGVKEVPIDALLPNKKYFFFSHT 91

Query: 138 MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK- 196
           ++++ +  +++ AI  ++   + D E ++   N+ L  G+   +            G+K 
Sbjct: 92  IKKQSYNRKLLQAILEKN-IELYDHETIVDATNKRLI-GFGRYAGIVGAYNGFRAFGIKY 149

Query: 197 --INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
              N+A+ E +     LI   ++++  P+IK+ LTG   GK            AK++ DG
Sbjct: 150 DLFNVAKAETLKNREDLIAR-LKRQTLPNIKIVLTGH--GKVGMG--------AKEILDG 198

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCD 279
            K+  ++    +    S+ +    D
Sbjct: 199 IKIKQVAIEDFLSKQYSEPVYTQID 223


>gi|86607501|ref|YP_476264.1| chromosome segregation protein SMC [Synechococcus sp. JA-3-3Ab]
 gi|86556043|gb|ABD01001.1| chromosome segregation protein SMC [Synechococcus sp. JA-3-3Ab]
          Length = 1180

 Score = 38.9 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 7/78 (8%)

Query: 7  IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62
          IK + ++ F+++ S   L      T+  G NG GK+NIL+ I F   LS  RG R    +
Sbjct: 3  IKRIELTRFKSFGSTTSLPLLPGFTVISGPNGSGKSNILDGILFALGLSSSRGMRAERLS 62

Query: 63 DVTRIGSPSFFSTFARVE 80
          D+   GS    S+  RVE
Sbjct: 63 DLVHSGS---LSSNRRVE 77


>gi|145298233|ref|YP_001141074.1| chromosome segregation protein SMC [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142851005|gb|ABO89326.1| chromosome segregation protein SMC [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 1124

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++K + ++ F+++    R+ F A  T  VG NG GK+N+++A+ ++   S  R  R  +
Sbjct: 1  MRLKLIKLAGFKSFVEPTRIEFSADMTAVVGPNGCGKSNVIDAVRWVLGESSARHLRGEN 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MTDVIFNGS 69


>gi|120609373|ref|YP_969051.1| hypothetical protein Aave_0676 [Acidovorax citrulli AAC00-1]
 gi|120587837|gb|ABM31277.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
          Length = 712

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + I  L++  +RN+A+ +L+F       +G+NG GKTN+  AI  L      R A     
Sbjct: 1  MHISKLSLVNYRNFANTKLLFQKGINTIIGENGSGKTNLFRAIRLLLDDNMIRSA----- 55

Query: 65 TRIGSPSFFSTFARVEG 81
           R+ S  F     R +G
Sbjct: 56 YRLESTDFHRGLGRWQG 72


>gi|11498637|ref|NP_069865.1| chromosome segregation protein [Archaeoglobus fulgidus DSM 4304]
 gi|18201999|sp|O29230|RAD50_ARCFU RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|2649562|gb|AAB90211.1| purine NTPase, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 886

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--ADV 64
          +K L I  FR+++  ++ FD    +  G NG GK++ILEAI  L    G + A+    D+
Sbjct: 4  LKELQIKNFRSHSDSKIEFDTGINLIAGRNGAGKSSILEAI--LVAFYGLKPATLRKNDL 61

Query: 65 TRIGSPSF 72
           R+ S  +
Sbjct: 62 VRVNSSGY 69


>gi|326385841|ref|ZP_08207469.1| ATP-dependent OLD family endonuclease [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326209678|gb|EGD60467.1| ATP-dependent OLD family endonuclease [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 255

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 10 LNISEFRNYASLR----LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          L  +  +NY S+R       +A  TI VG N  GKT +L+A+  ++P +G +R
Sbjct: 3  LKTAHIQNYRSIRDTGVFEIEAGKTILVGPNEAGKTAVLQALQQINPPKGIKR 55


>gi|212638792|ref|YP_002315312.1| DNA repair ATPase [Anoxybacillus flavithermus WK1]
 gi|212560272|gb|ACJ33327.1| ATPase involved in DNA repair [Anoxybacillus flavithermus WK1]
          Length = 576

 Score = 38.9 bits (89), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL L F+   T+  G+ G GK+ I++AI  L  GRG      A+  R G 
Sbjct: 5  LSIKNFAIIESLSLSFEKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVRYG- 58

Query: 70 PSFFSTFARVEGM 82
               T A +EG+
Sbjct: 59 ----ETKAEIEGL 67


>gi|312095128|ref|XP_003148257.1| hypothetical protein LOAG_12697 [Loa loa]
 gi|307756577|gb|EFO15811.1| hypothetical protein LOAG_12697 [Loa loa]
          Length = 417

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS----VRCLQINDVVIRVVDELNK 118
           D   I SPS FS   + EG+E L  I   L+   +R     +  +         + +L +
Sbjct: 297 DQISILSPSLFSMHDKGEGLEALTSIPGLLKVAGNRDYEEWLNFIMEASGTTDAIHKLKE 356

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
              + WL P    +  G+  +   F    V  IDP   R+M  FE L
Sbjct: 357 EQELDWLPPGYKSMQRGIDGQPMYFTKENVTEIDPEMARKMELFENL 403


>gi|238029044|ref|YP_002913269.1| hypothetical protein bglu_4p0730 [Burkholderia glumae BGR1]
 gi|237880621|gb|ACR32949.1| Hypothetical protein bglu_4p0730 [Burkholderia glumae BGR1]
          Length = 767

 Score = 38.5 bits (88), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          +  I ++++ + +FR    ++L  D Q TI VG N  GKT IL A+  FL+    F
Sbjct: 9  SGSITLRYVELCKFRRLGKVQLDLDPQTTILVGANNSGKTAILTALRHFLAESSPF 64


>gi|56964224|ref|YP_175955.1| DNA repair protein RecN [Bacillus clausii KSM-K16]
 gi|56910467|dbj|BAD64994.1| DNA repair protein RecN [Bacillus clausii KSM-K16]
          Length = 565

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL + F+   T+  G+ G GK+ I++AI+ L  GRG      A+  R G 
Sbjct: 5   LSIKNFAIIRSLTVPFEKGLTVLTGETGAGKSIIIDAIALLLGGRG-----SAEFVRFGE 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
                  A +EG+  + +    L+  D   V C
Sbjct: 60  KR-----AEIEGLFAIGENHPALKKLDPIGVEC 87


>gi|206579854|ref|YP_002237036.1| OLD family TOPRIM nucleotidyl transferase/hydrolase domain
          protein [Klebsiella pneumoniae 342]
 gi|206568912|gb|ACI10688.1| OLD family TOPRIM nucleotidyl transferase/hydrolase domain
          protein [Klebsiella pneumoniae 342]
          Length = 583

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 10/83 (12%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA---DVTR 66
          L IS FR+   + +      T+ VG+N  GK+N+++AI  L+     RR  Y    DV R
Sbjct: 6  LKISRFRSCDDVTVSLRPDLTVLVGENNGGKSNVVDAIRLLTLPLSGRRERYPEDEDVRR 65

Query: 67 IGS-PSFFSTFARVEG-MEGLAD 87
            + PSF     ++EG  +GL+D
Sbjct: 66 YSTVPSF-----QIEGAFQGLSD 83


>gi|320352797|ref|YP_004194136.1| Sigma 54 interacting domain-containing protein [Desulfobulbus
           propionicus DSM 2032]
 gi|320121299|gb|ADW16845.1| Sigma 54 interacting domain protein [Desulfobulbus propionicus DSM
           2032]
          Length = 575

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 13/131 (9%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHT---IFVGDNGVGKTNILEAISFLSPGRGFRRA 59
            R  ++ L +       +L L   AQ T   +  G+ G GK+ IL+AI+ L+ GRG    
Sbjct: 9   ERTMLQELRVHNLALIDALHLDLSAQKTGLIVLTGETGAGKSIILQAINLLTGGRGTASW 68

Query: 60  SYADVTRIGSPSFFS---------TFARVEGM-EGLADISIKLETRDDRSVRCLQINDVV 109
             +D  + G  + F+         T    + + EG   I  ++ TR+ RS   +    V 
Sbjct: 69  VRSDCDQAGIEAIFAIRPDHAELNTLLSEQALKEGTTCIVRRILTREGRSKVYVNDQPVT 128

Query: 110 IRVVDELNKHL 120
            R+  EL   L
Sbjct: 129 TRLAGELTAGL 139


>gi|315604348|ref|ZP_07879414.1| SMC structural maintenance of chromosomes partitioning protein
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314054|gb|EFU62105.1| SMC structural maintenance of chromosomes partitioning protein
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 1194

 Score = 38.5 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 25/174 (14%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
           +K L +  F+++AS   L      T  VG NG GK+N+++A++++      R  R    A
Sbjct: 3   LKNLTLRGFKSFASATTLALQPGITCVVGPNGSGKSNVVDALAWVMGEQGARALRGGQMA 62

Query: 63  DVTRIGSPSFFSTFAR------VEGMEGLADISIKLETRDDRSVRC----LQINDVVIRV 112
           DV   G+ S  +   R      ++  +GL DI     T      R       IN   +R+
Sbjct: 63  DVIFAGT-SGRAALGRAQVDLTIDNTDGLLDIEYSEVTISRTLFRGGGSEYSINGTPVRL 121

Query: 113 VD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
           +D         + + + +      +D I S    ERR F++     +  +HRRR
Sbjct: 122 LDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEAAGVL--KHRRR 173


>gi|295396106|ref|ZP_06806289.1| ATP-dependent endonuclease [Brevibacterium mcbrellneri ATCC
          49030]
 gi|294971047|gb|EFG46939.1| ATP-dependent endonuclease [Brevibacterium mcbrellneri ATCC
          49030]
          Length = 83

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 16/84 (19%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRR----- 58
          +K++ L I  FR   + +++F   +T+ VG+N VGK+ + EA+   L P R  RR     
Sbjct: 1  MKVRQLEIENFRGVRAGKVIF-VDNTLLVGENNVGKSTVCEALDLVLGPERTSRRPVVDE 59

Query: 59 ---------ASYADVTRIGSPSFF 73
                    S    TRIG+ S  
Sbjct: 60 HDFHRSTEATSDGGTTRIGASSMI 83


>gi|148642180|ref|YP_001272693.1| purine NTPase involved in DNA repair, Rad50 [Methanobrevibacter
          smithii ATCC 35061]
 gi|148551197|gb|ABQ86325.1| purine NTPase involved in DNA repair, Rad50 [Methanobrevibacter
          smithii ATCC 35061]
          Length = 917

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          L ++ F++Y    + F    T+ VG+NG GK+ ILEAISF
Sbjct: 6  LTLNNFKSYGHEVIKFGDGITVIVGENGAGKSTILEAISF 45


>gi|261350818|ref|ZP_05976235.1| putative RecF/RecN/SMC N domain protein [Methanobrevibacter
          smithii DSM 2374]
 gi|288860436|gb|EFC92734.1| putative RecF/RecN/SMC N domain protein [Methanobrevibacter
          smithii DSM 2374]
          Length = 917

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          L ++ F++Y    + F    T+ VG+NG GK+ ILEAISF
Sbjct: 6  LTLNNFKSYGHEVIKFGDGITVIVGENGAGKSTILEAISF 45


>gi|222444642|ref|ZP_03607157.1| hypothetical protein METSMIALI_00254 [Methanobrevibacter smithii
          DSM 2375]
 gi|222434207|gb|EEE41372.1| hypothetical protein METSMIALI_00254 [Methanobrevibacter smithii
          DSM 2375]
          Length = 917

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          L ++ F++Y    + F    T+ VG+NG GK+ ILEAISF
Sbjct: 6  LTLNNFKSYGHEVIKFGDGITVIVGENGAGKSTILEAISF 45


>gi|298345307|ref|YP_003717994.1| SMC structural maintenance of chromosomes partitioning protein
           [Mobiluncus curtisii ATCC 43063]
 gi|298235368|gb|ADI66500.1| SMC structural maintenance of chromosomes partitioning protein
           [Mobiluncus curtisii ATCC 43063]
          Length = 1201

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 38/242 (15%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62
           +K L +  F+++A ++ +  +   T  VG NG GK+N+++A++++   +G    R +  +
Sbjct: 3   LKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQMS 62

Query: 63  DVTRIGSPSFFSTFARVEGMEGL--ADISIKLETRDDRSVRCL--------QINDVVIRV 112
           DV   G+ +  +   R E    +  +D ++ +E  +    R +         IN   +R+
Sbjct: 63  DVIFAGTKT-KAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVRL 121

Query: 113 VD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR--RRMIDF 162
           +D         + + + +      +DRI S   +ERR F++     +  R R  R +   
Sbjct: 122 LDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHRQRKDRALKKL 181

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR------VEMINALSSLIMEYV 216
           E L    +R+           + +  ++  LG +   AR       E+ +A + LI + V
Sbjct: 182 ENLAVNLSRV-------QDLTNEVAKRLGPLGKQAEAARKAARVQAELADATARLIADAV 234

Query: 217 QK 218
            +
Sbjct: 235 AQ 236


>gi|119871816|ref|YP_929823.1| SMC domain-containing protein [Pyrobaculum islandicum DSM 4184]
 gi|119673224|gb|ABL87480.1| SMC domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 702

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
           S GEQ ++ + + +A AR +    G AP ++ DE + HLDE+ R  +  ++ D+ S
Sbjct: 626 SLGEQNLLAISLRVALARAL---LGGAPFMMFDEPTEHLDEEHRRKIVELIRDLTS 678


>gi|315656359|ref|ZP_07909248.1| chromosome segregation protein SMC [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492918|gb|EFU82520.1| chromosome segregation protein SMC [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 1201

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 38/242 (15%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62
           +K L +  F+++A ++ +  +   T  VG NG GK+N+++A++++   +G    R +  +
Sbjct: 3   LKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQMS 62

Query: 63  DVTRIGSPSFFSTFARVEGMEGL--ADISIKLETRDDRSVRCL--------QINDVVIRV 112
           DV   G+ +  +   R E    +  +D ++ +E  +    R +         IN   +R+
Sbjct: 63  DVIFAGTKT-KAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVRL 121

Query: 113 VD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR--RRMIDF 162
           +D         + + + +      +DRI S   +ERR F++     +  R R  R +   
Sbjct: 122 LDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHRQRKDRALKKL 181

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR------VEMINALSSLIMEYV 216
           E L    +R+           + +  ++  LG +   AR       E+ +A + LI + V
Sbjct: 182 ENLAVNLSRV-------QDLTNEVAKRLGPLGKQAEAARKAARVQAELADATARLIADAV 234

Query: 217 QK 218
            +
Sbjct: 235 AQ 236


>gi|304390864|ref|ZP_07372816.1| SMC structural maintenance of chromosomes partitioning protein
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304325747|gb|EFL92993.1| SMC structural maintenance of chromosomes partitioning protein
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 1201

 Score = 38.5 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 38/242 (15%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62
           +K L +  F+++A ++ +  +   T  VG NG GK+N+++A++++   +G    R +  +
Sbjct: 3   LKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQMS 62

Query: 63  DVTRIGSPSFFSTFARVEGMEGL--ADISIKLETRDDRSVRCL--------QINDVVIRV 112
           DV   G+ +  +   R E    +  +D ++ +E  +    R +         IN   +R+
Sbjct: 63  DVIFAGTKT-KAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVRL 121

Query: 113 VD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR--RRMIDF 162
           +D         + + + +      +DRI S   +ERR F++     +  R R  R +   
Sbjct: 122 LDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHRQRKDRALKKL 181

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR------VEMINALSSLIMEYV 216
           E L    +R+           + +  ++  LG +   AR       E+ +A + LI + V
Sbjct: 182 ENLAVNLSRV-------QDLTNEVAKRLGPLGKQAEAARKAARVQAELADATARLIADAV 234

Query: 217 QK 218
            +
Sbjct: 235 AQ 236


>gi|260773571|ref|ZP_05882487.1| hypothetical protein VIB_002045 [Vibrio metschnikovii CIP 69.14]
 gi|260612710|gb|EEX37913.1| hypothetical protein VIB_002045 [Vibrio metschnikovii CIP 69.14]
          Length = 553

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 16/77 (20%)

Query: 5  IKIKFLNI-SEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFLSPGRGFRRA-- 59
          +K+  L+I S F+N  ++ + FD  H  T+ VG NG GK+N+LEA+  +     FR    
Sbjct: 1  MKVDKLHIRSRFKNLENVTVDFDEDHLMTVVVGRNGSGKSNVLEALVAI-----FRNLDL 55

Query: 60 ------SYADVTRIGSP 70
                SY  V R+G P
Sbjct: 56 GEVPPFSYELVYRLGEP 72


>gi|295692560|ref|YP_003601170.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus ST1]
 gi|295030666|emb|CBL50145.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus ST1]
          Length = 212

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 17/119 (14%)

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
           ++ RK+D   ++     ++ DL  D+ DK IT   G  GE++ V          LI N  
Sbjct: 101 YEIRKVDVNDKQIADLLNQVDLSADFLDKKITALSG--GEKQRV---------ALIRNII 149

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNETAKFMRI 367
               ILLLDE++  LD   ++ +  ++ D+   G  I     D+S  D   E +  +R+
Sbjct: 150 FLPEILLLDEVTTGLDNQSKDIVHNLIKDVSEKGVTIIQVTHDQSEID---EASNILRV 205


>gi|83719658|ref|YP_443234.1| hypothetical protein BTH_I2720 [Burkholderia thailandensis E264]
 gi|257139468|ref|ZP_05587730.1| hypothetical protein BthaA_09741 [Burkholderia thailandensis E264]
 gi|83653483|gb|ABC37546.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 784

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 22/134 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY-- 61
           + I+F+ I+ FR   S R+    + T+FVG N  GKT+ + A+  FL+P    RR  +  
Sbjct: 1   MHIEFVEIANFRKLLSARVDLSLKTTLFVGANNSGKTSAMLALRRFLTP----RRCPFDI 56

Query: 62  ADVTRIGSPSFF---STFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVV-DEL 116
            D T    P+      T+ +   +EG+A D+++      D  V+ L   D+ ++V  DE+
Sbjct: 57  HDFTLCHLPALVDIGETWLQAN-LEGVATDLTL------DPWVQALPALDLWLQVKEDEV 109

Query: 117 NKHLRISWLVPSMD 130
           +   R+  LVP MD
Sbjct: 110 H---RVRDLVPLMD 120


>gi|308456383|ref|XP_003090636.1| hypothetical protein CRE_25955 [Caenorhabditis remanei]
 gi|308262100|gb|EFP06053.1| hypothetical protein CRE_25955 [Caenorhabditis remanei]
          Length = 386

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 10 LNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYADVT 65
          L I  F++Y    L+   ++ T  +G NG GK+N+++AISF+    PG   R   Y D+ 
Sbjct: 19 LEIENFKSYKGFHLIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPG-SLRVKKYTDLI 77

Query: 66 RIGSP 70
            G+P
Sbjct: 78 H-GAP 81


>gi|91776973|ref|YP_546729.1| hypothetical protein Mfla_2624 [Methylobacillus flagellatus KT]
 gi|91710960|gb|ABE50888.1| conserved hypothetical protein [Methylobacillus flagellatus KT]
          Length = 505

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63
          +KIK + ++ FR+Y+S   V      + VG N +GK+ ILEA+  F + G+G  +    D
Sbjct: 1  MKIKAVTVNRFRSYSSPVTVQVDDLLVLVGRNDIGKSTILEALDIFFNEGKGCVKIDKDD 60

Query: 64 VTR 66
          + +
Sbjct: 61 INK 63


>gi|85858660|ref|YP_460862.1| ATP-dependent endonuclease family protein [Syntrophus
          aciditrophicus SB]
 gi|85721751|gb|ABC76694.1| ATP-dependent endonuclease family protein [Syntrophus
          aciditrophicus SB]
          Length = 636

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
          ++I  L I  FR   +  ++  ++H++ +GDN  GKT ILEAI   L P R   R    D
Sbjct: 1  MQISRLIIKNFRGIQNASIIL-SKHSVLIGDNNTGKTTILEAIDLALGPDR-LNRVPPVD 58

Query: 64 V 64
          V
Sbjct: 59 V 59


>gi|304373610|ref|YP_003858355.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          RB16]
 gi|299829566|gb|ADJ55359.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          RB16]
          Length = 565

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 6  KIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          KIK+ NI    N   + L FD A+ T+  G NG GK+ ++EA+++   G+ FR
Sbjct: 7  KIKYQNILSVGN-TPIELEFDTAKKTLITGKNGGGKSTLIEALTYALFGKSFR 58


>gi|227877206|ref|ZP_03995280.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus crispatus JV-V01]
 gi|256842760|ref|ZP_05548248.1| ABC transporter ATPase [Lactobacillus crispatus 125-2-CHN]
 gi|256848930|ref|ZP_05554364.1| ABC transporter ATPase component [Lactobacillus crispatus MV-1A-US]
 gi|262045727|ref|ZP_06018691.1| ABC transporter ATPase component [Lactobacillus crispatus MV-3A-US]
 gi|293380205|ref|ZP_06626287.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus
           214-1]
 gi|312977720|ref|ZP_07789467.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus
           CTV-05]
 gi|227863260|gb|EEJ70705.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus crispatus JV-V01]
 gi|256614180|gb|EEU19381.1| ABC transporter ATPase [Lactobacillus crispatus 125-2-CHN]
 gi|256714469|gb|EEU29456.1| ABC transporter ATPase component [Lactobacillus crispatus MV-1A-US]
 gi|260573686|gb|EEX30242.1| ABC transporter ATPase component [Lactobacillus crispatus MV-3A-US]
 gi|290923249|gb|EFE00170.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus
           214-1]
 gi|310895459|gb|EFQ44526.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus
           CTV-05]
          Length = 212

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 17/119 (14%)

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
           ++ RK+D   ++     ++ DL  D+ DK IT   G  GE++ V          LI N  
Sbjct: 101 YEIRKVDVNDKQIADLLNQVDLSADFLDKKITALSG--GEKQRV---------ALIRNII 149

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNETAKFMRI 367
               ILLLDE++  LD   ++ +  ++ D+   G  I     D+S  D   E +  +R+
Sbjct: 150 FLPKILLLDEVTTGLDNQSKDIVHNLIKDVSEKGVTIIQVTHDQSEID---EASNILRV 205


>gi|241204311|ref|YP_002975407.1| SMC domain protein [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858201|gb|ACS55868.1| SMC domain protein [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 818

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+I  ++I EFR    L L    Q+    G NG GK+ I++AI F+  G
Sbjct: 2  IRIDKIHIKEFRGIRELTLTLKGQNFAACGPNGTGKSGIVDAIEFVLTG 50


>gi|66391506|ref|YP_239031.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          RB43]
 gi|62288594|gb|AAX78577.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          RB43]
          Length = 567

 Score = 38.5 bits (88), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 6  KIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          KIK+ NI    N   + L FD A+ T+  G NG GK+ ++EA+++   G+ FR
Sbjct: 7  KIKYQNILSVGN-TPIELEFDTAKKTLITGKNGGGKSTLIEALTYALFGKSFR 58


>gi|220905820|ref|YP_002481131.1| SMC domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219862431|gb|ACL42770.1| SMC domain protein [Cyanothece sp. PCC 7425]
          Length = 430

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +++K L +  FR + +L L F + + T+F G NGVGK++IL+ ++ L
Sbjct: 1  MRVKSLKMQNFRGFENLTLDFSETEPTVFFGINGVGKSSILDCLAIL 47


>gi|217968007|ref|YP_002353513.1| SMC domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217337106|gb|ACK42899.1| SMC domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 978

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          IK+  L +S F+ Y + R+ F  Q  I + G N  GK+ I EAI+F   G+     S  +
Sbjct: 2  IKLVSLKLSNFKQYQNARIEFPEQGKILIKGKNEAGKSTIFEAIAFALFGKPVYVGSKPN 61

Query: 64 VTRIGS 69
          + R  +
Sbjct: 62 LIRFNA 67


>gi|20808433|ref|NP_623604.1| ATPase involved in DNA repair [Thermoanaerobacter tengcongensis
          MB4]
 gi|20517049|gb|AAM25208.1| ATPase involved in DNA repair [Thermoanaerobacter tengcongensis
          MB4]
          Length = 549

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 31/47 (65%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          IK + +  F+++ +  + F+ ++T+  GDNG GKT+I EAI++   G
Sbjct: 3  IKSITLKNFKSHKNTIINFNDKNTVIYGDNGTGKTSIGEAIAWCLTG 49


>gi|257094930|ref|YP_003168571.1| SMC domain-containing protein [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257047454|gb|ACV36642.1| SMC domain protein [Candidatus Accumulibacter phosphatis clade
          IIA str. UW-1]
          Length = 489

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 29/44 (65%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +++K + ++ FR + S  +    + ++FVG+NG GKT +L+ I+
Sbjct: 14 MRLKKITLNNFRCFESFEVTLHPRLSVFVGENGAGKTAVLDGIA 57


>gi|160901531|ref|YP_001567112.1| ABC transporter related [Petrotoga mobilis SJ95]
 gi|160359175|gb|ABX30789.1| ABC transporter related [Petrotoga mobilis SJ95]
          Length = 256

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 13/91 (14%)

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
           +++Y +K  +   G  GE++ V++      AR I+  T   PILLLDE S+HLD     +
Sbjct: 128 LINYKNKPFSSMSG--GEKQKVMI------ARAIAQRT---PILLLDEFSSHLDPGYTQS 176

Query: 334 LFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           L ++V ++ ++     T  +VF  +N  A F
Sbjct: 177 LLKLVKEMVTK--EKKTVLAVFHDVNNAALF 205


>gi|315655727|ref|ZP_07908625.1| chromosome segregation protein SMC [Mobiluncus curtisii ATCC 51333]
 gi|315489791|gb|EFU79418.1| chromosome segregation protein SMC [Mobiluncus curtisii ATCC 51333]
          Length = 1201

 Score = 38.5 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 50/242 (20%), Positives = 105/242 (43%), Gaps = 38/242 (15%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62
           +K L +  F+++A ++ +  +   T  VG NG GK+N+++A++++   +G    R +  +
Sbjct: 3   LKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQMS 62

Query: 63  DVTRIGSPSFFSTFARVEGMEGL--ADISIKLETRDDRSVRCL--------QINDVVIRV 112
           DV   G+ +  +   R E    +  +D ++ +E  +    R +         IN   +R+
Sbjct: 63  DVIFAGTKT-KAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVRL 121

Query: 113 VD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR--RRMIDF 162
           +D         + + + +      +DRI S   +ERR F++     +  R R  R +   
Sbjct: 122 LDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHRQRKDRALKKL 181

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR------VEMINALSSLIMEYV 216
           E L    +R+           + +  ++  LG +   AR       E+ +A + LI + V
Sbjct: 182 ENLAVNLSRV-------QDLTNEVAKRLGPLGKQAEAARKAARVQAELADATARLIADAV 234

Query: 217 QK 218
            +
Sbjct: 235 AQ 236


>gi|27817689|emb|CAD61116.1| hypothetical protein [Cupriavidus oxalaticus]
          Length = 712

 Score = 38.5 bits (88), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + I  L +  +RN+A+ +L+F       +G+NG GKTN+  AI  L      R A   D 
Sbjct: 1  MHISKLGLVNYRNFANTKLLFQKGINTIIGENGSGKTNLFRAIRLLLDDNMIRSAYRLDS 60

Query: 65 T 65
          T
Sbjct: 61 T 61


>gi|282889710|ref|ZP_06298249.1| hypothetical protein pah_c004o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500284|gb|EFB42564.1| hypothetical protein pah_c004o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 107

 Score = 38.5 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
           TLIGPH+ DL +   DK       S G+Q+  +  + LA    +   T   P++L+D+  
Sbjct: 4   TLIGPHKDDLNLCLDDKEARY-FASEGQQRSFVAALKLAEWSSLKAVTEENPLMLIDDAG 62

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGT 350
              D  ++  L + +  +  Q+F+T T
Sbjct: 63  MSWDAFRKAKLLKYIEGL-HQVFLTTT 88


>gi|331265720|ref|YP_004325350.1| ATPase involved in DNA repair, putative [Streptococcus oralis
          Uo5]
 gi|326682392|emb|CBZ00009.1| ATPase involved in DNA repair, putative [Streptococcus oralis
          Uo5]
          Length = 880

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 4  RIKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +I+ KF  I  F+N    R++ F    T+FVG NG GKT I +A+     GR  RR   +
Sbjct: 2  KIQKKF--IKNFKNIKGTRIIDFQENVTLFVGPNGFGKTTIFDALELSLTGR-IRRIEES 58

Query: 63 DVTRIGSPSFFSTF 76
          D +  G  SF + +
Sbjct: 59 DYSD-GRSSFSTPY 71


>gi|308460454|ref|XP_003092531.1| CRE-HIM-1 protein [Caenorhabditis remanei]
 gi|308253107|gb|EFO97059.1| CRE-HIM-1 protein [Caenorhabditis remanei]
          Length = 1203

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 10 LNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYADVT 65
          L I  F++Y    L+   ++ T  +G NG GK+N+++AISF+    PG   R   Y D+ 
Sbjct: 19 LEIENFKSYKGFHLIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPG-SLRVKKYTDLI 77

Query: 66 RIGSP 70
            G+P
Sbjct: 78 H-GAP 81


>gi|288960413|ref|YP_003450753.1| ABC transporter ATP-binding protein [Azospirillum sp. B510]
 gi|288912721|dbj|BAI74209.1| ABC transporter ATP-binding protein [Azospirillum sp. B510]
          Length = 251

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 17/156 (10%)

Query: 16  RNYASLRLVFDAQHTIF-------VGDNGVGKTNILEAIS-FLSPGRGFRRASYADVT-- 65
           +++ +L +  D   T+        +G NG GKT ++  IS  L P RG    +  DVT  
Sbjct: 13  KSFGALAVTSDVSLTVLPGEIHAIIGPNGAGKTTLIHQISGTLRPSRGTIHFAGRDVTAL 72

Query: 66  ------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
                 R+G    F   + V G   L ++++ ++ R   S R L+       + +E    
Sbjct: 73  PFERRARLGLARSFQITSIVPGFTALENVALAVQARSGSSFRFLRPVAGEAALNEEARAA 132

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLD-RMVFAIDPR 154
           L I  L    +R  + LS   +R L+  +  A++PR
Sbjct: 133 LDIVGLGRVAERGAAALSHGEKRQLELAIAIAMNPR 168


>gi|322418046|ref|YP_004197269.1| SMC domain-containing protein [Geobacter sp. M18]
 gi|320124433|gb|ADW11993.1| SMC domain protein [Geobacter sp. M18]
          Length = 637

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +KI+ + I  FR YA   + FD  +T  VG NG GK+ IL A++
Sbjct: 1  MKIESVRIKNFRGYADETIFFD-NYTCLVGPNGAGKSTILSALN 43


>gi|53720442|ref|YP_109428.1| putative RecN DNA repair protein [Burkholderia pseudomallei K96243]
 gi|167817270|ref|ZP_02448950.1| putative RecN DNA repair protein [Burkholderia pseudomallei 91]
 gi|52210856|emb|CAH36844.1| putative RecN DNA repair protein [Burkholderia pseudomallei K96243]
          Length = 549

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++     R     + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114
            GS              G ADIS +  T  DR  R L       +D V+  RVVD
Sbjct: 57  TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96


>gi|254180752|ref|ZP_04887350.1| DNA repair protein RecN [Burkholderia pseudomallei 1655]
 gi|184211291|gb|EDU08334.1| DNA repair protein RecN [Burkholderia pseudomallei 1655]
          Length = 549

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++     R     + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114
            GS              G ADIS +  T  DR  R L       +D V+  RVVD
Sbjct: 57  TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96


>gi|53726219|ref|YP_103892.1| DNA repair protein RecN [Burkholderia mallei ATCC 23344]
 gi|67642158|ref|ZP_00440919.1| DNA repair protein RecN [Burkholderia mallei GB8 horse 4]
 gi|121600457|ref|YP_991841.1| DNA repair protein RecN [Burkholderia mallei SAVP1]
 gi|124383475|ref|YP_001027092.1| DNA repair protein RecN [Burkholderia mallei NCTC 10229]
 gi|126439090|ref|YP_001060297.1| DNA repair protein RecN [Burkholderia pseudomallei 668]
 gi|126449391|ref|YP_001081743.1| DNA repair protein RecN [Burkholderia mallei NCTC 10247]
 gi|126455415|ref|YP_001067556.1| DNA repair protein RecN [Burkholderia pseudomallei 1106a]
 gi|134280596|ref|ZP_01767307.1| DNA repair protein RecN [Burkholderia pseudomallei 305]
 gi|167721081|ref|ZP_02404317.1| DNA repair protein RecN [Burkholderia pseudomallei DM98]
 gi|167847168|ref|ZP_02472676.1| DNA repair protein RecN [Burkholderia pseudomallei B7210]
 gi|167895751|ref|ZP_02483153.1| DNA repair protein RecN [Burkholderia pseudomallei 7894]
 gi|167904142|ref|ZP_02491347.1| DNA repair protein RecN [Burkholderia pseudomallei NCTC 13177]
 gi|167920355|ref|ZP_02507446.1| DNA repair protein RecN [Burkholderia pseudomallei BCC215]
 gi|217421075|ref|ZP_03452580.1| DNA repair protein RecN [Burkholderia pseudomallei 576]
 gi|242314472|ref|ZP_04813488.1| DNA repair protein RecN [Burkholderia pseudomallei 1106b]
 gi|254178750|ref|ZP_04885404.1| DNA repair protein RecN [Burkholderia mallei ATCC 10399]
 gi|254202603|ref|ZP_04908966.1| DNA repair protein RecN [Burkholderia mallei FMH]
 gi|254207941|ref|ZP_04914291.1| DNA repair protein RecN [Burkholderia mallei JHU]
 gi|254355919|ref|ZP_04972197.1| DNA repair protein RecN [Burkholderia mallei 2002721280]
 gi|52429642|gb|AAU50235.1| DNA repair protein RecN [Burkholderia mallei ATCC 23344]
 gi|121229267|gb|ABM51785.1| DNA repair protein RecN [Burkholderia mallei SAVP1]
 gi|124291495|gb|ABN00764.1| DNA repair protein RecN [Burkholderia mallei NCTC 10229]
 gi|126218583|gb|ABN82089.1| DNA repair protein RecN [Burkholderia pseudomallei 668]
 gi|126229057|gb|ABN92597.1| DNA repair protein RecN [Burkholderia pseudomallei 1106a]
 gi|126242261|gb|ABO05354.1| DNA repair protein RecN [Burkholderia mallei NCTC 10247]
 gi|134248603|gb|EBA48686.1| DNA repair protein RecN [Burkholderia pseudomallei 305]
 gi|147746850|gb|EDK53927.1| DNA repair protein RecN [Burkholderia mallei FMH]
 gi|147751835|gb|EDK58902.1| DNA repair protein RecN [Burkholderia mallei JHU]
 gi|148024894|gb|EDK83072.1| DNA repair protein RecN [Burkholderia mallei 2002721280]
 gi|160694664|gb|EDP84672.1| DNA repair protein RecN [Burkholderia mallei ATCC 10399]
 gi|217396487|gb|EEC36504.1| DNA repair protein RecN [Burkholderia pseudomallei 576]
 gi|238523252|gb|EEP86692.1| DNA repair protein RecN [Burkholderia mallei GB8 horse 4]
 gi|242137711|gb|EES24113.1| DNA repair protein RecN [Burkholderia pseudomallei 1106b]
          Length = 549

 Score = 38.5 bits (88), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++     R     + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114
            GS              G ADIS +  T  DR  R L       +D V+  RVVD
Sbjct: 57  TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96


>gi|312904547|ref|ZP_07763705.1| DNA repair protein RecN [Enterococcus faecalis TX0635]
 gi|310632060|gb|EFQ15343.1| DNA repair protein RecN [Enterococcus faecalis TX0635]
 gi|315577399|gb|EFU89590.1| DNA repair protein RecN [Enterococcus faecalis TX0630]
          Length = 557

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|307289413|ref|ZP_07569367.1| DNA repair protein RecN [Enterococcus faecalis TX0109]
 gi|306499668|gb|EFM69031.1| DNA repair protein RecN [Enterococcus faecalis TX0109]
 gi|315165150|gb|EFU09167.1| DNA repair protein RecN [Enterococcus faecalis TX1302]
          Length = 557

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|167580679|ref|ZP_02373553.1| DNA repair protein RecN [Burkholderia thailandensis TXDOH]
          Length = 549

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++     R     + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114
            GS              G ADIS +  T  DR  R L       +D V+  RVVD
Sbjct: 57  TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96


>gi|157737948|ref|YP_001490632.1| hypothetical protein Abu_1715 [Arcobacter butzleri RM4018]
 gi|157699802|gb|ABV67962.1| hypothetical protein Abu_1715 [Arcobacter butzleri RM4018]
          Length = 590

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 2/46 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAIS 48
          +K+K L ++ F+N     + F++    T+ +G+NG GK+NILEAIS
Sbjct: 1  MKLKRLWVNGFKNLKDFEINFESNEGITLLIGNNGSGKSNILEAIS 46


>gi|29375566|ref|NP_814720.1| DNA repair protein RecN [Enterococcus faecalis V583]
 gi|227555094|ref|ZP_03985141.1| DNA repair protein RecN [Enterococcus faecalis HH22]
 gi|307275468|ref|ZP_07556610.1| DNA repair protein RecN [Enterococcus faecalis TX2134]
 gi|29343027|gb|AAO80790.1| DNA repair protein RecN [Enterococcus faecalis V583]
 gi|227175762|gb|EEI56734.1| DNA repair protein RecN [Enterococcus faecalis HH22]
 gi|306507856|gb|EFM76984.1| DNA repair protein RecN [Enterococcus faecalis TX2134]
 gi|315168049|gb|EFU12066.1| DNA repair protein RecN [Enterococcus faecalis TX1341]
 gi|315574271|gb|EFU86462.1| DNA repair protein RecN [Enterococcus faecalis TX0309B]
 gi|315581574|gb|EFU93765.1| DNA repair protein RecN [Enterococcus faecalis TX0309A]
          Length = 557

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|315026961|gb|EFT38893.1| DNA repair protein RecN [Enterococcus faecalis TX2137]
          Length = 557

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|303230837|ref|ZP_07317584.1| conserved hypothetical protein [Veillonella atypica
          ACS-049-V-Sch6]
 gi|302514597|gb|EFL56592.1| conserved hypothetical protein [Veillonella atypica
          ACS-049-V-Sch6]
          Length = 538

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 7/80 (8%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
          KIK LN   +++ A   +  +    IFVG+N  GK++ILEA+S +  G    R + + + 
Sbjct: 5  KIKILN---YKSIADTIINLNKDMNIFVGENDAGKSSILEALSAVLMG----RINGSGIV 57

Query: 66 RIGSPSFFSTFARVEGMEGL 85
          +   PS F++ AR   +E +
Sbjct: 58 QNLRPSLFNSNARKNYLESI 77


>gi|257086343|ref|ZP_05580704.1| DNA repair protein RecN [Enterococcus faecalis D6]
 gi|256994373|gb|EEU81675.1| DNA repair protein RecN [Enterococcus faecalis D6]
          Length = 560

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 5  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53


>gi|256617907|ref|ZP_05474753.1| DNA repair protein RecN [Enterococcus faecalis ATCC 4200]
 gi|256597434|gb|EEU16610.1| DNA repair protein RecN [Enterococcus faecalis ATCC 4200]
          Length = 560

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 5  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53


>gi|307268065|ref|ZP_07549453.1| DNA repair protein RecN [Enterococcus faecalis TX4248]
 gi|312900455|ref|ZP_07759762.1| DNA repair protein RecN [Enterococcus faecalis TX0470]
 gi|306515706|gb|EFM84233.1| DNA repair protein RecN [Enterococcus faecalis TX4248]
 gi|311292431|gb|EFQ70987.1| DNA repair protein RecN [Enterococcus faecalis TX0470]
 gi|315031729|gb|EFT43661.1| DNA repair protein RecN [Enterococcus faecalis TX0017]
 gi|315034214|gb|EFT46146.1| DNA repair protein RecN [Enterococcus faecalis TX0027]
 gi|315147936|gb|EFT91952.1| DNA repair protein RecN [Enterococcus faecalis TX4244]
 gi|323480224|gb|ADX79663.1| DNA repair protein RecN [Enterococcus faecalis 62]
 gi|329574363|gb|EGG55935.1| DNA repair protein RecN [Enterococcus faecalis TX1467]
          Length = 557

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|255971438|ref|ZP_05422024.1| DNA repair protein RecN [Enterococcus faecalis T1]
 gi|256960166|ref|ZP_05564337.1| DNA repair protein RecN [Enterococcus faecalis Merz96]
 gi|256962591|ref|ZP_05566762.1| DNA repair protein RecN [Enterococcus faecalis HIP11704]
 gi|257083895|ref|ZP_05578256.1| DNA repair protein RecN [Enterococcus faecalis Fly1]
 gi|257421233|ref|ZP_05598223.1| DNA repair protein recN [Enterococcus faecalis X98]
 gi|255962456|gb|EET94932.1| DNA repair protein RecN [Enterococcus faecalis T1]
 gi|256950662|gb|EEU67294.1| DNA repair protein RecN [Enterococcus faecalis Merz96]
 gi|256953087|gb|EEU69719.1| DNA repair protein RecN [Enterococcus faecalis HIP11704]
 gi|256991925|gb|EEU79227.1| DNA repair protein RecN [Enterococcus faecalis Fly1]
 gi|257163057|gb|EEU93017.1| DNA repair protein recN [Enterococcus faecalis X98]
          Length = 560

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 5  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53


>gi|227517907|ref|ZP_03947956.1| DNA repair protein RecN [Enterococcus faecalis TX0104]
 gi|227074661|gb|EEI12624.1| DNA repair protein RecN [Enterococcus faecalis TX0104]
          Length = 557

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|226226181|ref|YP_002760287.1| exonuclease [Gemmatimonas aurantiaca T-27]
 gi|226089372|dbj|BAH37817.1| exonuclease [Gemmatimonas aurantiaca T-27]
          Length = 800

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 8/68 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRG----F 56
          +++  L++  FR +A  R+ F    T  +G NG GK+ ILEAI++     S  RG     
Sbjct: 1  MRLHSLHLVNFRQHADTRIDFALGLTGIIGPNGSGKSTILEAIAWSLYGNSAARGNKDSI 60

Query: 57 RRASYADV 64
          RR S  DV
Sbjct: 61 RRLSVEDV 68


>gi|295113837|emb|CBL32474.1| DNA replication and repair protein RecN [Enterococcus sp. 7L76]
          Length = 557

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|294780574|ref|ZP_06745937.1| DNA repair protein RecN [Enterococcus faecalis PC1.1]
 gi|294452401|gb|EFG20840.1| DNA repair protein RecN [Enterococcus faecalis PC1.1]
          Length = 557

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|257415602|ref|ZP_05592596.1| DNA repair protein RecN [Enterococcus faecalis AR01/DG]
 gi|257157430|gb|EEU87390.1| DNA repair protein RecN [Enterococcus faecalis ARO1/DG]
          Length = 560

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 5  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53


>gi|256852637|ref|ZP_05558008.1| DNA repair protein RecN [Enterococcus faecalis T8]
 gi|256711982|gb|EEU27019.1| DNA repair protein RecN [Enterococcus faecalis T8]
          Length = 560

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 5  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53


>gi|114775605|ref|ZP_01451173.1| hypothetical protein SPV1_04733 [Mariprofundus ferrooxydans PV-1]
 gi|114553716|gb|EAU56097.1| hypothetical protein SPV1_04733 [Mariprofundus ferrooxydans PV-1]
          Length = 637

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA 59
          ++++ L I  FR   S ++ F   HT+ VG N +GK+ + EA+   L P R FRR 
Sbjct: 1  MRVRRLTIENFRGVRSGQVDFRG-HTLLVGGNNIGKSTVCEALDLVLGPERLFRRP 55


>gi|327534571|gb|AEA93405.1| DNA repair protein RecN [Enterococcus faecalis OG1RF]
          Length = 557

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|315157620|gb|EFU01637.1| DNA repair protein RecN [Enterococcus faecalis TX0312]
          Length = 557

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|315149508|gb|EFT93524.1| DNA repair protein RecN [Enterococcus faecalis TX0012]
          Length = 557

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|307278964|ref|ZP_07560023.1| DNA repair protein RecN [Enterococcus faecalis TX0860]
 gi|306504351|gb|EFM73562.1| DNA repair protein RecN [Enterococcus faecalis TX0860]
          Length = 557

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|256957076|ref|ZP_05561247.1| DNA repair protein RecN [Enterococcus faecalis DS5]
 gi|257077872|ref|ZP_05572233.1| DNA repair protein RecN [Enterococcus faecalis JH1]
 gi|256947572|gb|EEU64204.1| DNA repair protein RecN [Enterococcus faecalis DS5]
 gi|256985902|gb|EEU73204.1| DNA repair protein RecN [Enterococcus faecalis JH1]
          Length = 560

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 5  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53


>gi|255974053|ref|ZP_05424639.1| DNA repair protein RecN [Enterococcus faecalis T2]
 gi|255966925|gb|EET97547.1| DNA repair protein RecN [Enterococcus faecalis T2]
          Length = 560

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 5  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53


>gi|76808604|ref|YP_334700.1| DNA repair protein RecN [Burkholderia pseudomallei 1710b]
 gi|167825680|ref|ZP_02457151.1| DNA repair protein RecN [Burkholderia pseudomallei 9]
 gi|167912401|ref|ZP_02499492.1| DNA repair protein RecN [Burkholderia pseudomallei 112]
 gi|226194310|ref|ZP_03789909.1| DNA repair protein RecN [Burkholderia pseudomallei Pakistan 9]
 gi|254191587|ref|ZP_04898090.1| DNA repair protein RecN [Burkholderia pseudomallei Pasteur 52237]
 gi|254260346|ref|ZP_04951400.1| DNA repair protein RecN [Burkholderia pseudomallei 1710a]
 gi|76578057|gb|ABA47532.1| DNA repair protein RecN [Burkholderia pseudomallei 1710b]
 gi|157939258|gb|EDO94928.1| DNA repair protein RecN [Burkholderia pseudomallei Pasteur 52237]
 gi|225933775|gb|EEH29763.1| DNA repair protein RecN [Burkholderia pseudomallei Pakistan 9]
 gi|254219035|gb|EET08419.1| DNA repair protein RecN [Burkholderia pseudomallei 1710a]
          Length = 549

 Score = 38.1 bits (87), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++     R     + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114
            GS              G ADIS +  T  DR  R L       +D V+  RVVD
Sbjct: 57  TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96


>gi|257418575|ref|ZP_05595569.1| DNA repair protein recN [Enterococcus faecalis T11]
 gi|257160403|gb|EEU90363.1| DNA repair protein recN [Enterococcus faecalis T11]
          Length = 560

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 5  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53


>gi|229546831|ref|ZP_04435556.1| DNA repair protein RecN [Enterococcus faecalis TX1322]
 gi|307290053|ref|ZP_07569977.1| DNA repair protein RecN [Enterococcus faecalis TX0411]
 gi|229307996|gb|EEN73983.1| DNA repair protein RecN [Enterococcus faecalis TX1322]
 gi|306498895|gb|EFM68389.1| DNA repair protein RecN [Enterococcus faecalis TX0411]
 gi|315029674|gb|EFT41606.1| DNA repair protein RecN [Enterococcus faecalis TX4000]
          Length = 557

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|229548925|ref|ZP_04437650.1| DNA repair protein RecN [Enterococcus faecalis ATCC 29200]
 gi|293382534|ref|ZP_06628468.1| DNA repair protein RecN [Enterococcus faecalis R712]
 gi|293387866|ref|ZP_06632405.1| DNA repair protein RecN [Enterococcus faecalis S613]
 gi|312906863|ref|ZP_07765860.1| DNA repair protein RecN [Enterococcus faecalis DAPTO 512]
 gi|312952743|ref|ZP_07771605.1| DNA repair protein RecN [Enterococcus faecalis TX0102]
 gi|312978882|ref|ZP_07790608.1| DNA repair protein RecN [Enterococcus faecalis DAPTO 516]
 gi|229305946|gb|EEN71942.1| DNA repair protein RecN [Enterococcus faecalis ATCC 29200]
 gi|291080082|gb|EFE17446.1| DNA repair protein RecN [Enterococcus faecalis R712]
 gi|291082713|gb|EFE19676.1| DNA repair protein RecN [Enterococcus faecalis S613]
 gi|310627117|gb|EFQ10400.1| DNA repair protein RecN [Enterococcus faecalis DAPTO 512]
 gi|310629259|gb|EFQ12542.1| DNA repair protein RecN [Enterococcus faecalis TX0102]
 gi|311288319|gb|EFQ66875.1| DNA repair protein RecN [Enterococcus faecalis DAPTO 516]
 gi|315153061|gb|EFT97077.1| DNA repair protein RecN [Enterococcus faecalis TX0031]
 gi|315156834|gb|EFU00851.1| DNA repair protein RecN [Enterococcus faecalis TX0043]
 gi|315171922|gb|EFU15939.1| DNA repair protein RecN [Enterococcus faecalis TX1342]
 gi|315173301|gb|EFU17318.1| DNA repair protein RecN [Enterococcus faecalis TX1346]
          Length = 557

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|300859955|ref|ZP_07106043.1| DNA repair protein RecN [Enterococcus faecalis TUSoD Ef11]
 gi|300850773|gb|EFK78522.1| DNA repair protein RecN [Enterococcus faecalis TUSoD Ef11]
 gi|315144370|gb|EFT88386.1| DNA repair protein RecN [Enterococcus faecalis TX2141]
 gi|315162950|gb|EFU06967.1| DNA repair protein RecN [Enterococcus faecalis TX0645]
          Length = 557

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|257089393|ref|ZP_05583754.1| DNA repair protein recN [Enterococcus faecalis CH188]
 gi|256998205|gb|EEU84725.1| DNA repair protein recN [Enterococcus faecalis CH188]
          Length = 560

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 5  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53


>gi|256761742|ref|ZP_05502322.1| DNA repair protein RecN [Enterococcus faecalis T3]
 gi|256682993|gb|EEU22688.1| DNA repair protein RecN [Enterococcus faecalis T3]
          Length = 560

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 5  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53


>gi|288560428|ref|YP_003423914.1| hypothetical protein mru_1172 [Methanobrevibacter ruminantium M1]
 gi|288543138|gb|ADC47022.1| hypothetical protein mru_1172 [Methanobrevibacter ruminantium M1]
          Length = 117

 Score = 38.1 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          M  +  IK L I  FR    L+  F+ +  +  G NG GK++I +A  +L  G+
Sbjct: 1  MGQKFNIKELEIRSFRGIKDLKYDFEGKSLVLCGPNGCGKSSITQAFEYLFTGQ 54


>gi|257081237|ref|ZP_05575598.1| DNA repair protein RecN [Enterococcus faecalis E1Sol]
 gi|256989267|gb|EEU76569.1| DNA repair protein RecN [Enterococcus faecalis E1Sol]
          Length = 560

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 5  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 53


>gi|83720672|ref|YP_441847.1| DNA repair protein RecN [Burkholderia thailandensis E264]
 gi|167618784|ref|ZP_02387415.1| DNA repair protein RecN [Burkholderia thailandensis Bt4]
 gi|257138016|ref|ZP_05586278.1| DNA repair protein RecN [Burkholderia thailandensis E264]
 gi|83654497|gb|ABC38560.1| DNA repair protein RecN [Burkholderia thailandensis E264]
          Length = 549

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++     R     + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114
            GS              G ADIS +  T  DR  R L       +D V+  RVVD
Sbjct: 57  TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96


>gi|49481863|gb|AAT66643.1| DNA repair and genetic recombination protein [Geobacillus
           stearothermophilus]
          Length = 573

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 19/105 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  G G      ++  R G+
Sbjct: 5   LSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGXG-----SSEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                  A +EG+  L D        DDR   C +  D+ + V D
Sbjct: 60  EK-----AEIEGL-FLLD--------DDRHPCCQKCADIGVDVSD 90


>gi|169783320|ref|XP_001826122.1| structural maintenance of chromosomes protein 4 [Aspergillus oryzae
           RIB40]
 gi|83774866|dbj|BAE64989.1| unnamed protein product [Aspergillus oryzae]
          Length = 1433

 Score = 38.1 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 5/57 (8%)

Query: 3   NRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           +R+ IK L ++ F++YA  ++V  F A  +  VG NG GK+N+++A+ F+    GFR
Sbjct: 227 SRMVIKTLILNNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDALLFVF---GFR 280


>gi|310817573|ref|YP_003949931.1| DNA replication and repair protein [Stigmatella aurantiaca
          DW4/3-1]
 gi|309390645|gb|ADO68104.1| DNA replication and repair protein [Stigmatella aurantiaca
          DW4/3-1]
          Length = 152

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA---ISFLSPGRGFRRASYA 62
          L +  F++Y S RL   A+ T+ +G N  GK+N+LEA   +S+L+ GR      YA
Sbjct: 5  LGVDNFKSYRSARLPL-AELTVLIGANASGKSNLLEALQMLSWLARGRRLSEILYA 59


>gi|305663212|ref|YP_003859500.1| SMC domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377781|gb|ADM27620.1| SMC domain protein [Ignisphaera aggregans DSM 17230]
          Length = 492

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +R+ ++ + I  F++   L L       + VG N  GKTNILEA+ FL
Sbjct: 12 DRVFVRRIYIENFKSIKHLELELSPGVNVLVGPNASGKTNILEALDFL 59


>gi|300784656|ref|YP_003764947.1| ATPase [Amycolatopsis mediterranei U32]
 gi|299794170|gb|ADJ44545.1| ATPase [Amycolatopsis mediterranei U32]
          Length = 390

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFR- 57
           MT    I+ L I  FR    + L      T  +G NG GK+ + +A+ FLS     G R 
Sbjct: 1   MTLTTGIERLRIRNFRVLRDVELAGLTPVTALLGPNGSGKSTVFDALDFLSESLRAGLRS 60

Query: 58  ----RASYADVTRIGS--PSFFSTFARVEGMEGLADISIKLETRDDRSV 100
               R   AD+   GS  P       R+EG   +A+  + +E  DD  V
Sbjct: 61  AWNQRGGAADIVTHGSTGPVEIEVTCRIEGA--VAEYRLAIEHDDDEPV 107


>gi|160899596|ref|YP_001565178.1| ATP-dependent endonuclease family protein [Delftia acidovorans
          SPH-1]
 gi|163858601|ref|YP_001632899.1| hypothetical protein Bpet4283 [Bordetella petrii DSM 12804]
 gi|160365180|gb|ABX36793.1| ATP-dependent endonuclease family protein [Delftia acidovorans
          SPH-1]
 gi|163262329|emb|CAP44632.1| conserved hypothetical protein [Bordetella petrii]
          Length = 600

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRR 58
          ++I  + + +FR   S  +V  + H++F+GDN VGK+ +LEAI   L P R  RR
Sbjct: 1  MQIAKVKVEKFRGIES-GIVTLSGHSVFLGDNNVGKSTLLEAIDLVLGPERLSRR 54


>gi|290889933|ref|ZP_06553020.1| hypothetical protein AWRIB429_0410 [Oenococcus oeni AWRIB429]
 gi|290480543|gb|EFD89180.1| hypothetical protein AWRIB429_0410 [Oenococcus oeni AWRIB429]
          Length = 1184

 Score = 38.1 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +K+K L I+ F+++A   ++ F    T  VG NG GK+NI+EAI ++      +G R  +
Sbjct: 1  MKLKSLEINGFKSFADKTVIDFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKGLRGNT 60

Query: 61 YADVTRIGS 69
           ADV   GS
Sbjct: 61 MADVIFGGS 69


>gi|188582301|ref|YP_001925746.1| ATP-dependent endonuclease [Methylobacterium populi BJ001]
 gi|179345799|gb|ACB81211.1| ATP-dependent endonuclease family protein [Methylobacterium
          populi BJ001]
          Length = 598

 Score = 38.1 bits (87), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRAS 60
          +KI  + I  FR   S +LV    H + +GDN  GK+++ EAI   L P R  RR  
Sbjct: 1  MKIFSVVIENFRGIQSAKLVL-PDHAVLIGDNNTGKSSVFEAIDLALGPDRLSRRPP 56


>gi|118587505|ref|ZP_01544929.1| chromosome segregation SMC protein [Oenococcus oeni ATCC
          BAA-1163]
 gi|118431956|gb|EAV38698.1| chromosome segregation SMC protein [Oenococcus oeni ATCC
          BAA-1163]
          Length = 1184

 Score = 38.1 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +K+K L I+ F+++A   ++ F    T  VG NG GK+NI+EAI ++      +G R  +
Sbjct: 1  MKLKSLEINGFKSFADKTVIDFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKGLRGNT 60

Query: 61 YADVTRIGS 69
           ADV   GS
Sbjct: 61 MADVIFGGS 69


>gi|116490532|ref|YP_810076.1| condensin subunit Smc [Oenococcus oeni PSU-1]
 gi|116091257|gb|ABJ56411.1| condensin subunit Smc [Oenococcus oeni PSU-1]
          Length = 1184

 Score = 38.1 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +K+K L I+ F+++A   ++ F    T  VG NG GK+NI+EAI ++      +G R  +
Sbjct: 1  MKLKSLEINGFKSFADKTVIDFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKGLRGNT 60

Query: 61 YADVTRIGS 69
           ADV   GS
Sbjct: 61 MADVIFGGS 69


>gi|284105821|ref|ZP_06386225.1| chromosome segregation protein SMC [Candidatus Poribacteria sp.
          WGA-A3]
 gi|283830108|gb|EFC34374.1| chromosome segregation protein SMC [Candidatus Poribacteria sp.
          WGA-A3]
          Length = 1216

 Score = 38.1 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 29/43 (67%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K+K L +S F+++   RL F    T  VG NGVGK+N+++AI
Sbjct: 1  MKLKSLLVSGFKSFPEARLDFPQGITAVVGPNGVGKSNVVDAI 43


>gi|222480011|ref|YP_002566248.1| AAA ATPase [Halorubrum lacusprofundi ATCC 49239]
 gi|222452913|gb|ACM57178.1| AAA ATPase [Halorubrum lacusprofundi ATCC 49239]
          Length = 577

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 13/102 (12%)

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI--SNTTGFAPILLLDEISA 324
           GP + D   D  D  IT  +          +   +A+ R +  S+TT ++ I+  DE  +
Sbjct: 476 GPRKYDRAGDLSDAEITFMN----------ISFAVAYNRFVRESDTTEWSTIVC-DEPFS 524

Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +LD + R  L   +     QI  T +DKS+ D   +T +  R
Sbjct: 525 NLDAEGRVNLLEFIESCDEQIICTSSDKSLLDEFPKTGQLTR 566


>gi|295399111|ref|ZP_06809093.1| DNA repair protein RecN [Geobacillus thermoglucosidasius
          C56-YS93]
 gi|312110286|ref|YP_003988602.1| DNA repair protein RecN [Geobacillus sp. Y4.1MC1]
 gi|294978577|gb|EFG54173.1| DNA repair protein RecN [Geobacillus thermoglucosidasius
          C56-YS93]
 gi|311215387|gb|ADP73991.1| DNA repair protein RecN [Geobacillus sp. Y4.1MC1]
          Length = 573

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G 
Sbjct: 5  LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|49481967|gb|AAT66695.1| DNA repair and genetic recombination protein [Bacillus
          thermantarcticus]
          Length = 573

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G 
Sbjct: 5  LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|284054275|ref|ZP_06384485.1| ATPase [Arthrospira platensis str. Paraca]
 gi|291568930|dbj|BAI91202.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 395

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          M+   KI++L +  +R   +L L      T+F+G NG GK+ I +  +FLS
Sbjct: 1  MSTIPKIEYLKVRNYRALQNLELKKITPLTVFLGPNGSGKSTIFDVFAFLS 51


>gi|116330711|ref|YP_800429.1| chromosome segregation ATPase [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
 gi|116124400|gb|ABJ75671.1| Chromosome segregation ATPase [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
          Length = 924

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
          +K LNI  F+ +A    ++ D   T  VG NG GK+NI++A+ ++      +G R     
Sbjct: 3  LKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGEKMD 62

Query: 63 DVTRIGSPS 71
          DV   GS +
Sbjct: 63 DVIFHGSEA 71


>gi|237654254|ref|YP_002890568.1| ATPase AAA [Thauera sp. MZ1T]
 gi|237625501|gb|ACR02191.1| AAA ATPase [Thauera sp. MZ1T]
          Length = 530

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAIS 48
          +++  ++I  F+N   L L FD +   T+ +G NG GK+N++EAI+
Sbjct: 1  MRLDKVSIDGFKNLRGLELDFDERQLTTVLIGQNGAGKSNLIEAIT 46


>gi|49481987|gb|AAT66705.1| DNA repair and genetic recombination protein [Geobacillus
          thermoglucosidasius]
          Length = 573

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G 
Sbjct: 5  LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|254501687|ref|ZP_05113838.1| TOBE domain family [Labrenzia alexandrii DFL-11]
 gi|222437758|gb|EEE44437.1| TOBE domain family [Labrenzia alexandrii DFL-11]
          Length = 360

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 17/228 (7%)

Query: 24  VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADVTRIG-----SPSFFSTFA 77
           V    +T+F+G +G GKT +L  I  FL+P  G       D+T +      + + F  +A
Sbjct: 28  VPTGTYTVFLGPSGSGKTTLLSVIGGFLTPDTGQVLIKGQDMTSVAPARRPTTTVFQDYA 87

Query: 78  RVEGMEGLADISIKLETRD----DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133
               M  LA+++  L  R     +R+ R   + D+V     E  K   +S        + 
Sbjct: 88  LFPHMSILANVAFGLRMRGVDGAERNRRAAAMLDLVGLSHQERKKPHELSGGQRQRVALA 147

Query: 134 SGLSMERR-RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
             L++E     LD  + A+D + R +M   +  ++G  R +   +   +        + +
Sbjct: 148 RALAVEPTVLLLDEPLGALDLKLRHQM---QAELKGIQREVKTSFIHVTHDQEEAMAIGD 204

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQS 239
             V +N  R+E + +   + +E   K  F    +  + FLDG+  DQS
Sbjct: 205 TVVVMNTGRIEDLGSPERVYLE--PKTLFAAGFMGQSSFLDGRVADQS 250


>gi|49481977|gb|AAT66700.1| DNA repair and genetic recombination protein [Geobacillus
          thermoglucosidasius]
          Length = 573

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G 
Sbjct: 5  LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|49481989|gb|AAT66706.1| DNA repair and genetic recombination protein [Geobacillus
          thermoglucosidasius]
          Length = 573

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G 
Sbjct: 5  LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|300856330|ref|YP_003781314.1| phage-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300436445|gb|ADK16212.1| phage-related protein [Clostridium ljungdahlii DSM 13528]
          Length = 661

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M+NRI +K L +  F+    L + F+    I+ GDNG GKT + +A ++L   +  +  S
Sbjct: 1  MSNRIVLKGLYLKNFKGIKELDIDFENTTNIY-GDNGTGKTTVFDAFAWLLFDKDSQNIS 59

Query: 61 YADV 64
            DV
Sbjct: 60 KFDV 63


>gi|218263846|ref|ZP_03477815.1| hypothetical protein PRABACTJOHN_03505 [Parabacteroides johnsonii
          DSM 18315]
 gi|218222445|gb|EEC95095.1| hypothetical protein PRABACTJOHN_03505 [Parabacteroides johnsonii
          DSM 18315]
          Length = 239

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA-ISFLS-----PGRGFRR 58
          ++I  ++I  FR   + R+ F+   TIFVG N  GKT+ + A I FL        R F  
Sbjct: 1  MRIDHIHIRNFRKLKNCRIDFNKDQTIFVGANNSGKTSAMSAIIWFLKDQNRFTTREFTL 60

Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGL 85
           ++ D+  + + S+ +    +E  E L
Sbjct: 61 TNWRDINELAN-SWLAVNDEMENREEL 86


>gi|163790193|ref|ZP_02184626.1| DNA repair protein RecN [Carnobacterium sp. AT7]
 gi|159874468|gb|EDP68539.1| DNA repair protein RecN [Carnobacterium sp. AT7]
          Length = 572

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L I +F    +L L F+   T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELTIKDFAIIQNLNLSFNQGMTVLTGETGAGKSIIIDAVGLLAGGRG 50


>gi|116328632|ref|YP_798352.1| chromosome segregation ATPase [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116121376|gb|ABJ79419.1| Chromosome segregation ATPase [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
          Length = 924

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
          +K LNI  F+ +A    ++ D   T  VG NG GK+NI++A+ ++      +G R     
Sbjct: 3  LKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGEKMD 62

Query: 63 DVTRIGSPS 71
          DV   GS +
Sbjct: 63 DVIFHGSEA 71


>gi|326536438|ref|YP_004300868.1| endonuclease subunit [Aeromonas phage 65]
 gi|40795444|gb|AAR90909.1| endonuclease subunit [Aeromonas phage 65]
          Length = 775

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 6/54 (11%)

Query: 11 NISEFRNYAS-----LRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          N  E++N  S     +R+  D  + T+  G NG GK+ ++EA+SFL  G+ +R+
Sbjct: 6  NYIEYKNIMSVGSNPIRVQLDLTEKTLVTGTNGAGKSTMIEALSFLLYGKSYRK 59


>gi|49481993|gb|AAT66708.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
          W9A92]
          Length = 573

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G 
Sbjct: 5  LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|238910207|ref|ZP_04654044.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Tennessee str. CDC07-0191]
          Length = 465

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+AI
Sbjct: 1  MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTAVLDAI 43


>gi|225414557|ref|ZP_03761746.1| hypothetical protein CLOSTASPAR_05780 [Clostridium asparagiforme
          DSM 15981]
 gi|225041913|gb|EEG52159.1| hypothetical protein CLOSTASPAR_05780 [Clostridium asparagiforme
          DSM 15981]
          Length = 434

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I  L +++FR    L+L  D +  I  G NGVGK+ IL A++ L
Sbjct: 1  MRINALYLNDFRGIHELKLSLDGKSMILFGINGVGKSTILSAVNLL 46


>gi|189095435|ref|YP_001936448.1| heat shock protein 70 [Heterosigma akashiwo]
 gi|157694778|gb|ABV66054.1| Hsp70-type chaperone [Heterosigma akashiwo]
 gi|157778009|gb|ABV70195.1| Hsp70-type chaperone [Heterosigma akashiwo]
          Length = 612

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQS 239
            C   E Q+ EL  K++   ++ +N L +   E +  EN+P +K +L+G  +  GK  Q 
Sbjct: 538 LCYQSEKQVEELKEKVSTESIQSVNNLIAKTRESLIAENYPELKENLSGLTEALGKMQQE 597

Query: 240 FCALKEEYAKKLFD 253
              L+ E  K + D
Sbjct: 598 II-LETELPKPIID 610


>gi|49481969|gb|AAT66696.1| DNA repair and genetic recombination protein [Geobacillus
          thermoglucosidasius]
 gi|49481975|gb|AAT66699.1| DNA repair and genetic recombination protein [Geobacillus
          thermoglucosidasius]
 gi|49481983|gb|AAT66703.1| DNA repair and genetic recombination protein [Geobacillus
          thermoglucosidasius]
 gi|49481985|gb|AAT66704.1| DNA repair and genetic recombination protein [Geobacillus
          stearothermophilus]
          Length = 573

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G 
Sbjct: 5  LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVRYGE 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 EK-----AEIEGL 67


>gi|126695406|ref|YP_001090292.1| SMC ATPase superfamily chromosome segregation protein
          [Prochlorococcus marinus str. MIT 9301]
 gi|126542449|gb|ABO16691.1| putative chromosome segregation protein, SMC ATPase superfamily
          [Prochlorococcus marinus str. MIT 9301]
          Length = 1196

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 15/94 (15%)

Query: 10 LNISEFRNYAS----LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62
          +N  EF N+ S    +++  +   T+  G NG GK+NIL+ I F   LS  RG R     
Sbjct: 6  INQVEFENFKSFGGNVKIPLEEGFTVVTGPNGSGKSNILDGILFCLGLSNSRGMR----- 60

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
             R+  P   +     EG      +S+K   +D
Sbjct: 61 -AERL--PDLINNSKVKEGKSSETSVSVKFNIQD 91


>gi|313900030|ref|ZP_07833530.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312955082|gb|EFR36750.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 249

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 16/27 (59%), Positives = 21/27 (77%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +L FDA  T FVG+NG GK+ +LEAI+
Sbjct: 36 QLSFDAPVTFFVGENGTGKSTLLEAIA 62


>gi|87300931|ref|ZP_01083773.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. WH 5701]
 gi|87284802|gb|EAQ76754.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. WH 5701]
          Length = 342

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 114/244 (46%), Gaps = 25/244 (10%)

Query: 133 FSGLSME--------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
           FS L +E        RR++LDR+V  ++P +   +  + RL+R R++LL  G        
Sbjct: 86  FSALDLELVRGEPALRRQWLDRVVLQLEPVYGELLARYGRLLRQRSQLLRRGLSQGEQQL 145

Query: 181 -SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL----TGFLDGK 235
            S   + + Q+A +G +++  R   +  L  L   + ++ +    +L L       L+G+
Sbjct: 146 HSLLDAFDLQIALIGTRLHRRRRRALARLQPLAAAWQERLSGGREQLELRYQAGSQLEGE 205

Query: 236 FDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             ++    AL E+  ++  + R++ +      +GPHR D +     +      GS G+Q+
Sbjct: 206 EAEAPWREALLEQLRRQRPEERRLGACQ----VGPHR-DEVAMLLGEEPARRFGSAGQQR 260

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            +++ + LA   L+    G  P+LLLD++ A   + KR  L   V   G Q  ++ T  +
Sbjct: 261 TLVLALKLAELELVQQLWGEPPLLLLDDVLA-ELDPKRQELLLEVVGTGHQCLVSATHLT 319

Query: 354 VFDS 357
            F +
Sbjct: 320 SFST 323


>gi|118479365|ref|YP_896516.1| DNA repair protein [Bacillus thuringiensis str. Al Hakam]
 gi|118418590|gb|ABK87009.1| DNA replication and repair protein RecN [Bacillus thuringiensis
          str. Al Hakam]
          Length = 600

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 13/83 (15%)

Query: 3  NRIKIKFLNISEFRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          N +    L+    RN+A   SL + F    T+  G+ G GK+ I++AIS L  GRG    
Sbjct: 16 NEVNGALLSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG---- 71

Query: 60 SYADVTRIGSPSFFSTFARVEGM 82
            A+  R G+       A +EG+
Sbjct: 72 -SAEFVRYGTEK-----AEIEGL 88


>gi|257790558|ref|YP_003181164.1| SMC domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257474455|gb|ACV54775.1| SMC domain protein [Eggerthella lenta DSM 2243]
          Length = 564

 Score = 38.1 bits (87), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI  L I  +R+   L L    +  +F+G N VGK+NIL A+ +L
Sbjct: 1  MKIDKLTIKNYRSVRDLELSLSPRINVFIGANNVGKSNILSAMEYL 46


>gi|312966699|ref|ZP_07780918.1| recF/RecN/SMC N terminal domain protein [Escherichia coli 2362-75]
 gi|312288651|gb|EFR16552.1| recF/RecN/SMC N terminal domain protein [Escherichia coli 2362-75]
          Length = 550

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
           N   ++ L + +FR ++ L + F+   T+ +G+NG GKT+IL AI+
Sbjct: 62  NAFYLRRLTLKDFRRFSLLEIKFEEDLTVIIGNNGKGKTSILYAIA 107


>gi|227515675|ref|ZP_03945724.1| DNA repair protein RecN [Lactobacillus fermentum ATCC 14931]
 gi|227085978|gb|EEI21290.1| DNA repair protein RecN [Lactobacillus fermentum ATCC 14931]
          Length = 564

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          L L FD   T+  G+ G GK+ I++A+S L+ GRG
Sbjct: 16 LSLEFDDHMTVLTGETGAGKSIIIDAVSLLAGGRG 50


>gi|184155733|ref|YP_001844073.1| DNA repair protein RecN [Lactobacillus fermentum IFO 3956]
 gi|260663550|ref|ZP_05864440.1| DNA repair protein RecN [Lactobacillus fermentum 28-3-CHN]
 gi|183227077|dbj|BAG27593.1| DNA repair protein RecN [Lactobacillus fermentum IFO 3956]
 gi|260552091|gb|EEX25144.1| DNA repair protein RecN [Lactobacillus fermentum 28-3-CHN]
 gi|299783412|gb|ADJ41410.1| DNA repair protein RecN [Lactobacillus fermentum CECT 5716]
          Length = 564

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          L L FD   T+  G+ G GK+ I++A+S L+ GRG
Sbjct: 16 LSLEFDDHMTVLTGETGAGKSIIIDAVSLLAGGRG 50


>gi|323187247|gb|EFZ72559.1| recF/RecN/SMC N terminal domain protein [Escherichia coli RN587/1]
          Length = 550

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 30/46 (65%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
           N   ++ L + +FR ++ L + F+   T+ +G+NG GKT+IL AI+
Sbjct: 62  NAFYLRRLTLKDFRRFSLLEIKFEEDLTVIIGNNGKGKTSILYAIA 107


>gi|34540533|ref|NP_905012.1| antigen PgaA [Porphyromonas gingivalis W83]
 gi|1296973|emb|CAA65182.1| pgaA [Porphyromonas gingivalis]
 gi|34396846|gb|AAQ65911.1| antigen PgaA [Porphyromonas gingivalis W83]
          Length = 445

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I  ++I EFR+   L L F     + +GDNG GKT++L+A  ++
Sbjct: 2  ISRIHIEEFRDIGDLELFFLPGVNLLIGDNGSGKTSVLKACQYV 45


>gi|307271996|ref|ZP_07553263.1| DNA repair protein RecN [Enterococcus faecalis TX0855]
 gi|306511343|gb|EFM80346.1| DNA repair protein RecN [Enterococcus faecalis TX0855]
          Length = 530

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG 50


>gi|296125386|ref|YP_003632638.1| ABC transporter [Brachyspira murdochii DSM 12563]
 gi|296017202|gb|ADG70439.1| ABC transporter related protein [Brachyspira murdochii DSM 12563]
          Length = 606

 Score = 38.1 bits (87), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%)

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           VL G  +A   L++  T  A +L+LDE + HLD +   AL   + D G  IF T  D++ 
Sbjct: 402 VLSGGEMARLSLLAAITQCADVLILDEPTNHLDFETVEALASSLRDYGGTIFFTSHDRTF 461

Query: 355 FDSLNET 361
              L +T
Sbjct: 462 ASMLADT 468


>gi|256832209|ref|YP_003160936.1| chromosome segregation protein SMC [Jonesia denitrificans DSM
           20603]
 gi|256685740|gb|ACV08633.1| chromosome segregation protein SMC [Jonesia denitrificans DSM
           20603]
          Length = 1172

 Score = 38.1 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 39/183 (21%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L +  F+++AS  R  F+   T  VG NG GK+N+++A++++   +G    R   
Sbjct: 1   MHLKTLTVRGFKSFASATRFDFEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR---------SVRCL-------- 103
             DV       F  T AR     G A++S+ ++  D R           R L        
Sbjct: 61  MEDVI------FAGTSAR--PALGRAEVSLTIDNSDGRLPIEFSEVTITRTLFRQGGSEY 112

Query: 104 QINDVVIRVVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
            IN   +R++D         L + + +      +D +      ERR F++     +  +H
Sbjct: 113 AINGAPVRLLDIQELLSDTGLGREMHVIVGQGQLDTVLRATPTERRGFIEEAAGVL--KH 170

Query: 156 RRR 158
           RRR
Sbjct: 171 RRR 173


>gi|238493087|ref|XP_002377780.1| nuclear condensin complex subunit Smc4, putative [Aspergillus
           flavus NRRL3357]
 gi|220696274|gb|EED52616.1| nuclear condensin complex subunit Smc4, putative [Aspergillus
           flavus NRRL3357]
          Length = 1294

 Score = 38.1 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 5/57 (8%)

Query: 3   NRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           +R+ IK L ++ F++YA  ++V  F A  +  VG NG GK+N+++A+ F+    GFR
Sbjct: 88  SRMVIKTLILNNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDALLFVF---GFR 141


>gi|283853147|ref|ZP_06370401.1| ABC transporter related protein [Desulfovibrio sp. FW1012B]
 gi|283571486|gb|EFC19492.1| ABC transporter related protein [Desulfovibrio sp. FW1012B]
          Length = 658

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 24/102 (23%)

Query: 263 RTLIGPHRSDLIV-----------DYCDKAITIAHGSTGEQ-KVVLVGIFLAHARLISNT 310
           R + GP  + L V           DY ++ ++   G  GE+ ++VL G+F A A      
Sbjct: 414 RRMAGPKATHLEVCSILGLFLLGEDYWERRVSELSG--GEKSRLVLAGLFSARANF---- 467

Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
                 L+LDE + HLD + R AL R +++    I M   D+
Sbjct: 468 ------LVLDEPTNHLDLESREALVRALSEYAGTILMVAHDR 503


>gi|302689731|ref|XP_003034545.1| hypothetical protein SCHCODRAFT_81772 [Schizophyllum commune H4-8]
 gi|300108240|gb|EFI99642.1| hypothetical protein SCHCODRAFT_81772 [Schizophyllum commune H4-8]
          Length = 1107

 Score = 37.7 bits (86), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 13/147 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+F+ +S+F  +  L   F  Q    +G NG GK+ +L AI+    G+            
Sbjct: 100 IEFIEMSQFMCHKLLSFNFGPQINFIIGHNGSGKSAVLSAITVALGGK---------TAS 150

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  +   +F R EG + +A+++I L+ + D + +  +    ++ +     K    S+ +
Sbjct: 151 TGRGAGLKSFIR-EG-QSVAEVTIMLKNQGDEAYKPQEYGKSIV-ITRRFTKDGNSSYKI 207

Query: 127 PSMD-RIFSGLSMERRRFLDRMVFAID 152
            S D R+ S    E     D M   +D
Sbjct: 208 KSKDGRVISTKKDELSAICDHMGIQVD 234


>gi|124003422|ref|ZP_01688271.1| ATP-binding protein [Microscilla marina ATCC 23134]
 gi|123990991|gb|EAY30443.1| ATP-binding protein [Microscilla marina ATCC 23134]
          Length = 449

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLS 51
          +KIK L ++ FR +  L++ F D    +F+G NG GK+++L+A+   S
Sbjct: 1  MKIKELELNNFRGFKHLKIQFPDNNLAVFIGTNGSGKSSVLDALGMAS 48


>gi|110632905|ref|YP_673113.1| ATP-dependent OLD family endonuclease [Mesorhizobium sp. BNC1]
 gi|110283889|gb|ABG61948.1| ATP-dependent endonuclease of the OLD family-like protein
          [Chelativorans sp. BNC1]
          Length = 615

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRR 58
          ++++ L I+ FR  +   + F   HT+ VG N VGK+ + EA+   L P R FRR
Sbjct: 1  MRVRRLKITNFRGVSQGCIDFSG-HTLLVGGNNVGKSTVCEALDLVLGPERLFRR 54


>gi|284036061|ref|YP_003385991.1| ATPase [Spirosoma linguale DSM 74]
 gi|283815354|gb|ADB37192.1| ATPase-like protein [Spirosoma linguale DSM 74]
          Length = 366

 Score = 37.7 bits (86), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + +  I  F+ + S  +    Q  + VGDN VGKT++LEA++F
Sbjct: 6  LTYFKIENFKRFDSFEMSNLGQFNLIVGDNNVGKTSVLEALTF 48


>gi|325912269|ref|ZP_08174666.1| putative DNA replication and repair protein RecF [Lactobacillus
           iners UPII 143-D]
 gi|325475928|gb|EGC79097.1| putative DNA replication and repair protein RecF [Lactobacillus
           iners UPII 143-D]
          Length = 105

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           + S G+Q+ +++ I LA   L+       PILLLD++ + LD  ++  L   +    +Q 
Sbjct: 15  YASQGQQRSIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYING-KTQT 73

Query: 346 FMTGTD-KSVFDSLNETAKFMRI 367
           F+T TD  S+   + +  +  RI
Sbjct: 74  FITTTDINSISQEMIKIPRIFRI 96


>gi|302348755|ref|YP_003816393.1| DNA double-strand break repair rad50 ATPase [Acidilobus
           saccharovorans 345-15]
 gi|302329167|gb|ADL19362.1| DNA double-strand break repair rad50 ATPase [Acidilobus
           saccharovorans 345-15]
          Length = 912

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           ++VD   +   IA  S GEQ V+ +   LA  R++ +  GF   LLLDE +  LD+++R 
Sbjct: 804 VVVDRQGRERPIASLSGGEQIVIALAYVLALNRMMHSNIGF---LLLDEPTDMLDDERRR 860

Query: 333 ALFRIV 338
           AL  ++
Sbjct: 861 ALVDVL 866


>gi|237813687|ref|YP_002898138.1| DNA repair protein RecN [Burkholderia pseudomallei MSHR346]
 gi|237504744|gb|ACQ97062.1| DNA repair protein RecN [Burkholderia pseudomallei MSHR346]
          Length = 549

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 27/115 (23%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++     R     + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114
            GS              G ADIS +  T  DR  R L        D V+  RVVD
Sbjct: 57  TGS--------------GRADISAEF-TPHDRVARWLDEHAFDAEDTVMLRRVVD 96


>gi|323448058|gb|EGB03962.1| hypothetical protein AURANDRAFT_72635 [Aureococcus
          anophagefferens]
          Length = 1259

 Score = 37.7 bits (86), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF--LSP 52
          M   + IK ++IS FR++     +  FD  H   +G NG GK+N  +A+ F  LSP
Sbjct: 1  MAAALSIKTISISGFRSFRQQDAIESFDPGHNALIGRNGSGKSNFFDAVQFVLLSP 56


>gi|119510679|ref|ZP_01629807.1| ATP binding protein [Nodularia spumigena CCY9414]
 gi|119464633|gb|EAW45542.1| ATP binding protein [Nodularia spumigena CCY9414]
          Length = 423

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFL 50
          +K+K L +  FR    L L F+  + TI +G NGVGK++I+E ++ L
Sbjct: 1  MKVKRLKMQSFRGIGDLTLDFNQNEPTILIGINGVGKSSIIECLAIL 47


>gi|332664566|ref|YP_004447354.1| SMC domain-containing protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333380|gb|AEE50481.1| SMC domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 398

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT---RIGSPSFFSTFARVEGMEGLA 86
            +F+G+NG GK+NILEA+ F S G   R  +   ++   R+  PS     +  +G +   
Sbjct: 37  NVFIGENGCGKSNILEAVGFASAGVENRVDNENLISKGVRVAKPSLI--ISNFKGRKQAK 94

Query: 87  DISIKLETRDDRSV 100
             +I++  +D +++
Sbjct: 95  QFNIEILVKDKKNL 108


>gi|326771794|ref|ZP_08231079.1| chromosome segregation protein SMC [Actinomyces viscosus C505]
 gi|326637927|gb|EGE38828.1| chromosome segregation protein SMC [Actinomyces viscosus C505]
          Length = 435

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          + +K L I  F+++AS   L  +   T  VG NG GK+N+++A++++   +G    R  S
Sbjct: 22 VHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGAKNLRGGS 81

Query: 61 YADVTRIGSPS 71
           ADV   G+ S
Sbjct: 82 MADVIFAGAGS 92


>gi|170589952|ref|XP_001899737.1| SMC proteins Flexible Hinge Domain containing protein [Brugia
          malayi]
 gi|158592863|gb|EDP31459.1| SMC proteins Flexible Hinge Domain containing protein [Brugia
          malayi]
          Length = 1204

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK +NIS FR+Y    +  F  +H + VG NG GK+N   AI F+
Sbjct: 3  IKEVNISGFRSYRETTVNDFSPRHNVVVGRNGSGKSNFFFAIQFV 47


>gi|302343404|ref|YP_003807933.1| chromosome segregation protein SMC [Desulfarculus baarsii DSM
          2075]
 gi|301640017|gb|ADK85339.1| chromosome segregation protein SMC [Desulfarculus baarsii DSM
          2075]
          Length = 1188

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 14/94 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAISFL---SPGRGFRRA 59
          +K+K L IS F+++A  R V D    +   VG NG GK+N+++AI ++      R  R  
Sbjct: 1  MKVKRLEISGFKSFAQ-RAVLDFPDGLCAVVGPNGCGKSNVVDAIRWVLGEQSARQLRGQ 59

Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLE 93
          +  DV   G+ S   T        GLA++SI  E
Sbjct: 60 AMEDVIFNGAQSHKPT--------GLAEVSIVFE 85


>gi|260579026|ref|ZP_05846928.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
          43734]
 gi|258602891|gb|EEW16166.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
          43734]
          Length = 549

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          K++  N    +NY +    F  Q+ + VG NG GK+ +LEAI     GR
Sbjct: 10 KVRIRNFKGLQNYEA---TFSPQYNVIVGANGAGKSTLLEAIGLAIGGR 55


>gi|312070433|ref|XP_003138144.1| SMC protein Flexible Hinge Domain containing protein [Loa loa]
 gi|307766691|gb|EFO25925.1| SMC protein Flexible Hinge Domain containing protein [Loa loa]
          Length = 1160

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK +NIS FR+Y    +  F  +H + VG NG GK+N   AI F+
Sbjct: 3  IKEVNISGFRSYRETTVNDFSPRHNVVVGRNGSGKSNFFFAIQFV 47


>gi|224099040|ref|XP_002311359.1| predicted protein [Populus trichocarpa]
 gi|222851179|gb|EEE88726.1| predicted protein [Populus trichocarpa]
          Length = 1476

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 16/132 (12%)

Query: 30   TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS 89
            T  +G +G GKT +++ +S    GR     +  ++   G P    TFAR+ G    ADI 
Sbjct: 917  TALMGVSGAGKTTLMDVLS----GRKTGGTTEGEIRIGGYPKVQDTFARISGYCEQADIH 972

Query: 90   IKLETRDDRSV--RCLQINDVV-----IRVVDELNKHLRISWLVPSMDRI--FSGLSMER 140
                T ++  V    L++  V+        V+E+ + + + W+  S+  I   SGLS E+
Sbjct: 973  SPQITIEESVVFSAWLRLPSVIDPKTKFDFVNEVLETIELDWIKDSLVGIPGISGLSTEQ 1032

Query: 141  RRFLDRMVFAID 152
            R+   R+  A++
Sbjct: 1033 RK---RLTIAVE 1041


>gi|291614647|ref|YP_003524804.1| SMC domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291584759|gb|ADE12417.1| SMC domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 685

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 25/43 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + IK L I  FR    + + FD +  I VG N +GKT ILE+I
Sbjct: 1  MHIKTLRIKNFRAIEDVNVEFDNRVNIIVGPNAIGKTTILESI 43


>gi|325067015|ref|ZP_08125688.1| chromosome segregation protein SMC [Actinomyces oris K20]
          Length = 194

 Score = 37.7 bits (86), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 42/192 (21%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L I  F+++AS   L  +   T  VG NG GK+N+++A++++   +G    R  S
Sbjct: 1   MHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGAKNLRGGS 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---------RCL-------- 103
            ADV   G+ S  +         G A++S+ ++  D             R L        
Sbjct: 61  MADVIFAGAGSRPAL--------GRAEVSLTIDNTDGALPIDYTEVTISRTLFRGGGSEY 112

Query: 104 QINDVVIRVVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           +IN    R++D         L + + +      +D + S    +RR F++     +  +H
Sbjct: 113 RINGSPCRLLDVQELLSDTGLGRQMHVIVGQGQLDAVLSATPEDRRGFIEEAAGVL--KH 170

Query: 156 RRRMIDFERLMR 167
           R+R    ER +R
Sbjct: 171 RKRK---ERALR 179


>gi|294827836|ref|NP_711490.2| chromosome segregation protein [Leptospira interrogans serovar
          Lai str. 56601]
 gi|293385681|gb|AAN48508.2| chromosome segregation protein [Leptospira interrogans serovar
          Lai str. 56601]
          Length = 924

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
          +K LNI  F+ +A    ++ D   T  VG NG GK+NI++A+ ++      +G R     
Sbjct: 3  LKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGDKMD 62

Query: 63 DVTRIGSPS 71
          DV   GS +
Sbjct: 63 DVIFHGSEA 71


>gi|167767268|ref|ZP_02439321.1| hypothetical protein CLOSS21_01787 [Clostridium sp. SS2/1]
 gi|167711243|gb|EDS21822.1| hypothetical protein CLOSS21_01787 [Clostridium sp. SS2/1]
          Length = 545

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + I  F+ Y    ++FD    I VGDN  GK+ ILEAI+    G
Sbjct: 6  VKIHNFKCYRDFEIIFDEGLNIVVGDNEAGKSTILEAINLALTG 49


>gi|45658257|ref|YP_002343.1| chromosome segregation protein [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
 gi|45601499|gb|AAS70980.1| chromosome segregation protein [Leptospira interrogans serovar
          Copenhageni str. Fiocruz L1-130]
          Length = 924

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
          +K LNI  F+ +A    ++ D   T  VG NG GK+NI++A+ ++      +G R     
Sbjct: 3  LKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGDKMD 62

Query: 63 DVTRIGSPS 71
          DV   GS +
Sbjct: 63 DVIFHGSEA 71


>gi|212637201|ref|YP_002313726.1| ATPase [Shewanella piezotolerans WP3]
 gi|212558685|gb|ACJ31139.1| ATPase [Shewanella piezotolerans WP3]
          Length = 433

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 27/42 (64%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          I  L ++ FR++    L FD + T+ +  NG GK+++L+A++
Sbjct: 3  IDTLKLTNFRSFEDFELQFDPRLTVLIARNGAGKSSVLDAVA 44


>gi|27379819|ref|NP_771348.1| ATP-binding protein [Bradyrhizobium japonicum USDA 110]
 gi|27352972|dbj|BAC49973.1| bll4708 [Bradyrhizobium japonicum USDA 110]
          Length = 255

 Score = 37.7 bits (86), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFLS------PGRGFRRASYADV 64
            L FDA  TI VG+NG GK+ ILE I+ L+       G+G+    ++D 
Sbjct: 43 FELSFDAAITIIVGENGTGKSTILEGIAALAGYDDAGGGKGYMPVDHSDA 92


>gi|317405488|gb|EFV85797.1| ABC transporter like protein [Achromobacter xylosoxidans C54]
          Length = 537

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKT---NILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           ++ L   FDA+ T  VG NGVGKT    IL      S GR  R  S   + +  SP   +
Sbjct: 22  FSGLDETFDARPTGLVGRNGVGKTVLARILAGQLPPSSGRCLRSGSVFYLAQQISPPAGA 81

Query: 75  TFARVEGMEGLADISIKLET 94
           T A + G++   D   ++E 
Sbjct: 82  TVASLAGLQATLDALARIEA 101


>gi|317508545|ref|ZP_07966210.1| RecF/RecN/SMC N terminal domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
 gi|316253171|gb|EFV12576.1| RecF/RecN/SMC N terminal domain-containing protein [Segniliparus
          rugosus ATCC BAA-974]
          Length = 774

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          + ++ L +  F+++AS   LVF+   T  VG NG GK+NI +A+S++   +G +
Sbjct: 1  MHLRSLTLKGFKSFASPTTLVFEPGITAVVGANGSGKSNIADALSWVMGEQGAK 54


>gi|198463652|ref|XP_002135548.1| GA28617 [Drosophila pseudoobscura pseudoobscura]
 gi|198151353|gb|EDY74175.1| GA28617 [Drosophila pseudoobscura pseudoobscura]
          Length = 307

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 90/214 (42%), Gaps = 41/214 (19%)

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFE 163
           N  ++   + L KH+   WL+P++ +    LS     FL      I+    H      FE
Sbjct: 84  NGALMHCAEYLEKHIE-DWLLPALRK----LSATHNYFLFDCPGQIELYTHHNAMARVFE 138

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN-IARVEM--INALSS--LIMEYVQK 218
           RL R R  L+T    DS +CS     +A L + +N + R+ +  +N LS   L+ ++  K
Sbjct: 139 RLERERYSLVTVNLIDSHYCSEPAKFIATLLMALNTMMRMSLPHVNVLSKADLLRKHESK 198

Query: 219 ENFP--------HIKLSLTGFLDG-------KFDQSFCALKEEYAK---KLFDGRKMDSM 260
            +F          +K  L    D        K +++ C++ E+YA    +L D    DSM
Sbjct: 199 LHFNVDYYTDVLDLKYLLEKLDDDPTMRKYQKLNEAICSMVEDYALVSFQLLDAFSTDSM 258

Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            R           + ++ DKA    + +  EQ V
Sbjct: 259 LR-----------LRNHIDKANGYVYKAGEEQTV 281


>gi|332638376|ref|ZP_08417239.1| ABC transporter, ATP-binding protein [Weissella cibaria KACC 11862]
          Length = 219

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
           R+     ++ + G  + DL  DY DKA+T   G   ++  VL  +             F 
Sbjct: 104 RQQTPNEQQQIAGLEQMDLPADYLDKAVTELSGGERQRVGVLRNLL------------FP 151

Query: 315 P-ILLLDEISAHLDEDKRNALFRIV 338
           P +LLLDEIS  LD + +  ++R +
Sbjct: 152 PKVLLLDEISTGLDAETKQVIWRAI 176


>gi|68536328|ref|YP_251033.1| hypothetical protein jk1249 [Corynebacterium jeikeium K411]
 gi|68263927|emb|CAI37415.1| hypothetical protein jk1249 [Corynebacterium jeikeium K411]
          Length = 543

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          K++  N    +NY +    F  Q+ + VG NG GK+ +LEAI     GR
Sbjct: 4  KVRIRNFKGLQNYEA---TFSPQYNVIVGANGAGKSTLLEAIGLAIGGR 49


>gi|229497088|ref|ZP_04390792.1| putative ATP-NAD kinase [Porphyromonas endodontalis ATCC 35406]
 gi|229316013|gb|EEN81942.1| putative ATP-NAD kinase [Porphyromonas endodontalis ATCC 35406]
          Length = 289

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
           PI+L D ++ HL    R++ F +VTD    +F TGT  ++  +     + +R+SNH
Sbjct: 218 PIVLPDTVTLHLKVFSRSSTFMLVTDGNVAVFPTGTPLTIARA-KHPVRLIRLSNH 272


>gi|291559422|emb|CBL38222.1| RecF/RecN/SMC N terminal domain [butyrate-producing bacterium
          SSC/2]
          Length = 489

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + I  F+ Y    ++FD    I VGDN  GK+ ILEAI+    G
Sbjct: 6  VKIHNFKCYRDFEIIFDEGLNIVVGDNEAGKSTILEAINLALTG 49


>gi|49481963|gb|AAT66693.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A87]
          Length = 573

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 19/103 (18%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    SL   FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G+
Sbjct: 5   LSIKNFAIIESLSXSFDKGLTVLXGETGAGKSIIIDAIHLLIGGRG-----SAEFVRFGA 59

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
                  A +EG+  L D        DDR   C +  +V I V
Sbjct: 60  EK-----AEIEGL-FLLD--------DDRHPCCQKCAEVGIDV 88


>gi|28378330|ref|NP_785222.1| cell division protein Smc [Lactobacillus plantarum WCFS1]
 gi|28271165|emb|CAD64070.1| cell division protein Smc [Lactobacillus plantarum WCFS1]
          Length = 1185

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++K L IS F+++A   ++ F A  T  VG NG GK+NI+EAI ++      +  R   
Sbjct: 1  MQLKSLEISGFKSFADKTKIDFQAGMTGIVGPNGSGKSNIIEAIRWVLGEQAVKSLRGTK 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MTDVIFAGS 69


>gi|254556538|ref|YP_003062955.1| cell division protein Smc [Lactobacillus plantarum JDM1]
 gi|300767267|ref|ZP_07077179.1| cell division protein Smc [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
 gi|308180481|ref|YP_003924609.1| cell division protein Smc [Lactobacillus plantarum subsp.
          plantarum ST-III]
 gi|254045465|gb|ACT62258.1| cell division protein Smc [Lactobacillus plantarum JDM1]
 gi|300495086|gb|EFK30242.1| cell division protein Smc [Lactobacillus plantarum subsp.
          plantarum ATCC 14917]
 gi|308045972|gb|ADN98515.1| cell division protein Smc [Lactobacillus plantarum subsp.
          plantarum ST-III]
          Length = 1185

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++K L IS F+++A   ++ F A  T  VG NG GK+NI+EAI ++      +  R   
Sbjct: 1  MQLKSLEISGFKSFADKTKIDFQAGMTGIVGPNGSGKSNIIEAIRWVLGEQAVKSLRGTK 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MTDVIFAGS 69


>gi|152976578|ref|YP_001376095.1| DNA repair protein RecN [Bacillus cereus subsp. cytotoxis NVH
          391-98]
 gi|152025330|gb|ABS23100.1| DNA repair protein RecN [Bacillus cytotoxicus NVH 391-98]
          Length = 579

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 13/71 (18%)

Query: 15 FRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           RN+A   SL + F    T+  G+ G GK+ I++AIS L  GRG      A+  R G+  
Sbjct: 7  IRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVRYGTEK 61

Query: 72 FFSTFARVEGM 82
               A +EG+
Sbjct: 62 -----AEIEGL 67


>gi|225619141|ref|YP_002720367.1| hypothetical protein BHWA1_00194 [Brachyspira hyodysenteriae WA1]
 gi|225213960|gb|ACN82694.1| hypothetical ABC transporter ATP-binding protein [Brachyspira
           hyodysenteriae WA1]
          Length = 605

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 35/67 (52%)

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           VL G  +A   L++  T  A +L+LDE + HLD +   AL   + D G  IF T  D++ 
Sbjct: 402 VLSGGEMARLSLLAAITQCADVLILDEPTNHLDFETVEALANSLRDYGGTIFFTSHDRTF 461

Query: 355 FDSLNET 361
              L +T
Sbjct: 462 ASLLADT 468


>gi|115526051|ref|YP_782962.1| ATP-dependent OLD family endonuclease [Rhodopseudomonas palustris
          BisA53]
 gi|115519998|gb|ABJ07982.1| ATP-dependent endonuclease of the OLD family-like protein
          [Rhodopseudomonas palustris BisA53]
          Length = 582

 Score = 37.7 bits (86), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62
          + I  L +  FR+ A + + F  + T+ VG+N  GK+NI++A+  L+     RR  Y   
Sbjct: 1  MHIDCLRLQRFRSCADVTVRFHRELTVLVGENNGGKSNIVDALRLLTLPLSGRRDRYPED 60

Query: 63 -DVTRIGSPSFFSTFARVEG----MEGLADISIKLETRD 96
           D+ R  + + ++   R  G    M+GL   ++   T D
Sbjct: 61 DDLRRGSTETHYALEGRFAGLGDTMKGLLISAVPDPTAD 99


>gi|221043536|dbj|BAH13445.1| unnamed protein product [Homo sapiens]
          Length = 516

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50
          +K + I  F++Y   +++   Q  T  +G NG GK+N+++AISF+
Sbjct: 4  LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48


>gi|183220805|ref|YP_001838801.1| chromosome segregation ATPase [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Paris)']
 gi|189910905|ref|YP_001962460.1| chromosome segregation ATPase [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167775581|gb|ABZ93882.1| Chromosome segregation ATPase [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167779227|gb|ABZ97525.1| Chromosome segregation ATPase [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Paris)']
          Length = 927

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
          +K LNI  F+ +A    + FD   T  VG NG GK+NI++++ ++      +G R     
Sbjct: 3  LKSLNIVGFKTFADETEINFDPGFTAVVGPNGSGKSNIVDSVKWVFGEKSAKGLRGEKMD 62

Query: 63 DVTRIGSPS 71
          DV   G+ S
Sbjct: 63 DVIFHGTES 71


>gi|171186263|ref|YP_001795182.1| SMC domain-containing protein [Thermoproteus neutrophilus V24Sta]
 gi|170935475|gb|ACB40736.1| SMC domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 702

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
           S GEQ ++ + + +A AR +    G AP ++ DE + HLDE+ R  +  +V D+
Sbjct: 626 SLGEQNLLALSLRVALARAL---LGGAPFMMFDEPTEHLDEEHRRKIVELVRDL 676


>gi|307628250|gb|ADN72554.1| hypothetical protein UM146_15975 [Escherichia coli UM146]
          Length = 754

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI F+ I  FR   S+R+    + T+FVG N  GKT  +EA+
Sbjct: 1  MKINFIEIKNFRKLKSVRIDIAEKTTLFVGANNSGKTAAMEAL 43


>gi|160947484|ref|ZP_02094651.1| hypothetical protein PEPMIC_01418 [Parvimonas micra ATCC 33270]
 gi|158446618|gb|EDP23613.1| hypothetical protein PEPMIC_01418 [Parvimonas micra ATCC 33270]
          Length = 511

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYA 62
          +KI  + I+ FR Y   + + FD   T+ VG N VGK+ ILEA+  F + G+G  +    
Sbjct: 1  MKITSMKINNFRGYNKEINIKFD-DLTVIVGKNDVGKSTILEALDIFFNDGKGTIKLDKN 59

Query: 63 DVT 65
          DV 
Sbjct: 60 DVN 62


>gi|37522431|ref|NP_925808.1| hypothetical protein glr2862 [Gloeobacter violaceus PCC 7421]
 gi|35213432|dbj|BAC90803.1| glr2862 [Gloeobacter violaceus PCC 7421]
          Length = 1002

 Score = 37.4 bits (85), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 7/73 (9%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L++S F +Y   RL F   HT  + G NG GK+++LEA++++  G+  R  S  DV R 
Sbjct: 5  HLSLSNFLSYRDGRLDFSGIHTACICGANGSGKSSLLEALTWVLWGKS-RADSDDDVVRR 63

Query: 68 GSPSFFSTFARVE 80
          G     +T ARV+
Sbjct: 64 G-----ATEARVD 71


>gi|315640112|ref|ZP_07895234.1| cell division protein Smc [Enterococcus italicus DSM 15952]
 gi|315484089|gb|EFU74563.1| cell division protein Smc [Enterococcus italicus DSM 15952]
          Length = 1195

 Score = 37.4 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 7  IKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
          +K + ++ F+++A+   + F+ Q T  VG NG GK+NI EAI ++   S  +  R     
Sbjct: 3  LKRIEVAGFKSFANRTTIQFEDQVTAIVGPNGSGKSNITEAIRWVLGESSAKSLRGGRMP 62

Query: 63 DVTRIGSPS 71
          D+   GS S
Sbjct: 63 DIIFAGSES 71


>gi|81428297|ref|YP_395297.1| DNA repair and genetic recombination protein N [Lactobacillus
          sakei subsp. sakei 23K]
 gi|78609939|emb|CAI54986.1| DNA repair and genetic recombination protein N [Lactobacillus
          sakei subsp. sakei 23K]
          Length = 567

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 13/79 (16%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I +F     L + FD   T+  G+ G GK+ I++A+  L+ GR            
Sbjct: 2  LQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGR------------ 49

Query: 67 IGSPSFFSTFARVEGMEGL 85
           GS  F  T A+   +EGL
Sbjct: 50 -GSQDFIRTGAKKATLEGL 67


>gi|325182712|emb|CCA17167.1| structural maintenance of chromosomes protein 3 put [Albugo
          laibachii Nc14]
          Length = 1215

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 7  IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF 49
          IK + +S FR+Y    +V  F  +H + +G NG GK+N  +AI F
Sbjct: 3  IKQVFVSGFRSYKDQLVVEPFSKEHNVVIGRNGTGKSNFFDAIRF 47


>gi|326403503|ref|YP_004283585.1| putative ABC transporter ATP-binding protein [Acidiphilium
           multivorum AIU301]
 gi|325050365|dbj|BAJ80703.1| putative ABC transporter ATP-binding protein [Acidiphilium
           multivorum AIU301]
          Length = 622

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 306 LISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           L++  T  AP +L+LDE + HLD D R AL R +TD    + +   D  + D
Sbjct: 438 LLALATRDAPQVLILDEPTNHLDIDAREALVRAITDFAGAVVLVTHDTHLLD 489


>gi|4127535|emb|CAA09427.1| RecN protein [Geobacillus stearothermophilus]
          Length = 56

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG
Sbjct: 5  LSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG 50


>gi|325672991|ref|ZP_08152685.1| ATP-dependent endonuclease [Rhodococcus equi ATCC 33707]
 gi|325556244|gb|EGD25912.1| ATP-dependent endonuclease [Rhodococcus equi ATCC 33707]
          Length = 610

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA 59
          +K++ ++++ FR      ++ D  H++ VG N VGK+ I EA+   L P R FRR 
Sbjct: 1  MKVRRISLTNFRGVQRGTVLLDG-HSLLVGRNSVGKSTICEALDLVLGPERLFRRP 55


>gi|307352886|ref|YP_003893937.1| chromosome segregation protein SMC [Methanoplanus petrolearius
          DSM 11571]
 gi|307156119|gb|ADN35499.1| chromosome segregation protein SMC [Methanoplanus petrolearius
          DSM 11571]
          Length = 1146

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 7  IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62
          I  L I  F+++A   ++ F    T+  G NG GK+NI+++I F   LS  RG R     
Sbjct: 3  ITELEIDNFKSFAKKTKIPFYEGFTVISGPNGSGKSNIIDSILFCLALSSARGLRAEKLT 62

Query: 63 DVTRIGS 69
          D+  + S
Sbjct: 63 DLINLNS 69


>gi|228992921|ref|ZP_04152845.1| DNA repair protein recN [Bacillus pseudomycoides DSM 12442]
 gi|228998965|ref|ZP_04158547.1| DNA repair protein recN [Bacillus mycoides Rock3-17]
 gi|228760582|gb|EEM09546.1| DNA repair protein recN [Bacillus mycoides Rock3-17]
 gi|228766778|gb|EEM15417.1| DNA repair protein recN [Bacillus pseudomycoides DSM 12442]
          Length = 583

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 13/71 (18%)

Query: 15 FRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           RN+A   SL + F    T+  G+ G GK+ I++AIS L  GRG      A+  R G+  
Sbjct: 11 IRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVRYGTEK 65

Query: 72 FFSTFARVEGM 82
               A +EG+
Sbjct: 66 -----AEIEGL 71


>gi|283786951|ref|YP_003366816.1| hypothetical protein ROD_33381 [Citrobacter rodentium ICC168]
 gi|282950405|emb|CBG90054.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 548

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAI 47
          +K+  L ISEF+N  ++ + FD     T+ +G NG GK+N++EA+
Sbjct: 1  MKLDNLWISEFKNLKNINIDFDEGELVTVIIGWNGAGKSNVIEAL 45


>gi|260438583|ref|ZP_05792399.1| putative ATP binding protein [Butyrivibrio crossotus DSM 2876]
 gi|292809174|gb|EFF68379.1| putative ATP binding protein [Butyrivibrio crossotus DSM 2876]
          Length = 438

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +K+K + I  +R +    + FD   T+ VG NG GKT IL+A++
Sbjct: 1  MKLKNIKIENYRCFKRADIDFDENITLIVGKNGAGKTAILDAVA 44


>gi|209525227|ref|ZP_03273770.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209494412|gb|EDZ94724.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 395

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 29/51 (56%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          M+   KI++L +  +R   +L L      T+F+G NG GK+ I +  +FLS
Sbjct: 1  MSTIPKIEYLKVINYRALQNLELKRITPLTVFLGPNGSGKSTIFDVFAFLS 51


>gi|319941125|ref|ZP_08015461.1| hypothetical protein HMPREF9464_00680 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805482|gb|EFW02284.1| hypothetical protein HMPREF9464_00680 [Sutterella wadsworthensis
           3_1_45B]
          Length = 527

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L+I  F+ + +L + F+    I VG+N VGK+ IL+AI  L   + ++ +  + +  
Sbjct: 4   IKSLHIEGFKKFTNLDVEFNQYMNILVGENEVGKSTILDAIK-LVLNQQYKNSDKSVLKD 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101
           + +      F     ++ L  I I++E   D S R
Sbjct: 63  LFNAKQIRDFECNPSIKTLPKILIEIELELDTSNR 97


>gi|296412283|ref|XP_002835854.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629650|emb|CAZ80011.1| unnamed protein product [Tuber melanosporum]
          Length = 1345

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          K+  L +  F N  S  + F A  T+ VG NG GKT I+E + + + G
Sbjct: 46 KLAILGVRSFDNTRSETIQFHAPLTLIVGYNGSGKTTIIECLKYATTG 93


>gi|257888477|ref|ZP_05668130.1| DNA repair protein RecN [Enterococcus faecium 1,141,733]
 gi|257897148|ref|ZP_05676801.1| DNA repair protein RecN [Enterococcus faecium Com12]
 gi|257824531|gb|EEV51463.1| DNA repair protein RecN [Enterococcus faecium 1,141,733]
 gi|257833713|gb|EEV60134.1| DNA repair protein RecN [Enterococcus faecium Com12]
          Length = 561

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 3  LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 57

Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97
           G+          +   EG +++ ++L  ET +D
Sbjct: 58 QGAEKCILEGLFELPKQEGFSELMVELGIETDED 91


>gi|229086748|ref|ZP_04218914.1| DNA repair protein recN [Bacillus cereus Rock3-44]
 gi|228696569|gb|EEL49388.1| DNA repair protein recN [Bacillus cereus Rock3-44]
          Length = 583

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 13/71 (18%)

Query: 15 FRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           RN+A   SL + F    T+  G+ G GK+ I++AIS L  GRG      A+  R G+  
Sbjct: 11 IRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVRYGTEK 65

Query: 72 FFSTFARVEGM 82
               A +EG+
Sbjct: 66 -----AEIEGL 71


>gi|291532567|emb|CBL05680.1| hypothetical protein MHY_05970 [Megamonas hypermegale ART12/1]
          Length = 176

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 50/126 (39%), Gaps = 25/126 (19%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS 89
            IF G N  GKTNI+EAI F S G   R  +  D+   G                 A I+
Sbjct: 26  NIFTGFNAQGKTNIIEAIYFSSLGISHRTRTEGDLILWGKDE--------------ASIN 71

Query: 90  IKLETRDDRSV----------RCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME 139
           +K   RD  S+          + L  N  +I+  D L   L +    P    +  G  + 
Sbjct: 72  VKFSKRDINSILKIILKKNKRKELNFNGEIIKQKD-LPGLLTMILFSPEDLMLIKGSPLL 130

Query: 140 RRRFLD 145
           RRRF+D
Sbjct: 131 RRRFID 136


>gi|167757406|ref|ZP_02429533.1| hypothetical protein CLORAM_02956 [Clostridium ramosum DSM 1402]
 gi|167703581|gb|EDS18160.1| hypothetical protein CLORAM_02956 [Clostridium ramosum DSM 1402]
          Length = 651

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          IKI  + ++ F+   +L L FD  +    GDNG GKT I+ A  +L
Sbjct: 3  IKINQMKLTNFQGIRNLELNFDESNKSIRGDNGTGKTTIINAYYYL 48


>gi|293571742|ref|ZP_06682761.1| DNA repair protein RecN [Enterococcus faecium E980]
 gi|291608199|gb|EFF37502.1| DNA repair protein RecN [Enterococcus faecium E980]
          Length = 560

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2  LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56

Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97
           G+          +   EG +++ ++L  ET +D
Sbjct: 57 QGAEKCILEGLFELPKQEGFSELMVELGIETDED 90


>gi|148260313|ref|YP_001234440.1| ABC transporter related [Acidiphilium cryptum JF-5]
 gi|146401994|gb|ABQ30521.1| ABC transporter related protein [Acidiphilium cryptum JF-5]
          Length = 622

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 306 LISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           L++  T  AP +L+LDE + HLD D R AL R +TD    + +   D  + D
Sbjct: 438 LLALATRDAPQVLILDEPTNHLDIDAREALVRAITDFAGAVVLVTHDTHLLD 489


>gi|315282233|ref|ZP_07870687.1| DNA repair protein RecN [Listeria marthii FSL S4-120]
 gi|313614135|gb|EFR87825.1| DNA repair protein RecN [Listeria marthii FSL S4-120]
          Length = 324

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 10/81 (12%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG      AD  R
Sbjct: 2  LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56

Query: 67 IGSPSFFSTFARVEGMEGLAD 87
           G          ++G+ GLA+
Sbjct: 57 HGEERL-----ELQGLFGLAE 72


>gi|257899146|ref|ZP_05678799.1| DNA repair protein RecN [Enterococcus faecium Com15]
 gi|257837058|gb|EEV62132.1| DNA repair protein RecN [Enterococcus faecium Com15]
          Length = 561

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 3  LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 57

Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97
           G+          +   EG +++ ++L  ET +D
Sbjct: 58 QGAEKCILEGLFELPKQEGFSELMVELGIETDED 91


>gi|257784654|ref|YP_003179871.1| chromosome segregation protein SMC [Atopobium parvulum DSM 20469]
 gi|257473161|gb|ACV51280.1| chromosome segregation protein SMC [Atopobium parvulum DSM 20469]
          Length = 1179

 Score = 37.4 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 12/94 (12%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
          +K L +  F+++A   ++VFD   T+ VG NG GK+N+ +AI ++      +  R  +  
Sbjct: 3  LKSLTLKGFKSFADKTQMVFDPGLTVVVGPNGSGKSNVSDAILWVLGEQSAKMLRGQAME 62

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
          DV   GS +         G  G+A++++ L+  D
Sbjct: 63 DVIFSGSSA--------RGAVGVAEVTLVLDNSD 88


>gi|37523420|ref|NP_926797.1| hypothetical protein gll3851 [Gloeobacter violaceus PCC 7421]
 gi|35214424|dbj|BAC91792.1| gll3851 [Gloeobacter violaceus PCC 7421]
          Length = 500

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          L IS F+N  ++ + F    T   G NGVGK+N+ +AI+FLS
Sbjct: 5  LKISGFKNLVNVDVRF-GPFTCIAGANGVGKSNLFDAITFLS 45


>gi|148675530|gb|EDL07477.1| structural maintenance of chromosomes 1A, isoform CRA_b [Mus
          musculus]
          Length = 1043

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50
          +K + I  F++Y   +++   Q  T  +G NG GK+N+++AISF+
Sbjct: 38 LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 82


>gi|117938776|gb|AAH03279.1| Smc1a protein [Mus musculus]
 gi|118599981|gb|AAH25590.1| Smc1a protein [Mus musculus]
          Length = 679

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50
          +K + I  F++Y   +++   Q  T  +G NG GK+N+++AISF+
Sbjct: 4  LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48


>gi|331083866|ref|ZP_08332975.1| hypothetical protein HMPREF0992_01899 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403291|gb|EGG82851.1| hypothetical protein HMPREF0992_01899 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 242

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 24/114 (21%)

Query: 11  NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS---YADV 64
           NIS  RN   L   F++  T F G+NG GK+ +LEAI+     +P  G +  S   Y DV
Sbjct: 25  NISVLRNLKHLE--FNSNITFFAGENGSGKSTLLEAIAVAYGFNPEGGTKNYSFETYHDV 82

Query: 65  TRIGSPSFFST-FARVEG-----MEGLADISIKLETRD----------DRSVRC 102
           + +    + S  F + E       E   +++ K E  D           RS+ C
Sbjct: 83  SELSEAIYISKGFKKTESGYFFRAESFFNVATKAEEYDAFNPNGPSYGGRSLHC 136


>gi|255318626|ref|ZP_05359857.1| chromosome segregation protein SMC [Acinetobacter radioresistens
          SK82]
 gi|262379148|ref|ZP_06072304.1| chromosome segregation protein SMC [Acinetobacter radioresistens
          SH164]
 gi|255304308|gb|EET83494.1| chromosome segregation protein SMC [Acinetobacter radioresistens
          SK82]
 gi|262298605|gb|EEY86518.1| chromosome segregation protein SMC [Acinetobacter radioresistens
          SH164]
          Length = 1149

 Score = 37.4 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L +S F+++A S  L F    +  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1  MRLSSLKLSGFKSFADSTTLNFRDSRSAVVGPNGCGKSNVIDAIRWVMGESSARQLRGGS 60

Query: 61 YADVTRIGS 69
            DV   G+
Sbjct: 61 MQDVIFTGT 69


>gi|227550449|ref|ZP_03980498.1| DNA repair protein RecN [Enterococcus faecium TX1330]
 gi|227180350|gb|EEI61322.1| DNA repair protein RecN [Enterococcus faecium TX1330]
          Length = 560

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2  LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56

Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97
           G+          +   EG +++ ++L  ET +D
Sbjct: 57 QGAEKCILEGLFELPKQEGFSELMVELGIETDED 90


>gi|293377373|ref|ZP_06623577.1| DNA repair protein RecN [Enterococcus faecium PC4.1]
 gi|292644065|gb|EFF62171.1| DNA repair protein RecN [Enterococcus faecium PC4.1]
          Length = 560

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2  LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56

Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97
           G+          +   EG +++ ++L  ET +D
Sbjct: 57 QGAEKCILEGLFELPKQEGFSELMVELGIETDED 90


>gi|169841780|ref|ZP_02874889.1| chromosome segregation protein SMC [candidate division TM7
          single-cell isolate TM7a]
          Length = 55

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 7/54 (12%)

Query: 7  IKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          +K L ++ F+++A+  +  FD+  T  VG NG GK+NIL+AI       GFRRA
Sbjct: 3  LKALELTGFKSFANKTVEEFDSGITSIVGPNGSGKSNILDAIC------GFRRA 50


>gi|303230306|ref|ZP_07317071.1| hypothetical protein HMPREF9321_0955 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515017|gb|EFL56994.1| hypothetical protein HMPREF9321_0955 [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 951

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           D+ + I H S+G    V + + LA A++ S      PI +LD+I    DED++ +   ++
Sbjct: 857 DERLPIYHWSSGLADQVYLALRLALAKVFSYQVDALPI-ILDDILVRFDEDRQKSALELL 915

Query: 339 TDIG--SQIFMTGTDKSVF 355
            ++G   QI++    + V+
Sbjct: 916 AELGEHQQIWLFTCQQQVY 934


>gi|168181360|ref|ZP_02616024.1| acyl-coA dehydrogenase [Clostridium botulinum Bf]
 gi|182675483|gb|EDT87444.1| acyl-coA dehydrogenase [Clostridium botulinum Bf]
          Length = 645

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M N I +K L+I  F+    L L F     IF GDNG GKT + ++ +FL   +  + ++
Sbjct: 1  MVNSIFLKNLSIKNFKGIKDLNLDFGKATNIF-GDNGTGKTTVQDSFTFLLFDKDSKDST 59

Query: 61 YADV 64
            DV
Sbjct: 60 KFDV 63


>gi|84489889|ref|YP_448121.1| DNA double-strand break repair protein Rad50 [Methanosphaera
          stadtmanae DSM 3091]
 gi|84373208|gb|ABC57478.1| DNA double-strand break repair protein Rad50 [Methanosphaera
          stadtmanae DSM 3091]
          Length = 902

 Score = 37.4 bits (85), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 30/43 (69%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          I  + ++ F+++ S ++ F    ++ +G+NG GK++ILEAIS+
Sbjct: 3  INNIELTNFKSHKSTKIEFKKGISLILGENGAGKSSILEAISY 45


>gi|296242551|ref|YP_003650038.1| SMC domain-containing protein [Thermosphaera aggregans DSM 11486]
 gi|296095135|gb|ADG91086.1| SMC domain protein [Thermosphaera aggregans DSM 11486]
          Length = 937

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          F ++    +VF+      VG NG GK++ILEAI +   G G+R
Sbjct: 16 FLSHGETSIVFEKGVNTIVGPNGAGKSSILEAIYYALTGDGWR 58


>gi|163847460|ref|YP_001635504.1| AAA ATPase [Chloroflexus aurantiacus J-10-fl]
 gi|222525311|ref|YP_002569782.1| AAA ATPase [Chloroflexus sp. Y-400-fl]
 gi|163668749|gb|ABY35115.1| AAA ATPase [Chloroflexus aurantiacus J-10-fl]
 gi|222449190|gb|ACM53456.1| AAA ATPase [Chloroflexus sp. Y-400-fl]
          Length = 570

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 15/86 (17%)

Query: 268 PHRSDLIVDYCDKAIT---IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
           P R ++++DY  ++ T   I+    G+Q+ +L    LAH  +         ILLLDE  A
Sbjct: 232 PERGEIVMDYSTRSGTTLDISSSGRGQQQTLL---LLAHMAVHPGA-----ILLLDEPDA 283

Query: 325 HLDEDKRNALFRIVTD----IGSQIF 346
           HL+  ++  ++ +++D    +GSQI 
Sbjct: 284 HLEILRQRQIYTVLSDQAEKMGSQII 309


>gi|295425227|ref|ZP_06817930.1| DNA repair protein RecN [Lactobacillus amylolyticus DSM 11664]
 gi|295065003|gb|EFG55908.1| DNA repair protein RecN [Lactobacillus amylolyticus DSM 11664]
          Length = 562

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          L+I  F    +L++ F    T+ +G+ G GK+ +++A+S L  GRG + 
Sbjct: 5  LDIKNFAIIKALKVRFQEHMTVLIGETGAGKSILIDAVSLLMGGRGQKE 53


>gi|229006502|ref|ZP_04164148.1| DNA repair protein recN [Bacillus mycoides Rock1-4]
 gi|228754747|gb|EEM04146.1| DNA repair protein recN [Bacillus mycoides Rock1-4]
          Length = 447

 Score = 37.4 bits (85), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 13/71 (18%)

Query: 15 FRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           RN+A   SL + F    T+  G+ G GK+ I++AIS L  GRG      A+  R G+  
Sbjct: 11 IRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVRYGTEK 65

Query: 72 FFSTFARVEGM 82
               A +EG+
Sbjct: 66 -----AEIEGL 71


>gi|291524427|emb|CBK90014.1| Predicted ATP-binding protein involved in virulence [Eubacterium
          rectale DSM 17629]
 gi|291527555|emb|CBK93141.1| Predicted ATP-binding protein involved in virulence [Eubacterium
          rectale M104/1]
          Length = 457

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          KI+ L +  +R + + + V + +  +F G NG GKT++LEA + +
Sbjct: 5  KIQELGLRNYRGFDNKKFVLNPRMNVFAGKNGSGKTSVLEAANVM 49


>gi|225620807|ref|YP_002722065.1| chromosome partition protein SmC [Brachyspira hyodysenteriae WA1]
 gi|225215627|gb|ACN84361.1| chromosome partition protein SmC [Brachyspira hyodysenteriae WA1]
          Length = 952

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           IK LN+  F+++A    + F+   T+ +G NG+GK+NI+EA  ++   +   R       
Sbjct: 3   IKNLNLHGFKSFAIETNIEFNEGVTVVLGPNGIGKSNIVEAFLWVMGEQSASRLRIDSAK 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            + S  F  T  R      LA +++ L+ +  R ++   I++V++
Sbjct: 63  GLESVIFHGTDTRKPS--SLAQVALTLDNK-SRWIKKYDIDEVIV 104


>gi|205372121|ref|ZP_03224937.1| ATP-dependent OLD family endonuclease [Bacillus coahuilensis m4-4]
          Length = 479

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 74/378 (19%), Positives = 138/378 (36%), Gaps = 80/378 (21%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           I+IK L I  FR+Y S  +   + + + +G N VGKT +L+AI          + ++   
Sbjct: 3   IRIKELRIRNFRSYKSADIDL-SDNCVLIGANNVGKTTLLQAI----------QVAFVRG 51

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV---------------- 108
           TR+GS   +         +  A I + +   D+++   ++  D                 
Sbjct: 52  TRVGSDDIYINNGESLPKDRKAIIDLLIVPTDEQNNEVMEFEDKWFEHFGDLRSENPTDL 111

Query: 109 -------------VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
                        +++   ++ K   I W  P  + + S     R R  DR++ +I   +
Sbjct: 112 GQFFAMRTVIAFDIVKGEYQVEKKALIEW--PKTEEVESYSKYNRNRITDRVLQSIPIFY 169

Query: 156 RRRMIDFERLMRGR----NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
                D    M+ R     +L+ +   D      IE  + E+   I I R  ++N L+  
Sbjct: 170 MDAKRDIASEMKDRYSYWGKLVKDVGLDEGEIEKIEGVLDEINDTI-IERSSVLNHLTKY 228

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           +            K+S T              KEE  K     RK+  ++R   I     
Sbjct: 229 LS-----------KISKT-----------VNTKEESIKINPVSRKIRDLNRGIDI----- 261

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH-----ARLISNTTGFAPILLLDEISAHL 326
               D   ++  I++   G +  +     +A+      ++      + P++LL+E  AHL
Sbjct: 262 -TFKDQDSESFPISNHGMGTRSWITFLTLVAYIAWKNKQMKDEEIPYHPLILLEEPEAHL 320

Query: 327 DEDKRNALFRIVTDIGSQ 344
               +  +F  +  I  Q
Sbjct: 321 HPQAQRKIFNQINGIAGQ 338


>gi|149031309|gb|EDL86307.1| structural maintenance of chromosomes 1 like 1 (S. cerevisiae),
          isoform CRA_a [Rattus norvegicus]
          Length = 1001

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50
          +K + I  F++Y   +++   Q  T  +G NG GK+N+++AISF+
Sbjct: 4  LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48


>gi|123967606|ref|YP_001008464.1| SMC ATPase superfamily chromosome segregation protein
           [Prochlorococcus marinus str. AS9601]
 gi|123197716|gb|ABM69357.1| putative chromosome segregation protein, SMC ATPase superfamily
           [Prochlorococcus marinus str. AS9601]
          Length = 1196

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 17/133 (12%)

Query: 10  LNISEFRNYAS----LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62
           +N  EF N+ S    +++  +   T+  G NG GK+NIL+ I F   L+  RG R     
Sbjct: 6   INQVEFENFKSFGGNVKIPLEEGFTVVTGPNGSGKSNILDGILFCLGLANSRGMR----- 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              R+  P   +     EG      +S+K   + D S R       +      LNK  + 
Sbjct: 61  -AERL--PDLINNSKVKEGKSSETSVSVKFNIQ-DWSPREDLPPLELEEEEIALNKGQK- 115

Query: 123 SWLVPSMDRIFSG 135
            WLV    R+  G
Sbjct: 116 EWLVSRKLRLMPG 128


>gi|296273057|ref|YP_003655688.1| SMC domain-containing protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097231|gb|ADG93181.1| SMC domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 789

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          L +  F+ Y +  L FD      +G NG GK+ I EAI F   G  F+   Y ++ R
Sbjct: 6  LKLENFKRYKTFELDFDEGLVGIIGKNGSGKSTIFEAILFALYGE-FKDRGYKEIVR 61


>gi|254435753|ref|ZP_05049260.1| hypothetical protein NOC27_2816 [Nitrosococcus oceani AFC27]
 gi|207088864|gb|EDZ66136.1| hypothetical protein NOC27_2816 [Nitrosococcus oceani AFC27]
          Length = 168

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI  L +  FR Y+++ + FD    + +G N VGK+ ILEA+
Sbjct: 1  MKISSLTLKNFRAYSNVFVKFDDNFNVIIGRNDVGKSTILEAL 43


>gi|158257274|dbj|BAF84610.1| unnamed protein product [Homo sapiens]
          Length = 842

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50
          +K + I  F++Y   +++   Q  T  +G NG GK+N+++AISF+
Sbjct: 4  LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48


>gi|39963673|gb|AAH64368.1| SMC1A protein [Homo sapiens]
          Length = 847

 Score = 37.4 bits (85), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50
          +K + I  F++Y   +++   Q  T  +G NG GK+N+++AISF+
Sbjct: 4  LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48


>gi|56460803|ref|YP_156084.1| chromosome segregation ATPase, sms [Idiomarina loihiensis L2TR]
 gi|56179813|gb|AAV82535.1| Chromosome segregation ATPase, sms [Idiomarina loihiensis L2TR]
          Length = 1152

 Score = 37.4 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 18/113 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + +  F+++    ++ F  Q T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLKHIKLVGFKSFVDPTKVPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEG-MEGLADISIK-LETRDDRS 99
            +DV   GS +            F ++  R++G      +IS+K L TRD +S
Sbjct: 61  MSDVIFNGSSARKPVSQASVELVFDNSSGRIQGEYAAFNEISVKRLVTRDGQS 113


>gi|314998044|ref|ZP_07862932.1| DNA repair protein RecN [Enterococcus faecium TX0133a01]
 gi|313587886|gb|EFR66731.1| DNA repair protein RecN [Enterococcus faecium TX0133a01]
          Length = 562

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2  LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56

Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97
           G+          +   EG +++ ++L  ET +D
Sbjct: 57 QGAEKCVLEGLFELPKQEGFSELMVELGIETDED 90


>gi|297618563|ref|YP_003706668.1| SMC domain-containing protein [Methanococcus voltae A3]
 gi|297618623|ref|YP_003706728.1| SMC domain-containing protein [Methanococcus voltae A3]
 gi|297377540|gb|ADI35695.1| SMC domain protein [Methanococcus voltae A3]
 gi|297377600|gb|ADI35755.1| SMC domain protein [Methanococcus voltae A3]
          Length = 1113

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 272  DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
            DLIVD     I +++ S GEQ  V + + L  A  I +       ++LDE +A+LDED+R
Sbjct: 1011 DLIVD----GIPVSNMSGGEQVAVALALRLGIANAICDN---MECIILDEPTAYLDEDRR 1063

Query: 332  NALFRIVTDI 341
              L  I + I
Sbjct: 1064 RNLLTIFSSI 1073


>gi|257879358|ref|ZP_05659011.1| DNA repair protein RecN [Enterococcus faecium 1,230,933]
 gi|257881776|ref|ZP_05661429.1| DNA repair protein RecN [Enterococcus faecium 1,231,502]
 gi|257885170|ref|ZP_05664823.1| DNA repair protein RecN [Enterococcus faecium 1,231,501]
 gi|257890184|ref|ZP_05669837.1| DNA repair protein RecN [Enterococcus faecium 1,231,410]
 gi|257893512|ref|ZP_05673165.1| DNA repair protein RecN [Enterococcus faecium 1,231,408]
 gi|260558800|ref|ZP_05830989.1| DNA repair protein RecN [Enterococcus faecium C68]
 gi|261206510|ref|ZP_05921210.1| DNA repair protein RecN [Enterococcus faecium TC 6]
 gi|257813586|gb|EEV42344.1| DNA repair protein RecN [Enterococcus faecium 1,230,933]
 gi|257817434|gb|EEV44762.1| DNA repair protein RecN [Enterococcus faecium 1,231,502]
 gi|257821022|gb|EEV48156.1| DNA repair protein RecN [Enterococcus faecium 1,231,501]
 gi|257826544|gb|EEV53170.1| DNA repair protein RecN [Enterococcus faecium 1,231,410]
 gi|257829891|gb|EEV56498.1| DNA repair protein RecN [Enterococcus faecium 1,231,408]
 gi|260075259|gb|EEW63572.1| DNA repair protein RecN [Enterococcus faecium C68]
 gi|260079220|gb|EEW66911.1| DNA repair protein RecN [Enterococcus faecium TC 6]
          Length = 561

 Score = 37.4 bits (85), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 3  LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 57

Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97
           G+          +   EG +++ ++L  ET +D
Sbjct: 58 QGAEKCVLEGLFELPKQEGFSELMVELGIETDED 91


>gi|213402735|ref|XP_002172140.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212000187|gb|EEB05847.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 1331

 Score = 37.4 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 5/57 (8%)

Query: 3   NRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           +R+ ++ L +  F++YA  +++  FD   +  VG NG GK+N+++A+ F+    GFR
Sbjct: 131 SRLVVRELRLHNFKSYAGTQIIGPFDYSFSAIVGPNGSGKSNVIDALLFVF---GFR 184


>gi|320534862|ref|ZP_08035279.1| RecF/RecN/SMC protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320132960|gb|EFW25491.1| RecF/RecN/SMC protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 395

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          + +K L I  F+++AS   L  +   T  VG NG GK+N+++A++++   +G    R  S
Sbjct: 1  MHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGAKNLRGGS 60

Query: 61 YADVTRIGSPS 71
           ADV   G+ S
Sbjct: 61 MADVIFAGAGS 71


>gi|154508959|ref|ZP_02044601.1| hypothetical protein ACTODO_01475 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798593|gb|EDN81013.1| hypothetical protein ACTODO_01475 [Actinomyces odontolyticus ATCC
           17982]
          Length = 1191

 Score = 37.4 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 25/174 (14%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
           +K L +  F+++AS   L  +   T  VG NG GK+N+++A++++      R  R    A
Sbjct: 3   LKNLTLRGFKSFASATTLALEPGITCVVGPNGSGKSNVVDALAWVMGEQGARALRGGQMA 62

Query: 63  DVTRIGSPSFFSTFAR------VEGMEGLADISIKLETRDDRSVRC----LQINDVVIRV 112
           DV   G+ S  +   R      ++  +GL DI     T      R       IN    R+
Sbjct: 63  DVIFAGT-SGRAALGRAQVDLTIDNTDGLLDIEYSEVTISRTLFRGGGSEYSINGTPARL 121

Query: 113 VD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
           +D         + + + +      +D I S    ERR F++     +  +HRRR
Sbjct: 122 LDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEPAGVL--KHRRR 173


>gi|261417074|ref|YP_003250757.1| SMC domain protein [Fibrobacter succinogenes subsp. succinogenes
          S85]
 gi|261373530|gb|ACX76275.1| SMC domain protein [Fibrobacter succinogenes subsp. succinogenes
          S85]
 gi|302326883|gb|ADL26084.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
          succinogenes S85]
          Length = 427

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 13/89 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL---------SP-G 53
          +++K L I  FR   +L L F +++  +F G NG GKT +L A+ FL         SP G
Sbjct: 1  MRVKKLRIENFRGIKNLDLDFSNSKMVVFAGINGAGKTTVLVAMQFLFSWYVARLKSPKG 60

Query: 54 RGFRRASYADVTRIGSPSFFSTFARVEGM 82
          +G    S  D+T  G P  F     VE +
Sbjct: 61 KGL-SLSDCDITN-GEPYAFIEIEVVEKI 87


>gi|239906239|ref|YP_002952979.1| putative ABC transporter ATP-binding protein [Desulfovibrio
           magneticus RS-1]
 gi|239796104|dbj|BAH75093.1| putative ABC transporter ATP-binding protein [Desulfovibrio
           magneticus RS-1]
          Length = 666

 Score = 37.0 bits (84), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 13/78 (16%)

Query: 276 DYCDKAITIAHGSTGEQ-KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           DY D+ +    G  GE+ ++VL G+F A A            L+LDE + HLD + R AL
Sbjct: 438 DYWDRRVFELSG--GEKSRLVLAGLFSARANF----------LVLDEPTNHLDLESREAL 485

Query: 335 FRIVTDIGSQIFMTGTDK 352
            R + +    I M   D+
Sbjct: 486 VRALAEYSGTILMVAHDR 503


>gi|226326917|ref|ZP_03802435.1| hypothetical protein PROPEN_00777 [Proteus penneri ATCC 35198]
 gi|225204754|gb|EEG87108.1| hypothetical protein PROPEN_00777 [Proteus penneri ATCC 35198]
          Length = 185

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317
           D M   T +G H++DL +      +     S G+ K+++  + LA     +   G   + 
Sbjct: 67  DKMLAYTSLGAHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQGEYFTRKNGQRCLY 125

Query: 318 LLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRIS 368
           LLD+ ++ LD  +R  L   +    +Q+F++  T   V D L+  ++   + 
Sbjct: 126 LLDDFASELDASRRQLLAERLKSTQAQVFVSAITQGQVKDMLDVNSRLFSVE 177


>gi|148652279|ref|YP_001279372.1| SMC domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148571363|gb|ABQ93422.1| condensin subunit Smc [Psychrobacter sp. PRwf-1]
          Length = 1280

 Score = 37.0 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 15/101 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
          +++K L +S F+++A+    F  +H  T  VG NG GK+N+++AI ++   S  +  R  
Sbjct: 1  MRLKSLKLSGFKSFAN-PTTFSFRHGITAIVGPNGCGKSNVIDAIRWVLGESSAKQLRGG 59

Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRS 99
          + +DV   G+ +        +  + LA + +  E T+D+++
Sbjct: 60 AMSDVIFAGTQN--------KAAKSLASVELTFEHTQDEQT 92


>gi|284036391|ref|YP_003386321.1| ATPase [Spirosoma linguale DSM 74]
 gi|283815684|gb|ADB37522.1| ATPase-like protein [Spirosoma linguale DSM 74]
          Length = 426

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 9   FLNISEFRNYASLR-LVFDAQH-TIFVGDNGVGKTNILEAISFLSPG 53
           FLN  E +N+ S++ L  D +   +F+G   VGK+NILEA+  L  G
Sbjct: 64  FLNWVEIKNFKSIKDLRLDCKRVNVFIGKPNVGKSNILEALGLLGAG 110


>gi|190574391|ref|YP_001972236.1| putative conjugative transposon DNA recombination protein
          [Stenotrophomonas maltophilia K279a]
 gi|190012313|emb|CAQ45939.1| putative conjugative transposon DNA recombination protein
          [Stenotrophomonas maltophilia K279a]
          Length = 526

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + I+ + I  F+++  L L  +A   + VGDN VGK+ +LEAI  +  G+   R    ++
Sbjct: 1  MPIERIVIDNFKSFRHLDLPLNAHMNLVVGDNEVGKSTLLEAIHAVVTGQLHGRNLAYEL 60

Query: 65 TR 66
          TR
Sbjct: 61 TR 62


>gi|123504794|ref|XP_001328834.1| SMC family, C-terminal domain containing protein [Trichomonas
          vaginalis G3]
 gi|121911782|gb|EAY16611.1| SMC family, C-terminal domain containing protein [Trichomonas
          vaginalis G3]
          Length = 1202

 Score = 37.0 bits (84), Expect = 4.5,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 4  RIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          R+ IK + +  F++YA L+ +  F    T  VG NG GK+N+++A+ F+
Sbjct: 7  RLIIKSIQVENFKSYAGLKDIGPFHPSFTSIVGPNGSGKSNVIDAMLFV 55


>gi|117619753|ref|YP_855768.1| chromosome segregation protein SMC [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
 gi|117561160|gb|ABK38108.1| chromosome segregation protein SMC [Aeromonas hydrophila subsp.
          hydrophila ATCC 7966]
          Length = 1124

 Score = 37.0 bits (84), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++K + ++ F+++    R+  +A  T  VG NG GK+N+++A+ ++   S  R  R  +
Sbjct: 1  MRLKLIKLAGFKSFVEPTRIELNADMTAVVGPNGCGKSNVIDAVRWVLGESSARHLRGEN 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MTDVIFNGS 69


>gi|293568309|ref|ZP_06679633.1| DNA repair protein RecN [Enterococcus faecium E1071]
 gi|291589021|gb|EFF20845.1| DNA repair protein RecN [Enterococcus faecium E1071]
          Length = 560

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2  LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56

Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97
           G+          +   EG +++ ++L  ET +D
Sbjct: 57 QGAEKCVLEGLFELPKQEGFSELMVELGIETDED 90


>gi|69244722|ref|ZP_00602986.1| DNA repair protein RecN [Enterococcus faecium DO]
 gi|258615764|ref|ZP_05713534.1| DNA repair protein RecN [Enterococcus faecium DO]
 gi|289565420|ref|ZP_06445869.1| DNA repair protein RecN [Enterococcus faecium D344SRF]
 gi|293553176|ref|ZP_06673813.1| DNA repair protein RecN [Enterococcus faecium E1039]
 gi|293560483|ref|ZP_06676975.1| DNA repair protein RecN [Enterococcus faecium E1162]
 gi|294614720|ref|ZP_06694622.1| DNA repair protein RecN [Enterococcus faecium E1636]
 gi|294618982|ref|ZP_06698477.1| DNA repair protein RecN [Enterococcus faecium E1679]
 gi|294621594|ref|ZP_06700759.1| DNA repair protein RecN [Enterococcus faecium U0317]
 gi|314937880|ref|ZP_07845196.1| DNA repair protein RecN [Enterococcus faecium TX0133a04]
 gi|314941371|ref|ZP_07848264.1| DNA repair protein RecN [Enterococcus faecium TX0133C]
 gi|314950130|ref|ZP_07853416.1| DNA repair protein RecN [Enterococcus faecium TX0082]
 gi|314951329|ref|ZP_07854383.1| DNA repair protein RecN [Enterococcus faecium TX0133A]
 gi|314992840|ref|ZP_07858241.1| DNA repair protein RecN [Enterococcus faecium TX0133B]
 gi|68196313|gb|EAN10742.1| DNA repair protein RecN [Enterococcus faecium DO]
 gi|289162749|gb|EFD10600.1| DNA repair protein RecN [Enterococcus faecium D344SRF]
 gi|291592458|gb|EFF24065.1| DNA repair protein RecN [Enterococcus faecium E1636]
 gi|291594643|gb|EFF26025.1| DNA repair protein RecN [Enterococcus faecium E1679]
 gi|291598759|gb|EFF29811.1| DNA repair protein RecN [Enterococcus faecium U0317]
 gi|291602586|gb|EFF32801.1| DNA repair protein RecN [Enterococcus faecium E1039]
 gi|291605631|gb|EFF35073.1| DNA repair protein RecN [Enterococcus faecium E1162]
 gi|313592644|gb|EFR71489.1| DNA repair protein RecN [Enterococcus faecium TX0133B]
 gi|313596546|gb|EFR75391.1| DNA repair protein RecN [Enterococcus faecium TX0133A]
 gi|313599794|gb|EFR78637.1| DNA repair protein RecN [Enterococcus faecium TX0133C]
 gi|313642738|gb|EFS07318.1| DNA repair protein RecN [Enterococcus faecium TX0133a04]
 gi|313643571|gb|EFS08151.1| DNA repair protein RecN [Enterococcus faecium TX0082]
          Length = 560

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2  LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56

Query: 67 IGSPS-FFSTFARVEGMEGLADISIKL--ETRDD 97
           G+          +   EG +++ ++L  ET +D
Sbjct: 57 QGAEKCVLEGLFELPKQEGFSELMVELGIETDED 90


>gi|91202091|emb|CAJ75151.1| hypothetical protein kuste4389 [Candidatus Kuenenia
          stuttgartiensis]
          Length = 574

 Score = 37.0 bits (84), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA 59
          +K+  + I  FR   SL L  D   T+ +G+N  GK+ +LEAI   L+ G G RR 
Sbjct: 1  MKLIEIKIENFRGVRSLHLPLDGL-TVLIGENNTGKSTVLEAIRLVLTRGFGVRRG 55


>gi|186914887|gb|ACC95210.1| ABC transporter [uncultured bacterium]
          Length = 191

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 5   IKIKFLNISEFRNYASLR----LVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRA 59
           +++  L++S F   A+LR     V +   T  +G NG GKT++  +IS F  P RG  R 
Sbjct: 40  LEVDSLHLS-FGGVAALRDVSFQVPEGSITTVIGPNGAGKTSLFNSISGFYKPQRGTIRY 98

Query: 60  SYADVTRIGSP 70
             AD++R+  P
Sbjct: 99  RGADISRLSPP 109


>gi|295110067|emb|CBL24020.1| hypothetical protein [Ruminococcus obeum A2-162]
          Length = 190

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYADVT 65
          I+ +RN     + F+      +G+N +GKTNILE I+  L+ G+ F    + D+T
Sbjct: 9  INNYRNLTGKTITFNDTLNFLIGENNIGKTNILELINICLAIGK-FAETDFMDIT 62


>gi|300869835|ref|YP_003784706.1| hypothetical protein BP951000_0198 [Brachyspira pilosicoli 95/1000]
 gi|300687534|gb|ADK30205.1| hypothetical ABC transporter ATP binding protein [Brachyspira
           pilosicoli 95/1000]
          Length = 603

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%)

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           VL G  +A   L+   T  A +L+LDE + HLD +   AL   + D G  IF T  D++ 
Sbjct: 402 VLSGGEMARLSLLCAITQCADVLILDEPTNHLDFETVEALANSLRDYGGTIFFTSHDRTF 461

Query: 355 FDSLNET 361
              L +T
Sbjct: 462 ASLLADT 468


>gi|300866185|ref|ZP_07110902.1| Exonuclease SbcC [Oscillatoria sp. PCC 6506]
 gi|300335819|emb|CBN56062.1| Exonuclease SbcC [Oscillatoria sp. PCC 6506]
          Length = 1044

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
          L +  F +Y    L F   HT  + G NG GKT++LEAI++   G   R AS  D+  IG
Sbjct: 6  LTLKNFLSYRDATLDFRGLHTACICGPNGAGKTSLLEAIAWAIWG-NCRTASEDDIIHIG 64


>gi|218246354|ref|YP_002371725.1| ATPase-like protein [Cyanothece sp. PCC 8801]
 gi|218166832|gb|ACK65569.1| ATPase-like protein [Cyanothece sp. PCC 8801]
          Length = 131

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 13/93 (13%)

Query: 11  NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70
           NI  F++   + L F    TI VG N  GK+N LEA++FLS           ++ + G+P
Sbjct: 9   NIQNFKSLGDVTLNF-RDLTILVGANSSGKSNCLEALNFLS-----------EIVKEGTP 56

Query: 71  SFFS-TFARVEGMEGLADISIKLETRDDRSVRC 102
              S T  ++  ++    I+I +  +DD   + 
Sbjct: 57  PSDSDTIKKILKIDANTGINIAITIQDDNEKKA 89


>gi|77166477|ref|YP_345002.1| hypothetical protein Noc_3031 [Nitrosococcus oceani ATCC 19707]
 gi|254435139|ref|ZP_05048646.1| hypothetical protein NOC27_2202 [Nitrosococcus oceani AFC27]
 gi|76884791|gb|ABA59472.1| hypothetical protein Noc_3031 [Nitrosococcus oceani ATCC 19707]
 gi|207088250|gb|EDZ65522.1| hypothetical protein NOC27_2202 [Nitrosococcus oceani AFC27]
          Length = 70

 Score = 37.0 bits (84), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAI 47
          +++K L I +++N     L FD    I  FVG NG GK+N+ EA+
Sbjct: 1  MRLKSLYIGQYKNLLDFSLSFDGSSFIDVFVGKNGTGKSNLFEAL 45


>gi|241894937|ref|ZP_04782233.1| DNA repair and genetic recombination protein [Weissella
          paramesenteroides ATCC 33313]
 gi|241871655|gb|EER75406.1| DNA repair and genetic recombination protein [Weissella
          paramesenteroides ATCC 33313]
          Length = 563

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I  F     L + F+   T+  G+ G GK+ I++A+  L+ GRG +     D  R
Sbjct: 2  LQELSIQNFAIIPKLNISFEPGMTVLTGETGAGKSIIIDAVGLLTGGRGSQ-----DYIR 56

Query: 67 IGS-PSFFSTFARVEGMEGLA----DISIKLE 93
           G+  +       VE    L+    D+ IKLE
Sbjct: 57 EGTDTAVLQGLIDVEPNTALSAILDDLGIKLE 88


>gi|15615339|ref|NP_243642.1| DNA repair and genetic recombination [Bacillus halodurans C-125]
 gi|11134697|sp|Q9K974|RECN_BACHD RecName: Full=DNA repair protein recN; AltName:
          Full=Recombination protein N
 gi|10175397|dbj|BAB06495.1| DNA repair and genetic recombination [Bacillus halodurans C-125]
          Length = 565

 Score = 37.0 bits (84), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 10/73 (13%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I +F     L + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R G 
Sbjct: 5  LSIKQFAIIEQLTVSFDKGLTVLTGETGAGKSIIIDAIGLLLGGRG-----SAEYVRYGE 59

Query: 70 PSFFSTFARVEGM 82
                 A +EG+
Sbjct: 60 KR-----AEIEGL 67


>gi|168029501|ref|XP_001767264.1| condensin complex component SMC1 [Physcomitrella patens subsp.
          patens]
 gi|162681519|gb|EDQ67945.1| condensin complex component SMC1 [Physcomitrella patens subsp.
          patens]
          Length = 1247

 Score = 37.0 bits (84), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50
          N  +I+ L I  F++Y   ++V   ++ T  +G NG GK+N+++AISF+
Sbjct: 6  NPGRIERLEIENFKSYKGHQIVGPFKNFTAIIGPNGAGKSNLMDAISFV 54


>gi|195165821|ref|XP_002023737.1| GL19756 [Drosophila persimilis]
 gi|194105871|gb|EDW27914.1| GL19756 [Drosophila persimilis]
          Length = 232

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 7  IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I  F++Y    +V  FD +H + VG NG GK+N   AI F+
Sbjct: 3  IKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFV 48


>gi|116492590|ref|YP_804325.1| DNA repair ATPase [Pediococcus pentosaceus ATCC 25745]
 gi|116102740|gb|ABJ67883.1| DNA replication and repair protein RecN [Pediococcus pentosaceus
          ATCC 25745]
          Length = 558

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I +F     L + F+   T+  G+ G GK+ I++A+  L+ GRG      AD  R G+
Sbjct: 5  LSIKDFAIIEKLDVSFNQGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SADFVRTGA 59


>gi|167767258|ref|ZP_02439311.1| hypothetical protein CLOSS21_01777 [Clostridium sp. SS2/1]
 gi|167711233|gb|EDS21812.1| hypothetical protein CLOSS21_01777 [Clostridium sp. SS2/1]
 gi|291559431|emb|CBL38231.1| hypothetical protein CL2_12570 [butyrate-producing bacterium
          SSC/2]
          Length = 517

 Score = 37.0 bits (84), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63
          +KI  + I  FR Y     +     T+ VG N +GK+ ILEA+  F + G+G  +    D
Sbjct: 1  MKIDSMKIKNFRGYKDETEIKLNDLTVLVGKNDIGKSTILEALDIFFNDGKGVIKLDKTD 60

Query: 64 VT 65
          V 
Sbjct: 61 VN 62


>gi|332638234|ref|ZP_08417097.1| Barmotin [Weissella cibaria KACC 11862]
          Length = 1185

 Score = 37.0 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 37/170 (21%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K+K L IS F+++A   ++ F    T  VG NG GK+NI+EAI ++      +G R   
Sbjct: 1   MKLKTLEISGFKSFADRTKIEFMPGITGVVGPNGSGKSNIIEAIRWVMGEQSAKGLRGDK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD---------RSVRCL-------- 103
            +DV   G  S  +   R       A++SI  +  D          R  R L        
Sbjct: 61  MSDVI-FGGTSQRAPLNR-------AEVSITFDNTDRYLNSDYSEIRITRALYRNGDSKY 112

Query: 104 QINDVVIRVVDELNKHL-----RISWLVPSMDR---IFSGLSMERRRFLD 145
           QIN   +R+ D     +     R S+ + S  R   IFS    ERR  ++
Sbjct: 113 QINGTTVRLKDIHELFMDSGLGRESFSIISQGRVESIFSAKPEERRSIIE 162


>gi|330978667|gb|EGH77948.1| SMC domain-containing protein [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 576

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 14 EFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL 50
          +F+N  ++ + FD  H  T+ +G NG GK+N+LEA++ +
Sbjct: 18 QFKNLKNVTIDFDQDHWVTVVIGWNGTGKSNVLEALAII 56


>gi|328956989|ref|YP_004374375.1| factor for double strand breaks DNA repair and genetic
          recombination [Carnobacterium sp. 17-4]
 gi|328673313|gb|AEB29359.1| factor for double strand breaks DNA repair and genetic
          recombination [Carnobacterium sp. 17-4]
          Length = 572

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 28/49 (57%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L I +F     L L F+   T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELTIKDFAIIQDLNLSFNRGMTVLTGETGAGKSIIIDAVGLLAGGRG 50


>gi|284923721|emb|CBG36818.1| putative prophage ATP/GTP binding protein [Escherichia coli 042]
          Length = 478

 Score = 37.0 bits (84), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 27/43 (62%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          I++K  +I +   Y  + L+F+ + TI + +NG GKT ++ A+
Sbjct: 3  IELKKFSIKKLYGYKDIHLIFNKKSTIIIAENGAGKTTLINAL 45


>gi|295687767|ref|YP_003591460.1| ABC transporter-like protein [Caulobacter segnis ATCC 21756]
 gi|295429670|gb|ADG08842.1| ABC transporter related protein [Caulobacter segnis ATCC 21756]
          Length = 308

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 114/272 (41%), Gaps = 52/272 (19%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLV-FDAQH-TIF--VGDNGVGKTNILEAI-SFLSPGRG 55
           MT+ I +K LN +    + +L+ +  D +   IF  +G NG GKT ++  I   ++P +G
Sbjct: 1   MTSIISVKGLNKTYASGHQALKTIDLDIRRGEIFALLGPNGAGKTTLISIICGIVNPSQG 60

Query: 56  FRRASYADV--------TRIG-------SPSFFSTFARVEGMEGLADISIKLETRDD--- 97
              A   DV        T+IG       + +F S +A V    GL       + R+D   
Sbjct: 61  TVTADGHDVVRDYRAARTKIGLVPQELHTDAFESVWATVSFSRGLFG-----KPRNDALI 115

Query: 98  -RSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR---IFSGLSMERR-RFLDRMVFAID 152
            + +R L + D          K  +I  L   M R   I   LS E    FLD     +D
Sbjct: 116 EKILRELSLWD---------KKDSKIMALSGGMKRRVMIAKALSHEPTILFLDEPTAGVD 166

Query: 153 PRHRRRMIDFERLMR--GRNRLLTEGYFDSSWCSSIEAQMAE-LGVKINIARVEMINALS 209
              RR M +  R +R  G   +LT  Y + +       +MA+ +GV IN   + ++   +
Sbjct: 167 VELRRDMWEMVRKLRESGVTIILTTHYIEEA------EEMADRIGV-INKGEIILVEDKT 219

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
            L+ +  +K+   H+K  LT    G  D    
Sbjct: 220 VLMRKLGKKQLTVHLKEPLTALPAGLVDPHLT 251


>gi|51327185|gb|AAH80185.1| SMC1A protein [Homo sapiens]
          Length = 417

 Score = 37.0 bits (84), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50
          +K + I  F++Y   +++   Q  T  +G NG GK+N+++AISF+
Sbjct: 4  LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48


>gi|162452485|ref|YP_001614852.1| hypothetical protein sce4209 [Sorangium cellulosum 'So ce 56']
 gi|161163067|emb|CAN94372.1| hypothetical protein sce4209 [Sorangium cellulosum 'So ce 56']
          Length = 418

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 3/109 (2%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASY 61
           +K++ L I +FR  A    L F     + +G NG GKT +LE IS +  S      R  +
Sbjct: 2   LKLRRLRIEKFRGVAPGTELRFSDGLNVLLGQNGTGKTTLLELISMVVRSDFSSLAREEF 61

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           A    +  P   +    V   E    +  K   R D   R   + DV I
Sbjct: 62  AVEYELAVPEEATVTVAVSNKEKTGFVGTKDRPRIDLPERWFPVADVTI 110


>gi|327438874|dbj|BAK15239.1| predicted ATP-dependent endonuclease of the OLD family
          [Solibacillus silvestris StLB046]
          Length = 537

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K L I  ++ +    L FD   +I +G+NG GK+ +LEAI
Sbjct: 3  LKKLKIYNYKKFEDFSLDFDNNFSIMIGNNGAGKSTLLEAI 43


>gi|260587864|ref|ZP_05853777.1| ABC transporter, ATP-binding protein [Blautia hansenii DSM 20583]
 gi|260542129|gb|EEX22698.1| ABC transporter, ATP-binding protein [Blautia hansenii DSM 20583]
          Length = 242

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 24/114 (21%)

Query: 11  NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS---YADV 64
           NIS  RN   L   F++  T F G+NG GK+ +LEAI+     +P  G +  S   Y DV
Sbjct: 25  NISVLRNLKHLE--FNSNITFFAGENGSGKSTLLEAIAVAYGFNPEGGTKNYSFETYHDV 82

Query: 65  TRIGSPSFFST-FARVEG-----MEGLADISIKLETRD----------DRSVRC 102
           + +    + S  F + E       E   +++ K E  D           RS+ C
Sbjct: 83  SELSEAIYISKGFKKPESGYFFRAESFFNVATKAEEYDAFNPNGPSYGGRSLHC 136


>gi|53713065|ref|YP_099057.1| hypothetical protein BF1776 [Bacteroides fragilis YCH46]
 gi|52215930|dbj|BAD48523.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 515

 Score = 37.0 bits (84), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYADVT 65
          I+ + +  FR Y +   V  +  T FVG N +GK+ ILEA+  F + G+G       D+ 
Sbjct: 3  IRSVTLKNFRGYRNETTVLFSNLTTFVGRNDIGKSTILEALDIFFNEGKGCISLDKEDIN 62

Query: 66 RIGS 69
          +  S
Sbjct: 63 KRAS 66


>gi|218245499|ref|YP_002370870.1| SMC domain-containing protein [Cyanothece sp. PCC 8801]
 gi|218165977|gb|ACK64714.1| SMC domain protein [Cyanothece sp. PCC 8801]
          Length = 439

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +KI  L +  FR +         Q T+F+GDN  GKT +L+A++
Sbjct: 1  MKIDQLEVENFRGFKKEVFKLSEQFTVFIGDNCTGKTAVLDALA 44


>gi|86610360|ref|YP_479122.1| chromosome segregation protein SMC [Synechococcus sp.
          JA-2-3B'a(2-13)]
 gi|86558902|gb|ABD03859.1| putative chromosome segregation protein SMC [Synechococcus sp.
          JA-2-3B'a(2-13)]
          Length = 1188

 Score = 37.0 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 7  IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62
          IK + ++ F+++ S   L      T+  G NG GK+NIL+ I F   LS  RG R     
Sbjct: 3  IKRIELTRFKSFGSTTSLPLLPGFTVISGPNGSGKSNILDGILFALGLSSSRGMRAERLL 62

Query: 63 DVTRIGS 69
          D+   GS
Sbjct: 63 DLVHSGS 69


>gi|328542327|ref|YP_004302436.1| hypothetical protein SL003B_0707 [polymorphum gilvum SL003B-26A1]
 gi|326412074|gb|ADZ69137.1| hypothetical protein SL003B_0707 [Polymorphum gilvum SL003B-26A1]
          Length = 294

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          +K+K   I  +R+     L+   Q T  +G N  GK+N+L A+  L+P  GF+
Sbjct: 1  MKLKQFRIQNYRSITDSGLIHVGQLTSLLGRNESGKSNLLRALHSLNPSDGFK 53


>gi|319784114|ref|YP_004143590.1| ATPase AAA [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170002|gb|ADV13540.1| AAA ATPase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 260

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 11  NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS------PGRGFRRASYADV 64
           N+  FR +    L F    TI VG+NG GK+ +LEAI  L+       G+G+R   ++  
Sbjct: 34  NLPLFRGH-DFELEFTTPITIIVGENGTGKSTLLEAIGALAGYDEAGGGKGYRPVDHSSA 92

Query: 65  TRIGSPSFFSTF 76
                 +  +TF
Sbjct: 93  IDKSGAALANTF 104


>gi|241895654|ref|ZP_04782950.1| SMC structural maintenance of chromosomes partitioning protein
          [Weissella paramesenteroides ATCC 33313]
 gi|241871021|gb|EER74772.1| SMC structural maintenance of chromosomes partitioning protein
          [Weissella paramesenteroides ATCC 33313]
          Length = 1184

 Score = 37.0 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +K+K L I+ F+++A   ++ F    T  VG NG GK+NI+EAI ++      +G R   
Sbjct: 1  MKLKTLEITGFKSFAERTKIEFMPGITGVVGPNGSGKSNIIEAIRWVMGEQSAKGLRGDK 60

Query: 61 YADV 64
           ADV
Sbjct: 61 MADV 64


>gi|166366712|ref|YP_001658985.1| ATPase [Microcystis aeruginosa NIES-843]
 gi|166089085|dbj|BAG03793.1| ATPase [Microcystis aeruginosa NIES-843]
          Length = 426

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 29/46 (63%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++IK + +  +R   SL + F  Q  +F+G NG GK+ IL++++ +
Sbjct: 1  MRIKSIKLDNYRGVVSLNIDFHRQLNVFIGVNGAGKSTILDSLAIM 46


>gi|157412408|ref|YP_001483274.1| SMC ATPase superfamily chromosome segregation protein
          [Prochlorococcus marinus str. MIT 9215]
 gi|157386983|gb|ABV49688.1| putative chromosome segregation protein, SMC ATPase superfamily
          [Prochlorococcus marinus str. MIT 9215]
          Length = 1196

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 15/94 (15%)

Query: 10 LNISEFRNYAS----LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62
          +N  EF N+ S    +++  +   T+  G NG GK+NIL+ I F   L+  RG R     
Sbjct: 6  INQVEFENFKSFGGNVKIPLEEGFTVVTGPNGSGKSNILDGILFCLGLANSRGMR----- 60

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
             R+  P   +     EG      +S+K   +D
Sbjct: 61 -AERL--PDLINNSKVKEGKSSETSVSVKFNIQD 91


>gi|296123944|ref|YP_003631722.1| SMC domain protein [Planctomyces limnophilus DSM 3776]
 gi|296016284|gb|ADG69523.1| SMC domain protein [Planctomyces limnophilus DSM 3776]
          Length = 653

 Score = 37.0 bits (84), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62
          +KI  + I  FR++    + FD  +T FVG NG GK+ IL A++       FR +S +  
Sbjct: 1  MKISQVRIQNFRSFRDETVHFD-NYTCFVGSNGSGKSTILMALNVF-----FRNSSSSVT 54

Query: 63 DVTRIGSPSF 72
          DV  +G+  F
Sbjct: 55 DVVNLGAEDF 64


>gi|256838545|ref|ZP_05544055.1| SMC domain-containing protein [Parabacteroides sp. D13]
 gi|256739464|gb|EEU52788.1| SMC domain-containing protein [Parabacteroides sp. D13]
          Length = 693

 Score = 36.6 bits (83), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          IK + IS FRN+    + F     + +G N  GK+N+L AI  +          Y+D  R
Sbjct: 15 IKEIKISNFRNFRDASVPFHEGVNVIIGHNNTGKSNLLRAIGLV--------LGYSDGRR 66

Query: 67 IGSPSFF 73
          +G+   F
Sbjct: 67 LGTCDLF 73


>gi|254495860|ref|ZP_05108771.1| chromosome segregation SMC protein [Legionella drancourtii LLAP12]
 gi|254354926|gb|EET13550.1| chromosome segregation SMC protein [Legionella drancourtii LLAP12]
          Length = 1164

 Score = 36.6 bits (83), Expect = 5.7,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 18/113 (15%)

Query: 5   IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L ++ F+++    +V F +Q    VG NG GK+NI++A+ ++   S  R  R  S
Sbjct: 1   MHLKQLKLAGFKSFVDPTVVYFPSQLVAVVGPNGCGKSNIIDAVRWVMGESSARNLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEG-MEGLADISIK-LETRDDRS 99
             DV   GS +            F ++  R+ G      +IS+K + TRD  S
Sbjct: 61  MTDVIFNGSSNRKPVGQASVELVFDNSLGRLTGPFASYGEISVKRVVTRDGDS 113


>gi|328354661|emb|CCA41058.1| Structural maintenance of chromosomes protein 2 [Pichia pastoris
          CBS 7435]
          Length = 1168

 Score = 36.6 bits (83), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          +K++ L I  F++YA+  ++  +D+Q     G NG GK+NIL+AI F+
Sbjct: 1  MKVEELIIDGFKSYATRTVISGWDSQFNAITGLNGSGKSNILDAICFV 48


>gi|221194733|ref|ZP_03567790.1| chromosome segregation protein SMC [Atopobium rimae ATCC 49626]
 gi|221185637|gb|EEE18027.1| chromosome segregation protein SMC [Atopobium rimae ATCC 49626]
          Length = 1182

 Score = 36.6 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 12/94 (12%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
          +K L +  F+++A    +VFD   T+ VG NG GK+N+ +AI ++      +  R  +  
Sbjct: 3  LKALTLKGFKSFADKTHMVFDPGLTVVVGPNGSGKSNVSDAILWVLGEQSAKMLRGQAME 62

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
          DV   GS +         G  G+A++++ L+  D
Sbjct: 63 DVIFSGSSA--------RGAVGVAEVTLVLDNAD 88


>gi|33338074|gb|AAQ13659.1|AF176781_1 MSTP142 [Homo sapiens]
          Length = 205

 Score = 36.6 bits (83), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50
          +K + I  F++Y   +++   Q  T  +G NG GK+N+++AISF+
Sbjct: 4  LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48


>gi|308050129|ref|YP_003913695.1| chromosome segregation protein SMC [Ferrimonas balearica DSM 9799]
 gi|307632319|gb|ADN76621.1| chromosome segregation protein SMC [Ferrimonas balearica DSM 9799]
          Length = 1152

 Score = 36.6 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 18/130 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ F  Q T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLKQIKLAGFKSFVDPTKVPFPDQMTAIVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGM-EGLADISIKLE-TRDDRSVRCLQIN 106
             DV   GS              F +   R+EG     A+I++K + TRD +S   L  N
Sbjct: 61  MTDVIFNGSSGRKPVSVASVELVFDNQAGRLEGQYASYAEIAVKRQVTRDGQSNYFLNGN 120

Query: 107 DVVIRVVDEL 116
               R + +L
Sbjct: 121 KCRRRDITDL 130


>gi|163915543|gb|AAI57408.1| Unknown (protein for IMAGE:6319183) [Xenopus laevis]
          Length = 360

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 7  IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I  FR+Y    +V  F ++H + VG NG GK+N   AI F+
Sbjct: 3  IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48


>gi|330830680|ref|YP_004393632.1| chromosome segregation protein SMC [Aeromonas veronii B565]
 gi|328805816|gb|AEB51015.1| Chromosome segregation protein SMC [Aeromonas veronii B565]
          Length = 1124

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++K + ++ F+++    R+   A  T  VG NG GK+N+++A+ ++   S  R  R  +
Sbjct: 1  MRLKLIKLAGFKSFVEPTRIELSADMTAVVGPNGCGKSNVIDAVRWVLGESSARHLRGEN 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MTDVIFNGS 69


>gi|321251833|ref|XP_003192194.1| cohesin complex subunit and chromosome segregation protein
          [Cryptococcus gattii WM276]
 gi|317458662|gb|ADV20407.1| Cohesin complex subunit and chromosome segregation protein,
          putative [Cryptococcus gattii WM276]
          Length = 1214

 Score = 36.6 bits (83), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ L + +F++Y   ++++  DA     +G NG GK+N+++AISF+
Sbjct: 1  MPLQRLELYDFKSYRGKQVIYFGDAPFVSVIGPNGAGKSNLMDAISFV 48


>gi|170285139|gb|AAI61245.1| Unknown (protein for IMAGE:8931875) [Xenopus (Silurana)
          tropicalis]
          Length = 429

 Score = 36.6 bits (83), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 7  IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I  FR+Y    +V  F ++H + VG NG GK+N   AI F+
Sbjct: 3  IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48


>gi|254572810|ref|XP_002493514.1| Component of the condensin complex, essential SMC chromosomal
          ATPase family member [Pichia pastoris GS115]
 gi|238033313|emb|CAY71335.1| Component of the condensin complex, essential SMC chromosomal
          ATPase family member [Pichia pastoris GS115]
          Length = 1133

 Score = 36.6 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          +K++ L I  F++YA+  ++  +D+Q     G NG GK+NIL+AI F+
Sbjct: 1  MKVEELIIDGFKSYATRTVISGWDSQFNAITGLNGSGKSNILDAICFV 48


>gi|171679495|ref|XP_001904694.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939373|emb|CAP64601.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1587

 Score = 36.6 bits (83), Expect = 6.2,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 4   RIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           RI I +L ++ F++YA  + V  F A  +  VG NG GK+N+++++ F+    GFR
Sbjct: 258 RIVITYLVLTNFKSYAGKQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFR 310


>gi|32450573|gb|AAH54173.1| Unknown (protein for IMAGE:6875131) [Xenopus laevis]
          Length = 348

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 7  IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I  FR+Y    +V  F ++H + VG NG GK+N   AI F+
Sbjct: 3  IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48


>gi|324991598|gb|EGC23531.1| RecF/RecN/SMC N domain protein [Streptococcus sanguinis SK353]
          Length = 887

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          ++I+ + I  F+N    +++ F    T+FVG NG GKT I +AI     G+  RR + +D
Sbjct: 1  MRIQKILIKNFKNVKGTKVIDFQDNVTLFVGPNGFGKTTIFDAIELSLTGK-IRRITESD 59

Query: 64 VT 65
           T
Sbjct: 60 YT 61


>gi|225467200|ref|XP_002262966.1| PREDICTED: hypothetical protein, partial [Vitis vinifera]
          Length = 603

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 87  DISIKLETRDDRSVRCLQINDVVIRVVDELN-KHLRISWLVPSMDRIFSGLSMERRRFLD 145
           D SIKLE  D RSV  L+    +  ++         IS+ V  + R  S  S+E  + + 
Sbjct: 378 DSSIKLEKNDGRSVPQLEYASAIGSLMYAAQCTRADISFAVSKLSRFISNPSVEHWKAIG 437

Query: 146 RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           R++  +      + + F+     +   + EGY D+SW SS+E  ++  G
Sbjct: 438 RVLGYLK---NTKELSFQY---SKFPAILEGYSDASWISSVEDNLSTTG 480


>gi|218673272|ref|ZP_03522941.1| hypothetical protein RetlG_17611 [Rhizobium etli GR56]
          Length = 524

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAIS 48
          +++  L I  F+N   + + FD     T+ +G+NG GK+N++EA++
Sbjct: 1  MRVDSLKIRSFKNLTDITIDFDEGELSTVIIGENGTGKSNVIEALA 46


>gi|74216698|dbj|BAE37767.1| unnamed protein product [Mus musculus]
          Length = 353

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 7  IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I  FR+Y    +V  F ++H + VG NG GK+N   AI F+
Sbjct: 3  IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48


>gi|330908687|gb|EGH37201.1| putative ABC oligo/dipeptide transport, ATP-binding protein
           [Escherichia coli AA86]
          Length = 577

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 9/113 (7%)

Query: 1   MTNRI-KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRR 58
           M N+I K+K +N+ +FR   ++ + F ++ T+  G NG  K+ IL  I+   S  + F +
Sbjct: 1   MANQITKLKNINVVKFRGLKNINIEFGSRLTVICGKNGTSKSTILGIIAQIFSFTKDFTK 60

Query: 59  ASYADVTR---IGSPSFFSTFAR----VEGMEGLADISIKLETRDDRSVRCLQ 104
               D+T+   + + SF S F+      E  +    + +K+   D  S + L+
Sbjct: 61  NPETDLTQYKTLTNGSFKSAFSEHFRLSEQFDVPGSMDVKISVYDGASNKHLE 113


>gi|303389012|ref|XP_003072739.1| chromosome segregation ATPase [Encephalitozoon intestinalis ATCC
          50506]
 gi|303301881|gb|ADM11379.1| chromosome segregation ATPase [Encephalitozoon intestinalis ATCC
          50506]
          Length = 1159

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 10 LNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYADVTR 66
          + +  F++YA   ++  FD + T  VG NG GK+NI++A++F L  G    RA+      
Sbjct: 6  VEVENFKSYAGFHIIGPFD-RFTCIVGPNGSGKSNIMDAVTFCLGIGSKHLRANNIRSLI 64

Query: 67 IGSPSFFSTFARVEG 81
           G  S  S    +EG
Sbjct: 65 NGGSSHASVALHIEG 79


>gi|74177551|dbj|BAB31016.3| unnamed protein product [Mus musculus]
          Length = 301

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50
          +K + I  F++Y   +++   Q  T  +G NG GK+N+++AISF+
Sbjct: 4  LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48


>gi|45692|emb|CAA32895.1| unnamed protein product [Pseudomonas putida]
          Length = 99

 Score = 36.6 bits (83), Expect = 6.3,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L+   +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGME-GLADISIKLETRDDRSVR 101
            +    +  + F  V+  E G +++ +  E + + ++R
Sbjct: 61  IQYEQAA-CTVFGEVQLTEGGTSNLGVSRERQGEFTIR 97


>gi|330817980|ref|YP_004361685.1| hypothetical protein bgla_1g31210 [Burkholderia gladioli BSR3]
 gi|327370373|gb|AEA61729.1| hypothetical protein bgla_1g31210 [Burkholderia gladioli BSR3]
          Length = 395

 Score = 36.6 bits (83), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I+F+ I  FR + + RL    +  + VG NG GKT + +  SFL
Sbjct: 1  MQIEFIEIKNFRLFRNTRLTNIPRLCVLVGANGTGKTTLFDVFSFL 46


>gi|261403240|ref|YP_003247464.1| SMC domain protein [Methanocaldococcus vulcanius M7]
 gi|261370233|gb|ACX72982.1| SMC domain protein [Methanocaldococcus vulcanius M7]
          Length = 1001

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 29/43 (67%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          IK + ++ F+++A+ ++ FD      +G+NG GK++I EA+ F
Sbjct: 3  IKEIKMNNFKSHANSKITFDKGIVAIIGENGSGKSSIFEAVFF 45


>gi|213648786|ref|ZP_03378839.1| recombination protein F [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
          Length = 63

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 23/43 (53%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          I +FRN  +  L         VG NG GKT++LEAI  L  GR
Sbjct: 8  IKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGR 50


>gi|191168024|ref|ZP_03029825.1| putative ATP binding protein [Escherichia coli B7A]
 gi|190901962|gb|EDV61710.1| putative ATP binding protein [Escherichia coli B7A]
          Length = 488

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 12/91 (13%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          N   I++  ++    Y  + +    + T+FV +NG GKT IL AI  L            
Sbjct: 5  NNYPIEYFRMTGVHGYKDITMKMKGKTTVFVSENGAGKTTILNAIRLLLE---------Q 55

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLE 93
          D T +    F S F ++ G E   ++ IK E
Sbjct: 56 DFTNLMRIDFKSIFIKILGHE---EVEIKNE 83


>gi|171058643|ref|YP_001790992.1| hypothetical protein Lcho_1960 [Leptothrix cholodnii SP-6]
 gi|170776088|gb|ACB34227.1| conserved hypothetical protein [Leptothrix cholodnii SP-6]
          Length = 522

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + I+ L +  F+ + +L L FD +  I VG N  GK+++L+A+  +        AS + V
Sbjct: 2  VTIRRLVLKNFKRFRTLELEFDGELNILVGGNEAGKSSVLQAMEIV------LSASRSKV 55

Query: 65 TRIGSPSFFSTFARVEGMEG 84
            IG  + F+     E + G
Sbjct: 56 ESIGIEALFNADCIAEFLAG 75


>gi|115565211|emb|CAL49464.1| chondroitin sulfate proteoglycan 6 (bamacan) [Xenopus (Silurana)
          tropicalis]
          Length = 458

 Score = 36.6 bits (83), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 7  IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I  FR+Y    +V  F ++H + VG NG GK+N   AI F+
Sbjct: 3  IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48


>gi|47937470|gb|AAH72043.1| LOC432330 protein [Xenopus laevis]
          Length = 457

 Score = 36.6 bits (83), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 7  IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I  FR+Y    +V  F ++H + VG NG GK+N   AI F+
Sbjct: 3  IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48


>gi|304314688|ref|YP_003849835.1| DNA double-strand repair ATPase Rad50 [Methanothermobacter
          marburgensis str. Marburg]
 gi|302588147|gb|ADL58522.1| predicted DNA double-strand repair ATPase Rad50
          [Methanothermobacter marburgensis str. Marburg]
          Length = 837

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I  L +   R+Y S  + FD   T+F GD G GKT +L AI F   G G +R        
Sbjct: 3  INSLELRNIRSYESGTVEFDDGVTLFEGDIGSGKTTLLLAIEFALFGLGDQRGDSLLRAT 62

Query: 67 IGSPSFFSTFARVEGME 83
            S S   TF  V+G E
Sbjct: 63 ANSGSVKLTFT-VDGAE 78


>gi|282897784|ref|ZP_06305782.1| hypothetical protein CRD_00705 [Raphidiopsis brookii D9]
 gi|281197324|gb|EFA72222.1| hypothetical protein CRD_00705 [Raphidiopsis brookii D9]
          Length = 302

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 29/47 (61%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          N  +++  +I+    +  ++++FD + TI + +NG GKT IL A+ +
Sbjct: 16 NSSQLRSFSINRLFGFKDIKILFDKEATILIAENGAGKTTILNALYY 62


>gi|257469919|ref|ZP_05634011.1| exonuclease SBCC [Fusobacterium ulcerans ATCC 49185]
 gi|317064148|ref|ZP_07928633.1| exonuclease SBCC [Fusobacterium ulcerans ATCC 49185]
 gi|313689824|gb|EFS26659.1| exonuclease SBCC [Fusobacterium ulcerans ATCC 49185]
          Length = 932

 Score = 36.6 bits (83), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 36/67 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +KI  +++  +R +  L + FD+   + +G+NG GK++ILEAI +       R  +  + 
Sbjct: 1  MKINRIHLENYRIHDKLDVEFDSGINLLLGENGKGKSSILEAIGYALFDSELRGGNQREA 60

Query: 65 TRIGSPS 71
           + G  S
Sbjct: 61 IKYGKKS 67


>gi|229173819|ref|ZP_04301359.1| hypothetical protein bcere0006_29170 [Bacillus cereus MM3]
 gi|228609669|gb|EEK66951.1| hypothetical protein bcere0006_29170 [Bacillus cereus MM3]
          Length = 592

 Score = 36.6 bits (83), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI+++ I  FRN+ +  + F A+ T+ +G N +GKTN++ A+  L
Sbjct: 1  MKIEWIKIKGFRNFDNETINF-AEQTLIIGANDIGKTNLIYALRLL 45


>gi|75907635|ref|YP_321931.1| hypothetical protein Ava_1413 [Anabaena variabilis ATCC 29413]
 gi|75701360|gb|ABA21036.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 396

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
           ++I +K + I  FR + S  L    +  + VG N  GKT+ILEAI  L
Sbjct: 18 ASKIMLKSIRIENFRGFHSFELQQLGRVNLLVGKNNTGKTSILEAIQLL 66


>gi|74180294|dbj|BAE24449.1| unnamed protein product [Mus musculus]
          Length = 284

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 7  IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I  FR+Y    +V  F ++H + VG NG GK+N   AI F+
Sbjct: 3  IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48


>gi|327474502|gb|EGF19907.1| recombination protein F [Streptococcus sanguinis SK408]
          Length = 75

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAIS-FLSP 52
          IKI  L IS FR++ +     D      IF G N VGKTN+L AI+ F +P
Sbjct: 2  IKISRLKISNFRSFTNEENTIDELDVLNIFAGRNNVGKTNVLRAINLFFNP 52


>gi|221214436|ref|ZP_03587407.1| DNA repair protein RecN [Burkholderia multivorans CGD1]
 gi|221165693|gb|EED98168.1| DNA repair protein RecN [Burkholderia multivorans CGD1]
          Length = 549

 Score = 36.6 bits (83), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++ L+I +F   A+L L FDA  T+F G+ G GK+ +++A++ 
Sbjct: 2  LRHLSIRDFVIVAALDLEFDAGFTVFSGETGAGKSILIDALAL 44


>gi|221200969|ref|ZP_03574009.1| DNA repair protein RecN [Burkholderia multivorans CGD2M]
 gi|221206579|ref|ZP_03579592.1| DNA repair protein RecN [Burkholderia multivorans CGD2]
 gi|221173888|gb|EEE06322.1| DNA repair protein RecN [Burkholderia multivorans CGD2]
 gi|221178819|gb|EEE11226.1| DNA repair protein RecN [Burkholderia multivorans CGD2M]
          Length = 549

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++ L+I +F   A+L L FDA  T+F G+ G GK+ +++A++ 
Sbjct: 2  LRHLSIRDFVIVAALDLEFDAGFTVFSGETGAGKSILIDALAL 44


>gi|161525810|ref|YP_001580822.1| DNA repair protein RecN [Burkholderia multivorans ATCC 17616]
 gi|189349469|ref|YP_001945097.1| DNA repair protein [Burkholderia multivorans ATCC 17616]
 gi|160343239|gb|ABX16325.1| DNA repair protein RecN [Burkholderia multivorans ATCC 17616]
 gi|189333491|dbj|BAG42561.1| DNA repair protein [Burkholderia multivorans ATCC 17616]
          Length = 549

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++ L+I +F   A+L L FDA  T+F G+ G GK+ +++A++ 
Sbjct: 2  LRHLSIRDFVIVAALDLEFDAGFTVFSGETGAGKSILIDALAL 44


>gi|226313175|ref|YP_002773069.1| hypothetical protein BBR47_35880 [Brevibacillus brevis NBRC
          100599]
 gi|226096123|dbj|BAH44565.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 418

 Score = 36.6 bits (83), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          KIK   I++   Y ++ + FD+   I VG+NGVGKT IL  + +
Sbjct: 4  KIKKFRINKLFGYKNVNIDFDSGVMILVGENGVGKTTILNVLYY 47


>gi|158312240|ref|YP_001504748.1| daunorubicin resistance ABC transporter ATPase subunit [Frankia sp.
           EAN1pec]
 gi|158107645|gb|ABW09842.1| daunorubicin resistance ABC transporter ATPase subunit [Frankia sp.
           EAN1pec]
          Length = 318

 Score = 36.6 bits (83), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 24/169 (14%)

Query: 32  FVGDNGVGKTNILEAIS-FLSPGRGFRRASYADVTR--------IGSPSFFSTFARV--- 79
            +G NG GKT I+  +S  L+PG G  R +  DV R        IG    FS    +   
Sbjct: 38  LLGPNGAGKTTIVNILSALLTPGDGEIRVAGFDVRREPAGVRAAIGVTGQFSAIDELLTG 97

Query: 80  -EGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELNKHLRI--SWLVPSMDRIFS 134
            E +  +AD++       DR      +  ++ R  +VD  ++  +     +   +D   +
Sbjct: 98  RENLRLMADLA-----HLDRVTATAAVTVMLERFDLVDAADRRAQTYSGGMKRRLDLAMT 152

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRM--IDFERLMRGRNRLLTEGYFDSS 181
            ++  R  FLD     +DPR RR +  I  E++  G   LLT  Y D +
Sbjct: 153 LIARPRLIFLDEPTAGLDPRSRRDLWAIVREQVADGVTVLLTTQYLDEA 201


>gi|149040398|gb|EDL94436.1| chondroitin sulfate proteoglycan 6, isoform CRA_a [Rattus
          norvegicus]
          Length = 696

 Score = 36.6 bits (83), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 7  IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I  FR+Y    +V  F ++H + VG NG GK+N   AI F+
Sbjct: 3  IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48


>gi|317052010|ref|YP_004113126.1| chromosome segregation protein SMC [Desulfurispirillum indicum
          S5]
 gi|316947094|gb|ADU66570.1| chromosome segregation protein SMC [Desulfurispirillum indicum
          S5]
          Length = 1150

 Score = 36.6 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 14/95 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
          +K K L IS F+++ S R V D +   T  VG NG GK+NI +AI ++      +  R A
Sbjct: 1  MKFKRLEISGFKSF-SERSVLDFRDGITAIVGPNGCGKSNISDAIRWVMGEQRAKDLRGA 59

Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLET 94
          S ADV   G+        +      +A++ +KLE+
Sbjct: 60 SMADVIFAGT--------QRRSPAQMAEVKLKLES 86


>gi|281206402|gb|EFA80589.1| structural maintenance of chromosome protein [Polysphondylium
           pallidum PN500]
          Length = 1324

 Score = 36.6 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 2   TNRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
           T R+ IK + +  F++YA  +++  F    T  +G NG GK+N+++A+ F+
Sbjct: 66  TRRLMIKMMELENFKSYAGKQVIGPFHKCFTSVIGPNGSGKSNVIDAMLFV 116


>gi|229552479|ref|ZP_04441204.1| DNA repair protein RecN [Lactobacillus rhamnosus LMS2-1]
 gi|258539849|ref|YP_003174348.1| DNA repair protein RecN [Lactobacillus rhamnosus Lc 705]
 gi|229314216|gb|EEN80189.1| DNA repair protein RecN [Lactobacillus rhamnosus LMS2-1]
 gi|257151525|emb|CAR90497.1| DNA repair protein RecN [Lactobacillus rhamnosus Lc 705]
          Length = 567

 Score = 36.6 bits (83), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I +F    +L L F +  T   G+ G GK+ I++A+  L+ GR            
Sbjct: 2  LQELAIHDFAIIDNLALSFQSGMTALTGETGAGKSIIIDAVGLLAGGR------------ 49

Query: 67 IGSPSFFSTFARVEGMEGLAD 87
           GS  F  T A    +EGL D
Sbjct: 50 -GSVDFIRTGASKASLEGLFD 69


>gi|255994064|ref|ZP_05427199.1| putative RecF/RecN/SMC N domain protein [Eubacterium saphenum
          ATCC 49989]
 gi|255993732|gb|EEU03821.1| putative RecF/RecN/SMC N domain protein [Eubacterium saphenum
          ATCC 49989]
          Length = 1187

 Score = 36.6 bits (83), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 12/96 (12%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++K L+I  F+++A  +++ FD   T  VG NG GK+N+ +A+ ++      R  R   
Sbjct: 1  MRLKSLSIKGFKSFADPVKIDFDEGITCIVGPNGSGKSNVSDALRWVFGEQSARTLRGYK 60

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
            DV       F  T  R +  +GLA++++ ++  D
Sbjct: 61 MEDVI------FAGTEKRRK--QGLAEVTVVIDNSD 88


>gi|167740054|ref|ZP_02412828.1| DNA repair protein RecN [Burkholderia pseudomallei 14]
          Length = 107

 Score = 36.6 bits (83), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 27/115 (23%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++     R     + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGER-----ADASVVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVI--RVVD 114
            GS              G ADIS +  T  DR  R L       +D V+  RVVD
Sbjct: 57  TGS--------------GRADISAEF-TPHDRVARWLDEHAFDADDTVMLRRVVD 96


>gi|229823203|ref|ZP_04449272.1| hypothetical protein GCWU000282_00501 [Catonella morbi ATCC 51271]
 gi|229787369|gb|EEP23483.1| hypothetical protein GCWU000282_00501 [Catonella morbi ATCC 51271]
          Length = 580

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ LNI  F     + L  +   T+  G+ G GK+ I++A+S L   RG       D+ R
Sbjct: 2   LRSLNIENFAIIDHVTLDLEMGMTVLAGETGAGKSIIIDALSLLMGSRGTN-----DLIR 56

Query: 67  IGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVR 101
            G+        F  + A    +  LAD  ++LE ++D  +R
Sbjct: 57  QGADKLVVEGLFSMSPAPAPLLAQLADFGLELEDQEDLIIR 97


>gi|319791344|ref|YP_004152984.1| hypothetical protein Varpa_0653 [Variovorax paradoxus EPS]
 gi|315593807|gb|ADU34873.1| hypothetical protein Varpa_0653 [Variovorax paradoxus EPS]
          Length = 521

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ L +S F+ + +L L FD +  + +GDN  GK+++L A+  +  G
Sbjct: 4  IERLVLSNFKKFDNLELEFDPELNLLIGDNEAGKSSVLLALELVMSG 50


>gi|199597158|ref|ZP_03210590.1| DNA repair ATPase [Lactobacillus rhamnosus HN001]
 gi|258508672|ref|YP_003171423.1| DNA repair protein RecN [Lactobacillus rhamnosus GG]
 gi|199591962|gb|EDZ00037.1| DNA repair ATPase [Lactobacillus rhamnosus HN001]
 gi|257148599|emb|CAR87572.1| DNA repair protein RecN [Lactobacillus rhamnosus GG]
 gi|259649978|dbj|BAI42140.1| DNA repair protein RecN [Lactobacillus rhamnosus GG]
          Length = 567

 Score = 36.6 bits (83), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I +F    +L L F +  T   G+ G GK+ I++A+  L+ GR            
Sbjct: 2  LQELAIHDFAIIDNLALSFQSGMTALTGETGAGKSIIIDAVGLLAGGR------------ 49

Query: 67 IGSPSFFSTFARVEGMEGLAD 87
           GS  F  T A    +EGL D
Sbjct: 50 -GSVDFIRTGASKASLEGLFD 69


>gi|320590923|gb|EFX03364.1| nuclear condensin complex subunit [Grosmannia clavigera kw1407]
          Length = 1522

 Score = 36.2 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 5/56 (8%)

Query: 4   RIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           RI I +L ++ F++YA  + V  F A  +  VG NG GK+N+++++ F+    GFR
Sbjct: 250 RIVIAYLILTNFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFR 302


>gi|162453150|ref|YP_001615517.1| hypothetical protein sce4874 [Sorangium cellulosum 'So ce 56']
 gi|161163732|emb|CAN95037.1| hypothetical protein sce4874 [Sorangium cellulosum 'So ce 56']
          Length = 345

 Score = 36.2 bits (82), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE-AISFLS 51
          I+ L++ +F  ++   LVF     +FVG+NG GKT+ L+ A S L+
Sbjct: 2  IRSLHVKDFTVFSEAELVFGEHLNVFVGENGTGKTHALKLAYSLLA 47


>gi|288931956|ref|YP_003436016.1| SMC domain protein [Ferroglobus placidus DSM 10642]
 gi|288894204|gb|ADC65741.1| SMC domain protein [Ferroglobus placidus DSM 10642]
          Length = 885

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
           Y  + I+    S GEQ V  + + LA  + +S+    A ++  DE + ++DE++R    R
Sbjct: 791 YMGREISFQQMSGGEQVVAALSVRLALLKFLSS----AGVVFFDEPTQNMDEERRRNFAR 846

Query: 337 IVTDIGS--QIFMTGTDKSVFDSLNETAKFMRISN 369
            +T+I    QIF+   D   F+ + E    +R  N
Sbjct: 847 QITNIKGFRQIFVITHD-DTFEEMVENVIRVRKEN 880


>gi|12851088|dbj|BAB28937.1| unnamed protein product [Mus musculus]
 gi|26353126|dbj|BAC40193.1| unnamed protein product [Mus musculus]
          Length = 199

 Score = 36.2 bits (82), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50
          +K + I  F++Y   +++   Q  T  +G NG GK+N+++AISF+
Sbjct: 4  LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48


>gi|326693699|ref|ZP_08230704.1| chromosome partition protein [Leuconostoc argentinum KCTC 3773]
          Length = 1184

 Score = 36.2 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +K+K L IS F+++A   ++ F    T  VG NG GK+NI+EAI ++      +  R   
Sbjct: 1  MKLKSLEISGFKSFADKTVIEFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKDLRGTK 60

Query: 61 YADV 64
           AD+
Sbjct: 61 MADI 64


>gi|21902529|ref|NP_663774.1| Bartomin [Rattus norvegicus]
 gi|21717411|dbj|BAC02935.1| barmotin [Rattus norvegicus]
          Length = 1184

 Score = 36.2 bits (82), Expect = 7.7,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +K+K L IS F+++A   ++ F    T  VG NG GK+NI+EAI ++      +  R   
Sbjct: 1  MKLKSLEISGFKSFADKTVIEFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKDLRGTK 60

Query: 61 YADV 64
           AD+
Sbjct: 61 MADI 64


>gi|148669759|gb|EDL01706.1| mCG20864 [Mus musculus]
          Length = 657

 Score = 36.2 bits (82), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 7  IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I  FR+Y    +V  F ++H + VG NG GK+N   AI F+
Sbjct: 3  IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48


>gi|315042508|ref|XP_003170630.1| chromosomes protein 1 structural maintenance [Arthroderma gypseum
          CBS 118893]
 gi|311344419|gb|EFR03622.1| chromosomes protein 1 structural maintenance [Arthroderma gypseum
          CBS 118893]
          Length = 1289

 Score = 36.2 bits (82), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M   I+++  N   ++ + +L L  DA  T  +G NG GK+N ++AISF+
Sbjct: 1  MGKLIRLELFNFKSYKGHHTL-LFGDAYFTSIIGPNGSGKSNSMDAISFV 49


>gi|194336900|ref|YP_002018694.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309377|gb|ACF44077.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 422

 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI+ + +  FR    L L FDA  T+    NG GKT +++A++ L
Sbjct: 1  MKIRTVTLKNFRGIEELCLPFDAGLTVIAAVNGGGKTTVVDALAML 46


>gi|119511431|ref|ZP_01630542.1| hypothetical protein N9414_16459 [Nodularia spumigena CCY9414]
 gi|119463896|gb|EAW44822.1| hypothetical protein N9414_16459 [Nodularia spumigena CCY9414]
          Length = 391

 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          ++ L I +FR   +L L    Q  I VG N  GKT++LEAIS
Sbjct: 4  LESLTIHQFRGLQNLELKDTGQINILVGVNNAGKTSVLEAIS 45


>gi|326332586|ref|ZP_08198854.1| hypothetical protein NBCG_04030 [Nocardioidaceae bacterium
          Broad-1]
 gi|325949587|gb|EGD41659.1| hypothetical protein NBCG_04030 [Nocardioidaceae bacterium
          Broad-1]
          Length = 635

 Score = 36.2 bits (82), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 29/57 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
          +++  + I+ FR  A      D   T FVG N  GKT +L+A+++ + G    R  Y
Sbjct: 1  MRVSRVEITGFRRLARTGTSIDGPLTAFVGFNEAGKTTLLDALTWFTDGGAISRIDY 57


>gi|15642383|ref|NP_232016.1| hypothetical protein VC2386 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591075|ref|ZP_01678387.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153820043|ref|ZP_01972710.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|229507550|ref|ZP_04397055.1| ATP binding protein [Vibrio cholerae BX 330286]
 gi|229519390|ref|ZP_04408833.1| ATP binding protein [Vibrio cholerae RC9]
 gi|229607056|ref|YP_002877704.1| ATP binding protein [Vibrio cholerae MJ-1236]
 gi|254849507|ref|ZP_05238857.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255746939|ref|ZP_05420884.1| ATP binding protein [Vibrio cholera CIRS 101]
 gi|262161518|ref|ZP_06030628.1| ATP binding protein [Vibrio cholerae INDRE 91/1]
 gi|298500254|ref|ZP_07010059.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656958|gb|AAF95529.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|53148487|dbj|BAD52080.1| hypothetical nucleotide-binding protein [Vibrio cholerae]
 gi|121547080|gb|EAX57216.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126509413|gb|EAZ72007.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|229344079|gb|EEO09054.1| ATP binding protein [Vibrio cholerae RC9]
 gi|229355055|gb|EEO19976.1| ATP binding protein [Vibrio cholerae BX 330286]
 gi|229369711|gb|ACQ60134.1| ATP binding protein [Vibrio cholerae MJ-1236]
 gi|254845212|gb|EET23626.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255735341|gb|EET90741.1| ATP binding protein [Vibrio cholera CIRS 101]
 gi|262028829|gb|EEY47483.1| ATP binding protein [Vibrio cholerae INDRE 91/1]
 gi|297540947|gb|EFH77001.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 540

 Score = 36.2 bits (82), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 1   MTNRIKIKFLNIS--EFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAIS 48
           + N  KI+  NIS  +++ ++ L+     ++T I +G+NG GK+ ILE+IS
Sbjct: 56  IINNAKIRLRNISLYDYKKFSKLKFTSSEKNTTIIIGNNGSGKSTILESIS 106


>gi|312136567|ref|YP_004003904.1| smc domain protein [Methanothermus fervidus DSM 2088]
 gi|311224286|gb|ADP77142.1| SMC domain protein [Methanothermus fervidus DSM 2088]
          Length = 865

 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +K+K L +   R+Y   +L F+   T+F GD G GK+ IL AI F   G G
Sbjct: 1  MKLKSLELKNIRSYKYEKLEFNDGVTLFEGDIGSGKSTILLAIEFALFGLG 51


>gi|153823341|ref|ZP_01976008.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229512254|ref|ZP_04401733.1| hypothetical protein VCE_003666 [Vibrio cholerae B33]
 gi|126519148|gb|EAZ76371.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229352219|gb|EEO17160.1| hypothetical protein VCE_003666 [Vibrio cholerae B33]
          Length = 540

 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 1   MTNRIKIKFLNIS--EFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAIS 48
           + N  KI+  NIS  +++ ++ L+     ++T I +G+NG GK+ ILE+IS
Sbjct: 56  IINNAKIRLRNISLYDYKKFSKLKFTSSEKNTTIIIGNNGSGKSTILESIS 106


>gi|74180915|dbj|BAE25655.1| unnamed protein product [Mus musculus]
          Length = 723

 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 7  IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I  FR+Y    +V  F ++H + VG NG GK+N   AI F+
Sbjct: 3  IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFV 48


>gi|67536854|ref|XP_662201.1| hypothetical protein AN4597.2 [Aspergillus nidulans FGSC A4]
 gi|40741209|gb|EAA60399.1| hypothetical protein AN4597.2 [Aspergillus nidulans FGSC A4]
 gi|259482571|tpe|CBF77179.1| TPA: nuclear condensin complex subunit Smc4, putative
           (AFU_orthologue; AFUA_2G02170) [Aspergillus nidulans
           FGSC A4]
          Length = 1476

 Score = 36.2 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 5/57 (8%)

Query: 3   NRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           +R+ I  L ++ F++YA  ++V  F A  +  VG NG GK+N+++A+ F+    GFR
Sbjct: 243 SRLMITTLVLNNFKSYAGKQVVGPFHASFSSVVGPNGSGKSNVIDALLFVF---GFR 296


>gi|195126481|ref|XP_002007699.1| GI13090 [Drosophila mojavensis]
 gi|193919308|gb|EDW18175.1| GI13090 [Drosophila mojavensis]
          Length = 307

 Score = 36.2 bits (82), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 90/217 (41%), Gaps = 41/217 (18%)

Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMI 160
           L  N  ++   + L +H    WL+P++ +    LS     FL      ++    H     
Sbjct: 79  LGPNGALMHCAEYLEQHFE-DWLLPALRK----LSATHNYFLFDCPGQVELYTHHTAMAR 133

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN-IARVEM--INALSS--LIMEY 215
            FERL R R  L+T    DS +CS     +A L + +N + R+ +  +N LS   L+ ++
Sbjct: 134 VFERLERERYNLVTVNLIDSHYCSEPAKFIATLLMALNTMMRMSLPHVNVLSKADLLRKH 193

Query: 216 VQKENFP--------HIKLSLTGFLDG-------KFDQSFCALKEEYAK---KLFDGRKM 257
             K +F          +K  L    D        K +++ C++ E+YA    KL D    
Sbjct: 194 ESKLHFNVDYYTDVLDLKYLLEKLDDDPTMRKYQKLNEAICSMVEDYALVSFKLLDAFST 253

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           DSM R           + ++ DKA    + +  EQ V
Sbjct: 254 DSMLR-----------LRNHIDKANGYVYKAGEEQTV 279


>gi|260946677|ref|XP_002617636.1| hypothetical protein CLUG_03080 [Clavispora lusitaniae ATCC
          42720]
 gi|238849490|gb|EEQ38954.1| hypothetical protein CLUG_03080 [Clavispora lusitaniae ATCC
          42720]
          Length = 1170

 Score = 36.2 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          +K++ L I  F++YA+  +V  +D Q     G NG GK+NIL+AI F+
Sbjct: 1  MKVEELIIDGFKSYATRTVVTGWDPQFNAITGLNGSGKSNILDAICFV 48


>gi|300214354|gb|ADJ78770.1| DNA repair protein [Lactobacillus salivarius CECT 5713]
          Length = 555

 Score = 36.2 bits (82), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L+I +F     +++ F  + T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRG 50


>gi|313672243|ref|YP_004050354.1| DNA repair protein recn [Calditerrivibrio nitroreducens DSM
          19672]
 gi|312938999|gb|ADR18191.1| DNA repair protein RecN [Calditerrivibrio nitroreducens DSM
          19672]
          Length = 547

 Score = 36.2 bits (82), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +KFL++  F     + + F     IF G+ G GKT I+ A+  L  G    RA + D T+
Sbjct: 2  LKFLSVQNFSVIEDIEIEFSDGLNIFTGETGAGKTVIINAVKIL-VGEKLSRAFFRDETK 60


>gi|255725234|ref|XP_002547546.1| structural maintenance of chromosome 2 [Candida tropicalis
          MYA-3404]
 gi|240135437|gb|EER34991.1| structural maintenance of chromosome 2 [Candida tropicalis
          MYA-3404]
          Length = 1171

 Score = 36.2 bits (82), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          +K++ L I  F++YA+  ++  +D+Q     G NG GK+NIL+AI F+
Sbjct: 1  MKVEELIIDGFKSYAARTVISGWDSQFNAITGLNGSGKSNILDAICFV 48


>gi|303316059|ref|XP_003068034.1| SMC family, C-terminal domain containing protein [Coccidioides
          posadasii C735 delta SOWgp]
 gi|240107710|gb|EER25889.1| SMC family, C-terminal domain containing protein [Coccidioides
          posadasii C735 delta SOWgp]
          Length = 1286

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M   I+++  N   ++ + +L L  DA  T  +G NG GK+N ++AISF+
Sbjct: 1  MGKLIRLELFNFKSYKGHHTL-LFGDAYFTSIIGPNGSGKSNSMDAISFV 49


>gi|90961515|ref|YP_535431.1| DNA repair protein [Lactobacillus salivarius UCC118]
 gi|227890602|ref|ZP_04008407.1| DNA repair protein [Lactobacillus salivarius ATCC 11741]
 gi|301300974|ref|ZP_07207139.1| DNA repair protein RecN [Lactobacillus salivarius
          ACS-116-V-Col5a]
 gi|90820709|gb|ABD99348.1| DNA repair protein [Lactobacillus salivarius UCC118]
 gi|227867540|gb|EEJ74961.1| DNA repair protein [Lactobacillus salivarius ATCC 11741]
 gi|300851441|gb|EFK79160.1| DNA repair protein RecN [Lactobacillus salivarius
          ACS-116-V-Col5a]
          Length = 555

 Score = 36.2 bits (82), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 30/49 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L+I +F     +++ F  + T+  G+ G GK+ I++A+  L+ GRG
Sbjct: 2  LQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRG 50


>gi|291480605|gb|ADE06380.1| structural maintenance of chromosomes 1-like 1 [Microtus arvalis]
 gi|291480607|gb|ADE06381.1| structural maintenance of chromosomes 1-like 1 [Microtus levis]
          Length = 104

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFL 50
          +K + I  F++Y   +++   Q  T  +G NG GK+N+++AISF+
Sbjct: 4  LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFV 48


>gi|257866577|ref|ZP_05646230.1| chromosome partition protein SMC [Enterococcus casseliflavus
          EC30]
 gi|257872907|ref|ZP_05652560.1| chromosome partition protein SMC [Enterococcus casseliflavus
          EC10]
 gi|257800535|gb|EEV29563.1| chromosome partition protein SMC [Enterococcus casseliflavus
          EC30]
 gi|257807071|gb|EEV35893.1| chromosome partition protein SMC [Enterococcus casseliflavus
          EC10]
          Length = 1192

 Score = 36.2 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
          +K + I+ F+++A  R V D +H  T  VG NG GK+NI EAI ++      +  R    
Sbjct: 3  LKRIEIAGFKSFAD-RTVIDFEHRVTAVVGPNGSGKSNITEAIRWVLGEQSAKNLRGGKM 61

Query: 62 ADVTRIGS 69
           DV   GS
Sbjct: 62 PDVIFAGS 69


>gi|213408381|ref|XP_002174961.1| conserved hypothetical protein [Schizosaccharomyces japonicus
          yFS275]
 gi|212003008|gb|EEB08668.1| conserved hypothetical protein [Schizosaccharomyces japonicus
          yFS275]
          Length = 1173

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI+ L I  F++YA   ++  +D+Q     G NG GK+NIL+AI F+
Sbjct: 1  MKIEELIIDGFKSYAVRTVISGWDSQFNAITGLNGSGKSNILDAICFV 48


>gi|91793868|ref|YP_563519.1| chromosome segregation protein SMC [Shewanella denitrificans
          OS217]
 gi|91715870|gb|ABE55796.1| Chromosome segregation protein SMC [Shewanella denitrificans
          OS217]
          Length = 1138

 Score = 36.2 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++K + ++ F+++  + ++ F+ Q +  +G NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1  MRLKQIKLAGFKSFVDVTKIPFEQQLSAIIGPNGCGKSNIIDAVRWVLGESSAKNLRGDS 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MTDVIFNGS 69


>gi|147673450|ref|YP_001217887.1| hypothetical protein VC0395_A1963 [Vibrio cholerae O395]
 gi|5830765|emb|CAB54591.1| putative ATP binding protein [Vibrio cholerae]
 gi|146315333|gb|ABQ19872.1| conserved hypothetical protein [Vibrio cholerae O395]
          Length = 265

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 3   NRIKIKFLNIS--EFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAIS 48
           N  KI+  NIS  +++ ++ L+     ++T I +G+NG GK+ ILE+IS
Sbjct: 58  NNAKIRLRNISLYDYKKFSKLKFTSSEKNTTIIIGNNGSGKSTILESIS 106


>gi|148544276|ref|YP_001271646.1| AAA ATPase [Lactobacillus reuteri DSM 20016]
 gi|184153654|ref|YP_001841995.1| hypothetical protein LAR_0999 [Lactobacillus reuteri JCM 1112]
 gi|227364993|ref|ZP_03849033.1| AAA ATPase [Lactobacillus reuteri MM2-3]
 gi|325681695|ref|ZP_08161215.1| AAA ATPase [Lactobacillus reuteri MM4-1A]
 gi|148531310|gb|ABQ83309.1| AAA ATPase [Lactobacillus reuteri DSM 20016]
 gi|183224998|dbj|BAG25515.1| hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227069963|gb|EEI08346.1| AAA ATPase [Lactobacillus reuteri MM2-3]
 gi|324979007|gb|EGC15954.1| AAA ATPase [Lactobacillus reuteri MM4-1A]
          Length = 537

 Score = 36.2 bits (82), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 10 LNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          L +  F+++  L ++ F+    I VG+NGVGKT +++A+  +  G  F 
Sbjct: 6  LYLYNFKSFKGLQKITFNRNKNILVGNNGVGKTTVIQALRLILKGSSFE 54


>gi|270159077|ref|ZP_06187733.1| chromosome partition protein SMC [Legionella longbeachae D-4968]
 gi|289166087|ref|YP_003456225.1| chromosome partition protein smc [Legionella longbeachae NSW150]
 gi|269987416|gb|EEZ93671.1| chromosome partition protein SMC [Legionella longbeachae D-4968]
 gi|288859260|emb|CBJ13194.1| putative chromosome partition protein smc [Legionella longbeachae
          NSW150]
          Length = 1164

 Score = 36.2 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +K L ++ F+++    +V F +Q    VG NG GK+NI++A+ ++   S  R  R  S
Sbjct: 1  MHLKQLKLAGFKSFVDPTVVHFPSQLVAVVGPNGCGKSNIIDAVRWVMGESSARNLRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MTDVIFNGS 69


>gi|253584165|ref|ZP_04861363.1| nuclease sbcCD subunit C [Fusobacterium varium ATCC 27725]
 gi|251834737|gb|EES63300.1| nuclease sbcCD subunit C [Fusobacterium varium ATCC 27725]
          Length = 448

 Score = 36.2 bits (82), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 36/67 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +KI  +++  +R +  L + FD+   + +G+NG GK++ILEAI +       R  +  + 
Sbjct: 1  MKINRIHLENYRIHDKLDVEFDSGINLLLGENGKGKSSILEAIGYALFDSELRGGNQREA 60

Query: 65 TRIGSPS 71
           + G  S
Sbjct: 61 IKYGKKS 67


>gi|257876181|ref|ZP_05655834.1| chromosome partition protein SMC [Enterococcus casseliflavus
          EC20]
 gi|257810347|gb|EEV39167.1| chromosome partition protein SMC [Enterococcus casseliflavus
          EC20]
          Length = 1192

 Score = 36.2 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
          +K + I+ F+++A  R V D +H  T  VG NG GK+NI EAI ++      +  R    
Sbjct: 3  LKRIEIAGFKSFAD-RTVIDFEHRVTAVVGPNGSGKSNITEAIRWVLGEQSAKNLRGGKM 61

Query: 62 ADVTRIGS 69
           DV   GS
Sbjct: 62 PDVIFAGS 69


>gi|254517359|ref|ZP_05129416.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
 gi|219674197|gb|EED30566.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
          Length = 624

 Score = 36.2 bits (82), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAI 47
          ++++ ++IS ++N     L F+ +    IFVG NG GK+N LEA+
Sbjct: 1  MRLRSVSISRYKNLRDFSLDFEGEEFIDIFVGKNGCGKSNFLEAL 45


>gi|156540772|ref|XP_001600265.1| PREDICTED: similar to LP09268p [Nasonia vitripennis]
          Length = 1307

 Score = 36.2 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 6  KIKFLNISEFRNYASLR----LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +IK L I   RN+   R    + F    T+ +G NG GKT I+EA+ F++ G
Sbjct: 3  RIKDLEIRGIRNFGDERAKVLIHFSKPLTLILGPNGTGKTTIIEALKFVTSG 54


>gi|288923593|ref|ZP_06417703.1| chromosome segregation protein SMC [Frankia sp. EUN1f]
 gi|288345055|gb|EFC79474.1| chromosome segregation protein SMC [Frankia sp. EUN1f]
          Length = 1256

 Score = 36.2 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 28/219 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++AI+++      +  R  +
Sbjct: 1   MHLKSLTLRGFKSFASSTTLHLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGT 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGL--ADISIKLETRDDRSVRCL--------QINDVVI 110
            +DV   G+P+      R E +  +  AD ++ +E  +    R +         IN    
Sbjct: 61  MSDVIFAGTPA-RPALGRAEVLLTIDNADGALPIEYAEVTVGRLMFRSGESEYTINGTAC 119

Query: 111 RVVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           R++D         + + L +      +D +      +RR F++     +  +HR+R    
Sbjct: 120 RLLDIQELMSDSGIGRELHVVVGQGQLDAVLHARPEDRRSFIEEAAGVL--KHRKRK--- 174

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
           E+ +R    +       +   + +  Q+  LG +  IAR
Sbjct: 175 EKALRKLEAMAANLTRLTDLSAELRRQLGPLGRQAEIAR 213


>gi|15829155|ref|NP_326515.1| hypothetical protein MYPU_6840 [Mycoplasma pulmonis UAB CTIP]
 gi|38257744|sp|Q98PN8|RSGA_MYCPU RecName: Full=Putative ribosome biogenesis GTPase RsgA
 gi|14090099|emb|CAC13857.1| conserved hypothetical protein [Mycoplasma pulmonis]
          Length = 272

 Score = 36.2 bits (82), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 11/96 (11%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAIS---FLSP------GRGFRRASYADVTRIG 68
           Y  L  +F+ + ++ VG +GVGKT IL  +S   F +       GRG        +    
Sbjct: 135 YKKLNDIFEKKISVLVGQSGVGKTTILNKVSLNNFFTQNISKALGRGKHSTRVVKMIDFN 194

Query: 69  SPSFFST--FARVEGMEGLADISIKLETRDDRSVRC 102
           +     T  F+ +E      D+S   E+ D  S RC
Sbjct: 195 NGQIIDTPGFSSIEIQMSQKDLSKSFESFDKYSQRC 230


>gi|225680949|gb|EEH19233.1| conserved hypothetical protein [Paracoccidioides brasiliensis
          Pb03]
          Length = 1279

 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M   I+++  N   ++ + +L L  DA  T  +G NG GK+N ++AISF+
Sbjct: 1  MGKLIRLELFNFKSYKGHHTL-LFGDAYFTSIIGPNGSGKSNSMDAISFV 49


>gi|310778882|ref|YP_003967215.1| chromosome segregation protein SMC [Ilyobacter polytropus DSM 2926]
 gi|309748205|gb|ADO82867.1| chromosome segregation protein SMC [Ilyobacter polytropus DSM 2926]
          Length = 1170

 Score = 36.2 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 10/115 (8%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + +K + I+ F+++A  + L F+   T  VG NG GK+NIL+AI ++         SY +
Sbjct: 1   MHLKAVEINGFKSFAEKINLDFNTGITSIVGPNGSGKSNILDAILWV-----LGEQSYKN 55

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           +    S     +  + +  + LA++S+ ++  D   V  L+I+D  I+V   L+K
Sbjct: 56  IRAKESRDVIFSGGKNKKPKSLAEVSLYIDNSD--RVLPLEIDD--IKVTRRLHK 106


>gi|327292781|ref|XP_003231088.1| SMC protein [Trichophyton rubrum CBS 118892]
 gi|326466718|gb|EGD92171.1| SMC protein [Trichophyton rubrum CBS 118892]
          Length = 1309

 Score = 36.2 bits (82), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M   I+++  N   ++ + +L L  DA  T  +G NG GK+N ++AISF+
Sbjct: 38 MGKLIRLELFNFKSYKGHHTL-LFGDAYFTSIIGPNGSGKSNSMDAISFV 86


>gi|295672530|ref|XP_002796811.1| conserved hypothetical protein [Paracoccidioides brasiliensis
          Pb01]
 gi|226282183|gb|EEH37749.1| conserved hypothetical protein [Paracoccidioides brasiliensis
          Pb01]
          Length = 1298

 Score = 36.2 bits (82), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M   I+++  N   ++ + +L L  DA  T  +G NG GK+N ++AISF+
Sbjct: 1  MGKLIRLELFNFKSYKGHHTL-LFGDAYFTSIIGPNGSGKSNSMDAISFV 49


>gi|123501445|ref|XP_001328078.1| SMC family, C-terminal domain containing protein [Trichomonas
          vaginalis G3]
 gi|121911016|gb|EAY15855.1| SMC family, C-terminal domain containing protein [Trichomonas
          vaginalis G3]
          Length = 1177

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 10/87 (11%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR- 57
          M+ R+ +  + +  F++Y   ++V  F+ Q T  VG NG GK+N+++A+ F+    GFR 
Sbjct: 1  MSERLIVTQIVLENFKSYYGRQIVGPFNNQLTCIVGPNGSGKSNLIDALLFVF---GFRA 57

Query: 58 -RASYADVTRI---GSPSFFSTFARVE 80
           R  ++ +T +   G      ++ARVE
Sbjct: 58 KRMRHSKLTGLIYNGPDHPNISYARVE 84


>gi|187476880|ref|YP_784904.1| hypothetical protein BAV0368 [Bordetella avium 197N]
 gi|115421466|emb|CAJ47972.1| conserved hypothetical phage protein [Bordetella avium 197N]
          Length = 522

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 6/78 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I+ L +  F+ + +L L FD +  I VG N  GK+++L+A+  +        AS + V  
Sbjct: 4  IQRLVLKNFKRFKALELEFDPELNILVGGNEAGKSSVLQAMDIV------LSASRSKVEA 57

Query: 67 IGSPSFFSTFARVEGMEG 84
          IG  + F+     E + G
Sbjct: 58 IGLEALFNADCIAEFLAG 75


>gi|50556870|ref|XP_505843.1| YALI0F24783p [Yarrowia lipolytica]
 gi|49651713|emb|CAG78654.1| YALI0F24783p [Yarrowia lipolytica]
          Length = 1172

 Score = 36.2 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          +K++ L I  F++YA+  ++  +D Q     G NG GK+NIL+AI F+
Sbjct: 1  MKVEELVIDGFKSYATRTVISGWDPQFNCITGLNGSGKSNILDAICFV 48


>gi|324500675|gb|ADY40310.1| Structural maintenance of chromosomes protein 3 [Ascaris suum]
          Length = 1202

 Score = 36.2 bits (82), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + IS FR+Y    +     +H +FVG NG GK+N   AI F+
Sbjct: 3  IKQVRISGFRSYRDATISDLSPKHNVFVGRNGSGKSNFFFAIEFV 47


>gi|302309923|ref|XP_451012.2| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|199424766|emb|CAH02600.2| KLLA0A00286p [Kluyveromyces lactis]
          Length = 1224

 Score = 36.2 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK + IS F+ Y +  +V  F   H + VG NG GK+N   AI F+
Sbjct: 2  VHIKTVIISGFKTYKNRTVVENFSPHHNVVVGSNGSGKSNFFAAIRFV 49


>gi|331701504|ref|YP_004398463.1| DNA repair protein RecN [Lactobacillus buchneri NRRL B-30929]
 gi|329128847|gb|AEB73400.1| DNA repair protein RecN [Lactobacillus buchneri NRRL B-30929]
          Length = 567

 Score = 36.2 bits (82), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L+I++F     L + F A  T+  G+ G GK+ I++A+  L  GRG       D+ R G+
Sbjct: 5  LSITDFAIIEHLDIDFQAGMTVLTGETGAGKSIIIDAVGLLVGGRGSH-----DLIRTGA 59


>gi|325567329|ref|ZP_08143996.1| cell division protein Smc [Enterococcus casseliflavus ATCC 12755]
 gi|325158762|gb|EGC70908.1| cell division protein Smc [Enterococcus casseliflavus ATCC 12755]
          Length = 1192

 Score = 36.2 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 6/68 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQH--TIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
          +K + I+ F+++A  R V D +H  T  VG NG GK+NI EAI ++      +  R    
Sbjct: 3  LKRIEIAGFKSFAD-RTVIDFEHRVTAVVGPNGSGKSNITEAIRWVLGEQSAKNLRGGKM 61

Query: 62 ADVTRIGS 69
           DV   GS
Sbjct: 62 PDVIFAGS 69


>gi|156094454|ref|XP_001613264.1| chromosome condensation protein [Plasmodium vivax SaI-1]
 gi|148802138|gb|EDL43537.1| chromosome condensation protein, putative [Plasmodium vivax]
          Length = 1455

 Score = 36.2 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 3   NRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
           +RI I  L +  F++Y+ ++++  F  + +  VG NG GK+NI++A+ F+   R    R+
Sbjct: 54  SRIIIDRLVLENFKSYSGVKVIGPFYKKFSCIVGPNGSGKSNIIDAMLFVFGRRAKKIRQ 113

Query: 59  ASYADVTRIGSPSFFSTFARV 79
              +D+      S  + + +V
Sbjct: 114 NKLSDLIHSSKHSMHNEYTKV 134


>gi|284175980|ref|ZP_06389949.1| hypothetical protein Ssol98_15165 [Sulfolobus solfataricus 98/2]
          Length = 363

 Score = 36.2 bits (82), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          IK L I  F++Y      F+ + +I VG NG GKTN+++A SFL   +  R  SY 
Sbjct: 2  IKRLKIKNFKSYRDSEFEFE-KVSIVVGPNGSGKTNLVDAFSFLK--QLIRPLSYP 54


>gi|221121736|ref|XP_002162125.1| PREDICTED: similar to structural maintenance of chromosomes 1A,
          partial [Hydra magnipapillata]
          Length = 164

 Score = 36.2 bits (82), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          L I  F++Y    L+  ++ +  +G NG GK+N+++AISF+
Sbjct: 8  LEIINFKSYKGKHLIGFSKFSAIIGPNGCGKSNMMDAISFV 48


>gi|94496121|ref|ZP_01302699.1| Chromosome segregation protein SMC [Sphingomonas sp. SKA58]
 gi|94424300|gb|EAT09323.1| Chromosome segregation protein SMC [Sphingomonas sp. SKA58]
          Length = 1147

 Score = 36.2 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          ++IK L +S F+++     L  +   T  VG NG GK+N+LEAI ++   S  +  R A 
Sbjct: 1  MQIKRLKLSGFKSFVDPTELRIEPGLTGIVGPNGCGKSNLLEAIRWVMGESSAKSMRGAG 60

Query: 61 YADVTRIGSPS 71
            DV   G+ S
Sbjct: 61 MEDVIFAGTAS 71


>gi|258650434|ref|YP_003199590.1| hypothetical protein Namu_0168 [Nakamurella multipartita DSM 44233]
 gi|258553659|gb|ACV76601.1| conserved hypothetical protein [Nakamurella multipartita DSM 44233]
          Length = 1409

 Score = 36.2 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 12/93 (12%)

Query: 264  TLIGPHRSDLIVDYCDKAITIAHGST---GEQKVVL-VGIFLAHARLISNTTGFAPILL- 318
            TL+GP       D  +  +T A  ST   GEQ V L + +F A   ++S+     P LL 
Sbjct: 1251 TLVGP-------DGQEDRLTQARHSTLSGGEQSVSLHLPLFAAAHVMLSSAEPHCPRLLA 1303

Query: 319  LDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            LDE  A +D+  R+ L  + T     +FMTG D
Sbjct: 1304 LDEAFAGIDDAGRSELLGLTTQFDLDLFMTGYD 1336


>gi|304558200|gb|ADM40864.1| hypothetical protein ETAF_0742 [Edwardsiella tarda FL6-60]
          Length = 708

 Score = 36.2 bits (82), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          IK L+I  FRN+ S +L F  +  +TI VG+N  GKTN+ EA+
Sbjct: 3  IKNLSIRNFRNFQSTKLNFKKECVNTI-VGENSSGKTNVFEAM 44


>gi|258564324|ref|XP_002582907.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237908414|gb|EEP82815.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1261

 Score = 36.2 bits (82), Expect = 9.6,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M   I+++  N   ++ + +L L+ DA  T  +G NG GK+N ++AISF+
Sbjct: 1  MGKLIRLELFNFKSYKGHHTL-LLGDAYFTSIIGPNGSGKSNSMDAISFV 49


>gi|319941628|ref|ZP_08015952.1| ATP/GTP-binding protein [Sutterella wadsworthensis 3_1_45B]
 gi|319804858|gb|EFW01712.1| ATP/GTP-binding protein [Sutterella wadsworthensis 3_1_45B]
          Length = 511

 Score = 36.2 bits (82), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63
          +KIK + I  FR Y     V     T+ +G N +GK+ ILEA+  F + G G  +   +D
Sbjct: 1  MKIKSVKIKNFRGYRDEICVDFDNLTVLIGKNDIGKSTILEALDIFFNEGNGIVKWDKSD 60

Query: 64 VT 65
          + 
Sbjct: 61 LN 62


>gi|317129741|ref|YP_004096023.1| ATP-dependent endonuclease of the OLD family [Bacillus
          cellulosilyticus DSM 2522]
 gi|315474689|gb|ADU31292.1| ATP-dependent endonuclease of the OLD family [Bacillus
          cellulosilyticus DSM 2522]
          Length = 669

 Score = 36.2 bits (82), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 6/47 (12%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          R+KIK      FRNY  + +V   +  I +G+N VGKTN L AI  +
Sbjct: 11 RVKIK-----NFRNYKDVDVVLSHKQVI-IGENNVGKTNFLRAIQII 51


>gi|222085464|ref|YP_002543994.1| ABC transporter [Agrobacterium radiobacter K84]
 gi|221722912|gb|ACM26068.1| ABC transporter [Agrobacterium radiobacter K84]
          Length = 629

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 304 ARLISNTTGF-AP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           ARL+     F AP +L+LDE + HLD D RNAL + + D    + +   D+ + ++
Sbjct: 436 ARLLMGLAAFDAPNLLILDEPTNHLDIDSRNALIQALNDYSGAVILISHDRHLIEA 491


>gi|307150934|ref|YP_003886318.1| ATP-dependent endonuclease of the OLD family-like protein
          [Cyanothece sp. PCC 7822]
 gi|306981162|gb|ADN13043.1| ATP-dependent endonuclease of the OLD family-like protein
          [Cyanothece sp. PCC 7822]
          Length = 576

 Score = 35.8 bits (81), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 17/62 (27%), Positives = 33/62 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +KI  L I  +RN   + L+F       +G+N +GK+N+L+ ++ L   + F+   + + 
Sbjct: 1  MKIINLKIQNYRNLDGVELIFHPDINFIIGENNLGKSNLLKLLNILFNQQRFKEDDFYNS 60

Query: 65 TR 66
           R
Sbjct: 61 DR 62


>gi|28958118|gb|AAH47324.1| Structural maintenance of chromosomes 3 [Homo sapiens]
          Length = 1217

 Score = 35.8 bits (81), Expect = 9.9,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 7  IKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I  FR+Y    +V  F ++H + VG NG GK+N+  AI F+
Sbjct: 3  IKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNLFYAIQFV 48


Searching..................................................done


Results from round 2




>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040443|gb|ACT57239.1| recombination protein F [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 375

 Score =  456 bits (1173), Expect = e-126,   Method: Composition-based stats.
 Identities = 375/375 (100%), Positives = 375/375 (100%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS
Sbjct: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL
Sbjct: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS
Sbjct: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF
Sbjct: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
           CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF
Sbjct: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE
Sbjct: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360

Query: 361 TAKFMRISNHQALCI 375
           TAKFMRISNHQALCI
Sbjct: 361 TAKFMRISNHQALCI 375


>gi|315121983|ref|YP_004062472.1| recombination protein F [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495385|gb|ADR51984.1| recombination protein F [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 375

 Score =  415 bits (1066), Expect = e-114,   Method: Composition-based stats.
 Identities = 303/373 (81%), Positives = 342/373 (91%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M N+IKIK LN+SEFRNY SLRLVFD+Q TIFVGDNG GKTNILEAIS LSPGRG RRAS
Sbjct: 1   MINKIKIKRLNVSEFRNYVSLRLVFDSQQTIFVGDNGAGKTNILEAISLLSPGRGLRRAS 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y+DVTRIGS S FSTFA VEGM+GLA+ISIKLE++DDRS+RCL+INDV IRVVDELN HL
Sbjct: 61  YSDVTRIGSLSLFSTFACVEGMDGLAEISIKLESKDDRSIRCLRINDVAIRVVDELNSHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+SWLVPSMDRIFSG S ERRRFLDRMVF+IDPRHRRR+IDFERLMRGRNRLL+EG FD 
Sbjct: 121 RVSWLVPSMDRIFSGPSTERRRFLDRMVFSIDPRHRRRIIDFERLMRGRNRLLSEGCFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SWCSSIE+QMA LGV+I+IARV+MI+ LSSL+ EY+QKENFPH++L+LTGFLDGK +QSF
Sbjct: 181 SWCSSIESQMAGLGVEIDIARVKMIDELSSLMAEYIQKENFPHVELNLTGFLDGKLNQSF 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             LK+EY K LFDGR++DS++RRTLIGPHRSDL+VDYCDK I I HGSTGEQKVVLVGIF
Sbjct: 241 LELKQEYVKILFDGRRIDSIARRTLIGPHRSDLVVDYCDKDIKIVHGSTGEQKVVLVGIF 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARLISNTTGFAPILLLDEISAHLDE +RNALFRIV+DIGSQIF+TGTD+S+F SL++
Sbjct: 301 LAHARLISNTTGFAPILLLDEISAHLDEGRRNALFRIVSDIGSQIFITGTDRSMFSSLSD 360

Query: 361 TAKFMRISNHQAL 373
           TA FMRI+NHQA 
Sbjct: 361 TATFMRIANHQAF 373


>gi|222084353|ref|YP_002542882.1| DNA replication and repair protein [Agrobacterium radiobacter K84]
 gi|254790457|sp|B9JGW1|RECF_AGRRK RecName: Full=DNA replication and repair protein recF
 gi|221721801|gb|ACM24957.1| DNA replication and repair protein [Agrobacterium radiobacter K84]
          Length = 375

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 189/372 (50%), Positives = 258/372 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ I  L +++FRNYA+  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVFISRLKLTDFRNYAAAALTLDERHVVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R+ +P+ FS FA +EGME   +I   ++T D+ + R L+IN    + VDEL  HL
Sbjct: 61  YADVVRVAAPNGFSIFAELEGMEDTVEIGTGVDTSDETTARKLRINGTPAKTVDELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S ERRRFLDR+V ++DP H RR  DFER MR RNRLL+E  FD 
Sbjct: 121 RVLWLTPAMDGLFTGGSSERRRFLDRLVLSLDPAHGRRASDFERAMRSRNRLLSESRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ LI E  +   FP   L L+GFLDG+FD+  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIAETREATPFPSAALELSGFLDGQFDRPA 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L++ YA  L +GR  D+ + RTL GPHR+DL+V + +K +     STGEQK +LVG+ 
Sbjct: 241 LDLEDAYAGMLREGRYRDAAAGRTLDGPHRTDLLVRHREKDMEAERCSTGEQKALLVGLI 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG AP+LLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L E
Sbjct: 301 LAHARLVGNLTGHAPVLLLDEIAAHLDEGRRAALFDLIDRLGGQAFMTGTDRAMFSALGE 360

Query: 361 TAKFMRISNHQA 372
            A+F  +++   
Sbjct: 361 RAQFFTVAHGGI 372


>gi|190889810|ref|YP_001976352.1| DNA replication and repair protein [Rhizobium etli CIAT 652]
 gi|226737822|sp|B3PXG8|RECF_RHIE6 RecName: Full=DNA replication and repair protein recF
 gi|190695089|gb|ACE89174.1| DNA replication and repair protein [Rhizobium etli CIAT 652]
          Length = 374

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 183/373 (49%), Positives = 258/373 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA++ L  D +H +  G+NG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +E  ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGAAGGFSIFAALDGMEGEVEIGTGIEAGEETTTRKLRINGTPAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL EG FD 
Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ LI E  +   FP   L L+GF+DG+F +  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLARLIEERPESSPFPSASLQLSGFMDGQFSRPS 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L++EYA  L + R  D+ + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ 
Sbjct: 241 VDLEDEYAAMLAESRYRDASAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L +
Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDQTMFSALAD 360

Query: 361 TAKFMRISNHQAL 373
            A+F  +++ +  
Sbjct: 361 RAQFFTVADGKVF 373


>gi|327192780|gb|EGE59709.1| DNA replication and repair protein [Rhizobium etli CNPAF512]
          Length = 442

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 182/373 (48%), Positives = 258/373 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA++ L  D +H +  G+NG GKTN++EA+S LSPGRG RRA+
Sbjct: 69  MPHKVSLSRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAA 128

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++G+EG  +I   +E  ++ + R L+IN    +  DEL  HL
Sbjct: 129 YGDITRVGAAGGFSIFAALDGIEGEVEIGTGIEAGEETTTRKLRINGTPAKTADELTDHL 188

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL EG FD 
Sbjct: 189 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 248

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ LI E  +   FP   L L+GF+DG+F +  
Sbjct: 249 SWLAGIEEQMASLGIAMALARQEMLGLLARLIEERPESSPFPSASLQLSGFMDGQFSRPS 308

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L++EYA  L + R  D+ + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ 
Sbjct: 309 VDLEDEYAAMLAESRYRDASAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 368

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L +
Sbjct: 369 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDQTMFSALAD 428

Query: 361 TAKFMRISNHQAL 373
            A+F  +++ +  
Sbjct: 429 RAQFFTVADGKVF 441


>gi|116249915|ref|YP_765753.1| recombination protein F [Rhizobium leguminosarum bv. viciae 3841]
 gi|123262032|sp|Q1MN15|RECF_RHIL3 RecName: Full=DNA replication and repair protein recF
 gi|115254563|emb|CAK05637.1| putative DNA replication and repair protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 374

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 184/373 (49%), Positives = 258/373 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA+  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYAAAALALDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +ET ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGAAGGFSIFAALDGMEGDVEIGTGIETGEETTARKLRINGTTAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL EG FD 
Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ LI E  +   FP   L L+GF+DG+F +  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIEETRETSPFPSASLQLSGFMDGQFSRPS 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+++YA  L + R  D+ + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ 
Sbjct: 241 VDLEDDYAAMLAESRYRDAGAGRTLEGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L +
Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRAMFSALGD 360

Query: 361 TAKFMRISNHQAL 373
            A+F  +++ +  
Sbjct: 361 KAQFFTVADGRVF 373


>gi|86355801|ref|YP_467693.1| recombination protein F [Rhizobium etli CFN 42]
 gi|123738428|sp|Q2KDX0|RECF_RHIEC RecName: Full=DNA replication and repair protein recF
 gi|86279903|gb|ABC88966.1| DNA replication and repair protein [Rhizobium etli CFN 42]
          Length = 374

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 181/373 (48%), Positives = 258/373 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA+  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYAAASLSLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +E  ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGAAGGFSIFAALDGMEGEVEIGTGIEAGEETTARRLRINGTPAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL+P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL +G FD 
Sbjct: 121 RLLWLIPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDDGRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ L  E ++   FP   L L+GF+DG+F +  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLTEETLESSPFPSASLQLSGFMDGQFSRPS 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+++Y   L + R  D+ + RTL GPHR+DL+V + +KA+  A  STGEQK +LVG+ 
Sbjct: 241 VDLEDDYRVMLAESRYRDAGAGRTLEGPHRTDLVVHHREKAMEAARCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE++R ALF I+  +G Q FMTGTD+ +F +L +
Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDENRRAALFDIIDGLGGQAFMTGTDRGMFTALGD 360

Query: 361 TAKFMRISNHQAL 373
            A+F  +++ +  
Sbjct: 361 RAQFFTVADGRVF 373


>gi|209551663|ref|YP_002283580.1| recombination protein F [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226737823|sp|B5ZWP8|RECF_RHILW RecName: Full=DNA replication and repair protein recF
 gi|209537419|gb|ACI57354.1| DNA replication and repair protein RecF [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 374

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 184/373 (49%), Positives = 257/373 (68%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA+  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYAAAALDLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +ET ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGAAGGFSIFAALDGMEGEVEIGTGIETGEETTARRLRINGTQAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL EG FD 
Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ LI E  +   FP   L L+GF+DG+F +  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIEETRETSPFPSASLQLSGFMDGQFTRPS 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L++EYA  L + R  D+ + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ 
Sbjct: 241 VDLEDEYAAMLSESRYRDAGAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L +
Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRAMFSALGD 360

Query: 361 TAKFMRISNHQAL 373
            A+   +++ +  
Sbjct: 361 RAQVFTVADGKIF 373


>gi|241207093|ref|YP_002978189.1| recombination protein F [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860983|gb|ACS58650.1| DNA replication and repair protein RecF [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 374

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 185/373 (49%), Positives = 258/373 (69%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA+  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYAAAALTLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +ET ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGAAGGFSIFAALDGMEGDVEIGTGIETSEETTARRLRINGTTAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL EG FD 
Sbjct: 121 RLLWLTPAMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ LI E  +   FP   L L+GF+DG+F +  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLIEETRESSPFPSAALQLSGFMDGQFSRPS 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+++YA  L + R  D+ + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ 
Sbjct: 241 VDLEDDYAAMLAESRYRDAGAGRTLEGPHRADLIVHHREKAMEAERCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L +
Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQSFMTGTDRAMFAALGD 360

Query: 361 TAKFMRISNHQAL 373
            A+F  +S+ +  
Sbjct: 361 RAQFFTVSDGRVF 373


>gi|48527207|gb|AAT45744.1| RecF [Rhizobium etli]
          Length = 374

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 180/373 (48%), Positives = 257/373 (68%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA+  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYAAASLSLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y  +TR+G+   FS FA ++GMEG  +I   +E  ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGHITRVGAAGGFSIFAALDGMEGEVEIGTGIEAGEETTARRLRINGTPAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL+P+MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL +G FD 
Sbjct: 121 RLLWLIPAMDGLFTGASSDRRRFLDRLVVSLDPAHGRRASDFERAMRSRNKLLDDGRFDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L+ L  E ++   FP   L L+GF+DG+F +  
Sbjct: 181 SWLAGIEEQMASLGIAMALARQEMLGLLTRLTEETLESSPFPSASLQLSGFMDGQFSRPS 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+++Y   L + R  D+ + RTL GPHR+DL+V + +KA+  A  STGEQK +LVG+ 
Sbjct: 241 VDLEDDYRVMLAESRYRDAGAGRTLEGPHRTDLVVHHREKAMEAARCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ N TG APILLLDEI+AHLDE++R ALF I+  +G Q FMTGTD+ +F +L +
Sbjct: 301 LAHARLVGNLTGHAPILLLDEIAAHLDENRRAALFDIIDGLGGQAFMTGTDRGMFTALGD 360

Query: 361 TAKFMRISNHQAL 373
            A+F  +++ +  
Sbjct: 361 RAQFFTVADGRVF 373


>gi|13474646|ref|NP_106215.1| recombination protein F [Mesorhizobium loti MAFF303099]
 gi|20978640|sp|Q98BH1|RECF_RHILO RecName: Full=DNA replication and repair protein recF
 gi|14025401|dbj|BAB52001.1| RecF protein [Mesorhizobium loti MAFF303099]
          Length = 379

 Score =  380 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 167/373 (44%), Positives = 233/373 (62%), Gaps = 1/373 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  +  I  L ++ FRNYA+L +       +F GDNG GKTN+LEAIS L+PGRG RRA 
Sbjct: 1   MPAQTHISKLTLTNFRNYAALAIDLAPGAVVFSGDNGAGKTNLLEAISLLTPGRGLRRAP 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R G    F+  AR++G +G  +I   +   +    R ++IN    R  +++ + L
Sbjct: 61  YADVAREGGDGGFALHARLDGPDGQVEIGTGISVGEGEGGRRVRINGATARSAEDMLEWL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G + +RRRFLDR+V AIDP H +R +D+E+ MRGRNRLLT+G  D 
Sbjct: 121 RVVWLTPAMDALFTGPAADRRRFLDRLVLAIDPGHGQRALDYEKAMRGRNRLLTDGSRDD 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            W  +IE QMAE GV I  AR E++  L+++I        FP   +SL+G L+ +   + 
Sbjct: 181 RWFEAIETQMAETGVAIAAARAELVRLLAAMIDRLPDTGPFPQADISLSGDLEAEVSSAP 240

Query: 241 C-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++E + + L  GR  D  + RTL GPHRSDL+V +  KA+     STGEQK +LVGI
Sbjct: 241 AVDVEERFRRALAGGRDRDRAAGRTLEGPHRSDLLVRHRPKAMPAELCSTGEQKALLVGI 300

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L+HARL    +G  PILLLDEI+AHLD  +R ALF I+ ++  Q FMTGTD ++F SL 
Sbjct: 301 VLSHARLTGEMSGMTPILLLDEIAAHLDGGRRAALFSILEELNCQAFMTGTDAALFSSLM 360

Query: 360 ETAKFMRISNHQA 372
             A+F+ + +   
Sbjct: 361 GRAQFLTVDHGTV 373


>gi|218515494|ref|ZP_03512334.1| recombination protein F [Rhizobium etli 8C-3]
          Length = 367

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 182/366 (49%), Positives = 253/366 (69%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
             L +++FRNYA++ L  D +H +  G+NG GKTN++EA+S LSPGRG RRA+Y D+TR+
Sbjct: 1   SRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAAYGDITRV 60

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
           G+   FS FA ++GMEG  +I   +E  ++ + R L+IN    +  DEL  HLR+ WL P
Sbjct: 61  GAAGGFSIFAALDGMEGEVEIGTGIEAGEETTTRKLRINGKPAKTADELTDHLRLLWLTP 120

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
           +MD +F+G S +RRRFLDR+V ++DP H RR  DFER MR RN+LL EG FD SW + IE
Sbjct: 121 AMDGLFTGASSDRRRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDPSWLAGIE 180

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            QMA LG+ + +AR EM+  L+ LI E  +   FP   L L+GF+DG+F +    L++EY
Sbjct: 181 EQMASLGIAMALARQEMLGLLARLIEERPESSPFPSASLQLSGFMDGQFSRPSVDLEDEY 240

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
           A  L + R  D+ + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ LAHARL+
Sbjct: 241 AAMLAESRYRDASAGRTLDGPHRADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLV 300

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
            N TG APILLLDEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L + A+F  +
Sbjct: 301 GNLTGHAPILLLDEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDQTMFSALADRAQFFTV 360

Query: 368 SNHQAL 373
           ++ +  
Sbjct: 361 ADGKVF 366


>gi|25453250|sp|Q8UJ65|RECF_AGRT5 RecName: Full=DNA replication and repair protein recF
          Length = 376

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 187/373 (50%), Positives = 253/373 (67%), Gaps = 1/373 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           MTN++ +  L +++FRNYA+  LV D +H +  GDNG GKTN+LEA+SFLSPGRG RRA 
Sbjct: 2   MTNKVSLSRLKLTDFRNYAAAALVLDERHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAV 61

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +DVTR+G+ +  FS FA V+GM+G   I   +E   +   R L++N   ++ VDEL  H
Sbjct: 62  LSDVTRVGAEATGFSIFADVDGMDGEVAIGTGIEGDGEVVSRRLRLNGTPVKSVDELTDH 121

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           LR+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFE+ MRGRNRLL+EG FD
Sbjct: 122 LRVLWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPGHGRRASDFEKAMRGRNRLLSEGRFD 181

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
             W   IE QMAELG+ + +AR EM+  L +LI        FP   LSL GF+D + ++ 
Sbjct: 182 PVWLDGIEKQMAELGISMAVARYEMLGLLKTLIEGRAGNAAFPSATLSLAGFMDDRLNRP 241

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L++EY   L DGR  D+ + RTL GPHR DL V + +K +     STGEQK +LVG+
Sbjct: 242 AVDLEDEYGLMLRDGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGL 301

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHA+L +N TG+AP+LLLDEI+AHLDE +R ALF ++  +G Q FMTGTD ++F +L 
Sbjct: 302 VLAHAQLTANMTGYAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALG 361

Query: 360 ETAKFMRISNHQA 372
           E A+F  +S+   
Sbjct: 362 ERAQFFNVSHGGI 374


>gi|159184149|ref|NP_353107.2| recombination protein F [Agrobacterium tumefaciens str. C58]
 gi|159139484|gb|AAK85892.2| recF-like protein [Agrobacterium tumefaciens str. C58]
          Length = 375

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 187/373 (50%), Positives = 253/373 (67%), Gaps = 1/373 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           MTN++ +  L +++FRNYA+  LV D +H +  GDNG GKTN+LEA+SFLSPGRG RRA 
Sbjct: 1   MTNKVSLSRLKLTDFRNYAAAALVLDERHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAV 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +DVTR+G+ +  FS FA V+GM+G   I   +E   +   R L++N   ++ VDEL  H
Sbjct: 61  LSDVTRVGAEATGFSIFADVDGMDGEVAIGTGIEGDGEVVSRRLRLNGTPVKSVDELTDH 120

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           LR+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFE+ MRGRNRLL+EG FD
Sbjct: 121 LRVLWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPGHGRRASDFEKAMRGRNRLLSEGRFD 180

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
             W   IE QMAELG+ + +AR EM+  L +LI        FP   LSL GF+D + ++ 
Sbjct: 181 PVWLDGIEKQMAELGISMAVARYEMLGLLKTLIEGRAGNAAFPSATLSLAGFMDDRLNRP 240

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L++EY   L DGR  D+ + RTL GPHR DL V + +K +     STGEQK +LVG+
Sbjct: 241 AVDLEDEYGLMLRDGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGL 300

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHA+L +N TG+AP+LLLDEI+AHLDE +R ALF ++  +G Q FMTGTD ++F +L 
Sbjct: 301 VLAHAQLTANMTGYAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALG 360

Query: 360 ETAKFMRISNHQA 372
           E A+F  +S+   
Sbjct: 361 ERAQFFNVSHGGI 373


>gi|319779752|ref|YP_004139228.1| DNA replication and repair protein RecF [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317165640|gb|ADV09178.1| DNA replication and repair protein RecF [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 381

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 170/375 (45%), Positives = 234/375 (62%), Gaps = 3/375 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  +  I  L ++ FRNYA+L +       +F GDNG GKTN+LEAISFL+PGRG RRA 
Sbjct: 1   MPAQNHISKLTLTNFRNYAALTIDLAPGAVVFSGDNGAGKTNLLEAISFLTPGRGLRRAP 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD--DRSVRCLQINDVVIRVVDELNK 118
           YADV R G    F+  AR++G +G  +I   +   D      R ++IN    R  +++ +
Sbjct: 61  YADVAREGGDGGFALHARLDGPDGQVEIGTGISGGDTAGEGGRRVRINGASARSAEDMLE 120

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            LR+ WL P+MD +F+G + +RRRFLDR+V AIDP H +R ID+E+ MRGRNRLLTE   
Sbjct: 121 WLRVVWLTPAMDALFTGPAADRRRFLDRLVLAIDPGHGQRAIDYEKAMRGRNRLLTESSR 180

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D  W  +IE QMAE GV I  AR EM+  L+++I        FP   + L+G L+ +   
Sbjct: 181 DDRWFDAIETQMAETGVAIAAARAEMVRLLAAMIDRLPDTGPFPQADIGLSGELEAEIAV 240

Query: 239 SFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    ++E + + L +GR+ D  + RTL GPHRSDL+V +  KA+     STGEQK +LV
Sbjct: 241 APAVDVEERFRRTLAEGRERDRAAGRTLDGPHRSDLVVRHRPKAMPAELCSTGEQKALLV 300

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           GI L+HARL    +G  PILLLDEI+AHLD  +R ALF I+ ++  Q FMTGTD ++F S
Sbjct: 301 GIVLSHARLTGEMSGMTPILLLDEIAAHLDSGRRAALFSILEELNCQAFMTGTDAALFSS 360

Query: 358 LNETAKFMRISNHQA 372
           L   A+F+ + +   
Sbjct: 361 LQGRAQFLTVDHGTV 375


>gi|260461963|ref|ZP_05810208.1| DNA replication and repair protein RecF [Mesorhizobium
           opportunistum WSM2075]
 gi|259032210|gb|EEW33476.1| DNA replication and repair protein RecF [Mesorhizobium
           opportunistum WSM2075]
          Length = 377

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 170/371 (45%), Positives = 231/371 (62%), Gaps = 1/371 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  +  I  L ++ FRNYA+L +       +F GDNG GKTN+LEAISFL+PGRG RRA 
Sbjct: 1   MPGQTHISKLTLTNFRNYAALAIDLAPGAVVFSGDNGAGKTNLLEAISFLTPGRGLRRAP 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R G    F+  AR++G +G  +I   +   D    R ++IN    R  +++ + L
Sbjct: 61  YADVARAGGDGGFALHARLDGPDGQVEIGTGISGGDSEGGRRVRINGATARSAEDMLEWL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G + +RRRFLDR+V AIDP H +R +D+E+ MRGRNRLLTE   D 
Sbjct: 121 RVVWLTPAMDTLFTGPAADRRRFLDRLVLAIDPGHGQRALDYEKAMRGRNRLLTENSRDD 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
            W  +IE QMAE GV I  AR EM+  L+++I        FP   + L G L+ +     
Sbjct: 181 RWFEAIEIQMAETGVAIAAARAEMVRLLAAMIDRLPDSGPFPQADIGLAGDLEAEIAGTP 240

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++E + + L DGR  D  + RTL GPHRSDL+V +  KA+     STGEQK +LVGI
Sbjct: 241 AVDVEERFRRALADGRDRDRAAGRTLEGPHRSDLLVRHRPKAMPAELCSTGEQKALLVGI 300

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L+HARL    +G  PILLLDEI+AHLD  +R ALF I+ ++  Q FMTGTD ++F SL 
Sbjct: 301 VLSHARLTGEVSGMTPILLLDEIAAHLDGGRRAALFSILEELNCQAFMTGTDAALFSSLQ 360

Query: 360 ETAKFMRISNH 370
             A+F+ + + 
Sbjct: 361 GRAQFLTVDHG 371


>gi|227824004|ref|YP_002827977.1| recombination protein F [Sinorhizobium fredii NGR234]
 gi|227343006|gb|ACP27224.1| DNA replication and repair protein, RecF [Sinorhizobium fredii
           NGR234]
          Length = 470

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 181/372 (48%), Positives = 254/372 (68%), Gaps = 1/372 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA+L L  D +H +  G+NG GKTN++EAISFLSPGRG RRA+
Sbjct: 98  MPHKVSLTRLKLTDFRNYAALSLELDQRHVVLTGENGAGKTNLMEAISFLSPGRGLRRAA 157

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R+G+   FS FA VEGM+G  +I       ++   R L++N    R VDEL  HL
Sbjct: 158 YADVARVGATDGFSVFAAVEGMDGPVEIGTGTAGAEEGQSRRLRLNGTPARTVDELTDHL 217

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  +F+R MR RNRLL+E   D 
Sbjct: 218 RVLWLTPAMDGLFTGPSSDRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 277

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W ++IE +MA LGV + +AR+EM+  L++ ++E  Q  +FP   LSL GFLD       
Sbjct: 278 AWLTAIEREMAGLGVSMALARLEMLGLLTA-LVERSQGGSFPSAGLSLAGFLDDCHGLPA 336

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E Y   L DGR  D+ + RTL GPHRSDL++ + +K +     STGEQK +LVG+ 
Sbjct: 337 YDLEERYLAMLSDGRGRDAAAGRTLDGPHRSDLLIRHREKDMEAERCSTGEQKALLVGLV 396

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF  V ++G Q FMTGTD+++F +L E
Sbjct: 397 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDRVDELGGQAFMTGTDRAMFTALGE 456

Query: 361 TAKFMRISNHQA 372
            A ++ ++N + 
Sbjct: 457 RACYLTVANGRV 468


>gi|325291519|ref|YP_004277383.1| recombination protein F [Agrobacterium sp. H13-3]
 gi|325059372|gb|ADY63063.1| recombination protein F [Agrobacterium sp. H13-3]
          Length = 375

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 184/373 (49%), Positives = 252/373 (67%), Gaps = 1/373 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           MTN++ +  L +++FRNYA+  L  D +H +  GDNG GKTN+LEA+SFLSPGRG RRA+
Sbjct: 1   MTNKVSLLRLKLTDFRNYAAASLALDDRHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAT 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +DVTR+G+ +  FS FA V+GM+G   I   +E   +   R L++N   ++ VDEL  H
Sbjct: 61  LSDVTRVGAEAAGFSIFADVDGMDGEVAIGTGIEGDGEVVSRRLRLNGTSVKSVDELTDH 120

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           LR+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  DFE+ MRGRNRLL+EG FD
Sbjct: 121 LRVLWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPAHGRRASDFEKAMRGRNRLLSEGRFD 180

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
             W   IE QMAELG+ + +AR EM+  L SLI        FP   L+L+GF+D   ++ 
Sbjct: 181 PVWLDGIEKQMAELGISMALARYEMLGLLKSLIEGRSGNAAFPSAALALSGFMDDTLNRP 240

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L++EY   L +GR  D+ + RTL GPHR DL V + +K +     STGEQK +LVG+
Sbjct: 241 AVDLEDEYRLTLREGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGL 300

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHA+L +N TG AP+LLLDEI+AHLDE +R ALF ++  +G Q FMTGTD ++F +L 
Sbjct: 301 VLAHAQLTANMTGHAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALG 360

Query: 360 ETAKFMRISNHQA 372
           + A+F  +S+   
Sbjct: 361 DRAQFFNVSHGGI 373


>gi|15963941|ref|NP_384294.1| recombination protein F [Sinorhizobium meliloti 1021]
 gi|307306353|ref|ZP_07586097.1| DNA replication and repair protein RecF [Sinorhizobium meliloti
           BL225C]
 gi|8475781|sp|P56903|RECF_RHIME RecName: Full=DNA replication and repair protein recF
 gi|15073116|emb|CAC41575.1| DNA repair protein [Sinorhizobium meliloti 1021]
 gi|306902195|gb|EFN32792.1| DNA replication and repair protein RecF [Sinorhizobium meliloti
           BL225C]
          Length = 374

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/372 (49%), Positives = 253/372 (68%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +S+FRNYA+L L  D +H +  G+NG GKTN++E +SFLSPGRG RRA+
Sbjct: 1   MPHKVFLTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R+G+P  FS FA V+GMEG  +I    +  ++   R L+IN    R VDEL  HL
Sbjct: 61  YADVARVGAPDGFSVFAAVDGMEGSVEIGTGTQGTEEGQSRRLRINGTAARTVDELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  +F+R MR RNRLL+E   D 
Sbjct: 121 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W S+IE +MA LG+ + +AR EM+  LS+L+        FP   LSL GFLD       
Sbjct: 181 AWLSAIEREMAGLGISMALARQEMLGLLSALVERSRSDGTFPSASLSLAGFLDDCAGIPA 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E Y   L +GR  D+ + RTL GPHRSDL++ + +K I     STGEQK +LVG+ 
Sbjct: 241 FELEERYLAMLAEGRARDAAAGRTLDGPHRSDLLIRHREKDIEAERCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF +V  +G Q FMTGTD+++FD+L E
Sbjct: 301 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDLVDGLGGQSFMTGTDRAMFDALGE 360

Query: 361 TAKFMRISNHQA 372
            A+++ ++N + 
Sbjct: 361 RAQYLAVANGRV 372


>gi|307319240|ref|ZP_07598669.1| DNA replication and repair protein RecF [Sinorhizobium meliloti
           AK83]
 gi|306895076|gb|EFN25833.1| DNA replication and repair protein RecF [Sinorhizobium meliloti
           AK83]
          Length = 374

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 183/372 (49%), Positives = 253/372 (68%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +S+FRNYA+L L  D +H +  G+NG GKTN++E +SFLSPGRG RRA+
Sbjct: 1   MPHKVFLTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R+G+P  FS FA V+GMEG  +I    +  ++   R L+IN    R VDEL  HL
Sbjct: 61  YADVARVGAPDGFSVFAAVDGMEGSVEIGTGTQGTEEGQSRRLRINGTAARTVDELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  +F+R MR RNRLL+E   D 
Sbjct: 121 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W S+IE +MA LG+ + +AR EM+  LS+L+        FP   LSL GFLD       
Sbjct: 181 AWLSAIEREMAGLGISMALARQEMLGLLSALVERSRSDGTFPSASLSLAGFLDDGAGIPA 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E Y   L +GR  D+ + RTL GPHRSDL++ + +K I     STGEQK +LVG+ 
Sbjct: 241 FELEERYLAMLAEGRARDAAAGRTLDGPHRSDLLIRHREKDIEAERCSTGEQKALLVGLV 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF +V  +G Q FMTGTD+++FD+L E
Sbjct: 301 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDLVDGLGGQSFMTGTDRAMFDALGE 360

Query: 361 TAKFMRISNHQA 372
            A+++ ++N + 
Sbjct: 361 RAQYLAVANGRV 372


>gi|163757765|ref|ZP_02164854.1| putative DNA replication and repair protein [Hoeflea phototrophica
           DFL-43]
 gi|162285267|gb|EDQ35549.1| putative DNA replication and repair protein [Hoeflea phototrophica
           DFL-43]
          Length = 382

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 172/374 (45%), Positives = 245/374 (65%), Gaps = 2/374 (0%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ I+ L ++ FRNYAS  L  DA+H + VGDNG GKTN++EA+S LSPGRG RRA 
Sbjct: 1   MAQKVHIERLKLTGFRNYASQSLELDARHVVLVGDNGAGKTNLMEAVSLLSPGRGMRRAP 60

Query: 61  YADVTRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           Y+DV + GS   S FS FA +EGM G  DI   ++  ++   R ++IN    R  D++ +
Sbjct: 61  YSDVIKAGSEPASGFSIFASLEGMAGPVDIGTGVDGLEESGARKVRINGSPARSADDMLE 120

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           HLR+ WL PSMD +F+G + +RRRFLDR+V ++DP H  R + +ER MR RNRLL+EG  
Sbjct: 121 HLRLLWLTPSMDGLFTGSAGDRRRFLDRLVLSVDPAHGSRALSYERAMRSRNRLLSEGRA 180

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D +W   +EAQM+ELGV + +AR E++  LS+LI +   +  FP   + L GFL+ +  +
Sbjct: 181 DPTWLDGLEAQMSELGVAMAMARSEVVRLLSALIDDSQAESPFPAASVRLEGFLEDEGLE 240

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   ++  +   +  GR  D+ + RTL GPHR DL+V +  KA+  A  STGEQK +L+G
Sbjct: 241 TASDMEVAFIDLMKHGRGRDAAAGRTLSGPHRMDLVVHHRAKAMPAALSSTGEQKALLIG 300

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           I L HA+L+ + TG APILLLDE++AHLDE +R ALF ++  +  Q FMTGTD ++F SL
Sbjct: 301 IILGHAQLVRSLTGHAPILLLDEVAAHLDEGRRAALFDLIETLDCQAFMTGTDAAMFGSL 360

Query: 359 NETAKFMRISNHQA 372
               +   +S  +A
Sbjct: 361 GPRGQMFEVSEGRA 374


>gi|288906437|ref|YP_003431659.1| recombination protein RecF [Streptococcus gallolyticus UCN34]
 gi|306832474|ref|ZP_07465626.1| recombination protein F [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325979499|ref|YP_004289215.1| DNA replication and repair protein recF [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288733163|emb|CBI14744.1| recombination protein RecF [Streptococcus gallolyticus UCN34]
 gi|304425374|gb|EFM28494.1| recombination protein F [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325179427|emb|CBZ49471.1| DNA replication and repair protein recF [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 364

 Score =  364 bits (936), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  +RNY +  L F     +F+G N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +         V G+   +  ++ L+       R  ++N +    + +    + +  
Sbjct: 61  IHFDAKELL-----VSGILQRSSGTVPLDISLSSKGRVTKVNHLKQAKLSDYIGVMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D+ + 
Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQRNTYLKTAEKVDTDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A+ G ++   R++ I+ L      Y    +     LS+       F Q    +
Sbjct: 176 AVLDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGVEHLSIHYLSSVSF-QEKDDI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           K  + K L    + D   + T +GPHR DL     D  +    GS G+ + +++ + +A 
Sbjct: 235 KPNFLKALQKNHQRDIFKKNTSVGPHRDDLEFFIND--MPANFGSQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   TG  PILLLD++ + LD  ++  L +++ D   Q F+T T       L +  K
Sbjct: 293 IELIKTVTGDYPILLLDDVMSELDNYRQTELLKMIIDKNVQTFITTTSLDHLSQLPDELK 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFTVNQGNI 361


>gi|306834588|ref|ZP_07467701.1| recombination protein F [Streptococcus bovis ATCC 700338]
 gi|304423390|gb|EFM26543.1| recombination protein F [Streptococcus bovis ATCC 700338]
          Length = 364

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 162/369 (43%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  +RNY +  L F     +F+G N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +         V G+   +  ++ L+       R  ++N +    + +    + +  
Sbjct: 61  IHFDAKELL-----VSGILQRSSGTVPLDISLSSKGRVTKVNHLKQAKLSDYIGVMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D+ + 
Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQRNTYLKTAEKVDTDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A+ G ++   R++ I+ L      Y    +     LS+       F Q    +
Sbjct: 176 AVLDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGIEHLSIHYLSSVSF-QEKDDI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           K  + K L   ++ D   + T +GPHR DL     D  +    GS G+ + +++ + +A 
Sbjct: 235 KPNFLKALQKNQQRDIFKKNTSVGPHRDDLEFFIND--MPANFGSQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   TG  PILLLD++ + LD  ++  L +++ D   Q F+T T       L +  K
Sbjct: 293 IELIRTVTGDYPILLLDDVMSELDNYRQTELLKMIIDKNVQTFITTTSLDHLSQLPDDLK 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFTVNQGNI 361


>gi|228994211|ref|ZP_04154111.1| DNA replication and repair protein recF [Bacillus pseudomycoides
           DSM 12442]
 gi|228765663|gb|EEM14317.1| DNA replication and repair protein recF [Bacillus pseudomycoides
           DSM 12442]
          Length = 375

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 167/377 (44%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MYIKELQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         + +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----YGKIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQRLSQYIGEMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL     DK + +  GS G+Q+   + 
Sbjct: 236 GLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNDKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKQAKTIHVTNGTVDC 370


>gi|228995400|ref|ZP_04155072.1| DNA replication and repair protein recF [Bacillus mycoides
           Rock3-17]
 gi|229003014|ref|ZP_04160873.1| DNA replication and repair protein recF [Bacillus mycoides Rock1-4]
 gi|228758242|gb|EEM07428.1| DNA replication and repair protein recF [Bacillus mycoides Rock1-4]
 gi|228764353|gb|EEM13228.1| DNA replication and repair protein recF [Bacillus mycoides
           Rock3-17]
          Length = 375

 Score =  363 bits (932), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 167/377 (44%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MYIKELQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         + +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----YGKIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQRLSQYIGEMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL     DK + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNDKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKQAKTIHVTNGTVDC 370


>gi|312866766|ref|ZP_07726979.1| DNA replication and repair protein RecF [Streptococcus
           parasanguinis F0405]
 gi|311097549|gb|EFQ55780.1| DNA replication and repair protein RecF [Streptococcus
           parasanguinis F0405]
          Length = 364

 Score =  360 bits (925), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 160/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L+I  FRNY  L + F     IF+G N  GKTNILE+I FL+  R  R  +  D+
Sbjct: 1   MWLKQLSIQHFRNYQELEVEFHPGLNIFLGQNAQGKTNILESIYFLALTRSHRTRNDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S  F     +V G        + LE       R  ++N +    +     H+ +  
Sbjct: 61  IYFESTDF-----KVSGQLQRETGPLPLEISLTPKGRITKVNHLKQAKLSNYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
             P   ++  G    RR+F+D  +  + P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLIKGSPAGRRKFIDIELGQMKPLYLSDLSQYNHVLKQRNSYLKNSEKIDATFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +++Q+A  G ++   R+E I  L +   E   + +     LS+       F +    +
Sbjct: 176 EVLDSQLASFGSRVIHHRLEFIKKLEAKAEEKHTRLSDNKEDLSIQYQ-STVFSEEGNDI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E++   L   R+ D   + T IGPHR DL     +       GS G+ + V++ + LA 
Sbjct: 235 EEQFLSMLEKNRQKDIFRKTTSIGPHRDDLAFFINNMN--ATFGSQGQHRSVVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   T   PILLLD++ + LD  ++  L   +++   Q F+T T       L E  K
Sbjct: 293 IELMEEITREKPILLLDDVMSELDNYRQLQLLETISN-NIQTFITTTTLDHLKDLPEELK 351

Query: 364 FMRISNHQA 372
              +     
Sbjct: 352 IFTVQAGHI 360


>gi|15612567|ref|NP_240870.1| recombination protein F [Bacillus halodurans C-125]
 gi|13959499|sp|Q9RC99|RECF_BACHD RecName: Full=DNA replication and repair protein recF
 gi|5672650|dbj|BAA82688.1| 63%-identity [Bacillus halodurans]
 gi|10172616|dbj|BAB03723.1| DNA repair and genetic recombination [Bacillus halodurans C-125]
          Length = 371

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 167/372 (44%), Gaps = 13/372 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L + +FRNY  L + F+    + +G+N  GKTN++EAI FL+  +  R A   ++
Sbjct: 1   MHIERLTLKQFRNYDELDVSFEPNVNVIIGENAQGKTNVIEAIYFLALAKSHRTARDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +P     FAR+EG     +  + L        + +++N +  R + +    + +  
Sbjct: 61  IQWEAP-----FARIEGAFQKQNGPLSLHVVLSGKGKKVKVNGLEQRRLSDYIGAVNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    +  G    RRRFLD  +  + P +  ++  +++++  RN LL +         
Sbjct: 116 FGPEDLNLVKGSPQIRRRFLDMELGQMSPVYLHQLAMYQKILLQRNHLLKQLFGKANSDP 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--S 239
               +  Q+ E+ V++   R E I  L     E  Q  +    KL +T        +  +
Sbjct: 176 MLDVLTDQLIEVAVEVTKKRFEFIQLLQRWAEEIHQAISRGKEKLVITYEPSVHVSEQLN 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L+E + +     ++ +     TL GPHR DL+    DK +   +GS G+Q+   + +
Sbjct: 236 LSKLREGFYQAYEQKKERERQRGTTLFGPHRDDLVFFVNDKDV-QTYGSQGQQRTTALSL 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358
            LA   L+  T G  PILLLD++ + LD+ +++ L   +     Q F+T T+    D   
Sbjct: 295 KLAEIELMKETVGDYPILLLDDVLSELDDYRQSHLLHAIQH-RVQTFVTTTNVDGIDHQT 353

Query: 359 NETAKFMRISNH 370
            + A    +   
Sbjct: 354 LQEATIYEVEQG 365


>gi|228942641|ref|ZP_04105173.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228975571|ref|ZP_04136123.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982207|ref|ZP_04142496.1| DNA replication and repair protein recF [Bacillus thuringiensis
           Bt407]
 gi|228777559|gb|EEM25837.1| DNA replication and repair protein recF [Bacillus thuringiensis
           Bt407]
 gi|228784181|gb|EEM32208.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817067|gb|EEM63160.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326937801|gb|AEA13697.1| recombination protein F [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 375

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDEE-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKDAKTIHVTNGTVDC 370


>gi|196036149|ref|ZP_03103549.1| DNA replication and repair protein RecF [Bacillus cereus W]
 gi|195991316|gb|EDX55284.1| DNA replication and repair protein RecF [Bacillus cereus W]
          Length = 375

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     D S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRDSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|222147250|ref|YP_002548207.1| recombination protein F [Agrobacterium vitis S4]
 gi|259563353|sp|B9JZ91|RECF_AGRVS RecName: Full=DNA replication and repair protein recF
 gi|221734240|gb|ACM35203.1| DNA replication and repair protein [Agrobacterium vitis S4]
          Length = 374

 Score =  360 bits (925), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 184/370 (49%), Positives = 248/370 (67%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  +  I  L +++FRNY S  L  D +H +  G+NG GKTN++EA+SFLSPGRG RRA 
Sbjct: 1   MAEKTFINRLQLTDFRNYGSASLRLDGRHVVLTGNNGSGKTNLMEAVSFLSPGRGLRRAV 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            +DV R G+ S FS FA +EGM G  ++    E  D+ +VR L+IN   +R VDEL  HL
Sbjct: 61  LSDVARAGAASGFSIFASLEGMAGDVELGTGSEVLDETAVRRLRINGASVRSVDELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S ERRRFLDR+V +IDP+H RR  DFER MR RN+LL+EG FD+
Sbjct: 121 RVLWLTPAMDGLFTGSSSERRRFLDRLVLSIDPQHGRRASDFERAMRSRNKLLSEGRFDA 180

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW + IE QMA LG+ + +AR EM+  L++LI +  + E FP   L L+GF+D     + 
Sbjct: 181 SWLAGIEQQMAALGIAMALARQEMMRLLAALIEQRREPETFPGADLMLSGFMDEHAGTAA 240

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L++ Y   L   R  D+ + RTL GPHRSDL+V + +K +     STGEQK +L+G+ 
Sbjct: 241 IDLEDTYRDSLAGSRGRDAAAGRTLEGPHRSDLLVRHREKDMEAERCSTGEQKALLIGLI 300

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHA L++  TGFAPILLLDEI+AHLDE +R ALF  +  +G Q FMTGTD  +F SL +
Sbjct: 301 LAHAELVATMTGFAPILLLDEIAAHLDEGRRAALFDRIDVLGGQAFMTGTDAQMFASLGD 360

Query: 361 TAKFMRISNH 370
            A+F+ + + 
Sbjct: 361 RAQFVTVDDG 370


>gi|75761790|ref|ZP_00741725.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218895145|ref|YP_002443556.1| DNA replication and repair protein RecF [Bacillus cereus G9842]
 gi|228905436|ref|ZP_04069391.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL
           4222]
 gi|228968645|ref|ZP_04129628.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|226737769|sp|B7IS23|RECF_BACC2 RecName: Full=DNA replication and repair protein recF
 gi|74490723|gb|EAO54004.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218546019|gb|ACK98413.1| DNA replication and repair protein RecF [Bacillus cereus G9842]
 gi|228791074|gb|EEM38692.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228854256|gb|EEM98959.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL
           4222]
          Length = 375

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDEE-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKDAKTIHVTNGTVDC 370


>gi|163938017|ref|YP_001642901.1| recombination protein F [Bacillus weihenstephanensis KBAB4]
 gi|229136318|ref|ZP_04265065.1| DNA replication and repair protein recF [Bacillus cereus
           BDRD-ST196]
 gi|226737772|sp|A9VM93|RECF_BACWK RecName: Full=DNA replication and repair protein recF
 gi|163860214|gb|ABY41273.1| DNA replication and repair protein RecF [Bacillus
           weihenstephanensis KBAB4]
 gi|228647190|gb|EEL03278.1| DNA replication and repair protein recF [Bacillus cereus
           BDRD-ST196]
          Length = 375

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 164/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +  ++G     + SI LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----YGNIKGRLQRRNSSISLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TL+GPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVEGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|30018282|ref|NP_829913.1| recombination protein F [Bacillus cereus ATCC 14579]
 gi|218232841|ref|YP_002364859.1| recombination protein F [Bacillus cereus B4264]
 gi|228955742|ref|ZP_04117737.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229051161|ref|ZP_04194705.1| DNA replication and repair protein recF [Bacillus cereus AH676]
 gi|229072957|ref|ZP_04206153.1| DNA replication and repair protein recF [Bacillus cereus F65185]
 gi|229112905|ref|ZP_04242436.1| DNA replication and repair protein recF [Bacillus cereus Rock1-15]
 gi|229130738|ref|ZP_04259691.1| DNA replication and repair protein recF [Bacillus cereus BDRD-Cer4]
 gi|229148042|ref|ZP_04276381.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST24]
 gi|229153651|ref|ZP_04281827.1| DNA replication and repair protein recF [Bacillus cereus m1550]
 gi|229181738|ref|ZP_04309061.1| DNA replication and repair protein recF [Bacillus cereus 172560W]
 gi|229193743|ref|ZP_04320684.1| DNA replication and repair protein recF [Bacillus cereus ATCC
           10876]
 gi|51316395|sp|Q81JD2|RECF_BACCR RecName: Full=DNA replication and repair protein recF
 gi|226737770|sp|B7HIH7|RECF_BACC4 RecName: Full=DNA replication and repair protein recF
 gi|29893822|gb|AAP07114.1| DNA replication and repair protein recF [Bacillus cereus ATCC
           14579]
 gi|218160798|gb|ACK60790.1| DNA replication and repair protein RecF [Bacillus cereus B4264]
 gi|228589768|gb|EEK47646.1| DNA replication and repair protein recF [Bacillus cereus ATCC
           10876]
 gi|228601771|gb|EEK59269.1| DNA replication and repair protein recF [Bacillus cereus 172560W]
 gi|228629837|gb|EEK86490.1| DNA replication and repair protein recF [Bacillus cereus m1550]
 gi|228635467|gb|EEK91958.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST24]
 gi|228652755|gb|EEL08640.1| DNA replication and repair protein recF [Bacillus cereus BDRD-Cer4]
 gi|228670584|gb|EEL25897.1| DNA replication and repair protein recF [Bacillus cereus Rock1-15]
 gi|228710203|gb|EEL62181.1| DNA replication and repair protein recF [Bacillus cereus F65185]
 gi|228722224|gb|EEL73625.1| DNA replication and repair protein recF [Bacillus cereus AH676]
 gi|228803970|gb|EEM50594.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 375

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|42779085|ref|NP_976332.1| recombination protein F [Bacillus cereus ATCC 10987]
 gi|49477032|ref|YP_034364.1| recombination protein F [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118475782|ref|YP_892933.1| recombination protein F [Bacillus thuringiensis str. Al Hakam]
 gi|196041944|ref|ZP_03109231.1| DNA replication and repair protein RecF [Bacillus cereus
           NVH0597-99]
 gi|196045554|ref|ZP_03112785.1| DNA replication and repair protein RecF [Bacillus cereus 03BB108]
 gi|206975840|ref|ZP_03236751.1| DNA replication and repair protein RecF [Bacillus cereus H3081.97]
 gi|217957585|ref|YP_002336127.1| recombination protein F [Bacillus cereus AH187]
 gi|222093778|ref|YP_002527825.1| recombination protein f [Bacillus cereus Q1]
 gi|225862061|ref|YP_002747439.1| DNA replication and repair protein RecF [Bacillus cereus 03BB102]
 gi|228918104|ref|ZP_04081632.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228930498|ref|ZP_04093498.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228931510|ref|ZP_04094420.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228988721|ref|ZP_04148806.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229124995|ref|ZP_04254169.1| DNA replication and repair protein recF [Bacillus cereus 95/8201]
 gi|229142241|ref|ZP_04270765.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST26]
 gi|229187721|ref|ZP_04314857.1| DNA replication and repair protein recF [Bacillus cereus BGSC 6E1]
 gi|229199684|ref|ZP_04326327.1| DNA replication and repair protein recF [Bacillus cereus m1293]
 gi|301051745|ref|YP_003789956.1| recombination protein F [Bacillus anthracis CI]
 gi|51316288|sp|Q73FK2|RECF_BACC1 RecName: Full=DNA replication and repair protein recF
 gi|81697025|sp|Q6HQ00|RECF_BACHK RecName: Full=DNA replication and repair protein recF
 gi|166220700|sp|A0R883|RECF_BACAH RecName: Full=DNA replication and repair protein recF
 gi|226737771|sp|B7HPS0|RECF_BACC7 RecName: Full=DNA replication and repair protein recF
 gi|254790462|sp|C1ES11|RECF_BACC3 RecName: Full=DNA replication and repair protein recF
 gi|254790463|sp|B9IYH1|RECF_BACCQ RecName: Full=DNA replication and repair protein recF
 gi|42735000|gb|AAS38940.1| DNA replication and repair protein RecF [Bacillus cereus ATCC
           10987]
 gi|49328588|gb|AAT59234.1| DNA replication and repair protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118415007|gb|ABK83426.1| DNA replication and repair protein RecF [Bacillus thuringiensis
           str. Al Hakam]
 gi|196023761|gb|EDX62437.1| DNA replication and repair protein RecF [Bacillus cereus 03BB108]
 gi|196027199|gb|EDX65819.1| DNA replication and repair protein RecF [Bacillus cereus
           NVH0597-99]
 gi|206745934|gb|EDZ57330.1| DNA replication and repair protein RecF [Bacillus cereus H3081.97]
 gi|217067704|gb|ACJ81954.1| DNA replication and repair protein RecF [Bacillus cereus AH187]
 gi|221237823|gb|ACM10533.1| DNA replication and repair protein [Bacillus cereus Q1]
 gi|225790870|gb|ACO31087.1| DNA replication and repair protein RecF [Bacillus cereus 03BB102]
 gi|228583779|gb|EEK41954.1| DNA replication and repair protein recF [Bacillus cereus m1293]
 gi|228595789|gb|EEK53473.1| DNA replication and repair protein recF [Bacillus cereus BGSC 6E1]
 gi|228641259|gb|EEK97566.1| DNA replication and repair protein recF [Bacillus cereus BDRD-ST26]
 gi|228658496|gb|EEL14162.1| DNA replication and repair protein recF [Bacillus cereus 95/8201]
 gi|228771033|gb|EEM19514.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228828153|gb|EEM73877.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829217|gb|EEM74854.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228841584|gb|EEM86700.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300373914|gb|ADK02818.1| recombination protein F [Bacillus cereus biovar anthracis str. CI]
 gi|324323998|gb|ADY19258.1| recombination protein F [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 375

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|296500842|ref|YP_003662542.1| recombination protein F [Bacillus thuringiensis BMB171]
 gi|296321894|gb|ADH04822.1| recombination protein F [Bacillus thuringiensis BMB171]
          Length = 375

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQQWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|171778593|ref|ZP_02919720.1| hypothetical protein STRINF_00572 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282816|gb|EDT48240.1| hypothetical protein STRINF_00572 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 364

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 160/369 (43%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  +RNY +  L F  +  +F+G N  GKTN LEAI FLS  R  R  S  ++
Sbjct: 1   MWIQKIALKNYRNYLTNELEFSPRLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        RV G+   +  ++ LE       R  ++N +    + +    + +  
Sbjct: 61  IHFQEKEL-----RVSGILQRSSGTVPLEINLSSKGRVTKVNHLKQAKLSDYIGVMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D  + 
Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNTYLKTAEKVDIDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A+ G ++   R++ ++ L      Y    +       +       F Q    +
Sbjct: 176 AVLDEQLADFGSRVMEHRLDFVSNLEKAADRYHYAISNGLEHFKIRYLSSVPF-QEKSEI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE + K L   RK D   + T  GPHR DL     D  +    GS G+ + +++ + +A 
Sbjct: 235 KEYFLKTLEKNRKRDIFKKNTGAGPHRDDLEFFIND--MPANFGSQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI N TG  PILLLD++ + LD  ++  L +++     Q F+T T       L E  K
Sbjct: 293 IELIKNVTGDFPILLLDDVMSELDNYRQTELLKMIIAENVQTFITTTSLEHLSKLPEELK 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFTVNQGTI 361


>gi|229035150|ref|ZP_04189096.1| DNA replication and repair protein recF [Bacillus cereus AH1271]
 gi|228728216|gb|EEL79246.1| DNA replication and repair protein recF [Bacillus cereus AH1271]
          Length = 375

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|152973858|ref|YP_001373375.1| recombination protein F [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189039617|sp|A7GJS2|RECF_BACCN RecName: Full=DNA replication and repair protein recF
 gi|152022610|gb|ABS20380.1| DNA replication and repair protein RecF [Bacillus cytotoxicus NVH
           391-98]
          Length = 373

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 165/375 (44%), Gaps = 12/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEDLNLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         + +++G     + S+ LE    +  +  ++N++  + + +    + +  
Sbjct: 61  IRWDED-----YGKIKGRLQKRNSSVSLELNISKKGKKAKLNELEQQKLSQYIGEMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL   +G  + + 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKAMQGKNEETM 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSF 240
                 Q+ E G KI   R E ++ L        +  +     +++     +D       
Sbjct: 176 LDVFTLQLIEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDL 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + + 
Sbjct: 236 SKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALSLK 294

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359
           LA   LI       PILLLD++ + LD+ +++ L   +     Q F+T T     +    
Sbjct: 295 LAEIELIYAEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHETL 353

Query: 360 ETAKFMRISNHQALC 374
           + AK + + +    C
Sbjct: 354 KKAKTIHVKSGTVDC 368


>gi|228911332|ref|ZP_04075136.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL
           200]
 gi|228848350|gb|EEM93200.1| DNA replication and repair protein recF [Bacillus thuringiensis IBL
           200]
          Length = 375

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 164/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISKIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ + G KI   R E +  L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIDHGAKILQKRFEFLQLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKDAKTIHVTNGTVDC 370


>gi|205371909|ref|ZP_03224729.1| recombination protein F [Bacillus coahuilensis m4-4]
          Length = 372

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 86/378 (22%), Positives = 169/378 (44%), Gaps = 14/378 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L++  +RNY +  L F+ +  +F+G N  GKTNI+E+I  L+  +  R ++  D+
Sbjct: 1   MFIQELSVENYRNYETESLEFENRVNVFLGQNAQGKTNIMESIYVLAMAKSHRTSNDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      +AR++G     + SI LE    +  +  ++N +    + +   ++ +  
Sbjct: 61  IRWDSE-----YARIKGRIQKRNGSIPLELTISKKGKKAKLNHLEQSKLSQYIGNMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    +  G    RRRF+D  +  + P +   +  + ++++ RN  L +       D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFIDMEIGQVSPVYLHDINQYNKILQQRNSYLKQAQQRKKVDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +    +  Q  ++ VKI   R + ++ L           +     + +S    +    DQ
Sbjct: 176 TMLDVLTDQFIQVAVKIVQKRFQFVHLLEEWAKPIHSGISRNLEELTISYKPSVHVSEDQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            +  + E + ++  + R+ +     TL GPHR DL      + +    GS G+Q+   + 
Sbjct: 236 DWSKMIEVFEERTKEVREREKERGVTLFGPHRDDLEFRVNGRDV-QTFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357
           + LA   LI +  G  PILLLD++ + LD+ +++ L   +     Q F+T T     D  
Sbjct: 295 VKLAEIELIHSEIGEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSTEGIDHQ 353

Query: 358 LNETAKFMRISNHQALCI 375
             + A   R+ +   + +
Sbjct: 354 TLKEAATFRVDSGSIIKV 371


>gi|229014659|ref|ZP_04171773.1| DNA replication and repair protein recF [Bacillus mycoides DSM
           2048]
 gi|229065152|ref|ZP_04200445.1| DNA replication and repair protein recF [Bacillus cereus AH603]
 gi|229170196|ref|ZP_04297882.1| DNA replication and repair protein recF [Bacillus cereus AH621]
 gi|228613297|gb|EEK70436.1| DNA replication and repair protein recF [Bacillus cereus AH621]
 gi|228716181|gb|EEL67900.1| DNA replication and repair protein recF [Bacillus cereus AH603]
 gi|228746670|gb|EEL96559.1| DNA replication and repair protein recF [Bacillus mycoides DSM
           2048]
          Length = 375

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 164/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +  ++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----YGNIKGRLQRRNSSVSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TL+GPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVEGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|30260199|ref|NP_842576.1| recombination protein F [Bacillus anthracis str. Ames]
 gi|47525258|ref|YP_016607.1| recombination protein F [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183043|ref|YP_026295.1| recombination protein F [Bacillus anthracis str. Sterne]
 gi|65317472|ref|ZP_00390431.1| COG1195: Recombinational DNA repair ATPase (RecF pathway) [Bacillus
           anthracis str. A2012]
 gi|165873033|ref|ZP_02217654.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0488]
 gi|167635057|ref|ZP_02393374.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0442]
 gi|167641747|ref|ZP_02399990.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0193]
 gi|170689465|ref|ZP_02880655.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0465]
 gi|170707533|ref|ZP_02897986.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0389]
 gi|177655288|ref|ZP_02936842.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0174]
 gi|190569289|ref|ZP_03022183.1| DNA replication and repair protein RecF [Bacillus anthracis
           Tsiankovskii-I]
 gi|218901210|ref|YP_002449044.1| DNA replication and repair protein RecF [Bacillus cereus AH820]
 gi|227812682|ref|YP_002812691.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           CDC 684]
 gi|228949214|ref|ZP_04111482.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229602868|ref|YP_002864661.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0248]
 gi|254687067|ref|ZP_05150925.1| recombination protein F [Bacillus anthracis str. CNEVA-9066]
 gi|254742124|ref|ZP_05199811.1| recombination protein F [Bacillus anthracis str. Kruger B]
 gi|254755966|ref|ZP_05207998.1| recombination protein F [Bacillus anthracis str. Vollum]
 gi|254761354|ref|ZP_05213376.1| recombination protein F [Bacillus anthracis str. Australia 94]
 gi|51316217|sp|Q6I535|RECF_BACAN RecName: Full=DNA replication and repair protein recF
 gi|226737768|sp|B7JJC0|RECF_BACC0 RecName: Full=DNA replication and repair protein recF
 gi|254790460|sp|C3P8P8|RECF_BACAA RecName: Full=DNA replication and repair protein recF
 gi|254790461|sp|C3LIC5|RECF_BACAC RecName: Full=DNA replication and repair protein recF
 gi|30253520|gb|AAP24062.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           Ames]
 gi|47500406|gb|AAT29082.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49176970|gb|AAT52346.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           Sterne]
 gi|164711245|gb|EDR16801.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0488]
 gi|167510301|gb|EDR85704.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0193]
 gi|167529531|gb|EDR92281.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0442]
 gi|170127529|gb|EDS96403.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0389]
 gi|170666567|gb|EDT17340.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0465]
 gi|172080215|gb|EDT65307.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0174]
 gi|190559596|gb|EDV13587.1| DNA replication and repair protein RecF [Bacillus anthracis
           Tsiankovskii-I]
 gi|218536673|gb|ACK89071.1| DNA replication and repair protein RecF [Bacillus cereus AH820]
 gi|227005823|gb|ACP15566.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           CDC 684]
 gi|228810497|gb|EEM56850.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229267276|gb|ACQ48913.1| DNA replication and repair protein RecF [Bacillus anthracis str.
           A0248]
          Length = 375

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|206970379|ref|ZP_03231332.1| DNA replication and repair protein RecF [Bacillus cereus AH1134]
 gi|206734956|gb|EDZ52125.1| DNA replication and repair protein RecF [Bacillus cereus AH1134]
          Length = 375

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNNSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|229094603|ref|ZP_04225670.1| DNA replication and repair protein recF [Bacillus cereus Rock3-42]
 gi|229159053|ref|ZP_04287109.1| DNA replication and repair protein recF [Bacillus cereus ATCC 4342]
 gi|300118806|ref|ZP_07056526.1| recombination protein F [Bacillus cereus SJ1]
 gi|228624472|gb|EEK81243.1| DNA replication and repair protein recF [Bacillus cereus ATCC 4342]
 gi|228688850|gb|EEL42681.1| DNA replication and repair protein recF [Bacillus cereus Rock3-42]
 gi|298723774|gb|EFI64496.1| recombination protein F [Bacillus cereus SJ1]
          Length = 375

 Score =  359 bits (922), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TL+GPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|325698042|gb|EGD39923.1| recombination protein F [Streptococcus sanguinis SK160]
          Length = 364

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 160/371 (43%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTENELV-----VSGILEKKTSKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ E G ++   R++ +  L S   +     +    +L++         Q   +L
Sbjct: 176 TVLDDQLVEYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVKYLSSIPLHQ-IDSL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D+        +    GS G+ + +++ + LA 
Sbjct: 235 EETYCSSLLSNRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD +++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQALC 374
              I   Q + 
Sbjct: 352 IFTIQQGQIIS 362


>gi|52145206|ref|YP_081623.1| recombination protein F [Bacillus cereus E33L]
 gi|81689896|sp|Q63HG4|RECF_BACCZ RecName: Full=DNA replication and repair protein recF
 gi|51978675|gb|AAU20225.1| DNA replication and repair protein [Bacillus cereus E33L]
          Length = 375

 Score =  359 bits (922), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TL+GPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|320547699|ref|ZP_08041984.1| recombination protein F [Streptococcus equinus ATCC 9812]
 gi|320447774|gb|EFW88532.1| recombination protein F [Streptococcus equinus ATCC 9812]
          Length = 364

 Score =  359 bits (921), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 157/369 (42%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  +RNY +  L F     +F+G N  GKTN LEAI FLS  R  R     ++
Sbjct: 1   MWIQKIALKNYRNYLNNELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRLDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G    +  ++ LE       R  +IN +    + +    + +  
Sbjct: 61  IHFQEKEL-----HVSGNLQRSTGAVPLEIDLSSKGRVTKINHLKQAKLSDYIGVMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D  + 
Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNTYLKTAEKVDIDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A+ G ++   R++ I  L      Y    +     L +       FD+    +
Sbjct: 176 AVLDEQLADFGSRVMEHRLDFIANLEKEADCYHYTISDGLEHLKIHYLSSVPFDK-KSDI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE++ K L    K D   + T  GPHR DL     D  +    GS G+ + +++ + +A 
Sbjct: 235 KEQFLKTLERNHKRDIFKKNTGAGPHRDDLEFFIND--MPANFGSQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI N TG  PILLLD++ + LD  ++  L +++     Q F+T T       L +  K
Sbjct: 293 IELIKNVTGDYPILLLDDVMSELDNYRQTELLKMIIAKNVQTFITTTSLEHLSQLPKELK 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFTVTKGHI 361


>gi|229176168|ref|ZP_04303660.1| DNA replication and repair protein recF [Bacillus cereus MM3]
 gi|228607327|gb|EEK64657.1| DNA replication and repair protein recF [Bacillus cereus MM3]
          Length = 375

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|254724150|ref|ZP_05185935.1| recombination protein F [Bacillus anthracis str. A1055]
          Length = 375

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFLGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|150398584|ref|YP_001329051.1| recombination protein F [Sinorhizobium medicae WSM419]
 gi|150030099|gb|ABR62216.1| DNA replication and repair protein RecF [Sinorhizobium medicae
           WSM419]
          Length = 409

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 184/372 (49%), Positives = 253/372 (68%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +S+FRNYA+  L  D +H +  G+NG GKTN++EAISFLSPGRG RRA+
Sbjct: 36  MPHKVFLTRLKLSDFRNYATAALDLDQRHVVLTGENGAGKTNLMEAISFLSPGRGLRRAA 95

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R+G+   FS FA V+GMEG  +I    +  ++   R L+IN    R VDELN HL
Sbjct: 96  YADVVRVGAADGFSVFAAVDGMEGPVEIGTGTQGSEEGHSRRLRINGTAARTVDELNDHL 155

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  +F+R MR RNRLL+E   D 
Sbjct: 156 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDP 215

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W S+IE +MA LG+ + +AR EM+  LS+L+        FP  +LSL GFLD       
Sbjct: 216 AWVSAIEREMAGLGISMALARQEMLGLLSALVDRSRTDGTFPSARLSLAGFLDDCAGIPA 275

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E Y   L DGR  D+ + RTL GPHRSDL++ + +K I     STGEQK +LVG+ 
Sbjct: 276 FELEERYLAMLADGRARDAAAGRTLDGPHRSDLLIRHREKDIEAERCSTGEQKALLVGLV 335

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL+ + TG AP+LLLDEI+AHLD+ +R ALF +V  +G Q FMTGTD+++F++L E
Sbjct: 336 LAHARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDLVDGLGGQAFMTGTDQTMFEALGE 395

Query: 361 TAKFMRISNHQA 372
            A ++ ++N + 
Sbjct: 396 RAHYLAVANGRV 407


>gi|229164443|ref|ZP_04292371.1| DNA replication and repair protein recF [Bacillus cereus R309803]
 gi|228619048|gb|EEK75946.1| DNA replication and repair protein recF [Bacillus cereus R309803]
          Length = 375

 Score =  358 bits (920), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  VRWDEE-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|229099919|ref|ZP_04230842.1| DNA replication and repair protein recF [Bacillus cereus Rock3-29]
 gi|229118982|ref|ZP_04248327.1| DNA replication and repair protein recF [Bacillus cereus Rock1-3]
 gi|228664507|gb|EEL20003.1| DNA replication and repair protein recF [Bacillus cereus Rock1-3]
 gi|228683534|gb|EEL37489.1| DNA replication and repair protein recF [Bacillus cereus Rock3-29]
          Length = 375

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R + ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFDFLHLLQEWAAPIHRGISRGLEELEIIYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKDAKTIHVTNGTVDC 370


>gi|327467748|gb|EGF13242.1| recombination protein F [Streptococcus sanguinis SK330]
          Length = 364

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 160/371 (43%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ + G ++   R++ +  L S   +     +    +L++         Q   +L
Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVKYLSSIPLHQ-IDSL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D+        +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLLSSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD +++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQALC 374
              I   Q + 
Sbjct: 352 IFTIQQGQIIS 362


>gi|254735167|ref|ZP_05192877.1| recombination protein F [Bacillus anthracis str. Western North
           America USA6153]
          Length = 375

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-LQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|228924237|ref|ZP_04087508.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835455|gb|EEM80825.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 375

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ + G +I   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIDHGARILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|327463824|gb|EGF10140.1| recombination protein F [Streptococcus sanguinis SK1057]
          Length = 364

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 159/371 (42%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTENDLL-----VSGLLEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ + G ++   R++ +  L S   +     +    +L++         Q    L
Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVKYLSSIPLHQ-IDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D+        +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLLSSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD +++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQALC 374
              I   Q L 
Sbjct: 352 IFTIQQGQILS 362


>gi|110632365|ref|YP_672573.1| recombination protein F [Mesorhizobium sp. BNC1]
 gi|110283349|gb|ABG61408.1| DNA replication and repair protein RecF [Chelativorans sp. BNC1]
          Length = 391

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 166/378 (43%), Positives = 225/378 (59%), Gaps = 4/378 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
             ++ I  L +S FRNYASL L       +  G+NG GKTN+LEAISFLSPGRG RRA+ 
Sbjct: 14  PAQVHIAKLTLSNFRNYASLSLGLQPGAVVLTGENGAGKTNLLEAISFLSPGRGLRRATL 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNK 118
            +  RIGS   F+  A VEG  G   I             S R ++I+    R  + +  
Sbjct: 74  EEAMRIGSSDGFAVHAEVEGPYGSCRIGTGTAGTAAEGSESGRRVRIDGEPQRSAEAMLD 133

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            LR+ WL P+MD +F+G S +RRRFLDR+V AIDP H RR  D+E+ MR RNRL  +   
Sbjct: 134 WLRVIWLTPAMDALFTGASADRRRFLDRLVLAIDPAHGRRAADYEKAMRSRNRLFADDVR 193

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D +W  +IE QMAE GV I  AR EM+  L+++I        FP   L+L G +D    +
Sbjct: 194 DDAWFDAIEMQMAETGVAIAAARAEMLRLLAAMIERLPAGSPFPKALLALEGTVDEAIAR 253

Query: 239 SFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    ++E++  +L + R  D  + R L GPHRS+L+V +  K +     STGEQK +LV
Sbjct: 254 NPAVEVEEDFRTRLREERPRDRAAGRALEGPHRSELLVRHAPKDMPAESCSTGEQKALLV 313

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           G+ LAHARL +  +G APILLLDEISAH D D+R ALF I+ D+  Q FMTGT++++F S
Sbjct: 314 GLVLAHARLTAELSGMAPILLLDEISAHFDADRRAALFDILEDLNCQAFMTGTERALFSS 373

Query: 358 LNETAKFMRISNHQALCI 375
           L   A+F+ +S      +
Sbjct: 374 LEGRAQFLAVSGGAIQSV 391


>gi|332365084|gb|EGJ42849.1| recombination protein F [Streptococcus sanguinis SK355]
          Length = 364

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 158/371 (42%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTENELL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHILKQRNAYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ + G ++   R++ +  L S   +     +    +L++         Q    L
Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVKYLSSIPLHQ-IDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D+        +    GS G+ + +++ + LA 
Sbjct: 235 EETYCSSLLSSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD  ++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNKRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQALC 374
              I   Q + 
Sbjct: 352 IFTIQQGQIIS 362


>gi|332363594|gb|EGJ41375.1| recombination protein F [Streptococcus sanguinis SK1059]
          Length = 364

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 159/371 (42%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNSYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ + G ++   R++ +  L S   +     +    KL++         Q    L
Sbjct: 176 TVLDEQLVDYGCRVIKHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPLHQ-IDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D+        +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD +++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQALC 374
              I   Q + 
Sbjct: 352 IFTIQQGQIMS 362


>gi|229015409|ref|ZP_04172415.1| DNA replication and repair protein recF [Bacillus cereus AH1273]
 gi|229026933|ref|ZP_04183256.1| DNA replication and repair protein recF [Bacillus cereus AH1272]
 gi|228734391|gb|EEL85062.1| DNA replication and repair protein recF [Bacillus cereus AH1272]
 gi|228745888|gb|EEL95884.1| DNA replication and repair protein recF [Bacillus cereus AH1273]
          Length = 375

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 164/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFITEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         + +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----YGQIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     LD     
Sbjct: 176 TMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSLDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + + N    C
Sbjct: 354 TLKEAKTIHVMNGTVDC 370


>gi|228961756|ref|ZP_04123359.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228797950|gb|EEM44960.1| DNA replication and repair protein recF [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 375

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         F +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +       Q+ E G KI   R E ++ L        +  +     +++     +D     
Sbjct: 176 TMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE Y +     ++ +     TLIGPHR DL      K + +  GS G+Q+   + 
Sbjct: 236 DLSKIKEVYYESFQSVKQREIFRSTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     +  
Sbjct: 295 LKLAEIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHE 353

Query: 358 LNETAKFMRISNHQALC 374
             + AK + ++N    C
Sbjct: 354 TLKEAKTIHVTNGTVDC 370


>gi|163790922|ref|ZP_02185345.1| recombination protein F [Carnobacterium sp. AT7]
 gi|159873764|gb|EDP67845.1| recombination protein F [Carnobacterium sp. AT7]
          Length = 373

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 168/375 (44%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++S +RNY    ++F     +F+G+N  GKT+++EAI  L+  R  R A+  + 
Sbjct: 1   MLLKEIHLSNYRNYEHAEVIFSKGINVFLGENAQGKTSLMEAIYVLAMARSHRTANDKET 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         FARV G     + S  LE    +  +  + N +  + + E   +L +  
Sbjct: 61  IRWDQD-----FARVSGRIQKKNTSFPLEISISKKGKKAKFNHLEQKKLSEYIGNLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  + P +   ++ ++ L++ RN  L +       D 
Sbjct: 116 FAPEDLSLVKGSPSVRRKFLDMEMGQMSPIYLHHLVQYQHLLKQRNSYLKQLSLKKEKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           ++   +  Q+AE G  I + R   +  L +       + +     +++     L    + 
Sbjct: 176 TFLDILTEQLAEYGAAILLERFSFVKKLENWAKPVHSEISKQKELLEIGYACSLKITDET 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   L  +       GR+ +   R T+ GPHR DL      + +   +GS G+Q+   + 
Sbjct: 236 SKEQLYSDLMNAFAQGRQRELEQRTTIFGPHRDDLKFTVNGRNV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   L+   TG  P+LLLD++ + LD++++  L + + +   Q F+T T       +
Sbjct: 295 VKLAEIDLMKEMTGEYPVLLLDDVLSELDDERQTHLLKAIQNK-VQTFLTTTSLDGIKKN 353

Query: 358 LNETAKFMRISNHQA 372
           + ET K   I N Q 
Sbjct: 354 MLETPKIFLIDNGQV 368


>gi|324991876|gb|EGC23799.1| recombination protein F [Streptococcus sanguinis SK405]
 gi|324996234|gb|EGC28144.1| recombination protein F [Streptococcus sanguinis SK678]
 gi|327458500|gb|EGF04850.1| recombination protein F [Streptococcus sanguinis SK1]
 gi|327471598|gb|EGF17041.1| recombination protein F [Streptococcus sanguinis SK408]
 gi|327490328|gb|EGF22115.1| recombination protein F [Streptococcus sanguinis SK1058]
          Length = 364

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 159/371 (42%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEAI FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ + G ++   R++ +  L S   +     +    KL++         Q    L
Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTIKYLSSIPL-QKIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D+        +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD +++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQALC 374
              I   Q + 
Sbjct: 352 IFTIQQGQIMS 362


>gi|325695750|gb|EGD37649.1| recombination protein F [Streptococcus sanguinis SK150]
 gi|328945164|gb|EGG39319.1| recombination protein F [Streptococcus sanguinis SK1087]
          Length = 364

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 158/371 (42%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTENDLL-----VSGLLEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ + G ++   R++ +  L S   +     +    KL++         Q    L
Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPL-QKIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GP R D+        +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPQRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD +++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-NIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQALC 374
              I   Q + 
Sbjct: 352 IFTIQQGQIVS 362


>gi|325686466|gb|EGD28495.1| recombination protein F [Streptococcus sanguinis SK72]
          Length = 364

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 159/371 (42%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ + G ++   R++ +  L S   +     +    KL++         Q    L
Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPL-QKIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D+        +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD +++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQALC 374
              I   Q + 
Sbjct: 352 IFTIQQGQIMS 362


>gi|325689344|gb|EGD31350.1| recombination protein F [Streptococcus sanguinis SK115]
          Length = 364

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 159/371 (42%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTENDLL-----VSGLLEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNTYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ + G ++   R++ +  L S   +     +    +L++         Q    L
Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEELTVKYLSSIPLHQ-IDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D+        +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD +++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQALC 374
              I   Q + 
Sbjct: 352 IFTIQQGQIMS 362


>gi|324989568|gb|EGC21514.1| recombination protein F [Streptococcus sanguinis SK353]
          Length = 364

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 158/371 (42%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEAI FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ + G ++   R++ +  L S   +     +    KL++         Q    L
Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPLHQ-IDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D+        +    GS G+ + +++ + LA 
Sbjct: 235 EETYRFSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD  ++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNSRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQALC 374
              I   Q + 
Sbjct: 352 IFTIQQGQIMS 362


>gi|306828609|ref|ZP_07461803.1| recombination protein F [Streptococcus mitis ATCC 6249]
 gi|304429217|gb|EFM32303.1| recombination protein F [Streptococcus mitis ATCC 6249]
          Length = 363

 Score =  355 bits (911), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLTIKTFRNYKETKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + GM      SI LE       R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGMLQKKTGSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ E G ++   R++ I  L     +   + +    +LS++      F  +   L
Sbjct: 176 SVLDDQLVEYGCRVIKHRIKFIKDLEKFGQKKHLEISNQSEELSISYQSTVNF-TNEEVL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            + +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 MDSFKMALEKSRSRDLFKKNTGVGPHRDDIAFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I N + 
Sbjct: 352 IFNIQNGRI 360


>gi|218674981|ref|ZP_03524650.1| recombination protein F [Rhizobium etli GR56]
          Length = 354

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 176/353 (49%), Positives = 243/353 (68%)

Query: 21  LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVE 80
           + L  D +H +  G+NG GKTN++EA+S LSPGRG RRA+Y D+TR+G+   FS FA ++
Sbjct: 1   MSLTLDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAAYGDITRVGATGGFSIFAALD 60

Query: 81  GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMER 140
           GMEG  +I   +E  ++ + R L+IN    +  DEL  HLR+ WL P+MD +F+G S +R
Sbjct: 61  GMEGEVEIGTGIEAGEETTTRRLRINGTAAKTADELTDHLRLLWLTPAMDGLFTGASSDR 120

Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
           RRFLDR+V ++DP H RR  DFER MR RN+LL EG FD SW + IE QMA LG+ + +A
Sbjct: 121 RRFLDRLVLSLDPAHGRRASDFERAMRSRNKLLDEGRFDPSWLAGIEEQMASLGIAMALA 180

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           R EM+  L+ LI E  +   FP   L L+GF+DG+F +    L++EYA  L + R  D+ 
Sbjct: 181 RQEMLGLLTRLIEERPENSPFPSASLQLSGFMDGQFSRPSVDLEDEYAAMLAESRYRDAG 240

Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
           + RTL GPHR+DLIV + +KA+     STGEQK +LVG+ LAHARL+ N TG APILLLD
Sbjct: 241 AGRTLEGPHRADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGNLTGHAPILLLD 300

Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           EI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L + A+F  +++ +  
Sbjct: 301 EIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRTMFSALADRAQFFTVADGKVF 353


>gi|332364154|gb|EGJ41931.1| recombination protein F [Streptococcus sanguinis SK49]
          Length = 364

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 159/371 (42%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEA+ FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAVYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTDNDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVIKQRNAYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ + G ++   R++ +  L S   +     +    KL++         Q    L
Sbjct: 176 TVLDDQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPL-QKIDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D+        +    GS G+ + +++ + LA 
Sbjct: 235 EETYRSSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD +++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQALC 374
              I   Q + 
Sbjct: 352 IFTIQQGQIVS 362


>gi|323350818|ref|ZP_08086477.1| recombination protein F [Streptococcus sanguinis VMC66]
 gi|322122992|gb|EFX94695.1| recombination protein F [Streptococcus sanguinis VMC66]
          Length = 364

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 158/371 (42%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEAI FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ + G ++   R++ +  L S   +     +    KL++         Q    L
Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPLHQ-IDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D+        +    GS G+ + +++ + LA 
Sbjct: 235 EETYRFSLISSRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD  ++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNSRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQALC 374
              I   + + 
Sbjct: 352 IFTIQQGEIMS 362


>gi|149182287|ref|ZP_01860766.1| recombination protein F [Bacillus sp. SG-1]
 gi|148849979|gb|EDL64150.1| recombination protein F [Bacillus sp. SG-1]
          Length = 372

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 160/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  +RNY S+ + F+    + +G+N  GKTNI+E+I  L+  +  R ++  D+
Sbjct: 1   MYIEEIQLKNYRNYDSVDISFENNVNVILGENAQGKTNIMESIYVLAMAKSHRTSNDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A+++G     + S+ LE    +  +  + N +  + + +   ++ +  
Sbjct: 61  IRWDEE-----YAKIKGRIKKHNGSLPLELVISKKGKKAKSNHIEQKKLSQYVGNMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D  +  + P +   +  ++++++ RN  L         D 
Sbjct: 116 FAPEDLHLVKGSPQVRRRFIDMEIGQVSPVYLHDIALYQKILQQRNHYLKMLQTRKQKDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +    +  Q+ E+  KI   R E I  L           +     + +     +D   DQ
Sbjct: 176 TMLDVLTEQLTEVSAKIIRKRFEFIELLQEWARPIHSGISRGLETLDIQYKPSIDVCDDQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            +  + +  A+K    R+ +     TL GPHR DL     D+ +    GS G+Q+   + 
Sbjct: 236 DWSKMIDIIAEKFHTIRQREIDRGVTLAGPHRDDLQFFVNDRDV-QTFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     D  
Sbjct: 295 LKLAEIELIHSEIKEYPILLLDDVLSELDDFRQSHLLNTIQGK-VQTFVTTTSVDGIDHQ 353

Query: 358 LNETAKFMRISNHQA 372
               A    +     
Sbjct: 354 TLNDATTFEVETGHI 368


>gi|322386450|ref|ZP_08060079.1| recombination protein F [Streptococcus cristatus ATCC 51100]
 gi|321269536|gb|EFX52467.1| recombination protein F [Streptococcus cristatus ATCC 51100]
          Length = 371

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 91/367 (24%), Positives = 161/367 (43%), Gaps = 10/367 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L I  FRNY +  + FD    IF+G N  GKTNILEAI FL+  R  R  +  D+
Sbjct: 1   MWLKTLKIKHFRNYQAAEVDFDPGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRTDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +       +E   G   + I+L  +     R  +IN +    + +    + +  
Sbjct: 61  IHFQEKN-LQISGIIEKTTGKIPLDIELTPKG----RITKINHLKQGKLSDYIGIVNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPALRRKFIDIELGQIKPIYLADLSSYNHVLKQRNAYLKANDKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L     E     +    KL++       F      L
Sbjct: 176 SVLDEQLIDFGCRVMQHRLDFIEKLEDFAQESHSDISQGKEKLTIKYVSSVPFSC-LENL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +  +   L + R+ D   + T +GPHR D+     D  +    GS G+ + +++ + LA 
Sbjct: 235 EASFRSALSESRRRDLFKKNTGVGPHRDDINFFIND--MDAGFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD  ++  L   ++    Q F+T T      +L +   
Sbjct: 293 IKLIESLTKDTPILLLDDVMSELDNMRQLKLLETISQ-NIQTFITTTSLDHLQNLPDDIN 351

Query: 364 FMRISNH 370
             +IS  
Sbjct: 352 IFQISQG 358


>gi|125719147|ref|YP_001036280.1| recombination protein F [Streptococcus sanguinis SK36]
 gi|166221875|sp|A3CRC5|RECF_STRSV RecName: Full=DNA replication and repair protein recF
 gi|125499064|gb|ABN45730.1| DNA replication and repair protein recF, putative [Streptococcus
           sanguinis SK36]
          Length = 364

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 158/371 (42%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEAI FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDIQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNAYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ + G ++   R++ +  L S   +     +    KL++         Q    L
Sbjct: 176 TVLDEQLVDYGCRVIRHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPLHQ-IDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L   RK D   + T +GPHR D+        +    GS G+ + +++ + LA 
Sbjct: 235 EETYRFSLIISRKRDLFKKNTGVGPHRDDIAFFIN--QMDANFGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI + T   PILLLD++ + LD  ++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIESITKETPILLLDDVMSELDNSRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIK 351

Query: 364 FMRISNHQALC 374
              I   Q + 
Sbjct: 352 IFTIQQGQIMS 362


>gi|322377917|ref|ZP_08052405.1| DNA replication and repair protein RecF [Streptococcus sp. M334]
 gi|321281093|gb|EFX58105.1| DNA replication and repair protein RecF [Streptococcus sp. M334]
          Length = 365

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 166/370 (44%), Gaps = 10/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ +++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FLS  R  R  +  ++
Sbjct: 1   MWLQHISLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLSLTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      S+ LE +  +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSVPLEIKLTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSTQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L +   +   + +    +LS++     K       L
Sbjct: 176 SVLDEQLVDYGCRVMNHRLDFIKKLEAFGRKKHFELSNQIEELSISYQSSVKI-TDKEDL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQAL 373
              I   Q +
Sbjct: 352 IFTIQGGQVV 361


>gi|328956386|ref|YP_004373772.1| DNA replication and repair protein RecF [Carnobacterium sp. 17-4]
 gi|328672710|gb|AEB28756.1| DNA replication and repair protein RecF [Carnobacterium sp. 17-4]
          Length = 373

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 169/375 (45%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++S +RNY    ++F     +F+G+N  GKT+++EAI  L+  R  R A+  + 
Sbjct: 1   MLLKEIHLSNYRNYEHAEVIFSKGINVFLGENAQGKTSLMEAIYVLAMARSHRTANDKET 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         FARV G     + S  LE    +  +  + N +  + + E   +L +  
Sbjct: 61  IRWEQE-----FARVSGRIQKKNTSFPLEISISKKGKKAKFNHLEQKKLSEYIGNLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  + P +   ++ ++ L++ RN  L +       D 
Sbjct: 116 FAPEDLSLVKGSPSVRRKFLDMEMGQMSPIYLHHLVQYQHLLKQRNSYLKQLSLKKVKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PHIKLSLTGFLDGKFDQ 238
           ++   +  Q+AE G  I + R   I  L +       + +     +++  +  L    + 
Sbjct: 176 TFLDILTEQLAEFGAAILVERFSFIKKLENWAKPVHAEISRQKEILEIGYSCSLKITNET 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +  +       GR+ +   R T+ GPHR DL      + +   +GS G+Q+   + 
Sbjct: 236 DKKQIYSDLMNAYTQGRQRELEQRTTIFGPHRDDLKFSVNGRNV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   L+   TG  P+LLLD++ + LD++++  L + + +   Q F+T T      ++
Sbjct: 295 VKLAEIDLMKEMTGEYPVLLLDDVLSELDDERQTHLLKAIQNK-VQTFLTTTSLDGIKEN 353

Query: 358 LNETAKFMRISNHQA 372
           + ET K   I N Q 
Sbjct: 354 MLETPKIFLIDNGQV 368


>gi|270291841|ref|ZP_06198056.1| DNA replication and repair protein RecF [Streptococcus sp. M143]
 gi|270279369|gb|EFA25211.1| DNA replication and repair protein RecF [Streptococcus sp. M143]
          Length = 365

 Score =  353 bits (906), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 164/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLTIKTFRNYKETKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE       R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSNQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ E G ++   R++ I  L +   +   + +    +LS++      F  +   L
Sbjct: 176 SVLDDQLVEYGCRVIKHRIKFIKDLENFGQKKHLEISNQSEELSISYQSTVNF-TNEEVL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            + +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 MDSFKMALEKSRSRDLFKKNTGVGPHRDDIAFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITKESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I N + 
Sbjct: 352 IFNIRNGKV 360


>gi|296875531|ref|ZP_06899603.1| recombination protein F [Streptococcus parasanguinis ATCC 15912]
 gi|296433455|gb|EFH19230.1| recombination protein F [Streptococcus parasanguinis ATCC 15912]
          Length = 364

 Score =  353 bits (905), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 94/369 (25%), Positives = 160/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L+I  FRNY  L + F     IF+G N  GKTNILE+I FL+  R  R  +  D+
Sbjct: 1   MWLKQLSIQHFRNYQELEVEFHPGLNIFLGQNAQGKTNILESIYFLALTRSHRTRNDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S  F     +V G        + LE       R  ++N +    +     H+ +  
Sbjct: 61  IYFESTDF-----KVSGQLQRETGPLPLEISLTPKGRITKVNHLKQAKLSNYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
             P   ++  G    RR+F+D  +  + P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLIKGSPAGRRKFIDIELGQMKPLYLSDLSQYNHVLKQRNSYLKNSEKIDATFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +++Q+A  G ++   R+E I  L +   E   + +     LS+       F +    +
Sbjct: 176 EVLDSQLASFGSRVIYHRLEFIKKLEAKAKEKHTRLSDNKEDLSIQYQ-STVFSEDGNDI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E++   L   R+ D   + T IGPHR DL     +       GS G+ + V++ + LA 
Sbjct: 235 EEQFLSMLEKNRQKDIFRKTTSIGPHRDDLAFFINNMN--ATFGSQGQHRSVVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   T   PILLLD++ + LD  ++  L   +++   Q F+T T       L E  K
Sbjct: 293 IELMEEITREKPILLLDDVMSELDNYRQLQLLETISN-NIQTFITTTTLDHLKELPEELK 351

Query: 364 FMRISNHQA 372
              I     
Sbjct: 352 IFTIQAGHI 360


>gi|313889502|ref|ZP_07823148.1| DNA replication and repair protein RecF [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313122114|gb|EFR45207.1| DNA replication and repair protein RecF [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 364

 Score =  352 bits (904), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 161/369 (43%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L ++ +RNY  ++  F     +F+G+N  GKTN LEAI F++  R  R     ++
Sbjct: 1   MWLKELTLTNYRNYEQIQTKFVPGLNVFIGNNAQGKTNFLEAIYFIALTRSHRTRIDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F     +V G        I LE    +  R  +IN +    + +   ++++  
Sbjct: 61  IH-----FLKDDLKVSGKIERTSGIISLEIALTKKGRITKINSLKQAKLSDYIGNMKVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      +S + 
Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSQYNYVLKQRNTYLKTASSINSDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             ++ Q+A+ G ++   R++ I AL      +    +     L+L+       +    ++
Sbjct: 176 DVLDEQLADYGTRVIHQRMQFIEALEEEAHRHHFAISDGLEDLTLSYQSSIVLEP-KESI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE + + L + R+ D   + T +GPHR D++    D        S G+ + +++ + +A 
Sbjct: 235 KERFIEALQNNRQKDMFKKNTSVGPHRDDILFYINDMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   +     Q F+T T      SL    K
Sbjct: 293 VSLMKELTGENPILLLDDVMSELDNLRQTKLLETIIQEHVQTFITTTSLEHLSSLPPDIK 352

Query: 364 FMRISNHQA 372
              +S    
Sbjct: 353 TFYVSQGTI 361


>gi|323487684|ref|ZP_08092942.1| hypothetical protein GPDM_00015 [Planococcus donghaensis MPA1U2]
 gi|323398418|gb|EGA91206.1| hypothetical protein GPDM_00015 [Planococcus donghaensis MPA1U2]
          Length = 370

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 161/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  +RNY SL L F  +  +F+G+N  GKTN++E++  LS  +  R ++  ++
Sbjct: 1   MRIDRLELVNYRNYESLELEFSPEINVFIGENAQGKTNVMESLYVLSMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      + +++         + LE    +  +  ++N +  R + +    L +  
Sbjct: 61  IRWDAD-----YGKIKADVFRKYGKLPLEITLSKKGKKAKVNHLEQRRLSDYIGQLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180
             P    +  G    RRRF+D  +  I P +   ++++++L++ RN +L + Y     + 
Sbjct: 116 FAPEDLHLVKGSPQVRRRFIDMEIGQISPVYLHDLVNYQKLLKQRNHILKQHYGKQTIND 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                   Q  E  VKI   R + +  L           +    +L +           +
Sbjct: 176 VMFEVYTEQFIEAAVKIIRKRYQFMELLQKWAEPIHHGISRGLEQLQIRYQPISGLKPEW 235

Query: 241 --CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +     +KL + RK +     TL+GPHR +L        +   +GS G+Q+   + 
Sbjct: 236 TPEEMASFLEQKLIEVRKREIERGVTLVGPHRDELQFFVNGYDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI    G AP+LLLD++ + LD+ +++ L   +     Q F+T T        
Sbjct: 295 LKLAEIELIKQEVGEAPVLLLDDVLSELDDYRQSHLLNTIKG-SVQTFVTTTSVEGIQHE 353

Query: 358 LNETAKFMRISNHQA 372
             + A+   +S+   
Sbjct: 354 TIQNARLFEVSHGTV 368


>gi|76787191|ref|YP_330704.1| recombination protein F [Streptococcus agalactiae A909]
 gi|77406514|ref|ZP_00783567.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           H36B]
 gi|77411774|ref|ZP_00788110.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           CJB111]
 gi|97180994|sp|Q3JYE9|RECF_STRA1 RecName: Full=DNA replication and repair protein recF
 gi|76562248|gb|ABA44832.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           A909]
 gi|77162165|gb|EAO73140.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           CJB111]
 gi|77174886|gb|EAO77702.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           H36B]
          Length = 369

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 162/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK +++  +RNY   ++ F     IF+G N  GKTN LEAI FL+  R  R  S  ++
Sbjct: 1   MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        ++ G        + L+ +     R  ++N +    + +    + +  
Sbjct: 61  VHFKHHD-----VQITGEVIRKSGHLSLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+FLD  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+A+ G ++   R + I AL+    ++    +     LS+      +F     ++
Sbjct: 176 SVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEF-TDKSSI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +  +L      D   + T IGPHR D+     D  I    GS G+Q+ +++ + LA 
Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFGSQGQQRSLILSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   T   PILLLD++ + LD  ++  L   + +   Q F+T T      +L +  K
Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351

Query: 364 FMRISNHQA 372
              +S+   
Sbjct: 352 IFNVSDGTI 360


>gi|94995364|ref|YP_603462.1| recombination protein F [Streptococcus pyogenes MGAS10750]
 gi|166221872|sp|Q1J443|RECF_STRPF RecName: Full=DNA replication and repair protein recF
 gi|94548872|gb|ABF38918.1| DNA replication and repair protein recF [Streptococcus pyogenes
           MGAS10750]
          Length = 368

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +  
Sbjct: 61  IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLFELSHYNHVLKQRNSYLKSAQQIDAAFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+   ++
Sbjct: 176 AVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTSI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D   + T +GPHR DL              S G+ + +++ + +A 
Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L E  +
Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFHVTKGTV 361


>gi|306826174|ref|ZP_07459509.1| recombination protein F [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304431650|gb|EFM34631.1| recombination protein F [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 363

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 160/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLTIKTFRNYKETKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE       R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLLQKKTGSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ E G ++   R++ I  L     +   + +    +LS+       F      L
Sbjct: 176 SVLDDQLVEYGCRVIKHRIKFIKDLEKFGQKKHLEISNQSEELSIFYQSSVNF-TDEEQL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 TNSFKMALDKSRSRDLFKKNTGVGPHRDDITFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I N Q 
Sbjct: 352 IFNIQNGQI 360


>gi|19747036|ref|NP_608172.1| recombination protein F [Streptococcus pyogenes MGAS8232]
 gi|94991484|ref|YP_599584.1| recombination protein F [Streptococcus pyogenes MGAS10270]
 gi|306826422|ref|ZP_07459735.1| recombination protein F [Streptococcus pyogenes ATCC 10782]
 gi|25453247|sp|Q8NYZ4|RECF_STRP8 RecName: Full=DNA replication and repair protein recF
 gi|166221871|sp|Q1JEB8|RECF_STRPD RecName: Full=DNA replication and repair protein recF
 gi|19749296|gb|AAL98671.1| recF protein [Streptococcus pyogenes MGAS8232]
 gi|94544992|gb|ABF35040.1| DNA replication and repair protein recF [Streptococcus pyogenes
           MGAS10270]
 gi|304431386|gb|EFM34382.1| recombination protein F [Streptococcus pyogenes ATCC 10782]
          Length = 368

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +  
Sbjct: 61  IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    +
Sbjct: 176 AVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D   + T +GPHR DL              S G+ + +++ + +A 
Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L E  +
Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFHVTKGTV 361


>gi|56808225|ref|ZP_00365998.1| COG1195: Recombinational DNA repair ATPase (RecF pathway)
           [Streptococcus pyogenes M49 591]
 gi|209560278|ref|YP_002286750.1| recombination protein F [Streptococcus pyogenes NZ131]
 gi|226737844|sp|B5XJC1|RECF_STRPZ RecName: Full=DNA replication and repair protein recF
 gi|209541479|gb|ACI62055.1| Recombination protein F [Streptococcus pyogenes NZ131]
          Length = 368

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +  
Sbjct: 61  IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    +
Sbjct: 176 AVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D   + T +GPHR DL              S G+ + +++ + +A 
Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L E  +
Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFHVTKGTV 361


>gi|262281653|ref|ZP_06059422.1| recombination protein F [Streptococcus sp. 2_1_36FAA]
 gi|262262107|gb|EEY80804.1| recombination protein F [Streptococcus sp. 2_1_36FAA]
          Length = 361

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 163/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRNY    + F +   +F+G N  GKTNILE+I FL+  R  R  S  D 
Sbjct: 1   MWLKSLTLKHFRNYQDAEINFHSGLNVFLGQNAQGKTNILESIYFLALTRSHRTRSDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        +V G+      +I L+       R  +IN +    + +    + +  
Sbjct: 61  IHFQEKDL-----KVSGILEKKTGTIPLDIELTAKGRITKINHLKQNRLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPLYLADLSNYNHVLKQRNSYLKNSQKIDENFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ E G ++   R++ +  L     E     +     L++         Q   ++
Sbjct: 176 SVLDEQLIEYGCRVVKHRLDFLKKLEIFAQEKHLDISQKKETLTIDYLSSVPL-QDIDSI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E + + L   RK D   + T +GPHR D+        +   +GS G+ + V++ + LA 
Sbjct: 235 EESFRQSLSKNRKRDLFKQNTGVGPHRDDIAFFIN--QMDANYGSQGQHRSVVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI N T  +PILLLD++ + LD D++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIENITKESPILLLDDVMSELDNDRQLKLLETISQ-EIQTFITTTTLEHLKNLPKDIK 351

Query: 364 FMRISNHQA 372
              ISN   
Sbjct: 352 IFEISNGNI 360


>gi|332523373|ref|ZP_08399625.1| DNA replication and repair protein RecF [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314637|gb|EGJ27622.1| DNA replication and repair protein RecF [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 363

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 162/369 (43%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  +RNY  ++  F     +F+G+N  GKTN LEAI F++  R  R  +  ++
Sbjct: 1   MWLKELTLINYRNYEQIQTKFVPGLNVFIGNNAQGKTNFLEAIYFIALTRSHRTRTDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                      + ++E   G+  + I L     +  R  +IN +    + +   ++++  
Sbjct: 61  IHFLKDD-LKVYGKIERTSGVISLEITL----TKKGRITKINSLKQAKLSDYVGNMKVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      +  + 
Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPVYLSDLSQYNYVLKQRNTYLKTAVSINKDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             ++ Q+A+ G ++   R++ I AL      +    +    +L L+        ++  ++
Sbjct: 176 DVLDEQLADYGTRVIHQRMQFIEALQQEAHRHHFAISDGLEQLKLSYQSSIAL-EAKESI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++ + + L   R+ D   + T +GPHR D++    D        S G+ + +++ + +A 
Sbjct: 235 RDRFMEALLHNRQKDMFKKNTSVGPHRDDIMFYINDMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   +     Q F+T T      SL    K
Sbjct: 293 VSLMKELTGENPILLLDDVMSELDNLRQTKLLETIIQEHVQTFITTTSLEHLSSLPPDIK 352

Query: 364 FMRISNHQA 372
              +S    
Sbjct: 353 TFYVSQGTI 361


>gi|56418539|ref|YP_145857.1| recombination protein F [Geobacillus kaustophilus HTA426]
 gi|81675966|sp|Q5L3Y9|RECF_GEOKA RecName: Full=DNA replication and repair protein recF
 gi|56378381|dbj|BAD74289.1| DNA replication and repair protein [Geobacillus kaustophilus
           HTA426]
          Length = 372

 Score =  352 bits (903), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 159/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L ++ +RNY    L F     + +G+N  GKTN++EAI  L+  +  R ++  D+
Sbjct: 1   MFLTNLTLTNYRNYEYETLNFGEGVNVILGENAQGKTNMMEAIYVLAMAKSHRTSNDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG       S+ LE    +  +  + N +  + + +   HL +  
Sbjct: 61  IRWNEE-----YAKIEGRAEKRSGSLTLELLISKKGKKARCNHIEQQRLSQYVGHLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D  +  + P +   +  +++L++ RN  L         D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMMQARERSDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +    +  Q+  L  KI + R + ++ L    M    + +     + +     +D     
Sbjct: 176 AVLDVLTEQLVLLAAKITLRRRQFLSLLEQWAMPIHYEISRGAEQLCIRYEPSVDVSEKA 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + E Y++     R+ +     TL+GPHR D+      K +    GS G+Q+   + 
Sbjct: 236 ELSRIVEAYSETFAAMREREVQRGTTLVGPHRDDIAFFVNGKNV-QTFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +  G  PILLLD++ + LD+ ++  L   +     Q F+T T        
Sbjct: 295 VKLAELELIFSELGDYPILLLDDVLSELDDFRQTHLLDAIRKK-VQTFVTTTSIDGIKHD 353

Query: 358 LNETAKFMRISNHQA 372
           + + A   R+ +   
Sbjct: 354 IIQEAAIYRVHSGSV 368


>gi|322390514|ref|ZP_08064032.1| recombination protein F [Streptococcus parasanguinis ATCC 903]
 gi|321142788|gb|EFX38248.1| recombination protein F [Streptococcus parasanguinis ATCC 903]
          Length = 364

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 160/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L+I  FRNY  L + F     IF+G N  GKTNILE+I FL+  R  R  +  D+
Sbjct: 1   MWLKHLSIQHFRNYQELEVEFHPGLNIFLGQNAQGKTNILESIYFLALTRSHRTRNDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S  F     +V G        + LE       R  ++N +    +     H+ +  
Sbjct: 61  IYFESTDF-----KVSGQLQRETGPLPLEISLTPKGRITKVNHLKQAKLSNYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
             P   ++  G    RR+F+D  +  + P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLIKGSPAGRRKFIDIELGQMKPLYLSDLSQYNHVLKQRNSYLKNSEKIDATFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +++Q+A  G ++   R+E I  L +   E   + +     LS+       F +    +
Sbjct: 176 EVLDSQLASFGSRVIHHRLEFIKKLEAKAKEKHTRLSDNKEALSIQYQ-STVFSEEGNDI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E++   L   R+ D   + T IGPHR DL     +       GS G+ + V++ + LA 
Sbjct: 235 EEQFLSMLEKNRQKDIFRKTTSIGPHRDDLAFFINNMN--ATFGSQGQHRSVVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   T   PILLLD++ + LD  ++  L   +++   Q F+T T       L E  K
Sbjct: 293 IELMEEITREKPILLLDDVMSELDNYRQLQLLETISN-NIQTFITTTTLDHLKDLLEELK 351

Query: 364 FMRISNHQA 372
              +     
Sbjct: 352 IFTVQAGHI 360


>gi|261417504|ref|YP_003251186.1| recombination protein F [Geobacillus sp. Y412MC61]
 gi|297528380|ref|YP_003669655.1| DNA replication and repair protein RecF [Geobacillus sp. C56-T3]
 gi|319765162|ref|YP_004130663.1| DNA replication and repair protein RecF [Geobacillus sp. Y412MC52]
 gi|261373961|gb|ACX76704.1| DNA replication and repair protein RecF [Geobacillus sp. Y412MC61]
 gi|297251632|gb|ADI25078.1| DNA replication and repair protein RecF [Geobacillus sp. C56-T3]
 gi|317110028|gb|ADU92520.1| DNA replication and repair protein RecF [Geobacillus sp. Y412MC52]
          Length = 372

 Score =  352 bits (903), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 160/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L ++ +RNY    L F     + +G+N  GKTN++EAI  L+  +  R ++  D+
Sbjct: 1   MFLTNLTLTNYRNYEYETLNFGEGVNVILGENAQGKTNMMEAIYVLAMAKSHRTSNDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG       S+ LE    +  +  + N +  + + +   HL +  
Sbjct: 61  IRWNEE-----YAKIEGRAEKRSGSLTLELLISKKGKKARCNHIEQQRLSQYVGHLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D  +  + P +   +  +++L++ RN  L         D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMMQARERSDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +    +  Q+  L  KI + R + ++ L    M    + +     + +     +D     
Sbjct: 176 AVLDVLTEQLVLLAAKITLRRRQFLSLLEQWAMPIHYEISRGAEQLCIRYEPSVDVSEKA 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + E Y++     R+ + +   TL+GPHR D+      K +    GS G+Q+   + 
Sbjct: 236 ELSRIVEAYSETFAAMREREVLRGTTLVGPHRDDIAFFVNGKNV-QTFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +  G  PILLLD++ + LD+ ++  L   +     Q F+T T        
Sbjct: 295 VKLAELELIFSELGDYPILLLDDVLSELDDFRQTHLLDAIRKK-VQTFVTTTSIDGIKHD 353

Query: 358 LNETAKFMRISNHQA 372
           + + A   R+ +   
Sbjct: 354 IIQEAAIYRVHSGSV 368


>gi|73661313|ref|YP_300094.1| recombination protein F [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|82581562|sp|Q4A177|RECF_STAS1 RecName: Full=DNA replication and repair protein recF
 gi|72493828|dbj|BAE17149.1| DNA repair and genetic recombination protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 371

 Score =  351 bits (902), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 98/377 (25%), Positives = 165/377 (43%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY S+ L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLKTLQLQNYRNYESISLNCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      +A++EG        + L     +  + ++IN +    + +   HL +  
Sbjct: 61  IRFDSD-----YAKIEGDLSYRYGEMPLTMYITKKGKQVKINHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       DS
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLSQYQRILKQKNNYLKQLQYGQKTDS 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
           +    +  Q AE  +KI + R   IN L SL              LSL      K    D
Sbjct: 176 TMLEVLNQQFAEYALKITLRREHFINELESLAKPIHSGITNERETLSLNYLPSIKLENKD 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +S     EE    L D  + +      L GPHR DL  +         +GS G+Q+   +
Sbjct: 236 KSETERLEEVLTILNDNMEREKDRGVCLYGPHRDDLGFNVNGMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ +++ L   +     Q F+T T     + 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQSHLLSTIQHK-VQTFVTTTSVDGIEH 353

Query: 357 SLNETAKFMRISNHQAL 373
            + + AK  RI+  + +
Sbjct: 354 EIMKNAKLYRINQGEII 370


>gi|50915219|ref|YP_061191.1| recombination protein F [Streptococcus pyogenes MGAS10394]
 gi|73914003|sp|Q5X9A5|RECF_STRP6 RecName: Full=DNA replication and repair protein recF
 gi|533080|gb|AAA85783.1| RecF protein [Streptococcus pyogenes]
 gi|50904293|gb|AAT88008.1| RecF [Streptococcus pyogenes MGAS10394]
          Length = 368

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +  
Sbjct: 61  IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    +
Sbjct: 176 AVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D   + T +GPHR DL              S G+ + +++ + +A 
Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L E  +
Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFHVTKGTV 361


>gi|290581413|ref|YP_003485805.1| putative RecF protein [Streptococcus mutans NN2025]
 gi|254998312|dbj|BAH88913.1| putative RecF protein [Streptococcus mutans NN2025]
          Length = 363

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 163/371 (43%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ +N+  +RNY ++   F     +FVG N  GKTN LEAI FLS  R  R  S  ++
Sbjct: 1   MWIEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G          V G+    +  I LE       R  +IN +    + +    + +  
Sbjct: 61  IQFGQKEL-----NVSGLLNRVNGKIPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L  E   D+ + 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQRNAYLKSEKKVDTDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             ++ Q+ + G K+   R++ I  L+    +Y    +     L ++     KFD     +
Sbjct: 176 FVLDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQEHLKISYLSSVKFDH-KKNI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++ +   L   R+ D   + T +GPHR DL        +    GS G+ + +++ + LA 
Sbjct: 235 RDNFLNLLQKNRQGDIFKKNTSVGPHRDDLAFFIN--QMNANFGSQGQHRSLILSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   TG  PILLLD++ + LD  ++  L   + D   Q F+T T       L +  K
Sbjct: 293 IELIKTVTGDYPILLLDDVMSELDNYRQIKLLEGIKD-NVQTFITTTSLEHLQQLPKKLK 351

Query: 364 FMRISNHQALC 374
              I+  + L 
Sbjct: 352 LFTINQGKVLS 362


>gi|138893683|ref|YP_001124136.1| recombination protein F [Geobacillus thermodenitrificans NG80-2]
 gi|196249897|ref|ZP_03148593.1| DNA replication and repair protein RecF [Geobacillus sp. G11MC16]
 gi|166220711|sp|A4IJ87|RECF_GEOTN RecName: Full=DNA replication and repair protein recF
 gi|134265196|gb|ABO65391.1| RecF [Geobacillus thermodenitrificans NG80-2]
 gi|196210773|gb|EDY05536.1| DNA replication and repair protein RecF [Geobacillus sp. G11MC16]
          Length = 372

 Score =  351 bits (902), Expect = 8e-95,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 158/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L ++ +RNY    L FD    I +G+N  GKTN++EAI  L+  +  R  +  D+
Sbjct: 1   MFLTNLTLTNYRNYEHETLSFDQGVNIILGENAQGKTNMMEAIYVLAMAKSHRTTNDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG       S+ LE    +  +  + N +  + + +   HL +  
Sbjct: 61  IRWNED-----YAKIEGRAEKRSGSLALELTISKKGKKARCNHIEQQRLSQYVGHLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D  +  + P +   +  +++L++ RN  L         D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFIDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMMQAREQHDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +    +  Q+  L  KI + R + +  L    M    + +     + +     +D     
Sbjct: 176 AVLDVLTEQLMVLAAKITLRRRQFLALLEQWAMPIHHEISRGAERLHIRYEPSVDVSEKA 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + E Y++     R+ +     TL+GPHR D+      K +    GS G+Q+   + 
Sbjct: 236 ELSRIVEAYSETFAAMREREIQRGTTLVGPHRDDIAFIVNGKNV-QTFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI +  G  PILLLD++ + LD+ ++  L   +     Q F+T T        
Sbjct: 295 VKLAEIELIFSELGDYPILLLDDVLSELDDFRQTHLLDAIRKK-VQTFVTTTSIDGIKHD 353

Query: 358 LNETAKFMRISNHQA 372
           L + A   R+ +   
Sbjct: 354 LIQEAAIYRVHSGSV 368


>gi|322515803|ref|ZP_08068748.1| recombination protein F [Streptococcus vestibularis ATCC 49124]
 gi|322125765|gb|EFX97083.1| recombination protein F [Streptococcus vestibularis ATCC 49124]
          Length = 366

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 162/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++I  FRNY    + F     IF+G N  GKTNILEAI FL+  R  R  S  ++
Sbjct: 1   MWLEKIDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    +      ++ G+       + LE       R  ++N +    + +   H+ +  
Sbjct: 61  IQFQQNTL-----KLNGIVHRHSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQRNAYLKSTDNVDINFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+++ G ++   R+E I  L      +    +    +L ++   +   + +   +
Sbjct: 176 SVLDEQLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENN-NGI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +   L    K D   + T IGPHR DL     D     + GS G+Q+ +++ + +A 
Sbjct: 235 RESFLTTLKQNHKRDIFKKNTGIGPHRDDLTFYINDMN--ASFGSQGQQRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   TG  PILLLD++ + LD  ++  L   + D   Q FMT T      +L    K
Sbjct: 293 IALIKKVTGEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPPDLK 351

Query: 364 FMRISNHQA 372
              + N   
Sbjct: 352 NFLVKNGNI 360


>gi|294496879|ref|YP_003560579.1| DNA replication and repair protein RecF [Bacillus megaterium QM
           B1551]
 gi|295702246|ref|YP_003595321.1| DNA replication and repair protein RecF [Bacillus megaterium DSM
           319]
 gi|294346816|gb|ADE67145.1| DNA replication and repair protein RecF [Bacillus megaterium QM
           B1551]
 gi|294799905|gb|ADF36971.1| DNA replication and repair protein RecF [Bacillus megaterium DSM
           319]
          Length = 372

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 80/378 (21%), Positives = 162/378 (42%), Gaps = 14/378 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + ++ +RNY    + F+ +  + +G+N  GKTN++E+I  LS  +  R ++  ++
Sbjct: 1   MYIKEITLTNYRNYTKTTIPFENKVNVILGENAQGKTNVMESIFVLSMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +         +A++ G+       + L+       +  + N +  + + +    +    
Sbjct: 61  IKWDCE-----YAKLSGIVEKHRGPVTLDLVISTKGKKAKYNHIEQKKLSQYIGSINTVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   +  ++++++ RN+ L +       D 
Sbjct: 116 FAPEDLNLVKGSPQVRRKFIDMEIGQVSPVYMHDLSRYQKILQQRNQYLKQLQTKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           S    +  Q++E+  KI   R E +  L        +  +     +K+     +D   D 
Sbjct: 176 SLLDVLTLQLSEMAAKILKKRFEFLQLLQQWAEPIHKGISRDLETLKIEYKNSIDVSEDA 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + E Y +K    +  +     TL GPHR DL+    +K +    GS G+Q+   + 
Sbjct: 236 DLSKMLEAYHQKFDKIKSREIDRGVTLAGPHRDDLLFYVNEKDV-QTFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357
           + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T  + +   
Sbjct: 295 LKLAEIELIHQEVGEYPILLLDDVLSELDDFRQSHLLNTIQGK-VQTFVTTTSIEGIHHE 353

Query: 358 LNETAKFMRISNHQALCI 375
             E A    +   Q   +
Sbjct: 354 TLEKAATYHVEAGQIQKV 371


>gi|228478114|ref|ZP_04062725.1| DNA replication and repair protein RecF [Streptococcus salivarius
           SK126]
 gi|228250294|gb|EEK09547.1| DNA replication and repair protein RecF [Streptococcus salivarius
           SK126]
          Length = 366

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++I  FRNY    + F     IF+G N  GKTNILEAI FL+  R  R  S  ++
Sbjct: 1   MWLEKIDIQHFRNYTETSVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    +      ++ G+       + LE       R  ++N +    + +   H+ +  
Sbjct: 61  IQFQQNTL-----KLNGIVHRHSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQRNAYLKSTDNVDINFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+++ G ++   R+E I  L      +    +    +L ++   +   + +   +
Sbjct: 176 SVLDEQLSDFGARVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENN-KVI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +   L    K D   + T +GPHR DL     D     + GS G+Q+ +++ + +A 
Sbjct: 235 RESFLTTLKQNHKRDIFKKNTGVGPHRDDLTFYINDMN--ASFGSQGQQRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   TG  PILLLD++ + LD  ++  L   + D   Q FMT T      +L    K
Sbjct: 293 IALIKKVTGEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPSDLK 351

Query: 364 FMRISNHQA 372
              ++N   
Sbjct: 352 TFLVNNGNI 360


>gi|139474624|ref|YP_001129340.1| recombination protein F [Streptococcus pyogenes str. Manfredo]
 gi|166221873|sp|A2RH21|RECF_STRPG RecName: Full=DNA replication and repair protein recF
 gi|134272871|emb|CAM31153.1| DNA replication and repair protein RecF [Streptococcus pyogenes
           str. Manfredo]
          Length = 368

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 162/369 (43%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +  
Sbjct: 61  IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    +
Sbjct: 176 AVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D   + T +GPHR DL              S G+ + +++ + +A 
Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L E   
Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIH 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFHVTKGTV 361


>gi|322392439|ref|ZP_08065899.1| recombination protein F [Streptococcus peroris ATCC 700780]
 gi|321144431|gb|EFX39832.1| recombination protein F [Streptococcus peroris ATCC 700780]
          Length = 363

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 167/370 (45%), Gaps = 10/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L+I +FRNY    + F+ +  +FVG N  GKTN+LE+I FL+  R  R  +  ++
Sbjct: 1   MWLKNLSIKQFRNYRDTEIEFNPKLNVFVGRNAQGKTNLLESIYFLALTRSHRTKTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +           +V G+      +I LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IQFEEEKL-----QVSGILQKKTATIPLEIDLTQKGRITKVNHLKQARLSDYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLVKGAPAIRRKFIDMELGQIKPIYLSDLSSYNHILKQRNTYLKSSQNIDDTFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ E G ++ I R + I  +     +     +    +LS+       F      L
Sbjct: 176 SVLDDQLVEYGCRVMIHRADFIQKMELFGKKKHFDISDQLEELSICYQPSVNF-IDKEHL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            + +   L   R  D   + T +GPHR D+I       I  + GS G+ + +++ I LA 
Sbjct: 235 ADSFHTALQKSRSRDLFKKNTGVGPHRDDMIFLING--IDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L +T  
Sbjct: 293 IELMESITKESPILLLDDVMSELDNTRQLKLLETISH-NIQTFITTTSLDHLQNLPDTLS 351

Query: 364 FMRISNHQAL 373
              ++N Q +
Sbjct: 352 VFTVNNGQIV 361


>gi|24380484|ref|NP_722439.1| recombination protein F [Streptococcus mutans UA159]
 gi|51316462|sp|Q8DRR3|RECF_STRMU RecName: Full=DNA replication and repair protein recF
 gi|24378515|gb|AAN59745.1|AE015036_4 putative RecF protein, ATPase involved in DNA repair [Streptococcus
           mutans UA159]
          Length = 363

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 163/371 (43%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ +N+  +RNY ++   F     +FVG N  GKTN LEAI FLS  R  R  S  ++
Sbjct: 1   MWIEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G          V G+    +  I LE       R  +IN +    + +    + +  
Sbjct: 61  IQFGQKEL-----NVSGLLNRVNGKIPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L  E   D+ + 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQRNAYLKSEKKVDTDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             ++ Q+ + G K+   R++ I  L+    +Y    +     L ++     KFD     +
Sbjct: 176 FVLDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQEHLKISYLSSVKFDH-KKNI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++ +   L   R+ D   + T +GPHR DL        +  + GS G+ + +++ + LA 
Sbjct: 235 RDNFLNLLQKNRQGDIFKKNTSVGPHRDDLAFFIN--QMNASFGSQGQHRSLILSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L    TG  PILLLD++ + LD  ++  L   + D   Q F+T T       L +  K
Sbjct: 293 IELTKTVTGDYPILLLDDVMSELDNYRQIKLLEGIKD-NVQTFITTTSLEHLQQLPKKLK 351

Query: 364 FMRISNHQALC 374
              I+  + L 
Sbjct: 352 LFTINQGKVLS 362


>gi|323128305|gb|ADX25602.1| recombination protein F [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 368

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +  
Sbjct: 61  IHFDH-STVSLTGKIQRVSGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    +
Sbjct: 176 AVLDEQLASYGTRVMEHRIDFINALEKEANTHHQAISNGLENLSLSYQSSVVFDK-RTNI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D   + T +GPHR DL              S G+ + +++ + +A 
Sbjct: 235 YQQFLHQLKKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L E  +
Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFHVTKGTI 361


>gi|239637289|ref|ZP_04678276.1| DNA replication and repair protein RecF [Staphylococcus warneri
           L37603]
 gi|239597126|gb|EEQ79636.1| DNA replication and repair protein RecF [Staphylococcus warneri
           L37603]
          Length = 371

 Score =  351 bits (900), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 91/377 (24%), Positives = 163/377 (43%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + +    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEQVTIDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFDSE-----YAKIEGELNYRHGTMPLTMFITKRGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G  + RRRF+D  +  I   +   +  ++ +++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPLIRRRFIDMELGQISAVYLNDLSQYQHILKQKNNYLKQLQIGNNTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
           +    +  Q AE  +K+ + R   I  L  L              L+L      KF   D
Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELEQLAQPIHAGITNEREALALKYLPSLKFSHQD 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           QS   + EE    L D  + +      L GPHR DL  +         +GS G+Q+   +
Sbjct: 236 QSESEMLEEILTLLNDNLQREKDRGVCLFGPHRDDLGFNVNGMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   AK  RI+  + +
Sbjct: 354 EIMNNAKLYRINQGEII 370


>gi|307705894|ref|ZP_07642732.1| DNA replication and repair protein recF [Streptococcus mitis SK597]
 gi|307620555|gb|EFN99653.1| DNA replication and repair protein recF [Streptococcus mitis SK597]
          Length = 365

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 164/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEDQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQTIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L +   +   + +    +LS++     K       L
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLEAFGRKKHFELSNQIEELSISYQSSVKI-TDKEDL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T IGPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGIGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L +   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SVQTFITTTSLDHLQNLPKNLS 351

Query: 364 FMRISNHQA 372
              I   + 
Sbjct: 352 IFTIQGGKV 360


>gi|52078495|ref|YP_077286.1| recombination protein F [Bacillus licheniformis ATCC 14580]
 gi|52783859|ref|YP_089688.1| recombination protein F [Bacillus licheniformis ATCC 14580]
 gi|81691262|sp|Q65PL9|RECF_BACLD RecName: Full=DNA replication and repair protein recF
 gi|52001706|gb|AAU21648.1| DNA repair RecF [Bacillus licheniformis ATCC 14580]
 gi|52346361|gb|AAU38995.1| RecF [Bacillus licheniformis ATCC 14580]
          Length = 370

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 160/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +S +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG     + S+ ++    +  +  ++N +  + + +    +    
Sbjct: 61  IRWDED-----YAKIEGRVIKKNGSVPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFLD  +  + P +   +  +++++  RN  L         D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238
           +    +  Q+ E   K+ + R++ ++ L           +    +L+L     L      
Sbjct: 176 TMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSP 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +   Y +     R  +     +L GPHR D++     + +   +GS G+Q+   + 
Sbjct: 236 DLSKMINSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357
           + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T     D  
Sbjct: 295 LKLAEIDLIQEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHK 353

Query: 358 LNETAKFMRISNH 370
               A+  R+ N 
Sbjct: 354 TLNEAEIFRVENG 366


>gi|293364503|ref|ZP_06611228.1| recombination protein F [Streptococcus oralis ATCC 35037]
 gi|307702791|ref|ZP_07639741.1| DNA replication and repair protein recF [Streptococcus oralis ATCC
           35037]
 gi|291317011|gb|EFE57439.1| recombination protein F [Streptococcus oralis ATCC 35037]
 gi|307623647|gb|EFO02634.1| DNA replication and repair protein recF [Streptococcus oralis ATCC
           35037]
          Length = 363

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 162/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +         + G+      SI LE       R  ++N +    + +   H+ +  
Sbjct: 61  IHFDNEQL-----HLSGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ E G ++   R++ I  L     +   + +    +LS++      F      L
Sbjct: 176 SVLDDQLVEYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEELSISYQSSVNFTDD-EQL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 TNSFKIALEKSRSRDLFKKNTGVGPHRDDIAFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I N + 
Sbjct: 352 IFNIQNGKI 360


>gi|311070651|ref|YP_003975574.1| recombination protein F [Bacillus atrophaeus 1942]
 gi|310871168|gb|ADP34643.1| recombination protein F [Bacillus atrophaeus 1942]
          Length = 370

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 83/373 (22%), Positives = 160/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L ++ +RNY  + L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++
Sbjct: 1   MYIQNLELTSYRNYERVELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG     + SI ++    +  +  ++N +  + +      L    
Sbjct: 61  IRWDKD-----YAKIEGRVMKQNGSIPMQLVISKKGKKGKVNHIEQQKLSRYVGALNTIM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFLD  +  + P +   +  +++++  RN  L         D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILTQRNHFLKQLQSRKQTDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238
           +    +  Q+ E   K+ + R++    L           +    +L+L     L+    +
Sbjct: 176 TMLDVLTEQLIETAAKVVVKRLQFTAQLEKWAQPIHSGISRGLEELTLKYQTALEVSDPE 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + + Y +     R+ +     TL GPHR D++     + +   +GS G+Q+   + 
Sbjct: 236 DLSKIGDSYQRAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T     D  
Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNH 370
               A   R+ N 
Sbjct: 354 TLHQAGMFRVQNG 366


>gi|22538290|ref|NP_689141.1| recombination protein F [Streptococcus agalactiae 2603V/R]
 gi|25012150|ref|NP_736545.1| recombination protein F [Streptococcus agalactiae NEM316]
 gi|77413654|ref|ZP_00789839.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           515]
 gi|51316463|sp|Q8DWQ8|RECF_STRA5 RecName: Full=DNA replication and repair protein recF
 gi|51316464|sp|Q8E2K7|RECF_STRA3 RecName: Full=DNA replication and repair protein recF
 gi|22535205|gb|AAN01014.1|AE014289_14 recF protein [Streptococcus agalactiae 2603V/R]
 gi|24413694|emb|CAD47774.1| Unknown [Streptococcus agalactiae NEM316]
 gi|77160309|gb|EAO71435.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           515]
          Length = 369

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK +++  +RNY   ++ F     IF+G N  GKTN LEAI FL+  R  R  S  ++
Sbjct: 1   MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        ++ G        + L+ +     R  ++N +    + +    + +  
Sbjct: 61  VHFKHHD-----VQITGEVIRKSGHLNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+FLD  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A+ G ++   R + I AL+    ++    +     LS+      +F     ++
Sbjct: 176 TVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEF-TDKSSI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +  +L      D   + T IGPHR D+     D  I     S G+Q+ +++ + LA 
Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFASQGQQRSLILSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   T   PILLLD++ + LD  ++  L   + +   Q F+T T      +L +  K
Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351

Query: 364 FMRISNHQA 372
              +S+   
Sbjct: 352 IFNVSDGTI 360


>gi|319651102|ref|ZP_08005236.1| DNA replication and repair protein recF [Bacillus sp. 2_A_57_CT2]
 gi|317397272|gb|EFV77976.1| DNA replication and repair protein recF [Bacillus sp. 2_A_57_CT2]
          Length = 372

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 82/379 (21%), Positives = 164/379 (43%), Gaps = 16/379 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +  +RNY  L + F+ +  + +G+N  GKTN++E+I  L+  +  R ++  D+
Sbjct: 1   MHIEQLLLKNYRNYEELEVNFENKVNVILGENAQGKTNVMESIYVLAMAKSHRTSNDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG       S+ ++    +  +  + N +  + + +   ++ +  
Sbjct: 61  IRWDQE-----YAKIEGRVQKRQGSLPMQLFISKKGKKAKCNHIEQQKLSQYVGNMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D  +  + P +   +  ++++++ RN  L     +   D 
Sbjct: 116 FAPEDLHLVKGSPQIRRRFIDMEIGQVSPVYLHDISQYQKILQQRNHYLKMLQIKKQTDH 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +    +  Q  E+  KI   R E +  L +      +  +     +K+      +   +Q
Sbjct: 176 TMLEILTEQFIEMAAKIVSKRYEFLRLLENWAQPIHEGISRGLETLKIEYKPSAEVSEEQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + + Y  K    +  +     T+ GPHR DLI     + +    GS G+Q+   + 
Sbjct: 236 DLSKMVKVYQNKFAKVKNREIDRGVTMFGPHRDDLIFHVNGRDV-QTFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-- 356
           + LA   LI +  G  PILLLD++ + LD+ +++ L   +     Q F+T T     D  
Sbjct: 295 VKLAEIELIHSEIGEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIDHQ 353

Query: 357 SLNETAKFMRISNHQALCI 375
           +L E A    +   +   I
Sbjct: 354 TLKEAAA-FSVEAGRIKKI 371


>gi|70725005|ref|YP_251919.1| recombination protein F [Staphylococcus haemolyticus JCSC1435]
 gi|82581561|sp|Q4LAL2|RECF_STAHJ RecName: Full=DNA replication and repair protein recF
 gi|68445729|dbj|BAE03313.1| DNA repair and genetic recombination protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 371

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 93/377 (24%), Positives = 162/377 (42%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLKTLQLENYRNYEEVTLECHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      +A++EG+      ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNSE-----YAKIEGVLNYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKQDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
           +    +  Q A+  + + + R   I  L SL              LSLT     K     
Sbjct: 176 TMLEVLNQQFAQYALNVTLRREHFIKELESLAKPIHAGITNERETLSLTYLPSIKLSDMS 235

Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                L +E    L D  K +      L GPHR DL  +  D      +GS G+Q+   +
Sbjct: 236 KGEQTLWDEVITLLNDNIKREMDRGVCLFGPHRDDLGFNVNDMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   AK  RI+  + +
Sbjct: 354 EIMNNAKLYRINQGEII 370


>gi|307710347|ref|ZP_07646788.1| DNA replication and repair protein recF [Streptococcus mitis SK564]
 gi|307618939|gb|EFN98074.1| DNA replication and repair protein recF [Streptococcus mitis SK564]
          Length = 363

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 164/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+   G ++   R++ I  L S   +   + +    +LS++     K       L
Sbjct: 176 SVLDDQLVNYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVKL-TDKEDL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I + + 
Sbjct: 352 IFTIQDGKV 360


>gi|89101116|ref|ZP_01173952.1| recombination protein F [Bacillus sp. NRRL B-14911]
 gi|89084171|gb|EAR63336.1| recombination protein F [Bacillus sp. NRRL B-14911]
          Length = 372

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 158/374 (42%), Gaps = 16/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +  +RNY SL + F+ +  + +G N  GKTN++E+I  L+  +  R ++  ++
Sbjct: 1   MFIEQLLLRNYRNYESLEVQFEDKVNVIIGQNAQGKTNVMESIYVLAMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG        + ++    +  +  + N +  + + +   ++ +  
Sbjct: 61  IRWDED-----YAKIEGRVRKNHGPLPMQLVISKKGKKAKCNHIEQQRLSQYVGNMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D  +  + P +   +  + ++++ RN  L         D 
Sbjct: 116 FAPEDLHLVKGSPQVRRRFIDMEIGQVSPVYLHDVGQYNKILQQRNHYLKLLQTRKQTDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +    +  Q  E+  +I   R E +  L    M   +  +     +K+      D    Q
Sbjct: 176 AMLEILTEQFIEMAARIVAKRFEFLKLLQKWAMPIHEGISRGLETLKIEYKPSADVSDGQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + + Y +K    R  +     T+ GPHR DL      + +    GS G+Q+   + 
Sbjct: 236 ELSKMIKVYQEKFEKVRGREIDRGVTMFGPHRDDLAFYVNGRDV-QTFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-- 356
           + LA   LI +  G  PILLLD++ + LD+ +++ L   +     Q F+T T     D  
Sbjct: 295 LKLAEIELIHSEIGEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIDHQ 353

Query: 357 SLNETAKFMRISNH 370
           +L E A    +   
Sbjct: 354 TLKEAAA-FEVEAG 366


>gi|71904550|ref|YP_281353.1| recombination protein F [Streptococcus pyogenes MGAS6180]
 gi|94993383|ref|YP_601482.1| recombination protein F [Streptococcus pyogenes MGAS2096]
 gi|97180999|sp|Q48QL2|RECF_STRPM RecName: Full=DNA replication and repair protein recF
 gi|166221869|sp|Q1J973|RECF_STRPB RecName: Full=DNA replication and repair protein recF
 gi|71803645|gb|AAX72998.1| DNA replication and repair protein recF [Streptococcus pyogenes
           MGAS6180]
 gi|94546891|gb|ABF36938.1| DNA replication and repair protein recF [Streptococcus pyogenes
           MGAS2096]
          Length = 368

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +  
Sbjct: 61  IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    +
Sbjct: 176 AVLDEQLAGYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D   + T +GPHR +L              S G+ + +++ + +A 
Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDNLAFYINGMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L E  +
Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFHVTKGTV 361


>gi|223932878|ref|ZP_03624874.1| DNA replication and repair protein RecF [Streptococcus suis
           89/1591]
 gi|330833788|ref|YP_004402613.1| DNA replication and repair protein RecF [Streptococcus suis ST3]
 gi|223898459|gb|EEF64824.1| DNA replication and repair protein RecF [Streptococcus suis
           89/1591]
 gi|329308011|gb|AEB82427.1| DNA replication and repair protein RecF [Streptococcus suis ST3]
          Length = 364

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 163/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRNY  L + F     +F+G+N  GKTNILE+I  L+  R  R  +  D+
Sbjct: 1   MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +            + G+       + L+       R  ++N +    +     H+ +  
Sbjct: 61  LQFQEKEL-----SISGLLHRTSGKVPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQRNTYLKSTDKIDENFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+AE G ++   R++ +  L       VQ+ +    +L++      K       L
Sbjct: 176 SVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVN-L 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L   RK D   + T +GPHR D+            +GS G+ + +++ + LA 
Sbjct: 235 IDKFLTELERCRKRDLFKKNTGVGPHRDDVAFFINGMN--AHYGSQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   T   PILLLD++ + LD +++  L   +TD   Q F+T T       L ++ K
Sbjct: 293 IELMKEVTREYPILLLDDVMSELDNNRQIKLLETITDT-IQTFITTTSLDHLHKLPDSLK 351

Query: 364 FMRISNHQA 372
              I + + 
Sbjct: 352 IFHIESGKV 360


>gi|15675937|ref|NP_270111.1| recombination protein F [Streptococcus pyogenes M1 GAS]
 gi|71911668|ref|YP_283218.1| recombination protein F [Streptococcus pyogenes MGAS5005]
 gi|81171138|sp|P0C0D1|RECF_STRP1 RecName: Full=DNA replication and repair protein recF
 gi|13623177|gb|AAK34832.1| RecF protein [Streptococcus pyogenes M1 GAS]
 gi|71854450|gb|AAZ52473.1| DNA replication and repair protein [Streptococcus pyogenes
           MGAS5005]
          Length = 368

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +  
Sbjct: 61  IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    +
Sbjct: 176 AVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D   + T +GPHR +L              S G+ + +++ + +A 
Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDELAFYINGMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L E  +
Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFHVTKGTV 361


>gi|322412900|gb|EFY03808.1| recombination protein F [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 368

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 161/369 (43%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIKELELKHYRNYDHLLTSFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +  
Sbjct: 61  IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A  G ++   R+  IN L      + Q  +     LSL+      FD+    +
Sbjct: 176 AVLDEQLASYGTRVMEHRINFINTLEKEANTHHQAISNGLENLSLSYQSSVVFDK-KTNI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D   + T +GPHR DL              S G+ + +++ + +A 
Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L E  +
Sbjct: 293 VSLMKVLTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFHVTKGTV 361


>gi|157149944|ref|YP_001449331.1| recombination protein F [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189039648|sp|A8AU71|RECF_STRGC RecName: Full=DNA replication and repair protein recF
 gi|157074738|gb|ABV09421.1| DNA replication and repair protein RecF [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 361

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 162/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRNY    + F +   IF+G N  GKTNILE+I FL+  R  R  S  D 
Sbjct: 1   MWLKSLTLKHFRNYQDAEINFHSGLNIFLGQNAQGKTNILESIYFLALTRSHRTRSDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        +V G+      +I L+       R  +IN +    + +    + +  
Sbjct: 61  IHFQEKDL-----KVSGILEKKTGTIPLDIELTAKGRITKINHLKQNRLSDYIGAMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPIYLADLSNYNHVLKQRNSYLKNSQNIDENFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ E G ++   R++ +  L     E     +     L++         Q   ++
Sbjct: 176 SVLDEQLIEYGCRVVKHRLDFLKKLEIFAQEKHLDISQKKETLTIDYLSSVPL-QDIDSI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +   L   RK D   + T +GPHR D+        +   +GS G+ + V++ + LA 
Sbjct: 235 EESFRLSLSKNRKRDLFKQNTGVGPHRDDIAFFIN--QMDANYGSQGQHRSVVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI N T  +PILLLD++ + LD D++  L   ++    Q F+T T      +L +  K
Sbjct: 293 IKLIENITKESPILLLDDVMSELDNDRQLKLLETISQ-EIQTFITTTTLEHLKNLPKDIK 351

Query: 364 FMRISNHQA 372
              ISN   
Sbjct: 352 IFEISNGNI 360


>gi|146319836|ref|YP_001199548.1| recombination protein F [Streptococcus suis 05ZYH33]
 gi|146322027|ref|YP_001201738.1| recombination protein F [Streptococcus suis 98HAH33]
 gi|253752812|ref|YP_003025953.1| DNA replication and repair protein RecF [Streptococcus suis SC84]
 gi|253754637|ref|YP_003027778.1| DNA replication and repair protein RecF [Streptococcus suis P1/7]
 gi|253756570|ref|YP_003029710.1| DNA replication and repair protein RecF [Streptococcus suis BM407]
 gi|166221874|sp|A4W4P9|RECF_STRS2 RecName: Full=DNA replication and repair protein recF
 gi|166221876|sp|A4VYF9|RECF_STRSY RecName: Full=DNA replication and repair protein recF
 gi|145690642|gb|ABP91148.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus
           suis 05ZYH33]
 gi|145692833|gb|ABP93338.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus
           suis 98HAH33]
 gi|251817101|emb|CAZ52753.1| DNA replication and repair protein RecF [Streptococcus suis SC84]
 gi|251819034|emb|CAZ56881.1| DNA replication and repair protein RecF [Streptococcus suis BM407]
 gi|251820883|emb|CAR47649.1| DNA replication and repair protein RecF [Streptococcus suis P1/7]
 gi|292559432|gb|ADE32433.1| RecF protein [Streptococcus suis GZ1]
 gi|319759228|gb|ADV71170.1| recombination protein F [Streptococcus suis JS14]
          Length = 364

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 162/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRNY  L + F     +F+G+N  GKTNILE+I  L+  R  R  +  D+
Sbjct: 1   MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +            + G+       + L+       R  ++N +    +     H+ +  
Sbjct: 61  LQFQEKEL-----SISGLLHRTSGKVPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQRNTYLKSTDKIDENFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+AE G ++   R++ +  L       VQ+ +    +L++      +       L
Sbjct: 176 SVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVN-L 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L   RK D   + T +GPHR D+            + S G+ + +++ + LA 
Sbjct: 235 IDKFLTELEKSRKRDLFKKNTGVGPHRDDVAFFINGMN--AHYASQGQHRSLVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   T   PILLLD++ + LD +++  L   +TD   Q F+T T       L ++ K
Sbjct: 293 IELMKEVTREYPILLLDDVMSELDNNRQIKLLETITDT-IQTFITTTSLDHLHKLPDSLK 351

Query: 364 FMRISNHQA 372
              I + + 
Sbjct: 352 IFHIESGKV 360


>gi|330685260|gb|EGG96921.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           VCU121]
          Length = 371

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 164/377 (43%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + +    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEQVTIDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFDSE-----YAKIEGDLNYRHGTMPLTMFITKRGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G  + RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPLIRRRFIDMELGQISAVYLNDLSQYQRILKQKNNYLKQLQIGNKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
           +    +  Q AE  +K+ + R   I  L  L             +L+L      K    D
Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELEQLAQPIHAGITNEREQLALKYLPSLKLSHQD 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           Q+   + EE    L D  + +      L GPHR DL  +         +GS G+Q+   +
Sbjct: 236 QTESEMLEEILTLLNDNLQREKDRGVCLFGPHRDDLGFNVNGMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   AK  RI+  + +
Sbjct: 354 EIMNNAKLYRINQGEII 370


>gi|307707884|ref|ZP_07644361.1| DNA replication and repair protein RecF [Streptococcus mitis NCTC
           12261]
 gi|307616144|gb|EFN95340.1| DNA replication and repair protein RecF [Streptococcus mitis NCTC
           12261]
          Length = 365

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 164/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  IF+G N  GKTNILEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNIFLGRNAQGKTNILEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L     +   + +    +LS++     K       L
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLEHFGRKKHFELSNQIEELSISYQSSVK-STEKEDL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I + + 
Sbjct: 352 IFTIQDGKV 360


>gi|251794040|ref|YP_003008771.1| DNA replication and repair protein RecF [Paenibacillus sp. JDR-2]
 gi|247541666|gb|ACS98684.1| DNA replication and repair protein RecF [Paenibacillus sp. JDR-2]
          Length = 369

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 158/374 (42%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  +RNY  L LV D +  +FVG N  GKTN+LEAI  L+  +  R +   ++
Sbjct: 1   MFLKSIQLQNYRNYKELELVTDNKVNLFVGPNAQGKTNLLEAIFALALTKSHRTSKDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               + S     AR+ G       ++KL+       +  +IN +  R + +    L +  
Sbjct: 61  IGWEADS-----ARIHGEVEKRYGTLKLDLMYSSQGKKAKINGLEQRKLSDFIGSLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    I  G    RRRFLD  +  + P +   +  + +++  RN  L     G    +
Sbjct: 116 FAPEDLEIVKGTPGIRRRFLDMEIGQVQPGYLHTLTQYTKVLAQRNNYLKTATPGGSQQA 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL--DGKFDQS 239
                  Q+AE GVKI   R   I+ L                +L++      DG   + 
Sbjct: 176 MLEIWNMQLAEHGVKIMKKRKHFIHKLQRWAEHIHSGITAGGERLTIEYRPSFDGGASED 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L E++  KL   +  +     +L+GPHR D+      K   + +GS G+Q+   + +
Sbjct: 236 ETVLFEQFMLKLSQVKDQEIRRGMSLVGPHRDDMAFFINGKEAAV-YGSQGQQRTTALSL 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI    G  P+LLLD++ + LD++++  L         Q F+T T     + S 
Sbjct: 295 KLAEIELICEEIGEYPLLLLDDVLSELDQNRQTQLIETFQSK-VQTFITTTGLESVNVSK 353

Query: 359 NETAKFMRISNHQA 372
            + A    +   + 
Sbjct: 354 LQGAGIYDVREGRV 367


>gi|253730403|ref|ZP_04864568.1| recombination protein F [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725883|gb|EES94612.1| recombination protein F [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 370

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 162/376 (43%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D         +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  P+LLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPVLLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNHQAL 373
           +   AK  RI+  + +
Sbjct: 354 IMNNAKLYRINQGEII 369


>gi|94989496|ref|YP_597597.1| recombination protein F [Streptococcus pyogenes MGAS9429]
 gi|166221870|sp|Q1JJC0|RECF_STRPC RecName: Full=DNA replication and repair protein recF
 gi|94543004|gb|ABF33053.1| DNA replication and repair protein [Streptococcus pyogenes
           MGAS9429]
          Length = 368

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +  
Sbjct: 61  IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    +
Sbjct: 176 AVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D   + T +GPHR +L              S G+ + +++ + +A 
Sbjct: 235 YQQFLYQLEKNHQKDFFRKNTSVGPHRDELAFYINGMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L E  +
Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFHVTKGTV 361


>gi|168484319|ref|ZP_02709271.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042411|gb|EDT50457.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC1873-00]
 gi|332198850|gb|EGJ12932.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA47368]
          Length = 365

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSVQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L S   +   + +    +LS++             L
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I N +A
Sbjct: 352 IFTIQNGKA 360


>gi|242243252|ref|ZP_04797697.1| recombination protein F [Staphylococcus epidermidis W23144]
 gi|242233201|gb|EES35513.1| recombination protein F [Staphylococcus epidermidis W23144]
          Length = 371

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 92/377 (24%), Positives = 163/377 (43%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNSD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK---FD 237
           +    +  Q AE  +K+ + R   I  L +L              L+L      K   ++
Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELETLAQPIHAGITNHRETLTLDYVPSLKLSNYE 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +   L EE    L D  + +      L GPHR DL  +         +GS G+Q+   +
Sbjct: 236 ANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFNVNGMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVEGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   AK  RIS  + L
Sbjct: 354 EIMNNAKLYRISQGEIL 370


>gi|212637853|ref|YP_002314373.1| recombination protein F [Anoxybacillus flavithermus WK1]
 gi|212559333|gb|ACJ32388.1| Recombinational DNA repair ATPase RecF [Anoxybacillus flavithermus
           WK1]
          Length = 379

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 14/372 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  +RNY      F  +  + +G+N  GKTNI+E+I  LS  +  R  +  D+ R
Sbjct: 11  LEQLTLKNYRNYEQGCWQFQNKVNVILGENAQGKTNIMESIYVLSMAKSHRTTNDKDLIR 70

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                    +A++EG  G  + SI L+    +  +  ++N +    +     H+ +    
Sbjct: 71  WDED-----YAKIEGKVGKKNGSIFLQLTVSKKGKKAKLNHIEQAKLSRYVGHMNVVMFA 125

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSW 182
           P    +  G    RRRF+D  +  + P +   +  ++++++ RN+ L     +   D ++
Sbjct: 126 PEDLNLVKGSPQIRRRFIDMEIGQVSPVYMHELGQYQKVLQQRNQYLKLLQSKKQTDETF 185

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQSF 240
              +  Q+ EL  KI + R E I  L +       + +  + +L++     +     Q +
Sbjct: 186 LDVLTEQLVELAAKITLKRYEFIELLQTWAKPIHAEISRGNEQLAIHYCPSVHVLDKQQW 245

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             + E Y  K    +  +     TLIGPHR DL      K +    GS G+Q+   + + 
Sbjct: 246 SRIVEVYNDKFARIKTKEIERGTTLIGPHRDDLSFTINGKDV-QTFGSQGQQRTTALSLK 304

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LN 359
           LA   LI +  G  PILLLD++ + LD+ ++  L   +     Q F+T T     +  + 
Sbjct: 305 LAEIDLIFSEIGEYPILLLDDVLSELDDFRQTHLLNAIQGK-VQTFVTTTSIDGIEHRVI 363

Query: 360 ETAKFMRISNHQ 371
             A    + + Q
Sbjct: 364 RDADVYEVVSGQ 375


>gi|312864128|ref|ZP_07724363.1| DNA replication and repair protein RecF [Streptococcus vestibularis
           F0396]
 gi|311100360|gb|EFQ58568.1| DNA replication and repair protein RecF [Streptococcus vestibularis
           F0396]
          Length = 366

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 162/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++I  FRNY    + F     IF+G N  GKTNILEAI FL+  R  R  S  ++
Sbjct: 1   MWLEKIDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    +      ++ G+       + LE       R  ++N +    + +   H+ +  
Sbjct: 61  IQFQQNTL-----KLNGIVHRHSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D ++ 
Sbjct: 116 FAPENLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQRNAYLKSTDNVDINFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+++ G ++   R+E I  L      +    +    +L ++   +   + +   +
Sbjct: 176 SVLDEQLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENN-NVI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +   L    K D   + T +GPHR DL     D     + GS G+Q+ +++ + +A 
Sbjct: 235 RESFLTTLKQNHKRDIFKKNTGVGPHRDDLTFYINDMN--ASFGSQGQQRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   TG  PILLLD++ + LD  ++  L   + +   Q FMT T      +L    K
Sbjct: 293 IALIKKVTGEFPILLLDDVMSELDNHRQLKLLESIGE-EVQTFMTTTSLDHLSNLPPDLK 351

Query: 364 FMRISNHQA 372
              + N   
Sbjct: 352 TFLVKNGNI 360


>gi|15922994|ref|NP_370528.1| recombination protein F [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925709|ref|NP_373242.1| recombination protein F [Staphylococcus aureus subsp. aureus N315]
 gi|21281733|ref|NP_644819.1| recombination protein F [Staphylococcus aureus subsp. aureus MW2]
 gi|49482257|ref|YP_039481.1| recombination protein F [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49484916|ref|YP_042137.1| recombination protein F [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651112|ref|YP_184915.1| recombination protein F [Staphylococcus aureus subsp. aureus COL]
 gi|88193827|ref|YP_498612.1| recombination protein F [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|148266451|ref|YP_001245394.1| recombination protein F [Staphylococcus aureus subsp. aureus JH9]
 gi|150392484|ref|YP_001315159.1| recombination protein F [Staphylococcus aureus subsp. aureus JH1]
 gi|151220215|ref|YP_001331038.1| recombination protein F [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|156978335|ref|YP_001440594.1| recombination protein F [Staphylococcus aureus subsp. aureus Mu3]
 gi|161508270|ref|YP_001573929.1| recombination protein F [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141519|ref|ZP_03566012.1| recombination protein F [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253316842|ref|ZP_04840055.1| recombination protein F [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|253733835|ref|ZP_04868000.1| recombination protein F [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|254663938|ref|ZP_05143410.1| recombination protein F [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257424200|ref|ZP_05600629.1| recombination protein F [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426877|ref|ZP_05603279.1| recombination protein F [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429513|ref|ZP_05605900.1| recombination protein F [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432160|ref|ZP_05608523.1| recombination protein F [Staphylococcus aureus subsp. aureus E1410]
 gi|257435121|ref|ZP_05611172.1| recombination protein F [Staphylococcus aureus subsp. aureus M876]
 gi|257793542|ref|ZP_05642521.1| recombination protein RecF [Staphylococcus aureus A9781]
 gi|258411152|ref|ZP_05681431.1| recombination protein RecF [Staphylococcus aureus A9763]
 gi|258420944|ref|ZP_05683878.1| recombination protein F [Staphylococcus aureus A9719]
 gi|258438583|ref|ZP_05689806.1| recombination protein F [Staphylococcus aureus A9299]
 gi|258443961|ref|ZP_05692299.1| recombination protein F [Staphylococcus aureus A8115]
 gi|258446223|ref|ZP_05694383.1| recombination protein F [Staphylococcus aureus A6300]
 gi|258449118|ref|ZP_05697224.1| recombination protein RecF [Staphylococcus aureus A6224]
 gi|258451363|ref|ZP_05699394.1| recombination protein F [Staphylococcus aureus A5948]
 gi|258454404|ref|ZP_05702372.1| recombination protein F [Staphylococcus aureus A5937]
 gi|262049436|ref|ZP_06022308.1| DNA replication and repair protein [Staphylococcus aureus D30]
 gi|262051892|ref|ZP_06024107.1| DNA replication and repair protein [Staphylococcus aureus 930918-3]
 gi|269201694|ref|YP_003280963.1| recombination protein F [Staphylococcus aureus subsp. aureus ED98]
 gi|282894283|ref|ZP_06302513.1| DNA replication and repair protein recF [Staphylococcus aureus
           A8117]
 gi|282907051|ref|ZP_06314899.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282910030|ref|ZP_06317838.1| recombination protein RecF [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912278|ref|ZP_06320074.1| recombination protein RecF [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282912918|ref|ZP_06320710.1| RecF protein [Staphylococcus aureus subsp. aureus M899]
 gi|282920723|ref|ZP_06328442.1| DNA replication and repair protein recF [Staphylococcus aureus
           A9765]
 gi|282922546|ref|ZP_06330236.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus C101]
 gi|282927754|ref|ZP_06335368.1| DNA replication and repair protein recF [Staphylococcus aureus
           A10102]
 gi|283959488|ref|ZP_06376929.1| RecF protein [Staphylococcus aureus subsp. aureus A017934/97]
 gi|284023041|ref|ZP_06377439.1| recombination protein F [Staphylococcus aureus subsp. aureus 132]
 gi|293497971|ref|ZP_06665825.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293511561|ref|ZP_06670255.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus M809]
 gi|293550170|ref|ZP_06672842.1| RecF protein [Staphylococcus aureus subsp. aureus M1015]
 gi|294849832|ref|ZP_06790572.1| DNA replication and repair protein recF [Staphylococcus aureus
           A9754]
 gi|295406868|ref|ZP_06816672.1| DNA replication and repair protein recF [Staphylococcus aureus
           A8819]
 gi|295429301|ref|ZP_06821923.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296275683|ref|ZP_06858190.1| recombination protein F [Staphylococcus aureus subsp. aureus MR1]
 gi|297209448|ref|ZP_06925846.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297245903|ref|ZP_06929765.1| DNA replication and repair protein recF [Staphylococcus aureus
           A8796]
 gi|297589197|ref|ZP_06947838.1| recombination protein F [Staphylococcus aureus subsp. aureus MN8]
 gi|300911472|ref|ZP_07128921.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH70]
 gi|304379952|ref|ZP_07362681.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|56749543|sp|Q6GD86|RECF_STAAS RecName: Full=DNA replication and repair protein recF
 gi|56749590|sp|Q6GKU1|RECF_STAAR RecName: Full=DNA replication and repair protein recF
 gi|56753681|sp|P68861|RECF_STAAM RecName: Full=DNA replication and repair protein recF
 gi|56753682|sp|P68862|RECF_STAAN RecName: Full=DNA replication and repair protein recF
 gi|56753685|sp|P68863|RECF_STAAU RecName: Full=DNA replication and repair protein recF
 gi|56753686|sp|P68864|RECF_STAAW RecName: Full=DNA replication and repair protein recF
 gi|81695634|sp|Q5HJZ2|RECF_STAAC RecName: Full=DNA replication and repair protein recF
 gi|122540544|sp|Q2G275|RECF_STAA8 RecName: Full=DNA replication and repair protein recF
 gi|166221868|sp|A7WWN1|RECF_STAA1 RecName: Full=DNA replication and repair protein recF
 gi|172048751|sp|A6QD43|RECF_STAAE RecName: Full=DNA replication and repair protein recF
 gi|189039645|sp|A6TXF4|RECF_STAA2 RecName: Full=DNA replication and repair protein recF
 gi|189039646|sp|A5INP5|RECF_STAA9 RecName: Full=DNA replication and repair protein recF
 gi|189039647|sp|A8YYS7|RECF_STAAT RecName: Full=DNA replication and repair protein recF
 gi|13699921|dbj|BAB41220.1| DNA repair and genetic recombination protein [Staphylococcus aureus
           subsp. aureus N315]
 gi|14245771|dbj|BAB56166.1| DNA repair and genetic recombination protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21203168|dbj|BAB93869.1| DNA repair and genetic recombination protein [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49240386|emb|CAG39032.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|49243359|emb|CAG41776.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57285298|gb|AAW37392.1| recF protein [Staphylococcus aureus subsp. aureus COL]
 gi|87201385|gb|ABD29195.1| DNA replication and repair protein, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147739520|gb|ABQ47818.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149944936|gb|ABR50872.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus JH1]
 gi|150373015|dbj|BAF66275.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156720470|dbj|BAF76887.1| DNA repair and genetic recombination protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160367079|gb|ABX28050.1| recombination protein RecF [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728138|gb|EES96867.1| recombination protein F [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257273218|gb|EEV05320.1| recombination protein F [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276508|gb|EEV07959.1| recombination protein F [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279994|gb|EEV10581.1| recombination protein F [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283039|gb|EEV13171.1| recombination protein F [Staphylococcus aureus subsp. aureus E1410]
 gi|257285717|gb|EEV15833.1| recombination protein F [Staphylococcus aureus subsp. aureus M876]
 gi|257787514|gb|EEV25854.1| recombination protein RecF [Staphylococcus aureus A9781]
 gi|257840037|gb|EEV64502.1| recombination protein RecF [Staphylococcus aureus A9763]
 gi|257843134|gb|EEV67549.1| recombination protein F [Staphylococcus aureus A9719]
 gi|257848142|gb|EEV72134.1| recombination protein F [Staphylococcus aureus A9299]
 gi|257850845|gb|EEV74789.1| recombination protein F [Staphylococcus aureus A8115]
 gi|257855049|gb|EEV77992.1| recombination protein F [Staphylococcus aureus A6300]
 gi|257857551|gb|EEV80446.1| recombination protein RecF [Staphylococcus aureus A6224]
 gi|257860893|gb|EEV83710.1| recombination protein F [Staphylococcus aureus A5948]
 gi|257863498|gb|EEV86258.1| recombination protein F [Staphylococcus aureus A5937]
 gi|259160219|gb|EEW45248.1| DNA replication and repair protein [Staphylococcus aureus 930918-3]
 gi|259162433|gb|EEW47003.1| DNA replication and repair protein [Staphylococcus aureus D30]
 gi|262073984|gb|ACY09957.1| recombination protein F [Staphylococcus aureus subsp. aureus ED98]
 gi|269939530|emb|CBI47888.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282314767|gb|EFB45153.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus C101]
 gi|282323018|gb|EFB53337.1| RecF protein [Staphylococcus aureus subsp. aureus M899]
 gi|282323974|gb|EFB54290.1| recombination protein RecF [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326096|gb|EFB56401.1| recombination protein RecF [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329950|gb|EFB59471.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282590514|gb|EFB95592.1| DNA replication and repair protein recF [Staphylococcus aureus
           A10102]
 gi|282594131|gb|EFB99119.1| DNA replication and repair protein recF [Staphylococcus aureus
           A9765]
 gi|282763328|gb|EFC03458.1| DNA replication and repair protein recF [Staphylococcus aureus
           A8117]
 gi|283789080|gb|EFC27907.1| RecF protein [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919217|gb|EFD96293.1| RecF protein [Staphylococcus aureus subsp. aureus M1015]
 gi|291096902|gb|EFE27160.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291465519|gb|EFF08051.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus M809]
 gi|294823380|gb|EFG39809.1| DNA replication and repair protein recF [Staphylococcus aureus
           A9754]
 gi|294968333|gb|EFG44358.1| DNA replication and repair protein recF [Staphylococcus aureus
           A8819]
 gi|295127060|gb|EFG56704.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296885909|gb|EFH24844.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|297177268|gb|EFH36521.1| DNA replication and repair protein recF [Staphylococcus aureus
           A8796]
 gi|297577708|gb|EFH96421.1| recombination protein F [Staphylococcus aureus subsp. aureus MN8]
 gi|298693326|gb|ADI96548.1| recF protein [Staphylococcus aureus subsp. aureus ED133]
 gi|300887651|gb|EFK82847.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH70]
 gi|302331776|gb|ADL21969.1| DNA repair and genetic recombination protein [Staphylococcus aureus
           subsp. aureus JKD6159]
 gi|302749915|gb|ADL64092.1| DNA repair and genetic recombination protein [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304341532|gb|EFM07442.1| recombination protein F [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312436855|gb|ADQ75926.1| recombination protein F [Staphylococcus aureus subsp. aureus TCH60]
 gi|312828567|emb|CBX33409.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129547|gb|EFT85539.1| recombination protein F [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195230|gb|EFU25618.1| recombination protein F [Staphylococcus aureus subsp. aureus CGS00]
 gi|315197922|gb|EFU28255.1| recombination protein F [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141421|gb|EFW33264.1| recombination protein F [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144404|gb|EFW36169.1| recombination protein F [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|323439695|gb|EGA97413.1| recombination protein F [Staphylococcus aureus O11]
 gi|323443268|gb|EGB00885.1| recombination protein F [Staphylococcus aureus O46]
 gi|329312727|gb|AEB87140.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725526|gb|EGG62005.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329731646|gb|EGG68006.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 370

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 162/376 (43%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D         +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNHQAL 373
           +   AK  RI+  + +
Sbjct: 354 IMNNAKLYRINQGEII 369


>gi|307711205|ref|ZP_07647627.1| DNA replication and repair protein recF [Streptococcus mitis SK321]
 gi|307617167|gb|EFN96345.1| DNA replication and repair protein recF [Streptococcus mitis SK321]
          Length = 365

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 164/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKQTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L S   +   + +    +LS++             L
Sbjct: 176 SVLDDQLIDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKEDL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I + + 
Sbjct: 352 IFTIQDGKV 360


>gi|55823899|ref|YP_142340.1| recombination protein F [Streptococcus thermophilus CNRZ1066]
 gi|116628673|ref|YP_821292.1| recombination protein F [Streptococcus thermophilus LMD-9]
 gi|81676484|sp|Q5LXI7|RECF_STRT1 RecName: Full=DNA replication and repair protein recF
 gi|122266733|sp|Q03I76|RECF_STRTD RecName: Full=DNA replication and repair protein recF
 gi|55739884|gb|AAV63525.1| DNA repair and genetic recombination protein [Streptococcus
           thermophilus CNRZ1066]
 gi|116101950|gb|ABJ67096.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus
           thermophilus LMD-9]
 gi|312279328|gb|ADQ63985.1| DNA replication and repair protein recF [Streptococcus thermophilus
           ND03]
          Length = 366

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++I  FRNY+   + F     IF+G N  GKTNILEAI FL+  R  R     ++
Sbjct: 1   MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    S      ++ G+      ++ LE       R  ++N +    + +   H+ +  
Sbjct: 61  IQFQQNSL-----KLNGIVHRHSGNLPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNAYLKSTDKVDINFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+A+ G ++   R+E I  L      +    +    +L ++   +    Q+   +
Sbjct: 176 SVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPI-QNSKDI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +   L    K D   + T +GPHR DL     D     + GS G+Q+ +++ + +A 
Sbjct: 235 REAFLTTLNQNHKRDIFKKNTGVGPHRDDLKFYINDMN--ASFGSQGQQRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   T   PILLLD++ + LD  ++  L   + D   Q FMT T      +L    K
Sbjct: 293 IALIKKVTEEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPPNLK 351

Query: 364 FMRISNHQA 372
              + N   
Sbjct: 352 TFLVKNGTI 360


>gi|283469233|emb|CAQ48444.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 370

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 162/376 (43%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKETLSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D         +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSIDGIDHE 353

Query: 358 LNETAKFMRISNHQAL 373
           +   AK  RI+  + +
Sbjct: 354 IMNNAKLYRINQGEII 369


>gi|329732499|gb|EGG68849.1| DNA replication and repair protein RecF [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 370

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 162/376 (43%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG       ++ L     +  + +++N +    + +   H+ +  
Sbjct: 61  IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHINVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D         +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNHQAL 373
           +   AK  RI+  + +
Sbjct: 354 IMNNAKLYRINQGEII 369


>gi|258423234|ref|ZP_05686126.1| recombination protein F [Staphylococcus aureus A9635]
 gi|257846563|gb|EEV70585.1| recombination protein F [Staphylococcus aureus A9635]
          Length = 370

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 161/376 (42%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +     EE    L D  + +     +L GPHR D+  D         +GS G+Q+   + 
Sbjct: 236 NEATRLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNHQAL 373
           +   AK  RI+  + +
Sbjct: 354 IMNNAKLYRINQGEII 369


>gi|55821982|ref|YP_140424.1| recombination protein F [Streptococcus thermophilus LMG 18311]
 gi|81676637|sp|Q5M237|RECF_STRT2 RecName: Full=DNA replication and repair protein recF
 gi|55737967|gb|AAV61609.1| DNA repair and genetic recombination protein [Streptococcus
           thermophilus LMG 18311]
          Length = 366

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++I  FRNY+   + F     IF+G N  GKTNILEAI FL+  R  R     ++
Sbjct: 1   MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    S      ++ G+      ++ LE       R  ++N +    + +   H+ +  
Sbjct: 61  IQFQQNSL-----KLNGIVHRHSGNLPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNAYLKSTDKVDINFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+A+ G ++   R+E I  L      +    +    +L ++   +    Q+   +
Sbjct: 176 SVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPI-QNSKDI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +   L    K D   + T +GPHR DL     D     + GS G+Q+ +++ + +A 
Sbjct: 235 REAFLTILNQNHKRDIFKKNTGVGPHRDDLKFYINDMN--ASFGSQGQQRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   T   PILLLD++ + LD  ++  L   + D   Q FMT T      +L    K
Sbjct: 293 IALIKKVTEEFPILLLDDVMSELDNHRQLKLLESI-DEEVQTFMTTTSLDHLSNLPPNLK 351

Query: 364 FMRISNHQA 372
              + N   
Sbjct: 352 TFLVKNGTI 360


>gi|289168901|ref|YP_003447170.1| recombination protein recF [Streptococcus mitis B6]
 gi|288908468|emb|CBJ23310.1| recombination protein recF [Streptococcus mitis B6]
          Length = 365

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 164/370 (44%), Gaps = 10/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQNLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L     +   + +    +LS++         +   L
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLEYFGCKKHFELSNQIEELSISYQSSVNITDN-QNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYLNG--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISH-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQAL 373
              I + +  
Sbjct: 352 IFTIQDGKVF 361


>gi|251783552|ref|YP_002997857.1| recombination protein F [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242392184|dbj|BAH82643.1| recombination protein F [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 368

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIKELELKYYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +  
Sbjct: 61  IHFDH-STVSLTGKIQRVSGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    +
Sbjct: 176 AVLDEQLASYGTRVMEHRIDFINALEKEANTHHQAISNGLENLSLSYQSSVVFDK-RTNI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D   + T +GPHR DL              S G+ + +++ + +A 
Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L E  +
Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFHVTKGTI 361


>gi|182685163|ref|YP_001836910.1| recombination protein F [Streptococcus pneumoniae CGSP14]
 gi|226737843|sp|B2INP4|RECF_STRPS RecName: Full=DNA replication and repair protein recF
 gi|182630497|gb|ACB91445.1| recombination protein F [Streptococcus pneumoniae CGSP14]
          Length = 365

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTQTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L S   +   + +    +LS++             L
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQPSVNI-TDKQNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I + +A
Sbjct: 352 IFTIQDGKA 360


>gi|285815731|gb|ADC36218.1| DNA recombination and repair protein RecF [Staphylococcus aureus
           04-02981]
          Length = 370

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 162/376 (43%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEVLSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D         +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNHQAL 373
           +   AK  RI+  + +
Sbjct: 354 IMNNAKLYRINQGEII 369


>gi|282902635|ref|ZP_06310528.1| RecF protein [Staphylococcus aureus subsp. aureus C160]
 gi|282918072|ref|ZP_06325822.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus D139]
 gi|282921294|ref|ZP_06329012.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus C427]
 gi|283767794|ref|ZP_06340709.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus H19]
 gi|282315709|gb|EFB46093.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus C427]
 gi|282318357|gb|EFB48717.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus D139]
 gi|282597094|gb|EFC02053.1| RecF protein [Staphylococcus aureus subsp. aureus C160]
 gi|283461673|gb|EFC08757.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus H19]
          Length = 370

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 162/376 (43%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  E+    L D  + +     +L GPHR D+  D         +GS G+Q+   + 
Sbjct: 236 NEAARLEDIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNHQAL 373
           +   AK  RI+  + +
Sbjct: 354 IMNNAKLYRINQGEII 369


>gi|242372599|ref|ZP_04818173.1| recombination protein F [Staphylococcus epidermidis M23864:W1]
 gi|242349654|gb|EES41255.1| recombination protein F [Staphylococcus epidermidis M23864:W1]
          Length = 371

 Score =  348 bits (894), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 92/377 (24%), Positives = 163/377 (43%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEEVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNSD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD---GKFD 237
           +    +  Q A+  +K+ + R   I  L  L             KL+L          ++
Sbjct: 176 TMLEVLNQQFAQYALKVTLRREHFIKELEELAQPIHSGITNEREKLALKYLPSLKLSDYE 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    L +E    L D  K +      L GPHR DL  +       I +GS G+Q+   +
Sbjct: 236 KDESELLDEVMTLLNDNLKREKERGVCLYGPHRDDLGFNVNGMDAQI-YGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   AK  RIS  + L
Sbjct: 354 EIMNNAKLYRISQGELL 370


>gi|57865928|ref|YP_190091.1| recombination protein F [Staphylococcus epidermidis RP62A]
 gi|251811367|ref|ZP_04825840.1| recombination protein F [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874724|ref|ZP_06283603.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           SK135]
 gi|293367577|ref|ZP_06614230.1| recombination protein F [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|73914002|sp|Q5HK02|RECF_STAEQ RecName: Full=DNA replication and repair protein recF
 gi|57636586|gb|AAW53374.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           RP62A]
 gi|251805116|gb|EES57773.1| recombination protein F [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296440|gb|EFA88955.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           SK135]
 gi|291318290|gb|EFE58683.1| recombination protein F [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329724141|gb|EGG60659.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           VCU144]
 gi|329735750|gb|EGG72031.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           VCU028]
 gi|329736171|gb|EGG72444.1| DNA replication and repair protein RecF [Staphylococcus epidermidis
           VCU045]
          Length = 371

 Score =  348 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 92/377 (24%), Positives = 163/377 (43%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFKSD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK---FD 237
           +    +  Q AE  +K+ + R   I  L +L              L+L      K   ++
Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELETLAQPIHAGITNDRETLTLDYVPSLKLSNYE 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +   L EE    L D  + +      L GPHR DL  +         +GS G+Q+   +
Sbjct: 236 ANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFNVNGMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVEGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   AK  RIS  + L
Sbjct: 354 EIMNNAKLYRISQGEIL 370


>gi|224477953|ref|YP_002635559.1| recombination protein F [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|254790488|sp|B9DPX1|RECF_STACT RecName: Full=DNA replication and repair protein recF
 gi|222422560|emb|CAL29374.1| DNA repair and genetic recombination protein [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 370

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 162/376 (43%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNALQLENYRNYEEVVLDCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG        + L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNAE-----YAKIEGELSYRHGKMPLTMFITKKGKKVKVNHLEQHRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQVRRRFIDMELGQISAVYLNDLSQYQRILKQKNNYLKQLQMKQKTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS- 239
           +    +  Q AE  +KI + RV  IN L +L              L L      K  +  
Sbjct: 176 TMLEVLNQQFAEYALKITLKRVHFINELETLAKPIHSSITDERETLDLEYRPSLKLSEET 235

Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               L EE  K L D  + +      L GPHR DL     +      +GS G+Q+   + 
Sbjct: 236 DEAKLYEEVQKLLQDNMEREIERGVALYGPHRDDLGFKVNEMD-AQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   LI+   G  PILLLD++ + LD+ ++  L   + D   Q F+T T     D  
Sbjct: 295 IKLAEIELINIEVGEYPILLLDDVLSELDDSRQTHLLSTIQDK-VQTFVTTTSVEGIDHE 353

Query: 358 LNETAKFMRISNHQAL 373
           + + AK  RI+  + +
Sbjct: 354 IMKHAKLYRINQGEII 369


>gi|15904073|ref|NP_359623.1| recombination protein F [Streptococcus pneumoniae R6]
 gi|116516540|ref|YP_817437.1| recombination protein F [Streptococcus pneumoniae D39]
 gi|225857795|ref|YP_002739306.1| recombination protein F [Streptococcus pneumoniae P1031]
 gi|225862043|ref|YP_002743552.1| recombination protein F [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229429|ref|ZP_06963110.1| recombination protein F [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298255953|ref|ZP_06979539.1| recombination protein F [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501743|ref|YP_003723683.1| recombination protein F [Streptococcus pneumoniae TCH8431/19A]
 gi|51316461|sp|Q8DMX3|RECF_STRR6 RecName: Full=DNA replication and repair protein recF
 gi|122277717|sp|Q04HV1|RECF_STRP2 RecName: Full=DNA replication and repair protein recF
 gi|254790494|sp|C1CNK0|RECF_STRZP RecName: Full=DNA replication and repair protein recF
 gi|254790495|sp|C1CUE4|RECF_STRZT RecName: Full=DNA replication and repair protein recF
 gi|15459739|gb|AAL00834.1| Recombination protein RecF [Streptococcus pneumoniae R6]
 gi|116077116|gb|ABJ54836.1| recF protein [Streptococcus pneumoniae D39]
 gi|225725404|gb|ACO21256.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           P1031]
 gi|225727340|gb|ACO23191.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298237338|gb|ADI68469.1| recombination protein F [Streptococcus pneumoniae TCH8431/19A]
 gi|327388971|gb|EGE87319.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA04375]
          Length = 365

 Score =  348 bits (893), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L S   +   + +    +LS++             L
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I + +A
Sbjct: 352 IFTIQDGKA 360


>gi|325567638|ref|ZP_08144305.1| recombination protein F [Enterococcus casseliflavus ATCC 12755]
 gi|325159071|gb|EGC71217.1| recombination protein F [Enterococcus casseliflavus ATCC 12755]
          Length = 370

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 170/374 (45%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++S +RNY SL L F+    IF+G+N  GKTNILE+I  L+  +  R +S  ++
Sbjct: 1   MRLNELHLSNYRNYDSLTLTFEKGLVIFLGENAQGKTNILESIYVLAMTKSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +       AR+ G       +I LE    +  R  ++N +  + +      L +  
Sbjct: 61  IRWDTEG-----ARISGSVSRGRSTIPLELFLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  IDP +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQVRRKFLDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLNEKKQTDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239
            +   +  Q+   G KI +AR   +  L+    +  QK +     L +    +   +  S
Sbjct: 176 IYLDVLTEQLVAFGSKIILARQRFVQRLAYWANQLHQKISQGKETLQIDYLSNVPGEATS 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +++++ K L   +  +   + TL GPHR DL     +K +    GS G+Q+   + +
Sbjct: 236 LEEIQQQFVKALAQVKDRERFRQVTLAGPHRDDLDFLINEKNV-QTFGSQGQQRTTALSV 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL 358
            LA   L+   TG  P+LLLD++ + LD+ ++  L   +     Q F+T T      D +
Sbjct: 295 KLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGK-VQTFLTTTTLEHVKDKM 353

Query: 359 NETAKFMRISNHQA 372
           +  A+   +     
Sbjct: 354 SVEAEIFYVEQGHI 367


>gi|257866279|ref|ZP_05645932.1| recombination protein F [Enterococcus casseliflavus EC30]
 gi|257873205|ref|ZP_05652858.1| recombination protein F [Enterococcus casseliflavus EC10]
 gi|257800237|gb|EEV29265.1| recombination protein F [Enterococcus casseliflavus EC30]
 gi|257807369|gb|EEV36191.1| recombination protein F [Enterococcus casseliflavus EC10]
          Length = 370

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 170/374 (45%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++S +RNY SL L F+    IF+G+N  GKTNILE+I  L+  +  R +S  ++
Sbjct: 1   MRLNELHLSNYRNYDSLTLTFEKGLVIFLGENAQGKTNILESIYVLAMTKSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +       AR+ G       +I LE    +  R  ++N +  + +      L +  
Sbjct: 61  IRWDTEG-----ARISGSVSRGRSTIPLELFLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  IDP +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQVRRKFLDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLNEKKQTDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS- 239
            +   +  Q+   G KI +AR   +  L+    +  QK +     L +    +   + S 
Sbjct: 176 IYLDVLTEQLVAFGSKIILARQRFVQRLAYWANQLHQKISQGKETLQIDYLSNVPGEAST 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +++++ K L   +  +   + TL GPHR DL     +K +    GS G+Q+   + +
Sbjct: 236 LEEIQQQFVKALAQVKDRERFRQVTLAGPHRDDLDFLINEKNV-QTFGSQGQQRTTALSV 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL 358
            LA   L+   TG  P+LLLD++ + LD+ ++  L   +     Q F+T T      D +
Sbjct: 295 KLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGK-VQTFLTTTTLEHVKDKM 353

Query: 359 NETAKFMRISNHQA 372
           +  A+   +     
Sbjct: 354 SVEAEIFYVEQGHI 367


>gi|15902031|ref|NP_346635.1| recombination protein F [Streptococcus pneumoniae TIGR4]
 gi|111658642|ref|ZP_01409292.1| hypothetical protein SpneT_02000232 [Streptococcus pneumoniae
           TIGR4]
 gi|148984530|ref|ZP_01817818.1| recombination protein F [Streptococcus pneumoniae SP3-BS71]
 gi|148988871|ref|ZP_01820286.1| recombination protein F [Streptococcus pneumoniae SP6-BS73]
 gi|149003094|ref|ZP_01828003.1| recombination protein F [Streptococcus pneumoniae SP14-BS69]
 gi|149007732|ref|ZP_01831341.1| recombination protein F [Streptococcus pneumoniae SP18-BS74]
 gi|149020146|ref|ZP_01835120.1| recombination protein F [Streptococcus pneumoniae SP23-BS72]
 gi|168491759|ref|ZP_02715902.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC0288-04]
 gi|168494012|ref|ZP_02718155.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC3059-06]
 gi|169832646|ref|YP_001695579.1| recombination protein F [Streptococcus pneumoniae Hungary19A-6]
 gi|237651040|ref|ZP_04525292.1| recombination protein F [Streptococcus pneumoniae CCRI 1974]
 gi|237821153|ref|ZP_04596998.1| recombination protein F [Streptococcus pneumoniae CCRI 1974M2]
 gi|307128490|ref|YP_003880521.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           670-6B]
 gi|20978636|sp|Q97N44|RECF_STRPN RecName: Full=DNA replication and repair protein recF
 gi|226737842|sp|B1IAD9|RECF_STRPI RecName: Full=DNA replication and repair protein recF
 gi|14973738|gb|AAK76275.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           TIGR4]
 gi|147758835|gb|EDK65831.1| recombination protein F [Streptococcus pneumoniae SP14-BS69]
 gi|147760727|gb|EDK67699.1| recombination protein F [Streptococcus pneumoniae SP18-BS74]
 gi|147923307|gb|EDK74421.1| recombination protein F [Streptococcus pneumoniae SP3-BS71]
 gi|147925682|gb|EDK76758.1| recombination protein F [Streptococcus pneumoniae SP6-BS73]
 gi|147930824|gb|EDK81805.1| recombination protein F [Streptococcus pneumoniae SP23-BS72]
 gi|168995148|gb|ACA35760.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183573999|gb|EDT94527.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC0288-04]
 gi|183575893|gb|EDT96421.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC3059-06]
 gi|301795136|emb|CBW37609.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           INV104]
 gi|301800959|emb|CBW33621.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           OXC141]
 gi|306485552|gb|ADM92421.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           670-6B]
 gi|332077793|gb|EGI88252.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA41301]
 gi|332199049|gb|EGJ13130.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA47901]
          Length = 365

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L S   +   + +    +LS++             L
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I + +A
Sbjct: 352 IFTIQDGKA 360


>gi|322375204|ref|ZP_08049718.1| DNA replication and repair protein RecF [Streptococcus sp. C300]
 gi|321280704|gb|EFX57743.1| DNA replication and repair protein RecF [Streptococcus sp. C300]
          Length = 365

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 163/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +         + G+      SI LE       R  ++N +    + +   H+ +  
Sbjct: 61  IHFDNEQL-----HLSGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ E G ++   R++ I  L     +   + +    +LS++      F  +   L
Sbjct: 176 SVLDDQLIEYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEELSISYQSSVNF-TNEEQL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 TSSFKIALDKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I N + 
Sbjct: 352 IFNIQNGKI 360


>gi|87161857|ref|YP_492726.1| recombination protein F [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|97180982|sp|Q2FKQ2|RECF_STAA3 RecName: Full=DNA replication and repair protein recF
 gi|87127831|gb|ABD22345.1| DNA replication and repair protein recF [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
          Length = 370

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 161/376 (42%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L SL              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D         +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNHQAL 373
           +    K  RI+  + +
Sbjct: 354 IMNNPKLYRINQGEII 369


>gi|291482373|dbj|BAI83448.1| recombination protein F [Bacillus subtilis subsp. natto BEST195]
          Length = 370

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 160/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +S +RNY    L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++
Sbjct: 1   MYIQNLELSSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG     + +I ++    +  +  ++N +  + + +    L    
Sbjct: 61  IRWDKD-----YAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFLD  +  + P +   +  +++++  RN  L         D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238
           +    +  Q+ E+  K+ + R++    L           +    +L+L     LD     
Sbjct: 176 TMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPL 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + + Y +     R+ +     TL GPHR D++     + +   +GS G+Q+   + 
Sbjct: 236 DLSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T     D  
Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNH 370
               A   R+ N 
Sbjct: 354 TLRQAGMFRVQNG 366


>gi|225869472|ref|YP_002745420.1| DNA replication and repair protein RecF [Streptococcus equi subsp.
           zooepidemicus]
 gi|259563673|sp|C0MGR5|RECF_STRS7 RecName: Full=DNA replication and repair protein recF
 gi|225702748|emb|CAX00903.1| DNA replication and repair protein RecF [Streptococcus equi subsp.
           zooepidemicus]
          Length = 369

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 158/369 (42%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK LN++ +RNY      F     +F+GDN  GKTN LEAI FLS  R  R  S  D+
Sbjct: 1   MWIKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G        ++LE       R  +IN +    + +    + +  
Sbjct: 61  IYFDERDC-----SISGTLERLSGRVQLEILLSDKGRITKINTLKQAKLSDYIGAMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      DS + 
Sbjct: 116 FAPEDLQLVKGSPSLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDSDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+   G ++   R+  + +L+    ++ Q  +    KLS++      F+     +
Sbjct: 176 SVLDEQLVTYGSRVMAHRLAFVQSLAKEASKHHQAISNGLEKLSISYQASVSFEH-QQEI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D + + T +GPHR DL+    D        S G+ + +++ + +A 
Sbjct: 235 YQQFMDQLKATHQRDFLRKNTGVGPHRDDLVFYINDMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L +   
Sbjct: 293 VSLMKQLTGDNPILLLDDVMSELDNIRQTKLLEAVKKENVQTFITTTSLEHLSQLPKDIS 352

Query: 364 FMRISNHQA 372
             +++    
Sbjct: 353 LFKVNKGTI 361


>gi|221232925|ref|YP_002512079.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           ATCC 700669]
 gi|225855720|ref|YP_002737232.1| recombination protein F [Streptococcus pneumoniae JJA]
 gi|225859998|ref|YP_002741508.1| recombination protein F [Streptococcus pneumoniae 70585]
 gi|254790490|sp|C1CBK4|RECF_STRP7 RecName: Full=DNA replication and repair protein recF
 gi|254790491|sp|B8ZQB8|RECF_STRPJ RecName: Full=DNA replication and repair protein recF
 gi|254790493|sp|C1CHM6|RECF_STRZJ RecName: Full=DNA replication and repair protein recF
 gi|220675387|emb|CAR69989.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           ATCC 700669]
 gi|225719969|gb|ACO15823.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           70585]
 gi|225724158|gb|ACO20011.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           JJA]
          Length = 365

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 166/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L  +   D ++ 
Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSDQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L S   +   + +    +LS++             L
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I + +A
Sbjct: 352 IFTIQDGKA 360


>gi|194398177|ref|YP_002038823.1| recombination protein F [Streptococcus pneumoniae G54]
 gi|226737841|sp|B5E455|RECF_STRP4 RecName: Full=DNA replication and repair protein recF
 gi|194357844|gb|ACF56292.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           G54]
          Length = 365

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 166/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L  +   D ++ 
Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSDQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L S   +   + +    +LS++             L
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I + +A
Sbjct: 352 IFTIQDGKA 360


>gi|27466921|ref|NP_763558.1| recombination protein F [Staphylococcus epidermidis ATCC 12228]
 gi|38258564|sp|Q8CQK5|RECF_STAES RecName: Full=DNA replication and repair protein recF
 gi|27314463|gb|AAO03600.1|AE016744_3 DNA repair and genetic recombination protein [Staphylococcus
           epidermidis ATCC 12228]
          Length = 371

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 91/377 (24%), Positives = 162/377 (42%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFKSD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK---FD 237
           +    +  Q  E  +K+ + R   I  L +L              L+L      K   ++
Sbjct: 176 TMLEVLNQQFVEYALKVTLRREHFIKELETLAQPIHAGITNDQETLTLDYVPSLKLSNYE 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +   L EE    L D  + +      L GPHR DL  +         +GS G+Q+   +
Sbjct: 236 ANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFNVNGMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVEGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   AK  RIS  + L
Sbjct: 354 EIMNNAKLYRISQGEIL 370


>gi|154684522|ref|YP_001419683.1| recombination protein F [Bacillus amyloliquefaciens FZB42]
 gi|166220699|sp|A7Z0C6|RECF_BACA2 RecName: Full=DNA replication and repair protein recF
 gi|154350373|gb|ABS72452.1| RecF [Bacillus amyloliquefaciens FZB42]
          Length = 370

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 157/376 (41%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L ++ +RNY    L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++
Sbjct: 1   MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG     +  I ++    +  +  ++N +  + + +    L    
Sbjct: 61  IRWDED-----YAKIEGRVMKRNGDIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFLD  +  +   +   +  +++++  RN  L         D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQRNHFLKQLQSRKQTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238
           +    +  Q+ E   K+   R++    L           +    +L+L     LD    +
Sbjct: 176 TMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPK 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +   Y +     ++ +     TL GPHR D++     + +   +GS G+Q+   + 
Sbjct: 236 DLSKIGNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T     D  
Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHD 353

Query: 358 LNETAKFMRISNHQAL 373
               A   R+ N   +
Sbjct: 354 TLHQAGMFRVENGTLV 369


>gi|311032259|ref|ZP_07710349.1| recombination protein F [Bacillus sp. m3-13]
          Length = 373

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 163/374 (43%), Gaps = 16/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +  +RNY SL  VF+    + +G+N  GKTN++E+I  L+  +  R ++  D+
Sbjct: 1   MYIEELTLRHYRNYESLHAVFEDGVNVILGENAQGKTNVMESIYVLAMAKSHRTSNDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         + ++EG     +  + L+    +  +  +IN +    + +   ++ I  
Sbjct: 61  IRWDEE-----YGKIEGRIHKRNGELPLQLVISKKGKKAKINHIEQTKLSQYIGNMNIVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D  +  + PR+   +  ++++++ RN  L         D 
Sbjct: 116 FAPEDLTLVKGSPQVRRRFIDMELGQVSPRYMHDLSRYQKVLQQRNHYLKQLQTRKQKDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +    +  Q+ EL   +   R E +  L S      +  +    +L++       +    
Sbjct: 176 TMLFVLTEQLIELAASVTEKRQEFVQLLQSWAQPIHKSISRGLEELTIIYKPSIDYVSET 235

Query: 241 CALK---EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
             L    E Y +K    +  +     TL GPHR DL+     K +    GS G+Q+   +
Sbjct: 236 TNLSKMIEAYNEKFDKIKDREIERGVTLFGPHRDDLLFQVNGKDV-QTFGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA   LI +  G  PILLLD++ + LD+ +++ L   +     Q F+T T     D 
Sbjct: 295 SLKLAEIDLIHSVVGEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIDH 353

Query: 357 -SLNETAKFMRISN 369
            +L + A +  +S 
Sbjct: 354 QTLKQAATYEVVSG 367


>gi|77407728|ref|ZP_00784483.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           COH1]
 gi|77173727|gb|EAO76841.1| DNA replication and repair protein RecF [Streptococcus agalactiae
           COH1]
          Length = 369

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 161/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK +++  +RNY   ++ F     IF+G N  GKTN LEAI FL+  R  R  S  ++
Sbjct: 1   MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        ++ G        + L+ +     R  ++N +    + +    + +  
Sbjct: 61  VHFKHHD-----VQITGEVIRKSGHLNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+FLD  +  I   +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFLDIDIGQIKSTYLAELSNYNHVLKQRNTYLKTTNNVDKTFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A+ G ++   R + I AL+    ++    +     LS+      +F     ++
Sbjct: 176 TVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEF-TDKSSI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +  +L      D   + T IGPHR D+     D  I    GS G+Q+ +++ + LA 
Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFGSQGQQRSLILSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   T   PILLLD++ + LD  ++  L   + +   Q F+T T      +L +  K
Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351

Query: 364 FMRISNHQA 372
              +S+   
Sbjct: 352 IFNVSDGTI 360


>gi|319399911|gb|EFV88157.1| DNA replication and repair protein recF [Staphylococcus epidermidis
           FRI909]
          Length = 371

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 92/377 (24%), Positives = 163/377 (43%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNSD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK---FD 237
           +    +  Q AE  +K+ + R   I  L +L              L+L      K   ++
Sbjct: 176 TMLEVLNQQFAEYALKVTLRREHFIKELETLAQPIHAGITNHRETLTLDYVPSLKLSNYE 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +   L EE    L D  + +      L GPHR DL  +         +GS G+Q+   +
Sbjct: 236 ANQSELIEEVLALLNDNLQREKERGVCLYGPHRDDLSFNVNGMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVEGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   AK  RIS  + L
Sbjct: 354 EIMNNAKLYRISQGELL 370


>gi|331267332|ref|YP_004326962.1| recombination protein F [Streptococcus oralis Uo5]
 gi|326684004|emb|CBZ01622.1| recombination protein F [Streptococcus oralis Uo5]
          Length = 365

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 164/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +        R+ G+      SI LE       R  ++N +    + +   H+ +  
Sbjct: 61  IHFDNEQL-----RLSGLLQKKTSSIPLEIDLTPKGRVTKVNYLKQARLSDYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ E G ++   R++ I  L     +   + +    +LS++      F      L
Sbjct: 176 SVLDDQLVEYGCRVIRHRIKFIKDLEKFGQKKHLEISNKLEELSISYQSSVNF-TDEEQL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              +   L   R  D   + T +GPHR D+       AI  + GS G+ + +++ + LA 
Sbjct: 235 TSSFKMALEKSRSRDLFKKNTGVGPHRDDITFYIN--AIDASFGSQGQHRSLVLSVKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I N + 
Sbjct: 352 IFNIQNGKI 360


>gi|308171895|ref|YP_003918600.1| DNA repair and genetic recombination factor [Bacillus
           amyloliquefaciens DSM 7]
 gi|307604759|emb|CBI41130.1| DNA repair and genetic recombination factor [Bacillus
           amyloliquefaciens DSM 7]
 gi|328551704|gb|AEB22196.1| recombination protein F [Bacillus amyloliquefaciens TA208]
 gi|328909963|gb|AEB61559.1| DNA repair and genetic recombination factor [Bacillus
           amyloliquefaciens LL3]
          Length = 370

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 156/373 (41%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L ++ +RNY    L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++
Sbjct: 1   MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG     +  I ++    +  +  ++N +  + + +    L    
Sbjct: 61  IRWDED-----YAKIEGRVMKRNGDIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFLD  +  +   +   +  +++++  RN  L         D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQRNHFLKQLQSRKQTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238
           +    +  Q+ E   K+   R++    L           +    +L+L     LD    +
Sbjct: 176 TMLDVLTDQLIEAAAKVVAKRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPK 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +   Y +     ++ +     TL GPHR D++     + +   +GS G+Q+   + 
Sbjct: 236 DLSKIGNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T     D  
Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNH 370
               A   R+ N 
Sbjct: 354 TLHQAGMFRVENG 366


>gi|303254888|ref|ZP_07340973.1| recombination protein F [Streptococcus pneumoniae BS455]
 gi|303259715|ref|ZP_07345691.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           SP-BS293]
 gi|303262182|ref|ZP_07348127.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264617|ref|ZP_07350536.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           BS397]
 gi|303266074|ref|ZP_07351968.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           BS457]
 gi|303268482|ref|ZP_07354276.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           BS458]
 gi|301802888|emb|CBW35669.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           INV200]
 gi|302598159|gb|EFL65220.1| recombination protein F [Streptococcus pneumoniae BS455]
 gi|302636822|gb|EFL67312.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639267|gb|EFL69726.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           SP-BS293]
 gi|302641983|gb|EFL72336.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           BS458]
 gi|302644378|gb|EFL74631.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           BS457]
 gi|302645987|gb|EFL76215.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           BS397]
          Length = 365

 Score =  347 bits (891), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTQTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L S   +   + +    +LS++             L
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I + +A
Sbjct: 352 IFTIQDGKA 360


>gi|82749781|ref|YP_415522.1| recombination protein F [Staphylococcus aureus RF122]
 gi|97180987|sp|Q2YUN8|RECF_STAAB RecName: Full=DNA replication and repair protein recF
 gi|82655312|emb|CAI79692.1| DNA replication and repair protein [Staphylococcus aureus RF122]
          Length = 370

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 93/376 (24%), Positives = 161/376 (42%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L       I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
           +    +  Q AE  +K+   R   I  L  L              LSL      KFD  Q
Sbjct: 176 TMLEVLNQQFAEYAMKVTDKRAHFIQELELLAKPIHAGITNDKEALSLNYLPSLKFDYAQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  A  EE    L D  + +     +L GPHR D+  D         +GS G+Q+   + 
Sbjct: 236 NEAARLEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMD-AQTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNHQAL 373
           +   AK  RI+  + +
Sbjct: 354 IMNNAKLYRINQGEII 369


>gi|239825588|ref|YP_002948212.1| recombination protein F [Geobacillus sp. WCH70]
 gi|259563662|sp|C5D330|RECF_GEOSW RecName: Full=DNA replication and repair protein recF
 gi|239805881|gb|ACS22946.1| DNA replication and repair protein RecF [Geobacillus sp. WCH70]
          Length = 374

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 161/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  +RNY S  + F     I +G+N  GKTN++EAI  L+  +  R  +  D+
Sbjct: 1   MFLTHLSLKNYRNYESETIEFANNVNIILGENAQGKTNMMEAIYVLAMAKSHRTTNDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG     + ++ LE    +  +  + N +  + + +   HL I  
Sbjct: 61  IRWDED-----YAKIEGKAMKKNGALSLELIISKKGKKAKCNHIEQQRLSQYVGHLNIVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D  +  + P +   +  +++L++ RN  L         D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMLQTREQQDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +    +  Q+  L  KI + R E +  L         + +     +++     +D     
Sbjct: 176 TVLDILTEQLIPLAAKITLKRYEFLLLLQKWAAPIHHEISRGLETLQIQYRPSVDVSEKI 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + E Y++K    ++ +     TL GPHR D+      K + I  GS G+Q+   + 
Sbjct: 236 ELSRIIEAYSEKFATIKEREIQRGMTLAGPHRDDIAFSVNGKDVQI-FGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   LI +  G  PILLLD++ + LD+ ++  L   +     Q F+T T     +  
Sbjct: 295 IKLAEIELIFSEIGDYPILLLDDVLSELDDFRQTHLLDTIRKK-VQTFVTTTSIEGIEHD 353

Query: 358 LNETAKFMRISNHQA 372
           + + A   ++ +   
Sbjct: 354 IIKEAAIYKVHSGHI 368


>gi|319945993|ref|ZP_08020242.1| recombination protein F [Streptococcus australis ATCC 700641]
 gi|319747801|gb|EFW00046.1| recombination protein F [Streptococcus australis ATCC 700641]
          Length = 362

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 96/369 (26%), Positives = 165/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I +FRNY  + L F +   IF+G N  GKTN+LE+I FL+  R  R  S  D+
Sbjct: 1   MWLKSIHIQKFRNYKDVDLQFHSGLNIFLGQNAQGKTNLLESIYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F      V G+      SI LE       R  +IN +    +     ++ +  
Sbjct: 61  IHFQEEQF-----TVSGILEKKTGSIPLEISLSSKGRVTKINHLKQSKLSTYIGNMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
             P   ++  G    RR+F+D  +  + P +   +  +  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLVKGSPALRRKFIDIDLGQMKPVYLSDLTAYHHVLKQRNSYLKTATTVDPTFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             ++ Q+A+ G ++ I R + +  L     E   + +    KL++       F Q    L
Sbjct: 176 DVLDEQLADYGSRVCIHRKDFLKKLEYFGQEKHFEISNQAEKLTIRYDSSIPF-QDEETL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++ +   L + R  D + + T +GPHR D+     D       GS G+ + V++ I LA 
Sbjct: 235 RQTFIILLRENRTKDLIKKTTSVGPHRDDITFYINDMN--ATFGSQGQHRSVVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI + T   PILLLD++ + LD +++  L  +++    Q F+T T       L E  K
Sbjct: 293 ISLIESLTKEKPILLLDDVMSELDNNRQLHLLEVISR-DIQTFITTTTLDHLKDLPEDLK 351

Query: 364 FMRISNHQA 372
              I + Q 
Sbjct: 352 IFNIHSGQV 360


>gi|257875896|ref|ZP_05655549.1| recombination protein F [Enterococcus casseliflavus EC20]
 gi|257810062|gb|EEV38882.1| recombination protein F [Enterococcus casseliflavus EC20]
          Length = 370

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 93/374 (24%), Positives = 170/374 (45%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++S +RNY SL L F+    IF+G+N  GKTNILE+I  L+  +  R +S  ++
Sbjct: 1   MRLNELHLSNYRNYDSLTLTFEKGLVIFLGENAQGKTNILESIYVLAMTKSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +       AR+ G       +I LE    +  R  ++N +  + +      L +  
Sbjct: 61  IRWDTEG-----ARISGSVSRGRSTIPLELFLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  IDP +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQVRRKFLDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLNEKKQTDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS- 239
            +   +  Q+   G KI +AR   +  L+    +  QK +     L +    +   + S 
Sbjct: 176 IYLDVLTEQLVAFGSKIILARQRFVQRLAYWANQLHQKISQGKETLQIDYLSNVPGEAST 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +++++ K L   +  +   + TL GPHR DL     +K +    GS G+Q+   + +
Sbjct: 236 LEEIQQQFVKALALVKDRERFRQVTLAGPHRDDLDFLINEKNV-QTFGSQGQQRTTALSV 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL 358
            LA   L+   TG  P+LLLD++ + LD+ ++  L   +     Q F+T T      D +
Sbjct: 295 KLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGK-VQTFLTTTTLEHVKDKM 353

Query: 359 NETAKFMRISNHQA 372
           +  A+   +     
Sbjct: 354 SVEAEIFYVEQGHI 367


>gi|148993621|ref|ZP_01823092.1| recombination protein F [Streptococcus pneumoniae SP9-BS68]
 gi|168489301|ref|ZP_02713500.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           SP195]
 gi|147927842|gb|EDK78864.1| recombination protein F [Streptococcus pneumoniae SP9-BS68]
 gi|183572210|gb|EDT92738.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           SP195]
 gi|332071670|gb|EGI82163.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA17570]
          Length = 365

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L S   +   + +    +LS++             L
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I + +A
Sbjct: 352 IFTIQDGKA 360


>gi|288554609|ref|YP_003426544.1| recombination protein F [Bacillus pseudofirmus OF4]
 gi|288545769|gb|ADC49652.1| recombination protein F [Bacillus pseudofirmus OF4]
          Length = 371

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 161/374 (43%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L I +FRNY  + L FD +  +F+G+N  GKTN +EAI  L+  +  R +   ++
Sbjct: 1   MFIKSLLIRQFRNYERVELEFDERMNVFIGENAQGKTNTIEAIYVLALAKSHRTSKDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         FA+V+G        I+L+       + +++N +  R + E    + +  
Sbjct: 61  IRWNDE-----FAKVQGQVQRQSGPIELDLVISTKGKKVKLNGLEQRKLSEYVGAVNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    +  G    RRRF+D  +  I P +   +  ++++++ RN LL +   G     
Sbjct: 116 FAPEDLNLVKGSPQLRRRFIDMELGQISPVYLHHLGLYQKVLQQRNFLLKDLQIGKGSKD 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL--DGKFDQS 239
               +  Q+ EL V+I   R   +  L     E  +  +     L +      D   +  
Sbjct: 176 MLDILTDQLIELAVQITKRRFVFLGQLQKWAEEIHRDISRAKETLKIIYKPSCDVLEEMD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +KE + +   + ++ +     TL GPHR DL     +  +   +GS G+Q+   + +
Sbjct: 236 MPKMKEVFIETYENKKQREIARGVTLFGPHRDDLGFLVNEHDV-QTYGSQGQQRTTALSV 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSL 358
            LA   LI    G  PILLLD++ + LD+ ++  L   +     Q F+T T    V    
Sbjct: 295 KLAEIELIHAEVGEYPILLLDDVLSELDDYRQTHLLHTIGQ-RVQTFVTTTSITGVHHEA 353

Query: 359 NETAKFMRISNHQA 372
            + A   ++     
Sbjct: 354 LDGASIFKVEQGTI 367


>gi|21911391|ref|NP_665659.1| recombination protein F [Streptococcus pyogenes MGAS315]
 gi|28896763|ref|NP_803113.1| recombination protein F [Streptococcus pyogenes SSI-1]
 gi|25453245|sp|Q8K5G2|RECF_STRP3 RecName: Full=DNA replication and repair protein recF
 gi|21905607|gb|AAM80462.1| RecF protein [Streptococcus pyogenes MGAS315]
 gi|28812017|dbj|BAC64946.1| RecF protein [Streptococcus pyogenes SSI-1]
          Length = 368

 Score =  346 bits (889), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 163/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L   F +   +F+G+N  GKTN LEAI FLS  R  R  +  ++
Sbjct: 1   MWIKELELKHYRNYDQLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSQRTRADKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S  S   +++ + G  D+ I L  +     R  +IN +    + +    + +  
Sbjct: 61  IHFDH-STVSLTGKIQRISGTVDLEINLSDKG----RVTKINALKQAKLSDYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQRNSYLKSAQQIDAAFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A  G ++   R++ INAL      + Q  +     LSL+      FD+    +
Sbjct: 176 AVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDK-KTNI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D   + T +GPHR DL              S G+ + +++ + +A 
Sbjct: 235 YQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L E  +
Sbjct: 293 VSLMKALTGDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEGIR 352

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 353 IFHVTKGTV 361


>gi|229542312|ref|ZP_04431372.1| DNA replication and repair protein RecF [Bacillus coagulans 36D1]
 gi|229326732|gb|EEN92407.1| DNA replication and repair protein RecF [Bacillus coagulans 36D1]
          Length = 370

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 162/376 (43%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RNY +L + F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MYLQELELHNYRNYETLTIPFENKVNVILGENAQGKTNLMEAIYVLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A+++G       S+ LE    +  +  + N +  + +     ++ +  
Sbjct: 61  IRWDAE-----YAKIKGRLHKTHGSVPLELTISKKGKKAKYNHIEQKKLSRYIGNMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D  +  I P +   M  F+++++ RN  L +       D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFIDMEIGQISPVYLYDMSRFQKILQQRNHYLKQLQMKKQTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +    +  Q+ E   KI + R E +  L           +     +++     ++   + 
Sbjct: 176 TMLDILTEQLIEQAAKIVMRRFEFVRMLEEWARPIHHSISRGLEQLEIQYKPSVNVSEEL 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            +  + + Y  K  + R+ +     T+ GPHR DL      + +    GS G+Q+   + 
Sbjct: 236 DWSKMIKSYENKFAEIREREIDRGVTMAGPHRDDLAFVVNGRDV-HTFGSQGQQRTAALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357
           + LA   LI +     PILLLD++ + LD+ +++ L   +     Q F+T T     D  
Sbjct: 295 VKLAEIELIYSEIREYPILLLDDVLSELDDYRQSHLLNAIQG-RVQTFVTTTSVDGVDHQ 353

Query: 358 LNETAKFMRISNHQAL 373
               A    +   Q +
Sbjct: 354 TLREASMYTVKAGQIV 369


>gi|329117358|ref|ZP_08246075.1| DNA replication and repair protein RecF [Streptococcus parauberis
           NCFD 2020]
 gi|326907763|gb|EGE54677.1| DNA replication and repair protein RecF [Streptococcus parauberis
           NCFD 2020]
          Length = 364

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 161/369 (43%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L ++ FRNY  L + F     IF+G+N  GKTNILEAI F++  R  R  S  ++
Sbjct: 1   MWLKELTLNHFRNYNDLNINFSEGLNIFIGNNAQGKTNILEAIYFIALTRSHRTRSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +         +EG       +I LE       R  +IN +    + E    + +  
Sbjct: 61  IQFSTDRL-----SIEGKLNRLSGNISLEINLSDKGRITKINSLKQAKLSEYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D  + 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHILKQRNAYLKAARTIDFDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             ++ Q++  G ++   R++ I  L      + Q  +     L +         QS   +
Sbjct: 176 VVLDQQLSYYGSRVIQQRIQFIADLEKEADAHHQAISNELESLQIKYISSIDTSQS-QLI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E++ ++L   R+ D   + T IGPHR D+     +        S G+ + +++ I +A 
Sbjct: 235 QEKFMEQLERNRQRDIFRKNTSIGPHRDDIEFYINNMN--ANFASQGQHRSLILSIKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L +T K
Sbjct: 293 VSLMKILTGDNPILLLDDVMSELDNTRQTKLIETVIQENVQTFITTTSLEHLSQLPKTLK 352

Query: 364 FMRISNHQA 372
              +++   
Sbjct: 353 TFHVTSGTI 361


>gi|148997971|ref|ZP_01825484.1| recombination protein F [Streptococcus pneumoniae SP11-BS70]
 gi|168576099|ref|ZP_02722004.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           MLV-016]
 gi|307068837|ref|YP_003877803.1| recombinational DNA repair ATPase [Streptococcus pneumoniae AP200]
 gi|147755981|gb|EDK63024.1| recombination protein F [Streptococcus pneumoniae SP11-BS70]
 gi|183578126|gb|EDT98654.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           MLV-016]
 gi|306410374|gb|ADM85801.1| Recombinational DNA repair ATPase (RecF pathway) [Streptococcus
           pneumoniae AP200]
 gi|332198641|gb|EGJ12724.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA41317]
          Length = 365

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 166/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L  +   D ++ 
Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSDQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L S   +   + +    +LS++             L
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   +  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSKSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I + +A
Sbjct: 352 IFTIQDGKA 360


>gi|222153952|ref|YP_002563129.1| recombination protein F [Streptococcus uberis 0140J]
 gi|254790492|sp|B9DWE6|RECF_STRU0 RecName: Full=DNA replication and repair protein recF
 gi|222114765|emb|CAR43930.1| DNA replication and repair protein RecF [Streptococcus uberis
           0140J]
          Length = 364

 Score =  346 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 87/367 (23%), Positives = 161/367 (43%), Gaps = 9/367 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  FRNY ++   F     +F+G+N  GKTN LEAI FL+  R  R  +  ++
Sbjct: 1   MWIKELQLRNFRNYGTVDTEFSPGLNVFIGNNAQGKTNFLEAIYFLALTRSHRTRTDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    +      ++ G       ++ LE +     R  +IN +    + +    + +  
Sbjct: 61  IQFSKNNL-----QLIGKLNRISGALSLELQLSDKGRITKINALKQARLSDYIGTMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      +S + 
Sbjct: 116 FAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLSDLSNYNYVLKQRNTYLKTISTINSDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+A+ G K+   R++ I  L+    ++ +  +     L +T        Q    +
Sbjct: 176 SVLDEQLADYGSKVIKHRIDFIGELTREANKHHEAISNGLESLIITYESSVT-QQDHQTI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE +   L   R+ D   + T IGPHR D+     D        S G+ + +++ + +A 
Sbjct: 235 KEAFLLNLQKNRQRDIFKKNTSIGPHRDDIHFFINDMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V +   Q F+T T       L +  K
Sbjct: 293 VSLMKEMTGDNPILLLDDVMSELDNTRQIKLLETVINENVQTFITTTSLDHLLHLPDKIK 352

Query: 364 FMRISNH 370
              ++  
Sbjct: 353 TFHVNQG 359


>gi|195979034|ref|YP_002124278.1| recombination protein F [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|226737837|sp|B4U113|RECF_STREM RecName: Full=DNA replication and repair protein recF
 gi|195975739|gb|ACG63265.1| DNA replication and repair protein RecF [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 369

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 157/369 (42%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK LN++ +RNY      F     +F+GDN  GKTN LEAI FLS  R  R  S  D+
Sbjct: 1   MWIKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G        ++LE       R  +IN +    + +    + +  
Sbjct: 61  IYFDERDC-----SISGTLERLSGRVQLEILLSDKGRITKINTLKQAKLSDYIGAMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      DS + 
Sbjct: 116 FAPEDLQLVKGSPSLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDSDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+   G ++   R+  + +L+    ++ Q  +    KLS++      F+     +
Sbjct: 176 SVLDEQLVTYGSRVMAHRLAFVQSLAKEANKHHQAISNGLEKLSISYQASVSFEH-QQEI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D + + T +GPHR DLI             S G+ + +++ + +A 
Sbjct: 235 YQQFMDQLKTTHQRDFLRKNTGVGPHRDDLIFYINGMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L +   
Sbjct: 293 VSLMKQLTGDNPILLLDDVMSELDNIRQTKLLEAVKKENVQTFITTTSLKHLSQLPKDIS 352

Query: 364 FMRISNHQA 372
             +++    
Sbjct: 353 LFKVNKGTI 361


>gi|327438159|dbj|BAK14524.1| recombinational DNA repair ATPase [Solibacillus silvestris StLB046]
          Length = 372

 Score =  346 bits (888), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 166/376 (44%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L ++ +RNY SL L F  +  +F+G+N  GKTN++E+I  L+  +  R A+  ++
Sbjct: 1   MNIERLQLTNYRNYESLTLDFSDKINVFIGENAQGKTNVMESIYVLAMAKSHRTANDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      + ++EG+       + +E    +  +  +IN +    +      + +  
Sbjct: 61  IRWDAD-----YGKIEGVVNKRYGGVPIELTISKKGKKGKINHLEQTKLSNYIGQMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P    I  G    RRRF+D  +  I P +   ++ F+++++ RN LL +     S   
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKILKQRNHLLKKNMGKQSLAS 175

Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                    Q  +  ++I   R + I  L           +    KL +        D S
Sbjct: 176 DVMFEIYTEQYVQAAIQIIRKRFQFIELLQDWAEPIHFGISRGLEKLVIKYRPVTGMDAS 235

Query: 240 F--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    + +   KKL + ++ +     TLIGPHR DL     D  + + +GS G+Q+   +
Sbjct: 236 WTAEEMADYLTKKLEEVKQREIERGVTLIGPHRDDLQFFVNDYDVQV-YGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356
            + LA   LI   T   PILLLD++ + LD+ +++ L   +     Q F+T T  + +  
Sbjct: 295 SLKLAEIELIKQETKETPILLLDDVLSELDDYRQSHLLNTIQG-EVQTFVTTTSVEGIHH 353

Query: 357 SLNETAKFMRISNHQA 372
              + AK  R++    
Sbjct: 354 DTIQHAKLFRVTQGTI 369


>gi|149012798|ref|ZP_01833743.1| recombination protein F [Streptococcus pneumoniae SP19-BS75]
 gi|147763229|gb|EDK70168.1| recombination protein F [Streptococcus pneumoniae SP19-BS75]
          Length = 365

 Score =  346 bits (888), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 165/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L S   +   + +    +LS++             L
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-TDKQNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   +  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 SESFKIALEKSKSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I + +A
Sbjct: 352 IFTIQDGKA 360


>gi|322388468|ref|ZP_08062071.1| recombination protein F [Streptococcus infantis ATCC 700779]
 gi|321140781|gb|EFX36283.1| recombination protein F [Streptococcus infantis ATCC 700779]
          Length = 363

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 89/368 (24%), Positives = 163/368 (44%), Gaps = 10/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L+I +FRNY  + + F+ +  +FVG N  GKTN+LE+I FL+  R  R  +  ++
Sbjct: 1   MWLKNLSIKQFRNYRDVEVNFNPKLNVFVGRNAQGKTNLLESIYFLALTRSHRTKTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +           +V G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IQFEEEQL-----QVSGILQKKTASIPLEIDLTQKGRITKVNYLKQARLSDYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLVKGAPAIRRKFIDIELGQIKPIYLSDLSSYNHVLKQRNTYLKSTQNIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ E G ++   R + I  +     +     +     LS+       F      L
Sbjct: 176 SVLDDQLVEYGCRVMNHRADFIQKMELFGKKKHFDISDQLENLSIRYQPFVNF-VDKKHL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E +   L   R  D   + T +GPHR D+I       +  + GS G+ + +++ I LA 
Sbjct: 235 AESFHIALQKSRPRDLFKKNTGVGPHRDDMIFMING--MEASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L +   
Sbjct: 293 IELMESITKESPILLLDDVMSELDNTRQLKLLETISH-NIQTFITTTSLDHLQNLPDNLS 351

Query: 364 FMRISNHQ 371
              + N Q
Sbjct: 352 VFTVDNGQ 359


>gi|319746166|gb|EFV98437.1| recombination protein F [Streptococcus agalactiae ATCC 13813]
          Length = 355

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 160/364 (43%), Gaps = 10/364 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK +++  +RNY   ++ F     IF+G N  GKTN LEAI FL+  R  R  S  ++
Sbjct: 1   MWIKNISLKHYRNYEEAQVDFSPNLNIFIGRNAQGKTNFLEAIYFLALTRSHRTRSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        ++ G        + L+ +     R  ++N +    + +    + +  
Sbjct: 61  VHFKHHD-----VQITGEVIRKSGHLNLDIQLSEKGRITKVNHLKQAKLSDYIGAMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+FLD  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLVKGAPSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+A+ G ++   R + I AL+    ++    +     LS+      +F     ++
Sbjct: 176 TVLDEQLADYGSRVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEF-TDKSSI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E +  +L      D   + T IGPHR D+     D  I    GS G+Q+ +++ + LA 
Sbjct: 235 REHFLNQLSKSHSRDIFKKNTSIGPHRDDITFFIND--INATFGSQGQQRSLILSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI   T   PILLLD++ + LD  ++  L   + +   Q F+T T      +L +  K
Sbjct: 293 IELIKTVTNDYPILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLK 351

Query: 364 FMRI 367
              +
Sbjct: 352 IFNV 355


>gi|295402120|ref|ZP_06812079.1| DNA replication and repair protein RecF [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109155|ref|YP_003987471.1| DNA replication and repair protein RecF [Geobacillus sp. Y4.1MC1]
 gi|294975803|gb|EFG51422.1| DNA replication and repair protein RecF [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311214256|gb|ADP72860.1| DNA replication and repair protein RecF [Geobacillus sp. Y4.1MC1]
          Length = 374

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 162/375 (43%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  +RNY S  + F     I +G+N  GKTN++EAI  L+  +  R A+  D+
Sbjct: 1   MFLTHLSLKNYRNYKSETIQFANNVNIILGENAQGKTNMMEAIYVLAMAKSHRTANDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG       ++ LE    +  +  + N V  + + +   HL I  
Sbjct: 61  IRWDED-----YAKIEGRATTKSGALSLELIISKKGKKAKCNHVEQQRLSQYVGHLNIVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D  +  + P +   +  +++L++ RN  L         D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFVDMEIGQVSPVYIHDLSQYQKLLQQRNHYLKMLQTREQQDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +    +  Q+  L  KI + R E +  L        ++ +     +++     +D     
Sbjct: 176 TVLDILTEQLIPLAAKITLKRHEFLLLLEKWAAPIHREISRGLETLQIQYRPSVDVSERM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + E Y++K    ++ +     TL GPHR D++     K +    GS G+Q+   + 
Sbjct: 236 ELSRIIEAYSEKFATIKEREIQRGMTLAGPHRDDILFSVNGKDV-QTFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   LI +  G  PILLLD++ + LD+ ++  L   +     Q F+T T     +  
Sbjct: 295 IKLAEIELIFSEIGDYPILLLDDVLSELDDFRQTHLLDAIRQK-VQTFVTTTSIDGIEHD 353

Query: 358 LNETAKFMRISNHQA 372
           + + A   ++ +   
Sbjct: 354 IIKEAAIYKVHSGHV 368


>gi|225871475|ref|YP_002747422.1| DNA replication and repair protein RecF [Streptococcus equi subsp.
           equi 4047]
 gi|254790489|sp|C0MBG1|RECF_STRE4 RecName: Full=DNA replication and repair protein recF
 gi|225700879|emb|CAW95638.1| DNA replication and repair protein RecF [Streptococcus equi subsp.
           equi 4047]
          Length = 369

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 158/369 (42%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK LN++ +RNY      F     +F+GDN  GKTN LEAI FLS  R  R  S  D+
Sbjct: 1   MWIKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G        ++LE       R  +IN +    + +    + +  
Sbjct: 61  IYFDERDC-----SISGTLERLSGRVQLEILLSDKGRITKINTLKQAKLSDYIGAMMVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D+ + 
Sbjct: 116 FAPEDLQLVKGSPNLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDNDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+   G ++   R+  + +L+    ++ Q  +    KLS++      F+     +
Sbjct: 176 SVLDEQLVTYGSRVMAHRLAFVQSLAKEANKHHQAISNGLEKLSISYQASVSFEH-QQEI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +++  +L    + D + + T +GPHR DL+    D        S G+ + +++ + +A 
Sbjct: 235 YQQFMNQLKTTHQRDFLRKNTGVGPHRDDLVFYINDMN--ANFASQGQHRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   TG  PILLLD++ + LD  ++  L   V     Q F+T T       L +   
Sbjct: 293 VSLMKQLTGDNPILLLDDVMSELDNTRQTKLLGAVKKENVQTFITTTSLEHLSQLPKDIS 352

Query: 364 FMRISNHQA 372
             +++    
Sbjct: 353 LFKVNKGTI 361


>gi|23097459|ref|NP_690925.1| recombination protein F [Oceanobacillus iheyensis HTE831]
 gi|51316469|sp|Q8EU85|RECF_OCEIH RecName: Full=DNA replication and repair protein recF
 gi|22775682|dbj|BAC11960.1| DNA repair and genetic recombination [Oceanobacillus iheyensis
           HTE831]
          Length = 369

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 165/373 (44%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L ++ +RNY  L + FD Q  + +G+N  GKTN++EAI  LS  R  R     ++
Sbjct: 1   MHIEKLELTNYRNYDQLEIAFDDQINVIIGENAQGKTNLMEAIYVLSFARSHRTPREKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +         +A++EG     + SI L+       +  ++N +    + +    + +  
Sbjct: 61  IQWDKD-----YAKIEGRITKRNQSIPLQISITSKGKKAKVNHLEQHRLSDYIGSVNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I P +   +  ++++++ RN LL +       D+
Sbjct: 116 FAPEDLTIVKGAPQIRRRFMDMELGQIQPTYIYHLAQYQKVLKQRNHLLKQLQRKPNSDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
           +    +  Q+ E    +   R   +  L        +  +     +++  +  ++   D 
Sbjct: 176 TMLEVLTDQLIEHASILLERRFIYLELLRKWAQPIHRGISRELEQLEIQYSPSIEVSEDA 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   +   Y  K  + ++ +     TL GPHR DLI     K +   +GS G+Q+   + 
Sbjct: 236 NKEKIGNIYQMKFAEVKQKEIERGTTLAGPHRDDLIFFVNGKDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357
           I LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F++ T  + +   
Sbjct: 295 IKLAEIELIYQEVGEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVSTTSVEGIHHE 353

Query: 358 LNETAKFMRISNH 370
             + A+  R+++ 
Sbjct: 354 TLQQAELFRVTDG 366


>gi|304405886|ref|ZP_07387544.1| DNA replication and repair protein RecF [Paenibacillus
           curdlanolyticus YK9]
 gi|304345129|gb|EFM10965.1| DNA replication and repair protein RecF [Paenibacillus
           curdlanolyticus YK9]
          Length = 367

 Score =  345 bits (885), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 156/374 (41%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  +RNYA L L  +++  +F+G N  GKTN+LE+I  L+  +  R A   ++
Sbjct: 1   MFLKRIALRNYRNYAELELDTNSKVNLFIGPNAQGKTNLLESIFALALTKSHRTAKDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A + G       ++KL+       +  +IN +  R + +    L +  
Sbjct: 61  IGWNGTD-----AHIHGEADKQYGTVKLDLMLSAQGKKAKINGLEQRRLSDFVGSLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    I  G    RRRFLD  +  + P +   +  + +++  RN  L      G    
Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVQPGYLHTLQQYSKVLVQRNNYLKTLWSSGGDKQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                  AQ+A+ GVKI   R   I+ L     +          +L+++     +F+   
Sbjct: 176 GLLEVWNAQLADFGVKIIKKRKYFIHKLQQWAEQIHAGITAGSEQLTVSYKPSFEFEDE- 234

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L E +  KL   ++ +     TL+GPHR DL+     K      GS G+Q+   + + 
Sbjct: 235 SVLFEHFMLKLTQVKEQEIRRGTTLVGPHRDDLMFFINGKE-AQTFGSQGQQRTTALSLK 293

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359
           LA   LI    G  P+LLLD++ + LD +++  L         Q F+T T     D    
Sbjct: 294 LAEIELIREEIGEYPLLLLDDVLSELDRNRQTQLIETFQSK-VQTFITATGLESVDVGKL 352

Query: 360 ETAKFMRISNHQAL 373
           + A    +   + +
Sbjct: 353 QDAGIYHVQEGRVM 366


>gi|317126745|ref|YP_004093027.1| DNA replication and repair protein RecF [Bacillus cellulosilyticus
           DSM 2522]
 gi|315471693|gb|ADU28296.1| DNA replication and repair protein RecF [Bacillus cellulosilyticus
           DSM 2522]
          Length = 373

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 156/376 (41%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + I ++RNY  L L F+ +  + +G+N  GKTN++E+I  L+  +  R     ++
Sbjct: 1   MYIKQITIRDYRNYDHLTLPFNNKINVIIGENAQGKTNLMESIYVLAMAKSHRTTKDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P     FA+VEG     +  +++E       + ++IN +  + + E      I  
Sbjct: 61  IRWDQP-----FAKVEGQINNKNGPLQMEVIFSTKGKKVKINHLEKKRLSEYIGSCNIVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEGYFD 179
             P    +  G    RRRFLD  +  I P +   +  + + ++ RN+ L      +   D
Sbjct: 116 FAPEDLSLVKGSPQIRRRFLDMEMGQIHPVYLYYLSQYHKQLKQRNQWLKDVLQKKQKPD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFD 237
           ++    +  Q+      +   R + I  L           +     ++++    ++   D
Sbjct: 176 ATMLDVMTDQLIISAGHVIEKRYDFIKKLQKWAAPIHHDISRGLESLEINYVPSINVSED 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                L     ++    +  +     TLIGPHR DL      + I    GS G+Q+   +
Sbjct: 236 MDLSTLLTVLKEEFDRLKDNELRRGITLIGPHRDDLQFLVNGRDI-QTFGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T     + 
Sbjct: 295 SVKLAELELIHEKVGEYPILLLDDVLSELDDHRQSHLLNTIQGK-VQTFVTTTSVDGIEH 353

Query: 357 SLNETAKFMRISNHQA 372
           +    A    +   + 
Sbjct: 354 ATLRNADMFYVQEGKI 369


>gi|314935204|ref|ZP_07842557.1| DNA replication and repair protein RecF [Staphylococcus hominis
           subsp. hominis C80]
 gi|313656539|gb|EFS20278.1| DNA replication and repair protein RecF [Staphylococcus hominis
           subsp. hominis C80]
          Length = 371

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 165/377 (43%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY ++ L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYVLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNSE-----YAKIEGELSYRHGTMPLTMYITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKTDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +    +  Q A+  + + + R + I  L +L              LSLT     K   + 
Sbjct: 176 TMLEVLNQQFAQYALNVTLRREQFIEELEALAQPIHAGITNQRETLSLTYLPSIKLSDTS 235

Query: 241 ---CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                L +E    L + ++ +      L GPHR DL  +  D      +GS G+Q+   +
Sbjct: 236 KNKSELLDEVITLLNEYQQREMDRAVCLYGPHRDDLGFNVNDMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   AK  RI+  + +
Sbjct: 354 EIMNNAKLYRINQGEII 370


>gi|222150257|ref|YP_002559410.1| recombination protein F [Macrococcus caseolyticus JCSC5402]
 gi|254790482|sp|B9E903|RECF_MACCJ RecName: Full=DNA replication and repair protein recF
 gi|222119379|dbj|BAH16714.1| recombination protein F [Macrococcus caseolyticus JCSC5402]
          Length = 369

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 167/373 (44%), Gaps = 12/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L ++ +RNY +  L F  +  IF+G N  GKTN+LEAI  L+  +  R ++  ++
Sbjct: 1   MKLKTLTLTHYRNYETAELNFSDEVNIFIGINAQGKTNLLEAIYCLAMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       F+ +EGM      ++ L     +  +  ++N +  + + E   H+ +  
Sbjct: 61  IGWGHE-----FSHIEGMLSYKHGTMPLSLSISKKGKKAKVNYLEQKRLTEYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    +  G    RRRF+D  +  I   +   + +++RL++ +N LL +       D 
Sbjct: 116 FAPEDLNLVKGSPQIRRRFIDMEIGQISAVYLNDLSNYQRLLKQKNHLLKQMKLSNSNDM 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +    I  Q A+  VK+ + R   I  L +L +           +LSL       ++ + 
Sbjct: 176 TMLEVINEQFAQYAVKLTLRRKMFIEQLETLAIPIHTGITKDKERLSLRYNASLNYELAE 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             + EE  + L      +    ++L GPHR DL     D  +   +GS G+Q+   + I 
Sbjct: 236 QEMFEETIRILNANMGKEIERTQSLYGPHRDDLSFKINDIDV-QTYGSQGQQRTTALSIK 294

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359
           LA   LI+   G  PILLLD++ + LD+D++  L   +     Q F+T T     +    
Sbjct: 295 LAEIELINQEIGEYPILLLDDVLSELDDDRQTHLLTTIQHK-VQTFVTTTSVEGIEHETI 353

Query: 360 ETAKFMRISNHQA 372
             AK   +S  Q 
Sbjct: 354 NKAKLFNVSEGQI 366


>gi|315612172|ref|ZP_07887087.1| recombination protein F [Streptococcus sanguinis ATCC 49296]
 gi|315315733|gb|EFU63770.1| recombination protein F [Streptococcus sanguinis ATCC 49296]
          Length = 365

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 162/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY   ++ F+ +  +F+G N  GKTNILEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLTIKTFRNYKEAKIDFNPKLNVFLGQNAQGKTNILEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +         + G+      SI LE       R  ++N +    + +   H+ +  
Sbjct: 61  IHFDNEQL-----HLTGLLQKKTSSIPLEIDLTPKGRVTKVNHLKQARLSDYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSVRRKFIDIELGQIKPIYLSDLSNYNHILKQRNTYLKSSQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+ + G ++   R++ I  L     +   + +    KLS++      F  +   L
Sbjct: 176 SVLDDQLIDYGCRVIKHRIKFIKDLEKFGQKKHLEISNKLEKLSISYQSSVNF-TNEEQL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ I LA 
Sbjct: 235 TSSFKIALDKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLSIKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E   
Sbjct: 293 IELMESITNESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLS 351

Query: 364 FMRISNHQA 372
              I   + 
Sbjct: 352 IFNIQKGKI 360


>gi|297582342|ref|YP_003698122.1| DNA replication and repair protein RecF [Bacillus selenitireducens
           MLS10]
 gi|297140799|gb|ADH97556.1| DNA replication and repair protein RecF [Bacillus selenitireducens
           MLS10]
          Length = 373

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 168/374 (44%), Gaps = 15/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L ++++RNY  L L F+ +  +F+G+N  GKTN++EAI  L+  R  R A   ++
Sbjct: 1   MHINELKLTDYRNYTKLHLTFENRVNVFLGENAQGKTNVMEAIYVLAMARSHRTAKDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P     FARVEG     + ++KLE       + +++N +  + + +      I  
Sbjct: 61  IRWDQP-----FARVEGAVTNRNGAMKLEMIFSGRGKKVKLNALERKRLSDYIGACTIVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GYFD 179
             P    +  G    RRRFLD  +  I   +   +  + +L++ RN  L +       FD
Sbjct: 116 FAPEDLALVKGSPQIRRRFLDMEMGQIFTIYLYYLSQYYKLLKQRNTWLKQLQQKSSSFD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238
                 +  Q+ E G ++   R   +N L +         +     L+L      K D  
Sbjct: 176 EGMWHVLTEQLVEAGAEVIQRRFSFLNKLEAWATPIHSAISRDKETLTLHYESTVKADDE 235

Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   +K+ + ++     + +     T+IGPHR D+     D+ +   +GS G+Q+   +
Sbjct: 236 MSVDVIKQVFFEQFQQVMEQEIRRGTTIIGPHRDDVAFFVNDRNV-QTYGSQGQQRTAAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356
            + LA   LI   TG  PILLLD++ + LD+ ++  L   +     Q F+T T  + +  
Sbjct: 295 SVKLAEIELIHEKTGEYPILLLDDVLSELDDHRQTHLLNSIQGK-VQTFVTTTSVEGIHH 353

Query: 357 SLNETAKFMRISNH 370
            + E A    +++ 
Sbjct: 354 EMLEKASTYLVNDG 367


>gi|225626554|ref|ZP_03784593.1| DNA replication and repair protein RecF [Brucella ceti str. Cudo]
 gi|260169593|ref|ZP_05756404.1| recombination protein F [Brucella sp. F5/99]
 gi|261759119|ref|ZP_06002828.1| DNA replication and repair protein recF [Brucella sp. F5/99]
 gi|225618211|gb|EEH15254.1| DNA replication and repair protein RecF [Brucella ceti str. Cudo]
 gi|261739103|gb|EEY27099.1| DNA replication and repair protein recF [Brucella sp. F5/99]
          Length = 384

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 231/371 (62%), Gaps = 2/371 (0%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            DV R  +   F+  A ++ M                  R ++IN +     D+L  + R
Sbjct: 71  DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARTQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|253573851|ref|ZP_04851193.1| DNA replication and repair protein RecF [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846328|gb|EES74334.1| DNA replication and repair protein RecF [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 370

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 157/375 (41%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  +RNY +L L       + +G N  GKTN+LEA+  L+  +  R     ++
Sbjct: 1   MFVNRLSLQNYRNYGTLTLDAFGAVNLIIGRNAQGKTNLLEALFVLALTKSHRTGKDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              GS     + A VE   G     ++LE R     +  ++N +  R + +    + +  
Sbjct: 61  IAFGSDHALVS-AEVEKKYG----PVQLELRLSPQGKKAKLNGLEQRKLSDFIGAMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRFLD  +  + P +   +  +++++  RN LL +    G    
Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVQPSYLYHLQQYQKVLIQRNNLLKQAWGAGPEIK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238
           +       Q+ + GVKI   R + I+ L     +  +        +KL+         ++
Sbjct: 176 TMLEIWNEQLVQHGVKIIKKRKQFISKLQKWAEQIHEGITGGGETLKLAYLPSFGTAEEE 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               L +++  KL   +  +     TL GPHR DL     +      +GS G+Q+   + 
Sbjct: 236 DEAVLLQQFMIKLSQMKDQEIRRGMTLCGPHRDDLSF-IINGNEAQVYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357
           + LA   LI    G  PILLLD++ + LD  ++  L         Q F+T T  +S+  S
Sbjct: 295 LKLAEIELIHEEIGEYPILLLDDVLSELDPYRQTQLIETFQSK-VQTFITATGIESINAS 353

Query: 358 LNETAKFMRISNHQA 372
             + A    +   Q 
Sbjct: 354 RLQDASIFHVQEGQV 368


>gi|228474213|ref|ZP_04058950.1| DNA replication and repair protein RecF [Staphylococcus hominis
           SK119]
 gi|228271908|gb|EEK13245.1| DNA replication and repair protein RecF [Staphylococcus hominis
           SK119]
          Length = 371

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 91/377 (24%), Positives = 165/377 (43%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY ++ L    +  I +G+N  GKTN+LE+I  L+  +  R A+  ++
Sbjct: 1   MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYVLALAKSHRTANDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNSE-----YAKIEGELSYRHGTMPLTMYITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKTDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +    +  Q A+  + + + R + I  L +L              LSLT     K   + 
Sbjct: 176 TMLEVLNQQFAQYALNVTLRREQFIEELEALAQPIHAGITNQRETLSLTYLPSIKLSDTS 235

Query: 241 ---CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                L +E    L + ++ +      L GPHR DL  +  D      +GS G+Q+   +
Sbjct: 236 KNKSELLDEVITLLNEYQQREMDRAVCLYGPHRDDLGFNVNDMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTI-QYKVQTFVTTTSVDGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   AK  RI+  + +
Sbjct: 354 EIMNNAKLYRINQGEII 370


>gi|326692338|ref|ZP_08229343.1| DNA replication and repair protein RecF [Leuconostoc argentinum
           KCTC 3773]
          Length = 375

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 160/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L ++ +RNYA L L F A   +F+G+N  GKTN+LE+I  L+  R  R +S  D+
Sbjct: 1   MELTSLTLTNYRNYADLTLDFSAGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  + S     A + G          L        +  ++N +    + +    L +  
Sbjct: 61  IRWQANS-----ATISGRVKKNVSETPLALHFSTKGKKARVNHLEQSKLSQYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     ++P +      + R+++ RN  L         D 
Sbjct: 116 FAPEDLDLVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKDRNAYLKRLQMKQTTDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQ 238
            + S + AQ+ ++G ++ +AR   +  L         + +     L+L       F  D 
Sbjct: 176 VFLSVLTAQLVDVGAQVFLARRRFLERLQVAAQPIHAEISNQQETLTLAYQTGVAFKRDD 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +K  +   L      + M   TL+GPHR D+     +  + +  GS G+Q+   + 
Sbjct: 236 DLETVKAAFEAALARQEAREIMQGTTLVGPHRDDIKFIVNENDVAV-FGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDS 357
           + LA   L+   TG  P+LLLD++ + LD +++  L   + D   Q F+T  T   V   
Sbjct: 295 VKLAEIDLMQEETGEYPVLLLDDVLSELDANRQTHLLLAIQDK-VQTFITAPTLSDVARQ 353

Query: 358 LNETAKFMRISNHQA 372
           L  T K   + + + 
Sbjct: 354 LIHTPKVFHVQHGEI 368


>gi|294851413|ref|ZP_06792086.1| DNA replication and repair protein recF [Brucella sp. NVSL 07-0026]
 gi|294820002|gb|EFG37001.1| DNA replication and repair protein recF [Brucella sp. NVSL 07-0026]
          Length = 384

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 230/371 (61%), Gaps = 2/371 (0%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            DV R  +   F+  A ++ M                  R + IN +     D+L  + R
Sbjct: 71  DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVCINGIAA-SADDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIVAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|166032887|ref|ZP_02235716.1| hypothetical protein DORFOR_02608 [Dorea formicigenerans ATCC
           27755]
 gi|166027244|gb|EDR46001.1| hypothetical protein DORFOR_02608 [Dorea formicigenerans ATCC
           27755]
          Length = 361

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 97/373 (26%), Positives = 161/373 (43%), Gaps = 19/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK L +  FRNY  L L FD    IF GDN  GKTNILEA+      +  R +   D+
Sbjct: 1   MKIKSLKLKNFRNYELLNLEFDDSTNIFYGDNAQGKTNILEAVYLSGTTKSHRGSKDRDM 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   S         G++   D+ +K         + + IN + IR   EL   + + 
Sbjct: 61  IRFGAEESHIEVIVEKRGIQDQIDMHLK-----KNRPKGVAINKIPIRKAGELFGIVNLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180
           +  P    I       RR+F+D  +  +D  +   + ++ R++  RN LL +  +     
Sbjct: 116 FFSPEDLNIIKNGPAGRRKFIDLELSQLDKVYFNHLSNYSRVVNQRNHLLKDSAYRQDAM 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ + G  I   R + ++ ++ ++    +K      ++ L      K     
Sbjct: 176 ETLDIWDLQLVQYGNAIIARRKQFVDEMNEIVSGIHKKLTGGKEEIRLIYEPSTK----- 230

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                   + L   R+ D   + T +GPHR D+     +  I    GS G+Q+   + + 
Sbjct: 231 ---NMSLEQALEMNRQRDIRMKSTSVGPHRDDVCFMVGNLDIR-RFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L+   TG  P+LLLD++ + LD+ ++N L   + DI + I  TG D+ V     E
Sbjct: 287 LAEIELVKRVTGDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVDEFVNHRF-E 345

Query: 361 TAKFMRISNHQAL 373
             K   + N Q +
Sbjct: 346 VNKVFHVQNGQVI 358


>gi|157690802|ref|YP_001485264.1| recombination protein F [Bacillus pumilus SAFR-032]
 gi|166918720|sp|A8F8Y7|RECF_BACP2 RecName: Full=DNA replication and repair protein recF
 gi|157679560|gb|ABV60704.1| recombination protein F [Bacillus pumilus SAFR-032]
          Length = 370

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 158/376 (42%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L ++ +RNY    L FD +  + +G+N  GKTN++EAI  LS  +  R ++  ++
Sbjct: 1   MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG     +  + ++    +  +  ++N +  + +      L    
Sbjct: 61  IRWDQD-----YAKIEGRVIKKNGPLPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFLD  +  +   +   +  +++++  RN  L         D 
Sbjct: 116 FAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQRNHYLKQLQTRKQTDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238
           +    +  Q+ +   K+   R+     L           +     L+L     ++     
Sbjct: 176 AMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYHTAIEVSEAS 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +K  Y +     R  +     TL GPHR DL+     + +   +GS G+Q+   + 
Sbjct: 236 DLSKIKNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T     D +
Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVEGIDHA 353

Query: 358 LNETAKFMRISNHQAL 373
             + A+  R+++ + +
Sbjct: 354 TLKEAEIFRVASGKVI 369


>gi|322373988|ref|ZP_08048522.1| DNA replication and repair protein RecF [Streptococcus sp. C150]
 gi|321276954|gb|EFX54025.1| DNA replication and repair protein RecF [Streptococcus sp. C150]
          Length = 367

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 165/369 (44%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++I  FRNY+   + F     IF+G N  GKTNILEAI FL+  R  R  S  ++
Sbjct: 1   MWLEKIDIQHFRNYSEAYVTFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    +      ++ G        + LE       R  ++N +    + +   H+ +  
Sbjct: 61  IQFQQSTL-----KLSGTVHRRSGKLPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D  + 
Sbjct: 116 FAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQRNAYLKSTDKVDIDFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S ++ Q+A+ G ++   R++ I  L     ++    +    +L+++   +    Q+  ++
Sbjct: 176 SVLDEQLADFGARVIEHRLDFIKQLEVEADKHHSLLSNQIERLNISYESNISL-QNHKSI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++ +   L    K D   + T +GPHR DL     D     + GS G+Q+ +++ + +A 
Sbjct: 235 RQAFLITLRQNHKRDIFKKNTGVGPHRDDLTFYINDMN--ASFGSQGQQRSLILSLKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             LI N TG  PILLLD++ + LD  ++  L   + D   Q FMT T      +L    K
Sbjct: 293 IALIRNVTGEFPILLLDDVMSELDNHRQLKLLESI-DKEVQTFMTTTSLDHLTNLPPDLK 351

Query: 364 FMRISNHQA 372
              +     
Sbjct: 352 AFVVEAGSI 360


>gi|299820838|ref|ZP_07052727.1| recombination protein F [Listeria grayi DSM 20601]
 gi|299817859|gb|EFI85094.1| recombination protein F [Listeria grayi DSM 20601]
          Length = 369

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 163/373 (43%), Gaps = 12/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY  L + F     +F+G+N  GKTN+LEAI  L+  +  R A+  D 
Sbjct: 1   MHLENMVLRNFRNYPFLEVDFSPAVNVFLGENAQGKTNLLEAILMLALAKSHRTANDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S       A++EG       S+ LE       +  ++N +  + + +   +L +  
Sbjct: 61  INWDSEE-----AKIEGRVFRRGQSVPLELMITPKGKKAKVNHLEQKKLSQYVGNLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180
             P    +  G    RRRFL+  +  + P +   +  ++R+++ RN+ L         D 
Sbjct: 116 FAPEDLSLVKGAPGVRRRFLNMEIAQMQPVYLHELSQYQRVLQQRNQYLKAAQMSKKADP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                +  Q AE+ + I   R E +  L         + +    +L++         ++ 
Sbjct: 176 IMLDILNEQFAEIAITITKRRSEFVKKLIRFAAPLHYQISRELEQLTIRYAASIDLQETD 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            + K    +KL   +K +     TLIGPHR DL     ++ + +  GS G+Q+   + I 
Sbjct: 236 ESTKTSVMEKLQKNKKRELERGVTLIGPHRDDLHFYINEQDVQV-FGSQGQQRTTALSIK 294

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359
           LA   L+    G  P+LLLD++ + LD+ +++ L   +     Q F+T T+ S  D +  
Sbjct: 295 LAEIDLLKEEIGEYPVLLLDDVLSELDDFRQSHLLGAIEGK-VQTFVTTTNISGIDHNTI 353

Query: 360 ETAKFMRISNHQA 372
           + A    ++    
Sbjct: 354 KQATTYTVTQGSV 366


>gi|194016619|ref|ZP_03055233.1| DNA replication and repair protein RecF [Bacillus pumilus ATCC
           7061]
 gi|194012092|gb|EDW21660.1| DNA replication and repair protein RecF [Bacillus pumilus ATCC
           7061]
          Length = 370

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 158/376 (42%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L ++ +RNY    L FD +  + +G+N  GKTN++EAI  LS  +  R ++  ++
Sbjct: 1   MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG     +  + ++    +  +  ++N +  + +      L    
Sbjct: 61  IRWDQD-----YAKIEGRVIKKNGPLPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFLD  +  +   +   +  +++++  RN  L         D 
Sbjct: 116 FAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQRNHYLKQLQTRKQKDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238
           +    +  Q+ +   K+   R+     L           +     L+L     ++     
Sbjct: 176 AMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYHTAIEVSEAS 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +K  Y +     R  +     TL GPHR DL+     + +   +GS G+Q+   + 
Sbjct: 236 DLSKIKNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T     D +
Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVEGIDHA 353

Query: 358 LNETAKFMRISNHQAL 373
             + A+  R+++ + +
Sbjct: 354 TLKEAEIFRVASGKVI 369


>gi|323463205|gb|ADX75358.1| DNA replication and repair protein RecF [Staphylococcus
           pseudintermedius ED99]
          Length = 371

 Score =  343 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 89/376 (23%), Positives = 159/376 (42%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R  +  ++
Sbjct: 1   MKLKTLQLENYRNYEQISLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTTNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG        + L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFNAE-----YAKIEGELNFRHGMMPLTMFITKKGKKVKVNHLEQSRLTQYIGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ RN  L +       D+
Sbjct: 116 FAPEDLSIVKGAPQVRRRFIDMELGQISRLYLNDLSQYQRILKQRNHYLKQLQLKKTQDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--- 237
           +    +  Q  E  VK+   R + I  L  L              L+L      K +   
Sbjct: 176 TMLEVLNHQFVEYAVKVTQRRQQFIKELELLAAPIHSGITNERETLTLQYLPSIKIEDVS 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           QS   L ++  + +    + +     +L GPHR DL            +GS G+Q+   +
Sbjct: 236 QSEDVLIQQVLEDVQHHMEREIERGVSLYGPHRDDLAFQVNGMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNQEVGEYPILLLDDVLSELDDARQTHLLSTIQHK-VQTFVTTTSVDGIDH 353

Query: 357 SLNETAKFMRISNHQA 372
            + + AK  RI+    
Sbjct: 354 EIMKDAKVYRITQGNI 369


>gi|331270703|ref|YP_004397195.1| DNA replication and repair protein RecF [Clostridium botulinum
           BKT015925]
 gi|329127253|gb|AEB77198.1| DNA replication and repair protein RecF [Clostridium botulinum
           BKT015925]
          Length = 360

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 171/370 (46%), Gaps = 13/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  FRNY +L L F+    +FVGDN  GKTNILE+I +   G+  R     ++
Sbjct: 1   MYIKNLQVINFRNYDNLVLEFNKGINVFVGDNAQGKTNILESIYYCGLGKSHRTNKDKEL 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + GS  ++ S +   E ++   DI I  E       + +++N + ++ + +L     + 
Sbjct: 61  IKWGSKDAYVSIYVCKERLDKKIDIKIFKE-----GKKGVKVNSIKLKTISDLIGIFNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   +I     + RR+FLD  +  ++ ++   ++ + +++  RN +L +   D    
Sbjct: 116 MFSPEDLKIVKESPLYRRKFLDIELSKLNKKYYYSLVRYNKVLNERNTILRKWNSDKGVT 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+++ G  I   R++ I +LS        +      K+        K   +F  +
Sbjct: 176 EVYDHQLSKYGSFIIKERLKYIESLSIKGKRIHDEITSHKEKIEFKYITSIK---NFNNI 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +  +   L      D     T  GPHR D I++  +   T   GS G+Q+  ++ I LA 
Sbjct: 233 QSGFFDILRKNLDKDFEKGSTSFGPHRDDFIININNTD-TRTFGSQGQQRTAILTIKLAS 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362
             +I   TG  P+LLLD++ + LD +++  +   +     Q  +TGT   ++ D L++  
Sbjct: 292 LEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIKKF--QTIITGTGILNIKDYLDDHV 349

Query: 363 KFMRISNHQA 372
           K  +++N   
Sbjct: 350 KLFKVTNGTV 359


>gi|326802620|ref|YP_004320438.1| DNA replication and repair protein RecF [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650777|gb|AEA00960.1| DNA replication and repair protein RecF [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 372

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 162/375 (43%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L + +FRNY  + + FD    +F+GDN  GKTN++EAI  LS  R  R A   +V
Sbjct: 1   MHLKSLYLKDFRNYDQVTMDFDPGINVFIGDNAQGKTNLIEAIYMLSLARSHRTAKEREV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+      FAR+EG     +  I L     +  +  ++N +    + +      +  
Sbjct: 61  IRFGAD-----FARIEGRVAKKNGEIPLSLTMTKKGKIAKLNRLQQERLSDYIGAFNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RR F+DR +  ++P +     +++ L++ RN  L         D 
Sbjct: 116 FAPEDLELVKGAPQLRRTFIDRELSQMNPTYLYDSSNYQHLLKQRNTYLKQLQRREAHDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            + + +  Q+ +   ++ + R + I  L +       + +     L+L        D+  
Sbjct: 176 LYLNVLTEQLVDFASRMMVQRFQFIQKLEAYAKPIHAQLSMDKETLTLAYQASLTVDETS 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   LK E   K    ++ +     T IGP R DL +   DK +   +GS G+Q+  ++ 
Sbjct: 236 TVDQLKTELMDKFQSIQEREIEVGSTQIGPQRDDLKLMINDK-VVQQYGSQGQQRTTVLS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA    +  T G  PILLLD++ + LD+ ++  L + +     Q F+T T      + 
Sbjct: 295 LKLAEIECMHETLGEYPILLLDDVLSELDDQRQTHLLKTIEKK-VQTFLTTTSMEGIQAD 353

Query: 359 N-ETAKFMRISNHQA 372
             +      I   Q 
Sbjct: 354 KIDDPDLFTIKAGQV 368


>gi|167461554|ref|ZP_02326643.1| recombination protein F [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 377

 Score =  342 bits (877), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 94/373 (25%), Positives = 160/373 (42%), Gaps = 17/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RNY  + LV D    IFVG N  GKTN+LE+I  L+  +  R     ++
Sbjct: 1   MFLQRLTLHHYRNYQHVELVTDRNVNIFVGPNAQGKTNLLESIYVLALTKSHRTHHDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    S     A ++G       S  L+       +  +IN +  + + +    L +  
Sbjct: 61  IQWEGES-----ALLQGDVEKKYGSYSLDLAISSKGKKAKINGLEQKKLSQFIGALNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P    I  G    RRRFLD  +  + P +   +  +++++  RN +L + +   S   
Sbjct: 116 FAPEDLEIIKGNPGIRRRFLDMEIGQVYPGYLYDLSQYQKVLAQRNNMLKKAFPAPSAEH 175

Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-- 237
                    Q+A+ GVKI   R   I  L +   +          +L++           
Sbjct: 176 AAMLDIWNEQLAQFGVKIMKKRQNFIKKLQNWAEQIHDGITNGGEELTIRYQPSFAVQDF 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    L E++  KL   +  +     +L GPHR DL+    DK +   +GS G+Q+   +
Sbjct: 236 EDETVLMEQFMIKLSQIKDQEIRRGVSLAGPHRDDLLFYINDKEV-QTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVF 355
            + LA   LI +  G  PILLLD++ + LDE ++  L +       Q F+T T  +    
Sbjct: 295 SLKLAEIELIHSEVGEYPILLLDDVLSELDEYRQTQLIQTFQKK-VQTFITTTGLESVHL 353

Query: 356 DSLNETAKFMRIS 368
           D L E A   R++
Sbjct: 354 DQL-EDASVFRVT 365


>gi|18308986|ref|NP_560920.1| recombination protein F [Clostridium perfringens str. 13]
 gi|110801062|ref|YP_694479.1| recombination protein F [Clostridium perfringens ATCC 13124]
 gi|110802319|ref|YP_697355.1| recombination protein F [Clostridium perfringens SM101]
 gi|168207733|ref|ZP_02633738.1| DNA replication and repair protein RecF [Clostridium perfringens E
           str. JGS1987]
 gi|168212007|ref|ZP_02637632.1| DNA replication and repair protein RecF [Clostridium perfringens B
           str. ATCC 3626]
 gi|168215270|ref|ZP_02640895.1| DNA replication and repair protein RecF [Clostridium perfringens
           CPE str. F4969]
 gi|168218303|ref|ZP_02643928.1| DNA replication and repair protein RecF [Clostridium perfringens
           NCTC 8239]
 gi|169343436|ref|ZP_02864436.1| DNA replication and repair protein RecF [Clostridium perfringens C
           str. JGS1495]
 gi|182627052|ref|ZP_02954777.1| DNA replication and repair protein RecF [Clostridium perfringens D
           str. JGS1721]
 gi|20978577|sp|Q8XPF9|RECF_CLOPE RecName: Full=DNA replication and repair protein recF
 gi|122956936|sp|Q0SWY1|RECF_CLOPS RecName: Full=DNA replication and repair protein recF
 gi|123345112|sp|Q0TV61|RECF_CLOP1 RecName: Full=DNA replication and repair protein recF
 gi|18143661|dbj|BAB79710.1| DNA repair and genetic recombination protein [Clostridium
           perfringens str. 13]
 gi|110675709|gb|ABG84696.1| DNA replication and repair protein RecF [Clostridium perfringens
           ATCC 13124]
 gi|110682820|gb|ABG86190.1| DNA replication and repair protein RecF [Clostridium perfringens
           SM101]
 gi|169298388|gb|EDS80477.1| DNA replication and repair protein RecF [Clostridium perfringens C
           str. JGS1495]
 gi|170660924|gb|EDT13607.1| DNA replication and repair protein RecF [Clostridium perfringens E
           str. JGS1987]
 gi|170710063|gb|EDT22245.1| DNA replication and repair protein RecF [Clostridium perfringens B
           str. ATCC 3626]
 gi|170713334|gb|EDT25516.1| DNA replication and repair protein RecF [Clostridium perfringens
           CPE str. F4969]
 gi|177907578|gb|EDT70217.1| DNA replication and repair protein RecF [Clostridium perfringens D
           str. JGS1721]
 gi|182379694|gb|EDT77173.1| DNA replication and repair protein RecF [Clostridium perfringens
           NCTC 8239]
          Length = 361

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 165/371 (44%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY +L +       +F+GDN  GKTN++EAI +    +  R     ++
Sbjct: 1   MYIKSLQLINYRNYENLSIKLCPNVNVFIGDNAQGKTNVIEAIYYCGFAKSHRTNRDKEL 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  +F       + ++ + D++I          + + IN + I  + EL     + 
Sbjct: 61  IEWNKDRAFIRLDVHKDRLDKIIDVNI-----LKDGKKAISINSIKISKIGELIGTFNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   +I       RRRF+D  +  ++ R+   ++ + +++  RN +L     +    
Sbjct: 116 MFSPEDLKIVKESPGIRRRFIDMELSQLNKRYYHNLVQYNKVLHERNLVLKNKNINEEML 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+A+ G  I   R++ I  L+    E  ++      ++        K       +
Sbjct: 176 DIYDIQLAQYGENIIKTRLKYIEQLNKYSKEIHKEITSGKEEIEFKYISTVK---DLDNI 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           K+   K L   RK D   R T IGPHR D  +   +    I +GS G+Q+  ++ I  A 
Sbjct: 233 KDSMIKLLEQNRKKDIDKRATSIGPHRDDFNIYLNNIDAKI-YGSQGQQRTSVLTIKFAS 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            ++I   TG  P+LLLD++ + LD +++  +   + +I + I  TG +  +   L+E +K
Sbjct: 292 LKIIKEITGEYPVLLLDDVLSELDFNRKRYVLTSIKNIQTVITCTGIE-DLTSYLDENSK 350

Query: 364 FMRISNHQALC 374
             R+ N +  C
Sbjct: 351 VFRVINGRIQC 361


>gi|253681218|ref|ZP_04862016.1| DNA replication and repair protein RecF [Clostridium botulinum D
           str. 1873]
 gi|253562456|gb|EES91907.1| DNA replication and repair protein RecF [Clostridium botulinum D
           str. 1873]
          Length = 360

 Score =  341 bits (876), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 87/370 (23%), Positives = 169/370 (45%), Gaps = 13/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  FRNY +L L F     +F+G+N  GKTNILE+I + S G+  R     ++
Sbjct: 1   MYIKNLQLVNFRNYENLVLEFSEGINVFIGNNAQGKTNILESIYYCSIGKSHRTNKDKEL 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + GS  ++ S +     ++   DI +  E       + +++N + ++ + +L     + 
Sbjct: 61  IKWGSKNAYVSIYVCKNRLDKKIDIKVFKE-----GKKGIKVNSIKLKTISDLIGTFNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   +I     + RR+FLD  +  ++ ++   ++ + +++  RN +L     +    
Sbjct: 116 MFSPEDLKIVKESPLYRRKFLDIELSKLNKKYYYSLVRYNKVLNERNAILRRWNSNKDVT 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+++ G  I   R++ I +LS        +       +        K   +F  +
Sbjct: 176 EVYDQQLSKYGSFIIKERLKYIESLSIKGKRIHDEITSQKENIEFKYITCIK---NFNNI 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + E+ + L    + D     T  GPHR D I++  +   T   GS G+Q+  ++ I LA 
Sbjct: 233 ESEFFEILRKNLEKDFEKGSTSFGPHRDDFIININNTD-TRTFGSQGQQRTAILTIKLAS 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362
             +I   TG  P+LLLD++ + LD +++  +   +     Q  +TGT   ++ D L+   
Sbjct: 292 LEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIKKF--QTIITGTGILNIKDYLDNHV 349

Query: 363 KFMRISNHQA 372
           K   ++N   
Sbjct: 350 KLFEVTNGTV 359


>gi|126651998|ref|ZP_01724190.1| recombination protein F [Bacillus sp. B14905]
 gi|126591267|gb|EAZ85376.1| recombination protein F [Bacillus sp. B14905]
          Length = 371

 Score =  341 bits (876), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 157/375 (41%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + ++ +RNY +L L F  +  +F+G+N  GKTN++E+I  L+  +  R  +  ++
Sbjct: 1   MHIEQIKLTNYRNYDALALNFSPKINVFIGENAQGKTNVMESIYVLAMAKSHRTTNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      + ++EG        + +E    +  +  +IN +    +      + +  
Sbjct: 61  IRWDSD-----YGKIEGAVQKRHGILPIELTITKKGKKGKINHIEQSRLSHYIGQMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D  +  I P +   ++ F+++++ RN  L     +   + 
Sbjct: 116 FAPEDLNVVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKVLKQRNHFLKMNQGKSMSND 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
                   Q      +I   R + ++ L           +     L +        + + 
Sbjct: 176 VMYEVYNEQYIHAATQIIRKRFQFMDLLQEWAEPIHAGISQGKETLVIKYRTVAGIEKEH 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   ++    +KL + R+ +     TL+GPHR DL        +   +GS G+Q+   + 
Sbjct: 236 SSSEIENTLHQKLMEAREREFDRGVTLVGPHRDDLQFLVNGYDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357
           + LA   LI   T   PILLLD++ + LD+ +++ L   +     Q F+T T  + +   
Sbjct: 295 LKLAEIELIKQETNETPILLLDDVLSELDDYRQSHLLNTIQG-EVQTFVTTTSVEGIHHE 353

Query: 358 LNETAKFMRISNHQA 372
             E A+   +     
Sbjct: 354 TMEQAQLFHVKQGAI 368


>gi|296110747|ref|YP_003621128.1| recombination protein F [Leuconostoc kimchii IMSNU 11154]
 gi|295832278|gb|ADG40159.1| recombination protein F [Leuconostoc kimchii IMSNU 11154]
          Length = 372

 Score =  341 bits (876), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 156/375 (41%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNYA L+L F     +F+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MELTSLKLVNYRNYADLKLDFSDGVNVFLGENAQGKTNLLESIYVLALTRSHRTSSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R          A + G          L        +  ++N +    + +    L +  
Sbjct: 61  IRWHEKE-----ATISGRVKKNISETPLSLHFSNKGKRARVNHLEQSKLSQYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     ++P +      + R+++ RN  L         D+
Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKERNAYLKRLQMKQTTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
            +   +  Q+ ++G ++ +AR      L +       +      +L+L       F+   
Sbjct: 176 VFLDVLTEQLVDVGAQVILARQAFTERLQAAAQPIHAEIANQLEQLTLIYQTSVDFESGD 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +K  + + L   +  + M   TL+GPHR DL     D  + I  GS G+Q+   + 
Sbjct: 236 ELATVKLAFEQALKKQQAREIMQGSTLVGPHRDDLQFIVNDNDVAI-FGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDS 357
           + LA   L+   TG  PILLLD++ + LD +++  L   + D   Q F+T  T   V   
Sbjct: 295 VKLAEIDLMQQETGEYPILLLDDVLSELDANRQTHLLLAIQDK-VQTFITSPTLSDVARQ 353

Query: 358 LNETAKFMRISNHQA 372
           L  T K   +     
Sbjct: 354 LIHTPKIFHVQQGNI 368


>gi|169825625|ref|YP_001695783.1| hypothetical protein Bsph_0007 [Lysinibacillus sphaericus C3-41]
 gi|226737813|sp|B1HS35|RECF_LYSSC RecName: Full=DNA replication and repair protein recF
 gi|168990113|gb|ACA37653.1| RecF [Lysinibacillus sphaericus C3-41]
          Length = 371

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 157/375 (41%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + ++ +RNY +L L F  +  +F+G+N  GKTN++E+I  L+  +  R  +  ++
Sbjct: 1   MHIEQIKLTNYRNYDALALNFSPKINVFIGENAQGKTNVMESIYVLAMAKSHRTTNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      + ++EG        + +E    +  +  +IN +    +      + +  
Sbjct: 61  IRWDSD-----YGKIEGAVQKRHGILPIELTITKKGKKGKINHIEQSRLSHYIGQMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D  +  I P +   ++ F+++++ RN  L     +   + 
Sbjct: 116 FAPEDLNVVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKVLKQRNHFLKMNQGKSMSND 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
                   Q      +I   R + ++ L           +     L +        + + 
Sbjct: 176 VMYEVYNEQYIHAATQIIRKRFQFMDLLQEWAEPIHAGISQGKETLIIKYRTVAGIEKEH 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   ++    +KL + R+ +     TL+GPHR DL        +   +GS G+Q+   + 
Sbjct: 236 SSSEIENTLHQKLMEAREREFDRGVTLVGPHRDDLQFLVNGYDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357
           + LA   LI   T   PILLLD++ + LD+ +++ L   +     Q F+T T  + +   
Sbjct: 295 LKLAEIELIKQETNETPILLLDDVLSELDDYRQSHLLNTIQG-EVQTFVTTTSVEGIHHE 353

Query: 358 LNETAKFMRISNHQA 372
             E A+   +     
Sbjct: 354 TMEQAQLFHVKQGAI 368


>gi|257871392|ref|ZP_05651045.1| recombination protein F [Enterococcus gallinarum EG2]
 gi|257805556|gb|EEV34378.1| recombination protein F [Enterococcus gallinarum EG2]
          Length = 370

 Score =  341 bits (874), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 169/374 (45%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L ++ +RNY SL L FD    IF+G+N  GKTN+LE+I  L+  +  R  S  ++
Sbjct: 1   MRLNNLQLNNYRNYESLELSFDKNLVIFLGENAQGKTNVLESIYVLAMTKSHRTTSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +       A+V G       +I LE    +  R  ++N +  + +      L +  
Sbjct: 61  IRWDTAG-----AQVSGAVSRGHSTIPLELFLTKKGRKTKVNHIEQKKLSSYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  IDP +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMEIGQIDPIYLYDLVQYQSVLKQRNQYLKQLFEKKQNDE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD-GKFDQS 239
            + + +  Q+ E G KI  AR   +  L+    +  QK +     L +      G    S
Sbjct: 176 LYLTVLTEQLIEFGSKIIFARQRFVKRLAFWANQLHQKISDEKEVLQIEYLSSVGTVSAS 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +++++   L   +  + M + +L+GPHR DL     D+ +    GS G+Q+   + +
Sbjct: 236 LEQVQQQFKDALDQVKTREKMRQISLVGPHRDDLNFLINDRNV-QTFGSQGQQRTTALSV 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL 358
            LA   L+   TG  P+LLLD++ + LD+ ++  L   +     Q F+T T      D +
Sbjct: 295 KLAEIDLMKEETGEYPVLLLDDVMSELDDSRQLHLLETIEGK-VQTFITTTTLEHVKDKM 353

Query: 359 NETAKFMRISNHQA 372
           +  A+   +     
Sbjct: 354 SVEAEIFYVDKGHI 367


>gi|315644303|ref|ZP_07897473.1| DNA replication and repair protein RecF [Paenibacillus vortex V453]
 gi|315280678|gb|EFU43967.1| DNA replication and repair protein RecF [Paenibacillus vortex V453]
          Length = 370

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 93/378 (24%), Positives = 156/378 (41%), Gaps = 16/378 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  +RNY  L+L       + +G N  GKTN++EA+  L+  +  R +   ++
Sbjct: 1   MFVKNVSLQHYRNYEKLQLEAFGDVNLIIGRNAQGKTNLMEALFVLALTKSHRTSKDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F  + A V         ++KLE    +  +  +IN +  R + +    L +  
Sbjct: 61  I-----GFEQSHAHVSAEIDRKYGALKLELSLSQQGKKAKINGLEQRKLSDFIGSLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRFLD  +  + P +   +  +++++  RN LL +    G  + 
Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVAPSYLFHLQQYQKVLVQRNNLLKQLWGKGSAEQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQ 238
           +      +Q+AE GVKI   R + I  L        Q        LSL          ++
Sbjct: 176 AMLDIWNSQLAEHGVKIVKKRKQFIKKLQKWAESIHQGITNGLEDLSLHYLPSFADAEEE 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               L E +  KL   ++ +     TL GPHR DL      K +   +GS G+Q+   + 
Sbjct: 236 DEAVLFETFMIKLSQMKEQEIRRGMTLAGPHRDDLAFYINGKEV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF--D 356
           + LA   LI    G  P+LLLD++ + LD  ++  L         Q F+T T       D
Sbjct: 295 LKLAEIELIQEEIGEYPVLLLDDVLSELDPYRQTQLIETFQSK-VQTFITATGIESLNTD 353

Query: 357 SLNETAKFMRISNHQALC 374
            L   A    + + Q   
Sbjct: 354 KLKG-ASIFHVHDGQVGS 370


>gi|319940193|ref|ZP_08014546.1| DNA replication and repair protein recF [Streptococcus anginosus
           1_2_62CV]
 gi|319810664|gb|EFW06994.1| DNA replication and repair protein recF [Streptococcus anginosus
           1_2_62CV]
          Length = 365

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 92/367 (25%), Positives = 155/367 (42%), Gaps = 10/367 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L I  FRNY +  + F +   IF+G N  GKTNILEAI FL+  R  R  S  D+
Sbjct: 1   MWLKNLQIQHFRNYEATEIDFHSGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F     ++ G       +I LE       R  ++N +    + +   ++ +  
Sbjct: 61  I-----YFSKDTLKISGQLVKQTGNISLEIDLTPKGRITKVNHLKQSKLSDYVGNMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPALRRKFIDIELGQIKPIYLSDLSHYHHVLKQRNTYLKTAKTMDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ E G ++   R+E +  L     +   + +     L++          S   L
Sbjct: 176 AVLDDQLVEFGCRVMQHRIEFLKKLEHFGQQKHLELSSHLENLTIKYCSSVPLSDS-NKL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE +   L   R  D   + T +GPHR D+     D       GS G+ + V++ + LA 
Sbjct: 235 KESFQIALKQSRSRDLFKKNTGVGPHRDDIAFYINDMN--ANFGSQGQHRSVVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   T   PILLLD++ + LD  ++  L   ++    Q FMT T      S+    K
Sbjct: 293 IELMETVTKEKPILLLDDVMSELDNSRQLNLLETISQ-NIQTFMTTTTLEHLQSMPSNIK 351

Query: 364 FMRISNH 370
              I   
Sbjct: 352 IFSIHEG 358


>gi|322381375|ref|ZP_08055378.1| recF-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154951|gb|EFX47222.1| recF-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 383

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 161/375 (42%), Gaps = 17/375 (4%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N + ++ L +  +RNY  + LV D    IFVG N  GKTN+LE+I  L+  +  R     
Sbjct: 5   NALFLQRLTLHHYRNYQHVELVTDRNVNIFVGPNAQGKTNLLESIYVLALTKSHRTHHDK 64

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++ +    S     A ++G       S  L+       +  +IN +  + + +    L +
Sbjct: 65  ELIQWEGES-----ALLQGDVEKKYGSYSLDLAISSKGKKAKINGLEQKKLSQFIGALNV 119

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS- 181
               P    I  G    RRRFLD  +  + P +   +  +++++  RN +L + +   S 
Sbjct: 120 VLFAPEDLEIIKGNPGIRRRFLDMEIGQVYPGYLYDLSQYQKVLAQRNNMLKKAFPAPSA 179

Query: 182 ----WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
                      Q+A+ GVKI   R   I  L +   +          +L++         
Sbjct: 180 EHAAMLDIWNEQLAQFGVKIMKKRQNFIKKLQNWAEQIHDGITNGGEELTIRYQPSFAVQ 239

Query: 238 --QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
             +    L E++  KL   +  +     +L GPHR DL+    DK +   +GS G+Q+  
Sbjct: 240 DFEDETVLMEQFMIKLSQIKDQEIRRGVSLAGPHRDDLLFYINDKEV-QTYGSQGQQRTT 298

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKS 353
            + + LA   LI +  G  PILLLD++ + LDE ++  L +       Q F+T T  +  
Sbjct: 299 ALSLKLAEIELIHSEVGEYPILLLDDVLSELDEYRQTQLIQTFQKK-VQTFITTTGLESV 357

Query: 354 VFDSLNETAKFMRIS 368
             D L E A   R++
Sbjct: 358 HLDQL-EDASVFRVT 371


>gi|295108630|emb|CBL22583.1| DNA replication and repair protein RecF [Ruminococcus obeum A2-162]
          Length = 363

 Score =  339 bits (869), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 158/372 (42%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY +L+L FD    IF GDN  GKTNILE++      +  R +   ++
Sbjct: 1   MYIKSLELKNYRNYQNLQLDFDKGTNIFYGDNAQGKTNILESVYLCGTTKSHRGSKDKEI 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   S      R +      D+ ++         + + IN + I+   EL   + + 
Sbjct: 61  IRFGEEESHIRMMIRKDEFSYKIDMHLR-----KNKAKGVAINGLPIKKARELFGIVNLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRF+D  +  +D  +   +  +  ++  RNRLL + Y + S  
Sbjct: 116 FFSPEDLNIIKNGPGERRRFMDLELCQLDQIYLTDLAGYNHIVNQRNRLLKDLYMNPSLK 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + QM + G KI   R + +  L+ +I +           L +            
Sbjct: 176 ETLDIWDMQMLQYGTKIINKRKDFVRDLNQVIQDIHHNLTGGIEHLEVVY--------EP 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E++   L   R+ D   + T  GPHR DL +      I   +GS G+Q+   + + 
Sbjct: 228 STEAEDFENVLKKNRERDIRMKMTSAGPHRDDLSLVVNGIDIR-KYGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+       PILLLD++ + LD +++  L   + DI + I  TG D  V +  + 
Sbjct: 287 LSEIYLVKEKIKDTPILLLDDVLSELDSNRQTYLLDCIHDIQTLITCTGLDDFVSNQFHI 346

Query: 361 TAKFMRISNHQA 372
             K  R+   + 
Sbjct: 347 N-KVFRVIKGEV 357


>gi|172056049|ref|YP_001812509.1| DNA replication and repair protein RecF [Exiguobacterium sibiricum
           255-15]
 gi|226737799|sp|B1YGB5|RECF_EXIS2 RecName: Full=DNA replication and repair protein recF
 gi|171988570|gb|ACB59492.1| DNA replication and repair protein RecF [Exiguobacterium sibiricum
           255-15]
          Length = 384

 Score =  338 bits (868), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 155/375 (41%), Gaps = 13/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  + +S +RNY SL L F  +  + +G+N  GKTN+LEAI  L+  +  R     ++
Sbjct: 1   MRLDSVRLSHYRNYESLELSFSEKTNVLIGENAQGKTNLLEAIYVLALAKSHRTTHDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  + +     ARVEG       S   E       +  ++N +  R + +    L I  
Sbjct: 61  IQWDAET-----ARVEGRIHKRRGSHSQEIAISSRGKKAKLNHLEQRRLSDYVGALNIVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    I  G    RRRFLD  +  + P +   +  + ++++ RN LL +      D +
Sbjct: 116 FAPEDLHIVKGSPQIRRRFLDMEIGQVSPVYLHELSQYLKVLKQRNALLKQLSMKGGDET 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--S 239
           +   +  QM  L VKI   R   I  L        +  +    +L L    D   +    
Sbjct: 176 FLDVLTEQMITLAVKIVQRRHHFIAQLEKWARPIHEGISRGQEQLVLIYRSDTFSNDLLD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +   Y +K    +  +     TL GPHR D  ++   + +   +GS G+Q+   + +
Sbjct: 236 VEGMTASYMQKFGKMKTNEIRRGVTLFGPHRDDFEMEVNGRNV-QTYGSQGQQRTAALSL 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI    G  P+LLLD++ + LD+ ++  L   +     Q  +T T         
Sbjct: 295 KLAEIELIHEEVGEYPLLLLDDVLSELDDHRQTHLLDTMQQK-VQTILTTTSVDGIAHET 353

Query: 359 NETAKFMRISNHQAL 373
            + AK   +     +
Sbjct: 354 IKQAKLFHVKQGAVI 368


>gi|289551837|ref|YP_003472741.1| DNA recombination and repair protein RecF [Staphylococcus
           lugdunensis HKU09-01]
 gi|289181368|gb|ADC88613.1| DNA recombination and repair protein RecF [Staphylococcus
           lugdunensis HKU09-01]
          Length = 371

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 160/377 (42%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY ++ L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFKAE-----YAKIEGELNYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +  +    D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQYGHKTDV 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
           +    +  Q A+  + + + R   I+ L +L              LSL      K     
Sbjct: 176 TMLEVLNQQFAQYALNVTLRREHFIHDLEALAQPIHAGITNDKEALSLNYLPSIKLSDTS 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           Q    L  E    L D    +      L GPHR DL  +         +GS G+Q+   +
Sbjct: 236 QDESILLSEVITFLNDNLDREIDRGVCLFGPHRDDLGFNVNSMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   A+  RI   + +
Sbjct: 354 DIMNNARLYRIKQGEII 370


>gi|116617178|ref|YP_817549.1| DNA replication and repair protein RecF [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|122272621|sp|Q040E6|RECF_LEUMM RecName: Full=DNA replication and repair protein recF
 gi|116096025|gb|ABJ61176.1| DNA replication and repair protein RecF [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 374

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 160/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  +RNY+ L L F +   +F+G+N  GKTN+LE+I  L+  R  R +S  D+
Sbjct: 1   MELESLKLDHYRNYSDLTLEFSSGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +       A + G    +     L        +  ++N +    +      L +  
Sbjct: 61  VQWQAKE-----ATISGRVKRSISETPLSLHFSNKGKKARVNHLEQSKLSHYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    +  G    RRRF+D     ++P +      ++R+++ RN  L         D+
Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYKRILKERNAYLKRLQLKQTTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
            +   +  Q+ ++G +I IAR E +N L         + +     +KL     +D   D 
Sbjct: 176 VFLDVLSEQLVDVGSQILIARQEFLNKLELAAQPIHAEISDQREALKLRYMSSVDFASDA 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   +K  +A  L   R  + M   T++GPHR +L  D     + I  GS G+Q+   + 
Sbjct: 236 SLEEVKSVFADALSRQRSREIMQGSTMVGPHRDELQFDVNGNNVAI-FGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L+   TG  P+LLLD++ + LD  ++  L   + D   Q F+T    S     
Sbjct: 295 IKLAEIDLMQQETGEYPVLLLDDVLSELDASRQTHLLLAIQDK-VQTFITAPTLSDIARQ 353

Query: 358 LNETAKFMRISNH 370
           L    +   +   
Sbjct: 354 LIRKPRVFHVKQG 366


>gi|314934957|ref|ZP_07842316.1| DNA replication and repair protein RecF [Staphylococcus caprae C87]
 gi|313652887|gb|EFS16650.1| DNA replication and repair protein RecF [Staphylococcus caprae C87]
          Length = 371

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 162/377 (42%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLENYRNYEEVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFKAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSKLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD---GKFD 237
           +    +  Q A+  +K+ + R   I  L  L             KL L          ++
Sbjct: 176 TMLEVLNQQFAQYALKVTLRREHFIKELEELAQPIHSGITNEREKLGLKYLPSLKLSDYE 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    L EE  + L D  + +      L GPHR DL  +         +GS G+Q+   +
Sbjct: 236 KEESELLEEVIELLNDNLQREKERGVCLYGPHRDDLGFNVNGMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   AK  RIS  + L
Sbjct: 354 EIMNNAKLYRISQGELL 370


>gi|315659992|ref|ZP_07912850.1| recombination protein F [Staphylococcus lugdunensis M23590]
 gi|315494893|gb|EFU83230.1| recombination protein F [Staphylococcus lugdunensis M23590]
          Length = 371

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 161/377 (42%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY ++ L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFKAE-----YAKIEGELNYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +  +    D 
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQYGHKTDV 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
           +    +  Q A+  + + + R   I+ L +L              LSL      K     
Sbjct: 176 TMLEVLNQQFAQYALNVTLRREHFIHDLEALAQPIHAGITNDKEVLSLNYLPSIKLSDTS 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           Q    L  E    L D    +      L GPHR DL  +         +GS G+Q+   +
Sbjct: 236 QDESILLSEVITFLNDNLDREIDRGVCLFGPHRDDLGFNVNSMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   A+  RI+  + +
Sbjct: 354 DIMNNARLYRINQGEII 370


>gi|295694691|ref|YP_003587929.1| DNA replication and repair protein RecF [Bacillus tusciae DSM 2912]
 gi|295410293|gb|ADG04785.1| DNA replication and repair protein RecF [Bacillus tusciae DSM 2912]
          Length = 370

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 95/373 (25%), Positives = 160/373 (42%), Gaps = 13/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  FRNY  L+L   A   +F+G+NG GKTN+LEAI  L+  +  R    A+ 
Sbjct: 1   MRLESLRLLHFRNYPHLQLDTRAPVNVFIGENGQGKTNVLEAIDILALTKSHRTHRLAEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G       FA +EG       S +L      S +   +  +  + + +    L +  
Sbjct: 61  IQWGEQ-----FALIEGRVQRNTGSSELSVTLTTSGKRAAVAGIERQRISDYVGMLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P   ++  G    RRRFLD  +  I P + R +  + R +  RN+LL     +     
Sbjct: 116 FTPEDLQLIKGSPQVRRRFLDMEIGQISPLYLRDLQQYVRALSQRNQLLKSANHNPTERI 175

Query: 181 -SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                  + Q+A  G +I + R + +  L     E   + +     LSL+       +Q+
Sbjct: 176 TDTLDIWDDQLARHGSRIILRRAQFVRTLERHAREIHSRVSGDREVLSLSYAK-VSPEQT 234

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              + + Y  +L   R +D     T +GPHR DL++   D+    A  S G+Q+   + +
Sbjct: 235 PEQVFQMYLHELRARRSLDLARGVTSVGPHRDDLVILLNDRE-AAAFASQGQQRTAALSL 293

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   LI    G  P+LLLD++ + LD  ++  L   +     Q F+T T      SL 
Sbjct: 294 KLAEIELIREEVGEYPVLLLDDVLSELDPVRQVHLVSAM-GAQVQTFLTTTHLEGLGSLA 352

Query: 360 ETAKFMRISNHQA 372
              +   +   Q 
Sbjct: 353 GALQVFVVEAGQI 365


>gi|315273169|ref|ZP_07869215.1| DNA replication and repair protein RecF [Listeria marthii FSL
           S4-120]
 gi|313616205|gb|EFR89284.1| DNA replication and repair protein RecF [Listeria marthii FSL
           S4-120]
          Length = 370

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 82/374 (21%), Positives = 159/374 (42%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       S+ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGVRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +        +   
Sbjct: 176 MLLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + +
Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +     Q F+T T  S  D   
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHET 353

Query: 359 NETAKFMRISNHQA 372
            + A    +     
Sbjct: 354 LKQATTFYVEKGTV 367


>gi|299541762|ref|ZP_07052085.1| hypothetical protein BFZC1_22469 [Lysinibacillus fusiformis ZC1]
 gi|298725500|gb|EFI66141.1| hypothetical protein BFZC1_22469 [Lysinibacillus fusiformis ZC1]
          Length = 371

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 157/375 (41%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + ++ +RNY +L L F  +  +F+G+N  GKTN++E+I  L+  +  R  +  ++
Sbjct: 1   MYIEQIKLTNYRNYDALALNFSPKINVFIGENAQGKTNVMESIYVLAMAKSHRTTNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S      + ++EG        + +E    +  +  +IN +    +      + +  
Sbjct: 61  IRWDSD-----YGKIEGAVKKRHGILPIELTITKKGKKGKINHIEQSRLSHYIGQMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D  +  I P +   ++ F+++++ RN  L     +   + 
Sbjct: 116 FAPEDLNVVKGSPQIRRRFIDMEIGQISPVYLHDLLTFQKVLKQRNHFLKMNQGKSMSND 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
                   Q      +I   R + ++ L           +     L +        + + 
Sbjct: 176 VMYEVYNEQYIHAATQIIRKRFQFMDLLQEWAEPIHAGISQGKETLVIKYRTVAGIEKEH 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   ++    +KL + R+ +     TL+GPHR DL        +   +GS G+Q+   + 
Sbjct: 236 STSEIENTLHQKLIEAREREFDRGVTLVGPHRDDLQFLVNGYDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDS 357
           + LA   LI   T   PILLLD++ + LD+ +++ L   +     Q F+T T  + +   
Sbjct: 295 LKLAEIELIKQETKETPILLLDDVLSELDDYRQSHLLNTIQG-EVQTFVTTTSVEGIHHE 353

Query: 358 LNETAKFMRISNHQA 372
             E A+   +     
Sbjct: 354 TMEQAQLFHVKQGAI 368


>gi|331083522|ref|ZP_08332634.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404215|gb|EGG83763.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 361

 Score =  338 bits (867), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 158/375 (42%), Gaps = 21/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  +RNY SL L FD    IF GDN  GKTNILEA    S  +  R +   ++
Sbjct: 1   MYIESIELKNYRNYNSLALEFDKGTNIFYGDNAQGKTNILEAAYLCSTTKSHRGSKDKEM 60

Query: 65  TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +  +       F   +G+    D+ +K         + + I+ + IR   EL   L I 
Sbjct: 61  IKFDADEAHIRMFVNKDGISRKIDMHLK-----KSKPKGIAIDGIPIRKASELFGLLNIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRF+D  +  +D  +   +  +  ++  RN+LL +  F  S  
Sbjct: 116 FFSPEDLNIIKNGPGERRRFMDLELCQLDKLYLSNLSSYNHVLNQRNKLLKDIAFQESLK 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q  + G +I   R   I+ ++ ++ +          K+ L            
Sbjct: 176 DTLEIWDEQFVQYGKEIIETRRRFIDEINGIMEKIHSSITGNREKIELVY--------EP 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E + ++L   R+ D   ++T +GPHR D  V      I   +GS G+Q+   + + 
Sbjct: 228 SVSDENFYQELSKNREKDCRFKQTSVGPHRDDFSVKVNGIDIR-RYGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359
           L+   ++       P+LLLD++ + LD +++N L   ++    Q  +T T    F D   
Sbjct: 287 LSEIYMVKKVIKDMPVLLLDDVLSELDSNRQNYLLNSISH--VQTMITCTGLDDFIDKRF 344

Query: 360 ETAKFMRISNHQALC 374
              K  ++ +    C
Sbjct: 345 HINKIFKVIDGDVFC 359


>gi|254930864|ref|ZP_05264223.1| recombination protein F [Listeria monocytogenes HPB2262]
 gi|293582409|gb|EFF94441.1| recombination protein F [Listeria monocytogenes HPB2262]
 gi|328476148|gb|EGF46854.1| recombination protein F [Listeria monocytogenes 220]
 gi|332310338|gb|EGJ23433.1| DNA replication and repair protein recF [Listeria monocytogenes
           str. Scott A]
          Length = 370

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 159/374 (42%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       S+ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +        +   
Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASITLNGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + I
Sbjct: 236 PEVWKADLLQKIESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +     Q F+T T  S  D   
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHET 353

Query: 359 NETAKFMRISNHQA 372
            + A    +     
Sbjct: 354 LKQATTFYVEKGTV 367


>gi|224498302|ref|ZP_03666651.1| recombination protein F [Listeria monocytogenes Finland 1988]
          Length = 370

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 159/374 (42%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       S+ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRIAKHGQSVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +        +   
Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASITLNGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + I
Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +     Q F+T T  S  D   
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHET 353

Query: 359 NETAKFMRISNHQA 372
            + A    +     
Sbjct: 354 LKQATTFYVEKGTV 367


>gi|254830703|ref|ZP_05235358.1| recombination protein F [Listeria monocytogenes 10403S]
 gi|290892042|ref|ZP_06555039.1| recombination protein F [Listeria monocytogenes FSL J2-071]
 gi|290558636|gb|EFD92153.1| recombination protein F [Listeria monocytogenes FSL J2-071]
          Length = 370

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 159/374 (42%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       S+ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +        +   
Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + I
Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +     Q F+T T  S  D   
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHET 353

Query: 359 NETAKFMRISNHQA 372
            + A    +     
Sbjct: 354 LKQATTFYVEKGTV 367


>gi|296330040|ref|ZP_06872524.1| recombination protein F [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672702|ref|YP_003864373.1| recombination protein F [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296153079|gb|EFG93944.1| recombination protein F [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305410945|gb|ADM36063.1| recombination protein F [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 370

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 161/373 (43%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L ++ +RNY    L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++
Sbjct: 1   MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG     + +I ++    +  +  ++N +  + + +    L    
Sbjct: 61  IRWDKD-----YAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFLD  +  + P +   +  +++++  RN  L         D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238
           +    +  Q+ E+  K+ + R++    L           +    +L+L     L+    +
Sbjct: 176 TMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPK 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + + Y +     R+ +     TL GPHR D++     + +   +GS G+Q+   + 
Sbjct: 236 DLSKIGDSYQEAFSKLREKEIERGITLSGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T     D  
Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNH 370
               A   R+ N 
Sbjct: 354 TLRQAGMFRVQNG 366


>gi|16802053|ref|NP_463538.1| recombination protein F [Listeria monocytogenes EGD-e]
 gi|46906229|ref|YP_012618.1| recombination protein F [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47097287|ref|ZP_00234845.1| DNA replication and repair protein RecF [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224503072|ref|ZP_03671379.1| recombination protein F [Listeria monocytogenes FSL R2-561]
 gi|226222644|ref|YP_002756751.1| RecF protein [Listeria monocytogenes Clip81459]
 gi|254824775|ref|ZP_05229776.1| recombination protein F [Listeria monocytogenes FSL J1-194]
 gi|254827429|ref|ZP_05232116.1| recombination protein F [Listeria monocytogenes FSL N3-165]
 gi|254851837|ref|ZP_05241185.1| recombination protein F [Listeria monocytogenes FSL R2-503]
 gi|254899681|ref|ZP_05259605.1| recombination protein F [Listeria monocytogenes J0161]
 gi|254913116|ref|ZP_05263128.1| DNA replication and repair protein RecF [Listeria monocytogenes
           J2818]
 gi|254937497|ref|ZP_05269194.1| recombination protein F [Listeria monocytogenes F6900]
 gi|255520065|ref|ZP_05387302.1| recombination protein F [Listeria monocytogenes FSL J1-175]
 gi|284803261|ref|YP_003415126.1| recombination protein F [Listeria monocytogenes 08-5578]
 gi|284996402|ref|YP_003418170.1| recombination protein F [Listeria monocytogenes 08-5923]
 gi|300763381|ref|ZP_07073379.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL
           N1-017]
 gi|20978583|sp|Q8YAV8|RECF_LISMO RecName: Full=DNA replication and repair protein recF
 gi|51316269|sp|Q725G6|RECF_LISMF RecName: Full=DNA replication and repair protein recF
 gi|259563663|sp|C1L302|RECF_LISMC RecName: Full=DNA replication and repair protein recF
 gi|16409364|emb|CAC98220.1| RecF protein [Listeria monocytogenes EGD-e]
 gi|46879493|gb|AAT02795.1| DNA replication and repair protein RecF [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47014332|gb|EAL05307.1| DNA replication and repair protein RecF [Listeria monocytogenes
           str. 1/2a F6854]
 gi|225875106|emb|CAS03794.1| RecF protein [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258599807|gb|EEW13132.1| recombination protein F [Listeria monocytogenes FSL N3-165]
 gi|258605129|gb|EEW17737.1| recombination protein F [Listeria monocytogenes FSL R2-503]
 gi|258610099|gb|EEW22707.1| recombination protein F [Listeria monocytogenes F6900]
 gi|284058823|gb|ADB69764.1| recombination protein F [Listeria monocytogenes 08-5578]
 gi|284061869|gb|ADB72808.1| recombination protein F [Listeria monocytogenes 08-5923]
 gi|293591118|gb|EFF99452.1| DNA replication and repair protein RecF [Listeria monocytogenes
           J2818]
 gi|293594014|gb|EFG01775.1| recombination protein F [Listeria monocytogenes FSL J1-194]
 gi|300515658|gb|EFK42707.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL
           N1-017]
          Length = 370

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 159/374 (42%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       S+ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +        +   
Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASITLNGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + I
Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +     Q F+T T  S  D   
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHET 353

Query: 359 NETAKFMRISNHQA 372
            + A    +     
Sbjct: 354 LKQATTFYVEKGTV 367


>gi|217965930|ref|YP_002351608.1| DNA replication and repair protein RecF [Listeria monocytogenes
           HCC23]
 gi|254790481|sp|B8DAQ5|RECF_LISMH RecName: Full=DNA replication and repair protein recF
 gi|217335200|gb|ACK40994.1| DNA replication and repair protein RecF [Listeria monocytogenes
           HCC23]
 gi|307569528|emb|CAR82707.1| DNA replication and repair protein [Listeria monocytogenes L99]
          Length = 370

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 159/374 (42%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       S+ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +        +   
Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + I
Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +     Q F+T T  S  D   
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHGT 353

Query: 359 NETAKFMRISNHQA 372
            + A    +     
Sbjct: 354 LKQATTFYVEKGTV 367


>gi|313625797|gb|EFR95414.1| DNA replication and repair protein RecF [Listeria innocua FSL
           J1-023]
          Length = 370

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 159/374 (42%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       ++ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRVVKRGQTVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGVRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +        +   
Sbjct: 176 MLLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + +
Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +     Q F+T T  S  D + 
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHNT 353

Query: 359 NETAKFMRISNHQA 372
              A    +     
Sbjct: 354 LNQATTFYVEKGTV 367


>gi|300172306|ref|YP_003771471.1| DNA replication and repair protein RecF [Leuconostoc gasicomitatum
           LMG 18811]
 gi|299886684|emb|CBL90652.1| DNA replication and repair protein RecF [Leuconostoc gasicomitatum
           LMG 18811]
          Length = 375

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 159/376 (42%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  +RNY  L L F     +F+G+N  GKTN+LE+I  L+  R  R +S  D+
Sbjct: 1   MELQSLRLVNYRNYTDLTLNFSDGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R          A + G    +     L        +  ++N +    + +    L +  
Sbjct: 61  IRWQEKE-----ATISGRVKKSISDTPLSLHFSNKGKKARVNHLEQSKLSQYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     ++P +      + R+++ RN  L         D+
Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYRRILKERNAYLKRLQMKQTTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
            +   +  Q+ ++G ++ +AR   +  L         + +     L+L     LD + + 
Sbjct: 176 IFLDVLTEQLVDIGSQVLLARQTFLERLEVAAQPIHAEISNKRETLTLRYQTSLDFEKET 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +K  + + L   +  + M   TL+GPHR D+     D  + +  GS G+Q+   + 
Sbjct: 236 DLATIKLVFEQTLKKQQSREIMQGSTLVGPHRDDIQFIVNDNDVAV-FGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDS 357
           I LA   L+   TG  PILLLD++ + LD +++  L   + D   Q F+T  T   V   
Sbjct: 295 IKLAEIDLMQQETGEYPILLLDDVLSELDANRQTHLLLAIQDK-VQTFITAPTLSDVARQ 353

Query: 358 LNETAKFMRISNHQAL 373
           L    +   +   + +
Sbjct: 354 LIHAPRVFHVKQGEIV 369


>gi|308066842|ref|YP_003868447.1| DNA repair protein RecF [Paenibacillus polymyxa E681]
 gi|305856121|gb|ADM67909.1| DNA replication and repair protein RecF [Paenibacillus polymyxa
           E681]
          Length = 371

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 154/376 (40%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + + ++RNY  L L       + +G N  GKTN++EAI  L+  +  R +   ++
Sbjct: 1   MFVNNIVLQQYRNYEQLELNEFGPVNLLIGQNAQGKTNLVEAIFVLALTKSHRTSRDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+ S     A V+   G   + + L T+  ++    +IN +  R + +    L +  
Sbjct: 61  ISFGATSTH-LAADVDKKYGKIRLDLALSTQGKKA----KINGLEQRKLSDFIGSLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P    I  G    RRRFLD  +  + P +   +  +++++  RN LL + +       
Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVAPGYLYHLQQYQKVLVQRNNLLKQAWGKDMASV 175

Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL--DGKFD 237
                    Q+ E GVKI   R + I  L        +       +L LT         +
Sbjct: 176 QLMLEVWNEQLVEHGVKIVKKRKQFITKLQKWAQAIHEGIAGGTEELKLTYVPSFSEPEE 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    L E +  KL   R+ +     TL GPHR DL      + +   +GS G+Q+   +
Sbjct: 236 EDEAVLLERFMIKLSQMREQEIRRGMTLAGPHRDDLAFAINGREV-HTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA   LI    G  P+LLLD++ + LD  ++  L         Q F+T T     ++
Sbjct: 295 SLKLAEIELIHEEIGEYPVLLLDDVLSELDPYRQTQLIETFQSK-VQTFITATGVETLNA 353

Query: 358 LN-ETAKFMRISNHQA 372
              + A    + +   
Sbjct: 354 ERLKDANIYHVHDGHV 369


>gi|116491822|ref|YP_803557.1| recombination protein F [Pediococcus pentosaceus ATCC 25745]
 gi|122266714|sp|Q03I57|RECF_PEDPA RecName: Full=DNA replication and repair protein recF
 gi|116101972|gb|ABJ67115.1| DNA replication and repair protein RecF [Pediococcus pentosaceus
           ATCC 25745]
          Length = 374

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 90/373 (24%), Positives = 158/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRNYA L + F +   + +G+N  GKTN+LE+I FL+  R  R  S  D+
Sbjct: 1   MYLKTLELHNFRNYADLVVEFGSGINVLLGENAQGKTNLLESIYFLALTRSHRTNSDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S+ +  ARV G          LE       +  ++N +    + +    L +  
Sbjct: 61  I-----SWKTKAARVSGSVQKEHTVTPLEINLSSKGKNAKVNHLEQSRLSQYVGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    I  G    RR+F+D     +  ++      +  +++ RN+ + +  F    D 
Sbjct: 116 FAPEDLSIVKGSPAVRRKFIDMEFGQMSSKYLYNSAQYRSVLKQRNQYIKQLQFNPKGDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q+A  G +I   R++ +  L     E  ++ +    KLS         DQ  
Sbjct: 176 VYLDVLSDQLAAHGAEIIFQRIQFLKKLEKWSQEVHKEISQGKEKLSFQYVSPISSDQAD 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   +           R+ +    +TL+GPH  D+     DK ++   GS G+Q+   + 
Sbjct: 236 TTEKIYAALQALFQKQREKELQQGKTLVGPHLDDVRFMVNDKNVS-TFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDS 357
           + LA   L+   TG  P+LLLD++ + LD+ ++  L   + +   Q F+T T  S V   
Sbjct: 295 VKLAEIDLMKEETGEYPVLLLDDVLSELDDSRQTHLLTAIQNK-VQTFITTTSLSGVAQQ 353

Query: 358 LNETAKFMRISNH 370
           L        I + 
Sbjct: 354 LINEPHVFNIDHG 366


>gi|261403880|ref|YP_003240121.1| DNA replication and repair protein RecF [Paenibacillus sp.
           Y412MC10]
 gi|261280343|gb|ACX62314.1| DNA replication and repair protein RecF [Paenibacillus sp.
           Y412MC10]
          Length = 370

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 91/378 (24%), Positives = 156/378 (41%), Gaps = 16/378 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  +RNY  L+L       + +G N  GKTN++EA+  L+  +  R +   ++
Sbjct: 1   MFVKNVSLQHYRNYEKLQLEAFGDVNLIIGRNAQGKTNLMEALFVLALTKSHRTSKDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F  + A +         +++LE    +  +  +IN +  R + +    L +  
Sbjct: 61  I-----GFEQSSAHISAEIDRKYGTLRLELSLSQQGKKAKINGLEQRKLSDFIGSLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRFLD  +  + P +   +  +++++  RN LL +    G  + 
Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVAPSYLFHLQQYQKVLVQRNNLLKQLWGKGSTEQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQ 238
           +      +Q+AE GVKI   R + I  L        Q        LSL          ++
Sbjct: 176 AMLEIWNSQLAEHGVKIVKKRKQFIKKLQKWAESIHQGITNGLEDLSLHYLPSFADAEEE 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               L E +  KL   ++ +     TL GPHR DL      K +   +GS G+Q+   + 
Sbjct: 236 DEAVLFETFMIKLSQMKEQEIRRGMTLAGPHRDDLAFYINGKEV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF--D 356
           + LA   LI    G  P+LLLD++ + LD  ++  L         Q F+T T       D
Sbjct: 295 LKLAEIELIQEEIGEYPVLLLDDVLSELDPYRQTQLIETFQSK-VQTFITATGIESLNTD 353

Query: 357 SLNETAKFMRISNHQALC 374
            L   A    + + Q   
Sbjct: 354 KLKG-ASIFHVHDGQVGS 370


>gi|321313671|ref|YP_004205958.1| recombination protein F [Bacillus subtilis BSn5]
 gi|320019945|gb|ADV94931.1| recombination protein F [Bacillus subtilis BSn5]
          Length = 370

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 83/373 (22%), Positives = 160/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L ++ +RNY    L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++
Sbjct: 1   MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG     + +I ++    +  +  ++N +  + + +    L    
Sbjct: 61  IRWDKD-----YAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFLD  +  + P +   +  +++++  RN  L         D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238
           +    +  Q+ E+  K+ + R++    L           +    +L+L     LD     
Sbjct: 176 TMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPL 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + + Y +     R+ +     TL GPHR D++     + +   +GS G+Q+   + 
Sbjct: 236 ELSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T     D  
Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNH 370
               A   R+ N 
Sbjct: 354 TLRQAGMFRVQNG 366


>gi|16077072|ref|NP_387885.1| recombination protein F [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221307813|ref|ZP_03589660.1| recombination protein F [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221312135|ref|ZP_03593940.1| recombination protein F [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221317068|ref|ZP_03598362.1| recombination protein F [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221321331|ref|ZP_03602625.1| recombination protein F [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|132246|sp|P05651|RECF_BACSU RecName: Full=DNA replication and repair protein recF
 gi|467394|dbj|BAA05240.1| recombination protein [Bacillus subtilis]
 gi|2632271|emb|CAB11780.1| DNA repair and genetic recombination factor [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 370

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 83/373 (22%), Positives = 160/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L ++ +RNY    L F+ +  + +G+N  GKTN++EAI  LS  +  R ++  ++
Sbjct: 1   MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         +A++EG     + +I ++    +  +  ++N +  + + +    L    
Sbjct: 61  IRWDKD-----YAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFLD  +  + P +   +  +++++  RN  L         D 
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNHFLKQLQTRKQTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQ 238
           +    +  Q+ E+  K+ + R++    L           +    +L+L     LD     
Sbjct: 176 TMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPL 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + + Y +     R+ +     TL GPHR D++     + +   +GS G+Q+   + 
Sbjct: 236 DLSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q F+T T     D  
Sbjct: 295 LKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQTFVTTTSVDGIDHE 353

Query: 358 LNETAKFMRISNH 370
               A   R+ N 
Sbjct: 354 TLRQAGMFRVQNG 366


>gi|315221608|ref|ZP_07863528.1| recombination protein F [Streptococcus anginosus F0211]
 gi|315189442|gb|EFU23137.1| recombination protein F [Streptococcus anginosus F0211]
          Length = 365

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 91/367 (24%), Positives = 154/367 (41%), Gaps = 10/367 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L I  FRNY +  + F +   IF+G N  GKTNILEAI FL+  R  R  S  D+
Sbjct: 1   MWLKKLQIQHFRNYEATEIDFHSGLNIFLGQNAQGKTNILEAIYFLALTRSHRTRSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F     ++ G        I LE       R  ++N +    + +   ++ +  
Sbjct: 61  I-----YFSKDTLKISGQLVKQTGKISLEIDLTPKGRITKVNHLKQSKLSDYVGNMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPALRRKFIDIELGQIKPIYLSDLSHYHHVLKQRNTYLKTAKTIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ E G ++   R+E +  L     +   + +     L++          S   L
Sbjct: 176 AVLDDQLVEFGCRVMQHRIEFLKKLEHFGQQKHLELSSHLENLTIKYCSSVPLSDS-NKL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE +   L   R  D   + T +GPHR D+     D       GS G+ + V++ + LA 
Sbjct: 235 KESFQIALKQSRSRDLFKKNTGVGPHRDDIAFCINDMN--ANFGSQGQHRSVVLSLKLAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L+   T   PILLLD++ + LD  ++  L   ++    Q FMT T      ++    K
Sbjct: 293 IELMETVTKEKPILLLDDVMSELDNSRQLNLLETISQ-NIQTFMTTTTLEHLQNVPSNIK 351

Query: 364 FMRISNH 370
              I   
Sbjct: 352 IFSIHEG 358


>gi|329925052|ref|ZP_08279996.1| DNA replication and repair protein RecF [Paenibacillus sp. HGF5]
 gi|328940171|gb|EGG36503.1| DNA replication and repair protein RecF [Paenibacillus sp. HGF5]
          Length = 370

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 91/378 (24%), Positives = 156/378 (41%), Gaps = 16/378 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  +RNY  L+L       + +G N  GKTN++EA+  L+  +  R +   ++
Sbjct: 1   MFVKNVSLQHYRNYEKLQLEAFGDVNLIIGRNAQGKTNLMEALFVLALTKSHRTSKDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F  + A +         +++LE    +  +  +IN +  R + +    L +  
Sbjct: 61  I-----GFEQSSAHISAEIDRKYGTLRLELSLSQQGKKAKINGLEQRKLSDFIGSLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRFLD  +  + P +   +  +++++  RN LL +    G  + 
Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVAPSYLFHLQQYQKVLVQRNNLLKQLWGKGSAEQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQ 238
           +      +Q+AE GVKI   R + I  L        Q        LSL          ++
Sbjct: 176 AMLEIWNSQLAEHGVKIVKKRKQFIKKLQKWAESIHQGITNGLEDLSLHYLPSFADAEEE 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               L E +  KL   ++ +     TL GPHR DL      K +   +GS G+Q+   + 
Sbjct: 236 DEAVLFETFMIKLSQMKEQEIRRGMTLAGPHRDDLAFYINGKEV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF--D 356
           + LA   LI    G  P+LLLD++ + LD  ++  L         Q F+T T       D
Sbjct: 295 LKLAEIELIQEEIGEYPVLLLDDVLSELDPYRQTQLIETFQSK-VQTFITATGIESLNTD 353

Query: 357 SLNETAKFMRISNHQALC 374
            L   A    + + Q   
Sbjct: 354 KLKG-ASIFHVHDGQVGS 370


>gi|170016362|ref|YP_001727281.1| recombinational DNA repair ATPase (RecF pathway) [Leuconostoc
           citreum KM20]
 gi|226737812|sp|B1MW32|RECF_LEUCK RecName: Full=DNA replication and repair protein recF
 gi|169803219|gb|ACA81837.1| Recombinational DNA repair ATPase (RecF pathway) [Leuconostoc
           citreum KM20]
          Length = 378

 Score =  337 bits (865), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 158/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNYA+L L F     +F+G+N  GKTN+LE+I  L+  R  R +S  D+
Sbjct: 1   MELTSLKLVNYRNYANLELDFSPGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +         + G          L        +  ++N +    + +    L +  
Sbjct: 61  INWTAKE-----TTISGRIKKNISETPLSLHFSSKGKKARVNHLEQSKLSQYVGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    +  G    RRRF+D     ++P +   +  + R+++ RN  L         D+
Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNITQYRRILKDRNAYLKRLQLKQTKDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q+  +G ++ +AR   +  L +       + +    +L+L       F++  
Sbjct: 176 VFLDVLTDQLVSVGAEVILARQLFVRRLQAAAQPIHAEVSNQREQLTLVYQTSIDFEEHA 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +K  +A  L   R  + M   T++GPHR DL     +  + +  GS G+Q+   + 
Sbjct: 236 DLEQIKATFAATLNRQRTREVMQGSTVVGPHRDDLQFIVNENDVAV-FGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L++  TG  PILLLD++ + LD  ++  L   + D   Q F+T    S     
Sbjct: 295 IKLAEIDLMAQETGEYPILLLDDVLSELDASRQTHLLLAIQDK-VQTFITAPSLSDVARQ 353

Query: 358 LNETAKFMRISNHQA 372
           L  T K   +   + 
Sbjct: 354 LIHTPKVFHVKQGEI 368


>gi|116871427|ref|YP_848208.1| recombination protein F [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123460552|sp|A0AEJ1|RECF_LISW6 RecName: Full=DNA replication and repair protein recF
 gi|116740305|emb|CAK19423.1| DNA replication and repair protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 370

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 80/374 (21%), Positives = 159/374 (42%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       ++ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRVVKRGQTVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +        +   
Sbjct: 176 MLLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TL+GPHR D +     + +    GS G+Q+   + +
Sbjct: 236 PDTWKADLLQKMESIKQREIDRGVTLVGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +     Q F+T T  S  D   
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHDT 353

Query: 359 NETAKFMRISNHQA 372
            + A    +     
Sbjct: 354 LKQATTFYVEKGTV 367


>gi|227432903|ref|ZP_03914847.1| recombination protein F [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351336|gb|EEJ41618.1| recombination protein F [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 374

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 90/373 (24%), Positives = 160/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  +RNY+ L L F +   +F+G+N  GKTN+LE+I  L+  R  R +S  D+
Sbjct: 1   MELESLKLDHYRNYSDLTLEFSSGVNVFLGENAQGKTNLLESIYVLALARSHRTSSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +       A + G    +     L        +  ++N +    +      L +  
Sbjct: 61  VQWQAKE-----ATISGRVKRSISETPLSLHFSNKGKKARVNHLEQSKLSHYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P    +  G    RRRF+D     ++P +      ++++++ RN  L         D+
Sbjct: 116 FAPEDLELVKGAPSVRRRFIDMEFGQMNPLYLYNTTQYKQILKERNAYLKRLQLKQTTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
            +   +  Q+ ++G +I IAR E +N L         + +     +KL     +D   D 
Sbjct: 176 VFLDVLSEQLVDVGSQILIARQEFLNKLELAAQPIHAEISNQREALKLRYMSSVDFASDA 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   +K  +A  L   R  + M   T++GPHR +L  D     + I  GS G+Q+   + 
Sbjct: 236 SLEEVKSVFADALSRQRSREIMQGSTMVGPHRDELQFDVNGNNVAI-FGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           I LA   L+   TG  P+LLLD++ + LD  ++  L   + D   Q F+T    S     
Sbjct: 295 IKLAEIDLMQQETGEYPVLLLDDVLSELDASRQTHLLLAIQDK-VQTFITAPTLSDIARQ 353

Query: 358 LNETAKFMRISNH 370
           L    +   +   
Sbjct: 354 LIRKPRVFHVKQG 366


>gi|256851677|ref|ZP_05557065.1| recombination protein F [Lactobacillus jensenii 27-2-CHN]
 gi|260661606|ref|ZP_05862518.1| recombination protein F [Lactobacillus jensenii 115-3-CHN]
 gi|282934239|ref|ZP_06339516.1| DNA replication and repair protein RecF [Lactobacillus jensenii
           208-1]
 gi|297205286|ref|ZP_06922682.1| recombination protein F [Lactobacillus jensenii JV-V16]
 gi|256615635|gb|EEU20824.1| recombination protein F [Lactobacillus jensenii 27-2-CHN]
 gi|260547663|gb|EEX23641.1| recombination protein F [Lactobacillus jensenii 115-3-CHN]
 gi|281301713|gb|EFA93980.1| DNA replication and repair protein RecF [Lactobacillus jensenii
           208-1]
 gi|297149864|gb|EFH30161.1| recombination protein F [Lactobacillus jensenii JV-V16]
          Length = 374

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 154/374 (41%), Gaps = 15/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  +RN+  L   F     IF+G N  GKTN+LEA+ FL+  R  R  S  ++
Sbjct: 1   MYLKQLKLQNWRNFEELETDFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  +       + G    + +   L+ R +   +   IN +    +      L    
Sbjct: 61  IRFGQKAAI-----LSGHVVKSQVETDLQVRINTKGKKAWINRIEQSKLSRYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+P +      + ++++ +N  L +       D 
Sbjct: 116 FSPEDLALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSKDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+A L  +I   R++ +  LS    E     +    +L +            
Sbjct: 176 VFLEVLSDQLAGLAAEIISRRLKYLAYLSEYAKEAYAAISNEKERLEVVYNPSVTLTSGQ 235

Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            + +  Y + L         +  +  TL GPHR DL     DK     + S G+Q+ + +
Sbjct: 236 TSSESIYHEVLACFKKNEAGEIRTGTTLAGPHRDDLQF-LLDKKDAHLYASQGQQRTIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +LI   TG  P LLLD++ + LD  +++AL   +    +Q F+T TD      
Sbjct: 295 SLKLAEIQLIHQITGEYPTLLLDDVMSELDHTRQSALLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNH 370
            + +T K  R+   
Sbjct: 354 EIVKTPKIFRLKAG 367


>gi|254472181|ref|ZP_05085581.1| DNA replication and repair protein [Pseudovibrio sp. JE062]
 gi|211958464|gb|EEA93664.1| DNA replication and repair protein [Pseudovibrio sp. JE062]
          Length = 376

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 150/370 (40%), Positives = 223/370 (60%), Gaps = 5/370 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +++FRNY++  +  +++   FVGDNG GKTNILEAISFLS GRG RRA+  D+
Sbjct: 7   VALSRLALTDFRNYSAASVELNSRMIAFVGDNGAGKTNILEAISFLSAGRGLRRATLGDI 66

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      ++  A ++G  G   I   L   +    R ++I+    R  + L ++LR+ W
Sbjct: 67  ARADGAGGWAVSAVLDGEYGETRIGTGLTAGEP--GRRVRIDGEEARSSEALLEYLRVLW 124

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVPSMD +F+G + +RR+FLDR+V +++P H R +  FE+ +R RNRLL+EG     +  
Sbjct: 125 LVPSMDGLFTGSASDRRKFLDRLVLSLNPSHGRMVASFEKALRQRNRLLSEGGT-PEFLD 183

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTG-FLDGKFDQSFCA 242
           +IEAQ+AELG  + +AR E ++ L+  +    Q    FP  ++ L G F       S   
Sbjct: 184 AIEAQVAELGTAVALARSETVSLLAKTLETQKQLGLPFPSAEIHLQGAFETATIGMSASD 243

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            ++ Y + L +GR  D  + RTL GPHRSDL V + +K +  A  STGEQK +L+G+ LA
Sbjct: 244 REDCYRELLVEGRFRDRAAGRTLDGPHRSDLYVVHSEKQMPAAQASTGEQKALLIGLVLA 303

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA L S+ +G  PILLLDE++AHLD  +R ALF  +  +G Q+FMTGTD+++F  L   A
Sbjct: 304 HADLTSSISGMTPILLLDEVAAHLDPGRREALFTRLEVLGGQVFMTGTDQNLFKDLPSAA 363

Query: 363 KFMRISNHQA 372
           +   +     
Sbjct: 364 QIFEVEGGGI 373


>gi|81427620|ref|YP_394617.1| recombination protein F [Lactobacillus sakei subsp. sakei 23K]
 gi|97180789|sp|Q38ZS1|RECF_LACSS RecName: Full=DNA replication and repair protein recF
 gi|78609259|emb|CAI54306.1| DNA repair and recombination protein RecF (Recombinational DNA
           repair ATPase) [Lactobacillus sakei subsp. sakei 23K]
          Length = 375

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 165/377 (43%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L ++ +RNY S+ + F     + +G+N  GKTN+LEAI  L+  R  R  +  ++
Sbjct: 1   MYLSELQLNHYRNYESVDVHFSPDTNVLIGENAQGKTNLLEAIYVLALARSHRTNTDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +         FA++ G+   +     LE    +  +  ++N +    + +    L +  
Sbjct: 61  IQWHED-----FAKITGLVQRSAGKTPLELVLSQKGKKAKVNHLEQAKLSQYIGQLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    I  G    RR F+D     +  ++   +  ++ +++ RN+ L         D 
Sbjct: 116 FAPEDLNIVKGSPAVRRHFIDMEFGQMSSKYLYNISQYKSILKQRNQYLKQLQRRQAKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFD 237
            +   +  Q+A  G ++ +AR + +  +     +  Q+       L+        + + D
Sbjct: 176 VYLGVLSDQLAAYGAEVTVARRQFLQQMEKWAQKLHQEITKDREVLTFKYQSQIPEEQLD 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           QS   L +++       +  +     TLIGPHR D+     DK +  A GS G+Q+   +
Sbjct: 236 QSVEELYQQFQTLYEKQQIREVEQGTTLIGPHRDDVQFLVNDKDV-QAFGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356
            + LA   L+   TG  PILLLD++ + LD+ ++  L +   +   Q F+T T  ++V  
Sbjct: 295 SVKLAEIDLMKAQTGEYPILLLDDVLSELDDLRQTHLLKTFQNK-VQTFLTTTSLENVKK 353

Query: 357 SLNETAKFMRISNHQAL 373
            +  T +   ++N   +
Sbjct: 354 EIIATPRVFTVTNGVVI 370


>gi|310639475|ref|YP_003944233.1| DNA replication and repair protein recf [Paenibacillus polymyxa
           SC2]
 gi|309244425|gb|ADO53992.1| DNA replication and repair protein recF [Paenibacillus polymyxa
           SC2]
          Length = 371

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 89/376 (23%), Positives = 154/376 (40%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + + ++RNY  L L       + +G N  GKTN++EAI  L+  +  R +   ++
Sbjct: 1   MFVNNIVLQQYRNYEQLELNEFGPVNLLIGQNAQGKTNLVEAIFVLALTKSHRTSRDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+ S     A V+   G   + + L T+  ++    +IN +  R + +    L +  
Sbjct: 61  ISFGATSTH-LAADVDKKYGKIRLDLSLSTQGKKA----KINGLEQRKLSDFIGSLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P    I  G    RRRFLD  +  + P +   +  +++++  RN LL + +       
Sbjct: 116 FAPEDLEIVKGTPGVRRRFLDMEIGQVAPGYLYHLQQYQKVLVQRNNLLKQAWGKDMASV 175

Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFD 237
                    Q+ E GVKI   R + I  L        +       +L LT         +
Sbjct: 176 QLMLEVWNEQLVEHGVKIVKKRKQFITKLQKWAQAIHEGIAGGTEELKLTYVPSFGEPEE 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    L E +  KL   R+ +     TL GPHR DL      + +   +GS G+Q+   +
Sbjct: 236 EDEAVLLERFMIKLSQMREQEIRRGMTLAGPHRDDLAFAINGREV-HTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA   LI    G  PILLLD++ + LD  ++  L         Q F+T T     ++
Sbjct: 295 SLKLAEIELIHEEIGEYPILLLDDVLSELDPYRQTQLIETFQSK-VQTFITATGIETLNA 353

Query: 358 LN-ETAKFMRISNHQA 372
              + A    + +   
Sbjct: 354 ERLKGAHIYHVHDGHV 369


>gi|304385858|ref|ZP_07368202.1| recombination protein F [Pediococcus acidilactici DSM 20284]
 gi|304328362|gb|EFL95584.1| recombination protein F [Pediococcus acidilactici DSM 20284]
          Length = 374

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 157/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRNYA L + F +   + +G+N  GKTN+LE+I FL+  R  R ++  D+
Sbjct: 1   MYLKTLELHNFRNYADLSVEFGSGINVLLGENAQGKTNLLESIYFLALTRSHRTSNDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +       ARV G          +E       +  ++N +    + +    L +  
Sbjct: 61  IGWKAKE-----ARVLGTIQKEHTQTPVEIDISSKGKNAKVNHIEQGRLSQYVGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    I  G    RRRF+D     +  ++      +  +++ RN+ L +   D     
Sbjct: 116 FAPEDLSIVKGSPAVRRRFIDMEFGQMSSKYLYNSAQYRSVLKQRNQYLKQLQIDPKGDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q+A  G +I   R++ +  L        ++ +    KL+       K D+  
Sbjct: 176 VYLDVLSDQLAAYGAEIIFQRIQFLKKLEEWSQAVHEEISQGLEKLTFQYVSPLKKDETT 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   +     + L   R+ +    +TL+GPH  D+      K ++   GS G+Q+   + 
Sbjct: 236 STETIYTALQELLKKHRQRELQQGKTLVGPHLDDVKFIVNGKNVS-TFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDS 357
           + LA   L+   TG  P+LLLD++ + LD+ ++  L   + +   Q F+T T  S V   
Sbjct: 295 VKLAEIDLMKEETGEYPVLLLDDVLSELDDSRQTHLLTAIQNK-VQTFITTTSLSGVAQQ 353

Query: 358 LNETAKFMRISNH 370
           L        I + 
Sbjct: 354 LINEPHVFNIDHG 366


>gi|227550643|ref|ZP_03980692.1| recombination protein F [Enterococcus faecium TX1330]
 gi|257896290|ref|ZP_05675943.1| recombination protein F [Enterococcus faecium Com12]
 gi|227180222|gb|EEI61194.1| recombination protein F [Enterococcus faecium TX1330]
 gi|257832855|gb|EEV59276.1| recombination protein F [Enterococcus faecium Com12]
          Length = 374

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 163/374 (43%), Gaps = 14/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  IGWNDDQ-----AMIQGEIAKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238
            +   +  Q+A  G K+  AR + I  L        Q+   +   +++     +D     
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFIKRLEFWANSLHQQITHHKEQLEIEYLTAVDSLETH 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   ++E++   L   +K D     T +GPHR DL      K +   +GS G+Q+   + 
Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           I LA   LI   TG  PILLLD++ + LD++++  L   +     Q F+T T      + 
Sbjct: 295 IKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353

Query: 358 LNETAKFMRISNHQ 371
           +    +   +   +
Sbjct: 354 MTVEPEIFYVRQGK 367


>gi|86747131|ref|YP_483627.1| recombination protein F [Rhodopseudomonas palustris HaA2]
 gi|86570159|gb|ABD04716.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           HaA2]
          Length = 378

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 145/370 (39%), Positives = 211/370 (57%), Gaps = 3/370 (0%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNY +  L   A+  + VG NG GKTN LEAISFLSPGRG RRA+  DV 
Sbjct: 5   RITRLTLTHFRNYRAAVLTTSAERVVLVGANGAGKTNCLEAISFLSPGRGLRRATLDDVA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++  A VEG  GLA +   ++    D  + R  +I+   +        HLR+ 
Sbjct: 65  DNEGDGSWAVAAEVEGALGLATLGTGIDPPRADAATSRRCRIDREPVGSATAFGDHLRMV 124

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P+MD +F G + ERRRF DR+V AID +H  R+   +R +R RNRLL   Y D+ W 
Sbjct: 125 WLTPAMDGLFMGAASERRRFFDRLVLAIDSQHSGRVSALDRSLRSRNRLLEVRYPDAHWL 184

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242
            +IE + AEL V +   R +    L++++        FP  K+ L G+++     +   A
Sbjct: 185 DAIERETAELAVAVAAMRGQTAMRLAAMLDARGAASAFPSAKIMLDGWMESALLTEPATA 244

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++ Y   L +GR  D+ + RTL GPH +DL V Y  KA+     STGEQK +L+G+ LA
Sbjct: 245 VEDRYRTILREGRPRDAAAGRTLDGPHLTDLEVVYAPKAMPARDASTGEQKALLIGLVLA 304

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA+L+S  TG  P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D + F  +   A
Sbjct: 305 HAQLVSEMTGITPLLLLDEVVAHLDPSRRAALFEELAKLGAQVWMTGADPAAFAEIGSGA 364

Query: 363 KFMRISNHQA 372
           +   + + + 
Sbjct: 365 EIFTVESGRI 374


>gi|329576321|gb|EGG57836.1| DNA replication and repair protein RecF [Enterococcus faecalis
           TX1467]
          Length = 375

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 87/376 (23%), Positives = 168/376 (44%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +     A++ G+      ++ LE       R  ++N +  + +      L +  
Sbjct: 61  IGWEQAA-----AKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +     Y D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKYPDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q+AE G K+  AR+  +  L        QK +     L++        D   
Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTD 235

Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S  AL+ +  ++L + RK +     T +GPHR DL+     + +   +GS G+Q+   +
Sbjct: 236 LSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356
            I LA   L+ + TG  P+LLLD++ + LD +++  L   +     Q F+T T      D
Sbjct: 295 SIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDHIKD 353

Query: 357 SLNETAKFMRISNHQA 372
            L        +   + 
Sbjct: 354 KLTVEPDIFYVQQGKI 369


>gi|257899274|ref|ZP_05678927.1| recombination protein F [Enterococcus faecium Com15]
 gi|293572721|ref|ZP_06683685.1| DNA replication and repair protein RecF [Enterococcus faecium E980]
 gi|257837186|gb|EEV62260.1| recombination protein F [Enterococcus faecium Com15]
 gi|291607213|gb|EFF36571.1| DNA replication and repair protein RecF [Enterococcus faecium E980]
          Length = 374

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 163/374 (43%), Gaps = 14/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  IGWNDDQ-----AMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238
            +   +  Q+A  G K+  AR + I  L        Q+   +   +++     +D     
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFIKRLEFWANSLHQQITHHKEQLEIEYLTAVDSLETH 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   ++E++   L   +K D     T +GPHR DL      K +   +GS G+Q+   + 
Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   LI   TG  PILLLD++ + LD++++  L   +     Q F+T T      + 
Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353

Query: 358 LNETAKFMRISNHQ 371
           +    +   +   +
Sbjct: 354 MTVEPEIFYVRQGK 367


>gi|257878649|ref|ZP_05658302.1| recombination protein F [Enterococcus faecium 1,230,933]
 gi|257812877|gb|EEV41635.1| recombination protein F [Enterococcus faecium 1,230,933]
          Length = 374

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 163/374 (43%), Gaps = 14/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  +    A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  I-----GWTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQTRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
            +   +  Q+A  G K+  AR + +  L        Q+       +++     +D     
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITHQKEQLEIEYLTAVDSLETH 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   ++E++   L   +K D     T +GPHR DL      K +   +GS G+Q+   + 
Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   LI   TG  PILLLD++ + LD++++  L   +     Q F+T T      + 
Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353

Query: 358 LNETAKFMRISNHQ 371
           +    +   +   +
Sbjct: 354 MTVEPEIFYVQQGK 367


>gi|256060148|ref|ZP_05450330.1| recombination protein F [Brucella neotomae 5K33]
 gi|261324125|ref|ZP_05963322.1| DNA replication and repair protein recF [Brucella neotomae 5K33]
 gi|261300105|gb|EEY03602.1| DNA replication and repair protein recF [Brucella neotomae 5K33]
          Length = 384

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 231/371 (62%), Gaps = 2/371 (0%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            DV R  +   F+  A ++ M                  R ++IN +     D+L  + R
Sbjct: 71  DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|16799084|ref|NP_469352.1| recombination protein F [Listeria innocua Clip11262]
 gi|20978613|sp|Q92FU8|RECF_LISIN RecName: Full=DNA replication and repair protein recF
 gi|16412426|emb|CAC95238.1| RecF protein [Listeria innocua Clip11262]
          Length = 370

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 159/374 (42%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       ++ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRVVKRGQTVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGVRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +        +   
Sbjct: 176 MLLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + +
Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +     Q F+T T  S  D + 
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHNT 353

Query: 359 NETAKFMRISNHQA 372
              A    +     
Sbjct: 354 LRQATTFYVEKGTV 367


>gi|270289889|ref|ZP_06196115.1| DNA replication and repair protein recF [Pediococcus acidilactici
           7_4]
 gi|270281426|gb|EFA27258.1| DNA replication and repair protein recF [Pediococcus acidilactici
           7_4]
          Length = 374

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 157/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRNYA L + F +   + +G+N  GKTN+LE+I FL+  R  R ++  D+
Sbjct: 1   MYLKTLELHNFRNYADLSVEFGSGINVLLGENAQGKTNLLESIYFLALTRSHRTSNDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +       ARV G          +E       +  ++N +    + +    L +  
Sbjct: 61  IGWKAKE-----ARVLGTIQKEHTQTPVEIDISSKGKNAKVNHIEQGRLSQYVGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    I  G    RRRF+D     +  ++      +  +++ RN+ L +   D     
Sbjct: 116 FAPEDLSIVKGSPAVRRRFIDMEFGQMSSKYLYNSAQYRSVLKQRNQYLKQLQIDPKGDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q+A  G +I   R++ +  L        ++ +    KL+       K D+  
Sbjct: 176 VYLDVLSDQLAAYGAEIIFQRIQFLKKLEEWSQAVHEEISQGLEKLTFQYVSPLKKDETT 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   +     + L   R+ +    +TL+GPH  D+      K ++   GS G+Q+   + 
Sbjct: 236 STETIYTALQELLKKHRQRELQQGKTLVGPHLDDVRFIVNGKNVS-TFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDS 357
           + LA   L+   TG  P+LLLD++ + LD+ ++  L   + +   Q F+T T  S V   
Sbjct: 295 VKLAEIDLMKEETGEYPVLLLDDVLSELDDSRQTHLLTAIQNK-VQTFITTTSLSGVAQQ 353

Query: 358 LNETAKFMRISNH 370
           L        I + 
Sbjct: 354 LINEPHVFNIDHG 366


>gi|257888092|ref|ZP_05667745.1| recombination protein F [Enterococcus faecium 1,141,733]
 gi|293379371|ref|ZP_06625515.1| DNA replication and repair protein RecF [Enterococcus faecium
           PC4.1]
 gi|257824146|gb|EEV51078.1| recombination protein F [Enterococcus faecium 1,141,733]
 gi|292641894|gb|EFF60060.1| DNA replication and repair protein RecF [Enterococcus faecium
           PC4.1]
          Length = 374

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 163/374 (43%), Gaps = 14/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  IGWNDDQ-----AMIQGEIAKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238
            +   +  Q+A  G K+  AR + I  L        Q+   +   +++     +D     
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFIKRLEFWANSLHQQITHHKEQLEIEYLTAVDSLETH 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   ++E++   L   +K D     T +GPHR DL      K +   +GS G+Q+   + 
Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   LI   TG  PILLLD++ + LD++++  L   +     Q F+T T      + 
Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353

Query: 358 LNETAKFMRISNHQ 371
           +    +   +   +
Sbjct: 354 MTVEPEIFYVRQGK 367


>gi|227889154|ref|ZP_04006959.1| recombination protein F [Lactobacillus johnsonii ATCC 33200]
 gi|227850383|gb|EEJ60469.1| recombination protein F [Lactobacillus johnsonii ATCC 33200]
          Length = 374

 Score =  336 bits (862), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 161/376 (42%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    + +FRN+  L++ FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++
Sbjct: 1   MYLANFELKDFRNFEELKINFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FA ++G    + + ++L+ R   + +   +N +  + +      +    
Sbjct: 61  IRFGSK-----FAGLQGKVHKSQLEVELKLRLTPNGKKAWVNRLEQKKLSAYVGQMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D 
Sbjct: 116 FSPEDLALVKGAPSTRRRFMDLEFGQINSEYLYFLSQYRQVLQQRNNYLKQLSIKKANDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
            +   +  Q+A +  +I   R++ I  L+S       + +    KL +      K    D
Sbjct: 176 VFLDVLSDQLAGIAAEIISRRIKYIKKLNSYAQSAHSEISGQAEKLQIFYRPSVKEITPD 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                + ++        R  +     TL GPHR DL     DK       S G+Q+ + +
Sbjct: 236 DDVETIYQKVITSYKKNRPNEIRKGTTLSGPHRDDLDFLINDKN-AHDFASQGQQRTISL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +L+   T   PILLLD++ + LD  ++++L   +    +Q F+T TD      
Sbjct: 295 SVKLAEIQLVHELTQEYPILLLDDVMSELDNRRQSSLLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  K   IS    
Sbjct: 354 EIVKEPKVYHISAGTI 369


>gi|260588814|ref|ZP_05854727.1| RecF protein [Blautia hansenii DSM 20583]
 gi|260540593|gb|EEX21162.1| RecF protein [Blautia hansenii DSM 20583]
          Length = 361

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 158/375 (42%), Gaps = 21/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  +RNY SL L FD    IF GDN  GKTNILEA    S  +  R +   ++
Sbjct: 1   MYIESIELKNYRNYNSLALEFDKGTNIFYGDNAQGKTNILEAAYLCSTTKSHRGSKDREL 60

Query: 65  TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +  +       F   +G+    D+ +K         + + I+ + IR   EL   L I 
Sbjct: 61  IKFDADEAHIRMFVNKDGISRKIDMHLK-----KSKPKGIAIDGIPIRKASELFGLLNIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRF+D  +  +D  +   +  +  ++  RN+LL +  F  S  
Sbjct: 116 FFSPEDLNIIKNGPGERRRFMDLELCQLDKLYLSNLSSYNHVLNQRNKLLKDIAFQESLK 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q  + G +I   R   I+ ++ ++ +          K+ L            
Sbjct: 176 DTLEIWDEQFVQYGREIIETRRRFIDEINGIMEKIHSSITGNREKIELVY--------EP 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E + ++L   R+ D   ++T +GPHR D  V      I   +GS G+Q+   + + 
Sbjct: 228 SVPDENFYQELSKNREKDCRFKQTSVGPHRDDFSVKVNGIDIR-RYGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359
           L+   ++       P+LLLD++ + LD +++N L   ++    Q  +T T    F D   
Sbjct: 287 LSEIYMVKKVIKDMPVLLLDDVLSELDSNRQNYLLNSISH--VQTMITCTGLDDFIDKRF 344

Query: 360 ETAKFMRISNHQALC 374
              K  ++ +    C
Sbjct: 345 HINKIFKVIDGDVFC 359


>gi|69246709|ref|ZP_00604077.1| RecF protein [Enterococcus faecium DO]
 gi|257881315|ref|ZP_05660968.1| recombination protein F [Enterococcus faecium 1,231,502]
 gi|257890532|ref|ZP_05670185.1| recombination protein F [Enterococcus faecium 1,231,410]
 gi|257893107|ref|ZP_05672760.1| recombination protein F [Enterococcus faecium 1,231,408]
 gi|258615267|ref|ZP_05713037.1| recombination protein F [Enterococcus faecium DO]
 gi|260558230|ref|ZP_05830426.1| RecF protein [Enterococcus faecium C68]
 gi|261206920|ref|ZP_05921609.1| RecF protein [Enterococcus faecium TC 6]
 gi|289566503|ref|ZP_06446927.1| DNA replication and repair protein recF [Enterococcus faecium
           D344SRF]
 gi|293563254|ref|ZP_06677706.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1162]
 gi|293569156|ref|ZP_06680462.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1071]
 gi|294616656|ref|ZP_06696427.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1636]
 gi|294623762|ref|ZP_06702590.1| DNA replication and repair protein RecF [Enterococcus faecium
           U0317]
 gi|314940128|ref|ZP_07847308.1| recombination protein F [Enterococcus faecium TX0133a04]
 gi|314943041|ref|ZP_07849845.1| recombination protein F [Enterococcus faecium TX0133C]
 gi|314948159|ref|ZP_07851555.1| recombination protein F [Enterococcus faecium TX0082]
 gi|314953427|ref|ZP_07856345.1| recombination protein F [Enterococcus faecium TX0133A]
 gi|314993834|ref|ZP_07859170.1| recombination protein F [Enterococcus faecium TX0133B]
 gi|314998141|ref|ZP_07863023.1| recombination protein F [Enterococcus faecium TX0133a01]
 gi|68195123|gb|EAN09582.1| RecF protein [Enterococcus faecium DO]
 gi|257816973|gb|EEV44301.1| recombination protein F [Enterococcus faecium 1,231,502]
 gi|257826892|gb|EEV53518.1| recombination protein F [Enterococcus faecium 1,231,410]
 gi|257829486|gb|EEV56093.1| recombination protein F [Enterococcus faecium 1,231,408]
 gi|260075404|gb|EEW63710.1| RecF protein [Enterococcus faecium C68]
 gi|260078548|gb|EEW66250.1| RecF protein [Enterococcus faecium TC 6]
 gi|289161712|gb|EFD09588.1| DNA replication and repair protein recF [Enterococcus faecium
           D344SRF]
 gi|291588125|gb|EFF19967.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1071]
 gi|291590476|gb|EFF22214.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1636]
 gi|291596716|gb|EFF27939.1| DNA replication and repair protein RecF [Enterococcus faecium
           U0317]
 gi|291604793|gb|EFF34275.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1162]
 gi|313587853|gb|EFR66698.1| recombination protein F [Enterococcus faecium TX0133a01]
 gi|313591725|gb|EFR70570.1| recombination protein F [Enterococcus faecium TX0133B]
 gi|313594530|gb|EFR73375.1| recombination protein F [Enterococcus faecium TX0133A]
 gi|313598241|gb|EFR77086.1| recombination protein F [Enterococcus faecium TX0133C]
 gi|313640633|gb|EFS05213.1| recombination protein F [Enterococcus faecium TX0133a04]
 gi|313645413|gb|EFS09993.1| recombination protein F [Enterococcus faecium TX0082]
          Length = 374

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 163/374 (43%), Gaps = 14/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  +    A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  I-----GWTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
            +   +  Q+A  G K+  AR + +  L        Q+       +++     +D     
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITHQKEQLEIEYLTAVDSLETH 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   ++E++   L   +K D     T +GPHR DL      K +   +GS G+Q+   + 
Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   LI   TG  PILLLD++ + LD++++  L   +     Q F+T T      + 
Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353

Query: 358 LNETAKFMRISNHQ 371
           +    +   +   +
Sbjct: 354 MTVEPEIFYVQQGK 367


>gi|291561641|emb|CBL40440.1| DNA replication and repair protein RecF [butyrate-producing
           bacterium SS3/4]
          Length = 361

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 93/372 (25%), Positives = 162/372 (43%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +S++RNY+ L + F     +  GDN  GKTNILEA+   S  +  R +   ++
Sbjct: 1   MFIESIELSDYRNYSHLHIDFHKGTNVLYGDNAQGKTNILEAVYVCSTTKSHRGSKDKEI 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+  S      R +G+    D+ +K         + + +N V I+   EL   + + 
Sbjct: 61  IRFGADESHIKMMVRRDGIPYRIDMHLK-----KNKAKGVAVNGVPIKKASELFGIVNVI 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRF+D  +  ++  +   +  + + +  RN+LL +  +++S  
Sbjct: 116 FFSPEDLNIIKNGPAERRRFVDLELCQLNRLYVYNLAQYNKTVIQRNKLLKDIDYNTSLK 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                   Q+ + G ++ I R E I  L+ LI E     +     LS+    +       
Sbjct: 176 ETLPMWNEQLLKYGTELIIMRSEFIKELNPLIAEIHAGLSGGKETLSIAYEPNVS----- 230

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E + ++L   +  +   R+TL GPHR DL        I    GS G+Q+   + + 
Sbjct: 231 ---PENFREQLAKNQFQEIRQRQTLTGPHRDDLNFIVNGTDIR-RFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L+       P+LLLD++ + LD  ++  L   +T I + I  TG D+ V      
Sbjct: 287 LAEIELVKKIVKDYPVLLLDDVLSELDSKRQEHLLSEITHIQTLITCTGLDEFVNSKFRM 346

Query: 361 TAKFMRISNHQA 372
             K  +I     
Sbjct: 347 D-KIFKIVEGTV 357


>gi|289433378|ref|YP_003463250.1| DNA replication and repair protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289169622|emb|CBH26156.1| DNA replication and repair protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 370

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 158/374 (42%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       ++ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRIEKRGQTVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN  L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNHYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +            
Sbjct: 176 LLLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHSQISRGLETLKIEYKASVTLAGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + +
Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +     Q F+T T  S  D + 
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHNT 353

Query: 359 NETAKFMRISNHQA 372
            + A    +     
Sbjct: 354 LKQATTFYVEKGTV 367


>gi|90421531|ref|YP_529901.1| recombination protein F [Rhodopseudomonas palustris BisB18]
 gi|90103545|gb|ABD85582.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           BisB18]
          Length = 379

 Score =  336 bits (861), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 142/370 (38%), Positives = 207/370 (55%), Gaps = 3/370 (0%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI  L ++ FRNY +  +       + VG NG GKTN LEAIS LSPGRG RRA+  D+ 
Sbjct: 5   KIHRLTLTHFRNYRAASVTVRGDVVVLVGPNGAGKTNCLEAISLLSPGRGLRRATLDDIA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVDELNKHLRIS 123
                  ++  A VEG  GLA +   ++ R + +   R  +I+   +        HLR+ 
Sbjct: 65  DNHGDGSWAVSAEVEGALGLATLGTGIDPRTEAAATTRRCRIDRENVGSAAAFGDHLRMV 124

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P+MD +F G + ERRRF DR+V AID +H  R+   +R +R RNRLL +   DS W 
Sbjct: 125 WLTPAMDGLFLGAASERRRFFDRLVLAIDSQHSSRVSALDRSLRSRNRLLEQRSHDSHWL 184

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242
            +IE + AEL V +   R E +  L++ + +      FP   ++L G+++     +   A
Sbjct: 185 DAIERETAELAVAVAAMRGETVTRLAAALAQRSADSAFPSATIALDGWMENALRSEPATA 244

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++ Y   L D R  D+ + RTL GPH +DL V Y  K +     STGEQK +L+G+ LA
Sbjct: 245 VEDRYRTSLRDNRARDAAAGRTLDGPHLTDLRVIYTPKNMPARDASTGEQKALLIGLVLA 304

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA L++  TG  P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D + F  L E  
Sbjct: 305 HAYLVAEMTGITPLLLLDEVVAHLDPSRRKALFGELARLGAQVWMTGADPAAFVDLGEGG 364

Query: 363 KFMRISNHQA 372
           +   + N + 
Sbjct: 365 ELFEVDNGRI 374


>gi|294619748|ref|ZP_06699153.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1679]
 gi|291594018|gb|EFF25487.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1679]
          Length = 374

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 162/374 (43%), Gaps = 14/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  +    A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  I-----GWTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
            +   +  Q+A  G K+  AR + +  L        Q+       +++     +D     
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITHQKEQLEIEYLTAVDSLETH 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   ++E++   L   +K D     T +GPHR DL      K +   +GS G+Q+   + 
Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   LI   TG  PILLLD++ + LD+ ++  L   +     Q F+T T      + 
Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDSRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353

Query: 358 LNETAKFMRISNHQ 371
           +    +   +   +
Sbjct: 354 MTVEPEIFYVQQGK 367


>gi|118443917|ref|YP_879295.1| recombination protein F [Clostridium novyi NT]
 gi|166220706|sp|A0Q3U3|RECF_CLONN RecName: Full=DNA replication and repair protein recF
 gi|118134373|gb|ABK61417.1| recF protein [Clostridium novyi NT]
          Length = 361

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 170/370 (45%), Gaps = 13/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  FRNY  L L   +   +F+GDN  GKTNILE+I + S G+  R     ++
Sbjct: 1   MYIKNLELINFRNYEILSLKLHSGINVFIGDNAQGKTNILESIYYCSIGKSHRTNKDKEL 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G+  ++ S +   E ++   DI I  E       + +++N + ++ + +L     + 
Sbjct: 61  IKWGARDAYISVYISKERLDKKIDIKIFKE-----GKKGVRVNSIKLKTISDLIGVFNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   +I       RR+FLD  +  ++ ++   ++ + +++  RN +L +   ++   
Sbjct: 116 MFSPEDLKIVKESPSYRRKFLDIELSKLNKKYYYSLVRYNKVLNERNTILRKWNSNTEVT 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+++ G  I   R++ I +LS    +  +        +        K       +
Sbjct: 176 EVYDHQLSKYGSYIIKERLKYIESLSIRGNKIHKDITSQKENIEFKYITSIK---DLNNI 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + ++   L +  K D     T  GPHR D  V+  +   T   GS G+Q+  ++ I LA 
Sbjct: 233 QNDFYNLLRENVKKDFEKGSTSFGPHRDDFAVNINNTD-TRTFGSQGQQRTAVLTIKLAS 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETA 362
             +I   TG  P+LLLD++ + LD +++  +   + +   Q  +TGT    + + L++  
Sbjct: 292 LEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIREF--QTIITGTGLIDIREYLDDHV 349

Query: 363 KFMRISNHQA 372
           K  +++N   
Sbjct: 350 KLFKVTNGTV 359


>gi|56961786|ref|YP_173508.1| recombination protein F [Bacillus clausii KSM-K16]
 gi|81679102|sp|Q5WM28|RECF_BACSK RecName: Full=DNA replication and repair protein recF
 gi|56908020|dbj|BAD62547.1| DNA replication and repair protein RecF [Bacillus clausii KSM-K16]
          Length = 372

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 158/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +S +RNY+   +VF  +  +FVG+N  GKTN+LEAI  ++  +  R     ++
Sbjct: 1   MIIHTLELSSYRNYSKTAVVFGEKINVFVGENAQGKTNLLEAIYVVALAKSHRTQKDKEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P F    A+ E   G  ++ I L  +  +     +IN +  R + +    L +  
Sbjct: 61  IGFEEP-FARIHAKAEKRTGEVELDIILSAKGKKG----KINGLEQRRLSDYVGTLNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P    +  G    RRRF+D  +  I P +   +  + ++++ RN LL       S   
Sbjct: 116 FAPEDLDLVKGSPQVRRRFIDMELGQISPVYLNSLSLYGKILKQRNVLLKNMQQKRSQNY 175

Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--Q 238
                +  Q+ +    +   R E I+ L        Q  +     L+L+     +    +
Sbjct: 176 AMVDVLTEQLIDKAAFVMKKRAEFISRLEEWATPIHQSISRGKEMLTLSYIPSIEVSDIE 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   +KE+  K     R+ +     TL GPHR D+        +  ++GS G+Q+   + 
Sbjct: 236 NMSKIKEDLYKAYETKRETEVRRGTTLFGPHRDDVSFSVNGLDV-QSYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   LI    G  PILLLD++ + LD  +++ L   +     Q F+T T  S   DS
Sbjct: 295 VKLAEIDLIYAEIGDYPILLLDDVLSELDNYRQSHLLEAIQA-RVQTFVTTTSTSGLDDS 353

Query: 358 LNETAKFMRISNHQA 372
           +   A    +     
Sbjct: 354 VLAEACLFSVDQGTV 368


>gi|255283817|ref|ZP_05348372.1| RecF protein [Bryantella formatexigens DSM 14469]
 gi|255265700|gb|EET58905.1| RecF protein [Bryantella formatexigens DSM 14469]
          Length = 360

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 154/372 (41%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + + +FRNY SL+L FD+   IF GDN  GKTNILEA+      +  R +   +V
Sbjct: 1   MIVQSIELEKFRNYKSLKLKFDSGTNIFYGDNAQGKTNILEAVYLCGTTKSHRGSKDREV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +        +  R++       I I +  +     + + IN V IR   EL       +
Sbjct: 61  IQFQEEE---SHLRMKVERNNVPIEIDMHLK-KNKPKGIAINGVPIRKASELFGIANFVF 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---S 181
             P    I       RR F+D  +  +   +   + ++ +++  RNRLL E  F      
Sbjct: 117 FSPEDLNIIKDGPSVRRHFIDMELCQLHKVYLHHLSNYNKVINQRNRLLKESAFRPDILD 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + QMAE G K+   R   I  L+ +I     +       L +             
Sbjct: 177 TLDIWDIQMAEYGKKVIEERRAFIRRLNEIIDSIHGRLTGEKEHLRIIY--------EEN 228

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
              EE+A+ L   R+ D   + ++ GPHR D+        I    GS G+Q+   + + L
Sbjct: 229 VTAEEFAEALRSSREKDLRMKMSMTGPHRDDICFQTNGVDIR-KFGSQGQQRTAALSLKL 287

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNE 360
           +   L+    G  PILLLD++ + LD  ++  L   + DI  Q F+T T    F  +   
Sbjct: 288 SEIELVKQEIGDTPILLLDDVLSELDSSRQKYLLDSIHDI--QTFITCTGLDDFVQNRFH 345

Query: 361 TAKFMRISNHQA 372
             K   +   + 
Sbjct: 346 INKVFHVVEGKV 357


>gi|148560734|ref|YP_001258052.1| recombination protein F [Brucella ovis ATCC 25840]
 gi|148371991|gb|ABQ61970.1| recF protein [Brucella ovis ATCC 25840]
          Length = 384

 Score =  335 bits (860), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 232/371 (62%), Gaps = 2/371 (0%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            DV R  +   F+  A ++ M                  R ++IN +     D+L  + R
Sbjct: 71  DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMDR+F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDRLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q F+TGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFITGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|257885590|ref|ZP_05665243.1| recombination protein F [Enterococcus faecium 1,231,501]
 gi|257821446|gb|EEV48576.1| recombination protein F [Enterococcus faecium 1,231,501]
          Length = 374

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 163/374 (43%), Gaps = 14/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L + F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNIEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  +    A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  I-----GWTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
            +   +  Q+A  G K+  AR + +  L        Q+       +++     +D     
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITHQKEQLEIEYLTAVDSLETH 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   ++E++   L   +K D     T +GPHR DL      K +   +GS G+Q+   + 
Sbjct: 236 TQEQIQEQFLALLNQNKKKDFFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   LI   TG  PILLLD++ + LD++++  L   +     Q F+T T      + 
Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDNRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353

Query: 358 LNETAKFMRISNHQ 371
           +    +   +   +
Sbjct: 354 MTVEPEIFYVQQGK 367


>gi|295398132|ref|ZP_06808181.1| recombination protein F [Aerococcus viridans ATCC 11563]
 gi|294973651|gb|EFG49429.1| recombination protein F [Aerococcus viridans ATCC 11563]
          Length = 371

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 161/377 (42%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  + + +FRNY  L + F     +F+G+N  GKT++LEAI  +S  R  R A+  D 
Sbjct: 1   MQLNDIKLKDFRNYEDLTVTFSPGVNVFIGENAQGKTSLLEAIYMMSLARSHRTANEKDT 60

Query: 65  TRIGSPSFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                      FAR+EG +    +  + L     +S +  ++N +    + +    L + 
Sbjct: 61  IHWKQD-----FARIEGSISTRTNPDLPLALTITKSGKRAKVNHLNQNRMSDYIGKLNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFD 179
              P    +  G    RR+F+D  +  + P++    + + RL++ RN  L +       D
Sbjct: 116 LFAPEDLELIKGAPQLRRKFIDMELGQMSPKYLYESVQYNRLLKQRNAYLKQLLYKETQD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFD 237
             +   +  Q+A     +   R+  ++ L S         +     + L+  G  +   D
Sbjct: 176 QIYLDILTEQLAASATHVIYQRLRFVDQLESWAKPIHSNISHGLEELTLAYRGPSELTLD 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +  A+ ++   K  + +  +     TL+GPHR DL      + +    GS G+Q+  ++
Sbjct: 236 MTEDAIYQQLMTKFKEKKDHEFARGVTLVGPHRDDLTFKVNGRDV-QKFGSQGQQRTTVL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA    +    G  PILLLD++ + LD++++  L + +     Q F+T T       
Sbjct: 295 SMKLAEIECMHEVLGEYPILLLDDVLSELDDERQTHLLKSIQSK-VQTFLTTTSLDGIQR 353

Query: 357 SLNETAKFMRISNHQAL 373
            L E  +   I     +
Sbjct: 354 ELIEEPRVFNIDAGAIV 370


>gi|229917452|ref|YP_002886098.1| DNA replication and repair protein RecF [Exiguobacterium sp. AT1b]
 gi|259563366|sp|C4KZZ0|RECF_EXISA RecName: Full=DNA replication and repair protein recF
 gi|229468881|gb|ACQ70653.1| DNA replication and repair protein RecF [Exiguobacterium sp. AT1b]
          Length = 372

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 156/374 (41%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  +RNY +L L F  Q  + +G+N  GKTN+LE+I  L+  +  R     ++
Sbjct: 1   MHLKSIRLQNYRNYETLELDFSEQTNVLIGENAQGKTNLLESIYVLALAKSHRTTQDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               + +  S   R+    G +  S+    +  ++    ++N +  R + +      +  
Sbjct: 61  IGWEADAA-SIEGRIHKRTGESVQSLSFSPKGKKA----KLNHLEQRRLSDYVGAFNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    I  G    RRRFLD  +  + P +   +  + + ++ RN LL +      D +
Sbjct: 116 FAPEDLAIVKGSPQGRRRFLDMEIGQVSPVYLHELNQYLKTLKQRNALLKQLSTKGGDET 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQS 239
               +  Q+ EL VKI + R   I+ L                 L++    D   K   S
Sbjct: 176 LLEVLTDQLIELAVKIVMRRYHFIDQLEKWANPIHSGITRDLETLTIQYVSDTFQKERFS 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              + E Y +K    R+ +     TL GPHR D  +   ++ +    GS G+Q+   + +
Sbjct: 236 KEQMFETYRQKFDKIRENERRRGVTLFGPHRDDFELYVNNRNV-QTFGSQGQQRTAALSL 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI    G  P+LLLD++ + LD+ ++  L   +     Q  +T T+        
Sbjct: 295 KLAEIELIHEEVGEYPLLLLDDVLSELDDHRQTHLLDTM-GRKVQTILTTTNIDGIAHET 353

Query: 359 NETAKFMRISNHQA 372
            + AK   +   + 
Sbjct: 354 IQQAKVFHVKQGEV 367


>gi|42518088|ref|NP_964018.1| recombination protein F [Lactobacillus johnsonii NCC 533]
 gi|51316301|sp|Q74M31|RECF_LACJO RecName: Full=DNA replication and repair protein recF
 gi|41582372|gb|AAS07984.1| DNA replication and repair protein RecF [Lactobacillus johnsonii
           NCC 533]
 gi|329666395|gb|AEB92343.1| recombination protein F [Lactobacillus johnsonii DPC 6026]
          Length = 374

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 161/376 (42%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    + +FRN+  L++ FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++
Sbjct: 1   MYLANFELKDFRNFEELKINFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FA ++G    + + ++L+ R   + +   +N +  + +      +    
Sbjct: 61  IRFGSK-----FAGLQGKVHKSQLEVELKLRLTPNGKKAWVNRLEQKKLSAYVGQMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D 
Sbjct: 116 FSPEDLALVKGAPSIRRRFMDLEFGQINSEYLYFLSQYRQVLQQRNNYLKQLSIKKANDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
            +   +  Q+A +  +I   R++ I  L+S       + +    KL +      K    D
Sbjct: 176 VFLDVLSDQLAGIAAEIISRRIKYIKKLNSYAQSAHSEISGQAEKLQIFYRPSVKEITPD 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                + ++        R  +     TL GPHR DL     DK       S G+Q+ + +
Sbjct: 236 DDVETIYQKVITSYKKNRPNEIRKGTTLSGPHRDDLDFLINDKN-AHDFASQGQQRTISL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +L+   T   PILLLD++ + LD  ++++L   +    +Q F+T TD      
Sbjct: 295 SVKLAEIQLVHELTQEYPILLLDDVMSELDHRRQSSLLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  K   IS    
Sbjct: 354 EIVKEPKVYHISAGTI 369


>gi|331004663|ref|ZP_08328125.1| hypothetical protein HMPREF0491_02987 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330409590|gb|EGG89030.1| hypothetical protein HMPREF0491_02987 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 363

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 168/372 (45%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L + ++RNY +L +   +   IF GDN  GKTNILE+I   +  +  R +   D+
Sbjct: 1   MIIESLELKDYRNYENLDIKLSSGVNIFYGDNAQGKTNILESIYLATTSKSHRGSKDKDI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123
            + GS       + ++ M      S++L+    +S  + + IN + IR + EL     + 
Sbjct: 61  IKFGSNE-----SHIKLMIEKNSSSVRLDMHLKKSKSKGVAINGIPIRKLSELFGTCNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---S 180
           +  P    I      ERR F+D  +  ++  +   ++ + +++  RN+LL E  F     
Sbjct: 116 FFSPEDLNIIKRSPKERRNFVDMELCQLNKLYVSTLVTYNKVLDQRNKLLKEIGFKSGVE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ + G  +   R   I  L+ +I       +    K+++    + +     
Sbjct: 176 DTLDIWDMQLVKYGKDLIAYREAFIKELNEVIYGIHSLLSGGE-KINVVYEKNVE----- 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              K+++ ++L   R  D   + T +GPHR D       +      GS G+Q+ + + + 
Sbjct: 230 ---KDDFEEELKKSRTSDIRYKTTNVGPHRDDFSFFLNGEMDLKKFGSQGQQRSLALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   LI +  G  P+LLLD++ + LD  +++ L   +  I + I  TG +  +  SL +
Sbjct: 287 LSEIELIKSRYGEFPVLLLDDVLSELDGKRQSHLLESIKHIQTLITCTGVEDFLNKSL-D 345

Query: 361 TAKFMRISNHQA 372
             K  +++N   
Sbjct: 346 IGKVFKVTNGTI 357


>gi|223043401|ref|ZP_03613447.1| DNA replication and repair protein RecF [Staphylococcus capitis
           SK14]
 gi|222443190|gb|EEE49289.1| DNA replication and repair protein RecF [Staphylococcus capitis
           SK14]
          Length = 371

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 90/377 (23%), Positives = 163/377 (43%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L + ++RNY  + L    +  I +G+N  GKTN+LE+I  L+  +  R ++  ++
Sbjct: 1   MKLNTLQLEKYRNYEEVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      +A++EG       ++ L     +  + +++N +    + +   HL +  
Sbjct: 61  IRFKAD-----YAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSKLTQYVGHLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D  +  I   +   +  ++R+++ +N  L +       D+
Sbjct: 116 FAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD---GKFD 237
           +    +  Q A+  +K+ + R   I  L  L             KL L          ++
Sbjct: 176 TMLEVLNQQFAQYALKVTLRREHFIKELEELAQPIHSGITNEREKLGLKYLPSLKLSDYE 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    L EE  + L D  + +      L GPHR DL  +         +GS G+Q+   +
Sbjct: 236 KEESELLEEVIELLNDNLQREKERGVCLYGPHRDDLGFNVNGMD-AQTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q F+T T     D 
Sbjct: 295 SIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDH 353

Query: 357 SLNETAKFMRISNHQAL 373
            +   AK  RIS  + L
Sbjct: 354 EIMNNAKLYRISQGELL 370


>gi|28376978|ref|NP_783870.1| recombination protein F [Lactobacillus plantarum WCFS1]
 gi|254555173|ref|YP_003061590.1| recombination protein F [Lactobacillus plantarum JDM1]
 gi|300769109|ref|ZP_07078998.1| recombination protein F [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308179195|ref|YP_003923323.1| recombination protein F [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|38258550|sp|Q890K5|RECF_LACPL RecName: Full=DNA replication and repair protein recF
 gi|28269809|emb|CAD62706.1| DNA repair and genetic recombination protein RecF [Lactobacillus
           plantarum WCFS1]
 gi|254044100|gb|ACT60893.1| recombination protein F [Lactobacillus plantarum JDM1]
 gi|300493349|gb|EFK28528.1| recombination protein F [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308044686|gb|ADN97229.1| recombination protein F [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 374

 Score =  335 bits (860), Expect = 7e-90,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 157/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRNYA L + F     + +G+N  GKTN+LEAI  L+  R  R A+  ++
Sbjct: 1   MYLENLVLHDFRNYADLTINFSQGVNVLLGENAQGKTNLLEAIYVLALTRSHRTANDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R       +T A ++G    +  ++ LE    R  +  ++N +    + +   +L +  
Sbjct: 61  IRWQ-----TTTATLQGRLHKSTGAVPLELELGRRGKRAKVNHLEQAKLSQYVGNLNVIV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180
             P    I  G    RRRF+D     + P++   +  +  +++ RN+ L     +   D 
Sbjct: 116 FAPEDLSIVKGAPAVRRRFMDMEFGQMSPKYLYNLSQYRTILKQRNQYLRQLNRQQAKDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
            +   +  Q+A  G +I   R++++  L         +      +L+      +      
Sbjct: 176 VYLGVLSDQLAAFGAEIIHKRLQLLQQLEKWAQAVHSEITQEQEQLTFHYVTQVPTADQT 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   + +         +  +     TL+GPHR DL      K +    GS G+Q+   + 
Sbjct: 236 SVDHIYQTLQALYQQQQAKEIFQGTTLLGPHRDDLQFGVNGKNV-QTFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+   TG  P+LLLD++ + LD  ++  L   + D   Q F+T          
Sbjct: 295 VKLAEIDLMKAETGEYPVLLLDDVLSELDAARQTHLLTAIQDK-VQTFLTTPSLDGVARK 353

Query: 358 LNETAKFMRISNH 370
           L    K   +S+ 
Sbjct: 354 LINAPKVFEVSHG 366


>gi|118590458|ref|ZP_01547860.1| recombination protein F [Stappia aggregata IAM 12614]
 gi|118436921|gb|EAV43560.1| recombination protein F [Stappia aggregata IAM 12614]
          Length = 382

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 161/369 (43%), Positives = 231/369 (62%), Gaps = 5/369 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L+++ FRNY++L L   A+   FVG NG GKTNILEAISFL+ GRG RRA+ AD+ 
Sbjct: 8   QLTRLSLTGFRNYSALTLPLTAKMAAFVGPNGAGKTNILEAISFLTAGRGLRRAALADIA 67

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           R G    +S  A V  +    +  I        S R ++I+   +R  + L  ++R+ WL
Sbjct: 68  RKGGDGSWSVAATV--LLDGFETRIGTGLVAGTSGRKVRIDGEEVRGSESLLDYMRVLWL 125

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           VPSMD +F+G   +RRRFLDR+  AIDP H RR+ DFE  +R RNRLL +G  D ++ S+
Sbjct: 126 VPSMDGLFTGPGSDRRRFLDRLTLAIDPTHGRRVSDFENALRQRNRLLDQGGSD-AYLSA 184

Query: 186 IEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHIKLSLTGFLDGKFD-QSFCAL 243
           +E Q+AELG  ++IAR E ++ LS +I  +  Q   FPH  +SL G  + +    S    
Sbjct: 185 LEQQVAELGTAVSIARTETVDLLSRMIAGQATQDLPFPHASVSLEGAFEAETAGLSASDR 244

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++ Y + L DGR  D  + RTL GPH SDL V +  KA+  +  STGEQK +L+G+ LAH
Sbjct: 245 EDRYRQMLQDGRHRDRAAGRTLNGPHLSDLTVFHAAKAMPASQSSTGEQKALLIGLILAH 304

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           A L +  +G  P+LLLDE++AHLD D+R+ALF  +  +G Q+FMTGTD+++F++L   A+
Sbjct: 305 AELTAKVSGMTPVLLLDEVAAHLDPDRRSALFSKLDSLGGQVFMTGTDEALFEALPAEAE 364

Query: 364 FMRISNHQA 372
              I  H+ 
Sbjct: 365 VFEIREHKG 373


>gi|283797182|ref|ZP_06346335.1| RecF protein [Clostridium sp. M62/1]
 gi|291075140|gb|EFE12504.1| RecF protein [Clostridium sp. M62/1]
 gi|295090281|emb|CBK76388.1| DNA replication and repair protein RecF [Clostridium cf.
           saccharolyticum K10]
 gi|295115476|emb|CBL36323.1| DNA replication and repair protein RecF [butyrate-producing
           bacterium SM4/1]
          Length = 368

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 160/374 (42%), Gaps = 19/374 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N + ++ + +  +RNY SL +VFD    +  GDN  GKTN+LEA+   +  +  R +   
Sbjct: 6   NNMFVESIELKNYRNYGSLSMVFDPGTNVLYGDNAQGKTNVLEAVYVCATTKSHRGSKDK 65

Query: 63  DVTRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           ++ R     S      R + +    D+ +K         + + IN V IR   EL   + 
Sbjct: 66  EIIRFAEDESHIKMNIRKDNVPYRIDMHLK-----KNKTKGIAINGVPIRRASELFGIVN 120

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           + +  P    I      ERRRF+D  +  ++  +   ++ + R +  RN+LL E  F   
Sbjct: 121 VVFFSPEDLNIIKNGPAERRRFVDLELCQLNRLYVHALVQYNRTLTQRNKLLKELPFKPE 180

Query: 182 W---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                   + Q+   G ++   R E    L+ +I +  ++ +    +L +    + +   
Sbjct: 181 LLETLDIWDMQLVSFGRELIRYRREFAGELNEMIRDIHRQLSGGREELVICYEPNTE--- 237

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                +E +   L  GR+ D   + TL GPHR DL        I    GS G+Q+   + 
Sbjct: 238 -----EEAFETALKRGREADIRQKTTLSGPHRDDLSFSVNGVDIR-RFGSQGQQRTAALS 291

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA   L+       P+LLLD++ + LD  ++  L   +  I + I  TG D  V  + 
Sbjct: 292 LKLAEIELVKKIVKDYPVLLLDDVLSELDSGRQQHLLSGIRHIQTIITCTGLDDFVAHAF 351

Query: 359 NETAKFMRISNHQA 372
           +   +  RI N   
Sbjct: 352 HID-RVFRIVNGTV 364


>gi|23500919|ref|NP_697046.1| recombination protein F [Brucella suis 1330]
 gi|161617994|ref|YP_001591881.1| recombination protein F [Brucella canis ATCC 23365]
 gi|163842280|ref|YP_001626684.1| recombination protein F [Brucella suis ATCC 23445]
 gi|254705188|ref|ZP_05167016.1| recombination protein F [Brucella suis bv. 3 str. 686]
 gi|254707296|ref|ZP_05169124.1| recombination protein F [Brucella pinnipedialis M163/99/10]
 gi|254709165|ref|ZP_05170976.1| recombination protein F [Brucella pinnipedialis B2/94]
 gi|256030689|ref|ZP_05444303.1| recombination protein F [Brucella pinnipedialis M292/94/1]
 gi|256158693|ref|ZP_05456572.1| recombination protein F [Brucella ceti M490/95/1]
 gi|256254094|ref|ZP_05459630.1| recombination protein F [Brucella ceti B1/94]
 gi|256368468|ref|YP_003105974.1| recombination protein F [Brucella microti CCM 4915]
 gi|260567346|ref|ZP_05837816.1| DNA replication and repair protein recF [Brucella suis bv. 4 str.
           40]
 gi|261221234|ref|ZP_05935515.1| DNA replication and repair protein recF [Brucella ceti B1/94]
 gi|261314777|ref|ZP_05953974.1| DNA replication and repair protein recF [Brucella pinnipedialis
           M163/99/10]
 gi|261316662|ref|ZP_05955859.1| DNA replication and repair protein recF [Brucella pinnipedialis
           B2/94]
 gi|261755892|ref|ZP_05999601.1| DNA replication and repair protein recF [Brucella suis bv. 3 str.
           686]
 gi|265987734|ref|ZP_06100291.1| DNA replication and repair protein recF [Brucella pinnipedialis
           M292/94/1]
 gi|265997195|ref|ZP_06109752.1| DNA replication and repair protein recF [Brucella ceti M490/95/1]
 gi|306843605|ref|ZP_07476206.1| DNA replication and repair protein RecF [Brucella sp. BO1]
 gi|38258604|sp|Q8G3E5|RECF_BRUSU RecName: Full=DNA replication and repair protein recF
 gi|23346772|gb|AAN28961.1| recF protein [Brucella suis 1330]
 gi|161334805|gb|ABX61110.1| DNA replication and repair protein RecF [Brucella canis ATCC 23365]
 gi|163673003|gb|ABY37114.1| DNA replication and repair protein RecF [Brucella suis ATCC 23445]
 gi|255998626|gb|ACU47025.1| recombination protein F [Brucella microti CCM 4915]
 gi|260156864|gb|EEW91944.1| DNA replication and repair protein recF [Brucella suis bv. 4 str.
           40]
 gi|260919818|gb|EEX86471.1| DNA replication and repair protein recF [Brucella ceti B1/94]
 gi|261295885|gb|EEX99381.1| DNA replication and repair protein recF [Brucella pinnipedialis
           B2/94]
 gi|261303803|gb|EEY07300.1| DNA replication and repair protein recF [Brucella pinnipedialis
           M163/99/10]
 gi|261745645|gb|EEY33571.1| DNA replication and repair protein recF [Brucella suis bv. 3 str.
           686]
 gi|262551663|gb|EEZ07653.1| DNA replication and repair protein recF [Brucella ceti M490/95/1]
 gi|264659931|gb|EEZ30192.1| DNA replication and repair protein recF [Brucella pinnipedialis
           M292/94/1]
 gi|306276296|gb|EFM57996.1| DNA replication and repair protein RecF [Brucella sp. BO1]
          Length = 384

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 231/371 (62%), Gaps = 2/371 (0%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            DV R  +   F+  A ++ M                  R ++IN +     D+L  + R
Sbjct: 71  DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|306842702|ref|ZP_07475345.1| DNA replication and repair protein RecF [Brucella sp. BO2]
 gi|306287148|gb|EFM58650.1| DNA replication and repair protein RecF [Brucella sp. BO2]
          Length = 384

 Score =  335 bits (859), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 231/371 (62%), Gaps = 2/371 (0%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            DV R  +   F+  A ++ M                  R ++IN +     D+L  + R
Sbjct: 71  DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRSLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|307276496|ref|ZP_07557616.1| recombination protein F [Enterococcus faecalis TX2134]
 gi|307287178|ref|ZP_07567249.1| recombination protein F [Enterococcus faecalis TX0109]
 gi|306501776|gb|EFM71067.1| recombination protein F [Enterococcus faecalis TX0109]
 gi|306506823|gb|EFM75973.1| recombination protein F [Enterococcus faecalis TX2134]
 gi|315165724|gb|EFU09741.1| recombination protein F [Enterococcus faecalis TX1302]
          Length = 375

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 167/376 (44%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +     A++ G+      ++ LE       R  ++N +  + +      L +  
Sbjct: 61  IGWEQAA-----AKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +       D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQTVLKQRNQYLKQLAEKKQTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q+AE G K+  AR+  +  L        QK +     L++        D   
Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTD 235

Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S  AL+ +  ++L + RK +     T +GPHR DL+     + +   +GS G+Q+   +
Sbjct: 236 LSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356
            I LA   L+ + TG  P+LLLD++ + LD +++  L   +     Q F+T T      D
Sbjct: 295 SIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDHIKD 353

Query: 357 SLNETAKFMRISNHQA 372
            L        +   + 
Sbjct: 354 KLTVEPDIFYVQQGKI 369


>gi|268318565|ref|YP_003292221.1| DNA replication and repair protein RecF [Lactobacillus johnsonii
           FI9785]
 gi|262396940|emb|CAX65954.1| DNA replication and repair protein RecF [Lactobacillus johnsonii
           FI9785]
          Length = 374

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 161/376 (42%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    + +FRN+  L++ FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++
Sbjct: 1   MYLANFELKDFRNFEELKINFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FA ++G    + + ++L+ R   + +   +N +  + +      +    
Sbjct: 61  IRFGSK-----FAGLQGKIHKSQLEVELKLRLTPNGKKAWVNRLEQKKLSAYVGQMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D 
Sbjct: 116 FSPEDLALVKGAPSTRRRFMDLEFGQINSEYLYFLSQYRQVLQQRNNYLKQLSIKKANDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
            +   +  Q+A +  +I   R++ I  L+S       + +    KL +      K    D
Sbjct: 176 VFLDVLSDQLAGIAAEIISRRIKYIKKLNSYAQSAHSEISGQAEKLQIFYRPSVKEITPD 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                + ++        R  +     TL GPHR DL     DK       S G+Q+ + +
Sbjct: 236 DDVETIYQKVITSYKKNRPNEIRKGTTLSGPHRDDLDFLINDKN-AHDFASQGQQRTISL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +L+   T   PILLLD++ + LD  ++++L   +    +Q F+T TD      
Sbjct: 295 SVKLAEIQLVHELTQEYPILLLDDVMSELDHRRQSSLLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  K   IS    
Sbjct: 354 EIVKEPKVYHISAGTI 369


>gi|331092115|ref|ZP_08340946.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402316|gb|EGG81887.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 361

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 164/372 (44%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  FRNY  L L FD+   I  GDN  GKTNILEAI      +  R     D+
Sbjct: 1   MIIKSLKLKNFRNYDLLNLDFDSATNILYGDNAQGKTNILEAIYLSGTTKSHRGTKDRDM 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   S   T    +G+E   DI +K       S + + IN + IR   EL   + + 
Sbjct: 61  IRFGQEESHIETVIEKKGIEFKTDIHLK-----KNSPKGIAINKMPIRKASELFGVIHLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRF+D  +  +D  +   + ++ R++  RN+LL + Y      
Sbjct: 116 FFSPEDLNIIKNGPAERRRFIDMELSQLDKVYLNDLANYNRIINQRNKLLKDIYGREDLI 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + QMA  G ++   R + I  ++ +I     K      KL+L            
Sbjct: 176 STLDIWDMQMAHYGDRVMQRRAKFIAQINGIIENVHGKLTGGKEKLNLFYEKSIGD---- 231

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                ++++ +   R+ D   + T +GPHR D+     D  I    GS G+Q+   + + 
Sbjct: 232 ----ADFSEAILKNRERDIRMKSTSVGPHRDDICFKAGDLDIR-KFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+       PILLLD++ + LD++++N L   +++I + +  TG D+ V      
Sbjct: 287 LSEIELVKLLINDTPILLLDDVLSELDKNRQNYLLDSISNIQTIVTCTGVDEFVNRRFLI 346

Query: 361 TAKFMRISNHQA 372
             K   ++  Q 
Sbjct: 347 N-KIFHVNGGQV 357


>gi|254718227|ref|ZP_05180038.1| recombination protein F [Brucella sp. 83/13]
 gi|265983183|ref|ZP_06095918.1| DNA replication and repair protein recF [Brucella sp. 83/13]
 gi|306839967|ref|ZP_07472761.1| DNA replication and repair protein RecF [Brucella sp. NF 2653]
 gi|264661775|gb|EEZ32036.1| DNA replication and repair protein recF [Brucella sp. 83/13]
 gi|306404931|gb|EFM61216.1| DNA replication and repair protein RecF [Brucella sp. NF 2653]
          Length = 384

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 232/371 (62%), Gaps = 2/371 (0%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            DV R  +   F+  A ++ M                  R ++IN +     D+L  + R
Sbjct: 71  DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D ++ RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRSLRDGRARDRVAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|116332685|ref|YP_794212.1| recombination protein F [Lactobacillus brevis ATCC 367]
 gi|122270619|sp|Q03UE1|RECF_LACBA RecName: Full=DNA replication and repair protein recF
 gi|116098032|gb|ABJ63181.1| DNA replication and repair protein RecF [Lactobacillus brevis ATCC
           367]
          Length = 384

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 160/376 (42%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRNY + +L F     + +G+N  GKTN+LEAI  L+  R  R A+  D+
Sbjct: 1   MYLQELQLQQFRNYPTAKLTFGQGINVLLGENAQGKTNLLEAIYVLALTRSHRTANDHDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               + +     A+V G    A  ++ LE    R  +  ++N +    + +    L +  
Sbjct: 61  VNWQAKT-----AKVSGRVVKAAGAVPLELTFSRQGKRARVNHLEQARLSQYVGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    I  G    RRRF+D     ++PR+   +  +  L++ RNR L     +   D 
Sbjct: 116 FAPEDLAIVKGAPTVRRRFMDMEFGQMNPRYLYNLSQYRTLLKQRNRYLKDLQHKQNKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            + S +  Q+A  G +I   R+ M+  L         + +    +L+         DQ  
Sbjct: 176 LFLSVLSDQLAAFGAEIIAQRLAMLQKLEHWAQAIHGEISQQREELTFHYATQVADDQLT 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +    +      +  +     TL+GPHR DL      K +    GS G+Q+   + 
Sbjct: 236 DVPTITAALSALYAKQQDKELYQGTTLVGPHRDDLHFQVNGKNV-QTFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+   TG  P+LLLD++ + LD+ ++  L   + D   Q F+T T  S     
Sbjct: 295 VKLAEIDLMKEETGEYPVLLLDDVLSELDDARQTHLLTAIQDK-VQTFITTTSLSGITRQ 353

Query: 358 LNETAKFMRISNHQAL 373
           L +      ++    +
Sbjct: 354 LIKDPTIFHVAEGTVV 369


>gi|229551100|ref|ZP_04439825.1| recombination protein F [Lactobacillus rhamnosus LMS2-1]
 gi|258538196|ref|YP_003172695.1| DNA replication and repair protein recF [Lactobacillus rhamnosus Lc
           705]
 gi|229315561|gb|EEN81534.1| recombination protein F [Lactobacillus rhamnosus LMS2-1]
 gi|257149872|emb|CAR88844.1| DNA replication and repair protein recF [Lactobacillus rhamnosus Lc
           705]
          Length = 372

 Score =  334 bits (858), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 155/373 (41%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNYA++   F  +  + +G+N  GKTN+LEAI  L+  R  R  +  ++
Sbjct: 1   MKLDHLTLKNYRNYATVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FARV G       + +LE       +  +I+ +    + +   H  +  
Sbjct: 61  IRFGSD-----FARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D     + P++   +  ++  ++ RN  L +       D 
Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
            +   +   +A  G ++  AR +++  +S       Q       KL       +     Q
Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAYQTQVTADLRQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + E         +  +     +L+GPHR D++    DK +    GS G+Q+   + 
Sbjct: 236 DSEQVYEALGALFAKQQSREIEQGTSLVGPHRDDVLFIVNDKDV-ANFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+ + TG  P+LLLD++ + LD  ++  L + +     Q F+T T        
Sbjct: 295 VKLAEIDLMKDQTGEYPVLLLDDVLSELDAIRQTHLLKAIQAK-VQTFLTTTSLDGIQKE 353

Query: 358 LNETAKFMRISNH 370
           +       ++ + 
Sbjct: 354 IITAPAIFQVQDG 366


>gi|225570328|ref|ZP_03779353.1| hypothetical protein CLOHYLEM_06425 [Clostridium hylemonae DSM
           15053]
 gi|225160860|gb|EEG73479.1| hypothetical protein CLOHYLEM_06425 [Clostridium hylemonae DSM
           15053]
          Length = 361

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 100/372 (26%), Positives = 166/372 (44%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK L +  FRNY  L+L FD    IF GDN  GKTNILE++      +  R     D+
Sbjct: 1   MKIKSLKLKSFRNYDFLKLEFDNATNIFYGDNAQGKTNILESVYLSGTTKSHRGTKDRDL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G   S   T     G+    D+ +K       S + + IN + IR   EL   + I 
Sbjct: 61  VQFGKEESHIETVVEKNGITYQIDMHLK-----KNSPKGIAINKIPIRKASELFGIINIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRF+D  +  +D  +   + ++ R++  RN LL +     +  
Sbjct: 116 FFSPEDLNIIKNGPSERRRFIDLELSQLDKVYLNNLSNYNRIVNQRNHLLKDITQQRNLM 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 E Q+ + G KI   R + +  ++ +I    +K      +++L       ++ S 
Sbjct: 176 ETLDVWEIQLIQYGNKIIERRKQFVKEINKIISNIHKKLTGEKEEINLI------YEPSV 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L   + + L   R+ D   + T +GPHR D+     D  I    GS G+Q+   + + 
Sbjct: 230 GNLT--FEQALAKNRERDMRIKSTSVGPHRDDICFMVGDLDIR-RFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+  +    P+LLLD++ + LD+ ++N L   + DI + I  TG D+ V    + 
Sbjct: 287 LSEIELVKQSIHDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVDEFVNHRFSI 346

Query: 361 TAKFMRISNHQA 372
             K   + + Q 
Sbjct: 347 N-KVFHVQDGQV 357


>gi|258506999|ref|YP_003169750.1| DNA replication and repair protein recF [Lactobacillus rhamnosus
           GG]
 gi|257146926|emb|CAR85899.1| DNA replication and repair protein recF [Lactobacillus rhamnosus
           GG]
 gi|259648369|dbj|BAI40531.1| recombination protein RecF [Lactobacillus rhamnosus GG]
          Length = 372

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 155/373 (41%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNYA++   F  +  + +G+N  GKTN+LEAI  L+  R  R  +  ++
Sbjct: 1   MKLDHLTLKNYRNYATVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FARV G       + +LE       +  +I+ +    + +   H  +  
Sbjct: 61  IRFGSD-----FARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D     + P++   +  ++  ++ RN  L +       D 
Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
            +   +   +A  G ++  AR +++  +S       Q       KL       +     Q
Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAYQTQVAADLRQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + E         +  +     +L+GPHR D++    DK +    GS G+Q+   + 
Sbjct: 236 DSEQVYEALGALFAKQQSREIEQGTSLVGPHRDDVLFIVNDKDV-ANFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+ + TG  P+LLLD++ + LD  ++  L + +     Q F+T T        
Sbjct: 295 VKLAEIDLMKDQTGEYPVLLLDDVLSELDAIRQTHLLKAIQAK-VQTFLTTTSLDGIQKE 353

Query: 358 LNETAKFMRISNH 370
           +       ++ + 
Sbjct: 354 IITAPAIFQVQDG 366


>gi|254700821|ref|ZP_05162649.1| recombination protein F [Brucella suis bv. 5 str. 513]
 gi|261751327|ref|ZP_05995036.1| DNA replication and repair protein recF [Brucella suis bv. 5 str.
           513]
 gi|261741080|gb|EEY29006.1| DNA replication and repair protein recF [Brucella suis bv. 5 str.
           513]
          Length = 384

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 230/371 (61%), Gaps = 2/371 (0%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            DV R  +   F+  A ++ M                  R ++IN +     D+L  + R
Sbjct: 71  DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFIGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|29374665|ref|NP_813817.1| recombination protein F [Enterococcus faecalis V583]
 gi|227518105|ref|ZP_03948154.1| recombination protein F [Enterococcus faecalis TX0104]
 gi|227555688|ref|ZP_03985735.1| recombination protein F [Enterococcus faecalis HH22]
 gi|229547126|ref|ZP_04435851.1| recombination protein F [Enterococcus faecalis TX1322]
 gi|229550696|ref|ZP_04439421.1| recombination protein F [Enterococcus faecalis ATCC 29200]
 gi|255971552|ref|ZP_05422138.1| DNA replication and repair protein recF [Enterococcus faecalis T1]
 gi|255974525|ref|ZP_05425111.1| DNA replication and repair protein recF [Enterococcus faecalis T2]
 gi|256618524|ref|ZP_05475370.1| RecF protein [Enterococcus faecalis ATCC 4200]
 gi|256761857|ref|ZP_05502437.1| DNA replication and repair protein recF [Enterococcus faecalis T3]
 gi|256854984|ref|ZP_05560345.1| recombination protein F [Enterococcus faecalis T8]
 gi|256960821|ref|ZP_05564992.1| RecF protein [Enterococcus faecalis Merz96]
 gi|256963986|ref|ZP_05568157.1| RecF protein [Enterococcus faecalis HIP11704]
 gi|257078689|ref|ZP_05573050.1| RecF protein [Enterococcus faecalis JH1]
 gi|257081350|ref|ZP_05575711.1| recombination protein F [Enterococcus faecalis E1Sol]
 gi|257084007|ref|ZP_05578368.1| recombination protein F [Enterococcus faecalis Fly1]
 gi|257087837|ref|ZP_05582198.1| RecF protein [Enterococcus faecalis D6]
 gi|257088489|ref|ZP_05582850.1| recombination protein recF [Enterococcus faecalis CH188]
 gi|257418839|ref|ZP_05595833.1| recombination protein F recF [Enterococcus faecalis T11]
 gi|257421346|ref|ZP_05598336.1| recombination protein F [Enterococcus faecalis X98]
 gi|293382659|ref|ZP_06628587.1| DNA replication and repair protein RecF [Enterococcus faecalis
           R712]
 gi|293387929|ref|ZP_06632465.1| DNA replication and repair protein RecF [Enterococcus faecalis
           S613]
 gi|294781252|ref|ZP_06746599.1| DNA replication and repair protein RecF [Enterococcus faecalis
           PC1.1]
 gi|300861825|ref|ZP_07107905.1| DNA replication and repair protein RecF [Enterococcus faecalis
           TUSoD Ef11]
 gi|307268920|ref|ZP_07550284.1| recombination protein F [Enterococcus faecalis TX4248]
 gi|307274015|ref|ZP_07555225.1| recombination protein F [Enterococcus faecalis TX0855]
 gi|307284062|ref|ZP_07564232.1| recombination protein F [Enterococcus faecalis TX0860]
 gi|307296593|ref|ZP_07576413.1| recombination protein F [Enterococcus faecalis TX0411]
 gi|312901293|ref|ZP_07760576.1| recombination protein F [Enterococcus faecalis TX0470]
 gi|312903110|ref|ZP_07762291.1| recombination protein F [Enterococcus faecalis TX0635]
 gi|312908811|ref|ZP_07767750.1| recombination protein F [Enterococcus faecalis DAPTO 512]
 gi|312951717|ref|ZP_07770611.1| recombination protein F [Enterococcus faecalis TX0102]
 gi|312979547|ref|ZP_07791229.1| recombination protein F [Enterococcus faecalis DAPTO 516]
 gi|51316408|sp|Q839Z2|RECF_ENTFA RecName: Full=DNA replication and repair protein recF
 gi|29342123|gb|AAO79889.1| DNA replication and repair protein RecF [Enterococcus faecalis
           V583]
 gi|227074439|gb|EEI12402.1| recombination protein F [Enterococcus faecalis TX0104]
 gi|227175198|gb|EEI56170.1| recombination protein F [Enterococcus faecalis HH22]
 gi|229304129|gb|EEN70125.1| recombination protein F [Enterococcus faecalis ATCC 29200]
 gi|229307708|gb|EEN73695.1| recombination protein F [Enterococcus faecalis TX1322]
 gi|255962570|gb|EET95046.1| DNA replication and repair protein recF [Enterococcus faecalis T1]
 gi|255967397|gb|EET98019.1| DNA replication and repair protein recF [Enterococcus faecalis T2]
 gi|256598051|gb|EEU17227.1| RecF protein [Enterococcus faecalis ATCC 4200]
 gi|256683108|gb|EEU22803.1| DNA replication and repair protein recF [Enterococcus faecalis T3]
 gi|256709497|gb|EEU24544.1| recombination protein F [Enterococcus faecalis T8]
 gi|256951317|gb|EEU67949.1| RecF protein [Enterococcus faecalis Merz96]
 gi|256954482|gb|EEU71114.1| RecF protein [Enterococcus faecalis HIP11704]
 gi|256986719|gb|EEU74021.1| RecF protein [Enterococcus faecalis JH1]
 gi|256989380|gb|EEU76682.1| recombination protein F [Enterococcus faecalis E1Sol]
 gi|256992037|gb|EEU79339.1| recombination protein F [Enterococcus faecalis Fly1]
 gi|256995867|gb|EEU83169.1| RecF protein [Enterococcus faecalis D6]
 gi|256997301|gb|EEU83821.1| recombination protein recF [Enterococcus faecalis CH188]
 gi|257160667|gb|EEU90627.1| recombination protein F recF [Enterococcus faecalis T11]
 gi|257163170|gb|EEU93130.1| recombination protein F [Enterococcus faecalis X98]
 gi|291079965|gb|EFE17329.1| DNA replication and repair protein RecF [Enterococcus faecalis
           R712]
 gi|291082666|gb|EFE19629.1| DNA replication and repair protein RecF [Enterococcus faecalis
           S613]
 gi|294451715|gb|EFG20170.1| DNA replication and repair protein RecF [Enterococcus faecalis
           PC1.1]
 gi|295112343|emb|CBL30980.1| DNA replication and repair protein RecF [Enterococcus sp. 7L76]
 gi|300848350|gb|EFK76107.1| DNA replication and repair protein RecF [Enterococcus faecalis
           TUSoD Ef11]
 gi|306495929|gb|EFM65517.1| recombination protein F [Enterococcus faecalis TX0411]
 gi|306503433|gb|EFM72682.1| recombination protein F [Enterococcus faecalis TX0860]
 gi|306509323|gb|EFM78383.1| recombination protein F [Enterococcus faecalis TX0855]
 gi|306514728|gb|EFM83279.1| recombination protein F [Enterococcus faecalis TX4248]
 gi|310625249|gb|EFQ08532.1| recombination protein F [Enterococcus faecalis DAPTO 512]
 gi|310630290|gb|EFQ13573.1| recombination protein F [Enterococcus faecalis TX0102]
 gi|310633501|gb|EFQ16784.1| recombination protein F [Enterococcus faecalis TX0635]
 gi|311287729|gb|EFQ66285.1| recombination protein F [Enterococcus faecalis DAPTO 516]
 gi|311291670|gb|EFQ70226.1| recombination protein F [Enterococcus faecalis TX0470]
 gi|315026674|gb|EFT38606.1| recombination protein F [Enterococcus faecalis TX2137]
 gi|315030119|gb|EFT42051.1| recombination protein F [Enterococcus faecalis TX4000]
 gi|315033553|gb|EFT45485.1| recombination protein F [Enterococcus faecalis TX0017]
 gi|315143592|gb|EFT87608.1| recombination protein F [Enterococcus faecalis TX2141]
 gi|315148270|gb|EFT92286.1| recombination protein F [Enterococcus faecalis TX4244]
 gi|315151294|gb|EFT95310.1| recombination protein F [Enterococcus faecalis TX0012]
 gi|315153720|gb|EFT97736.1| recombination protein F [Enterococcus faecalis TX0031]
 gi|315155120|gb|EFT99136.1| recombination protein F [Enterococcus faecalis TX0043]
 gi|315158750|gb|EFU02767.1| recombination protein F [Enterococcus faecalis TX0312]
 gi|315163334|gb|EFU07351.1| recombination protein F [Enterococcus faecalis TX0645]
 gi|315168223|gb|EFU12240.1| recombination protein F [Enterococcus faecalis TX1341]
 gi|315573988|gb|EFU86179.1| recombination protein F [Enterococcus faecalis TX0309B]
 gi|315578842|gb|EFU91033.1| recombination protein F [Enterococcus faecalis TX0630]
 gi|315581939|gb|EFU94130.1| recombination protein F [Enterococcus faecalis TX0309A]
 gi|323479243|gb|ADX78682.1| DNA replication and repair protein recF [Enterococcus faecalis 62]
 gi|327533857|gb|AEA92691.1| recombination protein F [Enterococcus faecalis OG1RF]
          Length = 375

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 167/376 (44%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +     A++ G+      ++ LE       R  ++N +  + +      L +  
Sbjct: 61  IGWEQAA-----AKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +       D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q+AE G K+  AR+  +  L        QK +     L++        D   
Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTD 235

Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S  AL+ +  ++L + RK +     T +GPHR DL+     + +   +GS G+Q+   +
Sbjct: 236 LSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356
            I LA   L+ + TG  P+LLLD++ + LD +++  L   +     Q F+T T      D
Sbjct: 295 SIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDHIKD 353

Query: 357 SLNETAKFMRISNHQA 372
            L        +   + 
Sbjct: 354 KLTVEPDIFYVQQGKI 369


>gi|220927463|ref|YP_002504372.1| DNA replication and repair protein RecF [Clostridium cellulolyticum
           H10]
 gi|254790470|sp|B8I3R5|RECF_CLOCE RecName: Full=DNA replication and repair protein recF
 gi|219997791|gb|ACL74392.1| DNA replication and repair protein RecF [Clostridium cellulolyticum
           H10]
          Length = 372

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 96/374 (25%), Positives = 171/374 (45%), Gaps = 12/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  +RN+ + R++F  +  IF GDNG GKTNILEAI   + GR  R +  +++
Sbjct: 1   MIVKNLVLENYRNHTNTRILFSDRFNIFYGDNGQGKTNILEAIYLCASGRSHRTSRDSEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +F S    V    GL D  I++    +   + ++IND+ I+ +  L  +L    
Sbjct: 61  IKFGCENF-SIAVHVSKTGGL-DKDIEISYY-ENQKKQIKINDIPIKKIGALMGNLYAVL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC- 183
             P    I      ERRRF+D  +  I P +   +    ++++ RN LL     +     
Sbjct: 118 FSPEDLFIVKQGPTERRRFVDITLSQIKPSYFYNLQQMSKILKQRNTLLKNISSNPKLMD 177

Query: 184 --SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQS 239
                  ++AE+   I  AR      LS +             K+S              
Sbjct: 178 TVDIWNMRLAEVAAAIIKARRTFSIMLSGMAENQHNFLTGKSEKISFDYRCSFQISGQDD 237

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +++ Y  +L    + D +   T +GPHR D  +   DK++ + +GS G+Q+  ++ +
Sbjct: 238 TEQIEKLYLVQLEKSMQRDIVLGYTTVGPHRDDYDIMINDKSLKL-YGSQGQQRSAVLSL 296

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358
            +A   L+   T   P+LLLD++ + LD++++  L   + +   Q F+T T+K  F + L
Sbjct: 297 KIAEIELVKKATNQYPVLLLDDVMSELDKNRQKYLMDSIKE--VQTFITCTNKEHFGNLL 354

Query: 359 NETAKFMRISNHQA 372
           +  + F +I     
Sbjct: 355 SANSNFFKIVGGNI 368


>gi|114704369|ref|ZP_01437277.1| DNA replication and repair protein [Fulvimarina pelagi HTCC2506]
 gi|114539154|gb|EAU42274.1| DNA replication and repair protein [Fulvimarina pelagi HTCC2506]
          Length = 385

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 167/375 (44%), Positives = 234/375 (62%), Gaps = 4/375 (1%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  + +I  L + +FRNY  L L F  +  +F G NG GKTN+LEA+S LSPGRG RRA 
Sbjct: 6   MGRQSEIGHLRLFDFRNYELLDLSFQKRFVVFAGPNGAGKTNLLEALSLLSPGRGLRRAP 65

Query: 61  YADVTRIGSPSFFSTFA--RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           Y ++ R G+ S FS  A  R+   E     S++L+     S R ++I++   +  +EL  
Sbjct: 66  YGEMARQGTQSGFSVKASVRIASEETTVVTSVRLDGEGPNS-RLVRIDETQAKSAEELLD 124

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
             RI WL P+MD +F+G + +RRRFLDRMV +IDP H RR  DFER MR RN+LL++   
Sbjct: 125 IARIVWLTPAMDGLFTGPAGDRRRFLDRMVLSIDPTHGRRASDFERAMRSRNKLLSDNRI 184

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFD 237
           D  W + IE QMAELGV + +AR E++  L++ I        FP   L L+ GF +G  D
Sbjct: 185 DDRWLAGIEMQMAELGVAMAVARNELVANLTNAIALADPDLPFPKAGLVLSPGFEEGGLD 244

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                +++ Y ++L   R  D+ + RTL GPHR+DL V +  K +     STGEQK +LV
Sbjct: 245 GPAVQVEDRYRERLARDRYRDAGAGRTLEGPHRADLEVTHLAKHMPAGLSSTGEQKALLV 304

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           G+ +AHARL S  +G APILLLDEI+AHLD  +R +LF +V D+G Q FMTGTD+S+F++
Sbjct: 305 GLIIAHARLTSVLSGMAPILLLDEIAAHLDARRRASLFDLVGDLGGQTFMTGTDESLFEA 364

Query: 358 LNETAKFMRISNHQA 372
           L + A+ + I++   
Sbjct: 365 LGDRAQIITIADGAV 379


>gi|256957012|ref|ZP_05561183.1| RecF protein [Enterococcus faecalis DS5]
 gi|256947508|gb|EEU64140.1| RecF protein [Enterococcus faecalis DS5]
 gi|315036376|gb|EFT48308.1| recombination protein F [Enterococcus faecalis TX0027]
          Length = 375

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 167/376 (44%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +     A++ G+      ++ LE       R  ++N +  + +      L +  
Sbjct: 61  IGWEQAA-----AKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +       D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+AE G K+  AR+  +  L        QK +     L++        D + 
Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTD 235

Query: 241 CALK---EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +L+    +  ++L + RK +     T +GPHR DL+     + +   +GS G+Q+   +
Sbjct: 236 LSLETLQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356
            I LA   L+ + TG  P+LLLD++ + LD +++  L   +     Q F+T T      D
Sbjct: 295 SIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDHIKD 353

Query: 357 SLNETAKFMRISNHQA 372
            L        +   + 
Sbjct: 354 KLTVEPDIFYVQQGKI 369


>gi|257417429|ref|ZP_05594423.1| RecF protein [Enterococcus faecalis AR01/DG]
 gi|257159257|gb|EEU89217.1| RecF protein [Enterococcus faecalis ARO1/DG]
          Length = 375

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 167/376 (44%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +     A++ G+      ++ LE       R  ++N +  + +      L +  
Sbjct: 61  IGWEQAT-----AKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +       D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q+AE G K+  AR+  +  L        QK +     L++        D   
Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTD 235

Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S  AL+ +  ++L + RK +     T +GPHR DL+     + +   +GS G+Q+   +
Sbjct: 236 LSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356
            I LA   L+ + TG  P+LLLD++ + LD +++  L   +     Q F+T T      D
Sbjct: 295 SIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDHIKD 353

Query: 357 SLNETAKFMRISNHQA 372
            L        +   + 
Sbjct: 354 KLTVEPDIFYVQQGKI 369


>gi|315650189|ref|ZP_07903264.1| recombination protein F [Eubacterium saburreum DSM 3986]
 gi|315487546|gb|EFU77854.1| recombination protein F [Eubacterium saburreum DSM 3986]
          Length = 363

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 165/370 (44%), Gaps = 19/370 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L + ++RNY +L +       IF GDN  GKTNILE+I   +  +  R +   D+
Sbjct: 1   MIIESLELKDYRNYENLNIKLSTGVNIFYGDNAQGKTNILESIYLATTSKSHRGSKDKDI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            R G+       + ++ M    D S++++    +   + + IN + IR + EL     + 
Sbjct: 61  IRFGAGE-----SHIKLMIKRMDASVRMDMHIKKNKAKGVAINGIPIRKLSELFGTCNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---S 180
           +  P    I      ERR F+D  +  ++  +   ++ + +++  RN+LL E  F     
Sbjct: 116 FFSPEDLNIIKRSPKERRNFVDMELCQLNKVYVSTLVTYNKVLEQRNKLLKEIGFKTGLE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ + G  +   R E +  L+ +I +   +      K+ +    + +     
Sbjct: 176 DTLDIWDMQLIKYGTDLISYREEFVKKLNEVIFDIHSRLTGGE-KIKVIYEKNIE----- 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              K+ +  +L   R  D   + T +GPHR D      ++      GS G+Q+ + + + 
Sbjct: 230 ---KDNFEAELRKSRTNDIKYKTTNVGPHRDDFSFFLNNEMDLKKFGSQGQQRSLALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   LI    G  P+LLLD++ + LD  +++ L   +  I + I  TG +  +  SL +
Sbjct: 287 LSEIELIKVRYGEFPVLLLDDVLSELDGKRQSHLLESIRHIQTLITCTGVEDFLNKSL-D 345

Query: 361 TAKFMRISNH 370
             K   ++N 
Sbjct: 346 IGKVFNVTNG 355


>gi|154483926|ref|ZP_02026374.1| hypothetical protein EUBVEN_01632 [Eubacterium ventriosum ATCC
           27560]
 gi|149735417|gb|EDM51303.1| hypothetical protein EUBVEN_01632 [Eubacterium ventriosum ATCC
           27560]
          Length = 362

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 169/372 (45%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + +S FRNY SL L  D +  I  G N  GKTN+LEAI   S  +  R +  A++
Sbjct: 1   MIVTKIELSNFRNYDSLSLELDDKTNILYGKNAQGKTNVLEAIYLCSTTKSHRSSKDAEL 60

Query: 65  TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   +      F   +G E   DI ++         + + IN + I+   EL     + 
Sbjct: 61  IKFENNEGHIKLFINKKGREYRIDIHLR-----KNKSKGIAINGIPIKKASELFGIFNVI 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRF+D  +  +D  +   +I++ +++  RN+LL + Y      
Sbjct: 116 FFSPEDLDIIKNGPAERRRFVDMELCQLDKIYVYNLINYNKVLGQRNQLLKDIYMKPELE 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+AE G K+   R + I  ++ +I    +K      ++ +        D   
Sbjct: 176 DTLDVWDMQLAEYGSKVIKRREQFIKDINKIIKPIHRKLTENSEEIEVVYKKSCNED--- 232

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                E   K+ + RK D   + T  GPHR D++    D  I   +GS G+++ V + + 
Sbjct: 233 -----ELYNKIIENRKKDIKLKSTSAGPHRDDILFFNKDINIR-TYGSQGQKRTVALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L+ +     P+LLLD++ + LD D++N L + + +I + I  TG D+ + +  + 
Sbjct: 287 LAEIELVKSLINDTPVLLLDDVLSELDSDRQNHLLKSLDEIQTVITCTGLDEFIENRFSI 346

Query: 361 TAKFMRISNHQA 372
             K  +++  + 
Sbjct: 347 N-KVFQVTKGKI 357


>gi|316931399|ref|YP_004106381.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           DX-1]
 gi|315599113|gb|ADU41648.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           DX-1]
          Length = 394

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 144/371 (38%), Positives = 203/371 (54%), Gaps = 4/371 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNY S  L   A   + VG NG GKTN LEA+S LSPGRG RRA   D+ 
Sbjct: 20  RITRLTLTHFRNYRSASLTTTADQVVLVGPNGAGKTNCLEAVSLLSPGRGLRRARLEDIA 79

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++  A VEG  GLA +   +E    D  + R  +I+   +        HLR+ 
Sbjct: 80  GHEGDGSWAVSAEVEGALGLATLGTGIEPPRGDVATTRRCRIDREPVGSAAAFGDHLRMV 139

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182
           WL PSMD +F G + ERRRF DR+V AID  H  R+   +R +R RNRLL +    DS W
Sbjct: 140 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDIRNADSHW 199

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             +IE + AEL + +   R +    L+++I        FP  ++ L G+++         
Sbjct: 200 LDAIERETAELAIAVAAQRGQTATKLAAMIDARGATSAFPSARIMLDGWMESALASEPAT 259

Query: 243 LKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           + E+ Y   L D R  D+ + RTL GPH +DL V Y  KA+     STGEQK +L+G+ L
Sbjct: 260 VVEDRYRAVLRDNRSRDAAAGRTLDGPHLTDLEVIYAPKAMPAREASTGEQKALLIGLVL 319

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHA+L++ TT   P+LLLDE+ AHLD  +R ALF  ++ +G+Q++MTG D   F  +   
Sbjct: 320 AHAQLVAETTSITPLLLLDEVVAHLDPGRRAALFGELSRLGAQVWMTGADPLAFAEIGPA 379

Query: 362 AKFMRISNHQA 372
           A    + N + 
Sbjct: 380 AAIFDVDNGRI 390


>gi|229826861|ref|ZP_04452930.1| hypothetical protein GCWU000182_02245 [Abiotrophia defectiva ATCC
           49176]
 gi|229788479|gb|EEP24593.1| hypothetical protein GCWU000182_02245 [Abiotrophia defectiva ATCC
           49176]
          Length = 364

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 169/373 (45%), Gaps = 21/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK L +++FRN  ++ + FD    I  GDN  GKTNILE+I      R  + +   ++
Sbjct: 1   MRIKSLALNDFRNIENISIEFDKGLNIIYGDNAQGKTNILESIYVAGTTRSHKGSKDKEM 60

Query: 65  TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            ++G            + ++   D+ +K         + + ++ + +    ++   +++ 
Sbjct: 61  IKLGEDEAHIRIILEKDDLDRKIDMHLK-----KSKSKGVAVDGIPVHKSADIFGIVQLI 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    +      ERRRF+D  +  I+  +   +  + +++  RN LL +  +D+   
Sbjct: 116 FFSPEDLSMIKDGPAERRRFIDMELSQIEKIYLYNLSKYNKILTQRNNLLKQISYDTGLS 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+   G++I  +R + I+ L+ +I    +K      +L +          + 
Sbjct: 176 DTLDVWDEQLVSTGLEIIKSRRKFISELNEIIKPIHEKLTGGKEELEIEY--------NP 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              +E++  KL  GR  D   + TL GP R D+   Y +K     +GS G+Q+   + + 
Sbjct: 228 NVTEEDFKDKLKSGRNSDIYQKTTLTGPQRDDITF-YINKNDVRKYGSQGQQRSTALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359
           L+   L    TG  PILLLD++ + LD  ++N L   + DI  Q  +T T    F ++  
Sbjct: 287 LSEIELFKKKTGDNPILLLDDVLSELDRSRQNYLIESIGDI--QTIITCTGLEEFVENKK 344

Query: 360 ETAKFMRISNHQA 372
              +  +I++ + 
Sbjct: 345 ADGRIYKINSGKI 357


>gi|293553550|ref|ZP_06674177.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1039]
 gi|291602305|gb|EFF32530.1| DNA replication and repair protein RecF [Enterococcus faecium
           E1039]
          Length = 374

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 14/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY  L   F     IF+G+N  GKTN+LE+I  L+  R  R +S  ++
Sbjct: 1   MRLNKLYLKNYRNYEELNTEFSKNLVIFLGENAQGKTNLLESIYVLAMTRSHRTSSEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  +    A ++G       ++ LE    +  R  +IN +  + +      + +  
Sbjct: 61  I-----GWTDDQAMIQGEITKGSSTLPLEILLSKKGRKTKINHIEQKKLSTYVGQMNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  I+P +   ++ ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPQIRRKFLDMELGQINPIYLYDLVQYQAILKQRNQYLKQLNEKKQTDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQ 238
            +   +  Q+A  G K+  AR + +  L        Q+       +++     +D     
Sbjct: 176 LYLDILSEQLAAFGSKVLKARAQFVKRLEFWANSLHQQITHQKEQLEIEYLTAVDSLETH 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   ++E++   L   +K D     T +GPHR DL      K +   +GS G+Q+   + 
Sbjct: 236 TQEQIQEQFLALLNQNKKKDLFRGTTTVGPHRDDLSFFINQKNV-QTYGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   LI   TG  PILLLD++ + LD+ ++  L   +     Q F+T T      + 
Sbjct: 295 VKLAEIDLIKEETGEYPILLLDDVMSELDDSRQLHLLETIEGK-VQTFLTTTTLDHVKNK 353

Query: 358 LNETAKFMRISNHQ 371
           +    +   +   +
Sbjct: 354 MTVEPEIFYVQQGK 367


>gi|153854252|ref|ZP_01995551.1| hypothetical protein DORLON_01545 [Dorea longicatena DSM 13814]
 gi|149753027|gb|EDM62958.1| hypothetical protein DORLON_01545 [Dorea longicatena DSM 13814]
          Length = 374

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 21/376 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + +K+  L +  FRNY  L + FD    IF G+N  GKTNILEA+      +  R +   
Sbjct: 10  SELKVNSLKLKNFRNYDLLNVEFDGSTNIFYGNNAQGKTNILEAVYLSGTTKSHRGSKDR 69

Query: 63  DVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           D+ R G   S   T     G+    D+ +K       S + + IN + IR   EL   + 
Sbjct: 70  DMIRFGEDESHIETVVEKNGISYQIDMHLK-----KNSPKGIAINKMPIRKASELFGIVN 124

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GY 177
           + +  P    I      ERRRF+D  +  +D  +   + ++ R++  RN LL E    G 
Sbjct: 125 LVFFSPEDLNIIKNGPAERRRFIDLELSQLDKVYLNNLSNYNRIVNQRNHLLKELSFGGK 184

Query: 178 FD-SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
            D S      E QM + G ++   R E +  ++ +I +  Q+       L +       +
Sbjct: 185 KDLSDTLEIWELQMVQYGERLIARRKEFVEQINGIIAKIHQRLTGGKESLKII------Y 238

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           + S   L   + + L   R+ D   + T +GPHR D+     D  I   +GS G+Q+   
Sbjct: 239 EPSTGDLP--FEQALNRYRERDLRMKSTTVGPHRDDIGFLIGDMDIR-KYGSQGQQRTAA 295

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + L+   L+   T   PILLLD++ + LD+ ++N L   + DI + I  TG +  V  
Sbjct: 296 LSLKLSEIELVKLATHDTPILLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVEDFVNH 355

Query: 357 SLNETAKFMRISNHQA 372
             +   K   + N Q 
Sbjct: 356 RFSIN-KVFHVQNGQV 370


>gi|39933083|ref|NP_945359.1| recombination protein F [Rhodopseudomonas palustris CGA009]
 gi|39652708|emb|CAE25447.1| putative RecF protein [Rhodopseudomonas palustris CGA009]
          Length = 388

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 146/371 (39%), Positives = 204/371 (54%), Gaps = 4/371 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNY    L   A   + VG NG GKTN LEAISFLSPGRG RRA+  DV 
Sbjct: 14  RITRLTLTHFRNYRGASLTTTADQVVLVGPNGAGKTNCLEAISFLSPGRGLRRATLEDVA 73

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++    +EG  GLA +   +E    D  + R  +I+   +        HLR+ 
Sbjct: 74  NHEGDGSWAVSTEIEGALGLATLGTGIEPPRGDTTTTRRCRIDREPVGSAAAFGDHLRMV 133

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182
           WL PSMD +F G + ERRRF DR+V AID  H  R+   +R +R RNRLL +    DS W
Sbjct: 134 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDVRNADSHW 193

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
             +IE + AEL + +   R +    L++++        FP  KL L G+++     +   
Sbjct: 194 LDAIERETAELAIAVAAQRGQTALKLAAMLDARGATSAFPSAKLMLDGWMENALTSEPAT 253

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+++ Y   L D R  D+ + RTL GPH +DL V Y  KA+     STGEQK +L+G+ L
Sbjct: 254 AVEDRYRAILRDSRGRDAAAGRTLDGPHLTDLEVIYAPKAMPARDASTGEQKALLIGLVL 313

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHA+L++ TT   P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D   F  +   
Sbjct: 314 AHAQLVAETTSITPLLLLDEVVAHLDPGRREALFTELGKLGAQVWMTGADPMAFAEIGPA 373

Query: 362 AKFMRISNHQA 372
           A    + N Q 
Sbjct: 374 AGIFDVENGQI 384


>gi|199598230|ref|ZP_03211651.1| Recombinational DNA repair ATPase (RecF pathway) [Lactobacillus
           rhamnosus HN001]
 gi|199590833|gb|EDY98918.1| Recombinational DNA repair ATPase (RecF pathway) [Lactobacillus
           rhamnosus HN001]
          Length = 372

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 155/373 (41%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L++  +RNYA +   F  +  + +G+N  GKTN+LEAI  L+  R  R  +  ++
Sbjct: 1   MKLDHLSLKNYRNYAMVDTAFSPEINVLIGENAQGKTNLLEAIYVLALARSHRTNNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FARV G       + +LE       +  +I+ +    + +   H  +  
Sbjct: 61  IRFGSD-----FARVSGQISRQSGTHQLELIISHQGKRARIDRIEQSKLSQYLGHFNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D     + P++   +  ++  ++ RN  L +       D 
Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
            +   +   +A  G ++  AR +++  +S       Q       KL       +     Q
Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLQTMSDYAAAIQQDITKGREKLQFAYQTQVAADLRQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               + E         +  +     +L+GPHR D++    DK +    GS G+Q+   + 
Sbjct: 236 DSEQVYEALGALFAKQQSREIEQGTSLVGPHRDDVLFIVNDKDV-ANFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+ + TG  P+LLLD++ + LD  ++  L + +     Q F+T T        
Sbjct: 295 VKLAEIDLMKDQTGEYPVLLLDDVLSELDAIRQTHLLKAIQAK-VQTFLTTTSLDGIQKE 353

Query: 358 LNETAKFMRISNH 370
           +       ++ + 
Sbjct: 354 IITAPAIFQVQDG 366


>gi|226309591|ref|YP_002769485.1| DNA replication and repair protein F [Brevibacillus brevis NBRC
           100599]
 gi|254790466|sp|C0ZH40|RECF_BREBN RecName: Full=DNA replication and repair protein recF
 gi|226092539|dbj|BAH40981.1| DNA replication and repair protein F [Brevibacillus brevis NBRC
           100599]
          Length = 372

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 161/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L+++ +RNY ++ L FD    +F+G+N  GKTN LE+I  L+  +  R     ++
Sbjct: 1   MFLKNLSLTNYRNYETMSLSFDGPIQLFIGNNAQGKTNALESIYVLALAKSHRTPRDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +      +A +         S++LE +     +  +IN +  + +      L +  
Sbjct: 61  ISWDAD-----YATIRSDVLRRYGSVRLELQLTTKGKRAKINGMEQQKLSAYVGALNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P    I  G   +RRRF+D  +  + P +   + ++ +++  RN+LL +     S   
Sbjct: 116 FAPEDLSIVKGAPAQRRRFIDMEIGQVSPTYLYYLSNYNKVLAQRNQLLKDLAMKKSNSL 175

Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
              +    Q+A+L VK+   R E I  L +   E          +LSL          + 
Sbjct: 176 EMLAIWNTQLADLAVKLLRKRFEFIRKLETWAQEIHTGITDGRERLSLHYVNSSPVTEEM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +     ++      + R  + M   TLIGPHR D  +   +  +   +GS G+Q+   + 
Sbjct: 236 TIDQAVDKMLAAYEEVRDREIMRGSTLIGPHRDDFSLKVNNMDV-QTYGSQGQQRTSALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357
           I LA   LI    G  P+LLLD++ + LDE ++  L   + D   Q F++ T        
Sbjct: 295 IKLAEIELIKEEVGEYPVLLLDDVLSELDEHRQTLLLETIQD-RVQTFVSTTGVEGLKHQ 353

Query: 358 LNETAKFMRISNHQA 372
           + + A    +   + 
Sbjct: 354 VLQQASRFYVREGKI 368


>gi|254694809|ref|ZP_05156637.1| recombination protein F [Brucella abortus bv. 3 str. Tulya]
 gi|261215134|ref|ZP_05929415.1| DNA replication and repair protein recF [Brucella abortus bv. 3
           str. Tulya]
 gi|260916741|gb|EEX83602.1| DNA replication and repair protein recF [Brucella abortus bv. 3
           str. Tulya]
          Length = 384

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 166/371 (44%), Positives = 231/371 (62%), Gaps = 2/371 (0%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            DV R  +   FS  A ++ M                  R ++IN +     D+L  + R
Sbjct: 71  DDVARANAEGGFSIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINRIAA-SADDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|304392439|ref|ZP_07374380.1| DNA replication and repair protein RecF [Ahrensia sp. R2A130]
 gi|303295543|gb|EFL89902.1| DNA replication and repair protein RecF [Ahrensia sp. R2A130]
          Length = 391

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 159/378 (42%), Positives = 220/378 (58%), Gaps = 11/378 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRNY +LRL+ D +H +  G+NG GKTN+LEAISFLSPGRG RR SY  V
Sbjct: 11  VAITTLKLDHFRNYDTLRLLCDHRHVVLTGENGSGKTNLLEAISFLSPGRGLRRTSYDQV 70

Query: 65  TRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDR--SVRCLQINDVVIRVVDELN 117
            +           ++  A +E   G   I   L+   +     R + IN    R  ++L 
Sbjct: 71  AKADGSDSPRSGTWAVHAELETPAGELTIGTGLQRGPNGVDGQRRISINGAPKRTSEDLL 130

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           + LR+ WLVP+MD +F+G + +RRRFLDRMV AIDP H RR+ D+ER MR RN+LL E  
Sbjct: 131 ERLRVVWLVPAMDGLFTGAASDRRRFLDRMVLAIDPGHGRRVNDYERAMRSRNKLLDENR 190

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            D SW   IEAQ+AE G  I  AR E++  LS           FP  +L L G L+ +  
Sbjct: 191 IDDSWLGGIEAQLAEQGTAIAFARSELVGLLSDHAAPENAS-PFPTARLLLEGALEEEIA 249

Query: 238 Q---SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           +   S   +++ +  +L   R  D  + RTL GPHRS+L V +  K +  A  STGEQK 
Sbjct: 250 RGEGSAADVEDSFRDRLSANRYRDRAAGRTLEGPHRSNLAVIHAPKNMAAALCSTGEQKA 309

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           +L G+ LAHA+L++  TG  P+LLLDE +AHLD  +R ALF ++  IG Q +MTGTD  +
Sbjct: 310 LLTGLVLAHAKLVAKLTGIPPVLLLDECAAHLDAQRRAALFDLIDTIGCQAWMTGTDAPL 369

Query: 355 FDSLNETAKFMRISNHQA 372
           F++L + A++  +     
Sbjct: 370 FEALGDRAQYFTVHEGTV 387


>gi|315286765|ref|ZP_07872179.1| DNA replication and repair protein RecF [Listeria ivanovii FSL
           F6-596]
 gi|313630894|gb|EFR98586.1| DNA replication and repair protein RecF [Listeria ivanovii FSL
           F6-596]
          Length = 372

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 159/377 (42%), Gaps = 13/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEAI  L+  +  R  +  D 
Sbjct: 1   MFLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAILMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       ++ LE    +  +  +IN +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRIVKRGQTVPLELTITQKGKRAKINHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNKYLKMLQLKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +            
Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIRKLEAYAAPIHNQISRGLETLKIEYKASVTLTGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + I
Sbjct: 236 PKVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +     Q F+T T  S  D   
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHDT 353

Query: 359 NETAKFMRISNHQALCI 375
            + A    +       I
Sbjct: 354 LKQATTFHVEKGTVKKI 370


>gi|17988224|ref|NP_540858.1| recombination protein F [Brucella melitensis bv. 1 str. 16M]
 gi|62288994|ref|YP_220787.1| recombination protein F [Brucella abortus bv. 1 str. 9-941]
 gi|82698935|ref|YP_413509.1| recombination protein F [Brucella melitensis biovar Abortus 2308]
 gi|189023271|ref|YP_001934039.1| recombination protein F [Brucella abortus S19]
 gi|225851549|ref|YP_002731782.1| recombination protein F [Brucella melitensis ATCC 23457]
 gi|237814484|ref|ZP_04593482.1| DNA replication and repair protein RecF [Brucella abortus str. 2308
           A]
 gi|254690320|ref|ZP_05153574.1| recombination protein F [Brucella abortus bv. 6 str. 870]
 gi|254696437|ref|ZP_05158265.1| recombination protein F [Brucella abortus bv. 2 str. 86/8/59]
 gi|254731349|ref|ZP_05189927.1| recombination protein F [Brucella abortus bv. 4 str. 292]
 gi|256045793|ref|ZP_05448671.1| recombination protein F [Brucella melitensis bv. 1 str. Rev.1]
 gi|256112512|ref|ZP_05453433.1| recombination protein F [Brucella melitensis bv. 3 str. Ether]
 gi|256258574|ref|ZP_05464110.1| recombination protein F [Brucella abortus bv. 9 str. C68]
 gi|256264942|ref|ZP_05467474.1| recombination protein F [Brucella melitensis bv. 2 str. 63/9]
 gi|260546288|ref|ZP_05822028.1| recombination protein F [Brucella abortus NCTC 8038]
 gi|260563086|ref|ZP_05833572.1| recombination protein F [Brucella melitensis bv. 1 str. 16M]
 gi|260755859|ref|ZP_05868207.1| DNA replication and repair protein recF [Brucella abortus bv. 6
           str. 870]
 gi|260759082|ref|ZP_05871430.1| DNA replication and repair protein recF [Brucella abortus bv. 4
           str. 292]
 gi|260760808|ref|ZP_05873151.1| DNA replication and repair protein recF [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884884|ref|ZP_05896498.1| DNA replication and repair protein recF [Brucella abortus bv. 9
           str. C68]
 gi|265992208|ref|ZP_06104765.1| DNA replication and repair protein recF [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993948|ref|ZP_06106505.1| DNA replication and repair protein recF [Brucella melitensis bv. 3
           str. Ether]
 gi|297247411|ref|ZP_06931129.1| DNA replication and repair protein recF [Brucella abortus bv. 5
           str. B3196]
 gi|20978586|sp|Q8YED7|RECF_BRUME RecName: Full=DNA replication and repair protein recF
 gi|81309491|sp|Q57G08|RECF_BRUAB RecName: Full=DNA replication and repair protein recF
 gi|97180679|sp|Q2YPM3|RECF_BRUA2 RecName: Full=DNA replication and repair protein recF
 gi|17983989|gb|AAL53122.1| recf protein [Brucella melitensis bv. 1 str. 16M]
 gi|62195126|gb|AAX73426.1| RecF, recF protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615036|emb|CAJ09959.1| RecF protein:ATP/GTP-binding site motif A (P-loop):Aldehyde
           dehydrogenase:SMC protein, N-terminal:AAA ATPase
           [Brucella melitensis biovar Abortus 2308]
 gi|189018843|gb|ACD71565.1| recombination protein F [Brucella abortus S19]
 gi|225639914|gb|ACN99827.1| DNA replication and repair protein RecF [Brucella melitensis ATCC
           23457]
 gi|237789321|gb|EEP63531.1| DNA replication and repair protein RecF [Brucella abortus str. 2308
           A]
 gi|260096395|gb|EEW80271.1| recombination protein F [Brucella abortus NCTC 8038]
 gi|260153102|gb|EEW88194.1| recombination protein F [Brucella melitensis bv. 1 str. 16M]
 gi|260669400|gb|EEX56340.1| DNA replication and repair protein recF [Brucella abortus bv. 4
           str. 292]
 gi|260671240|gb|EEX58061.1| DNA replication and repair protein recF [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675967|gb|EEX62788.1| DNA replication and repair protein recF [Brucella abortus bv. 6
           str. 870]
 gi|260874412|gb|EEX81481.1| DNA replication and repair protein recF [Brucella abortus bv. 9
           str. C68]
 gi|262764929|gb|EEZ10850.1| DNA replication and repair protein recF [Brucella melitensis bv. 3
           str. Ether]
 gi|263003274|gb|EEZ15567.1| DNA replication and repair protein recF [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263095427|gb|EEZ19028.1| recombination protein F [Brucella melitensis bv. 2 str. 63/9]
 gi|297174580|gb|EFH33927.1| DNA replication and repair protein recF [Brucella abortus bv. 5
           str. B3196]
 gi|326408014|gb|ADZ65079.1| recombination protein F [Brucella melitensis M28]
 gi|326537732|gb|ADZ85947.1| DNA replication and repair protein RecF [Brucella melitensis M5-90]
          Length = 384

 Score =  333 bits (854), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 165/371 (44%), Positives = 231/371 (62%), Gaps = 2/371 (0%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            DV R  +   F+  A ++ M                  R ++IN +     D+L  + R
Sbjct: 71  DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINRIAA-SADDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|191636828|ref|YP_001985994.1| recombination protein F [Lactobacillus casei BL23]
 gi|301065130|ref|YP_003787153.1| recombinational DNA repair ATPase [Lactobacillus casei str. Zhang]
 gi|226737807|sp|B3W6Q9|RECF_LACCB RecName: Full=DNA replication and repair protein recF
 gi|190711130|emb|CAQ65136.1| DNA replication and repair protein recF [Lactobacillus casei BL23]
 gi|300437537|gb|ADK17303.1| Recombinational DNA repair ATPase (RecF pathway) [Lactobacillus
           casei str. Zhang]
 gi|327380866|gb|AEA52342.1| DNA replication and repair protein recF [Lactobacillus casei LC2W]
 gi|327384031|gb|AEA55505.1| DNA replication and repair protein recF [Lactobacillus casei BD-II]
          Length = 371

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 153/373 (41%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNYA++   F  +  + +G N  GKTN+LE+I  L+  R  R  +  ++
Sbjct: 1   MKLDHLVLKNYRNYAAVDTTFSPEINVLIGANAQGKTNLLESIYVLALARSHRTNNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FARV G       S +LE       +  +I+ +    + +   H  +  
Sbjct: 61  IRFGSE-----FARVSGQVSRQSGSHQLELIISHQGKRARIDRIEQPKLSQYLGHFNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D     + P++   +  ++  ++ RN  L +       D 
Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
            +   +   +A  G ++  AR +++  +S       Q        L  +    +D     
Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLETMSDYAATIQQDITKGRESLHFSYQTQVDPSLRG 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +     +     +  +     +L+GP R D++    DK +    GS G+Q+   + 
Sbjct: 236 DSEQVYTALGEMFAKQQAREIEQGTSLVGPQRDDVLFIVNDKDV-ANFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+ + TG  P+LLLD++ + LD  ++  L + +     Q F+T T        
Sbjct: 295 VKLAEIDLMKDQTGEYPVLLLDDVLSELDAARQTHLLKAI-QTKVQTFLTTTSLEGIQKE 353

Query: 358 LNETAKFMRISNH 370
           +  T    ++   
Sbjct: 354 IIATPAVFKVDEG 366


>gi|116493578|ref|YP_805312.1| recombination protein F [Lactobacillus casei ATCC 334]
 gi|227533503|ref|ZP_03963552.1| recombination protein F [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|122264959|sp|Q03D52|RECF_LACC3 RecName: Full=DNA replication and repair protein recF
 gi|116103728|gb|ABJ68870.1| DNA replication and repair protein RecF [Lactobacillus casei ATCC
           334]
 gi|227188832|gb|EEI68899.1| recombination protein F [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 371

 Score =  333 bits (853), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 154/373 (41%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNYA++   F  +  + +G N  GKTN+LE+I  L+  R  R  +  ++
Sbjct: 1   MKLDHLVLKNYRNYAAVDTTFSPEINVLIGANAQGKTNLLESIYVLALARSHRTNNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FARV G       S +LE       +  +I+ +    + +   H  +  
Sbjct: 61  IRFGSE-----FARVSGQVSRQSGSHQLELIISHQGKRARIDRIEQPKLSQYLGHFNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D     + P++   +  ++  ++ RN  L +       D 
Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
            +   +   +A  G ++  AR +++  +S       Q        L  +    +D     
Sbjct: 176 VYLDVLTDSLAAFGAELITARAKLLETMSDYAATIQQDITKGRESLHFSYQTQVDPSLRG 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   +     +     +  +     +L+GP R D++    DK +    GS G+Q+   + 
Sbjct: 236 NSEQVYTALGEMFAKQQAREIEQGTSLVGPQRDDVLFIVNDKDV-ANFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+ + TG  P+LLLD++ + LD  ++  L + +     Q F+T T        
Sbjct: 295 VKLAEIDLMKDQTGEYPVLLLDDVLSELDAARQTHLLKAI-QTKVQTFLTTTSLEGIQKE 353

Query: 358 LNETAKFMRISNH 370
           +  T    ++   
Sbjct: 354 IIATPAVFKVDEG 366


>gi|313635494|gb|EFS01731.1| DNA replication and repair protein RecF [Listeria seeligeri FSL
           N1-067]
          Length = 370

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 158/374 (42%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MLLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       ++ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRIVKRGQTVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN  L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNHYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +            
Sbjct: 176 MLLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHSQISRGLETLKIEYKASVTLAGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + +
Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +     Q F+T T  S  D + 
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHNT 353

Query: 359 NETAKFMRISNHQA 372
            + A    +     
Sbjct: 354 LKQATTFYVEKGTV 367


>gi|296131554|ref|YP_003638801.1| DNA replication and repair protein RecF [Thermincola sp. JR]
 gi|296030132|gb|ADG80900.1| DNA replication and repair protein RecF [Thermincola potens JR]
          Length = 368

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 99/372 (26%), Positives = 176/372 (47%), Gaps = 12/372 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  FRNY +L L F  +  +FVGDN  GKTNILEAI +   GR  R    AD+
Sbjct: 1   MLIDKIALLNFRNYQTLTLSFHDKLNLFVGDNAQGKTNILEAIYYSGTGRSHRTNKDADL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    ++F      E + G   + I L     +    +++N V  +   ++   +++  
Sbjct: 61  IKWN-ENYFILKISGENLHGRFVLEIGLNREGKKK---IKLNGVQKKRTGDILGTVKVIL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
             P    +  G  + RR+F+D  +  I P +   ++ ++R++  RN LL +   + +   
Sbjct: 117 FSPEDLTLVKGSPVVRRKFIDTEISQISPGYYYNLLKYQRILVQRNALLKDIKMNKNLAD 176

Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS--LTGFLDGKFDQS 239
             S  + Q+A  G K+   +++++  L+ L     +K      +L       +  K + S
Sbjct: 177 NLSVWDRQLALFGAKLIYKKLDVLKKLTPLTRLMHRKITNGKEELETRYISNVVDKDNLS 236

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +++ + +K+   R  +     T+IGPHR DL+     K +   +GS G+Q+   + I
Sbjct: 237 LEEIEKLFLEKIAANRDEELDRGITIIGPHRDDLVFYINGKEVK-HYGSQGQQRSCSLSI 295

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL 358
            LA   L+   TG  P+LLLD++ + LDED+R  L   V     Q F+T TD S+  ++L
Sbjct: 296 KLAELELVKGETGEYPLLLLDDVMSELDEDRRQYLLESVQSK-IQTFITTTDASLLAENL 354

Query: 359 NETAKFMRISNH 370
            + A    +   
Sbjct: 355 KKNASLFTVREG 366


>gi|153815426|ref|ZP_01968094.1| hypothetical protein RUMTOR_01661 [Ruminococcus torques ATCC 27756]
 gi|317500888|ref|ZP_07959100.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089210|ref|ZP_08338112.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847285|gb|EDK24203.1| hypothetical protein RUMTOR_01661 [Ruminococcus torques ATCC 27756]
 gi|316897768|gb|EFV19827.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405762|gb|EGG85291.1| DNA replication and repair protein recF [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 362

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 99/373 (26%), Positives = 162/373 (43%), Gaps = 18/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L L FD +  I  GDN  GKTNILEA+      +  R     DV
Sbjct: 1   MVIKSLKLKNYRNYDLLDLKFDPKTNILYGDNAQGKTNILEALYLSGTTKSHRGTKDRDV 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G   S   T      ++   D+ +K       S + + I+ V IR   EL   +   
Sbjct: 61  IQFGYDESHIETIIEKRNIDFQIDMHLK-----KNSPKGIAIDKVPIRRAGELFGIVHFV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I       RRRF+D  +  +D  +   + ++ R++  RN LL + Y   +  
Sbjct: 116 FFSPEDLNIIKEGPAGRRRFIDLELSQLDKIYLNNLSNYNRIINQRNSLLKDIYGQRNLI 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+AE G KI   R + I  ++ +I +   K      +++LT      ++ S 
Sbjct: 176 ETLDIWDMQLAEYGKKILERRKQFIKQVNDIIADIHYKLTGGKERITLT------YESSL 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +   +   L   R+ D   + T +GPHR D+             GS G+Q+   + + 
Sbjct: 230 GNIT--FETALSKYRERDLRMKSTTVGPHRDDICFTTDAGLDIRKFGSQGQQRTAALSLK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+       PILLLD++ + LD+ ++N L   + +I + I  TG D+ V    + 
Sbjct: 288 LSEIELVKEELNDTPILLLDDVLSELDKHRQNYLLDSIDNIQTIITCTGLDEFVNHRFSI 347

Query: 361 TAKFMRISNHQAL 373
             K   I N  A+
Sbjct: 348 N-KIFHIKNGHAV 359


>gi|158319063|ref|YP_001511570.1| DNA replication and repair protein RecF [Alkaliphilus oremlandii
           OhILAs]
 gi|166918719|sp|A8MEA3|RECF_ALKOO RecName: Full=DNA replication and repair protein recF
 gi|158139262|gb|ABW17574.1| DNA replication and repair protein RecF [Alkaliphilus oremlandii
           OhILAs]
          Length = 365

 Score =  333 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 167/371 (45%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RNY  + L F  +  +F+GDN  GKTN++E+I   S G+ FR     ++
Sbjct: 1   MIVEELKLINYRNYEQMNLKFHPRLNVFIGDNAQGKTNLIESIYLCSAGKSFRTNHDQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             +     +    +V+ +     I ++L   +    + L++N + +  + EL  +L +  
Sbjct: 61  INMNKKQAY-IHVKVKKVHSDVHIEVRL---NSERKKDLKVNQIPLVKMGELLGNLNVVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   ++      ERRRF+DR +  I  +    +  + ++++ RN+LL           
Sbjct: 117 FSPEDLKLVKEGPSERRRFMDREISQISTKFYYTLSQYNKILQHRNKLLKYNKGKEIDIE 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCA 242
             + Q+A  G  + + R   I  +S L     +K  E+  ++++     +  K +     
Sbjct: 177 VWDEQLAAAGAWLIVYRRNFIKKISILAKLMHRKITESIENLEVIYEPNVKVKENDEVDV 236

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +KE+  + L +   +D     T  GPHR D+I+      +   +GS G+Q+  ++ + LA
Sbjct: 237 IKEKILQNLKENFNVDKQRGLTTCGPHRDDMILKINGLDVK-TYGSQGQQRTAVLSLKLA 295

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NET 361
              L+    G  PILLLD++ + LD  +++ L   +     Q F+T T       L  E 
Sbjct: 296 ELELVKGEVGEYPILLLDDVMSELDSKRQHYLIHNLKS--VQTFITTTMMETLKDLKPED 353

Query: 362 AKFMRISNHQA 372
                ++  Q 
Sbjct: 354 RAVFYVNKGQI 364


>gi|154503046|ref|ZP_02040106.1| hypothetical protein RUMGNA_00868 [Ruminococcus gnavus ATCC 29149]
 gi|153796287|gb|EDN78707.1| hypothetical protein RUMGNA_00868 [Ruminococcus gnavus ATCC 29149]
          Length = 361

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 103/372 (27%), Positives = 168/372 (45%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L + FD++  I  GDN +GKTNILEA+      +  R     D+
Sbjct: 1   MVIKSLKLKNYRNYELLDMTFDSKTNILYGDNALGKTNILEALYLSGTTKSHRGTKDRDL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G   S   T    +GME   D+ +K       S + + IN + IR   EL   +   
Sbjct: 61  IQFGREESHLETIVEKKGMEFQIDMHLK-----KNSPKGIAINKIPIRKASELFGIVHFV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I       RRRF+D  +  ID  +   + ++ R++  RN LL E Y      
Sbjct: 116 FFSPEDLNIIKDGPAGRRRFIDLELSQIDKVYLSNLSNYNRIINQRNSLLKELYHQDHLM 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+AE G K+  +R + I  ++ +I +   +      ++ L+      ++ S 
Sbjct: 176 DTLDIWDMQLAEYGTKVIESRKQFIRQVNQIIADIHYRLTGGRERIELS------YESSL 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            +L     + L   R+ D   + T +GPHR DL     D  I    GS G+Q+   + + 
Sbjct: 230 GSLS--LEQALKKNRERDIRMKSTSVGPHRDDLCFLSGDLDIR-KFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+       PILLLD++ + LD+ ++N L   + DI + I  TG D+ V    + 
Sbjct: 287 LSEIELVKEVIKDTPILLLDDVLSELDKHRQNYLLDSIHDIQTVITCTGLDEFVNHRFSI 346

Query: 361 TAKFMRISNHQA 372
             K  R+S+   
Sbjct: 347 N-KIFRVSSGSV 357


>gi|168187274|ref|ZP_02621909.1| DNA replication and repair protein RecF [Clostridium botulinum C
           str. Eklund]
 gi|169294762|gb|EDS76895.1| DNA replication and repair protein RecF [Clostridium botulinum C
           str. Eklund]
          Length = 361

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 168/370 (45%), Gaps = 13/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  FRNY  L L   +   +F+GDN  GKTNILE+I + S G+  R     ++
Sbjct: 1   MYIKNLELINFRNYERLSLNLHSGINVFIGDNAQGKTNILESIYYCSIGKSHRTNKDKEL 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G+  ++ S +   E ++   DI I  E       + +++N + ++ + +L     + 
Sbjct: 61  IKWGARDAYISIYVSKERLDKKIDIKIFKE-----GKKGVRVNSIKLKTISDLIGVFNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   +I       RR+FLD  +  ++ ++   ++ + +++  RN +L +   +    
Sbjct: 116 MFSPEDLKIIKESPSYRRKFLDIELSKLNKKYYHSLVIYNKVLNERNTILRKWNSNKEVT 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+++ G  I   R++ I +LS    +  +        +        K       +
Sbjct: 176 EVYDYQLSKYGSYIIKERLKYIESLSLRGNKIHKDITSQKENIEFKYITSIK---DLSNI 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + ++   L    K D     T  GPHR D  V+       I +GS G+Q+  ++ I LA 
Sbjct: 233 QNDFYNILRQNIKKDFEKGSTSFGPHRDDFAVNINATDTRI-YGSQGQQRTAVLTIKLAS 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETA 362
             +I   TG  P+LLLD++ + LD +++  +   + +   Q  +TGT    + + L++  
Sbjct: 292 LEIIKEQTGEYPVLLLDDVLSELDINRQKYILNSIREF--QTIITGTGLIDIREYLDDHV 349

Query: 363 KFMRISNHQA 372
           K  +++N   
Sbjct: 350 KLFKVTNGTV 359


>gi|313640122|gb|EFS04741.1| DNA replication and repair protein RecF [Listeria seeligeri FSL
           S4-171]
          Length = 370

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 158/374 (42%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MLLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       ++ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRIVKRGQTVPLELTITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN  L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNHYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +            
Sbjct: 176 LLLDILTEQFADVAINLTKRRADFIRKLEAYAAPIHSQISRGLETLKIEYKASVTLAGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + +
Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSV 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +     Q F+T T  S  D + 
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHNT 353

Query: 359 NETAKFMRISNHQA 372
            + A    +     
Sbjct: 354 LKQATTFHVEKGTV 367


>gi|239630808|ref|ZP_04673839.1| DNA replication and repair protein recF [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|239527091|gb|EEQ66092.1| DNA replication and repair protein recF [Lactobacillus paracasei
           subsp. paracasei 8700:2]
          Length = 371

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 153/373 (41%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  +RNYA++   F  +  + +G N  GKTN+LE+I  L+  R  R  +  ++
Sbjct: 1   MKLDHLVLKNYRNYAAVDTTFSPEINVLIGANAQGKTNLLESIYVLALARSHRTNNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FARV G       S +LE       +  +I+ +    + +   H  +  
Sbjct: 61  IRFGSE-----FARVSGQVSRQSGSHQLELIISHQGKRARIDRIEQPKLSQYLGHFNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRF+D     + P++   +  ++  ++ RN  L +       D 
Sbjct: 116 FAPEDLAIVKGSPAGRRRFIDMEFGQMSPKYLYNLSQYKTFLKQRNAYLKQLKYHQAKDL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
            +   +   +A  G ++  AR +++  +S       Q        L  +    +D     
Sbjct: 176 VYLDVLTDSLAVFGAELITARAKLLETMSDYAATIQQDITKGRESLHFSYQTQVDPSLRG 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +     +     +  +     +L+GP R D++    DK +    GS G+Q+   + 
Sbjct: 236 DSEQVYTALGEMFAKQQAREIEQGTSLVGPQRDDVLFIVNDKDV-ANFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+ + TG  P+LLLD++ + LD  ++  L + +     Q F+T T        
Sbjct: 295 VKLAEIDLMKDQTGEYPVLLLDDVLSELDAARQTHLLKAI-QTKVQTFLTTTSLEGIQKE 353

Query: 358 LNETAKFMRISNH 370
           +  T    ++   
Sbjct: 354 IIATPAVFKVDEG 366


>gi|153811990|ref|ZP_01964658.1| hypothetical protein RUMOBE_02383 [Ruminococcus obeum ATCC 29174]
 gi|149831889|gb|EDM86975.1| hypothetical protein RUMOBE_02383 [Ruminococcus obeum ATCC 29174]
          Length = 362

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 156/374 (41%), Gaps = 21/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  FRNY  L+L FD    IF GDN  GKTNILE++      +  + +   ++
Sbjct: 1   MYIESIELKNFRNYQDLQLDFDKGTNIFYGDNAQGKTNILESVYICGTTKSHKGSKDKEI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            R G        + +  M    ++S K++    +   + + IN + I+   EL   + + 
Sbjct: 61  IRFGEEE-----SHIRMMVKKDELSYKIDMHLRKNKAKGVAINGLRIKKARELFGIVNLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRF+D  +  +D  +   +  +  ++  RNRLL + Y + S  
Sbjct: 116 FFSPEDLNIIKNGPGERRRFMDLELCQLDQIYLTDLAGYNHIVNQRNRLLKDLYQNPSLR 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + QM + G KI   R + +  L+ +I +  +        L +            
Sbjct: 176 ETLEIWDIQMLQYGKKIIEKRRDFVRDLNDVIQDIHRNLTGGEEHLEVIY--------EP 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E + + L   R+ D   + T  GPHR DL        I    GS G+Q+   + + 
Sbjct: 228 STESECFEETLKKNRERDMRMKMTSAGPHRDDLCFMVNGIDIR-KFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359
           L+   L+       PILLLD++ + LD +++  L   + DI  Q  +T T    F     
Sbjct: 287 LSEIYLVKEKIKDTPILLLDDVLSELDSNRQTYLLDSIHDI--QTLITCTGLDDFVSHQF 344

Query: 360 ETAKFMRISNHQAL 373
              K  ++   +  
Sbjct: 345 HINKVFKVVKGEVF 358


>gi|238855509|ref|ZP_04645814.1| DNA replication and repair protein RecF [Lactobacillus jensenii
           269-3]
 gi|282931535|ref|ZP_06337034.1| DNA replication and repair protein RecF [Lactobacillus jensenii
           208-1]
 gi|238831875|gb|EEQ24207.1| DNA replication and repair protein RecF [Lactobacillus jensenii
           269-3]
 gi|281304342|gb|EFA96445.1| DNA replication and repair protein RecF [Lactobacillus jensenii
           208-1]
          Length = 374

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 152/374 (40%), Gaps = 15/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  +RN+  L   F     IF+G N  GKTN+LEA+ FL+  R  R  S  ++
Sbjct: 1   MYLKQLKLQNWRNFEELETGFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  +       + G    + +   L+ R +   +   IN +    +      L    
Sbjct: 61  IRFGQKAAI-----LSGHVVKSQVETDLQVRINAKGKKAWINRIEQSKLSRYVGQLTAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+P +      + ++++ +N  L +       D 
Sbjct: 116 FSPEDLALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSKDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+A L  +I   R++ +  LS    +     +    +L +            
Sbjct: 176 VFLEVLSDQLAGLAAEIISRRLKYLTYLSEYAKKAYAAISNEKEQLEVVYNPSVPLTSEQ 235

Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
              +  Y + L         +  +  TL GPHR DL     DK     + S G+Q+ + +
Sbjct: 236 ITSESIYHEVLACFKKNEAGEIRTGTTLSGPHRDDLKF-LLDKKDAHLYASQGQQRTIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +LI   TG  P LLLD++ + LD  +++AL   +    +Q F+T TD      
Sbjct: 295 SLKLAEIQLIHQITGEYPALLLDDVMSELDHTRQSALLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNH 370
            + +  K  R+   
Sbjct: 354 EIVKKPKIFRLKAG 367


>gi|291548765|emb|CBL25027.1| recF protein [Ruminococcus torques L2-14]
          Length = 363

 Score =  332 bits (851), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 101/374 (27%), Positives = 161/374 (43%), Gaps = 21/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L L FD +  I  GDN  GKTNILEA+      +  R     D+
Sbjct: 1   MIIKSLKLKNYRNYDLLDLTFDPKTNILYGDNAQGKTNILEALYLSGTTKSHRGTKDRDM 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G   S   T    +G+    D+ +K       S + + I+ V IR   EL   +   
Sbjct: 61  IQFGYDESHLETVVEKKGIIFQIDMHLK-----KNSPKGIAIDKVPIRRASELFGIVHFV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I       RRRF+D  +  +D  +   + ++ R++  RN LL + Y  +   
Sbjct: 116 FFSPEDLNIIKEGPAGRRRFIDLELSQLDKIYLNNLSNYNRIINQRNSLLKDIYGSNQQH 175

Query: 183 ----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                   + Q+A  G K+   R E +  ++ +I E   +      +LSLT         
Sbjct: 176 LLETLDIWDMQLAAYGTKVLDRRKEFVRQVNEIISEIHFRLTGGKERLSLTYESSIG--- 232

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                +    + L   R+ D   + T +GPHR DL     D  I    GS G+Q+   + 
Sbjct: 233 -----EMSMEQALKKNRERDLRMKSTSVGPHRDDLCFLSGDLDIR-KFGSQGQQRTAALS 286

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA   L+    G  PILLLD++ + LD++++N L   + DI + I  TG D+ V    
Sbjct: 287 LKLAEIELVKRIIGDTPILLLDDVLSELDKNRQNYLLDSIHDIQTVITCTGLDEFVNHRF 346

Query: 359 NETAKFMRISNHQA 372
           +   K   + +   
Sbjct: 347 SIN-KIFHVKSGHV 359


>gi|313904728|ref|ZP_07838102.1| DNA replication and repair protein RecF [Eubacterium cellulosolvens
           6]
 gi|313470521|gb|EFR65849.1| DNA replication and repair protein RecF [Eubacterium cellulosolvens
           6]
          Length = 362

 Score =  332 bits (851), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 93/372 (25%), Positives = 161/372 (43%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRNY  + L FD+   +  GDN  GKTN+LEAI  L   +  + +  +++
Sbjct: 1   MHVESLELKNFRNYERIVLDFDSGTNVLYGDNAQGKTNLLEAIHVLGTTKSHKGSHDSEM 60

Query: 65  TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G          R  G+    D+ +K         + + I+ + IR   +L   + I 
Sbjct: 61  IRFGEDEAHMRLIFRKNGIAHKVDMHLK-----KNGKKGVAIDGLPIRKAADLFGMINIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
              P    I      ERRRFLD  +  +D  + + + D+ R++  RN LL +  F+ S  
Sbjct: 116 LFSPEDLNIIKHGPKERRRFLDSELCQLDKIYYQNLADYNRILVQRNALLKDIPFNPSLE 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+  LG  I   R      L+ +++   +       ++ +    D       
Sbjct: 176 PTLDVWDMQLIRLGSHIIEQRSRFTRKLNEIVVGIHENLTGGREQIEIIYEPDV------ 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               EE+ +KL  GR  D   + +  GPHR D  V      I    GS G+Q+   + + 
Sbjct: 230 --TAEEFEEKLTRGRPRDLKLKTSGTGPHRDDFRVQVNGIDIR-HFGSQGQQRSAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+    G  P+LLLD++ + LD +++  L + + DI + I  TG D+ + ++   
Sbjct: 287 LSEIYLVKEMIGDTPVLLLDDVLSELDRNRQKTLLQNMNDIQTLITCTGLDELIENNFPV 346

Query: 361 TAKFMRISNHQA 372
             +   I N   
Sbjct: 347 N-RAFHIVNGSV 357


>gi|291521104|emb|CBK79397.1| DNA replication and repair protein RecF [Coprococcus catus GD/7]
          Length = 365

 Score =  331 bits (850), Expect = 7e-89,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 157/372 (42%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RNY  L +       IF GDN  GKTN+LEA+   +  +  R +   ++
Sbjct: 1   MYVESLALENYRNYVHLSVNLSPGINIFFGDNAQGKTNVLEALYMCATTKSHRGSRDREI 60

Query: 65  TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G            E +    D+ +K         + + I+ + IR   EL   + + 
Sbjct: 61  IRFGEEEAHIRMLLSKEHVRHKIDVHLK-----KNKSKGIAIDGIPIRKSGELFGLVHMI 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
              P    +      ERRRFLD  +  +D  +   + ++ +++  RN LL +  FDS+  
Sbjct: 116 CFSPEDLAMIKNGPGERRRFLDLELCQLDKVYLHNISNYNKIVNQRNNLLKQIGFDSALK 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + QM   G K+   R   I  L+  + +   +      KL L      +     
Sbjct: 176 DTLDIWDMQMVNYGRKVIETRRLFIAQLNEWLEQIHGRLTGNREKLRLVYQPSTE----- 230

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E++ + L   R  D   + +  GPHR D +    +  I    GS G+Q+   + + 
Sbjct: 231 ---PEDFERVLLSKRDQDIRMKMSGTGPHRDDFLFMVGEVDIR-KFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L+  + G  P+LLLD++ + LD  ++N L   + DI + I  TG D+ V    N 
Sbjct: 287 LAEIELVRQSIGDEPVLLLDDVLSELDSSRQNYLLDCIKDIQTVITCTGLDEFVNHRFNI 346

Query: 361 TAKFMRISNHQA 372
             +  ++++   
Sbjct: 347 D-RIFKVTDGTV 357


>gi|315640353|ref|ZP_07895469.1| recombination protein F [Enterococcus italicus DSM 15952]
 gi|315483889|gb|EFU74369.1| recombination protein F [Enterococcus italicus DSM 15952]
          Length = 373

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 161/372 (43%), Gaps = 11/372 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  FRNY  L+L F     IF+G+N  GKTN+LE+I  L+  R  R  +  ++
Sbjct: 1   MRLNSLTLRHFRNYDELQLPFAKDLIIFLGENAQGKTNLLESIYVLAMTRSHRTTNEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A + G+      +I LE    +  R  ++N +  + +      L +  
Sbjct: 61  IEWDCAE-----AYLAGVVEKKQQTIPLELGLSKKGRKTKVNHIEQKKLSSYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+FLD  +  ID  +   ++ ++++++ RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGTPQLRRKFLDMEIGQIDSVYLYNLVQYQQVLKQRNQYLKQLAEKKQTDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239
            +   +  Q+   G KI   R+  +  L     +  Q  +     L+L       F++ +
Sbjct: 176 LYLDILTEQLVTFGSKILWTRINFVKKLEYWANQLHQLISQEKETLTLHYDATVAFEEAN 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++  Y++     R  +   + TLIGPHR +L+     K +   +GS G+Q+   + +
Sbjct: 236 LADIEAAYSQAFAAIRAKELFRQMTLIGPHRDELVFFINGKNV-QTYGSQGQQRTTALSV 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   L+   TG  PILLLD++ + LD+ ++  L   +         T T + V D + 
Sbjct: 295 KLAEIDLMKAETGEYPILLLDDVMSELDDSRQVHLLEAIEGKVQTFLTTTTIEHVRDKMT 354

Query: 360 ETAKFMRISNHQ 371
                  ++  +
Sbjct: 355 VQPAIYYVNQGK 366


>gi|192288436|ref|YP_001989041.1| recombination protein F [Rhodopseudomonas palustris TIE-1]
 gi|192282185|gb|ACE98565.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           TIE-1]
          Length = 379

 Score =  331 bits (850), Expect = 8e-89,   Method: Composition-based stats.
 Identities = 146/371 (39%), Positives = 205/371 (55%), Gaps = 4/371 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNY    L   A   + VG NG GKTN LEAISFLSPGRG RRA+  DV 
Sbjct: 5   RITRLTLTHFRNYRGASLTTTADQVVLVGPNGAGKTNCLEAISFLSPGRGLRRATLEDVA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++  A VEG  GLA +   +E    D  + R  +I+   +        HLR+ 
Sbjct: 65  NHEGDGSWAVSAEVEGALGLATLGTGIEPPRGDTPTTRRCRIDREPVGSAAAFGDHLRMV 124

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182
           WL PSMD +F G + ERRRF DR+V AID  H  R+   +R +R RNRLL +    DS W
Sbjct: 125 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDIRNADSHW 184

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
             +IE + AEL + +   R +    L++++        FP  KL L G+++     +   
Sbjct: 185 LDAIERETAELAIAVAAQRGQTALKLAAMLDARGATSAFPSAKLMLDGWMENALTSEPAT 244

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+++ Y   L D R  D+ + RTL GPH +DL V Y  KA+     STGEQK +L+G+ L
Sbjct: 245 AVEDRYRAILRDSRGRDAAAGRTLDGPHLTDLEVIYAPKAMPARDASTGEQKALLIGLVL 304

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHA+L++ TT   P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D   F  +   
Sbjct: 305 AHAQLVAETTSITPLLLLDEVVAHLDPGRREALFTELGKLGAQVWMTGADPMAFAEIGPA 364

Query: 362 AKFMRISNHQA 372
           A    + + + 
Sbjct: 365 AGIFDVESGRI 375


>gi|260665213|ref|ZP_05866062.1| recombination protein F [Lactobacillus jensenii SJ-7A-US]
 gi|260560950|gb|EEX26925.1| recombination protein F [Lactobacillus jensenii SJ-7A-US]
          Length = 374

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 152/374 (40%), Gaps = 15/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  +RN+  L   F     IF+G N  GKTN+LEA+ FL+  R  R  S  ++
Sbjct: 1   MYLKQLKLQNWRNFEELETGFSPNVNIFIGQNAQGKTNLLEAVYFLALTRSHRTNSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  +       + G    + +   L+ R +   +   IN +    +      L    
Sbjct: 61  IRFGQKATI-----LSGHVVKSQVETDLQVRINAKGKKAWINRIEQSKLSRYVGQLTAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+P +      + ++++ +N  L +       D 
Sbjct: 116 FSPEDLALVKGAPSLRRRFMDLEFGQINPEYLYFSSQYRQVLQQKNNYLKQLANGKSKDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+A L  +I   R++ +  LS    +     +    +L +            
Sbjct: 176 VFLEVLSDQLAGLAAEIISRRLKYLTYLSEYAKKAYAAISNEKEQLEVVYNPSVPLTSEQ 235

Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
              +  Y + L         +  +  TL GPHR DL     DK     + S G+Q+ + +
Sbjct: 236 ITSESIYHEVLACFKKNEAGEIRTGTTLSGPHRDDLKF-LLDKKDAHLYASQGQQRTIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +LI   TG  P LLLD++ + LD  +++AL   +    +Q F+T TD      
Sbjct: 295 SLKLAEIQLIHQITGEYPALLLDDVMSELDHTRQSALLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNH 370
            + +  K  R+   
Sbjct: 354 EIVKKPKIFRLKAG 367


>gi|254713411|ref|ZP_05175222.1| recombination protein F [Brucella ceti M644/93/1]
 gi|254716232|ref|ZP_05178043.1| recombination protein F [Brucella ceti M13/05/1]
 gi|261218005|ref|ZP_05932286.1| DNA replication and repair protein recF [Brucella ceti M13/05/1]
 gi|261321145|ref|ZP_05960342.1| DNA replication and repair protein recF [Brucella ceti M644/93/1]
 gi|260923094|gb|EEX89662.1| DNA replication and repair protein recF [Brucella ceti M13/05/1]
 gi|261293835|gb|EEX97331.1| DNA replication and repair protein recF [Brucella ceti M644/93/1]
          Length = 384

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 164/371 (44%), Positives = 230/371 (61%), Gaps = 2/371 (0%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            DV R  +   F+  A ++ M                  R ++IN +     D+L  + R
Sbjct: 71  DDVARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINGIAA-SADDLLDYAR 129

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W+V SMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D  
Sbjct: 130 ILWVVSSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQ 189

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
           W  +IE QMAELG  I  AR + +  ++++I     +  FP     L G L+ +   ++ 
Sbjct: 190 WLDAIENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAA 249

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+ 
Sbjct: 250 LDLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLI 309

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++FD+L  
Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG 369

Query: 361 TAKFMRISNHQ 371
            A+F  +S  Q
Sbjct: 370 DAQFFNVSAGQ 380


>gi|254503692|ref|ZP_05115843.1| RecF/RecN/SMC N terminal domain, putative [Labrenzia alexandrii
           DFL-11]
 gi|222439763|gb|EEE46442.1| RecF/RecN/SMC N terminal domain, putative [Labrenzia alexandrii
           DFL-11]
          Length = 385

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 153/372 (41%), Positives = 223/372 (59%), Gaps = 5/372 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L ++ FRNYA + +   A    FVG NG GKTNILEAISFL+ GRG RRA+  D+ 
Sbjct: 8   RLTRLTLTGFRNYAIMGIGLSAGMVAFVGANGAGKTNILEAISFLTAGRGLRRAALTDIA 67

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           R+G    +S  A++   +   + S+          R ++I+   +R  + L  ++R+ WL
Sbjct: 68  RVGGDGTWSVSAKIHLDD--IETSLGTGATAGVPGRKVRIDGEDMRSSESLLDYMRVLWL 125

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           VPSMD +F+G   +RRRFLDR+  AIDP H RR+ DFE  +R RN+LL +G  D ++ S+
Sbjct: 126 VPSMDGLFTGPGSDRRRFLDRLTLAIDPAHGRRVSDFENALRQRNKLLDQGGSD-AYLSA 184

Query: 186 IEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHIKLSLTGFLDGK-FDQSFCAL 243
           +E Q+A LG  ++ AR E +  L  +I    ++   FP   LSL G  + +    S    
Sbjct: 185 LELQVASLGTAVSFARQETVGLLKQMIDGRPIENTTFPQAMLSLEGTFEAETIGMSASDQ 244

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++ Y + L  GR  D  + RTL GPH SDL V +  K +  A  STGEQK +L+G+ LAH
Sbjct: 245 EDHYRRLLEQGRHRDRAAGRTLTGPHLSDLKVRHAAKDMPAAQSSTGEQKALLIGLVLAH 304

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           A L +  +G  P+LLLDE++AHLD D+R ALF  +  +G Q+FMTGTD S+FD+L   ++
Sbjct: 305 AELTAKVSGMTPVLLLDEVAAHLDPDRRAALFERLDALGGQVFMTGTDASLFDALPVHSE 364

Query: 364 FMRISNHQALCI 375
              + N++A  I
Sbjct: 365 VFEVGNNEARLI 376


>gi|325265439|ref|ZP_08132162.1| DNA replication and repair protein RecF [Clostridium sp. D5]
 gi|324029297|gb|EGB90589.1| DNA replication and repair protein RecF [Clostridium sp. D5]
          Length = 361

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 160/372 (43%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L L FD +  I  GDN  GKTN+LEA+      +  R     D+
Sbjct: 1   MVIKSLKLKNYRNYELLDLTFDPKTNILYGDNAQGKTNVLEALYLSGTTKSHRGTKDRDL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +     +   T     G+E   D+ +K       S + + IN + IR   EL   +   
Sbjct: 61  IQFERDEAHLETIVEKRGIEYQIDMHLK-----KNSPKGIAINKIPIRKASELFGIIHFV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I       RRRF+D  +  +D  +   + ++ R++  RN LL + Y   +  
Sbjct: 116 FFSPEDLNIIKDGPSGRRRFIDLELSQLDKVYLSNLSNYNRIINQRNSLLKDIYKQENLR 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ E G K+  +R   I  ++ +I     K       ++L+      ++ S 
Sbjct: 176 ETLDIWDMQLVEYGTKVMESRKRFIEDVNEIISNIHYKLTGGKENITLS------YECSV 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L     + L   R+ D   + T +GPHR DL        I    GS G+Q+   + + 
Sbjct: 230 GNLT--LEQALKKNRERDMRLKSTSVGPHRDDLCFMAGSLDIR-KFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+ +     P+LLLD++ + LD+ ++N L   + DI + I  TG D+ V    + 
Sbjct: 287 LSEIELVRSLIRDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTVITCTGLDEFVNHRFSI 346

Query: 361 TAKFMRISNHQA 372
             K   + N Q 
Sbjct: 347 N-KIFHVKNGQV 357


>gi|226326149|ref|ZP_03801667.1| hypothetical protein COPCOM_03968 [Coprococcus comes ATCC 27758]
 gi|225205691|gb|EEG88045.1| hypothetical protein COPCOM_03968 [Coprococcus comes ATCC 27758]
          Length = 361

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 98/372 (26%), Positives = 158/372 (42%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L + ++RNY  L + FD    IF GDN  GKTNILE +      +  R     D+
Sbjct: 1   MIIKSLKLKDYRNYEILNIEFDHATNIFYGDNAQGKTNILEGVYLSGTTKSHRGTKDRDL 60

Query: 65  TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G       T     G+    D+ +K       S + + IN V IR   EL       
Sbjct: 61  IRFGQDEAHIETVIEKNGVPWQIDMHLK-----KNSPKGIAINKVPIRRASELFGLTNFV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180
           +  P    I      ERRRF+D  +  +D  +   + ++ R +  RNRLL + Y+     
Sbjct: 116 FFSPEDLNIIKNGPAERRRFMDLELSQLDKVYLSDLANYNRTLNQRNRLLKDAYYRDDIL 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ + G KI   R+  I  ++++I +   K      ++ L+      ++   
Sbjct: 176 DTLDVWDMQLVQYGEKIIQRRLRFIEEVNAIIGDIHHKLTGGRERIGLS------YEPGC 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            AL       L   R+ D   + T +GPHR D+        I    GS G+Q+   + + 
Sbjct: 230 GALS--LEAALEKNRERDIRMKSTSVGPHRDDICFMAGGIDIR-RFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+       P+LLLD++ + LD+ ++N L   + DI + I  TG D+ V    + 
Sbjct: 287 LSEIELVRQIIKDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGLDEFVNHRFSI 346

Query: 361 TAKFMRISNHQA 372
             K   + N   
Sbjct: 347 N-KVFHVQNGHV 357


>gi|91974485|ref|YP_567144.1| recombination protein F [Rhodopseudomonas palustris BisB5]
 gi|91680941|gb|ABE37243.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           BisB5]
          Length = 378

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 145/370 (39%), Positives = 210/370 (56%), Gaps = 3/370 (0%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNY +  L    +  + VG NG GKTN LEAISFLSPGRG RRA+  DV+
Sbjct: 5   RITRLTLTHFRNYRAAALHTRGERVVLVGANGAGKTNCLEAISFLSPGRGLRRATLDDVS 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++  A VEG  GLA +   ++    D  + R  +I+   +        HLR+ 
Sbjct: 65  DHQGDGSWAVSAEVEGALGLATLGTGIDPPRADAATTRRCRIDREPVGSATAFGDHLRMV 124

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P+MD +F G + ERRRF DR+V AID +H  R+   +R +R RNRLL E   D  W 
Sbjct: 125 WLTPAMDGLFMGAASERRRFFDRLVLAIDSQHSSRVSALDRSLRSRNRLLEERNADRHWL 184

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242
            +IE + AEL V +   R +    L++++        FP  K+ L G+++     +   A
Sbjct: 185 DAIERETAELAVAVAAMRGQTAARLAAMLDARGAASAFPSAKIMLDGWMESALLTEPATA 244

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++ Y   L DGR  D+ + RTL GPH +DL V Y  KA+     STGEQK +L+G+ LA
Sbjct: 245 VEDRYRAILRDGRLRDAAAGRTLDGPHLTDLQVIYAPKAMPARDASTGEQKALLIGLVLA 304

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA+L+S  TG  P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D + F  +   A
Sbjct: 305 HAQLVSEITGITPLLLLDEVVAHLDPARRRALFAELERLGAQVWMTGADPAGFAEIGPDA 364

Query: 363 KFMRISNHQA 372
           +   + + + 
Sbjct: 365 EIFTVESGRI 374


>gi|323486746|ref|ZP_08092065.1| DNA replication and repair protein recF [Clostridium symbiosum
           WAL-14163]
 gi|323399885|gb|EGA92264.1| DNA replication and repair protein recF [Clostridium symbiosum
           WAL-14163]
          Length = 360

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 156/374 (41%), Gaps = 19/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +  +RNY  L + FD    +  GDN  GKTNILE++   +  +  R +   ++
Sbjct: 1   MIIESLELKNYRNYKELHINFDPGTNVLYGDNAQGKTNILESVYVCATTKSHRGSKDREI 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              G   S      R + +    D+ +K         + + IN + I    EL   + + 
Sbjct: 61  IEFGEEESHIKMNIRKDDVPYRIDMHLK-----KNKTKGVAINGIAIHKASELFGVVNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    +      ERRRF+D  +  ++  +   ++ + +++  RN+LL E  F   + 
Sbjct: 116 FFSPEDLNLIKNGPAERRRFVDLELCQLNRLYVHSLVQYNKIILQRNKLLKEIAFRPEYE 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+   G ++   R + I+ ++ +I +     +    +L +    + + D   
Sbjct: 176 EMLDIYDMQLVSYGRELIHYRNDFIDQMNGIIRDIHFNLSGGKEELEIRYEPNTEAD--- 232

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                   K L   R  D   + TL GPHR D+     +  I    GS G+Q+   + + 
Sbjct: 233 -----VLEKALKKSRMQDLRQKTTLTGPHRDDISFYVNNIDIR-KFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L+       PILLLD++ + LD  ++  L   ++ I + I  TG D        +
Sbjct: 287 LAEIELVKKIVKDYPILLLDDVLSELDSGRQEHLLSGISHIQTVITCTGLD-DFISHCFQ 345

Query: 361 TAKFMRISNHQALC 374
             K  ++ N    C
Sbjct: 346 IDKTFKVVNGTVDC 359


>gi|315174179|gb|EFU18196.1| recombination protein F [Enterococcus faecalis TX1346]
          Length = 375

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 166/376 (44%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +     A++ G+      ++ LE       R   +N +  + +      L +  
Sbjct: 61  IGWEQAA-----AKISGVVEKKTGTVPLEILISNKGRKTMVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +       D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q+AE G K+  AR+  +  L        QK +     L++        D   
Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFLKKLEHWANLLHQKISHGRETLTIDYASSIPIDNTD 235

Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S  AL+ +  ++L + RK +     T +GPHR DL+     + +   +GS G+Q+   +
Sbjct: 236 LSLEALQNQLLQQLMNNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356
            I LA   L+ + TG  P+LLLD++ + LD +++  L   +     Q F+T T      D
Sbjct: 295 SIKLAEIDLMHSETGEYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDRIKD 353

Query: 357 SLNETAKFMRISNHQA 372
            L        +   + 
Sbjct: 354 KLTVEPDIFYVQQGKI 369


>gi|115522033|ref|YP_778944.1| recombination protein F [Rhodopseudomonas palustris BisA53]
 gi|115515980|gb|ABJ03964.1| DNA replication and repair protein RecF [Rhodopseudomonas palustris
           BisA53]
          Length = 379

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 143/371 (38%), Positives = 211/371 (56%), Gaps = 4/371 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNYA+  L  +A   +  G NG GKTN LEAIS LSPGRG RRA+  D+ 
Sbjct: 5   RIHRLTLTHFRNYAAASLRVNADLVVLAGPNGAGKTNCLEAISLLSPGRGLRRATLDDIA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNKHLRI 122
                  ++  A +EG  GLA +   ++ R D +    R  +I+   +        HLR+
Sbjct: 65  DNQGDGSWAVSAEIEGALGLATLGTGIDPRGDEAASTTRRCRIDRENVGSAAAFGDHLRM 124

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P+MD +F G + ERRRF DR+V AID +H  R+   +R +R RNRLL +   D+ W
Sbjct: 125 VWLTPAMDALFMGAASERRRFFDRLVLAIDSQHSARVSALDRSLRSRNRLLEQRSGDTHW 184

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
             ++E + AEL V +   R E    L++ +        FP  +++L G+++G    +   
Sbjct: 185 LDAVERETAELAVAVAAMRGETATRLAAALSARGAASPFPSAEIALDGWMEGALRSEPAT 244

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+++ Y   L DGR  D+ + RTL GPH +DL V Y  KA+     STGEQK +L+G+ L
Sbjct: 245 AVEDRYRAILRDGRPRDAAAGRTLDGPHLTDLRVIYAPKAMPARDASTGEQKALLIGLIL 304

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHA L++  TG  P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D + F  L  +
Sbjct: 305 AHAHLVAEMTGITPLLLLDEVVAHLDPSRRRALFEELAKLGAQVWMTGADPAAFVDLGAS 364

Query: 362 AKFMRISNHQA 372
            +   + N + 
Sbjct: 365 GEMFEVDNGRI 375


>gi|49474938|ref|YP_032979.1| recombination protein F [Bartonella henselae str. Houston-1]
 gi|49237743|emb|CAF26935.1| DNA replication and repair protein recF [Bartonella henselae str.
           Houston-1]
          Length = 377

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 168/376 (44%), Positives = 231/376 (61%), Gaps = 6/376 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +++ ++ L +  +RNY S  + F  QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y
Sbjct: 5   VHKVAVRQLKLLRYRNYFSFNIRFSGQHVVFTGHNGSGKTNLLEALSFLSPGRGLRRAAY 64

Query: 62  ADVT-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +DV+   G    F  FAR+E  + G  +I   LE  D+   R + IN V     D L  +
Sbjct: 65  SDVSFANGGGEGFVVFARLECALYGEVNIGTALEMSDN--SRKVHINGVN-ETGDCLTDY 121

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             +S L PSMD +F+G S+ERRRFLDRMV AIDP H RR+ D++R+MR RNRL  +G  D
Sbjct: 122 CHMSILTPSMDGLFTGSSLERRRFLDRMVLAIDPLHSRRIADYDRVMRARNRLFLDGNED 181

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238
            +W  ++E QMAEL   I+ AR+++I  L+ ++     +  FP   L + GFL+    + 
Sbjct: 182 CAWFDALEKQMAELATAISAARIDVIRLLNDMLARTPSQLPFPRAFLQIDGFLEAALSKI 241

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   ++E++  +L   R +D  + RTL GPHR+DL V Y DK +  A  STGEQK +L G
Sbjct: 242 SAVEVEEQFCDRLQHNRAIDRAAGRTLEGPHRTDLQVFYADKNMAAASCSTGEQKALLTG 301

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + L HARL    +   PILLLDEI AHLD  +R ALF I+ D+G Q FMTGTD  +F++L
Sbjct: 302 LVLCHARLTGLMSERTPILLLDEIVAHLDSHRRAALFDILDDLGGQTFMTGTDPILFNAL 361

Query: 359 NETAKFMRISNHQALC 374
              A+F  I +   L 
Sbjct: 362 KGRAEFFAIKDGTLLQ 377


>gi|288959568|ref|YP_003449909.1| DNA replication and repair protein [Azospirillum sp. B510]
 gi|288911876|dbj|BAI73365.1| DNA replication and repair protein [Azospirillum sp. B510]
          Length = 394

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 143/374 (38%), Positives = 215/374 (57%), Gaps = 10/374 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + ++ FR Y S+RL  D +    +G NG GKTN+LEA+SFL+PGRG R A  A+V R
Sbjct: 20  VRRMTLTRFRGYDSVRLEPDHRPVALIGPNGAGKTNLLEAVSFLAPGRGLRGARLAEVER 79

Query: 67  IGSP--SFFSTFARVEGMEGLADISIKLETRDD-----RSVRCLQINDVVIRVVDELNKH 119
           +GSP  + ++  A ++   G  +I    E  D      R  R ++I+    +    L +H
Sbjct: 80  LGSPPGAGWAVAATLDTPLGPVEIGTGREPHDGNRASDRDRRLVRIDGHPAKGQTALAEH 139

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           + + WL P MDR+F   +  RRRFLDR+VF  DP H  R+  +E  +R R RLL +G FD
Sbjct: 140 VAMVWLTPQMDRLFLEGASGRRRFLDRLVFGFDPAHAGRLSRYEHALRERARLLRDGRFD 199

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
             W  ++E QMA  G+ +  AR E++  L +     +    FP   L++ G ++   D+ 
Sbjct: 200 EGWLGALEDQMATTGIAVAAARREVVQRLRAACARSI--GPFPAADLAVAGTVERWLDEG 257

Query: 240 FC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
              A ++     L  GR+ D+      +GPH+SDL V +  K +  A  STGEQK +L+ 
Sbjct: 258 PALAAEDSLRDSLRLGRRADADGGGATLGPHKSDLAVRHAPKDMPAALCSTGEQKALLIA 317

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           I LA+ARL++   G APILLLDE++AHLD ++R ALF  +  +G+Q +MTGTD+ +F+ L
Sbjct: 318 IVLANARLLAAERGAAPILLLDEVAAHLDPERRAALFGEILALGAQAWMTGTDEGIFNPL 377

Query: 359 NETAKFMRISNHQA 372
            E A+  RI +   
Sbjct: 378 GEDARRFRIEDAHI 391


>gi|75674202|ref|YP_316623.1| recombination protein F [Nitrobacter winogradskyi Nb-255]
 gi|74419072|gb|ABA03271.1| DNA replication and repair protein RecF [Nitrobacter winogradskyi
           Nb-255]
          Length = 385

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 138/379 (36%), Positives = 214/379 (56%), Gaps = 7/379 (1%)

Query: 1   MTNRI---KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           M   +   +++ L+++ FRNY +      +   + VG NG GKTN LEAIS LSPGRG R
Sbjct: 1   MPGVMIPSRVRRLSLTHFRNYRAATFETRSNMIVLVGPNGAGKTNCLEAISLLSPGRGLR 60

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR---SVRCLQINDVVIRVVD 114
           RA+  D+        ++  A ++G  GLA +   ++   +    S R  +I+   +    
Sbjct: 61  RATRDDIADNTGDGSWAVSAEMQGALGLATLGTGIDAPGNEAAPSGRRCRIDREPVASAA 120

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
               HLR+ WL PSMD +F+G + +RRRFLDR+V AID  H  R+   ER +R RNRLL 
Sbjct: 121 AFGDHLRMVWLTPSMDGLFTGPASDRRRFLDRLVLAIDSEHSGRVSALERSLRSRNRLLE 180

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
             + D  WC +IE + AEL V +   R + +  L++ +       +FP   + L G+++ 
Sbjct: 181 MRHHDDLWCEAIERKTAELAVAVAAMRAQTVTRLTAALEARGGGSSFPAASIHLDGWMEN 240

Query: 235 KF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
               +    +++ Y + L   R  D+ + RTL GPH +DL V Y  K +     STGEQK
Sbjct: 241 ALLTEPATVVEDRYREILRASRPRDAAAGRTLEGPHLTDLEVIYAPKNMPAKEASTGEQK 300

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            +L+G+ LAHARL++  TG  P+LLLDE+ AHLD D+R ALF  +  +G+Q++M+G D +
Sbjct: 301 ALLIGLVLAHARLVAEMTGIIPLLLLDEVVAHLDPDRRGALFGELAGLGAQVWMSGADPA 360

Query: 354 VFDSLNETAKFMRISNHQA 372
            F +L+  ++  R+ + + 
Sbjct: 361 AFANLSAGSETFRVDSGRI 379


>gi|28209864|ref|NP_780808.1| recombination protein F [Clostridium tetani E88]
 gi|28202299|gb|AAO34745.1| recFprotein [Clostridium tetani E88]
          Length = 370

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 173/374 (46%), Gaps = 12/374 (3%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
            + +K+L +  FRNY  L +  D    +F+G+N  GKTN+LE+I + S GR  R +   +
Sbjct: 3   DMYVKYLKLINFRNYKELNIELDKNINVFIGNNAQGKTNVLESIYYASIGRSHRTSKDKE 62

Query: 64  VTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           + +     S+   +   E ++   +I +          + + +N + I  + EL   L +
Sbjct: 63  LIKWQESNSYIKIYVAKERLDKTIEIRV-----LKEGKKAINVNSININKLSELFGILNV 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SS 181
               P    I       RR+FLD  +  +  ++   ++ +++++  RN LL +G  +  +
Sbjct: 118 VIFSPEDLSIVKESPSFRRKFLDIELSKLSKQYYYNLVQYQKVLNERNMLLKKGGDEVPN 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-FDQSF 240
                + Q+A  G  I   R + +  L+ +  +   +      ++S T     K  +   
Sbjct: 178 IIGVYDEQLARFGSNIIREREKYLKKLNDIGKKIHLEITSDKEEISFTYLSSIKNKNMDD 237

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             ++E + +++   R  D   R T +GPHR D +++  +   T ++GS G+Q+   + I 
Sbjct: 238 GKIEEIFLQEIIKNRNSDIEKRYTSVGPHRDDFLININNVN-TRSYGSQGQQRTATLTIK 296

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359
            A   +I +  G  P+LLLD++ + LD  ++  +   + DI  Q  +T T  +++   L 
Sbjct: 297 FASLDIIKDEIGEYPVLLLDDVLSELDSSRQKYILSSIRDI--QTIITCTGIENIKKYLK 354

Query: 360 ETAKFMRISNHQAL 373
             AK  ++ N + +
Sbjct: 355 NDAKIFKVENGECI 368


>gi|239830849|ref|ZP_04679178.1| DNA replication and repair protein RecF [Ochrobactrum intermedium
           LMG 3301]
 gi|239823116|gb|EEQ94684.1| DNA replication and repair protein RecF [Ochrobactrum intermedium
           LMG 3301]
          Length = 384

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 168/376 (44%), Positives = 237/376 (63%), Gaps = 4/376 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EA+SFLSPGRG RRA+Y
Sbjct: 11  PDRVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAVSFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            DV R  S   F+  A ++ M  G A+I            R ++IN +     D+L  + 
Sbjct: 71  DDVARTSSLDGFAIHAALDCMIYGEAEIG-TGTAGGGEGGRKVRINGIAA-SGDDLLDYA 128

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           RI W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+ER MR RNRLL++G  D 
Sbjct: 129 RILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYERAMRSRNRLLSDGNGDD 188

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
            W  +IE+QMAELG  I  AR E +  ++++I     +  FP     L G L+ +   ++
Sbjct: 189 QWLDAIESQMAELGTAIAAARAEAMRLIAAMIERLPAEGPFPKADCFLEGTLEQRISVEA 248

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L+E++ + L DGR  D  + RTL GPHR+DLIV +  KA+  A  STGEQK +L+G+
Sbjct: 249 ALDLEEDFRRTLRDGRARDRAAGRTLEGPHRTDLIVQHRPKAMPAALCSTGEQKALLIGL 308

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++F++L 
Sbjct: 309 VLAHARLTAELSGMAPILLLDEIAAHLDTGRRAALFGILNELGGQAFMTGTDRALFEALE 368

Query: 360 ETAKFMRISNHQALCI 375
             A+F  ++      +
Sbjct: 369 GEAQFFNVAAGTLTPL 384


>gi|238915980|ref|YP_002929497.1| DNA replication and repair protein RecF [Eubacterium eligens ATCC
           27750]
 gi|259563364|sp|C4Z176|RECF_EUBE2 RecName: Full=DNA replication and repair protein recF
 gi|238871340|gb|ACR71050.1| DNA replication and repair protein RecF [Eubacterium eligens ATCC
           27750]
          Length = 363

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 170/375 (45%), Gaps = 21/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + + +FRNY  L + F+    I  GDN  GKTNILE+I   S  +  R +   ++
Sbjct: 1   MIVESVELKDFRNYEFLDMNFNEHVNIIYGDNAQGKTNILESIYMCSTSKSHRGSKDREI 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   S         GM+   D+ +K         + + +N + I+   EL   + I 
Sbjct: 61  VRFGEDESHIKLNVLKHGMKYRIDMHLK-----KNKTKGIAVNGIPIKKAVELFGIINIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181
           +  P    I      ERRRF+D  +  +D  +   ++++ +++  RN+LL +  F  S  
Sbjct: 116 FFSPEDLNIIKNGPSERRRFMDMELSQLDKIYLSNLVNYNKVLNQRNKLLKDIAFSPSEQ 175

Query: 182 ---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                   + Q+ + G  I   R   I  ++++I +   +       + +    D   + 
Sbjct: 176 LMQTLDIWDMQLVKYGSLIIKGRKSFIEKINTIISDIHSRLTGGIENIKVCYVPDVDVN- 234

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                  ++ +++ + R+ D   + T  GPH+ DLI    D  +   +GS G+Q+   + 
Sbjct: 235 -------DFEEEVRNSRQKDIKYKVTGKGPHKDDLIFLINDNDVR-KYGSQGQQRTAALS 286

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + L+   L+       P+LLLD++ + LD +++N L   + DI + +  TG ++ + + +
Sbjct: 287 LKLSEIELVKLVIKDTPVLLLDDVLSELDSNRQNFLINSIGDIQTIVTCTGLEEFINNRM 346

Query: 359 NETAKFMRISNHQAL 373
           N   K  ++++   +
Sbjct: 347 NIN-KIFKVTDGHVV 360


>gi|51316445|sp|Q899S7|RECF_CLOTE RecName: Full=DNA replication and repair protein recF
          Length = 367

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 173/373 (46%), Gaps = 12/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K+L +  FRNY  L +  D    +F+G+N  GKTN+LE+I + S GR  R +   ++
Sbjct: 1   MYVKYLKLINFRNYKELNIELDKNINVFIGNNAQGKTNVLESIYYASIGRSHRTSKDKEL 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +     S+   +   E ++   +I +          + + +N + I  + EL   L + 
Sbjct: 61  IKWQESNSYIKIYVAKERLDKTIEIRV-----LKEGKKAINVNSININKLSELFGILNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182
              P    I       RR+FLD  +  +  ++   ++ +++++  RN LL +G  +  + 
Sbjct: 116 IFSPEDLSIVKESPSFRRKFLDIELSKLSKQYYYNLVQYQKVLNERNMLLKKGGDEVPNI 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-FDQSFC 241
               + Q+A  G  I   R + +  L+ +  +   +      ++S T     K  +    
Sbjct: 176 IGVYDEQLARFGSNIIREREKYLKKLNDIGKKIHLEITSDKEEISFTYLSSIKNKNMDDG 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            ++E + +++   R  D   R T +GPHR D +++  +   T ++GS G+Q+   + I  
Sbjct: 236 KIEEIFLQEIIKNRNSDIEKRYTSVGPHRDDFLININNVN-TRSYGSQGQQRTATLTIKF 294

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNE 360
           A   +I +  G  P+LLLD++ + LD  ++  +   + DI  Q  +T T  +++   L  
Sbjct: 295 ASLDIIKDEIGEYPVLLLDDVLSELDSSRQKYILSSIRDI--QTIITCTGIENIKKYLKN 352

Query: 361 TAKFMRISNHQAL 373
            AK  ++ N + +
Sbjct: 353 DAKIFKVENGECI 365


>gi|323694888|ref|ZP_08109038.1| DNA replication and repair protein recF [Clostridium symbiosum
           WAL-14673]
 gi|323500978|gb|EGB16890.1| DNA replication and repair protein recF [Clostridium symbiosum
           WAL-14673]
          Length = 360

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 155/374 (41%), Gaps = 19/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +  +RNY  L + FD    +  GDN  GKTNILE++   +  +  R +   ++
Sbjct: 1   MIIESLELKNYRNYKELHINFDPGTNVLYGDNAQGKTNILESVYVCATTKSHRGSKDREI 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              G   S      R + +    D+ +K         + + IN + I    EL   + + 
Sbjct: 61  IEFGEEESHIKMNIRKDDVPYRIDMHLK-----KNKTKGVAINGIAIHKASELFGVVNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    +      ERRRF+D  +  ++  +   ++ + +++  RN+LL E  F   + 
Sbjct: 116 FFSPEDLNLIKNGPAERRRFVDLELCQLNRLYVHSLVQYNKIILQRNKLLKEIAFRPEYE 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+   G ++   R + I+ ++ +I       +    +L +    + + D   
Sbjct: 176 EMLDIYDMQLVSYGRELIHYRNDFIDQMNGIIRNIHFNLSGGKEELEIRYEPNTEAD--- 232

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                   K L   R  D   + TL GPHR D+     +  I    GS G+Q+   + + 
Sbjct: 233 -----VLEKALKKSRMQDLRQKTTLTGPHRDDISFYVNNIDIR-KFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L+       PILLLD++ + LD  ++  L   ++ I + I  TG D        +
Sbjct: 287 LAEIELVKKIVKDYPILLLDDVLSELDSGRQEHLLSGISHIQTVITCTGLD-DFISHCFQ 345

Query: 361 TAKFMRISNHQALC 374
             K  ++ N    C
Sbjct: 346 IDKTFKVVNGTVDC 359


>gi|227508131|ref|ZP_03938180.1| recombination protein F [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227192360|gb|EEI72427.1| recombination protein F [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 373

 Score =  330 bits (846), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 162/375 (43%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K +++  FRNY    L F     +F+G+N  GKTN+LEAI  L+  R  R ++  ++
Sbjct: 1   MKLKDISLHNFRNYIDQTLQFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S +     A+++G        + +E       +  +IN +    +      L +  
Sbjct: 61  INWQSQT-----AQLKGTIQKQLGKVPIELDLGTKGKRAKINHLEQAKLSSYVGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    I  G    RR+F+D     +  R+      +++++R RNR L     +   D 
Sbjct: 116 FAPEDLSIVKGAPQVRRKFMDMEFGQMSNRYLYNSTQYKKILRQRNRYLRDLQHKIQSDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q++  G +I   R++++  L         + +     L+         +Q  
Sbjct: 176 VYLDVLSDQLSAYGAEIIYQRIQLLKKLEGFAKNVHTEISQGKEALTFLYQTAVPDEQLT 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   + +   K+  D ++ +     TL+GPHR DL      K +  + GS G+Q+   + 
Sbjct: 236 SIENIYQNLLKQFADIKEKEIQRGTTLLGPHRDDLKFAINKKEV-QSFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   L+   T   PILLLD++ + LD+ ++  L   + D   Q F+T T  S     
Sbjct: 295 VKLAEIDLMKEQTNEYPILLLDDVLSELDDYRQTHLLTAIQDK-VQTFLTTTSLSGVQQE 353

Query: 358 LNETAKFMRISNHQA 372
           L    K  RI+N + 
Sbjct: 354 LLSNPKIFRIANGKV 368


>gi|326202775|ref|ZP_08192642.1| LOW QUALITY PROTEIN: DNA replication and repair protein RecF
           [Clostridium papyrosolvens DSM 2782]
 gi|325986852|gb|EGD47681.1| LOW QUALITY PROTEIN: DNA replication and repair protein RecF
           [Clostridium papyrosolvens DSM 2782]
          Length = 372

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 100/376 (26%), Positives = 162/376 (43%), Gaps = 12/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  +RN+ + RLVF  +  I  GDNG GKTNILEAI   + GR  R A  +++
Sbjct: 1   MIVKSLVLKNYRNHTNTRLVFSDRFNIIYGDNGQGKTNILEAIYLCASGRSHRTAKDSEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  SF              DI IK     +     L+IN++ I+ +  L  +L    
Sbjct: 61  IKFGCDSFSINANVFNIGSLEKDIEIKY---YENQKNKLKINEIPIKKIGALMGNLYAVL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC- 183
             P    I      ERRRF+D  +  I P +   +    ++++ RN LL     +     
Sbjct: 118 FSPEDLFIVKQGPTERRRFVDITLSQIRPSYFYNLQQLTKILKQRNTLLKNINSNPKLMD 177

Query: 184 --SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQS 239
                  ++AE+   I  AR      LS+L             K+S           D  
Sbjct: 178 TVDIWNIRLAEVAASIITARRTFSKMLSNLAESQHNFLTEKSEKISFDYKCSFQITEDDD 237

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++  Y K L      D +   T +GPHR D  +    K++ +  GS G+Q+  ++ +
Sbjct: 238 KNKIQNLYIKSLEKTLSRDIILGYTTMGPHRDDYDIMVNGKSLKL-FGSQGQQRSAVLSL 296

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358
            +A   LI   T   P+LLLD++ + LD +++  L   + +   Q F+T T    F++ L
Sbjct: 297 KIAEIELIKRETEQYPVLLLDDVMSELDNNRQKYLMESIKE--VQTFVTCTSTEHFENLL 354

Query: 359 NETAKFMRISNHQALC 374
           +  + F +I      C
Sbjct: 355 SGESNFFKIVGGNIQC 370


>gi|182416742|ref|ZP_02624843.2| DNA replication and repair protein RecF [Clostridium butyricum
           5521]
 gi|237669606|ref|ZP_04529584.1| DNA replication and repair protein RecF [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379399|gb|EDT76894.1| DNA replication and repair protein RecF [Clostridium butyricum
           5521]
 gi|237654840|gb|EEP52402.1| DNA replication and repair protein RecF [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 360

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 167/371 (45%), Gaps = 14/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + ++ +RNY +L L       +F+GDN  GKTN+LEAI + +  +  R +   ++
Sbjct: 1   MYIKNIMLANYRNYETLSLELSKNVNVFIGDNAQGKTNVLEAIYYCAFAKSHRTSKDREL 60

Query: 65  TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++ S     + ++   DI+I    RD +  + +++N + +  + EL     + 
Sbjct: 61  INWKNDKAYISLLVGKDRLDKRIDINI---LRDGK--KAIKVNSIKVAKIGELFGTFNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   ++       RR+ LD  +  I+ ++   ++ + +++  RN LL    F+    
Sbjct: 116 MFSPEDLKVIKEAPNLRRKLLDMELSQINKKYYFNLVQYNKILNERNILLKSRNFNEDVL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+ +    I   R+E I+ ++    +  ++      ++      +          
Sbjct: 176 EVYDLQLVDYADYIISKRLEYIDKINFYGEKIHREITADKEEIKFKYSCNV----DLTNY 231

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           K  Y KKL D  K D     T +GPHR D  V   D       GS G+Q+  ++ +  + 
Sbjct: 232 KNNYLKKLQDNIKRDREKGLTSVGPHRDDFNVFLNDIDAK-TFGSQGQQRTAILTMKFSS 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA 362
            ++I   TG  P+LLLD++ + LD +++  +   +   G Q  +T T   V  D L++ A
Sbjct: 291 LKIIKEITGEYPVLLLDDVLSELDVNRKKYILSTIH--GIQTIITCTGIEVLSDYLDDNA 348

Query: 363 KFMRISNHQAL 373
           K   +S+ + L
Sbjct: 349 KIFNVSSGRIL 359


>gi|218134380|ref|ZP_03463184.1| hypothetical protein BACPEC_02274 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989765|gb|EEC55776.1| hypothetical protein BACPEC_02274 [Bacteroides pectinophilus ATCC
           43243]
          Length = 358

 Score =  329 bits (845), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 163/372 (43%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +N+ ++RNY  L +    +  I  GDN  GKTNILE++   +  +  R +   ++
Sbjct: 1   MIVKSINLKDYRNYELLNIELSDKTNIIYGDNAQGKTNILESMYVGATTKSHRGSKDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            R G        A ++ +    DI  +++    +   + + +N + ++   EL   + + 
Sbjct: 61  IRFGCDE-----AHIKMIVCRNDIDYRIDMHIKKNKAKGIAVNGIPLKRSVELFGIVNMV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180
           +  P    I      ERRRF+D  +  +D  +   ++ + +++  RN+LL +  F     
Sbjct: 116 FFSPEDLNIIKDGPAERRRFMDMELSQLDKVYVFNLMQYNKVLMQRNKLLKDIAFRPDSM 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+   G ++   R E +  L+ ++     K +    +L +            
Sbjct: 176 DTLDVWDMQLVRYGEEVIKGRTEFVIKLNDIVSRIHSKLSGGREELKIEYL--------P 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            A   E        R  D     T  GPH+ D+ + Y +      +GS G+Q+   + + 
Sbjct: 228 SADSGELGSCTASSRDKDIRFGATAYGPHKDDI-IFYINGNDVRKYGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L+  T    PILLLD++ + LDE+++N L   + DI + +  TG ++ + + ++ 
Sbjct: 287 LAEIELVRQTINDTPILLLDDVLSELDENRQNFLMESMGDIQTVVTCTGLEEFINNRISL 346

Query: 361 TAKFMRISNHQA 372
             K  ++ N   
Sbjct: 347 D-KVFKVVNGHV 357


>gi|27375938|ref|NP_767467.1| recombination protein F [Bradyrhizobium japonicum USDA 110]
 gi|27349076|dbj|BAC46092.1| DNA replication and repair protein [Bradyrhizobium japonicum USDA
           110]
          Length = 378

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 139/370 (37%), Positives = 208/370 (56%), Gaps = 3/370 (0%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FRNY +  L   A     VG NG GKTN +EAISFLSPGRG RRA+  DV 
Sbjct: 5   RIHRLTLTHFRNYRAAGLETAADMVALVGPNGAGKTNCIEAISFLSPGRGLRRATLEDVA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++  A+VEG  GLA +   +E    D    R  +I+   +        H+R+ 
Sbjct: 65  DNQGDGSWAVSAQVEGALGLATLGTGIEPPRADAAVSRRCRIDREPVNSAAAFGDHIRMV 124

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P+MD +F G + ERRRF DR+V AID  H  R+   ER +R RNRLL    +D  WC
Sbjct: 125 WLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRINALERSLRSRNRLLETRNYDDHWC 184

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242
            +IE + AEL V +   R +    L+ ++    Q   FP  +++L G+++     ++  +
Sbjct: 185 DAIERETAELAVAVAATRGQTAARLTGMLSARAQASAFPSAQIALDGWMENALLRETATS 244

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++ Y + L D R  D+++ RT  GPH +DL V Y  K +     STGEQK +L+G+ LA
Sbjct: 245 VEDRYRQILRDNRPRDAIAGRTTDGPHLTDLQVIYAPKGMPARDASTGEQKALLIGLVLA 304

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA L++  TG  P+LLLDE+ AHLD ++R ALF  +  +G+Q+++TG D + F  +    
Sbjct: 305 HATLVAEMTGIVPLLLLDEVVAHLDPNRRAALFEELKKLGAQVWLTGADPAAFAEIGAGG 364

Query: 363 KFMRISNHQA 372
           +   + + + 
Sbjct: 365 EVFDVESGRV 374


>gi|116628687|ref|YP_813859.1| recombination protein F [Lactobacillus gasseri ATCC 33323]
 gi|238853342|ref|ZP_04643722.1| DNA replication and repair protein RecF [Lactobacillus gasseri
           202-4]
 gi|311111573|ref|ZP_07712970.1| DNA replication and repair protein RecF [Lactobacillus gasseri
           MV-22]
 gi|122274315|sp|Q047F1|RECF_LACGA RecName: Full=DNA replication and repair protein recF
 gi|116094269|gb|ABJ59421.1| DNA replication and repair protein RecF [Lactobacillus gasseri ATCC
           33323]
 gi|238834030|gb|EEQ26287.1| DNA replication and repair protein RecF [Lactobacillus gasseri
           202-4]
 gi|311066727|gb|EFQ47067.1| DNA replication and repair protein RecF [Lactobacillus gasseri
           MV-22]
          Length = 374

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 159/376 (42%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    + +FRN+  L+  FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++
Sbjct: 1   MYLANFELKDFRNFKELKTDFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FA ++G    + + ++L+ R   + +   +N +  + +      +    
Sbjct: 61  IRFGSK-----FAGLQGRVHKSQLQVELKLRLTANGKKAWVNRLEQKKLSAYVGQMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +      + ++++ RN  L +       D 
Sbjct: 116 FSPEDLALVKGAPSVRRRFMDLEFGQINSEYLYFSSQYRQVLQQRNNYLKQLSIKKANDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+A +  +I   R++ I  L+S       + +    KL +      K     
Sbjct: 176 VFLDVLSDQLAGIAAEIISRRIKYIKKLNSYAKAAHSEISGQAEKLQIFYRPSVKEIIPE 235

Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
             ++  Y K +      R  +     TL GPHR DL     +K       S G+Q+ + +
Sbjct: 236 DNVETIYRKVITSYKKNRPNEIRKGTTLSGPHRDDLEFLINEKN-AHDFASQGQQRTISL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +L+   T   PILLLD++ + LD  +++ L   +    +Q F+T TD      
Sbjct: 295 SVKLAEIQLVHELTQEYPILLLDDVMSELDHRRQSRLLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  K   IS    
Sbjct: 354 EIVKEPKVYHISAGTI 369


>gi|126697570|ref|YP_001086467.1| DNA replication and repair protein [Clostridium difficile 630]
 gi|254977346|ref|ZP_05273818.1| DNA replication and repair protein [Clostridium difficile
           QCD-66c26]
 gi|255094676|ref|ZP_05324154.1| DNA replication and repair protein [Clostridium difficile CIP
           107932]
 gi|255102903|ref|ZP_05331880.1| DNA replication and repair protein [Clostridium difficile
           QCD-63q42]
 gi|255308723|ref|ZP_05352894.1| DNA replication and repair protein [Clostridium difficile ATCC
           43255]
 gi|255316430|ref|ZP_05358013.1| DNA replication and repair protein [Clostridium difficile
           QCD-76w55]
 gi|255519090|ref|ZP_05386766.1| DNA replication and repair protein [Clostridium difficile
           QCD-97b34]
 gi|255652273|ref|ZP_05399175.1| DNA replication and repair protein [Clostridium difficile
           QCD-37x79]
 gi|260681773|ref|YP_003213058.1| DNA replication and repair protein [Clostridium difficile CD196]
 gi|306521987|ref|ZP_07408334.1| DNA replication and repair protein [Clostridium difficile
           QCD-32g58]
 gi|123363673|sp|Q18C86|RECF_CLOD6 RecName: Full=DNA replication and repair protein recF
 gi|115249007|emb|CAJ66818.1| DNA replication and repair protein RecF [Clostridium difficile]
 gi|260207936|emb|CBA60047.1| DNA replication and repair protein [Clostridium difficile CD196]
          Length = 371

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 171/374 (45%), Gaps = 11/374 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  FRNY  L L F+ +  + VG NG GKTNI+E+I  LS G+ FR     ++
Sbjct: 1   MKLKSLQLVNFRNYKKLHLEFNGKVNLLVGKNGQGKTNIVESIYMLSFGKSFRTNKDKEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S + +     + G     +    +E    +  + ++IN V ++ + EL  +L +  
Sbjct: 61  VRFNSENLY-----IGGSFSKYNKYSLIELIIGKDKKGIRINKVPLQKIQELLGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   R+      ERR F+D+ +  I P++ + + ++ + +  R+R+L   + D +   
Sbjct: 116 FSPEDLRLVKEGPKERRAFIDKEISQIIPKYYKYLTNYNKTLSQRSRVLKNIHVDEALLD 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYV--QKENFPHIKLSLTGFLDGKFDQSFCA 242
             +  +A+ G  I I R + I  ++++              + +     ++   + +   
Sbjct: 176 VYDDTLAKYGSYIYILRRDFIKKIANISENMHMNLTNGVERLSIRYKNQINITDEDTIDT 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +  ++  KL   R  D  S+ T  G H+ DL +   D    +  GS G+Q+   + + L+
Sbjct: 236 VYNKFLAKLSSNRPNDIESKTTRYGIHKDDLNIFINDLDARL-FGSQGQQRTASISLKLS 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE-T 361
              LI N     P+L+LD++ + LDE ++  L   ++    Q+F+T  + S     +E  
Sbjct: 295 EIELIKNEVEEYPVLILDDVFSELDEARQKLLVNNLS--NVQMFITSAEVSHKKIFDEKN 352

Query: 362 AKFMRISNHQALCI 375
                I N   + I
Sbjct: 353 VTIFNIENGDVISI 366


>gi|312869203|ref|ZP_07729375.1| DNA replication and repair protein RecF [Lactobacillus oris
           PB013-T2-3]
 gi|311095224|gb|EFQ53496.1| DNA replication and repair protein RecF [Lactobacillus oris
           PB013-T2-3]
          Length = 373

 Score =  329 bits (843), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 148/376 (39%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRNY    + F     + +G N  GKTN+LEAI  LS  R  R  +  ++
Sbjct: 1   MILSELHLHHFRNYEDQTVHFAPGVNVLIGHNAQGKTNMLEAIYALSLTRSHRTNNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S F     + G+   A   + LE +  +  +  ++N +    + +    L    
Sbjct: 61  INWQEKSAF-----ISGVVQKASGRVPLELQFTKEGKRAKVNHLEQARLAQYIGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     +  ++      +  L+R RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGAPAVRRRFMDMEFSQMSSKYLYNASQYRSLLRQRNKYLKQLKYGQQHDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
                +  Q+A  G ++ +AR   +  L     +   + +    KL L     L    + 
Sbjct: 176 VLLDVLSDQLAAYGAELVVARFHFLQQLEKWAADLHYQISLNAEKLRLVYATQLKVTAET 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +     ++      + +  +     T+ GP R D+      K +  + GS G+Q+   + 
Sbjct: 236 TVDDAYQQLLTIFKENKAREIDQGSTMFGPQRDDIRFLVNGKNV-QSFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+   TG  P+LLLD++ + LD  ++  L   + D   Q F+T T  S     
Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDTVRQTHLLTAIQDK-VQTFLTTTSLSDVARQ 353

Query: 358 LNETAKFMRISNHQAL 373
           L        I N   +
Sbjct: 354 LINEPTIFNIKNGTLI 369


>gi|325663386|ref|ZP_08151836.1| hypothetical protein HMPREF0490_02577 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086960|ref|ZP_08336036.1| hypothetical protein HMPREF0987_02339 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470840|gb|EGC74070.1| hypothetical protein HMPREF0490_02577 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330409621|gb|EGG89060.1| hypothetical protein HMPREF0987_02339 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 361

 Score =  328 bits (842), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 96/370 (25%), Positives = 163/370 (44%), Gaps = 19/370 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  FRNY  L + FD    IF GDN  GKTNILEA+      +  R     D+
Sbjct: 1   MVIKSLKLKNFRNYDFLSIEFDHATNIFYGDNAQGKTNILEAVYLTGTTKSHRGTKDRDL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G   S   T    +G+E   D+ +K       S + + IN + IR   EL   + + 
Sbjct: 61  IQFGNEESHIETVIEKDGIEFQVDMHLK-----KNSPKGIAINKIPIRKASELFGLVHLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180
           +  P    I      ERRRF+D  +  +D  +   + ++ R++  RNRLL +    +   
Sbjct: 116 FFSPEDLNIIKNGPAERRRFMDLELSQLDKVYLSDLANYNRIINQRNRLLKDCQNRAELN 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ + G +I   R + +  ++ +I     K       ++++   +       
Sbjct: 176 EMLDLWDMQLIQYGSRIMERREKFLEEVNEIISGIHYKLTGGRETITISYEKNIG----- 230

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              + E+   L   R+ D   + T  GPHR D+     D  I    GS G+Q+   + + 
Sbjct: 231 ---QMEFESVLKKNRERDIRMKSTSAGPHRDDICFLTKDIDIR-KFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   ++       P+LLLD++ + LD++++N L   + DI + I  TG D+ V    + 
Sbjct: 287 LSEIEIVRKLIKDTPVLLLDDVLSELDKNRQNYLLDSIHDIQTLITCTGVDEFVNHRFSI 346

Query: 361 TAKFMRISNH 370
             K   +SN 
Sbjct: 347 N-KIFHVSNG 355


>gi|227511155|ref|ZP_03941204.1| recombination protein F [Lactobacillus buchneri ATCC 11577]
 gi|227085637|gb|EEI20949.1| recombination protein F [Lactobacillus buchneri ATCC 11577]
          Length = 373

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 161/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++K + +  FRNY    L F     +F+G+N  GKTN+LEAI  L+  R  R ++  ++
Sbjct: 1   MRLKDIALHNFRNYIDQTLQFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S +     A+++G        + +E       +  +IN +    +      L +  
Sbjct: 61  INWQSQT-----AQLKGTIQKQLGKVPIELDLGTKGKRAKINHLEQAKLSSYVGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    I  G    RR+F+D     +  R+      +++++R RNR L     +   D 
Sbjct: 116 FAPEDLSIVKGAPQVRRKFMDMEFGQMSNRYLYNSTQYKKILRQRNRYLRDLQHKIQSDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q++  G +I   R++++  L         + +     L+         +Q  
Sbjct: 176 VYLDVLSDQLSAYGAEIIYQRIQLLKKLEGFAKNVHTEISQGKEALTFLYQTAVPDEQLT 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   + +   K+  D ++ +     TL+GPHR DL      K +  + GS G+Q+   + 
Sbjct: 236 SIENIYQNLLKQFADIKEKEIQRGTTLLGPHRDDLKFAINKKEV-QSFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   L+   T   PILLLD++ + LD+ ++  L   + D   Q F+T T  S     
Sbjct: 295 VKLAEIDLMKEQTNEYPILLLDDVLSELDDYRQTHLLTAIQDK-VQTFLTTTSLSGVQQE 353

Query: 358 LNETAKFMRISNHQA 372
           L    K  RI+N + 
Sbjct: 354 LLSNPKIFRIANGKV 368


>gi|291526543|emb|CBK92130.1| recF protein [Eubacterium rectale DSM 17629]
 gi|291529186|emb|CBK94772.1| recF protein [Eubacterium rectale M104/1]
          Length = 362

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 161/375 (42%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + +S FRNY  L + FD++  I  GDN  GKTNILEA       +  + +   ++
Sbjct: 1   MIIKSIQLSNFRNYEKLDISFDSETNIIYGDNAQGKTNILEAAYLSGTTKSHKGSKDKEM 60

Query: 65  TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G       T       E   D+ ++         + + IN + I+   EL   L I 
Sbjct: 61  IRFGEDEAHIRTIVEKNDKEYRIDMHLR-----KNGAKGVAINKMPIKKASELFGILNIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    I      ERRRF+D  +  +D  +   +  + + +  RNRLL +  +     
Sbjct: 116 FFSPEDLNIIKNGPAERRRFIDLELCQLDKIYLSNLSKYNKTLVQRNRLLKDIAYRPDLI 175

Query: 184 S---SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ E G  +   R E +N L+ +I +     +    KL L      K++ S 
Sbjct: 176 DTLQVWDMQLLEYGRHVIKKRREFVNELNEIIQDIHSNISGGREKLIL------KYEPSI 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +   +  +L   R  D    +T +GPHR D++    D      +GS G+Q+   + + 
Sbjct: 230 DDIF--FEDELLKARSRDLKLCQTTVGPHRDDMLFSV-DGVDIRKYGSQGQQRTSALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+       P+LLLD++ + LD +++N L   ++D  + I  TG D+ V +    
Sbjct: 287 LSEISLVKKNINSTPVLLLDDVLSELDGNRQNYLLNSLSDTQTIITCTGLDEFVKNRFQV 346

Query: 361 TAKFMRISNHQALCI 375
             K   +   Q   I
Sbjct: 347 D-KVFHVVKGQVEVI 360


>gi|330447267|ref|ZP_08310917.1| ssDNA and dsDNA binding, ATP binding [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491458|dbj|GAA05414.1| ssDNA and dsDNA binding, ATP binding [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 360

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 161/369 (43%), Gaps = 13/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN  +  L         VG NG GKT++LEAI +L  GR FR    + V
Sbjct: 1   MALTRLMVHDFRNIEACDLALATGFNFLVGANGSGKTSVLEAIHYLGHGRSFRSHLTSRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      F    RV   +    + I L  + D +   ++I     + V +L + L +  
Sbjct: 61  IRHEQSELF-IHGRVVDNQTQLMLPIGLNKKRDGTT-EVKIAGEPNQKVAQLAQILPLQL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +  G    RR F+D  VF ++P+        +RL + RN LL          S
Sbjct: 119 ITPEGFDLLIGGPKYRRAFIDWGVFHVEPKFYHAWSRLKRLTKQRNALLKTARSYRE-LS 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I++ R + I+A+     E  Q    P  ++ L  +   + +       
Sbjct: 178 YWDQELALLAEQISVWRQDYISAVKEKAAEIFQ-VFLPEYEIQLGYYRGWEKETP----- 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T  GPH++DL +      +     S G+ K+++  + LA  
Sbjct: 232 --YAELLKRNFERDCQLGYTASGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-DKSVFDSLNETAK 363
             ++  TG   I L+D+ ++ LD  +R  L + + +  +Q+F++   D  V D L+E  K
Sbjct: 289 LHLTEATGKQCIYLIDDFASELDSHRRALLAQRLKETNAQVFISAISDDQVADMLDENGK 348

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 349 LFHVEHGKI 357


>gi|300362675|ref|ZP_07058851.1| recombination protein F [Lactobacillus gasseri JV-V03]
 gi|300353666|gb|EFJ69538.1| recombination protein F [Lactobacillus gasseri JV-V03]
          Length = 374

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 158/376 (42%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    + +FRN+  L+  FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++
Sbjct: 1   MYLANFELKDFRNFKELKTNFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FA ++G    + + ++L+ R   + +   +N +  + +      +    
Sbjct: 61  IRFGSK-----FAGLQGRVHKSQLQVELKLRLTANGKKAWVNRLEQKRLSAYVGQMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +      + ++++ RN  L +       D 
Sbjct: 116 FSPEDLALVKGAPSVRRRFMDLEFGQINSEYLYFSSQYRQVLQQRNNYLKQLSIKKANDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+A +  +I   R++ I  L+S       + +    KL +      K     
Sbjct: 176 VFLDVLSDQLAGIAAEIISRRIKYIKKLNSYAQAAHSEISGQAEKLQIFYRPSVKEIIPE 235

Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
             ++  Y K +      R  +     TL GPHR DL     DK       S G+Q+ + +
Sbjct: 236 DDVETIYQKVITSYKKNRSNEIRKGTTLSGPHRDDLEFLINDKN-AHDFASQGQQRTISL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +L+       PILLLD++ + LD  +++ L   +    +Q F+T TD      
Sbjct: 295 SVKLAEIQLVHELKQEYPILLLDDVMSELDHRRQSRLLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  K   IS    
Sbjct: 354 EIVKEPKVYHISAGTI 369


>gi|197302272|ref|ZP_03167331.1| hypothetical protein RUMLAC_00999 [Ruminococcus lactaris ATCC
           29176]
 gi|197298703|gb|EDY33244.1| hypothetical protein RUMLAC_00999 [Ruminococcus lactaris ATCC
           29176]
          Length = 370

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 155/374 (41%), Gaps = 19/374 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
             + I+ L +  +RNY  L + FD +  I  GDN  GKTNILEA+      +  R     
Sbjct: 8   TDMVIRSLRLKNYRNYDLLDMSFDPKTNILYGDNAQGKTNILEALYLSGTTKSHRGTKDR 67

Query: 63  DVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           D+ + G            +G+    D+ +K       S + + I+ + IR   EL   + 
Sbjct: 68  DMIQFGHDEAHLEMVVEKKGLTFQIDMHLK-----KNSPKGIAIDRIPIRKASELFGIVH 122

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
             +  P    I       RRRF+D  +  +D  +   + ++ R++  RN LL + Y   +
Sbjct: 123 FVFFSPEDLNIIKEGPAGRRRFIDLELSQLDKIYLSNLTNYNRIINQRNALLKDIYNHQN 182

Query: 182 W---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                   + Q+AE G ++   R + I  ++ +I +   +      ++ L+         
Sbjct: 183 LAETLDIWDMQLAEYGTRVLERRQQFIEQVNGIISDIHYRLTGGKERICLSYESGTGGR- 241

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                     + L   R  D   + T +GPHR D+     +  I    GS G+Q+   + 
Sbjct: 242 -------SLEEALKRNRDRDLRMKSTSVGPHRDDICFLSGELDIR-KFGSQGQQRTTALS 293

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA   L+       P+LLLD++ + LD+ ++N L   + DI + +  TG D+ V    
Sbjct: 294 LKLAEIELVKQMIKDTPVLLLDDVLSELDKSRQNYLLDSIHDIQTVVTCTGLDEFVNHRF 353

Query: 359 NETAKFMRISNHQA 372
           +   K   I +   
Sbjct: 354 SIN-KVFHIQDGTV 366


>gi|238922436|ref|YP_002935949.1| DNA replication and repair protein RecF [Eubacterium rectale ATCC
           33656]
 gi|259563365|sp|C4Z940|RECF_EUBR3 RecName: Full=DNA replication and repair protein recF
 gi|238874108|gb|ACR73815.1| DNA replication and repair protein RecF [Eubacterium rectale ATCC
           33656]
          Length = 362

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 95/375 (25%), Positives = 160/375 (42%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + +S FRNY  L + FD +  I  GDN  GKTNILEA       +  + +   ++
Sbjct: 1   MIIKSIQLSNFRNYEKLDISFDTETNIIYGDNAQGKTNILEAAYLSGTTKSHKGSKDKEM 60

Query: 65  TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G       T       E   D+ ++         + + IN + I+   EL   L I 
Sbjct: 61  IRFGEDEAHIRTIVEKNDKEYRIDMHLR-----KNGAKGVAINKMPIKKASELFGILNIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    I      ERRRF+D  +  +D  +   +  + + +  RNRLL +  +     
Sbjct: 116 FFSPEDLNIIKNGPAERRRFIDLELCQLDKIYLSNLSKYNKTLVQRNRLLKDIAYRPDLI 175

Query: 184 S---SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ E G  +   R E +N L+ +I +     +    KL L      K++ S 
Sbjct: 176 DTLQVWDMQLLEYGRHVIKKRREFVNELNEIIQDIHSNISGGREKLIL------KYEPSI 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +   +  +L   R  D    +T +GPHR D++    D      +GS G+Q+   + + 
Sbjct: 230 DDIF--FEDELLKARSRDLKLCQTTVGPHRDDMLFSV-DGVDIRKYGSQGQQRTSALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+       P+LLLD++ + LD +++N L   ++D  + I  TG D+ V +    
Sbjct: 287 LSEISLVKKNINSTPVLLLDDVLSELDGNRQNYLLNSLSDTQTIITCTGLDEFVKNRFQV 346

Query: 361 TAKFMRISNHQALCI 375
             K   +   Q   I
Sbjct: 347 D-KVFHVVKGQVEVI 360


>gi|331700399|ref|YP_004397358.1| DNA replication and repair protein recF [Lactobacillus buchneri
           NRRL B-30929]
 gi|329127742|gb|AEB72295.1| DNA replication and repair protein recF [Lactobacillus buchneri
           NRRL B-30929]
          Length = 372

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 158/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + +  FRNY    L F     +F+G+N  GKTN+LEAI  L+  R  R  +  ++
Sbjct: 1   MKLTEIELHNFRNYVDQTLEFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTNNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S +     A+++G       ++ +E       +  ++N +    +      L +  
Sbjct: 61  INWNSQT-----AQIKGRLQKRLGTVPIELDLGSKGKRAKVNHLEQAKLSTYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    I  G    RRRF+D     +  R+      ++++++ RNR L     +   D 
Sbjct: 116 FAPEDLSIVKGAPQVRRRFMDMEFAQMSNRYLYNSTQYKKILKQRNRYLKDLHYKRQKDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q++  G +I   R++++  L         + +    +L+       + DQ  
Sbjct: 176 VYLDVLSDQLSAYGAEIVYQRLQLLKQLEKFAQNVHSEISQGKEQLAFDYHTTVEADQLG 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S  ++ +   K     +  + +   TLIGP R DL      K +  + GS G+Q+   + 
Sbjct: 236 SVESIYQSLLKHFAAIKDKEILRSTTLIGPQRDDLHFVINGKEV-QSFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   L+   T   PILLLD++ + LD+ ++  L   + D   Q F+T T  S     
Sbjct: 295 VKLAEIDLMKEQTDEYPILLLDDVLSELDDFRQTHLLTAIQDK-VQTFLTTTSLSGVQQE 353

Query: 358 LNETAKFMRISNHQA 372
           L    +  RIS    
Sbjct: 354 LLTNPRIFRISEGNV 368


>gi|225575694|ref|ZP_03784304.1| hypothetical protein RUMHYD_03787 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037098|gb|EEG47344.1| hypothetical protein RUMHYD_03787 [Blautia hydrogenotrophica DSM
           10507]
          Length = 361

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 94/373 (25%), Positives = 155/373 (41%), Gaps = 21/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  FRNY SL L FD    I  GDN  GKTN+LEA+      +  + +   ++
Sbjct: 1   MYIESVQLKNFRNYQSLELEFDQGTNILFGDNAQGKTNVLEAVYLCGTTKSHKGSKDREM 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  S      + E +    D+ +K         + + IN + I+   EL   +   
Sbjct: 61  IHFDEEESHIRMIVKKEHISYKIDMHLK-----KNKAKGIAINGIPIKKARELFGIVNFV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRFLD  +  +D  +   + ++ R++  RN+LL +  F     
Sbjct: 116 FFSPEDLNIIKNGPGERRRFLDMELCQLDRIYLNDLANYNRIVNQRNKLLKDLAFQPELQ 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                   Q+A  G KI   R   +  L+ LI +  Q       KL +T   + +     
Sbjct: 176 DTMDIWNQQLASHGKKIIEKRYSFVKELNELIQKIHQNLTGGTEKLEVTYEPNVE----- 230

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                 +  +L    + D   R T +GPHR DL V      I   +GS G+Q+   + + 
Sbjct: 231 ---SNNFEGELQRQNRRDMQLRTTTVGPHRDDLCVTVNGIDIR-RYGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359
           LA   L+       P+LLLD++ + LD +++N L   + DI  Q  +T T    F +   
Sbjct: 287 LAEIYLVKKLIKDTPVLLLDDVLSELDRNRQNYLLDSIHDI--QTLITCTGLDDFVNHQF 344

Query: 360 ETAKFMRISNHQA 372
           +  K  ++     
Sbjct: 345 QINKVFKVIKGNV 357


>gi|255657642|ref|ZP_05403051.1| DNA replication and repair protein [Clostridium difficile
           QCD-23m63]
 gi|296452677|ref|ZP_06894368.1| recombination protein F [Clostridium difficile NAP08]
 gi|296880070|ref|ZP_06904039.1| recombination protein F [Clostridium difficile NAP07]
 gi|296258459|gb|EFH05363.1| recombination protein F [Clostridium difficile NAP08]
 gi|296428937|gb|EFH14815.1| recombination protein F [Clostridium difficile NAP07]
          Length = 371

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 170/374 (45%), Gaps = 11/374 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  FRNY  L L F+ +  + VG NG GKTNI+E+I  LS G+ FR     ++
Sbjct: 1   MKLKSLQLVNFRNYKKLHLEFNGKVNLLVGKNGQGKTNIVESIYMLSFGKSFRTNKDKEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S + +     + G     +    +E    +  + +++N V ++ + EL  +L +  
Sbjct: 61  VRFNSENLY-----IGGSFSKYNKYSLIELIIGKDKKGIRVNKVPLQKIQELLGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   R+      ERR F+D+ +  I P++ + + ++ + +  R+R+L   + D +   
Sbjct: 116 FSPEDLRLVKEGPKERRTFIDKEISQIIPKYYKYLTNYNKTLSQRSRVLKSIHVDEALLD 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYV--QKENFPHIKLSLTGFLDGKFDQSFCA 242
             +  +A  G  I I R + I  ++S+              + +     ++   + +   
Sbjct: 176 VYDDTLARYGSYIYILRRDFIKKIASISENMHMNLTNGVERLSIRYKNQINITDEDTIDT 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +  ++  KL   R  D  S+ T  G H+ DL +   D    +  GS G+Q+   + + L+
Sbjct: 236 VYNKFLAKLSSNRPNDIESKTTRYGIHKDDLNIFINDLDARL-FGSQGQQRTASISLKLS 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE-T 361
              LI N     P+L+LD++ + LDE ++  L   ++    Q+F+T  + S     +E  
Sbjct: 295 EIELIKNEVEEYPVLILDDVFSELDEARQKLLVNNLS--NVQMFITSAEISHKKIFDEKN 352

Query: 362 AKFMRISNHQALCI 375
                I N   + I
Sbjct: 353 VTIFNIENGDVISI 366


>gi|255527583|ref|ZP_05394447.1| DNA replication and repair protein RecF [Clostridium
           carboxidivorans P7]
 gi|296186781|ref|ZP_06855182.1| DNA replication and repair protein RecF [Clostridium
           carboxidivorans P7]
 gi|255508716|gb|EET85092.1| DNA replication and repair protein RecF [Clostridium
           carboxidivorans P7]
 gi|296048495|gb|EFG87928.1| DNA replication and repair protein RecF [Clostridium
           carboxidivorans P7]
          Length = 363

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 163/369 (44%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK+L +  FRNY  L +  +    +F+G+N  GKTNILE+I + S G+  R     ++
Sbjct: 1   MYIKYLQLINFRNYKELNIELNKNINVFIGNNAQGKTNILESIYYCSIGKSPRTNKDKEL 60

Query: 65  TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               G  ++   +   + ++   +I I  E       + + +N + +  + +L     + 
Sbjct: 61  INWNGKEAYIKLYVSKDRIDKKIEIKIFKE-----GKKGVNVNSIKVNKISDLMGVFNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182
              P   +I       RR+FLD  +  +  ++   ++ + +++  RN +L +    +   
Sbjct: 116 MFSPEDLKIVKESPSHRRKFLDIELCKLSKKYYFNLVQYNKVLNERNVVLRKWDKKNLDM 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+A+ G  I   R   +  L+   +   +        +        K   S   
Sbjct: 176 LQVYDEQLAKYGAYIVKTRDHYVKKLTEKGIIIHKNITSGSENIEFNYITGVK---SIDN 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            +EE    L + R  D   R T  GPHR D  +   +   T ++GS G+Q+  ++ I  A
Sbjct: 233 SEEEILNLLENNRLKDFEKRITSFGPHRDDFSIKI-NGVDTRSYGSQGQQRTSVLTIKFA 291

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNET 361
              +I  T G  P+LLLD++ + LD +++  +   ++DI  Q F+T T  + + ++L + 
Sbjct: 292 SLEIIKETIGEYPVLLLDDVLSELDSNRQKYILNSISDI--QTFITCTGIEDIKNNLKKD 349

Query: 362 AKFMRISNH 370
           ++   +   
Sbjct: 350 SQLFVVEKG 358


>gi|227523342|ref|ZP_03953391.1| recombination protein F [Lactobacillus hilgardii ATCC 8290]
 gi|227089448|gb|EEI24760.1| recombination protein F [Lactobacillus hilgardii ATCC 8290]
          Length = 373

 Score =  328 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 161/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++K + +  FRNY    L F     +F+G+N  GKTN+LEAI  L+  R  R ++  ++
Sbjct: 1   MRLKDIALHNFRNYIDQTLQFSDGINVFLGENAQGKTNLLEAIYVLALTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S +     A+++G        + +E       +  +IN +    +      L +  
Sbjct: 61  INWQSQT-----AQLKGTIQKQLGKVPIELDLGTKGKRAKINHLEQAKLSSYVGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    I  G    RR+F+D     +  R+      +++++R RNR L     +   D 
Sbjct: 116 FAPEDLSIVKGAPQVRRKFMDMEFGQMSNRYLYNSTQYKKILRQRNRYLRDLQHKIQSDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q++  G +I   R++++  L         + +     L+         +Q  
Sbjct: 176 VYLDVLSDQLSAYGAEIIYQRIQLLKKLEGFAKNVHTEISQGKEALTFLYQTVVPDEQLT 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   + +   K+  D ++ +     TL+GPHR DL      K +  + GS G+Q+   + 
Sbjct: 236 SIENIYQNLLKQFADIKEKEIQRGTTLLGPHRDDLKFAINKKEV-QSFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   L+   T   PILLLD++ + LD+ ++  L   + D   Q F+T T  S     
Sbjct: 295 VKLAEIDLMKEQTNEYPILLLDDVLSELDDYRQTHLLTAIQDK-VQTFLTTTSLSGVQQE 353

Query: 358 LNETAKFMRISNHQA 372
           L    K  RI+N + 
Sbjct: 354 LLSNPKIFRIANGKV 368


>gi|150014896|ref|YP_001307150.1| recombination protein F [Clostridium beijerinckii NCIMB 8052]
 gi|189039620|sp|A6LPB4|RECF_CLOB8 RecName: Full=DNA replication and repair protein recF
 gi|149901361|gb|ABR32194.1| DNA replication and repair protein RecF [Clostridium beijerinckii
           NCIMB 8052]
          Length = 367

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 170/371 (45%), Gaps = 12/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +N+  +RNY  L +       +FVGDN  GKTNILE++ + +  +  R +   ++
Sbjct: 1   MYVKNINLLNYRNYKKLSVELTENVNVFVGDNAQGKTNILESVYYCAFAKSHRTSKDKEL 60

Query: 65  TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                S ++ S       ++   DI+I    RD +  + +++N++ +  + EL     + 
Sbjct: 61  INWENSTAYISLLIGKNRLDKKIDINI---LRDGK--KAIKVNNIKVNKIGELFGIFNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   ++       RRR LD  +  ++P +   ++ + +++  RN LL    F     
Sbjct: 116 MFSPEDLKVIKEAPSLRRRLLDMELSQVNPNYYFNLVQYNKVLGERNILLKSRSFSEDIL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+++    I   R+E IN ++       ++      +++         +      
Sbjct: 176 DVYDIQLSKYADYIISKRLEYINKINFYGDIIHREITSGKEEINFKYNCTVNLENG--KF 233

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           K+ Y KKL D  + D     T +GPHR D  V   +    I  GS G+Q+  ++ +  A 
Sbjct: 234 KDNYLKKLKDNIQKDREKGLTSVGPHRDDFSVFINNIDTKI-FGSQGQQRTSILTMKFAS 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362
            ++I   TG  P+LLLD++ + LD +++  + R + DI  Q  +T    + + D L++  
Sbjct: 293 LKIIREITGEYPVLLLDDVLSELDLNRKKYILRSIKDI--QTIITCAGIEDLNDYLDDKV 350

Query: 363 KFMRISNHQAL 373
           K   +SN Q L
Sbjct: 351 KIFNVSNGQIL 361


>gi|307243415|ref|ZP_07525572.1| putative recombination protein F [Peptostreptococcus stomatis DSM
           17678]
 gi|306493225|gb|EFM65221.1| putative recombination protein F [Peptostreptococcus stomatis DSM
           17678]
          Length = 371

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 179/374 (47%), Gaps = 11/374 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +RNY  L + F+ +  + +G NG GKTN++EAI F+S GR FR     ++
Sbjct: 1   MYINSLKLVNYRNYDDLLVEFNKKVNLIIGMNGQGKTNLVEAIGFMSIGRSFRTNKDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  + + +             ++  K+E    +  + +++N V I+ + EL  +L +  
Sbjct: 61  IKFSAENLYCGC-----NFTRNNMDKKIEIVVAKDKKGVKVNGVSIKSMQELLGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   R+      ERR F+D+ +  I PR+   + ++ +++  RN +L     D +   
Sbjct: 116 FSPEDLRLVKDGPKERRSFIDKEISQIMPRYYSLLTNYNKILHQRNTVLKSYRIDENLLD 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQSFCA 242
             +  M+    +I + R + I  +S +  E  +        L++     +D +  Q    
Sbjct: 176 VYDETMSTYASEIYLIRNKFIEKISKISSEIHKNLTMDKENLTIIYKNQVDLESGQDASQ 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++ +  +KL + R  D ++R T +GPH+ D+ +   D  + + +GS G+Q+   + + L+
Sbjct: 236 VRLKLLEKLRESRGGDMITRTTKVGPHKDDMKIFINDIDVRM-YGSQGQQRTASISLKLS 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ET 361
              LI    G  P+L+LD++ + LD+ ++  L   + DI  Q+F+T  D    + L+ + 
Sbjct: 295 EIELIKQEVGDYPVLILDDVFSELDQTRQKMLVEKLEDI--QMFVTSADPLHKNILDIDD 352

Query: 362 AKFMRISNHQALCI 375
                I N + + +
Sbjct: 353 YSIFNIENGRLVGV 366


>gi|167748046|ref|ZP_02420173.1| hypothetical protein ANACAC_02784 [Anaerostipes caccae DSM 14662]
 gi|167652526|gb|EDR96655.1| hypothetical protein ANACAC_02784 [Anaerostipes caccae DSM 14662]
          Length = 361

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 163/373 (43%), Gaps = 19/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +  +RNY  L + F +   I  GDN  GKTNILEA+   +  +  R +   ++
Sbjct: 1   MYIQSLELKNYRNYDRLIIEFSSGTNILYGDNAQGKTNILEAVYLGATTKSHRGSKDKEI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G      +  R+  M+      I +  +  R+ +   I+ + I+   +L   + + +
Sbjct: 61  IRFGENE---SHIRIHLMKQDIGHQIDMHLKKSRT-KGAAIDRIPIKRSSDLLGFVPVIF 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    I      ERR+FLD  +  ++  +  ++  + R+M  RN LL +  +      
Sbjct: 117 FSPEDLSIIKNGPSERRKFLDIELSQLEKMYLHQLSSYNRVMAQRNNLLKQLAYQRELLD 176

Query: 185 S---IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           +    + Q+ + G ++   R + I  L+ +I E  +       K+ L       +D    
Sbjct: 177 TLDSWDLQLVKYGSEVIRYRQKFIEDLNEIIREIHKNLTGKKEKIVLKYDYSVNYD---- 232

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
               E+   L   R++D     T  GPHR D+        I    GS G+Q+   + + L
Sbjct: 233 ----EFLTVLQRKREIDLKYASTGAGPHRDDIEFLVNGIDIR-KFGSQGQQRTAALSLKL 287

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNE 360
           A   L+   TG  PILLLD++ + LD  ++N L   + DI  Q  +T T    F +S  +
Sbjct: 288 AQIELVKRQTGETPILLLDDVLSELDSSRKNYLLDSIKDI--QTLITCTGLEEFINSHLQ 345

Query: 361 TAKFMRISNHQAL 373
             K  ++ + + +
Sbjct: 346 IDKMFQVKSGKIV 358


>gi|253581084|ref|ZP_04858344.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847620|gb|EES75590.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 361

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 93/373 (24%), Positives = 154/373 (41%), Gaps = 21/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  FRNY SL L       IF G+N  GKTNILEA+      +  + +   D+
Sbjct: 1   MYIESVQLKNFRNYDSLELDLAQGTNIFYGNNAQGKTNILEALYLCGTTKSHKGSRDKDM 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G   S      + + +    D+ +K         + + IN + IR   EL   + + 
Sbjct: 61  IQFGKDESHIRMMVKRDELSYRIDMHLK-----KNKAKGVAINGLPIRKASELFGVVNLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRFLD  +  +D  +   +  +  ++  RN+LL +     S  
Sbjct: 116 FFSPEDLNIIKNGPGERRRFLDLELCQLDKIYLTDLASYNHIVNQRNKLLKDLSVQPSLK 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + QMAE G KI   R E I  L+  + +          +L++    D       
Sbjct: 176 DTLDIWDIQMAEYGRKIIDKRSEFIKELNETVRKIHGNLTGGLEELNVIYEPD------- 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E+    +   R+ D   R T  GPHR DL V      I   +GS G+Q+   + + 
Sbjct: 229 -CTAEKLESTICANRERDMRMRLTSAGPHRDDLCVMANGIDIR-KYGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359
           L+   ++       P+LLLD++ + LD  ++N L   ++DI  Q  +T T    F     
Sbjct: 287 LSEIYIVKRKIKDTPVLLLDDVLSELDSSRQNYLLDSISDI--QTLITCTGLDDFISHQF 344

Query: 360 ETAKFMRISNHQA 372
           +  K  ++     
Sbjct: 345 QINKVFQVVQGTV 357


>gi|153007350|ref|YP_001368565.1| recombination protein F [Ochrobactrum anthropi ATCC 49188]
 gi|151559238|gb|ABS12736.1| DNA replication and repair protein RecF [Ochrobactrum anthropi ATCC
           49188]
          Length = 387

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 167/371 (45%), Positives = 235/371 (63%), Gaps = 4/371 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
             R+ I+ L +  FRNYA L L     H +  G+NG GKTN++EAISFLSPGRG RRA+Y
Sbjct: 11  PERVSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAY 70

Query: 62  ADVTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            DV R  S   F+  A ++ M  G A+I            R ++IN +     D++  + 
Sbjct: 71  DDVARANSLDGFAIHAALDCMIYGEAEIG-TGTAGGGEGGRKVRINGIAG-SGDDMLDYA 128

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           RI W+VPSMD +F+G + +RRRFLDRMV AID  H +R++D+E+ MR RNRLL +G  D 
Sbjct: 129 RILWVVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDD 188

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
            W  +IE+QMAELG  I  AR E +  ++++I     +  FP     L G L+ + + ++
Sbjct: 189 QWLDAIESQMAELGTAIAAARAEAMRLIAAMIERLPVEGPFPKADCFLEGTLEQRINVEA 248

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L+E++ + L DGR  D  + RTL GPHR+DLIV +  K++  A  STGEQK +L+G+
Sbjct: 249 ALDLEEDFRRTLRDGRARDRAAGRTLEGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGL 308

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHARL +  +G APILLLDEI+AHLD  +R ALF I+ ++G Q FMTGTD+++F++L 
Sbjct: 309 VLAHARLTAELSGMAPILLLDEIAAHLDTGRRAALFGILDELGGQAFMTGTDRALFEALE 368

Query: 360 ETAKFMRISNH 370
             A+F  +S  
Sbjct: 369 GEAQFFNVSAG 379


>gi|302384448|ref|YP_003820270.1| DNA replication and repair protein RecF [Clostridium
           saccharolyticum WM1]
 gi|302195076|gb|ADL02647.1| DNA replication and repair protein RecF [Clostridium
           saccharolyticum WM1]
          Length = 361

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 157/374 (41%), Gaps = 19/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  +RNY  L + F     I  GDN  GKTN+LEAI   +  +  R +   ++
Sbjct: 1   MIIESIELKNYRNYDELHMDFSQGTNILYGDNAQGKTNVLEAIYVCATTKSHRGSKDKEI 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +     S      R   +    D+ +K         + + +N V I+   EL   + + 
Sbjct: 61  IQFDRDESHIKLNIRKNNIPYRIDMHLK-----KNKAKGVAVNGVPIKKASELFGIVNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    +      ERRRF+D  +  ++  +   ++ + R++  RN+LL +  F   + 
Sbjct: 116 FFSPEDLNLIKNGPAERRRFVDLELCQLNRYYVHSLVQYNRIVTQRNKLLKDMAFRPDYE 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ + G ++   R E I  L  +I     + +     L +    +       
Sbjct: 176 ETLDVWDMQLVQYGKEMIGYRKEFIEQLDGIIGSIHGQLSGEKEHLRILYEPNVG----- 230

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               EE+ + +   R+ D   + TL GPHR DL        I   +GS G+Q+   + + 
Sbjct: 231 ---AEEFEEAIRRSRQQDMKQKTTLTGPHRDDLSFVINGIDIR-RYGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L+  T    PILLLD++ + LD  ++N L   +  I + I  TG ++ V +    
Sbjct: 287 LAEIELVEKTVFDYPILLLDDVLSELDNSRQNQLLAGINHIQTVITCTGLEEFVRNRFPV 346

Query: 361 TAKFMRISNHQALC 374
             K  R+ +     
Sbjct: 347 D-KIFRVVSGTVGS 359


>gi|167759581|ref|ZP_02431708.1| hypothetical protein CLOSCI_01938 [Clostridium scindens ATCC 35704]
 gi|167662808|gb|EDS06938.1| hypothetical protein CLOSCI_01938 [Clostridium scindens ATCC 35704]
          Length = 363

 Score =  326 bits (837), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 97/374 (25%), Positives = 162/374 (43%), Gaps = 21/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ L +  FRNY  L+L FD    IF GDN  GKTNILEA+      +  R A   D+
Sbjct: 1   MKIESLKLKNFRNYDLLKLEFDEATNIFYGDNAQGKTNILEAVYLSGTTKSHRGAKDRDL 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +     S         G+    D+ +K       S + + IN + IR   EL   + + 
Sbjct: 61  IKFDQNESHIEAIVERNGINYQIDMHLK-----KNSPKGIAINKMPIRKASELFGIVNLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRF+D  +  +D  +   + ++ R++  RN LL +  F     
Sbjct: 116 FFSPEDLNIIKNGPSERRRFVDLELSQLDKVYLNDLSNYNRIVNQRNHLLKDMGFGKQQD 175

Query: 183 ----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                   + Q+ + G +I   R +++  ++ +I     K       L +       ++ 
Sbjct: 176 LMDTLDIWDLQLIQYGTRIIDRRKKIVEEINKIISSIHGKLTGGKENLQVI------YEP 229

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S  +L     + L    + D   + T +GPHR D+     D  I   +GS G+Q+   + 
Sbjct: 230 SNGSLT--LEQALARNLERDLRMKSTSVGPHRDDICFMAGDLDIR-RYGSQGQQRTAALS 286

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + L+   L+       P+LLLD++ + LD+ ++N L   + DI + I  TG D+ V    
Sbjct: 287 LKLSEIELVKQAIHDTPVLLLDDVLSELDKHRQNYLLDSIHDIQTLITCTGVDEFVNHRF 346

Query: 359 NETAKFMRISNHQA 372
           +   K   + N Q 
Sbjct: 347 SIN-KVFHVQNGQV 359


>gi|326789143|ref|YP_004306964.1| DNA replication and repair protein RecF [Clostridium lentocellum
           DSM 5427]
 gi|326539907|gb|ADZ81766.1| DNA replication and repair protein RecF [Clostridium lentocellum
           DSM 5427]
          Length = 360

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 164/370 (44%), Gaps = 17/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L ++ FRNY  L +  D    IF GDN  GKTNILE+I   +  R  R     ++
Sbjct: 1   MYIKELALTNFRNYEELNISLDKGINIFKGDNAQGKTNILESIYLCATARSHRTHKEKEI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    S     A V+       +   ++       +   IN + I  + EL   L I  
Sbjct: 61  IRWNEES-----AHVKLAVQKNYVQDIIDFHLTSKAKSAIINRMPIGRLGELFGCLNIVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSW 182
             P   ++      ERRRF+D  +  ID  +   +  + ++++ RN  L +     D+S 
Sbjct: 116 FSPEDLQLIKNSPKERRRFIDIELCQIDKLYYYSLRQYHKVLKQRNLALKQYFSNKDASM 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+ E    +   R E I  ++ +  +     +    KL +    + +       
Sbjct: 176 LDVWDMQLEEYASAVIKKRHEFIQEINEIASKIHDDISGHKEKLQVIYEPNVEVR----- 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
              ++ KK+   R+ D + + T IGPHR DL     D  +   +GS G+Q+ V++ + LA
Sbjct: 231 ---DFGKKILKYREKDILYQTTSIGPHRDDLTFLINDMDVK-TYGSQGQQRSVVLSMKLA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              ++    G  PILLLD++ + LD +++  LF+   +I + I  TG ++SV+++  +  
Sbjct: 287 ELNIMKKYIGEEPILLLDDVLSELDHNRQGDLFKYTQNIQTLITCTGIEQSVWNT-QKIG 345

Query: 363 KFMRISNHQA 372
           K   +     
Sbjct: 346 KLYNVKAGSI 355


>gi|260584260|ref|ZP_05852007.1| DNA replication and repair protein RecF [Granulicatella elegans
           ATCC 700633]
 gi|260157778|gb|EEW92847.1| DNA replication and repair protein RecF [Granulicatella elegans
           ATCC 700633]
          Length = 369

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 167/375 (44%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L ++ FRNY  L L F     IF+G+N  GKTN++E+I  L+  +  R     ++
Sbjct: 1   MRLVELQLNHFRNYEELFLEFGKGVHIFIGENAQGKTNLMESIYTLAMTKSHRTNQDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +     A ++G       +I LE R     +  ++N +  + +      L +  
Sbjct: 61  IMWNEDT-----ATIKGKVEKKISNIPLEIRFSNKGKIGRVNHLEQKKLSSYLGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P    +  G    RR+F+D  +  ++P +   +++++RL++ RN  L +     S   
Sbjct: 116 FAPENLELVKGAPANRRKFMDMELGQMNPIYLHELVEYQRLIKQRNHYLKQLAIKKSSAD 175

Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q+ E    I   R+E +  L +L     ++ +    + SL        ++  
Sbjct: 176 LYLEVLTEQVIEKATAILNHRLEFMEQLEALARPIHEQISLGREEFSLKYQTSLSIEKGM 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   +KE Y K+    +K +     TL+GPHR DLI    DK +    GS G+Q+  ++ 
Sbjct: 236 SQDEVKELYQKQFEAVQKRELEQASTLVGPHRDDLIFYLNDKPV-QNFGSQGQQRSTVLS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   L++  TG  PILLLD++ + LD+D++  L + + +   Q F+T T        
Sbjct: 295 LKLAEIELMNIATGEYPILLLDDVLSELDDDRQTHLIKAIENK-VQTFITTTSLDGIRKQ 353

Query: 358 LNETAKFMRISNHQA 372
                    I   Q 
Sbjct: 354 FINEPIVYPIHQGQV 368


>gi|194467406|ref|ZP_03073393.1| DNA replication and repair protein RecF [Lactobacillus reuteri
           100-23]
 gi|194454442|gb|EDX43339.1| DNA replication and repair protein RecF [Lactobacillus reuteri
           100-23]
          Length = 374

 Score =  326 bits (836), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 151/373 (40%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRNY  L + F+    + +G N  GKTN+LEAI  LS  +  R ++  ++
Sbjct: 1   MILTELHLHHFRNYQDLTVHFNPGVNVLIGHNAQGKTNMLEAIYVLSLTKSHRTSNDHEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S     A + G    +   I LE +     +  ++N +    + +    L    
Sbjct: 61  INWQEKS-----ALISGTVEKSIGKIPLELQFSSKGKKAKVNHLEQARLSQYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR F+DR    +  ++      +  L+R +N+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPALRRHFMDREFSQMSSKYLYNAGQYRTLLRQKNKYLKQLKYKQQTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PHIKLSLTGFLDGKFDQ 238
                +  Q+A  G ++ IAR   +  L     +  Q+ +     ++L     L    D 
Sbjct: 176 VLLGVLSDQLAAFGAEVIIARQHFLKHLEGWAADLHQEISLNKESLRLEYVNQLKVSDDT 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +     +   K   D  + +     T+ GPHR D+     DK +  A GS G+Q+   + 
Sbjct: 236 TVEEAYQALFKLYQDNEQREIEQGTTIYGPHRDDIRFLVNDKNV-QAFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+   TG  P+LLLD++ + LD  ++  L   + +   Q F+T T  S     
Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAIQNK-VQTFLTTTSLSDVARQ 353

Query: 358 LNETAKFMRISNH 370
           L        I + 
Sbjct: 354 LINEPTIFEIEHG 366


>gi|89074700|ref|ZP_01161158.1| recombination protein F [Photobacterium sp. SKA34]
 gi|89049464|gb|EAR55025.1| recombination protein F [Photobacterium sp. SKA34]
          Length = 360

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 163/369 (44%), Gaps = 13/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN AS  L   A     VG NG GKT++LEAI +L  GR FR    + V
Sbjct: 1   MALTRLMVHDFRNIASCDLALAAGFNFLVGPNGSGKTSVLEAIHYLGHGRSFRSHLTSRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      F    RV   +    + I +  + D +   ++I     + + +L + L +  
Sbjct: 61  IRHEQAELF-IHGRVVDNQTQLMLPIGINKKRDGTT-DVKIAGESNQKLAQLAQILPLQL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +  G    RR F+D  VF ++P+        +RL + RN LL          S
Sbjct: 119 ITPEGFDLLIGGPKYRRAFIDWGVFHVEPKFYHAWARLKRLTKQRNALLKTARSYRE-LS 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I++ R + I+A+     E  Q    P   + L  +   + +       
Sbjct: 178 YWDQELALLAEEISVWRKDYISAVKEKAAEIFQ-VFLPEFDIQLGFYRGWEKETP----- 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T+ GPH++DL +      +     S G+ K+++  + LA  
Sbjct: 232 --YAELLQRNFERDCQLGYTVSGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-DKSVFDSLNETAK 363
             ++  TG   I L+D+ ++ LD  +R  L + + +  +Q+F++   D  V D L+E  K
Sbjct: 289 LHLTEATGKQCIYLIDDFASELDSQRRALLAQRLKETNAQVFISAISDDQVADMLDENGK 348

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 349 LFHVEHGKI 357


>gi|241895510|ref|ZP_04782806.1| recombination protein F [Weissella paramesenteroides ATCC 33313]
 gi|241871256|gb|EER75007.1| recombination protein F [Weissella paramesenteroides ATCC 33313]
          Length = 383

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 161/376 (42%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L ++ FRNY SL + F +   +F+G N  GKTN+LEAI  L+  R  R ++  ++
Sbjct: 1   MELMSLKLNNFRNYESLDVSFSSGVNVFLGPNAQGKTNLLEAIYVLALTRSHRTSTDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +       A+V G        + L  +     +  +IN +    +      L +  
Sbjct: 61  ISWQAKE-----AQVAGTVARQYSDVPLSLKFTNKGKKARINHLNQAKLANYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR F+DR    +  ++      ++ +++ RNR L +       D 
Sbjct: 116 FAPEDLDLVKGAPSVRRNFIDREFSQMSAKYLYTANQYKEVLKQRNRYLKQLQSKQASDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINAL--SSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
            +   +  Q+     ++   RV +I  L  ++  ++    +N   + +     L+ +   
Sbjct: 176 LYLDVLTEQLVNFASELITRRVTLIKKLDAAAQPIQAAITQNNEQLHIQYVSQLNNESLA 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +  ++K+    +    R+ + +   TL+GPHR DL  D  +  +    GS G+Q+   + 
Sbjct: 236 NIESVKQAMLSRFKQLREREIIMGTTLLGPHRDDLRFDVNEHDV-ANFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+   TG  P+LLLD++ + LD D++  L   + D   Q F+T    S     
Sbjct: 295 VKLAEIDLMKEETGEYPVLLLDDVLSELDSDRQTHLLAAMQDK-VQTFITTPSLSDVARQ 353

Query: 358 LNETAKFMRISNHQAL 373
           L    K   + +   +
Sbjct: 354 LIHEPKIFHVDSGHLV 369


>gi|259502127|ref|ZP_05745029.1| recombination protein F [Lactobacillus antri DSM 16041]
 gi|259169940|gb|EEW54435.1| recombination protein F [Lactobacillus antri DSM 16041]
          Length = 373

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 147/376 (39%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRNY    + F     + +G N  GKTN+LEAI  LS  R  R  +  ++
Sbjct: 1   MILSELHLHHFRNYEDQTVHFAPGVNVLIGHNAQGKTNMLEAIYALSLTRSHRTTNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S     A + G+       + LE +  +  +  ++N +    + +    L    
Sbjct: 61  INWREKS-----ASISGVVQKTSGKVPLELQFTKEGKRAKVNHLEQARLAQYIGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     +  ++      +  L+R RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGAPAVRRRFMDMEFSQMSSKYLYNASQYRSLLRQRNKYLKQLKYGQQHDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
                +  Q+A  G ++ +AR   +  L     +   + +    KL L     L    + 
Sbjct: 176 VLLDVLSDQLAAYGAELVVARFHFLQQLEKWAADLHYQISLNAEKLRLVYATQLKVTAET 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +     ++      + +  +     T+ GP R D+      K +  + GS G+Q+   + 
Sbjct: 236 TVDDAYQQLLTIFKENKGREIDQGSTMFGPQRDDIRFLVNGKNV-QSFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+   TG  P+LLLD++ + LD  ++  L   + D   Q F+T T  S     
Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDTVRQTHLLTAIQDK-VQTFLTTTSLSDVARQ 353

Query: 358 LNETAKFMRISNHQAL 373
           L        I N   +
Sbjct: 354 LINEPTIFNIKNGTLI 369


>gi|148543247|ref|YP_001270617.1| recombination protein F [Lactobacillus reuteri DSM 20016]
 gi|184152659|ref|YP_001841000.1| recombination protein F [Lactobacillus reuteri JCM 1112]
 gi|227364310|ref|ZP_03848403.1| recombination protein F [Lactobacillus reuteri MM2-3]
 gi|325683509|ref|ZP_08163025.1| recombination protein F [Lactobacillus reuteri MM4-1A]
 gi|166918724|sp|A5VHF6|RECF_LACRD RecName: Full=DNA replication and repair protein recF
 gi|226737809|sp|B2G4Y8|RECF_LACRJ RecName: Full=DNA replication and repair protein recF
 gi|148530281|gb|ABQ82280.1| DNA replication and repair protein RecF [Lactobacillus reuteri DSM
           20016]
 gi|183224003|dbj|BAG24520.1| DNA replication and repair protein RecF [Lactobacillus reuteri JCM
           1112]
 gi|227070623|gb|EEI08953.1| recombination protein F [Lactobacillus reuteri MM2-3]
 gi|324977859|gb|EGC14810.1| recombination protein F [Lactobacillus reuteri MM4-1A]
          Length = 374

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 150/373 (40%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRNY  L + F+    + +G N  GKTN+LEAI  LS  +  R ++  ++
Sbjct: 1   MILTELHLHHFRNYQDLTVHFNPGVNVLIGHNAQGKTNMLEAIYVLSLTKSHRTSNDHEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S     A + G    +   I LE +     +  ++N +    + +    L    
Sbjct: 61  INWQEKS-----ALISGTVEKSIGKIPLELQFSSKGKKAKVNHLEQARLSQYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RR F+DR    +  ++      +  L+R +N+ L         D 
Sbjct: 116 FAPEDLSLVKGSPALRRHFMDREFSQMSSKYLYNAGQYRTLLRQKNKYLKQLKYRQQTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PHIKLSLTGFLDGKFDQ 238
                +  Q+A  G ++ IAR   +  L     +  Q+ +     ++L     L    D 
Sbjct: 176 VLLGVLSDQLAAFGAEVIIARQHFLKHLEGWAADLHQEISLNKESLRLEYVNQLKVSDDT 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +     +   K   D  + +     T+ GPHR D+     DK +  A GS G+Q+   + 
Sbjct: 236 TVEEAYQALFKLYQDNEQREIEQGTTIYGPHRDDIRFLVNDKNV-QAFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+   TG  P+LLLD++ + LD  ++  L   + +   Q F+T T  S     
Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAIQNK-VQTFLTTTSLSDVARQ 353

Query: 358 LNETAKFMRISNH 370
           L        I + 
Sbjct: 354 LINEPTIFEIEHG 366


>gi|163867417|ref|YP_001608614.1| recombination protein F [Bartonella tribocorum CIP 105476]
 gi|161017061|emb|CAK00619.1| DNA replication and repair protein [Bartonella tribocorum CIP
           105476]
          Length = 377

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 166/375 (44%), Positives = 229/375 (61%), Gaps = 6/375 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +++ ++ L +  +RNY+   + F  QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y
Sbjct: 5   VHKVSVRQLKLLRYRNYSFFNIHFSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAY 64

Query: 62  ADVTRI-GSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +D++ I G    F  FA +E  + G   I   LE  D+   R + I+ V     D L  +
Sbjct: 65  SDISFIDGGGEGFVVFACLECALYGEVKIGTALEVSDN--SRKVHIDGVN-EPSDCLTDY 121

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             IS L PSMD +F+G S+ERRRFLDRMV AIDP H RR+ D+++ MR RNRL  +G  D
Sbjct: 122 CHISILTPSMDGLFTGPSLERRRFLDRMVLAIDPLHSRRIADYDKTMRARNRLFLDGNED 181

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQ 238
           ++W +++E QMAEL   I+ AR+++I  L+ +  +   +  FP   L + GFL+    D 
Sbjct: 182 NAWFNALEKQMAELATAISAARIDVIRLLNDMFTQMPSQIPFPRAFLQIDGFLETALGDI 241

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   ++E++   L   R MD  + RTL GPHR+DL V Y DK       STGEQK +L G
Sbjct: 242 SATEVEEQFCDLLRRNRAMDRAAGRTLEGPHRTDLQVFYADKNRAATSCSTGEQKALLTG 301

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + L HARL    +  APILLLDE++AHLD  +R ALF I+ D+  Q FMTGTD+ +FD L
Sbjct: 302 LVLCHARLTGMISQRAPILLLDEMAAHLDSHRRAALFDILDDLSVQTFMTGTDRLLFDDL 361

Query: 359 NETAKFMRISNHQAL 373
              A+F  I +   L
Sbjct: 362 KGRAEFFEIKDGALL 376


>gi|315037234|ref|YP_004030802.1| recombination protein F [Lactobacillus amylovorus GRL 1112]
 gi|325955725|ref|YP_004286335.1| recombination protein F [Lactobacillus acidophilus 30SC]
 gi|312275367|gb|ADQ58007.1| recombination protein F [Lactobacillus amylovorus GRL 1112]
 gi|325332290|gb|ADZ06198.1| recombination protein F [Lactobacillus acidophilus 30SC]
 gi|327182553|gb|AEA31000.1| recombination protein F [Lactobacillus amylovorus GRL 1118]
          Length = 375

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 155/376 (41%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    +  FRN   L + FD    IF+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MYLDHFTVQNFRNLKKLDVDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F   +A + G    + + + L     +  + + IN V    + +    L    
Sbjct: 61  I-----GFDGEYANLLGHVQKSQVDLTLRVLITKKGKKVWINRVEQSKLSKYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D+    I+P +      + +++  +N  L +       D 
Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINPEYLYFASKYRQVLMQKNNYLKQLSKGKAKDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL---DGKFD 237
            +   +  Q+A +  ++   R + +  LS    +     +    KL++       D + D
Sbjct: 176 VFLDVLSDQLAGIAAEVISRRFKFLRYLSHYASDAYAHISLGGEKLAIAYHPSVSDIEAD 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +   + ++        +  +     T  GPHR D+      K   + + S G+Q+ + +
Sbjct: 236 DNTETIYQKILASFERNKATEIRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD      
Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +   I + + 
Sbjct: 354 EIIKKPRVYHIQSGKI 369


>gi|307942710|ref|ZP_07658055.1| DNA replication and repair protein RecF [Roseibium sp. TrichSKD4]
 gi|307773506|gb|EFO32722.1| DNA replication and repair protein RecF [Roseibium sp. TrichSKD4]
          Length = 379

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 152/370 (41%), Positives = 234/370 (63%), Gaps = 6/370 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L+++ FRNYASL L   AQ   FVG NG GKTNILEA+S+L+ GRG RRA+ AD+T
Sbjct: 8   RLNRLSLTNFRNYASLDLDLAAQLVAFVGANGTGKTNILEAVSYLTAGRGLRRANLADIT 67

Query: 66  -RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      +S  ++V+  +   D+SI    + + + R ++I+ V  R  D L  ++RI W
Sbjct: 68  CKQVQEGGWSVASKVD--QDGLDVSIGTGLKQNEAGRRVRIDGVDQRTSDSLLDYVRILW 125

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+P+MD +F+G   +RRRFLDR+  +++P H R++  FE+ +R RNRLL +G   +S+ +
Sbjct: 126 LIPAMDGLFTGPGSDRRRFLDRLTLSLNPAHGRQVSSFEKALRQRNRLLEQG-GSASYLT 184

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFD-QSFCA 242
           ++E Q+AELG  + ++R E ++ L   + E  +    FP   L LTG  + + +  S   
Sbjct: 185 AVEQQVAELGTSVALSRRETVSLLQGTLSEQAELGLPFPIAGLELTGDFEAETEGLSASD 244

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            ++ + K L DGR  D  + RTL GPH SDL V +  K +  +  STGEQK +L+G+ LA
Sbjct: 245 QEDHFRKLLEDGRPRDRAAGRTLTGPHLSDLHVRHTAKDMPASQSSTGEQKALLIGLILA 304

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA L ++ +G  PILLLDE++AHLD ++R ALF  +  +G Q+FMTGTD+S+F+SL   +
Sbjct: 305 HADLSASVSGLTPILLLDEVAAHLDPNRREALFARLDALGCQVFMTGTDESLFESLPIPS 364

Query: 363 KFMRISNHQA 372
           +   I + +A
Sbjct: 365 QIFAIEDGKA 374


>gi|209883687|ref|YP_002287544.1| DNA replication and repair protein RecF [Oligotropha
           carboxidovorans OM5]
 gi|209871883|gb|ACI91679.1| DNA replication and repair protein RecF [Oligotropha
           carboxidovorans OM5]
          Length = 382

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 137/374 (36%), Positives = 205/374 (54%), Gaps = 7/374 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L+++EFR+Y +  +   +   + VG NG GKTN LEAIS L+PGRG RRA + D+ 
Sbjct: 5   RILRLSLTEFRSYHAASVRPQSDLVVLVGPNGAGKTNCLEAISLLAPGRGLRRARFEDIA 64

Query: 66  RI---GSPSFFSTFARVEGMEGLADISIKL---ETRDDRSVRCLQINDVVIRVVDELNKH 119
                     ++  A VEG  GLA +   +         + R  +I+   +       +H
Sbjct: 65  NRAGDDGDGSWAVSAEVEGALGLATLGTGIDAPSAEGGNAKRRARIDREAVSSASAFGEH 124

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           LR+ WL P+MD +F+G + ERRRF DR+V AID  H  R+   ER +R RNRLL +  FD
Sbjct: 125 LRMVWLTPAMDGLFTGPASERRRFFDRLVLAIDKDHSSRVSALERSLRSRNRLLEDRNFD 184

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQ 238
             WC +IE + AEL V +   R   +  L+ ++        FP  +++L G+++     +
Sbjct: 185 PHWCEAIERETAELAVAVAAQRGHTLRRLAGMLAARGATSVFPSARITLDGWMENALMSE 244

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
              A+++ Y   L   R +D+ + RTL GPH +DL V Y  K +     STGEQK +L+G
Sbjct: 245 PATAVEDRYRDILRKSRLLDAAAGRTLNGPHLTDLHVIYAPKNMPAKEASTGEQKALLIG 304

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LAHA L++  TG  P+LLLDE+ AHLD  +R ALF  +  +G Q++MTG D + F   
Sbjct: 305 LILAHASLVAEMTGIVPLLLLDEVVAHLDPRRRAALFDELATLGGQVWMTGADPAAFAEA 364

Query: 359 NETAKFMRISNHQA 372
              A+   + +   
Sbjct: 365 GSRAERFDVEDGAI 378


>gi|154250461|ref|YP_001411285.1| DNA replication and repair protein RecF [Parvibaculum
           lavamentivorans DS-1]
 gi|154154411|gb|ABS61628.1| DNA replication and repair protein RecF [Parvibaculum
           lavamentivorans DS-1]
          Length = 412

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 146/376 (38%), Positives = 220/376 (58%), Gaps = 6/376 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           + R ++  L +++FR+YA   L  D +  +  G+NG GKTN+LEA+S LSPGRG R A+Y
Sbjct: 30  SPRARLSRLVVTDFRSYARAELALDGRPVVLTGENGAGKTNLLEAVSLLSPGRGLRGAAY 89

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKH 119
           A++ R      ++  A +E   G   +   +E         R ++I+         L  H
Sbjct: 90  AEIARDNGEGGWAVAATLEAEHGPVRLGTGIEPGMAPSSRSRSVRIDGEPA-GPSALAAH 148

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           LRI WL P+MDR+F   + ERRRFLDR+V   DP H  R   +ER +R R++LL +  FD
Sbjct: 149 LRIVWLTPAMDRLFVEGASERRRFLDRLVMGFDPAHGTRAAAYERALRERSKLLADDVFD 208

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +W S +E+QMAE GV +  AR+E++  L    ++   +  FP   ++L G L+    ++
Sbjct: 209 DAWLSGLESQMAEHGVALAAARLEIVARLRG-ALDVAPEGPFPRAHVALEGSLETALAEA 267

Query: 240 FCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                E+ +  +L + R  D+ + R L GPHRSDL+V +  K       STGEQK +L+G
Sbjct: 268 AAVDVEDGFRARLAEMRGRDAAAGRALDGPHRSDLLVRHTAKDREARQCSTGEQKALLIG 327

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           I LA+ARL++   G AP+LLLDE++AHLD  +R ALF  +  +G Q FMTGTD S+F++L
Sbjct: 328 IVLANARLLAAM-GRAPLLLLDEVAAHLDAGRRAALFDEIVSLGLQAFMTGTDPSLFETL 386

Query: 359 NETAKFMRISNHQALC 374
            E A+ +R+++     
Sbjct: 387 GERAQDLRVAHGTIQS 402


>gi|220930854|ref|YP_002507762.1| DNA replication and repair protein RecF [Halothermothrix orenii H
           168]
 gi|254790480|sp|B8CZN7|RECF_HALOH RecName: Full=DNA replication and repair protein recF
 gi|219992164|gb|ACL68767.1| DNA replication and repair protein RecF [Halothermothrix orenii H
           168]
          Length = 375

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 166/374 (44%), Gaps = 15/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + + +FRN     +  D +  +FVG NG GKTN LEA+  +      R  +  ++
Sbjct: 1   MYIDRIYLKDFRNLTENLIKLDNRLNVFVGLNGQGKTNFLEAVYLMGTASSHRTNADREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R            V+  E      +K+    ++ V+ L+INDV    V EL  +L +  
Sbjct: 61  IRWNQDRAVVQLYLVKRDEK-----LKISLEINKKVKKLEINDVPQERVSELLGNLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P   ++       RR+FLD  +  + P +   +  +  ++  RN LL E       D+
Sbjct: 116 FSPEDLKLVKEGPHFRRKFLDTELSQVKPYYHYLLKKYNHILSQRNNLLKELMTGNKSDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALS--SLIMEYVQKENFPHIKLSLTGFLDGK-FD 237
           +     + Q+ E+G KI   R+E+I+ L   + +      +   +I LS    L  +  +
Sbjct: 176 TLLEVWDEQLVEIGAKIIQNRIEVIDKLKILARLSHRQITDGLENITLSYESSLSDRIEE 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    +K  +  KL + R  +     TL GP R DL +      I   +GS G+Q+   +
Sbjct: 236 KELEEIKIIFRNKLVNNRNEEITRGYTLAGPQRDDLKITMNGIDIR-KYGSQGQQRTAAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA    + +  G  P+LLLD++ + LD  +R+ L  I+     Q F+T TD    + 
Sbjct: 295 SLKLAELEFMKSEQGEYPVLLLDDVFSELDNKRRHRLIDIMAH-RVQTFITATDFFNLNE 353

Query: 358 LNETA-KFMRISNH 370
           +N  + K  ++ N 
Sbjct: 354 INTPSIKVFKVRNG 367


>gi|210614351|ref|ZP_03290170.1| hypothetical protein CLONEX_02384 [Clostridium nexile DSM 1787]
 gi|210150695|gb|EEA81704.1| hypothetical protein CLONEX_02384 [Clostridium nexile DSM 1787]
          Length = 365

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 100/372 (26%), Positives = 166/372 (44%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRNY  L + FDA   IF GDN  GKTNILE+I      +  R     D+
Sbjct: 1   MIVKSLKLKNFRNYNLLNIEFDAATNIFCGDNAQGKTNILESIYLSGTTKSHRGTKDRDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            + G        A +E +     I  +++    + S + + IN + IR   EL   + I 
Sbjct: 61  IQFGHDE-----AHIETVVEKNGIPFQIDMHLKKNSPKGIAINKIPIRKASELFGIINIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRF+D  +  +D  +   + ++ R++  RN+LL + Y  +   
Sbjct: 116 FFSPEDLNIIKNGPAERRRFIDLELAQLDKLYLSDLSNYNRIINQRNKLLKDVYNRNDLL 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ + G KI   R + I  ++ +I E  +K      +L L       ++   
Sbjct: 176 ETLEIWDLQLIQYGNKIIERRKQFIGQVNEIISEVHRKLTGGREELKL------YYEPGI 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L  E+ K L   R+ D   + T +GPHR D+     D  I    GS G+Q+   + + 
Sbjct: 230 GNL--EFEKALLKNRERDIRMKSTSVGPHRDDICFMTNDLDIR-KFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+       PILLLD++ + LD+ ++N L   + D+ + I  TG D  V    + 
Sbjct: 287 LSEIELVKEIIKDTPILLLDDVLSELDKHRQNYLLDSIRDVQTLITCTGLDDFVNHRFSI 346

Query: 361 TAKFMRISNHQA 372
             K + +   + 
Sbjct: 347 N-KILYVKQGEV 357


>gi|259047901|ref|ZP_05738302.1| DNA replication and repair protein RecF [Granulicatella adiacens
           ATCC 49175]
 gi|259035578|gb|EEW36833.1| DNA replication and repair protein RecF [Granulicatella adiacens
           ATCC 49175]
          Length = 375

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 169/376 (44%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  FRNY S++L F     +F+G+N  GKTN++E+I  L+  +  R  +  ++
Sbjct: 1   MKLTNLQLQNFRNYESVQLEFTDGVHVFIGENAQGKTNLMESIYALAMTKSHRTTNDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  +   FA ++G          LE +  +  +  ++N +  + +     +L +  
Sbjct: 61  I-----GWKKDFATIKGTIEKTATKTNLELQFSKKGKIAKVNYLEQKRLSSYLGNLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  +   +   ++++ R+++ RN  L +         
Sbjct: 116 FAPENLTLVKGSPQNRRKFVDMELGQMSSLYLYDLVEYNRVLKQRNTYLKQLAIKKKQPD 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +   ++EL  KI   R++ +  L +L +    + +    K S++       +   
Sbjct: 176 EYLEVLSEMLSELASKIVFHRLDFMKQLEALAIPIHDQLSLGREKFSVSYQATIPLEDGL 235

Query: 241 CA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            A  +KE Y  +    +  ++    TLIGPHR DL + Y ++     +GS G+Q+  ++ 
Sbjct: 236 TASQMKEIYMNQFKKNQTREADQATTLIGPHRDDL-IFYLNEVPVQTYGSQGQQRSTVLS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
           + LA   L+  +TG  P+LLLD++ + LD+D++  L + + +   Q F+T T        
Sbjct: 295 LKLAEIELMKLSTGEYPLLLLDDVLSELDDDRQTHLIKAIENK-VQTFITTTSLDGIKQQ 353

Query: 358 LNETAKFMRISNHQAL 373
                  + I     L
Sbjct: 354 FINEPVVIPIEKGTIL 369


>gi|251777974|ref|ZP_04820894.1| DNA replication and repair protein RecF [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082289|gb|EES48179.1| DNA replication and repair protein RecF [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 361

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 168/371 (45%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + ++ +RNY +L L       +F+GDN  GKTN+LE+I + +  +  R +   D+
Sbjct: 1   MYIKAIMLANYRNYNNLELNLSEGVNVFIGDNAQGKTNVLESIYYCAFAKSHRTSRDKDL 60

Query: 65  TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                + ++ S     + ++   DI I    RD +  + +++N + I  + EL     + 
Sbjct: 61  INWKENEAYISLLVGKKRLDKRIDIKI---LRDGK--KAIKVNSIKINKIGELFGTFNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   +I       RR+FLD  +  I  ++   ++ + +++  RN +L    F+    
Sbjct: 116 MFSPEDLKIIKESPGIRRKFLDMELCQISKKYYFNLVQYNKILNERNVILRSRDFNKDIL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+ E    I   R+E I+ ++        +       +        KF ++F  +
Sbjct: 176 EVYDLQLVECADYIVKERLEYIDKINYYGKFIHNEITSGKEDIVFKYDSGVKFKENFKYV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              + +KL +    D     T +GPHR D  V   +  +    GS G+Q+  ++ +  + 
Sbjct: 236 ---FLEKLRNNLLKDREQGITSVGPHRDDFNVLINNIDVK-KFGSQGQQRTAVLTMKFSS 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA 362
            ++I   T   PILLLD++ + LD +++  +   ++DI  Q  +T T  +   D L++ +
Sbjct: 292 LKIIKEITKEYPILLLDDVLSELDINRKRYVLSTLSDI--QTIITCTGINDLEDYLDDKS 349

Query: 363 KFMRISNHQAL 373
           K   + N + +
Sbjct: 350 KVFNVCNGEIV 360


>gi|90960994|ref|YP_534910.1| recombination protein F [Lactobacillus salivarius UCC118]
 gi|122449496|sp|Q1WVP2|RECF_LACS1 RecName: Full=DNA replication and repair protein recF
 gi|90820188|gb|ABD98827.1| DNA replication and repair protein [Lactobacillus salivarius
           UCC118]
 gi|300213942|gb|ADJ78358.1| DNA replication and repair protein recF [Lactobacillus salivarius
           CECT 5713]
          Length = 379

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 158/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRNY  + + F  Q  + +G N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MYLEKLELKHFRNYEDVNVAFSPQVNVLIGKNAQGKTNLLESIYVLAMARSHRTSNDREM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +F    A + G       + KLE    R  +  ++N +    + +    L +  
Sbjct: 61  V-----TFKKDAALIRGEVHQRLGNTKLELLISRKGKKAKVNHLEKARLSQYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     ID  +   + ++  ++R RN+ L E       D 
Sbjct: 116 FAPEDLALVKGAPSVRRRFIDMEFGQIDALYLHTLTEYRAVLRQRNKYLKELQTKKATDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q++E G +I   R+E +  L     +   +       L        K  Q  
Sbjct: 176 VYLEILSEQLSESGSQIIFKRLEFLQELEKYADKLHNQITQGKEHLQFQYESTLKEYQGK 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   LK+   ++       +     TL+GPHR D+     DK + + +GS G+Q+   + 
Sbjct: 236 SVLELKQSLIEQYKTMMDKEIFQGTTLLGPHRDDVRFMLNDKNVQV-YGSQGQQRTAALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357
           + LA   L+   T   PILLLD++ + LD  ++  L + + +   Q F+T      V   
Sbjct: 295 VKLAEIDLMKEKTHEYPILLLDDVLSELDGARQTHLLKTIQNK-VQTFLTTPGLSDVAQQ 353

Query: 358 LNETAKFMRISNHQA 372
           L    K  RI N + 
Sbjct: 354 LINKPKIFRIDNGKI 368


>gi|301300481|ref|ZP_07206680.1| DNA replication and repair protein RecF [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851928|gb|EFK79613.1| DNA replication and repair protein RecF [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 379

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 157/375 (41%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRNY  + + F  Q  + +G N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MYLEKLELKHFRNYEDVNVAFSPQVNVLIGKNAQGKTNLLESIYVLAMARSHRTSNDREM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +F    A + G       + KLE    R  +  ++N +    + +    L +  
Sbjct: 61  V-----TFKKDAALIRGEVHQRLGNTKLELLISRKGKKAKVNHLEKARLSQYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     ID  +   + ++  ++R RN+ L E       D 
Sbjct: 116 FAPEDLALVKGAPSVRRRFIDMEFGQIDALYLHTLTEYRAVLRQRNKYLKELQTKKATDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS- 239
            +   +  Q++E G +I   R+E +  L     +   +       L        K  Q  
Sbjct: 176 VYLEILSEQLSESGSQIIFKRLEFLQELEKYADKLHNQITQGKEHLQFQYESTLKEYQGK 235

Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               LK+   ++       +     TL+GPHR D+     DK + + +GS G+Q+   + 
Sbjct: 236 NVVELKQSLIEQYKTMMDKEIFQGTTLLGPHRDDVRFMLNDKNVQV-YGSQGQQRTAALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357
           + LA   L+   T   PILLLD++ + LD  ++  L + + +   Q F+T      V   
Sbjct: 295 VKLAEIDLMKEKTHEYPILLLDDVLSELDGARQTHLLKTIQNK-VQTFLTTPGLSDVAQQ 353

Query: 358 LNETAKFMRISNHQA 372
           L    K  RI N + 
Sbjct: 354 LINKPKIFRIDNGKI 368


>gi|90581122|ref|ZP_01236921.1| recombination protein F [Vibrio angustum S14]
 gi|90437643|gb|EAS62835.1| recombination protein F [Vibrio angustum S14]
          Length = 360

 Score =  325 bits (833), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 163/369 (44%), Gaps = 13/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN AS  L   A     VG NG GKT++LEAI +L  GR FR    + V
Sbjct: 1   MALTRLMVHDFRNIASCDLALAAGFNFLVGANGSGKTSVLEAIHYLGHGRSFRSHLTSRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      F    RV   +    + I +  + D +   ++I     + + +L + L +  
Sbjct: 61  IRHEQAELF-IHGRVVDNQTQLMLPIGINKKRDGTT-DVKIAGESNQKLAQLAQILPLQL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +  G    RR F+D  VF ++P+        +RL + RN LL          S
Sbjct: 119 ITPEGFDLLIGGPKYRRAFIDWGVFHVEPKFYHAWARLKRLTKQRNALLKTARSYRE-LS 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I++ R + I+A+     E  Q    P   + L  +   + +       
Sbjct: 178 YWDQELALLAEEISVWRKDYISAVKEKAAEIFQ-VFLPEFDIQLGFYRGWEKETP----- 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T+ GPH++DL +      +     S G+ K+++  + LA  
Sbjct: 232 --YAELLQRNFERDCQLGYTVSGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-DKSVFDSLNETAK 363
             ++  TG   I L+D+ ++ LD  +R  L + + +  +Q+F++   D  V D L+E  K
Sbjct: 289 LHLTEATGKQCIYLIDDFASELDSHRRALLAQRLKETNAQVFISAISDDQVADMLDENGK 348

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 349 LFHVEHGKI 357


>gi|51891142|ref|YP_073833.1| DNA repair and genetic recombination protein [Symbiobacterium
           thermophilum IAM 14863]
 gi|81692267|sp|Q67TK4|RECF_SYMTH RecName: Full=DNA replication and repair protein recF
 gi|51854831|dbj|BAD38989.1| DNA repair and genetic recombination protein [Symbiobacterium
           thermophilum IAM 14863]
          Length = 375

 Score =  324 bits (832), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 101/375 (26%), Positives = 164/375 (43%), Gaps = 13/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FRNY SL + F     +  GDN  GKTN+LEAI FL+ GR  R +   D+
Sbjct: 1   MYLSTLQLGAFRNYDSLTIHFSPGLNVLYGDNAQGKTNLLEAIHFLATGRSHRTSRDPDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123
            + G     +  A V         +I+LE R     R  L+IN +  R +  L   L + 
Sbjct: 61  VQEGREELLARAAVV-----RRTGTIELELRCGLQTRKQLKINGIAERKIARLVGSLAVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   ++  G    RRRFLD  +  I   +   ++ + RL+  RN LL +   D    
Sbjct: 116 LFSPDDLQLLKGPPSGRRRFLDLELSQISQTYLHHLMAYNRLVAQRNTLLKQPVIDEGLM 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           +  + Q+ E G ++ + R E +  LS +   Y +        L L     G  D     L
Sbjct: 176 AVYDEQLVETGAQLVVRRAEAVRRLSPIASRYHRMLAEDREDLELAYQSQGVGDDGAADL 235

Query: 244 K---EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
           +       ++L   R  +   + TL+GPHR D+      +   + + S G+Q+  ++ + 
Sbjct: 236 ETVRRRLERELARLRSEERRRQVTLVGPHRDDVGFWVAGRDARL-YASQGQQRTAVLALK 294

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF--DSL 358
           LA    +S   G  P+LLLD++++ LD  +R+ L   V + G Q F+T TD         
Sbjct: 295 LAELEFMSEEIGEPPLLLLDDVASELDPHRRHYLLSAVRE-GVQSFITCTDLEDLMVREW 353

Query: 359 NETAKFMRISNHQAL 373
               +  R+     +
Sbjct: 354 PADHRLFRVRAGTVV 368


>gi|302872926|ref|YP_003841559.1| DNA replication and repair protein RecF [Clostridium cellulovorans
           743B]
 gi|307687879|ref|ZP_07630325.1| recombination protein F [Clostridium cellulovorans 743B]
 gi|302575783|gb|ADL49795.1| DNA replication and repair protein RecF [Clostridium cellulovorans
           743B]
          Length = 364

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 168/369 (45%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +  FRNY  L +   +   +F GDN  GKTN+LEAI + S G+  R     ++
Sbjct: 1   MFIENLKLRNFRNYKELNIDLYSGVNVFTGDNAQGKTNVLEAIYYCSLGKSHRTNKDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRIS 123
               +        ++E       ++ K++        + + IN + ++ + EL     + 
Sbjct: 61  ILWDA-----LSGQLEVTVNKTRLNKKIKIDILKEGKKAISINSIKLKKISELIGICNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-SW 182
              P   +I       RR+FLD  +  ++ ++   ++ + +++  RN +L     ++   
Sbjct: 116 MFSPEDLKIVKDSPSYRRKFLDIELCKLNSKYYFNLVQYNKVLNERNVVLKSNNGNNLDI 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+A+ G  I   RV+ IN L+    E  +       K+S +   D K   +   
Sbjct: 176 IEVYDMQLAKFGSHIVKDRVDYINKLNRYGQEIHKDITVSKEKISFSYITDAK---NLNG 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++ E    L   R+ D + + T +GPHR D  ++  D   T ++GS G+Q+  ++ I  A
Sbjct: 233 IEVELINLLKKNRQRDFIKKSTTVGPHRDDFSIEINDID-TRSYGSQGQQRTSILTIKFA 291

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNET 361
             ++I    G  PILLLD++ + LD +++  +   + D   Q  +T T  +  ++ LN+ 
Sbjct: 292 SLKIIKELIGEYPILLLDDVLSELDTNRQKYILNSIKD--VQTVITCTGMNEINNYLNDD 349

Query: 362 AKFMRISNH 370
            K   ++  
Sbjct: 350 YKLFIVNEG 358


>gi|299133397|ref|ZP_07026592.1| DNA replication and repair protein RecF [Afipia sp. 1NLS2]
 gi|298593534|gb|EFI53734.1| DNA replication and repair protein RecF [Afipia sp. 1NLS2]
          Length = 383

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 138/371 (37%), Positives = 208/371 (56%), Gaps = 4/371 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L++++FR+Y +  +       + VG NG GKTN LEAIS L+PGRG RRA + D+ 
Sbjct: 9   RILRLSLTQFRSYRAASVTTRGDLVVLVGPNGAGKTNCLEAISLLAPGRGLRRARFEDIA 68

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRI 122
                  ++  A VEG  GLA +   ++     D  + R ++I+   +       +HLR+
Sbjct: 69  NRAGDGSWAVSAEVEGAGGLATLGTGIDAPTGEDGSAKRRIRIDREAVSSASAFGEHLRM 128

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL PSMD +F+G + ERRR  DR+V AID  H  R+   ER +R RNRLL +  FD+ W
Sbjct: 129 VWLTPSMDGLFTGPASERRRLFDRLVLAIDKDHSSRVSALERSLRSRNRLLEDRNFDAHW 188

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
           C +IE + AEL V +   R   +  LS+++        FP  +++L G+++     +   
Sbjct: 189 CEAIERETAELAVAVAAQRGHTLQRLSAMLAARGATSAFPSARITLDGWMENALMSEPAT 248

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+++ Y   L   R +D+ + RTL GPH +DL V Y  K +     STGEQK +L+G+ L
Sbjct: 249 AVEDHYRDILRKSRLLDAAAGRTLNGPHLTDLHVIYAPKEMPAKEASTGEQKALLIGLIL 308

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHA L++  TG  P+LLLDE+ AHLD  +R ALF  +  +G+Q++MTG D + F      
Sbjct: 309 AHASLVAEMTGIVPLLLLDEVVAHLDPRRRAALFDELATLGAQVWMTGADPAAFTEAGTR 368

Query: 362 AKFMRISNHQA 372
           A    + +   
Sbjct: 369 ADRFEVEDGAI 379


>gi|323341104|ref|ZP_08081352.1| recombination protein F [Lactobacillus ruminis ATCC 25644]
 gi|323091525|gb|EFZ34149.1| recombination protein F [Lactobacillus ruminis ATCC 25644]
          Length = 386

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 156/376 (41%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  FRNY   +L F     + +G+N  GKTN+LE+I  L+  +  R  +  ++
Sbjct: 1   MRLSNLKLKNFRNYHETKLEFSPNINVLIGENAQGKTNLLESIYVLAMTKSHRTTNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S F     +EG+      +++L     +  +  ++N +    + +    L +  
Sbjct: 61  IEFSEKSAF-----LEGIVEKKTGNLRLSLSLSKKGKTARVNSLETPRLSQYIGKLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     ID  +   +  +  ++R RN  L +       D 
Sbjct: 116 FSPEDLSLVKGSPAVRRRFIDMEFGQIDAVYLYELTRYRTILRDRNVYLKQLQTKQSTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q+A+ G KI + R+E +  L +               L+         D   
Sbjct: 176 VYLEVLTEQLAKSGAKIILKRLEFLEELENYAKILHADITQQKENLTFKYKCTASIDDLE 235

Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +  A++    +        +     TLIGPHR D+      K +   +GS G+Q+   +
Sbjct: 236 MNQDAIEIRLKETFETIVDKEIFQGTTLIGPHRDDVSFKVNGKNV-QTYGSQGQQRTTAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA   L+   TG  P+LLLD++ + LD +++  L + + D   Q F+T    +    
Sbjct: 295 AVKLAEIDLMRAKTGEYPVLLLDDVLSELDGERQTHLLKAIQDK-VQTFLTTPGLNDIAR 353

Query: 357 SLNETAKFMRISNHQA 372
            L +  +  RI+  + 
Sbjct: 354 QLIKQPRLFRINAGKI 369


>gi|187932670|ref|YP_001884269.1| recombination protein F [Clostridium botulinum B str. Eklund 17B]
 gi|226737779|sp|B2THB7|RECF_CLOBB RecName: Full=DNA replication and repair protein recF
 gi|187720823|gb|ACD22044.1| DNA replication and repair protein RecF [Clostridium botulinum B
           str. Eklund 17B]
          Length = 361

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 166/371 (44%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + ++ +RNY +L L       +F+GDN  GKTN+LE+I + +  +  R +   D+
Sbjct: 1   MYIKAIMLANYRNYNNLELNLSEGVNVFIGDNAQGKTNVLESIYYCAFAKSHRTSRDKDL 60

Query: 65  TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                + ++ S     + ++   DI I    RD +  + +++N + I  + EL     + 
Sbjct: 61  INWKENEAYISLLVGKKRLDKRIDIKI---LRDGK--KAIKVNSIKINKIGELFGTFNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   +I       RR+FLD  +  I  ++   ++ + +++  RN +L    F+    
Sbjct: 116 MFSPEDLKIIKESPGIRRKFLDMELCQISKKYYFNLVQYNKILNERNVILRSRDFNKDIL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+ E    I   R+E I+ ++        +       +        KF   F   
Sbjct: 176 EVYDLQLVECADYIVKERLEYIDKINYYGKFIHNEITSGKEDIVFKYDSGIKFKDDF--- 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           K  + +KL +    D     T IGPHR D  V   +  +    GS G+Q+  ++ +  + 
Sbjct: 233 KYAFLEKLKNNLLRDREQGITSIGPHRDDFNVLINNIDVK-KFGSQGQQRTAVLTMKFSS 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA 362
            ++I   T   PILLLD++ + LD +++  +   + DI  Q  +T T  +   D L++ +
Sbjct: 292 LKIIKEITKEYPILLLDDVLSELDINRKRYVLSTLNDI--QTIITCTGINDLEDYLDDKS 349

Query: 363 KFMRISNHQAL 373
           K  ++ N + +
Sbjct: 350 KVFKVCNGEIV 360


>gi|300853236|ref|YP_003778220.1| putative DNA replication and repair protein RecF [Clostridium
           ljungdahlii DSM 13528]
 gi|300433351|gb|ADK13118.1| predicted DNA replication and repair protein RecF [Clostridium
           ljungdahlii DSM 13528]
          Length = 366

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 157/369 (42%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK+L +  FRNY  L + FD    +F+GDN  GKTNILE+I + S G+  R     ++
Sbjct: 1   MYIKYLKLINFRNYKELEMEFDKNLNVFIGDNAQGKTNILESIYYCSIGKSPRTNKDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                   +           L D  I+++   +   + + IN + +  + EL     +  
Sbjct: 61  INWNGKYAYIKAGVYSSSHNLNDKKIEIKIFKEGK-KGININSIRVNKLSELMGIFNVVM 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183
             P   +I       RR+FLD  +     R+   ++ + +++  RN LL      +S   
Sbjct: 120 FSPEDLKIIKESPSFRRKFLDIELCKFSKRYYYNLVQYNKVLSERNLLLRKRNNSNSDIL 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+++ G  I   R + IN LS +     +       K+                +
Sbjct: 180 DIYDIQLSKYGAVIIDLRNKYINKLSKMGKIIHEDITSQTEKIEFKYVTSIT---DLDNI 236

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +    K L   R+ D     TL GPHR D +       +    GS G+Q+  ++ +  A 
Sbjct: 237 ENSLFKVLETNRQRDIEKGITLYGPHRDDFVTSINGINVR-NFGSQGQQRTSVLTMKFAS 295

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362
             +I   TG  P+LLLD++ + LD +++  +   + +I  Q F+TGT    +  ++ +  
Sbjct: 296 LEIIKEITGEYPVLLLDDVLSELDANRQKYILNSIDEI--QTFITGTGIGDIKKNVKKEN 353

Query: 363 KFMRISNHQ 371
           +   + + +
Sbjct: 354 QIFIVKSGK 362


>gi|90420504|ref|ZP_01228411.1| DNA replication and repair protein recF [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335232|gb|EAS48985.1| DNA replication and repair protein recF [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 407

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 163/373 (43%), Positives = 226/373 (60%), Gaps = 2/373 (0%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
              +++  L +++FRNY +L L F     +FVGDNG GKTN+LEAIS L+PGRG RRA Y
Sbjct: 18  PPAVRLDELRLADFRNYETLSLRFTRGFVVFVGDNGAGKTNLLEAISLLTPGRGLRRAPY 77

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHL 120
            DV R G    FS  A    +     I+ K+       + R ++I++   +  DEL   L
Sbjct: 78  QDVARKGGSGGFSVRANAASLGVETIIATKMMPDPAGAAARSVRIDETAAKSADELLDLL 137

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           RI WL P+MD +F+G + +RRRFLDRMV A+DP H RR  D+ER +R RNRLL +   D 
Sbjct: 138 RILWLTPAMDGLFTGPAGDRRRFLDRMVLAVDPTHGRRAADYERAVRSRNRLLADNRLDD 197

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQS 239
           SW S IEAQMAELG+ + +AR E++  L+ +I        FP   L LT   DG    + 
Sbjct: 198 SWLSGIEAQMAELGIAMALARSELVGMLAGMIARTGAGSPFPSAGLELTSGYDGLDLARP 257

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +++E   +L   R  D  + RTL G HR++L V +  KA+  A  STGEQK +L+G+
Sbjct: 258 SADVEDEARMRLRSARYGDRAAGRTLEGAHRAELSVTHLAKAMPAALSSTGEQKALLIGL 317

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAHARL++  +   P+LLLDEI+AHLD  +R ALF ++ ++G Q FMTGTD S+F +L 
Sbjct: 318 VLAHARLVAAMSSLPPLLLLDEIAAHLDPGRRAALFDLIAELGVQAFMTGTDASLFAALG 377

Query: 360 ETAKFMRISNHQA 372
           + A+ M +S    
Sbjct: 378 DRAQIMEVSGGTV 390


>gi|160878166|ref|YP_001557134.1| DNA replication and repair protein RecF [Clostridium
           phytofermentans ISDg]
 gi|189039622|sp|A9KPP4|RECF_CLOPH RecName: Full=DNA replication and repair protein recF
 gi|160426832|gb|ABX40395.1| DNA replication and repair protein RecF [Clostridium
           phytofermentans ISDg]
          Length = 360

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 165/372 (44%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +S FRNY +L L F     I  GDN  GKTNILEA+   +  +  + +   ++
Sbjct: 1   MIVKSLELSNFRNYENLSLEFSPSTNILYGDNAQGKTNILEAVFLCATTKSHKGSKDREI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            ++ S       A +       D+  +L+    +   + + I+ + I+   EL   + + 
Sbjct: 61  IKLQSEE-----AHIRMRINRDDVDHRLDMHLKKNKPKGVAIDGIPIKRSSELFGIINVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    I      ERRRF+D  +  +   +   +I++ +++  RN LL +  F+ S  
Sbjct: 116 FFSPEDLSIIKNGPSERRRFIDMELCQLSKLYLHNLINYNKVLNQRNNLLKQIGFNKSLL 175

Query: 184 S---SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+   G  +   R   + +++ LI+   +K +    +L +            
Sbjct: 176 DTLYVWDQQLIHFGSALIKERDAFMKSMNELIIALHKKLSDGKEELEIVY--------EA 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              + E+  KL    + D   + T +GPHR DL      + +   +GS G+Q+   + + 
Sbjct: 228 SVAESEFENKLKKSMERDIALKVTNVGPHRDDLSFLINGQDVR-KYGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L+   T   PILLLD++ + LD  ++N L   +  I + +  TG ++ V + + E
Sbjct: 287 LAEIELVKQVTKDKPILLLDDVLSELDRKRQNQLLDSIVGIQTIVTCTGLEEFVNNRI-E 345

Query: 361 TAKFMRISNHQA 372
           T +  ++     
Sbjct: 346 TDRIYKVIQGTV 357


>gi|160941458|ref|ZP_02088793.1| hypothetical protein CLOBOL_06349 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435604|gb|EDP13371.1| hypothetical protein CLOBOL_06349 [Clostridium bolteae ATCC
           BAA-613]
          Length = 361

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 155/373 (41%), Gaps = 19/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  +RNY  L + F+    I  GDN  GKTNILEA+      +  + A   D+
Sbjct: 1   MIIESIELKNYRNYKELHMEFNQGTNILYGDNAQGKTNILEAVYVCCTSKSHKSAKDRDI 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     S      R   +    D+ +K         + + IN V IR   EL     + 
Sbjct: 61  IRFNQDESHIKLQIRKNNVPYRIDMHLK-----KNKPKGIAINGVPIRKASELFGIANVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRF+D  +  ++  +   ++ + +++  RN+LL E +F   + 
Sbjct: 116 FFSPEDLNIIKNGPSERRRFIDMELCQLNKLYVHSLVQYNKVLLQRNKLLKELFFRPEYE 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+   G ++   R E I  L+ +I             +S++           
Sbjct: 176 ETLDVWDMQLVNYGREVIKFRREFIKQLNEIIHAIHLSLTGGREDISISY--------EP 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              +++    L   R  D   + TL GPHR D+        I    GS G+Q+   + + 
Sbjct: 228 FTREDQMEDILKKNRAQDMKQKTTLSGPHRDDISFIVNGIDIR-RFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+  +L+   +   PILLLD++ + LD  ++N L   +  I + I  TG D  V +   +
Sbjct: 287 LSELQLVKQLSHDDPILLLDDVLSELDSSRQNHLLSAIKHIQTMITCTGLDDFVNNRF-Q 345

Query: 361 TAKFMRISNHQAL 373
             K  ++ +   +
Sbjct: 346 IDKVFKVIDGTVI 358


>gi|227891672|ref|ZP_04009477.1| recombination protein F [Lactobacillus salivarius ATCC 11741]
 gi|227866475|gb|EEJ73896.1| recombination protein F [Lactobacillus salivarius ATCC 11741]
          Length = 379

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 158/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRNY  + + F  Q  + +G N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MYLEKLELKHFRNYEDVNVAFSPQVNVLIGKNAQGKTNLLESIYVLAMARSHRTSNDREM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +F    A + G       + KLE    R  +  ++N +    + +    L +  
Sbjct: 61  V-----TFKKDAALIRGEVHQRLGNTKLELLISRKGKKAKVNYLEKARLSQYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     ID  +   + ++  ++R RN+ L E       D 
Sbjct: 116 FAPEDLALVKGAPSVRRRFIDMEFGQIDALYLHALTEYRAVLRQRNKYLKELQTKKATDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
            +   +  Q++E G +I   R+E +  L     +   +       L        K  Q  
Sbjct: 176 VYLEILSEQLSESGSQIIFKRLEFLQELEKYADKLHNQITQGKEHLQFQYESTLKEYQGK 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   LK+   ++       +     TL+GPHR D+     DK + + +GS G+Q+   + 
Sbjct: 236 SVLELKQSLVEQYKTMMDKEIFQGTTLLGPHRDDVRFMLNDKNVQV-YGSQGQQRTAALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDS 357
           + LA   L+   T   PILLLD++ + LD  ++  L + + +   Q F+T      V   
Sbjct: 295 VKLAEIDLMKEKTHEYPILLLDDVLSELDGARQTHLLKTIQNK-VQTFLTTPGLSDVAQQ 353

Query: 358 LNETAKFMRISNHQA 372
           L    K  RI N + 
Sbjct: 354 LINKPKIFRIDNGKI 368


>gi|188590699|ref|YP_001919469.1| recombination protein F [Clostridium botulinum E3 str. Alaska E43]
 gi|226737778|sp|B2UX46|RECF_CLOBA RecName: Full=DNA replication and repair protein recF
 gi|188500980|gb|ACD54116.1| DNA replication and repair protein RecF [Clostridium botulinum E3
           str. Alaska E43]
          Length = 361

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 167/371 (45%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + ++ +RNY +L L       +F+GDN  GKTN+LE+I + +  +  R +   D+
Sbjct: 1   MYIKAIMLANYRNYNNLELNLSEGVNVFIGDNAQGKTNVLESIYYCAFAKSHRTSRDKDL 60

Query: 65  TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                + ++ S     + ++   DI I    RD +  + +++N + I  + EL     + 
Sbjct: 61  INWKENEAYISLLVGKKRLDKRIDIKI---LRDGK--KAIKVNSIKINKIGELFGTFNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   +I       RR+FLD  +  I  ++   ++ + +++  RN +L    F+    
Sbjct: 116 MFSPEDLKIIKESPGIRRKFLDMELCQISKKYYFNLVQYNKILNERNVILRSRDFNKDIL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+ E    I   R+E I+ ++        +       +        KF  +F   
Sbjct: 176 EVYDLQLVECADYIVKERLEYIDKINYYGKFIHNEITSGKEDIVFKYDSGIKFKDNF--- 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           K  + +KL +    D     T +GPHR D  V   +  +    GS G+Q+  ++ +  + 
Sbjct: 233 KYAFLEKLRNNLLRDREQGITSVGPHRDDFNVLINNIDVK-KFGSQGQQRTAVLTMKFSS 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA 362
            ++I   T   PILLLD++ + LD +++  +   ++DI  Q  +T T  +   D L++ +
Sbjct: 292 LKIIKEITKEYPILLLDDVLSELDINRKRYVLSTLSDI--QTIITCTGINDLEDYLDDKS 349

Query: 363 KFMRISNHQAL 373
           K   + N + +
Sbjct: 350 KVFNVCNGEIV 360


>gi|227543722|ref|ZP_03973771.1| recombination protein F [Lactobacillus reuteri CF48-3A]
 gi|300908787|ref|ZP_07126250.1| recombination protein F [Lactobacillus reuteri SD2112]
 gi|77745333|gb|ABB02567.1| recombinational DNA repair ATPase [Lactobacillus reuteri]
 gi|227186290|gb|EEI66361.1| recombination protein F [Lactobacillus reuteri CF48-3A]
 gi|300894194|gb|EFK87552.1| recombination protein F [Lactobacillus reuteri SD2112]
          Length = 374

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 150/373 (40%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRNY  L + F+    + +G N  GKTN+LEAI  LS  +  R ++  ++
Sbjct: 1   MILTELHLHHFRNYQDLTVHFNPGVNVLIGHNAQGKTNMLEAIYVLSLTKSHRTSNDHEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S     A + G    +   I LE +     +  ++N +    + +    L    
Sbjct: 61  INWQEKS-----ALISGTVEKSIGKIPLELQFSSKGKKAKVNHLEQARLSQYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR F+DR    +  ++      +  L+R +N+ L +       D 
Sbjct: 116 FAPEDLSLVKGSPALRRHFMDREFSQMSSKYLYNAGQYRTLLRQKNKYLKQLKYKQQTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQ 238
                +  Q+A  G ++ IAR   +  L     +  Q+ +     L L     L    + 
Sbjct: 176 VLLGVLSDQLAAFGAEVIIARQYFLKHLEGWAADLHQEISLNKESLQLEYVNQLKVNDET 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +     +   K   D  + +     T+ GPHR D+     DK +  A GS G+Q+   + 
Sbjct: 236 TAEEAYQALFKLYQDNEQREIEQGTTIYGPHRDDIRFLVNDKNV-QAFGSQGQQRTTALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+   TG  P+LLLD++ + LD  ++  L   + +   Q F+T T  S     
Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAIQNK-VQTFLTTTSLSDVARQ 353

Query: 358 LNETAKFMRISNH 370
           L        I + 
Sbjct: 354 LINEPTIFEIEHG 366


>gi|188584646|ref|YP_001916191.1| DNA replication and repair protein RecF [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|226737815|sp|B2A2Y9|RECF_NATTJ RecName: Full=DNA replication and repair protein recF
 gi|179349333|gb|ACB83603.1| DNA replication and repair protein RecF [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 386

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 176/384 (45%), Gaps = 17/384 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  FRNY++L+L F     +F G N  GKTN+LEAI +L+ G+  R     ++
Sbjct: 1   MKLTELCLKNFRNYSNLKLNFKKPIILFFGANAQGKTNLLEAIYYLATGKSHRAQKEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +  F+     +E  +    + I    ++ +  + L++N++         K + +  
Sbjct: 61  IRWETSGFY-LKGELEKEQAQYTLEIITNYQNGK-NKNLKVNNLSQTNTRNFLKTMNVVI 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
             P    +  G    RRRF+D+ +  +DP +   + ++ + +R RN+LL      ++   
Sbjct: 119 FSPEDLMLVKGTPDNRRRFIDQEITQVDPSYDFYLKNYFKALRQRNKLLKTYQDKNTLAQ 178

Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238
                  Q+   G KI + R E+I+ +  L     +K       L L      +F+    
Sbjct: 179 HLPPWNQQLVHYGSKIILKREEVIHKIRLLARLIYRKITNQTENLELDYSPSLEFEDCKF 238

Query: 239 ----SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
               S   L  ++   L +  + D   R T IGPHR DLI    +K      GS G+Q+ 
Sbjct: 239 REQLSGEKLAHKFLNTLNENLQSDIEKRTTSIGPHRDDLIFKINNKD-ARQFGSQGQQRT 297

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            ++ + +A   +I    G  PILLLD++ + LD++++  L   +T+   Q F+T T    
Sbjct: 298 TVLALKMAELEMIKGEKGEFPILLLDDVLSELDDNRKKHLLN-LTEGRVQTFVTSTSMED 356

Query: 355 FD---SLNETAKFMRISNHQALCI 375
           F+    +   ++  RI N +A+ +
Sbjct: 357 FNGDVDIKAKSQVFRIDNGEAVKL 380


>gi|58336358|ref|YP_192943.1| recombination protein F [Lactobacillus acidophilus NCFM]
 gi|227902591|ref|ZP_04020396.1| recombination protein F [Lactobacillus acidophilus ATCC 4796]
 gi|75507682|sp|Q5FN12|RECF_LACAC RecName: Full=DNA replication and repair protein recF
 gi|58253675|gb|AAV41912.1| DNA repair and genetic recombination protein [Lactobacillus
           acidophilus NCFM]
 gi|227869680|gb|EEJ77101.1| recombination protein F [Lactobacillus acidophilus ATCC 4796]
          Length = 375

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 154/376 (40%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FRN   L + FD    IF+G N  GKTN+LEAI FL+  R  R +S  D+
Sbjct: 1   MYLDHLTVQNFRNLKKLDVDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTSSDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F   +  + G    + +++ L     +  + + IN +    + +    L    
Sbjct: 61  I-----GFDGEYTNLAGHVQKSQVTLNLRVLITKKGKKVWINRIEQAKLSKYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D+    I+  +      + +++  +N  L +       D 
Sbjct: 116 FSPEDLELIKGAPSLRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL---DGKFD 237
            +   +  Q+A +  ++   R + +  LS    +     +    KLS+       D   D
Sbjct: 176 VFLDVLSDQLAGIAAELIYRRFKFLTYLSHYASDAYTHISLGSEKLSIAYHPSVSDITAD 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +   + ++        +  +     T  GPHR D+      K   + + S G+Q+ + +
Sbjct: 236 DTTEEIYQKILNSFNRNKASEIRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD      
Sbjct: 295 SIKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +   I +   
Sbjct: 354 DIIKKPRVYHIQSGTI 369


>gi|167770841|ref|ZP_02442894.1| hypothetical protein ANACOL_02194 [Anaerotruncus colihominis DSM
           17241]
 gi|167666881|gb|EDS11011.1| hypothetical protein ANACOL_02194 [Anaerotruncus colihominis DSM
           17241]
          Length = 379

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 101/374 (27%), Positives = 166/374 (44%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  + I++FRN ASL L       +  GDNG GKTN +EA+   +  + FR A  A +
Sbjct: 1   MRIDRIRITDFRNIASLELALCPGANVIYGDNGQGKTNFIEAVWMCTGAKSFRGAKDAQL 60

Query: 65  TRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+P           G E  A ++I+         R   +N+V ++   EL       
Sbjct: 61  VRFGAPQAAVEAGFYAAGREQKALLTIE-------KRRAAALNEVPLKSAAELAGQFCAV 113

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
              P+   +      E+RRF+D  +  I P++   +  + R++  RNRLL +  +++S  
Sbjct: 114 VFSPAHLTLVKNGPQEKRRFIDTSICQIKPKYIHVLNQYTRVLDQRNRLLKDIMYETSLF 173

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
                 +A++A  G  +   R   +  L+    E          K           D   
Sbjct: 174 DTLDIWDARLAAYGAVVIKTRATFLERLAPCAQEIYGGLAGGREKFGARYAPSLAVDPGA 233

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   +++   + L   R  D  +R T  GPHR D+ +   D     A GS G+Q+  ++ 
Sbjct: 234 SMSEIEQRALEDLRVHRGEDIRTRMTGAGPHRDDIDLTL-DGQSARAFGSQGQQRSCVLA 292

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA   LI  T G  P++LLD++ + LD  +R+ L   +   G QI MT  D S F  L
Sbjct: 293 LKLAECELIRETRGEYPVVLLDDVMSELDAARRDYLLNHLQ--GRQIIMTSCDGSDFKGL 350

Query: 359 NETAKFMRISNHQA 372
           + +   +RI + +A
Sbjct: 351 S-SGVSVRIEDGRA 363


>gi|167766861|ref|ZP_02438914.1| hypothetical protein CLOSS21_01378 [Clostridium sp. SS2/1]
 gi|167711409|gb|EDS21988.1| hypothetical protein CLOSS21_01378 [Clostridium sp. SS2/1]
 gi|291558401|emb|CBL37201.1| DNA replication and repair protein RecF [butyrate-producing
           bacterium SSC/2]
          Length = 361

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 162/373 (43%), Gaps = 19/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY  L + F +   +  GDN  GKTNILE+I   +  +  R     ++
Sbjct: 1   MIIKSLELKNYRNYDELSMNFASGTNLLYGDNAQGKTNILESIYLSATTKSHRGNKDREL 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +     +        +G++   D+ +K         + + I+ + IR   +L   + + 
Sbjct: 61  IKFEENEAHIRIHFEKQGIDHQLDMHLK-----KNKAKGVAIDRIPIRRSSDLLGQIPVI 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
              P   +I      ERR+FLD  +  ++  +  ++ ++ +++  RN LL +  F ++  
Sbjct: 116 LFSPEDLKIVKSGPSERRKFLDIELSQMERLYLYQLTNYNKILVQRNNLLKQIRFQNNLI 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               + + Q+ + G ++   R + I  L  +  +   K      K+ L    D  +D   
Sbjct: 176 ETLEAWDIQLVKYGSEVIKYREKFIKHLGEVCQKIHNKLTGGKEKILLEYDRDVGYD--- 232

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                 Y  +L   R+ D     T +GPHR D+        I   +GS G+Q+   + + 
Sbjct: 233 -----SYLTELAKKRQKDLKYSTTTVGPHRDDISFIVNGIDIR-KYGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA  +L+      +PILLLD++ + LD +++  L   + D  + I  TG D+ +   L  
Sbjct: 287 LAQIQLMREVMKESPILLLDDVLSELDSNRKTYLLESIKDTQTIITCTGLDEFISKHLP- 345

Query: 361 TAKFMRISNHQAL 373
             +  +I   + +
Sbjct: 346 IQRMFQIKAGKIV 358


>gi|227893835|ref|ZP_04011640.1| recombination protein F [Lactobacillus ultunensis DSM 16047]
 gi|227864324|gb|EEJ71745.1| recombination protein F [Lactobacillus ultunensis DSM 16047]
          Length = 375

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 153/376 (40%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    +  FRN   L + FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++
Sbjct: 1   MYLDRFTVQNFRNLKKLDVKFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       +  + G    + + + L     +  + + IN V    + +    L    
Sbjct: 61  IGFGGE-----YTNLLGHVQKSQVDLTLRVLITKKGKKVWINRVEQSKLSKYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D+    I+P +      + +++  +N  L +       D 
Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINPEYLYFASKYRQVLIQKNNYLKQLSKGKAKDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL---DGKFD 237
            +   +  Q+A +  ++   R + +  LS    +     +    +L++       D K D
Sbjct: 176 VFLDVLSDQLAGIAAEVISRRFKFLRYLSHYASDAYAHISLGSEQLAIAYHPSVSDIKAD 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   +  +        +  +     T  GPHR D+      K   + + S G+Q+ + +
Sbjct: 236 DSTEDIYHKILASFERNKDTEIRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD      
Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +   I + + 
Sbjct: 354 EIIKKPRVYHIQSGKI 369


>gi|125974859|ref|YP_001038769.1| DNA replication and repair protein RecF [Clostridium thermocellum
           ATCC 27405]
 gi|256003885|ref|ZP_05428872.1| DNA replication and repair protein RecF [Clostridium thermocellum
           DSM 2360]
 gi|281418686|ref|ZP_06249705.1| DNA replication and repair protein RecF [Clostridium thermocellum
           JW20]
 gi|166220707|sp|A3DHZ7|RECF_CLOTH RecName: Full=DNA replication and repair protein recF
 gi|125715084|gb|ABN53576.1| DNA replication and repair protein RecF [Clostridium thermocellum
           ATCC 27405]
 gi|255992223|gb|EEU02318.1| DNA replication and repair protein RecF [Clostridium thermocellum
           DSM 2360]
 gi|281407770|gb|EFB38029.1| DNA replication and repair protein RecF [Clostridium thermocellum
           JW20]
 gi|316939070|gb|ADU73104.1| DNA replication and repair protein RecF [Clostridium thermocellum
           DSM 1313]
          Length = 369

 Score =  323 bits (829), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 168/373 (45%), Gaps = 13/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  FRNY    + F     I  G N  GKTNI+EA+   + GR  R +   ++
Sbjct: 1   MYIDRILLKNFRNYKDETIKFSKNLNIIYGQNAQGKTNIIEAVFLCASGRSHRTSKDTEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             I   + FS    +E  EG   I I  E       + ++IN++ ++ +  L  +L    
Sbjct: 61  VNIDG-TGFSVLLDLESSEGRKKIEIDYECG---KKKVVKINEIPLKKIGNLMGNLLAVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    I      ERRRF+D  +  + P +   +  + +++  RN LL E  +  +   
Sbjct: 117 FSPEDILIIKEGPSERRRFIDITLCQLKPSYFYDLQQYNKVLSQRNMLLKEIQYKRNLLD 176

Query: 185 ---SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI--KLSLTGFLDGKFDQS 239
                + +MAEL  +I   R E I  L  +  +   K        ++  +  +D     +
Sbjct: 177 TLEVWDYKMAELSSRIMTTRSEFIKRLCEISKKIHLKLTDGSEIMEIKYSPSVDLHDLSN 236

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +K E+ ++L   R ++     TLIGPHR D  ++     + +  GS G+Q+  L+ +
Sbjct: 237 PSEIKNEFIRQLNSIRDIELKRCVTLIGPHRDDYEMELNGLNLKM-FGSQGQQRTSLLSL 295

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA   +I + T   P+LLLD++ + LD  +R  L   +     Q F+T TDK +F++ N
Sbjct: 296 KLAEIEIIKSETDEDPVLLLDDVMSELDFKRREFLLENIR--NVQTFITCTDKELFENRN 353

Query: 360 -ETAKFMRISNHQ 371
                ++R+   +
Sbjct: 354 FGDNLYIRVEAGR 366


>gi|225028835|ref|ZP_03718027.1| hypothetical protein EUBHAL_03122 [Eubacterium hallii DSM 3353]
 gi|224953831|gb|EEG35040.1| hypothetical protein EUBHAL_03122 [Eubacterium hallii DSM 3353]
          Length = 366

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 163/370 (44%), Gaps = 19/370 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++ +RN+ SL++ F     IF GDN  GKTN+LE+I      R  R +   D+
Sbjct: 1   MFVESIELNNYRNFDSLKVEFSPGVNIFFGDNAQGKTNLLESIYVSGTLRSHRGSRDKDL 60

Query: 65  TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G        F R + +    D+ +K         + + +N V +R   EL   + I 
Sbjct: 61  IRFGEDEAHIRLFFRKDSLSHRLDVHLK-----KNKSKGVAVNGVPVRRSGELLGMMHIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I       RRRFLD  +  ID  + ++++ + +++  RN LL +     +  
Sbjct: 116 FFSPEDLSIIKEGPAGRRRFLDMELSQIDKGYMQQLVAYSKILNERNNLLKQINLYPALI 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+   G  +   R E +  L  ++ +   +      ++ +    + +     
Sbjct: 176 DTLDGWDEQLLAAGQFLIKKREEFVYFLDEMMAKIHGQLTGGKEQIKVEYEKNVE----- 230

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E++ ++L+  R  D  S  T +GPHR DL        I    GS G+Q+   + + 
Sbjct: 231 ---AEKFREQLYSKRNKDISSGTTSVGPHRDDLRFKVGGIDIR-KFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+  RLI   TG  PILLLD++ + LD  +++ L   + DI + I  TG D  V   ++ 
Sbjct: 287 LSEIRLIEQVTGEKPILLLDDVLSELDAGRQSWLLESIQDIQTLISCTGLDDFVNSRISL 346

Query: 361 TAKFMRISNH 370
             K  R+   
Sbjct: 347 D-KVFRVKEG 355


>gi|161936342|ref|YP_128267.2| recombination protein F [Photobacterium profundum SS9]
          Length = 359

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 164/369 (44%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN  +  L    +    VG NG GKT++LEAI +L  GR FR    + V
Sbjct: 1   MALTRLIVKDFRNIEACDLALSPRFNFLVGANGSGKTSVLEAIHYLGHGRSFRSHLTSRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      F    RV       ++ + +  + D +   ++++    + + +L + L +  
Sbjct: 61  IRHEQQELF-IHGRV-LTNNQLELPLGINKKRDGTT-EVKVSGESGQKLSQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +  G    RR F+D  VF I+P+        +RL + RN LL          S
Sbjct: 118 ITPEGFELLIGGPKYRRSFIDWGVFHIEPKFYNAWSRIKRLTKQRNALLKTARSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I++ R E + A+     E  Q    P  ++ L+ +   + +       
Sbjct: 177 YWDQELAVLAEEISVWRDEYLIAVKQKAAEICQ-GFLPEYEIQLSYYRGWEKETP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T+ GPH++DL +      +     S G+ K+++  + LA  
Sbjct: 231 --YAELLKRNFERDCQLGYTVNGPHKADLRMKVSGTPVEDVL-SRGQLKLMVCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-DKSVFDSLNETAK 363
             ++  TG   I L+D+ ++ LD  +R  L + + +  +Q+F++   ++ + D  +E  K
Sbjct: 288 LHLTEATGKQCIYLIDDFASELDSHRRALLAQRLKETNAQVFISAISNEQIADMHDENGK 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 MFHVEHGKI 356


>gi|146337178|ref|YP_001202226.1| recombination protein F [Bradyrhizobium sp. ORS278]
 gi|146189984|emb|CAL73976.1| DNA replication and repair protein recF [Bradyrhizobium sp. ORS278]
          Length = 378

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 142/370 (38%), Positives = 207/370 (55%), Gaps = 3/370 (0%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L+++ FR+Y +  +   A     VG NG GKTN LEAISF +PGRG RRA+  DV 
Sbjct: 5   RINRLSLTHFRSYRAAGVSVQADMVALVGANGAGKTNCLEAISFFAPGRGLRRATLEDVA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++  A +EG  GLA     +E    D  + R  +I+   +        H+R+ 
Sbjct: 65  DNQGDGSWAISAEIEGALGLATFGTGIEPPRGDASTTRRCRIDREPVGSAAAFGDHIRMV 124

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL PSMD +F G + ERRRF DR+V AID  H  R+   ER +R RNRLL    FD  WC
Sbjct: 125 WLTPSMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNFDDHWC 184

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242
            +IE + AEL V +  +R +    L++++ +      FP  +++L G+++     +   A
Sbjct: 185 DAIERETAELAVAVAASRGQTAVKLAAMLRQRGAASAFPSAEIALDGWMENALLTEPALA 244

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++ Y   L D R  D+ + RTL GPH +DL V Y  K +     STGEQK +L+G+ LA
Sbjct: 245 VEDRYRALLRDNRARDAAAGRTLDGPHLTDLHVIYAPKNMPARDASTGEQKALLIGLILA 304

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA L++ TTG  P+LLLDEI AHLD  +R ALF  +  +G+Q+++TG D + F  L E  
Sbjct: 305 HATLVAETTGIVPMLLLDEIVAHLDPGRRTALFAELGTLGAQVWLTGADPAAFAELRELG 364

Query: 363 KFMRISNHQA 372
           +   +   + 
Sbjct: 365 EIFDVEGGRI 374


>gi|158422636|ref|YP_001523928.1| recombination protein F [Azorhizobium caulinodans ORS 571]
 gi|158329525|dbj|BAF87010.1| DNA replication and repair protein [Azorhizobium caulinodans ORS
           571]
          Length = 378

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 139/374 (37%), Positives = 218/374 (58%), Gaps = 5/374 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
             R +++ L +S FR+Y++ ++       +  G NG GKTNILEA+S LSPGRG RRA+ 
Sbjct: 3   APRARVRRLTLSRFRSYSAAQIEVADGPVVLTGPNGAGKTNILEAVSLLSPGRGLRRAAL 62

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHL 120
               + G    ++  A VEG  G  D+    + +R D S R  +I+   +   +    HL
Sbjct: 63  DAFAQAGGDGSWAVAAHVEGALGPVDLGTGSDASRPDGSTRRCRIDRESVSSANAFLDHL 122

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           ++ WL P MD +F+G   +RRRFLDR+V A+D  H  R+   ER +R RNR+L +G  D+
Sbjct: 123 KVVWLTPEMDGLFTGPPADRRRFLDRLVLAVDASHGTRVNALERALRSRNRVLEDG-GDN 181

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKF-DQ 238
              S++E ++AELGV +  AR+E +  L+  I  +  + + FPH  ++L G L+    D 
Sbjct: 182 RMLSAVEHELAELGVAVAAARLETVQRLAGEIAAHADETSPFPHADIALDGALERMLTDA 241

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +++ Y   L D R  D  + RTL GPH  DL+V +  K +  A  STGEQK +L+G
Sbjct: 242 PAVEVEDRYRALLQDNRPRDRAAGRTLEGPHLCDLVVAHGPKGLPAARCSTGEQKSLLIG 301

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + L+HARL++   G AP++LLD++ A+LD ++R+ +F  +  +G+Q++MTG D S F +L
Sbjct: 302 LALSHARLVTAMQGLAPVVLLDDVVAYLDAERRSGMFAALKALGAQVWMTGADPSAFAAL 361

Query: 359 NETAKFMRISNHQA 372
           +  A+   +S    
Sbjct: 362 DG-AERFTVSPGAV 374


>gi|291165886|gb|EFE27933.1| DNA replication and repair protein RecF [Filifactor alocis ATCC
           35896]
          Length = 355

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 174/368 (47%), Gaps = 18/368 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L +  FRNY  L L+F     +FVG NG GKTN+LEAIS  S GR FR     D+
Sbjct: 1   MKIHQLTLKNFRNYEQLELLFKEGANVFVGQNGQGKTNVLEAISLFSVGRSFRTVRDLDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +  +  A VE + G   I +KL     ++V+   IN V I  + +L   L I  
Sbjct: 61  VAFGQDAA-TVSAIVENLHGRYTIDMKLGKSIKKAVK---INSVPIEKLQDLFGVLNIVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   ++      ERR FLDR +  + PR+ R + ++ +++  RN LL +   D     
Sbjct: 117 FSPDDLKLVKDGPKERRLFLDREISQLKPRYYRILSEYYKVLNQRNTLLKQE-VDEVLLE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               Q+A+ G +I+  R E I  +     E   K +     L +    +      +   +
Sbjct: 176 IYTQQIAKSGFQIHKMREEFIEHIREFAQEIHSKISSKKEVLEIEYEPNV-----YAISE 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           EEY + L DG++ D + + +  G H+ D+ +   +  I    GS G+++   + + L+  
Sbjct: 231 EEYFRYLMDGKEHDFIRKHSTRGIHKDDVALVINEMDIR-HFGSQGQKRSAAISLKLSEI 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           ++I   TG  PI+LLD+I + LD  ++  L   VT   +Q+F+T  +K       +  K 
Sbjct: 290 QMIYQDTGEYPIVLLDDIFSELDYSRQRMLLDYVT--NTQVFVTTAEK-----FLDNGKI 342

Query: 365 MRISNHQA 372
             + N + 
Sbjct: 343 YAVENGKI 350


>gi|266620981|ref|ZP_06113916.1| DNA replication and repair protein RecF [Clostridium hathewayi DSM
           13479]
 gi|288867362|gb|EFC99660.1| DNA replication and repair protein RecF [Clostridium hathewayi DSM
           13479]
          Length = 361

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 19/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  +RNY  L + F     I  GDN  GKTNILEAI   +  +  R +   ++
Sbjct: 1   MIIESIELKNYRNYDKLHMDFSHGTNILYGDNAQGKTNILEAIYVCATTKSHRGSKDKEI 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +     S      R   +    D+ +K         + + +N V I+   EL   + + 
Sbjct: 61  IQFDRDESHIKLNVRKRDVPYRIDMHLK-----KNRAKGVAVNGVPIKKASELFGIVNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    +      ERRRF+D  +  ++  +   ++ + +++  RN+LL +  F   + 
Sbjct: 116 FFSPEDLNLIKNGPAERRRFIDLELCQLNKLYVHSLVQYNKIITQRNKLLKDIMFRPDYE 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ + G ++   R   ++ L+ LI    ++ +     L +    +   D   
Sbjct: 176 ETLDIWDMQLVQYGREVIRCREAFVSQLNDLIGTIHRQLSGEKESLHICYEPNVTADM-- 233

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                 +   L   R  D   R TL GPHR DL     D  I    GS G+Q+   + + 
Sbjct: 234 ------FEDTLRKSRPSDLKQRTTLTGPHRDDLSFIINDIDIR-RFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L+       PILLLD++ + LD  ++N L   +  I + I  TG +  V +    
Sbjct: 287 LAEIELVKKIVNDYPILLLDDVLSELDGSRQNHLLSGINHIQTMITCTGLEDFVNNRFRI 346

Query: 361 TAKFMRISNHQALC 374
             K  ++ + +   
Sbjct: 347 D-KIFKVVSGEVYS 359


>gi|225377588|ref|ZP_03754809.1| hypothetical protein ROSEINA2194_03238 [Roseburia inulinivorans DSM
           16841]
 gi|225210564|gb|EEG92918.1| hypothetical protein ROSEINA2194_03238 [Roseburia inulinivorans DSM
           16841]
          Length = 363

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 163/372 (43%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + +  FRNY  L + FD    IF GDN  GKTNILEA       +  + +   ++
Sbjct: 1   MIIKSIELQNFRNYEDLNISFDEGTNIFYGDNAQGKTNILEAAYLSGTTKSHKCSKDKEM 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   S   T    +  E   D+ +K         + + IN V I+   EL   L + 
Sbjct: 61  IRFGEQESHIRTVVVKKEKEYQIDMHLKHNRS-----KGIAINKVPIKKASELFGILNMV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRFLD  +  +D  +   +  + +++  RN+LL +  +     
Sbjct: 116 FFSPEDLNIIKNGPAERRRFLDSELCQLDKIYLSDLTTYNKILNQRNKLLKDMVYRPDLK 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ E G KI   R + ++ L+ ++ +   + +     L L      +++ S 
Sbjct: 176 DTLPVWDMQLVETGRKIIRRRKQFVDELNEIVHDIHYRISGEKEDLLL------QYEPSI 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +   +  +L   ++ D     T +GPHR DL+    +  I    GS G+Q+   + + 
Sbjct: 230 EDIF--FEDELSRVKERDMRQCMTSVGPHRDDLLFSIGEVDIR-KFGSQGQQRTSALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+  +    P+LLLD++ + LD +++N L   + D  + I  TG D+ V +  + 
Sbjct: 287 LSEIELVKRSIHDTPVLLLDDVLSELDSNRQNYLLNSIHDTQTLITCTGLDEFVKNRFHI 346

Query: 361 TAKFMRISNHQA 372
             K  ++     
Sbjct: 347 N-KIFKVVQGTV 357


>gi|90413730|ref|ZP_01221718.1| recombination protein F [Photobacterium profundum 3TCK]
 gi|90325199|gb|EAS41696.1| recombination protein F [Photobacterium profundum 3TCK]
          Length = 359

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 164/369 (44%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN  +  L    +    VG NG GK ++LEAI +L  GR FR    + V
Sbjct: 1   MALTRLIVKDFRNIEACDLALSPRFNFLVGANGSGKNSVLEAIHYLGHGRSFRSHLTSRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      F    RV   +   ++ + +  + D +   ++++    + + +L + L +  
Sbjct: 61  IRHEQQELF-IHGRV-LTDNQLELPLGINKKRDGTT-EVKVSGESGQKLSQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +  G    RR F+D  VF I+P+        +RL + RN LL          S
Sbjct: 118 ITPEGFELLIGGPKYRRSFIDWGVFHIEPKFYNAWSRIKRLTKQRNALLKTARSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I++ R E + A+     E  Q    P  ++ L+ +   + +       
Sbjct: 177 YWDQELAVLAEEISVWRDEYLIAVKQKAAEICQ-GFLPEYEIQLSYYRGWEKETP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T+ GPH++DL +      +     S G+ K+++  + LA  
Sbjct: 231 --YAELLKRNFERDCQLGYTVNGPHKADLRMKVAGTPVEDVL-SRGQLKLMVCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-DKSVFDSLNETAK 363
             ++  TG   I LLD+ ++ LD  +R  L + + +  +Q+F++   D+ + D  +E  K
Sbjct: 288 LHLTEATGKQCIYLLDDFASELDSHRRALLAQRLKETNAQVFISAISDEQITDMHDENGK 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 MFHVEHGKI 356


>gi|168335261|ref|ZP_02693362.1| DNA replication and repair protein RecF [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 359

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 166/372 (44%), Gaps = 17/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L+++ FRNY  L L       IF GDN  GKTN+LEAI   +  R  R  S  +V
Sbjct: 1   MYISTLSLTNFRNYQHLSLSLSKGINIFFGDNAQGKTNVLEAIYLCATARSHRTTSEKEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  S +     A V  M         ++    +  + + +N + I  + +L   L + +
Sbjct: 61  IKWDSEN-----ALVNLMLTKQYSLSTIDFIISKRYKSVLVNKLPINKLTKLFGVLNVVF 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSW 182
             P    +      +RRRF+D  +  +D  +  ++  + ++++ RN  L +     +  +
Sbjct: 116 FAPENLDLIKKSPKDRRRFIDIELCQLDSMYVSQLSSYHKILKQRNCYLKQNVNNINYEF 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              ++  + +   KI   R E I  L++       + +     L L    +   +     
Sbjct: 176 LDILDENLYKYAKKIFYKRSEFIENLNTKAAAIHLELSGGKEHLKLIYEPNVDINI---- 231

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
               +  +L   R  D  ++ T  GPHR D+     D ++ +  GS G+Q+  ++ I  A
Sbjct: 232 ----FKSRLKFNRDRDIRTKTTNSGPHRDDINFLMNDHSLKL-FGSQGQQRTCILSIKFA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I+  TG  PILLLD+I + LD +++  LF+ + ++ + I  TG D ++F + N++ 
Sbjct: 287 QIDIITEITGETPILLLDDILSELDINRQKYLFKYINNLQTMITCTGVDPNLF-TWNDSI 345

Query: 363 KFMRISNHQALC 374
           K   +     +C
Sbjct: 346 KVFIVEKANIIC 357


>gi|319403603|emb|CBI77188.1| DNA replication and repair protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 370

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 166/369 (44%), Positives = 224/369 (60%), Gaps = 6/369 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RNY SL L     H +F G NG GKTN+LEA+SFLSPGRG RRA+Y+D+
Sbjct: 1   MAVRQLKLENYRNYCSLVLHLLGHHVVFTGRNGAGKTNLLEALSFLSPGRGLRRAAYSDI 60

Query: 65  T-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           +   GS + F  FAR++  + G A+I   LE  D    R + IN V     D L  +  I
Sbjct: 61  SYSEGSGTGFVVFARLQCALYGEANIGTALEVNDG--GRKVHINGVNEAS-DCLMDYCHI 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           S L PSMD +F G +++RRRFLDRMV +ID  H RR+ D++R+MR RNRL  +G  D  W
Sbjct: 118 SILTPSMDGLFIGPALDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDGNNDRVW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFC 241
             ++E QMAEL   I  ARV++I  L+    +      FP   L + GFL+    + S  
Sbjct: 178 LDALEVQMAELATAIAAARVDVIQLLNDTFAQVSSCVPFPRAFLQVDGFLEKALREMSAI 237

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            ++E++  +L + R +D ++ RTL GPHR+DL V Y DK +     STGEQK +L G+ L
Sbjct: 238 EVEEQFLNRLRNNRAIDCVAGRTLEGPHRTDLQVFYADKNMNATLCSTGEQKALLAGLVL 297

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
            HARL S  +   PI LLDEI+AH D  +R ALF I+ D+G Q FMTGTD  +FDSL   
Sbjct: 298 CHARLTSMISNMTPIFLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHILFDSLKGR 357

Query: 362 AKFMRISNH 370
           A+F  I N 
Sbjct: 358 AEFFEIENG 366


>gi|15893302|ref|NP_346651.1| recombination protein F [Clostridium acetobutylicum ATCC 824]
 gi|20978635|sp|Q97N32|RECF_CLOAB RecName: Full=DNA replication and repair protein recF
 gi|15022821|gb|AAK77991.1|AE007513_4 RecF, ABC family ATPase [Clostridium acetobutylicum ATCC 824]
 gi|325507411|gb|ADZ19047.1| recombination protein F [Clostridium acetobutylicum EA 2018]
          Length = 363

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 162/370 (43%), Gaps = 12/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  FRNY ++ + F+ +  I  G+N  GKTNILE+I + S G+  R     ++
Sbjct: 1   MYIKNLYLDNFRNYDNIEIDFNKKVNILTGNNAQGKTNILESIFYCSLGKSHRTNKDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F    R+       D  I+++       + + IN + ++ + EL     +  
Sbjct: 61  IKWDKDEAFI---RLNLSRKPLDKKIEIKIFKGGK-KGININSIKLKKISELFGIFNVVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-DSSWC 183
             P   +I       RR+FLD  +  +D R+  +++ + +++  RN +L    F ++   
Sbjct: 117 FSPEDLKIVKESPGHRRKFLDMEISKLDHRYYYKLVQYNKILDQRNIMLRNKKFLNNDMI 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S  + Q+++ G  +  +R++ +N L+               ++  T     K  ++   +
Sbjct: 177 SVYDEQLSKFGSSLIESRIKYLNKLNEKGKIIHSDITKGKEEIEFTYLTHVKGREN---I 233

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            EE      D  K D     T +GPHR D  +   +     + GS G+Q+  ++ I  A 
Sbjct: 234 SEELFSLFKDSYKRDVEKGNTSVGPHRDDFSIKI-NGIDARSFGSQGQQRTSVLTIKFAS 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNETA 362
            ++I   +   P+LLLD++ + LDE ++  +   +   G Q  +T T     +  L    
Sbjct: 293 IQIIKEISSETPVLLLDDVLSELDESRQEYILNSLE--GIQTLITCTGIGDIEKYLKNDF 350

Query: 363 KFMRISNHQA 372
              RI N + 
Sbjct: 351 NVFRIDNGRI 360


>gi|260887488|ref|ZP_05898751.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC
           35185]
 gi|330837870|ref|YP_004412450.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC
           35185]
 gi|260862775|gb|EEX77275.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC
           35185]
 gi|329745634|gb|AEB98990.1| DNA replication and repair protein RecF [Selenomonas sputigena ATCC
           35185]
          Length = 369

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 163/376 (43%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K K L +  FRNY  L L       +F+G+N  GKTNI EA+ + + GR  R  + AD+
Sbjct: 1   MKAKSLRLKCFRNYEELDLSLSPNINVFLGENAQGKTNIAEALYYAAIGRSHRTNADADL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123
               +P+     A++  +    D+   LE +  R  R  ++ N   I+   EL       
Sbjct: 61  IAWDAPA-----AKIGLLFERLDVENTLEFQFQRGRRRSIRKNGEPIKT-KELFGVFNAV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181
              P    +  G   ERRRFLD  +    P +   ++ + R++  RN LL +     +  
Sbjct: 115 LFSPEDLFLIKGAPAERRRFLDGEISQASPSYGHELMQYTRILTQRNSLLKKIRERRAGK 174

Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              S  + Q+A+    I   R   +  L+ L     ++ +     LSL+  L G  ++  
Sbjct: 175 EMLSLWDEQLAKSAAHIVEKRFLAVKKLNMLANLMQRRISAGKENLSLSYELCGAEEEPP 234

Query: 241 CALKE---EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           C  +E    Y KKL +   +D +   T +GP R D+ ++     +  + GS G+Q+  ++
Sbjct: 235 CVTEELVPWYNKKLEESLDLDVLRGSTSVGPQRDDIRLEVNGVNLR-SFGSQGQQRTGVL 293

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + L+    + + TG  P+LLLD++ + LD  +R  L   +     Q  +T TD +    
Sbjct: 294 ALKLSELEFLRSETGEYPVLLLDDVMSELDGTRREKLLDFIGREHIQTLLTATDAAYLPE 353

Query: 358 LNETAKFMRISNHQAL 373
                    +   +  
Sbjct: 354 -KFMGNIFHVRAGKIF 368


>gi|328541627|ref|YP_004301736.1| DNA replication and repair protein recF [polymorphum gilvum
           SL003B-26A1]
 gi|326411379|gb|ADZ68442.1| DNA replication and repair protein recF [Polymorphum gilvum
           SL003B-26A1]
          Length = 377

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 155/376 (41%), Positives = 225/376 (59%), Gaps = 7/376 (1%)

Query: 1   MTNRI--KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           M++R+   I+ L +++FRNY+ L L   A     VGDNG GKTNILEAIS L+ GRG RR
Sbjct: 1   MSSRVSVAIERLTLTDFRNYSLLVLEPSAPLVALVGDNGAGKTNILEAISLLTAGRGLRR 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           A+ AD+ R+  P  ++  A +    G  +  I        + R ++I+    R  + L  
Sbjct: 61  AALADIARLDGPGGWAISALLRTQAG--ETVIGTGYTPGEAGRRVRIDGTEARSSEALLD 118

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           HLR+ WLVPSMD +F+G   ERRRFLDR+  ++DP H RR+ D+ER +R RNRLL EG  
Sbjct: 119 HLRVLWLVPSMDGLFTGPGSERRRFLDRLTLSLDPTHGRRVNDYERALRQRNRLLEEG-G 177

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFD 237
            +++  SIE Q+AELG  + +AR E ++ L   I  +      FP   L++ G  + +  
Sbjct: 178 SAAYLDSIERQVAELGAAVALARGETVSLLQGCIDAQAATGLPFPRALLAVDGEFEVETQ 237

Query: 238 QSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
               + +E+   + L DGR  D  + RTL GPHRSDL+V +  K I  A  STGEQK +L
Sbjct: 238 GLGASDREDRLRRMLRDGRTRDRAAGRTLCGPHRSDLVVQHAAKGIPAAQSSTGEQKALL 297

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           VG+ LAHA L +   G  P+LLLDEI+AHLD  +R ALF  +  +  Q+ MTGTD  +F+
Sbjct: 298 VGLILAHADLTAAVAGMTPVLLLDEIAAHLDPGRRAALFSRLEALACQVVMTGTDAGLFE 357

Query: 357 SLNETAKFMRISNHQA 372
           ++   ++ + ++ ++A
Sbjct: 358 AMPAGSEILAVAGNRA 373


>gi|121602459|ref|YP_989526.1| recombination protein F [Bartonella bacilliformis KC583]
 gi|120614636|gb|ABM45237.1| DNA replication and repair protein recF [Bartonella bacilliformis
           KC583]
          Length = 378

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 163/374 (43%), Positives = 225/374 (60%), Gaps = 6/374 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ +  L ++ +RNY  L + F ++H +F G NG GKTN+LEA+SFL+PGRG RRA+Y+
Sbjct: 2   HRVAVTQLKLAHYRNYHFLNVNFSSRHVVFTGHNGAGKTNLLEALSFLAPGRGLRRAAYS 61

Query: 63  DV-TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           DV    G    F  FAR++  + G   I   LE     S R L IN       D L  + 
Sbjct: 62  DVSCSRGEGEGFVVFARLQCALYGEVSIGTALEAGG--SNRRLHINGEN-EACDCLTDYC 118

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            IS L PSMD +F G +++RRRFLDRMV AID  H RR+ D+++ MR RNRL  +G  D 
Sbjct: 119 HISALTPSMDGLFMGPTLDRRRFLDRMVLAIDSLHGRRIADYDKAMRARNRLFADGNDDR 178

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-S 239
           +W +++E QMAEL   I  AR++++  L+   ++      FP   L + G L+    + S
Sbjct: 179 AWFNALEMQMAELATAIAAARIDVVQLLNDTFVQMSASIPFPRAFLQIDGSLEEALRKMS 238

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++EE+  +L   R MD  + RTL GPHR+DL V Y DK +  A  STGEQK +L+G+
Sbjct: 239 AVDVEEEFLDRLRRNRAMDRAAGRTLEGPHRTDLQVFYADKNMAAASCSTGEQKALLIGL 298

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L HA L    +  API LLDE++AHLD  +R ALF I+ D+G Q FMTGTD+ +FDSL 
Sbjct: 299 VLCHAHLTGVMSNMAPIFLLDEMAAHLDFYRRAALFDILDDLGGQTFMTGTDRILFDSLK 358

Query: 360 ETAKFMRISNHQAL 373
             A+F  I +   L
Sbjct: 359 GRAEFFEIEDGALL 372


>gi|319406519|emb|CBI80161.1| DNA replication and repair protein [Bartonella sp. 1-1C]
          Length = 370

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 166/369 (44%), Positives = 225/369 (60%), Gaps = 6/369 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RNY SL L     H +  G NGVGKTN+LEA+SFLSPGRG RRA+Y+D+
Sbjct: 1   MAVRQLKLENYRNYCSLALHLLGHHVVLTGRNGVGKTNLLEALSFLSPGRGLRRAAYSDI 60

Query: 65  -TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
               G  + F  FAR++  + G A+I   LE  D    R + IN V    +D L  +  I
Sbjct: 61  SCSEGGGTGFVVFARLQCTLYGEANIGTALEVNDG--GRKVHINGVN-EAIDCLMDYCHI 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           S L PSMD +F+G +++RRRFLDRMV +ID  H RR+ D++R+MR RNRL  +G  D  W
Sbjct: 118 SILTPSMDGLFTGPALDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDGNDDRVW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFC 241
             ++E QMAEL   I  ARV++I  L+ +  +      FP   L + G L+    + S  
Sbjct: 178 LDALEVQMAELATAIAAARVDVIQLLNDMFAQVSSCIPFPRAFLQVDGCLEKALREMSAI 237

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            ++E++  +L + R +D ++ RTL GPHR+DL V Y DK I     STGEQK +L G+ L
Sbjct: 238 EVEEQFLSRLRNNRAIDCVAGRTLEGPHRTDLKVFYADKNINATLCSTGEQKALLTGLVL 297

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
            HARL S  +   PILLLDEI+AH D  +R ALF I+ D+G Q FMTGTD  +FDSL   
Sbjct: 298 CHARLTSMISNMTPILLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHILFDSLKGR 357

Query: 362 AKFMRISNH 370
           A+F  I N 
Sbjct: 358 AEFFEIENG 366


>gi|332971207|gb|EGK10170.1| recombination protein F [Desmospora sp. 8437]
          Length = 372

 Score =  322 bits (825), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 100/375 (26%), Positives = 158/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRN   L+L    +  +FVG N  GKTNILE++  L+ G+  R  S+ ++
Sbjct: 1   MYVERLELKQFRNIEHLKLDCSGELHMFVGPNAQGKTNILESLYVLAIGKSHRTRSHREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R          A V G E    + I+L  R  R +R    N V  R + E    L    
Sbjct: 61  IRWEQTGAL-LKAEVSGKESARRLEIRLTPRGKRVLR----NGVEQRRLSEYIGSLTAVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    I  G    RRRFLD  +  + P +   +  + +L++ RN LL E        +
Sbjct: 116 FAPEDLSIVKGSPQVRRRFLDMEIGQVSPAYIYHLTRYNQLLQQRNSLLKELGKGWGKQT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +    +  Q+  L   +   R   +N LS    E           L+L        +   
Sbjct: 176 ALLDVLNEQLVGLSTHLWSKRFSFVNILSRWAQEIHHSITQGSESLTLQYRPLAAVEPGM 235

Query: 241 --CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
              +++E   ++L   R+ +     TLIGPHR DL +   +       GS G+Q+   + 
Sbjct: 236 DRSSMEEALTRELMQVREQEIQRGTTLIGPHRDDLRIA-ANGTDLHTFGSQGQQRTAALS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   LI   TG  PILLLD++ + LD+ ++  L   +     Q F+T T     D  
Sbjct: 295 LKLAEIELIHQETGTYPILLLDDVLSELDDGRKTHLLEAIRG-RVQTFVTTTGLEGIDRE 353

Query: 358 LNETAKFMRISNHQA 372
             E A+  R+     
Sbjct: 354 TLERARIRRVHQGSI 368


>gi|184154480|ref|YP_001842820.1| recombination protein F [Lactobacillus fermentum IFO 3956]
 gi|226737808|sp|B2GEV1|RECF_LACF3 RecName: Full=DNA replication and repair protein recF
 gi|183225824|dbj|BAG26340.1| DNA replication and repair protein RecF [Lactobacillus fermentum
           IFO 3956]
          Length = 373

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 158/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +S +RNY  L + F     + +G+N  GKTN+LEAI  L+  +  R A   ++
Sbjct: 1   MILQELQLSHYRNYEELAVTFAPGINVLIGENAQGKTNLLEAIYLLAFTKSHRTAKDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       ARV G+   A   + LE +   S + +++N +  + +     +L +  
Sbjct: 61  IGWHQK-----LARVSGVVERASGRLPLEVQISTSGKRVKVNHLFQKRLSTYVGNLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G  + RR+F+D     +  ++   +  F + +  RN  L +       D 
Sbjct: 116 FAPEDLALVKGAPVNRRQFMDMEFGQMSSKYLYNVSRFNQQLAQRNAYLRQFKYGQQSDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
                I  Q+A +G ++ +AR +++  L     E     +    +LSL      + D   
Sbjct: 176 ILLGVITDQLASVGGEVVVARQQLVKRLGKWAAELHHHISKQKEELSLQYVSQVEVDDQT 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +      +  +   +  + +     +LIGP R D+      + +    GS G+Q+   + 
Sbjct: 236 TEEEAVAQLRRLYSENEEREIEHGTSLIGPQRDDIHFIVNGQNV-QRFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+   TG  P+LLLD++ + LD+D++  L   + D   Q F+T T  S     
Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDDDRQTHLLTAIQDK-VQTFITTTSLSGVARQ 353

Query: 358 LNETAKFMRISNH 370
           L        I + 
Sbjct: 354 LIHHPTIFTIQSG 366


>gi|227514122|ref|ZP_03944171.1| recombination protein F [Lactobacillus fermentum ATCC 14931]
 gi|260662541|ref|ZP_05863436.1| DNA replication and repair protein RecF [Lactobacillus fermentum
           28-3-CHN]
 gi|227087493|gb|EEI22805.1| recombination protein F [Lactobacillus fermentum ATCC 14931]
 gi|260553232|gb|EEX26175.1| DNA replication and repair protein RecF [Lactobacillus fermentum
           28-3-CHN]
 gi|299782688|gb|ADJ40686.1| DNA replication and repair protein recF [Lactobacillus fermentum
           CECT 5716]
          Length = 373

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 158/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +S +RNY  L + F     + +G+N  GKTN+LEAI  L+  +  R A   ++
Sbjct: 1   MILQELQLSHYRNYEELAVTFAPGINVLIGENAQGKTNLLEAIYLLAFTKSHRTAKDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       ARV G+   A   + LE +   S + +++N +  + +     +L +  
Sbjct: 61  IGWHQK-----LARVSGVVERASGRLPLEVQISTSGKRVKVNHLFQKRLSTYVGNLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G  + RR+F+D     +  ++   +  F + +  RN  L +       D 
Sbjct: 116 FAPEDLALVKGAPVNRRQFMDMEFGQMSSKYLYNVSRFNQQLAQRNAYLRQFKYGQQSDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
                I  Q+A +G ++ +AR +++  L     E     +    +LSL      + D   
Sbjct: 176 ILLGVITDQLASVGGEVVVARQQLVKRLGKWAAELHHHISKQKEELSLQYVSQVEVDDQT 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +      +  +   +  + +     +LIGP R D+      + +    GS G+Q+   + 
Sbjct: 236 TEEEAVAQLRRLYSENEEREIEHGTSLIGPQRDDIHFIVNGQNV-QRFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+   TG  P+LLLD++ + LD+D++  L   + D   Q F+T T  S     
Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDDDRQTHLLTAIQDK-VQTFITTTSLSGVARQ 353

Query: 358 LNETAKFMRISNH 370
           L        I + 
Sbjct: 354 LIHHPTIFTIQSG 366


>gi|291539809|emb|CBL12920.1| recF protein [Roseburia intestinalis XB6B4]
          Length = 368

 Score =  321 bits (824), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 164/373 (43%), Gaps = 19/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + ++ FRNY +L++ FD    I  GDN  GKTNILEA       +  + +   ++
Sbjct: 1   MIIQSIELNNFRNYENLQISFDEGTNILFGDNAQGKTNILEAAYLSGTTKSHKGSKDKEM 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G + +   T     G +   D+ +K         + + +N + ++   EL   L I 
Sbjct: 61  IRFGTNEAHLRTMVLKNGKQYQIDMHLKHNRS-----KGIAVNKIPMKKASELFGILNIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERR FLD  +  +D  +   + ++ +++  RN+LL +  +     
Sbjct: 116 FFSPEDLNIIKNGPSERRHFLDAELCQLDKIYLYDLSNYNKILNQRNKLLKDMVYRPELS 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+A+ G KI   R + +  L+ ++ E   + +    +L L+       D   
Sbjct: 176 DTLPVWDMQLADTGKKIIRRREKFVKELNEIVHEIHYRISGGREELFLSYEPSVSAD--- 232

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                   ++L   +  D    +T +GPHR DL+       I    GS G+Q+   + + 
Sbjct: 233 -----LLEQELERVKPRDLKQCQTSVGPHRDDLLFSIAGVDIR-KFGSQGQQRTSALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+  +    P+LLLD++ + LD +++N L   + D  + I  TG D+ + +   E
Sbjct: 287 LSEIELVRKSIHDTPVLLLDDVLSELDSNRQNYLLNSICDTQTIITCTGLDEFIRNRF-E 345

Query: 361 TAKFMRISNHQAL 373
             K   + + Q  
Sbjct: 346 INKVFEVISGQVF 358


>gi|254520693|ref|ZP_05132749.1| recombination protein F [Clostridium sp. 7_2_43FAA]
 gi|226914442|gb|EEH99643.1| recombination protein F [Clostridium sp. 7_2_43FAA]
          Length = 361

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 170/371 (45%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  +RNY SL +       +F+GDN  GKTNILEAI + +  +  R +   ++
Sbjct: 1   MYIKRLQMLNYRNYKSLNITLGKNVNVFMGDNAQGKTNILEAIYYCAFAKSHRTSKDREL 60

Query: 65  TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               S S + S     + ++   DI+I          + ++IN + +  + EL  +  + 
Sbjct: 61  INWNSDSAYVSLLVGKDRLDKNIDINI-----LKDGKKAIKINKIKVSKIGELFGNFNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   +I       RR+F+D  +  ++ ++   ++ + +++  RN +L     DS   
Sbjct: 116 MFSPEDLKIIKDSPGVRRKFIDMELCQLNSKYYYNLVQYNKVLNERNVVLKNRKLDSEIL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+A  G  I I R++ IN L+    +  +  +     +        K       +
Sbjct: 176 DIYDIQLANFGYHIIIERLKYINKLNFYGNDIHKDISSGKENVEFKYISTIK---DLEDI 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +  + + L   RK D     T IGPHR D IV   D   T + GS G+Q+  ++ I  + 
Sbjct: 233 ENSFYELLRRNRKKDIEKGTTSIGPHRDDFIVLIND-VDTKSFGSQGQQRSAVLTIKFSS 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362
            ++I   T   P+LLLD++ + LD +++  +   + +I  Q  +T T  + + + L+ ++
Sbjct: 292 LKIIKEMTSEYPVLLLDDVLSELDFNRKRYILSTIGEI--QTIITCTGIEDLTNYLDNSS 349

Query: 363 KFMRISNHQAL 373
           +  ++   + L
Sbjct: 350 RVFKVKEGEIL 360


>gi|240849791|ref|YP_002971179.1| DNA replication and repair protein RecF [Bartonella grahamii
           as4aup]
 gi|240266914|gb|ACS50502.1| DNA replication and repair protein RecF [Bartonella grahamii
           as4aup]
          Length = 377

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 170/376 (45%), Positives = 226/376 (60%), Gaps = 6/376 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +++ ++ L +  +RNY    + F  QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y
Sbjct: 5   VHKVAVRQLKLLRYRNYPFFNIHFSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAY 64

Query: 62  ADV-TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +DV    G    F  FAR+E  + G   I   LE  D+   R + IN V     D L  +
Sbjct: 65  SDVSFVDGGGGGFVVFARLECALYGEVKIGTALEVSDN--SRKVHINGVN-ESGDCLTDY 121

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             IS L PSMD +F G S+ERR FLDRMV AIDP HRRR+ D++R MR RNRL  +G  D
Sbjct: 122 CHISVLTPSMDGLFIGPSLERRSFLDRMVLAIDPLHRRRIADYDRAMRARNRLFLDGNED 181

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238
            +W  ++E QMAEL   I+ ARV++I  L+ +  +   +  FP   L + GFL+    + 
Sbjct: 182 CAWFDALEKQMAELATAISAARVDVIRLLNDMFTQMPSQIPFPRAFLQIDGFLETALSEI 241

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   ++E++  +L   R MD  + RTL GPHR+DL V Y DK I     STGEQK +L G
Sbjct: 242 SAIEVEEKFCDRLRHNRAMDRAAGRTLEGPHRADLQVFYADKNIAATSCSTGEQKALLTG 301

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + L HARL    +  APILLLDE++AHLD  +R ALF I+ D+  Q FMTGTD+ +FD L
Sbjct: 302 LVLCHARLTGMMSEKAPILLLDEMAAHLDSHRRAALFDILDDLAVQTFMTGTDRLLFDDL 361

Query: 359 NETAKFMRISNHQALC 374
              A+F  I +   L 
Sbjct: 362 KGRAEFFEIKDGALLS 377


>gi|303240060|ref|ZP_07326581.1| DNA replication and repair protein RecF [Acetivibrio cellulolyticus
           CD2]
 gi|302592329|gb|EFL62056.1| DNA replication and repair protein RecF [Acetivibrio cellulolyticus
           CD2]
          Length = 372

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 177/375 (47%), Gaps = 13/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRNY    + F   + I  G+N  GKTNI+EAI   + GR  R +   ++
Sbjct: 1   MYIDSLQLRNFRNYKENVIDFSKNYNIIYGENAQGKTNIVEAIFLCASGRSHRTSKDIEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             I S S+     +++  +     +I++    ++  + ++IN++ ++ +  L  +L    
Sbjct: 61  VNINSNSYDI---KLDATKNQEKTNIEISYEREKK-KVIKINEIPLKKMGNLMGNLLAVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
             P    + +    +RRRF+D  +  I P +   +  + +++  RN LL E   +     
Sbjct: 117 FSPEDLSVINEGPSQRRRFIDITLSQIKPSYFYDLQLYNKILLQRNSLLKELQNNRGLID 176

Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQS 239
                + ++A++G +I  AR E IN L+           +N  +I+++ +  ++    + 
Sbjct: 177 TLDIWDEKIADIGSRIIKARHEFINRLNKAAKYNHSILSDNNENIEINYSSSVETDNYED 236

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +K          R ++     TL GPHR D  +   +  +  + GS G+++ V++ I
Sbjct: 237 IDKIKANILMDFKRYRYIELKRNTTLKGPHRDDYEIFINNLDVK-SFGSQGQKRTVILSI 295

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L+  ++I   TG  P+LLLD++ + LD  +R  LF  +  I  Q F+T T+K +FD  +
Sbjct: 296 KLSELQIIKEETGEYPVLLLDDVMSELDYKRREILFDNINHI--QTFITCTEKDIFDKKD 353

Query: 360 -ETAKFMRISNHQAL 373
            +   F+ + N   +
Sbjct: 354 FKDLLFVNVKNGNTI 368


>gi|332638149|ref|ZP_08417012.1| recombination protein F [Weissella cibaria KACC 11862]
          Length = 381

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 152/376 (40%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L ++ FRNY  L + F     +F+G N  GKTN+LEAI  L+  R  R  S  ++
Sbjct: 1   MELLELKLNNFRNYQDLAVTFSPGVNVFLGPNAQGKTNLLEAIYVLALARSHRTTSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A V G+       + L        +  ++N +    +      L +  
Sbjct: 61  IGWDGKE-----AMVSGVVRRQYGKVPLSLAFTSKGKKARMNHLDQAKLGTYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR F+DR    + P++      ++ +++ RN+ L +       D 
Sbjct: 116 FAPEDLALVKGAPTIRRNFIDREFSQMSPKYLYIANQYKGVLKQRNQYLKQLQSKQAKDM 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238
            +   +  Q+     ++ + R+++I  L                 ++++    L+ +   
Sbjct: 176 LYLEVLTDQLTSFASELIVRRIQLIKKLGEAAAPIHADITQGGETLRIAYVSQLNEEELG 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +KE   K+    +  + M   TL+GPHR DL  D     +    GS G+Q+   + 
Sbjct: 236 DEQVIKEAMTKRFERLQSREVMMGTTLLGPHRDDLRFDVNGHDV-ATFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+   TG  PILLLD++ + LD +++  L   + +   Q F+T    S     
Sbjct: 295 VKLAEIDLMKQETGEYPILLLDDVLSELDTNRQTHLLTAMQNK-VQTFITTPSLSDVARQ 353

Query: 358 LNETAKFMRISNHQAL 373
           L    K   +   Q +
Sbjct: 354 LINEPKVFNVRAGQLV 369


>gi|170738370|ref|YP_001767025.1| DNA replication and repair protein RecF [Methylobacterium sp. 4-46]
 gi|168192644|gb|ACA14591.1| DNA replication and repair protein RecF [Methylobacterium sp. 4-46]
          Length = 382

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 200/372 (53%), Gaps = 5/372 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L   +FRN+ASL L         VG+NG GKTNILEA+S  +PGRG RRA +A + 
Sbjct: 8   RVTRLIARDFRNHASLDLGVGRPFVALVGENGAGKTNILEALSLFAPGRGLRRADFAAMA 67

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLRI 122
           R G P  F+    VEG  G   +    E    R++R  R  +I+           + LR+
Sbjct: 68  REGGPGGFAVSLSVEGPHGEHRVGTAWEPPQGREERGGRQCRIDGASAPSPTAFAEQLRV 127

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P +D +F G + +RRRFLDR+V A+D  H  R+   ER +R RNRLL E   D  W
Sbjct: 128 VWLTPDLDALFRGPAGDRRRFLDRLVLAVDAGHGSRVSALERALRSRNRLLEERPEDGPW 187

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLDGKFDQ-SF 240
             +IE ++AEL + + +AR E +  L  LI+        FP   + L G +D        
Sbjct: 188 LDAIEREVAELAIAVALARRETVERLDRLILATRDAASPFPWAGVRLEGDIDDLVAVWPA 247

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              ++ +   L   R  D  + RTL GP  SDL+V +  K +     STGEQK +L+G+ 
Sbjct: 248 VDAEDRFRATLRQNRFRDRAAGRTLAGPQASDLVVRHGPKDVPAGTASTGEQKALLIGLV 307

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL++  +G AP++LLDE++AHLD  +R  LF  +  +  Q++MTG D ++F  L  
Sbjct: 308 LAHARLVAGMSGLAPLVLLDEVAAHLDPRRRAGLFDALEALPGQVWMTGADPALFAELGS 367

Query: 361 TAKFMRISNHQA 372
               + ++  Q 
Sbjct: 368 RGDVVAVAEGQV 379


>gi|229829521|ref|ZP_04455590.1| hypothetical protein GCWU000342_01613 [Shuttleworthia satelles DSM
           14600]
 gi|229791952|gb|EEP28066.1| hypothetical protein GCWU000342_01613 [Shuttleworthia satelles DSM
           14600]
          Length = 365

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 100/373 (26%), Positives = 165/373 (44%), Gaps = 19/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +S +RNY SL + FD    I  GDN  GKTNILE+I      R  R A   ++
Sbjct: 1   MYIQSIELSNYRNYRSLEMEFDRGTNILFGDNAQGKTNILESIYLSGTSRSHRTARDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123
            R G        A +       D+S  ++    ++  + + IN V ++   +L   L I 
Sbjct: 61  IRFGQEE-----AHIRTNVRKNDLSYCIDIHIRQAKSKGIAINGVPVKKASDLFGLLGII 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDS 180
           +  P    I     +ERR F++  +  ID  +   + ++ + +  RN LL    +     
Sbjct: 116 FFSPEDLNIVKNGPVERRHFINAELSQIDRIYLSDLSNYNKALNQRNSLLKGILDHPELR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+   G ++   R E I  L  ++ E  +K +     L L    +   D +F
Sbjct: 176 ETLDVWDGQLVSYGKRLIARRREFIADLIPIVREIHRKLSGGIEDLLLAY--EPNIDDTF 233

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                 +  +LF  R  D     T +GPHR DL +      I    GS G+Q+   + + 
Sbjct: 234 ------FEDELFRARDRDMRMGTTTVGPHRDDLKLSIASVDIR-RFGSQGQQRTCALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA  +++    G  PILLLD++ + LD +++N L   + DI + I  TG D+ V +  + 
Sbjct: 287 LAEIQMMEAKRGEKPILLLDDVLSELDSNRQNYLLESINDIQTIISCTGLDEFVKNKFSV 346

Query: 361 TAKFMRISNHQAL 373
             +   ISN QA 
Sbjct: 347 H-RVYEISNGQAF 358


>gi|332980608|ref|YP_004462049.1| DNA replication and repair protein RecF [Mahella australiensis 50-1
           BON]
 gi|332698286|gb|AEE95227.1| DNA replication and repair protein RecF [Mahella australiensis 50-1
           BON]
          Length = 363

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 166/371 (44%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L ++++RNY ++++ F+    +F GDNG GKTNILEAI   S GR  R +   D+
Sbjct: 1   MYIKELTLTDYRNYNNVKINFNIGINVFWGDNGAGKTNILEAIYLTSAGRSHRTSRDKDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+   F    +V   +G  D+++ +        + +++N   I  + +L   +    
Sbjct: 61  IRQGAQDAF-INIKVIRKDGEIDVNMMI---PQNGSKRIKVNGKYINRIAQLMGIVTAVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P   ++      ERRRF+D  +  I P +   +  + +++  RN+ L +   G+    
Sbjct: 117 FSPEDLKLVKEGPEERRRFIDIFISQIKPDYLYNLQKYYKILENRNKTLKDIKYGHASRD 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
             +    Q+A +G ++   R+  ++ + + + +  +        L L             
Sbjct: 177 LLAVWNEQLAYIGTELLEQRLYFVDKICAEVSDIHEYITDHKENLKLRYKSTLSLS---G 233

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +K+ +   L      D     T IGPHR D+I+   D  +   +GS G+Q+   + + L
Sbjct: 234 NIKQNFISALNQRFDADINMGTTTIGPHRDDMIILVNDMDMRY-YGSQGQQRTAALSLKL 292

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
               +  +  G +P+LLLD++ + LD  ++N L   +     Q  MT   KS +    + 
Sbjct: 293 GQLEVTEDLIGESPVLLLDDVMSELDIMRQNMLMSYMKRY--QTMMTCIRKSDYLEQYDK 350

Query: 362 AKFMRISNHQA 372
             F  + N Q 
Sbjct: 351 KTFFYVENGQV 361


>gi|302669378|ref|YP_003829338.1| DNA replication and repair protein RecF [Butyrivibrio
           proteoclasticus B316]
 gi|302393851|gb|ADL32756.1| DNA replication and repair protein RecF [Butyrivibrio
           proteoclasticus B316]
          Length = 372

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 170/384 (44%), Gaps = 28/384 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +++FRNY ++++ F +   I  GDN  GKTNILEAI   +  +  + +   ++
Sbjct: 1   MIIKSLELADFRNYENVKIDFSSGTNILYGDNAQGKTNILEAIFVSATTKSHKGSKDKEI 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   +   T    +  E   D+ ++         + + I+   I+   +L   L + 
Sbjct: 61  IRFGKDEAHIRTILEKDNAEYRVDMHLR-----SSKTKGIAIDGQKIKRASDLIGMLNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181
           +  P    I      ERRRF+D  +  +D  +   +  + +L+  RN++L + Y      
Sbjct: 116 FFSPEDLSIIKNGPSERRRFMDMELCQLDQIYLNSLSKYNKLVVERNKVLKDLYEHPENS 175

Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ E G  I   R + I  L+ +I    +K       LS+    +   D   
Sbjct: 176 VLLDVQDKQLCEYGSVIIKTREKFIRDLNEIIRPIHEKLTGNKEFLSVYYEPNVSAD--- 232

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV----------DYCDKAITIAHGSTG 290
                E+ KKL   R+ D+ +++T +GPH+ D             +Y +      +GS G
Sbjct: 233 -----EFEKKLRAARQKDTYAKQTTVGPHKDDFSFVVQKKKADCDEYGEGIDIRKYGSQG 287

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+   + + L+   ++       P+LLLD++ + LD +++N L   + DI + +  TG 
Sbjct: 288 QQRTASLSLKLSEIEIVKRAKKENPVLLLDDVLSELDSNRQNYLLNTIGDIQTIVTCTGL 347

Query: 351 DKSVFDSLNETAKFMRISNHQALC 374
           D+ V +   E  K  ++++     
Sbjct: 348 DEFVNNRF-EIDKLFKVTDGTISS 370


>gi|148251630|ref|YP_001236215.1| recombination protein F [Bradyrhizobium sp. BTAi1]
 gi|146403803|gb|ABQ32309.1| DNA replication and repair protein RecF [Bradyrhizobium sp. BTAi1]
          Length = 378

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 143/370 (38%), Positives = 208/370 (56%), Gaps = 3/370 (0%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L ++ FR+Y +  +   A     VG NG GKTN LEAISF +PGRG RRA+  DV 
Sbjct: 5   RINRLALTHFRSYRAASVSVQADMVALVGANGAGKTNCLEAISFFAPGRGLRRATLEDVA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  ++  A +EG  GLA     +E    D   VR  +I+   +        H+R+ 
Sbjct: 65  DNQGDGSWAISAEIEGALGLATFGTGIEPPRNDAAIVRRCRIDREPVGSAAAFGDHIRMV 124

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P+MD +F G + ERRRF DR+V AID  H  R+   ER +R RNRLL    FD  WC
Sbjct: 125 WLTPAMDGLFMGAASERRRFFDRLVLAIDSEHSSRVSALERSLRSRNRLLEVRNFDDHWC 184

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242
            +IE + AEL V +  +R +    L++++ +  Q   FP  +++L G+++     +   A
Sbjct: 185 DAIERETAELAVAVAASRGQTAVKLAAMLRQRGQASAFPSAEIALAGWMENALLTEPALA 244

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++ Y   L D R  D+ + RTL GPH +DL V Y  K++     STGEQK +L+G+ LA
Sbjct: 245 VEDRYRALLRDNRARDAAAGRTLDGPHLTDLHVIYAPKSMPARDASTGEQKALLIGLILA 304

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA L++ TTG  P+LLLDEI AHLD  +R ALF  +  +G+Q+++TG D + F  L E  
Sbjct: 305 HATLVAETTGIVPMLLLDEIVAHLDPGRRTALFAELGTLGAQVWLTGADPAAFAELRELG 364

Query: 363 KFMRISNHQA 372
           +   +   + 
Sbjct: 365 EIFDVEGGRI 374


>gi|118578452|ref|YP_899702.1| recombination protein F [Pelobacter propionicus DSM 2379]
 gi|118501162|gb|ABK97644.1| DNA replication and repair protein RecF [Pelobacter propionicus DSM
           2379]
          Length = 370

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 93/367 (25%), Positives = 166/367 (45%), Gaps = 9/367 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I++FRN  S+R        +  G NG GKTN+LEAI  L   R FR A   D 
Sbjct: 1   MRLTRLSIADFRNIGSVRFTPGRCFNLIHGRNGQGKTNLLEAIYLLGSPRSFRNARLPDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G        A + G    A I  ++    + + R ++++   I+   +L   + +  
Sbjct: 61  IRHGEQR-----AHLHGEVESAGIHGRIGLSIENAGRRVELDGKGIQRASDLYGRINVVV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +       RRR+LDR ++  D  +      F+R+++ RN+LL     D S   
Sbjct: 116 FSPDDTAMVRYGPETRRRYLDRTIYMCDIGYLHCWHAFQRILKQRNQLLKNS--DKSGLD 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +   Q+AE G +I + R   +  L+ ++  +    +      S+    +G   Q    ++
Sbjct: 174 TWTEQLAETGAEIIVRRRRFVERLNGMLQRHYGNISAGEETASVAYEPEGINSQEQQRVR 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           EE  +     ++ D     T  GPHR DL      + +  + GSTG+QK  ++ + +A  
Sbjct: 234 EELLELFQRSQQSDIRQGTTTAGPHRDDLKFRLDGRPLK-SFGSTGQQKSFVLALKMAEI 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAK 363
             +++  G  P+LLLD++S+ LD+ +   L   + ++  Q+FMT T +S V         
Sbjct: 293 DNLTDIFGEPPLLLLDDVSSELDDARSGNLLHFLLNMDIQVFMTTTQRSPVLLGAAAHCA 352

Query: 364 FMRISNH 370
              + + 
Sbjct: 353 VFHVEHG 359


>gi|164686443|ref|ZP_02210471.1| hypothetical protein CLOBAR_00008 [Clostridium bartlettii DSM
           16795]
 gi|164604454|gb|EDQ97919.1| hypothetical protein CLOBAR_00008 [Clostridium bartlettii DSM
           16795]
          Length = 371

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 173/374 (46%), Gaps = 11/374 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  FRNY +L L F     + VG NG GKTNI+EAI  LS G+ FR     ++
Sbjct: 1   MRLNNLQLINFRNYDNLHLNFKRNINLLVGKNGQGKTNIVEAIYMLSFGKSFRTNKDKEI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + GS + +     + G          +E     + + +++N + I  + EL  +L +  
Sbjct: 61  IKFGSENLY-----IGGNYLKNSSKGLIEVAIGNNKKGIKVNKIHIHKIQELLGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   ++      ERR F+D+ +  I P++   ++++ +++  RN+ L     D +  S
Sbjct: 116 FSPEDLKLVKDGPRERRSFIDKEISQIMPKYYNYLVNYNKILIQRNKTLKNRIVDENLLS 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCA 242
             +  +A  G  I + R + I  ++ +  E  +K   N   + ++    ++   + +   
Sbjct: 176 VYDESLANYGAYIYVLRRDFIKKIAKISNEMHKKLTGNNEELLITYKNQINLTDEDTVKD 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            K++   KL   R+ D  +R T  G H+ DL +   D  + + +GS G+Q+   + + L+
Sbjct: 236 AKDKLLSKLESNRQRDIETRMTKYGIHKDDLNIFINDLDVKL-YGSQGQQRTASISLKLS 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361
              LI       P+L+LD++ + LDE ++  L   + D   Q+F+T  + +     +E+ 
Sbjct: 295 EIELIKQEMNDNPVLILDDVFSELDETRQKLLVENLGD--VQMFITSAELAHKRIFDESE 352

Query: 362 AKFMRISNHQALCI 375
                I   +   I
Sbjct: 353 TAIFYIDKGKVTNI 366


>gi|153952674|ref|YP_001393439.1| recombination protein F [Clostridium kluyveri DSM 555]
 gi|189039621|sp|A5N460|RECF_CLOK5 RecName: Full=DNA replication and repair protein recF
 gi|146345555|gb|EDK32091.1| RecF [Clostridium kluyveri DSM 555]
          Length = 364

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 160/372 (43%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK+L +  FRNY  L + FD    IFVGDN  GKTNILE++ + S G+  R +   ++
Sbjct: 1   MYIKYLKLINFRNYKELDIEFDKNINIFVGDNAQGKTNILESMYYCSIGKSPRTSKDKEL 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               +  S+       +      +I I  E       + + IN + +  + EL   L + 
Sbjct: 61  INWDNKESYIKVHILKKLFNKKIEIKIFKE-----GKKGININSIKVSKLSELMGVLNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--S 181
              P   +I     + RR+FLD  +     ++   ++ + +++  RN +L +    +   
Sbjct: 116 MFSPEDLKIIKESPVYRRKFLDIELCKFSKKYYYGLVQYNKVLTARNIILKKWNKGNYID 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + Q+A+ G  I   R   +  LS                +            +F 
Sbjct: 176 ILQVYDKQLAKYGEVIIKLRNNYLKKLSEKGKVIHSDITSGIENIEFKYMTCLT---NFD 232

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            ++++  K L   RK D     TL GPHR D IV+     +    GS G+Q+  ++ +  
Sbjct: 233 NIEDDLFKILEFNRKKDIYKGITLYGPHRDDFIVNINGVNVR-NFGSQGQQRTSILTMKF 291

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNE 360
           A   +I    G  P+LLLD++ + LD++++  +   + DI  Q F+T T    +  S+ +
Sbjct: 292 ASLEIIKEIIGEYPVLLLDDVLSELDKNRQKYILSSIKDI--QTFITCTGIDDIKKSIID 349

Query: 361 TAKFMRISNHQA 372
            A+   +   + 
Sbjct: 350 EAQLFIVKKGKV 361


>gi|255659818|ref|ZP_05405227.1| DNA replication and repair protein RecF [Mitsuokella multacida DSM
           20544]
 gi|260847893|gb|EEX67900.1| DNA replication and repair protein RecF [Mitsuokella multacida DSM
           20544]
          Length = 365

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 86/371 (23%), Positives = 157/371 (42%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RNY+ L L       IF+G N  GKTN++EA+ + S G   R     ++
Sbjct: 1   MYVRSLKLRNYRNYSELELALQPGINIFLGPNAQGKTNVVEAVYYASLGHSHRTHLDTEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +          +    +  +  +         R + +N   IR + EL   +    
Sbjct: 61  IRWDAGEGC-IILDFDRRGVMNHLEFQFSRA---KRRRILLNGHPIR-LKELIGSINTVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    +  G    RRRFLD  +    P +   +++F R++  RN LL        D S
Sbjct: 116 FSPEDLFLIKGAPAGRRRFLDGEISQASPAYYHELVEFNRIISQRNSLLKRIRERRADKS 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
             +  + Q+     KI   R+E +  L+ L     ++ +     L+++  + G  D +  
Sbjct: 176 MLALWDEQLIASAEKIIRKRIEAVRKLNMLANLMQRRISSDQENLTVSYEVHGGEDMT-K 234

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
                Y + L   ++ D +   T  GPH  DL++      +    GS G+Q+  ++ + L
Sbjct: 235 GFASWYNEMLRKSQETDILRGSTSYGPHHDDLVLTVNGINLR-TFGSQGQQRTGVLSLKL 293

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           A    + + TG  PILLLD++ + LD  +R  L + +     Q  +T TD + F +    
Sbjct: 294 AELEFLRSETGEYPILLLDDVMSELDVKRRQQLLQFIRRERIQTLITATDAAYFPA-EGM 352

Query: 362 AKFMRISNHQA 372
            ++  + + Q 
Sbjct: 353 GRYYHVQSGQI 363


>gi|219853347|ref|YP_002470469.1| hypothetical protein CKR_0004 [Clostridium kluyveri NBRC 12016]
 gi|219567071|dbj|BAH05055.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 367

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 160/372 (43%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK+L +  FRNY  L + FD    IFVGDN  GKTNILE++ + S G+  R +   ++
Sbjct: 4   MYIKYLKLINFRNYKELDIEFDKNINIFVGDNAQGKTNILESMYYCSIGKSPRTSKDKEL 63

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               +  S+       +      +I I  E       + + IN + +  + EL   L + 
Sbjct: 64  INWDNKESYIKVHILKKLFNKKIEIKIFKE-----GKKGININSIKVSKLSELMGVLNVV 118

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--S 181
              P   +I     + RR+FLD  +     ++   ++ + +++  RN +L +    +   
Sbjct: 119 MFSPEDLKIIKESPVYRRKFLDIELCKFSKKYYYGLVQYNKVLTARNIILKKWNKGNYID 178

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + Q+A+ G  I   R   +  LS                +            +F 
Sbjct: 179 ILQVYDKQLAKYGEVIIKLRNNYLKKLSEKGKVIHSDITSGIENIEFKYMTCLT---NFD 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            ++++  K L   RK D     TL GPHR D IV+     +    GS G+Q+  ++ +  
Sbjct: 236 NIEDDLFKILEFNRKKDIYKGITLYGPHRDDFIVNINGVNVR-NFGSQGQQRTSILTMKF 294

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNE 360
           A   +I    G  P+LLLD++ + LD++++  +   + DI  Q F+T T    +  S+ +
Sbjct: 295 ASLEIIKEIIGEYPVLLLDDVLSELDKNRQKYILSSIKDI--QTFITCTGIDDIKKSIID 352

Query: 361 TAKFMRISNHQA 372
            A+   +   + 
Sbjct: 353 EAQLFIVKKGKV 364


>gi|306820917|ref|ZP_07454537.1| recombination protein F [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551031|gb|EFM39002.1| recombination protein F [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 356

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 91/365 (24%), Positives = 168/365 (46%), Gaps = 15/365 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  +N+  +RNY +L L F     + +G NG GKTNI+EA+ FLS  + FR     +V
Sbjct: 1   MQINNINLKNYRNYENLSLDFSENINMIIGQNGQGKTNIVEAVHFLSFAKSFRTNRDKEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  S +   + ++ ++    I I++   D ++V    IN   I  + +L   + +  
Sbjct: 61  INFGKDSAY-IKSSIQNIDDSYTIDIRISNLDKKAVN---INKNPISKISDLMGIVNVVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   +I S     RR F+++ +  I P +   ++D+ + +  +N LL     D+    
Sbjct: 117 FSPEDTKIVSDTPSFRRGFMNKEISQIKPLYYNILLDYNQTLENKNSLLKTQNPDTIMLD 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q++    KI   R + I  +S +  E   K +     L +    + K+++     K
Sbjct: 177 IYDEQLSAYMEKIIAYRKDFIKQISVIANETHGKISSQKENLIINYSPNIKYEK-----K 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  K L   R  D +   +  G H+ D+ +   D  I    GS G++K   + + L+  
Sbjct: 232 EDIFKLLSSSRADDMIRGTSSKGIHKDDIEIMIGDIDIR-KFGSQGQKKTATIALKLSEI 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            LI N     P+++LD+I + LD ++R  L   +  +  Q F+T T+K   D   +  K+
Sbjct: 291 ELIYNMKKEYPVVILDDIFSELDINRRKMLIEKL--LNIQTFITTTEKIDID---KEIKY 345

Query: 365 MRISN 369
             + +
Sbjct: 346 FEVKD 350


>gi|260437692|ref|ZP_05791508.1| DNA replication and repair protein RecF [Butyrivibrio crossotus DSM
           2876]
 gi|292809918|gb|EFF69123.1| DNA replication and repair protein RecF [Butyrivibrio crossotus DSM
           2876]
          Length = 361

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 163/372 (43%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK +++  FRNY + ++ FD    I  GDN  GKTNILEAI      +  + +  +++
Sbjct: 1   MIIKSIDLQNFRNYETEKIEFDENTNILYGDNAQGKTNILEAIFLSGTSKSHKGSKDSEI 60

Query: 65  TRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  S   T    + ++   DI I+         + + +N V I+   EL   + I 
Sbjct: 61  INFLKDESHIKTVISKKEIDYRIDIHIR-----KNKSKGIAVNGVPIKKSSELYGIVNIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180
           +  P    I       RRRF+D  +  +D  +   +I++ + +  RNRLL + YF     
Sbjct: 116 FFSPEDLNIIKAGPFARRRFMDMEMCQLDKIYVNSLINYNKAIDQRNRLLKDIYFSPYLE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 +  + + G +I   R   IN L+ +I +     +     + +            
Sbjct: 176 DTMDIWDENILKYGSEIIRKRESFINELNEIIGKIHFTLSGGRENIVIKY--------EP 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
           C  +EE+   L   R  D   + T  GPHR D+ +   D      +GS G+Q+   + + 
Sbjct: 228 CVKEEEFESVLKSTRDRDKKQKSTCSGPHRDDI-IFLIDNVDIRKYGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   ++    G  PILLLD++ + LD  ++N L   + +I + +  TG D+ + +  N 
Sbjct: 287 LAEIEIVKKQIGDTPILLLDDVLSELDSSRQNYLLNSIHNIQTIMTCTGLDEFINNRFNV 346

Query: 361 TAKFMRISNHQA 372
             +  +++N + 
Sbjct: 347 N-RIFKVTNGKV 357


>gi|118587496|ref|ZP_01544921.1| DNA repair protein RecF [Oenococcus oeni ATCC BAA-1163]
 gi|118432146|gb|EAV38887.1| DNA repair protein RecF [Oenococcus oeni ATCC BAA-1163]
          Length = 373

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 155/378 (41%), Gaps = 16/378 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRNY SL++ F     + +GDN  GKTN+LEAI  LS  R  R  +  D+
Sbjct: 1   MFLNSLKLKDFRNYKSLQVDFSNSINVLIGDNAQGKTNLLEAIYILSMARSHRDNNDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S      F+ + G          LE R  ++ + + +N +    + +   +L    
Sbjct: 61  INWSSD-----FSDITGEVQSKMGKFPLEVRITKTGKKVFVNHLTENRLSDYIGNLHTVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------Y 177
             P    +  G    RR+F+D     +   +   ++ +  +++ RN  L           
Sbjct: 116 FAPEDLDLVKGSPGVRRKFIDSEFGQMSANYLFNLLQYRSVLKNRNAYLKNIKWIGNNPK 175

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-PHIKLSLTGFLDGKF 236
            D  +   +  Q+ + G +I   R  ++  L     +  +  +    + +    F     
Sbjct: 176 IDEDYLKVLNDQLIDFGSEIIFQRFVLVKELEKYSYQIHKAISRNEKLTIKYASFSGIDD 235

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
             +   + + +  +L   +  +   + T +GPH  DL      K +  +  S G+Q+   
Sbjct: 236 QSTKEEISKIFNNQLLKNKTRELFLKSTSVGPHHDDLKFSINGKEVG-SFASQGQQRTTA 294

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   ++   TG  PILLLD++ + LD D++  L   + D   Q F+T T  S  +
Sbjct: 295 LSVRLAEIEMMKYETGEYPILLLDDVLSELDGDRQTQLLNFIQDK-VQTFLTTTSLSDVE 353

Query: 357 -SLNETAKFMRISNHQAL 373
             L +  K  ++     +
Sbjct: 354 RDLIKDPKIYQVKGGTLV 371


>gi|319405030|emb|CBI78640.1| DNA replication and repair protein [Bartonella sp. AR 15-3]
          Length = 370

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 166/369 (44%), Positives = 224/369 (60%), Gaps = 6/369 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RNY SL L    QH +  G NGVGKTN+LEA+SFLSPGRG RRA Y+D+
Sbjct: 1   MAVRQLKLENYRNYCSLALHLLGQHVVLTGRNGVGKTNLLEALSFLSPGRGLRRAPYSDI 60

Query: 65  -TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
               GS + F  FAR++  + G A+I   LE  D    R + IN V     D L  +  I
Sbjct: 61  SCSEGSGTGFVVFARLQCALYGEANIGTALEANDG--GRKVHINGVNEAS-DCLMDYCHI 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           S L PSMD +F+G +++RRRFLDRMV +ID  H RR+ D++R+MR RNRL  +   D +W
Sbjct: 118 SILTPSMDGLFTGPALDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDRNDDRAW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFC 241
             ++E QMAEL   I  ARV++I  L+ +  +      FP   L + GFL+    + S  
Sbjct: 178 LDALELQMAELATAIAAARVDIIQLLNDMFAQVSAWIPFPRAFLQVDGFLEKALSETSAI 237

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            ++E++  +L + R +D  + R L GPHR+DL V Y DK +     STGEQK +L G+ L
Sbjct: 238 EVEEQFLYRLRNNRAIDCAAGRALEGPHRTDLQVFYADKNMDATFCSTGEQKALLTGLVL 297

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
            HARL S  +   PILLLDEI+AH D  +R ALF I+ D+G Q FMTGTD  +FDSL   
Sbjct: 298 CHARLTSTISKMTPILLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHILFDSLKGR 357

Query: 362 AKFMRISNH 370
           A+F  I N 
Sbjct: 358 AEFFEIENG 366


>gi|52424542|ref|YP_087679.1| recombination protein F [Mannheimia succiniciproducens MBEL55E]
 gi|81691468|sp|Q65VB6|RECF_MANSM RecName: Full=DNA replication and repair protein recF
 gi|52306594|gb|AAU37094.1| RecF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 360

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 161/369 (43%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN +++ L FD      VG+NG GKT++LEA+ +L  GR F+ +    V
Sbjct: 1   MAIARLIVENFRNISAVDLEFDHGFNFLVGNNGSGKTSLLEALFYLGHGRSFKSSVTTRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P  F+   R+   E   + S+ L+ +       ++IN      + +L   L +  
Sbjct: 61  IRYDQP-HFTLHGRI--RELQHEWSVGLQKQRKDGNTIVKINGEDGNKISDLAHLLPMQI 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F   P          RL++ RN  L + Y D +   
Sbjct: 118 ITPEGLTLLNGGPSYRRAFLDWGLFHHQPNFHSAWSALHRLLKQRNAALNQTY-DYNMLK 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R +   ALS  I E   +   P + + ++     + D       
Sbjct: 177 PWDMELAKLAHQVSQWRADYAEALSPEI-EQTCRLFLPELDIHVSFHQGWEKDT------ 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L +  + D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 230 -DYAQLLTENFERDKAIGYTVSGPQKADFRFKSNGLPVEDVL-SRGQLKLLMCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363
             +        I L+D+ ++ LDE KR  L + + +  SQ+F+T         +  E  +
Sbjct: 288 EHLMAQKNRHCIFLIDDFASELDETKRALLAQRLQNSNSQVFVTAISPEQLKQMQPEKHR 347

Query: 364 FMRISNHQA 372
             ++ N Q 
Sbjct: 348 TFQVVNGQI 356


>gi|163814984|ref|ZP_02206371.1| hypothetical protein COPEUT_01137 [Coprococcus eutactus ATCC 27759]
 gi|158449667|gb|EDP26662.1| hypothetical protein COPEUT_01137 [Coprococcus eutactus ATCC 27759]
          Length = 369

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 91/359 (25%), Positives = 156/359 (43%), Gaps = 20/359 (5%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + I+ + ++ +RNY  L++ F     I  G+N  GKTNILE+I   +  +  R   
Sbjct: 1   MVKDMYIESIELNNYRNYRKLKVEFGKNTNILYGNNAQGKTNILESIYMAATTKSHRGTK 60

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             D+ RIG   S    F R   +    D+ ++         + + I+ + IR   EL   
Sbjct: 61  DRDIIRIGEDESHIRLFLRKRDVSHKIDMHLR-----KSKNKGVAIDGIAIRRATELYGL 115

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           L + +  P    I      ERRRF+D  +  I   + + +  + +++  RN LL + Y++
Sbjct: 116 LNVIFFSPEDLSIIKNGPAERRRFMDLELCQISRLYYQNLASYNKILNQRNNLLKQIYYN 175

Query: 180 SSW---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
            S          Q+ + G KI   R   I+ ++ +I +   +      KL +        
Sbjct: 176 KSLIDTLDVWNIQLVDYGSKIIKERKNFIDMMNDIICDIHSRLTGGREKLEIVY------ 229

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
              +   +  +   L +  + D     T  GPHR D+     +      +GS G+Q+ V 
Sbjct: 230 --EYNVNENNFEDVLREKLETDLKYSSTQAGPHRDDISF-LINGIDARKYGSQGQQRTVA 286

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           + + +A  +L+       PILLLD++ + LD D+RNAL   + DI  Q  +T T    F
Sbjct: 287 LSLKMAEIKLVKKIISDNPILLLDDVMSELDTDRRNALIDEIKDI--QTIITCTGYDEF 343


>gi|319407988|emb|CBI81642.1| DNA replication and repair protein [Bartonella schoenbuchensis R1]
          Length = 390

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 168/375 (44%), Positives = 231/375 (61%), Gaps = 6/375 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++ ++ L ++ +RNY S  +    QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y+
Sbjct: 9   HKVTVRQLKLTHYRNYCSFNIHLSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAYS 68

Query: 63  DVT-RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           D++   G  + F  FAR++  + G  +I   LET D  S R + IN V     D L  + 
Sbjct: 69  DISFSKGVGAAFVVFARLQCALYGEVNIGTTLETSD--SGRKVHINGVH-ESCDCLTDYC 125

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +S L PSMD +F G S++RRRFLDRMV AID  H RR+ D+++ MR RNRL  +G  + 
Sbjct: 126 HVSVLTPSMDGLFMGPSLDRRRFLDRMVLAIDSLHGRRIADYDKAMRARNRLFLDGNENC 185

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQS 239
           +W  ++EAQMAEL   I  ARV++I  L+ +  +      FP   L + GFL+      S
Sbjct: 186 AWFDALEAQMAELATAIAAARVDVIQLLNDMSEQTSSYTPFPRAFLQIDGFLEKALGTTS 245

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              ++E++  +L   R +D  +RRTL GPHR+DL V Y DK I     STGEQK +L G+
Sbjct: 246 AIEVEEQFLDRLRRNRPIDCAARRTLEGPHRTDLQVFYADKNIAATSCSTGEQKALLTGL 305

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L HARL    +   PILLLDE++AHLD  +R ALF I+ D+GSQ FMTGTD+ +FDSL 
Sbjct: 306 VLCHARLTGMMSNMTPILLLDEMAAHLDSRRRAALFDILDDLGSQTFMTGTDRILFDSLK 365

Query: 360 ETAKFMRISNHQALC 374
             A+F  I +   L 
Sbjct: 366 GRAEFFEIEDGALLQ 380


>gi|291536987|emb|CBL10099.1| recF protein [Roseburia intestinalis M50/1]
          Length = 368

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 163/373 (43%), Gaps = 19/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + ++ FRNY +L++ FD    I  GDN  GKTNILEA       +  + +   ++
Sbjct: 1   MIIQSIELNNFRNYENLQISFDEGTNILFGDNAQGKTNILEAAYLSGTTKSHKGSKDKEM 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G + +   T     G +   D+ +K         + + +N + ++   EL   L I 
Sbjct: 61  IRFGTNEAHLRTMVLKNGKQYQIDMHLKHNRS-----KGIAVNKIPMKKASELFGILNIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERR FLD  +  +D  +   + ++ +++  RN+LL +  +     
Sbjct: 116 FFSPEDLNIIKNGPSERRHFLDAELCQLDKIYLSDLSNYNKILNQRNKLLKDMVYRPELS 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ + G KI   R + +  L+ L+ E   + +    +L L+       D   
Sbjct: 176 DTLPVWDMQLIDTGKKIIRRREQFVKELNELVHEIHYRISGGREELFLSYEPSVSAD--- 232

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                   ++L   +  D    +T +GPHR DL+       I    GS G+Q+   + + 
Sbjct: 233 -----LLEQELERVKPRDLKQCQTSVGPHRDDLLFSIAGVDIR-KFGSQGQQRTSALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+  +    P+LLLD++ + LD +++N L   + D  + I  TG D+ + +   E
Sbjct: 287 LSEIELVRKSIHDTPVLLLDDVLSELDSNRQNYLLNSICDTQTIITCTGLDEFIRNRF-E 345

Query: 361 TAKFMRISNHQAL 373
             K   + + Q  
Sbjct: 346 INKVFEVISGQVF 358


>gi|254230347|ref|ZP_04923733.1| Recombinational DNA repair ATPase [Vibrio sp. Ex25]
 gi|262392781|ref|YP_003284635.1| DNA recombination and repair protein RecF [Vibrio sp. Ex25]
 gi|151937139|gb|EDN56011.1| Recombinational DNA repair ATPase [Vibrio sp. Ex25]
 gi|262336375|gb|ACY50170.1| DNA recombination and repair protein RecF [Vibrio sp. Ex25]
          Length = 359

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 154/369 (41%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEA+  L  GR F+ +    V
Sbjct: 1   MPLSRLIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +P   +    F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYQAWGRFKRLNKQRNALLKTANSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R   I  +   + E + +   P  ++ L  +     D       
Sbjct: 177 YWDQEMAGLAENISQWRASYIEQM-KTVAETICQTFLPEFEIQLKYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YHEILEKNFERDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L++  K
Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDNGK 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 LFHVEHGRI 356


>gi|210624033|ref|ZP_03294150.1| hypothetical protein CLOHIR_02102 [Clostridium hiranonis DSM 13275]
 gi|210153240|gb|EEA84246.1| hypothetical protein CLOHIR_02102 [Clostridium hiranonis DSM 13275]
          Length = 368

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 175/371 (47%), Gaps = 12/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  +RNY  L + F+ +  + +G NG GKTNI E+I  L+ G+ FR     ++
Sbjct: 1   MKLKNLQLVNYRNYDKLYIEFNDRINLLLGSNGQGKTNIAESIYLLAFGKSFRTNRDREL 60

Query: 65  TRIGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +  + + +        G  G+ +I+I       ++ + +++N + I  + EL  ++ + 
Sbjct: 61  IKFNTENLYVGGGYEKNGRNGMVEIAI------SKAKKGIKVNKIPIVKLAELLGNINVV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   R+       RR F+DR +  I P +   +  + +++  RN+LL     D +  
Sbjct: 115 IFSPEDLRLVKDGPKIRRSFIDREISQIVPGYYGLLTGYNKILANRNKLLKNMNPDLNLL 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              +  +A+ G KI + R + I  ++ +  +   +       L++      + +    ++
Sbjct: 175 DVYDESLADYGSKIFMFRKKFIERIAEISKDMHARLTDNKEDLNVIYKSQIQINDE-SSV 233

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           K+++   L D RK D   R +  G H+ D+++      + + +GS G+Q+   + + L+ 
Sbjct: 234 KDKFINILKDKRKHDLDMRISGYGIHKDDILIQINGLDVRL-YGSQGQQRTASISLKLSE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362
             LI+   G  P+L+LD++ + LDE ++  L   + D   Q+F+T  +    + L+    
Sbjct: 293 IELINREVGEYPLLILDDVFSELDEKRQKLLVDNLKD--VQMFITTAEYLHKNVLDMNNT 350

Query: 363 KFMRISNHQAL 373
               I N + +
Sbjct: 351 TVFYIDNGKVV 361


>gi|116490130|ref|YP_809653.1| DNA replication and repair protein RecF [Oenococcus oeni PSU-1]
 gi|290889524|ref|ZP_06552614.1| hypothetical protein AWRIB429_0004 [Oenococcus oeni AWRIB429]
 gi|122277679|sp|Q04HR3|RECF_OENOB RecName: Full=DNA replication and repair protein recF
 gi|116090855|gb|ABJ56009.1| DNA replication and repair protein RecF [Oenococcus oeni PSU-1]
 gi|290480722|gb|EFD89356.1| hypothetical protein AWRIB429_0004 [Oenococcus oeni AWRIB429]
          Length = 373

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 155/378 (41%), Gaps = 16/378 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRNY SL++ F     + +GDN  GKTN+LEAI  LS  R  R  +  D+
Sbjct: 1   MFLNSLKLKDFRNYKSLQVDFSNSINVLIGDNAQGKTNLLEAIYILSMARSHRDNNDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S      F+ + G          LE R  R+ + + +N +    + +   +L    
Sbjct: 61  INWSSD-----FSDITGEVQSKMGKFPLEVRITRTGKKVFVNHLTENRLSDYIGNLHTVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------Y 177
             P    +  G    RR+F+D     +   +   ++ +  +++ RN  L           
Sbjct: 116 FAPEDLDLVKGSPGVRRKFIDSEFGQMSANYLFNLLQYRSVLKNRNAYLKNIKWIGNNPK 175

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-PHIKLSLTGFLDGKF 236
            D  +   +  Q+ + G +I   R  ++  L     +  +  +    + +    F     
Sbjct: 176 IDEDYLKVLNDQLIDFGSEIIFQRFVLVKELEKYSYQIHKAISRNEKLTIKYASFSGIDD 235

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
             +   + + +  +L   +  +   + T +GPH  DL      K +  +  S G+Q+   
Sbjct: 236 QSTKEEISKIFNNQLLKNKTRELFLKSTSVGPHHDDLKFSINGKEVG-SFASQGQQRTTA 294

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   ++   TG  PILLLD++ + LD D++  L   + D   Q F+T T  S  +
Sbjct: 295 LSVRLAEIEMMKYETGEYPILLLDDVLSELDGDRQTQLLNFIQDK-VQTFLTTTSLSDVE 353

Query: 357 -SLNETAKFMRISNHQAL 373
             L +  K  ++     +
Sbjct: 354 RDLIKDPKIYQVKGGTLV 371


>gi|240145739|ref|ZP_04744340.1| DNA replication and repair protein RecF [Roseburia intestinalis
           L1-82]
 gi|257202155|gb|EEV00440.1| DNA replication and repair protein RecF [Roseburia intestinalis
           L1-82]
          Length = 368

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 89/373 (23%), Positives = 163/373 (43%), Gaps = 19/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + ++ FRNY +L + FD    I  GDN  GKTNILEA       +  + +   ++
Sbjct: 1   MIIQSIELNNFRNYENLHISFDEGTNILFGDNAQGKTNILEAAYLSGTTKSHKGSKDKEM 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G + +   T     G +   D+ +K         + + +N + ++   EL   L I 
Sbjct: 61  IRFGTNEAHLRTMVLKNGKQYQIDMHLKHNRS-----KGIAVNKIPMKKASELFGILNIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERR FLD  +  +D  +   + ++ +++  RN+LL +  +     
Sbjct: 116 FFSPEDLNIIKNGPSERRHFLDAELCQLDKIYLSDLSNYNKILNQRNKLLKDMVYRPELS 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+A+ G KI   R + +  L+ L+ E   + +    +L L+       D   
Sbjct: 176 DTLPVWDMQLADTGKKIIRRREKFVKELNELVHEIHYRISGGREELFLSYEPSVSAD--- 232

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                   ++L   +  D    +T +GPHR DL+       I    GS G+Q+   + + 
Sbjct: 233 -----LLEQELERVKLRDLKQCQTSVGPHRDDLLFSIAGVDIR-KFGSQGQQRTSALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+  +    P+LLLD++ + LD +++N L   + D  + I  TG D+ + +   E
Sbjct: 287 LSEIELVRKSIHDTPVLLLDDVLSELDSNRQNYLLNSICDTQTIITCTGLDEFIRNRF-E 345

Query: 361 TAKFMRISNHQAL 373
             K   + + Q  
Sbjct: 346 INKVFEVISGQVF 358


>gi|254437923|ref|ZP_05051417.1| hypothetical protein OA307_2793 [Octadecabacter antarcticus 307]
 gi|198253369|gb|EDY77683.1| hypothetical protein OA307_2793 [Octadecabacter antarcticus 307]
          Length = 369

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 130/368 (35%), Positives = 198/368 (53%), Gaps = 9/368 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +S FR++    L  D +     G NG GKTNILEA+S LSPGRG RRAS  D+TR
Sbjct: 6   LSHLTLSHFRSHKRATLDLDGRTVAIYGPNGAGKTNILEAVSILSPGRGLRRASSEDMTR 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 +   A +  +    +I    E    R  +     D        L +  R+ WL+
Sbjct: 66  RPEALGWKVTADLTSLNQRHEIESWSENGGSRQTKI----DGKAAAQTALGRIGRVLWLI 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P+MDR++   +  RRRFLDR   + +P H    + +E+ MR RNRLL +   D+ W S++
Sbjct: 122 PAMDRLWIEGAEGRRRFLDRATLSFEPGHADAALKYEKAMRERNRLLKDMVRDAHWYSAL 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E QMA+ G +I+  R+E ++ L++   +   +  FP   L+LT   D   D     +   
Sbjct: 182 ERQMADAGAQIHRNRLETLDLLTN--AQQAAQTAFPTAWLTLT-HSDPACDAPDDPI--A 236

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
                 + R  D  + RTLIGPHR+DL   +  K +     STGEQK +L+ + LA+AR 
Sbjct: 237 LLAAFANNRPRDMAAGRTLIGPHRADLDAIFAAKDVPAKDCSTGEQKALLISLILANARA 296

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +++  G  PILLLDE++AHLD  +R AL+  ++ +G+Q FMTGT   +FD L   A+++ 
Sbjct: 297 LADDFGAPPILLLDEVAAHLDATRRAALYSEISALGAQAFMTGTGLELFDELGAAAQYVH 356

Query: 367 ISNHQALC 374
           +++   + 
Sbjct: 357 VTDENGVS 364


>gi|188579290|ref|YP_001922735.1| DNA replication and repair protein RecF [Methylobacterium populi
           BJ001]
 gi|179342788|gb|ACB78200.1| DNA replication and repair protein RecF [Methylobacterium populi
           BJ001]
          Length = 385

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 141/377 (37%), Positives = 203/377 (53%), Gaps = 4/377 (1%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +    ++  L   +FRN+  L L    +    VG+NG GKTNILEA+S   PGRG RRA 
Sbjct: 4   LPGGTRLTRLIARDFRNHIDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRAD 63

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNK 118
            A + R+G P  F+  A +E  E    +    E    D R  R  +I+          ++
Sbjct: 64  LATMARVGGPGGFAVSATLETAEAEHRLGSGYEPPGYDGRGTRVCRIDGAPAPSPVAFSE 123

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            LRI WL P  D +F G + +RRRFLDR+V A+D  H  R+   ER +R RNRLL E   
Sbjct: 124 FLRIVWLTPDFDGLFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPD 183

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFD 237
           D  W  ++E ++AELGV + +AR E +  L  LI E       FP   + L G LD    
Sbjct: 184 DGRWLDAVEREVAELGVAVALARRETVERLDRLIAETRDDAAPFPWASIRLEGDLDDLVA 243

Query: 238 Q-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                  ++ + + L  GR  D  + RTLIGP  +DL+V +  K +  A  STGEQK +L
Sbjct: 244 VWPALEAEDRFRRALMQGRHRDRAAGRTLIGPQTTDLLVRHGPKDVPAATASTGEQKALL 303

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           +G+ LAHARL+   +G  P++LLDE++AHLD  +R  LF  +  +  Q++MTG D ++F 
Sbjct: 304 IGLVLAHARLVRAMSGLTPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFT 363

Query: 357 SLNETAKFMRISNHQAL 373
            L   A  + I++ + +
Sbjct: 364 ELQGRADMVNIADGRIV 380


>gi|319898311|ref|YP_004158404.1| DNA replication and repair protein [Bartonella clarridgeiae 73]
 gi|319402275|emb|CBI75814.1| DNA replication and repair protein [Bartonella clarridgeiae 73]
          Length = 380

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 170/377 (45%), Positives = 231/377 (61%), Gaps = 10/377 (2%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++ ++ L ++ +RNY SL L    QH +  G NG GKTN+LEA+SFLSPGRG RRA+Y+
Sbjct: 9   HKVAVRQLKLANYRNYCSLVLHLLGQHVVLTGRNGAGKTNLLEALSFLSPGRGLRRAAYS 68

Query: 63  DVT---RIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           DV+   R G+   F  FAR+E  + G  +I   LE  D  S R + IN +     D L  
Sbjct: 69  DVSFSERKGA--GFVVFARLECALYGEVNIGTALEVND--SSRKVHINGINEAS-DCLTD 123

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           +  IS L PSMDR+F+G S++RRRFLDRMV +ID  H RR+ D++R+MR RNRL  +   
Sbjct: 124 YCHISILTPSMDRLFTGPSLDRRRFLDRMVLSIDSLHGRRIADYDRVMRARNRLFLDRNN 183

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D +W  ++E QMAEL   I  AR+++I  L+ +  +      FP   L + GFL+    +
Sbjct: 184 DRAWLDALEVQMAELATAIAAARIDVIQLLNDMFAQTSSCIPFPRALLKVDGFLEKALRE 243

Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   ++E++  +L   R +D  + RTL GPHR+DL V Y DK +     STGEQK +L 
Sbjct: 244 TSAIEVEEQFLHRLRKNRAIDCAAGRTLEGPHRTDLQVFYADKNMDATFCSTGEQKALLT 303

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           G+ L HARL S  +  APILLLDEI+AH D  +R ALF I+ D+G Q FMTGTD  +FDS
Sbjct: 304 GLVLCHARLTSTISNMAPILLLDEIAAHFDSHRRAALFDILDDLGGQAFMTGTDHVLFDS 363

Query: 358 LNETAKFMRISNHQALC 374
           L   A+F  I N   L 
Sbjct: 364 LKGRAEFFEIENGILLS 380


>gi|197334005|ref|YP_002154783.1| DNA replication and repair protein RecF [Vibrio fischeri MJ11]
 gi|226737848|sp|B5FEV5|RECF_VIBFM RecName: Full=DNA replication and repair protein recF
 gi|197315495|gb|ACH64942.1| DNA replication and repair protein RecF [Vibrio fischeri MJ11]
          Length = 359

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 163/369 (44%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I++FRN  +  +         +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLSRLIINDFRNITTCDIQLSPGFNFVIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      F    R    E L ++ I +  + D +   ++I     + + +L K L +  
Sbjct: 61  IRNDCDELF-IHGRFTTPE-LFELPIGINKQRDGTT-EVKIGGESGQKLAQLAKVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF ++P         +RL + RN LL          S
Sbjct: 118 IHPEGFELVTDGPKFRRAFIDWGVFHVEPAFYDAWSRVKRLTKQRNALLKTANSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  KI+  RV+ IN +S    +  Q    P   + L+ +     +       
Sbjct: 177 YWDLELAQLSEKIDQWRVDYINHISEATQQICQA-FLPEYDIKLSYYRGWDRETP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T+ GP+++DL +      +     S G+ K+++  + LA  
Sbjct: 231 --YAELLKKNFERDKQLGYTVGGPNKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L + +    +Q+F++  T + + D  ++ +K
Sbjct: 288 QHLTEATGKQCIYLIDDFASELDSHRRQLLAQYLKQTKAQVFISSITAEQIADMHDDESK 347

Query: 364 FMRISNHQA 372
              I + + 
Sbjct: 348 MFEIEHGKI 356


>gi|163802135|ref|ZP_02196030.1| recombination protein F [Vibrio sp. AND4]
 gi|159173940|gb|EDP58750.1| recombination protein F [Vibrio sp. AND4]
          Length = 359

 Score =  318 bits (815), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 154/369 (41%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT+ILEA+  L  GR F+ +    V
Sbjct: 1   MPLSRLIIQQFRNIKACDIDLSAGFNFLIGPNGSGKTSILEAVYLLGHGRSFKSSLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +P        F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTARSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R   I  +   + E + +   P  ++ L  +     D       
Sbjct: 177 YWDQEMARLAENISQWRALYIEQM-KTVAETICQTFLPEFEIQLKYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YHEILEKNFERDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  TD  + D L++T K
Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDNQIADMLDDTGK 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 LFHVEHGRI 356


>gi|167629174|ref|YP_001679673.1| DNA replication and repair protein recf [Heliobacterium
           modesticaldum Ice1]
 gi|226737804|sp|B0TAL0|RECF_HELMI RecName: Full=DNA replication and repair protein recF
 gi|167591914|gb|ABZ83662.1| DNA replication and repair protein recf [Heliobacterium
           modesticaldum Ice1]
          Length = 372

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 166/372 (44%), Gaps = 11/372 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ + ++ FRNY  L++ F     IFVG NG GKTN+LE+I+ LS G   R A  A++
Sbjct: 1   MQIQAIELAHFRNYRGLQVDFMPGVNIFVGANGQGKTNLLESIALLSGGGSHRDARDAEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETR-DDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +         + R++ M       + +E        +  ++N+  +R + +L++ +   
Sbjct: 61  VQWQE-----AYYRIKAMGTADGQPVVIELAFGGERRKLAKVNNRRLRRIADLSETMNTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDS 180
              P    +  G   +RRR+LDR +    P +   +  + R++  RN LL     G   +
Sbjct: 116 VFSPEDLSLVKGSPAQRRRYLDRELSQASPAYGDVLSRYARVLTQRNSLLRRLREGSATA 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +     + Q+A L V+    R++ +  ++    +  +  +    ++ LT           
Sbjct: 176 AELELWDDQLAPLAVETLARRLDGLARIAPYARQIYRGLSRDKEQIELTYRSSFPLPDDR 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E Y K L + R  +   + TL GPHR DL +    +   I +GS G+Q+ + + + 
Sbjct: 236 SRWLEAYRKALQERRAEEIARQATLTGPHRDDLQLFLNGRDARI-YGSQGQQRSIALSLK 294

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359
           LA    I       PI+LLD++ + LD D+R  L   +     Q+F+T T    F     
Sbjct: 295 LAEIAFIHQIKKEYPIVLLDDVMSELDPDRRQQLLSELESKNIQVFITTTHLHAFSPEQL 354

Query: 360 ETAKFMRISNHQ 371
             A   RI   Q
Sbjct: 355 GRAGIYRIQAGQ 366


>gi|255027379|ref|ZP_05299365.1| recombination protein F [Listeria monocytogenes FSL J2-003]
          Length = 340

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 149/342 (43%), Gaps = 11/342 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       S+ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +        +   
Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASITLNGDD 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + I
Sbjct: 236 PEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
            LA   LI   TG  P+LLLD++ + LD+ +++ L   +   
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK 336


>gi|240136786|ref|YP_002961253.1| putative RecF protein [Methylobacterium extorquens AM1]
 gi|240006750|gb|ACS37976.1| putative RecF protein [Methylobacterium extorquens AM1]
          Length = 385

 Score =  318 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 143/377 (37%), Positives = 203/377 (53%), Gaps = 4/377 (1%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +    ++  L   +FRN+  L L    +    VG+NG GKTNILEA+S   PGRG RRA 
Sbjct: 4   LPGGPRLTRLIARDFRNHVDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRAD 63

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNK 118
            A + R+G P  F+  A +E  E         E    D R  R  +I+          ++
Sbjct: 64  LATMARVGGPGGFAVSATLEASEAEHRFGSGYEPPGYDGRGTRVCRIDGANAPSPVAFSE 123

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            LRI WL P  D +F G + +RRRFLDR+V A+D  H  R+   ER +R RNRLL E   
Sbjct: 124 FLRIVWLTPDFDGLFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPD 183

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFD 237
           D  W  ++E ++AELGV + +AR E +  L  LI E       FP   L L G LD    
Sbjct: 184 DGRWLDAVEREVAELGVAVALARRETVERLDRLIAETRDDAAPFPWASLRLEGDLDDLVA 243

Query: 238 Q-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                  ++ + + L  GR  D  + RTLIGP  +DL+V +  K +  A  STGEQK +L
Sbjct: 244 VWPALEAEDRFRRALMQGRHRDRAAGRTLIGPQTTDLVVRHGPKDVPAATASTGEQKALL 303

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           +G+ LAHARL+   +G AP++LLDE++AHLD  +R  LF  +  +  Q++MTG D ++F 
Sbjct: 304 IGLVLAHARLVRAMSGLAPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFA 363

Query: 357 SLNETAKFMRISNHQAL 373
            L   A  + I++ + +
Sbjct: 364 ELEGRADMVNIADGRIV 380


>gi|227529859|ref|ZP_03959908.1| recombination protein F [Lactobacillus vaginalis ATCC 49540]
 gi|227350228|gb|EEJ40519.1| recombination protein F [Lactobacillus vaginalis ATCC 49540]
          Length = 374

 Score =  317 bits (813), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 146/374 (39%), Gaps = 16/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRNY  L + F     + +G N  GKTN+LEAI  LS  R  R  +  ++
Sbjct: 1   MILSELHLHNFRNYEDLTVHFAPGVNVLIGHNAQGKTNMLEAIYALSLTRSHRTHNNREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 S     A + G+       + LE       +  ++N +    +      L    
Sbjct: 61  INWQHKS-----ATISGIVQKTSGRVPLELEFTSKGKRAKVNHLEQARLSTYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR F+D     +  ++      +  L+R RN+ L +       D 
Sbjct: 116 FAPEDLSLVKGAPALRRHFMDMEFSQMSSKYLYNAGQYRTLLRQRNKYLKQLKYGQQHDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                +  Q+A  G ++ IAR + +  L     +  +K +    +L L      K ++  
Sbjct: 176 VLLGVLSDQLAAYGAEVIIARYQFLQHLEKWASQLHEKISLNAEQLRLDYITQLKLNEE- 234

Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
             +++ Y   L         +     T+ GP R D+      K +  + GS G+Q+   +
Sbjct: 235 TTVEQAYQDLLGLYQSHVNWEIEKGTTMYGPQRDDIHFMVNGKNV-QSFGSQGQQRTTAL 293

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA   L+   TG  P+LLLD++ + LD  ++  L     D   Q F+T T  +    
Sbjct: 294 SVKLAEIDLMKEQTGEYPLLLLDDVLSELDTIRQTHLLTAFQDK-VQTFLTTTSLNDVAR 352

Query: 357 SLNETAKFMRISNH 370
            L    K   I + 
Sbjct: 353 QLIHQPKIFEIEHG 366


>gi|269962693|ref|ZP_06177038.1| recF protein [Vibrio harveyi 1DA3]
 gi|269832616|gb|EEZ86730.1| recF protein [Vibrio harveyi 1DA3]
          Length = 359

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 155/369 (42%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V
Sbjct: 1   MPLSRLIIQQFRNIKACDIDLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +P        F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTARSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R   I  + S + E + +   P  ++ L  +     D       
Sbjct: 177 YWDQEMARLAENISQWRALYIEQMKS-VAETICQTFLPEFEIQLKYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YHEILEKNFERDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L++T K
Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDTGK 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 LFHVEHGRI 356


>gi|218528086|ref|YP_002418902.1| DNA replication and repair protein RecF [Methylobacterium
           chloromethanicum CM4]
 gi|218520389|gb|ACK80974.1| DNA replication and repair protein RecF [Methylobacterium
           chloromethanicum CM4]
          Length = 385

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 143/377 (37%), Positives = 203/377 (53%), Gaps = 4/377 (1%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +    ++  L   +FRN+  L L    +    VG+NG GKTNILEA+S   PGRG RRA 
Sbjct: 4   LPGGPRLTRLIARDFRNHVDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRAD 63

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNK 118
            A + R+G P  F+  A +E  E         E    D R  R  +I+          ++
Sbjct: 64  LATMARVGGPGGFAVSATLEASEAEHRFGSGYEPPGYDGRGTRVCRIDGANAPSPVAFSE 123

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            LRI WL P  D +F G + +RRRFLDR+V A+D  H  R+   ER +R RNRLL E   
Sbjct: 124 FLRIVWLTPDFDGLFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPD 183

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFD 237
           D  W  ++E ++AELGV + +AR E +  L  LI E       FP   L L G LD    
Sbjct: 184 DGRWLDAVEREVAELGVAVALARRETVERLDRLIAETRDDAAPFPWASLRLEGDLDDLVA 243

Query: 238 Q-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                  ++ + + L  GR  D  + RTLIGP  +DL+V +  K +  A  STGEQK +L
Sbjct: 244 VWPALEAEDRFRRALMQGRHRDRAAGRTLIGPQTTDLVVRHGPKDVPAATASTGEQKALL 303

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           +G+ LAHARL+   +G AP++LLDE++AHLD  +R  LF  +  +  Q++MTG D ++F 
Sbjct: 304 IGLVLAHARLVRAMSGLAPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFA 363

Query: 357 SLNETAKFMRISNHQAL 373
            L   A  + I++ + +
Sbjct: 364 ELEGRADMVNIADGRIV 380


>gi|163797312|ref|ZP_02191265.1| recombination protein F [alpha proteobacterium BAL199]
 gi|159177403|gb|EDP61959.1| recombination protein F [alpha proteobacterium BAL199]
          Length = 410

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 144/383 (37%), Positives = 222/383 (57%), Gaps = 13/383 (3%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           + +R+ ++ L ++ FRNYA+  L  D    +  G NG GKTN+LEA+SFL+PGRG RRA 
Sbjct: 21  VPHRLAVRRLTLTRFRNYAAESLDIDGPAVVLTGPNGAGKTNLLEAVSFLTPGRGLRRAR 80

Query: 61  YADVTRI-------GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            ++V R+        S + ++  ARV+G  G  +I    +   D   R ++++    R  
Sbjct: 81  LSEVDRLVPADTIDTSSTAWAVAARVDGKLGAVNIGTGRDPDSDGERRLVRVDGAPARSQ 140

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
             L  H+ +SWL P+MDR+F   +  RRRFLDRMVFA DP H  R+  +E   R RNRL+
Sbjct: 141 STLGDHVTVSWLTPAMDRLFLDGASGRRRFLDRMVFAFDPEHSTRVNHYEHAWRERNRLI 200

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            +G  D +W +++E  +A  G+ +  AR  ++  L+ +  E   +  FP  +L+L G +D
Sbjct: 201 KDGVRDPAWFAALEETLAATGIAVAAARSSLVARLNQVCAET--EPPFPAAELTLDGTVD 258

Query: 234 GKFDQSFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
              D++    +++     L  GR+  S       GPHRSDL+V +  K +     STGEQ
Sbjct: 259 RWLDEAPALEIEDRLRATLAAGRRPGSPE---AEGPHRSDLLVRHVPKNMPAERCSTGEQ 315

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           K +LVGI LAHARL +   G +PILLLDE++AHLD+ +R ALF  V  +G Q ++TGTD+
Sbjct: 316 KALLVGIVLAHARLQAIEEGASPILLLDEVAAHLDDRRRTALFEAVLALGGQAWLTGTDR 375

Query: 353 SVFDSLNETAKFMRISNHQALCI 375
            VF  + + A+ + +++ +   +
Sbjct: 376 GVFAPIADRAQIVEVTDGRLAPV 398


>gi|322830736|ref|YP_004210763.1| DNA replication and repair protein RecF [Rahnella sp. Y9602]
 gi|321165937|gb|ADW71636.1| DNA replication and repair protein RecF [Rahnella sp. Y9602]
          Length = 362

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 152/372 (40%), Gaps = 14/372 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEA+  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEAADLDPSPGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P F       +G +    I +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHDQPEFVLHARVDDGGDRELSIGLSKSRQGDSKVR---IDGSDGHKVSELAQMLPMQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR F+D   F  DP       +  RL++ RN  L +     +   
Sbjct: 118 ITPEGFTLLNGGPKYRRAFIDWGCFHHDPGFFIAWSNLRRLLKQRNAALRQ-VSRYAQIR 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I      +  P   LS +       +       
Sbjct: 177 AWDQELIPLAGRISEWRAAYSDAIAADISATCA-QFLPEFALSFSFQRGWDKET------ 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EY + L    + D     T  GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 230 -EYGELLERNFERDRALTYTASGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD D+R  L   +    +Q+F++    + V D + E  K
Sbjct: 288 EFLTRQSGRRCLYLLDDFASELDADRRRLLADRLKATQAQVFVSAISAEQVTDMMGEKGK 347

Query: 364 FMRISNHQALCI 375
             R+   +   +
Sbjct: 348 MFRVEQGKIAVL 359


>gi|91228346|ref|ZP_01262274.1| recombination protein F [Vibrio alginolyticus 12G01]
 gi|269965276|ref|ZP_06179397.1| recF protein [Vibrio alginolyticus 40B]
 gi|91188106|gb|EAS74410.1| recombination protein F [Vibrio alginolyticus 12G01]
 gi|269830077|gb|EEZ84305.1| recF protein [Vibrio alginolyticus 40B]
          Length = 359

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 153/369 (41%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEA+  L  GR F+ +    V
Sbjct: 1   MPLSRLIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +P   +    F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYQAWGRFKRLNKQRNALLKTANSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R   I  +   + E + +   P  ++ L  +     D       
Sbjct: 177 YWDQEMAGLAENISQWRASYIEQM-KTVAETICQTFLPEFEIQLKYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YHEILEKNFERDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++   G   I L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L++  K
Sbjct: 288 QHLTEMAGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDNGK 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 LFHVEHGRI 356


>gi|153835129|ref|ZP_01987796.1| DNA replication and repair protein RecF [Vibrio harveyi HY01]
 gi|156972779|ref|YP_001443686.1| recombination protein F [Vibrio harveyi ATCC BAA-1116]
 gi|166221877|sp|A7N1F1|RECF_VIBHB RecName: Full=DNA replication and repair protein recF
 gi|148868401|gb|EDL67515.1| DNA replication and repair protein RecF [Vibrio harveyi HY01]
 gi|156524373|gb|ABU69459.1| hypothetical protein VIBHAR_00444 [Vibrio harveyi ATCC BAA-1116]
          Length = 357

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 83/369 (22%), Positives = 154/369 (41%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V
Sbjct: 1   MPLSRLIIQQFRNIKACDIDLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +P        F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTARSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R   I  +   + E + +   P  ++ L  +     D       
Sbjct: 177 YWDQEMAHLAENISQWRALYIEQM-KTVAETICQTFLPEFEIQLKYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YHEILEKNFERDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L++T K
Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDDTGK 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 LFHVEHGRI 356


>gi|283480417|emb|CAY76333.1| DNA replication and repair protein recF [Erwinia pyrifoliae DSM
           12163]
          Length = 397

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 149/369 (40%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 37  MALTRLLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 96

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R+ G E    + +      D  VR   I+      V EL + L +  
Sbjct: 97  IRHEQDAF-VLHGRIAGAERETSVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 152

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR ++D   F  +P       +  RL++ RN  L +         
Sbjct: 153 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIR 211

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++A L  +I+  R     A+++ I      +  P  +LS +       +       
Sbjct: 212 AWDQELAPLAEQISQWRAAYSRAIAADINATCA-QFLPEFQLSFSFQRGWDKES------ 264

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D     T  GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 265 -DYAGLLERNFERDRALTYTASGPHKADFRIRAQGTPVE-DLLSRGQLKLLMCALRLAQG 322

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++   G   + L+D+ ++ LDE +R+ L   +    +Q+F++       FD  +E  K
Sbjct: 323 EFLTRQNGRRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMADEKGK 382

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 383 MFHVEQGKI 391


>gi|220920057|ref|YP_002495358.1| DNA replication and repair protein RecF [Methylobacterium nodulans
           ORS 2060]
 gi|219944663|gb|ACL55055.1| DNA replication and repair protein RecF [Methylobacterium nodulans
           ORS 2060]
          Length = 382

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 136/370 (36%), Positives = 202/370 (54%), Gaps = 5/370 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L   +FRN+ASL L         VG+NG GKTNILEA+S  +PGRG RRA +A + 
Sbjct: 8   RVTRLIARDFRNHASLDLGVSRPFVALVGENGAGKTNILEALSLFAPGRGLRRADFAAMA 67

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           R G P  F+    + G  G   +    E   TR++R+ R  +I+           +HLR+
Sbjct: 68  REGGPGGFAVSLNLAGPHGEHRVGTAWEPPQTREERAGRLCRIDGASAPSPTAFAEHLRV 127

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P +D +F G + ERRRFLDR+V A+D  H  R+   ER +R RNRLL E   D+ W
Sbjct: 128 VWLTPDLDALFRGPAGERRRFLDRLVLAVDAGHGARVSALERALRSRNRLLEERPDDTPW 187

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFDQ-SF 240
             ++E ++AEL + + +AR E +  L  LI     +   FP   + L G +D        
Sbjct: 188 LDAVEREVAELAIAVALARRETVERLDRLILASRDEASPFPWAGVRLEGEIDDLVAVWPA 247

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              ++ +   L   R  D  + RTL GP  SDL+V +  K +     STGEQK +L+G+ 
Sbjct: 248 VDAEDRFRAMLRQNRFRDRAAGRTLAGPQASDLLVRHGPKDVPAGTASTGEQKALLIGLV 307

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LAHARL++  +G  P++LLDE++AHLD  +R  LF  +  +  Q++MTG D ++F  L  
Sbjct: 308 LAHARLVAGMSGLPPLVLLDEVAAHLDPRRRAGLFDALEALPGQVWMTGADPALFAELGN 367

Query: 361 TAKFMRISNH 370
               + +++ 
Sbjct: 368 RGDLIAVADG 377


>gi|21961124|gb|AAM87653.1|AE014012_10 ssDNA and dsDNA binding protein [Yersinia pestis KIM 10]
 gi|45438596|gb|AAS64142.1| DNA metabolism protein [Yersinia pestis biovar Microtus str. 91001]
          Length = 440

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR      V
Sbjct: 80  MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 139

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  A + +    + D  VR   I+      V EL + L +  
Sbjct: 140 IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 195

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 196 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 254

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 255 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 307

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 308 -DYGELLARQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 365

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 366 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 425

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 426 MFRVEHGKI 434


>gi|253987486|ref|YP_003038842.1| recombination protein F [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253778936|emb|CAQ82096.1| dna replication and repair protein recf [Photorhabdus asymbiotica]
          Length = 363

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 155/369 (42%), Gaps = 13/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN A   L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MTLTRLFIRDFRNIADADLPLATGFNFLVGPNGSGKTSVLEAIYTLGHGRSFRSIQSGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     R+E  E   + SI L    +   + ++I+      + EL K L +  
Sbjct: 61  IRHNCDEF-VLHGRLEQRENARESSIGLSKNRNGDSK-VRIDGSDGGKIAELAKMLPMQL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR F+D   F  DPR     ++ +RL++ RN  L +     S   
Sbjct: 119 ITPEGFTLLNGGPKYRRAFIDWGCFHNDPRFFSAWVNLKRLLKQRNAALRQ-VTHYSQIR 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +IN  R E +  +   I +   K+  P   L  +       +       
Sbjct: 178 PWDQELAPLANQINQWRTEYVTNIIQGIADTC-KQFLPEFILRFSFQQGWDKES------ 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D     T  GPH++DL +      +     S G+ K+++  + LA  
Sbjct: 231 -DYAELLERQFERDRALTYTASGPHKADLRIRVEGTPVEDML-SRGQLKLLMCALRLAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363
              +   G   + LLD+ ++ LD  +R  L   +    +Q+F++      V D L+  ++
Sbjct: 289 EYFTRQNGQQCLYLLDDFASELDAGRRQLLAERLKSTQAQVFVSAISPGQVTDMLDGNSR 348

Query: 364 FMRISNHQA 372
             R+ N + 
Sbjct: 349 MFRVENGKI 357


>gi|269103822|ref|ZP_06156519.1| DNA recombination and repair protein RecF [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163720|gb|EEZ42216.1| DNA recombination and repair protein RecF [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 360

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 155/369 (42%), Gaps = 13/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN A   L         +G NG GKT++LEA+ +L  GR FR      V
Sbjct: 1   MALTRLIVKDFRNIADCDLELSPSFNFLIGANGSGKTSVLEAVHYLGHGRSFRSHLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      F    RV+G        + +  + D +   ++I     + + +L + L +  
Sbjct: 61  IRHEQSELF-VHGRVQGEGTQLPQPVGINKKRDGTT-EVKIAGEGNQKLAQLAQILPLQL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +  G    RR F+D  VF ++P+  +     +RL + RN LL          S
Sbjct: 119 ITPEGFDLLIGGPKFRRAFIDWGVFYVEPKFFQAWSRLKRLTKQRNALLKTATSYRE-LS 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +I++ R + + A+     E       P   + L  +   + +       
Sbjct: 178 YWDQELAQLAEQIDLWRSDYLAAVKQKANEIC-LGFLPEFDIQLGYYRGWEKETP----- 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L    + D     T  GPH++DL +      +     S G+ K+++  + LA  
Sbjct: 232 --YGELLRRNFERDCQLGYTASGPHKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
             ++  TG   I L+D+ ++ LD  +R  L + + +  +Q+F++        D  +E  K
Sbjct: 289 LHLTEVTGKQCIYLIDDFASELDSHRRALLAQRLKETHAQVFISAISADQITDMQDEKGK 348

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 349 MFLVEHGKI 357


>gi|260774983|ref|ZP_05883883.1| DNA recombination and repair protein RecF [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260609073|gb|EEX35232.1| DNA recombination and repair protein RecF [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 360

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 150/369 (40%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEA+  L  GR F+ +    V
Sbjct: 1   MPLSRLIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNDCDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +         F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R   +  ++    E  Q    P  ++ L  +     D       
Sbjct: 177 YWDQEMARLAENISQWRATYVEQMTEKATEICQ-TFLPEFEIQLKYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y   L +  + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YQAILENNFERDQALGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   + L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L+E  +
Sbjct: 288 QHLTEMTGKQCVYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITESQIADMLDENGR 347

Query: 364 FMRISNHQA 372
              + +   
Sbjct: 348 MFHVEHGTI 356


>gi|229824638|ref|ZP_04450707.1| hypothetical protein GCWU000282_01985 [Catonella morbi ATCC 51271]
 gi|229786009|gb|EEP22123.1| hypothetical protein GCWU000282_01985 [Catonella morbi ATCC 51271]
          Length = 384

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 95/377 (25%), Positives = 160/377 (42%), Gaps = 18/377 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +S FRNY  + L      TI  G+N  GKTN+LE+I  LS  +  R    +++
Sbjct: 1   MKLKTLKLSHFRNYQGIELCLGPGLTILTGENAQGKTNLLESIFLLSLAKSHRTNHDSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       AR+E +    +  I L     +  +  Q+N +    +           
Sbjct: 61  IEWDQEQ-----ARIEAVIETKNYEIPLALTLTKKGKVAQVNYLDQSKLSHFVGQFNTVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P   ++  G    RRRFLD  +   +P +   ++ ++RL++ RN  L +      FD 
Sbjct: 116 FAPEDMQLIKGAPNLRRRFLDIELGQANPIYLNHLLTYQRLLKQRNSYLKQEGRGKKFDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+ + G  +   R+E +  L  +     Q  +    +L L      +  Q  
Sbjct: 176 VFFEILTEQLCQEGAHLIQYRMEFLEKLGQIASPIHQNLSNGRDQLRLEYINGSQVYQPL 235

Query: 241 CALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            +L+E   + L     +  R+ D     TL GPHR D +    DK      GS G+Q+ +
Sbjct: 236 -SLEERIKQLLDQASTYASRERD--QGTTLFGPHRDDFMTYVNDKKAQF-FGSQGQQRTI 291

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           ++ + LA   LI    G  P+LLLD++ + LD+D+++ L   + D    I  T T K + 
Sbjct: 292 VLSLKLAEIELIKQARGEYPVLLLDDVLSELDDDRQHILMSYIKDKVQTILTTATIKGLK 351

Query: 356 DSLNETAKFMRISNHQA 372
                 A+   IS    
Sbjct: 352 LHQLPHAEIFYISAGNI 368


>gi|310657320|ref|YP_003935041.1| DNA replication and repair protein recf [Clostridium sticklandii
           DSM 519]
 gi|308824098|emb|CBH20136.1| DNA replication and repair protein recF [Clostridium sticklandii]
          Length = 361

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 87/372 (23%), Positives = 163/372 (43%), Gaps = 12/372 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +S FRNY+     F     + +G NG GKTN++EAI  LS GR FR     ++
Sbjct: 1   MLINNITLSNFRNYSKAEANFSENLNLIIGKNGQGKTNLIEAIYMLSLGRSFRTNKDKEM 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               +  ++ S+     G     +I +  + +     + ++IN + I  + +L   + I 
Sbjct: 61  MMFDALNTYISSEITAMGRNYKIEIKLGKDIK-----KAVKINSIPIEKLTDLLGIINIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   ++      ERR F+DR +  + P +   +  +++++  RN LL     D +  
Sbjct: 116 IFSPEDLKLVREGPKERRGFMDREISQLRPNYYSLIHKYQKILVQRNNLLKNTKIDENLL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+A +  KI   R E I+ ++ +      + +    KL++    +          
Sbjct: 176 DVYDEQLAIVSQKIMAYRKEFIDNITPIASANHYRISSGKEKLNIKYLPNITASSEIEFD 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                 K    R  D   R T  GPH+ D+ +   D  +  + GS G+++   + + L+ 
Sbjct: 236 SSYIFNKFKTSRAEDIRRRTTTSGPHKDDIGIYLGDMDLR-SFGSQGQKRSAAISLKLSE 294

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            +LI       P++LLD+I + LD  ++  L   +++I  Q F+T T+   F   N+  K
Sbjct: 295 IQLIFEEKNEYPVVLLDDIFSELDISRQKMLIDSLSEI--QTFVTTTEAIDF---NKEVK 349

Query: 364 FMRISNHQALCI 375
              I N +   +
Sbjct: 350 TYLIENAKVSLL 361


>gi|332559821|ref|ZP_08414143.1| recombination protein F [Rhodobacter sphaeroides WS8N]
 gi|332277533|gb|EGJ22848.1| recombination protein F [Rhodobacter sphaeroides WS8N]
          Length = 363

 Score =  316 bits (810), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 205/370 (55%), Gaps = 17/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++ + R+ FD +   FVG NG GKTN+LEAIS LSPGRG RRA+  ++
Sbjct: 4   LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNLLEAISLLSPGRGLRRAAADEI 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A V G+  + +I    E    R VR     D        L + LRI W
Sbjct: 64  ARRPEALGWKVAAAVTGLHSVHEIETWAEGGGARQVRI----DGKAATQVMLGRLLRIVW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR+++  +  RRRFLDR+  +  P H   ++D+E+ MR RNRLL E   D+ W  
Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E +MAE    I   R E +  L  +  +   +  FP   LS+                
Sbjct: 180 ALEGRMAEAARAIRAHREEAVARL--MAAQGAAETAFPRAVLSVAS-----------DDP 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+ A    +GR+ D  + RTL+GPHR+DL   Y  K +  A  STGEQK +L+ + LA+A
Sbjct: 227 EDLAAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G AP+LLLDE++AHLDE +R ALF  +  +G+Q FMTGT   +F +L + A+ 
Sbjct: 287 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQR 346

Query: 365 MRISNHQALC 374
           + ++  Q L 
Sbjct: 347 IEVTEAQGLS 356


>gi|150387857|ref|YP_001317906.1| DNA replication and repair protein RecF [Alkaliphilus
           metalliredigens QYMF]
 gi|166918718|sp|A6TJ79|RECF_ALKMQ RecName: Full=DNA replication and repair protein recF
 gi|149947719|gb|ABR46247.1| DNA replication and repair protein RecF [Alkaliphilus
           metalliredigens QYMF]
          Length = 368

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 167/370 (45%), Gaps = 8/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +  FRNY  L+L    +  IFVG+N  GKTN+LEA+   + G+ FR +   ++
Sbjct: 1   MIIEGLKLINFRNYEQLQLQLHPKLNIFVGENAQGKTNVLEAVYLSAIGKSFRTSKDQEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             +     +    +V+ +    +I ++L        + +++N V +  + EL  +L I  
Sbjct: 61  IFVDKHQAY-VQVKVKRVVYENNIELRLNVD---KKKNIKVNQVPLLKLGELLGNLNIVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   +I      ERR+F+D  +  I P++   +  + ++++ RN+LL           
Sbjct: 117 FSPEDLKIIKEGPGERRKFIDGEISQIAPKYYYNLNQYNKILQQRNKLLKYHKGKKLDLE 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCA 242
               Q+A +G  + I R   I  ++ L     +K       +++     +  K   +   
Sbjct: 177 VWNEQLANIGASLIIYRRNFIKRIAILAKLMHRKITDGIETLEIEYKSSVLIKDHDTVDQ 236

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++  + K+L      +     TL+GPHR DL  +     +   +GS G+Q+  ++ + LA
Sbjct: 237 IRVGFLKELNQSADEERRRGVTLVGPHRDDLNFNINGLEVK-TYGSQGQQRTAVLSLKLA 295

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              LI    G  P+LLLD++ + LD  ++N L   +  + + +  T  +     ++ + A
Sbjct: 296 ELELIKGEVGEYPVLLLDDVMSELDMKRQNDLIYHLKHVQTLVTTTMLEPLNIKNVQDKA 355

Query: 363 KFMRISNHQA 372
              R+   + 
Sbjct: 356 -LFRVIKGEI 364


>gi|300719139|ref|YP_003743942.1| DNA replication and repair protein [Erwinia billingiae Eb661]
 gi|299064975|emb|CAX62095.1| DNA replication and repair protein [Erwinia billingiae Eb661]
          Length = 361

 Score =  316 bits (809), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 148/369 (40%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIENADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R+EG E    + +      D  VR   I+      V EL + L +  
Sbjct: 61  IRHEQDAF-VLHGRIEGAEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR ++D   F  +P       +  RLM+ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFTAWSNLRRLMKQRNAALRQ-VSRYQQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A++  I      +  P  KL+ +       +       
Sbjct: 176 AWDQELVPLAEQISRWRAAYSDAIAEDINATCA-QFLPEFKLTFSFQRGWDKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EY + L    + D     T  GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -EYGELLERQFERDRALTYTASGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++   G   + L+D+ ++ LDE +R  L   +    +Q+F++       FD  +E  K
Sbjct: 287 EFLTRQNGRRCLYLIDDFASELDETRRQLLASRLKATHAQVFVSAISAEHVFDMTDEKGK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFHVEQGKI 355


>gi|295691866|ref|YP_003600476.1| DNA replication and repair protein recf [Lactobacillus crispatus
           ST1]
 gi|295029972|emb|CBL49451.1| DNA replication and repair protein recF [Lactobacillus crispatus
           ST1]
          Length = 375

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 155/376 (41%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    +  FRN   L + FD+   IF+G N  GKTN+LEAI FL+  R  R  +  D+
Sbjct: 1   MYLDHFTVQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       F  + G    + + + L     +  + + IN V    + +    L    
Sbjct: 61  IGFGGE-----FTNLLGHVHKSQVELDLRVLITQKGKKVWINRVEQAKLSKYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D+    I+  +      + +++  +N  L +       D 
Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+A +  ++   R + +  LS    +     +    +LS+         Q+ 
Sbjct: 176 VFLDVLSDQLAGIAAEVVFRRFKFLKYLSHYASDAYAHISLGSEQLSIAYHPSVADIQAD 235

Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            + +E Y K L      +  +     T  GPHR D+      +   + + S G+Q+ + +
Sbjct: 236 DSTEEIYQKILASYARNKASEIRKGTTTSGPHRDDIEFKLDGQNAHL-YASQGQQRSIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD      
Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +   I + + 
Sbjct: 354 EIIKKPRVYHIQSGKI 369


>gi|59710618|ref|YP_203394.1| recombination protein F [Vibrio fischeri ES114]
 gi|75507126|sp|Q5E8Z0|RECF_VIBF1 RecName: Full=DNA replication and repair protein recF
 gi|59478719|gb|AAW84506.1| gap repair protein [Vibrio fischeri ES114]
          Length = 359

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 163/369 (44%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I++FRN  +  +   +     +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLSRLIINDFRNITTCDIQLSSGFNFVIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      F    R    E   ++ I +  + D +   ++I     + + +L K L +  
Sbjct: 61  IRNDCDELF-IHGRFTTPEQF-ELPIGINKQRDGTT-EVKIGGESGQKLAQLAKVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF ++P         +RL + RN LL          S
Sbjct: 118 IHPEGFELVTDGPKFRRAFIDWGVFHVEPAFYDAWSRVKRLTKQRNALLKTANSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  KI+  RV+ IN +S    +  Q    P   + L+ +     +       
Sbjct: 177 YWDLELAQLSEKIDQWRVDYINHISEATQQICQA-FLPEYDIKLSYYRGWDRETP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T+ GP+++DL +      +     S G+ K+++  + LA  
Sbjct: 231 --YAELLKKNFERDKQLGYTVGGPNKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L + +    +Q+F++  T + + D  ++ +K
Sbjct: 288 QHLTEATGKQCIYLIDDFASELDSHRRQLLAQYLKQTKAQVFISSITAEQIADMHDDESK 347

Query: 364 FMRISNHQA 372
              I + + 
Sbjct: 348 MFEIEHGKI 356


>gi|289422543|ref|ZP_06424386.1| DNA replication and repair protein RecF [Peptostreptococcus
           anaerobius 653-L]
 gi|289157115|gb|EFD05737.1| DNA replication and repair protein RecF [Peptostreptococcus
           anaerobius 653-L]
          Length = 371

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 176/374 (47%), Gaps = 11/374 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +RNY  L + F+    + +G NG GKTNI+E+++ ++ G+ FR +   ++
Sbjct: 1   MHINSLKLVNYRNYNDLSIDFNEHINLILGKNGQGKTNIVESLTLIAIGKSFRTSKDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    S +     +       +I  K+E    +  + +++N V ++ + +L  +L +  
Sbjct: 61  IKFDKDSLY-----IGCSFTRNNIDKKIEIAIAKDKKGIKVNGVSVKSIQDLLGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   ++      ERR F+D+ +  I PR+   +  + +++  RN+LL   Y D +  +
Sbjct: 116 FSPEDLKLIKDGPKERRSFIDKEISQIMPRYYSILTSYNKVLDERNKLLKSQYIDRNLLA 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFCA 242
                +A    +I + R + +  LS +  +  QK       +K+     ++        +
Sbjct: 176 VYSETLANYAAEIYLIRRDFVGKLSIISSDLHQKLTSDKEVLKIRYKSQIEVTDQDDIRS 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E+      +    D ++R T IGPHR D+++   D  + + +GS G+Q+   + + L+
Sbjct: 236 MREKIISAHEENIDHDMLNRNTRIGPHRDDIVIYLNDIDVRL-YGSQGQQRTASISLKLS 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ET 361
              LI    G  P+L+LD++ + LD++++  L   + DI  Q+F+T  D      L  + 
Sbjct: 295 EIELIKQEIGDYPVLILDDVFSELDQNRQKMLVEKLEDI--QMFVTTADPLHKLILGKDD 352

Query: 362 AKFMRISNHQALCI 375
                I   + + I
Sbjct: 353 YSVFNIEAGKVVEI 366


>gi|310825639|ref|YP_003957996.1| DNA replication and repair protein RecF [Eubacterium limosum
           KIST612]
 gi|308737373|gb|ADO35033.1| DNA replication and repair protein RecF [Eubacterium limosum
           KIST612]
          Length = 371

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 165/374 (44%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  +RNY    L F     +  G N  GKTN++E+I  LS G   +  +  D+
Sbjct: 1   MILTRLHLVHYRNYRDETLEFSPGINVICGQNAQGKTNLVESIHLLSRGYSHKTGTLMDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  FF     V+      D S  L  +     + + +N       D +   L    
Sbjct: 61  VGFDESGFF-----VQADIVKEDTSHTLSIKMQDKKKTVLLNGKKETRRDAVLGVLTTIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
             P   +I      +RRRF++  +    P +   + ++ ++   RN LL E  +DS+   
Sbjct: 116 FEPDDLKIVKEGPEKRRRFMNNEISGFKPNYPYILKNYAKIHNQRNALLKEIKYDSTLAL 175

Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
              S + Q+ + G  +   R++ +  L+    E  ++ +    +L L    +   + Q F
Sbjct: 176 TLDSWDEQLVKYGSMLMRYRIDYLRRLNVKARELHRELSGGQEELVLFYQNNVLENPQEF 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L+  + +KL   R+ D     T  GPH  D+++    K     +GS G+Q+   + + 
Sbjct: 236 SDLERIFREKLQASRQEDIARGSTTYGPHVDDIMIHLNGKDAK-KYGSQGQQRTAAISLK 294

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   +   +TG  P++LLD+I + LD+ ++  +  I+    +Q F+T TD S  +  +E
Sbjct: 295 LSQIEIYRESTGDYPVVLLDDILSELDDRRQRNILSILGK--TQAFITCTDPSFIEHYSE 352

Query: 361 -TAKFMRISNHQAL 373
             +K ++I + + L
Sbjct: 353 LPSKILKIEDGRQL 366


>gi|145597327|ref|YP_001161402.1| recombination protein F [Yersinia pestis Pestoides F]
 gi|145209023|gb|ABP38430.1| DNA replication and repair protein RecF [Yersinia pestis Pestoides
           F]
          Length = 425

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR      V
Sbjct: 67  MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 126

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  A + +    + D  VR   I+      V EL + L +  
Sbjct: 127 IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 182

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 183 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 241

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 242 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 294

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 295 -DYGELLARQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 352

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 353 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 412

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 413 MFRVEHGKI 421


>gi|126730158|ref|ZP_01745970.1| recombination protein F [Sagittula stellata E-37]
 gi|126709538|gb|EBA08592.1| recombination protein F [Sagittula stellata E-37]
          Length = 364

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 128/371 (34%), Positives = 203/371 (54%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++  + +  D +     G NG GKTN++EA+S  SPGRG RRAS  D+
Sbjct: 1   MYLSHLTLSHFRSHKRVAIDVDLRPVAIWGPNGSGKTNLIEAVSLFSPGRGLRRASAQDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +     +EG +G  +I     T +    R ++I+D     V  L +  R  W
Sbjct: 61  ARRPESLGWKITGALEGPQGAHEI---AFTSEGGGARAVRIDDKPASQVA-LGRIARAVW 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+P+MDR++   +  RRRFLDR+  +  P H +  +D+E+ MR RNRLL +   D  W +
Sbjct: 117 LIPAMDRLWIEGAEGRRRFLDRIALSFFPDHAQAALDYEKAMRERNRLLKDMVRDPHWYT 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E QMAE G  +++ R+  ++ ++    +   +  FP   L L        D       
Sbjct: 177 ALERQMAEAGAALHVNRLAALDRIAE--AQDGAETRFPAATLDL-----VHGDGEMPGSA 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            E    L + RK D  + RTL+GPHR+DLI  + +K +  A  STGEQK +L+ + L++A
Sbjct: 230 AELRIALEESRKRDLAAGRTLVGPHRADLIGTFAEKGVLAADCSTGEQKALLISLILSNA 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  PILLLDE++AHLD  +R ALF  +  +G+Q +MTGT   +F  L + A+ 
Sbjct: 290 RALAADEGHPPILLLDEVAAHLDAGRRAALFDEICALGAQAWMTGTGPELFAELGDRAQA 349

Query: 365 MRISNHQALCI 375
           + +S+  +  +
Sbjct: 350 LEVSDGPSGSV 360


>gi|188535560|ref|YP_001909357.1| recombination protein F [Erwinia tasmaniensis Et1/99]
 gi|226737797|sp|B2VCE1|RECF_ERWT9 RecName: Full=DNA replication and repair protein recF
 gi|188030602|emb|CAO98497.1| DNA replication and repair protein RecF [Erwinia tasmaniensis
           Et1/99]
          Length = 361

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R+   E    + +      D  VR   I+      V EL + L +  
Sbjct: 61  IRHDQDAF-VLHGRIATAEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR ++D   F  +P       +  RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++A L  +I+  R     A+++ I      +  P  +LS +       +       
Sbjct: 176 AWDQELAPLAEQISQWRAAYSEAIAADISATCA-QFLPEFQLSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T  GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 229 -HYAELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++   G   + L+D+ ++ LDE +R+ L   +    +Q+F++       FD  +E  K
Sbjct: 287 EFLTRQNGQRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMTDEKGK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFHVEQGKI 355


>gi|108810131|ref|YP_654047.1| recombination protein F [Yersinia pestis Antiqua]
 gi|108814113|ref|YP_649880.1| recombination protein F [Yersinia pestis Nepal516]
 gi|167401621|ref|ZP_02307115.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|51591507|emb|CAH23179.1| DNA metabolism protein [Yersinia pseudotuberculosis IP 32953]
 gi|108777761|gb|ABG20280.1| DNA replication and repair protein RecF [Yersinia pestis Nepal516]
 gi|108782044|gb|ABG16102.1| DNA replication and repair protein RecF [Yersinia pestis Antiqua]
 gi|167049003|gb|EDR60411.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Antiqua str. UG05-0454]
          Length = 427

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR      V
Sbjct: 67  MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 126

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  A + +    + D  VR   I+      V EL + L +  
Sbjct: 127 IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 182

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 183 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 241

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 242 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 294

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 295 -DYGELLARQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 352

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 353 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 412

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 413 MFRVEHGKI 421


>gi|83309737|ref|YP_420001.1| recombination protein F [Magnetospirillum magneticum AMB-1]
 gi|82944578|dbj|BAE49442.1| Recombinational DNA repair ATPase [Magnetospirillum magneticum
           AMB-1]
          Length = 394

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 143/378 (37%), Positives = 206/378 (54%), Gaps = 14/378 (3%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R  ++ L +++FR Y +LRL  D++  +  G NG GKTNILEA+SFL PGRG RRA  AD
Sbjct: 14  RPAVRRLTLADFRCYRTLRLETDSRPVVLTGANGAGKTNILEALSFLVPGRGLRRAGAAD 73

Query: 64  VTRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           +TR G  + S ++  A ++G  G  +I    E   +R  R ++I+    +  D L   + 
Sbjct: 74  ITRHGLAAGSPWAVAATLDGPAGRVEIGTGREAGHER--RSVRIDGKPAKPGD-LAGLVS 130

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---- 177
             WL P+MDR+F   +  RRRFLDR+VF + P H      +E  MR R RLL        
Sbjct: 131 ALWLTPAMDRLFIEGASGRRRFLDRLVFGLVPGHGAEAGAYEHAMRERTRLLRAARDGGP 190

Query: 178 -FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
             D +W +++E  MA  G ++ +ARVE I  L       +    FP   L++ G ++G  
Sbjct: 191 RVDPAWMAALEEGMARHGTRVALARVESIRRLDEACRAGL--GPFPAAGLAVEGEIEGWL 248

Query: 237 D--QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
               S    +E +   L   R  D  +    +GPHRSDL+V +  K +     STGEQK 
Sbjct: 249 AGGLSPDEAEERFRGALRVARARDEAAGAATMGPHRSDLMVRHVPKDLPAGQCSTGEQKA 308

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           VLV I LA  R+   + G AP+LLLDE++AHLDE +R ALF  +  + +Q +MTGTD  +
Sbjct: 309 VLVSIVLAQGRVQDQSGGRAPLLLLDEVAAHLDEVRRAALFDELCALKAQSWMTGTDAML 368

Query: 355 FDSLNETAKFMRISNHQA 372
           F    E A+F R+++   
Sbjct: 369 FAGFGERAQFFRVTDATV 386


>gi|227328543|ref|ZP_03832567.1| recombination protein F [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 361

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P F     R++G E    + +    + D  VR   I+      V EL + L I  
Sbjct: 61  IRHDQPEF-VLHGRIDGTETERSVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL+R RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFAAWSNMKRLLRQRNAALRQ-VSHYGQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R +   A+++ I      +  P   LS +       +       
Sbjct: 176 AWDQELVPLAERISEWRAQYSAAIANDIAATC-TQFLPEFSLSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D M   T +GPH++D  +     A+     S G+ K+++  + LA  
Sbjct: 229 -EYAELLERQFERDRMLGYTALGPHKADFRIRASGVAVEDML-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
             ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++        D + E  K
Sbjct: 287 EFLTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMIGEKGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|227877544|ref|ZP_03995604.1| recombination protein F [Lactobacillus crispatus JV-V01]
 gi|256843828|ref|ZP_05549315.1| recombination protein F [Lactobacillus crispatus 125-2-CHN]
 gi|256849617|ref|ZP_05555049.1| recombination protein F [Lactobacillus crispatus MV-1A-US]
 gi|293380894|ref|ZP_06626930.1| DNA replication and repair protein RecF [Lactobacillus crispatus
           214-1]
 gi|227862843|gb|EEJ70302.1| recombination protein F [Lactobacillus crispatus JV-V01]
 gi|256613733|gb|EEU18935.1| recombination protein F [Lactobacillus crispatus 125-2-CHN]
 gi|256713733|gb|EEU28722.1| recombination protein F [Lactobacillus crispatus MV-1A-US]
 gi|290922567|gb|EFD99533.1| DNA replication and repair protein RecF [Lactobacillus crispatus
           214-1]
          Length = 375

 Score =  315 bits (807), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 155/376 (41%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    +  FRN   L + FD+   IF+G N  GKTN+LEAI FL+  R  R  +  D+
Sbjct: 1   MYLDHFTVQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       F  + G    + + + L     +  + + IN V    + +    L    
Sbjct: 61  IGFGGE-----FTNLLGHVHKSQVDLDLRVLITQKGKKVWINRVEQAKLSKYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D+    I+  +      + +++  +N  L +       D 
Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+A +  ++   R + +  LS    +     +    +LS+         Q+ 
Sbjct: 176 VFLDVLSDQLAGIAAEVVFRRFKFLKYLSHYASDAYAHISLGSEQLSIAYHPSVADIQAD 235

Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            + +E Y K L      +  +     T  GPHR D+      +   + + S G+Q+ + +
Sbjct: 236 DSTEEIYQKILASYARNKASEIRKGTTTSGPHRDDIEFKLDGQNAHL-YASQGQQRSIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD      
Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +   I + + 
Sbjct: 354 EIIKKPRVYHIQSGKI 369


>gi|28896787|ref|NP_796392.1| recombination protein F [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839066|ref|ZP_01991733.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           AQ3810]
 gi|260363486|ref|ZP_05776319.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           K5030]
 gi|260876545|ref|ZP_05888900.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           AN-5034]
 gi|260897306|ref|ZP_05905802.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           Peru-466]
 gi|260901414|ref|ZP_05909809.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           AQ4037]
 gi|32129958|sp|Q87TQ5|RECF_VIBPA RecName: Full=DNA replication and repair protein recF
 gi|28804995|dbj|BAC58276.1| RecF protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747449|gb|EDM58403.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           AQ3810]
 gi|308087832|gb|EFO37527.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           Peru-466]
 gi|308090410|gb|EFO40105.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           AN-5034]
 gi|308107203|gb|EFO44743.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           AQ4037]
 gi|308113567|gb|EFO51107.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           K5030]
          Length = 359

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 153/369 (41%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V
Sbjct: 1   MPLSRLIIQQFRNIKACDIQLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +P        F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTASSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R   I  +   + E + +   P  ++ L  +     D       
Sbjct: 177 YWDQEMARLAENISQWRSLYIEQM-KTVAETICQTFLPEFEIQLKYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YQEILEKNFERDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L++  K
Sbjct: 288 QHLTAMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITENQIADMLDDNGK 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 LFHVEHGRI 356


>gi|310765872|gb|ADP10822.1| DNA replication and repair protein recF [Erwinia sp. Ejp617]
          Length = 397

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 147/369 (39%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 37  MALTRLLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 96

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R+   E      +      D  VR   I+      V EL + L +  
Sbjct: 97  IRHDQDAF-VLHGRIRAAEREISAGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 152

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR ++D   F  +P       +  RL++ RN  L +         
Sbjct: 153 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIR 211

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++A L  +I+  R     A+++ I      +  P  +LS +       +       
Sbjct: 212 AWDQELAPLAEQISQWRAAYSKAIAADINATCA-QFLPEFQLSFSFQRGWDKES------ 264

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D     T  GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 265 -DYAGLLERNFERDRAFTYTASGPHKADFRIRAQGTPVE-DLLSRGQLKLLMCALRLAQG 322

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++   G   + L+D+ ++ LDE +R+ L   +    +Q+F++       FD  +E  K
Sbjct: 323 EFLTRQNGRRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMTDEKGK 382

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 383 MFHVEQGKI 391


>gi|163849460|ref|YP_001637503.1| DNA replication and repair protein RecF [Methylobacterium
           extorquens PA1]
 gi|254558656|ref|YP_003065751.1| RecF protein [Methylobacterium extorquens DM4]
 gi|163661065|gb|ABY28432.1| DNA replication and repair protein RecF [Methylobacterium
           extorquens PA1]
 gi|254265934|emb|CAX21683.1| putative RecF protein [Methylobacterium extorquens DM4]
          Length = 384

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 142/377 (37%), Positives = 203/377 (53%), Gaps = 4/377 (1%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +    ++  L   +FRN+  L L    +    VG+NG GKTNILEA+S   PGRG RRA 
Sbjct: 4   LPGGPRLTRLIARDFRNHVDLDLATTRRFVALVGENGAGKTNILEAVSLFCPGRGLRRAD 63

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRVVDELNK 118
            A + R+G P  F+  A +E  E         E    D R  R  +I+          ++
Sbjct: 64  LATMARVGGPGGFAVSATLEASEAEHRFGSGYEPPGYDGRGTRVCRIDGANAPSPVAFSE 123

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            LRI WL P  D +F G + +RRRFLDR+V A+D  H  R+   ER +R RNRLL E   
Sbjct: 124 FLRIVWLTPDFDGLFRGAAGDRRRFLDRLVLAVDAGHGARVSAMERALRSRNRLLDERPD 183

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFD 237
           D  W  ++E ++AELGV + +AR E +  L  LI E       FP   L L G LD    
Sbjct: 184 DGRWLDAVEREVAELGVAVALARRETVERLDRLIAETRDDAAPFPWASLRLEGDLDDLVA 243

Query: 238 Q-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                  ++ + + L  GR  D  + RTLIGP  +DL+V +  K +  A  STGEQK +L
Sbjct: 244 VWPALEAEDRFRRALMQGRHRDRAAGRTLIGPQTTDLVVRHGPKDVPAATASTGEQKALL 303

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           +G+ LAHARL+   +G AP++LLDE++AHLD  +R  LF  +  +  Q++MTG D ++F 
Sbjct: 304 IGLVLAHARLVRAMSGLAPLILLDEVAAHLDPRRRGGLFDALEALEGQVWMTGADPALFA 363

Query: 357 SLNETAKFMRISNHQAL 373
            L   A  + +++ + +
Sbjct: 364 ELEGRADLIGVADGRLV 380


>gi|149191878|ref|ZP_01870112.1| recombination protein F [Vibrio shilonii AK1]
 gi|148834270|gb|EDL51273.1| recombination protein F [Vibrio shilonii AK1]
          Length = 360

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 151/369 (40%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN  +  +         +G NG GKT++LEAI  L  GR F+ +    V
Sbjct: 1   MPLTRLIVQQFRNIKACDIELSTGFNFIIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    + I  +      V+   I     + + +L K L +  
Sbjct: 61  IQNDCQELFVHGRFLNSDQFEIPVGINKQRDGSTEVK---IGGQSGQKLAQLAKVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +P        F+RL + RN LL          S
Sbjct: 118 IHPEGFELLTDGPKFRRAFIDWGVFHSEPGFHEAWGRFKRLSKQRNALLKTATSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             +  +A+L  +I+  R   +  +  L  E  Q    P  ++ L  +   + D       
Sbjct: 177 YWDRDLAQLAEQIDDWRRCYVEQMQPLAEEMCQS-FLPEFEIKLGYYRGWEKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T  GP+++DL +   +  +     S G+ K+++  + LA  
Sbjct: 231 --YAELLERNFERDQSLGYTFSGPNKADLRIKVNNTPVEDVL-SRGQLKLMMCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +    +Q+F++  T   V D ++E  K
Sbjct: 288 QHLAELTGKQCIYLIDDFASELDSLRRKRLADYLKQTNAQVFVSSITQSQVADMIDENGK 347

Query: 364 FMRISNHQA 372
              + +   
Sbjct: 348 MFHVEHGTI 356


>gi|309795751|ref|ZP_07690166.1| recombination protein F [Escherichia coli MS 145-7]
 gi|308120630|gb|EFO57892.1| recombination protein F [Escherichia coli MS 145-7]
          Length = 357

 Score =  314 bits (806), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHDQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|298290589|ref|YP_003692528.1| DNA replication and repair protein RecF [Starkeya novella DSM 506]
 gi|296927100|gb|ADH87909.1| DNA replication and repair protein RecF [Starkeya novella DSM 506]
          Length = 385

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 138/368 (37%), Positives = 202/368 (54%), Gaps = 7/368 (1%)

Query: 14  EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG----S 69
           +FR+Y    +       + VG NG GKTN+LEAIS L+PGRG RRAS       G     
Sbjct: 13  DFRSYHHADIRAGDGPVVLVGPNGAGKTNLLEAISLLAPGRGLRRASLDQFAARGPEGTQ 72

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWLVPS 128
            + ++  A VEG  G   +   LE     +  R  +I+   +        H+R+ WL P 
Sbjct: 73  AAGWAVSAVVEGAYGEVTLGTGLEADAGEARSRRCRIDGEPVGSAAAFADHVRVVWLTPD 132

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
           MD +F+G   ERRRFLDR+V A+D  H  R+   ER +R RNRLL E   D  +  ++E 
Sbjct: 133 MDGLFTGPPSERRRFLDRLVLAVDAEHGARVNALERALRSRNRLLEEPSTDPRYLDAVEH 192

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCAL-KEE 246
           ++A L V +  AR+E +  L++ I +     + FP   ++L G ++    +    + +++
Sbjct: 193 ELAALAVAVAAARLETVRRLAANIAQSRDDTSLFPWASVALEGEVERALAREPATVVEDQ 252

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           Y   L   R  D  + RTL GPH +DL+V +  KAI  A GSTGEQK +L+G+ LAHARL
Sbjct: 253 YRLALRASRPRDRAAGRTLEGPHLTDLLVGHGPKAIPAAQGSTGEQKALLIGLALAHARL 312

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +    G AP++LLD++ A+LD  +R ALF  +  +GSQ++MTG D S F +L   A+   
Sbjct: 313 VGEMAGMAPVMLLDDVVAYLDPARRAALFEALEALGSQVWMTGADPSAFVALGARAERFE 372

Query: 367 ISNHQALC 374
           +   Q L 
Sbjct: 373 VRPGQVLS 380


>gi|209693645|ref|YP_002261573.1| recombination protein F [Aliivibrio salmonicida LFI1238]
 gi|226737766|sp|B6EP48|RECF_ALISL RecName: Full=DNA replication and repair protein recF
 gi|208007596|emb|CAQ77696.1| DNA replication and repair protein RecF [Aliivibrio salmonicida
           LFI1238]
          Length = 359

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 162/369 (43%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I++FRN  +  +         +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLSRLIINDFRNIETCDIQLSTGFNFVIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      F    R    E   ++ I +  + D +   ++I     + + +L K L +  
Sbjct: 61  IRNSCDELF-IHGRFTTPEQF-ELPIGINKQRDGTT-EVKIGGESGQKLAQLAKVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF ++P         +RL + RN LL          S
Sbjct: 118 IHPEGFELVTDGPKFRRAFIDWGVFHVEPAFYEAWSRVKRLTKQRNALLKTAQSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  KI+  RV+ IN +S    +  Q    P   + L+ +   + +       
Sbjct: 177 YWDLELANLAEKIDQWRVDYINHISEATQQICQA-FLPEYDIKLSYYRGWERETP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T+ GP+++DL +      +     S G+ K+++  + LA  
Sbjct: 231 --YAELLKRNFERDKQLGYTVGGPNKADLRIKVAGTPVEDVL-SRGQLKLMVCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L + +    +Q+F++  T + + D  +E +K
Sbjct: 288 QHLTEATGKQCIYLIDDFASELDSHRRQLLAQYLKQTKAQVFISSITAEQIADMHDEESK 347

Query: 364 FMRISNHQA 372
              I + + 
Sbjct: 348 MFEIEHGKI 356


>gi|259910293|ref|YP_002650649.1| recombination protein F [Erwinia pyrifoliae Ep1/96]
 gi|224965915|emb|CAX57448.1| DNA replication and repair protein RecF [Erwinia pyrifoliae Ep1/96]
          Length = 361

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 149/369 (40%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIENADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R+ G E    + +      D  VR   I+      V EL + L +  
Sbjct: 61  IRHEQDAF-VLHGRIAGAERETSVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR ++D   F  +P       +  RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFHAWSNLRRLLKQRNAALRQ-VSRYQQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++A L  +I+  R     A+++ I      +  P  +LS +       +       
Sbjct: 176 AWDQELAPLAEQISQWRAAYSRAIAADINATCA-QFLPEFQLSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D     T  GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 229 -DYAGLLERNFERDRALTYTASGPHKADFRIRAQGTPVE-DLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++   G   + L+D+ ++ LDE +R+ L   +    +Q+F++       FD  +E  K
Sbjct: 287 EFLTRQNGRRCLYLIDDFASELDETRRHLLAARLKATQAQVFVSAIAAEHVFDMADEKGK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFHVEQGKI 355


>gi|301644372|ref|ZP_07244373.1| recombination protein F [Escherichia coli MS 146-1]
 gi|301077313|gb|EFK92119.1| recombination protein F [Escherichia coli MS 146-1]
          Length = 357

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTCYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|221640843|ref|YP_002527105.1| recombination protein F [Rhodobacter sphaeroides KD131]
 gi|221161624|gb|ACM02604.1| DNA replication and repair protein recF [Rhodobacter sphaeroides
           KD131]
          Length = 363

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 140/370 (37%), Positives = 203/370 (54%), Gaps = 17/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++ + R+ FD +   FVG NG GKTN+LEAIS LSPGRG RRA+  ++
Sbjct: 4   LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNLLEAISLLSPGRGLRRAAADEI 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A V G+    +I    E    R VR     D        L + LRI W
Sbjct: 64  ARRPEALGWKVAAAVTGLHSGHEIETWAEGGGARQVRV----DGKAATQVMLGRLLRIVW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR+++  +  RRRFLDR+  +  P H   ++D+E+ MR RNRLL E   D+ W  
Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E +MAE    I   R E +  L  +  +   +  FP   LS+                
Sbjct: 180 ALEGRMAEAARAIRAHREEAVARL--MAAQGAAETAFPRAMLSVAS-----------DDP 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+      +GR+ D  + RTL+GPHR+DL   Y  K +  A  STGEQK +L+ + LA+A
Sbjct: 227 EDLGAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G AP+LLLDE++AHLDE +R ALF  +  +G+Q FMTGT   +F +L + A+ 
Sbjct: 287 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQR 346

Query: 365 MRISNHQALC 374
           + ++  Q L 
Sbjct: 347 IEVTEAQGLS 356


>gi|323465561|gb|ADX69248.1| DNA replication and repair protein recF [Lactobacillus helveticus
           H10]
          Length = 375

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 154/376 (40%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    +  FRN   L + FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++
Sbjct: 1   MYLDHFVVQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       +  + G    + + + L     +  + + IN V    + +    L    
Sbjct: 61  IGFGGE-----YTNLLGHVRKSQVDLTLRVLITQKGKKVWINRVEQAKLSKYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D+    I+  +      + +++  +N  L +       D 
Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+A +  ++   R + +  LS    +     +    KL++         ++ 
Sbjct: 176 VFLDVLSDQLAGIAAEVIFRRFKFLRYLSHYASDAYAHISLGGEKLAIAYHPSVSTIEAD 235

Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
             ++E Y K L      + ++     T  GPHR D+      K   + + S G+Q+ + +
Sbjct: 236 DTVEEIYQKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T T       
Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYI-HGKTQTFITTTYLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +   I + + 
Sbjct: 354 EIIKKPRVYHIQSGKI 369


>gi|290959001|ref|YP_003490183.1| DNA replication protein [Streptomyces scabiei 87.22]
 gi|260648527|emb|CBG71638.1| DNA replication protein [Streptomyces scabiei 87.22]
          Length = 374

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 99/380 (26%), Positives = 167/380 (43%), Gaps = 21/380 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    ++ R        +R  D L   +R   
Sbjct: 61  VRMGAD---RAVVRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233
              D S     +  +A +G  +   R++++ A+  L  +  ++       + L       
Sbjct: 177 RTMDLSTLDVWDQHLARVGADLLAQRLDLVAAIQPLADKAYEQLAPGGGPVGLEYRPSSP 236

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           G    +   L E+    L + RK +     TL+GPHR D+ +    +     + S GE  
Sbjct: 237 GLVGHAREELYEQLTAALTESRKQEIERGVTLVGPHRDDVTLKL-GQLPAKGYASHGESW 295

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDK 352
              + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   D 
Sbjct: 296 SYALALRLASYDLLRAE-GNEPVLILDDVFAELDSRRRERLAELVA-PGEQVLVTAAVDD 353

Query: 353 SVFDSLNETAKFMRISNHQA 372
            V D L  T     +S+   
Sbjct: 354 DVPDVL--TGARYVVSDGTV 371


>gi|170767070|ref|ZP_02901523.1| DNA replication and repair protein RecF [Escherichia albertii
           TW07627]
 gi|170124508|gb|EDS93439.1| DNA replication and repair protein RecF [Escherichia albertii
           TW07627]
          Length = 357

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQVGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|312174327|emb|CBX82580.1| DNA replication and repair protein recF [Erwinia amylovora ATCC
           BAA-2158]
          Length = 361

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 146/369 (39%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEDADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R+   E    + +      D  VR   I+      V EL + L +  
Sbjct: 61  IRHDRDAF-VLHGRIAATEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR ++D   F  +P       +  RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFNAWSNLRRLLKQRNAALRQ-VSRYQQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++A L  +I+  R     A+++ I      +  P  +LS +       D       
Sbjct: 176 AWDQELAPLAEQISQWRAAYSEAIAADINATCA-QFLPEFQLSFSFQRGWDKDSG----- 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T  GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 230 --YAELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++   G   + L+D+ ++ LDE +R  L   +    +Q+F++       FD  +E  K
Sbjct: 287 EFLTRQNGRRCLYLIDDFASELDETRRQLLAAHLKATQAQVFVSAIAAEHVFDMADEKGK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFHVEQGKI 355


>gi|332345691|gb|AEE59025.1| DNA replication and repair protein RecF [Escherichia coli UMNK88]
          Length = 357

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTHYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|218702549|ref|YP_002410178.1| recombination protein F [Escherichia coli IAI39]
 gi|226737791|sp|B7NR02|RECF_ECO7I RecName: Full=DNA replication and repair protein recF
 gi|218372535|emb|CAR20410.1| gap repair protein [Escherichia coli IAI39]
          Length = 357

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFTLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|15804294|ref|NP_290333.1| recombination protein F [Escherichia coli O157:H7 EDL933]
 gi|15833889|ref|NP_312662.1| recombination protein F [Escherichia coli O157:H7 str. Sakai]
 gi|16131568|ref|NP_418155.1| gap repair protein [Escherichia coli str. K-12 substr. MG1655]
 gi|26250441|ref|NP_756481.1| recombination protein F [Escherichia coli CFT073]
 gi|74314014|ref|YP_312433.1| recombination protein F [Shigella sonnei Ss046]
 gi|89110313|ref|AP_004093.1| gap repair protein [Escherichia coli str. K-12 substr. W3110]
 gi|91213222|ref|YP_543208.1| recombination protein F [Escherichia coli UTI89]
 gi|117625976|ref|YP_859299.1| recombination protein F [Escherichia coli APEC O1]
 gi|157155989|ref|YP_001465185.1| recombination protein F [Escherichia coli E24377A]
 gi|157163180|ref|YP_001460498.1| recombination protein F [Escherichia coli HS]
 gi|168748584|ref|ZP_02773606.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4113]
 gi|168753589|ref|ZP_02778596.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4401]
 gi|168759886|ref|ZP_02784893.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4501]
 gi|168766187|ref|ZP_02791194.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4486]
 gi|168772265|ref|ZP_02797272.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4196]
 gi|168779922|ref|ZP_02804929.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4076]
 gi|168798735|ref|ZP_02823742.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC508]
 gi|170018064|ref|YP_001723018.1| recombination protein F [Escherichia coli ATCC 8739]
 gi|170083202|ref|YP_001732522.1| gap repair protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170684195|ref|YP_001746028.1| recombination protein F [Escherichia coli SMS-3-5]
 gi|191165795|ref|ZP_03027633.1| DNA replication and repair protein RecF [Escherichia coli B7A]
 gi|193069194|ref|ZP_03050151.1| DNA replication and repair protein RecF [Escherichia coli E110019]
 gi|194435781|ref|ZP_03067884.1| DNA replication and repair protein RecF [Escherichia coli 101-1]
 gi|195936321|ref|ZP_03081703.1| recombination protein F [Escherichia coli O157:H7 str. EC4024]
 gi|208808901|ref|ZP_03251238.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4206]
 gi|208814025|ref|ZP_03255354.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4045]
 gi|208819308|ref|ZP_03259628.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4042]
 gi|209397495|ref|YP_002273226.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4115]
 gi|215489040|ref|YP_002331471.1| recombination protein F [Escherichia coli O127:H6 str. E2348/69]
 gi|217324896|ref|ZP_03440980.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. TW14588]
 gi|218556265|ref|YP_002389179.1| recombination protein F [Escherichia coli IAI1]
 gi|218560775|ref|YP_002393688.1| recombination protein F [Escherichia coli S88]
 gi|218691988|ref|YP_002400200.1| recombination protein F [Escherichia coli ED1a]
 gi|218697422|ref|YP_002405089.1| recombination protein F [Escherichia coli 55989]
 gi|218707346|ref|YP_002414865.1| recombination protein F [Escherichia coli UMN026]
 gi|227883921|ref|ZP_04001726.1| recombination protein F [Escherichia coli 83972]
 gi|237703500|ref|ZP_04533981.1| recombination protein F [Escherichia sp. 3_2_53FAA]
 gi|238902790|ref|YP_002928586.1| gap repair protein [Escherichia coli BW2952]
 gi|253771438|ref|YP_003034269.1| recombination protein F [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254038917|ref|ZP_04872969.1| ssDNA and dsDNA binding protein [Escherichia sp. 1_1_43]
 gi|254163651|ref|YP_003046759.1| recombination protein F [Escherichia coli B str. REL606]
 gi|254795703|ref|YP_003080540.1| recombination protein F [Escherichia coli O157:H7 str. TW14359]
 gi|256025569|ref|ZP_05439434.1| recombination protein F [Escherichia sp. 4_1_40B]
 gi|260857889|ref|YP_003231780.1| gap repair protein RecF [Escherichia coli O26:H11 str. 11368]
 gi|260870431|ref|YP_003236833.1| gap repair protein RecF [Escherichia coli O111:H- str. 11128]
 gi|261225853|ref|ZP_05940134.1| gap repair protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258898|ref|ZP_05951431.1| gap repair protein RecF [Escherichia coli O157:H7 str. FRIK966]
 gi|291285119|ref|YP_003501937.1| DNA replication and repair protein recF [Escherichia coli O55:H7
           str. CB9615]
 gi|293407340|ref|ZP_06651262.1| DNA replication and repair protein recF [Escherichia coli FVEC1412]
 gi|293413154|ref|ZP_06655820.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417173|ref|ZP_06659800.1| DNA replication and repair protein recF [Escherichia coli B185]
 gi|293464024|ref|ZP_06664438.1| DNA replication and repair protein recF [Escherichia coli B088]
 gi|297518855|ref|ZP_06937241.1| recombination protein F [Escherichia coli OP50]
 gi|298383081|ref|ZP_06992676.1| DNA replication and repair protein recF [Escherichia coli FVEC1302]
 gi|300815053|ref|ZP_07095278.1| recombination protein F [Escherichia coli MS 107-1]
 gi|300824315|ref|ZP_07104431.1| recombination protein F [Escherichia coli MS 119-7]
 gi|300896029|ref|ZP_07114590.1| recombination protein F [Escherichia coli MS 198-1]
 gi|300903025|ref|ZP_07120967.1| recombination protein F [Escherichia coli MS 84-1]
 gi|300917470|ref|ZP_07134130.1| recombination protein F [Escherichia coli MS 115-1]
 gi|300925524|ref|ZP_07141399.1| recombination protein F [Escherichia coli MS 182-1]
 gi|300932331|ref|ZP_07147599.1| recombination protein F [Escherichia coli MS 187-1]
 gi|300940885|ref|ZP_07155412.1| recombination protein F [Escherichia coli MS 21-1]
 gi|300947539|ref|ZP_07161716.1| recombination protein F [Escherichia coli MS 116-1]
 gi|300956294|ref|ZP_07168596.1| recombination protein F [Escherichia coli MS 175-1]
 gi|300984542|ref|ZP_07177032.1| recombination protein F [Escherichia coli MS 45-1]
 gi|301020911|ref|ZP_07184966.1| recombination protein F [Escherichia coli MS 69-1]
 gi|301028493|ref|ZP_07191733.1| recombination protein F [Escherichia coli MS 196-1]
 gi|301047518|ref|ZP_07194594.1| recombination protein F [Escherichia coli MS 185-1]
 gi|301305954|ref|ZP_07212036.1| recombination protein F [Escherichia coli MS 124-1]
 gi|301325008|ref|ZP_07218558.1| recombination protein F [Escherichia coli MS 78-1]
 gi|306815947|ref|ZP_07450085.1| recombination protein F [Escherichia coli NC101]
 gi|307140400|ref|ZP_07499756.1| recombination protein F [Escherichia coli H736]
 gi|307313231|ref|ZP_07592856.1| DNA replication and repair protein RecF [Escherichia coli W]
 gi|312972008|ref|ZP_07786182.1| DNA replication and repair protein recF [Escherichia coli 1827-70]
 gi|331644424|ref|ZP_08345553.1| DNA replication and repair protein RecF [Escherichia coli H736]
 gi|331649526|ref|ZP_08350612.1| DNA replication and repair protein RecF [Escherichia coli M605]
 gi|331655360|ref|ZP_08356359.1| DNA replication and repair protein RecF [Escherichia coli M718]
 gi|331660042|ref|ZP_08360980.1| DNA replication and repair protein RecF [Escherichia coli TA206]
 gi|331665350|ref|ZP_08366251.1| DNA replication and repair protein RecF [Escherichia coli TA143]
 gi|331675190|ref|ZP_08375943.1| DNA replication and repair protein RecF [Escherichia coli TA280]
 gi|331679798|ref|ZP_08380468.1| DNA replication and repair protein RecF [Escherichia coli H591]
 gi|331685424|ref|ZP_08386010.1| DNA replication and repair protein RecF [Escherichia coli H299]
 gi|67471979|sp|P0A7H0|RECF_ECOLI RecName: Full=DNA replication and repair protein recF
 gi|67471980|sp|P0A7H1|RECF_ECOL6 RecName: Full=DNA replication and repair protein recF
 gi|67471981|sp|P0A7H2|RECF_ECO57 RecName: Full=DNA replication and repair protein recF
 gi|97180964|sp|Q3YWB4|RECF_SHISS RecName: Full=DNA replication and repair protein recF
 gi|122421840|sp|Q1R4N7|RECF_ECOUT RecName: Full=DNA replication and repair protein recF
 gi|166220709|sp|A1AHN5|RECF_ECOK1 RecName: Full=DNA replication and repair protein recF
 gi|166918721|sp|A7ZTQ6|RECF_ECO24 RecName: Full=DNA replication and repair protein recF
 gi|166918722|sp|A8A6G1|RECF_ECOHS RecName: Full=DNA replication and repair protein recF
 gi|189039623|sp|B1IYP4|RECF_ECOLC RecName: Full=DNA replication and repair protein recF
 gi|226737789|sp|B7MGC1|RECF_ECO45 RecName: Full=DNA replication and repair protein recF
 gi|226737790|sp|B5YXA2|RECF_ECO5E RecName: Full=DNA replication and repair protein recF
 gi|226737792|sp|B7M4I9|RECF_ECO8A RecName: Full=DNA replication and repair protein recF
 gi|226737793|sp|B1X9S9|RECF_ECODH RecName: Full=DNA replication and repair protein recF
 gi|226737794|sp|B7NF17|RECF_ECOLU RecName: Full=DNA replication and repair protein recF
 gi|226737796|sp|B1LL25|RECF_ECOSM RecName: Full=DNA replication and repair protein recF
 gi|254790475|sp|B7UMG7|RECF_ECO27 RecName: Full=DNA replication and repair protein recF
 gi|254790476|sp|B7L842|RECF_ECO55 RecName: Full=DNA replication and repair protein recF
 gi|254790477|sp|B7N204|RECF_ECO81 RecName: Full=DNA replication and repair protein recF
 gi|259563362|sp|C4ZYX7|RECF_ECOBW RecName: Full=DNA replication and repair protein recF
 gi|12518539|gb|AAG58897.1|AE005601_3 ssDNA and dsDNA binding, ATP binding [Escherichia coli O157:H7 str.
           EDL933]
 gi|26110871|gb|AAN83055.1|AE016769_170 DNA replication and repair protein recF [Escherichia coli CFT073]
 gi|41645|emb|CAA27870.1| unnamed protein product [Escherichia coli K-12]
 gi|147539|gb|AAA24511.1| RecF [Escherichia coli]
 gi|1790135|gb|AAC76723.1| gap repair protein [Escherichia coli str. K-12 substr. MG1655]
 gi|13364110|dbj|BAB38058.1| DNA repair and genetic recombination protein RecF [Escherichia coli
           O157:H7 str. Sakai]
 gi|73857491|gb|AAZ90198.1| ssDNA and dsDNA binding protein [Shigella sonnei Ss046]
 gi|85676344|dbj|BAE77594.1| gap repair protein [Escherichia coli str. K12 substr. W3110]
 gi|91074796|gb|ABE09677.1| ssDNA and dsDNA binding, ATP binding [Escherichia coli UTI89]
 gi|115515100|gb|ABJ03175.1| recombination protein F [Escherichia coli APEC O1]
 gi|157068860|gb|ABV08115.1| DNA replication and repair protein RecF [Escherichia coli HS]
 gi|157078019|gb|ABV17727.1| DNA replication and repair protein RecF [Escherichia coli E24377A]
 gi|169752992|gb|ACA75691.1| DNA replication and repair protein RecF [Escherichia coli ATCC
           8739]
 gi|169891037|gb|ACB04744.1| gap repair protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170521913|gb|ACB20091.1| DNA replication and repair protein RecF [Escherichia coli SMS-3-5]
 gi|187771421|gb|EDU35265.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4196]
 gi|188016945|gb|EDU55067.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4113]
 gi|189002585|gb|EDU71571.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4076]
 gi|189358910|gb|EDU77329.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4401]
 gi|189364573|gb|EDU82992.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4486]
 gi|189369691|gb|EDU88107.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4501]
 gi|189378816|gb|EDU97232.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC508]
 gi|190904119|gb|EDV63830.1| DNA replication and repair protein RecF [Escherichia coli B7A]
 gi|192957518|gb|EDV87964.1| DNA replication and repair protein RecF [Escherichia coli E110019]
 gi|194425324|gb|EDX41308.1| DNA replication and repair protein RecF [Escherichia coli 101-1]
 gi|208728702|gb|EDZ78303.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4206]
 gi|208735302|gb|EDZ83989.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4045]
 gi|208739431|gb|EDZ87113.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4042]
 gi|209158895|gb|ACI36328.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. EC4115]
 gi|209754128|gb|ACI75371.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|209754130|gb|ACI75372.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|209754132|gb|ACI75373.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|209754134|gb|ACI75374.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|209754136|gb|ACI75375.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|215267112|emb|CAS11559.1| gap repair protein [Escherichia coli O127:H6 str. E2348/69]
 gi|217321117|gb|EEC29541.1| DNA replication and repair protein RecF [Escherichia coli O157:H7
           str. TW14588]
 gi|218354154|emb|CAV00754.1| gap repair protein [Escherichia coli 55989]
 gi|218363034|emb|CAR00673.1| gap repair protein [Escherichia coli IAI1]
 gi|218367544|emb|CAR05329.1| gap repair protein [Escherichia coli S88]
 gi|218429552|emb|CAR10375.1| gap repair protein [Escherichia coli ED1a]
 gi|218434443|emb|CAR15371.1| gap repair protein [Escherichia coli UMN026]
 gi|222035414|emb|CAP78159.1| DNA replication and repair protein recF [Escherichia coli LF82]
 gi|226838882|gb|EEH70909.1| ssDNA and dsDNA binding protein [Escherichia sp. 1_1_43]
 gi|226902764|gb|EEH89023.1| recombination protein F [Escherichia sp. 3_2_53FAA]
 gi|227839199|gb|EEJ49665.1| recombination protein F [Escherichia coli 83972]
 gi|238861285|gb|ACR63283.1| gap repair protein [Escherichia coli BW2952]
 gi|242379239|emb|CAQ34044.1| ssDNA and dsDNA binding, ATP binding, subunit of RecFOR complex
           [Escherichia coli BL21(DE3)]
 gi|253322482|gb|ACT27084.1| DNA replication and repair protein RecF [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975552|gb|ACT41223.1| recombination protein F [Escherichia coli B str. REL606]
 gi|253979708|gb|ACT45378.1| recombination protein F [Escherichia coli BL21(DE3)]
 gi|254595103|gb|ACT74464.1| gap repair protein [Escherichia coli O157:H7 str. TW14359]
 gi|257756538|dbj|BAI28040.1| gap repair protein RecF [Escherichia coli O26:H11 str. 11368]
 gi|257766787|dbj|BAI38282.1| gap repair protein RecF [Escherichia coli O111:H- str. 11128]
 gi|260447282|gb|ACX37704.1| DNA replication and repair protein RecF [Escherichia coli DH1]
 gi|281180754|dbj|BAI57084.1| DNA replication and repair protein RecF [Escherichia coli SE15]
 gi|284923783|emb|CBG36881.1| DNA replication and repair protein [Escherichia coli 042]
 gi|290764992|gb|ADD58953.1| DNA replication and repair protein recF [Escherichia coli O55:H7
           str. CB9615]
 gi|291321656|gb|EFE61092.1| DNA replication and repair protein recF [Escherichia coli B088]
 gi|291425631|gb|EFE98667.1| DNA replication and repair protein recF [Escherichia coli FVEC1412]
 gi|291431204|gb|EFF04197.1| DNA replication and repair protein recF [Escherichia coli B185]
 gi|291468287|gb|EFF10782.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294492502|gb|ADE91258.1| DNA replication and repair protein RecF [Escherichia coli IHE3034]
 gi|298276917|gb|EFI18435.1| DNA replication and repair protein recF [Escherichia coli FVEC1302]
 gi|299878455|gb|EFI86666.1| recombination protein F [Escherichia coli MS 196-1]
 gi|300300578|gb|EFJ56963.1| recombination protein F [Escherichia coli MS 185-1]
 gi|300316881|gb|EFJ66665.1| recombination protein F [Escherichia coli MS 175-1]
 gi|300360089|gb|EFJ75959.1| recombination protein F [Escherichia coli MS 198-1]
 gi|300398378|gb|EFJ81916.1| recombination protein F [Escherichia coli MS 69-1]
 gi|300404931|gb|EFJ88469.1| recombination protein F [Escherichia coli MS 84-1]
 gi|300408375|gb|EFJ91913.1| recombination protein F [Escherichia coli MS 45-1]
 gi|300415274|gb|EFJ98584.1| recombination protein F [Escherichia coli MS 115-1]
 gi|300418364|gb|EFK01675.1| recombination protein F [Escherichia coli MS 182-1]
 gi|300452876|gb|EFK16496.1| recombination protein F [Escherichia coli MS 116-1]
 gi|300454366|gb|EFK17859.1| recombination protein F [Escherichia coli MS 21-1]
 gi|300459917|gb|EFK23410.1| recombination protein F [Escherichia coli MS 187-1]
 gi|300523202|gb|EFK44271.1| recombination protein F [Escherichia coli MS 119-7]
 gi|300531945|gb|EFK53007.1| recombination protein F [Escherichia coli MS 107-1]
 gi|300838805|gb|EFK66565.1| recombination protein F [Escherichia coli MS 124-1]
 gi|300848102|gb|EFK75862.1| recombination protein F [Escherichia coli MS 78-1]
 gi|305850343|gb|EFM50800.1| recombination protein F [Escherichia coli NC101]
 gi|306906914|gb|EFN37423.1| DNA replication and repair protein RecF [Escherichia coli W]
 gi|307555840|gb|ADN48615.1| DNA replication and repair protein RecF [Escherichia coli ABU
           83972]
 gi|307628776|gb|ADN73080.1| recombination protein F [Escherichia coli UM146]
 gi|309704147|emb|CBJ03494.1| DNA replication and repair protein [Escherichia coli ETEC H10407]
 gi|310334385|gb|EFQ00590.1| DNA replication and repair protein recF [Escherichia coli 1827-70]
 gi|312948267|gb|ADR29094.1| recombination protein F [Escherichia coli O83:H1 str. NRG 857C]
 gi|315063006|gb|ADT77333.1| gap repair protein [Escherichia coli W]
 gi|315138284|dbj|BAJ45443.1| DNA replication and repair protein recF [Escherichia coli DH1]
 gi|315254613|gb|EFU34581.1| recombination protein F [Escherichia coli MS 85-1]
 gi|315285495|gb|EFU44940.1| recombination protein F [Escherichia coli MS 110-3]
 gi|315292858|gb|EFU52210.1| recombination protein F [Escherichia coli MS 153-1]
 gi|315296898|gb|EFU56186.1| recombination protein F [Escherichia coli MS 16-3]
 gi|315618594|gb|EFU99180.1| DNA replication and repair protein recF [Escherichia coli 3431]
 gi|320191200|gb|EFW65850.1| DNA recombination and repair protein RecF [Escherichia coli O157:H7
           str. EC1212]
 gi|320193754|gb|EFW68387.1| DNA recombination and repair protein RecF [Escherichia coli
           WV_060327]
 gi|320201272|gb|EFW75853.1| DNA recombination and repair protein RecF [Escherichia coli
           EC4100B]
 gi|320639425|gb|EFX09040.1| recombination protein F [Escherichia coli O157:H7 str. G5101]
 gi|320644868|gb|EFX13904.1| recombination protein F [Escherichia coli O157:H- str. 493-89]
 gi|320650132|gb|EFX18628.1| recombination protein F [Escherichia coli O157:H- str. H 2687]
 gi|320655480|gb|EFX23415.1| recombination protein F [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661106|gb|EFX28542.1| recombination protein F [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666232|gb|EFX33238.1| recombination protein F [Escherichia coli O157:H7 str. LSU-61]
 gi|323155376|gb|EFZ41559.1| DNA replication and repair protein recF [Escherichia coli EPECa14]
 gi|323164688|gb|EFZ50483.1| DNA replication and repair protein recF [Shigella sonnei 53G]
 gi|323173318|gb|EFZ58947.1| DNA replication and repair protein recF [Escherichia coli LT-68]
 gi|323177712|gb|EFZ63296.1| DNA replication and repair protein recF [Escherichia coli 1180]
 gi|323182495|gb|EFZ67899.1| DNA replication and repair protein recF [Escherichia coli 1357]
 gi|323189565|gb|EFZ74845.1| DNA replication and repair protein recF [Escherichia coli RN587/1]
 gi|323376400|gb|ADX48668.1| DNA replication and repair protein RecF [Escherichia coli KO11]
 gi|323934949|gb|EGB31327.1| DNA replication and repair protein RecF [Escherichia coli E1520]
 gi|323939116|gb|EGB35330.1| DNA replication and repair protein RecF [Escherichia coli E482]
 gi|323944172|gb|EGB40252.1| DNA replication and repair protein RecF [Escherichia coli H120]
 gi|323949943|gb|EGB45827.1| DNA replication and repair protein RecF [Escherichia coli H252]
 gi|323955006|gb|EGB50784.1| DNA replication and repair protein RecF [Escherichia coli H263]
 gi|323959765|gb|EGB55415.1| DNA replication and repair protein RecF [Escherichia coli H489]
 gi|323971177|gb|EGB66423.1| DNA replication and repair protein RecF [Escherichia coli TA007]
 gi|324008036|gb|EGB77255.1| recombination protein F [Escherichia coli MS 57-2]
 gi|326337251|gb|EGD61086.1| DNA recombination and repair protein RecF [Escherichia coli O157:H7
           str. 1044]
 gi|326341622|gb|EGD65411.1| DNA recombination and repair protein RecF [Escherichia coli O157:H7
           str. 1125]
 gi|331036718|gb|EGI08944.1| DNA replication and repair protein RecF [Escherichia coli H736]
 gi|331042024|gb|EGI14168.1| DNA replication and repair protein RecF [Escherichia coli M605]
 gi|331047375|gb|EGI19453.1| DNA replication and repair protein RecF [Escherichia coli M718]
 gi|331053257|gb|EGI25290.1| DNA replication and repair protein RecF [Escherichia coli TA206]
 gi|331057860|gb|EGI29846.1| DNA replication and repair protein RecF [Escherichia coli TA143]
 gi|331067635|gb|EGI39037.1| DNA replication and repair protein RecF [Escherichia coli TA280]
 gi|331072970|gb|EGI44295.1| DNA replication and repair protein RecF [Escherichia coli H591]
 gi|331077795|gb|EGI49007.1| DNA replication and repair protein RecF [Escherichia coli H299]
          Length = 357

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|325124859|gb|ADY84189.1| DNA repair and genetic recombination protein [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 381

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 155/377 (41%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +     S FRN A L L FD    +F+G+N  GKTN+LEAI FL+  R  R ++  ++
Sbjct: 1   MYLSRFKQSGFRNLAPLDLEFDPHVNVFLGENAQGKTNLLEAIYFLAISRSHRTSNDREM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       FA + G      + + L     +  +   +N V    + +   HL    
Sbjct: 61  IAFGQD-----FASLAGRVHKRQLDLDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D     I+P +      + +L++ RN  L         D 
Sbjct: 116 FSPEDMELVKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
                +  Q+A    ++   R   +  L+    E  +  +    +L +      K     
Sbjct: 176 VLLGVLTEQVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAKEITAA 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                +K++   +  +    +     T +GPHR DL      K   +   S G+Q+ + +
Sbjct: 236 DQPAQIKQKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKNAHL-FASQGQQRTIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +LI   TG  PILLLD++ + LD++++ AL   +    +Q F+T TD      
Sbjct: 295 SLKLAEIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFI-HGQTQTFITTTDLDSISQ 353

Query: 357 SLNETAKFMRISNHQAL 373
            + +  +   I + Q +
Sbjct: 354 EIVKQPRIFYIHSGQII 370


>gi|148378015|ref|YP_001252556.1| DNA replication and repair protein RecF [Clostridium botulinum A
           str. ATCC 3502]
 gi|148287499|emb|CAL81558.1| DNA replication and repair protein [Clostridium botulinum A str.
           ATCC 3502]
          Length = 367

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 90/373 (24%), Positives = 165/373 (44%), Gaps = 15/373 (4%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D
Sbjct: 3   RMYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKD 62

Query: 64  VTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           + +   + ++  T+   E ++   DI+I          + + +N + I+ + EL  +L +
Sbjct: 63  LIKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNV 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SS 181
               P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       + 
Sbjct: 118 VMFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKIND 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + Q+++ G  I   R + ++ L+ +     +K       ++     + K    F 
Sbjct: 178 IIDIYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFD 234

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
             ++E    L   RK D     T IGPHR D  V   +    I  GS G+Q+  ++ +  
Sbjct: 235 NAEKELLIVLKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKF 293

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           A   +I N  G  P+LLLD++ + LD +++  +   +  I  Q  +T T     D   + 
Sbjct: 294 ASLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLDK 351

Query: 362 --AKFMRISNHQA 372
             ++   ++N + 
Sbjct: 352 KQSQLYLVNNGKI 364


>gi|49473790|ref|YP_031832.1| recombination protein F [Bartonella quintana str. Toulouse]
 gi|49239293|emb|CAF25619.1| DNA replication and repair protein recF [Bartonella quintana str.
           Toulouse]
          Length = 377

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 165/375 (44%), Positives = 233/375 (62%), Gaps = 6/375 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +++ ++ L +  +RNY+S  + F  QH +F G NG GKTN+LEA+SFLSPGRG RRA+Y
Sbjct: 5   VHKVTVRQLRLVRYRNYSSFNIHFSGQHVVFTGHNGAGKTNLLEALSFLSPGRGLRRAAY 64

Query: 62  ADVTRIGS-PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +DV+   S  + F  FAR++  + G  DI    +  D+   R + IN V  +  D L  +
Sbjct: 65  SDVSFADSGNTGFVVFARLQCALYGEVDIGTAWDIDDN--SRKVHINGVN-KTGDCLTDY 121

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             +S L PSMD +F+G S+ERRRFLDRMV AIDP H RR++D++R MR RNRL ++G  D
Sbjct: 122 CHMSVLTPSMDGLFTGSSLERRRFLDRMVLAIDPFHGRRIMDYDRAMRARNRLFSDGSED 181

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238
            +W  ++E QMAEL   I  AR+++I  L+ +  +      FP   L + GFL+    + 
Sbjct: 182 RAWFDALEKQMAELATAIAAARIDIIRLLNGMFAQAPVHTPFPRAFLQVDGFLETALSKA 241

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   ++E++  +L   R +D  + RTL GPHR+DL + Y DK +  A  STGEQK ++ G
Sbjct: 242 SAIEVEEQFCDRLQHNRAIDRAAGRTLEGPHRTDLQIFYADKNMAAASCSTGEQKALVTG 301

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + L HARL    +  APILLLDEI AHLD  +R ALF ++ D+G Q FMTGTD  +FD+L
Sbjct: 302 LVLCHARLTGIMSERAPILLLDEIVAHLDSHRRAALFDLLDDLGGQTFMTGTDPILFDAL 361

Query: 359 NETAKFMRISNHQAL 373
              A+F  I +   L
Sbjct: 362 KGRAEFFEIKDGTLL 376


>gi|260101875|ref|ZP_05752112.1| recombination protein F [Lactobacillus helveticus DSM 20075]
 gi|260084303|gb|EEW68423.1| recombination protein F [Lactobacillus helveticus DSM 20075]
 gi|328468763|gb|EGF39734.1| recombination protein F [Lactobacillus helveticus MTCC 5463]
          Length = 375

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 154/376 (40%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    +  FRN   L + FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++
Sbjct: 1   MYLDHFVVQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       +  + G    + + + L     +  + + IN V    + +    L    
Sbjct: 61  IGFGGE-----YTNLLGHVRKSQVDLTLRVLITQKGKKVWINRVEQAKLSKYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D+    I+  +      + +++  +N  L +       D 
Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+A +  ++   R + +  LS          +    KL++         ++ 
Sbjct: 176 VFLDVLSDQLAGIAAEVIFRRFKFLRYLSHYASNAYAHISLGGEKLAIAYHPSVSTIEAD 235

Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
             ++E Y K L      + ++     T  GPHR D+      K   + + S G+Q+ + +
Sbjct: 236 DTVEEIYQKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD      
Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYI-HGKTQTFITTTDLEGISL 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +   + + + 
Sbjct: 354 EIIKKPRVYHMQSGKI 369


>gi|227113114|ref|ZP_03826770.1| recombination protein F [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|253686412|ref|YP_003015602.1| DNA replication and repair protein RecF [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|259563667|sp|C6DGH9|RECF_PECCP RecName: Full=DNA replication and repair protein recF
 gi|251752990|gb|ACT11066.1| DNA replication and repair protein RecF [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 361

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P F     R++G E    + +    + D  VR   I+      V EL + L I  
Sbjct: 61  IRHDQPEF-VLHGRIDGTETERSVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL+R RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFAAWSNMKRLLRQRNAALRQ-VSHYGQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R +   A+++ I      +  P   LS +       +       
Sbjct: 176 AWDQELVPLAERISEWRAQYSAAIANDIA-TTCTQFLPEFSLSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D M   T +GPH++D  +     A+     S G+ K+++  + LA  
Sbjct: 229 -EYAELLERQFERDRMLGYTALGPHKADFRIRASGVAVEDML-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
             ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++        D + E  K
Sbjct: 287 EFLTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMVGEKGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|262273132|ref|ZP_06050949.1| DNA recombination and repair protein RecF [Grimontia hollisae CIP
           101886]
 gi|262222888|gb|EEY74196.1| DNA recombination and repair protein RecF [Grimontia hollisae CIP
           101886]
          Length = 358

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I + RN  +  L   +     VG NG GKT++LEA+ +L  GR FR      V
Sbjct: 1   MALSRLSIHDLRNIEACDLSLSSGFNFLVGPNGSGKTSVLEAVYYLGHGRSFRSPLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R           R++  + L  + ++        V+   I +   + + +L + L +  
Sbjct: 61  IRHQQDR-LVVHGRIQHGDTLLPVGLQKNRDGSTEVK---IGEERGQKLVQLAEVLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR F+D  VF ++P+        +RL + RN L+          S
Sbjct: 117 ITPEGFELLTGGPKFRRAFIDWGVFHVEPQFYPVWARVKRLTKQRNALMKTARSYRE-LS 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             +A++A L  +I+  R E I  L+    +  +    P  ++ L+       +       
Sbjct: 176 YWDAELAPLANQIDQWRKEYIEKLAERAAKLCEA-FLPEYEIRLSYSRGWDKETG----- 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA  L D    D     T+ GPH++DL +      +     S G+ K+++  + LA  
Sbjct: 230 --YADLLRDNFLRDQQLGYTVSGPHKADLRLRVGGTPVEDVL-SRGQLKLMVCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363
           + +++      I L+D+ ++ LD  +R  L   +   G+Q+F++         + +E +K
Sbjct: 287 QQLTDDKKKQCIYLIDDFASELDSQRRALLAEQLKATGAQVFVSAISADQVAEMCDENSK 346

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 347 MFHVEHGKI 355


>gi|238750287|ref|ZP_04611789.1| DNA replication and repair protein recF [Yersinia rohdei ATCC
           43380]
 gi|238711520|gb|EEQ03736.1| DNA replication and repair protein recF [Yersinia rohdei ATCC
           43380]
          Length = 361

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P F     RV+  E  + + +      D  VR   I+      V EL + L +  
Sbjct: 61  IRHDCPEF-VLHGRVDANERESSVGLSKSRLGDSKVR---IDGTDGHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAMAADISATCA-LFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 347 MFRVEHGKI 355


>gi|77464922|ref|YP_354426.1| recombination protein F [Rhodobacter sphaeroides 2.4.1]
 gi|77389340|gb|ABA80525.1| RecF protein [Rhodobacter sphaeroides 2.4.1]
          Length = 368

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 140/370 (37%), Positives = 203/370 (54%), Gaps = 17/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++ + R+ FD +   FVG NG GKTN+LEAIS LSPGRG RRA+  ++
Sbjct: 9   LAVTSLALSHFRSHRAARMGFDGRPVAFVGSNGAGKTNLLEAISLLSPGRGLRRAAADEI 68

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A V G+    +I    E    R VR     D        L + LRI W
Sbjct: 69  ARRPEALGWKVAAAVTGLHSGHEIETWAEGGGARQVRV----DGKAATQVMLGRLLRIVW 124

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR+++  +  RRRFLDR+  +  P H   ++D+E+ MR RNRLL E   D+ W  
Sbjct: 125 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 184

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E +MAE    I   R E +  L  +  +   +  FP   LS+                
Sbjct: 185 ALEGRMAEAARAIRAHRDEAVARL--MAAQGAAETAFPRAMLSVAS-----------DDP 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+      +GR+ D  + RTL+GPHR+DL   Y  K +  A  STGEQK +L+ + LA+A
Sbjct: 232 EDLGAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G AP+LLLDE++AHLDE +R ALF  +  +G+Q FMTGT   +F +L + A+ 
Sbjct: 292 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQR 351

Query: 365 MRISNHQALC 374
           + ++  Q L 
Sbjct: 352 IEVTEAQGLS 361


>gi|332997866|gb|EGK17474.1| DNA replication and repair protein recF [Shigella flexneri K-272]
 gi|333013661|gb|EGK33026.1| DNA replication and repair protein recF [Shigella flexneri K-227]
          Length = 357

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 157/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +PR      + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPRFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|328471240|gb|EGF42142.1| recombination protein F [Vibrio parahaemolyticus 10329]
          Length = 359

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 153/369 (41%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V
Sbjct: 1   MPLSRLIIQQFRNIKACDIQLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNECDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +P        F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKTASSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R   I  +   + E + +   P  ++ L  +     D       
Sbjct: 177 YWDQEMARLAENISQWRSLYIEQM-KTVAETICQTFLPEFEIQLKYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YQEILEKNFERDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  T+  + D L++  K
Sbjct: 288 QHLTAMTGKQCIYLIDDFASELDSQRRKRLAACLKETGAQVFVSSITENQIADMLDDNGK 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 LFHVEHGRI 356


>gi|110644043|ref|YP_671773.1| recombination protein F [Escherichia coli 536]
 gi|191170384|ref|ZP_03031937.1| DNA replication and repair protein RecF [Escherichia coli F11]
 gi|300983651|ref|ZP_07176692.1| recombination protein F [Escherichia coli MS 200-1]
 gi|123343429|sp|Q0TB07|RECF_ECOL5 RecName: Full=DNA replication and repair protein recF
 gi|110345635|gb|ABG71872.1| DNA replication and repair protein RecF [Escherichia coli 536]
 gi|190909192|gb|EDV68778.1| DNA replication and repair protein RecF [Escherichia coli F11]
 gi|300306874|gb|EFJ61394.1| recombination protein F [Escherichia coli MS 200-1]
 gi|324012739|gb|EGB81958.1| recombination protein F [Escherichia coli MS 60-1]
          Length = 357

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSGGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|218551230|ref|YP_002385022.1| recombination protein F [Escherichia fergusonii ATCC 35469]
 gi|226737798|sp|B7LK42|RECF_ESCF3 RecName: Full=DNA replication and repair protein recF
 gi|218358772|emb|CAQ91429.1| gap repair protein [Escherichia fergusonii ATCC 35469]
 gi|323965761|gb|EGB61212.1| DNA replication and repair protein RecF [Escherichia coli M863]
 gi|323975233|gb|EGB70337.1| DNA replication and repair protein RecF [Escherichia coli TW10509]
 gi|324111597|gb|EGC05578.1| DNA replication and repair protein RecF [Escherichia fergusonii
           B253]
 gi|327250843|gb|EGE62545.1| DNA replication and repair protein recF [Escherichia coli STEC_7v]
          Length = 357

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAFI-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFTLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|188491708|ref|ZP_02998978.1| DNA replication and repair protein RecF [Escherichia coli 53638]
 gi|188486907|gb|EDU62010.1| DNA replication and repair protein RecF [Escherichia coli 53638]
          Length = 357

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 157/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++    +   D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAAHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|320157814|ref|YP_004190193.1| DNA recombination and repair protein RecF [Vibrio vulnificus
           MO6-24/O]
 gi|319933126|gb|ADV87990.1| DNA recombination and repair protein RecF [Vibrio vulnificus
           MO6-24/O]
          Length = 359

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 154/367 (41%), Gaps = 14/367 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +         +G NG GKT++LEAI  L  GR F+ A    V
Sbjct: 1   MPLSRLIIQQFRNIKACDIALSPGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSALTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNECDQLFVHGRFLNSDQFELPIGINKQRDGTTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +P        F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKSAKSYQE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R + +  + S   E + +E  P   + L  +   + +       
Sbjct: 177 YWDKEMARLAELISQWRADYVAQMQSKA-EQLCQEFLPEFHIQLKYYRGWEKETP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L +  + D     T+ GP+++DL +   +  +     S G+ K+++  + LA  
Sbjct: 231 --YQQILEENFERDQTLGYTVSGPNKADLRIKVNNTPVEDVL-SRGQLKLMVCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   + L+D+ ++ LD  +R  L   +   G+Q+F++  T+  + D  +++ +
Sbjct: 288 QHLTEKTGKQCVYLIDDFASELDSQRRKRLADCLKQTGAQVFVSSITENQISDMRDDSGR 347

Query: 364 FMRISNH 370
              +   
Sbjct: 348 LFHVEQG 354


>gi|289826403|ref|ZP_06545515.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 357

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      + EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEECETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E  +A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|325499507|gb|EGC97366.1| recombination protein F [Escherichia fergusonii ECD227]
          Length = 357

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 157/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAFI-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFTLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D +   T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRLLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|255262668|ref|ZP_05342010.1| DNA replication and repair protein RecF [Thalassiobium sp. R2A62]
 gi|255105003|gb|EET47677.1| DNA replication and repair protein RecF [Thalassiobium sp. R2A62]
          Length = 368

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 137/371 (36%), Positives = 208/371 (56%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L IS FR++  + L  DA+     G NGVGKTN++EAIS LSPGRG RR+S  D+
Sbjct: 4   LRLSELTISHFRSHKRVALEIDARPVAIYGANGVGKTNLIEAISLLSPGRGLRRSSAEDI 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           TR      +   A +  +  L +I    E    R V+     D        L +  R+ W
Sbjct: 64  TRRPEAVGWKVRAVLHSLNQLHEIETWSEGGSARQVKV----DSKASTQVALGRIGRLLW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+P+MDR++   +  RRRFLDR   + +P H   ++ +++ MR RNRLL +   D  W  
Sbjct: 120 LIPAMDRLWIEGAEGRRRFLDRATLSFEPTHAEAVLTYDKAMRERNRLLKDQVRDGHWYV 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +IEAQMAE G++I   R   I+ L  +  +   +  FP   L L      + D+   A  
Sbjct: 180 AIEAQMAEAGLRITQNRAFAISEL--MAAQASARTAFPTAVLQL-----LEGDEGLPASV 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +++   L + R+ D  + RTLIGPHR+DL   Y  K I     STGEQK +L+ + LA+ 
Sbjct: 233 DDHRTALSENRQRDLYAGRTLIGPHRTDLGATYAAKDIPAKDCSTGEQKALLISLILANG 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++ + G  P+LLLDE++AHLD D+R AL+  +T +G+Q +MTGT   +FD+L + A++
Sbjct: 293 RALAQSFGAPPLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTGPELFDTLGDRAQY 352

Query: 365 MRISNHQALCI 375
           + +S   A  +
Sbjct: 353 LDVSEDCAALV 363


>gi|27364431|ref|NP_759959.1| recombination protein F [Vibrio vulnificus CMCP6]
 gi|32129961|sp|Q8DDJ1|RECF_VIBVU RecName: Full=DNA replication and repair protein recF
 gi|27360550|gb|AAO09486.1| DNA recombination and repair protein RecF [Vibrio vulnificus CMCP6]
          Length = 359

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 154/367 (41%), Gaps = 14/367 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +         +G NG GKT++LEAI  L  GR F+ A    V
Sbjct: 1   MPLSRLIIQQFRNIKACDIALSPGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSALTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNECDQLFVYGRFLNSDQFELPIGINKQRDGTTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +P        F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKSAKSYQE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R + +  + S   E + +E  P   + L  +   + +       
Sbjct: 177 YWDKEMARLAELISQWRADYVAQMQSKA-EQLCQEFLPEFHIQLKYYRGWEKETP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L +  + D     T+ GP+++DL +   +  +     S G+ K+++  + LA  
Sbjct: 231 --YQQILEENFERDQTLGYTVSGPNKADLRIKVNNTPVEDVL-SRGQLKLMVCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   + L+D+ ++ LD  +R  L   +   G+Q+F++  T+  + D  +++ +
Sbjct: 288 QHLTEKTGKQCVYLIDDFASELDSQRRKRLADCLKQTGAQVFVSSITENQISDMRDDSGR 347

Query: 364 FMRISNH 370
              +   
Sbjct: 348 LFHVEQG 354


>gi|126460791|ref|YP_001041905.1| recombination protein F [Rhodobacter sphaeroides ATCC 17029]
 gi|126102455|gb|ABN75133.1| DNA replication and repair protein RecF [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 363

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 141/370 (38%), Positives = 203/370 (54%), Gaps = 17/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++ + R+ FD +   FVG NG GKTN+LEAIS LSPGRG RRA+  ++
Sbjct: 4   LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNLLEAISLLSPGRGLRRAAADEI 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A V G+    +I    E    R VR     D        L + LRI W
Sbjct: 64  ARRPEALGWKVAAAVTGLHSGHEIETWAEGGGARQVRI----DGKAATQVMLGRLLRIVW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR+++  +  RRRFLDR+  +  P H   ++D+E+ MR RNRLL E   D+ W  
Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHG 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E +MAE    I   R E +  L  +  +   +  FP   LS+                
Sbjct: 180 ALEGRMAEAARAIRAHREEAVARL--MAAQGAAETAFPRAVLSVAS-----------DDP 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+ A    +GR+ D  + RTL+GPHR+DL   Y  K +  A  STGEQK +L+ + LA+A
Sbjct: 227 EDLAAAWAEGRRRDMAAGRTLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANA 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G AP+LLLDE++AHLDE +R ALF  +  +G+Q FMTGT   +F +L   A+ 
Sbjct: 287 RALAEDLGAAPVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGYRAQR 346

Query: 365 MRISNHQALC 374
           + ++  Q L 
Sbjct: 347 IEVTEAQGLS 356


>gi|262046285|ref|ZP_06019248.1| recombination protein F [Lactobacillus crispatus MV-3A-US]
 gi|260573615|gb|EEX30172.1| recombination protein F [Lactobacillus crispatus MV-3A-US]
          Length = 375

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 154/376 (40%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    +  FRN   L + FD+   IF+G N  GKTN+LEAI FL+  R  R  +  D+
Sbjct: 1   MYLDHFTVQNFRNLKKLDVNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNNDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       F  + G    + + + L     +  + + IN V    + +    L    
Sbjct: 61  IGFGGE-----FTNLLGHVHKSQVDLDLRVLITQKGKKVWINRVEQAKLSKYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D+    I+  +      + +++  +N  L +       D 
Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLIQKNNYLKQLAKGKAKDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+A +  ++   R + +  LS    +     +    + S+         Q+ 
Sbjct: 176 VFLDVLSDQLAGIAAEVVFRRFKFLKYLSHYASDAYAHISLGSEQFSIAYHPSVADIQAD 235

Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            + +E Y K L      +  +     T  GPHR D+      +   + + S G+Q+ + +
Sbjct: 236 DSTEEIYQKILASYARNKASEIRKGTTTSGPHRDDIEFKLDGQNAHL-YASQGQQRSIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD      
Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +   I + + 
Sbjct: 354 EIIKKPRVYHIQSGKI 369


>gi|157368283|ref|YP_001476272.1| recombination protein F [Serratia proteamaculans 568]
 gi|166918726|sp|A8G7Q4|RECF_SERP5 RecName: Full=DNA replication and repair protein recF
 gi|157320047|gb|ABV39144.1| DNA replication and repair protein RecF [Serratia proteamaculans
           568]
          Length = 361

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEA+  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEAADLALAPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P F     R++G E    + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHDQPEFI-LHGRIDGAEREISVGLSKSRQGDSKVR---IDGSDGHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I      +  P   LS +       +       
Sbjct: 176 AWDQELIPLAERISEWRAAYSDAIAADITATCA-QFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + L+D+ ++ LD  +R  L   +    +Q+F++    + V D   E  K
Sbjct: 287 EFLTRQSGRRCLYLIDDFASELDTGRRRLLADRLKATQAQVFVSAVSAEQVTDMAGEKGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|292490134|ref|YP_003533029.1| DNA replication and repair protein RecF [Erwinia amylovora
           CFBP1430]
 gi|292901138|ref|YP_003540507.1| DNA replication and repair protein [Erwinia amylovora ATCC 49946]
 gi|291200986|emb|CBJ48125.1| DNA replication and repair protein [Erwinia amylovora ATCC 49946]
 gi|291555576|emb|CBA24169.1| DNA replication and repair protein recF [Erwinia amylovora
           CFBP1430]
          Length = 361

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 146/369 (39%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEDADLALAPGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R+   E    + +      D  VR   I+      V EL + L +  
Sbjct: 61  IRHDRDAF-VLHGRIAATEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQMLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR ++D   F  +P       +  RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHNEPGFFNAWSNLRRLLKQRNAALRQ-VSRYQQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++A L  +I+  R     A+++ I      +  P  +LS +       D       
Sbjct: 176 AWDQELAPLAEQISQWRAAYSEAIAADINATCA-QFLPEFQLSFSFQRGWDKDSG----- 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T  GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 230 --YAELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++   G   + L+D+ ++ LDE +R  L   +    +Q+F++       FD  +E  K
Sbjct: 287 EFLTRQNGRRCLYLIDDFASELDETRRQLLAAHLKATQAQVFVSAIAAEHVFDMADEKGK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFHVEQGKI 355


>gi|256021282|ref|ZP_05435147.1| recombination protein F [Shigella sp. D9]
 gi|331670544|ref|ZP_08371383.1| DNA replication and repair protein RecF [Escherichia coli TA271]
 gi|332282513|ref|ZP_08394926.1| gap repair protein [Shigella sp. D9]
 gi|331062606|gb|EGI34526.1| DNA replication and repair protein RecF [Escherichia coli TA271]
 gi|332104865|gb|EGJ08211.1| gap repair protein [Shigella sp. D9]
          Length = 357

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 157/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ +++   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMVDTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|104773261|ref|YP_618241.1| recombination protein F [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|123378549|sp|Q1GC40|RECF_LACDA RecName: Full=DNA replication and repair protein recF
 gi|103422342|emb|CAI96850.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 381

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 155/377 (41%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +     S FRN A L L FD    +F+G+N  GKTN+LEAI FL+  R  R ++  ++
Sbjct: 1   MYLSRFKQSGFRNLAPLNLEFDPHVNVFLGENAQGKTNLLEAIYFLAISRSHRTSNDREM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       FA + G      + + L     +  +   +N V    + +   HL    
Sbjct: 61  IAFGQD-----FASLAGRVHKRQLDLDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D     I+P +      + +L++ RN  L         D 
Sbjct: 116 FSPEDMELVKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
                +  Q+A    ++   R   +  L+    E  +  +    +L +      K     
Sbjct: 176 VLLGVLTEQVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAKEITAA 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                +K++   +  +    +     T +GPHR DL      K   +   S G+Q+ + +
Sbjct: 236 DQPAQIKQKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKNAHL-FASQGQQRTIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +LI   TG  PILLLD++ + LD++++ AL   +    +Q F+T TD      
Sbjct: 295 SLKLAEIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFI-HGQTQTFITTTDLDSISQ 353

Query: 357 SLNETAKFMRISNHQAL 373
            + +  +   I + Q +
Sbjct: 354 EIVKQPRIFYIHSGQII 370


>gi|254295378|ref|YP_003061401.1| DNA replication and repair protein RecF [Hirschia baltica ATCC
           49814]
 gi|254043909|gb|ACT60704.1| DNA replication and repair protein RecF [Hirschia baltica ATCC
           49814]
          Length = 396

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 136/382 (35%), Positives = 213/382 (55%), Gaps = 10/382 (2%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
              + I+ L +  FRN+AS  L  DA+     G NG GKTN+LEA+S L PG+G R AS 
Sbjct: 17  PQGLTIQRLALHNFRNHASTVLEMDARPVCLFGANGAGKTNLLEAVSMLGPGKGLRAASL 76

Query: 62  ADVTRIGSPS----FFSTFARVEGMEGLADISIKLETR-DDRSVRCLQINDVVIRVVDEL 116
             + R+ +       ++  AR++       IS+ L+   D R+ R  +++D  +     L
Sbjct: 77  PSLVRVEAGESVVGGWAISARMDDAGLDRQISVGLDVSPDGRTRRVAKLDDAPV-SQTNL 135

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
            + +R+ WL P+MDR+F+G + +RR+F DR V A  P H      +E+ MR RN L  +G
Sbjct: 136 AELVRVVWLTPAMDRVFAGPAGDRRKFYDRQVLAHVPAHGSASAAYEKAMRERNALFEQG 195

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
             D+SW  ++EA++AE G  I + R   +  + + I +   + +FP   LS+ G  +   
Sbjct: 196 RMDASWLDALEARLAEAGAAIAVNRATALKRIQAAI-DARPEGHFPKADLSIAGKFEAMA 254

Query: 237 DQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            Q  S  A++   +  L  GR  DS++ RTL G HRSDL V +  K +  A  STGEQK 
Sbjct: 255 LQGDSQAAIEGAISDSLKVGRARDSVAGRTLAGVHRSDLQVVHRPKQLPAAQCSTGEQKA 314

Query: 295 VLVGIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           +L+G+ LA+A+ L+       P+LLLDE +AHLD  +R AL+  +  +G Q ++TGTD +
Sbjct: 315 LLMGMILANAKALLEGDFAPNPLLLLDEAAAHLDSVRRAALYDELAALGGQAWLTGTDAA 374

Query: 354 VFDSLNETAKFMRISNHQALCI 375
           +FD+  + A+   + N Q + +
Sbjct: 375 LFDAFGDRAQRFCVENGQVIKV 396


>gi|283787600|ref|YP_003367465.1| DNA replication and repair protein [Citrobacter rodentium ICC168]
 gi|282951054|emb|CBG90732.1| DNA replication and repair protein [Citrobacter rodentium ICC168]
          Length = 357

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 152/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    SF     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHDQESF-VLHGRLQGDERETSIGLSKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R      ++  + +  Q +  P   LS +     + +       
Sbjct: 176 PWDKELIPLAEQISAWRAAYSAGIAQDMADTCQ-QFLPEFTLSFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EYLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFNVEKGKI 355


>gi|193063850|ref|ZP_03044937.1| DNA replication and repair protein RecF [Escherichia coli E22]
 gi|194428115|ref|ZP_03060659.1| DNA replication and repair protein RecF [Escherichia coli B171]
 gi|209921177|ref|YP_002295261.1| recombination protein F [Escherichia coli SE11]
 gi|260846515|ref|YP_003224293.1| gap repair protein RecF [Escherichia coli O103:H2 str. 12009]
 gi|226737795|sp|B6I3T3|RECF_ECOSE RecName: Full=DNA replication and repair protein recF
 gi|192930565|gb|EDV83172.1| DNA replication and repair protein RecF [Escherichia coli E22]
 gi|194413873|gb|EDX30151.1| DNA replication and repair protein RecF [Escherichia coli B171]
 gi|209914436|dbj|BAG79510.1| DNA replication and repair protein RecF [Escherichia coli SE11]
 gi|257761662|dbj|BAI33159.1| gap repair protein RecF [Escherichia coli O103:H2 str. 12009]
 gi|323161048|gb|EFZ46967.1| DNA replication and repair protein recF [Escherichia coli E128010]
 gi|324018432|gb|EGB87651.1| recombination protein F [Escherichia coli MS 117-3]
 gi|324115948|gb|EGC09874.1| DNA replication and repair protein RecF [Escherichia coli E1167]
          Length = 357

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R +    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAQYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|110807610|ref|YP_691130.1| recombination protein F [Shigella flexneri 5 str. 8401]
 gi|123342286|sp|Q0SYP0|RECF_SHIF8 RecName: Full=DNA replication and repair protein recF
 gi|110617158|gb|ABF05825.1| ssDNA and dsDNA binding, ATP binding [Shigella flexneri 5 str.
           8401]
          Length = 357

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGCV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMDDTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|24114990|ref|NP_709500.1| recombination protein F [Shigella flexneri 2a str. 301]
 gi|30065008|ref|NP_839179.1| recombination protein F [Shigella flexneri 2a str. 2457T]
 gi|51316304|sp|Q7BZ80|RECF_SHIFL RecName: Full=DNA replication and repair protein recF
 gi|24054242|gb|AAN45207.1| Rec protein [Shigella flexneri 2a str. 301]
 gi|30043269|gb|AAP18990.1| Rec protein [Shigella flexneri 2a str. 2457T]
 gi|281603073|gb|ADA76057.1| DNA replication and repair protein recF [Shigella flexneri 2002017]
 gi|313647708|gb|EFS12156.1| DNA replication and repair protein recF [Shigella flexneri 2a str.
           2457T]
 gi|332750521|gb|EGJ80930.1| DNA replication and repair protein recF [Shigella flexneri K-671]
 gi|332750692|gb|EGJ81100.1| DNA replication and repair protein recF [Shigella flexneri 4343-70]
 gi|332751786|gb|EGJ82184.1| DNA replication and repair protein recF [Shigella flexneri 2747-71]
 gi|332764071|gb|EGJ94308.1| DNA replication/repair protein RecF [Shigella flexneri 2930-71]
 gi|332997495|gb|EGK17111.1| DNA replication and repair protein recF [Shigella flexneri K-218]
 gi|333013217|gb|EGK32590.1| DNA replication and repair protein recF [Shigella flexneri K-304]
          Length = 357

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMDDTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|62182324|ref|YP_218741.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|168233390|ref|ZP_02658448.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168260380|ref|ZP_02682353.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|197251211|ref|YP_002148774.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263684|ref|ZP_03163758.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198244935|ref|YP_002217786.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205354577|ref|YP_002228378.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207859062|ref|YP_002245713.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224585635|ref|YP_002639434.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238913089|ref|ZP_04656926.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|75505469|sp|Q57I02|RECF_SALCH RecName: Full=DNA replication and repair protein recF
 gi|226737826|sp|B5EYB2|RECF_SALA4 RecName: Full=DNA replication and repair protein recF
 gi|226737827|sp|B5FN08|RECF_SALDC RecName: Full=DNA replication and repair protein recF
 gi|226737828|sp|B5QUP8|RECF_SALEP RecName: Full=DNA replication and repair protein recF
 gi|226737829|sp|B5RFY9|RECF_SALG2 RecName: Full=DNA replication and repair protein recF
 gi|254790486|sp|C0Q2K7|RECF_SALPC RecName: Full=DNA replication and repair protein recF
 gi|62129957|gb|AAX67660.1| gap repair protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|197214914|gb|ACH52311.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241939|gb|EDY24559.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197939451|gb|ACH76784.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205274358|emb|CAR39383.1| recF protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205332587|gb|EDZ19351.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205350391|gb|EDZ37022.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710865|emb|CAR35229.1| recF protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224470163|gb|ACN47993.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|322716815|gb|EFZ08386.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|326625572|gb|EGE31917.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326629713|gb|EGE36056.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 357

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      + EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E  +A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|261819373|ref|YP_003257479.1| recombination protein F [Pectobacterium wasabiae WPP163]
 gi|261603386|gb|ACX85872.1| DNA replication and repair protein RecF [Pectobacterium wasabiae
           WPP163]
          Length = 361

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 151/369 (40%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P F     R++G E    + +    + D  VR   I+      V EL + L I  
Sbjct: 61  IRHDQPEF-VLHGRIDGTETERSVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL+R RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHHEPGFLAAWSNMKRLLRQRNAALRQ-VSHYGQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R +    ++S I      +  P   LS +       +       
Sbjct: 176 AWDQELVPLAERISEWRAQYSAGIASDIAATC-TQFLPEFSLSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D M   T +GPH++D  +     A+     S G+ K+++  + L   
Sbjct: 229 -EYAELLERQFERDRMLGYTALGPHKADFRIRASGVAVEDML-SRGQLKLLMCALRLVQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
             ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++        D + E  K
Sbjct: 287 EFLTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMIGEKGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|320174826|gb|EFW49949.1| DNA recombination and repair protein RecF [Shigella dysenteriae CDC
           74-1112]
          Length = 357

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|213424953|ref|ZP_03357703.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 357

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      + EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  RVE  +A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRVEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|312967890|ref|ZP_07782102.1| DNA replication and repair protein recF [Escherichia coli 2362-75]
 gi|312287451|gb|EFR15359.1| DNA replication and repair protein recF [Escherichia coli 2362-75]
          Length = 357

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDRHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|125624996|ref|YP_001033479.1| recombination protein F [Lactococcus lactis subsp. cremoris MG1363]
 gi|166220713|sp|A2RNA8|RECF_LACLM RecName: Full=DNA replication and repair protein recF
 gi|124493804|emb|CAL98796.1| DNA replication and repair protein recF [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071794|gb|ADJ61194.1| recombination protein F [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 359

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 97/370 (26%), Positives = 156/370 (42%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K + +  FRNY  L+L F     IF+G N  GKTNILEAI FL+  R  R +   ++
Sbjct: 1   MKLKQIELKNFRNYEDLKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R           +V G+   A  ++ LE +     R  + N +    + +    L+I  
Sbjct: 61  IRWSGQEM-----KVSGLVEKAHATVPLEVQLSSKGRIAKANHLKENRLADYIGQLKILM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
             P    +  G    RRRF+D  +  I   +    + + R ++ RN  L   +   D ++
Sbjct: 116 FAPENLELVKGSPATRRRFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDQAKIDKNF 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            + ++ Q+AE G KI   R   I  L     +  ++       L +T   + K D     
Sbjct: 176 LTVLDEQLAEHGNKIMFERKTFIEKLEIHAKKIHEQLTHGLETLKITYNQNVKTD----- 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
               ++K+L   +  D    +T +GPHR DL     D  +    GS G+Q+ V + I LA
Sbjct: 231 ----FSKELLSRQDHDIFRHQTTVGPHRDDLQFFINDINV-ADFGSQGQQRTVALSIKLA 285

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              LI   TG  PILLLD++ + LD  ++  L               T      +L E  
Sbjct: 286 EIDLIFEETGEYPILLLDDVMSELDNHRQLDLIETSLGKTQTFIT-TTTLDHLKNLPENL 344

Query: 363 KFMRISNHQA 372
               +++   
Sbjct: 345 SIFHVTDGTI 354


>gi|194431058|ref|ZP_03063351.1| DNA replication and repair protein RecF [Shigella dysenteriae 1012]
 gi|194420513|gb|EDX36589.1| DNA replication and repair protein RecF [Shigella dysenteriae 1012]
 gi|320180041|gb|EFW54983.1| DNA recombination and repair protein RecF [Shigella boydii ATCC
           9905]
 gi|332084050|gb|EGI89257.1| DNA replication and repair protein recF [Shigella dysenteriae
           155-74]
          Length = 357

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLIKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|187732412|ref|YP_001882466.1| recombination protein F [Shigella boydii CDC 3083-94]
 gi|226737836|sp|B2TUS8|RECF_SHIB3 RecName: Full=DNA replication and repair protein recF
 gi|187429404|gb|ACD08678.1| DNA replication and repair protein RecF [Shigella boydii CDC
           3083-94]
          Length = 357

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 157/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D +   T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRLLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|332996042|gb|EGK15669.1| DNA replication and repair protein recF [Shigella flexneri VA-6]
          Length = 357

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 157/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +PR      + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPRFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMDDTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|260431696|ref|ZP_05785667.1| recombination protein F [Silicibacter lacuscaerulensis ITI-1157]
 gi|260415524|gb|EEX08783.1| recombination protein F [Silicibacter lacuscaerulensis ITI-1157]
          Length = 366

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 11/363 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++   R+  D +     G NG GKTNILEA+S  SPGRG RRAS A++
Sbjct: 3   LALTELTVSHFRSHKLARMALDGRPVALYGPNGAGKTNILEAVSLFSPGRGMRRASAAEM 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           TR      +     ++     ++I    E     + R ++I+      +D L K  R+ W
Sbjct: 63  TRRPEALGWKLSGLLDVQGRRSEIETWSE---GGAARQVRIDGKAASQID-LGKLARVVW 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+P+MDR++   +  RRRFLDR+  + DP H    + +E+ MR RNRLL E   D+ W +
Sbjct: 119 LMPAMDRLWIEGAEGRRRFLDRVTLSFDPSHAEAALTYEKAMRERNRLLKEQVRDAHWYA 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++EAQMAE G +I+ AR+  +  L     +   +  FP  +L L        D +     
Sbjct: 179 ALEAQMAETGHRIHTARMNALAQLR--AAQEQAETAFPSAELELVQPEGAMPDSA----- 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           ++  + L + R  D  + RTL+GPHRSDL   +  K +  +  STGEQK +LV + L++A
Sbjct: 232 QDLLEALAESRFRDLSAGRTLVGPHRSDLYGVFAAKGVAASECSTGEQKALLVSLILSNA 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  PILLLDE++AHLD D+R AL+  +  +G+Q +MT T   +F  L E A+ 
Sbjct: 292 RALAAQVGAPPILLLDEVAAHLDADRRAALYDEICALGAQAWMTATGPELFAELGERAQA 351

Query: 365 MRI 367
             +
Sbjct: 352 FEV 354


>gi|170755060|ref|YP_001779630.1| recombination protein F [Clostridium botulinum B1 str. Okra]
 gi|226737780|sp|B1IDU6|RECF_CLOBK RecName: Full=DNA replication and repair protein recF
 gi|169120272|gb|ACA44108.1| DNA replication and repair protein RecF [Clostridium botulinum B1
           str. Okra]
          Length = 364

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 164/372 (44%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+
Sbjct: 1   MYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   + ++  T+   E ++   DI+I          + + +N + I+ + EL  +L + 
Sbjct: 61  IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182
              P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +  
Sbjct: 116 MFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKINDI 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+++ G  I   R + ++ L+ +     +K       ++     + K    F  
Sbjct: 176 IDIYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            ++E    L   RK D     T IGPHR D  V   +    I  GS G+Q+  ++ +  A
Sbjct: 233 TEKELLIVLKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361
              +I N  G  P+LLLD++ + LD +++  +   +  I  Q  +T T     D   +  
Sbjct: 292 SLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLDKK 349

Query: 362 -AKFMRISNHQA 372
            ++   ++N + 
Sbjct: 350 QSQLYLVNNGKI 361


>gi|270264121|ref|ZP_06192388.1| DNA replication and repair protein RecF [Serratia odorifera 4Rx13]
 gi|270041770|gb|EFA14867.1| DNA replication and repair protein RecF [Serratia odorifera 4Rx13]
          Length = 361

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEA+  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEAADLALAPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P F     R+EG E    + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHDQPEFI-LHGRIEGAEREISVGLSKSRQGDSKVR---IDGSDGHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I      +  P   LS +       +       
Sbjct: 176 AWDQELIPLAERISEWRAAYSDAIAADITATCA-QFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D +   T +GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 229 -DYGELLERQFERDRVLTYTAVGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + L+D+ ++ LD  +R  L   +    +Q+F++    + V D   E  K
Sbjct: 287 EFLTRQSGRRCLYLIDDFASELDTGRRRLLADRLKATQAQVFVSAVSAEQVTDMAGEKGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|329297783|ref|ZP_08255119.1| recombination protein F [Plautia stali symbiont]
          Length = 361

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 150/369 (40%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEQADLTLAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R+EG E    + +      D  VR   I+      V EL + L +  
Sbjct: 61  IRHDQDAF-VLHGRIEGSERELAVGLSKNRAGDSKVR---IDGSDGHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR ++D   F   P       +  RL++ RN  L +     S   
Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHAYPGFFLAWSNLRRLLKQRNAALRQ-VARYSQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E   A++S I      +  P   LS +       +       
Sbjct: 176 PWDQELVPLAEQISAWRAEYSAAIASEITATCS-QFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++ + L    + D     T  GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 229 -DFGELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++ ++G   + L+D+ ++ LD+ +R  L   +    +Q+F++    + V D  +E  K
Sbjct: 287 EYLTRSSGRRCLYLIDDFASELDDTRRRLLAECLKATQAQVFVSAIGVEHVIDMSDEKGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|160893408|ref|ZP_02074193.1| hypothetical protein CLOL250_00957 [Clostridium sp. L2-50]
 gi|156864803|gb|EDO58234.1| hypothetical protein CLOL250_00957 [Clostridium sp. L2-50]
          Length = 360

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 96/355 (27%), Positives = 159/355 (44%), Gaps = 20/355 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ LNI+ +RNY  L + FD    I  GDN  GKTNILE+I   +  +  R +   ++
Sbjct: 1   MYVESLNINNYRNYDELFITFDKNTNILYGDNAQGKTNILESIYMAATTKSHRGSKDREI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            +IG        + +      +DIS +++    +   + + I+ + IR   EL   L + 
Sbjct: 61  IKIGEEE-----SHIRLCIKKSDISHRIDMHLRKNKNKGVAIDGLPIRRTTELFGLLNVI 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRFLD  +  +   + + +  + +++  RN LL +  ++ S  
Sbjct: 116 FFSPEDLSIIKNGPSERRRFLDLELCQLSRLYYQNLSSYSKILNQRNNLLKQIVYNKSLM 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                   Q+ + G K+   R   I  L++LI E   K      KL +    +   D   
Sbjct: 176 DTLDVWNIQLVDYGKKVIKERQNFIMMLNNLIGEIHSKLTSGKEKLEIIYDKNVSED--- 232

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                E+ K L D   +D     T  GPHR D++    +       GS G+Q+ V + + 
Sbjct: 233 -----EFEKVLADKVHVDLNYMSTQTGPHRDDIMFMI-NGIDARRFGSQGQQRTVALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           +A  +L+ N     PILLLD++ + LD  +R AL   + DI  Q  +T T    F
Sbjct: 287 IAEIKLVKNIINDNPILLLDDVMSELDSSRREALLEEIKDI--QTIITCTGYDDF 339


>gi|114762140|ref|ZP_01441608.1| recombination protein F [Pelagibaca bermudensis HTCC2601]
 gi|114545164|gb|EAU48167.1| recombination protein F [Roseovarius sp. HTCC2601]
          Length = 369

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 128/371 (34%), Positives = 199/371 (53%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    +  DA+     G NG GKTN++EA+S LSPGRG RRAS  ++
Sbjct: 4   LHLSSLTLSHFRSHKRAAVEVDARPVAIFGPNGAGKTNLIEAVSLLSPGRGMRRASAQEM 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           TR      +   A + G EG ++IS++ E+   R V   +I+         L +  R+ W
Sbjct: 64  TRRPEALGWKIGAVLHGPEGASEISVRSESGGSRQV---EIDGKPA-PQTALGRIARVLW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+PSMDR++      RRRFLDRM  +  P H    + +E+ MR RNRLL E   D+ W +
Sbjct: 120 LIPSMDRLWIEAPEGRRRFLDRMTLSFFPDHADASLTYEKAMRERNRLLKEQIRDAHWYA 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E QMA+ G  I   R            +   + +FP   L+L        +      +
Sbjct: 180 ALETQMAQSGALIQQNRQA--ALARLARAQDGAETSFPAADLALVST-----EADIPETE 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+      +GR  D  + RTL+GPHRSDL   +  K +  +  STGEQK +L+ + LA+A
Sbjct: 233 EDLRAVFAEGRFRDMAAGRTLVGPHRSDLYGVFAAKGVPASDCSTGEQKALLISLILANA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  P+LLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L + A+ 
Sbjct: 293 RALAAEIGAPPLLLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFAELGDRAQR 352

Query: 365 MRISNHQALCI 375
           ++++      +
Sbjct: 353 LQVTEEAGQSV 363


>gi|16762489|ref|NP_458106.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143977|ref|NP_807319.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|168818304|ref|ZP_02830304.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|213052918|ref|ZP_03345796.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213581831|ref|ZP_03363657.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213609169|ref|ZP_03368995.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|20978597|sp|Q8Z2N4|RECF_SALTI RecName: Full=DNA replication and repair protein recF
 gi|25300556|pir||AC0958 recF protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16504794|emb|CAD03159.1| recF protein [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29139613|gb|AAO71179.1| recF protein [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|205344501|gb|EDZ31265.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|320088257|emb|CBY98019.1| DNA replication and repair protein recF [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 357

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      + EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E  +A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|149912810|ref|ZP_01901344.1| recombination protein F [Roseobacter sp. AzwK-3b]
 gi|149813216|gb|EDM73042.1| recombination protein F [Roseobacter sp. AzwK-3b]
          Length = 370

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 195/370 (52%), Gaps = 11/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +S FR++   RL  DA+     G NG GKTNILEA+S  SPGRG RRA+  D+
Sbjct: 4   LHISRLTLSHFRSHKGARLDVDARPVAIYGPNGAGKTNILEAVSLFSPGRGLRRAAAQDM 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +     +  +  L ++ +  E   + + R  +I+         L +  R+ W
Sbjct: 64  ARRPEALGWKVTGILHSLHQLHEVELWSE---EGAARQTRIDGKPA-AQTALGRIARVLW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVPSMDR++   +  RRRFLDRM  +  P H    + +E+ MR RNRLL +   D+ W  
Sbjct: 120 LVPSMDRLWIEGTEGRRRFLDRMTLSFRPDHADISLTYEKAMRERNRLLKDQVRDAHWYV 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E Q+AE G  I+  R+  ++ L     +   +  FP   L L        +       
Sbjct: 180 ALERQLAETGAAIHANRLYALDQLRE--AQAQAETAFPAADLDLIST-----EADMPDTP 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            + A+ L + R  D  + RTLIGPHR+DL   Y  K +     STGEQK +LV + LA+A
Sbjct: 233 ADLAEALAESRFRDLAAGRTLIGPHRADLYGVYAAKGVPARDCSTGEQKALLVSLILANA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  P+LLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L + A++
Sbjct: 293 RALARDFGAPPLLLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFSDLGDRAQY 352

Query: 365 MRISNHQALC 374
           + ++    + 
Sbjct: 353 IEVTETDGIS 362


>gi|161506638|ref|YP_001576586.1| recombination protein F [Lactobacillus helveticus DPC 4571]
 gi|172048333|sp|A8YW44|RECF_LACH4 RecName: Full=DNA replication and repair protein recF
 gi|160347627|gb|ABX26301.1| DNA repair and genetic recombination protein [Lactobacillus
           helveticus DPC 4571]
          Length = 375

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 154/376 (40%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    +  FRN   L + FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++
Sbjct: 1   MYLDHFVVQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       +  + G    + + + L     +  + + IN V    + +    L    
Sbjct: 61  IGFGGE-----YTNLLGHVRKSQVDLTLRVLITQKGKKVWINRVEQAKLSKYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +       RRRF+D+    I+  +      + +++  +N  L +       D 
Sbjct: 116 FSPEDLELIKSAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  Q+A +  ++   R + +  LS    +     +    KL++         ++ 
Sbjct: 176 VFLDVLSDQLAGIAAEVIFRRFKFLRYLSHYASDVYAHISLGGEKLAIAYHPSVSTIEAD 235

Query: 241 CALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
             ++E Y K L      + ++     T  GPHR D+      K   + + S G+Q+ + +
Sbjct: 236 DTVEEIYQKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHL-YASQGQQRSIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD      
Sbjct: 295 SVKLAEIQLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +   + + + 
Sbjct: 354 EIIKKPRVYHMQSGKI 369


>gi|56415709|ref|YP_152784.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364637|ref|YP_002144274.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|81678054|sp|Q5PKU8|RECF_SALPA RecName: Full=DNA replication and repair protein recF
 gi|226737832|sp|B5BIL2|RECF_SALPK RecName: Full=DNA replication and repair protein recF
 gi|56129966|gb|AAV79472.1| recF protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. ATCC 9150]
 gi|197096114|emb|CAR61710.1| recF protein [Salmonella enterica subsp. enterica serovar Paratyphi
           A str. AKU_12601]
          Length = 357

 Score =  312 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      + EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEEREMSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E  +A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|161616953|ref|YP_001590918.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|168464834|ref|ZP_02698726.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|189039639|sp|A9MX74|RECF_SALPB RecName: Full=DNA replication and repair protein recF
 gi|161366317|gb|ABX70085.1| hypothetical protein SPAB_04774 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|195632488|gb|EDX50972.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 357

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      + EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEVGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E  +A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|153933867|ref|YP_001382414.1| recombination protein F [Clostridium botulinum A str. ATCC 19397]
 gi|153935303|ref|YP_001385966.1| recombination protein F [Clostridium botulinum A str. Hall]
 gi|168181119|ref|ZP_02615783.1| DNA replication and repair protein RecF [Clostridium botulinum NCTC
           2916]
 gi|226947226|ref|YP_002802317.1| DNA replication and repair protein RecF [Clostridium botulinum A2
           str. Kyoto]
 gi|166220704|sp|A7FPF3|RECF_CLOB1 RecName: Full=DNA replication and repair protein recF
 gi|254790469|sp|C1FPH6|RECF_CLOBJ RecName: Full=DNA replication and repair protein recF
 gi|152929911|gb|ABS35411.1| DNA replication and repair protein RecF [Clostridium botulinum A
           str. ATCC 19397]
 gi|152931217|gb|ABS36716.1| DNA replication and repair protein RecF [Clostridium botulinum A
           str. Hall]
 gi|182668165|gb|EDT80144.1| DNA replication and repair protein RecF [Clostridium botulinum NCTC
           2916]
 gi|226842327|gb|ACO84993.1| DNA replication and repair protein RecF [Clostridium botulinum A2
           str. Kyoto]
          Length = 364

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 164/372 (44%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+
Sbjct: 1   MYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   + ++  T+   E ++   DI+I          + + +N + I+ + EL  +L + 
Sbjct: 61  IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182
              P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +  
Sbjct: 116 MFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKINDI 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+++ G  I   R + ++ L+ +     +K       ++     + K    F  
Sbjct: 176 IDIYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            ++E    L   RK D     T IGPHR D  V   +    I  GS G+Q+  ++ +  A
Sbjct: 233 AEKELLIVLKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361
              +I N  G  P+LLLD++ + LD +++  +   +  I  Q  +T T     D   +  
Sbjct: 292 SLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLDKK 349

Query: 362 -AKFMRISNHQA 372
            ++   ++N + 
Sbjct: 350 QSQLYLVNNGKI 361


>gi|187777364|ref|ZP_02993837.1| hypothetical protein CLOSPO_00920 [Clostridium sporogenes ATCC
           15579]
 gi|187774292|gb|EDU38094.1| hypothetical protein CLOSPO_00920 [Clostridium sporogenes ATCC
           15579]
          Length = 364

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 164/372 (44%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+
Sbjct: 1   MYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   + ++  T+   E ++   DI+I          + + +N + I+ + EL  +L + 
Sbjct: 61  IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182
              P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +  
Sbjct: 116 MFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKINDI 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+++ G  I   R + ++ L+ +     +K       ++     + K    F  
Sbjct: 176 IDIYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            ++E    L   RK D     T IGPHR D  V   +    I  GS G+Q+  ++ +  A
Sbjct: 233 AEKELLIALKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361
              +I N  G  P+LLLD++ + LD +++  +   +  I  Q  +T T     D   +  
Sbjct: 292 SLEIIKNIIGEYPVLLLDDVLSELDSNRQRFVLNSIDKI--QTIITCTGIEEIDKYLDKK 349

Query: 362 -AKFMRISNHQA 372
            ++   ++N + 
Sbjct: 350 QSQLYLVNNGKI 361


>gi|313122779|ref|YP_004033038.1| DNA replication and repair protein recf [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279342|gb|ADQ60061.1| DNA replication and repair protein recF [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 381

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 155/377 (41%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +     S FRN A L L FD    +F+G+N  GKTN+LEAI FL+  R  R ++  ++
Sbjct: 1   MYLGRFKQSGFRNLALLDLEFDPHVNVFLGENAQGKTNLLEAIYFLALSRSHRTSNDREM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       FA + G      + I L     +  +   +N V    + +   HL    
Sbjct: 61  IAFGQD-----FASLAGRVHKRQLDIDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D     I+P +      + ++++ RN  L         D 
Sbjct: 116 FSPEDLELVKGAPSLRRRFMDLEFGQINPEYLYFASQYRQMLQQRNNYLKQLARRQASDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
                +  Q+A    ++   R   +  L+    E  +  +    +L +      K     
Sbjct: 176 VLLGVLTEQVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAKEITAA 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                +K++   +  +    +     T +GPHR DL      K   +   S G+Q+ + +
Sbjct: 236 DQPAQIKQKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKNAHL-FASQGQQRTIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +LI   TG  PILLLD++ + LD++++ AL   +    +Q F+T TD      
Sbjct: 295 SLKLAEIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFI-HGQTQTFITTTDLDGISQ 353

Query: 357 SLNETAKFMRISNHQAL 373
            + +  +   I + Q +
Sbjct: 354 EIVKQPRIFYIHSGQII 370


>gi|322804282|emb|CBZ01832.1| DNA recombination and repair protein RecF [Clostridium botulinum
           H04402 065]
          Length = 364

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+
Sbjct: 1   MYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   + ++  T+   E ++   DI+I          + + +N + I+ + EL  +L + 
Sbjct: 61  IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182
              P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +  
Sbjct: 116 MFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKINDI 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+++ G  I   R + ++ L+ +     +K       ++     + K    F  
Sbjct: 176 IDVYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            ++E        RK D     T IGPHR D  V   +    I  GS G+Q+  ++ +  A
Sbjct: 233 AEKELLMLFKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361
              +I N  G  P+LLLD++ + LD +++  +   +  I  Q  +T T     D   +  
Sbjct: 292 SLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLDKK 349

Query: 362 -AKFMRISNHQA 372
            ++   ++N + 
Sbjct: 350 QSQLYLVNNGKI 361


>gi|37678197|ref|NP_932806.1| recombination protein F [Vibrio vulnificus YJ016]
 gi|51316312|sp|Q7MQJ5|RECF_VIBVY RecName: Full=DNA replication and repair protein recF
 gi|37196936|dbj|BAC92777.1| Recombinational DNA repair ATPase [Vibrio vulnificus YJ016]
          Length = 359

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 80/367 (21%), Positives = 154/367 (41%), Gaps = 14/367 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +         +G NG GKT++LEAI  L  GR F+ A    V
Sbjct: 1   MPLSRLIIQQFRNIKACDIALSPGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSALTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNECDQLFVHGRFLNSDQFELPIGINKQRDGTTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +P        F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTEPAFYDAWGRFKRLNKQRNALLKSAKSYQE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R + +  + S   E + +E  P   + L  +   + +       
Sbjct: 177 YWDKEMARLAELISQWRADYVAQMQSKA-EQLCQEFLPEFHIQLKYYRGWEKETP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L +  + D     T+ GP+++DL +   +  +     S G+ K+++  + LA  
Sbjct: 231 --YQQILEENFERDQTLGYTVSGPNKADLRIKVNNTPVEDVL-SRGQLKLMVCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   + L+D+ ++ LD  +R  L   +   G+Q+F++  T+  + D  +++ +
Sbjct: 288 QHLTEKTGKQCVYLIDDFASELDSQRRKRLADCLKQTGAQVFVSSITENQISDMRDDSGR 347

Query: 364 FMRISNH 370
              +   
Sbjct: 348 LFNVEQG 354


>gi|317046241|ref|YP_004113889.1| DNA replication and repair protein RecF [Pantoea sp. At-9b]
 gi|316947858|gb|ADU67333.1| DNA replication and repair protein RecF [Pantoea sp. At-9b]
          Length = 361

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 152/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEQADLSLAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P+F     R+EG E    + +      +  VR   I+      V EL + L +  
Sbjct: 61  IRHDQPAF-VLHGRIEGSERELAVGLTKNRAGESKVR---IDGSDGHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR ++D   F   P       +  RL++ RN  L +     S   
Sbjct: 117 ITPEGFTLLNGGPKYRRAYIDWGCFHAAPGFFNAWSNLRRLLKQRNAALRQ-VTRYSQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E  +A+ S I      +  P  +L+ +       +       
Sbjct: 176 PWDQELVPLAEQISAWRAEYSDAICSEITATCA-QFLPEFELAFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 229 -DYGELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++ ++G   + L+D+ ++ LD+ +R  L   +    +Q+F++    + V D  +E  K
Sbjct: 287 EYLTRSSGRRCLYLIDDFASELDDVRRRLLAERLKATQAQVFVSAIGVEHVIDMSDEKGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|323493783|ref|ZP_08098901.1| recombination protein F [Vibrio brasiliensis LMG 20546]
 gi|323311917|gb|EGA65063.1| recombination protein F [Vibrio brasiliensis LMG 20546]
          Length = 360

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 147/369 (39%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V
Sbjct: 1   MPLSRLIIQQFRNIKACDIELSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNDCNELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +         F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRSFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R   I  +     E  Q    P  ++ L  +     D       
Sbjct: 177 YWDQEMARLAENISQWRATYIEQMKVKAEEICQA-FLPEFEIQLKYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y   L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YQDILEKNFERDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  TD  + D  +E  +
Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDSQIADMRDENGR 347

Query: 364 FMRISNHQA 372
              + +   
Sbjct: 348 MFHVEHGTI 356


>gi|167548875|ref|ZP_02342634.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205325712|gb|EDZ13551.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 357

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      + EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E  +A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFFLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|308188763|ref|YP_003932894.1| DNA replication and repair protein recF [Pantoea vagans C9-1]
 gi|308059273|gb|ADO11445.1| DNA replication and repair protein recF [Pantoea vagans C9-1]
          Length = 361

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 149/369 (40%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEQADLQLAPGFNFLVGVNGSGKTSVLEAIHTLGHGRSFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R+E  E    + +      D  VR   I+      V EL + L +  
Sbjct: 61  IRHDEAAF-VLHGRLESKEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR ++D   F   P       +  RL++ RN  L +     S   
Sbjct: 117 ITPEGFSLLNGGPKYRRAYVDWGCFHNTPGFFNAWNNMRRLLKQRNAALRQ-VSRYSQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E   A+S+ I      +  P  +L  +       +       
Sbjct: 176 PWDQELVPLAEQISQWRAEYSAAISAEITATCA-QFLPEFELRFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D     T  GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 229 -DYAELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363
             +++ +G   I L+D+ ++ LDE +R  L   +    +Q+F++      V D  +E  K
Sbjct: 287 EFLTSQSGRRCIYLIDDFASELDESRRRLLADRLKATQAQVFVSAISAGHVIDMTDEKGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|290548|gb|AAA62051.1| recF (CG Site No. 308) [Escherichia coli]
          Length = 357

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN    +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAXRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|89052494|ref|YP_507945.1| recombination protein F [Jannaschia sp. CCS1]
 gi|88862043|gb|ABD52920.1| DNA replication and repair protein RecF [Jannaschia sp. CCS1]
          Length = 375

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 197/368 (53%), Gaps = 13/368 (3%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +++ +  L +S FR++   R+  D +     G NG GKTN++EA+S LSPGRG RRA+ 
Sbjct: 11  VSKVFVSSLALSHFRSHRRARMELDGRPVALFGPNGAGKTNLMEAVSLLSPGRGLRRAAA 70

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            ++ R      +   A + G     DI++  E       R  Q++      +  L + LR
Sbjct: 71  EEIIRRPEAIGWKVSAEISGPSINHDITLTAEPG---QPRTTQVDGKTAPQIA-LARLLR 126

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I WLVPS DR++S  +  RRRFLDR+  +  P H   ++ +E+ MR RNRLL +   D +
Sbjct: 127 IVWLVPSQDRLWSEGAEGRRRFLDRITLSFLPDHADAVLTYEKAMRERNRLLRDDARDPA 186

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           W  ++EAQMA+  V+I   R + +  +S    +      FP   L       G   +  C
Sbjct: 187 WYRALEAQMADAAVRIVNGRDDALTRIS--AAQNGAATAFPAADL-------GIETEHPC 237

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
              +++ +     R  D  + RTLIGPHR+D+   Y DK +     STGEQK +L+ + L
Sbjct: 238 QTVDDFIQAFEGSRPRDLAAGRTLIGPHRADMSAIYRDKGVPAKQCSTGEQKALLISLIL 297

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           ++AR +   TG AP++LLDE++AHLD  +R ALF  +  + +Q +MTGT   +F  L + 
Sbjct: 298 SNARALKAETGTAPLVLLDEVAAHLDAGRRAALFDEICALEAQAWMTGTGPELFAELGDR 357

Query: 362 AKFMRISN 369
           A+   I+ 
Sbjct: 358 AQHFEITE 365


>gi|310816809|ref|YP_003964773.1| recombination protein F [Ketogulonicigenium vulgare Y25]
 gi|308755544|gb|ADO43473.1| recombination protein F [Ketogulonicigenium vulgare Y25]
          Length = 370

 Score =  312 bits (799), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 135/370 (36%), Positives = 197/370 (53%), Gaps = 12/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L FD +   FVG NG GKTN++EAIS LSPGRG RRA   D+
Sbjct: 4   LALNALKLSHFRSHKRAELAFDGRPVAFVGSNGAGKTNLIEAISLLSPGRGLRRAVTEDL 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A +  +    ++       + R+VR   I+D     V  L   + I W
Sbjct: 64  ARRPESVGWKVQASLTRLHESHEVETAAAPGESRTVR---IDDKPAPQVA-LAAIMPIVW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR++   +  RRRFLDRMV +  P H    +++E+ MR RNRLL +G  D+ W +
Sbjct: 120 LVPAMDRLWIEAAEGRRRFLDRMVMSFAPDHAALALEYEKAMRQRNRLLKDGVRDAHWYA 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +IE  MA+ G ++   R+ +I  L     +      FP   L+LT       D++     
Sbjct: 180 AIERIMAKSGAEMTRNRLALIERLRD--AQASADTAFPAADLTLTSEGPSPVDEA----- 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R  D ++ R+L+GPHR+DL   +  K +  A  STGEQK +L+ + LA+ 
Sbjct: 233 -ALADALEGSRPRDLLAGRSLVGPHRADLSAIWQAKGMIAADCSTGEQKALLISLVLANG 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G APILLLDE+SAHLD  +R AL+  +T +  Q FMTGT+  +F  L   A+ 
Sbjct: 292 RALAEDRGVAPILLLDEVSAHLDAARRAALYDEITAMAGQTFMTGTEVQLFAGLGPRAQG 351

Query: 365 MRISNHQALC 374
             +    A  
Sbjct: 352 FAVEEGPAGS 361


>gi|163738136|ref|ZP_02145552.1| DNA replication and repair protein RecF [Phaeobacter gallaeciensis
           BS107]
 gi|161388752|gb|EDQ13105.1| DNA replication and repair protein RecF [Phaeobacter gallaeciensis
           BS107]
          Length = 365

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 130/366 (35%), Positives = 196/366 (53%), Gaps = 11/366 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L  D +     G NG GKTNILEA+S  SPGRG RRAS AD+
Sbjct: 2   LALTTLTLSHFRSHLRADLHLDGRPVAIHGANGAGKTNILEAVSLFSPGRGLRRASAADM 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +    ++       ++    E       R ++I++     +D L +  R+ W
Sbjct: 62  ARRPEALGWKLKGQLTAARQSYEVETWSEAG---KARQVKIDNKAASQID-LGQICRVVW 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+P+MDR++   +  RRRFLDR+V + DP H    + +E+ MR RNRLL E   D++W  
Sbjct: 118 LIPAMDRLWIEAAEGRRRFLDRIVLSFDPGHAEATLLYEKAMRERNRLLKEQIRDAAWYR 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +E QMAE G +I+ AR   ++ L   + +   +  FP  +L L      + D       
Sbjct: 178 VLETQMAESGHRIHAARTAAVDRLR--MAQEAAETAFPAAELEL-----IQSDGGLPDTA 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +  +   +GR  D  + RTL+GPHR+DL+  Y  K +     STGEQK +LV + LA+A
Sbjct: 231 ADLQEAFEEGRFRDLAAGRTLLGPHRTDLLGTYAAKGVPARDCSTGEQKALLVSLILANA 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R +    G  PILLLDE+SAHLD  +R AL++ +  +G+Q +MTGT   +FD     A+ 
Sbjct: 291 RALIAEGGAPPILLLDEVSAHLDVIRRAALYQEIVTLGAQAWMTGTGPELFDEFEGRAQM 350

Query: 365 MRISNH 370
             + + 
Sbjct: 351 FTVEDG 356


>gi|304398066|ref|ZP_07379941.1| DNA replication and repair protein RecF [Pantoea sp. aB]
 gi|304354352|gb|EFM18724.1| DNA replication and repair protein RecF [Pantoea sp. aB]
          Length = 361

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 148/369 (40%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEQADLQLAPGFNFLVGANGSGKTSVLEAIHTLGHGRSFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R+E  E    + +      D  VR   I+      V EL + L +  
Sbjct: 61  IRHDEAAF-VLHGRLENAEREISVGLTKNRAGDSKVR---IDGSDGHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR ++D   F   P       +  RL++ RN  L +     S   
Sbjct: 117 ITPEGFSLLNGGPKYRRAYVDWGCFHNTPGFFNAWNNMRRLLKQRNAALRQ-VSRYSQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E   A+S+ I      +  P  +L  +       +       
Sbjct: 176 PWDQELVPLAEQISQWRAEYSAAISAEITATCS-QFLPEFELRFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 229 -DYGELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAK 363
             +++ +G   I L+D+ ++ LDE +R  L   +    +Q+F++      V D  +E  K
Sbjct: 287 EFLTSQSGRRCIYLIDDFASELDESRRRLLADRLKATQAQVFVSAISAGHVIDMTDEKGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|170759251|ref|YP_001785339.1| recombination protein F [Clostridium botulinum A3 str. Loch Maree]
 gi|226737781|sp|B1L1K9|RECF_CLOBM RecName: Full=DNA replication and repair protein recF
 gi|169406240|gb|ACA54651.1| DNA replication and repair protein RecF [Clostridium botulinum A3
           str. Loch Maree]
          Length = 364

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 163/375 (43%), Gaps = 15/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+
Sbjct: 1   MYIKSVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   + ++  T+   E ++   DI+I          + + +N + I+ + EL  +L + 
Sbjct: 61  IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182
              P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +  
Sbjct: 116 MFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNRINDI 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+++ G  I   R + ++ L+ +     +K       ++     + K    F  
Sbjct: 176 IDVYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            ++E        RK D     T IGPHR D  V   +    I  GS G+Q+  ++ +  A
Sbjct: 233 AEKELLMLFKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361
              +I N  G  P LLLD++ + LD +++  +   +  I  Q  +T T     D   +  
Sbjct: 292 SLEIIKNIIGEYPALLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLDKK 349

Query: 362 -AKFMRISNHQALCI 375
            ++   ++N +   +
Sbjct: 350 QSQLYLVNNGKIKKV 364


>gi|254507276|ref|ZP_05119412.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           16]
 gi|219549736|gb|EED26725.1| DNA replication and repair protein RecF [Vibrio parahaemolyticus
           16]
          Length = 360

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 147/369 (39%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLTRLIIKQFRNIEACDINLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNDCNELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +         F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R   +  + S   E  Q    P   + L  +     +       
Sbjct: 177 YWDQEMARLAENISQWRSVYVEQMKSKAEEICQ-TFLPEFDIQLKYYRGWDKETP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YQQILEKNFERDQALGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   + L+D+ ++ LD  +R  L   + + G+Q+F++  T   + D  +E  K
Sbjct: 288 QHLTEMTGKQCVYLIDDFASELDSQRRERLADCLKETGAQVFVSSITQSQIADMADENGK 347

Query: 364 FMRISNHQA 372
              + +   
Sbjct: 348 MFHVEHGTI 356


>gi|50123357|ref|YP_052524.1| recombination protein F [Pectobacterium atrosepticum SCRI1043]
 gi|81693014|sp|Q6CYR6|RECF_ERWCT RecName: Full=DNA replication and repair protein recF
 gi|49613883|emb|CAG77335.1| DNA replication and repair protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 361

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 152/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P F     R++G E    + +    + D  VR   I+      V EL + L I  
Sbjct: 61  IRHDQPEF-VLHGRIDGTETERAVGLSKNRQGDSKVR---IDGSDGHKVAELAQLLPIQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL R RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFAAWSNMKRLQRQRNAALRQ-VSHYGQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R +   A+++ I      +  P   LS +       +       
Sbjct: 176 AWDQELVPLAERISEWRAQYSAAIANDIAATC-TQFLPEFSLSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D M   T +GPH++D  +     A+     S G+ K+++  + LA  
Sbjct: 229 -EYAELLERQFERDRMLGYTALGPHKADFRIRTSGVAVEDML-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
             ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++        D + E  K
Sbjct: 287 EFLTRQNGLRCLYLIDDFASELDSTRRRLLAERLKATHAQVFVSAVSAEQIEDMIGEKGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|238783050|ref|ZP_04627077.1| DNA replication and repair protein recF [Yersinia bercovieri ATCC
           43970]
 gi|238716051|gb|EEQ08036.1| DNA replication and repair protein recF [Yersinia bercovieri ATCC
           43970]
          Length = 361

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  + + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHDCAEF-VLHGRVDVNERESSVGLSKSRQGDSKVR---IDGTDGHKVAELAQMLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 176 PWDQEIVPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T IGPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -DYGELLERQFERDRALTYTAIGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 347 MFRVEHGKI 355


>gi|332084890|gb|EGI90073.1| DNA replication and repair protein recF [Shigella boydii 5216-82]
          Length = 357

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLIKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -KYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|116513232|ref|YP_812138.1| recombination protein F [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275997|sp|Q04CX2|RECF_LACDB RecName: Full=DNA replication and repair protein recF
 gi|116092547|gb|ABJ57700.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 381

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 155/377 (41%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +     S FRN A L L FD    +F+G+N  GKTN+LEAI FL+  R  R ++  ++
Sbjct: 1   MYLSRFKQSGFRNLAPLNLEFDPHVNVFLGENAQGKTNLLEAIYFLAISRSHRTSNDREM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       FA + G      + + L     +  +   +N V    + +   HL    
Sbjct: 61  IAFGQD-----FASLAGRVHKRQLDLDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D     I+P +      + +L++ RN  L         D 
Sbjct: 116 FSPEDMELVKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
                +  Q+A    ++   R   +  L+    E  +  +    +L +      K     
Sbjct: 176 VLLGVLTEQVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAKEITAA 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                +K++   +  +    +     T +GPHR DL      K   +   S G+Q+ + +
Sbjct: 236 DQPAQIKQKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKNAHL-FASQGQQRTIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + L+  +LI   TG  PILLLD++ + LD++++ AL   +    +Q F+T TD      
Sbjct: 295 SLKLSEIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFI-HGQTQTFITTTDLDSISQ 353

Query: 357 SLNETAKFMRISNHQAL 373
            + +  +   I + Q +
Sbjct: 354 EIVKQPRIFYIHSGQII 370


>gi|238754006|ref|ZP_04615365.1| DNA replication and repair protein recF [Yersinia ruckeri ATCC
           29473]
 gi|238707758|gb|EEQ00117.1| DNA replication and repair protein recF [Yersinia ruckeri ATCC
           29473]
          Length = 361

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLAPAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P F     RV+  E    + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHDCPEF-VLHGRVDSGERELSVGLSKSRQGDSKVR---IDGSDGHKVAELAQMLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 176 PWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 347 MFRVEHGKI 355


>gi|238797843|ref|ZP_04641335.1| DNA replication and repair protein recF [Yersinia mollaretii ATCC
           43969]
 gi|238718259|gb|EEQ10083.1| DNA replication and repair protein recF [Yersinia mollaretii ATCC
           43969]
          Length = 361

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  + + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHDCAEF-VLHGRVDVNERESSVGLSKSRQGDSKVR---IDGTDGHKVAELAQMLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 176 PWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T IGPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -DYGELLERQFERDRALTYTAIGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVTDMVGEKGK 346

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 347 MFRVEHGKI 355


>gi|37524035|ref|NP_927379.1| recombination protein F [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|51316319|sp|Q7NAD1|RECF_PHOLL RecName: Full=DNA replication and repair protein recF
 gi|36783458|emb|CAE12298.1| DNA replication and repair protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 363

 Score =  311 bits (798), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 156/369 (42%), Gaps = 13/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN A+  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MTLTRLLIRDFRNIAAADLPLATGFNFLVGSNGSGKTSVLEAIYTLGHGRSFRSIQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G   F     R+   E   + SI L    +   + ++I+      + EL K L +  
Sbjct: 61  ILHGCDEF-VLHGRLGQQENERERSIGLSKNRNGDSK-VRIDGSDGGKIAELAKMLPMQL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR F+D   F  +PR     ++ +RL++ RN  L +     S   
Sbjct: 119 ITPEGFTLLNGGPKYRRAFIDWGCFHNEPRFFSAWVNLKRLLKQRNAALRQ-VTRYSQIR 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +IN  R E +  ++  I     K+  P   LS +       +       
Sbjct: 178 PWDQELIPLANQINQWRGEYVTNITQDITNTC-KQFLPEFTLSFSFQQGWDKES------ 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D     T  GPH++DL +      +     S G+ K+++  + LA  
Sbjct: 231 -DYAELLERQFERDRTLTYTASGPHKADLRIRAEGTPVEDML-SRGQLKLLMCALRLAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
              +  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  +     D L+  +K
Sbjct: 289 EYFTRQSGQQCLYLLDDFASELDTSRRQLLAARLKSTQAQVFVSAINPDQITDMLDGNSK 348

Query: 364 FMRISNHQA 372
             R+ N + 
Sbjct: 349 MFRVENGKI 357


>gi|85705683|ref|ZP_01036780.1| recombination protein F [Roseovarius sp. 217]
 gi|85669673|gb|EAQ24537.1| recombination protein F [Roseovarius sp. 217]
          Length = 369

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 201/368 (54%), Gaps = 11/368 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +S FR++ + RL  DA+     G NG GKTN++EA+S LSPGRG RRA+  D+ R
Sbjct: 6   LSELTLSHFRSHKAARLSLDARPVAIHGPNGAGKTNLIEAVSLLSPGRGLRRAAAQDMAR 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 +     +  +  + ++    E     + R L+I+      +  L +  R+ WLV
Sbjct: 66  RPEALGWKITTILHSLHQVHEVETFAE---GSAARQLRIDGKTATQIA-LGRIARVLWLV 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P+MDR++   +  RRRFLDRM  +  P H    + +E+ MR RNRLL +   D+ W  ++
Sbjct: 122 PAMDRLWIEGAEGRRRFLDRMTMSFVPSHAEATLAYEKAMRERNRLLKDQVRDAQWYLAL 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E Q+A+ G +I+  R   +  ++    +   +  FP  +L LT     + +       E+
Sbjct: 182 ERQLADAGAEIHANRQHALALIAG--AQMQAETAFPTAELELT-----QTEGEMPETAED 234

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
             + L + R  D ++ RTLIGPHR+DL   Y  K +  A  STGEQK +LV + LA+AR 
Sbjct: 235 LRQALAESRFRDLVAGRTLIGPHRADLYGVYAAKGVPAADCSTGEQKALLVSLILANARA 294

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           ++   G  P+LLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L + A+ + 
Sbjct: 295 LARDFGAPPLLLLDEVAAHLDATRRAALYDEICALGAQAWMTGTGPELFSELGDRAQHIH 354

Query: 367 ISNHQALC 374
           +++   + 
Sbjct: 355 VTDTAGIS 362


>gi|238787826|ref|ZP_04631623.1| DNA replication and repair protein recF [Yersinia frederiksenii
           ATCC 33641]
 gi|238724169|gb|EEQ15812.1| DNA replication and repair protein recF [Yersinia frederiksenii
           ATCC 33641]
          Length = 361

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  + + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHECAEF-VLHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVTDMVGEKGK 346

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 347 MFRVEHGKI 355


>gi|204928659|ref|ZP_03219858.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204322092|gb|EDZ07290.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 357

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      + EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E   A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSIAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|82546036|ref|YP_409983.1| recombination protein F [Shigella boydii Sb227]
 gi|97180953|sp|Q31UV3|RECF_SHIBS RecName: Full=DNA replication and repair protein recF
 gi|81247447|gb|ABB68155.1| RecF [Shigella boydii Sb227]
 gi|320185535|gb|EFW60301.1| DNA recombination and repair protein RecF [Shigella flexneri CDC
           796-83]
 gi|332089378|gb|EGI94482.1| DNA replication and repair protein recF [Shigella boydii 3594-74]
          Length = 357

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 156/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELIPLVEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|291615641|ref|YP_003518383.1| RecF [Pantoea ananatis LMG 20103]
 gi|291150671|gb|ADD75255.1| RecF [Pantoea ananatis LMG 20103]
 gi|327395907|dbj|BAK13329.1| DNA replication and repair protein RecF [Pantoea ananatis AJ13355]
          Length = 361

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 148/369 (40%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEQADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R+EG E    + +      +  VR   I+      V EL + L +  
Sbjct: 61  IRHDQAAF-VLHGRLEGQEREFSVGLSKNRAGESKVR---IDGSDGHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR ++D   F   P       +  RL++ RN  L +     S   
Sbjct: 117 ITPEGFTLLNGGPKYRRAYVDWGCFHNTPGFFNAWSNLRRLLKQRNAALRQ-VTRYSQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R +   A+S+ I+     +  P   L  +       +       
Sbjct: 176 PWDQELVPLAEQISQWRADYSAAISAEIV-TTCAQFLPEFDLRFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D     T  GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 229 -DYAELLERNFERDRALTYTASGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    +Q+F++        D  +E  K
Sbjct: 287 EFLTRQSGRRCVYLIDDFASELDDSRRRLLAERLKATQAQVFVSAISSEHVIDMTDEKGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|92115636|ref|YP_575365.1| recombination protein F [Nitrobacter hamburgensis X14]
 gi|91798530|gb|ABE60905.1| DNA replication and repair protein RecF [Nitrobacter hamburgensis
           X14]
          Length = 379

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 140/371 (37%), Positives = 207/371 (55%), Gaps = 4/371 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I+ L+++ FRNY +  L   +   + VG NG GKTN LEAIS LSPGRG RRA+  +V 
Sbjct: 5   RIRRLSLTHFRNYRAAALETRSDVVVLVGPNGAGKTNCLEAISLLSPGRGLRRATREEVA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIRVVDELNKHLRI 122
                  ++  A VEG  GLA +   ++        S R  +I+            HLR+
Sbjct: 65  DHRGDGSWAVSAEVEGALGLATLGTGIDAPGSDAASSGRRCRIDREPAGSAAAFGDHLRM 124

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL PSMD +F G + ERRRF DR+V AID  H  R+   ER +R RNRLL     D  W
Sbjct: 125 VWLTPSMDGLFGGAASERRRFFDRLVLAIDSDHSGRVSALERSLRSRNRLLETRNSDDHW 184

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
           C ++E Q AEL V +   R + +  L++ +        FP  ++ L G+++     +   
Sbjct: 185 CDAVERQTAELAVAVAAMRAQTVTRLAAALEARGAASAFPSARIGLDGWMENALLTEPAT 244

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+++ Y + L   R  D+ + RTL GPH +DL V Y  K++     STGEQK +L+G+ L
Sbjct: 245 AVEDRYREILRANRARDAAAGRTLDGPHLTDLEVIYAPKSMPARDASTGEQKALLIGLVL 304

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHA L++  TG AP+LLLDE+ AHLD D+R ALF  +  +G+Q++M+G D + F ++   
Sbjct: 305 AHAGLVAEMTGIAPLLLLDEVVAHLDPDRRGALFGELKGLGAQVWMSGADPAAFANVGAG 364

Query: 362 AKFMRISNHQA 372
           ++   +   + 
Sbjct: 365 SEIFDVDAGRI 375


>gi|150260970|ref|ZP_01917698.1| DNA metabolism protein [Yersinia pestis CA88-4125]
 gi|161484720|ref|NP_671402.2| recombination protein F [Yersinia pestis KIM 10]
 gi|161511283|ref|NP_995265.2| recombination protein F [Yersinia pestis biovar Microtus str.
           91001]
 gi|161760551|ref|YP_072416.2| recombination protein F [Yersinia pseudotuberculosis IP 32953]
 gi|162421418|ref|YP_001608446.1| recombination protein F [Yersinia pestis Angola]
 gi|165926115|ref|ZP_02221947.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936903|ref|ZP_02225469.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009709|ref|ZP_02230607.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213283|ref|ZP_02239318.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167422826|ref|ZP_02314579.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425451|ref|ZP_02317204.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170022265|ref|YP_001718770.1| recombination protein F [Yersinia pseudotuberculosis YPIII]
 gi|218931072|ref|YP_002348947.1| recombination protein F [Yersinia pestis CO92]
 gi|229839802|ref|ZP_04459961.1| gap repair protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229841887|ref|ZP_04462043.1| gap repair protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229896764|ref|ZP_04511927.1| gap repair protein [Yersinia pestis Pestoides A]
 gi|229904652|ref|ZP_04519763.1| gap repair protein [Yersinia pestis Nepal516]
 gi|270488363|ref|ZP_06205437.1| DNA replication and repair protein RecF [Yersinia pestis KIM D27]
 gi|294505623|ref|YP_003569685.1| recombination protein F [Yersinia pestis Z176003]
 gi|20978599|sp|Q8Z9U9|RECF_YERPE RecName: Full=DNA replication and repair protein recF
 gi|97181121|sp|Q663T4|RECF_YERPS RecName: Full=DNA replication and repair protein recF
 gi|226737852|sp|A9R5R3|RECF_YERPG RecName: Full=DNA replication and repair protein recF
 gi|226737853|sp|B1JGD5|RECF_YERPY RecName: Full=DNA replication and repair protein recF
 gi|115349683|emb|CAL22664.1| DNA metabolism protein [Yersinia pestis CO92]
 gi|149290378|gb|EDM40455.1| DNA metabolism protein [Yersinia pestis CA88-4125]
 gi|162354233|gb|ABX88181.1| DNA replication and repair protein recF [Yersinia pestis Angola]
 gi|165915145|gb|EDR33756.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921975|gb|EDR39152.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991631|gb|EDR43932.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205581|gb|EDR50061.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958218|gb|EDR55239.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167055465|gb|EDR65258.1| DNA replication and repair protein recF [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169748799|gb|ACA66317.1| DNA replication and repair protein RecF [Yersinia
           pseudotuberculosis YPIII]
 gi|229678770|gb|EEO74875.1| gap repair protein [Yersinia pestis Nepal516]
 gi|229691226|gb|EEO83279.1| gap repair protein [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696168|gb|EEO86215.1| gap repair protein [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229700202|gb|EEO88238.1| gap repair protein [Yersinia pestis Pestoides A]
 gi|262363787|gb|ACY60508.1| recombination protein F [Yersinia pestis D106004]
 gi|262367724|gb|ACY64281.1| recombination protein F [Yersinia pestis D182038]
 gi|270336867|gb|EFA47644.1| DNA replication and repair protein RecF [Yersinia pestis KIM D27]
 gi|294356082|gb|ADE66423.1| recombination protein F [Yersinia pestis Z176003]
 gi|320017425|gb|ADW00997.1| gap repair protein [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 361

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  A + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -DYGELLARQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 347 MFRVEHGKI 355


>gi|323496929|ref|ZP_08101957.1| recombination protein F [Vibrio sinaloensis DSM 21326]
 gi|323318003|gb|EGA70986.1| recombination protein F [Vibrio sinaloensis DSM 21326]
          Length = 360

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 146/369 (39%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLTRLIIKQFRNIEACDINLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + +  L + L +  
Sbjct: 61  IQNDCNELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAHLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +         F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTASSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R   +  + S   E  Q    P   + L  +     D       
Sbjct: 177 YWDQEMARLAENISQWRSIYVEQMKSKAEEICQ-TFLPEFDIQLKYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YQQILEKNFERDQSLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  T   V D  +E  K
Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRERLAECLKETGAQVFVSSITQSQVADMADENGK 347

Query: 364 FMRISNHQA 372
              + +   
Sbjct: 348 MFHVEHGTI 356


>gi|156936080|ref|YP_001439996.1| recombination protein F [Cronobacter sakazakii ATCC BAA-894]
 gi|260595832|ref|YP_003208403.1| recombination protein F [Cronobacter turicensis z3032]
 gi|166220710|sp|A7MMZ8|RECF_ENTS8 RecName: Full=DNA replication and repair protein recF
 gi|156534334|gb|ABU79160.1| hypothetical protein ESA_03974 [Cronobacter sakazakii ATCC BAA-894]
 gi|260215009|emb|CBA26672.1| DNA replication and repair protein recF [Cronobacter turicensis
           z3032]
          Length = 357

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    + +  +   D +VR   I+      V EL + + +  
Sbjct: 61  IRHEQDAFI-LHGRLQGDEREVSVGLTKDRNGDSTVR---IDGSDGHKVAELAQLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +  G    RR FLD   F  +P       + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLGGGPKYRRAFLDWGCFHNEPGFFVAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R     A+++ + +    +  P   L+ +     + +       
Sbjct: 176 PWDRELVPLAEQISQWRASYSEAIANDMADTCA-QFLPEFSLTFSFQRGWEKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L  G + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERGFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L + +    SQ+F++        D  ++ +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLAQRLKATQSQVFVSAISAEHILDMTDKNSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFAVDQGKI 355


>gi|153947001|ref|YP_001403093.1| recombination protein F [Yersinia pseudotuberculosis IP 31758]
 gi|166918727|sp|A7FPB5|RECF_YERP3 RecName: Full=DNA replication and repair protein recF
 gi|152958496|gb|ABS45957.1| DNA replication and repair protein recF [Yersinia
           pseudotuberculosis IP 31758]
          Length = 361

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  A + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 347 MFRVEHGKI 355


>gi|302559663|ref|ZP_07312005.1| RecF protein [Streptomyces griseoflavus Tu4000]
 gi|302477281|gb|EFL40374.1| RecF protein [Streptomyces griseoflavus Tu4000]
          Length = 373

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 165/379 (43%), Gaps = 20/379 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y  + +      T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYPRVEVPLGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGADRAI---VRAQVRQGERQQLVELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALIKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
              D S     +  +A  G ++   R+++I AL  L  +  ++       L+L       
Sbjct: 177 RTLDLSTLDVWDQHLAHAGAELLARRLDLIGALQPLADKAYEQLAPGGGPLTLEYKPSAP 236

Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +  +   L E+    L + RK +     TL+GPHR DL++    +     + S GE   
Sbjct: 237 GEADTREDLFEQLMAALAEARKQEIERGVTLVGPHRDDLLLKL-GRLPAKGYASHGESWS 295

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
             + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   D  
Sbjct: 296 YALALRLASYDLLRAE-GNEPVLVLDDVFAELDTRRRERLAELVA-PGEQVLVTAAVDDD 353

Query: 354 VFDSLNETAKFMRISNHQA 372
           V   L  T     ++    
Sbjct: 354 VPHVLAGT--RFTVAEGTV 370


>gi|238793145|ref|ZP_04636773.1| DNA replication and repair protein recF [Yersinia intermedia ATCC
           29909]
 gi|238727518|gb|EEQ19044.1| DNA replication and repair protein recF [Yersinia intermedia ATCC
           29909]
          Length = 370

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   A     VG NG GKT++LEAI  L  GR FR      V
Sbjct: 10  MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 69

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  + I +    + D  VR   I+      V EL + L +  
Sbjct: 70  IRHECAEF-VLHGRVDVNERESSIGLSKSRQGDSKVR---IDGTDGHKVAELAQMLPMQL 125

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 126 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 184

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 185 PWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 237

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T IGPH++D  +      +     S G+ K+++  + LA  
Sbjct: 238 -DYGELLERQFERDRALTYTAIGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQG 295

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 296 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 355

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 356 MFRVEHGKI 364


>gi|126734080|ref|ZP_01749827.1| DNA replication and repair protein RecF, putative [Roseobacter sp.
           CCS2]
 gi|126716946|gb|EBA13810.1| DNA replication and repair protein RecF, putative [Roseobacter sp.
           CCS2]
          Length = 366

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 133/371 (35%), Positives = 192/371 (51%), Gaps = 15/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    +  DA+     G NG GKTN+LEA S LSPGRG RRA   D+
Sbjct: 4   LALTELTLSHFRSHKRAAITLDARPLAIFGPNGAGKTNVLEAASLLSPGRGLRRAGADDL 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           TR      +   A ++ +    +I    E  + R +R     D        L +  RI W
Sbjct: 64  TRRPEALGWKITAILQSLHQTHEIETWAEAGNPRQLRI----DGKAAPQTALGRIARILW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVPSMDR++   +  RRRFLDR   + +P H   ++ +++ MR RNRLL +   D  W +
Sbjct: 120 LVPSMDRLWIEGAEGRRRFLDRATLSFEPTHAEAVLTYDKAMRERNRLLKDMVRDPHWYT 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +IE QMAE G  I   R   I  L++   +      FP   L+LT         S   + 
Sbjct: 180 AIEGQMAEAGAAIQKNRHRAIAELTT--AQEAATTAFPTAMLTLT---------SAEPIP 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +     L D R  D  + RTLIGPHR+DL   + DK +     STGEQK +L+ + LA+ 
Sbjct: 229 DNLQTALADNRNRDMAAGRTLIGPHRADLDAVFADKGVPAKDCSTGEQKALLISLILANG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  PILLLDE++AHLD  +R AL+  +  +G+Q FMTGT   +F  L   A++
Sbjct: 289 RALARDFGAPPILLLDEVAAHLDAARRAALYDEICSLGAQAFMTGTGAELFAELGRRAQY 348

Query: 365 MRISNHQALCI 375
           + ++      I
Sbjct: 349 VEVTETDGQSI 359


>gi|322617251|gb|EFY14156.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619061|gb|EFY15947.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625128|gb|EFY21956.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630179|gb|EFY26950.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634395|gb|EFY31129.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635280|gb|EFY31995.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642909|gb|EFY39492.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647624|gb|EFY44111.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322650570|gb|EFY46977.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656404|gb|EFY52696.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661584|gb|EFY57807.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322661665|gb|EFY57884.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668221|gb|EFY64379.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672850|gb|EFY68958.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322674969|gb|EFY71055.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683659|gb|EFY79672.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687735|gb|EFY83704.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192050|gb|EFZ77285.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200532|gb|EFZ85610.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204958|gb|EFZ89943.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206701|gb|EFZ91658.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211773|gb|EFZ96606.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218635|gb|EGA03342.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323220036|gb|EGA04506.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224806|gb|EGA09071.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232485|gb|EGA16587.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235260|gb|EGA19345.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241048|gb|EGA25085.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241402|gb|EGA25434.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248633|gb|EGA32563.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252068|gb|EGA35928.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323258628|gb|EGA42291.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262341|gb|EGA45899.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268177|gb|EGA51653.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270591|gb|EGA54036.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 357

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      + EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E   A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSIAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|312882233|ref|ZP_07741979.1| recombination protein F [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370077|gb|EFP97583.1| recombination protein F [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 360

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 153/369 (41%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V
Sbjct: 1   MPLSRLIIQQFRNIKACDIELSAGFNFLIGVNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G    F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNGCDELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +         F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTEGPKHRRAFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTARH-YHELS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R   +  +     +       P   + L+ +   + +       
Sbjct: 177 YWDNEMAVLAENISQWREAYVEQMKKKAQQICGA-FLPEFDIQLSYYRGWEKETP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L +  + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YQEILKNNFERDQSLGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + +++ TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  TD+ + D  +E  K
Sbjct: 288 QHLTDVTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDQQIADMRDENGK 347

Query: 364 FMRISNHQA 372
             R+ +   
Sbjct: 348 MFRVEHGTI 356


>gi|163743746|ref|ZP_02151120.1| recombination protein F [Phaeobacter gallaeciensis 2.10]
 gi|161383007|gb|EDQ07402.1| recombination protein F [Phaeobacter gallaeciensis 2.10]
          Length = 365

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 130/366 (35%), Positives = 195/366 (53%), Gaps = 11/366 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L  D +     G NG GKTNILEA+S  SPGRG RRAS AD+
Sbjct: 2   LALTTLTLSHFRSHLRADLHLDGRPVAIHGANGAGKTNILEAVSLFSPGRGLRRASAADM 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +    ++       ++    E       R ++I++     +D L +  R+ W
Sbjct: 62  ARRPEALGWKLKGQLTVARQSYEVETWSEAG---KARQVKIDNKAASQID-LGQICRVVW 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+P+MDR++   +  RRRFLDR+V + DP H    + +E+ MR RNRLL E   D+ W  
Sbjct: 118 LIPAMDRLWIEAAEGRRRFLDRIVLSFDPGHAEATLLYEKAMRERNRLLKEQIRDAGWYR 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +E QMAE G +I+ AR   ++ L   + +   +  FP  +L L      + D       
Sbjct: 178 VLETQMAESGHRIHAARTAAVDRLR--MAQEAAETAFPAAELEL-----IQSDGGLPDTA 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +  +   +GR  D  + RTL+GPHR+DL+  Y  K +     STGEQK +LV + LA+A
Sbjct: 231 ADLQEAFEEGRFRDLAAGRTLLGPHRTDLLGTYAAKGVPARDCSTGEQKALLVSLILANA 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R +    G  PILLLDE+SAHLD  +R AL++ +  +G+Q +MTGT   +FD     A+ 
Sbjct: 291 RALIAEGGAPPILLLDEVSAHLDVIRRAALYQEIVTLGAQAWMTGTGPELFDEFEGRAQM 350

Query: 365 MRISNH 370
             + + 
Sbjct: 351 FTVEDG 356


>gi|295425412|ref|ZP_06818110.1| recombination protein F [Lactobacillus amylolyticus DSM 11664]
 gi|295064914|gb|EFG55824.1| recombination protein F [Lactobacillus amylolyticus DSM 11664]
          Length = 375

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 157/376 (41%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    +  +RN   +   FD+   IF+G N  GKTN+LEAI FL+  R  R +S  ++
Sbjct: 1   MYLDHFIVQNYRNLEKIDTNFDSNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTSSDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+      +A + G    + + + L     +  + + IN V    + +    L    
Sbjct: 61  IHFGND-----YANLMGHVHKSQVDLDLRVLITKKGKKVWINRVEQAKLSKYVGQLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D+    I+  +      + +++  +N  L +       D 
Sbjct: 116 FSPEDLELIKGAPALRRRFMDQEFGQINAEYLYFASKYRQVLFQKNNYLKQLAKGQAKDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK---FD 237
            +   +  Q+A +  ++   R + +  LS    +  +  +    KL++           D
Sbjct: 176 IFLDVLSDQLAGIAAEVISRRFKFLRYLSHSASDAYEHISLASEKLAIAYHPSVSNITGD 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +   +  +        ++M+     TL GPHR D+      K   + + S G+Q+ + +
Sbjct: 236 DNTETIYHKVLNNFQKTKEMEIRKGTTLSGPHRDDIEFKLDGKDAHL-YASQGQQRSIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            I LA  +L+ + T   P+LLLD++ + LD  ++ AL   +    +Q F+T TD      
Sbjct: 295 SIKLAEIQLVHHLTDEYPLLLLDDVMSELDHGRQRALLNYI-HGKTQTFITTTDLEGISW 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +   I + + 
Sbjct: 354 EIIKQPRIYHIQSGKI 369


>gi|300721092|ref|YP_003710360.1| gap repair protein [Xenorhabdus nematophila ATCC 19061]
 gi|297627577|emb|CBJ88096.1| gap repair protein with nucleoside triP hydrolase domain, part of
           RecFOR complex that targets RecA to ssDNA-dsDNA junction
           [Xenorhabdus nematophila ATCC 19061]
          Length = 363

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 160/369 (43%), Gaps = 13/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN A+  L         VG NG GKT+ILEAI  L  GR FR      V
Sbjct: 1   MILSRLLIRDFRNIANADLPLATGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSIQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     R++       +S+ L  ++ +    ++I+      + EL K L +  
Sbjct: 61  IRHDCEEFI-LHGRLDQQFHERSLSVGLS-KNRQGGSQVRIDGSDGHKIAELAKMLPMQL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR F+D   F  +PR      + +RL++ RN  L +     +   
Sbjct: 119 ITPEGFTLLNGGPKYRRAFIDWGCFHNEPRFFMAWGNLKRLLKQRNAALRQ-VTRYNQIQ 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I+  R E I  +S  I E   K+  P   LS++       +       
Sbjct: 178 HWDRELAPLATEISQWRAEYIAGISEDI-ERTCKQFLPEFTLSISFQQGWDKES------ 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D        S G+ K+++  + LA  
Sbjct: 231 -EYAELLARQFERDRSLTYTASGPHKADLRIR-ADGTPVEDMLSRGQLKLLMCALRLAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
              +  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  T   V D ++  ++
Sbjct: 289 EYFTRQSGQKCLYLLDDFASELDAGRRQLLAERLKSTQAQVFVSAITSGQVTDMIDVNSR 348

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 349 MFRVEDGKI 357


>gi|325685103|gb|EGD27234.1| recombination protein F [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 381

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 154/377 (40%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +     S FRN A L L FD    +F+G+N  GKTN+LEAI FL+  R  R ++  ++
Sbjct: 1   MYLGRFKQSGFRNLALLDLEFDPHVNVFLGENAQGKTNLLEAIYFLALSRSHRTSNDREM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       FA + G      + + L     +  +   +N V    + +   HL    
Sbjct: 61  IAFGQD-----FASLAGRVHKRQLDLDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D     I+P +      + +L++ RN  L         D 
Sbjct: 116 FSPEDLELVKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
                +  Q+A    ++   R   +  L+    E  +  +    +L +      K     
Sbjct: 176 VLLGVLTEQVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAKEITAA 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                +K++   +  +    +     T +GPHR DL      K   +   S G+Q+ + +
Sbjct: 236 DQPAQIKQKLLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKNAHL-FASQGQQRTIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +LI   TG  PILLLD++ + LD++++ AL   +     Q F+T TD      
Sbjct: 295 SLKLAEIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFI-HGQIQTFITTTDLDGISQ 353

Query: 357 SLNETAKFMRISNHQAL 373
            + +  +   I + Q +
Sbjct: 354 EIVKQPRIFYIHSGQII 370


>gi|256389236|ref|YP_003110800.1| DNA replication and repair protein RecF [Catenulispora acidiphila
           DSM 44928]
 gi|256355462|gb|ACU68959.1| DNA replication and repair protein RecF [Catenulispora acidiphila
           DSM 44928]
          Length = 381

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 101/385 (26%), Positives = 177/385 (45%), Gaps = 24/385 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++++FR+YASL +      T FVG NG GKTN++EAI +++     R A+   +
Sbjct: 1   MRVTHLSLADFRSYASLDVALGGGVTAFVGPNGQGKTNLVEAIGYIATLDSHRVATDQPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+P      A VE       + I+L        R   +N   +    E+   LR   
Sbjct: 61  VRFGAPRAI-VRANVEREGRTQLVEIELNPGGANRAR---LNRNPVPRPREVLGVLRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLVARWPRFAGVRADYDRVLKQRNTLLRTAAMARRNKA 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLTGFLDG 234
              + S   + +  +A  G ++  AR+ +I+ALS L+ + YV+       ++     +  
Sbjct: 177 SGPNISTLDAWDHHLALAGAELVAARLALISALSPLVDKCYVEIAEGGQTRIGYRSTISA 236

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY----CDKAITIAHGSTG 290
           + D +  AL E++   L + R  +     TL+GPHR +++++      D      + S G
Sbjct: 237 EPDPTAAALTEQFMTALGEARANELDRGITLVGPHRDEMVLELTSSSGDNMPARGYASHG 296

Query: 291 EQKVVLVGIFLAHARLISN--TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           E     + + LA   L+ +  + G  P+L+LD++ A LD  +R  L   V+    Q+ +T
Sbjct: 297 ESWSYALALRLAAYDLLRSDGSDGGEPVLILDDVFAELDAKRRRRLAERVSGAD-QVLIT 355

Query: 349 -GTDKSVFDSLNETAKFMRISNHQA 372
              D  V + L    +   +++ Q 
Sbjct: 356 AAVDADVPEQL--IGQKFTVADGQV 378


>gi|16767121|ref|NP_462736.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167992429|ref|ZP_02573527.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168242055|ref|ZP_02666987.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194445873|ref|YP_002043086.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450242|ref|YP_002047869.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|200387747|ref|ZP_03214359.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|20141706|sp|P24900|RECF_SALTY RecName: Full=DNA replication and repair protein recF
 gi|226737830|sp|B4TAU7|RECF_SALHS RecName: Full=DNA replication and repair protein recF
 gi|226737831|sp|B4SYA6|RECF_SALNS RecName: Full=DNA replication and repair protein recF
 gi|16422409|gb|AAL22695.1| gap repair protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194404536|gb|ACF64758.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408546|gb|ACF68765.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|199604845|gb|EDZ03390.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205329422|gb|EDZ16186.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205338680|gb|EDZ25444.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|261248977|emb|CBG26834.1| recF protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267996121|gb|ACY91006.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160369|emb|CBW19894.1| recF protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312914966|dbj|BAJ38940.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225554|gb|EFX50609.1| DNA recombination and repair protein RecF [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323132197|gb|ADX19627.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332990686|gb|AEF09669.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 357

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++  E    I +  + + D  VR   I+      + EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQSEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E  +A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|283836133|ref|ZP_06355874.1| hypothetical protein CIT292_10554 [Citrobacter youngae ATCC 29220]
 gi|291068322|gb|EFE06431.1| DNA replication and repair protein RecF [Citrobacter youngae ATCC
           29220]
          Length = 357

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 152/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    SF     R++G E    I +  +   D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQESF-VLHGRLQGEERETSIGLTKDKLGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    ++  + +  Q +  P   LS +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAQDMADTCQ-QFLPEFSLSFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|83855144|ref|ZP_00948674.1| recombination protein F [Sulfitobacter sp. NAS-14.1]
 gi|83842987|gb|EAP82154.1| recombination protein F [Sulfitobacter sp. NAS-14.1]
          Length = 365

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 199/367 (54%), Gaps = 14/367 (3%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + + +  L +S FR++    +  DA+     G NG GKTNILEA+S LSPGRG RR+S +
Sbjct: 2   SGLYLSQLTLSHFRSHKRAVIHCDARPVSIFGPNGAGKTNILEAVSLLSPGRGLRRSSAS 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D+TR      +   A +  +  + ++ I  E    R VR     D        L +  R+
Sbjct: 62  DMTRRPEALGWKITAHLHSLGQIHEVEIWSEAGAARQVRI----DGKATAQTGLGRIARV 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL+PSMDR++   +  RRRFLDRM  +  P H  + + +E+ MR RNRLL +   + SW
Sbjct: 118 LWLIPSMDRLWIEGAEGRRRFLDRMTLSFLPDHADQSLAYEKAMRERNRLLKDMVREPSW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             ++E QMAE G  I+  RV  + A++    +   +  FP   L L              
Sbjct: 178 YVALEQQMAEAGSAIHANRVAALQAITE--AQAQAETAFPTATLDLIC--------DMPP 227

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E   + L D R  D  + RTLIGPHR+DL   Y  K +     STGEQK +LV + LA
Sbjct: 228 TAEGLRQALADNRMRDLSAGRTLIGPHRADLEGVYAAKDVPARDCSTGEQKALLVSLILA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +AR ++   G  P+LLLDE++AHLD D+R AL+  ++ +G+Q +MTGT + +FD+L   A
Sbjct: 288 NARALAADFGAPPLLLLDEVAAHLDADRRAALYDELSALGAQAWMTGTGEELFDTLGPRA 347

Query: 363 KFMRISN 369
           + + ++ 
Sbjct: 348 QRLEVTE 354


>gi|163733264|ref|ZP_02140708.1| recombination protein F [Roseobacter litoralis Och 149]
 gi|161393799|gb|EDQ18124.1| recombination protein F [Roseobacter litoralis Och 149]
          Length = 366

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 140/363 (38%), Positives = 203/363 (55%), Gaps = 11/363 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L IS FR++   RL+ DA+     G NG GKTN+LEA+S LSPGRG RRAS  D+
Sbjct: 3   LHLTELMISHFRSHRVARLMVDARPVALFGPNGAGKTNVLEAVSLLSPGRGLRRASAQDM 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           TR      +   A+V  +    +I    E   + + R ++IN         L +  R+ W
Sbjct: 63  TRRPEALGWKVSAQVTSLGQSQEIETWSE---EGAARQVKINSKTA-AQTALGRVSRVLW 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+PSMDR++   +  RRRFLDRM  + +P H    + +E+ MR RNRLL     + SW  
Sbjct: 119 LIPSMDRLWIEGAEGRRRFLDRMTLSFEPGHADATLAYEKAMRERNRLLKNMVREPSWYQ 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E QMA+ GV I+  R   +  L+    +      FP  +L L        +      +
Sbjct: 179 ALEVQMAQAGVVIDQNRRMALRQLA--AAQLDATTAFPAAELEL-----IHNEAPLPEGE 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                   D R  D  + RTLIGPHR+DLI  Y  K +     STGEQK +LV + LA+A
Sbjct: 232 STLRDAFADSRSRDLAAGRTLIGPHRADLIGTYRAKGVAAKDCSTGEQKALLVSLILANA 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++  +G AP+LLLDE++AHLD D+R AL+  +T +G+Q +MTGT+KS+FD+L + A++
Sbjct: 292 RALAQESGAAPLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTEKSLFDTLGDDAQY 351

Query: 365 MRI 367
             I
Sbjct: 352 FEI 354


>gi|332163519|ref|YP_004300096.1| recombination protein F [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325667749|gb|ADZ44393.1| recombination protein F [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330861743|emb|CBX71917.1| DNA replication and repair protein recF [Yersinia enterocolitica
           W22703]
          Length = 361

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  + + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHECAEF-VLHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 347 MFRVEHGKI 355


>gi|256848503|ref|ZP_05553945.1| DNA replication and repair protein RecF [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714770|gb|EEU29749.1| DNA replication and repair protein RecF [Lactobacillus coleohominis
           101-4-CHN]
          Length = 374

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 157/373 (42%), Gaps = 14/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ +++  FRNY  L++VF     I +G+N  GKTN+LEAI  L+  +  R +   ++
Sbjct: 1   MILQEMHLKHFRNYDELKVVFSPGINILIGENAQGKTNLLEAIHVLALTKSHRTSKDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     + G        + LE +  +  + +++N +    +     +L +  
Sbjct: 61  IQWKHKQAF-----LSGKVQKQVERVPLEIQLAQGGKRVKVNHLYQSRLSAYVGNLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G+   RR+F++     +   +   +  +  L++ RN+ L +       D 
Sbjct: 116 FAPEDLALVKGVPQVRRQFMNMEFGQMSSAYLYNVSHYHSLLQQRNQYLKQLRSGEQTDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
                I  Q+A+ G  I +AR  ++  L        +  +    +L L        D+  
Sbjct: 176 VLLGVISDQLAQDGAAIVLARFRLLKQLEKWAQRLHEHISLQKEQLRLKYVTQLTIDEQT 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   L+ +  K   D  + +     TL GP R D+      + +    GS G+Q+   + 
Sbjct: 236 TRENLETQLRKLFDDNLEREIALGTTLAGPQRDDIHFIVNGQNV-QHFGSQGQQRTTALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-S 357
           + LA   L+   TG  P+LLLD++ + LD+D++  L   + D   Q F+T T  S     
Sbjct: 295 VKLAEIDLMKEQTGEYPLLLLDDVLSELDDDRQTHLLTAIQDK-VQTFLTTTSLSGVARQ 353

Query: 358 LNETAKFMRISNH 370
           L +     +I   
Sbjct: 354 LIKQPTIFKIVGG 366


>gi|261250637|ref|ZP_05943212.1| DNA recombination and repair protein RecF [Vibrio orientalis CIP
           102891]
 gi|260939206|gb|EEX95193.1| DNA recombination and repair protein RecF [Vibrio orientalis CIP
           102891]
          Length = 360

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 148/369 (40%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    V
Sbjct: 1   MPLSRLIIKQFRNIEACDINLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNECNELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +         F+RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRSFIDWGVFHTESAFYDAWGRFKRLNKQRNALLKTATSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +MA L   I+  R   +  +     +  Q E  P   + L  +     +       
Sbjct: 177 YWDQEMARLAENISQWRATYVEQMKLKAEQICQ-EFLPEFDIQLKYYRGWDKETP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YQEILEKNFERDQALGYTFSGPNKADLRIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   + + G+Q+F++  TD  + D  +E  +
Sbjct: 288 QHLTEMTGKQCIYLIDDFASELDSQRRKRLADCLKETGAQVFVSSITDSQIADMRDENGR 347

Query: 364 FMRISNHQA 372
              + +   
Sbjct: 348 MFHVEHGTI 356


>gi|258622960|ref|ZP_05717975.1| recF protein [Vibrio mimicus VM573]
 gi|258626084|ref|ZP_05720935.1| recF protein [Vibrio mimicus VM603]
 gi|262166786|ref|ZP_06034523.1| DNA recombination and repair protein RecF [Vibrio mimicus VM223]
 gi|262172780|ref|ZP_06040458.1| DNA recombination and repair protein RecF [Vibrio mimicus MB-451]
 gi|258581610|gb|EEW06508.1| recF protein [Vibrio mimicus VM603]
 gi|258584743|gb|EEW09477.1| recF protein [Vibrio mimicus VM573]
 gi|261893856|gb|EEY39842.1| DNA recombination and repair protein RecF [Vibrio mimicus MB-451]
 gi|262026502|gb|EEY45170.1| DNA recombination and repair protein RecF [Vibrio mimicus VM223]
          Length = 363

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 158/368 (42%), Gaps = 12/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            +   P  F      E         + +     R     ++I     + + +L + L + 
Sbjct: 61  IQNECPELFVHGRICEHSLTSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +    +RR F+D  VF  +P        F+RL + RN LL          
Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFYDAWGRFKRLSKQRNALLKSAQSYRE-L 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S  + ++A L  +I+  R   +N L S + E + +   P   + L  +   + DQ     
Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQLKS-VAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              Y   L    + D     T  GP+++DL +      +     S G+ K+++  + +A 
Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
            + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++
Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350

Query: 363 KFMRISNH 370
           K   +++ 
Sbjct: 351 KTFHVAHG 358


>gi|85713966|ref|ZP_01044955.1| recombination protein F [Nitrobacter sp. Nb-311A]
 gi|85699092|gb|EAQ36960.1| recombination protein F [Nitrobacter sp. Nb-311A]
          Length = 381

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 139/371 (37%), Positives = 211/371 (56%), Gaps = 4/371 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L++S+FRNY+S  L   +   +  G NG GKTN LEAIS LSPGRG RRA+  D+ 
Sbjct: 5   RILRLSLSQFRNYSSAALKTRSNMVVLAGPNGAGKTNCLEAISLLSPGRGLRRATRDDIA 64

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDR---SVRCLQINDVVIRVVDELNKHLRI 122
                  ++  A V+G  GLA +   ++  ++      R  +I+   +        HLR+
Sbjct: 65  DNRGDGSWAVSAEVQGPLGLATLGTGIDAPNNETAPGGRRCRIDREPVASAAAFGDHLRM 124

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL PSMD +F+G + +RRRFLDR+V AID  H  R+   ER +R RNRLL     D  W
Sbjct: 125 VWLTPSMDGLFTGPASDRRRFLDRLVLAIDSDHSGRVSALERSLRSRNRLLEMRNHDDLW 184

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
           C ++E + AEL V +   R + I  LS  +       +FP  ++ L G+++ K   +   
Sbjct: 185 CDAVERETAELAVAVAAMRAQTITRLSVALEARGSTSSFPSARIGLDGWMENKLLTEPAT 244

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+++ Y + L   R  D+ + RTL GPH +D  V Y  K +     STGEQK +L+G+ L
Sbjct: 245 AVEDRYREILRASRARDAAAGRTLEGPHLTDFEVIYAPKDMPAKEASTGEQKALLIGLVL 304

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHARL++  TG  P+LLLDE+ AHLD  +R+ALF  +  +G+Q++M+G D + F ++   
Sbjct: 305 AHARLVAEMTGIIPLLLLDEVVAHLDPHRRDALFSELAGLGAQVWMSGADPAAFANVGAG 364

Query: 362 AKFMRISNHQA 372
           ++   + + + 
Sbjct: 365 SETFNVDSGRI 375


>gi|290473097|ref|YP_003465958.1| gap repair protein [Xenorhabdus bovienii SS-2004]
 gi|289172391|emb|CBJ79158.1| gap repair protein with nucleoside triP hydrolase domain, part of
           RecFOR complex that targets RecA to ssDNA-dsDNA junction
           [Xenorhabdus bovienii SS-2004]
          Length = 363

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 157/369 (42%), Gaps = 13/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN A   L         VG NG GKT+ILEAI  L  GR FR      V
Sbjct: 1   MILSRLLIRDFRNIADADLTLATGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSIQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     R+E       +++ L        + ++I+      + EL K L +  
Sbjct: 61  IRHDCEEFI-LHGRLEQQFHERILAVGLSKNRLGDSK-VRIDGSDGHKIAELAKMLPMQL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR F+D   F  +PR     ++ +RL++ RN  L +         
Sbjct: 119 ITPEGFTLLNGGPKYRRAFIDWGCFHNEPRFFTAWVNLKRLLKQRNAALRQ-VTRYGQIQ 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L  +I+  R E I  ++  I E   K+  P   LS++       +       
Sbjct: 178 HWDRELAPLATEISQWRAEYIAGIAEDI-EKTCKQFLPEFTLSISFQQGWDKES------ 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +      +     S G+ K+++  + LA  
Sbjct: 231 -EYAELLARQFERDRTLTYTASGPHKADLRIRVDGTPVEDML-SRGQLKLLMCALRLAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
              +  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  T   V D ++  ++
Sbjct: 289 EYFTRQSGQKCLYLLDDFASELDAGRRQLLAERLKSTQAQVFVSAITPGQVTDMIDVNSR 348

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 349 MFRVEHGKI 357


>gi|251787655|ref|YP_003002376.1| recombination protein F [Dickeya zeae Ech1591]
 gi|247536276|gb|ACT04897.1| DNA replication and repair protein RecF [Dickeya zeae Ech1591]
          Length = 361

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 155/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR    A V
Sbjct: 1   MALTRLLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     R+EG E    + +      D +VR   I+      V EL + L I  
Sbjct: 61  IRHEQAEFI-LHGRIEGQERERSVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL+R RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFSAWSNLKRLLRQRNAALRQ-VSHYGQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L   I+  R E  +A+++ I      +  P   LS +       +       
Sbjct: 176 AWDRELVPLAEGISRWRAEYSSAIAADIGSTCA-QFLPEFSLSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D     T +GPH++D  +     A+     S G+ K+++  + LA  
Sbjct: 229 -DYAELLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++  T + + D + E  K
Sbjct: 287 EFLTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|254291125|ref|ZP_04961922.1| recF protein [Vibrio cholerae AM-19226]
 gi|150422970|gb|EDN14920.1| recF protein [Vibrio cholerae AM-19226]
          Length = 363

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 157/368 (42%), Gaps = 12/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            +   P  F      E         + +     R     ++I     + + +L + L + 
Sbjct: 61  IQNECPELFVHGRICEHSLTSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +    +RR F+D  VF  +P        F+RL + RN LL          
Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFYDAWGRFKRLSKQRNALLKSAQSYRE-L 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S  + ++A L  +I+  R   +N L   + E + +   P   + L  +   + DQ     
Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              Y   L    + D     T  GP+++DL +      +     S G+ K+++  + +A 
Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
            + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++
Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350

Query: 363 KFMRISNH 370
           K   +++ 
Sbjct: 351 KTFHVAHG 358


>gi|261213261|ref|ZP_05927543.1| DNA recombination and repair protein RecF [Vibrio sp. RC341]
 gi|262402080|ref|ZP_06078644.1| DNA recombination and repair protein RecF [Vibrio sp. RC586]
 gi|260837535|gb|EEX64238.1| DNA recombination and repair protein RecF [Vibrio sp. RC341]
 gi|262351726|gb|EEZ00858.1| DNA recombination and repair protein RecF [Vibrio sp. RC586]
          Length = 363

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 158/368 (42%), Gaps = 12/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            +   P  F      E         + +     R     ++I     + + +L + L + 
Sbjct: 61  IQNECPELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +    +RR F+D  VF  +P        F+RL + RN LL          
Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFYDAWGRFKRLSKQRNALLKSAQSYRE-L 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S  + ++A L  +I+  R   +N L S + E + +   P   + L  +   + DQ     
Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQLKS-VAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              Y   L    + D     T  GP+++DL +      +     S G+ K+++  + +A 
Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
            + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++
Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350

Query: 363 KFMRISNH 370
           K   +++ 
Sbjct: 351 KTFHVAHG 358


>gi|168183730|ref|ZP_02618394.1| DNA replication and repair protein RecF [Clostridium botulinum Bf]
 gi|237793324|ref|YP_002860876.1| recombination protein F [Clostridium botulinum Ba4 str. 657]
 gi|259563360|sp|C3KXR0|RECF_CLOB6 RecName: Full=DNA replication and repair protein recF
 gi|182673206|gb|EDT85167.1| DNA replication and repair protein RecF [Clostridium botulinum Bf]
 gi|229261280|gb|ACQ52313.1| DNA replication and repair protein RecF [Clostridium botulinum Ba4
           str. 657]
          Length = 364

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 163/372 (43%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+
Sbjct: 1   MYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   + ++  T+   E ++   DI+I          + + +N + I+ + EL  +L + 
Sbjct: 61  IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182
              P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +  
Sbjct: 116 MFSPEDLRIIKDSPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKINDI 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+++ G  I   R + ++ L+ +     +K       ++     + K    F  
Sbjct: 176 IDIYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            ++E        RK D     T IGPHR D  V   +    I  GS G+Q+  ++ +  A
Sbjct: 233 AEKELLMFFKKNRKKDFERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361
              +I N  G  P+LLLD++ + LD +++  +   +  I  Q  +T T     D   +  
Sbjct: 292 SLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLDKK 349

Query: 362 -AKFMRISNHQA 372
            ++   ++N + 
Sbjct: 350 QSQLYLVNNGKI 361


>gi|300811994|ref|ZP_07092450.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497020|gb|EFK32086.1| DNA replication and repair protein RecF [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 381

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 88/377 (23%), Positives = 155/377 (41%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +     S FRN A L L FD    +F+G+N  GKTN+LEAI FL+  R  R ++  ++
Sbjct: 1   MYLGRFKQSGFRNLALLDLEFDPHVNVFLGENAQGKTNLLEAIYFLALSRSHRTSNDREM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       FA + G      + + L     +  +   +N V    + +   HL    
Sbjct: 61  IAFGQD-----FASLAGRVHKRQLDLDLRIVISKKGKSAWVNRVEQARLSKYVGHLNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRF+D     I+P +      + +L++ RN  L         D 
Sbjct: 116 FSPEDLELVKGAPSLRRRFMDLEFGQINPEYLYFASQYRQLLQQRNNYLKQLARRQASDQ 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
                +  Q+A    ++   R   +  L+    E  +  +    +L +      K     
Sbjct: 176 VLLGVLTEQVATAASELIWRRYRYLADLNRYAAEAYRAISGQREELRVLYRPSAKEITAA 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                +K++   +  +    +     T +GPHR DL      K   +   S G+Q+ + +
Sbjct: 236 DQPAQIKQKMLDRFAEIADDELRRATTQLGPHRDDLEFQLDGKNAHL-FASQGQQRTIAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA  +LI   TG  PILLLD++ + LD++++ AL   +    +Q F+T TD      
Sbjct: 295 SLKLAEIQLIKQLTGEEPILLLDDVMSELDQNRQAALLNFI-HGQTQTFITTTDLDGISQ 353

Query: 357 SLNETAKFMRISNHQAL 373
            + +  +   I + + +
Sbjct: 354 EIVKQPRIFYIHSGKII 370


>gi|293393723|ref|ZP_06638031.1| recombination protein F [Serratia odorifera DSM 4582]
 gi|291423767|gb|EFE96988.1| recombination protein F [Serratia odorifera DSM 4582]
          Length = 362

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 151/369 (40%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         VG NG GKT++LEA+  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLAPAPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P +        G E    + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHDQPEYVLHGRVDSGSERELSVGLSKSRQGDSKVR---IDGSDGHKVAELAQLLPMQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 118 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I      +  P   LS +       +       
Sbjct: 177 AWDQELIPLAERISDWRAAYSDAIAADITATCA-QFLPEFALSFSFQRGWDKES------ 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 230 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + L+D+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 288 EFLTRQSGRRCLYLIDDFASELDTGRRRLLADRLKATQAQVFVSAVSAEQVTDMVGEKGK 347

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 348 MFRVEQGKI 356


>gi|296100374|ref|YP_003610520.1| recombination protein F [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295054833|gb|ADF59571.1| recombination protein F [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 357

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    SF     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQESF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELALLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    ++  + +   K+  P   L+ +     + +       
Sbjct: 176 PWDMELIPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVMDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|313203095|ref|YP_004041752.1| DNA replication and repair protein recf [Paludibacter
           propionicigenes WB4]
 gi|312442411|gb|ADQ78767.1| DNA replication and repair protein RecF [Paludibacter
           propionicigenes WB4]
          Length = 363

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 156/376 (41%), Gaps = 19/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N     LVF      F+G+NG+GKTNIL+AI FLS  +    +  +  
Sbjct: 1   MRLNSLSILNYKNIREAELVFSPNINCFIGNNGMGKTNILDAIYFLSFCKSHSNSIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+  F     +    +   DI   ++ R  +  +    N      + +    L +  
Sbjct: 61  ILHGAE-FCLLQGKYTLGDQTEDIYCGMKMRQKKQFKR---NKKEYERLSDHIGLLPLVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P    +  G S ERR+F+D ++   +  +   ++ +   ++ RN LL  E   D S  
Sbjct: 117 VSPDDSELIQGGSEERRKFIDGVISQYNKTYLNNLLQYNNALKQRNALLKSEKPVDDSLL 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E QMA  G  I   R   I+    +   Y    +  + ++SL+              
Sbjct: 177 DIWEEQMAAFGNYIYEQRKLFIDEFIPVFQNYYSYISVGNEQISLSYHSQHHDR------ 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +   K+   R  D +   +  G H+ DL +   D  I    GS G+ K  L+ + LA 
Sbjct: 231 --DIKTKMLATRDRDRILGYSTQGIHKDDLEMLLGDYPIKRV-GSQGQNKTYLISLKLAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSV----FDSL 358
              +  T   +P+LLLD+I   LD  +   +  +V+ D   QIF+T T++         L
Sbjct: 288 FDFLKRTHNLSPLLLLDDIFDKLDSVRVKKIIELVSGDTFGQIFITDTNREHLDLLLLQL 347

Query: 359 NETAKFMRISNHQALC 374
            + A    + N +  C
Sbjct: 348 EQDATIFTVENGEISC 363


>gi|237729022|ref|ZP_04559503.1| recombination protein F [Citrobacter sp. 30_2]
 gi|226909644|gb|EEH95562.1| recombination protein F [Citrobacter sp. 30_2]
          Length = 357

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 152/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    SF     R++G E    I +  +   D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQESF-VLHGRLQGEERETSIGLTKDKLGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEVGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    ++  + +  Q +  P   LS +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAQDMADTCQ-QFLPEFSLSFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|282863317|ref|ZP_06272376.1| DNA replication and repair protein RecF [Streptomyces sp. ACTE]
 gi|282561652|gb|EFB67195.1| DNA replication and repair protein RecF [Streptomyces sp. ACTE]
          Length = 376

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 102/382 (26%), Positives = 163/382 (42%), Gaps = 23/382 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   +  D   T+FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARAEVPLDPGVTVFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A  +G        I+LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGAERAVVRAAVTQGERSQL---IELEINPGRANRARVNRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
             P    +  G   ERRRFLD +V A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233
              D S     +  +  +G ++   R+++I  L  L  +           + L     + 
Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYADVAPGGGPVALEYRSSVG 236

Query: 234 GKFDQS--FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
            +   S     L E+    L + RK +     TL+GPHR DL++          + S GE
Sbjct: 237 PEVGPSRTREELYEQVMAALAEARKQEIERGVTLVGPHRDDLVLGLRGMPAK-GYASHGE 295

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350
                + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   
Sbjct: 296 SWSYALALRLASYDLLRGE-GNEPVLVLDDVFAELDTRRRERLAELVA-PGEQVLVTAAV 353

Query: 351 DKSVFDSLNETAKFMRISNHQA 372
           D  V   L+ T     +S    
Sbjct: 354 DDDVPGVLSGT--RYAVSEGAV 373


>gi|195941091|ref|ZP_03086473.1| recombination protein F [Escherichia coli O157:H7 str. EC4024]
 gi|295095338|emb|CBK84428.1| DNA replication and repair protein RecF [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 357

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    SF     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQESF-VLHGRLQGAERETAIGLTKDKQGDSKVR---IDGTDGHKVAELALLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    ++  + +   K+  P   L+ +     + +       
Sbjct: 176 PWDMELIPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|307133245|ref|YP_003885261.1| gap repair protein [Dickeya dadantii 3937]
 gi|306530774|gb|ADN00705.1| gap repair protein [Dickeya dadantii 3937]
          Length = 361

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR    A V
Sbjct: 1   MALTRLLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     R+EG E    + +      D +VR   I+      V EL + L I  
Sbjct: 61  IRHEQAEFI-LHGRIEGQERERSVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL+R RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFSAWSNLKRLLRQRNAALRQ-VSHYGQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L   I+  R +   A+++ I      +  P   LS +       +       
Sbjct: 176 AWDRELVPLAEGISQWRADYSAAIAADIGSTCA-QFLPEFSLSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D     T +GPH++D  +     A+     S G+ K+++  + LA  
Sbjct: 229 -DYAELLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++  T + + D + E  K
Sbjct: 287 EFLTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|297200943|ref|ZP_06918340.1| recombination protein F [Streptomyces sviceus ATCC 29083]
 gi|197716886|gb|EDY60920.1| recombination protein F [Streptomyces sviceus ATCC 29083]
          Length = 373

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 103/379 (27%), Positives = 168/379 (44%), Gaps = 20/379 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EAI +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAIGYLATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    ++ R        +R  D L   +R   
Sbjct: 61  VRMGADRAI---VRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
              D S     +  +A +G ++   R+++I AL  L  +  ++       ++L       
Sbjct: 177 RSMDLSTLDVWDQHLARVGAELLAQRLDLIAALQPLTDKAYEQLAPGGGPIALEYKPSAP 236

Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +  +  AL E+    L + RK +     TL+GPHR DL +    +     + S GE   
Sbjct: 237 GEAHTREALHEQLMAALAEARKQEIERGVTLVGPHRDDLNLKL-GQLPAKGYASHGESWS 295

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
             + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   D  
Sbjct: 296 YALALRLASYDLLRAE-GNEPVLILDDVFAELDTRRRERLAELVA-PGEQVLVTAAVDDD 353

Query: 354 VFDSLNETAKFMRISNHQA 372
           V   L  T     +S    
Sbjct: 354 VPHVLAGT--RYAVSEGAV 370


>gi|254994016|ref|ZP_05276206.1| recombination protein F [Listeria monocytogenes FSL J2-064]
          Length = 352

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 78/356 (21%), Positives = 148/356 (41%), Gaps = 13/356 (3%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82
           L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D             A++EG 
Sbjct: 1   LEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDFIMWEKEE-----AKMEGR 55

Query: 83  EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142
                 S+ LE    +  +  ++N +  + + +   +L +    P    +  G    RRR
Sbjct: 56  IAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVKGAPGIRRR 115

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQMAELGVKIN 198
           FL+  +  + P +   + +++R+++ RN+ L     +   D      +  Q A++ + + 
Sbjct: 116 FLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDPILLDILTEQFADVAINLT 175

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKM 257
             R + I  L +       + +     L +        +       K +  +K+   ++ 
Sbjct: 176 KRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASITLNGDDPEVWKADLLQKMESIKQR 235

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317
           +     TLIGPHR D +     + +    GS G+Q+   + I LA   LI   TG  P+L
Sbjct: 236 EIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVL 294

Query: 318 LLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQA 372
           LLD++ + LD+ +++ L   +     Q F+T T  S  D    + A    +     
Sbjct: 295 LLDDVLSELDDYRQSHLLGAIEGK-VQTFVTTTSTSGIDHETLKQATTFYVEKGTV 349


>gi|168235475|ref|ZP_02660533.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737823|ref|YP_002116780.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|226737833|sp|B4TN05|RECF_SALSV RecName: Full=DNA replication and repair protein recF
 gi|194713325|gb|ACF92546.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291440|gb|EDY30792.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 357

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      + EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E   A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSIAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSVISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|153212933|ref|ZP_01948527.1| recF protein [Vibrio cholerae 1587]
 gi|124116159|gb|EAY34979.1| recF protein [Vibrio cholerae 1587]
          Length = 363

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 157/368 (42%), Gaps = 12/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            +   P  F      E         + +     R     ++I     + + +L + L + 
Sbjct: 61  IQNECPELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +    +RR F+D  VF  +P        F+RL + RN LL          
Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S  + ++A L  +I+  R   +N L   + E + +   P   + L  +   + DQ     
Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              Y   L    + D     T  GP+++DL +      +     S G+ K+++  + +A 
Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
            + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++
Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350

Query: 363 KFMRISNH 370
           K   +++ 
Sbjct: 351 KTFHVAHG 358


>gi|257054093|ref|YP_003131925.1| recombination protein F [Saccharomonospora viridis DSM 43017]
 gi|256583965|gb|ACU95098.1| DNA replication and repair protein RecF [Saccharomonospora viridis
           DSM 43017]
          Length = 390

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 97/395 (24%), Positives = 167/395 (42%), Gaps = 35/395 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR++  + L      T+ VG NG GKTN+LEAI ++S     R A+ A +
Sbjct: 1   MYLRHLQVTDFRSWEHVDLPLAQGPTVLVGPNGQGKTNLLEAIGYISTLSSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G        A V       +++++LE    R+ R  +IN   +    ++   LR   
Sbjct: 61  VRHGCDRALVRAAVVNEG---RELTVELEIAPGRANRA-RINRGAVGKPRDVLGILRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------- 175
             P    +  G   ERRRFLD ++    PR+     +++R++R RN LL           
Sbjct: 117 FSPEDLALVRGDPSERRRFLDDLLVQRAPRYAGVRSEYDRVLRQRNALLKSVGRAGGRRG 176

Query: 176 -----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228
                  +  S     +  +A  G ++  AR+ ++  L   +              +++ 
Sbjct: 177 AREETDPYALSTLQVWDNHLASAGAELLAARLNLVAELGPYVASSYADVAPDSRPARIAY 236

Query: 229 TGFLDGKFDQSF----------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
              L G   + +            L E   + L + R+ +     +LIGPHR DL +   
Sbjct: 237 RSSLGGALPEGWGTPDGPEASTEQLGEILLRVLGEVRETELERGVSLIGPHRDDLELMLG 296

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           + A    + S GE     + + LA  RL+ N +G  P+LLLD++ A LD  +R  L  + 
Sbjct: 297 E-APAKGYASHGESWSFALALRLASYRLLRNESGGEPVLLLDDVFAELDSRRRARLAEVA 355

Query: 339 TDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372
           T    Q+ +T   D+ V            +SN + 
Sbjct: 356 TKAE-QVLVTAAVDEDVPVEF--AGVRYAVSNGEV 387


>gi|146309670|ref|YP_001174744.1| recombination protein F [Enterobacter sp. 638]
 gi|166918723|sp|A4W4R3|RECF_ENT38 RecName: Full=DNA replication and repair protein recF
 gi|145316546|gb|ABP58693.1| DNA replication and repair protein RecF [Enterobacter sp. 638]
          Length = 357

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQVGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    SF     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQESFI-LHGRLQGSERETSIGLTKDKQGDSKVR---IDGTDGHKVAELALLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQVR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    ++  + +   K+  P   L+ +     + +       
Sbjct: 176 PWDMELVPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  ++ +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDKNSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|116512900|ref|YP_811807.1| recombination protein F [Lactococcus lactis subsp. cremoris SK11]
 gi|123025165|sp|Q02WH8|RECF_LACLS RecName: Full=DNA replication and repair protein recF
 gi|116108554|gb|ABJ73694.1| DNA replication and repair protein RecF [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 359

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 155/370 (41%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K + +  FRNY  L+L F     IF+G N  GKTNILEAI FL+  R  R +   ++
Sbjct: 1   MKLKQIELKNFRNYEDLKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        +V G+   A  ++ LE +     R  + N +    + +    L+I  
Sbjct: 61  ICWSGQEM-----KVSGLVEKAHATVPLEVQLSSKGRIAKANHLKENRLADYIGQLKILM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
             P    +  G    RRRF+D  +  I   +    + + R ++ RN  L   +   D ++
Sbjct: 116 FAPENLELVKGSPATRRRFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDQAKIDKNF 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            + ++ Q+AE G KI   R   I  L     +  ++       L +T   + K D     
Sbjct: 176 LTVLDEQLAEHGNKIMFERKTFIEKLEIHAKKIHEQLTHGLETLKITYNQNVKTD----- 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
               ++K+L   +  D    +T +GPHR DL     +  +    GS G+Q+ V + I LA
Sbjct: 231 ----FSKELLSRQDHDIFRHQTTVGPHRDDLQFFINEINV-ADFGSQGQQRTVALSIKLA 285

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              LI   TG  PILLLD++ + LD  ++  L               T      +L E  
Sbjct: 286 EIDLIFEETGEYPILLLDDVMSELDNHRQLDLIETSLGKTQTFIT-TTTLDHLKNLPENL 344

Query: 363 KFMRISNHQA 372
               +++   
Sbjct: 345 SIFHVTDGTI 354


>gi|225386350|ref|ZP_03756114.1| hypothetical protein CLOSTASPAR_00094 [Clostridium asparagiforme
           DSM 15981]
 gi|225047532|gb|EEG57778.1| hypothetical protein CLOSTASPAR_00094 [Clostridium asparagiforme
           DSM 15981]
          Length = 361

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 152/375 (40%), Gaps = 21/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  +RNY  L +  +    I  GDN  GKTNILEA+      +  + A   D+
Sbjct: 1   MIIESIELKNYRNYEELHMELNEGTNILYGDNAQGKTNILEAVYVCCTSKSHKNAKDRDI 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     S      R   +    D+ +K         + + IN + IR   EL     + 
Sbjct: 61  IRFDQDESHIKMQIRKNDVPYRIDMHLK-----KNKPKGIAINGMPIRRASELFGIANVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
              P    I      ERRRF+D  +  ++  +   ++ + +++  RN+LL E  F   + 
Sbjct: 116 CFSPEDLNIIKNGPSERRRFIDMELCQLNKLYVHSLVQYNKVLVQRNKLLKELAFRPDYG 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+   G ++   R + +  L+ +I     + +     L +    D       
Sbjct: 176 ETLDVWDMQLVNYGKEVMEYRGDFVCRLNEMIHGIHARLSGQKEDLKICYEPDTD----- 230

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                ++ + L   R  D   + TL GPHR D+        I    GS G+Q+   + + 
Sbjct: 231 ---AAQFEEALKRSRPQDMKQKTTLCGPHRDDISFFVNGIDIR-KFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359
           L+   L+       PILLLD++ + LD  ++N L   + DI  Q  +T T    F ++  
Sbjct: 287 LSELELVKQLIHDRPILLLDDVLSELDAGRQNHLLNAINDI--QTIITCTGLDDFVNNRF 344

Query: 360 ETAKFMRISNHQALC 374
           +  K  ++ +   + 
Sbjct: 345 KIDKIFKVIDGAVVS 359


>gi|161505633|ref|YP_001572745.1| recombination protein F [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|189039638|sp|A9MJU2|RECF_SALAR RecName: Full=DNA replication and repair protein recF
 gi|160866980|gb|ABX23603.1| hypothetical protein SARI_03809 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 357

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E  +A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D +   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRILTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  ++ +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDKNSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFSVEKGKI 355


>gi|194472063|ref|ZP_03078047.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194458427|gb|EDX47266.1| DNA replication and repair protein RecF [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
          Length = 357

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      + EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +      + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITSEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E  +A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|146276062|ref|YP_001166221.1| recombination protein F [Rhodobacter sphaeroides ATCC 17025]
 gi|145554303|gb|ABP68916.1| DNA replication and repair protein RecF [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 363

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 137/370 (37%), Positives = 202/370 (54%), Gaps = 17/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++ + R+ FD +   FVG NG GKTN+LEAIS LSPGRG RRA+  ++
Sbjct: 4   LAVTSLALSHFRSHRAARMAFDGRPVAFVGANGAGKTNVLEAISLLSPGRGLRRAAADEI 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A V G+    ++    E    R VR     D        L + LRI W
Sbjct: 64  ARRPEALGWKVAAAVRGLHSDHEVETWAEGGGARQVRI----DGKAATQVMLGRLLRIVW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR+++  +  RRRFLDR+  +  P H   ++D+E+ MR RNRLL E   D+ W +
Sbjct: 120 LVPAMDRLWTEAAEGRRRFLDRVAMSFAPDHAEAVLDYEKAMRERNRLLKEQVADAHWHA 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E +MAE    I   R   +  L  +  +   +  FP   LS+                
Sbjct: 180 ALEGRMAEAARVIRAHREAAVARL--MAAQGAAETAFPRAMLSVAS-----------EDP 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+ A    +GR+ D  + RTL+GPHR+DL   Y  K +  A  STGEQK +L+ + LA+ 
Sbjct: 227 EDLAAAWAEGRRRDMAAGRTLLGPHRADLTAIYAAKGVPAAQCSTGEQKALLISLVLANG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G APILLLDE++AHLDE +R ALF  +  +G+Q +MTGT   +F +L   A+ 
Sbjct: 287 RALAEDLGAAPILLLDEVAAHLDEGRRAALFDEICALGAQAYMTGTGPELFTALGGRAQR 346

Query: 365 MRISNHQALC 374
           + ++  + L 
Sbjct: 347 IEVTEAEGLS 356


>gi|153940655|ref|YP_001389373.1| recombination protein F [Clostridium botulinum F str. Langeland]
 gi|166220705|sp|A7G9B3|RECF_CLOBL RecName: Full=DNA replication and repair protein recF
 gi|152936551|gb|ABS42049.1| DNA replication and repair protein RecF [Clostridium botulinum F
           str. Langeland]
 gi|295317480|gb|ADF97857.1| DNA replication and repair protein RecF [Clostridium botulinum F
           str. 230613]
          Length = 364

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 163/372 (43%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK +++  FRNY  + L       IFVG+N  GKTNILE+I + S G+  R     D+
Sbjct: 1   MYIKNVHLINFRNYDDMYLELSPNTNIFVGNNAQGKTNILESIYYSSIGKSHRTNKDKDL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   + ++  T+   E ++   DI+I          + + +N + I+ + EL  +L + 
Sbjct: 61  IKWDKNNTYLRTYVSRERLDKTIDINI-----FKNGKKAITVNKIKIKKISELMGNLNVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSW 182
              P   RI       RR+FLD  +  I+  +   ++ + +++  RN  L       +  
Sbjct: 116 MFSPEDLRIIKDYPGNRRKFLDIELCKINNVYYHDLVQYNKILSERNTALKNWNNKINDI 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+++ G  I   R + ++ L+ +     +K       ++     + K    F  
Sbjct: 176 IDIYDEQLSKYGAFIIKERNKYLDKLNIIGKNIHKKITNDLEDINFRYLTNIK---DFDN 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            ++E    L   RK D     T IGPHR D  V   +    I  GS G+Q+  ++ +  A
Sbjct: 233 AEKELLIVLKKNRKKDLERNSTSIGPHRDDFEVSINNIDTRI-FGSQGQQRTAVLTLKFA 291

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET- 361
              +I N  G  P+LLLD++ + LD +++  +   +  I  Q  +T T     D      
Sbjct: 292 SLEIIKNIIGEYPVLLLDDVLSELDSNRQKFVLNSIDKI--QTIITCTGIEEIDKYLHKK 349

Query: 362 -AKFMRISNHQA 372
            ++   ++N + 
Sbjct: 350 QSQLYLVNNGKI 361


>gi|239930172|ref|ZP_04687125.1| recombination protein F [Streptomyces ghanaensis ATCC 14672]
 gi|291438514|ref|ZP_06577904.1| RecF protein [Streptomyces ghanaensis ATCC 14672]
 gi|291341409|gb|EFE68365.1| RecF protein [Streptomyces ghanaensis ATCC 14672]
          Length = 373

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 166/379 (43%), Gaps = 20/379 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y  + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYPRVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    ++ R        +R  D L   +R   
Sbjct: 61  VRVGADRAII---RAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
              D S     +  +A  G ++   R+++I  L  L  +  ++       LSL       
Sbjct: 177 RTMDLSTLDVWDQHLARAGAELLAQRLDLITTLQPLADKAYERLAPGGGPLSLEYRPSAP 236

Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +  +   L E+    L + RK +     TL+GPHR DL++    +     + S GE   
Sbjct: 237 GEAHTREDLFEQLTAALAEARKQEIERGVTLVGPHRDDLLLKL-GRLPAKGYASHGESWS 295

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
             + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   D  
Sbjct: 296 YALALRLASYDLLRAE-GNEPVLVLDDVFAELDTRRRERLAELVA-PGEQVLVTAAVDDD 353

Query: 354 VFDSLNETAKFMRISNHQA 372
           V   L+ T     ++    
Sbjct: 354 VPHVLSGT--RFAVAEGTV 370


>gi|325280925|ref|YP_004253467.1| DNA replication and repair protein recF [Odoribacter splanchnicus
           DSM 20712]
 gi|324312734|gb|ADY33287.1| DNA replication and repair protein recF [Odoribacter splanchnicus
           DSM 20712]
          Length = 364

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 157/376 (41%), Gaps = 21/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K LNI  F+N A   L F +    FVG+NGVGKTN+L+AI  LS  + +        
Sbjct: 1   MTLKELNIINFKNIAEATLTFTSGFNCFVGNNGVGKTNVLDAIYHLSMCKSYFNLPDLQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P FF    + E       +   ++       +  + N      + E    + +  
Sbjct: 61  IRHEEP-FFVVQGKYERGGEELTVYCGVKRG---QKKVFKKNQKAYDKLSEHIGLIPLVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---FDSS 181
           + P    +  G S ERR+ +D ++   D  +  R+I + + +  RN LL        D  
Sbjct: 117 ISPEDFILIDGGSEERRKLVDGIISQCDRVYLHRLIRYNKALTQRNMLLKSAAGKFLDPE 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                  Q+AE G  I   R+  +    S+   Y ++ +    ++ L      K      
Sbjct: 177 MLEVWNEQLAEHGEAIRQKRIAFLKEFRSVFQTYYERLSLGREEVCLEYKPSVK------ 230

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
             +  +   L      D +   T +G HR DL+++  D A+    GS G++K  L+ + L
Sbjct: 231 --EGNFLTALKQAADRDRLLTYTTVGIHRDDLVLNIGDYAVR-KIGSQGQKKTFLIALKL 287

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSLNE 360
           A    +   +   P+LLLD+I   LD D+   + +IV  ++  Q+F+T T++   D +  
Sbjct: 288 AQYHWLHQMSEVKPLLLLDDIFDKLDADRVEQIVKIVGGEMFGQVFITDTNRGHIDDILR 347

Query: 361 ----TAKFMRISNHQA 372
                 K   ++  + 
Sbjct: 348 AQAVDYKLFTVTGGEI 363


>gi|123444340|ref|YP_001008305.1| recombination protein F [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|166221878|sp|A1JT78|RECF_YERE8 RecName: Full=DNA replication and repair protein recF
 gi|122091301|emb|CAL14187.1| DNA metabolism protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 361

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  + + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHECAEF-VLHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L      D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -DYGELLERQFVRDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 347 MFRVEHGKI 355


>gi|309804122|ref|ZP_07698203.1| DNA replication and repair protein RecF [Lactobacillus iners
           LactinV 11V1-d]
 gi|309809779|ref|ZP_07703633.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN
           2503V10-D]
 gi|308163890|gb|EFO66156.1| DNA replication and repair protein RecF [Lactobacillus iners
           LactinV 11V1-d]
 gi|308169958|gb|EFO71997.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN
           2503V10-D]
          Length = 373

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 159/376 (42%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++
Sbjct: 1   MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +          A + G     +I   L+       +   IN +  + +      +    
Sbjct: 61  IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D 
Sbjct: 116 FSPEDLSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237
            + + +  Q+A L  ++   RV  ++ L     +     +     L +     F +    
Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEK 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   + ++        R  +     TL+GPHR DL V + +K     + S G+Q+ +++
Sbjct: 236 DSVEKIYKKILLSFEHVRVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356
            I LA   L+       PILLLD++ + LD  ++  L   +    +Q F+T TD  S+  
Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQ 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +  RI +   
Sbjct: 354 EMIKIPRIFRIVSGTV 369


>gi|289449549|ref|YP_003474443.1| putative DNA replication and repair protein RecF [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184096|gb|ADC90521.1| putative DNA replication and repair protein RecF [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 382

 Score =  309 bits (792), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 91/382 (23%), Positives = 169/382 (44%), Gaps = 18/382 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRNY  L   F  +  +F G NG GKTN+LEAI   + GR  R +  AD+
Sbjct: 1   MIINKLELENFRNYDHLTASFIPEINVFYGFNGQGKTNLLEAIYLCTCGRSHRTSRDADL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVVIRVVDELNKHLR 121
            +     +      +   E    +SI  +       R  R ++ + + +  + +L     
Sbjct: 61  IKFEQLHYQVLIEFIPQDEYCETLSIAYKKDNFSSARGKRIIKHDGIELTRIVDLMGIFH 120

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
                P   ++       RRRFLD ++  ID  +  ++  F ++++ RN++L +   +S 
Sbjct: 121 AVIFAPEDLQLLKDGPGIRRRFLDILISQIDKLYFIKLQQFVKIIQQRNKMLKDKNTNSK 180

Query: 182 W---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKF 236
           W       + Q+AEL   I   R++++N +S +  E+ Q+ +     I L          
Sbjct: 181 WQSLMDIWDFQLAELVTYIISKRIQVLNEISDMTKEFYQQISSGSEMIDLKYECTFKTNL 240

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 + +    +L   R+ D     T +GPH  D+     +K   +   S G+ + ++
Sbjct: 241 KLEKEKVVQNIYDELQKQRQNDLYRGSTSLGPHHDDMQFFLNNKQAKLV-ASQGQTRSIV 299

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA    ++  TG  P+LLLD++ + LD+++RNAL   +    +Q+F+T T+    +
Sbjct: 300 LALKLAELECLTEKTGIRPVLLLDDVMSELDQNRRNALIGAMKS--AQVFVTCTEPDQVE 357

Query: 357 SL-------NETAKFMRISNHQ 371
                      + K+  I N +
Sbjct: 358 EFSFSKNTDKSSIKYFNIDNGK 379


>gi|254486983|ref|ZP_05100188.1| DNA replication and repair protein RecF [Roseobacter sp. GAI101]
 gi|214043852|gb|EEB84490.1| DNA replication and repair protein RecF [Roseobacter sp. GAI101]
          Length = 365

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 193/368 (52%), Gaps = 14/368 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +S FR++    +  D +     G NG GKTNILEA+S LSPGRG RR+S  D+TR
Sbjct: 6   ISHLTLSHFRSHKRAIVDSDTRPVAIHGPNGAGKTNILEAVSLLSPGRGLRRSSALDMTR 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 +   A +  +    +I I  E    R VR     D        L +  R+ WL+
Sbjct: 66  RPEALGWKVTALLHSLGSAHEIEIWSEAGAARQVRI----DGKATPQTALGRIARVLWLI 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           PSMDR++   +  RRRFLDRM  +  P H  + + +E+ MR RNRLL +   + SW  ++
Sbjct: 122 PSMDRLWIEGAEGRRRFLDRMTLSFLPDHAEQSLAYEKAMRERNRLLKDMVREPSWYLAL 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E Q+AE G  I+  R   + A++    +   +  FP   LSL                ++
Sbjct: 182 EQQLAEAGAAIHANRQSALQAITE--AQSQAETAFPTATLSLIC--------DMPTTAQD 231

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
               L D R  D  + RTLIGPHR+DL   Y  K +     STGEQK +LV + LA+AR 
Sbjct: 232 LRAALADNRMRDLAAGRTLIGPHRADLEGVYAAKDVPARDCSTGEQKALLVSLILANARA 291

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           ++   G  P+LLLDE++AHLD  +R AL+  +T +G+Q +MTGT   +FDSL   A+ + 
Sbjct: 292 LAADFGAPPLLLLDEVAAHLDASRRAALYDEITALGAQAWMTGTGAELFDSLGPRAQMLE 351

Query: 367 ISNHQALC 374
           ++    + 
Sbjct: 352 VTETDGIS 359


>gi|186893347|ref|YP_001870459.1| recombination protein F [Yersinia pseudotuberculosis PB1/+]
 gi|226737851|sp|B2JYI8|RECF_YERPB RecName: Full=DNA replication and repair protein recF
 gi|186696373|gb|ACC87002.1| DNA replication and repair protein RecF [Yersinia
           pseudotuberculosis PB1/+]
          Length = 361

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  A + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I         P   LS         +       
Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFFFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -DYGELLARQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 347 MFRVEHGKI 355


>gi|315654134|ref|ZP_07907050.1| recombination protein F [Lactobacillus iners ATCC 55195]
 gi|315488830|gb|EFU78476.1| recombination protein F [Lactobacillus iners ATCC 55195]
          Length = 373

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 159/376 (42%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++
Sbjct: 1   MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +          A + G     +I   L+       +   IN +  + +      +    
Sbjct: 61  IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D 
Sbjct: 116 FSPEDLSLIKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237
            + + +  Q+A L  ++   RV  ++ L     +     +     L +     F +    
Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEK 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   + ++        R  +     TL+GPHR DL V + +K     + S G+Q+ +++
Sbjct: 236 DSVEKIYKKILLSFEHVRVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356
            I LA   L+       PILLLD++ + LD  ++  L   +    +Q F+T TD  S+  
Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQ 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +  RI +   
Sbjct: 354 EMIKIPRIFRIVSGTV 369


>gi|318608023|emb|CBY29521.1| DNA recombination and repair protein RecF [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 361

 Score =  309 bits (791), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  + + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHECAEF-VLHGRVDANERESSVGLSKSRQGDTRVR---IDGTDGHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYTQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVADMVGEKGK 346

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 347 MFRVEHGKI 355


>gi|126738625|ref|ZP_01754330.1| recombination protein F [Roseobacter sp. SK209-2-6]
 gi|126720424|gb|EBA17130.1| recombination protein F [Roseobacter sp. SK209-2-6]
          Length = 375

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 133/369 (36%), Positives = 198/369 (53%), Gaps = 11/369 (2%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            +  L +S FR++    +  D +     G NG GKTNILEA+S  SPGRG RRAS A++T
Sbjct: 13  ALTSLTLSHFRSHLRAEMHLDGRPVALFGANGAGKTNILEAVSLFSPGRGIRRASAAEMT 72

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           R      +     ++      +I       D+ + R ++I+      +  L +  R+ WL
Sbjct: 73  RRPEGLGWKLKGVLQTSAQPYEIETW---SDEGAARQVRIDGKPANQIA-LGQICRVVWL 128

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           VP MDR++   +  RRRFLDR+  + DP H    + +E+ MR RN+LL E   D  W   
Sbjct: 129 VPVMDRLWVEAAEGRRRFLDRIALSFDPAHAEASLTYEKSMRERNKLLKEQVRDPVWYRV 188

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +EAQMA  G +I++AR   I  L     +   +  FP  +L L    +G+  QS    + 
Sbjct: 189 LEAQMAASGHRIHMARTHAIEKLLD--AQRKAETAFPVAELQLLQS-EGEMPQS----EA 241

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E+   L + R  D    RTLIGPHRSDL+  Y  K +     STGEQK +LV + LA+AR
Sbjct: 242 EFVDALAENRSRDLSVGRTLIGPHRSDLLGHYAAKGVAAKDCSTGEQKALLVSLILANAR 301

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
            +   TG  P++LLDE++AHLD ++R AL+  +  +G+Q +MTGT   +F  L + A+ +
Sbjct: 302 ALMQETGAPPLVLLDEVAAHLDANRRQALYDEICALGAQAWMTGTGSELFAELKDRAQML 361

Query: 366 RISNHQALC 374
            +S    + 
Sbjct: 362 EVSEDAGIS 370


>gi|259500774|ref|ZP_05743676.1| recombination protein F [Lactobacillus iners DSM 13335]
 gi|302190775|ref|ZP_07267029.1| recombination protein F [Lactobacillus iners AB-1]
 gi|312874858|ref|ZP_07734877.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           2053A-b]
 gi|325913713|ref|ZP_08176075.1| DNA replication and repair protein RecF [Lactobacillus iners UPII
           60-B]
 gi|329919805|ref|ZP_08276756.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN
           1401G]
 gi|259167468|gb|EEW51963.1| recombination protein F [Lactobacillus iners DSM 13335]
 gi|311089603|gb|EFQ48028.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           2053A-b]
 gi|325477072|gb|EGC80222.1| DNA replication and repair protein RecF [Lactobacillus iners UPII
           60-B]
 gi|328937152|gb|EGG33580.1| DNA replication and repair protein RecF [Lactobacillus iners SPIN
           1401G]
          Length = 373

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++
Sbjct: 1   MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +          A + G     +I   L+       +   IN +  + +      +    
Sbjct: 61  IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D 
Sbjct: 116 FSPEDLSLIKGSPAFRRRFMDLEFGQINAEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237
            + + +  Q+A L  ++   RV  ++ L     +     +     L +     F +    
Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQKEILDIEYKASFPEFDEK 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   + ++        +  +     TL+GPHR DL V + +K     + S G+Q+ +++
Sbjct: 236 DSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356
            I LA   L+       PILLLD++ + LD  ++  L   +    +Q F+T TD  S+  
Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQ 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +  RI +   
Sbjct: 354 EMIKIPRIFRIVSGTV 369


>gi|238759586|ref|ZP_04620748.1| DNA replication and repair protein recF [Yersinia aldovae ATCC
           35236]
 gi|238702245|gb|EEP94800.1| DNA replication and repair protein recF [Yersinia aldovae ATCC
           35236]
          Length = 361

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 152/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  + + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHECAEF-VLHGRVDVNERESSVGLSKSRQGDSKVR---IDGTDGHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYAQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R     A+++ I         P   LS +       +       
Sbjct: 176 PWDLEIIPLAERISEWRAAYSGAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T IGPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -DYGELLERQFERDRALTYTAIGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++    + V D + E  K
Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKATQAQVFVSAVSAEQVTDMVGEKGK 346

Query: 364 FMRISNHQA 372
             R+ + + 
Sbjct: 347 MFRVEHGKI 355


>gi|294630341|ref|ZP_06708901.1| RecF protein [Streptomyces sp. e14]
 gi|292833674|gb|EFF92023.1| RecF protein [Streptomyces sp. e14]
          Length = 373

 Score =  308 bits (790), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 101/379 (26%), Positives = 165/379 (43%), Gaps = 20/379 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   +  D   T FVG NG GKTN++EA+ +L+     R A+ A +
Sbjct: 1   MHVTHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAVGYLAALGSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 61  IRMGADRAVI---RAQVRQGERQQLVELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
              D S     +  +A  G ++   R+++I AL  L  +  ++       L+L       
Sbjct: 177 RSMDMSTLDVWDQHLARAGAELLARRLDLIAALQPLADKAYEQLAPGGGPLALEYKPSAP 236

Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +  +   L  +    L D RK +     TL+GPHR DL++    +     + S GE   
Sbjct: 237 GEAHTREDLYAQLTAALADARKQEIERGVTLVGPHRDDLLLKL-GQLPAKGYASHGESWS 295

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
             + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   D  
Sbjct: 296 YALALRLASYDLLRAE-GNEPVLILDDVFAELDARRRERLAELVA-PGEQVLVTAAVDDD 353

Query: 354 VFDSLNETAKFMRISNHQA 372
           V   L        +S+   
Sbjct: 354 VPHVL--AGARFTVSDGAV 370


>gi|260774539|ref|ZP_05883452.1| DNA recombination and repair protein RecF [Vibrio metschnikovii CIP
           69.14]
 gi|260610445|gb|EEX35651.1| DNA recombination and repair protein RecF [Vibrio metschnikovii CIP
           69.14]
          Length = 359

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 153/369 (41%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN  +  +   +     +G NG GKT++LEAI  L  GR F+ +    V
Sbjct: 1   MPLTRLVVQQFRNIKACDMTLSSGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNECSELFVHGRFLNSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +    +RR F+D  VF   P        F+RL + RN LL          S
Sbjct: 118 IHPEGFELLTDGPKQRRAFIDWGVFHSQPAFFDAWGRFKRLNKQRNALLKTAKSYRE-IS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +I+  R   +  +   + E + +   P   +SLT +             
Sbjct: 177 YWDQELAQLAEQIDQWRQIYVEHMKK-VAEALCQSFLPEFSISLTYYRGWDKQTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L +    D +   T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YKEILQNNFARDQLLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D +   +K
Sbjct: 288 QHLTELTGKQCIYLIDDFASELDSQRRQRLADCLKATGAQVFVSSITESQVTDMIEPNSK 347

Query: 364 FMRISNHQA 372
              + +   
Sbjct: 348 MFHVEHGTI 356


>gi|83941667|ref|ZP_00954129.1| recombination protein F [Sulfitobacter sp. EE-36]
 gi|83847487|gb|EAP85362.1| recombination protein F [Sulfitobacter sp. EE-36]
          Length = 365

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 132/367 (35%), Positives = 198/367 (53%), Gaps = 14/367 (3%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + + +  L +S FR++    +  D +     G NG GKTNILEA+S LSPGRG RR+S +
Sbjct: 2   SGLYLSQLTLSHFRSHKRAVIDCDTRPVSIFGPNGAGKTNILEAVSLLSPGRGLRRSSAS 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D+TR      +   A +  +  + ++ I  E    R VR     D        L +  R+
Sbjct: 62  DMTRRPEALGWKITAHLRSLGQIHEVEIWSEAGAARQVRI----DGKATAQTGLGRIARV 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL+PSMDR++   +  RRRFLDRM  +  P H  + + +E+ MR RNRLL +   + SW
Sbjct: 118 LWLIPSMDRLWIEGAEGRRRFLDRMTLSFLPDHADQSLAYEKAMRERNRLLKDMVREPSW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             ++E QMAE G  I+  RV  + A++    +   +  FP   L L              
Sbjct: 178 YVALEQQMAEAGSAIHANRVAALQAITE--AQAQAETAFPTATLDLIC--------DMPT 227

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E   + L D R  D  + RTLIGPHR+DL   Y  K +     STGEQK +LV + LA
Sbjct: 228 TAEGLRQALADNRMRDLSAGRTLIGPHRADLEGVYAAKDVPARDCSTGEQKALLVSLILA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +AR ++   G  P+LLLDE++AHLD ++R AL+  ++ +G+Q +MTGT + +FD+L   A
Sbjct: 288 NARALAADFGAPPLLLLDEVAAHLDANRRAALYDELSALGAQAWMTGTGEELFDTLGPRA 347

Query: 363 KFMRISN 369
           + + ++ 
Sbjct: 348 QRLEVTE 354


>gi|21222284|ref|NP_628063.1| recombination protein F [Streptomyces coelicolor A3(2)]
 gi|256786616|ref|ZP_05525047.1| recombination protein F [Streptomyces lividans TK24]
 gi|289770509|ref|ZP_06529887.1| recombination protein F [Streptomyces lividans TK24]
 gi|548717|sp|P36176|RECF_STRCO RecName: Full=DNA replication and repair protein recF
 gi|436025|gb|AAA65213.1| putative [Streptomyces coelicolor A3(2)]
 gi|8247658|emb|CAB92996.1| DNA replication protein [Streptomyces coelicolor A3(2)]
 gi|289700708|gb|EFD68137.1| recombination protein F [Streptomyces lividans TK24]
 gi|1093582|prf||2104262B recF gene
          Length = 373

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 95/379 (25%), Positives = 166/379 (43%), Gaps = 20/379 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     I+LE    R+ R  ++N        ++   +R   
Sbjct: 61  VRMGAE---RAVIRAQVRQGERQQLIELELNPGRANRA-RVNRSSQVKPRDVLGIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
              D S     +  +A  G ++   R+++I ++  L  +  ++       ++L       
Sbjct: 177 RTMDLSTLDVWDQHLARAGAELLAQRLDLIASVQPLADKAYEQLAPGGGPVALEYKPSAP 236

Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +  +   L E+    L + RK +     TL+GPHR DL++          + S GE   
Sbjct: 237 GEAHTREDLYEQLMAALAEARKQEIERGVTLVGPHRDDLLLKLGSLPAK-GYASHGESWS 295

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
             + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   D  
Sbjct: 296 YALALRLASFDLLRAE-GNEPVLVLDDVFAELDARRRERLAELVA-PGEQVLVTAAVDDD 353

Query: 354 VFDSLNETAKFMRISNHQA 372
           V   L        ++    
Sbjct: 354 VPHVL--AGARFTVAEGTV 370


>gi|110677618|ref|YP_680625.1| recombination protein F [Roseobacter denitrificans OCh 114]
 gi|109453734|gb|ABG29939.1| DNA replication and repair protein RecF, putative [Roseobacter
           denitrificans OCh 114]
          Length = 366

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 135/365 (36%), Positives = 200/365 (54%), Gaps = 11/365 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++   R   D +     G NG GKTNILEA+S LSPGRG RRAS  D+
Sbjct: 3   LHLTDLMVSHFRSHRVARFALDQRPVALFGPNGAGKTNILEAVSLLSPGRGLRRASAQDM 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           TR      +   A+V  +    ++        + + R ++IN         L +  R+ W
Sbjct: 63  TRRPEALGWKITAQVMSLGQHQEVETW---SQEGAARQVRINGKTA-AQTALGRVSRVLW 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+PSMDR++   +  RRRFLDRM  + +P H    + +E+ MR RNRLL     + SW  
Sbjct: 119 LIPSMDRLWIEGAEGRRRFLDRMTLSFEPGHADATLAYEKAMRERNRLLKNMVREPSWYQ 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E QMA+ GV ++  R   +  L+    +      FP  +L L        D      +
Sbjct: 179 ALELQMAQAGVVVDQNRRMALRQLA--AAQSDATTAFPAAELEL-----IHNDAPLPDGE 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                   D R  D  + RTL+GPHR+DLI  Y  K +     STGEQK +LV + LA+A
Sbjct: 232 TALRDAFADSRSRDLAAGRTLVGPHRADLIGTYRAKGVAARDCSTGEQKALLVSLILANA 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++  +G AP+LLLDE++AHLD D+R AL+  +T +G+Q +MTGT+KS+FD+L + A++
Sbjct: 292 RALAQDSGAAPLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTEKSLFDTLGDGAQY 351

Query: 365 MRISN 369
             I+ 
Sbjct: 352 FEITE 356


>gi|254477354|ref|ZP_05090740.1| DNA replication and repair protein RecF [Ruegeria sp. R11]
 gi|214031597|gb|EEB72432.1| DNA replication and repair protein RecF [Ruegeria sp. R11]
          Length = 365

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 134/366 (36%), Positives = 203/366 (55%), Gaps = 11/366 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L  D +     G NG GKTNILEA+S  SPGRG RRAS AD+
Sbjct: 2   LALTALTLSHFRSHLRADLHLDGRPVAIHGANGAGKTNILEAVSLFSPGRGLRRASAADM 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A +       ++    E       R ++I++     +D L +  R+ W
Sbjct: 62  ARRPEELGWKLRAELRAGRQTYEVETWSEAG---KARQVKIDNKSASQID-LGEICRVVW 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+P+MDR++   +  RRRFLDR+V + DP H    + +E+ MR RNRLL E   D++W  
Sbjct: 118 LIPAMDRLWIEGAEGRRRFLDRIVLSFDPGHAEATLAYEKAMRERNRLLKEQVRDAAWYR 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +E+QMA+ G +I+ AR   ++ L   + +   +  FP  +L L    DG    +   L+
Sbjct: 178 VLESQMAQAGHRIHAARTAAVDRLR--LAQEAAETAFPAAELELIQS-DGGLPDNAADLQ 234

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +A+    GR  D  + RTL+GPHR+DL+  Y  K +     STGEQK +LV + LA+A
Sbjct: 235 ESFAE----GRFRDLAAGRTLLGPHRTDLLGTYAAKGLPARDCSTGEQKALLVSLILANA 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R +    G APILLLDE+SAHLD ++R AL++ +  +G+Q +MTGT    F   +  A+ 
Sbjct: 291 RALIAAGGAAPILLLDEVSAHLDVNRRAALYQEILGLGAQAWMTGTGPEQFAEFDGQAQM 350

Query: 365 MRISNH 370
           + + + 
Sbjct: 351 LCVQDG 356


>gi|82779229|ref|YP_405578.1| recombination protein F [Shigella dysenteriae Sd197]
 gi|309784250|ref|ZP_07678889.1| DNA replication and repair protein recF [Shigella dysenteriae 1617]
 gi|97180962|sp|Q329B8|RECF_SHIDS RecName: Full=DNA replication and repair protein recF
 gi|81243377|gb|ABB64087.1| ssDNA and dsDNA binding, ATP binding [Shigella dysenteriae Sd197]
 gi|308927757|gb|EFP73225.1| DNA replication and repair protein recF [Shigella dysenteriae 1617]
          Length = 357

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSMLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNESGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    +++ + +   K+  P   L+ +     + +       
Sbjct: 176 PWDKELILLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L    + D     T  GPH++DL +   D A      S G+ K+++  + LA  
Sbjct: 229 -EYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|312871309|ref|ZP_07731407.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           3008A-a]
 gi|311093323|gb|EFQ51669.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           3008A-a]
          Length = 373

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++
Sbjct: 1   MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +          A + G     +I   L+       +   IN +  + +      +    
Sbjct: 61  IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D 
Sbjct: 116 FSPEDLSLIKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNAYLKQISSKKASDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237
            + + +  Q+A L  ++   RV  ++ L     +     +     L +     F +    
Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEK 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   + ++        +  +     TL+GPHR DL V + +K     + S G+Q+ +++
Sbjct: 236 DSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356
            I LA   L+       PILLLD++ + LD  ++  L   +    +Q F+T TD  S+  
Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQ 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +  RI +   
Sbjct: 354 EMIKIPRIFRIVSGTV 369


>gi|294638325|ref|ZP_06716578.1| DNA replication and repair protein RecF [Edwardsiella tarda ATCC
           23685]
 gi|291088578|gb|EFE21139.1| DNA replication and repair protein RecF [Edwardsiella tarda ATCC
           23685]
          Length = 361

 Score =  308 bits (789), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 90/371 (24%), Positives = 152/371 (40%), Gaps = 16/371 (4%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ +  L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      
Sbjct: 3   RMALTRLMIRDFRNIESADLAPSSGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSQQAGR 62

Query: 64  VTRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           V R    +F     R++ G E    + +    + D  VR   I+      V EL + L +
Sbjct: 63  VIRHDCATFI-LHGRIDAGGEREWAVGLSKNRQGDSKVR---IDGSDGHKVAELAQMLPM 118

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             + P    + +G    RR FLD   F  D        +  RL++ RN  L +     S 
Sbjct: 119 QLITPEGFTLLNGGPKYRRAFLDWGCFHGDGDFFTAWSNLRRLLKQRNAALRQ-VTRYSQ 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + ++  L  K++  R     A++  I      +  P   LS +       +     
Sbjct: 178 IRPWDQELVPLANKVSALRAAYSEAIAQDIAATCS-QFLPEYALSFSFMRGWDRES---- 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
              EY + L    + D     T +GPH++D  +   D        S G+ K+++  + LA
Sbjct: 233 ---EYGELLERHFERDRALTYTALGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLA 288

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNET 361
               ++  +G   + L+D+ ++ LD  +R  L   +   G+Q+F++  +     D ++E 
Sbjct: 289 QGEYLTRHSGRQCLYLIDDFASELDAGRRRLLAERLKSTGAQVFVSAVNADQVGDMVDEK 348

Query: 362 AKFMRISNHQA 372
            K  R+   + 
Sbjct: 349 GKMFRVEQGKI 359


>gi|312872636|ref|ZP_07732701.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091678|gb|EFQ50057.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           2062A-h1]
          Length = 373

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++
Sbjct: 1   MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +          A + G     +I   L+       +   IN +  + +      +    
Sbjct: 61  IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D 
Sbjct: 116 FSPEDLSLIKGSPAFRRRFMDLEFGQINAEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237
            + + +  Q+A L  ++   RV  ++ L     +     +     L +     F +    
Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEK 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   + ++        +  +     TL+GPHR DL V + +K     + S G+Q+ +++
Sbjct: 236 DSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356
            I LA   L+       PILLLD++ + LD  ++  L   +    +Q F+T TD  S+  
Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQ 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +  RI +   
Sbjct: 354 EMIKIPRIFRIVSGTV 369


>gi|227873173|ref|ZP_03991464.1| recombination protein RecF [Oribacterium sinus F0268]
 gi|227841004|gb|EEJ51343.1| recombination protein RecF [Oribacterium sinus F0268]
          Length = 360

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 161/374 (43%), Gaps = 19/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  +RN   L+L    ++ I  GDN  GKTN+LEAI F S G+ FR     ++
Sbjct: 1   MIIESIELQNYRNIEKLKLPLGEKNNILYGDNAQGKTNLLEAIFFGSTGKSFRFCKDKEL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              G   +      + +G+    DI +K         + + I+   ++   EL     I 
Sbjct: 61  IHFGAEEAHLKMILKKKGISHRIDIHLK-----KNKSKGVAIDGFPVKKSSELFGLGNII 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
              P    +      ERRRF+D  +  +D  +   +  + ++++ RN+LL E YF     
Sbjct: 116 IFSPEDLSLIKNGPKERRRFIDLELCQLDKIYLYHLSMYNKVLQQRNKLLKELYFRPKLE 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               + + ++ + G  +   R + +  L   +     + +    +L L+   +       
Sbjct: 176 ETLFAWDEELVKHGKMVISLRRDFVENLRKKVENIHGEISGKREELLLSYEENVS----- 230

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              +E ++ +L   R+ +   + TL GPHR DL      + I    GS G+Q+   + + 
Sbjct: 231 ---EENFSLQLEKNREAEKKQQTTLSGPHRDDLSFQINGQDIR-HFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   L+       PILLLD++ + LD+ ++N L   + ++ S I  TG ++ V      
Sbjct: 287 LAEIDLVRERIQDNPILLLDDVFSELDQKRQNFLLEQLGNLQSLITCTGLEELVKHRFPI 346

Query: 361 TAKFMRISNHQALC 374
                 + N Q  C
Sbjct: 347 D-HVFYVENGQVQC 359


>gi|320539856|ref|ZP_08039515.1| putative gap repair protein [Serratia symbiotica str. Tucson]
 gi|320030042|gb|EFW12062.1| putative gap repair protein [Serratia symbiotica str. Tucson]
          Length = 361

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 152/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEA+  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIEAADLALVPGFNFLVGANGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P F     R++G E    + +    + +  VR   I+      V EL + L +  
Sbjct: 61  IRHEQPEF-VLHGRIDGAEREISVGLSKNRQSESKVR---IDGSDSHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  DP         +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNDPGFFTAWSHLKRLLKQRNAALRQ-VSRYAQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + Q+  L  +I+  R +   A+++ I      +  P   LS +     + +       
Sbjct: 176 AWDQQLIPLAERISEWRAKYSEAIAADITATCA-QFLPEFALSFSFQRGWEKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GPH++D  +      +     S G+ K+++  + LA  
Sbjct: 229 -DYGELLERLFERDRTLTYTAAGPHKADFRIRAAGTPVE-DLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             ++  +G   + L+D+ ++ LD  +R  L   +    +Q+F++    + V D   E  K
Sbjct: 287 EFLTRQSGRRCLYLIDDFASELDIGRRRLLADRLKATQAQVFVSAVSAEQVTDMAGEKGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|260574427|ref|ZP_05842431.1| DNA replication and repair protein RecF [Rhodobacter sp. SW2]
 gi|259023323|gb|EEW26615.1| DNA replication and repair protein RecF [Rhodobacter sp. SW2]
          Length = 366

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 132/372 (35%), Positives = 197/372 (52%), Gaps = 12/372 (3%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + + I  L++S FR++ + RL FD +    VG NG GKTN+LEA+S LSPGRG RRA   
Sbjct: 2   SGLAITSLSLSHFRSHRAARLHFDGRPVALVGPNGAGKTNVLEAVSLLSPGRGLRRAGVD 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++ R      +   A + G+    ++    E    R VR     D        L +  R+
Sbjct: 62  EIARRPEAMGWKVGADLRGIGAAHEVETWAEAGQARQVRI----DGKHATQAMLGRIARM 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WLVP+MDR++   +  RRRFLDRM  +  P H   ++ +E+ MR RNRLL +   D+ W
Sbjct: 118 LWLVPAMDRLWIEAAEGRRRFLDRMTLSFAPDHAEAVLAYEKAMRDRNRLLKDQVTDAHW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              +EAQMA  G  I   R   +  L  L  +   +  FP   L++        +     
Sbjct: 178 YGVLEAQMAASGAAIMAHRRLAVARL--LAAQVGAETAFPQADLAIVA------EGDLPE 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             +  A+   +GR+ D  + RTLIGPHR+DL   +  K +     STGEQK +L+ + LA
Sbjct: 230 TTDALAQAFAEGRRRDLAAGRTLIGPHRADLAARFAAKDVAADQCSTGEQKALLISLILA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +AR ++   G APILLLDE++AHLD D+R AL+  +  +G+Q  MTGT   +FD+L    
Sbjct: 290 NARALAADLGVAPILLLDEVAAHLDADRRAALYDEICALGAQALMTGTGAELFDTLGARG 349

Query: 363 KFMRISNHQALC 374
           +   +++   + 
Sbjct: 350 QTFAVADEAGVS 361


>gi|56552480|ref|YP_163319.1| recombination protein F [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762427|ref|ZP_04760505.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|56544054|gb|AAV90208.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373021|gb|EER62679.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 376

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 137/376 (36%), Positives = 205/376 (54%), Gaps = 8/376 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L++ +FR++  +RL  +A   I  G+NGVGKTNILEAIS LSPGRGFR +   D+
Sbjct: 1   MFISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            R      F+  A++  +E    I   +I +      S R +++N V     + L++ L 
Sbjct: 61  VRREGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTT-SANALSEWLA 119

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDS 180
           I WL P+MDR+F   +  RRRFLDR+   I P H R    +E  MR RN+LL+ E  +D 
Sbjct: 120 ILWLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGYDP 179

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--FDQ 238
            W   +E  MAE    I +AR ++++ LS  I +  +   F    L+L   +D +     
Sbjct: 180 LWLDGLEQIMAEQATHILLARRQLVDLLSEEIAKQ-EDGLFAKADLALEEGVDSRDLVTH 238

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   +           R  D+   RTL G HR+DL V +  KA+  A  STGEQK +L+G
Sbjct: 239 NSEEIMPLLQNIWQKSRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQSSTGEQKALLLG 298

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA   LI+   G  P+LLLDE++AHLD  +R  LF I+   G Q++MTGT+ S+F++ 
Sbjct: 299 LVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLFETA 358

Query: 359 NETAKFMRISNHQALC 374
            E A + ++   + + 
Sbjct: 359 GEAACYFQLDKGEIIS 374


>gi|229530200|ref|ZP_04419589.1| DNA recombination and repair protein RecF [Vibrio cholerae
           12129(1)]
 gi|229332333|gb|EEN97820.1| DNA recombination and repair protein RecF [Vibrio cholerae
           12129(1)]
          Length = 363

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 157/368 (42%), Gaps = 12/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLSRLMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            +      F      E         + +     R     ++I     + + +L + L + 
Sbjct: 61  IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +    +RR F+D  VF  +P        F+RL + RN LL          
Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S  + ++A L  +I+  R   +N L S + E + +   P   + L  +   + DQ     
Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQLKS-VAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              Y   L    + D     T  GP+++DL +      +     S G+ K+++  + +A 
Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
            + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++
Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350

Query: 363 KFMRISNH 370
           K   +++ 
Sbjct: 351 KTFHVAHG 358


>gi|261341640|ref|ZP_05969498.1| hypothetical protein ENTCAN_08108 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315997|gb|EFC54935.1| DNA replication and repair protein RecF [Enterobacter cancerogenus
           ATCC 35316]
          Length = 357

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    SF     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQESF-VLHGRLQGAERETAIGLSKDKQGDSKVR---IDGTDGHKVAELALLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYAQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    ++  + +   K+  P   L+ +     + +       
Sbjct: 176 PWDLELIPLAEQISRWRAEYSAGIAEDMADTC-KQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|269137361|ref|YP_003294061.1| recombinational DNA repair ATPase [Edwardsiella tarda EIB202]
 gi|267983021|gb|ACY82850.1| recombinational DNA repair ATPase [Edwardsiella tarda EIB202]
 gi|304557462|gb|ADM40126.1| DNA recombination and repair protein RecF [Edwardsiella tarda
           FL6-60]
          Length = 358

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 83/369 (22%), Positives = 152/369 (41%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLVIRDFRNIEDADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++   G  ++++ L  +D +    ++I+      V EL + L +  
Sbjct: 61  IRHDCAAF-VLHGRIDDGGGR-ELAVGLS-KDRQGDSKVRIDGSDGHKVAELAQMLPMQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  D        +  R+++ RN  L +     +   
Sbjct: 118 ITPEGFTLLNGGPKYRRAFLDWGCFHGDRGFFTAWNNLRRVLKQRNAALRQ-VTRYAQIR 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +++  R     A++  I      +  P   LS +       +       
Sbjct: 177 PWDQELVPLAEQVSALRAAYSEAIAQDIAATCS-QFLPEYALSFSFMRGWDRES------ 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 230 -DYAALLERHFERDRALTYTALGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
             ++  +G   + L+D+ ++ LD  +R  L   +   G+Q+F++  +     D ++E  K
Sbjct: 288 EYLTRHSGRQCLYLIDDFASELDAGRRRLLAERLKATGAQVFVSAVNADQVGDMVDEKGK 347

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 348 MFRVEQGKI 356


>gi|15640046|ref|NP_062598.1| recombination protein F [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|147675554|ref|YP_001218398.1| recombination protein F [Vibrio cholerae O395]
 gi|153819847|ref|ZP_01972514.1| recF protein [Vibrio cholerae NCTC 8457]
 gi|153821947|ref|ZP_01974614.1| recF protein [Vibrio cholerae B33]
 gi|227080251|ref|YP_002808802.1| recF protein [Vibrio cholerae M66-2]
 gi|229508299|ref|ZP_04397803.1| DNA recombination and repair protein RecF [Vibrio cholerae BX
           330286]
 gi|229508862|ref|ZP_04398353.1| DNA recombination and repair protein RecF [Vibrio cholerae B33]
 gi|229515947|ref|ZP_04405404.1| DNA recombination and repair protein RecF [Vibrio cholerae TMA 21]
 gi|229517133|ref|ZP_04406579.1| DNA recombination and repair protein RecF [Vibrio cholerae RC9]
 gi|229606573|ref|YP_002877221.1| recombination protein F [Vibrio cholerae MJ-1236]
 gi|254225546|ref|ZP_04919155.1| recF protein [Vibrio cholerae V51]
 gi|254851579|ref|ZP_05240929.1| DNA replication and repair protein recF [Vibrio cholerae MO10]
 gi|298501199|ref|ZP_07010998.1| recombination protein F [Vibrio cholerae MAK 757]
 gi|13959488|sp|Q9KVX4|RECF_VIBCH RecName: Full=DNA replication and repair protein recF
 gi|172047499|sp|A5F493|RECF_VIBC3 RecName: Full=DNA replication and repair protein recF
 gi|254790498|sp|C3LP87|RECF_VIBCM RecName: Full=DNA replication and repair protein recF
 gi|9654405|gb|AAF93192.1| recF protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|125621866|gb|EAZ50191.1| recF protein [Vibrio cholerae V51]
 gi|126509608|gb|EAZ72202.1| recF protein [Vibrio cholerae NCTC 8457]
 gi|126520567|gb|EAZ77790.1| recF protein [Vibrio cholerae B33]
 gi|146317437|gb|ABQ21976.1| recF protein [Vibrio cholerae O395]
 gi|227008139|gb|ACP04351.1| recF protein [Vibrio cholerae M66-2]
 gi|227011983|gb|ACP08193.1| recF protein [Vibrio cholerae O395]
 gi|229346196|gb|EEO11168.1| DNA recombination and repair protein RecF [Vibrio cholerae RC9]
 gi|229347047|gb|EEO12009.1| DNA recombination and repair protein RecF [Vibrio cholerae TMA 21]
 gi|229354137|gb|EEO19069.1| DNA recombination and repair protein RecF [Vibrio cholerae B33]
 gi|229354572|gb|EEO19494.1| DNA recombination and repair protein RecF [Vibrio cholerae BX
           330286]
 gi|229369228|gb|ACQ59651.1| DNA recombination and repair protein RecF [Vibrio cholerae MJ-1236]
 gi|254847284|gb|EET25698.1| DNA replication and repair protein recF [Vibrio cholerae MO10]
 gi|297540071|gb|EFH76133.1| recombination protein F [Vibrio cholerae MAK 757]
          Length = 363

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 83/368 (22%), Positives = 156/368 (42%), Gaps = 12/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLSRLMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            +      F      E         + +     R     ++I     + + +L + L + 
Sbjct: 61  IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +    +RR F+D  VF  +P        F+RL + RN LL          
Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S  + ++A L  +I+  R   +N L   + E + +   P   + L  +   + DQ     
Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              Y   L    + D     T  GP+++DL +      +     S G+ K+++  + +A 
Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
            + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++
Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350

Query: 363 KFMRISNH 370
           K   +++ 
Sbjct: 351 KTFHVAHG 358


>gi|121587253|ref|ZP_01677026.1| recF protein [Vibrio cholerae 2740-80]
 gi|153802501|ref|ZP_01957087.1| recF protein [Vibrio cholerae MZO-3]
 gi|229520186|ref|ZP_04409613.1| DNA recombination and repair protein RecF [Vibrio cholerae TM
           11079-80]
 gi|262189753|ref|ZP_06048108.1| DNA recombination and repair protein RecF [Vibrio cholerae CT
           5369-93]
 gi|297581952|ref|ZP_06943872.1| recombination protein recF [Vibrio cholerae RC385]
 gi|121548499|gb|EAX58555.1| recF protein [Vibrio cholerae 2740-80]
 gi|124121971|gb|EAY40714.1| recF protein [Vibrio cholerae MZO-3]
 gi|229342780|gb|EEO07771.1| DNA recombination and repair protein RecF [Vibrio cholerae TM
           11079-80]
 gi|262034367|gb|EEY52752.1| DNA recombination and repair protein RecF [Vibrio cholerae CT
           5369-93]
 gi|297533819|gb|EFH72660.1| recombination protein recF [Vibrio cholerae RC385]
          Length = 363

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 83/368 (22%), Positives = 156/368 (42%), Gaps = 12/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            +      F      E         + +     R     ++I     + + +L + L + 
Sbjct: 61  IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +    +RR F+D  VF  +P        F+RL + RN LL          
Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S  + ++A L  +I+  R   +N L   + E + +   P   + L  +   + DQ     
Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              Y   L    + D     T  GP+++DL +      +     S G+ K+++  + +A 
Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
            + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++
Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350

Query: 363 KFMRISNH 370
           K   +++ 
Sbjct: 351 KTFHVAHG 358


>gi|297558989|ref|YP_003677963.1| DNA replication and repair protein RecF [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843437|gb|ADH65457.1| DNA replication and repair protein RecF [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 377

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 94/374 (25%), Positives = 160/374 (42%), Gaps = 21/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +++FR+Y    +      ++FVG NG GKTN++EAI +++     R +S   +
Sbjct: 1   MYVSHLQLADFRSYREALVEMGPGVSVFVGANGQGKTNLVEAIGYVATLGSHRVSSDTPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+P       R + +     + + LE    R+ R  +IN        E+   LR   
Sbjct: 61  VRQGAPRAI---VRAKVVRDERSMVVDLELNPGRANRA-RINQAPAGRPREVLGILRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------E 175
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDDLLVARAPRMAGVRSDYDRVLKQRNALLKSASGRMFRQR 176

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFPHIKLSLTGFL 232
              D S     ++ +AE G ++  AR+E++  L   I E          P +    +G +
Sbjct: 177 SAPDLSTLEVWDSHLAETGAELLAARLELVEELRPRIAEAYAGLTDSGGPAVPDYRSGAV 236

Query: 233 DGKFDQSF--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
               +       L E     + + R  +     +L+GPHR DL++          + S G
Sbjct: 237 PEGVEPPTGRPQLVETLRAAMAEARDRELQRGVSLVGPHRDDLVLRLGGMPAK-GYASQG 295

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           E     + + LA   L+  + G  P+L+LD++ A LD ++R  L   V D   Q+ +T  
Sbjct: 296 ESWSYALSLKLAAFDLL-RSDGDDPVLILDDVFAELDSERRRRLAERVGDAE-QVLVTAA 353

Query: 351 DKSVFDSLNETAKF 364
                    + A+F
Sbjct: 354 VPEDIPKELDGARF 367


>gi|261368841|ref|ZP_05981724.1| DNA replication and repair protein RecF [Subdoligranulum variabile
           DSM 15176]
 gi|282569111|gb|EFB74646.1| DNA replication and repair protein RecF [Subdoligranulum variabile
           DSM 15176]
          Length = 367

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 161/372 (43%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +++ RN A   L  D   T+  G NG GKTN+LEA+  L+ G+ FR A  A++
Sbjct: 1   MRLEHLELTDHRNIAHAVLDPDPNLTVLCGPNGQGKTNLLEAVWLLTGGKSFRGAKDAEL 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   S    F   +G E    +++       R  R  ++N V       L  + +  
Sbjct: 61  IRRGCEFSVLEGFFETDGSEKTIRLTVGA-KGSQRPGRTAKLNGVDQGRAAALAGNFQAV 119

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181
              P +  +  G    RRRFLD  +  +   +   +  + RL+  +N LL       +  
Sbjct: 120 VFEPDLLALVKGGPEGRRRFLDSALCQVFRPYLVALRRYMRLVAQKNALLKSYDITPNGA 179

Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               +   Q+A+ G +I   R + + AL+    +   + +    + SL          + 
Sbjct: 180 LLLDAYNEQLAQYGGQIMAHRQKFVEALAPAAAQNYAEISHGAEEFSLRYQCCAAAPTAD 239

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                  A+KL   R  +  +   L GPHR DL +    +   I  GS G+Q+  ++ + 
Sbjct: 240 AL-----AEKLAALRSAELRAGFCLTGPHREDLDLQLDGQPARI-FGSQGQQRSCVLAMK 293

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA A ++    G  P+LLLD++ + LD+D++  L   + +   Q  +T  D + F     
Sbjct: 294 LAEATVVGEFFGQHPVLLLDDVLSELDDDRQTYLLTRMGE--HQTIVTTCDTAAFA--RT 349

Query: 361 TAKFMRISNHQA 372
             K + +   QA
Sbjct: 350 NGKIVYVKGGQA 361


>gi|229524915|ref|ZP_04414320.1| DNA recombination and repair protein RecF [Vibrio cholerae bv.
           albensis VL426]
 gi|229338496|gb|EEO03513.1| DNA recombination and repair protein RecF [Vibrio cholerae bv.
           albensis VL426]
          Length = 363

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 83/368 (22%), Positives = 156/368 (42%), Gaps = 12/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            +      F      E         + +     R     ++I     + + +L + L + 
Sbjct: 61  IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +    +RR F+D  VF  +P        F+RL + RN LL          
Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S  + ++A L  +I+  R   +N L   + E + +   P   + L  +   + DQ     
Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              Y   L    + D     T  GP+++DL +      +     S G+ K+++  + +A 
Sbjct: 235 ---YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
            + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++
Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADGLKGTGAQVFVSSITESQVADMLDESS 350

Query: 363 KFMRISNH 370
           K   +++ 
Sbjct: 351 KTFHVAHG 358


>gi|239624130|ref|ZP_04667161.1| DNA replication and repair protein RecF [Clostridiales bacterium
           1_7_47_FAA]
 gi|239520516|gb|EEQ60382.1| DNA replication and repair protein RecF [Clostridiales bacterium
           1_7_47FAA]
          Length = 361

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 159/372 (42%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  +RNY  L + F+    I  GDN  GKTNILEA+      +  + A   D+
Sbjct: 1   MIIESIELKNYRNYQELHMEFNQGTNILYGDNAQGKTNILEAVYVCCTSKSHKSAKDRDI 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     S      R   +    D+ +K         + + IN V IR   EL     + 
Sbjct: 61  IRFDQDESHIKLQIRKNNVPYRIDMHLK-----KNKPKGIAINGVPIRKASELFGIANVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           +  P    I      ERRRF+D  +  ++  +   ++ + +++  RN+LL E +F   + 
Sbjct: 116 FFSPEDLNIIKNGPSERRRFIDMELCQLNKLYVHSLVQYNKVLLQRNKLLKELFFKPEYE 175

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+   G ++   R E I+ L+ +I +     +     + ++           
Sbjct: 176 ETLDVWDMQLVNYGKEVIRFRREFIDRLNEIIQDIHLSLSGNKEAIRISY--------EP 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L++++ + L   R  D   + TL GPHR D+        I    GS G+Q+   + + 
Sbjct: 228 YTLEDQFEQTLKKNRPQDMKQKTTLSGPHRDDISFIVNGIDIR-RFGSQGQQRTAALSLK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   L+   +   PILLLD++ + LD  ++N L   + DI + I  TG D  V +  + 
Sbjct: 287 LSELELVKAVSRDNPILLLDDVLSELDSSRQNHLLSAIQDIQTMITCTGLDDFVNNRFHI 346

Query: 361 TAKFMRISNHQA 372
             K  ++ +   
Sbjct: 347 D-KIFKVIDGTV 357


>gi|83950588|ref|ZP_00959321.1| recombination protein F [Roseovarius nubinhibens ISM]
 gi|83838487|gb|EAP77783.1| recombination protein F [Roseovarius nubinhibens ISM]
          Length = 369

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 129/365 (35%), Positives = 193/365 (52%), Gaps = 11/365 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L  D +     GDNG GKTN++EA+S +SPGRG RRA+  D+
Sbjct: 4   LYLSELKLSHFRSHLGSALQLDPRPVAIHGDNGSGKTNLIEAVSLISPGRGLRRAAAQDM 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +     +  +  + ++ I  E     + R  +I+      V  L +  R+ W
Sbjct: 64  GRQPEALGWKLRGVLHSLHQVHELEIWSE---GGAARQTRIDGKPAAQVA-LARIARVLW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+PSMDR++   +  RRRFLDRMV +  P H    + +E+ MR RNRLL +   D  W  
Sbjct: 120 LIPSMDRLWIEGAEGRRRFLDRMVMSFVPDHADVTLAYEKAMRERNRLLKDQVRDGHWYV 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E QMAE G+ I   R  +I+ L+    +      FP   L+L        + +    +
Sbjct: 180 ALERQMAEAGLAIQANRQRVIDRLAQ--AQEGAATAFPAADLTLE-----MAEGALPDGE 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EY   L +GR+ D  + RTL+GPHR+DL   Y  K +     STGEQK +LV + LA+ 
Sbjct: 233 AEYRDALSEGRRRDLAAGRTLLGPHRADLQGVYAAKGVAAKDCSTGEQKALLVSLILANG 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R +    G  PILLLDE++AHLD  +R AL+  +  +GSQ +MTGT   +F  L   A+ 
Sbjct: 293 RALREDFGAPPILLLDEVAAHLDAGRRAALYDEICALGSQAWMTGTGPELFAELGARAQH 352

Query: 365 MRISN 369
           + +  
Sbjct: 353 VEVRE 357


>gi|312873299|ref|ZP_07733354.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           2052A-d]
 gi|311091179|gb|EFQ49568.1| DNA replication and repair protein RecF [Lactobacillus iners LEAF
           2052A-d]
          Length = 373

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 159/376 (42%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++
Sbjct: 1   MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +          A + G     +I   L+       +   IN +  + +      +    
Sbjct: 61  IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D 
Sbjct: 116 FSPEDLSLIKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237
            + + +  Q+A L  ++   RV  ++ L     +     +     L +     F +    
Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEK 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   + ++        +  +     TL+GPHR DL V + +K     + S G+Q+ +++
Sbjct: 236 DSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFD 356
            I LA   L+       PILLLD++ + LD  ++  L   +    +Q F+T TD  S+  
Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQ 353

Query: 357 SLNETAKFMRISNHQA 372
            + +  +  RI +   
Sbjct: 354 EMIKIPRIFRIVSGTV 369


>gi|238018220|ref|ZP_04598646.1| hypothetical protein VEIDISOL_00044 [Veillonella dispar ATCC 17748]
 gi|237864691|gb|EEP65981.1| hypothetical protein VEIDISOL_00044 [Veillonella dispar ATCC 17748]
          Length = 366

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 164/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  + + F+ +  +  G NG GKTNILE+I   + G+  R    +D+
Sbjct: 1   MRIDSLQLFQFRNYKDVTIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +        + E  +    ++IKL  +     + +++ND  I    EL   L    
Sbjct: 61  LMFNAEEA-GIVVKFEKKDTPQKVNIKLFRQGP---KDIRLNDTKI-SQKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN +L E     +   
Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAILKEYRGKQNIPL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+A++   I   R+E +  ++ LI    +K       L++        + S    
Sbjct: 176 EEWDLQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMDNGSLEYT 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE + +++      D     T +GPHR DL   + D       GS G+Q+  ++ + L+ 
Sbjct: 236 KEGFYERIKAALPQDRHRMTTSVGPHRDDLRF-FSDAMDLKKFGSQGQQRTAVLSLKLSE 294

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
              I +  G  P+LLLD++ + LDE +R  L + +     Q F+T TD   F  L  + +
Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDESRRANLLQFI-HKRIQTFITTTDIHDFKDLK-SVQ 352

Query: 364 FMRISNHQA 372
           F+     + 
Sbjct: 353 FISCEGGKV 361


>gi|317494669|ref|ZP_07953081.1| DNA replication and repair protein RecF [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917271|gb|EFV38618.1| DNA replication and repair protein RecF [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 358

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 152/370 (41%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLTIRDFRNIESADLAPAEGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     F     R++ G E    + +      D  VR   I+      V EL + L + 
Sbjct: 61  IRHDQNEF-VLHGRIDTGAERELSVGLSKSRAGDSKVR---IDGSDGHKVAELAQMLPMQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +G    RR FLD   F  DP       + +RL++ RN  L +     S  
Sbjct: 117 LITPEGFTLLNGGPKFRRAFLDWGCFHSDPGFFVAWSNLKRLLKQRNAALRQ-VTRYSQL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + ++  L  +I+  R +   A++  I      +  P   L+ +       +      
Sbjct: 176 RPWDQELIPLAERISALRAQYSAAIAEDISATCA-QFLPEFALTFSFQRGWDKES----- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +Y + L    + D     T +GPH++D  +      +     S G+ K+++  + LA 
Sbjct: 230 --DYVELLERQFERDRALTYTAVGPHKADFRIRAEGTPVE-DLLSRGQLKLLMCALRLAQ 286

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362
              ++  +G   + L+D+ ++ LD  +R  L   +   G+Q+F++    + V D ++E  
Sbjct: 287 GEYLTRHSGRRCLYLIDDFASELDTGRRRLLADRLKATGAQVFVSAVSAEQVSDMVDEKG 346

Query: 363 KFMRISNHQA 372
           K  R+   + 
Sbjct: 347 KMFRVEQGKI 356


>gi|319936687|ref|ZP_08011100.1| DNA replication and repair protein recF [Coprobacillus sp. 29_1]
 gi|319808244|gb|EFW04809.1| DNA replication and repair protein recF [Coprobacillus sp. 29_1]
          Length = 369

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 164/373 (43%), Gaps = 17/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  + +  FRNY    + F     IF+G N  GKTN+LEAI  LS  + F+     + 
Sbjct: 1   MKINHIELKNFRNYKDCSVDFAPFINIFIGKNAQGKTNLLEAIYILSLSKSFKTKVIEEF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                      FA++ G     +  I LE    +  +   IN   I+   +   +L +  
Sbjct: 61  IYFNED-----FAKIHGRVNSHEKDIDLEVVLSKYGKKAIINHKEIKKTSDYVGYLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
            +P    +  G    RR+ +D  +  I P +   +  + +L++ RN+ L     +     
Sbjct: 116 FIPEDLMLIKGSPRLRRKLMDMEISKISPIYMYNLNKYNKLLKERNKYLKMLHEKHRRYD 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  QMA L V +   R+E ++ L+ +        +    KL +  +     D S+
Sbjct: 176 EYLDVLSEQMARLQVDLIKKRIEFVDLLNDISSTMYDYISLHKEKLRIE-YKCIYKDLSY 234

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             + E+Y K      + D    +T+ G H+ D+++   DK   +A+ S G+Q+ +++ I 
Sbjct: 235 EGILEKYQK----NYQRDISYSQTVDGLHKDDMLMSLDDKD-AVAYASQGQQRSIVLAIK 289

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLN 359
           +    LI    G  PILLLD++ + LD+ ++  L  ++     Q F+T T    V   + 
Sbjct: 290 IGLLELIKKEIGEYPILLLDDVLSELDDVRKTKLLNLIQGK-VQTFLTSTSIDGVHHQVI 348

Query: 360 ETAKFMRISNHQA 372
           + AK + I + Q 
Sbjct: 349 DMAKKIMIEDGQV 361


>gi|116326858|ref|YP_796578.1| recombinational DNA repair ATPase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116329805|ref|YP_799523.1| recombinational DNA repair ATPase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|122282419|sp|Q04WF5|RECF_LEPBJ RecName: Full=DNA replication and repair protein recF
 gi|122285291|sp|Q056V0|RECF_LEPBL RecName: Full=DNA replication and repair protein recF
 gi|116119602|gb|ABJ77645.1| Recombinational DNA repair ATPase [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116123494|gb|ABJ74765.1| Recombinational DNA repair ATPase [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 365

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/372 (26%), Positives = 172/372 (46%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FR+Y  L L F+++   FVGDNG GKTN+LEAI  LS  + FR +  +++
Sbjct: 1   MFLKHLTLQNFRSYEELSLDFNSRLIFFVGDNGEGKTNLLEAICMLSWLKSFRESEDSNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS ++F    +++G +  + + +    +     R L+ N   ++   +L        
Sbjct: 61  IRWGSENYF-LRGKIKGDQKESVLEVGFTAKPTVK-RKLKFNQEEVKKRTDLIGKFITVL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P   +I  G   ERR+F+D  + + DP +   ++++ ++++ RN LL  G  D+S  S
Sbjct: 119 LTPMDLKIIEGGPAERRKFIDAFISSFDPFYLECLLEYNKILKHRNALLKTGISDASHLS 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ E GV I   R E++  L+S     + K +    +L +    + K        K
Sbjct: 179 IWDRKLIEKGVLILNKRKEIVFGLNSFYQPNLNKLSGGKDELEMIYGPNVKD-------K 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +E+ +KL      D     T +G HR DL +   DK      GS G+++  ++ +  A  
Sbjct: 232 DEFVEKLGRNLGKDLRLGYTSVGIHRDDLFIG-ADKRDITEFGSQGQKRSTVIALKAATF 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS----LNE 360
               N     P+LL+D++   LD  +R     +V + G Q F T TD          L +
Sbjct: 291 NYYRNVLDTMPVLLIDDVIRELDVKRREYFVDLVINAG-QAFFTTTDLEGIQDYVGKLKD 349

Query: 361 TAKFMRISNHQA 372
             +   I     
Sbjct: 350 QKQIFLIQQGNI 361


>gi|260753853|ref|YP_003226746.1| recombination protein F [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|258553216|gb|ACV76162.1| DNA replication and repair protein RecF [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 376

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 136/376 (36%), Positives = 205/376 (54%), Gaps = 8/376 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L++ +FR++  +RL  +A   I  G+NGVGKTNILEAIS LSPGRGFR +   D+
Sbjct: 1   MFISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            R      F+  A++  +E    I   +I +      S R +++N V     + L++ L 
Sbjct: 61  VRREGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTT-SANALSEWLA 119

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDS 180
           I WL P+MDR+F   +  RRRFLDR+   I P H R    +E  MR RN+LL+ E  +D 
Sbjct: 120 ILWLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGYDP 179

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--FDQ 238
            W   +E  MAE    I +AR ++++ LS  I +  +   F    L+L   +D +     
Sbjct: 180 LWLDGLEQIMAEQATHILLARRQLVDLLSEEIAKQ-EDGLFAKADLALEEGVDSRDLVTH 238

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   +           R  D+   RTL G HR+DL V +  KA+  A  STGEQK +L+G
Sbjct: 239 NSEEIMPLLQNIWQKSRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQSSTGEQKALLLG 298

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA   LI+   G  P+LLLDE++AHLD  +R  LF I+   G Q++MTGT+ S+F++ 
Sbjct: 299 LVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLFETA 358

Query: 359 NETAKFMRISNHQALC 374
            + A + ++   + + 
Sbjct: 359 EDAACYFQLDKGEIIS 374


>gi|242237463|ref|YP_002985644.1| recombination protein F [Dickeya dadantii Ech703]
 gi|242129520|gb|ACS83822.1| DNA replication and repair protein RecF [Dickeya dadantii Ech703]
          Length = 361

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR    A V
Sbjct: 1   MALTRLLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     R+ G E    + +      D +VR   I+      V EL + L I  
Sbjct: 61  IRHDQAEFI-LHGRIAGAERERSVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL+R RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFMAWSNLKRLLRQRNAALRQVNH-YGQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R E   A+++ I      +  P   LS +       +       
Sbjct: 176 AWDQELVPLAERISQWRAEYSAAIATDIASTCA-QFLPEFSLSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D     T +GPH++D  +     A+     S G+ K+++  + LA  
Sbjct: 229 -DYAELLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++  T + + D + E  K
Sbjct: 287 EFLTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|294794200|ref|ZP_06759336.1| DNA replication and repair protein RecF [Veillonella sp. 3_1_44]
 gi|294454530|gb|EFG22903.1| DNA replication and repair protein RecF [Veillonella sp. 3_1_44]
          Length = 366

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 166/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  +++ F+ +  +  G NG GKTNILE+I   + G+  R    +D+
Sbjct: 1   MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +        + E  +    ++IKL  +     + +++ND  I    EL   L    
Sbjct: 61  LMFNAEEA-GIVVKFEKKDTPQKVNIKLFRQGP---KDIRLNDTKI-SQKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN +L E    ++   
Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+A++   I   R+E +  ++ LI    +K       L++        + S    
Sbjct: 176 EEWDLQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMDNGSLEYT 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE + +++      D     T +GPHR DL   + D       GS G+Q+  ++ + L+ 
Sbjct: 236 KEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQGQQRTAVLSLKLSE 294

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
              I +  G  P+LLLD++ + LDE +R  L + +     Q F+T TD   F  L  + +
Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDESRRTNLLQFI-HKRIQTFITTTDIHDFKDLK-SVQ 352

Query: 364 FMRISNHQA 372
           F+     Q 
Sbjct: 353 FISCEGGQV 361


>gi|320009753|gb|ADW04603.1| DNA replication and repair protein RecF [Streptomyces flavogriseus
           ATCC 33331]
          Length = 376

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 96/373 (25%), Positives = 161/373 (43%), Gaps = 20/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A  +G        I+LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGAERAVVRAAVTQGERSQL---IELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233
              D S     +  +  +G ++   R+++I  L  L  +           + L     + 
Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYADVAPGGGPVTLEYRSSVG 236

Query: 234 GKFD--QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
            + +  ++   L E+    L   RK +     TL+GPHR DL++          + S GE
Sbjct: 237 DEVEPARTREELYEQVMAALVQARKQEIERGVTLVGPHRDDLVLGLRGMPAK-GYASHGE 295

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
                + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   
Sbjct: 296 SWSYALALRLASYDLLRTE-GNEPVLVLDDVFAELDARRRERLAELVA-PGEQVLVTAAV 353

Query: 352 KSVFDSLNETAKF 364
                 +   A++
Sbjct: 354 DDDVPGVLAGARY 366


>gi|157144342|ref|YP_001451661.1| recombination protein F [Citrobacter koseri ATCC BAA-895]
 gi|166220702|sp|A8ACL2|RECF_CITK8 RecName: Full=DNA replication and repair protein recF
 gi|157081547|gb|ABV11225.1| hypothetical protein CKO_00046 [Citrobacter koseri ATCC BAA-895]
          Length = 357

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 152/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    SF     R++G E    I +  +   D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQESF-VLHGRLQGEERETAIGLTKDKLGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEVGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    ++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSAGIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  ++ +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVLDMSDKNSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|170748658|ref|YP_001754918.1| DNA replication and repair protein RecF [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655180|gb|ACB24235.1| DNA replication and repair protein RecF [Methylobacterium
           radiotolerans JCM 2831]
          Length = 384

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 140/369 (37%), Positives = 201/369 (54%), Gaps = 4/369 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + +++  L   +FRN+A L L   A+    VG+NG GKTN+LEA+S   PGRG RRA +A
Sbjct: 14  SSLRVTRLIARDFRNHADLELTPRARFVALVGENGAGKTNLLEALSLFVPGRGLRRAEFA 73

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHL 120
            + R G P  F+    ++       +   LE    D R+ R  +I+          ++ L
Sbjct: 74  AMARSGGPGGFAVSLTLDREGAEHRLGTGLEPPGPDGRASRLCRIDGATAASPVAFSEFL 133

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+ WL P +D +F G + +RRRFLDR+V A+D  H  R+   ER +R RNRLL E   D 
Sbjct: 134 RVVWLTPDLDGLFRGAAGDRRRFLDRLVLAVDAAHGARVSAMERALRSRNRLLEERPDDD 193

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQ- 238
            W  ++E ++AELGV + +AR E    L  LI E     + FP   + L G LD      
Sbjct: 194 RWLDAVEREVAELGVAVALARRETAERLDRLIAETRDDAQPFPWAAIRLEGDLDDLVAVW 253

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                ++ Y   L +GR  D  + RTLIGP  SDL+V +  K +     STGEQK +L+G
Sbjct: 254 PAIEAEDRYRMALRNGRNRDRAAGRTLIGPQSSDLVVRHGPKDVPAGTASTGEQKALLIG 313

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LAHARL+   +G AP++LLDE++AHLD  +R  LF  +  +  Q++MTG D   F   
Sbjct: 314 LVLAHARLVRAMSGIAPLILLDEVAAHLDPRRRAGLFEALEALPGQVWMTGADPGAFAQA 373

Query: 359 NETAKFMRI 367
               + +RI
Sbjct: 374 GTRTEVLRI 382


>gi|239942667|ref|ZP_04694604.1| recombination protein F [Streptomyces roseosporus NRRL 15998]
 gi|239989126|ref|ZP_04709790.1| recombination protein F [Streptomyces roseosporus NRRL 11379]
 gi|291446128|ref|ZP_06585518.1| recombination protein F [Streptomyces roseosporus NRRL 15998]
 gi|291349075|gb|EFE75979.1| recombination protein F [Streptomyces roseosporus NRRL 15998]
          Length = 376

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 96/381 (25%), Positives = 162/381 (42%), Gaps = 21/381 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGITAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A  +G        ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGAERAVIRAAVTQGERSQL---VELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
             P    +  G   ERRRFLD +V A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
              D S     +  +  +G ++   R+++I  L  L  +           ++L       
Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVALEYRSSVG 236

Query: 236 FDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
            D    + ++E  ++L       RK +     TL+GPHR DL++          + S GE
Sbjct: 237 EDVGPESTRDELYEQLMAALAGVRKQEIERGVTLVGPHRDDLLLGLRGMPAK-GYASHGE 295

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
                + + LA   L+ +  G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   
Sbjct: 296 SWSYALALRLASYELLRSE-GNEPVLVLDDVFAELDARRRERLAELVA-PGEQVLVTAAV 353

Query: 352 KSVFDSLNETAKFMRISNHQA 372
                 +        +S  + 
Sbjct: 354 ADDVPGVL-AGTRYAVSAGEV 373


>gi|294792394|ref|ZP_06757541.1| DNA replication and repair protein RecF [Veillonella sp. 6_1_27]
 gi|294456293|gb|EFG24656.1| DNA replication and repair protein RecF [Veillonella sp. 6_1_27]
          Length = 366

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 92/369 (24%), Positives = 165/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  +++ F+ +  +  G NG GKTNILE+I   + G+  R    +D+
Sbjct: 1   MRIDSLQLFQFRNYKDVQIQFNPEIIVLYGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        + E  +    ++IKL  +     + +++ND  I    EL   L    
Sbjct: 61  LMFNVEEA-GIVVKFEKKDTPQKVNIKLFRQGP---KDIRLNDTKI-SQKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN +L E    ++   
Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+A++   I   R+E +  ++ LI    +K       L++        + S    
Sbjct: 176 EEWDLQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMDNGSLEYT 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE + +++      D     T +GPHR DL   + D       GS G+Q+  ++ + L+ 
Sbjct: 236 KEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQGQQRTAVLSLKLSE 294

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
              I +  G  P+LLLD++ + LDE +R  L + +     Q F+T TD   F  L  + +
Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDESRRTNLLQFI-HKRIQTFITTTDIHDFKDLK-SVQ 352

Query: 364 FMRISNHQA 372
           F+     Q 
Sbjct: 353 FISCEGGQV 361


>gi|298246029|ref|ZP_06969835.1| DNA replication and repair protein RecF [Ktedonobacter racemifer
           DSM 44963]
 gi|297553510|gb|EFH87375.1| DNA replication and repair protein RecF [Ktedonobacter racemifer
           DSM 44963]
          Length = 401

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 168/396 (42%), Gaps = 31/396 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FRNY  L L        F G+N  GKTN+LEA+S L+    F  +S  +V
Sbjct: 1   MYLTHLTLEYFRNYKHLDLTLGPGLFFFCGENAQGKTNLLEAVSMLATATSFHASSDREV 60

Query: 65  TRIGSPSFFS-TFARVEGMEGLADISI---------------------KLETRDDRSVRC 102
               +P   +    RV   E  A I I                      L+   +   + 
Sbjct: 61  VNWQAPDHVAHLQGRVSRHEDDAQIEISVFDPTPPTFSQDDTSQQTSRGLDLPANTPRKR 120

Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
            ++N V  R +D +   +++    P    +  G   ERRRF DR +  + P + + ++ +
Sbjct: 121 YKLNGVPRRTID-IIGQMKVVLFAPVDLHLVDGSPEERRRFFDRALCQVSPHYCQALVRY 179

Query: 163 ERLMRGRNRLLTEGY---FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
            +++  R+ LL        D      ++ Q+ +L  +I   R  M+ +++ L     Q  
Sbjct: 180 RKVVTQRSALLKRIRDHQEDPRLIDYLDDQLTQLANQIMHERHHMLTSINQLANPLQQAI 239

Query: 220 NFPHIKLSLTGFLDGKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
           +    +L +        D+S      ++ Y ++L   R+ ++M    L+GPHR DL    
Sbjct: 240 SGGRERLEIIYRPSFSVDESLSLPEAQKHYQQQLQAIRRKETMQGVCLLGPHRDDLEFLV 299

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
               + +++GS G+Q+   +   LA    + + TG  P+LLLD++ + LD  +R  L + 
Sbjct: 300 NGVNM-LSYGSRGQQRTAALSTKLAELAFMRSNTGDEPVLLLDDVFSELDAVRRQYLLQE 358

Query: 338 VTDIGSQIFMTGTDKSVF-DSLNETAKFMRISNHQA 372
           V     Q+ +T TD   F   + + A    + +   
Sbjct: 359 VLSHQ-QVLLTATDLESFPPEIAQKAHIYHVQHGNI 393


>gi|329938635|ref|ZP_08288031.1| DNA recombination and repair protein RecF [Streptomyces
           griseoaurantiacus M045]
 gi|329302126|gb|EGG46018.1| DNA recombination and repair protein RecF [Streptomyces
           griseoaurantiacus M045]
          Length = 373

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 102/380 (26%), Positives = 168/380 (44%), Gaps = 22/380 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  DA  T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYAHVEVPLDAGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGAERAI---VRAQVRQGERQQLLELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176

Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233
              D S     +  +A  G ++   R+++I AL  L  +  ++       + L       
Sbjct: 177 RSLDLSTLDVWDQHLARAGAELLARRLDLIAALRPLTDKAYEQLAPGGGPVGLEYRPSAP 236

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           G+   +   L E+    L + RK +     TL+GPHR DL++    +     + S GE  
Sbjct: 237 GE-AHTREDLHEQLLAALAEARKQEIERGVTLVGPHRDDLLLKL-GQLPAKGYASHGESW 294

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDK 352
              + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   D 
Sbjct: 295 SYALALRLASYDLLRAE-GNEPVLVLDDVFAELDVRRRERLAELVA-PGEQVLVTAAVDD 352

Query: 353 SVFDSLNETAKFMRISNHQA 372
            V D L        +S    
Sbjct: 353 DVPDVL--AGARYTVSGGTV 370


>gi|254467269|ref|ZP_05080680.1| DNA replication and repair protein RecF [Rhodobacterales bacterium
           Y4I]
 gi|206688177|gb|EDZ48659.1| DNA replication and repair protein RecF [Rhodobacterales bacterium
           Y4I]
          Length = 365

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 128/365 (35%), Positives = 200/365 (54%), Gaps = 11/365 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L FD +     G+NG GKTNILEA+S  SPGRG RRAS A++
Sbjct: 2   LALTALTLSHFRSHLRAELRFDGRPVAIYGNNGAGKTNILEAVSLFSPGRGLRRASAAEM 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +     +       ++    E     + R ++I++     +  L +  R+ W
Sbjct: 62  ARQPEALGWKLKGELRAPRQAYEVETWSE---GGAARQVKIDNKSASQLA-LGQVARVVW 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+P+MDR++   +  RRRFLDR+  + +P H    + +E+ MR RNRLL E   D++W  
Sbjct: 118 LIPAMDRLWIEAAEGRRRFLDRIALSFEPGHAEASLVYEKAMRERNRLLKEQVRDAAWYR 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +E +MA  G +I+ ARV+ +  L     E   +  FP  +L L        + S  + +
Sbjct: 178 VLEDRMAAAGHRIHAARVQAVELLQQAQAE--AETAFPAAELELLQS-----EGSMPSSE 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++ + L + R  D  + RTL+GPHR+DL+  Y  K I     STGEQK +LV + LA+A
Sbjct: 231 TDFKEALEESRFRDLAAGRTLVGPHRTDLLGTYRAKGIPAKDCSTGEQKALLVSLILANA 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  PILLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L   A+ 
Sbjct: 291 RALAQREGAPPILLLDEVAAHLDAGRRAALYDEICALGTQAWMTGTGPELFAELEGRAQV 350

Query: 365 MRISN 369
           + +S+
Sbjct: 351 LEVSD 355


>gi|303237205|ref|ZP_07323775.1| DNA replication and repair protein RecF [Prevotella disiens
           FB035-09AN]
 gi|302482592|gb|EFL45617.1| DNA replication and repair protein RecF [Prevotella disiens
           FB035-09AN]
          Length = 371

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 168/376 (44%), Gaps = 19/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N  +  L   A+   F+G NGVGKTN+L+A+ +LS  +       ++V
Sbjct: 1   MRLDKLSIINYKNIQAATLNLSAKLNCFIGHNGVGKTNLLDAVYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S  F          E +  ++  ++     + +  + N    + + E    L + +
Sbjct: 61  MCHESDFFVLEGDYTMDSEEIEQVTCGMKRG---TKKHFKRNRKAYKKLSEHIGLLPLIF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + PS   +  G S ERR+ +D ++   D  +   ++ + + ++ RN LL  E   D++  
Sbjct: 118 VSPSDISLIEGGSEERRKLMDVVISQYDRPYIETLLRYNKALQQRNSLLKQEEEPDTTLL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E QMAE G +I   R   +  L  +  E  Q  +    ++SL     G+        
Sbjct: 178 ELLEMQMAEYGTEIYKKRAAFVEQLVPVFQEIYQAISQNREQVSLEYISHGQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + +    +   R  D +   +L G H+ DL++      +    GS G+ K  ++ + LA 
Sbjct: 230 RGDLLDVIQRDRAKDRIMGYSLHGIHKDDLLMTLGGFPMKRE-GSQGQNKTFVLALKLAQ 288

Query: 304 ARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361
              +  T G   P+LLLD+I   LD D+   + ++V  D   QIF+T T++   D +  +
Sbjct: 289 FNFLKQTAGNRTPLLLLDDIFDKLDADRVEQIVKLVAGDSFGQIFITDTNRDHLDKILSS 348

Query: 362 A----KFMRISNHQAL 373
           +    K   + N + +
Sbjct: 349 SNFDYKLFAVENGEII 364


>gi|23428630|gb|AAM12398.1| recombinase F [Zymomonas mobilis subsp. mobilis CP4]
          Length = 376

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 136/376 (36%), Positives = 205/376 (54%), Gaps = 8/376 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L++ +FR++  +RL  +A   I  G+NGVGKTNILEAIS LSPGRGFR +   D+
Sbjct: 1   MFISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            R      F+  A++  +E    I   +I +      S R +++N V     + L++ L 
Sbjct: 61  VRREGDGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTT-SANALSEWLA 119

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDS 180
           I WL P+MDR+F   +  RRRFLDR+   I P H R    +E  +R RN+LL+ E  +D 
Sbjct: 120 ILWLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAIRQRNKLLSDEKGYDP 179

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--FDQ 238
            W   +E  MAE    I +AR ++++ LS  I +  +   F    L+L   +D +     
Sbjct: 180 LWLDGLEQIMAEQATHILLARRQLVDLLSEEIAKQ-EDGLFAKADLALEEGVDSRDLVTH 238

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   +           R  D+   RTL G HR+DL V +  KA+  A  STGEQK +L+G
Sbjct: 239 NSEEIMPLLQNIWQKSRTSDAAIGRTLQGVHRTDLKVTHHAKAMPAAQSSTGEQKALLLG 298

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA   LI+   G  P+LLLDE++AHLD  +R  LF I+   G Q++MTGT+ S+F++ 
Sbjct: 299 LVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLFETA 358

Query: 359 NETAKFMRISNHQALC 374
            E A + ++   + + 
Sbjct: 359 GEAACYFQLDKGEIIS 374


>gi|288932895|ref|YP_003436954.1| DNA replication and repair protein RecF [Klebsiella variicola
           At-22]
 gi|288887624|gb|ADC55942.1| DNA replication and repair protein RecF [Klebsiella variicola
           At-22]
          Length = 357

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E   A+   + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDLELIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  ++ +K
Sbjct: 287 EFLTRVSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEKGKI 355


>gi|206579462|ref|YP_002235888.1| DNA replication and repair protein RecF [Klebsiella pneumoniae 342]
 gi|290511691|ref|ZP_06551059.1| DNA replication and repair protein recF [Klebsiella sp. 1_1_55]
 gi|226737806|sp|B5XT53|RECF_KLEP3 RecName: Full=DNA replication and repair protein recF
 gi|206568520|gb|ACI10296.1| DNA replication and repair protein RecF [Klebsiella pneumoniae 342]
 gi|289775481|gb|EFD83481.1| DNA replication and repair protein recF [Klebsiella sp. 1_1_55]
          Length = 357

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E   A+   + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDLELIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  ++ +K
Sbjct: 287 EFLTRVSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEKGKI 355


>gi|152972607|ref|YP_001337753.1| recombination protein F [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|330005215|ref|ZP_08305174.1| DNA replication and repair protein RecF [Klebsiella sp. MS 92-3]
 gi|166220712|sp|A6TG02|RECF_KLEP7 RecName: Full=DNA replication and repair protein recF
 gi|150957456|gb|ABR79486.1| recombination protein F [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|328536347|gb|EGF62709.1| DNA replication and repair protein RecF [Klebsiella sp. MS 92-3]
          Length = 357

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 155/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQDAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E   A+   + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDLELIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  ++ +K
Sbjct: 287 EFLTRVSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEKGKI 355


>gi|332685538|ref|YP_004455312.1| DNA recombination and repair protein RecF [Melissococcus plutonius
           ATCC 35311]
 gi|332369547|dbj|BAK20503.1| DNA recombination and repair protein RecF [Melissococcus plutonius
           ATCC 35311]
          Length = 353

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 159/355 (44%), Gaps = 14/355 (3%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82
           + F     IF+G+N  GKTN+LE+I  L+  R  R  +  ++ +          A++ G 
Sbjct: 1   MNFSKNLNIFLGENAQGKTNLLESIYVLAMTRSHRTNNEKELIQWQE-----LQAKINGS 55

Query: 83  EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142
                 +I LE +     R  +IN +  + +      L +    P    +  G    RR+
Sbjct: 56  IDKYSGTIPLEIQLSNKGRKTKINYIEQKRLSAYIGQLNVILFAPEDLSLVKGPPQIRRK 115

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKIN 198
           F++  +  +D  +   ++ ++ +++ RN+ L +       D  +   +  Q+AE G K+ 
Sbjct: 116 FINMELGQVDLVYLHNLVQYQGVLKHRNQYLKQLAEKKEKDFLYLDILSEQLAEFGSKVL 175

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--SFCALKEEYAKKLFDGRK 256
           +AR+ +I  L     +  +K +    +L++T           +   L++E+ ++L + RK
Sbjct: 176 LARLSLIKKLEYWANQLHKKISHDKEQLTITYSSSITLPTILTQETLQQEFLRQLKENRK 235

Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
            +     T IGPHR DLI +  D+ + I +GS G+Q+   + I LA    +    G  PI
Sbjct: 236 RELFKMTTFIGPHRDDLIFNINDQNVQI-YGSQGQQRTTALSIKLAEIDWMHEELGEYPI 294

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFMRISNH 370
           LLLD++ + LD +++  L   +     Q F+T T+     D L        +   
Sbjct: 295 LLLDDVMSELDNERQLHLLETIEGK-VQTFLTTTNLEHLTDKLTVEPDIFTVHKG 348


>gi|182437496|ref|YP_001825215.1| recombination protein F [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|326778151|ref|ZP_08237416.1| DNA replication and repair protein recF [Streptomyces cf. griseus
           XylebKG-1]
 gi|226737838|sp|B1VPF3|RECF_STRGG RecName: Full=DNA replication and repair protein recF
 gi|178466012|dbj|BAG20532.1| putative DNA recombination and repair protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326658484|gb|EGE43330.1| DNA replication and repair protein recF [Streptomyces cf. griseus
           XylebKG-1]
          Length = 376

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 97/384 (25%), Positives = 165/384 (42%), Gaps = 21/384 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A  +G        I+LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGAERAVIRAAVTQGERSQL---IELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
              D S     +  +  +G ++   R+++I  L  L  +           ++L       
Sbjct: 177 RSMDLSTLDVWDQHLGRVGAELLAQRLDLIATLQPLADKAYGDVAPGGGPVALEYRSSVG 236

Query: 236 FDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
            D      ++E  ++L       RK +     TL+GPHR DL++          + S GE
Sbjct: 237 GDVGPARTRDELYEQLTAALVGVRKQEIERGVTLVGPHRDDLLLGLRGMPAK-GYASHGE 295

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
                + + LA   L+ +  G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   
Sbjct: 296 SWSYALALRLASYELLRSE-GNEPVLVLDDVFAELDARRRERLAELVV-PGEQVLVTAAV 353

Query: 352 KSVFDSLNETAKFMRISNHQALCI 375
                 +   A++  +S  +   +
Sbjct: 354 AEDVPGVLAGARY-AVSAGEVARV 376


>gi|15673957|ref|NP_268132.1| recombination protein F [Lactococcus lactis subsp. lactis Il1403]
 gi|281492578|ref|YP_003354558.1| DNA replication and repair protein RecF [Lactococcus lactis subsp.
           lactis KF147]
 gi|13959468|sp|Q9CE70|RECF_LACLA RecName: Full=DNA replication and repair protein recF
 gi|12725018|gb|AAK06073.1|AE006427_8 RecF protein [Lactococcus lactis subsp. lactis Il1403]
 gi|281376242|gb|ADA65733.1| DNA replication and repair protein RecF [Lactococcus lactis subsp.
           lactis KF147]
          Length = 358

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 155/370 (41%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K + +  FRNY  L+L F     IF+G N  GKTNILEAI FL+  R  R +   ++
Sbjct: 1   MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        +V G+   A  ++ LE +     R  + N +    + +    L+I  
Sbjct: 61  ISWSQQEM-----KVSGVVEKAHATVPLEVQLSPKGRIAKANHLKENRLADYIGQLKILM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
             P    +  G    RR+F+D  +  I   +    + + R ++ RN  L   +   D ++
Sbjct: 116 FAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDKDKIDKNF 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S ++ Q+AE G KI + R   I+ L     +  ++       L +    + K D     
Sbjct: 176 LSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTD----- 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
               ++K+L   +  D    +T +GPHR DL     +  +    GS G+Q+ V + I LA
Sbjct: 231 ----FSKELLSRQDHDIFRHQTSVGPHRDDLQFFINEINV-ADFGSQGQQRTVALSIKLA 285

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              LI   TG  PILLLD++ + LD  ++  L               T      +L E  
Sbjct: 286 EIDLIFEETGEYPILLLDDVMSELDNHRQLDLIETSLGKTQTFIT-TTTLDHLKNLPENL 344

Query: 363 KFMRISNHQA 372
               ++    
Sbjct: 345 SIFHVNAGTI 354


>gi|238917986|ref|YP_002931500.1| recombination protein F [Edwardsiella ictaluri 93-146]
 gi|259563363|sp|C5BHC7|RECF_EDWI9 RecName: Full=DNA replication and repair protein recF
 gi|238867554|gb|ACR67265.1| DNA replication and repair protein RecF [Edwardsiella ictaluri
           93-146]
          Length = 358

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 83/370 (22%), Positives = 147/370 (39%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLVIRDFRNIEEADLALAPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R    S F    R++   G    + +  + + D  VR   I+      V EL + L + 
Sbjct: 61  IRHDC-SAFVLHGRIDDGGGRERAVGLSKDRQGDSKVR---IDGSDGHKVAELAQMLPMQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +G    RR FLD   F  +        +  R+++ RN  L +     +  
Sbjct: 117 LITPEGFTLLNGGPKYRRAFLDWGCFHGERSFFTAWNNLRRVLKQRNAALRQ-VTRYAQI 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + ++  L  +++  R     A++  I      +  P   LS +       +      
Sbjct: 176 RPWDQELVPLAEQVSALRAAYSEAIAQDIAATCS-QFLPEYALSFSFMRGWDRES----- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +YA  L    + D     T  GPH++D  +   D        S G+ K+++  + LA 
Sbjct: 230 --DYAALLERHFERDRALTYTAQGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQ 286

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA 362
              ++  +G   + L+D+ ++ LD  +R  L   +   G+Q+F++  +     D ++E  
Sbjct: 287 GEYLTRHSGRQCLYLIDDFASELDAGRRRLLAERLKSTGAQVFVSAVNADQIGDMVDEKG 346

Query: 363 KFMRISNHQA 372
           K   +   + 
Sbjct: 347 KMFHVEQGKI 356


>gi|29830862|ref|NP_825496.1| recombination protein F [Streptomyces avermitilis MA-4680]
 gi|51316400|sp|Q82FD5|RECF_STRAW RecName: Full=DNA replication and repair protein recF
 gi|29607975|dbj|BAC72031.1| putative DNA recombination and repair protein [Streptomyces
           avermitilis MA-4680]
          Length = 373

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 98/379 (25%), Positives = 166/379 (43%), Gaps = 20/379 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +      ++LE    ++ R        +R  D L   +R   
Sbjct: 61  VRMGAERAII---RAQVRQDERRQLVELELNPGKANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALIKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKTAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
              D S     +  +A  G ++   R+++I AL  L  +  ++       ++L       
Sbjct: 177 RSMDLSTLDVWDQHLARAGAELLAQRLDLIAALQPLADKAYEQLAPGGGPIALEYKPSAP 236

Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +  +  AL E+    L + RK +     TL+GP R +L++    +     + S GE   
Sbjct: 237 GEAHTRDALYEQLMAALAEARKQEIERGVTLVGPQRDELLLKL-GQLPAKGYASHGESWS 295

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
             + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   D  
Sbjct: 296 YALALRLASYDLLRAE-GNEPVLVLDDVFAELDTRRRERLAELVA-PGEQVLVTAAVDDD 353

Query: 354 VFDSLNETAKFMRISNHQA 372
           V   L  T     +S    
Sbjct: 354 VPGVLAGT--RYTVSEGTV 370


>gi|238897210|ref|YP_002921958.1| recombination protein F [Klebsiella pneumoniae NTUH-K2044]
 gi|238549540|dbj|BAH65891.1| recombination protein F [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 357

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLSRLLIKDFRNIEHADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQDAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E   A+   + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDLELIPLAEQISRWRAEYSAAIVEDMADTCQ-QFLPEFTLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  ++ +K
Sbjct: 287 EFLTRVSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEKGKI 355


>gi|332884241|gb|EGK04509.1| hypothetical protein HMPREF9456_00836 [Dysgonomonas mossii DSM
           22836]
          Length = 369

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 162/377 (42%), Gaps = 21/377 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L+I  ++N     L    +   F+G NG+GKTN+L+AI +LS  +       +  
Sbjct: 1   MILERLSILNYKNIEQAELNLSPKINCFLGSNGMGKTNLLDAIYYLSFCKSHNNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETR-DDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R  +      FA ++G   L D   +       +  +  + N      + +    L + 
Sbjct: 61  IRHDAD-----FAVIQGWYVLGDKQEEFFCSLRRKQKKQFKRNKKEYERLSDHIGFLPLI 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + PS   + +G S ERR+F+D  +   D  +   +I + + ++ RN LL  + Y D + 
Sbjct: 116 MVSPSDTELINGGSDERRKFMDMFLSQFDKEYLHSLIRYNKALQQRNALLKTDSYIDETL 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+ E G  I   R + I     +   +       + K+ L    +  FD +   
Sbjct: 176 FDLWDEQLIEEGKIIYSKRKDFIEKFIPIFQRFYDFICLSNEKVELRY--ESHFDDA--- 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
              ++A+ L   R+ D +   T IG H+ DL +     +I    GS G+ K  +V + LA
Sbjct: 231 ---DFARSLKQKRERDRILGYTSIGVHKDDLDMQMDGYSIKRV-GSQGQNKTYVVALKLA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL--- 358
               +   T   P+LLLD+I   LD  +   + ++V D    QIF+T T++   D +   
Sbjct: 287 QFDFLRKATETTPVLLLDDIFDKLDSTRVEQIVKLVLDKDFGQIFVTDTNREHLDEILSH 346

Query: 359 -NETAKFMRISNHQALC 374
            N +     +S  + + 
Sbjct: 347 TNSSYHLYEVSGGEVVQ 363


>gi|260771049|ref|ZP_05879977.1| DNA recombination and repair protein RecF [Vibrio furnissii CIP
           102972]
 gi|260613938|gb|EEX39129.1| DNA recombination and repair protein RecF [Vibrio furnissii CIP
           102972]
 gi|315178624|gb|ADT85538.1| DNA replication and repair protein RecF [Vibrio furnissii NCTC
           11218]
          Length = 359

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 152/369 (41%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN  +  +   +     +G NG GKT++LEAI  L  GR F+      V
Sbjct: 1   MPLTRLIVQQFRNIKACDIPLSSGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSTLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I     + + +L + L +  
Sbjct: 61  IQNECSELFVHGRFLTSDQFELPIGINKQRDGSTEVK---IGGQSGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +    +RR F+D  VF  +         F+RL + RN LL          S
Sbjct: 118 IHPEGFELLTDGPKQRRAFIDWGVFHTEVAFFDAWGRFKRLNKQRNALLKTASSYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L   I+  R   +  +  +  E + +   P  +++L  +   + +       
Sbjct: 177 YWDQELARLAENIDQWRGAYVEQMKRVAEE-LCRTFLPEFEITLKYYRGWEKETP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y + L    + D +   T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YHEILQKNFERDQLLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D +   +K
Sbjct: 288 QHLTELTGKQCIYLIDDFASELDSQRRKRLADCLKATGAQVFVSSITESQVADMVEPNSK 347

Query: 364 FMRISNHQA 372
              + +   
Sbjct: 348 MFHVEHGTI 356


>gi|268593490|ref|ZP_06127711.1| DNA replication and repair protein RecF [Providencia rettgeri DSM
           1131]
 gi|291310912|gb|EFE51365.1| DNA replication and repair protein RecF [Providencia rettgeri DSM
           1131]
          Length = 364

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 156/369 (42%), Gaps = 12/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         +G NG GKT+ILEAI  L  GR FR      V
Sbjct: 1   MILSRLLIRDFRNIENADLSLANGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQANRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F          E   D+S+ L    D   + ++I+      + EL K L +  
Sbjct: 61  IRHEQEQFILHGKLSHLDEQRNDLSLGLSKNRDGDSK-VRIDGTDGHKIAELAKLLPMQL 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR F+D   F  DP       D +RL++ RN  L +         
Sbjct: 120 ITPEGFTLLNGGPKYRRAFIDWGCFHNDPLFFSVWSDLKRLLKQRNAALRQ-VTRYEQIR 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+A L  +I+  R   I  ++  I +  Q +  P   LS++       +       
Sbjct: 179 HWDKQLAPLSEQISQWRHNYIAGIAENIEQTCQ-QFLPEFSLSVSFQRGWDKEI------ 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y+++L    + D     T  GPH++DL +      +     S G+ K+++  + LA  
Sbjct: 232 -DYSEQLERQFERDRALTYTASGPHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQG 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
              ++ +G   + LLD+ ++ LD  +R  L   +    +Q+F++  T + V D ++  +K
Sbjct: 290 EFFTHQSGQRCLYLLDDFASELDAGRRQLLAARLKATQAQVFVSAITPEQVNDMIDANSK 349

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 350 MFSVEHGKI 358


>gi|1107710|emb|CAA61549.1| recF [Lactococcus lactis]
          Length = 357

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 155/370 (41%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K + +  FRNY  L+L F     IF+G N  GKTNILEAI FL+  R  R +   ++
Sbjct: 1   MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        +V G+   A  +I LE +     R  + N +    + +    L+I  
Sbjct: 61  ISWSQQEM-----KVSGVGEKAHATIPLEVQLSPKGRIAKANHLKENRLADYIGQLKILM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
             P    +  G    RR+F+D  +  I   +    + + R ++ RN  L   +   D ++
Sbjct: 116 FAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDKDKIDKNF 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S ++ Q+AE G KI + R   I+ L     +  ++       L +    + K D     
Sbjct: 176 LSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTD----- 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
               ++K+L   +  D    +T +GPHR DL     +  +    GS G+Q+ V + I LA
Sbjct: 231 ----FSKELLSRQDHDIFRHQTSVGPHRDDLQFFINEINV-ADFGSQGQQRTVALSIKLA 285

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              LI   TG  PILLLD++ + LD  ++  L               T      +L E  
Sbjct: 286 EIDLILEETGEYPILLLDDVMSELDNHRQLDLIETSLGKTQTFIT-TTTLDHLKNLPENL 344

Query: 363 KFMRISNHQA 372
               ++    
Sbjct: 345 SIFHVNAGTI 354


>gi|311277335|ref|YP_003939566.1| DNA replication and repair protein RecF [Enterobacter cloacae SCF1]
 gi|308746530|gb|ADO46282.1| DNA replication and repair protein RecF [Enterobacter cloacae SCF1]
          Length = 357

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 151/369 (40%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIRDFRNIESADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    SF     R++G      I +  +   D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQESF-VLHGRLQGETRETAIGLTKDKLGDSKVR---IDGTDGHKVAELALLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFNAWSNLKRLLKQRNAALRQ-VTRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    ++  + +   ++  P   L+ +     + +       
Sbjct: 176 PWDRELIPLAEQISAWRAEYSAGIADDMADTC-RQFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +E +K
Sbjct: 287 EFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 347 MFTVEKGKI 355


>gi|282848763|ref|ZP_06258158.1| putative recombination protein F [Veillonella parvula ATCC 17745]
 gi|282581549|gb|EFB86937.1| putative recombination protein F [Veillonella parvula ATCC 17745]
          Length = 366

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 166/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  +++ F+ +  +  G NG GKTNILE+I   + G+  R    +D+
Sbjct: 1   MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +        + E  +    ++IKL  +     + +++N+  I    EL   L    
Sbjct: 61  LMFNAEEA-GIVVKFEKKDTPQKVNIKLFRQGP---KDIRLNETKI-SQKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN +L E    ++   
Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+A++   I   R+E +  ++ LI    +K       L++        + S    
Sbjct: 176 EEWDLQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMDNGSLEYT 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE + +++      D     T +GPHR DL   + D       GS G+Q+  ++ + L+ 
Sbjct: 236 KEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQGQQRTAVLSLKLSE 294

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
              I +  G  P+LLLD++ + LDE +R  L + +     Q F+T TD   F  L  + +
Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDESRRTNLLQFI-HKRIQTFITTTDIHDFKDLK-SVQ 352

Query: 364 FMRISNHQA 372
           F+     Q 
Sbjct: 353 FISCEGGQV 361


>gi|325288204|ref|YP_004264385.1| DNA replication and repair protein RecF [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963605|gb|ADY54384.1| DNA replication and repair protein RecF [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 366

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 164/371 (44%), Gaps = 12/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L    FRNY+   + F     I VG NG GKTN+LE I +L  G+ +R    +++
Sbjct: 1   MLIHNLYFKNFRNYSEQEITFTNGINILVGSNGQGKTNVLEGIYYLLMGKSYRVNQESEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +F+     +       +    LE+  ++  + ++IN +  + + E    + + +
Sbjct: 61  IYWGQKNFY-----LRANFEAYERKYCLESYYEKGKKAIKINQLACQKLSEYVGMINVVF 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDSS 181
             P    I     +ERRRF+D ++  + P H   +  + R+++ ++ LL         + 
Sbjct: 116 FTPDDLNIIKSGPLERRRFIDLLLIQVKPAHISLLNTYIRILKQKSILLKRSLNKAAAND 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                  Q+ E G ++   R EM   L +   +   K    H  + L     G+  +S  
Sbjct: 176 QLLVWNEQLLETGSRVIRNRYEMTEKLQNQCGKMFSKVFGCHENMDLQYVSLGR--KSLD 233

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
                + + L   R  +   R  L+GPHR D+IV+   ++    + S G+Q+ +++ + L
Sbjct: 234 EALAYFPEALEKQRDAEIERRAVLVGPHRDDIIVNINGRSARY-YASQGQQRSLVLCLKL 292

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           A   +I+      PILLLD++ + LDE +R  L   +++   Q  +T TD    +   + 
Sbjct: 293 AEMEIINKEKEEYPILLLDDVLSELDEGRREYLMEYISNSNKQTMITTTDLGQIEKQKDP 352

Query: 362 AKFMRISNHQA 372
           A ++ +     
Sbjct: 353 AVYI-VKQGTI 362


>gi|152977691|ref|YP_001343320.1| recombination protein F [Actinobacillus succinogenes 130Z]
 gi|171472900|sp|A6VK88|RECF_ACTSZ RecName: Full=DNA replication and repair protein recF
 gi|150839414|gb|ABR73385.1| DNA replication and repair protein RecF [Actinobacillus
           succinogenes 130Z]
          Length = 358

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 158/367 (43%), Gaps = 14/367 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I  FRN A++ L FD      VG+NG GKT++LE+I +L  GR F+ +    +
Sbjct: 1   MAISRLIIENFRNLAAVDLEFDHGFNFLVGNNGSGKTSLLESIFYLGHGRSFKSSVSTRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P +F+   R+   E   + S+ L+ +    +  ++IN      + +L   L +  
Sbjct: 61  ITYDKP-YFTLHGRI--WEQQHEWSVGLQKQRKEGLTLVKINGEDGNKISDLAHLLPMQM 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F   P          RL++ RN  L + Y D +   
Sbjct: 118 ITPEGLTLLNGGPSYRRAFLDWGLFHHRPNFHSAWSALNRLLKQRNAALQQTY-DYTDLQ 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++++L  ++++ R +   AL   I E   +   P + + ++       +       
Sbjct: 177 VWDVELSKLAHQVSLWRTDYAEALRPEI-EQTCRLFLPELDIQVSFHQGWDKNT------ 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y   L +    D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 230 -DYGDLLRENFARDKHIGYTVSGPQKADFRFKANGFPVEDVL-SRGQLKLLMCALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             +      + I L+D+ ++ LDE KR  L   +    SQ+F+T  T + +     E  +
Sbjct: 288 EHLMVQKNRSCIFLIDDFASELDETKRGLLAERLRQSHSQVFVTAITAEQLKQMQPENHR 347

Query: 364 FMRISNH 370
              ++N 
Sbjct: 348 TFSVNNG 354


>gi|121727885|ref|ZP_01680944.1| recF protein [Vibrio cholerae V52]
 gi|121629829|gb|EAX62244.1| recF protein [Vibrio cholerae V52]
          Length = 363

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 82/368 (22%), Positives = 156/368 (42%), Gaps = 12/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLSRLMIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            +      F      E         + +     R     ++I     + + +L + L + 
Sbjct: 61  IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +    +RR F+D  VF  +P        F+RL + RN LL          
Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S  + ++A L  +I+  R   +N L   + E + +   P   + L  +   + DQ     
Sbjct: 180 SYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP---- 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              Y   L    + D     +  GP+++DL +      +     S G+ K+++  + +A 
Sbjct: 235 ---YQSILEKNFERDQQLGYSFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQ 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
            + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++
Sbjct: 291 GQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESS 350

Query: 363 KFMRISNH 370
           K   +++ 
Sbjct: 351 KTFHVAHG 358


>gi|302552698|ref|ZP_07305040.1| recombination protein F [Streptomyces viridochromogenes DSM 40736]
 gi|302470316|gb|EFL33409.1| recombination protein F [Streptomyces viridochromogenes DSM 40736]
          Length = 373

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 96/379 (25%), Positives = 164/379 (43%), Gaps = 20/379 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y  + +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYPRVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGAERAII---RAQVRQGDRQQLVELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYDRVLKQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
              D S     +  +A  G ++   R+++I  +  L  +  ++       ++L       
Sbjct: 177 RSMDMSTLDVWDQHLARAGAELLAQRLDLIATIQPLADKAYEQLAPGGGPVALEYKPSAP 236

Query: 236 FD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +  +   L E+    L + RK +     TL+GPHR DL +    +     + S GE   
Sbjct: 237 GEAHTREDLYEQLTAALAESRKQEIERGVTLVGPHRDDLQLKL-GQLPAKGYASHGESWS 295

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
             + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   D  
Sbjct: 296 YALALRLASYDLLRAE-GNEPVLVLDDVFAELDTRRRERLAELVA-PGEQVLVTAAVDDD 353

Query: 354 VFDSLNETAKFMRISNHQA 372
           V   L  +     +S    
Sbjct: 354 VPHVL--SGARYAVSEGAV 370


>gi|149186139|ref|ZP_01864453.1| recombinational DNA repair ATPase [Erythrobacter sp. SD-21]
 gi|148830170|gb|EDL48607.1| recombinational DNA repair ATPase [Erythrobacter sp. SD-21]
          Length = 359

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 136/368 (36%), Positives = 209/368 (56%), Gaps = 13/368 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++++ FRN+ +  L   A+  + VG+NG GKTN+LEA+S L+PGRG RRA+ AD+ +
Sbjct: 2   LDRISLTRFRNHEATELGATARFNLLVGENGAGKTNVLEALSLLAPGRGLRRANLADIVQ 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G    F   A +   EG              S R ++IN         L + + ++WL 
Sbjct: 62  HGVDEGFGVGASLLVDEGEPVRLATYSESAQPSRRRVRINGADA-SAAALGEWIALTWLT 120

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P+MD +F+G + +RRRF+DRM  A+DP H +    +E  +R RNRLL++    +S+W  +
Sbjct: 121 PAMDGLFTGPAADRRRFIDRMALALDPAHAQHAARYEGALRERNRLLSDDRPPESAWLDA 180

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           IEAQM E G ++   R  +++ L + I     K   P  + +LT    G          E
Sbjct: 181 IEAQMVEHGGRLIAGRAALVDTLMARIAHMPSK---PFARPALTYAPGG------ADSAE 231

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             ++ LF+GR+ D  ++RTL GPHR +L V +  K +  A  STGEQK +LV I LAHA 
Sbjct: 232 ALSQALFEGRQRDRAAQRTLAGPHRDELEVIHASKRVPAAQSSTGEQKAMLVAITLAHAG 291

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L +   G A ILLLDE++AHLD  +R ALF  +   G+Q++MTGT+ + FDS+ + A   
Sbjct: 292 LAAQ--GRAGILLLDEVAAHLDPVRRAALFDQLAASGAQVWMTGTEIAPFDSIADQAAVW 349

Query: 366 RISNHQAL 373
           +++  + +
Sbjct: 350 KVAGGRVI 357


>gi|313893465|ref|ZP_07827035.1| DNA replication and repair protein RecF [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313441908|gb|EFR60330.1| DNA replication and repair protein RecF [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 366

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 166/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  +++ F+ +  +  G NG GKTNILE+I   + G+  R    +D+
Sbjct: 1   MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +        + E  +    ++IKL  +     + +++ND  I    EL   L    
Sbjct: 61  LMFNAEEA-GIVVKFEKKDTPQKVNIKLFRQG---AKDIRLNDTKI-SQKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN +L E    ++   
Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNNIPL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+A++   I   R+E +  ++ LI    +K       L++        + S    
Sbjct: 176 EEWDLQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMENGSLEYT 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE + +++      D     T +GPHR DL   + D       GS G+Q+  ++ + L+ 
Sbjct: 236 KEGFYERIKAALPQDRHRLTTSVGPHRDDLRF-FSDAMDLKKFGSQGQQRTAVLSLKLSE 294

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
              I +  G  P+LLLD++ + LDE +R  L + +     Q F+T TD   F  L  + +
Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDESRRANLLQFI-HKRIQTFITTTDIHDFKDLK-SVQ 352

Query: 364 FMRISNHQA 372
           F+     + 
Sbjct: 353 FISCEGGKV 361


>gi|148656558|ref|YP_001276763.1| DNA replication and repair protein RecF [Roseiflexus sp. RS-1]
 gi|148568668|gb|ABQ90813.1| DNA replication and repair protein RecF [Roseiflexus sp. RS-1]
          Length = 398

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 89/399 (22%), Positives = 176/399 (44%), Gaps = 27/399 (6%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +  L++ +FRNY  L L  +    +  G N  GKT +LEAI FL+  R  R  +
Sbjct: 1   MVAGMHVSHLSLRDFRNYERLDLTLEPGVILLYGPNAAGKTTVLEAIYFLATTRSPRAGA 60

Query: 61  YADVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDDR--------SVRCLQIN 106
             ++ R  +        F      V   +G   + + ++ R D         +++ ++++
Sbjct: 61  DRELVRFEAQGDIGVPPFARLVCDVVRADGRVRLEVVVQRRSDEESPGSISPTIKTVRVD 120

Query: 107 DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
              +R +D L  +LR+    P+   + +G   ERRR+LD  +  I+ R+ R +  +++++
Sbjct: 121 RKTVRALD-LVGNLRVVLFTPADIALVTGAPAERRRYLDVTLSQIEGRYVRTLAHYQKVV 179

Query: 167 RGRNRLLTEG-------YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
           + RN LL           +     +  + ++A  G  +   R+  +  L++L      + 
Sbjct: 180 QQRNSLLRAWRDGRRPLRYAGDELAFWDRELAMAGAYLLRERLRAVVDLNALAGPLYCRM 239

Query: 220 NFPHIKLSLTGFLDGKFDQSFCA---LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
           +     L +T                +++ +   L   R  +    +TLIGPHR DL++ 
Sbjct: 240 SGSDTPLVVTYQSSVAGIDPASDSRMIEQAFLAHLVHLRDDEIGRGQTLIGPHRDDLLIT 299

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
             +  +   +GS G+Q+   + + L  A L+   TG  P+LLLD++ + LD ++R  +  
Sbjct: 300 VGNIPMGA-YGSRGQQRSATLALKLGEAELMRARTGDTPVLLLDDVLSELDAERRAYVQD 358

Query: 337 IVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQALC 374
           ++   G Q  +T T    F     + A+  R+ + +   
Sbjct: 359 VIERPGQQTIVTATGTDDFSVEFLKRARRWRVEDGRLYS 397


>gi|262040464|ref|ZP_06013707.1| DNA replication and repair protein RecF [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259042217|gb|EEW43245.1| DNA replication and repair protein RecF [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 357

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLSRLLIKDFRNIEHADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      V EL   + +  
Sbjct: 61  IRHEQDAF-VLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLVKQRNAALRQ-VSRYAQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E   A+   + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDLELIPLAEQISRWRAEYSAAVVEDMADTCQ-QFLPEFTLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D M   T  GPH++D  +   D A      S G+ K+++  + LA  
Sbjct: 229 -DYAEVLERNFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
             ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  ++ +K
Sbjct: 287 EFLTRVSGRRCLYLIDDFASELDDARRGLLSSRLKATQSQVFVSAISAEHVMDMSDKNSK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEKGKI 355


>gi|326407512|gb|ADZ64583.1| DNA replication and repair protein RecF [Lactococcus lactis subsp.
           lactis CV56]
          Length = 358

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 155/370 (41%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K + +  FRNY  L+L F     IF+G N  GKTNILEAI FL+  R  R +   ++
Sbjct: 1   MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        +V G+   A  ++ LE +     R  + N +    + +    L+I  
Sbjct: 61  ISWSQQEM-----KVSGVVEKAHATVPLEVQLSPKGRIAKANHLKENRLADYIGQLKILM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
             P    +  G    RR+F+D  +  I   +    + + R ++ RN  L   +   D ++
Sbjct: 116 FAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKERNAYLKFDKDKIDKNF 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S ++ Q+AE G KI + R   I+ L     +  ++       L +    + K D     
Sbjct: 176 LSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTD----- 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
               ++K+L   +  D    +T +GPHR DL     +  +    GS G+Q+ V + I LA
Sbjct: 231 ----FSKELLIRQDHDIFRHQTSVGPHRDDLQFFINEINV-ADFGSQGQQRTVALSIKLA 285

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              LI   TG  PILLLD++ + LD  ++  L               T      +L E  
Sbjct: 286 EIDLIFEETGEYPILLLDDVMSELDNHRQLDLIETSLGKTQTFIT-TTTLDHLKNLPENL 344

Query: 363 KFMRISNHQA 372
               ++    
Sbjct: 345 SIFHVNAGTI 354


>gi|254387093|ref|ZP_05002367.1| recombination protein F [Streptomyces sp. Mg1]
 gi|194345912|gb|EDX26878.1| recombination protein F [Streptomyces sp. Mg1]
          Length = 378

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 98/383 (25%), Positives = 164/383 (42%), Gaps = 23/383 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   +  D   T FVG NG GKTN++EAI +L+     R +S A +
Sbjct: 1   MHVSHLSLADFRSYARAEVPLDPGVTAFVGPNGQGKTNLVEAIGYLAVLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A  +G        ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGADRAVIRAAVTQGERQQL---VELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
             P    +  G   ERRRFLD +V A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233
              D S     +  +A  G ++   R+++I  +  L  +  ++       + L+      
Sbjct: 177 RSMDLSTLDVWDQHLARAGAELLAQRLDLIATMLPLADKAYEQLAPGGGPLGLAYKSSAG 236

Query: 234 GKFDQSFCALKEEYAK----KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
              D      +E   +     L D RK +     TL+GPHR D+++   +      + S 
Sbjct: 237 EAVDSGEARTREALYEVLLGALSDVRKQEIERGVTLVGPHRDDVLLRLGELPAK-GYASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE     + + LA   L+ +  G  P+L+LD++ A LD  +R  L  +V   G Q+ +T 
Sbjct: 296 GESWSYALALRLASYELLRSE-GAEPVLILDDVFAELDARRRERLAELVA-PGEQVLVTA 353

Query: 350 TDKSVFDSLNETAKFMRISNHQA 372
                   +   A+   +S  + 
Sbjct: 354 AVDDDVPGVLVGAR-FGVSGGEV 375


>gi|1074046|pir||I64106 recF protein - Haemophilus influenzae (strain Rd KW20)
          Length = 375

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 159/368 (43%), Gaps = 15/368 (4%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
            + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    
Sbjct: 16  NMAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNR 75

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +     P  F+ F +++  +    I ++   +  +    ++IN      + +L   L + 
Sbjct: 76  IISYDEP-HFTLFGQIQESQHQWSIGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQ 131

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+  
Sbjct: 132 LITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-I 190

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + ++A+L  +++  R E   ALS  I +  Q    P ++++++     + +      
Sbjct: 191 KIWDVELAKLAHQVSEWRAEYAEALSPEIEQTCQ-LFLPELEINVSFHQGWEKN------ 243

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA 
Sbjct: 244 -ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQ 301

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETA 362
              +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  
Sbjct: 302 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENK 361

Query: 363 KFMRISNH 370
           K   + N 
Sbjct: 362 KMFSVHNG 369


>gi|149202935|ref|ZP_01879906.1| recombination protein F [Roseovarius sp. TM1035]
 gi|149143481|gb|EDM31517.1| recombination protein F [Roseovarius sp. TM1035]
          Length = 369

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 203/370 (54%), Gaps = 11/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++ S RL+ DA+     G NG GKTN++EAIS LSPGRG RRA+  D+
Sbjct: 4   LYLSELTLSHFRSHKSGRLLLDARPVAIHGPNGAGKTNLIEAISLLSPGRGLRRAAAQDM 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A +  +  + ++    E     + R ++I+      +  L +  R+ W
Sbjct: 64  ARRPEALGWKITAILNSLHQVHEVETFAE---GTAARQVRIDSKTATQLA-LGRIARLLW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR++   +  RRRFLDRM  +  P H    + +++ MR RNRLL +   D+ W  
Sbjct: 120 LVPAMDRLWIEGADGRRRFLDRMTMSFIPAHAEVTLAYDKAMRERNRLLKDQVRDAQWYL 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E QMA+ G +I+  R   +  +  +  +   +  FP  +L LT       D +     
Sbjct: 180 ALERQMADAGAEIHANRQHALALI--MGAQMQAETAFPTAELELTQTEGEMPDSA----- 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           ++  + L + R  D M+ RTLIGPHR+DL   Y  K +  A  STGEQK +LV + LA+A
Sbjct: 233 DDLRQALAESRFRDLMAGRTLIGPHRADLYGVYAAKGVPAADCSTGEQKALLVSLILANA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  P+LLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L   A+ 
Sbjct: 293 RALARDFGAPPLLLLDEVAAHLDATRRAALYDEICALGAQAWMTGTGPELFSELGNRAQH 352

Query: 365 MRISNHQALC 374
           + +++   + 
Sbjct: 353 IHVTDTAGIS 362


>gi|320531088|ref|ZP_08032117.1| putative recombination protein F [Selenomonas artemidis F0399]
 gi|320136670|gb|EFW28623.1| putative recombination protein F [Selenomonas artemidis F0399]
          Length = 373

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 96/376 (25%), Positives = 165/376 (43%), Gaps = 17/376 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  +RNY  L L FD    IF+G N  GKTNI+EA+ + S GR  R  S A++
Sbjct: 1   MRITRLELHSYRNYEILDLRFDPGVQIFLGANAQGKTNIIEALYYASFGRSHRTTSDAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+   +      R++      D+  +L    +R  R   +         EL   L +  
Sbjct: 61  IRMEESA-----GRIDLSFLRHDVPGELSFTFERGHRRRILRAGEPLRQRELVGLLPMVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---S 181
             P    +  G    RRR+LD  +    P +   ++ +  ++R R  +L +         
Sbjct: 116 FSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTHILRQRGAILKDIRERLVPVD 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-------LDG 234
                + Q+A    +I   R+     L + +   VQ       +L+++         L G
Sbjct: 176 ALEPWDVQLARSAARIVTRRIAAAERLGA-LSGRVQAVLAAGEELTISYEIAHVPDDLPG 234

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           + D     L+  Y K L + R  D     T +GPH  DL++     ++  ++GS G+Q+ 
Sbjct: 235 EKDGMADRLEVWYNKALSEFRFRDIARGSTGVGPHLDDLVLSVGGMSLR-SYGSQGQQRT 293

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
             + + LA    + ++ G APILLLD++ + LD D+R AL   +     Q F+T TD + 
Sbjct: 294 GALALKLAELFYLRDSVGEAPILLLDDVMSELDADRRAALLSFIRSEHIQTFITATDAAY 353

Query: 355 FDSLNETAKFMRISNH 370
           F +    A +  +++ 
Sbjct: 354 FPAEEMGATYRYVTHG 369


>gi|282860299|ref|ZP_06269368.1| DNA replication and repair protein RecF [Prevotella bivia
           JCVIHMP010]
 gi|282586896|gb|EFB92132.1| DNA replication and repair protein RecF [Prevotella bivia
           JCVIHMP010]
          Length = 368

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 164/375 (43%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N  +  L    +   F+G NG GKTN+L+AI +LS  +       ++V
Sbjct: 1   MRLDKLSIINYKNIQAATLELSPKLNCFIGHNGEGKTNLLDAIYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F           G A+       R  +  +  + N    + + +    + + +
Sbjct: 61  MCH-TADFLVLEGDYTTEAGDAEQVYCGMKRGSK--KHFKRNKKEYKRLSQHIGLVPLIF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P+   + +G S ERR  +D ++   D  +   +  + + ++ RN LL  E   D +  
Sbjct: 118 ISPADSSLITGGSEERRHLMDVVISQYDALYMESLSRYNKALQQRNSLLKQEEEPDETLL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E QMAE G K+   R   +  L  +     Q  +  H ++SLT    G+        
Sbjct: 178 ELLEGQMAEYGEKVFKKRTAFVEDLQPVFQRIYQAISNEHEQVSLTYVSHGQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + +    +   R  D +   +L G H+ DL++   + +I    GS G+ K  ++ + LA 
Sbjct: 230 RGDLLNVIQRDRAKDRIMGYSLHGIHKDDLVMQLGNYSIKRE-GSQGQNKTYVLALKLAQ 288

Query: 304 ARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSLNE- 360
              +  TT    P+LLLD+I   LD ++   + R+V +D   QIF+T T++   D + + 
Sbjct: 289 FDFLRRTTANNTPLLLLDDIFDKLDANRVEQIIRLVSSDDFGQIFITDTNRDHLDKILQG 348

Query: 361 ---TAKFMRISNHQA 372
                K   + N + 
Sbjct: 349 GAFNYKLFSVENGEV 363


>gi|304319869|ref|YP_003853512.1| recombination protein F [Parvularcula bermudensis HTCC2503]
 gi|303298772|gb|ADM08371.1| recombination protein F [Parvularcula bermudensis HTCC2503]
          Length = 375

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 145/365 (39%), Positives = 205/365 (56%), Gaps = 5/365 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L +S FR+Y S    F+ + T F G NG GKTNILEA+S + PGRG RRA+  D+T
Sbjct: 7   RVTRLALSSFRSYRSAEWRFEKRQTAFYGPNGAGKTNILEALSLMGPGRGLRRAALGDLT 66

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           R GS   +     +   EG   ++++ E    +  R +Q++   +R    L   +R  WL
Sbjct: 67  RQGSDGGWGIGVDLGTGEGRRRLALRAEGVPLK--RHVQVDGEPVRSTGTLLDSVRFQWL 124

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P+ DR+F+    ERRRFLDRMV A  P H R  + FE  +R R   L  G+   +    
Sbjct: 125 TPAQDRLFTDSPGERRRFLDRMVLARCPSHGRDTLTFENALRQRQAALEAGWP-PAILEP 183

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFCALK 244
           +EAQMAE G+ I+ AR + + AL     E VQ+  FP   LSL+G F D     +  A +
Sbjct: 184 LEAQMAEAGIAIDEARRQTLAALQVN-YERVQETAFPRAGLSLSGPFEDIAGIPTLAARR 242

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E YA  L  GR+ D  + RTL+GPHRSDL V +  K       STGEQK +L+G+ LAHA
Sbjct: 243 ESYADLLERGRRRDREAGRTLLGPHRSDLEVVHLGKDQPARLCSTGEQKALLIGLVLAHA 302

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
                 T    +LLLDE++AHLDED+R AL  ++  +   +FMTGTD+++FD+  +    
Sbjct: 303 TASLAATQAPLVLLLDEVAAHLDEDRRAALAAMLDQLAICVFMTGTDRALFDAWGDRVDR 362

Query: 365 MRISN 369
           + +  
Sbjct: 363 LHVDG 367


>gi|329767181|ref|ZP_08258708.1| hypothetical protein HMPREF0428_00405 [Gemella haemolysans M341]
 gi|328836848|gb|EGF86495.1| hypothetical protein HMPREF0428_00405 [Gemella haemolysans M341]
          Length = 378

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 81/381 (21%), Positives = 163/381 (42%), Gaps = 20/381 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK L +  FRNY S+ +       + VG+N  GKTNI+E+I  L+ GR +R  S ++ 
Sbjct: 1   MRIKSLKLLYFRNYLSMNIDVHPSLNVLVGNNANGKTNIIESIFCLALGRSYRTKSDSEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +   +           D ++ +        +  +I  V    + +    L +  
Sbjct: 61  IMFGETATAMSCVV-----NKNDKNLDIMLGISNKGKSAKIAGVKKTKLTDFVGELNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P   ++  G    RR F++R  +     + +  + ++ L++ RN  L +   +     
Sbjct: 116 FSPEDLQLVKGSPSLRREFINREFYQFSRIYHKYYLMYQHLLKQRNSYLKDMRKNPKDEM 175

Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
             ++  ++ +Q+A++ + I   RV  +  +S L  + +   +     L +          
Sbjct: 176 SLAYLETLTSQLAKVAIYITKERVSFVQDISELTYKNMMNISNGQESLKIRYKSSVLESL 235

Query: 239 SFCAL------KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           +   +      +E   K +      D M   T IGPH+ DL     D    + + S G+Q
Sbjct: 236 NIADITDEGFTEENLTKVMMKKFFDDIMRGSTKIGPHQDDLEFYINDLDAKM-YASQGQQ 294

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD- 351
           + +++ + LA    + + TG  P+LLLD++ + LD++++  L   + +   Q F+T    
Sbjct: 295 RSIVLSLKLAEINYLKSKTGTYPVLLLDDVLSELDKNRQLKLLDAINE-NVQTFITTPSI 353

Query: 352 KSVFDSLNETAKFMRISNHQA 372
             + + L + AK  +I N   
Sbjct: 354 SDIKEDLLKKAKVFKIENGNI 374


>gi|78173107|gb|ABB29470.1| RecF [Streptomyces argillaceus]
          Length = 373

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 99/380 (26%), Positives = 167/380 (43%), Gaps = 22/380 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+        R +  +G     ++LE    ++ R        +R  D L   +R   
Sbjct: 61  VRMGAD---RAVVRAQVRQGERQQLVELELNPGKANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR      D+ER++R RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRSDYERVLRQRNTLLKSAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233
              D S     +  +A +G ++  AR++++ A+  L  +  ++       + L       
Sbjct: 177 RTMDLSTLDVWDQHLARVGAELLAARLDLVAAVQPLADKAYEQLAPGGGPVALEYKASAP 236

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           G+   +   L E+    L + RK +     TL GPHR D+++    +     + S GE  
Sbjct: 237 GE-AHAREDLYEQLMGALAEVRKQEIERGVTLAGPHRDDVLLKL-GQLPAKGYASHGESW 294

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDK 352
              + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   D 
Sbjct: 295 SYALALRLASYDLLRAE-GNEPVLILDDVFAELDSRRRERLAELVA-PGEQVLVTAAVDD 352

Query: 353 SVFDSLNETAKFMRISNHQA 372
            V   L        ++    
Sbjct: 353 DVPHVL--AGARYAVAQGTV 370


>gi|307331910|ref|ZP_07611006.1| DNA replication and repair protein RecF [Streptomyces
           violaceusniger Tu 4113]
 gi|306882428|gb|EFN13518.1| DNA replication and repair protein RecF [Streptomyces
           violaceusniger Tu 4113]
          Length = 380

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 168/386 (43%), Gaps = 27/386 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y    +  D   T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYTRAEVALDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A V+G        I+LE    ++ R        +R  D L   LR   
Sbjct: 61  VRMGAERAVVRAAVVQGDRQQL---IELELNPGKANRARINRSSQVRPRDVL-GILRSVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARVPRMAGVRSDYDRVLKQRNTLLKTAALARRHGS 176

Query: 175 -EGYFDSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLT 229
             G  D++       +  +A  G ++   R+++I  L  L  +  ++       + L   
Sbjct: 177 RSGGGDAALSTLDVWDQHLARAGAELLAQRLDLIAVLQPLADKAYEQLAPGGGPVLLEYR 236

Query: 230 GFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           G       +  S   L E     L + RK +     TL+GPHR DL++    +     + 
Sbjct: 237 GSAGEGLTEAGSREELCELLMAALTEARKQEIERGVTLVGPHRDDLVLKL-GRLPAKGYA 295

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE     + + LA   L+    G  P+L+LD++ A LDE +R  L  +V   G Q+ +
Sbjct: 296 SHGESWSYALALRLASYDLLRTEAGE-PVLVLDDVFAELDERRRERLAELVA-PGEQVLV 353

Query: 348 T-GTDKSVFDSLNETAKFMRISNHQA 372
           T   +  V   L+ T     +S  + 
Sbjct: 354 TAAVEDDVPQVLSGT--RYAVSEGEV 377


>gi|304315541|ref|YP_003850686.1| DNA replication and repair protein RecF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777043|gb|ADL67602.1| DNA replication and repair protein RecF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 362

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 94/370 (25%), Positives = 173/370 (46%), Gaps = 17/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L I  F+N    ++ F A   +  G N  GK+N+LE I  LS G+ FR +   D+
Sbjct: 1   MYLKELTIDNFKNLRQQKVTFSAGTNVIYGTNAQGKSNLLECIRILSIGKSFRNSKNKDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDD-RSVRCLQINDVVIRVVDELNKHLRIS 123
               S  ++     ++G+  + +  I +ET       R  ++N+  I+ + EL   +  +
Sbjct: 61  VNFNSDYYY-----IKGIFDIDNEEITVETGYKLNQNRFFKVNNNKIKSISELIGVILTT 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181
              P    I  G    RRR++D  +  I   +   +I + +++  RN++L    F S   
Sbjct: 116 IFSPDDLNIVKGSPFIRRRYMDASISMIKRNYLYDIIQYNKVLANRNKVLKNIKFKSENL 175

Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                ++ Q++  G KI + R + IN L+ ++ + +   +   +++     +  K D   
Sbjct: 176 KLLDIMDEQLSIYGSKIMMYRKQYINNLNLIVKKILHDISDEEVEICYWSNVMDKID-DI 234

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +KE  + KL   R++D     T  GPHR D+ + Y +   +  + S G+Q+ + + + 
Sbjct: 235 KYIKESLSNKLKLNREIDIKYGDTRYGPHRDDIKI-YVNGHDSRIYASQGQQRTIALCLK 293

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   +I +     PILLLD++ + LD ++R  +   VT  G Q F+T T+K        
Sbjct: 294 LAEHEMIKSENHENPILLLDDVMSELDLNRRRYILNKVT--GCQTFITHTEKDDIKG--- 348

Query: 361 TAKFMRISNH 370
             K+  IS+ 
Sbjct: 349 -DKYFLISDG 357


>gi|254511198|ref|ZP_05123265.1| DNA replication and repair protein RecF [Rhodobacteraceae bacterium
           KLH11]
 gi|221534909|gb|EEE37897.1| DNA replication and repair protein RecF [Rhodobacteraceae bacterium
           KLH11]
          Length = 365

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 128/366 (34%), Positives = 197/366 (53%), Gaps = 11/366 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++   RL  D +     G NG GKTNILEA+S  SPGRG RRAS A++
Sbjct: 3   LALTELTVSHFRSHKLARLFLDGRPVALHGPNGAGKTNILEAVSLFSPGRGIRRASAAEM 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           TR      +     +       ++    E    R VR     D       +L +  R+ W
Sbjct: 63  TRRPEALGWKLSGVLRAQGQSFEVETWSEGGAARQVRV----DEKAASQIDLGRLTRVVW 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+PSMDR++   +  RRRFLDR+  + +P H +  + +E+ MR RNRLL E   D+ W +
Sbjct: 119 LIPSMDRLWIEGAEGRRRFLDRIALSFEPSHAQASLTYEKAMRERNRLLKEQVRDAHWYA 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E QMAE+G +I+  R+  +  L     +   +  FP   L L      + + +     
Sbjct: 179 ALEGQMAEMGHRIHSTRLTALEHLR--AAQDQAETAFPSADLEL-----VQTEGAMPETA 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  + L + R  D  + RTL+GPHRSDL   +  K +     STGEQK +LV + L++A
Sbjct: 232 EDLHEALNESRFRDLAAGRTLVGPHRSDLYGVFAAKGVPAKDCSTGEQKALLVSLILSNA 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  PI+LLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L + A+ 
Sbjct: 292 RALAAMVGAPPIVLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFAELGDRAQT 351

Query: 365 MRISNH 370
           + +S+ 
Sbjct: 352 LIVSDG 357


>gi|89069839|ref|ZP_01157174.1| recombination protein F [Oceanicola granulosus HTCC2516]
 gi|89044640|gb|EAR50756.1| recombination protein F [Oceanicola granulosus HTCC2516]
          Length = 366

 Score =  304 bits (779), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 138/372 (37%), Positives = 206/372 (55%), Gaps = 11/372 (2%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ I  L +S FR++    +  DA+     G NG GKTN+LEA+S LSPGRG RRA  A
Sbjct: 2   SRLAITRLTLSHFRSHKRAAVEVDARPVAIYGANGAGKTNLLEAVSILSPGRGLRRAGAA 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++TR      +   A V   +   +I    E     + R ++I+      V  L + +R+
Sbjct: 62  EMTRRPETVGWKVTAEVAAPDRPHEIETWSEAS---AARQVRIDGKAAAQVA-LGRVVRV 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL+PSMDR++   +  RRRFLDR V + D  H    + +E+ MR RNRLL +   D SW
Sbjct: 118 LWLIPSMDRLWIEGADGRRRFLDRAVLSFDADHAAETLAYEKAMRERNRLLKDEVRDPSW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             ++EAQMA  G +I+  RVE++ AL+    +   +  FP   L+L    +G+      A
Sbjct: 178 YGALEAQMARAGARIHAGRVEVLAALAE--AQEGAETAFPVATLALEQS-EGELPGDEAA 234

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L+E +A     GR  D  + RTL GPHR+DL   Y  K +     STGEQK +L+ + LA
Sbjct: 235 LRETFA----AGRGRDMAAGRTLAGPHRTDLAATYAAKDVPARDCSTGEQKALLISLILA 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +AR ++  TG  P+LLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L + A
Sbjct: 291 NARALAARTGMPPLLLLDEVAAHLDAARRAALYEEIVALGAQAWMTGTGPELFAELGDRA 350

Query: 363 KFMRISNHQALC 374
           + + +     + 
Sbjct: 351 QRLEVRETDGVS 362


>gi|312897425|ref|ZP_07756849.1| putative recombination protein F [Megasphaera micronuciformis
           F0359]
 gi|310621486|gb|EFQ05022.1| putative recombination protein F [Megasphaera micronuciformis
           F0359]
          Length = 370

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 95/369 (25%), Positives = 162/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +   RNY    + F A   +  G+NG GKTN+LEA+     G+ +R  +  D+
Sbjct: 1   MNISRIRLLNIRNYEEADISFPATVIVLYGNNGQGKTNLLEALYTGCIGKSYRGVTDVDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  + +       +       +I I     +    + + +ND  +R   EL   L+   
Sbjct: 61  LRKSATNGSVIIDFIRNK-TEQNIKIVFSLHEK---KRVSVNDTKVRT-RELFGILQEVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
             P   ++  G    RRRFLD  +   +P + + ++ + + +  RN LL    ++     
Sbjct: 116 FSPEDLQLIKGNPALRRRFLDMEISQTNPSYYKMLLQYNKAVSQRNILLKRMKYEKDISL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+A L   I   R E +  +S ++ E  +        + LT     K   +    
Sbjct: 176 HEWDLQLARLAAYIVNKRKESLEKISVVVKEIYRNLTSEKEIVKLTYIQPYKGS-TVEDT 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++ Y + L   R+ D   + T IGPHR D +V+  D       GS G+Q+  ++ + +A 
Sbjct: 235 EDVYYELLRKNREKDIYRQSTSIGPHRDDFVVE-NDLGELKKFGSQGQQRTAVLALKMAE 293

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
              I    G  PILLLD++ + LDE++RNAL   V     Q F+T TD S F    E + 
Sbjct: 294 LEFIKKENGEYPILLLDDVMSELDEERRNALLSFVQGK-VQTFITTTDDSFFRKEKEYS- 351

Query: 364 FMRISNHQA 372
           F+ +   + 
Sbjct: 352 FLYVEKGKV 360


>gi|148980122|ref|ZP_01815902.1| recombination protein F [Vibrionales bacterium SWAT-3]
 gi|145961423|gb|EDK26729.1| recombination protein F [Vibrionales bacterium SWAT-3]
          Length = 359

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 153/369 (41%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN  +  +   +     +G NG GKT++LEA+  L  GR F+ +    +
Sbjct: 1   MPLSRLIVKQFRNIEACDIQPSSGFNFLIGPNGSGKTSVLEAVYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F    R    +   ++ I +  + D +   ++I+    + + +L + L +  
Sbjct: 61  IQNECSELF-VHGRFMTSDQF-ELPIGINKQRDGTT-EVKISGQTGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +          +RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATHYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L   I+  R   +N L  +  E       P  ++ +  +     D       
Sbjct: 177 YWDQELARLAESISEWRATYVNQLKEVAEEICA-TFLPEFEIKINYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +    +Q+F++  T   + D  +E ++
Sbjct: 288 QHLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATEAQVFVSSITADQIADMHDENSR 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 MFHVEHGKI 356


>gi|284007065|emb|CBA72340.1| dna replication and repair protein [Arsenophonus nasoniae]
          Length = 362

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 94/369 (25%), Positives = 161/369 (43%), Gaps = 12/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         +G NG GKT+ILEAI  L  GR FR    A V
Sbjct: 1   MMLSRLLIRDFRNIESADLSLATGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQAARV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F      V       ++++ L  +D      ++IN      + EL K L +  
Sbjct: 61  IRHEQDNFILHGRLVPLEPESRELTLGLS-KDRNGDSKVRINGSDGHKIAELAKLLPMQL 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P+      D +RL++ RN  L +    +   S
Sbjct: 120 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPQFFAAWSDLKRLLKQRNAALRQATRYNE-LS 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  KI+  R   I  ++  I E   K+  P   LS++       +       
Sbjct: 179 HWDYELIPLAHKISEWRANYIAGIAKDI-ENTCKQFLPEFSLSISYQRGWDKET------ 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y+  L    + D M   T +GPH++DL +     A+     S G+ K+++  + LA  
Sbjct: 232 -DYSDILVRQFERDRMLTYTALGPHKADLRLRVGGIAVEDIL-SRGQLKLLMCALKLAQG 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
              +  +G   + LLD+ ++ LD+D+R  L   +    +Q+F++  T   V D L+  ++
Sbjct: 290 EYFTRQSGQRCLYLLDDFASELDKDRRQLLAERLKATQAQVFVSAITIAQVKDMLDGNSR 349

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 350 MFCVKHGKI 358


>gi|332288917|ref|YP_004419769.1| recombination protein F [Gallibacterium anatis UMN179]
 gi|330431813|gb|AEC16872.1| recombination protein F [Gallibacterium anatis UMN179]
          Length = 359

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 83/373 (22%), Positives = 162/373 (43%), Gaps = 17/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI  FRN  ++ L  ++     +G NG GKT++LEAI FL  GR F+ +    +
Sbjct: 1   MALSQLNIQHFRNLKAVNLALNSGFNFLIGHNGSGKTSLLEAIYFLGHGRSFKSSVVNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F + FA+VE ++    + ++   + + ++R   IN      + +L   L +  
Sbjct: 61  IQYEQAEF-TLFAKVEELQQSWALGLQKTRQGENTIR---INGKDGHKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F ++P+         RL++ RN  L +   D +   
Sbjct: 117 ITPEGLTLINGGPSYRRAFLDWGLFHLEPQFHHHWSAMNRLLKQRNAAL-QQVDDYALLK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+ +L  +I+  R    + L + I +   +   P +++ +  +     +       
Sbjct: 176 IWDQQLCQLAQQISEWRQRYADELKTEITQTC-RLFLPEVEIEVHFYQGWNKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L +  + D     T+ GP R+D               S G+ K+++  + LA  
Sbjct: 229 -DYADILIENFQRDKSVGYTMSGPQRADFKFRANGMPAEDIL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS--LNETA 362
             +        I L+D+ ++ LD +KR  L + + +  SQ+ +T             E +
Sbjct: 287 EHLMRQQQRHCIFLIDDFASELDPNKRALLAQRLKESQSQVIITAITPEQLQQPYWQEGS 346

Query: 363 KFMRISNHQALCI 375
           K  ++ N + L +
Sbjct: 347 K-FQLQNGELLPL 358


>gi|24753765|gb|AAN64013.1|AF434658_10 recombination protein RecF [Leptospira interrogans]
          Length = 365

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 101/375 (26%), Positives = 170/375 (45%), Gaps = 15/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L I  FRN+  L L FD++   FVGDNG GKTN+LEAI  LS  + FR +  +++
Sbjct: 1   MFLKHLTIQNFRNHEELSLDFDSRLIFFVGDNGEGKTNLLEAICILSWLKSFRESEDSNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS ++F    +++     + + I   ++     R L+ N   I+   +L        
Sbjct: 61  IRWGSENYF-LRGKIKDNLKESVLEIGFTSKPSVK-RKLKFNQEEIKKRTDLIGKFITVL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P   +I  G   ERR+F+D  + + DP +   ++++ ++++ RN LL  G  D S  S
Sbjct: 119 LTPMDLKIIEGGPAERRKFIDAFISSFDPFYLESLLEYNKILKHRNALLKSGNPDISHLS 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ E G+ I   R E++  L+S     + K +     L L    + K        +
Sbjct: 179 IWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSGGKDGLELIYKPNVKD-------Q 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +E+ +KL      D     T +G HR DL +   D+      GS G+++  ++ +  A  
Sbjct: 232 DEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQRDITEFGSQGQKRSTVIALKAATF 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS----LNE 360
               N     P+LL+D++   LD  +R     +V   G Q F T TD          L +
Sbjct: 291 NYYKNILNTIPVLLIDDVIRELDVKRREYFVDLVVTAG-QAFFTTTDLEGIQDYVGKLKD 349

Query: 361 TAKFMRISNHQALCI 375
             +   I   +   I
Sbjct: 350 QKQIFLIRQGKVEPI 364


>gi|47879|emb|CAA44366.1| recF protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
          Length = 355

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 155/368 (42%), Gaps = 15/368 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG N  GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLTRLLIKDFRNIENADLALSPGFNFLVGPNASGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++  E    I +  + + D  VR   I+      + ++   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQSEERETSIGLTKDKQGDSKVR---IDGTDGHKIADVAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +        + +RL++ RN  L +         
Sbjct: 117 ITPEGFTLLTGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALAQ-VSRYEQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E  +A++  + +  Q +  P   L+ +     + +       
Sbjct: 176 PWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D M   T  GPH++D  +  CD A      S G+ K+++  + LA  
Sbjct: 229 -DYADVLERSFERDRMLTYTAHGPHKADFRM-LCDGAPVEDTLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           + ++  +G   + L+D  ++ LD+ +R  L   +    SQ+F++   + V D  +E +K 
Sbjct: 287 QFLTRESGR-CLYLIDAFASELDDGRRGLLASRLKATQSQVFVSELAEHVIDMSDENSKM 345

Query: 365 MRISNHQA 372
             +   + 
Sbjct: 346 FTVEKGKI 353


>gi|304437929|ref|ZP_07397875.1| recombination protein F [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304369069|gb|EFM22748.1| recombination protein F [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 372

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 96/362 (26%), Positives = 159/362 (43%), Gaps = 16/362 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  +R+Y +L L FD    IF+G N  GKTNI+EA+ + + GR  R +S A++
Sbjct: 1   MQITELTLRSYRSYETLHLAFDPGVQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       A +       D+  +L     R  R             +L   L +  
Sbjct: 61  IRAGADG-----AHIGLSFRRHDVPGELSFTFARGARRRITYAGESLRQRDLVGLLPMVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SS 181
             P    +  G    RRR+LD  +    P +   ++ + R+++ RN +L +         
Sbjct: 116 FSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTRILKQRNAVLKDIRERLAAPD 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                +AQ+A     I   R+  +  L + +   VQ       +L+L   + G   + F 
Sbjct: 176 DLPPWDAQLARSAAYIVTRRIAAVAQLGA-LSARVQAVLAAGEELTLAYEIAGAGAEDFA 234

Query: 242 A------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
                  L   Y K L +GR  D     T +GPH  DL++     ++  ++GS G+Q+  
Sbjct: 235 EDDMTESLHLWYNKMLCEGRARDIARAATGVGPHLDDLVLRVGGMSLR-SYGSQGQQRTG 293

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            + + LA    +    G APILLLD++ + LD D+R AL   +     Q F+T TD + F
Sbjct: 294 ALALKLAELFYLQENIGEAPILLLDDVMSELDADRRRALLDFIRHEHIQTFITATDAAYF 353

Query: 356 DS 357
            +
Sbjct: 354 PA 355


>gi|254462172|ref|ZP_05075588.1| DNA replication and repair protein RecF [Rhodobacterales bacterium
           HTCC2083]
 gi|206678761|gb|EDZ43248.1| DNA replication and repair protein RecF [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 368

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 128/370 (34%), Positives = 193/370 (52%), Gaps = 11/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +S FR++   R+          G NG GKTNILEA+S  SPGRG RRAS  D+
Sbjct: 2   LAITELTLSHFRSHKLARISCGPLPVAIYGPNGAGKTNILEAVSLFSPGRGMRRASAEDM 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           TR      +     ++  +   +I +  E   + S R  + N   +   + L +  R+ W
Sbjct: 62  TRRPEALGWKVTGLLQTQDQTHEIEMWSE---NGSARSTKANSKPV-PQNRLAELSRVLW 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+P+MDR++   +  RRRFLDRM  +  P H    + +E+ MR RN+LL E   D  W  
Sbjct: 118 LIPAMDRLWIEGAEGRRRFLDRMALSFFPNHAEASLTYEKTMRERNKLLKENVRDPMWYG 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +E ++AE G  I+  RV  +  LS+   +   K  FP   L LT   D     S     
Sbjct: 178 VLETRLAETGAVIHENRVRTLTFLSN--AQAQAKTPFPTADLELTHAEDAMPVDSV---- 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +        R  D  + RTL+GPHR+DL   +  K +     STGEQK +L+ + LA+A
Sbjct: 232 -DLKDAFEASRFRDLAAGRTLVGPHRADLYGVFTAKGVPAKDCSTGEQKALLISLILANA 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  PILLLDE++AHLD  +R AL+  ++ +G+Q +MTGT   +FDSL+  +  
Sbjct: 291 RALAGQIGAPPILLLDEVAAHLDATRRAALYAEISALGAQAWMTGTGAELFDSLSSQSVH 350

Query: 365 MRISNHQALC 374
           + ++ +  + 
Sbjct: 351 LEVTENDGIS 360


>gi|269797073|ref|YP_003310973.1| DNA replication and repair protein RecF [Veillonella parvula DSM
           2008]
 gi|269093702|gb|ACZ23693.1| DNA replication and repair protein RecF [Veillonella parvula DSM
           2008]
          Length = 366

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 91/369 (24%), Positives = 165/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  +++ F+ +  +  G NG GKTNILE+I   + G+  R    +D+
Sbjct: 1   MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +        + E  +    ++IKL  +     + +++ND  I    EL   L    
Sbjct: 61  LMFNAEEA-GIVVKFEKKDTPQKVNIKLFRQG---AKDIRLNDTKI-SQKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN +L E    ++   
Sbjct: 116 FCPEDLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+A++   I   R+E +  ++ LI    +K       L++        + S    
Sbjct: 176 EEWDLQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMDNGSLEYT 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE + +++      D     T +GPHR DL   + D       GS G+Q+  ++ + L+ 
Sbjct: 236 KEGFYERIKAALPQDRHRLSTSVGPHRDDLRF-FSDAMDLKKFGSQGQQRTAVLSLKLSE 294

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
              I +  G  P+LLLD++ + LDE +R  L + +     Q F+T TD   F  L  + +
Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDESRRVNLLQFI-HKRIQTFITTTDIHDFKDLK-SVQ 352

Query: 364 FMRISNHQA 372
           F+       
Sbjct: 353 FISCEGGNV 361


>gi|167755162|ref|ZP_02427289.1| hypothetical protein CLORAM_00667 [Clostridium ramosum DSM 1402]
 gi|237733415|ref|ZP_04563896.1| recombination protein F [Mollicutes bacterium D7]
 gi|167705212|gb|EDS19791.1| hypothetical protein CLORAM_00667 [Clostridium ramosum DSM 1402]
 gi|229383450|gb|EEO33541.1| recombination protein F [Coprobacillus sp. D7]
          Length = 365

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 162/375 (43%), Gaps = 21/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  FRNY    + FD    I +G NG GKTN++EAI  LS G+ F+      +
Sbjct: 1   MKVNSLCLDNFRNYNHFFIEFDRDINILIGSNGQGKTNLIEAIYLLSVGKSFKTHINKQM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                      FA+V+G     +    LE       +  +I+D  I  + E    L +  
Sbjct: 61  IMFDCE-----FAKVKGEVTSNNKLRSLEMILGSDFKRAKIDDQDIYKISEYVGLLNVVV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
            VP    +  G    RRRF+D  +  I P +   +  +  L++ RN+ L     +     
Sbjct: 116 FVPDDLYLIKGSPNNRRRFIDLELSKISPIYVFNLSKYNNLLKERNKYLKILNQKNRDGD 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSL---IMEYVQKENFPHIKLSLTGFLDGKFD 237
            +   ++ QMA L V++   R++ I  L+     I   + K +   I L  + FL  +  
Sbjct: 176 EYLEVLDEQMARLQVELIKKRIDFIKNLNQKVTSIYNLIAKNDNEKISLRYSCFLKQEL- 234

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                  E          + D    ++ +G H+ DL + + +        S G+Q+ +++
Sbjct: 235 -----TYENILALYKKNHQRDIRYMQSHLGIHKDDLKI-FMNGNAADLFASQGQQRTIVL 288

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + +A   LI +  G  P+LLLD++ + LDE ++N L  I+     Q F+T T     + 
Sbjct: 289 SLKIALIELIKDEIGEYPVLLLDDVLSELDEARKNMLLDILNQK-IQTFITTTSIDGINH 347

Query: 358 -LNETAKFMRISNHQ 371
            + E AK + I   +
Sbjct: 348 QIVEKAKKIYIKGGK 362


>gi|150005151|ref|YP_001299895.1| DNA replication and repair protein RecF [Bacteroides vulgatus ATCC
           8482]
 gi|254883286|ref|ZP_05255996.1| DNA replication and repair protein recF [Bacteroides sp. 4_3_47FAA]
 gi|294778962|ref|ZP_06744378.1| DNA replication and repair protein RecF [Bacteroides vulgatus
           PC510]
 gi|319642660|ref|ZP_07997306.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_40A]
 gi|166220701|sp|A6L3K9|RECF_BACV8 RecName: Full=DNA replication and repair protein recF
 gi|149933575|gb|ABR40273.1| DNA replication and repair protein RecF [Bacteroides vulgatus ATCC
           8482]
 gi|254836079|gb|EET16388.1| DNA replication and repair protein recF [Bacteroides sp. 4_3_47FAA]
 gi|294447271|gb|EFG15855.1| DNA replication and repair protein RecF [Bacteroides vulgatus
           PC510]
 gi|317385748|gb|EFV66681.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_40A]
          Length = 371

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 156/376 (41%), Gaps = 21/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N     L F  +   F+G NG+GKTN+L+A+ +LS  +       +  
Sbjct: 1   MILKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   ++   L+ R  +  +    N      + +    + + 
Sbjct: 61  IRH-EGEFFVIQGFYETDQGEPEEVYCGLKRRQKKQFKR---NKKEYNRLSDHIGFIPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S  RRRF+D ++   D  +   +I + + +  RN LL  E  FD   
Sbjct: 117 MVSPADAELIAGGSDGRRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEFDEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA  G  +   R E I         +    +    K++L             A
Sbjct: 177 MLVWEEMMASAGEVVFKKRSEFIAEFIPTFQSFYSYISQDKEKVNLAY--------ESHA 228

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +       + + R+ D +   +L G H+ DLI+   D  I    GS G+ K  L+ + LA
Sbjct: 229 MSGGLLDIIKESRRRDRVMGYSLKGVHKDDLIMQLGDFPIKRE-GSQGQNKTYLIALKLA 287

Query: 303 HARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360
               +  T G   P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D + +
Sbjct: 288 QFDFLKKTGGNTTPLLLLDDIFDKLDAFRVEQIVKLVAGDRFGQIFITDTNRDHLDKILK 347

Query: 361 T----AKFMRISNHQA 372
                 K   + + + 
Sbjct: 348 KIEREYKVFAVEDGEV 363


>gi|24212703|ref|NP_710184.1| recombination protein RecF [Leptospira interrogans serovar Lai str.
           56601]
 gi|51316470|sp|Q8FA32|RECF_LEPIN RecName: Full=DNA replication and repair protein recF
 gi|24193334|gb|AAN47202.1| recombination protein RecF [Leptospira interrogans serovar Lai str.
           56601]
          Length = 365

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 101/375 (26%), Positives = 170/375 (45%), Gaps = 15/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L I  FRN+  L L FD++   FVGDNG GKTN+LEAI  LS  + FR +  +++
Sbjct: 1   MFLKHLTIQNFRNHEELSLDFDSRLIFFVGDNGEGKTNLLEAICILSWLKSFRESEDSNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS ++F    +++     + + I   ++     R L+ N   I+   +L        
Sbjct: 61  IRWGSENYF-LRGKIKDNLKESVLEIGFTSKPSVK-RKLKFNQEEIKKRTDLIGKFITVL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P   +I  G   ERR+F+D  + + DP +   ++++ ++++ RN LL  G  D S  S
Sbjct: 119 LTPMDLKIIEGGPAERRKFIDAFISSFDPFYLESLLEYNKILKHRNALLKSGNPDISHLS 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ E G+ I   R E++  L+S     + K +     L L    + K        +
Sbjct: 179 IWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSGGKDGLELIYKPNVKD-------Q 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +E+ +KL      D     T +G HR DL +   D+      GS G+++  ++ +  A  
Sbjct: 232 DEFLEKLNHNLSRDLRLGYTSVGIHRDDLFIG-SDQRDITEFGSQGQKRSTVIALKAATF 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS----LNE 360
               N     P+LL+D++   LD  +R     +V   G Q F T TD          L +
Sbjct: 291 NYYKNILNTIPVLLIDDVIRELDVKRREYFVDLVVTAG-QAFFTTTDLEGIQDYVGKLKD 349

Query: 361 TAKFMRISNHQALCI 375
             +   I   +   I
Sbjct: 350 QKQIFLIRQGKVESI 364


>gi|198275605|ref|ZP_03208136.1| hypothetical protein BACPLE_01774 [Bacteroides plebeius DSM 17135]
 gi|198271234|gb|EDY95504.1| hypothetical protein BACPLE_01774 [Bacteroides plebeius DSM 17135]
          Length = 396

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 84/376 (22%), Positives = 158/376 (42%), Gaps = 21/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N     L F  +    +G NG+GKTN+++A+ +LS  +       +  
Sbjct: 24  MWLKRISILNYKNLEQAELAFSRKMNCIIGKNGMGKTNLMDAVYYLSFCKSATNPIDSQN 83

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   ++   L+ R  +  +    N      + +    + + 
Sbjct: 84  IRHEQD-FFVLQGFYETEDGDPEEVYCGLKRRQKKQFKR---NKKEYTRLSDHIGLIPLV 139

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   D   
Sbjct: 140 MVSPADTLLIAGGSEERRRFMDVVISQFDREYLDALIRYNKALVQRNTLLKAELEPDEEL 199

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            +  E  MA  G  +   R + I+    +   Y    +    ++ L+            A
Sbjct: 200 MNVWEEMMASTGEVVFRKRQQFIDEFIPIFQSYYSYISQNQEEVKLSYQSH--------A 251

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            + +    L   R+ D +   +L G H+ DLI+   +  +    GS G+ K  L+ + LA
Sbjct: 252 AEGDLLALLRANRQRDRVMGYSLKGIHKDDLIMQLGEFPMKRE-GSQGQNKTYLIALKLA 310

Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD---- 356
               +  T +G  P++LLD+I   LD  +   + ++V  D   QIF+T T++   D    
Sbjct: 311 QFEFLKRTGSGTTPLILLDDIFDKLDALRVEQIVKLVAGDNFGQIFITDTNRDHLDRILK 370

Query: 357 SLNETAKFMRISNHQA 372
            +    K   + N + 
Sbjct: 371 KIEGDYKLFEVENGEV 386


>gi|302390801|ref|YP_003826621.1| DNA replication and repair protein RecF [Acetohalobium arabaticum
           DSM 5501]
 gi|302202878|gb|ADL11556.1| DNA replication and repair protein RecF [Acetohalobium arabaticum
           DSM 5501]
          Length = 374

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 93/375 (24%), Positives = 174/375 (46%), Gaps = 13/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FRNY +L L  +    IF+GDN  GKTNILEAI  LS G   R    +++
Sbjct: 1   MYLTNLFLKNFRNYHTLELKLNRNLNIFIGDNAEGKTNILEAIYLLSTGDSHRTNITSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 SF+     +  +    +   K+E       + ++IND  ++ +++L  ++    
Sbjct: 61  VNWQQDSFY-----ISSLVNRKEQEFKIEFLFKNRKKEVKINDNKLQKLEDLLGYINAII 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSS 181
             P    +  G   +RR+F++  +  ++  +   + ++ R+++ RN LL    EG     
Sbjct: 116 FSPEDLELVKGSPSKRRKFINLEISQVNSYYYHNLQEYRRIVKQRNNLLKEIREGKSSKD 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQS 239
                  Q+ ELG KI   R+  ++ LS L     +K       ++LS    LD   + S
Sbjct: 176 MLVVWNQQLIELGSKIITKRLNALDKLSILARLMHRKITDGLETLELSYQSSLDLNGNNS 235

Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               ++  + KKL   ++ +     ++ GPHR D+I +  D   T   GS G+Q+   + 
Sbjct: 236 TTEEIETVFTKKLKANQQKEIDRGVSIFGPHRDDIIFEINDIN-TRKFGSQGQQRTAALA 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA    + +  G  PILLLD++ + LD +++  L +++ +   Q F+T T+ +    L
Sbjct: 295 LKLAELEFMKSEIGEYPILLLDDVFSELDNNRQQYLLKVIEN-RIQTFITSTEINRLHKL 353

Query: 359 NETAKFMRISNHQAL 373
            +     ++   + +
Sbjct: 354 EKNKNIYQVKGGKVM 368


>gi|328883700|emb|CCA56939.1| DNA recombination and repair protein RecF [Streptomyces venezuelae
           ATCC 10712]
          Length = 373

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 103/369 (27%), Positives = 162/369 (43%), Gaps = 20/369 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLSSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A  +G        I+LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGAERAVIRAAVTQGERSQL---IELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLSLVKGDPGERRRFLDELITARTPRMAGVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233
              D S     +  +A  G ++   R+E+I  L  L  +  ++       I L       
Sbjct: 177 RGMDLSTLDVWDQHLARAGAELLAQRLELIAVLQPLADKAYEQLAPGGGPILLEYRPSAP 236

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           G    +   L  +    L + RK +     TL+GPHR +L++   D      + S GE  
Sbjct: 237 GAGH-TREELYAQLIDALAEVRKQEIERGVTLVGPHRDELLLKLGDLPAK-GYASHGESW 294

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDK 352
              + + LA   L+ +  G  P+L+LD++ A LD  +R  L  +V   G Q+ +T   D 
Sbjct: 295 SYALALRLASYDLLRSE-GNEPVLVLDDVFAELDARRRERLAELVAG-GEQVLVTAAVDD 352

Query: 353 SVFDSLNET 361
            V   L  T
Sbjct: 353 DVPGVLAGT 361


>gi|313894734|ref|ZP_07828295.1| DNA replication and repair protein RecF [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312976643|gb|EFR42097.1| DNA replication and repair protein RecF [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 373

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 97/376 (25%), Positives = 163/376 (43%), Gaps = 18/376 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  +RNY  L L FD    IF+G N  GKTNI+EA+ + S GR  R  S A++
Sbjct: 1   MRITRLELHSYRNYEILDLRFDPGVQIFLGANAQGKTNIIEALYYASFGRSHRTTSDAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G  +      R++      D+  +L    +R  R   +         EL   L +  
Sbjct: 61  IRMGESA-----GRIDLSFLRHDVPGELSFTFERGHRRRILRAGEPLRQRELVGLLPMVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---S 181
             P    +  G    RRR+LD  +    P +   ++ +  ++R R  +L +         
Sbjct: 116 FSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTHILRQRGAILKDIRERLVPVD 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-------LDG 234
                + Q+A    +I   R+     L + +   VQ       +L+++         L G
Sbjct: 176 ALEPWDVQLARSAARIVTRRIAAAERLGA-LSGRVQAVLAAGEELTISYEIAHVPDDLPG 234

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           + D     L+  Y K L + R  D     T +GPH  DL++     ++  ++GS G+Q+ 
Sbjct: 235 EKDGMADRLEVWYNKALSEFRFRDIARGSTGVGPHLDDLVLSVGGMSLR-SYGSQGQQRT 293

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
             + + LA    + ++ G APILLLD++ + LD D+R AL   +     Q F+T TD + 
Sbjct: 294 GALALKLAELFYLRDSVGEAPILLLDDVMSELDADRRAALLSFIRSEHIQTFITATDAAY 353

Query: 355 FDSLNETAKFMRISNH 370
           F    +      + N 
Sbjct: 354 FPE-EQMGTVRYVRNG 368


>gi|271498581|ref|YP_003331606.1| DNA replication and repair protein RecF [Dickeya dadantii Ech586]
 gi|270342136|gb|ACZ74901.1| DNA replication and repair protein RecF [Dickeya dadantii Ech586]
          Length = 361

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 154/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L         VG NG GKT++LEAI  L  GR FR    A V
Sbjct: 1   MALTRLLIRDFRNIESADLALIPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSIQAARV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     R+EG+E    + +      D +VR   I+      V EL + L I  
Sbjct: 61  IRHEQAEFI-LHGRIEGLERERAVGLSKNRDGDSTVR---IDGSDGHKVAELAQLLPIQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL+R RN  L +         
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFSAWSNLKRLLRQRNAALRQ-VSHYGQLR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L   I+  R E   A+++ I      +  P   LS +       +       
Sbjct: 176 AWDRELVPLAEGISRWRAEYSAAIAADIASTCA-QFLPEFSLSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D     T +GPH++D  +     A+     S G+ K+++  + LA  
Sbjct: 229 -DYADLLERHFERDRQLGYTALGPHKADFRIRAGGVAVEDML-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             ++   G   + L+D+ ++ LD  +R  L   +    +Q+F++  T + + D + E  K
Sbjct: 287 EFLTRQNGLKCLYLIDDFASELDSTRRRLLAERLKATQAQVFVSAITAEQISDMVGENGK 346

Query: 364 FMRISNHQA 372
             R+   + 
Sbjct: 347 MFRVEQGKI 355


>gi|238926600|ref|ZP_04658360.1| possible recombination protein RecF [Selenomonas flueggei ATCC
           43531]
 gi|238885546|gb|EEQ49184.1| possible recombination protein RecF [Selenomonas flueggei ATCC
           43531]
          Length = 377

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 97/363 (26%), Positives = 161/363 (44%), Gaps = 18/363 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  +R+Y +L L FD    IF+G N  GKTNI+EA+ + + GR  R +S A++
Sbjct: 1   MQITELTLRSYRSYETLHLAFDPGVQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R+G+  +  +   R   + G    +     R     R ++     +R  D L   L + 
Sbjct: 61  IRVGADGAHIALSFRRHDVPGALSFTFARGAR-----RRIEYAGESLRQRD-LVGILPMV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---S 180
              P    +  G    RRR+LD  +    P +   ++ + R+++ RN +L +        
Sbjct: 115 LFSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTRILKQRNAVLKDIRERLAAP 174

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL------DG 234
                 +AQ+A+    I   R   +  L + +   VQ       +L+L   +       G
Sbjct: 175 DDLLPWDAQLAKSAAYIVTRRTSAVAQLGA-LSARVQSVLAAGEELTLVYDIAGAAPESG 233

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
             D     L   Y K L +GR  D     T +GPH  DL++      +  + GS G+Q+ 
Sbjct: 234 AKDDMTEQLYLWYNKMLREGRARDIARAATGVGPHLDDLVLRVGGMNLR-SFGSQGQQRT 292

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
             + + LA    +    G APILLLD++ + LD D+R AL   +     Q F+T TD + 
Sbjct: 293 GALALKLAELFYLQENVGEAPILLLDDVMSELDADRRRALLDFIRHENIQTFITATDAAY 352

Query: 355 FDS 357
           F +
Sbjct: 353 FPA 355


>gi|86139415|ref|ZP_01057984.1| recombination protein F [Roseobacter sp. MED193]
 gi|85823918|gb|EAQ44124.1| recombination protein F [Roseobacter sp. MED193]
          Length = 365

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 136/370 (36%), Positives = 196/370 (52%), Gaps = 11/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L  D +     G NG GKTNILEA+S  SPGRG RRAS AD+
Sbjct: 2   LALTELTLSHFRSHLRAELHLDGRPVAIHGKNGAGKTNILEAVSLFSPGRGLRRASAADM 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +   A ++  +   +I    E    R VR     D        L +  R+ W
Sbjct: 62  VRRPEGLGWKLKAVLQAPDQAYEIETWSEEGAARQVRI----DNKASNQIALGQICRVVW 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP MDR++   +  RRRFLDR+  + DP H    + +E+ MR RNRLL E   D++W  
Sbjct: 118 LVPVMDRLWVEAAEGRRRFLDRIALSFDPSHAEATLTYEKAMRERNRLLKEQVRDAAWYR 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +EAQM   G +I+ AR   +  L     +   +  FP   L L    +G+  QS    +
Sbjct: 178 VVEAQMGTAGHRIHTARCSAVQRLIE--AQDKAETAFPTAHLDLVQS-EGEMPQS----E 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +  + L +GR  D    R+L+GPHRSDLI  Y  K I     STGEQK +LV + LA+A
Sbjct: 231 ADLVQALAEGRMRDMKVGRSLVGPHRSDLIGTYVHKGIAAKECSTGEQKALLVSLILANA 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++ + G  PILLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L   A+ 
Sbjct: 291 RALTASEGAPPILLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGAELFAELGTRAQV 350

Query: 365 MRISNHQALC 374
           + + + + + 
Sbjct: 351 LEVGDMEGIS 360


>gi|84514652|ref|ZP_01002016.1| recombination protein F [Loktanella vestfoldensis SKA53]
 gi|84511703|gb|EAQ08156.1| recombination protein F [Loktanella vestfoldensis SKA53]
          Length = 366

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 126/365 (34%), Positives = 189/365 (51%), Gaps = 15/365 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S  R++    L  D +     G NG GKTNILEA+S LSPGRG RRA   D+
Sbjct: 4   LALLQLTLSHLRSHKRAVLDLDPRPLAIFGPNGAGKTNILEAVSLLSPGRGLRRAGADDL 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +     ++ +  + +I    E       R L+I+      V  L +  R+ W
Sbjct: 64  ARRPEALGWKITGVLQSLYQVHEIETWAEAG---QPRQLRIDGKTAPQVA-LGRIARVLW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR+++  +  RRRFLDR   + +P H   ++ +E+ MR RNRLL +   D  W +
Sbjct: 120 LVPAMDRLWTEGADGRRRFLDRATLSFEPGHADVVLTYEKAMRERNRLLKDMVRDPHWYA 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +IE QMA    +I   R +     + +  +      FP  +L+LT             L 
Sbjct: 180 AIEGQMAAAATQITANRTK--AIAALMAAQAAAVSAFPTAQLTLTYS---------DPLP 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +    L D R  D  + RTL+GPHR+DL   + DK +     STGEQK +L+ + LA+A
Sbjct: 229 TDLQSALADHRSRDMAAGRTLLGPHRADLDAVFADKHVPARDCSTGEQKALLISLILANA 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  PILLLDE++AHLD  +R AL+  +  +G+Q FMTGT   +F  L   A++
Sbjct: 289 RALAQDFGAPPILLLDEVAAHLDATRRAALYDEICALGAQAFMTGTGPELFAELGSRAQY 348

Query: 365 MRISN 369
             ++ 
Sbjct: 349 AEVTE 353


>gi|145634167|ref|ZP_01789878.1| recombination protein F [Haemophilus influenzae PittAA]
 gi|145268611|gb|EDK08604.1| recombination protein F [Haemophilus influenzae PittAA]
          Length = 359

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 84/367 (22%), Positives = 157/367 (42%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    I ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGKIQESQHQWSIGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++     + +       
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
             +        I L+D+ ++ LD+DKR  L   +   GSQ+F+T   K     +  E  K
Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQDKRALLAERLQQSGSQVFVTAITKRQLKEMQVENKK 346

Query: 364 FMRISNH 370
              + N 
Sbjct: 347 MFSVHNG 353


>gi|15595201|ref|NP_064723.1| recombination protein F [Pseudomonas aeruginosa PAO1]
 gi|116053723|ref|YP_788158.1| recombination protein F [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254243117|ref|ZP_04936439.1| RecF protein [Pseudomonas aeruginosa 2192]
 gi|296386475|ref|ZP_06875974.1| recombination protein F [Pseudomonas aeruginosa PAb1]
 gi|313111475|ref|ZP_07797276.1| DNA replication and repair protein RecF [Pseudomonas aeruginosa
           39016]
 gi|13959479|sp|Q9I7C3|RECF_PSEAE RecName: Full=DNA replication and repair protein recF
 gi|122262142|sp|Q02V78|RECF_PSEAB RecName: Full=DNA replication and repair protein recF
 gi|9945821|gb|AAG03393.1|AE004440_3 RecF protein [Pseudomonas aeruginosa PAO1]
 gi|115588944|gb|ABJ14959.1| DNA replication and repair protein RecF [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126196495|gb|EAZ60558.1| RecF protein [Pseudomonas aeruginosa 2192]
 gi|310883778|gb|EFQ42372.1| DNA replication and repair protein RecF [Pseudomonas aeruginosa
           39016]
          Length = 369

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 163/372 (43%), Gaps = 17/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  GDNG GKT++LEAI  L   R FR A    V
Sbjct: 1   MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F +V    G+A ++ I  E + +     ++I+    R   +L + L + 
Sbjct: 61  IQY-EEAACTVFGQVMLANGIASNLGISRERQGE---FTIRIDGQNARSAAQLAETLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + +++    +I+  R   I AL  +  E +  E      L+L+ +     D+     
Sbjct: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLA-ELVSLDDLTLSYYRGWDKDR----- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +  + L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 231 --DLLEVLASSLLRDQQMGHTQAGPQRADLRIRLAGHN-AAEILSRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             LI+       + L+D++ + LDE  R AL R++ D+G Q+F+T  D  +       + 
Sbjct: 288 GHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDT 347

Query: 361 TAKFMRISNHQA 372
                 + + + 
Sbjct: 348 PVSMFHVEHGKV 359


>gi|303228584|ref|ZP_07315411.1| putative DNA replication and repair protein RecF [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302516763|gb|EFL58678.1| putative DNA replication and repair protein RecF [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 366

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 94/369 (25%), Positives = 162/369 (43%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  L L    +  +  G NG GKTNILEAI   + G+  R    +D+
Sbjct: 1   MRINSLQLFQFRNYKDLTLDLQPEIIVLYGTNGAGKTNILEAIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +          E  E    ++IKL  +     + +++ND  I    EL   L    
Sbjct: 61  LLFNANEA-GIVVNFEKKETPQKVNIKLFRQGP---KDIRLNDTKI-SQKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN LL E     +   
Sbjct: 116 FCPEDLQLIKGSPSGRRRFLDMEISQTSATYYHQLLQYNRLLQQRNTLLKEYRGKQNIPL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           +  + Q+A++   I   R+E +  ++ LI    +K       L++        +      
Sbjct: 176 AEWDVQLADMAAFIVKKRMESLKKINLLIDLMNRKLTGGLENLTIGYEQPYGEEGHMVYT 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE +   L +    D     T +GPHR DL   + D       GS G+Q+  ++ + L+ 
Sbjct: 236 KEAFYDLLQEALPQDRHRMTTSVGPHRDDLRF-FSDAIDLKKFGSQGQQRTAVLSLKLSE 294

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
              I +  G  P+LLLD++ + LDE +RN L + +     Q  +T TD   F+++ +  +
Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDEARRNNLLQFI-HKRIQTVITTTDIHDFENM-QGVQ 352

Query: 364 FMRISNHQA 372
           F++      
Sbjct: 353 FIQCQEGHI 361


>gi|197286952|ref|YP_002152824.1| recombination protein F [Proteus mirabilis HI4320]
 gi|227354807|ref|ZP_03839224.1| recombination protein F [Proteus mirabilis ATCC 29906]
 gi|132248|sp|P22839|RECF_PROMI RecName: Full=DNA replication and repair protein recF
 gi|226737819|sp|B4F0U7|RECF_PROMH RecName: Full=DNA replication and repair protein recF
 gi|150880|gb|AAA83960.1| putative [Proteus mirabilis]
 gi|194684439|emb|CAR46163.1| dna replication and repair protein [Proteus mirabilis HI4320]
 gi|227165125|gb|EEI49956.1| recombination protein F [Proteus mirabilis ATCC 29906]
          Length = 362

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 153/369 (41%), Gaps = 12/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I  FRN     L         VG NG GKT+ILEAI  L  GR FR A    V
Sbjct: 1   MILSRLLIRHFRNIEQADLPLADGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSAQANRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    +F     R+ G++  +       ++D      ++I+      + EL K L +  
Sbjct: 61  IQHDENAFI-LHGRLSGLDEESRGYSIGLSKDREGNSTVRIDGSDGHKIAELAKLLPMQL 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR F+D   F  +PR      D +R+++ RN  L +         
Sbjct: 120 ITPEGFTLLNGGPKYRRAFIDWGCFHNEPRFFAAWSDLKRVLKQRNAALRQASSYRQLL- 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R E    ++  I E  Q    P   L ++       +       
Sbjct: 179 PWDKELILLTEQISQWRAEYTEDIAKDIEETCQ-LFLPEFTLKVSFQRGWDKET------ 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D +   T +G H++DL +      +     S G+ K+++  + LA  
Sbjct: 232 -DYAQLLERQFERDKVLSYTSLGAHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQG 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
              +   G   + LLD+ ++ LD ++R  L   +    +Q+F++  T   V D L+  ++
Sbjct: 290 EYFTRKNGQRCLYLLDDFASELDANRRQLLAERLKSTQAQVFVSAITSGQVKDMLDVNSR 349

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 350 LFSVEHGKI 358


>gi|45655917|ref|YP_000003.1| DNA repair and genetic recombination protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
 gi|51316280|sp|Q72WD4|RECF_LEPIC RecName: Full=DNA replication and repair protein recF
 gi|45599150|gb|AAS68640.1| DNA repair and genetic recombination protein [Leptospira
           interrogans serovar Copenhageni str. Fiocruz L1-130]
          Length = 365

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 100/375 (26%), Positives = 170/375 (45%), Gaps = 15/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L I  FRN+  L L FD++   FVGDNG GKTN+LEAI  LS  + FR +  +++
Sbjct: 1   MFLKHLTIQNFRNHEELSLDFDSRLIFFVGDNGEGKTNLLEAICILSWLKSFRESEDSNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS ++F    +++     + + I   ++     R L+ N   I+   +L        
Sbjct: 61  IRWGSENYF-LRGKIKNNLKESVLEIGFTSKPSVK-RKLKFNQEEIKKRTDLIGKFITVL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P   +I  G   ERR+F+D  + + DP +   ++++ ++++ RN LL  G  D S  S
Sbjct: 119 LTPMDLKIIEGGPAERRKFIDAFISSFDPFYLEFLLEYNKILKHRNALLKSGNLDISHLS 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ E G+ I   R E++  L+S     + K +     L L    + K        +
Sbjct: 179 IWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSGGKDGLELIYKPNVKD-------Q 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +E+ +KL      D     T +G HR DL +   D+      GS G+++  ++ +  A  
Sbjct: 232 DEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQRDITEFGSQGQKRSTVIALKAATF 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS----LNE 360
               +     P+LL+D++   LD  +R     +V   G Q F T TD          L +
Sbjct: 291 NYYKDILNTIPVLLIDDVIRELDVKRREYFVDLVVTAG-QAFFTTTDLEGIQDYVGKLKD 349

Query: 361 TAKFMRISNHQALCI 375
             +   I   +   I
Sbjct: 350 QKQIFLIRQGKVEPI 364


>gi|84394123|ref|ZP_00992857.1| recombination protein F [Vibrio splendidus 12B01]
 gi|84375269|gb|EAP92182.1| recombination protein F [Vibrio splendidus 12B01]
          Length = 359

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 149/369 (40%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN  +  +   +     +G NG GKT++LEA+  L  GR F+ +    +
Sbjct: 1   MPLSRLIVKQFRNIEACDIQPSSGFNFLIGANGSGKTSVLEAVYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F     +   +    I I  +      V+   I+    + + +L + L +  
Sbjct: 61  IQNECSELFVHGRFLTSDQFELPIGINKQRDGTTEVK---ISGQTGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +          +RL + RN LL     +    S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTAT-NYRELS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L   I+  R   +  L  +  E       P  ++ +  +     D       
Sbjct: 177 YWDQELARLAESISQWRATYVEQLKEVAEEICA-TFLPEFEIKINYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +    +Q+F++  T   + D  +E ++
Sbjct: 288 QHLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATQAQVFVSSITADQIADMHDENSR 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 MFHVEHGKI 356


>gi|167036435|ref|YP_001664013.1| recombination protein F [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320114861|ref|YP_004185020.1| DNA replication and repair protein RecF [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|226737846|sp|B0KAG3|RECF_THEP3 RecName: Full=DNA replication and repair protein recF
 gi|166855269|gb|ABY93677.1| DNA replication and repair protein RecF [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319927952|gb|ADV78637.1| DNA replication and repair protein RecF [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 362

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 157/372 (42%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRN    ++ F     IF G N  GK+N+LE+I  LS GR FR +   ++
Sbjct: 1   MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTEL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G   F        E  +   +   K         + +++N   I+   EL   L   
Sbjct: 61  IKFGEDYFYVKAIICQENNDKKIEFGYK-----KNENKVIKVNGNKIKSTSELLGQLLTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSS 181
              P    I       RR++LD  +  ++  +   ++ + +++  RN+LL   +     S
Sbjct: 116 IFSPEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMNRNKLLKSIKEGKSKS 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + Q+ E G KI + R   +  +   I +++ + +    ++     +  K      
Sbjct: 176 ILEIFDDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEE 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +K+   +KL     +D     T +GPHR D  +   +   +  + S G+Q+   + + L
Sbjct: 236 IVKKRLKEKLSKNIDVDLRYFTTQVGPHREDFKI-IINGYDSRVYSSQGQQRTAALCLKL 294

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           +   ++   T   P+LLLD++ + LDE+++  +   +   G Q F+T T K         
Sbjct: 295 SEFEILKKETSEKPVLLLDDVMSELDENRKKYVLERLK--GFQTFITHTTKRYLKG---- 348

Query: 362 AKFMRISNHQAL 373
             + +ISN   +
Sbjct: 349 DCYFKISNGVVI 360


>gi|303230615|ref|ZP_07317365.1| putative DNA replication and repair protein RecF [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514670|gb|EFL56662.1| putative DNA replication and repair protein RecF [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 366

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 95/369 (25%), Positives = 163/369 (44%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L + +FRNY  L L    +  +  G NG GKTNILEAI   + G+  R    +D+
Sbjct: 1   MRINSLQLFQFRNYKDLTLDLQPEIIVLYGTNGAGKTNILEAIYVGTIGKSHRTNDTSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +          E  E L  ++IKL  +     + +++ND  I    EL   L    
Sbjct: 61  LLFNANEA-GIVVNFEKKETLQKVNIKLFRQGP---KDIRLNDTKI-SQKELIGTLNTVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
             P   ++  G    RRRFLD  +      +  +++ + RL++ RN LL E     +   
Sbjct: 116 FCPEDLQLIKGSPSGRRRFLDMEISQTSATYYHQLLQYNRLLQQRNTLLKEYRGKQNIPL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           +  + Q+A++   I   R+E +  ++ LI    +K       L++        +      
Sbjct: 176 AEWDVQLADMAAFIVKKRMESLKKINLLIDLMNRKLTGGLENLTIGYEQPYGEEGHMVYT 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KE +   L +    D     T +GPHR DL   + D       GS G+Q+  ++ + L+ 
Sbjct: 236 KEAFYDLLQEALPQDRHRMTTSVGPHRDDLRF-FSDAIDLKKFGSQGQQRTAVLSLKLSE 294

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
              I +  G  P+LLLD++ + LDE +RN L + +     Q  +T TD   F+++ +  +
Sbjct: 295 LEFIKSEVGEYPVLLLDDVLSELDEARRNNLLQFI-HKRIQTVITTTDIHDFENM-QGVQ 352

Query: 364 FMRISNHQA 372
           F++      
Sbjct: 353 FIQCQEGHI 361


>gi|302543961|ref|ZP_07296303.1| RecF protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302461579|gb|EFL24672.1| RecF protein [Streptomyces himastatinicus ATCC 53653]
          Length = 383

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 96/388 (24%), Positives = 163/388 (42%), Gaps = 28/388 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   +      T FVG NG GKTN++EA+ +L+     R +S A +
Sbjct: 1   MHVTHLSLADFRSYARAEVALGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A V+G        ++LE    ++ R        +R  D L   LR   
Sbjct: 61  VRMGAERAVVRAAVVQGDRQQL---VELELNPGKANRARINRSSQVRPRDAL-GILRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDDLITARAPRMAGIRSDYDRVLKQRNSLLKTAAMARRHGS 176

Query: 181 ------------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKL 226
                       +     +  +A  G ++   R ++I+ L  L  +  ++       + L
Sbjct: 177 RSGSGGSGDAALATLDVWDQHLARTGAELLAQRFDLISVLQPLADKAYEQLAPGGGPVLL 236

Query: 227 SLTGFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
              G          S   L E     L D RK +     TL+GPHR DL++    +    
Sbjct: 237 EYRGSAGEDLAAAGSREELYERLMAALADARKQEIERGVTLVGPHRDDLVLKL-GRLPAK 295

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
            + S GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +V   G Q
Sbjct: 296 GYASHGESWSYALALRLASYDLLRAE-GAEPVLVLDDVFAELDSRRRERLAELVA-PGEQ 353

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQA 372
           + +T   +     + E  ++  ++  + 
Sbjct: 354 VLVTAAVEEDVPEVLEGVRY-AVAEGEV 380


>gi|29840206|ref|NP_829312.1| recombination protein F [Chlamydophila caviae GPIC]
 gi|33301500|sp|Q823G6|RECF_CHLCV RecName: Full=DNA replication and repair protein recF
 gi|29834554|gb|AAP05190.1| recF protein [Chlamydophila caviae GPIC]
          Length = 367

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 96/368 (26%), Positives = 158/368 (42%), Gaps = 10/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L +  FRNY    +          G+N  GKTN+LEA+  LS GR FR     + 
Sbjct: 1   MKILSLRLKNFRNYKEAEVSLSPDMNYIFGENAQGKTNLLEALYVLSLGRSFRTTHLTEA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              GS  FF     +E           L T  D+  + +  +   I+ + +L   + I  
Sbjct: 61  IFFGSSHFF-----LEMTFEKDGFCHTLSTYVDKQGKKILCDHSPIKTLSQLIGMVPIVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  + SG   +RR FL+ ++   DP+++  +  + R +  RN LL      +S  S
Sbjct: 116 FSSKDRSLISGAPADRRLFLNLLLSQCDPQYKHTLSYYHRALLQRNTLLKTKQ--TSTLS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+A LG  + ++R      L+ L+ E         +++     L  + + S  A+ 
Sbjct: 174 VWDEQLATLGAYLTVSRYFCCEQLNQLVQELWSNSLSEQLRIKFKSSLIKQGNLSQEAII 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           EE  K+L      D     T +GPHR D  +   D ++     S G++  +L  + LA  
Sbjct: 234 EELRKQLTTALHRDLELGTTSVGPHREDFTLMINDLSV-AQFSSEGQKHSLLAILRLAEC 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             I N     P+  +D+I A LD  + + L  +   +G Q  MT T+     SL+ET+K 
Sbjct: 293 LYIKNIYNACPLFCMDDIHAGLDNHRISQLLDLAPTLG-QTLMTSTNIPH-QSLSETSKI 350

Query: 365 MRISNHQA 372
             ++  Q 
Sbjct: 351 FSVNQAQI 358


>gi|107098997|ref|ZP_01362915.1| hypothetical protein PaerPA_01000003 [Pseudomonas aeruginosa PACS2]
 gi|218888749|ref|YP_002437613.1| recombination protein F [Pseudomonas aeruginosa LESB58]
 gi|254237754|ref|ZP_04931077.1| RecF protein [Pseudomonas aeruginosa C3719]
 gi|226737820|sp|B7V0N8|RECF_PSEA8 RecName: Full=DNA replication and repair protein recF
 gi|126169685|gb|EAZ55196.1| RecF protein [Pseudomonas aeruginosa C3719]
 gi|218768972|emb|CAW24730.1| RecF protein [Pseudomonas aeruginosa LESB58]
          Length = 369

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 163/372 (43%), Gaps = 17/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  GDNG GKT++LEAI  L   R FR A    V
Sbjct: 1   MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F +V    G+A ++ I  E + +     ++I+    R   +L + L + 
Sbjct: 61  IQY-EEAACTVFGQVMLANGIASNLGISRERQGE---FTIRIDGQNARSAAQLAETLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + +++    +I+  R   I AL  +  E +  E      L+L+ +     D+     
Sbjct: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLA-ELVSLDDLTLSYYRGWDKDR----- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +  + L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 231 --DLLEVLASSLLRDQQMGHTQAGPQRADLRIRLSGHN-AAEILSRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             LI+       + L+D++ + LDE  R AL R++ D+G Q+F+T  D  +       + 
Sbjct: 288 GHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDT 347

Query: 361 TAKFMRISNHQA 372
                 + + + 
Sbjct: 348 PVSMFHVEHGKV 359


>gi|218708100|ref|YP_002415721.1| recombination protein F [Vibrio splendidus LGP32]
 gi|254790499|sp|B7VGI6|RECF_VIBSL RecName: Full=DNA replication and repair protein recF
 gi|218321119|emb|CAV17069.1| DNA replication and repair protein recF [Vibrio splendidus LGP32]
          Length = 359

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 152/369 (41%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN  +  +   +     +G NG GKT++LEA+  L  GR F+ +    +
Sbjct: 1   MPLSRLIVKQFRNIEACDIQPSSGFNFLIGANGSGKTSVLEAVYLLGHGRSFKSSLSGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F    R    +   ++ I +  + D +   ++I+    + + +L + L +  
Sbjct: 61  IQNECSELF-VHGRFMTSDQF-ELPIGINKQRDGTT-EVKISGQTGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +          +RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATHYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L   I+  R   +  L  +  E       P  ++ +  +     D       
Sbjct: 177 YWDQELARLAESISQWRATYVEQLKEVAEEICA-TFLPEFEIKINYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +    +Q+F++  T   + D  +E ++
Sbjct: 288 QHLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATQAQVFVSSITADQIADMHDENSR 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 MFHVEHGKI 356


>gi|49086132|gb|AAT51330.1| PA0003 [synthetic construct]
          Length = 370

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 163/372 (43%), Gaps = 17/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  GDNG GKT++LEAI  L   R FR A    V
Sbjct: 1   MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F +V    G+A ++ I  E + +     ++I+    R   +L + L + 
Sbjct: 61  VQY-EEAACTVFGQVMLANGIASNLGISRERQGE---FTIRIDGQNARSAAQLAETLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + +++    +I+  R   I AL  +  E +  E      L+L+ +     D+     
Sbjct: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLA-ELVSLDDLTLSYYRGWDKDR----- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +  + L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 231 --DLLEVLASSLLRDQQMGHTQAGPQRADLRIRLAGHN-AAEILSRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             LI+       + L+D++ + LDE  R AL R++ D+G Q+F+T  D  +       + 
Sbjct: 288 GHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDT 347

Query: 361 TAKFMRISNHQA 372
                 + + + 
Sbjct: 348 PVSMFHVEHGKV 359


>gi|145628067|ref|ZP_01783868.1| recombination protein F [Haemophilus influenzae 22.1-21]
 gi|144979842|gb|EDJ89501.1| recombination protein F [Haemophilus influenzae 22.1-21]
          Length = 359

 Score =  301 bits (772), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 157/367 (42%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLNFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I E   +   P ++++++     + +       
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALCPEI-EQTCRLFLPELEINVSFHQGWEKNT------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -DYAEVLEQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
             +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T   K     +  E  K
Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITKRQLKEMQVENKK 346

Query: 364 FMRISNH 370
              + N 
Sbjct: 347 MFSVHNG 353


>gi|167038679|ref|YP_001661664.1| recombination protein F [Thermoanaerobacter sp. X514]
 gi|256751452|ref|ZP_05492330.1| DNA replication and repair protein RecF [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300913761|ref|ZP_07131078.1| DNA replication and repair protein RecF [Thermoanaerobacter sp.
           X561]
 gi|307723222|ref|YP_003902973.1| DNA replication and repair protein RecF [Thermoanaerobacter sp.
           X513]
 gi|226737847|sp|B0K0X1|RECF_THEPX RecName: Full=DNA replication and repair protein recF
 gi|166852919|gb|ABY91328.1| DNA replication and repair protein RecF [Thermoanaerobacter sp.
           X514]
 gi|256749671|gb|EEU62697.1| DNA replication and repair protein RecF [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300890446|gb|EFK85591.1| DNA replication and repair protein RecF [Thermoanaerobacter sp.
           X561]
 gi|307580283|gb|ADN53682.1| DNA replication and repair protein RecF [Thermoanaerobacter sp.
           X513]
          Length = 362

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 158/372 (42%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRN    ++ F     IF G N  GK+N+LE+I  LS GR FR +   ++
Sbjct: 1   MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTEL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G   F        E  +   +   K         + +++N   I+   EL   L   
Sbjct: 61  IKFGEDYFYVKAIICQENNDKKIEFGYK-----KNENKVIKVNGNKIKSTSELLGQLLTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSS 181
              P    I       RR++LD  +  ++  +   ++ + +++  RN+LL   +     S
Sbjct: 116 IFSPEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMNRNKLLKSIKEGKSKS 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + Q+ E G KI + R   +  +   I +++ + +    ++     +  K      
Sbjct: 176 ILEIFDDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEE 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +K+   +KL     +D     T +GPHR D  +   +   +  + S G+Q+   + + L
Sbjct: 236 IVKKRLKEKLSKNIDVDLRYFTTQVGPHREDFKI-IINGYDSRVYSSQGQQRTAALCLKL 294

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           +   ++   T   P+LLLD++ + LDE+++  +   +   G Q F+T T K     L   
Sbjct: 295 SEFEILKKETSEKPVLLLDDVMSELDENRKKYVLERLK--GFQTFITHTTKR---DLKGD 349

Query: 362 AKFMRISNHQAL 373
             + +ISN   +
Sbjct: 350 C-YFKISNGVVI 360


>gi|16272929|ref|NP_439154.1| recombination protein F [Haemophilus influenzae Rd KW20]
 gi|260580082|ref|ZP_05847912.1| recombination protein F [Haemophilus influenzae RdAW]
 gi|1172892|sp|P43767|RECF_HAEIN RecName: Full=DNA replication and repair protein recF
 gi|1574021|gb|AAC22653.1| DNA/ATP binding protein (recF) [Haemophilus influenzae Rd KW20]
 gi|260093366|gb|EEW77299.1| recombination protein F [Haemophilus influenzae RdAW]
          Length = 359

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 84/367 (22%), Positives = 159/367 (43%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    I ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGQIQESQHQWSIGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   ALS  I +  Q    P ++++++     + +       
Sbjct: 176 IWDVELAKLAHQVSEWRAEYAEALSPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  K
Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKK 346

Query: 364 FMRISNH 370
              + N 
Sbjct: 347 MFSVHNG 353


>gi|86147177|ref|ZP_01065493.1| recombination protein F [Vibrio sp. MED222]
 gi|85835061|gb|EAQ53203.1| recombination protein F [Vibrio sp. MED222]
          Length = 359

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 73/369 (19%), Positives = 153/369 (41%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN  +  ++  +     +G NG GKT++LEA+  L  GR F+ +    +
Sbjct: 1   MPLSRLIVKQFRNIEACDILPSSGFNFLIGANGSGKTSVLEAVYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +      F    R    +   ++ I +  + D +   ++I+    + + +L + L +  
Sbjct: 61  IQNECSELF-VHGRFMTSDQF-ELPIGINKQRDGTT-EVKISGQTGQKLAQLAQVLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  VF  +          +RL + RN LL          S
Sbjct: 118 IHPEGFDLLTDGPKHRRAFIDWGVFHSESGFYDAWGRVKRLNKQRNALLKTATHYRE-LS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A L   I+  R   +  L  +  E       P  ++ +  +     D       
Sbjct: 177 YWDQELARLAESISQWRATYVEQLKEVAEEICA-TFLPEFEIKINYYRGWDKDTP----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T  GP+++DL +      +     S G+ K+++  + +A  
Sbjct: 231 --YAEILEKNFERDQQLGYTFSGPNKADLKIKVNGTPVEDVL-SRGQLKLMVCALRVAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           + ++  TG   I L+D+ ++ LD  +R  L   +    +Q+F++  T   + D  +E ++
Sbjct: 288 QHLTQMTGKQCIYLIDDFASELDSQRRARLAECLKATQAQVFVSSITADQIADMHDENSR 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 MFHVEHGKI 356


>gi|145638187|ref|ZP_01793797.1| recombination protein F [Haemophilus influenzae PittII]
 gi|145272516|gb|EDK12423.1| recombination protein F [Haemophilus influenzae PittII]
 gi|309751343|gb|ADO81327.1| DNA replication and repair protein RecF [Haemophilus influenzae
           R2866]
          Length = 359

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 157/367 (42%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLHFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++     + +       
Sbjct: 176 VWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
             +        I L+D+ ++ LD+DKR  L   +   GSQ+F+T   K     +  E  K
Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQDKRALLAERLQQSGSQVFVTAITKRQLKEMQVENKK 346

Query: 364 FMRISNH 370
              + N 
Sbjct: 347 MFSVHNG 353


>gi|307565627|ref|ZP_07628105.1| DNA replication and repair protein RecF [Prevotella amnii CRIS
           21A-A]
 gi|307345659|gb|EFN91018.1| DNA replication and repair protein RecF [Prevotella amnii CRIS
           21A-A]
          Length = 368

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 162/376 (43%), Gaps = 19/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N  +  L    +   F+G NG GKTN+L+AI +LS  +       ++V
Sbjct: 1   MRLDKLSIINYKNIQTATLELSPKLNCFIGHNGEGKTNLLDAIYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+ +FF          G  +       R  +  +  + N    + + +    + + +
Sbjct: 61  IQHGT-NFFVIEGNYTNEHGDKEQVYCGMKRGQK--KHFKRNKKEYKRLSQHIGLVPLVF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
           + P+   +  G S ERR+ +D ++   D  +   +  + + ++ RN LL +    D +  
Sbjct: 118 ISPADSSLIEGGSEERRKLMDVVISQYDAAYIEALTRYNKALQQRNSLLKQEEGLDETLL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E QMAE G  +   R   +  L  +     +  +  H K+SLT    G+        
Sbjct: 178 ELLEMQMAEYGEYVFKKRTVFVEELQPIFQNIYKCISNDHEKVSLTYMSHGQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +      + + R  D +   +L G H+ DL++   D  I   +GS G+ K  ++ + LA 
Sbjct: 230 RGNLLDIIRNSRDKDKIMGYSLHGVHKDDLVMLLGDYPIK-RYGSQGQNKTYVLSLKLAQ 288

Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE- 360
              +        P+LLLD+I   LD ++   +  +V+ D   QIF+T T++   D +   
Sbjct: 289 FDFLCRTALHNTPLLLLDDIFDKLDSNRVKQIINLVSGDDFGQIFITDTNREHLDKILHG 348

Query: 361 ---TAKFMRISNHQAL 373
                K   + +   +
Sbjct: 349 GDFKYKLFSVESGDVI 364


>gi|145637297|ref|ZP_01792958.1| recombination protein F [Haemophilus influenzae PittHH]
 gi|145269549|gb|EDK09491.1| recombination protein F [Haemophilus influenzae PittHH]
          Length = 359

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 156/367 (42%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++     + +       
Sbjct: 176 VWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
             +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T   K     +  E  K
Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITKRQLKEMQVENKK 346

Query: 364 FMRISNH 370
              + N 
Sbjct: 347 MFSVHNG 353


>gi|302346673|ref|YP_003814971.1| DNA replication and repair protein RecF [Prevotella melaninogenica
           ATCC 25845]
 gi|302150770|gb|ADK97031.1| DNA replication and repair protein RecF [Prevotella melaninogenica
           ATCC 25845]
          Length = 368

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 160/375 (42%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L+I  ++N  +  L   A+   F+G NG GKTN+L+A+ +LS  +       ++V
Sbjct: 1   MQLEKLSIINYKNIQAATLNLSAKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +  +F          G  +       R  +  +  + N    + + +    + + +
Sbjct: 61  MRHDAD-YFVLEGDYCTDTGEHEQVYCGMKRGSK--KHFKRNKKEYKRLSQHIGLVPLIF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P+   +  G S ERR+ +D ++   D  +   +  + + ++ RN LL  E   D++  
Sbjct: 118 VSPADATLIEGGSEERRKLMDVVISQYDTPYIESLSRYNKALQQRNSLLKQEEEPDATLL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E QMAE G  +   R   +  L+ +     Q       ++SL      +        
Sbjct: 178 ELLEMQMAEHGEAVYKKRAAFVEELTPVFQRIYQTICSEREQVSLEYVSHCQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + +    +   R  D +   +L G H+ DL++      +    GS G+ K  ++ + LA 
Sbjct: 230 RGDLLDVIQRDRAKDRIMGYSLHGTHKDDLVMKLGGYPMKRE-GSQGQNKTYVLALKLAQ 288

Query: 304 ARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE- 360
              +  T G   P+LLLD+I   LD  +   + R+V+ D   QIF+T T++   D + + 
Sbjct: 289 FDFLRRTAGNNTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFGQIFITDTNRDHLDKILQG 348

Query: 361 ---TAKFMRISNHQA 372
                K   +   + 
Sbjct: 349 SGFNYKLFSVEGGEI 363


>gi|323141434|ref|ZP_08076324.1| putative DNA replication and repair protein RecF
           [Phascolarctobacterium sp. YIT 12067]
 gi|322414090|gb|EFY04919.1| putative DNA replication and repair protein RecF
           [Phascolarctobacterium sp. YIT 12067]
          Length = 375

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 92/377 (24%), Positives = 164/377 (43%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L    FRNY S  L   +   +F G N  GKTN+LEAI + + G   R ++  ++
Sbjct: 1   MKINSLYAVNFRNYESCSLQLSSMINVFYGQNAQGKTNLLEAIFYSAFGMSHRTSAEEEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            ++G+ +  +       + G  ++ IK   + +R  + + ++   +R   E    L    
Sbjct: 61  LKMGADA-MAVGVEYASVSGSHEVKIKKYRQHERWQKEILLDGARVR-PKEHYGALNTVM 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SS 181
             P   ++  G    RRRF D  +   DP +   ++ + R+++ RNRLL E   +     
Sbjct: 119 FSPEDLQLVKGEPALRRRFFDMQIAQTDPVYYDLLLKYNRVLQQRNRLLKELRDNGGTPD 178

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-----F 236
                  +   L   I   R+  +  L ++  E           L +            +
Sbjct: 179 ILQPWNEEFIRLAAAIVRRRLAALGKLQAIAGEIYSSITKGSEMLQVRYEQKANNSTLLY 238

Query: 237 DQSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            QS  A  E+ Y ++L + +++D +   T IGPHR DL +     ++    GS G+Q+  
Sbjct: 239 PQSAEAAAEDFYREQLSERQRLDILRGNTGIGPHRDDLQLLLNGLSLRA-FGSQGQQRSG 297

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            + + L+  + + N  G  P+LLLD++ + LD  +R  L   + D   Q F+T  D+ + 
Sbjct: 298 ALALKLSQLQYVKNELGEFPVLLLDDVMSELDNSRRAQLLLFI-DGRVQTFITVNDRELI 356

Query: 356 DSLNETAKFMRISNHQA 372
             L   A + +IS    
Sbjct: 357 PELAGNA-YFKISGGSI 372


>gi|152985186|ref|YP_001345399.1| recombination protein F [Pseudomonas aeruginosa PA7]
 gi|166220723|sp|A6UX64|RECF_PSEA7 RecName: Full=DNA replication and repair protein recF
 gi|150960344|gb|ABR82369.1| RecF protein [Pseudomonas aeruginosa PA7]
          Length = 369

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 162/372 (43%), Gaps = 17/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  GDNG GKT++LEAI  L   R FR A    V
Sbjct: 1   MSLTRVSVTAVRNLHPVTLSPSPRINILYGDNGSGKTSVLEAIHLLGLARSFRSARLQPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F +V    G+A ++ I  E + +     ++I+    R   +L + L + 
Sbjct: 61  IQY-EEAACTVFGQVMLANGIASNLGISRERQGE---FTIRIDGQNARSAAQLAETLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPVWQRLQKALRQRNSWLRHGKLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + +++    +I+  R   I AL  +  E +  E      L+L+ +     D+     
Sbjct: 177 AAWDRELSLASDEIDAYRRSYIQALKPVFEETLA-ELVSLDDLTLSYYRGWDKDR----- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +    L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 231 --DLQDVLASSLLRDQQMGHTQAGPQRADLRIRLAGHN-AAEILSRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             LI+       + L+D++ + LDE  R AL R++ D+G Q+F+T  D  +       + 
Sbjct: 288 GHLINRAKRGQCVYLVDDLPSELDEQHRMALCRLLEDLGCQVFITCVDPQLLKDGWRTDT 347

Query: 361 TAKFMRISNHQA 372
                 + + + 
Sbjct: 348 PVAMFHVEHGKV 359


>gi|255023617|ref|ZP_05295603.1| recombination protein F [Listeria monocytogenes FSL J1-208]
          Length = 317

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 141/323 (43%), Gaps = 11/323 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       S+ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P    +  G    RRRFL+  +  + P +   + +++R+++ RN+ L     +   D 
Sbjct: 116 FAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQRNQYLKMLQMKRKVDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
                +  Q A++ + +   R + I  L +       + +     L +        +  +
Sbjct: 176 ILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLETLKIEYKASVTLNGDN 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K +  +K+   ++ +     TLIGPHR D +     + +    GS G+Q+   + I
Sbjct: 236 PDVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV-QDFGSQGQQRTTALSI 294

Query: 300 FLAHARLISNTTGFAPILLLDEI 322
            LA   LI   TG  P+LLLD++
Sbjct: 295 KLAEIDLIHEETGEYPVLLLDDV 317


>gi|260581930|ref|ZP_05849726.1| recombinational DNA repair ATPase [Haemophilus influenzae NT127]
 gi|260095123|gb|EEW79015.1| recombinational DNA repair ATPase [Haemophilus influenzae NT127]
          Length = 359

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 157/367 (42%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLNFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++     + +       
Sbjct: 176 IWDVELAKLAHQVSEWRAEYAEALCPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
             +        I L+D+ ++ LD+DKR  L   +   GSQ+F+T   K     +  E  K
Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQDKRALLAERLQQSGSQVFVTAITKRQLKEMQVENKK 346

Query: 364 FMRISNH 370
              + N 
Sbjct: 347 MFSVHNG 353


>gi|319775075|ref|YP_004137563.1| DNA replication and repair protein RecF [Haemophilus influenzae
           F3047]
 gi|329123014|ref|ZP_08251585.1| recombination protein F [Haemophilus aegyptius ATCC 11116]
 gi|317449666|emb|CBY85872.1| DNA replication and repair protein RecF [Haemophilus influenzae
           F3047]
 gi|327471945|gb|EGF17385.1| recombination protein F [Haemophilus aegyptius ATCC 11116]
          Length = 359

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 159/367 (43%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   ALS  I +  Q    P ++++++     + +       
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALSPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYYEILQQNFERDRALNYTFAGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  K
Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKK 346

Query: 364 FMRISNH 370
              + N 
Sbjct: 347 MFSVHNG 353


>gi|288802280|ref|ZP_06407720.1| RecF protein [Prevotella melaninogenica D18]
 gi|288335247|gb|EFC73682.1| RecF protein [Prevotella melaninogenica D18]
          Length = 368

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 160/375 (42%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L+I  ++N  +  L   A+   F+G NG GKTN+L+A+ +LS  +       ++V
Sbjct: 1   MQLEKLSIINYKNIQAATLNLSAKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +  +F          G  +       R  +  +  + N    + + +    + + +
Sbjct: 61  MRHDAD-YFVLEGDYCTDAGEHEQVYCGMKRGSK--KHFKRNKKEYKRLSQHIGLVPLIF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P+   +  G S ERR+ +D ++   D  +   +  + + ++ RN LL  E   D++  
Sbjct: 118 VSPADATLIEGGSEERRKLMDVVISQYDTPYIESLSRYNKALQQRNSLLKQEEEPDATLL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E QMAE G  +   R   +  L+ +     Q       ++SL      +        
Sbjct: 178 ELLEMQMAEHGEAVYKKRAAFVEELTPVFQRIYQTICSEREQVSLEYVSHCQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + +    +   R  D +   +L G H+ DL++      +    GS G+ K  ++ + LA 
Sbjct: 230 RGDLLDVIQRDRAKDRIMGYSLHGTHKDDLVMKLGGYPMKRE-GSQGQNKTYVLALKLAQ 288

Query: 304 ARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE- 360
              +  T G   P+LLLD+I   LD  +   + R+V+ D   QIF+T T++   D + + 
Sbjct: 289 FDFLRRTAGNNTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFGQIFITDTNRDHLDKILQG 348

Query: 361 ---TAKFMRISNHQA 372
                K   +   + 
Sbjct: 349 SGFNYKLFSVEGGEI 363


>gi|114798067|ref|YP_759290.1| DNA replication and repair protein RecF [Hyphomonas neptunium ATCC
           15444]
 gi|114738241|gb|ABI76366.1| DNA replication and repair protein RecF [Hyphomonas neptunium ATCC
           15444]
          Length = 370

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 130/370 (35%), Positives = 208/370 (56%), Gaps = 9/370 (2%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            +  L++++FRNYA L L  DA+     G NG GKTN+LEA+S   PGRG R A  +++T
Sbjct: 3   ALTRLSLTDFRNYAGLTLRLDARPVCLYGSNGAGKTNLLEAVSQFGPGRGLRSAQLSEMT 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           R  +P  ++  A ++  +    ISI L+T    + R ++I+        +L + +RI WL
Sbjct: 63  RRDAPGGWALAATLDDEQK---ISITLDTA-GTAKRTVRIDGAPA-SPGDLAERIRIVWL 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P+MD +F G + +RRRF DR+V A  P H +    +++ +  RN L+  G+ D +W  +
Sbjct: 118 TPAMDGVFRGGASDRRRFFDRLVMAHLPAHGKAAARYDKALAERNALIERGHVDPAWADA 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS--LTGFLDGKFDQSFCAL 243
           IEA++AE G ++ I R  ++ AL   I +   + +FP   L+            + F  +
Sbjct: 178 IEARLAEAGTEMAINRAIVLEALQIAI-DARPEGHFPKADLTLEGAAEAAALKGEDFRTI 236

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +        GR+ D  + RTL GPHR+DL V +   A      STG+QK +L+G+ LA 
Sbjct: 237 FDLLVDAYHSGRRRDIGAGRTLSGPHRTDLAVIHRPTAAPAGEASTGQQKALLIGLVLAS 296

Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           A  +S   +G +P+LLLDE +AHLD D+R ALF  +T +G Q ++TGT+  +F++  + A
Sbjct: 297 ATALSAGGSGPSPLLLLDEAAAHLDPDRRAALFDELTVLGGQAWLTGTEAFLFEAFGDRA 356

Query: 363 KFMRISNHQA 372
           + +R+    A
Sbjct: 357 QRIRVDEGSA 366


>gi|297543502|ref|YP_003675804.1| DNA replication and repair protein RecF [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296841277|gb|ADH59793.1| DNA replication and repair protein RecF [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 362

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 162/371 (43%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRN    R+ F     IF G N  GK+N+LE+I  LS GR FR +   ++
Sbjct: 1   MYVKELFVDNFRNLEKQRIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKSTEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G   F   + +    +   D  I+   + D   + +++N   I+ + EL   L    
Sbjct: 61  VRFGENYF---YVKAIICQENNDKKIEFGYKKD-GNKVIKVNSNKIKSISELLGQLLTVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF--DSSW 182
             P    I       RR++LD  +  I+  +   ++ + +++  RN+LL         + 
Sbjct: 117 FSPEDLNIIKEGPSHRRKYLDSCISIIEKNYLYNLMQYNKILMNRNKLLKNIKEGKSKNI 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+ E G KI + R   +  L   I +++ + +    ++     +  K       
Sbjct: 177 LEIFDDQLVEYGAKIIMVRQNYLKNLEINIKKFLLEISNEKAEIVYLNSVGLKDASDEET 236

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +K+   +KL     +D     T +GPHR D  +   +   +  + S G+Q+   + + L+
Sbjct: 237 VKKRLKEKLSKNIDLDLKYLTTQVGPHREDFKI-IINGYDSRVYSSQGQQRTAALCLKLS 295

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              ++   T   P+LLLD++ + LDE+++  +   +   G Q F+T T K     L    
Sbjct: 296 EFEILKKATNEKPVLLLDDVMSELDENRKKYVLEKLK--GFQTFITHTTKR---DLKGDC 350

Query: 363 KFMRISNHQAL 373
            + +ISN   +
Sbjct: 351 -YFKISNGVVI 360


>gi|229846049|ref|ZP_04466161.1| recombination protein F [Haemophilus influenzae 7P49H1]
 gi|229811053|gb|EEP46770.1| recombination protein F [Haemophilus influenzae 7P49H1]
          Length = 359

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 83/367 (22%), Positives = 158/367 (43%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    I ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGKIQESQHQWSIGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I E   +   P ++++++     + +       
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEI-EQTCRLFLPELEINVSFHQGWEKN------- 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  K
Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKK 346

Query: 364 FMRISNH 370
              + N 
Sbjct: 347 MFSVHNG 353


>gi|183597170|ref|ZP_02958663.1| hypothetical protein PROSTU_00413 [Providencia stuartii ATCC 25827]
 gi|188023484|gb|EDU61524.1| hypothetical protein PROSTU_00413 [Providencia stuartii ATCC 25827]
          Length = 364

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 152/371 (40%), Gaps = 16/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         +G NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MILSRLLIRDFRNIEDADLALANGFNFLIGPNGSGKTSVLEAIYTLGHGRAFRSIQANRV 60

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R     F        ++       + +      D  VR   I+      + EL K L +
Sbjct: 61  IRHEQAQFILHGKLGHLDASRKALSLGLSKNREGDSKVR---IDGTDGHKIAELAKLLPM 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             + P    + +G    RR F+D   F  +P       D +RL++ RN  L +       
Sbjct: 118 QLITPEGFTLLNGGPKYRRAFIDWGCFHNEPLFFSVWSDLKRLLKQRNAALRQ-VSRYEQ 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+A L  +I+  R E I  ++  I +  Q +  P   LS++       +     
Sbjct: 177 IRHWDQQLAPLAEQISQWRSEYIAGIAENIEQTCQ-QFLPEFVLSVSFQRGWDKEI---- 231

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
              +Y++ L    + D M   T  GPH++DL +      +     S G+ K+++  + LA
Sbjct: 232 ---DYSELLERQFERDKMLTYTASGPHKADLRIRANGTPVEDML-SRGQLKLLMCALRLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNET 361
                +  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  T + V D ++  
Sbjct: 288 QGEFFTQQSGQRCLYLLDDFASELDSGRRQLLAARLKATQAQVFVSAITPEQVKDMIDVN 347

Query: 362 AKFMRISNHQA 372
           +K   + + + 
Sbjct: 348 SKMFSVEHGKI 358


>gi|219847382|ref|YP_002461815.1| DNA replication and repair protein RecF [Chloroflexus aggregans DSM
           9485]
 gi|254790467|sp|B8G3J6|RECF_CHLAD RecName: Full=DNA replication and repair protein recF
 gi|219541641|gb|ACL23379.1| DNA replication and repair protein RecF [Chloroflexus aggregans DSM
           9485]
          Length = 392

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 97/392 (24%), Positives = 169/392 (43%), Gaps = 25/392 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRNY    +       +  G N  GKT++LEAI +L+  R  R +S  D+
Sbjct: 1   MYIHHLALRDFRNYRRQDVALSPTTILLYGPNAAGKTSLLEAIFYLATTRSPRLSSDRDL 60

Query: 65  TRI------GSPSFFSTFARVEGMEGLADISIKLETRDDRSV-------RCLQINDVVIR 111
            R       G+P F    A VE   G   + I ++ R D          + ++I+    R
Sbjct: 61  VRWDAVGEAGAPPFARIAADVERRIGPVRLEILVQRRLDDGGQPLNGAQKLVRIDKRPAR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            +D L   LR+    P+   +  G   ERRR+LD  +  +DP + R +  +++++  RN 
Sbjct: 121 AID-LIGQLRVVLFTPTDVMLVDGPPAERRRYLDITLSQLDPHYVRTLAYYQKILLQRNS 179

Query: 172 LLTEGYFDSSW-------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           LL                    + ++A  G  +   R+  +  LS+L     +K +    
Sbjct: 180 LLRAWREQRRLPRNVDAELGYWDQELAAAGGYLLAERLRAVVELSALAGSIYRKISGGEH 239

Query: 225 KLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           +L +        D  +   +L E         R  +    +TL GPHR DL+ +     +
Sbjct: 240 ELQIEYIASCDLDAARDAGSLAERLRLAFAAQRTDELARGQTLCGPHRDDLVFNVAGVNL 299

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              +GS G+Q+ + + + +  A L+    G AP+LLLD++ + LD  +R  L  ++    
Sbjct: 300 G-RYGSRGQQRTIALALKIGEAELMQQRGGDAPVLLLDDVLSELDNRRRMHLLDLILRPQ 358

Query: 343 SQIFMTGTDKSVFDS-LNETAKFMRISNHQAL 373
            Q  +T T+ S F +     A+  R+ + Q  
Sbjct: 359 QQTLLTATNLSDFSADFLAAARRFRVEDGQLF 390


>gi|212694619|ref|ZP_03302747.1| hypothetical protein BACDOR_04149 [Bacteroides dorei DSM 17855]
 gi|212663120|gb|EEB23694.1| hypothetical protein BACDOR_04149 [Bacteroides dorei DSM 17855]
          Length = 371

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 21/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N     L F  +   F+G NG+GKTN+L+A+ +LS  +       +  
Sbjct: 1   MILKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   ++   L+ R  +  +    N      + +    + + 
Sbjct: 61  IRH-EGDFFVIQGFYETNQGDPEEVYCGLKCRQKKQFKR---NKKEYSRLSDHIGFIPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   D   
Sbjct: 117 MVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA  G  +   R E I         +    +    K++L             A
Sbjct: 177 MLVWEEMMAFAGEIVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAY--------ESHA 228

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +       + + RK D +   +L G H+ DL++   D  I    GS G+ K  L+ + LA
Sbjct: 229 MNGNLLDIIKESRKRDRIMGYSLRGIHKDDLVMQLGDFPIKRE-GSQGQNKTYLIALKLA 287

Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360
               +  T +   P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D + +
Sbjct: 288 QFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRDHLDKILK 347

Query: 361 T----AKFMRISNH 370
                 +   + + 
Sbjct: 348 KIEREYRVFSVEDG 361


>gi|224023819|ref|ZP_03642185.1| hypothetical protein BACCOPRO_00535 [Bacteroides coprophilus DSM
           18228]
 gi|224017041|gb|EEF75053.1| hypothetical protein BACCOPRO_00535 [Bacteroides coprophilus DSM
           18228]
          Length = 374

 Score =  301 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 156/374 (41%), Gaps = 21/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F  +    +G NG+GKTN+++A+ +LS  +       +  
Sbjct: 1   MWLKRISILNYKNLEQVDLAFSRKMNCIIGRNGMGKTNLMDAVYYLSFCKSATNPVDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  FF      E  +G   ++   L+ R  +  +    N      + +    + + 
Sbjct: 61  ICHDQD-FFVVQGFYETDDGDPEEVYCGLKRRQKKQFKR---NKKEYTRLSDHIGLIPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   +   
Sbjct: 117 MVSPADSLLIAGGSEERRRFMDVVISQFDREYLDALIRYNKALLQRNTLLKAEVEPEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            +  E  MA  G  +   R E I+    +   Y    +    ++SL             A
Sbjct: 177 MAVWEEAMAASGEVVYRKRREFIDEFIPVFQSYYSYISQGREQVSLAY--------ESHA 228

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            +    + L   R+ D +   +L G H+ DLI+   D  I    GS G+ K  L+ + LA
Sbjct: 229 AEGNLLELLAASRQRDRIMGYSLKGVHKDDLIMQLGDFPIKRE-GSQGQNKTYLIALKLA 287

Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD---- 356
               +  T +   PI+LLD+I   LD  +   + ++V  D   QIF+T T++   D    
Sbjct: 288 QFEFLKRTGSHTTPIVLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRDHLDKILK 347

Query: 357 SLNETAKFMRISNH 370
            +    K   + N 
Sbjct: 348 KIEGDYKLFEVDNG 361


>gi|241889743|ref|ZP_04777041.1| DNA replication and repair protein RecF [Gemella haemolysans ATCC
           10379]
 gi|241863365|gb|EER67749.1| DNA replication and repair protein RecF [Gemella haemolysans ATCC
           10379]
          Length = 378

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 78/381 (20%), Positives = 159/381 (41%), Gaps = 20/381 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK L +  FRNY S  +       + VG+N  GKTNI+E+I  L+ G+ +R  S ++ 
Sbjct: 1   MKIKSLKLLYFRNYLSTNIEVHPSLNVLVGNNANGKTNIIESIFCLALGKSYRTKSDSEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +   +      +    D  + +    +   +  +I  +    + +    L +  
Sbjct: 61  IMFGETATAMSC-----IVNKNDRELDIMLGINNKGKSAKIAGIKKTKLTDFVGELNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P   +I  G    RR F++R  +     + +  + ++ L++ RN  L +   +     
Sbjct: 116 FSPEDLQIVKGSPALRREFMNREFYQFSRIYHKYYLMYQHLLKQRNSYLKDMRKNPKDEM 175

Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
             ++  ++ +Q+ ++ + I   RV  +  +S L  + +   +     L +          
Sbjct: 176 SLAYLETLTSQLVKVALYITKERVSFVRDISKLTYKNMLNISNGQETLKIKYKSSVLDAL 235

Query: 239 SFCAL------KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           +   +      +E   K +      D M   T IGP   DL     D    + + S G+Q
Sbjct: 236 NIAEINDESFTEENLTKVMMKKSFDDIMRGSTKIGPQHDDLEFYINDLDAKM-YASQGQQ 294

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD- 351
           + +++ + LA    +   TG  P+LLLD++ + LD++++  L   + +   Q F+T    
Sbjct: 295 RSIVLSLKLAEINFLKEKTGTYPVLLLDDVLSELDKNRQLKLLDAINE-NVQTFITTPSI 353

Query: 352 KSVFDSLNETAKFMRISNHQA 372
             + + L + AK  +I +   
Sbjct: 354 SDIKEDLLKKAKVFKIEDGNI 374


>gi|259418051|ref|ZP_05741970.1| recombination protein F [Silicibacter sp. TrichCH4B]
 gi|259346957|gb|EEW58771.1| recombination protein F [Silicibacter sp. TrichCH4B]
          Length = 365

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 133/370 (35%), Positives = 202/370 (54%), Gaps = 11/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S FR++    L  DA+     G+NG GKTNILEA+S  SPGRG RRAS AD+
Sbjct: 2   LALTSLFMSHFRSHLRADLHLDARPVAIHGNNGAGKTNILEAVSLFSPGRGIRRASAADM 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +     ++      ++    E  + R V+     D        L +  R+ W
Sbjct: 62  ARRPEALGWKLKGLLQTTGPTFEVETSSEGGNARQVKI----DNKAASQVALGRIARVVW 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L+P+MDR++   +  RRRFLDR+  + DP H    + +E+ MR RNRLL +   D++W  
Sbjct: 118 LIPAMDRLWIEGAEGRRRFLDRIALSFDPDHAEATLAYEKAMRERNRLLKDNVRDAAWYR 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +E QMAE G +I+  RV+ ++ L++   E   +  FP  +L L    +G+  +S     
Sbjct: 178 VLEGQMAEAGFRIHQTRVDAVSRLTAAQKE--AETAFPVAELQLI-QAEGEMPESV---- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           ++    L  GR  D    RTL+GPHRSDL+  Y  K +     STGEQK +LV + LA+A
Sbjct: 231 DDLRAALDAGRARDLAVGRTLVGPHRSDLMGAYAAKGLPAKDCSTGEQKALLVSLILANA 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R +    G APILLLDE++AHLD ++R AL+  +  +G+Q +MTGT   +F  L + A+ 
Sbjct: 291 RALQAEEGSAPILLLDEVAAHLDGNRRAALYDEICALGTQAWMTGTGPELFQELGDRAQH 350

Query: 365 MRISNHQALC 374
           + + +   + 
Sbjct: 351 LEVVDQNGVS 360


>gi|289577269|ref|YP_003475896.1| DNA replication and repair protein RecF [Thermoanaerobacter
           italicus Ab9]
 gi|289526982|gb|ADD01334.1| DNA replication and repair protein RecF [Thermoanaerobacter
           italicus Ab9]
          Length = 362

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 162/371 (43%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRN    R+ F     IF G N  GK+N+LE+I  LS GR FR +   ++
Sbjct: 1   MYVKELFVDNFRNLEKQRIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKSTEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G   F   + +    +   D  I+   + D   + +++N   I+ + EL   L    
Sbjct: 61  VRFGENYF---YVKAIICQENNDKKIEFGYKKD-GNKVIKVNSNKIKSISELLGQLLTVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF--DSSW 182
             P    I       RR++LD  +  I+  +   ++ + +++  RN+LL         + 
Sbjct: 117 FSPEDLNIIKEGPSHRRKYLDSCISIIEKNYLYNLMQYNKILMNRNKLLKNIKEGKSKNI 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+ E G KI + R   +  L   I +++ + +    ++     +  K       
Sbjct: 177 LEIFDNQLVEYGAKIIMVRQNYLKNLEINIKKFLLEISNEKAEIVYLNSVGLKDASDEET 236

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +K+   +KL     +D     T +GPHR D  +   +   +  + S G+Q+   + + L+
Sbjct: 237 VKKRLKEKLSKNIDLDLKYLTTQVGPHREDFKI-IINGYDSRVYSSQGQQRTAALCLKLS 295

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              ++   T   P+LLLD++ + LDE+++  +   +   G Q F+T T K     L    
Sbjct: 296 EFEILKKATNEKPVLLLDDVMSELDENRKKYVLEKLK--GFQTFITHTTKR---DLKGDC 350

Query: 363 KFMRISNHQAL 373
            + +ISN   +
Sbjct: 351 -YFKISNGVVI 360


>gi|323705851|ref|ZP_08117423.1| DNA replication and repair protein RecF [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534847|gb|EGB24626.1| DNA replication and repair protein RecF [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 362

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 166/374 (44%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  F+N    +++F A   +  G N  GK+N+LE I  LS G+ FR +   D+
Sbjct: 1   MYLKELIVDNFKNLKHQKVIFSAGTNVIYGSNAQGKSNLLECIRLLSIGKSFRNSKNRDM 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                   +      V+G E   +   KL        R  ++N+  I+ + EL   +  +
Sbjct: 61  VCFDVDYYYIKGVFDVDGEEVTVETGYKL-----NQNRFFKVNNNKIKNISELIGVILTT 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181
              P    I  G    RRR++D  +  I   +   +I + +++  RN++L +  F     
Sbjct: 116 IFSPDDLNIVKGSPSLRRRYMDASISMIKRNYLYDIIQYNKVLANRNKVLKDVKFKKESA 175

Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                ++ Q++  G KI + R + IN L  ++ + VQ  +   + L     +  K D   
Sbjct: 176 RLLDIMDEQLSFFGSKIIMYRRQYINNLDLIVKKIVQDISCEKVDLIYWNNVTDKID-DI 234

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            ++K+    KL   R +D     T  GPHR D+ +        I   S G+Q+ + + + 
Sbjct: 235 KSIKDLLLNKLILNRDVDIKYGDTKYGPHRDDVKIFINGHDSRI-FASQGQQRTIALCLK 293

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   +I +  G  PILLLD++ + LDE++R  +   V   G Q F+T T+K        
Sbjct: 294 LAEYEVIRSENGENPILLLDDVMSELDENRRKYILNKVE--GCQTFITHTEKKDVKG--- 348

Query: 361 TAKFMRISNHQALC 374
             K+  IS+   + 
Sbjct: 349 -DKYFLISDGLIIS 361


>gi|302388603|ref|YP_003824424.1| DNA replication and repair protein RecF [Thermosediminibacter
           oceani DSM 16646]
 gi|302199231|gb|ADL06801.1| DNA replication and repair protein RecF [Thermosediminibacter
           oceani DSM 16646]
          Length = 367

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/373 (24%), Positives = 158/373 (42%), Gaps = 12/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + + +FRN+    + F     +  GDNG GKTN+LEAI FL   R  R     DV
Sbjct: 1   MHLTKIRLFDFRNFREAEVEFSGGLNVLYGDNGQGKTNLLEAIHFLCNLRPVRTTREQDV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                   +      +   G  D  + L   D + VR      V    + EL   +   +
Sbjct: 61  IAWDKTKAY-LKGVFDTSSGPVDRELLLVAGDRKKVREC---GVERHRLSELYWQIHAVF 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
             P    +  G   ERRRFLD ++  + P++ R + ++ R +  RNRLL +   + +   
Sbjct: 117 FSPDDLSLVKGRPSERRRFLDLIIARLKPQYGRYLSEYNRALFHRNRLLKDLKKNRTLIT 176

Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSF 240
              + + Q++ LG  I   R      L  L+ +Y    +    ++ +           S 
Sbjct: 177 ALDAWDEQLSSLGTVILKTRAAFTEKLFPLVRKYYLYFSREEREIEIKYAGSIVSTGTSP 236

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            ++ E +   L      D  S  T +GPHR DL      + +    GS GEQ+ + + + 
Sbjct: 237 ESIHEAFLAALRKSLPQDLASGYTRVGPHRDDLQFLLGGRDLRY-FGSQGEQRTLSLSLK 295

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLN 359
            A  R+   TTG  PILLLD+  + LD ++R  +     +   Q+F+T  D S + + + 
Sbjct: 296 FAERRVFFETTGVYPILLLDDAMSELDANRRRWILE--GEEPCQVFVTTVDLSAIPEDIL 353

Query: 360 ETAKFMRISNHQA 372
           + ++  R+     
Sbjct: 354 KKSRVYRVRAGSV 366


>gi|229843949|ref|ZP_04464090.1| recombination protein F [Haemophilus influenzae 6P18H1]
 gi|229812943|gb|EEP48631.1| recombination protein F [Haemophilus influenzae 6P18H1]
          Length = 359

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 158/367 (43%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++     + +       
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  K
Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKK 346

Query: 364 FMRISNH 370
              + N 
Sbjct: 347 MFSVHNG 353


>gi|237711116|ref|ZP_04541597.1| DNA replication and repair protein RecF [Bacteroides sp. 9_1_42FAA]
 gi|229454960|gb|EEO60681.1| DNA replication and repair protein RecF [Bacteroides sp. 9_1_42FAA]
          Length = 371

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 21/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N     L F  +   F+G NG+GKTN+L+A+ +LS  +       +  
Sbjct: 1   MILKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   ++   L+ R  +  +    N      + +    + + 
Sbjct: 61  IRH-EGDFFVIQGFYETNQGDPEEVYCGLKRRQKKQFKR---NKKEYSRLSDHIGFIPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   D   
Sbjct: 117 MVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA  G  +   R E I         +    +    K++L             A
Sbjct: 177 MLVWEEMMAFAGEVVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAY--------ESHA 228

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +       + + RK D +   +L G H+ DL++   D  I    GS G+ K  L+ + LA
Sbjct: 229 MNGNLLDIIKESRKRDRIMGYSLRGIHKDDLVMQLGDFPIKRE-GSQGQNKTYLIALKLA 287

Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360
               +  T +   P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D + +
Sbjct: 288 QFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRDHLDKILK 347

Query: 361 T----AKFMRISNH 370
                 +   + + 
Sbjct: 348 KIEREYRVFSVEDG 361


>gi|255746804|ref|ZP_05420750.1| DNA recombination and repair protein RecF [Vibrio cholera CIRS 101]
 gi|262155883|ref|ZP_06029005.1| DNA recombination and repair protein RecF [Vibrio cholerae INDRE
           91/1]
 gi|262167102|ref|ZP_06034817.1| DNA recombination and repair protein RecF [Vibrio cholerae RC27]
 gi|255735561|gb|EET90960.1| DNA recombination and repair protein RecF [Vibrio cholera CIRS 101]
 gi|262024488|gb|EEY43174.1| DNA recombination and repair protein RecF [Vibrio cholerae RC27]
 gi|262030335|gb|EEY48977.1| DNA recombination and repair protein RecF [Vibrio cholerae INDRE
           91/1]
          Length = 357

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 82/361 (22%), Positives = 153/361 (42%), Gaps = 12/361 (3%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +     
Sbjct: 2   IQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNECSE 61

Query: 72  FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130
            F      E         + +     R     ++I     + + +L + L +  + P   
Sbjct: 62  LFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQLIHPEGF 121

Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190
            + +    +RR F+D  VF  +P        F+RL + RN LL          S  + ++
Sbjct: 122 ELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-LSYWDQEL 180

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           A L  +I+  R   +N L   + E + +   P   + L  +   + DQ        Y   
Sbjct: 181 ARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP-------YQSI 232

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
           L    + D     T  GP+++DL +      +     S G+ K+++  + +A  + ++  
Sbjct: 233 LEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLMVCALRVAQGQHLTEL 291

Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRISN 369
           TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++K   +++
Sbjct: 292 TGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSKTFHVAH 351

Query: 370 H 370
            
Sbjct: 352 G 352


>gi|311897310|dbj|BAJ29718.1| putative DNA replication and repair protein RecF [Kitasatospora
           setae KM-6054]
          Length = 387

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 166/370 (44%), Gaps = 19/370 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +++     R A+ A +
Sbjct: 1   MHVAHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYVATLGSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       + V G  G     ++LE    ++ R        +R  D L   LR   
Sbjct: 61  IRLGAERAVIRASVVAG--GGRATLVELELTAGKANRARLNRSDNVRPRDVL-GVLRTVL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 118 FAPEDLALVKGDPGERRRFLDELLTARTPRLAGVRSDYERVLKQRNALLKTAATARRAGG 177

Query: 177 --YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFL 232
               D +     +  +A  G ++   R++++ AL  L+ E  ++   +     L      
Sbjct: 178 GKSADLATLEVWDGHLARAGAELTAFRIQLVAALQPLVAEAYRQLAPDGGDTVLEYRSSF 237

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           +G+   S    + +    L   R+ +     TL+GPHR +L++          + S GE 
Sbjct: 238 EGELPTSREQAERQLLDALQSLRRQEIERGLTLVGPHRDELLLRLGPLPAK-GYASHGES 296

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTD 351
               + + LA   L+    G  P+L+LD++ A LD  +R+ L  +V   G Q+ +T    
Sbjct: 297 WSYALALRLASYELLRAE-GEEPVLVLDDVFAELDARRRDRLAELVAG-GEQVLVTAAVA 354

Query: 352 KSVFDSLNET 361
           + V  +L+  
Sbjct: 355 EDVPKALHGA 364


>gi|265750702|ref|ZP_06086765.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_33FAA]
 gi|263237598|gb|EEZ23048.1| DNA replication and repair protein recF [Bacteroides sp. 3_1_33FAA]
          Length = 371

 Score =  300 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 21/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N     L F  +   F+G NG+GKTN+L+A+ +LS  +       +  
Sbjct: 1   MILKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   ++   L+ R  +  +    N      + +    + + 
Sbjct: 61  IRH-EGDFFVIQGFYETNQGDPEEVYCGLKRRQKKQFKR---NKKEYSRLSDHIGFIPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   D   
Sbjct: 117 MVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA  G  +   R E I         +    +    K++L             A
Sbjct: 177 MLVWEEMMAFAGEIVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAY--------ESHA 228

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +       + + RK D +   +L G H+ DL++   D  I    GS G+ K  L+ + LA
Sbjct: 229 MNGNLLDIIKESRKRDRIMGYSLRGIHKDDLVMQLGDFPIKRE-GSQGQNKTYLIALKLA 287

Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360
               +  T +   P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D + +
Sbjct: 288 QFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRDHLDKILK 347

Query: 361 T----AKFMRISNH 370
                 +   + + 
Sbjct: 348 KIEREYRVFSVEDG 361


>gi|157959833|ref|YP_001499867.1| recombination protein F [Shewanella pealeana ATCC 700345]
 gi|189039643|sp|A8GYE5|RECF_SHEPA RecName: Full=DNA replication and repair protein recF
 gi|157844833|gb|ABV85332.1| DNA replication and repair protein RecF [Shewanella pealeana ATCC
           700345]
          Length = 360

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 90/373 (24%), Positives = 163/373 (43%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I  FRN +S +L       +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLSRLHIESFRNISSAQLQPGDGLNLIYGHNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +       + FA +E  +  + I ++     D  V+   IN   ++ +  L + L I  
Sbjct: 61  IKND-DDALTLFANMESGDEQSKIGLRRFRSGDIEVK---INGDKVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  DPR     ++  R+++ RN+LL +G   SS   
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDPRFYAAWVNVRRILKQRNQLLRDGSPYSS-IQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +       +   R + +++L+ L+   +  E  P + + ++              K
Sbjct: 176 FWDKEFIRYAELVTDIRKQYVDSLNELLKGII-GEFLPQVDVKVSFTRGW-------DAK 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L      D  +  T+ GPH++DL +         A  S G+ K+++  + +A  
Sbjct: 228 TEYAQLLETQYPRDLATGYTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF--DSLNETA 362
           +L+        I L+D++ + LD   R  L + + D G+Q+F+T  + +      +   +
Sbjct: 287 KLLKQQIDKKSIYLVDDLPSELDAKHRKLLLQQLADTGAQVFVTAIEPAAIVDSLITPPS 346

Query: 363 KFMRISNHQALCI 375
           K   +   +   I
Sbjct: 347 KMFHVEQGRVTVI 359


>gi|163849398|ref|YP_001637442.1| DNA replication and repair protein RecF [Chloroflexus aurantiacus
           J-10-fl]
 gi|222527396|ref|YP_002571867.1| DNA replication and repair protein RecF [Chloroflexus sp. Y-400-fl]
 gi|189039618|sp|A9WDD4|RECF_CHLAA RecName: Full=DNA replication and repair protein recF
 gi|254790468|sp|B9LH68|RECF_CHLSY RecName: Full=DNA replication and repair protein recF
 gi|163670687|gb|ABY37053.1| DNA replication and repair protein RecF [Chloroflexus aurantiacus
           J-10-fl]
 gi|222451275|gb|ACM55541.1| DNA replication and repair protein RecF [Chloroflexus sp. Y-400-fl]
          Length = 392

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 99/392 (25%), Positives = 172/392 (43%), Gaps = 25/392 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRNY  L L      T+F G N  GKT++LEAI +L+  R  R +S  ++
Sbjct: 1   MYVHHLFLRDFRNYRRLDLALAPATTLFYGPNAAGKTSLLEAIFYLATTRSPRLSSDREL 60

Query: 65  TRI------GSPSFFSTFARVEGMEGLADISIKLETRDD-------RSVRCLQINDVVIR 111
            R       G+P F    A VE   G   + + ++ R D        + + ++I+    R
Sbjct: 61  VRWDAVGEAGTPPFARIAADVERRIGPVRLEVLVQRRADDDGQPLNGAQKLVRIDKRPAR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            +D L   LR+    P+   +  G   ERRR+LD  +  +DP + R +  +++++  RN 
Sbjct: 121 AID-LIGQLRVVLFTPTDLTLVDGPPAERRRYLDITLSQLDPHYVRTLAHYQKILLQRNS 179

Query: 172 LLTEGYFDS-------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           LL              +  +  + ++A  G  +   R+  I  L+ L     Q+ +    
Sbjct: 180 LLRAWREQRRVPRHVDAELAYWDQELAAAGGYLLAERLRAIVELNDLAGPLYQEMSGGED 239

Query: 225 KLSLTGFL--DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           +L +      D    +    L E         R  +    +TL GPHR DLI       +
Sbjct: 240 RLQIEYAASCDLGTARDAGGLAERLLLAFAAQRSDELARGQTLCGPHRDDLIFTVAGINL 299

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              +GS G+Q+ + + + +  A L+   +G AP+LLLD++ + LD  +R  L  ++    
Sbjct: 300 G-RYGSRGQQRSIALALKIGEAGLMRRRSGEAPVLLLDDVLSELDAQRRAHLLALIHHPD 358

Query: 343 SQIFMTGTDKSVFDS-LNETAKFMRISNHQAL 373
            Q  +T TD S F +      +  R+ + Q  
Sbjct: 359 QQTLLTATDLSDFSADFLAAVRRYRVEDGQVF 390


>gi|329770366|ref|ZP_08261748.1| hypothetical protein HMPREF0433_01512 [Gemella sanguinis M325]
 gi|328836489|gb|EGF86149.1| hypothetical protein HMPREF0433_01512 [Gemella sanguinis M325]
          Length = 378

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 90/381 (23%), Positives = 170/381 (44%), Gaps = 20/381 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK L +  FRNY SL +       + VGDN  GKTNI+E+I  L+ G+ +R  S ++ 
Sbjct: 1   MKIKTLKLLYFRNYLSLNIEVHPSLNVLVGDNANGKTNIIESIFCLALGKSYRTKSDSEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +   +   +E  + + DI + +    +   +  +I  +    + +    L +  
Sbjct: 61  IMFGEEAAAMSCV-LEKNDKMLDIMLGI----NNKGKSAKIAGLKKTKLTDFVGELNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P   +I  G    RR F++R  +     + +  + ++ L++ RN  L +   +     
Sbjct: 116 FSPEDLQIIKGSPSLRREFINREFYQFSRIYHKYYLLYQHLLKQRNSYLKDMRKNPKDEF 175

Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------FL 232
             ++  +I +Q+ ++ + I   R   I  LS L  + +   +     L L         L
Sbjct: 176 SLAYLETITSQLVKIAMYITKERSLFIKNLSKLAQKNMLNISNHKEDLELKYKSSILDML 235

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           +    +     +E   KK+ D    D M   T IGPH+ DL   + +K     + S G+Q
Sbjct: 236 NINSVEDKDFNEENIIKKIMDKSYDDIMRGSTRIGPHQDDLEF-FINKLDAKMYASQGQQ 294

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD- 351
           + +++ + L+    + + TG  PILLLD++ + LD +++  L   + +   Q F+T    
Sbjct: 295 RSIVLSLKLSEIDYLKSKTGSYPILLLDDVLSELDRNRQLKLLDAINE-NVQTFITTPSI 353

Query: 352 KSVFDSLNETAKFMRISNHQA 372
             + + L + AK  +I+N   
Sbjct: 354 SDIKEDLLKKAKVFKINNGTI 374


>gi|319897497|ref|YP_004135694.1| DNA replication and repair protein recf [Haemophilus influenzae
           F3031]
 gi|317433003|emb|CBY81374.1| DNA replication and repair protein RecF [Haemophilus influenzae
           F3031]
          Length = 359

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 157/367 (42%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPGFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ +L  +++  R E   AL   I +  Q    P ++++++     + +       
Sbjct: 176 IWDVELTKLAHQVSQWRTEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  K
Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKK 346

Query: 364 FMRISNH 370
              + N 
Sbjct: 347 MFSVHNG 353


>gi|300725946|ref|ZP_07059408.1| RecF protein [Prevotella bryantii B14]
 gi|299776797|gb|EFI73345.1| RecF protein [Prevotella bryantii B14]
          Length = 368

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 157/375 (41%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  +++  ++N  +  LV   +   F+G NGVGKTN+L+A+ +LS          +  
Sbjct: 1   MVLNNISVINYKNIRTADLVLSPKINCFIGQNGVGKTNLLDAVYYLSFCHSAYNPMDSQC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  FF          G ++       R  +  +  + N    + + +    + + +
Sbjct: 61  ITHDED-FFVLEGNYSTDNGDSENIYCGMKRGTK--KHFKRNKKEYKRLSQHIGLIPLIF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + PS   +  G S  RR+ +D ++   D  +   + ++ + ++ RN LL  E   D S  
Sbjct: 118 ISPSDSFLIEGGSEGRRKLMDVVISQYDNTYMDALNNYNKALQQRNALLKMEDEPDVSLL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E +MAE G  I   R + +N L  +  E  +K +     +SL     G+        
Sbjct: 178 DIWEHEMAEQGTLIYQKRDDFVNKLVPVFQEIYRKISGDRETVSLRYVSHGQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + +    +   R  D     +L G HR DL +   D  +    GS G+ K  ++ + LA 
Sbjct: 230 RGDLYDVISRDRFKDRAVGYSLHGVHRDDLEMLIGDYQMKRE-GSQGQNKTFVLALKLAQ 288

Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSLNET 361
              +    +G  P+LLLD+I   LD D+   +  +V+     QIF+T T++   D + + 
Sbjct: 289 FDFLKRTASGTTPLLLLDDIFDKLDADRVEQIVNLVSSNNYGQIFITDTNRDHLDRILKH 348

Query: 362 A----KFMRISNHQA 372
           +    K   + N + 
Sbjct: 349 SNNVYKIFSVENGEI 363


>gi|163745037|ref|ZP_02152397.1| recombination protein F [Oceanibulbus indolifex HEL-45]
 gi|161381855|gb|EDQ06264.1| recombination protein F [Oceanibulbus indolifex HEL-45]
          Length = 365

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 127/372 (34%), Positives = 196/372 (52%), Gaps = 14/372 (3%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
            ++ +  L++S FR++    +  D +     G NG GKTNI+EAIS LSPGRG RR S  
Sbjct: 2   TQLYLSNLSLSHFRSHRRAVIDVDVRPVALYGPNGAGKTNIIEAISLLSPGRGLRRTSAQ 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D+ R      +     + G   L +I +  E    R  +     D        L +  R+
Sbjct: 62  DMARRPEALGWKMSGLLHGPSVLHEIEVWSEAGAARQTKI----DGKAAAQTALGRVARV 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL+P+MDR++   +  RRRFLDR+  ++ P H    + +E+ MR RNRLL +   + +W
Sbjct: 118 LWLIPAMDRLWIEGAEGRRRFLDRVTLSMLPDHAELSLSYEKAMRERNRLLKDMVREPAW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            +++EA+MAE G +I+  R++     +    +   +  FP   L L   +          
Sbjct: 178 YAALEARMAETGAQIHANRLQ--ALAALEAAQEEAQTAFPVATLELQCAMPSDV------ 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E   + L D R  D  + RTLIGPHR+DL   Y  K +     STGEQK +LV + LA
Sbjct: 230 --EALRRALSDNRMRDLSAGRTLIGPHRADLEGTYAAKGVAARDCSTGEQKALLVSLILA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +AR I+   G  P+LLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F+SL + A
Sbjct: 288 NARAIAADFGAPPLLLLDEVAAHLDATRRAALYDEICALGAQAWMTGTGPELFESLGDRA 347

Query: 363 KFMRISNHQALC 374
           +++ ++    L 
Sbjct: 348 QYVEVTEEDGLS 359


>gi|251791866|ref|YP_003006586.1| recombination protein F [Aggregatibacter aphrophilus NJ8700]
 gi|247533253|gb|ACS96499.1| DNA replication and repair protein RecF [Aggregatibacter
           aphrophilus NJ8700]
          Length = 358

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 161/372 (43%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN  ++ L +D      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLTVENFRNLQAVDLEWDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDQP-HFTLFGQIQEQQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F              RL++ RN  L +         
Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVSFYNLWASLSRLLKQRNAAL-QQVSSYQQMK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ +L  ++++ R E   AL   I E   +   P + +S++     + DQ+     
Sbjct: 176 IWDVELVKLAEQVSLLRAEYAQALQPEI-EQTCRLFLPELDISVSFHQGWEKDQN----- 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 230 --YAELLARNFERDRTLGYTVSGPQKADFRFKANGLPVEDIL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363
             +        I L+D+ ++ LD+ KR+ L   + + GSQ+F+T   ++  + +  +  +
Sbjct: 287 EHLMQQKQRHCIFLIDDFASELDQTKRSLLAERLQNSGSQVFVTAITQNQLNEMQPKKHR 346

Query: 364 FMRISNHQALCI 375
             +I + Q   +
Sbjct: 347 TFKIESGQIESL 358


>gi|239980784|ref|ZP_04703308.1| recombination protein F [Streptomyces albus J1074]
 gi|291452642|ref|ZP_06592032.1| recombination protein F [Streptomyces albus J1074]
 gi|291355591|gb|EFE82493.1| recombination protein F [Streptomyces albus J1074]
          Length = 377

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 162/386 (41%), Gaps = 24/386 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   L  D   T FVG NG GKTN++EA+ +L+     R +S   +
Sbjct: 1   MHVSHLSLADFRSYARADLALDPGVTAFVGPNGQGKTNLVEAVGYLATLSSHRVSSDQPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       A      G    +I+LE    ++ R  +IN        ++   +R   
Sbjct: 61  VRAGAERAVIRAAV---EHGERRRTIELELNPGKANRA-RINRSSQVKPRDVLGIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD +V A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAGVRSDYDRVLKQRNTLLKTAALARRHGG 176

Query: 179 ---DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233
              D S     +  +A  G ++   R+++I  L  L  +  ++       + L       
Sbjct: 177 RTMDLSTLDVWDQHLARAGAELLAQRLDLIATLQPLTDKAYEQLAPGGGPVHLEYKPSAA 236

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           G    +   L     + L + RK +     TL+GPHR   ++          + S GE  
Sbjct: 237 GTG-TTREELYGSLLEALAEVRKQEIERGVTLVGPHRD-DLLLRLGDLPAKGYASHGESW 294

Query: 294 VVLVGIFLAHARLISNTTGF---APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349
            + + + LA   L+    G     P+L+LD++ A LD  +R  L  +V   G Q+ +T  
Sbjct: 295 SLALALRLASYDLLRTEGGEATGEPVLVLDDVFAELDARRRERLAELVA-PGEQVLVTAA 353

Query: 350 TDKSVFDSLNETAKFMRISNHQALCI 375
            D+ V   L       R++  +   +
Sbjct: 354 VDEDVPPVL--AGARFRVTRGEVARV 377


>gi|237727469|ref|ZP_04557950.1| DNA replication and repair protein recF [Bacteroides sp. D4]
 gi|229434325|gb|EEO44402.1| DNA replication and repair protein recF [Bacteroides dorei
           5_1_36/D4]
          Length = 371

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 21/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N     L F  +   F+G NG+GKTN+L+A+ +LS  +       +  
Sbjct: 1   MILKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSAINPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   ++   L+ R  +  +    N      + +    + + 
Sbjct: 61  IRH-EGDFFVIQGFYETNQGDPEEVYCGLKRRQKKQFKR---NKKEYSRLSDHIGFIPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   D   
Sbjct: 117 MVSPADAELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEPDEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA  G  +   R E I         +    +    K++L             A
Sbjct: 177 MLVWEEMMAFAGEVVFRKRSEFIAEFIPTFQSFYSYISQDKEKVNLAY--------ESHA 228

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +       + + RK D +   +L G H+ DL++   D  I    GS G+ K  L+ + LA
Sbjct: 229 MNGNLLDIIKESRKRDRIMGYSLRGIHKDDLVMQLGDFPIKRE-GSQGQNKTYLIALKLA 287

Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360
               +  T +   P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D + +
Sbjct: 288 QFDFLKKTGSNSTPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNRDHLDKILK 347

Query: 361 T----AKFMRISNH 370
                 +   + + 
Sbjct: 348 KIEREYRVFSVEDG 361


>gi|301154705|emb|CBW14168.1| gap repair protein [Haemophilus parainfluenzae T3T1]
          Length = 360

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 81/369 (21%), Positives = 157/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLIVEKFRNLNAVDLEFDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVANRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +     +IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTIAKINGEDGNKIADLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F          +   RL++ RN  L++    S+   
Sbjct: 117 ITPEGLTLLNGGPSFRRAFLDWGLFHHHNSFHSSWVALNRLLKQRNAALSQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++     + +       
Sbjct: 176 IWDIELAKLAHQVSDWRAEYAEALRPEIEKTCQ-LFLPELEITVSFHQGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EY + L    + D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -EYGELLAQNFERDKAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
             +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T   +     +     K
Sbjct: 287 EHLMIQKQRHCIFLIDDFASELDQHKRALLAERLQQSGSQVFVTAITQGQLKEMQVGKGK 346

Query: 364 FMRISNHQA 372
             ++   + 
Sbjct: 347 LFQVDTGKI 355


>gi|309811297|ref|ZP_07705084.1| DNA replication and repair protein RecF [Dermacoccus sp. Ellin185]
 gi|308434604|gb|EFP58449.1| DNA replication and repair protein RecF [Dermacoccus sp. Ellin185]
          Length = 440

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 87/400 (21%), Positives = 163/400 (40%), Gaps = 40/400 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L++ +FR+Y    +      T FVG NG GKTN++EA  +L+     R ++ A +
Sbjct: 1   MRLRHLSLRDFRSYTEAEVELADGVTTFVGLNGQGKTNLVEAAGYLATLGSHRVSTDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+   F   A V       +  ++LE    R+ R  +I         ++   LR   
Sbjct: 61  VRFGAERAFVRAAVV---RDSHETVLELEIIPGRANRA-RIGRAAAGRPRDILGSLRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D++++++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDDLLVARQPRWAGARSDYDKILKQRNALLRSAQSALKKGA 176

Query: 178 -----------FDSSWCSS---IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
                         +   +       +A +G  +  AR+ ++  L+  + +   + +   
Sbjct: 177 RGARLSADQEVSRETALDTLVEWNTHLASVGSALVYARLRLLKDLAPYVAQAYDEVSAGR 236

Query: 224 --IKLSLTGFLDGKFD--------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
              +L+    L                  L++ + +     R  +     TL+GPHR D+
Sbjct: 237 SDARLAYVSSLPESTAARIASGEVPERDELEKAFHEAFELQRTREIERGVTLVGPHRDDV 296

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            +   D      + S GE     + + LA   L+ +  G  P+L+LD++ A LD  +R  
Sbjct: 297 TLTLGDLPAK-GYASHGESWSFALALRLAAFHLLRHDLGTDPVLVLDDVFAELDAGRRER 355

Query: 334 LFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372
           L  +V+D   Q+ +T   ++ V   L  + +   ++    
Sbjct: 356 LADMVSDAE-QVLITAAVEEDVPARL--SGQVFHVTKGHV 392


>gi|212712614|ref|ZP_03320742.1| hypothetical protein PROVALCAL_03709 [Providencia alcalifaciens DSM
           30120]
 gi|212684830|gb|EEB44358.1| hypothetical protein PROVALCAL_03709 [Providencia alcalifaciens DSM
           30120]
          Length = 364

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 152/373 (40%), Gaps = 20/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         +G NG GKT+ILEAI  L  GR FR      V
Sbjct: 1   MILSRLLIRDFRNIEDADLSLATGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQANRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIRVVDELNKHL 120
            R     F      + G  G  D   K+ +      R     ++I+      + EL K L
Sbjct: 61  IRHDQEQFI-----LHGKLGHPDTERKVLSLGLSKNREGDSKVRIDGTDGHKIAELAKLL 115

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +  + P    + +G    RR F+D   F  +        D +RL++ RN  L +     
Sbjct: 116 PMQLITPEGFTLLNGGPKYRRAFIDWGCFHNEALFFSTWSDLKRLLKQRNAALRQ-VTRY 174

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+A +  +I+  R E I  ++  I E   K+  P   LS++       +   
Sbjct: 175 EQIRHWDQQLAPISEQISQWRGEYIAGIAENI-EQTCKQFLPEFSLSVSFQRGWDKEI-- 231

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                +Y+++L    + D     T  GPH++DL +      +     S G+ K+++  + 
Sbjct: 232 -----DYSEQLERQFERDRALTYTSSGPHKADLRIRANGIPVEDML-SRGQLKLLMCALR 285

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLN 359
           LA     +  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  T   V D ++
Sbjct: 286 LAQGEYFTQQSGQQCLYLLDDFASELDSGRRQLLAARLKATQAQVFVSAITPAQVNDMID 345

Query: 360 ETAKFMRISNHQA 372
             +K   +   + 
Sbjct: 346 ANSKMFSVEQGKI 358


>gi|84684519|ref|ZP_01012420.1| recombination protein F [Maritimibacter alkaliphilus HTCC2654]
 gi|84667498|gb|EAQ13967.1| recombination protein F [Rhodobacterales bacterium HTCC2654]
          Length = 371

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 129/371 (34%), Positives = 200/371 (53%), Gaps = 9/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +S FR++    L  DA+     G NG GKTNILEA+S +SPGRG R AS  D+
Sbjct: 4   LYLRELTLSHFRSHRRAVLSLDARPIAIFGRNGAGKTNILEAVSLMSPGRGLRGASAEDM 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R      +     ++ +  + ++    E       R + I+      V  L +  R++W
Sbjct: 64  ARRPESVGWKLTGVLQSLHQVHEVETWAEPGGS---RNVTIDGKTAAQVA-LGRISRVTW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP MDR++   +  RR+FLDRM  + +P H   ++ +E+ MR RNRLL +G+ D+ W  
Sbjct: 120 LVPVMDRLWMEGADGRRKFLDRMAMSFEPGHGEAVLTYEKAMRDRNRLLKDGHRDAHWYG 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++EAQMA+ G  I   R   +  +     +   +  FP  +L L   L  +  ++    +
Sbjct: 180 ALEAQMAKAGAAIQENRRRTVALIVG--AQMSAQTAFPAAELQL---LHAEGAETGPEGE 234

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            E A+   + R  D M+ RTL+GPHR+DL   Y +KA+     STGEQK +LV + LAH 
Sbjct: 235 AELAEAYAESRPRDLMAGRTLVGPHRADLAATYAEKAMPARECSTGEQKALLVSLILAHG 294

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  P+LLLDE+SAHLD D+R AL+  +  +G+Q F+TGT   +F  L   A  
Sbjct: 295 RALAQDFGAPPMLLLDEVSAHLDADRRAALYDEIVALGAQAFLTGTGPELFTELGARAMH 354

Query: 365 MRISNHQALCI 375
           + + +     +
Sbjct: 355 IEVRDEAGQSL 365


>gi|293376414|ref|ZP_06622648.1| DNA replication and repair protein RecF [Turicibacter sanguinis
           PC909]
 gi|325839307|ref|ZP_08166773.1| DNA replication and repair protein RecF [Turicibacter sp. HGF1]
 gi|292644970|gb|EFF63046.1| DNA replication and repair protein RecF [Turicibacter sanguinis
           PC909]
 gi|325490589|gb|EGC92904.1| DNA replication and repair protein RecF [Turicibacter sp. HGF1]
          Length = 377

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 155/372 (41%), Gaps = 14/372 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L + +FRNY +  + F     I +G+N  GKT+++E++  LS  +  R +  + +
Sbjct: 1   MFIKKLVVKQFRNYENACVEFKKNINIIIGNNAQGKTSLIESMYVLSTTKSHRTSKDSQL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+      FAR+E           L     +  +    N +V + + +    L +  
Sbjct: 61  ILFGTD-----FARIEADIKREQDDFSLSLVLSKKGKKASYNGIVQKKLSDYVGKLIVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P    +  G    RRRF+D  +  + P +   +  + +L++ RN LL +   +     
Sbjct: 116 FAPEDLSLVKGGPQYRRRFMDMEIGQLSPSYLFHLGQYSKLLKQRNELLKQLRINRQNEL 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
               I  Q+    V +   R+E +  L S   +   + +    ++ L      K   +  
Sbjct: 176 LLDVITEQLVPHAVYVLNKRIEFLKQLESFCKDVHGEISKQKEEIQLDYINSFK---NIE 232

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
             +E   +K  +    D     T +GPHR D  V       T   GS G+Q+   + + L
Sbjct: 233 LDEESILQKYRELYDQDIQLGSTNLGPHRDDFSVSINGIN-THQFGSQGQQRTASLSMKL 291

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNE 360
           A   LI +     PILLLD++ + LD+ ++  L   + +   Q F+T T+     D + E
Sbjct: 292 AEIELIYSVLHEYPILLLDDVLSELDDTRQTQLLNTIKNK-VQTFITTTNIDGIDDEVIE 350

Query: 361 TAKFMRISNHQA 372
            A    I+N + 
Sbjct: 351 LADIFTINNAEI 362


>gi|325577773|ref|ZP_08148048.1| recombination protein F [Haemophilus parainfluenzae ATCC 33392]
 gi|325160518|gb|EGC72644.1| recombination protein F [Haemophilus parainfluenzae ATCC 33392]
          Length = 360

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 157/369 (42%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLIVEKFRNLNAVDLEFDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +     +IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGQIQESQHQWAVGLQ---KLRQGNTIAKINGEDGNKIADLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F          +   RL++ RN  L++     S   
Sbjct: 117 ITPEGLTLLNGGPSFRRAFLDWGLFHHHNSFHSSWVALNRLLKQRNAALSQNQP-YSTIK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++     + +       
Sbjct: 176 IWDIELAKLAHQVSDWRAEYAEALRPEIEKTCQ-LFLPELEITVSFHQGWEKET------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EY + L    + D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -EYGELLAQNFERDKAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
             +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T   +     +  E  K
Sbjct: 287 EHLMIQKQRHCIFLIDDFASELDQHKRALLAERLQQSGSQVFVTAITQGQLKEMQVEKGK 346

Query: 364 FMRISNHQA 372
             ++   + 
Sbjct: 347 LFQVDTGKI 355


>gi|297184290|gb|ADI20407.1| recombinational DNA repair ATPase (recf pathway) [uncultured alpha
           proteobacterium EB080_L43F08]
          Length = 364

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 135/368 (36%), Positives = 205/368 (55%), Gaps = 12/368 (3%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +RI +  L IS FR+Y ++ ++         G NG GKTNILEA+S LSPGRG RR+   
Sbjct: 2   SRIAVTNLKISHFRSYKNVEILTSGCPVALFGSNGAGKTNILEALSLLSPGRGLRRSRVD 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++ R      +   A ++ +  + +I         RSVR     D  +     L +  RI
Sbjct: 62  EMERKPEGIGWKISATLQSLGQIHEIETIYSGDGSRSVRI----DGKVTTQTALGRIARI 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WLVP MDR++   +  RRRFLDR+  + +P H +  +D+ER MR RN++L EG  D +W
Sbjct: 118 VWLVPVMDRLWVDGAEGRRRFLDRLSMSFEPSHAQYTLDYERAMRERNKMLKEGINDPAW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S++E+QMAE G KI   R+  I+ +     +   + +FP  +L L G        +   
Sbjct: 178 YSAVESQMAESGRKIEQNRLYTIDRIME--AQTNVQTSFPTAQLGLVG------ANNEAI 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           + ++      + R+ D  + RTL+GPHR DL   Y  K       STGEQK +LV + LA
Sbjct: 230 IVDDLKDAFANNRRADLFAGRTLVGPHRDDLTAMYSAKETAAKLCSTGEQKALLVSLILA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           + R +S   G APILLLDE+SAHLD +++NAL+  +  +G+Q +MTGT K +F++  + A
Sbjct: 290 NGRALSQDFGSAPILLLDEVSAHLDIERQNALYEEIISLGAQAWMTGTGKELFEAFGDRA 349

Query: 363 KFMRISNH 370
           +F+ ++  
Sbjct: 350 QFLEVNEA 357


>gi|114769642|ref|ZP_01447252.1| recombination protein F [alpha proteobacterium HTCC2255]
 gi|114549347|gb|EAU52229.1| recombination protein F [alpha proteobacterium HTCC2255]
          Length = 364

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 136/368 (36%), Positives = 205/368 (55%), Gaps = 12/368 (3%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +RI +  L IS FR+Y ++ ++         G NG GKTNILEA+S LSPGRG RR+   
Sbjct: 2   SRIAVTNLKISHFRSYKNVEILTSGCPVALFGSNGAGKTNILEALSLLSPGRGLRRSRVD 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++ R      +   A ++ +  + +I         RSVR     D  +     L +  RI
Sbjct: 62  EMERKPEGIGWKISATLQSLGQIHEIETIYSGDGSRSVRI----DGKVTTQTALGRIARI 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WLVP MDR++   +  RRRFLDR+  + +P H +  +D+ER MR RN++L EG  D +W
Sbjct: 118 VWLVPVMDRLWVDGAEGRRRFLDRLSMSFEPSHAQYTLDYERAMRERNKMLKEGINDPAW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S++E+QMAE G KI   R+  I+ +     +   + +FP  +L L G        +   
Sbjct: 178 YSAVESQMAESGRKIEQNRLYTIDRIME--AQTNVQTSFPTAQLGLVG------ANNEAI 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           + ++      + R+ D  + RTLIGPHR DL   Y  K       STGEQK +LV + LA
Sbjct: 230 IVDDLKDAFANNRRADLFAGRTLIGPHRDDLTAMYSAKETAAKLCSTGEQKALLVSLILA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           + R +S   G APILLLDE+SAHLD +++NAL+  +  +G+Q +MTGT K +F++  + A
Sbjct: 290 NGRALSQDFGSAPILLLDEVSAHLDIERQNALYEEIISLGAQAWMTGTGKELFEAFGDRA 349

Query: 363 KFMRISNH 370
           +F+ ++  
Sbjct: 350 QFLEVNEA 357


>gi|281424150|ref|ZP_06255063.1| RecF protein [Prevotella oris F0302]
 gi|281401711|gb|EFB32542.1| RecF protein [Prevotella oris F0302]
          Length = 366

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 147/374 (39%), Gaps = 18/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I  ++N     +    +   F+G NGVGKTN+L+A+ +LS  R       + V
Sbjct: 1   MILNRLSILNYKNIREATISLSPKLNCFIGSNGVGKTNVLDAVHYLSFCRSAFNPIDSQV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F          EG  +       R  +  +  + N    R + +    + + +
Sbjct: 61  IMHNQD-FLVLEGNYTTDEGEEEQIYCGMKRGTK--KHFKRNKKEYRRLSQHIGLIPLVF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             PS   +  G S ERRR LD ++   D  +   +  + + ++ RN LL  E   D +  
Sbjct: 118 ASPSDSVLIEGGSEERRRLLDLVISQYDHAYIEALSAYNKALQQRNALLKMEDEPDKALL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E QMA  G  I   R   +  L  +        +  H  +SL     G+        
Sbjct: 178 EIWEEQMAMNGEVIYQKRDAFVKRLVPVFQNIYSHISGDHETVSLNYISHGQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +      +   R  D     +L G HR DL +      +    GS G+ K   + + LA 
Sbjct: 230 RGSLLDTIQRDRYKDRAVGYSLHGVHRDDLEMLLDGYQMKRE-GSQGQHKTYALALKLAQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSLNETA 362
              + +T+   P+LLLD+I   LD D+   + ++V   G  QIF+T T++   D +    
Sbjct: 289 FDFLRHTSNSTPLLLLDDIFDKLDADRVEQIVQLVGGEGFGQIFITDTNRDHLDRILANG 348

Query: 363 KF----MRISNHQA 372
            F      ++  + 
Sbjct: 349 DFDYRLFSVNKGEI 362


>gi|169351629|ref|ZP_02868567.1| hypothetical protein CLOSPI_02410 [Clostridium spiroforme DSM 1552]
 gi|169291851|gb|EDS73984.1| hypothetical protein CLOSPI_02410 [Clostridium spiroforme DSM 1552]
          Length = 365

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 94/375 (25%), Positives = 167/375 (44%), Gaps = 21/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K LN+  FRNY+   + F     I +G+NG GKTN++EAI  LS G+ FR      +
Sbjct: 1   MIVKSLNLYNFRNYSHFVIDFSQDINILIGNNGQGKTNLIEAIYLLSVGKSFRSHVNKQM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +      FAR++G          LE     + +  +I++  I  + E    L +  
Sbjct: 61  IMFDNE-----FARIKGKVISNSKQRNLEIILGSNFKNAKIDNQDIHKISEFVGLLNVVV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180
            +P    +  G    RRRF+D  +  I P +   +  +  L++ RN+ L     +     
Sbjct: 116 FIPDDLYLVKGNPSNRRRFIDLEISKISPIYVFNLSKYSNLLKERNKYLKILNKKNSSGD 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFD 237
            +   ++ Q+++L V++   R++ I+ L   +    QK    +   IKL  + FL    +
Sbjct: 176 EYLEVLDEQLSKLQVELIKKRLQFISRLDQKVSLIYQKIAQKDNEAIKLRYSCFLKDDLN 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                  E          + D    ++ IG H+ DL +   D      + S G+Q+ V++
Sbjct: 236 ------YENILNLYKKNHRRDIKYMQSHIGIHKDDLKIYMND-NDACLYASQGQQRTVVL 288

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + +A   LI    G  P+LLLD++ + LD+ ++N L  I+     Q F+T T     + 
Sbjct: 289 SLKIALIELIKEEIGEYPVLLLDDVLSELDKTRKNMLLDILNQK-IQTFITTTSIDDINH 347

Query: 358 -LNETAKFMRISNHQ 371
            + E AK + I + +
Sbjct: 348 QIIERAKKIYIESGK 362


>gi|149375633|ref|ZP_01893402.1| recombination protein F [Marinobacter algicola DG893]
 gi|149360035|gb|EDM48490.1| recombination protein F [Marinobacter algicola DG893]
          Length = 379

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 164/380 (43%), Gaps = 22/380 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L    FRN +   + F     +  G NG GKT++LEAI +L  GR FR + +  V
Sbjct: 1   MALVKLQSENFRNLSPAPVSFSPSINLLYGANGSGKTSVLEAIGYLGLGRSFRVSRHQAV 60

Query: 65  TRIGSPSFFSTFARVEGMEG--------LADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
              G           +GM G          +  + +          L+++   +R +  L
Sbjct: 61  VSHGQHKLTVFGGLDQGMSGAEQKPSSGELNHRVGISRDVTAKETTLRVDGEAVRNLSSL 120

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
            +HL +S + P +  I +G   +RR+FLD  VF ++P         +R+   RN++L  G
Sbjct: 121 ARHLPVSVIDPGVFDIVAGGPGKRRQFLDWAVFHVEPSFASVWQQCQRVTSQRNQILRNG 180

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK-LSLTGFLDGK 235
             D +     ++Q  EL  ++  AR E     +      + + + P +  L L  ++   
Sbjct: 181 RIDDALMKVWDSQYTELAERLTQARNETFRLFTKAFHSLLGEIDAPWVDGLKLDYYVGWD 240

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
             QS   +       L   R+ +     TL GP+R+D+ + Y  + +     S G+QK +
Sbjct: 241 ASQSLVEV-------LRSHREQEQKMGHTLYGPNRADIRLRYQGRPVAETF-SRGQQKTL 292

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           ++ + +A   ++S+  G     LLD+I+A LD   R  L + + ++  Q+F+T  +    
Sbjct: 293 VILMKIAQGMVLSD-LGKQVTFLLDDINAELDVVHRAMLAQKLHELRCQVFVTSIEAPRP 351

Query: 356 DSL----NETAKFMRISNHQ 371
           D L        +   + + +
Sbjct: 352 DELWRHTMPEYRLFHVEHGK 371


>gi|302535569|ref|ZP_07287911.1| recombination protein F [Streptomyces sp. C]
 gi|302444464|gb|EFL16280.1| recombination protein F [Streptomyces sp. C]
          Length = 378

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 100/384 (26%), Positives = 160/384 (41%), Gaps = 25/384 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   +      T FVG NG GKTN++EAI +L+     R +S A +
Sbjct: 1   MHVSHLSLADFRSYARAEVPLAPGVTAFVGPNGQGKTNLVEAIGYLATLGSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A  +G        ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRMGADRAVIRAAVTQGERQQL---VELELNPGRANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
             P    +  G   ERRRFLD +V A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARRHGG 176

Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233
              D S     +  +A  G ++   R+++I  L  L  +  ++       + L+      
Sbjct: 177 RSMDLSTLDVWDQHLARAGAELLAQRLDLIATLLPLADKAYEQLAPGGGPLALAYKSSAG 236

Query: 234 GKFDQSFCALKEEYAKKLFDG----RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
              D      +EE  + L       RK +     TL GPHR   ++          + S 
Sbjct: 237 DPVDNGAARTREELYEVLLATLSQVRKQEIERGVTLAGPHRD-DLLLRLGDLPAKGYASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT- 348
           GE     + + LA   L+ +  G  P+L+LD++ A LD  +R  L  +V   G Q+ +T 
Sbjct: 296 GESWSYALALRLASYELLRSE-GAEPVLILDDVFAELDARRRERLAELVAG-GEQVLVTA 353

Query: 349 GTDKSVFDSLNETAKFMRISNHQA 372
             D  V   L  T     +S  + 
Sbjct: 354 AVDDDVPGVL--TGTRFGVSGGEV 375


>gi|254393576|ref|ZP_05008709.1| RecF [Streptomyces clavuligerus ATCC 27064]
 gi|294813743|ref|ZP_06772386.1| DNA replication and repair protein recF [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442164|ref|ZP_08216898.1| recombination protein F [Streptomyces clavuligerus ATCC 27064]
 gi|197707196|gb|EDY53008.1| RecF [Streptomyces clavuligerus ATCC 27064]
 gi|294326342|gb|EFG07985.1| DNA replication and repair protein recF [Streptomyces clavuligerus
           ATCC 27064]
          Length = 381

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 95/390 (24%), Positives = 164/390 (42%), Gaps = 28/390 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + +      + FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYARVEVPLGPGVSSFVGANGQGKTNLVEAVGYLATLASHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       A  +G        I+LE    R+ R        +R  D L   +R   
Sbjct: 61  VRAGAQRAVIRAAVTQGDRSQL---IELELNPGRANRARINRSSQVRPRDAL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174
             P    +  G   +RRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGDRRRFLDELITARSPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176

Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGF 231
                D S     +  +A +G ++   R++++  L  L  +  +        ++L     
Sbjct: 177 SRSGADLSTLDVWDQHLARVGAELLARRLDLVATLRPLADKAYESLAPGGGPLELEYRSS 236

Query: 232 LDG-----KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                      +    L     + L + RK +     TL+GPHR +L++   +      +
Sbjct: 237 AGATAPPEDGAEGREELYGLLLEALGEARKQEIERGVTLVGPHRDELLLKLGELPAK-GY 295

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE     + + LA   L+ +  G  P+L+LD++ A LD  +R  L  +V   G Q+ 
Sbjct: 296 ASHGESWSYALALRLASYELLRSE-GHEPVLVLDDVFAELDAKRRERLAELVA-PGEQVL 353

Query: 347 MT-GTDKSVFDSLNETAKFMRISNHQALCI 375
           +T   D  V   L  +     +S  +   +
Sbjct: 354 VTAAVDDDVPQVL--SGARYAVSGGEVTRV 381


>gi|317495091|ref|ZP_07953462.1| DNA replication and repair protein RecF [Gemella moribillum M424]
 gi|316914798|gb|EFV36273.1| DNA replication and repair protein RecF [Gemella moribillum M424]
          Length = 380

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 83/381 (21%), Positives = 160/381 (41%), Gaps = 20/381 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ L +  FRNY SL +       IF GDN  GKTNI+E+I  LS G+ +R  S  + 
Sbjct: 1   MKIRELKLLYFRNYTSLNIATHPSLNIFFGDNANGKTNIVESIFCLSLGKSYRTKSDTEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +   +           + ++ +        +  +I  +    + E    L +  
Sbjct: 61  IMFGEDAAAMSCVL-----NKNNKNLDIMLGISNKGKSAKIAGIKKNKLTEFVGELNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P   +I  G    RR F++R  +     + +  + ++ L++ RN  L +   +     
Sbjct: 116 FSPEDLQIVKGSPSLRREFINREFYQFSRIYHKYHLMYQHLLKQRNSYLKDMKKNPKDEI 175

Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
             ++  ++ +Q+ ++ + I   RV  +  ++ L  E +   +  +  L +          
Sbjct: 176 SLTYLETLTSQLVKIAMYITRERVSFVKDIAKLAYENMLNISNGNEILEIKYKSSILDVL 235

Query: 239 SFCAL------KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
              ++      +E   + +      D M   T IGPH+ DL     +      + S G+Q
Sbjct: 236 GVSSVSDAKFSEENIVELMMKKSFDDIMRGNTKIGPHQDDLEFFINNLE-ARTYASQGQQ 294

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD- 351
           + +++ + L+    +   TG  PILLLD++ + LD++++  L   + D   Q F+T    
Sbjct: 295 RSIVLSLKLSEIHYLKQKTGDYPILLLDDVLSELDKNRQLKLLDAI-DENVQTFITTPSI 353

Query: 352 KSVFDSLNETAKFMRISNHQA 372
             + + L E AK  +I N   
Sbjct: 354 TDIKEDLLEKAKVFKIDNGNI 374


>gi|260590842|ref|ZP_05856300.1| RecF protein [Prevotella veroralis F0319]
 gi|260537193|gb|EEX19810.1| RecF protein [Prevotella veroralis F0319]
          Length = 368

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 160/375 (42%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N  +  L   A+   F+G NG GKTN+L+A+ +LS  R       ++V
Sbjct: 1   MQLNKLSIINYKNIEAATLDLSAKLNCFIGHNGEGKTNLLDAVYYLSFCRSAFNPKDSEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +  F               +   ++     + +  + N    + +      + + +
Sbjct: 61  MRHDADYFVLEGDYTTDGGDKEQVYCGMKRG---TKKHFKRNKKEYKRLSMHIGQVPLIF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P+   +  G S ERRR +D ++   D  +   +  + + ++ RN+LL  E   DS+  
Sbjct: 118 VSPADATLIDGGSEERRRLMDVVISQYDTPYIEDLNRYNKALQQRNKLLKQEEEPDSTLM 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E QMAE G  I   R   +  L+ +     Q       ++SL      +        
Sbjct: 178 ELLEMQMAEYGEAIYKKRAAFVEELTPVFQRIYQTICENREQVSLEYVSHCQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +      +   R  D +   +L G H+ DL++   D  I    GS G+ K  ++ + LA 
Sbjct: 230 RGSLLDVIRRDRAKDRIMGYSLHGIHKDDLVMKLGDYPIRRE-GSQGQNKTYVLALKLAQ 288

Query: 304 ARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361
              +  T+G   P+LLLD+I   LD  +   + R+V+ D   QIF+T T++   D + + 
Sbjct: 289 FDFLRRTSGNNTPLLLLDDIFDKLDSSRVEQIVRLVSGDDYGQIFITDTNRDHLDKILQG 348

Query: 362 A----KFMRISNHQA 372
           +    K   +   + 
Sbjct: 349 SSFSYKIFSVEGGEI 363


>gi|330718065|ref|ZP_08312665.1| DNA replication and repair protein RecF [Leuconostoc fallax KCTC
           3537]
          Length = 343

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 137/347 (39%), Gaps = 14/347 (4%)

Query: 33  VGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKL 92
           +G+N  GKTN+LE+I  L+  R  R ++  D+ +            + G        + L
Sbjct: 1   MGENAQGKTNLLESIYVLALARSHRTSNDKDLIQWQQKE-----TTISGRVHRRTGDLPL 55

Query: 93  ETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152
                   +  ++N +    + +    L +    P    +  G    RRRF+D     ++
Sbjct: 56  SLNFSNKGKKARVNHLEQSKLSQYVGQLNVILFAPEDLELVKGAPTIRRRFIDMEFGQMN 115

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINAL 208
           P +      ++++++ RN  L         D+ +   +  Q+ + G ++ +AR   +  L
Sbjct: 116 PLYLYHSAQYKKILKNRNAYLKRLQLGQTKDTVFLDVLTEQLVDTGSQVILARQAFLKNL 175

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLI 266
                    + +    KL+L         +  +   +K ++ + L    + +     T +
Sbjct: 176 ELAAQPIHTEISNQQEKLTLKYQSSVDLSENTNIDQIKSQFLESLRQQYQREKSQGSTAL 235

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
           GPHR D+      K +    GS G+Q+   + + LA   L+   TG  P+LLLD++ + L
Sbjct: 236 GPHRDDVQFWVNGKDV-ATFGSQGQQRTAALSVKLAEIHLMQQETGEYPVLLLDDVLSEL 294

Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLNETAKFMRISNHQA 372
           D  ++  L   + D   Q F+T      V   L    K   +   Q 
Sbjct: 295 DASRQTHLLLAIQDK-VQTFITAPSLSDVAKQLIHAPKVFHVKQGQI 340


>gi|332827263|gb|EGK00033.1| hypothetical protein HMPREF9455_03622 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 368

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 153/376 (40%), Gaps = 19/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L+I  ++N     L    +   F+G NG+GKTN+L+AI +LS  +       +  
Sbjct: 1   MILERLSILNYKNIEQAELTLSPKINCFLGSNGMGKTNLLDAIYYLSFSKSHNNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F       E  +   +    L     +  +  + N      + +    L +  
Sbjct: 61  ILHDAE-FAVIQGWYEIGDKQEEFFCSLR---RKQKKQFKRNKKEYERLSDHIGLLPLVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + PS   + +G S ERR+F+D  +   D  +   +I + + ++ RN LL  +   D +  
Sbjct: 117 VSPSDTELINGGSDERRKFMDLFLSQFDKEYLYSLIRYNKALQQRNALLKVDAPVDDTLL 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+A  G  I   R + I+       ++       + K+ L    +  F+      
Sbjct: 177 GLWDEQLANEGKIIYRKRKDFIDKFIPTFQKFYDFICSSNEKVELKY--ESHFENP---- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             ++ + L   R+ D +   T  G H+ DL +     +I    GS G+ K  +V + LA 
Sbjct: 231 --DFPELLKSRRQRDKILGYTTAGIHKDDLDMQMDGYSIKRV-GSQGQNKTYVVALKLAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL---- 358
              +   T   P+LLLD+I   LD  +   + ++V D    QIF+T T++   D +    
Sbjct: 288 FDFLHKATETTPVLLLDDIFDKLDSSRVEQIIKLVLDKDFGQIFVTDTNREHLDEILSRT 347

Query: 359 NETAKFMRISNHQALC 374
           N       +   + + 
Sbjct: 348 NSNYHLYEVEKGEVIQ 363


>gi|309973509|gb|ADO96710.1| DNA replication and repair protein RecF [Haemophilus influenzae
           R2846]
          Length = 359

 Score =  298 bits (763), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 156/367 (42%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++     + +       
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCVLRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
             +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T   +     +  E  K
Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEIQVENKK 346

Query: 364 FMRISNH 370
              + N 
Sbjct: 347 MFSVHNG 353


>gi|68249576|ref|YP_248688.1| recombination protein F [Haemophilus influenzae 86-028NP]
 gi|145632377|ref|ZP_01788112.1| recombination protein F [Haemophilus influenzae 3655]
 gi|145640665|ref|ZP_01796248.1| recombination protein F [Haemophilus influenzae R3021]
 gi|81335995|sp|Q4QLR9|RECF_HAEI8 RecName: Full=DNA replication and repair protein recF
 gi|68057775|gb|AAX88028.1| DNA replication and repair protein RecF [Haemophilus influenzae
           86-028NP]
 gi|144987284|gb|EDJ93814.1| recombination protein F [Haemophilus influenzae 3655]
 gi|145274591|gb|EDK14454.1| recombination protein F [Haemophilus influenzae 22.4-21]
 gi|301169717|emb|CBW29318.1| gap repair protein [Haemophilus influenzae 10810]
          Length = 359

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 158/367 (43%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   AL   I +  Q    P ++++++     + +       
Sbjct: 176 IWDVELAKLAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCVLRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  K
Sbjct: 287 EHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKK 346

Query: 364 FMRISNH 370
              + N 
Sbjct: 347 MFSVHNG 353


>gi|291457886|ref|ZP_06597276.1| RecF protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419430|gb|EFE93149.1| RecF protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 379

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 157/371 (42%), Gaps = 17/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  FRNY +L L       I  G+N  GKTN+LEAI      + +R     D+
Sbjct: 1   MQIDSLELQNFRNYENLSLHLCRGSNILYGENAQGKTNLLEAIFMACTAKSYRFTKDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G         ++   +G A   I +  +     + + I+++ IR   EL     I  
Sbjct: 61  IRFGEEEA---HIKLILRKGSAPYRIDMHLK-RNQSKGIAIDEIPIRRASELFGIANIVC 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +     + RRRFLD  +  ++  + + +  + R++  RNRLL +  F +    
Sbjct: 117 FSPEDLSLIKDGPVVRRRFLDLELCQLNRGYLQELGRYGRILNQRNRLLRDIPFKAGLLD 176

Query: 185 ---SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + Q+   G+ +   R   +  LS +I E   + +    K+ +    + K      
Sbjct: 177 TLSVWDEQLLSSGIALIEIRSAFMKRLSPIISEIHGRLSGGREKIEVDYEPNVK------ 230

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
              E + KKL   R+ +     +L GPHR D+      + I    GS G+Q+   + + L
Sbjct: 231 --AENFRKKLSLLRESELKQHLSLAGPHRDDISFRIDGRDIR-KFGSQGQQRTAALALKL 287

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           +   L+       PILLLD++ + LD  ++N L +I+ D  + I  TG D  +       
Sbjct: 288 SEIELVREMIDDTPILLLDDVLSELDSARQNYLLKILKDTQNIISCTGLDDFLSKRFPID 347

Query: 362 AKFMRISNHQA 372
            +  ++   + 
Sbjct: 348 -QLYQVEGGKI 357


>gi|120596836|ref|YP_961410.1| recombination protein F [Shewanella sp. W3-18-1]
 gi|166221867|sp|A1RDX9|RECF_SHESW RecName: Full=DNA replication and repair protein recF
 gi|120556929|gb|ABM22856.1| DNA replication and repair protein RecF [Shewanella sp. W3-18-1]
 gi|319424420|gb|ADV52494.1| DNA replication and repair protein RecF [Shewanella putrefaciens
           200]
          Length = 360

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 163/373 (43%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI  FRN    +L+      +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLTRLNIEAFRNIQFAQLIPAPGINVIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +    + FA +    G + I ++     +  V+   I+   ++ +  L + L I  
Sbjct: 61  INNDNDK-LTLFATLNLARGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  DP+      +  R+++ RN+LL  G   +    
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHADPQFYGAWTNVRRVLKQRNQLLRNGAVYTH-IQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +      ++   R   +++L+ L+   +  E  P + + ++              K
Sbjct: 176 FWDQEFVRYAEQVTEIRNHYVDSLNGLLKGII-GEFLPSVDVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++A+ L +    D  +  T+ GPH++DL +   +     A  S G+ K+++  + +A  
Sbjct: 228 TDFAELLENQYSRDLATGHTVSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA- 362
           +L+        I L+D++ + LD   R  L + +TD G+Q+F+T  D +   DSL+    
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPN 346

Query: 363 KFMRISNHQALCI 375
           +   +   +   +
Sbjct: 347 RMFHVEQGRVTVV 359


>gi|325270881|ref|ZP_08137468.1| recombination protein F [Prevotella multiformis DSM 16608]
 gi|324986678|gb|EGC18674.1| recombination protein F [Prevotella multiformis DSM 16608]
          Length = 368

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 163/377 (43%), Gaps = 23/377 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N  +  L   A+   F+G NG GKTN+L+A+ +LS  +       ++V
Sbjct: 1   MQLDKLSIINYKNIQAATLNLSARLNCFIGRNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R  S  F     +    G +G     +K  T+     +  + N    + + +    + +
Sbjct: 61  IRHDSDYFVLEGDYTTDAGEQGQVYCGMKRGTK-----KHFKWNRKEYKRLSQHIGKVPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSS 181
            ++ P+   +  G S ERRR +D ++   D  +   +  + + ++ RN LL  EG  D +
Sbjct: 116 IFVSPADAALIEGGSEERRRLMDVVISQYDTPYIEALGRYNKALQQRNSLLKQEGEPDPT 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
               +E QMAE G  +   R   +  L+ +     Q       ++SL      +      
Sbjct: 176 LMELLEMQMAEHGETLYRKRKAFVQELTPVFQRIYQTICCNREQVSLEYVSHCQ------ 229

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
             +      +   R  D +   +L G H+ DL++      +    GS G+ K  ++ + L
Sbjct: 230 --RGSLLDVIQRDRTKDRIMGFSLHGTHKDDLVMKLGGYPMKRE-GSQGQNKTYVLALKL 286

Query: 302 AHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLN 359
           A    +  T+G   P+LLLD+I   LD  +   + R+V+ D   QIF+T T++   D + 
Sbjct: 287 AQFDFLHRTSGNNTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFGQIFITDTNRDHLDRIL 346

Query: 360 E----TAKFMRISNHQA 372
           +      K   + N + 
Sbjct: 347 QGSGFDYKLFSVENGEI 363


>gi|56695076|ref|YP_165423.1| recombination protein F [Ruegeria pomeroyi DSS-3]
 gi|56676813|gb|AAV93479.1| DNA replication and repair protein RecF [Ruegeria pomeroyi DSS-3]
          Length = 366

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 137/361 (37%), Positives = 198/361 (54%), Gaps = 11/361 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + IS FR++  LRL  D +     G NG GKTNILEA+S  SPGRG RRAS A++
Sbjct: 3   LALTAITISHFRSHRLLRLSLDERPVAIHGPNGAGKTNILEAVSMFSPGRGMRRASAAEM 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           TR      +   A +       +I    E     + R ++I+D     V  L + +R+ W
Sbjct: 63  TRRPEVLGWKLSAELVAGHQRHEIETWSE---GGAARQVRIDDKAASQVA-LGRLVRMVW 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVPSMDR++      RRRFLDRM  + +P H   ++ +E+ MR RNRLL E   D+ W  
Sbjct: 119 LVPSMDRLWIEGPEGRRRFLDRMTMSFEPDHAEAVLVYEKAMRERNRLLREQVRDAHWYL 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++E QMA  G +I+ AR       +    +   + +FP  +L L    +G   +S   L+
Sbjct: 179 ALETQMAAAGHRIHAARQS--TLTALAAAQTQAETSFPTAELELI-QTEGALPESEGDLR 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E     L + R  D  + RTL+GPHRSDL   Y  K +  +  STGEQK +LV + LA+A
Sbjct: 236 E----ALAESRFRDLAAGRTLVGPHRSDLYGVYAAKGVPASDCSTGEQKALLVSLILANA 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++   G  P+LLLDEI+AHLD  +R AL+  +  +G+Q +MTGT   +F  L   A+ 
Sbjct: 292 RALARQVGAPPVLLLDEIAAHLDAGRRAALYDEICALGAQAWMTGTGPELFSELGARAQT 351

Query: 365 M 365
           +
Sbjct: 352 I 352


>gi|89898370|ref|YP_515480.1| recombination protein F [Chlamydophila felis Fe/C-56]
 gi|123483260|sp|Q254F3|RECF_CHLFF RecName: Full=DNA replication and repair protein recF
 gi|89331742|dbj|BAE81335.1| DNA replication and repair protein [Chlamydophila felis Fe/C-56]
          Length = 367

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 157/368 (42%), Gaps = 10/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRNY   ++          G+N  GKTN+LEA+  LS GR FR +   + 
Sbjct: 1   MNILSLRLKNFRNYKEAKISLSPNMNYIFGENAQGKTNLLEALYVLSLGRSFRTSHLTEA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              GS  FF     +E        S KL    D+  + +  +   I+ + +L   + I  
Sbjct: 61  ISFGSAYFF-----LEMTCEKDGFSHKLSIYVDKHGKKILSDQSPIKTLSQLIGMVPIVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  + SG   +RR FL+ ++   DP+++  +  + R +  RN LL       S  S
Sbjct: 116 FSSKDRLLISGSPSDRRLFLNLLLSQCDPQYKHTLSYYHRALLQRNSLLKTKQI--STLS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+A LG  + ++R      L+ L+ +        HI++     L  +   S  ++ 
Sbjct: 174 VWDEQLATLGAYLTLSRFTCCEQLNQLVQKLWNNSLSEHIRIKFKSSLIKQDKLSKESII 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           EE  K+L      D     T +GPHR D  +   D  ++    S G++  +L  + LA  
Sbjct: 234 EELRKQLTSSLHRDLELGSTSVGPHREDFTLMINDLPVS-QFSSEGQKHSLLAILRLAEC 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             I N     P+  +D+I + LD  + + L  +   +G Q  MT T      +L++ ++ 
Sbjct: 293 LYIKNIHNVCPLFCMDDIHSGLDNHRISQLLDLAPTLG-QTLMTSTHLPH-QTLSKNSRI 350

Query: 365 MRISNHQA 372
             ++  Q 
Sbjct: 351 FLVNQAQV 358


>gi|317481502|ref|ZP_07940567.1| DNA replication and repair protein RecF [Bacteroides sp. 4_1_36]
 gi|316902348|gb|EFV24237.1| DNA replication and repair protein RecF [Bacteroides sp. 4_1_36]
          Length = 370

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 153/375 (40%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F  +   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R  +  FF      E  +G   +I   ++ R  +  +    N      + +    L + 
Sbjct: 61  IRHDAD-FFVIQGFYEAADGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   +   
Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I     +   +    +    K+ L+     +       
Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFIREFIPIFQSFYSFISQDREKVGLSYDSHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L + R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA
Sbjct: 231 --ASLLEVLKESRVRDQIMGYSLRGVHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDSFGQIFITDTNREHLDRILHK 347

Query: 359 -NETAKFMRISNHQA 372
                K  R+     
Sbjct: 348 VGSDYKMFRVEQGTV 362


>gi|19551253|ref|NP_599255.1| recombination protein F [Corynebacterium glutamicum ATCC 13032]
 gi|62388896|ref|YP_224298.1| recombination protein F [Corynebacterium glutamicum ATCC 13032]
 gi|51316227|sp|Q6M8X7|RECF_CORGL RecName: Full=DNA replication and repair protein recF
 gi|21322768|dbj|BAB97397.1| Recombinational DNA repair ATPase [Corynebacterium glutamicum ATCC
           13032]
 gi|41324229|emb|CAF18569.1| DNA REPAIR AND GENETIC RECOMBINATION PROTEIN [Corynebacterium
           glutamicum ATCC 13032]
          Length = 394

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/388 (25%), Positives = 172/388 (44%), Gaps = 31/388 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L + ++R++  L++  +   T+F+G NG GKTNI+EAI +L+     R +S A +
Sbjct: 1   MHIRSLELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLSSHRVSSDAPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R  + +   S  A  +G E  A + IK       +     +N   +R   EL   ++  
Sbjct: 61  VRAHAENARVSAVAVNQGRELAAHLLIK-----PHAANQASLNRTKVRTPRELLGVVKTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174
              P    +  G   ERRR+LD ++    PR      D++++++ RN LL          
Sbjct: 116 LFAPEDLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQRNALLKTATIALRRG 175

Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV---QKENFPHI--- 224
               EG    S   + + Q+A LG ++  AR  ++N L   I E       E+ P     
Sbjct: 176 YGTEEGAAALSTLDTWDGQLARLGAEVMAARFALLNELGPKIYEAYTTIAPESRPAAVNY 235

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
           K ++   L    +     ++     +L   R+ +     +L+GPHR D+ +   D+    
Sbjct: 236 KTTIDQGLSQFSEFDAGIIEATLLTELAAKRQREIERGSSLVGPHRDDVDLMLGDQPAK- 294

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
              S GE     + + +A   L+  + G  PIL+LD++ + LD  +R  L  I  ++  Q
Sbjct: 295 GFASHGETWSFALSLRIAEFNLLK-SDGTDPILILDDVFSELDAGRREKLVGIAQEVE-Q 352

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQA 372
           + +T    +V D L E  K +  + H  
Sbjct: 353 VLITA---AVHDDLPENLKKVLTAQHTV 377


>gi|261346740|ref|ZP_05974384.1| DNA replication and repair protein RecF [Providencia rustigianii
           DSM 4541]
 gi|282565140|gb|EFB70675.1| DNA replication and repair protein RecF [Providencia rustigianii
           DSM 4541]
          Length = 364

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 151/369 (40%), Gaps = 12/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN     L         +G NG GKT+ILEAI  L  GR FR      V
Sbjct: 1   MILSRLLIRDFRNIEDADLSLATGFNFLIGPNGSGKTSILEAIYTLGHGRAFRSIQANRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F               +S+ L    +   + ++I+      + EL K L +  
Sbjct: 61  IRHDQEQFILHGKLGHLDSDRKALSLGLSKNREGDSK-VRIDGTDGHKIAELAKLLPMQL 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR F+D   F  +        D +RL++ RN  L +         
Sbjct: 120 ITPEGFTLLNGGPKYRRAFIDWGCFHNEALFFSTWSDLKRLLKQRNAALRQ-VTRYEQIR 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+A +  +I+  R E I  ++  I +  Q +  P   LS++       +       
Sbjct: 179 HWDQQLAPISEQISQWRGEYIAGIAENIEQTCQ-QFLPEFSLSVSFQRGWDKEI------ 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y+++L    + D     T  GPH++DL +   D        S G+ K+++  + LA  
Sbjct: 232 -DYSEQLERQFERDRALTYTSSGPHKADLRIR-ADGIPVEDMLSRGQLKLLMCALRLAQG 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             ++  +G   + LLD+ ++ LD  +R  L   +    +Q+F++  T   V D ++  +K
Sbjct: 290 EYLTQQSGQRCLYLLDDFASELDSGRRQLLATRLKATQAQVFVSAITPAQVNDMIDANSK 349

Query: 364 FMRISNHQA 372
              +   + 
Sbjct: 350 MFSVEQGKI 358


>gi|209966327|ref|YP_002299242.1| recombination protein F [Rhodospirillum centenum SW]
 gi|209959793|gb|ACJ00430.1| DNA replication and repair protein RecF, putative [Rhodospirillum
           centenum SW]
          Length = 377

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 145/372 (38%), Positives = 210/372 (56%), Gaps = 10/372 (2%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
             L ++ FR+Y + RL  DA+  +  G NG GKTN+LEA+SFL+PGRG RRA  A++ R 
Sbjct: 2   TRLTVTRFRSYLTARLDCDARPVVLTGPNGAGKTNLLEAVSFLAPGRGLRRARLAEIERT 61

Query: 68  G-----SPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHL 120
           G     +   ++  A +E   G  +I    +     +   R +QI+    +    L +H+
Sbjct: 62  GPAEGWAGPGWAVAATLETPAGPVEIGTGRDPAAGPESERRLVQIDGRAAKGQIALARHV 121

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            + WL P MDR+F   +  RRRFLDR+VF  DP H  R+  +E  +R R RLL EG  D 
Sbjct: 122 AVVWLTPQMDRLFLEAASGRRRFLDRLVFGFDPAHAGRLSQYEAALRERARLLREGPADP 181

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W +++E +MA LGV +  AR +M+  L++     V    FP   +++ G +D       
Sbjct: 182 AWLTTLEDRMATLGVAVAAARADMVARLAAAAALGV--GPFPAPGMAMAGGVDDLVAAGP 239

Query: 241 C-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             A ++   + L D R+ D+ +    IGPHRSDL V    K +    GSTGEQK +L+ I
Sbjct: 240 ALAAEDALRRTLRDSRRRDAEAGGAAIGPHRSDLCVTCRAKEMPAERGSTGEQKALLIAI 299

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA+ARL+   TG AP+LLLDE++AHLD D+R ALF  +   GSQ +MTGTD  VF  L 
Sbjct: 300 VLANARLMKAETGTAPLLLLDEVAAHLDADRRAALFAEILATGSQAWMTGTDAQVFAELG 359

Query: 360 ETAKFMRISNHQ 371
             A  +R+ + +
Sbjct: 360 AAASHVRVEDSR 371


>gi|255007766|ref|ZP_05279892.1| putative DNA replication and repair protein [Bacteroides fragilis
           3_1_12]
 gi|313145469|ref|ZP_07807662.1| DNA replication and repair protein recF [Bacteroides fragilis
           3_1_12]
 gi|313134236|gb|EFR51596.1| DNA replication and repair protein recF [Bacteroides fragilis
           3_1_12]
          Length = 370

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 156/375 (41%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E M+G   +I   ++ R  +  +    N      + +    + + 
Sbjct: 61  IRHEQD-FFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKR---NKKEYSRLSDHIGFIPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   +   
Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I+    +   +    +    ++ LT     +       
Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHARG------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L + R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA
Sbjct: 231 --ASLLEVLKESRVRDKIMGYSLRGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILYK 347

Query: 359 -NETAKFMRISNHQA 372
                K  R+ N   
Sbjct: 348 VGSDYKMFRVENGAI 362


>gi|85374625|ref|YP_458687.1| recombination protein F [Erythrobacter litoralis HTCC2594]
 gi|84787708|gb|ABC63890.1| recombinational DNA repair ATPase [Erythrobacter litoralis
           HTCC2594]
          Length = 361

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 134/368 (36%), Positives = 196/368 (53%), Gaps = 14/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + +S  RN+A  RL   A+  + VG+NG GKTN+LEAIS L+PGRG RRA+  D+
Sbjct: 1   MALDRITLSNLRNHAETRLQGTARFNLLVGENGAGKTNVLEAISLLAPGRGLRRAALPDI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            R G    F+  A +   +G   + +       R   R +++N      V  L + L I 
Sbjct: 61  ARAGGGGGFTVGASLTPGDGGEPVQLGTMVDPARPGRRRVRVNGAEASAVS-LGEWLAIG 119

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSW 182
           WL P+MD IF G + +RRRF+DRM  A+DP H R    +E ++R RNRLL  E   D +W
Sbjct: 120 WLTPAMDGIFMGPAGDRRRFVDRMALALDPLHARHASRYENVLRERNRLLGDEREPDPTW 179

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              IEAQMA+ G  +  +R  ++  L   +  +  +   P  +  L    +  F++    
Sbjct: 180 LDGIEAQMAKHGSALAQSRARLVGVLVETLASHPDE---PFARPLLAILTESPFEE---- 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E     L   R  D  + RTLIGPHR DL V    K    A  STGEQK +L+ I LA
Sbjct: 233 --EALRVALRANRGRDRRAGRTLIGPHRDDLTVTMAGKDTPAASCSTGEQKAMLIAITLA 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           H  L +   G   ++LLDE++AH+D  +R ALF  + + G+Q++MTGT+ + F ++   A
Sbjct: 291 HGELAAR--GRPGVMLLDEVAAHIDPVRREALFERLRETGAQVWMTGTELAPFAAIEAEA 348

Query: 363 KFMRISNH 370
              R+S  
Sbjct: 349 AVWRVSGG 356


>gi|146280400|ref|YP_001170553.1| recombination protein F [Pseudomonas stutzeri A1501]
 gi|166220726|sp|A4VFG0|RECF_PSEU5 RecName: Full=DNA replication and repair protein recF
 gi|145568605|gb|ABP77711.1| DNA replication and repair protein RecF [Pseudomonas stutzeri
           A1501]
          Length = 370

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 158/374 (42%), Gaps = 15/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+++  RN   + L    +  I  GDNG GKT++LEAI  L   R FR      V
Sbjct: 1   MSLSRLSVTGVRNLHPVTLSPSPRINILFGDNGSGKTSLLEAIHLLGLARSFRSIRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P+  + F +VE  +  +  ++ +       VR ++I+   +R   EL   L +  
Sbjct: 61  ITYEQPAC-TVFGQVELPDQHSR-ALGVSRDRSGEVR-IRIDGQSVRSAAELADTLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P   R+  G    RR+FLD  VF ++ R        ++ +R RN  L  G  DS+  +
Sbjct: 118 INPDSFRLLEGAPKLRRQFLDWGVFHVEHRFMSAWQRLQQALRQRNSWLRHGTLDSASDA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +   +++    +I+  R   I AL  +  E   K       L+L+ +     D+    + 
Sbjct: 178 AWSRELSLASDEIDGYRRAYIQALKPVF-ETTLKALLDLDGLTLSYYRGWDKDRPLVDV- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L    + D     T  GP R+DL +            S G+QK+V+  + +A  
Sbjct: 236 ------LASSLERDRAMGHTQSGPQRADLRLKVGSHNAAEVL-SRGQQKLVVCALRIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNE--T 361
            L+S       I L+D++ + LD   R AL R++  +  Q+F+T  D +V      E   
Sbjct: 289 HLVSEAKRGQCIYLVDDLPSELDAQHRLALCRLLEQLNCQVFITCVDSTVLQEGWGEQTP 348

Query: 362 AKFMRISNHQALCI 375
                + + Q   +
Sbjct: 349 VSMFHVEHGQITQL 362


>gi|317503542|ref|ZP_07961566.1| recombination protein F [Prevotella salivae DSM 15606]
 gi|315665354|gb|EFV04997.1| recombination protein F [Prevotella salivae DSM 15606]
          Length = 366

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 151/374 (40%), Gaps = 18/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N     ++  ++   F+G NGVGKTN+L+A+ +LS  R       A V
Sbjct: 1   MILKRLSVINYKNIREATILLSSKLNCFIGSNGVGKTNVLDAVHYLSFCRSAFNPIDAQV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  FF    +    EG  +       R  +  +  + N    R + +    + + +
Sbjct: 61  ITHNQD-FFVLDGKYSSDEGDEEQIYCGMKRGTK--KHFKRNKKEYRRLSQHIGLIPLVF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P+   +  G S ERRR LD ++   D  +   +  + + ++ RN LL  E   D +  
Sbjct: 118 ASPADSILIEGGSEERRRLLDVVISQYDHAYIEALSAYNKALQQRNALLKMEEEPDKALL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E QMA  G  I   R   +  L  +  +     +  H  ++L     G+        
Sbjct: 178 EIWEEQMALNGEIIYQKRNSFVERLVPVFQDIYTHISGGHETVALNYVSHGQRGP----- 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  +   R  D     +L G HR DL +      +    GS G+ K   + + LA 
Sbjct: 233 ---LLDTIQRDRHRDRAVGYSLHGVHRDDLEMLLDGYQMKRE-GSQGQHKTYALALKLAQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSLNETA 362
              +  T+   P+LLLD+I   LD ++   + ++V  D   QIF+T T++   D +    
Sbjct: 289 FDFLRRTSNNTPLLLLDDIFDKLDANRVEKIVQLVGGDEFGQIFITDTNRDHLDQILARG 348

Query: 363 ----KFMRISNHQA 372
               K   + N + 
Sbjct: 349 DFDYKLFSVDNGEI 362


>gi|46447340|ref|YP_008705.1| putative DNA replication and repair protein recF [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|51316228|sp|Q6MAG9|RECF_PARUW RecName: Full=DNA replication and repair protein recF
 gi|46400981|emb|CAF24430.1| putative DNA replication and repair protein recF [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 359

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 93/364 (25%), Positives = 155/364 (42%), Gaps = 10/364 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRNY    L F  Q  +  G N  GKT +LEAI  L  GR FR + Y D+
Sbjct: 1   MTLRSLYLQHFRNYEEAYLEFSPQFNLICGPNAKGKTTLLEAIHCLMIGRSFRTSHYPDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    SFF     +E       I   L+     + R +  N   +  +  L   +    
Sbjct: 61  IQQQFESFF-----LEAQFYKHGIEQTLKFGFHTTDRKIIYNSTPLATLSNLLGLIPGVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P   ++  G    RR+FLD  +  +DP +   +  + R ++ RN LL      S    
Sbjct: 116 ITPDDVQLVKGSPQLRRQFLDIQIAQVDPLYVHHLNRYGRALKQRNHLLKMKQQIS--ID 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           S E +M      +   R + I  L +L  +Y    +  +  L+L        + S   +K
Sbjct: 174 SWEQEMTHSAAYLIQQRYQTITHLQNLAQKYYHLLSGENDLLTLEYRSIANSNLSIDEIK 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +   K+L   R+ +     TL GPH+ DL V    + I     S G+Q+  +  +  A  
Sbjct: 234 KLLVKQLCKNRQREMQIGYTLSGPHKDDLFVAIGGRDIRY-FASEGQQRSCVNALHFAEW 292

Query: 305 -RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
            RL     G  P+ ++D+I   LD ++++ L   +  +G Q+F+T TD    D ++   K
Sbjct: 293 NRLHQRGDGDFPLFMIDDIGMSLDSNRKDRLVEQLQSVG-QVFLTTTDPKFLDHIDADKK 351

Query: 364 FMRI 367
              +
Sbjct: 352 IFTL 355


>gi|223940285|ref|ZP_03632143.1| DNA replication and repair protein RecF [bacterium Ellin514]
 gi|223891052|gb|EEF57555.1| DNA replication and repair protein RecF [bacterium Ellin514]
          Length = 361

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 98/369 (26%), Positives = 169/369 (45%), Gaps = 19/369 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRNY  L + F     + +GDN  GKTNILEAI  ++  R FR    + +
Sbjct: 1   MHLAHLRLRDFRNYPRLDVDFAPGFQVLLGDNAQGKTNILEAIYLMATLRSFRGVGGSQM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G   +F     V    G  D  IK+      + R L +++  IR + +    +R+  
Sbjct: 61  VRHGQKGYFVGGKVV----GQGDHEIKMYWSP--AERKLSLDNQPIRKLADYFGAIRVVI 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                 ++  G S  RRRF+D ++    P +   +  +   +R RN LL +   D S   
Sbjct: 115 FCTEDLQLVKGTSRARRRFVDLLLSQTHPTYLPLLQRYASALRSRNALLKQRVQDESALE 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           S  A++ +LG  +   R E+I  LS L     ++ +    +L L             ++K
Sbjct: 175 SFTAELVKLGNDLIRMRHELIPKLSPLARLAYRRISNDAEELRLEYQP---------SVK 225

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +++A +L   R  +   R TLIGPHR ++ +   D++     GS G+++ + + + +A A
Sbjct: 226 KDFAVELAQTRARERTYRSTLIGPHRDEVQLLLNDRS-AAQFGSEGQKRTLAIALKMAQA 284

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNA---LFRIVTDIGSQIFMTGTDKSVFDSLNET 361
             ++   G APILL+D+I   LD  +R+    L         Q+FMT T+++    L   
Sbjct: 285 EYLTGLHGSAPILLIDDIMGELDAKRRSGLLPLLERAHHTRGQVFMTCTEENWPRELGRD 344

Query: 362 AKFMRISNH 370
                + + 
Sbjct: 345 LHRWEVRSG 353


>gi|225181145|ref|ZP_03734591.1| DNA replication and repair protein RecF [Dethiobacter alkaliphilus
           AHT 1]
 gi|225168114|gb|EEG76919.1| DNA replication and repair protein RecF [Dethiobacter alkaliphilus
           AHT 1]
          Length = 369

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 163/375 (43%), Gaps = 12/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + +  +RNY+SL L  +    +  G N  GKTN+LE+++F++ GR FR  +  ++
Sbjct: 1   MRLETIELRNYRNYSSLSLELNPNINLLFGSNAQGKTNLLESVAFIAAGRSFRTRNEGEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +  +  ARV    G   + +  +       +   +N + +         L    
Sbjct: 61  ILWGENNC-TASARVCNRMGRETLKVSFDAGSRN--KIFSVNGLTMNR-SNYAGRLVTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SS 181
             P    I  G    RR+F D  +  I P +   +   ++++R RN LL +       S 
Sbjct: 117 FTPEDLSIVKGSPAVRRKFFDDEISKISPVYEYELGRLQQIIRQRNNLLKKFRQKVLGSQ 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
             +S   Q+A L  KI I RV  I  +  L     +        L +        D    
Sbjct: 177 ELASWNEQLAILSAKILIKRVTAIRRIGLLARLSHRNLTGRDESLEILYQSFLPLDDGIL 236

Query: 242 A---LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +++     L + +  ++   +TL+GPHR D++ +   +   + + S G+Q+ +++ 
Sbjct: 237 DAQVIQDALLAGLEEKKHEEARLGQTLLGPHRDDIVFNINGRNARL-YASQGQQRTLVLA 295

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA    I   TG  P+LL D++ + LDE +R  L   + D   Q F+TGT+       
Sbjct: 296 LKLAELEFIKGETGEYPVLLFDDVFSELDERRRRLLVETI-DGRIQTFITGTEAEKLRQF 354

Query: 359 NETAKFMRISNHQAL 373
            E+ K  ++   + +
Sbjct: 355 KESGKMFKVREGEVV 369


>gi|327478615|gb|AEA81925.1| recombination protein F [Pseudomonas stutzeri DSM 4166]
          Length = 370

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 157/374 (41%), Gaps = 15/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+++  RN   + L    +  I  GDNG GKT++LEAI  L   R FR      V
Sbjct: 1   MSLSRLSVTGVRNLHPVTLTPSPRINILFGDNGSGKTSLLEAIHLLGLARSFRSIRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P+  + F +VE  +  +  ++ +       VR ++I+   +R   EL   L +  
Sbjct: 61  ITYEQPAC-TVFGQVELPDQHSR-ALGVSRDRSGEVR-IRIDGQSVRSAAELADTLPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P   R+  G    RR+FLD  VF ++ R        ++ +R RN  L  G  D +  +
Sbjct: 118 INPDSFRLLEGAPKLRRQFLDWGVFHVEHRFMSAWQRLQQALRQRNSWLRHGTLDGASDA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +   +++    +I+  R   I AL  +  E   K       L+L+ +     D+    + 
Sbjct: 178 AWSRELSLASDEIDGYRRAYIQALKPVF-ETTLKALLDMDGLTLSYYRGWDKDRPLVDV- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L    + D     T  GP R+DL +            S G+QK+V+  + +A  
Sbjct: 236 ------LASSLERDRAMGHTQSGPQRADLRLKVGSHNAAEVL-SRGQQKLVVCALRIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNE--T 361
            L+S       I L+D++ + LD   R AL R++  +  Q+F+T  D +V      E   
Sbjct: 289 HLVSEAKRGQCIYLVDDLPSELDAQHRLALCRLLEQLNCQVFITCVDSTVLQEGWGELTP 348

Query: 362 AKFMRISNHQALCI 375
                + + Q   +
Sbjct: 349 VSMFHVEHGQITQL 362


>gi|290968151|ref|ZP_06559696.1| putative recombination protein F [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781826|gb|EFD94409.1| putative recombination protein F [Megasphaera genomosp. type_1 str.
           28L]
          Length = 367

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 93/372 (25%), Positives = 164/372 (44%), Gaps = 10/372 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  + +  FRNY ++ L F     IF G+NG GKTN+LE++     G+ +R  +  ++
Sbjct: 1   MKITGVRLFNFRNYKNMELNFHNMIHIFYGNNGQGKTNLLESLYIAGIGKTYRGIADREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R       S   R         + I L      S + L IN+    +  E    +    
Sbjct: 61  IRWEQEEG-SIIVRFLRNHVEQQVKIILSRV---SSKQLWINETKT-IGREFFGSIPEIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
             P   ++  G    RR+F+D  +  ++  + R ++ +  ++  RN LL E  +D +   
Sbjct: 116 FSPDDLQLIKGAPSLRRKFMDMELSQVNRMYYRCLLQYNHILAQRNALLKEVRYDKNISF 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           +  + Q+A L   +   R+EM+  ++ L  +  ++       L +        D+    L
Sbjct: 176 AEWDTQLAVLAADMVKKRLEMLKKINVLADKIHKELTQGKESLHVYYKQPYNQDRHTVIL 235

Query: 244 KE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +  +YA+ L +    DS    T IGPHR D       K     + S G+Q+  ++ + LA
Sbjct: 236 QASQYARLLQENIAADSYKNATSIGPHRDDFTFCIEGKEAK-KYASQGQQRTAILSLKLA 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
               + +  G  PILLLD++ + LD  +R  L + V     Q F+T TD  +F  L E  
Sbjct: 295 ELEFVYSEIGEYPILLLDDVMSELDLLRRKQLLQFVHQ-RIQTFITTTDPLLFSMLQEGC 353

Query: 363 KFMRISNHQALC 374
           +  +I + + + 
Sbjct: 354 Q-WKIEDGKVIQ 364


>gi|212632927|ref|YP_002309452.1| recombination protein F [Shewanella piezotolerans WP3]
 gi|226737834|sp|B8CH73|RECF_SHEPW RecName: Full=DNA replication and repair protein recF
 gi|212554411|gb|ACJ26865.1| DNA replication and repair protein RecF [Shewanella piezotolerans
           WP3]
          Length = 360

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 164/373 (43%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I  FRN  S +L       +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLNRLHIEAFRNITSAQLQPGDGLNVIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               + +  + FA ++  E  + I ++     +  V+   IN   ++ +  L + L I  
Sbjct: 61  INNDADA-LTLFANMQSAEDESKIGLRRFRSGEIEVK---INGDKVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  DPR     ++  R+++ RN+LL +    SS   
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDPRFYAAWVNVRRILKQRNQLLRDESPYSS-IQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +       +   R + +++L+ L+   ++ E  P + + ++              K
Sbjct: 176 FWDKEFIRYAELVTEIRKQYVDSLNELLKGIIE-EFLPQVDVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EYA+ L      D  +  T+ GPH++DL +         A  S G+ K+++  + +A  
Sbjct: 228 TEYAQLLETQYPRDLATGFTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF--DSLNETA 362
           +L+        I L+D++ + LD   R  L + + D G+Q+F+T  + +      +   +
Sbjct: 287 KLLKQQIDKKSIYLVDDLPSELDAQHRKLLLQQLADTGAQVFVTAIEPAAIVDSLITPPS 346

Query: 363 KFMRISNHQALCI 375
           K   + + +   I
Sbjct: 347 KMFHVEHGRVTVI 359


>gi|329942796|ref|ZP_08291575.1| DNA replication and repair RecF family protein [Chlamydophila
           psittaci Cal10]
 gi|332287388|ref|YP_004422289.1| recombination protein F [Chlamydophila psittaci 6BC]
 gi|313847968|emb|CBY16965.1| DNA replication and repair protein [Chlamydophila psittaci RD1]
 gi|325506793|gb|ADZ18431.1| recombination protein F [Chlamydophila psittaci 6BC]
 gi|328815056|gb|EGF85045.1| DNA replication and repair RecF family protein [Chlamydophila
           psittaci Cal10]
 gi|328914637|gb|AEB55470.1| recF protein [Chlamydophila psittaci 6BC]
          Length = 368

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/368 (25%), Positives = 157/368 (42%), Gaps = 10/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRNY    + F        G+N  GKTN++EA+  LS GR FR +   + 
Sbjct: 1   MNILSLRLKNFRNYKEAEVSFSPNINYIFGENAQGKTNLIEALYVLSLGRSFRTSHLTEA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              GS  FF     +E       +   L T  D+  + +  +   I+ + +L   + I  
Sbjct: 61  IFFGSSYFF-----LEMTFEKDGVPHTLSTYVDKQGKKIFCDQSPIKTLSQLIGMIPIVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  + SG   +RR FL+ ++   DP+++  +  + R +  RN LL      +S  S
Sbjct: 116 FSAKDRCLISGSPSDRRLFLNLLLSQCDPQYKHSLSYYHRALLQRNTLLKTKQ--TSTLS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+A LG  + ++R      L+ LI E         + +     L  +   S  A+K
Sbjct: 174 VWDEQLATLGSYLCLSRYTCCTQLNQLIQELWNNSLSERLFIKFKSPLIKQCKISQEAVK 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            E  K+L      D     T +GPHR D  +   D  +     S G+++ +L  + LA +
Sbjct: 234 NELHKQLSASLHRDLELGNTSVGPHREDFTLMINDLPV-AQFSSEGQKQSLLAVLKLAES 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             I +     P+  +D+I A LD  + + L  +   +G Q  +T T      +L+ET + 
Sbjct: 293 LYIKSIHNVYPLFCMDDIHAGLDNQRISQLLGLAPSLG-QTLITSTTLPH-QTLSETHRI 350

Query: 365 MRISNHQA 372
             ++  Q 
Sbjct: 351 FSVNQAQI 358


>gi|299141070|ref|ZP_07034208.1| RecF protein [Prevotella oris C735]
 gi|298578036|gb|EFI49904.1| RecF protein [Prevotella oris C735]
          Length = 366

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 147/374 (39%), Gaps = 18/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I  ++N     +    +   F+G NGVGKTN+L+A+ +LS  R       + V
Sbjct: 1   MILNRLSILNYKNIREATISLSPKLNCFIGSNGVGKTNVLDAVHYLSFCRSAFNPIDSQV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F          EG  +       R  +  +  + N    R + +    + + +
Sbjct: 61  IMHNQD-FLVLEGNYTTDEGEEEQIYCGMKRGTK--KHFKRNKKEYRRLSQHIGLIPLVF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             PS   +  G S ERRR LD ++   D  +   +  + + ++ RN LL  E   D +  
Sbjct: 118 ASPSDSVLIEGGSEERRRLLDLVISQYDHAYIEALSAYNKALQQRNALLKMEDEPDKALL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E QMA  G  I   R   +  L  +        +  H  +SL     G+        
Sbjct: 178 EIWEEQMATNGEVIYQKRDTFVKRLVPVFQNIYSHISGGHETVSLNYVSHGQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +      +   R  D     +L G HR DL +      +    GS G+ K   + + LA 
Sbjct: 230 RGLLLDTIQRDRYKDRAVGYSLHGVHRDDLEMLLDGYQMKRE-GSQGQHKTYALALKLAQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSLNETA 362
              + +T+   P+LLLD+I   LD D+   + ++V   G  QIF+T T++   D +    
Sbjct: 289 FDFLRHTSNSTPLLLLDDIFDKLDADRVEQIVQLVGGEGFGQIFITDTNRDHLDRILANG 348

Query: 363 KF----MRISNHQA 372
            F      ++  + 
Sbjct: 349 DFDYRLFSVNRGEI 362


>gi|117618875|ref|YP_854530.1| DNA replication and repair protein RecF [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560282|gb|ABK37230.1| DNA replication and repair protein RecF [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 367

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 92/370 (24%), Positives = 154/370 (41%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S+FRN     L       I VG NG GKT++LEAI +L  GR FR      V
Sbjct: 1   MSLVKLQLSDFRNIQQASLALSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G    F+ FA+ E       I +    +D      L+I     + + EL + L +  
Sbjct: 61  IRQG-ERAFTLFAQCELEGRQVPIGL---AKDKSGETQLKIAGAQAQRLAELAELLPVQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR +LD  VF  +P          RL++ RN LL +        +
Sbjct: 117 IHPDGFNLLTGGPQARRAWLDWGVFHQEPTFFSLWGRVRRLLKQRNALLRQS-SQYRQLA 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  LG ++   R     A++ LI E    +  P   +SL  +   + D    AL 
Sbjct: 176 YWDQELVRLGGELAEFRASYCQAITPLIKEMTA-DFLPEFDISLGFYRGWEKDTPLNAL- 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L  G + D     T +GP ++D+ +   +        S G+ K+++  + LA  
Sbjct: 234 ------LEAGFERDRALGYTGVGPQKADVRLK-ANGVPAQDILSRGQLKLLVCAMRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--TA 362
             ++  +    I L+D+ ++ LD DKR  L   +    SQ+F+T  D      + +    
Sbjct: 287 LYLNQHSSRGCIFLIDDFASELDVDKRRLLAARLKQCASQVFITAIDTGQLADMMDANDC 346

Query: 363 KFMRISNHQA 372
           K   +   + 
Sbjct: 347 KLFHVEQGKI 356


>gi|217979344|ref|YP_002363491.1| DNA replication and repair protein RecF [Methylocella silvestris
           BL2]
 gi|217504720|gb|ACK52129.1| DNA replication and repair protein RecF [Methylocella silvestris
           BL2]
          Length = 398

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 140/372 (37%), Positives = 214/372 (57%), Gaps = 6/372 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +++FR+YASL +   AQ  +  GDNG GKTN+LEA+S L+PGRG RRA  +D  R
Sbjct: 23  VRRLTLADFRSYASLDMEILAQTVVLTGDNGAGKTNVLEALSLLTPGRGLRRAELSDCAR 82

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125
                 F+    ++   G   +   +E     +  R  +I+      +     H+R+ WL
Sbjct: 83  NFGGGGFAVSIEIDAEGGRLQLGTGVEPNGGAALARKFRIDREPAPSIRAFCDHIRVVWL 142

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF--DSSWC 183
            P+MD +F G   +RRRFLDR+V ++D  H  R+   ER +R RNRLL E     +  W 
Sbjct: 143 TPAMDGLFVGSPGDRRRFLDRLVLSLDADHGARVNALERALRSRNRLLEERGAGNERLWL 202

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFD-QSF 240
            ++E ++AEL + +  AR E ++ L++LI +   +    FP  +LSL G +D   + +  
Sbjct: 203 DAVEREVAELAIAVAAARFETVSKLAALIAQAGPETEGGFPLAELSLDGDIDRLIETRPA 262

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              ++EY K L D R  D+ + RTLIGP  SDL V +  K    +H STGEQK +LVG+ 
Sbjct: 263 LEAEDEYRKILRDNRGRDAAAGRTLIGPQSSDLAVRHARKQAAASHSSTGEQKALLVGLI 322

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA ARLI   +G AP++LLDEI+AH D  +R AL+ ++  +G+Q+++TG D S F  L  
Sbjct: 323 LAQARLIKAMSGLAPLVLLDEIAAHFDPKRRAALYELLGALGAQVWLTGADPSAFAELEG 382

Query: 361 TAKFMRISNHQA 372
            A+ ++++    
Sbjct: 383 KAQMLQVTPGAI 394


>gi|315634817|ref|ZP_07890099.1| recombination protein F [Aggregatibacter segnis ATCC 33393]
 gi|315476369|gb|EFU67119.1| recombination protein F [Aggregatibacter segnis ATCC 33393]
          Length = 358

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 80/369 (21%), Positives = 159/369 (43%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN  ++ L  D      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLTVENFRNLQAVDLELDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDQP-HFTLFGQIQEQQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F              RL++ RN  L +         
Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVSFYTLWASLSRLLKQRNAAL-QQVSSYQQMK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ +L  ++++ R E   AL   I E   +   P + +S++     + +Q+     
Sbjct: 176 IWDVELVKLAEQVSLLRAEYAQALQPEI-EQTCRLFLPELDISVSFHQGWEKEQN----- 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 230 --YAELLARNFERDRALGYTVSGPQKADFRFKANGLPVEDIL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363
             +        I L+D+ ++ LD+ KR+ L + + + GSQ+F+T   ++    +  +  +
Sbjct: 287 EHLMQQKQRHCIFLIDDFASELDQTKRSLLAQRLQNSGSQVFVTAITQNQLKEMQPKKHR 346

Query: 364 FMRISNHQA 372
             +I + + 
Sbjct: 347 TFKIESGKI 355


>gi|313885421|ref|ZP_07819171.1| DNA replication and repair protein RecF [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619151|gb|EFR30590.1| DNA replication and repair protein RecF [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 327

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 149/333 (44%), Gaps = 12/333 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K +++S +RNY++L+L  +   TI VG+N  GKTN+LEAI  LS  +  R     ++
Sbjct: 1   MKLKSIHLSHYRNYSNLQLELNDGLTILVGNNAQGKTNLLEAIFLLSVTKSHRTNHDQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G       FA VEG     + S  L  +     +  + N +    +      L +  
Sbjct: 61  IQWGQD-----FALVEGQVQTENYSYPLSLQISSKGKQAKFNYIDQAKLSSFIGKLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG----YFDS 180
             P   +I  G    RR+F+D  +    P + + ++ + RL++ RNR L +      FD 
Sbjct: 116 FAPEDLQIIKGAPGLRRKFIDTELGQSHPVYLQELLTYHRLLKQRNRYLKDYGRSTKFDD 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PHIKLSLTGFLDGKFDQ 238
            +   +  Q  E  VK+   R + +  L+ L  E  ++ +     + +S          Q
Sbjct: 176 LYFEVLSQQFIEQAVKVIGYRTKFVQDLARLAQEIQEELSGQKDQLTISYDASHSRLNYQ 235

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               L + +       ++ +     TL GPHR DL      K      GS G+Q+ +++ 
Sbjct: 236 EIDQLAQAFTDLFAANQQREKDQGVTLYGPHRDDLSFYLDGKPAQF-FGSQGQQRTIVLS 294

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           + LA   LI    G  P+LLLD++ + LD  ++
Sbjct: 295 LKLAEIELIKELKGHYPVLLLDDVLSELDAHRQ 327


>gi|94502203|ref|ZP_01308698.1| recombination protein F [Oceanobacter sp. RED65]
 gi|94425664|gb|EAT10677.1| recombination protein F [Oceanobacter sp. RED65]
          Length = 357

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 167/371 (45%), Gaps = 20/371 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +   RN +   +       +  G+NG GKT+ LEAI +L+  + FR     ++
Sbjct: 1   MAIELLMLQGVRNLSPTNVSPSPLVNLIYGENGSGKTSFLEAIYYLAYCKSFRTHKQKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +       + G   L    + +E   +   R +++N V +    EL   L I  
Sbjct: 61  IQHGQNT-------MTGFCQLPHKQLGVERNQEGQ-RRIKLNGVCLNSAAELASVLPIQL 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P+M R+  G    RR ++D  VF ++P+       F+R  + RN LL  G    S   
Sbjct: 113 LDPTMFRLLEGSPQLRREYIDWGVFHVEPQFFGIWKQFKRAHQTRNALLRAGGASESERK 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
              + +++L  +I   R+  +  L  L   Y+ + N   + ++++ +   K DQ      
Sbjct: 173 IWHSSLSDLANQITSMRIAYLERLKPLFDHYMARLNDG-LGVTMSFYQGWKKDQ------ 225

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    K D  S  T  GP R+DL +   +    +   S G+QK+V+  + LA A
Sbjct: 226 -DYYELLESSWKSDIESGYTKSGPQRADLRIK-AENVPAMDVLSRGQQKMVVCALKLAQA 283

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD---SLNET 361
            L    +G   I L+D+++A LD + R AL R++ ++  Q+F+T  + +      S +  
Sbjct: 284 DLYKQVSGSPCIFLVDDLAAELDINHRKALCRLLEELKCQVFVTAVESTQIQGCWSPSSQ 343

Query: 362 AKFMRISNHQA 372
            K   + +   
Sbjct: 344 LKTFHVEHGTI 354


>gi|146291114|ref|YP_001181538.1| recombination protein F [Shewanella putrefaciens CN-32]
 gi|166221865|sp|A4Y1A6|RECF_SHEPC RecName: Full=DNA replication and repair protein recF
 gi|145562804|gb|ABP73739.1| DNA replication and repair protein RecF [Shewanella putrefaciens
           CN-32]
          Length = 360

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 163/373 (43%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI  FRN    +L+      +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLTRLNIEAFRNIQFAQLIPAPGINVIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +    + FA +    G + I ++     +  V+   I+   ++ +  L + L I  
Sbjct: 61  INNDNDK-LTLFATLNLARGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  DP+      +  R+++ RN+LL  G   +    
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHADPQFYGAWTNVRRVIKQRNQLLRNGAVYTH-IQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +      ++   R   +++L+ L+   +  E  P + + ++              K
Sbjct: 176 FWDQEFVRYAEQVTEIRNHYVDSLNGLLKGII-GEFLPSVDVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++A+ L +    D  +  T+ GPH++DL +   +     A  S G+ K+++  + +A  
Sbjct: 228 TDFAELLENQYSRDLATGHTVSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA- 362
           +L+        I L+D++ + LD   R  L + +TD G+Q+F+T  D +   DSL+    
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPN 346

Query: 363 KFMRISNHQALCI 375
           +   +   +   +
Sbjct: 347 RMFHVEQGRVTVV 359


>gi|126172260|ref|YP_001048409.1| recombination protein F [Shewanella baltica OS155]
 gi|160873129|ref|YP_001552445.1| recombination protein F [Shewanella baltica OS195]
 gi|166221862|sp|A3CYH7|RECF_SHEB5 RecName: Full=DNA replication and repair protein recF
 gi|189039641|sp|A9KU74|RECF_SHEB9 RecName: Full=DNA replication and repair protein recF
 gi|125995465|gb|ABN59540.1| DNA replication and repair protein RecF [Shewanella baltica OS155]
 gi|160858651|gb|ABX47185.1| DNA replication and repair protein RecF [Shewanella baltica OS195]
 gi|315265354|gb|ADT92207.1| DNA replication and repair protein RecF [Shewanella baltica OS678]
          Length = 360

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/373 (24%), Positives = 164/373 (43%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI  FRN  S +L+      +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLTRLNIEAFRNIQSAQLIPAPGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                    + FA +    G + I ++     +  VR   I+   ++ +  L + L I  
Sbjct: 61  INND-DDKLTLFATLNLARGDSKIGLRRFRSGETEVR---IDGEKVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  DP+      +  R+++ RN+LL  G   S+   
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHADPQFYGAWTNVRRVLKQRNQLLRNGSAYSN-IQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +      ++   R   +++L+ L+   +  E  P + + ++              K
Sbjct: 176 FWDQEFVRYAEQVTEIRNHYVDSLNELLKGII-GEFLPSVDVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++A+ L +    D  +  T+ GPH++DL +         A  S G+ K+++  + +A  
Sbjct: 228 TDFAELLENQYSRDLATGHTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362
           +L+        I L+D++ + LD   R  L + +TD G+Q+F+T  D +   DSL+   +
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPS 346

Query: 363 KFMRISNHQALCI 375
           +   +   +   I
Sbjct: 347 RMFHVEQGRVTVI 359


>gi|145297127|ref|YP_001139968.1| DNA replication and repair protein RecF [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142849899|gb|ABO88220.1| DNA replication and repair protein RecF [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 367

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 91/370 (24%), Positives = 154/370 (41%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S+FRN     L       I VG NG GKT++LEAI +L  GR FR      V
Sbjct: 1   MSLVKLQLSDFRNIQQASLKLSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G    F+ FA+ E       I +    +D      L+I     + + +L + L +  
Sbjct: 61  IRQG-ERAFTLFAQCELEGRQVPIGL---AKDKSGETQLKIAGAQAQRLADLAELLPVQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR +LD  VF  +P          RL++ RN LL +        +
Sbjct: 117 IHPDGFNLLTGGPQARRAWLDWGVFHQEPTFFSLWGRVRRLLKQRNALLRQST-QYRQLA 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  LG ++   R     A++ LI E    +  P   +SL  +   + D     L 
Sbjct: 176 FWDQELVRLGGELAEFRASYCQAITPLIKEMTA-DFLPEFDISLGFYRGWEKDTPLGDL- 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L  G + D     T +GP ++D+ +   +        S G+ K+++  + LA  
Sbjct: 234 ------LEAGFERDRTLGYTGVGPQKADVRLK-ANGVPAQDILSRGQLKLLVCAMRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--TA 362
             ++  +    I L+D+ ++ LD DKR  L   +   GSQ+F+T  D      + +    
Sbjct: 287 LYLNQHSSRGCIFLIDDFASELDVDKRRLLATRLKQCGSQVFITAIDTGQLADMMDANDC 346

Query: 363 KFMRISNHQA 372
           K   +   + 
Sbjct: 347 KLFHVEQGKI 356


>gi|217971219|ref|YP_002355970.1| recombination protein F [Shewanella baltica OS223]
 gi|304412707|ref|ZP_07394310.1| DNA replication and repair protein RecF [Shewanella baltica OS183]
 gi|307305828|ref|ZP_07585574.1| DNA replication and repair protein RecF [Shewanella baltica BA175]
 gi|254790487|sp|B8E3P6|RECF_SHEB2 RecName: Full=DNA replication and repair protein recF
 gi|217496354|gb|ACK44547.1| DNA replication and repair protein RecF [Shewanella baltica OS223]
 gi|304348917|gb|EFM13332.1| DNA replication and repair protein RecF [Shewanella baltica OS183]
 gi|306911321|gb|EFN41747.1| DNA replication and repair protein RecF [Shewanella baltica BA175]
          Length = 360

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/373 (24%), Positives = 164/373 (43%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI  FRN  S +L+      +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLTRLNIEAFRNIQSAQLIPAPGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                    + FA +    G + I ++     +  VR   I+   ++ +  L + L I  
Sbjct: 61  INND-DDKLTLFATLNLARGDSKIGLRRFRSGETEVR---IDGEKVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  DP+      +  R+++ RN+LL  G   S+   
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHADPQFYGAWTNVRRVLKQRNQLLRNGSSYSN-IQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +      ++   R   +++L+ L+   +  E  P + + ++              K
Sbjct: 176 FWDQEFVRYAEQVTEIRNHYVDSLNELLKGII-GEFLPSVDVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++A+ L +    D  +  T+ GPH++DL +         A  S G+ K+++  + +A  
Sbjct: 228 TDFAELLENQYSRDLATGHTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362
           +L+        I L+D++ + LD   R  L + +TD G+Q+F+T  D +   DSL+   +
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPS 346

Query: 363 KFMRISNHQALCI 375
           +   +   +   I
Sbjct: 347 RMFHVEQGRVTVI 359


>gi|313892256|ref|ZP_07825849.1| DNA replication and repair protein RecF [Dialister microaerophilus
           UPII 345-E]
 gi|313119394|gb|EFR42593.1| DNA replication and repair protein RecF [Dialister microaerophilus
           UPII 345-E]
          Length = 356

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 159/350 (45%), Gaps = 8/350 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK   + + RN+ ++ +  D   TIF G NG GKTN+LE+++  S G+ FR     ++
Sbjct: 1   MKIKKFRLIQVRNFENIEIETDKNITIFTGKNGAGKTNLLESVNLASFGKSFRTNKDEEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +       +      G     +I IK+   + +    + +N+  I+  D L    +   
Sbjct: 61  IKFDKNECTTILTFNSGKSN-HEIKIKISKTNGKQ---IFLNENRIKNKD-LVGIFKTVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182
             P   ++  G   +RRRFLD  +  I+PR+    I+++R ++ RN  L           
Sbjct: 116 FNPDEMQLIKGNPQKRRRFLDMEISQINPRYYYEWINYKRAVQQRNAELKNAQIRGVKPQ 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+A+    I   R+E I  L+  I +  ++       L L              
Sbjct: 176 TDIWDMQIAKGAAYIVRKRIEAIQKLNESIEKTEERLTKNRENLKLYYIQKESKKNETNF 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E Y  KL + R  D    +T +GPHR D++     K I+  +GS G+Q+  ++ I L+
Sbjct: 236 DVEWYIHKLLEKRHEDIKFCQTSVGPHRDDILFLLNGKDIS-KYGSQGQQRTAILSIKLS 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
               I   TG  P+LLLD++ + LD +++  LF  V +   Q  MT T+K
Sbjct: 295 EMEFIKKETGEYPVLLLDDVGSELDGERKKVLFEYVKEKDIQTIMTMTEK 344


>gi|148555709|ref|YP_001263291.1| recombination protein F [Sphingomonas wittichii RW1]
 gi|259563672|sp|A5VA37|RECF_SPHWW RecName: Full=DNA replication and repair protein recF
 gi|148500899|gb|ABQ69153.1| DNA replication and repair protein RecF [Sphingomonas wittichii
           RW1]
          Length = 356

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 135/369 (36%), Positives = 202/369 (54%), Gaps = 17/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +++FR+YAS  +       +  G+NG GKTNILEA+S L PGRG R A+ A++
Sbjct: 1   MTVARLMLTDFRSYASATIAAGPGFVVLTGENGAGKTNILEAVSMLGPGRGLRGAALAEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G    F+  A +     L   +           R ++IN         L + L + W
Sbjct: 61  AREGGAGGFAVAAELSDEVRLGTGTTP----AAPERRQVRINGAPA-SATALGEWLSLLW 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           L P+MDR+F+  +  RRRFLDR+V AI+P H R +  ++  MR RN+LL  EG  D++W 
Sbjct: 116 LTPAMDRLFTEGAEGRRRFLDRLVLAIEPGHARHVSRYDAAMRARNKLLAAEGPPDAAWL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            ++EAQ+ + G  I  AR   + AL+  I        F    L++ G++  +        
Sbjct: 176 DALEAQLGQHGQAIAEARARTVTALALRIAAE-PDAPFARAALAIEGWVPSRRP------ 228

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
               A++L  GR  D  + RTL GPHR DL V +  K    A  STGEQK +L+GI LAH
Sbjct: 229 ---LAEELRHGRARDVAAGRTLSGPHRQDLAVSHAAKQQPAARASTGEQKALLLGIVLAH 285

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           A L++   G  PILL+DE++AHLD  +R ALF  +   G QI++TGT++++FD + E A 
Sbjct: 286 ADLVAERRGRRPILLMDEVAAHLDPVRRAALFERLGRSGGQIWLTGTERALFDGIGE-AT 344

Query: 364 FMRISNHQA 372
           ++ +   + 
Sbjct: 345 WLAVRAGRV 353


>gi|329962146|ref|ZP_08300157.1| DNA replication and repair protein RecF [Bacteroides fluxus YIT
           12057]
 gi|328530794|gb|EGF57652.1| DNA replication and repair protein RecF [Bacteroides fluxus YIT
           12057]
          Length = 369

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 154/373 (41%), Gaps = 20/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F  +   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEQVELTFSPKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R  +  FF      E  +G   +I   ++ R  +  +    N      + +    L + 
Sbjct: 61  IRHEAD-FFVIQGFYEASDGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   +   
Sbjct: 117 MVSPADSELIAGGSEERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I     +   +    +    ++ L+     +       
Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFIQEFIPIFQSFYSFISQDKEQVGLSYDSHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L + R  D +   +L G H+ +L +   D  I    GS G+ K  L+ + LA
Sbjct: 231 --TSLLEVLKESRVRDRIMGYSLRGVHKDELNMLLGDFPIKRE-GSQGQNKTYLIALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V   G  QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIIKLVASDGFGQIFITDTNREHLDRILHK 347

Query: 359 -NETAKFMRISNH 370
                K +R+   
Sbjct: 348 VGSDYKMLRVEQG 360


>gi|305666506|ref|YP_003862793.1| DNA replication and repair protein RecF [Maribacter sp. HTCC2170]
 gi|88708773|gb|EAR01008.1| DNA replication and repair protein RecF, ABC family ATPase
           [Maribacter sp. HTCC2170]
          Length = 359

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 164/372 (44%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N+ S    FD++   FVG NGVGKTN L+AI  LS G+G+        
Sbjct: 1   MFLKKLSLINYKNFDSQTFEFDSKTNCFVGPNGVGKTNALDAIYHLSFGKGYFNPVATQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     FF      E  +    I   L+       + ++ N      + +    L +  
Sbjct: 61  IKH-EEDFFVVDGEFEKFDRKEKIVCSLKRGMK---KIIKRNGKPYERLSDHIGLLPLVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   + +  S  RR+F+D ++   D  + + +I + +++  RN LL        FD+
Sbjct: 117 ISPADRDLITEGSDTRRKFIDGVISQSDKEYLQILIKYNKVLVQRNSLLKYFVANQTFDA 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           S  S  + Q+   G +I   R++ +     +  E     +  + +++L+   D K  ++ 
Sbjct: 177 STLSVYDEQLHNYGSEIFKKRLDFVATFIPIFKEQYAAISGGNEEVTLSY--DSKLHEN- 233

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                +    L    + D M + T +G H+ DL        I    GS G+QK  L+ + 
Sbjct: 234 -----DLLTLLATNVEKDRMLQYTSVGIHKDDLSFQIAGHPIK-KFGSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVF 355
            A    I       PILLLD+I   LDE++   +  +V +    QIF++ T     + + 
Sbjct: 288 FAQFHFIKKQAKATPILLLDDIFDKLDENRVAQIVGMVDNENFGQIFISDTHAERTEEIV 347

Query: 356 DSLNETAKFMRI 367
            +++++ +  ++
Sbjct: 348 KNIHQSYQIFKL 359


>gi|332654822|ref|ZP_08420564.1| DNA replication and repair protein RecF [Ruminococcaceae bacterium
           D16]
 gi|332516165|gb|EGJ45773.1| DNA replication and repair protein RecF [Ruminococcaceae bacterium
           D16]
          Length = 372

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 92/377 (24%), Positives = 163/377 (43%), Gaps = 16/377 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +  FRNYA +   F  +  +  GDN  GKTN+LEAI++LS  R  R     ++
Sbjct: 1   MKLNRLELDFFRNYAHVEATFHPRVNLIYGDNAQGKTNLLEAIAYLSSARSHRARYDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
             +  P  +     ++G     + +  LE +  R   R L  N + ++   EL   L   
Sbjct: 61  IMLNEPQGY-----IKGEVDSRERTFILEAKLCRGKTRQLWSNGLRLKTAGELAGILTTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    +    +  RRRFLD  +  + PR+ + + ++ RL   + R+L +   + S  
Sbjct: 116 LFCPEDLYLIREGAAARRRFLDGAICQLRPRYAQALAEYNRLYEHKTRILRDWQENPSLL 175

Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +++    +MA+ G +I   R   +  L           +    +L L            
Sbjct: 176 DTLDDFNLRMAQFGARIIHYRAHFVRRLGEQAPAIHADFSGGREQLGLRYETVSTVQDPL 235

Query: 241 CALK---EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +++   E   +     R+ +  SR+ L GPH+ DL+V+  D       GS G+ +   +
Sbjct: 236 GSVQDIFESLMRHQESHRRAELDSRQCLSGPHKDDLVVEL-DGQSAKQFGSQGQTRTAAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA   +    TG  P+LLLD++ + LD  +++ +   +   G Q+F+T  +    D 
Sbjct: 295 SLKLAQREIFQQETGEWPVLLLDDVLSELDGKRQSFVLNRIQ--GGQVFITCCEPEKLDG 352

Query: 358 LNETAKFMRISNHQALC 374
           L E  K  +I     L 
Sbjct: 353 L-ERGKSFQIQGGSVLS 368


>gi|293391839|ref|ZP_06636173.1| DNA replication and repair protein RecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952373|gb|EFE02492.1| DNA replication and repair protein RecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 358

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 155/372 (41%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN  ++ L  D      VG+NG GKT++LEAI +L  GR F+ A    V
Sbjct: 1   MAISRLTVENFRNLQAVDLELDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++       + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDQP-HFTLFGQIQEQRHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F              RL++ RN  L +     S   
Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVAFYNLWASLNRLLKQRNAAL-QPTSAYSQMK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ +L  +++  R +   AL   I E   +   P + +S++     + +Q      
Sbjct: 176 IWDVELVKLAEQVSQLRADYALALQPEI-EQTCRLFLPELDISVSFHQGWEKEQ------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -YYAELLERNFERDRALGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             +        I L+D+ ++ LD+ KR  L   + + GSQ+F+T  T   + +   +  +
Sbjct: 287 EHLMRQKQRHCIFLIDDFASELDQTKRRLLAERLQNSGSQVFVTAITSNQLKEMQPKKHR 346

Query: 364 FMRISNHQALCI 375
             +I   +   +
Sbjct: 347 TFKIDTGKIALL 358


>gi|225016756|ref|ZP_03705948.1| hypothetical protein CLOSTMETH_00668 [Clostridium methylpentosum
           DSM 5476]
 gi|224950424|gb|EEG31633.1| hypothetical protein CLOSTMETH_00668 [Clostridium methylpentosum
           DSM 5476]
          Length = 376

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 158/376 (42%), Gaps = 17/376 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI       FRN   + L  D    +  G N  GKTN++EAI   S  + FR    + +
Sbjct: 1   MKITEFKAHNFRNLQDIVLTPDPGINLIYGQNAQGKTNLIEAIWLFSGEKSFRGNKDSRM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F +     +  E      I+L  ++        +N V  + +  L    +   
Sbjct: 61  IWF-EEQFATLSLSFDDGEREQHAQIRLGEKNS-----CTLNRVEQKSLSALAGAFQCVV 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SS 181
             P+   +  G    RR+FLD  +  I P +   +  +ER++  RN LL E         
Sbjct: 115 FSPTHLAVVQGGPSLRRKFLDSAICQIRPDYHGYLGQYERVLAQRNSLLKEIARYSYLRD 174

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL---DGKFDQ 238
                + Q+A+LG  + I R + +  +           +    +L L+      D   D 
Sbjct: 175 TIEVWDRQLAKLGTIVTILRQDYVCKVEKFAKHSYAGISSDREQLGLSYQSTAFDSLLDH 234

Query: 239 SFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           ++   K + Y  +L +    D     T IG HR DL +     A+   +GS G+Q+  ++
Sbjct: 235 AYTQDKVDCYFSRLEESLDQDIRQGFTGIGVHRDDLELLINGLAVK-TYGSQGQQRSTIL 293

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA ARL+ + TG  P++LLD++ + LD  +++ L   + +  +Q+F+T  D S    
Sbjct: 294 ALKLAEARLLKSITGNHPVILLDDVMSELDISRQDYLLNHIRE--NQVFITCCDSSNTLR 351

Query: 358 LNETAKFMRISNHQAL 373
           L ++ +   I   + L
Sbjct: 352 L-QSGRVFHIDGGKLL 366


>gi|160890975|ref|ZP_02071978.1| hypothetical protein BACUNI_03420 [Bacteroides uniformis ATCC 8492]
 gi|270294288|ref|ZP_06200490.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156859196|gb|EDO52627.1| hypothetical protein BACUNI_03420 [Bacteroides uniformis ATCC 8492]
 gi|270275755|gb|EFA21615.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 370

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 152/375 (40%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F  +   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               +  FF      E  +G   +I   ++ R  +  +    N      + +    L + 
Sbjct: 61  ICHDAD-FFVIQGFYEAADGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   +   
Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I     +   +    +    K+ L+     +       
Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFIREFIPIFQSFYSFISQDREKVGLSYDSHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L + R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA
Sbjct: 231 --ASLLEVLKESRARDQIMGYSLRGVHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDSFGQIFITDTNREHLDRILHK 347

Query: 359 -NETAKFMRISNHQA 372
                K  R+     
Sbjct: 348 VGSDYKMFRVEQGTV 362


>gi|260912771|ref|ZP_05919257.1| recombination protein F [Pasteurella dagmatis ATCC 43325]
 gi|260633149|gb|EEX51314.1| recombination protein F [Pasteurella dagmatis ATCC 43325]
          Length = 358

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 157/367 (42%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I  FRN  ++ L FD      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLIENFRNLTAVDLEFDRGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P F    A+++       + ++   +  +    +++N      + +L   L +  
Sbjct: 61  ISYEQPHFI-LHAKIQEQNHQWSVGLQ---KLRQGNSLVKVNGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F          ++  RL++ RN  L +     S   
Sbjct: 117 ITPEGLILLNGGPSYRRAFLDWGLFHHHNHFHLAWVNLNRLLKQRNAAL-QQVTHYSELE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ +L  +++  R E   AL   I E   +   P +++S++     + D+      
Sbjct: 176 IWDRELVKLAQQVSEWRKEYAEALRPEI-EQTCRLFLPELEISVSFHQGWEKDR------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L    + D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -DYAELLATNFERDRAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             +        + L+D+ ++ LDE KR  L   +   GSQ+F+T  T+  +     E  +
Sbjct: 287 EHLMKQKQRHCLFLIDDFASELDEHKRALLAERLKQSGSQVFVTAITESQLKQMQPEKHR 346

Query: 364 FMRISNH 370
             R+ N 
Sbjct: 347 TFRVENG 353


>gi|167031026|ref|YP_001666257.1| recombination protein F [Pseudomonas putida GB-1]
 gi|189039633|sp|B0KEV1|RECF_PSEPG RecName: Full=DNA replication and repair protein recF
 gi|166857514|gb|ABY95921.1| DNA replication and repair protein RecF [Pseudomonas putida GB-1]
          Length = 367

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 157/374 (41%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L+   +  I  G NG GKT++LEA+  L   R FR +    V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSSRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVDELNKHLRIS 123
            +   P+  + F  VE  EG    + KL    +R     ++I+    R   +L + L + 
Sbjct: 61  IQYEQPAC-TVFGEVELTEG---GTCKLGVSRERQGEFTIRIDGQNARSAAQLAELLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +    +  E      L+L+ +     D+     
Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFERTLS-ELVELDGLTLSYYRGWDKDR----- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             E  + L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 231 --ELQEVLASSLLRDQQMGHTQAGPQRADLRLRLAGNNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  +         
Sbjct: 288 GHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|258513370|ref|YP_003189592.1| DNA replication and repair protein RecF [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777075|gb|ACV60969.1| DNA replication and repair protein RecF [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 376

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 96/353 (27%), Positives = 164/353 (46%), Gaps = 14/353 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK L I+ FRNY SL +       IF+GDN  GKTNILEAI FL  GR FR +   ++
Sbjct: 1   MRIKELFINNFRNYKSLHIKPKENLNIFIGDNAQGKTNILEAICFLLQGRSFRTSHEKEI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S         ++       I I L        + ++IN+       EL  +     
Sbjct: 61  INFDSEQ-SKLKTELKAYNQNYSIDISLS---RTKPKIIKINNSTTSKP-ELATNFGTIV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    I  G   ERRRFLD  + +  P+++   +++++++  RN LL E         
Sbjct: 116 FTPDQLSIIKGSPKERRRFLDLELASFYPQYKYYFVNYQKVLLQRNNLLKELKEKKQADT 175

Query: 181 -SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                  + Q+   G KI +AR+E++  L  +  +   +      KL++        + +
Sbjct: 176 FDLLELWDNQLISYGAKILMARMEILKKLIPMAQQIHNQITSDKEKLTIRYRSSLNLNSN 235

Query: 240 FCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           F    + +++ + +   R+ D +  +T +GPHR DL+    +K IT   GS G+Q+ +++
Sbjct: 236 FREELIYDQFREVILKNRQQDYLKGQTTVGPHRDDLVFLINNKNIT-DFGSQGQQRTIIL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            +  A   L S      P+LLLD++   LD  ++  +F ++     Q+F+T T
Sbjct: 295 TLKFAIINLWSCELNDVPVLLLDDVFFELDSKRQKYIFDLLNK-DVQVFITST 346


>gi|152998558|ref|YP_001364239.1| recombination protein F [Shewanella baltica OS185]
 gi|166221863|sp|A6WH87|RECF_SHEB8 RecName: Full=DNA replication and repair protein recF
 gi|151363176|gb|ABS06176.1| DNA replication and repair protein RecF [Shewanella baltica OS185]
          Length = 360

 Score =  296 bits (757), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 90/373 (24%), Positives = 163/373 (43%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI  FRN  S +L+      +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLTRLNIEAFRNIQSAQLIPAPGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                    + FA +    G + I ++     +  VR   I+   ++ +  L + L I  
Sbjct: 61  INND-DDKLTLFATLNLARGDSKIGLRRFRSGETEVR---IDGEKVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  DP       +  R+++ RN+LL  G   S+   
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHADPLFYGAWTNVRRVLKQRNQLLRNGSSYSN-IQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +      ++   R   +++L+ L+   +  E  P + + ++              K
Sbjct: 176 FWDQEFVRYAEQVTEIRNHYVDSLNELLKGII-GEFLPSVDVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++A+ L +    D  +  T+ GPH++DL +         A  S G+ K+++  + +A  
Sbjct: 228 TDFAELLENQYSRDLATGHTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362
           +L+        I L+D++ + LD   R  L + +TD G+Q+F+T  D +   DSL+   +
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLTDTGAQVFVTAIDPAAIVDSLHTPPS 346

Query: 363 KFMRISNHQALCI 375
           +   +   +   I
Sbjct: 347 RMFHVEQGRVTVI 359


>gi|332882412|ref|ZP_08450040.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332679796|gb|EGJ52765.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 365

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 163/376 (43%), Gaps = 21/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  ++N A   L F  +   F+G NG GKTN+L+A+ FLS  +    +  +  
Sbjct: 1   MILKKISVLNYKNIAQAELAFSPKMNCFIGHNGEGKTNLLDAVYFLSFCKSATNSVDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   FF      E   G   ++   L+ +  +  +  +      + + E    + + 
Sbjct: 61  IRHGED-FFMLQGEYEHESGEPEEVYCGLKRKQKKRFKRNK---KEYKRLSEHIGLVPVV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + SG S ERRRF+D ++   D  +   ++ + + ++ RN LL  E   D + 
Sbjct: 117 LVSPADADLISGGSEERRRFMDMVIVQYDHEYLDALVRYNKALQQRNVLLKQEEEPDEAL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G KI   R   +     +  ++  + +     + L     G+       
Sbjct: 177 MGLWEEMMAQEGEKIYEKRKAYVEEFIPVFQDFYARISRGKEHVGLRYISHGQ------- 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            + E    +   R  D +   +L G H+ DL +   +  I    GS G+ K  L+ + LA
Sbjct: 230 -RGELLDVIRRDRAKDRIMGYSLHGVHKDDLEMTLGEFPIKRE-GSQGQNKTYLIALKLA 287

Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL-- 358
               +  T +   P+LLLD+I   LD D+   + ++V+     QIF+T T++   D +  
Sbjct: 288 QFDFLRRTGSRTTPLLLLDDIFDKLDADRVEQIVKLVSGEQFGQIFVTDTNREHLDRILE 347

Query: 359 --NETAKFMRISNHQA 372
             +E  K   + N + 
Sbjct: 348 KTDEDYKLFYVENGEI 363


>gi|60680428|ref|YP_210572.1| putative DNA replication and repair protein [Bacteroides fragilis
           NCTC 9343]
 gi|81316502|sp|Q5LGW6|RECF_BACFN RecName: Full=DNA replication and repair protein recF
 gi|60491862|emb|CAH06620.1| putative DNA replication and repair protein [Bacteroides fragilis
           NCTC 9343]
          Length = 370

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 89/375 (23%), Positives = 157/375 (41%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E M+G   +I   ++ R  +  +    N      + +    + + 
Sbjct: 61  IRHEQD-FFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKR---NKKEYSRLSDHIGFIPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   +   
Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPIEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I+    +   +    +    ++ LT     +       
Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHAR------- 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            K    + L + R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA
Sbjct: 230 -KASLLEVLKESRVRDKIMGYSLRGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILYK 347

Query: 359 -NETAKFMRISNHQA 372
                K  R+ +   
Sbjct: 348 VGSDYKMFRVESGAI 362


>gi|309774993|ref|ZP_07670009.1| DNA replication and repair protein RecF [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308917247|gb|EFP62971.1| DNA replication and repair protein RecF [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 366

 Score =  296 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 163/370 (44%), Gaps = 9/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L + +FRNYA + + F     I  G N  GKTN+LE+I +LS  R  R +   D+
Sbjct: 1   MRLETLRLHDFRNYADINVSFSDGIHILTGKNAQGKTNLLESILYLSTTRSHRTSEDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +FF   A +   +   DI + +    +   + L I    +  V +         
Sbjct: 61  IKEGEEAFF-IKASIAKEQKTEDIRVTV----NEKGKNLFIYQNPVNRVSDFIGEFNSVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +F      RRRF+D  +  I  ++   +    RL++ RN  L +   D S+  
Sbjct: 116 FCPDDMNLFQASPRVRRRFVDMELSKISKKYVSTLYVATRLLKERNAYLKQERVDRSYLE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            + AQ+ +  V I   R   +  L      + ++ +     +++       F +    LK
Sbjct: 176 VLTAQLVDASVIIIKQRHFFLEELLEKCRAFYRQLSNDDTDITVRYLSCVPFSEKEQELK 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +   KK       D + ++T  G H+ D I +  +K + +++ S G+++ VL+ + +   
Sbjct: 236 DALLKKYQKHLDRDLLLKQTTAGIHKEDFIFEMNNKEL-VSYASQGQKRSVLLALKIGMI 294

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            +I   T   P+LLLD++ + LD  ++  L + +     QIF++ TD    + +N   + 
Sbjct: 295 HMIHEITQEYPVLLLDDVFSELDSYRKAELLKSLPQ-EVQIFISTTDTVDMEDINSNRRV 353

Query: 365 --MRISNHQA 372
               ++N   
Sbjct: 354 TLWYVNNGTI 363


>gi|288924856|ref|ZP_06418793.1| RecF protein [Prevotella buccae D17]
 gi|288338643|gb|EFC76992.1| RecF protein [Prevotella buccae D17]
          Length = 372

 Score =  296 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 154/375 (41%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L+I  ++N     +    +    +G NGVGKTN L+A+ +LS  R       + +
Sbjct: 1   MVLRKLSIVNYKNIRVANVDLSPKMNCLIGHNGVGKTNFLDAVYYLSFCRSAFNPVDSQL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G   F        G E    I   ++     + +  + N    + + +    + + +
Sbjct: 61  ITHGEDFFVLEGEYDTGAEDSEQIYCGMKRG---TKKHFKRNKKEYKRLSQHIGLIPLVF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
           + PS   +  G S ERR  LD ++   D  +   +  + + ++ RN LL   +G  D + 
Sbjct: 118 VSPSDTSLIEGASEERRHLLDVVIAQYDRSYMESLAAYNKALQQRNALLKTEDGEPDETL 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E +MA  G  I   R + +  L  +  +  Q  +     +SL      +       
Sbjct: 178 MEIWEEEMARNGELIYQKRNDFVRELIPVFQDIYQHISQQREIVSLKYVSHCQRGP---- 233

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + +   R  D     +L G HR DL +   D       GS G+ K  ++ + LA
Sbjct: 234 ----LLEVIRRDRFKDRAVGYSLHGVHRDDLEM-LIDGYQLKKEGSQGQNKTFVLALKLA 288

Query: 303 HARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360
               + NTT G  P+LLLD+I   LD  +   + ++V+ D   QIF+T T++   D +  
Sbjct: 289 QFNFLKNTTSGTTPLLLLDDIFDKLDAQRVEQIVKLVSGDNFGQIFITDTNRDHLDKILH 348

Query: 361 TA----KFMRISNHQ 371
           ++    K   + N +
Sbjct: 349 SSAMDYKIFAVENGE 363


>gi|326390361|ref|ZP_08211920.1| DNA replication and repair protein RecF [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993638|gb|EGD52071.1| DNA replication and repair protein RecF [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 362

 Score =  295 bits (756), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 86/372 (23%), Positives = 160/372 (43%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRN    ++ F     IF G N  GK+N+LE+I  LS GR FR +   ++
Sbjct: 1   MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTEL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G   F        E  +   +   K         + +++N   I+   EL   L   
Sbjct: 61  IKFGEDYFYVKAIICQENNDKKIEFGYK-----KNENKVIKVNGNKIKSTSELLGQLLTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSS 181
              P    I       RR++LD  +  ++  +   ++ + +++  RN+LL   +     S
Sbjct: 116 IFSPEDLNIIKEGPSYRRKYLDSCISVVEKNYLYNLMQYNKILINRNKLLKTIKEGKSRS 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + Q+ E G KI + R   +  +   I +++ + +    ++     +  K      
Sbjct: 176 ILEVFDDQLVEYGAKIIVVRQSYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEE 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +K+   +KL     +D     T +GPHR D  +   +   +  + S G+Q+ V + + L
Sbjct: 236 IVKKRLKEKLLKNIDLDLKYLTTQVGPHREDFKI-IINGYDSRVYSSQGQQRTVALCLKL 294

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           +   ++   TG  PILLLD++ + LDE+++  +   +   G Q F+T T K     L   
Sbjct: 295 SEFEILKKETGEKPILLLDDVMSELDENRKKYILERLQ--GFQTFITHTTKR---DLKGD 349

Query: 362 AKFMRISNHQAL 373
             + +ISN   +
Sbjct: 350 C-YFKISNGVVI 360


>gi|281419667|ref|ZP_06250666.1| RecF protein [Prevotella copri DSM 18205]
 gi|281406196|gb|EFB36876.1| RecF protein [Prevotella copri DSM 18205]
          Length = 405

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 83/376 (22%), Positives = 154/376 (40%), Gaps = 19/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  F+N  S  L    +    +G NG+GKTN L+AI +LS  R    +  + +
Sbjct: 41  MILKNISIINFKNIKSANLELSPKINCLIGHNGMGKTNFLDAIYYLSFCRSAYNSIDSQI 100

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P FF      +  +G  +       R  +  +  + N    + + +    + +  
Sbjct: 101 ITHDEP-FFMLEGNYDNDKGEIENVYCGMKRGTK--KHFKRNKKEYKRLSQHIGLIPLIL 157

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + PS   +  G S ERR+ +D ++   D  +   + ++ + ++ RN LL  E   D +  
Sbjct: 158 VSPSDVSLIEGGSEERRKLMDVVISQYDYSYIEALSNYNKALQQRNALLKMEEEPDITIL 217

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E QMA  G  +   R   ++ L  L  +  Q+ +    ++ L      +        
Sbjct: 218 ELWEQQMASNGELLYQKRQAFVDELVPLFQQIYQQISGDKEQVRLHYVSHCQRGP----- 272

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  +   R  D     +L G HR DL     D  +    GS G+ K  ++ + LA 
Sbjct: 273 ---LLDVIQRDRFKDRAVGYSLHGVHRDDLEFLLGDYPMKRE-GSQGQNKTFVIALKLAQ 328

Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361
              +   ++   P+LLLD+I   LD  +  A+ ++V  D   QIF+T T++   D +   
Sbjct: 329 FTFLQRTSSNTLPLLLLDDIFDKLDAQRVEAIVKLVAGDHFGQIFITDTNRDHLDKILHN 388

Query: 362 AK----FMRISNHQAL 373
            +       + N + +
Sbjct: 389 MQGDHTIFYVENGEII 404


>gi|148826361|ref|YP_001291114.1| recombination protein F [Haemophilus influenzae PittEE]
 gi|148716521|gb|ABQ98731.1| recombination protein F [Haemophilus influenzae PittEE]
          Length = 360

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 80/363 (22%), Positives = 154/363 (42%), Gaps = 15/363 (4%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
            + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    
Sbjct: 9   NMAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNR 68

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +     P  F+ F +++  +    + ++   +  +    ++IN      + +L   L + 
Sbjct: 69  IISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQ 124

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+  
Sbjct: 125 LITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-I 183

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + ++A+   +++  R E   AL   I +  Q    P ++++++     + +      
Sbjct: 184 KIWDVELAKFAHQVSQWRAEYAEALRPEIEQTCQ-LFLPELEINVSFHQGWEKN------ 236

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA 
Sbjct: 237 -ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQ 294

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362
              +        I L+D+ ++ LD+ KR  L   +   GSQ+F+T   K     +  E  
Sbjct: 295 GEHLMKEKQRHCIFLIDDFASELDQYKRALLAERLQQSGSQVFVTAITKRQLKEMQVENK 354

Query: 363 KFM 365
           K +
Sbjct: 355 KIV 357


>gi|330995529|ref|ZP_08319432.1| DNA replication and repair protein RecF [Paraprevotella xylaniphila
           YIT 11841]
 gi|329575309|gb|EGG56854.1| DNA replication and repair protein RecF [Paraprevotella xylaniphila
           YIT 11841]
          Length = 365

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 164/376 (43%), Gaps = 21/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  ++N A   L F  +   F+G NG GKTN+L+A+ FLS  +    +  +  
Sbjct: 1   MILKKISVLNYKNIAQAELAFSPKMNCFIGHNGEGKTNLLDAVYFLSFCKSATHSVDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   FF      E   G   ++   L+ +  +  +  +      + + E    + + 
Sbjct: 61  IRHGED-FFMLQGEYEHESGEPEEVYCGLKRKQKKRFKRNK---KEYKRLSEHIGLVPVV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + SG S ERRRF+D ++   D  +   ++ + R ++ RN LL  E   D + 
Sbjct: 117 LVSPADADLISGGSEERRRFMDMVIVQYDHEYLDALVRYNRALQQRNVLLKQEEEPDEAL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G KI   R   +     +  ++  + +     + L     G+       
Sbjct: 177 IGLWEEMMAQEGEKIYEKRKAYVEEFVPVFQDFYARISRGKEHVGLRYISHGQ------- 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            + +  + +   R  D +   +L G H+ DL +   +  I    GS G+ K  L+ + LA
Sbjct: 230 -RGDLLEVIRRDRAKDRIMGYSLHGVHKDDLEMTLGEFPIKRE-GSQGQNKTYLIALKLA 287

Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL-- 358
               +  T +   P+LLLD+I   LD D+   + ++V+     QIF+T T++   D +  
Sbjct: 288 QFDFLRRTGSRTTPLLLLDDIFDKLDADRVEQIVKLVSGEQFGQIFVTDTNRDHLDRILE 347

Query: 359 --NETAKFMRISNHQA 372
             +E  K   + N + 
Sbjct: 348 KTDEDYKLFYVENGEI 363


>gi|315607883|ref|ZP_07882876.1| recombination protein F [Prevotella buccae ATCC 33574]
 gi|315250352|gb|EFU30348.1| recombination protein F [Prevotella buccae ATCC 33574]
          Length = 372

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 154/375 (41%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L+I  ++N     +    +    +G NGVGKTN L+A+ +LS  R       + +
Sbjct: 1   MVLRKLSIVNYKNIRVTNVDLSPKMNCLIGHNGVGKTNFLDAVYYLSFCRSAFNPVDSQL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G   F        G E    I   ++     + +  + N    + + +    + + +
Sbjct: 61  ITHGEDFFVLEGEYDTGAEDSEQIYCGMKRG---TKKHFKRNKKEYKRLSQHIGLIPLVF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
           + PS   +  G S ERR  LD ++   D  +   +  + + ++ RN LL   +G  D + 
Sbjct: 118 VSPSDTSLIEGASEERRHLLDVVIAQYDRSYMESLAAYNKALQQRNALLKTEDGEPDETL 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E +MA  G  I   R + +  L  +  +  Q  +     +SL      +       
Sbjct: 178 MEIWEEEMARNGELIYEKRNDFVRKLIPVFQDIYQHISQQREIVSLKYVSHCQRGP---- 233

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + +   R  D     +L G HR DL +   D       GS G+ K  ++ + LA
Sbjct: 234 ----LLEVIRRDRFKDRAVGYSLHGVHRDDLEM-LIDGYQLKKEGSQGQNKTFVLALKLA 288

Query: 303 HARLISNTT-GFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360
               + NTT G  P+LLLD+I   LD  +   + ++V+ D   QIF+T T++   D +  
Sbjct: 289 QFNFLKNTTSGTTPLLLLDDIFDKLDAQRVEQIVKLVSGDNFGQIFITDTNRDHLDKILH 348

Query: 361 TA----KFMRISNHQ 371
           ++    K   + N +
Sbjct: 349 SSAMDYKIFAVENGE 363


>gi|307244804|ref|ZP_07526903.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253758|ref|ZP_07535612.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258215|ref|ZP_07539958.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306854249|gb|EFM86455.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863242|gb|EFM95182.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867675|gb|EFM99520.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 360

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 150/370 (40%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +
Sbjct: 1   MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F     R++  +    + I+ +   D     L+IN      + +L   L +  
Sbjct: 61  IHYQAEDF-VLHGRIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           + +RL++ RN  L +     +   
Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+    ++  R +   AL   I +  Q    P +++ ++     +         
Sbjct: 176 PWDIELAKFAETVSQMRAKYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEKGT------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L  G + D     T+IGP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -DYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360
             +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   + +     E
Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346

Query: 361 TAKFMRISNH 370
                ++   
Sbjct: 347 QDSLFQVQQG 356


>gi|218129656|ref|ZP_03458460.1| hypothetical protein BACEGG_01235 [Bacteroides eggerthii DSM 20697]
 gi|317477510|ref|ZP_07936735.1| DNA replication and repair protein RecF [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988386|gb|EEC54709.1| hypothetical protein BACEGG_01235 [Bacteroides eggerthii DSM 20697]
 gi|316906311|gb|EFV28040.1| DNA replication and repair protein RecF [Bacteroides eggerthii
           1_2_48FAA]
          Length = 378

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 152/375 (40%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F  +   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKHISILNYKNLEQVELAFSPKLNTFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R  +  FF      E  +G   +I   ++ R  +  +    N      + +    L + 
Sbjct: 61  IRHDAD-FFVIQGFYEASDGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   +   
Sbjct: 117 MVSPADSALINGGSDERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKNEMPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R E I     +   +    +    K+ L      +       
Sbjct: 177 FLVWEEMMAQAGEVVFRKREEFIKEFIPIFQSFYSFISQDKEKVGLIYDSHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L + R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA
Sbjct: 231 --ASLLEVLKESRTRDQIMGFSLRGVHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGATVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRILHK 347

Query: 359 -NETAKFMRISNHQA 372
                K   +     
Sbjct: 348 VGSDYKMFCVEQGAV 362


>gi|282877403|ref|ZP_06286226.1| DNA replication and repair protein RecF [Prevotella buccalis ATCC
           35310]
 gi|281300455|gb|EFA92801.1| DNA replication and repair protein RecF [Prevotella buccalis ATCC
           35310]
          Length = 405

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 147/375 (39%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N     L F  +    +G NG GKTN+L+A+ +LS  R       + V
Sbjct: 16  MILKKISILNYKNIQVADLTFSPKLNCLIGHNGEGKTNLLDAVYYLSFCRSAFNPIDSQV 75

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F      +  M     I   ++     + +  + N    + + +    + + +
Sbjct: 76  ITHDRDFFVLDGLYLNDMGDEERIYCGMKRG---TRKRFKRNQKEYKRLSQHIGLIPLIF 132

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P+   +  G S  RRRFLD +V  +D  +   +  + + +  RN LL  E   DS+  
Sbjct: 133 VSPADTALIDGGSDARRRFLDMVVSQLDHSYIELLSRYNKALTQRNALLKAEQEPDSALM 192

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E +MA  G  I   R   +     +        +  H  +SL      +        
Sbjct: 193 EILEQEMATQGEAIYAKRDAFVREFIPVFQTIYDHVSGCHETVSLQYISHAQRGP----- 247

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  +   R  D     +L G HR DL +      +    GS G+ K  ++ + LA 
Sbjct: 248 ---LLDVIQRDRHKDRAVGYSLHGVHRDDLEMMIGGYQLKRE-GSQGQNKTYVLALKLAQ 303

Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361
              +    +   P+LLLD+I   LD  +   +  +V  D   QIF+T T++   DS+   
Sbjct: 304 FDFLKRTASSTTPLLLLDDIFDKLDAGRVERIVNMVAGDAYGQIFITDTNRDHLDSILRR 363

Query: 362 ----AKFMRISNHQA 372
                K   +++ + 
Sbjct: 364 HSFDYKLFEVAHGEI 378


>gi|306834801|ref|ZP_07467865.1| recombination protein F [Corynebacterium accolens ATCC 49726]
 gi|304569329|gb|EFM44830.1| recombination protein F [Corynebacterium accolens ATCC 49726]
          Length = 397

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 96/377 (25%), Positives = 168/377 (44%), Gaps = 27/377 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L++ +FR++  L+L      T+FVG NG GKTNI+EA+ + +     R +  + +
Sbjct: 1   MFIRDLDVRDFRSWPELKLELGPGITLFVGRNGFGKTNIVEAVGYTAHLSSHRVSHDSPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+ S   S  A  +G E    + IK       +    QIN   +R   EL   ++  
Sbjct: 61  VRQGAQSARVSLTAVNQGRELTTHLLIK-----PHAANQAQINRTRLRSPRELLGVVKTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176
              P    +  G    RR +LD ++ +  PR      D++++++ RN LL         G
Sbjct: 116 LFSPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASASLRRG 175

Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228
           Y DS      S   + +AQ+A LG ++  AR+ +++AL   I               +  
Sbjct: 176 YGDSDGASALSTLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYAGLAPESRPAHVEY 235

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
              +D    +   A+      +L + R+ +     +L+GPHR DL++   D+       S
Sbjct: 236 KSTIDTSDREVLEAV---MLTELANARQREIERGISLVGPHRDDLVLHLGDQPAK-GFAS 291

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+    G  P+L+LD++ A LD  +R  L   +     Q+ +T
Sbjct: 292 HGETWSYAIALRLAEFELLREEGGSDPVLILDDVFAELDAKRRTQLVH-LAATAEQVLIT 350

Query: 349 -GTDKSVFDSLNETAKF 364
              D+ + D+L    ++
Sbjct: 351 AAVDEDLPDNLEPIVRY 367


>gi|189462141|ref|ZP_03010926.1| hypothetical protein BACCOP_02823 [Bacteroides coprocola DSM 17136]
 gi|189431114|gb|EDV00099.1| hypothetical protein BACCOP_02823 [Bacteroides coprocola DSM 17136]
          Length = 373

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 155/374 (41%), Gaps = 21/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + + F  +    +G NG+GKTN+L+A+ +LS  +    A  +  
Sbjct: 1   MWLKRISILNYKNLEQVEVAFSRKMNCIIGKNGMGKTNLLDAVYYLSFCKSATNAIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  FF      E  EG   ++   L+ R  +  +    N      + +    + + 
Sbjct: 61  ILHDRD-FFVVQGFYETDEGEPEEVYCGLKRRQKKQFKR---NKKEYSRLSDHIGLIPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL      +   
Sbjct: 117 MVSPADSWLIAGGSEERRRFIDVVISQFDREYLEALIRYNKALLQRNSLLKADVEPEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA  G  +   R   I+    +   Y    +    ++SL+            A
Sbjct: 177 MLVWEEMMAASGETVYAKRKAFIDEFIPVFQSYYSYISQDREQVSLSY--------ESHA 228

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            K    ++L + R+ D +   +  G H+ DLI+   D  I    GS G+ K  L+ + LA
Sbjct: 229 AKGNLLEQLKEVRQRDRILGYSTRGIHKDDLIMQLGDFPIKRE-GSQGQNKTYLIALKLA 287

Query: 303 HARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFD---- 356
               +  T +   PI+LLD+I   LD  +   + ++V  D   QIF+T T++   D    
Sbjct: 288 QFEFLKRTGSRTTPIVLLDDIFDKLDASRVEQIVKLVAGDSFGQIFVTDTNRDHLDKILR 347

Query: 357 SLNETAKFMRISNH 370
            +    K   +   
Sbjct: 348 KIEGDYKLFEVDGG 361


>gi|148262088|ref|YP_001228794.1| recombination protein F [Geobacter uraniireducens Rf4]
 gi|189039625|sp|A5GDX3|RECF_GEOUR RecName: Full=DNA replication and repair protein recF
 gi|146395588|gb|ABQ24221.1| DNA replication and repair protein RecF [Geobacter uraniireducens
           Rf4]
          Length = 364

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 166/371 (44%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + +  FRN   + L    +  IF G N  GKTN+LE+I  L   + F+ A  +++
Sbjct: 1   MKLNKIYLLSFRNLEKIELTPAHRFNIFYGKNAQGKTNLLESIFLLGTMKSFKMAKNSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS       + ++G      ++ ++    D+  + ++++   +  VDE   +L +  
Sbjct: 61  VRWGSDQ-----SLIKGWVERDGVTREIALFIDKQGKKIKLDRKSVTKVDEFFGNLNVVV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G+   RR++LDR VF+ D  +     D+ ++++ RN LL  G  + S   
Sbjct: 116 FTPEEINMVRGVPDLRRKYLDRAVFSSDVTYLHAYHDYCKILKNRNILLKSG--EKSGLD 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               ++AE G K+   R++ ++ +  L+ ++    +     + +         +++    
Sbjct: 174 VWTEKLAEYGRKVINKRLDYLHEIQELLSKFYNDISGTEEVVEIRYRPHLMDMENYEKDN 233

Query: 245 -EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
               ++ L      +     TL+GPHR D+      +A+    GS G+Q+  ++ + ++ 
Sbjct: 234 CGALSEALVKCAAEEQRRGTTLVGPHRDDIDFVLNGRALK-QFGSQGQQRSYVLALKMSE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362
              +       PILLLD++++ LD+D+   L   +     Q+F+T T          E  
Sbjct: 293 IDCLHQKFDSPPILLLDDMTSELDQDRNRNLMEFLKKKEMQVFITTTSLQNISLEGIENH 352

Query: 363 KFMRISNHQAL 373
           +   +S  + L
Sbjct: 353 RTFLVSEGKVL 363


>gi|165975460|ref|YP_001651053.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|226737765|sp|B0BRG1|RECF_ACTPJ RecName: Full=DNA replication and repair protein recF
 gi|165875561|gb|ABY68609.1| DNA replication and repair protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
          Length = 360

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/370 (22%), Positives = 151/370 (40%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +
Sbjct: 1   MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F    AR++  +    + I+ +   D     L+IN      + +L   L +  
Sbjct: 61  IHYQAEDF-VLHARIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           + +RL++ RN  L +     +   
Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L   ++  R     AL   I +  Q    P +++ ++     +         
Sbjct: 176 PWDIELAKLAEIVSQMRASYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEKGT------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L  G + D     T+IGP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -DYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360
             +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   + +     E
Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346

Query: 361 TAKFMRISNH 370
                ++   
Sbjct: 347 QDSLFQVQQG 356


>gi|311741697|ref|ZP_07715519.1| recombination protein F [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311303218|gb|EFQ79299.1| recombination protein F [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 391

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/380 (25%), Positives = 164/380 (43%), Gaps = 26/380 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++ +FR++  L +      T+FVG NG GKTNI+EAI + +     R +  A +
Sbjct: 1   MYVRDLDVRDFRSWPELNVQLGPGITLFVGRNGFGKTNIVEAIGYTAHLSSHRVSHDAPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+ S   S  A  +G E    + IK       +    QIN   +R   EL   ++  
Sbjct: 61  VRQGADSARVSITAVNQGRELTTHLLIK-----PHAANQAQINRTRLRSPRELLGVVKTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176
              P    +  G    RR +LD ++ +  PR      D++++++ RN LL         G
Sbjct: 116 LFSPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASGSLRRG 175

Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228
           Y DS      +   + +AQ+A LG ++  AR+ +++AL   I               +  
Sbjct: 176 YSDSDGAAALATLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYSGLAPESRPAHVEY 235

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
              +D    +   A+      +L   R+ +     +L+GPHR DL+++  D+       S
Sbjct: 236 KSTIDTSDREVLEAV---LLTELAAARQREIERGISLVGPHRDDLVLNLGDQPAK-GFAS 291

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +  +   Q+ +T
Sbjct: 292 HGETWSYAIALRLAEFNLLRQEGGSDPVLILDDVFAELDAKRRKQLVHLAAEAE-QVLIT 350

Query: 349 GTDKSVFDSLNETAKFMRIS 368
                      E     R+S
Sbjct: 351 AAVDEDLPGNLEPIVRYRVS 370


>gi|145294046|ref|YP_001136867.1| recombination protein F [Corynebacterium glutamicum R]
 gi|166220708|sp|A4Q9S2|RECF_CORGB RecName: Full=DNA replication and repair protein recF
 gi|140843966|dbj|BAF52965.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 394

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 97/388 (25%), Positives = 171/388 (44%), Gaps = 31/388 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L + ++R++  L++  +   T+F+G NG GKTNI+EAI +L+     R +S A +
Sbjct: 1   MHIRSLELRDYRSWPELKVDLEPGITVFIGRNGFGKTNIVEAIGYLAHLSSHRVSSDAPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R  + +   S  A  +G E  A + IK       +     +N   +R   EL   ++  
Sbjct: 61  VRAHAENARVSAVAVNQGRELAAHLLIK-----PHAANQASLNRTKVRTPRELLGVVKTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174
              P    +  G   ERRR+LD ++    PR      D++++++ RN LL          
Sbjct: 116 LFAPEDLALVKGEPAERRRYLDDIIATRQPRMAGVKADYDKVLKQRNALLKTATIALRRG 175

Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV---QKENFPHI--- 224
               EG    S   + + Q+A LG ++  AR  ++N L   I E       E+ P     
Sbjct: 176 YGTEEGAAALSTLDTWDGQLARLGAEVMAARFALLNELGPKIYEAYTTIAPESRPAAVNY 235

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
           K ++   L    +     ++     +L   R+ +     +L+GPHR D+ +   D+    
Sbjct: 236 KTTIDQGLSQFSEFDAGIIEATLLTELAAKRQREIERGSSLVGPHRDDVDLMLGDQPAK- 294

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
              S GE     + + +A   L+  +    PIL+LD++ + LD  +R  L  I  ++  Q
Sbjct: 295 GFASHGETWSFALSLRIAEFNLLK-SDDTDPILILDDVFSELDAGRRQKLVGIAQEVE-Q 352

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQA 372
           + +T    +V D L E  K +  + H  
Sbjct: 353 VLITA---AVHDDLPENLKKVLTAQHTV 377


>gi|167765194|ref|ZP_02437307.1| hypothetical protein BACSTE_03580 [Bacteroides stercoris ATCC
           43183]
 gi|167696822|gb|EDS13401.1| hypothetical protein BACSTE_03580 [Bacteroides stercoris ATCC
           43183]
          Length = 378

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 153/375 (40%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F  +   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEQVELAFSPKLNTFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R  S  FF      E  +G   +I   ++ R  +  +    N      + +    L + 
Sbjct: 61  IRHDSD-FFVIQGFYEAADGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + SG S ERRRF+D ++   D  +   +I + + +  RN LL  E   +   
Sbjct: 117 MVSPADSVLISGGSDERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKSEMPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R E I     +   +    +    K+ LT     +       
Sbjct: 177 FLVWEEMMAQAGEVVFHKREEFIREFIPIFQSFYSFISQDKEKVGLTYDSHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                   L + R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA
Sbjct: 231 --ASLLAVLKENRMRDQIMGFSLRGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRILHK 347

Query: 359 -NETAKFMRISNHQA 372
                K  R+     
Sbjct: 348 VGSDYKMFRVEKGNI 362


>gi|134096624|ref|YP_001102285.1| recombination protein F [Saccharopolyspora erythraea NRRL 2338]
 gi|291005722|ref|ZP_06563695.1| recombination protein F [Saccharopolyspora erythraea NRRL 2338]
 gi|166221860|sp|A4F5N5|RECF_SACEN RecName: Full=DNA replication and repair protein recF
 gi|133909247|emb|CAL99359.1| DNA replication and repair protein [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 391

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 162/396 (40%), Gaps = 37/396 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR++    L F+   T+ VG NG GKTN++EA+ +++     R A+ A +
Sbjct: 1   MYVRHLQVTDFRSWPHADLTFEPGPTVLVGSNGQGKTNLVEALGYVATLGSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       A V       ++ ++LE    ++ R         +  D L   LR   
Sbjct: 61  VRYGTQRAVVRAAVVN---HGRELLVELEITPGKANRARINRGAAGKPRDVL-GILRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR+     D++R++R R+ LL           
Sbjct: 117 FAPEDMAMVRGDPGERRRFLDDLLVARAPRYAGVRSDYDRVLRQRSALLKSAGAAKRGGS 176

Query: 179 --DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK---------LS 227
             D       +  +A  G ++   R++++ A++  +            +         + 
Sbjct: 177 GGDLRTLEVWDGHLARYGAELLAGRLDLVAAIAPHVTSAYANVAATAEETAPSGRVADVR 236

Query: 228 LTGFLDGKFDQSF----------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
               L     + +            L++    +L   R  +     +L+GPHR DL +  
Sbjct: 237 YRSSLGESLPEGYGVPRGEPADVEVLEKALLAELERVRAQELERGVSLVGPHRDDLELML 296

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
            +      + S GE     + + LA   L++   G  P+L+LD++ A LD  +R+ L  +
Sbjct: 297 GELPAK-GYASHGESWSFALALRLASYHLLAE-DGAEPVLILDDVFAELDRRRRSRLAEL 354

Query: 338 VTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372
           V     Q+ +T    + V + L  T     +   + 
Sbjct: 355 VAGAE-QVLVTAAVAEDVPEEL--TGVRFDVREGEV 387


>gi|325851995|ref|ZP_08171078.1| DNA replication and repair protein RecF [Prevotella denticola CRIS
           18C-A]
 gi|325484551|gb|EGC87467.1| DNA replication and repair protein RecF [Prevotella denticola CRIS
           18C-A]
          Length = 368

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 156/375 (41%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N  +  L    +   F+G NG GKTN+L+A+ +LS  +       ++V
Sbjct: 1   MQLDRLSIINYKNIQTATLNLSGKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +  FF          G  +       R  +  +  + N    R + +    L + +
Sbjct: 61  MRHDAD-FFVLEGDYTTDTGEQEQVYCGMKRGAK--KHFKRNKKEYRRLSQHIGRLPLIF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P+   +  G S ERRR +D ++   D  +   +  + + ++ RN LL  E   D +  
Sbjct: 118 VSPADATLIEGGSEERRRLMDVVISQYDTPYIESLGRYNKALQQRNSLLKQEEEPDPTLM 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E QMAE G  +   R   +  L+       Q  +    ++SL      +        
Sbjct: 178 ELLEMQMAEHGEAVYRKRAAFVQELTPCFRRIYQTISNNREQVSLEYVSHCQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +      +   R  D +   +L G H+ DL++      +    GS G+ K  ++ + LA 
Sbjct: 230 RGSLLDIIQRDRVKDRIMGFSLHGTHKDDLMMKLGGYPMKRE-GSQGQNKTYVLALKLAQ 288

Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361
              +     G  P+LLLD+I   LD  +   + R+V+ D   QIF+T T++   D + + 
Sbjct: 289 FDFLRRTAGGRTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFGQIFITDTNREHLDKILQG 348

Query: 362 A----KFMRISNHQA 372
           +    K   +   + 
Sbjct: 349 SGFSYKLFSVEGGEI 363


>gi|330827703|ref|YP_004390655.1| DNA replication and repair protein recF [Aeromonas veronii B565]
 gi|328802839|gb|AEB48038.1| DNA replication and repair protein recF [Aeromonas veronii B565]
          Length = 367

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 90/370 (24%), Positives = 153/370 (41%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S+FRN     L       I VG NG GKT++LEAI +L  GR FR      V
Sbjct: 1   MSLVKLQLSDFRNIQQASLKLSPGLNILVGCNGSGKTSVLEAIHYLGLGRSFRTHLTGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G    F+ FA+ E       I +    +D      L+I     + + +L + L +  
Sbjct: 61  IRQG-ERAFTLFAQCELEGRQVPIGL---AKDKSGETQLKIAGAQAQRLADLVELLPVQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR +LD  VF  +P          RL++ RN LL +        +
Sbjct: 117 IHPDGFNLLTGGPQARRAWLDWGVFHQEPTFFALWGRVRRLLKQRNALLRQST-QYRQLA 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  LG ++   R     A++ LI E    +  P   +SL  +   + D     L 
Sbjct: 176 FWDQELVRLGGELAEFRASYCQAITPLIKEMTA-DFLPEFDISLGFYRGWEKDTPLGDL- 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L  G + D     T +GP ++D+ +   +        S G+ K+++  + LA  
Sbjct: 234 ------LEAGFERDRALGYTGVGPQKADVRLK-ANGVPAQDILSRGQLKLLVCAMRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--TA 362
             ++  +    I L+D+ ++ LD DKR  L   +    SQ+F+T  D      + +    
Sbjct: 287 LYLNQHSSRGCIFLIDDFASELDVDKRRLLAARLKQCASQVFITAIDTGQLADMMDANDC 346

Query: 363 KFMRISNHQA 372
           K   +   + 
Sbjct: 347 KLFHVEQGKI 356


>gi|237801662|ref|ZP_04590123.1| recombination protein F [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024521|gb|EGI04577.1| recombination protein F [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 367

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +    RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYDQPSC-TVFGQVDLAQGGHSNLGV---ARDRQGDFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDVASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++ +   +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCQASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LDE  R AL R++ ++  Q+F+T  D+         + 
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDEHHRQALCRLLEELRCQVFITCVDQEFLREGWQTDT 347

Query: 361 TAKFMRISNHQALC 374
                 + + +   
Sbjct: 348 PVALFHVEHGRITQ 361


>gi|53712250|ref|YP_098242.1| DNA replication and repair protein RecF [Bacteroides fragilis
           YCH46]
 gi|253563714|ref|ZP_04841171.1| DNA replication and repair protein recF [Bacteroides sp. 3_2_5]
 gi|265762438|ref|ZP_06091006.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_16]
 gi|81690735|sp|Q64XR8|RECF_BACFR RecName: Full=DNA replication and repair protein recF
 gi|52215115|dbj|BAD47708.1| DNA replication and repair protein RecF [Bacteroides fragilis
           YCH46]
 gi|251947490|gb|EES87772.1| DNA replication and repair protein recF [Bacteroides sp. 3_2_5]
 gi|263255046|gb|EEZ26392.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_16]
          Length = 370

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 156/375 (41%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E M+G   +I   ++ R  +  +    N      + +    + + 
Sbjct: 61  IRHEQD-FFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKR---NKKEYSRLSDHIGFIPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   +   
Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPIEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I+    +   +    +    ++ LT     +       
Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHAR------- 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L + R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA
Sbjct: 230 -NASLLEVLKESRVRDKIMGYSLRGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILYK 347

Query: 359 -NETAKFMRISNHQA 372
                K  R+ +   
Sbjct: 348 VGSDYKMFRVESGAI 362


>gi|330961507|gb|EGH61767.1| recombination protein F [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 367

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 162/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   P+  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPAC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPMQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCLASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLNRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LDE  R AL R++ ++  Q+F+T  D+         + 
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDEHHRQALCRLLEELRCQVFITCVDQEFLREGWQTDT 347

Query: 361 TAKFMRISNHQALC 374
                 + + +   
Sbjct: 348 PVALFHVEHGRITQ 361


>gi|261868625|ref|YP_003256547.1| recombination protein F [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413957|gb|ACX83328.1| DNA replication and repair protein RecF [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 358

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 157/372 (42%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN  ++ L  D      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLTVENFRNLQAVDLELDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDQP-HFTLFGQIQEQQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F              RL++ RN  L + Y   S   
Sbjct: 117 ITPEGLNLLNGGPSYRRAFLDWGLFHHHVAFYNLWASLNRLLKQRNAALQQTYA-YSQMK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ +L  +++  R +   AL   I E   +   P + +S++     + +Q      
Sbjct: 176 IWDMELVKLAEQVSQLRADYALALQPEI-EQTCRLFLPELDISVSFHQGWEKEQ------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA+ L    + D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -HYAELLERNFERDRALGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMSALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             +        I L+D+ ++ LD+ KR  L   + + GSQ+F+T  T   + +   +  +
Sbjct: 287 EHLMRQKQRHCIFLIDDFASELDQTKRRLLAERLQNSGSQVFVTAITSNQLKEMQPKKHR 346

Query: 364 FMRISNHQALCI 375
             +I   +   +
Sbjct: 347 TFKIDTGKIALL 358


>gi|329121617|ref|ZP_08250238.1| recombination protein F [Dialister micraerophilus DSM 19965]
 gi|327468772|gb|EGF14249.1| recombination protein F [Dialister micraerophilus DSM 19965]
          Length = 356

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 8/350 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK   + + RN+ ++ +  D   TIF G NG GKTN+LE+++  S G+ FR     ++
Sbjct: 1   MKIKKFRLIQVRNFENIEIETDKNITIFTGKNGAGKTNLLESVNLASFGKSFRTNKDEEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +       +      G     +I IK+   + +    + +N+  I+  D L    +   
Sbjct: 61  IKFDKNECTTILTFNSGKSN-HEIKIKISKTNGKQ---IFLNENRIKNKD-LVGIFKTVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182
             P   ++  G   +RRRFLD  +  I+PR+    I+++R ++ RN  L           
Sbjct: 116 FNPDEMQLIKGNPQKRRRFLDMEISQINPRYYYEWINYKRAVQQRNAELKNAQIRGIKPQ 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+A+    I   R+E I  L+  I +  +        L L              
Sbjct: 176 TDLWDMQIAKGAAYIVRKRIEAIQKLNESIEKTEEILTKNRENLKLYYIQKESKKNETNF 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E Y  KL + R++D    +T +GPHR D++     K I+  +GS G+Q+  ++ I L+
Sbjct: 236 DVEWYIHKLLEKRQVDIKFCQTSVGPHRDDILFLLNGKDIS-KYGSQGQQRTAILSIKLS 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
               I   TG  P+LLLD++ + LD +++  LF  V +   Q  MT T+K
Sbjct: 295 EMEFIKKETGEYPVLLLDDVGSELDRERKKVLFEYVKEKDIQTIMTMTEK 344


>gi|329957035|ref|ZP_08297603.1| DNA replication and repair protein RecF [Bacteroides clarus YIT
           12056]
 gi|328523792|gb|EGF50884.1| DNA replication and repair protein RecF [Bacteroides clarus YIT
           12056]
          Length = 422

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 89/376 (23%), Positives = 154/376 (40%), Gaps = 20/376 (5%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
            + +K ++I  ++N   + L F  +   F G NG+GKTN+L+A+ FLS  +       + 
Sbjct: 44  HMILKRISILNYKNLEQVELAFSPKLNTFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQ 103

Query: 64  VTRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
             R  +  FF      E  +G   +I   ++ R  +  +    N      + +    L +
Sbjct: 104 NIRHDAD-FFVIQGFYEAADGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPL 159

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSS 181
             + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   +  
Sbjct: 160 VMVSPADSALINGGSDERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKSETPVEEE 219

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                E  MA+ G  +   R E I     +   +    +    K+ LT     +      
Sbjct: 220 LFLVWEEMMAQAGEVVFRKREEFIREFIPIFQSFYSFISQDKEKVGLTYDSHARD----- 274

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
                  + L + R  D +   +L G H+ +L +   D  I    GS G+ K  LV + L
Sbjct: 275 ---ASLLEVLKESRTRDQIMGFSLRGVHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKL 330

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL-- 358
           A    +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +  
Sbjct: 331 AQFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRILH 390

Query: 359 --NETAKFMRISNHQA 372
                 K  R+     
Sbjct: 391 KVGSDYKMFRVEKGAV 406


>gi|227502244|ref|ZP_03932293.1| recombination protein F [Corynebacterium accolens ATCC 49725]
 gi|227077068|gb|EEI15031.1| recombination protein F [Corynebacterium accolens ATCC 49725]
          Length = 396

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 95/377 (25%), Positives = 167/377 (44%), Gaps = 27/377 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L++ +FR++  L+L      T+FVG NG GKTNI+EA+ + +     R +  + +
Sbjct: 1   MFIRDLDVRDFRSWPELKLELGPGITLFVGRNGFGKTNIVEAVGYTAHLSSHRVSHDSPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+ S   S  A  +G E    + I+       +    QIN   +R   EL   ++  
Sbjct: 61  VRQGAQSARVSLTAVNQGRELTTHLLIQ-----PHAANQAQINRTRLRSPRELLGVVKTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176
              P    +  G    RR +LD ++ +  PR      D++++++ RN LL         G
Sbjct: 116 LFSPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASASLRRG 175

Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228
           Y DS      S   + +AQ+A LG ++  AR+ +++AL   I               +  
Sbjct: 176 YGDSDGASALSTLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYAGLAPESRPAHVEY 235

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
              +D    +   A+      +L   R+ +     +L+GPHR DL++   D+       S
Sbjct: 236 KSTIDTSDREVLEAV---MLTELASARQREIERGISLVGPHRDDLVLHLGDQPAK-GFAS 291

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+    G  P+L+LD++ A LD  +R  L   +     Q+ +T
Sbjct: 292 HGETWSYAIALRLAEFELLREEGGSDPVLILDDVFAELDAKRRTQLVH-LAATAEQVLIT 350

Query: 349 -GTDKSVFDSLNETAKF 364
              D+ + D+L    ++
Sbjct: 351 AAVDEDLPDNLEPIVRY 367


>gi|301161961|emb|CBW21505.1| putative DNA replication and repair protein [Bacteroides fragilis
           638R]
          Length = 370

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 156/375 (41%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEQVELNFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSAGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E M+G   +I   ++ R  +  +    N      + +    + + 
Sbjct: 61  IRHEQD-FFVIQGFYEAMDGTPEEIYCGMKRRSKKQFKR---NKKEYSRLSDHIGFIPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   +   
Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQPIEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I+    +   +    +    ++ LT     +       
Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFISEFIPIFQSFYSYISQDKEQVGLTYESHAR------- 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L + R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA
Sbjct: 230 -NASLLEVLQESRVRDKIMGYSLRGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGSTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILYK 347

Query: 359 -NETAKFMRISNHQA 372
                K  R+ +   
Sbjct: 348 VGSDYKMFRVESGAI 362


>gi|313900878|ref|ZP_07834368.1| DNA replication and repair protein RecF [Clostridium sp. HGF2]
 gi|312954298|gb|EFR35976.1| DNA replication and repair protein RecF [Clostridium sp. HGF2]
          Length = 366

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 159/370 (42%), Gaps = 9/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  FRNYA + + F     I  G N  GKTN+LE+I +LS  R  R +   D+
Sbjct: 1   MRLESLRLHNFRNYADVNVSFTDGIHILTGKNAQGKTNLLESILYLSTTRSHRTSEDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +FF   A +   +   +I + +    +   + L I    +  V +         
Sbjct: 61  IKEGEQAFF-IKALIAKEQKTEEIRVTV----NEKGKNLFIYQNPVNRVSDFIGEFNSVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +F      RRRF+D  +  I  ++   +    RL++ RN  L +   D S+  
Sbjct: 116 FCPDDMNLFQASPRVRRRFVDMELSKISKKYVSTLYVATRLLKERNAYLKQERVDRSYLE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            + +Q+ +  V I   R   +  L      + ++ +     +++       F  S  ALK
Sbjct: 176 VLTSQLVDASVVIMKQRHFFLEELLDKCRTFYRQLSNDDTDITVRYLSCVPFSDSEEALK 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E   KK    +  D + ++T  G H+ D I +     + ++  S G+++ VL+ + +   
Sbjct: 236 EALLKKYQKHQDRDLLLKQTTAGIHKEDFIFEMNGHEL-VSFASQGQKRSVLLALKIGMI 294

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL--NETA 362
            +I       P+LLLD++ + LD  ++  L + +     QIF++ TD    D +  +   
Sbjct: 295 HMIHEIIQEYPVLLLDDVFSELDSYRKQELLKSLPK-EVQIFISTTDFVEMDDMKSDRRV 353

Query: 363 KFMRISNHQA 372
               +SN   
Sbjct: 354 TLWNVSNGTI 363


>gi|333030065|ref|ZP_08458126.1| DNA replication and repair protein recF [Bacteroides coprosuis DSM
           18011]
 gi|332740662|gb|EGJ71144.1| DNA replication and repair protein recF [Bacteroides coprosuis DSM
           18011]
          Length = 372

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/378 (24%), Positives = 161/378 (42%), Gaps = 20/378 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  +++  ++N   + L F  +   F+G+NG+GKTNIL+ I +LS  +       +  
Sbjct: 1   MVITHISVLNYKNLEEVELEFSPKLNCFLGENGMGKTNILDTIYYLSFCKSSINPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G   FF      + + G   ++   L+ R  +  +  +        + +    + + 
Sbjct: 61  IKHGED-FFVIQGFYDSLSGEIEEVYCGLKRRKKKQFKRNK---KEYTRLSDHIGLVPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P   R+  G S ERR+F+D ++   D  +   +I + + M+ RN LL  E   D   
Sbjct: 117 MVSPDDARLIDGGSDERRKFMDMVISQYDKDYLSALIQYNKAMQQRNSLLKSENPIDPQL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S +E  MAE G+ +   R + I     L  EY    +     +SL+   D K       
Sbjct: 177 FSVLEELMAESGIVVYKKRAQFIEEFIPLFQEYYSSISQDKESVSLSYDSDLK------- 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            + +    L + R  D +   +L G H+ DLI+   D +I    GS G+ K  LV + LA
Sbjct: 230 -ENDLLTLLKESRARDLIMGYSLKGIHKDDLIMSLGDFSIK-KEGSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361
               +       P+LLLD+I   LD  +   +  +V  +   QIF+T T++S  + +   
Sbjct: 288 QFSFLRKINNKTPLLLLDDIFDKLDALRVEQIMHLVAGEEFGQIFITDTNRSHLEKILHK 347

Query: 362 ----AKFMRISNHQALCI 375
                K   +       +
Sbjct: 348 VKSDYKLFMVKGGAVDLL 365


>gi|330898606|gb|EGH30025.1| recombination protein F [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 367

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 162/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
              F  +   +   
Sbjct: 348 PVAFFHVEQGRITQ 361


>gi|327312442|ref|YP_004327879.1| DNA replication and repair protein RecF [Prevotella denticola
           F0289]
 gi|326946310|gb|AEA22195.1| DNA replication and repair protein RecF [Prevotella denticola
           F0289]
          Length = 368

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 158/375 (42%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+I  ++N  +  L   A+   F+G NG GKTN+L+A+ +LS  +       ++V
Sbjct: 1   MQLDRLSIINYKNIQTATLNLSAKLNCFIGHNGEGKTNLLDAVYYLSFCKSAFNPKDSEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +  FF          G  +       R  +  +  + N    R + +    L + +
Sbjct: 61  MRHDAD-FFVLEGDYTTDTGEQEQVYCGMKRGAK--KHFKRNKKEYRRLSQHIGRLPLIF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P+   +  G S ERRR +D ++   D  +   +  + + ++ RN LL  E   D +  
Sbjct: 118 VSPADATLIEGGSEERRRLMDVVISQYDTPYIESLGRYNKALQQRNSLLKQEEEPDPTLM 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E QMAE G  +   R   +  L+ +     Q  +    ++SL      +        
Sbjct: 178 ELLEMQMAEHGEAVYRKRAAFVQELTPVFRRIYQTISNNREQVSLEYVSHCQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +      +   R  D +   +L G H+ DL++      +    GS G+ K  ++ + LA 
Sbjct: 230 RGSLLDIIQRDRVKDRIMGFSLHGTHKDDLMMKLGGYPMKRE-GSQGQNKTYVLALKLAQ 288

Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361
              +     G  P+LLLD+I   LD  +   + R+V+ D   QIF+T T++   D + + 
Sbjct: 289 FDFLCRTAGGRTPLLLLDDIFDKLDSSRVEQIVRLVSGDDFGQIFITDTNREHLDKILQG 348

Query: 362 A----KFMRISNHQA 372
           +    K   +   + 
Sbjct: 349 SGFSYKLFSVEGGEI 363


>gi|197106846|ref|YP_002132223.1| recombinational DNA repair ATPase [Phenylobacterium zucineum HLK1]
 gi|196480266|gb|ACG79794.1| recombinational DNA repair ATPase [Phenylobacterium zucineum HLK1]
          Length = 377

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 136/374 (36%), Positives = 207/374 (55%), Gaps = 10/374 (2%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R  +  L++++FR+YAS  L  D +     G NG GKTN+LEA+SFL PGRG R AS A+
Sbjct: 2   RTALTRLSLTDFRSYASAELALDGRPVWLAGPNGSGKTNLLEAVSFLIPGRGLRGASIAE 61

Query: 64  VTRI--GSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           V R   G      ++  A V        +   +E +   S R ++++         L +H
Sbjct: 62  VGRRLPGETVGRAWAVSATVAAAGDEVRLGTGVE-QPGASRRVVRVDGEPA-PPGRLAEH 119

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           +R  WL P+ DR+F   + ERRRFLDR+VFA +P H   +  +E+ MR R RLLTEG  D
Sbjct: 120 MRQVWLTPAQDRLFLEGAGERRRFLDRLVFAAEPGHAAHVQAYEKAMRERMRLLTEGPAD 179

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238
            +W  ++EA++AE G  +  +R   + AL++ I    ++  FP  +LSLTG  +    + 
Sbjct: 180 PTWLDALEARLAEAGALMADSRSRTLAALAAEIGARGER-PFPQARLSLTGAWEQMAAEG 238

Query: 239 -SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                ++   A+ L + R  D+ + R L GPHR DL V + +K    A  STGEQK +++
Sbjct: 239 AGIADVEARLARALREARDRDAAAGRALTGPHRGDLAVVHAEKDRAAAECSTGEQKALIL 298

Query: 298 GIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
            + LA A  ++       P+LLLDE++AHLD  +R ALF  +  +G Q F+TGTD+ +F+
Sbjct: 299 NLVLAQAARLARADSAPAPVLLLDEVAAHLDRVRRAALFDEIEALGLQAFLTGTDEHLFE 358

Query: 357 SLNETAKFMRISNH 370
           +L    +  R+   
Sbjct: 359 ALAGRGQGWRMDAG 372


>gi|99079844|ref|YP_611998.1| recombination protein F [Ruegeria sp. TM1040]
 gi|99036124|gb|ABF62736.1| DNA replication and repair protein RecF [Ruegeria sp. TM1040]
          Length = 357

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 132/357 (36%), Positives = 193/357 (54%), Gaps = 11/357 (3%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
           S FR++    L  D +     G+NG GKTNILEA+S  SPGRG RRAS AD+ R      
Sbjct: 2   SHFRSHLRADLHLDTRPVAIHGNNGAGKTNILEAVSLFSPGRGLRRASAADMARQPEALG 61

Query: 73  FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
           +     ++      ++    E  + R V+     D        L +  R+ WLVP+MDR+
Sbjct: 62  WKLRGVLQSSGQAYEVETSSEVGNARQVKI----DNKSASQVALGRIARVVWLVPAMDRL 117

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
           +   +  RRRFLDR+  + DP H    + +E+ MR RNRLL +   D++W   +E QMAE
Sbjct: 118 WIEGAEGRRRFLDRIALSFDPDHAEASLSYEKAMRERNRLLKDNVRDAAWYRVLEGQMAE 177

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
            G +I+ AR++ +  L++   +   +  FP  +L L      + +    A  E   + L 
Sbjct: 178 TGFRIHQARMDAVARLTA--AQAEAETAFPVAQLQL-----VQAEGDMPASAEALREMLD 230

Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
            GR  D    RTL+GPHRSDLI  +  K +     STGEQK +LV + LA+AR +    G
Sbjct: 231 AGRMRDLTVGRTLVGPHRSDLIGTFLAKGLPAKDCSTGEQKALLVSLILANARALQAQEG 290

Query: 313 FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
            APILLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L   A+ + +S+
Sbjct: 291 AAPILLLDEVAAHLDAGRRAALYDEICALGTQAWMTGTGPELFQELGSRAQHLTVSD 347


>gi|222053120|ref|YP_002535482.1| DNA replication and repair protein RecF [Geobacter sp. FRC-32]
 gi|254790478|sp|B9M7S3|RECF_GEOSF RecName: Full=DNA replication and repair protein recF
 gi|221562409|gb|ACM18381.1| DNA replication and repair protein RecF [Geobacter sp. FRC-32]
          Length = 364

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 167/371 (45%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + +  FRN     L+      IF G+NG GKTN+LE+I  ++  + F+ A  +D+
Sbjct: 1   MKLNKIYLQSFRNLQETMLMPAQHFNIFYGNNGQGKTNLLESIFIMATMKSFKTARSSDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       + ++G      ++ ++    D   + ++++   +  +D+   HL +  
Sbjct: 61  VRWGA-----ISSLLKGWVERDGVTREIAVFLDNQGKKIRVDQKAVTRIDDFFGHLNVVV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  GL   RR++LDR VF+ D  +      + ++++ RN LL  G  + +   
Sbjct: 116 FTPEEVNMVKGLPELRRKYLDRAVFSSDITYLSVYHAYSKILKNRNMLLKRG--EKASFD 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-LDGKFDQSFCAL 243
               ++ E G  I ++R+  ++AL  L+  + ++ +     + ++              +
Sbjct: 174 IWTEKLVEQGKNIILSRLAYLDALRDLLKRFYREISGNEEAVDISYRPYHMDLADCRGDV 233

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            + +A+ L      +     TL GPHR D+      + +    GS G+QK  ++ + +A 
Sbjct: 234 ADAFAEALAKTATEEERRGTTLAGPHRDDVEFILNGRPLK-QFGSQGQQKSYVLALKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETA 362
              +       PI LLD++S+ LD++++  L   +     Q+F+T T     +    E  
Sbjct: 293 TEYLQKKFHSQPIFLLDDLSSELDQERKKNLMEFLKKRDMQVFITTTSLQNINVDEIENY 352

Query: 363 KFMRISNHQAL 373
           +  RI   + L
Sbjct: 353 RTYRIEEGKVL 363


>gi|327482927|gb|AEA77334.1| DNA recombination and repair protein RecF [Vibrio cholerae
           LMA3894-4]
          Length = 357

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 81/361 (22%), Positives = 151/361 (41%), Gaps = 12/361 (3%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    + +     
Sbjct: 2   IQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRIIQNECSE 61

Query: 72  FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130
            F      E         + +     R     ++I     + + +L + L +  + P   
Sbjct: 62  LFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQLIHPEGF 121

Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190
            + +    +RR F+D  VF  +P        F+RL + RN LL          S  + ++
Sbjct: 122 ELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-LSYWDQEL 180

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           A L  +I+  R   +N L   + E + +   P   + L  +   + DQ        Y   
Sbjct: 181 ARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWEKDQP-------YQSI 232

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
           L    + D     T  GP+++DL +      +     S G+   ++  + +A  + ++  
Sbjct: 233 LEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLFKMVCALRVAQGQHLTEL 291

Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRISN 369
           TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V D L+E++K   +++
Sbjct: 292 TGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQVADMLDESSKTFHVAH 351

Query: 370 H 370
            
Sbjct: 352 G 352


>gi|132245|sp|P24718|RECF_ACTPL RecName: Full=DNA replication and repair protein recF
 gi|38953|emb|CAA45173.1| RecF [Actinobacillus pleuropneumoniae]
          Length = 360

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 82/370 (22%), Positives = 150/370 (40%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +
Sbjct: 1   MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F    AR++  +    + I+ +   D     L+IN      + +L   L +  
Sbjct: 61  IHYQAEDF-VLHARIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           + +RL++ RN  L +     +   
Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L   ++  R      L   I +  Q    P +++ ++     +         
Sbjct: 176 PWDIELAKLAEIVSQMRASYAEGLRPEIEKTCQ-FFLPELEIGVSFHQGWEKGT------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L  G + D     T+IGP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -DYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360
             +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   + +     E
Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346

Query: 361 TAKFMRISNH 370
                ++   
Sbjct: 347 QDSLFQVQQG 356


>gi|289677552|ref|ZP_06498442.1| recombination protein F [Pseudomonas syringae pv. syringae FF5]
          Length = 367

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++IN    R   +L + L + 
Sbjct: 61  IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRINGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|147676338|ref|YP_001210553.1| recombination protein F [Pelotomaculum thermopropionicum SI]
 gi|189039631|sp|A5D6E6|RECF_PELTS RecName: Full=DNA replication and repair protein recF
 gi|146272435|dbj|BAF58184.1| recombinational DNA repair ATPase [Pelotomaculum thermopropionicum
           SI]
          Length = 364

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 156/373 (41%), Gaps = 15/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRN+A   +       +  G N  GKTNILE+I     GR FR A   ++
Sbjct: 1   MLLRRLEMLNFRNFARQAVEPGLYFNVLSGRNAQGKTNILESIYLACTGRSFRTAREKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F S     E      ++ + L        + +++N V+            +  
Sbjct: 61  IKR-EKEFSSIRCLFETRGREVEVKVTLVP----GRKRIEVNGVL--KSGHPFGWPGVVL 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
             P    +  G   ERRRFLD  +    P +   +  + R++  RN LL E     +   
Sbjct: 114 FTPDDLVMIKGSPAERRRFLDYDLGPFHPHYAHCLDRYNRVLSQRNALLREAKEKRTTGG 173

Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQS 239
                + Q+   G ++   RV ++      I    ++  E   +I++S    L    +  
Sbjct: 174 PLEVWDEQLCRYGSRLLFLRVSLLKKFFPAIRALHRELTEGAENIEISYLSSLKIGEECG 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              + E ++ +L   R  +    +TL+GPHR DL +        + + S G+Q+ +++ +
Sbjct: 234 EDEIYERFSGELRLVRDEEIARMQTLVGPHRDDLHIKVDGHDARV-YCSQGQQRTIVLTL 292

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            +       + TG  PILLLD++   LD+++R AL   +  +  Q F+T T +  FD   
Sbjct: 293 KVFLIEQWRSETGEYPILLLDDVLFELDDNRREALMCRLGGL-VQTFLTCT-RVNFDIEG 350

Query: 360 ETAKFMRISNHQA 372
             AK   +S  + 
Sbjct: 351 FKAKVFTVSGGEV 363


>gi|307260453|ref|ZP_07542148.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869856|gb|EFN01638.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 367

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 82/370 (22%), Positives = 151/370 (40%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN  SL L         VG NG GKT++LEA+ +L  GR F+      +
Sbjct: 8   MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAVFYLGHGRSFKSHISNRI 67

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F    AR++  +    + I+ +   D     L+IN      + +L   L +  
Sbjct: 68  IHYQAEDF-VLHARIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 123

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           + +RL++ RN  L +     +   
Sbjct: 124 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 182

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L   ++  R     AL   I +  Q    P +++ ++     +         
Sbjct: 183 PWDIELAKLAEIVSQMRASYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEKGT------ 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L  G + D     T+IGP ++D         +     S G+ K+++  + LA  
Sbjct: 236 -DYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 293

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360
             +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   + +     E
Sbjct: 294 EYLVAQKERQCLFLIDDFASELDPIKRELLAYRLRESGSQVFVTAITKDQLNQMQWQESE 353

Query: 361 TAKFMRISNH 370
                ++   
Sbjct: 354 QDSLFQVQQG 363


>gi|111219509|ref|YP_710303.1| recombination protein F [Frankia alni ACN14a]
 gi|122954749|sp|Q0RUP6|RECF_FRAAA RecName: Full=DNA replication and repair protein recF
 gi|111147041|emb|CAJ58688.1| DNA replication and repair protein recF [Frankia alni ACN14a]
          Length = 378

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 91/384 (23%), Positives = 161/384 (41%), Gaps = 24/384 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+Y SL L         VG NG GKTN++EAI +++     R ++ A +
Sbjct: 1   MHLTHLSLVDFRSYPSLDLTLGPGVVTLVGRNGQGKTNLIEAIGYVATLASHRVSADAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ S     AR+   +  A   ++LE    R+ R  ++N   +    ++   L    
Sbjct: 61  VRQGA-SHAVVRARIVRGDRAA--LVELEIVPGRANRA-RLNRAPVPRPRDVLGLLCTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P    +  G    RR+FLD ++ A  PR    + D++R+++ R+ LL          G
Sbjct: 117 FAPEDLALVKGDPAGRRQFLDELLVARTPRMAAVLADYDRVLKQRSTLLRTAGAARRAGG 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP------HIKLSLTG 230
             D       +  +A  G ++  AR+ ++ AL   +                  + S+  
Sbjct: 177 KGDLRTLDVWDGYLASYGAELLTARLALVEALRPGVAGAYAAVAGAQAAVGFEYRASVPQ 236

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                        +E    +L   R  +    +TL+GPHR DL++   D      + S G
Sbjct: 237 PAPDPVRPDRERWEEAIRAELVAARPREIERGQTLVGPHRDDLLLTV-DGLPARGYASHG 295

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349
           E   + + + LA   L+       P+LLLD++ A LD  +R+ L  +V     Q+ +T  
Sbjct: 296 ESWSLALALRLASFELL-RADDREPVLLLDDVFAELDVQRRSRLAELVAPAE-QVLVTAA 353

Query: 350 TDKSVFDSLNETAKFMRISNHQAL 373
            +  V   L  T     ++  + L
Sbjct: 354 VEADVPAEL--TGTRYVVAAGEVL 375


>gi|325297260|ref|YP_004257177.1| DNA replication and repair protein recF [Bacteroides salanitronis
           DSM 18170]
 gi|324316813|gb|ADY34704.1| DNA replication and repair protein recF [Bacteroides salanitronis
           DSM 18170]
          Length = 372

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 152/374 (40%), Gaps = 21/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F  +    +G NG+GKTN+++A+ +LS  +       +  
Sbjct: 1   MWLKRISILNYKNLEQVELAFSKKLNCIIGKNGMGKTNLMDAVYYLSFCKSATNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  FF      E   G   ++   L+ R  +  +    N      + +    + + 
Sbjct: 61  ILH-ERDFFVIQGFYETDGGEPEEVYCGLKRRQKKQFKR---NKKEYSRLSDHIGLIPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + ++ RN LL  E   +   
Sbjct: 117 MVSPADSWLIAGGSEERRRFMDVVISQFDREYLDALIRYNKALQQRNALLKAEIEPEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            +  E  MA  G  +   R + ++    +   Y    +    ++SL             A
Sbjct: 177 MALWEEAMASTGKLVFQKRKDFVDEFIPVFQSYYAYISQGREQVSLMY--------ESHA 228

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L + R+ D +   +  G H+ DLI++     +    GS G+ K  L+ + LA
Sbjct: 229 AHGNLLQLLKESRQRDRILGYSTKGIHKDDLIMELGGFPMKRE-GSQGQNKTYLIALKLA 287

Query: 303 HARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL-- 358
               +        PI+LLD+I   LD  +   + ++V  D   QIF+T T++   D +  
Sbjct: 288 QFDFLKRAGNRTVPIVLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDKILS 347

Query: 359 --NETAKFMRISNH 370
              E      +   
Sbjct: 348 EVGEDYNLFEVEGG 361


>gi|330952330|gb|EGH52590.1| recombination protein F [Pseudomonas syringae Cit 7]
          Length = 367

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 163/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  IF G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINIFYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++   A+
Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSAV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|282898562|ref|ZP_06306550.1| RecF protein [Cylindrospermopsis raciborskii CS-505]
 gi|281196430|gb|EFA71339.1| RecF protein [Cylindrospermopsis raciborskii CS-505]
          Length = 369

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 162/374 (43%), Gaps = 13/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRNY   ++ F A  TI VG+N  GK+N+LE++  L+  R  R     D 
Sbjct: 1   MYLQSLELRHFRNYQEQKVEFTAPKTILVGNNAQGKSNLLESVELLATLRSHRLGKDRDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+       A +E + G+ D+++ L     RSV    IN   +R   +    L    
Sbjct: 61  IQEGAE-IAQVSAILERITGVNDLTLHLRRNGRRSV---AINGEKVRRQMDFLGILNAVE 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179
                  +  G    RR +LD ++  ++P +   +  + +++R RN  L           
Sbjct: 117 FSSLDLELVRGSPAIRRTWLDTLLVQLEPLYAHILHQYNQVLRQRNAFLKTSQQKGIKNH 176

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            S  +  +AQ+   G K+   R   I  L+ +   +    +    KL +    +      
Sbjct: 177 DSELAIWDAQLVTTGTKVMRRRNRAIQRLAPIATNWHSSISGKTEKLEINYMPNVPILID 236

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L + +  ++     ++     TL+GPHR ++ +   ++     + S G+Q+ +++ +
Sbjct: 237 -EELPQFFLDRVQQHSPIELHRGTTLVGPHRDEIEL-IVNRTPARQYASQGQQRTLVLAL 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358
            LA  +LI       P+LLLD++ A LD  ++N L   + D   Q  +T T    FD+  
Sbjct: 295 KLAELQLIEEVVNDTPLLLLDDVLAELDLSRQNQLLDAIQD-RFQTLITTTHLGAFDAQW 353

Query: 359 NETAKFMRISNHQA 372
             +++ + + +   
Sbjct: 354 LNSSQILFVKSGTI 367


>gi|104779319|ref|YP_605817.1| recombination protein F [Pseudomonas entomophila L48]
 gi|122985999|sp|Q1IH46|RECF_PSEE4 RecName: Full=DNA replication and repair protein recF
 gi|95108306|emb|CAK13000.1| DNA replication, recombinaison and repair protein [Pseudomonas
           entomophila L48]
          Length = 367

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 157/374 (41%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L+++  RN   + L    +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRLSVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F +VE  EG  +++ +  E + +     ++I+    R   +L + L + 
Sbjct: 61  IQYEQQTC-TVFGQVELAEGGTSNLGVSRERQGE---FTIRIDGQNARSAAQLAEMLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D+   
Sbjct: 117 LINPDSFRLLEGAPKVRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAVSQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +    +  E      L+L+ +     D+     
Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFERTLS-ELVELDGLTLSYYRGWDKDR----- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             E  + L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 231 --ELNEVLATSLLRDQQMGHTQAGPQRADLRLRLGANNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LDE  R AL R++ ++  Q+F+T  D            
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDEQHRRALCRLLEELNCQVFITCVDHEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|84501258|ref|ZP_00999463.1| recombination protein F [Oceanicola batsensis HTCC2597]
 gi|84390549|gb|EAQ03037.1| recombination protein F [Oceanicola batsensis HTCC2597]
          Length = 367

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 133/368 (36%), Positives = 191/368 (51%), Gaps = 11/368 (2%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
            R+ +  L +S FR+Y    L  D +     G NG GKT++LEA+S  SPGRG RRA+  
Sbjct: 2   GRLCLTRLTLSHFRSYRHAALAPDGRPVAIHGANGAGKTSLLEAVSMFSPGRGLRRAAAE 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D+ R      +     +  +  + ++    E    RSVR     D        L +  R+
Sbjct: 62  DLIRRPEALGWKLTGVLTSLRQVHELESTAEPGAARSVRI----DGKAAAQAALGRVARV 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WLVPSMDR++   +  RRRFLDRM  +  P H    + +E+ MR RNRLL +   D  W
Sbjct: 118 LWLVPSMDRLWIEGAEGRRRFLDRMTLSFLPGHAEAALAYEKAMRERNRLLKDMVRDEHW 177

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             ++EAQMAE G +I   R   ++ ++            P + LS     +G+      A
Sbjct: 178 YVALEAQMAEAGARITANRTRALSLIAGATAGAATAFPAPELSLS---HAEGELPDDAAA 234

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L       L +GR+ D  + RTLIGPHR DL   +  K I     STGEQK +L+ + LA
Sbjct: 235 L----RLALAEGRRRDLQAGRTLIGPHRVDLGARWAAKGIAARDASTGEQKALLISLILA 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +AR ++   G  PILLLDE++AHLD  +R AL+  V  +G+Q +MTGT   +F  L + A
Sbjct: 291 NARALAGDFGAPPILLLDEVAAHLDAARRAALYDEVCALGAQAWMTGTGPELFADLGDRA 350

Query: 363 KFMRISNH 370
           + MR++  
Sbjct: 351 QVMRVTEE 358


>gi|89892749|ref|YP_516236.1| DNA replication and repair protein recF [Desulfitobacterium
           hafniense Y51]
 gi|219666074|ref|YP_002456509.1| DNA replication and repair protein RecF [Desulfitobacterium
           hafniense DCB-2]
 gi|122484263|sp|Q252K0|RECF_DESHY RecName: Full=DNA replication and repair protein recF
 gi|254790474|sp|B8FXW8|RECF_DESHD RecName: Full=DNA replication and repair protein recF
 gi|89332197|dbj|BAE81792.1| DNA replication and repair protein recF [Desulfitobacterium
           hafniense Y51]
 gi|219536334|gb|ACL18073.1| DNA replication and repair protein RecF [Desulfitobacterium
           hafniense DCB-2]
          Length = 365

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 166/372 (44%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK+L++  FRNY    + F    TI  G+NG GKTNILE I +L  G+ +R     ++
Sbjct: 1   MEIKWLHLKSFRNYQDQEVDFRPGLTILQGENGQGKTNILEGIYYLLTGKSYRVHREQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G   F      + G   +    ++LE+      + ++IN +  R + E    + + +
Sbjct: 61  ARWGENEF-----HLYGDFIVQRRKLRLESHYQDKRKIIKINQIPCRKLSEYVGTINVVF 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180
             P    +  G   ERRRFLD  +     +H + +  + ++++ +N LL +G        
Sbjct: 116 FSPDDLVMVKGGPAERRRFLDLHIAQHHSKHIQLLNAYNKVLQQKNALLKQGQGGSKSQI 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +       Q+  +G +I   R E    LS    E   + +    +L++     GK   + 
Sbjct: 176 AQIELWNEQILRIGSEIIRNRWEFTGLLSRKGQEIYGQISSGKEELTMDYHALGK--NNL 233

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                 + K L +   ++   +  LIGPHR D++    +++  + +GS G+Q+ +++   
Sbjct: 234 EEALAAFPKLLAEKMSLEMERKMVLIGPHRDDILFKLNERSARL-YGSQGQQRSIVLSTK 292

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA   +I    G  P+LLLD++ + LD  +R+ L      +  Q  MT T          
Sbjct: 293 LAELEVIRQEKGDYPLLLLDDVLSELDRFRRDYLLDYTKSLQ-QTIMTMTSAETLT--QR 349

Query: 361 TAKFMRISNHQA 372
            +  +++   Q 
Sbjct: 350 ASLLLKVEKGQI 361


>gi|53729132|ref|ZP_00134098.2| COG1195: Recombinational DNA repair ATPase (RecF pathway)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207491|ref|YP_001052716.1| recombination protein F [Actinobacillus pleuropneumoniae L20]
 gi|166220695|sp|A3MY75|RECF_ACTP2 RecName: Full=DNA replication and repair protein recF
 gi|126096283|gb|ABN73111.1| DNA replication and repair protein RecF [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 360

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 83/370 (22%), Positives = 151/370 (40%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +
Sbjct: 1   MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F    AR++  +    + I+ +   D     L+IN      + +L   L +  
Sbjct: 61  IHYQAEDF-VLHARIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           + +RL++ RN  L +     +   
Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L   ++  R     AL   I +  Q    P +++ ++     +         
Sbjct: 176 PWDTELAKLAEIVSQMRANYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEKGT------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L  G + D     T+IGP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -DYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCVLRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360
             +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   + +     E
Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346

Query: 361 TAKFMRISNH 370
                ++   
Sbjct: 347 QDSLFQVQQG 356


>gi|294138804|ref|YP_003554782.1| DNA replication and repair protein RecF [Shewanella violacea DSS12]
 gi|293325273|dbj|BAJ00004.1| DNA replication and repair protein RecF [Shewanella violacea DSS12]
          Length = 365

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 165/373 (44%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I  FRN AS +L+      +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLTRLHIETFRNIASAQLLPAEGINLIYGLNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  S    + FA++      + I ++     +  V+   I+   I+ +  L + L I  
Sbjct: 61  IQH-SDDKLTLFAKLNVQNKESKIGLRRFRSGETEVK---IDGDKIKRLSTLAESLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  D       ++ +R+++ RN+LL       S   
Sbjct: 117 ITPESFALLFDGPKSRRQFIDWGAFHCDKSFHSAWVNVKRILKQRNQLLKNEAG-YSQIQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++      +   R + +N+L+  +   +  E  P + + ++              K
Sbjct: 176 YWDTELVRYSEVVTDIRTQYVNSLNEQLKGII-GEFLPQVDVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L      D  S  T  GPH++DL +      +  A  S G+ K+++  + +A  
Sbjct: 228 TDYAQLLETQYPRDVSSGNTASGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLN-ETA 362
           +L+        I L+D++ + LD   R  L + +TD G+Q+F+T  +  ++ DSLN   +
Sbjct: 287 KLLKQQIDKNSIYLVDDLPSELDAKHRQLLLQQLTDTGAQVFVTAIEPAAILDSLNTPPS 346

Query: 363 KFMRISNHQALCI 375
           K   +   +   I
Sbjct: 347 KVFHVEQGRVTVI 359


>gi|292669296|ref|ZP_06602722.1| recombination protein F [Selenomonas noxia ATCC 43541]
 gi|292649137|gb|EFF67109.1| recombination protein F [Selenomonas noxia ATCC 43541]
          Length = 373

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 95/379 (25%), Positives = 164/379 (43%), Gaps = 18/379 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L++  +RNY  L L FD    IF+G N  GKTNI+EA+ + + GR  R +S A++
Sbjct: 1   MQITELSLRSYRNYEDLALGFDDGAQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G        A +       D+  +L     R  R             +L   L +  
Sbjct: 61  IRMGDDG-----AHIGLRFVRHDVPRELSFTFQRGARRRIEYAGENLRQRDLVGILPMVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RRR+LD  +    P +   ++ +  ++R R  +L +     +   
Sbjct: 116 FSPEDLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTHILRQRGAVLKDIRERLAPVD 175

Query: 185 S---IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           +    +AQ+A     I   R+  +  L + +   VQ       +L+L+  + G  +    
Sbjct: 176 ALLPWDAQLARSAAWIVTRRIAAVADLGA-LSTRVQAVLADGEELTLSYEIAGADEDVPG 234

Query: 242 A-------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           A       L+  Y + L + R  D +   T  GPH  DL++     ++  ++GS G+Q+ 
Sbjct: 235 AKEGMAQRLELWYNEMLIENRARDIVRAATGTGPHLDDLVLRVDGMSLR-SYGSQGQQRT 293

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
             + + +A    +   T  APILLLD++ + LD D+R AL   +     Q F+T TD + 
Sbjct: 294 GALALKIAELFYLREKTSEAPILLLDDVMSELDADRRRALLDFIRCERIQTFITATDAAY 353

Query: 355 FDSLNETAKFMRISNHQAL 373
           F +      +  +   Q L
Sbjct: 354 FPA-ERMGTYRHVQAGQVL 371


>gi|170718431|ref|YP_001783358.1| recombination protein F [Haemophilus somnus 2336]
 gi|189039626|sp|B0UUM0|RECF_HAES2 RecName: Full=DNA replication and repair protein recF
 gi|168826560|gb|ACA31931.1| DNA replication and repair protein RecF [Haemophilus somnus 2336]
          Length = 358

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I+ FRN  ++ L F+      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLIINHFRNLTAIDLEFERGFNFIIGNNGSGKTSLLEAIFYLGHGRSFKSAVANRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P F     +++  +    + ++ + + +     ++IN    + + +L   L +  
Sbjct: 61  ISYQQPHFI-LHGKIQEQQHQWSVGLQKQRQGNT---LMKINGEDAKKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR +LD  +F  +           RL++ RN  L +         
Sbjct: 117 ITPEGLTLLNGGPSYRRAYLDWGLFHHNASFYNAWSSLNRLLKQRNSAL-QQVCSYEKLK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ +L  +++  R     AL S I +  Q    P +++S++       +       
Sbjct: 176 IWDRELTKLAYQVSYWREAYAEALRSEIEKTCQ-LFLPELEISVSFHQGWDKNM------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -DYADLLQQNFERDRALGYTFSGPQKADFRFKANGLPVEDIL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363
             +        I LLD+ ++ LD+ KR  L   +   GSQ+F+T   +     +  E  +
Sbjct: 287 EHLMQQKKRHCIFLLDDFASELDQYKRTLLAERLQKNGSQVFVTAITREQLQQIQPEKHR 346

Query: 364 FMRISNHQA 372
              + N + 
Sbjct: 347 TFYLENGRI 355


>gi|269303216|gb|ACZ33316.1| DNA replication and repair protein RecF [Chlamydophila pneumoniae
           LPCoLN]
          Length = 364

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 94/368 (25%), Positives = 157/368 (42%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L +  FRN++ L +    +    VG N  GKTN+LEA+  LS GR FR     D 
Sbjct: 3   MKICSLKLKNFRNHSDLEISLAPKLNYIVGKNAQGKTNLLEALYVLSLGRSFRTQHLTDT 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              GS  FF     +E       +   L    D+  + +  N + I+ + +L   + I  
Sbjct: 63  ITFGSSHFF-----LETQFEKDHLPQALSIYTDKQGKKIFYNQLPIKTLSQLIGKVPIVL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  + SG   +RR FL+ ++   D  +   +  + R ++ RN LL      +S  +
Sbjct: 118 FSSKDRLLISGAPADRRLFLNLLLSQCDSHYTLCLSYYHRALQQRNALLKSKQ--TSTVA 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+ + G  ++I R      LS L  E         + L     L    D S  A+ 
Sbjct: 176 IWDEQLVKHGTYLSIQRFLCSQKLSDLSKELWSNNLKEQLALKFKSSLIKNSDISETAVA 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           EE+ K+L      D     T +GPHR D ++      ++    S G++  +L  + LA  
Sbjct: 236 EEFHKQLSISLPRDLEWGSTSVGPHREDFLLTMNQMPVS-QFSSEGQKHSLLAILRLAEC 294

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             +  +   +P++ LD+I A LD ++   L  +   +G Q  +T T   +   L +T+  
Sbjct: 295 LYLKQSHHVSPLVCLDDIHAGLDNERVGQLLDLAPTLG-QTLITSTH--MHGELPKTSLV 351

Query: 365 MRISNHQA 372
           + I N Q 
Sbjct: 352 LSIENAQV 359


>gi|325275334|ref|ZP_08141285.1| recombination protein F [Pseudomonas sp. TJI-51]
 gi|324099525|gb|EGB97420.1| recombination protein F [Pseudomonas sp. TJI-51]
          Length = 367

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 156/374 (41%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L    +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F  V+  EG  +++ +  E + D     ++I+    R   +L + L + 
Sbjct: 61  IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGD---FTIRIDGQNARSAAQLAELLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +    +  E      L+L+ +     D+     
Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFERTLS-ELVELGGLTLSYYRGWDKDR----- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             E  + L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 231 --ELQEVLASSLLRDQQMGHTQAGPQRADLRLRLAANNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  +         
Sbjct: 288 GHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|190149272|ref|YP_001967797.1| DNA replication and repair protein RecF [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262583|ref|ZP_07544214.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|226737764|sp|B3GZJ3|RECF_ACTP7 RecName: Full=DNA replication and repair protein recF
 gi|189914403|gb|ACE60655.1| DNA replication and repair protein RecF [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306872081|gb|EFN03794.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 360

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 83/370 (22%), Positives = 151/370 (40%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +
Sbjct: 1   MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F    AR++  +    + I+ +   D     L+IN      + +L   L +  
Sbjct: 61  IHYQAEDF-VLHARIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           + +RL++ RN  L +     +   
Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L   ++  R     AL   I +  Q    P +++ ++     +         
Sbjct: 176 PWDIELAKLAEIVSQMRASYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEKGT------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L  G + D     T+IGP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -DYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCVLRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360
             +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   + +     E
Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346

Query: 361 TAKFMRISNH 370
                ++   
Sbjct: 347 QDSLFQVQQG 356


>gi|170724373|ref|YP_001758399.1| recombination protein F [Shewanella woodyi ATCC 51908]
 gi|226737835|sp|B1KCX5|RECF_SHEWM RecName: Full=DNA replication and repair protein recF
 gi|169809720|gb|ACA84304.1| DNA replication and repair protein RecF [Shewanella woodyi ATCC
           51908]
          Length = 365

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 160/373 (42%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I  FRN +S +L       +  G NG GKT++LEAI FL  GR FR      V
Sbjct: 1   MSLTRLHIETFRNISSAQLHPSDGLNLIYGQNGSGKTSVLEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +       + FA +   E  + I ++     +  V+   IN   I+ +  L + L I  
Sbjct: 61  IQH-QDDKLTLFANLSLGEQESKIGLRRFRSGETEVK---INGDKIKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  D        + +R+++ RN+LL       S   
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDKSFHSAWANVKRILKQRNQLLKN-QVSYSQIQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++      + + R E +++L+  +   +  E  P +++ ++              K
Sbjct: 176 FWDKELVRYSELVTLIRKEYVDSLNEQLKGII-VEFLPQVEVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++ + L      D  +  T  GPH++DL +      +  A  S G+ K+++  + +A  
Sbjct: 228 TDFGQLLETQYLRDVAAGNTGSGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL-NETA 362
           +L+   T    I L+D++ + LD   R  L + + D G+QIF+T  D +   DSL    +
Sbjct: 287 KLLKQQTDKNSIYLVDDLPSELDAKHRQLLLQQLMDTGAQIFVTAIDPAAIVDSLTTPPS 346

Query: 363 KFMRISNHQALCI 375
           K   +       I
Sbjct: 347 KMFHVEQGCVTVI 359


>gi|113460284|ref|YP_718343.1| recombination protein F [Haemophilus somnus 129PT]
 gi|123327073|sp|Q0I0Y5|RECF_HAES1 RecName: Full=DNA replication and repair protein recF
 gi|112822327|gb|ABI24416.1| DNA replication and repair protein RecF [Haemophilus somnus 129PT]
          Length = 358

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 153/369 (41%), Gaps = 15/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I+ FRN  ++ L F+      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLIINHFRNLTAIDLEFERGFNFIIGNNGSGKTSLLEAIFYLGHGRSFKSAVANRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P F     +++  +    + ++ + + +     ++IN    + + +L   L +  
Sbjct: 61  ISYQQPHFI-LHGKIQEQQHQWSVGLQKQRQGNT---LMKINGEDAKKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR +LD  +F  +           RL++ RN  L +         
Sbjct: 117 ITPEGLTLLNGGPSYRRAYLDWGLFHHNASFYNAWSSLNRLLKQRNSAL-QQVCSYEKLK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ +L  +++  R     AL S I +  Q    P +++S++       +       
Sbjct: 176 IWDRELTKLAYQVSYWREAYAEALRSEIEKTCQ-LFLPELEISVSFHQGWDKNM------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -DYADLLQQNFERDRALGYTFSGPQKADFRFKANGLPVEDIL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363
             +        I LLD+ ++ LD+ KR  L   +   GSQ+F+T   +     +  E  +
Sbjct: 287 EHLMQQKKRHCIFLLDDFASELDQYKRTLLAERLQKNGSQVFVTAITQEQLQQIQPEKHR 346

Query: 364 FMRISNHQA 372
              + N + 
Sbjct: 347 TFYLENGRI 355


>gi|28867246|ref|NP_789865.1| DNA replication and repair protein RecF [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213968439|ref|ZP_03396582.1| DNA replication and repair protein RecF [Pseudomonas syringae pv.
           tomato T1]
 gi|301384273|ref|ZP_07232691.1| recombination protein F [Pseudomonas syringae pv. tomato Max13]
 gi|302063877|ref|ZP_07255418.1| recombination protein F [Pseudomonas syringae pv. tomato K40]
 gi|302131960|ref|ZP_07257950.1| recombination protein F [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|38258486|sp|Q88BK1|RECF_PSESM RecName: Full=DNA replication and repair protein recF
 gi|28850480|gb|AAO53560.1| DNA replication and repair protein RecF [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213926727|gb|EEB60279.1| DNA replication and repair protein RecF [Pseudomonas syringae pv.
           tomato T1]
 gi|330876357|gb|EGH10506.1| recombination protein F [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
 gi|330964179|gb|EGH64439.1| recombination protein F [Pseudomonas syringae pv. actinidiae str.
           M302091]
 gi|331017723|gb|EGH97779.1| recombination protein F [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 367

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 162/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMSTWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCLASDEIDEFRRAYIKALKPVFEKTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLNRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+         + 
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTDT 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|296282365|ref|ZP_06860363.1| recombination protein F [Citromicrobium bathyomarinum JL354]
          Length = 361

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 127/368 (34%), Positives = 195/368 (52%), Gaps = 14/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++I +FRN+    L   A+  + VG NG GKTN+LEA+S L+PGRG RRA   ++
Sbjct: 1   MALDRISILDFRNHRQTALEDTARFNLLVGANGAGKTNVLEALSLLAPGRGLRRAKLPEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            RI  P  F+  AR++  +G   + +         + R +++N      +  L++ L + 
Sbjct: 61  ARIDGPGGFTVAARLQPADGAEPVQLGTVVDAAQPNRRRVRVNGAERSALG-LSEWLSVR 119

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
           WL P+MD +F+  +  RRR+LDR+  A  P H      +E  +R RNRLL+ +   D  W
Sbjct: 120 WLTPAMDGLFTDSAGARRRYLDRLALATAPGHAALSNRYETALRNRNRLLSDDAPPDPQW 179

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             ++EAQ+AE G  I   R  ++  L+  + E      FP   L++        + +   
Sbjct: 180 LDALEAQLAEHGAAIAANRRALVEELNREL-EAQADALFPRPLLAI--------EPTGPE 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                A  L   R+ +  + RTLIGPHR++L V   DK +  A  STGEQK +L+ I LA
Sbjct: 231 EHTALADALRGNRRTERRAGRTLIGPHRAELAVTLADKGVPAARASTGEQKAMLIAITLA 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           H  L +   G A +LLLDE++AHLD  +R ALF  +   G Q++MTGT++  FD +   A
Sbjct: 291 HGALATR--GRAGLLLLDEVAAHLDPQRREALFARLAANGEQVWMTGTERMPFDPILPDA 348

Query: 363 KFMRISNH 370
               +S  
Sbjct: 349 AVWDVSGG 356


>gi|66043274|ref|YP_233115.1| recombination protein F [Pseudomonas syringae pv. syringae B728a]
 gi|81308684|sp|Q500U5|RECF_PSEU2 RecName: Full=DNA replication and repair protein recF
 gi|63253981|gb|AAY35077.1| RecF protein [Pseudomonas syringae pv. syringae B728a]
          Length = 367

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSIHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|333025716|ref|ZP_08453780.1| putative recombination protein F [Streptomyces sp. Tu6071]
 gi|332745568|gb|EGJ76009.1| putative recombination protein F [Streptomyces sp. Tu6071]
          Length = 413

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 98/394 (24%), Positives = 157/394 (39%), Gaps = 36/394 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y    +  +   T FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 27  MHVTHLSLADFRSYERAEVSLEPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 86

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+   F   A  +G        ++LE    R+ R        +R  D L   +R   
Sbjct: 87  VRAGAERAFVRAAVTQGERSQL---VELEINPGRANRARINRSSQVRPRDVL-GIVRTVL 142

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 143 FAPEDLALVKGDPGERRRFLDELLTARHPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 202

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLSLTGFL 232
              D S     +  +A  G ++   R ++I AL  L+    E +     P + L      
Sbjct: 203 RTLDLSTLDIWDQHLARAGAELLAQRTDLIAALQPLVDKSYEQLAPGGGPAL-LEYRPSA 261

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
            G   Q       +    L + RK +     TL+GPHR   ++          + S GE 
Sbjct: 262 PGT-AQGREEFYAQLLAALGEVRKQEIERGVTLVGPHRD-DLLLKLGDLPAKGYASHGES 319

Query: 293 KVVLVGIFLAHARLISNT-------------TGFAPILLLDEISAHLDEDKRNALFRIVT 339
               + + LA   L+                    P+L+LD++ A LD  +R+ L   V 
Sbjct: 320 WSYALALRLASYDLLRAEPWAPQTAPGPEGQRSGEPVLILDDVFAELDARRRDRLAEHVA 379

Query: 340 DIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372
             G Q+ +T   ++ V   L        +S    
Sbjct: 380 -PGEQVLVTAAVEEDVPAPL--KGTRYAVSEGTV 410


>gi|330937294|gb|EGH41305.1| recombination protein F [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330976404|gb|EGH76461.1| recombination protein F [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 367

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|307249202|ref|ZP_07531199.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858726|gb|EFM90785.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 360

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 83/370 (22%), Positives = 151/370 (40%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +
Sbjct: 1   MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F    AR++  +    + I+ +   D     L+IN      + +L   L +  
Sbjct: 61  IHYQAEDF-VLHARIDEGQHQWSVGIQKKRSGDT---LLKINGEGGNKISDLAHLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           + +RL++ RN  L +     +   
Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L   ++  R     AL   I +  Q    P +++ ++     +         
Sbjct: 176 PWDTELAKLAEIVSQMRANYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEK-------G 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L  G + D     T+IGP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCVLRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360
             +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   + +     E
Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346

Query: 361 TAKFMRISNH 370
                ++   
Sbjct: 347 QDSLFQVQQG 356


>gi|330500917|ref|YP_004377786.1| recombination protein F [Pseudomonas mendocina NK-01]
 gi|328915203|gb|AEB56034.1| recombination protein F [Pseudomonas mendocina NK-01]
          Length = 367

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 159/372 (42%), Gaps = 17/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + ++  RN  S  L    +  I  G NG GKT++LEAI  L   R FR      V
Sbjct: 1   MSLTRITVTAVRNLHSSSLQPSPRINILYGANGSGKTSVLEAIHLLGLARSFRSTRLQPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                P+  + F +V+  EG  +++ I   +RD +    ++I+    R   +L   L + 
Sbjct: 61  IHYEQPAC-TIFGQVQLAEGGYSNLGI---SRDRQGQLQIRIDGQNARSAAQLADLLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++ R        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEHRFLGAWQRLQKALRQRNSWLRHGTLDGASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +    +  E      LSL+ +     D+     
Sbjct: 177 AAWDRELCGASEEIDTYRRAYIQALKPVFERTLA-ELLRLEGLSLSYYRGWDKDR----- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             E ++ L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 231 --ELSEVLATSLLRDQQLGHTQAGPQRADLRLRLAGHN-AAEILSRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L++       I L+D++ + LDE  R AL R++ D+  Q+F+T  D  +      ++ 
Sbjct: 288 GHLVNEAKRGQCIYLVDDLPSELDEQHRQALCRLLEDLRCQVFITCVDHELLREGWQMDT 347

Query: 361 TAKFMRISNHQA 372
                 + + + 
Sbjct: 348 PVAMFHVEHGRI 359


>gi|327404856|ref|YP_004345694.1| DNA replication and repair protein recF [Fluviicola taffensis DSM
           16823]
 gi|327320364|gb|AEA44856.1| DNA replication and repair protein recF [Fluviicola taffensis DSM
           16823]
          Length = 364

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 151/365 (41%), Gaps = 18/365 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRN++     F+A     VG NG GKTN+L+A+ +LS  R +   +    
Sbjct: 1   MFVESLSLVNFRNHSEAEFQFEAGVNCIVGKNGSGKTNVLDAVHYLSMCRSYLNPTDKQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     FF         E   ++   ++     S +  + N      + +   H  +  
Sbjct: 61  IRFNEQ-FFVIQGCWMKDEQPFNLYCGVKAG---SKKVFKKNKKEYNRLADHIGHFPVVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P    + S  S  RRR++D ++   D  +   +  + +++  RN LL      G+F+ 
Sbjct: 117 ISPYDTDLISEGSEVRRRWMDGIISQFDHEYLSDLQRYNKVLDQRNALLKLQFENGFFER 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+ + G  I+  RV  I+A   L   Y +  +     +SL    + K  ++ 
Sbjct: 177 ESIEIWDEQLIKYGTAIHNKRVSFIDAFIPLFQHYYKWISQEQESVSLNY--ESKLSET- 233

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                ++   +      D     T +G H+ D+        I    GS G+QK  L+ + 
Sbjct: 234 -----DFRTLIQQAYPKDMRVHYTSVGIHKDDITFLLEGLPIK-RFGSQGQQKSFLIALR 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDSLN 359
           LA    +       PILLLD+I   LD  +   L  +V+     Q+ +T TD+    ++ 
Sbjct: 288 LAQFDWLKERLNQTPILLLDDIFDKLDNLRVAQLMELVSKNTFGQVLVTDTDEIRVSAIF 347

Query: 360 ETAKF 364
           ET + 
Sbjct: 348 ETIQV 352


>gi|303251824|ref|ZP_07337995.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307249126|ref|ZP_07531133.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|302649254|gb|EFL79439.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|306854414|gb|EFM86610.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 360

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 83/370 (22%), Positives = 150/370 (40%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +
Sbjct: 1   MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S  F     R++  +    + I+ +   D     L+IN      + +L   L +  
Sbjct: 61  INYQSEDF-VLHGRIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           + +RL++ RN  L +     +   
Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSCWANLKRLLKQRNAALHQ-VRSYAELK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L   ++  R     AL   I +  Q    P +++ ++     +         
Sbjct: 176 PWDTELAKLAEIVSQMRANYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEK-------G 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L  G + D     T+IGP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCVLRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360
             +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   + +     E
Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346

Query: 361 TAKFMRISNH 370
                ++   
Sbjct: 347 QDSLFQVQQG 356


>gi|330470836|ref|YP_004408579.1| recombination protein F [Verrucosispora maris AB-18-032]
 gi|328813807|gb|AEB47979.1| recombination protein F [Verrucosispora maris AB-18-032]
          Length = 377

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 168/382 (43%), Gaps = 23/382 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y  + +  +    I +G NGVGKTN++EA+ +++     R A+ A +
Sbjct: 1   MYVRRLELVDFRSYERVGVDLEPGPNILIGANGVGKTNLVEALGYVATLDSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+ +     A V       ++ ++LE    ++ R  ++     R   ++   LR+  
Sbjct: 61  VRMGATAAVIRCAVVHEG---RELLVELEIVPGKANRA-RLGRSPARRARDVLGALRLVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRR+LD ++    PR+     D++R+++ RN LL   Y       
Sbjct: 117 FAPEDLELVRGDPAERRRYLDDLLVLRQPRYAGVRADYDRVVKQRNALLRTAYLARKTGG 176

Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
               D S  +  +  +A  G ++   R+E++ AL+  + +            ++      
Sbjct: 177 TRGGDLSTLAVWDTHLARHGAELLAGRLELVAALTPHVAKAYDAVAAGRGAAAIAYRPSV 236

Query: 235 KFDQSF---CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +  +       L +  A  L + R  +     TL+GPHR DL ++         + S GE
Sbjct: 237 ELTEPTTDRETLAKVLAAALEEQRSAEIERGTTLVGPHRDDLTLNLGPLPAK-GYASHGE 295

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350
                + + LA   L+ N  G  P+L+LD++ A LD  +R+ L  +V    SQ+ +T   
Sbjct: 296 SWSYALALRLAGYDLLRN-DGIEPVLVLDDVFAELDAGRRDRLADLVGGA-SQLLVTCAV 353

Query: 351 DKSVFDSLNETAKFMRISNHQA 372
              V D+L        +S    
Sbjct: 354 ADDVPDAL--RGARYEVSEGTV 373


>gi|26986757|ref|NP_742182.1| recombination protein F [Pseudomonas putida KT2440]
 gi|38258508|sp|Q88RW7|RECF_PSEPK RecName: Full=DNA replication and repair protein recF
 gi|24981348|gb|AAN65646.1|AE016191_3 DNA replication and repair protein RecF [Pseudomonas putida KT2440]
          Length = 367

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 157/374 (41%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L+   +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F  V+  EG  +++ +  E + +     ++I+    R   +L + L + 
Sbjct: 61  IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGE---FTIRIDGQNARSAAQLAELLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +    +  E      L+L+ +     D+     
Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFERTLS-ELVELDGLTLSYYRGWDKDR----- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             E  + L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 231 --ELQEVLASSLLRDQQMGHTQAGPQRADLRLRLAGNNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  +         
Sbjct: 288 GHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|298490844|ref|YP_003721021.1| DNA replication and repair protein RecF ['Nostoc azollae' 0708]
 gi|298232762|gb|ADI63898.1| DNA replication and repair protein RecF ['Nostoc azollae' 0708]
          Length = 371

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 172/376 (45%), Gaps = 13/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++ +FRNY   ++ F A  TI VG+N  GK+N LEA+  L+  R  R A   D+
Sbjct: 1   MYLKTLHLRQFRNYQDQKIEFTAPKTILVGNNAQGKSNFLEAVELLATLRSHRLARDHDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  +     A +E   G++D+++ L     RSV    IN  ++R   +    L    
Sbjct: 61  IRDG-DAIAQINATLERALGISDLTLTLHRHARRSV---AINSEIVRRQMDFLGVLNAVE 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-----YFD 179
                  +  G    RR +LD ++  ++P +   +  + +++R RN  L +         
Sbjct: 117 FSSLDLELVRGSPENRRNWLDTLLIQLEPVYAHILQQYNQVLRQRNAFLKKSQESGVRSQ 176

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            S  S  +AQ+   G ++ I R   I  L+ +   +    +     L +    +    ++
Sbjct: 177 ESQLSIWDAQLVTAGTRLIIRRDRAIQRLAPIAAGWHASISGSTEVLQIQYAPNVPLAKN 236

Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +++ +  K+      +     TL+GPHR ++ +    K     +GS G+Q+ +++ 
Sbjct: 237 HAEEVQQAFLGKIQQRTASELHRSTTLVGPHRDEVKLSINQKP-ARQYGSQGQQRTLVLA 295

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357
           + LA  +LI      +P+LLLD++ A LD  ++N L   + +   Q  +T T    FDS 
Sbjct: 296 LKLAELQLIEEVINESPLLLLDDVLAELDPFRQNQLLDAIQE-RFQTLITTTHLGAFDSQ 354

Query: 358 LNETAKFMRISNHQAL 373
             ++++ + +   + +
Sbjct: 355 WLKSSQILYVRTGKII 370


>gi|313496420|gb|ADR57786.1| RecF [Pseudomonas putida BIRD-1]
          Length = 367

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 157/374 (41%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L+   +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F  V+  EG  +++ +  E + +     ++I+    R   +L + L + 
Sbjct: 61  IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGE---FTIRIDGQNARSAAQLAELLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +    +  E      L+L+ +     D+     
Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFERTLS-ELVELDGLTLSYYRGWDKDR----- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             E  + L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 231 --ELQEVLASSLLRDQQMGHTQAGPQRADLRLRLAGNNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  +         
Sbjct: 288 GHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELHCQVFITCVDHELLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|170719190|ref|YP_001746878.1| recombination protein F [Pseudomonas putida W619]
 gi|226737821|sp|B1J3Y4|RECF_PSEPW RecName: Full=DNA replication and repair protein recF
 gi|169757193|gb|ACA70509.1| DNA replication and repair protein RecF [Pseudomonas putida W619]
          Length = 367

 Score =  291 bits (746), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 156/374 (41%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L    +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F  V+  EG  +++ +  E   D     ++I+    +   +L + L + 
Sbjct: 61  IQY-EQAACTVFGEVQLSEGGTSNLGVSRERAGD---FTIRIDGQNAKSAAQLAELLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMPAWQRLQKALRQRNSWLRHGTLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     D+     
Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFEQTLS-ELVELDGLTLSYYRGWDKDR----- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             E  + L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 231 --ELNEVLASSLLRDQQMGHTQAGPQRADLRLRLAANNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  +         
Sbjct: 288 GHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|148545262|ref|YP_001265364.1| recombination protein F [Pseudomonas putida F1]
 gi|166220725|sp|A5VWC0|RECF_PSEP1 RecName: Full=DNA replication and repair protein recF
 gi|148509320|gb|ABQ76180.1| DNA replication and repair protein RecF [Pseudomonas putida F1]
          Length = 367

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 157/374 (41%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L+   +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLLPSPRINILYGSNGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F  V+  EG  +++ +  E + +     ++I+    R   +L + L + 
Sbjct: 61  IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGE---FTIRIDGQNARSAAQLAELLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +    +  E      L+L+ +     D+     
Sbjct: 177 AAWDRELCLASAEIDEYRRNYIKALKPVFERTLS-ELVELDGLTLSYYRGWDKDR----- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             E  + L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 231 --ELQEVLASSLLRDQQMGHTQAGPQRADLRLRLAGNNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  +         
Sbjct: 288 GHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|307265435|ref|ZP_07546991.1| DNA replication and repair protein RecF [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919549|gb|EFN49767.1| DNA replication and repair protein RecF [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 362

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRN    ++ F     IF G N  GK+N+LE+I  LS GR FR +   ++
Sbjct: 1   MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTEL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G   F        E  +   +   K         + +++N   I+   EL   L   
Sbjct: 61  IKFGEDYFYVKAIICQENNDKKIEFGYK-----KNENKVIKVNGNKIKSTSELLGQLLTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSS 181
              P    I       RR++LD  +  ++  +   ++ + +++  RN+LL   +     S
Sbjct: 116 IFSPEDLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILINRNKLLKTIKEGKSRS 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + Q+ E G KI + R   +  +   I +++ + +    ++     +  K      
Sbjct: 176 ILEIFDDQLVEYGAKIIVVRQSYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEE 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +K+   +KL     +D     T +GPHR D  +   +   +  + S G+Q+ V + + L
Sbjct: 236 IVKKRLKEKLLKNIDLDLKYLTTQVGPHREDFKI-IINGYDSRVYSSQGQQRTVALCLKL 294

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           +   ++   T   PILLLD++ + LDE+++  +   +   G Q F+T T K     L   
Sbjct: 295 SEFEILKKETSEKPILLLDDVMSELDENRKKYILERLQ--GFQTFITHTTKR---DLKGD 349

Query: 362 AKFMRISNHQAL 373
             + +ISN   +
Sbjct: 350 C-YFKISNGVVI 360


>gi|167621944|ref|YP_001672238.1| recombination protein F [Shewanella halifaxensis HAW-EB4]
 gi|189039642|sp|B0TLA6|RECF_SHEHH RecName: Full=DNA replication and repair protein recF
 gi|167351966|gb|ABZ74579.1| DNA replication and repair protein RecF [Shewanella halifaxensis
           HAW-EB4]
          Length = 365

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 158/373 (42%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I  FRN +  +L       +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLTRLHIETFRNISLAQLDPGDGLNLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +       + FA +   E  + I ++     +  V+   IN   I+ +  L + L I  
Sbjct: 61  IQHN-DDKLTLFANLSVCEQESKIGLRRFRNGETEVK---INGDNIKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  D        +  R+++ RN+LL       S   
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDKSFHLAWANVRRILKQRNQLLKN-QVSYSQIQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++     ++   R + +++L+  +   +  E  P +++ ++              K
Sbjct: 176 YWDKELVRYSEQVTEIRKQYVDSLNEQLKGII-GEFLPLVEVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++ + L      D  +  T  GPH++DL +      +  A  S G+ K+++  + +A  
Sbjct: 228 TDFGQLLETQYLRDVAAGNTGSGPHKADLRLRVGVLPVQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362
           +L+   T    I L+D++ + LD   R  L + + D G+Q+F+T  + +   DSL    +
Sbjct: 287 KLLKQQTDKNSIYLVDDLPSELDAQHRKLLLQQLMDTGAQVFVTAIEPAAIVDSLATPPS 346

Query: 363 KFMRISNHQALCI 375
           K   +       I
Sbjct: 347 KMFHVEQGCVTVI 359


>gi|322513483|ref|ZP_08066593.1| recombination protein F [Actinobacillus ureae ATCC 25976]
 gi|322120702|gb|EFX92586.1| recombination protein F [Actinobacillus ureae ATCC 25976]
          Length = 360

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 150/370 (40%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN  S+ L         VG NG GKT++LEAI +L  GR F+      +
Sbjct: 1   MPLSRLIINNFRNLQSIDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F     R++  +    + I+ +   D     L+IN      + +L   L +  
Sbjct: 61  IHYQAEDF-VLHGRIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           + +RL++ RN  L +         
Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSYWANLKRLLKQRNAALHQ-VRSYVELK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ +L   ++  R     AL   I +  Q    P +++ ++     +         
Sbjct: 176 PWDIELVKLAETVSQMRASYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWE-------QG 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L  G + D  +  T+IGP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYAEILAQGFERDKATGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360
             +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   + +     E
Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346

Query: 361 TAKFMRISNH 370
             +  +I   
Sbjct: 347 QDRLFQIQQG 356


>gi|189423085|ref|YP_001950262.1| recombination protein F [Geobacter lovleyi SZ]
 gi|226737802|sp|B3E8N9|RECF_GEOLS RecName: Full=DNA replication and repair protein recF
 gi|189419344|gb|ACD93742.1| DNA replication and repair protein RecF [Geobacter lovleyi SZ]
          Length = 368

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 91/368 (24%), Positives = 159/368 (43%), Gaps = 10/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + + ++RN     +      T+  G NG GKTN LE++  L   R FR A   D+
Sbjct: 1   MFLKQVWLEQYRNIQKACIQPARHLTVLYGRNGQGKTNFLESLYLLGNARPFRAAKVPDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              GS S     A V G+   A +   +    + S R + I+D  +    +L+  L +  
Sbjct: 61  ISHGSRS-----AAVRGLVLAAGVESTIVLHVENSTRRVTIDDKAVHRAADLHGKLAVVV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +       RRR+LDR ++A D         + R+++ RN LL       +   
Sbjct: 116 FSPDDTAMVKLGPETRRRYLDRSLYASDAAFLSDYHTYYRILKQRNALLKTNQ--QAGLD 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               Q+A  G+++   R    + L+ L+ +  Q+      K+S+    D           
Sbjct: 174 LWTEQLATAGIRLMQHRQHYTSRLNQLLQQKYQQIAGEQEKVSVVYQPDVICTAEENGT- 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E       +  + D   + T  GPHR DL+    D+ +  + GS G+Q+  ++ + +A  
Sbjct: 233 ELLLNVFRNQHEQDLRYKSTGRGPHRDDLLFSIGDRPLK-SFGSQGQQRSFVLALKMAEL 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAK 363
             +  T G  P+LLLD+I++ LD ++   L   V     Q+ +T TD + F   L + +K
Sbjct: 292 DHLQETFGEMPLLLLDDIASELDRERMTNLLSYVRQREVQVLITTTDVTPFLPVLQQDSK 351

Query: 364 FMRISNHQ 371
             R+   +
Sbjct: 352 LFRVEEGR 359


>gi|192361120|ref|YP_001980527.1| recombination protein F [Cellvibrio japonicus Ueda107]
 gi|226737773|sp|B3PEM4|RECF_CELJU RecName: Full=DNA replication and repair protein recF
 gi|190687285|gb|ACE84963.1| RecF protein [Cellvibrio japonicus Ueda107]
          Length = 365

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 164/375 (43%), Gaps = 17/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +   RN  S+ +   ++  +  G NG GKT++LEAI+ L+ GR FR   +  +
Sbjct: 1   MSLARLRVHHLRNLESVDIEPSSRVNLIYGLNGSGKTSLLEAINVLALGRSFRSHKHKPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +F + F RV   +  A+I I ++      V  L+ N   +  + +L   L +  
Sbjct: 61  ISHQQLAF-TIFGRV-LADDAAEIPIGIQRNQQGEV-MLKANGANVGSIADLAIFLPVQV 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +      +  G    RR+F+D +VF ++ +   +    +R ++ RN LL     D    S
Sbjct: 118 INSDTFLLLEGSPKVRRQFMDWLVFHVEHQFYPQWKSLQRCLKHRNSLLRRDRIDPFELS 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++ +L  +I+  R + +     +  + +Q E      L L         +      
Sbjct: 178 TWDQELVQLTEQIHCFREQCMALFVPVFEQLLQ-EFVVLEGLELHYQRGWDKHK------ 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L D  + D     T  G HR++L +    +       S G+QK+++  + +A  
Sbjct: 231 -DYAQVLQDSFERDKRLGVTHAGSHRAELRITLNGQD-AAEILSRGQQKLLVCALKIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-----FDSLN 359
            + S  TG   I L+D++ A LDE  R  L   +  + +Q+F+TG ++        D   
Sbjct: 289 LVFSQVTGRKCIYLVDDLPAELDEQHRQRLVDWLYRMDTQVFITGVERQALLAGWLDKPE 348

Query: 360 ETAKFMRISNHQALC 374
            T K   + + +  C
Sbjct: 349 ITPKMFHVEHGRVSC 363


>gi|119947310|ref|YP_944990.1| DNA replication and repair protein RecF [Psychromonas ingrahamii
           37]
 gi|166220727|sp|A1T0X6|RECF_PSYIN RecName: Full=DNA replication and repair protein recF
 gi|119865914|gb|ABM05391.1| DNA replication and repair protein RecF [Psychromonas ingrahamii
           37]
          Length = 359

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 156/369 (42%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L F+ +  + VG NG GKT +LEAI FL  GR FR    + V
Sbjct: 1   MSLSRLIIHQFRNINSATLDFNPKINVVVGPNGSGKTALLEAIYFLGLGRSFRTHLTSRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S SF + F+ ++   G   I ++     +     L+IN    + +  L ++L +  
Sbjct: 61  VEHESKSF-TLFSEIQNNNGSIPIGLQKSKSGET---LLKINGSYCKKLANLTQYLPLQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + SG    RR FLD  VF  DP         +RL++ RN  L +    +    
Sbjct: 117 ITPEGYTLLSGSPKNRRAFLDWGVFYHDPIFYPNWSRIKRLLKQRNAALKQCKTYNE-LQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R      L  L+ + +  +  P   ++   F     +       
Sbjct: 176 IWDNELCILSEEISQQREAYFELLMPLVKQTLA-DFLPDFSITSQFFCGWDKNN------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +     LFD    D     T  GP ++DL        ++    S G+ K+ +  + LA  
Sbjct: 229 KSLQDYLFDNFYRDKQIGYTSAGPQKADLRFKINGIPVSDVL-SRGQLKLFVYALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363
             +++      + L+D+ S+ LD++K+  L + + +  +QIF++       D L  +   
Sbjct: 288 LFLNSFDNKQCVFLIDDFSSELDQNKQQILAKHIINSNAQIFISVIAAENIDRLFGQEQT 347

Query: 364 FMRISNHQA 372
              + + + 
Sbjct: 348 VFHVEHGKI 356


>gi|289628212|ref|ZP_06461166.1| recombination protein F [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330870077|gb|EGH04786.1| recombination protein F [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330987021|gb|EGH85124.1| recombination protein F [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 367

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|284047391|ref|YP_003397730.1| DNA replication and repair protein RecF [Acidaminococcus fermentans
           DSM 20731]
 gi|283951612|gb|ADB46415.1| DNA replication and repair protein RecF [Acidaminococcus fermentans
           DSM 20731]
          Length = 378

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/378 (19%), Positives = 157/378 (41%), Gaps = 16/378 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  FRNY  + +      TIF GDN  GKTN+LE I   + G  FR     ++
Sbjct: 1   MRLENLRLLHFRNYEQVSIPLGHNITIFYGDNAQGKTNLLEGIHTAARGFSFRTRHEEEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+  + +   +     G + + +K      R  +   +N   +   ++    + +  
Sbjct: 61  PSFGAEEWAAEL-QYRDRYGSSRLLVKRYPVRGRMKKENLLNGNPVTPREQY-GLVNLVL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P   ++  G    RR+FLD  +  + P +   +  + R+++ RNR L         + 
Sbjct: 119 FTPDDLQLVKGDPALRRKFLDMEIAQVSPVYYDLLAQYNRVLQQRNRFLKQCRDREKLEE 178

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-------FLD 233
           +     +  +A+L   I   R++ ++ +     +           L+L+           
Sbjct: 179 AQLLVWDGALAQLAAGILDHRLQALSGILQAARQVYDGITGTQEALTLSYVQKRGDGEET 238

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            + +    A +  Y ++L    ++D +   T +GPHR DL + +  + +   +GS G+Q+
Sbjct: 239 VRENPGPGAWEGFYREQLRLRHRLDYLRGYTSLGPHRDDLEIFHEGRPLRA-YGSQGQQR 297

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
              + + L+    I +     P+LLLD++ + LD+ +R  L   +     Q F+T  +  
Sbjct: 298 TAALALKLSELEFIRSVREEYPVLLLDDVLSELDQHRREKLLGFINGT-VQTFLT-VNDR 355

Query: 354 VFDSLNETAKFMRISNHQ 371
               ++      R+   +
Sbjct: 356 HLAPVDGDVAAYRVREGR 373


>gi|303250482|ref|ZP_07336679.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251524|ref|ZP_07533431.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307256024|ref|ZP_07537812.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|302650470|gb|EFL80629.1| recombination protein F [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306860988|gb|EFM92994.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306865446|gb|EFM97341.1| DNA replication and repair protein recF [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 360

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/370 (22%), Positives = 150/370 (40%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN  SL L         VG NG GKT++LEAI +L  GR F+      +
Sbjct: 1   MPLSRLIINNFRNLQSLDLELSPNFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S  F     R++  +    + I+ +   D     L+IN      + +L   L +  
Sbjct: 61  INYQSEDF-VLHGRIDEGQHQWSVGIQKKRSGDT---LLKINGEDGNKISDLAHLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           + +RL++ RN  L +     +   
Sbjct: 117 ITPEGLTLLNGGPTFRRAFLDWGLFHQYTEFYSYWANLKRLLKQRNAALHQ-VRSYAELK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L   ++  R     AL   I +  Q    P +++ ++     +         
Sbjct: 176 PWDTELAKLAEIVSQMRANYAEALRPEIEKTCQ-FFLPELEIGVSFHQGWEK-------G 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L  G + D     T+IGP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYAEILAQGFERDKAMGYTMIGPQKADFRFRANGLPVEDVL-SRGQLKLLMCVLRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360
             +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   K   + +     E
Sbjct: 287 EYLVAQKERQCLFLIDDFASELDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESE 346

Query: 361 TAKFMRISNH 370
                ++   
Sbjct: 347 QDSLFQVQQG 356


>gi|312142412|ref|YP_003993858.1| DNA replication and repair protein RecF [Halanaerobium sp.
           'sapolanicus']
 gi|311903063|gb|ADQ13504.1| DNA replication and repair protein RecF [Halanaerobium sp.
           'sapolanicus']
          Length = 373

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 173/376 (46%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +    FRN+  + L  ++   IF+GDNG GKTN+LEAI  ++     R +  +++
Sbjct: 1   MHLKRVLCRNFRNFDEIILDLNSNLNIFLGDNGQGKTNLLEAIYIMATTNSHRSSVCSEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A ++ +    + +IKL  R D+  R +++ND  +  V E+  +L    
Sbjct: 61  INWKKEE-----ALIQLLLERREGNIKLAMRLDKGGRRVELNDNPLDKVKEMVGYLNAVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180
             P   ++       RR F++  +  +   +   +  ++ +++ RN LL           
Sbjct: 116 FSPEDLKLVKEGPSHRREFINLEISQVSRYYNHLLSKYDHILKQRNNLLKSIRDGKKSSE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALS--SLIMEYVQKENFPHIKLSLTGFLDG-KFD 237
           +  S  + Q++ +G KI + R+E+++ L   + + +    E    +++     LDG    
Sbjct: 176 NMLSIWDEQLSTIGAKIILKRIEVVDKLKILARLSQRQITEGKEELEIEYDISLDGFSEK 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                L+  + K L + R+ +     T+IGPHR DLI+   +  +   +GS G+Q+   +
Sbjct: 236 MGEAELRGLFNKNLKEKREQEINRGYTVIGPHRDDLILKINEMDLR-KYGSQGQQRTAAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA    + + TG  P+LLLD++ + LD  +R AL  I+ +   Q  +T TD      
Sbjct: 295 ALKLAELEFMKSETGEYPVLLLDDVFSELDSLRRKALINIIANK-IQTIITATDGENLSG 353

Query: 358 LNETA-KFMRISNHQA 372
           L   +    R+   + 
Sbjct: 354 LKNNSYHVYRVKEGKI 369


>gi|296137755|ref|YP_003644998.1| DNA replication and repair protein RecF [Tsukamurella paurometabola
           DSM 20162]
 gi|296025889|gb|ADG76659.1| DNA replication and repair protein RecF [Tsukamurella paurometabola
           DSM 20162]
          Length = 401

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 164/384 (42%), Gaps = 29/384 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++  + +      T+FVG NG GKTN++EA+++L+     R ++   +
Sbjct: 1   MYVRRLRLHDFRSWDDVDIELGPGVTVFVGRNGFGKTNLIEALNYLATLGSHRVSTDQPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+ S  +  A V       +++ +++    R+ +  +IN    R   +L   L+   
Sbjct: 61  IRVGTESA-TVLATVHNAG--RELTAEVDIVAGRANKA-RINTAPSRRPRDLLGILQSVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G    RRRFLD +     PR      D++R+++ R  LL   Y  +    
Sbjct: 117 FAPEDLSLVRGDPGGRRRFLDELAILRTPRIAAEKADYDRVLKQRTALLKTAYAAARRGG 176

Query: 181 -------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
                  +     + Q+A  G ++  AR+E++ AL   +         PH + +   +  
Sbjct: 177 PDAESMLATLDVWDVQLARFGAEMLAARLEVVAALQPHLTVAYGAL-APHSRAATMEYTS 235

Query: 234 GKFDQSF---------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
           G FD  F           L+E     L   R  +      L+GPHR DL +   ++    
Sbjct: 236 GLFDDEFGGDPATATVAELEEAMLAGLQRARSREIDRGVCLVGPHRDDLDLRLGNEPAK- 294

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
              S GE     + + LA   L+    G  P+LLLD++ A LD  +R AL  +  +    
Sbjct: 295 GFASHGESWSYALALRLASLELL-RAGGSDPVLLLDDVFAELDTKRRTALADVAAETEQV 353

Query: 345 IFMTGTDKSVFDSLNETAKFMRIS 368
           I      + +  +L   A+   ++
Sbjct: 354 IVTAAVPEDLPPTL--RARTFEVT 375


>gi|257485597|ref|ZP_05639638.1| recombination protein F [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011885|gb|EGH91941.1| recombination protein F [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 367

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   P+  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPAC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|323342251|ref|ZP_08082483.1| recombination protein F [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463363|gb|EFY08557.1| recombination protein F [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 361

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/366 (25%), Positives = 172/366 (46%), Gaps = 10/366 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L + +FRN ++L L F+    +FVGDNG GKTNI+E++ +LS GR FR +S   +
Sbjct: 1   MKVKNLELKQFRNISNLNLSFNKNINVFVGDNGQGKTNIIESLVYLSSGRSFRVSSDEYL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+  F S  A +E      ++ + L +    + + LQ+N   ++ + E      +  
Sbjct: 61  IQYGNE-FLSVIADIEDQNNTQNLKVVLSS----AGKYLQVNQQPLKKMTEFIGRCNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P     +S    +RRR +D  +  +  R+  ++    +L+  RN  L     D  +  
Sbjct: 116 FNPEDINFYSNSPRKRRREIDFELGKMSKRYLNQLSLSNKLLSERNAYLKNKNVDQDYLE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +  ++ +  + I   R + ++AL+ +I  Y    +     + L        +     LK
Sbjct: 176 ILTEKLVDASILIIEMRAKFVHALNPIINHYYHLLSDSKDHIVLHYKAPISLE---GDLK 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+   K+ D  + D   + T  G HR D I    D  + +   S G+++++++   LA  
Sbjct: 233 EQLLSKMQDSFQRDCDFKVTQNGIHRDDFIFMINDIPV-VNVSSQGQKRMLIIAFKLAIV 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            LI  +    PIL LD++ + LD  +R  +  ++ +   Q+F+T TD     S  + + F
Sbjct: 292 ELIFQSRKTYPILCLDDLFSELDNVRRERVLNVLHE-EMQVFITTTDLDYVKSKRDKSVF 350

Query: 365 MRISNH 370
             +S +
Sbjct: 351 KVVSGN 356


>gi|330881906|gb|EGH16055.1| recombination protein F [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 367

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPPPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCYASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|302185842|ref|ZP_07262515.1| recombination protein F [Pseudomonas syringae pv. syringae 642]
          Length = 367

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCLASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|297158794|gb|ADI08506.1| recombination protein F [Streptomyces bingchenggensis BCW-1]
          Length = 407

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 97/414 (23%), Positives = 165/414 (39%), Gaps = 50/414 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA   +      T FVG NG GKTN++EA+ +++     R ++ A +
Sbjct: 1   MHVTHLSLADFRSYARAEVALGPGVTAFVGPNGQGKTNLVEAVGYVATLGSHRVSADAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A VEG        ++LE    ++ R        +R  D L   LR   
Sbjct: 61  VRMGADRAVVRAAIVEGDRQQL---VELELNPGKANRARINRSSQVRPRDVL-GILRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELITARSPRMAGVRADYERVLKQRNTLLKTAALARRHGG 176

Query: 181 ----------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSL 228
                     S     +  +A  G ++   R+++I AL  L  +  ++       I    
Sbjct: 177 GRGSGGDGALSTLDVWDQHLARAGAELLAQRLDLIAALQPLTDKAYEQLAPGGGPIGFDY 236

Query: 229 TGFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
              +        +   L E+ +  L   RK +     TL+GPHR DLI+   +      +
Sbjct: 237 RSSVGDGLAAAGTREELYEQLSAALTAARKQEIERGVTLVGPHRDDLILRLGELPAK-GY 295

Query: 287 GSTGEQKVVLVGIFLAHARLISN-------------------------TTGFAPILLLDE 321
            S GE     + + LA   L+                                P+L+LD+
Sbjct: 296 ASHGESWSYALALRLASYDLLRADISWAPGGLSAEAAEAAGGGEAGAVRRAGEPVLVLDD 355

Query: 322 ISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           + A LDE +R  L  +V   G Q+ +T   +     +   A++  +S  +   +
Sbjct: 356 VFAELDERRRERLAELVA-PGEQVLVTAAVEDDVPGVLAGARY-AVSEGEVRPL 407


>gi|320321690|gb|EFW77789.1| recombination protein F [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331108|gb|EFW87079.1| recombination protein F [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 367

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCYASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|224538410|ref|ZP_03678949.1| hypothetical protein BACCELL_03304 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519969|gb|EEF89074.1| hypothetical protein BACCELL_03304 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 370

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 150/373 (40%), Gaps = 20/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F  +   F G NG+GKTN+L+AI FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAIYFLSFCKSSGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   +I   ++ R  +  +    N      + +    L + 
Sbjct: 61  IRHDQE-FFVIQGFYEAPDGTLEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-DSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL      +   
Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEVPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I+    +   +    +    ++ LT     +       
Sbjct: 177 FLIWEEMMAQAGEIVFRKREAFISEFIPIFQSFYSFISQDKEQVGLTYDSHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                   +   R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA
Sbjct: 231 --ASLLDVIKASRVRDQIMGYSLHGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRILHK 347

Query: 359 -NETAKFMRISNH 370
                K  ++   
Sbjct: 348 VGSDYKMFQVDQG 360


>gi|189467918|ref|ZP_03016703.1| hypothetical protein BACINT_04310 [Bacteroides intestinalis DSM
           17393]
 gi|189436182|gb|EDV05167.1| hypothetical protein BACINT_04310 [Bacteroides intestinalis DSM
           17393]
          Length = 370

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 151/373 (40%), Gaps = 20/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F  +   F G NG+GKTN+L+AI FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEQVELSFSPKLNCFFGQNGMGKTNLLDAIYFLSFCKSSGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E ++G   +I   ++ R  +  +    N      + +    L + 
Sbjct: 61  IRHDQE-FFVIQGFYEALDGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-DSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL      +   
Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEVPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I+    +   +    +    ++ LT     +       
Sbjct: 177 FLIWEEMMAQAGEIVFRKREAFISEFIPIFQSFYSFISQDKEQVGLTYDSHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                   +   R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA
Sbjct: 231 --ASLLDVIKASRVRDQIMGYSLHGIHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGTAVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDRILHK 347

Query: 359 -NETAKFMRISNH 370
                K  ++   
Sbjct: 348 VGSDYKMFQVDQG 360


>gi|146305045|ref|YP_001185510.1| recombination protein F [Pseudomonas mendocina ymp]
 gi|166220724|sp|A4XN62|RECF_PSEMY RecName: Full=DNA replication and repair protein recF
 gi|145573246|gb|ABP82778.1| DNA replication and repair protein RecF [Pseudomonas mendocina ymp]
          Length = 367

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 158/374 (42%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + ++  RN   + L    +  I  G NG GKT++LEAI  L   R FR      V
Sbjct: 1   MSLSRIMVTAVRNLHPVTLSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSTRLQPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                P+  + F +V+  EG  +++ I   +RD +    ++I+    R   +L   L + 
Sbjct: 61  IHYEQPAC-TVFGQVQLAEGGSSNLGI---SRDRQGELQIRIDGQNARSAAQLADLLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++ R        ++ +R RN  L  G  D +  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEHRFLGAWQRLQKALRQRNSWLRHGTLDGASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +    +  E      L+L+ +     D+     
Sbjct: 177 AAWDRELCSASQEIDTYRRAYIQALKPVFERTLA-ELLQLEGLTLSYYRGWDKDR----- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             E ++ L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 231 --ELSEVLASSLLRDQQLGHTQAGPQRADLRLRLAGHN-AAEILSRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L++       I L+D++ + LDE  R AL R++ D+  Q+F+T  D  +       + 
Sbjct: 288 GHLVNEAKRGQCIYLVDDLPSELDEQHRQALCRLLEDLHCQVFITCVDHELLREGWHTDT 347

Query: 361 TAKFMRISNHQALC 374
                 + + +   
Sbjct: 348 PVAMFHVEHGRITQ 361


>gi|319901304|ref|YP_004161032.1| DNA replication and repair protein RecF [Bacteroides helcogenes P
           36-108]
 gi|319416335|gb|ADV43446.1| DNA replication and repair protein RecF [Bacteroides helcogenes P
           36-108]
          Length = 369

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 153/373 (41%), Gaps = 20/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F A+   F G NG+GKTN+L+AI FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEQVELSFSAKLNCFFGQNGMGKTNLLDAIYFLSFCKSAGNPVDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               +  FF      E  +G   +I   ++ R  +  +    N      + +    L + 
Sbjct: 61  ICHDAD-FFVIQGGYESTDGTPEEIYCGMKRRQKKQFKR---NKKEYTRLSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-DSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL      +   
Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALVQRNTLLKSEQLVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I     +   +    +    ++ LT     +       
Sbjct: 177 FLIWEEMMAQAGEVVFRKREAFIQEFIPIFQSFYSFISQDKERVGLTYDSHAR------- 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                ++ L + R  D +   +L G H+ +L +   D  I    GS G+ K  LV + LA
Sbjct: 230 -NASLSEVLKESRMRDQIMGYSLRGVHKDELNMLLGDFPIKRE-GSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGTTVPLLLLDDIFDKLDASRVEQIIKLVAGDNFGQIFITDTNREHLDCILHK 347

Query: 359 -NETAKFMRISNH 370
                K  R+   
Sbjct: 348 VGSDYKMFRVDQG 360


>gi|29349663|ref|NP_813166.1| DNA repair protein RecF [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569966|ref|ZP_04847375.1| DNA replication and repair protein recF [Bacteroides sp. 1_1_6]
 gi|298383927|ref|ZP_06993488.1| RecF protein [Bacteroides sp. 1_1_14]
 gi|51316448|sp|Q89ZW6|RECF_BACTN RecName: Full=DNA replication and repair protein recF
 gi|29341573|gb|AAO79360.1| DNA replication and repair protein RecF, ABC family ATPase
           [Bacteroides thetaiotaomicron VPI-5482]
 gi|251840347|gb|EES68429.1| DNA replication and repair protein recF [Bacteroides sp. 1_1_6]
 gi|298263531|gb|EFI06394.1| RecF protein [Bacteroides sp. 1_1_14]
          Length = 369

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 152/373 (40%), Gaps = 20/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + + F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEQVEIGFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   +I   ++ R  +  +    N        +    L + 
Sbjct: 61  IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL      +   
Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I     +   +    +    ++ L+     +       
Sbjct: 177 FLVWEEMMAQAGEIVFRKREAFIEEFIPIFQSFYSFISQDKEQVGLSYDSHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L   R+ D +   +L G H+ +L +   D  I    GS G+ K  LV + LA
Sbjct: 231 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGDFPIK-KEGSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D + + 
Sbjct: 288 QFDFLKRTGQTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILQK 347

Query: 362 ----AKFMRISNH 370
                K  R+   
Sbjct: 348 VGSDYKVFRVDQG 360


>gi|330970327|gb|EGH70393.1| recombination protein F [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 367

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMITWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSIHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|293400052|ref|ZP_06644198.1| DNA replication and repair protein RecF [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306452|gb|EFE47695.1| DNA replication and repair protein RecF [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 366

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 87/368 (23%), Positives = 165/368 (44%), Gaps = 9/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  + + +FRNY  L+ VF     +  G N  GKTN+LEA+ +LS  R  R  +  D+
Sbjct: 1   MRVSEIRLHDFRNYEDLQAVFSDGIHVLAGKNAQGKTNLLEALLYLSTTRSHRTNTDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S +FF   A++E      DI I +    +   + L I    +  V +         
Sbjct: 61  IREKSEAFF-IRAKIEKEHKKEDIQITV----NEKGKNLFIYQNPVNRVSDFIGEFNAVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +F+     RRRF+D  +  I  ++   +    +L++ RN  L + + D ++  
Sbjct: 116 FCPDDMSLFNASPRVRRRFVDMELSKISKKYVSTLYVALKLLKERNAYLKQEHVDKAYLE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            + +Q+ E  V I   R   +  L     ++ ++ +     L+++      FD+    +K
Sbjct: 176 VLTSQLIEEEVVIIRQRHYFLKELLEKCQKFYKELSQDDTLLNISYDSCIPFDEDKNVMK 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E   KK       D   ++T+IG H+ D      DK +   + S G+++ VL+ + +   
Sbjct: 236 EALKKKYAKHLARDIYLKQTIIGIHKEDFTFMINDKDL-ATYASQGQKRSVLLALKIGMV 294

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--TA 362
            +I +     P+LLLD++ + LD  +R  L   +     QIF++ TD +  + + +    
Sbjct: 295 YMIRDIIQEFPVLLLDDVFSELDVYRREKLLTSLPA-EVQIFISTTDTTEAEKIRKLRKV 353

Query: 363 KFMRISNH 370
              +++N 
Sbjct: 354 TLWKVANG 361


>gi|255324006|ref|ZP_05365131.1| DNA replication and repair protein RecF [Corynebacterium
           tuberculostearicum SK141]
 gi|255298863|gb|EET78155.1| DNA replication and repair protein RecF [Corynebacterium
           tuberculostearicum SK141]
          Length = 403

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/380 (24%), Positives = 162/380 (42%), Gaps = 26/380 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++ +FR++  L +      T+FVG NG GKTNI+EAI + +     R +  A +
Sbjct: 1   MYVRDLDVRDFRSWPELNVQLGPGITLFVGRNGFGKTNIVEAIGYTAHLSSHRVSYDAPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+ S   S  A  +G E    + IK       +    QIN   +R   EL   ++  
Sbjct: 61  VRQGADSARVSITAVNQGRELTTHLLIK-----PHAANQAQINRTRLRSPRELLGVVKTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174
              P    +  G    RR +LD ++ +  PR      D++++++ RN LL          
Sbjct: 116 LFSPEDLALVRGEPAGRRAYLDSIIASRTPRLAGVKADYDKVLKQRNALLKSASASLRRG 175

Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228
               +G    +   + +AQ+A LG ++  AR+ +++AL   I               +  
Sbjct: 176 YSNSDGAAALATLDTWDAQLARLGAQVIAARLALVDALLDHIPAAYSGLAPESRPAHVEY 235

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
              +D    +   A+      +L   R+ +     +L+GPHR DL+++  D+       S
Sbjct: 236 KSTIDTSDREVLEAV---LLTELAAARQREIERGISLVGPHRDDLVLNLGDQPAK-GFAS 291

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  +  +   Q+ +T
Sbjct: 292 HGETWSYAIALRLAEFNLLRQEGGSDPVLILDDVFAELDAKRRKQLVHLAAEAE-QVLIT 350

Query: 349 GTDKSVFDSLNETAKFMRIS 368
                      E     R+S
Sbjct: 351 AAVDEDLPGNLEPIVRYRVS 370


>gi|302520519|ref|ZP_07272861.1| recombination protein F [Streptomyces sp. SPB78]
 gi|318058968|ref|ZP_07977691.1| recombination protein F [Streptomyces sp. SA3_actG]
 gi|302429414|gb|EFL01230.1| recombination protein F [Streptomyces sp. SPB78]
          Length = 387

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/393 (24%), Positives = 156/393 (39%), Gaps = 34/393 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y    +  +   T FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYERAEVSLEPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+   F   A  +G        ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRAGAERAFVRAAVTQGERSQL---VELEINPGRANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARHPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233
              D S     +  +A  G ++   R ++I AL  L+ +  ++         L       
Sbjct: 177 RTLDLSTLDIWDQHLARAGAELLARRTDLIAALQPLVDKTYEQLAPGGGPALLEYRPSAP 236

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           G   Q       +    L + RK +     TL+GPHR   ++          + S GE  
Sbjct: 237 GT-AQGREEFYAQLLAALGEVRKQEIERGVTLVGPHRD-DLLLKLGDLPAKGYASHGESW 294

Query: 294 VVLVGIFLAHARLISNT-------------TGFAPILLLDEISAHLDEDKRNALFRIVTD 340
              + + LA   L+                    P+L+LD++ A LD  +R+ L   V  
Sbjct: 295 SYALALRLASYDLLRAEPWAPQTAPGPEGQRSGEPVLILDDVFAELDARRRDRLAEHVAS 354

Query: 341 IGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372
            G Q+ +T   ++ V   L        +S    
Sbjct: 355 -GEQVLVTAAVEEDVPAPL--KGTRYAVSEGTV 384


>gi|298484611|ref|ZP_07002716.1| DNA recombination and repair protein RecF [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298160868|gb|EFI01884.1| DNA recombination and repair protein RecF [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 367

 Score =  291 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 162/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +        +   S G+QK+V+  + +A 
Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHN-AVDILSRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|77456231|ref|YP_345736.1| recombination protein F [Pseudomonas fluorescens Pf0-1]
 gi|97180883|sp|Q3KKF9|RECF_PSEPF RecName: Full=DNA replication and repair protein recF
 gi|77380234|gb|ABA71747.1| DNA replication and repair protein RecF [Pseudomonas fluorescens
           Pf0-1]
          Length = 367

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 157/374 (41%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   +      +  I  G NG GKT++LEAI  L   R FR      V
Sbjct: 1   MSLSRVSVTAVRNLHPVTFSPSPRINILYGANGSGKTSVLEAIHLLGLARSFRSTRLLPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F +VE  EG    + I   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQLAC-TVFGQVELAEGGHSALGI---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D+   
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAVSQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           +  + ++ +   +I+  R   I AL  +  + +  E      L+L+ +     D+   A+
Sbjct: 177 AVWDRELCQASAEIDEYRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKDRELSAV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L    + D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LAGSVQRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LDE  R AL R++ D+  Q+F+T  D  +         
Sbjct: 288 GHLVSQARRGQCIYLVDDLPSELDESHRRALCRLLEDLRCQVFITCVDHELLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|317123181|ref|YP_004097293.1| DNA replication and repair protein RecF [Intrasporangium calvum DSM
           43043]
 gi|315587269|gb|ADU46566.1| DNA replication and repair protein RecF [Intrasporangium calvum DSM
           43043]
          Length = 424

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/410 (20%), Positives = 150/410 (36%), Gaps = 47/410 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y    + F    T  +G NG GKTN++EAI +L+     R A+   +
Sbjct: 1   MHVRHLTLKDFRSYPGAEIAFSPGVTTLIGLNGQGKTNLVEAIGYLATLGSHRVAADQPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       A + G     +  I+LE    R+ R  ++    +    ++   LR   
Sbjct: 61  VRFGASQAIVRGAVMSGG---HETMIELEITPGRANRA-RLGRAPVSRPRDVLGTLRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++    PR      D++++++ RN LL           
Sbjct: 117 FAPEDLALVKGDPSERRRFLDDLLVQRQPRWAGVRADYDKIVKQRNALLKSAAPVLRPGR 176

Query: 179 ----------------DS----------SWCSSIEAQMAELGVKINIARVEMINALSSLI 212
                           D                    +A +G ++  AR+ ++  L   +
Sbjct: 177 RGSGGGGRAAARSRPGDPPVDEARESALHTLDVWNEHLATVGSQLLYARLRLLRDLRPDL 236

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFD----------QSFCALKEEYAKKLFDGRKMDSMSR 262
                  +      +         +               L++     L   R  +    
Sbjct: 237 SASYDAVSASEAGATAQYKSSLHEEAAARLAAGEVPEIPELRQSLLDSLAAVRGAEIERG 296

Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
             L+GPHR D+++   +      + S GE     +G+ LA  RL++   G  P+L+LD++
Sbjct: 297 VGLVGPHRDDVVLTLGNLPAK-GYASHGESWSFALGLKLAAYRLLARDLGDDPVLVLDDV 355

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
            A LD  +R  L  ++ D    I        V   L E      +   Q 
Sbjct: 356 FAELDSGRRERLAELIGDCEQVIITAAVGADVPVQLRERGHTYEVELGQI 405


>gi|24371610|ref|NP_715652.1| DNA replication and repair protein RecF [Shewanella oneidensis
           MR-1]
 gi|51316466|sp|Q8EKT0|RECF_SHEON RecName: Full=DNA replication and repair protein recF
 gi|24345360|gb|AAN53097.1|AE015452_10 DNA replication and repair protein RecF [Shewanella oneidensis
           MR-1]
          Length = 360

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 160/373 (42%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI  FRN    +L       +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLIRLNIDSFRNIQLAQLSPSEGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                    + FA +    G + I ++     +  V+   I+   ++ +  L + L I  
Sbjct: 61  INNDQDK-LTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  DP+     ++  R+++ RN++L  G        
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHTDPQFYAAWMNVRRVLKQRNQMLRNGSP-YDQIQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +      ++   R   +++L+ L+   +  E  P + + ++              K
Sbjct: 176 YWDREFIRYTEQVTEIRNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++A+ L      D  +  T+ GPH++DL +         A  S G+ K+++  + +A  
Sbjct: 228 TDFAQLLESQYPRDLATGHTVSGPHKADLRLRVGTLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362
           +L+        I L+D++ + LD   R  L + + D G+Q+F+T  + +   DSL+   +
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHTPPS 346

Query: 363 KFMRISNHQALCI 375
           +   + + +   I
Sbjct: 347 RMFHVEHGRVTVI 359


>gi|312892157|ref|ZP_07751654.1| DNA replication and repair protein RecF [Mucilaginibacter paludis
           DSM 18603]
 gi|311295287|gb|EFQ72459.1| DNA replication and repair protein RecF [Mucilaginibacter paludis
           DSM 18603]
          Length = 366

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 81/375 (21%), Positives = 158/375 (42%), Gaps = 22/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  F+NY    ++ +     F G+NG GKTN+L+A+ +LS  + +     +  
Sbjct: 1   MYLKQLSLLNFKNYTQAEIILEPGVNAFAGNNGAGKTNLLDAVHYLSLCKSYFNPIDSQQ 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+  FF         +    I+  L+    +  +    N    + + +      +  
Sbjct: 61  IKQGAD-FFMVNGVFSKDDKAEVIACGLKRNQKKQFKR---NKKEYQRLADHIGLFPLVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P    I    S ERR+F+D ++   D  +   +I + +++  RN LL      G +D 
Sbjct: 117 ISPYDISIIIEGSEERRKFIDNVISQTDNGYLDELIAYNKILLNRNALLKLIADTGRYDP 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + Q+   G +I   R + +     +   + +  +     + L            
Sbjct: 177 QMLEVYDEQLVLSGTRIFEKRKKFMEVFIGIFNRHYRFISDEAEMVELNY--------ES 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L  ++A+ L    + D    RT  G H+ DL       A+    GS G+QK  L+ + 
Sbjct: 229 QLLTGDFAQLLKKSTERDRALERTTNGVHKDDLHFTIHGMAMK-KFGSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS----VF 355
           LA    ++   G+ P+LLLD+I   LDE++   L ++V++    Q+F+T T       +F
Sbjct: 288 LAQYTFLNEQKGYKPLLLLDDIFDKLDENRTRKLMQMVSNNDFGQVFITDTSGERVSRIF 347

Query: 356 DSLNETAKFMRISNH 370
           + L+   +  ++   
Sbjct: 348 NDLDVQIRIFKVDKG 362


>gi|319440152|ref|ZP_07989308.1| recombination protein F [Corynebacterium variabile DSM 44702]
          Length = 391

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 101/385 (26%), Positives = 168/385 (43%), Gaps = 28/385 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++ +FR++ASL L      T+F G NG GKTNI+EA+ +L+     R +  A +
Sbjct: 1   MYLRSLHLGDFRSWASLDLELTPGVTVFAGPNGNGKTNIVEAVGYLAHLSSHRVSGDAAL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G  S   S  A   G E  A + I     + R      +N   +R    L   +R +
Sbjct: 61  VREGCDSARVSATAVNHGRELTAHLVI-----NARGSNKAAVNRTSLRNQRGLAGIVRTT 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---S 180
              P    +  G   +RR FLD++V A  PR      D+++++R RN LL         +
Sbjct: 116 MFAPEDLALVRGEPEQRRHFLDQVVAARYPRLAGVRADYDKVLRQRNALLKSASSPVAVA 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFD 237
                 +AQ+A LG +I  ARV++++ L+  + E   +    + P + +S T  +D +  
Sbjct: 176 DTLDVWDAQLAHLGGEIMSARVQVVHDLAPHVEESYARLAPGSRPAL-ISYTSTVDAELA 234

Query: 238 Q-----------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                            +     +L   R  +     TL GPHR DL +           
Sbjct: 235 DVGVDPGGTYLVDPDVAEAVLLSRLAQRRNAEVERGITLTGPHRDDLQL-ILGTQPAKGF 293

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE     + + LA  R +    G  P+++LD++ A LD  +R AL  +  +   Q+ 
Sbjct: 294 ASHGESWSFALTLRLASHR-MQRADGTEPLVILDDVFAELDRARRRALVDLAGEAE-QVL 351

Query: 347 MT-GTDKSVFDSLNETAKFMRISNH 370
           +T   D+ +   L E A+   +  H
Sbjct: 352 ITAAVDEDIPADLREIAQVHAVRAH 376


>gi|120552948|ref|YP_957299.1| DNA replication and repair protein RecF [Marinobacter aquaeolei
           VT8]
 gi|166220714|sp|A1TWJ3|RECF_MARAV RecName: Full=DNA replication and repair protein recF
 gi|120322797|gb|ABM17112.1| DNA replication and repair protein RecF [Marinobacter aquaeolei
           VT8]
          Length = 373

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 86/378 (22%), Positives = 162/378 (42%), Gaps = 20/378 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L    FRN  S  + F     +  G NG GKT++LEAI +L  GR FR + +  V
Sbjct: 1   MALVKLQTQHFRNLLSAPVEFSPSFNLLYGANGSGKTSVLEAIGYLGLGRSFRVSRHQAV 60

Query: 65  TRIGSPSFFSTFARVEGM-----EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
              G        A   G+         +  I +          L+++   +R +  L  H
Sbjct: 61  VAHGQSKLTVFGALDSGLLAQESSEKVEHRIGISRDVSLKETQLRVDGEAVRSLSFLAMH 120

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           L +S + P +  I +G   +RR+FLD +VF ++P         +R+   RN++L  G  D
Sbjct: 121 LPVSVIDPGVFDIVAGGPGKRRQFLDWLVFHVEPSFSSLWQQVQRVTSQRNQMLRNGRLD 180

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK-LSLTGFLDGKFDQ 238
            S     ++Q   L   ++  R  +           + + + P ++ L +  +       
Sbjct: 181 ESLMRVWDSQYGALAESLSDIRETVFQRFKIAFESVLAELDAPWVEGLKMDFYPGWDRST 240

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           +   +       L + R+ +     TL GP+R+D+ + +  + +     S G+QK +++ 
Sbjct: 241 ALTEV-------LVNHREQERRMGHTLYGPNRADIRLKFGGRPVAETF-SRGQQKTLVIL 292

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + +A  +++S+  G     LLD+I+A LD   R  L R + ++  Q+F+T  +    D+L
Sbjct: 293 MKIAQGKVLSD-LGKQVTFLLDDINAELDVRHRVMLARNLQELRCQVFITSIEHPEPDTL 351

Query: 359 NETA-----KFMRISNHQ 371
                    +   + + Q
Sbjct: 352 WHDGDTPEYRMFHVEHGQ 369


>gi|294672977|ref|YP_003573593.1| DNA replication and repair protein RecF [Prevotella ruminicola 23]
 gi|294473002|gb|ADE82391.1| DNA replication and repair protein RecF [Prevotella ruminicola 23]
          Length = 366

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 154/375 (41%), Gaps = 23/375 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  ++N A   L F  +    +G NGVGKTN+L+AI +LS          + V
Sbjct: 1   MILEKLSVINYKNIAEATLDFSPKINCLIGQNGVGKTNVLDAIYYLSFCHSANNPIDSQV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+  FF      EG     D+ I    +     +  + N    R + E    + +  
Sbjct: 61  IRHGAE-FFVLEGAYEG-----DLHIYCGMKRGTK-KHFKRNKKEYRRLSEHIGLIPVVV 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + PS   +  G S ERRR +D ++   +  +   M  + + ++ RN +L  +   +    
Sbjct: 114 VSPSDTLLIEGGSEERRRLMDMVIAQYEHGYMEAMNRYNKALQQRNAMLKLDEEPNLDVI 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S  E QMA  G +I  +R   +  L+ +     +  +    +++L      +        
Sbjct: 174 SLFEEQMAYEGERIYKSRKAFVEELTPIFQRIHETISGNREQVALNYVSHCQRGP----- 228

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + +   R  D     +L G HR DL +      +    GS G+ K  ++ + LA 
Sbjct: 229 ---LLEVIQRDRFKDRAIGYSLHGVHRDDLEITLGGHLMKRE-GSQGQNKTFVIALKLAQ 284

Query: 304 ARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361
              +  T +   P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 285 FDFLKRTNSKTTPLLLLDDIFDKLDAQRVEQIVKLVAGDDYGQIFITDTNRDHLDLILSR 344

Query: 362 ----AKFMRISNHQA 372
                K   +   + 
Sbjct: 345 QTLDYKIFHVDKGEI 359


>gi|326329134|ref|ZP_08195462.1| RecF protein [Nocardioidaceae bacterium Broad-1]
 gi|325953021|gb|EGD45033.1| RecF protein [Nocardioidaceae bacterium Broad-1]
          Length = 382

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 89/385 (23%), Positives = 169/385 (43%), Gaps = 24/385 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+Y ++ +  +A  T FVG NG GKTN++EAI +LS  +  R A+ A +
Sbjct: 1   MYVSHLSLHDFRSYPNVEVPLEAGVTAFVGRNGQGKTNLVEAIDYLSRLQSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       A V         ++++E    R+ +  +IN   +    +L   +R   
Sbjct: 61  VRAGAEQAVVRAAVVRDGRTA---TLEVEINAGRANKA-RINKSPLPRTRDLVGLVRTVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G   +RRRFLD ++    PR      D++R+++ RN LL           
Sbjct: 117 FSPEDLTLVKGDPSDRRRFLDDLMILRAPRLAGVRSDYDRVLKQRNSLLKTAGLARGSAR 176

Query: 181 ----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGFL 232
               +  +  +  +A +G +I   R+ ++ AL   + +  +      +    +++    +
Sbjct: 177 EGALATLAVWDDHLATIGAEILSQRLSLVEALKPYVGKAYETVARGASRDDAEITYKPVV 236

Query: 233 D--GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHG 287
           +       S   L++   ++L   +K +     +L+GPHR DL++     A       + 
Sbjct: 237 ELVETTTPSVETLRQAILEELARRQKDELDRGISLVGPHRDDLLLHISAGAERLPVKGYA 296

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE     + + LA   L+    G  PIL+LD++ A LD  +R  L  +V D   Q+ +
Sbjct: 297 SHGESWSFALALRLAAYDLL-RADGDDPILILDDVFAELDSQRRVQLAELVADAE-QVLV 354

Query: 348 TGTDKSVFDSLNETAKFMRISNHQA 372
           T        +    A++  +   + 
Sbjct: 355 TAAVPEDVPAALAGARY-HVKAGEV 378


>gi|300781941|ref|YP_003762232.1| DNA replication and repair protein RecF [Amycolatopsis mediterranei
           U32]
 gi|299791455|gb|ADJ41830.1| DNA replication and repair protein RecF [Amycolatopsis mediterranei
           U32]
          Length = 384

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 99/391 (25%), Positives = 168/391 (42%), Gaps = 33/391 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR++    L  +   T+ VG NG GKTN+LEAI +++     R A+ A +
Sbjct: 1   MYLRHLQVTDFRSWPQADLALEPGPTVLVGQNGRGKTNLLEAIGYVATLGSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G        A V       +++++LE    R+ R       V R  D L   LR   
Sbjct: 61  IRHGCERALVRVAVVNDD---RELTVELEITAGRANRARVNRGAVGRPRDVL-GILRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------EGYF 178
             P    +  G   ERRRFLD ++    PR+     D+E++++ RN LL        G  
Sbjct: 117 FSPEDLALVRGDPGERRRFLDELLVLRAPRYAGVRADYEKVLKQRNALLKTAGKRRTGRE 176

Query: 179 DS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV---QKENFPHIKLSLTGFL 232
           D    S     +  +AE G ++  AR+ ++  L+            ++ P  K++    L
Sbjct: 177 DPYALSTLEVWDDHLAEAGAELLAARLNLVADLAPHAASAYMGVAPDSRP-AKITYRSSL 235

Query: 233 DGKFDQSF----------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
                +++            LK+   K L + RK +     +L+GPHR +L +    +A 
Sbjct: 236 GAAMPETYGVPDGERAQPEVLKDVLLKALGEARKAELERGISLVGPHRDELEL-ILGEAP 294

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              + S GE     + + L    L+    G  P+LLLD++ A LD  +R  L   V    
Sbjct: 295 AKGYASHGESWSFALALRLGSYELLRAEAGE-PVLLLDDVFAELDRKRRARLAE-VAASA 352

Query: 343 SQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372
            Q+ +T   D+ V   L  T     +++ + 
Sbjct: 353 EQVLVTAAVDEDVPGELAGT--RFVVADGEI 381


>gi|326388134|ref|ZP_08209737.1| recombination protein F [Novosphingobium nitrogenifigens DSM 19370]
 gi|326207300|gb|EGD58114.1| recombination protein F [Novosphingobium nitrogenifigens DSM 19370]
          Length = 395

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 139/369 (37%), Positives = 199/369 (53%), Gaps = 14/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FRN+A+ RL   A   + VG+NG GKTN+LEAIS  SPGRG RRA  AD+
Sbjct: 37  MALTRLSLRDFRNHAATRLDGMATFNVLVGENGAGKTNVLEAISLFSPGRGMRRAHPADM 96

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                   F+  A +E      + +    T   R+VR   IN         L + L ++W
Sbjct: 97  ASNKGAGDFAVAAELEDGAVQLNTATTPATPGRRTVR---INGAET-PATRLAEWLAMTW 152

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
           L P+MDR+F+  +  RRRFLDR+V A +P H R    +E  +R RNRLL E    D  W 
Sbjct: 153 LTPAMDRLFAEGATARRRFLDRLVLAGEPGHARIATRYEGALRERNRLLGEADEPDPVWL 212

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            ++E QMAE G ++  +R  ++  L++ +     +++ P  +  L    +   D S    
Sbjct: 213 DALETQMAETGAQLAASRRALVERLNTALA---AQDDGPFARPILAYNGETPVDAS---- 265

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              +A  L +GR+ D  + RTL GPHR DL V    K    AH STGEQK +L+ I LAH
Sbjct: 266 --AFAAALRNGRRRDRAAGRTLTGPHRDDLDVVMAAKNAPAAHCSTGEQKALLISIVLAH 323

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           A L         +LLLDEI+AHLD  +R+AL+  +   G+Q++MTGT+ S F  L   A 
Sbjct: 324 AALPDAGGERPRLLLLDEIAAHLDPLRRSALYERLAASGAQVWMTGTEPSPFADLPAPAA 383

Query: 364 FMRISNHQA 372
           F R+   + 
Sbjct: 384 FWRVDEGKV 392


>gi|62185059|ref|YP_219844.1| recombination protein F [Chlamydophila abortus S26/3]
 gi|81312775|sp|Q5L648|RECF_CHLAB RecName: Full=DNA replication and repair protein recF
 gi|62148126|emb|CAH63883.1| DNA replication and repair protein [Chlamydophila abortus S26/3]
          Length = 367

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 153/368 (41%), Gaps = 10/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRNY    +          G+N  GKTN++EA+  LS GR FR +   + 
Sbjct: 1   MNILSLRLKNFRNYKEAEVSLSPNINYIFGENAQGKTNLIEALYVLSLGRSFRTSHLTEA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              GS  FF     +E       +   L T  D+  + +  +   I+ + +L   + I  
Sbjct: 61  IFFGSSYFF-----LEMTFEKDGVPHTLSTYVDKHGKKIFCDQSPIKTLSQLIGMIPIVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  + +G   +RR FL+ ++   DP+++  +  + R +  RN LL      +S  S
Sbjct: 116 FSAKDRCLIAGAPSDRRLFLNLLLSQCDPQYKHSLSYYHRALLQRNTLLKTKQ--TSTLS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+A LG  + ++R      L+ LI           + +     L  +   S  A+K
Sbjct: 174 VWDEQLATLGSYLCLSRYTCCAQLNQLIQTLWNNSLSERLFIKFKSSLIKQCKISQEAVK 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            E  K+L      D     T +GPHR D  +   D  +     S G++  +L  + LA +
Sbjct: 234 NELHKQLTASLHRDLELGNTSVGPHREDFTLMINDLPV-AQFSSEGQKHSLLAVLKLAES 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             I +     P+  +D+I A LD  + + L  +   +G Q  +T T      +L+E  + 
Sbjct: 293 LYIKSLHNVYPLFCMDDIHAGLDNQRISQLLGLAPSLG-QTLITSTTLPH-QTLSEANRI 350

Query: 365 MRISNHQA 372
             ++  Q 
Sbjct: 351 FSVNQAQI 358


>gi|157373149|ref|YP_001471749.1| DNA replication and repair protein RecF [Shewanella sediminis
           HAW-EB3]
 gi|189039644|sp|A8FP48|RECF_SHESH RecName: Full=DNA replication and repair protein recF
 gi|157315523|gb|ABV34621.1| DNA replication and repair protein RecF [Shewanella sediminis
           HAW-EB3]
          Length = 360

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 163/373 (43%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I  FRN  S +L+      +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLTRLHIETFRNITSAQLLPGEGINLIYGHNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  S    + FA +  ++  + I ++     +  V+   I+   ++ +  L + L I  
Sbjct: 61  IQH-SDDKLTLFANLNVLDKESKIGLRRFRSGETEVK---IDGDKVKRLSTLAESLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  D       ++ +R+++ RN+LL       S   
Sbjct: 117 ITPESFALLFEGPKSRRQFIDWGAFHCDKSFHSAWVNVKRILKQRNQLLKNETS-YSQIQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++      +   R   +N+L+  +   +  E  P + + ++              K
Sbjct: 176 FWDKELVRYSEVVTDIRTRYVNSLNEQLKGII-GEFLPLVDVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L      D  S  T  GPH++DL +      +  A  S G+ K+++  + +A  
Sbjct: 228 TDYAQLLEMQYPRDLASGNTGSGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL-NETA 362
           +L+        I L+D++ A LD   R  L + + D G+Q+F+T  +  ++ DSL    +
Sbjct: 287 KLLKQQIDKNSIYLVDDLPAELDAKHRQLLLQQLIDTGAQVFVTAIEPAAILDSLITPPS 346

Query: 363 KFMRISNHQALCI 375
           K   + + +   I
Sbjct: 347 KTFHVEHGRVTVI 359


>gi|258646401|ref|ZP_05733870.1| DNA replication and repair protein RecF [Dialister invisus DSM
           15470]
 gi|260403802|gb|EEW97349.1| DNA replication and repair protein RecF [Dialister invisus DSM
           15470]
          Length = 355

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 94/367 (25%), Positives = 166/367 (45%), Gaps = 14/367 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++    ++ E RN+    +      T+  G NG GKTNI+E+I F S G+ FR ++  ++
Sbjct: 1   MRCGKTHLIEIRNFEDFSIDPAENMTVLTGKNGTGKTNIIESIYFASVGKSFRTSNDEEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+      +            +I IKL        + + IN+   +   EL    R   
Sbjct: 61  IRLNKEEG-TILLDFSVRGVTHEIKIKLSRN---KGKKILINETATKK-RELMGMFRTVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182
             P   ++  G    RRRF+D  +  + PR+   ++ + R ++ RN    E  F   ++ 
Sbjct: 116 FTPDDLQLIKGAPQNRRRFIDLEISQVSPRYYEEILRYGRAVQQRNAAFKEARFHGFTAD 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+A+    I   R+E I  ++ ++             + +     G  ++ F  
Sbjct: 176 VDVWDMQIAKGASYIVKKRMETIGKINEIVSSMESLLTDEKESILIKYRKSGNQEERFD- 234

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            +E Y +KL   R+ DS    T IGPHR DLI       I+ ++GS G+Q+  ++ + LA
Sbjct: 235 -EEWYLEKLALSREEDSRFCHTSIGPHRDDLIFLMNGNDIS-SYGSQGQQRTAILSVKLA 292

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
               +   TG  P+LLLD++ + LD+++R+ALF  + +   Q  +T  D    +SL    
Sbjct: 293 ELEFVKKETGEYPLLLLDDVGSELDKERRDALFSYLIEKEIQTIITTAD----ESLGAYG 348

Query: 363 KFMRISN 369
           K ++I  
Sbjct: 349 KEIKIEG 355


>gi|224541291|ref|ZP_03681830.1| hypothetical protein CATMIT_00451 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525795|gb|EEF94900.1| hypothetical protein CATMIT_00451 [Catenibacterium mitsuokai DSM
           15897]
          Length = 364

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 159/372 (42%), Gaps = 20/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK LN+ +FRNY      F     I +GDN  GKTNILEAI  LS  R F+     ++
Sbjct: 1   MEIKTLNLIQFRNYEKQTFHFHPLVNIIIGDNAQGKTNILEAIYLLSTTRSFKSRMLDEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                     ++ RV G          L+    +  +   IND  +    +   +  +  
Sbjct: 61  IMFDQ-----SYTRVSGHIVNGTRPYDLKVVVSKEGKKAFINDKAVSKTSDYLGYFNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSS 181
             P   ++  G    RR  +D  +  I P +   +  + +LM+ RN+ L    +G+ +  
Sbjct: 116 FTPQDLQLIKGSPKMRRTLIDTEISKISPIYMFNLNKYNKLMKERNKYLKMLYDGHKEPD 175

Query: 182 -WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +  +MAEL   +   R++ I  L+ +  +     +    KL L      K     
Sbjct: 176 MYLEVLSEEMAELEEDLIQRRMKFIELLNEISGQMYAYISG-KEKLVLRYHTQFK----- 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              KE    K     K D     T+ G H+ DL + + D+       S G+Q+ +++ + 
Sbjct: 230 DISKEGILDKYKKNYKRDIFQGTTVDGIHKDDLKI-FLDENDAGMFASQGQQRSIILSMK 288

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSL 358
           +A   ++    G  P+LLLD++ + LDE+++  L  ++     Q F+T T  D     SL
Sbjct: 289 IALVEIVKMQIGEYPVLLLDDVLSELDEERKMKLLNLIDHK-VQTFITTTHFDLGYHHSL 347

Query: 359 NETAKFMRISNH 370
           ++ A  +RI   
Sbjct: 348 DD-ALVLRIEKG 358


>gi|91791372|ref|YP_561023.1| DNA replication and repair protein RecF [Shewanella denitrificans
           OS217]
 gi|123357292|sp|Q12TC6|RECF_SHEDO RecName: Full=DNA replication and repair protein recF
 gi|91713374|gb|ABE53300.1| DNA replication and repair protein RecF [Shewanella denitrificans
           OS217]
          Length = 360

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 164/373 (43%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++I  FRN A+  L+      +  G NG GKT++LEAI FL  GR FR      V
Sbjct: 1   MSLQRISIESFRNIAAANLLPSEGLNLIYGHNGSGKTSVLEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R       + FA++    G + + ++     +  V+   I+   ++ +  L + L I  
Sbjct: 61  IRHDEDK-LTLFAQLSHHNGESKVGLRRHRNGEIEVK---IDGDRVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  D +      + +R+++ RN+LL  G    +   
Sbjct: 117 ITPESFSLLFEGPKARRQFVDWGAFHSDEQFYTAWSNVKRILKQRNQLLRNGSSYGNIL- 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++     ++   R   +++L+ L+   ++ E  P + +S++             L 
Sbjct: 176 FWDKELVRYAEQVTQIRNHYVDSLNELLKGIIE-EFLPQVNISISFTRGWDSKTDLALL- 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L      D  +  T+ GPH++DL +   +  +  A  S G+ K+++  + +A  
Sbjct: 234 ------LESQYSRDLATGHTVSGPHKADLRLRVGNLPVQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA- 362
           +L+        I L+D++ + LD   R  L + +T+ G+QIF+T  + +   DSL     
Sbjct: 287 KLLKQQKDKQSIYLVDDLPSELDAQHRQLLLKQLTETGAQIFVTAIEPAAIVDSLASPPN 346

Query: 363 KFMRISNHQALCI 375
           K   +   +   I
Sbjct: 347 KVFHVEQGRVTVI 359


>gi|260428922|ref|ZP_05782899.1| DNA replication and repair protein RecF [Citreicella sp. SE45]
 gi|260419545|gb|EEX12798.1| DNA replication and repair protein RecF [Citreicella sp. SE45]
          Length = 368

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 122/361 (33%), Positives = 187/361 (51%), Gaps = 13/361 (3%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FR++    +  DA+     G NG GKTN++EA+S LSPGRG RRA+  ++ R      + 
Sbjct: 13  FRSHRRAEIAVDARPVAIYGPNGAGKTNLIEAVSLLSPGRGMRRAAAQEIARRPEALGWR 72

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             A +   +G+ +I I+ E     + R + I+         L +  R+ WLVPSMDR++ 
Sbjct: 73  IGAELHAPDGVHEIDIRAEAG---AARQVSIDGKPA-PQTALARITRVLWLVPSMDRLWI 128

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
                RRRFLDRM  +  P H    + +E+ MR RNRLL +   D+ W +++E QMA+ G
Sbjct: 129 EAPEGRRRFLDRMTLSFFPDHADASLTYEKAMRERNRLLKDQVRDAHWYAALEGQMAQAG 188

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            ++   R            +   +  FP  +L L        +       E     L + 
Sbjct: 189 AQLQSNRQA--ALARLAQAQEGAETQFPAAELELVST-----EADIPETAEGLRAALSES 241

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
           R  D  + RTLIGPHR+DL   +  K ++ +  STGEQK +L+ + LA+AR ++   G  
Sbjct: 242 RFRDMAAGRTLIGPHRADLHGVFAAKGVSASDCSTGEQKALLISLILANARALAADLGAP 301

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI--SNHQA 372
           PILLLDE++AHLD  +R AL+  +  +G+Q +MTGT   +F  L   A+ + +     Q+
Sbjct: 302 PILLLDEVAAHLDAGRRAALYDEICALGAQAWMTGTGPELFGELGARAQRLEVREEGGQS 361

Query: 373 L 373
            
Sbjct: 362 F 362


>gi|253698659|ref|YP_003019848.1| DNA replication and repair protein RecF [Geobacter sp. M21]
 gi|259563661|sp|C6E7Q7|RECF_GEOSM RecName: Full=DNA replication and repair protein recF
 gi|251773509|gb|ACT16090.1| DNA replication and repair protein RecF [Geobacter sp. M21]
          Length = 364

 Score =  290 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 162/371 (43%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L ++ FRN  ++ L    +  +F G+NG GKTN+LE+I  L+  + F++A  A++
Sbjct: 1   MKLIKLKLASFRNLQNIELAPGKKFNVFYGNNGQGKTNLLESIYLLATMKSFKQARNAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       FA V+G      +  ++    ++  +  +++  ++  +D+   +L +  
Sbjct: 61  IAFGGE-----FALVKGTVERDQVRREIAVLIEKQGKKAKVDAKLMTRLDDFFGNLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RRR+LDR VF  D  +     D+ ++++ RN LL     +++   
Sbjct: 116 FTPEEISMVRGGPDLRRRYLDRAVFTCDLGYLTAYHDYAKILKNRNALLK--VNETAGIE 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL- 243
               Q+ +  + +   R   ++ +  L+  +  + +     + +   L G   + F    
Sbjct: 174 VWTEQLVQAALLVIERRKAYLDRIGRLLQGFYSEISGNDETVQIEYRLHGVDARLFAEDP 233

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E   + L      +     T IGPHR DL      +       S G+Q+  ++ + +A 
Sbjct: 234 AEALNQALRAHAAEERRRGSTAIGPHRDDLYFGLNGRG-ARQFASQGQQRSFVLALKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETA 362
              I+      P+LLLD++++ LD ++   L   +     Q+F+T T     D    +  
Sbjct: 293 IEHITRCFEAPPVLLLDDMTSELDRERNRNLMEFLKKREMQVFITTTSLHNVDVDELQDN 352

Query: 363 KFMRISNHQAL 373
           +  RI   + L
Sbjct: 353 RTFRIKEGKIL 363


>gi|153807585|ref|ZP_01960253.1| hypothetical protein BACCAC_01867 [Bacteroides caccae ATCC 43185]
 gi|149129947|gb|EDM21159.1| hypothetical protein BACCAC_01867 [Bacteroides caccae ATCC 43185]
          Length = 369

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 149/373 (39%), Gaps = 20/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + + F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEEVEIDFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   +I   ++ R  +  +    N        +    L + 
Sbjct: 61  IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYGRFSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL      +   
Sbjct: 117 MVSPADSELIAGGSEERRRFMDVVISQYDKEYLDALIRYNKALAQRNTLLKSEFPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I     +   +    +     + L+     +       
Sbjct: 177 FLVWEEMMAQAGEVVFRKREAFIKEFIPIFQSFYSFISQDKESVGLSYESHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                   L   R+ D +   +L G H+ +L +   +  I    GS G+ K  LV + LA
Sbjct: 231 --TSLLDVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDSFGQIFITDTNREHLDRILHK 347

Query: 359 -NETAKFMRISNH 370
                K  R+   
Sbjct: 348 VGSDYKIFRVEQG 360


>gi|160932421|ref|ZP_02079811.1| hypothetical protein CLOLEP_01256 [Clostridium leptum DSM 753]
 gi|156868380|gb|EDO61752.1| hypothetical protein CLOLEP_01256 [Clostridium leptum DSM 753]
          Length = 368

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 156/372 (41%), Gaps = 10/372 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L   ++RN     L+   Q  +  GDN  GKTN+LEA+   + GR FR A   ++
Sbjct: 1   MKVNRLGFRDYRNLKENELIPGPQVNVICGDNAQGKTNLLEAVWLFTGGRSFRGARDQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S +        E  E      I +     +  R  Q+N V       L        
Sbjct: 61  IAFSSRAGAVLALDFEAEEREQTAKITIGRGAKK--RAAQLNGVDQPAASSLIGKFCAVV 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
             P    +       RR+FLD  +    P + R +  + R +  RN LL +  + S    
Sbjct: 119 FSPDHLSLVKEGPSMRRKFLDAALCQRKPAYARLLSQYSRTLAQRNTLLKDISYHSELLE 178

Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + +++ LG  I I R   +  LS    E     +    + ++        D    
Sbjct: 179 TLEIWDEKLSGLGAAIIIERKRYLERLSEAAGEIYDGISQGRERFAVRYDSGLLRDGGEE 238

Query: 242 A-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
           A  +E     L +GRK D  +  T  GPHR DL+V   +K+    +GS G+Q+  ++ + 
Sbjct: 239 AGYRERLFSLLQNGRKEDLNAGFTTKGPHRDDLLVTVQEKS-AREYGSQGQQRSCVLALK 297

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA A L++   G  P++LLD++ + LD  +++ L   +   G Q+F+T  D +    L++
Sbjct: 298 LAEAALLAEALGEKPVILLDDVMSELDASRQDYLLNKIQ--GWQVFITCCDPNSISGLSQ 355

Query: 361 TAKFMRISNHQA 372
             +   + N + 
Sbjct: 356 -GRTFYVENGEI 366


>gi|282881520|ref|ZP_06290190.1| DNA replication and repair protein RecF [Prevotella timonensis CRIS
           5C-B1]
 gi|281304631|gb|EFA96721.1| DNA replication and repair protein RecF [Prevotella timonensis CRIS
           5C-B1]
          Length = 370

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 94/378 (24%), Positives = 159/378 (42%), Gaps = 23/378 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N     L F ++    +G NG GKTN+L+AI +LS  R       + +
Sbjct: 1   MLLKKISILNYKNIEVADLEFSSKLNCLIGHNGEGKTNLLDAIYYLSFCRSAFNPIDSQL 60

Query: 65  TRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              G   F    T+ R +G E L    +K  TR     +  + ND   + + E    + +
Sbjct: 61  ILHGRDFFSLQGTYLRDDGDEELIHCGLKRGTR-----KRFKRNDKDYKRLSEHIGLIPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSS 181
            ++ PS   +  G S ERRRFLD ++  ++  +   +  + + +  RN LL  E   D S
Sbjct: 116 IFVSPSDTILIEGGSEERRRFLDMVISQLNRTYIEHLSRYNKALAQRNALLKNEDAPDLS 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
               +E +MA  G  I   R   I     +        +  H ++SL      +      
Sbjct: 176 LLEILEQEMAVQGEAIFAIRQSFIEEFIPVFQSIYDSISGHHEEVSLQYISHAQRGP--- 232

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
                    +   R  D     +L G HR DL +   D  +    GS G+ K  ++ + L
Sbjct: 233 -----LLDVIQRDRMKDRAVGYSLHGVHRDDLQMMIGDYQMKRE-GSQGQNKTYVLALKL 286

Query: 302 AHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDSLN 359
           A    +  T+    P+LLLD+I   LD ++   +  +VT     QIFMT T+++  D + 
Sbjct: 287 AQFDFLQRTSSATQPLLLLDDIFDKLDAERVERIVDLVTSTTYGQIFMTDTNRAHLDRIL 346

Query: 360 E----TAKFMRISNHQAL 373
                  K   ++N   +
Sbjct: 347 SSHSFDYKLFVVNNGDIV 364


>gi|169627112|ref|YP_001700761.1| recombination protein F [Mycobacterium abscessus ATCC 19977]
 gi|169239079|emb|CAM60107.1| DNA replication and repair protein RecF [Mycobacterium abscessus]
          Length = 401

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 160/383 (41%), Gaps = 20/383 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
             + ++ L + +FR++  + L  +   T+FVG NG GKTN++EA+ + S     R A+ A
Sbjct: 18  TEVYVRQLGLRDFRSWERVNLELEPGRTVFVGPNGYGKTNLVEALWYSSTLGSHRVATDA 77

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            + R G+     +   V       +++I LE    R+ +  ++N   +R   E+   L  
Sbjct: 78  PLIRTGAERAVVSTIVVNDG---RELAIDLEIAAGRANKA-RVNRSPVRSPREVLGILHA 133

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------EG 176
               P    +  G   +RRRFLD ++    PR      D+++++R R  LL         
Sbjct: 134 VLFAPEDLSLVRGDPADRRRFLDDLLIQRRPRMAGVRADYDKVLRQRTALLKTAMAALRQ 193

Query: 177 YFDSS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGF 231
             D S        +  +   G ++  AR+E++  L  L+ +  Q          ++    
Sbjct: 194 RHDQSVLDTLDVWDGHLVAHGAELLSARIELVGELHPLVEKSYQLLAPASRPADIAYRSS 253

Query: 232 LDG-KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           ++G +   S   L +     L   R  +      L+GPHR DL +   D        S G
Sbjct: 254 VEGVEAGLSVEHLADALQAGLVAKRSAEIERGVCLVGPHRDDLELRLGDGPAK-GFASHG 312

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349
           E     + + LA   L+    G  P+L+LD++ A LD  +R +L  +  D   Q+ +T  
Sbjct: 313 ESWSFALALRLAAFDLL-RADGTDPVLMLDDVFAELDGARRRSLATVAADAE-QVLVTAA 370

Query: 350 TDKSVFDSLNETAKFMRISNHQA 372
               V + L+     + +    A
Sbjct: 371 VPDDVPEELSARTVTVEVQEGPA 393


>gi|261493354|ref|ZP_05989880.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496620|ref|ZP_05993000.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307823|gb|EEY09146.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310998|gb|EEY12175.1| DNA recombination protein RecF [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 372

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 147/372 (39%), Gaps = 18/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN     L F       VG NG GKT++LE+I +L  GR F+      +
Sbjct: 12  MALTRLLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIFYLGHGRSFKSHISNRI 71

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F     +++  +    + I+     + +   L+IN      + +L   L +  
Sbjct: 72  IHYDKDDF-VLHGKIDEAKHSWSVGIQKFRSGETT---LKINGEDGNKIADLAHLLPMQV 127

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F   P       +  RL++ RN  L +         
Sbjct: 128 ITPEGLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQRNSAL-QQVRSYQELK 186

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++ +    ++  R E   AL   I +  Q    P I++ L+     +         
Sbjct: 187 AWDIELVKTTYAVSEMRAEYAEALRPEIEKTCQ-FFLPEIEIGLSFHQGWEK-------G 238

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L  G + D     T+IG  ++D         +     S G+ K+++  + LA  
Sbjct: 239 ADYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 297

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD--SLNETA 362
             +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   +   +     + +
Sbjct: 298 EHLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQDQLNQMQWQDRS 357

Query: 363 K--FMRISNHQA 372
                 + N + 
Sbjct: 358 DDCLFTVKNGEI 369


>gi|159045915|ref|YP_001534709.1| recombination protein F [Dinoroseobacter shibae DFL 12]
 gi|157913675|gb|ABV95108.1| DNA replication and repair protein RecF [Dinoroseobacter shibae DFL
           12]
          Length = 361

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 125/361 (34%), Positives = 196/361 (54%), Gaps = 10/361 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++S FR++  L L  D +  +  G NG+GKTN+LEA+SFLSPGRG RRA    V
Sbjct: 4   VAVTSLSLSHFRSHTHLTLSLDERPVVLHGPNGIGKTNVLEALSFLSPGRGLRRAKTEAV 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +   +   A V+      ++   +   D  + R +Q++   +  +  L + + + W
Sbjct: 64  GQSEAGLGWRVSALVKSGGREREV---MTRSDAGASRTVQLDGKPVPQMA-LAELVPMVW 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           LVP+MDR++   +  RR+FLDRM       H R ++ +ER MR RNRLL +G  D  W  
Sbjct: 120 LVPAMDRLWIEAAEGRRKFLDRMTLNFVTTHGRDVLAYERAMRDRNRLLKDGVRDPHWYH 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++EAQMAE G +I   R   ++ +     +      FP   L +    +    ++    K
Sbjct: 180 ALEAQMAEAGARITQNRQRCLSEIE--AAQADATTAFPFAGLQI----EAHDGRAPLRTK 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            E    L   R MD  + RTL GPHR DL   Y  K       STGEQK +L+ + L+ +
Sbjct: 234 GEIENTLRCNRYMDQTAGRTLDGPHRDDLAAVYVSKGTPARDCSTGEQKALLISLILSMS 293

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R + +  G AP++LLDE++AHLD++++ AL+  +  +G+Q +MTGT   +F  L E A+F
Sbjct: 294 RAVKSLVGQAPLVLLDEVAAHLDQERQRALYDEICALGAQAWMTGTGAELFQPLGERAQF 353

Query: 365 M 365
           +
Sbjct: 354 I 354


>gi|163751707|ref|ZP_02158926.1| DNA replication and repair protein RecF [Shewanella benthica KT99]
 gi|161328446|gb|EDP99602.1| DNA replication and repair protein RecF [Shewanella benthica KT99]
          Length = 365

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/373 (24%), Positives = 167/373 (44%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I  FRN AS +L+      +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLTRLHIETFRNIASAQLLPGEGINLIYGLNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  S    + FA +      + I ++     +  V+   I+   ++ +  L + L I  
Sbjct: 61  IQH-SDDKLTLFANLTVQGKESKIGLRRFRSGETEVK---IDGDKVKRLSTLAEFLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  D R     I+ +R+++ RN+LL       +   
Sbjct: 117 ITPESFALLFEGPKSRRQFIDWGAFHCDERFHSAWINVKRILKQRNQLLKNE-ASYAQIQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++      +   R + +N+L+ L+   ++ E  P + + ++              K
Sbjct: 176 YWDRELVRYSEVVTDIRTQYVNSLNELLKGIIE-EFLPQVDVKISFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L      D  S  T  GPH++DL +      +  A  S G+ K+++  + +A  
Sbjct: 228 TDYAQLLETQYPRDVSSGNTASGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSLN-ETA 362
           +L+        I L+D++ + LD   R  L + +TD G+Q+F+T  +  ++ DSLN   +
Sbjct: 287 KLLKQQIDKNSIYLVDDLPSELDAKHRQLLLQQLTDTGAQVFVTAIEPAAILDSLNTPPS 346

Query: 363 KFMRISNHQALCI 375
           K   +   +   I
Sbjct: 347 KVFHVEQGRVTVI 359


>gi|289649102|ref|ZP_06480445.1| recombination protein F [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 367

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 160/374 (42%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L     D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHDTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCSASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|256374164|ref|YP_003097824.1| recombination protein F [Actinosynnema mirum DSM 43827]
 gi|255918467|gb|ACU33978.1| DNA replication and repair protein RecF [Actinosynnema mirum DSM
           43827]
          Length = 371

 Score =  289 bits (741), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 91/378 (24%), Positives = 166/378 (43%), Gaps = 20/378 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR++    L F+    + VG NG GKTN++EA+ +++     R AS A +
Sbjct: 1   MYVRHLQVTDFRSWEHADLAFEPGVNVLVGRNGHGKTNLVEALGYVATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       A V       ++ ++LE    R+ R  ++N   +    ++   LR   
Sbjct: 61  IRSGAQRAVVRTAVVNEG---RELLVELEITPGRANRA-RVNRGPVPRPRDVLGILRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G   ERRRFLD ++    PR+     D+ER++R R  LL         + 
Sbjct: 117 FAPEDLSLVRGDPGERRRFLDELLTLRAPRYAGVRSDYERVLRQRGALLKTVRSVRSAEL 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFD 237
                 +  +A+ G ++  AR++++ A++        +   E+ P + LS    L   F 
Sbjct: 177 GTLDVWDGHLAKHGAELLAARLDLVAAIAPHAAAAYAEVAPESRPAL-LSYRSSLGEAFP 235

Query: 238 --QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
                  L++    +L   R  +      L+GPHR DL +   +      + S GE    
Sbjct: 236 GTHDREVLEDALLAELHRLRPQEIDRGVCLVGPHRDDLELSLGELPAK-GYASHGESWSF 294

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSV 354
            + + L    L+    G  P+L+LD++ A LD  +R  L + V     Q+F+T    + V
Sbjct: 295 ALALRLGAYELLREE-GAEPVLVLDDVFAELDRGRRRQLAK-VAAAAEQVFITAAVAEDV 352

Query: 355 FDSLNETAKFMRISNHQA 372
            + L+  A    + + + 
Sbjct: 353 PEELD--AARFHVGHGEV 368


>gi|227541368|ref|ZP_03971417.1| recombination protein F [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227182919|gb|EEI63891.1| recombination protein F [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 374

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 161/371 (43%), Gaps = 12/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++  L L      T+F G NG GKTNI+E+I +L+     R    A +
Sbjct: 1   MFVRHLTLKDFRSWPELDLELGPGVTVFTGANGFGKTNIVESIYYLANLSSHRVKHDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+         V G     ++ +++  +   +    Q+N   +R   EL   +R   
Sbjct: 61  VRAGADVAQLAATVVSGG---RELVVRMTVKP-HAANLAQLNRTRLRHPRELLGGVRCVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179
             P    + +G    RRR +D ++    PR      ++ER+++ RN LL +   +     
Sbjct: 117 FSPEDLHLVTGEPEGRRRLIDSVISQETPRFSATKAEYERVLKQRNALLKQAKANFYPSM 176

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                  ++Q+A LG ++  AR  +I  L  L+      E  PH +     +L     ++
Sbjct: 177 HGMLDVWDSQLASLGAELVTARSALITRLHPLVEAAY-LEIAPHSRPPAISYLTRDQAET 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               +      L + R  +  + RTLIGPH+ DL + Y  +A      S GE     + +
Sbjct: 236 TADTEALLLTSLAEIRPREIDAGRTLIGPHKDDLGL-YLGEAPAKGFASHGETWSFAIAL 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            +A  RL S T G  PIL+LD++ A LD  +R AL  ++      +  T     +   L 
Sbjct: 295 KIAVFRLFS-TGGHIPILILDDVFAELDNPRRQALTSMIRSAEQVLITTAVPTDIPTDLT 353

Query: 360 ETAKFMRISNH 370
            T   + + + 
Sbjct: 354 HTDHTVLLKDG 364


>gi|288800759|ref|ZP_06406216.1| RecF protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332220|gb|EFC70701.1| RecF protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 369

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 158/375 (42%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  ++N   + L    +   F+G NGVGKTN+L+A+ +LS  R       + V
Sbjct: 1   MILKKITLLNYKNIEDITLDLSPKMNCFIGHNGVGKTNMLDAVYYLSFCRSSSNTVDSQV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  FF             ++      R  +  +  + N    + + +    + + +
Sbjct: 61  MMHD-KDFFVLEGLYTNEANDEELIYCGMKRGSK--KHFKRNKKEYKRLSQHIGFIPLVF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
           + PS   +  G S +RRRFLD ++  +D  +   ++ + + ++ RN LL +    D++  
Sbjct: 118 VSPSDVALIEGPSEDRRRFLDIVISQLDVTYMEALLRYSKALQQRNALLKQENEPDNTLI 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S  E +MAE G  +   R+  +     +  +  Q+ +     +SL      +        
Sbjct: 178 SLFEEEMAEQGTIVYQKRLAFVENFIPVFQQIYQQISGGKETVSLNYISHCQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + +  + +   R  D     +L G HR DL +      +    GS G+ K  ++ + LA 
Sbjct: 230 RGDLLEVIQRDRFKDRAVGYSLHGIHRDDLEMLLGGYQMK-KEGSQGQNKTFVLALKLAQ 288

Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE- 360
              +    +   P+LLLD+I   LD ++   +  +V  D   QIF+T T++   DS+ + 
Sbjct: 289 FDFLKRTASKTTPLLLLDDIFDKLDANRVERIVNLVANDSYGQIFITDTNRDHLDSILKM 348

Query: 361 ---TAKFMRISNHQA 372
                K   + N Q 
Sbjct: 349 GNFDYKLFHVDNGQI 363


>gi|317054735|ref|YP_004103202.1| DNA replication and repair protein RecF [Ruminococcus albus 7]
 gi|315447004|gb|ADU20568.1| DNA replication and repair protein RecF [Ruminococcus albus 7]
          Length = 376

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 81/378 (21%), Positives = 148/378 (39%), Gaps = 15/378 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L+++ F+N  ++ +    +  IF G N  GKTN++EAI   S  R FR      +
Sbjct: 1   MFITDLSVNGFKNLKNIEIKPHEKINIFCGKNAQGKTNLIEAIWLCSGARSFRSTKDRRM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                          +      DI   +  + +   + + +N V ++   +L   L    
Sbjct: 61  I-GDDEQVMEICLSFKNSFREQDIRYAM-AKPNIKEKSVFLNGVKLKAPSKLFGGLNCVI 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    +  G    RRRF D  V  I   +      +E+L+  RN LL     G     
Sbjct: 119 FTPEDLELSKGSPDNRRRFADLSVSQIKNSYSAVTEKYEKLIDQRNTLLKNISYGRGRRE 178

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-------LDG 234
                + Q+A++G  I++ R      L ++  +   + +    +L +  +       L G
Sbjct: 179 ELEMWDIQLAQMGAYISLLRFNYTRKLCAIAKKLYSEISGGSEELDIDYYSTVYDTKLLG 238

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                   L E+Y   L +    D  +  T  G HR DLI       +     S G+ + 
Sbjct: 239 AASVYTGELTEQYLNVLKNNIDDDIRAGFTQKGVHRDDLICRINGSPVR-EDASQGQHRS 297

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           V + + L+ A ++       P++LLD++ + LD  ++  +   + D+  Q+F+T  D ++
Sbjct: 298 VALIMKLSQAYILHEEIDDHPVILLDDVLSELDPSRQKFVISKIHDM--QVFITCCDMNI 355

Query: 355 FDSLNETAKFMRISNHQA 372
                +  K   I   Q 
Sbjct: 356 PFDEKQHGKIFNIEKGQI 373


>gi|71736050|ref|YP_272318.1| recombination protein F [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|97180865|sp|Q48QJ8|RECF_PSE14 RecName: Full=DNA replication and repair protein recF
 gi|71556603|gb|AAZ35814.1| DNA replication and repair protein RecF [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 367

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 161/374 (43%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   + L    +  I  G NG GKT++LEAI  L   R FR +    V
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLPV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L + 
Sbjct: 61  IQYVQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    +
Sbjct: 177 AAWDRELCYASDEIDEFRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKEKELSTV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+           
Sbjct: 288 GHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTET 347

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 348 PVALFHVEQGRITQ 361


>gi|134297885|ref|YP_001111381.1| recombination protein F [Desulfotomaculum reducens MI-1]
 gi|172044201|sp|A4J0F3|RECF_DESRM RecName: Full=DNA replication and repair protein recF
 gi|134050585|gb|ABO48556.1| DNA replication and repair protein RecF [Desulfotomaculum reducens
           MI-1]
          Length = 371

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 150/372 (40%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++K L++  FRNY   + +      I  G N  GKTN+LEAI +   G  FR     DV
Sbjct: 1   MRVKKLSLRNFRNYKEAQFIPHPSINIITGPNAQGKTNLLEAIYYSLRGCSFRAEKDRDV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           T   S         +     L+   IKL+ +     + L +N V  R   EL     +  
Sbjct: 61  TNWESN-----HTVINTEVNLSSRLIKLQWKIQEGSKKLSLNGVE-RPRSEL-DLFGVVL 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG---YFDSS 181
             P    +  G   ERR FLD  V  + P + +    + +++  RN LL E         
Sbjct: 114 FCPEDLSLIKGSPQERRHFLDYEVGTLSPGYSQLWRQYAKILSQRNSLLKEIRDHRSKQE 173

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + Q+   G K+   R++++  L  +  +          +L          +    
Sbjct: 174 VLEVWDEQLYRYGAKVIYLRLQVLKKLIPIARKTHFGLTGGTEELQAKYLSSLVLEPGLS 233

Query: 242 A--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              + + ++      R+M+    +TL+GPHR DL +   +       GS G+Q+ V + +
Sbjct: 234 EGQIYQVFSSSSKKIRQMELKRCQTLLGPHRDDLSLAI-NGVEAKTFGSQGQQRTVTLSL 292

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358
            L+   L  +  G  P+LLLD++   LD  ++N L   + +   Q F+T +     +  +
Sbjct: 293 KLSQLDLWYHEFGEYPVLLLDDVLFELDRSRQNMLIDKILNK-VQTFITTSFTGGIEETI 351

Query: 359 NETAKFMRISNH 370
                  +++  
Sbjct: 352 KGAGLLWQVNAG 363


>gi|197116405|ref|YP_002136832.1| DNA replication/repair protein RecF [Geobacter bemidjiensis Bem]
 gi|226737801|sp|B5E7P8|RECF_GEOBB RecName: Full=DNA replication and repair protein recF
 gi|197085765|gb|ACH37036.1| DNA replication and repair protein RecF [Geobacter bemidjiensis
           Bem]
          Length = 364

 Score =  289 bits (740), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 80/372 (21%), Positives = 164/372 (44%), Gaps = 12/372 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L ++ FRN  ++ L    +  +F G+NG GKTN+LE+I  L+  + F++A  A++
Sbjct: 1   MKLIKLKLASFRNLQNIELAPGKKFNVFYGNNGQGKTNLLESIYLLATMKSFKQARNAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +F   FA V+G      +  ++    ++  +  +++  ++  +D+   +L +  
Sbjct: 61  I-----AFAGEFALVKGTVERDQVRREIAVLIEKQGKKAKVDAKLMTRLDDFFGNLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RRR+LDR VF  D  +     D+ ++++ RN LL     +++   
Sbjct: 116 FTPEEISMVRGGPDLRRRYLDRAVFTCDLGYLTAYHDYAKILKNRNALLK--VNETTGIE 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               Q+ +  + +   R   ++ +  L+  +  + +     + +   L G  ++      
Sbjct: 174 VWTEQLVQAALLVIERRKAYLDRIGKLLQGFYSEISGNDETVQIEYRLHGVDERLLAEDP 233

Query: 245 E-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L      +     T IGPHR DL      ++      S G+Q+  ++ + +A 
Sbjct: 234 AGALNQALRAHAAEERRRGTTAIGPHRDDLYFGLNGRS-ARQFASQGQQRSFVLALKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS--VFDSLNET 361
              I+      P+LLLD++++ LD ++   L   +     Q+F+T T       D L + 
Sbjct: 293 IEHITRCFEAPPVLLLDDMTSELDRERNRNLMEFLKKREMQVFITTTSLHNVDIDELQDN 352

Query: 362 AKFMRISNHQAL 373
            +  RI   + L
Sbjct: 353 -RTFRIKEGKIL 363


>gi|322417548|ref|YP_004196771.1| DNA replication and repair protein RecF [Geobacter sp. M18]
 gi|320123935|gb|ADW11495.1| DNA replication and repair protein RecF [Geobacter sp. M18]
          Length = 364

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 165/371 (44%), Gaps = 10/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L ++ FRN  ++ LV   +  +F G+NG GKTN+LE+I  L+  + F++A   ++
Sbjct: 1   MKLIKLKLASFRNLQNIELVPGKKFNVFYGNNGQGKTNLLESIYLLATMKSFKQAKNVEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              GS      FA ++G+     ++ ++    ++  +  +I+  +   +D+   +L +  
Sbjct: 61  IAFGSE-----FALIKGVVERDRVTREIALLLEKQGKKAKIDAKLATRLDDFFGNLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RRR+LDR VF  D  +     D+ ++++ RN LL  G  + S   
Sbjct: 116 FTPEEISMVRGGPDLRRRYLDRAVFTCDLSYLGAYHDYSKILKSRNALLKLG--EGSGIE 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL- 243
               Q+ +    +   R   +  +  L+  +  + +     + +   L G  ++++    
Sbjct: 174 VWTEQLIQSAQLVIERRKAYLAEIGKLLQGFYSEISGNDETVQIEYRLHGVDEKAYAEDP 233

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
               +  L      +   + T IGPHR DL      ++      S G+Q+  ++ + +A 
Sbjct: 234 AAALSDALKAHAAEEKRRQTTAIGPHRDDLYFGLNGRS-ARHFASQGQQRSFVLALKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETA 362
              I+      P+LLLD++++ LD ++   L   +     Q+F+T T        + E  
Sbjct: 293 IEYITGCFEAPPVLLLDDMTSELDRERNRNLMDFLKKREMQVFITTTSLQNVAIEDMEDN 352

Query: 363 KFMRISNHQAL 373
           +  RI   + L
Sbjct: 353 RTFRIKEGKIL 363


>gi|254360631|ref|ZP_04976780.1| DNA recombination protein RecF [Mannheimia haemolytica PHL213]
 gi|153091171|gb|EDN73176.1| DNA recombination protein RecF [Mannheimia haemolytica PHL213]
          Length = 361

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 78/372 (20%), Positives = 147/372 (39%), Gaps = 18/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN     L F       VG NG GKT++LE+I +L  GR F+      +
Sbjct: 1   MALTRLLINHFRNIQHTDLAFSPHFNFLVGANGSGKTSLLESIFYLGHGRSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F     +++  +    + I+     + +   L+IN      + +L   L +  
Sbjct: 61  IHYDKDDF-VLHGKIDEAKHSWSVGIQKFRSGETT---LKINGEDGNKIADLAHLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F   P       +  RL++ RN  L +         
Sbjct: 117 ITPEGLTLLNGGPSFRRAFLDWGLFHQHPDFYAHWNNLRRLLKQRNSAL-QQVRSYQELK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++ +    ++  R E   AL   I +  Q    P I++ L+     +         
Sbjct: 176 AWDIELVKTTYAVSEMRAEYAEALRPEIEKTCQ-FFLPEIEIGLSFHQGWEK-------G 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA+ L  G + D     T+IG  ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYAEILAQGFERDKALGYTMIGAQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD--SLNETA 362
             +        + L+D+ ++ LD  KR  L   + + GSQ+F+T   +   +     + +
Sbjct: 287 EHLVAQKQRQCLFLIDDFASELDPTKRELLAHRLRESGSQVFVTAITQDQLNQMQWQDRS 346

Query: 363 K--FMRISNHQA 372
                 + N + 
Sbjct: 347 DDCLFTVKNGEI 358


>gi|119773157|ref|YP_925897.1| recombination protein F [Shewanella amazonensis SB2B]
 gi|166221861|sp|A1S1H1|RECF_SHEAM RecName: Full=DNA replication and repair protein recF
 gi|119765657|gb|ABL98227.1| DNA replication and repair protein RecF [Shewanella amazonensis
           SB2B]
          Length = 360

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 164/372 (44%), Gaps = 16/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I  FRN  S +L   A   +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLSRLSIDAFRNIDSAQLAPGAGLNLIYGHNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +    + FA  EG  G + I ++     D  V+   I+   ++ + +L + L I  
Sbjct: 61  IQNDAD-CLTLFAVAEGQAGDSRIGLRRHRSGDTEVK---IDGEKVKRLSQLAEALPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F    +     ++  R+++ RN+LL +G       +
Sbjct: 117 ITPESFSLLFEGPSARRQFIDWGAFHASKQFHLAWMNTRRILKQRNQLLRDGASYEH-IA 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++    +++   R + + +L+ ++   +  E  P + + ++              K
Sbjct: 176 FWDKELIRYALEVTAIRNDYVGSLNGVLKGII-GEFLPDVDIRVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++++ L      D     T+ GPH++DL +   +     A  S G+ K+++  + +A  
Sbjct: 228 TDFSELLQSQYARDLAIGHTVSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA- 362
           +L+        I L+D++ + LD   R  L + + D G+Q+F+T  + S   DSL     
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAKHRQLLLKELIDTGAQLFVTAIEPSAIVDSLPVPPD 346

Query: 363 KFMRISNHQALC 374
           +   +   +   
Sbjct: 347 RMFHVQAGRVTQ 358


>gi|291297542|ref|YP_003508820.1| DNA replication and repair protein RecF [Stackebrandtia nassauensis
           DSM 44728]
 gi|290566762|gb|ADD39727.1| DNA replication and repair protein RecF [Stackebrandtia nassauensis
           DSM 44728]
          Length = 378

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 169/383 (44%), Gaps = 24/383 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR+Y  + +      ++FVG NG GKTN++E++ +L+ G   R  S A +
Sbjct: 1   MHVRRLELTDFRSYGHVDVELPEGPSVFVGPNGHGKTNLIESLGYLATGSSHRVTSDAPL 60

Query: 65  TRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G  S  +  A V EG E LA+++I       ++ R  ++N   +    +L   L+  
Sbjct: 61  VRAGCESATARAAIVHEGRELLAELTIT----PGKANRA-RLNRSPLPRSRDLIGALKAV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174
              P    +  G   +RRR LD ++ A  PR      D++R+++ RN LL          
Sbjct: 116 VFAPEDLNLIRGEPEQRRRLLDELLIARHPRFAGVRADYDRVVKQRNALLRTAYLARKTG 175

Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
             G  D     + +A +A+ G  +   R+ +I   +  +++  +  +    +  L+    
Sbjct: 176 GRGNTDLHTLDTWDAHLAQHGADLLAGRLALIEDYTPYVVKAYEAVSAGRGRPRLSYHSA 235

Query: 234 GKFDQSFCALKE----EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
              ++     ++      +  L   R  +     TL+GPHR DL +   D      + S 
Sbjct: 236 LGENEPLSPDRDLLTARLSAALATARSREVERGTTLVGPHRDDLKLVLGDLPAK-GYASH 294

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE     + + L  A L+ +  G AP+L+LD++ A LD  +R  L  +V     Q+ +T 
Sbjct: 295 GESWSYALALRLGAAELLRD-NGTAPVLILDDVYAELDSQRRERLAELVARAP-QVLVTC 352

Query: 350 TDKSVFDSLNETAKFMRISNHQA 372
                  +     ++  I + + 
Sbjct: 353 AVAEDVPAQMSGGRY-DIHDGEV 374


>gi|183603361|ref|ZP_02711713.2| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC1087-00]
 gi|183569922|gb|EDT90450.1| DNA replication and repair protein RecF [Streptococcus pneumoniae
           CDC1087-00]
          Length = 327

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 141/331 (42%), Gaps = 10/331 (3%)

Query: 43  ILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           +LEAI FL+  R  R  +  ++              + G+      SI LE    +  R 
Sbjct: 1   MLEAIYFLALTRSHRTRTDKNLIHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRV 55

Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
            ++N +    + +   H+ +    P   ++  G    RR+F+D  +  I P +   + ++
Sbjct: 56  TKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNY 115

Query: 163 ERLMRGRNRLLTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             +++ RN  L      D ++ S ++ Q+ + G ++   R++ I  L S   +   + + 
Sbjct: 116 NHILKQRNTYLKSVQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSN 175

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
              +LS++             L E +   L   R  D   + T +GPHR D+        
Sbjct: 176 QIEELSISYQSSVNI-TDKQNLSESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING-- 232

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
           +  + GS G+ + +++ I LA   L+ + T  +PILLLD++ + LD  ++  L   ++  
Sbjct: 233 MDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ- 291

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
             Q F+T T      +L E      I N +A
Sbjct: 292 SIQTFITTTSLDHLQNLPENLSIFTIQNGKA 322


>gi|269793362|ref|YP_003312817.1| DNA replication and repair protein RecF [Sanguibacter keddieii DSM
           10542]
 gi|269095547|gb|ACZ19983.1| DNA replication and repair protein RecF [Sanguibacter keddieii DSM
           10542]
          Length = 414

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 91/418 (21%), Positives = 164/418 (39%), Gaps = 57/418 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+Y  + +  +   T  VG NG GKTN++EA+ +++     R +S A +
Sbjct: 1   MHVSHLSLLDFRSYTQVDVELEPGVTTLVGPNGQGKTNLVEALGYVATLGSHRVSSDAAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+         V G        +++E    R+ R  Q+N   ++   ++    R   
Sbjct: 61  IRAGASRAVVRTRIVRGDRASV---VEIEIAQGRANRA-QLNRSPVQRPRDVLGIARTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
             P    +  G    RRRFLD +   + PR      D+ER++R R+ LL           
Sbjct: 117 FAPEDLVLVKGDPDARRRFLDDLTVLLLPRMAGVFSDYERVLRQRSALLKSAGAARRSSN 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PHIKLSLTGFLD- 233
             D       +A++A++G +I   R++++ AL   +     + +    H +++    LD 
Sbjct: 177 PPDLRTLDVWDAKLAQVGAQIVAVRLQLVAALRPHVAVAYDQVSSGQGHAEIAYRSSLDA 236

Query: 234 -----------------------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
                                  G    S   L+    + L   R  +      L+GPHR
Sbjct: 237 VLSGVDDRSISGLAAEPVPAPDAGAGAPSSEHLEARLLEALAAVRPKELERGVCLVGPHR 296

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN----------------TTGFA 314
            DL +          + S GE     + + LA  RL+++                     
Sbjct: 297 DDLTLTLGGLPAK-GYASHGESWSFALALRLASYRLLTDGPDPSTAEAAFWFADTGPDTE 355

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
           PIL+LD++ A LD  +R  L  +V    SQ+ +T        +  + A+ + +S    
Sbjct: 356 PILVLDDVFAELDSRRRGRLAELVAGA-SQVLITAAVGEDIPAQLDGAR-LAVSGGTV 411


>gi|302205160|gb|ADL09502.1| Recombination protein F [Corynebacterium pseudotuberculosis C231]
 gi|302329718|gb|ADL19912.1| Recombination protein F [Corynebacterium pseudotuberculosis 1002]
 gi|308275401|gb|ADO25300.1| Recombination protein F [Corynebacterium pseudotuberculosis I19]
          Length = 404

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 97/383 (25%), Positives = 161/383 (42%), Gaps = 34/383 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L++ +FR++A   +  +   T+FVG NG GKTNI+EAI +++     R +  + +
Sbjct: 1   MYIRELSLRDFRSWADCHVNLEPGVTVFVGRNGFGKTNIVEAIGYIAHLGSHRVSQDSPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              G  S   S  A  +G E  A + IK      +     QIN   ++    L   +R  
Sbjct: 61  VHQGKDSARVSVTAVNQGRELTAHMLIK-----SKGTNQAQINRTRLKSPRGLLGVVRTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181
              P    +  G   ERRR+LD +V    PR      D++++++ RN LL          
Sbjct: 116 LFSPEDLSLVRGEPGERRRYLDHIVATRKPRLAGVKADYDKVLKQRNSLLKTASASLRRG 175

Query: 182 ---------WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTG 230
                         +AQ+A LG ++  AR  ++  L+ L+     +        +++   
Sbjct: 176 YGADDGTLCTLDVWDAQLARLGSELIHARHSLVEELTPLVHSAYARIAPESRPARINYES 235

Query: 231 FLDGKFD-----------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
            +                     L+     +L   RK +     TL+GPHR DL V   D
Sbjct: 236 TVPVPVAVTDAEEASSSIPDLDVLEASMLSQLGVQRKKEIDRGLTLVGPHRDDLAVLLGD 295

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
                 + S GE   + + + LA   L+S   G  PIL+LD++ A LD  +R  L  I  
Sbjct: 296 YPAK-GYASHGETWSMALALRLAEFHLLS-ADGSEPILILDDVFAELDSKRRQKLVGIAM 353

Query: 340 DIGSQIFMT-GTDKSVFDSLNET 361
           +   Q+ +T      + D+L E+
Sbjct: 354 EAE-QVLITAAVGDDLPDNLAES 375


>gi|218291097|ref|ZP_03495120.1| DNA replication and repair protein RecF [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238982|gb|EED06189.1| DNA replication and repair protein RecF [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 371

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 148/371 (39%), Gaps = 12/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + + +FRNYA   +       + VG+NG GKTN LEA+  ++ G+  R     D+
Sbjct: 1   MDIRRVELIDFRNYAQAEIELSPGVNVLVGENGQGKTNALEAMLLIAVGKSHRAHRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R                 G   ++++L        R    N V +  + E    +++  
Sbjct: 61  IRWEQDRA-RVSLEASTRYGDRRLTLEL----GPEGRRAFANGVQVGRMTEFVGQVQVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--FDSSW 182
             P    +  G    RRRFLD  +  ++P +   +  + R +  RNR L       D   
Sbjct: 116 FAPEDLDLVKGGPRVRRRFLDTELGQMEPLYLHHLSLYNRALLQRNRWLKASPLSPDDDV 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFDQS 239
            ++ + Q+A  G  +   R+  +  L +              + +L   +         +
Sbjct: 176 LATFDGQLAFHGAHVIHRRLRFLARLRAYAARIYSDIASGREEFALAYRSSVSGVAEGMT 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              + +   + L   R  D     T +GPHR D+++    + +  +  S G+Q+ + + +
Sbjct: 236 VEEMADTMQRALERNRAQDLRVGTTSVGPHRDDILLFLDGREVHTS-ASQGQQRTIALSL 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA    +    G  P+LLLD++ + LD+ ++  L   ++    Q  +T T  +      
Sbjct: 295 RLAEIDFMHEELGEYPVLLLDDVLSELDDLRQRNLVLGMSRK-VQTVITTTSLNRLGQEL 353

Query: 360 ETAKFMRISNH 370
           +  +  R+ + 
Sbjct: 354 DDFRLFRVCSG 364


>gi|332139413|ref|YP_004425151.1| Recombinational DNA repair ATPase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549435|gb|AEA96153.1| Recombinational DNA repair ATPase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 362

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 166/371 (44%), Gaps = 15/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + I++FRN  S+ L      TI  G+NG GK++++EA+ +L  GR FR   ++ V
Sbjct: 1   MKLDRVQITQFRNLTSVSLSPSPALTIIKGENGSGKSSLIEALYYLGFGRSFRTNKHSSV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    SF S FA  +  EG  ++ +  + R         IN      + +L   + +  
Sbjct: 61  IQNEKDSF-SVFASCKTEEGD-ELKLGFQ-RSRNETFTCSINGEHSNKLSDLVSLVPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P    +  G   ERRRF D  +F ++ + +     + + ++ RN LL  +    +   
Sbjct: 118 FTPQSTDLIIGSPSERRRFCDWGLFHVEHQFQSLANQYGKFLKHRNALLKQQANLSAPQN 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E+Q +ELG  ++  R E ++ L+ +  +Y Q E  P+  + L+ +   + D      
Sbjct: 178 QYWESQFSELGESLSATRQEYVDTLTPIFKQYAQ-EFLPNFDVELSYYKGWEKDVGLS-- 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L   R+ D     T  GPH++DL +            S G+ ++ +  + ++ 
Sbjct: 235 -----ESLVKKREYDGKIGHTSSGPHKADLRLKVNGVN-AQELLSRGQLRMAVAALQMSQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--T 361
            +L ++ T    I LLD++ A LD DKR      +  + +Q+F+T  + S    + +   
Sbjct: 289 TKLFNSATQRKSIFLLDDVGAELDADKREQFIDGLLKMDTQVFVTAIESSQLAFIQKYNE 348

Query: 362 AKFMRISNHQA 372
            K   + +   
Sbjct: 349 KKMFHVEHGSV 359


>gi|223983626|ref|ZP_03633804.1| hypothetical protein HOLDEFILI_01085 [Holdemania filiformis DSM
           12042]
 gi|223964393|gb|EEF68727.1| hypothetical protein HOLDEFILI_01085 [Holdemania filiformis DSM
           12042]
          Length = 368

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 162/369 (43%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  + +  FRNY S + + D    + +G N  GKTN+LE+I  LS  R  R     D+
Sbjct: 1   MKINQIRLKNFRNYDSCQFIPDPHMNVIIGKNAQGKTNLLESIVLLSTTRSHRAVRDQDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G   F     R+       +  + L        + L I+   +    E    L    
Sbjct: 61  IREGQD-FCKAECRLN-----TEPEMVLSAVIHGKGKTLMIHQKPVSRSSEFIGKLNAVL 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             PS   +F      RRR +D  +  + PR+ + +    +L++ RN LL   + D++   
Sbjct: 115 FAPSDLELFEAPPKVRRRLMDVEIGKVSPRYMQALSAMMKLLKERNSLLKREHLDNAMLE 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            ++ QM E  + I   R + I  ++  +            ++S              A++
Sbjct: 175 VLDQQMIEQQLTIIAMRRQFIAKMNESLSRTYSALAEEEAQVSAAYH-TITEQTEPDAMR 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           EE ++KL + R+ D + + T  G HR DL      + + +++ S G+++++++   L+  
Sbjct: 234 EEISRKLLENRERDRILKTTSSGVHRDDLSFQLNGRDV-LSYASQGQRRMIVLAWKLSLI 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
             I+      P+LLLD++ + LD+ KR  LF +++    Q F+T T+   +   L+   K
Sbjct: 293 DFIAERLNELPVLLLDDVLSELDQQKRVNLFSLIS-PEIQTFITTTEIAELLPFLSRKPK 351

Query: 364 FMRISNHQA 372
              I + Q 
Sbjct: 352 IAEIDSGQI 360


>gi|304382224|ref|ZP_07364731.1| recombination protein F [Prevotella marshii DSM 16973]
 gi|304336581|gb|EFM02810.1| recombination protein F [Prevotella marshii DSM 16973]
          Length = 371

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 152/375 (40%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++I  F+N     L    +   F+GDNG GKTN L+A+ +LS  R       + +
Sbjct: 1   MILSKISIINFKNIREAVLELSPKMNCFIGDNGEGKTNFLDAVYYLSFCRSASNPIDSQI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  FF    R +  EG  ++S+    +     +  + N    + + E    + +  
Sbjct: 61  ICHEQD-FFMLEGRYQTDEGE-EVSVACSMKRGTK-KHFKRNRKEYKRLSEHIGFIPLIQ 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + PS   +  G S ERRR +D ++   D  +   +  + + ++ RN LL  +   D +  
Sbjct: 118 VSPSDITLIEGSSEERRRLMDIVISQYDRTYLETLTRYNKALQQRNTLLKMDDEPDETLL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E +MA+ G  I   R   +  L      + Q+ +    ++SL      +        
Sbjct: 178 DIWETEMADAGELIFRRRDAFVQELMPTFQNFYQRISGDQEQVSLHYISHCQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +      +   R  D     +L G HR DL +      +    GS G+ K  ++ + LA 
Sbjct: 230 RGRLLDVIRRDRAKDRAVGHSLHGIHRDDLEMMLGGYPMKRE-GSQGQNKTFIISLKLAQ 288

Query: 304 ARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361
              +  T  G  P+LLLD+I   LD  +   +  +V  +   QIF+T T++   D +   
Sbjct: 289 FDFLRRTGNGTTPLLLLDDIFDKLDARRVEQIVHLVAGNHFGQIFITDTNRDHLDRILHN 348

Query: 362 A----KFMRISNHQA 372
                K   +++ + 
Sbjct: 349 GDFDYKLFSVAHGEI 363


>gi|284028003|ref|YP_003377934.1| DNA replication and repair protein RecF [Kribbella flavida DSM
           17836]
 gi|283807296|gb|ADB29135.1| DNA replication and repair protein RecF [Kribbella flavida DSM
           17836]
          Length = 379

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 93/384 (24%), Positives = 156/384 (40%), Gaps = 24/384 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FR+Y    +      T FVG NG GKTN++EAI + +     R A+ A +
Sbjct: 1   MYVTALGLLDFRSYQQAEVELTPGVTAFVGPNGHGKTNLVEAIHYTATLGSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+P        V G     D+ I+LE    ++ R  +IN   +    E+   LR   
Sbjct: 61  VRAGAPRAIVRT-EVRGQY-ERDVVIELEINPGKANRA-RINRSPVPRPREVLGLLRTVL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
             P    +  G   ERRRFLD ++    PR      D++R+++ RN LL           
Sbjct: 118 FAPEDLALVKGDPSERRRFLDELLTLRTPRMAGVRQDYDRVLKQRNSLLRSASMARRQNR 177

Query: 183 ----------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                         +A +A  G ++   R+E++ AL  L+               L    
Sbjct: 178 GAAAEGQLRTLEIWDANLARTGAELLATRLELLEALRPLVAGGYDAVARGKGDARLEYKS 237

Query: 233 DGKFDQ---SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
             + +    S   L E     + + R  +     +L+GPHR D+++   D      + S 
Sbjct: 238 SVRLEPGVTSREQLAEVLLATVHEKRADELDRGVSLVGPHRDDVLLGLGDLPAK-GYASH 296

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT- 348
           GE     + + LA   L+    G  P+L+LD++ A LD  +R+ L  +V     Q+ +T 
Sbjct: 297 GESWSFALALRLASYELL-RADGGEPVLILDDVFAELDTQRRDRLAELVAPAE-QVLVTA 354

Query: 349 GTDKSVFDSLNETAKFMRISNHQA 372
                V + L  +     + +   
Sbjct: 355 AVGADVPEEL--SGVRFAVGDGSV 376


>gi|296118606|ref|ZP_06837184.1| RecF protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295968505|gb|EFG81752.1| RecF protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 418

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 100/372 (26%), Positives = 172/372 (46%), Gaps = 30/372 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L++ +FR++  L+L  D    +FVG NG GKTNI+EA+ +++     R    A +
Sbjct: 1   MYIRELDLRDFRSWTELKLDLDPGIVLFVGRNGFGKTNIVEALGYVAHLSSHRVNQDAPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+ S   S  A  +G E  A + IK       +    QIN    +   EL   ++  
Sbjct: 61  VRQGTASARVSATAVNQGRELTAHMLIK-----PHAANQAQINRTRCKSPRELLGVVKTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176
              P    +  G   ERRR+LD ++    PR      D+++++R RN LL         G
Sbjct: 116 LFSPEDLALVRGEPAERRRYLDDIIATRTPRLAGVKADYDKVLRQRNALLKSASAAMRRG 175

Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKENFPHIKLS 227
           Y D+      +     + Q+A LG ++  AR+E+I+ LS       E +  E+ P   ++
Sbjct: 176 YGDTEGASALATLDVWDTQLATLGAQVINARLELIDELSDLIPAAYEGLAPESRP-AHIA 234

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
               +D        A+      +L   R+ +     +L+GPHR DL + +   A      
Sbjct: 235 YKATIDTSDRDVLEAV---MLAELGTKRQREIERGISLVGPHRDDLEL-HLGTAPAKGFA 290

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE     + +  A  +L+ +     PIL+LD++ + LD  +R  L ++  D+  Q+F+
Sbjct: 291 SHGETWSYAIALRFAEFQLLRSEDSD-PILILDDVFSELDAKRREKLVKLAADVE-QVFI 348

Query: 348 T-GTDKSVFDSL 358
           T   D+ + ++L
Sbjct: 349 TAAVDEDLPENL 360


>gi|38232645|ref|NP_938412.1| recombination protein F [Corynebacterium diphtheriae NCTC 13129]
 gi|51316242|sp|Q6NKL5|RECF_CORDI RecName: Full=DNA replication and repair protein recF
 gi|38198903|emb|CAE48514.1| DNA replication and repair protein [Corynebacterium diphtheriae]
          Length = 397

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 166/386 (43%), Gaps = 29/386 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L++ +FR++    +  +   T+FVG NG GKTNI+EAI +++     R    + +
Sbjct: 1   MYIRELSLRDFRSWPECTVTLEPGVTLFVGRNGFGKTNIVEAIGYVAHLGSHRVFHDSAL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G  S   S  A   G E  A + IK      +     QIN   ++   EL   ++  
Sbjct: 61  VRQGKESARVSVTAVNHGRELTAHLLIK-----AKGANQAQINRTRLKSPRELLGVVKTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176
              P    +  G   ERRR+LD ++    PR      D+++++R RN LL         G
Sbjct: 116 LFSPEDLSLVRGDPAERRRYLDHVIATRKPRLGGVKADYDKVLRQRNSLLKTAGAALRRG 175

Query: 177 YFDS----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTG 230
           Y       S     ++Q+A LG ++  AR  ++  L  L+ +   +         +    
Sbjct: 176 YGADDGALSTLDVWDSQLARLGGQLIHARHSVVRELGPLVHDAYARIAPESRPAHIRYVS 235

Query: 231 ---FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
              F D     S    +     +L   R  +     +L+GPHR DL V   D        
Sbjct: 236 TVPFADVVELPSPEEFEAAMLAELGQCRDKEIDRGVSLVGPHRDDLDVVLGDYPAK-GFA 294

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE   + + + LA   L+ N  G  P+L+LD++ A LD  +R  L   VT    Q+ +
Sbjct: 295 SHGETWSMCLSLRLAEFHLLRN-DGTDPVLILDDVFAELDTQRREKLVS-VTAEAEQVLI 352

Query: 348 T-GTDKSVFDSLNETA---KFMRISN 369
           T      + D+L E+A    F+ +++
Sbjct: 353 TAAVGDDLPDTLTESAVHRHFVSVAD 378


>gi|239993752|ref|ZP_04714276.1| Recombinational DNA repair ATPase [Alteromonas macleodii ATCC
           27126]
          Length = 362

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 165/371 (44%), Gaps = 15/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + I++FRN  S+ L      TI  G+NG GK++++EA+ +L  GR FR   ++ V
Sbjct: 1   MKLDRVQITQFRNLTSVSLSPSPALTIIKGENGSGKSSLIEALYYLGFGRSFRTNKHSSV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    SF S FA  +  EG  ++ +  + R         IN      + +L   + +  
Sbjct: 61  IQNEKDSF-SVFASCKTEEGD-ELKLGFQ-RSRNETFTCSINGEHSNKLSDLVSLVPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P    +  G   ERRRF D  +F ++ + +     + + ++ RN LL  +    +   
Sbjct: 118 FTPQSTDLIIGSPSERRRFCDWGLFHVEHQFQSLANQYGKFLKHRNALLKQQANLSAPQN 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E+Q +ELG  ++  R E ++ L+ +  +Y Q E  P+  + L+ +   + D      
Sbjct: 178 QYWESQFSELGESLSATRQEYVDTLTPIFKQYAQ-EFLPNFDVELSYYKGWEKDVGLS-- 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L   R+ D     T  GPH++DL +            S G+ ++ +  + ++ 
Sbjct: 235 -----ESLVKKREYDGKIGHTSSGPHKADLRLKVNGVN-AQELLSRGQLRMAVAALQMSQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--T 361
            +L +  T    I LLD++ A LD DKR      +  + +Q+F+T  + +    + +   
Sbjct: 289 TKLFNKATQRKSIFLLDDVGAELDADKREQFIDGLLKMDTQVFVTAIESTQLAFIQKYNE 348

Query: 362 AKFMRISNHQA 372
            K   + +   
Sbjct: 349 KKMFHVEHGSV 359


>gi|119385560|ref|YP_916615.1| recombination protein F [Paracoccus denitrificans PD1222]
 gi|119376155|gb|ABL70919.1| DNA replication and repair protein RecF [Paracoccus denitrificans
           PD1222]
          Length = 358

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 125/363 (34%), Positives = 198/363 (54%), Gaps = 17/363 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR++A L +  D +     G NG GKTNILEA+S LSPGRG R A+  D 
Sbjct: 1   MTLSLLHLTQFRSWARLEIEADHRPVAIHGPNGAGKTNILEAVSMLSPGRGMRGAAPGDQ 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G    +   A +    G   +   L        R + I++     +  L + +R+ W
Sbjct: 61  ARKGPEVGWQIRAEI----GTHQV---LTRALPGQPREVVIDEKPSTQIA-LGRLMRVIW 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P+MDR+++    +RRRFLDR+  +  P H    + +E+ MR RNRLL +   D+ W  
Sbjct: 113 LTPAMDRLWTDAPEQRRRFLDRVTLSFTPGHAEDALGYEKAMRERNRLLRDEVRDAGWYR 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++EAQMAE G  +   R++ I  +  +  +      FP   L+L        D       
Sbjct: 173 ALEAQMAETGAALTRNRLDAIARI--MAAQEGAGTAFPSASLTLLPGEGSADDPD----A 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E  A +L +GR  D  + RTL GPHR+DL   +  +A+  A  STGEQK +L+ + LA+A
Sbjct: 227 ESIAARLAEGRGRDMAAGRTLTGPHRADLGAHWGPQAMPAALSSTGEQKALLLSLILANA 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R ++     +P+LLLDE++AHLD D+R AL+  +  + +Q ++TGT   +F++L   A+F
Sbjct: 287 RALAE---ESPVLLLDEVAAHLDADRRAALYDEICALRAQAWLTGTGPELFEALRGRAQF 343

Query: 365 MRI 367
           + +
Sbjct: 344 LAV 346


>gi|309791752|ref|ZP_07686242.1| DNA replication and repair protein RecF [Oscillochloris trichoides
           DG6]
 gi|308226245|gb|EFO79983.1| DNA replication and repair protein RecF [Oscillochloris trichoides
           DG6]
          Length = 390

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 96/389 (24%), Positives = 174/389 (44%), Gaps = 27/389 (6%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
              ++ +FRNY  + L      T+F G N  GKT++LEA+ +L+  R  R  S  D+ R 
Sbjct: 2   SQFSLRDFRNYQRIDLQLAPGITLFYGSNASGKTSLLEALFYLATTRSPRSRSDHDLVRW 61

Query: 68  GSPS------FFSTFARVEGMEGLADISIKLETRDDR-------SVRCLQINDVVIRVVD 114
            +        F    A VE   G   + + ++ R D        + + ++++    R +D
Sbjct: 62  DAQGEAGVLPFARVAAEVERRMGRVRLEVLVQRRADEDGQLTNGAQKLVRVDKRPARALD 121

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            L   LR+    P    +  G   ERRR++D  +  +DPR+ R +  ++R+++ RN +L 
Sbjct: 122 -LVGQLRVVLFTPVDLALVDGPPAERRRYIDITLSQLDPRYVRTLAQYQRIVQQRNSMLR 180

Query: 175 EGYFDS-------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                           +  + ++++ G  +   R+  IN L+ ++       +     LS
Sbjct: 181 AWRERRRPLRGIDDELAYWDQELSQAGGFLLAERLRAINELNQIVGPLFGAISGEPHPLS 240

Query: 228 LTGFLDGKFDQSFCA--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           +T     + D +  A  L +  + +L   R+ +    +TLIGPHR D+        +   
Sbjct: 241 ITYRASIELDAALTAPDLSQRLSAELRRLRQDEVARGQTLIGPHRDDMSFSVAGIDLG-R 299

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           +GS G+Q+ V + + L  A L+   +G  P+LLLD++ + LD  +R  L   +     Q 
Sbjct: 300 YGSRGQQRSVTLALKLGEAELMRQRSGETPVLLLDDMLSELDTQRRTHLIAAIRRPAQQT 359

Query: 346 FMTGTDKSVFDS--LNETAKFMRISNHQA 372
            +T TD   F +  L E ++  R+   Q 
Sbjct: 360 VLTATDLGDFGATFLAEISRM-RVEGGQV 387


>gi|85711019|ref|ZP_01042080.1| Recombinational DNA repair ATPase [Idiomarina baltica OS145]
 gi|85695423|gb|EAQ33360.1| Recombinational DNA repair ATPase [Idiomarina baltica OS145]
          Length = 362

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/367 (22%), Positives = 148/367 (40%), Gaps = 14/367 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L    FRN+            +  G NG GKT+++EAI  L  GR FR   Y  +
Sbjct: 1   MRLNALKAINFRNFKRFDFEPSPYANLIGGLNGSGKTSLIEAIYLLGFGRSFRPGGYKQL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F      +   + +  I +    R       L++N   +  + E+ + + +  
Sbjct: 61  INSSESDFTVFCEAMSDRDEVFKIGL---RRTSEGEVQLRLNGETVHKLSEIARFIPVQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RR+F+D  VF ++       + + + ++ RN LL     D    S
Sbjct: 118 FTPESVELILGGPSLRRQFMDWGVFHVEHTFYELWVAYTKSLKQRNFLLR-SKGDVRQDS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
              AQ+A LG +I   R+  I  + + I +       P +KL +   L   +DQS     
Sbjct: 177 FWRAQLARLGEEIIQLRIRYIQEIENFITK-SATFFLPDVKLEV--GLKQGWDQSLS--- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L    + D     T IGPH++D+ +        +   S G+ K+++  + LA A
Sbjct: 231 --LADALDKHTERDRRYGHTSIGPHKADIKLTVDGIDAKLVL-SRGQLKLLVASLKLAQA 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363
              +     + I L+D+I++ LDE  +      +  +  Q F+T  D S    L  +  K
Sbjct: 288 AHYNEKKDSSCIFLVDDITSELDEANQKKFITALEGLKCQSFITAIDSSPVARLFKQNPK 347

Query: 364 FMRISNH 370
              + + 
Sbjct: 348 MFHVEHG 354


>gi|315925614|ref|ZP_07921824.1| recombination protein F [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621155|gb|EFV01126.1| recombination protein F [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 372

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 153/375 (40%), Gaps = 13/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRNYAS +  F     +  G N  GKTN+LEA+ FL+ G   R  + AD+
Sbjct: 1   MIITDLQLKHFRNYASEQFDFSDHINVITGANAQGKTNLLEALFFLARGYSHRATTVADL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +   P+FF+    V        I  ++  R +   + L I+           K +    
Sbjct: 61  LQFEQPAFFARAGIV-----RDGIRHEISARYENRRKVLTIDGKKEPKHAAAGKIVHTIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SS 181
             P   RI      +RRRF++  +    P +   +  + + +  RN LL E        S
Sbjct: 116 FEPDDLRIVKAGPEKRRRFMNEEISGHMPGYLPVLGHYRKALAQRNALLKEIRHAASLKS 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SF 240
             +  +AQ+   G ++   R   +  L+++  +     +     L L+   +        
Sbjct: 176 LLAGWDAQLVHYGARLIRYRQAYLKRLNAVAQQLHTGLSDGREALRLSYRNNVIDQPADQ 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            A+   + ++L    + D     T  GP   D+ V   D      + S G+Q+   + + 
Sbjct: 236 EAIARRFDERLKASVEEDIARGSTATGPQVDDMQVCI-DGREARKYASQGQQRTAAIALK 294

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+   +  + TG  PI+LLD+I + LD  ++  +  I+    +Q F+T TD    +   +
Sbjct: 295 LSQIEIYRHATGDWPIVLLDDILSELDAVRQEKILAILG--RTQAFITCTDSRFAERYPD 352

Query: 361 TAK-FMRISNHQALC 374
             K  + I +   + 
Sbjct: 353 AMKRVLTIQDGHWIS 367


>gi|331693902|ref|YP_004330141.1| DNA replication and repair protein recF [Pseudonocardia
           dioxanivorans CB1190]
 gi|326948591|gb|AEA22288.1| DNA replication and repair protein recF [Pseudonocardia
           dioxanivorans CB1190]
          Length = 380

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 163/374 (43%), Gaps = 14/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR++    L  D   T+ VG NG GKTN++EA+ +++     R A+ A +
Sbjct: 1   MHLRRLAVTDFRSWEQADLDLDPGVTVLVGSNGEGKTNLVEAVGYIATLGSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+         V       +++++LE    ++ R  ++N   +    ++   LR   
Sbjct: 61  IRRGASRAVVRGVVVN---QRRELAVELEITAGKANRA-RVNRSPVPRTRDVLGILRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
             P    +  G   ERRRFLD ++ A  PR+     D+ER++R R+ LL       D   
Sbjct: 117 FAPEDLALVRGDPGERRRFLDDLLVARYPRYAGVRADYERVLRQRSALLKTARAGGDLRT 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSF 240
               +  +A  G ++   R++++  L+            +     L     L+G+     
Sbjct: 177 LDVWDGHLARHGSELLAGRLDLVAGLAPPATAAFADVAPSSDPAALQYRSSLEGELPADA 236

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            AL+E   + L   R+ +      L+GPHR DL +   D      + S GE   + + + 
Sbjct: 237 AALEELLLEALGRVRRQEVDRGVCLVGPHRDDLEIRLGDGPAK-GYASHGESWALALALR 295

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLN 359
           L   RL+       P+L+LD++ A LD  +R AL  +      Q+ +T    + V   L 
Sbjct: 296 LGSYRLL-QADDVEPVLILDDVFAELDTRRRRALAAVALQAE-QVLVTAAVAEDVPAELG 353

Query: 360 ETAKFMRISNHQAL 373
                + +S   A+
Sbjct: 354 --GARITVSGGTAV 365


>gi|323343966|ref|ZP_08084193.1| recombination protein F [Prevotella oralis ATCC 33269]
 gi|323095785|gb|EFZ38359.1| recombination protein F [Prevotella oralis ATCC 33269]
          Length = 372

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 76/375 (20%), Positives = 147/375 (39%), Gaps = 18/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++I  +RN   + L    +    +G NGVGKTN L+A+ +LS  R       + V
Sbjct: 1   MILRKISILNYRNIRDVSLTLSPKINCLIGHNGVGKTNFLDAVYYLSFCRSAFNPIDSQV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F    + V   +   +       R  +  +  + N    + + E    + + +
Sbjct: 61  IMHDEDFFMLQGSYVNDTDEEIEDIYCGMKRGTK--KHFKRNGKEYKRLSEHIGLIPLVF 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P+   +    S ERRR +D ++   D  +   + ++ + ++ RN LL  E   D +  
Sbjct: 119 VSPADASLIDNGSEERRRLMDVVISQYDHSYIDALSNYNKALQQRNVLLRQEAEPDVALM 178

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E +MA  G  +   R   +     +        +    ++ L      +        
Sbjct: 179 EIWEEEMARNGELLYRKRDAFVKEFIPVFQRIYSSISGDKEQVELGYRSHCQ-------- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +    + +   R  D     +L G HR DL +   D  +    GS G+ K  ++ + LA 
Sbjct: 231 RGSLLEVIRHDRSKDRAVGYSLHGVHRDDLEM-LLDGYLMKREGSQGQTKTFVLALKLAQ 289

Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361
              +    +   P+LLLD+I   LD  +   +  +V+ D   QIF+T T++   D + + 
Sbjct: 290 FDFLKRTASNTTPLLLLDDIFDKLDAARVEQIVHLVSGDSYGQIFITDTNRDHLDRILQN 349

Query: 362 ----AKFMRISNHQA 372
                K   ++N   
Sbjct: 350 NRHAYKLFSVTNGDI 364


>gi|113968349|ref|YP_732142.1| recombination protein F [Shewanella sp. MR-4]
 gi|123325558|sp|Q0HPD2|RECF_SHESM RecName: Full=DNA replication and repair protein recF
 gi|113883033|gb|ABI37085.1| DNA replication and repair protein RecF [Shewanella sp. MR-4]
          Length = 360

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 159/373 (42%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI  FRN    +L   +   +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLIRLNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                    + FA +    G + I ++     +  V+   I+   ++ +  L + L I  
Sbjct: 61  IN-NEQDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  DP+     ++  R+++ RN+LL           
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRN-NSSYDQIQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +      ++   R   +++L+ L+   +  E  P + + ++              K
Sbjct: 176 YWDREFVRYTEQVTEIRNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++A+ L      D  +  T+ GPH++DL +         A  S G+ K+++  + +A  
Sbjct: 228 TDFAQLLESQYPRDLATGHTVSGPHKADLRLRVGSLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362
           +L+        I L+D++ + LD   R  L + + D G+Q+F+T  + +   DSL+   +
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHTPPS 346

Query: 363 KFMRISNHQALCI 375
           +   +   +   I
Sbjct: 347 RMFHVEQGRVTVI 359


>gi|114045516|ref|YP_736066.1| recombination protein F [Shewanella sp. MR-7]
 gi|123131882|sp|Q0I0U6|RECF_SHESR RecName: Full=DNA replication and repair protein recF
 gi|113886958|gb|ABI41009.1| DNA replication and repair protein RecF [Shewanella sp. MR-7]
          Length = 360

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 159/373 (42%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI  FRN    +L   +   +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLIRLNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                    + FA +    G + I ++     +  V+   I+   ++ +  L + L I  
Sbjct: 61  IN-NEQDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  DP+     ++  R+++ RN+LL           
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRN-NSSYEQIQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +      ++   R   +++L+ L+   +  E  P + + ++              K
Sbjct: 176 YWDREFVRYTEQVTEIRNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++A+ L      D  +  T+ GPH++DL +         A  S G+ K+++  + +A  
Sbjct: 228 TDFAQLLESQYPRDLATGHTVSGPHKADLRLRVGSLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362
           +L+        I L+D++ + LD   R  L + + D G+Q+F+T  + +   DSL+   +
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHTPPS 346

Query: 363 KFMRISNHQALCI 375
           +   +   +   I
Sbjct: 347 RMFHVEQGRVTVI 359


>gi|282896236|ref|ZP_06304259.1| RecF protein [Raphidiopsis brookii D9]
 gi|281198925|gb|EFA73803.1| RecF protein [Raphidiopsis brookii D9]
          Length = 371

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 160/375 (42%), Gaps = 13/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRNY   ++ F A  TI VG+N  GK+N+LE++  L+  R  R    +D 
Sbjct: 1   MYLQSLELRNFRNYQEQKVEFTAPKTILVGNNAQGKSNLLESVELLATLRSHRLGKDSDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G        A ++   G++++++ L      S R + IN   +R   +    L    
Sbjct: 61  IQEGQDMA-RINAILDRTTGISNLTLNLRRN---SRRTVAINGETVRRQMDFLGILNAVE 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179
                  +  G    RR +LD ++  ++P +   +  + +++R RN  L           
Sbjct: 117 FSSLDLELVRGSPAIRRSWLDTLLVQLEPVYAHILHQYNQVLRQRNAFLKTIQQKGIKNH 176

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-Q 238
            S  +  +AQ+   G K+   R   I  L  +   +    +    KL +    +      
Sbjct: 177 DSELAIWDAQLVTTGTKVMRRRNRAIQRLGPIATHWHSSISGKMEKLEINYMPNVPILID 236

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               L + +  ++ +   ++S    TL+GPHR ++ +          + S G+Q+ +++ 
Sbjct: 237 EQQELLQFFLDRVQEHSAIESYRGTTLVGPHRDEIELVVNGTP-ARQYASQGQQRTLVLA 295

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357
           + LA  +LI       P+LLLD++ A LD  ++N L   + D   Q  +T T    FD+ 
Sbjct: 296 LKLAELQLIEEVVNDTPLLLLDDVLAELDLSRQNQLLDAIQD-RFQTLITTTHLGAFDAQ 354

Query: 358 LNETAKFMRISNHQA 372
              +++ + +     
Sbjct: 355 WLNSSQILFVKCGSI 369


>gi|119475238|ref|ZP_01615591.1| recombination protein F [marine gamma proteobacterium HTCC2143]
 gi|119451441|gb|EAW32674.1| recombination protein F [marine gamma proteobacterium HTCC2143]
          Length = 366

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 158/370 (42%), Gaps = 15/370 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L I+  RN  S+ L   +   I  GDNG GKT++LEAI  LS  + FR      +  
Sbjct: 4   IRRLEIAGVRNLTSVSLPLLSTINILYGDNGAGKTSVLEAIHLLSSAKSFRGHKLKPLIN 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRISWL 125
               S    F  ++ + G     + +E     SV   +++    +R    L ++L +  +
Sbjct: 64  SDMDSC-VCFGEID-LPGQGFQPVGVERFKASSVPAVIKVAGQTVRSASALAENLPLQVI 121

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
                ++  G    RR+F+D  VF ++ +      + +R ++ RN LL  G  D S  + 
Sbjct: 122 CSDTFKLLEGSPAVRRQFMDWGVFHVEHQFHSIWKNAQRCLKQRNSLLRHGRLDDSELAV 181

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
              ++   G ++++ R    + L  +  E + +       LSL  +     D+S C +  
Sbjct: 182 WTQELVGFGEQLDVFRKSYFDRLVPIFEETLSRL-LDIDGLSLKYYRGWDSDRSLCDV-- 238

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
                L      D     T  GPHR+DL   Y          S G+QK+V+  + +A   
Sbjct: 239 -----LAANLNRDKEVTHTQAGPHRADLKFRYRSANAADIL-SRGQQKLVVCALRVAQGY 292

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD---SLNETA 362
           L+S   G + + L+D++ + LD   R AL  ++ ++G Q+F+T  D        S++   
Sbjct: 293 LLSQEKGRSCVYLIDDLPSELDRGHRKALCMLLEELGCQVFVTCVDHRDLAECWSVDMPV 352

Query: 363 KFMRISNHQA 372
               + +   
Sbjct: 353 SMFHVEHGNI 362


>gi|271961614|ref|YP_003335810.1| recombinational DNA repair ATPase (RecF pathway)-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270504789|gb|ACZ83067.1| Recombinational DNA repair ATPase (RecF pathway)- like protein
           [Streptosporangium roseum DSM 43021]
          Length = 390

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 91/394 (23%), Positives = 154/394 (39%), Gaps = 34/394 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y ++ L  +   T FVG NG GKTN++EA+ +++     R A+   +
Sbjct: 1   MHVANLSLTDFRSYDTVDLGLEPGVTAFVGPNGQGKTNLVEALGYVATQSSHRVATDGPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+         V          I+LE    ++ R  ++N   +    ++   LR   
Sbjct: 61  VRQGAARAIVRSVVVREDRRAL---IELEINPGKANRA-RLNRSPVSRPRDVIGLLRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G   ERRR+LD ++ A  PR      D++R+++ R  LL           
Sbjct: 117 FAPEDLSMVKGDPSERRRYLDDLLVARTPRFAGVRADYDRVLKQRGALLRTAAQARRGGR 176

Query: 181 --------------------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE- 219
                               S     +A +A  G ++  AR+E++ AL  L+        
Sbjct: 177 SGRRADNDAAFAAAGAGDPLSTLEVWDAHLARHGAELLAARLELVEALRPLVAASYAALA 236

Query: 220 -NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
            N     L   G L  +       L+E     L + R  +     TL+GPHR DL +   
Sbjct: 237 PNSAPAALEYRGTLSTEEGSDRATLEERLRAGLLEVRTSEIERGVTLVGPHRDDLFLGLG 296

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           +      + S GE     + + LA   L+    G  P+L+LD++ A LD  +R  L  IV
Sbjct: 297 ELP-ARGYASHGESWSFALALRLAAYDLL-RADGGDPVLILDDVFAELDNQRRGRLAGIV 354

Query: 339 TDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
                 +        V   L        ++    
Sbjct: 355 APAEQVLITAAVAADVPAEL--VGARFDVTEGSV 386


>gi|163757040|ref|ZP_02164146.1| putative DNA replication and repair protein [Kordia algicida OT-1]
 gi|161323044|gb|EDP94387.1| putative DNA replication and repair protein [Kordia algicida OT-1]
          Length = 376

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 163/372 (43%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N+ +    F+ +    VG+NGVGKTN+L+AI  LS G+ +     +  
Sbjct: 18  MFLKKLSLINYKNFETNSFDFNQKINCLVGNNGVGKTNVLDAIYHLSFGKSYFNPVASQN 77

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G   FF      E  +   +I   L+    + V+    N      + E    L +  
Sbjct: 78  IRHGED-FFVIDGLYEKADRDENIICSLKKGQKKMVKR---NGKPYDKLSEHIGFLPLVI 133

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   +    S  RR+F+D ++   + ++   +I++ +++  RN LL        FD 
Sbjct: 134 ISPADRDLIIEGSDTRRKFMDSVISQSNKKYLHNLINYNKVLSQRNSLLKYFALNSTFDG 193

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              S    Q+ E G +I   R   ++A   + M      +     ++++           
Sbjct: 194 DTLSIYNDQLHEFGSQIYAERSAFLDAFLPIFMTRYNAISNEKEIVNISYK--------S 245

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              ++++   L +    D + + T +G H+ DL+       I    GS G+QK  L+ + 
Sbjct: 246 QLHEKDFRSLLEESLAKDKVLQYTSVGTHKDDLLFTIETYPIK-KFGSQGQQKSFLIALK 304

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVF 355
           LA    I       PILLLD+I   LDED+   +  +V +    QIF++ T     +S+ 
Sbjct: 305 LAQFDFIKQLANVTPILLLDDIFDKLDEDRVAQIMALVNNEDFGQIFISDTHVERTESIV 364

Query: 356 DSLNETAKFMRI 367
             ++++ +  ++
Sbjct: 365 KEIHQSYEIFKL 376


>gi|127510938|ref|YP_001092135.1| DNA replication and repair protein RecF [Shewanella loihica PV-4]
 gi|166221864|sp|A3Q8S8|RECF_SHELP RecName: Full=DNA replication and repair protein recF
 gi|126636233|gb|ABO21876.1| DNA replication and repair protein RecF [Shewanella loihica PV-4]
          Length = 360

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 155/373 (41%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I  FRN AS +L       +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLSRLHIDSFRNIASAQLQLGDGLNLIYGQNGSGKTSILEAIFFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +       + FA++E  E    I ++     +  V+    N   ++ +  L + L I  
Sbjct: 61  IQNDQDK-LTLFAQLEQGEQETKIGLRRYRSGETEVKM---NGEKVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  D        +  R+++ RN++L           
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHTDKSFYTAWANVRRILKHRNQMLKSETP-YQQIQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++      +   R   + +L+  +   ++ E  P + + ++              K
Sbjct: 176 FWDKELVRYAEIVTEIRKRYVGSLNERLKGIIE-EFLPQVDVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y   L      D  +  T  GPH++DL +      +  A  S G+ K+++  + +A  
Sbjct: 228 TDYQTLLQAQYPRDLAAGHTASGPHKADLRLRVGTLPVQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA- 362
           +L+        I L+D++ + LD   R  L + ++D G+Q+F+T  + +   DSLN    
Sbjct: 287 KLLKQQIDKNSIYLVDDLPSELDARHRQLLLQQLSDTGAQVFVTAIEPAAIMDSLNTPPV 346

Query: 363 KFMRISNHQALCI 375
           K   +   +   I
Sbjct: 347 KVFHVEQGRVTVI 359


>gi|70733516|ref|YP_257155.1| recombination protein F [Pseudomonas fluorescens Pf-5]
 gi|97180867|sp|Q4KKS8|RECF_PSEF5 RecName: Full=DNA replication and repair protein recF
 gi|68347815|gb|AAY95421.1| DNA replication and repair protein RecF [Pseudomonas fluorescens
           Pf-5]
          Length = 367

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 89/373 (23%), Positives = 159/373 (42%), Gaps = 15/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   +      +  +  G NG GKT++LEAI  L   R FR A    V
Sbjct: 1   MSLSRVSVTAVRNLHPVTFSPSPRINLLYGANGSGKTSVLEAIHLLGLARSFRSARLLPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    +  + F +VE  +G    S+ +  RD +    ++I+    R   +L + L +  
Sbjct: 61  IQYEQLAC-TVFGQVELAQGGHS-SLGIS-RDRQGEFQIRIDGQNARSAAQLAEILPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D++  +
Sbjct: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMSTWQRLQKALRQRNSWLRHGTLDAASQA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++ +   +I+  R   I AL  +  E    E      L+L+ +     D+      
Sbjct: 178 AWDRELCQASAEIDEYRRAYIKALKPVF-ERTLGELLQLEGLTLSYYRGWDKDR------ 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            E ++ L      D     T  GP R+DL +            S G+QK+V+  + +A  
Sbjct: 231 -ELSEVLATALHRDQQMGHTQAGPQRADLRLRLGGHNAADIL-SRGQQKLVVCALRIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNET 361
            L+S       I L+D++ + LDE  R AL R++ D+  Q+F+T  D  +          
Sbjct: 289 HLVSQARRGQCIYLVDDLPSELDEQHRRALCRLLEDLRCQVFITCVDHELLREGWQTETP 348

Query: 362 AKFMRISNHQALC 374
                +   +   
Sbjct: 349 VALFHVEQGRITQ 361


>gi|160914816|ref|ZP_02077030.1| hypothetical protein EUBDOL_00823 [Eubacterium dolichum DSM 3991]
 gi|158433356|gb|EDP11645.1| hypothetical protein EUBDOL_00823 [Eubacterium dolichum DSM 3991]
          Length = 366

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 162/368 (44%), Gaps = 9/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + ++RNY  L++       I  G N  GKTN+LEAI +LS  R  R A   D+
Sbjct: 1   MRLTKLRLHDYRNYEDLQITLKNGIHILSGKNAQGKTNVLEAILYLSTTRSHRTACDEDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +FF   A +E      ++ I +  R     + L +    +  V +         
Sbjct: 61  IKEGKEAFF-IKAEIEKTNRKEELQISVNERG----KNLFMYKNPVSKVSDFIGEFNAVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +F+     RRRF+D  +  +   +   +   ++L++ RNR L + + +  +  
Sbjct: 116 FCPDDMMLFNASPRVRRRFVDMELSKLSKTYVNTLFVAQKLLKERNRYLKQEHVNKEYLD 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +  Q+ E  + +   R   +  L +   ++ ++ +    ++ +       + +    L+
Sbjct: 176 VVTMQLIEATMVVMKQRHHFLKQLLTKCAQFYKRLSNDGTQIEVIYESCVPYTEDEQLLR 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +   +K    R+ D   R T +G H+ D I     + +   + S G+++ +L+ + +   
Sbjct: 236 DRLTEKYEKSRERDLAMRVTSVGIHKEDFIFQINGREV-ATYASQGQKRSILLALKVGMI 294

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN--ETA 362
            +I +     P+LLLD++ + LD D+R  L   + +   QIF++ TD   F  L+  +  
Sbjct: 295 YMIEDIIHDYPVLLLDDVFSELDMDRRKELLHSLPN-EVQIFISTTDIEEFKHLDIHQPI 353

Query: 363 KFMRISNH 370
               I++ 
Sbjct: 354 TIWSIASG 361


>gi|117918470|ref|YP_867662.1| recombination protein F [Shewanella sp. ANA-3]
 gi|166221866|sp|A0KR37|RECF_SHESA RecName: Full=DNA replication and repair protein recF
 gi|117610802|gb|ABK46256.1| DNA replication and repair protein RecF [Shewanella sp. ANA-3]
          Length = 360

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/373 (22%), Positives = 159/373 (42%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI  FRN    +L   +   +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLIRLNIDSFRNIQLAQLSPSSGINLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                    + FA +    G + I ++     +  V+   I+   ++ +  L + L I  
Sbjct: 61  IN-NEQDKLTLFATLNLPRGDSKIGLRRFRSGETEVK---IDGEKVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  DP+     ++  R+++ RN+LL           
Sbjct: 117 ITPESFSLLFEGPKSRRQFIDWGAFHSDPQFYAAWVNVRRVLKQRNQLLRN-NSSYDQIQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +      ++   R   +++L+ L+   +  E  P + + ++              K
Sbjct: 176 YWDREFVRYTEQVTEIRNRYVDSLNELLKGII-GEFLPQVDVKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++A+ L      D  +  T+ GPH++DL +         A  S G+ K+++  + +A  
Sbjct: 228 TDFAQLLESQYPRDLATGHTVSGPHKADLRLRVGSLPAQDAM-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN-ETA 362
           +L+        I L+D++ + LD   R  L + + D G+Q+F+T  + +   DSL+   +
Sbjct: 287 KLLKQQIDKHSIYLVDDLPSELDAQHRQLLLKQLVDTGAQVFVTAIEPAAIVDSLHMPPS 346

Query: 363 KFMRISNHQALCI 375
           +   +   +   I
Sbjct: 347 RMFHVEQGRVTVI 359


>gi|326383912|ref|ZP_08205596.1| recombination protein F [Gordonia neofelifaecis NRRL B-59395]
 gi|326197371|gb|EGD54561.1| recombination protein F [Gordonia neofelifaecis NRRL B-59395]
          Length = 405

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 98/385 (25%), Positives = 169/385 (43%), Gaps = 33/385 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++   R       T+FVG NG GKTN+LE++ +++  R  R +S A +
Sbjct: 1   MFVRELTLRDFRSWPQARFTLSPGTTVFVGRNGFGKTNLLESLFYVATLRSHRVSSDAPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+ +   +     EG E   +++I       +      IN   +R   E+   LR  
Sbjct: 61  VRTGADAARVTATVENEGRELTVELTI-----PAQGANKATINTRPVRRTREVLGILRAV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174
              P    +  G   ERRRF+D +V  + P      +D++R++R R+ LL          
Sbjct: 116 LFAPEDLALVRGDPGERRRFIDELVAQLRPLAAGAKVDYDRVLRQRSALLKTASAAMRRG 175

Query: 175 --EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH---IKLSLT 229
             +     S     +AQ+AELG ++  +R+ ++  L+  + +       PH     +S  
Sbjct: 176 GEQAESVLSTLDVWDAQLAELGAQVTASRLAVVRQLAPFVTDAYSSI-APHSRPAHISYR 234

Query: 230 GFLDGKFDQS------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
                  D S        A+++  A++L + R  +      L+GPHR DL +   D+   
Sbjct: 235 SAAGESVDASPGGDAEIDAIRDVLAQRLVELRSKEIDRGLCLVGPHRDDLFLGLGDEPAK 294

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
               S GE     + + L    L+    G  PI++LD++ A LD  +R  L    T    
Sbjct: 295 -GFASHGESWSFALSLRLGSVELL-RADGVEPIIMLDDVFAELDVTRRRLLAEF-TASAD 351

Query: 344 QIFMTGTDKSVFDSLNETAKFMRIS 368
           Q+ +T    +V D + E+    RIS
Sbjct: 352 QLLITA---AVPDDIPESIVGRRIS 373


>gi|150006868|ref|YP_001301611.1| putative DNA replication and repair protein [Parabacteroides
           distasonis ATCC 8503]
 gi|262384383|ref|ZP_06077518.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_33B]
 gi|298377294|ref|ZP_06987247.1| RecF protein [Bacteroides sp. 3_1_19]
 gi|301308691|ref|ZP_07214643.1| RecF protein [Bacteroides sp. 20_3]
 gi|166220722|sp|A6L8H5|RECF_PARD8 RecName: Full=DNA replication and repair protein recF
 gi|149935292|gb|ABR41989.1| putative DNA replication and repair protein [Parabacteroides
           distasonis ATCC 8503]
 gi|262294086|gb|EEY82019.1| DNA replication and repair protein recF [Bacteroides sp. 2_1_33B]
 gi|298265708|gb|EFI07368.1| RecF protein [Bacteroides sp. 3_1_19]
 gi|300833215|gb|EFK63833.1| RecF protein [Bacteroides sp. 20_3]
          Length = 365

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 157/375 (41%), Gaps = 22/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N     ++F  +   F G+NG+GKTN+L+AI +LS  +       + +
Sbjct: 1   MILKKLSVLNYKNILQSEVIFSPKMNCFFGNNGMGKTNLLDAIHYLSFCKSHVNTPDSQI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                          +      +I   +  R  +     + N      + E    L +  
Sbjct: 61  INSDQD-LCVVQGNYDYEGREEEIFCAMRRRQRK---QFKRNKKEYDKLSEHIGLLPLVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P+   +  G S ERRRFLD ++   D  +   +I + + +  RN LL +   D+S   
Sbjct: 117 VSPADADLIRGGSDERRRFLDLIISQQDKPYLHALIQYNKALLQRNTLLKDQSMDASLYE 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCA 242
            +E Q+   G  +   R +++   + +  EY Q    +   + L     L+         
Sbjct: 177 VLEMQLGMYGQIVYEKRKKLVEDFTPIFNEYYQTICGSAEEVGLHYISQLE--------- 227

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            + E A KL   R+ D +   T  G H+ +L +      I    GS G+ K  L+ + LA
Sbjct: 228 -ETELAGKLAMSRERDRILGYTSSGIHKDELEMTLGGYLIRRV-GSQGQNKTYLIALKLA 285

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL--- 358
               ++      PILLLD+I   LD  +   + ++V++ G  QIF+T T++   D +   
Sbjct: 286 QFAFLNKRGQTTPILLLDDIFDKLDASRVEQIIKLVSENGFGQIFITDTNRKYLDEILLA 345

Query: 359 -NETAKFMRISNHQA 372
            N      R+   + 
Sbjct: 346 MNHDYALFRVERGEV 360


>gi|56459115|ref|YP_154396.1| recombinational DNA repair ATPase [Idiomarina loihiensis L2TR]
 gi|81678377|sp|Q5QY37|RECF_IDILO RecName: Full=DNA replication and repair protein recF
 gi|56178125|gb|AAV80847.1| Recombinational DNA repair ATPase [Idiomarina loihiensis L2TR]
          Length = 354

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/367 (23%), Positives = 162/367 (44%), Gaps = 18/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ LN+S FRN++ + L    +  I  GDNG GKT++LEAI  L  GR FR   +  +
Sbjct: 1   MFIETLNLSHFRNFSEVALSPSPKINIITGDNGSGKTSLLEAIYLLGFGRSFRPGGFRQL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  S F+ F R        D +I +    D   + L++N   ++ + ++ + + +  
Sbjct: 61  IKEG-NSGFTVFCR------SQDYAIGVRRSTD-GEQSLRLNGANVQRMSDVARLVPVQL 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P    I      +RR+F+D  VF ++       + + +L++ RN LL +         
Sbjct: 113 LTPESVDILLEGPGQRRQFIDWGVFHVEHSFYSDWVAYTQLLKQRNSLLKQRSLPVREDR 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+A  G +I+ +R + +  L+  I E + K     + + +         QS     
Sbjct: 173 YWKEQLAYYGERISKSREKYLEELNDYIQE-LAKSFLSDVTMEVRLKSGWDTSQS----- 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L    + D     T +G H++D+ V   D        S G+ K  +  + LA  
Sbjct: 227 --LFDALESHTEKDKKYGFTSVGAHKADIKV-IADGVEVKHRLSRGQLKTAITALKLAQG 283

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           +          I L+D++++ LD   +  L R + ++ +Q+F+T  T K + D   ++ +
Sbjct: 284 KHYQKIKRQPCIYLVDDLTSELDSKNQALLCRELENLDAQVFITAITGKQLSDKFQKSPR 343

Query: 364 FMRISNH 370
              + + 
Sbjct: 344 MFHVEHG 350


>gi|293369424|ref|ZP_06616009.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CMC
           3f]
 gi|292635591|gb|EFF54098.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CMC
           3f]
          Length = 375

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 150/375 (40%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 4   MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 63

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   +I   ++ R  +  +    N        +    L + 
Sbjct: 64  IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 119

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL      +   
Sbjct: 120 MVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFPVEEEL 179

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I     +   +    +     + L+     +       
Sbjct: 180 FLVWEEMMAQAGAIVFQKREAFIREFIPIFQSFYSFISQDKEVVGLSYESHARD------ 233

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L   R+ D +   +L G H+ +L +   +  I    GS G+ K  LV + LA
Sbjct: 234 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 291 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRGHLDRILHK 350

Query: 359 -NETAKFMRISNHQA 372
                K  R+     
Sbjct: 351 VGSDYKIFRVEEGTI 365


>gi|15603024|ref|NP_246096.1| recombination protein F [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13959473|sp|Q9CLQ6|RECF_PASMU RecName: Full=DNA replication and repair protein recF
 gi|12721507|gb|AAK03243.1| RecF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 358

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 155/367 (42%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I  FRN  ++ L FD      VG+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLIENFRNLTAVDLEFDHGFNFLVGNNGSGKTSLLEAIFYLGHGRSFKSAVSNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P F    A+++       + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYEQPHFI-LHAKIQEQAHQWSVGLQ---KLRQGNSVVKINGEDGNKIADLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G  + RR FLD  +F          ++  RL++ RN  L +     +   
Sbjct: 117 ITPEGLTLLNGGPVYRRAFLDWGLFHHHNHFHLAWVNLNRLLKQRNAALQQATHYQA-LE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++ +L  +++  R +   AL   I E   +   P +++S++     + D       
Sbjct: 176 IWDRELVKLAHQVSEWRAQYAEALRPEI-EQTCRLFLPELEISVSFHQGWEKDS------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L    + D     T+ GP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -DYADLLVRHFERDRAIGYTVSGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
             +        I L+D+ ++ LD+ KR  L   +   GSQ+F++  T+  +     +  +
Sbjct: 287 EHLMKQKERHCIFLIDDFASELDQYKRALLAERLKQSGSQVFVSAITETQLKQMQPQQHR 346

Query: 364 FMRISNH 370
             R+   
Sbjct: 347 TFRVEEG 353


>gi|313887660|ref|ZP_07821342.1| DNA replication and repair protein RecF [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846269|gb|EFR33648.1| DNA replication and repair protein RecF [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 357

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 102/369 (27%), Positives = 166/369 (44%), Gaps = 12/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  FRNY  L  V      +  G N  GKTN+LE+I        FR     D+
Sbjct: 1   MKLKHLRLFNFRNYKGLDFVPGENINVLYGLNASGKTNLLESIYMSIRATSFRSLKDFDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             I   S  S   R    +   D  I++   +++    L IND  +    E  K   +  
Sbjct: 61  INIDENS-SSIITRYMTEDYKDDYRIEISKFENKK---LFINDDKVNT-KEYRKSRFVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    I      ERR+FLD ++  ID  +   M  + RL+  RN+LL     D +   
Sbjct: 116 FNPEDLNIIKYSPKERRKFLDDLLSNIDLNYDFYMYKYRRLLFERNKLLK-INMDRNLLD 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++   G KI I R++ I  L+ +  ++ +  +   + ++    +    D+    L 
Sbjct: 175 VYDREIVRNGTKIIIMRLKTIKKLNEIAKKHYKNLSGDDLNITYLSTVPVFVDEE--ELM 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E Y + L +    D   R T IGPHR DL     +K  + ++GS GEQ+ +++ + LA A
Sbjct: 233 ENYLRILKESLPKDLEKRYTTIGPHRDDLDFKI-NKFSSKSYGSQGEQRSIVLSLKLAEA 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            LI +     P+LLLD++ + +D  +   L   + D+  Q F+T T+   F   +  A F
Sbjct: 292 DLIRDLYKTKPLLLLDDVFSEIDSKRSRYLLHSLKDL--QTFITTTEADEFLK-SVDANF 348

Query: 365 MRISNHQAL 373
            R+S  + L
Sbjct: 349 YRVSQGRIL 357


>gi|300777028|ref|ZP_07086886.1| recombination protein F [Chryseobacterium gleum ATCC 35910]
 gi|300502538|gb|EFK33678.1| recombination protein F [Chryseobacterium gleum ATCC 35910]
          Length = 359

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 94/372 (25%), Positives = 167/372 (44%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L++  F+N+   +  F  Q   FVG+NGVGKTNIL+A+ +LS G+ F   +  + 
Sbjct: 1   MIIKKLSLYNFKNHTEKKFEFSPQINCFVGNNGVGKTNILDALHYLSVGKSFLGNTDLNN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     FF+  A ++  +    I I   T+   + + ++ ND     + +   +L    
Sbjct: 61  IKK-EEDFFTIDAEIQNEDSEDIIRI---TQPKEAKKVIKKNDKSYDRLADHIGYLPSVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180
           + P    + S     RR+FLD M+   D  +   +I +++ ++ RN LL        +D 
Sbjct: 117 ISPYDSNLISDSGESRRKFLDSMISQTDSGYLFDLIQYQKTIQQRNALLKYFAKNRTWDK 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 +  +   G KI   R E +  L+ ++  + +  +     +S+            
Sbjct: 177 DSLEIYDDPIIRFGTKIFNKRKEFVEQLNPIVQNFYKIISGGKETVSVIY--------ES 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L++ +   L +  + D M   T  G H+ DL+ +  D  +    GS G+QK  L+ + 
Sbjct: 229 HLLEDSFENLLKESLEKDRMLTYTSKGIHKDDLLFEM-DHVLIKKIGSQGQQKSFLISLK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS----VF 355
           LA   L+   T   PILLLD+I   LD+ + + L  +V  +   QIF+T T +     V 
Sbjct: 288 LAQMSLVKELTKKTPILLLDDIFDKLDDIRVSQLIELVNRESFGQIFITDTHRERTESVV 347

Query: 356 DSLNETAKFMRI 367
             +NE +    +
Sbjct: 348 KKINEESIIFEV 359


>gi|218261320|ref|ZP_03476188.1| hypothetical protein PRABACTJOHN_01854 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224101|gb|EEC96751.1| hypothetical protein PRABACTJOHN_01854 [Parabacteroides johnsonii
           DSM 18315]
          Length = 367

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 157/376 (41%), Gaps = 24/376 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L+I  ++N     + F      F G+NG+GKTN+L+A+ +LS  +       + +
Sbjct: 1   MILKKLSILNYKNILQAEVSFSPDINCFFGNNGMGKTNLLDAVHYLSFCKSHINTPDSQL 60

Query: 65  TRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              G            EG E     +I+   R        + N      + E    L + 
Sbjct: 61  INNGQDMCVLQGNYDYEGREEEIFCAIRRRQRK-----QFKRNKKEYDKLSEHIGLLPLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P+   +  G S ERRRFLD ++   D  +   +I + + +  RN LL +   D+S  
Sbjct: 116 MVSPADSELIQGGSEERRRFLDVIISQQDKPYLHALIQYNKALLQRNSLLKDQCTDASLY 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFC 241
             +E Q+   G  +   R  ++N    +  EY Q    +   + L     L+        
Sbjct: 176 EVLEMQLDMYGRMVYEKRQMLVNDFIPIFNEYYQTICRSTEQVGLRYISQLE-------- 227

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
             K   +  L   R+ D +   T  G H+ +L +   D  I    GS G+ K  L+ + L
Sbjct: 228 --KGNLSDMLAANRERDRILGYTSTGIHKDELEMTLNDYLIRRV-GSQGQNKTYLIALKL 284

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360
           A    +S      PILLLD+I   LD D+   + ++V+ D   QIF+T T++   D++ +
Sbjct: 285 AQYVFLSRRGQACPILLLDDIFDKLDADRVEQIVKLVSGDQFGQIFITDTNRKYLDAILQ 344

Query: 361 T----AKFMRISNHQA 372
           +        R+   + 
Sbjct: 345 SINHGYALFRVEQGEV 360


>gi|297570616|ref|YP_003696390.1| DNA replication and repair protein RecF [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296930963|gb|ADH91771.1| DNA replication and repair protein RecF [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 410

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 104/413 (25%), Positives = 173/413 (41%), Gaps = 54/413 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +++FR+Y  + + F    T FVG+NG GKTN++EAI +L+     R  + A +
Sbjct: 1   MYISDLALNDFRSYRDVVVSFSPGITTFVGENGQGKTNLVEAIGYLATFSSHRVNADAAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ +      R + M G +   ++LE    R+ R  +IN    +  D L   +R   
Sbjct: 61  VRQGANAAV---VRAKVMHGDSPTMVELEILSGRANRA-RINRGNAQPSDVL-GIVRTVV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P    +  G    RRRFLD ++  + PR  +   D+E++ R R  LL          G
Sbjct: 116 FAPEDLELIKGDPGVRRRFLDDVMVQLRPRMAQVKADYEKVARQRAALLKTIWKARRRGG 175

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH------------- 223
             D +     ++Q+A LG +I   R  +++AL   +  Y ++ +                
Sbjct: 176 PVDETMLDIFDSQLAALGARIIGQRARIVSALRPYVEAYYREVSGGKGVARIDYAANIDA 235

Query: 224 -----------IKLSLTGFLDGKFDQSFCALKEE------YAKKLFDGRKMDSMSRRTLI 266
                      I    +G L  +  Q    L++E          L + R+ +      L+
Sbjct: 236 RSGWDFPAITDISADSSGALAAEIAQHERELQDESATAARLQATLREWREQEIERGVNLV 295

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN------TTGFAPILLLD 320
           GPHR D  V +        + S GE     + + LA  R++ +      T    PIL+LD
Sbjct: 296 GPHRDDF-VTFLGTLPAKGYASHGESWSYALSLRLASWRVLRDDDSGNWTDDGEPILILD 354

Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372
           ++ A LD  +R  L  IV + GSQ+F+T      + D L+       +     
Sbjct: 355 DVFAELDARRRQRLAAIVRE-GSQVFVTAAVGDDLPDELD--GATFYVHGGTV 404


>gi|146297979|ref|YP_001192570.1| DNA replication and repair protein RecF [Flavobacterium johnsoniae
           UW101]
 gi|189039624|sp|A5FNH5|RECF_FLAJO RecName: Full=DNA replication and repair protein recF
 gi|146152397|gb|ABQ03251.1| DNA replication and repair protein RecF [Flavobacterium johnsoniae
           UW101]
          Length = 359

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 154/372 (41%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  ++N++     FD +   FVG NG+GKTN+L+AI  L+ G+ +        
Sbjct: 1   MHLNKLSLFNYKNFSEAGFDFDIKINCFVGKNGIGKTNVLDAIYHLAYGKSYFNPLAVQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G   FF   A +E  +    I   L+       + L+ N        +    + +  
Sbjct: 61  IKHGEE-FFVIDAELEKNDRTEQIVCSLK---KGQKKVLKRNGKAYDKFSDHIGFIPLVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   +    S  RR+F+D ++  +D  +  ++I +++++  RN LL        FD+
Sbjct: 117 ISPADRDLIVEGSETRRKFMDSVISQLDSTYLHQLIQYQKVIVQRNALLKYFALNHTFDN 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              S    Q+ E G  I   R E +     +   + Q        + L            
Sbjct: 177 DTLSIYNEQLNEFGKSIFEKRKEFLEEFIPIFNVHHQAITGSEESVQLVY--------ES 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              +++    L +    D     T  G H+ DL  +     I    GS G+QK  L+ + 
Sbjct: 229 HLFEKDLLTLLQENINKDRALHYTSSGIHKDDLSFEIDSHPIK-KFGSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL- 358
           LA    +   +G  PILL D+I   LDE +   +  +V ++   Q+F++ T     +++ 
Sbjct: 288 LAQFEFLKKQSGVKPILLFDDIFDKLDETRVAKIVEMVNSETFGQLFISDTHPERTEAIV 347

Query: 359 ---NETAKFMRI 367
              ++T K   +
Sbjct: 348 KSTHQTYKIFNL 359


>gi|160887072|ref|ZP_02068075.1| hypothetical protein BACOVA_05088 [Bacteroides ovatus ATCC 8483]
 gi|260171615|ref|ZP_05758027.1| DNA repair protein RecF [Bacteroides sp. D2]
 gi|315919929|ref|ZP_07916169.1| DNA replication and repair protein recF [Bacteroides sp. D2]
 gi|156107483|gb|EDO09228.1| hypothetical protein BACOVA_05088 [Bacteroides ovatus ATCC 8483]
 gi|313693804|gb|EFS30639.1| DNA replication and repair protein recF [Bacteroides sp. D2]
          Length = 372

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 151/375 (40%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   +I   ++ R  +  +    N        +    L + 
Sbjct: 61  IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + +++  RN LL      +   
Sbjct: 117 MVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKVLAQRNTLLKSEFPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I     +   +    +     + L+     +       
Sbjct: 177 FLVWEEMMAQAGAIVFQKREAFIREFIPIFQSFYSFISQDKEVVGLSYESHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L   R+ D +   +L G H+ +L +   +  I    GS G+ K  LV + LA
Sbjct: 231 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRGHLDRILHK 347

Query: 359 -NETAKFMRISNHQA 372
                K  R+     
Sbjct: 348 VGSDYKIFRVEEGTI 362


>gi|312958105|ref|ZP_07772628.1| DNA replication and repair protein recF [Pseudomonas fluorescens
           WH6]
 gi|311287536|gb|EFQ66094.1| DNA replication and repair protein recF [Pseudomonas fluorescens
           WH6]
          Length = 367

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 160/372 (43%), Gaps = 17/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   +      +  I  G NG GKT++LEAI  L   R FR A    V
Sbjct: 1   MSLSRVSVTAVRNLHPVTFSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F +VE  EG  +++ I   +RD      ++I+    R   +L + L + 
Sbjct: 61  IQYEQLAA-TVFGQVELAEGGHSNLGI---SRDRGGEFQIRIDGQNARSAAQLAEILPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D++  
Sbjct: 117 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     D+   A+
Sbjct: 177 AAWDRELCLASDEIDEYRRAYIKALKPVFEQTLS-ELLDLEGLTLSYYRGWDKDRELSAV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L    + D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+S       I L+D++ + LDE  R AL R++ D+  Q+F+T  D  +         
Sbjct: 288 GHLVSQARRGQCIYLVDDLPSELDEQHRRALCRLLEDLRCQVFITCVDHELLREGWQTET 347

Query: 361 TAKFMRISNHQA 372
                 +   + 
Sbjct: 348 PVALFHVEQGRI 359


>gi|83591343|ref|YP_425095.1| recombination protein F [Rhodospirillum rubrum ATCC 11170]
 gi|83574257|gb|ABC20808.1| RecF protein [Rhodospirillum rubrum ATCC 11170]
          Length = 375

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 188/380 (49%), Gaps = 20/380 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-VT 65
           ++ L ++ FR Y  LRL    +  +  G NG GKTN+LEA+SFL+PGRG RRA+ AD   
Sbjct: 2   VERLTLTAFRCYDRLRLDVGPRPLVLTGPNGAGKTNLLEALSFLAPGRGLRRAALADPCR 61

Query: 66  RIGSPSF-----FSTFARVEGMEGL------ADISIKLETRDDRSVRCLQINDVVIRVVD 114
           R+G  +      ++  A +    G        D+   LE       R ++I+        
Sbjct: 62  RVGGDAATAGPPWAVAAHLRLPAGPGTLGRGVDVGTGLERATAGERRLVRIDGATAGQAA 121

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            L     + WL P MD +F G + ERRRFLDR+V  +DP H  R   + +  R R RLL 
Sbjct: 122 -LGDLFSVLWLTPEMDGLFRGGASERRRFLDRLVNGLDPDHAGRTAAYAQAQRERARLLR 180

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           EG     W   +E  MA  GV I  AR ++++ L + +        FP  ++ L   +DG
Sbjct: 181 EGRASRGWLDGLEDVMARHGVAIVAARRDLVDRLGAAVRA--ATGPFPGARIDLVSEVDG 238

Query: 235 KFDQSFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                   A ++     L   R  ++ +     GPHR DL V +  K I     STGEQK
Sbjct: 239 WLAAGPALAAEDRLRAALAMARGPEAPA----PGPHRDDLAVRHGPKDIPAVQASTGEQK 294

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            VL+ + LA AR+       AP+LLLDE  AHLD  +R AL   ++  G Q +++GT+  
Sbjct: 295 AVLIALILAQARVQEAARAVAPLLLLDEGVAHLDAPRRAALGEALSGQGLQAWVSGTEAQ 354

Query: 354 VFDSLNETAKFMRISNHQAL 373
            FDS  + A+F+RI+    L
Sbjct: 355 AFDSWAKNAQFLRIAEGAVL 374


>gi|304439075|ref|ZP_07398994.1| recombination protein F [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372434|gb|EFM26021.1| recombination protein F [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 361

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 98/368 (26%), Positives = 177/368 (48%), Gaps = 13/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  FRNY  L+L+      +FVG N  GKTN++E+I+    G  FR +  A++
Sbjct: 1   MKLKSLQLINFRNYEDLKLIPSETLNLFVGKNAQGKTNLIESIAVSISGSSFRTSKNAEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             +G+ S  +  + +E    L   SI +++   +      IN   I  + +  K      
Sbjct: 61  IELGNKS-SNIISEIEKKGRLEKRSIYIDSSGIK----HSING-KITTLKDFTKSSAAVI 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    I      +RRR+LD ++  +D  +R  +  +++++  +N+ L     D +   
Sbjct: 115 FKPDDLYIIKNSPSDRRRYLDDIISNLDSIYRYNLNSYKKVLYEKNKALKVNNND-TLLD 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+++   +I I R+ +I  L S   EY +  +    K++    ++    ++   L 
Sbjct: 174 IYDRQLSKFASEILIKRLNIIKILESYAKEYYKTLSGCDFKITYLSTIN--LKKTREELV 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           EE+   L   R +D     T IGPHR D+     DK++    GS GE +  ++ + LA  
Sbjct: 232 EEFLNALRSRRHIDKRKLYTSIGPHRDDIDFKINDKSVK-NFGSQGEIRSSILVLKLAEL 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNETAK 363
           + I N     P+LLLD++ + LD  +R+AL   +   G Q F+T T+  + DS +++ +K
Sbjct: 291 KYILNVLNITPVLLLDDVLSELDSTRRDALLTSIE--GIQTFITSTNSEIIDSYIDDNSK 348

Query: 364 FMRISNHQ 371
              I N +
Sbjct: 349 VFMIENGK 356


>gi|255016100|ref|ZP_05288226.1| putative DNA replication and repair protein [Bacteroides sp. 2_1_7]
          Length = 365

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 157/375 (41%), Gaps = 22/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N     ++F  +   F G+NG+GKTN+L+AI +LS  +       + +
Sbjct: 1   MILKKLSVLNYKNILQSEVIFSPKMNCFFGNNGMGKTNLLDAIHYLSFCKSHVNTPDSQI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                          +      +I   +  R  +     + N      + E    L +  
Sbjct: 61  INSDQD-LCVVQGNYDYEGREEEIFCAMRRRQRK---QFKRNKKEYDKLSEHIGLLPLVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P+   +  G S ERRRFLD ++   D  +   +I + + +  RN LL +   D+S   
Sbjct: 117 VSPADADLIRGGSDERRRFLDLIISQQDKPYLHALIQYNKALLQRNTLLKDQSMDASLYE 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCA 242
            +E Q+   G  +   R +++   + +  EY Q    +   + L     L+         
Sbjct: 177 VLEMQLGMYGQIVYEKRKKLVEDFTPIFNEYYQTICGSAEEVGLHYISQLE--------- 227

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            + E A KL   R+ D +   T  G H+ +L +      I    GS G+ K  L+ + LA
Sbjct: 228 -ETELAGKLAMSRERDRILGYTSSGIHKDELEMTLGGYLIRRV-GSQGQNKTYLIALKLA 285

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL--- 358
               ++      PILLLD+I   LD  +   + ++V++ G  QIF+T T++   D +   
Sbjct: 286 QFAFLNKRGRTTPILLLDDIFDKLDASRVEQIIKLVSENGFGQIFITDTNRKYLDEILLA 345

Query: 359 -NETAKFMRISNHQA 372
            N      R+   + 
Sbjct: 346 MNHDYALFRVERGEV 360


>gi|257464818|ref|ZP_05629189.1| recombination protein F [Actinobacillus minor 202]
 gi|257450478|gb|EEV24521.1| recombination protein F [Actinobacillus minor 202]
          Length = 361

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/370 (20%), Positives = 156/370 (42%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FRN  ++ L    Q    +G NG GKT++LE+I +L  GR F+      +
Sbjct: 1   MPLSRLIVQNFRNLQAVDLTLSPQFNFIIGANGSGKTSLLESIFYLGHGRSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +   F    ++E  +    + I+ +   + +   L+IN      + +L + L +  
Sbjct: 61  IHHDAD-HFVLHGKIEEAQHSWSVGIQKQRSGETT---LKINGEDGNKIADLAQLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR FLD  +F          ++ +RL++ RN  L +         
Sbjct: 117 ITPEGLTLLNDGPSYRRAFLDWGLFHQHAEFYSDWVNLKRLLKQRNAALHQVRSYFE-LK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++A+L  K++  R   + A+   I +   +   P + + ++ +   +         
Sbjct: 176 AWDIELAKLAEKVSQMRAAYVEAILPEIDKTC-RFFLPELDIQISFYQGWEK-------G 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L  G + D     T++GP ++DL +      +     S G+ K+++  + LA  
Sbjct: 228 ADYADILAQGFERDQNLGYTMMGPQKADLRIKANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL----NE 360
             +        + L+D+ ++ LD  KR  L + + +  SQ+F+T   K   + +    ++
Sbjct: 287 EFLMTQKARQCLFLVDDFASELDPTKRELLSQRLRESHSQVFVTAITKEQLNQMQWQEHQ 346

Query: 361 TAKFMRISNH 370
           T     +   
Sbjct: 347 TDSSFEVKEG 356


>gi|309388285|gb|ADO76165.1| DNA replication and repair protein RecF [Halanaerobium praevalens
           DSM 2228]
          Length = 374

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 166/376 (44%), Gaps = 15/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ +    FRN+  L L  +    IF+G NG GKTN LE+I  ++     R +  +++
Sbjct: 1   MYLERVLCRNFRNFKELMLDLNPNLNIFLGANGQGKTNFLESIYLMATANSHRSSISSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       + V+ +    +  IKL  R +++ + ++IND  +  V EL  +L    
Sbjct: 61  INWQQNK-----SLVQLLLRRREGKIKLAMRLEKNNKQVEINDNPLDKVKELFGYLNAVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DS 180
             P   ++       RR F+D  +  + P +   +  ++ L+  RN+LL         + 
Sbjct: 116 FSPEDLKLIKEGPSHRREFIDLEISQVSPYYNHLLSKYDHLLSQRNKLLKSIREGKSKNR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALS--SLIMEYVQKENFPHIKLSLTGFL-DGKFD 237
                 + Q+A +G KI + R+E+IN L   + + +    E   +++L     L      
Sbjct: 176 EMLPVWDEQLATIGTKIILKRIEVINKLKILARLSQRKITEGRENLELEYDTSLNHFSPK 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                L+  +   L   R  +     T+IGPHR D+I+   +  +   +GS G+Q+   +
Sbjct: 236 MGEAELRNLFIDSLISKRDQEISRGYTVIGPHRDDIILRVNEMNLR-KYGSQGQQRTAAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA    + + TG  P+LLLD++ + LD  +R AL  I+ D   Q  +T TD      
Sbjct: 295 ALKLAELEFMKSETGEYPVLLLDDVFSELDGLRRKALINIIADK-IQTIITATDGENLSG 353

Query: 358 LNETA-KFMRISNHQA 372
           L   +    ++   + 
Sbjct: 354 LKNNSYNVYQVKKGRI 369


>gi|310817865|ref|YP_003950223.1| DNA replication and repair protein RecF [Stigmatella aurantiaca
           DW4/3-1]
 gi|309390937|gb|ADO68396.1| DNA replication and repair protein RecF [Stigmatella aurantiaca
           DW4/3-1]
          Length = 481

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/375 (24%), Positives = 161/375 (42%), Gaps = 14/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L    FRN   + L      TI VG NG GKTN+LEA+ FL+  +  R    A++
Sbjct: 1   MRLLALQAQNFRNLHQVSLAPSPHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       ARV G   L     ++       VR   ++      ++E    + +  
Sbjct: 61  VRWGTKG-----ARVSGRFLLKGAEREISVEVGGGVRQAFVDGKKASSLEEYFGGVAVVA 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-DSSWC 183
             P    +  G    RR FLDR VF   P   +   D+ R ++ RNRLL +G   ++++ 
Sbjct: 116 FTPDDLEVVKGGPEARRTFLDRAVFNRFPAFLKESRDYARALKNRNRLLRDGPAAEAAYL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            + +  +A  G ++ + R  ++  L+              +  +  G+      Q F  +
Sbjct: 176 DAYDETLARAGARVYVRRRALMAELAPRAQATFASIGR-TVDPAAYGYHPAHLAQEFAEV 234

Query: 244 KEEYAKKLFD-----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            E              R+ D     T +GPH  D+ V    ++    + S G+Q+ +++G
Sbjct: 235 DEVRLADALLEALAGRRRRDLERGFTSVGPHVDDVAVTLGGRSARA-YASQGQQRALVLG 293

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
             +A    +    GF P+LLLD++S+ LD ++   L   +   G+Q+F+T TD S+   +
Sbjct: 294 WKIAEIENLHAALGFLPLLLLDDVSSELDPERNAYLMGYLAASGAQVFLTTTDASLVRAA 353

Query: 358 LNETAKFMRISNHQA 372
                 +M +   Q 
Sbjct: 354 AAHDTLWMDVHAGQV 368


>gi|33151998|ref|NP_873351.1| recombination protein F [Haemophilus ducreyi 35000HP]
 gi|51316363|sp|Q7VMW3|RECF_HAEDU RecName: Full=DNA replication and repair protein recF
 gi|33148220|gb|AAP95740.1| DNA replication and repair protein RecF [Haemophilus ducreyi
           35000HP]
          Length = 360

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 149/371 (40%), Gaps = 18/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN  ++ L         VG NG GKT++LEAI +L  GR F+      +
Sbjct: 1   MPLSRLLINNFRNLQAIDLELSPDFNFIVGHNGSGKTSLLEAIFYLGHGRSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               + +F    ++++  +    + ++     D     L+IN    + + +L   L +  
Sbjct: 61  IHHHAENF-VLHSKIDETQHQWSVGLQKNRAGDT---LLKINGEDGKKIADLAHLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           + +RL++ RN  L +     S   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHQHLEFYSYWANLKRLLKQRNAALPQ-VKSYSELK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L   +   R E   AL   I E   +   P + + ++     +         
Sbjct: 176 AWDIELVRLAHLVTKMRTEYAEALRPEI-EKTCRFFLPELPIRVSFHQGWE-------NG 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L  G + D     T++GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYADVLRQGFERDQNIGYTMVGPQKADFRFKANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----E 360
             +        + L+D+ ++ LD  KR  L   + + GSQ+F+T       + ++     
Sbjct: 287 EYLVTQKKRQCLFLIDDFASELDPMKRELLAHRLRETGSQVFVTAITAEQLNQMHWQEYA 346

Query: 361 TAKFMRISNHQ 371
             K   +   +
Sbjct: 347 QDKLFHLKEGK 357


>gi|229587581|ref|YP_002869700.1| recombination protein F [Pseudomonas fluorescens SBW25]
 gi|259563668|sp|C3KDU4|RECF_PSEFS RecName: Full=DNA replication and repair protein recF
 gi|229359447|emb|CAY46288.1| DNA replication and repair protein RecF [Pseudomonas fluorescens
           SBW25]
          Length = 367

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 88/373 (23%), Positives = 158/373 (42%), Gaps = 15/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   +      +  I  G NG GKT++LEAI  L   R FR A    V
Sbjct: 1   MSLSRVSVTAVRNLHPVTFSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    +  + F +VE  EG    S+ +  RD      ++I+    R   +L + L +  
Sbjct: 61  IQYEQLAC-TVFGQVELAEGGHS-SLGIS-RDRGGEFQIRIDGQNARSAAQLAEILPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D++  +
Sbjct: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++   A+ 
Sbjct: 178 AWDRELCLASDEIDEYRRAYIKALKPVFEQTLS-ELLDLEGLTLSYYRGWDKERELSAV- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L    + D     T  GP R+DL +            S G+QK+V+  + +A  
Sbjct: 236 ------LATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNET 361
            L+S       I L+D++ + LDE  R AL R++ ++  Q+F+T  D  +          
Sbjct: 289 HLVSQARRGQCIYLVDDLPSELDEQHRRALCRLLEELRCQVFITCVDHELLREGWQTETP 348

Query: 362 AKFMRISNHQALC 374
                +   +   
Sbjct: 349 VALFHVEQGRITQ 361


>gi|258510024|ref|YP_003183458.1| DNA replication and repair protein RecF [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257476750|gb|ACV57069.1| DNA replication and repair protein RecF [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 371

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 77/371 (20%), Positives = 148/371 (39%), Gaps = 12/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + + +FRNYA   +       + VG+NG GKTN LEA+  ++ G+  R     D+
Sbjct: 1   MDIRRVELHDFRNYAKAEIELSPGVNVLVGENGQGKTNALEAMLLIAVGKSHRAHRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R                 G   ++++L        R    N V +  + E    +++  
Sbjct: 61  IRWEQDRA-RILLEASTRYGDRRLTLEL----GPEGRRAFANGVQVGRMTEFVGQVQVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--FDSSW 182
             P    +  G    RRRFLD  +  ++P +   +  + R +  RNR L       D   
Sbjct: 116 FAPEDLDLVKGSPRVRRRFLDTELGQMEPLYLHHLSLYNRALLQRNRWLKTAPLSPDDDV 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFDQS 239
            ++ + Q+A  G  +   R+  +  L +              + +L   +     +   S
Sbjct: 176 LATFDRQIAFHGAHVIHRRLRFLARLRAYAARIYSDIASGREEFALAYRSSVSGVEEGMS 235

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              + +   + L   R  D     T  GPHR D+++    + +  A  S G+Q+ + + +
Sbjct: 236 VEEMADTVQRALEKNRAQDLRFGTTSAGPHRDDILLFLDGREVHTA-ASQGQQRTIALSL 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA    +    G  P+LLLD++ + LD+ ++  L   ++    Q  +T T  +      
Sbjct: 295 RLAEIDFMHEELGEYPVLLLDDVLSELDDLRQRNLVLGMSRK-VQTVITTTSLNRLGQEL 353

Query: 360 ETAKFMRISNH 370
           +  +  R+ + 
Sbjct: 354 DDFRLFRVCSG 364


>gi|108763273|ref|YP_628527.1| DNA replication and repair protein RecF [Myxococcus xanthus DK
           1622]
 gi|122981391|sp|Q1DFP6|RECF_MYXXD RecName: Full=DNA replication and repair protein recF
 gi|108467153|gb|ABF92338.1| DNA replication and repair protein RecF [Myxococcus xanthus DK
           1622]
          Length = 380

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 92/374 (24%), Positives = 165/374 (44%), Gaps = 12/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++ +FRN   ++L   A  TI VG NG GKTN+LEA+ FL+  +  R    +++
Sbjct: 1   MRLLALHVHDFRNLPQVQLTPSAHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLSEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS       ARV G   L     ++        R   ++      +++    + +  
Sbjct: 61  VRWGSQG-----ARVTGRFLLKGAEREIAVEVGGGTRQAFVDGKKASSLEDYFGGVSVVA 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P    +  G    RR FLDR VF   P   R   ++ R ++ RNRLL EG+  D+ + 
Sbjct: 116 FTPDDLEVVKGGPDSRRGFLDRAVFNRFPAFLRESREYARALKNRNRLLREGHTVDAVYL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF---PHIKLSLTGFLDGKFDQSF 240
            + +  +A+ G +I   R  ++  L+               P +       L+G F  + 
Sbjct: 176 EAYDETLAKAGARIYSRRRALMAELAPRAQATFASIGRTVDPAVYNYRPAHLEGDFAAAD 235

Query: 241 CALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                    + L    + D     T +GPH  D+ V    ++    + S G+Q+ +++G 
Sbjct: 236 ETALAAMLRESLSARLRRDMERGFTSVGPHSDDVSVTLGGRSARA-YASQGQQRALVLGW 294

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSL 358
            +A    +    GF P+LLLD++S+ LD ++   L   +   G+Q+ +T TD S+   + 
Sbjct: 295 KIAEIENLEAAMGFLPLLLLDDVSSELDPERNAYLMGYLAQSGAQVVLTTTDGSLVRGAA 354

Query: 359 NETAKFMRISNHQA 372
            +   ++ +   Q 
Sbjct: 355 ADDTLWLDVHGGQV 368


>gi|154491038|ref|ZP_02030979.1| hypothetical protein PARMER_00957 [Parabacteroides merdae ATCC
           43184]
 gi|154088786|gb|EDN87830.1| hypothetical protein PARMER_00957 [Parabacteroides merdae ATCC
           43184]
          Length = 367

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 157/376 (41%), Gaps = 24/376 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L+I  ++N     + F  +   F G+NG+GKTN+L+A+ +LS  +       + +
Sbjct: 1   MILKKLSILNYKNILQAEVSFSPEINCFFGNNGMGKTNLLDAVHYLSFCKSHINTPDSQL 60

Query: 65  TRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              G            EG E     +I+   R        + N      + E    L + 
Sbjct: 61  INNGQDMCVLQGNYDYEGREEEIFCAIRRRQRK-----QFKRNKKEYDKLSEHIGLLPLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P+   +  G S ERRRFLD ++   D  +   +I + + +  RN LL +   D+S  
Sbjct: 116 MVSPADSELIQGGSEERRRFLDVIISQQDKPYLHALIQYNKALLQRNSLLKDQCIDASLY 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFC 241
             +E Q+   G  +   R  ++N    +  EY Q    +   + L     L+        
Sbjct: 176 EVLEMQLDMYGRMVYEKRQMLVNDFIPIFNEYYQTICRSTEQVGLRYISQLE-------- 227

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
             K   A  L   R+ D +   T  G H+ +L +      I    GS G+ K  L+ + L
Sbjct: 228 --KGSLADMLAANRERDRILGYTSTGIHKDELEMTLNGHLIRRV-GSQGQNKTYLIALKL 284

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNE 360
           A    +S      PILLLD+I   LD D+   + ++V+ D   QIF+T T++   D++ +
Sbjct: 285 AQYVFLSCRGQARPILLLDDIFDKLDADRVEQIVKLVSGDQFGQIFITDTNRKYLDAILQ 344

Query: 361 T----AKFMRISNHQA 372
           +        R+   + 
Sbjct: 345 SINHGYALFRVEQGEV 360


>gi|154496130|ref|ZP_02034826.1| hypothetical protein BACCAP_00414 [Bacteroides capillosus ATCC
           29799]
 gi|150274685|gb|EDN01749.1| hypothetical protein BACCAP_00414 [Bacteroides capillosus ATCC
           29799]
          Length = 367

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 159/373 (42%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  FRNY  L   F     +  G+N  GKTN+LEAI +LS     R     ++
Sbjct: 1   MIVKSITLDFFRNYPHLETAFSPDVNVICGENAQGKTNLLEAIGYLSTASSRRARYDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123
            + G        A V+      +    LE R  RSVR  L  N V ++   EL   L   
Sbjct: 61  IQFG-----VDHAFVKAEVFSRERDFTLEARLGRSVRRQLLSNGVKLKTAGELAGVLNTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    +    + ERRRFLD  +  + PR+   + ++ RL   + R+L +     S  
Sbjct: 116 FFCPEDLMLIREGAAERRRFLDECICQLRPRYAAALAEYRRLHEQKTRILRDWEEKPSLL 175

Query: 184 SSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +++    +MA+ G  +   R   +  L        ++ +    +L L            
Sbjct: 176 DTLDDFNLRMAQTGAILIHYRAHFVRRLRETAPPIHREFSGGREELGLKYETVSTVTDPE 235

Query: 241 CALKEEYAKKLFDG---RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
             +K+  +  +      R+ +  +R+ L GPH+ DL V+           S G+ +   +
Sbjct: 236 GGVKDILSALIAHQESHRRAELEARQCLSGPHKDDLTVEL-GGVAARQFASQGQTRTAAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA   +    TG  P+LLLD++ + LD+ +++ +   +   G Q+F+T  +    + 
Sbjct: 295 SLKLAAREIFYGDTGEWPVLLLDDVLSELDQRRQSFVLNRIK--GGQVFITCCEDEKLEH 352

Query: 358 LNETAKFMRISNH 370
           L E  K +RI N 
Sbjct: 353 L-EGGKVLRIHNG 364


>gi|261880338|ref|ZP_06006765.1| recombination protein F [Prevotella bergensis DSM 17361]
 gi|270333029|gb|EFA43815.1| recombination protein F [Prevotella bergensis DSM 17361]
          Length = 375

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 159/375 (42%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N ++ +L F  +   F+G+NG GKTN+L+AI +LS            V
Sbjct: 1   MVLKNISIINYKNISAAQLAFSPKINCFIGNNGEGKTNLLDAIYYLSFCHSCFTNIDGQV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F      V     + +I++ L+       +    N    + + E    + + +
Sbjct: 61  LMHDKEFFVIDGEYVTDSGEIENINVGLKRGRG---KRFSRNKKNYKRLSEHIGLIPLIF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             PS   + +G   ERR+ +D ++   D R+   +  + +  + RN LL  E   D++  
Sbjct: 118 ASPSDMTLVNGGGEERRKLMDIVIAQYDNRYIDALNAYNKAWQQRNALLKMEEEPDNTLL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E +MAE G  +   R   +  L+ +  E  Q  +    K+SL     G+        
Sbjct: 178 DLWETEMAEQGEIVYRKRDSFVKELTPVFQEIYQYISGQQEKVSLRYVSHGQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +    + +   R  D     +L G HR +L +   D  +    GS G+ K  ++ + LA 
Sbjct: 230 RGNLLEVIQRDRFKDRAVGYSLHGIHRDELEMLIGDYPMKRE-GSQGQIKTYVLALKLAQ 288

Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
              +    +   P+LLLD+I   LD  +   + R+V+ D   QIF+T T++   D +   
Sbjct: 289 FDFLRRTASNTTPLLLLDDIFDKLDSQRVEQIVRLVSGDNFGQIFITDTNRGHLDKILSH 348

Query: 359 -NETAKFMRISNHQA 372
            +   K   + + + 
Sbjct: 349 NHGEYKLFDVKSGEI 363


>gi|237721344|ref|ZP_04551825.1| DNA replication and repair protein RecF [Bacteroides sp. 2_2_4]
 gi|229449140|gb|EEO54931.1| DNA replication and repair protein RecF [Bacteroides sp. 2_2_4]
          Length = 372

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 150/375 (40%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   +I   ++ R  +  +    N        +    L + 
Sbjct: 61  IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL      +   
Sbjct: 117 MVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKALAQRNALLKSEFSVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I     +   +    +     + L+     +       
Sbjct: 177 FLVWEEMMAQAGAIVFQKREAFIREFIPIFQSFYSFISQDKEVVGLSYESHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L   R+ D +   +L G H+ +L +   +  I    GS G+ K  LV + LA
Sbjct: 231 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGWTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRGHLDRILHK 347

Query: 359 -NETAKFMRISNHQA 372
                K  R+     
Sbjct: 348 VGSDYKIFRVEEGTI 362


>gi|119961476|ref|YP_945837.1| recombination protein F [Arthrobacter aurescens TC1]
 gi|166220697|sp|A1R0S5|RECF_ARTAT RecName: Full=DNA replication and repair protein recF
 gi|119948335|gb|ABM07246.1| putative DNA replication and repair protein RecF [Arthrobacter
           aurescens TC1]
          Length = 399

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/392 (25%), Positives = 167/392 (42%), Gaps = 41/392 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++++FR+YA + L      T+ VG NG+GKTN++EAI +L+     R ++ A +
Sbjct: 1   MYLEHLSLTDFRSYAQVDLKLGPGVTVLVGSNGIGKTNLMEAIGYLATLSSHRVSTDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+        R + + G     I+LE    R+ R        +R  D L    +   
Sbjct: 61  LRFGTERALI---RAKLVRGEQSTVIELEINAGRANRGRINRSNPVRARDIL-GICQTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------F 178
             P    +  G    RRRFLD ++ ++ PRH     D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPSNRRRFLDELLVSLVPRHAATRSDYDRVLKQRNALLKSARTGKFTAG 176

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTGFL 232
             +     +  MA  G ++  AR+E++  L   +           K+     + ++ G L
Sbjct: 177 HEATLDVWDQHMARAGAELLHARLELVERLRPHLNSAYAQLTDASKDAGAVYRSTIQGVL 236

Query: 233 DGKFDQ-----------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
           D                      S   L E Y +     RK +     +L+GPHR +L +
Sbjct: 237 DDDGGPTDHGTEPSPSVDDLRLLSVDELTERYVQAFAASRKKELERGISLVGPHRDELEL 296

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAP--ILLLDEISAHLDEDK 330
               +A    + S GE   + + + LA   ++   + T G AP  IL+LD++ A LD  +
Sbjct: 297 -VLGQAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGTAPILILILDDVFAELDVHR 355

Query: 331 RNALFRIVTDIGSQIFMT-GTDKSVFDSLNET 361
           R  L  IV     Q+ +T   D  + + L   
Sbjct: 356 RRKLAAIVAGAE-QVLVTAAVDADIPEELAGR 386


>gi|255693357|ref|ZP_05417032.1| RecF protein [Bacteroides finegoldii DSM 17565]
 gi|260620834|gb|EEX43705.1| RecF protein [Bacteroides finegoldii DSM 17565]
          Length = 369

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 152/373 (40%), Gaps = 20/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEEVELGFSAKLNCFFGQNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   +I   ++ R  +  +    N        +    L + 
Sbjct: 61  IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL  E   +   
Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLDALIRYNKALTQRNTLLKSELPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I     +   +    +    ++ L+     +       
Sbjct: 177 FLVWEEMMAQAGEVVFKKREVFIKEFIPIFQSFYSFISQDKEQVGLSYDSHAR------- 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            +    + L   R+ D +   +L G H+ +L +   +  I    GS G+ K  LV + LA
Sbjct: 230 -EASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNREHLDRILHK 347

Query: 359 -NETAKFMRISNH 370
                K   +   
Sbjct: 348 VGSDYKMFLVEKG 360


>gi|300857420|ref|YP_003782403.1| DNA replication and repair protein [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300684874|gb|ADK27796.1| DNA replication and repair protein [Corynebacterium
           pseudotuberculosis FRC41]
          Length = 421

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 97/383 (25%), Positives = 161/383 (42%), Gaps = 34/383 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L++ +FR++A   +  +   T+FVG NG GKTNI+EAI +++     R +  + +
Sbjct: 18  VYIRELSLRDFRSWADCHVNLEPGVTVFVGRNGFGKTNIVEAIGYIAHLGSHRVSQDSPL 77

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              G  S   S  A  +G E  A + IK      +     QIN   ++    L   +R  
Sbjct: 78  VHQGKDSARVSVTAVNQGRELTAHMLIK-----SKGTNQAQINRTRLKSPRGLLGVVRTV 132

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-- 181
              P    +  G   ERRR+LD +V    PR      D++++++ RN LL          
Sbjct: 133 LFSPEDLSLVRGEPGERRRYLDHIVATRKPRLAGVKADYDKVLKQRNSLLKTASASLRRG 192

Query: 182 ---------WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTG 230
                         +AQ+A LG ++  AR  ++  L+ L+     +        +++   
Sbjct: 193 YGADDGTLCTLDVWDAQLARLGSELIHARHSLVEELTPLVHSAYARIAPESRPARINYES 252

Query: 231 FLDGKFD-----------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
            +                     L+     +L   RK +     TL+GPHR DL V   D
Sbjct: 253 TVPVPVAVTDAEEASSSIPDLDVLEASMLSQLGVQRKKEIDRGLTLVGPHRDDLAVLLGD 312

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
                 + S GE   + + + LA   L+S   G  PIL+LD++ A LD  +R  L  I  
Sbjct: 313 YPAK-GYASHGETWSMALALRLAEFHLLS-ADGSEPILILDDVFAELDSKRRQKLVGIAM 370

Query: 340 DIGSQIFMT-GTDKSVFDSLNET 361
           +   Q+ +T      + D+L E+
Sbjct: 371 EAE-QVLITAAVGDDLPDNLAES 392


>gi|330890247|gb|EGH22908.1| recombination protein F [Pseudomonas syringae pv. mori str. 301020]
          Length = 368

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 161/375 (42%), Gaps = 18/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + +  ++++  RN   + L     +  I  G NG GKT++LEAI  L   R FR +    
Sbjct: 1   MSLSRVSVTGVRNLHPVTLSPPSPRINILYGANGSGKTSVLEAIHLLGIARSFRSSRLLP 60

Query: 64  VTRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           V +   PS  + F +V+    G +++ +   +RD +    ++I+    R   +L + L +
Sbjct: 61  VIQYEQPSC-TVFGQVDLAQGGHSNLGV---SRDRQGEFQIRIDGQNARSAAQLAEILPL 116

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             + P   R+  G    RR+FLD  VF ++PR        ++ ++ RN  L  G  D++ 
Sbjct: 117 QLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMVTWQRLQKALKQRNSWLRHGTLDAAS 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            ++ + ++     +I+  R   I AL  +  + +  E      L+L+ +     ++    
Sbjct: 177 QAAWDRELCSASDEIDEFRRAYIKALKPVFEQTL-GELVELEGLTLSYYRGWDKEKELST 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +       L      D     T  GP R+DL +            S G+QK+V+  + +A
Sbjct: 236 V-------LASSLHRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LN 359
              L+S       I L+D++ + LD++ R AL R++ ++  Q+F+T  D+          
Sbjct: 288 QGHLVSQVRRGQCIYLVDDLPSELDDNHRRALCRLLEELRCQVFITCVDQEFLREGWQTE 347

Query: 360 ETAKFMRISNHQALC 374
                  +   +   
Sbjct: 348 TPVALFHVKQGRITQ 362


>gi|298372052|ref|ZP_06982042.1| RecF protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274956|gb|EFI16507.1| RecF protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 364

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 156/374 (41%), Gaps = 19/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +NI  +RN     LVF  +  +F G+NG+GKTN+L+A+ +LS  +    A    +
Sbjct: 1   MYLKKINILNYRNIEESELVFSPKINLFWGNNGMGKTNLLDAVYYLSFCKSHLNAIDNQL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +  FF         + +A +S  ++ R  +       N      + +    + +  
Sbjct: 61  IRHDTD-FFIIQGEYVFPDSIAKVSCSVKRRRKKQ---FLYNKKEYERLADHIGRIPLVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
           + PS   + S  S ERRRF+D ++   +  +   +I +   ++ RN +L    Y D +  
Sbjct: 117 VSPSDSSLISEGSDERRRFMDIIISQYNREYLDNLISYNSALKSRNAMLKNNDYIDETML 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + ++      I   R E I     +  ++ ++ +    ++ L      +        
Sbjct: 177 EVFDEKLCANAAPIFRERTEFITNFIPVFKDFYRRISNKKEEVDLRYLSSLEH------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             E   KL   R  D     T  G H+ DL +     ++     S G+ K  LV + LA 
Sbjct: 230 -TELRDKLLQSRAKDKYLGFTTAGIHKDDLDMTLDGFSLKRT-ASQGQSKSYLVAMKLAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL---- 358
              +   +G  PILLLD+I   LD ++   + R ++ D   QIF+T T+    D L    
Sbjct: 288 FVFLKQISGKTPILLLDDIFDKLDAERVENIIREISEDDFGQIFITNTNHEHIDKLISNN 347

Query: 359 NETAKFMRISNHQA 372
           ++  +   I   + 
Sbjct: 348 SQDFRLFAIEEGKV 361


>gi|188995431|ref|YP_001929683.1| putative DNA replication and repair protein RecF [Porphyromonas
           gingivalis ATCC 33277]
 gi|226737817|sp|B2RL41|RECF_PORG3 RecName: Full=DNA replication and repair protein recF
 gi|188595111|dbj|BAG34086.1| putative DNA replication and repair protein RecF [Porphyromonas
           gingivalis ATCC 33277]
          Length = 364

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 96/376 (25%), Positives = 157/376 (41%), Gaps = 18/376 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L+I  F++ A+    F  +    VG+NG+GKTN+L+A+ FLS  R         V
Sbjct: 1   MIIEELHIVNFKSIAAADCRFSPKVNCLVGNNGMGKTNLLDALHFLSFCRSHLSVPDNMV 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   +      R E  +G   I + L  R  +  + L+ N      + +   H  + 
Sbjct: 61  VRHGEEMALLQGLYRDESGDG---IELLLSIRPGK-HKVLRRNKKEYERLSDHIGHFPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   ++  G S ERRRF+D+ +   DPR+   +I + R ++ RN +L +   D +  
Sbjct: 117 IVSPQDYQLILGGSDERRRFMDQQLCQQDPRYLSALIQYNRHLQQRNTMLKQDRHDDALM 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E QM     +I   R   I     +  +     +    K+SL+             L
Sbjct: 177 DVLELQMGSYAAEIYNKRSRFIEDFLPVFNDLYSDISGSAEKVSLSYRSHLADGIPLEEL 236

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L   R  D +   +  G H+ +L +      +    GS G+ K  L+ + LA 
Sbjct: 237 -------LRRSRPKDYLLGFSSCGVHKDELEM-LLGGVLIRKIGSEGQNKTFLISMKLAQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL---- 358
            R         PILLLD+I   LD  +   + R+V   G  QIF+T T++   D +    
Sbjct: 289 FRHQQLHGDETPILLLDDIFDKLDATRVERIIRLVGGNGFGQIFITDTNRKNLDEIIASW 348

Query: 359 NETAKFMRISNHQALC 374
           +E  +   I N Q   
Sbjct: 349 SEDYRLFEIENGQIFQ 364


>gi|78043999|ref|YP_361489.1| DNA recombination/replication protein RecF [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|123575248|sp|Q3A8P5|RECF_CARHZ RecName: Full=DNA replication and repair protein recF
 gi|77996114|gb|ABB15013.1| DNA recombination/replication protein RecF [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 353

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 87/368 (23%), Positives = 161/368 (43%), Gaps = 16/368 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FRNY  L + F     +  G NG GKTN++EAI +L  G+ FR      +
Sbjct: 1   MFVDRLQLLNFRNYEELLIDFSPGKILIYGANGQGKTNLIEAIYYLVIGKSFRG-KDNSL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ SF    A++        + ++   +     +    N    +    +  +L+   
Sbjct: 60  IRFGAESF-QIGAKISKNGQKTTLGVEYSVKG----KFFLKNGQKQKSFSSILGNLKGVL 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    IF G    RR+ LD  +      +   +I +++++  +N LL + +   +   
Sbjct: 115 FTPDEPVIFFGFPANRRKALDLFLAQTSKTYLLNLIYYQKVLTNKNALLKQVWNVDNLIE 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +   ++AE G +I   R + +  L+ +I E   +  F      L G ++  +  S    K
Sbjct: 175 AWNYKLAEFGAEIIKEREKCLKILNDIINELNAQLRF------LPGKIEASYKTSGADDK 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  + L      +   ++ L GPHR DL      + + I  GS G++K  L+   L+ A
Sbjct: 229 EKIFELLKQKYTEEKDKKQALFGPHRDDLNFYVNGRDLKI-FGSQGQKKGALLLFKLSQA 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             ++  +G  P++LLD++ +  D++KR AL         Q+F+T T+      L    + 
Sbjct: 288 VYMAKVSGEKPVVLLDDLYSEFDKEKREALEGFFLKYSDQVFITATEPI---DLKNYHQV 344

Query: 365 MRISNHQA 372
           + I N + 
Sbjct: 345 VFIENGKV 352


>gi|88860614|ref|ZP_01135251.1| gap repair protein with nucleoside triP hydrolase domain
           [Pseudoalteromonas tunicata D2]
 gi|88817209|gb|EAR27027.1| gap repair protein with nucleoside triP hydrolase domain
           [Pseudoalteromonas tunicata D2]
          Length = 364

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 165/374 (44%), Gaps = 17/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRN A L         I  G+NG GKT++LEAI +LS G+ FR   Y  +
Sbjct: 1   MSLELVTVKNFRNLADLSFSPVDGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTIKYKTI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    +F    A+    + L  + I      D     L+I   V R + EL + + +  
Sbjct: 61  IQHHQDTF-VIHAKKRIDQLLLPVGISKNQAGDTE---LKIQGKVSRKIAELAELIPVQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-SWC 183
           + P    +F G   ERR+FLD  +F ++       + F +L++ RN LL +   +     
Sbjct: 117 ITPESYALFFGGPKERRKFLDFGLFHVEHHFFSLWLSFNKLLKQRNALLKQKPHNYHEQI 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + +   L ++IN  R   +    S+  + +         L+L   L+ K++  +   
Sbjct: 177 KYWDKEFVRLSLEINTLRKTYLERFRSVFFDKIAAN------LTLIVNLEIKYNSGWKD- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + E ++ L      D     T  GPH++DL     D ++   + S G+ K+++  + +  
Sbjct: 230 EAELSELLIQSFTRDVKQGFTSFGPHKADLTFSVND-SLVENYFSRGQLKLLIYALKVTQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             +I   T    ILL+D++S+ L  D R  + +++    SQIF+T  +     ++ E  K
Sbjct: 289 NYIIEAETQKQSILLIDDLSSELSIDTRKDVGQLLAQCNSQIFITAIESESISAVLEPMK 348

Query: 364 ----FMRISNHQAL 373
                  + + + +
Sbjct: 349 RKLEMFHVKHGKLI 362


>gi|25026560|ref|NP_736614.1| recombination protein F [Corynebacterium efficiens YS-314]
 gi|259508308|ref|ZP_05751208.1| RecF protein [Corynebacterium efficiens YS-314]
 gi|51316473|sp|Q8FUL4|RECF_COREF RecName: Full=DNA replication and repair protein recF
 gi|23491839|dbj|BAC16814.1| putative DNA replication and repair protein RecF [Corynebacterium
           efficiens YS-314]
 gi|259164126|gb|EEW48680.1| RecF protein [Corynebacterium efficiens YS-314]
          Length = 398

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 93/377 (24%), Positives = 161/377 (42%), Gaps = 27/377 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L + +FR++  L++      TIF+G NG GKTNI+EAI +L+     R ++ A +
Sbjct: 1   MYIRSLELRDFRSWPELKVELKPGITIFIGRNGFGKTNIVEAIGYLAHLSSHRVSTDAPL 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R  +  +  S  A  +G E  A + IK       +    QIN   ++   EL   ++  
Sbjct: 61  VRANAGDARISAVAVNQGRELAAHLLIK-----PHAANQGQINRTRVKSPRELLGVIKTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174
              P    +  G   ERRR+LD ++    PR      D++++++ RN LL          
Sbjct: 116 LFAPEDLALVRGEPAERRRYLDDIIATRRPRMAGVKADYDKVLKQRNALLKTATIALRRG 175

Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228
               EG    +   + + Q+A LG ++  AR  ++  LSS I +  Q          ++ 
Sbjct: 176 YGTEEGAAALATLDTWDGQLARLGAEVMAARFALVQDLSSQIRDAYQTIAPESRPAAVNY 235

Query: 229 TGFLDGKFDQ----SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
              +D    Q        ++     +L   R+ +     +L+GPHR DL + +       
Sbjct: 236 KTTIDQGLAQFGEFDAGIIEATLLTELAAKRQREIERGMSLVGPHRDDLEL-HLGGQPAK 294

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
              S GE     + + +A   L+  + G  PIL+LD++ + LD  +R  L  I  D    
Sbjct: 295 GFASHGETWSFALSMRIAEFNLL-RSDGTDPILILDDVFSELDAGRREKLVGIARDAEQV 353

Query: 345 IFMTGTDKSVFDSLNET 361
           I        +  +L + 
Sbjct: 354 IITAAVSDDLPANLADA 370


>gi|323137241|ref|ZP_08072320.1| DNA replication and repair protein RecF [Methylocystis sp. ATCC
           49242]
 gi|322397599|gb|EFY00122.1| DNA replication and repair protein RecF [Methylocystis sp. ATCC
           49242]
          Length = 391

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 134/367 (36%), Positives = 206/367 (56%), Gaps = 5/367 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +S+FR+YA  R   +A+     G+NG GKTN+LEA+S  SPGRG RRA  A+  R
Sbjct: 26  VRRLTLSDFRSYAQARCDIEARLVALSGENGAGKTNVLEALSMFSPGRGLRRAELAECAR 85

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 F+    +E       +   L    +   R  +I+   I        H+R+ WL 
Sbjct: 86  RDGAGGFAVSIEIEIGGVTTQLGHGLTEDGE---RRFRIDRAPIGSARAFADHIRVLWLT 142

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P+MD +F+G + ERRRFLDR+   +D  H  R+   ER +R RNRLL EG  D  W  + 
Sbjct: 143 PAMDGLFAGPAGERRRFLDRLALGVDADHGARVNRLERALRNRNRLLEEGVSDRRWLDAA 202

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-ALKE 245
           E ++A +GV    AR E ++ LS+LI     +  FP  ++++ G ++    ++   A+++
Sbjct: 203 EQEIASIGVAAAAARRETVSRLSALIAS-GGESPFPWAEIAIQGEIETMLAEAPALAVED 261

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            + + L   R+ D+ + RTL GP  SDL V +  K       STGEQK +L+G+ LAHAR
Sbjct: 262 RFREMLAATRRRDAAAGRTLTGPQTSDLAVRHGPKNEAARDCSTGEQKALLMGLTLAHAR 321

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L++  T  AP+LLLDE++AH D  +R ALF  +  +G Q++MTG D  +F SL   A+ +
Sbjct: 322 LVTAMTRKAPLLLLDEVAAHFDVKRREALFDELESLGGQVWMTGADPLLFASLQGRAEML 381

Query: 366 RISNHQA 372
           +++  + 
Sbjct: 382 QVTPGRI 388


>gi|332291116|ref|YP_004429725.1| DNA replication and repair protein RecF [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169202|gb|AEE18457.1| DNA replication and repair protein RecF [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 363

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 163/377 (43%), Gaps = 24/377 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N+ S    FDA+   FVG+NGVGKTNIL+AI  LS G+ +     +  
Sbjct: 1   MILKSLSLINYKNFESKDFTFDAKINCFVGNNGVGKTNILDAIYHLSFGKSYFNPVTSQN 60

Query: 65  TRIGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               +  F        +G +    +S K       S + ++ N  +     +    L + 
Sbjct: 61  INHDADFFVVNGVYEKDGRDEKVVVSAK-----KGSKKVIKRNAKIYERFADHIGFLPLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179
            + P+   + +  S  RR+F+D ++   D  +   ++ + +++  RN LL        F+
Sbjct: 116 IISPADRDLITEGSDTRRKFIDGVISQSDKSYLSNLLGYSKILAQRNALLKYFAANSTFN 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
           +   +    Q+   G  I   R + +   + +  E  +  +     ++LT         S
Sbjct: 176 ADTLAVYNEQLEGFGTPIFEKRKQFLERFAPIFNERYKAISGGTEHVTLTYSSTL----S 231

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              LK      L      D   + T +G H+ DL  +     +    GS G+QK  L+ +
Sbjct: 232 DMPLKHSLTNALA----KDRSLQYTSVGIHKDDLQFEINGHPVK-KFGSQGQQKSYLIAL 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTD----KSV 354
            LA    I   +G  P+LLLD+I   LDE +   +  +V T+   Q+F++ T     +SV
Sbjct: 287 KLAQFDFIKQESGTTPLLLLDDIFDKLDESRVQHIIELVNTNDFGQLFISDTHPERTESV 346

Query: 355 FDSLNETAKFMRISNHQ 371
             +++++ +   +   Q
Sbjct: 347 VKNIHQSYELFHLERAQ 363


>gi|256842142|ref|ZP_05547647.1| DNA replication and repair protein recF [Parabacteroides sp. D13]
 gi|256736458|gb|EEU49787.1| DNA replication and repair protein recF [Parabacteroides sp. D13]
          Length = 365

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 158/375 (42%), Gaps = 22/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N     ++F  +   F G+NG+GKTN+L+AI +LS  +       + +
Sbjct: 1   MILKKLSVLNYKNILQSEVIFSPKMNCFFGNNGMGKTNLLDAIHYLSFCKSHVNTPDSQI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                          +      +I   +  R  +     + N      + E    L +  
Sbjct: 61  INSDQD-LCVVQGNYDYEGREEEIFCAMRRRQRK---QFKRNKKEYDKLSEHIGLLPLVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P+   +  G S ERRRFLD ++   D  +   +I + + +  RN LL +   D+S   
Sbjct: 117 VSPADADLIRGGSDERRRFLDLIISQQDKPYLHALIQYNKALLQRNTLLKDQSMDASLYE 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCA 242
            +E Q+   G  +   R +++   + +  EY Q    +   + L     L+         
Sbjct: 177 VLEMQLGMYGQIVYEKRKKLVEDFTPIFNEYYQTICGSAEEVGLHYISQLE--------- 227

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            + E A KL   R+ D +   T  G H+ +L +    + +    GS G+ K  L+ + LA
Sbjct: 228 -ETELAGKLAMSRERDRILGYTSSGIHKDELEMTL-GRYLIRRVGSQGQNKTYLIALKLA 285

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL--- 358
               ++      PILLLD+I   LD  +   + ++V++ G  QIF+T T++   D +   
Sbjct: 286 QFAFLNKRGQTTPILLLDDIFDKLDASRVEQIIKLVSENGFGQIFITDTNRKYLDEILLA 345

Query: 359 -NETAKFMRISNHQA 372
            N      R+   + 
Sbjct: 346 MNHDYALFRVERGEV 360


>gi|39995113|ref|NP_951064.1| recombination protein F [Geobacter sulfurreducens PCA]
 gi|81703762|sp|Q74H90|RECF_GEOSL RecName: Full=DNA replication and repair protein recF
 gi|39981875|gb|AAR33337.1| recF protein [Geobacter sulfurreducens PCA]
 gi|307634642|gb|ADI82866.2| DNA replication and repair protein RecF [Geobacter sulfurreducens
           KN400]
          Length = 365

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 159/374 (42%), Gaps = 12/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + IS FRN   + + FD +  +  G NG GKT++LEAI  L   + FR A   D+
Sbjct: 1   MHLNAIAISAFRNIDHVEISFDRRFNVLHGANGQGKTSVLEAIYLLGTMKSFRMAKAHDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +P      + V G    A +  ++     R  R  +I+   +  + +    +    
Sbjct: 61  IAWNAP-----HSLVRGDIDKAGVRREIALYLGREGRKARIDRKPVTKLADFFGAVNAVV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RRR+LDR +F  D  +     ++ RL++ RN LL  G  D     
Sbjct: 116 FSPEEIGMARGGPELRRRYLDRAIFNGDLGYLLLHHEYHRLLKQRNALLRRGERDG--LE 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               Q+AE G ++ + R   ++ +  L+ ++ +       ++ L     G          
Sbjct: 174 VWTIQLAEAGARLMVKRRAYLSQIEPLVRQFYRDIAGAGQEVGLAYRCHGLASAEGERDC 233

Query: 245 EEYAKKLFDGRKMDS-MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
               ++L    + +      T +GPHR D+     +  +   HGS GEQ+  ++ + +A 
Sbjct: 234 AAALRELMAAHEAEELRRGATGVGPHRDDVDF-ILNGRVIRHHGSQGEQRSFVLAVKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV--FDSLNET 361
              +    G  P+LLLD+IS+ LD ++   L   +     Q+F+T TD S    + ++  
Sbjct: 293 IEYLERLNGAPPVLLLDDISSELDPERNANLMTFLRGKRMQVFITTTDVSTLRLEGIDTH 352

Query: 362 AKFMRISNHQALCI 375
           A   R+S      +
Sbjct: 353 AS-FRVSRGTVTPV 365


>gi|262193329|ref|YP_003264538.1| DNA replication and repair protein RecF [Haliangium ochraceum DSM
           14365]
 gi|262076676|gb|ACY12645.1| DNA replication and repair protein RecF [Haliangium ochraceum DSM
           14365]
          Length = 382

 Score =  286 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 91/382 (23%), Positives = 160/382 (41%), Gaps = 23/382 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +   RN A L L    +  +F GDNG GKTN+LE I  +   R FR    A++
Sbjct: 1   MLVRALKLEGIRNLAPLTLTPGPRFNVFHGDNGQGKTNLLETIYVVGALRSFRTQRLAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +F    A +        +    E    +  R ++++   +R + +      +  
Sbjct: 61  I-----AFERDRAYIGARIQRGGLERVYELVQRQRGRQVRLDGKAVRPISKYFGDFNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------Y 177
             P   ++  G   ERRRFLDR VF   PR+   +  ++++++ RN LL E         
Sbjct: 116 FAPEDLQVPRGSPAERRRFLDRAVFNRSPRYLGEVQAYDKVVKNRNALLRELGSGKRSLR 175

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDG- 234
               + +  + Q+AELG  +   RV  ++ +     E  Q        + +S    +D  
Sbjct: 176 QAGDFLAVFDQQLAELGALLMRYRVHFLDEIRPRFQEAFQSITHTGLAVDVSYASAVDIT 235

Query: 235 ------KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                 +       L    A  + + R  D     + +GPHR DL+ +  D     A  S
Sbjct: 236 QASDSAESGPGSEQLTRALAAAIAERRPRDLARGSSSVGPHRDDLVFEL-DGHPAAAFAS 294

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+ + +++    A  +L+++T G  P+LLLD++S+ LD  +   LF  +     Q F+T
Sbjct: 295 QGQLRALVLAWKTAEMQLLAHTHGEEPVLLLDDVSSELDATRNGYLFEFLKARRGQCFIT 354

Query: 349 GTDKSVFDSLNETAKFMRISNH 370
            T       L+   +  R+   
Sbjct: 355 TTHPRHV-LLSSEREDYRVEGG 375


>gi|227506185|ref|ZP_03936234.1| recombination protein F [Corynebacterium striatum ATCC 6940]
 gi|227197209|gb|EEI77257.1| recombination protein F [Corynebacterium striatum ATCC 6940]
          Length = 392

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 166/380 (43%), Gaps = 27/380 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L++ +FR++  L +      T+FVG NG GKTNI+EAI +++     R +  A +
Sbjct: 1   MFIRELDVRDFRSWPELSIELGPGITLFVGRNGYGKTNIVEAIGYVAHLSSHRVSHDAPL 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R  +  +  ST A  +G E  A + IK       +    QIN   ++   EL   ++  
Sbjct: 61  VRQSAVNARISTTAVNQGRELTAHLLIK-----PHAANQAQINRTRLKSPRELLGVVKSV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176
              P    +  G   ERR +LD ++ +  PR      D++++++ RN LL         G
Sbjct: 116 LFSPEDLAVVRGEPAERRTYLDNIIASRTPRLAGVKADYDKVLKQRNALLKSASSSLRRG 175

Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228
           Y DS      +     +AQ+A LG ++  AR+ +++ALS LI               +  
Sbjct: 176 YGDSDGASALATLDVWDAQLARLGAQVIEARLALVDALSELIPSAYAGLAPESRPAHIEY 235

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
              +D    +   A+      +L   R+ +     +L+GPHR DL+++   +       S
Sbjct: 236 KSTIDVSDREVLEAV---MLTELAAKRQREIERGISLVGPHRDDLVLNLGTQPAK-GFAS 291

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+    G  PIL+LD++ A LD  +R  L  +  +   Q+ +T
Sbjct: 292 HGETWSYAISLRLAEFNLLRQ-DGTDPILILDDVFAELDAKRREKLVHLAAEAE-QVLIT 349

Query: 349 GTDKSVFDSLNETAKFMRIS 368
                      E      ++
Sbjct: 350 AAVDEDLPGNLEPIVRYEVT 369


>gi|262200049|ref|YP_003271257.1| DNA replication and repair protein RecF [Gordonia bronchialis DSM
           43247]
 gi|262083396|gb|ACY19364.1| DNA replication and repair protein RecF [Gordonia bronchialis DSM
           43247]
          Length = 397

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 96/378 (25%), Positives = 158/378 (41%), Gaps = 29/378 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++ +FR++ +  L   A+ T+F G NG GKTNILEA+ +L+  R  R ++ A +
Sbjct: 1   MFVRELHLRDFRSWRTADLELAAEPTVFTGRNGFGKTNILEALQYLATLRSHRVSTDAPL 60

Query: 65  TRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              G+ S   T      G E  A + I  E           IN+   R   E+   LR  
Sbjct: 61  VHSGATSALVTATVENSGRELTAQLRINAE-----GANKASINNGPPRRAREVIGILRTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176
              P    +  G   +RRRF+D +V    P H     D++R++R R  LL         G
Sbjct: 116 LFAPEDLSLVRGDPTDRRRFIDELVAQRGPLHVAARSDYDRVLRQRAALLKTAGAAMRRG 175

Query: 177 YFDS----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             D+    S     +AQ+AE G  +  ARV+++N L   + E       PH + +   +L
Sbjct: 176 GGDAASVISTLDVWDAQLAEHGAAVTAARVDVLNELRPHVTEAYASI-APHSRPTDLAYL 234

Query: 233 DGKFDQ---------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
                             A+ E    +L   R  +      L+GPHR D+ +   D  I 
Sbjct: 235 PAAGPDVLPPAGARADVAAIGETLLAQLAQVRTKEIERGVCLVGPHRDDVGIILGD-DIA 293

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
               S GE   + + + L     ++   G  P+++LD++ A LD  +R  L    +D   
Sbjct: 294 KGFASHGESWSLALALRLGSV-ALTRAEGVEPVIMLDDVFAELDATRRRKLATFTSDAEQ 352

Query: 344 QIFMTGTDKSVFDSLNET 361
            +      + + D +   
Sbjct: 353 LLVTAAVAEDIPDEIGGR 370


>gi|108796985|ref|YP_637182.1| recombination protein F [Mycobacterium sp. MCS]
 gi|119866069|ref|YP_936021.1| recombination protein F [Mycobacterium sp. KMS]
 gi|123369971|sp|Q1BG58|RECF_MYCSS RecName: Full=DNA replication and repair protein recF
 gi|166220717|sp|A1U8S3|RECF_MYCSK RecName: Full=DNA replication and repair protein recF
 gi|108767404|gb|ABG06126.1| DNA replication and repair protein RecF [Mycobacterium sp. MCS]
 gi|119692158|gb|ABL89231.1| DNA replication and repair protein RecF [Mycobacterium sp. KMS]
          Length = 380

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 164/376 (43%), Gaps = 18/376 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR++A   L  +   T+FVG NG GKTN++EA+ + +     R AS A +
Sbjct: 1   MFVRHLTLTDFRSWARADLELEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+P    +   V       ++++ LE    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRVGAPRAVVSTIVVNEG---RELAVDLEITTGRANKA-RLNRSPVRSPREVLGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179
             P    +  G   ERRR+LD +     P       D++R++R R  LL          D
Sbjct: 117 FAPEDLALVRGDPGERRRYLDELATTRRPSIAGVRADYDRVIRQRTALLKSAAGARYRGD 176

Query: 180 SS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234
            S        +  +A  G  +  AR ++++ L+  + +  Q          +     +D 
Sbjct: 177 RSVLETLDVWDGHLAAHGALLMAARADLVHHLAPEVEKAYQLLAPGSRPAAIRYRTSIDA 236

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           + D S    +      +   R  +      L+GPHR DL +   D+ +   + S GE   
Sbjct: 237 EDDVSAEYYEAALLDAMTRRRDAELERGVCLVGPHRDDLELRLGDQ-MAKGYASHGESWS 295

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
           + + + LA   L+  T G  P+LLLD++ A LD  +R AL   V     Q+ +T    + 
Sbjct: 296 MALSLRLAAYELL-RTDGSDPVLLLDDVFAELDAARRRALAE-VAASAEQVLVTAAVAED 353

Query: 354 VFDSLNETAKFMRISN 369
           +    +     +R+ +
Sbjct: 354 IPADWDARRIMIRMQD 369


>gi|299148571|ref|ZP_07041633.1| RecF protein [Bacteroides sp. 3_1_23]
 gi|298513332|gb|EFI37219.1| RecF protein [Bacteroides sp. 3_1_23]
          Length = 372

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 150/375 (40%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   +I   ++ R  +  +    N        +    L + 
Sbjct: 61  IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL      +   
Sbjct: 117 MVSPADSELIAGGSEERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFSVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  MA+ G  +   R   I     +   +    +     + L+     +       
Sbjct: 177 FLVWEEMMAQAGAIVFQKREAFIREFIPIFQSFYSFISQDKEVVGLSYESHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L   R+ D +   +L G H+ +L +   +  I    GS G+ K  LV + LA
Sbjct: 231 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGWTVPLLLLDDIFDKLDASRVEQIVKLVAGDNFGQIFITDTNRGHLDRILHK 347

Query: 359 -NETAKFMRISNHQA 372
                K  R+     
Sbjct: 348 VGSDYKIFRVEEGTI 362


>gi|323703939|ref|ZP_08115569.1| DNA replication and repair protein RecF [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531097|gb|EGB21006.1| DNA replication and repair protein RecF [Desulfotomaculum
           nigrificans DSM 574]
          Length = 367

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 80/372 (21%), Positives = 153/372 (41%), Gaps = 15/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + ++ FRNYA +         I  G N  GKTN+LE+I +   G  FR     DV
Sbjct: 1   MRVENITLNNFRNYAKVSFKPHPSINIITGHNAQGKTNLLESIYYSLKGHSFRADRDRDV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    +     A +     ++     ++     S +  ++N   +   +       +  
Sbjct: 61  IKWQQET-----AVINTEIMVSSRQFLIQWLIKASGKKFRLNGTEVPRAE--LDQFGVVL 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    +  G   ERRRFLD  V  + P +      + R++  RN LL E      +  
Sbjct: 114 FCPEDLYLVKGSPQERRRFLDLEVGPLHPGYSHACRQYARVLSQRNILLKEIRGRQANPD 173

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + Q+   G ++   R++++  L  +      +      +L          D SF 
Sbjct: 174 ILDIWDEQLYRHGARVIFLRLQVLKKLIPVARSIHLELTNGLEQLQAKYLSSLVLDLSFS 233

Query: 242 A--LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              + + +++     RK++    +TL+GPHR D+ +   + A     GS G+Q+ V + +
Sbjct: 234 EEQIYQVFSQAAKQIRKLEIDRCQTLLGPHRDDISLAI-NGAEAKTFGSQGQQRTVTLSL 292

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358
            L+   L     G  P+LLLD++   LD +++  L   + D   Q F+T +     D+ +
Sbjct: 293 KLSVLELWYREFGHYPVLLLDDVLFELDHNRQTMLLDKLQDK-VQTFITTSFPGGIDNQI 351

Query: 359 NETAKFMRISNH 370
            +  +  R+   
Sbjct: 352 KQVGQVWRVHAG 363


>gi|126432617|ref|YP_001068308.1| recombination protein F [Mycobacterium sp. JLS]
 gi|166220716|sp|A3PSE0|RECF_MYCSJ RecName: Full=DNA replication and repair protein recF
 gi|126232417|gb|ABN95817.1| DNA replication and repair protein RecF [Mycobacterium sp. JLS]
          Length = 380

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 163/376 (43%), Gaps = 18/376 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR++A   L  +   T+FVG NG GKTN++EA+ + +     R AS A +
Sbjct: 1   MFVRHLTLTDFRSWARADLELEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+P    +   V       ++++ LE    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGAPRAVVSTIVVNEG---RELAVDLEITTGRANKA-RLNRSPVRSPREVLGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179
             P    +  G   ERRR+LD +     P       D++R++R R  LL          D
Sbjct: 117 FAPEDLALVRGDPGERRRYLDELATTRRPSIAGVRADYDRVIRQRTALLKSAAGARYRGD 176

Query: 180 SS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234
            S        +  +A  G  +  AR ++++ L+  + +  Q          +     +D 
Sbjct: 177 RSVLETLDVWDGHLAAHGALLMAARADLVHHLAPEVEKAYQLLAPGSRPAAIRYRTSIDA 236

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           + D S    +      +   R  +      L+GPHR DL +   D+ +   + S GE   
Sbjct: 237 EDDVSAEYYEAALLDAMTRRRDAELERGVCLVGPHRDDLELRLGDQ-MAKGYASHGESWS 295

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
           + + + LA   L+  T G  P+LLLD++ A LD  +R AL   V     Q+ +T    + 
Sbjct: 296 MALSLRLAAYELL-RTDGSDPVLLLDDVFAELDAARRRALAE-VAASAEQVLVTAAVAED 353

Query: 354 VFDSLNETAKFMRISN 369
           +    +     +R+ +
Sbjct: 354 IPADWDARRIVIRMQD 369


>gi|219871719|ref|YP_002476094.1| recombination protein F [Haemophilus parasuis SH0165]
 gi|254790479|sp|B8F744|RECF_HAEPS RecName: Full=DNA replication and repair protein recF
 gi|219691923|gb|ACL33146.1| DNA replication and repair protein RecF [Haemophilus parasuis
           SH0165]
          Length = 361

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 161/371 (43%), Gaps = 18/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN  ++ L  +     F+G NG GKT++LEAI +L  G+ F+      +
Sbjct: 1   MSLSRLIINNFRNLTAVDLELNHGFNFFIGANGSGKTSLLEAIFYLGHGKSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F + F +++  E   + S+ L+ ++ +    L+IN    + + +L   L +  
Sbjct: 61  IKYNQEEF-TLFGKIQ--EEKHECSVGLQ-KNRQGETILRINGESNKKIADLAYLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G  + RR FLD  +F  +          +RL++ RN  L +    +    
Sbjct: 117 ITPEGLTLLNGGPIYRRAFLDWGLFHQNTDFYHNWNSLKRLLKQRNAALVQTRHYNE-LK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++++    ++ +R   + ++ + I +  Q    P ++++ T +   + ++      
Sbjct: 176 PWDVELSKFAQIVSQSRAVYVESILTYIEKNCQ-FFLPELEITATFYQGWEKER------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L  G + D     T++GP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -DYADLLAQGFERDRSVGYTMVGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL----NE 360
                      I L+D+ ++ LD  K   L   +   GSQ+F+T   +     +     +
Sbjct: 287 EYFIAQKNRQCIFLIDDFASELDTQKCELLADRLYQSGSQVFVTAITQEQLKPIQGKRQD 346

Query: 361 TAKFMRISNHQ 371
            A    I + +
Sbjct: 347 NATSFFIKDGK 357


>gi|72160410|ref|YP_288067.1| recombination protein F [Thermobifida fusca YX]
 gi|97181072|sp|Q47U20|RECF_THEFY RecName: Full=DNA replication and repair protein recF
 gi|71914142|gb|AAZ54044.1| DNA replication and repair protein RecF [Thermobifida fusca YX]
          Length = 377

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 158/381 (41%), Gaps = 21/381 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L ++++R+Y +  L  +   + F+G NG GKTN++EAI +++     R A  A +
Sbjct: 1   MHVSHLQLADYRSYEAAYLELEPGVSTFIGPNGQGKTNLVEAIGYVATHSSHRVAHDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       A V          I+LE    R+ R  ++N      + ++   L    
Sbjct: 61  VRRGAQRAVIRAAVV---RHGQTALIELEINPGRANRA-RLNRSPNTRMRDVLGILHTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------E 175
             P    +  G   ERRRFLD ++ A  PR+     D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARAPRYAGVRSDYERVLKQRNALLKSAAAQNLHHR 176

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
           G  D       +  +A++G ++  AR+ ++  L  L  +   +       +SL       
Sbjct: 177 GGRDLPTLDVWDEHLAQIGAELLAARLALVAELQPLAAKAYGELTATQDPISLRYRCSAT 236

Query: 236 FDQ----SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
            ++    +   L E     L   R  +     +L+GPHR DL +   D      + S GE
Sbjct: 237 DEELDTTNRPQLVEILRAALLRARPDELRRGVSLVGPHRDDLQLWLNDLPAK-GYASQGE 295

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
                + + LA   L+    G  P+LLLD++ A LD ++R  L   V     Q+ +T   
Sbjct: 296 SWSYALALRLAGFELL-RADGDDPVLLLDDVFAELDAERRRRLASYVRTAE-QVLVTAAV 353

Query: 352 KSVFDSLNETAKFMRISNHQA 372
                     A+  R++    
Sbjct: 354 PDDVPQELSGAR-FRVTGGSV 373


>gi|294647035|ref|ZP_06724648.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CC
           2a]
 gi|294809889|ref|ZP_06768565.1| DNA replication and repair protein RecF [Bacteroides xylanisolvens
           SD CC 1b]
 gi|292637612|gb|EFF56017.1| DNA replication and repair protein RecF [Bacteroides ovatus SD CC
           2a]
 gi|294442918|gb|EFG11709.1| DNA replication and repair protein RecF [Bacteroides xylanisolvens
           SD CC 1b]
          Length = 375

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 150/375 (40%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 4   MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 63

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   +I   ++ R  +  +    N        +    L + 
Sbjct: 64  IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 119

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL      +   
Sbjct: 120 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALVQRNTLLKSEFPVEEEL 179

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  M++ G  +   R   I     +   +    +     + L+     +       
Sbjct: 180 FLVWEEMMSQAGEIVFRKREAFIREFIPIFQSFYSFISQDKEAVGLSYESHARD------ 233

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L   R+ D +   +L G H+ +L +   +  I    GS G+ K  LV + LA
Sbjct: 234 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 291 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVGGDNFGQIFITDTNRGHLDRILHK 350

Query: 359 -NETAKFMRISNHQA 372
                K  R+     
Sbjct: 351 VGSDYKIFRVEEGTI 365


>gi|240950077|ref|ZP_04754379.1| recombination protein F [Actinobacillus minor NM305]
 gi|240295452|gb|EER46207.1| recombination protein F [Actinobacillus minor NM305]
          Length = 361

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/370 (19%), Positives = 156/370 (42%), Gaps = 18/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FRN  ++ L    Q    +G NG GKT++LE+I +L  GR F+      +
Sbjct: 1   MPLSRLIVQNFRNLQAVDLTLSPQFNFIIGANGSGKTSLLESIFYLGHGRSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +   F    ++E  +    + I+ +   + +   L+IN      + +L + L +  
Sbjct: 61  IHHDAD-HFVLHGKIEETQHSWSVGIQKQRSGETT---LKINGEDGNKIADLAQLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR FLD  +F          ++ +RL++ RN  L +         
Sbjct: 117 ITPEGLTLLNDGPSYRRAFLDWGLFHQHTEFYNDWVNLKRLLKQRNAALHQVRSYFE-LK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++ +L  K++  R   + A+   I +   +   P +++ ++ +   +         
Sbjct: 176 AWDIELVKLAEKVSQMRAAYVEAILPEIDKTC-RFFLPELEIQMSFYQGWER-------G 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L  G + D     T++GP ++DL +      +     S G+ K+++  + LA  
Sbjct: 228 ADYADILAQGFERDQSLGYTMMGPQKADLRIKANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL----NE 360
             +        + L+D+ ++ LD  KR  L + + +  SQ+F+T   K   + +    ++
Sbjct: 287 EFLMTQKARQCLFLVDDFASELDPTKRELLSQRLRESHSQVFVTAITKEQLNQMQWQEHQ 346

Query: 361 TAKFMRISNH 370
           T     +   
Sbjct: 347 TDLSFEVKEG 356


>gi|330444455|ref|YP_004377441.1| DNA replication and repair protein recF [Chlamydophila pecorum E58]
 gi|328807565|gb|AEB41738.1| DNA replication and repair protein recF [Chlamydophila pecorum E58]
          Length = 358

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/365 (23%), Positives = 154/365 (42%), Gaps = 11/365 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L +  FR+Y    + F  +     G N  GKTN+LEA+  LS GR FR    ++ 
Sbjct: 1   MKIVSLTLKNFRSYKDTEVSFAPRVNYISGSNAQGKTNLLEALYILSLGRSFRTQHLSEA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+  FF   A           S  L    D+  + L  ++  ++ + E+   + +  
Sbjct: 61  IAFGASYFFLKIA-----FEKFSCSHTLSIYVDKYGKKLLFDNAPVKTLSEMIGKVPMVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  + SG   +RR FL+ ++   DP +   +  +++ +  RN LL     +++  S
Sbjct: 116 FSSKDRLLISGAPADRRLFLNLLLSQCDPYYTHTLSYYQQALLQRNALLK--TKNTATIS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               Q+A+LG  I   R    + L+ L+          H+ L     L          L 
Sbjct: 174 VWNEQLAKLGGYITFQRYTCCDKLNVLMQSLWSNPLKEHLLLKFKSSLIKTPAPKEEELS 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +E  K+L      D   + T +GPHR D  +   ++       S G++   L  + LA +
Sbjct: 234 QELLKQLLHSLPRDLELKSTSVGPHREDFTLMM-NQEPASTFASEGQKHSFLTILRLAES 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             + +    +P++ +D++ A LD  + + L ++  + G Q  +T T      +L E +K 
Sbjct: 293 LYLQHHHNLSPLVCIDDLHASLDSQRASQLLQLAPNFG-QTLITST--QPLYTLPENSKS 349

Query: 365 MRISN 369
           + I N
Sbjct: 350 LHIKN 354


>gi|220915126|ref|YP_002490430.1| DNA replication and repair protein RecF [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|254790458|sp|B8J6Y3|RECF_ANAD2 RecName: Full=DNA replication and repair protein recF
 gi|219952980|gb|ACL63364.1| DNA replication and repair protein RecF [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 372

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 161/370 (43%), Gaps = 9/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L++ +FRN A++ L    + T+ +G+NG GKTN+LEAI FL+  +  R    A++
Sbjct: 1   MKLLSLHVQDFRNLAAVELAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+    +     EG  G+  +++++      +    +      R +D+  + L    
Sbjct: 61  VRFGAEQG-AVAGDFEGPGGVRRVAVQVAAGGRTATLDGKALGSGAR-LDDYFEGLASVC 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +       RRRFLDR  F   P       ++ R +R RN  L  G  +    +
Sbjct: 119 FSPDDLLLVKAGPDGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRAGPAEVE--A 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSFC 241
           S    +   G +I + R +++  L+  +     + +    P   L+         +    
Sbjct: 177 SFREPLVRAGARILVRRRDLVAELAPRLQAAFAEISGPAAPEAHLAYRAAGGVDVEHPEA 236

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +    A  L    + D     T  GPH  DL++    K   + +GS G+Q+ +++ + +
Sbjct: 237 EVAARLAHALEARLERDREKGFTSAGPHMDDLVLALGGKGARL-YGSQGQQRALVLALKI 295

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNE 360
           A    +    G  P+LLLD++S+ LD  K   L   +  + +Q F+T TD+ + + +   
Sbjct: 296 AEIENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTSTDRRLIEPAAGP 355

Query: 361 TAKFMRISNH 370
              F  + + 
Sbjct: 356 DTAFFEVRSG 365


>gi|319954276|ref|YP_004165543.1| DNA replication and repair protein recf [Cellulophaga algicola DSM
           14237]
 gi|319422936|gb|ADV50045.1| DNA replication and repair protein recF [Cellulophaga algicola DSM
           14237]
          Length = 361

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 163/372 (43%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N++S    FD++   FVG NG+GKTNIL+AI  LS G+ +        
Sbjct: 1   MFLKKLSLINYKNFSSENFDFDSKINCFVGQNGIGKTNILDAIYHLSFGKSYFNPIATQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G   FF      E ++    I   L+    +    ++ N      + +    L +  
Sbjct: 61  IKHGED-FFVIEGNFEKLDREEKIVCSLKKGMKK---IIKKNGKAYDKLSDHIGFLPLVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + PS   + +  S  RR+F+D ++   D  + + ++ + +++  RN LL        FD 
Sbjct: 117 ISPSDRDLITEGSDTRRKFIDGVISQSDKDYLQTLLKYNKILSQRNSLLKYFAVNHTFDK 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +  S    Q+   G  I   RV  +     +  E  Q  +  + ++SL            
Sbjct: 177 TNLSVYNEQLTTYGTVIFNKRVAFLETFIPIFKEQYQVISGGNEEVSLIYDSKILETNLL 236

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L            + D   + T +G H+ DL  D  +  I    GS G+QK  L+ + 
Sbjct: 237 ELL--------EKNIEKDRAIQYTSVGIHKDDLNFDLGEHPIK-KFGSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVF 355
           LA    I   +   PILLLD+I   LDE++ + +  +V D    Q+F++ T     ++V 
Sbjct: 288 LAQFHFIKEQSSTTPILLLDDIFDKLDENRVSHIISLVNDENFGQLFISDTHADRTENVI 347

Query: 356 DSLNETAKFMRI 367
            +++++ K  ++
Sbjct: 348 KNIHQSYKMFKL 359


>gi|51316249|sp|Q6YI30|RECF_SODGL RecName: Full=DNA replication and repair protein recF
 gi|37359208|gb|AAN73890.1| DNA recombinase F [Sodalis glossinidius]
          Length = 364

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 148/370 (40%), Gaps = 14/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN +   L   A     VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALSRLMIRDFRNISVADLSLAADFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQSGRV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R   P F     R+E G       S+ L  R+      ++I+      V EL + L + 
Sbjct: 61  IRHEQPEF-VLHGRIEAGNVDARATSVGLS-RNRLGDSTVRIDGSDGHKVAELAQLLPMQ 118

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +G    RR F+D   F  +P       +  RL++ RN  L +        
Sbjct: 119 LITPEGFTLLNGGPKYRRAFMDWGCFHNEPGFFTAWSNLRRLLKQRNAALRQ-VSRYQQL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + ++  L  +I+  R +  +A  +  +     +  P  +L  +       +      
Sbjct: 178 RVWDQELIPLANRISEWRADY-SAAIAADITATCAQFLPEFRLDFSFQRGWDKES----- 231

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             ++ + L    + D     T  GPH++D  +      +     S G+ K+++  + LA 
Sbjct: 232 --DFGELLERQFERDRALTYTASGPHKADFRIRAEGVPVEDIL-SRGQLKLLMCALRLAQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETA 362
              +++  G   + L+D+ ++ LD  +R  L   +    +Q+F++         + +E  
Sbjct: 289 GEFLTHRNGRRCLYLIDDFASELDTGRRRLLAERLKATHAQVFVSAVSADQIRDIPDEKG 348

Query: 363 KFMRISNHQA 372
           K  ++   + 
Sbjct: 349 KMFKVEQGKI 358


>gi|309807875|ref|ZP_07701807.1| putative recombination protein F [Lactobacillus iners LactinV
           01V1-a]
 gi|308168977|gb|EFO71063.1| putative recombination protein F [Lactobacillus iners LactinV
           01V1-a]
          Length = 347

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 144/341 (42%), Gaps = 13/341 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++
Sbjct: 1   MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +          A + G     +I   L+       +   IN +  + +      +    
Sbjct: 61  IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D 
Sbjct: 116 FSPEDLSLIKGSPAFRRRFMDLEFGQINAEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237
            + + +  Q+A L  ++   RV  ++ L     +     +     L +     F +    
Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQKEILDIEYKASFPEFDEK 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   + ++        +  +     TL+GPHR DL V + +K     + S G+Q+ +++
Sbjct: 236 DSVEKIYKKILLSFEHVKVNEMRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            I LA   L+       PILLLD++ + LD  ++     I+
Sbjct: 295 SIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKIYLIIL 335


>gi|258650275|ref|YP_003199431.1| DNA replication and repair protein RecF [Nakamurella multipartita
           DSM 44233]
 gi|258553500|gb|ACV76442.1| DNA replication and repair protein RecF [Nakamurella multipartita
           DSM 44233]
          Length = 380

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 83/363 (22%), Positives = 146/363 (40%), Gaps = 24/363 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR++ ++ +       + VG NG GKTN++EA+ +L+     R A+ A +
Sbjct: 1   MYVRHLALTDFRSWPAVDVPLQPGVNVLVGRNGTGKTNLMEALGYLATLGSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G        A V G     ++ +++E   DR     +IN   +    +L   LR   
Sbjct: 61  VRSGCTRSILRAAVVSGD---RELLLEMEIARDRRN-TARINRAPLTRPRDLLGVLRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179
             P    +  G   ERRRFLD ++    PR      D++R+++ RN LL          D
Sbjct: 117 FAPEDLALVRGDPTERRRFLDEVLMMRAPRLAGVKADYDRVLKQRNALLKTAGAARRTGD 176

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            S   + +  +   G ++  AR+ ++  L   +             + L           
Sbjct: 177 LSTLDAWDEHLVAAGAELIHARLALVAQLRPPVTAAYADVAGADQVVDLVYRSTVPLGPD 236

Query: 240 FCALKEEYA------------KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
             +     A             +L   R  +      L+GPHR DL +          + 
Sbjct: 237 PASAAGTIAVPDRAALAEAMLAELGRMRSKELERGICLVGPHRDDLEL-LLGTDPAKGYA 295

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE     + + LA   L+  + G  P+L+LD++ A LD  +R  L  +V     Q+ +
Sbjct: 296 SHGESWSFALALRLASFSLL-RSDGVDPVLILDDVFAELDAGRRGRLAELVAGAE-QVLI 353

Query: 348 TGT 350
           T  
Sbjct: 354 TAA 356


>gi|298481402|ref|ZP_06999594.1| RecF protein [Bacteroides sp. D22]
 gi|295086818|emb|CBK68341.1| DNA replication and repair protein RecF [Bacteroides xylanisolvens
           XB1A]
 gi|298272266|gb|EFI13835.1| RecF protein [Bacteroides sp. D22]
          Length = 372

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 150/375 (40%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   +I   ++ R  +  +    N        +    L + 
Sbjct: 61  IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL      +   
Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALAQRNTLLKSEFPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  M++ G  +   R   I     +   +    +     + L+     +       
Sbjct: 177 FLVWEEMMSQAGEIVFRKREAFIREFIPIFQSFYSFISQDKEAVGLSYESHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L   R+ D +   +L G H+ +L +   +  I    GS G+ K  LV + LA
Sbjct: 231 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVGGDNFGQIFITDTNRGHLDRILHK 347

Query: 359 -NETAKFMRISNHQA 372
                K  R+     
Sbjct: 348 VGSDYKIFRVEEGTI 362


>gi|315022216|gb|EFT35244.1| DNA replication and repair protein recF [Riemerella anatipestifer
           RA-YM]
 gi|325336656|gb|ADZ12930.1| Recombinational DNA repair ATPase (RecF pathway) [Riemerella
           anatipestifer RA-GD]
          Length = 380

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/373 (25%), Positives = 163/373 (43%), Gaps = 22/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L ++ F+N+      F ++   FVG+NGVGKTNIL+A+ +LS G+ F   S  + 
Sbjct: 21  MIIKKLYLTNFKNHQERVFDFSSEINSFVGNNGVGKTNILDALHYLSVGKSFLGNSDVNN 80

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G   FF+  A V+  E    + I    +   + + ++ ND     + +    L    
Sbjct: 81  ILTGED-FFTLEAVVDDGEKETILKI---IQSKDAKKLVKKNDKSYARLSDHIGFLPSVM 136

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180
           + P    + S     RRRFLD M+  +D  +   ++ +++ ++ RN LL       YFD 
Sbjct: 137 ISPYDANLISDSGESRRRFLDAMISQVDAEYLHSIMQYQKALKQRNALLKSFAKNRYFDK 196

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 +  + +    I   R   I  L    + +    +    ++ +    D +     
Sbjct: 197 DSLEIYDEPLCQYAGVIFEKRSLFITQLLPTFLHFYNMISNGKEEVDIVYQSDLE----- 251

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              ++  A+ L    + D +   T  G H+ +L  +     +    GS G+QK  L+ + 
Sbjct: 252 ---EQTMAEVLSQNVEKDRVLTYTSKGIHKDELRFEMSG-DLIKKIGSQGQQKSFLIALK 307

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS----VF 355
           LA    I   TG  P+LLLD+I   LD+ +   L  +V  +   QIF+T T K     V 
Sbjct: 308 LAQINRIKEITGKTPLLLLDDIFDKLDDRRVAQLIELVNKEHFGQIFITDTHKERTEAVV 367

Query: 356 DSLNETAKFMRIS 368
            ++NE ++   I+
Sbjct: 368 KNINEESRIFEIT 380


>gi|300780156|ref|ZP_07090012.1| recombination protein F [Corynebacterium genitalium ATCC 33030]
 gi|300534266|gb|EFK55325.1| recombination protein F [Corynebacterium genitalium ATCC 33030]
          Length = 392

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 99/381 (25%), Positives = 165/381 (43%), Gaps = 32/381 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++ +FR++  L L  +   T+F G NG GKTNI+EA  + +     R +    +
Sbjct: 1   MYLRELDLRDFRSWPELNLALEPGVTVFSGRNGHGKTNIVEAAIYTATLASHRVSQDQPL 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+ +   +   V  G E    + IK+     R     QIN   ++   E+   LR  
Sbjct: 61  IRTGANNARISATTVNAGRELTTHLLIKV-----REQNQAQINRTRLKSPREMLGVLRTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL-------LTEG 176
              P    + +G   ERRRFLD +     PR      D+++++R RN L       L  G
Sbjct: 116 VFAPEDLALVTGEPAERRRFLDTLASIRTPRFGGAKADYDKVLRQRNALLRSSNMALRRG 175

Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228
           Y D       S   + +AQ+A  G ++   R  +I+ LS  +               +  
Sbjct: 176 YNDDSGAAALSTLDAWDAQLAAFGAQVVAGRRMLIDVLSDPVHNSYSSVAPESRPAAIEY 235

Query: 229 TGFLD-------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           +  LD       G+       L+  + ++L   R+ +     TL+GPHR DL++   D+ 
Sbjct: 236 SSTLDKAVAELAGEPSNDPAILEAAFLQELARRRRDEIDRGTTLVGPHRDDLLLTLGDQP 295

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE     + + LA   L+S   G  P+L+LD++ A LD  +R  L   V   
Sbjct: 296 AK-GYASHGETWSFALALHLAEYALLSE-DGVDPVLILDDVFAELDAKRRERLV-AVAQQ 352

Query: 342 GSQIFMT-GTDKSVFDSLNET 361
             Q+ +T      + D+L+E 
Sbjct: 353 AEQVLITAAVGDDLPDNLDEH 373


>gi|116668572|ref|YP_829505.1| recombination protein F [Arthrobacter sp. FB24]
 gi|166220698|sp|A0JQT5|RECF_ARTS2 RecName: Full=DNA replication and repair protein recF
 gi|116608681|gb|ABK01405.1| DNA replication and repair protein RecF [Arthrobacter sp. FB24]
          Length = 401

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 96/392 (24%), Positives = 165/392 (42%), Gaps = 41/392 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++++FR+YA + L  +   T+ VG NG+GKTN++EAI +L+     R +S A +
Sbjct: 1   MYLEKLSLTDFRSYAQVDLTLEPGVTVLVGYNGIGKTNLMEAIGYLATLSSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+         V G +      ++LE    R+ R        +R  D L    +   
Sbjct: 61  LRFGTERALIRAKLVRGGQSTV---LELEINGSRANRGRINRSNPVRARDIL-GICQTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G    RRRFLD ++ ++ PRH     D++R+++ RN LL  G        
Sbjct: 117 FAPEDLALVKGDPSNRRRFLDELLVSLMPRHSATRTDYDRVLKQRNALLKSGRSGKFTAG 176

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKF 236
             +     +  MA  G ++  AR+E++  +   +     +               L G  
Sbjct: 177 HEATLDVWDQHMARAGAELLYARLELVERIRPHLKAAYAQLTDGSKEADAIYRSTLQGIL 236

Query: 237 DQ-----------------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
           D                        S   L + Y +     R+ +     +L+GPHR D+
Sbjct: 237 DDDGAGAGYAAEPAAVERVEDLRALSVEELTQRYVQAFAASRRKELERGISLVGPHRDDV 296

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLDEDK 330
            +    +A    + S GE   + + + LA   ++   + T G APIL+LD++ A LD  +
Sbjct: 297 EL-ILGEAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGSAPILILDDVFAELDVQR 355

Query: 331 RNALFRIVTDIGSQIFMT-GTDKSVFDSLNET 361
           R  L  IV+    Q+ +T   D  + D L   
Sbjct: 356 RRKLAAIVSGAE-QVLVTAAVDADIPDELAGR 386


>gi|315500822|ref|YP_004079709.1| DNA replication and repair protein recf [Micromonospora sp. L5]
 gi|315407441|gb|ADU05558.1| DNA replication and repair protein RecF [Micromonospora sp. L5]
          Length = 376

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 164/371 (44%), Gaps = 21/371 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y  + +  +    + VG NGVGKTN++EA+ +++     R A+ A +
Sbjct: 1   MYVRRLELVDFRSYERVGVDLEPGPNVLVGANGVGKTNLVEALGYVATLDSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+ S     A V       ++ ++LE    ++ R  ++     R   ++   LR+  
Sbjct: 61  VRMGAASAVIRCAVVHEG---RELLVELEIVPGKANRA-RLGRSPARRARDVLGALRLVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRR+LD ++    PR+     D+ER+++ RN LL   Y       
Sbjct: 117 FAPEDLELVRGDPAERRRYLDDLLVTRQPRYAGVRADYERVVKQRNALLRTSYLARKTGG 176

Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
               D S  +  +A +A+ G  +   R+E++ AL+  + +             +      
Sbjct: 177 TRGGDLSTLAVWDAHLAQHGADLLAGRLELVAALTPHVAKAYDAVAAGRGAAGIAYRPSV 236

Query: 235 KFDQS---FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +  +      AL E  A  L   R  +     TL+GPHR DL +          + S GE
Sbjct: 237 ELPEPGADRAALAEALAAALTANRAAEIERGTTLVGPHRDDLALTLGPLPAK-GYASHGE 295

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350
                + + LA   L+    G  P+L+LD++ A LD  +R  L  +V    SQ+ +T   
Sbjct: 296 SWSYALALRLAGYDLL-RADGIEPVLVLDDVFAELDTGRRERLAELVGGA-SQLLVTCAV 353

Query: 351 DKSVFDSLNET 361
           D  V  +L  T
Sbjct: 354 DDDVPATLRGT 364


>gi|256821231|ref|YP_003145194.1| DNA replication and repair protein RecF [Kangiella koreensis DSM
           16069]
 gi|256794770|gb|ACV25426.1| DNA replication and repair protein RecF [Kangiella koreensis DSM
           16069]
          Length = 369

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 162/376 (43%), Gaps = 20/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L+I  FRN    RL F  Q  I  G+N  GKT+ILE++  L  GR FR + ++ +
Sbjct: 1   MHIQSLSIQNFRNLQPSRLHFSPQLNIIYGNNAAGKTSILESLFILGHGRSFRTSRHSKL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 SF + F+ +        + ++    +D +VR   +N   +  + +L   + I  
Sbjct: 61  INYEQDSF-TLFSELYSHNVQQRLGVQRFRNNDVNVR---LNQEPLAKLSDLVSLIPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P    + +     RR+ LD  VF ++    +R    +R++  RN+LL  G        
Sbjct: 117 LAPEHYELLTKGPSGRRKLLDWGVFHVEHSFLKRWQACQRIILQRNKLLK-GSLSYKDLE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + ++Q+  L  ++N  R +  ++LS    E +  +  P ++LSL  +   +       L 
Sbjct: 176 AWDSQLIPLSDQVNQYRQDYCDSLSPYFHE-IASQFLPDVQLSLEFYKGWQGKDLESLLV 234

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+Y K        D     T     ++DL +    K +   + S G+QK+V   + LA  
Sbjct: 235 EQYLK--------DKKLGYTQSTIQKADLKI-LSGKRLAADYLSRGQQKLVTTALKLAQL 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSL---N 359
           RL        P+ LLD+I A LDE+ +  L   +       QIF+T        SL    
Sbjct: 286 RLAQERGQQYPVFLLDDIGAELDENHQKLLLNFLAKQPEKQQIFITCVHLDPLKSLINRY 345

Query: 360 ETAKFMRISNHQALCI 375
             A+   + +     I
Sbjct: 346 NNARLFHVEHGAVSII 361


>gi|269118645|ref|YP_003306822.1| DNA replication and repair protein RecF [Sebaldella termitidis ATCC
           33386]
 gi|268612523|gb|ACZ06891.1| DNA replication and repair protein RecF [Sebaldella termitidis ATCC
           33386]
          Length = 362

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 164/372 (44%), Gaps = 14/372 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L+++ FR   + ++ FD    +  G NG GKT+++EA+ FL+ G+ FR     ++
Sbjct: 1   MKLKQLSLNNFRCLENKKIEFDPDFNLIYGKNGQGKTSLIEAVYFLATGKSFRTKKVKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           T           +    + G    +I ++  +D+    +  N        +    L +  
Sbjct: 61  TSYDKIRTIVYGSFESKLSGK---TIAIDFNNDKKEYYVDKNKT---KYIDYVGILNVIS 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    I  G    RR F +  +      + + ++DFE++++ RN+L+ E   +     
Sbjct: 115 FIPEDIEIIIGNPSVRRGFFNYEISQTKNIYLKTLVDFEKILKTRNKLIKERKTNKELYH 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242
               +  E G KI + R E +  +S L+    +K       ++L    F+D     +   
Sbjct: 175 IYNEKFIEEGSKIILMRKEYVKNISRLLNLNYRKLFDANSELRLKYDSFIDNIDKMTLEE 234

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +KE++ ++       +     TL+GP + D + +   K       S GE+K ++  + +A
Sbjct: 235 IKEKFREETVKKHDREKRYGYTLVGPQKEDFVFELNGKNAKA-FSSQGEKKSIIFSLKIA 293

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              ++       P+ L+D+IS++ DE ++N++     +   Q F+T T+K     L+   
Sbjct: 294 EIDMLIKEKNEIPVFLIDDISSYFDEIRKNSILNYFKNKNIQCFITSTEK-----LDIEG 348

Query: 363 KFMRISNHQALC 374
           K + I   + L 
Sbjct: 349 KKIYIDKGRILS 360


>gi|85057981|ref|YP_453683.1| recombination protein F [Sodalis glossinidius str. 'morsitans']
 gi|97180974|sp|Q2NX47|RECF_SODGM RecName: Full=DNA replication and repair protein recF
 gi|84778501|dbj|BAE73278.1| DNA metabolism protein RecF [Sodalis glossinidius str. 'morsitans']
          Length = 364

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 148/370 (40%), Gaps = 14/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN +   L   A     VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALSRLMIRDFRNISVADLSLAADFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQSGRV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R   P F     R+E G       S+ L  R+      ++I+      V EL + L + 
Sbjct: 61  IRHEQPEF-VLHGRIEAGNVDARATSVGLS-RNRLGDSTVRIDGSDGHKVAELAQLLPMQ 118

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +G    RR F+D   F  +P       +  RL++ RN  L +        
Sbjct: 119 LITPEGFTLLNGGPKYRRAFMDWGCFHNEPAFFTAWSNLRRLLKQRNAALRQ-VSRYQQL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + ++  L  +I+  R +  +A  +  +     +  P  +L  +       +      
Sbjct: 178 RVWDQELIPLANRISEWRADY-SAAIAADITATCAQFLPEFRLDFSFQRGWDKES----- 231

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             ++ + L    + D     T  GPH++D  +      +     S G+ K+++  + LA 
Sbjct: 232 --DFGELLERQFERDRALTYTASGPHKADFRIRAEGVPVEDIL-SRGQLKLLMCALRLAQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETA 362
              +++  G   + L+D+ ++ LD  +R  L   +    +Q+F++         + +E  
Sbjct: 289 GEFLTHRNGRRCLYLIDDFASELDTGRRRLLAERLKATHAQVFVSAVSADQIRDIPDEKG 348

Query: 363 KFMRISNHQA 372
           K  ++   + 
Sbjct: 349 KMFKVEQGKI 358


>gi|323357954|ref|YP_004224350.1| recombinational DNA repair ATPase [Microbacterium testaceum
           StLB037]
 gi|323274325|dbj|BAJ74470.1| recombinational DNA repair ATPase [Microbacterium testaceum
           StLB037]
          Length = 383

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 96/388 (24%), Positives = 175/388 (45%), Gaps = 25/388 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRNYA + +       +FVG NG GKTN++EA+++L+     R +S A +
Sbjct: 1   MIVEQLGLRDFRNYAEVDVSLSTGANVFVGRNGQGKTNLVEAVAYLATLGSHRVSSDAPM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+ +      R     G   + ++L+     S R  ++N V +R   EL ++ ++  
Sbjct: 61  VKDGTDAAI---VRARLAHGERSVLLELQLNRQGSNRA-RVNGVNVRTA-ELPRYAQVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P   +I  G    RRRF D+++    PR    + D++R++R R  LL           
Sbjct: 116 FAPEDLQIVRGDPSARRRFADQLIVQRTPRMAAVVADYDRVLRQRTALLKSARARGVRGD 175

Query: 182 ---WCSSIEAQMAELGVKINIARVEMINALSSLI------MEYVQKENFPHIKLSLTGFL 232
                   + ++  LG ++  AR+ + + LS  +      +     E      LS+ G  
Sbjct: 176 ALGTLDVWDDKLVTLGTELIEARLALASDLSEPVASAYAAIAGADHEPRLEWALSVGGGD 235

Query: 233 DGKFDQSFCA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
             + D +  A    L E++   L   R  +     TL+GPHR DL++      +   + S
Sbjct: 236 PEEGDAATSAPGGPLAEQFRAALAARRSAELERGLTLVGPHRDDLVLRVRGLPVK-GYAS 294

Query: 289 TGEQKVVLVGIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
            GE   V + + LA A ++   +    P+L+LD++ A LD  +R  L  +V      I  
Sbjct: 295 HGESWSVALALRLASAEILRAESRLGDPVLILDDVFAELDAGRRARLAELVGGYEQVIVT 354

Query: 348 TGTDKSVFDSLNETAKFMRISNHQALCI 375
           +  ++ V D+L   A  +R+   Q + +
Sbjct: 355 SAVEEDVPDAL--RAHVVRVEAGQIVTV 380


>gi|103487192|ref|YP_616753.1| recombination protein F [Sphingopyxis alaskensis RB2256]
 gi|98977269|gb|ABF53420.1| DNA replication and repair protein RecF [Sphingopyxis alaskensis
           RB2256]
          Length = 369

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 132/370 (35%), Positives = 200/370 (54%), Gaps = 6/370 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FRN+A   L          GDNG GKTNILEAIS L+PGRG RRA  +D+
Sbjct: 1   MTLVRLSLTDFRNHAGADLAAAPGLVALHGDNGAGKTNILEAISLLAPGRGLRRAPLSDM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            R G+   F+ FA V   EGL  +++       +   R ++IN         L + L I 
Sbjct: 61  VRDGAHGGFAVFAEVAAAEGLPPVALGTGIEPAQPRRRIVRINGAPA-AATALGEWLAIL 119

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182
           WL P+MDR+F   +  RRRFLDR+V A+DPRH +    +E  +R R +LL +    D +W
Sbjct: 120 WLTPAMDRLFVETAGNRRRFLDRLVLALDPRHAQHGNRYEAALRARGKLLADLAAADETW 179

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            +S+EAQ+AE G  ++ AR++ + ALS    E   + + P  +  LT       ++S   
Sbjct: 180 LTSLEAQLAEHGAAMDAARLDTLAALS---AELAGQPDAPFARPLLTLVDSEGAERSAPH 236

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E         R++D+ + R   GPHR DL+  +       A  STGEQK +L+ + LA
Sbjct: 237 SAEALKALFAARRRIDAAAGRATAGPHRDDLVAVHAVTGRAAARCSTGEQKAMLLSLVLA 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           H   ++   G  P+LLLDE++AHLD  +R AL+  +   G Q ++TGT+ ++FD++    
Sbjct: 297 HGDCVARRRGQRPVLLLDEVAAHLDPLRRAALYERLAGQGGQAWLTGTEAALFDAMPGPV 356

Query: 363 KFMRISNHQA 372
              RI   + 
Sbjct: 357 TRYRIIGGRI 366


>gi|237715558|ref|ZP_04546039.1| DNA replication and repair protein RecF [Bacteroides sp. D1]
 gi|262408567|ref|ZP_06085113.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229444267|gb|EEO50058.1| DNA replication and repair protein RecF [Bacteroides sp. D1]
 gi|262353432|gb|EEZ02526.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 372

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 84/375 (22%), Positives = 150/375 (40%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K ++I  ++N   + L F A+   F G NG+GKTN+L+A+ FLS  +       +  
Sbjct: 1   MILKRISILNYKNLEEVELGFSAKLNCFFGLNGMGKTNLLDAVYFLSFCKSSGNPIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R     FF      E  +G   +I   ++ R  +  +    N        +    L + 
Sbjct: 61  IRHEQD-FFVIQGFYEAEDGTPEEIYCGMKRRSKKQFKR---NKKEYSRFSDHIGFLPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSW 182
            + P+   + +G S ERRRF+D ++   D  +   +I + + +  RN LL      +   
Sbjct: 117 MVSPADSELIAGGSDERRRFMDVVISQYDKEYLEALIRYNKALVQRNTLLKSEFPVEEEL 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E  M++ G  +   R   I     +   +    +     + L+     +       
Sbjct: 177 FLVWEEMMSQAGEIVFRKREAFIREFIPIFQSFYSFISQDKEAVGLSYESHARD------ 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L   R+ D +   +L G H+ +L +   +  I    GS G+ K  LV + LA
Sbjct: 231 --ASLLEVLKQSRERDKIMGFSLRGIHKDELNMLLGEFPIK-KEGSQGQNKTYLVALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL--- 358
               +  T    P+LLLD+I   LD  +   + ++V  D   QIF+T T++   D +   
Sbjct: 288 QFDFLKRTGRTVPLLLLDDIFDKLDASRVEQIVKLVGGDNFGQIFITDTNRGHLDRILHK 347

Query: 359 -NETAKFMRISNHQA 372
                K  R+     
Sbjct: 348 VGSDYKIFRVEEGTI 362


>gi|119471660|ref|ZP_01614045.1| gap repair protein with nucleoside triP hydrolase domain, part of
           RecFOR complex that targets RecA to ssDNA-dsDNA junction
           [Alteromonadales bacterium TW-7]
 gi|119445439|gb|EAW26726.1| gap repair protein with nucleoside triP hydrolase domain, part of
           RecFOR complex that targets RecA to ssDNA-dsDNA junction
           [Alteromonadales bacterium TW-7]
          Length = 364

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 160/375 (42%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRN  +L L       I  G+NG GKT++LEAI +LS G+ FR   +  +
Sbjct: 1   MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTPKHKSI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
                  F      + G + + D+SI +     R     L+I     R + EL + + + 
Sbjct: 61  IAHQQEQFV-----IHGRKMVHDLSIPIGISKTRLGETNLKIQGKASRKISELAQLMPVQ 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-SW 182
            + P    +F G   ERR+FLD  +F ++         F ++++ RN LL     +    
Sbjct: 116 IITPESYSLFFGGPKERRKFLDLGLFHVEHEFFYLWQSFNKVLKQRNALLKSKPKNYFDQ 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + +   L  +IN  R+  I+       + +  E      L+L   L+  F+  +  
Sbjct: 176 IKFWDKEFVRLAEEINKLRLAYISRFKQQFFDKMCSE------LTLIRDLEMTFNAGWKE 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E  A  L    + D+    T  GPH++D        ++     S G+ K++L  + + 
Sbjct: 230 -NESLADALEQNFERDARQGFTSKGPHKADFSFSVAGNSVENTF-SRGQLKLLLYALKVT 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ----IFMTGTDKSVFDSL 358
              LI + T    ILL+D++ + L ED +  + ++++   SQ      ++ +  +V + +
Sbjct: 288 QNSLIESETDKQSILLIDDLPSELGEDTKEKVGQLLSHCSSQIFISSILSESISAVVEPM 347

Query: 359 NETAKFMRISNHQAL 373
               K   + +   +
Sbjct: 348 QRELKMFHVKHGNLI 362


>gi|194363781|ref|YP_002026391.1| recombination protein F [Stenotrophomonas maltophilia R551-3]
 gi|226737839|sp|B4SR07|RECF_STRM5 RecName: Full=DNA replication and repair protein recF
 gi|194346585|gb|ACF49708.1| DNA replication and repair protein RecF [Stenotrophomonas
           maltophilia R551-3]
          Length = 364

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 153/372 (41%), Gaps = 10/372 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + + R + ++ L       +  GDNG GKT+ILEA+  ++ GR FR      +
Sbjct: 1   MQIRRLALHQLRRFNAVELSPQPGLNLLTGDNGAGKTSILEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  +        E          K   R        +++   +  +  L   L +  
Sbjct: 61  VRQGQEALEIFVEWDEQRASHPPHRRKAGLRHSGQDWKGRLDGEDVAQLGNLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 121 FEPGSHALVSGGGEPRRRFLDWGLFHVEPDFLSLWRRYSRALKQRNALLKQGGPSR-MLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R   +  L    +  +  E  P + +        +    +   +
Sbjct: 180 TWDHELAEAGEPLTSRRQHYLERLQQRTVA-LAAELAPQLGIQ-----AMELSPGWRRHE 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T +GPHR+D  VD+ +     A  S G+ K+  +   LA A
Sbjct: 234 LPLADALLLARERDRQAGYTSVGPHRADWSVDFHNIPGRDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
              +   G  P++ LD++++ LD   +  +   +    +QIF+T T+  +    L   A+
Sbjct: 293 EDYAEQRGEWPVIALDDLASELDRTHQARVLERLLGGPAQIFVTATETPAALQELTHIAR 352

Query: 364 FMRISNHQALCI 375
              + + Q + +
Sbjct: 353 -FHVEHAQIVAV 363


>gi|126724508|ref|ZP_01740351.1| recombination protein F [Rhodobacterales bacterium HTCC2150]
 gi|126705672|gb|EBA04762.1| recombination protein F [Rhodobacterales bacterium HTCC2150]
          Length = 371

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 125/365 (34%), Positives = 199/365 (54%), Gaps = 11/365 (3%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           + +S FR++  L    D +     G NG GKTNILEA+S LSPGRG RRA+  D++R   
Sbjct: 11  IALSHFRSHKLLNQPLDGRPVAIFGPNGAGKTNILEAVSLLSPGRGLRRATADDLSRKPE 70

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
              +   A +       +I+++ E    R V      D        L +  +I WLVP+M
Sbjct: 71  ALGWKVSATLNSPHRTHEIAMRAEAGASRVVTI----DEKTAPQVALGRIAQILWLVPAM 126

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
           DR++   + ERRRFLDR+  +  P H   ++ +++ MR RNRLL +   D+ W  ++E Q
Sbjct: 127 DRLWIEGAGERRRFLDRITLSFQPNHAEAVLSYDKAMRERNRLLKDHVRDAHWYLALEGQ 186

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           MA+ G +I+  R++ ++ L+    +   K  FP   L+L      + +++    +    +
Sbjct: 187 MAKSGAEIHRNRIDALSLLAK--AQSNAKTAFPAADLTL-----IEGEENIGFDEASLRE 239

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L + R  D  + RTL+GPHRSD+   +  K I     STGEQK +L+ + L++AR ++ 
Sbjct: 240 VLANNRPNDLRAGRTLVGPHRSDVAALFAAKGIDARQCSTGEQKALLISLILSNARALAT 299

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
                PI+LLDE++AHLD+++R AL+  +T IG+Q FMTGT   +F  +   A+ + +S 
Sbjct: 300 LNDAPPIILLDEVAAHLDDNRRAALYDEITAIGAQAFMTGTGVELFAEMKGRAQALYVSE 359

Query: 370 HQALC 374
              L 
Sbjct: 360 SGGLS 364


>gi|330806660|ref|YP_004351122.1| DNA replication and repair protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327374768|gb|AEA66118.1| DNA replication and repair protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 357

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 87/363 (23%), Positives = 150/363 (41%), Gaps = 17/363 (4%)

Query: 16  RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFST 75
           RN   +      +  I  G NG GKT++LEA+  L   R FR      V +    +  + 
Sbjct: 2   RNLHPVTFSPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLLPVIQYDQLAC-TV 60

Query: 76  FARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
           F +VE  EG    + I   +RD +    ++I+    R   +L + L +  + P   R+  
Sbjct: 61  FGQVELAEGGHSALGI---SRDRQGEFQIRIDGQNARSAAQLAEILPLQLINPDSFRLLE 117

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           G    RR+FLD  VF ++PR        ++ +R RN  L  G  D+   +  + ++ +  
Sbjct: 118 GAPKIRRQFLDWGVFHVEPRFMTTWQRLQKALRQRNSWLRHGTLDAVSQAVWDRELCQAS 177

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            +I+  R   I AL  +  + +  E      L+L+ +     D+    +       L   
Sbjct: 178 AEIDEYRRAYIKALKPVFEQTLS-ELVELEGLTLSYYRGWDKDRELSTV-------LAGS 229

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
            + D     T  GP R+DL +            S G+QK+V+  + +A   L+S      
Sbjct: 230 LQRDQQMGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQGHLVSQARRGQ 288

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNETAKFMRISNHQ 371
            I L+D++ + LDE  R AL R++ D+  Q+F+T  D  +               +   +
Sbjct: 289 CIYLVDDLPSELDEAHRRALCRLLEDLRCQVFITCVDHELLREGWQTETPVALFHVEQGR 348

Query: 372 ALC 374
              
Sbjct: 349 ITQ 351


>gi|254447440|ref|ZP_05060906.1| DNA replication, recombinaison and repair protein [gamma
           proteobacterium HTCC5015]
 gi|198262783|gb|EDY87062.1| DNA replication, recombinaison and repair protein [gamma
           proteobacterium HTCC5015]
          Length = 357

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 164/373 (43%), Gaps = 19/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I   R  A++ +       +  G N  GKT++LEAI  LS GR FR + + + 
Sbjct: 1   MSLQQLTIQNIRRLATVEMALSPSLNVIYGLNASGKTSLLEAIHLLSTGRSFRTSRFTEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +       A V   +G   I ++   R+      +++    ++ V EL + L    
Sbjct: 61  LSHEAKQA-VVAATVHQPDGACRIGVQRSARE----WLMKVGGERVQRVSELARWLPTQV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR+FL+  VF ++ R     + ++R ++ RN  L +   D+    
Sbjct: 116 IHPDSHFLLTAGPSYRRQFLNWGVFHVEHRFYPAWVRYQRALKQRNSALRQK--DARMDG 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + +++++     I+  R E +  L+ ++  +V        ++ +        +Q+   + 
Sbjct: 174 AWDSELSRAASFIHELREEYVADLNRILPRFVAAM-MGQQEVQMVYQPGWDSEQTLATV- 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L D R+ D     T  GPHR+DL              S G+QK+++  + LA A
Sbjct: 232 ------LRDYREKDRYRGHTQQGPHRADLSFKVNGYKAQAEI-SRGQQKMLVSALRLAQA 284

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS--VFDSLNETA 362
            L    +G + ++++D++ A LDE  RNAL  ++ D+ SQ+ +T  +      ++  E  
Sbjct: 285 ALYQEQSGQSCLIMMDDLPAELDEKHRNALMGLLADMQSQVLVTCVEAEQIPLNAWKE-Y 343

Query: 363 KFMRISNHQALCI 375
           K   + + +   +
Sbjct: 344 KLFHVEHGKVQAV 356


>gi|302864512|ref|YP_003833149.1| DNA replication and repair protein RecF [Micromonospora aurantiaca
           ATCC 27029]
 gi|302567371|gb|ADL43573.1| DNA replication and repair protein RecF [Micromonospora aurantiaca
           ATCC 27029]
          Length = 377

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 94/371 (25%), Positives = 164/371 (44%), Gaps = 21/371 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y  + +  +    + VG NGVGKTN++EA+ +++     R A+ A +
Sbjct: 1   MYVRRLELVDFRSYERVGVDLEPGPNVLVGANGVGKTNLVEALGYVATLDSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+ S     A V       ++ ++LE    ++ R  ++     R   ++   LR+  
Sbjct: 61  VRMGAASAVIRCAVVHEG---RELLVELEIVPGKANRA-RLGRSPARRARDVLGALRLVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRR+LD ++    PR+     D+ER+++ RN LL   Y       
Sbjct: 117 FAPEDLELVRGDPAERRRYLDDLLVTRQPRYAGVRADYERVVKQRNALLRTSYLARKTGG 176

Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
               D S  +  +A +A+ G  +   R+E++ AL+  + +             +      
Sbjct: 177 TRGGDLSTLAVWDAHLAQHGADLLAGRLELVAALTPHVAKAYDAVAAGRGAAGIAYRPSV 236

Query: 235 KFDQS---FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +  +      AL E  A  L   R  +     TL+GPHR DL +          + S GE
Sbjct: 237 ELPEPGADRAALAEALAAALTANRAAEIERGTTLVGPHRDDLALTLGPLPAK-GYASHGE 295

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350
                + + LA   L+    G  P+L+LD++ A LD  +R  L  +V    SQ+ +T   
Sbjct: 296 SWSYALALRLAGYDLL-RADGIEPVLVLDDVFAELDTGRRERLAELVGGA-SQLLVTCAV 353

Query: 351 DKSVFDSLNET 361
           D  V  +L  T
Sbjct: 354 DDDVPATLRGT 364


>gi|78221231|ref|YP_382978.1| recombination protein F [Geobacter metallireducens GS-15]
 gi|97180732|sp|Q39ZS1|RECF_GEOMG RecName: Full=DNA replication and repair protein recF
 gi|78192486|gb|ABB30253.1| DNA replication and repair protein RecF [Geobacter metallireducens
           GS-15]
          Length = 365

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/374 (22%), Positives = 155/374 (41%), Gaps = 12/374 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + IS FRN A+  + FD +  +  G NG GKT++LEAI  L   + FR A   D+
Sbjct: 1   MFVTKIQISSFRNIAAAEIRFDRRFNVLHGANGQGKTSVLEAIYLLGTMKSFRLAKTPDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +P      A + G      +  ++     +  R  +++   +  + +   ++    
Sbjct: 61  VSWNTP-----HALLRGWAERDGVGREIALYLGKEGRKARVDQKPVTRLADFFGNVNAVV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +       RRR+LDR +F+ D  +     ++ RL++ RN LL  G  +     
Sbjct: 116 FSPEEIAMARSGPDLRRRYLDRAIFSGDLGYLLLHHEYHRLLKQRNALLKRGSREG--LD 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               Q+AE G ++ + R+  +  +  L+  + ++      +  L                
Sbjct: 174 IWTGQLAEAGTRLMVKRMGYLAEIEPLVQRFYREIAGGEEEAGLAYRPHLTTPDLVSREG 233

Query: 245 EEYAKKLFDGRKMDS-MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +    LF   + +      T++GPHR D+     +  +   HGS G+Q+  ++ + +A 
Sbjct: 234 TDALLALFGAHEAEELRRGTTVVGPHRDDVDF-VLNGRVIRTHGSQGQQRSFVLALKMAE 292

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
              +       P+LLLD+IS+ LD  +   L   + +   Q+F+T TD S    L   A 
Sbjct: 293 IEYLERLNDAPPVLLLDDISSELDPQRNANLMTFLREKRMQVFITTTDVSTL-RLAGIAT 351

Query: 364 F--MRISNHQALCI 375
                +S      +
Sbjct: 352 HASFHVSRGTVTPL 365


>gi|256823909|ref|YP_003147869.1| DNA replication and repair protein RecF [Kytococcus sedentarius DSM
           20547]
 gi|256687302|gb|ACV05104.1| DNA replication and repair protein RecF [Kytococcus sedentarius DSM
           20547]
          Length = 390

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 159/387 (41%), Gaps = 30/387 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L + +FR+Y    L   A  T+FVG NG GKTN++EA  +L+     R +S   +
Sbjct: 1   MRLRHLAVRDFRSYEQADLDLPAGVTVFVGRNGQGKTNLVEAAGYLATLGSHRVSSDQPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+       A         +  ++L+    R+ R  Q+    +    ++   LR   
Sbjct: 61  VRVGAEHAIIRGAVDHDG---RETVLELQINPGRANRA-QLGRSPVPRARDVLGTLRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G    RR FLD ++ A  PR      D+ + ++ RN LL +         
Sbjct: 117 FAPEDLALVKGDPAGRRAFLDALLVARQPRWAGVQADYAQALKQRNALLRDVRASRSAPS 176

Query: 181 ----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---------------F 221
               +   + +  +A  G  +  AR+ ++  L   + +  ++ +                
Sbjct: 177 SSTVAMLEAWDEHLAVGGASLLYARLRLVQDLRRFVEKAYRQVSEAASEAGLTYRWSLVG 236

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
                +L+G   G        L   ++  L   R+ +     TL+GPHR DL +      
Sbjct: 237 DEADAALSGLTGGGPVPERDDLARLFSASLGAMRQRELERGITLVGPHRDDLDLTLGPVP 296

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE   + + + LA   L+    G  P+L+LD++ A LD  +R  L  +V D 
Sbjct: 297 AK-GYASHGESWSLALSLRLAAFELLRTDLGTDPVLVLDDVFAELDTGRRERLAELVADA 355

Query: 342 GSQIFMT-GTDKSVFDSLNETAKFMRI 367
             Q+ +T   +  V  +L E A  + +
Sbjct: 356 E-QVLVTAAVETDVPQTLRERAHHVDV 381


>gi|307543592|ref|YP_003896071.1| recombination protein F [Halomonas elongata DSM 2581]
 gi|307215616|emb|CBV40886.1| recombination protein F [Halomonas elongata DSM 2581]
          Length = 371

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 152/372 (40%), Gaps = 18/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L     RN  +L L    +  +F+GDNG GKT++LE I  L  GR FR       
Sbjct: 1   MPLDRLAFQGLRNLQALELSPGPRINLFIGDNGTGKTSLLEGIHVLGMGRSFRTRQLRHA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                    +   R+ G      + I +  R D     +++    +  V +L + L +  
Sbjct: 61  IAH-EEDGVTLHGRLSG---EPPLPIGVRRRRDSDELEMRLAGERVGRVSQLVETLPLQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P   R+  G    RR FLD  VF +          F R ++ RN LL  G    +   
Sbjct: 117 INPDAFRLLEGSPAGRREFLDWGVFHVKHDFLDAWKRFRRALKHRNALLRHGRMSDASMG 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCAL 243
           + E ++A  G +++  R   I+A   +  E ++     P ++L      D          
Sbjct: 177 AWERELAHWGARLDELRRAWIDAFLPVFQETLEGLIALPGLQLRYARGWD---------R 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           K + A  L   R+ D     T  GP R+DL +    +   I   S G+QK+V+  + LA 
Sbjct: 228 KRQLADVLEQSRETDRQMGFTQQGPQRADLGIRL-GRRPAIEILSRGQQKLVVSALKLAQ 286

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD---SLNE 360
            RL+   TG + + L+D++ A LD + R      +  +  Q F+T  D +       ++ 
Sbjct: 287 GRLLERLTGRSCVYLIDDLPAELDGEHRRVFCEWLAHMRCQAFITSVDPNALTGSWDVDT 346

Query: 361 TAKFMRISNHQA 372
                 + + +A
Sbjct: 347 PVSMFHVKHTEA 358


>gi|325678551|ref|ZP_08158162.1| DNA replication and repair protein RecF [Ruminococcus albus 8]
 gi|324109770|gb|EGC03975.1| DNA replication and repair protein RecF [Ruminococcus albus 8]
          Length = 379

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/379 (20%), Positives = 154/379 (40%), Gaps = 15/379 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L+++ F+N   + +    +  IF G N  GKTN++EAI   S  R FR      +
Sbjct: 1   MFITELSVNGFKNLKGISIKPHEKINIFCGRNAQGKTNLIEAIWLCSGARSFRSTKDRRM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                    +   R +      +I+  +  + +   + + +N V ++   +L   L    
Sbjct: 61  I-GDDEQVMNIGLRFKNSFREQEIAFAM-AKPNIKEKNVTLNGVKLKAPSKLFGGLNCVI 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    +  G    RR+F+D  V  I   +      +E L+  RN LL     G     
Sbjct: 119 FTPEDLELSKGSPDNRRQFIDLSVAQIKNSYSAVTYKYEALIERRNLLLKNINYGKAGKD 178

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + Q+A++G  I++ R      LS+      ++ +    KL ++ +      +   
Sbjct: 179 ELEMWDVQLAQMGAFISLHRYNYTKKLSAYAQMLYEEISGGSEKLDISYYSTVYDSEMLD 238

Query: 242 -------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                   LK+ Y + L +    D  +  T  G HR DLI     + +     S G+ + 
Sbjct: 239 KATEYTGELKDRYFEVLKNNISDDLRAGFTQKGVHRDDLICKINGRPVR-EDASQGQHRS 297

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
             + + L+ A ++++     P++LLD++ + LD  ++  +   + D+  Q+F+T  D ++
Sbjct: 298 AALIMKLSQAYILNDEIDDFPVILLDDVLSELDPSRQRFVISKIHDM--QVFITCCDMNI 355

Query: 355 FDSLNETAKFMRISNHQAL 373
               +   K   I   Q +
Sbjct: 356 PFDESSHGKIFNIEKGQII 374


>gi|307150124|ref|YP_003885508.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7822]
 gi|306980352|gb|ADN12233.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7822]
          Length = 384

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 174/387 (44%), Gaps = 25/387 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  FRNY   R+ FD+Q TI VG+N  GK+N+LEA+  L+  +  R +   D+
Sbjct: 1   MYLKTVQLRSFRNYREQRVNFDSQKTIIVGNNAQGKSNLLEAVELLATLKSHRVSRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+ S     A +E   G A++++ L        R + +N   +R   +    L    
Sbjct: 61  VLEGAASG-QILAALERAYGQAELALILRISGR---RTVILNQEPLRRQMDFLGVLNAVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174
                  +  G    RR ++D ++  ++P +   +  + ++++ RN LL           
Sbjct: 117 FSSLDLDLVRGAPDARRSWIDTLLIQLEPIYAHILSQYYQVLKQRNALLKKFRQREEDNL 176

Query: 175 -------EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                  +   D S     + Q+AE G ++   R  ++  L+ L  ++    +     L 
Sbjct: 177 NPEIIVEQLPSDISQLKLWDVQLAEAGSRVTRRRARVLERLTPLAQQWHSNISGKTEVLE 236

Query: 228 LTGFLDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           +    +  + +     +K+ + +K+   R  +     T++GPHR D+     +      +
Sbjct: 237 IKYIPNVSWTEDDPLEVKQAFLEKIEKRRMAEQQLGTTVVGPHRDDIEF-IINHTPAKYY 295

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           GS G+Q+ +++ + LA  +LI    G  P+LLLD++ A LD +++N L   + D   Q  
Sbjct: 296 GSQGQQRTLVLALKLAELQLIEEVVGEPPLLLLDDVLAELDPNRQNQLLEAIQD-RFQTL 354

Query: 347 MTGTDKSVFDS-LNETAKFMRISNHQA 372
           +T T    FDS   ++++ + +   + 
Sbjct: 355 ITTTHLHSFDSGWLKSSQILSVEAGEI 381


>gi|158334838|ref|YP_001516010.1| recombination protein F [Acaryochloris marina MBIC11017]
 gi|189039615|sp|B0CB57|RECF_ACAM1 RecName: Full=DNA replication and repair protein recF
 gi|158305079|gb|ABW26696.1| DNA replication and repair protein RecF [Acaryochloris marina
           MBIC11017]
          Length = 374

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 174/376 (46%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++ +FRNY + ++ F A  TI VG N  GK+N+LEA+  LS  +  R +   D+
Sbjct: 1   MYLQQLHLIQFRNYVAQQVEFSAPKTILVGPNAQGKSNLLEAVELLSTLKSHRVSRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  S     A ++   G  D+S+ L        R + +N   IR   +   HL I  
Sbjct: 61  VKDG-ESLSQVTATLQRESGPLDLSLTLRANGR---RTVSVNSETIRRQLDFLGHLNIVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
                  +  G   ERR +LD ++  ++P +   +  ++++++ RN  L           
Sbjct: 117 FSSLDMDLVRGGPGERRNWLDAVLVQLEPVYAHLLQQYQQVLKQRNAYLKHHRADDAPQL 176

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D         Q+A  G ++   R  M+  L  L   + Q  +    +L +    +  +D 
Sbjct: 177 DPQQLVLWNQQLAASGSRVIQRRQRMLMRLVPLAGHWHQTISGHQEQLEILYTPNVSYDP 236

Query: 239 SFCA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            F   L  ++  +L +   ++ +   +L+GPHR ++ +   +      +GS G+Q+ +++
Sbjct: 237 QFPEQLYPQFLSQLEEKSMLEQLQGLSLVGPHRDEVTL-LINGTPARQYGSQGQQRTLVL 295

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA  +LI    G AP+LLLD++ A LD +++N L   +     Q  +T T    FD+
Sbjct: 296 ALKLAELKLIEEVVGEAPLLLLDDVLAELDLNRQNQLLDAI-QTRFQTLITTTHLGAFDA 354

Query: 358 -LNETAKFMRISNHQA 372
              ++A+ + +   Q 
Sbjct: 355 KWLDSAQILTVKAGQV 370


>gi|149912066|ref|ZP_01900657.1| recombination protein F [Moritella sp. PE36]
 gi|149804862|gb|EDM64899.1| recombination protein F [Moritella sp. PE36]
          Length = 361

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 153/370 (41%), Gaps = 12/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LN ++FRN     +   A   I +GDNG GK+++LEAI +L  GR FR    + V
Sbjct: 1   MGLVKLNFTDFRNIKQASMQPGAGINIILGDNGSGKSSVLEAIHYLGLGRSFRTHLTSRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G   F + F++ +       I+     +   S   L+I       + EL   L +  
Sbjct: 61  VQHGEKDF-TLFSQCQQRLNDDRITTIGLKKSKNSDTELKIAGQKAERLAELPGILPLQL 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + S     RR+F+D  VF ++           RL++ RN +L  G   +   +
Sbjct: 120 IHPESFTLLSSGPKLRRQFVDWGVFHLETEFFATWAKLTRLLKQRNAILKSGKRYAE-LA 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + + A  G  I   R   +  L+ +I   +  +  P     +        D    AL 
Sbjct: 179 YWDKEFAVQGTIIAQMRRRYLEQLNPIIKSALA-DFLPEYDFDIRYHQGWDSDIELAAL- 236

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L      D     T +GP ++D+ +   +        S G+ K+ +  + L+  
Sbjct: 237 ------LKQNFMRDQQLGYTSLGPQKADIRIR-ANGVPAHDILSRGQLKLAVCAMRLSQG 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
             +S  +      L+D+ S+ LD+ KR  L + + +  +Q+F+T  DKS   +L  E  K
Sbjct: 290 LFLSQHSNKRCTFLIDDFSSELDDSKRKLLAQYLIESKAQVFVTAIDKSQVTALLTEDCK 349

Query: 364 FMRISNHQAL 373
              + + + +
Sbjct: 350 MFHVEHGKLI 359


>gi|145592571|ref|YP_001156868.1| recombination protein F [Salinispora tropica CNB-440]
 gi|189039640|sp|A4X0U0|RECF_SALTO RecName: Full=DNA replication and repair protein recF
 gi|145301908|gb|ABP52490.1| DNA replication and repair protein RecF [Salinispora tropica
           CNB-440]
          Length = 377

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 165/385 (42%), Gaps = 23/385 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y  + +  +    + VG NGVGKTN++EA+ +++     R A+ A +
Sbjct: 1   MYVRRLELVDFRSYERVGVDLEPGANVLVGPNGVGKTNLIEALGYVATLDSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+ +     A V       ++ ++LE    R+ R  ++     R   ++   LR+  
Sbjct: 61  VRMGAAAGIIRCAVVHEG---RELLVELEIVPGRANRA-RLGRSPARRARDVLGALRLVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   +RRR+LD ++    PR+     D+ER++R RN LL   Y       
Sbjct: 117 FAPEDLELVRGDPAQRRRYLDDLLVLRQPRYAGVRTDYERVVRQRNALLRTAYLARKTGG 176

Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
               D S  +  +  +A  G ++   R++++ AL+  +               +      
Sbjct: 177 TRGGDLSTLAVWDDHLARHGAELLAGRLDLVAALAPHVNRAYDAVAAGAGAAGIAYRSSV 236

Query: 235 KFDQSF---CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +   S      L    +  L  GR  +     TL+GPHR +L +          + S GE
Sbjct: 237 ELASSTADRADLTAALSDALAAGRTAEIERGTTLVGPHRDELTLTLGPLPAK-GYASHGE 295

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350
                + + LA   L+    G  P+L+LD++ A LD  +R+ L  +V D  SQ+ +T   
Sbjct: 296 SWSFALALRLAGYDLL-RADGIEPVLVLDDVFAELDTGRRDRLAELVGDA-SQLLVTCAV 353

Query: 351 DKSVFDSLNETAKFMRISNHQALCI 375
           ++ +   L        +   +   +
Sbjct: 354 EEDLPARL--RGARFVVREGEVQRV 376


>gi|325285177|ref|YP_004260967.1| DNA replication and repair protein recF [Cellulophaga lytica DSM
           7489]
 gi|324320631|gb|ADY28096.1| DNA replication and repair protein recF [Cellulophaga lytica DSM
           7489]
          Length = 359

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 162/372 (43%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N+ S    FDA+   FVG NGVGKTNIL+AI  LS G+ +     +  
Sbjct: 1   MLLKKLSLVNYKNFDSKEFDFDAKINCFVGSNGVGKTNILDAIYHLSFGKSYFNPIASQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G   FF         +    I   L+       + ++ N        +    L +  
Sbjct: 61  IKHGED-FFVVDGLFFKNDREEKIICSLKKGA---KKVIKKNGKAYDKFSDHIGFLPLVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   +    S  RR+F+D ++   +  +   ++ + +++  RN LL        FD 
Sbjct: 117 ISPADRDLILEGSDTRRKFIDGVISQSNKEYLTALLKYNKILLQRNSLLKYFAVNHTFDK 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +  S    Q+ E G  I+  RV  +N    +  E     +     +++T         + 
Sbjct: 177 TTLSVYNEQLQEYGTIIHKERVAFLNEFIPIFKEQYAAISGGKEDVTITY--------NS 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L ++  +   +  + D   + T +G H+ DL  +  +  +    GS G+QK  L+ + 
Sbjct: 229 KLLDKDLLQLFNESLEKDRAVQYTTVGTHKDDLSFEINNYPVK-KFGSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVF 355
           LA    I       PILLLD+I   LDE++   +  +V D    QIF++ T     ++V 
Sbjct: 288 LAQFNFIKAQAKTTPILLLDDIFDKLDENRVAQIVSLVDDDNFGQIFISDTHADRTENVV 347

Query: 356 DSLNETAKFMRI 367
            +++++ K  +I
Sbjct: 348 KNIHQSYKIFKI 359


>gi|34540225|ref|NP_904704.1| recF protein [Porphyromonas gingivalis W83]
 gi|51316314|sp|Q7MX24|RECF_PORGI RecName: Full=DNA replication and repair protein recF
 gi|34396537|gb|AAQ65603.1| recF protein [Porphyromonas gingivalis W83]
          Length = 364

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 95/376 (25%), Positives = 157/376 (41%), Gaps = 18/376 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L+I  F++ A+    F  +    VG+NG+GKTN+L+A+ FLS  R         V
Sbjct: 1   MIIEELHIVNFKSIAAADCRFSPKVNCLVGNNGMGKTNLLDALHFLSFCRSHLSVPDNMV 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   +      R E  +G   I + L  R  +  + L+ N      + +      + 
Sbjct: 61  VRHGEEMALLQGLYRDESGDG---IELLLSIRPGK-HKVLRRNKKEYERLSDHIGRFPLV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   ++  G S ERRRF+D+ +   DPR+   +I + R ++ RN +L +   D +  
Sbjct: 117 IVSPQDYQLILGGSDERRRFMDQQLCQQDPRYLSALIQYNRHLQQRNTMLKQDRHDDALM 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E QM     +I   R   I     +  +     +    K+SL+             L
Sbjct: 177 DVLELQMGSYAAEICNKRSRFIEDFLPVFNDLYSDISGSAEKVSLSYRSHLADGIPLEEL 236

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L   R  D +   +  G H+ +L +      +    GS G+ K  L+ + LA 
Sbjct: 237 -------LRRSRPKDYLLGFSSCGVHKDELEM-LLGGVLIRKIGSEGQNKTFLISMKLAQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL---- 358
            R         PILLLD+I   LD  +   + R+V   G  QIF+T T++   D +    
Sbjct: 289 FRHQQLHGDETPILLLDDIFDKLDATRVERIIRLVGGNGFGQIFITDTNRKNLDEIIASW 348

Query: 359 NETAKFMRISNHQALC 374
           +E  +  +I N Q   
Sbjct: 349 SEDYRLFKIENGQIFQ 364


>gi|86142885|ref|ZP_01061307.1| DNA replication and repair protein RecF, ABC family ATPase
           [Leeuwenhoekiella blandensis MED217]
 gi|85830330|gb|EAQ48789.1| DNA replication and repair protein RecF, ABC family ATPase
           [Leeuwenhoekiella blandensis MED217]
          Length = 359

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 160/374 (42%), Gaps = 26/374 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N+ S+    DA+   FVG+NGVGKTN+L+A+  LS G+ +        
Sbjct: 1   MILKALSLINYKNFESISFDLDAKINCFVGNNGVGKTNVLDAVYHLSFGKSYFNPITTQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
               +      F  ++G+    D   K+     R   + ++ N  +     +    L + 
Sbjct: 61  INHDAD-----FFVIDGIYDKNDREEKVIVSAKRGQKKVIKRNGKIYERFSDHIGFLPLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179
            + P+   +    S  RR+F+D ++   D  +   +I + +++  RN LL        F+
Sbjct: 116 IISPADRDLIIEGSETRRKFMDGVISQSDKAYLDTLIKYNKILSQRNALLKYFNANHTFN 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
               +    QM ELG  +   R + +   + +  +     +    ++ L           
Sbjct: 176 PDTLAIYNEQMHELGTSLYKKRKQFLEDFTPIFKKRYAAISGDKEEVKLKY--------- 226

Query: 240 FCALKEEYAKKLF-DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
              L +    +LF +  K D   + T +G HR DL        I    GS G+QK  L+ 
Sbjct: 227 KSQLNDAPLNQLFEENLKKDRALQYTSVGTHRDDLNFKIESHPIK-KFGSQGQQKSYLIA 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KS 353
           + LA    I   +   PILLLD+I   LDE +   +  +V D    Q+F++ T     ++
Sbjct: 286 LKLAQFDFIKAQSNTTPILLLDDIFDKLDESRVTQIIDLVNDDNFGQLFISDTHADRTEA 345

Query: 354 VFDSLNETAKFMRI 367
           +   +++T K  ++
Sbjct: 346 IVKEIHQTYKLFKL 359


>gi|167855650|ref|ZP_02478408.1| recombination protein F [Haemophilus parasuis 29755]
 gi|167853222|gb|EDS24478.1| recombination protein F [Haemophilus parasuis 29755]
          Length = 361

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 76/371 (20%), Positives = 160/371 (43%), Gaps = 18/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I+ FRN  ++ L  +     F+G NG GKT++LEAI +L  G+ F+      +
Sbjct: 1   MSLSRLIINNFRNLTAVDLELNHGFNFFIGANGSGKTSLLEAIFYLGHGKSFKSHISNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F + F +++  E   + S+ L+ ++ +    L+IN    + + +L   L +  
Sbjct: 61  IKYNQEEF-TLFGKIQ--EEKHECSVGLQ-KNRQGETILRINGESNKKIADLAYLLPMQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G  + RR FLD  +F  +          +RL++ RN  L +    +    
Sbjct: 117 ITPEGLTLLNGGPIYRRAFLDWGLFHQNTDFYHNWNSLKRLLKQRNAALVQTRHYNE-LK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++++    ++ +R     ++ + I +  Q    P ++++ T +   + ++      
Sbjct: 176 PWDVELSKFAQIVSQSRAVYAESILTYIEKNCQ-FFLPELEITATFYQGWEKER------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +YA  L  G + D     T++GP ++D         +     S G+ K+++  + LA  
Sbjct: 229 -DYADLLAQGFERDRSVGYTMVGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL----NE 360
                      I L+D+ ++ LD  K   L   +   GSQ+F+T   +     +     +
Sbjct: 287 EYFIAQKNRQCIFLIDDFASELDTQKCELLADRLYQSGSQVFVTAITQEQLKPIQGKRQD 346

Query: 361 TAKFMRISNHQ 371
            A    I + +
Sbjct: 347 NATSFFIKDGK 357


>gi|308047725|ref|YP_003911291.1| DNA replication and repair protein RecF [Ferrimonas balearica DSM
           9799]
 gi|307629915|gb|ADN74217.1| DNA replication and repair protein RecF [Ferrimonas balearica DSM
           9799]
          Length = 355

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 153/370 (41%), Gaps = 21/370 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L+I   RN  +  L       +  GDNG GKT++LEAI FLS GR FR       
Sbjct: 1   MGIDRLHIQNLRNIQAATLEPAGGLNLIYGDNGSGKTSVLEAIWFLSVGRSFRTHLAPRA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            R   P+    FAR    E       KL  R  R     ++IN      + +L   L + 
Sbjct: 61  IRHDEPN-LVLFARTTAGE-------KLGLRRGRDGDNEVRINGERPERLADLAACLPLQ 112

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    +       RR F+D   F  DP+       + RL++ RN+LL +   D  + 
Sbjct: 113 LISPESFALLLEGPQARREFIDWGAFHSDPQFIGIWSRYRRLLKQRNQLLRQQAPDHQF- 171

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           +  + Q++E G  +   R   +++L+  +   +  +  P + + ++            A 
Sbjct: 172 AIWDKQLSEYGEALTAIRKRWVSSLNDTLTGII-NQFLPDLPIRVSFSQGWDSKSPLSA- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                 ++    + D     T+ GPH++DL +   +  +     S G+ K+++  + +A 
Sbjct: 230 ------QIQGQLERDKQLGYTVSGPHKADLRLRVGNLPVQDGL-SRGQLKLLVCALKIAQ 282

Query: 304 ARLI-SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
            +++    T    I L+D++++ LDE  R  L   +   G Q+F+T  +      +    
Sbjct: 283 GKILGQKDTSRGCIYLVDDLASELDESHRTLLLEQLISTGEQVFVTAIEPGQLAMIPWD- 341

Query: 363 KFMRISNHQA 372
           K   +   + 
Sbjct: 342 KRFHVEQGRV 351


>gi|228473756|ref|ZP_04058501.1| RecF protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228274777|gb|EEK13600.1| RecF protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 359

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/360 (24%), Positives = 153/360 (42%), Gaps = 20/360 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L I  F+N  S    F       +GDNGVGKTN L+AI  L   + +  +S    
Sbjct: 1   MFLKRLYILNFKNIESRDFSFSPSLNCLIGDNGVGKTNSLDAIYHLGMTKSYFSSSTLMN 60

Query: 65  TRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R+G   +        EG E     S+K         + L+ N  +   + +      I 
Sbjct: 61  IRLGEDFYLIEGNFEKEGREETVVCSVK-----KGQKKILKRNGKLYEKLADHIGAFPIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179
            + PS   +    S  RR+FLD ++  + P +   ++ + +++  RN LL       Y D
Sbjct: 116 IISPSDRDLIHEGSEARRKFLDGLLSQLYPSYLDTLLRYNKVLAQRNTLLKSFHERQYLD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                  + Q++  G KI   R+  + +   +  E     +    ++S+           
Sbjct: 176 PDTLDIYDDQLSLYGNKIFQVRLAFLESFLPIFQEQYTHLSQGKEEVSIRY--------E 227

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L +++   L +    DS ++ T IG H+ DL++D   + +     S G+QK  L+ +
Sbjct: 228 SRLLGQDFKNLLKESFPQDSAAQYTTIGIHKDDLLLDINGQLVK-KFASQGQQKSFLIAL 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358
            LA    +   T   PILLLD+I   LD  +   L  +VT     Q+F++ TDK   +++
Sbjct: 287 KLAQFHCLYKQTNTTPILLLDDIFDKLDSKRVAQLISLVTRPPFGQVFLSDTDKERTENI 346


>gi|332991511|gb|AEF01566.1| Recombinational DNA repair ATPase [Alteromonas sp. SN2]
          Length = 362

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/371 (23%), Positives = 159/371 (42%), Gaps = 15/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + ++ FRN +S  L      TI  G NG GK++++E+I +L  GR FR   +  V
Sbjct: 1   MKLDKVQLTNFRNISSANLSPSPALTIIRGVNGSGKSSLVESIFYLGFGRSFRTNKHTSV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G   F S FA  +  E    +++  + R + +  C  IN      + +L   + +  
Sbjct: 61  IKTGEEEF-SVFASCKNEESE-TLNLGFQRRRNDTFTC-SINGEHSNKLSDLVSLVPVQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P    +  G   ERRRF D  +F ++   +   + F + ++ RN LL +     +   
Sbjct: 118 FTPQSTDLILGSPSERRRFCDWGLFHVEHDFQMLSVQFSKFLKHRNALLKQQSDLSAPQN 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E    E    ++I R + I+ L+  I E          K+SL  +   + D S    
Sbjct: 178 QYWEQCFLERAEALSIKREDYISKLTP-IFEKYATTFLAEYKVSLNYYKGWEKDAS---- 232

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
               A+ L   R+ D     T  GPH++D+ +            S G+ ++ +  + +A 
Sbjct: 233 ---LAESLVKKREYDGKIGHTTSGPHKADIRLKINGVN-AQELLSRGQLRMAVAALQMAQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--T 361
             L +  T    I LLD++ A LD DKR      + D+ +Q+F+T  + S  + + +   
Sbjct: 289 TELFNTLTNRKSIFLLDDVGAELDADKRELFIDGLLDMDTQVFVTAIESSQLEFIQKYNE 348

Query: 362 AKFMRISNHQA 372
            K   + +   
Sbjct: 349 KKMFHVEHGSV 359


>gi|305681550|ref|ZP_07404356.1| DNA replication and repair protein RecF [Corynebacterium
           matruchotii ATCC 14266]
 gi|305658710|gb|EFM48211.1| DNA replication and repair protein RecF [Corynebacterium
           matruchotii ATCC 14266]
          Length = 382

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 88/375 (23%), Positives = 155/375 (41%), Gaps = 24/375 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L++ +FR++    +      T+FVG NG GKTN++EAI +++     R A  A +
Sbjct: 1   MFIRELSLRDFRSWPHCHVRLGPGITLFVGRNGHGKTNLVEAIGYVAHLGSHRVAQDAPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G P+   S  A  +  E  A + I     +        IN   +    EL   +R  
Sbjct: 61  VRHGQPNARVSATAVRDDRELTAHLLI-----NASGANQASINRTRLNSPRELLGVVRTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178
              P    +  G   ERRR+LD ++    PR      D+E+++R R  LL          
Sbjct: 116 LFCPEDLALVRGEPAERRRYLDNIIATRRPRLAGVKADYEKVLRQRTTLLKTSSAALRRG 175

Query: 179 ------DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTG 230
                   +     +AQ+A  G ++  AR  ++  L  L+ E             ++   
Sbjct: 176 YSGDDGSLATLDVWDAQLARQGAQMIAARRALVTELDPLVHEAYAGIAPESRPAHIAYES 235

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            +     +    ++     +L   R  +    R+L+GPHR DL++   D        S G
Sbjct: 236 TVP-DVGEDPALIEAAMLAELGRMRPKEIDRGRSLVGPHRDDLVITLGDVPAK-GFASHG 293

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349
           E   +++ + L   +L+    G  P+L+LD++ A LD  +R  L  +  D+  Q+ +T  
Sbjct: 294 ETWSMVLALRLGEFQLL-RADGTDPVLILDDVFAELDALRRERLVHLTQDVE-QVLITVA 351

Query: 350 TDKSVFDSLNETAKF 364
               +   L +  + 
Sbjct: 352 VPDDLPPDLGDIHRI 366


>gi|295133310|ref|YP_003583986.1| DNA replication and repair protein RecF [Zunongwangia profunda
           SM-A87]
 gi|294981325|gb|ADF51790.1| DNA replication and repair protein RecF [Zunongwangia profunda
           SM-A87]
          Length = 359

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 88/374 (23%), Positives = 154/374 (41%), Gaps = 26/374 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N  S    FD +    VG NGVGKTN+L++I  L+ G+ +     +  
Sbjct: 1   MHLKHLSLLNYKNLESSSFDFDPKINCMVGHNGVGKTNVLDSIYHLAFGKSYFNPITSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  FF      E  +    I +  +       + ++ N      V E    +    
Sbjct: 61  INHEAD-FFVVDGTFEKNDKEEQILVSAKRG---QKKVIKRNQKPYEKVSEHIGFIPAVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   +    S  RR+F+D ++   D  +   +I++ +++  RN LL        FD 
Sbjct: 117 ISPADRDLIIEGSETRRKFMDGVISQSDSGYLNDLINYSKIVSQRNSLLKYFAANHTFDR 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238
                   Q+ +LG K+   RV+ +     +  +   +   N   + +     L  K   
Sbjct: 177 DTLEVYNLQLNDLGTKLYKKRVDFLQEFVPIFNKRYAEITNNKEPVSIEYKSQLSHK--- 233

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                    +K L D  + D + + T +G H+ DL  +     I    GS G+QK  LV 
Sbjct: 234 -------TLSKLLEDQLQKDMVLQYTSVGTHKDDLSFEIEGHPIK-KFGSQGQQKSFLVA 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS---- 353
           + LA    I   +G  PILLLD++   LDE +   +  +V      QIF++ T       
Sbjct: 286 LKLAQFDFIKKISGVNPILLLDDVFDKLDEQRVAHIVALVATNELGQIFISDTHAERTEK 345

Query: 354 VFDSLNETAKFMRI 367
           V    N+T K  ++
Sbjct: 346 VVKESNQTYKIFKL 359


>gi|255535750|ref|YP_003096121.1| DNA recombination and repair protein RecF [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341946|gb|ACU08059.1| DNA recombination and repair protein RecF [Flavobacteriaceae
           bacterium 3519-10]
          Length = 359

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 169/372 (45%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L + +F+N++   L F  Q   FVG+NGVGKTN+L+A+ +LS G+ F   +  + 
Sbjct: 1   MVIQKLQLIQFKNHSQQTLEFSPQINCFVGNNGVGKTNVLDALHYLSVGKSFLGNTDLNN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     FF+   ++   E    I I++      + + ++ ND     + +    L    
Sbjct: 61  IQTDGD-FFAIEGKIYDGEKENIIKIQM---PRDAKKLIKKNDKSYDRMADHIGFLPSVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180
           + P    + S     RR+FLD M+   D  +   +I +++ ++ RN LL       YFD 
Sbjct: 117 ISPYDSNLISDSGESRRKFLDAMISQTDSDYLYNLIQYQKTIQQRNALLKSFAKNRYFDP 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                    +   G  I I R E ++++  LI  Y    +  + ++++    D K     
Sbjct: 177 ENLEIYNEPLIRFGTAIFIKRTEFLDSILPLIQSYYSIISNGNEQVTVDYHSDLKTS--- 233

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                 + + L +    D +   T  G H+ DL+ +    ++    GS G+QK  L+ + 
Sbjct: 234 -----SFEELLNENLDKDRVLTYTSKGIHKDDLVFEMNGNSLKRT-GSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDS-- 357
           L+    I   TG  P+LLLD+I   LD+ +   L  +V  +   QIF+T T+K   +S  
Sbjct: 288 LSQMNRIKELTGKTPVLLLDDIFDKLDDSRVLQLIELVNREHFGQIFITDTNKERTESVV 347

Query: 358 --LNETAKFMRI 367
             +NE +K   I
Sbjct: 348 RKINEESKIFEI 359


>gi|226303493|ref|YP_002763451.1| DNA replication and repair protein RecF [Rhodococcus erythropolis
           PR4]
 gi|259563669|sp|C0ZLE4|RECF_RHOE4 RecName: Full=DNA replication and repair protein recF
 gi|226182608|dbj|BAH30712.1| DNA replication and repair protein RecF [Rhodococcus erythropolis
           PR4]
          Length = 409

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 162/387 (41%), Gaps = 34/387 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++  ++ +FR++ SL L      T+F+G NG GKTN+LE++ +LS     R ++ A +
Sbjct: 1   MFVRRFSLRDFRSWDSLTLDLTPGTTVFLGSNGHGKTNVLESLGYLSTLSSHRVSTDAPM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS S F+    V       +++I +E  + +S R  +IN    R   E+   L+   
Sbjct: 61  IRSGSASAFAGATVVNNG---RELTIDVELIEGKSNRA-RINQSPTRRPREVLGILQSVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179
             P    +  G   +RRR+LD ++ +  PR      D+++++R R+ LL           
Sbjct: 117 FAPEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDKVLRQRSALLKTAGAALRRGS 176

Query: 180 --------SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLT 229
                    S     +  +A  G ++   R+E+++ L+  + E  +          +   
Sbjct: 177 RGGESDNVLSTLEVWDGHLAAHGAQLLAGRLELVHDLAPHLAESYRSIAPESRPASIRYK 236

Query: 230 GFLDGKFDQSFCA------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
             L    D  F              L+E +  +L   R  +      L+GPHR DL +  
Sbjct: 237 SSLGSSLDPEFTDPARISGIDDVAYLEERFHLELAQMRSKEIDRGVCLVGPHRDDLELVL 296

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
            D        S GE     + + LA   L+    G  P+L+LD++ A LD  +R AL   
Sbjct: 297 GDSPAK-GFASHGESWSFALSLRLAGFALL-RADGSDPVLMLDDVFAELDRRRRRALA-T 353

Query: 338 VTDIGSQIFMTGTDKSVFDSLNETAKF 364
           V     Q+ +T           E AKF
Sbjct: 354 VAATAEQVLITAAVPEDVPDELEAAKF 380


>gi|296127873|ref|YP_003635123.1| DNA replication and repair protein RecF [Cellulomonas flavigena DSM
           20109]
 gi|296019688|gb|ADG72924.1| DNA replication and repair protein RecF [Cellulomonas flavigena DSM
           20109]
          Length = 398

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 158/379 (41%), Gaps = 39/379 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y  + L  +   T  VG NG GKTN++EA+ +++     R  S A +
Sbjct: 1   MYVAHLSLTDFRSYPQVELPLEPGITALVGPNGQGKTNLVEAVGYVATLGSHRVPSDAAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+        R + +       +++E    ++ R         R  D L   LR   
Sbjct: 61  VRAGTS---RAVVRAKVVREERSTLVEVEITPGKANRSRVNGGSPGRARDVL-GILRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G    RRRFLD ++  + PR    + D+ER++R R+ LL           
Sbjct: 117 FAPEDLALVKGDPDGRRRFLDELLVQLTPRIAGVLGDYERVLRQRSALLKSAAAATRARA 176

Query: 179 --DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDG 234
             D       +A++A+ G ++ +AR  ++ AL     +  ++ +     + L+    LD 
Sbjct: 177 GADLRTLDVWDAKLAQTGAQVVVARQALVRALQPRAADAYRQVSAGQGELVLTYRSSLDA 236

Query: 235 KFDQSFCAL-----------KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
             D++  AL           +      +   R  +      L+GPHR DL+++       
Sbjct: 237 ALDEAPDALTGAPDVGVELVEARLLDAMGRLRGKEIERGVCLVGPHRDDLVLELGGLPAK 296

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGF------------APILLLDEISAHLDEDKR 331
             + S GE   V + + LA   L+++                 P+L+LD++ A LD  +R
Sbjct: 297 -GYASHGESWSVALALRLASYGLLTHGVDDAGAWSADWGPDGEPVLILDDVFAELDARRR 355

Query: 332 NALFRIVTDIGSQIFMTGT 350
             L  +V     Q+ +T  
Sbjct: 356 ERLAELVAPAR-QVLVTAA 373


>gi|328472402|gb|EGF43269.1| DNA replication and repair protein recF [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 341

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 133/327 (40%), Gaps = 13/327 (3%)

Query: 36  NGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETR 95
           N  GKTN+LEAI  L+  R  R  +  ++ R GS      FARV G       + +LE  
Sbjct: 6   NAQGKTNLLEAIYVLALARSHRTNNDKELIRFGSD-----FARVSGQISRQSGTHQLELI 60

Query: 96  DDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
                +  +I+ +    + +   H  +    P    I  G    RRRF+D     + P++
Sbjct: 61  ISHQGKRARIDRIEQSKLSQYLGHFNVILFAPEDLAIVKGSPAGRRRFIDMEFGQMSPKY 120

Query: 156 RRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
              +  ++  ++ RN  L +       D  +   +   +A  G ++  AR +++  +S  
Sbjct: 121 LYNLSQYKTFLKQRNAYLKQLKYHQAKDLVYLDVLTDSLAAFGAELITARAKLLQTMSDY 180

Query: 212 IMEYVQKENFPHIKLSLTG--FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
                Q       KL       +     Q    + E         +  +     +L+GPH
Sbjct: 181 AATIQQDITKGREKLQFAYQTQVAADLRQDSEQVYEALGALFAKQQSREIEQGTSLVGPH 240

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           R D++    DK +    GS G+Q+   + + LA   L+ + TG  P+LLLD++ + LD  
Sbjct: 241 RDDVLFIVNDKDV-ANFGSQGQQRTTALAVKLAEIDLMKDQTGEYPVLLLDDVLSELDAI 299

Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFD 356
           ++  L + +     Q F+T T      
Sbjct: 300 RQTHLLKAI-QTKVQTFLTTTSLDGIQ 325


>gi|256820016|ref|YP_003141295.1| DNA replication and repair protein RecF [Capnocytophaga ochracea
           DSM 7271]
 gi|256581599|gb|ACU92734.1| DNA replication and repair protein RecF [Capnocytophaga ochracea
           DSM 7271]
          Length = 373

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 150/355 (42%), Gaps = 20/355 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  ++N  S    F      FVGDNGVGKTN+L+AI  L   + +   S    
Sbjct: 2   MFLKQISVVNYKNILSQAYAFSPTINCFVGDNGVGKTNLLDAIYHLGMAKSYFTTSAVQN 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHLRIS 123
            R G       F  +EG     +   ++     +  + +   N      + +      + 
Sbjct: 62  VRHGEE-----FYLIEGQFRQEEREEQIVCSLKKGQKKVMKHNGKAYERLADHIGKYPMV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFD 179
            + PS   +    S  RR+FLD ++   D  +   ++ + R +  RN LL +    G F 
Sbjct: 117 LISPSDRDLIVEGSETRRKFLDSVISQTDRAYLELLLRYNRTLLQRNTLLKQMTEGGVFS 176

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                  + Q+A LG  I   R   +     +  E     +    ++SL    D    QS
Sbjct: 177 LETLHIYDEQLAPLGQHIYEKRRTFMEEFLPIFSEQYAYISGGKERVSLHY--DSSLHQS 234

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                 + A +L +  + D  ++ T  G H+ DL+ +     +   +GS G+QK  L+ +
Sbjct: 235 ------DLATQLVENTERDRSAQYTTAGIHKDDLLFEIEGYPMK-KYGSQGQQKSFLIAL 287

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGTDKS 353
            L+   ++  + G  PI+LLD+I   LD+ +   L ++VT     Q+F+T T   
Sbjct: 288 KLSQFEVLKQSLGITPIVLLDDIFDKLDDTRVTQLVQLVTQKHFGQLFITDTHPQ 342


>gi|260063479|ref|YP_003196559.1| DNA replication and repair protein RecF [Robiginitalea biformata
           HTCC2501]
 gi|88782923|gb|EAR14097.1| DNA replication and repair protein RecF, ABC family ATPase
           [Robiginitalea biformata HTCC2501]
          Length = 359

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 160/372 (43%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  ++N+ S    FD++    VG NG+GKTN+L+AI  L+ G+ +        
Sbjct: 1   MHLNRLSLLNYKNFESRDFSFDSKINCLVGPNGIGKTNVLDAIYHLAFGKSYFNPVTTQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G   FF      +       I    +       + L+ ND     + +    + +  
Sbjct: 61  IRHGED-FFVIDGVFDKEGEAEHIVCSFKKGVR---KVLKRNDKAYDRISDHIGTVPLVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   +    S  RR+FLD ++   D  + + ++D+++++  RN LL        FDS
Sbjct: 117 VSPADRDLILEGSETRRKFLDGVISQSDRGYLQDVLDYQKVLSQRNALLKYFAANHRFDS 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                   QMA LG +I+  R   +     +  E  Q  +     + L         Q  
Sbjct: 177 ETLEVYNMQMAALGSRIHGKRAAFMEEFQPIFSEQYQAISGGDETVGLAY-----ESQLA 231

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            A  EE    L    + D + + T  G H+ DL +      I    GS G+QK  L+G+ 
Sbjct: 232 DAPLEEL---LRRSLEKDRVLQYTTQGIHKDDLSMTIEGHPIK-KFGSQGQQKSFLIGLK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTD----KSVF 355
            A  + +       PILLLD+I   LDE++   +  +V  D+  QIF++ T     ++V 
Sbjct: 288 FAQFQFMKARRPGTPILLLDDIFDKLDENRVAHIISLVNRDLFGQIFISDTHADRTEAVV 347

Query: 356 DSLNETAKFMRI 367
             ++++  F+ +
Sbjct: 348 KKIHQSYAFIEL 359


>gi|220910787|ref|YP_002486096.1| recombination protein F [Arthrobacter chlorophenolicus A6]
 gi|254790459|sp|B8H7D1|RECF_ARTCA RecName: Full=DNA replication and repair protein recF
 gi|219857665|gb|ACL38007.1| DNA replication and repair protein RecF [Arthrobacter
           chlorophenolicus A6]
          Length = 402

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 94/394 (23%), Positives = 165/394 (41%), Gaps = 43/394 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++++FR+YA + LV     T+ VG NG+GKTN++EAI +L+     R +S   +
Sbjct: 1   MYLEHLSLTDFRSYAQVDLVLSPGVTVLVGYNGIGKTNLMEAIGYLATLSSHRVSSDGPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+         V   +      ++LE    R+ R  +IN        +L    +   
Sbjct: 61  LRFGTERALVRARLVRNGQTTV---LELEINAGRANRG-RINRSNPVRARDLLGICQTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------F 178
             P    +  G    RRRFLD ++ ++ P H     D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPSNRRRFLDELLASLVPHHAATRSDYDRVLKQRNALLKSARAGRVTAA 176

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKF 236
             +     +  MA+ G ++  AR+E++  L   +     +               L  + 
Sbjct: 177 HEATLDVWDQHMAKAGAELLHARLELVELLRPHLARAYAELTDASKPADAIYRSTLQNQM 236

Query: 237 DQ-------------------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           D                          S   L + Y +   + RK +     +L+GPHR 
Sbjct: 237 DDDGASLGATGRPGPGDAAAAEDLRGLSIEELTQRYVRAFGESRKKELERGISLVGPHRD 296

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLDE 328
           DL +    +A    + S GE   + + + LA   ++   + T G APIL+LD++ A LD 
Sbjct: 297 DLEL-VLGQAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGSAPILILDDVFAELDV 355

Query: 329 DKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNET 361
            +R  L  IV+    Q+ +T   D  + + L+  
Sbjct: 356 QRRRKLAAIVSGAE-QVLVTAAVDADIPEELSGR 388


>gi|313205904|ref|YP_004045081.1| DNA replication and repair protein recf [Riemerella anatipestifer
           DSM 15868]
 gi|312445220|gb|ADQ81575.1| DNA replication and repair protein RecF [Riemerella anatipestifer
           DSM 15868]
          Length = 360

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 94/373 (25%), Positives = 163/373 (43%), Gaps = 22/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L ++ F+N+      F ++   FVG+NGVGKTNIL+A+ +LS G+ F   S  + 
Sbjct: 1   MIIKKLYLTNFKNHQERVFDFSSEINSFVGNNGVGKTNILDALHYLSVGKSFLGNSDVNN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G   FF+  A V+  E    + I    +   + + ++ ND     + +    L    
Sbjct: 61  ILTGED-FFTLEAVVDDGEKETILKI---IQSKDAKKLVKKNDKSYARLSDHIGFLPSVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDS 180
           + P    + S     RRRFLD M+  +D  +   ++ +++ ++ RN LL       YFD 
Sbjct: 117 ISPYDANLISDSGESRRRFLDAMISQVDAEYLHSIMQYQKALKQRNALLKSFAKNRYFDK 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 +  + +    I   R   I  L    + +    +    ++ +    D +     
Sbjct: 177 DSLEIYDEPLCQYAGVIFEKRSLFITQLLPTFLHFYNMISNGKEEVDIVYQSDLE----- 231

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              ++  A+ L    + D +   T  G H+ +L  +     +    GS G+QK  L+ + 
Sbjct: 232 ---EQTMAEVLSQNVEKDRVLTYTSKGIHKDELRFEMSG-DLIKKIGSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS----VF 355
           LA    I   TG  P+LLLD+I   LD+ +   L  +V  +   QIF+T T K     V 
Sbjct: 288 LAQINRIKEITGKTPLLLLDDIFDKLDDRRVAQLIELVNKEHFGQIFITDTHKERTEAVV 347

Query: 356 DSLNETAKFMRIS 368
            ++NE ++   I+
Sbjct: 348 KNINEESRIFEIT 360


>gi|213966253|ref|ZP_03394437.1| DNA replication and repair protein RecF [Corynebacterium amycolatum
           SK46]
 gi|213951105|gb|EEB62503.1| DNA replication and repair protein RecF [Corynebacterium amycolatum
           SK46]
          Length = 399

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 96/389 (24%), Positives = 167/389 (42%), Gaps = 32/389 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I++L++ +FR++  L + F    T+F G NG GKTNI+EA+ +LS     R +  A +
Sbjct: 1   MHIRYLSLRDFRSWPELEVEFTPGITVFTGQNGYGKTNIVEAVGYLSTLGSHRVSMDAPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+PS   S  A  +G E  A + I     +       QIN   ++   EL   ++  
Sbjct: 61  VRSGTPSARISATAVNDGRELTAHLLI-----NPHRANQAQINRTRLKSPRELLGIVKSV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174
           +  P    +  G    RRR++D ++    P      I +++++R +N LL          
Sbjct: 116 FFSPEDLTLVKGEPASRRRYIDDLLALRRPLSAGIRIQYDKILRQKNALLKSAGSTLRRG 175

Query: 175 ----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH---IKLS 227
               EG    S   + +AQ+A++G  +  AR+++I  LS  + E       PH     ++
Sbjct: 176 YSSSEGQAALSTLDTWDAQLAQVGAALMAARMDLIAELSEHVSEAYATL-APHSRPATIA 234

Query: 228 LTGFLD----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
               +D    G        L+     K+ + R  +      L+GPHR DL +        
Sbjct: 235 YAPKVDSLDGGPLPSEPELLEALLLTKMAERRTAEIERGSCLVGPHRDDLDL-ILGNDPA 293

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
               S GE     + + L    L+    G  PIL+LD++ A LD  +R AL  I      
Sbjct: 294 KGFASHGETWSFALALRLGAYFLL-RADGPDPILVLDDVFAELDRHRREALMEIAQQAEQ 352

Query: 344 QIFMTGTDKSVFDSLNETAKFMRISNHQA 372
            +  +   + +  +L + +    +++H  
Sbjct: 353 VLITSAVGEELPQALIDDS---SVTHHTV 378


>gi|68535065|ref|YP_249770.1| recombination protein F [Corynebacterium jeikeium K411]
 gi|260579563|ref|ZP_05847434.1| DNA replication and repair protein recF [Corynebacterium jeikeium
           ATCC 43734]
 gi|97180706|sp|Q4JYF5|RECF_CORJK RecName: Full=DNA replication and repair protein recF
 gi|68262664|emb|CAI36152.1| DNA replication and repair protein RecF [Corynebacterium jeikeium
           K411]
 gi|258602334|gb|EEW15640.1| DNA replication and repair protein recF [Corynebacterium jeikeium
           ATCC 43734]
          Length = 425

 Score =  282 bits (722), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 95/412 (23%), Positives = 165/412 (40%), Gaps = 55/412 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +S +R++  L L      TIF G NG GKTNI+EA+ +L+     R  S A +
Sbjct: 1   MYVSNLRLSNYRSWEELDLQLSPGITIFSGPNGHGKTNIVEALGYLAHLSSHRVNSDAAL 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   +  S  A   G E  A ++I+      R      IN   +    +L   +R +
Sbjct: 61  VRRGEEIANISATAVNNGRELTAHLAIR-----ARGSNRAHINRAAMNSQRDLLGVVRTT 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
              P    +  G   +RR FLD ++ A  PR      D+++ +R RN LL +  F     
Sbjct: 116 LFSPEDLALIRGEPEQRRHFLDAIMVARYPRLAAVKADYDKALRQRNALLRQSAFALRLV 175

Query: 183 -------------------------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
                                        ++Q+A LG +I  ARV++++ L+  + +  Q
Sbjct: 176 VGAPKGASHNLSEDIKADAESALATLDVWDSQLAALGAQIMSARVQIVHDLAPHLQQTYQ 235

Query: 218 K---ENFPHIKLSLTGFLDGKFDQ-----------------SFCALKEEYAKKLFDGRKM 257
               ++ P   +S T  +D +                    S    +    +   + R  
Sbjct: 236 SLAPQSRP-AHMSYTSTIDVELADLGIRLGVSEPNQPTALLSPEIAEATLLQAFANKRPQ 294

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317
           +     TL+GPHR D+ +          + S GE     + + LA A  +    G  P++
Sbjct: 295 EVERGTTLLGPHRDDVNL-ILGHQPAKGYASHGESWSFALSLRLA-AFFMQRGDGVEPVV 352

Query: 318 LLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
           +LD++ A LD  +R  L  +++     +     D+ + ++L + AK   I  
Sbjct: 353 ILDDVFAELDSSRRQHLVDLISSAEQVLITAAVDEDIPEALRDVAKIYTIDE 404


>gi|227831833|ref|YP_002833540.1| DNA replication and repair protein [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183097|ref|ZP_06042518.1| recombination protein F [Corynebacterium aurimucosum ATCC 700975]
 gi|254790471|sp|C3PE74|RECF_CORA7 RecName: Full=DNA replication and repair protein recF
 gi|227452849|gb|ACP31602.1| DNA replication and repair protein [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 392

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 93/380 (24%), Positives = 163/380 (42%), Gaps = 27/380 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L++ +FR++  L L      T+FVG NG GKTNI+EAI + +     R A  A +
Sbjct: 1   MYIRDLDVRDFRSWPELTLRLKPGITLFVGRNGFGKTNIVEAIGYTAHLSSHRVAHDAPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+ +   S  A  +G E  A + IK       +    QIN   ++   EL   ++  
Sbjct: 61  VRQGAHNARISATAVNQGRELTAHLLIK-----PHAANQAQINRTRLKSPRELLGVVKTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176
              P    +  G    RR++LD ++ +  PR      D++++++ RN LL         G
Sbjct: 116 LFSPEDLSLVRGEPAARRQYLDDIIASRTPRLAGVKADYDKVLKQRNALLKSASPSLRRG 175

Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228
           Y DS      +     + Q++ LG ++  AR+ +++ L  LI               +  
Sbjct: 176 YSDSDGASALATLDVWDTQLSSLGAQVIQARLALVDELRELIPAAYAGLAPESRPAAIDY 235

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
              +D    +   A+      +L   R+ +     +L+GPHR DL+++    +      S
Sbjct: 236 KSTVDISDREVIEAM---MLTELATKRQREIERGISLVGPHRDDLVLNL-GTSPAKGFAS 291

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE     + + LA   L+    G  PIL+LD++ A LD  +R  L R+      Q+ +T
Sbjct: 292 HGETWSYAISLRLAEFNLLRQ-DGTDPILILDDVFAELDAKRREKLVRLAAGAE-QVLIT 349

Query: 349 GTDKSVFDSLNETAKFMRIS 368
                      +  +   ++
Sbjct: 350 AAVDEDLPGNLQPIERFTVT 369


>gi|315225438|ref|ZP_07867252.1| recombination protein F [Capnocytophaga ochracea F0287]
 gi|314944711|gb|EFS96746.1| recombination protein F [Capnocytophaga ochracea F0287]
          Length = 374

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 86/355 (24%), Positives = 151/355 (42%), Gaps = 20/355 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  ++N  S   VF      FVGDNGVGKTN+L+AI  L   + +   S    
Sbjct: 2   MFLKQISVVNYKNILSQAYVFSPTINCFVGDNGVGKTNLLDAIYHLGMAKSYFTTSAVQN 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHLRIS 123
            R G       F  +EG     +   ++     +  + +   N      + +      + 
Sbjct: 62  VRHGEE-----FYLIEGQFRQEEREEQIVCSLKKGQKKVMKHNGKAYERLADHIGKYPMV 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFD 179
            + PS   +    S  RR+FLD ++   D  +   ++ + R +  RN LL +    G F 
Sbjct: 117 LISPSDRDLIVEGSETRRKFLDSVISQTDRAYLELLLRYNRTLLQRNTLLKQMAEGGVFS 176

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                  + Q+A LG  I   R   +     +  E     +    ++SL    D    QS
Sbjct: 177 LETLHIYDEQLAPLGQHIYEKRRAFMKEFLPIFSEQYAYISGGKERVSLQY--DSSLHQS 234

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                 + A +L +  + D  ++ T  G H+ DL+ +     +   +GS G+QK  L+ +
Sbjct: 235 ------DLATQLAENTERDRSAQYTTAGIHKDDLLFEIEGYPMK-KYGSQGQQKSFLIAL 287

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGTDKS 353
            L+   ++  + G  PI+LLD+I   LD+ +   L ++VT     Q+F+T T   
Sbjct: 288 KLSQFEVLKQSLGITPIVLLDDIFDKLDDTRVTQLVQLVTQKHFGQLFITDTHSQ 342


>gi|209524390|ref|ZP_03272939.1| DNA replication and repair protein RecF [Arthrospira maxima CS-328]
 gi|209495181|gb|EDZ95487.1| DNA replication and repair protein RecF [Arthrospira maxima CS-328]
          Length = 379

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 92/381 (24%), Positives = 178/381 (46%), Gaps = 19/381 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++ +FRNY +  + FDA  TI VG+N  GK+N+LEA+  LS  +  R     D+
Sbjct: 1   MYLKTLHLRQFRNYEAQDVAFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRVNRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             + + +     A +E   G  D+++ L ++     R + IN   ++   +    L +  
Sbjct: 61  V-LDNHAIAQITATLERDSGTLDLALTLRSQGR---RTVAINGQSVKRHLDFLSILNVVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---DSS 181
                  +  G   ERR +LDR++  ++P +   +  + R++R RN LL  G        
Sbjct: 117 FSSLDLDLVRGSPAERRHWLDRLLIQLEPVYAYMLDQYNRVLRQRNALLKRGPMAGTTPE 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238
             +  +AQ+A  G ++   R  +I  L  L   + Q  +     L++T   + +      
Sbjct: 177 ELAVWDAQLAVAGARVLRRRDRVIERLEPLARMWHQSISGSRETLNITYQPNIEPPSKQQ 236

Query: 239 ------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                     +++ +  K+      +     TL+GPHR D+I    ++     +GS+G+Q
Sbjct: 237 QRWSRWPPEQVQQAFLTKISTRAIAERSQGLTLVGPHRDDVIFTI-NQTPARQYGSSGQQ 295

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + +++ + LA  +LI +  G  P+LLLD++ A LD  ++N L + +++   Q  +T T  
Sbjct: 296 RTLVLALKLAELQLIESVIGEPPLLLLDDVLAELDPHRQNQLLQAISE-RFQTLITTTHL 354

Query: 353 SVFDS-LNETAKFMRISNHQA 372
             FD    + ++ + +   + 
Sbjct: 355 GAFDHQWLQQSQILMVEQGKI 375


>gi|108248035|emb|CAK32505.1| hypothetical protein [uncultured microorganism]
          Length = 370

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 84/378 (22%), Positives = 154/378 (40%), Gaps = 21/378 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY-AD 63
           + +    I  ++N A  RL F  +    +G+NG GKTN+L+AI +LS  R F   S  + 
Sbjct: 1   MTLNTATIVNYKNIAEARLEFSPKLNCLIGNNGQGKTNVLDAIYYLSMCRSFASTSDNSA 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVDELNKHLRI 122
           V R G P     +  ++G     +  +++     R  R + + +    + + +    L +
Sbjct: 61  VIRHGEP-----YMMLQGSYTRQETPLEISVALQRGKRKVVRRDGKEYQRLSQHIGLLPV 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             + P    +  G   ERRRF+D ++   D  +   +I + + +  RN ++ +   D   
Sbjct: 116 VMVSPMDWDLVRGSGEERRRFMDLIISQNDNEYLDALIRYNKAVEQRNAMIKKEMRDPLL 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             ++E  MA+    I+  R + +     + M Y       +  +SL              
Sbjct: 176 YETVEQAMAQHAALIHQRRSQWVEQFLPIFMHYYHAVAGDNETVSLHYKSHLNDGT---- 231

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L   R+ D +   T  G HR D+ +   D  +    GS G+ K   + +  A
Sbjct: 232 ----MQEHLAATRERDLIIGHTTRGIHRDDIELMLDDYPMRHT-GSQGQCKTYTIALRFA 286

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL--- 358
               +       PILLLD+I   LD  +   +  +V +D   QIF+T T+++  D +   
Sbjct: 287 QFDFLKANNATVPILLLDDIFDRLDASRVERIVDVVSSDRFGQIFITDTNRTHLDEIVAR 346

Query: 359 -NETAKFMRISNHQALCI 375
                  M++ N     +
Sbjct: 347 HGGGHCLMQVENGNVTTL 364


>gi|229491171|ref|ZP_04384999.1| DNA replication and repair protein RecF [Rhodococcus erythropolis
           SK121]
 gi|229321909|gb|EEN87702.1| DNA replication and repair protein RecF [Rhodococcus erythropolis
           SK121]
          Length = 409

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 162/387 (41%), Gaps = 34/387 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++  ++ +FR++ SL L      T+F+G NG GKTN+LE++ +LS     R ++ A +
Sbjct: 1   MFVRRFSLRDFRSWDSLTLDLTPGTTVFLGSNGHGKTNVLESLGYLSTLSSHRVSADAPM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS S F+    V       +++I +E  + +S R  +IN    R   E+   L+   
Sbjct: 61  IRSGSASAFAGATVVNNG---RELTIDVELIEGKSNRA-RINQSPTRRPREVLGILQSVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179
             P    +  G   +RRR+LD ++ +  PR      D+++++R R+ LL           
Sbjct: 117 FAPEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDKVLRQRSALLKTAGAALRRGS 176

Query: 180 --------SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLT 229
                    S     +  +A  G ++   R+E+++ L+  + E  +          +   
Sbjct: 177 RGGESDNVLSTLEVWDGHLAAHGAQLLAGRLELVHDLAPHLAESYRSIAPESRPASIRYK 236

Query: 230 GFLDGKFDQSFCA------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
             L    D  F              L+E +  +L   R  +      L+GPHR DL +  
Sbjct: 237 SSLGSSLDPEFTDPARISGIDDVAYLEERFHHELAQMRSKEIDRGVCLVGPHRDDLELIL 296

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
            D        S GE     + + LA   L+    G  P+L+LD++ A LD  +R AL   
Sbjct: 297 GDSPAK-GFASHGESWSFALSLRLAGFALL-RADGSDPVLMLDDVFAELDRRRRRALA-T 353

Query: 338 VTDIGSQIFMTGTDKSVFDSLNETAKF 364
           V     Q+ +T           E AKF
Sbjct: 354 VAATAEQVLITAAVPEDVPDELEAAKF 380


>gi|325105363|ref|YP_004275017.1| DNA replication and repair protein RecF [Pedobacter saltans DSM
           12145]
 gi|324974211|gb|ADY53195.1| DNA replication and repair protein RecF [Pedobacter saltans DSM
           12145]
          Length = 368

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 156/377 (41%), Gaps = 23/377 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  F+NY    L F      F GDNG GKTN+L+AI +L+  + +     +  
Sbjct: 1   MYLKNLSLINFKNYDEAELSFSEGANAFSGDNGAGKTNLLDAIHYLALCKSYFNPIDSQQ 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F       +  E +    +K         +  + N    + + +      +  
Sbjct: 61  IKQEQDFFMIQGVFDKNTEEIVACGVK-----RNQKKQFKRNKKEYQRLADHIGLFPLVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
           + P+   +    S ERR+F+D ++   DP++   +I + + +  RN LL      G +D 
Sbjct: 116 ISPNDVSLILDGSEERRKFIDNVISQTDPKYLDELIIYNKNLLNRNSLLKNIAETGKYDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                ++ Q+   G  I   R   +     +  ++         K+ L            
Sbjct: 176 YLLEILDEQLVNSGRIIFEKRAAFMERFVPIFNQHYSYLTDDAEKVELIY--------DS 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                ++ + L    + D + +RT  G H+ +LI    +  +    GS G+QK  L+ + 
Sbjct: 228 PLQSGDFQELLQKSIEKDRILQRTTTGIHKDELIFSVHEMPLK-KFGSQGQQKSFLIALK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS----VF 355
           LA    +    GF P+LLLD+I   LD+ +   L ++V+ D   QIF+T T+      VF
Sbjct: 287 LAKYSFLYQEKGFKPLLLLDDIFDKLDDKRITKLMKMVSEDDFGQIFITDTNPERLKRVF 346

Query: 356 DSLNETAKFMRISNHQA 372
           + ++       I+N Q 
Sbjct: 347 NDISVALNLFHINNQQV 363


>gi|188989399|ref|YP_001901409.1| recombination protein F [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167731159|emb|CAP49331.1| DNA replication and repair protein [Xanthomonas campestris pv.
           campestris]
          Length = 397

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 146/370 (39%), Gaps = 9/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++     +   +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 24  MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSFRGRVRDGL 83

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G           E      + + +   R        +++   +  +  L   L +  
Sbjct: 84  IRQGGQDLEIFVEWRERAGDSTERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 143

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 144 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPQMLD 202

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R++ +  L   ++        P + LS   F  G          
Sbjct: 203 AWDHELAESGETLTSRRLQYLERLQERLVPVATAI-APSLGLSALTFAPGWRRHEVS--- 258

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T  GPHR+D    +       A  S G+ K+  +   LA A
Sbjct: 259 --LADALLLARERDRQNGYTSQGPHRADWAPLFDALPGKDAL-SRGQAKLTALACLLAQA 315

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
              ++  G  PI+ LD++ + LD   +  + + +    +Q+ +T T+         +T  
Sbjct: 316 EDFAHERGEWPIMALDDLGSELDRHHQARVIQRLASAPAQVLITATELPPGLADAGKTLH 375

Query: 364 FMRISNHQAL 373
              + + Q +
Sbjct: 376 RFHVEHGQLV 385


>gi|226362898|ref|YP_002780678.1| recombination protein F [Rhodococcus opacus B4]
 gi|254790485|sp|C1B7T0|RECF_RHOOB RecName: Full=DNA replication and repair protein recF
 gi|226241385|dbj|BAH51733.1| DNA replication and repair protein RecF [Rhodococcus opacus B4]
          Length = 410

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 165/392 (42%), Gaps = 39/392 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++ +FR++ +L L      T+FVG NG GKTN+LEA+ +LS     R +S A +
Sbjct: 1   MFVRALSLRDFRSWDALGLNLRPGCTVFVGPNGHGKTNVLEALGYLSTLSSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+   F+    V       ++++ LE  + +S R  +IN    R   E+   L+   
Sbjct: 61  IRTGTAQAFAGATVVNTG---RELTVDLELNEGKSNRA-RINQSPTRRPREILGILQTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174
             P    +  G   +RRR+LD ++ +  PR      D+ER++R R+ LL           
Sbjct: 117 FAPEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYERVLRQRSALLKTAGGALRRSS 176

Query: 175 --------EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--I 224
                   +G    +     +  +A  G ++   R+ +++ L+  + E  Q         
Sbjct: 177 RGGGRPSEDGASALATLEVWDGHLAAHGAQLLAGRLHLVHDLAPHLAESYQSLAPESRPA 236

Query: 225 KLSLTGFLDGKFDQSFCA------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
            +     L       F A            L+E + ++L   R  +      L+GPHR D
Sbjct: 237 SIRYRSSLGSSLPPEFTAPARAPEAGDIAFLEERFLQELSVMRSKEIERGVCLVGPHRDD 296

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           L +   D        S GE     + + LA   L+    G  P+L+LD++ A LD  +R 
Sbjct: 297 LELHLGDTPAK-GFASHGESWSFALSLRLAGFALL-RADGSDPVLMLDDVFAELDRKRRR 354

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           AL ++  D   Q+ +T           +  +F
Sbjct: 355 ALAKVALDAE-QVLITAAVPEDVPEELDAVRF 385


>gi|88803287|ref|ZP_01118813.1| DNA replication and repair protein RecF, ABC family ATPase
           [Polaribacter irgensii 23-P]
 gi|88780853|gb|EAR12032.1| DNA replication and repair protein RecF, ABC family ATPase
           [Polaribacter irgensii 23-P]
          Length = 359

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 92/372 (24%), Positives = 159/372 (42%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  F+N  +    F  +   FVG+NGVGKTNIL+AI +LS  + +  +     
Sbjct: 1   MYLKKISLLNFKNLEAQSFDFQQKINCFVGNNGVGKTNILDAIYYLSFAKSYFNSVAIQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ SFF              I   L+       + L+ N        E    L +  
Sbjct: 61  IRHGA-SFFMVEGDYVIDHRNEKIVCSLK---KGQKKVLKRNGKSYEKFSEHIGQLPLVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   + +  S  RR+F+D ++   +  +   ++ + +++  RN LL        FD+
Sbjct: 117 ISPADRDLVTEGSDTRRKFIDGVISQQNKNYLLDLLAYNKVLTQRNALLKYFAANRTFDA 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              S  +AQ++E G +I   R   +     +  E  Q  +    ++ L  +     D S 
Sbjct: 177 LNLSVYDAQLSEYGTRIYEVRKAFLEKFIPIFNEKYQVISNDKERVDLV-YKSQLNDFSM 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            +L       L    + D + + T  G H+ DL  +  D  I    GS G+QK  L+ + 
Sbjct: 236 NSL-------LQKSLEKDKILQYTTAGTHKDDLSFEIGDYPIK-KFGSQGQQKSYLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL- 358
            A    I   +   PILLLD+I   LDE +   +  +V  D   QIF+T T     +++ 
Sbjct: 288 FAQFEFIKQQSNVVPILLLDDIFDKLDESRVLQIINLVNNDEFGQIFITDTHSERTENIV 347

Query: 359 ---NETAKFMRI 367
              N+  K  ++
Sbjct: 348 KQSNKPYKIFKL 359


>gi|291543408|emb|CBL16517.1| recF protein [Ruminococcus sp. 18P13]
          Length = 370

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 154/377 (40%), Gaps = 15/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L    FRN   ++L  D ++ + VG N  GKTN+LEAI  L+  R FR     D+
Sbjct: 1   MHLTGLEAEHFRNLEHIQLEPDPRYNLIVGQNAQGKTNLLEAIWLLTGCRSFRGVRERDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A     +   +  I    +     + + +N V +R    L    +   
Sbjct: 61  VSFDQEVMRMQAAF---RDSRREQHITYAIQKSSREKKITLNGVPLRGGSRLFAQFQCVV 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    +  GL  +RR FLD     I P++   +  FE L   RN++L     G     
Sbjct: 118 FTPDDTMLIKGLPDKRRNFLDLCCAQIRPKNMDVLRRFENLTIQRNQVLRSIGAGNGTPL 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
             +  +AQ+A  G  ++  R   +   + +             +L++        D    
Sbjct: 178 DLAIWDAQLAVAGAHLSHIRHSYVQRFAPVCARLYNIITGGREQLTVEYQSGMYRDYEMP 237

Query: 242 A-----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 +++ Y +KL      D     T IG  R DL+     K +    GS G++K   
Sbjct: 238 ETVTEPMQDYYLRKLTMSSTDDIRLGYTSIGASRDDLLFKINGKPVR-DFGSQGQKKSTA 296

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA A +  ++ G +P++LLD++   LD+ ++  ++ IV ++  Q+F+T  ++    
Sbjct: 297 LVLKLAQAEIYRHSQGQSPVVLLDDVMGELDKSRQELVYSIVQEM--QVFITTCNEGAVL 354

Query: 357 SLNETAKFMRISNHQAL 373
             ++    + I N + L
Sbjct: 355 G-SDRGMRITIENGKIL 370


>gi|159035678|ref|YP_001534931.1| recombination protein F [Salinispora arenicola CNS-205]
 gi|189039637|sp|A8LVH1|RECF_SALAI RecName: Full=DNA replication and repair protein recF
 gi|157914513|gb|ABV95940.1| DNA replication and repair protein RecF [Salinispora arenicola
           CNS-205]
          Length = 376

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 91/382 (23%), Positives = 165/382 (43%), Gaps = 23/382 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y  + +  +    + VG NGVGKTN++EA+ +++     R A+ A +
Sbjct: 1   MYVRRLELVDFRSYERVGVDLEPGANVLVGHNGVGKTNLIEALGYVATLDSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+ +     A V       ++ I+LE    R+ R  ++     R   ++   LR+  
Sbjct: 61  VRMGAGAAVIRCAVVHEG---RELLIELEIVPGRANRA-RLGRSPARRARDVLGALRLVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRR+LD ++    PR+     D+ER++R RN LL   Y       
Sbjct: 117 FAPEDLELVRGDPAERRRYLDDLLVLRQPRYAGVRADYERVVRQRNALLRTAYLARKTGG 176

Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
               D S  +  +  +A  G ++   R++++ AL+  +               +      
Sbjct: 177 TRGGDLSTLAVWDDHLARHGAELLAGRLDLVAALAPHVTRAYDAVAAGTGAAGIAYRPSV 236

Query: 235 KFDQSFCA---LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +          L    +  L  GR  +     TL+GPHR DL +          + S GE
Sbjct: 237 ELPTPTTDRADLTAALSAALAAGRSAEIERGTTLVGPHRDDLTLTLGPLPAK-GYASHGE 295

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350
              + + + LA   L+    G  P+L+LD++ A LD  +R+ L ++V D  SQ+ +T   
Sbjct: 296 SWSLALALRLAGYDLL-RVDGIEPVLVLDDVFAELDTGRRDRLAQLVGDA-SQLLVTCAV 353

Query: 351 DKSVFDSLNETAKFMRISNHQA 372
           ++ V   L        +   + 
Sbjct: 354 EEDVPARL--RGARFVVRGGEV 373


>gi|311696596|gb|ADP99469.1| DNA replication and repair protein recF [marine bacterium HP15]
          Length = 375

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 89/380 (23%), Positives = 161/380 (42%), Gaps = 22/380 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +       FRN +S  + F +   +  G+NG GKT++LEAI +L  GR FR   +  V
Sbjct: 1   MALVKFQTENFRNLSSAPVSFSSSFNMLYGENGSGKTSVLEAIGYLGLGRSFRVNRHQAV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADIS-------IKLETRDDRSVRCLQINDVVIRVVDELN 117
              G            G++     S       + +     +    L+++   +R +  L 
Sbjct: 61  VSHGEQRLTVFGGLDHGLDSRRHGSETDLVHRLGISRDVGQKETMLRVDGEAVRSLSALA 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           KHL +S + P +  + +G   +RR+FLD +VF ++P         +R+   RN+ L  G 
Sbjct: 121 KHLPVSVIDPGVFDVVAGGPGKRRQFLDWLVFHVEPSFGSLWQQCQRVTSQRNQTLRNGR 180

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSLTGFLDGKF 236
            D +     + Q A L  +I  AR            + V++   P    L L  +     
Sbjct: 181 LDEALMRVWDHQYATLSERITEARAGTFGRFKLAFEKLVREVEVPWTEGLKLEYYPGWDV 240

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
            +    L       L D R  +     TL GP+R+D+ + +  + +     S G+QK ++
Sbjct: 241 SRPLAEL-------LVDHRDQERKVGHTLYGPNRADIRLKFQGRPVAETF-SRGQQKTLV 292

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + +A   ++S+  G     LLD+I+A LDE  R  L   +  +  Q+F+T  ++ + D
Sbjct: 293 ILMKIAQGMVLSDM-GKQVTFLLDDINAELDEGHRAMLAIRLQALRCQVFITSIERPMVD 351

Query: 357 SL-----NETAKFMRISNHQ 371
            L         +   + + +
Sbjct: 352 QLWPEGNAPDYRLFHVEHGK 371


>gi|332533698|ref|ZP_08409557.1| DNA recombination and repair protein RecF [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036862|gb|EGI73323.1| DNA recombination and repair protein RecF [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 364

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 83/375 (22%), Positives = 159/375 (42%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRN  +L L       I  G+NG GKT++LEAI +LS G+ FR   +  +
Sbjct: 1   MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTPKHKSI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123
                  F      + G + + D+SI +     ++    L+I     R + EL + + + 
Sbjct: 61  IAHQQEQFV-----IHGRKTIHDLSIPIGISKTQTGETNLKIQGKASRRISELAQLMPVQ 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-SW 182
            + P    +F G   ERR+FLD  +F ++         F ++++ RN LL     +    
Sbjct: 116 IITPESYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKTKPKNYFDQ 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + +   L  +IN  R+  I+       + +  E      L+L   L+  F   +  
Sbjct: 176 IKFWDKEFVRLAEEINKLRLAYISRFKQQFFDKMCAE------LTLVRDLEMTFSAGWKE 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E  A  L    + D+    T  GPH++D        ++     S G+ K++L  + + 
Sbjct: 230 T-ESLADALEQNFERDARQGFTSKGPHKADFSFSVAGNSVENTF-SRGQLKLLLYALKVT 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ----IFMTGTDKSVFDSL 358
              LI + T    ILL+D++ + L ED +  + +++    SQ      ++ +  +V + +
Sbjct: 288 QNSLIESETDKQSILLIDDLPSELGEDTKEKVGQLLAHCSSQIFISSILSESISAVVEPM 347

Query: 359 NETAKFMRISNHQAL 373
               +   + +   +
Sbjct: 348 QRELQMFHVKHGNLI 362


>gi|294665501|ref|ZP_06730784.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292604704|gb|EFF48072.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 368

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 146/369 (39%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MHVVRLSIHRLRRFQTVELHPSSALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+          EG     + + +   R        +++   +  +  L   L +  
Sbjct: 61  IQQGANDLEVFVEWKEGGGAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLTLWRRYARALKQRNALLKQG-AQPRLLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R+  +  L   ++        P + LS   F  G          
Sbjct: 180 AWDNELAESGENLTSRRMRYLERLQDRMVPVADAI-APALGLSALTFAPGWKRHEVS--- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T  GPHR+D +  +       A  S G+ K+  +   LA A
Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWMPSFLALPAKDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
              +   G  P++ LD++ + LD   +  + + +    +Q+ +T T+            +
Sbjct: 293 EDFAFERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATETPPGLADAAARLQ 352

Query: 364 FMRISNHQA 372
              + + Q 
Sbjct: 353 QFHVEHGQI 361


>gi|90408444|ref|ZP_01216604.1| recombination protein F [Psychromonas sp. CNPT3]
 gi|90310428|gb|EAS38553.1| recombination protein F [Psychromonas sp. CNPT3]
          Length = 360

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 89/372 (23%), Positives = 158/372 (42%), Gaps = 14/372 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I +FRN  S  L F+ Q  +  GDNG GKT +LEAI FL  GR FR      +
Sbjct: 1   MPITKLVIHQFRNIHSATLHFNKQINVITGDNGSGKTALLEAIYFLGLGRSFRSHLSNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P F   FA ++       I +K   +  +    L+IN  +   + +L +HL +  
Sbjct: 61  ITHEHPEFI-LFAEIDEQGVQVPIGLK---KTRKGESILKINTRIATKLADLTQHLPLQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + SG    RR FLD  VF  DP   +     +RL++ RN  L +    +    
Sbjct: 117 ITPDSINLLSGSPKNRRAFLDWGVFYHDPLFYQTWARIKRLLKQRNAALKQCKTYNE-LQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++  L  +I+  R      L  LI + +  +  P   + ++ F        +    
Sbjct: 176 LWDNELCFLSTEISDQRQRYFQQLIPLIEKTIA-DFLPEFSIKMSFFC------GWDNTN 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +   +   D  + D     T  GP ++D+        +     S G+ K+ +  + LA  
Sbjct: 229 KSLQQYFIDNFERDKQLGYTTAGPQKADIRFKIGSYPLADVL-SRGQLKLFVYALRLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363
             ++N      + L+D+ S+ LD+ K+  L + +    +Q+F++  DK+  ++L  +   
Sbjct: 288 LFLNNVNNKKCVFLIDDFSSELDQSKQQILAKHIIQSDAQLFISVIDKNHIENLFEQQCS 347

Query: 364 FMRISNHQALCI 375
              + + +   I
Sbjct: 348 VFHVKHGKITNI 359


>gi|90019652|ref|YP_525479.1| RecF protein [Saccharophagus degradans 2-40]
 gi|123278091|sp|Q21PV3|RECF_SACD2 RecName: Full=DNA replication and repair protein recF
 gi|89949252|gb|ABD79267.1| DNA replication and repair protein RecF [Saccharophagus degradans
           2-40]
          Length = 367

 Score =  281 bits (720), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 89/373 (23%), Positives = 169/373 (45%), Gaps = 18/373 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            +  L + +FRN   + +       +  G+NG GKT++LEAIS L+  R FR   Y  + 
Sbjct: 3   HLSNLKVQQFRNLGLVDITPSPTLNLVYGENGSGKTSLLEAISVLAHCRSFRTHKYRRLI 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +  + + F+ FA VEG +    + ++ E     + +   ++ +  +   +L  +L +  +
Sbjct: 63  Q-DTTTAFTVFATVEGSDAFK-VGVQREWSGKSTAK---LDGLSAKSSAQLATNLPVQII 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
                 +  G S  RR+F D +VF +    +    ++ + ++ RN LL       S    
Sbjct: 118 DAHTFALLEGGSKARRKFFDWLVFHVKHEFKTAWANYVKCVKQRNSLLRHDKIAYSDLRP 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLDGKFDQSFCALK 244
            + Q+A L   I+  RVE I  L       + + +   ++ L+L      K  +      
Sbjct: 178 WDEQIAGLAATIDECRVECITPLIQAFKALMGECKFADNVDLTLAYQPGWKEGEL----- 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             + K+L      D     T++GPH+SDL +   + +  +   S G+QK V+  + +A A
Sbjct: 233 -SFPKQLEQAFARDRKLGYTILGPHKSDLKIT-ANGSPAVEVLSRGQQKAVINALHIAEA 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-----N 359
           ++     G  P+ LLD++ + LD +    L   ++++G+Q+F+TG D +   S+     N
Sbjct: 291 QVYKTQIGRTPVFLLDDMPSELDANHIAILSGWLSNLGAQVFVTGVDANKLASVWPLQKN 350

Query: 360 ETAKFMRISNHQA 372
           E  K   +   + 
Sbjct: 351 EAIKMFHVKQGEV 363


>gi|163838773|ref|YP_001623178.1| recombination protein F [Renibacterium salmoninarum ATCC 33209]
 gi|189039634|sp|A9WR32|RECF_RENSM RecName: Full=DNA replication and repair protein recF
 gi|162952249|gb|ABY21764.1| DNA replication and repair protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 398

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 97/399 (24%), Positives = 169/399 (42%), Gaps = 43/399 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++++FR+Y    L  +    +F+G NG+GKTN++EA+ +L+     R +    +
Sbjct: 1   MYLEQLSLTDFRSYQQADLGLEPGVNVFIGSNGLGKTNLVEALGYLASLSSHRVSQDGPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+        R   + G   + +++E    R+ R  +IN        E+    R   
Sbjct: 61  IRFGAEQALI---RGNLVRGTQRLGLEVEINASRANRA-RINRANPVRAREILGLCRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G    RRRFLD ++ ++ PR      D+ER+++ RN LL      S    
Sbjct: 117 FAPEDLSLVKGDPGNRRRFLDDLLQSLHPRFAGLRADYERVLKQRNALLKSARGHSRSRQ 176

Query: 181 -------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLS 227
                  S     +   A    ++  AR++++  L   +    Q      KE     + S
Sbjct: 177 APSADFLSTIEVWDQHFANHAAQLLSARLKVLEQLKPEMSRAYQELTDGSKELSARYRSS 236

Query: 228 LTGFLDGKFD--------------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
           L G+ +   D               S  +L E Y   L   R+ +     TLIGPHR ++
Sbjct: 237 LDGYQEDSDDAAEIHDDEAASLVSASVESLTEHYLLALAAVRQREIERGLTLIGPHRDEV 296

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS---NTTGFAPILLLDEISAHLDEDK 330
            +    +A    + S GE   V + + LA   ++       G  PIL+LD++ A LD  +
Sbjct: 297 ELGL-GQAPARGYASHGETWSVALALRLASYYVLKADQEIDGADPILVLDDVFAELDSSR 355

Query: 331 RNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368
           R+ L  +V     Q+ +T   D  V   L  + + +R+S
Sbjct: 356 RSKLAHMVAGAE-QVLVTAAVDDDVPAEL--SGRRIRVS 391


>gi|284988633|ref|YP_003407187.1| DNA replication and repair protein RecF [Geodermatophilus obscurus
           DSM 43160]
 gi|284061878|gb|ADB72816.1| DNA replication and repair protein RecF [Geodermatophilus obscurus
           DSM 43160]
          Length = 399

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 161/388 (41%), Gaps = 25/388 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRN+  + L      T+FVG NG GKTN++EA+ +L+     R A  A +
Sbjct: 1   MYLRHLQLGSFRNWDRVDLALRPGPTVFVGRNGEGKTNLVEAVGYLATMGSHRVAGDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       A         ++ +++E    R+ R +++N   +    EL   ++   
Sbjct: 61  VRQGASQAVVRAAL---RREDRELLVEIEINPGRANR-VRVNRAPLPRPRELLGLVKSVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G   ERRRFLD ++ +  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLVLVRGDPAERRRFLDDLLVSRTPRLAGVRSDYDRVLKQRNALLKTARMARGDAL 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--------- 231
           +     +  + +LG ++  AR+ ++  L+  +             ++  G+         
Sbjct: 177 ATLDVWDGHLVDLGGQLLAARLRLVADLAPHVARAYAGVAGADAAVAALGYASTVPLAGD 236

Query: 232 ----LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
                +G        L     +++ + R  +     TL+GPHR DL++            
Sbjct: 237 GTPVAEGTPLPDAAELSAALRERVAERRGDEVDRGMTLVGPHRDDLVISLGSTPAK-GFA 295

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE   + + + L    L+    G  PIL+LD++ A LD D+R AL  +       +  
Sbjct: 296 SHGESWSLALALKLGCFELL-RADGDEPILVLDDVFATLDADRRAALATVARSAEQSLVT 354

Query: 348 TGTDKSVFDSLNETAKFMRISNHQALCI 375
                 V   L   +  ++++  QA+ +
Sbjct: 355 AAVLDDVPAEL--RSTVVQVAGGQAVPL 380


>gi|86131710|ref|ZP_01050307.1| DNA replication and repair protein RecF [Dokdonia donghaensis
           MED134]
 gi|85817532|gb|EAQ38706.1| DNA replication and repair protein RecF [Dokdonia donghaensis
           MED134]
          Length = 363

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 162/376 (43%), Gaps = 22/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N+ S    FDA+   FVG+NGVGKTN+L+AI  LS G+ +     +  
Sbjct: 1   MILKSLSLINYKNFESKAFTFDAKINCFVGNNGVGKTNVLDAIYHLSFGKSYFNPVTSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  FF      E  E    + +   +      + ++ N  +     +    L +  
Sbjct: 61  INHNAD-FFVIDGLYEKKERDEKVVV---SAKKGQKKVIKRNAKIYDRFADHIGFLPLVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   + +  S  RR+F+D ++   D  +   ++ + +++  RN LL        F++
Sbjct: 117 ISPADRDLITEGSDTRRKFIDGVISQSDKSYLSDLLGYSKILSQRNALLKYFAANNTFNT 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              +    Q+   G  I   R + +   + +  E  +  +     ++LT      ++ S 
Sbjct: 177 DTLAVYNEQLEGFGTPIFEKRQQFLERFAPIFNERYKAISGDTENVTLT------YNSSL 230

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +       L +    D   + T +G H+ DL  +     +    GS G+QK  L+ + 
Sbjct: 231 NTMP--LKHSLTNALAKDRSLQYTSVGIHKDDLQFEINGHPVK-KFGSQGQQKSYLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS----VF 355
           LA    I   +G  P+LLLD+I   LDE++   +  +V T+   Q+F++ T       V 
Sbjct: 288 LAQFDFIKQESGTTPLLLLDDIFDKLDENRVQHIIELVNTNDFGQLFISDTHPERTENVV 347

Query: 356 DSLNETAKFMRISNHQ 371
             ++++ +   +   Q
Sbjct: 348 KKIHQSYELFHLERAQ 363


>gi|118467917|ref|YP_884426.1| recombination protein F [Mycobacterium smegmatis str. MC2 155]
 gi|152060497|sp|A0QND8|RECF_MYCS2 RecName: Full=DNA replication and repair protein recF
 gi|152060498|sp|P0C561|RECF_MYCSM RecName: Full=DNA replication and repair protein recF
 gi|1321896|emb|CAA63251.1| recF [Mycobacterium smegmatis]
 gi|118169204|gb|ABK70100.1| DNA replication and repair protein RecF [Mycobacterium smegmatis
           str. MC2 155]
          Length = 384

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 85/389 (21%), Positives = 160/389 (41%), Gaps = 25/389 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +  + L +++FR++A + L  +   T+FVG NG GKTN++EA+ + +     R A+ A +
Sbjct: 1   MFARHLGLTDFRSWARVDLDLEPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       ++++ LE    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGAERAIVSTIVVNEG---RELAVDLEITSGRANKA-RLNRSPVRSAREILGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179
             P    +  G   +RRR+LD +     P       D+++++R R  LL          D
Sbjct: 117 FSPEDLSLVRGDPGDRRRYLDELATTRRPALAGVRADYDKVVRQRTALLKTAAGARYRGD 176

Query: 180 SS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ------KENFPHIKLSLTG 230
            S        +  +A  G  +  +RV+++  L   + +  Q      +      + S+  
Sbjct: 177 RSVIDTLEVWDGHLAAHGAALVASRVKLVEELQPEVEKAYQLLAPASRPAAIRYRSSVEA 236

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D    +S    +      L   R  +      L+GPHR DL +   D+       S G
Sbjct: 237 IEDAPGPESVEFYEAALLDALARRRDAELERGVCLVGPHRDDLELRLGDQPAK-GFASHG 295

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349
           E   + + + L    L+  + G  P+LLLD++ A LD  +R AL   V     Q+ +T  
Sbjct: 296 ESWSMALALRLGAYELLC-SDGVEPVLLLDDVFAELDTSRRRALA-TVAGSAEQVLVTAA 353

Query: 350 TDKSVFDSLNET---AKFMRISNHQALCI 375
             + + +  +      + +     +   +
Sbjct: 354 VGEDIPEDWDARRVEIRMVEDDGGRVSMV 382


>gi|311742166|ref|ZP_07715976.1| recombination protein F [Aeromicrobium marinum DSM 15272]
 gi|311314659|gb|EFQ84566.1| recombination protein F [Aeromicrobium marinum DSM 15272]
          Length = 373

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 89/379 (23%), Positives = 169/379 (44%), Gaps = 20/379 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FR+Y  L L   A    FVG NG GKTN++EA+ +L+     R A+ A +
Sbjct: 1   MHVARLALHDFRSYTELDLELSAGPVAFVGANGQGKTNLVEAVDYLARLDSHRVAADAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+        R E +       +++E    RS R  ++N   +    ++   LR   
Sbjct: 61  VRAGAE---RAVVRAEVVREDRRALLEVEITPGRSNRA-RVNRGDLPRARDIVGILRTVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---FDSS 181
             P    +  G   +RRRFLD ++    PR      D++R+++ RN LL  G     D S
Sbjct: 117 FSPEDLALVKGDPSDRRRFLDALLVMRLPRLAGVKADYDRVLKQRNALLKSGRNRQVDIS 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFD-- 237
                + ++A LG ++ + R+ +++ L   + +  ++        +  +T       D  
Sbjct: 177 TLDIWDDKLATLGAELLVHRLTLLDDLGPHLAQAYREVATLAAADRRDVTAVYRSATDGV 236

Query: 238 ---QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
              +    ++E   + + + R+ +     +L+GPHR ++++   D      + S GE   
Sbjct: 237 TGTRDVAEIREALLRAVAERRRDELDRGISLVGPHRDEVVLAVGDLPAK-GYASHGESWS 295

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
           + + + LA   L+ +     P+L+LD++ A LD  +R+ L  +V     Q+ +T      
Sbjct: 296 LALALRLASFELLRSEDDD-PVLILDDVFAELDAGRRDHLAALVGSAE-QVLVTAAVAAD 353

Query: 354 VFDSLNETAKFMRISNHQA 372
           V   L  T +  R+++   
Sbjct: 354 VPAGL--TGRRFRVADGTV 370


>gi|301629590|ref|XP_002943921.1| PREDICTED: DNA replication and repair protein recF-like [Xenopus
           (Silurana) tropicalis]
          Length = 367

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/373 (24%), Positives = 158/373 (42%), Gaps = 15/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++++  RN   +      +  I  G NG GKT++LEAI  L   R FR A    V
Sbjct: 1   MSLSRVSVTAVRNLHPVTFSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    +  + F +VE  EG    S+ +  RD +    ++I+    R   +L + L +  
Sbjct: 61  IQYEQLAC-TVFGQVELAEGGHS-SLGIS-RDRQGEFQIRIDGQNARSAAQLAEILPLQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D++  +
Sbjct: 118 INPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAASQA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++     +I+  R   I AL  +  E    E      L+L+ +     D+   A+ 
Sbjct: 178 AWDRELCLASAEIDEYRRAYIKALKPVF-EQTLSELLELEGLTLSYYRGWDKDRELSAV- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L    + D     T  GP R+DL +            S G+QK+V+  + +A  
Sbjct: 236 ------LATSLQRDQQIGHTQAGPQRADLRLRLGAHNAADIL-SRGQQKLVVCALRIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNET 361
            L+S       I L+D++ + LDE  R AL R++ D+  Q+F+T  D  +          
Sbjct: 289 HLVSQARRGQCIYLVDDLPSELDEQHRRALCRLLEDLRCQVFITCVDHELLREGWQTETP 348

Query: 362 AKFMRISNHQALC 374
                +   +   
Sbjct: 349 VALFHVEQGRITQ 361


>gi|197120424|ref|YP_002132375.1| DNA replication and repair protein RecF [Anaeromyxobacter sp. K]
 gi|226737767|sp|B4UJV1|RECF_ANASK RecName: Full=DNA replication and repair protein recF
 gi|196170273|gb|ACG71246.1| DNA replication and repair protein RecF [Anaeromyxobacter sp. K]
          Length = 372

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 160/370 (43%), Gaps = 9/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L++ +FRN A++ L    + T+ +G+NG GKTN+LEAI FL+  +  R    A++
Sbjct: 1   MKLLSLHVQDFRNLAAVALAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+    +     EG  G+  +++++      +    +      R +D+  + L    
Sbjct: 61  VRFGADQG-AVAGDFEGPGGVRRVAVQVAAGGRTATLDGKALGSGAR-LDDYFEGLASVC 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +       RRRFLDR  F   P       ++ R +R RN  L  G  +    +
Sbjct: 119 FSPDDLLLVKAGPDGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRAGPAEVE--A 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSFC 241
           S    +   G ++ + R E++  L+  +     + +    P   L+              
Sbjct: 177 SFREPLVRAGARLLVRRRELVAELAPRLQAAFAEISGPEAPEAHLAYRAAGGVDVAHPEA 236

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +    A  L    + D     T  GPH  DL++    K   + +GS G+Q+ +++ + +
Sbjct: 237 EVAARLAHALEARLERDREKGFTSAGPHMDDLVLALGGKGARL-YGSQGQQRALVLALKI 295

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNE 360
           A    +    G  P+LLLD++S+ LD  K   L   +  + +Q F+T TD+ + + +   
Sbjct: 296 AEIENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTSTDRRLIEPAAGP 355

Query: 361 TAKFMRISNH 370
              F  + + 
Sbjct: 356 DTAFFEVRSG 365


>gi|332798027|ref|YP_004459526.1| DNA replication and repair protein recF [Tepidanaerobacter sp. Re1]
 gi|332695762|gb|AEE90219.1| DNA replication and repair protein recF [Tepidanaerobacter sp. Re1]
          Length = 364

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 95/370 (25%), Positives = 163/370 (44%), Gaps = 13/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN+  L L F     IF GDN  GKTN+LEAI F++  R  R     +V
Sbjct: 1   MYLYNLRLYDFRNFLELDLEFKNGINIFYGDNAQGKTNLLEAIYFITELRATRAFREQEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P  F          G  D  + +     + V+  +          EL+  +   +
Sbjct: 61  IRYDQPLAF-LKGLFSTKAGDIDRQVTIYRNQKKEVKEGEN---KKSRWSELDPSISAVY 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
             P    +  G    RRRF+D +++ I P   + +  ++R++  RN LL           
Sbjct: 117 FSPEDIDLVKGEPSLRRRFIDNLIYRIRPSFYKYLQGYQRVLTQRNTLLKTIKIKPGMTK 176

Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + Q++ELG ++   R++M+  +SSL  +Y +        L ++   +  F  +  
Sbjct: 177 TLDPWDEQLSELGSQLINERLKMLQRISSLSQDYFKTFTHKRNDLRISYRSEIDFS-NPE 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +K +Y  KL   R+ D     T +GPHR D+      K I   + S G+Q++ ++ +  
Sbjct: 236 LIKADYKNKLILNREKDINRSFTSVGPHRDDIDFFIDGKNIK-HYASQGQQRLTVLCLMF 294

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNE 360
           A   L+    G  PILLLD++ + LD  +R  +   +     Q+F+T TD K + + + E
Sbjct: 295 AQRNLLYTEKGEYPILLLDDVMSELDIHRRQLI---LGQENHQVFITTTDLKFIPEEILE 351

Query: 361 TAKFMRISNH 370
            +    I   
Sbjct: 352 KSFLYPIKAG 361


>gi|86738727|ref|YP_479127.1| recombination protein F [Frankia sp. CcI3]
 gi|86565589|gb|ABD09398.1| DNA replication and repair protein RecF [Frankia sp. CcI3]
          Length = 399

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/404 (22%), Positives = 156/404 (38%), Gaps = 45/404 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+Y +L L        FVG NG GKTN++EAIS+++     R A  A +
Sbjct: 1   MHLTHLSLVDFRSYPALDLTLGPGVATFVGGNGQGKTNVIEAISYVATLASHRVAGDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+         V G        +++E    ++ R  ++N   +    ++   L    
Sbjct: 61  VRDGASRAVIRARIVRGDRAAL---VEIEIVPGKANRA-RLNRAPVARPRDIVGLLCTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P    +  G   +RR+FLD ++ A  PR    + D++R+++ R+ LL          G
Sbjct: 117 FAPEDLALVKGDPAQRRQFLDELLIARTPRMAAVLADYDRVLKQRSTLLRTAGTARRAGG 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSS---------------LIMEYVQKENF 221
             D       +  +A  G ++  AR+ +++AL                   ++Y      
Sbjct: 177 QGDLRTLDVWDGYLAAHGAEVLAARLALVDALRPAVAAAYEAVAGAESATALDYRSSVTL 236

Query: 222 PHI------------KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
           P I                              L E     L   R  +     TL+GPH
Sbjct: 237 PDILHASGPPGPPGQPEQPGAGRPDPAAPDRTMLAEAIRADLEAARPREVERGMTLVGPH 296

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           R DL++          + S GE   + + + LA   L+       P+LLLD++ A LD  
Sbjct: 297 RDDLLLSINGLP-ARGYASHGESWSLALALKLASFDLL-RADDREPVLLLDDVFAELDTR 354

Query: 330 KRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372
           +R  L  +V     Q+ +T   +  V   L  T     ++  + 
Sbjct: 355 RRGRLAELVASAE-QVLVTAAVETDVPTEL--TGVRYAVAGGEV 395


>gi|152994046|ref|YP_001338881.1| recombination protein F [Marinomonas sp. MWYL1]
 gi|189039628|sp|A6VR67|RECF_MARMS RecName: Full=DNA replication and repair protein recF
 gi|150834970|gb|ABR68946.1| DNA replication and repair protein RecF [Marinomonas sp. MWYL1]
          Length = 368

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 91/352 (25%), Positives = 164/352 (46%), Gaps = 13/352 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+IS  RN +S+R     Q  + VG NG GKT++LEAI  LS GR FR   +   
Sbjct: 1   MPLVRLDISHVRNLSSVRFEPSPQVNVIVGKNGSGKTSVLEAIHLLSFGRSFRSHKHKTY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  + +    FA++   +G + I + L+   D  +  ++I     + V EL + L +  
Sbjct: 61  IQHENDACI-VFAQLHQKQG-SPIRVGLQRHRDGQI-DVRIQGQRAQSVIELAERLPVQL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P   R+  G    RR+F+D   F  D    +    +++ ++ RN LL  G    S  +
Sbjct: 118 INPDAFRLLEGSPSIRRQFIDWGAFHFDKDFIQAWRGWQKALKQRNTLLRRGKISLSLLA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  LG ++N +R   +  L+   ++ +       + +SL  F            +
Sbjct: 178 AFDQELIRLGEQVNQSRKAYVEKLTPHFVKVLSLLT-TELSVSLQFFQGW-------DAQ 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +  A  +  GR+ D     T  GP R+DL V            S G+QK+V+  + +A  
Sbjct: 230 KNLAMAVEAGRERDIELGYTHTGPQRADLRVKTATGDALDTL-SRGQQKLVVSALKIAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           +L+ +  G   + L+D++ A LD + R  L +++  + SQIF+T  +    D
Sbjct: 289 QLLIDM-GRPLVFLVDDLPAELDANHRQKLCQLLESLNSQIFITSVEPDTTD 339


>gi|213961968|ref|ZP_03390233.1| RecF protein [Capnocytophaga sputigena Capno]
 gi|213955321|gb|EEB66638.1| RecF protein [Capnocytophaga sputigena Capno]
          Length = 360

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 83/354 (23%), Positives = 152/354 (42%), Gaps = 18/354 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  ++N  S    F      FVGDNGVGKTN+L+AI  L   + +   S    
Sbjct: 1   MFLKQISVVNYKNIPSQTYAFSPTINCFVGDNGVGKTNLLDAIYHLGMAKSYFTTSAVQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G   F+    + +       I   L+    + ++    N      + +      +  
Sbjct: 61  VRHGEE-FYLIEGQFQNETREEQIVCSLKKGQKKVMKH---NGKAYERLADHIGKYPMVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
           + PS   +    S  RR+FLD ++   D  +   ++ + R++  RN LL +    G F  
Sbjct: 117 ISPSDRDLIVEGSETRRKFLDSVISQTDRAYLELLLRYNRILLQRNTLLKQMAENGVFSV 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              S  + Q+A LG  +   R   +     +  E     +    +++L    + +  QS 
Sbjct: 177 ETLSIYDEQLAPLGQHLYEKRRAFMEEFLPVFSEQYAYISGGKERVNLQY--ESQLHQS- 233

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                + A  L +  + D  ++ T  G H+ DL+ +     +   +GS G+QK  L+ + 
Sbjct: 234 -----DLATLLRENAERDRSAQYTTSGIHKDDLLFEIEGFPMK-KYGSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGTDKS 353
           L+  +++    G  PI+LLD+I   LD+ +   L ++VT     Q+F+T T   
Sbjct: 288 LSQFKILQQELGITPIVLLDDIFDKLDDTRVTQLVQLVTQKHFGQLFITDTHSQ 341


>gi|325961454|ref|YP_004239360.1| DNA replication and repair protein RecF [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323467541|gb|ADX71226.1| DNA replication and repair protein RecF [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 403

 Score =  281 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 93/395 (23%), Positives = 164/395 (41%), Gaps = 44/395 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++++FR+YA + L      T+ VG NG+GKTN++EAI +L+     R +S A +
Sbjct: 1   MYLEHLSLTDFRSYAQVDLALGPGVTVLVGYNGIGKTNLMEAIGYLATMSSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+         V G +      ++LE    R+ R  +IN        +L    +   
Sbjct: 61  LRFGTDRALVRARLVRGGQITI---LELEINAGRANRG-RINRSNPVRARDLLGICQTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------F 178
             P    +  G    RRRFLD ++ ++ P H     D++R+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPSNRRRFLDELLASLVPHHAATRSDYDRVLKQRNALLKSARAGKFTSA 176

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKF 236
             +     +  MA  G ++  AR+E++  L   +     +               L  + 
Sbjct: 177 HEATLDVWDQHMARAGAELLHARLELVERLRPHLARAYAQLTDESKPADAVYRSTLQNQM 236

Query: 237 DQS--------------------------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
           D                               L E Y +   + R+ +     +L+GPHR
Sbjct: 237 DDDGAALVGAGGTAAGGASAGAEDLLSFGVEQLTERYVQAFAESRRKELERGISLVGPHR 296

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI---SNTTGFAPILLLDEISAHLD 327
            +L +    +A    + S GE   + + + LA   ++   + T G APIL+LD++ A LD
Sbjct: 297 DELEL-VLGQAPAKGYASHGETWSMCLSLRLASYYVMLDDARTGGSAPILILDDVFAELD 355

Query: 328 EDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNET 361
             +R  L  IV+    Q+ +T   D  + + L+  
Sbjct: 356 VQRRRKLAAIVSGAE-QVLVTAAVDADIPEELSGR 389


>gi|298208521|ref|YP_003716700.1| putative DNA replication and repair protein [Croceibacter
           atlanticus HTCC2559]
 gi|83848444|gb|EAP86313.1| putative DNA replication and repair protein [Croceibacter
           atlanticus HTCC2559]
          Length = 359

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 157/373 (42%), Gaps = 24/373 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N+ S    FD++    VG NG+GKTN+L++I  LS G+ +     +  
Sbjct: 1   MHLKQLSLINYKNFESETFEFDSKINCLVGANGIGKTNVLDSIYHLSLGKSYFNPITSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            +         F  ++G     D + K+     R   + ++ N        E    L + 
Sbjct: 61  IKHHED-----FFVIDGEFVKQDRTEKIVVSAKRGQKKVIKRNSKAYERFSEHVGLLPVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179
            + P+   + +  S  RR+F+D ++   D  +   +I + +++  RN LL        F+
Sbjct: 116 IISPADRDLITEGSDTRRKFMDGIISQNDKTYLDNLISYNKVLAQRNALLKYFAANRTFE 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
           SS       Q++    +I   R   + +   +  E  Q  +    +++++     K    
Sbjct: 176 SSTLEVYNEQLSNYASEIFETRTLFLESFIPIFKERYQTISNNKEQVTISYKSQLK---- 231

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               K   A    +  + D   + T +G H+ DL     +  I    GS G+QK  L+ +
Sbjct: 232 ----KGNLASLFEERLQKDLQRQYTTVGTHKDDLDFGIENHPIK-RFGSQGQQKSFLIAL 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358
            LA    I   +   PILLLD++   LDE +   +  +V+     Q+F++ T     +++
Sbjct: 287 KLAQYDFIKAKSKVNPILLLDDVFDKLDEQRVEQIVSLVSTGELGQLFISDTHPDRTEAV 346

Query: 359 ----NETAKFMRI 367
                +  K  R+
Sbjct: 347 VKNTAQDYKMFRL 359


>gi|294627436|ref|ZP_06706020.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598257|gb|EFF42410.1| recombination protein F [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 368

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 146/369 (39%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MHVVRLSIHRLRRFQTVELHPSSALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+          EG     + + +   R        +++   +  +  L   L +  
Sbjct: 61  IQQGANDLEVFVEWKEGGGAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLTLWRRYARALKQRNALLKQG-AQPRLLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R+  +  L   ++        P + LS   F  G          
Sbjct: 180 AWDNELAESGENLTSRRMRYLERLQDRMVPVADAI-APALGLSALTFAPGWKRHEVS--- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T  GPHR+D +  +       A  S G+ K+  +   LA A
Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWMPSFLALPGKDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
              +   G  P++ LD++ + LD   +  + + +    +Q+ +T T+            +
Sbjct: 293 EDFAFERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATETPPGLADAAARLQ 352

Query: 364 FMRISNHQA 372
              + + Q 
Sbjct: 353 QFHVEHGQI 361


>gi|87199175|ref|YP_496432.1| recombination protein F [Novosphingobium aromaticivorans DSM 12444]
 gi|87134856|gb|ABD25598.1| DNA replication and repair protein RecF [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 357

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 142/370 (38%), Positives = 194/370 (52%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FRN+A+ RL       + VG+NG GKTN+LEAIS L+PGRG RRA  A++
Sbjct: 1   MSLTRLTLRDFRNHAATRLEGMRAFNVLVGENGAGKTNVLEAISLLAPGRGLRRAQPAEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+  A +E  +G   I       D    R ++IN V       L + L I+W
Sbjct: 61  AGREGPGGFAIAAEME--DGAVQIGTATSP-DAPGRRSVRINGVEG-PAARLAEWLSITW 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWC 183
           L P+MDRIF+  +  RRRFLDR+V A DP H R    +E  +R RNRLL E    D  W 
Sbjct: 117 LTPAMDRIFAESAGSRRRFLDRLVLARDPGHARNATRYETALRERNRLLGEVAEPDPLWL 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             IEAQMAE G  +  AR E++  LS  ++E V  + F    L     +    D      
Sbjct: 177 DGIEAQMAETGAAMAAARTELVADLSR-VLETVPDQPFARPSLRYASEVPPDAD------ 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L +GR+ D  + R+LIGPHR DL V    K    A  STGEQK +L+ I LAH
Sbjct: 230 --GLRAMLREGRRRDRAAGRSLIGPHRDDLAVLLAAKNAPAADCSTGEQKAMLIAIVLAH 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           A L +       +LLLDEI+AHLD  +R ALF  +   G+Q++MTGT+ + F  +   + 
Sbjct: 288 AGLTAGE--RPRLLLLDEIAAHLDPVRRGALFERLATSGAQVWMTGTEMAPFAQIAGESA 345

Query: 364 FMRISNHQAL 373
              + +    
Sbjct: 346 IWSVRDGAVF 355


>gi|332188891|ref|ZP_08390596.1| DNA replication and repair RecF family protein [Sphingomonas sp.
           S17]
 gi|332011073|gb|EGI53173.1| DNA replication and repair RecF family protein [Sphingomonas sp.
           S17]
          Length = 347

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 138/360 (38%), Positives = 197/360 (54%), Gaps = 17/360 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +++FRN+A L L   A   +  G+NG GKTN+LEA+S L+PGRG RRA+ + + R
Sbjct: 2   LTRLVLTDFRNHADLALNPGAGFVVLTGENGAGKTNVLEAVSLLAPGRGLRRAALSAMAR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G    F   A + G     D+ I          R +          + L   L + WL 
Sbjct: 62  QGGKGGFGVAATLNG-----DVEIATGALPSAPERRVVRVQGAGASANALADWLSVLWLT 116

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSS 185
           P+MDR+F   + ERRRFLDR+V A+ P H      ++  MR RNRLL ++G  D  W S+
Sbjct: 117 PAMDRLFVEPASERRRFLDRLVLALAPAHGMHATRYDAAMRERNRLLASDGPVDPDWLSA 176

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +EA+M E G  ++ ARV  + AL   + E V    F    L+L G               
Sbjct: 177 LEARMVEHGAALDAARVAAVAALDQRLEE-VPDSVFARASLALEG---------EAVDPA 226

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            +A  L  GR+ D+ + RTL+GPHR+DL+V +  K    A  STGEQK +L+GI LAHA 
Sbjct: 227 AFAHALAMGRRRDAAAGRTLVGPHRADLLVTHVAKGQAAALCSTGEQKALLLGIVLAHAD 286

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L++   G AP+LLLDE++AHLD  +R ALF  +   G Q++MTGT+ ++F  +   A  +
Sbjct: 287 LVTERRGAAPVLLLDEVAAHLDPSRRAALFERLAGRG-QVWMTGTEPALFVDVPGEATRI 345


>gi|238061916|ref|ZP_04606625.1| recombination protein F [Micromonospora sp. ATCC 39149]
 gi|237883727|gb|EEP72555.1| recombination protein F [Micromonospora sp. ATCC 39149]
          Length = 377

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 160/370 (43%), Gaps = 21/370 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y  + +  +    I +G NG GKTN++EA+ +++     R A+ A +
Sbjct: 1   MYVRRLELVDFRSYERVGVDLEPGPNILIGANGTGKTNLVEALGYVATLDSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+ S     A V       ++ ++LE    ++ R  ++     R   ++   LR+  
Sbjct: 61  VRLGATSAVIRCAVVHDG---RELLVELEIVPGKANRA-RLGRSPARRARDVLGALRLVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRR+LD ++ +  PR+     D+ER+++ RN LL   Y       
Sbjct: 117 FAPEDLELVRGDPAERRRYLDDLLVSRQPRYAGVRADYERVIKQRNALLRTSYLARKTGG 176

Query: 179 ----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
               D S  +  +  +A  G ++   R+E++ AL   + +             +      
Sbjct: 177 TRGGDLSTLAVWDTHLARHGAELLAGRLELVAALGPHVTKAYDAVAAGRGAAGIAYRPSV 236

Query: 235 KFDQSFCA---LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +          L E     L + R  +     TL+GPHR DL +          + S GE
Sbjct: 237 ELTDPVADRAALAEALLAALAESRSAEVERGTTLVGPHRDDLALTLGPLPAK-GYASHGE 295

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GT 350
                + + LA   L+  + G  P+L+LD++ A LD  +R  L  +V    SQ+ +T   
Sbjct: 296 SWSFALALRLAGYDLL-RSDGIEPVLVLDDVFAELDVGRRERLAGLVGGA-SQLLVTCAV 353

Query: 351 DKSVFDSLNE 360
           D  V  +L  
Sbjct: 354 DDDVPAALRG 363


>gi|296447171|ref|ZP_06889102.1| DNA replication and repair protein RecF [Methylosinus trichosporium
           OB3b]
 gi|296255336|gb|EFH02432.1| DNA replication and repair protein RecF [Methylosinus trichosporium
           OB3b]
          Length = 382

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 141/371 (38%), Positives = 207/371 (55%), Gaps = 4/371 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ L +++FR+YA+L +   +      G+NG GKTNILEA+S  SPGRG R A  A+  
Sbjct: 11  RVRRLRLADFRSYAALDIAILSPLVALTGENGAGKTNILEALSLFSPGRGLRGAEIAECA 70

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVIRVVDELNKHLRIS 123
           R      F+    ++  + L  +    E     +   R  +I+ V +        HLR  
Sbjct: 71  RRQGAGGFAVSIDLDSDDRLMQLGHGFEIGAPGETPARRFRIDRVPVSSARAFADHLRPL 130

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P+MD +F+G + +RRRFLDR+  ++D  H  R    ER +R RNRLL E   DS W 
Sbjct: 131 WLTPAMDGLFAGSAGDRRRFLDRLTMSVDAEHGARAARLERALRNRNRLLAEEQADSRWL 190

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
           ++ E ++A L V +  AR + +  L +LI  E      FP  +LS+ G L+    ++   
Sbjct: 191 TAAEREIAALAVAVAAARRDTVERLRALIAAERDDASPFPFAELSIDGELERLVGEEPAL 250

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +++ Y   L   R+ D+ + RTL GP  SDL+V +  K       STGEQK +L G+ L
Sbjct: 251 RVEDHYRSVLAAMRRRDAAAGRTLSGPQASDLLVRHGPKDEAARACSTGEQKALLTGLVL 310

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHARL++ TTG AP+LLLDEI+AH D  +R ALF  +  IG Q++MTG D  VFDSL   
Sbjct: 311 AHARLVAATTGTAPLLLLDEIAAHFDALRREALFEALARIGGQVWMTGADPRVFDSLTGR 370

Query: 362 AKFMRISNHQA 372
           A  +R++  + 
Sbjct: 371 ADLLRVTPGRV 381


>gi|254521265|ref|ZP_05133320.1| DNA replication, recombinaison and repair protein [Stenotrophomonas
           sp. SKA14]
 gi|219718856|gb|EED37381.1| DNA replication, recombinaison and repair protein [Stenotrophomonas
           sp. SKA14]
          Length = 364

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 154/372 (41%), Gaps = 10/372 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + + R +++  L+      +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MQIRRLALHQLRRFSAADLLPQPGLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  +        E          K   R        +++   +  +  L   L +  
Sbjct: 61  VRQGQEALEIFVEWDEQRANHPPHRRKAGLRHSGQDWKGRLDGEDVAQLGNLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 121 FEPGSHALVSGGGEPRRRFLDWGLFHVEPDFLSLWRRYSRALKQRNALLKQGGPSR-MLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R   +  L    +  +     P + +        +    +   +
Sbjct: 180 TWDHELAEAGEPLTSRRQHYLERLQQRTVS-LAATLAPQLGIQ-----GLELSPGWRRHE 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T +GPHR+D  VD+       A  S G+ K+  +   LA A
Sbjct: 234 LPLADALLLARERDRQAGYTSVGPHRADWSVDFHSIPGRDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
              +   G  P++ LD++++ LD   +  + + + D  +QIF+T T+  S    L +  +
Sbjct: 293 EDYAEQRGEWPVIALDDLASELDRTHQARVLQRLLDGPAQIFITATETPSALQDLADITR 352

Query: 364 FMRISNHQALCI 375
              + + Q + +
Sbjct: 353 -FHVEHAQIVAV 363


>gi|83588879|ref|YP_428888.1| DNA replication and repair protein RecF [Moorella thermoacetica
           ATCC 39073]
 gi|97180817|sp|Q2RMJ4|RECF_MOOTA RecName: Full=DNA replication and repair protein recF
 gi|83571793|gb|ABC18345.1| DNA replication and repair protein RecF [Moorella thermoacetica
           ATCC 39073]
          Length = 370

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/369 (25%), Positives = 159/369 (43%), Gaps = 20/369 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  FR+Y  L         I  G N  GKTN+LEAI +L+  R FR+     +  
Sbjct: 6   LQQLQLINFRSYKCLTWDCRPGLNIIFGPNAAGKTNLLEAIGYLALARSFRQQQDQQLLT 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+ SF     +V G+       I+L     +  + L IN    R++ EL     + +  
Sbjct: 66  WGASSF-----QVRGLCHSNGEKIELVINYQQHNKRLTINGNRNRLI-ELLGIFPVIYFG 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWC 183
           P    +  G    RR FLDR +   D  + R + D+ R++  RN LL     G       
Sbjct: 120 PDDLHLLKGGPAYRRHFLDREISMGDRLYCRNLQDYRRILFQRNLLLRAIKAGRGKEGEL 179

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+   G  I   R   + +L+  +    +       +L+L         +   A 
Sbjct: 180 EPWDIQLLATGKAICEKRSCFLQSLAPRVAATYRDMAGGE-ELALIY-------RPGVAS 231

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +EE+A++L  GR+ +  +  TL GPHR D      D        S G+Q+ +++ + LA 
Sbjct: 232 QEEWAERLKVGREREVQAGMTLWGPHRDDFTFTL-DGHEARYFASQGQQRAIVLALKLAE 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNETA 362
           AR         P+LLLD++ + LDE  + AL  ++     Q F+T T+  +  + L + +
Sbjct: 291 ARYYRELLHVMPVLLLDDVFSELDEAHQGALLELLAGAD-QAFLTTTEVGLLPARLIQRS 349

Query: 363 KFMRISNHQ 371
               ++  +
Sbjct: 350 HLWELARGR 358


>gi|255530448|ref|YP_003090820.1| DNA replication and repair protein RecF [Pedobacter heparinus DSM
           2366]
 gi|255343432|gb|ACU02758.1| DNA replication and repair protein RecF [Pedobacter heparinus DSM
           2366]
          Length = 367

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/377 (24%), Positives = 152/377 (40%), Gaps = 22/377 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  F+NY    + F      FVGDNG GKTN+L+AI +L   +G+        
Sbjct: 1   MWLKNITLLNFKNYTDANVSFSKTVNAFVGDNGAGKTNLLDAIHYLCLCKGYFNPIDTQQ 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G    F      +  E    I+  ++    +  +    N      +        +  
Sbjct: 61  IKAGQD-LFLIQGDFDRQEKNEKITCGVKRNQKKQFKR---NKKEYDKLANHIGLFPLVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
           + P    I    S ERRRF+D ++   D  +   +I + R +  RN LL +      +D 
Sbjct: 117 ISPYDTNIIMEGSEERRRFMDNVISQTDTNYLDELILYNRHLLNRNALLKQIAVTRSYDP 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +       Q+   G+KI   R + +     L  +Y Q       ++SL            
Sbjct: 177 TLLEIYNDQLVASGLKIYAKRQQFMIEFIPLFDKYYQFLTEDQERVSLQYQSQLND---- 232

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                 + + L    + D +  RT  G H+ +LI    D A+    GS G+QK  L+ + 
Sbjct: 233 ----AAFEQLLQQSVEKDKVLERTTTGIHKDELIFTISDMALK-KFGSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS----VF 355
           LA    +    GF P+LLLD+I   LD+ + + L  +V+     QIF+T T K     VF
Sbjct: 288 LAQYAYLQKYKGFKPLLLLDDIFDKLDDKRMHKLMEMVSHHDFGQIFITDTGKERVLAVF 347

Query: 356 DSLNETAKFMRISNHQA 372
           + +        ++N   
Sbjct: 348 NKIQVPVTLFEVNNGAI 364


>gi|315125114|ref|YP_004067117.1| gap repair protein [Pseudoalteromonas sp. SM9913]
 gi|315013627|gb|ADT66965.1| gap repair protein [Pseudoalteromonas sp. SM9913]
          Length = 364

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 160/375 (42%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRN  +L L       I  G+NG GKT++LEAI +LS G+ FR + +  +
Sbjct: 1   MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGCGKTSLLEAIYYLSHGKSFRTSKHKSI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123
                  F      + G + L D+SI +     ++    L+I     R V EL + + + 
Sbjct: 61  IAHQQDQFV-----IHGRKALYDLSIPIGISKTQAGETNLKIQGKASRKVSELAQLMPVQ 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-SW 182
            + P    +F G   ERR+FLD  +F ++         F ++++ RN LL     +    
Sbjct: 116 IITPESYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKSKPKNYFDQ 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + +   L  +IN  R+  I        + +  E      L+L   L+  F+  +  
Sbjct: 176 IKFWDKEFVRLAEQINKLRIAYITRFKQQFFDKMCAE------LTLIRDLEISFNAGWKE 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E     L    + DS    T  GPH++D        ++     S G+ K++L  + + 
Sbjct: 230 -SESLCDALEQSFERDSRQGFTSKGPHKADFSFSVAGSSVENVF-SRGQLKLLLYALKVT 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ----IFMTGTDKSVFDSL 358
              LI + T    ILL+D++ + L ED +  + +++T   SQ      ++ +  +V + +
Sbjct: 288 QNSLIESETDKQSILLIDDLPSELSEDTKEKVGQLLTHCSSQIFISSILSESISAVVEPM 347

Query: 359 NETAKFMRISNHQAL 373
               K   + +   +
Sbjct: 348 QRELKMFHVKHGNLI 362


>gi|21229481|ref|NP_635398.1| recombination protein F [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66766355|ref|YP_241117.1| recombination protein F [Xanthomonas campestris pv. campestris str.
           8004]
 gi|25453248|sp|Q8PEH3|RECF_XANCP RecName: Full=DNA replication and repair protein recF
 gi|81307651|sp|Q4V0S6|RECF_XANC8 RecName: Full=DNA replication and repair protein recF
 gi|21110941|gb|AAM39322.1| DNA replication and repair RecF protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571687|gb|AAY47097.1| DNA replication and repair RecF protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 368

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 147/370 (39%), Gaps = 9/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++     +   +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G           E      + + +   R        +++   +  +  L   L +  
Sbjct: 61  IRQGGQDLEIFVEWRERAGDSTERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPQMLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R++ +  L   ++        P + LS   F  G          
Sbjct: 180 AWDHELAESGETLTSRRLQYLERLQERLVPVATAI-APSLGLSALTFAPGWRRHEVS--- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T  GPHR+D    +       A  S G+ K+  +   LA A
Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWAPLFDALPGKDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
              ++  G  PI+ LD++ + LD   +  + + +    +Q+ +T T+         +T +
Sbjct: 293 EDFAHERGEWPIMALDDLGSELDRHHQARVIQRLASAPAQVLITATELPPGLADAGKTLR 352

Query: 364 FMRISNHQAL 373
              + + Q +
Sbjct: 353 RFHVEHGQLV 362


>gi|226942173|ref|YP_002797246.1| recombination protein F [Azotobacter vinelandii DJ]
 gi|259563355|sp|C1DFU4|RECF_AZOVD RecName: Full=DNA replication and repair protein recF
 gi|226717100|gb|ACO76271.1| DNA replication and repair protein ,RecF [Azotobacter vinelandii
           DJ]
          Length = 365

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 84/374 (22%), Positives = 152/374 (40%), Gaps = 18/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + ++  RN   + L    +  I  G NG GKT++LEAI  L   R FR    + V
Sbjct: 1   MSLGRVTVTAVRNLHPVTLNPSPRINILYGPNGSGKTSLLEAIHLLGLARSFRSQRLSPV 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +   P+  + F +V   +G   ++ +    R+      ++I+   +R   +L + L + 
Sbjct: 61  IQHEQPAC-TVFGQVLWNDGRVRNLGV---ARNRLGELQIRIDGQNVRSAAQLAESLPLQ 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++ R        +  +R RN  L  G  D    
Sbjct: 117 LINPDSFRLLEGAPKVRRQFLDWGVFHVEQRFLPAWHRLQTALRQRNSWLRHGRIDPVSQ 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I  L  +  E V  E      L+L+ +     ++S   +
Sbjct: 177 AAWDRELCLASEEIDSYRRSYIQVLKPVF-ESVLHELVELDGLTLSYYRGWDRERSLGEV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L      D     T  GP R+DL +            S G+QK+V+  + +A 
Sbjct: 236 -------LAASLPRDQQLGHTQAGPQRADLRLRLAAHN-AADLLSRGQQKLVVCALKIAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LNE 360
             L+        I L+D++ + LDE  R AL R++ ++  Q+F+T  D          + 
Sbjct: 288 GHLVDRAR-RECIYLVDDLPSELDEQHRRALCRLLEELHCQVFITCVDLEALREGWRTDT 346

Query: 361 TAKFMRISNHQALC 374
                 +   +   
Sbjct: 347 PVALFHVEQGRITQ 360


>gi|258542324|ref|YP_003187757.1| recombination protein F [Acetobacter pasteurianus IFO 3283-01]
 gi|256633402|dbj|BAH99377.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636461|dbj|BAI02430.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639514|dbj|BAI05476.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642570|dbj|BAI08525.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645625|dbj|BAI11573.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648678|dbj|BAI14619.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651731|dbj|BAI17665.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654722|dbj|BAI20649.1| DNA replication and repair protein RecF [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 382

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 133/366 (36%), Positives = 196/366 (53%), Gaps = 4/366 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L +S FRNY  L    DA   +  G+NG GKTN+LEA+S LSPGRG R A      
Sbjct: 13  RLLKLTLSNFRNYERLAWSPDASLLVLTGENGSGKTNLLEAVSLLSPGRGLRAAPLTQFG 72

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           R+G+ + +   AR+E  +   ++    +   +R  R   +N   IR  +     L   W+
Sbjct: 73  RMGATN-WGVSARIETEDEFLELGTGTQGGQERPRRVFLLNGRQIRGQEAWEDTLATVWI 131

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P MDR+FS  +  RRRFLDR+V A+ P H R +  ++R M  RNRLL   + + SW S 
Sbjct: 132 TPQMDRLFSEGASGRRRFLDRLVMAVTPHHARELAAYDRAMTQRNRLLQTRFSEHSWLSG 191

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-ALK 244
           +EA MA   V +  AR E +  +       +    FP    +L   +  K + S   A++
Sbjct: 192 LEASMARHAVAVAAARQETVRQICHYAQNGL--GAFPAAIATLECAVAQKLETSPALAVE 249

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +   +KL D R+ D+   R   G HRSD +++        A  STG+QK +L+G+ LAHA
Sbjct: 250 DWLREKLADLREDDAARGRATFGTHRSDFLLEDLTSRQPAALASTGQQKSLLIGVVLAHA 309

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           RL+++  G  PILLLDE   HLD  +R +L  IV D  + + +TGTD++ F  L +TA+F
Sbjct: 310 RLVTDYRGQPPILLLDEPLVHLDAARRASLLEIVQDFRTTVLLTGTDQAPFAPLKQTAQF 369

Query: 365 MRISNH 370
             + N 
Sbjct: 370 ETLKNG 375


>gi|21240777|ref|NP_640359.1| recombination protein F [Xanthomonas axonopodis pv. citri str. 306]
 gi|25453249|sp|Q8PRG0|RECF_XANAC RecName: Full=DNA replication and repair protein recF
 gi|21106041|gb|AAM34895.1| DNA replication and repair RecF protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 368

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 149/371 (40%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MHVVRLSIHRLRRFQTVELHPSSALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+          EG     + + +   R        +++   +  +  L   L +  
Sbjct: 61  IQQGANDLEVFVEWKEGGGAAVERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLTLWRRYARALKQRNALLKQG-AQPRMLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R+  +  L   ++        P + LS   F  G          
Sbjct: 180 AWDNELAESGETLTSRRMRYLERLQDRLVPVADAI-APALGLSALTFAPGWKRHEVS--- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T  GPHR+D +  +       A  S G+ K+  +   LA A
Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWMPSFHALPGKDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA-- 362
              +   G  P++ LD++ + LD   +  + + +    +Q+ +T T+      L + A  
Sbjct: 293 EDFAFERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATET--PPGLADAAAL 350

Query: 363 -KFMRISNHQA 372
            +   + + Q 
Sbjct: 351 LQQFHVEHGQI 361


>gi|312193900|ref|YP_004013961.1| DNA replication and repair protein RecF [Frankia sp. EuI1c]
 gi|311225236|gb|ADP78091.1| DNA replication and repair protein RecF [Frankia sp. EuI1c]
          Length = 374

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 88/379 (23%), Positives = 154/379 (40%), Gaps = 17/379 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FR+Y +L L   A    FVG NG GKTN+LEA+ +++     R +  A +
Sbjct: 1   MHVTHLQLVDFRSYPALELTLPAGVVTFVGANGQGKTNLLEAVGYVATLGSHRVSGDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+         V G         ++E    R+ + +++N   +    EL   L +  
Sbjct: 61  IREGAERAVIRSRIVNGDRAALA---EIEIVTGRANK-VRLNRRPLSRPRELLGLLSVVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G   ERRRFLD ++ A  PR    + D+ER++R R  LL   + D     
Sbjct: 117 FAPEDLAMVKGDPGERRRFLDELLVARTPRLAAVIADYERVLRQRTTLLR-AHGDLRTLE 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--------IKLSLTGFLDGKF 236
           S +  +A  G ++  AR+ +++ L   +                   + +     ++   
Sbjct: 176 SWDEALARHGAELLAARLALVDDLRPRVQAAYAAVAGTADEDATEKGVGVDYRCGVELPE 235

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                A+     ++L   R  +     TL+GPHR +L +    +     + S GE   + 
Sbjct: 236 GADRDAIAAALIEELARVRPREIERGVTLVGPHRDELALAVGGRP-ARGYASHGESWSLA 294

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA   L+      AP+LLLD++ A LD  +R  L  +V      +        V  
Sbjct: 295 LALRLASYELL-EADDRAPVLLLDDVFAELDAHRRRRLAELVAPAEQVLITAAVGADVPA 353

Query: 357 SLNETAKFMRISNHQALCI 375
            L        +   + L +
Sbjct: 354 ELGGP--RFTVQRGEVLDV 370


>gi|154243961|ref|YP_001414919.1| recombination protein F [Xanthobacter autotrophicus Py2]
 gi|154158046|gb|ABS65262.1| DNA replication and repair protein RecF [Xanthobacter autotrophicus
           Py2]
          Length = 378

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 210/379 (55%), Gaps = 11/379 (2%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +   I+ L ++ FR+Y S ++  +    +  G NG GKTNILEA+SFLSPGRG RRA 
Sbjct: 1   MPHA-AIRKLTLTAFRSYPSAQVSVEDGPVVLTGPNGAGKTNILEALSFLSPGRGLRRAQ 59

Query: 61  YADVTRI-----GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             ++        G P  ++  A VEG  G   +    +   +  VR  +I+       + 
Sbjct: 60  LGEIGHRAPGAAGEP-PWAVSALVEGALGEVRLGTGYDPVQEGGVRRCRIDGEPAPSANA 118

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
              HL++ WL P MD +F G   +RRR+LDR+V A+D  H  R+   ER +R RNRLL E
Sbjct: 119 FLDHLKVLWLTPEMDGLFLGPPGDRRRYLDRLVLAVDGAHGTRVNGLERALRSRNRLLEE 178

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDG 234
               + +  ++E ++AEL V +  AR+E +  L + I  +    + FP  +L+L G ++ 
Sbjct: 179 -NGSARFLDAVEHEVAELAVAVAAARLETVARLGAEIAAHRDDASLFPFAELALDGAVER 237

Query: 235 KFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                    +++ Y   L D R  D  + RTL GPH +DL V + +K +  A  STGEQK
Sbjct: 238 LIAVHPALEVEDRYRALLRDNRPRDRAAGRTLEGPHLTDLSVSHGEKQLPAARCSTGEQK 297

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            +L+G+ L+HARL+++  GF+PILLLD++ A+LD  +R  LF  +  +G+Q +MTG D +
Sbjct: 298 SLLIGLTLSHARLVASMQGFSPILLLDDVVAYLDAARRTGLFEALARLGAQAWMTGADPT 357

Query: 354 VFDSLNETAKFMRISNHQA 372
            F +L+  A+   ++    
Sbjct: 358 AFSALDG-AERFEVAPGTI 375


>gi|120401032|ref|YP_950861.1| recombination protein F [Mycobacterium vanbaalenii PYR-1]
 gi|166220720|sp|A1T105|RECF_MYCVP RecName: Full=DNA replication and repair protein recF
 gi|119953850|gb|ABM10855.1| DNA replication and repair protein RecF [Mycobacterium vanbaalenii
           PYR-1]
          Length = 386

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 87/374 (23%), Positives = 159/374 (42%), Gaps = 24/374 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR++A + L  +   T+FVG NG GKTN++EA+ + +     R AS A +
Sbjct: 1   MYVRHLALTDFRSWARVELELEPGRTVFVGSNGFGKTNLIEALWYSATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       ++++ L+    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGAERAVVSTIVVNDG---RELAVDLDITSGRANKA-RLNRSPVRSAREILGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G   ERRR+LD +     PR      D+++++R R  LL           
Sbjct: 117 FAPEDLALVRGDPGERRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASGARYRGD 176

Query: 181 ----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234
                        +A  G ++  ARV+++N L+  + +  Q          +     +D 
Sbjct: 177 RGALETLDVWNGHLASHGAQLISARVQLVNELAPEVEKAYQLLAPGSRPAAIRYRSGVDV 236

Query: 235 KFDQSFCALKEE------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
              ++     +E          L   R  +      L+GPHR DL +   D+ +     S
Sbjct: 237 VEAEAAAGNSDEEMFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQ-VAKGFAS 295

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE   + + + LA   L+    G  P+LLLD++ A LD  +R AL + V     Q+ +T
Sbjct: 296 HGESWSMALALRLAAYELL-RVEGSDPVLLLDDVFAELDSARRQALAQ-VAATAEQVLVT 353

Query: 349 -GTDKSVFDSLNET 361
              ++ +    +  
Sbjct: 354 AAVEEDIPAEWDAR 367


>gi|284052471|ref|ZP_06382681.1| recombination protein F [Arthrospira platensis str. Paraca]
          Length = 379

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 90/381 (23%), Positives = 177/381 (46%), Gaps = 19/381 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++ +FRNY +  + FDA  TI VG+N  GK+N+LEA+  LS  +  R     D+
Sbjct: 1   MYLKTLHLRQFRNYEAQDVAFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRVNRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             + + +     A +E      D+++ L ++     R + IN   ++   +    L +  
Sbjct: 61  V-LDNHAIAQITATLERDSSTLDLALTLRSQGR---RTVAINGQSVKRHLDFLSILNVVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---DSS 181
                  +  G   ERR +LDR++  ++P +   +  + +++R RN LL  G        
Sbjct: 117 FSSLDLDLVRGSPAERRHWLDRLLIQLEPVYAYMLDQYNQVLRQRNALLKRGPMGGTTPE 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238
             +  +AQ+A  G ++   R  +I  L  L   + Q  +     L++T   + +      
Sbjct: 177 ELAVWDAQLAVTGARVLRRRDRVIERLEPLARMWHQSISGSSETLNITYQPNIEPPCKPQ 236

Query: 239 ------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                     +++ +  K+      +     TL+GPHR D+I    ++     +GS+G+Q
Sbjct: 237 QRWSRWPPEQVQQAFLTKISTRAIAERSQGLTLVGPHRDDVIFTI-NQTPARQYGSSGQQ 295

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + +++ + LA  +LI +  G  P+LLLD++ A LD  ++N L + +++   Q  +T T  
Sbjct: 296 RTLVLALKLAELQLIESVIGEPPLLLLDDVLAELDPHRQNQLLQAISE-RFQTLITTTHL 354

Query: 353 SVFDS-LNETAKFMRISNHQA 372
             FD    + ++ + +   + 
Sbjct: 355 GAFDHQWLQQSQILMVQQGKI 375


>gi|78484349|ref|YP_390274.1| DNA replication and repair protein RecF [Thiomicrospira crunogena
           XCL-2]
 gi|123556168|sp|Q31JS3|RECF_THICR RecName: Full=DNA replication and repair protein recF
 gi|78362635|gb|ABB40600.1| DNA replication and repair protein RecF [Thiomicrospira crunogena
           XCL-2]
          Length = 362

 Score =  279 bits (714), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 158/369 (42%), Gaps = 13/369 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI    +  FRN     L F     + VGDN  GKT ++EAI  L+ GR FR A    + 
Sbjct: 3   KILQFQLQHFRNIEQASLTFGEGLNLIVGDNAAGKTALIEAIWTLASGRSFRTAKPHQLI 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +            + G    AD   K+          L+I+  + +   +++  L +  L
Sbjct: 63  QQNQSELV-----LFGTLTEADRIHKIGLARTSDKVTLKIDGELAKTQADMSAKLPVQLL 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P   R+       RR+F+D   F  +         ++R ++ RN  L +    +S    
Sbjct: 118 TPESHRLLEEGPKARRQFMDWGCFHHNADFIHLWRHYQRALKQRNHALKK-RLPASQIQL 176

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            +AQ+ +   KI++ R + I  L+  ++E+ Q    P I +S     +  +   +    E
Sbjct: 177 WDAQLVDAAEKIDVIRADYITRLTPYLVEFCQAL-MPEITVS----PECHYRPGWPKTAE 231

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            Y + L D    D++   T  G HR+D+   +  +   +   S G+QK+ +  + LA A 
Sbjct: 232 SYRQLLADNFAKDTLQGHTQYGSHRADIKFRFNGQE-ALMILSRGQQKLFVCALLLAQAT 290

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAKF 364
           L    +    I+L+D++ A LD   R  L +++  +  Q  +T T + +   L  E AK 
Sbjct: 291 LYQQHSQNPVIMLIDDLPAELDAKHRETLLKLLNLLDIQHILTSTAQDLIPVLEPEKAKI 350

Query: 365 MRISNHQAL 373
            RI + + +
Sbjct: 351 WRIQHGELI 359


>gi|153002882|ref|YP_001377207.1| DNA replication and repair protein RecF [Anaeromyxobacter sp.
           Fw109-5]
 gi|166220696|sp|A7H677|RECF_ANADF RecName: Full=DNA replication and repair protein recF
 gi|152026455|gb|ABS24223.1| DNA replication and repair protein RecF [Anaeromyxobacter sp.
           Fw109-5]
          Length = 369

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 159/370 (42%), Gaps = 12/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L + +FRN A + L+   + T+ +G+NG GKTN+LEAI FL+  +  R A  A++
Sbjct: 1   MKLLSLAVQDFRNLAQVELLPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRTARLAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ +        +G  G   +++++        R   ++      +D     L    
Sbjct: 61  VRHGAQTGL-VAGDFDGPGGTRRVAVQV----APGGRVALLDGKPQERLDAYFDGLAAVC 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RRRFLDR  F   P       ++ R +R RN  L  G  +    +
Sbjct: 116 FAPDDLLLVKGGPEGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRGGSPEVE--A 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSFC 241
           S    +   G +I   R +++  L+  +    ++ +    P  + +       + +    
Sbjct: 174 SFRGPLVRAGARIVRRRRDLVEELAPRVSTAFREISGPAAPEARFAYRPAAGVQAEVGEA 233

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            L E     L    + D     T +GPH  +L++    +     + S G+Q+ +++ + +
Sbjct: 234 ELAERLEHALAQRLERDRDRGFTSVGPHMDELVLALDGRGARA-YASQGQQRALVLALKI 292

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNE 360
           A    +    G  P+LLLD++S+ LD  K   L   +  + +Q F+T TD+ + + +   
Sbjct: 293 AEIENLRAALGRPPLLLLDDVSSELDPTKNRYLLAYLAALPAQAFLTTTDRRLIEPAAGP 352

Query: 361 TAKFMRISNH 370
              F ++   
Sbjct: 353 DTAFYKVEGG 362


>gi|110640083|ref|YP_680293.1| DNA replication and repair protein [Cytophaga hutchinsonii ATCC
           33406]
 gi|123354188|sp|Q11NR3|RECF_CYTH3 RecName: Full=DNA replication and repair protein recF
 gi|110282764|gb|ABG60950.1| DNA replication and repair protein [Cytophaga hutchinsonii ATCC
           33406]
          Length = 377

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 84/377 (22%), Positives = 145/377 (38%), Gaps = 23/377 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ +++  F+NY  L L F A   +F G NG GKTN+L++I  L   + F   +    
Sbjct: 1   MYIEKISLLNFKNYPELELSFSAGINLFAGLNGSGKTNLLDSIYCLCLTKSFLSTTDQQT 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G   F +      G         K++   D   +   ++      + E         
Sbjct: 61  ITTGQGYFSAL-----GWFQENAKEFKIQYDFDGKKKSFTVDKKPYAKISEHIGRFPAIV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180
           L P    +    S +RRRF D +    D  +   +I +   ++ RN LL +       D 
Sbjct: 116 LTPHDTDLIRNSSEDRRRFFDTLFSQADHVYLDALIRYNHFIKQRNALLKQAADGMLVDR 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               + +  + + G  I   R E +  L  +  EY    +  H    +            
Sbjct: 176 ILMDAYDHNLLQSGKIIAQKRDEYLKRLLPIFQEYYSLLSPDHEATDIEY--------ET 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L  ++ +   D    D + +RT  G H+ D      ++ I   +GS G+QK  ++ + 
Sbjct: 228 NVLSADFEQVFKDSYSKDLILQRTNKGVHKDDFKFLINNEPIK-HYGSQGQQKTFVIALK 286

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKS----VF 355
           LA   L+   TG  PILL+D+I   LD+ +   L  +V   I  Q+F++          F
Sbjct: 287 LAQYELLKACTGHNPILLMDDIFDKLDDLRIEKLIHLVQKYITGQLFISDARPDRSSIFF 346

Query: 356 DSLNETAKFMRISNHQA 372
            S  +  +   I   + 
Sbjct: 347 QSNTKDFRMFIIDRGKV 363


>gi|77358985|ref|YP_338560.1| gap repair protein [Pseudoalteromonas haloplanktis TAC125]
 gi|97180877|sp|Q3IDE8|RECF_PSEHT RecName: Full=DNA replication and repair protein recF
 gi|76873896|emb|CAI85117.1| gap repair protein with nucleoside triP hydrolase domain, part of
           RecFOR complex that targets RecA to ssDNA-dsDNA junction
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 364

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 161/375 (42%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRN  +L L       I  G+NG GKT++LEAI +LS G+ FR + +  +
Sbjct: 1   MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTSKHKSI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRIS 123
                  F      + G + + D+SI +     ++    L+I     R + EL + + + 
Sbjct: 61  IAHQQEQFV-----IHGRKAIHDLSIPIGISKTQAGETNLKIQGKASRKISELAQLMPVQ 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-SW 182
            + P    +F G   ERR+FLD  +F ++         F ++++ RN LL     +    
Sbjct: 116 IITPESYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKSKPKNYFDQ 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + +   L  +IN  R+  I+       + +  E      L+L   L+  F+  +  
Sbjct: 176 IKFWDKEFVRLAEQINKLRMAYISRFKQQFFDKMCAE------LTLIRDLEISFNAGWKE 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E  +  L    + D+    T  GPH++D        ++     S G+ K++L  + + 
Sbjct: 230 -SESLSDALELNFERDARQGFTSKGPHKADFSFSVAGSSVENIF-SRGQLKLLLYALKVT 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ----IFMTGTDKSVFDSL 358
              LI + T    ILL+D++ + L ED +  + +++    SQ      ++ +  +V + +
Sbjct: 288 QNSLIESETDKQSILLIDDLPSELSEDTKEKVGQLLAHCSSQIFISSILSESISAVVEPM 347

Query: 359 NETAKFMRISNHQAL 373
               +   + +   +
Sbjct: 348 QRELQMFHVKHGNLI 362


>gi|126663370|ref|ZP_01734368.1| putative DNA replication and repair protein [Flavobacteria
           bacterium BAL38]
 gi|126625028|gb|EAZ95718.1| putative DNA replication and repair protein [Flavobacteria
           bacterium BAL38]
          Length = 359

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 164/372 (44%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N A +   FDA+   FVG NGVGKTNIL+AI  L+ G+ +        
Sbjct: 1   MFLKQLSLLNYKNLAQIEFEFDAKINCFVGKNGVGKTNILDAIYHLAYGKSYFNPLAIQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G   FF   A +E       I   L+    ++++    N  +   + E    + +  
Sbjct: 61  IRHGEE-FFVIDALLEKNNKEEKIVCSLKKGQKKTIKR---NGKIYDKLSEHLGLIPLVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + PS   +    S  RR+F+D ++  +D  + + +I +++++  RN LL        FD+
Sbjct: 117 ISPSDSDLIVEGSETRRKFIDSVIATLDNSYLQLLIQYQKIVAQRNALLKYFALNQTFDA 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              S    Q++  G  I   R + ++    +  ++    +  + K++L            
Sbjct: 177 DNLSIYNEQLSHSGQLIFEKRKQFLSDFIPIFEKHHTNISGGNEKVALKY--------ES 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              K+     L +  + D + + T  G H+ DLI +     I    GS G+QK  L+ + 
Sbjct: 229 QLFKKNLLLLLEESLQKDRIIQYTSAGIHKDDLIFEIEGYPIK-KFGSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKS----VF 355
           LA    +   +G  PILL D+I   LDE +   +  +V D +  QIF++ T       + 
Sbjct: 288 LAQFEFMKKQSGELPILLFDDIFDKLDETRVQKIVTMVNDAVFGQIFISDTHAKRTELII 347

Query: 356 DSLNETAKFMRI 367
              +++ K   I
Sbjct: 348 KETHQSYKIFSI 359


>gi|238765486|ref|ZP_04626405.1| DNA replication and repair protein recF [Yersinia kristensenii ATCC
           33638]
 gi|238696310|gb|EEP89108.1| DNA replication and repair protein recF [Yersinia kristensenii ATCC
           33638]
          Length = 323

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 138/337 (40%), Gaps = 14/337 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   +     VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLALASGFNFLVGPNGSGKTSVLEAIYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  + + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHECAGFI-LHGRVDANERESSVGLSKSRQGDTKVR---IDGTDGHKVAELAQLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFMAWSNLKRLLKQRNAALRQ-VSRYAQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  L  +I+  R    +A+++ I         P   LS +       +       
Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFSFQRGWDKES------ 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T +GPH++D  +   D        S G+ K+++  + LA  
Sbjct: 229 -DYGELLERQFERDRALTYTAVGPHKADFRIR-ADGTPVEDLLSRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
             ++  +G   + LLD+ ++ LD  +R  L   +   
Sbjct: 287 EFLTRQSGRRCLYLLDDFASELDTGRRRLLAERLKAT 323


>gi|91214642|ref|ZP_01251615.1| DNA replication and repair protein RecF [Psychroflexus torquis ATCC
           700755]
 gi|91187069|gb|EAS73439.1| DNA replication and repair protein RecF [Psychroflexus torquis ATCC
           700755]
          Length = 364

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 86/373 (23%), Positives = 163/373 (43%), Gaps = 21/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L++  ++N+  L L FD++   FVG NG+GKTN+L+AI  L+ G+ +     +  
Sbjct: 1   MIIKKLSLINYKNFEQLTLEFDSKINCFVGKNGIGKTNVLDAIYHLAFGKSYFNPVTSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     FF         E    I   + +      + ++ N      + +    + +  
Sbjct: 61  IKH-EEEFFMLEGEFLNGEKEERI---ITSFKRGQGKLIKRNGKEYEKISDHIGTIPLVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   +    S  RR+F+D ++   D  +   ++ + +++  RN LL        FD 
Sbjct: 117 ISPTDRDLILEGSETRRKFMDGVIAQGDKLYLNTLLKYNKIVSQRNALLKYFAVNRTFDE 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +     + Q+ E G  I   R + I     ++ +  Q+ +     +SLT        +S 
Sbjct: 177 TSLEVYDDQIIEFGEIIFEKRQQFIKEFKPILKKRYQEISNSREDISLTY-------KSQ 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E + + L  G K D   + +  G H+ DLI      ++    GS G+QK  L+ + 
Sbjct: 230 FNNGESFKEVLKFGLKTDLQRQFSNFGTHKDDLIFKIKSHSVK-KFGSQGQQKSYLIALK 288

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL- 358
            A    + +  G  PILLLD+I   LDED+ + + ++VTD    Q+ ++ T     +++ 
Sbjct: 289 FAQYDFLKSHYGVKPILLLDDIFDKLDEDRVSKIVKMVTDTELGQMCISDTHPERTENVV 348

Query: 359 ---NETAKFMRIS 368
               +  K + + 
Sbjct: 349 KKNTDHYKMINLE 361


>gi|15834965|ref|NP_296724.1| recombination protein F [Chlamydia muridarum Nigg]
 gi|270285139|ref|ZP_06194533.1| recombination protein F [Chlamydia muridarum Nigg]
 gi|270289161|ref|ZP_06195463.1| recombination protein F [Chlamydia muridarum Weiss]
 gi|301336534|ref|ZP_07224736.1| recombination protein F [Chlamydia muridarum MopnTet14]
 gi|13959495|sp|Q9PKW5|RECF_CHLMU RecName: Full=DNA replication and repair protein recF
 gi|7190387|gb|AAF39207.1| recF protein, putative [Chlamydia muridarum Nigg]
          Length = 365

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 150/371 (40%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRNY+ LRL    +     G N  GKTNILEA+  LS GR FR +   + 
Sbjct: 1   MRVHSLFLKDFRNYSELRLELGPEMNSIFGLNAQGKTNILEALYILSLGRSFRTSRLTEA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS  FF     +E +     +   L  + D+  + +  +   I  +  L     +  
Sbjct: 61  IRFGSSHFF-----IEAVFSQNQVFHTLSIQVDKRGKKILFDGAPITKLSALVGLFPVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  I  G   ERRRFLD ++     ++  ++  + + +  RN  +     D    +
Sbjct: 116 FSVKDTTIIEGSPAERRRFLDLLLAQASEKYTGQIALYHKALDQRNAAIK--TQDYKTIA 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +  + +   G  + + R E    L  +            + L     L      +   + 
Sbjct: 174 AWNSPLIAYGSLVALLRYECAKKLHKIFQNLWDNTLKETLSLRYESSLITTESPTLNDIA 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y ++L      D     T +GPHR +LI+   D  ++    S G++  +L  +  A  
Sbjct: 234 SNYYEQLRLANTKDFELGYTTVGPHRDELIITLNDLPVS-KFSSEGQKHSLLAVLRFAEC 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             +       P+L +D+I A LD+++ + LF++ T +G  +  +    +  DS    +  
Sbjct: 293 VYLQEEFLIHPLLCMDDIHACLDQNRLDQLFQLSTSLGQTVTTSTICPNHLDS---NSSI 349

Query: 365 MRISNHQALCI 375
             ++  Q   +
Sbjct: 350 FHVTQAQVSLV 360


>gi|332304389|ref|YP_004432240.1| DNA replication and repair protein RecF [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171718|gb|AEE20972.1| DNA replication and repair protein RecF [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 363

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 150/373 (40%), Gaps = 19/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + I   RN   + L         +G NG GK++ILEAI +L  GR FR   +  V
Sbjct: 1   MKLDSVQIRNLRNLQQVSLNPSHGVNFILGINGSGKSSILEAIHYLGFGRSFRTTKHKHV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    SF + F +    E +  + I     D   V  + IN V    + EL   L +  
Sbjct: 61  IQSDQESF-TVFCQCTDQESVKRLGISRNIND---VVSVSINGVRGNKISELVSQLPVQI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    I  G    RR+++D  +F ++         + +L++  N L  +   GY D  
Sbjct: 117 FTPQSSDILLGSPKLRRKYIDWCLFHVEHPFLICSNSYTKLLKHNNALCRKHQVGYADPQ 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                   +A+ G  +   R  M+  L  LI   ++    P   + ++ +   +      
Sbjct: 177 RI-YWTEHLAKYGETLTQFRNTMMERLIPLITSNLEH-FLPEFCVEISYYRGWEKGL--- 231

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
               +  + L      D  +    +GPH++D+      K       S G+ ++++  + L
Sbjct: 232 ----DLIEALAKASDRDYRNGYISVGPHKADVRFKIDGKPAHEVL-SRGQLRMLVAALQL 286

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-- 359
           A  + + + T    I LLD++ A LD  KR      + +  +Q+F+T  +    + ++  
Sbjct: 287 ATTQCLMSYTQKTCIFLLDDVGAELDAAKREVFIDKLLESNTQLFVTAIEAHQLEFIDKY 346

Query: 360 ETAKFMRISNHQA 372
           +  K   + + Q 
Sbjct: 347 QNKKMFHVEHGQV 359


>gi|111020658|ref|YP_703630.1| recombination protein F [Rhodococcus jostii RHA1]
 gi|123340329|sp|Q0SAG4|RECF_RHOSR RecName: Full=DNA replication and repair protein recF
 gi|110820188|gb|ABG95472.1| DNA replication and repair protein [Rhodococcus jostii RHA1]
          Length = 410

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 93/392 (23%), Positives = 165/392 (42%), Gaps = 39/392 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++ +FR++ +L L      T+FVG NG GKTN+LEA+ +LS     R +S A +
Sbjct: 1   MFVRALSLRDFRSWDALGLTLRPGCTVFVGPNGHGKTNVLEALGYLSTLSSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+   F+    V       ++++ LE  + +S R  +IN    R   E+   L+   
Sbjct: 61  IRTGTGQAFAGATVVNAG---RELTVDLELNEGKSNRA-RINQSPTRRPREILGILQTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174
             P    +  G   +RRR+LD ++ +  PR      D++R++R R+ LL           
Sbjct: 117 FAPEDLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYDRVLRQRSALLKTAGGALRRVS 176

Query: 175 --------EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--I 224
                   +G    +     +  +A  G ++   R+ +++ L+  + E  Q         
Sbjct: 177 RGSGRPSEDGASALATLEVWDGHLAAHGAQLLAGRLHLVHDLAPHLAESYQSLAPESRPA 236

Query: 225 KLSLTGFLDGKFDQSFCA------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
            +     L       F              L+E + ++L   R  +      L+GPHR D
Sbjct: 237 SIRYRSSLGSSLPPEFTEPARVPEAGDIAFLEERFLQELSVMRSKEIERGVCLVGPHRDD 296

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           L +   D        S GE     + + LA   L+  + G  P+L+LD++ A LD  +R 
Sbjct: 297 LELHLGDTPAK-GFASHGESWSFALSLRLAGFALL-RSDGSDPVLMLDDVFAELDRRRRR 354

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           AL ++  D   Q+ +T           +  +F
Sbjct: 355 ALAKVALDAE-QVLITAAVPEDVPEELDAVRF 385


>gi|326335178|ref|ZP_08201375.1| recombination protein F [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692708|gb|EGD34650.1| recombination protein F [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 378

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 91/360 (25%), Positives = 153/360 (42%), Gaps = 18/360 (5%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++ +K L I  F+N  +    F  +    VG+NGVGKTN L+AI  LS  + +   +   
Sbjct: 19  QMFLKQLYILNFKNIENKEFSFSPKLNCLVGNNGVGKTNSLDAIYHLSMTKSYFNTTTLY 78

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             R+G   F+      +  +    I   ++       + L+ N  V   + E      I 
Sbjct: 79  NIRLGED-FYLIEGNFQKEDRQEHIVCSVKRG---QKKILKRNGKVYEKLSEHIGAFPIV 134

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179
            + PS   +    S  RRRFLD M+  I P +   ++ + +++  RN LL     + YFD
Sbjct: 135 IVSPSDRDLIHEGSETRRRFLDSMLSQIQPHYLEDLLHYNKILSQRNSLLKIMAEKQYFD 194

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                  + Q++  G KI   R   + +      E  ++ +     + +           
Sbjct: 195 DITLDIYDEQLSLYGEKIFQERSAFLTSFLPYFQEQYKRLSQGRETVDIHY--------E 246

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               KE+    L    + D + + T +G H+ DLI    ++ +    GS G+QK  L+ +
Sbjct: 247 SSLKKEKLKTLLKRSIEQDRIVQYTTVGIHKDDLIFSINNQPVK-KFGSQGQQKSFLIAL 305

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358
            LA    I   T   PILLLD+I   LD  +   L  +VT+    Q+F++ TDK   + +
Sbjct: 306 KLAQFHSIYKQTSVTPILLLDDIFDKLDAQRVTQLIHLVTEAPFGQVFISDTDKDRTERI 365


>gi|237806779|ref|YP_002891219.1| DNA replication and repair protein RecF [Tolumonas auensis DSM
           9187]
 gi|237499040|gb|ACQ91633.1| DNA replication and repair protein RecF [Tolumonas auensis DSM
           9187]
          Length = 357

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 158/368 (42%), Gaps = 16/368 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  FRN     +       + +G NG GK+++LEAI +LS GR FR      V  
Sbjct: 2   LHKLQIQHFRNLGQTEIYPSGGMNLLLGLNGSGKSSVLEAIHYLSLGRSFRTHLTNRVIM 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  +F + FA++E  E    I ++ + + D     L+I       + +L   L +  + 
Sbjct: 62  QGEKAF-TLFAQLELDEQSISIGLQKDRQGDTQ---LKIGGKSADKLAQLASLLPLQLIH 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    + +G   +RR F+D  VF ++           RL++ RN LL +    +   +  
Sbjct: 118 PEGYNLLTGGPQQRRAFIDWGVFHVEQAFFPLWGKVRRLLKQRNALLRQSSHYAP-LAYW 176

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           + Q+AE    +++ R +   AL  L+ +  Q E  P      T +   + +Q    L   
Sbjct: 177 DQQLAEFSEALSVFRQQYCQALLPLVQQICQ-ELLPEYTFQATFYAGWQQEQGLHLL--- 232

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
               L +G + D     T IGPHR+DL +   +        S G+ K+++  + LA    
Sbjct: 233 ----LQEGFERDRQLGHTAIGPHRADLRLR-AEGVPVQDLLSRGQLKLLVCALRLAQGLY 287

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--TAKF 364
           +   +    + L+D+ ++ LD +KR  L + +    SQ+F+T  D+     + +    + 
Sbjct: 288 LRQNSEKTCLFLIDDFASELDAEKRYVLAKRLQQCESQVFITAIDQQPLQEMMQEFDCRL 347

Query: 365 MRISNHQA 372
             +     
Sbjct: 348 FHVKQGNI 355


>gi|300814773|ref|ZP_07095021.1| putative DNA replication and repair protein RecF [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300511160|gb|EFK38412.1| putative DNA replication and repair protein RecF [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 358

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 93/356 (26%), Positives = 155/356 (43%), Gaps = 11/356 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + + F+ +  FRNY SL+L    +  I  G N  GKTN+LEAI        F+     D+
Sbjct: 1   MNLSFIGLYNFRNYKSLKLNTGPKINIIYGKNASGKTNLLEAIYMTCKAYSFKNPRDNDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                          E      +  I++   +   V+   IN+      D   +   I  
Sbjct: 61  INFSKNEAC-ILGTYENNCYKDNYRIEITRNN---VKKYFINEQKTNSKD-FRQARHIIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    I      +RRRF+D  +  ID  +   +  + +++  RN+LL     + S   
Sbjct: 116 FSPVDLNIIKNSPSDRRRFIDESLSNIDLSYDYYLSQYRKILMERNKLLK-ISKNMSLLE 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +++++G KI I R+  I  L+    ++ Q  +  + +L  T         +   ++
Sbjct: 175 IYDRELSKIGSKIIIMRLIAIKELNKYANKHYQNLSK-NDRLKTTYLSTIPLSSNEEEIR 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +   L   +  D   + T IGPHR D+     DK+ T A GS GEQ+ V++ + L+  
Sbjct: 234 ENFYNFLKLNQYKDFQRKNTSIGPHRDDIDFKINDKS-TKAFGSQGEQRSVVLSLKLSEF 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359
            LI        ILLLD++ + LDE +   L   + D  +Q F+T T+ K  F +LN
Sbjct: 293 DLIYKKFNDKSILLLDDVFSELDEKRTMYLLDSIKD--TQTFITTTEFKDYFKNLN 346


>gi|325922761|ref|ZP_08184495.1| DNA replication and repair protein RecF [Xanthomonas gardneri ATCC
           19865]
 gi|325546757|gb|EGD17877.1| DNA replication and repair protein RecF [Xanthomonas gardneri ATCC
           19865]
          Length = 368

 Score =  278 bits (712), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 79/369 (21%), Positives = 147/369 (39%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MHVVRLSIHRLRRFQTVELYPASSLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+          E     ++ S +   R        +++   +  +  L   L +  
Sbjct: 61  IQQGADDLEVFVEWRERSGETSERSRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPRMLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R+  ++ L   ++        P + LS   F  G          
Sbjct: 180 AWDHELAESGESLTSRRLRYLDRLQERLIPVATAI-APSLGLSALTFAPGWKRHEVS--- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T  GPHR+D    + D        S G+ K+  +   LA A
Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWTPAF-DALPGKDTLSRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
              ++  G  P++ LD++ + LD   +  + + +    +Q+ +T T+         E   
Sbjct: 293 EDFAHERGEWPVIALDDLGSELDRHHQARVLQRLASAPAQVLITATEIPPGLADAGELLH 352

Query: 364 FMRISNHQA 372
              + + Q 
Sbjct: 353 LFHVEHGQI 361


>gi|291571835|dbj|BAI94107.1| DNA replication and repair protein RecF [Arthrospira platensis
           NIES-39]
          Length = 379

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 90/381 (23%), Positives = 177/381 (46%), Gaps = 19/381 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++ +FRNY +  + FDA  TI VG+N  GK+N+LEA+  LS  +  R     D+
Sbjct: 1   MYLKTLHLRQFRNYEAQDVAFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRVNRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             + + +     A +E      D+++ L ++     R + IN   ++   +    L +  
Sbjct: 61  V-LDNHAIAQITATLERDSSTLDLALTLRSQGR---RTVAINGQSVKRHLDFLSILNVVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---DSS 181
                  +  G   ERR +LDR++  ++P +   +  + +++R RN LL  G        
Sbjct: 117 FSSLDLELVRGGPAERRHWLDRLLIQLEPVYAYMLDQYNQVLRQRNALLRRGPMGGTTPE 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238
             +  +AQ+A  G ++   R  +I  L  L   + Q  +     L++T   + +      
Sbjct: 177 ELAVWDAQLAVTGARVLRRRDRVIERLEPLARMWHQSISGSRETLNITYQPNIEPPCKPQ 236

Query: 239 ------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                     +++ +  K+      +     TL+GPHR D+I    ++     +GS+G+Q
Sbjct: 237 QRWSRWPPEQVQQAFLTKISTRAIAERSQGLTLVGPHRDDVIFTI-NQTPARQYGSSGQQ 295

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + +++ + LA  +LI +  G  P+LLLD++ A LD  ++N L + +++   Q  +T T  
Sbjct: 296 RTLVLALKLAELQLIESVIGEPPLLLLDDVLAELDPHRQNQLLQAISE-RFQTLITTTHL 354

Query: 353 SVFDS-LNETAKFMRISNHQA 372
             FD    + ++ + +   + 
Sbjct: 355 GAFDHQWLQQSQILMVQQGKI 375


>gi|218442160|ref|YP_002380489.1| recombination protein F [Cyanothece sp. PCC 7424]
 gi|226737786|sp|B7KID4|RECF_CYAP7 RecName: Full=DNA replication and repair protein recF
 gi|218174888|gb|ACK73621.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7424]
          Length = 384

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 176/387 (45%), Gaps = 25/387 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  FRNY   ++ F++Q TI VG+N  GK+N+LEA+  L+  +  R +   D+
Sbjct: 1   MYLKTVQLRSFRNYREQQVNFESQKTIIVGNNAQGKSNLLEAVELLATLKSHRVSRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+ +     A +E   GLA++ + L        R + +N   +R   +    L    
Sbjct: 61  VLEGATTG-QILATLERAYGLAELGLILRVSGR---RTVILNQEPLRRQLDFLGVLNAVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
                  +  G    RR ++D ++  ++P +   +  + ++++ RN LL +         
Sbjct: 117 FSSLDLDLVRGSPESRRSWIDTLLVQLEPIYAHILSQYYQVLKQRNALLKKIRQQEEDSQ 176

Query: 179 -----------DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                      D S     ++Q+AE G ++   R  ++  L+ L  ++    +    +L 
Sbjct: 177 NPSLSSEQLSNDISQLKLWDSQLAETGSRVTRRRARVLERLTPLAQKWHANISGKTEQLE 236

Query: 228 LTGFLDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           +    +  + +     +++ + +K+   R  +     T++GPHR ++     ++     +
Sbjct: 237 IQYMPNVNWTEDEPMQVQQAFLEKIEKRRIAEQQLGTTVVGPHRDEIEF-IINQTPAKYY 295

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           GS G+Q+ +++ + LA   LI    G  P+LLLD++ A LD  ++N L   + D   Q  
Sbjct: 296 GSQGQQRTLVLALKLAELHLIEEVVGEPPLLLLDDVLAELDPHRQNQLLDAIED-RFQTL 354

Query: 347 MTGTDKSVFDS-LNETAKFMRISNHQA 372
           +T T  + F++   ++++ + I   Q 
Sbjct: 355 ITTTHLNSFETKWLKSSQILSIDGGQI 381


>gi|315441700|ref|YP_004074579.1| DNA replication and repair protein RecF [Mycobacterium sp. Spyr1]
 gi|315260003|gb|ADT96744.1| DNA replication and repair protein RecF [Mycobacterium sp. Spyr1]
          Length = 389

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 84/363 (23%), Positives = 154/363 (42%), Gaps = 25/363 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR+++ + L      T+FVG NG GKTN++EA+ + +     R AS A +
Sbjct: 1   MYVRHLALTDFRSWSRVELELSPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       ++++ L+    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGAERAVVSTIIVNEG---RELAVDLDITSGRANKA-RLNRSPVRSAREILGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G   +RRR+LD +     PR      D+++++R R  LL           
Sbjct: 117 FAPEDLALVRGDPGDRRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASSARFRGD 176

Query: 181 ----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                     +  +A  G ++  ARV++++ L+  + +  Q    P  + +   +  G  
Sbjct: 177 RGALETLDVWDGHLAAHGAQLIAARVDLVHELAPEVEKAYQ-LLAPASRPATVRYRSGVE 235

Query: 237 ---------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
                    +      +      L   R  +      L+GPHR DL +   D+       
Sbjct: 236 VVEAEAAAGNSDPEVFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQPAK-GFA 294

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE   + + + LA   L+    G  P+LLLD++ A LD  +R AL + V     Q+ +
Sbjct: 295 SHGESWSMALSLRLAAYELL-RADGSDPVLLLDDVFAELDSARRQALAQ-VAASAEQVLV 352

Query: 348 TGT 350
           T  
Sbjct: 353 TAA 355


>gi|114561191|ref|YP_748704.1| DNA replication and repair protein RecF [Shewanella frigidimarina
           NCIMB 400]
 gi|122301223|sp|Q08A49|RECF_SHEFN RecName: Full=DNA replication and repair protein recF
 gi|114332484|gb|ABI69866.1| DNA replication and repair protein RecF [Shewanella frigidimarina
           NCIMB 400]
          Length = 360

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 83/373 (22%), Positives = 161/373 (43%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  +NI  FRN  S  L       +  G NG GKT+ILEAI FL  GR FR      V
Sbjct: 1   MSLSRINIGSFRNITSASLQPCDGLNLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                    + FA +   +    I ++     +  V+   I+   ++ +  L + L I  
Sbjct: 61  INND-DDKLTLFAHLIDADRDCKIGLRRHRSGEIEVK---IDGEKVKRLSTLAETLPIQV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +       RR+F+D   F  DP   +  ++  ++++ RN+LL       +   
Sbjct: 117 ITPESFSLLFEGPKARRQFIDWGAFHSDPHFYQAWVNTRKVLKQRNQLLRN-QSSYNQIQ 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++     ++   R + +++L+ ++++ +     P I + ++              K
Sbjct: 176 FWDKELVRYAEQVTDIRNQYVDSLN-VLLKGIIGVFLPRIDIKVSFTRGWDS-------K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            ++A+ L +    D  +  T  GPH++DL +   +     A  S G+ K+++  + +A  
Sbjct: 228 TDFAQLLENQYSRDLAAGNTGSGPHKADLRLRVGNLPAQDAL-SRGQLKLLVCALRIAQG 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETA- 362
           +L+        I L+D++ + LD   R  L +++T+ G+QIF+T  D     DSL+    
Sbjct: 287 KLLKQQLDKNSIYLVDDLPSELDAQHRQLLLQLLTETGAQIFVTAIDPQAIVDSLSSPPN 346

Query: 363 KFMRISNHQALCI 375
           +   +       I
Sbjct: 347 RMFHVEQGLVTVI 359


>gi|149370654|ref|ZP_01890343.1| DNA replication and repair protein RecF, ABC family ATPase
           [unidentified eubacterium SCB49]
 gi|149356205|gb|EDM44762.1| DNA replication and repair protein RecF, ABC family ATPase
           [unidentified eubacterium SCB49]
          Length = 359

 Score =  278 bits (712), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 90/373 (24%), Positives = 164/373 (43%), Gaps = 24/373 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  ++N+      FD     F G NGVGKTN L+AI  LS G+ +     +  
Sbjct: 1   MILNSLSLLNYKNFEVQTFEFDPNINCFTGHNGVGKTNALDAIYHLSFGKSYFNPITSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            R G       F  VEG     D   K+     +   + ++ N        +    L + 
Sbjct: 61  IRHGEE-----FFVVEGQYIKTDRPEKIVVSAKKGQKKVIKRNGKAYDRFSDHIGFLPLV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
            + P+   +    S  RR+F+D ++   D  + + ++ + +++  RN LL     + +W 
Sbjct: 116 IISPADRDLIIEGSDTRRKFIDGVISQGDSLYLKDILSYGKILVQRNSLLKYFAANHTWN 175

Query: 183 ---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
               +  + Q++ELG +I+ +R E +   + + +E  +  +     + L        D+ 
Sbjct: 176 KDNLAIYDLQLSELGERIHKSRKEFLKEFTPIFLEKYKAISSGTETVGLDYKSQLNEDR- 234

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                      L      D MS+ T +G H+ DLI    +  I    GS G+QK  L+ +
Sbjct: 235 -------MEHLLQQNVHKDKMSQYTSVGTHKDDLIFTIDEHPIK-KFGSQGQQKSFLIAL 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSV 354
            LA    I N     PILLLD+I   LDE++   + ++V D    Q+F++ T     ++V
Sbjct: 287 KLAQFEFIKNVHKVHPILLLDDIFDKLDEERVAHIIKLVDDENFGQLFISDTHADRTEAV 346

Query: 355 FDSLNETAKFMRI 367
              ++++ KF ++
Sbjct: 347 VKKVSQSYKFFKL 359


>gi|67458427|ref|YP_246051.1| recombination protein F [Rickettsia felis URRWXCal2]
 gi|67003960|gb|AAY60886.1| DNA replication and repair protein RecF [Rickettsia felis
           URRWXCal2]
          Length = 420

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 120/368 (32%), Positives = 189/368 (51%), Gaps = 9/368 (2%)

Query: 3   NRIK---IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           +++K   +  L +  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A
Sbjct: 55  HKMKNIFLHSLTLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSA 114

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             AD+ +          A ++   GLA+ + + +   +R  R  + N+  I   +EL+K 
Sbjct: 115 KLADICKASEDQCLVK-ALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKF 170

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             + WL P M+ IF+  S +RR+FLDR+V+  D +H   +  +E  M  RN++L E   D
Sbjct: 171 TSMVWLTPQMEGIFTSGSSDRRKFLDRIVYNFDSKHAELVSKYEYYMYERNKILAEDIRD 230

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +W   IE +MA++   I   R++ +  +   I E   +  FP   LS+ G ++ K    
Sbjct: 231 DNWLKIIEEKMADMSSHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQKILDG 288

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +      +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I
Sbjct: 289 KENIVNFITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAI 348

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA        T  APILLLDE+  HLD+ +R  L    T +  Q+++T TD    ++  
Sbjct: 349 ILAEMNYAIKLTKIAPILLLDEVFVHLDDKRRGYLIEFFTGLNMQLWVTATDLEGIENFA 408

Query: 360 ETAKFMRI 367
             A+ +++
Sbjct: 409 NKAQLIKL 416


>gi|190572095|ref|YP_001969940.1| recombination protein F [Stenotrophomonas maltophilia K279a]
 gi|226737840|sp|B2FT82|RECF_STRMK RecName: Full=DNA replication and repair protein recF
 gi|190010017|emb|CAQ43622.1| putative DNA replication and repair protein RecF [Stenotrophomonas
           maltophilia K279a]
          Length = 364

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 151/372 (40%), Gaps = 10/372 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L + + R ++++ L       +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MLIRRLALHQLRRFSAVDLSPQPGLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  +        E          K   R        +++   +  +  L   L +  
Sbjct: 61  VRQGQEALEIFVEWDEQRADHPPHRRKAGLRHSGQDWKGRLDGEDVAQLGNLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 121 FEPGSHALVSGGGEPRRRFLDWGLFHVEPDFLSLWRRYSRALKQRNALLKQGGPSR-MLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R   +  L    +        P + +        +    +   +
Sbjct: 180 TWDHELAEAGEPLTSRRQHYLERLQQRTVALAASL-APQLGIQ-----GLELSPGWRRHE 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T +GPHR+D  VD+       A  S G+ K+  +   LA A
Sbjct: 234 LPLADALLLARERDRQAGYTSVGPHRADWSVDFHSIPGRDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
              +   G  P++ LD++++ LD   +  +   + +  +QIF+T T+  +    L   A+
Sbjct: 293 EDYAEQRGEWPVIALDDLASELDRTHQARVLERLLNGPAQIFITATETPAALLDLTHIAR 352

Query: 364 FMRISNHQALCI 375
              + + Q + +
Sbjct: 353 -FHVEHAQIVAV 363


>gi|183219430|ref|YP_001837426.1| DNA replication and repair protein RecF [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189909576|ref|YP_001961131.1| recombinational DNA repair ATPase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|226737810|sp|B0S909|RECF_LEPBA RecName: Full=DNA replication and repair protein recF
 gi|226737811|sp|B0SK33|RECF_LEPBP RecName: Full=DNA replication and repair protein recF
 gi|167774252|gb|ABZ92553.1| Recombinational DNA repair ATPase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167777852|gb|ABZ96150.1| DNA replication and repair protein RecF [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 367

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 94/354 (26%), Positives = 169/354 (47%), Gaps = 13/354 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + I  FRN+   +L F ++   F+G+NG GKTN+LE+IS LS  + FR +    +
Sbjct: 1   MFLKKIYIKNFRNHEETQLTFKSRLVFFIGNNGEGKTNLLESISLLSYLKSFRESDQNQL 60

Query: 65  TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R   S +F       EG E L +  I+         + L++N    + + +   + R  
Sbjct: 61  LRWDTSDTFIRAEFESEGNEYLFEYGIE---HSQTKRKKLKVNGEEFKKISDYVGYFRSI 117

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    I    ++ERRRFLD  + + +  + +++I++ERL++ RN  L +        
Sbjct: 118 VMSPPDILIIEDGNVERRRFLDAFISSTNRYYLKQLIEYERLIKQRNAALKKENASDREI 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              +  + E   +I   R + I +L+    + + + +       LT        +     
Sbjct: 178 GIWDEPIIEHDSEIREIRTKTIQSLAGYFHQNLLQLSSGKDPYFLTY-------KPNITS 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           KEE+ +KL D  + D     T  G HR  L + + DK ++   GS G+++  ++ +  A 
Sbjct: 231 KEEHKQKLIDNLRKDKAIGYTSCGNHRDTLPIGFDDKDLS-GFGSQGQKRSAVIALKTAC 289

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            ++I +TTG AP+LL+D+I   LD  +R     ++++ G Q F T TD    + 
Sbjct: 290 FQMIRDTTGEAPVLLIDDIIRELDVKRREYFVNLISECG-QAFFTTTDLEGINE 342


>gi|240172093|ref|ZP_04750752.1| recombination protein F [Mycobacterium kansasii ATCC 12478]
          Length = 388

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 89/382 (23%), Positives = 160/382 (41%), Gaps = 26/382 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A   L      T+FVG NG GKTN++EA+ + S     R  + A +
Sbjct: 1   MYVRHLGLRDFRSWAHADLELHPGRTVFVGPNGFGKTNLIEALWYSSTLGSHRVGTDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       + ++ LE    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGADRAVISTIVVSDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVVGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179
             P    +  G   +RRR+LD +     P       D+++++R R  LL          D
Sbjct: 117 FAPEDLALVRGDPADRRRYLDDLATVRRPAVAAVRADYDKVLRQRTALLKSVAGARYRGD 176

Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP------HIKLSLTG 230
                     ++++AE G ++  AR+++++ L+  + +  Q             + S+T 
Sbjct: 177 RGVLDTLDVWDSRLAEHGAELMAARMDLVSQLAPEVAKAYQLLAPESRTASIEYRASMTS 236

Query: 231 FLDGKFDQSFCA----LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
            + G  +    A    L+      L   R  +      L+GPHR DL +   D+      
Sbjct: 237 VVPGSDEPDGTADRGYLEARLLAALAARRDAEVERGVCLVGPHRDDLELRLGDQPAK-GF 295

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE   + V + LA   L+    G  P+LLLD++ A LD  +R AL  +       + 
Sbjct: 296 ASHGESWSMAVALRLAAYELL-RVEGSDPVLLLDDVFAELDTRRRRALASVAESAEQVVV 354

Query: 347 MTGTDKSVFDSLNETAKFMRIS 368
                + +    +  AK ++I 
Sbjct: 355 TAAVPEDIPAGWD--AKRVQID 374


>gi|21326651|gb|AAL30091.1| RecF protein [Xanthomonas campestris pv. campestris]
          Length = 391

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/370 (21%), Positives = 146/370 (39%), Gaps = 9/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++     +   +  GDNG GKT++LEA+  ++ GR F       +
Sbjct: 24  MHVARLSIHRLRRFEAVEFHPASTLNLLTGDNGAGKTSVLEALHVMAYGRSFLGRVRDGL 83

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G           E      + + +   R        +++   +  +  L   L +  
Sbjct: 84  IRQGGQDLEIFVEWRERAGDSTERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 143

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 144 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPQMLD 202

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R++ +  L   ++        P + LS   F  G          
Sbjct: 203 AWDHELAESGETLTSRRLQYLERLQERLVPVATAI-APSLGLSALTFAPGWRRHEVS--- 258

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T  GPHR+D    +       A  S G+ K+  +   LA A
Sbjct: 259 --LADALLLARERDRQNGYTSQGPHRADWAPLFDALPGKDAL-SRGQAKLTALACLLAQA 315

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
              ++  G  PI+ LD++ + LD   +  + + +    +Q+ +T T+         +T +
Sbjct: 316 EDFAHERGEWPIMALDDLGSELDRHHQARVIQRLASAPAQVLITATELPPGLADAGKTLR 375

Query: 364 FMRISNHQAL 373
              + + Q +
Sbjct: 376 RFHVEHGQLV 385


>gi|295101861|emb|CBK99406.1| recF protein [Faecalibacterium prausnitzii L2-6]
          Length = 373

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/381 (22%), Positives = 158/381 (41%), Gaps = 28/381 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RN AS  L    + T+  G+NG GKTN+LEAI  L+ G+ FR    A++
Sbjct: 1   MRLLSLEVENYRNIASASLTPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETR-------DDRSVRCLQINDVVIRVVDELN 117
            R G P      + +   +   +       R         R  R + +N   ++    L 
Sbjct: 61  VRRGEPFAVLKASTLRAQQEEQETEEPNRIRLTVGAPDSPRPGRTVSVNGGAVKRAASLA 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG- 176
                    P    +  G    RR+FLD  +  + P +      + R ++ +N LL    
Sbjct: 121 GSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLTLYRRYVRALQQKNALLRRSS 180

Query: 177 -------YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
                      +    +  ++A+ G  I   R   + ALS L     ++ +     LSL 
Sbjct: 181 NGIERPYAEKRALLEVLNLELAQQGEAIQQRRRAYLAALSPLACANYEELSRGAETLSLR 240

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
                +F+          A+ L      +  + ++L GPHR DL +   D      + S 
Sbjct: 241 YA--AQFEPGG------LARLLQQKMPEELRAGQSLCGPHREDLDL-LLDGQPAKVYASQ 291

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q+ V++ + +A A   ++ TG  P++LLD++ + LD+ ++  L   + +   Q F+T 
Sbjct: 292 GQQRSVVLSLKMAEAAAAASITGEHPVMLLDDVLSELDDGRKQYLLTRMREK--QTFVTS 349

Query: 350 TDKSVFDSLNETAKFMRISNH 370
            D + F  L    +  R++  
Sbjct: 350 CDDTAF--LKTDGEVYRMNGG 368


>gi|282881774|ref|ZP_06290432.1| DNA replication and repair protein RecF [Peptoniphilus lacrimalis
           315-B]
 gi|281298384|gb|EFA90822.1| DNA replication and repair protein RecF [Peptoniphilus lacrimalis
           315-B]
          Length = 358

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 92/356 (25%), Positives = 154/356 (43%), Gaps = 11/356 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + + F+ +  FRNY SL+L       I  G N  GKTN+LEAI        F+     D+
Sbjct: 1   MNLSFIGLYNFRNYKSLKLNTGPNINIIYGKNASGKTNLLEAIYMTCKAYSFKNPRDNDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                          E      +  I++   +   ++   IN+      D   +   I  
Sbjct: 61  INFSKNEAC-ILGTYENNCYKDNYRIEITRNN---IKKYFINEQKTNSKD-FRQARHIVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    I      +RRRF+D  +  ID  +   +  + +++  RN+LL     + S   
Sbjct: 116 FSPVDLNIIKNSPSDRRRFIDESLSNIDLSYDYYLSQYRKILMERNKLLK-ISKNMSLLE 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + +++++G KI I R+  I  L+    ++ Q  +  + +L  T         +   ++
Sbjct: 175 IYDRELSKIGSKIIIMRLIAIKELNKYANKHYQNLSK-NDRLKTTYLSTIPLSSNEEEIR 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +   L   +  D   + T IGPHR D+     DK+ T A GS GEQ+ V++ + L+  
Sbjct: 234 ENFYNFLKLNQYKDFQRKNTSIGPHRDDIDFKINDKS-TKAFGSQGEQRSVVLSLKLSEF 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359
            LI        ILLLD++ + LDE +   L   + D  +Q F+T T+ K  F +LN
Sbjct: 293 DLIYKKFNDKSILLLDDVFSELDEKRTLYLLDSIKD--TQTFITTTEFKDYFKNLN 346


>gi|89891571|ref|ZP_01203075.1| DNA replication and repair protein RecF [Flavobacteria bacterium
           BBFL7]
 gi|89516118|gb|EAS18781.1| DNA  replication and repair protein RecF [Flavobacteria bacterium
           BBFL7]
          Length = 359

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 165/372 (44%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + + FL++  +++++S     D +   FVG+NGVGKTN+L+AI  L+  + +        
Sbjct: 1   MHLDFLSLVNYKSFSSAEFELDEKINCFVGNNGVGKTNVLDAIYHLAFAKSYFNPITVQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     FF      +  E    + +  +       R ++ N      + E    + +  
Sbjct: 61  IKHDQD-FFVINGNFQKKENQEKVVVSAKRGHK---RVVKRNGKAYEKLSEHIGLIPLVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   +    S  RRRF+D ++   +  +  +++ + +L++ RN LL        FD 
Sbjct: 117 ISPADRDLIIEGSDTRRRFMDSVISLDNQDYLNQLVTYNKLIQQRNALLKYFQANRTFDR 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +     + Q+  L   I+  RV+ + + + +  +Y    +     +++      K D + 
Sbjct: 177 AGLEVYDEQLIVLATFIHKTRVQFLESFTPIFKKYYAYISQSEEDVNIYY----KSDLND 232

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            A KE +   L    + D   + +  G H+ DL       A+   +GS G+QK  L  + 
Sbjct: 233 TAAKEVFESAL----QKDMQLQYSSAGTHKDDLYFLLNGHAVK-KYGSQGQQKSFLTALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS----VF 355
           LA    I + +G  PILLLD+I   LDE++ + +  +V D    Q+F++ T       V 
Sbjct: 288 LAQFEFIKSQSGTVPILLLDDIFDKLDENRVSQIINMVNDEQFGQLFISDTHPERTEQVV 347

Query: 356 DSLNETAKFMRI 367
             ++++ K  ++
Sbjct: 348 KEIHQSYKIFKL 359


>gi|186686202|ref|YP_001869398.1| recombination protein F [Nostoc punctiforme PCC 73102]
 gi|226737816|sp|B2IVZ4|RECF_NOSP7 RecName: Full=DNA replication and repair protein recF
 gi|186468654|gb|ACC84455.1| DNA replication and repair protein RecF [Nostoc punctiforme PCC
           73102]
          Length = 374

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 89/377 (23%), Positives = 168/377 (44%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K LN+ +FRNY   ++ F A  TI VG+N  GK+N+LEA+  L+  R  R     D+
Sbjct: 1   MYLKTLNLRQFRNYQDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMTRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +     A +E   G++D+++ L     RSV    +N   IR   +    L    
Sbjct: 61  VQEG-EAIAQINATLERQTGVSDLTLTLRRNGRRSV---ALNGESIRRQMDFLGVLNAVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GYF 178
                  +  G    RR +LD ++  ++P +   +  +  ++R RN  L           
Sbjct: 117 FSSLDLDLVRGGPEGRRNWLDTLLIQLEPVYAHILQQYNHVLRQRNAFLKRHVETLDATS 176

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KFD 237
             S  +  +AQ+A  G ++   R   I  L+ +   +    +     L +    +    D
Sbjct: 177 LHSELAVWDAQLATTGTRVIRRRDRAIQRLAPIASAWHASISGSTEALQIKYLPNIPSED 236

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                +++ +  K+      +     TL+GPHR ++ +   ++     +GS G+Q+ +++
Sbjct: 237 NHPEEVQQAFLVKIQQRAIAELHQGTTLVGPHRDEIELTI-NQTPARQYGSQGQQRTLVL 295

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA  +LI       P+LLLD++ A LD  ++N L   + D   Q  +T T    FDS
Sbjct: 296 ALKLAELQLIEEVVKEPPLLLLDDVLAELDLSRQNQLLDAIQD-RFQTLITTTHLGSFDS 354

Query: 358 -LNETAKFMRISNHQAL 373
              ++++ + +   + +
Sbjct: 355 QWLKSSQILFVKAGEII 371


>gi|15891955|ref|NP_359669.1| recombination protein F [Rickettsia conorii str. Malish 7]
 gi|20978615|sp|Q92JN5|RECF_RICCN RecName: Full=DNA replication and repair protein recF
 gi|15619066|gb|AAL02570.1| RecF protein [Rickettsia conorii str. Malish 7]
          Length = 360

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 121/361 (33%), Positives = 189/361 (52%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LN+  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  A+V +
Sbjct: 6   LHSLNLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCK 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S       A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL 
Sbjct: 66  T-SEDHCLVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P M+ IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   I
Sbjct: 122 PHMEGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDRRDDNWLKII 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA++   I   R++ +  +   I +   +  FP   LS+ G ++ K       +   
Sbjct: 182 EEKMADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKKNIVSF 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
              +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
               T  APILLLDE+  HLD+ +R  L   +T +  Q+++T T+    D+    A+ ++
Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIDNFATKAQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|145221418|ref|YP_001132096.1| recombination protein F [Mycobacterium gilvum PYR-GCK]
 gi|189039630|sp|A4T4U1|RECF_MYCGI RecName: Full=DNA replication and repair protein recF
 gi|145213904|gb|ABP43308.1| DNA replication and repair protein RecF [Mycobacterium gilvum
           PYR-GCK]
          Length = 389

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/363 (23%), Positives = 154/363 (42%), Gaps = 25/363 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +++FR+++ + L      T+FVG NG GKTN++EA+ + +     R AS A +
Sbjct: 1   MYVRHLALTDFRSWSRVELELSPGRTVFVGPNGFGKTNLVEALWYSATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       ++++ L+    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGAERAVVSTIIVNEG---RELAVDLDITSGRANKA-RLNRSPVRSAREILGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G   +RRR+LD +     PR      D+++++R R  LL           
Sbjct: 117 FAPEDLALVRGDPGDRRRYLDELATTRRPRIAAVRADYDKVVRQRTALLKTASSARFRGD 176

Query: 181 ----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                     +  +A  G ++  ARV++++ L+  + +  Q    P  + +   +  G  
Sbjct: 177 RGALETLDVWDGHLAAHGAQLIAARVDLVHELAPEVEKAYQ-LLAPASRPATVRYRSGVE 235

Query: 237 ---------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
                    +      +      L   R  +      L+GPHR DL +   D+       
Sbjct: 236 VVEAEAAAGNSDPEVFEAALLDALSRRRDAELERGVCLVGPHRDDLELRLGDQPAK-GFA 294

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE   + + + LA   L+    G  P+LLLD++ A LD  +R AL + V     Q+ +
Sbjct: 295 SHGESWSMALSLRLAAYELL-RADGSDPVLLLDDVFAELDSARRQALAQ-VAASAEQVLV 352

Query: 348 TGT 350
           T  
Sbjct: 353 TAA 355


>gi|326802597|ref|YP_004320416.1| DNA replication and repair protein recF [Sphingobacterium sp. 21]
 gi|326553361|gb|ADZ81746.1| DNA replication and repair protein recF [Sphingobacterium sp. 21]
          Length = 365

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 157/377 (41%), Gaps = 22/377 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  F+NY    L F      F GDNG GKTNIL+A+ +LS  + +     +  
Sbjct: 1   MWVKELTVINFKNYEEASLTFAPGVNAFTGDNGAGKTNILDALHYLSLCKSYFNPIDSQQ 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +  FF      E  +    ++  L+    +  +  + +    + + +      +  
Sbjct: 61  IKQQAD-FFMVQGVFEKGDQEDVLACSLKRNQKKQFKKNKKD---YQRLADHIGVYPLVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG----YFDS 180
           + P+   I S  S ERR+F+D ++   D R+   +I + + ++ RN LL +      +D 
Sbjct: 117 ISPNDSFIISEGSEERRKFIDNVISQTDNRYLDDLILYNKYLQSRNSLLKQQALSKNYDD 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              +    Q+  +G +I   R   IN    +  ++ Q        + L            
Sbjct: 177 DLLAVYNEQLVLVGEQIFEKRKLFINPFIEIFNKHYQHLTNDTEPVELVY--------ES 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              +  +   L +    D    RT  G H+ DL+       +    GS G+QK  L+ + 
Sbjct: 229 QLFENRFVDLLNNTLSKDRALERTTTGIHKDDLLFTIHGMPLK-KFGSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTD----KSVF 355
           LA    +    GF P+LLLD+I   LD+ +   L  +V+ D   QIF+T T     ++ F
Sbjct: 288 LAQYSFLRERKGFKPLLLLDDIFDKLDDKRTRKLMEMVSHDDFGQIFITDTSAERVRNTF 347

Query: 356 DSLNETAKFMRISNHQA 372
             ++   +   +SN + 
Sbjct: 348 HGIDVDVRIFEVSNGKI 364


>gi|150026041|ref|YP_001296867.1| DNA replication and repair protein RecF [Flavobacterium
           psychrophilum JIP02/86]
 gi|226737800|sp|A6H141|RECF_FLAPJ RecName: Full=DNA replication and repair protein recF
 gi|149772582|emb|CAL44065.1| DNA replication and repair protein RecF [Flavobacterium
           psychrophilum JIP02/86]
          Length = 359

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 159/372 (42%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  F+N++     F+ +   FVG NGVGKTN+L+AI  LS G+ +        
Sbjct: 1   MYLKKISLFNFKNFSDTSFNFEHKINCFVGKNGVGKTNVLDAIYHLSFGKSYFNTLAVQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     FF      +  E   +I   L+       + L+ N  +     +    + +  
Sbjct: 61  IKHDED-FFVIDGEFDKQERSENILCSLK---KGQKKILKRNGKIYEKFSDHLGFIPLVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   +    S  RR+F+D ++  +D ++ + +I +++++  RN LL        F++
Sbjct: 117 ISPTDADLIREGSETRRKFIDSVISQLDNQYLQGLILYQKVLSQRNALLKYFAVNRIFET 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                   Q+ +LG  I   R + +N    +   + Q  +     + L      +     
Sbjct: 177 GTLDIYNEQLNDLGQSIFEKRKQFLNDFIPIFNSFYQNISNSAETVQLEYESQLE----- 231

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              K++    L +    D   + T +G H+ DL  +     I    GS G+QK  L+ + 
Sbjct: 232 ---KQDLLSLLQENINKDRSLQYTSVGVHKDDLSFNIAHYPIK-KFGSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTD----KSVF 355
           LA    +   +G  PILL D+I   LDE +   +  +V  D   Q+F++ T     +++ 
Sbjct: 288 LAQFEFVKKQSGEKPILLFDDIFDKLDETRVEKIVAMVNNDDFGQLFISDTHSQRTENIV 347

Query: 356 DSLNETAKFMRI 367
              +++ K   +
Sbjct: 348 KMTHQSYKIFNL 359


>gi|329113487|ref|ZP_08242268.1| DNA replication and repair protein RecF [Acetobacter pomorum DM001]
 gi|326697312|gb|EGE48972.1| DNA replication and repair protein RecF [Acetobacter pomorum DM001]
          Length = 382

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 131/366 (35%), Positives = 193/366 (52%), Gaps = 4/366 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L +S FRNY  L    +A   +  G+NG GKTN+LEA+S LSPGRG R A      
Sbjct: 13  RLLKLTLSNFRNYERLVWSPNASLLVLTGENGSGKTNLLEAVSLLSPGRGLRAAPLTQFG 72

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           R+G+ + +   AR+E  +   ++    +   +R  R   +N   IR  +     L   W+
Sbjct: 73  RMGAIN-WGVSARIETKDEFLELGTGTQGGQERPRRVFLLNGRQIRGQEAWEDTLATVWI 131

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P MDR+FS  +  RRRFLDR+V A+ P H R +  ++R M  RNRLL   + + SW S 
Sbjct: 132 TPQMDRLFSEGASGRRRFLDRLVMAVTPHHARELAAYDRAMTQRNRLLQTRFSEHSWLSG 191

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +EA MA   V +  AR E +  +       +    FP    +L   +  K + S     E
Sbjct: 192 LEASMARHAVAVAAARQETVRQICHYAQNGL--GAFPAAIATLQCAIAQKLETSPALTVE 249

Query: 246 EYA-KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           ++   KL + R+ D+   R   G HRSD +++        A  STG+QK +L+GI LAHA
Sbjct: 250 DWLCAKLAELREDDAARGRATFGTHRSDFLLEDLSSRQPAALASTGQQKSLLIGIVLAHA 309

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           RL+++  G  PILLLDE   HLD  +R +L  IV D  + + +TGTD++ F  L  +A+F
Sbjct: 310 RLVTDYRGQPPILLLDEPLVHLDAARRASLLEIVQDFRTTVLLTGTDQAPFAPLKHSAQF 369

Query: 365 MRISNH 370
             + N 
Sbjct: 370 ETLKNG 375


>gi|218283253|ref|ZP_03489314.1| hypothetical protein EUBIFOR_01903 [Eubacterium biforme DSM 3989]
 gi|218216008|gb|EEC89546.1| hypothetical protein EUBIFOR_01903 [Eubacterium biforme DSM 3989]
          Length = 363

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/369 (22%), Positives = 154/369 (41%), Gaps = 12/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + ++ L    FRNY ++   F  +      G N  GKTN++EAI FLS  R FR      
Sbjct: 1   MNVEKLTCFHFRNYETMSFSFVPKCIHFLYGKNAQGKTNLIEAIYFLSHLRSFRTNQMDS 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +   G   F    A VE      ++ + ++ +     R        ++   +        
Sbjct: 61  MIMHGCNEFC-VQAIVESNHRKEELKVIVDHQKKHLFRF----QNPVKKYSDFIGIENAI 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    +F+     RRRF+D  +  +   +   +  +++L++ RN+ L +   D    
Sbjct: 116 LFCPDDLSLFTSSPKNRRRFIDMELMKLSRTYTSTLSSYQKLLKQRNQALKQSNIDECLV 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                QM E+   I   R E +N+L +   E     +    ++          D    + 
Sbjct: 176 QIYLDQMIEVQSVIIKQRNEFLNSLMNKARELYPFFSNEKEEIGAKYMTFIPIDPDMKSH 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +E   K+F+    +    +TLIG HR D++ +  +  +     S G+++  ++ + L  
Sbjct: 236 MKEAYDKVFE---KEKRYHQTLIGIHRDDILFELNENPV-CEVASQGQKRSFVLALKLGL 291

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           A++I   +G  PILLLD++ + LD+ ++  L   +     QIF+T T++   +  N   +
Sbjct: 292 AQIIYEKSGQYPILLLDDVFSELDDFRKRQLIEKLPR-DMQIFITTTERLNIN-WNREVR 349

Query: 364 FMRISNHQA 372
           F  I   + 
Sbjct: 350 FYDIEKGRI 358


>gi|254449439|ref|ZP_05062876.1| DNA replication and repair protein RecF [Octadecabacter antarcticus
           238]
 gi|198263845|gb|EDY88115.1| DNA replication and repair protein RecF [Octadecabacter antarcticus
           238]
          Length = 341

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 121/343 (35%), Positives = 181/343 (52%), Gaps = 9/343 (2%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
             G NG GKTNILEA+S LSPGRG RRAS  ++TR      +   A +  +    ++   
Sbjct: 3   IYGPNGAGKTNILEAVSILSPGRGLRRASSEEMTRRPEALGWKVTADLTSLNKRHEVEAW 62

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
            E    R  +     D        L +  R+ WL+P+MDR++   +  RRRFLDR   + 
Sbjct: 63  SENGASRQTKI----DGKAAAQTALGRIGRVLWLIPAMDRLWIEAAEGRRRFLDRATLSF 118

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
           +P H    + +E+ MR RNRLL +   D+ W +++E QMA+ G +I+  R++ I+ L+  
Sbjct: 119 EPMHADAALTYEKAMRERNRLLKDMVRDAHWYTALERQMADAGAQIHRNRMQAIDLLTD- 177

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
             +   +  FP   L+LT            A        L   R  D  + RTLIGPHR+
Sbjct: 178 -AQQAAQTAFPIALLTLTHSDPVCDAPDDPAAL---LAALAGNRPRDMAAGRTLIGPHRA 233

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           DL   +  K +     STGEQK +L+ + LA+AR +++  G  PILLLDE++AHLD  +R
Sbjct: 234 DLGAIFAAKDVPAKDCSTGEQKALLISLILANARALADDFGAPPILLLDEVAAHLDATRR 293

Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
            AL+  +T +G+Q FMTGT   +F  L   A++  ++    + 
Sbjct: 294 AALYSEITALGAQAFMTGTGPELFGELGTAAQYAYVTEENGVS 336


>gi|78045559|ref|YP_361734.1| recombination protein F [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|97181094|sp|Q3BZS9|RECF_XANC5 RecName: Full=DNA replication and repair protein recF
 gi|78033989|emb|CAJ21634.1| DNA replication and repair protein RecF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 368

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 144/369 (39%), Gaps = 9/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MHVVRLSIHRLRRFHTVELHPSSTLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+          EG     + + +   R        +++   +  +  L   L +  
Sbjct: 61  IQQGANDLEVFVEWKEGNGAAGERTRRAGLRHRGQEWTGRLDGEDVAQLGALCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLTMWRRYARALKQRNALLKQG-AQPRMLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R   +  L   ++        P + LS   F  G          
Sbjct: 180 AWDHELAESGESLTSRRTRYLERLQERLVPVADAI-APALGLSALTFAPGWKRHEVS--- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T  GPHR+D +  +       A  S G+ K+  +   LA A
Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWVPSFQALPGRDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
              +   G  P++ LD++ + LD   +  + + +    +Q+ +T T+            +
Sbjct: 293 EDFAYERGEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATETPPGLADAGALLQ 352

Query: 364 FMRISNHQA 372
              + +   
Sbjct: 353 QFHVEHGHI 361


>gi|297625207|ref|YP_003686970.1| DNA replication and repair protein recF [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296920972|emb|CBL55509.1| DNA replication and repair protein recF [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 433

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/402 (20%), Positives = 152/402 (37%), Gaps = 44/402 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FR+Y + +L      ++FVG NG GKTN++EA+ +LS     R ++ A +
Sbjct: 1   MFVDHLELKDFRSYEAAKLDIGPGVSVFVGPNGHGKTNLVEAVEYLSTLSSHRVSADAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+         V G +    + ++LE    R+    +IN   +R + +    LR   
Sbjct: 61  IRAGTSQAIVRALVVAGRDDPRKLLLELEINAGRAN-HARINRAPVRRMRDFIGALRTVV 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P    +  G   +RR FLD +V    PR      D++R++R RN LL           
Sbjct: 120 FSPEDLAMVKGDPTDRRAFLDALVITRWPRLAGVKSDYDRVLRQRNTLLKTLARRSSRVD 179

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------ 230
             D +       ++A+ G ++  AR+  ++ L              + ++          
Sbjct: 180 GGDVATLDVWNERLAQFGAELLAARLATLSDLMPYARASYAAIAPVNNRVDARYKSSLSG 239

Query: 231 ----------FLDGKFDQSFCALKEE-------------YAKKLFDGRKMDSMSRRTLIG 267
                        G+  ++     E                  +   R  +     TL+G
Sbjct: 240 LSELLGYATDGAPGELPEAPDTDDEVRTPAPGPDQLAVLMMDAMAARRGDELARGVTLVG 299

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           PHR D+ +          + S GE   + + + L    ++       P+L+LD++ A LD
Sbjct: 300 PHRDDVTLTI-GTLPAKGYASHGESWSLALALRLGSLDML-RADDVEPVLVLDDVFAELD 357

Query: 328 EDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368
             +R+ L   V     Q+ +T      V   L    +   + 
Sbjct: 358 VTRRDRLADAVAKAE-QVLVTAAVGSDVPGQL--NGQRFDVD 396


>gi|156742186|ref|YP_001432315.1| DNA replication and repair protein RecF [Roseiflexus castenholzii
           DSM 13941]
 gi|189039636|sp|A7NF69|RECF_ROSCS RecName: Full=DNA replication and repair protein recF
 gi|156233514|gb|ABU58297.1| DNA replication and repair protein RecF [Roseiflexus castenholzii
           DSM 13941]
          Length = 394

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 95/391 (24%), Positives = 178/391 (45%), Gaps = 27/391 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FRNY  L L  +   T+  G N  GKT +LEAI FL+  R  R  +  ++
Sbjct: 1   MYVTHLSLRDFRNYERLDLNLEPGVTLLYGPNAAGKTTVLEAIYFLATTRSPRAGADREL 60

Query: 65  TRIGSPS------FFSTFARVEGMEGLADISIKLETRDDR--------SVRCLQINDVVI 110
            R  +        F      V   +G   + + ++ R +         +++ ++I+   +
Sbjct: 61  VRFEAQGDLGVPPFARLVCDVVRADGYVRLEVVVQRRAEEESAIGATPTIKTVRIDRKAV 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           R +D L  +LR+    P+   + +G   ERRR+LD  +  ID R+ R +  ++++++ RN
Sbjct: 121 RALD-LVGNLRVVLFTPADIALVTGAPAERRRYLDVTLSQIDGRYVRTLAHYQKVVQQRN 179

Query: 171 RLLTEG-------YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
            LL           +     +  + ++A  G  +   R+  +  L++L      + +   
Sbjct: 180 SLLRAWREGRRPLRYADDELAFWDRELAMAGAYLLRERLHAVVDLNALAGPLYCRMSGGD 239

Query: 224 IKLSLTGFLDGKFDQSFC---ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
             L+L          S     A+++ +   L   R  +    +TLIGPHR DL++     
Sbjct: 240 TPLTLAYQSSVAGIDSVTDSRAIEQAFLAHLTRLRDDEIGRGQTLIGPHRDDLLIAVGGV 299

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
            I   +GS G+Q+   + + L  A+L+   TG AP+LLLD++ + LD ++R+ +  I+  
Sbjct: 300 PIGA-YGSRGQQRSATLSLKLGEAKLMRIRTGDAPVLLLDDLLSELDAERRSHVQDILER 358

Query: 341 IGSQIFMTGTDKSVFD-SLNETAKFMRISNH 370
              Q  +T T    FD      A+  R+ + 
Sbjct: 359 PDQQTIVTATGTDDFDLKFLTRARRWRVESG 389


>gi|295691339|ref|YP_003595032.1| DNA replication and repair protein RecF [Caulobacter segnis ATCC
           21756]
 gi|295433242|gb|ADG12414.1| DNA replication and repair protein RecF [Caulobacter segnis ATCC
           21756]
          Length = 387

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 132/378 (34%), Positives = 204/378 (53%), Gaps = 16/378 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            +  L +++FR+Y   RL    +     G NG GKTN+LEAIS L+PG+G R A+ A+V 
Sbjct: 5   ALLSLTLTDFRSYERARLETSGRSVYLFGPNGAGKTNLLEAISLLTPGKGLRGANLAEVG 64

Query: 66  RI--GSPSF--FSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           R   G  +   ++  A VE G +    I   +E +   S R ++++   +     L  H+
Sbjct: 65  RRLPGEATGRPWAVAAEVESGPDAPVRIGTGVE-QGGASRRTVRLDGETV-SPGRLADHV 122

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TE 175
           R  WL P+ DR+F   + ERRRF DR+VFA +P+H      +++  R R RLL       
Sbjct: 123 RPIWLTPAQDRLFLEAASERRRFFDRLVFAGEPQHAANANAYDKAQRERMRLLIEAVERG 182

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
              D++W +++EA++AE G  +  AR   + AL + I     +  FP  +L+LTG  +  
Sbjct: 183 APPDATWLNALEARLAESGALMAQARARTLQALQAEIDGRGDR-PFPQARLTLTGDWEKL 241

Query: 236 FDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             +   F  ++E+ A  L   R  D  + R L GPHR DL + + +K    A  STGEQK
Sbjct: 242 ALEGVPFAEIEEKLAAALLSARARDGAAGRALTGPHRGDLAIFHVEKDRPAAECSTGEQK 301

Query: 294 VVLVGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            +++ + LA  ARL    +   P++LLDE++AHLD  +R AL   +T +  Q F+TGTD+
Sbjct: 302 ALILNLVLAQAARLSRAESAPNPVILLDEVAAHLDLARRAALADELTALKLQAFLTGTDE 361

Query: 353 SVFDSLNETAKFMRISNH 370
           S+FD L   A  +R+ + 
Sbjct: 362 SLFDHLKGRALGVRVCDA 379


>gi|169830222|ref|YP_001716204.1| DNA replication and repair protein RecF [Candidatus Desulforudis
           audaxviator MP104C]
 gi|226737788|sp|B1I1H6|RECF_DESAP RecName: Full=DNA replication and repair protein recF
 gi|169637066|gb|ACA58572.1| DNA replication and repair protein RecF [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 360

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 145/370 (39%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  +    FRN+  L +   A   I  G N  GKTN +EA+ F   G  FR     ++
Sbjct: 1   MRLTRIKAGNFRNFQHLDVQPAAGLNIVRGRNAQGKTNFIEAVFFALRGHSFRSLRDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  S F   A +EG +G   +  +L     + V         +    EL   L    
Sbjct: 61  VTWGQESAF-VEAELEGKDGRTRVRAELNPAGKKIVWA----GEPVGKA-ELAVRLGTVL 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSW 182
             P    +  G   ERRRFLD  +    P +   +  + R +  RN LL    G   S  
Sbjct: 115 FTPDDLSLIKGGPRERRRFLDLELGIFVPGYLTALQLYRRALEQRNHLLRMGGGRRYSEL 174

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
                 ++ + G+ +   R+E++   + L            + +     + G  +     
Sbjct: 175 LDLWTDEVCKYGMMLLSGRLEILKEFAPLACRLFGAWAGEELAVRYRSSV-GLSNGVRTP 233

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
              +  + L   R+ +  + +T  GPH  DL      K       S G+Q+ V++ + LA
Sbjct: 234 GAGDLRETLAAVRQDEIRAGQTQAGPHLDDLAFMVNGKE-GRPFASQGQQRSVVLALKLA 292

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              L    TG AP++LLD++    D ++R+ +   + +   Q+F+T  ++     +   +
Sbjct: 293 QVFLWKRHTGEAPVVLLDDLLFEFDRERRDKVLETLQN-DVQVFITTGER-----VLSGS 346

Query: 363 KFMRISNHQA 372
           +   + +   
Sbjct: 347 RVFCVHSGNI 356


>gi|313676601|ref|YP_004054597.1| DNA replication and repair protein recf [Marivirga tractuosa DSM
           4126]
 gi|312943299|gb|ADR22489.1| DNA replication and repair protein RecF [Marivirga tractuosa DSM
           4126]
          Length = 367

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 165/378 (43%), Gaps = 23/378 (6%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++K++ + +++F+NY      F      F+G NG+GKTN+L+AI +L+  +    A   D
Sbjct: 3   KMKLQNIRLAQFKNYPQANFSFVDGINCFLGRNGIGKTNLLDAIYYLAFTKSAFNAIDKD 62

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  +FFS  A  E  +   ++   +   + + VR           + E    L + 
Sbjct: 63  NILH-EEAFFSIKANFEVEDKNIEMLCAVRLGEKKVVRW---GGKEYEKLSEHIGKLPLV 118

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179
            +VP    I    S  RR+F D ++  +D  + + ++++  L++ RN LL     +  F 
Sbjct: 119 MIVPQDTDIVREASEMRRKFFDNLLCQLDQEYLKLLVNYNHLLKQRNALLKSFLEKNRFS 178

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
           +   +  +  M  L +KI+  R +++     +  E+ +  +    ++++           
Sbjct: 179 ADQLAPYDELMIPLAMKISDERNKLMENFLPIFQEFYKDLSDNQEEVAINY--------- 229

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              + + +        + D    RT +G H+ D +     K +    GS G+QK  ++ +
Sbjct: 230 DTRVTKSFQSDFKGQHQKDFRQGRTTMGIHKDDYVFLSEGKPVK-KFGSQGQQKSFVIAL 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGT----DKSV 354
            LA   L+ +T    P+LLLD+I   LD+ +   L +++ D    QIF+T       K  
Sbjct: 289 KLAQFELLKSTKNQKPLLLLDDIFDKLDDKRIAYLLKMMADGRFGQIFLTDARPERSKEY 348

Query: 355 FDSLNETAKFMRISNHQA 372
              ++   KF  +  ++A
Sbjct: 349 LKKIDTEKKFFELDLNRA 366


>gi|119714276|ref|YP_921241.1| recombination protein F [Nocardioides sp. JS614]
 gi|166220721|sp|A1SCL9|RECF_NOCSJ RecName: Full=DNA replication and repair protein recF
 gi|119534937|gb|ABL79554.1| DNA replication and repair protein RecF [Nocardioides sp. JS614]
          Length = 420

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 91/425 (21%), Positives = 158/425 (37%), Gaps = 64/425 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+YA+  +      T F+G NG GKTN++EAI +LS     R AS A +
Sbjct: 1   MYVAHLSLHDFRSYATAEVELSPGVTAFIGRNGQGKTNLVEAIDYLSRLSSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       A V          +++E    RS R  ++N   +    +L   +R   
Sbjct: 61  VRAGADQAVVRAAVVRDGRTAV---LEVELNPGRSNRA-RVNRSPLPRARDLVGLVRTVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   +RRRFLD ++    PR      D++R++R RN LL           
Sbjct: 117 FSPEDLTLVKGDPADRRRFLDDLLVLRVPRLAGVRADYDRVLRQRNTLLKTARKGGFARK 176

Query: 178 ---------------------------------------FDSSWCSSIEAQMAELGVKIN 198
                                                        +  +A +A  G ++ 
Sbjct: 177 GGFARKGGFAPLGPPEGRPEGPPEGRTGGSATSGPPSRSVALDTLAVWDAHLARTGAELL 236

Query: 199 IARVEMINALSSLIMEYVQKENFPH----IKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
             R+ ++ AL   + +  +           ++      D +       L E    ++   
Sbjct: 237 AERLALVEALRPYVGKAYETVARGATRDDAEIDYKPSFDLEGRTGRDDLVEALLAEVERR 296

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAIT-----IAHGSTGEQKVVLVGIFLAHARLISN 309
           R  +     +L+GPHR +L++     +         + S GE     + + LA   L+  
Sbjct: 297 RGDELDRGVSLVGPHRDELLLTLGHGSPDSRLPVKGYASHGESWSFALALRLAAYDLL-R 355

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368
             G  PIL+LD++ A LD ++R  L  +V     Q+ +T      V   L        + 
Sbjct: 356 ADGDDPILILDDVFAELDTERRAQLADLVAGAE-QVLVTAAVAADVPAGL--AGARFAVG 412

Query: 369 NHQAL 373
           N + L
Sbjct: 413 NGEVL 417


>gi|289667647|ref|ZP_06488722.1| recombination protein F [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 368

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 149/370 (40%), Gaps = 13/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++ L   +   +  G+NG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MHVVRLSIHRLRRFQTVELHPASALNLLTGNNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+          EG     + + +   R        +++   +  +  L   L +  
Sbjct: 61  IQQGANDLEVFVEWKEGSGVAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPRMLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R+  +  L   ++        P + LS   F  G          
Sbjct: 180 AWDHELAESGETLTSRRMRYLERLQDRLIPVAGAI-APSLGLSALAFAPGWKRHEVS--- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T  GPHR+D +  +       A  S G+ K+  +   LA A
Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWMPRFDVLPGKDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA-- 362
              +   G  P++ LD++ + LD   +  + + +    +Q+ +T T+      L + A  
Sbjct: 293 EDFAFERGEWPVIALDDLGSELDRHHQARVLQRLVSAPAQVLITATET--PPGLVDAAAL 350

Query: 363 -KFMRISNHQ 371
            +   + + Q
Sbjct: 351 LQRFHVEHGQ 360


>gi|237784640|ref|YP_002905345.1| DNA replication and repair protein RecF [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757552|gb|ACR16802.1| DNA replication and repair protein RecF [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 429

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 88/397 (22%), Positives = 154/397 (38%), Gaps = 41/397 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +  FR++  L L      T+F G NG GKTN++EA+ +++     R ++ A +
Sbjct: 1   MYIRALQLRNFRSWPELDLHLGPGITVFSGPNGHGKTNVVEALDYVAHLGSHRVSTDAPL 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   +  S  A   G E  A + IK      R     QIN    +   +L   ++  
Sbjct: 61  VREGREYTTVSATAINSGRELTAHMLIK-----ARGSNKAQINRAPCKSPRQLLGIVKTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178
              P    +  G    RRRFLD ++    PR      D+++++R RN LL          
Sbjct: 116 LFSPEDLALVRGEPEHRRRFLDDLLIGRFPRWAGTRSDYDKILRQRNTLLKRASRTLRQG 175

Query: 179 -------DSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLS 227
                  DS+     + ++ +A  G ++   R+ + + LS  +    Q+        +++
Sbjct: 176 YGGGNDSDSALDTLDTWDSHLAAAGAQVMAQRIVLAHVLSPYVKNAYQRLAPESRPAQIT 235

Query: 228 LTGFLDGKFDQ--------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
               +D    +              +   ++     +L   R  D     +  GPHR D+
Sbjct: 236 YRSTVDKALVEAGITPETVANDVAGATPVIEAVLLSELARRRDTDIQRGTSTCGPHRDDV 295

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            +          + S GE     + + LA         G  PIL+LD++ A LD  +R A
Sbjct: 296 EL-LLGTQPARGYASHGESWSFALALRLASFE-WQREQGTDPILILDDVFAELDAARRRA 353

Query: 334 LFRIVTDIGSQIFMTGTDKSVF--DSLNETAKFMRIS 368
           L  +  D   Q  +T         D +N   + + + 
Sbjct: 354 LATVAKDAE-QTLVTAAVGDDLPQDLVNSDIRVLTVE 389


>gi|172039683|ref|YP_001799397.1| recombination protein F [Corynebacterium urealyticum DSM 7109]
 gi|171850987|emb|CAQ03963.1| DNA replication and repair protein RecF [Corynebacterium
           urealyticum DSM 7109]
          Length = 472

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 93/402 (23%), Positives = 162/402 (40%), Gaps = 47/402 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++  L L  D   T+F G NG GKTNI+EA+ +L+     R  + + +
Sbjct: 1   MFVRSLELHDFRSWRELSLQLDPGVTVFSGPNGHGKTNIVEALGYLAHLGSHRVNTDSAL 60

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G   +  S  A     E  A I+I+             IN   +    EL   +R +
Sbjct: 61  VREGQQIARVSATAVNHNRELTAHIAIR-----GHGSNRAHINRTQLATTSELLGIVRTT 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178
              P    +  G   +RR+FLD ++ A  PR      D+++ +R RN LL    +     
Sbjct: 116 LFSPEDLALVRGEPEQRRKFLDEIMVARYPRLAAVKADYDKSLRQRNALLRNNAYALRIA 175

Query: 179 ---------DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLS 227
                      +     +AQ+A LG +I  ARV++ + L+  + +   +         ++
Sbjct: 176 PENDAERLSALATLDVWDAQLAALGGQIMSARVQIAHDLAPHVAQTYARLAPESRPAHMA 235

Query: 228 LTGFLDGKFDQ---------------------SFCALKEEYAKKLFDGRKMDSMSRRTLI 266
            T  +D    Q                     S    +    +     R  +     TLI
Sbjct: 236 YTSTVDADLAQVGVLLGEAELERDPAAELALLSPEVAEATLLQAYARKRTQEVDRGTTLI 295

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
           GPHR DL++    +       S GE     + + L  A  +    G  P+++LD++ A L
Sbjct: 296 GPHRDDLVLMLGTQPAK-GFASHGESWSFALALRLG-AFFMQREDGVEPVVILDDVFAEL 353

Query: 327 DEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRI 367
           D  +R  L  ++T+   Q+ +T    + +   L + A F  +
Sbjct: 354 DSSRRQQLVGLLTEAE-QVLITAAVGEDIPAELRDIATFHDV 394


>gi|229818506|ref|YP_002880032.1| DNA replication and repair protein RecF [Beutenbergia cavernae DSM
           12333]
 gi|259563356|sp|C5BUP6|RECF_BEUC1 RecName: Full=DNA replication and repair protein recF
 gi|229564419|gb|ACQ78270.1| DNA replication and repair protein RecF [Beutenbergia cavernae DSM
           12333]
          Length = 397

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 157/403 (38%), Gaps = 39/403 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +++FR+YA L +  +   T FVG NG GKTN++EAI +L      R +  A +
Sbjct: 1   MYVSDLALTDFRSYADLVIGLEPGITAFVGPNGQGKTNLVEAIGYLGTFSSHRVSGDAAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+        R + +       ++LE    R+ R  +++   +  V E     R   
Sbjct: 61  VRWGAE---RAVVRAKVVRRARPTLVELEIVAGRANRA-RVDRSPVSRVREAAGIARSVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G    RRRFLD ++  + PR      ++ER++R R  LL           
Sbjct: 117 FAPEDLALVKGDPDGRRRFLDDLLVQLSPRLAGVRSEYERVLRQRTALLKSAGPARRRSG 176

Query: 181 -------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
                        +  +A  G ++  ARV ++  L   +    ++ +    +  ++    
Sbjct: 177 DGEPAALRTLDVWDGHLARAGAELVAARVRLVQDLRPHVGATYEQVSAAQSEARISYRAS 236

Query: 234 GKFDQSFCA-----------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
            +  +   A                 ++    + +   R  +     +L+GPHR DL++ 
Sbjct: 237 VEEARPDDAPTEVVESVETELTRADLVEARLLEAMARLRTREIERGVSLVGPHRDDLVLT 296

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLIS----NTTGFAPILLLDEISAHLDEDKRN 332
             D      + S GE     + + LA   L+        G  P+L+LD++ A LD  +R 
Sbjct: 297 LADMPAK-GYASHGESWSYALALRLASYALLRDDGEAGGGGEPVLVLDDVFAELDARRRT 355

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
            L  IV     Q+ +T           E A+   +   + L +
Sbjct: 356 RLASIVASAE-QVLVTAAVAEDVPEELEGARM-DVMGGEVLRV 396


>gi|227538439|ref|ZP_03968488.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241721|gb|EEI91736.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33300]
          Length = 368

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 160/377 (42%), Gaps = 21/377 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  F+NY    L F  +   F G+NG GKTN+L+AI +LS  + +     +  
Sbjct: 1   MWLKQLSVLNFKNYTESALEFLPEVNAFAGENGAGKTNLLDAIHYLSLCKSYFNPIDSQH 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G   +F      E    +  IS  L+    +  +  + +      + +      +  
Sbjct: 61  IKQGMD-WFMVQGSFENDTRIDVISCSLKKNQKKQFKKNKKD---YPRLADHIGQFPLVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
           + P+   I +  S ERR+F+D ++   D  +  ++I + ++M  RN +L +    G  D 
Sbjct: 117 ISPNDSMIITDGSEERRKFMDNVISQTDHHYLDKLITYNKVMLQRNVMLKQARESGQLDL 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                +  Q+ E+G +I   R + +        ++         ++SL            
Sbjct: 177 GLLEVLNLQLVEVGAQIFEKRQQFMKDFLPEFEKHYHFLTESAEQVSLVY--------ES 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +  ++   L    + D    RT  G H+ DL+    +       GS G+QK  L+ + 
Sbjct: 229 PLMTVDFQDLLDRNLERDRALERTSQGIHKDDLLFTIHEGMPLKKFGSQGQQKSFLIALK 288

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS----VF 355
           LA    + +  GF P+LLLD+I   LDE +   L ++V+ D   QIF+T TD      +F
Sbjct: 289 LAQYSFLQSRKGFKPLLLLDDIFDKLDERRTRKLMQMVSEDDFGQIFLTDTDSERVQRIF 348

Query: 356 DSLNETAKFMRISNHQA 372
           + + +  +   I     
Sbjct: 349 EEIAQPIRIFDIKGGTI 365


>gi|163787893|ref|ZP_02182339.1| DNA replication and repair protein RecF, ABC family ATPase
           [Flavobacteriales bacterium ALC-1]
 gi|159876213|gb|EDP70271.1| DNA replication and repair protein RecF, ABC family ATPase
           [Flavobacteriales bacterium ALC-1]
          Length = 359

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 84/372 (22%), Positives = 154/372 (41%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  ++N+ S    FDA+   FVG NGVGKTN L+AI  L+ G+ +        
Sbjct: 1   MNLNTLSLVNYKNFESQVFDFDAKINCFVGANGVGKTNALDAIYHLAFGKSYFNPIALQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  FF         E +  I + L+       + ++ N        E    + +  
Sbjct: 61  INHNAE-FFVVDGNFTKNERVEKIIVSLKRG---QKKIIKRNGKAYEKFSEHIGFIPLVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   +    S  RR+F+D ++   D  +   +I + +++  RN LL        F+ 
Sbjct: 117 ISPADRDLIIEGSDTRRKFIDSVISQSDKTYLIELISYNKVLSQRNALLKYFALNNTFNR 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              +    Q+   G +I   R   +     +  E  +  +     + L    D       
Sbjct: 177 DTLTIYNEQLHTYGTEIFKKRDAFLKIFIPIFKERYEAISQSKESIDLNYKSD------- 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              + +    L +    D   + T +G H+ DL+       I    GS G+QK  L+ + 
Sbjct: 230 -LFEGKLEDLLNNNINKDKTLQYTSVGTHKDDLMFLIDSFPIK-KFGSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGTD----KSVF 355
           LA    I   +G +PILLLD+I   LDE++   +  +V D    QIF++ T     ++V 
Sbjct: 288 LAQFDFIKQQSGVSPILLLDDIFDKLDENRVAQIISLVDDEHFGQIFISDTHAERTENVI 347

Query: 356 DSLNETAKFMRI 367
             ++++ K  ++
Sbjct: 348 KQIHQSYKIFKL 359


>gi|90415376|ref|ZP_01223310.1| recombination protein F [marine gamma proteobacterium HTCC2207]
 gi|90332699|gb|EAS47869.1| recombination protein F [marine gamma proteobacterium HTCC2207]
          Length = 370

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 88/370 (23%), Positives = 160/370 (43%), Gaps = 13/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I + RN  +++L    Q  I  G NG GKT++LE+I  L  GR FR      V
Sbjct: 1   MFLSKLDIFQVRNLQAVQLSCHPQANIIFGANGSGKTSLLESIYLLGRGRSFRHRDLRVV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +     + AR+      +   + +  R  +     +I+   ++   +L   L +  
Sbjct: 61  VNSNAAELIVS-ARLNRDVSGSSHQLGI-KRTSKGQFEARIDGQALQSAVQLVSELPLQL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +      +  G  ++RR+FLD  VF ++  +      F++ ++ RN+LL  G       S
Sbjct: 119 IDAHSFMLLEGGPLQRRQFLDWGVFHVEHTYTEVWRRFQKTLKQRNQLLRHGRMGEDMLS 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +  A++  L  +I   R   ++ LS  I   +   +    ++SL  +      +S   + 
Sbjct: 179 TWTAELIPLCEQITEFRQAYLSQLSKQIQIALSAFDGLG-EISLEYYCGWDDSRSLQDVY 237

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                     +  D  ++ T  G HR+D+ +   D      H S G+ K+++  + LA A
Sbjct: 238 -------VQDQARDIATKTTNHGAHRADIRIKV-DGQPAADHLSRGQIKLLVYALKLAQA 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA-- 362
                  G + + LLD++ A LD   R  +   + D+G Q F+TG DK  F+ L E    
Sbjct: 290 GHYREKLGESCLFLLDDLPAELDYQHRGQVIAYLNDLGCQYFITGVDKQDFECLLEKMPH 349

Query: 363 KFMRISNHQA 372
           K   + + +A
Sbjct: 350 KMFHMEHGEA 359


>gi|260912286|ref|ZP_05918837.1| recombination protein F [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633587|gb|EEX51726.1| recombination protein F [Prevotella sp. oral taxon 472 str. F0295]
          Length = 371

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 149/375 (39%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++I  ++N  ++ L    +   F+G NG GKTN L+A+ +LS  R       + +
Sbjct: 1   MILNSISIINYKNLRAVNLQLSPKTNCFIGHNGSGKTNFLDALYYLSFCRSAYNPIDSQL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F      +  +    ++   ++    +  +    N    + + +    + +  
Sbjct: 61  ITHEQDFFVIEGDYLSEVGDTENVYCGMKRGAKKQFKR---NKKTYKRLSQHIGLIPLVL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P+   +  G S ERRR +D ++   D  +   +    + ++ RN LL  E   D +  
Sbjct: 118 VSPADAALIDGGSEERRRLMDMVIAQYDTTYIEALTRCNKALQQRNALLRMEAEPDLALL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E +MA  G  + + R   +     +     ++ +    ++SL      +        
Sbjct: 178 ELWEEEMAAQGEVVYVKRAAFVEEFIPVFQNIHERISGGSEQVSLRYISHCQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + +  + +   R  D     +L G HR DL +      +    GS G+ K   + + LA 
Sbjct: 230 RGDLLEVIRKDRHKDRAVGYSLHGVHRDDLEMLIDGYQLKRE-GSQGQSKTYALAMKLAQ 288

Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361
              +    +   P+LLLD+I   LD  +   +  +V+ D   QIF+T T++   D + ++
Sbjct: 289 FDFLKRTASKTTPLLLLDDIFDKLDSQRVERIVELVSGDSYGQIFITDTNREHLDRILQS 348

Query: 362 A----KFMRISNHQA 372
                K   + N + 
Sbjct: 349 GTTEYKLFYVENGEI 363


>gi|157827903|ref|YP_001494145.1| recombination protein F [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165932591|ref|YP_001649380.1| recombination protein F [Rickettsia rickettsii str. Iowa]
 gi|166221859|sp|A8GQG2|RECF_RICRS RecName: Full=DNA replication and repair protein recF
 gi|189039635|sp|B0BVU8|RECF_RICRO RecName: Full=DNA replication and repair protein recF
 gi|157800384|gb|ABV75637.1| recombination protein F [Rickettsia rickettsii str. 'Sheila Smith']
 gi|165907678|gb|ABY71974.1| DNA replication and repair protein [Rickettsia rickettsii str.
           Iowa]
          Length = 360

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 189/361 (52%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  A+V +
Sbjct: 6   LHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCK 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S       A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL 
Sbjct: 66  T-SEDHCLVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P M+ IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   I
Sbjct: 122 PHMEGIFTSGSNDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKII 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA++   I   R++ +  +   I +   +  FP   LS+ G ++ K       +   
Sbjct: 182 EEKMADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKENIVSF 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
              +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
               T  APILLLDE+  HLD+ +R  L   +T +  Q+++T T+    ++    A+ ++
Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFANKAQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|34581007|ref|ZP_00142487.1| RecF protein [Rickettsia sibirica 246]
 gi|28262392|gb|EAA25896.1| RecF protein [Rickettsia sibirica 246]
          Length = 360

 Score =  276 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 189/361 (52%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  A+V +
Sbjct: 6   LHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCK 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S       A ++   GLA+ + + +   +R  R  + N+  I   +ELNK   + WL 
Sbjct: 66  T-SEDHCLVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELNKFTSMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P M+ IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   I
Sbjct: 122 PHMEGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKII 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA++   I   R++ +  +   I +   +  FP   LS+ G ++ K       +   
Sbjct: 182 EEKMADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKKNIVSF 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
              +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
               T  APILLLDE+  HLD+ +R  L   +T +  Q+++T T+    ++    A+ ++
Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFATKAQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|288928367|ref|ZP_06422214.1| RecF protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331201|gb|EFC69785.1| RecF protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 371

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 147/375 (39%), Gaps = 19/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++I  ++N  ++ L    +   F+G NG GKTN L+A+ +LS  R       + +
Sbjct: 1   MILNSISIINYKNLRAVNLQLSPKTNCFIGHNGSGKTNFLDALYYLSFCRSAYNPIDSQL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F      +       ++   ++    +  +    N    + + +    + +  
Sbjct: 61  ITHEQDFFVLEGDYISEGGDAENVYCGMKRGSKKQFKR---NKKAYKRLSQHIGLIPLVL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P+   +  G S ERRR +D ++   D  +   +    + ++ RN LL  E   D +  
Sbjct: 118 VSPADAALIDGGSEERRRLMDMVIAQYDTTYIEALTRCNKALQQRNALLRMEAEPDLALL 177

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              E +MA  G  +   R   +     +     ++ +    ++SL     G+        
Sbjct: 178 ELWEEEMAAQGKVVYAKRAAFVEEFIPVFQSIHERISGGSERVSLRYISHGQ-------- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + +    +   R  D     +L G HR DL +      +    GS G+ K   + + LA 
Sbjct: 230 RGDLLDVIRKDRHKDRAVGYSLHGVHRDDLEMLIDGYQLKRE-GSQGQSKTYALAMKLAQ 288

Query: 304 ARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNET 361
              +    +   P+LLLD+I   LD  +   +  +V+ D   QIF+T T++   D + ++
Sbjct: 289 FDFLKRTASKTTPLLLLDDIFDKLDSQRVERIVELVSGDSYGQIFITDTNREHLDRILQS 348

Query: 362 A----KFMRISNHQA 372
                K   + N + 
Sbjct: 349 GTTDYKLFYVENGEI 363


>gi|268610500|ref|ZP_06144227.1| recombination protein F [Ruminococcus flavefaciens FD-1]
          Length = 382

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 162/377 (42%), Gaps = 16/377 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + + +  I  F+N   +    D ++ I VG N  GKTN+LEA+  LS  + FR +   D 
Sbjct: 1   MIVTYAEIDGFKNLKGVSFAPDPKYNIIVGANAQGKTNLLEAMWILSGCKSFRGSKEKDY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             +      S+  +V+       I+ ++  +   S + + +N V  R    L    +   
Sbjct: 61  ICLDGQR-MSSAVKVQDSVREQKITFEM-AKGGNSPKLIHLNGVKQRGTRALFDVFKCIA 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
            +P    I  G   +RR F+D     ++P     +     +M  RN LL E       + 
Sbjct: 119 FIPDDTDIIKGSPEKRRSFIDMAASQLNPMFVMHLNKNNAIMNQRNALLKEISQRNASAD 178

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG----FLDGKFD 237
                + Q ++ G  I+  R E ++ ++ +        +    +LSL      +    F+
Sbjct: 179 VLEIWDRQASKEGAVISWMRNEYVSKINEICGRLYNTISGGAEELSLEYRSNVYKPEDFE 238

Query: 238 QSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           +      EE Y ++L +  + D  +  T  G +R ++ +   +       GS G+ K   
Sbjct: 239 KPIGEEAEELYYRRLRETSEYDIRTGSTHSGVNRDEISIKI-NGVSARDFGSQGQIKSAA 297

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + + LA A +    +  AP++ LD++   LDE+++  +F I+ D+  Q+F+T  ++S   
Sbjct: 298 LVMKLAQAEIYMKKSKDAPVVFLDDVMGELDENRQRFVFDIIRDM--QVFVTTPNESAL- 354

Query: 357 SLNE-TAKFMRISNHQA 372
            L E   K +RIS  + 
Sbjct: 355 -LPEIKGKILRISGGRI 370


>gi|109896335|ref|YP_659590.1| DNA replication and repair protein RecF [Pseudoalteromonas
           atlantica T6c]
 gi|123361468|sp|Q15ZZ5|RECF_PSEA6 RecName: Full=DNA replication and repair protein recF
 gi|109698616|gb|ABG38536.1| DNA replication and repair protein RecF [Pseudoalteromonas
           atlantica T6c]
          Length = 363

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 152/373 (40%), Gaps = 19/373 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + I   RN   +           +G NG GK++ILEAI +L  GR FR + + +V
Sbjct: 1   MKLDSVQIRNLRNLQHVTFKPSHGVNFILGINGSGKSSILEAIHYLGFGRSFRTSKHKNV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    SF       E +E      + L    + +V  + IN +    V +L   L +  
Sbjct: 61  IQNEQESF---TVFCECLEDSTTQRLGLSRSINDTV-SVSINGIKGNKVSDLVSLLPVQI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    I  G    RR+++D  +F ++         + RL++  N L  +   GY +  
Sbjct: 117 FTPQSSDILLGAPKLRRKYIDWCLFHVEHSFLTCSNAYSRLLKHNNALCRKQQVGYANPQ 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                   +A+ G ++   R  M+  L  LI   +  +  P   + ++ +   +      
Sbjct: 177 RV-YWTDLLAQYGSELTEFRNAMMTRLIPLITSNLA-QFLPEFCVEISYYRGWEKGL--- 231

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
               E  + L      D  +    +GPH++D+      K       S G+ ++++  + L
Sbjct: 232 ----ELNEALTKSADRDYKNGYISVGPHKADVRFKISGKPAQEVL-SRGQLRMLVAALQL 286

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-- 359
           A  + + + T    I LLD++ A LD  KR      + +  +Q+F+T  ++   + ++  
Sbjct: 287 ATTQCLMSYTQKTCIFLLDDVGAELDAAKREVFIDRLLESNTQLFVTAIEEHQLEFIDKY 346

Query: 360 ETAKFMRISNHQA 372
           +  K   + + Q 
Sbjct: 347 QNKKMFHVEHGQV 359


>gi|157825165|ref|YP_001492885.1| recombination protein F [Rickettsia akari str. Hartford]
 gi|166221858|sp|A8GLV2|RECF_RICAH RecName: Full=DNA replication and repair protein recF
 gi|157799123|gb|ABV74377.1| recombination protein F [Rickettsia akari str. Hartford]
          Length = 360

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 189/361 (52%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A   D+ +
Sbjct: 6   LHSLSLANYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLDDICK 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S  +    A ++   GLA+ S  ++   +R  R  + N+  I   +EL+K   + WL 
Sbjct: 66  A-SEDYCIVKALLQSQLGLAEFSTHIKRNSNR--RITEYNESKI-ANNELSKFTSMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P M+ IF+  S +RR+FLDR+V+   P+H   +  +E  M  RN++L E   D +W   I
Sbjct: 122 PQMEGIFTSGSSDRRKFLDRIVYNFYPKHAELVSKYEYYMHERNKILAEDIRDDNWLKII 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA++   I   R++ +  +   I E   +  FP   LS+ G ++ +       L   
Sbjct: 182 EGKMADMSSHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQRILDGEENLVNF 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
              +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +   T  APILLLDE+  HLD+ +R  L    T +  Q+++T T+    ++    A+ ++
Sbjct: 300 VIKLTKIAPILLLDEVFVHLDDTRRQYLIEFFTTLSMQLWVTDTNLEGIENFASKAQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|159027176|emb|CAO86808.1| recF [Microcystis aeruginosa PCC 7806]
          Length = 375

 Score =  276 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 177/380 (46%), Gaps = 17/380 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNYA   L F+++ TI +G+N  GK+N+LEAI  L+  +  R +   D+
Sbjct: 1   MYLEHLHLHSFRNYAEQLLKFESKKTILLGNNAQGKSNLLEAIELLATLKSHRVSKDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             + S S    FARV  + G +++S+ L +      R +  +   +R   +    +    
Sbjct: 61  V-LESDSEARIFARVNRLYGASELSLILRSSGR---RTVIRDRQPLRRHLDFLGVINAVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
                  +  G    RR +LD ++  ++P +   +  + +++R RN LL E         
Sbjct: 117 FSSLDLDLVRGGPEARRDWLDTLLIQLEPLYVHILQQYNQVLRQRNALLKEIRKQELEGK 176

Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
            Y D S     + Q+AE G ++   R  ++  L  L  ++ +  +     L L    +  
Sbjct: 177 VYADLSQLKLWDLQLAETGSRVTRRRARVLQRLIPLAQKWHESISGKTEYLELQYIPNVP 236

Query: 236 F-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           + +     ++  +  K+   R  +     +++GPHR ++     ++    ++GS G+Q+ 
Sbjct: 237 WVEDDVNGVQTAFLDKIETRRLAEKQLGTSVVGPHRDEVDF-LINQNPAKSYGSQGQQRT 295

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           +++ + LA  +L+    G  P+LLLD++ A LD +++N L   + D   Q  +T T  S 
Sbjct: 296 LVLALKLAELQLLEQIIGEPPLLLLDDVLAELDIERQNQLLDAIED-RFQTLITTTHLSS 354

Query: 355 FDS-LNETAKFMRISNHQAL 373
           F+S   ++++   +      
Sbjct: 355 FESRWLQSSQIFSVKKGHIF 374


>gi|320527131|ref|ZP_08028318.1| putative recombination protein F [Solobacterium moorei F0204]
 gi|320132459|gb|EFW25002.1| putative recombination protein F [Solobacterium moorei F0204]
          Length = 363

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 162/373 (43%), Gaps = 16/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + +  FRNY +  + F+    +  G N  GKTN+LE++ +LS  R  R      +
Sbjct: 1   MYIKNIQLRNFRNYENAYIEFNPSINLITGANAQGKTNLLESLVYLSLTRSHRIVDDKKL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R            V+  E   ++ I        + + L I+   ++   E    L +  
Sbjct: 61  IRNDEMFAGIDCKFVDTDEKDIEVIIH------PNGKTLMIHKRPLKKSSEFIGLLNVVL 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   RIF+    ERRR +++ +  +  ++   +  F+  ++ RN LL     D ++  
Sbjct: 115 FSPDDLRIFNDQPKERRRVMNQEITKVSTKYLLSLNQFQMYLKDRNALLKSDKIDFNYLD 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            ++ QM+++   I   R + I  + S+I +  Q+ +   IKL +       F +    ++
Sbjct: 175 ILDEQMSKVEAHIIRERRKFIEVIQSVISKIYQELSGSQIKLEIAY---KTFVEDTEEIE 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+  +   + R+ D     T +G H  DLI    D+ + I   S G++++V++   LA  
Sbjct: 232 EKILEIHRESRQKDMEYHITKVGIHLDDLIFKMDDQNL-IYFASQGQKRMVMLSFKLALL 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             I   T   PILLLD++ + LD  ++  L ++V     Q  +T T+        + A  
Sbjct: 291 NYIKLMTKKQPILLLDDVLSELDYSRQKKLLQMVQR-DFQCIITTTE---IPDFLKHADM 346

Query: 365 --MRISNHQALCI 375
              RI   +   +
Sbjct: 347 TEFRIEGGKIFPL 359


>gi|169335586|ref|ZP_02862779.1| hypothetical protein ANASTE_02001 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258324|gb|EDS72290.1| hypothetical protein ANASTE_02001 [Anaerofustis stercorihominis DSM
           17244]
          Length = 366

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 161/369 (43%), Gaps = 12/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + I+ FRN   +   F+ ++ IF G N  GKTN LEA+S    G   R  + ++ 
Sbjct: 1   MYIENIEITNFRNIEKINTSFNKKYNIFYGKNAQGKTNFLEALSLTLNGMSHREKNTSNF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G    FS  +     E   D  IK   +D    R  +IN   I+   EL +   +  
Sbjct: 61  IKNGED--FSLISAKVIKEDDIDTFIKCVIKDK---RKYEINSSPIKSRTELLREYNLVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSS 181
             P   +I  G   +RR+FL+  +  I P +   +  + + ++ RN +L    +    SS
Sbjct: 116 FTPEDLKIIKGYPADRRKFLNESISHIFPSYHSALRKYNKALKQRNAILRDYSKRNIASS 175

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                +  +  +G  I   R+ ++  +  +  E  ++ +              +  +   
Sbjct: 176 LLEVYDETLYTIGSDIIKIRINVLKKIEKITNELNKEVSKDEEVRFFYSSNVLENAKDLK 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +K  Y K L + R  D M   T IG H  D+ +   D   T    S G+Q+ + + + L
Sbjct: 236 DIKSLYKKALKNSRNDDLMKGSTTIGVHHDDINIFLNDLD-TKKFASQGQQRSISLCMKL 294

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           +  +L+ +     PI+LLD++ + LD+ ++  +  ++ D  +Q F+T  + S  + +++ 
Sbjct: 295 SLIKLLHDKFDDYPIVLLDDVMSDLDKFRQKQILNLIKD--TQSFITCVNYSFLEDIDD- 351

Query: 362 AKFMRISNH 370
            K  +I   
Sbjct: 352 YKIYKIEKG 360


>gi|148271182|ref|YP_001220743.1| recombination protein F [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|166220703|sp|A5CLT6|RECF_CLAM3 RecName: Full=DNA replication and repair protein recF
 gi|147829112|emb|CAN00009.1| DNA replication and repair protein RecF [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 404

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 161/397 (40%), Gaps = 38/397 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++ +FRNY    +      T+FVG NG GKTN++EA+ FLS     R ++   +
Sbjct: 1   MIVRHLSLGDFRNYTRADVALLPGATLFVGSNGQGKTNLVEALGFLSTLGSHRVSTDQAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123
            R G+ S     A +  +   A   +++E + +RS     Q+N    +   EL ++    
Sbjct: 61  IRQGAES-----AVIRALLQHAGRELRVEVQINRSAANRAQVNSTPTK-PRELPRYFSSV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178
              P    +  G    RRR LD+++    PR    + D++R ++ RN LL          
Sbjct: 115 LFAPEDLALVRGDPSGRRRLLDQLLVLRTPRLAGVLSDYDRALKQRNTLLKSARARGMKA 174

Query: 179 -DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV----QKENFPHIKLSLTGFLD 233
                    + ++  +G +I  AR  ++ AL   +          ++ P  +  L+   D
Sbjct: 175 DQLGTLDIWDERLVAIGSQIIAARGALVEALQPELARAYLAVAGSDHGPSARPELSILAD 234

Query: 234 GKFDQSFC---------------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
              +                    +   +   +   R  +     TL+GPHR D++    
Sbjct: 235 DPGEDDIADETGARDGGRFTRSDDVVPVFTAAIARMRPRELERGLTLVGPHRDDVLFRLN 294

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRI 337
                  + S GE     + + LA A L+   +    P+L+LD++ A LD+ +R  L   
Sbjct: 295 GLPAK-GYASHGESWSFALALKLASAELLRRDSQTGDPVLILDDVFAELDQARRGRLAEA 353

Query: 338 VTDIGSQIFMTGTD-KSVFDSLNETAKFMRISNHQAL 373
           VT    Q+ +T    + V   L   A  + I   + +
Sbjct: 354 VTGFE-QVLITAAVFEDVPAHLAANA--VHIRAGEIV 387


>gi|238650345|ref|YP_002916197.1| recombination protein F [Rickettsia peacockii str. Rustic]
 gi|259563671|sp|C4K0P8|RECF_RICPU RecName: Full=DNA replication and repair protein recF
 gi|238624443|gb|ACR47149.1| recombination protein F [Rickettsia peacockii str. Rustic]
          Length = 360

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 189/361 (52%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  A+V +
Sbjct: 6   LHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCK 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S       A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL 
Sbjct: 66  T-SEDHCLVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P M+ IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   I
Sbjct: 122 PHMEGIFTSGSNDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKII 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA++   I   R++ +  +   I +   +  FP   LS+ G ++ K       +   
Sbjct: 182 EEKMADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKENIVSF 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
              +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
               T  APILLLDE+  HLD+ +R  L   +T +  Q+++T T+    ++    A+ ++
Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFATKAQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|257067226|ref|YP_003153481.1| DNA replication and repair protein RecF [Brachybacterium faecium
           DSM 4810]
 gi|256558044|gb|ACU83891.1| DNA replication and repair protein RecF [Brachybacterium faecium
           DSM 4810]
          Length = 414

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 94/416 (22%), Positives = 166/416 (39%), Gaps = 52/416 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++++FR+Y+ L L      T+ VG NG GKTN++EA+ +L+     R    A +
Sbjct: 1   MQLTSLDLTDFRSYSRLTLPVRPGITVLVGQNGQGKTNVVEAVWYLATLSSHRVPHDAAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +     + V        + + LE    +S R  ++    +  + +L   +R   
Sbjct: 61  VHRGESTAIVRASFVRAG---RPLQVDLEITPGKSNRA-RLQGQNVPRLRDLLGEVRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +       RRRFLD ++F I PR      D++R+++ R  LL +         
Sbjct: 117 FAPEDLGLIKADPEGRRRFLDELLFEIAPRFASVKADYDRVLKQRGNLLKQMRSMRRGSS 176

Query: 179 ------------DSSWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIK 225
                        SS     + Q+A  G ++  AR+ ++N LS  +   Y++       +
Sbjct: 177 GRSVGGLDPAETASSTLEVWDQQLARYGAELLRARLHLVNRLSPHLGYSYLRVSTDEGAE 236

Query: 226 LSLTGFLDGKFD------------------------QSFCALKEEYAKKLFDGRKMDSMS 261
            +L    D + D                         +   + +   + L  G   +   
Sbjct: 237 QALDLPPDQRGDVDSPAEIRYRSAVLDQLGAPAGSLPATREIHDGMLEMLAAGHDEEIDR 296

Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF----APIL 317
             TL GPHR D+ +   D      + S GE   + + + LA   L+    G      PIL
Sbjct: 297 GATLTGPHRDDMEIRLHDFPAK-GYASHGESWSLALALRLASYDLLRLEEGDLGDGEPIL 355

Query: 318 LLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           +LD++ + LD  +R  L RIVT     +  T  D  + DSL      + ++   A+
Sbjct: 356 ILDDVFSELDTRRRERLGRIVTTASQVLITTANDGDIPDSLEGEIHVVDVTLGAAV 411


>gi|254483301|ref|ZP_05096532.1| RecF/RecN/SMC N terminal domain, putative [marine gamma
           proteobacterium HTCC2148]
 gi|214036396|gb|EEB77072.1| RecF/RecN/SMC N terminal domain, putative [marine gamma
           proteobacterium HTCC2148]
          Length = 373

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 83/380 (21%), Positives = 168/380 (44%), Gaps = 20/380 (5%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M++   +  L I+  RN   +RL    +  +F G NG GKT++LEAI  L   R FR + 
Sbjct: 1   MSSDSSLSRLQINHVRNLLGVRLEGIQRVNVFFGHNGSGKTSVLEAIHLLGMARSFRGSI 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
              +   G     + F  +E        ++ ++      V+ ++I    +R V EL ++L
Sbjct: 61  -KSLVTHGQD-HCTVFGALE----PRSTTLGVQRGVTGEVK-IKIAGSPVRTVAELVEYL 113

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +  +      + +G    RR++LD  VF ++ R   +   F+R ++ RN+LL      +
Sbjct: 114 PVQVINADSFNLLTGSPGARRQYLDWGVFHVEHRFFDQWQRFQRGIKQRNKLLRRVKMPT 173

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              +    ++A+ G  ++  R    N L+   +E +       +  SLTG L+ ++ + +
Sbjct: 174 EELAVWTRELAQSGEVLSGYRESYFNRLTPRFIEIMA-----QLAPSLTG-LELRYRKGW 227

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E Y + L +    D     T +GP R D+ V   +  +     S G+QK+V+ G+ 
Sbjct: 228 DKQLE-YQQALENSTMTDIEQGYTHVGPQRGDVRV-LTEGHVAADTLSRGQQKLVVCGLK 285

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-- 358
           LA  +L++         L+D++ + LD    + +  ++  + +Q+F+T   ++   ++  
Sbjct: 286 LAQGQLMAEMGRGNCTYLVDDLPSELDLQHSSLVCGLLAGMNAQVFITCVHQNDIQAVWP 345

Query: 359 ---NETAKFMRISNHQALCI 375
               +      + +     +
Sbjct: 346 EEKQQELAMFHVEHGSVTPL 365


>gi|152963976|ref|YP_001359760.1| DNA replication and repair protein RecF [Kineococcus radiotolerans
           SRS30216]
 gi|189039627|sp|A6W3V7|RECF_KINRD RecName: Full=DNA replication and repair protein recF
 gi|151358493|gb|ABS01496.1| DNA replication and repair protein RecF [Kineococcus radiotolerans
           SRS30216]
          Length = 391

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 96/394 (24%), Positives = 167/394 (42%), Gaps = 31/394 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ ++R+Y +L L      T FVG NG GKTN++EAI +++     R +  A +
Sbjct: 1   MHVAHLSLVDYRSYPTLELDLRPGTTTFVGLNGQGKTNLVEAIGYVATLGSHRVSGDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+        R +   G     ++LE    ++ R  ++N   +R   ++   LR   
Sbjct: 61  VRQGAE---RAVVRAQLERGGRRALVELEITPGKANRA-RLNGNPVRRTRDVLGVLRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY 177
             P    +  G   ERRR+LD ++    PR      D++R++R R  LL         G 
Sbjct: 117 FAPEDLALVKGDPGERRRYLDELLVTRWPRIAGVRADYDRILRQRTALLKSAGSAMRSGR 176

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD---- 233
            D+      +  +A  G ++  AR+ ++  L S      +  +     L L         
Sbjct: 177 ADTHTLDVWDEHLATTGAELLSARLALLADLRSPTDSAYRAVSGGQGDLELGYRSSLPLL 236

Query: 234 --------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
                   G    +  AL+E     + + RK +      L+GPHR DL++          
Sbjct: 237 AEGVATTPGGEAPTRDALREALLASMLEQRKSELDRGVCLVGPHRDDLVLTLGGMPAK-G 295

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFA----PILLLDEISAHLDEDKRNALFRIVTDI 341
           + S GE   V +G+ LA  RL+           P+L+LD++ A LD  +R  L  +V D 
Sbjct: 296 YASHGESWSVALGLRLASYRLLLADDEVDDPGGPVLVLDDVFAELDAGRRERLSEVVADA 355

Query: 342 GSQIFMT-GTDKSVFDSL-NETAKFMRISNHQAL 373
             Q+ +T    + V  +L  E    + +++  A+
Sbjct: 356 E-QVLVTAAVPEDVPAALRGEHTDRVHVTSGAAV 388


>gi|149280279|ref|ZP_01886401.1| DNA replication and repair protein RecF, ABC family ATPase
           [Pedobacter sp. BAL39]
 gi|149228968|gb|EDM34365.1| DNA replication and repair protein RecF, ABC family ATPase
           [Pedobacter sp. BAL39]
          Length = 367

 Score =  275 bits (703), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 151/379 (39%), Gaps = 26/379 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  F+NY+   + F      FVG+NG GKTN+L+AI +L   +G+     +  
Sbjct: 1   MWLKNITLLNFKNYSDANISFSKTVNAFVGNNGAGKTNLLDAIHYLCLCKGYFNPIDSQQ 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +   F      +  E    I+  ++    +  +    N      +        +  
Sbjct: 61  IKT-AEDLFLIQGDFDRKEKNEKITCGVKRNQKKQFKR---NKKEYDKLASHIGLFPLVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
           + P    +    S ERR+F+D ++   D  +   +I + R ++ RN LL +      +D 
Sbjct: 117 ISPYDTNLIMEGSEERRKFMDNVISQTDGSYLDELIFYNRHLQNRNALLKQMSITRSYDP 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQ 238
           S       Q+   G KI   R + +     L  +Y +   E+   + L     L      
Sbjct: 177 SLLEIYNDQLVASGNKIYAKRQQFMTEFIPLFDQYYRFLTEDKEEVNLQYQSQLADV--- 233

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                   + + L    + D +  RT  G H+ +L+       +    GS G+QK  L+ 
Sbjct: 234 -------SFEQLLLQSIEKDKVLERTTTGIHKDELVFTIRTTPLK-KFGSQGQQKSFLIA 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS---- 353
           + LA    +    GF P+LLLD+I   LDE +   L  +V+ D   QIF+T T +     
Sbjct: 286 LKLAQYAYLQRYKGFKPLLLLDDIFDKLDEFRMQKLMEMVSHDDFGQIFITDTGRERVMA 345

Query: 354 VFDSLNETAKFMRISNHQA 372
           VF  +        + N   
Sbjct: 346 VFQKIQVPITLFEVVNGSI 364


>gi|54021967|ref|YP_116209.1| recombination protein F [Nocardia farcinica IFM 10152]
 gi|81680365|sp|Q5Z3Z6|RECF_NOCFA RecName: Full=DNA replication and repair protein recF
 gi|54013475|dbj|BAD54845.1| putative recombination and repair protein [Nocardia farcinica IFM
           10152]
          Length = 388

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 96/375 (25%), Positives = 162/375 (43%), Gaps = 25/375 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++ +FR++  + L      T+F+G NG GKTN+LEA+ +L+     R ++ A +
Sbjct: 1   MFVRALSLRDFRSWEHVELELSTGRTVFLGANGNGKTNLLEAVGYLATLGSHRVSADAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+         V       ++ I +E     + R  QIN   +R   E+   L+   
Sbjct: 61  IRSGAQRARVGANVVNAG---RELRIDVELNQGSANRA-QINRSPVRRTREILGILQTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT------EGYF 178
             P    +  G   ERRRFLD +  A  PR      D++R++R R+ LL           
Sbjct: 117 FAPEDLALVRGDPGERRRFLDELCTARLPRLAGVRADYDRVLRQRSALLKTAGRHARSTA 176

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGK 235
           D S     +  +A     +   R+ +++ L   + E  +    E+ P      + +L G+
Sbjct: 177 DLSTLDVWDGHLAGHAAVLVAQRLRLVHDLFPYLAEAYRSLAPESRPAAIGYRSAYLPGE 236

Query: 236 F--------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           F        D    AL+E   ++L   R+ +      L+GPHR +L +   D        
Sbjct: 237 FLDPARAPRDDDAAALEEIILRELAAARRKELERGVCLVGPHRDELELMLGDTPAK-GFA 295

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE     + + LA   L+  +T   P+LLLD++ A LD  +R A    V     Q+ +
Sbjct: 296 SHGESWSFALALRLASFDLL-RSTSAEPVLLLDDVFAELDRRRRTA-LAAVAADAEQVLI 353

Query: 348 T-GTDKSVFDSLNET 361
           T    + V   L+ T
Sbjct: 354 TAAVPEDVPAELSAT 368


>gi|237736250|ref|ZP_04566731.1| DNA replication and repair protein recF [Fusobacterium mortiferum
           ATCC 9817]
 gi|229421598|gb|EEO36645.1| DNA replication and repair protein recF [Fusobacterium mortiferum
           ATCC 9817]
          Length = 365

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 70/371 (18%), Positives = 155/371 (41%), Gaps = 14/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  +N   FRN     + F  +  +F G NG GKT++LEA+ F + G+ FR +   ++
Sbjct: 1   MEILEINYINFRNLIDGSVKFFPKLNLFFGKNGQGKTSLLEAVYFNATGKSFRTSKANEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G       +       G   +++K         +    N+  +   DE    L +  
Sbjct: 61  MKYGVKR-TGVYIVYRDNIGEKTLTVKFNDN----KKEYYYNNKKV-PYDEFYGKLNVVT 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +   +  + + + ++ +L++ RN+ L E     +   
Sbjct: 115 YIPEDIVLITGSPSIRRTFFDGEIAQTNSEYFQDLKNYNKLLKIRNKYLKEERTKDTEYL 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQSFCA 242
             E +  + G K+   R+E +  +S ++    +K  +N   + LS    L      S   
Sbjct: 175 VYEDEFIKYGAKVIEKRLEYVQKISIILNLNYRKLFDNKKELSLSYECHLGNIKKLSLKE 234

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++   +K+      +     +L GP + D +          +  S GE+K ++  + L+
Sbjct: 235 IEKLLREKIKKNFSQEKRYGFSLCGPQKDDFLFILNGHEAK-STASQGEKKSIIFSLKLS 293

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              ++       P+L++D+IS++ D +++ ++   +     Q+ ++ T     DS +   
Sbjct: 294 EIDMVIREKKENPVLIIDDISSYFDSNRKESILNYLEKRNIQVLVSSTGDLGIDSND--- 350

Query: 363 KFMRISNHQAL 373
               +   + +
Sbjct: 351 --FYVEGGEIV 359


>gi|170780467|ref|YP_001708799.1| recombination protein F [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189039619|sp|B0RH73|RECF_CLAMS RecName: Full=DNA replication and repair protein recF
 gi|169155035|emb|CAQ00131.1| DNA replication protein [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 408

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/390 (23%), Positives = 161/390 (41%), Gaps = 36/390 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++ +FRNY    +      T+FVG NG GKTN++EA+ FLS     R ++   +
Sbjct: 1   MIVRHLSLGDFRNYTRADVALLPGATLFVGSNGQGKTNLVEALGFLSTLGSHRVSTDQAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123
            R G+ S     A +  +   A   +++E + +RS     Q+N    +   EL ++    
Sbjct: 61  VRQGAES-----AVIRALLQHAGRELRVEVQINRSAANRAQVNGTATKT-RELPRYFSSV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----- 178
              P    +  G    RRR LD+++    PR    + D++R ++ RN LL          
Sbjct: 115 LFAPEDLALVRGDPSGRRRLLDQLLVLRTPRLAGVLSDYDRALKQRNTLLKSARARGMKA 174

Query: 179 -DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV----QKENFPHIKLSLTGFLD 233
              S     + ++  +G +I  AR  ++ +L   +          ++ P  +  L+   D
Sbjct: 175 DQLSTLDIWDERLVAIGSQIIAARGALVESLQPELARAYLAVAGSDHGPSARPELSILAD 234

Query: 234 GKFDQSF---------------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
              +                    +   +   +   R  +     TL+GPHR D++    
Sbjct: 235 DPGEDDVADETGARDGGRFTRTEDVVPVFTAAIARMRPRELERGLTLVGPHRDDVLFRLN 294

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRI 337
                  + S GE     + I LA A L+   +    P+L+LD++ A LD+ +R  L   
Sbjct: 295 GLPAK-GYASHGESWSFALAIKLASAELLRRDSQTGDPVLILDDVFAELDQARRGRLAEA 353

Query: 338 VTDIGSQIFMTGTD-KSVFDSLNETAKFMR 366
           VT    Q+ +T    + V + L   A  +R
Sbjct: 354 VTGFE-QVLITAAVFEDVPEHLAANAVHIR 382


>gi|296167141|ref|ZP_06849548.1| recombination protein F [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897463|gb|EFG77062.1| recombination protein F [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 385

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/382 (23%), Positives = 158/382 (41%), Gaps = 23/382 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A   L  +   T+FVG NG GKTN++EA+ F +     R  S   +
Sbjct: 1   MYVRHLGLRDFRSWAHADLELEPGRTVFVGSNGFGKTNLVEALWFSATLGSHRVGSDTPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       + ++ LE    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGADRAVVSTIVVNEG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179
             P    +  G   ERRR+LD +     P       D+++++R R  LL          D
Sbjct: 117 FAPEDLALVRGDPAERRRYLDDLATVRRPAVAGVRADYDKVLRQRTALLKSAAGMRHRAD 176

Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234
                     ++++AE G ++  AR++++N L+  + +  Q          ++    L  
Sbjct: 177 RGALDTLDVWDSRLAEHGAELMAARIDLVNQLTPEVEKAYQLLAPASRPASIAYRSSLGA 236

Query: 235 KFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           +          E+        L + R  +      L+GPHR DL +   D+       S 
Sbjct: 237 QLAADGGGHDREFLEAALLAALAERRDAELERGMCLVGPHRDDLELWLGDQPAK-GFASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT- 348
           GE     V + LA   L+    G  P+LLLD++ A LD  +R AL   V +   Q+ +T 
Sbjct: 296 GESWSFAVALRLAAYELL-RADGSEPVLLLDDVFAELDAARRRALA-TVAEAAEQVLVTA 353

Query: 349 GTDKSVFDSLNETAKFMRISNH 370
              + +         ++ + + 
Sbjct: 354 AVVEDIPAGWAARQVYIDLRDG 375


>gi|86133307|ref|ZP_01051889.1| DNA replication and repair protein RecF [Polaribacter sp. MED152]
 gi|85820170|gb|EAQ41317.1| DNA replication and repair protein RecF [Polaribacter sp. MED152]
          Length = 359

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 158/372 (42%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  F+N AS    F  +   FVG+NGVGKTN+L+AI +LS  + +  +     
Sbjct: 1   MYLQQLSLVNFKNIASQSFDFQEKINCFVGNNGVGKTNVLDAIYYLSFTKSYFNSVAVQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    SFF         +    I   L+       + L+ N        +      I  
Sbjct: 61  IKHN-ESFFMIEGNYLLNDRKETIVCSLK---KGQKKILKRNGKTYDRFSDHIGQFPIVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   + +  S  RR+F+D ++   +  + + +I + +++  RN LL        FD+
Sbjct: 117 ISPADRDLVTEGSDLRRKFIDGVISQQNKSYLKDLIGYNKVLTQRNALLKYFAANRTFDA 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              S  + Q+++ G KI   R   +     +  E  +  +     ++L  +     D S 
Sbjct: 177 LNLSVYDEQLSDFGTKIYEVRRHFLEEFIPIFNEKYKVISGDKENVNL-NYKSQLHDFSM 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L       L    + D + + +  G H+ DL  +  D  I    GS G+QK  L+ + 
Sbjct: 236 PDL-------LQKSLEKDKILQYSTSGIHKDDLNFEIGDYPIK-KFGSQGQQKSYLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL- 358
           LA    I       PILLLD+I   LDE++   +  +V  D   QIF+T T     +++ 
Sbjct: 288 LAQFEFIKQQAKITPILLLDDIFDKLDENRVAQIIDLVNNDEFRQIFITDTHAERTENIL 347

Query: 359 ---NETAKFMRI 367
              N+  +  ++
Sbjct: 348 KEGNKQYQIFKL 359


>gi|300769989|ref|ZP_07079868.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762465|gb|EFK59282.1| recombination protein F [Sphingobacterium spiritivorum ATCC 33861]
          Length = 368

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/377 (22%), Positives = 159/377 (42%), Gaps = 21/377 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  F+NY    L F  +   F G+NG GKTN+L+AI +LS  + +     +  
Sbjct: 1   MWLKQLSVLNFKNYTESALEFLPEVNAFAGENGAGKTNLLDAIHYLSLCKSYFNPIDSQH 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G   +F      E       IS  L+    +  +  + +      + +      +  
Sbjct: 61  IKQGMD-WFMVQGSFENDTRTDVISCSLKKNQKKQFKKNKKD---YPRLADHIGQFPLVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
           + P+   I +  S ERR+F+D ++   D  +  ++I + +++  RN +L +    G  D 
Sbjct: 117 ISPNDSMIITDGSEERRKFMDNVISQTDHHYLDKLITYNKVILQRNIMLKQARESGQLDL 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                +  Q+ E+G +I   R + +        ++         ++SL            
Sbjct: 177 GLLEVLNLQLVEVGAQIFEKRQQFMKDFLPEFEKHYHFLTESAEQVSLVY--------ES 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +  ++   L    + D    RT  G H+ DL+    +       GS G+QK  L+ + 
Sbjct: 229 PLMTIDFQDLLDRNLERDRALERTSQGIHKDDLLFTIHEGMPLKKFGSQGQQKSFLIALK 288

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKS----VF 355
           LA    + +  GF P+LLLD+I   LDE +   L ++V+ D   QIF+T TD      +F
Sbjct: 289 LAQYSFLQSRKGFKPLLLLDDIFDKLDERRTRKLMQMVSEDDFGQIFLTDTDSERVQRIF 348

Query: 356 DSLNETAKFMRISNHQA 372
           + + +  +   I     
Sbjct: 349 EEIAQPIRIFDIKGGAI 365


>gi|94495802|ref|ZP_01302381.1| DNA replication and repair protein RecF [Sphingomonas sp. SKA58]
 gi|94424494|gb|EAT09516.1| DNA replication and repair protein RecF [Sphingomonas sp. SKA58]
          Length = 357

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 132/368 (35%), Positives = 199/368 (54%), Gaps = 17/368 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +S+FRN+A   ++ D    +  GDNG GKTNILEA+S L+PGRG R A+   + R
Sbjct: 2   IGRLTLSDFRNHADALILPDHAFVLLTGDNGAGKTNILEAVSMLAPGRGLRGAALGAMAR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 F   A V+G+       +     + R VR       V    + L  HL I+WL 
Sbjct: 62  QEGAGGFGIAAEVDGVV--LGTGVAASAPERRQVRI----GGVGSSANALADHLAITWLT 115

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWCSS 185
           P+MDR+F      RRRFLDR+  A+ P H      ++  MR RNRLL +    D +W S+
Sbjct: 116 PAMDRLFLDSPGGRRRFLDRLTLALHPGHAAHSARYDAAMRARNRLLGDLRTADPAWLSA 175

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +EAQM + G+ ++ AR +++  L+ ++     + + P  +  +        +++    +E
Sbjct: 176 LEAQMDDHGLVLSAARADLVARLNDILAR---QPDAPFARPMI------AIEEAEPQGEE 226

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             A +L   R+ D+ + R+L GPHR DL V +  K    A  STGEQK +L+ I LAHA 
Sbjct: 227 PLAMRLARQRRRDAAAGRSLSGPHRHDLAVTHVAKGQAAALCSTGEQKALLLSILLAHAA 286

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L+++  G  P+LLLDE++AHLD  +R ALF  + + G QI+MTGT+ S+F  L   A  +
Sbjct: 287 LVADERGQPPVLLLDEVAAHLDPLRRAALFDRLAETGGQIWMTGTEPSLFSDLT-AATRL 345

Query: 366 RISNHQAL 373
            ++     
Sbjct: 346 TVTAGHVF 353


>gi|189345561|ref|YP_001942090.1| DNA replication and repair protein RecF [Chlorobium limicola DSM
           245]
 gi|259563358|sp|B3EDN1|RECF_CHLL2 RecName: Full=DNA replication and repair protein recF
 gi|189339708|gb|ACD89111.1| DNA replication and repair protein RecF [Chlorobium limicola DSM
           245]
          Length = 363

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/353 (20%), Positives = 151/353 (42%), Gaps = 10/353 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ + + +FRN+ +L         +  G NG GKT++LE I + +  +GF  A  ++ 
Sbjct: 1   MKIEQIQLVQFRNHKNLSYGPAEGINLLYGPNGSGKTSVLEGIHYCALTKGFVTAYDSEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G   F      +        + +     + +    L +N   +    +    +    
Sbjct: 61  LAFGESFFLINGRFISDALKEDGVKVVYSRDNGKK---LTVNGQDLTSFSQHIGSIPCIT 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL---LTEGYFDSS 181
             P+   + +G  +ERRRFLD  +   D R+ + M+++ R++  RN L   L E      
Sbjct: 118 FSPAEMSVINGSPVERRRFLDNAICQADCRYLQSMLNYRRVLLQRNALLLQLKERVQSIE 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-KLSL-TGFLDGKFDQS 239
             + +  Q++E    I  AR+  ++ +   +   +   +     +++  +  +   +  +
Sbjct: 178 MLNVLTEQLSEYAADIVFARLRFLDEILPGLKAILSSVSVKEEPRITYRSSLVPSVYALT 237

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L   + ++    ++ +     T  GPHR D++       I   + S G+Q+  L+ +
Sbjct: 238 KEELINYFREQYAKKKQDEIARGLTAGGPHRDDIVFFLNQHEIK-KYASQGQQRSFLIAM 296

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            +A     S+     P+ L D++ + LD  +   LF ++   G Q+F+T T+K
Sbjct: 297 KMALYGYFSDKLNEKPVCLFDDLFSELDRSRVEVLFALLASFG-QVFITATEK 348


>gi|269124281|ref|YP_003297651.1| DNA replication and repair protein RecF [Thermomonospora curvata
           DSM 43183]
 gi|268309239|gb|ACY95613.1| DNA replication and repair protein RecF [Thermomonospora curvata
           DSM 43183]
          Length = 379

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 160/384 (41%), Gaps = 25/384 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+YA+  +  +   ++FVG NG GKTN++EAI +++     R A+ A +
Sbjct: 1   MHVAHLSLQDFRSYATAEIALEPGVSVFVGPNGQGKTNLMEAIGYVAAHSSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+P        V          I+LE    RS R  ++N   +    E+   LR   
Sbjct: 61  IRQGAPRAIVRAGVVRDDRKAL---IELEINPGRSNRA-RLNRAPVPRPREILGMLRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G   ERRRFLD ++ A  PR      D++R++R RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARAPRLAGVRADYDRVLRQRNALLKSAAAHRRPPG 176

Query: 181 ----SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDG 234
               +     ++ +A +G ++  AR++++  LS L  +             L+    L  
Sbjct: 177 PEMLATLEVWDSHLARVGAELLAARLKLVADLSPLAAKAYAALAPGGGIASLAYRSSLGE 236

Query: 235 KFDQSFCALKEE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           +  +    +  +       + L + R+ +     +L+GPHR +L++            S 
Sbjct: 237 RLPEDRMPVPRQTLAPLIEEALREVRRQELERGVSLVGPHRDELVLQLGGMP-ARGFASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT- 348
           GE   + +      A  +    G  P+L+LD++ A LD  +R  L  +V     Q+ +T 
Sbjct: 296 GESWSLALA-LRLAAFELLRADGDDPVLILDDVFAELDTGRRRRLAELVAPAE-QVLITA 353

Query: 349 GTDKSVFDSLNETAKFMRISNHQA 372
                V   L   +    + N   
Sbjct: 354 AVPADVPAELRGAS--FTVENGAV 375


>gi|291515283|emb|CBK64493.1| recF protein [Alistipes shahii WAL 8301]
          Length = 415

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/373 (22%), Positives = 156/373 (41%), Gaps = 18/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  F+N +   L         VGDNG GKTN+++A+ +LS  +     +    
Sbjct: 1   MHLKKIALLNFKNISQEELALCPGINCLVGDNGAGKTNVVDAVYYLSMCKSSLPMTDGQS 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+  FF          G  +  +   +R  +  + L+ N      + +    +    
Sbjct: 61  IRHGAD-FFLVEGTYASDAGKRETIVCSFSR--KGGKVLKRNGKEYERLSDHVGLIPAVI 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P+   + S  + ERRR+L+  +  +D  +   ++ +  ++  RNRLL     D +   
Sbjct: 118 VSPADSALISDAADERRRYLNAFISQLDRAYLGSVMRYNAVLAERNRLLKT-RPDETMLQ 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+ E G  I+  R E    L  +   Y    +    ++ L    +           
Sbjct: 177 IYDMQLCEHGKAIHARRQEFAERLQPVTAAYYSILSGDREQVELHYKSELNDRP------ 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             + + L D R+ D ++  T  G HR DL++      +   +GS G+QK  L+ + LA  
Sbjct: 231 --FEEILLDARQKDIVNEFTTAGIHRDDLVLKIGGYPLR-KYGSQGQQKSFLIALKLAQY 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDSLNETA- 362
            +++ T G  PILLLD++   LD  +   L R+V+D    QI +T  + +    + + A 
Sbjct: 288 AVVAQTKGERPILLLDDLFDKLDAGRVEQLIRLVSDNTFGQILITDCNPTRLKRILDKAG 347

Query: 363 ---KFMRISNHQA 372
                  ++    
Sbjct: 348 GDYTLFSVAEGTV 360


>gi|312112798|ref|YP_004010394.1| DNA replication and repair protein RecF [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311217927|gb|ADP69295.1| DNA replication and repair protein RecF [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 400

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 147/388 (37%), Positives = 212/388 (54%), Gaps = 18/388 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           T+RI I  L +++FRNY ++ LV      +  G NG GKTN LEA+S L+ GRG R   +
Sbjct: 4   TDRIAIAKLTLTDFRNYRAVTLVTGLGPVVLAGANGAGKTNCLEAVSLLTAGRGLRSLPF 63

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD-----RSVRCLQINDVVIRVVDEL 116
            ++ R G    ++  A +        I   ++   D     R+ R ++I+  + +    L
Sbjct: 64  PELARSGGSGGWAVAAELGVAGEDMHIGTGIQLPPDGMLTPRAARTVKIDHALAKGSGAL 123

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
            + +R+ WL PSMD +F+G + ERRRFLDR+V ++DP +      FER MR RN+ L E 
Sbjct: 124 VR-IRMLWLTPSMDGLFTGPAAERRRFLDRLVLSLDPGYGAAASAFERAMRQRNKALEE- 181

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLD 233
           +      ++IEAQMA   V + +AR   I ALS  I     ++    FP   L+L G L+
Sbjct: 182 FDSPPMLTAIEAQMAAAAVAMAVARARAIAALSGEIEAERNRDPDSLFPWAALTLNGTLE 241

Query: 234 GK-----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
            +      D     L++ YA+ L  GR  D  + RTL GPHRSDL V +  KA+     S
Sbjct: 242 EQAAALSEDTMRDELRDGYARALAQGRDRDRAAGRTLSGPHRSDLDVAHGPKAMPARMCS 301

Query: 289 TGEQKVVLVGIFLAHARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           TGEQK +LVG+ LA ARLI     G AP++LLDEI+AHLD  +R ALF  +  + +Q++M
Sbjct: 302 TGEQKALLVGLVLAQARLIKRAADGIAPLILLDEIAAHLDIGRREALFSSIVALNAQVWM 361

Query: 348 TGTDKSVFDSLNET--AKFMRISNHQAL 373
           TGTD + F  L      +   +SN   +
Sbjct: 362 TGTDLATFTPLRNATETQLFVVSNGTIM 389


>gi|97180901|sp|Q4UNG8|RECF_RICFE RecName: Full=DNA replication and repair protein recF
          Length = 364

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 185/361 (51%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  AD+ +
Sbjct: 6   LHSLTLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICK 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                     A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL 
Sbjct: 66  ASEDQCL-VKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P M+ IF+  S +RR+FLDR+V+  D +H   +  +E  M  RN++L E   D +W   I
Sbjct: 122 PQMEGIFTSGSSDRRKFLDRIVYNFDSKHAELVSKYEYYMYERNKILAEDIRDDNWLKII 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA++   I   R++ +  +   I E   +  FP   LS+ G ++ K       +   
Sbjct: 182 EEKMADMSSHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQKILDGKENIVNF 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
              +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
               T  APILLLDE+  HLD+ +R  L    T +  Q+++T TD    ++    A+ ++
Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRGYLIEFFTGLNMQLWVTATDLEGIENFANKAQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|229586258|ref|YP_002844759.1| recombination protein F [Rickettsia africae ESF-5]
 gi|259563670|sp|C3PM56|RECF_RICAE RecName: Full=DNA replication and repair protein recF
 gi|228021308|gb|ACP53016.1| DNA replication and repair protein RecF [Rickettsia africae ESF-5]
          Length = 360

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 118/361 (32%), Positives = 188/361 (52%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  A+V +
Sbjct: 6   LHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCK 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S       A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL 
Sbjct: 66  T-SEDHCLVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P M+ IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   I
Sbjct: 122 PHMEGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKII 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA++   I   R++ +  +   I +   +  FP   LS+ G ++ K       +   
Sbjct: 182 EEKMADISNHIANNRLKTLEFMQQAIDDL--ENEFPKADLSIDGIVEQKILNGKKNIVSF 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
              +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
               T  APILLLDE+  HLD+ +R  L   +  +  Q+++T T+    ++    A+ ++
Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFLIGLNMQLWVTTTNLEGIENFATKAQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|166362989|ref|YP_001655262.1| recombination protein F [Microcystis aeruginosa NIES-843]
 gi|189039629|sp|B0JM53|RECF_MICAN RecName: Full=DNA replication and repair protein recF
 gi|166085362|dbj|BAG00070.1| DNA replication and repair protein [Microcystis aeruginosa
           NIES-843]
          Length = 375

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 177/380 (46%), Gaps = 17/380 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNYA   L F+++ TI +G+N  GK+N+LEAI  L+  +  R +   D+
Sbjct: 1   MYLEHLHLHSFRNYAEQVLKFESKKTILLGNNAQGKSNLLEAIELLATLKSHRVSKDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             + S S    FARV  + G +++S+ L +      R +  +   +R   +    +    
Sbjct: 61  V-LESDSEARIFARVNRLYGASELSLILRSSGR---RTVIRDRQPLRRHLDFLGVINAVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
                  +  G    RR +LD ++  ++P +   +  + +++R RN LL E         
Sbjct: 117 FSSLDLDLVRGGPEARRDWLDTLLIQLEPLYVHILQQYNQVLRQRNALLKEIRKQELEGK 176

Query: 177 -YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
            Y D S     + Q+AE G ++   R  ++  L  L  ++ +  +     L L    +  
Sbjct: 177 VYGDLSQLKLWDLQLAETGSRVTRRRARVLQRLIPLAQKWHESISGKTELLELQYIPNVP 236

Query: 236 F-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           + +     ++  +  K+   R  +     +++GPHR ++     ++    ++GS G+Q+ 
Sbjct: 237 WVEDDVNGVQRAFLDKIETRRLAEKQLGTSVVGPHRDEVDF-LINQNPAKSYGSQGQQRT 295

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           +++ + LA  +L+    G  P+LLLD++ A LD +++N L   + D   Q  +T T  S 
Sbjct: 296 LVLALKLAELQLLEQIIGEPPLLLLDDVLAELDIERQNQLLDAIED-RFQTLITTTHLSS 354

Query: 355 FDS-LNETAKFMRISNHQAL 373
           F+S   ++++   +      
Sbjct: 355 FESRWLQSSQVFSVKKGHIF 374


>gi|312137518|ref|YP_004004854.1| DNA replication and repair protein recf [Rhodococcus equi 103S]
 gi|311886857|emb|CBH46165.1| DNA replication and repair protein RecF [Rhodococcus equi 103S]
          Length = 408

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 165/394 (41%), Gaps = 37/394 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++  ++ +FR++ ++ +  +   T+FVG NG GKTN+LEA+ +LS     R +S A +
Sbjct: 1   MFVRKFSLRDFRSWDAVTVDLEPGCTVFVGRNGHGKTNLLEALGYLSTLSSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+P     +A         ++ I +E  D R+ R  +IN    R   E+   L+   
Sbjct: 61  IRAGAP---QAYAGALIANHGRELGIDIEINDGRANRA-RINQSPARRPREIVGILQTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174
             P    +  G   +RRRFLD ++ A  PR      D+++++R R+ LL           
Sbjct: 117 FAPEDLSLVRGDPGDRRRFLDELLTARRPRMAGVRADYDKVLRQRSALLKTAGGALRRGA 176

Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLT 229
              +G    +     +  +A  G ++  +R+ +++ L+  ++   +          +   
Sbjct: 177 RSSDGASALATLDIWDGHLAAHGAQLLASRLRLVHDLAPHLVASYRSLAPESRPASVRYK 236

Query: 230 GFLDGKFDQSFCA------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
             L                      L+  +  +L + R+ +      L+GPHR DL +  
Sbjct: 237 SSLGTSLPPELLDPTREPDPDDVELLEVSFLNELSEMRQREIERGVCLVGPHRDDLELIL 296

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
            D+       S GE     + + L    L+ +  G  P+L+LD++ A LD  +R A    
Sbjct: 297 GDQPAK-GFASHGESWSFALSMRLGAFFLLRD-DGSDPVLMLDDVFAELDRKRRAA-LAG 353

Query: 338 VTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNH 370
           V     Q+ +T    + V   L  +A    +  H
Sbjct: 354 VAAQAEQVLITAAVAEDVPAEL--SATRFGVEAH 385


>gi|91204849|ref|YP_537204.1| recombination protein F [Rickettsia bellii RML369-C]
 gi|122426139|sp|Q1RKJ9|RECF_RICBR RecName: Full=DNA replication and repair protein recF
 gi|91068393|gb|ABE04115.1| DNA replication and repair protein RecF [Rickettsia bellii
           RML369-C]
          Length = 360

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 121/361 (33%), Positives = 191/361 (52%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  +RN+ +L L  D      +G+NG GKTNILEAIS   PGRG R A  AD+ R
Sbjct: 6   LHSLIVENYRNFKNLELKTDNIPITIIGENGSGKTNILEAISLFYPGRGLRSARLADICR 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S    S  A ++   GLA+ S +++   +R  R  + N+  I   +EL+K   + WL 
Sbjct: 66  -ESEDHCSVRALLQSKLGLAEFSTQIKRISNR--RTTEYNNSKI-ANNELSKFTSMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P M+ IF+  + +RR+F DR+V+  DP+H   +  +E  M+ RN++L E  +D++W  +I
Sbjct: 122 PQMEGIFTSGTSDRRKFFDRIVYNFDPKHAELVSKYEHYMQERNKILAEDMWDNNWLKTI 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA+  + I   R++ +  +   I +   +  FP  +LS+ G ++ K       +   
Sbjct: 182 EEKMADTSIYIANNRLKTLEFMQQAIDDL--ENEFPKAELSIDGMVEQKILNGEEDVVGF 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
            A +L   R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 IAAELHKTRDKDKLLGRTSFGVHKSDFLVKHKHKNILAKFCSTGEQKAILIAIILAEMNY 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
               T  APILLLDE+  HLD+ +RN L      I  Q+++T TD    +     ++ ++
Sbjct: 300 AIKLTKTAPILLLDEVFVHLDDRRRNYLTEFFISINLQLWVTATDLKGIEEFGNKSQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|332521002|ref|ZP_08397462.1| DNA replication and repair protein RecF [Lacinutrix algicola
           5H-3-7-4]
 gi|332043532|gb|EGI79728.1| DNA replication and repair protein RecF [Lacinutrix algicola
           5H-3-7-4]
          Length = 359

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 153/372 (41%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N+ S    F+      VG+NGVGKTN+L+AI  LS G+ +     +  
Sbjct: 1   MILKSLSLLNYKNFDSKTFEFNDTINCLVGNNGVGKTNVLDAIYHLSFGKSYFNPIASQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     FF              I + L+       + ++ N        E    L +  
Sbjct: 61  IKHDED-FFVVNGEYNKENKSEKIVVSLKRG---QKKVIKRNAKAYEKFSEHIGFLPLVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   + +  S+ RR+F+D ++   D  +   +I + + +  RN LL        F+ 
Sbjct: 117 ISPADRDLITEGSVTRRKFIDSVISQSDKFYLEHLIKYNKALAQRNSLLKYFALNNTFNQ 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                  AQ+   G ++   R   +     +     Q  +  +  + L    D       
Sbjct: 177 DTLDIYNAQLHTFGTEVFNKRNSFLETFIPIFKSRYQAISNGNEIVDLVYKSD------- 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                E    L      D   + T +G H+ DL+ +  +  I    GS G+QK  L+ + 
Sbjct: 230 -LFDNELESLLKKVINKDKAVQYTSVGVHKDDLLFNIDEHPIK-KFGSQGQQKSFLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVF 355
           LA    I   +G  PILLLD+I   LDE++   + ++V D    Q+F++ T     ++  
Sbjct: 288 LAQFDFIKQQSGVNPILLLDDIFDKLDEERVTQIIKLVDDENFGQLFISDTHAERTENAV 347

Query: 356 DSLNETAKFMRI 367
             ++++ +  ++
Sbjct: 348 KQVHQSYEIFKL 359


>gi|220933196|ref|YP_002512095.1| DNA replication and repair protein RecF [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|254790497|sp|B8GSS3|RECF_THISH RecName: Full=DNA replication and repair protein recF
 gi|219994506|gb|ACL71108.1| DNA replication and repair protein RecF [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 360

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/367 (22%), Positives = 154/367 (41%), Gaps = 14/367 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +   R    +R+   +   +  G NG GKT++LEAI  LS G  FR    + +
Sbjct: 1   MILNRLEVRGLRILRHVRMDPVSGLNLVHGVNGAGKTSLLEAIHLLSTGHSFRTRQLSPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +     AR++   G     + +  R  R     +I    +R + +L + L +  
Sbjct: 61  LAPDCDA-VEVVARIQSTGGGEPWPVGI--RKTRDSTTARIRGENVRSLADLARLLPLQV 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + SG    RR FLD   F  DP +      +  L+  RN  L +    +   S
Sbjct: 118 MHPESHLLVSGGPGYRRAFLDWGCFHTDPAYHDHWRRYRHLLCQRNAALRDRSP-ARLLS 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + +  + E G  +++AR   +  L   +    Q+       L+L        ++S     
Sbjct: 177 AWDTALGEAGSALDLARATHLQTLLPYLDSLKQELP-ETSGLALEYRRGWNPEESLS--- 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
               + L    + D  +  T +GPHR++L+     + +     S G+QK V++ + +A +
Sbjct: 233 ----ESLAHSVQRDRSAGFTQVGPHRAELLCRLDGRPVAQV-ASRGQQKSVVLMLKMAQS 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
             +  T GF P++L+D++ A LD   R  L   +  +GSQ+F+T  +         ++ +
Sbjct: 288 LWLMETLGFPPVVLVDDLPAELDARHRGWLMNCLQGLGSQVFVTAIESDQVPLSGWDSWQ 347

Query: 364 FMRISNH 370
              + + 
Sbjct: 348 MFHVEHG 354


>gi|308175817|ref|YP_003915223.1| DNA replication and repair protein RecF [Arthrobacter arilaitensis
           Re117]
 gi|307743280|emb|CBT74252.1| DNA replication and repair protein RecF [Arthrobacter arilaitensis
           Re117]
          Length = 387

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/393 (21%), Positives = 159/393 (40%), Gaps = 32/393 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L+++ FR+YA   +       + +G NGVGKTNI+E+I +L+     R ++ A +
Sbjct: 1   MYISQLSLTGFRSYAQADVHLAPGINVLIGPNGVGKTNIVESIGYLANLSSHRVSNDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S              G    ++++E    +  R  +IN        E+   +R   
Sbjct: 61  LNFESDRALIRGTV---HRGPQTTTLEVEITSGKINRA-RINRANPVRAREILGMVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G    RR+FLD ++ A+ P       D++R+++ RN LL           
Sbjct: 117 FAPEDLALIKGDPSNRRKFLDELLVALRPIESGTKNDYDRIVKQRNALLKSIRGKSKLST 176

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGK 235
              +   + + Q+   G ++   R++++  +   +        +     +      L+G+
Sbjct: 177 SQENTLKAWDLQLTMTGARLIRGRLDVLALIRPYMQAAYADLADGAKDARAVYRSSLEGE 236

Query: 236 FDQ-----------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
            D+               ++E     +   R  +     +L GPHR DL +     A   
Sbjct: 237 LDENSLPAEDLESLEQEEIQELLLTAIEANRSREVDRGISLFGPHRDDLTLILGP-APAK 295

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDI 341
            + S GE     + + LA  R+  +     G  PIL+LD++ A LD  +R+ L  IV   
Sbjct: 296 GYASHGETWSFALALRLAAYRVFGDDDPRPGSGPILILDDVFAELDTTRRDRLAHIVAGA 355

Query: 342 GSQIFMT-GTDKSVFDSLNETAKFMRISNHQAL 373
             Q+ +T    + V ++L     F ++S  Q +
Sbjct: 356 E-QVLVTAAVVEDVPEAL--KGHFFQVSPGQVV 385


>gi|313112549|ref|ZP_07798213.1| putative recombination protein F [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310625131|gb|EFQ08422.1| putative recombination protein F [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 373

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 86/382 (22%), Positives = 162/382 (42%), Gaps = 30/382 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L ++ +RN A+ +L    + T+  G+NG GKTN+LEAI  L+ G+ FR    A++
Sbjct: 1   MRLLSLEVANYRNIAAAQLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGL-------ADISIKLETRD-DRSVRCLQINDVVIRVVDEL 116
            R G  +F    A  +            A++ I + T D  R  R   +N    +    L
Sbjct: 61  VRRG-ETFAVLEAVTQRTRQEDQEPDEPANVRITVGTPDAQRPGRYASVNGSPPKRAAGL 119

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
                     P    +  G    RRRFLD  +  + P +      + R ++ +N LL   
Sbjct: 120 AGSFPAVVFDPGHLSLVKGAPEGRRRFLDAALCQLYPGYLATYRRYVRALQQKNALLRHS 179

Query: 177 YFDS--------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
              +        +    +  ++A  G  I   R E +  L+ L      + +    ++++
Sbjct: 180 AGGTERPWAEKCALLEVLNVELAAQGEAIQKRRREYLALLTPLACANYAELSHGAERMAV 239

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                 +F+          +  L   +  +  + ++L G HR D+ +   D+   +   S
Sbjct: 240 RYA--AQFEPGG------LSALLKQRQNEELRAGQSLCGIHREDVELLLDDQPAKV-FAS 290

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+Q+ V++ + +A A   +  TG  P+LLLD++ + LDE ++  L   + +   Q F+T
Sbjct: 291 QGQQRSVVLSLKMAEAAAAARITGEHPVLLLDDVLSELDEGRKQYLLTRMKEK--QTFVT 348

Query: 349 GTDKSVFDSLNETAKFMRISNH 370
             D + F  L    +  R++  
Sbjct: 349 SCDDTAF--LKTDGEVYRMNGG 368


>gi|92112139|ref|YP_572067.1| recombination protein F [Chromohalobacter salexigens DSM 3043]
 gi|122421034|sp|Q1R1P0|RECF_CHRSD RecName: Full=DNA replication and repair protein recF
 gi|91795229|gb|ABE57368.1| DNA replication and repair protein RecF [Chromohalobacter
           salexigens DSM 3043]
          Length = 361

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 145/372 (38%), Gaps = 16/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ LN    RN A+L +       +  G NG GKT++LE +  L   R FR       
Sbjct: 1   MPLERLNFLGLRNLAALDMRPGPGINLITGANGSGKTSLLEGMHVLGMARSFRTQKLKHA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               + +  +   RV G      +++ +    D S   ++++      V  L + L +  
Sbjct: 61  IAHDADA-VTLHGRVAGD---PPVALGVRRARDASELEIRLDGERGVRVARLAEALPLQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P   R+  G    RR FLD  VF +            R ++ RN LL     D+    
Sbjct: 117 INPDAFRLLEGSPAARREFLDWGVFHVKHEFFEAWRRVRRALKHRNALLRHDRIDARSMR 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             E ++A     ++  R E +   +    + +  E  P   LSL  +      +      
Sbjct: 177 VWEQELAHWSELLDALRSEYMAQFAKAFEDTLH-ELLPLSGLSLRYYRGWDKQRG----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
               + L  GR  D     T  GP R+DL +    K   +   S G+QK+V+  + LA  
Sbjct: 231 --LLEVLEGGRDTDRQMGFTQQGPQRADLRLRI-GKRAAVEELSRGQQKLVVSALKLAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE---T 361
           RL+   TG   + L+D++ A LD   R      +  +  Q+F+T  ++    +  +    
Sbjct: 288 RLLDELTGRTCVYLIDDLPAELDVTHRRIFCHWLERLRCQVFITSVEREALANAWQSETD 347

Query: 362 AKFMRISNHQAL 373
                + + + L
Sbjct: 348 VAMFHVEHGRLL 359


>gi|323143412|ref|ZP_08078097.1| putative DNA replication and repair protein RecF [Succinatimonas
           hippei YIT 12066]
 gi|322416817|gb|EFY07466.1| putative DNA replication and repair protein RecF [Succinatimonas
           hippei YIT 12066]
          Length = 359

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/350 (23%), Positives = 155/350 (44%), Gaps = 12/350 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L IS+FRN   L         +  G NG GK+++LEA+S+L+ GR FR  +Y  +
Sbjct: 1   MFLSRLVISDFRNLEMLDFKPAPGFNVIYGPNGSGKSSVLEAVSYLALGRSFRGYNYQYL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  SF S FA V         +I +  +       ++IN   ++ + +L   + +  
Sbjct: 61  IKNGRKSF-SVFASVNENHAALTDNIGI-AKGRGEDLQIKINGSKVQRLIDLVDKICVQI 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +     RR F+D  V+  +P+ +    +++R+++ RN LL     D    S
Sbjct: 119 IHPQGIELVTQGPELRRNFIDWGVYYSEPKFKDLWFNYKRVIKQRNILLKSKASDFE-IS 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             +  ++ L  KI+  R   +  L+ + +    ++  P   L          D       
Sbjct: 178 VWDDLLSSLSEKIDEFRCSYLEKLN-VFLSAQCEQFLPKFSLKFELHSGWNKDF------ 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +    L    + D +   T  G HR+DL +   D     A  S G+ K+++  + LA  
Sbjct: 231 -KLRDLLAQNLEKDRVLGYTFYGCHRADLKIK-SDSVSAGATLSRGQLKLLVCAMRLAQG 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            L+ + TG + I L+D++++ LD + +  L   +     Q+F+T   + +
Sbjct: 289 LLLKHETGRSCIYLIDDLNSELDSNSQKILLENLKQCSCQVFITNISREM 338


>gi|221135257|ref|ZP_03561560.1| Recombinational DNA repair ATPase [Glaciecola sp. HTCC2999]
          Length = 366

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/374 (22%), Positives = 162/374 (43%), Gaps = 18/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + IS+FRN  S  +   A   + +G NG GK++ LE++ +L  GR FR   +  V
Sbjct: 1   MKLDKVQISQFRNIESATIYPSAHLNVVIGQNGSGKSSFLESLHYLGFGRSFRTNKHRHV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  S FS FA    +    +  I L  R+++      IN    + + +L   + +  
Sbjct: 61  IQSG-LSQFSVFAECSDINN-DNHKIGL-MRNNKDEFLCSINGKRSQRIADLVSQIPVQI 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180
             P    +  G    RR+FLD  +F ++       +++ ++++ RN LL          +
Sbjct: 118 FTPQSTELLLGSPSNRRKFLDWGLFHVEQSFFNLSLNYSKILKQRNALLKYKQTGKPVSN 177

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                   Q+A  G  I+  R + I+ L  +I + + K+  P   L ++         + 
Sbjct: 178 DEMDYWSHQLAIYGENIDTYRQKYISEL-KMIFKRISKQFLPEFSLEISYNKGWDSSVN- 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                 +   L +    D+    T IG H++D+ +   D  +     S G+ ++++  + 
Sbjct: 236 ------FVSALREKLLYDTRMGYTSIGIHKADIKIK-ADNIVATERLSRGQLRMLVAALQ 288

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+    +  +T  + + LLD+I A LDEDKR      +    +Q+F+T  +KS    + +
Sbjct: 289 LSQTLHLFESTNKSGVFLLDDIGAELDEDKRYHFIDALLATNTQLFVTAIEKSHLSFVEK 348

Query: 361 --TAKFMRISNHQA 372
               K   + +   
Sbjct: 349 YNDKKMFHVEHGHV 362


>gi|157964093|ref|YP_001498917.1| recombination protein F [Rickettsia massiliae MTU5]
 gi|166918725|sp|A8F0D4|RECF_RICM5 RecName: Full=DNA replication and repair protein recF
 gi|157843869|gb|ABV84370.1| DNA replication and repair protein RecF [Rickettsia massiliae MTU5]
          Length = 360

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 188/361 (52%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  AD+ +
Sbjct: 6   LHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICK 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S       A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL 
Sbjct: 66  T-SEDHCLVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P M+ IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   I
Sbjct: 122 PHMEGIFTSSSSDRRKFLDRIVYNFDPKHTELVSKYEYYMHERNKILVEDIRDDNWLKII 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA++   I   R++ +  +   I +   +  FP   LS+ G ++ K       +   
Sbjct: 182 EEKMADISNHIANNRLKTLEFMQHAIDDL--ENEFPKADLSIDGIVEQKILNGEENIVSF 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
              +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 ITAELYQTRNNDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
               T  APILLLDE+  HLD+ +R  L    T +  Q+++T T+    ++    A+ ++
Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFFTGLNMQLWVTTTNLEGIENFATKAQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|325677517|ref|ZP_08157181.1| recombination protein F [Rhodococcus equi ATCC 33707]
 gi|325551764|gb|EGD21462.1| recombination protein F [Rhodococcus equi ATCC 33707]
          Length = 408

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 165/394 (41%), Gaps = 37/394 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++  ++ +FR++ ++ +  +   T+FVG NG GKTN+LEA+ +LS     R +S A +
Sbjct: 1   MFVRKFSLRDFRSWDAVTVDLEPGCTVFVGRNGHGKTNLLEALGYLSTLSSHRVSSDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+P     +A         ++ I +E  D ++ R  +IN    R   E+   L+   
Sbjct: 61  IRAGAP---QAYAGALIANHGRELGIDIEINDGKANRA-RINQSPARRPREIVGILQTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174
             P    +  G   +RRRFLD ++ A  PR      D+++++R R+ LL           
Sbjct: 117 FAPEDLSLVRGDPGDRRRFLDELLTARRPRMAGVRADYDKVLRQRSALLKTAGGALRRGA 176

Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLT 229
              +G    +     +  +A  G ++  +R+ +++ L+  ++   +          +   
Sbjct: 177 RSSDGASALATLDIWDGHLAAHGAQLLASRLRLVHDLAPHLVASYRSLAPESRPASVRYK 236

Query: 230 GFLDGKF------------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
             L                      L+  +  +L + R+ +      L+GPHR DL +  
Sbjct: 237 SSLGTSLPTELLDPTREPEPDDVELLEVSFLNELSEMRQREIERGVCLVGPHRDDLELIL 296

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
            D+       S GE     + + L    L+ +  G  P+L+LD++ A LD  +R A    
Sbjct: 297 GDQPAK-GFASHGESWSFALSMRLGAFFLLRD-DGSDPVLMLDDVFAELDRKRRAA-LAG 353

Query: 338 VTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNH 370
           V     Q+ +T    + V   L  +A    +  H
Sbjct: 354 VAAQAEQVLITAAVAEDVPAEL--SATRFGVEAH 385


>gi|157826419|ref|YP_001495483.1| recombination protein F [Rickettsia bellii OSU 85-389]
 gi|226737824|sp|A8GUF0|RECF_RICB8 RecName: Full=DNA replication and repair protein recF
 gi|157801723|gb|ABV78446.1| recombination protein F [Rickettsia bellii OSU 85-389]
          Length = 360

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 121/361 (33%), Positives = 190/361 (52%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  +RN+ +L L  D      +G+NG GKTNILEAIS   PGRG R A  AD+ R
Sbjct: 6   LHSLIVENYRNFKNLELKTDNIPITIIGENGSGKTNILEAISLFYPGRGLRSARLADICR 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S    S  A ++   GLA+ S +++   +R  R  + N+  I   +EL+K   + WL 
Sbjct: 66  -ESEDHCSVRALLQSKLGLAEFSTQIKRISNR--RTTEYNNSKI-ANNELSKFTSMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P M+ IF   + +RR+F DR+V+  DP+H   +  +E  M+ RN++L E  +D++W  +I
Sbjct: 122 PQMEGIFMSGTSDRRKFFDRIVYNFDPKHAELVSKYEHYMQERNKILAEDMWDNNWLKTI 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA+  + I   R++ +  +   I +   +  FP  +LS+ G ++ K       +   
Sbjct: 182 EEKMADTSIYIANNRLKTLEFMQQAIDDL--ENEFPKAELSIDGMVEQKILNGEEDVVGF 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
            A +L   R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 IAAELHKTRDKDKLLGRTSFGVHKSDFLVKHKHKNILAKFCSTGEQKAILIAIILAEMNY 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
               T  APILLLDE+  HLD+ +RN L      I  Q+++T TD    +     ++ ++
Sbjct: 300 AIKLTKTAPILLLDEVFVHLDDRRRNYLTEFFISINLQLWVTATDLKGIEEFGNKSQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|120435150|ref|YP_860836.1| DNA replication and repair protein RecF [Gramella forsetii KT0803]
 gi|226737803|sp|A0LZH4|RECF_GRAFK RecName: Full=DNA replication and repair protein recF
 gi|117577300|emb|CAL65769.1| DNA replication and repair protein RecF [Gramella forsetii KT0803]
          Length = 359

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 157/374 (41%), Gaps = 26/374 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  ++N  +    FD +    VG+NGVGKTN+L++I  LS G+ +     +  
Sbjct: 1   MHLKNLSLLNYKNLKTAEFDFDEKINCLVGNNGVGKTNVLDSIYLLSFGKSYFNPITSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S  FF      +  +    I   L +      + ++ N+     V +    +    
Sbjct: 61  INHDSD-FFVVEGEFKKNDKAEKI---LASAKKGQKKIIKRNNKAYEKVSDHIGFIPTVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   +    S  RR+F+D ++   D  +  +++ + +L+  RN LL        F+ 
Sbjct: 117 ISPADRDLIIEGSETRRKFMDGVISQSDQSYLNKLLQYTKLVSQRNSLLKYFAANNTFER 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQ 238
                   QM+ LG  +   R E +     +  +       N   + ++    L   FD 
Sbjct: 177 DTLEVYNLQMSSLGQDLFEKRKEFLKEFIPIFNKRYADITNNKEIVDINYKSQL---FDN 233

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   L       L +  + D   + T +G H+ DL  +     I    GS G+QK  L+ 
Sbjct: 234 SLANL-------LEENLQKDMALQYTSVGTHKDDLSFEIEGHPIK-KFGSQGQQKSFLIA 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS---- 353
           + LA    I   +   PILLLD+I   LDE++   +  +V TD   QIF++ T       
Sbjct: 286 LKLAQFDFIKKISKVNPILLLDDIFDKLDENRVAHIVALVATDELGQIFLSDTHAERTEK 345

Query: 354 VFDSLNETAKFMRI 367
           V  S N++ K  ++
Sbjct: 346 VVKSSNQSYKIFKL 359


>gi|299143459|ref|ZP_07036539.1| DNA replication and repair protein RecF [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298517944|gb|EFI41683.1| DNA replication and repair protein RecF [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 361

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 90/373 (24%), Positives = 176/373 (47%), Gaps = 18/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L +S FRNY  L      Q  +  G+N +GKTN+LEAI  L+ G+ FR    +++
Sbjct: 1   MKILNLELSNFRNYKYLYYNPKGQINVITGENAMGKTNLLEAIYVLTVGKSFRTVKDSEL 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +IG          +    E   D++I  + ++  S+    +N      + +  +     
Sbjct: 61  IQIGGEQTNLKALSINFEYEDYLDVNIYKDKKNKYSINSDDMN------LSQYRRDFSSV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              PS   +      ERR++LD ++  +   +   +  + +++  RN+LL +   +    
Sbjct: 115 IFSPSDLNMVKFSPSERRKYLDSLILKLSSVYEHNLYRYRKIIFERNKLLKK-NINYDLL 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              + Q+A+ GVKI   R++++    + +   ++       +K++    +    D+    
Sbjct: 174 EVYDFQLAKYGVKILRERLKILKEFENYVKYHFLNLSGGESLKITYLSTIPLMSDEE--E 231

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++ +   L + RK D   + T IGPHR D+     + +    +GS GE + V++ + L+
Sbjct: 232 MEKIFLDSLKNCRKRDLEIKFTTIGPHRDDIDFKIENLSAK-TYGSQGEIRTVVLSLKLS 290

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSLNE 360
              +I N    +P+LLLD++ + LD+++ + L   + ++  Q F+T T  ++  F SL  
Sbjct: 291 EVDIIKNYQKNSPLLLLDDVFSELDKNRASYLINSLKNM--QTFITSTNLNEENFRSL-- 346

Query: 361 TAKFMRISNHQAL 373
            A F  I N Q +
Sbjct: 347 NADFYEIKNGQII 359


>gi|257437731|ref|ZP_05613486.1| DNA replication and repair protein RecF [Faecalibacterium
           prausnitzii A2-165]
 gi|257200038|gb|EEU98322.1| DNA replication and repair protein RecF [Faecalibacterium
           prausnitzii A2-165]
          Length = 373

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 85/381 (22%), Positives = 157/381 (41%), Gaps = 28/381 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L ++ +RN AS  L    + T+  G+NG GKTN+LEAI  L+ G+ FR    A++
Sbjct: 1   MRLLSLEVTNYRNIASASLTPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLAD------ISIKLETRDD-RSVRCLQINDVVIRVVDELN 117
            R G P      + +   +   +      + + + T D  R  R   +N    R    L 
Sbjct: 61  VRRGEPFAVLEASTLRAQQEEQEPDEPNRVRLTVGTPDSQRPGRYASVNGAAPRRAAGLA 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
                    P    +  G    RR+FLD  +  + P +      + R ++ +N LL    
Sbjct: 121 GSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLTVYRRYLRALQQKNALLRRSP 180

Query: 178 FDS--------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
                      +    +  ++A  G  I   R   +  L+ L     ++ +    ++ L 
Sbjct: 181 AGQERPYAEKMALLEVLNTELAAQGEAIQQRRRAYLERLAPLACANYEELSHGAERMELR 240

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
                +F+          A  L   +  +  + ++L GPHR D+ +   D        S 
Sbjct: 241 YA--AQFEPGG------LAALLKARQNEEVRAGQSLCGPHREDMEL-LLDGQPARVFASQ 291

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q+ V++ + +A A   +  TG  P+LLLD++ + LD+ ++  L   + +   Q F+T 
Sbjct: 292 GQQRSVVLSLKMAEAAAAAAITGEHPVLLLDDVLSELDDGRKQYLLTRMREK--QTFVTS 349

Query: 350 TDKSVFDSLNETAKFMRISNH 370
            D + F  L    +  R++  
Sbjct: 350 CDDTAF--LKTDGEVYRMNGG 368


>gi|194332856|ref|YP_002014716.1| DNA replication and repair protein RecF [Prosthecochloris aestuarii
           DSM 271]
 gi|226737818|sp|B4S937|RECF_PROA2 RecName: Full=DNA replication and repair protein recF
 gi|194310674|gb|ACF45069.1| DNA replication and repair protein RecF [Prosthecochloris aestuarii
           DSM 271]
          Length = 370

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 81/363 (22%), Positives = 155/363 (42%), Gaps = 10/363 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  + I  FR ++ L         +  G NG GKTNILEAI + +  +GF R +    
Sbjct: 1   MRLDEIKIQNFRKHSELIFSPSEGINLIFGPNGSGKTNILEAIHYCALTKGFNRTTDRQC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               + SF               + +   T   +S   + +N+  +     L   +    
Sbjct: 61  MNFSAESFLLKSLFTSDTGCQYRVHVDFSTNGGKS---ISLNNSQLEKFSALIGLIPCIL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P+   I  G   ERRRFLD  +  I   +  +++ + R+++ RN LL   +  SS   
Sbjct: 118 FSPAEITIVHGSPQERRRFLDNALCQISKSYLEQLLQYRRILQQRNALLHSSWDRSSPAP 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-KLSLTGFLDGKFDQSF 240
             +     +AE G  I   R++ ++             +   I +L+    L      S 
Sbjct: 178 DMNIWTELLAESGAFIIKERMDFLDEFQPYFSNAYAILDTGEIPRLTYRSSLGKALVSSD 237

Query: 241 CA-LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
            A + +    +  + +  + + ++TL+GPHR +++  Y D +    + S G+ +  L+ +
Sbjct: 238 RAGIADSLMHRFGEIQHQEQVRKQTLLGPHRDEILF-YLDGSDVKKYASQGQTRTFLIAL 296

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            +A  R + +  G   I LLD+I + LD+ +   +  ++   G Q  +T T+K+    L+
Sbjct: 297 KVALQRFLFDKKGEQSIFLLDDIFSELDQRRVERVLEMIAGFG-QSLITSTEKTGLSFLH 355

Query: 360 ETA 362
           E +
Sbjct: 356 EIS 358


>gi|289662281|ref|ZP_06483862.1| recombination protein F [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 368

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 145/368 (39%), Gaps = 9/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +    L+I   R + ++ L   +   +  G+NG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MHAVRLSIHRLRRFQTVELHPASALNLLTGNNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+          EG     + + +   R        +++   +  +  L   L +  
Sbjct: 61  IQQGANDLEVFVEWKEGSGVAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYARALKQRNALLKQG-AQPRMLE 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R+  +  L   ++        P + LS   F  G          
Sbjct: 180 AWDHELAESGETLTSRRMRYLERLQDRLIPVAGAI-APSLGLSALAFAPGWKRHEVS--- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R+ D  +  T  GPHR+D +  +       A  S G+ K+  +   LA A
Sbjct: 236 --LADALLLARERDRQNGYTSQGPHRADWMPRFDVLPGKDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
              +   G  P++ LD++ + LD   +  + + +    +Q+ +T T+            +
Sbjct: 293 EDFAFERGEWPVIALDDLGSELDRHHQARVLQRLVSAPAQVLITATETPPGLVDAGALLQ 352

Query: 364 FMRISNHQ 371
              + + Q
Sbjct: 353 RFHVEHGQ 360


>gi|283457092|ref|YP_003361655.1| recombinational DNA repair ATPase [Rothia mucilaginosa DY-18]
 gi|283133070|dbj|BAI63835.1| recombinational DNA repair ATPase [Rothia mucilaginosa DY-18]
          Length = 450

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 88/388 (22%), Positives = 157/388 (40%), Gaps = 26/388 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  +++ ++R YA L L   A  T+F+G NGVGKTNI+EAI + +     R +    +
Sbjct: 38  VYIDHISLLDYRTYALLSLPLSAGVTVFLGSNGVGKTNIVEAIDYAASLSSHRVSHDGPL 97

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+      + R   + G      + E    +S R ++IN        E     R   
Sbjct: 98  VRAGAS---RAYIRTRTVRGSQQTVTEFEIAPGQSNR-VRINRAAPVRAKEALGIARTVL 153

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P   ++  G    RRRF+D +  ++ P       ++ER++R RN LL     ++    
Sbjct: 154 FSPEDLQLVKGDPAGRRRFVDDLASSLRPVVSGYRSEYERILRQRNSLLKSMQRNARDEN 213

Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-------- 230
             S  S  + Q++ LG ++  AR  ++      +            ++            
Sbjct: 214 ALSTLSVWDEQLSTLGAQLLSARFRLLQRFLPQLRRAYAGLTDGSKEVGFNYESTVFSSM 273

Query: 231 ---FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
               ++         LKE   +   + R+ +     TL+GPHR D+ +      +     
Sbjct: 274 GERSIEHAALMRVEDLKEALMRGFAERRRDEIERGVTLVGPHREDITLLLGGMPVKY-FA 332

Query: 288 STGEQKVVLVGIFLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
           S GE     + + LA   +        G +PIL+LD++ A LD  +R+ L  +V D   Q
Sbjct: 333 SHGESWSFALALKLASWFVHVEDDSSVGSSPILILDDVFAELDSARRHRLGAMVADAE-Q 391

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQA 372
           + +T    S         + + ++  +A
Sbjct: 392 VLITCAVLSDIPEELGDYRLVSVTAGRA 419


>gi|227549439|ref|ZP_03979488.1| recombination protein F [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078516|gb|EEI16479.1| recombination protein F [Corynebacterium lipophiloflavum DSM 44291]
          Length = 394

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 100/393 (25%), Positives = 173/393 (44%), Gaps = 33/393 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++ +FR++  L L  +   T+F G NG GKTNI+EA+ + S     R ++ A +
Sbjct: 1   MYVRDLDLRDFRSWPELTLTLEQGATVFAGRNGHGKTNIVEALHYTSTLGSHRVSTDAPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G      S     +G E    + IK            QIN   ++   E+   LR  
Sbjct: 61  IRSGCSDARVSVTTVNDGRELTTHLLIK-----ANGANQAQINRTRLKSAREVLGVLRTV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL-------LTEG 176
              P   ++ +G   ERRRFLD +  +  PR      D+++++R RN L       L  G
Sbjct: 116 MFSPEDLKLVAGEPAERRRFLDDLATSRAPRLGGAKADYDKVLRQRNALLRSSAHELRRG 175

Query: 177 YFDS------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSL 228
           Y D       +     + Q+A LG ++   R+E+++ LS  I E             +S 
Sbjct: 176 YGDDTGASALATLDVWDLQLARLGAEVTAGRLELLDVLSPHIAESYAAVAPESRPASVSY 235

Query: 229 TGFLD-------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           +  +D       G+  +    ++     +L   R+ +     TL+GPHR D+++   D  
Sbjct: 236 SSTVDDAVRSLAGEPSRDPGVIEAAMLTELARRRREEIERTTTLVGPHRDDMVLMLGDTP 295

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE     + + LA   L+++  G  P+L+LD++ A LD  +R  L   V   
Sbjct: 296 AK-GYASHGETWSYALALHLAEYELLASE-GSHPVLILDDVFAELDALRRQRLV-AVAHS 352

Query: 342 GSQIFMT-GTDKSVFDSLNET-AKFMRISNHQA 372
             Q+ +T      + D+L +  +    +S H+A
Sbjct: 353 AEQVLITAAVGDDLPDNLADAVSARYLVSMHEA 385


>gi|225012738|ref|ZP_03703173.1| DNA replication and repair protein RecF [Flavobacteria bacterium
           MS024-2A]
 gi|225003271|gb|EEG41246.1| DNA replication and repair protein RecF [Flavobacteria bacterium
           MS024-2A]
          Length = 359

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 86/354 (24%), Positives = 153/354 (43%), Gaps = 18/354 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + ++ ++N  S    F+ +   F+G+NGVGKTNIL+AI  L+ G+ +        
Sbjct: 1   MHLKQITLTNYKNITSKTFDFNPKINCFIGNNGVGKTNILDAIYHLAFGKSYFNPISIQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +IG+  FF+   R E  E    I   ++       + L+ N  +   + +    +    
Sbjct: 61  IQIGTD-FFALEGRYETNEREEKIICSVK---KGQKKTLKRNGKIYDRIADHIGLIPTVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   + S  S  RR+F+D ++   D    R +I++ +++  RN LL        FD+
Sbjct: 117 ISPADRDLISEGSSTRRKFIDAVIGQTDAEFLRNLIEYNKILSQRNALLKYFALNHTFDA 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                   Q+   G  I+  R   +     +  E     +     + L+      +D   
Sbjct: 177 DTLEIYNEQLTTRGQPIHEKRKLFMEQFIPIFKERYHSISDKKETVDLS------YDSQL 230

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +  +    L +    D M + T  G H+ D+ +   D+      GS G+QK  LV + 
Sbjct: 231 HTISHKIL--LEESLSKDRMIQHTTTGIHKDDIHL-LKDEQPIKKFGSQGQQKTFLVALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKS 353
           LA    +   TG APILLLD+    LD+ + + +  +V      QIF+T T + 
Sbjct: 288 LAQFDFLKAETGVAPILLLDDAFDKLDQQRVSQIISLVDQNDFGQIFITDTHED 341


>gi|332881092|ref|ZP_08448760.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332681004|gb|EGJ53933.1| DNA replication and repair protein RecF [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 359

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 82/359 (22%), Positives = 149/359 (41%), Gaps = 18/359 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  ++N +S  L F A    FVG+NG GKTN+L+AI  L  G+ +   S    
Sbjct: 1   MFLKKVTVVNYKNISSKTLEFSATINCFVGNNGAGKTNLLDAIYHLGMGKSYFSPSAVQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F+      E       I   L+    + ++    N      + +      +  
Sbjct: 61  IRHDED-FYLIDGFFESNSREEQIVCSLKKGQKKMMKH---NGKAYERLSDHIGKYPMVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
           + P+   +    S  RR+FLD ++   D  +   +I + RL+  RN LL +         
Sbjct: 117 ISPADRDLIVEGSETRRKFLDSVIAQTDREYLELLIRYNRLLLQRNTLLKQIAESGISAF 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 +AQ+A LG  I   R + +   + +             ++ +            
Sbjct: 177 DTLQVYDAQLAPLGQFIYEKRRQFMEGFAPIFSYQYAYIAGGQEEVKVVY--------ES 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              ++     L   ++ D  ++ T  G H+ DL ++     I   +GS G+QK +L+ + 
Sbjct: 229 MLHEQTQEALLAQHQQRDLQAQYTTAGIHKDDLRLEIQGYPIK-KYGSQGQQKSLLIALK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGTDKSVFDSL 358
           L+   L+ +T G  PI+LLD+I   LD+ +   L ++VT     Q+F+T T     + +
Sbjct: 288 LSQFELLKHTLGITPIVLLDDIFDKLDDTRVAQLVQLVTQNHFGQLFITDTHSQRTEEV 346


>gi|285016824|ref|YP_003374535.1| DNA replication and repair protein RecF [Xanthomonas albilineans
           GPE PC73]
 gi|283472042|emb|CBA14549.1| probable dna replication and repair protein recf [Xanthomonas
           albilineans]
          Length = 366

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 82/375 (21%), Positives = 144/375 (38%), Gaps = 16/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+    R + S+ L       +  GDNG GKT ILEA+  ++ GR FR      +
Sbjct: 1   MHLFRLDFHHLRRFPSIELTPAPGMNLITGDNGAGKTTILEAMHLMAYGRSFRCRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDD----RSVRCLQINDVVIRVVDELNKHL 120
            R G          VE  E  AD       R            +++   +  +  L   L
Sbjct: 61  IRQGQAGLD---VFVEWHEQAADTGQTRRRRAGLQHSGQDWRGRLDGQDVPYLGTLCAAL 117

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +    P    + SG    RRRF+D  +F ++P        + R ++ RN LL  G   +
Sbjct: 118 AVVTFEPGSHVLVSGGGEARRRFVDWGLFHVEPDFLSLWRRYARALKQRNALLKSGGAGA 177

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +   + + ++AE G  +   R           +        P +  +L G    +F   +
Sbjct: 178 A-LDAWDHELAEAGEPLTSRRQHY-----LDRLLRRLLILAPELAPAL-GIEQLQFSPGW 230

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              +   A  L   R  D     T +GPHR+D  + +       A  S G+ K+  +   
Sbjct: 231 RRHEISLADALLLNRDRDRQLGYTTVGPHRADWSLSFAAIPGRDAL-SRGQAKLTALACL 289

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLN 359
           LA A   +   G  P++ LD++++ LD+  +  + + +    +Q+F+T T+         
Sbjct: 290 LAQAEDYAEQRGEWPVIALDDLASELDQHHQARVLQRLRAGPAQVFLTATETPQALSDAG 349

Query: 360 ETAKFMRISNHQALC 374
                  + + Q L 
Sbjct: 350 LPIARFHVEHGQILS 364


>gi|50953929|ref|YP_061217.1| recombination protein F [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|71648822|sp|Q6AHN3|RECF_LEIXX RecName: Full=DNA replication and repair protein recF
 gi|50950411|gb|AAT88112.1| DNA replication and repair protein RecF [Leifsonia xyli subsp. xyli
           str. CTCB07]
          Length = 385

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 91/391 (23%), Positives = 171/391 (43%), Gaps = 31/391 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++++FRNY +  + F+A   +FVG NG GKTN++E++ +LS     R +S   +
Sbjct: 1   MRVTHLSLTDFRNYGTAEVHFEAGANLFVGRNGQGKTNLVESLGYLSALGSHRVSSDQAM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       AR++      ++ ++++     + R  Q+N   I+   EL ++     
Sbjct: 61  IRQGAE-LAVVRARIQ--HEARELLVEVQLNRGAANRA-QVNRAAIK-PRELPRYFSSVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P    +  G    RRRFLD+++   +PR    + ++ER+++ RN LL           
Sbjct: 116 FAPEDLALVRGEPGVRRRFLDQLLIQRNPRLSAVIAEYERVLKQRNTLLKSARASRFRED 175

Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--------FPHIKLSLTG 230
                   + ++  LG ++  AR++++  LS+ ++   +            P + +S   
Sbjct: 176 QLGTLDIWDDRLLTLGAELINARLDLMARLSNPLVAAYRSVAGDDHHPRLLPQLTISGAH 235

Query: 231 FLDGKFD------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
             D   D       +F    + + + L   R  +     TL+GPHR D++ +        
Sbjct: 236 VEDEDDDSVADMTSAFGDTTDVFRQALAGVRWKELERGLTLVGPHRDDVLFELNGLPAK- 294

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNT--TGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
            + S GE     + + LA A L+     TG  P+L+LD++ A LD  +R  L   V    
Sbjct: 295 GYASHGESWSFALALKLASAELLRRESVTGD-PVLILDDVFAELDWARRRMLATTVAGYE 353

Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             +      + V   L   A  +RI     +
Sbjct: 354 QVLITAAVYEDVPAEL--AAHTIRIEAGAIV 382


>gi|16124414|ref|NP_418978.1| recombination protein F [Caulobacter crescentus CB15]
 gi|221233097|ref|YP_002515533.1| recombination protein F [Caulobacter crescentus NA1000]
 gi|239977550|sp|B8GXP9|RECF_CAUCN RecName: Full=DNA replication and repair protein recF
 gi|239977551|sp|P0CAW1|RECF_CAUCR RecName: Full=DNA replication and repair protein recF
 gi|13421272|gb|AAK22146.1| recF protein [Caulobacter crescentus CB15]
 gi|220962269|gb|ACL93625.1| DNA replication and repair protein recF [Caulobacter crescentus
           NA1000]
          Length = 387

 Score =  272 bits (695), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 130/378 (34%), Positives = 199/378 (52%), Gaps = 16/378 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            +  L +++FR+Y   RL    +     G NG GKTN+LEAIS LSPG+G R  S A+V 
Sbjct: 5   ALLSLTLADFRSYERARLETGGRSVYLFGANGAGKTNLLEAISLLSPGKGLRGVSLAEVG 64

Query: 66  RI--GSP--SFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           R   G      ++  A V+ G +    I   +E +   + R +++    +     L  H+
Sbjct: 65  RRLPGEAVGRAWAVAAEVQSGEDAPVRIGTGVE-QGGAARRTVRLEGETV-PPGRLADHV 122

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----- 175
           R  WL P+ DR+F   + ERRRF DR+VFA +P H      +++  R R RLL +     
Sbjct: 123 RPIWLTPAQDRLFLEAASERRRFFDRLVFAGEPAHAANANGYDKAQRERMRLLVDAAETG 182

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD-- 233
              D++W +++EA++AE G  +  AR   + AL + I     +  FP  +L LTG  +  
Sbjct: 183 APADAAWLTALEARLAEFGALLAQARARTLLALQAEIDGRGDR-PFPLARLGLTGEWERM 241

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                 F  ++ + A+ L   R  D  + R L GPHR DL + + +K    A  STGEQK
Sbjct: 242 ALEGAPFAEIELKLAQALASARARDGAAGRALTGPHRGDLAIFHVEKDRPAAECSTGEQK 301

Query: 294 VVLVGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            +++ + LA  ARL    +   P++LLDE++AHLD  +R AL   +T +  Q F+TGTD+
Sbjct: 302 ALILNLVLAQAARLSRAESAPNPVILLDEVAAHLDLTRRAALADELTALKLQAFLTGTDE 361

Query: 353 SVFDSLNETAKFMRISNH 370
           S+FD L   A  +R+ + 
Sbjct: 362 SLFDHLKGRALGVRVGDA 379


>gi|84621660|ref|YP_449032.1| recombination protein F [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|123523723|sp|Q2P9L9|RECF_XANOM RecName: Full=DNA replication and repair protein recF
 gi|84365600|dbj|BAE66758.1| DNA replication and repair protein recF [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 362

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 147/371 (39%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MHVMRLSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+          EG     + + +   R        +++   +  +  L   L +  
Sbjct: 61  IQQGANDLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQG-AQPRMLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R+  +  L   ++  V     P + LS   F  G          
Sbjct: 180 AWDHELAESGETLTSRRMRYLERLQDRLIP-VADVIAPSLGLSALTFAPGWKRHEVS--- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R  D  +  T  GPHR+D +  +       A  S G+ K+  +   LA A
Sbjct: 236 --LADALLLARDRDRQNGYTSQGPHRADWMPHFDVLPGKDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
              +      P++ LD++ + LD   +  +   +    +Q+ +TGT+  +   L +    
Sbjct: 293 EDFAFERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQMLITGTE--IPPGLADAGAL 350

Query: 365 ---MRISNHQA 372
                + + Q 
Sbjct: 351 LHRFHVEHGQV 361


>gi|58579626|ref|YP_198642.1| recombination protein F [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|75508390|sp|Q5H713|RECF_XANOR RecName: Full=DNA replication and repair protein recF
 gi|58424220|gb|AAW73257.1| DNA replication and repair RecF protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 368

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 146/371 (39%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MHVMRLSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+          EG     + + +   R        +++   +  +  L   L +  
Sbjct: 61  IQQGANDLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RRRFLD  +F ++P        + R ++ RN LL +G        
Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQG-AQPRMLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R+  +  L   ++  V     P + LS   F  G          
Sbjct: 180 AWDHELAESGETLTSRRMRYLERLQDRLIP-VADVIAPSLGLSALTFAPGWKRHEVS--- 235

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L   R  D  +  T  GPHR+D +  +       A  S G+ K+  +   LA A
Sbjct: 236 --LADALLLARDRDRQNGYTSQGPHRADWMPHFDVLPGKDAL-SRGQAKLTALACLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
              +      P++ LD++ + LD   +  +   +    +Q+ +T T+  +   L +    
Sbjct: 293 EDFAFERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQMLITATE--IPPGLADAGAL 350

Query: 365 ---MRISNHQA 372
                + + Q 
Sbjct: 351 LHRFHVEHGQV 361


>gi|114326984|ref|YP_744141.1| recombination protein F [Granulibacter bethesdensis CGDNIH1]
 gi|114315158|gb|ABI61218.1| DNA replication and repair protein recF [Granulibacter bethesdensis
           CGDNIH1]
          Length = 373

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 117/355 (32%), Positives = 183/355 (51%), Gaps = 7/355 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            I+ L ++ FRNYA+L           VG NG GKTN+LEAIS LSPGRG R A    + 
Sbjct: 7   HIRTLTLTRFRNYAALAWSPPPGLVGVVGPNGSGKTNLLEAISLLSPGRGLRNARTDQLA 66

Query: 66  RIGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           R G      ++  AR+    G  +++  +    +R  R ++I+  +IR   EL  H+   
Sbjct: 67  RQGEGGDGSWAVHARILSPTGPVELATGVLPGTER--RQVRIDGDIIRGQAELGAHITTV 124

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P MDR+F      RRRFLDR+V+ ++P H R +      +  R RLL     D +W 
Sbjct: 125 WLTPQMDRLFQEGPAGRRRFLDRLVYGLEPAHAREVAAQAASLTERARLLA-MRADPAWL 183

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFCA 242
           +++E  +A     +  +R+  +  L+ ++++      FP  +L L   +  +  +     
Sbjct: 184 AAVEDSIARHATAVTASRLAYVTRLNDVLVQ-GGAGGFPPARLDLNCAIATRLSRHPAVE 242

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++     L D R+ D  S    IG HRSDL++       + +  STG+QK +L+G+ L 
Sbjct: 243 VEDWLRAALRDSRETDGESGTQGIGAHRSDLLMKDAATGRSASIASTGQQKALLIGVTLG 302

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           HA L+    G AP++LLDE   HLD ++R  L   +  +G Q F+T TD+  FD+
Sbjct: 303 HAVLLKAVRGRAPVMLLDEPMTHLDAERRRLLLTALRGLGGQGFLTATDRDAFDA 357


>gi|311745376|ref|ZP_07719161.1| RecF protein [Algoriphagus sp. PR1]
 gi|126577921|gb|EAZ82141.1| RecF protein [Algoriphagus sp. PR1]
          Length = 366

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/378 (22%), Positives = 162/378 (42%), Gaps = 22/378 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++ +F+N+   +LVF  Q    VG NG GKTNIL+ I +LS  +   ++S +  
Sbjct: 1   MHLKSLDLLQFKNHEKTQLVFSPQINCIVGLNGSGKTNILDGIHYLSLTKSAVQSSDSLN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  FF+     E      ++   +E    + +     N   +    E    L +  
Sbjct: 61  VLHD-KDFFAIKGHFEIESKPLEVRCTVELGKKKQIFQ---NGKALDKTSEHVGLLPLVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
           + P    +  G S  RR+F D ++  +D  +  ++I +   ++ RN LL +    G  D 
Sbjct: 117 IAPDDTDLIRGGSDGRRKFFDGLLSQLDRNYLNQLIRYHHFLKQRNALLKKFAETGRRDL 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +   S + +M  L   I   R E++  ++ ++  +    +    K+++            
Sbjct: 177 TLLGSYDEEMIILSKAIATRRAELLEEVAPMLQSHYAAISQGQEKVTIVY--------ET 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            AL+E+++      RK D +++ +  G H+ D      D  I    GS G+QK  ++ + 
Sbjct: 229 EALREDFSNYFSSLRKKDFITKNSNAGIHKDDYSFLIGDHPIR-KIGSQGQQKSFIISLK 287

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS----VF 355
           LA  ++  N  G  P+LLLD+I   LD+ +   + +++      QIF+T         + 
Sbjct: 288 LAQFQIFENAKGEKPLLLLDDIFDKLDDTRIAQMMQLISQHTFGQIFLTDARPERSQKIL 347

Query: 356 DSLNETAKFMRISNHQAL 373
             L+    F  +     +
Sbjct: 348 SQLDSEVFFFELEKGNVI 365


>gi|310777808|ref|YP_003966141.1| DNA replication and repair protein RecF [Ilyobacter polytropus DSM
           2926]
 gi|309747131|gb|ADO81793.1| DNA replication and repair protein RecF [Ilyobacter polytropus DSM
           2926]
          Length = 376

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 161/370 (43%), Gaps = 14/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  +N   FRN     L F ++  +F+G NG GKT+ILEA+ F + G+ FR     ++
Sbjct: 1   MQISEINYVNFRNLKDNNLKFSSKFNLFLGKNGQGKTSILEAVYFSATGKSFRTPRQNEI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S     +F   E       +S+KL     +  +    N   ++  D+ +  L I  
Sbjct: 61  INH-SRERTGSFVVFEDSISKKTLSVKL----GKGKKEYSYNKKRVK-YDDFHGKLNIVS 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +   +  + + + ++ +L++ RN+ L E   +     
Sbjct: 115 FIPEDISLLTGAPGVRRSFFDYEISQANKEYYQDLKNYTKLLKFRNKYLKEKKHNDPMFD 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCA 242
             + +  + G +I   R++ +  +S L+    +K       ++L  + FL          
Sbjct: 175 IYQNEFIKFGARIIKKRLDYVRNISILLNLNYRKLFDDKKELRLKYSCFLGELKKVETAQ 234

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++   +K+      +     +L+GP + D I    DK    ++ S GE+K ++  I L+
Sbjct: 235 IEKLIQEKINQVFWQEKRYGFSLVGPQKDDFIFLLNDKEAK-SYASQGEKKSIVFSIKLS 293

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I      +PI ++D+IS++ D  ++ ++ +       Q+F++ T       LN  +
Sbjct: 294 EIDMIIKEKKESPIFIIDDISSYFDSLRKESIIKYFKKRDIQLFISSTT-----DLNMAS 348

Query: 363 KFMRISNHQA 372
           K   I     
Sbjct: 349 KNFYIEKGDI 358


>gi|162147557|ref|YP_001602018.1| recombination protein F [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786134|emb|CAP55716.1| putative DNA replication and repair protein recF [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 373

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 133/367 (36%), Positives = 192/367 (52%), Gaps = 5/367 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L +++FRNY  L    +A  T+  G+NG GKTN+LEA+S L PGRG R A  A++ 
Sbjct: 3   RLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEALSLLVPGRGLRGARSAEMA 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISW 124
           R G+ + +   AR  G +G A   I   +   R   R  + +   +R    L  HL   W
Sbjct: 63  RHGT-TIWGVAARFTGPDG-APFDIATGSDPARPERRVFRRDGETLRSRAALADHLSAVW 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P MDR+F      RRRFLDR+V A++P H R +   ++ M  RNRLL  G  D  W S
Sbjct: 121 LTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQAMGQRNRLLAAGRADPGWLS 180

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFCAL 243
           ++E  MA   V  + AR+ ++  L+      V  + FP  +L +    +    D+   A+
Sbjct: 181 ALEDSMARHAVAASAARLALVTQLNGEAAHTV-PDGFPPARLDILCPIVQQLRDRPALAV 239

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++    +L  GR  DS      IG HR+D+ +         A  STG+QK +L+G+ LAH
Sbjct: 240 EDWLRGRLAAGRACDSARGGAGIGAHRADMALSDQASGRPAAQASTGQQKALLLGVVLAH 299

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           A L++ + G AP++LLDE   HLDE +R ALFR V    + + MTGTD   F  L   A 
Sbjct: 300 AALMTRSRGEAPMILLDEPLVHLDEARRAALFRSVGAFDATVLMTGTDADQFAPLRGRAG 359

Query: 364 FMRISNH 370
           F+   N 
Sbjct: 360 FVSPRNG 366


>gi|227500983|ref|ZP_03931032.1| possible recombination protein F [Anaerococcus tetradius ATCC
           35098]
 gi|227216756|gb|EEI82154.1| possible recombination protein F [Anaerococcus tetradius ATCC
           35098]
          Length = 359

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 161/370 (43%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L ++ FRNY    + F+    IF+GDN  GKTN+LE++ +L+  R F++    D+
Sbjct: 1   MWIKDLKLNNFRNYFYESVEFNKDTNIFIGDNAQGKTNLLESVYYLANARSFKKIRDKDI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S S       V       ++ I++  +D    + + +N V      +L    +I  
Sbjct: 61  VRF-SQSQMKLAGTVRKGRSFKEVLIEVNDKD----KSIFVNGVKYDRSKDLKSLFKIVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182
             P    I       RR  +D+++  ID  ++    D+++++  RN+LL           
Sbjct: 116 FTPEDLAIIKDGPNLRRDLIDKIIEGIDLSYKSYKRDYDKILYQRNKLLKNTKSQYFKEQ 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            ++ +  +++LG +I  +R++ I  +     ++         +L L+   D         
Sbjct: 176 LAAFDKSLSKLGYRIYKSRLKFIKIIDQYARDFHSSLTSSKEELRLSYLADIS-----PK 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             EEY +     R  D     +  G HR D+ +    K  T    S G+Q+  ++ I LA
Sbjct: 231 DLEEYEEIFATSRDKDLKYLTSQRGIHRDDIEITINGKD-TKNFASQGQQRSAILNIRLA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
             +LI   TG   ++L D++ + LDE +   L   +   G Q  +T T+    + +++  
Sbjct: 290 EVKLIKEVTGDEAVILFDDVFSELDEKRSVFLLENLN--GYQTIITATNTKSLEYIDKD- 346

Query: 363 KFMRISNHQA 372
           K   I + + 
Sbjct: 347 KISYIFDGKI 356


>gi|319949429|ref|ZP_08023490.1| recombination protein F [Dietzia cinnamea P4]
 gi|319436891|gb|EFV91950.1| recombination protein F [Dietzia cinnamea P4]
          Length = 410

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 156/375 (41%), Gaps = 26/375 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++  L L  +   T  +G NG GKTN+LEAI  L+  R  R A  A +
Sbjct: 1   MHLRHLRLLDFRSWPLLELDLEPGVTTLIGRNGHGKTNVLEAIGVLASLRSHRVAGDAPM 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R G+  +     A   G E    ++++L     ++ R  ++N    R + ++   ++  
Sbjct: 61  IRTGAGTALVGALAHNAGRE----LTVELALNSGKANRA-RLNTSPCRRLSDILGVVQSV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EG 176
              P    +  G   ERRR LD ++    P     + ++  ++R R  LL         G
Sbjct: 116 LFAPEDLALVRGEPAERRRLLDELMVQRRPSLGGDLAEYSSVLRQRTALLKSASGALRRG 175

Query: 177 YFDSS-----WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLT 229
             + S          + ++AELG ++   R++++  L  L+++  +          L+  
Sbjct: 176 RPEESAAVLDTLDVWDGRLAELGARLVAGRIDLLRQLRPLVVDAYRGLAPESRPAGLAYR 235

Query: 230 GFLDGKFDQSFCALKE----EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
             +    D+S     E        +L   R+ +     +L+GPHR DL++   D+     
Sbjct: 236 FRVADTPDESELTDPELVEAVLLAELGRRRRDEIDRGMSLVGPHRDDLLLTLGDEPAK-G 294

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
             S GE     + + L    L     G  P+LLLD++ A LD  +R AL  +   +   +
Sbjct: 295 FASHGETWSFALALRLGSLELF-RADGAEPVLLLDDVFAELDRHRRAALADVAAGVEQVL 353

Query: 346 FMTGTDKSVFDSLNE 360
                 + V   L  
Sbjct: 354 ITAAVGEDVPAGLRG 368


>gi|313159177|gb|EFR58550.1| DNA replication and repair protein RecF [Alistipes sp. HGB5]
          Length = 448

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 154/373 (41%), Gaps = 18/373 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  F+N     L         VGDNG GKTN+++A+ +LS  +     +    
Sbjct: 1   MFLKKISLLNFKNIEQAELALCRGVNCLVGDNGAGKTNVIDAVYYLSMCKSSLPMTDGQS 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+  F +    +       +I         +  + L+ N      + +    +    
Sbjct: 61  IRHGADFFLAEGQYLTDGGKSENIVCSFS---RKGGKVLKRNGKEYERLSDHVGLVPAVI 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P+   + S  S ERRR+L+  +  +D  +   ++ +  ++  RNRLL     D +   
Sbjct: 118 VSPADSALISDASDERRRYLNAFISQLDRSYLTAVMRYNAVLAERNRLLKNM-PDETMLQ 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+ E G +I+  R E    L  +  EY +  +    ++ L    +           
Sbjct: 177 IYDMQLVEQGERIHARRREFAERLQPVAAEYYRILSGDREQVELHYKSELNDRP------ 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             + + L   R+ D  +  T  G HR DL++      +   +GS G+QK  L+ + LA  
Sbjct: 231 --FGEILLAARQKDLANEFTTSGIHRDDLVLRIGGYPLR-KYGSQGQQKSFLIALKLAQY 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-DIGSQIFMTGTDKSVFDSLNETA- 362
            +++   G  PILLLD++   LD  +   L R+V+ D   QI +T  + +    + + A 
Sbjct: 288 TIVAQEKGEKPILLLDDLFDKLDAGRVEQLIRLVSEDSFGQIVITDCNPTRLRRILDKAG 347

Query: 363 ---KFMRISNHQA 372
                  + N   
Sbjct: 348 GAYSLFTVENGGI 360


>gi|296115231|ref|ZP_06833872.1| recombination protein F [Gluconacetobacter hansenii ATCC 23769]
 gi|295978332|gb|EFG85069.1| recombination protein F [Gluconacetobacter hansenii ATCC 23769]
          Length = 374

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 127/372 (34%), Positives = 193/372 (51%), Gaps = 7/372 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            +  L +++FRNY  L     +  T+ VG+NG GKTN+LE++S L PGRG R A  AD+ 
Sbjct: 3   HLSRLVLTDFRNYRHLSWTPTSPVTVIVGENGSGKTNLLESVSLLLPGRGLRGARVADLP 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNKHLRI 122
           R G    +   AR++  +G+      L    D +    R ++++   +R    ++  L  
Sbjct: 63  RHGGTR-WGIAARIDVPDGVEAGIRDLAVGSDPARPDRRVVRLDGEALRNRTRVSDFLSA 121

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P MDR+F   +  RRRFLDR+V A++P H R +   +  M  RNRLL  G  D +W
Sbjct: 122 VWLTPQMDRLFQEGAAGRRRFLDRLVLAMEPGHARELAAHDHAMMQRNRLLLSGGGDGAW 181

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFC 241
            S++E  MA  GV    AR  ++  L+         + FP   L+L   +          
Sbjct: 182 LSALEDAMARHGVAATAARAGLVALLNGDDAALC--DGFPATALTLESEIAQHLRHMPAL 239

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+++   ++L   R+ D       +G HR+DL +         A  STG+QK +LVG+ L
Sbjct: 240 AVEDWLREQLAASRQRDRARGSAFLGAHRTDLHMHDRATRRGAAQSSTGQQKAMLVGVVL 299

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           +HARLI+   G AP++LLDE   HLDE +RNALFR +  + + + ++GTD + F  L + 
Sbjct: 300 SHARLIARARGQAPLILLDEPLVHLDEVRRNALFRAIGRLDTTVMLSGTDAAQFGPLRDQ 359

Query: 362 AKFMRISNHQAL 373
           A F+       L
Sbjct: 360 AAFVMPREGALL 371


>gi|294085123|ref|YP_003551883.1| RecF protein [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664698|gb|ADE39799.1| RecF protein [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 418

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 132/370 (35%), Positives = 200/370 (54%), Gaps = 6/370 (1%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
            ++ +  L ++ FRNY ++RL F     + VG NG GKTN+LEAIS LSPG+G RRA  A
Sbjct: 34  PQLWLSGLLLNNFRNYETVRLEFGQAPVVLVGANGAGKTNLLEAISLLSPGKGMRRAKTA 93

Query: 63  DVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            + RIG+    +S  A +E  +G+  I   +        R ++   + +   D +   L 
Sbjct: 94  HLARIGAAMPDWSVSAALETEDGVMQIGTGVPADSQTGRRIMRREGMTVSQAD-IATQLS 152

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           +SWL P MD +F      RRRFLDR+V A D  H  R   +E+LMR R  L++EG  D+ 
Sbjct: 153 VSWLTPQMDGVFIDSPGARRRFLDRLVIAFDAAHIGRTNRYEKLMRERTLLISEGRGDAG 212

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           W +++EA +AE  + I  AR  +I+ L+           FP ++L L G ++   D+   
Sbjct: 213 WFNALEASLAETAIAITAARRALIHDLNEEARHGWH--GFPGVRLELQGDIENWLDEMPA 270

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
              E+         + D  S   L GPH S++              STG+QK +L+ + L
Sbjct: 271 LAVEDRHMAAAANLRTDGTS--ALPGPHASEVNAYDVAGDTPAYLASTGQQKALLIAVVL 328

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           AHARL     G  PI+LLD+++AHLD  +R+ALF  + D+G Q + +G+D S+FD L + 
Sbjct: 329 AHARLQERRLGRPPIMLLDDVAAHLDAKRRSALFEALFDLGGQSWFSGSDASLFDGLGKA 388

Query: 362 AKFMRISNHQ 371
           A+FM+I + +
Sbjct: 389 AQFMKIHDAE 398


>gi|260904979|ref|ZP_05913301.1| recombination protein F [Brevibacterium linens BL2]
          Length = 374

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 158/372 (42%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L++  +R+Y  L L F+   T FV DNG GKTNI+EAI +L+  R  R A  A +
Sbjct: 1   MWISRLSLRNYRSYPELDLEFEPGVTTFVADNGTGKTNIVEAIGYLAHLRSHRVAFDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               + +  +  A V   +  A + + ++++     R   +N   ++ + E+   +    
Sbjct: 61  VNESAQTA-TVSALVNRDQRHATVEVSIQSKGANRAR---VNRSPVK-MKEILGLVSCVV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179
             P    +  G   ERR ++D +V + +PR+   + DFER ++ RN LL     D     
Sbjct: 116 FAPEDLSLVRGEPAERRSWMDTLVVSRNPRYSSVITDFERALKQRNALLKRLREDRDPGL 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH------IKLSLTGFLD 233
            +         A+   ++   R  ++  +   + +               I+      +D
Sbjct: 176 EATLDIWNMAYADSASELVYGRQRILADIVEPLQKNFAYIAADARLERQGIQARYDSRID 235

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
               +S    +E     L   R  +     TL GP R DL +   D      + S GE  
Sbjct: 236 YSQAESAAECRELLLAALERRRTTEIERGLTLHGPGRDDLALTIGDHPAK-GYASHGETW 294

Query: 294 VVLVGIFLAHARLISNTTG---FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349
            + + + LA   L+S+  G     P+L+LD++ A LD  +RN L   +T+   Q+F+T  
Sbjct: 295 SLALAMQLAGWDLLSSDAGSAAEQPVLVLDDVFAELDTGRRNRLASRITEAE-QVFITAA 353

Query: 350 TDKSVFDSLNET 361
            D  + + L   
Sbjct: 354 VDGDLPEGLEGR 365


>gi|326793325|ref|YP_004311145.1| DNA replication and repair protein recF [Marinomonas mediterranea
           MMB-1]
 gi|326544089|gb|ADZ89309.1| DNA replication and repair protein recF [Marinomonas mediterranea
           MMB-1]
          Length = 366

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 160/370 (43%), Gaps = 17/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I++ RN   ++     Q  + VG+NG GKT++LEAI  LS GR FR   +   
Sbjct: 1   MPLARLDIAKLRNLTKIQFEPSHQVNVIVGENGSGKTSVLEAIHLLSYGRSFRSHKHKTY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +         FA+++    +  I +K   R       +++    +  + EL + L +  
Sbjct: 61  IQHDQAECI-VFAQLKASTSVFPIGLK---RARDGAIDVRVQGEKVHSIVELAERLPVQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P   R+  G    RR+F+D   F  D +      D+++ ++ RN LL  G    +  +
Sbjct: 117 INPDAFRLLEGSPKIRRQFVDWGAFHFDVQFMPAWRDWQKALKQRNSLLKRGKISPNLLA 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++  LG  +N  R   +  L       +   +   + +SL         ++     
Sbjct: 177 AFDQELIRLGGTVNEVRQAYVKHLIPYFKTVLNALS-DELDVSLNFTQGWDAQKT----- 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A+ L  G   D     T  GP R+DL V            S G+QK+V+  + +A  
Sbjct: 231 --LAEALESGVNRDIELGYTHSGPQRADLRVKTKAGDALDTL-SRGQQKLVVSALKIAQG 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA-- 362
           +++++  G   + L+D++ A LD + R  L R++  + SQIF+T       D +   A  
Sbjct: 288 QVLTDM-GRPLVFLVDDLPAELDANHRQKLCRLLESLNSQIFITSVGSDSLDFVWSDATD 346

Query: 363 -KFMRISNHQ 371
            +   + N +
Sbjct: 347 VRHFAMRNGE 356


>gi|332706260|ref|ZP_08426328.1| DNA replication and repair protein RecF [Lyngbya majuscula 3L]
 gi|332354965|gb|EGJ34437.1| DNA replication and repair protein RecF [Lyngbya majuscula 3L]
          Length = 383

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/384 (24%), Positives = 175/384 (45%), Gaps = 22/384 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++ +FRNY    + FDA  TI +G+N  GK+N+LEA+  LS  +  R     ++
Sbjct: 1   MYLKSLHLRQFRNYRDCLVNFDAPKTILLGNNAQGKSNLLEAVELLSTLKSHRSVRDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             + +       A +E   G  ++ + L T+     R + +N   +R   +    L    
Sbjct: 61  V-LETTPIAEIRATLERTYGSVELGLTLRTQGR---RTVALNQESLRRQLDFLGILNAVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGY 177
                  +  G    RR +LD ++  ++P +   +  + +++R RN LL        EG 
Sbjct: 117 FSSLDLELVRGAPERRRAWLDSILTQLEPIYAYILQQYNQVLRQRNALLKKIRKLQQEGE 176

Query: 178 FDSS-------WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
            D+S            +AQ+A  G ++   R  M+  L+ L   +    +     L +T 
Sbjct: 177 VDASVSKQYNAELGLWDAQLATAGSRVTRRRERMLKRLAPLAQAWHASISGKTEVLDITY 236

Query: 231 FLDGKFDQSFCAL-KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
             +    +    L K+ + +K+      +    RTL+GPHR ++     ++    ++GS 
Sbjct: 237 APNVSLSKDDPDLVKQAFLEKIQQYSLPEFHQGRTLVGPHRDEVQFTI-NQTPAKSYGSQ 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q+ +++ + LA  +LI    G AP+LLLD++ A LD +++N L   + D   Q  +T 
Sbjct: 296 GQQRTLVLALKLAELKLIEEVVGEAPLLLLDDVLAELDLNRQNLLLDAIQD-RFQTLITT 354

Query: 350 TDKSVFDS-LNETAKFMRISNHQA 372
           T    FDS    +++ + +   Q 
Sbjct: 355 THLGAFDSQWLNSSQILSVQAGQI 378


>gi|227485760|ref|ZP_03916076.1| possible recombination protein F [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236315|gb|EEI86330.1| possible recombination protein F [Anaerococcus lactolyticus ATCC
           51172]
          Length = 367

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 160/370 (43%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  FRNY    + F+    IF+GDN  GKTN+LE+  +L+    F++    D+
Sbjct: 1   MWIQDIKLYNFRNYFYESVNFNESTNIFIGDNAQGKTNLLESCYYLANATSFKKLRDKDI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G          + G         K+  R D + + + +N+V  +   +L    R+  
Sbjct: 61  IKFGQEKM-----EISGTIRKGRSFKKVLIRVDGTDKNIFVNEVEYKRNKDLKSLFRLVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182
             P    I       RR  LD ++ +ID  + R   D+++++  RN+LL           
Sbjct: 116 FTPEDLNIIKEGPNLRRELLDEIIASIDFSYARVKKDYDKILFARNKLLKNRNSSYFKEQ 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             + +  + + G KI  +R++ +  +     ++         KL +    D         
Sbjct: 176 LDAFDKSLVKEGYKIYKSRIKFVKFVEEYAQDFQNALTDGKEKLEIDYLPDIS-----AE 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             +EY KK  + R+ D     T  G HR D+I+    K  T    S G+Q+  ++ I LA
Sbjct: 231 SLDEYYKKFLEKREDDLRYLSTQAGVHRDDIIIKINGKN-TRLFASQGQQRSAIINIKLA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
             +L+   +G   ++LLD++ + LDE +   L   ++D   Q  +T T+    +++    
Sbjct: 290 EVKLVRQISGDRAVILLDDVFSELDETRSKFLLENLSDY--QTIITATNTKSLENVPAD- 346

Query: 363 KFMRISNHQA 372
           K   IS+ + 
Sbjct: 347 KISYISDGRI 356


>gi|89256653|ref|YP_514015.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica LVS]
 gi|115315066|ref|YP_763789.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. holarctica OSU18]
 gi|156502796|ref|YP_001428861.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167010539|ref|ZP_02275470.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254367965|ref|ZP_04983985.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica 257]
 gi|254369521|ref|ZP_04985532.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica FSC022]
 gi|290953408|ref|ZP_06558029.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295313369|ref|ZP_06803978.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica URFT1]
 gi|122324928|sp|Q0BL82|RECF_FRATO RecName: Full=DNA replication and repair protein recF
 gi|122500520|sp|Q2A2N7|RECF_FRATH RecName: Full=DNA replication and repair protein recF
 gi|259563657|sp|A7ND52|RECF_FRATF RecName: Full=DNA replication and repair protein recF
 gi|89144484|emb|CAJ79791.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica LVS]
 gi|115129965|gb|ABI83152.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134253775|gb|EBA52869.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica 257]
 gi|156253399|gb|ABU61905.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|157122475|gb|EDO66610.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 349

 Score =  271 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/361 (24%), Positives = 160/361 (44%), Gaps = 15/361 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN  +    F       VG NG GKT+ILE+I FLS  R FR +    +
Sbjct: 1   MYISNLRLQNFRNIPAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F              +I+I L  R   S    ++N  + +   E+ ++L I  
Sbjct: 61  INHNADEFII----YTKAYNPDEITISLS-RKKNSNNISKLNLEIQKNHTEITRNLPIQL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    I +  + +R + +D   F +D    +     + L++ RN  L + Y   S+  
Sbjct: 116 INPESFNIINSGAQQRCKVIDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNYP-YSYIL 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           SI+ ++ E    ++  R      L   I E +   N P+++L +  F      +S     
Sbjct: 175 SIDKKLCEFAEILDYKRQAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKS----- 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A+ L +    D+  + T  GPH++D+++    K I     S G+QK+++  + LA  
Sbjct: 229 --LAQVLEESFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQG 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            + ++      I L+D+I++ LD      LF  +  + SQ+F+T T+K+  +   +T  +
Sbjct: 286 EIHNSENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSY 345

Query: 365 M 365
           +
Sbjct: 346 I 346


>gi|325954682|ref|YP_004238342.1| DNA replication and repair protein recF [Weeksella virosa DSM
           16922]
 gi|323437300|gb|ADX67764.1| DNA replication and repair protein recF [Weeksella virosa DSM
           16922]
          Length = 359

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 156/375 (41%), Gaps = 28/375 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L   +F+N+      F  +    VG NG+GKTN+L+AI +L+  + +   S A  
Sbjct: 1   MYLRLLKARQFKNFTESDFEFSPKINAIVGPNGLGKTNLLDAIHYLALSKSYLNHSDAMN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            +     F      +EG      +  K+     +   + L+ N      + +      + 
Sbjct: 61  IQFDKDYFL-----LEGEFYRNHVDEKISCLVRKGQSKQLKRNSKQYDRLSDHIGQFPVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179
            + P    + +  S  RR+FLD ++   D  + + ++ + +++  RN LL        FD
Sbjct: 116 MISPYDSDLINEGSEVRRKFLDNIISQSDKAYLQHLLRYNKVLSQRNALLKYFAANQTFD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFD 237
           +      + ++ ELG KI   R   +   + +   Y    +     +K+     L+    
Sbjct: 176 ADTLGIYDKELIELGEKIFAKRKTFVEIFAKVFKSYYSSISEQREPVKIEYISQLN---- 231

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                 +  +   L +    D  ++ +  G H+ DL        +    GS G+QK  L+
Sbjct: 232 ------EHSFDTLLQNHLPKDRFAQHSTAGIHKDDLAFTIFHHPVK-KFGSQGQQKSYLI 284

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----K 352
            + LA   +I       PILLLD+I   LDE +   L R+V +    QIF+T T     +
Sbjct: 285 ALKLAQLEVIKQVLNLTPILLLDDIFDKLDEQRVTQLIRLVNEARFGQIFVTDTHPGRTE 344

Query: 353 SVFDSLNETAKFMRI 367
            +   +NE +K +RI
Sbjct: 345 EIVKRINEESKIIRI 359


>gi|88798537|ref|ZP_01114121.1| recombination protein F [Reinekea sp. MED297]
 gi|88778637|gb|EAR09828.1| recombination protein F [Reinekea sp. MED297]
          Length = 364

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/374 (20%), Positives = 148/374 (39%), Gaps = 21/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+    RN AS RL       +F GDNG GKT++LEAI  L+  R F+ A    V
Sbjct: 1   MAVLTLSFQGIRNLASARLNLSPGVNVFYGDNGAGKTSVLEAIHLLAMARSFKLARTRTV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                     T    +G    + + +    R  +    +++N   +  + +L   + +  
Sbjct: 61  VSHELEELLVTGELGDG----SRLGV---RRTQKGQVQIRLNGESLASLAQLVHLMPVQL 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +      +  G   +RR+FLD  VF             ++ ++ RN LL  G  + S  +
Sbjct: 114 IHSDSFALLEGSPGDRRQFLDWGVFHQTVAFHEDWQRLQKSLKNRNSLLRSGRIERSQLA 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLDGKFDQSFCAL 243
             E +  E   +I+  R + +        + + Q  + P +++      D          
Sbjct: 174 VWEREYIEAAERIDGYRKQYLEGFVPCFHDVLNQLVSLPELRIHYYRGWD---------R 224

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++   + L   R  D     T  GP R+D+ +   +K       S G+QK+V+  + +A 
Sbjct: 225 QKPLNEVLEQQRDRDMKLGYTQSGPQRADMRIKV-NKVNAADELSRGQQKLVVCALKIAQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL---NE 360
           +  +        + L+D++ A LD      L  ++  + SQ+FMT  D +   +     +
Sbjct: 284 SLYLQRQQNQPTVFLIDDLPAELDHHHIQRLGALMETLQSQVFMTCVDPAPLKTFWKHPD 343

Query: 361 TAKFMRISNHQALC 374
             +   + + +   
Sbjct: 344 QVRMFHVEHGEIGS 357


>gi|313792565|gb|EFS40651.1| recombination protein F [Propionibacterium acnes HL110PA1]
 gi|313803566|gb|EFS44748.1| recombination protein F [Propionibacterium acnes HL110PA2]
 gi|313839625|gb|EFS77339.1| recombination protein F [Propionibacterium acnes HL086PA1]
 gi|314963870|gb|EFT07970.1| recombination protein F [Propionibacterium acnes HL082PA1]
 gi|315078996|gb|EFT51008.1| recombination protein F [Propionibacterium acnes HL053PA2]
 gi|327457411|gb|EGF04066.1| recombination protein F [Propionibacterium acnes HL092PA1]
          Length = 401

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 164/392 (41%), Gaps = 27/392 (6%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  TIF+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVRADVPMAAGATIFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL          
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGF 231
           G    +     + ++A +G ++  AR++ ++A+  L     ++     +        T  
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTID 245

Query: 232 LDGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           L+G +                L   +   L   R  + +   TL+GP R D+I+   +  
Sbjct: 246 LEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 305

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V   
Sbjct: 306 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 363

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             Q+ +T    S    +    +   +   Q L
Sbjct: 364 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393


>gi|300742654|ref|ZP_07072675.1| RecF protein [Rothia dentocariosa M567]
 gi|300381839|gb|EFJ78401.1| RecF protein [Rothia dentocariosa M567]
          Length = 403

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 98/392 (25%), Positives = 164/392 (41%), Gaps = 30/392 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ ++R Y  L L   A  T+F+G NGVGKTNI+EAI + +     R +    +
Sbjct: 1   MYLDHLSLLDYRTYPLLNLPLSAGVTVFLGPNGVGKTNIIEAIDYTANLSSHRVSHDGPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+      + RV  + G      + E     S R ++IN        E     R   
Sbjct: 61  VRVGAS---RAYIRVRTVRGSQQTVTEFEIAPGASNR-VRINRAAPVRAREALGITRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
             P   ++  G    RRRF+D +  ++ P       ++ER++R RN LL       S   
Sbjct: 117 FSPEDLQLVKGEPAGRRRFIDDLAVSLRPVVAGYRQEYERILRQRNSLLKTLQRRGSLAA 176

Query: 183 --------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---- 230
                         Q+A+LG ++  AR  ++  L   +             +S T     
Sbjct: 177 DDENAMHTLDVWSEQLAQLGAQLLAARFRVLWLLLPHLRRAYAGLTDGSKDISFTYDSTV 236

Query: 231 -------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
                   L+     S   +K+  A++L + R  +     TL+GPHR D+ +     A+ 
Sbjct: 237 FPEITERGLEHVSRMSIDDIKDAMAQRLRERRAAELERGVTLVGPHRDDITLLLGGLAVK 296

Query: 284 IAHGSTGEQKVVLVGIFLAH---ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
               S GE   V + + LA     R   ++ G +PIL+LD++ A LD ++R+ L  +V  
Sbjct: 297 -QFASHGESWSVALSLRLASWFVHRADDDSPGSSPILILDDVFAELDSERRHRLGALVAQ 355

Query: 341 IGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
              Q+ +T    S       T + +R+S   A
Sbjct: 356 AE-QVLLTSAVLSDIPEELGTYRLVRVSAAHA 386


>gi|262377661|ref|ZP_06070881.1| recombinational DNA repair ATPase [Acinetobacter lwoffii SH145]
 gi|262307420|gb|EEY88563.1| recombinational DNA repair ATPase [Acinetobacter lwoffii SH145]
          Length = 359

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/376 (21%), Positives = 156/376 (41%), Gaps = 23/376 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L+I   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     + 
Sbjct: 1   MHITRLHIERVRNLKTVALHGLQPFNVFYGQNGSGKTSILEAIHLLAAGRSFRTHIPKNY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+                  I ++     ++    +++N  ++    +L K L +  
Sbjct: 61  IQHGAQDAIVFA-----QSATEKIGMQKMASGEQ---LIKVNGDLVATQGQLAKLLPLQL 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-DSSWC 183
           + P    I    +  RR+ LD ++F ++P        + R ++ RN LL    F   S  
Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYHAWQYYSRALKQRNSLLKSKRFLSLSDV 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 ++E G  ++  RV ++        + + K+  P +++SL        +      
Sbjct: 173 EPWNQMLSEYGEILHSQRVGIVEQWKPFFEDDL-KQLLPELQVSLEYSPGFHSETG---- 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L +  + D   R T  GPHR+DL +            S G++K++++ + L+ 
Sbjct: 228 ---LLNDLTNQHEKDCERRYTEYGPHRADLRLK-TPMGDADVILSRGQKKLLMIALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS----VFDSLN 359
             ++  +     ++LLD+++A LD   +  L   ++ +GSQ+F+T  D          L+
Sbjct: 284 IAMLH-SCNKETVVLLDDVTAELDLTAQQRLIERLSQLGSQVFITTLDHESVQKHLHDLS 342

Query: 360 ETAKFMRISNHQALCI 375
            + +   + N     +
Sbjct: 343 ISYQLFSVENGTVQVV 358


>gi|260891933|ref|YP_003238030.1| DNA replication and repair protein RecF [Ammonifex degensii KC4]
 gi|260864074|gb|ACX51180.1| DNA replication and repair protein RecF [Ammonifex degensii KC4]
          Length = 358

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 148/367 (40%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +  FRNY  L     +   +  G N  GKTN+LEA+ F+  GR FR     ++
Sbjct: 1   MWIRSLFLRNFRNYCELEWEPSSGINLLKGPNAAGKTNLLEALYFVLCGRSFRTLREEEI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G      T   ++G    A   I+ E R  +  + L          D   + + +  
Sbjct: 61  VRTGE-----TTTLIKGKIATAWGEIETEVRFKKGTKLLFYQGKPASRRDFPGEKV-VLL 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + +G   ERR F +R++  + P +   +  ++R +  RN LL           
Sbjct: 115 FRPEDLLVVTGTPAERRGFFNRVLAKLVPGYEEVLTRYQRALEQRNALLRLPEKKGEELE 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
                +   G  +   RVE +  +  L     ++      KL L    +         L 
Sbjct: 175 IWTEALVSAGALLYRLRVEGLGLIGPLTSSLYRELVGK--KLVLRYATNAVSPAKEKPLA 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E++A+ L    + + +  +TL+GPHR D +     + +    GS GE +  ++ + LA A
Sbjct: 233 EQFAEALSALAEKEKVLGQTLVGPHRDDFLFIVEGEDLRYK-GSRGEVRAAVLALKLAEA 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           +L+   TG   I  LD++ +  D  +R AL   + +   Q F+T  +      L    + 
Sbjct: 292 KLLEKMTGERTIFFLDDVFSEFDPQRRRALALYLEER--QSFVTSAEPE----LKLPGRT 345

Query: 365 MRISNHQ 371
             I   +
Sbjct: 346 FLIEQGR 352


>gi|254818681|ref|ZP_05223682.1| recombination protein F [Mycobacterium intracellulare ATCC 13950]
          Length = 385

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 87/361 (24%), Positives = 149/361 (41%), Gaps = 22/361 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A   L      T+F+G NG GKTN+LEA+ + S     R  + A +
Sbjct: 1   MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       + ++ LE    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGAARAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P    +  G   ERRR+LD +     P       D+E+++R R  LL           
Sbjct: 117 FAPEDLALVRGDPSERRRYLDDLATLRRPAVAAVRADYEKVLRQRTALLKSLSGARYRGD 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234
           +         ++++AE G ++  AR+++ N L+  + +  Q          +S    L  
Sbjct: 177 HSALDTLDVWDSRLAEHGAELMSARIDLANQLTPEVEKAYQLLAPGSRAASISYRSSLGA 236

Query: 235 KFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
                      E+        L + R  +      L+GPHR DL +   D+       S 
Sbjct: 237 DAAADIAGGDREFLEAALLAALAERRSAELERGMCLVGPHRDDLELWLGDQPAK-GFASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE     + + LA   L+       P+LLLD++ A LD  +R AL   V +   Q+ +T 
Sbjct: 296 GESWSFALALRLAAYELL-RADESDPVLLLDDVFAELDATRRRALA-TVAESAEQVLVTA 353

Query: 350 T 350
            
Sbjct: 354 A 354


>gi|88854502|ref|ZP_01129169.1| recombination protein F [marine actinobacterium PHSC20C1]
 gi|88816310|gb|EAR26165.1| recombination protein F [marine actinobacterium PHSC20C1]
          Length = 387

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 97/394 (24%), Positives = 163/394 (41%), Gaps = 35/394 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  +++ +FRNY  L L   +  T+ VG NG GKTN++EA+ FLS     R ++   +
Sbjct: 1   MLVTHVDLKDFRNYKGLTLELSSGPTLIVGSNGQGKTNLVEALGFLSTLGSHRVSTDHAM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ +      R+E  E      +++           QIN  VIR   EL ++     
Sbjct: 61  VRQGTDAAI-VRVRLEHNERKFLAEVQINRSGAN---RAQINRSVIRT-RELPRYFSSVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------F 178
             P    +  G    RRRF+D ++    PR    + D+ER+++ RN LL           
Sbjct: 116 FAPEDLALVRGEPSGRRRFIDDLLVLRSPRFSGVIADYERVVKQRNMLLKSARASGIRDA 175

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           + S     + ++ E G +I  AR  ++  LS  + +  ++        SL   L     Q
Sbjct: 176 NLSTLDVWDERLIEFGAEIISARSALVANLSPEVAKAYERIVGADHGASLANSLSIISRQ 235

Query: 239 ----------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
                           S       +   L   RK++     TL+GPHR DLI        
Sbjct: 236 DDAESAVATNDVGEIISVADATTAFTAALESVRKVERDRAITLVGPHRDDLIFGLNGLP- 294

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVTDI 341
              + S GE     + + LA A L+   +    P+L+LD++ A LD+ +R  L   + + 
Sbjct: 295 ARGYASHGESWSFALSLKLASAELLRRDSAAGDPVLILDDVFAELDKSRRERLADSIANF 354

Query: 342 GSQIFMTGTDKSVFDSLNET--AKFMRISNHQAL 373
             Q+ +T    +V   + E   A  + I   + +
Sbjct: 355 E-QVLITA---AVLGDVPERLVANVIHIQAGEVV 384


>gi|56707876|ref|YP_169772.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110670347|ref|YP_666904.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134301718|ref|YP_001121686.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|224456955|ref|ZP_03665428.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254370369|ref|ZP_04986374.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254874691|ref|ZP_05247401.1| recF, DNA replication and repair protein [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|81597652|sp|Q5NGS0|RECF_FRATT RecName: Full=DNA replication and repair protein recF
 gi|123359518|sp|Q14I72|RECF_FRAT1 RecName: Full=DNA replication and repair protein recF
 gi|259563660|sp|A4IXB4|RECF_FRATW RecName: Full=DNA replication and repair protein recF
 gi|56604368|emb|CAG45395.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320680|emb|CAL08778.1| DNA replication and repair protein recF [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134049495|gb|ABO46566.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|151568612|gb|EDN34266.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254840690|gb|EET19126.1| recF, DNA replication and repair protein [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159059|gb|ADA78450.1| DNA replication and repair protein RecF [Francisella tularensis
           subsp. tularensis NE061598]
 gi|328676814|gb|AEB27684.1| DNA recombination and repair protein RecF [Francisella cf. novicida
           Fx1]
          Length = 349

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/361 (24%), Positives = 160/361 (44%), Gaps = 15/361 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN  +    F       VG NG GKT+ILE+I FLS  R FR +    +
Sbjct: 1   MYISNLRLQNFRNIPAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F              +I+I L  R   S    ++N  + +   E+ ++L I  
Sbjct: 61  INHNADEFII----YTKAYNPDEITISLS-RKKNSNNISKLNLEIQKNHTEITRNLPIQL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    I +  + +R + LD   F +D    +     + L++ RN  L + Y   S+  
Sbjct: 116 INPESFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNYP-YSYIL 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           SI+ ++ E    ++  R      L   I E +   N P+++L +  F      +S     
Sbjct: 175 SIDKKLCEFAEILDYKRQAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKS----- 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A+ L +    D+  + T  GPH++D+++    K I     S G+QK+++  + LA  
Sbjct: 229 --LAQVLEESFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQG 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            + ++      I L+D+I++ LD      LF  +  + SQ+F+T T+K+  +   +T  +
Sbjct: 286 EIHNSENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSY 345

Query: 365 M 365
           +
Sbjct: 346 I 346


>gi|254302376|ref|ZP_04969734.1| recombination protein F [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322568|gb|EDK87818.1| recombination protein F [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 369

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 159/368 (43%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  +    FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++
Sbjct: 1   MKISNITYLNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F S+ +  +       IS++       + +    N   I   D   K + I  
Sbjct: 61  IKYNFDEFISSIS-YQDYIANNKISVRF-KNIAGAKKEFFFNKKRISQTDFYGK-INIIA 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   +
Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242
             E +  +    I   R+E + +LS ++    +K       + L     LD     +   
Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTAKVTVEM 237

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E   K++   +  +   + +LIGPH+ D           I+  S GE+K ++  + L+
Sbjct: 238 IQESLKKEILQKKYQEDRYKFSLIGPHKDDYKFLLNGHEAKIS-ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK     LN  A
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LNIEA 351

Query: 363 KFMRISNH 370
           K   +   
Sbjct: 352 KNFYVEKG 359


>gi|84497191|ref|ZP_00996013.1| recombination protein F [Janibacter sp. HTCC2649]
 gi|84382079|gb|EAP97961.1| recombination protein F [Janibacter sp. HTCC2649]
          Length = 398

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 96/402 (23%), Positives = 167/402 (41%), Gaps = 42/402 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y S  L  +   T FVG NG GKTN++EAI +L+     R A+ A +
Sbjct: 1   MYVRHLTVGDFRSYPSAELPLEPGITTFVGLNGQGKTNLVEAIGYLASLSSHRVANDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       A V       +  ++LE    R+ R  ++N   +    ++   +R   
Sbjct: 61  VRFGAAQAIIRGAVVRDG---RETLVELEITPGRANRA-RLNKSPLTRTRDVLGQVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174
             P    +  G   ERRRFLD ++ A  PR      D++R+++ RN LL           
Sbjct: 117 FAPEDLSLVKGDPSERRRFLDDLLVARQPRWAGARGDYDRILKQRNALLKSAAPVLRGRG 176

Query: 175 -------------EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
                        E            AQ+A++   +  AR+ ++  L+ L+ +   + + 
Sbjct: 177 KQRRPVEGVDTVSEREAALHTLDVWNAQLAQVAAPLLYARLRLLRDLAPLLGKAYDEVSA 236

Query: 222 PH--IKLSLTGFLDGKFD--------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
                ++S    L  +F              L  E      + R  +     TL+GPHR 
Sbjct: 237 GQSDARVSYKASLREEFAGRIAAGEVPELEELHAELLASFAEVRGQEIERGVTLVGPHRD 296

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           D+++   +      + S GE     +G+ LA   L+ +  G  P+L+LD++ A LD  +R
Sbjct: 297 DVVLTLGELPAK-GYASHGESWSFALGLKLAAYHLLRHDLGDDPVLILDDVFAELDAGRR 355

Query: 332 NALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372
             L  +V D   Q+ +T   +  V   L    +   +S  + 
Sbjct: 356 ERLAAMVADCE-QVLITAAVEADVPSEL--RGRTYAVSLGEV 394


>gi|315107495|gb|EFT79471.1| recombination protein F [Propionibacterium acnes HL030PA1]
          Length = 401

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 163/392 (41%), Gaps = 27/392 (6%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVEHLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL          
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGF 231
           G    +     + ++A +G ++  AR++ ++A+  L     ++     +        T  
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTID 245

Query: 232 LDGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           L+G +                L   +   L   R  + +   TL+GP R D+I+   +  
Sbjct: 246 LEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 305

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V   
Sbjct: 306 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 363

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             Q+ +T    S    +    +   +   Q L
Sbjct: 364 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393


>gi|260495358|ref|ZP_05815485.1| recombination protein F [Fusobacterium sp. 3_1_33]
 gi|260197136|gb|EEW94656.1| recombination protein F [Fusobacterium sp. 3_1_33]
          Length = 369

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 159/368 (43%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  +    FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++
Sbjct: 1   MKISNITYLNFRNLENSSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F S+ +  +       IS++       + +    N   I   D   K + I  
Sbjct: 61  IKYNFEEFISSIS-YQDYVANNKISVRF-KNITGAKKEFFFNKKRISQTDFYGK-INIIA 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   +
Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242
             E +  +    I   R+E + +LS ++    +K       + L     LD     +   
Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTAKVTVEM 237

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E   K++   +  +   + +L+GPH+ D           I+  S GE+K ++  + L+
Sbjct: 238 IQENLKKEISQKKYQEDKYKFSLVGPHKDDYKFLLNGYEAKIS-ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK     L+  A
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351

Query: 363 KFMRISNH 370
           K   +   
Sbjct: 352 KNFYVEKG 359


>gi|132249|sp|P13456|RECF_PSEPU RecName: Full=DNA replication and repair protein recF
 gi|45727|emb|CAA44365.1| recF protein [Pseudomonas putida]
          Length = 365

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 85/375 (22%), Positives = 157/375 (41%), Gaps = 21/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L+   +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            +    +  + F  V+  EG  +++ +  E + +     ++I+    R   +L + L + 
Sbjct: 61  IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGE---FTIRIDGQNARQA-QLAELLPLQ 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P   R+  G    RR+FLD  VF ++PR        ++ +R RN  L  G  D +  
Sbjct: 116 LINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFLPAWQRLQKALRQRNSWLRHGTLDPASQ 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           ++ + ++     +I+  R   I AL  +    +  E      L+L+ +     D+     
Sbjct: 176 AAWDRELCLRSAEIDEYRRNYIKALKPVFERTLS-ELVELDGLTLSYYRGWDKDR----- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF-LA 302
             E  + L      D     T  GP R+DL +            S G+QK+V  G+  +A
Sbjct: 230 --ELQEVLASSLLRDQQMGHTQAGPQRADLRLRLAGNNAADIL-SRGQQKLV--GMRIIA 284

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS---LN 359
              L+S       I L+D++ + LD+  R AL R++ ++  Q+F+T  D  +        
Sbjct: 285 QGHLVSQARRGHCIYLVDDLPSELDDQHRRALCRLLEELRCQVFITCVDHELLREGWQTE 344

Query: 360 ETAKFMRISNHQALC 374
                  +   +   
Sbjct: 345 TPVALFHVEQGRITQ 359


>gi|157803214|ref|YP_001491763.1| recombination protein F [Rickettsia canadensis str. McKiel]
 gi|226737825|sp|A8EX95|RECF_RICCK RecName: Full=DNA replication and repair protein recF
 gi|157784477|gb|ABV72978.1| recombination protein F [Rickettsia canadensis str. McKiel]
          Length = 360

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 119/361 (32%), Positives = 189/361 (52%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG R A  AD+ +
Sbjct: 6   LHSLILENYRNFKNLELKIDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLADICK 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S    S  A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL 
Sbjct: 66  T-SEDHCSIKALLQSKLGLAEFTTQFKLSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P M+ IF+   +ERR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   I
Sbjct: 122 PQMEGIFTSGKVERRKFLDRIVYNFDPKHAELVGKYEYYMHERNKILAEEIQDDNWLKII 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA++   I + R++ +  +   I     +  FP   LS+ G ++ K       +   
Sbjct: 182 EEKMADISNHIAVNRLKTLEFMQQTINNL--ENEFPKADLSIDGIVEQKILDGEENIVSV 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
              +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 ITAELYKTRNKDKLIGRTSFGVHKSDFLVKHKKKNILAKLCSTGEQKAILIAIILAEMNY 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
               T  AP+LLLDE+  HLD+ +R+ L    T +  Q+++T T+    ++    A+ ++
Sbjct: 300 AIKLTKIAPVLLLDEVFVHLDDKRRDYLTEFFTYLNLQLWITTTNLESIENFASKAQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|228471347|ref|ZP_04056148.1| RecF protein [Porphyromonas uenonis 60-3]
 gi|228306848|gb|EEK15961.1| RecF protein [Porphyromonas uenonis 60-3]
          Length = 372

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 155/375 (41%), Gaps = 21/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  F+N A+    F  +   F G NG+GKTN+L+AI +LS  RG    +    
Sbjct: 1   MILSSLSVINFKNVATANCHFAPKLNCFFGGNGMGKTNLLDAIHYLSVVRGHLGTTDRYA 60

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R G+        +   +G E    + I  E       + L  N  + +   +      +
Sbjct: 61  IRHGAQEAIIQGEYLWDDGQEDKISLRISAERS-----KQLSRNGRLYKRHSDHIGRYPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             + P   R+  G S ERRR +DR++   D  +   +I++ R +  RN +L     + + 
Sbjct: 116 VIISPHDQRLIRGGSDERRRSVDRILSQQDATYLANLINYNRALDQRNNMLRNQIHEPAL 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              +E  +A  G+ +   R   +  L     +  Q       +  L+      F     +
Sbjct: 176 MDILEETLATTGLAVTTMRQAYVEELVPTFDQIYQHLAAGVERAVLS------FSAGSAS 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             EE  + L +GR+ D     T  G HR D  +    + +    GS G+ K  L+   LA
Sbjct: 230 TAEEQLRILRNGRQRDYEYGFTATGCHRDDFEM-LLGENLMRKIGSEGQNKTYLIAYKLA 288

Query: 303 HARLISNT--TGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSLN 359
             R +        AP+LLLD+I   LD D+   +  +V TD   QIF+T T++   D + 
Sbjct: 289 EYRYLQQHLTNQTAPLLLLDDIFDKLDSDRVERIIELVATDTFGQIFITDTNRKYLDEII 348

Query: 360 ETAKF----MRISNH 370
            + +      +I   
Sbjct: 349 SSKQVPYRLFQIQEG 363


>gi|148927274|ref|ZP_01810844.1| DNA replication and repair protein RecF [candidate division TM7
           genomosp. GTL1]
 gi|147887333|gb|EDK72787.1| DNA replication and repair protein RecF [candidate division TM7
           genomosp. GTL1]
          Length = 351

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 148/346 (42%), Gaps = 13/346 (3%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            L + +FR+Y    +      TI  G NG GKTN+LEA+  L+ G  FR AS  ++ +IG
Sbjct: 4   SLRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSFR-ASDQELGQIG 62

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
              ++   AR+   E     SI  E       +   ++ V  + +      L +    P 
Sbjct: 63  MD-WWRLDARLVANESR---SILFEAEKTTGRKTFILDGVKKQRLT-YQHKLPVVLFEPG 117

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR F+D ++  ++P +   +  ++R+++ RN LL   +         + 
Sbjct: 118 DLRLLHGSPARRRLFIDTLISQLEPLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVWDV 177

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
            ++E G +I   R +    L++ + E  +        +SL       F +   ++++   
Sbjct: 178 ALSEYGARIVAERQKYSALLNASLRERYRAIAHTKDIVSLAYS----FQEGAESVQQAMV 233

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
             L      D     T +GPHR DLI    D     +  S GE + +++ +      ++ 
Sbjct: 234 SALHAHHVRDKALGYTTVGPHRHDLIFSMND-VEATSIASRGETRSIVLALKFIEVEMLR 292

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
                 P+LLLD++ + LD  +R AL  +     +Q  +T T+  +
Sbjct: 293 VYRDQPPLLLLDDVFSELDSTRRMALVEV--GSSTQTVITTTNADI 336


>gi|256027569|ref|ZP_05441403.1| RECF protein [Fusobacterium sp. D11]
 gi|289765528|ref|ZP_06524906.1| DNA replication and repair protein recF [Fusobacterium sp. D11]
 gi|289717083|gb|EFD81095.1| DNA replication and repair protein recF [Fusobacterium sp. D11]
          Length = 369

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 75/368 (20%), Positives = 159/368 (43%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  +    FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++
Sbjct: 1   MKISNITYLNFRNLENSSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F S+   +   + +A+  I +  ++    +     +       +    + I  
Sbjct: 61  IKYNFDEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGKVNIIA 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   +
Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242
             E +  +    I   R+E + +LS ++    +K       + L     LD     +   
Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTVKVTIEM 237

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E   K++   +  +   + +L+GPH+ D           I+  S GE+K ++  + L+
Sbjct: 238 IQESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGYEAKIS-ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK     L+  A
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351

Query: 363 KFMRISNH 370
           K   +   
Sbjct: 352 KNFYVEKG 359


>gi|167754087|ref|ZP_02426214.1| hypothetical protein ALIPUT_02375 [Alistipes putredinis DSM 17216]
 gi|167658712|gb|EDS02842.1| hypothetical protein ALIPUT_02375 [Alistipes putredinis DSM 17216]
          Length = 362

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 165/374 (44%), Gaps = 18/374 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  F+N     L F      FVGDNG GKTN+++A+ FLS  +     +    
Sbjct: 1   MYLKKLSLINFKNIREENLEFRPGINCFVGDNGAGKTNVIDAVYFLSMCKSSLAMTDGQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS  FF    +    EG ++  +    R  +  + L+ N      + +    + +  
Sbjct: 61  MRHGSD-FFLLDGQYLTDEGRSESVVCAFAR--KGGKTLKRNGKEYERLSDHVGLIPVVI 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P+   + S  + ERRR+L+  +  +D  + + ++ +  ++  RNRLL     D     
Sbjct: 118 VSPADTMLISDAADERRRYLNGFISQLDRAYLQALVRYNAVLGERNRLLK-ISRDEQMLC 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+ E G  I+  R E+   L   +  Y +  +    +++L    +           
Sbjct: 177 IYDRQLVEQGGIIHRKRSEIAALLEPEVARYYRHLSSDREQVTLEYRSELNDTP------ 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             + + L   R+ D ++  T  G HR DL++      +   +GS G+QK  L+ + LA  
Sbjct: 231 --FEELLLKSREKDFVNGFTTAGIHRDDLVLHIGGYPLR-KYGSQGQQKSFLIALKLAQY 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTD----KSVFDSLN 359
            L++   G  PILLLD++   LD  +   L R+V D G  QIF+T  +    +++ D   
Sbjct: 288 ALVAQAKGEKPILLLDDLFDKLDAGRVEQLIRLVGDDGFGQIFITDCNPTRLRTILDKTG 347

Query: 360 ETAKFMRISNHQAL 373
           +      + N   +
Sbjct: 348 DDYSLFTVENGGIV 361


>gi|239948452|ref|ZP_04700205.1| DNA replication and repair protein RecF [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922728|gb|EER22752.1| DNA replication and repair protein RecF [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 360

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 117/361 (32%), Positives = 184/361 (50%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +RN+ +L L  D    I +G+NG GKTNILEAIS   PGRG + A  A    
Sbjct: 6   LHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLKSAKLA-YIC 64

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S    +  A ++   GLA+ + + +   +R  R  + N+  I   +EL+K   + WL 
Sbjct: 65  KTSEDHCTVKALLQSKLGLAEFTTQFKRSSNR--RITEYNESKI-ANNELSKFTSMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
             M+ IF+  S +RR+FLDR+V+  DP+H   +  +E  M  RN++L E   D +W   I
Sbjct: 122 SQMEGIFTSGSSDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILAEDIRDDNWLKII 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA++   I   R++ +  +   I E   +  FP   LS+ G ++ K       +   
Sbjct: 182 EEKMADISNHIANNRLKTLEFMQQAIDEL--ENEFPKADLSIDGIVEQKILDGEENIVSF 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
              +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
               T  APILLLDE+  HLD+ +R  L    T +  Q+++T TD    ++     + ++
Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFFTCLNMQLWVTATDLEGIENFAGKTQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|256831258|ref|YP_003159985.1| DNA replication and repair protein RecF [Jonesia denitrificans DSM
           20603]
 gi|256684789|gb|ACV07682.1| DNA replication and repair protein RecF [Jonesia denitrificans DSM
           20603]
          Length = 415

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 153/391 (39%), Gaps = 39/391 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ ++R+Y  + + F     + VG NG GKTNI+EAI +L+     R A    +
Sbjct: 1   MYVSHLSLVDYRSYEHVDIEFAPGVNVLVGHNGQGKTNIVEAIGYLATLASHRVAHDTAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+         V G        ++LE    ++ +         R    L   ++   
Sbjct: 61  IRVGAQRALIRSRVVRGDRAQV---VELELLHGKANKARVNRGQPGRASTVL-GIVKTVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GYF 178
             P    +  G    RRR+LD +   + PR R  + D+++++R R+ LL +       + 
Sbjct: 117 FAPEDLVLVKGDPDARRRYLDDLTVLMIPRMRSVLADYDKVVRQRSALLKQLMRGGASHA 176

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV------QKENFPHIKLSLTGFL 232
             +  +  + +M  LG +I   R  ++ AL+  +          Q E     + SL  FL
Sbjct: 177 SDATLAVWDERMVALGSQIIGVRQRLVAALAPHLASGYETVSSGQSEAKMRYRPSLESFL 236

Query: 233 DGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           D       S   +   YA+ L   R+ +      ++GPHR D+     +  +   + S G
Sbjct: 237 DEPMPAVMSVEEISVIYAEVLARARRRELERGVCIVGPHRDDVEQTLNNLPVK-GYASHG 295

Query: 291 EQKVVLVGIFLAHARLISN--------------------TTGFAPILLLDEISAHLDEDK 330
           E     + + LA  RL++                          PIL+LD++ A LD  +
Sbjct: 296 ESWSYALAMRLASYRLMTEGPDENDPASADLQDMWWTDSQEDTEPILILDDVFAELDVRR 355

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           R  L  I       I      + V D L   
Sbjct: 356 RRQLADIAAQARQVIITAAVAQDVPDQLRGR 386


>gi|256846676|ref|ZP_05552132.1| DNA replication and repair protein recF [Fusobacterium sp.
           3_1_36A2]
 gi|294784383|ref|ZP_06749674.1| RECF protein [Fusobacterium sp. 3_1_27]
 gi|256717896|gb|EEU31453.1| DNA replication and repair protein recF [Fusobacterium sp.
           3_1_36A2]
 gi|294487955|gb|EFG35310.1| RECF protein [Fusobacterium sp. 3_1_27]
          Length = 369

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 159/368 (43%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  +    FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++
Sbjct: 1   MKISNITYLNFRNLENNSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F S+   +   + +A+  I +  ++    +     +       +    + I  
Sbjct: 61  IKYNFEEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGKVNIIA 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   +
Sbjct: 118 YIPEDIILINGSPKHRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242
             E +  +    I   R+E + +LS ++    +K       + L     LD     +   
Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKITVEM 237

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E   K++   +  +   + +L+GPH+ D           ++  S GE+K ++  + L+
Sbjct: 238 IQESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGHEAKVS-ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK     L+  A
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351

Query: 363 KFMRISNH 370
           K   +   
Sbjct: 352 KNFYVEKG 359


>gi|15826868|ref|NP_301131.1| recombination protein F [Mycobacterium leprae TN]
 gi|221229346|ref|YP_002502762.1| recombination protein F [Mycobacterium leprae Br4923]
 gi|13432238|sp|P46391|RECF_MYCLE RecName: Full=DNA replication and repair protein recF
 gi|254790484|sp|B8ZTP0|RECF_MYCLB RecName: Full=DNA replication and repair protein recF
 gi|13092415|emb|CAC29511.1| putative DNA replication and SOS induction protein [Mycobacterium
           leprae]
 gi|219932453|emb|CAR70096.1| putative DNA replication and SOS induction protein [Mycobacterium
           leprae Br4923]
          Length = 385

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 159/379 (41%), Gaps = 23/379 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++   + +FR++  + L  +   T+F G NG GKTN++EA+ + +     R  +   +
Sbjct: 1   MYVRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       + +I LE    R+ R  ++N  ++R + E+   LR   
Sbjct: 61  IRAGTIRAIVSTIVVNEG---RECAIDLEIAAGRANRA-RLNRSLVRGMREVVGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179
             P    +  G    RRR+LD +     P       D+++++R R  LL          D
Sbjct: 117 FAPEDLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRTALLKSLAAARYRSD 176

Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLD- 233
                     + ++AE G ++  AR++++N L+  + +  Q          +S    LD 
Sbjct: 177 QGVLDTLDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQLLAPGSRTASISYRASLDI 236

Query: 234 ----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
               G        L+ +    L   R ++      L+GPHR +L +   D+       S 
Sbjct: 237 GGIAGVGSSDRALLQADLLAGLSTRRNVELERGICLVGPHRDELELRLGDQPAK-GFASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE   + + + LA   L+    G  P+LLLD++ A LD  +  AL   V +   Q+ +T 
Sbjct: 296 GESWSLAIALRLAAYELL-RADGNEPVLLLDDVFAELDAARCRALA-TVAESAEQVLVTS 353

Query: 350 TDKSVFDSLNETAKFMRIS 368
             +     +   AK++ + 
Sbjct: 354 AAQEDIP-VGWDAKWVTVD 371


>gi|314965766|gb|EFT09865.1| recombination protein F [Propionibacterium acnes HL082PA2]
          Length = 401

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/392 (23%), Positives = 163/392 (41%), Gaps = 27/392 (6%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVRADVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL          
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKFLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI----MEYVQKENFPHIKLSLTGF 231
           G    +     + ++A +G ++  AR++ ++A+  LI     E     +        T  
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAIMPLISTAYHEIAPANDLTTASYKSTID 245

Query: 232 LDGKFDQ----------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           L+G +                L   +   L   R  + +   TL+GP R D+I+   +  
Sbjct: 246 LEGLWSPQQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 305

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V   
Sbjct: 306 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 363

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             Q+ +T    S    +    +   +   Q L
Sbjct: 364 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393


>gi|294781813|ref|ZP_06747146.1| RECF protein [Fusobacterium sp. 1_1_41FAA]
 gi|294481923|gb|EFG29691.1| RECF protein [Fusobacterium sp. 1_1_41FAA]
          Length = 369

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 160/368 (43%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  ++   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+     ++
Sbjct: 1   MKISNISYLNFRNLENTSIELSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTTEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F S+ +          IS++       + +    N   I   D   K + I  
Sbjct: 61  IKYNFDEFISSIS-YSDYIANNKISVRF-KNIPGAKKEFFFNKKRISQTDFYGK-INIIA 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   ++   +
Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNTEEFA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQSFCA 242
             E +  +    I   R+E + +LS ++    +K      +L+L     LD     +   
Sbjct: 178 VYEKEFIKYASYIIFTRLEYVKSLSIILNLQYRKLFNIEQELNLKYETNLDKTGKVTVEM 237

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E   K++   +  +   + +L+GPH+ D           I+  S GE+K ++  + L+
Sbjct: 238 IQESLQKEILQKKHQEDRYKFSLVGPHKDDYKFLLNGYEAKIS-ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK     L+  A
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILEFFNKRDIQVLISSTDK-----LDIEA 351

Query: 363 KFMRISNH 370
           K   +   
Sbjct: 352 KNFYVEKG 359


>gi|314922681|gb|EFS86512.1| recombination protein F [Propionibacterium acnes HL001PA1]
 gi|314982907|gb|EFT26999.1| recombination protein F [Propionibacterium acnes HL110PA3]
 gi|315091213|gb|EFT63189.1| recombination protein F [Propionibacterium acnes HL110PA4]
 gi|315094447|gb|EFT66423.1| recombination protein F [Propionibacterium acnes HL060PA1]
 gi|315105167|gb|EFT77143.1| recombination protein F [Propionibacterium acnes HL050PA2]
          Length = 401

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 90/393 (22%), Positives = 166/393 (42%), Gaps = 29/393 (7%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVRADVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL          
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
           G    +     + ++A +G ++  AR++ ++A+  LI     +E  P   L+   +    
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAIMPLISTAY-REIAPANDLTTASYKSTI 244

Query: 236 FDQSFCALKEE---------------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
             +   + ++E               +   L   R  + +   TL+GP R D+I+   + 
Sbjct: 245 DLEGLWSPQQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEM 304

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V  
Sbjct: 305 PAK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQ 362

Query: 341 IGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
              Q+ +T    S    +    +   +   Q L
Sbjct: 363 AD-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393


>gi|118497329|ref|YP_898379.1| RecFOR complex, RecF component [Francisella tularensis subsp.
           novicida U112]
 gi|195536015|ref|ZP_03079022.1| RecF/RecN/SMC N domain protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|208779116|ref|ZP_03246462.1| RecF/RecN/SMC N domain protein, putative [Francisella novicida FTG]
 gi|254372694|ref|ZP_04988183.1| RecFOR complex [Francisella tularensis subsp. novicida GA99-3549]
 gi|254374152|ref|ZP_04989634.1| DNA replication and repair protein recF [Francisella novicida
           GA99-3548]
 gi|259563659|sp|A0Q5W0|RECF_FRATN RecName: Full=DNA replication and repair protein recF
 gi|118423235|gb|ABK89625.1| RecFOR complex, RecF component [Francisella novicida U112]
 gi|151570421|gb|EDN36075.1| RecFOR complex [Francisella novicida GA99-3549]
 gi|151571872|gb|EDN37526.1| DNA replication and repair protein recF [Francisella novicida
           GA99-3548]
 gi|194372492|gb|EDX27203.1| RecF/RecN/SMC N domain protein, putative [Francisella tularensis
           subsp. novicida FTE]
 gi|208744916|gb|EDZ91214.1| RecF/RecN/SMC N domain protein, putative [Francisella novicida FTG]
          Length = 349

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/361 (24%), Positives = 160/361 (44%), Gaps = 15/361 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN  +    F       VG NG GKT+ILE+I FLS  R FR +    +
Sbjct: 1   MYISNLRLQNFRNIPAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F              +I+I L  R   S    ++N  + +   E+ ++L I  
Sbjct: 61  INHNADEFII----YTKAYNPDEITISLS-RKKNSNNISKLNLEIQKNHTEITRNLPIQL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    I +  + +R + LD   F +D    +     + L++ RN  L + Y   S+  
Sbjct: 116 INPESFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNYP-YSYIL 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           SI+ ++ E    ++  R      L   I E +   N P+++L +  F      +S     
Sbjct: 175 SIDKKLCEFAEILDYKRHAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKS----- 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A+ L +    D+  + T  GPH++D+++    K I     S G+QK+++  + LA  
Sbjct: 229 --LAQVLEESFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQG 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            + ++      I L+D+I++ LD      LF  +  + SQ+F+T T+K+  +   +T  +
Sbjct: 286 EIHNSENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSY 345

Query: 365 M 365
           +
Sbjct: 346 I 346


>gi|172037526|ref|YP_001804027.1| recombination protein F [Cyanothece sp. ATCC 51142]
 gi|254790472|sp|B1WT39|RECF_CYAA5 RecName: Full=DNA replication and repair protein recF
 gi|171698980|gb|ACB51961.1| DNA repair and genetic recombination protein [Cyanothece sp. ATCC
           51142]
          Length = 380

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 88/386 (22%), Positives = 176/386 (45%), Gaps = 21/386 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  FRNY    L   +Q TI +G+N  GK+N+LEA+  L+  +  R     D+
Sbjct: 1   MYLKHIHLYGFRNYHEQTLDLQSQKTILLGNNAQGKSNLLEAVELLATLKSHRTNRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +     A VE   G +++ I   +   RS   L +N   +R   +   H+    
Sbjct: 61  ILEGKKTG-QILAMVERTYGESELGITFRSPGRRS---LMLNHENLRRHLDFLGHINAVE 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174
                  +  G    RR +LD ++  ++P +   +  + +++R RN LL           
Sbjct: 117 FSCLDLDLVRGSPETRRSWLDTLLIQLEPVYASIIHQYYKILRQRNALLKVIRKTVEEQE 176

Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                  + S     + Q+AE G ++   R  +I  ++ L  ++ Q+ +     L++   
Sbjct: 177 NSSNLSAELSQLKVWDQQLAEAGTRVTRRRYRVIERITPLAQKWHQEISSGTEILAINYL 236

Query: 232 LDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            + K + +    +++ +  K+   R  +     T++GPHR D+  +  +     ++GS G
Sbjct: 237 PNIKIENEDPQQVQQAFLDKIEQRRMAEQQLATTVVGPHRDDVEFNI-NHTPAKSYGSQG 295

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+ +++ I LA  +LI    G  P+LLLD++ A LD +++N L  ++     Q  +T T
Sbjct: 296 QQRTLVLAIKLAELQLIEEVIGEPPLLLLDDVLAELDPNRQNQLLEVIQG-RFQTLITTT 354

Query: 351 DKSVFDS-LNETAKFMRISNHQALCI 375
               FD+    +++ M++   +   +
Sbjct: 355 YLHSFDAQWLNSSQIMKVEGGKIAQL 380


>gi|237738563|ref|ZP_04569044.1| DNA replication and repair protein recF [Fusobacterium sp. 2_1_31]
 gi|229424046|gb|EEO39093.1| DNA replication and repair protein recF [Fusobacterium sp. 2_1_31]
          Length = 369

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 161/368 (43%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  ++   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    A++
Sbjct: 1   MKISNISYLNFRNLENTSVELSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTAEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F S+ +          IS++       + +    N   I   D   K + I  
Sbjct: 61  IKYNFDEFISSIS-YSDYIANNKISVRF-KNIPGAKKEFFFNKKRISQTDFYGK-INIIA 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   ++   +
Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNTEEFA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQSFCA 242
             E +  +    I   R+E + +LS ++    +K      +L+L     LD     +   
Sbjct: 178 IYEKEFIKYASYIIFRRLEYVKSLSIILNLQYRKLFNIEQELNLKYETNLDKTGKVTVEM 237

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E   K++   +  +   + +L+GPH+ D           I+  S GE+K ++  + L+
Sbjct: 238 IQESLQKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGYEAKIS-ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK     L+  A
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILEFFNKRDIQVLISSTDK-----LDIEA 351

Query: 363 KFMRISNH 370
           K   +   
Sbjct: 352 KNFYVEKG 359


>gi|295129533|ref|YP_003580196.1| DNA recombination and repair protein RecF [Propionibacterium acnes
           SK137]
 gi|291377073|gb|ADE00928.1| DNA recombination and repair protein RecF [Propionibacterium acnes
           SK137]
 gi|313771063|gb|EFS37029.1| recombination protein F [Propionibacterium acnes HL074PA1]
 gi|313806859|gb|EFS45357.1| recombination protein F [Propionibacterium acnes HL087PA2]
 gi|313811772|gb|EFS49486.1| recombination protein F [Propionibacterium acnes HL083PA1]
 gi|313814218|gb|EFS51932.1| recombination protein F [Propionibacterium acnes HL025PA1]
 gi|313817646|gb|EFS55360.1| recombination protein F [Propionibacterium acnes HL046PA2]
 gi|313821529|gb|EFS59243.1| recombination protein F [Propionibacterium acnes HL036PA1]
 gi|313824527|gb|EFS62241.1| recombination protein F [Propionibacterium acnes HL036PA2]
 gi|313826196|gb|EFS63910.1| recombination protein F [Propionibacterium acnes HL063PA1]
 gi|313832306|gb|EFS70020.1| recombination protein F [Propionibacterium acnes HL007PA1]
 gi|313832766|gb|EFS70480.1| recombination protein F [Propionibacterium acnes HL056PA1]
 gi|314926330|gb|EFS90161.1| recombination protein F [Propionibacterium acnes HL036PA3]
 gi|314961666|gb|EFT05767.1| recombination protein F [Propionibacterium acnes HL002PA2]
 gi|314969080|gb|EFT13178.1| recombination protein F [Propionibacterium acnes HL037PA1]
 gi|314975201|gb|EFT19296.1| recombination protein F [Propionibacterium acnes HL053PA1]
 gi|314977614|gb|EFT21709.1| recombination protein F [Propionibacterium acnes HL045PA1]
 gi|314980254|gb|EFT24348.1| recombination protein F [Propionibacterium acnes HL072PA2]
 gi|314985200|gb|EFT29292.1| recombination protein F [Propionibacterium acnes HL005PA1]
 gi|315081494|gb|EFT53470.1| recombination protein F [Propionibacterium acnes HL078PA1]
 gi|315083083|gb|EFT55059.1| recombination protein F [Propionibacterium acnes HL027PA2]
 gi|315086616|gb|EFT58592.1| recombination protein F [Propionibacterium acnes HL002PA3]
 gi|315088018|gb|EFT59994.1| recombination protein F [Propionibacterium acnes HL072PA1]
 gi|315097159|gb|EFT69135.1| recombination protein F [Propionibacterium acnes HL038PA1]
 gi|315109863|gb|EFT81839.1| recombination protein F [Propionibacterium acnes HL030PA2]
 gi|327332503|gb|EGE74238.1| RecF protein [Propionibacterium acnes HL096PA2]
 gi|327333676|gb|EGE75393.1| RecF protein [Propionibacterium acnes HL096PA3]
 gi|327444466|gb|EGE91120.1| recombination protein F [Propionibacterium acnes HL013PA2]
 gi|327446720|gb|EGE93374.1| recombination protein F [Propionibacterium acnes HL043PA2]
 gi|327448838|gb|EGE95492.1| recombination protein F [Propionibacterium acnes HL043PA1]
 gi|328757973|gb|EGF71589.1| recombination protein F [Propionibacterium acnes HL020PA1]
 gi|328759814|gb|EGF73405.1| RecF protein [Propionibacterium acnes HL099PA1]
          Length = 401

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 163/392 (41%), Gaps = 27/392 (6%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL          
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGF 231
           G    +     + ++A +G ++  AR++ ++A+  L     ++     +        T  
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTID 245

Query: 232 LDGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           L+G +                L   +   L   R  + +   TL+GP R D+I+   +  
Sbjct: 246 LEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 305

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V   
Sbjct: 306 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 363

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             Q+ +T    S    +    +   +   Q L
Sbjct: 364 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393


>gi|237743162|ref|ZP_04573643.1| DNA replication and repair protein recF [Fusobacterium sp. 7_1]
 gi|229433458|gb|EEO43670.1| DNA replication and repair protein recF [Fusobacterium sp. 7_1]
          Length = 369

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 159/368 (43%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  +    FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++
Sbjct: 1   MKISNITYLNFRNLENSSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F S+ +  +       IS++       + +    N   I   D   K + I  
Sbjct: 61  IKYNFEEFISSIS-YQDYIASNKISVRF-KNITGAKKEFFFNKKRISQTDFYGK-VNIIA 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +  ID  +   + D+++L++ RN+ L E   +S   +
Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLSNLKDYDKLLKIRNKYLKENKRNSEEFA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242
             E +  +    I   R+E + +LS ++    +K       + L     LD     +   
Sbjct: 178 IYEREFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLKYETSLDKTAKVTIEM 237

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E   K++   +  +   + +L+GPH+ D           I+  S GE+K ++  + L+
Sbjct: 238 IQESLKKEISQKKYQEDKYKFSLVGPHKDDYKFLLNGYEAKIS-ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK     L+  A
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351

Query: 363 KFMRISNH 370
           K   +   
Sbjct: 352 KNFYVEKG 359


>gi|193214559|ref|YP_001995758.1| DNA replication and repair protein RecF [Chloroherpeton thalassium
           ATCC 35110]
 gi|226737776|sp|B3QWU7|RECF_CHLT3 RecName: Full=DNA replication and repair protein recF
 gi|193088036|gb|ACF13311.1| DNA replication and repair protein RecF [Chloroherpeton thalassium
           ATCC 35110]
          Length = 368

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/364 (21%), Positives = 144/364 (39%), Gaps = 11/364 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L+I  FR++     +      +  G NG GKTN+LEAI +    + F   S +D 
Sbjct: 1   MKLFKLSIHGFRSHQDAVFLPHDGINLIYGKNGTGKTNLLEAIHYTCLTKSFLSTSDSDA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F          E  + + +     +    + + IN   +    ++        
Sbjct: 61  LHFQAGHFELEAVLQSDSENESKVRVYYSPAEG---KHVFINKTPLESFSKIVGEFPCVA 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSS 181
           L P    +  G   ERRRFLD  +   +  +   ++ + R++  RN+LL       F S 
Sbjct: 118 LSPYDIALTQGSPQERRRFLDASISQTNKAYLADLLSYRRVLAQRNKLLADMKHRTFSSP 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238
                 A ++ L   I   R+  +   +  +               LT   +   ++   
Sbjct: 178 ELDVWTASLSALAASIIFRRIHFVRDFAQYLENAYADFQSIDETPGLTYKTELSLNENSF 237

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   L ++ ++K  + +  +     TL GPHR DL     + ++   + S G+ K  ++ 
Sbjct: 238 SEAELAKQISEKFEEMKFDELRRGLTLFGPHRDDLAFSINNLSLR-KYASQGQHKTFVIC 296

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDS 357
           + LA    I       PI LLD++ + LD  +   L RI++     Q F+T T++  F  
Sbjct: 297 LKLAQYFYICELLSEKPIFLLDDVFSELDSQRAEELVRILSSKRSGQSFITTTERKDFAE 356

Query: 358 LNET 361
           + + 
Sbjct: 357 VKQH 360


>gi|187931536|ref|YP_001891520.1| RecFOR complex, RecF component [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|259563658|sp|B2SG84|RECF_FRATM RecName: Full=DNA replication and repair protein recF
 gi|187712445|gb|ACD30742.1| RecFOR complex, RecF component [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 349

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/361 (24%), Positives = 160/361 (44%), Gaps = 15/361 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN  +    F       VG NG GKT+ILE+I FLS  R FR +    +
Sbjct: 1   MYISNLRLQNFRNIHAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F              +I+I L  R   S    ++N  + +   E+ ++L I  
Sbjct: 61  INHNADEFII----YTKAYNPDEITISLS-RKKNSNNISKLNLEIQKNHTEITRNLPIQL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    I +  + +R + LD   F +D    +     + L++ RN  L + Y   S+  
Sbjct: 116 INPESFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNYP-YSYIL 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           SI+ ++ E    ++  R      L   I E +   N P+++L +  F      +S     
Sbjct: 175 SIDKKLCEFAEILDYKRQAYFTKLKPKIYEILSHFN-PNLQLDIDYFRGWNLHKS----- 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A+ L +    D+  + T  GPH++D+++    K I     S G+QK+++  + LA  
Sbjct: 229 --LAQVLEESFNYDNKYKVTNHGPHKADIVLSVSHKPIQDIF-SRGQQKLLICALKLAQG 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            + ++      I L+D+I++ LD      LF  +  + SQ+F+T T+K+  +   +T  +
Sbjct: 286 EIHNSENDNKCIYLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSY 345

Query: 365 M 365
           +
Sbjct: 346 I 346


>gi|78185894|ref|YP_373937.1| RecF protein [Chlorobium luteolum DSM 273]
 gi|123730146|sp|Q3B6Y7|RECF_PELLD RecName: Full=DNA replication and repair protein recF
 gi|78165796|gb|ABB22894.1| RecF protein [Chlorobium luteolum DSM 273]
          Length = 369

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 88/359 (24%), Positives = 160/359 (44%), Gaps = 11/359 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++K + +  FRN+ SL    +   T+  G NG GKT++LEAI + +  +    A  ++ 
Sbjct: 1   MRLKNIQVENFRNHHSLAFQPEEGITVLYGPNGSGKTSVLEAIHYCALTKSLLGAPESEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F  +   V        +S+K+    DR  + +Q+N   ++   +    +    
Sbjct: 61  LAFSEEYFIISGEFVSTRG--TSLSVKVSYGKDRG-KLVQLNQSEVKPFSQHVGTIPCIT 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             PS   I +G   ERRRFLD  +   D R+   ++D+ R+++ RN LL +         
Sbjct: 118 FSPSEIAIVNGSPGERRRFLDNALSQSDRRYLDELLDYRRVLQQRNALLLQLASSSGGSR 177

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                    +A+L   + + R+  +  LS                L       G  D   
Sbjct: 178 EMLDLWTENLADLAAGVTLRRISFLGELSVYFEPLQTSLAGKGSHLVTYRSSFGTIDSGL 237

Query: 241 C--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               L++ Y K+  + ++ + +  +T+ GPHR DL+     + I   +GS G+Q+  L+ 
Sbjct: 238 SRDELRDRYIKRFKETQRQELLRTQTMSGPHRDDLLFLSNGREIK-KYGSQGQQRAFLIS 296

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           + LA  R  S+    +PI L D++ + LD ++ + +F I+ D G Q  +T TD S+  +
Sbjct: 297 LKLALFRYFSHRLPESPICLFDDMFSELDAERTSEIFNILEDCG-QTILTTTDGSLHPA 354


>gi|283768638|ref|ZP_06341550.1| putative recombination protein F [Bulleidia extructa W1219]
 gi|283105030|gb|EFC06402.1| putative recombination protein F [Bulleidia extructa W1219]
          Length = 359

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 88/369 (23%), Positives = 164/369 (44%), Gaps = 13/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +S +RNY  L++ F     + VG N  GKTN++EA+ +LS  R FR      +
Sbjct: 1   MYIKSLELSHYRNYHHLQVSFQPYLNVIVGKNAQGKTNLIEALYYLSLCRSFRTNQDQAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     + +   ++E  +  + +   L        + L I  + I    E    L +  
Sbjct: 61  IQK-EEKYANLACQIEERKQESYLRCILHGNG----KSLFIGKINISKTSEFIGRLNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +FS     RR+F+D+ +  +  ++   +  ++ L++ RN LL +   D +   
Sbjct: 116 FSPEDIYLFSQAPKARRKFMDQELMKLSKKYLFHLTRYQILLKERNMLLRKTKIDETMLD 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            ++ QM E  V+I   R+  +  ++  I    Q  +   + L +      +  +     K
Sbjct: 176 ILDQQMVESEVEILKRRISFLQFINQKIESLFQSISGMPLNLKIEIKQGIEVKKIE---K 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +E  +     RK D  +R T +G HR D+      K I ++  S G++++V++   L   
Sbjct: 233 KELVEAHLSSRKRDIETRITNVGIHRGDIQFLLDGKDILLS-ASQGQKRLVMIAFKLTIL 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
           R I   +    I+LLD++ + LD +++  L   V +   Q F+T T   + DSL  E   
Sbjct: 292 RYIEFISKRKAIVLLDDVLSELDLERQKRLIHAVKN-DYQCFITATH--LPDSLKLEQTN 348

Query: 364 FMRISNHQA 372
            + I + + 
Sbjct: 349 CISIEDGKI 357


>gi|332667472|ref|YP_004450260.1| DNA replication and repair protein recF [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332336286|gb|AEE53387.1| DNA replication and repair protein recF [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 365

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/378 (22%), Positives = 164/378 (43%), Gaps = 24/378 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++ F+NY + +L    +    VG+NG+GKTN+L+AI +L   +     +   +
Sbjct: 1   MYLERIALANFKNYENQKLDCSPRLNCLVGNNGMGKTNLLDAIYYLCMAKSHFNLTDNAI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRIS 123
            R         F R+EG   L     K+  +   R ++ L+ NDV    + E    L + 
Sbjct: 61  ARHHE-----AFFRLEGHFVLHGKKEKIVAKVMPRKLKELERNDVAYAKLAEHIGLLPVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179
           ++ P   ++    S ERRRFLD  +  +D R+   +I + +++  RN LL         +
Sbjct: 116 FIGPDDIQLIREGSEERRRFLDNTLSQLDQRYLYELIAYNKVLHQRNALLKNLAERSGGN 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            S     + Q+ +  + +   R +     +++     Q  +    ++ LT          
Sbjct: 176 LSLLDVYDEQLIDPALYVLEQRAKFAQKFTAIFQSTHQYISGRGEEVQLTY--------E 227

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L+ +    L + R+ D   +RT  G HR DL+    +  +    GS G+ K  L+ +
Sbjct: 228 SQLLENDLGDLLANSRQRDLALQRTTKGIHRDDLVFSLGEHPLK-KFGSQGQLKSFLLAL 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSL 358
            LA   ++       PILLLD++   LD  +   L R++T+    QIF+T T ++    +
Sbjct: 287 KLAQYEMLRQNKAVPPILLLDDLFDKLDAQRVTHLLRLLTEGQFGQIFITDTHETRIAEI 346

Query: 359 ----NETAKFMRISNHQA 372
                   +   + + + 
Sbjct: 347 VAQFGVEYRRFVVEDGKI 364


>gi|237741010|ref|ZP_04571491.1| DNA replication and repair protein recF [Fusobacterium sp. 4_1_13]
 gi|229431054|gb|EEO41266.1| DNA replication and repair protein recF [Fusobacterium sp. 4_1_13]
          Length = 369

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 158/368 (42%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  +    FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++
Sbjct: 1   MKISNITYLNFRNLENNSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F S+   +   + +A+  I +  ++    +     +       +    + I  
Sbjct: 61  IKYNFEEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGKVNIIA 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   +
Sbjct: 118 YIPEDIILINGSPKHRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242
             E +  +    I   R+E + +LS ++    +K       + L     LD     +   
Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKITVEM 237

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E   K++   +  +   + +L+GPH+ D            +  S GE+K ++  + L+
Sbjct: 238 IQESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGHEAKFS-ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK     L+  A
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351

Query: 363 KFMRISNH 370
           K   +   
Sbjct: 352 KNFYVEKG 359


>gi|314987109|gb|EFT31201.1| recombination protein F [Propionibacterium acnes HL005PA2]
 gi|314990689|gb|EFT34780.1| recombination protein F [Propionibacterium acnes HL005PA3]
          Length = 401

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 163/392 (41%), Gaps = 27/392 (6%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVCADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL          
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGF 231
           G    +     + ++A +G ++  AR++ ++A+  L     ++     +        T  
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTID 245

Query: 232 LDGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           L+G +                L   +   L   R  + +   TL+GP R D+I+   +  
Sbjct: 246 LEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 305

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V   
Sbjct: 306 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 363

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             Q+ +T    S    +    +   +   Q L
Sbjct: 364 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393


>gi|227498786|ref|ZP_03928926.1| recombination protein F [Acidaminococcus sp. D21]
 gi|226904238|gb|EEH90156.1| recombination protein F [Acidaminococcus sp. D21]
          Length = 377

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 142/371 (38%), Gaps = 16/371 (4%)

Query: 11  NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70
            +  FRNY  L +      T+  G N  GKTN+LE + + + G  FR     ++ + G  
Sbjct: 2   RLHHFRNYGDLTMNLSHDLTVIYGRNAQGKTNLLEGLYYAAMGFSFRSRHDEELVKFGET 61

Query: 71  SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130
              +     +   G   + +K      R+ +  Q N   I    E    L +    P   
Sbjct: 62  DCAAEVTYCD-RYGENRLLVKRIQEGKRTRKQAQRNGTPI-SPKEHYGSLNLVLFTPDDL 119

Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSI 186
           ++  G    RRRFLD  +      +   + ++ R+++ RNR L     +   D       
Sbjct: 120 QLVKGDPSLRRRFLDMEIAQTSRFYYEALQNYNRVLQQRNRFLRHCRDQEKLDEGQLFVW 179

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-------S 239
           +  ++     I   R++ +  +                K++L+        +       S
Sbjct: 180 DEALSRSAAVIVFERLKAMEEIERAAGLVYGTITQDREKMTLSYLQKRSDGEGVPPKGLS 239

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               +  Y ++L    ++D +   T +GPHR DL +    + +  + GS G+Q+   + +
Sbjct: 240 LSEWQAFYQEELKKRHRLDYVRGYTSMGPHRDDLEILQEGRPLR-SFGSQGQQRTAALAL 298

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L+    I ++    PILLLD++ + LDE +R  L   +     Q  +T  +       +
Sbjct: 299 KLSELEFIFHSKEEYPILLLDDVLSELDEGRRRMLLDGMGGK-VQTLLT-VNDRALARSS 356

Query: 360 ETAKFMRISNH 370
               F  + + 
Sbjct: 357 GDVVFYEVRSG 367


>gi|83814830|ref|YP_444220.1| DNA replication and repair protein RecF [Salinibacter ruber DSM
           13855]
 gi|97180944|sp|Q2S6G1|RECF_SALRD RecName: Full=DNA replication and repair protein recF
 gi|83756224|gb|ABC44337.1| DNA replication and repair protein RecF [Salinibacter ruber DSM
           13855]
          Length = 412

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 76/379 (20%), Positives = 155/379 (40%), Gaps = 16/379 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FR +A           +  G NG GKTN+LEA+ +L   + F  +     
Sbjct: 1   MILHTLRLRSFRAHAESEFDLAPSINLLYGANGAGKTNVLEAVHYLCLTKSFTASRDRYA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +P +F    R+ G      ++++L        + + +N   +  + ++   L +  
Sbjct: 61  VRKDAP-YFEIEGRI-GQVREEPMTVRLAYVPGEG-KSIFVNGAELDRLADIVGTLPVVV 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEGYFD 179
             P    + +G   ERRRF++ ++      +   ++ + R  R RN +L           
Sbjct: 118 FSPEDYDLTAGGPSERRRFVNNILSQARSVYMETLMKYRRARRQRNEVLRSYKKRSAPPP 177

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK--LSLTGFLDGKFD 237
               +    ++  LG +I   R + + A +  + E  ++ +    +  +      D   D
Sbjct: 178 DELLAPWTEKLVGLGSRIVHRRQQFLQAFADDLEEAYRRIDAVAERPTIEYDTIADLAPD 237

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +  A+++E+   L   +  +     TL+GP R +L+    D  +   +GS G+ +   +
Sbjct: 238 ATPDAIEDEFRAALARKQGQERDRGTTLVGPQRDELVFRLDDLEVR-RYGSQGQHRTFAM 296

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFD 356
            + LA    +       P+LLLD+    LD ++      ++ +D   Q  +T T +  F 
Sbjct: 297 ALKLAQYFYLQQRNDTEPLLLLDDAFGKLDAERTGVFLDLLRSDAVGQSLVTATRRGPF- 355

Query: 357 SLNETAKFMRISNHQALCI 375
              E A     ++H+AL +
Sbjct: 356 ---EPALNAEPASHRALQV 371


>gi|257470422|ref|ZP_05634513.1| RECF protein [Fusobacterium ulcerans ATCC 49185]
 gi|317064630|ref|ZP_07929115.1| DNA replication and repair protein recF [Fusobacterium ulcerans
           ATCC 49185]
 gi|313690306|gb|EFS27141.1| DNA replication and repair protein recF [Fusobacterium ulcerans
           ATCC 49185]
          Length = 375

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 72/370 (19%), Positives = 157/370 (42%), Gaps = 13/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  +N   FRN     + F  +  +F G NG GKT++LEA+ F S G+ FR    +++
Sbjct: 1   MEILEINYVNFRNLQDGNVKFFPKLNLFYGKNGQGKTSLLEALYFNSTGKSFRTNKSSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G       +   +   G   +++K    D +       N   +   DE    L +  
Sbjct: 61  MKYGYKR-TGVYVVYKDNIGEKTLTVKFNNEDKKE---YSYNGKKV-QYDEFYGKLNVVT 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +      + + + +F ++++ RN+ L E        +
Sbjct: 116 YIPEDIVLITGSPSVRRNFFDGEIAQTSSEYFQELKNFNKILKIRNKYLKEKKHKEPEFA 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQSFCA 242
             + +  + G K+   R+E +  +S ++    +K      +LSL     L      +   
Sbjct: 176 IYQDEFVKYGAKVIEKRMEYVKKISIILNLNYRKLFDDKKELSLQYQCHLGNVKKMTLKE 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++   K++ +    +     +L GP + D +          +  S GE+K ++  + L+
Sbjct: 236 IEDALRKRIEEKLGQELRYGFSLSGPQKDDFLFFLNSYEAK-STASQGEKKSIIFSLKLS 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              ++      +PIL++D+IS++ D ++++++   +     Q+F++ T     D+     
Sbjct: 295 EIDMVLREKKESPILIIDDISSYFDSNRKDSILNYLEKRNIQVFISSTGGLGIDT----- 349

Query: 363 KFMRISNHQA 372
           K   +   + 
Sbjct: 350 KDFYVEKGEI 359


>gi|86156433|ref|YP_463218.1| DNA replication and repair protein RecF [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|97180309|sp|Q2ILU8|RECF_ANADE RecName: Full=DNA replication and repair protein recF
 gi|85772944|gb|ABC79781.1| DNA replication and repair protein RecF [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 372

 Score =  269 bits (687), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 161/370 (43%), Gaps = 9/370 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L++ +FRN A++ L    + T+ +G+NG GKTN+LEAI FL+  +  R    A++
Sbjct: 1   MKLLSLHVQDFRNLAAVELAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +  +     EG  G+  +++++      +    +      R +D+  + L    
Sbjct: 61  VRF-GAADAAVAGDFEGPGGVRRVAVQVAAGGRTASLDGKALGSGAR-LDDYFEGLASVC 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +       RRRFLDR  F   P       ++ R +R RN  L  G  +    +
Sbjct: 119 FSPDDLLLVKAGPDGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRSGTAEVE--A 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSFC 241
           S    +   G ++ + R +++  L+  +     + +    P   L+       +      
Sbjct: 177 SFREPLVRAGARLLVRRRDLVAELAPRLRAAFAEISGPAAPEADLAYRAAGGVEVGHPEA 236

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +    A+ L    + D     T  GPH  DL++    K   + +GS G+Q+ +++ + +
Sbjct: 237 EVAARLARALETRLERDREKGFTSAGPHMDDLVLALGGKGARL-YGSQGQQRALVLALKI 295

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNE 360
           A    +    G  P+LLLD++S+ LD  K   L   +  + +Q F+T TD+ + + +   
Sbjct: 296 AEIENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTTTDRRLIEPAAGP 355

Query: 361 TAKFMRISNH 370
              F  + + 
Sbjct: 356 DTAFYEVRSG 365


>gi|71280559|ref|YP_266785.1| DNA replication and repair protein RecF [Colwellia psychrerythraea
           34H]
 gi|123634297|sp|Q48AS5|RECF_COLP3 RecName: Full=DNA replication and repair protein recF
 gi|71146299|gb|AAZ26772.1| DNA replication and repair protein RecF [Colwellia psychrerythraea
           34H]
          Length = 377

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 84/384 (21%), Positives = 164/384 (42%), Gaps = 27/384 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L    FRN +S+ +    +   F+G+NG GK+++LEA+ FL  G+ FR +    +
Sbjct: 1   MSVARLTTYNFRNLSSVAIDLHPKLNFFIGNNGSGKSSLLEALFFLGHGKSFRTSKVEHL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               + +F  +   V       D+ + L       V  ++IN      + EL K++ +  
Sbjct: 61  ACYETDNFVVSIKDVN------DLQLGLSKNLQTGVTLIKINGERHARLSELAKNIAVQI 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P   ++F G   ERRRF++  +F +     ++  +F R+++ RN  +     D +   
Sbjct: 115 VTPESFKLFFGGPKERRRFIELGMFHVKHDSSKQWREFNRVLKQRNACIRH-NLDKATFD 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
                  +L  ++   R + I  L S +  Y  +   P+I   +T      + Q     K
Sbjct: 174 YWTGLFCQLSEQVAEVRSQYITNLISEL-PYWLEILLPNIADKVTVQYLQGWPQ-----K 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +     L D  + +     ++ G H+ D+      K    +  S G+QK+ L+ +  A A
Sbjct: 228 KNLMDSLNDSHEREQAFGYSIYGAHKFDVKFLIA-KQALESQLSRGQQKLFLLALTFAQA 286

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE---- 360
           +LI+      PILL+D+I A LD + R +L + ++ +  Q+ +T  ++ V     +    
Sbjct: 287 KLIARVNRVKPILLIDDIGAELDINSRESLSQALSILDCQVIITAIEEGVLQPFIDDVSV 346

Query: 361 ---------TAKFMRISNHQALCI 375
                          + +   L +
Sbjct: 347 ADKESSKKTKYHMFHVKHGGILPV 370


>gi|317120852|ref|YP_004100855.1| DNA replication and repair protein RecF [Thermaerobacter
           marianensis DSM 12885]
 gi|315590832|gb|ADU50128.1| DNA replication and repair protein RecF [Thermaerobacter
           marianensis DSM 12885]
          Length = 400

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 94/379 (24%), Positives = 163/379 (43%), Gaps = 32/379 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + + +FR+Y    L  +   T+ VG NG+GKTN+LEAI F + GR  R +  AD+
Sbjct: 1   MVIRRVVLRQFRSYERATLELEPGLTLLVGPNGIGKTNLLEAIHFAATGRSPRTSRDADL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G P     + RVE  + +A              + L+++    R V +L+  L + +
Sbjct: 61  IRNGEP---VCYVRVEWDDPVAGRRAVEMAYHREQGKALRLDGRKRRRVADLHGALPVVY 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    +       RR +LDR++  + P +   + D++R++  RN+LL E   G   +S
Sbjct: 118 FAPESLALVKAGPAARRDYLDRLLVQVVPGYGPLLHDYQRVLAQRNQLLREIRAGRAAAS 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF------PHIKLSLTGFLDGK 235
             +  +  +   G  +   R  +++ L+ L+     +           +KL      DG 
Sbjct: 178 LLAIWDEPLLRHGTALRRHRQALLDELAPLVAAAAARVEAGGAVGPGEVKLGYLAG-DGP 236

Query: 236 FDQSFCALKEEYAKK-----------------LFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
            D +    +EE +                   L    + +     TL GP R D  +   
Sbjct: 237 GDAAHEPGREEPSGAPEEAGDPGQRAAGVPPSLAAWHREEIARGTTLWGPQRDDFAI-LL 295

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           D     A  S G+Q+ + + + LA   LI    G  P+LLLD++ + LD  +R  L   V
Sbjct: 296 DGRDARAFASQGQQRALALALTLAEVHLIHRRLGRWPVLLLDDVLSELDARRRRHLLETV 355

Query: 339 TDIGSQIFMTGTDKSVFDS 357
             +  Q+ +T TD+  +  
Sbjct: 356 AGLP-QVIVTATDEPAWPE 373


>gi|126657418|ref|ZP_01728577.1| recombination protein F [Cyanothece sp. CCY0110]
 gi|126621405|gb|EAZ92117.1| recombination protein F [Cyanothece sp. CCY0110]
          Length = 380

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 178/386 (46%), Gaps = 21/386 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  FRNY    L   +Q TI +G+N  GK+N+LEA+  L+  +  R     D+
Sbjct: 1   MYLKNIHLYTFRNYEEQSLNLQSQKTILLGNNAQGKSNLLEAVELLATLKSHRTNRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +       VE   G +++ I L  +  RS   L +N   +R   E   H+    
Sbjct: 61  ILEGERTG-QILGTVERKYGESELGITLRYQGRRS---LTLNHENLRRHLEFLGHINAVE 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174
                  +  G    RR +LD ++  ++P +   +  + +++R RN LL           
Sbjct: 117 FSCLDLDLVRGSPDTRRSWLDTLLIQLEPVYASIIHQYYKILRQRNALLKVIRKTIEEQE 176

Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                  + S     + Q+AE G ++   R  +I  ++ L  ++ Q+ +    +L +   
Sbjct: 177 NPSNLSAEISQLKVWDQQLAEAGTRVTRRRYRVIERITPLAQKWHQEISSGTERLEINYL 236

Query: 232 LDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            + K + +    +++ +  K+   R  +     T++GPHR D+  +  ++    ++GS G
Sbjct: 237 PNIKIENEQPQQVQQAFLDKIEQRRMAEQQLATTVVGPHRDDVEFNI-NQTPAKSYGSQG 295

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+ +++ I LA  +LI +  G  P+LLLD++ A LD +++N L  ++     Q  +T T
Sbjct: 296 QQRTLVLAIKLAELQLIEDVIGEPPLLLLDDVLAELDPNRQNKLLEVIQG-RFQTLITTT 354

Query: 351 DKSVFDS-LNETAKFMRISNHQALCI 375
               FD+    +++ M++   +   +
Sbjct: 355 YLHSFDAQWLNSSQIMKVEGGKIAQL 380


>gi|313765023|gb|EFS36387.1| recombination protein F [Propionibacterium acnes HL013PA1]
 gi|313815420|gb|EFS53134.1| recombination protein F [Propionibacterium acnes HL059PA1]
 gi|314916216|gb|EFS80047.1| recombination protein F [Propionibacterium acnes HL005PA4]
 gi|314917483|gb|EFS81314.1| recombination protein F [Propionibacterium acnes HL050PA1]
 gi|314921819|gb|EFS85650.1| recombination protein F [Propionibacterium acnes HL050PA3]
 gi|314930916|gb|EFS94747.1| recombination protein F [Propionibacterium acnes HL067PA1]
 gi|314955288|gb|EFS99693.1| recombination protein F [Propionibacterium acnes HL027PA1]
 gi|314959161|gb|EFT03263.1| recombination protein F [Propionibacterium acnes HL002PA1]
 gi|315099339|gb|EFT71315.1| recombination protein F [Propionibacterium acnes HL059PA2]
 gi|315102320|gb|EFT74296.1| recombination protein F [Propionibacterium acnes HL046PA1]
 gi|327454255|gb|EGF00910.1| recombination protein F [Propionibacterium acnes HL087PA3]
 gi|327456315|gb|EGF02970.1| recombination protein F [Propionibacterium acnes HL083PA2]
 gi|328756013|gb|EGF69629.1| recombination protein F [Propionibacterium acnes HL087PA1]
 gi|328758856|gb|EGF72472.1| recombination protein F [Propionibacterium acnes HL025PA2]
          Length = 401

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 162/392 (41%), Gaps = 27/392 (6%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175
              P+   +  G   +RR FLD +V    PR      D+ R+++ RN LL          
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYARVLKQRNALLKSLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGF 231
           G    +     + ++A +G ++  AR++ ++A+  L     ++     +        T  
Sbjct: 186 GAEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTID 245

Query: 232 LDGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           L+G +                L   +   L   R  + +   TL+GP R D+I+   +  
Sbjct: 246 LEGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 305

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V   
Sbjct: 306 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 363

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             Q+ +T    S    +    +   +   Q L
Sbjct: 364 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 393


>gi|19705418|ref|NP_602913.1| RECF protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19713411|gb|AAL94212.1| RECF protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 369

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 78/368 (21%), Positives = 160/368 (43%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  ++   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++
Sbjct: 1   MKISNISYFNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F S+ +  +       IS++       + +    N   I   D   K + I  
Sbjct: 61  IKYNFDEFISSIS-YQDYIANNKISVRF-KNIAGAKKEFFFNKKRISQTDFYGK-INIIA 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   +
Sbjct: 118 YIPEDIILINGSPKHRRDFFDIEISQIDKEYLTNLKNYDKLLKIRNKYLKENKRNSEEFA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242
             E +  +    I   R+E + +LS ++    +K       + L     LD     +   
Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKVTIEM 237

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E   +++   +  +   + +L+GPH+ D           I+  S GE+K ++  + L+
Sbjct: 238 IQESLKREISQKKYQEDKYKFSLVGPHKDDYKFLLNGHEAKIS-ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK     L+  A
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351

Query: 363 KFMRISNH 370
           K   +   
Sbjct: 352 KNFYVEKG 359


>gi|166709898|ref|ZP_02241105.1| recombination protein F [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 365

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 144/367 (39%), Gaps = 13/367 (3%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      + + G
Sbjct: 2   RLSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQG 61

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           + +        EG     + + +   R        +++   +  +  L   L +    P 
Sbjct: 62  ANNLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCSALAVVTFEPG 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
              + SG    RRRFLD  +F ++P        + R ++ RN LL +G        + + 
Sbjct: 122 SHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQG-AQPRMLDAWDH 180

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++AE G  +   R+  +  L   ++        P + LS   F  G             A
Sbjct: 181 ELAESGETLTSRRMRYLERLQDRLIPVADAI-APTLGLSALTFAPGWKRHEVS-----LA 234

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
             L   R  D  +  T  GPHR+D +  +       A  S G+ K+  +   LA A   +
Sbjct: 235 DALLLARDRDRQNGYTSQGPHRADWMPHFDVLPGKDAL-SRGQAKLTALACLLAQAEDFA 293

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF---M 365
                 P++ LD++ + LD   +  +   +    +Q+ +T T+  +   L +        
Sbjct: 294 FERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQVLITATE--IPPGLADAGALLHQF 351

Query: 366 RISNHQA 372
            + + Q 
Sbjct: 352 HVEHGQI 358


>gi|296328804|ref|ZP_06871318.1| DNA replication and repair protein RecF [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296154139|gb|EFG94943.1| DNA replication and repair protein RecF [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 369

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/368 (21%), Positives = 160/368 (43%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  ++   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++
Sbjct: 1   MKISNISYFNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F S+ +  +       IS++       + +    N   I   D   K + I  
Sbjct: 61  IKYNFDEFISSIS-YQDYIANNKISVRF-KNIAGAKKEFFFNKKRISQTDFYGK-INIIA 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   +
Sbjct: 118 YIPEDIILINGSPKHRRDFFDIEISQIDKEYLTNLKNYDKLLKIRNKYLKENKRNSEEFA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242
             E +  +    I   R+E + +LS ++    +K       + L     LD     +   
Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKVTIEM 237

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E   +++   +  +   + +L+GPH+ D           I+  S GE+K ++  + L+
Sbjct: 238 IQESLKREISQKKYQEDRYKFSLVGPHKDDYKFLLNGHEAKIS-ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK     L+  A
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351

Query: 363 KFMRISNH 370
           K   +   
Sbjct: 352 KNFYVEKG 359


>gi|296268002|ref|YP_003650634.1| DNA replication and repair protein RecF [Thermobispora bispora DSM
           43833]
 gi|296090789|gb|ADG86741.1| DNA replication and repair protein RecF [Thermobispora bispora DSM
           43833]
          Length = 401

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 96/409 (23%), Positives = 164/409 (40%), Gaps = 47/409 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + L  +   + F+G NG GKTN++EA+ +++     R A+ A +
Sbjct: 1   MYVASLSLTDFRSYAGVELELEPGVSAFIGANGQGKTNLVEALGYVATHTSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+       A V          I+LE    R+ R  ++N  ++    +    LR   
Sbjct: 61  VRHGAQRAIVRAAVVRDGRRAL---IELEINPGRANRA-RVNRALMPRPRDALGLLRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN-------------- 170
             P    +  G   ERRR+LD ++ A  PR      D+ER++R RN              
Sbjct: 117 FAPEDIALVKGDPAERRRYLDELLIARAPRFAGVRADYERVLRQRNALLRSAAAARSGRR 176

Query: 171 ---------RLLTEGYFD-SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE- 219
                         G  D  +     +A +   G ++  AR+E+++AL SL  +      
Sbjct: 177 GARRAEDEAAFAAIGAGDVLATLDVWDAHLVRHGAELTAARMELVDALRSLTAKAYAALA 236

Query: 220 -NFPHIKLSLTGFLDGKFDQSF-----------CALKEEYAKKLFDGRKMDSMSRRTLIG 267
            +   + L            +             A+ E     L   R+ +     TL+G
Sbjct: 237 PSSGAVDLEYRSAAVDAAAAAPSTGGPGGGDRREAVAEWLRAALAQARQAELERGVTLVG 296

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           PHR DL++          + S GE     + + LA   L+    G  P+L+LD++ A LD
Sbjct: 297 PHRDDLLLTLKGMP-ARGYASHGEAWSFALALRLAAYELL-RADGGDPVLILDDVFAELD 354

Query: 328 EDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQALCI 375
            D+R  L  IV     Q+ +T      V D L  +     ++      +
Sbjct: 355 HDRRRRLAEIVAPAE-QVLITAAVPDDVPDEL--SGARFDVTGGCVTRV 400


>gi|291531946|emb|CBK97531.1| recF protein [Eubacterium siraeum 70/3]
          Length = 377

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 164/385 (42%), Gaps = 32/385 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK L +  FRN       F     +  G+N  GKTN+ EAIS L  G  FR +  +  
Sbjct: 1   MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAIS-LCMGPSFRTSRQSSY 59

Query: 65  TRIGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
                 +         +F+T    +  E L + +I        + + ++ N + I+   E
Sbjct: 60  IPFSLDNSKEKCVIKMWFTTSFNTDS-ENLIEFTIC------NNKKEIKYNGLSIKSALE 112

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L   L+    +P    +  G+   RR +LD +     P H +++  + + ++ +N LL  
Sbjct: 113 LYGVLKYVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFG 172

Query: 176 GYFDSSW------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSL 228
             F            S  + +A  G+ +   R++  + L ++  +   + +   ++ L  
Sbjct: 173 INFSDDLSVIRPQIESWNSVLAAEGLNVTYGRLKYFSLLETIASQLYNELSGGENLTLKY 232

Query: 229 TGFLDGKFD---QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
              +    +   +   +L  EY ++L +  + +   R T++G HR D+ + Y D      
Sbjct: 233 YSSIFDSTELKCEEINSLYNEYLERLNNSFQRELKMRYTVLGVHRDDMNL-YIDNNDVKE 291

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
            GS G+Q+   + + LA A +I       PI++LD++ + LD  ++  +   +  I SQ+
Sbjct: 292 FGSQGQQRSTALALKLAEAEIIRQKD-ETPIMILDDVLSELDAGRQRFVLNHI--INSQV 348

Query: 346 FMTGTDKSVFDSLNETAKFMRISNH 370
           F+T  + +    L    K  ++ N 
Sbjct: 349 FITCCNINDVKELK-NGKVWKVENG 372


>gi|167751442|ref|ZP_02423569.1| hypothetical protein EUBSIR_02438 [Eubacterium siraeum DSM 15702]
 gi|167655688|gb|EDR99817.1| hypothetical protein EUBSIR_02438 [Eubacterium siraeum DSM 15702]
          Length = 377

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 162/385 (42%), Gaps = 32/385 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK L +  FRN       F     +  G+N  GKTN+ EAIS L  G  FR +  +  
Sbjct: 1   MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAIS-LCMGPSFRTSRQSSY 59

Query: 65  TRIGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
                 +         +F+T    +  E L + +I        + + ++ N + I+   E
Sbjct: 60  IPFSLDNSKEKCVIKMWFTTSFNTDS-ENLIEFTIC------NNKKEIKYNGLAIKSALE 112

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L   L+    +P    +  G+   RR +LD +     P H +++  + + ++ +N LL  
Sbjct: 113 LYGVLKYVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFG 172

Query: 176 GYFDSSW------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSL 228
             F            S  + +A  G+ +   R++  + L ++  +   + +    +KL  
Sbjct: 173 INFGDDLSVIRPQIESWNSVLAAEGLNVTYGRLKYFSLLETIASQLYNELSGGEELKLKY 232

Query: 229 TGFLDGKFD---QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
              +    +   +    L  EY ++L    + +   R T++G HR D+ + Y D      
Sbjct: 233 YSSIFDSTELKCEEINGLYNEYLERLNSSFQRELKMRYTVLGVHRDDMNL-YIDNNDVKE 291

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
            GS G+Q+   + + LA A +I       PI++LD++ + LD  ++  +   +  I SQ+
Sbjct: 292 FGSQGQQRSTALALKLAEAEIIRQKD-ETPIMILDDVLSELDAGRQRFVLNHI--INSQV 348

Query: 346 FMTGTDKSVFDSLNETAKFMRISNH 370
           F+T  + +    L    K  ++ N 
Sbjct: 349 FITCCNINDVKELK-NGKVWKVENG 372


>gi|331007623|ref|ZP_08330765.1| DNA recombination and repair protein RecF [gamma proteobacterium
           IMCC1989]
 gi|330418563|gb|EGG93087.1| DNA recombination and repair protein RecF [gamma proteobacterium
           IMCC1989]
          Length = 378

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/376 (21%), Positives = 162/376 (43%), Gaps = 17/376 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+I   RN   + +    +  IF GDNG GKT+ILEA++ +  GR FR      +  
Sbjct: 4   LKTLSIQHLRNLNEVSIELSHKINIFYGDNGSGKTSILEAVALVGLGRSFRSHKTRSLVN 63

Query: 67  IGSPSFFSTFARVEGME---GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  + F  ++  +   G A I + ++   + +   ++++   IR    L K L + 
Sbjct: 64  HQQTQ-LTVFTHLDVSDIDVGSASIPVGVQKSRNGTG-AIRVSGETIRSAAILAKQLPLL 121

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            +     ++  G  ++RR+FLD +VF + P         ++ ++ RN LL       S  
Sbjct: 122 IINAGSFQLIEGSPVQRRQFLDWLVFHVKPEFAELWRALQKALKQRNSLLRRDKITRSDI 181

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + ++  L   I+  R E+  +L S      Q+     + + +  +     D S  A 
Sbjct: 182 KPWDHELVRLSQVIDSFRSEVFLSLISCFERCGQEFAVDQLNIDMEYYRGWDKDLSIEA- 240

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L +  + D     T  GP R+D+ +    K       S G++K ++  + +A 
Sbjct: 241 ------ALENDFERDCRDGYTHQGPQRADIKIKSKSKPAVDVL-SRGQEKSLICALTIAQ 293

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETA 362
           A L   +T    + L+D+++A LD+     L + +T++ +Q+ +TG + + +F   N+  
Sbjct: 294 AHLYQQSTSGNCVFLIDDLAAELDKQHIETLTKWLTELNAQVLVTGVNKEELFSPWNKDK 353

Query: 363 K---FMRISNHQALCI 375
                  + + +   +
Sbjct: 354 TDVAVFHVKHGEVESV 369


>gi|300866238|ref|ZP_07110950.1| DNA replication and repair protein recF [Oscillatoria sp. PCC 6506]
 gi|300335757|emb|CBN56110.1| DNA replication and repair protein recF [Oscillatoria sp. PCC 6506]
          Length = 395

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/401 (21%), Positives = 173/401 (43%), Gaps = 36/401 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ +++ +FRNY   +++FDA  TI VG+N  GK+N+LEA+  LS  +  R     D+
Sbjct: 1   MYLRSIHLRQFRNYRDQKVIFDAPKTILVGNNAQGKSNLLEAVELLSTLKSHRATRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             + +       A +E   G+ D+++ L  +     R + +N   +R   +    L    
Sbjct: 61  I-LDAKPIGQIDASLERQTGIIDLTLTLRNQGR---RTVGLNGEPLRRHLDFLSVLNTVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
                  +  G    RR ++DR+V  ++P +   +  + +++R RN  L      +    
Sbjct: 117 FSSLDLDLVRGSPEHRRDWIDRLVTQLEPVYAHILQQYNQILRQRNAFLRREKEQANKGE 176

Query: 181 -------------------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
                              S  +  +AQ+A  G ++   R  ++  L  L   + +  + 
Sbjct: 177 LPTTNYQSPITNYQSPITNSELALWDAQLATAGARVIRRRDRVLERLIPLAQSWHRSISG 236

Query: 222 PHIKLSLTGFLDGKFDQSFCA------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
               L +    + +  Q   A      +++ +  K+ +    +     TL+GPHR D+  
Sbjct: 237 SMEVLDVKYIPNVEVIQELIARDRLEGVRQAFLDKIRERAIAEYYQGTTLVGPHRDDISF 296

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
              +      +GS G+Q+ +++ + LA  +LI    G  P+LLLD++ A LD +++N L 
Sbjct: 297 TINNTP-ARQYGSQGQQRTLVLALKLAELQLIEEVVGEPPLLLLDDVLAELDLNRQNQLL 355

Query: 336 RIVTDIGSQIFMTGTDKSVFDS-LNETAKFMRISNHQALCI 375
             + +   Q  +T T    FD+   +  + + +   Q   I
Sbjct: 356 ETIQE-RFQTLITTTHLGAFDAQWLQQTQILSVQAGQITQI 395


>gi|75909597|ref|YP_323893.1| recombination protein F [Anabaena variabilis ATCC 29413]
 gi|97180310|sp|Q3M7N8|RECF_ANAVT RecName: Full=DNA replication and repair protein recF
 gi|75703322|gb|ABA22998.1| DNA replication and repair protein RecF [Anabaena variabilis ATCC
           29413]
          Length = 376

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 169/375 (45%), Gaps = 13/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  FRNY   ++ F A  TI VG+N  GK+N+LEA+  L+  R  R A   D+
Sbjct: 1   MYLKTLHLRHFRNYYDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMARDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +   P      A +E   G++D+S+ L        R + +N   +R   +    L    
Sbjct: 61  VQEEEP-LAQINATLERDTGVSDLSLILRRNGR---RTVALNGESLRRQMDFLGVLNAVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FD 179
                  +  G    RR +LD ++  ++P +   +  + +++R RN  L +         
Sbjct: 117 FSSLDLELVRGSPEVRRNWLDTLLIQLEPVYAHILQQYNQVLRQRNAYLKKLQDSALTTQ 176

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            S  +  +AQ+   G K+   R   +  L+ L   +    +     L ++   + +  Q+
Sbjct: 177 DSALAIWDAQLVTTGTKVIRRRDRALARLAPLATAWHTSISGSTEVLQISYTPNVQLMQN 236

Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +++ +  +L      +     TL+GPHR ++ +   ++     +GS G+Q+ +++ 
Sbjct: 237 QPEQVQQAFLSQLQQRAVPEMYRGTTLVGPHRDEVELTI-NQTPARQYGSQGQQRTLVLA 295

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357
           + LA  +LI       P+LLLD++ A LD  ++N L   + D   Q  +T T  S FD+ 
Sbjct: 296 LKLAELQLIEEVVKEPPLLLLDDVLAELDPSRQNQLLDTIQD-RFQTLITTTHLSSFDAQ 354

Query: 358 LNETAKFMRISNHQA 372
              +++ + +   + 
Sbjct: 355 WLNSSQILFVEQGKI 369


>gi|294505883|ref|YP_003569941.1| DNA replication and repair protein recF [Salinibacter ruber M8]
 gi|294342211|emb|CBH22989.1| DNA replication and repair protein recF [Salinibacter ruber M8]
          Length = 412

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/379 (19%), Positives = 154/379 (40%), Gaps = 16/379 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FR +A           +  G NG GKTN+LEA+ +L   + F  +     
Sbjct: 1   MILHTLRLRSFRAHAESEFDLAPSINLLYGANGAGKTNVLEAVHYLCLTKSFTASRDRYA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +P +F    R+ G      ++++L        + + +N   +  + ++   L +  
Sbjct: 61  VRKDAP-YFEIEGRI-GQVREEPMTVRLAYVPGEG-KSIFVNGAELDRLADIVGTLPVVV 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-----TEGYFD 179
             P    + +G   ERRRF++ ++      +   ++ + R  R RN +L           
Sbjct: 118 FSPEDYDLTAGGPSERRRFVNNILSQARSVYMETLMKYRRARRQRNEVLRSYKKRSAPPP 177

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK--LSLTGFLDGKFD 237
               +    ++  LG +I   R + + A +  + E  ++ +    +  +      D   D
Sbjct: 178 DELLAPWTEKLVGLGSRIVHRRQQFLQAFADDLEEAYRRIDAVAERPTIEYDTIADLAPD 237

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +  A+++ +   L   +  +     TL+GP R +L+    D  +   +GS G+ +   +
Sbjct: 238 ATPDAIEDAFRAALARKQGQERDRGTTLVGPQRDELVFRLDDLEVR-RYGSQGQHRTFAM 296

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFD 356
            + LA    +       P+LLLD+    LD ++      ++ +D   Q  +T T +  F 
Sbjct: 297 ALKLAQYFYLQQRNDTEPLLLLDDAFGKLDAERTGVFLDLLRSDAVGQSLVTATRRGPF- 355

Query: 357 SLNETAKFMRISNHQALCI 375
              E A     ++H+AL +
Sbjct: 356 ---EPALNAEPASHRALQV 371


>gi|327334561|gb|EGE76272.1| RecF protein [Propionibacterium acnes HL097PA1]
          Length = 394

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/391 (21%), Positives = 161/391 (41%), Gaps = 27/391 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   +
Sbjct: 1   MFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+           G +    + +++E    R+ R        +    E+   LR   
Sbjct: 61  VRLGADQAVVRGRVRAGADDARSLLLEVEINARRANRARIN-RAPLTRPREILGVLRTVV 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL          G
Sbjct: 120 FSPNDLAVVRGDPSDRRTFLDGLVMTRWPRMAAVKADYERVLKQRNALLKSLSGKGRSAG 179

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGFL 232
               +     + ++A +G ++  AR++ ++A+  L     ++     +        T  L
Sbjct: 180 AEIGATMDIWDDELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLATASYKSTIDL 239

Query: 233 DGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           +G +                L   +   L   R  + +   TL+GP R D+++   +   
Sbjct: 240 EGLWSPPQEGKNPEPIDRNELAHRFLAALATRRADELIRGVTLVGPQRDDIVLHIGEMPA 299

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V    
Sbjct: 300 K-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQAD 357

Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
            Q+ +T    S    +    +   +   Q L
Sbjct: 358 -QVLVTAAVASDVPEIL-RGERFDVGGGQVL 386


>gi|34763294|ref|ZP_00144252.1| DNA replication and repair protein recF [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27887042|gb|EAA24155.1| DNA replication and repair protein recF [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 369

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/368 (20%), Positives = 159/368 (43%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  +    FRN  +  +    +  +F G N  GKT++LEAI + S G  F+    +++
Sbjct: 1   MKISNITYLNFRNLENNSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F S+   +   + +A+  I +  ++    +     +       +    + I  
Sbjct: 61  IKYNFEEFISS---ISYQDYIANNKISVRFKNITGAKKEFFFNKKRISQTDFYGKVNIIA 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   +S   +
Sbjct: 118 YIPEDIILINGSPRHRRDFFDIEISQIDKEYLSNLKNYDKLLKIRNKYLKENKRNSEEFA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCA 242
             E +  +    I   R+E + +LS ++    +K       + L     LD     +   
Sbjct: 178 IYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKITVEM 237

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E   K++   +  +   + +L+GPH+ D           ++  S GE+K ++  + L+
Sbjct: 238 IQESLKKEILQKKYQEDRYKFSLVGPHKDDYKFLLNGYEAKVS-ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I       P++++D+I+++ DED+R ++         Q+ ++ TDK     L+  A
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDK-----LDIEA 351

Query: 363 KFMRISNH 370
           K   +   
Sbjct: 352 KNFYVEKG 359


>gi|89092266|ref|ZP_01165220.1| DNA replication and repair protein RecF [Oceanospirillum sp. MED92]
 gi|89083354|gb|EAR62572.1| DNA replication and repair protein RecF [Oceanospirillum sp. MED92]
          Length = 363

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 143/372 (38%), Gaps = 17/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I   RN +S+     +   I  G+NG GKT+ILEAI+ L   R FR      +
Sbjct: 1   MSISNLQIKNLRNISSISFAPSSAINIICGENGSGKTSILEAINVLGLTRSFRTNKARHL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    S    FA ++ M      S+ +E   +   R       +   +  L + + +  
Sbjct: 61  VQTEQAS-TVVFASIDPMAQGFKQSLGVERPVEGEARIRFEGGDI--DLSTLAELIPLQV 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +      +  G    RR+FLD  VF  D    +    F R+++ RN LL  G  D+    
Sbjct: 118 INSDTFMLLEGSPAVRRQFLDWGVFHADKAFIQLWRGFRRVLKQRNTLLKCGKIDNQLRQ 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSLTGFLDGKFDQSFCAL 243
             + +      ++   R+E +  L     + V +      ++L  +   D K        
Sbjct: 178 VWDREFIAFSDQLTRLRIEYLKLLKPEFDKVVSQLLGDMDVQLGFSYGWDKKR------- 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +  + L    + D     T  GP R+D+ +            S G++K+V+  + LA 
Sbjct: 231 --QLDEVLASNFERDLRQGFTGSGPQRADIKLKVDGHNAAERL-SRGQKKLVVSALKLAQ 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL---NE 360
             L     G   I L+D++ + LD        +++    +Q F+T  D S  ++      
Sbjct: 288 GALFQRMNGRPCIYLIDDLPSELDSAHGELFCKVLEQSSNQCFITCVDDSSLNAFWHSQT 347

Query: 361 TAKFMRISNHQA 372
                RI++   
Sbjct: 348 DIATFRIADGDI 359


>gi|50841500|ref|YP_054727.1| recombination protein F [Propionibacterium acnes KPA171202]
 gi|81612508|sp|Q6ABL2|RECF_PROAC RecName: Full=DNA replication and repair protein recF
 gi|50839102|gb|AAT81769.1| DNA replication and repair protein RecF [Propionibacterium acnes
           KPA171202]
          Length = 394

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 162/391 (41%), Gaps = 27/391 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   +
Sbjct: 1   MFVEHLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+           G +    + +++E    R+ R       + R  D L   LR   
Sbjct: 61  VRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTVV 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL          G
Sbjct: 120 FSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSAG 179

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGFL 232
               +     + ++A +G ++  AR++ ++A+  L     ++     +        T  L
Sbjct: 180 AEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTIDL 239

Query: 233 DGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           +G +                L   +   L   R  + +   TL+GP R D+I+   +   
Sbjct: 240 EGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMPA 299

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V    
Sbjct: 300 K-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQAD 357

Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
            Q+ +T    S    +    +   +   Q L
Sbjct: 358 -QVLVTAAVASDVPEIL-RGERFDVGGGQVL 386


>gi|51473311|ref|YP_067068.1| recombination protein F [Rickettsia typhi str. Wilmington]
 gi|81692324|sp|Q68XQ6|RECF_RICTY RecName: Full=DNA replication and repair protein recF
 gi|51459623|gb|AAU03586.1| DNA replication and repair protein RecF [Rickettsia typhi str.
           Wilmington]
          Length = 360

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 120/361 (33%), Positives = 183/361 (50%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LN+  +RN+ +L L  D    I  G+NG GKTNILEAIS   PGRG R +   D+ +
Sbjct: 6   LHSLNLENYRNFKNLELKIDNIPIILTGENGSGKTNILEAISLFYPGRGLRSSKLTDICK 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S  +    A ++   G+AD S  ++   +R  R  + N   I   +EL+K   + WL 
Sbjct: 66  T-SEDYCRVKALLQSKLGIADFSTHIKRNSNR--RITEYNASKI-ANNELSKFTSMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P M+ IF+  S +RR+FLDR+V+  D +H   +  +E  M  RN++L E   D++W   I
Sbjct: 122 PQMEGIFTSSSTDRRKFLDRIVYNFDTKHAELLNKYEYYMHERNKILAEDIRDNNWLKII 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E  MA +   I   R++ I  +   I E   +  FP   LS+ G ++ K       +   
Sbjct: 182 EENMANISNIIANNRLKTIRFMQQAIDEI--ENEFPKADLSIDGIIEQKILNVEEDIVSF 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
              +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 IITELYQTRSKDKLLGRTSFGIHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNS 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
               T   PILLLDEI  HLD+ +R  L    T +  Q+++T T+    ++    A+ ++
Sbjct: 300 TIKLTKITPILLLDEIFVHLDDKRRQYLMDFFTALNIQLWVTATNLDGIENFANKAQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|17230866|ref|NP_487414.1| recombination protein F [Nostoc sp. PCC 7120]
 gi|20978593|sp|Q8YRR9|RECF_ANASP RecName: Full=DNA replication and repair protein recF
 gi|17132469|dbj|BAB75073.1| DNA repair and genetic recombination protein [Nostoc sp. PCC 7120]
          Length = 376

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/375 (22%), Positives = 167/375 (44%), Gaps = 13/375 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  FRNY   ++ F A  TI VG+N  GK+N+LEA+  L+  R  R A   D 
Sbjct: 1   MYLKTLHLRHFRNYYDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMARDRDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +   P      A +E   G++D+S+ L        R + +N   +R   +    L    
Sbjct: 61  VQEEEP-VAQINATLERDTGVSDLSLILRRNGR---RTVALNGEPLRRQMDFLGVLNAVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-----FD 179
                  +  G    RR +LD ++  ++P +   +  + +++R RN  L +         
Sbjct: 117 FSSLDLELVRGSPEVRRNWLDTLLIQLEPVYAHILQQYNQVLRQRNAYLKKLQDSALTTQ 176

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            S  +  +AQ+   G K+   R   +  L+ L   +    +     L +    + +  ++
Sbjct: 177 DSALAIWDAQLVTTGTKVIRRRDRALARLAPLATAWHTSISGSTEVLQINYTPNVQLVKN 236

Query: 240 -FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +++ +  +L      +     TL+GPHR ++ +   ++     +GS G+Q+ +++ 
Sbjct: 237 QPEEVQQAFLSQLQQRAVPEIYRGTTLVGPHRDEVELTI-NQTPARQYGSQGQQRTLVLA 295

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS- 357
           + LA  +LI       P+LLLD++ A LD  ++N L   + D   Q  +T T  S FD+ 
Sbjct: 296 LKLAELQLIEEVVKEPPLLLLDDVLAELDPSRQNQLLDTIQD-RFQTLITTTHLSSFDAQ 354

Query: 358 LNETAKFMRISNHQA 372
              +++ + +   + 
Sbjct: 355 WLNSSQILFVEQGKI 369


>gi|254419522|ref|ZP_05033246.1| RecF/RecN/SMC N terminal domain, putative [Brevundimonas sp. BAL3]
 gi|196185699|gb|EDX80675.1| RecF/RecN/SMC N terminal domain, putative [Brevundimonas sp. BAL3]
          Length = 377

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 124/374 (33%), Positives = 197/374 (52%), Gaps = 13/374 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +++FR+YAS RL   +   +  G NG GKTN+LEAIS L+PG+G R A+ A++ R
Sbjct: 2   ITSLTLTDFRSYASARLELASGPVVLHGPNGAGKTNLLEAISLLTPGKGLRGATAAEMGR 61

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                +    +A +  ++    +   ++T    + R ++I+         L  +LR  W 
Sbjct: 62  REPGEAVGRAWAVMVELDDETRLGTGVQTAGA-ARRIVRIDGETA-QPGRLLDYLRPVWA 119

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDSS 181
            P  DR+FS    ER +F DR+VFA DP H   +  +E+ +R R RLL +       D  
Sbjct: 120 TPEQDRLFSDARAERLKFFDRLVFAADPDHAAAVSAYEKALRERLRLLNDAQDGREADPV 179

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QS 239
           W  ++EA++ E G +  +ARV  ++AL + I +  +   FP   L L G  +   +    
Sbjct: 180 WLDALEARLGEAGARAALARVAALHALQAAI-DARRDRPFPQADLGLDGPAEQMAEAGAE 238

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +     + L   R  D  + R+L GPHR+DL   + +K    A GS+GEQK +++ +
Sbjct: 239 EDEIAAAIREGLAKARARDGAAGRSLFGPHRTDLTALHREKNRPAAEGSSGEQKALVLNL 298

Query: 300 FLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
            LA    +++        P+LLLDE  AHLDE +R ALF  +  +  Q FMTGT++S+F 
Sbjct: 299 ILAQISRLAHHDAAGAARPVLLLDEAPAHLDEARRAALFDEIVALDLQAFMTGTERSLFA 358

Query: 357 SLNETAKFMRISNH 370
            L+  A+F+R++  
Sbjct: 359 GLDGRAQFVRVAGG 372


>gi|302381120|ref|YP_003816943.1| SMC domain protein [Brevundimonas subvibrioides ATCC 15264]
 gi|302191748|gb|ADK99319.1| SMC domain protein [Brevundimonas subvibrioides ATCC 15264]
          Length = 381

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 117/377 (31%), Positives = 184/377 (48%), Gaps = 15/377 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +++FR+YA+  L  +    +  G NG GKTN+LEA+S  +PG+G R A+  ++ R
Sbjct: 2   IRALTLTDFRSYAAATLSVETGPVVLHGPNGAGKTNLLEALSLFTPGKGLRAATAQEMGR 61

Query: 67  IG----SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                     ++    + G +G  D+ +    +   + R +   +        L  +LR 
Sbjct: 62  REPGETGGRAWAVALTLAGPDGD-DVRLGTGVQVAGAGRRMVRIEGETAQPGRLLDYLRP 120

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----F 178
            W  P  DR+FS    ER +F DR+VFA DP H   +  +E+ +R R RLL +G      
Sbjct: 121 VWATPEQDRLFSDARAERLKFFDRLVFAADPGHAAAVAGYEKALRERLRLLVDGAEGREA 180

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD- 237
           D  W  ++E ++ E G +   AR   +  L + I    ++  FP   L L G  +     
Sbjct: 181 DPLWLDALEVRLGETGARAASARARALGVLQAAIDARAER-PFPQADLGLDGAAETAAAN 239

Query: 238 -QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                A+     + +   R  D  + R+L GPHR+DL   + +K    A GS+GEQK ++
Sbjct: 240 GSDDEAIAAGIREGMARSRARDGAAGRSLFGPHRTDLTALHREKNRPAAEGSSGEQKALV 299

Query: 297 VGIFLAHARLISNTTG---FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           + + LA    +  T G     P+LLLDE  AHLD  +R ALF  +  +  Q FMTGT+  
Sbjct: 300 LNLILAQIGRLKATGGPTPAPPVLLLDEAPAHLDAGRRAALFDEIVALDLQAFMTGTEAD 359

Query: 354 VFDSLNETAKFMRISNH 370
           +F+ L   A F+R+   
Sbjct: 360 LFEPLRGRAAFVRVEGG 376


>gi|114568557|ref|YP_755237.1| DNA replication and repair protein RecF [Maricaulis maris MCS10]
 gi|114339019|gb|ABI64299.1| DNA replication and repair protein RecF [Maricaulis maris MCS10]
          Length = 384

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 11/369 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-TRIG 68
           L ++ FR+Y  L L          G+NG GKTN+LEAISFL+PGRG R A    V TR G
Sbjct: 17  LRLTNFRSYPDLDLELSPAPVALFGENGAGKTNLLEAISFLAPGRGMRSAGADGVATRSG 76

Query: 69  SPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           +     ++ FA  +  EG   + +        + R  +I+         L + + + WL 
Sbjct: 77  ADIAPEWAVFAEADTREGGFRLGVG---ARGSARRETRIDGEPAAQNA-LARLMPMIWLT 132

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P+ DR+F+G   +R +F DR+V A DP H      +E+    R RLL EG  D SW  +I
Sbjct: 133 PAQDRLFAGPRADRLKFFDRLVHAADPAHADAASAYEKSRTRRQRLLDEGGQDPSWLGAI 192

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA--LK 244
           E +MA  GV +  AR++ +  L   I +  +   FP   L+L G ++    +   A   +
Sbjct: 193 EVEMAGHGVAMAAARLDALIRLQGEIDQRPEGV-FPQADLALDGAVEADLAEGLTAGEAE 251

Query: 245 EEYAKKLFDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + +   L DGR+ D+ + RTL  GPHR++L+  +  K       STGEQK +++ + LA 
Sbjct: 252 DRFLAALRDGRRRDAAAGRTLTRGPHRTELLARHRAKDQPAGDCSTGEQKALILTLALAQ 311

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           AR +    G AP+LLLDE  AHLD  +R+ L R +   GSQ ++TG +K +F+   +  +
Sbjct: 312 ARALGQQWGVAPLLLLDEACAHLDALRRDGLAREILASGSQAWLTGVEKVLFEPFGDAIQ 371

Query: 364 FMRISNHQA 372
           +  +     
Sbjct: 372 YREVHEGGV 380


>gi|282853042|ref|ZP_06262379.1| DNA replication and repair protein RecF [Propionibacterium acnes
           J139]
 gi|282582495|gb|EFB87875.1| DNA replication and repair protein RecF [Propionibacterium acnes
           J139]
 gi|327328942|gb|EGE70702.1| RecF protein [Propionibacterium acnes HL103PA1]
          Length = 394

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 165/392 (42%), Gaps = 29/392 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   +
Sbjct: 1   MFVERLELVDFRSYVRADVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+           G +    + +++E    R+ R       + R  D L   LR   
Sbjct: 61  VRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTVV 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL          G
Sbjct: 120 FSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSAG 179

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
               +     + ++A +G ++  AR++ ++A+  LI     +E  P   L+   +     
Sbjct: 180 AEIGATMDIWDNELATIGAELLSARLDTLSAIMPLISTAY-REIAPANDLTTASYKSTID 238

Query: 237 DQSFCALKEE---------------YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
            +   + ++E               +   L   R  + +   TL+GP R D+I+   +  
Sbjct: 239 LEGLWSPQQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMP 298

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V   
Sbjct: 299 AK-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQA 356

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             Q+ +T    S    +    +   +   Q L
Sbjct: 357 D-QVLVTAAVASDVPEIL-RGERFDVGGGQVL 386


>gi|262066870|ref|ZP_06026482.1| RECF protein [Fusobacterium periodonticum ATCC 33693]
 gi|291379421|gb|EFE86939.1| RECF protein [Fusobacterium periodonticum ATCC 33693]
          Length = 369

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 160/368 (43%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  ++   FRN  +  +    +  +F G N  GKT++LEAI + S G  F+     ++
Sbjct: 1   MKISNISYLNFRNLENTSVELSEKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTTEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F S+ +          IS++       + +    N   I   D   K + I  
Sbjct: 61  IKYNFDEFISSIS-YSDYIANNKISVRF-KNIPGAKKEFFFNKKRISQTDFYGK-INIIA 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +  ID  +   + ++++L++ RN+ L E   ++   +
Sbjct: 118 YIPEDIILINGSPKNRRDFFDIEISQIDKEYLNNLKNYDKLLKIRNKYLKENKRNTEEFA 177

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF--LDGKFDQSFCA 242
             E +  +    I   R+E + +LS ++    +K      +L+L     LD     +   
Sbjct: 178 IYEKEFIKYASYIIFTRLEYVKSLSIILNLQYRKLFNIEQELNLKYETNLDKTGKVTIEM 237

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++E   K++   +  +   R +L+GPH+ D           I+  S GE+K ++  + L+
Sbjct: 238 IQESLQKEISQKKYQEDRYRFSLVGPHKDDYKFLLNGYEAKIS-ASQGEKKSIIFSLKLS 296

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              +I       P++++D+I+++ DE++R ++         Q+ ++ TDK     L+  A
Sbjct: 297 EIEIIKKNRKENPVVIIDDITSYFDEERRKSILEFFNKRDIQVLISSTDK-----LDIEA 351

Query: 363 KFMRISNH 370
           K   +   
Sbjct: 352 KNFYVEKG 359


>gi|291558316|emb|CBL35433.1| Recombinational DNA repair ATPase (RecF pathway) [Eubacterium
           siraeum V10Sc8a]
          Length = 377

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 163/385 (42%), Gaps = 32/385 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK L +  FRN       F     +  G+N  GKTN+ EAIS L  G  FR +  +  
Sbjct: 1   MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAIS-LCMGPSFRTSRQSSY 59

Query: 65  TRIGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
                 +         +F+T    +  E L + +I        + + ++ N + I+   E
Sbjct: 60  IPFSLDNSKEKCVIKMWFTTSFNTDS-ENLIEFTIC------NNKKEIKYNGLAIKSALE 112

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L   L+    +P    +  G+   RR +LD +     P H +++  + + ++ +N LL  
Sbjct: 113 LYGVLKYVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFG 172

Query: 176 GYFDSSW------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSL 228
             F            S  + +A  G+ +   R++  + L ++  +   + +   ++ L  
Sbjct: 173 INFGDDLSVIRPQIESWNSVLAAEGLNVTYGRLKYFSLLETIASQLYNELSGGENLTLKY 232

Query: 229 TGFLDGKFD---QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
              +    +   +    L  EY ++L +  + +   R T++G HR D+ + Y D      
Sbjct: 233 YSSIFDSTELKCEEINGLYNEYLERLNNSFQRELKMRYTVLGVHRDDMNL-YIDNNDVKE 291

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
            GS G+Q+   + + LA A +I       PI++LD++ + LD  ++  +   +  I SQ+
Sbjct: 292 FGSQGQQRSTALALKLAEAEIIRQKD-ETPIMILDDVLSELDAGRQRFVLNHI--INSQV 348

Query: 346 FMTGTDKSVFDSLNETAKFMRISNH 370
           F+T  + +    L    K  ++ N 
Sbjct: 349 FITCCNINDVKELK-NGKVWKVENG 372


>gi|289424466|ref|ZP_06426249.1| DNA replication and repair protein RecF [Propionibacterium acnes
           SK187]
 gi|289427445|ref|ZP_06429158.1| DNA replication and repair protein RecF [Propionibacterium acnes
           J165]
 gi|289155163|gb|EFD03845.1| DNA replication and repair protein RecF [Propionibacterium acnes
           SK187]
 gi|289159375|gb|EFD07566.1| DNA replication and repair protein RecF [Propionibacterium acnes
           J165]
 gi|332674402|gb|AEE71218.1| recombination protein F [Propionibacterium acnes 266]
          Length = 394

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 162/391 (41%), Gaps = 27/391 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   +
Sbjct: 1   MFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+           G +    + +++E    R+ R       + R  D L   LR   
Sbjct: 61  VRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTVV 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL          G
Sbjct: 120 FSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSAG 179

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGFL 232
               +     + ++A +G ++  AR++ ++A+  L     ++     +        T  L
Sbjct: 180 AEIGATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTIDL 239

Query: 233 DGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           +G +                L   +   L   R  + +   TL+GP R D+I+   +   
Sbjct: 240 EGLWSPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMPA 299

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V    
Sbjct: 300 K-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQAD 357

Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
            Q+ +T    S    +    +   +   Q L
Sbjct: 358 -QVLVTAAVASDVPEIL-RGERFDVGGGQVL 386


>gi|67925054|ref|ZP_00518434.1| RecF protein [Crocosphaera watsonii WH 8501]
 gi|67853101|gb|EAM48480.1| RecF protein [Crocosphaera watsonii WH 8501]
          Length = 380

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 175/386 (45%), Gaps = 21/386 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  FRNY    L F++Q TI +G+N  GK+N+LEA+  L+  +  R     D+
Sbjct: 1   MYLKNIHLYAFRNYHEQTLNFESQKTILLGNNAQGKSNLLEAVELLATLKSHRTNRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G          VE   G + + I   +   RS   L +N   +R   E   H+    
Sbjct: 61  ILEGEKKG-QILGTVERNYGESQMGITFRSPGRRS---LMLNHENLRRHLEFLGHINAVE 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174
                  +  G    RR +LD ++  ++P +   +  + +++R RN LL           
Sbjct: 117 FSCLDLELVRGSPETRRSWLDTLLIQLEPVYASIINQYNKVLRQRNALLKVIRKTVEEQT 176

Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                  + S     + Q+AE G ++   R  +I  +S L   + ++ +    KL +   
Sbjct: 177 NTDNLSAEMSQLKLWDQQLAEAGTRVTRRRNRVIERISPLAENWHKEISNGTEKLEINYL 236

Query: 232 LDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            +   D +    +++ +  K+   R  +     +++GPHR D+ +   +     ++GS G
Sbjct: 237 PNISIDREEPQEVQQAFLDKIEQRRMAEQQLATSVVGPHRDDVELKI-NHTPAKSYGSQG 295

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+ +++ I LA  +LI +  G  P+LLLD++ A LD +++N L  ++     Q  +T T
Sbjct: 296 QQRTLVLAIKLAELQLIEDVIGEPPLLLLDDVLAELDPNRQNQLLEVIQG-RFQTIITTT 354

Query: 351 DKSVFDS-LNETAKFMRISNHQALCI 375
               FD+   ++++ M++   +   +
Sbjct: 355 YLHSFDTQWLKSSQIMKVEGGKLFQM 380


>gi|262039510|ref|ZP_06012812.1| DNA replication and repair protein RecF [Leptotrichia goodfellowii
           F0264]
 gi|261746491|gb|EEY34028.1| DNA replication and repair protein RecF [Leptotrichia goodfellowii
           F0264]
          Length = 364

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 158/371 (42%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L+ S FR     +   D    +  G NG GKT+ +EA+ FL+ G+ FR     ++
Sbjct: 1   MYLKQLSYSNFRCLEDTKTELDRNFNLIYGKNGQGKTSFIEAVHFLATGKSFRTKKTKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R            +   E    ++I +    +   +   IN    + +D     L I  
Sbjct: 61  FRYNKNRVIVFGKYINKNEEENILAIDV----NEEKKDFYINRNKNKYID-YVGLLNIIS 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    I  G    RR F +  +      + + ++DFE++++ RN+L+ E        S
Sbjct: 116 FIPEDIEIIVGNPSIRRNFFNYEISQAKKDYLKSIVDFEKILKTRNKLIKEKKTREEIYS 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCA 242
               +  E G  I I R E I  +S L+    +K   P   +KL    FL     ++   
Sbjct: 176 IYNEKFMEEGTNIIIHRREFIKNISILLNLNYRKLFDPKSELKLKYDCFLGDIDKKTKEE 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +KE++++ +    + + +   +L GP + D I +   K    +  S GE+K ++  + ++
Sbjct: 236 IKEKFSENIKRKAEREKILGYSLTGPQKDDFIFELNGKNAK-SFSSQGEKKSIIFSLKVS 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              ++       P+ ++D+I+++ DE ++ ++     +   Q F+T T+      LN   
Sbjct: 295 EIDMLVKEKNEYPLFIMDDIASYFDEVRKKSILDYFINKKIQCFITSTE-----DLNIKG 349

Query: 363 KFMRISNHQAL 373
           K   I   + +
Sbjct: 350 KKFIIEKGKVI 360


>gi|145218825|ref|YP_001129534.1| DNA replication and repair protein RecF [Prosthecochloris
           vibrioformis DSM 265]
 gi|189039632|sp|A4SC23|RECF_PROVI RecName: Full=DNA replication and repair protein recF
 gi|145204989|gb|ABP36032.1| DNA replication and repair protein RecF [Chlorobium phaeovibrioides
           DSM 265]
          Length = 371

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/356 (23%), Positives = 148/356 (41%), Gaps = 15/356 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ +    FRN+ S     +    +  G NG GKT+ILE I + +  +GF  A+  + 
Sbjct: 1   MRLRSIQFENFRNHRSFSFEPEDGINLIYGQNGSGKTSILEGIHYCALTKGFVSAADGEC 60

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
               +  F   + F    G+E    +S   E     S + LQI+   ++        +  
Sbjct: 61  LSFSAGYFLLTALFESSSGIETAVRLSYTKE-----SGKKLQIDGNELKPFSLHIGSIPC 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---- 178
               P    I SG   ERRRFLD  V   D R+   ++ + RL++ RN LL +       
Sbjct: 116 ISFSPPEIVIVSGPPGERRRFLDNAVCQSDRRYLDNLLIYRRLLQQRNALLQQLSQSPGK 175

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-KLSLTGFLDGKFD 237
           D S        +A     +   RV  +      +    +  +   +  +     +    +
Sbjct: 176 DRSMLQLWSENLASSAASVTAGRVRFLAEFHPFVELLHRDLSGGQMPSIEYRSTIGRLLE 235

Query: 238 Q-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                 L+E + ++  +  + + +  +TL GPHR +L +   D   +  + S G+Q+  L
Sbjct: 236 PVPESELRERFLQRFQENEQQEILRGQTLSGPHRDEL-IFLSDGRESKRYSSQGQQRTFL 294

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + + LA  +  +   G  PI LLD+I + LD  +  A+  I+   G Q  ++  D 
Sbjct: 295 ISLKLALFQYFNEKIGETPICLLDDIFSELDGKRTAAVLDILEGCG-QTLISSADL 349


>gi|85710419|ref|ZP_01041483.1| recombinational DNA repair ATPase [Erythrobacter sp. NAP1]
 gi|85687597|gb|EAQ27602.1| recombinational DNA repair ATPase [Erythrobacter sp. NAP1]
          Length = 362

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 132/371 (35%), Positives = 190/371 (51%), Gaps = 19/371 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + +  FRN+A   L   A   + VG+NG GKTN+LEAIS LSPGRG RRA+  D+
Sbjct: 1   MALAKITLQNFRNHARSELAETAHFNLLVGENGAGKTNVLEAISLLSPGRGLRRANLTDL 60

Query: 65  TRI----GSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            R       P  F+  A  +E  +  A I    E  +  + R ++IN         L++ 
Sbjct: 61  ARKAPGDAQPGAFAIGASLIEQGQVSARIGTYTEA-ERPTRRLVRINGADA-SASALSEW 118

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             +SWL P+MD +F+  +  RRRF+DRM  AI+P H + +   E  +R RNRLL E + D
Sbjct: 119 HAVSWLTPAMDGLFTDSAGARRRFVDRMALAIEPGHAKAVNQLEIALRERNRLLEE-HGD 177

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
           + W  +IEAQ A+ G  +   R  +I  LS  +  +  +   P  +  LT    G     
Sbjct: 178 ARWLDAIEAQAAQHGSVVAANRSRLIAMLSDELSAFPPE---PFARPILTYRPGGPLAP- 233

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                EE   +    R  D  + R L GPHR +L V         A  STGEQK +L+ I
Sbjct: 234 -----EELLAEFARARPRDRAAGRALTGPHRDELEVVMMGTGQPAASSSTGEQKAMLIAI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LAH  L   ++G   +LLLDE++AHLD  +R ALF  +    +Q++MTGT+ + F  + 
Sbjct: 289 TLAHGVL--ASSGRPSVLLLDEVAAHLDPVRRKALFDRLRAGKAQVWMTGTELAPFAEIE 346

Query: 360 ETAKFMRISNH 370
           E A   R+S  
Sbjct: 347 EEAAVWRVSGG 357


>gi|260184856|ref|ZP_05762330.1| recombination protein F [Mycobacterium tuberculosis CPHL_A]
 gi|289445528|ref|ZP_06435272.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           CPHL_A]
 gi|289418486|gb|EFD15687.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           CPHL_A]
          Length = 385

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 89/362 (24%), Positives = 154/362 (42%), Gaps = 24/362 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A + L      T+FVG NG GKTN++EA+ + +     R ++ + +
Sbjct: 1   MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADSPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R+G+     ST    +G E   D+ I         V   ++N   +R   ++   LR  
Sbjct: 61  IRVGTDRAVISTIVVNDGRECAVDLEIATGR-----VNKARLNRSSVRSTRDVVGVLRAV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYF 178
              P    +  G   +RRR+LD +     P       ++ER++R R  LL          
Sbjct: 116 LFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRG 175

Query: 179 DS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG----- 230
           D          ++++AE G ++  AR++++N L+  + +  Q         S+       
Sbjct: 176 DRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMD 235

Query: 231 --FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                 + D     L       L   R  +      L+GPHR DLI+   D+       S
Sbjct: 236 VTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFAS 294

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE   + V + LA  +L+    G  P+LLLD++ A LD  +R AL     +   Q+ +T
Sbjct: 295 HGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLVT 352

Query: 349 GT 350
             
Sbjct: 353 AA 354


>gi|124009358|ref|ZP_01694036.1| DNA replication and repair protein RecF [Microscilla marina ATCC
           23134]
 gi|123985020|gb|EAY24971.1| DNA replication and repair protein RecF [Microscilla marina ATCC
           23134]
          Length = 372

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 90/382 (23%), Positives = 156/382 (40%), Gaps = 26/382 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ +N+  F+NY  L L F +     VGDNG GKTN+L+AI +LS  +G         
Sbjct: 1   MFLEKINLLNFKNYEMLDLDFSSSVNCIVGDNGSGKTNLLDAIHYLSMSKGAFGGGNTQH 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  FF      +  +   +++   +       +  ++N      + +      +  
Sbjct: 61  VLH-KEDFFMVKGVFQAKDLDYEVTCGYK---KGQAKVFKVNQKQYDKISDHIGRFPVVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+     +  S  RR+F D ++  +D  +   +I +   ++ RN LL       + D 
Sbjct: 117 IAPNDTDTITEGSELRRKFFDSIISQLDKNYLINLIQYTHHLKQRNSLLKQFAERNFVDR 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLDGKFDQ 238
           S   +   ++  LG  +   R E I   + +  E+ Q+  EN    +L            
Sbjct: 177 SLIDTYNHKLIALGKAVCDKRQEFITEFAPIFREHYQELTENKEITELVYQSQF------ 230

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               L+E YA         D   +RT  G H+ D      D  +    GS G+QK  ++ 
Sbjct: 231 ----LEEHYADDFRQALPDDLRLQRTTRGIHKDDYDFLIDDHLLR-KFGSQGQQKSYVIA 285

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS---- 353
           + LAH  +I N T   PILLLD+I   LD+ + + L R V      QIF+T         
Sbjct: 286 LKLAHFDIIKNYTFMKPILLLDDIFDKLDDKRMDKLMRKVAAHAFGQIFITDARPERTQA 345

Query: 354 VFDSLNETAKFMRISNHQALCI 375
           VF+ ++   +   I   + + +
Sbjct: 346 VFEHIDVEKRIFTIDKGEVVDV 367


>gi|315497054|ref|YP_004085858.1| DNA replication and repair protein recf [Asticcacaulis excentricus
           CB 48]
 gi|315415066|gb|ADU11707.1| DNA replication and repair protein RecF [Asticcacaulis excentricus
           CB 48]
          Length = 374

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 126/370 (34%), Positives = 189/370 (51%), Gaps = 9/370 (2%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L++++FR+Y  L +    +     G NG GKTN LEAIS L+PGRG R A+ +D+ 
Sbjct: 4   RIHALSLTDFRSYDRLDVDLSGRSLYLFGPNGAGKTNFLEAISVLNPGRGLRGAAVSDLG 63

Query: 66  RI--GSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRI 122
           R         +    VE      DI I   +       R ++I+   +     L  H+R+
Sbjct: 64  RRLPQEAKGRAWGVSVELKSAEDDIRIGTGSDPRSLEKRLVRIDQQTV-PAGRLLDHIRL 122

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P+ DRIF     ER RF DR+VFA  P H   +  +E+ +R R +LL +G  D+ W
Sbjct: 123 VWLTPAQDRIFLEARAERLRFFDRLVFAATPSHATTVSAYEKALRERLKLLVQGPADAVW 182

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             ++E ++AE G ++  AR   ++ L + I  +  +  FP   L L    +    +    
Sbjct: 183 LDALEERLAEAGSEMIGARRAALSDLQAEIEAH--ESAFPKADLGLIN--EASDARERET 238

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L     +     R  DS + R+L GPHR+DL V + +K    A  STGEQK +++ + LA
Sbjct: 239 LNTALREGFARARARDSAAGRSLFGPHRTDLSVFHREKDRPAADCSTGEQKALVLNLILA 298

Query: 303 HA-RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
              RL    +   P++LLDE++AHLD  +R ALF     +G Q   TGTD+S+FD L   
Sbjct: 299 QGSRLSRVKSAPNPVVLLDEVAAHLDPIRRAALFDETDRLGLQTLFTGTDESLFDGLAGR 358

Query: 362 AKFMRISNHQ 371
           A  +R+   Q
Sbjct: 359 ALGVRVEGGQ 368


>gi|28492970|ref|NP_787131.1| recombination protein F [Tropheryma whipplei str. Twist]
 gi|28572178|ref|NP_788958.1| DNA replication and repair protein recF [Tropheryma whipplei
           TW08/27]
 gi|51316419|sp|Q83N51|RECF_TROWT RecName: Full=DNA replication and repair protein recF
 gi|51316420|sp|Q83NZ4|RECF_TROW8 RecName: Full=DNA replication and repair protein recF
 gi|28410309|emb|CAD66695.1| DNA replication and repair protein recF [Tropheryma whipplei
           TW08/27]
 gi|28476010|gb|AAO44100.1| recF protein [Tropheryma whipplei str. Twist]
          Length = 363

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/380 (22%), Positives = 148/380 (38%), Gaps = 28/380 (7%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M N + I  +N+  FRNY    + F     +  GDNG GKTN+ EAI FLS     R   
Sbjct: 1   MQNNL-ISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLSGFGSHRTYK 59

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
              + + G        A+++   G  ++ I +      S   L+++      + +L    
Sbjct: 60  NQPLIKSGEQKA-EISAKIQSKYGTRNVYIGISCN---SNNILKVDGKP-SKLRDLVSVF 114

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGY 177
                 P    +  G    RR++LD ++    P        ++R ++ RN LL    +  
Sbjct: 115 SCVIFSPEDIDLVKGDPGHRRKYLDDIICRARPMMLDIYSAYDRTLKQRNSLLKSFRKSS 174

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
             S        ++ ELG++I  AR  ++  L+  I E+  K         L         
Sbjct: 175 CKSDLLDIWTQKLVELGLEIVNARKRLLKILNPKISEFYSKLAGVSSTAEL--------- 225

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
             FC   +         R  +     TL GPHR ++ +   +     +  S GE   + +
Sbjct: 226 --FCQSSDCLIDTFDLLRDREIEEGVTLAGPHRDNVDI-LLNSCPARSQSSQGESWTLAL 282

Query: 298 GIFLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
            + L+   L+  T       P+++LD++ AHLD  ++  L + V     Q  +T TD S 
Sbjct: 283 SMKLSLIELMRETKRLYDPDPVVILDDVFAHLDSYRKQKLAQEVFSYE-QTIVTTTDNS- 340

Query: 355 FDSLNETAKFMRISNHQALC 374
                 T++ + +   +   
Sbjct: 341 --DNYRTSQTLVVEEGKVFS 358


>gi|307295030|ref|ZP_07574872.1| DNA replication and repair protein RecF [Sphingobium
           chlorophenolicum L-1]
 gi|306879504|gb|EFN10722.1| DNA replication and repair protein RecF [Sphingobium
           chlorophenolicum L-1]
          Length = 354

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 143/368 (38%), Positives = 197/368 (53%), Gaps = 20/368 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +S+FRN+A   +V D    +  GDNG GKTNILEA+S L+PGRG R A+  D+ R
Sbjct: 2   IGRLTLSDFRNHADALIVPDHSFIVLTGDNGAGKTNILEAVSMLAPGRGLRGAALRDMAR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 F   A V+G   +    +     D R VR       V    + L  HL I WL 
Sbjct: 62  QDGTGGFGIAAEVDGA--MLGTGVLASAPDRRQVRI----GGVSSSANALADHLSIVWLT 115

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185
           P+MDR+F      RRRFLDR+  A+ P H      +E  MR RNRLL +    D SW S+
Sbjct: 116 PAMDRLFMDSPGGRRRFLDRLTLALHPAHAVHSARYEAAMRARNRLLGDLSAADPSWLSA 175

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +EAQM E G  ++ AR +++  LS+  +E      F    L+L G  D           E
Sbjct: 176 LEAQMDEHGAALSAARTDLVARLSA-ALEDQPDHPFARPLLALEGDSD-----------E 223

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             A +L   R+ D+ + R+L GPHR DL V +  KA   A  STGEQK +L+ I LAHA 
Sbjct: 224 PLALRLARERRRDAAAGRSLSGPHRRDLAVTHAAKAQAAALCSTGEQKALLLSILLAHAA 283

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L++   G  P+LLLDE++AHLD  +R ALF  + + G Q++MTGT+ S+F+ L   ++  
Sbjct: 284 LVAAHRGQPPVLLLDEVAAHLDPSRRAALFDRLRETGGQVWMTGTEDSLFNELPVASR-F 342

Query: 366 RISNHQAL 373
            ++     
Sbjct: 343 SVTAGHVF 350


>gi|325478881|gb|EGC81991.1| putative DNA replication and repair protein RecF [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 359

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 158/370 (42%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L ++ FRNY    + F+  + IF+GDN  GKTN+LE++ +L+ G  F++    D+
Sbjct: 1   MWIKDLKLNNFRNYFYQSVEFNEDYNIFIGDNAQGKTNLLESVYYLANGTSFKKIRDNDI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  S S       +       ++SI+++ +D    + + +N V      +L    +I  
Sbjct: 61  IRF-SQSQMRLKGTIRKGRSFKEVSIEVKDKD----KSIFVNGVKYDRRKDLRSLFKIVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182
             P    I       RR  +D ++  ID  ++ +  D+++++  RNRLL        +  
Sbjct: 116 FTPEDLAIIKEGPNLRRDLIDGIIEGIDFSYKAKKRDYDKILYQRNRLLKNKSSSYFNEQ 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S+ +  + +LG  I   R + +N L     E+          L +    D   D     
Sbjct: 176 LSAFDENLMKLGFSIYKTRKKFVNILEKFAREFHSSLTEGSELLEMKYLPDISADDFSS- 234

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
               Y  +   GR  D     T  G HR D+ +    K  T    S G+Q+  ++ I LA
Sbjct: 235 ----YVGEFKKGRSDDLKYLTTQRGIHRDDIEISINGKN-TKNFASQGQQRSAILNIRLA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
             +L    TG   ++L D++ + LDE +   L   +   G Q  +T T+    + +++  
Sbjct: 290 EVKLTKEVTGDEAVILFDDVFSELDEKRSLFLLENLR--GYQTIITATNTKSLEYIDKD- 346

Query: 363 KFMRISNHQA 372
           K   I +   
Sbjct: 347 KISYIVDGNI 356


>gi|87121027|ref|ZP_01076919.1| recombination protein F [Marinomonas sp. MED121]
 gi|86163865|gb|EAQ65138.1| recombination protein F [Marinomonas sp. MED121]
          Length = 375

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 168/357 (47%), Gaps = 17/357 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L+IS+ RN + ++        +  G NG GKT+ILEAI  LS GR FR   +   
Sbjct: 1   MPLQRLDISQLRNLSKVQFKPSPHVNLISGANGSGKTSILEAIHLLSLGRSFRSHKHKTY 60

Query: 65  TRIGSPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +  +      FA +E     G+   +   I L+ + D  V   +++   I+ + EL + 
Sbjct: 61  IQKETSEC-VIFALIEPVQTTGLGLSSPQPIGLKRQLD-GVLDARLSGQKIQSLVELTQA 118

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           L I  + P   R+  G    RR+FLD  VF   P        +++ ++ RN LL  G   
Sbjct: 119 LPIQLINPDAFRLLEGTPKIRRQFLDWGVFHHSPGFINAWRGWQKALKQRNSLLRRGKIS 178

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +   + + ++  LG ++N  R + + +L  +  + +   N   +++SL  F      ++
Sbjct: 179 DNLLLAFDQELIRLGSEVNQYRHDYLESLIPVFKQVLSSLNA-TLEVSLQLFQGWDAQKT 237

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                   A+ L   R  D  S  +  GP R+DL V         A  S G+QK+V+  +
Sbjct: 238 -------LAQSLDASRSRDIESGYSNTGPQRADLRVKTPTGDALDAL-SRGQQKLVVSAL 289

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
            +A  +L+   +G + + L+D++ A LD++ R+ L +++  + SQIF+T     + D
Sbjct: 290 KIAQGKLLIE-SGRSLVFLVDDLPAELDKEHRDKLCQLLEALNSQIFITSVGPELMD 345


>gi|188574273|ref|YP_001911202.1| recombination protein F [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518725|gb|ACD56670.1| DNA replication and repair RecF protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 365

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 144/367 (39%), Gaps = 13/367 (3%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            L+I   R + ++ L   +   +  GDNG GKT++LEA+  ++ GR FR      + + G
Sbjct: 2   RLSIHRLRRFQTVELHPASALNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQG 61

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
           +          EG     + + +   R        +++   +  +  L   L +    P 
Sbjct: 62  ANDLEVFVEWKEGGSAAGERTRRAGLRHSGQEWTGRLDGEDVAQLGSLCAALAVVTFEPG 121

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
              + SG    RRRFLD  +F ++P        + R ++ RN LL +G        + + 
Sbjct: 122 SHVLISGGGEPRRRFLDWGLFHVEPDFLALWRRYVRALKQRNALLKQG-AQPRMLDAWDH 180

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           ++AE G  +   R+  +  L   ++  V     P + LS   F  G             A
Sbjct: 181 ELAESGETLTSRRMRYLERLQDRLIP-VADVIAPSLGLSALTFAPGWKRHEVS-----LA 234

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
             L   R  D  +  T  GPHR+D +  +       A  S G+ K+  +   LA A   +
Sbjct: 235 DALLLARDRDRQNGYTSQGPHRADWMPHFDVLPGKDAL-SRGQAKLTALACLLAQAEDFA 293

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF---M 365
                 P++ LD++ + LD   +  +   +    +Q+ +T T+  +   L +        
Sbjct: 294 FERSEWPVIALDDLGSELDRHHQARVLHRLVSAPAQMLITATE--IPPGLADAGALLHRF 351

Query: 366 RISNHQA 372
            + + Q 
Sbjct: 352 HVEHGQV 358


>gi|77917621|ref|YP_355436.1| DNA replication and repair protein [Pelobacter carbinolicus DSM
           2380]
 gi|97180840|sp|Q3A8M6|RECF_PELCD RecName: Full=DNA replication and repair protein recF
 gi|77543704|gb|ABA87266.1| DNA replication and repair protein RecF [Pelobacter carbinolicus
           DSM 2380]
          Length = 363

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/368 (22%), Positives = 153/368 (41%), Gaps = 11/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + +  +RN  +  L  +    +  GDN  GKTN LEAI  L   + FRR    ++
Sbjct: 1   MILTRIILHNYRNIEAAELCPEENFNLLCGDNAQGKTNTLEAIYLLGHFKSFRRGRNEEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              GS        RV+G      +   +        + ++IN    R  +E+        
Sbjct: 61  I--GSAD---RHTRVQGEFLRDGLRETVSITITGDKKNIEINGKRPRQSNEMFGRFPSVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RR  LDR +    P        ++R +R RN LL  G        
Sbjct: 116 FAPEEVSLPKGFPAGRRALLDRALCQTRPSFLDHARAYQRCLRQRNILLKSGAAAPIVL- 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               ++ + G  + +AR   ++ L  L+ +  ++       ++L    +     +   LK
Sbjct: 175 PWTEELIQTGAMVRLARRRYLDRLLPLLRDIYREICSGRESVNLVYPSES---DNLSDLK 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           EE    L   +  ++    T++GPHR D +    D+ + + +GS G+Q+  ++    A  
Sbjct: 232 EELRSNLEREQSRETKYGMTMVGPHRDDPVFMVDDRVLGL-YGSQGQQRSFILAFKTAQI 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAK 363
             +   TG+ P+LLLD++++ LD  +++  FR +     Q+F+T T+ S   +      +
Sbjct: 291 IDLEKETGYTPLLLLDDMTSELDRKRQDYFFRFLHQRQGQVFITCTELSPLQNAGFNRMR 350

Query: 364 FMRISNHQ 371
             R+   +
Sbjct: 351 TFRVREGK 358


>gi|16330164|ref|NP_440892.1| recombination protein F [Synechocystis sp. PCC 6803]
 gi|6093944|sp|P73532|RECF_SYNY3 RecName: Full=DNA replication and repair protein recF
 gi|1652652|dbj|BAA17572.1| RecF protein [Synechocystis sp. PCC 6803]
          Length = 384

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 92/380 (24%), Positives = 173/380 (45%), Gaps = 19/380 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRNY    + F AQ TI VG+N  GK+N+LEA+  L+  +  R +   ++
Sbjct: 1   MYLKKLYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLLEAVELLATLKSHRTSRDQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+ +     A +E    +A++ I L        R L+IN    R   +    L    
Sbjct: 61  VLDGAANG-QIKALLERQYSVAELEIDLRRSGR---RNLRINQNQCRRQLDFLGCLNAVE 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------- 175
                  +  G    RR++LD ++  ++P +   +  ++ +++ RN LL           
Sbjct: 117 FSCLDLDLVRGAPDCRRQWLDTLLTQLEPLYAHLLGQYQHIVKQRNALLKSLRQQWETGL 176

Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
             G   ++  S  + Q+ E+G ++   R   +  L+ L  E+  + +  +  L++T   +
Sbjct: 177 ALGEESTASLSLWDQQLVEMGTRVVRRRARGLARLAPLAQEWHGRISGGNETLTVTYQPN 236

Query: 234 GKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
             +       + + + +KL   R  +     T++GPHR ++     D      +GS G+Q
Sbjct: 237 VTWVGDDPEVVHQAFLEKLAQRRSAELHLGTTVVGPHRDEVGFVLDDTP-ARTYGSQGQQ 295

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + +++ + LA   LI    G  P+LLLD++ A LD D++  L   + D   Q  +T T  
Sbjct: 296 RTLVLALKLAELSLIETVIGEPPLLLLDDVLAELDLDRQGQLLMAIED-RFQTLITTTHL 354

Query: 353 SVFDS-LNETAKFMRISNHQ 371
           S FD     +A+ ++++  Q
Sbjct: 355 SRFDDRWRRSAQILKVNAGQ 374


>gi|284040343|ref|YP_003390273.1| DNA replication and repair protein RecF [Spirosoma linguale DSM 74]
 gi|283819636|gb|ADB41474.1| DNA replication and repair protein RecF [Spirosoma linguale DSM 74]
          Length = 368

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 80/377 (21%), Positives = 158/377 (41%), Gaps = 25/377 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L+++ F+NY  +R  F  Q  + VG NG GKTN+L+A+ FLS  +   ++  A  
Sbjct: 1   MHLEKLSLTNFKNYEDVRYTFSRQVNVLVGPNGSGKTNLLDAVYFLSLSKSAFQSQDAMS 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F       E  +    I+I L+       + L  +      + E      +  
Sbjct: 61  ILHDTDYFIIDGIFEEHDDRTVQITISLQRG---QRKVLMADKKPYERISEHIGRFPVVL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
           + P+   +    S +RR F D ++  +DP + R  + ++++++ RN LL         D+
Sbjct: 118 VAPNDTDLVREHSEDRRHFFDGVLSQLDPEYLRNYLMYQQILKQRNSLLKLFAERNQVDN 177

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               + +  + ELG KI+  R + I+        +    +    ++++    +       
Sbjct: 178 DLLDTYDEPLLELGQKIHDRRRQFIDEFLPGFRSHYAYLSDDREEVTIQYESEVSNP--- 234

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA-----ITIAHGSTGEQKVV 295
                 +A +    R+ D++ +RT +G H+ D                   GS G+QK  
Sbjct: 235 -----GFADEFRHFRRRDTVLQRTTMGIHKDDYSFIIESGNGQPPVPLKKFGSQGQQKTF 289

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGT---- 350
           ++ + LA    +       PILLLD+I   LD+ +   L + + + +  Q+F+T      
Sbjct: 290 VIALKLAQFAQLQAEKDVKPILLLDDIFDKLDDRRIGKLIQQMDEGVFGQLFITDARPER 349

Query: 351 DKSVFDSLNETAKFMRI 367
            + +  ++    KF  I
Sbjct: 350 TRQLLTNVKADIKFFEI 366


>gi|311112569|ref|YP_003983791.1| recombination protein F [Rothia dentocariosa ATCC 17931]
 gi|310944063|gb|ADP40357.1| recombination protein F [Rothia dentocariosa ATCC 17931]
          Length = 403

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 96/392 (24%), Positives = 161/392 (41%), Gaps = 30/392 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ ++R Y  L L   A  T+F+G NGVGKTNI+EAI + +     R +    +
Sbjct: 1   MYLDHLSLLDYRTYPLLNLPLSAGVTVFLGPNGVGKTNIIEAIDYTANLSSHRVSHDGPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+      + RV  + G      + E     S R ++IN        E     R   
Sbjct: 61  VRVGAS---RAYIRVRTVRGSQQTVTEFEIAPGASNR-VRINRAAPVRAREALGITRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P   ++  G    RRRF+D +  ++ P       ++ER++R RN LL       S   
Sbjct: 117 FSPEDLQLVKGEPAGRRRFIDDLAVSLRPVVSGYRQEYERILRQRNSLLKTLQRRGSSAV 176

Query: 182 -------WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---- 230
                         Q+ +LG ++  AR  ++  L   +             +S T     
Sbjct: 177 DDENAMHTLDVWSEQLTQLGAQLLAARFRVLWLLLPHLRRAYAGLTDGSKDISFTYDSTV 236

Query: 231 -------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
                   L+     S   +K+  A++L + R  +     TL+GPHR D+ +     A+ 
Sbjct: 237 FPEITERGLEHVSRMSIDDIKDAMAQRLRERRTAELERGVTLVGPHRDDITLLLGGLAVK 296

Query: 284 IAHGSTGEQKVVLVGIFLAH---ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
               S GE   V + + LA     R    + G +PIL+LD++ A LD ++R+ L  +V  
Sbjct: 297 -QFASHGESWSVALSLRLASWFVHRADDESPGSSPILILDDVFAELDSERRHRLGALVAQ 355

Query: 341 IGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
              Q+ +T    S         + +R+S   A
Sbjct: 356 AE-QVLLTSAVLSDIPEELGMYRLVRVSAAHA 386


>gi|229816228|ref|ZP_04446538.1| hypothetical protein COLINT_03278 [Collinsella intestinalis DSM
           13280]
 gi|229808236|gb|EEP44028.1| hypothetical protein COLINT_03278 [Collinsella intestinalis DSM
           13280]
          Length = 360

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 84/369 (22%), Positives = 162/369 (43%), Gaps = 14/369 (3%)

Query: 5   IKI--KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + I    L++  +R++   ++  D   T+FVG N VGKTN++EA+  L+ G  FR+ + +
Sbjct: 1   MSIAATELSVLHYRSFDDRKIELDPGITVFVGRNAVGKTNLVEALQLLTAGASFRKPTAS 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++ R G  S       +EG   L ++ +          R    N    R    +   L  
Sbjct: 61  ELLRDGEGSG-RIRLMLEGEGRLIEMGLDF----SEGKRSFTRNGKKARAAG-IRGVLPS 114

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
               P    +    +  RR  LD     ++  + + +  +ER +  RN LL +GY     
Sbjct: 115 VLFCPDHLDMVKRSASRRREALDSFGVQLNENYAKLLAAYERTVEQRNNLLRDGYA-PGL 173

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD-GKFDQSFC 241
               +  +A  G ++ + R  ++  +    +E  +    PH +  +      G+      
Sbjct: 174 LEVWDESLATTGAQLLLHRTALLERIREHFIEVYRAI-APHEEPDVRYVPSFGELAGGRE 232

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A+  ++   L   R+ +     TL+GPHR +++    D       GS G+Q+ +++   +
Sbjct: 233 AIAAQFLDALAQRREDELRRGCTLVGPHRDEVLFTI-DGRSARDFGSQGQQRSIVLAWKI 291

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNE 360
           A  ++  +  G  P+LLLD++ + LD  +R+A+   + D   Q  +T T+   F D +  
Sbjct: 292 AEVQVTRDILGRYPLLLLDDVMSELDAARRDAIVGFIAD-EIQTVITTTNLGYFADDMLA 350

Query: 361 TAKFMRISN 369
            A+ +RI +
Sbjct: 351 RARVIRIGD 359


>gi|189499003|ref|YP_001958473.1| DNA replication and repair protein RecF [Chlorobium
           phaeobacteroides BS1]
 gi|226737774|sp|B3EJI1|RECF_CHLPB RecName: Full=DNA replication and repair protein recF
 gi|189494444|gb|ACE02992.1| DNA replication and repair protein RecF [Chlorobium
           phaeobacteroides BS1]
          Length = 363

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 148/353 (41%), Gaps = 10/353 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + +  FR +  L        T+  G NG GKTNILEA+ + +  RG  R+   + 
Sbjct: 1   MRLQEIQLVNFRKHKELVFAPSEAITVVYGPNGSGKTNILEAVHYCTLARGLNRSLDREC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F       +       + +  E   ++    + IN   ++   +L   +    
Sbjct: 61  LNFDAGYFLLQGTFADDRGIELSVKVSYEKNVEKK---IFINSDELKKYSQLIGRIPCVT 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL---TEGYFDSS 181
             P    + +G   ERRRF+D  +   +  +   ++ + R+++ RN LL    E   D  
Sbjct: 118 FSPMELSLVNGSPQERRRFMDNALSQTNKSYLDDLLQYRRVLQQRNTLLGAVNEKGMDRD 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-KLSLTGFLDGKFDQ-S 239
                  ++ +L   I   R+  I  L   I    ++     +  +S         ++ +
Sbjct: 178 SLEVWTEKLTQLACSIVSERLAFIERLFVYIEPVYEQLGLGEVPGISYRSAAGRHANEIA 237

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L     ++  +    +   +++L GPHR DL+  + D  +   + S G+ +  L+ +
Sbjct: 238 PEELFSFMMQRFREIEHQEIFRKQSLAGPHRDDLVFRFNDTDVK-KYASQGQLRTFLIAV 296

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            LA   L+S+TTG  P+ LLD++ + LD  +   +   +   G Q  +T TD+
Sbjct: 297 KLALHTLVSDTTGERPLFLLDDLFSELDGTRIEKILEQLEGAG-QSIITATDR 348


>gi|241668638|ref|ZP_04756216.1| DNA replication and repair protein RecF [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254877171|ref|ZP_05249881.1| DNA replication and repair protein recF [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254843192|gb|EET21606.1| DNA replication and repair protein recF [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 349

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 90/364 (24%), Positives = 157/364 (43%), Gaps = 16/364 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN       F       VG NG GKT+ILE+I FLS  R FR +    +
Sbjct: 1   MYIANLRLQNFRNIPIKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S  F          E +  +S     R   S    ++N  + +   E+ + L I  
Sbjct: 61  INHDSDEFIVYTKAYNPDEVVISLS-----RKKNSNNISKLNSEIQKNHTEITRVLPIQL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    I +  + +R + LD   F +D    +     + L++ RN  L + Y   ++ +
Sbjct: 116 MNPESFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLIKQRNSALKQNYP-KAYIN 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            I+ ++ E    ++  R      L   I E +  +  P +KL +  F      +S     
Sbjct: 175 GIDKKLCEFADILDYKRQAYFIKLKPKIYEVLS-QFNPDLKLDIDYFRGWNSHKS----- 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
               + L +    D+    T  GPH++D+++    K I     S G+QK+++  I LA  
Sbjct: 229 --LVQVLEESFDSDNRYNVTSHGPHKADIVLTINHKPIQDIF-SRGQQKLLICAIKLAQG 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAK 363
            + ++      I L+D+I++ LD      LF  + ++ SQ+F+T T+K+ + D LN  + 
Sbjct: 286 EIHNSENENKCIYLIDDITSELDNTHTKTLFSYLKNLKSQVFITTTEKNKIIDFLNLDSH 345

Query: 364 FMRI 367
            + I
Sbjct: 346 IIEI 349


>gi|255326479|ref|ZP_05367561.1| DNA replication and repair protein RecF [Rothia mucilaginosa ATCC
           25296]
 gi|255296519|gb|EET75854.1| DNA replication and repair protein RecF [Rothia mucilaginosa ATCC
           25296]
          Length = 409

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 88/388 (22%), Positives = 155/388 (39%), Gaps = 26/388 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  +++ ++R YA L L   A  T+F+G NGVGKTNI+EAI + +     R +    +
Sbjct: 1   MYIDHISLLDYRTYALLSLPLSAGVTVFLGSNGVGKTNIVEAIDYAASLSSHRVSHDGPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+      + R   + G      + E    +S R ++IN        E     R   
Sbjct: 61  VRAGAS---RAYIRTRTVRGSQQTVTEFEIAPGQSNR-VRINRAAPVRAKEALGIARTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P   ++  G    RRRF+D +  ++ P       ++ER++R RN LL      +    
Sbjct: 117 FSPEDLQLVKGDPAGRRRFVDDLASSLRPVVSGYRSEYERILRQRNSLLKSMQRKARDEN 176

Query: 181 --SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-------- 230
             S  S  + Q++ LG ++  AR  ++      +            ++            
Sbjct: 177 ALSTLSVWDEQLSTLGAQLLSARFRLLQRFLPQLRRAYAGLTDGSKEVGFNYESTVFSSM 236

Query: 231 ---FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
               ++         LKE   +   + R+ +     TL+GPHR D+ +      +     
Sbjct: 237 GERSIEHAALMRIEDLKEALMRGFAERRRDEIERGVTLVGPHREDITLLLGGMPVK-HFA 295

Query: 288 STGEQKVVLVGIFLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
           S GE     + + LA   +        G +PIL+LD++ A LD  +R+ L  +V D   Q
Sbjct: 296 SHGESWSFALALKLASWFVHVEDDSSAGSSPILILDDVFAELDSARRHRLGVMVADAE-Q 354

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQA 372
           + +T    S         + + ++   A
Sbjct: 355 VLITCAVLSDIPEELGDYRLVSVTVGHA 382


>gi|167644130|ref|YP_001681793.1| recombination protein F [Caulobacter sp. K31]
 gi|259563357|sp|B0T360|RECF_CAUSK RecName: Full=DNA replication and repair protein recF
 gi|167346560|gb|ABZ69295.1| SMC domain protein [Caulobacter sp. K31]
          Length = 392

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 133/385 (34%), Positives = 196/385 (50%), Gaps = 21/385 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R  +  L +++FR+Y    L  D       G NG GKTN+LEAIS LSPG+G R +S  
Sbjct: 2   SRAALLSLTLTDFRSYERATLRPDGASVYLFGANGAGKTNLLEAISLLSPGKGLRGSSLI 61

Query: 63  DVTRI--GSPS--FFSTFARVE------GMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           +V R   G  +   ++  A  E      G +    +   +E     + R ++I+   +  
Sbjct: 62  EVGRRLPGEATGRAWAVAAETEAPQTDFGQDEPVRLGTGVELAGA-ARRIVRIDGETV-P 119

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
              L  H+R  WL P+ DR+F   + ERRRF DR+VFA +P H      +++  R R RL
Sbjct: 120 PGRLADHVRPIWLTPAQDRLFLEAASERRRFFDRLVFAGEPAHAGHANAYDKAQRERMRL 179

Query: 173 LTEG-----YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
           LT+        D+ W +++EA++   G  +  AR   + AL + I     +  FP  +L+
Sbjct: 180 LTDAAESGQPADAVWLTALEARLGAAGALMANARARTLMALQAEIDSRGDR-PFPRARLA 238

Query: 228 LTGFLD--GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           LTG  +           ++   A  L   R  D  + R L GPHR DL + + DK    A
Sbjct: 239 LTGEWEKLALVGVEIAEIEARLAAALAAARPRDGAAGRALTGPHRGDLAIHHVDKDRPAA 298

Query: 286 HGSTGEQKVVLVGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
             STGEQK +++ + LA  ARL        PILLLDE++AHLD  +R AL   +T +G Q
Sbjct: 299 ECSTGEQKALILNLVLAQAARLSRAKDAPNPILLLDEVAAHLDLKRRAALADEITALGLQ 358

Query: 345 IFMTGTDKSVFDSLNETAKFMRISN 369
            F+TGTD+S+FD L   A  +R+S 
Sbjct: 359 AFLTGTDQSLFDHLKGRALGVRVSE 383


>gi|162446892|ref|YP_001620024.1| DNA replication and repair protein [Acholeplasma laidlawii PG-8A]
 gi|189039616|sp|A9NE68|RECF_ACHLI RecName: Full=DNA replication and repair protein recF
 gi|161984999|gb|ABX80648.1| DNA replication and repair protein [Acholeplasma laidlawii PG-8A]
          Length = 349

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 83/346 (23%), Positives = 151/346 (43%), Gaps = 23/346 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  FRN  + +++ +    I  G NGVGKT+ILE+I F +  +  R +   D+ +
Sbjct: 2   ITSIELRNFRNLENYKVLINKPLVIIQGLNGVGKTSILESIYFAATTKSHRSSVEKDMIQ 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              P     +A V+ +E      I L     R+     IN   +R + +    LR+    
Sbjct: 62  YDKP-----YASVKLIEDSKLHEIVLTPNGKRTT----INKSEVRKISDYIGQLRVVMFA 112

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--FDSSWCS 184
           P    +  G   ERR FLD  +  +   + R +  ++++++ RN LL +     D ++ +
Sbjct: 113 PEDLMLIKGSPSERRYFLDMELMQVSKTYLRNLNSYKKILKQRNALLKKNRNLTDYTFLN 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +  Q+ ++G++I   R + I AL+        K            F + +        K
Sbjct: 173 ILGEQLYDVGIQIFDERQKFIEALNQKFKTIQTK---------YKDF-EVEMLYEPNVTK 222

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E + K L   +K D M   T  G H+ D  + Y       +  S G  +++++ + LA  
Sbjct: 223 ENFLKHLKTKQKQDIMYETTTAGIHKDDFKLLYKGLNAKDS-ASQGTSRLIVIELKLALL 281

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
             I   T    ILLLD++ + LD +++N     ++    Q+F+T  
Sbjct: 282 EWIKEVTKTDAILLLDDVLSELDLERQNLFMSQLSK-NHQVFITTA 326


>gi|40017|emb|CAA26220.1| unnamed protein product [Bacillus subtilis]
          Length = 323

 Score =  266 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 130/326 (39%), Gaps = 14/326 (4%)

Query: 52  PGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
             +  R ++  ++ R         +A++EG     + +I ++    +  +  ++N +  +
Sbjct: 1   MAKSHRTSNDKELIRWDKD-----YAKIEGRVMKQNGAIPMQLVISKKGKKGKVNHIEQQ 55

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + +    L      P    +  G    RRRFLD  +  + P +   +  +++++  RN 
Sbjct: 56  KLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQRNH 115

Query: 172 LLT----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            L         D +    +  Q+ E+  K+ + R++    L           +    +L+
Sbjct: 116 FLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELT 175

Query: 228 LTGF--LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           L     LD         + + Y +     R+ +     TL GPHR D++     + +   
Sbjct: 176 LKYHTALDVSDPLDLSKIGDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDV-QT 234

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           +GS G+Q+   + + LA   LI    G  PILLLD++ + LD+ +++ L   +     Q 
Sbjct: 235 YGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLSELDDYRQSHLLHTIQG-RVQT 293

Query: 346 FMTGTDKSVFD-SLNETAKFMRISNH 370
           F+T T     D      A   R+ N 
Sbjct: 294 FVTTTSVDGIDHETLRQAGMFRVQNG 319


>gi|313887210|ref|ZP_07820906.1| DNA replication and repair protein RecF [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332300489|ref|YP_004442410.1| DNA replication and repair protein recF [Porphyromonas
           asaccharolytica DSM 20707]
 gi|312923439|gb|EFR34252.1| DNA replication and repair protein RecF [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|332177552|gb|AEE13242.1| DNA replication and repair protein recF [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 371

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 91/375 (24%), Positives = 155/375 (41%), Gaps = 21/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  F+N A+    F  +   F G NG+GKTN+L+AI +LS  RG    +    
Sbjct: 1   MILSSLSVINFKNVATANCHFAPKLNCFFGGNGMGKTNLLDAIHYLSVVRGHLGTTDRYA 60

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R G+        +   +G E    + I  E       + L  N  + +   +      +
Sbjct: 61  IRQGAQEAIIQGEYLWDDGQEDKISLRISTERS-----KQLSRNGRLYKRHSDHIGRYPL 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             + P   R+  G S ERRR +DR++   D  +   +I++ R +  RN +L     + + 
Sbjct: 116 VIISPHDQRLIRGGSDERRRSVDRILSQQDATYLANLINYNRALDQRNNMLRNQIHEPAL 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              +E  +A  G+ +   R   +  L     +  Q       +  L+      F     +
Sbjct: 176 MDILEETLATTGLAVTTMRQAYVEELVPTFDQIYQHLAAGVERAVLS------FSAGSAS 229

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             EE  + L +GR+ D     T  G HR D  +   +  +    GS G+ K  L+   LA
Sbjct: 230 TAEEQLRILRNGRQRDYEYGFTATGCHRDDFEMLLGEILMR-KIGSEGQNKTYLIAYKLA 288

Query: 303 HARLISNT--TGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSLN 359
             R +        AP+LLLD+I   LD D+   +  +V TD   QIF+T T++   D + 
Sbjct: 289 EYRYLQQHLTNQTAPLLLLDDIFDKLDSDRVERIIELVATDTFGQIFITDTNRKYLDEII 348

Query: 360 ETAKF----MRISNH 370
            + +      +I   
Sbjct: 349 SSKQVPYRLFQIQKG 363


>gi|119491644|ref|ZP_01623516.1| recombination protein F [Lyngbya sp. PCC 8106]
 gi|119453373|gb|EAW34537.1| recombination protein F [Lyngbya sp. PCC 8106]
          Length = 390

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 91/392 (23%), Positives = 172/392 (43%), Gaps = 30/392 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++ +FRNY   ++ FDA  TI VGDN  GK+N+LEA+  LS  +  R +   ++
Sbjct: 1   MYLKTLHLKQFRNYRDQKVAFDAPKTILVGDNAQGKSNLLEAVELLSTLKSHRVSRDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +       +E   G  ++ + L     +  R + +N   +R   +    L +  
Sbjct: 61  ILDTQDNG-QITGNLERETGHIELGLILR---SKGRRTVLLNRQSLRRQLDFLSILNVVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
                  +  G    RR ++DR++  I+P +   +  + +++R RN LL +    S    
Sbjct: 117 FSSLDLELVRGSPERRRSWIDRLLVQIEPVYAYILQQYYQVLRQRNALLKKARSQSHSPG 176

Query: 181 ----------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                     S  +  +AQ+A  G ++   R  ++  L  L   +    +     L LT 
Sbjct: 177 EEQPQKQILNSELAVWDAQLAVSGARVIRRRDRVLERLIPLAQTWHHLISGSTENLQLTY 236

Query: 231 FLDGKF---------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
             + +            S   +++ + +K+      +     TL+GPHR D+I    ++ 
Sbjct: 237 QPNVQVIAAENTRLSALSPQDVQQAFLQKISTRTLAEHQQGTTLVGPHRDDIIFTI-NQT 295

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               +GS+G+Q+ +++ + LA  +LI    G  P+LLLD++ A LD  ++N L   + D 
Sbjct: 296 PARQYGSSGQQRTLVLALKLAELQLIEAVIGEPPLLLLDDVLAELDLSRQNQLLEAIGD- 354

Query: 342 GSQIFMTGTDKSVFDS-LNETAKFMRISNHQA 372
             Q  +T T    FDS   +  + + +   + 
Sbjct: 355 RFQTLITTTHLGAFDSQWLQQTQILSVQAGKI 386


>gi|82523805|emb|CAI78548.1| DNA replication and repair protein RecF [uncultured Chloroflexi
           bacterium]
          Length = 409

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 86/404 (21%), Positives = 156/404 (38%), Gaps = 40/404 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+++ FRN+  L L       + VGDN  GKT++LEA+ +L+    F  +S   +
Sbjct: 1   MYLTHLSLTNFRNFTRLDLDVPKGSILLVGDNAQGKTSLLEAVYYLATLVSFHASSDRQL 60

Query: 65  TRIGSP----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--------- 111
                     +     A          + I+L  ++      L  N   +R         
Sbjct: 61  INFIEARQPLAVARIVADFSRGTNRHHLEIRL-IQESNGQTSLNGNSTHVRKEVLLDGVK 119

Query: 112 -VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
                          +P M  +  G   ERRR+L+  +  +   +   + ++ + +  RN
Sbjct: 120 CKASTAVGQFNAVLFLPQMLGVIEGSPEERRRYLNLALAQVIAHYPAALSEYTKALSQRN 179

Query: 171 RLLT---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            LL    E   D +     + Q+   G ++  AR+  +  L  L +   ++       L 
Sbjct: 180 ALLKLLNERQGDPAQLDYWDEQIVSNGAQLIYARIHAVQELERLAVRTHRELTRGAEVLR 239

Query: 228 LTGF----------------LDGKFDQS---FCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
           L                   LD   D+S      +++ +A+ L   R  +     T IGP
Sbjct: 240 LNYQPSYDPFPVQPGQYALPLDSPVDRSGLTLEGIQQGFAENLNKLRPEEIARGVTTIGP 299

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           HR +L     +      +GS G+ +  ++ + +A    + + +G  P+LLLDE+ A LD 
Sbjct: 300 HRDELRF-LANGIDLGTYGSRGQVRTAMLSLKIAEVGWMHHKSGQWPVLLLDEVLAELDA 358

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNETAKFMRISNHQ 371
           ++R  L   +T    Q  +T TD  +F S   E A    +   +
Sbjct: 359 NRRQDLLERLTQ-SEQALLTTTDLDLFSSEFVERATRWSVHEGR 401


>gi|256424433|ref|YP_003125086.1| DNA replication and repair protein RecF [Chitinophaga pinensis DSM
           2588]
 gi|256039341|gb|ACU62885.1| DNA replication and repair protein RecF [Chitinophaga pinensis DSM
           2588]
          Length = 360

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/367 (21%), Positives = 155/367 (42%), Gaps = 20/367 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +++ +F+NY+     F  +     G NG GKTN+L+AI ++   + +  +S A  T+
Sbjct: 4   LKKISLVQFKNYSGKSFSFHKRIVGITGRNGSGKTNLLDAIYYICFTKSYFTSSEAQNTQ 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F     R+EG         K+        +   +ND       +         + 
Sbjct: 64  YQTNGF-----RLEGFMDRDHQEGKIVCTLKDGKKEFALNDEAYERFSQHIGRYPAVMIA 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSW 182
           P    I  G S ERR++LD ++  + P +   +I ++++++ +N LL     +G    + 
Sbjct: 119 PDDAEIILGGSEERRKWLDALLCQLHPGYLDHLITYQKILQQKNTLLKTMNGQGGSQDTL 178

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               + Q+ + G  +   R   +      + +        H  +++              
Sbjct: 179 LDIFDEQLVKHGTPVFEWRRAFLPGFIQQVQKLYDYLAGKHETVNIQYQSGLH------- 231

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            ++ + + L   R  D M +RT  G H+ DL     D  +  +  S G++K  L  + LA
Sbjct: 232 -EQTFTELLAANRYKDMMMQRTTGGIHKDDLQFVLDDHPMKTS-ASQGQRKSFLFALKLA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKS-VFDSLNE 360
              +I     F P+LLLD++   LD+D+ + L  +V+  +  Q+F+T T    +  +  E
Sbjct: 290 QFEVIKEHKKFPPLLLLDDVFEKLDQDRVSRLINLVSSPVYGQVFITDTHADRILAAFKE 349

Query: 361 TAKFMRI 367
            +   ++
Sbjct: 350 NSDNFQL 356


>gi|117927214|ref|YP_871765.1| recombination protein F [Acidothermus cellulolyticus 11B]
 gi|166220694|sp|A0LQR9|RECF_ACIC1 RecName: Full=DNA replication and repair protein recF
 gi|117647677|gb|ABK51779.1| DNA replication and repair protein RecF [Acidothermus
           cellulolyticus 11B]
          Length = 371

 Score =  265 bits (678), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/361 (22%), Positives = 147/361 (40%), Gaps = 15/361 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +++FR+Y    L  D    +FVG NG GKTN++EA+ +L+  R  R A+ A +
Sbjct: 1   MYLSRLELTDFRSYRRAALELDPGVNVFVGSNGQGKTNLVEAVCYLALLRSHRTATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS          E +     I + +E    R+ R L++N    R   +L   LR+  
Sbjct: 61  VRQGSE---RAVLHGEVLTSGRRIDLDVEIVPGRANR-LRVNGHATRRARDLVGILRVVI 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-----GYFD 179
             P    +  G    RR +LD ++  + PR      ++E+ +R RN  L          D
Sbjct: 117 FAPEDLALVKGDPAARRDYLDDVLVELRPRLFAVRAEYEKALRQRNAFLRAVAQDGQQVD 176

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +         A     +  AR  +++ L+  + +     +     + L        +  
Sbjct: 177 RNSLDVWNLHFARAAAALLDARRRLVHELAPFVEKAYAAISGGSGAVRLEYRSTVPEEVL 236

Query: 240 FCALKEE----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
             A +E         L   +  +     TL+GPHR DL ++  D      + S GE    
Sbjct: 237 QDADEETRIAGILAALRKVQDAELARGLTLVGPHRDDLNLEL-DSRPARGYASHGESWSY 295

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            + + L    L+  + G  P+++LD++ A LD+ +R  L   V+     +  +  D+   
Sbjct: 296 ALALRLGAYELL-RSDGETPVMILDDVYAELDQQRRRRLTGCVSGAEQLLITSAVDEPDL 354

Query: 356 D 356
            
Sbjct: 355 P 355


>gi|237802507|ref|YP_002887701.1| recombination protein F [Chlamydia trachomatis B/Jali20/OT]
 gi|231273741|emb|CAX10521.1| DNA replication and repair protein [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 365

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 151/371 (40%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRNY  LRL    +     G N  GKTN+LEA+  LS GR FR +   D 
Sbjct: 1   MRVHSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+  FF     +E +    ++   L  + D+  + +  +   I  + EL     +  
Sbjct: 61  IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  I  G   ERRRFLD ++     ++   +  + + +  RN  +      +   S
Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQNQKA--IS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +  + +   G  +   R E    L+++            + L     L  +   +   + 
Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y ++L      D     T++GPHR +L++   D  +     S G++  +L  +  A  
Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPV-AKFSSEGQKHSLLAVLRFAEC 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             +       PIL +D+I A LD+ + + L ++   +G Q+  T T     D  + T+  
Sbjct: 293 VYLQEEFCIHPILCMDDIHACLDQQRLDQLLQLSNSLG-QVVTTST--ICPDHRSTTSCI 349

Query: 365 MRISNHQALCI 375
             ++  Q   +
Sbjct: 350 FHVTQAQVSLV 360


>gi|167628098|ref|YP_001678598.1| DNA replication and repair protein RecF [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|259563369|sp|B0U178|RECF_FRAP2 RecName: Full=DNA replication and repair protein recF
 gi|167598099|gb|ABZ88097.1| DNA replication and repair protein RecF [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 349

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 88/364 (24%), Positives = 157/364 (43%), Gaps = 16/364 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN       F       VG NG GKT+ILE+I FLS  R FR +    +
Sbjct: 1   MYIANLRLQNFRNIPIKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S  F          E +  +S     R   S    ++N  + +   E+ + L I  
Sbjct: 61  INHDSDEFIVYTKAYNPDEVVISLS-----RKKNSNNISKLNSEIQKNHTEITRVLPIQL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    I +  + +R + LD   F +D    +     + L++ RN  L + Y   ++ +
Sbjct: 116 MNPESFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLIKQRNSALKQNYP-KAYIN 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            I+ ++ E    ++  R      L   I E +  +  P +KL +  F      +S     
Sbjct: 175 GIDKKLCEFADILDYKRQAYFIKLKPKIYEVLS-QFNPDLKLDIDYFRGWNSHKS----- 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
               + L +    D+    T  GPH++D+++    K I     S G+QK+++  I LA  
Sbjct: 229 --LVQVLEESFDSDNRYNVTNHGPHKADIVLTINHKPIQDIF-SRGQQKLLICAIKLAQG 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAK 363
            + ++      I L+D+I++ LD      LF  + ++ SQ+F+T T+++ + D L+  + 
Sbjct: 286 EIHNSENENKCIYLIDDITSELDNTHTKTLFSYLKNLKSQVFITTTEENKIIDFLDLDSH 345

Query: 364 FMRI 367
            + I
Sbjct: 346 IIEI 349


>gi|28197948|ref|NP_778262.1| recombination protein F [Xylella fastidiosa Temecula1]
 gi|182680575|ref|YP_001828735.1| recombination protein F [Xylella fastidiosa M23]
 gi|32129956|sp|Q87FC4|RECF_XYLFT RecName: Full=DNA replication and repair protein recF
 gi|226737849|sp|B2I5U9|RECF_XYLF2 RecName: Full=DNA replication and repair protein recF
 gi|28056008|gb|AAO27911.1| DNA replication and repair RecF protein [Xylella fastidiosa
           Temecula1]
 gi|182630685|gb|ACB91461.1| DNA replication and repair protein RecF [Xylella fastidiosa M23]
 gi|307579029|gb|ADN62998.1| recombination protein F [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 364

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 155/374 (41%), Gaps = 20/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FR +  +          F+G+NG GKT++LEA+  +  GR FR      +
Sbjct: 1   MHITQLVLRHFRCFDVVDFFPLPGLNFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGL 60

Query: 65  TRIGSPSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            R GS +      +   A +      A +S              +++   I  +  L   
Sbjct: 61  IRHGSENLEIFVDWQETALINARRRRAGLSHY------GQEWIGRLDGQKIMHLASLCAA 114

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           L +     S  ++ +  +  RRRFLD  +F ++P        +  +++ RN LL +   +
Sbjct: 115 LAVITFESSSYQLINSNAELRRRFLDWGLFHVEPDFLDLWRRYTHVLKQRNSLLKQ-KEE 173

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +   + + +++E+G ++   R + +  L   ++  + +   P++K+    F  G     
Sbjct: 174 LAMLEAWDQKLSEVGEQLTFRRFQYLERLKQRVIPLISRIT-PNLKIHGFNFNHGWRRHE 232

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                      LF  R+ D     T +GPHRSD    +      +   S G+ K++ +  
Sbjct: 233 LP-----LIDALFISRERDYQYGYTSLGPHRSDWTPQFSSIP-GVHFLSRGQGKLITLMC 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSL 358
            LA A+   +  G  PIL LD++++ LD+  +  +  ++ +I +Q+ +TGT+        
Sbjct: 287 LLAQAQDFFDQRGEWPILALDDLASELDQKHQWRVLEMLAEIPAQVLITGTEIPQGLKPF 346

Query: 359 NETAKFMRISNHQA 372
                   + +   
Sbjct: 347 FSVGAMFHVEHGAI 360


>gi|1049325|gb|AAB51449.1| RecF [Caulobacter crescentus CB15]
          Length = 388

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 128/379 (33%), Positives = 196/379 (51%), Gaps = 17/379 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            +  L +++FR+Y   RL    +     G NG GKTN+LEAIS LSPG+G R  S A+V 
Sbjct: 5   ALLSLTLADFRSYERARLETGGRSVYLFGANGAGKTNLLEAISLLSPGKGLRGVSLAEVG 64

Query: 66  RI--GSP--SFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           R   G      ++  A V+ G +    I   +E +   + R +++    +     L  H+
Sbjct: 65  RRLPGEAVGRAWAVAAEVQSGEDAPVRIGTGVE-QGGAARRTVRLEGETV-PPGRLADHV 122

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG------RNRLLT 174
           R  WL P+ DR+F   + ERRRF DR+VFA +P H      +++  R       R R   
Sbjct: 123 RPIWLTPAQDRLFLEAASERRRFFDRLVFAGEPAHAANANGYDKAQRRAYAPACRRRRNG 182

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD- 233
               D++W +++EA++AE G  +  AR   + AL + I     +  FP  +L LTG  + 
Sbjct: 183 RAPADAAWLTALEARLAEFGALLAQARARTLLALQAEIDGRGDR-PFPLARLGLTGEWER 241

Query: 234 -GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                  F  ++ + A+ L   R  D  + R L GPHR DL + + +K    A  STGEQ
Sbjct: 242 MAVEGAPFAEIELKLAQALASARARDGAAGRALTGPHRGDLAIFHVEKDRPAAECSTGEQ 301

Query: 293 KVVLVGIFLAH-ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           K +++ + LA  ARL    +   P++LLDE++AHLD  +R AL   +T +  Q F+TGTD
Sbjct: 302 KALILNLVLAQAARLSRAESAPNPVILLDEVAAHLDLTRRAALADELTALKLQAFLTGTD 361

Query: 352 KSVFDSLNETAKFMRISNH 370
           +S+FD L   A  +R+ + 
Sbjct: 362 ESLFDHLKGRALGVRVGDA 380


>gi|119355860|ref|YP_910504.1| DNA replication and repair protein RecF [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353209|gb|ABL64080.1| DNA replication and repair protein RecF [Chlorobium
           phaeobacteroides DSM 266]
          Length = 365

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 86/351 (24%), Positives = 160/351 (45%), Gaps = 10/351 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  +  + FRNY  +    +A  T+  G NG GKTNILE I + +  +GF   + +D 
Sbjct: 1   MRLTRITYNNFRNYRKMTFEPNAGITLLYGSNGSGKTNILEGIHYCALTKGFTSIADSDC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S  +++  +   G  G +DI +++    ++  + L +N+  I+        +    
Sbjct: 61  I-FDSSDYYALQSTCLGENG-SDIEVRISFSREKG-KTLFVNNNEIKKFSNHVGTIPCIT 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS--- 181
             P    I SG   ERR+F+D ++   D ++ + ++ + R++  RN LL +     S   
Sbjct: 118 FSPPEISIVSGSPSERRKFIDNIICQSDKKYLKDLLTYRRVLLQRNALLAQISEKKSSIN 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QS 239
                   ++ L   I   R+E ++       +  +K +       +   + G++D  ++
Sbjct: 178 MLPYWSENLSVLAASIVFKRLEFLDKFIDNFRDLFKKLSINEEPGIVYRSVLGRYDNIRN 237

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L   Y +K  D  + + +  +T  GPHR DL     DK I   + S G+ +  L+G+
Sbjct: 238 IDELAALYYRKYDDNLRYELLRSQTSCGPHRDDLEFYINDKEIK-KYASQGQLRTFLIGL 296

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            LA    + +TT   PI LLD+I + LD  +   +  I+  +G Q  +T T
Sbjct: 297 KLAVYDYLFDTTHEKPICLLDDIFSELDTQRTENILSILQTLG-QSIITST 346


>gi|307825354|ref|ZP_07655573.1| DNA replication and repair protein RecF [Methylobacter
           tundripaludum SV96]
 gi|307733529|gb|EFO04387.1| DNA replication and repair protein RecF [Methylobacter
           tundripaludum SV96]
          Length = 358

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 76/374 (20%), Positives = 150/374 (40%), Gaps = 19/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I   RN     +V      + +G+N  GK+ ++EAI  L   + FR ++   V
Sbjct: 1   MSLLKLDIYGVRNIQKESIVPSPAINLIIGENASGKSTLIEAIFILGRAKSFRSSAIKSV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                     +   V+       + I+L    D     ++IN    +   +L   L +  
Sbjct: 61  INFTQNHLVVSAQTVQENGSHLHLGIQL----DGKNIEIRINQQSKQKRSDLAYALPLQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +    S  RR FLD  VF  D         F++ +  RN LL          +
Sbjct: 117 IHPKSYELLDAGSQIRREFLDWGVFNNDQNFLPAWRKFKKALSQRNALLKTRRL--EQIN 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCAL 243
             + ++   G  ++  R + +     + +E + +      + L L    D          
Sbjct: 175 VWDNELVYYGTIVDSYRQQYLEKFKPVFIEIIGRFLALDGLDLRLVSGWD---------T 225

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +E+++ L + +  D     T  GPHR D  +   ++ I     S G+ K++++ + LA 
Sbjct: 226 AKEFSRVLIEDQDKDLRYGFTHSGPHRGDFQLLVNNR-IAKDFVSRGQLKLLVMSLKLAQ 284

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE--T 361
            +L++N       +L+D+ +A LD   R  L   ++++  Q+F+T T+   F  L++   
Sbjct: 285 VQLLANEQSQTGCILIDDFAAELDVVNRAKLLHYLSEMACQVFITATETQDFGDLSQIKN 344

Query: 362 AKFMRISNHQALCI 375
            K   + +     +
Sbjct: 345 YKMFHVEHGTIKPV 358


>gi|47093015|ref|ZP_00230794.1| DNA replication and repair protein RecF [Listeria monocytogenes
           str. 4b H7858]
 gi|47018583|gb|EAL09337.1| DNA replication and repair protein RecF [Listeria monocytogenes
           str. 4b H7858]
 gi|328468326|gb|EGF39332.1| recombination protein F [Listeria monocytogenes 1816]
          Length = 326

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 131/330 (39%), Gaps = 13/330 (3%)

Query: 49  FLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            L+  +  R  +  D             A++EG       S+ LE    +  +  ++N +
Sbjct: 1   MLALAKSHRTTNDKDFIMWEKEE-----AKMEGRIAKHGQSVPLELAITQKGKRAKVNHL 55

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + + +   +L +    P    +  G    RRRFL+  +  + P +   + +++R+++ 
Sbjct: 56  EQKKLSQYVGNLNVVIFAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQ 115

Query: 169 RNRLLT----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           RN+ L     +   D      +  Q A++ + +   R + I  L +       + +    
Sbjct: 116 RNQYLKMLQMKRKVDPILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGLE 175

Query: 225 KLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            L +        +       K +  +K+   ++ +     TLIGPHR D +     + + 
Sbjct: 176 TLKIEYKASITLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQNV- 234

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
              GS G+Q+   + I LA   LI   TG  P+LLLD++ + LD+ +++ L   +     
Sbjct: 235 QDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIEGK-V 293

Query: 344 QIFMTGTDKSVFD-SLNETAKFMRISNHQA 372
           Q F+T T  S  D    + A    +     
Sbjct: 294 QTFVTTTSTSGIDHETLKQATTFYVEKGTV 323


>gi|253582582|ref|ZP_04859803.1| DNA replication and repair protein recF [Fusobacterium varium ATCC
           27725]
 gi|251835452|gb|EES63992.1| DNA replication and repair protein recF [Fusobacterium varium ATCC
           27725]
          Length = 375

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 155/370 (41%), Gaps = 13/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  +N   FRN     + F  +  +F G NG GKT++LEA+ F S G+ FR    +++
Sbjct: 1   MEILEINYVNFRNLQDGNVKFFPKMNLFYGKNGQGKTSLLEALYFNSTGKSFRTTKSSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G       +   +   G   +++K    D +       N   +   DE    L +  
Sbjct: 61  MKYGYKR-TGVYVVYKDNIGEKTLTVKFNNEDKKE---YSYNGKRV-QYDEFYGKLNVVT 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F D  +      + + + +F ++++ RN+ L E        +
Sbjct: 116 YIPEDIVLITGSPSVRRNFFDGEIAQTSSEYFQELKNFNKILKIRNKYLKEKKHKEPEFT 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCA 242
             + +  + G K+   R+E +  +S ++    +K       + +     L      S   
Sbjct: 176 IYQDEFIKYGAKVIEKRMEYVKKISIILNLNYRKLFDDKKELSIQYQCHLGNIKKMSLRE 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++   K+  +    +     +L GP + D +          +  S GE+K ++  + L+
Sbjct: 236 IEDALRKRTEEKLGQELRYGFSLSGPQKDDFLFFLNSYEAK-STASQGEKKSIIFSLKLS 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              ++      +PIL++D+IS++ D ++++++   +     Q+F++ T +     L   +
Sbjct: 295 EIDMVLREKKESPILIIDDISSYFDSNRKDSILNYLEKRNIQVFISSTGE-----LGINS 349

Query: 363 KFMRISNHQA 372
           +   +   + 
Sbjct: 350 ENFYVEKGEI 359


>gi|22299987|ref|NP_683234.1| recombination protein F [Thermosynechococcus elongatus BP-1]
 gi|51316460|sp|Q8DG79|RECF_THEEB RecName: Full=DNA replication and repair protein recF
 gi|22296172|dbj|BAC09996.1| DNA repair and genetic recombination protein [Thermosynechococcus
           elongatus BP-1]
          Length = 379

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 89/376 (23%), Positives = 176/376 (46%), Gaps = 11/376 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++  FRNY+   + F A  TI VGDN  GK+N+LEA+ +L+  +  R     D+
Sbjct: 1   MFLKSLHLRHFRNYSEQSVTFAAPKTILVGDNAQGKSNLLEAVEWLATLQSHRTHRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  S     A +E      D+++ L      S R L++N   ++   +    L    
Sbjct: 61  IQQGHESA-QIEATLERQGVPLDLAVSLRPS---SGRVLRVNGCTVKRTADFLGQLNAVE 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF---DSS 181
                  +  G    RR +LDR++  ++P + + +  +++ +R RN LL +      D +
Sbjct: 117 FSCLDLELVRGTPAIRRNWLDRILLQLEPLYSQLLQTYQKALRQRNALLKQAGSQGWDEA 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSF 240
              +   Q+   G +I   R  +I  L+ L  ++ +  +     L+L+        D + 
Sbjct: 177 LWQAWNQQLVINGTRIIRRRQRLIERLAPLAQDWHRVLSGDRETLTLSYESHVPLGDGTS 236

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            A+   +++ L   R ++ + + +L+GPHR D+      ++      S G+Q+ +++ + 
Sbjct: 237 EAIVAAFSEALATRRAIEFLQKTSLVGPHRDDVGFCLNAQS-ARQFASQGQQRTLVLALK 295

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LN 359
           LA   L+ +  G  P+LLLD++ A LD  ++  L  ++ D   Q  MT T  + F +   
Sbjct: 296 LAELALVESVVGDTPLLLLDDVLAELDLQRQGILLEVMGD-RYQTLMTTTHLAPFAAPWR 354

Query: 360 ETAKFMRISNHQALCI 375
           + A+ ++++      +
Sbjct: 355 QQAQILKVTAGTIASV 370


>gi|20806546|ref|NP_621717.1| recombinational DNA repair ATPase [Thermoanaerobacter tengcongensis
           MB4]
 gi|254478930|ref|ZP_05092292.1| RecF/RecN/SMC N terminal domain, putative [Carboxydibrachium
           pacificum DSM 12653]
 gi|51316490|sp|Q8RDL3|RECF_THETN RecName: Full=DNA replication and repair protein recF
 gi|20514983|gb|AAM23321.1| Recombinational DNA repair ATPase [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035152|gb|EEB75864.1| RecF/RecN/SMC N terminal domain, putative [Carboxydibrachium
           pacificum DSM 12653]
          Length = 364

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 152/355 (42%), Gaps = 9/355 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  FRN    +L F     +  G N  GK+N+LEAI  LS GR FR +  +++
Sbjct: 1   MYLKEIFVDNFRNLKKQKLEFCEGVNLIYGLNAQGKSNLLEAIRLLSMGRSFRGSKMSEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F+              I    +       + +++N   ++   E+  H     
Sbjct: 61  VKFDEEYFYVRGLVRSADFYEKKIEFGYKVNG---NKVIKVNGNKLKSTGEILGHFLTVI 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---SS 181
             P    I       RR++LD  +  ID  +   ++ + + +  RN LL +   +     
Sbjct: 118 FSPEDIEIIKEGPSRRRKYLDACISVIDKNYFFDLLQYNKTLSNRNSLLKKIKEEGKGED 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
                + ++AE G +I   R   +  L + + +++ + +   +++        K      
Sbjct: 178 LLEIFDEKLAEYGARIIKVRNNYLEKLKNSMSKFLMEISNEKLEIIYLNSAGVKEVHEEN 237

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            ++E+   +L     +D     T +GPHR D  +   +   +  + S G+++   + + L
Sbjct: 238 LIREKLKNRLTKSLTLDLKYLSTQVGPHREDFKI-LINGYDSRVYSSQGQKRTAALCLKL 296

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           +   ++   TG  P+LLLD++ + LD++++  + + +   G Q F+T T KS  +
Sbjct: 297 SELEILEEETGEKPVLLLDDVMSELDDNRKKYILKKLE--GFQSFITHTSKSDVE 349


>gi|148927269|ref|ZP_01810839.1| DNA replication and repair protein RecF [candidate division TM7
           genomosp. GTL1]
 gi|147887328|gb|EDK72782.1| DNA replication and repair protein RecF [candidate division TM7
           genomosp. GTL1]
          Length = 351

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 146/346 (42%), Gaps = 13/346 (3%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            L + +FR+Y    +      TI  G NG GKTN+LEA+  L+ G  FR AS  ++ +IG
Sbjct: 4   SLRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSFR-ASDQELGQIG 62

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
              ++   AR+   E     SI  E       +   ++ V  + +      L +    P 
Sbjct: 63  MD-WWRLDARLVANESR---SILFEAEKTTGRKTFILDGVKKQRLT-YQHKLPVVLFEPG 117

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+  G    RR F+D ++  ++P +   +  ++R+++ RN LL   +         + 
Sbjct: 118 DLRLLHGSPARRRLFIDTLISQLEPLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVWDV 177

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
            ++E G +I   R +    L++ + E  +        +SL       F +   ++++   
Sbjct: 178 ALSEYGARIVAERQKYSALLNASLRERYRAIAHTKDIVSLAYS----FQEGAESVQQAMV 233

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
             L      D     T +GPHR DLI    D     +  S GE +   + +      ++ 
Sbjct: 234 SALHAHHVRDKALGYTTVGPHRHDLIFSMND-VEATSIASRGETRXXXLALKFIEVEMLR 292

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
                 P+LLLD++ + LD  +R AL  +     +Q  +T T+  +
Sbjct: 293 VYRDQPPLLLLDDVFSELDSTRRMALVEV--GSSTQTVITTTNADI 336


>gi|294675560|ref|YP_003576175.1| DNA replication and repair protein RecF [Rhodobacter capsulatus SB
           1003]
 gi|294474380|gb|ADE83768.1| DNA replication and repair protein RecF [Rhodobacter capsulatus SB
           1003]
          Length = 352

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 120/363 (33%), Positives = 185/363 (50%), Gaps = 24/363 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +FR++    L  DA+     G NG GKT++LEA+S LSPGRG RRAS  ++ R
Sbjct: 2   LRDLTLLQFRSHRRAVLALDARPVALYGPNGAGKTSVLEAVSLLSPGRGLRRASAEELIR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 +   A +       D  ++       + R + I+      V  L + LR+ WLV
Sbjct: 62  RQEQVGWKIRATL------TDYEVETSALPG-ASREVLIDGKAAAQVA-LGRLLRVLWLV 113

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P+MDR++   +  RRRFLDRM  +  P H   ++ +E+ MR RNRLL +   D++W  ++
Sbjct: 114 PAMDRLWIEAAEGRRRFLDRMTLSFFPTHAEAVLAYEKAMRERNRLLKDEIRDAAWYGAL 173

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MAE G  +   R + +  L++             + L+  G              E+
Sbjct: 174 ETRMAEAGALMTAHRRQALAQLATAQAGAATAFPAADLGLTAEG-------------PED 220

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
            A  L +GR+ D  + RTL GPHR DL   Y +KAI     STGEQK +L+         
Sbjct: 221 LATALAEGRRRDMAAGRTLEGPHRVDLTAVYAEKAIPADQCSTGEQKALLIS---LLLAN 277

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
                G   +LLLDE++AHLD  +R AL+  +  + +Q+ MTGT   +FDSL E  ++ +
Sbjct: 278 ARALAGENTVLLLDEVAAHLDAGRRAALYDEICALPAQVLMTGTGAELFDSLGERGRYWQ 337

Query: 367 ISN 369
           ++ 
Sbjct: 338 VTE 340


>gi|297621405|ref|YP_003709542.1| putative DNA replication and repair protein recF [Waddlia
           chondrophila WSU 86-1044]
 gi|297376706|gb|ADI38536.1| putative DNA replication and repair protein recF [Waddlia
           chondrophila WSU 86-1044]
          Length = 346

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/353 (25%), Positives = 157/353 (44%), Gaps = 17/353 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++K L +  FR+Y   +  F  Q+ + +G N  GKT ILEAI  L  GR FR  +  ++
Sbjct: 1   MQVKALLLRNFRSYEKAQFTFGPQNNLIIGPNARGKTTILEAIYLLITGRSFRSRNLDEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G   F+     VE +    +I   +    ++  R +  N    R + +L   L+ + 
Sbjct: 61  VREGESGFY-----VEALYENQEIDHSIRFIYEKRQRQIYTNRHPCRSLSDLIGQLQGAL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           ++P   ++  G    RR FLD  +  ++P +   +  + R M+ RN LL     +     
Sbjct: 116 MLPDDVQLVKGAPSRRREFLDLQLAQMNPLYVHHLTRYSRAMQQRNTLLK--AQNEQAID 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             E +MA  G  +   R  +++ L+        + +     +SL          S   L 
Sbjct: 174 LFEKEMAASGAYLIAERKRIVDLLAQDCARVQDRLSLGKETVSLDYLA----KHSPENLS 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+Y K     RK +     +LIGPH  DL +   D+   +   S G++K +   +  A  
Sbjct: 230 EQYEKM----RKREMKMGFSLIGPHLDDLTLKLGDREARL-FASEGQKKSLTTALKFAEW 284

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
             ++  +   P++L+D++   LD  +R  L  ++ D  SQ+F+T T+   F S
Sbjct: 285 IQLNTHSDSVPLMLIDDVGVSLDGGRRERLISLL-DTFSQVFVTSTEPLNFHS 336


>gi|332668536|ref|YP_004451543.1| DNA replication and repair protein RecF [Cellulomonas fimi ATCC
           484]
 gi|332337573|gb|AEE44156.1| DNA replication and repair protein RecF [Cellulomonas fimi ATCC
           484]
          Length = 423

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/413 (22%), Positives = 163/413 (39%), Gaps = 59/413 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA + L  D   T  VG NG GKTN++EA+ +++     R  S A +
Sbjct: 1   MYVAHLSLTDFRSYAQVELPLDPGITALVGPNGQGKTNLVEAVGYVATLGSHRVPSDAAL 60

Query: 65  TRIGSPSFFSTFARVEGME--GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R G+         V  +E        +++E    ++ R         R  D L   LR 
Sbjct: 61  VRAGASRAVVRTRVVRELEPGRPRTTLVEVEVTPGKANRARVNGGSPGRARDVL-GILRT 119

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------- 174
               P    +  G    RRRFLD ++  + PR+   + D+ER++R R+ LL         
Sbjct: 120 VLFAPEDLALVKGDPDGRRRFLDDLLVQLVPRYAGTVQDYERVLRQRSALLKTAGAAMRG 179

Query: 175 -EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--- 230
             G  D       +A++A+ G ++ +AR  ++ AL+  +    ++ +    +  LT    
Sbjct: 180 GRGAADLRTLDVWDAKLAQTGAELVVARRALVAALAPQVTSAYEQVSSGQGEAVLTYRAS 239

Query: 231 --------------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
                            G    S   ++ +  + +   R+ +      L+GPHR DL++ 
Sbjct: 240 LDAALADAAAADPQAAPGDVPASPRLVETQLLEAMGRLRQKEVERGVCLVGPHRDDLVLT 299

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT-------------------------- 310
                    + S GE     + + LA   L+S                            
Sbjct: 300 LGGLPAK-GYASHGESWSFALALRLASYALLSGAAGRPGDGTGDGGADPTAELLARGADW 358

Query: 311 -TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNET 361
                P+L+LD++ A LD  +R+ L  +V     Q+ +T    + V + L   
Sbjct: 359 GPDAEPVLVLDDVFAELDTRRRDRLAELVAPAR-QVLITAAVAQDVPEPLAGA 410


>gi|324999885|ref|ZP_08120997.1| recombination protein F [Pseudonocardia sp. P1]
          Length = 398

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 91/383 (23%), Positives = 157/383 (40%), Gaps = 34/383 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++   +++FR++    L  D   T+ VG NGVGKTN++E I +L+     R +S   +
Sbjct: 1   MYLRRFAVTDFRSWPEAELELDPGVTVLVGSNGVGKTNLVEGIGYLASLGSHRVSSDTPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+        R E       + ++LE    +  R  ++N   +    ++   LR   
Sbjct: 61  IRRGAEQAV---LRGEVHHHGRKLGVELEINSGKQNRA-RVNRSPVSRPRDVLGILRSVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G   ERRRFLD ++ A  PR+     D+E+++R R+ LL           
Sbjct: 117 FAPEDLALVRGDPSERRRFLDELLVARFPRYAGVRSDYEKVLRQRSALLKSAKPALRGPR 176

Query: 179 --------------DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFP 222
                         D +     +  +A  G  +   R E++ AL+    E   +   +  
Sbjct: 177 GRARPAPADPDVPDDLTTLEVWDGHLARAGAALLAGRRELVVALAPYAREAFAQIAPSSD 236

Query: 223 HIKLSLTGFLD----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
            I L     L      +       L+    ++L + R  +      L+GPHR +L +   
Sbjct: 237 PIGLDYRSSLGPGGVAELPAPAEELEALLLERLAEVRTQEIERGVCLVGPHRDELDLALG 296

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           D      + S GE     + + LA  RL+       P+L+LD++ A LD  +R AL  +V
Sbjct: 297 DGPAK-GYASHGESWAFALALRLASYRLL-QADDVEPVLVLDDVFAELDSARRRALAGLV 354

Query: 339 TDIGSQIFMT-GTDKSVFDSLNE 360
            D   Q+ +T    + V   L+ 
Sbjct: 355 ADAE-QVLVTAAVGEDVPPELDG 376


>gi|255348438|ref|ZP_05380445.1| recombination protein F [Chlamydia trachomatis 70]
 gi|255502980|ref|ZP_05381370.1| recombination protein F [Chlamydia trachomatis 70s]
 gi|255506650|ref|ZP_05382289.1| recombination protein F [Chlamydia trachomatis D(s)2923]
 gi|296438380|gb|ADH20533.1| recombination protein F [Chlamydia trachomatis E/11023]
          Length = 365

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 152/371 (40%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRNY  LRL    +     G N  GKTN+LEA+  LS GR FR +   D 
Sbjct: 1   MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+  FF     +E +    ++   L  + D+  + +  +   I  + EL     +  
Sbjct: 61  IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  I  G   ERRRFLD ++     ++ + +  + + +  RN  +      +   S
Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTQHISLYHKALDQRNASIKAQNQKA--IS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +  + +   G  +   R E    L+++            + L     L  +   +   + 
Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y ++L      D     T++GPHR +L++   D  +     S G++  +L  +  A  
Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPV-AKFSSEGQKHSLLAVLRFAEC 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             +       PIL +D+I A LD+ + + L ++   +G Q+  T T     D  + T+  
Sbjct: 293 VYLQEEFCIHPILCMDDIHACLDQQRLDQLLQLSNSLG-QVVTTST--ICPDHRSTTSCI 349

Query: 365 MRISNHQALCI 375
             ++  Q   +
Sbjct: 350 FHVTQAQVSLV 360


>gi|328675921|gb|AEB28596.1| DNA recombination and repair protein RecF [Francisella cf. novicida
           3523]
          Length = 349

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/361 (24%), Positives = 157/361 (43%), Gaps = 15/361 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FRN       F       VG NG GKT+ILE+I FLS  R FR +    +
Sbjct: 1   MYISNLRLQNFRNIPFKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +  F              +I+I L  R   S    ++N  + +   E+ ++L I  
Sbjct: 61  VNHNADEFII----YTKAYNPDEITISLS-RKKNSNNISKLNLEIQKNHTEITRNLPIQL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    I +  + +R + LD   F +D    +     + L++ RN  L + Y   ++  
Sbjct: 116 INPESFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLIKQRNSALKQNYP-YNYIL 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           SI+ +++E    ++  R      L   + E +  E  P +KL +  F      ++     
Sbjct: 175 SIDKKLSEFAEILDHKRQAYFTKLKPKVYEILA-EFNPELKLDIEYFRGWNSHKN----- 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
               + L +    D+  + T  GPH++D+++    K I     S G+QK+++  I LA  
Sbjct: 229 --LYQVLEESFNYDNKYKITNHGPHKADIVLSVNHKPIQDIF-SRGQQKLLICAIKLAQG 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            + +       I L+D+I++ LD      LF  +  + SQ+F+T T+K+  +   +T  +
Sbjct: 286 EIHNLENYNKCIYLIDDITSELDNTHTQTLFNYLRQLKSQVFITTTEKNKINEFIDTNSY 345

Query: 365 M 365
           +
Sbjct: 346 I 346


>gi|76788787|ref|YP_327873.1| recombination protein F [Chlamydia trachomatis A/HAR-13]
 gi|237804423|ref|YP_002888577.1| recombination protein F [Chlamydia trachomatis B/TZ1A828/OT]
 gi|97180699|sp|Q3KMU7|RECF_CHLTA RecName: Full=DNA replication and repair protein recF
 gi|76167317|gb|AAX50325.1| RecF [Chlamydia trachomatis A/HAR-13]
 gi|231272723|emb|CAX09627.1| DNA replication and repair protein [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 365

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 151/371 (40%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRNY  LRL    +     G N  GKTN+LEA+  LS GR FR +   D 
Sbjct: 1   MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+  FF     +E +    ++   L  + D+  + +  +   I  + EL     +  
Sbjct: 61  IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  I  G   ERRRFLD ++     ++   +  + + +  RN  +      +   S
Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQNQKA--IS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +  + +   G  +   R E    L+++            + L     L  +   +   + 
Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y ++L      D     T++GPHR +L++   D  +     S G++  +L  +  A  
Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPV-AKFSSEGQKHSLLAVLRFAEC 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             +       PIL +D+I A LD+ + + L ++   +G Q+  T T     D  + T+  
Sbjct: 293 VYLQEEFCIHPILCMDDIHACLDQQRLDQLLQLSNSLG-QVVTTST--ICPDHRSTTSCI 349

Query: 365 MRISNHQALCI 375
             ++  Q   +
Sbjct: 350 FHVTQAQVSLV 360


>gi|289525119|emb|CBJ14590.1| DNA replication and repair protein [Chlamydia trachomatis Sweden2]
 gi|296434663|gb|ADH16841.1| recombination protein F [Chlamydia trachomatis E/150]
          Length = 365

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 151/371 (40%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRNY  LRL          G N  GKTN+LEA+  LS GR FR +   D 
Sbjct: 1   MRVLSLFLKDFRNYTDLRLELGPDMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+  FF     +E +    ++   L  + D+  + +  +   I  + EL     +  
Sbjct: 61  IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  I  G   ERRRFLD ++     ++ + +  + + +  RN  +      +   S
Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTQHISLYHKALDQRNASIKAQNQKA--IS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +  + +   G  +   R E    L+++            + L     L  +   +   + 
Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y ++L      D     T++GPHR +L++   D  +     S G++  +L  +  A  
Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPV-AKFSSEGQKHSLLAVLRFAEC 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             +       PIL +D+I A LD+ + + L ++   +G Q+  T T     D  + T+  
Sbjct: 293 VYLQEEFCIHPILCMDDIHACLDQQRLDQLLQLSNSLG-QVVTTST--ICPDHRSTTSCI 349

Query: 365 MRISNHQALCI 375
             ++  Q   +
Sbjct: 350 FHVTQAQVSLV 360


>gi|255037634|ref|YP_003088255.1| DNA replication and repair protein RecF [Dyadobacter fermentans DSM
           18053]
 gi|254950390|gb|ACT95090.1| DNA replication and repair protein RecF [Dyadobacter fermentans DSM
           18053]
          Length = 365

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/374 (20%), Positives = 152/374 (40%), Gaps = 24/374 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L ++ F++Y     VF       VG+NG GKTN+L+AI FL+  +       A  
Sbjct: 1   MWLEKLRLTYFKSYEEKAFVFGEHVNCIVGENGSGKTNLLDAIYFLTLTKSAFHNQDALG 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHLRIS 123
            R       + F  ++G+       I++     R  R + + +      + +      + 
Sbjct: 61  IRH-----INDFFLLDGVFNEHGKHIQITCSLQRGQRKVFMADKKHYDRLSDHIGLFPVV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179
            + P    +    S ERRRF D ++    P +    + + +++  RN LL       + D
Sbjct: 116 LIAPDDTDLIREGSEERRRFFDGVLGQAVPGYLTDFLQYNKILTQRNGLLKFFAERNHLD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                +    +  L  +I+  R   +     L  ++ +  +  H K+ +    +      
Sbjct: 176 EDLLETYNEPLIVLSQRIHQHRAAFMEKFVPLFYKFYEFLSSGHEKVDVIYESEV----- 230

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              +  ++  +    R  D  ++RT  G H+ + + +     +    GS G+QK  L+ +
Sbjct: 231 ---VSPDFPAEFRRNRSRDLHAQRTGKGIHKDEYVFEIDGVTLK-KFGSQGQQKSFLIAL 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKS----V 354
            LA   L+    G  PILLLD+I   LD+ + + L  ++ T   +Q+F+T         +
Sbjct: 287 KLAQFELLKEEKGKTPILLLDDIFDKLDDRRIHKLIELIDTGFLAQVFITDARPERSQRI 346

Query: 355 FDSLNETAKFMRIS 368
            + +    +F  I 
Sbjct: 347 LEHVKADVRFFEIE 360


>gi|313835166|gb|EFS72880.1| recombination protein F [Propionibacterium acnes HL037PA2]
 gi|314929142|gb|EFS92973.1| recombination protein F [Propionibacterium acnes HL044PA1]
 gi|314970909|gb|EFT15007.1| recombination protein F [Propionibacterium acnes HL037PA3]
 gi|328905789|gb|EGG25565.1| DNA replication and repair protein RecF [Propionibacterium sp. P08]
          Length = 394

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/391 (21%), Positives = 161/391 (41%), Gaps = 27/391 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR+Y  + +   A  T F+G NG GKTN++EA+ +LS     R  +   +
Sbjct: 1   MFVERLELVDFRSYVRVDVPMTAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVNNDTPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G+           G +    + +++E    R+ R        +    E+   LR   
Sbjct: 61  VRLGAGQAVVRGRVRAGADDARSLLLEVEINARRANRARIN-RAPLPRPREILGVLRTVV 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL          G
Sbjct: 120 FSPNDLTVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLAGKGRSAG 179

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK----ENFPHIKLSLTGFL 232
               +     + ++A +G ++  AR++ ++A+  L     ++     +        T  L
Sbjct: 180 AEIGATMDIWDDELATIGAELLSARLDTLSAVMPLTSAAYREVAPVNDLATASYKSTIDL 239

Query: 233 DGKFDQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           +G +                L   +   L   R  + +   TL+GP R D+++   +   
Sbjct: 240 EGLWSPPQEGKSPEPIDRNELAHRFLAALAQRRADELIRGVTLVGPQRDDIVLQIGEMPA 299

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              + S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V    
Sbjct: 300 K-GYASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDVTRRDRLAASVVQAD 357

Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
            Q+ +T    S    +    +   +   Q L
Sbjct: 358 -QVLVTAAVASDVPEIL-HGERFDVGGGQVL 386


>gi|13959485|sp|Q9KHU6|RECF_ACHLA RecName: Full=DNA replication and repair protein recF
 gi|8515413|gb|AAF75988.1|AF248639_7 RecF [Acholeplasma laidlawii PG-8A]
          Length = 349

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/346 (23%), Positives = 151/346 (43%), Gaps = 23/346 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  FRN  + +++ +    I  G NGVGKT+ILE+I F +  +  R +   D+ +
Sbjct: 2   ITSIELRNFRNLENYKVLINRPLVIIQGLNGVGKTSILESIYFAATTKSHRSSVEKDMIQ 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
              P     +A V+ +E      I L     R+     IN   +R + +    LR+    
Sbjct: 62  YDKP-----YASVKLIEDSKLHEIVLTPNGKRTT----INKSEVRKISDYIGQLRVVMFA 112

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--FDSSWCS 184
           P    +  G   ERR FLD  +  +   + R +  ++++++ RN LL +     D ++ +
Sbjct: 113 PEDLMLIKGSPSERRYFLDMELMQVSKTYLRNLNSYKKILKQRNALLKKNRNLTDYTFLN 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +  Q+ ++G++I   R + I AL+        K            F + +        K
Sbjct: 173 ILGEQLYDVGIQIFDERQKFIEALNQKFKTIQTK---------YKDF-EVEMLYEPNVTK 222

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E + K L   +K D M   T  G H+ D  + Y       +  S G  +++++ + LA  
Sbjct: 223 ENFLKHLKTKQKQDIMYETTTAGIHKDDFKLLYKGLNAKDS-ASQGTSRLIVIELKLALL 281

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
             I   T    ILLLD++ + LD +++N     ++    Q+F+T  
Sbjct: 282 EWIKEVTKTDAILLLDDVLSELDLERQNLFMSQLSK-NHQVFITTA 326


>gi|15839375|ref|NP_334412.1| recombination protein F [Mycobacterium tuberculosis CDC1551]
 gi|148821194|ref|YP_001285948.1| recombination protein F [Mycobacterium tuberculosis F11]
 gi|215405987|ref|ZP_03418168.1| recombination protein F [Mycobacterium tuberculosis 02_1987]
 gi|215413857|ref|ZP_03422522.1| recombination protein F [Mycobacterium tuberculosis 94_M4241A]
 gi|215425189|ref|ZP_03423108.1| recombination protein F [Mycobacterium tuberculosis T92]
 gi|215432908|ref|ZP_03430827.1| recombination protein F [Mycobacterium tuberculosis EAS054]
 gi|215448276|ref|ZP_03435028.1| recombination protein F [Mycobacterium tuberculosis T85]
 gi|218755719|ref|ZP_03534515.1| recombination protein F [Mycobacterium tuberculosis GM 1503]
 gi|219555774|ref|ZP_03534850.1| recombination protein F [Mycobacterium tuberculosis T17]
 gi|253796918|ref|YP_003029919.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           KZN 1435]
 gi|254233408|ref|ZP_04926734.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis C]
 gi|254366463|ref|ZP_04982507.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis str. Haarlem]
 gi|254548931|ref|ZP_05139378.1| recombination protein F [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260198987|ref|ZP_05766478.1| recombination protein F [Mycobacterium tuberculosis T46]
 gi|260203140|ref|ZP_05770631.1| recombination protein F [Mycobacterium tuberculosis K85]
 gi|289441370|ref|ZP_06431114.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           T46]
 gi|289552253|ref|ZP_06441463.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           KZN 605]
 gi|289567885|ref|ZP_06448112.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           T17]
 gi|289572579|ref|ZP_06452806.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           K85]
 gi|289747773|ref|ZP_06507151.1| recombination protein F [Mycobacterium tuberculosis 02_1987]
 gi|289748465|ref|ZP_06507843.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           T92]
 gi|289756062|ref|ZP_06515440.1| recombination protein F [Mycobacterium tuberculosis EAS054]
 gi|289760100|ref|ZP_06519478.1| recombination protein F [Mycobacterium tuberculosis T85]
 gi|289764118|ref|ZP_06523496.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis GM 1503]
 gi|294995611|ref|ZP_06801302.1| recombination protein F [Mycobacterium tuberculosis 210]
 gi|297632471|ref|ZP_06950251.1| recombination protein F [Mycobacterium tuberculosis KZN 4207]
 gi|297729440|ref|ZP_06958558.1| recombination protein F [Mycobacterium tuberculosis KZN R506]
 gi|298527401|ref|ZP_07014810.1| recF protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306778821|ref|ZP_07417158.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu002]
 gi|306782609|ref|ZP_07420931.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu003]
 gi|306786977|ref|ZP_07425299.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu004]
 gi|306791533|ref|ZP_07429835.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu005]
 gi|306795597|ref|ZP_07433899.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu006]
 gi|306801572|ref|ZP_07438240.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu008]
 gi|306805781|ref|ZP_07442449.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu007]
 gi|306970178|ref|ZP_07482839.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu009]
 gi|313656769|ref|ZP_07813649.1| recombination protein F [Mycobacterium tuberculosis KZN V2475]
 gi|13879044|gb|AAK44226.1| recF protein [Mycobacterium tuberculosis CDC1551]
 gi|124603201|gb|EAY61476.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis C]
 gi|134151975|gb|EBA44020.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis str. Haarlem]
 gi|148719721|gb|ABR04346.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis F11]
 gi|253318421|gb|ACT23024.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           KZN 1435]
 gi|289414289|gb|EFD11529.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           T46]
 gi|289436885|gb|EFD19378.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           KZN 605]
 gi|289537010|gb|EFD41588.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           K85]
 gi|289541638|gb|EFD45287.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           T17]
 gi|289688301|gb|EFD55789.1| recombination protein F [Mycobacterium tuberculosis 02_1987]
 gi|289689052|gb|EFD56481.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           T92]
 gi|289696649|gb|EFD64078.1| recombination protein F [Mycobacterium tuberculosis EAS054]
 gi|289711624|gb|EFD75640.1| DNA replication and repair protein recF (single-strand DNA binding
           protein) [Mycobacterium tuberculosis GM 1503]
 gi|289715664|gb|EFD79676.1| recombination protein F [Mycobacterium tuberculosis T85]
 gi|298497195|gb|EFI32489.1| recF protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308328158|gb|EFP17009.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu002]
 gi|308332532|gb|EFP21383.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu003]
 gi|308336275|gb|EFP25126.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu004]
 gi|308339880|gb|EFP28731.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu005]
 gi|308343893|gb|EFP32744.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu006]
 gi|308347677|gb|EFP36528.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu007]
 gi|308351595|gb|EFP40446.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu008]
 gi|308352302|gb|EFP41153.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu009]
 gi|326905762|gb|EGE52695.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           W-148]
 gi|328456709|gb|AEB02132.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           KZN 4207]
          Length = 385

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 89/362 (24%), Positives = 153/362 (42%), Gaps = 24/362 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A + L      T+FVG NG GKTN++EA+ + +     R ++   +
Sbjct: 1   MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R+G+     ST    +G E   D+ I         V   ++N   +R   ++   LR  
Sbjct: 61  IRVGTDRAVISTIVVNDGRECAVDLEIATGR-----VNKARLNRSSVRSTRDVVGVLRAV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYF 178
              P    +  G   +RRR+LD +     P       ++ER++R R  LL          
Sbjct: 116 LFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRG 175

Query: 179 DS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG----- 230
           D          ++++AE G ++  AR++++N L+  + +  Q         S+       
Sbjct: 176 DRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMD 235

Query: 231 --FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                 + D     L       L   R  +      L+GPHR DLI+   D+       S
Sbjct: 236 VTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFAS 294

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE   + V + LA  +L+    G  P+LLLD++ A LD  +R AL     +   Q+ +T
Sbjct: 295 HGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLVT 352

Query: 349 GT 350
             
Sbjct: 353 AA 354


>gi|161830866|ref|YP_001595903.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 331]
 gi|215918858|ref|NP_819059.2| DNA replication and repair protein RecF [Coxiella burnetii RSA 493]
 gi|218511878|sp|Q83FD6|RECF_COXBU RecName: Full=DNA replication and repair protein recF
 gi|226737785|sp|A9N902|RECF_COXBR RecName: Full=DNA replication and repair protein recF
 gi|161762733|gb|ABX78375.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 331]
 gi|206583742|gb|AAO89573.2| DNA replication and repair protein [Coxiella burnetii RSA 493]
          Length = 357

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 93/366 (25%), Positives = 154/366 (42%), Gaps = 15/366 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +++FRN A + +   +Q   F G NG GKT+ILE+I +LS GR FR      + +
Sbjct: 4   IGSLKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQ 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F        G +    I + +E RD    RCL+IN           K L +  L 
Sbjct: 64  DNTDRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLS 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
               R        RR+FLD ++F ++P         +R ++ RN  L          +  
Sbjct: 120 AMSHRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAALK-AKLPLGEITHW 178

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +  + E G +++  R  ++     L  + +Q +  P   L    F       S       
Sbjct: 179 DKMLVEDGERLHQLRQNVVTEFKPLFTQMLQ-QFLPAYPLIGHYFRGWSEKYS------- 230

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
             ++L    K D     T  GP R+D  +   D        S G+QK+V   +  A   L
Sbjct: 231 LMEQLQINLKQDLQRGYTQAGPQRADFRLTLGDLPAQDIL-SQGQQKLVTYALHFAQGLL 289

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +   TG +PI L+D++ A LD +KR+ +  +V  + SQ+F++G D +    L   +    
Sbjct: 290 LKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPNEI-RLPPHSTLFH 348

Query: 367 ISNHQA 372
           + + + 
Sbjct: 349 VKHGKV 354


>gi|46911667|emb|CAG18465.1| Putative RecF [Photobacterium profundum SS9]
          Length = 320

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 144/330 (43%), Gaps = 14/330 (4%)

Query: 44  LEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
           +EAI +L  GR FR    + V R      F    RV       ++ + +  + D +   +
Sbjct: 1   MEAIHYLGHGRSFRSHLTSRVIRHEQQELF-IHGRV-LTNNQLELPLGINKKRDGTT-EV 57

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           +++    + + +L + L +  + P    +  G    RR F+D  VF I+P+        +
Sbjct: 58  KVSGESGQKLSQLAQVLPLQLITPEGFELLIGGPKYRRSFIDWGVFHIEPKFYNAWSRIK 117

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           RL + RN LL          S  + ++A L  +I++ R E + A+     E  Q    P 
Sbjct: 118 RLTKQRNALLKTARSYRE-LSYWDQELAVLAEEISVWRDEYLIAVKQKAAEICQG-FLPE 175

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            ++ L+ +   + +         YA+ L    + D     T+ GPH++DL +      + 
Sbjct: 176 YEIQLSYYRGWEKETP-------YAELLKRNFERDCQLGYTVNGPHKADLRMKVSGTPVE 228

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
               S G+ K+++  + LA    ++  TG   I L+D+ ++ LD  +R  L + + +  +
Sbjct: 229 DVL-SRGQLKLMVCALRLAQGLHLTEATGKQCIYLIDDFASELDSHRRALLAQRLKETNA 287

Query: 344 QIFMTGT-DKSVFDSLNETAKFMRISNHQA 372
           Q+F++   ++ + D  +E  K   + + + 
Sbjct: 288 QVFISAISNEQIADMHDENGKMFHVEHGKI 317


>gi|268318289|ref|YP_003292008.1| DNA replication and repair protein RecF [Rhodothermus marinus DSM
           4252]
 gi|262335823|gb|ACY49620.1| DNA replication and repair protein RecF [Rhodothermus marinus DSM
           4252]
          Length = 387

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 79/381 (20%), Positives = 151/381 (39%), Gaps = 17/381 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FR +   R+ F  +  +  G NG GKTN+LEAI +L   + F  A  +  
Sbjct: 1   MLLRSLRVRNFRAHEDTRVTFAPRINLIGGPNGAGKTNLLEAIHYLCLSKSFLAAQDSYA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+P FF       G     ++ ++L        R    N   +  + +L   L +  
Sbjct: 61  LREGAP-FFELEGVFAGT-QRPELVVRLIYVPGEGKRVFF-NGAPLERLADLVGELPVVV 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----D 179
           L P+   +  G   ERRRFLD ++    P + + ++ + R +R RN LL           
Sbjct: 118 LSPADQALTGGPPEERRRFLDNLLSQAYPAYLQDLLQYRRALRQRNELLARWRRHPASVQ 177

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI--KLSLTGFLDGKFD 237
            S   S + ++  LG ++   R+  +   ++ + E            ++          +
Sbjct: 178 PSLLESWQEELVALGSRLIHRRLRFVQEFAAYLAEAHACLGLSAEIPRIEYVTVAPLDPE 237

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
               A+   +  +L      +    RTL GPHR +L++      +   + S G+ +++ +
Sbjct: 238 ADPEAIAAAFRARLQRLAPREREQGRTLTGPHRDELVLRLNGLEVR-RYASQGQHRIMGL 296

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVF 355
            + LA    +       P+LLLD++   LD  +   +  ++       Q F+T     + 
Sbjct: 297 ALKLAKFFYLRARRDETPLLLLDDVFDGLDRYRTQRILELLQHGEQIEQSFVTSARLDLL 356

Query: 356 DSLNETA----KFMRISNHQA 372
             L   A    +   +   + 
Sbjct: 357 QELQTLAAPENRIFWVEAGRV 377


>gi|297616217|ref|YP_003701376.1| DNA replication and repair protein RecF [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144054|gb|ADI00811.1| DNA replication and repair protein RecF [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 368

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/371 (21%), Positives = 145/371 (39%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L    FRN  S  +   ++  + +G N  GKTN+LEAI  +   R FR A   D+
Sbjct: 1   MKILKLETRFFRNLVSCVIEPCSRINVILGKNAQGKTNLLEAIYVVGHNRSFRGARDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G    +         E    I I  +   +   + L++N+       +    L+   
Sbjct: 61  VTHGRREGYRLKVTYALDE---RIIIFEQRYSESKNKVLRLNNKPAASKTQHR--LKSVV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RR FLD ++  + P + R +  +++++  RN  L +         
Sbjct: 116 FTPEDLYLIKGEPERRRNFLDGILCQLRPEYERTLESYKKILGRRNAYLKQSRSFGQGMR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS---FC 241
            ++    E  V +  AR+ +   L   + +  Q  +     + +   L    +       
Sbjct: 176 VLQGMFIEAAVPLICARLNLAAILEKEVSKLYQLLSGEAEDVCMRYVLSFPLETGKLTPD 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            L     K L   +  +     TL+GPHR D  +          + S G+Q+ + V + L
Sbjct: 236 LLAASLDKALEVSKDKELKQGITLVGPHRDDFNLYLRGHN-ARTYASQGQQRNLAVSLKL 294

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
                  N  G+ P+LLLDE+ A LD+++R  L   +     Q F++  ++   D +   
Sbjct: 295 GELATYKNIKGYFPVLLLDEVLAELDKNRRTLLLEYLQQAEFQTFISSVERE--DVVAVA 352

Query: 362 AKFMRISNHQA 372
            K   + + + 
Sbjct: 353 GKVFAVEDGRI 363


>gi|15836608|ref|NP_297296.1| recombination protein F [Xylella fastidiosa 9a5c]
 gi|13959493|sp|Q9PHE1|RECF_XYLFA RecName: Full=DNA replication and repair protein recF
 gi|9104763|gb|AAF82816.1|AE003855_3 DNA replication and repair RecF protein [Xylella fastidiosa 9a5c]
          Length = 364

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 155/369 (42%), Gaps = 10/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FR + ++          F+G+NG GKT++LEA+  +  GR FR      +
Sbjct: 1   MHITQLVLRHFRCFDAVDFFPLPGLNFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS +    F   +  + +     +            +++   I  +  L   L +  
Sbjct: 61  IRHGSEN-LEIFVDWQETDLINARRRRAGLSHYGQEWIGRLDGQKIMHLATLCAALAVIT 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
              S  ++ +  +  RRRFLD  +F ++P        +  +++ RN LL +   + +   
Sbjct: 120 FESSSYQLINSNAELRRRFLDWGLFHVEPDFLDLWRCYTHVLKQRNSLLKQ-KEELAMLE 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + +++E+G ++   R + +  L   ++  + +   P++K+    F  G          
Sbjct: 179 AWDQKLSEVGEQLTFRRFQYLERLKQRVIPLISRIT-PNLKIHGLNFNHGWRRHELP--- 234

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 LF  R+ D     T +GPHRSD    +      +   S G+ K++ +   LA A
Sbjct: 235 --LIDALFISRERDYQYGYTSLGPHRSDWTPQFASIP-GVHVLSRGQGKLITLMCLLAQA 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAK 363
           +   +  G  PIL LD++++ LD+  +  +  ++ +I +Q+ +TGT+             
Sbjct: 292 QDFFDQRGEWPILALDDLASELDQKHQWRVLEMLAEIPAQVLITGTEIPQGLKPYFSVGA 351

Query: 364 FMRISNHQA 372
              + +   
Sbjct: 352 MFHVEHGAI 360


>gi|1262354|emb|CAA94710.1| RecF [Mycobacterium leprae]
          Length = 385

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/379 (22%), Positives = 158/379 (41%), Gaps = 23/379 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++   + +FR++  + L  +   T+F G NG GKTN++EA+ + +     R  +   +
Sbjct: 1   MYVRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       + +I LE    R+ R  ++N  ++R + E+   LR   
Sbjct: 61  IRAGTIRAIVSTIVVNEG---RECAIDLEIAAGRANRA-RLNRSLVRGMREVVGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEG 176
             P    +  G    RRR+LD +     P       D+++++R R  LL           
Sbjct: 117 FAPEDLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRLALLKSLAAARYRSD 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLD- 233
                     + ++AE G ++  AR++++N L+  + +  Q          +S    LD 
Sbjct: 177 QGVLDTLDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQLLAPGSRTASISYRASLDI 236

Query: 234 ----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
               G        L+ +    L   R ++      L+GPHR +L +   D+       S 
Sbjct: 237 GGIAGVGSSDRALLQADLLAGLSTRRNVELERGICLVGPHRDELELRLGDQPAK-GFASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE   + + + LA   L+    G  P+LLLD++ A LD  +  AL   V +   Q+ +T 
Sbjct: 296 GESWSLAIALRLAAYELL-RADGNEPVLLLDDVFAELDAARCRALA-TVAESAEQVLVTS 353

Query: 350 TDKSVFDSLNETAKFMRIS 368
             +     +   AK++ + 
Sbjct: 354 AAQEDIP-VGWDAKWVTVD 371


>gi|189501917|ref|YP_001957634.1| hypothetical protein Aasi_0498 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497358|gb|ACE05905.1| hypothetical protein Aasi_0498 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 370

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 159/380 (41%), Gaps = 24/380 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L    F+NY S+ L F  Q    VG NG GKTN+L+AI +LS  +    +  +  
Sbjct: 1   MLLRKLRCYHFKNYDSIELSFATQLNCIVGANGAGKTNLLDAIHYLSLTKSAFNSIDSQN 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
              G      T   ++G     D S  ++   DR   + LQ+N    + + E      I 
Sbjct: 61  ILHG-----GTQMSIQGHFFKNDKSYDVKCIVDRDQGKSLQVNGKAYKTMREHIGQFPIV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179
              P    +    S  RR+F D ++  IDP +   +I ++++++ RN  L     +   D
Sbjct: 116 LTTPYDTELIRSTSEVRRKFFDAILCQIDPNYLHTLIQYQQILKHRNSFLKMSAGKFNVD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +  +S + Q+  L  ++  AR   ++    ++ +  +        + + G+     D  
Sbjct: 176 RALINSYDTQLLPLCKQLYAARKAFVDIFYPILQQQYEYFVDAPEIIEM-GYESDADDPG 234

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                  + ++  D  K D +++RT++G HR D +    +  I    GS G+QK  ++ +
Sbjct: 235 -------FEQRFLDNIKEDLLAQRTILGIHRDDYVFMLNNYPIK-KFGSQGQQKSFIIAL 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGT----DKSV 354
            LA    I    G  P+LLLD+I   LDE +   L   +      Q+++T        S+
Sbjct: 287 RLAQFACIHQALGCKPLLLLDDIFDKLDEQRIERLVYLMAQQYFGQVWITDAGGKRSASI 346

Query: 355 FDSLNETAKFMRISNHQALC 374
              +       +I     + 
Sbjct: 347 LKEIQADKALFKIEGGTLMQ 366


>gi|113475400|ref|YP_721461.1| recombination protein F [Trichodesmium erythraeum IMS101]
 gi|123352421|sp|Q114T6|RECF_TRIEI RecName: Full=DNA replication and repair protein recF
 gi|110166448|gb|ABG50988.1| DNA replication and repair protein RecF [Trichodesmium erythraeum
           IMS101]
          Length = 390

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 169/392 (43%), Gaps = 28/392 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++ +FRNY   ++ FD   TI +GDN  GK+N+LE++  LS  +  R     D+
Sbjct: 1   MYLKHLHLRQFRNYRDQQVKFDGAKTILLGDNAQGKSNLLESVELLSTLKSHRAIRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             + S       A +E   G  D+++ L ++     R + +N   I    +    L +  
Sbjct: 61  I-LDSKQASKIQASLERQLGNIDLALTLRSQGK---RTVAVNGETISRHLDFLSILNVVH 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
                  +  G    RR +LDR++  ++P +   ++ + +++R RN LL +         
Sbjct: 117 FSSLDLDLVRGGPEVRRYWLDRLLVQLEPVYAHILLQYNQVLRQRNALLKKIRQQKMAAE 176

Query: 181 ----------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                        +  +AQ+A  G ++   R  ++  L+ L  E+    +       +  
Sbjct: 177 TTGSSPSILTQELALWDAQLATTGSRVIRRRQRLLQKLAPLAGEWHCAISGSMEVFKMEY 236

Query: 231 FLDGKFD-------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
             +   D        S   +++ + +K+      +     T++GPHR D+I    D    
Sbjct: 237 LANVIVDSNELIIQDSLEGVRQAFLEKIKVRAIAEQYQGTTVVGPHRDDVIFTINDTP-A 295

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
             +GS G+Q+ +++ + LA  +LI       P+LLLD++ A LD  ++N L   +++   
Sbjct: 296 RQYGSQGQQRTLVLALKLAELQLIEEVVQEPPLLLLDDVLAELDLHRQNQLLEAISN-RF 354

Query: 344 QIFMTGTDKSVFD-SLNETAKFMRISNHQALC 374
           Q  +T T    FD    +  + + + +     
Sbjct: 355 QTLITTTHLGCFDGQWLQDTQILSVKSGNISS 386


>gi|320162555|ref|YP_004175780.1| DNA replication and repair protein RecF [Anaerolinea thermophila
           UNI-1]
 gi|319996409|dbj|BAJ65180.1| DNA replication and repair protein RecF [Anaerolinea thermophila
           UNI-1]
          Length = 413

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 98/399 (24%), Positives = 162/399 (40%), Gaps = 36/399 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+++ FR +A L +    +  + VG+N  GKT++LEAI +L+       +    +
Sbjct: 1   MHLTHLSLTHFRLFARLDMELPRRTLLLVGENAQGKTSLLEAIYYLATFTSLHASLDRQI 60

Query: 65  TRIGSPSFFSTFARV------EGMEGLADISIKLETRDD----RSVRCLQINDVVIRVVD 114
               +       AR+      EG     ++ + LE        R  + + ++ V  R   
Sbjct: 61  VSFAAAREPLAVARIVGDFEREGRAHRLEVRLILEANGGFPPARFRKEILLDGVK-RTAQ 119

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           E    L     +P M  I  G   ERRR+L+  +    P + + + D+ R +  RN LL 
Sbjct: 120 EATGALTAVMFLPDMTHILDGSPEERRRYLNLALAQAVPGYAQALTDYTRALEQRNALLK 179

Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG- 230
              E   D +  +  +  +AE G  I  AR+  I  L  L      +       L     
Sbjct: 180 LLQERSADPAQLAYWDTLLAEKGAFILHARIAAIAELERLAARIHNRLTGGTEVLQFVYL 239

Query: 231 -------FLDGKFDQ-----------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
                    +G++             S   L+E + ++L D R  +     T IGPHR +
Sbjct: 240 PAYDPLPHPEGQYALPILTPMDRGGFSLTQLREGFLQRLSDLRSEEIARGVTTIGPHRDE 299

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           L     +      +GS G+ +  L+ + +A AR +   TG  PILLLDEI A LD+ +R 
Sbjct: 300 LRF-LSNGVDLGDYGSRGQLRTTLLSLKMAEARWMKERTGEFPILLLDEILAELDDRRRA 358

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNH 370
            L   + D   Q  +T TD  +F           R++  
Sbjct: 359 DLLDALDDFE-QAVLTTTDLKLFAPPFLSRCTVWRVTQG 396


>gi|317131012|ref|YP_004090326.1| DNA replication and repair protein RecF [Ethanoligenens harbinense
           YUAN-3]
 gi|315468991|gb|ADU25595.1| DNA replication and repair protein RecF [Ethanoligenens harbinense
           YUAN-3]
          Length = 375

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/379 (22%), Positives = 152/379 (40%), Gaps = 22/379 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRN     L  D    IF G N  GKTN+LEAI   +  R FR A  +++
Sbjct: 1   MIVHRLSLQGFRNLEQTVLEPDPSVNIFYGQNAQGKTNLLEAIWLFTGARSFRGAKDSEL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               +     S      G    A +SI          R  ++NDV ++    L+      
Sbjct: 61  VGFQAEKADLSLSFTAGGRLQEAVLSI------REGRRYARLNDVPLQSPAGLSGEFCAV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
              P    +       RR FLD  +  + PRH   +  + + +  RN LL +        
Sbjct: 115 IFSPEHLSLVKDGPSVRRAFLDEAICPLRPRHAAILAAYHKALIQRNALLKDIPHHMDLL 174

Query: 183 --CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--- 237
                 + ++ +LG  I  AR+  +  L        Q  +  H + +             
Sbjct: 175 DTLDVWDERVGKLGAAILHARLRYLARLLPKAERLHQSISNSHEQAAFRYESAKGLQNVL 234

Query: 238 ----QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
               +    +++     + + R+ D  +  T +GPHR DL +   ++    +  S G+Q+
Sbjct: 235 DDPGRHASEIEQALRAAMRERRRADLETGVTGVGPHRDDLTISVAERP-ARSFASQGQQR 293

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
              + + LA A ++++  G  P+LLLD++ + LD  +R+ L   +   G+Q+F+T  D  
Sbjct: 294 TAALALKLAEAEVLTDVMGEPPVLLLDDVFSELDGSRRDYLMHHID--GAQVFITCCDPQ 351

Query: 354 VFDSLNETAKFMRISNHQA 372
              S         +SN Q 
Sbjct: 352 ELAS--SAGAVFSLSNGQI 368


>gi|71899733|ref|ZP_00681885.1| RecF protein [Xylella fastidiosa Ann-1]
 gi|71730528|gb|EAO32607.1| RecF protein [Xylella fastidiosa Ann-1]
          Length = 364

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 154/374 (41%), Gaps = 20/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FR +  +          F+G+NG GKT++LEA+  +  GR FR      +
Sbjct: 1   MHITQLVLRHFRCFDVVDFFPLPGLNFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGL 60

Query: 65  TRIGSPSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            R GS +      +   A +      A +S              +++   I  +  L   
Sbjct: 61  IRHGSENLEIFVDWQETALINARRRRAGLSHY------GQEWIGRLDGQKIMHLASLCAA 114

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           L +     S  ++ +  +  RRRFLD  +F ++P        +  +++ RN LL +    
Sbjct: 115 LAVITFESSSYQLINSNAELRRRFLDWGLFHVEPDFLDLWRRYTHVLKQRNSLLKQ-KEK 173

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +   + + +++E+G ++   R + +  L   ++  + +   P++K+    F  G     
Sbjct: 174 LAMLEAWDQKLSEVGEQLTFRRFQYLERLKQRVIPLISRIT-PNLKIHGFNFNHGWRRHE 232

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                      LF  R+ D     T +GPHRSD    +      +   S G+ K++ +  
Sbjct: 233 LP-----LIDALFISRERDYQYGYTSLGPHRSDWTPQFSSIP-GVHFLSRGQGKLITLMC 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSL 358
            LA A+   +  G  PIL LD++++ LD+  +  +  ++ +I +Q+ +TGT+        
Sbjct: 287 LLAQAQDFFDQRGEWPILALDDLASELDQKHQWRVLEMLAEIPAQVLITGTEISQGLKPF 346

Query: 359 NETAKFMRISNHQA 372
                   + +   
Sbjct: 347 FSVGAMFHVEHGAI 360


>gi|160944263|ref|ZP_02091492.1| hypothetical protein FAEPRAM212_01772 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444445|gb|EDP21449.1| hypothetical protein FAEPRAM212_01772 [Faecalibacterium prausnitzii
           M21/2]
          Length = 373

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 158/382 (41%), Gaps = 30/382 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RN  + RL    + T+  G+NG GKTN+LEAI  L+ G+ FR    A++
Sbjct: 1   MRLLSLEVQNYRNICAARLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60

Query: 65  TRIGSPSFFSTFA-----RVEGMEGLADISIKLETR---DDRSVRCLQINDVVIRVVDEL 116
            R G  +F    A     R EG E      I++        +  R   +N    +    L
Sbjct: 61  VRRG-EAFAVLEADTQRDRPEGCEPAEPAHIRMTVGTPEAAKPGRYAAVNGAAPKRAAAL 119

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
                     P    +  G    RR+FLD  +  + P +      + R+++ +N LL   
Sbjct: 120 AGSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLASYRRYVRVLQQKNALLRHS 179

Query: 177 --------YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
                       +    +  ++A  G  +   R E +  L+        + +    ++S+
Sbjct: 180 ANGQERPYAEKRTLLEVLNTELAAQGEALQQRRREYLKLLAPRACANYAELSHGAERMSI 239

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                     +        A+ L   ++ +  + ++L G HR DL +   D+   + + S
Sbjct: 240 RY--------AAQFAPGGLAELLRQRQEEELRAGQSLCGIHREDLELLLDDQPARV-YAS 290

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+Q+ V++ + +A A   +  TG  P+LLLD++ + LDE ++  L   + +   Q F+T
Sbjct: 291 QGQQRSVVLSLKMAEAAAAAQITGEHPVLLLDDVLSELDEGRKQYLLTCMKEK--QTFVT 348

Query: 349 GTDKSVFDSLNETAKFMRISNH 370
             D + F  L    +  R+   
Sbjct: 349 SCDDTDF--LKTDGEVYRMDGG 368


>gi|295103717|emb|CBL01261.1| recF protein [Faecalibacterium prausnitzii SL3/3]
          Length = 373

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/382 (22%), Positives = 157/382 (41%), Gaps = 30/382 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  +RN  + RL    + T+  G+NG GKTN+LEAI  L+ G+ FR    A++
Sbjct: 1   MHLLSLEVQNYRNICAARLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60

Query: 65  TRIGSPSFFSTFA-----RVEGMEGLADISIKLETR---DDRSVRCLQINDVVIRVVDEL 116
            R G  +F    A     R EG E      I++        +  R   +N    +    L
Sbjct: 61  VRRG-EAFAVLEADTQRDRPEGCEPAEPAHIRMTVGTPEAAKPGRYAAVNGAAPKRAAAL 119

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
                     P    +  G    RR+FLD  +  + P +      + R+++ +N LL   
Sbjct: 120 AGSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLASYRRYVRVLQQKNALLRHS 179

Query: 177 --------YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
                       +    +  ++A  G  +   R E +  L+        + +    ++S+
Sbjct: 180 ANGQERPYAEKRTLLEVLNTELAAQGEALQQRRREYLKLLAPRACANYAELSHGAERMSI 239

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                     +        A  L   ++ +  + ++L G HR DL +   D+   + + S
Sbjct: 240 RY--------AAQFAPGGLAALLRQRQEEELRAGQSLCGIHREDLELLLDDQPARV-YAS 290

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+Q+ V++ + +A A   +  TG  P+LLLD++ + LDE ++  L   + +   Q F+T
Sbjct: 291 QGQQRSVVLSLKMAEAAAAAQITGEHPVLLLDDVLSELDEGRKQYLLTCMKEK--QTFVT 348

Query: 349 GTDKSVFDSLNETAKFMRISNH 370
             D + F  L    +  R++  
Sbjct: 349 SCDDTDF--LKTDGEVYRMNGG 368


>gi|15604793|ref|NP_219577.1| recombination protein F [Chlamydia trachomatis D/UW-3/CX]
 gi|166154295|ref|YP_001654413.1| recombination protein F [Chlamydia trachomatis 434/Bu]
 gi|166155170|ref|YP_001653425.1| recombination protein F [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|255310877|ref|ZP_05353447.1| recombination protein F [Chlamydia trachomatis 6276]
 gi|255317177|ref|ZP_05358423.1| recombination protein F [Chlamydia trachomatis 6276s]
 gi|301335547|ref|ZP_07223791.1| recombination protein F [Chlamydia trachomatis L2tet1]
 gi|13959461|sp|O84077|RECF_CHLTR RecName: Full=DNA replication and repair protein recF
 gi|226737775|sp|B0B9I2|RECF_CHLT2 RecName: Full=DNA replication and repair protein recF
 gi|226737777|sp|B0BB61|RECF_CHLTB RecName: Full=DNA replication and repair protein recF
 gi|3328469|gb|AAC67665.1| ABC superfamily ATPase [Chlamydia trachomatis D/UW-3/CX]
 gi|165930283|emb|CAP03769.1| DNA replication and repair protein [Chlamydia trachomatis 434/Bu]
 gi|165931158|emb|CAP06723.1| DNA replication and repair protein [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|296435592|gb|ADH17766.1| recombination protein F [Chlamydia trachomatis G/9768]
 gi|296436516|gb|ADH18686.1| recombination protein F [Chlamydia trachomatis G/11222]
 gi|296437452|gb|ADH19613.1| recombination protein F [Chlamydia trachomatis G/11074]
 gi|297139951|gb|ADH96709.1| recombination protein F [Chlamydia trachomatis G/9301]
 gi|297748203|gb|ADI50749.1| RecF [Chlamydia trachomatis D-EC]
 gi|297749083|gb|ADI51761.1| RecF [Chlamydia trachomatis D-LC]
          Length = 365

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 151/371 (40%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRNY  LRL    +     G N  GKTN+LEA+  LS GR FR +   D 
Sbjct: 1   MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+  FF     +E +    ++   L  + D+  + +  +   I  + EL     +  
Sbjct: 61  IRFGASHFF-----IEAVFSHKEVFHTLSIQVDKKGKKILFDGAPITKLSELVGLFPVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  I  G   ERRRFLD ++     ++   +  + + +  RN  +      +   S
Sbjct: 116 FSIKDIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQNQKA--IS 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +  + +   G  +   R E    L+++            + L     L  +   +   + 
Sbjct: 174 AWNSPLIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKETLSLRYESSLITEESPTLNDIA 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             Y ++L      D     T++GPHR +L++   D  +     S G++  +L  +  A  
Sbjct: 234 SNYYEQLRIANTKDLDLGYTMVGPHRDELLLTINDLPV-AKFSSEGQKHSLLAVLRFAEC 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             +       P+L +D+I A LD+ + + L ++   +G Q+  T T     D  + T+  
Sbjct: 293 VYLQEEFCIHPLLCMDDIHACLDQQRLDQLLQLSNSLG-QVVTTST--ICPDHRSTTSCI 349

Query: 365 MRISNHQALCI 375
             ++  Q   +
Sbjct: 350 FHVTQAQVSLV 360


>gi|165924210|ref|ZP_02220042.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 334]
 gi|165916344|gb|EDR34948.1| DNA replication and repair protein RecF [Coxiella burnetii RSA 334]
          Length = 357

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 93/366 (25%), Positives = 154/366 (42%), Gaps = 15/366 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +++FRN A + +   +Q   F G NG GKT+ILE+I +LS GR FR      + +
Sbjct: 4   IGSLKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQ 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F        G +    I + +E RD    RCL+IN           K L +  L 
Sbjct: 64  DNTDRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLS 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
               R        RR+FLD ++F ++P         +R ++ RN  L          +  
Sbjct: 120 AMSHRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNASLK-AKLPLGEITHW 178

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +  + E G +++  R  ++     L  + +Q +  P   L    F       S       
Sbjct: 179 DKMLVEDGERLHQLRQNVVTEFKPLFTQMLQ-QFLPAYPLIGHYFRGWSEKYS------- 230

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
             ++L    K D     T  GP R+D  +   D        S G+QK+V   +  A   L
Sbjct: 231 LMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL-SQGQQKLVTYALHFAQGLL 289

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +   TG +PI L+D++ A LD +KR+ +  +V  + SQ+F++G D +    L   +    
Sbjct: 290 LKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPNEI-RLPPHSTLFH 348

Query: 367 ISNHQA 372
           + + + 
Sbjct: 349 VKHGKV 354


>gi|15607145|ref|NP_214517.1| recombination protein F [Mycobacterium tuberculosis H37Rv]
 gi|148659760|ref|YP_001281283.1| recombination protein F [Mycobacterium tuberculosis H37Ra]
 gi|167969466|ref|ZP_02551743.1| recombination protein F [Mycobacterium tuberculosis H37Ra]
 gi|306778291|ref|ZP_07416628.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu001]
 gi|306974410|ref|ZP_07487071.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu010]
 gi|307082118|ref|ZP_07491288.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu011]
 gi|307086729|ref|ZP_07495842.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu012]
 gi|2842621|sp|Q59586|RECF_MYCTU RecName: Full=DNA replication and repair protein recF
 gi|166220718|sp|A5TY71|RECF_MYCTA RecName: Full=DNA replication and repair protein recF
 gi|1552556|emb|CAB02424.1| DNA REPLICATION AND REPAIR PROTEIN RECF (SINGLE-STRAND DNA BINDING
           PROTEIN) [Mycobacterium tuberculosis H37Rv]
 gi|148503912|gb|ABQ71721.1| DNA replication and repair protein RecF [Mycobacterium tuberculosis
           H37Ra]
 gi|308213441|gb|EFO72840.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu001]
 gi|308356305|gb|EFP45156.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu010]
 gi|308360192|gb|EFP49043.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu011]
 gi|308363879|gb|EFP52730.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           SUMu012]
          Length = 385

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 89/362 (24%), Positives = 153/362 (42%), Gaps = 24/362 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A + L      T+FVG NG GKTN++EA+ + +     R ++   +
Sbjct: 1   MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R+G+     ST    +G E   D+ I         V   ++N   +R   ++   LR  
Sbjct: 61  IRVGTDRAVISTIVVNDGRECAVDLEIATGR-----VNKARLNRSSVRSTRDVVGVLRAV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYF 178
              P    +  G   +RRR+LD +     P       ++ER++R R  LL          
Sbjct: 116 LFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRG 175

Query: 179 DS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG----- 230
           D          ++++AE G ++  AR++++N L+  + +  Q         S+       
Sbjct: 176 DRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMD 235

Query: 231 --FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                 + D     L       L   R  +      L+GPHR DLI+   D+       S
Sbjct: 236 VTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFAS 294

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE   + V + LA  +L+    G  P+LLLD++ A LD  +R AL     +   Q+ +T
Sbjct: 295 HGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLVT 352

Query: 349 GT 350
             
Sbjct: 353 AA 354


>gi|153209959|ref|ZP_01947546.1| DNA replication and repair protein RecF [Coxiella burnetii 'MSU
           Goat Q177']
 gi|212217691|ref|YP_002304478.1| DNA replication and repair protein [Coxiella burnetii CbuK_Q154]
 gi|226737782|sp|B6J8S5|RECF_COXB1 RecName: Full=DNA replication and repair protein recF
 gi|120575205|gb|EAX31829.1| DNA replication and repair protein RecF [Coxiella burnetii 'MSU
           Goat Q177']
 gi|212011953|gb|ACJ19333.1| DNA replication and repair protein [Coxiella burnetii CbuK_Q154]
          Length = 357

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 93/366 (25%), Positives = 155/366 (42%), Gaps = 15/366 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +++FRN A + +   +Q   F G NG GKT+ILE+I +LS GR FR      + +
Sbjct: 4   IGSLKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQ 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F        G +    I + +E RD +  RCL+IN           K L +  L 
Sbjct: 64  DNTDRFLIFITLYNGTQF---IPLGVE-RDCQGDRCLRINGETASSWSLAAKRLPLCSLS 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
               R        RR+FLD ++F ++P         +R ++ RN  L          +  
Sbjct: 120 AMSHRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNASLK-AKLPLGEITHW 178

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +  + E G +++  R  ++     L  + +Q +  P   L    F       S       
Sbjct: 179 DKMLVEDGERLHQLRQNIVTEFKPLFTQMLQ-QFLPAYPLIGHYFRGWSEKYS------- 230

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
             ++L    K D     T  GP R+D  +   D        S G+QK+V   +  A   L
Sbjct: 231 LMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL-SQGQQKLVTYALHFAQGLL 289

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +   TG +PI L+D++ A LD +KR+ +  +V  + SQ+F++G D +    L   +    
Sbjct: 290 LKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPNEI-RLPPHSTLFH 348

Query: 367 ISNHQA 372
           + + + 
Sbjct: 349 VKHGKV 354


>gi|88813026|ref|ZP_01128268.1| recombination protein F [Nitrococcus mobilis Nb-231]
 gi|88789659|gb|EAR20784.1| recombination protein F [Nitrococcus mobilis Nb-231]
          Length = 357

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/368 (23%), Positives = 153/368 (41%), Gaps = 19/368 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + +  FRN   + L  D +     G+N  GKT++LEAI +L+ GR F       +
Sbjct: 1   MTLARIEVEAFRNLRGVVLTPDPRVNFIWGNNASGKTSLLEAIHWLARGRSFLSVHSDQL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G    F+  A ++       + ++      R    ++ N   I  + E+   L    
Sbjct: 61  IRQGC-RAFTLGASIQVPPRTTWLGMERTPGRTR----VRCNGQDIWNLSEIAWLLPTHV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +     R+F G   ERR  LD  VF ++  ++ R   ++R +R RN  L  G  DS    
Sbjct: 116 INTESQRLFVGAPQERRSLLDWGVFHVEHSYQGRWRRYQRALRQRNAALRTG--DSQLAR 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + EA +      ++ +R   +NAL      +++ E  P ++L           QS    +
Sbjct: 174 AWEADLVTAAEAVDSSRRCYLNALWPHWHAFIE-EWLPELELH-------WDFQSGWPRR 225

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           ++    L   R  +     TL GPHR DL     D        S G+QK+  + + LA A
Sbjct: 226 DDLRGVLAQARGRELERGHTLYGPHRGDLRFIAGDVGAAQRL-SRGQQKLAAIALRLAQA 284

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            L        P++L+D+++A LD   R  +   +  + +Q+ +T   ++    L    +F
Sbjct: 285 ELTLKNGQQRPVILVDDLAAELDAGHRERVLAKLLRMDAQLLLTALSQNEL-VLPGDGRF 343

Query: 365 --MRISNH 370
               +   
Sbjct: 344 RVFHVEQG 351


>gi|31791180|ref|NP_853673.1| recombination protein F [Mycobacterium bovis AF2122/97]
 gi|121635886|ref|YP_976109.1| recombination protein F [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|121635913|ref|YP_976136.1| recombination protein F [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224988386|ref|YP_002643053.1| DNA replication and repair protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|51316336|sp|Q7U314|RECF_MYCBO RecName: Full=DNA replication and repair protein recF
 gi|254790483|sp|C1AJ00|RECF_MYCBT RecName: Full=DNA replication and repair protein recF
 gi|31616765|emb|CAD92865.1| DNA REPLICATION AND REPAIR PROTEIN RECF (SINGLE-STRAND DNA BINDING
           PROTEIN) [Mycobacterium bovis AF2122/97]
 gi|121491533|emb|CAL69987.1| dna replication and repair protein recF [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|121491560|emb|CAL70017.1| Dna replication and repair protein recF [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224771499|dbj|BAH24305.1| DNA replication and repair protein [Mycobacterium bovis BCG str.
           Tokyo 172]
          Length = 385

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 89/362 (24%), Positives = 153/362 (42%), Gaps = 24/362 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A + L      T+FVG NG GKTN++EA+ + +     R ++   +
Sbjct: 1   MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R+G+     ST    +G E   D+ I         V   ++N   +R   ++   LR  
Sbjct: 61  IRVGTDRAVISTIVVNDGRECAVDLEIATGR-----VNKARLNRSSVRSTRDVVGVLRAV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYF 178
              P    +  G   +RRR+LD +     P       ++ER++R R  LL          
Sbjct: 116 LFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVVRQRTALLKSVPGARYRG 175

Query: 179 DS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG----- 230
           D          ++++AE G ++  AR++++N L+  + +  Q         S+       
Sbjct: 176 DRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMD 235

Query: 231 --FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                 + D     L       L   R  +      L+GPHR DLI+   D+       S
Sbjct: 236 VTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFAS 294

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE   + V + LA  +L+    G  P+LLLD++ A LD  +R AL     +   Q+ +T
Sbjct: 295 HGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLVT 352

Query: 349 GT 350
             
Sbjct: 353 AA 354


>gi|212211672|ref|YP_002302608.1| DNA replication and repair protein [Coxiella burnetii CbuG_Q212]
 gi|226737783|sp|B6J289|RECF_COXB2 RecName: Full=DNA replication and repair protein recF
 gi|212010082|gb|ACJ17463.1| DNA replication and repair protein [Coxiella burnetii CbuG_Q212]
          Length = 357

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 93/366 (25%), Positives = 154/366 (42%), Gaps = 15/366 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +++FRN A + +   +Q   F G NG GKT+ILE+I +LS GR FR      + +
Sbjct: 4   IGSLKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQ 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F        G +    I + +E RD    RCL+IN           K L +  L 
Sbjct: 64  DNTDRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLS 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
               R        RR+FLD ++F ++P         +R ++ RN  L          +  
Sbjct: 120 AMSHRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAALK-AKLPLGEITHW 178

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +  + E G +++  R  ++     L  + +Q +  P   L    F       S       
Sbjct: 179 DKMLVEDGERLHQLRQNVVTEFKPLFTQMLQ-QFLPAYPLIGHYFRGWSEKYS------- 230

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
             ++L    K D     T  GP R+D  +   D        S G+QK+V   +  A   L
Sbjct: 231 LMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL-SQGQQKLVTYALHFAQGLL 289

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +   TG +PI L+D++ A LD +KR+ +  +V  + SQ+F++G D +    L   +    
Sbjct: 290 LKEKTGISPIYLIDDLPAELDANKRDCVIDLVNCLESQVFISGIDPNEI-RLPPHSTLFH 348

Query: 367 ISNHQA 372
           + + + 
Sbjct: 349 VKHGKV 354


>gi|325846385|ref|ZP_08169354.1| putative DNA replication and repair protein RecF [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481569|gb|EGC84609.1| putative DNA replication and repair protein RecF [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 357

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 162/370 (43%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +S+FRNY S  + F+    IF+GDN  GKTN+LE+I +L+  + F+     D+
Sbjct: 1   MWIQSLRLSKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         ++G+    +    ++ R + + + + +ND+      +L    ++  
Sbjct: 61  IMFNEKEMA-----LDGLIRKNESFKNVKIRVNENKKEIFVNDIKYDKNKDLKSLFKLVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182
             P    I       RR  +D ++ +++  ++    DF++++  RN++L           
Sbjct: 116 FTPEDLTIIKDGPNFRRNLIDDIIISVNFSYKALKKDFDKVLSQRNKVLKNQRSKYFKEE 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             + + Q+  L  KI   R + I+ +++   +           LS+    D         
Sbjct: 176 LMAFDQQIIRLNYKIYRYREKYISLINTYAKKNHSNLTENKEDLSIIYRPDI-----VAK 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             EEY +K    +  D    RT  G  R ++ +    K  +   GS G+Q+  ++ I LA
Sbjct: 231 DIEEYREKFSKNKSYDLKYYRTTSGSQRDEIDIIINGKD-SKKFGSQGQQRSAILNIKLA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +  LI NT+    I+L D++ + LDE + N L   +   G Q  +T T+    D + + +
Sbjct: 290 NVNLIENTSQDKAIILFDDVFSELDEKRSNFLLENLG--GFQTIITATNTKSLDRV-DKS 346

Query: 363 KFMRISNHQA 372
           K  +I +   
Sbjct: 347 KIRKIKDGHI 356


>gi|254784276|ref|YP_003071704.1| DNA replication and repair protein RecF [Teredinibacter turnerae
           T7901]
 gi|259563674|sp|C5BKM1|RECF_TERTT RecName: Full=DNA replication and repair protein recF
 gi|237686556|gb|ACR13820.1| DNA replication and repair protein RecF [Teredinibacter turnerae
           T7901]
          Length = 378

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 95/374 (25%), Positives = 162/374 (43%), Gaps = 21/374 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+ISEFRN  S  L       +  G+NG GKT+ILE+IS L+ GR FR   +  +  
Sbjct: 4   LRRLDISEFRNLRSATLQPGEGINLISGENGSGKTSILESISVLAHGRSFRTHKFRRLIN 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               SF       EG      +S     R       ++I+        EL + L +  + 
Sbjct: 64  NDEKSFTLFGQIFEGTTRNIGLS-----RASNGDIQIRIDSKAAHTATELAECLPLLVMN 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
            +  ++  G    RR+F D +VF +    +     + R ++ RN LL       S     
Sbjct: 119 SASFQLLEGSGQVRRKFFDWLVFHVKQEFKHYWKLYARCIKQRNSLLRRDKITRSELLPW 178

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH---IKLSLTGFLDGKFDQSFCAL 243
           + ++ +    I   R E+     +  +  + + +F      +LS T              
Sbjct: 179 DQELTKAAQHIESMRSEVFELFQTHFLNEIGQFDFTETLGAELSCTYVSGWSK------- 231

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              Y ++L D  + D  +  T IG H+SD+ ++   +   +   S G+QK V+V +FLA 
Sbjct: 232 TGNYNEQLEDQFERDVAAGYTHIGSHKSDVKINLA-RVPAVEELSRGQQKSVIVALFLAE 290

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK-SVFDSL---- 358
           A +   TTG  P+ LLD++ A LDE     + + + ++GSQ+F T  D  S+        
Sbjct: 291 ALVFRTTTGRTPVFLLDDLPAELDEKNLRIVGKALKNLGSQVFATAIDPKSILTGWELVD 350

Query: 359 NETAKFMRISNHQA 372
           +E+ +   + + Q 
Sbjct: 351 DESLRMFHVKHGQV 364


>gi|160872204|ref|ZP_02062336.1| DNA replication and repair protein RecF [Rickettsiella grylli]
 gi|159121003|gb|EDP46341.1| DNA replication and repair protein RecF [Rickettsiella grylli]
          Length = 363

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 95/372 (25%), Positives = 165/372 (44%), Gaps = 17/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L  + FRN A L L F        G NG GK+++LEAI FLS GR FR    +  
Sbjct: 1   MHLFRLKTNYFRNLAELDLEFSPHFNFIYGKNGSGKSSLLEAIYFLSLGRSFRSRLASRA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +  F + F+ + G       +I LE       +    N+     V EL K L + +
Sbjct: 61  IQYDAERF-NLFSVLLGTSSTTMKTIGLEKIRQGKTKIKIDNNT--NPVSELAKLLPLQF 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P+   + SG    RR F+D  VF ++P+  +    ++ +++ RN  L       +   
Sbjct: 118 INPNSYLLLSGGPRARRGFIDWGVFHVEPQFFQIWQRYQHILKQRNAALQRQVP-WNQIK 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCAL 243
             +  + E   +I   R   ++ L  LI+E + K  N   + L      D K +      
Sbjct: 177 IWDLALIEAADEITSFRENYLHQLVPLIIELINKLVNLQGLNLVFYQGWDKKLN------ 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
               A  L    + D     T  GPHR+DL++     ++     S GEQK+++  + LA 
Sbjct: 231 ---LASILSGSLERDYKLLYTQFGPHRADLLLSLNGISV-HEILSRGEQKLLICALQLAQ 286

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET-- 361
             L+      + I L D++ + LD  K+NAL +++  + +Q+F+T  +K++  S+     
Sbjct: 287 GLLLKKIAQKSCIYLFDDLFSELDPTKQNALMQLLNTLEAQVFITTIEKTLIKSVETHRL 346

Query: 362 AKFMRISNHQAL 373
            K   + + Q +
Sbjct: 347 GKIFHVDDGQVI 358


>gi|194335185|ref|YP_002016979.1| DNA replication and repair protein RecF [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307662|gb|ACF42362.1| DNA replication and repair protein RecF [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 369

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 157/361 (43%), Gaps = 11/361 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K++ ++   FRN+  L        +I  G N  GKT+ILE + + +  RGF  A  ++ 
Sbjct: 1   MKLQCIHYENFRNHRLLNFEPSYGISILYGPNASGKTSILEGVHYCALTRGFHNALDSEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S  F    + ++  E    + +          + + ++   I+        +    
Sbjct: 61  LYFSSDFFVLESSFLDATERATTVRV---LYTKEKEKKIIVDKSEIKPFSRHIGRIPCIT 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY----FDS 180
             P+   I +G   ERRRFLD  +   + R+   ++ ++R+++ RN L+ + Y       
Sbjct: 118 FSPAELVIVNGAPAERRRFLDNAICQTNRRYLDDLLAYKRVLQQRNALIGQMYEKTGSQK 177

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKF-DQ 238
              +     ++ L   I   R++ +++   L     Q  +   H  +     L   F D 
Sbjct: 178 EMLAIWTDSLSRLAASIVYTRMQFLSSFLPLFQTLYQLLSPDEHPTIVYRCSLGKVFHDS 237

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S   L  ++  K  +  + + +  +T+ GPHR DL+     + I   + S G+ ++ L+ 
Sbjct: 238 SIDQLYSQFLVKFEETEREEILRGQTMTGPHRDDLLFLLHTREIK-KYASQGQMRIFLIA 296

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + L+  RL S+  G  PI LLD++ + LD    NA+FR++   G Q  +T  +   +  +
Sbjct: 297 LKLSQHRLFSDILGEKPICLLDDLFSELDASHSNAIFRLLETCG-QTIITSAENKPYSHV 355

Query: 359 N 359
           +
Sbjct: 356 D 356


>gi|71275532|ref|ZP_00651818.1| RecF protein [Xylella fastidiosa Dixon]
 gi|71900179|ref|ZP_00682319.1| RecF protein [Xylella fastidiosa Ann-1]
 gi|170729254|ref|YP_001774687.1| recombination protein F [Xylella fastidiosa M12]
 gi|226737850|sp|B0U1G7|RECF_XYLFM RecName: Full=DNA replication and repair protein recF
 gi|71163832|gb|EAO13548.1| RecF protein [Xylella fastidiosa Dixon]
 gi|71730068|gb|EAO32159.1| RecF protein [Xylella fastidiosa Ann-1]
 gi|167964047|gb|ACA11057.1| DNA replication and repair RecF protein [Xylella fastidiosa M12]
          Length = 364

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 78/374 (20%), Positives = 155/374 (41%), Gaps = 20/374 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FR +  +          F+G+NG GKT++LEA+  +  GR FR      +
Sbjct: 1   MHITQLVLRHFRCFDVVDFFPLPGLNFFIGENGSGKTSLLEAVHLMGYGRSFRGRVRDGL 60

Query: 65  TRIGSPSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            R GS +      +   A +      A +S              +++   I  +  L   
Sbjct: 61  IRHGSENLEIFVDWQETALINARRHRAGLSHY------GQEWIGRLDGQKIIHLASLCAA 114

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           L +     S  ++ +  +  RRRFLD  +F ++P        +  +++ RN LL +   +
Sbjct: 115 LAVITFESSSYQLINSNAELRRRFLDWGLFHVEPDFLDLWRCYTHVLKQRNSLLKQ-KEE 173

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +   + + +++E+G ++   R + +  L   ++  + +   P++K+    F  G     
Sbjct: 174 LAMLEAWDQKLSEVGEQLTFRRFQYLERLKQRVIPLISRIT-PNLKIHGFNFNHGWRRHE 232

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                      LF  R+ D     T +GPHRSD    +      +   S G+ K++ +  
Sbjct: 233 LP-----LIDALFISRERDYQYGYTSLGPHRSDWTPQFSSIP-GVHVLSRGQGKLITLMC 286

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSL 358
            LA A+   +  G  PIL LD++++ LD+  +  +  ++ +I +Q+ +TGT+        
Sbjct: 287 LLAQAQDFFDQRGEWPILSLDDLASELDQKHQWRVLEMLAEIPAQVLITGTEIPQGLKPF 346

Query: 359 NETAKFMRISNHQA 372
                   + +   
Sbjct: 347 FSVGAMFHVEHGAI 360


>gi|77163565|ref|YP_342090.1| RecF protein [Nitrosococcus oceani ATCC 19707]
 gi|97180823|sp|Q3JF36|RECF_NITOC RecName: Full=DNA replication and repair protein recF
 gi|76881879|gb|ABA56560.1| DNA replication and repair protein RecF [Nitrosococcus oceani ATCC
           19707]
          Length = 363

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 149/372 (40%), Gaps = 18/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L+I  FRN   + L       I  G N  GKT+ LEAI  L  GR FR       
Sbjct: 2   MHITHLDIRNFRNLKHIELHPSKGVNILSGANSSGKTSFLEAIYLLGLGRSFRTVQLISA 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  S     A+V+ + G     ++      R+    +IN   ++   +L   L + +
Sbjct: 62  IQAGMES-LRVVAKVKQVGGSHTAGVEFGPAGFRA----RINKDTVKKRSQLATQLPLLY 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
           +      +  G    RR++LD  +F ++P        ++R ++ RN +L       SW  
Sbjct: 117 MSSYSHVVLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHVLR--VHKPSWQQ 174

Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
             ++   +++  G +I   R  ++  L   + +      F  +       +  +F Q + 
Sbjct: 175 EINAWNKKLSTYGEQITSLREAILFKLQDSVSQL-----FTALAHQPISPVTMEFKQGWA 229

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
                  + L +    D  +  T  GPHR+++      K +     S G+QKV    + L
Sbjct: 230 RTV-RLEEILNESLNYDRAAGYTRYGPHRAEVAFYVDGKDVREIL-SRGQQKVFCYSLAL 287

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNE 360
           + A L+  T     I L+D+ ++ LD D R  L  ++  +G Q+F T  +    +   + 
Sbjct: 288 SQANLLYRTKEQNCIFLIDDFTSELDADHRKRLLTLLNKLGMQVFATTIESLGSEIKAHP 347

Query: 361 TAKFMRISNHQA 372
             K   +   Q 
Sbjct: 348 NIKEFHVKLGQV 359


>gi|1321906|emb|CAA63259.1| recF [Mycobacterium tuberculosis H37Rv]
          Length = 385

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 89/362 (24%), Positives = 153/362 (42%), Gaps = 24/362 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A + L      T+FVG NG GKTN++EA+ + +     R ++   +
Sbjct: 1   MYVRHLGLRDFRSWACVDLELHPGRTVFVGPNGYGKTNLIEALWYSTTLGSHRVSADLPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R+G+     ST    +G E   D+ I         V   ++N   +R   ++   LR  
Sbjct: 61  IRVGTDRAVISTIVVNDGRECAVDLEIATGR-----VNKARLNRSSVRSTRDVVGVLRAV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYF 178
              P    +  G   +RRR+LD +     P       ++ER++R R  LL          
Sbjct: 116 LFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARYRG 175

Query: 179 DS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG----- 230
           D          ++++AE G ++  AR++++N L+  + +  Q         S+       
Sbjct: 176 DRGVFDTLDLWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRASMD 235

Query: 231 --FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                 + D     L       L   R  +      L+GPHR DLI+   D+       S
Sbjct: 236 VTGPSEQSDIDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GFAS 294

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE   + V + LA  +L+    G  P+LLLD++ A LD  +R AL     +   Q+ +T
Sbjct: 295 HGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVLVT 352

Query: 349 GT 350
             
Sbjct: 353 AA 354


>gi|212697385|ref|ZP_03305513.1| hypothetical protein ANHYDRO_01955 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675577|gb|EEB35184.1| hypothetical protein ANHYDRO_01955 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 357

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 83/370 (22%), Positives = 161/370 (43%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +S+FRNY S  + F+    IF+GDN  GKTN+LE+I +L+  + F+     D+
Sbjct: 1   MWIQSLRLSKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         ++G+    +    ++ R + + + + +ND+      +L    ++  
Sbjct: 61  IMFNEKEMA-----LDGLIRKNESFKNVKIRVNENKKEIFVNDIKYDKNKDLKSLFKLVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182
             P    I       RR  +D ++ +++  ++    DF++++  RN++L           
Sbjct: 116 FTPEDLTIIKDGPNFRRNLIDDIIISVNFSYKALKKDFDKVLSQRNKVLKNQRSKYFKEE 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             + + Q+  L  KI   R + I+ +++   +           LS+    D         
Sbjct: 176 LMAFDQQIIRLNYKIYRYREKYISLINNYAKKNHSNLTENKEDLSIIYRPDI-----VAK 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             EEY +K    +  D    RT  G  R ++ +    K  +   GS G+Q+  ++ I LA
Sbjct: 231 DIEEYREKFSKNKSYDLKYYRTTAGIQRDEIDIIINGKD-SKKFGSQGQQRSAILNIKLA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +  LI NT+    I+L D++ + LDE + N L   +     Q  +T T+    D + + +
Sbjct: 290 NVNLIENTSQDKAIILFDDVFSELDEKRSNFLLENLGRF--QTIITATNTKSLDRV-DKS 346

Query: 363 KFMRISNHQA 372
           K  +I +   
Sbjct: 347 KIRKIKDGHI 356


>gi|210634750|ref|ZP_03298278.1| hypothetical protein COLSTE_02205 [Collinsella stercoris DSM 13279]
 gi|210158690|gb|EEA89661.1| hypothetical protein COLSTE_02205 [Collinsella stercoris DSM 13279]
          Length = 361

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 83/362 (22%), Positives = 161/362 (44%), Gaps = 12/362 (3%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
             L++ ++R++A   L  D   T+ VG N VGKTN++EA+  L+ G  FR+ S +++ R 
Sbjct: 6   TELSVVQYRSFAEYALRLDPHVTVLVGRNAVGKTNLVEALQLLTAGSSFRKPSSSELLRQ 65

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
           G+P+     AR+        + + LE  + +  R    N         +   L      P
Sbjct: 66  GAPAG---RARLLLEGEGRRLEMGLELAEGK--RSFTRNGKRT-TASGVRGVLPSVLFCP 119

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
               +    +  RR  LD     ++ ++ + +  +ER +  RN LL +    +      +
Sbjct: 120 DDLDMVKRSASARRAALDSFGVQLNDQYAKLLSTYERTVEQRNNLLRDCPP-ADLLEVWD 178

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD-GKFDQSFCALKEE 246
             +A  G ++ + R  ++  +    +E  +    PH    +      G+      A+ E+
Sbjct: 179 ESLAVTGAQLLMHRRALLARIRGHFVEVYRAI-APHETPDVAYESTLGELGDEREAIAEQ 237

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           + ++L   R  +     TL+GPHR ++     D       GS G+Q+ +++   +A  ++
Sbjct: 238 FRRELLARRADELRRGMTLVGPHRDEIAFTI-DGRAARDFGSQGQQRSIVLAWKIAEVQV 296

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFM 365
             +  G  P+LLLD++ + LD  +R A+   V D   Q  +T T+   F D + + A+ +
Sbjct: 297 TRDILGRPPLLLLDDVMSELDASRREAIMGFVAD-DIQTVITTTNLGYFTDRVLDRARVV 355

Query: 366 RI 367
            +
Sbjct: 356 HV 357


>gi|254435256|ref|ZP_05048763.1| hypothetical protein NOC27_2319 [Nitrosococcus oceani AFC27]
 gi|207088367|gb|EDZ65639.1| hypothetical protein NOC27_2319 [Nitrosococcus oceani AFC27]
          Length = 362

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 83/372 (22%), Positives = 149/372 (40%), Gaps = 18/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L+I  FRN   + L       I  G N  GKT+ LEAI  L  GR FR       
Sbjct: 1   MHITHLDIRNFRNLKHIELHPSKGVNILSGANSSGKTSFLEAIYLLGLGRSFRTVQLISA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  S     A+V+ + G     ++      R+    +IN   ++   +L   L + +
Sbjct: 61  IQAGMES-LRVVAKVKQVGGSHTAGVEFGPAGFRA----RINKDTVKKRSQLATQLPLLY 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
           +      +  G    RR++LD  +F ++P        ++R ++ RN +L       SW  
Sbjct: 116 MSSYSHVVLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHVLR--VHKPSWQQ 173

Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
             ++   +++  G +I   R  ++  L   + +      F  +       +  +F Q + 
Sbjct: 174 EINAWNKKLSTYGEQITSLREAILFKLQDSVSQL-----FTALAHQPISPVTMEFKQGWA 228

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
                  + L +    D  +  T  GPHR+++      K +     S G+QKV    + L
Sbjct: 229 RTV-RLEEILNESLNYDRAAGYTRYGPHRAEVAFYVDGKDVREIL-SRGQQKVFCYSLAL 286

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNE 360
           + A L+  T     I L+D+ ++ LD D R  L  ++  +G Q+F T  +    +   + 
Sbjct: 287 SQANLLYRTKEQNCIFLIDDFTSELDADHRKRLLTLLNKLGMQVFATTIESLGSEIKAHP 346

Query: 361 TAKFMRISNHQA 372
             K   +   Q 
Sbjct: 347 NIKEFHVKLGQV 358


>gi|257783818|ref|YP_003179035.1| DNA replication and repair protein RecF [Atopobium parvulum DSM
           20469]
 gi|257472325|gb|ACV50444.1| DNA replication and repair protein RecF [Atopobium parvulum DSM
           20469]
          Length = 363

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 85/369 (23%), Positives = 162/369 (43%), Gaps = 11/369 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K++ +++  FR +AS  +   AQ TIFVG N  GKTN +EA+  L+ G  FR+ + + +
Sbjct: 3   LKVEHVSLYNFRCFASKEIDLSAQTTIFVGKNAAGKTNTVEALQLLTAGYSFRKPTPSQL 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +       +       L +  I  E R     R    N    +  D ++  L    
Sbjct: 63  LLTDTSEAKIEISLTGDGRKLENTCIITERR-----RQFSKNGKKCQAAD-ISGTLMSIL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G +  RR   D      +  + +    + + +  RN+LL   + D +   
Sbjct: 117 FNPDDLSMIKGGASYRREEFDDFGRQANKSYFKVFSTYIKTVEQRNKLLKSDWPDENLLD 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFL-DGKFDQSFCA 242
           + +  +A  G  +  AR+ +   L+    E  Q+ +   H++++    + +   + S   
Sbjct: 177 AWDLSLARGGAILLHARIHLFERLAKKTCEIYQELSGGEHLEMNYISSIGEISLEASREE 236

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           + +++ + L + R  D   +++  GPHR D+      K      GS G+ + V++ + +A
Sbjct: 237 ISDQFLQALNEIRIDDIRRQQSTKGPHRDDVEFLIEGKE-ARNFGSQGQIRTVVLALKMA 295

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNET 361
              L     G  P+LLLD++ + LDED+R A+         Q  +T T+   F + + E 
Sbjct: 296 EVLLSEEILGEKPLLLLDDVMSELDEDRRKAIMEFAFH-DIQTVITTTNLGYFSEEILEK 354

Query: 362 AKFMRISNH 370
           A+ +R S+ 
Sbjct: 355 AQIVRFSDE 363


>gi|154707128|ref|YP_001423442.1| DNA replication and repair protein [Coxiella burnetii Dugway
           5J108-111]
 gi|226737784|sp|A9KEV0|RECF_COXBN RecName: Full=DNA replication and repair protein recF
 gi|154356414|gb|ABS77876.1| DNA replication and repair protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 357

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 93/366 (25%), Positives = 154/366 (42%), Gaps = 15/366 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +++FRN A + +   +Q   F G NG GKT+ILE+I +LS GR FR      + +
Sbjct: 4   IGSLKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQ 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F        G +    I + +E RD    RCL+IN           K L +  L 
Sbjct: 64  DNTDRFLIFITLYNGTQF---IPLGVE-RDCHGDRCLRINGETASSWSLAAKRLPLCSLS 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
               R        RR+FLD ++F ++P         +R ++ RN  L          +  
Sbjct: 120 AMSHRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAALK-AKLPLGEITHW 178

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +  + E G +++  R  ++     L  + +Q +  P   L    F       S       
Sbjct: 179 DKMLVEDGERLHQLRQNVVTEFRPLFTQMLQ-QFLPAYPLIGHYFRGWSEKYS------- 230

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
             ++L    K D     T  GP R+D  +   D        S G+QK+V   +  A   L
Sbjct: 231 LMEQLQINLKQDLQRGYTQAGPQRADFRLTLRDLPAQDIL-SQGQQKLVTYALHFAQGLL 289

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +   TG +PI L+D++ A LD +KR+ +  +V  + SQ+F++G D +    L   +    
Sbjct: 290 LKEKTGISPIYLIDDLPAELDANKRDCVIDLVNYLESQVFISGIDPNEI-RLPPHSTLFH 348

Query: 367 ISNHQA 372
           + + + 
Sbjct: 349 VKHGKV 354


>gi|83642920|ref|YP_431355.1| recombinational DNA repair ATPase (RecF pathway) [Hahella
           chejuensis KCTC 2396]
 gi|97180764|sp|Q2SQZ4|RECF_HAHCH RecName: Full=DNA replication and repair protein recF
 gi|83630963|gb|ABC26930.1| Recombinational DNA repair ATPase (RecF pathway) [Hahella
           chejuensis KCTC 2396]
          Length = 375

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/377 (22%), Positives = 158/377 (41%), Gaps = 10/377 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  +  +  RN +SL+L   A+  +F G+NG GK+++LE +  L  G  FR       
Sbjct: 1   MGLSRIAFTNLRNISSLKLDTSARLLLFHGNNGSGKSSLLEGVYLLGRGASFRTKELDYA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S      F      +      I +  +    +  ++IN    R + EL   L I  
Sbjct: 61  VSHLSDE-MVCFGEAVNEDAGKSFRIGVSRQKTGKLTRVRINGESARTLSELAAALPILI 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P      +G   ERRRF+D  VF ++ + +    ++ +L+  RN+LL  G    S  S
Sbjct: 120 VTPDTFGFINGGPGERRRFVDWGVFHVEHQFKVVWQNWRKLLLQRNKLLKSGNISRSELS 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + Q      +I+  R      L  +++E + KE+    +  +   L       +    
Sbjct: 180 AWDNQYVAYSDEISRYRDAYFAELKEILIESL-KESSEQTR-DIGDKLTITLSNGWYQND 237

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             +  +L    + D     T +GPHR+D+ V            S G+QK ++  ++L+  
Sbjct: 238 VNHMDQLASSVESDVKKGFTTLGPHRADIKVKVGGVHAKEVL-SRGQQKTLITHLYLSQL 296

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS----VFDSLNE 360
            ++   T   PI+L+D++ A LD   +  L   + + G+Q+F+T  DK     +F   N+
Sbjct: 297 EILRRRTNQRPIVLIDDVGAELDTGNQVTLLTRMLEKGAQVFVTVLDKQQSEYLFGHFNQ 356

Query: 361 TA--KFMRISNHQALCI 375
               +   +       +
Sbjct: 357 EYDTQMFHVEQGAVTKV 373


>gi|325915699|ref|ZP_08178004.1| DNA replication and repair protein RecF [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538116|gb|EGD09807.1| DNA replication and repair protein RecF [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 344

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/347 (21%), Positives = 138/347 (39%), Gaps = 13/347 (3%)

Query: 29  HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADI 88
             +  GDNG GKT++LEA+  ++ GR FR      + + G+          EG     + 
Sbjct: 1   MNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGASDLEVFVEWREGTGEAGER 60

Query: 89  SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
           S +   R        +++   +  +  L   L +    P    + SG    RRRFLD  +
Sbjct: 61  SRRAGLRHTGQEWTGRLDGEDVAQLGSLCAALAVITFEPGSHVLISGGGEPRRRFLDWGL 120

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           F ++P        + R ++ RN LL +G        + + ++AE G  +   R+  +  L
Sbjct: 121 FHVEPDFLALWRRYARALKQRNALLKQG-AQPRMLDAWDHELAESGETLTSRRLRYLERL 179

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
              ++        P + LS   F  G             A  L   R+ D  +  T  GP
Sbjct: 180 QERLIPVATAI-APSLGLSALEFAPGWKRHEVS-----LADALLLARERDRQNGYTSQGP 233

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           HR+D    +       A  S G+ K+  +   LA A   ++  G  P++ LD++ + LD 
Sbjct: 234 HRADWAPRFDALPGKDAL-SRGQAKLTALACLLAQAEDFAHERGEWPVIALDDLGSELDR 292

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF---MRISNHQA 372
             + ++ + +    +Q+ +T T+      L +  K      + + + 
Sbjct: 293 HHQASVLQRLAAAPTQVLITATET--PPGLADAGKLLYRFHVEHGKV 337


>gi|293191014|ref|ZP_06609058.1| RecF protein [Actinomyces odontolyticus F0309]
 gi|292820701|gb|EFF79667.1| RecF protein [Actinomyces odontolyticus F0309]
          Length = 398

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 154/397 (38%), Gaps = 31/397 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FR++    +      T+ VG NG GKTN++EA+++LS     R  +   +
Sbjct: 1   MRVSHLALDDFRSWKHGVVELPEGPTVLVGANGQGKTNLVEALAYLSTFSSHRVGAEGAL 60

Query: 65  TRIGSPSFFS----TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            RI      +       R   +    +  I+LE    ++ R  ++N   ++   E+   +
Sbjct: 61  VRIPIDEAEAAPGGAVIRARVVIFGREQVIELEIVRGKANRA-RVNRAQVK-PREILGVV 118

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--- 177
           R     P    +  G    RR FLD +   + P H     DF+R+ R R  L+       
Sbjct: 119 RTVVFAPEDLSLVRGDPSVRRSFLDDLATQLSPIHASVRSDFDRVARQRAALMKAAQASL 178

Query: 178 -----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTG 230
                 D S     + Q A L  +I   R  +++ L                H+ L+   
Sbjct: 179 RRGQSPDLSTLEIWDQQFAALSARITATRASIVSRLEEPAARSYDDVADSPRHLHLAFDA 238

Query: 231 FLD-----------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
            +D                   A  E     L   R+ ++     L+G HR DL +    
Sbjct: 239 SVDRVIGTDPDNPASADLTDVDAQTERMLAALASVREKETERGVNLVGAHRDDLTLSLGA 298

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
             +   + S GE   V + + L    L+S+  G  PIL+LD++ A LD  +R  L   + 
Sbjct: 299 MPVK-GYASHGESWSVALALRLGAFELLSD-DGDTPILILDDVFAELDSSRREGLA-ALA 355

Query: 340 DIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQALCI 375
               QI +T      + DSL+  A  +R+   +   I
Sbjct: 356 SKAEQIIVTCAVAGDLPDSLDHHALHVRLDPERGTVI 392


>gi|292490173|ref|YP_003525612.1| DNA replication and repair protein RecF [Nitrosococcus halophilus
           Nc4]
 gi|291578768|gb|ADE13225.1| DNA replication and repair protein RecF [Nitrosococcus halophilus
           Nc4]
          Length = 362

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/370 (20%), Positives = 146/370 (39%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L+I  FRN   +         IF G NG GKT++LEAI  L  GR FR +  A V
Sbjct: 1   MHIAHLDIRNFRNLEHIEFYPAKGLNIFTGANGSGKTSLLEAIYLLGLGRSFRSSQLASV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    S        +  +    + ++  +   R+    +IN   ++   +L   L + +
Sbjct: 61  VRGNMKSLRVVARVKQTTDAFQIVGVEFSSTGFRA----RINGNAVKRRSQLAAQLPLLY 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWC 183
           +      I  G    RR++LD  +F ++   R     + R ++ RN  L           
Sbjct: 117 MSSYSHLILDGGPRYRRQWLDWGLFHLESNFRDLWWRYHRALKQRNHALRTQMPSWRREI 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            + + ++A  G ++   R  +++ L   + +               G +  +F + +   
Sbjct: 177 DAWDRELATYGEQVTSFREAILSQLQESVSQLFAVLA------HQVGPVTMEFKRGWSRT 230

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L      D  +  T  GPHR+++      K +     S G+QKV    + L  
Sbjct: 231 I-ALGEVLKATLDYDRAAGYTRYGPHRAEVAFYASGKDVRDIL-SRGQQKVFCYSLALGQ 288

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNET 361
             L+        I L+D+ ++ LD D R  +  ++  +G Q+F+T  +   +   +  ++
Sbjct: 289 VELLCKIKEQHCIFLIDDFTSELDADHRRRVLALLNQLGIQVFVTTVETLDNELKAYPDS 348

Query: 362 AKFMRISNHQ 371
            +   +   +
Sbjct: 349 QQ-FHVELGK 357


>gi|169794209|ref|YP_001712002.1| recombination protein F [Acinetobacter baumannii AYE]
 gi|184156323|ref|YP_001844662.1| recombination protein F [Acinetobacter baumannii ACICU]
 gi|213155388|ref|YP_002317433.1| DNA replication, recombination and repair protein [Acinetobacter
           baumannii AB0057]
 gi|215481764|ref|YP_002323946.1| DNA replication and repair protein recF [Acinetobacter baumannii
           AB307-0294]
 gi|260558095|ref|ZP_05830306.1| recombinational DNA repair ATPase [Acinetobacter baumannii ATCC
           19606]
 gi|301345943|ref|ZP_07226684.1| recombination protein F [Acinetobacter baumannii AB056]
 gi|301512867|ref|ZP_07238104.1| recombination protein F [Acinetobacter baumannii AB058]
 gi|301594682|ref|ZP_07239690.1| recombination protein F [Acinetobacter baumannii AB059]
 gi|332854715|ref|ZP_08435502.1| DNA replication and repair protein RecF [Acinetobacter baumannii
           6013150]
 gi|332865595|ref|ZP_08436435.1| DNA replication and repair protein RecF [Acinetobacter baumannii
           6013113]
 gi|332873309|ref|ZP_08441264.1| DNA replication and repair protein RecF [Acinetobacter baumannii
           6014059]
 gi|259563348|sp|B7GUX7|RECF_ACIB3 RecName: Full=DNA replication and repair protein recF
 gi|259563349|sp|B7IBH5|RECF_ACIB5 RecName: Full=DNA replication and repair protein recF
 gi|259563350|sp|B2HZA5|RECF_ACIBC RecName: Full=DNA replication and repair protein recF
 gi|259563352|sp|B0VAF5|RECF_ACIBY RecName: Full=DNA replication and repair protein recF
 gi|169147136|emb|CAM84995.1| DNA replication, recombinaison and repair protein [Acinetobacter
           baumannii AYE]
 gi|183207917|gb|ACC55315.1| Recombinational DNA repair ATPase (RecF pathway) [Acinetobacter
           baumannii ACICU]
 gi|213054548|gb|ACJ39450.1| DNA replication, recombination and repair protein [Acinetobacter
           baumannii AB0057]
 gi|213987177|gb|ACJ57476.1| DNA replication and repair protein recF [Acinetobacter baumannii
           AB307-0294]
 gi|260408449|gb|EEX01756.1| recombinational DNA repair ATPase [Acinetobacter baumannii ATCC
           19606]
 gi|322506192|gb|ADX01646.1| recF, DNA replication, recombinaison and repair protein
           [Acinetobacter baumannii 1656-2]
 gi|332727872|gb|EGJ59274.1| DNA replication and repair protein RecF [Acinetobacter baumannii
           6013150]
 gi|332735247|gb|EGJ66324.1| DNA replication and repair protein RecF [Acinetobacter baumannii
           6013113]
 gi|332738515|gb|EGJ69387.1| DNA replication and repair protein RecF [Acinetobacter baumannii
           6014059]
          Length = 360

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 153/373 (41%), Gaps = 23/373 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     + 
Sbjct: 1   MHLTRLNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +              G+  +            + +++N   +    +L K L +  
Sbjct: 61  IQYEADDAIVFAQSATEKIGMQKL--------ASGEQLMKVNGDTVATQGQLAKLLPLQH 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P    I    +  RR+ LD ++F ++P        + R ++ RN LL        +  
Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 +++ G  ++  R+ ++   +      + +   P +++ L        +Q     
Sbjct: 173 EPWNKMLSDYGEILHSQRLSIVEQWNVYFQNDLSQL-LPDLEIELEYSPGFHTEQG---- 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L +  + D   R T  GPHR+DL +            S G++K++++ + L+ 
Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-SRGQKKLLIIALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359
             ++   +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D    K     L+
Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342

Query: 360 ETAKFMRISNHQA 372
            + +   + + Q 
Sbjct: 343 ISYQLFSVESGQV 355


>gi|254773056|ref|ZP_05214572.1| recombination protein F [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 385

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 153/376 (40%), Gaps = 22/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A   L      T+F+G NG GKTN+LEA+ + S     R  + A +
Sbjct: 1   MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       + ++ LE    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179
             P    +  G   ERRR+LD +     P       D+++++R R  LL          D
Sbjct: 117 FAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGD 176

Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234
                     ++++AE G ++  AR++++N L+  + +  Q          +     L  
Sbjct: 177 RGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGA 236

Query: 235 KFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
                  A   +Y        L   R  +      L+GPHR DL +   ++ +     S 
Sbjct: 237 AASAEVNAGDRDYLEAALLAGLAARRDAEMERGMCLVGPHRDDLELWLGER-VPKGFASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE   + + + LA   L+       P+LLLD++ A LD  +R A    V +   Q+ +T 
Sbjct: 296 GESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELDAARRRA-LAAVAESAEQVLVTA 353

Query: 350 TDKSVFDSLNETAKFM 365
                  +  +  +  
Sbjct: 354 AVLEDIPTGWQARRLF 369


>gi|262374721|ref|ZP_06067993.1| recombinational DNA repair ATPase [Acinetobacter junii SH205]
 gi|262310377|gb|EEY91469.1| recombinational DNA repair ATPase [Acinetobacter junii SH205]
          Length = 360

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/373 (21%), Positives = 154/373 (41%), Gaps = 23/373 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  LNI   RN  ++ L       IF G NG GKT+ILE+I  L+ GR FR       
Sbjct: 1   MQITRLNIERVRNLKTVALTELQPFNIFYGANGSGKTSILESIHLLATGRSFRTHIPKHY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +                     + +K     ++    +++N   I    +L K L +  
Sbjct: 61  IQHQCNDAIVFA-----QSATERVGMKKLISGEQ---LIKVNGDTIATQGQLAKLLPLQH 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P    I    +  RR+ LD ++F ++P        + R ++ RN LL        S  
Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNSLLKTRRNLSLSEL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 ++E G  ++  R+ ++   +    E +Q+   P I + L  +     +Q     
Sbjct: 173 EPWNKMLSEYGEILHSQRISIVEQWNQYFREDLQQL-LPDIDIELEYYSGFHTEQG---- 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L    + D   R T  GPHR+DL +            S G++K++++ + L+ 
Sbjct: 228 ---LFQDLIQQHQKDLERRYTEYGPHRADLRLKTPQGNADDVL-SRGQKKLLIMALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS----VFDSLN 359
             ++   +    ++LLD+++A LD   +  L   ++ +GSQ+F+T  D +        L+
Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDVAAQQRLIERLSQLGSQVFLTTLDHASVLKHLHDLS 342

Query: 360 ETAKFMRISNHQA 372
            + +   + + Q 
Sbjct: 343 ISFQLFHVVHGQV 355


>gi|257065524|ref|YP_003151780.1| DNA replication and repair protein RecF [Anaerococcus prevotii DSM
           20548]
 gi|256797404|gb|ACV28059.1| DNA replication and repair protein RecF [Anaerococcus prevotii DSM
           20548]
          Length = 359

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/370 (22%), Positives = 156/370 (42%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK L ++ FRNY    + F+    IF+GDN  GKTN+LE++ +L+    F++    D+
Sbjct: 1   MRIKDLKLNNFRNYFYENVEFNKDSNIFIGDNAQGKTNLLESVYYLANASSFKKIRDKDI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G          +       ++ I+++  D    + + +N V      +L    +I  
Sbjct: 61  VRFGQSQ-MKLAGTIRKGRSFKEVFIEVKDND----KSIFVNGVKYDRRKDLRSLFKIVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182
             P    I       RR  +D ++  ID  ++    D+++++  RN+LL +         
Sbjct: 116 FTPEDLGIIKDGPNRRRDLIDEIIEEIDLSYKANKRDYDKILYQRNKLLKKQKAPYFKEQ 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             + +  + +L  KI   R + I  +     E+         +L L+   D +       
Sbjct: 176 LEAFDKSLTKLSYKIYKTRDKFIKIVDKFASEFHSSLTENKEELKLSYKADIE-----AK 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
              EY +     R +D     +  G HR ++ +    K  T +  S G+Q+  ++ I LA
Sbjct: 231 SLTEYEEVFRSARDLDFKYLTSQRGIHRDEIEISINGKN-TKSFASQGQQRSAILNIRLA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
             RLI   TG   ++L D++ + LDE +   L   +   G Q  +T T+    + + +  
Sbjct: 290 EVRLIKEVTGDEAVILFDDVFSELDEKRSMFLLENLK--GFQTIITATNTKSLEYV-DRE 346

Query: 363 KFMRISNHQA 372
           K   I + + 
Sbjct: 347 KISYILDGKI 356


>gi|159900239|ref|YP_001546486.1| DNA replication and repair protein RecF [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|226737805|sp|A9B775|RECF_HERA2 RecName: Full=DNA replication and repair protein recF
 gi|159893278|gb|ABX06358.1| DNA replication and repair protein RecF [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 385

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 163/387 (42%), Gaps = 28/387 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + +FR Y SL L       +F G N  GKT ILEA+ +L+  R  R +   ++
Sbjct: 1   MYVSRLQLQDFRIYRSLNLALPPGVCLFYGANAAGKTTILEALYYLATTRSLRASVEREL 60

Query: 65  TRIGSPS------FFSTFARVEGMEGLADISIKLETRDD---------RSVRCLQINDVV 109
             + +        F    A ++        +I++  +            + + ++IN + 
Sbjct: 61  IALEAAGDLGLPPFARLAASLQPQPEAEMQTIEIVLQRKFGADGDLAPTTSKTIRINKIA 120

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            R +D L   LR+    P    + +G   ERRR+LD  +  ID R+ R +  + +++  R
Sbjct: 121 RRALD-LIGQLRVVMFAPQDLELVTGAPAERRRYLDVTLSQIDGRYVRALSRYNQVLTQR 179

Query: 170 NRLLTEGY-----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           N LL               +  + ++A+ GV +   R   +  L  L      + +   +
Sbjct: 180 NGLLRTSRERGRAASEQDLAFWDEELAKAGVYVLRERRRAVTTLDQLAQRLYAEISGSDL 239

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
            L L        D +       +   L   R+ +     TLIGPHR DL +   ++ +  
Sbjct: 240 DLRLNY-----LDTTPAHDVPSFQAALKQLRREERERGVTLIGPHRDDLSIQLAEREVG- 293

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
           + GS G+Q+   + + LA A L+ + TG  P+LLLD++ + LD+ +R  L   +     Q
Sbjct: 294 SFGSRGQQRASTLALRLAEAELMHSRTGDRPVLLLDDLLSELDQKRREHLLTTIVRPQQQ 353

Query: 345 IFMTGTDKSVFD-SLNETAKFMRISNH 370
             +T TD   F  +       M + + 
Sbjct: 354 TLITATDLDDFSPNFLSQITRMHVDHG 380


>gi|218245953|ref|YP_002371324.1| recombination protein F [Cyanothece sp. PCC 8801]
 gi|257059001|ref|YP_003136889.1| recombination protein F [Cyanothece sp. PCC 8802]
 gi|226737787|sp|B7K127|RECF_CYAP8 RecName: Full=DNA replication and repair protein recF
 gi|218166431|gb|ACK65168.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 8801]
 gi|256589167|gb|ACV00054.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 8802]
          Length = 380

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 90/383 (23%), Positives = 173/383 (45%), Gaps = 21/383 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++S FRNY   ++ FD Q TI +G+N  GK+N+LEA+  L+  +  R     D 
Sbjct: 1   MYLKTLHLSAFRNYREQQIEFDHQKTILLGNNAQGKSNVLEAVELLATLKSHRTNRDRDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +     A++E   G +D++I L +      R L +N   +R   E    L    
Sbjct: 61  ILEG-ETIGQITAKIERNYGTSDLAITLRSPGR---RTLTLNHEHLRRHLEFLGSLNAVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
                  +  G    RR +LD ++  ++P +   +  + +++R RN LL +         
Sbjct: 117 FSSLDLDLVRGSPDARRNWLDTLLVQLEPIYAHILQQYYQVLRQRNALLKDLRKTATEEG 176

Query: 178 ------FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                    +     + Q+AE G ++   R  +I  L  L   + Q  +     L +   
Sbjct: 177 KSDHLSAQMTQLHLWDQQLAETGSRVTRRRARVIERLIPLAQIWHQNISGGQEILQIDYL 236

Query: 232 LDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            +  + +     +++ +  K+   R  +     T++GPHR D+           ++GS G
Sbjct: 237 PNVSWQEDEPLEVQQAFLAKIEQRRLAEQQLGTTVVGPHRDDVEFTINGTPAK-SYGSQG 295

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+ +++ + LA  +LI    G  P+LLLD++ A LD +++N L  ++     Q F+T T
Sbjct: 296 QQRTLVLALKLAELKLIEEVIGEPPLLLLDDVLAELDPNRQNQLLEVIQG-RFQTFITTT 354

Query: 351 DKSVFDS-LNETAKFMRISNHQA 372
               FD+   ++++ +++   + 
Sbjct: 355 YLHSFDAQWLQSSQILKVEAGKI 377


>gi|254515867|ref|ZP_05127927.1| DNA replication, recombinaison and repair protein [gamma
           proteobacterium NOR5-3]
 gi|219675589|gb|EED31955.1| DNA replication, recombinaison and repair protein [gamma
           proteobacterium NOR5-3]
          Length = 370

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 145/373 (38%), Gaps = 16/373 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI   RN     L   + H +  G NG GKT++LEA   L   R FR      +  
Sbjct: 4   LASLNIHHLRNLTEASLGPLSLHNVIYGINGSGKTSLLEAAHILGTARSFRAGGAKSLIT 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  ++     R     G   + ++ +     S+R         R V +L   L +  + 
Sbjct: 64  HGEQTYVVQGNRESPGGGCVSLGVQRQKGGGMSLRVA---GEPSRSVSQLADELPLLLIN 120

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
                +  G    RRRF+D  VF ++   R     F+R +  RN LL  G  D+S     
Sbjct: 121 ADSFDLLVGEPANRRRFMDWGVFHVEHNLRDHRRRFQRALTQRNHLLRRGKLDASELEVW 180

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
              +A     ++  R   + AL  +    V  E  P I     G +D  + + + A    
Sbjct: 181 TRDLAVHAELVSAGRDRFLAALKEVFEPLV-NELAPEI-----GPVDLAYRRGWDASL-G 233

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA  L      D     T  GP R+D+ V     +      S G+QK+++  + LA  ++
Sbjct: 234 YADALQRSLASDQEQGFTQSGPQRADIRVTVGGYSAADTL-SRGQQKLLICALKLAQGQI 292

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS--LNETAK- 363
           ++   G   + L+D++ + LD ++   + R +  +  Q  +T   +S      L   A+ 
Sbjct: 293 LAGQRGG-VLYLIDDLPSELDAERCERVCRALAAMRVQTLITCVSRSAIPVEWLGSGAEV 351

Query: 364 -FMRISNHQALCI 375
               +   +   +
Sbjct: 352 AMFHVEQGRVTLV 364


>gi|259563367|sp|A3M0Q6|RECF_ACIBT RecName: Full=DNA replication and repair protein recF
 gi|193075923|gb|ABO10500.2| DNA replication recombination and repair protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 360

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 153/373 (41%), Gaps = 23/373 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     + 
Sbjct: 1   MHLTRLNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +              G+  +            + +++N   +    +L K L +  
Sbjct: 61  IQYEADDAIVFAQSATEKIGMQKL--------ASGEQLMKVNGDTVATQGQLAKLLPLQH 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P    I    +  RR+ LD ++F ++P        + R ++ RN LL        +  
Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 +++ G  ++  R+ ++   +      + +   P +++ L        +Q     
Sbjct: 173 EPWNKMLSDYGEILHSQRLSIVEQWNVYFQNDLSQL-LPDLEIELEYSPGFHTEQG---- 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L +  + D   R T  GPHR+DL +            S G++K++++ + L+ 
Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-SRGQKKLLIIALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359
             ++   +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D    K     L+
Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342

Query: 360 ETAKFMRISNHQA 372
            + +   + + Q 
Sbjct: 343 ISYQLFSVESGQV 355


>gi|239503907|ref|ZP_04663217.1| recombination protein F [Acinetobacter baumannii AB900]
 gi|323516068|gb|ADX90449.1| recombination protein F [Acinetobacter baumannii TCDC-AB0715]
          Length = 360

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 152/373 (40%), Gaps = 23/373 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     + 
Sbjct: 1   MHLTRLNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +              G+  +            + +++N   +    +L K L +  
Sbjct: 61  IQYEADDAIVFAQSATEKIGMQKL--------ASGEQLMKVNGDTVATQGQLAKLLPLQH 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P    I    +  RR+ LD ++F ++P        + R ++ RN LL        +  
Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 ++  G  ++  R+ ++   +      + +   P +++ L        +Q     
Sbjct: 173 EPWNKMLSNYGEILHSQRLSIVEQWNVYFQNDLSQL-LPDLEIELEYSPGFHTEQG---- 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L +  + D   R T  GPHR+DL +            S G++K++++ + L+ 
Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-SRGQKKLLIIALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359
             ++   +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D    K     L+
Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342

Query: 360 ETAKFMRISNHQA 372
            + +   + + Q 
Sbjct: 343 ISYQLFSVESGQV 355


>gi|169632032|ref|YP_001705768.1| recombination protein F [Acinetobacter baumannii SDF]
 gi|259563351|sp|B0VMK2|RECF_ACIBS RecName: Full=DNA replication and repair protein recF
 gi|169150824|emb|CAO99424.1| DNA replication, recombinaison and repair protein [Acinetobacter
           baumannii]
          Length = 360

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/373 (20%), Positives = 153/373 (41%), Gaps = 23/373 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     + 
Sbjct: 1   MHLTRLNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +              G+  +            + +++N   +    +L K L +  
Sbjct: 61  IQYEADDAIVFAQSATEKIGMQKL--------ASGEQLMKVNGDTVATQGQLAKLLPLQH 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P    I    +  RR+ LD ++F ++P        + R ++ RN LL        +  
Sbjct: 113 IDPQSTEIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 ++  G  ++  R+ ++   +      + +   P +++ L        +Q     
Sbjct: 173 EPWNKMLSNYGEILHSQRLSIVEQWNVYFQNDLSQL-LPDLEIELEYSPGFHTEQG---- 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L +  + D   R T  GPHR+DL +            S G++K++++ + L+ 
Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTLFGHADDVL-SRGQKKLLIIALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS----VFDSLN 359
             ++   +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D++        L+
Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDRASVKKHLHDLS 342

Query: 360 ETAKFMRISNHQA 372
            + +   + + Q 
Sbjct: 343 ISYQLFSVESGQV 355


>gi|293611382|ref|ZP_06693678.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826254|gb|EFF84623.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123496|gb|ADY83019.1| DNA replication, recombinaison and repair protein [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 360

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 154/373 (41%), Gaps = 23/373 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     + 
Sbjct: 1   MHLTRLNIERVRNLKTVALQGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +              G+  +            + +++N   +    +L K L +  
Sbjct: 61  IQYSAEDAIVFAQSATEKIGMQKL--------ASGEQLMKVNGDTVATQGQLAKLLPLQH 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P    I    +  RR+ LD ++F ++P        + R ++ RN LL        +  
Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNISLADL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 +++ G  ++  R+ ++   +      + +   P +++ L        +Q     
Sbjct: 173 EPWNKMLSDYGEILHSQRLSIVEQWNVFFQNDLSQL-LPDLEIELEYSPGFHTEQG---- 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L +  + D   R T  GPHR+DL +        +   S G++K++++ + L+ 
Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADVVL-SRGQKKLLIIALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359
             ++   +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D    K     L+
Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342

Query: 360 ETAKFMRISNHQA 372
            + +   + + Q 
Sbjct: 343 ISYQLFNVESGQV 355


>gi|42521653|ref|NP_967033.1| DNA repair and genetic recombination protein [Bdellovibrio
           bacteriovorus HD100]
 gi|39574183|emb|CAE77687.1| DNA repair and genetic recombination protein [Bdellovibrio
           bacteriovorus HD100]
          Length = 374

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 88/380 (23%), Positives = 176/380 (46%), Gaps = 18/380 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +  + L +  FRNY  + L F  +  +F+G+NG GKTN+LEA+  +S G  FR +  + +
Sbjct: 1   MIFERLRLVNFRNYRDVVLSFSPRVNVFLGENGQGKTNLLEAMYMISQGDSFRYSDNSTL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +       + ++ +    D+  KL+    +S + L +ND  +   D + K      
Sbjct: 61  INTNTSE-----SVIQALITQNDLHYKLKLGLSKSRKVLTLNDKRVNSAD-IRKIFASVV 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GY 177
             P         +  RR  +D ++   D ++ + + D+ + ++ RN++L           
Sbjct: 115 FSPESLSSIKEGADHRRELVDELLVTFDRKNAQLIADYRKALKTRNKILKNFLEGLQDKV 174

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-PHIKLSLTGFLDGKF 236
              +   S+  Q   L   +  AR+  ++ LS      +Q  +    + +S+   +  + 
Sbjct: 175 VTQNLLESLNPQFVRLATDLTHARITALHGLSKDFNNAMQYISGNSSVDISVEYLVSDQN 234

Query: 237 DQSF--CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
             SF    ++    K+L +    +  S  +L+GPH+ D++  Y  K       S G+Q+ 
Sbjct: 235 AVSFTREEVENAITKRLRELHDAELSSGTSLVGPHKHDIVFLYGQKDSRF-FCSQGQQRA 293

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           +++   +A         G  P+L+LD++ + LD+ KR+AL   + +I +QIF+T TD ++
Sbjct: 294 IILSFKMAQIVYHRKAHGTYPVLMLDDVLSELDKAKRDALITFLHEINTQIFVTTTDFTL 353

Query: 355 FDSLN-ETAKFMRISNHQAL 373
            +S + +  + +RI + Q L
Sbjct: 354 PESFSLDQLRVVRIKDGQIL 373


>gi|330835986|ref|YP_004410627.1| DNA replication and repair protein recF [Spirochaeta coccoides DSM
           17374]
 gi|329747889|gb|AEC01245.1| DNA replication and repair protein recF [Spirochaeta coccoides DSM
           17374]
          Length = 359

 Score =  259 bits (663), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 145/367 (39%), Gaps = 12/367 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L+I  FRN     +  DA+  + VG+NG GKTN LEA+  L  G  FR  +  + 
Sbjct: 1   MRILSLDIHCFRNIRKASVDTDARSVMLVGENGQGKTNFLEALYVLCYGTSFRTPNLREA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F      V+      +I +K      +  R + I+   I    EL   +    
Sbjct: 61  VSHDGRGFSVKADFVDDSGNHHEIQVK----HVQGKRSIFIDRKEIYDRKELIYTIPCIV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                     G    RRRF D+ +   +P        +  ++R RN  L EG    S   
Sbjct: 117 FCHDDIEFVRGEPEARRRFFDQTMSMYNPLFFDDSRRYRNILRQRNAALKEGRL--SLVP 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+A  G+ I  AR   +   + +     +  +   +++S+      K  ++    +
Sbjct: 175 IYDFQLARYGMSIQKARKAAVKEFNDIFPRMYRDVSGTDLEISVEYQPSWKMAENAEDAE 234

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E  ++ L    + D   + T  G HR   IV   D+  +   GSTG+ ++  + + +A A
Sbjct: 235 EILSRAL----ERDVRMQTTCSGVHRDKFIVKDADRPFSQT-GSTGQLRLASLILRMAQA 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363
                 TG  P+LL+D++   LD  +R      + D     F    ++  F SL +E   
Sbjct: 290 GFFFGKTGKEPVLLIDDVLLELDVTRRGRFLSHIEDYSQAFFTFLPEEKYFSSLEDEKML 349

Query: 364 FMRISNH 370
              +   
Sbjct: 350 SYTVEGG 356


>gi|154508242|ref|ZP_02043884.1| hypothetical protein ACTODO_00736 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797876|gb|EDN80296.1| hypothetical protein ACTODO_00736 [Actinomyces odontolyticus ATCC
           17982]
          Length = 398

 Score =  259 bits (662), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 151/397 (38%), Gaps = 31/397 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FR++    +      T+ VG NG GKTN++EA+++LS     R  +   +
Sbjct: 1   MRVSHLALDDFRSWKHGVVELPEGPTVLVGANGQGKTNLVEALAYLSTFSSHRVGAEGAL 60

Query: 65  TR--IGSPSFFSTFARVEGMEGL--ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            R  I         A +         +  I+LE    ++ R  +IN   ++   E+   +
Sbjct: 61  VRIPIDEAEAAPGGAVIRARVVTFGREQVIELEIVRGKANRA-RINRAQVK-PREILGIV 118

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--- 177
           R     P    +  G    RR FLD +   + P H     DF+R+ R R  L+       
Sbjct: 119 RTVVFAPEDLSLVRGDPSVRRSFLDDLATQLSPIHASVRSDFDRVARQRAALMKAAQASL 178

Query: 178 -----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTG 230
                 D S     + Q A L  +I   R  +++ L                H+ L+   
Sbjct: 179 RRGQSPDLSTLEIWDQQFAALSARITATRASIVSRLEEPAARSYDDVADSPRHLHLAFDA 238

Query: 231 FLD-----------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
            +D                   A  E     L   R+ ++     L G HR DL +    
Sbjct: 239 SVDRVIGTDPDNPASADLTDVDAQTERMLAALASVREKETERGVNLAGAHRDDLALSLGA 298

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
             +   + S GE   V + + L    L+S+  G  PIL+LD++ A LD  +R  L   + 
Sbjct: 299 MPVK-GYASHGESWSVALALRLGAFELLSD-DGDTPILILDDVFAELDSSRREGLA-ALA 355

Query: 340 DIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQALCI 375
               QI +T      +  SL+  A  +R+   +   I
Sbjct: 356 SKAEQIIVTCAVAGDLPASLDHHALHVRLDPERGTVI 392


>gi|260553770|ref|ZP_05826040.1| recombinational DNA repair ATPase [Acinetobacter sp. RUH2624]
 gi|260405074|gb|EEW98574.1| recombinational DNA repair ATPase [Acinetobacter sp. RUH2624]
          Length = 360

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/373 (20%), Positives = 153/373 (41%), Gaps = 23/373 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR     + 
Sbjct: 1   MHLTRLNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +              G+  +            + +++N   +    +L K L +  
Sbjct: 61  IQYEADDAIVFAQSATEKIGMQKL--------ASGEQLMKVNGDTVATQGQLAKLLPLQH 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P    I    +  RR+ LD ++F ++P        + R ++ RN LL        +  
Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 ++  G  ++  R+ ++   +      + ++  P +++ L        +Q     
Sbjct: 173 EPWNKMLSNYGEILHSQRLSIVEQWNVYFQNDL-RQLLPDLEIELEYSPGFHTEQG---- 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L +  + D   R T  GPHR+DL +            S G++K++++ + L+ 
Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADDVL-SRGQKKLLIIALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359
             ++   +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D    K     L+
Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342

Query: 360 ETAKFMRISNHQA 372
            + +   + + Q 
Sbjct: 343 ISYQLFSVESGQV 355


>gi|328954617|ref|YP_004371950.1| DNA replication and repair protein RecF [Coriobacterium glomerans
           PW2]
 gi|328454941|gb|AEB06135.1| DNA replication and repair protein RecF [Coriobacterium glomerans
           PW2]
          Length = 375

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 152/371 (40%), Gaps = 15/371 (4%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           + L + ++R++    L  D   T+  G N VGKTN++EA+  L+ G+ FR+AS +++ R 
Sbjct: 6   RSLRLRDYRSFERFSLDLDPGTTVLSGRNAVGKTNLIEALQLLTFGQSFRKASPSELIRD 65

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
           G+         +    G  DI + L     +  R    N    R    +   +      P
Sbjct: 66  GAERAVLD---LNLSGGGRDIDLGLVATAGK--RAFSRNGKPCRASS-IRGVMPSVLFCP 119

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
               +    +  RR  LD     +  R+ + +  + R++  RN LL +         + +
Sbjct: 120 DHLDMVKRSAGVRRGALDDFGTQLSARYAQLVGSYGRIVEQRNALLRDVALSDGLLDAWD 179

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFD-----QSFC 241
             + E G  +   R+ ++  L + +            + +     +    D         
Sbjct: 180 DALIETGCALIAHRISLLARLRAAMRRIHASIAPGEQMDVGYRASICPTEDLLTERADRA 239

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            L+  Y   L   R  +     +L+GPHR ++      +    +  S G+Q+ +++   +
Sbjct: 240 TLERRYRGALAAARPDEIRRCVSLMGPHRDEIAFTVAGRD-ARSFASQGQQRTLVLSWKI 298

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNE 360
           A   +     G  P+LLLD++ + LDE +R+A+   V + G Q  ++ T+   F  S+  
Sbjct: 299 AEVDVACEILGAPPLLLLDDVMSELDEPRRSAVMEFVEE-GIQTVISTTNLGYFSSSMLR 357

Query: 361 TAKFMRISNHQ 371
            AK + I N +
Sbjct: 358 RAKVVTIGNER 368


>gi|6969272|gb|AAF33693.1| putative recF [Mycobacterium avium subsp. paratuberculosis]
          Length = 385

 Score =  259 bits (661), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 153/376 (40%), Gaps = 22/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A   L      T+F+G NG GKTN+LEA+ + S     R  + A +
Sbjct: 1   MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       + ++ LE    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179
             P    +  G   ERRR+LD +     P       D+++++R R  LL          D
Sbjct: 117 FAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRSD 176

Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234
                     ++++AE G ++  AR++++N L+  + +  Q          +     L  
Sbjct: 177 RGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGA 236

Query: 235 KFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
                  A   +Y        L   R  +      L+GPHR DL +   ++ +     S 
Sbjct: 237 AASAEVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQ-VAKGFASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE   + + + LA   L+       P+LLLD++ A LD  +R A    V +   Q+ +T 
Sbjct: 296 GESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELDAARRRA-LAAVAESAEQVLVTA 353

Query: 350 TDKSVFDSLNETAKFM 365
                  +  +  +  
Sbjct: 354 AVLEDIPTGWQARRLF 369


>gi|41406101|ref|NP_958937.1| recombination protein F [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|45645207|sp|Q9L7L5|RECF_MYCPA RecName: Full=DNA replication and repair protein recF
 gi|41394449|gb|AAS02320.1| RecF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 385

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 153/376 (40%), Gaps = 22/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A   L      T+F+G NG GKTN+LEA+ + S     R  + A +
Sbjct: 1   MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       + ++ LE    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179
             P    +  G   ERRR+LD +     P       D+++++R R  LL          D
Sbjct: 117 FAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGD 176

Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234
                     ++++AE G ++  AR++++N L+  + +  Q          +     L  
Sbjct: 177 RGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGA 236

Query: 235 KFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
                  A   +Y        L   R  +      L+GPHR DL +   ++ +     S 
Sbjct: 237 AASAEVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQ-VAKGFASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE   + + + LA   L+       P+LLLD++ A LD  +R A    V +   Q+ +T 
Sbjct: 296 GESWSLALSLRLAAFELL-RADESDPVLLLDDVFAELDAARRRA-LAAVAESAEQVLVTA 353

Query: 350 TDKSVFDSLNETAKFM 365
                  +  +  +  
Sbjct: 354 AVLEDIPTGWQARRLF 369


>gi|330994266|ref|ZP_08318194.1| DNA replication and repair protein recF [Gluconacetobacter sp.
           SXCC-1]
 gi|329758733|gb|EGG75249.1| DNA replication and repair protein recF [Gluconacetobacter sp.
           SXCC-1]
          Length = 374

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 121/368 (32%), Positives = 193/368 (52%), Gaps = 7/368 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +++FRNY  L        T+  G NG GKTN+LEA+S L+PGRG R A   ++ R
Sbjct: 4   VNRLVLTDFRNYRHLSWRPQRAVTVITGPNGSGKTNLLEALSLLAPGRGLRGARMDELPR 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDR---SVRCLQINDVVIRVVDELNKHLRIS 123
            G  + +   A V  + G   + + L T  D      R  +++   +R  D ++ +    
Sbjct: 64  HG-EALWGIAADVADLPGPDGLPVSLATGADPLRPERRTFRVDGQTLRNRDGISGYFAAV 122

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P MDR+F   +  RRRFLDR+V A++P H R +   +R M  R R+L +   D  W 
Sbjct: 123 WLTPQMDRLFQEGAAGRRRFLDRLVLALEPGHAREVAAHDRAMLQRGRVLAQYGADPHWL 182

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSFCA 242
           +++E  MA   V    AR +M+  L++     +  + FP  +L+L   +  +   +   A
Sbjct: 183 AALERTMARHAVAATAARADMVARLNADGQALL--DGFPAARLALDCVIARRLAHEPALA 240

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++  A+ L   R +D     +  G HR+DL +            STG+QK +LVGI L+
Sbjct: 241 VEDWLAECLAGTRAVDRQRGGSRFGAHRADLHMADRLTDRPAGQSSTGQQKALLVGIILS 300

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HAR+++   G AP+LLLDE   HLD  +R+ALF  +  + + + +TGTD+  FD L ++A
Sbjct: 301 HARILTACRGQAPLLLLDEPLVHLDAARRDALFHAMGRMRTGVMLTGTDREQFDPLRQSA 360

Query: 363 KFMRISNH 370
           +F+     
Sbjct: 361 EFVTPGEG 368


>gi|325926217|ref|ZP_08187575.1| DNA replication and repair protein RecF [Xanthomonas perforans
           91-118]
 gi|325543399|gb|EGD14824.1| DNA replication and repair protein RecF [Xanthomonas perforans
           91-118]
          Length = 344

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 73/345 (21%), Positives = 133/345 (38%), Gaps = 9/345 (2%)

Query: 29  HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADI 88
             +  GDNG GKT++LEA+  ++ GR FR      + + G+          EG     + 
Sbjct: 1   MNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGLIQQGANDLEVFVEWKEGNGAAGER 60

Query: 89  SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
           + +   R        +++   +  +  L   L +    P    + SG    RRRFLD  +
Sbjct: 61  TRRAGLRHSGQEWTGRLDGEDVAQLGALCAALAVVTFEPGSHVLISGGGEPRRRFLDWGL 120

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           F ++P        + R ++ RN LL +G        + + ++AE G  +   R   +  L
Sbjct: 121 FHVEPDFLTMWRRYARALKQRNALLKQG-AQPRMLDAWDHELAESGESLTSRRTRYLERL 179

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
              ++        P + LS   F  G             A  L   R+ D  +  T  GP
Sbjct: 180 QERLVPVADAI-APSLGLSALTFAPGWKRHEVS-----LADALLLARERDRQNGYTSQGP 233

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           HR+D +  +       A  S G+ K+  +   LA A   +   G  P++ LD++ + LD 
Sbjct: 234 HRADWVPSFQALPGRDAL-SRGQAKLSALACLLAQAEDFAYERGEWPVIALDDLGSELDR 292

Query: 329 DKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAKFMRISNHQA 372
             +  + + +    +Q+ +T T+            +   + +   
Sbjct: 293 HHQGRVLQRLASAPAQVLITATETPPGLADAGALLQQFHVEHGHI 337


>gi|254412109|ref|ZP_05025884.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181075|gb|EDX76064.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 382

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 87/384 (22%), Positives = 168/384 (43%), Gaps = 22/384 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L + +FRNY    + F+A  TI VG+N  GK+N+LEA+  LS  +  R     ++
Sbjct: 1   MYLKCLKLRQFRNYRDCLVNFEAPKTILVGNNAQGKSNLLEAVELLSTLKSHRSGRDREM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +       A +E   G  ++ + L ++     R + +N   +R   +    L    
Sbjct: 61  VLEDASMG-QIQALLERAYGSVELGLTLRSQGR---RTVALNRESLRRQLDFLGILNAVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
                  +  G    RR +LD ++  ++P +   +  + +++R RN LL           
Sbjct: 117 FSSLDLDLVRGSPERRRNWLDSILTQLEPIYAYILQQYNQVLRQRNALLKTIRKQEEERT 176

Query: 183 ------------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                        +  +AQ+A  G ++   R  ++  L+ L   +    +     L +T 
Sbjct: 177 PEGVISKQPQTELALWDAQLATAGSRVTRRRARVLQRLAPLAQSWHSSISGKTELLEVTY 236

Query: 231 FLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
             +   +     A+++ +  KL   R  +     TL+GPHR D+     ++    ++GS 
Sbjct: 237 APNVNLEKDDPEAVQQAFLDKLHHRRFPEQRQGITLVGPHRDDVEFTI-NQTPARSYGSQ 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q+ +++ + LA  +LI    G  P+LLLD++ A LD +++N L   + D   Q  +T 
Sbjct: 296 GQQRTLVLALKLAELKLIEEVVGEPPLLLLDDVLAELDPNRQNQLLDAIQD-RFQTLITT 354

Query: 350 TDKSVFDS-LNETAKFMRISNHQA 372
           T    FD+    +++ + +   Q 
Sbjct: 355 THLGAFDAQWLNSSQILSVQAGQI 378


>gi|318079376|ref|ZP_07986708.1| recombination protein F [Streptomyces sp. SA3_actF]
          Length = 312

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/317 (25%), Positives = 129/317 (40%), Gaps = 17/317 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y    +  +   T FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYERAEVSLEPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+   F   A  +G        ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRAGAERAFVRAAVTQGERSQL---VELEINPGRANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARHPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLD 233
              D S     +  +A  G ++   R ++I AL  L+ +  ++         L       
Sbjct: 177 RTLDLSTLDIWDQHLARAGAELLARRTDLIAALQPLVDKTYEQLAPGGGPALLEYRPSAP 236

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           G   Q       +    L + RK +     TL+GPHR   ++          + S GE  
Sbjct: 237 GT-AQGREEFYAQLLAALGEVRKQEIERGVTLVGPHRD-DLLLKLGDLPAKGYASHGESW 294

Query: 294 VVLVGIFLAHARLISNT 310
              + + LA   L+   
Sbjct: 295 SYALALRLASYDLLRAE 311


>gi|121998015|ref|YP_001002802.1| DNA replication and repair protein RecF [Halorhodospira halophila
           SL1]
 gi|121589420|gb|ABM62000.1| DNA replication and repair protein RecF [Halorhodospira halophila
           SL1]
          Length = 349

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/365 (23%), Positives = 148/365 (40%), Gaps = 21/365 (5%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           + L +  FRN A  +L       +  G NG GKT++LEAI FLS  R FR      +   
Sbjct: 2   ERLEVHGFRNLADTQLRPHPHLNVVTGPNGAGKTSLLEAIYFLSRVRSFRTRQNDRLIGW 61

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
           G+        R     G A                L++N         L   L +  +  
Sbjct: 62  GAEEARVVAVRGHDRLGAARTP---------GHTRLRLNGADAHTRSALAARLPVQLMNT 112

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
              R+       RR+FLD   F ++P +R     ++  +R RN  L  G  D     +  
Sbjct: 113 EHQRLLLDGPRVRRQFLDWGTFHLEPDYRELAQRYQHALRQRNAALRVG--DRRSEQAWT 170

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
             +      +++AR   I AL  +  E+  ++      L L  +     +  +       
Sbjct: 171 PVLIRCAAAVDVARQRFIEALRPIWSEF-ARQWLGLESLELRYYRGAAAELPWE------ 223

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
            + L +  + D  +  T  GPHR+DLI+   D+       S G+QK+++V + +A  +L 
Sbjct: 224 -RVLDEQLERDRTAGFTHRGPHRADLILS-RDRIPAADALSRGQQKLLVVALLIAEVKLW 281

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
           S   G  P+LL+D++ A LD    + +   VT   +Q+F+T  D +   +     ++ ++
Sbjct: 282 SRQ-GLTPVLLIDDLPAELDPAHLHTVLDTVTGDPTQVFLTAIDGAALPTDLPPGQWYQV 340

Query: 368 SNHQA 372
              + 
Sbjct: 341 CEGRV 345


>gi|81301059|ref|YP_401267.1| recombination protein F [Synechococcus elongatus PCC 7942]
 gi|97181064|sp|Q31KY9|RECF_SYNE7 RecName: Full=DNA replication and repair protein recF
 gi|81169940|gb|ABB58280.1| DNA replication and repair protein RecF [Synechococcus elongatus
           PCC 7942]
          Length = 387

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 164/375 (43%), Gaps = 11/375 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRNY    + F A  TI +G+N  GKTN+LEA+   S  R  R +   D+
Sbjct: 1   MFLHSLHLQHFRNYRDQTVQFQAPKTILLGENAQGKTNLLEAVELFSTLRSHRVSRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+ S     A VE   G   +         +  R +Q +  V+R   +L   L    
Sbjct: 61  VQTGAESAL-LTAVVERDSGEQQLQ---IQLQQQGRRRVQRDGEVLRRQLDLLGSLCSVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
                  +  G   +RR +LDR++  + P +      + R++R RN LL      D +  
Sbjct: 117 FSSLDLDLVRGGPQQRRDWLDRLLIQLQPIYAHLQQQYGRVLRQRNALLRRAESLDLALL 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSF 240
           + +  Q+A+LGV I   R   I  L  L   + ++ +    +L +      L        
Sbjct: 177 APLNWQLAQLGVHIMRRRSRAIQRLVPLAAHWHREISGQREQLIVAYQPSVLAPDDTDEA 236

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            A +E    ++   R  +   R +L+GPHR DL +        +   S G+Q+ +++ + 
Sbjct: 237 IAWQERMLAQIEARRAAELGQRTSLVGPHRDDLNLSINGTEARLQ-ASQGQQRTLVLSLK 295

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359
           LA   LI    G  P+LLLD++ A LD  ++  L   + +   Q  +T T  S FD S  
Sbjct: 296 LAELELIEAVLGEPPLLLLDDVLAELDLRRQQQLLEAIAN-RFQTLITTTHLSAFDQSWV 354

Query: 360 ETAKFMRISNHQALC 374
           ETA+ + + +     
Sbjct: 355 ETAQILTVQSGHLQS 369


>gi|226952832|ref|ZP_03823296.1| DNA replication and repair protein RecF [Acinetobacter sp. ATCC
           27244]
 gi|294648700|ref|ZP_06726160.1| DNA replication and repair family protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226836453|gb|EEH68836.1| DNA replication and repair protein RecF [Acinetobacter sp. ATCC
           27244]
 gi|292825375|gb|EFF84118.1| DNA replication and repair family protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 364

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/376 (22%), Positives = 156/376 (41%), Gaps = 25/376 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  LNI   RN  ++ L       IF G NG GKT+ILE+I  L+ GR FR       
Sbjct: 1   MQITRLNIERVRNLKTVALTELQPFNIFYGANGSGKTSILESIHLLATGRSFRTHIPKHY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +         V    G+         +     + ++IN   I    +L K L +  
Sbjct: 61  IQYEADDAIVFAQSVHERMGM--------RKLASGEQLIKINGDTIATQGQLAKRLPLQH 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           L P    I    +  RR+ LD ++F ++P        + R ++ RN LL        +  
Sbjct: 113 LDPQSTDIIDQGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNSLLKTRRNLTLADL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 +++ G  ++  RV ++   +    E + K+  P I++ L        +Q     
Sbjct: 173 EPWNKMLSDYGEILHSQRVGILEQWNLFFKEDL-KQLLPDIEIELEYHAGFHTEQG---- 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG---STGEQKVVLVGIF 300
                + L    + D   R T  GPHR+DL +     A+        S G++K++++ + 
Sbjct: 228 ---LLQDLVQQHQKDLDRRYTEYGPHRADLRLKTKGDAMRSDAAHVLSRGQKKLLIMALK 284

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFD 356
           L+   ++   +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D         
Sbjct: 285 LSQIAMLH-ASNKETVVLLDDLTAELDLAAQQRLMERLSQLGSQVFMTTLDHTSVLKHLH 343

Query: 357 SLNETAKFMRISNHQA 372
            L+ + +   + + Q 
Sbjct: 344 DLSISFQLFHVVHGQV 359


>gi|225020877|ref|ZP_03710069.1| hypothetical protein CORMATOL_00885 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946359|gb|EEG27568.1| hypothetical protein CORMATOL_00885 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 364

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 24/355 (6%)

Query: 25  FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF-FSTFARVEGME 83
            +   T+FVG NG GKTN++EAI +++     R A  A + R G P+   S  A  +  E
Sbjct: 3   LNPGITLFVGRNGHGKTNLVEAIGYVAHLGSHRVAQDAPLVRHGQPNARVSATAVRDDRE 62

Query: 84  GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRF 143
             A + I     +        IN   +    EL   +R     P    +  G   ERRR+
Sbjct: 63  LTAHLLI-----NASGANQASINRTRLNSPRELLGVVRTVLFCPEDLALVRGEPAERRRY 117

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----------DSSWCSSIEAQMAE 192
           LD ++    PR      D+E+++R R  LL                  +     +AQ++ 
Sbjct: 118 LDNIIATRRPRLAGVKADYEKVLRQRTTLLKTSSAALRRGYSGDDGSLATLDVWDAQLSR 177

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFCALKEEYAKK 250
            G ++  AR  ++  L  L+ E             ++    +     +    ++     +
Sbjct: 178 QGAQMIAARRALVAELDPLVHEAYAGIAPESRPAHIAYESTVP-DVGEDPALIEAAMLAE 236

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
           L   R  +    R+L+GPHR DL++   D        S GE   +++ + L   +L+   
Sbjct: 237 LGRMRPKEIDRGRSLVGPHRDDLVITLGDVPAK-GFASHGETWSMVLALRLGEFQLL-RA 294

Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKF 364
            G  P+L+LD++ A LD  +R  L  +  D+  Q+ +T      +   L +  + 
Sbjct: 295 DGTDPVLILDDVFAELDALRRERLVHLTQDVE-QVLITVAVPDDLPPDLGDIHRI 348


>gi|269837339|ref|YP_003319567.1| DNA replication and repair protein RecF [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786602|gb|ACZ38745.1| DNA replication and repair protein RecF [Sphaerobacter thermophilus
           DSM 20745]
          Length = 412

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/382 (22%), Positives = 158/382 (41%), Gaps = 32/382 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + EFR+Y  L +   A      G N  GKT++LEA+  L+  R  R +S  + 
Sbjct: 1   MILTTLQLEEFRSYRRLSVDLPAAGLRIFGQNAGGKTSLLEAVYLLATMRSPRASSERET 60

Query: 65  TRIGS------PSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDE 115
               S      P +    AR+       D+ + L   ++R     + ++++    R +D 
Sbjct: 61  IHWESGVELGLPPYARVAARIRHNRHETDVEVVLTVDEERGGALRKRVKLDGRPRRAIDA 120

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
               L++    P    +  G    RRR+LD  +  ID  + + +  + RL+  RN LL E
Sbjct: 121 -VGALKVVLFTPDDLNLILGSPSVRRRYLDITLSQIDSTYLQALGQYGRLLEQRNSLLKE 179

Query: 176 --------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                           +  +A++   G  +   R+  ++ +  +  E  +       +L 
Sbjct: 180 LGGRRPRDERAIEDQMAYWDAEIVTRGAYLLAQRLRYVHEVDRVAAEEFRALARTEDRLG 239

Query: 228 LTGF-------------LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
           L                ++     +   +       L   R  +     TL+GPHR DL 
Sbjct: 240 LRYSTTVTLPDALRERVVESTLADAQAFVARALESDLHRLRPDELRRGVTLVGPHRDDLH 299

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
                  ++  +GS G+Q++ +V   LA  R +  +TG  P+LLLD++ + LD + +  L
Sbjct: 300 FLLGGHELSA-YGSRGQQRLAVVATKLAELRQVVASTGERPVLLLDDVLSELDPEHQERL 358

Query: 335 FRIVTDIGSQIFMTGTDKSVFD 356
             ++   G QI +T TD+++ D
Sbjct: 359 LAVLGSAGCQILITATDRALLD 380


>gi|298345813|ref|YP_003718500.1| recombination protein F [Mobiluncus curtisii ATCC 43063]
 gi|298235874|gb|ADI67006.1| recombination protein F [Mobiluncus curtisii ATCC 43063]
          Length = 413

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 156/396 (39%), Gaps = 38/396 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FR+Y  + L F A   +FVG NG GKTN+LEA+++L+     R  + A +
Sbjct: 1   MFVSDLALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADIS--------------IKLETRDDRSVRCLQINDVVI 110
                     + A +      A +               +++E    R+ R + IN   +
Sbjct: 61  IFREIGDTVRSPATLRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNV 119

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           R    L  HL      P   ++  G    RR FLDR+   + P     + ++ ++ R R 
Sbjct: 120 RPRS-LLGHLSTVLFAPEDLQLVQGDPATRRTFLDRIAIQLRPTLVGALGEYTKIARQRG 178

Query: 171 RLLT-----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PH 223
             L          D    S  +  +    V++   R  +I+ L+  +     +       
Sbjct: 179 AYLKDVAKRRAPIDEIQLSIWDDALVPAAVEVMRERARVIDQLAQFLPSVYARIAGHPAP 238

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYA----------KKLFDGRKMDSMSRRTLIGPHRSDL 273
           + L+    +    + S    +E YA          + L      ++     L+GPHR +L
Sbjct: 239 VGLTYADSVTKTLELSADEQREMYANPELLSSVFRQALAQCHADEARRGVNLVGPHRDEL 298

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            +      +     S GE     + + LA   L+       P+LLLD++ A LDE +R A
Sbjct: 299 ELHLNGLPVK-GFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAA 357

Query: 334 LFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368
           L   +     Q+F+T  T   + ++L   A F R++
Sbjct: 358 LLWAIDQAD-QVFITSATGTEIPEAL--HAAFYRVT 390


>gi|56751857|ref|YP_172558.1| recombination protein F [Synechococcus elongatus PCC 6301]
 gi|81820589|sp|Q5N0Y2|RECF_SYNP6 RecName: Full=DNA replication and repair protein recF
 gi|56686816|dbj|BAD80038.1| DNA replication and repair protein RecF [Synechococcus elongatus
           PCC 6301]
          Length = 387

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 98/375 (26%), Positives = 164/375 (43%), Gaps = 11/375 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++  FRNY    + F A  TI +G+N  GKTN+LEA+   S  R  R +   D+
Sbjct: 1   MFLHSLHLQHFRNYRDQTVQFQAPKTILLGENAQGKTNLLEAVELFSTLRSHRVSRDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+ S     A VE   G   +         +  R +Q +  V+R   +L   L    
Sbjct: 61  VQTGAESAL-LTAVVERDSGEQQLQ---IQLQQQGRRRVQRDGEVLRRQLDLLGSLCSVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
                  +  G   +RR +LDR++  + P +      + R++R RN LL      D +  
Sbjct: 117 FSSLDLDLVRGGPQQRRVWLDRLLIQLQPIYAHLQQQYGRVLRQRNALLRRAESLDLALL 176

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSF 240
           + +  Q+A+LGV I   R   I  L  L   + ++ +    +L +      L        
Sbjct: 177 APLNWQLAQLGVHIMRRRSRAIQRLVPLAAHWHREISGQREQLIVAYQPSVLAPDDTDEA 236

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            A +E    ++   R  +   R +L+GPHR DL +        +   S G+Q+ +++ + 
Sbjct: 237 IAWQERMLAQIEARRAAELGQRTSLVGPHRDDLNLSINGTEARLQ-ASQGQQRTLVLSLK 295

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359
           LA   LI    G  P+LLLD++ A LD  ++  L   + +   Q  +T T  S FD S  
Sbjct: 296 LAELELIEAVLGEPPLLLLDDVLAELDLRRQQQLLEAIAN-RFQTLITTTHLSAFDQSWV 354

Query: 360 ETAKFMRISNHQALC 374
           ETA+ + + +     
Sbjct: 355 ETAQILTVQSGHLQS 369


>gi|299768253|ref|YP_003730279.1| recombination protein F [Acinetobacter sp. DR1]
 gi|298698341|gb|ADI88906.1| recombination protein F [Acinetobacter sp. DR1]
          Length = 360

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 155/373 (41%), Gaps = 23/373 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI   RN  ++ L       IF G NG GKT+ILEAI  L+ GR FR     + 
Sbjct: 1   MHLTRLNIERVRNLKTVALQGLQPFNIFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +                  I ++   +     + +++N   +    +L K L +  
Sbjct: 61  IQYAAEDAIVFA-----QSSTEKIGMQ---KLASGEQLMKVNGDTVATQGQLAKLLPLQH 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           L P    I    +  RR+ LD ++F ++P        + R ++ RN LL        +  
Sbjct: 113 LDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 +++ G  ++  R+ ++   +      + +   P +++ L        +Q     
Sbjct: 173 EPWNKMLSDYGEILHSQRLGIVEQWNVFFQNDLSQL-LPDLEIELEYSPGFHTEQG---- 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L +  + D   R T  GPHR+DL +        +   S G++K++++ + L+ 
Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPFGHADVVL-SRGQKKLLIIALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359
             ++   +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D    K     L+
Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342

Query: 360 ETAKFMRISNHQA 372
            + +   + + Q 
Sbjct: 343 ISYQLFNVESGQV 355


>gi|119025021|ref|YP_908866.1| recombination protein RecF [Bifidobacterium adolescentis ATCC
           15703]
 gi|254790464|sp|A0ZZA1|RECF_BIFAA RecName: Full=DNA replication and repair protein recF
 gi|118764605|dbj|BAF38784.1| recombination protein RecF [Bifidobacterium adolescentis ATCC
           15703]
          Length = 403

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 134/356 (37%), Gaps = 18/356 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R++    L F+    I  G NG+GKTNI+EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWDHCVLDFEPGINILQGSNGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G PS  +  A VE         I +  R     R   ++    + + ++   +    
Sbjct: 61  VEKGHPSA-TVRANVEDAGEQRTYEITIAARGANRAR---VDGGKSQYMRDIVGWVPSVS 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P   R+ SG    RR FL++    + PR+ + +  F  + + R  LL +       D 
Sbjct: 117 FTPEDQRLVSGDPATRRNFLNQAASLLLPRYAQSLQQFTHVAKQRAALLKQLSDGSGIDP 176

Query: 181 SW--------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
            +              Q   LGV++   R ++I  L                +  L    
Sbjct: 177 EYGRQAVLSGLEVWTGQFIALGVQLTKDRNDVIGLLREPFTRIYASLAGEEEQADLVYEP 236

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                  F     E ++        +    + LIGP R DL +   D        S GE 
Sbjct: 237 SFDEVLLFDEPAAEISRHFQRIYPGEVARGQNLIGPQRDDLTLRLNDMP-AREFASNGEM 295

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
             + + + +A   ++S      PI++LD++ A LDE +R  +         Q+ +T
Sbjct: 296 WTMALALKMALYEVVSAQRDVKPIVILDDVFAQLDESRRGQILDFARR-QDQVLIT 350


>gi|170078873|ref|YP_001735511.1| recombination protein F [Synechococcus sp. PCC 7002]
 gi|226737845|sp|B1XJ90|RECF_SYNP2 RecName: Full=DNA replication and repair protein recF
 gi|169886542|gb|ACB00256.1| DNA repair and genetic recombination protein [Synechococcus sp. PCC
           7002]
          Length = 388

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/379 (21%), Positives = 170/379 (44%), Gaps = 19/379 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY    + F AQ TI +G+N  GK+N+LEA+  L+  +  R +  AD+
Sbjct: 1   MYLQTLHLRNFRNYQHQHVDFSAQKTILIGNNAQGKSNLLEAVELLASLKTHRTSRDADL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +     A+++   G  D  + L  +     R L++N  ++R   +    L    
Sbjct: 61  VKQGEATA-RIQAQIQRGYGTVDFDLLLRNQGG---RTLKLNGEILRRQLDGLGTLNAVE 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179
                  +  G    RR+++D ++  ++P + R + +++++++ RN LL           
Sbjct: 117 FSCLDLDLVRGGPDCRRQWIDNLLIQLEPVYARILQEYQQVLKQRNALLRTAKKLHRNQA 176

Query: 180 ------SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
                 +   +  + Q+A  G ++   R   +  L  L   + +  +     L +T   +
Sbjct: 177 AIPTDLTQQLTLWDLQLAATGSRVTRRRSRGLLRLMPLAQAWHRDISSQTETLEITYCPN 236

Query: 234 GKFDQS-FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
             + Q     +++    K+   R+ +     +++GPHR ++            +GS G+Q
Sbjct: 237 IPWQQDDPHHVQQACLDKIEQRRQAEQHQGSSMVGPHRDEIEFSINGTPARF-YGSQGQQ 295

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + +++ + LA  +LI    G  P+LLLD++ A LD  ++N L   +     Q  +T T  
Sbjct: 296 RTLVLALKLAELQLIETIIGEPPLLLLDDVLAELDPSRQNQLLDTI-QTRFQTLITTTHL 354

Query: 353 SVF-DSLNETAKFMRISNH 370
           + F     + ++ + ++  
Sbjct: 355 NSFGADWLKHSQILTVNQG 373


>gi|119509397|ref|ZP_01628546.1| DNA repair and genetic recombination protein [Nodularia spumigena
           CCY9414]
 gi|119466011|gb|EAW46899.1| DNA repair and genetic recombination protein [Nodularia spumigena
           CCY9414]
          Length = 376

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/382 (23%), Positives = 166/382 (43%), Gaps = 18/382 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L++ +FRNY   ++ F A  TI VG+N  GK+N+LEA+  L+  R  R    AD 
Sbjct: 1   MYLKNLHLRQFRNYQDQKVEFTAAKTILVGNNAQGKSNLLEAVELLATLRSHRMGRVADF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G        A +E   G +D+++ L     RSV    IN   +R   +    L    
Sbjct: 61  IQEGQD-IAQINAILERENGTSDLALTLRRNGRRSV---AINGESVRRQMDFLGVLNAVQ 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
                  +  G    RR +LD ++  ++P +   +  + +++R RN  L +         
Sbjct: 117 FSSLDLDLVRGGPDVRRNWLDTLLIQLEPIYAHLLQQYNQVLRQRNAFLKKALDSADGIN 176

Query: 177 --YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                 S  +  +AQ+   G K+   R   I  L+ +   +    +     L +      
Sbjct: 177 RVSTQDSTLAIWDAQLVTTGTKVIRRRDRAIQRLAPIAAAWHSSISGSTEVLQINYLPSV 236

Query: 235 KFDQ-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
              Q     +++ +  K+      +     TL+GPHR ++ +   ++     +GS G+Q+
Sbjct: 237 PLAQIPPEEIQQAFLGKIQQRSAAELYRGTTLVGPHRDEVEL-IINQTPARQYGSQGQQR 295

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
            +++ + LA   LI       P+LLLD++ A LD  ++N L   + D   Q  +T T  S
Sbjct: 296 TLVLALKLAELELIEQVVQEPPLLLLDDVLAELDPFRQNQLLDAIQD-RFQTLITTTHLS 354

Query: 354 VFDS-LNETAKFMRISNHQALC 374
            FD+    +++ + + + + + 
Sbjct: 355 SFDAQWLNSSQILYVKSGEIVS 376


>gi|320095110|ref|ZP_08026819.1| recombination protein F [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977977|gb|EFW09611.1| recombination protein F [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 395

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 153/395 (38%), Gaps = 32/395 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FR++    + F    T+ VG NG GKTN++EAI++LS     R  + + +
Sbjct: 1   MRVSHLALDDFRSWKRGLVEFPPGATVLVGANGQGKTNLVEAIAYLSTFSSHRVGAESAL 60

Query: 65  TRIGSP------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            RI +              R+   EG   + ++LE    ++ R  +IN   +R    L  
Sbjct: 61  VRIPADPASTAPGGAVIRVRLVQAEGREQV-VELEIVRGKANRA-RINRTQVRPRAIL-G 117

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY- 177
            +R     P    +  G    RR F+D +V    P       DFER+ R R  L+     
Sbjct: 118 LVRTVVFAPEDLALVRGEPAARRAFMDDLVIQRSPVMAGVKADFERVARQRAALMKSAQA 177

Query: 178 -------FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSL 228
                   D S     + Q A L  +++ AR + + +L+        + +     + LS 
Sbjct: 178 SARRGASPDLSTLDVWDQQFAHLSARLSAARAQAVTSLAGPASRAYDEVSDSPRRLVLSF 237

Query: 229 TGFLDGKFDQSFC-----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
              +D                   A +      L   R  +      L+G HR +L +  
Sbjct: 238 EASVDRAIGTDPDDPASADPCDAPAQERRTLAALAAHRDKEVTRGVNLVGAHRDELSLVL 297

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
               +   + S GE   V + + L    L+S   G  P+L+LD++ A LD  +R  L  +
Sbjct: 298 GGMPVK-GYASHGESWSVALALRLGAFELLSE-DGDTPVLILDDVFAELDTARREGLAAM 355

Query: 338 VTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
            +     I     ++ +   L+     +R+   + 
Sbjct: 356 ASRAEQAIITCAVEEDIPAGLDHRTIRIRMDAAEG 390


>gi|126668220|ref|ZP_01739181.1| recombination protein F [Marinobacter sp. ELB17]
 gi|126627369|gb|EAZ98005.1| recombination protein F [Marinobacter sp. ELB17]
          Length = 411

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 156/416 (37%), Gaps = 57/416 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
           + +  L    FRN A+  + F     +  G NG GKT++LEAI +L  GR FR + +   
Sbjct: 1   MALITLQTEHFRNLAAKPVTFSPAFNLIDGANGSGKTSLLEAIGYLGLGRSFRVSRHQAV 60

Query: 64  ------------------VTRIGSPSFF-----------------------STFARVEGM 82
                             +   GS S                            A  E  
Sbjct: 61  VQHQQQRFTVFGGLDAGTLNCRGSNSGAFNSGVPNPDTGNSDARNSCIPNSELKAAPEAG 120

Query: 83  EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142
                  + +          L+++   +R +  L +HL +  + P +  I +G   +RR+
Sbjct: 121 ASSYAHRLGISRDVGLKETVLRVDGEAVRNLSALARHLPVLVIDPGVFDIVAGGPGKRRQ 180

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
           FLD  VF ++P         +R++  RN+ L  G  D S   + +AQ   L  ++  AR+
Sbjct: 181 FLDWSVFHVEPSFGGAWQQCQRVISQRNQTLRNGRIDESLMRAWDAQYDLLSNRVTDARL 240

Query: 203 EMINALSSLIMEYVQKENFPHI-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                        + + +     +L L  +      Q         ++ L   R  +   
Sbjct: 241 AAFALFKEAFWLLLGETDAAWANQLKLEFYPGWDHAQ-------RLSEVLVSHRDQERRM 293

Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
             TL GP+R+D+ +    + +     S G+QK +++ + +A   ++    G     LLD+
Sbjct: 294 GHTLYGPNRADIRLKIQGRPVAEIL-SRGQQKTLVILMKIAQG-MVLRPLGKQVTFLLDD 351

Query: 322 ISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-----NETAKFMRISNHQA 372
           I+A LD   R  L   +  +  Q+F+T  ++   D+L         +   + + Q 
Sbjct: 352 INAELDSRHRQMLAEKLRLLQCQVFITSIEQQTPDTLWPGTTTPDFRMFHVEHGQV 407


>gi|304390483|ref|ZP_07372436.1| recombination protein F [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
 gi|304326239|gb|EFL93484.1| recombination protein F [Mobiluncus curtisii subsp. curtisii ATCC
           35241]
          Length = 413

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 156/396 (39%), Gaps = 38/396 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FR+Y  + L F A   +FVG NG GKTN+LEA+++L+     R  + A +
Sbjct: 1   MFVSDLALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADIS--------------IKLETRDDRSVRCLQINDVVI 110
                     + A +      A +               +++E    R+ R + IN   +
Sbjct: 61  IFREIGDTVRSPATLRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNV 119

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           R    L  HL      P   ++  G    RR FLDR+   + P     + ++ ++ R R 
Sbjct: 120 RPRS-LLGHLSTVLFAPEDLQLVQGDPATRRTFLDRIAIQLRPTLVGALGEYTKIARQRG 178

Query: 171 RLLT-----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PH 223
             L          D    S  +  +    V++   R  +I+ L+  +     +       
Sbjct: 179 AYLKDVAKRRAPIDEIQLSIWDDALVPAAVEVMRERARVIDQLAQFLPSVYARIAGHPAP 238

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYA----------KKLFDGRKMDSMSRRTLIGPHRSDL 273
           + L+    +    + S    +E YA          + L      ++     L+GPHR +L
Sbjct: 239 VGLTYADSVTKTLELSADEQREMYANPELLSSVFRQALAQRHADEARRGVNLVGPHRDEL 298

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            +      +     S GE     + + LA   L+       P+LLLD++ A LDE +R A
Sbjct: 299 ELHLNGLPVK-GFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAA 357

Query: 334 LFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368
           L   +     Q+F+T  T   + ++L   A F R++
Sbjct: 358 LLWAIDQAD-QVFITSATGTEIPEAL--HAAFYRVT 390


>gi|257789782|ref|YP_003180388.1| DNA replication and repair protein RecF [Eggerthella lenta DSM
           2243]
 gi|317489245|ref|ZP_07947762.1| DNA replication and repair protein RecF [Eggerthella sp. 1_3_56FAA]
 gi|325832293|ref|ZP_08165292.1| DNA replication and repair protein RecF [Eggerthella sp. HGA1]
 gi|257473679|gb|ACV53999.1| DNA replication and repair protein RecF [Eggerthella lenta DSM
           2243]
 gi|316911646|gb|EFV33238.1| DNA replication and repair protein RecF [Eggerthella sp. 1_3_56FAA]
 gi|325486129|gb|EGC88583.1| DNA replication and repair protein RecF [Eggerthella sp. HGA1]
          Length = 420

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/375 (23%), Positives = 154/375 (41%), Gaps = 19/375 (5%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
            + I  ++   FR+Y +  L      T+ VG N  GKTN++E I  L+    FR A    
Sbjct: 2   DLAIAHISFLNFRSYEAFDLDGIGPLTVLVGPNAAGKTNVVEGIGLLTAQSSFRHAPVDQ 61

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R G+P     FAR+          ++L  +     +   +N    R  D L   +   
Sbjct: 62  LVRAGAP-----FARLTADVTDGSRQLELAVQMAEGKKKHLLNGKPKRTAD-LKGLVPSV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    +  G    RR  LD +   +   H     D+E+++R +NRLL +    ++  
Sbjct: 116 TFTPDDLELAKGAMSVRRAALDALGSQLSANHYLIRRDYEKVLRHKNRLLKDEAP-AALV 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-- 241
            ++   +   G +++  R  +   L++ +  Y  +    H +L        +        
Sbjct: 175 GAMNETLVTCGAQLSCYRAALFEKLAASMASYYAEITDGHERLDAGFVPSWEEHDPLSFA 234

Query: 242 -------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                    +E  A  L      + + +R L+GPH   +      K   +  GS G+Q+ 
Sbjct: 235 TRTFGRDEAREALADALARRGGEERVRKRALVGPHADRIEFFIDGKNAAL-FGSQGQQRS 293

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           V++   LA A LI +     P+LLLD++ + LD  +R AL   ++    Q F+T T+ + 
Sbjct: 294 VVLAFKLAEATLIQDILRQKPVLLLDDVMSELDAARRRALVAFISG-DIQTFITTTNLAY 352

Query: 355 F-DSLNETAKFMRIS 368
           F D L   A+ + + 
Sbjct: 353 FDDDLLGGARIVELE 367


>gi|58038494|ref|YP_190458.1| recombination protein F [Gluconobacter oxydans 621H]
 gi|58000908|gb|AAW59802.1| DNA replication and repair protein RecF [Gluconobacter oxydans
           621H]
          Length = 367

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 187/369 (50%), Gaps = 6/369 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  L +++FRNY       +A   +  G+NG GKTN+LEA+S L+PGRG R A+   +
Sbjct: 1   MKLTRLALTDFRNYTHTVWTPEASILVLTGENGSGKTNLLEAVSLLAPGRGLRGAALPAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+   +   A ++       I    +   ++  R  +++   IR    + +     W
Sbjct: 61  CRQGAER-WGVAATLQSGLDEFRIGTGSDLS-EKQRRTFRLDGENIRSQALIGQRFSCVW 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P MDR+F   S  RRRFLDR+V A+ P H R++   +R +  RNR+L+E   ++ W +
Sbjct: 119 LTPQMDRLFQEGSSGRRRFLDRLVMALSPDHGRQIAAHDRSVVTRNRVLSERPNEAEWLT 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSFCAL 243
           SIE  +A   V  + AR+ +I ++++   E    + F    L L   +  +   Q    +
Sbjct: 179 SIEDSIARHAVAASAARLALIESMNAHPFE---NDGFSASTLHLDCAISSRLTTQPALEV 235

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++     L   R  D     T +G HR+D ++            S+G+QKV+L G  L+H
Sbjct: 236 EDWIRNSLRQARTEDRQRSTTSVGAHRADFMLSDTATGRPAELSSSGQQKVMLTGTILSH 295

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           ARL++   G+AP +LLDE   HLDE +R+AL   +  + + + +TGTD   F  +   A+
Sbjct: 296 ARLMTQERGYAPAILLDEPLLHLDEMRRHALLDSLEGLRAPVLITGTDAEAFAPIAGRAQ 355

Query: 364 FMRISNHQA 372
           F  I N   
Sbjct: 356 FFSIRNGTI 364


>gi|315657691|ref|ZP_07910573.1| recombination protein F [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
 gi|315492163|gb|EFU81772.1| recombination protein F [Mobiluncus curtisii subsp. holmesii ATCC
           35242]
          Length = 413

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 158/396 (39%), Gaps = 38/396 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FR+Y  + L F A   +FVG NG GKTN+LEA+++L+     R  + A +
Sbjct: 1   MFVSDLALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADIS--------------IKLETRDDRSVRCLQINDVVI 110
                     + A +      A +               +++E    R+ R + IN   +
Sbjct: 61  IFREIGDTVRSPATLRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNV 119

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           R    L  HL      P   ++  G  + RR FLDR+   + P     + ++ ++ R R 
Sbjct: 120 RPRS-LLGHLSTVLFAPEDLQLVQGDPVTRRTFLDRIAIQLRPTLVGALGEYTKIARQRG 178

Query: 171 RLLT-----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PH 223
             L          D    S  +  +  + V++   R  +I+ L+  +     +       
Sbjct: 179 AYLKDVAKRRAPIDEIQLSIWDDALVPVAVEVMRERARVIDQLAQFLPSVYARIAGHPAP 238

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYA----------KKLFDGRKMDSMSRRTLIGPHRSDL 273
           + L+    +    + S    +E YA          + L      ++     L+GPHR +L
Sbjct: 239 VGLTYADSVTKTLELSADEQREMYANPELLSSVFRQALAQRHADEARRGVNLVGPHRDEL 298

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            +      +     S GE     + + LA   L+       P+LLLD++ A LDE +R A
Sbjct: 299 ELHLNGLPVK-GFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAA 357

Query: 334 LFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368
           L   +     Q+F+T  T   + ++L   A F R++
Sbjct: 358 LLWAIDQAD-QVFITSATGTEIPEAL--HAAFYRVT 390


>gi|296453190|ref|YP_003660333.1| DNA replication and repair protein RecF [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296182621|gb|ADG99502.1| DNA replication and repair protein RecF [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 412

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 141/375 (37%), Gaps = 18/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I  G NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +        +           +  R     R   IN      + ++   +    
Sbjct: 61  IERGQTTATIRANVADDAGQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVS 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P   R+ SG    RR  +++    ++P + + +  F R+ + R  LL +   ++    
Sbjct: 118 FTPEDQRLVSGDPGARRVMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANNGQ 177

Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                 S       Q  E GV +   R  +I  L+               +++LT     
Sbjct: 178 PMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLAEPFAAIYADLAGAGEQVTLTYAPSF 237

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                F     + ++        +      LIGP R D+ ++           S GE   
Sbjct: 238 DEVLMFDDPHPQISEHFQRIYPGEMARGVNLIGPQRDDMNLELAGIP-AREFASNGEMWT 296

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
           + + + +A   ++ +  G  PI++LD++ A LD+ +R  +         Q+ +T   +  
Sbjct: 297 MALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQILDFARK-QDQVLITVAAEGD 355

Query: 354 VFDSLNETAKFMRIS 368
           V D   E+A  + ++
Sbjct: 356 VPDY--ESAHRIDVA 368


>gi|212715153|ref|ZP_03323281.1| hypothetical protein BIFCAT_00039 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661834|gb|EEB22409.1| hypothetical protein BIFCAT_00039 [Bifidobacterium catenulatum DSM
           16992]
          Length = 400

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 140/377 (37%), Gaps = 19/377 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R++    L F+    I  G NG+GKTNI+EA+  LS G   R +S   +
Sbjct: 1   MYISRLALDHYRSWEHCVLDFEPGINILQGANGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  S  +  A VE  E        +  R     R   I+    + + +L        
Sbjct: 61  IEKGCTSA-TIRANVEDDETQHTYEATIVARGANRAR---IDGGKSQYMRDLIGRTPSVS 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG----YFDS 180
             P   R+ +G    RR F+++    + P + + +  F  + + R  LL +       D 
Sbjct: 117 FTPEDQRLVAGDPATRRNFINQAASLLLPHYAQLLQQFTHVAKQRTALLKQLGDGTNLDP 176

Query: 181 SW--------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
            +              Q  +LG+++   R ++I  L                + +L+   
Sbjct: 177 QYSQQTVLSGLEIWTGQFIDLGMRLTRERNDVIARLGEPFARIYASLAGDDERAALSYEP 236

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                  F     E ++        +    + LIGPHR DL +   D        S GE 
Sbjct: 237 SFDEVMLFDDPSAEISRHFQRIYPGEVARGQNLIGPHRDDLTLLLNDMP-AREFASNGEM 295

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTD 351
             + + + +A    +S      PI++LD++ A LDE +R  +         Q+ +T    
Sbjct: 296 WTMALALKMALYEAVSAQFESKPIVILDDVFAQLDESRRGQILDFAMR-QDQVLITVAAA 354

Query: 352 KSVFDSLNETAKFMRIS 368
             +  +    A  + ++
Sbjct: 355 SDIPQTDAVHAHVIDVA 371


>gi|221195223|ref|ZP_03568279.1| DNA replication and repair protein RecF [Atopobium rimae ATCC
           49626]
 gi|221185126|gb|EEE17517.1| DNA replication and repair protein RecF [Atopobium rimae ATCC
           49626]
          Length = 361

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/365 (23%), Positives = 159/365 (43%), Gaps = 11/365 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  +++  FRN+  L + F    TI VG N VGKTN +EA+  L+ G  FR+ +   +  
Sbjct: 5   VNNISLVNFRNFRMLSVDFSQSITILVGHNAVGKTNTIEALQMLTAGYSFRKPTPVQLML 64

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G        A + G   + D+S  + +      R  + N       D +   L      
Sbjct: 65  EGEKQ-SKIHAHLTGDGRVIDLSCTISSLR----RQYEKNGKKCHATD-IPGDLMSVLFT 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P         +  RR  +D      +  + + +  + R +  RNRLL E   D S  S+ 
Sbjct: 119 PDDLACIKRSASYRRGEIDDFGKQANKTYAKVLAAYLRSIEQRNRLLKENVVDFSLLSAW 178

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSLTGFL-DGKFDQSFCALK 244
           +  +A  G  +  AR+++   LS+   E  ++ +    + L     + +   DQ+   L 
Sbjct: 179 DTSVALGGATLLCARLKLFRRLSAKTSEIYKQISGGEDLVLRYESSIGEISADQTKEELL 238

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +++   L D   +D   ++T +GPHR D++     K   + +GS G+Q+ V++ + +A  
Sbjct: 239 DKFLSSLKDAHGVDERRQQTTVGPHRDDIVFLINGKDARM-YGSQGQQRSVILALKMAEV 297

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAK 363
            +     G  P+LLLD++ + LD+ +R A+         Q  +T T+   F   + + AK
Sbjct: 298 LVSEEILGTKPLLLLDDVMSELDKSRREAIMNFTFG-DIQTVITTTNLGYFSPDMVDVAK 356

Query: 364 FMRIS 368
            +   
Sbjct: 357 VVSFE 361


>gi|239622840|ref|ZP_04665871.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|239514837|gb|EEQ54704.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 412

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 141/375 (37%), Gaps = 18/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I  G NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +        +           +  R     R   IN      + ++   +    
Sbjct: 61  IERGQTTATIRANVADDAGQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVS 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P   R+ SG    RR  +++    ++P + + +  F R+ + R  LL +   ++    
Sbjct: 118 FTPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANNGQ 177

Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                 S       Q  E GV +   R  +I  L+               +++LT     
Sbjct: 178 PMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLAEPFAAIYADLAGAGEQVTLTYAPSF 237

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                F     + ++        +      LIGP R D+ ++           S GE   
Sbjct: 238 DEVLMFDDPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLELGGIP-AREFASNGEMWT 296

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
           + + + +A   ++ +  G  PI++LD++ A LD+ +R  +         Q+ +T   +  
Sbjct: 297 MALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQILDFARK-QDQVLITVAAEGD 355

Query: 354 VFDSLNETAKFMRIS 368
           V D   E+A  + ++
Sbjct: 356 VPDY--ESAHRIDVA 368


>gi|118465169|ref|YP_879306.1| recombination protein F [Mycobacterium avium 104]
 gi|166220715|sp|A0Q8R8|RECF_MYCA1 RecName: Full=DNA replication and repair protein recF
 gi|118166456|gb|ABK67353.1| DNA replication and repair protein RecF [Mycobacterium avium 104]
          Length = 385

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 153/376 (40%), Gaps = 22/376 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A   L      T+F+G NG GKTN+LEA+ + S     R  + A +
Sbjct: 1   MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       + ++ LE    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGADRTVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179
             P    +  G   ERRR+LD +     P       D+++++R R  LL          D
Sbjct: 117 FAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGD 176

Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234
                     ++++AE G ++  AR++++N L+  + +  Q          +     L  
Sbjct: 177 RGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGA 236

Query: 235 KFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
                  A   +Y        L   R  +      L+GPHR DL +   ++ +     S 
Sbjct: 237 AAAAEVNAGDRDYLEAALLAGLAARRYAELERGVCLVGPHRDDLELWLGEQ-VAKGFASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE   + + + LA   L+       P+LLLD++ A LD  +R A    V +   Q+ +T 
Sbjct: 296 GESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELDAARRRA-LAAVAESAEQVLVTA 353

Query: 350 TDKSVFDSLNETAKFM 365
                  +  +  +  
Sbjct: 354 AVLEDIPAGWQARRLF 369


>gi|262371171|ref|ZP_06064492.1| recombinational DNA repair ATPase [Acinetobacter johnsonii SH046]
 gi|262313901|gb|EEY94947.1| recombinational DNA repair ATPase [Acinetobacter johnsonii SH046]
          Length = 360

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/376 (20%), Positives = 152/376 (40%), Gaps = 23/376 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  LNI   RN  ++ L       +F G NG GKT+ILEAI  L+ GR FR       
Sbjct: 1   MQITRLNIERVRNLRTVALHGLQPFNVFYGQNGSGKTSILEAIHLLATGRSFRTHIPKHY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +                  I ++     ++    +++N   I    +L K L +  
Sbjct: 61  IQTDTQDAIVFA-----QSSSEKIGMQKLLSGEQ---LIKVNGDNIATQGQLAKILPLQL 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P    I    +  RR+ LD ++F ++P        + R ++ RN LL        +  
Sbjct: 113 IDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYHAWQYYSRALKQRNSLLKTRRNLSLADL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 + + G  ++  RV ++        + ++    P I++ L        +      
Sbjct: 173 EPWNKMLGDYGEMLHSQRVSIVEQWKGFFEQDLKHL-LPDIEVQLEYSPGFHTEVG---- 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                  L    + D   R T  GPH++DL +        +   S G++K++++ + L+ 
Sbjct: 228 ---LLHDLQSHHQKDLERRYTEYGPHKADLRLKTSLGDADVVL-SRGQKKLLIIALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359
             ++        ++LLD+++A LD   +  L   ++ +GSQ+F+T  +    K+    L+
Sbjct: 284 IAMLH-ACNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFITTLEYESVKNHLHDLS 342

Query: 360 ETAKFMRISNHQALCI 375
            + +   + N Q   +
Sbjct: 343 ISYQLFCVENGQVQVV 358


>gi|302336538|ref|YP_003801745.1| DNA replication and repair protein RecF [Olsenella uli DSM 7084]
 gi|301320378|gb|ADK68865.1| DNA replication and repair protein RecF [Olsenella uli DSM 7084]
          Length = 362

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 87/352 (24%), Positives = 155/352 (44%), Gaps = 10/352 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  +RN+    +      T+  G N  GKTN +EA+  L+ G  FR +  A + R
Sbjct: 5   VRSLGLRNWRNFDERNIALADGMTVLHGRNAAGKTNAIEALQMLTAGFSFRHSKPAQLVR 64

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S     AR+EG   + D+S ++    D + R    N    +  D L   L      
Sbjct: 65  EDQ-SCALIAARLEGDGRVVDVSCEI----DPTRRRFMRNGKRCQAQD-LPSTLMSVLFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P         +  RR  LD      +  + + +  + R +  RNRLL +   D +   + 
Sbjct: 119 PDDLSFVKRGAAYRRDELDAFGRQANRSYSKILSAYVRSVEQRNRLLRQECPDLALLEAW 178

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQ-SFCALK 244
           +A +A  G  + ++R+ +   L   +    ++ +    +       L    +  S   + 
Sbjct: 179 DASVALGGSTLLVSRIHLFERLVEYMCPIYREISEGEELGCRYISSLGLPLEDLSRDEIC 238

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             +AK+L + R  +   ++TL+GP R DL     D     + GS G+Q+ +++   +A  
Sbjct: 239 AAFAKRLCELRPQELRRQQTLVGPQRDDLSFTI-DGRDARSFGSQGQQRSIVLAWKMAEV 297

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           +L  + TG  P+LLLD++ + LDE +RNA+ R V   G Q  ++ T+   F 
Sbjct: 298 KLSRDVTGEQPLLLLDDVMSELDETRRNAMTRFVQG-GIQAVVSTTNLGYFP 348


>gi|256826463|ref|YP_003150422.1| recF protein [Cryptobacterium curtum DSM 15641]
 gi|256582606|gb|ACU93740.1| recF protein [Cryptobacterium curtum DSM 15641]
          Length = 378

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/368 (23%), Positives = 154/368 (41%), Gaps = 16/368 (4%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
            +++  L +  FRN+    L      TI  G N  GKT+++EAI  +S  + FR +    
Sbjct: 10  NLRLTNLVLRNFRNHQEFSLKGLQGITILAGPNATGKTSVVEAIQLISALKSFRASQIGR 69

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             R G  +  S  A +E      D+ +++E       R  ++N    R   +L       
Sbjct: 70  AIRWGQTAA-SVIATIESDHRQLDLQLRIE----EGKRSYRLNG-KARRARDLRGLFPAV 123

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
             VP    +  G S  RR  LD +   I         D+ +L+R +N+ L +   D+   
Sbjct: 124 TFVPDDLGLAKGPSSARRGALDDLGAQISKNFAMVQSDYTKLVRQKNQALRDEASDTV-I 182

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFC 241
            SI+  +  +GV+I   R  MI  L      Y ++         +      + +    + 
Sbjct: 183 DSIDEVLTLVGVQILSHRSVMIKRLLPYFQLYYERIAQANETADIQYIPCWNEENQTQWT 242

Query: 242 ALKEE----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
             +EE    +   L   R  + + R++++GPH   ++             S G+Q+ +++
Sbjct: 243 FEREECLAIFTSTLQQARLQERLRRKSVVGPHADKVVFLINGHD-AAHFASQGQQRSLVL 301

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-D 356
              LA A +I  T    PILLLD++ + LD  +R+    ++ +   QIF+T T+   F D
Sbjct: 302 AYKLAEAAVIEETLNQRPILLLDDVMSELDHQRRDQFMSMIEE-DIQIFITTTNLEYFTD 360

Query: 357 SLNETAKF 364
            + E A  
Sbjct: 361 EIKEKALI 368


>gi|262281564|ref|ZP_06059343.1| DNA replication and repair protein recF [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257023|gb|EEY75762.1| DNA replication and repair protein recF [Acinetobacter
           calcoaceticus RUH2202]
          Length = 360

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/373 (21%), Positives = 156/373 (41%), Gaps = 23/373 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  LNI   RN  ++ L       IF G NG GKT+ILEAI  L+ GR FR     + 
Sbjct: 1   MHLTRLNIERVRNLKTVALQGLQPFNIFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +                  I ++   +     + +++N   +    +L K L +  
Sbjct: 61  IQYAAEDAIVFA-----QSSTEKIGMQ---KLASGEQLMKVNGDTVATQGQLAKLLPLQH 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           L P    I    +  RR+ LD ++F ++P        + R ++ RN LL        +  
Sbjct: 113 LDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 +++ G  ++  R+ ++   +      + ++  P +++ L        +Q     
Sbjct: 173 EPWNKMLSDYGEILHSQRLGIVEQWNVFFQNDL-RQLLPDLEIELEYSPGFHTEQG---- 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L +  + D   R T  GPHR+DL +        +   S G++K++++ + L+ 
Sbjct: 228 ---LMQDLLNQHQKDIERRYTEYGPHRADLRLKTPYGHADVVL-SRGQKKLLIIALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359
             ++   +    ++LLD+++A LD   +  L   ++ +GSQ+FMT  D    K     L+
Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLS 342

Query: 360 ETAKFMRISNHQA 372
            + +   + + Q 
Sbjct: 343 ISYQLFNVESGQV 355


>gi|295394844|ref|ZP_06805057.1| recombination protein F [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972177|gb|EFG48039.1| recombination protein F [Brevibacterium mcbrellneri ATCC 49030]
          Length = 372

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 152/372 (40%), Gaps = 22/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FR+Y S  +  +   + FV  NG GKTN++EA++++S  +  R +    +
Sbjct: 1   MWVSQLRLRNFRSYESFDVALEKGVSTFVAPNGWGKTNLVEALAYVSHLKSHRVSQDLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G     +        +    + + +  +   S R   I    +R   EL   L    
Sbjct: 61  VRSGCDEA-TVAVLAHRGDRQLALEVTVRAKGANSAR---IQRQSVR-PRELVGLLPCVV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179
             P    +  G   +RR FLD ++    PR      D +R ++ RN LL E   +     
Sbjct: 116 FAPEDLGLVKGEPAQRRDFLDDLLVTQSPRFVAVRADSDRALKQRNALLKELKNNRDPGL 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIM------EYVQKENFPHIKLSLTGFLD 233
            +  +  +   AE   ++ + R++++  L+  +            E+   +  + T  +D
Sbjct: 176 EATLAIWDEAFAEAASQLVVGRMDLVKRLTQPLQNDFATLAQDANEDRKSVTATYTSRID 235

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
               ++    K    + L   R  +     TL+GP R DL ++         + S GE  
Sbjct: 236 YSDIRNTTDAKNAIIQALESRRVPEIDRGLTLVGPQRDDLELEI-GGVSAKHYASHGESW 294

Query: 294 VVLVGIFLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-G 349
            V + + LA   ++         + +L+LD++ A LDE +RN L  ++     Q+ +T  
Sbjct: 295 SVALALKLAGWHVLQEDNSGPDDSAVLVLDDVFAELDEGRRNRLAGMLEPAQ-QVLITAA 353

Query: 350 TDKSVFDSLNET 361
               V +SL+ T
Sbjct: 354 VPGDVPESLHST 365


>gi|154486349|ref|ZP_02027756.1| hypothetical protein BIFADO_00158 [Bifidobacterium adolescentis
           L2-32]
 gi|154084212|gb|EDN83257.1| hypothetical protein BIFADO_00158 [Bifidobacterium adolescentis
           L2-32]
          Length = 403

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/356 (21%), Positives = 134/356 (37%), Gaps = 18/356 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R++    L F+    I  G NG+GKTNI+EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWDHCVLDFEPGINILQGSNGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G PS  +  A +E         I +  R     R   ++    + + ++   +    
Sbjct: 61  VEKGHPSA-TVRANIEDAGEQRTYEITIAARGANRAR---VDGGKSQYMRDIVGLVPSVS 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P   R+ SG    RR FL++    + PR+ + +  F  + + R  LL +       D 
Sbjct: 117 FTPEDQRLVSGDPATRRNFLNQAASLLLPRYAQSLQQFTHVAKQRAALLKQLSDGSGIDP 176

Query: 181 SW--------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
            +              Q   LGV++   R ++I  L                +  L    
Sbjct: 177 EYGRQAVLSGLEVWTGQFIALGVQLTKDRNDVIGLLREPFTRIYASLAGEEEQADLVYEP 236

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                  F     E ++        +    + LIGP R DL +   D        S GE 
Sbjct: 237 SFDEVLLFDEPAAEISRHFQRIYPGEVARGQNLIGPQRDDLTLRLNDMP-AREFASNGEM 295

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
             + + + +A   ++S      PI++LD++ A LDE +R  +         Q+ +T
Sbjct: 296 WTMALALKMALYEVVSAQRDVKPIVILDDVFAQLDESRRGQILDFARR-QDQVLIT 350


>gi|21675093|ref|NP_663158.1| recombination/replication protein RecF [Chlorobium tepidum TLS]
 gi|81790424|sp|Q8KA81|RECF_CHLTE RecName: Full=DNA replication and repair protein recF
 gi|21648334|gb|AAM73500.1| recombination/replication protein RecF [Chlorobium tepidum TLS]
          Length = 368

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/372 (21%), Positives = 163/372 (43%), Gaps = 18/372 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  ++I+ FRN+  L        T   G NG GKT+ILEAI + +  RGF   +  + 
Sbjct: 1   MRLDSISIANFRNHTLLEFEPGHSITNIYGRNGSGKTSILEAIHYCALTRGFSGNNDREY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G   F    +   G      +SI       +  + + +N+  ++        +    
Sbjct: 61  LKFGEELFTIRSSFTSGQGIATKVSITYSP---KREKRILVNEQELQTFSSHIGTIPCVT 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---S 181
             P    I +G   ERRRF+D  +   D ++   ++ + R+++ RN LL+         S
Sbjct: 118 FTPREMVIINGAPAERRRFIDTAICQYDRKYLSDLLLYRRILQQRNALLSSEQDPRVIDS 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLSLT-GFLDGKFD 237
               +  Q+  +  +I + R   I   +S++    +++ +   P I    + G  +  ++
Sbjct: 178 ALDVLTDQLVAIATEIVLVRKRFIEHFTSMLGGVYQWIPEGAEPSILYQSSLGHHENLYE 237

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    +++ + ++    ++ +   R+TL GPHR DL   Y +K     + S G+Q+  LV
Sbjct: 238 KD--KIQQVFRERFETLKQQELQRRQTLAGPHRDDLQF-YLNKREIRKYASQGQQRAFLV 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + +     +   +G  PI LLD++ + LDE     +   +   G Q+ +T T+K     
Sbjct: 295 AMKMTLQGYLYEASGEIPITLLDDLFSELDEVVSGTMVETLATKG-QVIITSTEKKKGKG 353

Query: 358 LNETAKFMRISN 369
           ++    F  + +
Sbjct: 354 IS----FFSVDD 361


>gi|23335941|ref|ZP_00121172.1| COG1195: Recombinational DNA repair ATPase (RecF pathway)
           [Bifidobacterium longum DJO10A]
 gi|227547509|ref|ZP_03977558.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|312133630|ref|YP_004000969.1| recf [Bifidobacterium longum subsp. longum BBMN68]
 gi|322688194|ref|YP_004207928.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           157F]
 gi|227212024|gb|EEI79920.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|311772888|gb|ADQ02376.1| RecF [Bifidobacterium longum subsp. longum BBMN68]
 gi|320459530|dbj|BAJ70150.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           157F]
          Length = 412

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 140/375 (37%), Gaps = 18/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I  G NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +        +           +  R     R   IN      + ++   +    
Sbjct: 61  IERGQTTATIRANVADDAGQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVS 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179
             P   R+ SG    RR  +++    ++P + + +  F R+ + R  LL +   +     
Sbjct: 118 FTPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANVNNGQ 177

Query: 180 -----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                 S       Q  E GV +   R  +I  L+               +++LT     
Sbjct: 178 PMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLAEPFAAIYADLAGAGEQVTLTYAPSF 237

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                F     + ++        +      LIGP R D+ ++           S GE   
Sbjct: 238 DEVLMFDDPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLELGGIP-AREFASNGEMWT 296

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
           + + + +A   ++ +  G  PI++LD++ A LD+ +R  +         Q+ +T   +  
Sbjct: 297 MALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQILDFARK-QDQVLITVAAEGD 355

Query: 354 VFDSLNETAKFMRIS 368
           V D   E+A  + ++
Sbjct: 356 VPDY--ESAHRIDVA 368


>gi|145630087|ref|ZP_01785869.1| recombination protein F [Haemophilus influenzae R3021]
 gi|144984368|gb|EDJ91791.1| recombination protein F [Haemophilus influenzae R3021]
          Length = 299

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 131/313 (41%), Gaps = 14/313 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +FRN  ++ L FD      +G+NG GKT++LEAI +L  GR F+ A    +
Sbjct: 1   MAISRLLVEKFRNLTAVDLDFDPCFNFLIGNNGSGKTSLLEAIFYLGHGRSFKSAVTNRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F+ F +++  +    + ++   +  +    ++IN      + +L   L +  
Sbjct: 61  ISYDEP-HFTLFGQIQESQHQWSVGLQ---KLRQGNTLVKINGEDGNKISDLAHLLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD  +F           +  RL++ RN  L +    S+   
Sbjct: 117 ITPEGLTLLNGGPSYRRAFLDWGLFHHQTSFYSAWSNLNRLLKQRNAALAQNQPYSA-IK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A+L  +++  R E   ALS  I +  Q    P ++++++     + +       
Sbjct: 176 IWDVELAKLAHQVSEWRAEYAEALSPEIEQTCQ-LFLPELEINVSFHQGWEKN------- 227

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            +Y + L    + D     T  GP ++D         +     S G+ K+++  + LA  
Sbjct: 228 ADYYEILQQNFERDRALNYTFSGPQKADFRFKAQGLPVEDVL-SRGQLKLLMCALRLAQG 286

Query: 305 RLISNTTGFAPIL 317
             +        I 
Sbjct: 287 EHLMKEKQRHCIF 299


>gi|229077279|ref|ZP_04209964.1| DNA replication and repair protein recF [Bacillus cereus Rock4-2]
 gi|228706028|gb|EEL58331.1| DNA replication and repair protein recF [Bacillus cereus Rock4-2]
          Length = 293

 Score =  256 bits (654), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 121/290 (41%), Gaps = 9/290 (3%)

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           +E    +  +  ++N +  + + +    + +    P    +  G    RRRFLD  +  I
Sbjct: 1   MELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQI 60

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINA 207
            P +   +  +++++  RN LL +   +     +       Q+ E G KI   R E ++ 
Sbjct: 61  APVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHL 120

Query: 208 LSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
           L        +  +     +++     +D         +KE Y +     ++ +     TL
Sbjct: 121 LQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKIKEVYYESFQSVKQREIFRGTTL 180

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           IGPHR DL      K + +  GS G+Q+   + + LA   LI +     PILLLD++ + 
Sbjct: 181 IGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLSE 239

Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQALC 374
           LD+ +++ L   +     Q F+T T     +    + AK + ++N    C
Sbjct: 240 LDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDC 288


>gi|291517731|emb|CBK71347.1| DNA replication and repair protein RecF [Bifidobacterium longum
           subsp. longum F8]
          Length = 412

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/375 (19%), Positives = 140/375 (37%), Gaps = 18/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I  G NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +        +           +  R     R   IN      + ++   +    
Sbjct: 61  IERGQTTATIRANVADDAGQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVS 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179
             P   R+ SG    RR  +++    ++P + + +  F R+ + R  LL +   +     
Sbjct: 118 FTPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANVNNGQ 177

Query: 180 -----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                 S       Q  E GV +   R  +I  L+               +++LT     
Sbjct: 178 PMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLAEPFAAIYADLAGAGEQVTLTYAPSF 237

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                F     + ++        +      LIGP R D+ ++           S GE   
Sbjct: 238 DEVLMFDDPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLELAGIP-AREFASNGEMWT 296

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
           + + + +A   ++ +  G  PI++LD++ A LD+ +R  +         Q+ +T   +  
Sbjct: 297 MALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQILDFARK-QDQVLITVAAEGD 355

Query: 354 VFDSLNETAKFMRIS 368
           V D   E+A  + ++
Sbjct: 356 VPDY--ESAHRIDVA 368


>gi|194477068|ref|YP_002049247.1| putative DNA repair and genetic recombination protein RecF
           [Paulinella chromatophora]
 gi|171192075|gb|ACB43037.1| putative DNA repair and genetic recombination protein RecF
           [Paulinella chromatophora]
          Length = 390

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 79/376 (21%), Positives = 173/376 (46%), Gaps = 15/376 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L + +FRNY+   L  +    + +G+NG GK+N+LEA+  L      R  +  D+ 
Sbjct: 21  RLHRLELKQFRNYSYQELQLETPRLLLIGNNGEGKSNLLEAVELLGSLHSNRCKNDHDLI 80

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           R G  S  ST + +   E   +++I+     +   R  + N   +    +L   LR    
Sbjct: 81  RQGHSS--STISAIIDSEDSIELTIQ-----EHGGRQAKRNGKKLERQHDLLNSLRCVGF 133

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSW 182
                ++  G    RR++LD++V  ++P +   + +++RL++ RN+LL +       +  
Sbjct: 134 SSLDLQLVRGEPALRRQWLDKVVIKLEPVYNELLNNYKRLLKQRNQLLRKDISNNNRNEL 193

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSF 240
               + Q++ +  +I+  R   +  L  L + + Q+ +    +L+L       F  ++S 
Sbjct: 194 LDIFDQQLSLISARIHRRRYRALKRLEPLAVYWQQQLSKGREELALVYKSGISFIGEESE 253

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            + + +   +L   R+ +  + R  +GPHR ++ +          +GS G+Q+  ++ + 
Sbjct: 254 DSCRNKLLMQLKKQRQNELYTYRCTVGPHRDEIDIMLNGM-FARYYGSAGQQRTTVLALK 312

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLN 359
           +A   LI+      PIL+LD++ A LD  ++  L + +     Q  ++ T+  +F     
Sbjct: 313 IAELELINQVHKDPPILILDDVMAELDSGRQELLLKTM-GANYQCLISSTNLDIFTPDWR 371

Query: 360 ETAKFMRISNHQALCI 375
           + ++ + + +     +
Sbjct: 372 KNSQVIEVVSGHLKSV 387


>gi|213690932|ref|YP_002321518.1| DNA replication and repair protein RecF [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|254790465|sp|B7GSG2|RECF_BIFLI RecName: Full=DNA replication and repair protein recF
 gi|213522393|gb|ACJ51140.1| DNA replication and repair protein RecF [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320456978|dbj|BAJ67599.1| recombination protein RecF [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 412

 Score =  255 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 142/375 (37%), Gaps = 18/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I  G NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +        +           +  R     R   IN      + ++   +    
Sbjct: 61  IERGQTTATIRANVADDAGQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVS 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P   R+ SG    RR  +++    ++P + + +  F R+ + R  LL +   ++    
Sbjct: 118 FTPEDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANNGQ 177

Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                 S       Q  E GV +   R  +I+ L+               +++LT     
Sbjct: 178 PMDAVLSGLEIWTGQFIEAGVVLTRMRAHVISLLAEPFAAIYADLAGAGEQVTLTYAPSF 237

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                F     + ++        +      LIGP R D+ +D           S GE   
Sbjct: 238 DEVLMFNDPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLDLAGIP-AREFASNGEMWT 296

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
           + + + +A   ++ +  G  PI++LD++ A LD+ +R  +         Q+ +T   +  
Sbjct: 297 MALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRAQILDFARK-QDQVLITVAAEGD 355

Query: 354 VFDSLNETAKFMRIS 368
           V D   E+A  + ++
Sbjct: 356 VPDY--ESAHRIDVA 368


>gi|257124818|ref|YP_003162932.1| DNA replication and repair protein RecF [Leptotrichia buccalis
           C-1013-b]
 gi|257048757|gb|ACV37941.1| DNA replication and repair protein RecF [Leptotrichia buccalis
           C-1013-b]
          Length = 362

 Score =  255 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 75/371 (20%), Positives = 159/371 (42%), Gaps = 13/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++ + FR     +L FD    +  G NG GKT+++EA+ FL+ G+ FR     + 
Sbjct: 1   MYLDQISFNNFRCLVDGKLKFDRYFNLIYGKNGQGKTSLIEAVHFLATGKSFRTKKVKE- 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  + +    F +    +   +I I ++  +D+  +   I+    + +      L I  
Sbjct: 60  IRKYNLNRLIVFGKYRHKDLSENI-IAIDVNEDK--KDFYIDREKNKYI-NYVGLLNIIS 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    +  G    RR F +  +      + + +++FE++++ RN+L+ E         
Sbjct: 116 FIPEDIELIIGNPGIRRNFFNYEISQAKKEYLQSIVNFEKILKVRNKLIKEKKTGEEIYK 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCA 242
               +  E G+ I + R E I  LS L+    +K       +KL    FL     ++   
Sbjct: 176 IYNEKFIEEGLNIVLNRREFIKKLSILLNLNYRKLFDENSELKLKYDCFLGDVEKKTREE 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           LKE++        + +     +L+GP + D + +   K     + S GE+K ++  + ++
Sbjct: 236 LKEKFEILCRRKSEREKFLGYSLLGPQKDDFVFELNGKNAKA-YSSQGEKKSIIFSLKIS 294

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              ++       PI ++D+I+++ DE ++ ++     +   Q F+T T+      L    
Sbjct: 295 EIDILIKEKKEYPIFIMDDIASYFDEVRKKSILSYFVNKKIQCFITSTE-----DLGIEG 349

Query: 363 KFMRISNHQAL 373
           K   +   + +
Sbjct: 350 KKFIVEKGKII 360


>gi|313902782|ref|ZP_07836179.1| DNA replication and repair protein RecF [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466902|gb|EFR62419.1| DNA replication and repair protein RecF [Thermaerobacter
           subterraneus DSM 13965]
          Length = 377

 Score =  255 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 87/358 (24%), Positives = 154/358 (43%), Gaps = 19/358 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + + +FR+Y    L  D+  T+  G NG+GKTN+LEAI F + GR  R     D+
Sbjct: 1   MVIRRVVLRQFRSYEQATLELDSGLTLLAGPNGIGKTNLLEAIHFAATGRSPRTTRDTDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+P  +      + + G   + + L  +  ++   L+++    + + +L   L I +
Sbjct: 61  IRHGAPLAYVRVEWDDPVAGRRVVEMALHRQHGKA---LRLDGRKRQRLADLQGALPIVY 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSS 181
             P    +       RR FLD ++  + P + + + D++R++  RN+LL E   G    S
Sbjct: 118 FAPESLALVKAGPAARRGFLDDLLGQLVPGYTQLLHDYQRVLAQRNQLLREIRAGRAAGS 177

Query: 182 WCSSIEAQMAELGVKINIARVE----MINALSSLIMEYVQKENFPHIKLSLTGF---LDG 234
             +  +  +   G  I   R      +    ++               L L       DG
Sbjct: 178 LLAIWDEPLYRHGQAIRQRRRRLLDELAPLAAAAAGRVAAGGAAGAGVLELDYLAAEPDG 237

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           + +    +  E     L    + +     TL GP R D  + + D     A  S G+Q+ 
Sbjct: 238 RVEGGAVSSPE----GLAAFHREEVARGTTLWGPQRDDFAL-FLDGQDARAFASQGQQRA 292

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + + + LA   LI    G  P+LLLD++ + LD  +R  L   V D+  Q+ +T T+ 
Sbjct: 293 LALALTLAQVELIHRRLGRWPVLLLDDVLSELDGKRRRYLLEAVCDLP-QVILTATEP 349


>gi|304309655|ref|YP_003809253.1| Recombinational DNA repair ATPase [gamma proteobacterium HdN1]
 gi|301795388|emb|CBL43586.1| Recombinational DNA repair ATPase [gamma proteobacterium HdN1]
          Length = 393

 Score =  255 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 151/389 (38%), Gaps = 28/389 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L IS+FRN  ++ +         VG NG GKT++LEA+  L+ G+ FR  +    
Sbjct: 1   MAIVKLEISDFRNLKAVEIAPAQGLNWVVGPNGSGKTSLLEALHLLATGKSFRANNLRSC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ +      +           + +E      VR + ++ + +  +  L   + +  
Sbjct: 61  IRGGAKTCRVVCLKNAAAYPDVIQRLGVERDLSGGVRAV-LDQLEVTKLSGLANQIAVCT 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPR--HRRRMIDFERLMRGRNRLLTE------- 175
           L+P    +  G    RR FL   +F ++    + + + D+   ++ RN LL         
Sbjct: 120 LLPDSINLLIGDPSLRREFLGWSMFHVEHNSDYLQVLRDYRFSLQQRNALLRRLNGSELP 179

Query: 176 ----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                   S      + Q+ +  +K++  R   +         Y    +   + L  + +
Sbjct: 180 LSGNEAIRSKELDGWDRQLGKFALKLDERRSHFMTLFRE---RYFSLISKEQLNLRSSSY 236

Query: 232 LDGKFDQSF---CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
              +                  L + R  D     T  GPHR+D+ + Y  K +   + S
Sbjct: 237 SSNEVHFELLRGWPDGVSLEDALAEARMRDIERGFTGSGPHRADIRISYAGKPVR-DYFS 295

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
            G+ K ++    L  A LI ++ G    + + D+  A LDE+  +++   +  I  Q F+
Sbjct: 296 RGQLKHLISICVLVQADLIRSSRGKDGLVFIFDDAFAELDENHASSVLAALRSISVQTFV 355

Query: 348 TGTDKS----VFDSLNETAKFMRISNHQA 372
           T +D +      D++ +  +   + +   
Sbjct: 356 TTSDAAVANRHVDAIQD--RMFHVEHGDV 382


>gi|50083300|ref|YP_044810.1| recombination protein F [Acinetobacter sp. ADP1]
 gi|81827570|sp|Q6FG19|RECF_ACIAD RecName: Full=DNA replication and repair protein recF
 gi|49529276|emb|CAG66988.1| DNA replication, recombinaison and repair protein [Acinetobacter
           sp. ADP1]
          Length = 358

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 78/373 (20%), Positives = 153/373 (41%), Gaps = 23/373 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  LNI   RN  ++ L       IF G NG GKT+ILEA+  L+ GR FR       
Sbjct: 1   MQITRLNIERVRNLKAVALSGLQPFNIFYGANGSGKTSILEAVHLLATGRSFRTHMPKHY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +         +    G+  +            + +++N   +    +L K L +  
Sbjct: 61  IQQNAQDAIIFAQSLSEKIGMQKLL--------SGEQLIKVNGDTVATQGQLAKLLPLQH 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           L P    I    +  RR+ LD ++F ++P        + R ++ RN LL  +     +  
Sbjct: 113 LDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNMLLKTKRQLSLAEL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 ++E G  ++  R+  +        + + +   P +++ L        +      
Sbjct: 173 EPWNKMLSEYGEMLHSQRLVTVERWKDFFQQDLAQL-LPDLQIELEYSPGFHSEVGLW-- 229

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L +    D   R T  GPHR+DL +            S G++K++++ + L+ 
Sbjct: 230 -----QDLLNYHNKDVERRYTEYGPHRADLRLKTALGDADDVL-SRGQKKLLMMALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK----SVFDSLN 359
             ++   +    ++LLD+++A LD + +  L   ++ +GSQ+F+T  D        D L+
Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDSNAQRRLIERLSQLGSQVFITTLDHQAVTQHLDGLS 342

Query: 360 ETAKFMRISNHQA 372
            + +   + + Q 
Sbjct: 343 ISYQLYNVDHGQV 355


>gi|146295088|ref|YP_001178859.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408664|gb|ABP65668.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 349

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 86/349 (24%), Positives = 143/349 (40%), Gaps = 21/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + +  FRN+      F     + +G N  GKTN+LEAI F   G+ F+ +   ++
Sbjct: 1   MIIKSIYLENFRNHNERFFEFKDGINLILGKNASGKTNLLEAIYFCLCGKSFK-SKDTNL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
               S  F     ++E      D+   +    DR   + + IN+  I  + EL +  +  
Sbjct: 60  ISFDSEYF-----KLEASVLANDVEYGILCYVDRLGQKRIMINEKKINRLSELIEKFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    +       RR+FLD  V  + P   +   D+++ +  RN  L   Y      
Sbjct: 115 YFEPDSTELIKQDPKVRRKFLDMEVAKLYPYMIKTFQDYQKALMSRNAFLK-SYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + ++++LG +I   R E I  LS    E   K       + +             + 
Sbjct: 174 DVYDIELSKLGCQILKKREETIKRLSEATKEIWYKVFEDKSTIDIVFRPSI-----PSSS 228

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +EEY  +L    + D     T  G HR D  V    +     + S G+ K   + I LA 
Sbjct: 229 EEEYYSQLKKQFEKDVQMGFTTKGVHRDDFDVFINGQNAK-EYASEGQIKFACIAISLAS 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           A+L        P+LLLD+I + LD +KR  + ++  D   Q  +T  D+
Sbjct: 288 AKLF-----EKPVLLLDDIFSELDSEKRKNVLKLCKDY--QAIITSADE 329


>gi|209542191|ref|YP_002274420.1| recombination protein F [Gluconacetobacter diazotrophicus PAl 5]
 gi|209529868|gb|ACI49805.1| DNA replication and repair protein RecF [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 373

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 131/367 (35%), Positives = 191/367 (52%), Gaps = 5/367 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L +++FRNY  L    +A  T+  G+NG GKTN+LEA+S L PGRG R A  A++ 
Sbjct: 3   RLDRLALTDFRNYRHLAWRPEAPVTVVTGENGSGKTNLLEALSLLVPGRGLRGARSAEMA 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRISW 124
           R G+ + +   AR  G +G A   I   +   R   R  + +   +R    L  HL   W
Sbjct: 63  RHGT-TIWGVAARFTGPDG-APFDIATGSDPARPERRVFRRDGETLRSRAALADHLSAVW 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L P MDR+F      RRRFLDR+V A++P H R +   ++ M  RNRLL  G  D  W S
Sbjct: 121 LTPQMDRLFQDGLPGRRRFLDRLVLALEPGHARELAAHDQAMGQRNRLLAAGRADPGWLS 180

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFCAL 243
           ++E  MA   V  + AR+ ++  L+      V  + FP  +L +    +    D+   A+
Sbjct: 181 ALEDSMARHAVAASAARLALVTQLNGEAAHTV-PDGFPPARLDILCPIVQQLRDRPALAV 239

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++    +L  GR  D       +G HR+D+ +         A  STG+QK +L+G+ LAH
Sbjct: 240 EDWLRGRLAAGRAADGARGGAGMGAHRADMALSDQASGRPAAQASTGQQKALLLGVVLAH 299

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           A L++ + G AP++LLDE   HLDE +R ALFR V    + + MTGTD   F  L   A 
Sbjct: 300 AALMTRSRGEAPMILLDEPLVHLDEARRAALFRSVGAFDATVLMTGTDADQFAPLRGRAG 359

Query: 364 FMRISNH 370
           F+   N 
Sbjct: 360 FVSPRNG 366


>gi|193211679|ref|YP_001997632.1| DNA replication and repair protein RecF [Chlorobaculum parvum NCIB
           8327]
 gi|259563359|sp|B3QQY5|RECF_CHLP8 RecName: Full=DNA replication and repair protein recF
 gi|193085156|gb|ACF10432.1| DNA replication and repair protein RecF [Chlorobaculum parvum NCIB
           8327]
          Length = 368

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/354 (22%), Positives = 153/354 (43%), Gaps = 12/354 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  ++I+ FRN+  L        T   G NG GKT+ILEAI + +  RGF   +  + 
Sbjct: 1   MRLDSISIANFRNHTLLEFEPGHSVTNIYGRNGSGKTSILEAIHYCALTRGFSGNNDREY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G   F    +   G      +S+       +  + + +N+  ++        +    
Sbjct: 61  LKFGEELFTIRSSFTSGQGIATKVSVAYSP---KREKRILVNEQELQTFSSHIGTIPCVT 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYFDSS 181
             P    I +G   ERRRF+D  +   D ++   ++ + R+++ RN LL+   +  F  S
Sbjct: 118 FTPREMVIINGAPAERRRFIDTAICQYDRKYLSDLLLYRRILQQRNALLSSEQDPRFIDS 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
               +  Q+     +I + R   I   +S++ +  Q       + S+         ++  
Sbjct: 178 ALDVLTDQLVATATEIVLVRKRFIEHFTSMLGDVYQWIP-EGAEPSILYQSSLGHHENLY 236

Query: 242 A---LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +++ + ++    ++ +   R+TL GPHR DL   Y +K     + S G+Q+  LV 
Sbjct: 237 EKDKIQQVFRERFETLKQQELQRRQTLAGPHRDDLQF-YLNKREIRKYASQGQQRAFLVA 295

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + +     +   +G  PI LLD++ + LDE     +   +   G Q+ +T T K
Sbjct: 296 MKMTLQGYLYEASGEIPITLLDDLFSELDEVVSGTMVETLATKG-QVIITSTGK 348


>gi|313680849|ref|YP_004058588.1| DNA replication and repair protein recf [Oceanithermus profundus
           DSM 14977]
 gi|313153564|gb|ADR37415.1| DNA replication and repair protein RecF [Oceanithermus profundus
           DSM 14977]
          Length = 344

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 96/347 (27%), Positives = 153/347 (44%), Gaps = 23/347 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L    FRN  SL LV        VG N  GKTN+LEAI FL+ G   R A  AD 
Sbjct: 1   MILTRLRQQNFRNLTSLELVLPPGPLALVGPNASGKTNLLEAI-FLALGGEVRGA-LADR 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+      FA VE   G+    ++ E R  R  R +++N+     + EL ++    W
Sbjct: 59  VRFGAAEA-RLFAEVETQLGV----VRFEQRFGRGGREIRLNEAPA-SLRELAEYAGAVW 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +  G   ERRR+LD+ +    PR+R  +  +E+ +R RN  L           
Sbjct: 113 IRPEDIALVRGGPEERRRWLDQALMRFSPRYRALLSAYEKTLRQRNAALK---TSPRGLG 169

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               ++A  G ++   R  ++  L+ L     ++ +   + L L             A  
Sbjct: 170 VWNERLAGYGEQVLHWRRRILERLAPLAAAAYRELDAAPLVLELR----------ETAPP 219

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E  A+ L    + +     TL GPHR D+ +        +   S GE + V + + LA  
Sbjct: 220 ERLAEVLEANLQEELERGVTLAGPHRDDVRL-LLGGLDAVKFASRGEARSVALALRLAEH 278

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           RL++   G  P+LL+D+ +A LD  ++ AL    + +  Q  ++GT 
Sbjct: 279 RLLAEHHGEPPLLLVDDFAAELDARRQAALLAYASGLP-QAVLSGTH 324


>gi|317482361|ref|ZP_07941381.1| DNA replication and repair protein RecF [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316916241|gb|EFV37643.1| DNA replication and repair protein RecF [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 412

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/375 (19%), Positives = 141/375 (37%), Gaps = 18/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I  G NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRASSTLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +        +           +  R     R   IN      + ++   +    
Sbjct: 61  IERGQTTATIRANVADDAGQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVS 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
             P   R+ SG    RR  +++    ++P + + +  F R+ + R  LL +   ++    
Sbjct: 118 FTPEDQRLVSGDPGARRVMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANNGQ 177

Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                 S       Q  E GV +   R  +I  L+               +++LT     
Sbjct: 178 PMDAVLSGLEIWTGQFIEAGVALTRMRAHVIGLLAEPFAAIYADLAGAGEQVTLTYAPSF 237

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                F     + ++        +      LIGP R D+ +D           S GE   
Sbjct: 238 DEVLMFDDPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLDLAGIP-AREFASNGEMWT 296

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKS 353
           + + + +A   ++ +  G  PI++LD++ A LD+ +R  +         Q+ +T   +  
Sbjct: 297 MALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRTQILDFARK-QDQVLITVAAEGD 355

Query: 354 VFDSLNETAKFMRIS 368
           V D   E+A  + ++
Sbjct: 356 VPDY--ESAHRIDVA 368


>gi|302380115|ref|ZP_07268588.1| DNA replication and repair protein RecF [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312057|gb|EFK94065.1| DNA replication and repair protein RecF [Finegoldia magna
           ACS-171-V-Col3]
          Length = 355

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/353 (22%), Positives = 157/353 (44%), Gaps = 13/353 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RN+  + L F     + VG N  GKTNILEAI+    G+ F+  + + +
Sbjct: 1   MIVQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G            +G E   DI+IK       + + L +N+  +  + E N++    
Sbjct: 61  IKFGEDEARIVMDVYDDGFEDKIDITIK------SNEKILNVNEAFVNTIKEYNEYFECI 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180
              P   +I       RR+FLD  +  +D  +R  +  + +++  RN+L+    ++S   
Sbjct: 115 VFKPDDLKIIKESKSLRRKFLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNSYFN 174

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               ++  Q+++ G  I   R   +  L  +     +  +  +  L +      ++ +  
Sbjct: 175 EQLKALNIQLSDFGSYIMHKRKSYVERLHLIAKNVCKNLSDENDDLYMENKFSIRYVEDM 234

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              K  Y K L D  + D  +++T +G HR DL V   DK       S  + +  ++ + 
Sbjct: 235 TDQKNTYYKSLRDILEKDLENKQTNLGIHRDDLDVLINDKQAKF-FASQAQVRTAILSMK 293

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           LA   L        PI+LLD++ + LD+ + N + R + D   Q F+T ++++
Sbjct: 294 LAQLDLSRFYNDRMPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSERA 344


>gi|284928773|ref|YP_003421295.1| DNA replication and repair protein RecF [cyanobacterium UCYN-A]
 gi|284809232|gb|ADB94937.1| DNA replication and repair protein RecF [cyanobacterium UCYN-A]
          Length = 380

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 173/385 (44%), Gaps = 21/385 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++  FRNY    +   +Q TI +G+N  GK+N+LEAI  L+  +  R     D+
Sbjct: 1   MYLKNIHLYTFRNYYKQSVNLQSQKTILLGNNAQGKSNLLEAIELLATLKSHRTRRDQDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  S     A VE + G +++SI L +   RS   L +N   +    E   H+    
Sbjct: 61  ILEGEKS-SQITANVERIYGQSELSITLRSSGKRS---LMLNHEKLHRHLEFLGHINAVE 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179
                  +  G    RR +LD ++  ++P +   +  + +++R RN LL           
Sbjct: 117 FSCLDLDLVRGSPEIRRIWLDTLLIQLEPIYAHIINQYHKILRQRNSLLKIIRKQFNDSK 176

Query: 180 --------SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                    S     + Q+AE G ++   R  +I  L  L  ++ +  +     L +   
Sbjct: 177 KSDNFMTTISQLKLWDEQLAEAGTRVTRRRNRVIQRLVPLAQKWHKSISGKAELLDINYL 236

Query: 232 LDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            +   + ++   +++ + +K+     ++     T++GPHR D+  +  +K     +GS G
Sbjct: 237 SNITIENENHQTIQQRFLEKIEQRSIIERNLATTVVGPHRDDVEFNI-NKNQAKFYGSQG 295

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+ +++ I LA  +LI +  G  P+LLLD++ A LD +++  L   +     Q  +T T
Sbjct: 296 QQRTLVLAIKLAELQLIEDVIGEPPLLLLDDVLAELDHNRQKQLLEAIQGKF-QTLITTT 354

Query: 351 DKSVFD-SLNETAKFMRISNHQALC 374
               FD    ++++ +++   +   
Sbjct: 355 HLPTFDTEWLKSSQIIKVERGKIFQ 379


>gi|239916574|ref|YP_002956132.1| DNA replication and repair protein RecF [Micrococcus luteus NCTC
           2665]
 gi|281414962|ref|ZP_06246704.1| DNA replication and repair protein RecF [Micrococcus luteus NCTC
           2665]
 gi|259563665|sp|C5C7X6|RECF_MICLC RecName: Full=DNA replication and repair protein recF
 gi|239837781|gb|ACS29578.1| DNA replication and repair protein RecF [Micrococcus luteus NCTC
           2665]
          Length = 404

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 87/380 (22%), Positives = 153/380 (40%), Gaps = 24/380 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +++FR+Y    L      T+ +G NGVGKTN++EAI +L   +  R +S A +
Sbjct: 1   MYLSHLTVADFRSYRWADLELTPGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G         RV    G   +++K+E    RS R        +R  + L   LR   
Sbjct: 61  VRFGRDRA-RIAGRVH--RGSRTVALKVEILPGRSNRVAINRGASVRAKEGL-GILRTVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
             P    + +G    RRR LD+++  + P       D+ER++R RN LL  G     W  
Sbjct: 117 FAPEDLSLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKSGRGSRRWGP 176

Query: 183 -----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
                 +  +  +   G ++   R+ ++  L+  + E            +          
Sbjct: 177 EEDATLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLA 236

Query: 238 QS-------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           +           L  +  + L   R+ +     TL+GPHR +L +     A    + S G
Sbjct: 237 RGTHAEVPAVADLATDMRRTLEAQREEERARALTLVGPHRDELALFLGP-APARGYASHG 295

Query: 291 EQKVVLVGIFLAHARLISNTTGFA---PILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           E   + + + +A   ++          P+L+LD++ A LD  +R  L  +V     Q+ +
Sbjct: 296 ETWSLALALRMAAYDVLVADDPDPDARPVLILDDVFAELDAARRRRLAALV-HRAEQVIV 354

Query: 348 TGTD-KSVFDSLNETAKFMR 366
           T    + V + L      +R
Sbjct: 355 TAAALEDVPEELTAHRVLIR 374


>gi|190571298|ref|YP_001975656.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|213018695|ref|ZP_03334503.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
 gi|190357570|emb|CAQ55009.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
 gi|212995646|gb|EEB56286.1| recF protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB]
          Length = 359

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 104/368 (28%), Positives = 167/368 (45%), Gaps = 11/368 (2%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           MT    IK L +  FR++++  L  D +  +  G NG+GKTNILEAIS L+   G ++A 
Sbjct: 1   MTTHCYIKKLKLYNFRSHSNFELDLDDRPVVVTGKNGIGKTNILEAISLLAKSNGMKKAK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             ++    S   +  +        L  I I          + +QI+         L +  
Sbjct: 61  INEMQNRRSNESWVVYYDFFNGAELNSIGIGKNLN----KKLIQIDGKTQSSYSSLYRIS 116

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            + WL+P MD I      +R +FLDR+V   +  +    + + +    R++LL E   D 
Sbjct: 117 NVIWLIPQMDYILLNSPSDRLKFLDRIVSLFEENYTYCYMKYRKAKHERSKLLRENILDE 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW SS+E  MA   + I   R  ++  L   I +    E FP   L  +  L      + 
Sbjct: 177 SWLSSLENVMATNAIDILRMRSSVLKILQDTI-DNHSCEFFPKASLKFSSQL------TL 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E +  +L + R+ DS++ R     H  +  V      + I   STGEQK++L+ I 
Sbjct: 230 NDTAEYFQNRLKENREKDSLTGRVTFSVHNDNFWVFCQKGDMPINLCSTGEQKLLLLSII 289

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+  +        AP+LLLD+I +HLD+D R  L   V  I  Q ++T  ++  F++   
Sbjct: 290 LSSVKARCIHYNKAPLLLLDDIMSHLDKDYRKVLMEEVLSIQCQTWITDVNQDNFNNYLC 349

Query: 361 TAKFMRIS 368
           + KF  +S
Sbjct: 350 SFKFFELS 357


>gi|169823701|ref|YP_001691312.1| DNA replication and repair protein [Finegoldia magna ATCC 29328]
 gi|303234454|ref|ZP_07321092.1| DNA replication and repair protein RecF [Finegoldia magna BVS033A4]
 gi|167830506|dbj|BAG07422.1| DNA replication and repair protein [Finegoldia magna ATCC 29328]
 gi|302494409|gb|EFL54177.1| DNA replication and repair protein RecF [Finegoldia magna BVS033A4]
          Length = 355

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/353 (22%), Positives = 157/353 (44%), Gaps = 13/353 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RN+  + L F     + VG N  GKTNILEAI+    G+ F+  + + +
Sbjct: 1   MIVQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G            +G E   DI+IK       + + L +N+  +  + E N++    
Sbjct: 61  IKFGEDEARIVMDVYDDGFEDKIDITIK------SNEKILNVNEAFVNTIKEYNEYFECI 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180
              P   +I       RR+FLD  +  +D  +R  +  + +++  RN+L+    ++S   
Sbjct: 115 VFKPDDLKIIKESKSLRRKFLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNSYFN 174

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               ++  Q+++ G  I   R   +  L  +     +  +  +  L +      ++ +  
Sbjct: 175 EQLKALNIQLSDFGSYIMHKRKSYVERLHLIAKNVCKNLSDENDDLYMENKFSIRYVEDM 234

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              K  Y K L D  + D  +++T +G HR DL +   DK       S  + +  ++ + 
Sbjct: 235 TDQKNTYYKSLRDILEKDLENKQTNLGIHRDDLDILINDKQAKF-FASQAQVRTAILSMK 293

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           LA   L        PI+LLD++ + LD+ + N + R + D   Q F+T ++++
Sbjct: 294 LAQLDLSRFYNDRMPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSERA 344


>gi|117923321|ref|YP_863938.1| DNA replication and repair protein RecF [Magnetococcus sp. MC-1]
 gi|259563664|sp|A0L3I9|RECF_MAGSM RecName: Full=DNA replication and repair protein recF
 gi|117607077|gb|ABK42532.1| DNA replication and repair protein RecF [Magnetococcus sp. MC-1]
          Length = 382

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 162/375 (43%), Gaps = 15/375 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FRN     L F     +  G NG GK+N+LEAI  L+ GR FRRA  A +
Sbjct: 1   MQLDRLTLRDFRNITEAELRFGPGLNLITGPNGHGKSNLLEAIGLLATGRSFRRAPAAAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G P F      + G     D+  +LE       + ++IN         L + L    
Sbjct: 61  RRYGQPWF-----HLRGETTARDLGHRLEFFGQAGRQAVKINGKSASAASALGQALAAVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDP-----RHRRRMIDFERLMRGRNRLLTEGYFD 179
           + P   R+       RR F+D + F          H     D+++ ++ RNRLL     +
Sbjct: 116 VTPDTLRLVQDGPGVRRGFVDWVAFTCGRQQGALSHAVVAGDYQKALKARNRLLKLPRVE 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSLTGFLD---GK 235
           +    + E+Q+A LG K+   R +++  L   +   ++       + ++L+  LD     
Sbjct: 176 AGEWLAWESQLATLGAKMARNRYQVLQRLQPHLDRMLEDLGMAQRLTITLSCQLDRHGTH 235

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           + +   A    Y + L + R  +  S  T IGPHR DL++     A+    GS G+QK  
Sbjct: 236 WAEDESAAASLYRRLLAENRASERRSGGTAIGPHRDDLVLRLDGHAL-AQFGSQGQQKRA 294

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            + + LA A+L+    G  P+ +LD+ +A LD D  + L  ++   G QIF+        
Sbjct: 295 ALALKLAEAQLLQEQLGEWPLFVLDDPAAELDTDGMSRLMGLLARCGGQIFVASCRAQTI 354

Query: 356 DSLNETAKFMRISNH 370
                  +   +   
Sbjct: 355 PWSGLAPQRFYVDQG 369


>gi|256545953|ref|ZP_05473308.1| DNA replication and repair protein RecF [Anaerococcus vaginalis
           ATCC 51170]
 gi|256398375|gb|EEU11997.1| DNA replication and repair protein RecF [Anaerococcus vaginalis
           ATCC 51170]
          Length = 357

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 162/370 (43%), Gaps = 16/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +++FRNY S  + F+    IF+GDN  GKTN+LE+I +L+  + F+     D+
Sbjct: 1   MWIQNLKLNKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         ++G+         +    + + + + +N++      +L    ++  
Sbjct: 61  IMFNEKEM-----SLDGIIRKNQSFKNVHISVNENKKDIFVNEIKYDKNKDLKSLFKLVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSW 182
             P    I       RR  +D ++ +++  ++    DF++++  RN+LL         + 
Sbjct: 116 FTPEDLNIIKDGPNFRRDLIDDIIISVNFSYKAVKKDFDKILSQRNKLLKNQRSKYFKTE 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             + + Q+  L  KI   R + I+ +++   +           L++    + +       
Sbjct: 176 LMAFDQQIIRLNYKIYRFREKYISLINTYANKNHLNLTENKENLTIIYKPNIR-----AK 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             EEY +K       D    RT  G  R ++ +    K  T   GS G+Q+  ++ I LA
Sbjct: 231 SMEEYGEKFSKNISDDLKYFRTTSGSQRDEIDIIINGKD-TKKFGSQGQQRSAILNIKLA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +  LI NT+    I+L D++ + LDE + N L   + +   Q  +T T+    D ++ ++
Sbjct: 290 NVNLIENTSQDKAIILFDDVFSELDEKRSNFLLENLGEF--QTIITATNTKSLDGVS-SS 346

Query: 363 KFMRISNHQA 372
           K  +I + + 
Sbjct: 347 KIRKIKDGRI 356


>gi|162456448|ref|YP_001618815.1| RecF protein [Sorangium cellulosum 'So ce 56']
 gi|161167030|emb|CAN98335.1| RecF protein [Sorangium cellulosum 'So ce 56']
          Length = 383

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/373 (22%), Positives = 158/373 (42%), Gaps = 14/373 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I EFRN   + +    +  +  G+NG GKT++LEAI F +  R FR    A++ R
Sbjct: 17  LERLHIREFRNLGRVDVEPAPRINVIAGNNGQGKTSLLEAIYFAATSRSFRTHRLAELVR 76

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+P   +    VE  + L  ++ +     +     ++I+      +        +    
Sbjct: 77  HGAPIASARARFVERRDALQPLAREQTAAVEHKRCVVRIDGNRPPSLASFATRSPVVAFH 136

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW---- 182
                + +G +  RR  LDR+   +DP+       + + +R R+ LL  G    +     
Sbjct: 137 AEELALSTGPASARRTLLDRLALFMDPQSADHRARYAQALRARHELLHRGGGAQAQASAE 196

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             + EA  A  G  +  AR   + AL+  +     +   P + L+      G  D     
Sbjct: 197 LDAFEALCALHGAALTRAREAAVQALAPELTHAFARIAAPDLTLAARYAPGGGGD----- 251

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E+  + L + R+ D+       GPHR DL+++       +   S G+ + + + +  A
Sbjct: 252 -AEQAREALREQRRRDAHRPSAGYGPHRDDLLLELDGHPARVV-ASQGQHRALTLALKAA 309

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
               I++  G  PILLLD++S+ LD D+  ALF  +     Q+F+T T + +  +    +
Sbjct: 310 ETAAIASVRGVEPILLLDDVSSELDPDRTAALFMFLGMARGQVFLTTTRRDLIVTPGVPS 369

Query: 363 ---KFMRISNHQA 372
              +   +     
Sbjct: 370 SERRDFHVEGGAV 382


>gi|255320700|ref|ZP_05361877.1| DNA replication, recombination and repair protein [Acinetobacter
           radioresistens SK82]
 gi|262380669|ref|ZP_06073822.1| recombinational DNA repair ATPase [Acinetobacter radioresistens
           SH164]
 gi|255302316|gb|EET81556.1| DNA replication, recombination and repair protein [Acinetobacter
           radioresistens SK82]
 gi|262297617|gb|EEY85533.1| recombinational DNA repair ATPase [Acinetobacter radioresistens
           SH164]
          Length = 360

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 155/376 (41%), Gaps = 23/376 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  LNI   RN +++ L       +F G NG GKT+ILEAI  L+ GR FR       
Sbjct: 1   MYITRLNIERVRNLSAVALSELQPFNVFYGANGSGKTSILEAIHLLATGRSFRTYIPKHY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+                  I ++     ++    +++N   +    +L K L + +
Sbjct: 61  IQSGASDTIVFA-----QSATEKIGMQKMLSGEQ---IIKVNGDTVATQGQLAKMLALQY 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
           + P    I    +  RR+ LD ++F ++P   +    + R ++ RN LL           
Sbjct: 113 IDPLSTDIIDHGAKPRRQLLDWLMFHVEPEFYQTWQYYSRALKQRNSLLKSRQTLSVDEL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 +A  G  ++  R +++        + + +   P +++ L        +Q     
Sbjct: 173 DPWNKMLASYGELLHAQRSQVMEQWKIYFKQDLSQL-LPDLEIELDYVSGFHSEQG---- 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                + L    + D   R T  GPHR+DL +            S G++K++++ + L+ 
Sbjct: 228 ---LYQDLTLYHQKDLDRRYTEYGPHRADLRLK-TPLGDADNILSRGQKKLLIMALKLSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD----KSVFDSLN 359
             ++   +    ++LLD+++A LD   +  L   ++ +GSQ+F+T  +    +     L+
Sbjct: 284 IAMLH-ASNKETVVLLDDLTAELDLTAQQRLIERLSQLGSQVFITTLEHKSVQQHLHDLS 342

Query: 360 ETAKFMRISNHQALCI 375
            + +   + + Q   +
Sbjct: 343 ISYQLFHVEHGQVSVV 358


>gi|114319169|ref|YP_740852.1| DNA replication and repair protein RecF [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114225563|gb|ABI55362.1| DNA replication and repair protein RecF [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 354

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/364 (23%), Positives = 149/364 (40%), Gaps = 20/364 (5%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            L     RN     L   A   + VG N  GKT++LEAI F++  R FR    A +   G
Sbjct: 2   SLAAEGVRNLQPFELTPGAGINVVVGANAAGKTSLLEAIYFVARTRSFRATRTAQMIGNG 61

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
             + +                  +    D     ++++    R + EL ++L +  +   
Sbjct: 62  HEALWV---------RAQTQGHTIGVARDSQETQVRLDGRDGRSLSELARYLPVQVINSE 112

Query: 129 MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
             R+       RR FL+  VF ++P+       + R +R RN  L  G    +W  + + 
Sbjct: 113 HQRLLLDGPAVRRSFLNWAVFHVEPQFSTVWGRYVRALRQRNAALKAGESRLAW--AYDE 170

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
            + E    I+  R  +I+AL       V++   P   ++L      + D+         A
Sbjct: 171 GLIETADTIDRNRRHLIDALEPRWSALVRRW-LPDEPVALHYRPGWRSDEP-------LA 222

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
            +L   R++D     T  GPHR+DL              S G+QK++++ + LA A +  
Sbjct: 223 DRLEAQRELDRQRGFTNSGPHRADLSFRVAG-VEAQHRLSRGQQKLLVLALLLAQAAVTH 281

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
             TG +  LL+D+++A LD  +R A+   +   G+Q F+T  +        + A++  + 
Sbjct: 282 TLTGQSLTLLVDDLAAELDPARRAAVVEAIASSGNQAFLTAIEPGDIPLAPDAAQWFHVE 341

Query: 369 NHQA 372
             + 
Sbjct: 342 QGRI 345


>gi|171912992|ref|ZP_02928462.1| recombination protein F [Verrucomicrobium spinosum DSM 4136]
          Length = 356

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 90/369 (24%), Positives = 156/369 (42%), Gaps = 21/369 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++++ + +FR +   RL    + T+ VG NG GKT++LEA   L   +  R ++ +D+
Sbjct: 1   MLLEWMQVRDFRCFTEARLALHPETTLLVGKNGQGKTSLLEAACVLMRLQSPRTSTRSDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-RVVDELNKHLRIS 123
            R G+ +  +     EG+ G      KL      + R + +ND V  R  D L +  R+ 
Sbjct: 61  IRFGAQTCVT-----EGVVG----GRKLRVAQSPTARRVAVNDSVCPRAGDYLIQSARVV 111

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSW 182
           W+  S   +  G +  RRR+LD     + P +   +  +ER +R RN LL          
Sbjct: 112 WMDHSDMNLARGGAEHRRRYLDFAAAQLFPEYLNALKSYERALRSRNFLLKRDAVISWRQ 171

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             +    +AE G  I   R E++  +   + E     +         G   G        
Sbjct: 172 VDAYGRILAEHGAAIRRCRDELVQRVQEPVTEAHLGLSA--------GVEPGAVAYVPGY 223

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E+    L + R  ++  R T +G HR DL +    +       S G+Q+ + + + LA
Sbjct: 224 PGEDLEAALMEVRDSEARLRTTQVGVHRDDLALTIHGRPAGA-FASEGQQRTLCLALKLA 282

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
            AR++    G  P+LL+D+I   LD+ +R AL   +   G Q  +T T            
Sbjct: 283 QARVLEEAQGEPPLLLIDDIFGELDKTRRQALLAYLPAHG-QKIITTTFTDWASETGVGG 341

Query: 363 KFMRISNHQ 371
               + + +
Sbjct: 342 MVYEVQDGR 350


>gi|300112750|ref|YP_003759325.1| DNA replication and repair protein RecF [Nitrosococcus watsonii
           C-113]
 gi|299538687|gb|ADJ27004.1| DNA replication and repair protein RecF [Nitrosococcus watsonii
           C-113]
          Length = 362

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 142/371 (38%), Gaps = 16/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L++  FRN     L       +  G N  GKT+ LEAI  L  GR FR       
Sbjct: 1   MYITHLDVRNFRNLKHTELHPAKGVNVLSGANSSGKTSFLEAIYLLGLGRSFRTVQLIST 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  S     A+V+   G     ++      R+    + N   ++   +L   L + +
Sbjct: 61  VQTGMES-LRVVAKVKQAGGSYITGVEFGPNGFRA----RTNGSTVKKRSQLATQLPLLY 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWC 183
           +      +  G    RR++LD  +F ++P        ++R ++ RN  L           
Sbjct: 116 MPSYSHIMLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHALRVHKPSWRQEI 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           +    +++  G +I   R  ++  L   + + ++   + P  ++++              
Sbjct: 176 NVWNKKLSTYGEQITSLREAILFKLRDSVSQLFMALVHQPLARVTMEFKQGWTRTAGLEE 235

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +       L +    D ++  T  GPHR+++      K +     S G+QK+    + L+
Sbjct: 236 I-------LNETLNYDRVTGYTRYGPHRAEVAFYVDGKDVREIL-SRGQQKIFCYSLALS 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
            A L+        + L+D+ ++ LD D R     ++  +G Q+F T  +    +    + 
Sbjct: 288 QADLLCRIKEQNCVFLMDDFASELDIDHRKRFLALLNKLGIQVFATTIESLSGEMKAYSG 347

Query: 363 -KFMRISNHQA 372
            K   +   + 
Sbjct: 348 IKEFHVELGRV 358


>gi|221632725|ref|YP_002521946.1| DNA replication and repair protein recF [Thermomicrobium roseum DSM
           5159]
 gi|254790496|sp|B9KZ04|RECF_THERP RecName: Full=DNA replication and repair protein recF
 gi|221155632|gb|ACM04759.1| DNA replication and repair protein recF [Thermomicrobium roseum DSM
           5159]
          Length = 396

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 168/394 (42%), Gaps = 29/394 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + EFR +  L LV   +    VG NG GKT+++EA+  L+  + FR +    +
Sbjct: 1   MLVRSLELEEFRCFRHLHLVLPDRGLRLVGANGSGKTSLIEALYMLATTKSFRASLERHL 60

Query: 65  TRI--GSPSFFSTFARV------EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                GS      +AR+      E      +I + ++       +  + +   +R V E 
Sbjct: 61  VHRSSGSELGIPPYARLAAELFTETERSTLEIVLMVDPASGTVRKLYRRDGRSLRAV-EF 119

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174
              LR+    P    + +G   +RRR+LD ++  ID  + R +  + R++  RN LL   
Sbjct: 120 VGTLRVVLFSPEDLELVTGSPQQRRRYLDTILSTIDRAYLRALARYTRILEHRNSLLKSL 179

Query: 175 ---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +        +  + Q+   G  + +AR+  +      + ++ Q  +     L+    
Sbjct: 180 AERDQRAADEQLAYWDEQLVTYGAYLLVARLRFLAEWGPRLRDHFQALDTQAQVLTTAYL 239

Query: 232 LDGKFDQSFCA-------------LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                 +S  +             +   Y + L   R  +     TL+GPHR D+     
Sbjct: 240 PSIDLPESLLSELAAREVADAQLIVGARYRETLERLRPDELRRGSTLVGPHRDDVEFLLG 299

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           ++ +T   GS G Q++ ++   LA   +I   T   P+LLLD+  + LD+  R  L   +
Sbjct: 300 EEPLTA-FGSRGVQRLAVIAAKLAEIAVIHRVTDDWPVLLLDDALSELDQQHRAHLLATL 358

Query: 339 TDIGSQIFMTGTDKSVFDS-LNETAKFMRISNHQ 371
           + + +Q+ +T T+  V ++ +  +    R+++ +
Sbjct: 359 SALPAQLILTATESDVLETPVLSSLPLFRLNDGR 392


>gi|227494191|ref|ZP_03924507.1| recombination protein F [Actinomyces coleocanis DSM 15436]
 gi|226831925|gb|EEH64308.1| recombination protein F [Actinomyces coleocanis DSM 15436]
          Length = 399

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/372 (19%), Positives = 149/372 (40%), Gaps = 30/372 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +++FR+Y    +      T+ +G NG GKTN++EAI++L+     R  +   +
Sbjct: 1   MYVSHLALNDFRSYKETLIELKPGITVLLGYNGQGKTNVIEAIAYLAHLSSHRVNADTAL 60

Query: 65  TRI---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            R    G     +   R +  +   +  +++E    ++ R  ++N    +  D L   ++
Sbjct: 61  VRYPQNGENPPAAAVIRAKLHKAQRERILEIEIVKGKANRA-RLNRAPAKPRD-LLGEIK 118

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------ 175
           +    P    +  G    RR FLD +   + P +     D+E++++ R  LL +      
Sbjct: 119 VIVFAPEDLNLVKGDPAGRRHFLDSIATQLWPSYGVVKADYEKVLKQRASLLKQLGKSLR 178

Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--- 230
                D +     +  +     ++   R++++  L+    E  +       +L L     
Sbjct: 179 AGMKPDYAMLEIWDQPLINYASQLISLRLKLLKMLTKPANEAHKIVANGVKELRLEYVNS 238

Query: 231 --FLDGKFD------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
                G+ D          A +    + L   R  + +    L+GPHR DL +   +  +
Sbjct: 239 LAEYSGEVDVNKLATDDIEAYQVLMKQVLESLRSAEVIRGVNLLGPHRDDLDLWLDELPV 298

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTG----FAPILLLDEISAHLDEDKRNALFRIV 338
                S GE   V + + L    ++ +         PIL+LD++ + LD  +R AL   +
Sbjct: 299 K-GFASHGESWSVALALRLGCFEILCSEDYLGAVETPILILDDVFSELDGKRRKALLEAI 357

Query: 339 TDIGSQIFMTGT 350
           +    Q+ +T  
Sbjct: 358 SGAE-QVIITAA 368


>gi|78187987|ref|YP_378325.1| RecF protein [Chlorobium chlorochromatii CaD3]
 gi|78170186|gb|ABB27282.1| RecF protein [Chlorobium chlorochromatii CaD3]
          Length = 364

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/361 (21%), Positives = 151/361 (41%), Gaps = 13/361 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K++    S FRN+ SL        TI  G NG GKT++LE I + +  +G   A  ++ 
Sbjct: 1   MKLQRTIFSGFRNHTSLLFEPSEGVTIIYGANGSGKTSLLEGIHYGALTKGLLGAPDSEC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               + +F      +        + +  +   ++ V    ++   ++        +    
Sbjct: 61  LSFDTEAFTLDSHFLSDSNIPIHVLVTYQLEGEKQV---IVDRQEVKPFSSHIGRIPTIT 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    + SG   ERRRFLD  +  +D R+  R+I + R+++ RN LL +       + 
Sbjct: 118 FSPYEISLVSGPPAERRRFLDSAISQLDHRYLDRLITYRRILQQRNALLAQLSSGEKSNR 177

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ---KENFPHIKLSLTGFLDGKFD 237
           +       Q+AEL   +   R+  + + S     Y +   K   P I    T       +
Sbjct: 178 NTLPLWTTQLAELSAWLVERRLLFLTSFSPYFQHYYRYIIKGEEPSINYRCTSCP-LHGN 236

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +F  L + + ++  D    +    +TL G HR D++    +K I   + S G+ +  L+
Sbjct: 237 TTFQELYQLFLQRYSDIEAQEIQRGQTLFGAHRDDVLFFLNEKEIK-RYASQGQLRSFLI 295

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + ++ A L ++     P+ L D++ + LD  +   +  ++ + G Q  +T  +    + 
Sbjct: 296 ALKISQAHLFADHLHEQPMCLFDDLFSELDGGRIEQILALLKECG-QTIITAVEPRYTEG 354

Query: 358 L 358
           +
Sbjct: 355 I 355


>gi|225157625|ref|ZP_03725015.1| DNA replication and repair protein RecF [Opitutaceae bacterium
           TAV2]
 gi|224802692|gb|EEG20945.1| DNA replication and repair protein RecF [Opitutaceae bacterium
           TAV2]
          Length = 375

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/382 (22%), Positives = 151/382 (39%), Gaps = 23/382 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + +  FRN A   L  D +    VG NG GKTN+LEA  F++  R FR      +
Sbjct: 1   MRLRRITLQNFRNIAFADLALDGRLQFLVGANGQGKTNLLEAAGFVTALRSFRTTDARIL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G P             G   + IKL        + +  +   I  + +         
Sbjct: 61  IRQGQPEAAIACEFEHEHLGSTRLLIKL----RTDGKEVWCDGERISRLADHLGRFPTVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                 ++  G    RRR+LD  + A DP + R +  + + + GRN LL          +
Sbjct: 117 FSSQDQQLVRGAPALRRRWLDLTLSATDPAYLRALQTYHQALAGRNNLLKRQAP-PPQLA 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSL-------TGFLDGK 235
           + E  +A    +++  R   I  L+  +     +   +     ++L       +      
Sbjct: 176 AFEHPLAAAAAELSAKRTAGIADLAQHVTTAYARIADHAEPTDIALRADNATPSAGEPPP 235

Query: 236 FDQSFCAL-----KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            D    AL     +  +       R  D   R TL GPHR DL++    ++    +GS G
Sbjct: 236 LDAGCSALDVGRSQRAWLALFEHARARDLQMRTTLTGPHRDDLLLRVGGRS-ARDYGSEG 294

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+ + + + LA      + TG  PILL D++   LD  +R   +  + D   Q+  TGT
Sbjct: 295 QQRCLALALRLAQVEFFRHKTGLEPILLADDVLGELDPARRRRFWTSLGDTR-QVIATGT 353

Query: 351 DKSVFDSLNETAKFMRISNHQA 372
             ++ D+     +  +++    
Sbjct: 354 --TLPDTTLGHWQLYQVTEGAV 373


>gi|149919819|ref|ZP_01908296.1| DNA replication and repair protein RecF [Plesiocystis pacifica
           SIR-1]
 gi|149819426|gb|EDM78857.1| DNA replication and repair protein RecF [Plesiocystis pacifica
           SIR-1]
          Length = 406

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 86/401 (21%), Positives = 159/401 (39%), Gaps = 34/401 (8%)

Query: 5   IKIKFLNISEFRNYASL---------RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
           ++++ L +++FRN+             L F  + T+  G NG GKTN+LEA+   S  R 
Sbjct: 1   MELRRLTLADFRNFRGATPEQPGPGVELAFGERFTVLWGHNGAGKTNVLEALYLCSTLRS 60

Query: 56  FRRASYADVTRIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVD 114
           FR      + R G           +   GL   + ++++     + R  +++  ++R   
Sbjct: 61  FRTTDAKALLRRGQDHARVELEAFDDDLGLDTCLEVRIDRGARSTRRSARVDGKLVRSAT 120

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           +    ++     P    I  G    RR+FLDR++FA    H   +  +E+L+R RNR+L 
Sbjct: 121 DFYGRVQAVLFTPEDLGILRGSPGGRRQFLDRVLFARQRAHIADVQRYEKLLRSRNRVLK 180

Query: 175 EGYFD------SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN-------- 220
               +      +    + +  +AE+G +I   R  ++  L           +        
Sbjct: 181 TDPAELPRAERTRMLDTYDHGLAEVGAQIWDRRQGLVEDLREPFAAAFAHIHDRRDPGEG 240

Query: 221 --------FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
                       ++           +     ++  A+ L D R+ D  + RT +GPH  D
Sbjct: 241 GAALAAGLAYGARVLTRESQPATAVEDLPGRQQALAQALRDTRRRDEAAGRTTVGPHLDD 300

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           L V   D        S G+ + +++   +A  R      G  P LLLD++S+ LD  +  
Sbjct: 301 LHVRL-DGVEAGDFASQGQARALVLAFKIAELRDAQQRHGRRPTLLLDDVSSELDPRRSA 359

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF-MRISNHQA 372
            LF  +     Q  +T TD    +      +  +++ + Q 
Sbjct: 360 RLFETLAQEVGQCVLTTTDARYIELGAGVERRDLQVRDGQI 400


>gi|296392443|ref|YP_003657327.1| DNA replication and repair protein RecF [Segniliparus rotundus DSM
           44985]
 gi|296179590|gb|ADG96496.1| DNA replication and repair protein RecF [Segniliparus rotundus DSM
           44985]
          Length = 401

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 88/371 (23%), Positives = 150/371 (40%), Gaps = 30/371 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++    I +FR++    +  D   T+F+G NG GKTN++EA+  LS     R A  A +
Sbjct: 1   MRVSSFEIRDFRSWEHAAMRLDEGCTLFLGRNGYGKTNLVEALGVLSSLSSHRGAQNAAM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+   F +    E +     +++ L     ++ +  Q+N V  R   E+   LR  +
Sbjct: 61  VRRGAAEAFLSA---EVLNEGRKLTVGLRIAPGKATKA-QLNGVN-RPTREVAGILRTVF 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------E 175
             P    +  G   ERRRFLD  +    PR      DFER++R R  LL           
Sbjct: 116 FSPEDLALVRGEPGERRRFLDETLIVRQPRMAGVKADFERVLRQRATLLKSLSGARGAAR 175

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-------------NFP 222
                +   + + Q A     + +AR++++ ALS  +                    +  
Sbjct: 176 NDEARATLEAWDEQFASRAAALTVARLDLVRALSPRVGRCYAAIDPLSDDAELRYRMSAE 235

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
                 TG      + S   +     ++L   R+ +    + L+GPHR DL +     A 
Sbjct: 236 DADQEETGGEAPVGETSEPQVANAVMERLSQLREEELRRGQCLVGPHRDDLELRLAGGAA 295

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
                S GE     + + +A   L+    G  P+L+LD++ A LD  +R  +   +    
Sbjct: 296 RA-FVSHGEAWSYALALRVAAFELLREE-GHDPVLVLDDVFAELDGPRRE-VVAGLAKKA 352

Query: 343 SQIFMTGTDKS 353
            Q  +T  D +
Sbjct: 353 EQTLITAADPA 363


>gi|297588054|ref|ZP_06946698.1| recombination protein F [Finegoldia magna ATCC 53516]
 gi|297574743|gb|EFH93463.1| recombination protein F [Finegoldia magna ATCC 53516]
          Length = 355

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/353 (22%), Positives = 156/353 (44%), Gaps = 13/353 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  +RN+  + L F     + VG N  GKTNILEAI+    G+ F+  + + +
Sbjct: 1   MIVQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            + G            +G E   DI+IK       + + L +N+  +  + E N++    
Sbjct: 61  IKFGEDEARIVMDVYDDGFEDKIDITIK------SNEKILNVNEAFVNTIKEYNEYFECI 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS--- 180
              P   +I       RR+ LD  +  +D  +R  +  + +++  RN+L+    ++S   
Sbjct: 115 VFKPDDLKIVKESKSLRRKLLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNSYFN 174

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               ++  Q+A+ G  I   R   +  L  +        +  + KL +      ++ +  
Sbjct: 175 EQLKALNIQLADNGSYIMHKRKSYVERLHLIAKNVCSNLSDENDKLDMENNFSIEYVEDM 234

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              K  Y K L D    D  +++T +G HR DL +   DK+      S  + +  ++ + 
Sbjct: 235 TNQKNTYYKSLVDILDKDLENKQTNLGIHRDDLDILINDKSAKF-FASQAQVRTAILSMK 293

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           LA   L        PI+LLD++ + LD+ + N + R + D   Q F+T ++++
Sbjct: 294 LAQLDLSRFYNDRLPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSERA 344


>gi|254282777|ref|ZP_04957745.1| DNA replication and repair protein RecF [gamma proteobacterium
           NOR51-B]
 gi|219678980|gb|EED35329.1| DNA replication and repair protein RecF [gamma proteobacterium
           NOR51-B]
          Length = 357

 Score =  253 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 142/371 (38%), Gaps = 17/371 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I   RN     +   +   +  G NG GKT++LEAI  L+ GR FR  S   V  
Sbjct: 2   IKQLAIEGVRNL-DASVSLGSSANLLYGRNGSGKTSVLEAIHLLAVGRSFRANSAKPVIG 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   T    EG     +  + ++   D SV   +IN   +  +  L + L +  + 
Sbjct: 61  FDRDHCLVTATVTEGN---RNQQLGIQRSKDGSV-IARINGEAVTSLAMLAEVLPVVVMD 116

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
             +  +  G    RRRF+D  VF ++         F+R +R RN  L  G  +     + 
Sbjct: 117 SGIVSLIDGQPEGRRRFIDASVFHVEQSFLPAWRRFQRALRQRNAGLRRGTLEGD--EAW 174

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
             ++A  G K+   R   ++AL +  +   +  +     ++L                  
Sbjct: 175 RREVASAGQKLTEMRSVALDALQARFVASAEALSDDIAGMALVFRAGWDKTVG------- 227

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
             + L    + D +   T +GPHR+D+ +   D        S G+ K+    + LA   L
Sbjct: 228 LLEALERSLESDRLQGFTHVGPHRADIKL-LIDGRPAAEVMSRGQLKLAATALKLAQGGL 286

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL--NETAKF 364
           I+  +   P+ L+D++ A LD     A+   +   G Q+  T  D+    +         
Sbjct: 287 IAQQSRSTPVYLVDDLLAELDSGHSRAVCDQLVAAGGQVVFTAVDRDEVPAFWSGSELTL 346

Query: 365 MRISNHQALCI 375
             +     + +
Sbjct: 347 FHVEQGSVVSV 357


>gi|212550984|ref|YP_002309301.1| DNA replication and repair protein RecF [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|259563354|sp|B6YRR8|RECF_AZOPC RecName: Full=DNA replication and repair protein recF
 gi|212549222|dbj|BAG83890.1| DNA replication and repair protein RecF [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 366

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/375 (21%), Positives = 145/375 (38%), Gaps = 20/375 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + I  F+N     L F  +    +GDNG+GKTN+L+A+ +L+  +     + + +
Sbjct: 1   MIIEIVTILNFKNIEEGSLSFSPKINYLLGDNGMGKTNLLDALYYLAFTKNHTNLTDSQL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F    A  +  + + +I   ++    +  +  + N    + + E    +    
Sbjct: 61  INYN-KDFAVLHAFYKDKDNIEEIYCGIKL---KQRKIFKRNKKEYKKLSEHIGLIPTVM 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSSW 182
           + P+   +    S ERR+F D ++   D  + R +I + + ++ RN LL           
Sbjct: 117 VSPNDTNMIQFGSNERRKFADMLISQYDKEYLRTLIYYNQALQQRNFLLRNALPSLSGEE 176

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E QM   G  I   R         L  EY    +  +  + L              
Sbjct: 177 FEIWEEQMGTTGEIIYQKRKNFTTDFLPLFKEYYYTISDKNETIDLEYVSHLDDH----- 231

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 + L++ R+ D +   T  G H+ D      +  I    GS G+ K  L+ + LA
Sbjct: 232 ---SLFELLYEKRERDKILGFTSTGIHKDDFNFLLNNFLIR-KIGSQGQNKTYLIALKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL--- 358
               +       PILLLD++   LD  +   + R++      QIF+T T++   D++   
Sbjct: 288 QFSFLVQKGLSIPILLLDDLFDKLDAKRVEKIIRLLAQKTFGQIFITDTNRKHLDNILTK 347

Query: 359 -NETAKFMRISNHQA 372
                K   +SN   
Sbjct: 348 MQHAYKLFYVSNGTI 362


>gi|88607598|ref|YP_505900.1| recombination protein F [Anaplasma phagocytophilum HZ]
 gi|88598661|gb|ABD44131.1| putative DNA replication and repair protein RecF [Anaplasma
           phagocytophilum HZ]
          Length = 371

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 109/366 (29%), Positives = 178/366 (48%), Gaps = 6/366 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + +  FRNY+ + L  + +  + +G+NGVGKTNILEA+S LS G G R  S   +  
Sbjct: 9   VQVVKLVNFRNYSKVELESNGKSVVLLGENGVGKTNILEAVSLLSKGPGLRNVSADCMQN 68

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+   +     + G      + I        + R + I+     +   L+K L I WLV
Sbjct: 69  SGTTIPWLVHYNIVGNGEFFSVDIT----KKNNKRSVTID-EKASLYSTLHKILCILWLV 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P +D I      ER RF DRMV   D  +   M+ +E+  R R ++L E   +  W SS+
Sbjct: 124 PQLDHILLKAPTERLRFFDRMVHIFDKDYSLHMVKYEKAKRDRKKILQESPHNHHWLSSL 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E  M+  GV I   R  ++  L + + E+  +  F    + L   +    D    A+ + 
Sbjct: 184 EEIMSASGVHIAKIRQHVLETLHATLAEHSSRSTFFKFIIRLESKVFELLDNPDKAV-DA 242

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           YA++L   R +D+  + T  G H  +  V    K +  +  STGEQK++L+ + L  A  
Sbjct: 243 YAERLRSNRNIDAARQCTTFGVHNDNFQVFNEKKDLVASSCSTGEQKILLLSLLLTAATA 302

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
                G API+LLD+I +HLD   R  L  I+  +G Q+++T  D+  F+   E  ++  
Sbjct: 303 KHKIDGQAPIMLLDDIMSHLDPQHRKELMSIIEHLGCQVWITDVDEKNFEGFRENFQYFH 362

Query: 367 ISNHQA 372
           ++N+  
Sbjct: 363 VANNNV 368


>gi|167957125|ref|ZP_02544199.1| DNA replication and repair protein RecF [candidate division TM7
           single-cell isolate TM7c]
          Length = 347

 Score =  252 bits (645), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 151/347 (43%), Gaps = 14/347 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +   R++         + T+ +G NG GKT +LEA+     G  FR +   D+
Sbjct: 1   MDITHLEVRNLRSHELESRDITERVTVIIGKNGSGKTTLLEALYIALRGTSFRGS-DNDI 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     +     R+       D SI  +   + S R   + D         NK + +  
Sbjct: 60  LQHDKDWW-----RIHVSTTNGDRSIAYDNSGENSPRKKILIDERKFQRMPSNKKIPVVL 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   R+  G    RR F+D  +  I+P +   +  +ER ++ RN LL +     S   
Sbjct: 115 FEPDDLRVLHGSPSRRRNFIDTFIMHINPHYGTIIRKYERALKQRNTLLKQENASRSNIF 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + +  MA+ G +I   RV +I+ ++  + +  Q     +  + L              ++
Sbjct: 175 AWDMAMAQYGAEIISQRVMIISKINQELTKTYQSIAGNNDTVDLHYS-----HTLIDNIQ 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           ++ A  L+   + D +   T +GPHR D++ ++  + I     S GE + +++ +     
Sbjct: 230 QKLANMLYASFERDKILGFTSVGPHRHDVMFEFNGQ-IAAKVASRGEVRSIILALKFIEV 288

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            +    TG +P++LLD++ A LDE ++  L     D  +Q+F+T T+
Sbjct: 289 DITQEATGLSPVILLDDVFAELDETRQRRLAEKCRD--NQMFITSTN 333


>gi|148358142|ref|YP_001249349.1| DNA recombination/repair protein ATPase RecF [Legionella
           pneumophila str. Corby]
 gi|148279915|gb|ABQ54003.1| DNA recombination and repair protein ATPase RecF [Legionella
           pneumophila str. Corby]
          Length = 353

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 152/369 (41%), Gaps = 20/369 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + I  FRN AS  L+ +       G NG GKT++LEA+  LS    FR    A +
Sbjct: 1   MILSEVRIHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVAPI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G     + FA        + IS++    D      +++N+       +L   L    
Sbjct: 61  ISYGQNQ-LNVFAH---TYDESTISVQKSITDGTQ---IKLNNQFCCTTSQLAYALPCQV 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +   + +I       RR  LD  +F +   + +   D++R++  RN LL        +  
Sbjct: 114 IYSDIFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHFI- 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+++L  +++ AR +          + +   +  +I  ++  +       +   ++
Sbjct: 173 PWDQQLSQLANQLDKARNDYFLQWQPKFYQVLS--DLTNISCTIEYYKGWDRKNAGQNME 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E     L      D     T  GPH++DLI++     +     S G+QK++L+ + LA  
Sbjct: 231 E----LLQKSFDSDKNKLYTQYGPHQADLIINIEQYRVKHTL-SRGQQKIILIALKLAQG 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           +L+        + L+D+++A LD+  +  L + +T    Q  +T   + + +D L   + 
Sbjct: 286 QLL----DKDCLYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITNLINNNNYDILPIDSG 341

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 342 LFEVNCGAI 350


>gi|108802860|ref|YP_642797.1| DNA replication and repair protein RecF [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764103|gb|ABG02985.1| DNA replication and repair protein RecF [Rubrobacter xylanophilus
           DSM 9941]
          Length = 374

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 89/374 (23%), Positives = 159/374 (42%), Gaps = 22/374 (5%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            I+ + +  FRNYA    +      + VG+N  GKTN+LEA++F+  G   R  + ++V 
Sbjct: 4   HIRAIRLVNFRNYAGATALLSPGLNVLVGENAQGKTNLLEALAFVVSGSSPRTPNDSEVV 63

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN---KHLRI 122
           R G   F    ARV        +++        S + L ++   +  +         +R 
Sbjct: 64  RWG-EGFVRVEARVVDGGHERRLAVGY---APGSRKRLTVDGAPVESLARYAAGVAGVRA 119

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFD 179
               P   R+  G   +RR FLD ++ ++ P + R   ++ R ++ RN+LL     G   
Sbjct: 120 VTFFPDDLRVVKGSPSDRRSFLDALLSSLRPAYARAAAEYARAVQQRNQLLRRIRDGLSS 179

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
               ++ + ++ ELG+ +   R      L       ++    P                S
Sbjct: 180 ERTLATWDRKVVELGLVLLEGRAAAAAPLDEHFRASMRALYGPQ---------KAAVGYS 230

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           + A  E YA+ L +    D     T +GPHR DL +      +T  +GS G+Q++  + +
Sbjct: 231 YSATPERYAQALREAHSADIERGITSVGPHRDDLRILLEGVDLT-TYGSQGQQRLATLAL 289

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SL 358
             A    I + TG  P+LL D++ + LDE +R+ L     +  +Q  ++ T+   F+   
Sbjct: 290 KFAARDYIRDATGQDPVLLFDDVMSELDERRRDYLAGCFLE-STQAVISTTNLRYFEPGA 348

Query: 359 NETAKFMRISNHQA 372
              A+ + IS    
Sbjct: 349 LRRARVLGISGGSI 362


>gi|294010882|ref|YP_003544342.1| DNA replication and repair protein RecF [Sphingobium japonicum
           UT26S]
 gi|292674212|dbj|BAI95730.1| DNA replication and repair protein RecF [Sphingobium japonicum
           UT26S]
          Length = 356

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 135/368 (36%), Positives = 193/368 (52%), Gaps = 18/368 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +S+FRN+A   ++ D    +  GDNG GKTNILEA+S L+PGRG R A+  D+ R
Sbjct: 2   IGRLTLSDFRNHADALIMPDHSFIVLTGDNGAGKTNILEAVSMLAPGRGLRGAALRDMAR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 F   A V+G+  +    +     D R VR       V    + L  HL I WL 
Sbjct: 62  QDGAGGFGIAAEVDGV--MLGTGVLASAPDRRQVRI----GGVASSANALADHLSIVWLT 115

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSS 185
           P+MDR+F      RRRFLDR+  A+ P H      +E  MR RNRLL +    D SW S+
Sbjct: 116 PAMDRLFMDSPGGRRRFLDRLTLALHPAHAAHSARYEAAMRARNRLLNDLSAADPSWLSA 175

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +E QM E G  +  AR +++  L +  +E      F    L++ G  +G+ D+       
Sbjct: 176 LETQMDEHGAALAAARADLVGRLQA-ALEDQPDHPFARPLLAIEG--EGEGDEPLGLRLA 232

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
              ++     +       TL GPHR DL V +  KA   A  STGEQK +L+ I LAHA 
Sbjct: 233 RERRRDAAAGR-------TLSGPHRQDLAVVHAAKAQAAALCSTGEQKALLLSILLAHAA 285

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L++   G  P+LLLDE++AHLD  +R ALF  + + GSQ++MTGT+ ++F+ L   ++  
Sbjct: 286 LVAAHRGQPPVLLLDEVAAHLDPSRRAALFDRLRETGSQVWMTGTESALFNGLPVASR-F 344

Query: 366 RISNHQAL 373
            ++     
Sbjct: 345 CVTAGHVF 352


>gi|182680050|ref|YP_001834196.1| DNA replication and repair protein RecF [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635933|gb|ACB96707.1| DNA replication and repair protein RecF [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 403

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 136/367 (37%), Positives = 197/367 (53%), Gaps = 3/367 (0%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +S+FR+Y +L L   A+  +  G+NG GKTN++EA+S  +PGRG RR   A   R
Sbjct: 15  VRRLILSDFRSYPALDLSLGAKMIVVTGENGAGKTNLIEALSLFTPGRGLRRVELASCAR 74

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRISWL 125
              P  F+    +E       +   L  R +    R  +I    +        HLRI WL
Sbjct: 75  AEGPGGFAVSIEIETGAERVQLGTGLVPRSEGGFARQYRIERAPVGSARSFADHLRIVWL 134

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P+ D +F+    ERRRFLDR+V  +D  H  R+   ER +R RNR L + Y DS W  +
Sbjct: 135 TPAQDGLFAASPGERRRFLDRLVLCVDAEHGARVTVLERALRNRNRQLEDHYADSRWLDA 194

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKF-DQSFCAL 243
            E ++AE+ V +  ARVE +  L  LI E       FP   L + G L+    ++     
Sbjct: 195 TEKEIAEIAVAVAAARVETVARLRRLIDESRDTITPFPWADLEIRGDLERLVGERPALEA 254

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E Y   L D R+ D+ + R L+GP  SDL+V +  K    A  STGEQK +LVG+ LAH
Sbjct: 255 EELYRGILRDNRRRDAAAGRALVGPQNSDLLVRHGPKQADAARSSTGEQKALLVGLVLAH 314

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           ARL++  T  AP++LLDEI+AH D  +R AL+  +  +  QI+MTG + S F  L + A 
Sbjct: 315 ARLVARATQTAPMILLDEIAAHFDASRRVALYEELAALPGQIWMTGAEASAFSGLADHAD 374

Query: 364 FMRISNH 370
            +++   
Sbjct: 375 LLQVRPG 381


>gi|54295986|ref|YP_122355.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str.
           Paris]
 gi|53749771|emb|CAH11151.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str.
           Paris]
          Length = 353

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/369 (20%), Positives = 151/369 (40%), Gaps = 20/369 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + I  FRN AS  L+ +       G NG GKT++LEA+  LS    FR    A +
Sbjct: 1   MILSEVRIHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVAPI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G     + FA        + IS++    D      +++N+       +L   L    
Sbjct: 61  ISYGQNQ-LNVFAHA---YDESTISVQKSITDGTQ---IKLNNQFCCTTSQLAYALPCQV 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +   + +I       RR  LD  +F +   + +   D++R++  RN LL        +  
Sbjct: 114 IYSDIFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHFI- 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+++L  +++ AR +          + +   +  +I  ++  +       +   ++
Sbjct: 173 PWDQQLSQLANQLDKARNDYFFQWQPKFYQVLS--DLTNISCTVEYYKGWDRKNAGQNIE 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E     L      D     T  GPH++DLI+      +     S G+QK++L+ + LA  
Sbjct: 231 E----LLQKSFDSDRNKLYTQYGPHQADLIISIEQYRVKHTL-SRGQQKIILIALKLAQG 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           +L+        + L+D+++A LD+  +  L + +T    Q  +T   + + +D L   + 
Sbjct: 286 QLL----DKDCLYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITNLINNNNYDILPIDSG 341

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 342 LFEVNCGAI 350


>gi|319785623|ref|YP_004145098.1| DNA replication and repair protein RecF [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464135|gb|ADV25867.1| DNA replication and repair protein RecF [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 376

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 81/371 (21%), Positives = 153/371 (41%), Gaps = 11/371 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FR +    L       + +G NG GKT++LEA+  ++ GR FR      +
Sbjct: 1   MRVTRLQLRDFRRFHETGLEPGPGVNLILGANGAGKTSVLEALHLMAYGRSFRGRVRDGL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  + +        +          +   R        +++   +  + EL   L +  
Sbjct: 61  VRESAAALEVFVEWEQADAVGVPQLRRAGLRHAGDTWTGRLDGRDVAQLGELCAALAVVT 120

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG +  RRRF+D  +F ++         + R +R RN LL  G  + +   
Sbjct: 121 FDPGSHALISGAADNRRRFMDWGLFHVEQDFLPPWRRYARALRQRNALLKAGGSN-AQLD 179

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++AE G  +   R   +  L   +++   + +     L L G    +F   +   +
Sbjct: 180 AWDHELAESGEALTSHREAYLAELEPQVLDTAARLSG---SLHLQGL---EFQPGWRRHE 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
              A  L  GR  D     T +GPHR+D  + Y       A  S G+ K+  + + LA A
Sbjct: 234 VPLADALLLGRDRDRAMGYTGVGPHRADWKLGYVGLPGREAL-SRGQTKLAALAMLLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGTD-KSVFDSLNETA 362
           R  +   G  P++ LD++ + LD + +  + R + D  G Q+ +T T+     ++L    
Sbjct: 293 RDFARRRGHWPVMALDDLPSELDREHQQRVLRFLADQPGVQLLVTATETPPALEALEGLP 352

Query: 363 KF-MRISNHQA 372
            F   + +   
Sbjct: 353 MFVFHVEHGAI 363


>gi|229816999|ref|ZP_04447281.1| hypothetical protein BIFANG_02254 [Bifidobacterium angulatum DSM
           20098]
 gi|229785744|gb|EEP21858.1| hypothetical protein BIFANG_02254 [Bifidobacterium angulatum DSM
           20098]
          Length = 384

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 143/371 (38%), Gaps = 15/371 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FR++  + + F     +  G NG+GKTN++EA+  LS G   R  S   +
Sbjct: 1   MYISRLALDHFRSWNQVVVDFTPGVNVLYGANGLGKTNLVEAVEVLSTGGSHRVNSSLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G        A +      A+ +    T   R     ++N    + + ++   +    
Sbjct: 61  VERGYGK-----ATIRVNANTAETTTYEVTIAARGANRARVNSGPSQYLRDVVGLVPSVS 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179
             P   R+ S     RR FL++    + P +  R+  F ++ R R  LL      EG  D
Sbjct: 116 FTPEDQRLISADPATRRGFLNQSAGMLIPGYTGRLQRFTQIARQRAALLKQLGQHEGSAD 175

Query: 180 SSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
           +          Q  E GV +   R E++  L++   +   +    H K  +         
Sbjct: 176 AVLSGLEVWTGQFIEAGVALTRMRNEVMGILATPFSDIYARLASGHGKAEIVYEPSFVEV 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +     +   ++        +      LIGP R D  V   D        S GE   + +
Sbjct: 236 RDCDTPELNISEHFQRLYPGEVSRGMNLIGPQRDDFSV-LLDGEPARDFASNGEMWTMAL 294

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + +A    I+ + G  PI++LD++ A LDE +R+ +     D   Q+ +T    S    
Sbjct: 295 SLKMALFEAIAESRGIRPIVILDDVFAQLDESRRHQILDFAND-QDQVLVTAAAASDIPQ 353

Query: 358 LNETAKFMRIS 368
            ++ A  + ++
Sbjct: 354 -DDRANIIDVA 363


>gi|289705898|ref|ZP_06502277.1| DNA replication and repair protein RecF [Micrococcus luteus SK58]
 gi|289557383|gb|EFD50695.1| DNA replication and repair protein RecF [Micrococcus luteus SK58]
          Length = 404

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 86/380 (22%), Positives = 153/380 (40%), Gaps = 24/380 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +++FR+Y    L   +  T+ +G NGVGKTN++EAI +L   +  R +S A +
Sbjct: 1   MYLSHLTVADFRSYRWADLELTSGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G         RV    G   ++++LE    RS R        +R  + L   LR   
Sbjct: 61  VRFGRDRA-RIAGRVH--RGSRTVALELEILPGRSNRVAINRGAPVRAKEGL-GILRTVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
             P    + +G    RRR LD+++  + P       D+ER++R RN LL        W  
Sbjct: 117 FAPEDLSLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKSSRGSRRWGP 176

Query: 183 -----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
                 +  +  +   G ++   R+ ++  L+  + E            +          
Sbjct: 177 EEDATLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLA 236

Query: 238 QS-------FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           +           L  +  + L   R+ +     TL+GPHR +L +     A    + S G
Sbjct: 237 RGTHAEVPAVADLAADMRRTLESQREEERARSLTLVGPHRDELALFLGP-APARGYASHG 295

Query: 291 EQKVVLVGIFLAHARLISNTTGFA---PILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           E   + + + +A   ++          P+L+LD++ A LD  +R  L  +V     Q+ +
Sbjct: 296 ETWSLALALRMAAYDVLVADDPDPDARPVLILDDVFAELDAARRRRLAALV-HRAEQVIV 354

Query: 348 TGTD-KSVFDSLNETAKFMR 366
           T    + V + L      +R
Sbjct: 355 TAAALEDVPEELTAHRVLIR 374


>gi|139439855|ref|ZP_01773220.1| Hypothetical protein COLAER_02254 [Collinsella aerofaciens ATCC
           25986]
 gi|133774783|gb|EBA38603.1| Hypothetical protein COLAER_02254 [Collinsella aerofaciens ATCC
           25986]
          Length = 368

 Score =  252 bits (643), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 152/368 (41%), Gaps = 15/368 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +  + L+++ +R++ S RL  D   TI  G N  GKTN++EA+  L+ G  FR  + A++
Sbjct: 3   MFARDLSVAHYRSFDSYRLALDEGVTILAGPNAAGKTNLIEALQLLTSGASFRHPTAAEL 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  S      R+EG   + D+ +  E       R    N             L    
Sbjct: 63  VHDGVGSC-KVELRLEGDGRVLDMGLSAED----GKRSFSRNGKRCSAAGV-RGVLPSVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +    +  RR  LD     +  R+      + R +  RN LL E +       
Sbjct: 117 FCPDHLDMVKRGASVRRAALDDFGMQLSARYADLASTYGRCVTQRNALLKEAWCCREMLG 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIM-EYVQKENFPHIKLSLTGFLD-----GKFDQ 238
           +    +A  G  + + R+ +++ L+  +   Y Q  +     +S    L         ++
Sbjct: 177 AWNDSIARAGAALLVHRLALLDRLAGHVRTAYGQVASGEAANVSYASTLGDLPQVDDREE 236

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                 E     L +    +     TL+GPHR ++      ++   +  S G+Q+ +++ 
Sbjct: 237 LKGWAYERMLAALDEHADEEIRRGVTLVGPHRDEIEFAVAGRS-ARSFASQGQQRTLVLA 295

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DS 357
             +A   +  +  G AP+LLLD++ + LD ++R A  R++ D   Q  +T T+   F D 
Sbjct: 296 WKVAEVAVARDVLGTAPLLLLDDVMSELDGERRGAFLRLIGD-DIQTVITTTNLGYFTDD 354

Query: 358 LNETAKFM 365
           L + AK +
Sbjct: 355 LLDRAKVV 362


>gi|257466632|ref|ZP_05630943.1| RECF protein [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917786|ref|ZP_07914026.1| DNA replication and repair protein recF [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691661|gb|EFS28496.1| DNA replication and repair protein recF [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 364

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 172/370 (46%), Gaps = 14/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + ++  RN  +  ++  +   +F G NG GKT+ILEAI F + G  FR    +++
Sbjct: 1   MKVLSIQLNHVRNLKNQEIIISSPIQVFYGKNGQGKTSILEAIYFAATGLSFRTKHSSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +   +    +       +S+ +E       +        I  + E   +L + +
Sbjct: 61  IRYTKNTLSCSLG-YQDQFSKKSLSVSIE----NEKKQFFFLGKKISQM-EFYGNLNVIY 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F+DR +  I+  + +++  F  L++ RN+ L E  + +    
Sbjct: 115 YIPEDVMLINGSPSVRRLFMDREISQINVFYLQQLKKFSHLLKIRNKYLKEKLYQNEEFL 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQSFCA 242
             E +  E G  +   R   +  +SS I    Q       +L L    F++ + D +   
Sbjct: 175 IYEKEFVECGSYLIEQRNHYLQLMSSFIKNIYQDLFDKEKELQLQYKTFIEFQNDVTLSK 234

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++EE+ K++   ++ +     +++GPH+ +  +   ++     + S GE+K ++  + L+
Sbjct: 235 IQEEFWKEIKKKKEKEIQYGFSMVGPHKDEF-IFLLERQDAKLYASQGEKKSIIFSLKLS 293

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              ++S      PI+L+D+++++ DE++ +++ + + +   Q+F+T T++     L   A
Sbjct: 294 EIDILSKNKKEMPIVLIDDVTSYFDEERCHSVLQYLYEKKVQVFITSTER-----LKIEA 348

Query: 363 KFMRISNHQA 372
            + RI   + 
Sbjct: 349 DYYRIEKGEV 358


>gi|42521081|ref|NP_966996.1| recombination protein F [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410822|gb|AAS14930.1| recF protein [Wolbachia endosymbiont of Drosophila melanogaster]
          Length = 365

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 109/371 (29%), Positives = 174/371 (46%), Gaps = 13/371 (3%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M     IK L +  FR++++  L  D    +  G NG+GKTNILEAIS L+   G ++A 
Sbjct: 1   MATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAK 60

Query: 61  YADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +++  R  +  +   +    GM+     SI +    D+  + +QI+         L K 
Sbjct: 61  ASEIQNRFSNEDWVVHYDFFNGMDFN---SIGIAKSFDK--KLIQIDGKTQSSYSSLYKI 115

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             + WL+P MD +      +R +FLDR+V   +  +    +   +  R R++LL E   D
Sbjct: 116 SNVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +W SS+E  MA   V I   R  ++  L   I +    E FP   L  +  L      +
Sbjct: 176 ENWLSSLENIMAVNAVSILRMRSSVLKTLQDTI-DNHSSEFFPKASLKFSSQL------T 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                E +   L + R+ DS++ R   G H  +  V    + + I   STGEQK++L+ I
Sbjct: 229 LDDTAEYFQNLLKENREKDSLTGRVTFGVHNDNFRVFCQKRNVPINLCSTGEQKLLLLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L+  +        AP+LLLD+I +HLD+  R AL   V  I  Q ++T  ++  F+S  
Sbjct: 289 ILSSVKARCIHYNKAPLLLLDDIMSHLDKHYRKALMEEVLSIQCQTWITDVNQDNFNSYL 348

Query: 360 ETAKFMRISNH 370
            + KF  +SN 
Sbjct: 349 YSFKFFELSNE 359


>gi|225677102|ref|ZP_03788104.1| recombination protein F [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590861|gb|EEH12086.1| recombination protein F [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 365

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 106/371 (28%), Positives = 175/371 (47%), Gaps = 13/371 (3%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M     IK L +  FR++++  L  D    +  G NG+GKTNILEAIS L+   G ++A 
Sbjct: 1   MATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAK 60

Query: 61  YADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +++  R  +  +   +    GM+     SI +    D+  + +QI+         L K 
Sbjct: 61  ASEIQNRFSNEDWIVHYDFFNGMDFN---SIGIAKSFDK--KLIQIDGKTQSSYSSLYKI 115

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             + WL+P MD +      +R +FLDR+V   +  +    + + +    R++LL +   +
Sbjct: 116 SNVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKYRKAKHERSKLLRKNILN 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +W SS+E  MA   V I   R  ++  L   I +    E FP   L  +  L      +
Sbjct: 176 KNWLSSLENIMAVNAVSILRMRSSVLKTLQDTI-DNHSSELFPKASLKFSSQL------T 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                E +  +L + R+ DS++ R   G H  +  V    + + I   STGEQK++L+ I
Sbjct: 229 LNDTAEYFQNRLKENREKDSLTGRVTFGVHNDNFRVFCQKRNVPINLCSTGEQKLLLLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L+  +        AP+LLLD+I +HLD+  R AL   V  I  Q ++T  ++  F+S  
Sbjct: 289 ILSSVKARCIHYNKAPLLLLDDIMSHLDKHYRKALMEEVLSIQCQTWITDVNQDNFNSYL 348

Query: 360 ETAKFMRISNH 370
            + KF  +SN 
Sbjct: 349 YSFKFFELSNE 359


>gi|220907659|ref|YP_002482970.1| recombination protein F [Cyanothece sp. PCC 7425]
 gi|254790473|sp|B8HVF7|RECF_CYAP4 RecName: Full=DNA replication and repair protein recF
 gi|219864270|gb|ACL44609.1| DNA replication and repair protein RecF [Cyanothece sp. PCC 7425]
          Length = 377

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 168/372 (45%), Gaps = 12/372 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRNY    + F A  TI VG N  GK+N+LEA+  LS  R  R     ++
Sbjct: 1   MYLKSLQLRYFRNYREQVIDFAAPKTILVGQNAQGKSNLLEAVELLSTLRSHRSHRDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +     A +E   G  D+++ L +      R L +N   +R   +   HL    
Sbjct: 61  VLSGQENG-QIIATIERDSGPLDLTLNLRSNGR---RTLMVNSEPVRRHLDFLGHLNAVE 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
                  +  G   ERR +LD ++  ++P +   +  +  ++R RN  L     EG  D 
Sbjct: 117 FSSLDLDLVRGTPAERRNWLDNVLIQLEPFYAHLLQQYNHVLRQRNAFLKSYQREGSLDH 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QS 239
           +     + Q+A  G ++   R  ++  L+ L   + Q  +  +  L +    +   +   
Sbjct: 177 TELKLWDQQLASTGTRLTRRRQRLLVRLAPLATHWHQAISGKNEDLQVHYAPNVPLEGDE 236

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             A+ + + +KL      +     +L+GPHR ++ +   ++     +GS G+Q+ +++ +
Sbjct: 237 PEAIYQAFLEKLQQKAIAEQHQGTSLVGPHRDEVEL-IINQTPARQYGSQGQQRTLVLAL 295

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358
            LA  +LI    G  P+LLLD++ A LD  ++N L   + D   Q  +T T    FD+  
Sbjct: 296 KLAELKLIEEVIGEPPLLLLDDVLAELDLQRQNQLLETIQD-RFQTLITTTHLGAFDAQW 354

Query: 359 NETAKFMRISNH 370
            ++A+ + ++  
Sbjct: 355 LKSAQILEVAGG 366


>gi|317509429|ref|ZP_07967047.1| DNA replication and repair protein RecF [Segniliparus rugosus ATCC
           BAA-974]
 gi|316252258|gb|EFV11710.1| DNA replication and repair protein RecF [Segniliparus rugosus ATCC
           BAA-974]
          Length = 411

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 93/393 (23%), Positives = 159/393 (40%), Gaps = 32/393 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++    I +FR++    L      T+F+G NG GKTN++EA+  LS     R A  A +
Sbjct: 1   MRVSSFEIRDFRSWEHASLRLGEGSTLFLGRNGYGKTNLVEALGVLSSLSSHRGAQTAAM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+          + +     +++ L     ++ +  QIN V  R   E+   LR  +
Sbjct: 61  VRRGAAEALIAA---DVLNEGRKLTVGLRLAPGKATKA-QINGVN-RPTREVAGVLRTVF 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------- 174
             P    +  G   ERRRFLD  +    PR      DFER++R R  LL           
Sbjct: 116 FSPEDLALVRGEPGERRRFLDETLVVRQPRMAGVKADFERVLRQRATLLKSLGGGRPGAA 175

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                 +   + + Q A     + +AR+ ++ ALS ++       +       L     G
Sbjct: 176 RSEEARATLEAWDEQFASKAAALTVARISLVRALSPIVKRCYAAIDPSVDDAELRYRTAG 235

Query: 235 KFDQSFCALK-------------EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           + D++  A +             +    KL + R+ +    + L GPHR DL +      
Sbjct: 236 EDDEATAAAEDFPSAEISERHVADSITAKLAEIREEELRRGQCLAGPHRDDLELRIAGG- 294

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
           +  A  S GE     + + +A   L+    G  P+L+LD++ A LD  +R  +  +    
Sbjct: 295 LARAFVSHGEAWSYALALRVAAFELLRGE-GHDPVLVLDDVFAELDGPRREVVAGLARQA 353

Query: 342 GSQIFMTGTDKS-VFDSLNETAKFMRISNHQAL 373
             Q  +T  D + V + L      +R+   Q +
Sbjct: 354 E-QTLITAADPATVPEGLVARVVPVRLGEAQGM 385


>gi|257062757|ref|YP_003142429.1| recF protein [Slackia heliotrinireducens DSM 20476]
 gi|256790410|gb|ACV21080.1| recF protein [Slackia heliotrinireducens DSM 20476]
          Length = 376

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/367 (23%), Positives = 155/367 (42%), Gaps = 22/367 (5%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
            I+I+   + +FRNY + RL      TIF+G NG+GKTN+LEAI  L+    FR A   +
Sbjct: 2   DIRIESFQLRDFRNYETFRLDGIGPLTIFIGPNGIGKTNVLEAIQLLTATPSFRHAHTQE 61

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R  + +   +  +   +  + D+ I L      + +   IN       D     L   
Sbjct: 62  LIRWDAEN---SLLKAHMVSDVRDLEIGLAIGP--TGKTYSINGKKHSGQDV-QTTLPSV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P    +  G    RR  LD +   +   HR    D+ +LM+ +N LL +G     + 
Sbjct: 116 VFSPDDMLLLKGSQSYRRDELDAVGCQLSKNHRILKRDYLKLMKHKNALLKDGVTGP-YI 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL----------- 232
            S+   +     ++ + RV +   +++ + E     +    +L +               
Sbjct: 175 ESVNDLIVPTATQLYLYRVALFKNIAARMAEVYATISAGGERLEMRYIPSWHPMEVSKDV 234

Query: 233 --DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             D  FD     +     + L      +    R L+GPH   ++     +  ++ +GS G
Sbjct: 235 IEDVPFDLGKQEISTRLEEALHQRAVEEYERGRGLVGPHADKIMFYLNGRNASL-YGSQG 293

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +Q+ + +   +A   LI    G  P+LLLD++++ LD  +R AL  ++     Q F+T T
Sbjct: 294 QQRSISLAWKIAEVGLIEEILGQKPVLLLDDVASELDAARRGALVELL-HRDIQTFITTT 352

Query: 351 DKSVFDS 357
           D   F+S
Sbjct: 353 DIGTFES 359


>gi|294055474|ref|YP_003549132.1| DNA replication and repair protein RecF [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614807|gb|ADE54962.1| DNA replication and repair protein RecF [Coraliomargarita
           akajimensis DSM 45221]
          Length = 360

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 88/366 (24%), Positives = 156/366 (42%), Gaps = 14/366 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ K L + +FRN +   L   A     +G NG GK+N+LEA+  ++  R FR    + +
Sbjct: 1   MRFKELRVQDFRNVSFAELDLSADRNFLLGPNGQGKSNLLEALGLVTALRSFRTQQMSAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G    F+    ++          +LE     + R + ++   I  + +      +  
Sbjct: 61  PRQGGSGGFAAVYVLQ---HELRGETELEIHSGAAGRRVLLDGEAIGRLGDFIGRFPVVP 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L      I  G   ERRRFLD  + AID  +   + D+ + +  RNRLL  G  D+ +  
Sbjct: 118 LSSGDLMILRGSPAERRRFLDLSLSAIDADYYLALRDYHKGVAERNRLLKRGGRDAEF-D 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + EA++A   V+++  RV  +  L + ++E            ++      +         
Sbjct: 177 AFEAEIARHAVRLSAKRVSGMARLEATLVEVYAAIAESDEGPAVAYRPGEEL-----GTV 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +   L   RK D +   T  GPHR D  +          + S G+Q+ + V + +A A
Sbjct: 232 EHFKAMLERNRKRDQVLGSTQKGPHRDDFSLSLSTGGAK-EYASDGQQRGLCVALRIAQA 290

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           +L       AP+LL D++   LD  ++   +R   D   Q+  +GT+  + D     A+ 
Sbjct: 291 KLFQQALNVAPVLLADDVLGELDPHRKAGFWRACPD-DWQLIASGTE--LPDGAESWAQ- 346

Query: 365 MRISNH 370
            R+ + 
Sbjct: 347 WRVESG 352


>gi|54292967|ref|YP_125382.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str.
           Lens]
 gi|53752799|emb|CAH14233.1| RecF recombinational DNA repair ATPase [Legionella pneumophila str.
           Lens]
          Length = 353

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/369 (20%), Positives = 149/369 (40%), Gaps = 20/369 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + I  FRN AS  L+ +       G NG GKT++LEA+  LS    FR      +
Sbjct: 1   MILSEVRIHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVTPI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G     + FA        + IS++    D      +++N+       +L   L    
Sbjct: 61  ISYGQNQ-LNVFAHA---YDESTISVQKSITDGTQ---IKLNNQFCCTTSQLAYALPCQV 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +   + +I       RR  LD  +F +   + +   D++R++  RN LL        +  
Sbjct: 114 IYSDIFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHFI- 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+++L  +++ AR +          + +   +   I  ++  +       +   ++
Sbjct: 173 PWDQQLSQLANQLDKARNDYFLQWQPKFYQVLS--DLTDISCTVEYYKGWDRKNAGQNME 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E     L      D     T  GPH++DLI+      +     S G+QK++L+ + LA  
Sbjct: 231 E----LLQKSFDSDRNKLYTQYGPHQADLIISTEQYRVKHTL-SRGQQKIILIALKLAQG 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           +L+        + L+D+++A LD+  +  L + +  +  Q  +T   + + +D L   + 
Sbjct: 286 QLL----DKDCLYLIDDLAAELDDYHQRNLIKYLAQLKGQFVITNLINNNNYDILPIDSG 341

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 342 LFEVNCGAI 350


>gi|257452988|ref|ZP_05618287.1| RECF protein [Fusobacterium sp. 3_1_5R]
 gi|317059528|ref|ZP_07924013.1| RECF protein [Fusobacterium sp. 3_1_5R]
 gi|313685204|gb|EFS22039.1| RECF protein [Fusobacterium sp. 3_1_5R]
          Length = 364

 Score =  251 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 171/370 (46%), Gaps = 14/370 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + ++  RN  +  ++  +   +F G NG GKT+ILEAI F + G  FR    +++
Sbjct: 1   MKVLSIQLNHVRNLKNQEIIISSPIQVFYGKNGQGKTSILEAIYFAATGLSFRTKHSSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +   +    +       +S+ +E       +        I  + E   +L + +
Sbjct: 61  IRYTKNTLSCSLG-YQDQFSKKSLSVSIE----NEKKQFFFLGKKISQM-EFYGNLNVIY 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F+DR +  I+  + +++  F  L++ RN+ L E  + +    
Sbjct: 115 YIPEDVMLINGSPSVRRLFMDREISQINVFYLQQLKKFSHLLKIRNKYLKEKLYQNEEFL 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDGKFDQSFCA 242
             E +  E G  +   R   +  +SS I    Q       +L L    F++ + D +   
Sbjct: 175 IYEKEFVECGSYLIEQRNHYLQLMSSFIKNIYQNLFDKEKELQLQYKTFIEFQNDVTLSK 234

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           ++EE+ K++   ++ +     +++GPH+ +  +   ++     + S GE+K ++  + L+
Sbjct: 235 IQEEFWKEIKKKKEKEIQYGFSMVGPHKDEF-IFLLERQDAKLYASQGEKKSIIFSLKLS 293

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              ++S      PI+L+D+++++ DE++  ++ + + +   Q+F+T T++     L   A
Sbjct: 294 EIDILSKNKKEMPIVLIDDVTSYFDEERCYSVLQYLYEKKVQVFITSTER-----LKIEA 348

Query: 363 KFMRISNHQA 372
            + RI   + 
Sbjct: 349 DYYRIEKGEV 358


>gi|315654387|ref|ZP_07907295.1| recombination protein F [Mobiluncus curtisii ATCC 51333]
 gi|315491422|gb|EFU81039.1| recombination protein F [Mobiluncus curtisii ATCC 51333]
          Length = 413

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 159/396 (40%), Gaps = 38/396 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FR+Y  + L F A   +FVG NG GKTN+LEA+++L+     R  + A +
Sbjct: 1   MFVSDLALDWFRSYRQVILHFPAGTNVFVGANGQGKTNLLEALNYLAVLASHRIGTDAGL 60

Query: 65  TRIG---------SPSFFSTFARVEGMEGLADIS-----IKLETRDDRSVRCLQINDVVI 110
                        +       ARV     L D       +++E    R+ R + IN   +
Sbjct: 61  IFREIGDTVRSPATSRAGVIRARVHPGTDLTDPDASGELLEIELLAGRANRAM-INRHNV 119

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           R    L  HL      P   ++  G    RR FLDR+   + P     + ++ ++ R R 
Sbjct: 120 RPRS-LLGHLSTVLFAPEDLQLVQGDPATRRTFLDRIAIQLRPTLVGALGEYTKIARQRG 178

Query: 171 RLLT-----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--PH 223
             L          D    S  +  +    V++   R  +I+ L+  + +   +       
Sbjct: 179 AYLKDVAKRRAPIDEIQLSIWDDALVPAAVEVMRERARVIDQLAQFLPQVYARIAGHPAP 238

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAK-KLFDGRKMDSMS---------RRTLIGPHRSDL 273
           + L+    +    + S    +E YA  +L       +++            L+GPHR +L
Sbjct: 239 VGLTYADSVTKTLELSADEQREMYANPELLSSVFRQALARRRADEARRGVNLVGPHRDEL 298

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            +      +     S GE     + + LA   L+       P+LLLD++ A LDE +R A
Sbjct: 299 ELHLNGLPVK-GFASHGESWSYALSLRLAEFSLLRENFADTPVLLLDDVFAELDEQRRAA 357

Query: 334 LFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368
           L   +     Q+F+T  T   + ++L   A F R++
Sbjct: 358 LLWAIDQAD-QVFITSATGTEIPEAL--HAAFYRVT 390


>gi|58696694|ref|ZP_00372244.1| recF protein [Wolbachia endosymbiont of Drosophila simulans]
 gi|58698389|ref|ZP_00373302.1| recF protein [Wolbachia endosymbiont of Drosophila ananassae]
 gi|225630989|ref|YP_002727780.1| recombination protein F [Wolbachia sp. wRi]
 gi|58535102|gb|EAL59188.1| recF protein [Wolbachia endosymbiont of Drosophila ananassae]
 gi|58537136|gb|EAL60246.1| recF protein [Wolbachia endosymbiont of Drosophila simulans]
 gi|225592970|gb|ACN95989.1| recombination protein F [Wolbachia sp. wRi]
          Length = 365

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 109/371 (29%), Positives = 175/371 (47%), Gaps = 13/371 (3%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M     IK L +  FR++++  L  D    +  G NG+GKTNILEAIS L+   G ++A 
Sbjct: 1   MATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAK 60

Query: 61  YADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +++  R  +  +   +    GM+     SI +    D+  + +QI+         L K 
Sbjct: 61  ASEIQNRFSNEDWVVHYDFFNGMDFN---SIGIAKSFDK--KLIQIDGKTQSSYSSLYKI 115

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             + WL+P MD +      +R +FLDR+V   +  +    +   +  R R++LL E   D
Sbjct: 116 SNVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLD 175

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +W SS+E  MA   V I   R  ++  L   I +    E FP   L  +  L      +
Sbjct: 176 KNWLSSLENIMAVNAVSILRMRSSVLKTLQDTI-DNHSGELFPKASLKFSSQL------T 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                E +  +L + R+ DS++ R   G H  +  V    + + I   STGEQK++L+ I
Sbjct: 229 LDDTAEYFQNRLKENREKDSLTGRVTFGVHNDNFRVFCQKRNVPINLCSTGEQKLLLLSI 288

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L+  +        AP+LLLD+I +HLD+  R AL   V  I  Q ++T  ++  F+S  
Sbjct: 289 ILSSVKARCIHYNKAPLLLLDDIMSHLDKHYRKALIEEVLSIQCQTWITDVNQDNFNSYL 348

Query: 360 ETAKFMRISNH 370
            + KF  +SN 
Sbjct: 349 YSFKFFELSNE 359


>gi|326402805|ref|YP_004282886.1| DNA replication and repair protein RecF [Acidiphilium multivorum
           AIU301]
 gi|325049666|dbj|BAJ80004.1| DNA replication and repair protein RecF [Acidiphilium multivorum
           AIU301]
          Length = 379

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 186/368 (50%), Gaps = 9/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L +++FR+YA L            G NG GKTN+LEA+S L+PGRG R A  A++
Sbjct: 14  LRIESLRLTDFRSYARLDWQPGGMVVALAGPNGAGKTNLLEAVSLLAPGRGLRGARLAEL 73

Query: 65  TRI--GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R   G+   ++  AR++G EG   I   +E       R L ++                
Sbjct: 74  ARRAPGASGGWAVAARIDGPEGRFAIGTGIEAGQGERRRLL-LDGEPAAAARV-AARFSC 131

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P MDR+F+  +  RRRFLDR+V A++P H   +  FE     RNRL+  G +D  W
Sbjct: 132 LWLTPQMDRLFTEGASARRRFLDRLVLALEPGHASEVAAFEAASANRNRLIEAGGYDPLW 191

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            ++IE  MA     +  AR+ +I    + ++     + FP  +LSL   +  +       
Sbjct: 192 LATIEDSMARHAAALTAARLHVIER-LNALLAAGAADPFPAARLSLDCPIGAELAHRPAL 250

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             EE+ +  +   + + ++    + P R+DL +++    +  A  STG+Q+ +LV I LA
Sbjct: 251 AVEEWLRGRYAATRAEPVA---ALSPQRADLGLEHASSGLAAALASTGQQRAMLVAIVLA 307

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA L++ + G AP+LLLDE   HLD   R+AL   +   G+Q+F T T++    +L + A
Sbjct: 308 HAALVAISRGAAPVLLLDEPFVHLDAAHRSALGEALHRGGAQVFCTATERDQLAALGDAA 367

Query: 363 KFMRISNH 370
               +   
Sbjct: 368 -IWTVGEG 374


>gi|227876544|ref|ZP_03994655.1| recombination protein F [Mobiluncus mulieris ATCC 35243]
 gi|227842858|gb|EEJ53056.1| recombination protein F [Mobiluncus mulieris ATCC 35243]
          Length = 436

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 154/406 (37%), Gaps = 50/406 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FR+Y  L +  +    +F+G NG GKTN++EA+++L+     R  + A +
Sbjct: 1   MFVTNLALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAAL 60

Query: 65  TRIGSPS----FFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNK 118
              G+P          ARV         S  +++E    ++ R + +N   +R  D L  
Sbjct: 61  IFRGTPEETPHAGIIRARVSPGITPEPRSDLLEIEIVSGKANRAM-LNRHKVRPRD-LVG 118

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175
           HL      P    + SG    RR FLDR+   + P       D  + +R R   L +   
Sbjct: 119 HLSTVLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVAR 178

Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIK----- 225
                D       +  +  L  K+  +R ++   +  L   I   +  +  PH       
Sbjct: 179 RHEVLDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQ-APHESETNPN 237

Query: 226 -------------------LSLTGFLDGKFDQ----SFCALKEEYAKKLFDGRKMDSMSR 262
                              +S T  +D    Q        L+ +    L      ++   
Sbjct: 238 EATPTAENPVTARMTYRDNVSKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRG 297

Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
             L G HR DL     D  +   + S GE     + + LA   L+    G AP+LLLD++
Sbjct: 298 VNLCGTHRDDLEFCLHDFPVK-GYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDV 356

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRI 367
            A LD  +R A+   +     Q+++T      + + L   A+  R+
Sbjct: 357 FAELDSHRRAAILGAIEAAD-QVWITSAVGTELPEDL--HAQVFRV 399


>gi|306817505|ref|ZP_07451249.1| recombination protein F [Mobiluncus mulieris ATCC 35239]
 gi|304649729|gb|EFM47010.1| recombination protein F [Mobiluncus mulieris ATCC 35239]
          Length = 436

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 154/406 (37%), Gaps = 50/406 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FR+Y  L +  +    +F+G NG GKTN++EA+++L+     R  + A +
Sbjct: 1   MFVTNLALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAAL 60

Query: 65  TRIGSPS----FFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNK 118
              G+P          ARV         S  +++E    ++ R + +N   +R  D L  
Sbjct: 61  IFRGNPEETPHAGIIRARVSPGITPEPRSDLLEIEIVSGKANRAM-LNRHKVRPRD-LVG 118

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175
           HL      P    + SG    RR FLDR+   + P       D  + +R R   L +   
Sbjct: 119 HLSTVLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVAR 178

Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIK----- 225
                D       +  +  L  K+  +R ++   +  L   I   +  +  PH       
Sbjct: 179 RHEVLDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQ-APHESETNPN 237

Query: 226 -------------------LSLTGFLDGKFDQ----SFCALKEEYAKKLFDGRKMDSMSR 262
                              +S T  +D    Q        L+ +    L      ++   
Sbjct: 238 EATPTAENPATARMTYRDNISKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRG 297

Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
             L G HR DL     D  +   + S GE     + + LA   L+    G AP+LLLD++
Sbjct: 298 VNLCGTHRDDLEFCLHDFPVK-GYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDV 356

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRI 367
            A LD  +R A+   +     Q+++T      + + L   A+  R+
Sbjct: 357 FAELDSHRRAAILGAIEAAD-QVWITSAVGTELPEDL--HAQVFRV 399


>gi|269217832|ref|ZP_06161686.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269212767|gb|EEZ79107.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 453

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/392 (23%), Positives = 166/392 (42%), Gaps = 41/392 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +++FR+Y    +      T+ VG+NG GKTN++EA+ +LS     R +  A +
Sbjct: 1   MYLSDLALTDFRSYERAIVALKPGVTVLVGENGQGKTNLIEAVGYLSTLSSHRVSGDAAL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ +     ARV  +   A  ++++E    R+ R  +IN  ++R   E+   +R   
Sbjct: 61  VRQGATAA-VVQARV--VRSSAPTTVEVEIYSGRANRA-RINRGLVRPP-EIVGTVRSVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P    + SG    RR FLDR++  + PR      +++R  R R  LL          G
Sbjct: 116 FAPEDLELVSGDPAARRSFLDRIMVQLRPRMVAVKSEYDRAARQRAALLKSAGAARRGGG 175

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDG 234
             D++     + Q+A+LG +I  AR E++  L   + E+  K +      +++       
Sbjct: 176 SADAAALDVWDVQLAKLGARITAARAEIVARLRPRVDEFYAKVSGGRGPAEIAYRASAGR 235

Query: 235 KFDQSFCA-----LKEEYAKKLFDGRKMDSMS--------------RRTLIGPHRSDLIV 275
             +++  A       E   ++L D    +                    L+GPHR +L +
Sbjct: 236 LTERANGAGGGPDFDEGTQEELRDVELNEIRLISAMAERREEEIRRGVNLVGPHRDELEL 295

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS-NTTGFA-----PILLLDEISAHLDED 329
                     + S GE     + + LA  R++  + +G       P+L+LD++ A LD  
Sbjct: 296 AL-GTLPARGYASHGESWSYALALKLASWRVLCGDESGEWAEGGEPVLILDDVFAELDAR 354

Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           +R+ L RIV +    I        +   L   
Sbjct: 355 RRDRLARIVEEAEQAIVTAAVGSELPAELGGR 386


>gi|332359507|gb|EGJ37326.1| recombination protein F [Streptococcus sanguinis SK1056]
          Length = 287

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 57/265 (21%), Positives = 109/265 (41%), Gaps = 7/265 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FRNY    + F     +F+G N  GKTNILEAI FL+  R  R  S  D+
Sbjct: 1   MWLQSLKIKHFRNYQEADIDFHPGLNVFLGQNAQGKTNILEAIYFLALTRSHRTCSDKDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         V G+       + L+       R  ++N +    + +    + +  
Sbjct: 61  IHFTENDLL-----VSGILEKKTGKVPLDINLTPKGRITKVNHLKQSKLSDYIGTMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGSPSLRRKFIDIELGQIKPVYLSDLSNYNHVLKQRNSYLKANDKVDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + ++ Q+ + G ++   R++ +  L S   +     +    KL++         +    L
Sbjct: 176 TVLDEQLVDYGCRVIKHRLDFLQKLESFAQDKHWDISQNLEKLTVKYLSSIPLHK-IDNL 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGP 268
           +E Y   L + RK D   +  ++ P
Sbjct: 235 EETYRSSLLNSRKRDLFKKIQVLVP 259


>gi|148259598|ref|YP_001233725.1| recombination protein F [Acidiphilium cryptum JF-5]
 gi|146401279|gb|ABQ29806.1| SMC domain protein [Acidiphilium cryptum JF-5]
          Length = 379

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 116/368 (31%), Positives = 186/368 (50%), Gaps = 9/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L +++FR+YA L            G NG GKTN+LEA+S L+PGRG R A  A++
Sbjct: 14  LRIESLRLTDFRSYARLDWQPGGMVVALAGPNGAGKTNLLEAVSLLAPGRGLRGARLAEL 73

Query: 65  TRI--GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            R   G+   ++  AR++G EG   I   +E       R L ++                
Sbjct: 74  ARRAPGASGGWAVAARIDGPEGRFAIGTGIEAGQGERRRLL-LDGEPAAAARV-AARFSC 131

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P MDR+F+  +  RRRFLDR+V A++P H   +  FE     RNRL+  G +D  W
Sbjct: 132 LWLTPQMDRLFTEGASARRRFLDRLVLALEPGHASEVAAFEAASANRNRLIEAGGYDPLW 191

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            ++IE  MA     +  AR+ +I    + ++     + FP  +LSL   +  +       
Sbjct: 192 LATIEDSMARHAAALTAARLHVIER-LNALLAAGAADPFPAARLSLDCPIGAELAHRPAL 250

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             EE+ +  +   + + ++    + P R+DL +++    +  A  STG+Q+ +LV I LA
Sbjct: 251 AVEEWLRGRYAATRAEPVA---ALSPQRADLGLEHASSGLAAALASTGQQRAMLVAIVLA 307

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           HA L++ + G AP+LLLDE   HLD   R+AL   +   G+Q+F T T++    +L + A
Sbjct: 308 HAALVAISRGAAPVLLLDEPFVHLDAAHRSALGEALHRGGAQVFCTATERDQLAALGDAA 367

Query: 363 KFMRISNH 370
               +   
Sbjct: 368 -IWTVGEG 374


>gi|312865752|ref|ZP_07725974.1| DNA replication and repair protein RecF [Streptococcus downei
           F0415]
 gi|311098627|gb|EFQ56849.1| DNA replication and repair protein RecF [Streptococcus downei
           F0415]
          Length = 270

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 118/272 (43%), Gaps = 7/272 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ +++  FRNYA +   F +   IF+G N  GKTN LEAI FL+  R  R     ++
Sbjct: 1   MWLESISLKNFRNYAQMTAEFSSGLNIFLGQNAQGKTNFLEAIYFLALTRSHRTRLDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +         V G+       + LE       R  ++N +    + +   H+ +  
Sbjct: 61  INFQAKDL-----SVSGLLQRRGGKLPLEINLSDKGRTTKVNYLKQTKLSDYIGHMTVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+FLD  +  I P +   + ++  +++ RN  L      D  + 
Sbjct: 116 FAPEDLQLVKGAPGLRRKFLDIDLGQIKPVYLADLSNYNHVLKQRNAYLKTAQTIDKDYL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           + I+ Q+A+ G ++   R + +  L+    ++    +     L ++     KF  S   +
Sbjct: 176 AVIDEQLADFGSRVMEHRYQFVQDLTQEADKHHHVISNQLEHLKISYQSSVKFQDS-ANI 234

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
           K+ + ++L      DS  + T +GPHR DL  
Sbjct: 235 KQNFQEQLAKSFSRDSFKKNTGVGPHRDDLAF 266


>gi|225352382|ref|ZP_03743405.1| hypothetical protein BIFPSEUDO_03999 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156889|gb|EEG70258.1| hypothetical protein BIFPSEUDO_03999 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 419

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 135/367 (36%), Gaps = 18/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R++    L F     I  G NG+GKTNI+EAI  LS G   R +S   +
Sbjct: 1   MYISRLALDHYRSWEHCVLDFKPGINILQGANGLGKTNIVEAIEVLSTGSSHRASSSLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  S  +  A VE  E        +  R     R   I+    + + +L        
Sbjct: 61  IEKGCTSA-TIRANVEDGETQHTYEATIVARGANRAR---IDGGKSQYMRDLIGRTPSVS 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG----YFDS 180
             P   R+ +G    RR F+++    + P + + +  F  + + R  LL +       D 
Sbjct: 117 FTPEDQRLVAGDPATRRNFINQAASLLLPHYAQTLQQFTHVAKQRTALLKQLGDGTNLDP 176

Query: 181 SW--------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
            +              Q  +LG+++   R  +I+ L                + +L    
Sbjct: 177 QYGQQAVLSGLEIWTGQFIDLGMQLTRDRNNVISRLEEPFARIYASLAGDDERAALAYEP 236

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                  F     E ++        +    + LIGPHR DL +   D        S GE 
Sbjct: 237 SFDEVMLFDDPAAEISRHFQRIYPGEVARGQNLIGPHRDDLTLLLNDMN-AREFASNGEM 295

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
             + + + +A    +S      PI++LD++ A LDE +R  +         Q+ +T    
Sbjct: 296 WTMALALKMALYEAVSAHFESKPIVILDDVFAQLDEARRGQILDFAMR-QDQVLITVAAA 354

Query: 353 SVFDSLN 359
           S    ++
Sbjct: 355 SDIPRMD 361


>gi|297564536|ref|YP_003683508.1| DNA replication and repair protein RecF [Meiothermus silvanus DSM
           9946]
 gi|296848985|gb|ADH62000.1| DNA replication and repair protein RecF [Meiothermus silvanus DSM
           9946]
          Length = 347

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 142/349 (40%), Gaps = 21/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L  + FRN  S         T  VG N  GK+N+LEAI  L+ G   +    +D 
Sbjct: 1   MRLLRLRQTHFRNLKSPEFAPAPGLTTVVGGNAQGKSNLLEAIY-LALGGELKNG-LSDR 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              G    +  +A VE   GL+ +   + L        R L +N+     + E  +    
Sbjct: 59  IAFGQTEAW-VYAEVETQFGLSRLENKLSLPRPGTPGGRELWLNETSA-SLKEFAQLPGA 116

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             L P    +  G    RRRFLD ++     R+R  +  + R ++ RN LL  G      
Sbjct: 117 VLLGPDDLDLVLGPPEGRRRFLDLLLSRFSARYRAVLSAYSRALQQRNALLKMGGKG--- 173

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            +   A++A+ G +I   R  M+  LS L  E  ++     + L L              
Sbjct: 174 LAVWNAELAKYGTEILSLRRRMLGKLSPLARESYRELAPGELHLELV----------ETT 223

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             +E+   L D  + D     T IGPHR DL +   D    +   S GE + + + + L 
Sbjct: 224 PPDEFLPALEDTVQQDLERGATSIGPHRDDLAMRL-DGRDALKFASRGEARSIALALRLG 282

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
             RL+      AP+LL+DE    LD  +R AL      +  Q  + G +
Sbjct: 283 EHRLLWQHYDEAPLLLVDEWHTELDPRRRGALLSYAQSLP-QAILAGLE 330


>gi|307699932|ref|ZP_07636983.1| putative DNA replication and repair protein RecF [Mobiluncus
           mulieris FB024-16]
 gi|307614970|gb|EFN94188.1| putative DNA replication and repair protein RecF [Mobiluncus
           mulieris FB024-16]
          Length = 436

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 90/406 (22%), Positives = 153/406 (37%), Gaps = 50/406 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FR+Y  L +  +    +F+G NG GKTN++EA+++L+     R  + A +
Sbjct: 1   MFVTNLALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAAL 60

Query: 65  TRIGSPS----FFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNK 118
              G+P          ARV         S  +++E    +  R + +N   +R  D L  
Sbjct: 61  IFRGNPEETPHAGIIRARVSPGITPEPRSDLLEIEIVSGKPNRAM-LNRHKVRPRD-LVG 118

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175
           HL      P    + SG    RR FLDR+   + P       D  + +R R   L +   
Sbjct: 119 HLSTVLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVAR 178

Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIK----- 225
                D       +  +  L  K+  +R ++   +  L   I   +  +  PH       
Sbjct: 179 RHEVLDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQ-APHESETNPN 237

Query: 226 -------------------LSLTGFLDGKFDQ----SFCALKEEYAKKLFDGRKMDSMSR 262
                              +S T  +D    Q        L+ +    L      ++   
Sbjct: 238 EATPTAENPVTARMTYRDNVSKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRG 297

Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
             L G HR DL     D  +   + S GE     + + LA   L+    G AP+LLLD++
Sbjct: 298 VNLCGTHRDDLEFCLHDFPVK-GYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDV 356

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRI 367
            A LD  +R A+   +     Q+++T      + + L   A+  R+
Sbjct: 357 FAELDSHRRAAILGAIEAAD-QVWITSAVGTELPEDL--HAQVFRV 399


>gi|312130769|ref|YP_003998109.1| DNA replication and repair protein recf [Leadbetterella byssophila
           DSM 17132]
 gi|311907315|gb|ADQ17756.1| DNA replication and repair protein RecF [Leadbetterella byssophila
           DSM 17132]
          Length = 354

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 142/360 (39%), Gaps = 23/360 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  FRNY      F       VG NG GKTN+L+A+ FL+  +   +   +  
Sbjct: 1   MYLQNLRLYNFRNYEERFFTFSPTLNCIVGKNGSGKTNLLDAVYFLALSKSSIQTQDSLS 60

Query: 65  TRIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
            R         F+ +EG     + I I L     ++V     N  V   + +      + 
Sbjct: 61  IRFEED-----FSSLEGAFSNQNIIGIHLLRNGKKTVTS---NHKVYEKLSDHIGKYPVV 112

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFD 179
            L P+        +  RR+  D ++  +DP + +  + + + +  RN LL     + Y D
Sbjct: 113 LLAPNDTDYIRDGAETRRKLFDGILSQVDPEYLQTYLKYNKTLDQRNSLLKQFAEQNYVD 172

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
               S     +  LG  I   R   I + S L  +     +    ++ +    D      
Sbjct: 173 KDLLSIYTESLLVLGKAIFEKRKSFIESFSPLFKDQYVHLSEGREQVEIQYSSDLW---- 228

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               +E + ++       D  ++RT +G H+ D +    D  +    GS G++K  ++ I
Sbjct: 229 ----EENFEEQFQKNLNRDLSAQRTTMGVHKDDFLF-LMDGVLVKKFGSQGQRKSFVMAI 283

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTGTDKSVFDSL 358
            LA  + +       PILLLD+I   LD+ +   L  ++ +    QIF+T         L
Sbjct: 284 KLAQFQCLELEKETKPILLLDDIFDKLDDRRILRLIEMMNSGAFGQIFLTDARPERTAEL 343


>gi|15603908|ref|NP_220423.1| recombination protein F [Rickettsia prowazekii str. Madrid E]
 gi|7388064|sp|Q9ZEB6|RECF_RICPR RecName: Full=DNA replication and repair protein recF
 gi|3860599|emb|CAA14500.1| RECF PROTEIN (recF) [Rickettsia prowazekii]
 gi|292571623|gb|ADE29538.1| DNA replication and repair protein RecF [Rickettsia prowazekii
           Rp22]
          Length = 360

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 117/361 (32%), Positives = 183/361 (50%), Gaps = 6/361 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  +RN+ +L L  D    I  G+NG GKTNILEAIS   PGRG R +   D+ +
Sbjct: 6   LHSLTLENYRNFKNLELKTDNTPIILTGENGSGKTNILEAISLFYPGRGLRSSKLTDICK 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S  +      ++   GLA++S  ++   +R  R  + N   I   +EL+K   + WL 
Sbjct: 66  T-SEDYCKVKTLLQSKLGLAELSTHIKRSSNR--RITEYNASKI-ANNELSKFTNMVWLT 121

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P M+ IF+  S +RR+FLDR+V+  D +H   +  +E  M  RN++L E   D++W   I
Sbjct: 122 PQMEGIFTSSSTDRRKFLDRIVYNFDTKHAALLNKYEYYMHERNKILAEDIRDNNWLKII 181

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA++   I   R++ I  +   I +   +  FP   LS+ G ++ K       +   
Sbjct: 182 EEKMADISNNIANNRLKTIRFIQQAIDDI--ENEFPKADLSIDGIIEQKILNVEGDIVNF 239

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
              +L+  R  D +  RT  G H+SD +V +  K I     STGEQK +L+ I LA    
Sbjct: 240 IITELYKTRSKDKLLGRTSFGIHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEINS 299

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
               T   PILLLDEI  HLD+ +R  L      +  Q+++T TD    ++    A+ ++
Sbjct: 300 TIKLTKITPILLLDEIFVHLDDKRRQYLMGFFNALNIQLWVTATDLDGIENFANKAQLIK 359

Query: 367 I 367
           +
Sbjct: 360 L 360


>gi|291455695|ref|ZP_06595085.1| RecF protein [Bifidobacterium breve DSM 20213]
 gi|291382623|gb|EFE90141.1| RecF protein [Bifidobacterium breve DSM 20213]
          Length = 385

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 136/354 (38%), Gaps = 15/354 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R+++ + + F     I VG NG+GKTN++EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWSQVVVDFVPGVNILVGKNGLGKTNLVEAVEVLSTGASHRASSMLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  +       V+           +  R     R   IN      + ++   +    
Sbjct: 61  IERGQTTATIRANVVDDDGQSTTYEASIHARGANRAR---INSGTSLYLRDIIGRIPSVS 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
             P   R+ SG    RR  L++    ++P + + +  F R+ + R  LL +    ++   
Sbjct: 118 FTPEDQRLVSGDPGARRTLLNQAGALLEPGYMQSLHQFTRIGKQRATLLKQLGASANTGQ 177

Query: 183 --------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         Q  E GV++   R  +I+ L+        +       +SLT     
Sbjct: 178 PVDAVLSGLEIWTGQFIEAGVELTRMRARVIDLLAEPFAALYAELTGNDDTVSLTYAPSF 237

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
                    +   ++        +      LIGP R DL ++  D        S GE   
Sbjct: 238 DEVLMQDDPRLSISEHFQRIYPGEVARGVNLIGPQRDDLTLNLADMP-AREFASNGEMWT 296

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           + + + +A  ++I    G  PI++LD++ A LD+++R  +         Q+ +T
Sbjct: 297 MALALKMALFQVIRQRLGLKPIVILDDVFAQLDDNRRTQILDFARR-QDQVLIT 349


>gi|261338544|ref|ZP_05966428.1| RecF protein [Bifidobacterium gallicum DSM 20093]
 gi|270276565|gb|EFA22419.1| RecF protein [Bifidobacterium gallicum DSM 20093]
          Length = 381

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/368 (21%), Positives = 141/368 (38%), Gaps = 18/368 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  FR++  + L F +  T+  G NG+GKTN++EAI  LS G   R +S   +
Sbjct: 1   MRITRLALDHFRSWNEVVLDFPSGITMLQGHNGLGKTNLVEAIEVLSTGSSHRTSSSLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +  +  A V+  +  A     +  +     R   IN      + ++   +    
Sbjct: 61  VQRGQQTA-TIRANVQHQDRTATYEATIRAKGANRAR---INSGSSLYLRDIVGQVPSVT 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------- 175
             P   R+ SG    RRRFLD+    +   + + + D + + R R  LL           
Sbjct: 117 FSPDDQRLVSGDPSARRRFLDQAGSQLVAGYAQLLQDVQHVGRQRAALLKSLGQHGEPVD 176

Query: 176 ---GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                   +       Q    GV +  AR +++  L+        +   P  +  LT   
Sbjct: 177 TVSRNAALASLEVWTGQFISAGVALTRARQQLVQRLAEPFSLVYSQLAGPAEQARLTYEP 236

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                 +        ++        ++     LIGP R DL V            S GE 
Sbjct: 237 SFDEVLTDADPAAALSRHFQRLYAGETSRGVNLIGPQRDDLSVQLNGMD-AHEFASNGEM 295

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
             + + + +A  RL++    + P+++LD++ A LDE +R  +     +   Q+ MT    
Sbjct: 296 WAISLALKMALTRLLAEYHAYNPVVILDDVFAQLDESRRGQILSFAAE-QDQVIMTVAAA 354

Query: 353 SVFDSLNE 360
           S    L  
Sbjct: 355 SDIPQLAG 362


>gi|269977744|ref|ZP_06184704.1| DNA replication and repair protein RecF [Mobiluncus mulieris 28-1]
 gi|269934048|gb|EEZ90622.1| DNA replication and repair protein RecF [Mobiluncus mulieris 28-1]
          Length = 436

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 153/406 (37%), Gaps = 50/406 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FR+Y  L +  +    +F+G NG GKTN++EA+++L+     R  + A +
Sbjct: 1   MFVTNLALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAAL 60

Query: 65  TRIGSPS----FFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNK 118
              G+P          ARV         S  +++E    +  R + +N   +R  D L  
Sbjct: 61  IFRGNPEETPHAGIIRARVSPGITPEPRSDLLEIEIVSGKPNRAM-LNRHKVRPRD-LVG 118

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175
           HL      P    + SG    RR FLDR+   + P       D  + +R R   L +   
Sbjct: 119 HLSTVLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVAR 178

Query: 176 --GYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIK----- 225
                D       +  +  L  K+  +R ++   +  L   I   +  +  PH       
Sbjct: 179 RHEVLDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQ-APHESETNPN 237

Query: 226 -------------------LSLTGFLDGKFDQ----SFCALKEEYAKKLFDGRKMDSMSR 262
                              +S T  +D    Q        L+ +    L      ++   
Sbjct: 238 EATPTAENPVTARMTYRDNVSKTLGIDASARQIMFADTSVLETQIRAALRSRHLDEARRG 297

Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
             L G HR D+     D  +   + S GE     + + LA   L+    G AP+LLLD++
Sbjct: 298 VNLCGTHRDDIEFCLHDFPVK-GYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDV 356

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRI 367
            A LD  +R A+   +     Q+++T      + + L   A+  R+
Sbjct: 357 FAELDSHRRAAILGAIEAAD-QVWITSAVGTELPEDL--HAQVFRV 399


>gi|329944738|ref|ZP_08292817.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328529874|gb|EGF56764.1| DNA replication and repair protein RecF [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 405

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/407 (20%), Positives = 152/407 (37%), Gaps = 44/407 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+Y +L L  +   + FVG NG GKTN++EAI +L+     R  +   +
Sbjct: 1   MYVSDLSLDDFRSYRNLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTAL 60

Query: 65  TRI---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            R    G         R   + G     +++E    ++ R  ++N    R  D L   LR
Sbjct: 61  VRRAVPGQSQPAGAVVRARAVHGERPSVLEIEIIAGKANRA-RLNRGSCRPRD-LLGVLR 118

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS- 180
                P    +       RR FLD +V  + P       + ++++  R  LL        
Sbjct: 119 TVVFAPEDLSLVRNEPGVRRGFLDDLVVTLRPGLAGVRAEHDKILAQRASLLKSARAARS 178

Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-----PHIKLSLT 229
                 S     + Q+A    ++  ARV+++  L   +    +  +         +L+  
Sbjct: 179 STASMLSTLEVWDTQLAAAAARLITARVDVVRRLRPWVASAYETVSGSSGERSRAQLAYR 238

Query: 230 GFL---------DGKFDQSFCALKEEYAKKLF----------DGRKMDSMSRRTLIGPHR 270
             L         D   + ++ A +E    +            +    +      L+G HR
Sbjct: 239 SSLLGHEGSPDPDPHDEAAWLAGEESLLDEAAVTTRLESAMGELHAREIDRGANLVGAHR 298

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-----PILLLDEISAH 325
            DL +            S GEQ  + + + LA   ++            P+L+LD++ A 
Sbjct: 299 DDLSLFLTGLP-ARGFASHGEQWSLALALRLASYDMLRTDVDAYGGDGEPVLILDDVFAS 357

Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
           LDE +R AL R+V      +     D  V   L       R+++ + 
Sbjct: 358 LDEQRRRALARMVAGAQQVLLTAAVDDDVPAEL--AGARYRVTDGEV 402


>gi|114565579|ref|YP_752733.1| DNA repair and genetic recombination protein [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|122319237|sp|Q0B0Z2|RECF_SYNWW RecName: Full=DNA replication and repair protein recF
 gi|114336514|gb|ABI67362.1| DNA replication and repair protein RecF [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 365

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 95/369 (25%), Positives = 160/369 (43%), Gaps = 13/369 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI    I +FRN   +         IF G+N  GKTNILEA+ +L+ G  FR      +
Sbjct: 1   MKILKFQIKDFRNLKKIEYQPSPGLNIFYGENAQGKTNILEALYYLATGNSFRSNKEKTL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S S     AR    E + D SI          +  +IN    R        LRI  
Sbjct: 61  ISYESSS-LQVQARYNHQERIIDSSITYGLDG----KVFRINKK--RASYNHTDRLRIIL 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G   +RR FLD ++  I   +  ++ ++ ++++ RN LL +   +S   +
Sbjct: 114 FSPDDLYLVKGAPYKRRFFLDFLLGQISNEYLFKLDNYRKILKKRNLLLKKEETNSRSFA 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS---FC 241
            I     +L  ++ I+R+ +IN L   I E   + N    +L +   L    D       
Sbjct: 174 IINDIFMDLAAQLLISRLNLINVLDEAIQEIYPQINNDGGQLKIRYALSFPVDSGKINLD 233

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            LK+   K++    + +   + TL+GPH  D+ + Y ++ +     S G+Q+ +++ + L
Sbjct: 234 ILKDSLKKQVESETEKEKKRKTTLLGPHLDDMHI-YLNEQMARLFASQGQQRNIVICLKL 292

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           A         GF PI LLDE+ A LD+ + N L + +     Q F+T      F+ ++  
Sbjct: 293 AEIMTFRKIKGFFPIFLLDEVLAELDDSRSNKLLKYLAQSPFQSFLTSVKLEKFEVMD-- 350

Query: 362 AKFMRISNH 370
           A    + + 
Sbjct: 351 ASIFLVKDG 359


>gi|83944866|ref|ZP_00957232.1| recF protein [Oceanicaulis alexandrii HTCC2633]
 gi|83851648|gb|EAP89503.1| recF protein [Oceanicaulis alexandrii HTCC2633]
          Length = 388

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 124/376 (32%), Positives = 196/376 (52%), Gaps = 12/376 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            +  L ++ FRNYA L L  DA+     G+NG GKTN++EA+SFL PGRG R A    V 
Sbjct: 12  AVTRLKLTGFRNYARLDLALDARPVALFGENGAGKTNLVEAVSFLGPGRGLRAAGADAVR 71

Query: 66  R---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           R    G    ++ +A     EG   ++   + ++  + R  +++        EL + + +
Sbjct: 72  RRTDQGVDPLWAVYAEAMTPEGPVSLATGADPQNP-TRRRTKLDGAAA-TQTELARLIPM 129

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYF 178
            WL P  DR+++G   +R RF DR+V A  P H      +E+ M+ R RLL      G  
Sbjct: 130 LWLTPREDRLWAGPRADRLRFFDRLVLAAAPDHASSASAYEKSMKERQRLLDRVAEGGRA 189

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D  W +++EA+MA  GV +  AR++ +  L   I +   +  FP   L+L G ++ K  +
Sbjct: 190 DPDWLNALEAEMAASGVALAAARLDALARLQDEI-DTRPESQFPKADLALDGAVEAKLAE 248

Query: 239 SFCALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
              A + E  +A +L   R  D  + R L GPHR++L   +  K+   +  STGEQK ++
Sbjct: 249 GLKAGEAEDWFADELQRVRPRDGAAGRALTGPHRTELDARHRAKSQPASDCSTGEQKSMV 308

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           +G+ LA A  I   +G  P+L+ DE  AHLD  +R+ L   V D+G Q FMTG +  +F+
Sbjct: 309 LGLALAQAAAIRRLSGRGPVLIFDEACAHLDAARRDGLAETVLDLGVQAFMTGVEPVLFE 368

Query: 357 SLNETAKFMRISNHQA 372
           +    A+ + + +  A
Sbjct: 369 AFGTGAQRVEVRDGSA 384


>gi|149200628|ref|ZP_01877631.1| recombination protein F [Lentisphaera araneosa HTCC2155]
 gi|149136277|gb|EDM24727.1| recombination protein F [Lentisphaera araneosa HTCC2155]
          Length = 364

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 167/371 (45%), Gaps = 13/371 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  FRNY  L L  +   ++F G NG GKT  LEA+ FLS  R  R +    + +
Sbjct: 4   ISRIQLKNFRNYPELELKLEPGISVFRGLNGQGKTAFLEALGFLSLLRSIRSSHTRHLKK 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S  FFS  A ++      ++ + +   D R    L ++   +    +    ++    +
Sbjct: 64  WESD-FFSLRACLD-RVTRPELDMSVYYGDKRQ---LSLDGNRVPTTSDFIGVVKSVAFM 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    I  G +  RR++LD ++  + P + + +  +++ ++ RN++L  G          
Sbjct: 119 PEDIEIVKGSASWRRQYLDILLSQLSPGYLQSLKHYQKALKSRNQVLKRGLNLDLELDVW 178

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +  + E G ++  AR+ ++  L+  +   V+K       L L         ++   L+  
Sbjct: 179 DDILIEHGCEVLEARLSLLPRLAESVSTLVEKMLKKDFLLELQY--KNSLAKNATDLRSV 236

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           Y ++L + R+ D + + T  GPHR DL+++   ++++  +GS G+ ++  + +  A   L
Sbjct: 237 YIERLLENRERDKLYKMTHQGPHRDDLLINLNGRSLS-NYGSEGQCRLSSLILKAAAVEL 295

Query: 307 ISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE-TAKF 364
           +         ILL+D++   LDE  R A  + V+  G Q+F+  TD  +   L +   K 
Sbjct: 296 LLPVEKPDCLILLIDDVLGELDEFSRRAFLKCVSR-GDQVFIACTD--IPAGLEDYEYKS 352

Query: 365 MRISNHQALCI 375
             +       +
Sbjct: 353 YEVKAGVISSV 363


>gi|88705398|ref|ZP_01103109.1| DNA replication and repair protein recF [Congregibacter litoralis
           KT71]
 gi|88700488|gb|EAQ97596.1| DNA replication and repair protein recF [Congregibacter litoralis
           KT71]
          Length = 352

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 127/347 (36%), Gaps = 16/347 (4%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS 89
            +  G NG GKT++LEA   L   R FR      +   G  S+     R     G   I 
Sbjct: 5   NVIYGVNGSGKTSLLEAAHILGTARSFRSGGAKSLISHGEESYVVRGERRSPTGGSMAIG 64

Query: 90  IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149
           ++ E     S+R         R V  L   L +  +      +  G    RRRFLD  VF
Sbjct: 65  VQREKAGAISLRLA---GEPSRSVSRLADELPLLLINSDSFDLLVGEPANRRRFLDWGVF 121

Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209
            ++   R     F+R +  RN LL     D S        +A    +++  R   + +L 
Sbjct: 122 HVEHELRDSRQRFQRALTQRNHLLRRAKLDPSELQVWTRDLAVHAERVSSGRERFLESLR 181

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
            +    + +       ++L          S       Y + L      D     T  GP 
Sbjct: 182 EVFEPLIAELAPEIGPVALVYRRGWDASSS-------YEEVLQRSLTSDQEQGFTQTGPQ 234

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           R+D+ V     +      S G+QK+++  + LA  +++++  G   + L+D++ + LD +
Sbjct: 235 RADIRVTVGGYSAAETL-SRGQQKLLVCALKLAQGQILASEQG-NVLYLIDDLPSELDAE 292

Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFDS----LNETAKFMRISNHQA 372
           +   + R +  +  Q  +T   +S   +             +   Q 
Sbjct: 293 RCERVCRTLAAMQVQTLITCVTRSAIPASWLGSESDVAMFHVKQGQV 339


>gi|52840259|ref|YP_094058.1| DNA recombination and repair protein ATPase RecF [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52627370|gb|AAU26111.1| DNA recombination and repair protein ATPase RecF [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 353

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 150/369 (40%), Gaps = 20/369 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + I  FRN AS  L+ +       G NG GKT++LEA+  LS    FR      +
Sbjct: 1   MILSEVRIHNFRNIASTSLILNPNFNCITGPNGGGKTSLLEALYMLSCAHSFRSREITPI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G     + FA        + IS++    D      +++N+       +L   L    
Sbjct: 61  ISYGQNQ-LNVFAHA---YDESTISVQKSITDGTQ---IKLNNQFCCTTSQLAYALPCQV 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +   + +I       RR  LD  +F +   + +   D++R++  RN LL        +  
Sbjct: 114 IYSDIFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYDHFI- 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+++L  +++ AR +          + +   +  +I  ++  +       +   ++
Sbjct: 173 PWDQQLSQLANQLDKARNDYFLQWQPKFYQVLS--DLTNISCTVEYYKGWDRKNAGQNME 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E     L      D     T  GPH++DLI+      +     S G+QK++L+ + LA  
Sbjct: 231 E----LLQKSFDSDRKKLYTQYGPHQADLIISTEQYRVKHTL-SRGQQKIILIALKLAQG 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAK 363
           +L+        + L+D+++A LD+  +  L + +T    Q  +T   + + +D L   + 
Sbjct: 286 QLL----DKDCLYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITNLINNNNYDILPIDSG 341

Query: 364 FMRISNHQA 372
              ++    
Sbjct: 342 LFEVNCGAI 350


>gi|269122839|ref|YP_003305416.1| DNA replication and repair protein RecF [Streptobacillus
           moniliformis DSM 12112]
 gi|268314165|gb|ACZ00539.1| DNA replication and repair protein RecF [Streptobacillus
           moniliformis DSM 12112]
          Length = 358

 Score =  248 bits (634), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 78/366 (21%), Positives = 148/366 (40%), Gaps = 17/366 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +  S FRN    R+       +  G+N  GKT+ +EAI F + GR FR     ++ +
Sbjct: 2   IKEIFFSGFRNLIDKRIKLSRGFNLIYGENAQGKTSFMEAIYFGATGRSFRTKKNNEMIK 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S      F +++     ++ SI L   + +  +    N   I+ VD +   L +S++ 
Sbjct: 62  YDSNDA-KIFVKLDN---TSNYSINLFKNEKKYFK----NGEKIKYVDYIGDILAVSFI- 112

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    +  G    RR F +  +  I+  +   ++D+E++++ RN++L +           
Sbjct: 113 PEDVELVMGNPSIRRGFFNYEISQINKEYLHLIVDYEKILKVRNKMLKDKKHKEELYLIY 172

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFCALK 244
             +  ++  KI   R E ++ L+  + +  +         KL    FL           K
Sbjct: 173 NEKYIDICAKILKIRKEYVDELNKYLDKNYKDLFNIEHNFKLIYENFLKIDDVSDIEENK 232

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +   K L      D     +  G H+ + I +   K     + S GE+K ++  + ++  
Sbjct: 233 KIIEKLLKSKEIYDIQVGYSNYGVHKDEYIFELNGKN-ARHYSSQGEKKSIVFILKISEI 291

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            LI       PI L+D+I++  D  ++N +     +   Q F+T T+      L    K 
Sbjct: 292 ELIEKKENKKPIFLMDDITSFFDNFRKNQIIHYFLEKEIQCFLTSTE-----DLKIVGKK 346

Query: 365 MRISNH 370
             +   
Sbjct: 347 FDVDRG 352


>gi|306823994|ref|ZP_07457368.1| recombination protein F [Bifidobacterium dentium ATCC 27679]
 gi|309801974|ref|ZP_07696088.1| DNA replication and repair protein RecF [Bifidobacterium dentium
           JCVIHMP022]
 gi|304552992|gb|EFM40905.1| recombination protein F [Bifidobacterium dentium ATCC 27679]
 gi|308221422|gb|EFO77720.1| DNA replication and repair protein RecF [Bifidobacterium dentium
           JCVIHMP022]
          Length = 396

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 131/356 (36%), Gaps = 18/356 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R++    L F+    I  G NG+GKTNI+EA+  LS G   R +S   +
Sbjct: 1   MHISRLALDHYRSWERCVLDFEPGVNILQGANGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  S  +  A VE         + +  R     R    N + +R   ++   +    
Sbjct: 61  IERGCASA-TIRANVEDDRNRHSYEVTIAARGANRARIDGGNSLYMR---DVIGKIPSVS 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P   R+ SG    RR F+++    + P +  R+  F  + + R  LL      G FD 
Sbjct: 117 FTPEDQRLVSGDPATRRNFINQAGALLIPHYMERLQQFTHVAKQRTALLKQLGDRGDFDP 176

Query: 181 SW--------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
            +              Q  ++G+ +   R  +I  LS               +  L    
Sbjct: 177 QYGRQAALSGLEIWTGQFIDIGMALTHDRATLIERLSEPFSRVYASLAGTDQQALLRYEP 236

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                  +     E ++        +    + LIGPHR DL +            S GE 
Sbjct: 237 SFDEVMLYDDPAAEISRHFQRIYPGEVARGQNLIGPHRDDLTLTLHGMP-AREFASNGEM 295

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
             + + + +A    +       PI++LD++ A LDE +R  +         Q+ +T
Sbjct: 296 WTMALALKMALYETVCADQQTKPIVILDDVFAQLDESRREQILDFARR-QDQVLIT 350


>gi|225621318|ref|YP_002722576.1| putative recombinational DNA repair ATPase [Brachyspira
           hyodysenteriae WA1]
 gi|225216138|gb|ACN84872.1| putative recombinational DNA repair ATPase (RecF pathway)
           [Brachyspira hyodysenteriae WA1]
          Length = 355

 Score =  248 bits (634), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 151/368 (41%), Gaps = 13/368 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRNY      F  +  +  G NG GKTNILEAI  L  G  FR     ++
Sbjct: 1   MILKELTLRSFRNYNENIFEFSDKINVLYGHNGCGKTNILEAIYMLGNGVSFRTRLDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+ ++F         E   +    +E    + ++ + I+   +    +L   +    
Sbjct: 61  VKNGNDNYFLRGVF---REDELNYDTNIEIAYQKKIKKVFIDKKEVSSRKDLIGRILYVI 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P+   +       RR + + ++  I   +   +I + +L++ RN  L       +   
Sbjct: 118 FLPNDTDLVIAEPKLRRDYFNMLISTISSEYLIALIKYNKLLKMRNICL---NTKPNEAY 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
              + +A+L + I     +    L   + E  +         ++      +        +
Sbjct: 175 IYNSDIAKLSLYIANENKKYSALLEEKMNEIYKNIFNDENPYAIKYQSTIED----ILNE 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EY KKL    +       T  G HR++    Y + +++    S GE+++  + + LA  
Sbjct: 231 NEYIKKLETTLQEQIRMHTTYFGIHRAEYQFFYKN-SLSKKFSSQGEKRMFTLIMKLASE 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           +++S     +PILL+D+    LD  +R+ +   +  +G Q+F+T T+K    +  E  K 
Sbjct: 290 KILSEYRKKSPILLIDDAMLELDNTRRDNILEYIKTLG-QVFITVTEKEKVKNF-ENGKV 347

Query: 365 MRISNHQA 372
             I N + 
Sbjct: 348 FDIPNIRV 355


>gi|300871522|ref|YP_003786395.1| DNA replication and repair protein RecF [Brachyspira pilosicoli
           95/1000]
 gi|300689223|gb|ADK31894.1| DNA replication and repair protein, RecF [Brachyspira pilosicoli
           95/1000]
          Length = 355

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/365 (23%), Positives = 151/365 (41%), Gaps = 13/365 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L +  FRNY      F     I  G NG GKTNILEAI  L  G  FR     ++
Sbjct: 1   MILKELTLRSFRNYNENTFEFSKHINILYGINGCGKTNILEAIYILGNGISFRTRLDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+ ++F      E      +    +E    +  + + IN   I     L   +    
Sbjct: 61  IKYGNDNYFLRGIFKEDD---LNYDTNIEIVYQKKTKKVFINKKEITSRKNLIGKILYVI 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P+   + +     RR + + ++ +I   +   +I + +L++ RN  LT    D+    
Sbjct: 118 FLPNDTDMVTSEPKLRRDYFNMLISSISNEYLLSLIKYNKLLKMRNIYLTTSPNDAH--- 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
                +A+L + I     +    L   + E  +          +      +      A +
Sbjct: 175 IYNEDIAKLSLYIANENKKYSMLLEEKMNEIYRTIFKNDNPYKIKYLSTIED----IANE 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            EY KKL    K     R T  G HR++    Y D +++    S GE++++ + + LA  
Sbjct: 231 NEYIKKLESTIKEQIKMRTTYFGIHRAEYQFFYKD-SLSRKFSSQGEKRMLTLIMKLASE 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           +++      +PILL+D+    LD  KR ++   +  +G Q+F+T T+K       E +K 
Sbjct: 290 KILYEYRKKSPILLIDDAMLELDNIKRESILEYIKTLG-QVFITVTEKEKLSKFEE-SKV 347

Query: 365 MRISN 369
             I N
Sbjct: 348 FDIVN 352


>gi|229496502|ref|ZP_04390216.1| RecF protein [Porphyromonas endodontalis ATCC 35406]
 gi|229316399|gb|EEN82318.1| RecF protein [Porphyromonas endodontalis ATCC 35406]
          Length = 372

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 93/373 (24%), Positives = 159/373 (42%), Gaps = 13/373 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  F++ A+    F  +   F G NG+GKTN+L+AI +LS  R          
Sbjct: 1   MVLEHLELVAFKSIATASCDFAPKLNCFFGGNGMGKTNLLDAIHYLSMARSHLNTVDRLA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            RIGS             EG     I L  R     + L  N  + + + E      +  
Sbjct: 61  IRIGSTEAI-LSGDYRANEGEETDRIALRLRMG-QAKALSRNGRLYKRLSEHIGRYPLVI 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P   R+  G S ERR +LDR++   D  +   +I ++R ++ RN LL   + D    S
Sbjct: 119 ISPQDYRLIRGGSDERRNWLDRLLSQHDALYLDLLIRYDRALQQRNTLLKSDFQDEMLLS 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +E QMA  GV+I   R E +   +    +  Q+      +     +L      +    +
Sbjct: 179 IVEEQMALTGVEIAQKRAEFVRDFTPTFNQLYQEICGDKSECVTLNYL-----TATAPNR 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E + + L   R+ +  +  T  G H+ DL +    + +    GS G+ K  L  +     
Sbjct: 234 ELFTQDLRQRRREERATGYTTYGIHKDDLEM-LLGENLMRKIGSEGQNKTFLTALKFTEY 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDSL----N 359
            L++N     PILLLD++   LD ++   +  IV+  I  QIF+T T++   D +    +
Sbjct: 293 NLLANKLQCRPILLLDDLFDKLDAERVERIIGIVSRPIFGQIFITDTNRKYLDDIIEAQH 352

Query: 360 ETAKFMRISNHQA 372
           E+     + +   
Sbjct: 353 ESFHLYAVDHGNI 365


>gi|182414266|ref|YP_001819332.1| DNA replication and repair protein RecF [Opitutus terrae PB90-1]
 gi|259563666|sp|B1ZSD3|RECF_OPITP RecName: Full=DNA replication and repair protein recF
 gi|177841480|gb|ACB75732.1| DNA replication and repair protein RecF [Opitutus terrae PB90-1]
          Length = 366

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 146/367 (39%), Gaps = 11/367 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L +  FRN     L F  +    VG NG GKTN+LEA  FL+  R FR      +
Sbjct: 1   MRLRHLTLRHFRNVGFAALAFSGRQQFLVGLNGQGKTNLLEAAGFLTALRSFRTTDNKLL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +   +        G   ++IKL     R  + L  +   +  + +         
Sbjct: 61  IQHGQHTGAISSELTHEQLGDTKLTIKL----RRDGKELWSDATRVTRLADHLGRFPTVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  +  G    RRR+LD  + ++D  + R +  + R +  RN LL  G    +   
Sbjct: 117 FSSQDLHLVRGAPALRRRWLDLTLASMDAGYLRALQTYSRALADRNALLKRGNAADAELD 176

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + E Q+A   V +   R   +  L + +     +         +    +  FD       
Sbjct: 177 AFEQQLAPAAVALLATRTAALALLGAKLAVAYDRLCAGDAAEKVGLHYEPSFDGPST--- 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E +  +    R  D+  R TL+GPHR D               S G+Q+ +++ + LA A
Sbjct: 234 EAWLARFESSRGRDAQFRTTLVGPHRDDFSFVVRG-TAAKDFASEGQQRSLVLALRLAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
                 +G  P+LL D++   LD  +R   +  + D  SQI  TGT  S+ D+     + 
Sbjct: 293 EWGHEKSGTRPVLLADDVLGELDPLRRRRFWASI-DPESQILATGT--SLPDAELGEWQV 349

Query: 365 MRISNHQ 371
             + + +
Sbjct: 350 FEVKSGE 356


>gi|166157052|emb|CAO79509.1| DNA replication and repair protein RecF [uncultured candidate
           division WWE3 bacterium EJ0ADIGA11YD11]
          Length = 352

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 92/359 (25%), Positives = 168/359 (46%), Gaps = 22/359 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L ++  RN+  L L+FD   T+  GDNG GK+ ILEAI  LS G+        D+
Sbjct: 1   MKILNLKLTNLRNHTKLSLIFDNNVTLITGDNGSGKSTILEAIHILSVGKSKISKYDRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKL---ETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            + G   F S  A +E  +   ++ +++   E  ++ S++  +IN  V + +        
Sbjct: 61  IQYGKK-FCSINADIETKDDRFNMELQIIKNEDFENASIKKARIN-KVAKSIQYFAGIFN 118

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---EGYF 178
                P   ++ +G   ERR+++D  +  +D  ++R + D+ + +R RN+LL    +G+ 
Sbjct: 119 SVLFSPQDIQLITGSPSERRKYVDETLSQVDIEYKRSLNDYLKAVRQRNKLLEKINQGFG 178

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                     QM + G  I   R +M   +  +++E  +  N    KL L    +     
Sbjct: 179 GQGEIEFYTHQMLKNGEIIQRKREQMFADIKPILLETGKILNDKKTKLELNYKKN----- 233

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                 E   ++L + +  +  +  +L+GPHR D  + + D  +T   GS GEQ+  ++ 
Sbjct: 234 ------EISIERLNEFKSREIAAMTSLLGPHRDDFEIHFNDHNVT-NFGSRGEQRSCVLS 286

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           + +A    I       P+LLLD+I + LD+  + A+F ++    +Q  +T T    F +
Sbjct: 287 LKIAEISFIEKKKNDKPVLLLDDIFSELDKKHQTAVFDVIN--RNQTTITSTSMPDFPN 343


>gi|183980038|ref|YP_001848329.1| DNA replication and repair protein RecF [Mycobacterium marinum M]
 gi|226737814|sp|B2HI48|RECF_MYCMM RecName: Full=DNA replication and repair protein recF
 gi|183173364|gb|ACC38474.1| DNA replication and repair protein RecF [Mycobacterium marinum M]
          Length = 385

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 84/368 (22%), Positives = 148/368 (40%), Gaps = 22/368 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A   L      T+FVG NG GKTNI+EA+ + +     R  + A +
Sbjct: 1   MYVRHLGLRDFRSWAHADLELGPGRTVFVGPNGFGKTNIIEALWYSATLGSHRVGTDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       + ++ LE    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGADRAVISTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P    +  G   +RRR+LD +     P       D+++++R R  LL           
Sbjct: 117 FAPEDLALVRGDPADRRRYLDDLATLRRPTIAGVRADYDKVLRQRTALLKSVSGARFRGD 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--- 233
                     ++++A+ G ++  AR++++  L+  + +  Q         ++        
Sbjct: 177 RGALDTLDVWDSRLAQHGAELMAARIDLVRLLAPEVEKAYQLLAPESRSAAIAYRASMDA 236

Query: 234 ----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
                        L+E     L   R  +      L+GPHR DL +   D+       S 
Sbjct: 237 FVAADDAAPDRVTLEEGLLAALAARRDAELERGVCLVGPHRDDLELRLGDQPAK-GFASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE   + V      A  +    G  P+LLLD++ A LD  +R AL R V +   Q+ +T 
Sbjct: 296 GESWSMAVA-LRLAAFALLRADGSEPVLLLDDVFAELDAARRTALAR-VAESAEQVLVTA 353

Query: 350 TDKSVFDS 357
                  S
Sbjct: 354 AVLEDIPS 361


>gi|296125983|ref|YP_003633235.1| DNA replication and repair protein RecF [Brachyspira murdochii DSM
           12563]
 gi|296017799|gb|ADG71036.1| DNA replication and repair protein RecF [Brachyspira murdochii DSM
           12563]
          Length = 355

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/370 (21%), Positives = 157/370 (42%), Gaps = 17/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L I  FRNY      F  +  +  G NG GKTNILEA+  L  G  FR     ++
Sbjct: 1   MILKELTIRSFRNYNENVFEFSDKINVLYGHNGCGKTNILEAVYMLGNGVSFRTRLDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+ ++F         E   +    +E    + V+ + I+   +    +L   +    
Sbjct: 61  VKNGNDNYFLRGVF---REDELNYDTNIEIAYQKKVKKVFIDKKEVSSRKDLIGRILYVI 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P+   +       RR + + ++  I   +   +I + +L++ RN  L+    ++    
Sbjct: 118 FLPNDTDLVIAEPKLRRDYFNMLISTISLEYLTALIKYNKLLKMRNVCLSTKPNEAY--- 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFCA 242
              + +A+L + I     +  + L   + E  +          +     ++  F+++   
Sbjct: 175 IYNSDIAKLSIYIAGENKKYSSILEDKMNEIYKNIFNDENPYAIKYQSTIEDIFNEN--- 231

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
              EY KKL          R T  G HR++    Y + +++    S GE+++  + + LA
Sbjct: 232 ---EYVKKLESTLNEQIRMRTTYFGIHRAEYQFFYKE-SLSKKFSSQGEKRMFTLIMKLA 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
             +++S     +PILL+D+    LD  +R+ +   +  +G Q+F+T T+K    +  E  
Sbjct: 288 SEKILSEYRRKSPILLIDDAMLELDNTRRDNILEYIKTLG-QVFITVTEKEKVKNF-ENG 345

Query: 363 KFMRISNHQA 372
           K   I N + 
Sbjct: 346 KVFDIPNIRV 355


>gi|312134085|ref|YP_004001423.1| DNA replication and repair protein recf [Caldicellulosiruptor
           owensensis OL]
 gi|311774136|gb|ADQ03623.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           owensensis OL]
          Length = 353

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 140/349 (40%), Gaps = 21/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + I  FR+Y      F  +  + VG+N  GKT++LEA+ F   G+ F+ +   D+
Sbjct: 1   MIIKGIYIENFRSYKQSFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFK-SRDIDL 59

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               S  F     A VEG+E      +     D    + + IND  +  + EL    +  
Sbjct: 60  INFDSQYFKLEMVAEVEGVEYAVGCYV-----DRILEKRIMINDKKVNRLSELITLFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    +       RRRFLD  V  + P   +   +++R +  RN  L   Y      
Sbjct: 115 FFEPDTTELVKHQPKLRRRFLDMEVAKLYPYMTKVYQEYQRALLSRNAFLK-SYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q++ LG  I   R E+I  LSS               L L             + 
Sbjct: 174 DVYDVQLSHLGFLILSKRQEIIKKLSSEAQRIFGHVFENKSVLELEYLPSIA-----ASS 228

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +EEY  +L      D     T  G HR D  +    K   +   S G+ K+  V + LA 
Sbjct: 229 EEEYYTELKRWSDKDLNLGYTTRGIHRDDFEILIDGKP-ALDFASEGQIKLAAVSVVLAS 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           A L        P+L+LD++ + LD  K+  L + ++    Q F+T  + 
Sbjct: 288 AALY-----EKPVLILDDVFSELDSQKKKNLIKFLSQY--QSFVTSAED 329


>gi|171741732|ref|ZP_02917539.1| hypothetical protein BIFDEN_00823 [Bifidobacterium dentium ATCC
           27678]
 gi|283454962|ref|YP_003359526.1| Recombinational DNA repair ATPase RecF [Bifidobacterium dentium
           Bd1]
 gi|171277346|gb|EDT45007.1| hypothetical protein BIFDEN_00823 [Bifidobacterium dentium ATCC
           27678]
 gi|283101596|gb|ADB08702.1| Recombinational DNA repair ATPase RecF [Bifidobacterium dentium
           Bd1]
          Length = 396

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 131/356 (36%), Gaps = 18/356 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R++    L F+    I  G NG+GKTNI+EA+  LS G   R +S   +
Sbjct: 1   MYISRLALDHYRSWERCVLDFEPGVNILQGANGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G  S  +  A VE         + +  R     R    N + +R   ++   +    
Sbjct: 61  IERGCASA-TIRANVEDDRNRHSYEVTIAARGANRARIDGGNSLYMR---DVIGKIPSVS 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDS 180
             P   R+ SG    RR F+++    + P +  R+  F  + + R  LL      G FD 
Sbjct: 117 FTPEDQRLVSGDPATRRNFINQAGALLIPHYMERLQQFTHVAKQRTALLKQLGDRGDFDP 176

Query: 181 SW--------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
            +              Q  ++G+ +   R  +I  LS               +  L    
Sbjct: 177 QYGRQAALSGLEIWTGQFIDIGMALTHDRATLIERLSEPFSRVYASLAGIDQQALLHYEP 236

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                  +     E ++        +    + LIGPHR DL +            S GE 
Sbjct: 237 SFDEVMLYDDPAAEISRHFQRIYPGEVARGQNLIGPHRDDLTLTLHGMP-AREFASNGEM 295

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
             + + + +A    +       PI++LD++ A LDE +R  +         Q+ +T
Sbjct: 296 WTMALALKMALYETVCADQQTKPIVILDDVFAQLDESRREQILDFARR-QDQVLIT 350


>gi|270158400|ref|ZP_06187057.1| DNA replication and repair protein RecF [Legionella longbeachae
           D-4968]
 gi|289163356|ref|YP_003453494.1| RecF recombinational DNA repair ATPase [Legionella longbeachae
           NSW150]
 gi|269990425|gb|EEZ96679.1| DNA replication and repair protein RecF [Legionella longbeachae
           D-4968]
 gi|288856529|emb|CBJ10324.1| RecF recombinational DNA repair ATPase [Legionella longbeachae
           NSW150]
          Length = 356

 Score =  246 bits (628), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/359 (22%), Positives = 150/359 (41%), Gaps = 21/359 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I + RN  S  L  + +     G NG GKT++LEA   LS G  FR    A +
Sbjct: 1   MILTELKIHQLRNIISAHLELNPRFNFIFGSNGSGKTSVLEAFYLLSCGHSFRTREIAPI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                PS  + FAR    E    ISI+        V+   +N+       +L   L    
Sbjct: 61  ISHNQPS-MTVFARGRNQE---TISIQKSYSGATQVK---LNNQFCSTTSQLAYALPCQV 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
               + +I       RR  LD  +F +   +     +++R+++ RN LL +    + +  
Sbjct: 114 FYSDLFQIIDAGPSVRRNLLDWGLFHVKHNYFNLWKEYKRVLKQRNALLKKRAPFTHYI- 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+ +L  ++++ R E         +  + + +   +  +L  +          +L+
Sbjct: 173 PWDKQLDQLANQLHLLREEYFIQWEREFISVLSELS--ELGCTLKYYKGWDKKNLGKSLE 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E     L +    D     T  G H++D I++  +  +     S G+QK++L+ + LA A
Sbjct: 231 E----VLAENFDSDCHKLYTQHGAHQADFIIEVDNNKVK-HFISRGQQKIILIALKLAQA 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS--VFDSLNET 361
            L+S       + L+D+++A LDE  +  +   +     Q  +T T  S  +F++ +  
Sbjct: 286 NLVSE----DCLYLMDDLAAELDEAHQRRIMSHLFTRNGQYIITSTSNSNVLFENFSNN 340


>gi|302870735|ref|YP_003839371.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302573594|gb|ADL41385.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 353

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 86/349 (24%), Positives = 136/349 (38%), Gaps = 21/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + I  FR+Y      F  +  + VG+N  GKT++LEA+ F   G+ F+ +   D+
Sbjct: 1   MIIKSIYIENFRSYHQSFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFK-SRDVDL 59

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               S  F     A V G+E      +          + + IND  +  + EL    +  
Sbjct: 60  INFDSQYFKLEMVAEVSGVEYAVGCYVDRML-----EKGIMINDKKVNRLSELITLFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    +       RRRFLD  V  + P   +   ++++ +  RN  L   Y      
Sbjct: 115 FFEPDTTELVKRQPKLRRRFLDMEVAKLYPYMTKVYQEYQKALLSRNAFLK-SYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q++ LG  I   R E+I  LS                L L             + 
Sbjct: 174 DVYDVQLSHLGFLILSKRQEVIKKLSGEAQRIFGHVFENKSLLELEYLPSIA-----ASS 228

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +EEY  +L      D     T  G HR D  +    K   +   S G+ K+  V + LA 
Sbjct: 229 EEEYYTELKRCLIKDLNFGYTTRGVHRDDFEILIDGKP-ALDFASEGQIKLAAVSVVLAS 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           A L        P+L+LD++ + LD  KR  L   ++    Q F+T  + 
Sbjct: 288 AALY-----EKPVLILDDVFSELDCQKRKNLVMFLSQY--QSFVTSAED 329


>gi|307608753|emb|CBW98135.1| RecF recombinational DNA repair ATPase [Legionella pneumophila
           130b]
          Length = 353

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 142/344 (41%), Gaps = 19/344 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + I  FRN AS  L+ +       G NG GKT++LEA+  LS    FR      +
Sbjct: 1   MILSEVRIHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVTPI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G     + FA        + IS++    D      +++N+       +L   L    
Sbjct: 61  ISYGQNQ-LNVFAHA---YDESTISVQKSITDGTQ---IKLNNQFCCTTSQLAYALPCQV 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +   + +I       RR  LD  +F +   + +   D++R++  RN LL        +  
Sbjct: 114 IYSDIFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHFI- 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+++L  +++ AR +          + +   +  +I  ++  +       +   ++
Sbjct: 173 PWDQQLSQLANQLDKARNDYFLQWQPKFYQVLS--DLTNISCTIEYYKGWDRKNAGQNIE 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E     L      D     T  GPH++DLI++     +     S G+QK++L+ + LA  
Sbjct: 231 E----LLQKSFDSDKNKLYTQYGPHQADLIINIEQYRVKHTL-SRGQQKIILIALKLAQG 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           +L+        + L+D+++A LD+  +  L   +T    Q  +T
Sbjct: 286 QLL----DKDCLYLIDDLAAELDDYHQRNLIMHLTQQKGQFVIT 325


>gi|308234057|ref|ZP_07664794.1| DNA replication and repair protein RecF [Atopobium vaginae DSM
           15829]
 gi|328943454|ref|ZP_08240919.1| recombination protein F [Atopobium vaginae DSM 15829]
 gi|327491423|gb|EGF23197.1| recombination protein F [Atopobium vaginae DSM 15829]
          Length = 382

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 152/385 (39%), Gaps = 28/385 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L  + +RN+  LR+    + T+  G N VGKTN +EA+  ++ G  FR+     +  
Sbjct: 5   LHELTCTNWRNFQHLRISLGDKTTVLHGSNAVGKTNTIEAVQMITTGTSFRKPLLTQMIY 64

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               +     AR+  +      S++L        +    ND     V  L   +      
Sbjct: 65  HNENA-----ARLCAVYEDELHSVELACNISTHSKTYLKNDKKC-SVSTLCSVMPSVLFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P         +  RR  +D         +R+ +  F R +  RN +L     DS    + 
Sbjct: 119 PDDLLFVKQTARYRRSEIDGFGILAHKGYRKLIKTFSRALEQRNNILKLPLSDSDILHAW 178

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGF------LDGKFDQS 239
              +A     +  AR+++IN L S   E     +    +++           L+ K ++ 
Sbjct: 179 SVSLAHGSASVVAARLKLINHLYSKACEVYHTISPAEQLEIKYKSSIPLIKDLEHKVEEP 238

Query: 240 F------------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           +              L + Y        + +   + TLIGP R D+   Y +      + 
Sbjct: 239 YMYTPQSLSSLSKEDLVQSYLDAFSQKEQEELRRQVTLIGPQRDDIEF-YINGIPARTYA 297

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+Q+ +++   LA    I   TG  PILLLD++ + LDE +R A+   +   G Q  +
Sbjct: 298 SQGQQRSIVLAWKLAEVLFIKELTGQNPILLLDDVMSELDETRRLAIMEFIQQ-GIQTII 356

Query: 348 TGTDKSVF-DSLNETAKFMRISNHQ 371
           T T+ S F   + + A+ + ++  Q
Sbjct: 357 TTTNLSYFTKDILDRAQVVNMNEKQ 381


>gi|269954814|ref|YP_003324603.1| DNA replication and repair protein RecF [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269303495|gb|ACZ29045.1| DNA replication and repair protein RecF [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 485

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 134/334 (40%), Gaps = 36/334 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+YAS+ +  +     FVG NG GKTN++EAI +++     R ++ A +
Sbjct: 1   MYVSHLSLLDFRSYASVDVELEPGPNAFVGRNGQGKTNLVEAIGYVATLGSHRVSNDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+         V G       +++LE    R+ R       + R  D L   LR   
Sbjct: 61  VRAGAERAVVRTRIVRGDRAS---TVELEITPGRANRARINRGQLGRARDVL-GILRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P    +  G    RR+ LD++V  + PR    + D+ER+ R R+ LL           
Sbjct: 117 FAPEDLALVKGDPDGRRKLLDQLVVQLLPRAAGLLGDYERVNRQRSALLKSLRGQRAAGR 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDG 234
             D       +A+ A+LG +I   R++++ A+   +     + +    H +L     LD 
Sbjct: 177 SPDLGTLEVWDAKAAQLGGQILGMRLQLVQAMRPHVAAAYAQVSDADGHAELGYRSSLDA 236

Query: 235 KF---------------------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
                                    S   L+      +   R  +     +L+GPHR DL
Sbjct: 237 VLPDDAGASAGGAAILPADLADAPPSAVELETLLLAGMAAARSQEVDRGVSLVGPHRDDL 296

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
           ++          + S GE     + + LA  RL+
Sbjct: 297 VLTLGGLPAK-GYASHGESWSFALALRLASYRLL 329



 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 304 ARLISNTTGF--APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           AR  +   G    P+L+LD++ A LD  +R+ L  +V     Q+ +T        S
Sbjct: 413 ARFWTEELGHDAEPVLILDDVFAELDLRRRDRLAELVAPAR-QVLVTAAVPDDVPS 467


>gi|308235535|ref|ZP_07666272.1| DNA replication and repair protein recF [Gardnerella vaginalis ATCC
           14018]
 gi|311114016|ref|YP_003985237.1| recombination protein F [Gardnerella vaginalis ATCC 14019]
 gi|310945510|gb|ADP38214.1| recombination protein F [Gardnerella vaginalis ATCC 14019]
          Length = 422

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 156/393 (39%), Gaps = 31/393 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  FR+++S  L F  +  +  G NG+GKTNI+EAI  +S G   R +S   +
Sbjct: 1   MYVSRLVLDHFRSWSSCVLDFSPKINVLFGSNGLGKTNIVEAIEVISTGTSHRISSLMPL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               +         +      L + + +L      + R  +IN      + ++   ++  
Sbjct: 61  IECNNSCATIRLNTKNFDNNDLDETTYELTINSKGANRA-RINSGKSLYMKDIIGLVKSI 119

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--------- 174
              P    +       RR F+D+    + P + + + ++  + + R  LL          
Sbjct: 120 SFTPRDQNLIFSDPNIRRTFIDQAGALLIPNYLQVLQEYNHIAKQRAYLLKSLSNNNLAS 179

Query: 175 --EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
              GY   S       +  E G+ +   R ++IN L+ +  + V K +      S+    
Sbjct: 180 STNGYNPISDLEIWTGKFIESGIILTKNRKKIINLLNEIFPKIVDKLSRSSNFASIQY-- 237

Query: 233 DGKFDQSFCALKEEY--AKKLFDGRKM----DSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           +  F++     KE+Y     + +  +     +      LIGPHR D  +   +       
Sbjct: 238 NPSFEELEVESKEDYFPQTAISEHFQRIYAGEVARGYNLIGPHRDDFTILINNHPAK-EF 296

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE   + + + +A  + +       PI++LD++ + LDE +R  +     +   Q+F
Sbjct: 297 ASNGEAWTLALALKMALFKTLEEKNNQKPIVILDDVFSQLDESRRKQILEFAKE-QEQVF 355

Query: 347 MTGTDKSVF--------DSLNETAKFMRISNHQ 371
           +T    S          +S  + +K +  +N+Q
Sbjct: 356 ITVASLSDIPKDDNLSEESFIDISKIVEKNNNQ 388


>gi|307717720|ref|YP_003873252.1| DNA replication and repair protein RecF [Spirochaeta thermophila
           DSM 6192]
 gi|306531445|gb|ADN00979.1| DNA replication and repair protein RecF [Spirochaeta thermophila
           DSM 6192]
          Length = 363

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/361 (23%), Positives = 148/361 (40%), Gaps = 15/361 (4%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN  +  +   A   +FVG+NG GKTNILE +  L  G  FR      + R G  S   
Sbjct: 10  FRNIVTGTIDVGAPVVVFVGENGQGKTNILELVYLLCYGVSFRTRQNTFLIRRGRSSC-- 67

Query: 75  TFARVEGMEGLADISI-KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133
              RV G     +  I  +      + + + +N+  I    EL              +  
Sbjct: 68  ---RVHGEFRTEEGYILPILVEIGPTSKEIFLNEKKIANRKELFSISPCIVFAHDDIQFV 124

Query: 134 SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
            G  +  R+F+++++  +DP     +  + R++  RN  L E   D       + Q+A++
Sbjct: 125 VGSPLLHRQFMNQILTLVDPLFLDSLRTYNRILTSRNEALKEARED--LLDVYDDQLADI 182

Query: 194 GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
             +I + R  M++A SS++    ++  F      ++     K D      KEE  + L  
Sbjct: 183 AHQITVKRERMMDAFSSILRSTCEEFGFSGNVFDVSYRASLKGD-----GKEELMRILRS 237

Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
            R  D M   T  GPHR  L+       +   + STGE +++ + + +A    +  +TG 
Sbjct: 238 ERTQDLMVGFTRRGPHRDRLVFTMNGHPVP-DYASTGEIRLLSLLLRVAQTTYVRESTGK 296

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAKFMRISNHQA 372
            PILL D++   LD  KR  +  ++       F    ++ +   L    +    +   + 
Sbjct: 297 TPILLFDDVLLELDPLKRRRVVEMIPHGRQSFFTFLPEEPILQVLGGGRSLVYHVVEGRI 356

Query: 373 L 373
           +
Sbjct: 357 V 357


>gi|254444638|ref|ZP_05058114.1| hypothetical protein VDG1235_2879 [Verrucomicrobiae bacterium
           DG1235]
 gi|198258946|gb|EDY83254.1| hypothetical protein VDG1235_2879 [Verrucomicrobiae bacterium
           DG1235]
          Length = 358

 Score =  245 bits (625), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 81/366 (22%), Positives = 144/366 (39%), Gaps = 13/366 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K K + +S +RN    RL  DA     +G NG GKTN+LEAI +++  R FR A   ++
Sbjct: 1   MKFKAIGVSNYRNIKLARLNLDADRVFLLGRNGQGKTNLLEAIGYVTSLRAFR-ARENEI 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         +E  E       +      R  + + ++   +R   +         
Sbjct: 60  LLGPESGQAEIVYEIEHEEFEDS---EARVLIKRKGKEVSLDGEAVRRASDFVGRFPAVT 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L      I  G    RRRF+D  +  ID  +   +  +++ ++ RN LL  G        
Sbjct: 117 LSSEDLNIVRGSPGGRRRFIDTFLCGIDREYYVALQRYQKCVQERNALLKRGSS-MELMR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             EA++    + +   R  +I+ L S+   + +  +     + +    +   D      +
Sbjct: 176 PFEAELIGPALAVIRKRDSVISELGSMASRFYETLSGSAEAIGVDYKPNAYPDD-----E 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           + Y   L   RK D +   T  GPHR D  +    ++ T    S G+Q+ + + +  A  
Sbjct: 231 DAYRAMLDRNRKRDEIMHSTSKGPHRDDFELTLNGRSAT-DFASDGQQRSIALSLAFATI 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
                  G  P LL+D++   LD  +R   +  + D   Q+  TGT+     S  +    
Sbjct: 290 AYWRERFGVCPALLIDDVLGELDPVRRERFWNAL-DESIQLIATGTELPDAAS-GKEWLV 347

Query: 365 MRISNH 370
            R+ + 
Sbjct: 348 YRVEDG 353


>gi|295837754|ref|ZP_06824687.1| RecF protein [Streptomyces sp. SPB74]
 gi|295826659|gb|EFG64967.1| RecF protein [Streptomyces sp. SPB74]
          Length = 300

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 78/307 (25%), Positives = 124/307 (40%), Gaps = 19/307 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y    +      T FVG NG GKTN++EA+ +L+     R AS A +
Sbjct: 1   MHVTHLSLADFRSYERAEVSLGPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+   F   A     +      ++LE    R+ R        +R  D L   +R   
Sbjct: 61  VRAGAERAFVRAAV---TQDERSQLVELEINPGRANRARINRSSQVRPRDVL-GIVRTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ RN LL           
Sbjct: 117 FAPEDLALVKGDPGERRRFLDELLTARQPRMAGVRSDYERVLKQRNTLLKSAALARRHGG 176

Query: 178 --FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI---MEYVQKENFPHIKLSLTGFL 232
              D S     +  +A  G ++   R ++I AL  L+    E +     P + L      
Sbjct: 177 RTLDLSTLDIWDQHLARAGAELLAQRTDLIAALQPLVDKSYEQLAPGGGPAL-LEYRPSA 235

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
            G   Q       +    L + RK +     TL+GPHR   ++          + S GE 
Sbjct: 236 PGT-AQGREEFSAQLLAALGEMRKQEIERGVTLVGPHRD-DLLLKLGDLPAKGYASHGES 293

Query: 293 KVVLVGI 299
               + +
Sbjct: 294 WSYALAL 300


>gi|269216528|ref|ZP_06160382.1| DNA replication and repair protein RecF [Slackia exigua ATCC
           700122]
 gi|269130057|gb|EEZ61139.1| DNA replication and repair protein RecF [Slackia exigua ATCC
           700122]
          Length = 379

 Score =  244 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 88/376 (23%), Positives = 154/376 (40%), Gaps = 23/376 (6%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
            + I+  ++  FRNY S  +      T+F+G N  GK+N+LEAI  ++    FR A   +
Sbjct: 2   DLHIQSFSLRNFRNYRSFEMDDVDPLTMFIGPNATGKSNVLEAIQLVTSATTFRGAKSRE 61

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R G        A V+         ++   R   S R + +N       D L   L   
Sbjct: 62  MIRWGCDC-----ADVKAHIVSDTRDLETSMRLTESSRSIAVNGKRKHGQDVL-GILPSV 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
              P   ++ +G    RR  LD +   +   HR    D+ ++++ +N L+  G  + S  
Sbjct: 116 MFSPEDMQLVTGAHGFRRDALDALGSQLSRTHRVLRRDYLKIVKHKNSLMKNG-IEGSLL 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ----- 238
            S+   +   G  + + R  + + L+  I     + +     L +      +        
Sbjct: 175 DSVNDMLVTSGAHLYVYRAALFDNLAVRIARAYSEISSSGETLDMRYVPSWEDADLYSDR 234

Query: 239 --------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                             + LF+    +S   R L+GPH   L   Y D      +GS G
Sbjct: 235 MRDAAHFFEVEECSNRMRRSLFNRHDEESRRGRALVGPHADKL-FFYLDGRNATLYGSQG 293

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           +++ + +   +A   LI +  G  PILLLD++++ LDE +R AL  ++     Q F+T T
Sbjct: 294 QRRSIALSWKIAEIGLIEDVLGLKPILLLDDVASELDESRREALIGLLHH-DIQTFITTT 352

Query: 351 DKSVFD-SLNETAKFM 365
           D   F+ S+   A+ +
Sbjct: 353 DMGAFEKSIANGARVV 368


>gi|258545194|ref|ZP_05705428.1| DNA replication and repair protein RecF [Cardiobacterium hominis
           ATCC 15826]
 gi|258519546|gb|EEV88405.1| DNA replication and repair protein RecF [Cardiobacterium hominis
           ATCC 15826]
          Length = 359

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 157/369 (42%), Gaps = 18/369 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ L +   RN A+  L    + T+  G NG GKT +LEAI  L  G+ FR      + 
Sbjct: 3   RLRQLRLDNHRNLATTTLELHPRCTLISGKNGSGKTALLEAIYLLGRGKSFRENQTRHLI 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
               P +    AR+E       + I+   R+ R    L+++   ++ +  L     +  L
Sbjct: 63  AHDQP-YLRLIARIEKNGEEHLLGIEKSAREHR----LRLDGQNLKNLAALAALTPVQIL 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
                         RRR+LD  ++  DP        +   ++ RN  L + +  ++  + 
Sbjct: 118 NSDNFAHIDQGPEHRRRYLDYGLYYHDPAFLPAWQRYNYALKNRNAALRQNWR-AADLAP 176

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
               + E G +I+  R   +  L   +  Y   E   + ++ +         Q   AL  
Sbjct: 177 WNHILGETGTQIDTLRRAYLEKLEDTLNTYHA-ELGGYERIHIHYQRGWPAGQPLAAL-- 233

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
                L    + D++ + T  G HR+DL   + D      H S G+QK ++  + LA  R
Sbjct: 234 -----LDANNERDALLKHTRDGIHRADLRY-HADGRDIAHHYSRGQQKTLICALILAQTR 287

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT--DKSVFDSLNETAK 363
           LI+  +G API+L+D+I+A LD  ++  L + + D  SQ+++T    D  +  +L +  +
Sbjct: 288 LITADSGTAPIILIDDIAAELDRARQEKLLQFLADSDSQLYITHIDGDLELPPALADH-Q 346

Query: 364 FMRISNHQA 372
            + I     
Sbjct: 347 RLHIEAGHI 355


>gi|33866581|ref|NP_898140.1| recombination protein F [Synechococcus sp. WH 8102]
 gi|51316337|sp|Q7U4L8|RECF_SYNPX RecName: Full=DNA replication and repair protein recF
 gi|33633359|emb|CAE08564.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. WH 8102]
          Length = 365

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 82/360 (22%), Positives = 157/360 (43%), Gaps = 17/360 (4%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN+  L L       + +G NG+GK+N+LEA+  L   R  R +   D+ +  +P    
Sbjct: 4   FRNHRKLSLELTQPRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWEAPRALL 63

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
                +G +      ++LE R     +  +    + R +D L   LR          +  
Sbjct: 64  RAGLDDGDQ------LELELRRQGGRQARRNGKTLDRQLD-LIGPLRCIGFSALDLELVR 116

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-----YFDSSWCSSIEAQ 189
           G    RR++LDR+V  ++P +   +  + RL+R R++L   G         +   + + Q
Sbjct: 117 GEPALRRQWLDRVVLQLEPVYADLLGRYNRLLRQRSQLWRRGAQTNPNQRDALLDAFDVQ 176

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEY 247
           MA +  +I+  R   +  L  +   +    +    +L L      + D  ++    +   
Sbjct: 177 MALVSTRIHRRRQRALRRLEPIARRWQSHLSAGSEELELHYQPGSRLDAEEAEEPWRLAI 236

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
            ++L   R  +       +GPHR ++ +           GS+G+Q+ +++G+ LA   L+
Sbjct: 237 EEQLRLQRPEEERLGSCRVGPHRDEVSLQLGGTP-ARRFGSSGQQRSLVLGLKLAELELV 295

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMR 366
           +   G AP+LLLD++ A LD  +++ L   V     Q  ++ T  S F+    E ++ ++
Sbjct: 296 TQLFGEAPLLLLDDVLAELDPTRQHLLLEAVGQ-EHQCLVSATHLSGFEGGWREHSQILK 354


>gi|291297364|ref|YP_003508762.1| DNA replication and repair protein RecF [Meiothermus ruber DSM
           1279]
 gi|290472323|gb|ADD29742.1| DNA replication and repair protein RecF [Meiothermus ruber DSM
           1279]
          Length = 357

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 91/379 (24%), Positives = 149/379 (39%), Gaps = 39/379 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L    FRN  +         T  VG N  GKTN+LEAI  L+ G   R    A+ 
Sbjct: 1   MRLLRLRQKNFRNLFTPVFAPGPGLTTVVGGNAQGKTNLLEAIE-LALGGELRNG-LAER 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G    +   A +E   G + + +KL     R  R  ++N+     + EL +      
Sbjct: 59  IAFGQGEAW-LHAEIETQFGNSRLEVKL----SREGREHRLNEAPA-SLRELAQLPGAVL 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
           L P    +  G   ERRRFLD ++     R+R  +  + R ++ RN +L  G        
Sbjct: 113 LGPDDLELVLGPPEERRRFLDVLLSRFSARYRSMLSQYNRALQQRNAVLKSGFRPTSRGQ 172

Query: 177 -----YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                    +       ++ + G +I   R  M+  L+ L  E  ++     + L L+  
Sbjct: 173 GEGAPSSTRASIGIWNHELVKYGSEILSLRRRMLAKLTPLAREAYRELAPGELNLELSET 232

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
            D           + + + L D  + D     T +GPHR DL++   +       GS GE
Sbjct: 233 TD----------PDRFLQTLEDNLQDDLQRGATSVGPHRDDLVI-LLEGREAARFGSRGE 281

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
            + + + + LA  RL+      AP+LL+DE  + LD  +R AL      +  Q  + G +
Sbjct: 282 CRSIALALRLAEHRLLWQHYEEAPLLLVDEWHSELDNRRRGALLAYAQSLP-QAILAGLE 340

Query: 352 KSVFDSLNETAKFMRISNH 370
                    T   + I   
Sbjct: 341 T------PGTGAVIEIEAG 353


>gi|312792286|ref|YP_004025209.1| DNA replication and repair protein recf [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179426|gb|ADQ39596.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 353

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 148/349 (42%), Gaps = 21/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK + I  FR+Y      F  +  + VG+N  GKT++LEA+ F   G+ F+ +   D 
Sbjct: 1   MKIKRIYIENFRSYKQRFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFK-SRDVDA 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVDELNKHLRIS 123
                    S + ++E    + DI   +    DR+  + + +ND  IR + EL    +  
Sbjct: 60  INFD-----SYYFKLEMSAEVGDIEYSILCYVDRALEKRIMLNDKKIRRLSELISLFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    +       RRRFLD  V  + P   +   +++R +  RN  L   Y      
Sbjct: 115 FFEPDTTELIKHQPSTRRRFLDMEVAKLYPYMTKVYSEYQRALLSRNAFLK-SYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+++LG  I   R E+I+ LS    +           L L             + 
Sbjct: 174 DVYDMQISQLGFLIFQKRQEVIDKLSIEAQKIFSLVFENKSLLELRYMPSIN-----ASS 228

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +EEY K+L      D     T  G HR D  +    K   I   S G+ K+  V + LA 
Sbjct: 229 EEEYYKELKKCLLKDLNLGYTTKGVHRDDFGILIDGKP-AIDFASEGQIKLAAVSVVLAT 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + L +      P+L+LD++ + LD+ KR  L + ++    Q F+T  + 
Sbjct: 288 SLLYTE-----PVLILDDVFSELDKFKRKNLVKFISQY--QSFVTSAED 329


>gi|294786217|ref|ZP_06751471.1| RecF protein [Parascardovia denticolens F0305]
 gi|315225747|ref|ZP_07867535.1| recombination protein F [Parascardovia denticolens DSM 10105]
 gi|294485050|gb|EFG32684.1| RecF protein [Parascardovia denticolens F0305]
 gi|315119879|gb|EFT83011.1| recombination protein F [Parascardovia denticolens DSM 10105]
          Length = 405

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 69/381 (18%), Positives = 140/381 (36%), Gaps = 35/381 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L + ++R++    +       + VG NG+GKTNI+EA+ FLS G   R  S   +
Sbjct: 1   MYLSRLILDDYRSWPHCLVDLTPGVNVLVGHNGLGKTNIMEAVEFLSTGGSHRVRSSQPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ +  +  A++   +     ++ +     R     +IN+     + ++   ++   
Sbjct: 61  VRQGAKAA-TIRAKLVQGDRETQYTVTI---PGRGANRAKINNGPSLYMRDIVGQVKTVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY------- 177
             P    + S     RRRFLD     +   +   +  +  + + R  LL           
Sbjct: 117 FTPEDQLLISMDPGHRRRFLDDAGVQLIRPYYDLLQRYAHVAKQRVALLKRISQARFGSS 176

Query: 178 -------FDSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKL 226
                   D+S+        Q+  LG+ +   R ++   LS +     +         +L
Sbjct: 177 PFGGLDDLDASYASLEVWTGQLINLGLALTQERADICQRLSPIFNRTYRHLAGDGQEAQL 236

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKM----DSMSRRTLIGPHRSDLIVDYCDKAI 282
                 +   +      +E    ++    +     +    R LIGPHR D+         
Sbjct: 237 RYLPSFEEFLEIDPAGDQEVVFDRISQHFQRLFEGELAQGRNLIGPHRDDVEFVLNGFP- 295

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISN-------TTGFAPILLLDEISAHLDEDKRNALF 335
              + S GE   + + + ++  +L+           G  PIL+LD++ + LD  +R  + 
Sbjct: 296 ARDYASNGELWTLSLALKMSLFQLLLRVEQEGEEGEGGEPILILDDVFSQLDNSRREKIV 355

Query: 336 RIVTDIGSQIFMTGTDKSVFD 356
              +    Q+ +T        
Sbjct: 356 DFASK-QGQVLITAASPDDLP 375


>gi|222528061|ref|YP_002571943.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222454908|gb|ACM59170.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 353

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 88/349 (25%), Positives = 148/349 (42%), Gaps = 21/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK + +  FR Y      F  +  + VG+N  GKT++LEA+ F   G+ F+ +   D 
Sbjct: 1   MKIKSIYVENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCMCGKSFK-SRDIDA 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123
                    S + ++E +  + D    +    D+++ + + IND  I+ + EL    +  
Sbjct: 60  INFD-----SFYFKLEMLAEVGDTEYNVFCYVDKALDKRIMINDKKIKKLSELISTFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    +       RRRFLD  V  + P   +   ++ R +  RN  L   Y      
Sbjct: 115 FFEPDATELIKHQPKLRRRFLDMEVTKLYPYMTKVYSEYHRALLSRNAFLK-SYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+++LG  I   R E+IN LS    +           L L             + 
Sbjct: 174 DVYDMQISQLGFLIFQKRQEVINKLSIEAQKIFSLVFENKSMLELKYMPSIA-----AST 228

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           ++EY K++    + D     T  G HR D  +   DK   I   S G+ K+  V + LA 
Sbjct: 229 EKEYYKEIKKNIEKDLSLGYTTKGVHRDDFEI-LIDKKPAINFASEGQIKLAAVSVVLAT 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + L S      P+L+LD++ + LD  KR  L + ++    Q F+T  + 
Sbjct: 288 SLLYSE-----PVLILDDVFSELDSFKRKNLVKFISQY--QSFVTSAED 329


>gi|311063462|ref|YP_003970187.1| RecF DNA replication and repair protein [Bifidobacterium bifidum
           PRL2010]
 gi|310865781|gb|ADP35150.1| RecF DNA replication and repair protein [Bifidobacterium bifidum
           PRL2010]
          Length = 437

 Score =  243 bits (621), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 79/412 (19%), Positives = 146/412 (35%), Gaps = 62/412 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R++    L       I  G NG+GKTNI+EAI  LS G   R +S   +
Sbjct: 1   MYISRLALDHYRSWNHCVLDLTPGINILQGANGLGKTNIVEAIEVLSTGLSHRTSSSVPL 60

Query: 65  TRIGSPSFFSTFARVEG-------------------------MEGLADISIKLETRDDRS 99
            + G     +  A +E                          +      +++       +
Sbjct: 61  VQRG-EHAATIRANIESVTDPEPADDGVNASADAVYISDMKPVRQTQTTTLEATIAARGA 119

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
            R  +IN    R + E+   L      P   ++ +G    RR F++++   + P +  R+
Sbjct: 120 NRA-RINGGQSRYLREILGTLPTVSFTPEDQQLVAGDPAVRRSFINQVASLLIPGYANRL 178

Query: 160 IDFERLMRGRNRLLTE--------GYFDSSW--CSSIEAQMAELGVKINIARVEMINALS 209
             F  + + R  LL +           D++         Q  E GV ++  R  +I  L+
Sbjct: 179 QSFTHVAKQRAALLKQLGQWQRAGSPIDAALSGLEIWTGQFIEAGVALSRDRQRIIAELN 238

Query: 210 SLIMEYVQK-------------------ENFPHIKLSLT-GFLDGKFDQSFCALKEEYAK 249
                   +                   +      +     F +    Q+   L  ++ +
Sbjct: 239 KSFGPLYARLAGVAGDLPSNAEIQDAAQDGGEQAAVEYVPSFDEILGTQAPEPLISQHFQ 298

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           +++ G   +      LIGP R DL+V            S GE   + + + +A  R +  
Sbjct: 299 RIYPG---EVSRGVNLIGPQRDDLLVTLNGMP-AREFASNGEMWTLALALKMAQYRALCE 354

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
                P+++LD++ A LDE +R  + R       Q+ +T   +S    L   
Sbjct: 355 YFDTRPVVILDDVFAQLDESRRTEILRFAAA-QDQVLITAAAESDIPILPAN 405


>gi|325969852|ref|YP_004246043.1| DNA replication and repair protein RecF [Spirochaeta sp. Buddy]
 gi|324025090|gb|ADY11849.1| DNA replication and repair protein RecF [Spirochaeta sp. Buddy]
          Length = 360

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 82/371 (22%), Positives = 152/371 (40%), Gaps = 14/371 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++   L  ++FRN  S R+  D +    +G NG GKTN+LEA+  L  G  FR     ++
Sbjct: 1   MRFIELWTNQFRNLVSQRIPVDNRQVFLIGPNGQGKTNLLEALYALCYGSSFRTNQLKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           T  G  +F      +   +     ++ LE +D +  R + ++D  ++   EL  ++    
Sbjct: 61  TVHGEKAFKIVGIYL--GDDQIRHTLMLEWKDGK--RSMSLDDREVKDRKELIYNIPCIV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                     G   +RRRF D+ +   +P     +  +  ++R RN+ + +G F      
Sbjct: 117 FSHDDIFFIKGEPEQRRRFFDQTMSMYNPLFFDDLRRYRLVLRQRNQAIKDGRF--ELLD 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+A+ G+ I   R   +     +     +  +   +++ +          + CA +
Sbjct: 175 LYDLQLAKYGLAIQSERTRAVYEFDQIFPSMYKDVSQNTMEVHIEYHPSW----NDCATE 230

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           EE  + L   R  D     T  G HR   +V    +  +   GSTG+ ++  +    A  
Sbjct: 231 EEIVEYLARTRSRDISMLTTTSGIHRDRFLVMEAGQPFSQT-GSTGQLRLASLIFRTAQM 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT-DKSVFDSLNET-A 362
                 TG  P++L+D++   LD +KR     ++     Q F T   ++  F  L E  A
Sbjct: 290 AFFQKKTGKEPLILVDDVLLELDFEKREHFLHLMQTY-CQAFFTFLPEEHYFSELAEEGA 348

Query: 363 KFMRISNHQAL 373
               +   + L
Sbjct: 349 LLYTVQEGRFL 359


>gi|312877902|ref|ZP_07737847.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795328|gb|EFR11712.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 353

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 149/349 (42%), Gaps = 21/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK + I  FR+Y      F  +  + VG+N  GKT++LEA+ F   G+ F+ +   D 
Sbjct: 1   MKIKRIYIENFRSYKQRFFEFKDKINLIVGNNASGKTSLLEALYFCMCGKSFK-SRDVDA 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123
                    S + ++E    + DI   +    DR++ + + IND  I+ + EL    +  
Sbjct: 60  INFD-----SYYFKLEMSAEVGDIEYSILCYVDRALDKRIMINDKKIKRLSELISLFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    +       RRRFLD  V  + P   +   +++R +  RN  L   Y      
Sbjct: 115 FYEPDTTELVKHQPSTRRRFLDMEVAKLYPYMTKVYSEYQRALLSRNAFLK-SYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+++LG  I   R E+I+ LS    +           L L             + 
Sbjct: 174 DVYDMQISQLGFLIFQKRQEVIDKLSIEAQKIFSLVFENKSLLELRYMPSIN-----ASS 228

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +EEY K+L      D     T  G HR D  +    K   I   S G+ K+  V + LA 
Sbjct: 229 EEEYYKELKKCLLKDLNLGYTTKGVHRDDFGILIDGKP-AIDFASEGQIKLAAVSVVLAT 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + L +      P+L+LD++ + LD+ KR  L + ++    Q F+T  + 
Sbjct: 288 SLLYTE-----PVLILDDVFSELDKFKRKNLVKFISQY--QSFVTSAED 329


>gi|86606664|ref|YP_475427.1| recombination protein F [Synechococcus sp. JA-3-3Ab]
 gi|97181044|sp|Q2JQG8|RECF_SYNJA RecName: Full=DNA replication and repair protein recF
 gi|86555206|gb|ABD00164.1| DNA replication and repair protein RecF [Synechococcus sp.
           JA-3-3Ab]
          Length = 380

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 90/376 (23%), Positives = 174/376 (46%), Gaps = 14/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++FL++  FRNY   ++ F+A  TI VG+N  GKTN+LEA+  L+  R  R     ++
Sbjct: 1   MYLRFLHLWHFRNYRDQKISFEAPKTILVGENAQGKTNLLEAVELLATLRSRRAGRDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+       A VE +    +++++L ++  RS   L++N   +R   +    +    
Sbjct: 61  VQQGAEKA-RIAATVERLGVAHELAMELRSQGGRS---LRVNGQGLRRQSDFLGQVSAVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
                  +  G    RR +LD ++  ++P +   +  + ++++ RN LL +    +    
Sbjct: 117 FSSLDLELVRGAPEARRTWLDGVLLQLEPAYLGLVEQYRQILKQRNALLKQDPLAAGDKV 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              +  +AQ+A LG +I   R  ++  L  L   + Q  +     LSLT           
Sbjct: 177 PQMAFWDAQLATLGSRILRRRARLLQRLEPLAARWHQAISGGRETLSLTYRPQVPLPDPQ 236

Query: 241 CA---LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                ++ ++   +      +     +L+GPHR ++ +   D     A+GS G+Q+ +++
Sbjct: 237 ADPKVVQAQFLAAIRAKAAAEQALGTSLVGPHRDEVELGI-DGVAARAYGSQGQQRTLVL 295

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD- 356
            + LA   LI    G  P+LLLD++ A LD  ++N L   + +   Q  +T T    FD 
Sbjct: 296 ALKLAELELIEQVKGDPPLLLLDDVLAELDLHRQNQLLEAIQE-RVQTLVTTTHLGSFDA 354

Query: 357 SLNETAKFMRISNHQA 372
           +  + A+ +++   Q 
Sbjct: 355 AWLQGAQILQVHQGQI 370


>gi|300934347|ref|ZP_07149603.1| recombination protein F [Corynebacterium resistens DSM 45100]
          Length = 452

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 88/399 (22%), Positives = 152/399 (38%), Gaps = 68/399 (17%)

Query: 29  HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP-SFFSTFARVEGMEGLAD 87
            +IF G NG GKTNI+EA+ +L+     R  S + + R G   +  S  A  +G E    
Sbjct: 1   MSIFSGPNGHGKTNIVEALGYLAHLGSHRVTSDSALVREGQKLASISATAVNDGRE---- 56

Query: 88  ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147
           +S  L  R   + R   IN   +R   ++   +R +   P    +  G   +RR FLD +
Sbjct: 57  LSTHLAIRASGANRAY-INRTAMRSPRDILGIVRTTLFSPEDLALIRGEPEQRRNFLDTI 115

Query: 148 VFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----------------------------- 178
           + A  PR      D+++ +R RN LL    F                             
Sbjct: 116 MLARYPRLAGVKADYDKALRQRNALLRNSSFVLRHLTESPSQASSNRSTDDSSEIKGAHS 175

Query: 179 ----------DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226
                       +     + Q+A LG +I  ARV++++ LS  + +  Q+         +
Sbjct: 176 RSSFLSDAESALATLDVWDGQLAALGGQIMSARVQIVHDLSPHVAKTYQRLAPESRPAHM 235

Query: 227 SLTGFLDGKFDQ-----------------SFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
           + T  +D +                    S    +    +   + R  +     TL+GPH
Sbjct: 236 AYTSTIDAQLADFGVQLGKSVPGEPTALLSPEVAEATLLRAFAEKRPHEIDRGTTLLGPH 295

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           R D+      +       S GE     + + L  A  +  + G  PI++LD++ A LD +
Sbjct: 296 RDDVTFTLGTQPAK-GFASHGESWSFALSLRLG-AYFMGRSDGTEPIVILDDVFAELDRN 353

Query: 330 KRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRI 367
           +R  L  ++ D   Q+ +T    + + + L   A    +
Sbjct: 354 RRRKLVDLLEDAE-QVLITAAVGEDIPEELRAKASIFDV 391


>gi|261854633|ref|YP_003261916.1| DNA replication and repair protein RecF [Halothiobacillus
           neapolitanus c2]
 gi|261835102|gb|ACX94869.1| DNA replication and repair protein RecF [Halothiobacillus
           neapolitanus c2]
          Length = 359

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 154/371 (41%), Gaps = 18/371 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            +  L+I++FRN         A   + VGDNG GKT++LEAI +LS  + FR  ++ D+ 
Sbjct: 5   HLTSLSITQFRNLTMTDCPLSAGFNLLVGDNGAGKTSVLEAIYYLSTLKSFRTQTHNDLI 64

Query: 66  -RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R           R    +   D  + LE   D+    L++    +        HL +  
Sbjct: 65  ARYPDRDRGCAVVRAGVHQDDHDFFMALERCKDQ--FRLRLGREEVPRASLFVAHLPVLA 122

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L    D +       RR+F+DRM F +          F R+++ RN  L  G        
Sbjct: 123 LHAQSDDLVLAGPEFRRKFIDRMAFYLFADFVPAYAQFARMLKQRNAALRTGQS----TE 178

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             +    + G ++N  RV  ++ L +++ +  +    P + + +      K         
Sbjct: 179 IWDPLFIQYGERLNEQRVAALDLLKTVLPQVFEAL-APQLSVDMQFHPGHKSGL------ 231

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            + ++ L   R+ D    +TLIGP R+D++    D A   +  S G+ KV    + LA A
Sbjct: 232 -DLSEALARNRERDREMGQTLIGPQRADILFTLNDYAFK-SFASRGQIKVFTAALTLATA 289

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            +     G   +LL D+  +  D    +AL   ++++G Q+F++  D+   D   +    
Sbjct: 290 HIWQAQRGKRAVLLFDDFMSEFDAHHSSALLHYLSNMGHQVFISAVDRQQIDFPFDA--V 347

Query: 365 MRISNHQALCI 375
            R+   Q   +
Sbjct: 348 FRLDAGQISAV 358


>gi|260885575|ref|ZP_05897039.1| RecF protein [Prevotella tannerae ATCC 51259]
 gi|260851611|gb|EEX71480.1| RecF protein [Prevotella tannerae ATCC 51259]
          Length = 342

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 79/350 (22%), Positives = 144/350 (41%), Gaps = 18/350 (5%)

Query: 29  HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADI 88
              FVGDNG+GKTN+L+AI +LS  +  R ++     + G  +F       +   G   I
Sbjct: 2   VNCFVGDNGMGKTNLLDAIYYLSFCKSARSSTDVTNVKHGEQAFMLQGLYDDDTGGEDKI 61

Query: 89  SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
           +I       + +R    N   I+   E    + +  + PS   + +G S  RRRF+D ++
Sbjct: 62  AIGYHEGRRKQLRR---NGKDIKRFAEHIGTIPLVMISPSDSELVTGGSDNRRRFMDTVI 118

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
              D  +   ++ +E+ +R RN LL  E   ++   S IE  M+     I   R   +  
Sbjct: 119 AQYDATYLEALMRYEKTLRQRNALLKKEEEPEADVISIIEDIMSRDAAIIYQGRKLFVET 178

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
            ++      ++  +   ++++     G         + E    L   R  + +   TL G
Sbjct: 179 FTAFFQGIYRELCYDPEQVNIVYESHGN--------RGELKPMLEQYRSRERLVGYTLHG 230

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS-NTTGFAPILLLDEISAHL 326
            H+ DL++      +     S G+ K   + + LA    +   ++   P+LLLD+I   L
Sbjct: 231 IHKDDLLLYINGYPVKQE-ASQGQTKTYFIALKLAQYVYLRTKSSLRQPLLLLDDIFDKL 289

Query: 327 DEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSLNE---TAKFMRISNHQA 372
           D  +   + R   +    QIF+T T K     + +     K   + + + 
Sbjct: 290 DAGRVEHIIRYAAEAQFGQIFITDTSKERLLPILQLQRNYKLFTVKDGEI 339


>gi|118615922|ref|YP_904254.1| recombination protein F [Mycobacterium ulcerans Agy99]
 gi|166220719|sp|A0PKB4|RECF_MYCUA RecName: Full=DNA replication and repair protein recF
 gi|118568032|gb|ABL02783.1| DNA replication and repair protein RecF [Mycobacterium ulcerans
           Agy99]
          Length = 385

 Score =  242 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 85/368 (23%), Positives = 149/368 (40%), Gaps = 22/368 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A   L      T+FVG NG GKTNI+EA+ + +     R  + A +
Sbjct: 1   MYVRHLGLRDFRSWAHADLELGPGRTVFVGPNGFGKTNIIEALWYSATLGSHRVGTDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       + ++ LE    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGADRAVISTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVIGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P    +  G   +RRR+LD +     P       D+++++R R  LL           
Sbjct: 117 FAPEDLALVRGDPADRRRYLDDLATLRRPTIAGVRADYDKVLRQRTALLKSVSGARFRGD 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--- 233
                     ++++A+ G ++  AR++++  L+  + +  Q         ++        
Sbjct: 177 RGALDTLDVWDSRLAQHGAELMAARIDLVRLLAPEVEKAYQLLAPESRSAAIAYRASMDA 236

Query: 234 ----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
                       AL+E     L   R  +      L+GPHR DL +   D+       S 
Sbjct: 237 FVAADDAAPDRVALEEGLLAALAARRDAELERGVCLVGPHRDDLELRLGDQPAK-GFASH 295

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           GE   + V      A  +    G  P+LLLD++ A LD  +R AL R V +   Q+ +T 
Sbjct: 296 GESWSMAVA-LRLAAFALLRADGSEPVLLLDDVFAELDAARRTALAR-VAESAEQVLVTA 353

Query: 350 TDKSVFDS 357
                  S
Sbjct: 354 AVLEDIPS 361


>gi|183602670|ref|ZP_02964034.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219682502|ref|YP_002468885.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|241190069|ref|YP_002967463.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241195475|ref|YP_002969030.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183218088|gb|EDT88735.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620152|gb|ACL28309.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248461|gb|ACS45401.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250029|gb|ACS46968.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|289177772|gb|ADC85018.1| RecF [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793056|gb|ADG32591.1| recombination protein RecF [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 475

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 78/389 (20%), Positives = 143/389 (36%), Gaps = 36/389 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  FR++ +  L F     I  G NG+GKTNI+EA+  LS G   R ++   +  
Sbjct: 4   VSRLALDHFRSWTNCVLDFKPGVNILEGPNGLGKTNIVEALEVLSTGSSHRASTSQPLVE 63

Query: 67  IGSPSFFSTFARVE--------GMEGLADISIKLETRDD-RSVRCLQINDVVIRVVDELN 117
            G P+  +  A +E          E + D +   E     R     +++      + ++ 
Sbjct: 64  QGFPAA-AIRANIEELSEDFENNTETIDDRTTTFELTIRVRGANRARVDGGPSLYMRDIV 122

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
             + +    P   R+  G    RR F+D+    +   +   +  F  + + R  LL +  
Sbjct: 123 GRVPLVAFTPDDQRLVWGDPAVRRSFIDQAASVLVRGYTDLLQRFTHIAKQRAALLKQIG 182

Query: 178 FDS-------------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--- 221
                           +      AQ  E G+++   R+ +I  L+      VQ+ +    
Sbjct: 183 AQEGVSVSEEARQMRMNGLEVWTAQFIETGLELTRQRMAVIGMLNEYFGTIVQELSDVDQ 242

Query: 222 -------PHI-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
                  P   +L LT   +         +K   ++        +      LIGP R D+
Sbjct: 243 TATLVYEPSFDELYLTQGAEAGEQGGPERVKAAISEHFQRIYTGEVARGVNLIGPQRDDV 302

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            ++         + S GE   + + + +A  RL+    G  PI++LD++ A LD  +R  
Sbjct: 303 SIELNGMP-AREYSSNGESWTLALALKMALYRLLERKAGERPIVVLDDVFAQLDPSRRAK 361

Query: 334 LFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +         Q+ +T         L   A
Sbjct: 362 IMEFALR-QDQVIITVAAAGDVPELPGDA 389


>gi|86610145|ref|YP_478907.1| recombination protein F [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|97181049|sp|Q2JIB8|RECF_SYNJB RecName: Full=DNA replication and repair protein recF
 gi|86558687|gb|ABD03644.1| DNA replication and repair protein RecF [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 380

 Score =  242 bits (618), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 87/377 (23%), Positives = 169/377 (44%), Gaps = 14/377 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY    + FDA  TI VG+N  GKTN+LEA+  L+  R  R +   ++
Sbjct: 1   MYLRSLHLRHFRNYRDQEITFDAPKTILVGENAQGKTNLLEAVELLATLRSRRASRDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A VE +    ++ ++L +   RS   L+++  V+R   +    +    
Sbjct: 61  V-YQEERQAQIAATVERLGVAHELVMELRSSGRRS---LKVDGQVLRRQADFLGQVNAVV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS---- 180
                  +  G    RR +LD ++  ++P +   +  + +++R RN LL +    +    
Sbjct: 117 FSSLDLELVRGGPEARRNWLDGVLLQLEPAYLGLVEQYRQILRQRNALLKQDPAAAGDKF 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---D 237
           S     +AQ+A  G +I   R  ++  L  L   + +  +     L+LT           
Sbjct: 177 SQMDFWDAQLATTGSRIMRRRARLLQRLEPLAAHWHRVISGGRETLTLTYRPQVPLPDPQ 236

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            S   ++ ++  ++      +     +L+GPHR ++ +   +     A+GS G+Q+ +++
Sbjct: 237 ASPEVIQAQFLAEIRAKAAAEHSLGSSLVGPHRDEVELCI-NGVAARAYGSQGQQRTLVL 295

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + LA   LI       P+LLLD++ A LD  ++N L   + +   Q  +T T    FD+
Sbjct: 296 ALKLAELELIEQVVRDPPLLLLDDVLAELDLHRQNQLLEAIQE-RVQTLVTTTHLGSFDA 354

Query: 358 -LNETAKFMRISNHQAL 373
              + A+ +++   Q  
Sbjct: 355 GWLKAAQILQVQGGQLF 371


>gi|315187337|gb|EFU21093.1| DNA replication and repair protein RecF [Spirochaeta thermophila
           DSM 6578]
          Length = 363

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 81/361 (22%), Positives = 146/361 (40%), Gaps = 15/361 (4%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN  +  +   A   +FVG+NG GKTNILE +  L  G  FR      +   G  S   
Sbjct: 10  FRNIVTGTIDVGAPVVVFVGENGQGKTNILELVYLLCYGVSFRTRQNTVLITRGRSSC-- 67

Query: 75  TFARVEGMEGLADISI-KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133
              R+ G     +  I  +      + + + +N+  I    EL              +  
Sbjct: 68  ---RIHGEFRTEEGYILPILVEIGPTSKEIFLNEKKIANRKELFSISPCIVFAHDDIQFV 124

Query: 134 SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
            G  +  R+F+++++  +DP     +  + R++  RN  L E   D       + Q+A++
Sbjct: 125 VGSPLLHRQFMNQILTLVDPLFLDSLRTYNRILTSRNEALKEARED--LLEVYDDQLADI 182

Query: 194 GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
             +I + R  M++A SS++    ++  F      ++     + D      KEE  + L  
Sbjct: 183 AHQITVKRERMMDAFSSILRSTCEEFGFSGNVFDVSYRPSLRGD-----GKEELMRILRS 237

Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
            R  D M   T  GPHR  L+       +   + STGE +++ + + +A    +  +TG 
Sbjct: 238 ERTQDLMVGFTRRGPHRDRLVFTMNGHPVP-DYASTGEIRLLSLLLRVAQTTYVRESTGK 296

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAKFMRISNHQA 372
            PILL D++   LD  KR  +  ++       F    ++ +   L    +    +   + 
Sbjct: 297 TPILLFDDVLLELDPLKRRRVVEMIPHGRQSFFTFLPEEPILQVLGGGRSLVYHVVEGRI 356

Query: 373 L 373
            
Sbjct: 357 F 357


>gi|206900621|ref|YP_002251531.1| DNA replication and repair protein RecF, putative [Dictyoglomus
           thermophilum H-6-12]
 gi|206739724|gb|ACI18782.1| DNA replication and repair protein RecF, putative [Dictyoglomus
           thermophilum H-6-12]
          Length = 340

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 78/349 (22%), Positives = 143/349 (40%), Gaps = 26/349 (7%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ I+ +++  FRN++     F     +  G NG GKT+ILEAI++LS  R FR A    
Sbjct: 5   RMLIESISLKNFRNFSDFSTSFKDGINVIYGPNGSGKTSILEAIAYLSNPRSFRSARDYQ 64

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + +IG   FF    +V   +   +I+I     + +  +   +N   ++   ++ +     
Sbjct: 65  LIKIGEK-FFEITGKVLTGKEHHEITINYYYDELKKEKTAYLNGFKVKRFRDIQEIFIAI 123

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
                   +  G + +RR F D +   +D  +   + ++E+L+  RN +L     D  + 
Sbjct: 124 PFSFKDYAMIDGYATQRRDFFDDIFSLLDLEYYEILRNYEKLLDERNEILKSENIDRDYV 183

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +  +M  L  KI   R  MI  LS  +         P  K+       G         
Sbjct: 184 IYLAKEMQPLAEKIVEKREAMIKELSKYLD--------PMFKVEYVSEFKG--------- 226

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                K + D  + D     T +GPH  D  + Y          S G+++++ + + LA 
Sbjct: 227 -----KNIADYIEEDIARGSTTVGPHVHDDYIFYYKGNPAKYFASEGQKRLLYLSLVLAF 281

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            +LI  T  + P+ L D+    LD      L + ++++  Q+ +     
Sbjct: 282 RKLIEETKLYEPVFLFDDPINVLDPH---LLEKFISNLSGQVIIASLSP 327


>gi|315605505|ref|ZP_07880542.1| recombination protein F [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315312772|gb|EFU60852.1| recombination protein F [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 398

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 92/397 (23%), Positives = 151/397 (38%), Gaps = 31/397 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L + +FR++    +   A  T+ VG NG GKTN++EA+++LS     R  +   +
Sbjct: 1   MRVSHLALDDFRSWKHGVVELPAGTTVLVGANGQGKTNLVEALAYLSAFSSHRVGAEGAL 60

Query: 65  TRIGSPSFF----STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            RI S            R   +    +  ++LE    ++ R  +IN   +R  D L   +
Sbjct: 61  VRIPSDEAENPPGGAVIRARIVSSGREQVVELEIVRGKANRA-RINRAQVRPRDIL-GLV 118

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY--- 177
           R     P    +       RR FLD +   + P H     DF+R+ R R  L+       
Sbjct: 119 RTVVFAPEDLSLVRADPSVRRSFLDDLATQLSPLHASVRADFDRVARQRAALMKAAQASS 178

Query: 178 -----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                 D S     + Q AEL  +I+  R  +  AL                +L+L    
Sbjct: 179 RRGRTPDLSTLHVWDCQFAELSARISATRAAVAAALVEPTRRAYDDVADSPRRLTLAFDA 238

Query: 233 DGK-------FDQSFCAL------KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
                      D +   L       E     L   R  +      L+G HR DL +    
Sbjct: 239 SVDRVIGTDPEDPASADLTDAQAQAERMLAALAHVRDKEIERGVNLVGAHRDDLSLSLGS 298

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
             +   + S GE   V + + L    L+S+     PIL+LD++ A LD  +R  L   + 
Sbjct: 299 MPVK-GYASHGESWSVALALRLGAFELLSDGE-DTPILILDDVFAELDSSRRQGLAS-LA 355

Query: 340 DIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQALCI 375
               Q+ +T    + +  SL   A  +R+   +   I
Sbjct: 356 SRAEQVIVTCAVAEDLPSSLPHHALHVRLDAERGTVI 392


>gi|218961815|ref|YP_001741590.1| putative putative DNA repair and genetic recombination (recF-like)
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730472|emb|CAO81384.1| putative putative DNA repair and genetic recombination (recF-like)
           [Candidatus Cloacamonas acidaminovorans]
          Length = 358

 Score =  242 bits (617), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 151/350 (43%), Gaps = 9/350 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + +  FR+Y      F+ Q  + +G NG GKTN+LEAI++ S G+  R     ++
Sbjct: 1   MNLAKIELENFRSYRQNEFDFNPQGCLIIGPNGCGKTNLLEAIAYCSIGKSIRFHHDEEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G   F      +   +    +S+          + L+I+++ IR +  L + +++ +
Sbjct: 61  LNFGGQFFRVQSLFISDQQTPKKVSLSY----ADQHKLLKIDELPIRQLSSLFEVVKVIY 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    + SG    RR++ D  +  + P +   +  F  +++ RN +L   Y  +   +
Sbjct: 117 CAPEDHLLISGSPRFRRQYFDLAISQLYPPYINVLRHFLHIVQQRNAMLKRNYSRAE-IT 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           S     A    ++   R   +  +++   E  +        +SL      K      +  
Sbjct: 176 SWNLSFASSLAEVWNYRNRYLKQVNTAFQETFKDIFPASTAISLAYIPSLKL--PLESSP 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           EE  K L    + + + +R+L+G H  D       + + + + S G++++ ++ + L  A
Sbjct: 234 EEIIKHLATIEEREKLLQRSLVGAHLDDYEFKLKGRKM-LTYASQGQKRIAVIILKLIQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           RLI   TG  PI+L D+I A LD      +   + +   Q+F+    + +
Sbjct: 293 RLIEKVTGIKPIMLFDDIFAELDTFHSQQIRNCINN-RYQVFIASPKEDL 341


>gi|269925147|ref|YP_003321770.1| DNA replication and repair protein RecF [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269788807|gb|ACZ40948.1| DNA replication and repair protein RecF [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 386

 Score =  242 bits (617), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 84/350 (24%), Positives = 154/350 (44%), Gaps = 27/350 (7%)

Query: 28  QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS------FFSTFARVEG 81
              + +G N  GKT +LEAI  L+  +  R  S  ++    + S      F    A V  
Sbjct: 4   GPILVLGPNASGKTTLLEAIYLLATTKSHRAGSDRELINWNTESEEGVPAFARVAAEVRR 63

Query: 82  MEG-LADISIKLET--RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSM 138
                 +I+I  E+  + +   + +++N V  R +D L   + +    P    +  G   
Sbjct: 64  RSPIQVEITILKESTAQGENVRKRIRVNGVNKRAID-LIGQVNVVMFGPQDLDLIVGAPS 122

Query: 139 ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT---------EGYFDSSWCSSIEAQ 189
            RRR+L+  +  +D ++ R +  +ER++  RN L+               +   +  + +
Sbjct: 123 LRRRYLNITISQLDHQYVRTLQTYERVVLQRNTLIKALSDRAFKLRDESINDQFAYWDNE 182

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG------FLDGKFDQS-FCA 242
           +   G  +   R+E+++ ++ L      K      +LS+         L  + D      
Sbjct: 183 LVNQGSYLLARRLEILSRMNELASMVHSKLTGSSQELSIAYKSTLFDSLPLQLDNPREEE 242

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           +++ Y KK+ D R+ +     TL+GPHR D+            +GS G+Q+ V++ I LA
Sbjct: 243 IRDLYIKKIHDLRREELRRGMTLVGPHRDDISF-LVGGVDVGVYGSRGQQRSVILAIKLA 301

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
              L+ + TG  PILLLD++ + LD ++R  L + V  +  Q  +T TD 
Sbjct: 302 EVDLMKSITGDLPILLLDDVVSELDPERRRYLLQNVLQLSQQALVTTTDL 351


>gi|332296672|ref|YP_004438594.1| DNA replication and repair protein recF [Treponema brennaborense
           DSM 12168]
 gi|332179775|gb|AEE15463.1| DNA replication and repair protein recF [Treponema brennaborense
           DSM 12168]
          Length = 362

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/368 (22%), Positives = 152/368 (41%), Gaps = 10/368 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +    L+ + FRN  + ++   ++   FVG+NG GK+N+LEA+ + S    FR  +  ++
Sbjct: 1   MPFLSLSCTNFRNLKNDKIDLLSKEVYFVGENGQGKSNLLEALYYASYASSFRTHNEQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F       E  + +  +SI  E       + +Q N   I    EL   +    
Sbjct: 61  VRYDEKAFSIRTLFREENDSVVSMSILFE----NGKKTIQKNAKKITDRKELVNAIPCVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                     G    RR F+D+ +   D  +   M  F+++++ RN +L    +D     
Sbjct: 117 FCHDDLDFAVGEPERRRFFIDQSLSMYDALYIDEMRRFKKVLKSRNLVLKNQQYD--MLD 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + Q+A+ G+ +   R +MI   + +     +K       ++++     K         
Sbjct: 175 AYDTQLAQNGLYVQYKRKKMIFTFNGIFTALYEKVTGID-GVTISYEPSWKETSHTVPDV 233

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +     L + R  D M   T+ GPHR  +      K   I   STG++++  + +  A A
Sbjct: 234 DSIVDLLKNRRSADMMMGTTMSGPHRDRIRFIRGGKPF-IPTASTGQRRLASILLRAAQA 292

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETAK 363
              +  TG  P+LL+D++   LD DKR  +  ++     Q+F T      ++       +
Sbjct: 293 VYYTEITGRKPVLLMDDVLLELDPDKRQKVTALLPPYD-QLFCTFLPGEPYERYRRSDTR 351

Query: 364 FMRISNHQ 371
              I N +
Sbjct: 352 VYFIENGE 359


>gi|56417217|ref|YP_154291.1| recombination protein F [Anaplasma marginale str. St. Maries]
 gi|56388449|gb|AAV87036.1| RECF protein [Anaplasma marginale str. St. Maries]
          Length = 371

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 109/374 (29%), Positives = 176/374 (47%), Gaps = 6/374 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           + R  I+ + +  FRNY    L       + +G+NG GKTNILEAIS LS G G R  S 
Sbjct: 4   SPRSCIQSIKLCNFRNYTRAELESHGHSVVLLGENGSGKTNILEAISLLSKGPGLRNVSA 63

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           A +    S + +S    V  + G A  S+ +   +++  R L I++    +   L+  L 
Sbjct: 64  ACMQNRESSAPWSVHHAV--LSGNAQCSVSITKHENK--RRLLIDEKAG-LYSTLHNMLC 118

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I WL+P +D I      ER RF DR+V   D  +   ++ +E+  R R ++L E   D +
Sbjct: 119 IVWLMPQLDHILLKAPSERLRFFDRVVHIFDKDYSSHIVRYEKAKRDRRKILREAPQDVN 178

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           W +S+E  MA  GV I   R+  +  L   + +      F    + L   +  +  +S  
Sbjct: 179 WLTSLENVMAASGVCIARMRLNALEILQKTMADNDINSPFLKFNIHLDSAV-FELLESQE 237

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
                Y ++L + R  D   + T  G H     +   DK +  +  STGEQK++L+ + L
Sbjct: 238 HAVSRYMQQLGNSRMKDMHGQLTSFGIHNDHFQISNADKNLAASDCSTGEQKILLLSLLL 297

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
             A         API+LLD+I +HLD   +  L + + D+G Q ++T  D   F+ L   
Sbjct: 298 TAAVAKRKVHNQAPIMLLDDIMSHLDYTHKQELVQTIKDVGCQTWITDVDDRNFEGLERH 357

Query: 362 AKFMRISNHQALCI 375
              +RI+++    +
Sbjct: 358 FVRLRITDNSINPV 371


>gi|312621131|ref|YP_004022744.1| DNA replication and repair protein recf [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201598|gb|ADQ44925.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 353

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/349 (24%), Positives = 145/349 (41%), Gaps = 21/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK + +  FR Y      F  +  + VG+N  GKT++LEA+ F   G+ F+ +   D 
Sbjct: 1   MKIKSIYVENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCMCGKSFK-SRDIDA 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123
                    S + ++E +  + D    +    D+++ + + IND  I+ + EL    +  
Sbjct: 60  INFD-----SFYFKLEMLAEVGDTEYNVFCYVDKALDKRIMINDKKIKKLSELISTFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P    +       RRRFLD  V  + P   +   ++ R +  RN  L   Y      
Sbjct: 115 FFEPDATELIKHQPKLRRRFLDMEVTKLYPYMTKVYSEYHRALLSRNAFLK-SYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+++LG  I   R E+IN LS    +           L L             + 
Sbjct: 174 DVYDMQISQLGFLIFQKRQEVINKLSIEAQKIFSLVFENKSMLELKYMPSI-----IASN 228

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            +EY K++      D     T  G HR D  +   DK   I   S G+ K+  + + LA 
Sbjct: 229 DKEYYKEIKKNIDKDLSFGYTTKGVHRDDFEI-LIDKKPAINFASEGQIKLAAISVVLAT 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           + L        P+L+LD++ + LD  KR  L + ++    Q F+T  + 
Sbjct: 288 SLLYPE-----PVLILDDVFSELDSFKRKNLVKFISQY--QSFVTSAED 329


>gi|255003571|ref|ZP_05278535.1| recombination protein F [Anaplasma marginale str. Puerto Rico]
 gi|255004698|ref|ZP_05279499.1| recombination protein F [Anaplasma marginale str. Virginia]
          Length = 371

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 109/374 (29%), Positives = 175/374 (46%), Gaps = 6/374 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           + R  I+ + +  FRNY    L       + +G NG GKTNILEAIS LS G G R  S 
Sbjct: 4   SPRSCIQSIKLCNFRNYTRAELESHGHSVVLLGANGSGKTNILEAISLLSKGPGLRNVSA 63

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           A +    S + +S    V  + G A  S+ +   +++  R L I++    +   L+  L 
Sbjct: 64  ACMQNRESSAPWSVHHAV--LSGNAQCSVSITKHENK--RRLLIDEKAG-LYSTLHNMLC 118

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I WL+P +D I      ER RF DR+V   D  +   ++ +E+  R R ++L E   D +
Sbjct: 119 IVWLMPQLDHILLKAPSERLRFFDRVVHIFDKDYSSHIVRYEKAKRDRRKILREAPQDVN 178

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           W +S+E  MA  GV I   R+  +  L   + +      F    + L   +  +  +S  
Sbjct: 179 WLTSLENVMAASGVCIARMRLNALEILQKTMADNDINSPFLKFNIHLDSAV-FELLESQE 237

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
                Y ++L + R  D   + T  G H     +   DK +  +  STGEQK++L+ + L
Sbjct: 238 HAVSRYMQQLGNSRMKDMHGQLTSFGIHNDHFQISNADKNLAASDCSTGEQKILLLSLLL 297

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
             A         API+LLD+I +HLD   +  L + + D+G Q ++T  D   F+ L   
Sbjct: 298 TAAVAKRKVHNQAPIMLLDDIMSHLDYTHKQELVQTIKDVGCQTWITDVDDRNFEGLERH 357

Query: 362 AKFMRISNHQALCI 375
              +RI+++    +
Sbjct: 358 FVRLRITDNSINPV 371


>gi|303233458|ref|ZP_07320126.1| DNA replication and repair protein RecF [Atopobium vaginae
           PB189-T1-4]
 gi|302480466|gb|EFL43558.1| DNA replication and repair protein RecF [Atopobium vaginae
           PB189-T1-4]
          Length = 428

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 83/396 (20%), Positives = 146/396 (36%), Gaps = 38/396 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  ++N AS  L F    TI  G N  GKTNI+EAI   + G  F+    A    
Sbjct: 31  LQQLQLYNWKNIASATLEFSPAATILYGPNAAGKTNIIEAIHQCTTGVSFKHTPAAACIS 90

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRD----------DRSVRCLQINDVVIRVVDEL 116
            G+    +T   ++       ++ K+E              R+ R L  N    R    L
Sbjct: 91  QGTSQCSATATLIDAAR-TITLACKVEAPTPIASTENVPTQRAKRTLFANGKPARPYT-L 148

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           + +       P   +     +  RR   D     I   ++     +   +  RN LL +G
Sbjct: 149 SAYAPSIVFTPDDLQCIKQSAKARRDEFDMFAKTITREYQHIYTTYTHCIEQRNTLLKQG 208

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-- 234
                  ++ +         +  AR+ ++  L + I +  +    P   L+         
Sbjct: 209 -ISPDVRAAWDESFMRGAAALMYARMRLLERLYTHITDVYRTI-APSETLTYQYMPSWLR 266

Query: 235 ---------------KFDQSFCALKEEYAKKLF----DGRKMDSMSRRTLIGPHRSDLIV 275
                           F       K+E            + +++   +TL+GP R D+  
Sbjct: 267 LPAHVAPTISKLACAPFLPGQTPTKDELYTLFSTLQPQVQNLEAQRMQTLLGPQRDDVQF 326

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                       S G+Q+ +++ I +A   L     GF PILLLD++ + LDE +RN +F
Sbjct: 327 FINGMD-ARTCASQGQQRSIILAIKIAQVLLTHEIHGFYPILLLDDVMSELDELRRNTIF 385

Query: 336 RIVTDIGSQIFMTGTDKSVF-DSLNETAKFMRISNH 370
            ++   G Q  +T T+   F   +   AK + + + 
Sbjct: 386 SLI-HNGIQAIITTTNLGYFLPEIQARAKVVDLYDA 420


>gi|222475581|ref|YP_002563998.1| RECF protein (recF) [Anaplasma marginale str. Florida]
 gi|222419719|gb|ACM49742.1| RECF protein (recF) [Anaplasma marginale str. Florida]
          Length = 371

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 109/374 (29%), Positives = 177/374 (47%), Gaps = 6/374 (1%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           + R  I+ + +  FRNY    L       + +G+NG GKTNILEAIS LS G G R  S 
Sbjct: 4   SPRSCIQSIKLCNFRNYTRAELESHGHSVVLLGENGSGKTNILEAISLLSKGPGLRNVSA 63

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           A +    S + +S    V  + G A  S+ +   +++  R L I++    +   L+  L 
Sbjct: 64  ACMQNRESSAPWSVHHAV--LSGNAQCSVSITKHENK--RRLLIDEKAG-LYSTLHNMLC 118

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I WL+P +D I      ER RF DR+V   D  +   ++ +E+  R R ++L E   D +
Sbjct: 119 IVWLMPQLDHILLKAPSERLRFFDRVVHIFDKDYSSHIVRYEKAKRDRRKILREAPQDVN 178

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           W +S+E  MA  GV I   R+  +  L   + +      F    + L   +  +  +S  
Sbjct: 179 WLTSLENVMAASGVCIARMRLNALEILQKTMADNDINSPFLKFNIHLDSAV-FELLESQE 237

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
                Y ++L + R  D   + T  G H     +   DK +  ++ STGEQK++L+ + L
Sbjct: 238 HAVSRYMQQLGNSRMKDMHGQLTSFGIHNDHFQISNADKNLAASNCSTGEQKILLLSLLL 297

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
             A         API+LLD+I +HLD   +  L + + D+G Q ++T  D   F+ L   
Sbjct: 298 TAAVAKRKVHNQAPIMLLDDIMSHLDYTHKQELVQTIKDVGCQTWITDVDDRNFEGLERH 357

Query: 362 AKFMRISNHQALCI 375
              +RI+++    +
Sbjct: 358 FVRLRITDNSINPV 371


>gi|160946607|ref|ZP_02093810.1| hypothetical protein PEPMIC_00565 [Parvimonas micra ATCC 33270]
 gi|158446991|gb|EDP23986.1| hypothetical protein PEPMIC_00565 [Parvimonas micra ATCC 33270]
          Length = 366

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 81/353 (22%), Positives = 158/353 (44%), Gaps = 13/353 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++++ FRN   +   F     +FVG NG+GKTN+LEAI        FR+A   D 
Sbjct: 1   MIVEKIHLTNFRNLKDISFEFKENINVFVGKNGIGKTNVLEAIYISLVASSFRQAKQEDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              G       F +V+          K+     D   +  +I+D+ I+ V+EL     + 
Sbjct: 61  ISFGEN-----FTKVDTFVREKGFENKISFLYTDDKKKVFKIDDIKIKSVNELYDFSNVI 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD---S 180
              P   +I +     RR F D  +  +   +++++  +  ++  RN LL          
Sbjct: 116 GFFPDELKIITESPNFRRNFFDSFIMKMTKGYKQKLNLYRNVIFRRNLLLKGMNLSSFYK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              +++  ++A L  +I++ R ++I+ ++  +    Q+ +   + +     L        
Sbjct: 176 QEMNALTKKLALLCYEISMERKKLIDLINKEVNFIHQQLSGETLYIEYESILSNHKRSEN 235

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             LKE   +      K+DS ++ T  G H+ +      +     +  S G+++ +++ I 
Sbjct: 236 ECLKE-ILENFSKSYKIDSENKITSFGIHKENFKF-ILNGNDAKSFSSQGQKRNIIITIK 293

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS 353
           +    +     G  PI+LLD++ + LDED+R  +   +TD   Q+F+T TDKS
Sbjct: 294 MCQKNIFEEYKGVKPIILLDDLFSELDEDRRYEILEYLTDN--QVFITTTDKS 344


>gi|33241177|ref|NP_876119.1| recombinational DNA repair ATPase (RecF pathway) [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|33238707|gb|AAQ00772.1| Recombinational DNA repair ATPase (RecF pathway) [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
          Length = 355

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 76/354 (21%), Positives = 151/354 (42%), Gaps = 17/354 (4%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82
           +    +  + +G NG GK+N+LEA+  L   R  R +S  D+   G+          +  
Sbjct: 1   MKLTEKRLLVIGPNGAGKSNLLEAVELLGSLRSHRSSSDQDLIHWGASEAVVRAITSD-- 58

Query: 83  EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142
               +  ++LE R     +  +    + R +D L   LR          +  G  + RR 
Sbjct: 59  ----EEKLQLEFRKLGGRKASRNGKSLARQLD-LLGSLRCVGFSALDLSLVRGEPLLRRN 113

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS-----SWCSSIEAQMAELGVKI 197
           +LDR+V  ++P +   +  F RL+R RN+L  +    S     +   + ++QMA +  +I
Sbjct: 114 WLDRVVQQLEPVYGDLITRFNRLLRQRNQLWRQWKDRSKDEHYALLDAFDSQMALVSTRI 173

Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG--KFDQSFCALKEEYAKKLFDGR 255
           +  R+  +  L  +   + ++ +     L L        + ++   A +    K+L + R
Sbjct: 174 HRRRIRALKHLGPIAATWQKRLSKGKEDLELKYHPGSILEGEEEELAWRLTIEKQLAEQR 233

Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
             +       +GPHR +++    +       GS G+Q+ +++ + LA    +       P
Sbjct: 234 NEEERLGICKVGPHRDEVLF-LLNGVPARKFGSAGQQRTLVLALKLAELEFVGEMYKDPP 292

Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRIS 368
           ILLLD++ A LD  ++  L   V D   Q  ++ T    F+    + ++ + ++
Sbjct: 293 ILLLDDVFAELDPIRQLLLLEAVGD-NHQCLISATHLDAFEGDWRKNSQILELA 345


>gi|154250041|ref|YP_001410866.1| DNA replication and repair protein RecF [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153977|gb|ABS61209.1| DNA replication and repair protein RecF [Fervidobacterium nodosum
           Rt17-B1]
          Length = 339

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 26/349 (7%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ I+ L +  FR ++   + F     +  G NG GKT+ILEAI++LS  R FR      
Sbjct: 5   RMLIESLRLRNFRCFSEYEVNFKDGINVIYGPNGAGKTSILEAIAYLSNPRSFRGGRDYH 64

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + + G+ +FF    ++       DI++  ++ + +  +   ++   ++   ++ +     
Sbjct: 65  LIKFGT-NFFEVSGKIVSGGKKHDITVIYKSDETKKEKIAYLDGNKVKRFRDIQEVFIAI 123

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
                   +  G   +RR F D +   +D  +   + ++E+L+  RN LL E   D    
Sbjct: 124 PFSFKDYLMIDGYPSQRREFFDEIFSLLDLEYYEILRNYEKLLDERNALLAEENVDREKV 183

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +  +M  L  KI   R  MIN LS  +         P  K+       G         
Sbjct: 184 LKLANEMQPLAEKIVEKREIMINELSKYLD--------PMFKVEYVSEFKG--------- 226

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                K + D    D   R T +GPH  D  V Y +  I     S G+++++ + + +A 
Sbjct: 227 -----KNIADYIDEDIEKRVTTVGPHTHDDYVFYYNGYIAKYFASEGQKRLLYLSLIIAF 281

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            +LI  T  + P+ L D+    LD      L + ++++  Q+ + G   
Sbjct: 282 KKLIEETKLYEPVFLFDDPGNVLDPH---LLEKFISNLSGQVIIAGLSP 327


>gi|328951554|ref|YP_004368889.1| DNA replication and repair protein recF [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451878|gb|AEB12779.1| DNA replication and repair protein recF [Marinithermus
           hydrothermalis DSM 14884]
          Length = 343

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 95/366 (25%), Positives = 153/366 (41%), Gaps = 27/366 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++       FRN  S  L         VG N  GKTN+LEA+  L+ G   R A  ++ 
Sbjct: 1   MRLLRFRQRHFRNLRSSELTLAGGPLAVVGANAQGKTNLLEALY-LALGGEVRGA-LSER 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G       FA  E   G     ++ E R   + R +++N+     + EL ++    W
Sbjct: 59  VRFGEREA-QLFAEAETELGR----VRFEHRFGPAGREVKVNEAPA-SLRELAEYPGAVW 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +  G   ERRR++D ++     R+R  +  +ER +R RN LL  G    +  +
Sbjct: 113 VRPEDTALVLGGPEERRRWMDLLLTRFSARYRSLLSAYERALRQRNALLK-GQGRLAGLA 171

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +   ++A  G +I   R  ++  L  L  E  ++     ++L+L                
Sbjct: 172 AWNQKLATYGSEILQLRRRLLTRLEPLAQEAYRELAPGTLELALR----------ETVTP 221

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E Y + L    + +     TL GPHR DL +            S GE + + + + LA  
Sbjct: 222 EGYLEALETHLQEELERGATLFGPHRDDLKLLLNGLEAP-QFASRGEARAIALALRLAEH 280

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           RL+    G AP+LL+D+ +A LD  +R AL      +  Q  +TGTD        E    
Sbjct: 281 RLLWTHHGEAPVLLVDDFTAELDARRRTALLAYAQALP-QAILTGTDP------PEGLPV 333

Query: 365 MRISNH 370
           + I   
Sbjct: 334 VHIEGG 339


>gi|206901870|ref|YP_002251259.1| DNA replication and repair protein RecF [Dictyoglomus thermophilum
           H-6-12]
 gi|206740973|gb|ACI20031.1| DNA replication and repair protein RecF [Dictyoglomus thermophilum
           H-6-12]
          Length = 359

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 87/371 (23%), Positives = 160/371 (43%), Gaps = 19/371 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  FRN  +L L F     IF G+N  GKTNILE+I FL  G+ FR  +  ++
Sbjct: 1   MRLIDLRVVNFRNLKNLNLNFFD-VNIFYGENAQGKTNILESIYFLFSGKSFRTKNEREI 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  SF+     + G     + ++ LE+      + ++IN   ++   ++     I  
Sbjct: 60  IRWGEESFY-----LRGDVNWQNQNLVLESALSELEKKIKINQKNLKRYRDMVFLFPIIL 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                   F     +RR  L+R +  +  ++ + + ++ + +  RN  L  G       S
Sbjct: 115 FSQEEIENFKKGPSQRRYLLNRFISTLSYKYHKALSEYYKTLYQRNLTLKSGRD----VS 170

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
              + + +LG  I   R+ ++  + S + E V  +      L +          S   + 
Sbjct: 171 VWNSTLIKLGSYILFQRLSIVEEIKSKVKE-VSNKLLEKNFLEIEYISTVPLGDSEEEIA 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT---IAHGSTGEQKVVLVGIFL 301
           + +   L      +     TL+GPHR D+++      I      +GS GE+K+  +   L
Sbjct: 230 KNFEVMLKAKEAEEKKKGYTLVGPHRDDIVLRIIRDDIQYDLRKYGSAGEKKLGYIIWKL 289

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           A   ++S      PILL+D++   LDE K+  ++  + D   QIF+T       + L + 
Sbjct: 290 AQVEILSEKRKEKPILLIDDLFGDLDEYKQKRVWDGIKDF--QIFLTT--PIKIEFLRDF 345

Query: 362 AKFMRISNHQA 372
             F+ + N + 
Sbjct: 346 PHFL-VKNGEV 355


>gi|148284348|ref|YP_001248438.1| recombination protein F [Orientia tsutsugamushi str. Boryong]
 gi|146739787|emb|CAM79662.1| DNA replication and repair protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 383

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 100/372 (26%), Positives = 169/372 (45%), Gaps = 13/372 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L +  +RN   L +       + +G NG GKTN+LE+IS  +PGRG R A Y+D+ 
Sbjct: 14  RITKLVLHNYRNLTELTVSPKCDKILIIGKNGSGKTNLLESISLFAPGRGLRGAKYSDIL 73

Query: 66  RIGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
           R  +           ++    A +     +  + I      + + R +++ND  I    +
Sbjct: 74  RKEANSSSSSSNCHNTYSQWIAEITLQTAINIVKISTNYYQNTTKRNIKLNDNTI-TSHK 132

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L + + +  + P M+ +F   + +RR+ LDR+V+  D +H  R+  +E  +R R  LL  
Sbjct: 133 LLELVNMICITPQMESVFLNGATQRRKLLDRIVYLFDYKHAERVNKYEYYLRERMILLRS 192

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
               + W + IE  +A + V+I   R   I  L   + E      FP +KL +   +   
Sbjct: 193 NSSQTRWINVIENCLASISVEIASCRYNAIKQLQLYLDEIDA--PFPKVKLDIQCQIAEL 250

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
             Q    L E    +  + R +D  S ++  G HRSD  V +  K       STGEQK +
Sbjct: 251 CLQQSPKLLELINSRFCNSRTIDGNSGKSNFGVHRSDFKVIHSVKNQLAQFCSTGEQKAL 310

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           L+ + +A            PILLLDE+  HLD +KR  L + +T    Q +++ T+    
Sbjct: 311 LISLLIAQMLQSRKNYNRFPILLLDELFIHLDIEKRQYLAKFLTQFPVQCWISSTEPDDA 370

Query: 356 DSLNETAKFMRI 367
           +  +     + +
Sbjct: 371 NLFSNNCDIVNL 382


>gi|226356387|ref|YP_002786127.1| recombination protein F [Deinococcus deserti VCD115]
 gi|259563361|sp|C1CW06|RECF_DEIDV RecName: Full=DNA replication and repair protein recF
 gi|226318377|gb|ACO46373.1| putative DNA replication and repair protein RecF [Deinococcus
           deserti VCD115]
          Length = 363

 Score =  239 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 91/359 (25%), Positives = 148/359 (41%), Gaps = 23/359 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ L+   +RN A   L F A  T   G+NG GKTN+LEA      G          +
Sbjct: 4   VQLESLSTLNYRNLAPCTLSFPAGVTGVFGENGAGKTNLLEAAYLALTGLT-DVTRLEQL 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G    +   A +E    L+   + L     R  R L+++ V +R  D         W
Sbjct: 63  VQSGEGEAYVR-ADLESGGSLSIQEVGL----GRGRRQLKVDGVRVRAGDLPRG--SAVW 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
           + P    +  G    RR FLD ++  +  R+ +++  ++R +  RN  L  G     W  
Sbjct: 116 IRPEDSELVFGSPSGRRNFLDALLSRLSARYAQQLARYDRTVSQRNAALRSG---EEWAM 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              +  + +LG  I + R   +  LS L  E  +         +L          S    
Sbjct: 173 HVWDDALVKLGSDIMLFRRRALTRLSELAAEANE---------ALGSRKPLVLGLSESTT 223

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E YA  L   R  +     T  GPHR DL +   D   T  + S GE + + + +  A 
Sbjct: 224 PETYAHDLRSRRAEELARGSTATGPHRDDLTMTLGDFPAT-EYASRGEGRTIALALRRAE 282

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
             L++   G  P+LL+D+ SA LD  +R  L  +   +  Q  +TGT+++   +L   A
Sbjct: 283 LELLAERFGEKPVLLIDDFSAELDPTRRAFLLDLAASVP-QAIVTGTEQAPGAALTLRA 340


>gi|37521974|ref|NP_925351.1| recombination protein F [Gloeobacter violaceus PCC 7421]
 gi|51316323|sp|Q7NHY0|RECF_GLOVI RecName: Full=DNA replication and repair protein recF
 gi|35212973|dbj|BAC90346.1| DNA repair and genetic recombination protein [Gloeobacter violaceus
           PCC 7421]
          Length = 375

 Score =  239 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 161/376 (42%), Gaps = 12/376 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + + +FRNYA   L   +  TI VGDN  GK+N+LEA+  L+ GR  R     ++
Sbjct: 1   MFLRSVQLHDFRNYAEADLELTSPKTILVGDNAQGKSNLLEAVQLLATGRSTRALRDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G        A VE +    ++ + L     R+VR   +     R   E   +L    
Sbjct: 61  IARGKEQA-RVAATVERLGDTVELEMILRAGKRRTVR---VGGETRRTQVEALGYLHCVS 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  +  G    RR +LD ++  ++P +   +  F + +  RN LL          +
Sbjct: 117 FSSLDLDLVRGAPETRRDWLDGILLQLEPVYTNVLAQFVQALHQRNALLRSTELSPDALA 176

Query: 185 S----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 +  +      +   R  +I  L+ L   +    +      ++       F+Q  
Sbjct: 177 EQLPCWDDLLVRAATPVMRRRHRLIERLAPLARRWHGSISGGRETFAVRYQPQISFEQED 236

Query: 241 C-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             ++++   + L + R ++     +L+GPHR ++ +   D+      GS G+Q+ +++ +
Sbjct: 237 AQSVQQALQELLKEKRTLEGRRGTSLVGPHRDEVDLSI-DEIPARQFGSQGQQRTLVLAL 295

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-L 358
            LA   L+   TG  P+LLLD++ A LD  +++ L   + +   Q  +T T  S+FDS  
Sbjct: 296 KLAELELLEQVTGEVPLLLLDDVLAELDLHRQDQLLGAIQE-RVQTIVTTTHLSLFDSQW 354

Query: 359 NETAKFMRISNHQALC 374
            ++A  + I   +   
Sbjct: 355 LQSATVLTIEKGRIGS 370


>gi|312126265|ref|YP_003991139.1| DNA replication and repair protein recf [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776284|gb|ADQ05770.1| DNA replication and repair protein RecF [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 353

 Score =  238 bits (608), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 88/349 (25%), Positives = 148/349 (42%), Gaps = 21/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK + I  FR Y      F  +  + VG+N  GKT++LEA+ F   G+ F+ +   D 
Sbjct: 1   MKIKNIYIENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCICGKSFK-SRDVDA 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNKHLRIS 123
                    S + ++E    + +I   +    D+++ + + IND  I  + EL    +  
Sbjct: 60  INFD-----SYYFKLEMSAEVGNIEYNVFCYVDKALDKRIMINDKKINRLSELISLFKFV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +  P   R+       RRRFLD  V  + P   +   +++R +  RN  L   Y      
Sbjct: 115 FFEPDTTRLIKHQPKLRRRFLDMEVAKLYPYMTKVYSEYQRALHSRNAFLK-SYDKKDII 173

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              + Q+++LG  I   R E+I+ LS    +           L L             + 
Sbjct: 174 DVYDVQISQLGFLIFQKRQEVIDRLSIEAQKIFSYVFENKSLLELKYMPSIN-----ASS 228

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +EEY K++      D     T  G HR D  +    K   I   S G+ K+  V + L+ 
Sbjct: 229 EEEYYKEMKKHLVKDLSLGYTTKGIHRDDFEILIDGKP-AIDFASEGQIKLAAVSVVLSS 287

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           A L +      P+L+LD++ + LD+ KR  L + ++    Q F+T  + 
Sbjct: 288 ALLYTE-----PVLILDDVFSELDKFKRRNLIKFLSQY--QSFVTSAED 329


>gi|189183858|ref|YP_001937643.1| recombination protein F [Orientia tsutsugamushi str. Ikeda]
 gi|189180629|dbj|BAG40409.1| RecF protein [Orientia tsutsugamushi str. Ikeda]
          Length = 378

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 98/372 (26%), Positives = 169/372 (45%), Gaps = 13/372 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I  L +  +RN   L +       + +G NG GKTN+LE+IS  +PGRG R A Y+D+ 
Sbjct: 9   RITKLVLHNYRNLTELIVSPQCDKILIIGKNGSGKTNLLESISLFAPGRGLRGAKYSDIL 68

Query: 66  RIGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
           R  +           ++    A +     +  + I      + + R +++ND  I    +
Sbjct: 69  RKEANLSSNSSNCHNAYSQWIAEITLQTAINIVKISTNYYQNTTKRNIKLNDNTI-TSHK 127

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L + + +  + P M+ +F   + +RR+ LDR+V+  D +H  R+  +E  +R R  LL  
Sbjct: 128 LLELVNMICITPQMESVFLNGATQRRKLLDRIVYLFDYKHAERVNKYEYYLRERMILLRS 187

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
               + W + IE  +A + ++I   R   I  L   + E      FP +KL +   +   
Sbjct: 188 NSSQTRWINVIENCLASISLEIASCRYNAIKQLQLYLDEIDA--PFPKVKLDIQCQIAEL 245

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           + Q    L E    +  + R +D  S ++  G HRSD  V +  K       STGEQK +
Sbjct: 246 YLQQSPKLLELINSRFCNSRTIDCNSGKSNFGVHRSDFKVIHSVKNQLAQFCSTGEQKAL 305

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           L+ + +A            PILLLDE+  HLD +KR  L + +     Q +++ T+    
Sbjct: 306 LISLLIAQMLQSRKNYNRFPILLLDELFIHLDIEKRQYLAKFLAQFPVQCWISSTELDDA 365

Query: 356 DSLNETAKFMRI 367
           +  +     + +
Sbjct: 366 NLFSNNCDIVNL 377


>gi|53802865|ref|YP_115418.1| DNA replication and repair protein RecF [Methylococcus capsulatus
           str. Bath]
 gi|81680705|sp|Q602N2|RECF_METCA RecName: Full=DNA replication and repair protein recF
 gi|53756626|gb|AAU90917.1| DNA replication and repair protein RecF [Methylococcus capsulatus
           str. Bath]
          Length = 359

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/370 (22%), Positives = 142/370 (38%), Gaps = 17/370 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I++ RN  S  L       +  G NG GKT++LEAI  LS G+ FR      +
Sbjct: 1   MALLKLDIADVRNIESASLSPGEGLNLLFGANGSGKTSLLEAIYLLSRGKSFRSPQSGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R   P        V G  G     I +  R  RS + +++         +L +      
Sbjct: 61  IRFDRPCL-----TVSGSIGRPGAGIAVGVRLGRSEKEVRVGGRSCDSSAQLIRLFPAVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P+   +  G    RR+ LD  VF ++  +   +  F R +  RN +L  G    S  +
Sbjct: 116 IHPASVALLEGPPRWRRQMLDWGVFHVEQGYLDLLRRFSRTLEQRNAVLR-GDAPGSSLA 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +   ++A  G  I   R   ++ +     E V         + L      +         
Sbjct: 175 AWSGELARWGTMIAELRSSYLDRIRMHFGEMVSAL-LGRTDVELVVRPGWR-------AG 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             YA  L   +  D     T  GP + D  V    +     + S G+ K++   + LA A
Sbjct: 227 WSYADALAASQPTDRRLGYTEPGPQKGDFAVLVGGRP-ARDYLSRGQLKLLTYALLLAQA 285

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT--GTDKSVFDSLNETA 362
            L+         LL+D+I++ LD   +  L  +V   G Q F+T  G  + V   +  TA
Sbjct: 286 GLLEADQPGRVCLLVDDIASELDSRNQERLLSLVKSTGLQSFVTFSGATQGVAAVVGRTA 345

Query: 363 KFMRISNHQA 372
           +   +   + 
Sbjct: 346 RVFHVEQGRI 355


>gi|119953227|ref|YP_945436.1| DNA replication and repair protein RecF [Borrelia turicatae 91E135]
 gi|119861998|gb|AAX17766.1| DNA replication and repair protein RecF [Borrelia turicatae 91E135]
          Length = 358

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 84/371 (22%), Positives = 151/371 (40%), Gaps = 21/371 (5%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++ IK +    F+N  +  + FD  +  F G+NG GKTNIL+AI  L+    F   +  +
Sbjct: 3   KM-IKKVEFFNFKNIENRVINFDFNNIYFCGENGSGKTNILDAIYCLAFASSFLVRTDRE 61

Query: 64  VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           +   G   F    F   EG  G   +S+          + +++N+ +++    L  ++  
Sbjct: 62  LITYGKTEFYLKCFYNTEGKAGEIGLSL------RNGKKEIKVNNSIVKDRKNLILNIPS 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
                       G   ++R F D+ +  +   +   +  + ++++ RN +L +G  D   
Sbjct: 116 VIFSNYDTDFIIGAPAKKRWFFDQAISLVSLSYLDSLRKYRKILQQRNLILRQGNKD--L 173

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
                    +   +I   R   I         Y          L +      K     C+
Sbjct: 174 LKVYNETFVDFAFEITKMRENFIKHFYEFFKYYYSFIFDVSYSLEIKYLPSVK-----CS 228

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
            ++E+ + L    + +  S  TLIGPHR DL      + +   H STG+ + + +   L 
Sbjct: 229 KRDEFLQTLLLKEQDELYSESTLIGPHR-DLYEILSGERVFTHHSSTGQIRALALIYRLI 287

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              + +   G APILL D++   LD  +R  +F I+    SQ F T  D      + + +
Sbjct: 288 QVIMFNKQFGIAPILLFDDVFLELDSMRRKRIFDILPK-DSQCFFTFLDDCY--DIKQDS 344

Query: 363 KFM--RISNHQ 371
           KF+  RI N +
Sbjct: 345 KFIVYRIKNGR 355


>gi|146329283|ref|YP_001209128.1| DNA replication and repair protein RecF [Dichelobacter nodosus
           VCS1703A]
 gi|146232753|gb|ABQ13731.1| DNA replication and repair protein RecF [Dichelobacter nodosus
           VCS1703A]
          Length = 356

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 159/372 (42%), Gaps = 18/372 (4%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++I  L    FR+  S   L F  +  I  G  G GKT +LEA+  L  G+ FR A    
Sbjct: 1   MRIDSLQTQHFRHLKSAAALAFHPKLNIISGKTGSGKTALLEALYCLGRGKSFRTAQVRH 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +      S+F   A +   +G   + ++   R  R    ++++   +  +  L   L + 
Sbjct: 61  MIAY-QQSYFRLIAELSDQDGNYFLGMERRARGYR----VRLDGQTLNGLSALAALLPVH 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            +      + +    ERRRFLD  +F  D         ++  ++GRNR L EG+ D  + 
Sbjct: 116 IVYADHFSLLTAAPQERRRFLDYGLFFDDAAFLPLWQRYQYALKGRNRALMEGWQD-HYI 174

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            S    +AE   KI+I R + +  L + + +Y       H  L     L  ++D+ +   
Sbjct: 175 RSWHPLLAETAEKIDILRRDYLKRLENRLNQY-------HAHLGGLQTLRIRYDRGWHG- 226

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +  + L +    D   + T  G HR+D  +   D  I     S G+QK VL  + L+ 
Sbjct: 227 --DLRQTLDENLARDQQIKYTRDGIHRADWRLFCEDYDIAHTF-SRGQQKTVLCALILSQ 283

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
           A  I   +   P++L+D+I+A LD +++  L R +    +Q+F+T  +  +    +   +
Sbjct: 284 ADEIRARSKKVPVILVDDITAELDIERQQLLLRFLQASEAQLFITALEAKLLAISDSDCE 343

Query: 364 FMRISNHQALCI 375
              +       I
Sbjct: 344 QFYLDRGHIQQI 355


>gi|229083318|ref|ZP_04215680.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44]
 gi|228699993|gb|EEL52616.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44]
          Length = 245

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 9/244 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1   MYITELQLKNYRNYEYLDLSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R         + +++G     + S+ LE    +  +  ++N +  + + +    + +  
Sbjct: 61  IRWDED-----YGKIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVM 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----S 180
             P    +  G    RRRFLD  +  I P +   +  +++++  RN LL +   +     
Sbjct: 116 FAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEE 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +       Q+ E G KI   R E ++ L        +  +    +L +         +S 
Sbjct: 176 AMLDVFTIQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESM 235

Query: 241 CALK 244
              +
Sbjct: 236 DLYE 239


>gi|254430013|ref|ZP_05043720.1| RecF/RecN/SMC N terminal domain, putative [Alcanivorax sp. DG881]
 gi|196196182|gb|EDX91141.1| RecF/RecN/SMC N terminal domain, putative [Alcanivorax sp. DG881]
          Length = 369

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 160/374 (42%), Gaps = 23/374 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS-YADVT 65
           +  L +S+FRNY S  +       + +GDNG GKT++LEAI F+  G    R    + + 
Sbjct: 2   LSRLQLSDFRNYGSAEVDLSPSLNVILGDNGSGKTSLLEAIYFIGSGGRSFRGGRLSRLV 61

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           R G+ +  + +A V   E L  + +    R    +  ++++    + + E+   L +  L
Sbjct: 62  RDGAEAA-TLYAEVLAAEELHRLGV---RRTPGGIDAIKLDGQTPKALSEVAALLPVLAL 117

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P+   +  G S  RRRF+D  +F ++ +           ++ RN LL  G         
Sbjct: 118 HPTSVELVFGSSQLRRRFMDWGMFHVEHQFMPVWRAGSAALKQRNALLRTGRPSQRELGF 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
              Q+A+   +I   R   + AL   + E +     P +K+ L      + D+S      
Sbjct: 178 WNQQLAQTSDRIEGLRRSYLAALQRGLDEVL-VVLAPELKIRLRLQTGLQKDES------ 230

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            Y + L   +  D     +  G HRSD+ ++     +     S G+ K+V  G+ LA   
Sbjct: 231 -YGQALDRLQTDDLRRGFSQAGFHRSDIRIE-SHGVVARDRLSRGQAKLVAYGMVLAQLP 288

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET---- 361
           LIS   G    LL+D+++A LDE+ RN L   +   G Q  +T  D   + ++       
Sbjct: 289 LISQA-GKVCTLLVDDLAAELDEEHRNQLLGYLATTGHQTLITALDMPQWAAIVNDNNAL 347

Query: 362 ----AKFMRISNHQ 371
               +K   + + +
Sbjct: 348 QAVESKMFHVEHGK 361


>gi|187918304|ref|YP_001883867.1| DNA replication and repair protein RecF [Borrelia hermsii DAH]
 gi|119861152|gb|AAX16947.1| DNA replication and repair protein RecF [Borrelia hermsii DAH]
          Length = 355

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 81/366 (22%), Positives = 146/366 (39%), Gaps = 14/366 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +    F+N  +  + FD  +  F G+NG GKTNIL+AI  L+    F   +  ++  
Sbjct: 2   IKKIEFFNFKNIKNQVINFDFNNIYFYGENGSGKTNILDAIYCLAFASSFLVNTDRELIT 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G   F+      +  E  A+IS+          + +++N+ +I+   +L  ++      
Sbjct: 62  YGKTEFY-LKCFYKTREKDAEISLSF----RNGKKEIKVNNSLIKDRKDLILNIPAIVFS 116

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
                   G   ++R F D+ +  +   +   +  + R+++ RN +L +G  D       
Sbjct: 117 NYDTDFIIGEPAKKRWFFDQAISLVSLSYLDSLRKYRRILKQRNLILKQGNRD--LLKVY 174

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
                +  ++I   R   I         Y          L +       +       ++E
Sbjct: 175 NEAFVDYALEIIRMRENFIKHFYEFFKYYYSLIFDVSYNLEIKYLPSVAY-----CGRDE 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           +   LF   K + ++  TLIGPHR DL      + +   H STGE + + +   L    +
Sbjct: 230 FLHLLFLKEKDEFLNESTLIGPHR-DLYEILSGERVFTHHSSTGETRALALIYRLVQVII 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
            +   G APILL D++   LD  +R  +F I+    SQ F T  D+             +
Sbjct: 289 FNKRFGIAPILLFDDVFLELDSTRRKRVFDILPK-DSQCFFTFVDECYDIKQKSNFIVYK 347

Query: 367 ISNHQA 372
           + N + 
Sbjct: 348 VKNGKI 353


>gi|217966464|ref|YP_002351970.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM
           6724]
 gi|217335563|gb|ACK41356.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM
           6724]
          Length = 340

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 140/349 (40%), Gaps = 26/349 (7%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ I+ + +  FRN++  +  F     +  G NG GKT+ILEA+++LS  R FR A    
Sbjct: 5   RMVIESIYLRNFRNFSDFKTNFKDGINVIYGPNGSGKTSILEAVAYLSNPRSFRGARDHQ 64

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + ++G   FF    ++       +I+I     + +  +   ++   ++   ++ +     
Sbjct: 65  LIKLGEK-FFEINGKILSGNESHEITISYHHDEIKKEKIAYLDGFKVKRFRDIQEIFIAI 123

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
                   +  G + +RR F D +   +D  +   + ++E+L+  RN LL E   D  + 
Sbjct: 124 PFSFKDYAMIDGYATQRRDFFDDIFSLLDLEYYEILRNYEKLLDERNDLLKEENIDRDYV 183

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +  +M  L  KI   R  MI  LS  +    + E     K                  
Sbjct: 184 IYLAKEMQPLAEKIVEKRETMIKELSKYLDPMFKVEYISEFK------------------ 225

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                K + D  + D     T +GPH  D    Y          S G+++++ + + LA 
Sbjct: 226 ----GKNIVDYIEEDIARGITTVGPHVHDDYTFYYKGNPAKYFASEGQKRLLYLSLVLAF 281

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            +LI  T  + P+ L D+    LD      L + ++ +  Q+ +     
Sbjct: 282 RKLIEETKLYEPVFLFDDPVNVLDPH---LLEKFISHLSGQVIIASLSP 327


>gi|57238782|ref|YP_179918.1| recombination protein F [Ehrlichia ruminantium str. Welgevonden]
 gi|58578707|ref|YP_196919.1| recombination protein F [Ehrlichia ruminantium str. Welgevonden]
 gi|57160861|emb|CAH57763.1| putative DNA replication and repair protein RecF [Ehrlichia
           ruminantium str. Welgevonden]
 gi|58417333|emb|CAI26537.1| DNA replication and repair protein recF [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 372

 Score =  236 bits (603), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 105/371 (28%), Positives = 172/371 (46%), Gaps = 10/371 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  FRNY ++ L    +  + +G NG GKTNILEAIS LS G G R  +   +  
Sbjct: 9   IQNLRLINFRNYLNIELDTSGKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVNMESMQN 68

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S   +S    +     +  I I    + +     L  N         L+K + + WL+
Sbjct: 69  SSSDLPWSISYHIHNQNSIYPIVI---AKGNNKRSILISNKS--HNYITLHKIISVVWLI 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P +D IF     ER +F DR+V   D  +   +I + +  + RN+LL     D+ W SS+
Sbjct: 124 PQLDHIFLKSQSERLKFFDRVVHIFDTNYTSYIIKYNKAKQDRNKLLRSNSVDNFWLSSL 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E+ MAE G+KI   R+ ++  L +++ +     +F    + +   +    D       E 
Sbjct: 184 ESIMAENGIKIAQIRLNVVQILQNVLSKNNLSNSFFKAVIEIKSQVFPLLDNENS--IEN 241

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           Y + L   R  DS +     G H  ++ + + +K +  +  STGEQK++L+ + L+    
Sbjct: 242 YKENLQKSRARDSSTNLVNFGVHNDNVQIFHLEKNLIASCCSTGEQKILLLSLVLSSVLA 301

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNETAKF 364
               TG  PILLLD+I +HLD   +  L   +  I  Q+++T  D  +  F    E  KF
Sbjct: 302 -KQDTGEYPILLLDDIMSHLDVYHQEKLLETIVSIKCQVWITDIDLKQQNFTKYKEHFKF 360

Query: 365 MRISNHQALCI 375
             + ++    I
Sbjct: 361 FHVGDNNINSI 371


>gi|15806109|ref|NP_294813.1| recombination protein F [Deinococcus radiodurans R1]
 gi|13959503|sp|Q9RVE0|RECF_DEIRA RecName: Full=DNA replication and repair protein recF
 gi|126031361|pdb|2O5V|A Chain A, Recombination Mediator Recf
 gi|6458823|gb|AAF10663.1|AE001959_3 recF protein [Deinococcus radiodurans R1]
          Length = 359

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 92/363 (25%), Positives = 151/363 (41%), Gaps = 25/363 (6%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
             +++  L+   +RN A   L F    T   G+NG GKTN+LEA      G+        
Sbjct: 2   GDVRLSALSTLNYRNLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQT-DAPRIE 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            + + G       + R +  +G   +SI+ E    R  R L+++ V  R  D        
Sbjct: 61  QLIQAGETEA---YVRADLQQG-GSLSIQ-EVGLGRGRRQLKVDGVRARTGDLPRG--GA 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            W+ P    +  G    RR +LD ++  +  R+  ++  +ER +  RN  L  G     W
Sbjct: 114 VWIRPEDSELVFGPPSGRRAYLDSLLSRLSARYGEQLSRYERTVSQRNAALRGG---EEW 170

Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEY-VQKENFPHIKLSLTGFLDGKFDQSF 240
                +  + +LG +I + R   +  L  L  E   Q  +   + L+LT           
Sbjct: 171 AMHVWDDVLLKLGTEIMLFRRRALTRLDELAREANAQLGSRKTLALTLT----------E 220

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E YA  L   R  +     T+ GPHR DL++   D   +  + S GE + V + + 
Sbjct: 221 STSPETYAADLRGRRAEELARGSTVTGPHRDDLLLTLGDFPAS-DYASRGEGRTVALALR 279

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            A   L+    G  P+LLLD+ +A LD  +R  L  +   +  Q  +TGT+ +   +L  
Sbjct: 280 RAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-QAIVTGTELAPGAALTL 338

Query: 361 TAK 363
            A+
Sbjct: 339 RAQ 341


>gi|58616769|ref|YP_195968.1| recombination protein F [Ehrlichia ruminantium str. Gardel]
 gi|58416381|emb|CAI27494.1| DNA replication and repair protein recF [Ehrlichia ruminantium str.
           Gardel]
          Length = 372

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 174/368 (47%), Gaps = 10/368 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  FRNY ++ L   ++  + +G NG GKTNILEAIS LS G G R  S   +  
Sbjct: 9   IQNLRLINFRNYLNIELDTSSKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVSMESMQN 68

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S   +S    +     +  I I  +  + RS+     N   I     L+K + + WL+
Sbjct: 69  SSSDLPWSVSYHIHNQNSIYPIVI-AKGNNKRSILISNKNHNYIT----LHKIISVVWLI 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P +D IF     ER +F DR+V   D  +   +I + +  + RN+LL     D+ W SS+
Sbjct: 124 PQLDHIFLKSQSERLKFFDRVVHIFDTNYTSYIIKYNKAKQDRNKLLRSNSVDNFWLSSL 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E+ MAE G+KI   R+ ++  L +++ +     +F    + +   +    D       E 
Sbjct: 184 ESIMAENGIKIAQIRLNVVQILQNVLSKNNLSNSFFKAVIEIKSQVFPLLDNENS--IEN 241

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           Y + L   R  DS +     G H  ++ + + +K +     STGEQK++L+ + L+    
Sbjct: 242 YKENLQKSRARDSSTNLVNFGVHNDNVQIFHLEKNLIANCCSTGEQKILLLSLVLSSVLA 301

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNETAKF 364
               TG  PILLLD+I +HLD   +  L   +  I  Q+++T  D  +  F    E  KF
Sbjct: 302 -KQDTGEYPILLLDDIMSHLDVYHQEKLLETIVSIKCQVWITDIDLKQQNFTKYKEHFKF 360

Query: 365 MRISNHQA 372
             + ++  
Sbjct: 361 FHVGDNHI 368


>gi|217967931|ref|YP_002353437.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM
           6724]
 gi|217337030|gb|ACK42823.1| DNA replication and repair protein RecF [Dictyoglomus turgidum DSM
           6724]
          Length = 359

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 85/372 (22%), Positives = 155/372 (41%), Gaps = 19/372 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  FRN  +L L F     IF G+N  GKTNILE I FL  G+ FR  +  ++
Sbjct: 1   MRLIDLKVINFRNLKNLSLNFFD-VNIFYGENAQGKTNILEGIYFLFSGKSFRTKNEKEI 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  SF+     ++G       ++ LET      + ++IN   ++   ++     I  
Sbjct: 60  IRWGEESFY-----LKGNVDWQSQNLILETALSGEEKRIKINQKNLKRYRDMVFLFPIIL 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                   F     +RR  L+R +  +  ++ + + ++ + +  RN  L          S
Sbjct: 115 FSQEEIENFKKGPSQRRYLLNRFISTLSYKYHKALSEYYKALYQRNLTLKNERD----VS 170

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
              + +  LG  I   R  ++  +   + E V         L +          S   + 
Sbjct: 171 LWNSTLIRLGGYILFERRNVMEEIKRKVKE-VSNNLLGRDFLEVEYLSSVPLGDSEEEML 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT---IAHGSTGEQKVVLVGIFL 301
           + +   L +    +   + TL+GPHR D+I+      +       GS GE+K+  +   L
Sbjct: 230 KNFETMLKEKEWEEKRKKYTLVGPHRDDVILRVIRDNVKYDLRKFGSAGEKKLGYIIWKL 289

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           A   ++S      PILL+D++   LDEDK+  ++  + +   QIF+T   +  F    + 
Sbjct: 290 AQVEILSENRKEKPILLIDDLFGDLDEDKQRKVWEGIKNF--QIFLTTPIRIEF---LKD 344

Query: 362 AKFMRISNHQAL 373
                + N + +
Sbjct: 345 FPHFLVKNGEVI 356


>gi|187735102|ref|YP_001877214.1| DNA replication and repair protein RecF [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425154|gb|ACD04433.1| DNA replication and repair protein RecF [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 351

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 78/365 (21%), Positives = 142/365 (38%), Gaps = 21/365 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L + +FR Y S       Q  I +G+N  GKT++LEA+ FL   +  R A    +  
Sbjct: 2   ISRLKLMDFRCYGSFSWQIPQQGAIILGNNARGKTSLLEAVCFLLRLQSPRTARTGPLVS 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-VVDELNKHLRISWL 125
            G  SF        G+ G     I+       +   L++N    +     L     + W+
Sbjct: 62  HGKQSF--------GIRGELPGQIRRILWAPDAP-DLRVNGEPRKDQRSYLADSYPVVWM 112

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
                 +    +  RR+++D +     P +R  +  + R ++ RN LL   + D     +
Sbjct: 113 GNDDLSLVQAGADARRKYMDFLGSQWHPGYRLALFSYRRALKTRNYLLKHRHRDKLQLDA 172

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
              Q+A  G ++   R  ++  L+  I    +       ++S+      + D        
Sbjct: 173 YTRQLALHGTELRNLRANLLALLAPHIALAYRNIGGRQEQVSIAYRASEEGD-------- 224

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
              ++L      D    +T  GPHR DL +    +       S G+Q+   + + LA + 
Sbjct: 225 -LYERLCASMDRDIRYGQTQNGPHRDDLDITLNGRN-AAQFASEGQQRTTAISMKLAQSS 282

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           L++  TG  PI L+D++   LD  +R A  + +    +Q  +T T      +        
Sbjct: 283 LLTEETGHTPIHLIDDVFGELDPTRRIAFLQSLPA-DAQSLITTTHLDWLHNAPCPLPAF 341

Query: 366 RISNH 370
           R+ + 
Sbjct: 342 RLEDG 346


>gi|325283210|ref|YP_004255751.1| DNA replication and repair protein recF [Deinococcus proteolyticus
           MRP]
 gi|324315019|gb|ADY26134.1| DNA replication and repair protein recF [Deinococcus proteolyticus
           MRP]
          Length = 357

 Score =  235 bits (601), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 88/349 (25%), Positives = 140/349 (40%), Gaps = 23/349 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L+   +RN A   L F A  T   G+NG GKTN+LEA      GR        ++
Sbjct: 4   VRLSKLSTLNYRNLAPDTLEFPAGVTGVWGENGAGKTNLLEAAYLALTGRTE-AGRLEEL 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G    +     +EG           E    R  R L+++ V  R  D          
Sbjct: 63  VLAGQAEAYVRADVLEGGSLSVQ-----EVGIGRGRRQLKVDGVRTRTGDLPRG--SAVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-C 183
           + P    +  G   +RR +LD ++  +  R+  ++  +ER +  RN  L EG     W  
Sbjct: 116 IRPEDSELVFGSPSQRRAYLDSLLGRLSARYAEQLSRYERTVSQRNAALREGQ---DWAL 172

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              +A +  LG  I   R   +  L  L           + +L     LD +  +S    
Sbjct: 173 DVWDAPLVTLGRDIMEFRARALVRLEELARHA-------NAELGSRKALDIRLLESTDP- 224

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              YA+ L   R  +     TL GPHR DL +          + S GE +   + +  A 
Sbjct: 225 -ASYAQTLHARRAEELARGVTLTGPHRDDLELTLGGLNAG-TYASRGEGRTAALSLRYAE 282

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
            +L+S   G  P+LL+D+ +A LD  +R  L  +   +  Q  +TGT++
Sbjct: 283 LQLLSERFGEPPVLLIDDWTAELDPQRRQFLLDLAASVP-QAIVTGTEQ 330


>gi|319648522|ref|ZP_08002738.1| DNA replication and repair protein recF [Bacillus sp. BT1B_CT2]
 gi|317389601|gb|EFV70412.1| DNA replication and repair protein recF [Bacillus sp. BT1B_CT2]
          Length = 275

 Score =  235 bits (600), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 107/272 (39%), Gaps = 9/272 (3%)

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
           N +  + + +    +      P    +  G    RRRFLD  +  + P +   +  ++++
Sbjct: 2   NHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKI 61

Query: 166 MRGRNRLLT----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           +  RN  L         D +    +  Q+ E   K+ + R++ ++ L           + 
Sbjct: 62  LSQRNHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISR 121

Query: 222 PHIKLSLTGF--LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
              +L+L     L          +   Y +     R  +     +L GPHR D++     
Sbjct: 122 GLEELTLKYHTSLHVSDSPDLSKMINSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNG 181

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           + +   +GS G+Q+   + + LA   LI    G  PILLLD++ + LD+ +++ L   + 
Sbjct: 182 RDV-QTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLSELDDYRQSHLLHTIQ 240

Query: 340 DIGSQIFMTGTDKSVFDS-LNETAKFMRISNH 370
               Q F+T T     D      A+  R+ N 
Sbjct: 241 G-RVQTFVTTTSVDGIDHKTLNEAEIFRVENG 271


>gi|227496603|ref|ZP_03926881.1| recombination protein F [Actinomyces urogenitalis DSM 15434]
 gi|226833883|gb|EEH66266.1| recombination protein F [Actinomyces urogenitalis DSM 15434]
          Length = 409

 Score =  235 bits (600), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 150/399 (37%), Gaps = 46/399 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+  +FR+Y  L L  +   T F+G NG GKTN++EA+ +LS     R  + + +
Sbjct: 1   MYVSDLSADDFRSYEHLVLSLEPGVTAFIGSNGQGKTNLVEAVGYLSNLTSHRVGADSAL 60

Query: 65  TRI---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            R    G P       R + + G     +++E    ++ R  ++    +R   EL   LR
Sbjct: 61  IRRAEPGQPQPAGAVLRAKVVHGERPTVLEIELISGKANRA-RLGRSPVR-PRELLGVLR 118

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS- 180
                P    +       RRRFLD +   + P       + ++++  R  LL        
Sbjct: 119 TVIFAPEDLSLVREEPGVRRRFLDDLAVTLRPSLAGVRTEHDKILAQRASLLKSARAARR 178

Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFL 232
                 S     +AQ+A     +  ARV+++  L   +    +  +     + L+    L
Sbjct: 179 STASMLSTLEVWDAQLAAAAATLIAARVDVVRRLRPWVASAYEAVSQAQSPVHLAYRSSL 238

Query: 233 ---DGKFDQSFCAL---------------------KEEYAKKLFDGRKMDSMSRRTLIGP 268
              +G  D    A+                      E     +      +      L+G 
Sbjct: 239 LAHEGMADPDPRAITPGQEESWPPGEAELLDQASTAERLEAAMGQLHAREIDRGANLVGA 298

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT-----GFAPILLLDEIS 323
           HR +L +            S GEQ  + + + LA   ++ +          P+L+LD++ 
Sbjct: 299 HRDELSLFLSGMPAK-GFASHGEQWSLALALRLASYEMLRHDVAAYGGDGEPVLILDDVF 357

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNET 361
           A LD+ +R AL   V     Q+ +T    + V   L+ T
Sbjct: 358 ASLDDKRRRALAHTVAGAQ-QVLVTAAVPQDVPGELDGT 395


>gi|326772841|ref|ZP_08232125.1| RecF protein [Actinomyces viscosus C505]
 gi|326637473|gb|EGE38375.1| RecF protein [Actinomyces viscosus C505]
          Length = 405

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 85/407 (20%), Positives = 154/407 (37%), Gaps = 44/407 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+Y SL L  +   + FVG NG GKTN++EAI +L+     R  +   +
Sbjct: 1   MYVSDLSLDDFRSYRSLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTAL 60

Query: 65  TRI---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            R    G         R   + G     +++E    ++ R  ++N    R  D L   LR
Sbjct: 61  VRRAAPGQAQPAGAVVRARAVHGERPSVLEIEIIAGKANRA-RLNRGGCRPRD-LLGVLR 118

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS- 180
                P    +       RR FLD +V  + P       + ++++  R  LL        
Sbjct: 119 AVVFAPEDLSLVRAEPGVRRGFLDDLVVTLRPGLAGVRAEHDKILAQRASLLKSARAARS 178

Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-----PHIKLSLT 229
                 S     +AQ+A    ++  ARV+++  L   +    +  +         +L+  
Sbjct: 179 SISSMLSTLEVWDAQLAAAAARLIAARVDVVRRLRPWVASAYETVSGTSGQRSRAQLAYR 238

Query: 230 GFL---------DGKFDQSFCALKEEYAKKLF----------DGRKMDSMSRRTLIGPHR 270
             L         D   + ++ A +E    +            +    +      L+G HR
Sbjct: 239 SSLLTHEGHPEPDPHDESAWLAGEETLLDEAALAARLESAMGELHAREIDRGANLVGAHR 298

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-----PILLLDEISAH 325
            DL +            S GEQ  + + + LA   ++            P+L+LD++ A 
Sbjct: 299 DDLSLFLTGLP-ARGFASHGEQWSLALALRLASYDMLRTDIDAYGGDGEPVLILDDVFAS 357

Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
           LDE +R AL ++V      +     D  V   L  +    R+++ + 
Sbjct: 358 LDEQRRRALAQMVAGAQQVLLTAAVDDDVPAEL--SGARYRVADGEV 402


>gi|320334765|ref|YP_004171476.1| DNA replication and repair protein recF [Deinococcus maricopensis
           DSM 21211]
 gi|319756054|gb|ADV67811.1| DNA replication and repair protein recF [Deinococcus maricopensis
           DSM 21211]
          Length = 368

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 82/361 (22%), Positives = 138/361 (38%), Gaps = 23/361 (6%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
            + ++ L    +RN +   L      T   G+NG GKTN+LEA      G          
Sbjct: 11  HVHLRALTTLHYRNLSPATLDLPRGITSIWGENGAGKTNLLEAAYLALTGLT-NAPRVEQ 69

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +   G    +   A +      + + + L     R  R ++++ V  R  D         
Sbjct: 70  LVTRGEREGYVR-ADLHSGGSTSILEVGL----ARGRRHVKVDGVRARSSDLPRG--SAV 122

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW- 182
           W+ P    +  G    RR +LD ++  +  R+  ++  FER +  RN  L  G    +W 
Sbjct: 123 WIRPEDSDLVYGSPSARRAYLDALLSRLSVRYAHQLSRFERTLTQRNAALKSG---ETWA 179

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               +  +  LG ++   R  ++  L+ L                L G        +   
Sbjct: 180 MDVWDDALVTLGSELMTMRRRVLVRLAELTQAAHT---------QLGGHKPLTLALTEST 230

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             E Y   L   R  +    +T+IGPHR DL +   D        S GE + V + +  A
Sbjct: 231 TPETYLADLAARRAEELARGQTVIGPHRDDLALTL-DLFPAADFASRGEARTVALALRKA 289

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
              L+    G  P+LL+D+ +A LD ++R  L  +   +  Q  +TGT+ +    L   A
Sbjct: 290 ELDLLRERYGENPVLLIDDFTAELDPNRRQFLLDLAHSVP-QALVTGTEHAPGARLTLRA 348

Query: 363 K 363
           +
Sbjct: 349 E 349


>gi|320535591|ref|ZP_08035688.1| DNA replication and repair protein RecF [Treponema phagedenis
           F0421]
 gi|320147554|gb|EFW39073.1| DNA replication and repair protein RecF [Treponema phagedenis
           F0421]
          Length = 356

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 77/370 (20%), Positives = 157/370 (42%), Gaps = 21/370 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +    +++  FRN ++  +   A     +G NG GKTN+LE++   S G  FR  + +++
Sbjct: 1   MPFLTISLVNFRNLSNKPIDLSAPEVFLIGKNGQGKTNLLESLYIASYGNSFRTRTDSEI 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              G+  +      + E  + ++ IS           + ++ N   IR   +L   +   
Sbjct: 61  YTTGTNEYSIRAMYKAEKTDSISIIS-------KNGKKQIEKNLKKIRSRKDLVNTIPCV 113

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
               +      G    RR F+D+ +   +P +   +  +  L++ +N+ + E        
Sbjct: 114 LFFHNDLDFAVGSPERRRFFIDQSLSMYNPFYLDLLQKYTVLLKTKNKEIKEQK--RVLL 171

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-A 242
            S++ Q+A +G +I   R + I+  +++  +          K+S    +  ++  S+  +
Sbjct: 172 DSLDVQIASVGFEIISYRKKTIDEFNTIFSDIY-------EKVSGIDNVRIEYKPSWKHS 224

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             EE    L   R+ D +    + GPHR  +     +  + I+  STG+ +++ + +  A
Sbjct: 225 SAEEVMAHLAARREKDILLGTCMSGPHRDKIHF-VRNNELFISTASTGQLRLISLVLRTA 283

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NET 361
            A   +  TG  PILL+D++   LD DKR +   ++     Q+F T      +     E 
Sbjct: 284 QALFFTKITGKLPILLMDDVLLELDPDKRKSFTDLLPKYD-QLFCTFLPGEPYKKYAKEK 342

Query: 362 AKFMRISNHQ 371
                +SN +
Sbjct: 343 TLIYFVSNGE 352


>gi|226226221|ref|YP_002760327.1| DNA replication and repair protein RecF [Gemmatimonas aurantiaca
           T-27]
 gi|226089412|dbj|BAH37857.1| DNA replication and repair protein RecF [Gemmatimonas aurantiaca
           T-27]
          Length = 376

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 85/353 (24%), Positives = 144/353 (40%), Gaps = 16/353 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L + E+RN+ SL L       + +G+NG GKTN+LEA+++L   R FR A  ADV R
Sbjct: 2   LAQLAVREYRNFHSLDLEVPTGGLVVIGENGHGKTNLLEAVAYLGLLRSFRGARDADVIR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+P+F    A +        +S+  E    R  +   ++ V    +      L      
Sbjct: 62  FGAPAFH-VRATLHAPAAWHTVSVGYERSSKR--KRATLDGVEQPRLTSALGALPSVEFS 118

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGYFD 179
           P+   + +    ERRR+LD M+    P +   +  +   +  RN +L             
Sbjct: 119 PADVALVASGPGERRRYLDVMLALSSPAYLVALQGYRSALLRRNAVLKAAQRSAVRAQEQ 178

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL----SLTGFLDGK 235
            +  S  E  +AE G  I  AR   + A +    E           L    S+ G     
Sbjct: 179 EARVSVWEPALAEHGGVIVAARHAFVRAQAGYYAELCAAIGERQEALLRYVSVGGDTRSD 238

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
                   ++   +     R  +     TL+GP R DL +    + +    GS G+Q+  
Sbjct: 239 ALTDPLMQQDALTRAFTQQRSAELRRGVTLVGPQRDDLQLTLGGRELR-TFGSAGQQRSA 297

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFM 347
            + + L     + +  G++P+LLLD+  A LD  +   +  ++   G SQ+ +
Sbjct: 298 AIALRLLELITLRDALGYSPLLLLDDPFAELDLGRAARVLDLLDAAGASQVLL 350


>gi|94985720|ref|YP_605084.1| DNA replication and repair protein RecF [Deinococcus geothermalis
           DSM 11300]
 gi|123257076|sp|Q1IXW9|RECF_DEIGD RecName: Full=DNA replication and repair protein recF
 gi|94556001|gb|ABF45915.1| DNA replication and repair protein RecF [Deinococcus geothermalis
           DSM 11300]
          Length = 358

 Score =  234 bits (596), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 91/362 (25%), Positives = 153/362 (42%), Gaps = 25/362 (6%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + +++  L+   +RN A   L F A  T   G+NG GKTN+LEA      G         
Sbjct: 2   SGVQLSSLSTLNYRNLAPGTLHFPAGVTGVFGENGAGKTNLLEAAYLALTGLT-DVTRLE 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            + + G       + R +  +G   +SI+ E    R  R L+++ V  +  D        
Sbjct: 61  QLIQSGEREA---YVRADVQQG-GSLSIQ-EVGLGRGRRHLKVDGVRAKTGDLPRG--SA 113

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            W+ P    +  G    RR +LD ++  +  R+ +++  +ER +  RN  L  G     W
Sbjct: 114 VWIRPEDSELVFGPPAGRRAYLDALLSRLSARYGQQLARYERTVAQRNAALKAG---EDW 170

Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEY-VQKENFPHIKLSLTGFLDGKFDQSF 240
                +  + +LG  I + R   +  L  L  E   Q  +   + L+L          S 
Sbjct: 171 AMHVWDDALVKLGTDIMLFRRRALTRLDELAREANAQLGSRKPLTLTL----------SE 220

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E YA  L   R  +     T+ GPHR DLI+   +   +  + S GE + V + + 
Sbjct: 221 STTPETYAHDLAARRAEELSRGATVTGPHRDDLILTLGELPAS-EYASRGEGRTVALALR 279

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            A   L++   G  P+LL+D+ +A LD  +R  L  +   +  Q  +TGT+++   +L  
Sbjct: 280 CAELELLAEKFGEKPVLLIDDFTAELDPGRRGFLLDLAASVP-QAIVTGTERAPGAALTL 338

Query: 361 TA 362
            A
Sbjct: 339 RA 340


>gi|23465220|ref|NP_695823.1| recombination protein RecF [Bifidobacterium longum NCC2705]
 gi|189440296|ref|YP_001955377.1| recombinational DNA repair ATPase [Bifidobacterium longum DJO10A]
 gi|322690196|ref|YP_004219766.1| recombination protein RecF [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|23325848|gb|AAN24459.1| recombination protein RecF [Bifidobacterium longum NCC2705]
 gi|189428731|gb|ACD98879.1| Recombinational DNA repair ATPase [Bifidobacterium longum DJO10A]
 gi|320455052|dbj|BAJ65674.1| recombination protein RecF [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 395

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 130/357 (36%), Gaps = 18/357 (5%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82
           + F     I  G NG+GKTN++EA+  LS G   R +S   +   G  +        +  
Sbjct: 2   VDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPLIERGQTTATIRANVADDA 61

Query: 83  EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142
                    +  R     R   IN      + ++   +      P   R+ SG    RR 
Sbjct: 62  GQTTTYEASIHARGANRAR---INSGSSLYLRDIIGKIPSVSFTPEDQRLVSGDPGARRT 118

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----------SSWCSSIEAQMAE 192
            +++    ++P + + +  F R+ + R  LL +   +           S       Q  E
Sbjct: 119 MMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANVNNGQPMDAVLSGLEIWTGQFIE 178

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
            GV +   R  +I  L+               +++LT          F     + ++   
Sbjct: 179 AGVALTRMRAHVIGLLAEPFAAIYADLAGAGEQVTLTYAPSFDEVLMFDDPHPQISEHFQ 238

Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
                +      LIGP R D+ ++           S GE   + + + +A   ++ +  G
Sbjct: 239 RIYPGEVARGVNLIGPQRDDMNLELGGIP-AREFASNGEMWTMALALKMALFEIVRDRLG 297

Query: 313 FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRIS 368
             PI++LD++ A LD+ +R  +         Q+ +T   +  V D   E+A  + ++
Sbjct: 298 LQPIVILDDVFAQLDDSRRTQILDFARK-QDQVLITVAAEGDVPDY--ESAHRIDVA 351


>gi|6580764|gb|AAF18270.1| DNA/ATP binding protein [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 318

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 106/318 (33%), Positives = 165/318 (51%), Gaps = 8/318 (2%)

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           D+ R      F+  A++  +E    I   +I +      S R +++N V     + L++ 
Sbjct: 1   DLVRREGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTT-SANALSEW 59

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYF 178
           L I WL P+MDR++   +  RRRFLDR+   I P H R    +E  MR RN+LL+ E  +
Sbjct: 60  LAILWLTPAMDRLYQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGY 119

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--F 236
           D  W   +E  MAE    I +AR ++++ LS  I +  +   F    L+L   +D +   
Sbjct: 120 DPLWLDGLEQIMAEQATHILLARRQLVDLLSEEIAKQ-EDGLFAKADLALEEGVDSRDLV 178

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
             +   +           R  D+   RTL G HR+DL V +  KA+  A  STGEQK +L
Sbjct: 179 THNSEEIMPLLQNIWQKSRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQSSTGEQKALL 238

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           +G+ LA   LI+   G  P+LLLDE++AHLD  +R  LF I+   G Q++MTGT+ S+F+
Sbjct: 239 LGLVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLFE 298

Query: 357 SLNETAKFMRISNHQALC 374
           +  E A + ++   + + 
Sbjct: 299 TAGEAACYFQLDKGEIIS 316


>gi|159904234|ref|YP_001551578.1| recombination protein F [Prochlorococcus marinus str. MIT 9211]
 gi|159889410|gb|ABX09624.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9211]
          Length = 352

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 84/347 (24%), Positives = 148/347 (42%), Gaps = 17/347 (4%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
           + +G NG+GK+N+LEA+  L   R  R +S  D+      S               +  I
Sbjct: 7   LVIGPNGIGKSNLLEAVELLGSLRSHRASSDQDLIHWEEKSALLRAIT------EDEDKI 60

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           +LE R  +  R    ND  +    +L   LR          +  G    RR +LDR+V  
Sbjct: 61  ELELR-KKGGRKAYRNDKCLSRQIDLIGPLRCVGFSALDLHLVRGEPSLRRHWLDRVVLQ 119

Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSIEAQMAELGVKINIARVEMI 205
           ++P +   M    RL+R RN+L       SS        + + Q+A +  +I+  R   +
Sbjct: 120 LEPVYSDLMSRLIRLLRQRNQLWRNWKHTSSKDYGTLLDAFDVQLALVSTRIHRRRQRAL 179

Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK--EEYAKKLFDGRKMDSMSRR 263
           N L  L + + ++ +  +  L L        ++    L+      K+L + R ++     
Sbjct: 180 NRLKPLAILWQERLSKGNEALELHYLPGSFLEKQDEELECRLSIEKQLLEQRAVEQKLGH 239

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
             +GPHR ++     + A     GS G+Q+ +++ + LA   LI    G APIL+LD++ 
Sbjct: 240 CRVGPHRDEIEF-LLNGASARRFGSAGQQRTIVLSLKLAELELIGEIYGEAPILILDDVL 298

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISN 369
           A LD  ++  L   V     Q  ++ T    F+      ++ +++ N
Sbjct: 299 AELDPMRQLLLLEAVGHK-HQCLISATHLDAFEGDWRGESQLLQLGN 344


>gi|281356710|ref|ZP_06243201.1| DNA replication and repair protein RecF [Victivallis vadensis ATCC
           BAA-548]
 gi|281316837|gb|EFB00860.1| DNA replication and repair protein RecF [Victivallis vadensis ATCC
           BAA-548]
          Length = 353

 Score =  233 bits (594), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 88/358 (24%), Positives = 150/358 (41%), Gaps = 15/358 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L ++ FR+YA+ R  F +   +F G NG GKTN+LE+I FLS  R FR  S  ++ R
Sbjct: 4   IEQLELANFRSYAAGRFRFSSSRVVFTGPNGAGKTNLLESIYFLSILRSFRTVSGRELVR 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           IG    F   ARV+      ++ +          R   I    IR   E  +  R    V
Sbjct: 64  IG-ERGFELKARVDKGAYHEELRLAQTLAGK---RETWIGANRIRRSSEFIREFRAVVFV 119

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    I  G S  RRRF D M+  +D  +   + ++ R +  RNR L +    ++  ++ 
Sbjct: 120 PEDRNISGGSSSFRRRFFDMMISTLDGGYLTALNNYYRALSQRNRALKQ-KEQAAVAAAF 178

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E +MA     I   R      +   +   + ++     ++             +     E
Sbjct: 179 EPEMAVNAPLIARQRRIYAKLIEEEVSRMLAEDGNLEFRIVCR--------TDYPENAAE 230

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           Y + L   R  + +   TL GP   +       K +   +GSTG+ +++ + + LA   L
Sbjct: 231 YREMLERNRPKEQLRSCTLSGPQLDEFDFLLNGKLLRY-YGSTGQIRIISLLLKLAEFNL 289

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           +         +L+D+++  LDE  +   FR ++    Q F T T+    +   +  + 
Sbjct: 290 VKRAAKEPVAVLVDDVTGELDELNKARFFRTISGADQQFF-TFTELPELEIFRDAEEI 346


>gi|58584386|ref|YP_197959.1| recombination protein F [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|58418702|gb|AAW70717.1| Recombinational DNA repair ATPase, RecF [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 356

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 102/367 (27%), Positives = 166/367 (45%), Gaps = 11/367 (2%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M     IK L +S FRN+ +  L  D    + +G NG+GKTNILEAIS L+   G ++A 
Sbjct: 1   MAAHCYIKKLKLSNFRNHLNFELDSDDSSVVIIGKNGIGKTNILEAISLLAKSNGMKKAK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            +++    S   ++          L  I I          + +QI   +      L +  
Sbjct: 61  ASEMQNRFSNKDWAVHYDFFNGADLNSIGIAKSFN----KKLIQIGGKMQSSYSSLYRIS 116

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            + WL+P MD I      +R +FLDR+V   +  +    + + +  R R RLL E   + 
Sbjct: 117 NVIWLIPQMDYILLNSPSDRLKFLDRIVSLFEENYACYYMRYRKAKRERGRLLRENILNK 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           SW SS+E  MA   V I   R+ ++  L   I  Y   + FP + L     L      + 
Sbjct: 177 SWLSSLENIMAVNAVNILDMRLSVLKMLQDTINSY-STQFFPKVSLKFNSQL------TL 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               + +  +L + R+ DS++ R     +     V    + + I   STGEQK++L+ I 
Sbjct: 230 SDTAKYFQNRLRENREKDSLTGRITFCVNNDKFQVFCQRRDLPINLCSTGEQKLLLLSII 289

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           L+  +        AP+LLLD+I +HLD+  R  L   +  I  Q ++T  D++ F +  +
Sbjct: 290 LSSVKARCIHYNKAPLLLLDDIMSHLDKYYRKVLIEEMLSIRCQAWITDVDQNNFGNYID 349

Query: 361 TAKFMRI 367
             K + +
Sbjct: 350 YFKTIEL 356


>gi|184199649|ref|YP_001853856.1| DNA replication and repair protein RecF [Kocuria rhizophila DC2201]
 gi|183579879|dbj|BAG28350.1| DNA replication and repair protein RecF [Kocuria rhizophila DC2201]
          Length = 474

 Score =  232 bits (593), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 93/389 (23%), Positives = 154/389 (39%), Gaps = 27/389 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR YA L L      T+FVG NGVGKTNI+EA+ + +     R +    +
Sbjct: 1   MFVDHLSLLDFRTYAGLDLALTPGLTVFVGPNGVGKTNIVEAVDWAATLGSHRVSGNTPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+        R+    G     ++ E    R+ R        +R  + L   L    
Sbjct: 61  IATGAERAI---VRLRVNRGGQRTVLEHELNATRANRVRLNRAAPVRARESL-GILHTVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF------ 178
             P    +  G    RRRFLD +  A+ P       D+ER +R RN LL           
Sbjct: 117 FSPEDLTLVKGDPSHRRRFLDDLATAMRPVLSAARSDYERALRQRNALLKSTRRSHGLSD 176

Query: 179 -DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP----HIKLSLTGFLD 233
            D +  +    Q+A  G  +  AR++++ AL   +    Q+         ++   +    
Sbjct: 177 SDRATLAVWNDQLARAGAAVMAARLQLLKALEPEVDRAYQQLTEGPKHVTLEYESSSVAP 236

Query: 234 GKFDQ-----SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
           G   Q     S   L E   +      + +     TL+GPHR DL++   D      + S
Sbjct: 237 GAEQQALQHFSVADLHELMMQAFERMERQERERGITLVGPHRDDLVIHLGDTPAK-GYAS 295

Query: 289 TGEQKVVLVGIFLAHARLISNTT---GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
            GE     + + L    +        G AP+L+LD++ A LD  +R  L  +V     Q+
Sbjct: 296 HGETWSTALALRLGSWYVHLADDPSPGAAPVLILDDVFAELDARRRRRLAELVRQAE-QV 354

Query: 346 FMT-GTDKSVFDSLNETAK-FMRISNHQA 372
            +T   D+ +  +L E +   + +     
Sbjct: 355 LVTAAVDEDLPAALLEHSHTVVDVEPGAV 383


>gi|269958391|ref|YP_003328178.1| recombination protein F [Anaplasma centrale str. Israel]
 gi|269848220|gb|ACZ48864.1| recombination protein F [Anaplasma centrale str. Israel]
          Length = 371

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 106/369 (28%), Positives = 172/369 (46%), Gaps = 6/369 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  FRNY    L       + +G NG GKTNILEAIS LS G G R  S   +  
Sbjct: 9   IQSIKLCNFRNYTRAELETHGCSVVLLGKNGSGKTNILEAISLLSKGPGLRNVSADCMQN 68

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S + +     V  + G    S+ +   +++  R L I++    +   L+  L I WL+
Sbjct: 69  HESGTPWRVHHTV--LSGSTQFSVSVTKHENK--RRLFIDEKAG-LYSTLHNMLCIVWLM 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P +D +      ER RF DR+V   D  +   ++ +ER  R R ++L E   D +W +S+
Sbjct: 124 PQLDHVLLKAPSERLRFFDRVVHVFDKDYASHIVRYERARRDRRKVLREAPQDLNWLASL 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E  MA  GV I   R+  +  L   + +      F    + L   +  +  +S      +
Sbjct: 184 ENVMAISGVYIAQTRLNALRILQQTMADNNIDSPFLKFTIHLDSGV-FELLESQEHAVSQ 242

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           Y ++L   R  D   + T  G H     + + DK +T +  STGEQK++L+ + L  A  
Sbjct: 243 YMQRLKQSRAQDMHGQLTSFGVHNDHFQISHADKNLTASSCSTGEQKILLLSLLLTAAIT 302

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
                  API+LLD+I +HLD   R  L + +  +G Q ++T  D+  F+ L +     R
Sbjct: 303 KHRVHSQAPIMLLDDIMSHLDYTHRQELVQTIKSVGCQTWITDVDERNFEGLEQCFMRFR 362

Query: 367 ISNHQALCI 375
           I+++    +
Sbjct: 363 ITDNDIGPV 371


>gi|119503575|ref|ZP_01625658.1| recombination protein F [marine gamma proteobacterium HTCC2080]
 gi|119460637|gb|EAW41729.1| recombination protein F [marine gamma proteobacterium HTCC2080]
          Length = 376

 Score =  232 bits (591), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 78/377 (20%), Positives = 164/377 (43%), Gaps = 16/377 (4%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           + +  +++ + I   RN ++ RLV  ++  +  G NG GK++I+EA+S LS GR FR +S
Sbjct: 4   LHDNFRLESVYIDGVRNLSAQRLVMGSEINLISGPNGSGKSSIVEALSMLSTGRSFRSSS 63

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
              V + G        A+V     +  + I    R       L+++   +  + E    +
Sbjct: 64  VRSVIQHGRDDCI-VQAQVRYRGSVRSLGI---RRSKTGELTLRLDGEPMSSLAEFAAQV 119

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
               + PS     +G    RRR +D  +F ++         ++R+++ RN +L  G    
Sbjct: 120 PTIIIDPSSTDTITGPPDSRRRLIDGTLFHVEHGFLDVWRRYQRVLKQRNAMLRRGMMRG 179

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                   +++ +G  +   RV +++ L  +    + + N       L          S 
Sbjct: 180 Q--DPWLRELSRVGSDLTNYRVGLVSRLGPVFKSILAELNSALADTELVFRFGWDASLSL 237

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            A        L    + D     T +GPHR+DL + +  ++++    S G+ K+ ++ + 
Sbjct: 238 EA-------GLARSTESDIAQGFTHVGPHRADLRLQWQGRSMSDVF-SRGQLKLAVIALR 289

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS--L 358
           LA  R+++ + G AP+ L+D+++A LD+     + R++    SQ+ +T   +   +   +
Sbjct: 290 LAQGRVLAESGGGAPLYLVDDLTAELDDHHALQVCRMLEQTSSQVVLTTVSELAQERPWM 349

Query: 359 NETAKFMRISNHQALCI 375
           ++ +    +       +
Sbjct: 350 HDVSSVFHVEQGCVSKV 366


>gi|203284347|ref|YP_002222087.1| DNA replication and repair protein RecF [Borrelia duttonii Ly]
 gi|201083790|gb|ACH93381.1| DNA replication and repair protein RecF [Borrelia duttonii Ly]
          Length = 355

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 149/365 (40%), Gaps = 14/365 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +    F+N  +  + FD  +  F G+NG GKTNIL+AI  L+    F   +  ++  
Sbjct: 2   VKKIEFFNFKNIENQVINFDFDNIYFCGENGSGKTNILDAIYCLAFASSFLVNTDKELIT 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G   F   + +        +  I L  R+D+  + +++N+ ++R   +L  ++      
Sbjct: 62  YGEREF---YLKCFYQTKEKNGEINLSVRNDK--KEIKVNNSIVRDRRDLILNIPAIIFS 116

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
                   G  M+RR F D+ +  I   +   +  + ++++ RN +L +   D       
Sbjct: 117 NHDIDFIIGTPMKRRWFFDQAMSFISLSYLDSLRKYRKILKQRNLILKQR--DKDLLKIY 174

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
                +  ++I   R   +         Y          L +  F         C  K+E
Sbjct: 175 NETFVDCALEITEMRKNFVEHFCRFFQYYCSLIFDVSCNLEIKYFPSVT-----CCSKDE 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           + + L    K +  S  TLIGPHR DL     +  +   H STG+ +V+ +   L    +
Sbjct: 230 FFEILCLREKDELYSETTLIGPHR-DLYEILSEHRVFTDHASTGQIRVLALIYRLVQVII 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
            ++    +PILL D++   LD  KR  +F I+    SQ F T  D     +        R
Sbjct: 289 FNDKFNMSPILLFDDVFLELDSIKRKKVFEILPK-DSQCFFTFLDDCYDVNRESNFIVYR 347

Query: 367 ISNHQ 371
           ++N +
Sbjct: 348 MNNGR 352


>gi|313611862|gb|EFR86322.1| DNA replication and repair protein RecF [Listeria monocytogenes FSL
           F2-208]
          Length = 278

 Score =  231 bits (589), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 114/277 (41%), Gaps = 8/277 (2%)

Query: 102 CLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
             ++N +  + + +   +L +    P    +  G    RRRFL+  +  + P +   + +
Sbjct: 1   RAKVNHLEQKKLSQYVGNLNVVIFAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSE 60

Query: 162 FERLMRGRNRLLT----EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
           ++R+++ RN+ L     +   D      +  Q A++ + +   R + I  L +       
Sbjct: 61  YQRILQQRNQYLKMLQMKRKVDPILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHH 120

Query: 218 KENFPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
           + +     L +        +       K +  +K+   ++ +     TLIGPHR D +  
Sbjct: 121 QISRGLETLKIEYKASVTLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFY 180

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
              + +    GS G+Q+   + I LA   LI   TG  P+LLLD++ + LD+ +++ L  
Sbjct: 181 INGQNV-QDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLG 239

Query: 337 IVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQA 372
            +     Q F+T T  S  D    + A    +     
Sbjct: 240 AIEGK-VQTFVTTTSTSGIDHETLKQATTFYVEKGTV 275


>gi|254421230|ref|ZP_05034948.1| DNA replication and repair protein RecF [Synechococcus sp. PCC
           7335]
 gi|196188719|gb|EDX83683.1| DNA replication and repair protein RecF [Synechococcus sp. PCC
           7335]
          Length = 401

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 82/402 (20%), Positives = 164/402 (40%), Gaps = 47/402 (11%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
             FRNY+S  + F A  TI +GDN  GK+N+LEA+  L+  +  R +   D+   G  + 
Sbjct: 2   QNFRNYSSQSVAFGAPKTILLGDNAQGKSNLLEAVELLATLKSHRTSRDRDLVGEGKKTA 61

Query: 73  FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
               A+++   G +++++ L        R   +N   ++   +    L           +
Sbjct: 62  H-IKAQLQKELGPSELNLVLRNGGR---RATILNGETLKRQQDFLGSLNAVQFSSLDIDL 117

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------GYFDSSWCSS 185
             G   ERR ++D ++  ++P +   +  + ++++ RN  + +         FDS+  + 
Sbjct: 118 VRGGPGERRSWIDTLLTQLEPVYAYILQQYNQVLKQRNAFIKQHTDEENSQPFDSTQMAL 177

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--------------- 230
            +AQ+   G ++   R   +  L  L   + +  +    +L +T                
Sbjct: 178 WDAQLVAAGTRVIRRRSRGLQRLIPLAQAWHRAISGDAEQLMITYQPNISTTVSTTGLST 237

Query: 231 ------------------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
                              ++         +++ + +K+      +   R +L GPHR D
Sbjct: 238 EAGLSTEETLLLKDPKKDSVEDAQLDDPDHIQQVFFEKIKSRAIAEYHQRTSLAGPHRDD 297

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           +     +      +GS G+Q+ +++ + LA   LI    G  P+LLLD++ A LD  ++N
Sbjct: 298 IDFSI-NHTPARQYGSQGQQRTLVLALKLAELELIEAVIGEPPLLLLDDVLAELDLKRQN 356

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDS-LNETAKFMRISNHQAL 373
            L   + D   Q  +T T    FD+   E ++ + +     L
Sbjct: 357 QLLETIED-RFQTLITTTHLGAFDAKWLEQSQILTVHQGALL 397


>gi|153826430|ref|ZP_01979097.1| recF protein [Vibrio cholerae MZO-2]
 gi|149739816|gb|EDM54011.1| recF protein [Vibrio cholerae MZO-2]
          Length = 311

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 63/316 (19%), Positives = 128/316 (40%), Gaps = 12/316 (3%)

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDE 115
           + +    + +      F      E         + +     R     ++I     + + +
Sbjct: 1   KSSLTGRIIQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQ 60

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L + L +  + P    + +    +RR F+D  VF  +P        F+RL + RN LL  
Sbjct: 61  LAQILPLQLIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKS 120

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
                   S  + ++A L  +I+  R   +N L   + E + +   P   + L  +   +
Sbjct: 121 AQSYRE-LSYWDQELARLAEQIDQWRESYVNQL-KNVAEQLCRTFLPEFDIDLKYYRGWE 178

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            DQ        Y   L    + D     T  GP+++DL +      +     S G+ K++
Sbjct: 179 KDQP-------YQSILEKNFERDQQLGYTFSGPNKADLRIKVNATPVEDVL-SRGQLKLM 230

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSV 354
           +  + +A  + ++  TG   I L+D+ ++ LD  +R  L   +   G+Q+F++  T+  V
Sbjct: 231 VCALRVAQGQHLTELTGKQCIYLIDDFASELDSLRRQRLADSLKGTGAQVFVSSITESQV 290

Query: 355 FDSLNETAKFMRISNH 370
            D L+E++K   +++ 
Sbjct: 291 ADMLDESSKTFHVAHG 306


>gi|289207190|ref|YP_003459256.1| DNA replication and repair protein RecF [Thioalkalivibrio sp.
           K90mix]
 gi|288942821|gb|ADC70520.1| DNA replication and repair protein RecF [Thioalkalivibrio sp.
           K90mix]
          Length = 357

 Score =  230 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 77/365 (21%), Positives = 134/365 (36%), Gaps = 15/365 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L     RN +             VG NG GKT++LEA   L+ GR FR      V R
Sbjct: 2   LEGLWWRGVRNLSEQTFEPGEGINRLVGPNGAGKTSVLEACHVLAAGRSFRTPQLRRVVR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G    +      +   G   + +  E       R  +++   +     + + L +  L 
Sbjct: 62  SGEKGLWIGGRVRDLHGGEHRLGVSWE-----GTRRSRLDGRWMEGHASVAEWLPVRVLH 116

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
                + +G   ERRR LD   F     +R     + R    RN  L +G  D       
Sbjct: 117 AGSFDLLTGSPEERRRLLDWGCFHSVRGYRWHWQQWRRSHEQRNAALRKG--DRRAAREF 174

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E  + + G  I  AR   I+       E  +   F          L   +D+        
Sbjct: 175 ERPLVDAGENITQARQAYIDRWEINTSEAARVFGFSQRLGDFQVHLRVGWDRDRS----- 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
            ++ +   R  D       +GP R+D+ + +  +    A  S GEQK ++  +    AR+
Sbjct: 230 LSEAIARSRDSDEERGFGQVGPQRADIDLRFDGR--VAAEASRGEQKRLITALTGGQARM 287

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA-KFM 365
           +    G AP++LLD++ + LD      L   + + G Q+ +T  +  +       + +  
Sbjct: 288 LEREAGRAPVVLLDDVVSELDVAAVEGLMCGLLEFGWQVLVTTVEPHIPGLEGGRSTRLF 347

Query: 366 RISNH 370
            + + 
Sbjct: 348 HVEHG 352


>gi|203287881|ref|YP_002222896.1| DNA replication and repair protein RecF [Borrelia recurrentis A1]
 gi|201085101|gb|ACH94675.1| DNA replication and repair protein RecF [Borrelia recurrentis A1]
          Length = 355

 Score =  230 bits (586), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 149/365 (40%), Gaps = 14/365 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K +    F+N  +  + FD  +  F G+NG GKTNIL+AI  L+    F   +  ++  
Sbjct: 2   VKKIEFFNFKNIENQVINFDFDNIYFCGENGSGKTNILDAIYCLAFASSFLVNTDKELIT 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G   F   + +        +  I L  R+D+  + +++N+ ++R   +L  ++      
Sbjct: 62  YGEREF---YLKCFYQTKEKNGEINLSVRNDK--KEIKVNNSIVRDRRDLILNIPAIIFS 116

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
                   G  M+RR F D+ +  I   +   +  + ++++ RN +L +   D       
Sbjct: 117 NHDIDFIIGTPMKRRWFFDQAMSFISLSYLDSLRKYRKILKQRNLILKQR--DKDLLKIY 174

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
                +  ++I   R   +         Y          L +  F         C  K++
Sbjct: 175 NETFVDCALEITEMRKNFVEHFCRFFQYYCSLIFDVSCNLEIKYFPSVT-----CCSKDK 229

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           + + L    K +  S  TLIGPHR DL     +  +   H STG+ +V+ +   L    +
Sbjct: 230 FFEILCLREKDELYSETTLIGPHR-DLYEILSEHRVFTDHASTGQIRVLALIYRLVQVII 288

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
            ++    +PILL D++   LD  KR  +F I+    SQ F T  D     +        R
Sbjct: 289 FNDKFNMSPILLFDDVFLELDSIKRKKVFEILPK-DSQCFFTFLDDCYDVNRESNFIVYR 347

Query: 367 ISNHQ 371
           ++N +
Sbjct: 348 MNNGR 352


>gi|73666678|ref|YP_302694.1| recombination protein F [Ehrlichia canis str. Jake]
 gi|72393819|gb|AAZ68096.1| RecF protein [Ehrlichia canis str. Jake]
          Length = 372

 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 110/371 (29%), Positives = 180/371 (48%), Gaps = 10/371 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  FRNY++L L   ++  + +G NG GKTNILEAIS LS G G R  +   +  
Sbjct: 9   INNLRLVNFRNYSNLELDTSSKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVNTESMQN 68

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S S +S   ++    G+  I I   +R+++    +  N    +    L+K + I+WL+
Sbjct: 69  STSDSPWSLSYQIHTQNGIYPIVI---SRNNKQRNIIISNKS--QNYITLHKIISITWLI 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P +D IF     ER RF DR+    D ++   +I + +  + R+RLL     D+ W SS+
Sbjct: 124 PQLDHIFLKSQSERLRFFDRITHIFDTKYASYIIKYNKAKQERSRLLHNNSTDNFWLSSL 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E+ +AE G+ I   R  ++  L S + +      F    + +   +    DQ      E 
Sbjct: 184 ESIIAENGINIARTRFNVMQILQSSLSQNSHSNAFFKAVIKIQSQVFDLLDQEDS--IEL 241

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           Y + L   R  DS+S     G H  +  + + +K +   + STGEQK++L+ + L+    
Sbjct: 242 YKEHLKKNRAKDSLSNLVSFGVHNDNFQIFHLEKTLIANNCSTGEQKILLLSLILSSVIA 301

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNETAKF 364
                G  PILLLD++ +HLD   +  L   + +I  Q+++T  D  +  F    E  KF
Sbjct: 302 -KQNIGEYPILLLDDVMSHLDAFHQEKLIETIINIKCQVWLTDIDLTQQNFAKYREYFKF 360

Query: 365 MRISNHQALCI 375
             I N+ A+ +
Sbjct: 361 FHIINNTAILL 371


>gi|294790226|ref|ZP_06755384.1| RecF protein [Scardovia inopinata F0304]
 gi|294458123|gb|EFG26476.1| RecF protein [Scardovia inopinata F0304]
          Length = 422

 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 143/388 (36%), Gaps = 44/388 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  +R++ +  +       +  G NG+GKTNI+EAI FLS     R  S   +
Sbjct: 1   MYISRLALDHYRSWNTCLIDLTDSVNVLYGHNGLGKTNIVEAIEFLSTSSSHRVNSSQPL 60

Query: 65  TRIG---------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            + G               + S      R E        ++ +  R    VR    + + 
Sbjct: 61  IQRGYKQATIRANLEIPSQAGSSKQGSFRQESARQTERFTVTIPIRGANRVRVNNNSSLY 120

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
           +R   ++   ++     P    + S     RRRFLD     + P +      +  + R R
Sbjct: 121 MR---DIVGQIKTVVFAPEDQWLLSLDPSRRRRFLDDAGIQLIPEYYDLSQKYSHIARQR 177

Query: 170 NRLLTE--------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             LL             D +       Q+   G+ ++  R +++  LS L  E   +   
Sbjct: 178 VALLKNMGSGQRESSADDYTGLEIWTGQLISTGLSLSTMRQKIVEKLSPLFSEIYAQLAG 237

Query: 222 PH--IKLSLTGFLDGKFDQSFC--ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
                +L+        FDQS     L   + ++LF G   +    R LIGPHR DL    
Sbjct: 238 SEHKAQLAYHPSFAEIFDQSDDPFTLISNHFQRLFPG---ELAQGRNLIGPHRDDLDFSL 294

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISN---------TTGFAPILLLDEISAHLDE 328
                   + S GE   + + + +A  +L+S               PIL+LD++ + LD 
Sbjct: 295 HGMPAK-EYASNGEMWTMALALKMALFQLLSENLLSESSVSAGAGKPILILDDVFSQLDT 353

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFD 356
            +R  +    +    Q+ +T   ++   
Sbjct: 354 SRREKIVDF-SQQQEQVLVTAASENDIP 380


>gi|68171576|ref|ZP_00544950.1| recF protein [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658291|ref|YP_506906.1| recombination protein F [Ehrlichia chaffeensis str. Arkansas]
 gi|67999002|gb|EAM85679.1| recF protein [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599748|gb|ABD45217.1| putative DNA replication and repair protein RecF [Ehrlichia
           chaffeensis str. Arkansas]
          Length = 372

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 107/371 (28%), Positives = 176/371 (47%), Gaps = 10/371 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  FRNY +L L   ++  + +G NG GKTNILEAIS LS G G R  +   +  
Sbjct: 9   INNLRLVNFRNYINLELDTSSKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVNTESMQN 68

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S S +S   ++    G+  I+I          +   +     +    L+K   I WL+
Sbjct: 69  SLSNSPWSVSYQMHTQNGIYPIAIS-----RNHNKRAILISNKNQSYTTLHKITSIIWLI 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P +D IF     ER RF DR+    D ++   +I + +  + R++LL     D+ W SS+
Sbjct: 124 PQLDHIFLKSQSERLRFFDRIAHIFDTKYAIHIIKYNKAKQERSKLLYNNSIDNFWLSSL 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E+ +AE G+ I   R  ++  L + + +  +   F    + +   +    DQ      E 
Sbjct: 184 ESIIAENGINIARIRFNVLQTLQNTLSQNSKSHAFFKAIIKIQSQVFNLLDQENS--IEL 241

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           Y + L + R  DS+S     G H  +  + + +K +   + STGEQK++L+ + L  +  
Sbjct: 242 YKEHLKNNRSKDSLSNLVNFGVHNDNFQIFHSEKNLIANYCSTGEQKILLLSLIL-SSVF 300

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD--KSVFDSLNETAKF 364
                G  PILLLD++ +HLD   +  L  I+ DI  Q+++T  D  +  F    E  KF
Sbjct: 301 AKQNIGEYPILLLDDVMSHLDAYHQEKLLEIIRDIKCQVWLTDIDLTQQNFTKHKEYFKF 360

Query: 365 MRISNHQALCI 375
             ++N+ A  +
Sbjct: 361 FHVANNTATLL 371


>gi|332071497|gb|EGI81991.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA41301]
          Length = 255

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 57/254 (22%), Positives = 112/254 (44%), Gaps = 5/254 (1%)

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-F 178
           + +    P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      
Sbjct: 1   MNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKI 60

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D ++ S ++ Q+ + G ++   R++ I  L S   +   + +    +LS++         
Sbjct: 61  DETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNI-T 119

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               L E +   L   R  D   + T +GPHR D+        +  + GS G+ + +++ 
Sbjct: 120 DKQNLSESFKIALEKSRSRDLFKKNTGVGPHRDDISFYING--MDASFGSQGQHRSLVLS 177

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           I LA   L+ + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L
Sbjct: 178 IKLAEIELMESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNL 236

Query: 359 NETAKFMRISNHQA 372
            E      I + +A
Sbjct: 237 PENLSIFTIQDGKA 250


>gi|325912222|ref|ZP_08174619.1| DNA replication and repair protein RecF [Lactobacillus iners UPII
           143-D]
 gi|325475881|gb|EGC79050.1| DNA replication and repair protein RecF [Lactobacillus iners UPII
           143-D]
          Length = 276

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 112/280 (40%), Gaps = 12/280 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++
Sbjct: 1   MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +          A + G     +I   L+       +   IN +  + +      +    
Sbjct: 61  IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D 
Sbjct: 116 FSPEDLSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG---FLDGKFD 237
            + + +  Q+A L  ++   RV  ++ L     +     +     L +     F +    
Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEYKASFPEFDEK 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
            S   + ++        R  +     TL+GPHR DL V  
Sbjct: 236 DSVEKIYKKILLSFEHVRVNEMRLGTTLVGPHRDDLQVFI 275


>gi|300021543|ref|YP_003754154.1| SMC domain protein [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523364|gb|ADJ21833.1| SMC domain protein [Hyphomicrobium denitrificans ATCC 51888]
          Length = 455

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 114/285 (40%), Positives = 160/285 (56%), Gaps = 5/285 (1%)

Query: 93  ETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152
           E       R ++I+         L  +L I W+ P+MD +F+G   ERRRFLDR++   D
Sbjct: 167 ERAPSERGRIVRIDGTAQSGSGVLADYLEIVWVTPAMDGLFTGPGSERRRFLDRLILCFD 226

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
             +R     FER M  RNRLL +G  D S  S  E  MAE GV +  AR+E + A++ ++
Sbjct: 227 HGYRTIAGRFERAMTSRNRLLADGVRDDSQLSGFERVMAETGVAVAAARLEAVAAMAQIV 286

Query: 213 ---MEYVQKENFPHIKLSLTGFLDGKFDQ-SFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
               E      FP     L G ++    + S    ++ YA+ L   R+ D  + RTL GP
Sbjct: 287 GKRRERDPNSAFPWSSFRLEGSIEDSLQRLSAVEAEDLYAQTLRQTRERDRAASRTLDGP 346

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFAPILLLDEISAHLD 327
           HRSDLIV++  K +   H STGEQK +L+G+ LAHA L+     G APILLLDEI+AHLD
Sbjct: 347 HRSDLIVEHGPKGLAARHCSTGEQKALLLGLVLAHAELLTERQEGAAPILLLDEITAHLD 406

Query: 328 EDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
            D+R ALF  +  +G+Q +MTGTDK+ F++L   A+F  +   + 
Sbjct: 407 ADRRAALFDEILHLGAQAWMTGTDKNAFEALAGRARFWAVQEGKI 451



 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 3/113 (2%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           +N + ++ L ++ FR+YA+  +  DA   + VG NG GKTN+LEA+S LSPG+G RR  +
Sbjct: 6   SNALWVERLQLTNFRSYAAANVATDAGPQVIVGANGSGKTNLLEALSLLSPGQGLRRVPF 65

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           +D+ R G    F+  AR   + G  DI   L      +VR L  +D ++    
Sbjct: 66  SDLVRSGGDGGFAVAARAHTLAGATDIGTGLRA---TTVRSLSGDDDLLSSPS 115


>gi|283782560|ref|YP_003373314.1| DNA replication and repair protein RecF [Gardnerella vaginalis
           409-05]
 gi|283442151|gb|ADB14617.1| DNA replication and repair protein RecF [Gardnerella vaginalis
           409-05]
          Length = 433

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 144/391 (36%), Gaps = 43/391 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  FR++  +   F+    +  G+NG+GKTNI+EA+     G   R +S   +
Sbjct: 1   MYISRIALDTFRSWNHIICDFNPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPL 60

Query: 65  TRIG---------------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
            + G                     + +  S  A +E         I L  +        
Sbjct: 61  IKKGYEKSIIRINTINNDINYKKDETNTGLSNIASLESNLNQTTYEIDLYVKGSN---RA 117

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            IN      V ++   L I    P    +  G    RR F+D+    + P + + + +F+
Sbjct: 118 HINSGKALYVKDIVGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLIPNYVQLLQEFK 177

Query: 164 RLMRGRNRLLTEGY--------FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
            + + R  LL               S       +  E G+ +  AR E +  ++      
Sbjct: 178 HISKQRAALLKNIRDFSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVQIINKYFKNI 237

Query: 216 VQ----KENFPHIKL-SLTGFLDGKFDQSFCALKEEYAKKLFDGRKM----DSMSRRTLI 266
           ++    +EN   I + S    L  K        K E   K+ +  +     +      LI
Sbjct: 238 IKSFTNEENTEIIYVPSFEEVLFEKKSDENIEDKNELFSKISEHFQRIYDGELARGCNLI 297

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
           GPHR D+     + +      S GE   + +   +A  + +       PI++LD++ A L
Sbjct: 298 GPHRDDIDFAINNISAK-DFASNGESWTIAIASKMALCKALEEKNNDKPIVILDDVFAQL 356

Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           DE++R  +     +   Q+F+T +  S   +
Sbjct: 357 DENRRIRILNFALN-QGQVFITTSSLSDIPN 386


>gi|298253029|ref|ZP_06976821.1| RecF pathway recombinational DNA repair ATPase [Gardnerella
           vaginalis 5-1]
 gi|297532424|gb|EFH71310.1| RecF pathway recombinational DNA repair ATPase [Gardnerella
           vaginalis 5-1]
          Length = 433

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 144/391 (36%), Gaps = 43/391 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  FR++  +   F+    +  G+NG+GKTNI+EA+     G   R +S   +
Sbjct: 1   MYISRIALDTFRSWNHIICDFNPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPL 60

Query: 65  TRIG---------------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
            + G                     + +  S  A +E         I L  +        
Sbjct: 61  IKKGYEKSIIRINTINNDINYKKDETNTGLSNIASLESNLNQTTYEIDLYVKGSN---RA 117

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            IN      V ++   L I    P    +  G    RR F+D+    + P + + + +F+
Sbjct: 118 HINSGKALYVKDIVGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLIPNYVQLLQEFK 177

Query: 164 RLMRGRNRLLTEGY--------FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
            + + R  LL               S       +  E G+ +  AR E +  ++      
Sbjct: 178 HISKQRAALLKNIRDFSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVKIINKYFKNI 237

Query: 216 VQ----KENFPHIKL-SLTGFLDGKFDQSFCALKEEYAKKLFDGRKM----DSMSRRTLI 266
           ++    +EN   I + S    L  K        K E   K+ +  +     +      LI
Sbjct: 238 IKSFTNEENTEIIYVPSFEEVLFEKKSDENIEDKNELFSKISEHFQRIYDGELARGCNLI 297

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
           GPHR D+     + +      S GE   + +   +A  + +       PI++LD++ A L
Sbjct: 298 GPHRDDIDFAINNISAK-DFASNGESWTIAIASKMALCKALEEKNNDKPIVILDDVFAQL 356

Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           DE++R  +     +   Q+F+T +  S   +
Sbjct: 357 DENRRIRILNFALN-QGQVFITTSSLSDIPN 386


>gi|297193293|ref|ZP_06910691.1| recombination protein F [Streptomyces pristinaespiralis ATCC 25486]
 gi|297151726|gb|EDY62300.2| recombination protein F [Streptomyces pristinaespiralis ATCC 25486]
          Length = 286

 Score =  225 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 75/276 (27%), Positives = 121/276 (43%), Gaps = 16/276 (5%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            + + +  L++++FR+YA + +  D   T FVG NG GKTN++EA+ +L+     R +S 
Sbjct: 10  AHTMHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLASHRVSSD 69

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           A + R+G+       A  +G        ++LE    R+ R        +R  D L   +R
Sbjct: 70  APLVRMGADRAVIRAAVTQGERSQL---VELELNPGRANRARINRSSQVRPRDVL-GIVR 125

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY---- 177
                P    +  G   ERRRFLD +V A  PR      D+ER+++ RN LL        
Sbjct: 126 TVLFAPEDLSLVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARR 185

Query: 178 -----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                 D S     +  +A  G ++   R+++I AL  L  +  +        ++L    
Sbjct: 186 HGGRGMDLSTLDVWDQHLARAGAEVTAQRLDLIAALQPLADKAYEALAPGGGPVALEYRS 245

Query: 233 D-GKFDQSF--CALKEEYAKKLFDGRKMDSMSRRTL 265
             G  DQ+    AL E+    L + RK +     TL
Sbjct: 246 SAGPMDQAHGREALFEQLTAALAEVRKQEIERGVTL 281


>gi|317499298|ref|ZP_07957571.1| DNA replication and repair protein RecF [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893467|gb|EFV15676.1| DNA replication and repair protein RecF [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 267

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 61/272 (22%), Positives = 119/272 (43%), Gaps = 13/272 (4%)

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
           I+ + IR   +L   + +    P   +I      ERR+FLD  +  ++  +  ++ ++ +
Sbjct: 3   IDRIPIRRSSDLLGQIPVILFSPEDLKIVKSGPSERRKFLDIELSQMERLYLYQLTNYNK 62

Query: 165 LMRGRNRLLTEGYFDSSW---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           ++  RN LL +  F ++      + + Q+ + G ++   R + I  L  +  +   K   
Sbjct: 63  ILVQRNNLLKQIRFQNNLIETLEAWDIQLVKYGSEVIKYREKFIKHLGEVCQKIHNKLTG 122

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
              K+ L    D  +D         Y  +L   R+ D     T +GPHR D+        
Sbjct: 123 GKEKILLEYDRDVGYD--------SYLTELAKKRQKDLKYSTTTVGPHRDDISFIVNGID 174

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
           I   +GS G+Q+   + + LA  +L+      +PILLLD++ + LD +++  L   + D 
Sbjct: 175 IR-KYGSQGQQRTAALSLKLAQIQLMREVMKESPILLLDDVLSELDSNRKTYLLESIKDT 233

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
            + I  TG D+ +   L    +  +I   + +
Sbjct: 234 QTIITCTGLDEFISKHLP-IQRMFQIKAGKIV 264


>gi|309799251|ref|ZP_07693499.1| DNA replication and repair protein RecF [Streptococcus infantis
           SK1302]
 gi|308117096|gb|EFO54524.1| DNA replication and repair protein RecF [Streptococcus infantis
           SK1302]
          Length = 214

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 6/206 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L+I +FRNY    + F+ +  +FVG N  GKTN+LE+I FL+  R  R  +  ++
Sbjct: 1   MWLKKLSIKQFRNYQDTEIEFNPKLNVFVGRNAQGKTNLLESIYFLALTRSHRTKTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +           +V G+      ++ LE       R  ++N +    + +   H+ +  
Sbjct: 61  IQFEEQQL-----QVSGILQKRTTTVPLEIDLTPKGRITKVNHLKQARLSDYIGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-YFDSSWC 183
             P   ++  G    RR+F+D  +  I P +   +  +  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLVKGAPAIRRKFIDMELGQIKPIYLSDLSSYNHVLKQRNTYLKSANQIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMINALS 209
           S ++ Q+ + G ++ + R E I   S
Sbjct: 176 SVLDDQLVDYGCRVMVHREEFIKKWS 201


>gi|312878755|ref|ZP_07738555.1| DNA replication and repair protein RecF [Aminomonas paucivorans DSM
           12260]
 gi|310782046|gb|EFQ22444.1| DNA replication and repair protein RecF [Aminomonas paucivorans DSM
           12260]
          Length = 352

 Score =  224 bits (572), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 89/369 (24%), Positives = 151/369 (40%), Gaps = 22/369 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ + L +  +RN     + +     + +G NG GKTN+LEA+  L+    F     A V
Sbjct: 1   MRFRDLEVHRYRNLEDREITWSPGINVLLGPNGAGKTNLLEAMDLLAGWGPF-GDRPASV 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                        R+EG E        + +   R    L+     +R   ++   L +  
Sbjct: 60  VPWEGSGDTWVRGRLEGEE------TAVASVQVRGRTLLRWGGSPVR-ATQMRTSLPVLA 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    +  G + +RRR LD++   + P +  R+ D+ R +R R   L  G  D     
Sbjct: 113 FLPDSLSVVEGSASQRRRLLDQVGALVYPPYALRLHDYRRALRQRTACLRRGERDDLVLR 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
                +A LGV +  AR ++   L+S +       + P ++L       G  + S    K
Sbjct: 173 V----LAPLGVWLWRAREDVARRLASRLEGVGPLLSAP-LELRYHRGGGGWEEDS----K 223

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E++ + L   R  + +SR  L+GP R DL+     K       S G ++   V + LA A
Sbjct: 224 EDFRRGLLRHRDRERLSRTPLVGPQRDDLVF-LSGKIPAAERFSRGHRRRAAVALMLASA 282

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            ++ +     P+LLLDE++A LD + +  LF  +   G Q+F    D             
Sbjct: 283 GVVRDALRRDPVLLLDEVTAELDGEGKGILFSSLEATGWQVFAATADADAP----LPGAV 338

Query: 365 MRISNHQAL 373
            RI   +  
Sbjct: 339 YRIEGGKVF 347


>gi|42525748|ref|NP_970846.1| DNA replication and repair protein RecF [Treponema denticola ATCC
           35405]
 gi|41815759|gb|AAS10727.1| DNA replication and repair protein RecF [Treponema denticola ATCC
           35405]
          Length = 360

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 78/369 (21%), Positives = 144/369 (39%), Gaps = 17/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +     +   FRN  +  +   +     VG NG GKTN LEA+   S G  FR  S A +
Sbjct: 1   MPFLSASFYNFRNLENATVDISSPEVFLVGKNGQGKTNFLEALYVSSYGTSFRTRSLAQI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F       E       ISI ++       + +Q N   I+   EL   +    
Sbjct: 61  CTKDEKEFSIRALYKESDNISHTISIIIQD----KKKDIQKNFKKIKNSKELISTIPCIL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                     G    +R F+D+ V   +      ++ + + ++ RN +L +    +S   
Sbjct: 117 FHGDDIEFAVGTPSRKRFFIDQSVSLCNSDFIEVLVKYSKALKSRNVILEQKK--ASLLD 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-CAL 243
           SI+   A L + I   R  ++   +          +  + ++S    ++  +  S     
Sbjct: 175 SIDEIFASLALLITNERKNIVEEYAKHF-------SLIYEEISGVSGVEMVYRPSVKVES 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E+    L + R+ D + R +  GPHR  +     DK       S G+++++ + + +  
Sbjct: 228 EEDLLILLAEKRQNDLIDRTSSTGPHRDRIHF-IKDKKPFTERASNGQRRLISLVLRMIQ 286

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETA 362
           A++ S  TG  PI L+D+I   LD +KR     ++     Q+F T      + +   E  
Sbjct: 287 AKIYSEKTGRKPIFLMDDILLELDPEKRQKFMELLPPYE-QLFCTFLPGEPYKNYQKENT 345

Query: 363 KFMRISNHQ 371
           K   + + +
Sbjct: 346 KIFFVEDGK 354


>gi|297243222|ref|ZP_06927157.1| RecF pathway recombinational DNA repair ATPase [Gardnerella
           vaginalis AMD]
 gi|296888756|gb|EFH27493.1| RecF pathway recombinational DNA repair ATPase [Gardnerella
           vaginalis AMD]
          Length = 433

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 141/391 (36%), Gaps = 43/391 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  FR++  +   F     +  G+NG+GKTNI+EA+     G   R +S   +
Sbjct: 1   MYISRIALDTFRSWNHIICDFKPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPL 60

Query: 65  TRIG-SPSFFST--------------------FARVEGMEGLADISIKLETRDDRSVRCL 103
            + G   S                         + +E         I L  +        
Sbjct: 61  IKKGYEKSIIRINTINNEINYKKDETNTDLNNISSLESNLDKTTYEIDLYLKGSN---RA 117

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            IN      V ++   L I    P    +  G    RR F+D+    + P + + + +F+
Sbjct: 118 HINSGKALYVKDIIGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLVPNYVQILQEFK 177

Query: 164 RLMRGRNRLLTEGY--------FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
            + + R  LL               S       +  E G+ +  AR E +  ++      
Sbjct: 178 HISKQRAALLKNIRDYSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVQIINKYFKNI 237

Query: 216 VQKENFPHIK--LSLTGFLDGKFDQSFCALKE---EYAKKLFDGRKM----DSMSRRTLI 266
           ++          + +  F +  F+++     E   E   K+ +  +     +      LI
Sbjct: 238 IKSFTNEENTGIIYVPSFEEVLFEKNSEENVENKNELFSKISEHFQRIYEGELARGCNLI 297

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
           GPHR D+     + +      S GE   + +   +A  + +       PI++LD++ A L
Sbjct: 298 GPHRDDIDFVINNISAK-DFASNGESWTIAIASKMALCKALEEKNNNKPIVILDDVFAQL 356

Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           DE++R  +     +   Q+F+T +  S   +
Sbjct: 357 DENRRIRILNFALN-QGQVFITTSSLSDIPN 386


>gi|196228820|ref|ZP_03127686.1| DNA replication and repair protein RecF [Chthoniobacter flavus
           Ellin428]
 gi|196227101|gb|EDY21605.1| DNA replication and repair protein RecF [Chthoniobacter flavus
           Ellin428]
          Length = 352

 Score =  223 bits (569), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 145/356 (40%), Gaps = 21/356 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  FR + +  + F       VG N  GKT++LEA   L   +  R    A V +
Sbjct: 13  LRGLKVRHFRCFDAREVEFAPGLNFIVGPNAHGKTSLLEAACILLRLQSPRITRLAHVIQ 72

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F      V+G  G+  +         R  + L +++V  +   E  +  R+ +  
Sbjct: 73  HERRGFV-----VDGYFGVRHLQFYF----SRERKKLALDEVEQKSAREYLEIGRVVYFA 123

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
            S   +  G    RRRFLD +    D  +R+ + D+ER +R RN LL          ++ 
Sbjct: 124 NSDIELVRGSGDGRRRFLDFVATQRDGTYRQALRDYERALRSRNLLLKSSSPRWREIAAF 183

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +  +   G ++  AR ++I  L     +  +  +    +L L     G          E+
Sbjct: 184 DEPLLSAGQRVAAARAKLIEELQPEAEKAHRGISGAREQLQLEYVPGGG---------ED 234

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           +   L      D+  R+T  GPHR D+      +  + +  S G+Q+ +++ + L  ARL
Sbjct: 235 FPATLAAAHNEDARLRQTSAGPHRDDVRFMLNGQ--SSSFASEGQQRTLVLALKLGAARL 292

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +      AP+LLLD+I   L +  R A         +Q  +T T      +  E +
Sbjct: 293 LEQRFESAPVLLLDDIFGEL-DLDRRAALLAALPASAQKIITTTHLDWLPAEAEAS 347


>gi|46200023|ref|YP_005690.1| recF protein [Thermus thermophilus HB27]
 gi|46197650|gb|AAS82063.1| recF protein [Thermus thermophilus HB27]
          Length = 343

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 131/347 (37%), Gaps = 24/347 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++       FRN A          +  VG N  GKT++L  I     G        AD+
Sbjct: 1   MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGE--VPLGLADL 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G    +   A VE   G       LE R     R + +N   +  +  L +      
Sbjct: 59  VRFGEEEAW-LHAEVETELGAYR----LEHRLGPGGREVLLNGKRV-SLRALWELPGSVL 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P       G   ERR +LDR++     R+   +  +E+ +R RN LL  G       S
Sbjct: 113 VSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNALLKAGG---EGLS 169

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++A  G +I   R   +   + ++ E           L L                
Sbjct: 170 AWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLE-----------ETAG 218

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E   + L   R  +    +TL+GPHR DL+     +       S GE K + + + LA  
Sbjct: 219 EGVLRALEASRAEERERGQTLVGPHRDDLVFLLEGRP-AHRFASRGEAKTLALALRLAEH 277

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           RL+    G  P+LL+DE    LDE +R A+      +  Q  + G +
Sbjct: 278 RLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALP-QAILAGLE 323


>gi|297622419|ref|YP_003703853.1| DNA replication and repair protein RecF [Truepera radiovictrix DSM
           17093]
 gi|297163599|gb|ADI13310.1| DNA replication and repair protein RecF [Truepera radiovictrix DSM
           17093]
          Length = 352

 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 73/353 (20%), Positives = 142/353 (40%), Gaps = 17/353 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L    +RN  + R+ F    T  VG N  GK+N+LEA+  L           A+ 
Sbjct: 1   MRLLSLQQLNYRNLNTPRVTFGGGVTAIVGRNAAGKSNLLEAVY-LGLTGELPHGKIAEA 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R+G    F +  ++E   GL+ + + L        + ++++   +R   EL +      
Sbjct: 60  VRLGESEGFVS-VKLEHGGGLSTVQVGL----APGRKTVRLDGQSVRAF-ELARVSAAVL 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +  G    RR +LD ++  +  R+     ++ R++  RN  L    +      
Sbjct: 114 ITPEDAELVHGPPALRRGYLDTLLSRLSLRYALLQREYTRVVEQRNAALKSLPYGDPTLE 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               +   LG +I   R   +  +  +      + +     L ++            A  
Sbjct: 174 VWTERFVALGDEITALRERALARVGEVARASYAEISGDDKPLGVS--------HRAAAQG 225

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L   +  +     T++GPHR DL +     ++  A+GS GE + V + + +A  
Sbjct: 226 VGLRAALAATQHEERARGVTVVGPHRDDLELTLAGHSV-QAYGSRGEARTVALALRVAEY 284

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            L+      AP+LL+D+ +A LD  +R  L ++      Q  ++GT+     +
Sbjct: 285 TLLQEKLREAPVLLIDDFTAELDASRREFLLQLAARAP-QALVSGTEAPPHAA 336


>gi|55980233|ref|YP_143530.1| recombination protein F [Thermus thermophilus HB8]
 gi|55771646|dbj|BAD70087.1| RecF protein [Thermus thermophilus HB8]
          Length = 343

 Score =  222 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 131/347 (37%), Gaps = 24/347 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++       FRN A          +  VG N  GKT++L  I     G        AD+
Sbjct: 1   MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGE--VPLGLADL 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G    +   A VE   G       LE R     R + +N   +  +  L +      
Sbjct: 59  VRFGEEEAW-LHAEVETELGAYR----LEHRLGPGGREVLLNGKRV-SLRTLWELPGSVL 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P       G   ERR +LDR++     R+   +  +E+ +R RN LL  G       S
Sbjct: 113 VSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNALLKAGG---EGLS 169

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + + ++A  G +I   R   +   + ++ E           L L                
Sbjct: 170 AWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLE-----------ETAG 218

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E   + L   R  +    +TL+GPHR DL+     +       S GE K + + + LA  
Sbjct: 219 EGVLRALEASRAEERERGQTLVGPHRDDLVFLLEGRP-AHRFASRGEAKTLALALRLAEH 277

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           RL+    G  P+LL+DE    LDE +R A+      +  Q  + G +
Sbjct: 278 RLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALP-QAILAGLE 323


>gi|224283954|ref|ZP_03647276.1| Recombinational DNA repair ATPase [Bifidobacterium bifidum NCIMB
           41171]
 gi|313141106|ref|ZP_07803299.1| recombination protein RecF [Bifidobacterium bifidum NCIMB 41171]
 gi|313133616|gb|EFR51233.1| recombination protein RecF [Bifidobacterium bifidum NCIMB 41171]
          Length = 420

 Score =  222 bits (565), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 138/394 (35%), Gaps = 62/394 (15%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82
           L       I  G NG+GKTNI+EAI  LS G   R +S   + + G     +  A +E +
Sbjct: 2   LDLTPGINILQGANGLGKTNIVEAIEVLSTGLSHRTSSSVPLVQRG-EHAATIRANIESV 60

Query: 83  -------------------------EGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                                          +++       + R  +IN    R + E+ 
Sbjct: 61  TDPEPADDGVNTSADAVDISDMKPVRQTQTTTLEATIAARGANRA-RINGGQSRYLREIL 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-- 175
             L      P   ++ +G    RR F++++   + P +  R+  F  + + R  LL +  
Sbjct: 120 GTLPTVSFTPEDQQLVAGDPAVRRSFINQVASLLIPGYANRLQSFTHVAKQRAALLKQLG 179

Query: 176 ------GYFDSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--------- 218
                    D++         Q  E GV ++  R  +I  L+        +         
Sbjct: 180 QWQRAGSPIDAALSGLEIWTGQFIEAGVALSRDRQRIIAELNKSFGPLYARLAGVAGDLP 239

Query: 219 ----------ENFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
                     +      +     F +    Q+   L  ++ ++++ G   +      LIG
Sbjct: 240 SNAEIQDAAQDGGEQAAVEYVPSFDEILGTQAPEPLISQHFQRIYPG---EVSRGVNLIG 296

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           P R DL+V            S GE   + + + +A  R +       P+++LD++ A LD
Sbjct: 297 PQRDDLLVTLNGMP-AREFASNGEMWTLALALKMAQYRALCEYFDTRPVVILDDVFAQLD 355

Query: 328 EDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
           E +R  + R       Q+ +T   +S    L   
Sbjct: 356 ESRRTEILRFAAA-QDQVLITAAAESDIPILPAN 388


>gi|332071306|gb|EGI81801.1| DNA replication and repair protein recF [Streptococcus pneumoniae
           GA17545]
          Length = 199

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 46/203 (22%), Positives = 94/203 (46%), Gaps = 6/203 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1   MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         + G+      SI LE    +  R  ++N +    + +   H+ +  
Sbjct: 61  IHFDEEQL-----HLSGLVQKKTGSIPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY-FDSSWC 183
             P   ++  G    RR+F+D  +  I P +   + ++  +++ RN  L      D ++ 
Sbjct: 116 FAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQRNTYLKSAQKIDETFL 175

Query: 184 SSIEAQMAELGVKINIARVEMIN 206
           S ++ Q+ + G ++   R++ I 
Sbjct: 176 SVLDDQLVDYGCRVMNHRLDFIK 198


>gi|325475139|gb|EGC78324.1| DNA replication and repair protein RecF [Treponema denticola F0402]
          Length = 360

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 77/369 (20%), Positives = 144/369 (39%), Gaps = 17/369 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +     +   FRN  +  +   +     VG NG GKTN LEA+   S G  FR  S A +
Sbjct: 1   MPFLSASFYNFRNLENATVDISSPEVFLVGKNGQGKTNFLEALYVSSYGTSFRTRSLAQI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F       E       ISI ++       + +Q N   I+   EL   +    
Sbjct: 61  CTKDEKEFSIRALYKESDNISHTISIIIQD----KKKDIQKNFKKIKNSKELISTIPCIL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                     G    +R F+D+ V   +      ++ + + ++ RN +L +    +S   
Sbjct: 117 FHGDDIEFAVGTPSRKRFFIDQSVSLCNSDFIEALVKYSKALKSRNVILEQKK--ASLLD 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-CAL 243
           SI+   + L + I   R  ++   +          +  + ++S    ++  +  S     
Sbjct: 175 SIDEIFSSLALLITNERKNIVEEYAKHF-------SLIYEEISGVSGVEMVYRPSIKVES 227

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E+    L + R+ D + R +  GPHR  +     DK       S G+++++ + + +  
Sbjct: 228 EEDLLILLAEKRQNDLIDRTSSTGPHRDRIHF-IKDKKPFTERASNGQRRLISLVLRMIQ 286

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL-NETA 362
           A++ S  TG  PI L+D+I   LD +KR     ++     Q+F T      + +   E  
Sbjct: 287 AKIYSEKTGRKPIFLMDDILLELDPEKRQKFMELLPPYE-QLFCTFLPGEPYKNYQKENT 345

Query: 363 KFMRISNHQ 371
           K   + + +
Sbjct: 346 KIFFVEDGK 354


>gi|124026724|ref|YP_001015839.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. NATL1A]
 gi|123961792|gb|ABM76575.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. NATL1A]
          Length = 348

 Score =  221 bits (563), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 148/341 (43%), Gaps = 16/341 (4%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82
           +       I +G NGVGK+N+LE+I  LS  R  R     D+            A +E  
Sbjct: 1   MELTENRLIVIGQNGVGKSNLLESIELLSSLRSHRSNRNQDLIYWDQDQAC-LSAMIED- 58

Query: 83  EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142
               D  + LE       +  + + ++ R +D L   +R          +  G    RR 
Sbjct: 59  ----DQKLSLELNRKGGRKAYKNDKLLNRQID-LIGPMRSVGFSALDLELIRGEPSLRRH 113

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSIEAQMAELGVKI 197
           +LDR+V  ++P +   +  F RL+R R++L      +SS        S + QMA +  +I
Sbjct: 114 WLDRIVQQLEPIYSDLIGRFSRLLRQRSQLWRNLSLESSKDQNILLDSFDMQMALVSTRI 173

Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGR 255
           +  R  +++ L  +   + Q  +    KL +T     K +  +S    +E   ++L + R
Sbjct: 174 HRRRRRILDRLLPIASSWQQHLSNSQEKLDITYLPGSKLEGEESERVWRESIERQLLEMR 233

Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
             + ++    +GPHR D+     D       GS G+Q+ +++ + LA   LI    G AP
Sbjct: 234 SEEEITGNCRVGPHRDDVQFSIND-VDARRFGSAGQQRTIVLSLKLAELELIKMVYGKAP 292

Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           ILLLD++ A LD  ++  L   V     Q  ++ T    F+
Sbjct: 293 ILLLDDVLAELDPKRQLLLLEAVGQK-HQCLISATHLESFE 332


>gi|257455166|ref|ZP_05620404.1| DNA replication and repair protein RecF [Enhydrobacter aerosaccus
           SK60]
 gi|257447499|gb|EEV22504.1| DNA replication and repair protein RecF [Enhydrobacter aerosaccus
           SK60]
          Length = 390

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 165/397 (41%), Gaps = 44/397 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L I  FRN  ++ L   +   +F+G NG GKT++LE+I  LS G+ FR       
Sbjct: 1   MQIIQLAIHHFRNLHTIELQPSS-CNVFLGQNGSGKTSLLESIYLLSRGKSFRHHQPRHY 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G     + FAR+         ++ +    D +   L++N   +     L + L    
Sbjct: 60  IEHGFSD-TTVFARLN-----HGQTVAIAKSQD-ATTQLRLNGQSLVTQSPLAQLLPTLL 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-- 182
           L P         S  RR  LD + F ++       + ++RL++ RN LL +   + S   
Sbjct: 113 LEPVSLAQLEDGSQARREMLDWLGFHVEQSFHPNWLAYQRLLKQRNSLLKQNVGNVSLTS 172

Query: 183 -----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDG 234
                 S+ + Q+++   KI+ AR ++I       +  VQK   +    ++L  T   D 
Sbjct: 173 LQQHELSAWDYQLSQHAEKIHQARADIIEQWQPHFLAQVQKFLPQYAEKLRLRYTPGFD- 231

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV------------DYCDKAI 282
                    +   A  L +    D     T +G HRSD+ V             +    +
Sbjct: 232 --------TEAGLAITLANRLASDIELGYTRMGCHRSDINVVLDLVHTDAAGHKHKQTLL 283

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
                S GE+K++++ + L+   L++      P++L+D+I+A LD D    L   +  + 
Sbjct: 284 ATDMLSRGEKKLLVMALRLSQLPLLNQVD-KVPLVLVDDITAELDNDALMLLLTGLKQVN 342

Query: 343 SQIFMTGTDKSVFDSL----NETAKFMRISNHQALCI 375
           SQ+F+T   + + +S+     +  K  ++       +
Sbjct: 343 SQLFITSLTQDIVESIQKIWQDNIKLFQVEQGSIRQL 379


>gi|78211946|ref|YP_380725.1| DNA replication and repair protein RecF [Synechococcus sp. CC9605]
 gi|97181068|sp|Q3AML2|RECF_SYNSC RecName: Full=DNA replication and repair protein recF
 gi|78196405|gb|ABB34170.1| DNA replication and repair protein RecF [Synechococcus sp. CC9605]
          Length = 364

 Score =  220 bits (562), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 81/358 (22%), Positives = 155/358 (43%), Gaps = 16/358 (4%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN+  L+L       + +G NG+GK+N+LEA+  L   R  R ++  D+ +  +P    
Sbjct: 4   FRNHTVLQLELTQPRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSNDRDLIQWDTPQALI 63

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
                +G        ++LE R     +  +   ++ R +D L   LR          +  
Sbjct: 64  RADVGDGDR------LELELRRQGGRQARRNGKLLDRQLD-LIGPLRCIGFSALDLDLVR 116

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS----SWCSSIEAQM 190
           G    RR++LDR+V  ++P +   M    RL+R R++L  +    S    +   + + QM
Sbjct: 117 GEPALRRQWLDRVVLQLEPVYADLMARLNRLLRQRSQLWRQRQISSGERHALLEAFDVQM 176

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYA 248
           A +  +I+  R   ++ L  +   +    +     L L      + D   +    +    
Sbjct: 177 ALVSTRIHRRRQRALHRLEPIAQRWQTHLSGGTETLELHYKPGSRLDGEDAEEPWRLAIE 236

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           ++L   R+ +       +GPHR ++ +     +     GS G+Q+ +++G+ LA   L++
Sbjct: 237 EQLRQQREEEERLGSCRVGPHRDEIAL-LLGGSPARRFGSAGQQRSLVLGLKLAELELVT 295

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFM 365
              G  P+LLLD++ A LD  ++  L   V +   Q  ++ T    F     + A+ +
Sbjct: 296 QLCGEPPLLLLDDVLAELDPTRQQLLLEAVGE-SHQCLVSATHLEGFGGGWQQQAQIL 352


>gi|260890885|ref|ZP_05902148.1| RECF protein [Leptotrichia hofstadii F0254]
 gi|260859438|gb|EEX73938.1| RECF protein [Leptotrichia hofstadii F0254]
          Length = 324

 Score =  220 bits (561), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 143/323 (44%), Gaps = 8/323 (2%)

Query: 22  RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEG 81
           +L FD    +  G NG GKT+++EA+ FL+ G+ FR     +  R  + +    F +   
Sbjct: 4   KLKFDRYFNLIYGKNGQGKTSLIEAVHFLATGKSFRTKKVKE-IRKYNLNRLIVFGKYRH 62

Query: 82  MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR 141
            + L++ +I ++  +D+  +   I+    + +      L I   +P    +  G    RR
Sbjct: 63  KD-LSENAIAIDVNEDK--KDFYIDREKNKYI-NYVGLLNIISFIPEDIELIIGNPGVRR 118

Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
            F +  +      + + +++FE++++ RN+L+ E             +  E G+ I + R
Sbjct: 119 NFFNYEISQAKKEYLQSIVNFEKILKVRNKLIKEKKTGEEIYKIYNEKFIEEGLNIVLNR 178

Query: 202 VEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            E I  LS L+    +K       +KL    FL     ++   LKE++        + + 
Sbjct: 179 REFIKKLSILLNLNYRKLFDENSELKLKYDCFLGDVEKKTREELKEKFEVLCKRKSEREK 238

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
               +L+GP + D I +   K     + S GE+K ++  + ++   ++       PI ++
Sbjct: 239 FLGYSLLGPQKDDFIFELNGKNAKA-YSSQGEKKSIIFSLKISEIDILIKEKKEYPIFIM 297

Query: 320 DEISAHLDEDKRNALFRIVTDIG 342
           D+I+++ DE ++ ++     +  
Sbjct: 298 DDIASYFDEVRKKSILSYFVNKK 320


>gi|310286523|ref|YP_003937781.1| replication and repair protein recF [Bifidobacterium bifidum S17]
 gi|309250459|gb|ADO52207.1| replication and repair protein recF [Bifidobacterium bifidum S17]
          Length = 420

 Score =  219 bits (559), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 77/393 (19%), Positives = 137/393 (34%), Gaps = 60/393 (15%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82
           L       I  G NG+GKTNI+EAI  LS G   R +S   + + G     +  A +E +
Sbjct: 2   LDLTPGINILQGANGLGKTNIVEAIEVLSTGLSHRTSSSVPLVQRG-EHAATIRANIESV 60

Query: 83  EGLADISIKLETRDD------------------------RSVRCLQINDVVIRVVDELNK 118
                    + T  D                        R     +IN    R + E+  
Sbjct: 61  TDPEPADDGVNTSADAVDISDMKPVRPTQTTTLEATIAARGANRARINGGQSRYLREILG 120

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--- 175
            L      P   ++ +G    RR F++++   + P +  R+  F  + + R  LL +   
Sbjct: 121 TLPTVSFAPEDQQLVAGDPAVRRSFINQVASLLIPGYANRLQSFTHVAKQRAALLKQLGQ 180

Query: 176 -----GYFDSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---------- 218
                   D++         Q  E GV ++  R  +I  L+        +          
Sbjct: 181 WQREGSPIDAALSGLEIWTGQFIEEGVALSRDRQRIIAELNKSFGPLYARLAGVAGDLPS 240

Query: 219 ---------ENFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
                    +      +     F +    Q+   L  ++ ++++ G   +      LIGP
Sbjct: 241 NAEIQDAAQDGGEQAAVEYVPSFDEILGTQAPEPLISQHFQRIYPG---EVSRGVNLIGP 297

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
            R DL+V            S GE   + + + +A  + +       P+++LD++ A LDE
Sbjct: 298 QRDDLLVTLNGMP-AREFASNGEMWTLALALKMAQYQALCEYFDTRPVVILDDVFAQLDE 356

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
            +R  + R       Q+ +T   +S    L   
Sbjct: 357 SRRTEILRFAAA-QDQVLITAAAESDIPILPAN 388


>gi|320449208|ref|YP_004201304.1| RecF protein [Thermus scotoductus SA-01]
 gi|320149377|gb|ADW20755.1| RecF protein [Thermus scotoductus SA-01]
          Length = 340

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 145/346 (41%), Gaps = 24/346 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++       FRN A             VG N  GKT++L  I  L+ G   R AS AD+
Sbjct: 1   MRLLVFRQRNFRNLALSAFQPPQGLFALVGGNAQGKTSLLLGIH-LALGGEVR-ASLADL 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G    +   A VE   GL  I    E R     R + +N+  +  +  L++      
Sbjct: 59  IRFGEEEAW-LQAEVETELGLYRI----EQRLRPEGREIVLNEKAV-SLRALHELPGSVL 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           ++P    +  G   ERR FLDR++     R+   +  +E+ +R RN LL  G    +   
Sbjct: 113 VLPEDVEVVLGSREERRTFLDRLIGRFSRRYTALLSAYEKALRQRNALLKAGG---NGLE 169

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A  G +I   R   +     +     +        L +     G          
Sbjct: 170 VWDQELARYGAEIMAFRRRFLRRFLPIFQSVHRSLAPGEAGLLVEETAQG---------- 219

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            E+ + L   R+ + +  +TL+GPHR DL+     + +    GS GE K V + + LA  
Sbjct: 220 -EFLEALRARREEELLKGQTLVGPHRDDLVFLLSGRPV-HRFGSRGEAKGVALALRLAEH 277

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           RL+S   G AP+LL+DE S  LDE KR A+      +  Q  + G 
Sbjct: 278 RLLSEHHGEAPLLLVDEWSEELDEGKRQAVLAYTRTLP-QAILAGL 322


>gi|317050202|ref|YP_004111318.1| DNA replication and repair protein RecF [Desulfurispirillum indicum
           S5]
 gi|316945286|gb|ADU64762.1| DNA replication and repair protein RecF [Desulfurispirillum indicum
           S5]
          Length = 343

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 83/350 (23%), Positives = 144/350 (41%), Gaps = 17/350 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +    +  FR  A   L F        G NG GKT+ LE IS  + G+ FR  +  +  R
Sbjct: 2   LTETRVRNFRCIADAVLSFTPGINALCGVNGSGKTSFLEVISICANGKSFRTNTLRECVR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            GS  F  T           D  I       ++VR L I +     + +      +  L 
Sbjct: 62  KGSDGFSLTL--------ENDRHILQTFLLHKNVRRLLIGEHRPERLSQYININTVLVLS 113

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    + +  S  RR+F+DR VF   P +   +    R+++ RN LL +   D S     
Sbjct: 114 PEDIDLVAHSSGMRRKFIDRGVFEQHPEYLSTLSYLHRILKNRNALLRQK--DHSTLPYW 171

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
              + +  ++I+  R +    L   +   + + ++P   +S+T    G  + +     + 
Sbjct: 172 NDLLCQYALQIHEYRKKYTQQLQLSVNSIISQMDYPK-GISITYINSGDDEYTDT---QA 227

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           + + L      +     TLIGPH+ ++ V   D+     + S G+QK+V + + LA A L
Sbjct: 228 FLRALEKKYSDEKRYGYTLIGPHKDEITVTI-DELSAGKYASYGQQKMVAMIMKLAQAEL 286

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           I       P+LL+D+++A LD      +  I+     Q+ +T  +     
Sbjct: 287 IQQHQKE-PVLLVDDLAAGLDAAALKRVAAILQSYQ-QVILTTIEGENLP 334


>gi|301165374|emb|CBW24945.1| putative DNA replication and repair protein RecF [Bacteriovorax
           marinus SJ]
          Length = 370

 Score =  219 bits (557), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 73/358 (20%), Positives = 157/358 (43%), Gaps = 18/358 (5%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-V 64
           KI  L ++ FRN     + F++     +G+NG GKTNILEA+  LS  + FR+ +     
Sbjct: 5   KISKLQVTNFRNLQPDIIEFNSGINCILGENGNGKTNILEALHVLSTRKSFRKNTAFPQF 64

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             I        F+ V   E    +S+  +  D ++         + R +D     +++ +
Sbjct: 65  LGIDCEQPEIIFSSVFLDEHSNKMSLSAKM-DAKTTHWFVDGQPMKRKLD-----IKLVF 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-TEGYFDSSWC 183
           + P     F   S  RR+++D+ +  ID  +++ +  +   +R RN LL  +        
Sbjct: 119 INPFDSYAFHNTSSFRRQWMDQHISQIDSNYKKCLSRYNSSLRFRNSLLSKKPAKYLEQI 178

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSFC 241
            +I+ ++A     +   R++ ++ + S   +  ++       +K++L   + G       
Sbjct: 179 RAIDLELARYSCILTNTRLKFLSEIESFCTQTFKEIFSEEHLLKITLDSRVIG------- 231

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           A +++  + L +    D +   T    H+ D ++ + D   +  + S G+QK+  + +  
Sbjct: 232 ASEDDIYQMLQERLPKDEIVGHTTYCVHKDDYVLLF-DGLNSFEYCSLGQQKMSYLSLLF 290

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
           A+  L        P++L+D++S  LD+++   L   +     Q+ +T  ++   + L 
Sbjct: 291 AYIELFRYNFNSFPMVLIDDVSGELDKNRWQKLINYLERSSFQVLITTANEKFKEELE 348


>gi|302336552|ref|YP_003801758.1| DNA replication and repair protein RecF [Spirochaeta smaragdinae
           DSM 11293]
 gi|301633737|gb|ADK79164.1| DNA replication and repair protein RecF [Spirochaeta smaragdinae
           DSM 11293]
          Length = 358

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 145/368 (39%), Gaps = 15/368 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +    L   ++RN     +  DA     VG+NG GK+N+LEAI  LS G  FR     ++
Sbjct: 1   MGFLALKTYQYRNLKDAEVCLDAPRVFLVGENGQGKSNLLEAIYLLSFGSSFRTRRDQEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G          + G     DIS  L  ++  + + ++++   +    EL +      
Sbjct: 61  IRRGCGELA-----LHGKTAEHDISFLLSGKNG-TTKSIKLDGKPVTDRKELVRIFPAIV 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    +G    RR F D+ +   +P     +  + ++++ RN  L E   D     
Sbjct: 115 FCHDDISFVNGSPERRRWFFDQTMSLHEPLFIDTLRSYRKILKLRNMALKEDRRD--LLD 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + Q+A  G++I   R E I   ++      +K +    ++ +      K     C  +
Sbjct: 173 VYDIQLARAGMEIQEKRREAIEGFNTTFSSLHEKVSGLEGEMKIAYRPSWKG----CKGE 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+    L   R+ D   + +  GPHR         +  + +  STG+ +++ + + +  A
Sbjct: 229 EDVGVLLHRRRESDLEMKTSGSGPHRDRFAFLLEGRDFS-SIASTGQLRLLSLLLRVGQA 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R      G  P+LLLD++   LD  +R      + +   QIF T      +  L      
Sbjct: 288 RFFYEKCGRRPVLLLDDVLLELDPRRRQRFLGTLPEAD-QIFFTFLPDRQYSELKGNDTM 346

Query: 365 -MRISNHQ 371
            +R+   +
Sbjct: 347 LLRVKEGE 354


>gi|72382983|ref|YP_292338.1| recombination protein F [Prochlorococcus marinus str. NATL2A]
 gi|72002833|gb|AAZ58635.1| DNA replication and repair protein RecF [Prochlorococcus marinus
           str. NATL2A]
          Length = 348

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 147/341 (43%), Gaps = 16/341 (4%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82
           +       I +G NGVGK+N+LE+I  LS  R  R     D+            A +E  
Sbjct: 1   MELTENRLIVIGQNGVGKSNLLESIELLSSLRSHRSNRNQDLIYWDQDQAC-LSAMIED- 58

Query: 83  EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142
               D  + LE       +  + + ++ R +D L   +R          +  G    RR 
Sbjct: 59  ----DQKLSLELNRKGGRKAYKNDKLLNRQID-LIGPMRSVGFSALDLELIRGEPSLRRH 113

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS-----WCSSIEAQMAELGVKI 197
           +LDR+V  ++P +   +  F RL+R R++L      +SS        S + QMA +  +I
Sbjct: 114 WLDRIVQQLEPIYSDLIGRFSRLLRQRSQLWRNLSLESSKDQNILLDSFDMQMALVSTRI 173

Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGR 255
           +  R  +++ L  +   + Q  +     L +T     K +  +S    +E   ++L + R
Sbjct: 174 HRRRRRILDRLLPIASSWQQHLSNSQENLDITYLPGSKLEAEESERLWRESIERQLLEMR 233

Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
             + ++    +GPHR D+     D       GS G+Q+ +++ + LA   LI    G +P
Sbjct: 234 SEEEITGNCRVGPHRDDVQFSIND-VDARRFGSAGQQRTIVLSLKLAELELIKMVYGKSP 292

Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           ILLLD++ A LD  ++  L   V     Q  ++ T    F+
Sbjct: 293 ILLLDDVLAELDPKRQLLLLEAVGQK-HQCLISATHLESFE 332


>gi|328946933|ref|YP_004364270.1| DNA replication and repair protein RecF [Treponema succinifaciens
           DSM 2489]
 gi|328447257|gb|AEB12973.1| DNA replication and repair protein RecF [Treponema succinifaciens
           DSM 2489]
          Length = 373

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 68/378 (17%), Positives = 159/378 (42%), Gaps = 21/378 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +    L+   FRN  +  +   ++   FVG NG GK+N+LE++ + + G  FR    ++V
Sbjct: 1   MPFLSLSPYNFRNLCNENIDLSSKEIYFVGKNGQGKSNLLESLYYSAYGSSFRTHVDSEV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +       S         G +  +          ++ ++ +  ++    EL   +    
Sbjct: 61  IKKNESE-MSLRCLFREENGTSHTT---SIILKEKLKKIEKDGKILHDRKELINTMPCVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                     G    RR F+D+ +   D  +   M  ++R+++ RN  L E ++D     
Sbjct: 117 YSHEDLDFAVGSPERRRFFIDQSLSMYDVLYIDIMRKYKRILKNRNLSLKEKHYD--LLE 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--------- 235
           + + Q+A+ G++I   R + + + + +  +  ++       +S+      K         
Sbjct: 175 TYDFQLAQNGLEIQKKRKDAVFSFNQIFGKLYEQVTGIS-GVSIKYIPSWKNKSDNLNSP 233

Query: 236 -FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            FD++  ++ +     L   R+ + +   ++ GPHR  ++ +  +    +   STG++++
Sbjct: 234 FFDRNIPSV-DYVVDYLSKIREQEKIIGSSISGPHRDKIVFE-KEGIPFVPTASTGQKRL 291

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           + + +    A      T   P+LL+D++   LD +KR  +  ++ +   Q+F T      
Sbjct: 292 IALILRTGQAVFYKQITSRKPVLLMDDVLLELDPEKRQKVTSLLPEYD-QLFCTFLPGEP 350

Query: 355 FDSLN-ETAKFMRISNHQ 371
           + +   E+ +  +I + +
Sbjct: 351 YKNYKRESTRVFKIQDGK 368


>gi|284041474|ref|YP_003391814.1| DNA replication and repair protein RecF [Conexibacter woesei DSM
           14684]
 gi|283945695|gb|ADB48439.1| DNA replication and repair protein RecF [Conexibacter woesei DSM
           14684]
          Length = 370

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 83/354 (23%), Positives = 155/354 (43%), Gaps = 17/354 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  FR+Y +  +   A  T+  G NG GKTN+L+A+ F   GR  R  +  ++
Sbjct: 1   MRIVRLALRNFRSYPTAEVELGAGLTVVSGRNGAGKTNLLDALYFGCTGRSARTTNDREL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G           E  +G  ++S+  E+      + L  + V +  + ++     +S 
Sbjct: 61  VRFGEQ-VTRVVVMTEADDGAHELSVAFESG---QPKRLMADGVRVERLLDVPGRPLVSV 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL---LTEGYFDSS 181
            +P    +  G    RR  +D++V A+ P        + + +  RN L   +  G   ++
Sbjct: 117 FLPDRLELVKGTPSLRRAHIDQVVAALWPARAATRRAYAQALAQRNALVARIRAGGASAA 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSF 240
              + + ++A  GV +   R   I ++ +              +L L G     +  +S 
Sbjct: 177 SLPAWDRELARHGVALMADRAAAIESVQTRFGTIAG-------ELGLDGDPAVAYRPRSR 229

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            A      ++L +    D     T  GPHR DL +   ++    A+GS G+Q++ L+ + 
Sbjct: 230 AADAGGLEEELAERHASDLERGFTQHGPHRDDLALT-RERRELRAYGSQGQQRLTLLALL 288

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           LA    I+ T    P++LLD++ + LD ++R  L  ++  +G Q  +T TD   
Sbjct: 289 LAEREAIAATRDAVPVMLLDDVMSELDRERRGRLVELLRGVG-QSVITTTDLEH 341


>gi|76798667|ref|ZP_00780891.1| DNA replication and repair protein recF [Streptococcus agalactiae
           18RS21]
 gi|76585977|gb|EAO62511.1| DNA replication and repair protein recF [Streptococcus agalactiae
           18RS21]
          Length = 242

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 5/237 (2%)

Query: 137 SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEAQMAELGV 195
              RR+FLD  +  I P +   + ++  +++ RN  L      D ++ + ++ Q+A+ G 
Sbjct: 1   PSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLTVLDEQLADYGS 60

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
           ++   R + I AL+    ++    +     LS+      +F     +++E +  +L    
Sbjct: 61  RVIEHRFDFIQALNDEADKHHYIISTELEHLSIHYKSSIEF-TDKSSIREHFLNQLSKSH 119

Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
             D   + T IGPHR D+     D  I     S G+Q+ +++ + LA   LI   T   P
Sbjct: 120 SRDIFKKNTSIGPHRDDITFFIND--INATFASQGQQRSLILSLKLAEIELIKTVTNDYP 177

Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
           ILLLD++ + LD  ++  L   + +   Q F+T T      +L +  K   +S+   
Sbjct: 178 ILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQLKIFNVSDGTI 233


>gi|254796587|ref|YP_003081423.1| putative DNA replication and repair protein RecF [Neorickettsia
           risticii str. Illinois]
 gi|254589828|gb|ACT69190.1| putative DNA replication and repair protein RecF [Neorickettsia
           risticii str. Illinois]
          Length = 349

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 106/354 (29%), Positives = 162/354 (45%), Gaps = 20/354 (5%)

Query: 5   IK--IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           ++  I  + + +FRN+A     F+ +H +  G NG GKT+ILEAIS LSPG G R AS  
Sbjct: 1   MRPYITEVLLKDFRNHAFWTASFECRHVLLCGKNGAGKTSILEAISKLSPGLGLRSASNT 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++ R GS S +    +  G   L  + +          R  QIN   ++   ++   +++
Sbjct: 61  EMIRSGSLS-WEVSLKFAGSADLRGVGMSY----CEDKRITQINGKSVQCFKKVIDLVKV 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P M  +F+     RRRF DRMV   +P+H   ++ +ER    R ++L  G     W
Sbjct: 116 MWLTPQMSNLFTTDKSVRRRFFDRMVALSEPQHLENLVMYERFKSERLKILNAG-ASKMW 174

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ-SFC 241
               E ++AEL + I  ARV  I  L S          F  +++ L   +    D+    
Sbjct: 175 LDVNEKKLAELCIAITDARVSFIRQLMSNF----PSRGFGSLEIKLLCPVASAIDKVGSS 230

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
              +     L   R +D+++ +   G HR+D +        T    STGEQK++++GI L
Sbjct: 231 QQMQSIQSALERSRAVDTVTGKMQFGVHRTDFLATVRQGDNTARCYSTGEQKLLILGIML 290

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           A             I+LLD+I AHLD    +A     T    Q F +  D S F
Sbjct: 291 AAGE-------LIDIILLDDIFAHLDPQNSSAFLLEATKKNCQFFFSDLDNSKF 337


>gi|254431064|ref|ZP_05044767.1| DNA replication and repair protein RecF [Cyanobium sp. PCC 7001]
 gi|197625517|gb|EDY38076.1| DNA replication and repair protein RecF [Cyanobium sp. PCC 7001]
          Length = 391

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 85/371 (22%), Positives = 169/371 (45%), Gaps = 15/371 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ L + +FRN   L L  +A   + +G NG GK+N+LE +  L   R  R  S  D+ 
Sbjct: 24  RLERLELLQFRNITRLELNLEASRLLVLGPNGEGKSNLLEGVELLGSLRTHRTGSDRDLI 83

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           + G      + AR+ G+    ++ ++LE R  R  R  + N   +    +L   LR    
Sbjct: 84  QQGC-----SHARIRGLTARGEL-LQLELRH-RGGREARRNGKPLERQLDLLGDLRCVSF 136

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFDSSW 182
                 +  G    RR++LDR+V  ++P +   +  + RL+R R++LL     G   +  
Sbjct: 137 SALDLELVRGEPAGRRQWLDRVVLQLEPLYGELLSRYGRLLRQRSQLLRRGLGGGEQAGL 196

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFDQSF 240
             + + QMA +G +++  R   +  L  L   + Q+ +     + ++       + D++ 
Sbjct: 197 LDAFDQQMAVVGTRLHRRRHRALQRLEPLAAHWQQRLSGGRDALAIAYRSGTHLEGDEAE 256

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              +     +L   R  +    +  +GPHR ++ +    +     +GS G+Q+ +++ + 
Sbjct: 257 EPWRAALHSQLAAQRDTELRLGQCSVGPHRDEVALSLGGQP-ARRYGSAGQQRTLVLALK 315

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LN 359
           LA   L+ +  G  P+LLLD++ A LD  ++  L   V + G Q  ++ T    F +   
Sbjct: 316 LAELELVRSVVGDPPLLLLDDVLAELDPTRQQLLLEAVGE-GHQCLVSATHLGAFSAGWQ 374

Query: 360 ETAKFMRISNH 370
           + ++ + +   
Sbjct: 375 QRSQIVHLRAG 385


>gi|260434638|ref|ZP_05788608.1| DNA replication and repair protein RecF [Synechococcus sp. WH 8109]
 gi|260412512|gb|EEX05808.1| DNA replication and repair protein RecF [Synechococcus sp. WH 8109]
          Length = 345

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 144/341 (42%), Gaps = 16/341 (4%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
            +G NG+GK+N+LEA+  L   R  R ++  D+ +  +P           + G   + +K
Sbjct: 2   VIGPNGIGKSNLLEAVELLGSLRSHRCSNDRDLIQWDAPEALIRA----DVGGGDRLELK 57

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           L     R  +    N  ++    +L   LR          +  G    RR++LDR+V  +
Sbjct: 58  LRRHGGRQAKR---NGKLLDRQLDLIGPLRCIGFSALDLDLVRGEPALRRQWLDRVVLQL 114

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDS----SWCSSIEAQMAELGVKINIARVEMINA 207
           +P +   M    RL+R R++L  +    S    +   + + QMA +  +I+  R   ++ 
Sbjct: 115 EPVYADLMARLNRLLRQRSQLWRQRQVSSGERHALLDAFDVQMALVSTRIHRRRQRALHR 174

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKMDSMSRRTL 265
           L  +   +    +     L L      K D   +    +    ++L   R  +       
Sbjct: 175 LEPIAQRWQAHLSGGTEALELHYKPGSKLDGEDAEEPWRLAIEEQLRQQRGEEERLGSCR 234

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           +GPHR ++ +     +     GS G+Q+ +++G+ LA   L++   G  P+LLLD++ A 
Sbjct: 235 VGPHRDEIAL-LLGGSPARQFGSAGQQRSLVLGLKLAELELVTQLCGEPPLLLLDDVLAE 293

Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFM 365
           LD  ++  L   V +   Q  ++ T    F     + A+ +
Sbjct: 294 LDPTRQQLLLEAVGE-SHQCLVSATHLEGFGGGWQQQAQIL 333


>gi|289523931|ref|ZP_06440785.1| putative DNA replication and repair protein RecF [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502587|gb|EFD23751.1| putative DNA replication and repair protein RecF [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 354

 Score =  215 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 154/367 (41%), Gaps = 18/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +         ++N   +R+ +     + VG N  GKTN LEA+S L      +R    D+
Sbjct: 1   MWFSQTYWLNYKNLKPVRISWHKGLNVVVGPNASGKTNTLEALSMLCGWGQVQRGKLRDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               SP     +++  G E   +IS+ +  +D R++               L  H+    
Sbjct: 61  VNWDSPGQARLYSQFNGEE---NISVVVSIQDKRTISVA----GKQCSASTLRLHVPCLS 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                 R+  G    RR FL+ +   I P + RR+ D+ +L+R +N +L  G +D +   
Sbjct: 114 FWSDDVRLIEGSPAIRRNFLNHLCATIVPLYARRLYDYRKLLRHKNYILRAGRYDDAVIK 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +    MA +   +   R  +++ L   + E         ++      ++      +    
Sbjct: 174 A----MAPVAAWLWSYRRSIVDLLKVGLKEVSSHL----VEFDFEVDIEEGNKDYYEDPL 225

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E + K L   +K +   + +L+GPHR DL +    +    A  S G+++ + V   +A A
Sbjct: 226 EAFYKSLAFFKKEEIARKVSLVGPHRDDLRITVKGRPAFQAL-SRGQRRKLAVAFMMASA 284

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE-TAK 363
           +++      +PI+LLDE++A LD + +  L + + +   Q+ +T T       + +  AK
Sbjct: 285 KVVEYKLKRSPIILLDEVTAELDREGKEQLIKALFESNWQV-ITATADEQLGYIEDFPAK 343

Query: 364 FMRISNH 370
              I   
Sbjct: 344 VWHICRG 350


>gi|15638998|ref|NP_218444.1| recF protein (recF) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025239|ref|YP_001933011.1| recombination protein RecF [Treponema pallidum subsp. pallidum
           SS14]
 gi|3322258|gb|AAC65001.1| recF protein (recF) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189017814|gb|ACD70432.1| recombination protein RecF [Treponema pallidum subsp. pallidum
           SS14]
          Length = 403

 Score =  215 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 149/337 (44%), Gaps = 18/337 (5%)

Query: 14  EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73
            FRN A   +   +    FVG+NG GKTNILE +   + G  FR  + +++    +    
Sbjct: 56  NFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFRTRTESEL---YATHAR 112

Query: 74  STFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
           S   RV+ M  G    ++++ +++ +  + ++ N   IR   EL   +       +    
Sbjct: 113 SNEYRVKVMYRGEYTHTVQIFSKNGK--KRIEKNLKKIRTKKELISSIPCILFFHNDLDF 170

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
             G    RR FLD+ +   +P +   +  +  L + +NR + E         +++ Q+A 
Sbjct: 171 VVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKEKRV--QLLDALDTQIAT 228

Query: 193 LGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
           +G  +   R +++   + +  +Y ++  +   +++               +  EE    L
Sbjct: 229 VGFDLVQWRTQLVRDFNVIFTKYYERLGDLAQVRIEYKPSWS-------DSSVEEIVHSL 281

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
           +  RK D     ++ GPHR  +      +A+ I   STG++++V + + ++ A   +  T
Sbjct: 282 YKRRKHDLAMGMSMSGPHRDKIHFT-RSQALFIPQASTGQRRLVSLVLRMSQAVFYTGVT 340

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           G  P+LL+D++   LD +KR      +     Q+F T
Sbjct: 341 GKLPVLLMDDVLLELDPEKRERFMMSLPPYD-QLFCT 376


>gi|291059423|gb|ADD72158.1| DNA replication and repair protein RecF [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 357

 Score =  215 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 149/337 (44%), Gaps = 18/337 (5%)

Query: 14  EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73
            FRN A   +   +    FVG+NG GKTNILE +   + G  FR  + +++    +    
Sbjct: 10  NFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFRTRTESEL---YATHAR 66

Query: 74  STFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
           S   RV+ M  G    ++++ +++ +  + ++ N   IR   EL   +       +    
Sbjct: 67  SNEYRVKVMYRGEYTHTVQIFSKNGK--KRIEKNLKKIRTKKELISSIPCILFFHNDLDF 124

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
             G    RR FLD+ +   +P +   +  +  L + +NR + E         +++ Q+A 
Sbjct: 125 VVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKEKRV--QLLDALDTQIAT 182

Query: 193 LGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
           +G  +   R +++   + +  +Y ++  +   +++               +  EE    L
Sbjct: 183 VGFDLVQWRTQLVRDFNVIFTKYYERLGDLAQVRIEYKPSWS-------DSSVEEIVHSL 235

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
           +  RK D     ++ GPHR  +      +A+ I   STG++++V + + ++ A   +  T
Sbjct: 236 YKRRKHDLAMGMSMSGPHRDKIHFT-RSQALFIPQASTGQRRLVSLVLRMSQAVFYTGVT 294

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           G  P+LL+D++   LD +KR      +     Q+F T
Sbjct: 295 GKLPVLLMDDVLLELDPEKRERFMMSLPPYD-QLFCT 330


>gi|329894832|ref|ZP_08270632.1| DNA recombination and repair protein RecF [gamma proteobacterium
           IMCC3088]
 gi|328922726|gb|EGG30060.1| DNA recombination and repair protein RecF [gamma proteobacterium
           IMCC3088]
          Length = 428

 Score =  215 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 91/431 (21%), Positives = 157/431 (36%), Gaps = 73/431 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR---RASYAD 63
           +  + I+  RN A   +   +   +F+GDNGVGKT++LEAI  L  GR FR       A 
Sbjct: 2   LTRIQIANLRNIAMQEIGDLSPVNVFLGDNGVGKTSVLEAIHTLGYGRSFRKQGGQKDA- 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADIS---IKLET----RDDRSVRCLQINDVVIRVVDEL 116
           + R G          V G  G        + +E     R       ++IN   ++ + E+
Sbjct: 61  LVRYGCERLVVFGESVMGGSGSVRGDGQALGVERMGLSRAANGDIQIKINGEKLQRLSEM 120

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              L    +      + +G + ERRR+LD  VF ++   R     +   ++ RN +L   
Sbjct: 121 AFRLPTIAVNSDTFDLLTGGAAERRRYLDWAVFHVEHGFRDVSKRYANALQQRNSILRRI 180

Query: 177 Y--------------FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
                           D    S+    ++ LG ++   R      L  L  + +++    
Sbjct: 181 ANQMRLANPKNSSIDHDPHELSTWTQAVSALGAQVGEYREAQFLVLRDLFEDMLRELGGG 240

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY----- 277
            + + L         +S        A+ L  G+  D     T  GPHR+D+ V       
Sbjct: 241 ALGVKLGY-------RSGWGQGVALAEALEQGQISDMSRGFTQFGPHRADIQVVVGKDVA 293

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARL---------------------------ISNT 310
               +     S G+ K+V++ + LA  R                            ++  
Sbjct: 294 GQARLARDVLSRGQLKLVVLAMKLAQVRFFLHAGSAGTLASKGARTEAGRDPQVQALAPA 353

Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLN-----ET 361
            G    +LLD+I+A  D  +  AL R++ ++    G Q+F T T       L      + 
Sbjct: 354 AGNTLSVLLDDIAAEFDRPRVVALGRLLAEMIMQGGVQVFATSTAIEPLKPLLDAISIDD 413

Query: 362 AKFMRISNHQA 372
            K   + + + 
Sbjct: 414 FKVFHVEHGRI 424


>gi|282856280|ref|ZP_06265561.1| DNA replication and repair protein RecF [Pyramidobacter piscolens
           W5455]
 gi|282585857|gb|EFB91144.1| DNA replication and repair protein RecF [Pyramidobacter piscolens
           W5455]
          Length = 352

 Score =  215 bits (548), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 84/351 (23%), Positives = 149/351 (42%), Gaps = 17/351 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I       FRN  +  + ++    +  G NG GKTNILEA+  ++    F  +  +D 
Sbjct: 1   MRIAQTRFRNFRNLENALIAWEPGLNLLTGANGAGKTNILEALHVVTGWGAFSGSKCSDT 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  S    S  A+  G E  A I   +  R       L+++  + R  D L   +    
Sbjct: 61  VKWQSEGGASLAAQAAG-EREAIIEAVIMARAS-----LRLDGKLCRWGD-LRNCVPSLT 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +PS   +  G    RRRFLD +     P +  ++ ++ ++ + R  LL  G+       
Sbjct: 114 FLPSDMALIEGAPSVRRRFLDLLCALYFPLYAYKLSEYRKITQHRRHLLGLGHS----TR 169

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             E  MA L   I   R+E+I AL   + ++        I L+L     G  D     L 
Sbjct: 170 VTEETMANLSAWIWECRLEVIAALREHLEKWRGLLPR-KIDLNLKRGGSGNAD----DLL 224

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E++ +      + +  S   L+GPHR DL++  C+  +     S G+++   + + +  A
Sbjct: 225 EDFHRSCAILAERERASGLPLVGPHRDDLVIG-CEGRLASEVLSRGQRRRAALALVMGAA 283

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
             +      +P+LL DE+++ LDE  R  L   +     Q+F    + ++ 
Sbjct: 284 SAVERRGRASPVLLFDEVASELDEAGRTVLMECLQHSRWQVFAATAESALP 334


>gi|317968796|ref|ZP_07970186.1| recombination protein F [Synechococcus sp. CB0205]
          Length = 392

 Score =  215 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 86/374 (22%), Positives = 170/374 (45%), Gaps = 15/374 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L + +FRNY +L L  +A   + +G NG GK+N+LEA+  L   R  R +S  D+ 
Sbjct: 25  RLHRLELRQFRNYGALSLTLEAPRLLVIGRNGEGKSNLLEAVELLGSLRSHRCSSDRDLI 84

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           + G              +G   + ++L  +  R     + N  V+    EL   LR    
Sbjct: 85  QQGERQGLIAA----DCDGGDRLELELRRQGGR---QARRNGKVLERQHELIGPLRCVGF 137

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS---W 182
                 +  G    RR++LDR+V  ++P +   +  + RL+R R++LL  G+  +     
Sbjct: 138 SALDLELVRGEPALRRQWLDRVVLQLEPVYAELLSRYGRLLRQRSQLLRRGFPQAQLEGL 197

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSF 240
             + + QMA +G +++  R+  +  L  L   +  + +     L L      +   +++ 
Sbjct: 198 LDAFDQQMALIGTRLHRRRLRALRRLEPLAQAWQHRLSDGRELLGLRYCPGSQLEGEEAE 257

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              ++  A++L   R  +    +  +GPHR ++ ++   +     +GS G+Q+ +++ + 
Sbjct: 258 APWRDALAEQLLLQRPQELRLGQCSVGPHRDEVAMELGGQP-ARRYGSAGQQRTLVLALK 316

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLN 359
           LA   L+    G  P+LLLD++ A LD  ++  L   V   G Q  ++ T    F+   +
Sbjct: 317 LAELELVHQLWGEPPLLLLDDVLAELDPGRQELLLEAVGQ-GHQCLVSATHLGAFNGGWH 375

Query: 360 ETAKFMRISNHQAL 373
           + ++ + +     L
Sbjct: 376 QGSQVVTVEAGMVL 389


>gi|254995385|ref|ZP_05277575.1| recombination protein F [Anaplasma marginale str. Mississippi]
          Length = 339

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 102/344 (29%), Positives = 164/344 (47%), Gaps = 6/344 (1%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
            +G+NG GKTNILEAIS LS G G R  S A +    S + +S    V  + G A  S+ 
Sbjct: 2   LLGENGSGKTNILEAISLLSKGPGLRNVSAACMQNRESSAPWSVHHAV--LSGNAQCSVS 59

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           +   +++  R L I++    +   L+  L I WL+P +D I      ER RF DR+V   
Sbjct: 60  ITKHENK--RRLLIDEKAG-LYSTLHNMLCIVWLMPQLDHILLKAPSERLRFFDRVVHIF 116

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
           D  +   ++ +E+  R R ++L E   D +W +S+E  MA  GV I   R+  +  L   
Sbjct: 117 DKDYSSHIVRYEKAKRDRRKILREAPQDVNWLTSLENVMAASGVCIARMRLNALEILQKT 176

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           + +      F    + L   +  +  +S       Y ++L + R  D   + T  G H  
Sbjct: 177 MADNDINSPFLKFNIHLDSAV-FELLESQEHAVSRYMQQLGNSRMKDMHGQLTSFGIHND 235

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
              +   DK +  +  STGEQK++L+ + L  A         API+LLD+I +HLD   +
Sbjct: 236 HFQISNADKNLAASDCSTGEQKILLLSLLLTAAVAKRKVHNQAPIMLLDDIMSHLDYTHK 295

Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
             L + + D+G Q ++T  D   F+ L      +RI+++    +
Sbjct: 296 QELVQTIKDVGCQTWITDVDDRNFEGLERHFVRLRITDNSINPV 339


>gi|13959702|sp|O83049|RECF_TREPA RecName: Full=DNA replication and repair protein recF
          Length = 352

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 75/337 (22%), Positives = 149/337 (44%), Gaps = 18/337 (5%)

Query: 14  EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFF 73
            FRN A   +   +    FVG+NG GKTNILE +   + G  FR  + +++    +    
Sbjct: 5   NFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFRTRTESEL---YATHAR 61

Query: 74  STFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI 132
           S   RV+ M  G    ++++ +++ +  + ++ N   IR   EL   +       +    
Sbjct: 62  SNEYRVKVMYRGEYTHTVQIFSKNGK--KRIEKNLKKIRTKKELISSIPCILFFHNDLDF 119

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
             G    RR FLD+ +   +P +   +  +  L + +NR + E         +++ Q+A 
Sbjct: 120 VVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKEKRV--QLLDALDTQIAT 177

Query: 193 LGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
           +G  +   R +++   + +  +Y ++  +   +++               +  EE    L
Sbjct: 178 VGFDLVQWRTQLVRDFNVIFTKYYERLGDLAQVRIEYKPSWS-------DSSVEEIVHSL 230

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
           +  RK D     ++ GPHR  +      +A+ I   STG++++V + + ++ A   +  T
Sbjct: 231 YKRRKHDLAMGMSMSGPHRDKIHFT-RSQALFIPQASTGQRRLVSLVLRMSQAVFYTGVT 289

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           G  P+LL+D++   LD +KR      +     Q+F T
Sbjct: 290 GKLPVLLMDDVLLELDPEKRERFMMSLPPYD-QLFCT 325


>gi|257456817|ref|ZP_05622001.1| DNA replication and repair protein RecF [Treponema vincentii ATCC
           35580]
 gi|257445823|gb|EEV20882.1| DNA replication and repair protein RecF [Treponema vincentii ATCC
           35580]
          Length = 358

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 77/367 (20%), Positives = 149/367 (40%), Gaps = 15/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +    ++   FRN  +  +   A     VG NG GKTN+LEA+   S G  FR  + A++
Sbjct: 1   MPFLSISPYNFRNLENKAIDLSAPEVFLVGQNGQGKTNLLEALYLASYGNSFRTRNEAEI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +  +  +       E  E   +ISI  + +       ++ N   I    +    +    
Sbjct: 61  YKKNTNEYSIRVLFKENEERSHNISIISKDKKK----IIEKNLKKIHDRKDFISTIPCIL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    +G    RR F+D+ +   D  +   + +F +L++ RN +L E    S    
Sbjct: 117 FCHDDLDFATGSPERRRFFIDQSLSLYDSSYIDILRNFTKLLKSRNLVLKEKK--SEILD 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            I+AQ+  +G++I   R  +I + +++     +        + +      K      A  
Sbjct: 175 VIDAQLIPIGLQIMERRRALIESFNNIFSSLYENIGGID-SVMIDYSPSWK-----SANF 228

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +E    L + R++D     ++ GPHR  +     +K   +   S G+Q+++ + +  A A
Sbjct: 229 DEVLISLIEKRQLDFTMNTSMSGPHRDKIRF-VRNKKPFVQTASMGQQRLLSLVLRAAQA 287

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS-LNETAK 363
              + TT   P+LL+D++   LD +KR      +     Q+  T      + + + E + 
Sbjct: 288 YFYTETTKRLPVLLMDDVLLELDPEKRKNFTEHLPQYD-QLICTFLPGEPYQNYIREKSL 346

Query: 364 FMRISNH 370
              +S  
Sbjct: 347 VYIVSEG 353


>gi|67809989|gb|AAY81983.1| recombinase F [Wolbachia pipientis]
          Length = 320

 Score =  213 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 96/332 (28%), Positives = 155/332 (46%), Gaps = 13/332 (3%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
                IK L +  FR++++  L  D    +  G NG+GKTNILEAIS L+   G ++A  
Sbjct: 1   ATHCYIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAKA 60

Query: 62  ADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           +++  R  +  +   +    GM+     SI +    D+  + +QI+         L K  
Sbjct: 61  SEIQNRFSNEDWVVHYDFFNGMDFN---SIGIAKSFDK--KLIQIDGKTQSSYSSLYKIS 115

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            + WL+P MD +      +R +FLDR+V   +  +    +   +  R R++LL E   D 
Sbjct: 116 NVIWLIPQMDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLDK 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W SS+E  MA   V I   R  ++  L   I +    E FP   L  +  L      + 
Sbjct: 176 NWLSSLENIMAVNAVSILRMRSSVLKTLQDTI-DNHSGELFPKASLKFSSQL------TL 228

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               E +  +L + R+ DS++ R   G H  +  V    + + I   STGEQK++L+ I 
Sbjct: 229 DDTAEYFQNRLKENREKDSLTGRVTFGVHNDNFRVFCQKRNVPINLCSTGEQKLLLLSII 288

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           L+  +        AP+LLLD+I +HLD+  R 
Sbjct: 289 LSSVKARCIHYNKAPLLLLDDIMSHLDKHYRK 320


>gi|329847541|ref|ZP_08262569.1| DNA replication and repair protein recF [Asticcacaulis biprosthecum
           C19]
 gi|328842604|gb|EGF92173.1| DNA replication and repair protein recF [Asticcacaulis biprosthecum
           C19]
          Length = 290

 Score =  213 bits (542), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 107/297 (36%), Positives = 157/297 (52%), Gaps = 13/297 (4%)

Query: 77  ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL 136
           AR+   E    ++   + RD R+ R ++I+   +    +L  HLR+ WL P+ DR+F   
Sbjct: 3   ARLHTGEDEVQLATGSDPRD-RAKRTVRIDQQAV-PAAQLLDHLRMIWLTPAQDRLFIEA 60

Query: 137 SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
             +R +F DR+V+A +P H   +  +E+ +R R +LLTEG  D +W + +E ++A  G +
Sbjct: 61  RNDRLKFFDRLVYAAEPGHAAIVAAYEKALRERLKLLTEGPADETWLTVLEHKLAANGAR 120

Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +  AR   + AL + I     +  FP   LSLTG +D         L           R 
Sbjct: 121 MTEARQAAMQALQNEID--GHESAFPKADLSLTGTID------TADLTTALMNGFRHSRD 172

Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
            D  + R+L GPHR DL V + DK    A  STGEQK +L+ I LA     +  + F P+
Sbjct: 173 RDGAAGRSLFGPHRMDLAVVHRDKTRPAADCSTGEQKALLLNIILAQG---ARLSAFKPV 229

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           LLLDE++AHLD  +R+ALF     +G Q F TGTD S+FD L   A  +R+   Q L
Sbjct: 230 LLLDEVAAHLDPLRRHALFDETHALGLQTFFTGTDLSLFDGLLGRALGVRVEAAQIL 286


>gi|315170510|gb|EFU14527.1| DNA replication and repair protein RecF [Enterococcus faecalis
           TX1342]
          Length = 200

 Score =  212 bits (541), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 95/205 (46%), Gaps = 9/205 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  +RNY ++ L F     +F+G+N  GKTN+LE+I  L+  R  R ++  ++
Sbjct: 1   MRLNELTLQHYRNYETVSLDFPKTLNLFLGENAQGKTNLLESIYVLAMTRSHRTSNEKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +     A++ G+      ++ LE       R  ++N +  + +      L +  
Sbjct: 61  IGWEQAA-----AKISGVVEKKTGTVPLEILISNKGRKTKVNHIEQKRLSAYIGQLNVIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RR+F+D  +  + P +   ++ ++ +++ RN+ L +       D+
Sbjct: 116 FAPEDLSLVKGSPQVRRKFIDMELGQVSPIYLYDLVQYQSVLKQRNQYLKQLAEKKQTDT 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMI 205
            +   +  Q+AE G K+  AR+  +
Sbjct: 176 VYLDILTEQLAEFGGKVLYARLGFL 200


>gi|269791622|ref|YP_003316526.1| DNA replication and repair protein RecF [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099257|gb|ACZ18244.1| DNA replication and repair protein RecF [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 354

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 79/371 (21%), Positives = 144/371 (38%), Gaps = 19/371 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +  + + +  +RN     +       +F G NG GKTN+LEA    S   GF R S    
Sbjct: 1   MHFRSIKLYRYRNLEDQAVNLSPGLNLFFGPNGAGKTNLLEAFCAASGWGGFGRPSMIP- 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  S     A V    G  +I+   +         L+I+   +    EL + + +  
Sbjct: 60  -RRGDGSPSPMSAAVAQASGEEEITCAFQFNRRP---LLKIDGSAV-TGSELRRRMPVLA 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    +  G    RRR LD +     P +   +  + R +R R   L  G ++     
Sbjct: 115 FLPDSAALVDGPPSMRRRLLDMVCVLCVPGYGEALTRYRRAVRQRMASLRCGRWEEMTLR 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
                MA   V+I  AR  +   L  L   +  +    H++ S  G  +           
Sbjct: 175 V----MAREAVEIWRARSVVAPRLCQLSQAFASRLGI-HLEASYVGQHESLDRLEPG--- 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             + +     +  +   RR   GPHR D+++     A  +A  S G+++     + +A A
Sbjct: 227 -RFLEAARSIKGEEMTHRRPRFGPHRDDVVLTSGGHAAGLAL-SRGQRRRAFAALVMASA 284

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           +++       P+L++DE+ A +D + R  + R + ++G Q+  +  D        + A  
Sbjct: 285 QVVYKALRRGPVLVMDEVFAEVDREGRTLMARGLVELGVQVLASTAD---LPEAPDGASL 341

Query: 365 MRISNHQALCI 375
            R+ +     +
Sbjct: 342 YRVRSGVVTPV 352


>gi|255020211|ref|ZP_05292280.1| DNA recombination and repair protein RecF [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970353|gb|EET27846.1| DNA recombination and repair protein RecF [Acidithiobacillus caldus
           ATCC 51756]
          Length = 357

 Score =  211 bits (537), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 76/367 (20%), Positives = 146/367 (39%), Gaps = 17/367 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I   R    ++L    +    VG NG GK+ +LEA+  L  G+ +RR     +
Sbjct: 1   MPVAVLEIRNLRCIEHMQLAAGPRWNWLVGANGAGKSTVLEALHLLGLGQSWRRG-PRQL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS  F  +  R E +     I ++     +   R ++     +R    L + L I  
Sbjct: 60  IRDGSSCFLLSVLRNEDLGLNDRIVLE----QNGGERQMRFAGEHLRSQWALLELLPIQA 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +        +G + +RRR LD  ++     +   +  + RL+  RN  L           
Sbjct: 116 IHSGNSEFIAGSADDRRRQLDWGIYRRHREYGDHLRQYRRLLAQRNAWLRSQGHKE---D 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             E  +A  G  ++  R   I  L   +  + ++      ++ L      +         
Sbjct: 173 PWEHLLAGAGELLHEYRSREIAYLQEGLCHFWKERTGSTSEIRLHLQSGWRDGM------ 226

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             +A+ L + R  D+ +  T  GPHR++++     ++   +  S G+ + +     LA  
Sbjct: 227 -RFAEVLREDRSSDAETGFTRSGPHRANILFRVDGRSAADSL-SRGQLRTLGNCFRLAQL 284

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           + I ++    P++L+D+ +A LD   R    + +  +G Q+F  GT+ +      E  + 
Sbjct: 285 QAIKDSGLELPVVLIDDFAAELDPAGRLWWRQQLDALGVQVFAAGTEAAALPMNAEDCQ- 343

Query: 365 MRISNHQ 371
             I   Q
Sbjct: 344 WTIQAGQ 350


>gi|213646832|ref|ZP_03376885.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 258

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 108/266 (40%), Gaps = 11/266 (4%)

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
                + EL   + +  + P    + +G    RR FLD   F  +        + +RL++
Sbjct: 1   TDGHKIAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLK 60

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            RN  L +           + ++  L  +I+  R E  +A++  + +  Q +  P   L+
Sbjct: 61  QRNAALRQ-VSRYEQLRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLT 118

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
            +     + +        +YA  L    + D M   T  GPH++D  +   D A      
Sbjct: 119 FSFQRGWEKET-------DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTL 170

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+ K+++  + LA    ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F+
Sbjct: 171 SRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFV 230

Query: 348 TGTDKSV-FDSLNETAKFMRISNHQA 372
           +        D  +E +K   +   + 
Sbjct: 231 SAISAEHVIDMSDENSKMFTVEKGKI 256


>gi|326571822|gb|EGE21828.1| DNA replication and repair protein RecF [Moraxella catarrhalis BC7]
          Length = 402

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 159/405 (39%), Gaps = 51/405 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I E RN   + L   A   + VG NG GKT++LEA+  LS G+ FR        R
Sbjct: 2   IKQLQIHELRNLKQVNLTLAA-CNLIVGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKHLRIS 123
               S  + +AR +  E     ++ ++ + D + +    L+ N+  +     L+ HL   
Sbjct: 61  HHQ-SACTVWARTKFEE---SCTLAIQKKLDETGKSDSILRFNEHTVSTQSALSFHLPTL 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSS 181
            + P    +    S  RR+ LD + F I P+   + + ++RL++ RN LL     +    
Sbjct: 117 LIDPVSMSLLDEGSTSRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLP 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
              + + Q+      ++  R+ + +  +    E + K+  P    SL+      FD +  
Sbjct: 177 ELFAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQYLAGFDYTKP 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA--------ITIAHGSTGEQK 293
                 ++ L      D     T IG HR+D+ V    +               S GE+K
Sbjct: 236 -----LSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSRGEKK 290

Query: 294 VVLVGIFLAHARLISNTTGF-------APILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           +++  + L+  +L+ +            P++L+D++ A LDED    L + V  +  Q  
Sbjct: 291 LLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLPCQAI 350

Query: 347 MTGTDKSVFDSLNE--------------------TAKFMRISNHQ 371
           +T  +      +                      + K   +   +
Sbjct: 351 ITSLNVQTHQKILALKSDGFMATSAPNQRTAEDLSYKMFHVEQGK 395


>gi|326562314|gb|EGE12640.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           103P14B1]
 gi|326575518|gb|EGE25443.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           101P30B1]
          Length = 402

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 160/405 (39%), Gaps = 51/405 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I E RN   + L   A   + VG NG GKT++LEA+  LS G+ FR        R
Sbjct: 2   IKQLQIHELRNLKQVNLTLAA-CNLIVGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKHLRIS 123
               S  + +AR +  E     ++ ++ + D + +    L+ N+  +     L+ HL   
Sbjct: 61  HHQ-SACTVWARTKFEE---SCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTL 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSS 181
            + P    +    S+ RR+ LD + F I P+   + + ++RL++ RN LL     +    
Sbjct: 117 LIDPVSMSLLDEGSISRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLP 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
              + + Q+      ++  R+ + +  +    E + K+  P    SL+      FD +  
Sbjct: 177 ELFAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQYLAGFDYTKP 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA--------ITIAHGSTGEQK 293
                 ++ L      D     T IG HR+D+ V    +               S GE+K
Sbjct: 236 -----LSQTLKMRFNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSRGEKK 290

Query: 294 VVLVGIFLAHARLISNTTGF-------APILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           +++  + L+  +L+ +            P++L+D++ A LDED    L + V  +  Q  
Sbjct: 291 LLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLPCQAI 350

Query: 347 MTGTDKSVFDSLNE--------------------TAKFMRISNHQ 371
           +T  +      +                      + K   +   +
Sbjct: 351 ITSLNVQTHQKILALKSDGFMATSAPNQRTAEDLSYKMFHVEQGK 395


>gi|326560703|gb|EGE11071.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           46P47B1]
          Length = 402

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 159/405 (39%), Gaps = 51/405 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I E RN   + L   A   + VG NG GKT++LEA+  LS G+ FR        R
Sbjct: 2   IKQLQIHELRNLKQVNLTLAA-CNLIVGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKHLRIS 123
               S  + +AR +  E     ++ ++ + D + +    L+ N+  +     L+ HL   
Sbjct: 61  HHQ-SACTVWARTKFEE---SCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTL 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSS 181
            + P    +    S  RR+ LD + F I P+   + + ++RL++ RN LL     +    
Sbjct: 117 LIDPVSMSLLDEGSTSRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLP 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
              + + Q+      ++  R+ + +  +    E + K+  P    SL+      FD +  
Sbjct: 177 ELFAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQYLAGFDYTKP 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA--------ITIAHGSTGEQK 293
                 ++ L      D     T IG HR+D+ V    +               S GE+K
Sbjct: 236 -----LSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSRGEKK 290

Query: 294 VVLVGIFLAHARLISNTTGF-------APILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           +++  + L+  +L+ +            P++L+D++ A LDED    L + V  +  Q  
Sbjct: 291 LLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLPCQAI 350

Query: 347 MTGTDKSVFDSLNE--------------------TAKFMRISNHQ 371
           +T  +      +                      + K   +   +
Sbjct: 351 ITSLNVQTHQKILALKSDGFMATSAPNQRTAEDLSYKMFHVEQGK 395


>gi|88608256|ref|YP_506094.1| putative DNA replication and repair protein RecF [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600425|gb|ABD45893.1| putative DNA replication and repair protein RecF [Neorickettsia
           sennetsu str. Miyayama]
          Length = 349

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 105/358 (29%), Positives = 158/358 (44%), Gaps = 18/358 (5%)

Query: 5   IK--IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           ++  I  + + +FRN+A     F  +H +  G NG GKT+ILEAIS LSPG G R AS  
Sbjct: 1   MRPYITGVLVKDFRNHAFWTGSFKCRHVLLCGKNGAGKTSILEAISKLSPGLGLRSASNI 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++ R GS S +    +  G   L ++ +          R  ++N   I+   ++   +++
Sbjct: 61  EMVRSGSLS-WEVSLKFAGSTDLREVGMGYY----EDKRVTKLNGKSIQCFKKVIDLVKV 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P M  +F+     RR+F DRMV   +P+H   ++ +ER    R ++L  G     W
Sbjct: 116 MWLTPQMSNLFTTDKSVRRKFFDRMVALSEPQHLENLVMYERFKSERLKILNAG-ASKMW 174

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               E ++AEL + I  ARV  I  L S           P IKL                
Sbjct: 175 LDVNEKKLAELCIAITDARVSFIGQLMSNFPSK--GFGSPEIKL-FCPVASAIGRVGSSQ 231

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             +     L   R +D+++ +   G HR+D +        T    STGEQK++++GI LA
Sbjct: 232 QMQCIQSALERSRAIDTVTGKMQFGVHRTDFLATVRQGDNTARCYSTGEQKLLILGIILA 291

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
                        I+LLD+I AHLD    +A     T    Q F +  D S F     
Sbjct: 292 AGE-------LIDIILLDDIFAHLDLHNSSAFLLEATKKNCQFFFSDLDNSKFAQFAN 342


>gi|326561745|gb|EGE12080.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           7169]
 gi|326563090|gb|EGE13363.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           12P80B1]
 gi|326569034|gb|EGE19103.1| DNA replication and repair protein RecF [Moraxella catarrhalis BC1]
 gi|326571723|gb|EGE21736.1| DNA replication and repair protein RecF [Moraxella catarrhalis BC8]
 gi|326574363|gb|EGE24306.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           CO72]
 gi|326578063|gb|EGE27923.1| DNA replication and repair protein RecF [Moraxella catarrhalis
           O35E]
          Length = 402

 Score =  208 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 160/405 (39%), Gaps = 51/405 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I E RN   + L   A   + VG NG GKT++LEA+  LS G+ FR        R
Sbjct: 2   IKQLQIHELRNLKQVNLTLAA-CNLIVGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKHLRIS 123
               S  + +AR +  E     ++ ++ + D + +    L+ N+  +     L+ HL   
Sbjct: 61  HHQ-SACTVWARTKFEE---SCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTL 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSS 181
            + P    +    S+ RR+ LD + F I P+   + + ++RL++ RN LL     +    
Sbjct: 117 LIDPVSMSLLDEGSISRRQMLDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLP 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
              + + Q+      ++  R+ + +  +    E + K+  P    SL+      FD +  
Sbjct: 177 ELFAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQYLAGFDYTKP 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA--------ITIAHGSTGEQK 293
                 ++ L      D     T IG HR+D+ V    +               S GE+K
Sbjct: 236 -----LSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSRGEKK 290

Query: 294 VVLVGIFLAHARLISNTTGF-------APILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           +++  + L+  +L+ +            P++L+D++ A LDED    L + V  +  Q  
Sbjct: 291 LLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLPCQAI 350

Query: 347 MTGTDKSVFDSLNE--------------------TAKFMRISNHQ 371
           +T  +      +                      + K   +   +
Sbjct: 351 ITSLNVQTHQKILALKSDGFMATSAPNQRTAEDLSYKMFHVEQGK 395


>gi|296112233|ref|YP_003626171.1| DNA replication and repair protein RecF [Moraxella catarrhalis RH4]
 gi|295919927|gb|ADG60278.1| DNA replication and repair protein RecF [Moraxella catarrhalis RH4]
          Length = 402

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 87/405 (21%), Positives = 159/405 (39%), Gaps = 51/405 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I E RN   + L   A   + VG NG GKT++LEA+  LS G+ FR        R
Sbjct: 2   IKQLQIHELRNLKQVNLTLAA-CNLIVGANGSGKTSLLEAVFLLSRGKSFRHHEPKRYIR 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKHLRIS 123
               S  + +AR +  E     ++ ++ + D + +    L+ N+  +     L+ HL   
Sbjct: 61  HHQ-SACTVWARTKFEE---SCTLAIQKKLDETGKSDSILRFNEHTVSTQSTLSFHLPTL 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG--YFDSS 181
            + P    +    S  RR+ LD + F I P+   + + ++RL++ RN LL     +    
Sbjct: 117 LIDPVSMSLLDEGSTSRRQILDWLTFHIQPKFYHQWLQYQRLLKQRNALLKHPSVHHKLP 176

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
              + + Q+      ++  R+ + +  +    E + K+  P    SL+      FD +  
Sbjct: 177 ELFAWDEQLGFYAHALHEHRLAVFDQWTRYFDEMI-KQLLPEYHSSLSLQYLAGFDYTKP 235

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA--------ITIAHGSTGEQK 293
                 ++ L      D     T IG HR+D+ V    +               S GE+K
Sbjct: 236 -----LSQTLKMRLNQDMSLGYTRIGAHRADINVKIHSQNNQGQTIHEQATHILSRGEKK 290

Query: 294 VVLVGIFLAHARLISNTTGF-------APILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           +++  + L+  +L+ +            P++L+D++ A LDED    L + V  +  Q  
Sbjct: 291 LLITALKLSQLKLMCHAIDKIPMQTAHPPVVLIDDLDAELDEDAIEILLKTVFSLPCQAI 350

Query: 347 MTGTDKSVFDSLNE--------------------TAKFMRISNHQ 371
           +T  +      +                      + K   +   +
Sbjct: 351 ITSLNVQTHQKILALKSDGFMATSAPNQRTAEDLSYKMFHVEQGK 395


>gi|78185501|ref|YP_377936.1| recombination protein F [Synechococcus sp. CC9902]
 gi|78169795|gb|ABB26892.1| DNA replication and repair protein RecF [Synechococcus sp. CC9902]
          Length = 353

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/350 (22%), Positives = 149/350 (42%), Gaps = 16/350 (4%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82
           +       + +G NG+GK+N+LEA+  L   R  R +   D+ +  SP         +G 
Sbjct: 1   MELTESRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWDSPMALLRADVGDGD 60

Query: 83  EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142
                  ++LE R     +  +   V+ R +D L   LR          +  G    RR+
Sbjct: 61  R------LELELRRRGGRQARRNGKVLDRQLD-LIGPLRCIGFSALDLDLVRGEPALRRQ 113

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS----WCSSIEAQMAELGVKIN 198
           +LDR+V  ++P +   +  + RL+R R++L      +++       + + QMA +  +I+
Sbjct: 114 WLDRVVLQLEPVYADLISRYNRLLRQRSQLWRSHRLNTAERSGLLDAFDVQMALISTRIH 173

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRK 256
             R   +  L  +   +    +     L L      + D  ++    +    ++L D R+
Sbjct: 174 RRRRRALQRLEPIAQHWQSHLSSGKELLQLHYQPGSRLDGEEAEEPWRLAIEEQLRDQRE 233

Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
            +       IGPHR ++ +   +       GS G+Q+ +++G+ LA   L+    G  P+
Sbjct: 234 DEERLGNCRIGPHRDEINMVLGETP-ARRFGSAGQQRSLVLGLKLAELELVKELCGEPPL 292

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFM 365
           LLLD++ A LD  ++  L   V +   Q  ++ T    F     + A+ +
Sbjct: 293 LLLDDVLAELDPIRQQLLLEAVGN-DHQCLISATHLDGFHGGWRQEAQIL 341


>gi|309805927|ref|ZP_07699959.1| DNA replication and repair protein RecF [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167703|gb|EFO69850.1| DNA replication and repair protein RecF [Lactobacillus iners
           LactinV 03V1-b]
          Length = 246

 Score =  207 bits (527), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 100/249 (40%), Gaps = 9/249 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++
Sbjct: 1   MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +          A + G     +I   L+       +   IN +  + +      +    
Sbjct: 61  IKFN-----MKIAGIHGTLCKRNIRFDLKLLISNKGKKAWINRLEQKKLSNYLGTMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D 
Sbjct: 116 FSPEDLSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            + + +  Q+A L  ++   RV  ++ L     +     +     L +            
Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQKEILDIEYKASFPEFDEK 235

Query: 241 CALKEEYAK 249
            ++++ Y K
Sbjct: 236 DSVEKIYKK 244


>gi|262277740|ref|ZP_06055533.1| putative DNA replication and repair protein RecF [alpha
           proteobacterium HIMB114]
 gi|262224843|gb|EEY75302.1| putative DNA replication and repair protein RecF [alpha
           proteobacterium HIMB114]
          Length = 363

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 89/366 (24%), Positives = 169/366 (46%), Gaps = 10/366 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDA--QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +  +NI  F+++    L      QH I  GDNGVGKTN++E++SF S  +G R  +   +
Sbjct: 4   VTKINIKNFKSHKQYNLEISKDYQHIIIYGDNGVGKTNLIESLSFFSNSKGLRGDTLDKL 63

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                 +    +  A++       + S K+    +   +   + +  I  + ++ + L  
Sbjct: 64  LPEQETNIIDTNIQAKILSNSNQFNFSFKITKDQENLKKTFFLEEKKI-SLPKIKEILSF 122

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            WL P MD+I       +R F+D+++   +      +  +++ +  R ++L     D  W
Sbjct: 123 IWLSPYMDKIMYEGQSIKRDFIDKLISQNEKNFNLSVSSYKKNIAERLQILKN-TKDEKW 181

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              IE ++AE   +I + R    N ++ +I + ++  NF  I +     L    ++    
Sbjct: 182 LDIIEKRLAENIYEIFLMRRNYANKINKIISDKLK--NFREINIKYNNDLFEDLNEKKIK 239

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           + E + +KL   R++D +++RT  G ++  +      K       STGEQK  L+ I LA
Sbjct: 240 I-EIFFEKLKSNRELDEITKRTNFGINKDQIFFFDKIKNRNTDACSTGEQKSSLLTIILA 298

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETA 362
           +   +        ILLLDE ++H+D+     L   +   G+QI+ TGT K++F ++    
Sbjct: 299 NCWKLKIEKKD-FILLLDEATSHIDDQNFGRLVTEIEKFGTQIWYTGTSKNLFQAIENKG 357

Query: 363 KFMRIS 368
            F+ + 
Sbjct: 358 FFIHLE 363


>gi|218295958|ref|ZP_03496738.1| DNA replication and repair protein RecF [Thermus aquaticus Y51MC23]
 gi|218243696|gb|EED10224.1| DNA replication and repair protein RecF [Thermus aquaticus Y51MC23]
          Length = 343

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 132/324 (40%), Gaps = 23/324 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++       FRN A             VG N  GKT +L AI  L+ G   R  +  D+
Sbjct: 1   MRLLAFRQRHFRNLAFSLFRPPPGLLALVGGNAQGKTGLLLAIH-LALGGEVRG-TLEDL 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G    +   A VE   G+     ++E R     R +++N+  +  +  L +      
Sbjct: 59  IRFGEKEAW-LQAEVETELGV----FRVEQRIGLEGREIRLNERPV-GLRALYELPGSVL 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           ++P    +  G   ERR FLD ++     R+   +  +E+ +R RN LL  G       S
Sbjct: 113 ILPEDVEVVLGPKEERRGFLDHLLARFSRRYAALLSAYEKALRQRNALLKTGGNS---LS 169

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             + ++A  G +I + R   +     L     Q      + L L                
Sbjct: 170 VWDQELARYGEEITLLRRRFLKRFLPLFQSVHQTLAPGEVGLRLE-----------ETAP 218

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E   + L   R+ + +  +TL+GPHR DL+     +       S GE K + + + LA  
Sbjct: 219 EGLLQALAARREEERLRGQTLVGPHRDDLVFLLGGRP-AHRFASRGEAKALALALRLAEH 277

Query: 305 RLISNTTGFAPILLLDEISAHLDE 328
           RL+S   G  P+LL+DE S  LDE
Sbjct: 278 RLLSEHHGEPPLLLVDEWSEELDE 301


>gi|93004836|ref|YP_579273.1| DNA replication and repair protein RecF [Psychrobacter
           cryohalolentis K5]
 gi|92392514|gb|ABE73789.1| DNA replication and repair protein RecF [Psychrobacter
           cryohalolentis K5]
          Length = 402

 Score =  204 bits (520), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 81/412 (19%), Positives = 152/412 (36%), Gaps = 59/412 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L IS  RN   + L   A   + +G NG GKT++LEAI  LS G+ FR        +
Sbjct: 2   IERLQISHLRNLTHINLSPAA-CNVIIGANGSGKTSLLEAIFLLSRGKSFRHHQPKRYIQ 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               S  +  A +         ++ ++ + D +   L++N   +     L + L    + 
Sbjct: 61  HYQESA-TIHANLNDSR-----TLAIQKKAD-ATTILRLNQTTVYNQSILTEQLPTLLID 113

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182
           PS   +    S  RR+ LD +VF +      + + ++RL++ RN LL +         + 
Sbjct: 114 PSTMDMLEQGSASRRQLLDWLVFHMKQGFHSQWVAYQRLLKQRNSLLKQRRHLTQVQLAE 173

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             + +  ++     I+  R  +  A      + + +   P     L+   +  +D     
Sbjct: 174 LKAWDKGLSSHAALIHHYRQAIFEAWQPYFSKSIAQL-LPAYAEQLSLSYNAGYDTGIAL 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD----------------------- 279
             +     L +  + D     T IG HR+D+ V +                         
Sbjct: 233 DIQ-----LNERLEQDLQLGYTRIGNHRADIHVHWRSIGSRQIADENLNSPLSADSTVKL 287

Query: 280 ---KAITIAHGSTGEQKVVLVGIFL------------AHARLISNTTGFAPILLLDEISA 324
              K       S GE+K+++  + L            +            P++LLD+I+A
Sbjct: 288 PILKEQAANILSRGEKKLLITALRLSQLPLLLNAKTNSELYNSDAKLSATPVVLLDDITA 347

Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN---ETAKFMRISNHQAL 373
            LD      L   +  +  Q+F+T    S+   ++   E ++   +     L
Sbjct: 348 ELDNKAIEILLSTLAQLPCQVFVTSLTDSILPLVHEYWEKSQVFHMKQGGIL 399


>gi|261416459|ref|YP_003250142.1| DNA replication and repair protein RecF [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261372915|gb|ACX75660.1| DNA replication and repair protein RecF [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302327022|gb|ADL26223.1| putative DNA replication and repair protein recF [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 419

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 76/407 (18%), Positives = 144/407 (35%), Gaps = 71/407 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + IS+ R+  S+   F+    +  G NG GKT ILE+I  L+ G  FR     ++  
Sbjct: 2   ISKVFISKMRSLESMDCNFEPGINVICGPNGCGKTTILESIYLLAQGFSFRSHELRELIT 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                                 ++++ +R       ++ N   ++             + 
Sbjct: 62  WKQNELI-LRGEFYDEGRERMRALRVFSRGSE----VRENGETLKSPAAFFGTCPAVIMQ 116

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------GYFDS 180
           PS   +  G    RRR+LD ++      +   + ++ R+++ RN+ L E           
Sbjct: 117 PSDIELLRGGPDVRRRWLDEILCFRSSANSLALRNYRRVLQQRNKWLKEFKQKGFAVGGE 176

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--HIKLSLTGFLDGKFD- 237
                +  Q+ +LG K+  AR+ +   +S +I  Y +K +     I  +    +    D 
Sbjct: 177 DLFRVLTLQLIDLGAKVWAARLALSKEVSEIITRYYRKLSGGVDEITCAYKSSILKTLDA 236

Query: 238 -QSFCALKEEYA----------------------------------------------KK 250
             +   L +E                                                + 
Sbjct: 237 LDAADPLSDEMMDEIPSGATGAAEGVVEIARGECAECSADGSGNVAGSAADGSDVVSEEM 296

Query: 251 LFDGRKM--------DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L +            + +   T+ GPHR DL +      +  + GS G+ +   V +  A
Sbjct: 297 LRNAFARKLADLEFVERLQGMTMAGPHRDDLALCASGYEMR-SVGSQGQCRSAAVAMRFA 355

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
              + S      PILLLD+I A LD ++R+A+  ++ +   Q+ +  
Sbjct: 356 AVDVASRYL-TKPILLLDDIFAELDVNRRDAVASLIREKECQVVIAT 401


>gi|309804875|ref|ZP_07698937.1| DNA replication and repair protein RecF [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165814|gb|EFO68035.1| DNA replication and repair protein RecF [Lactobacillus iners
           LactinV 09V1-c]
          Length = 241

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 94/230 (40%), Gaps = 9/230 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FRN+  +++ FD+   IF+G N  GKTN+LEAI FL+  +  R +   ++
Sbjct: 1   MYLEDLTLKDFRNFDRVKVNFDSHINIFIGKNAQGKTNLLEAIYFLALTKSHRTSVDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +          A + G     +I   L+       +   IN +  + +      +    
Sbjct: 61  IKFN-----MKIAGIHGTLCKRNIRFDLKLLVSNKGKKAWINRLEQKKLSNYLGTMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDS 180
             P    +  G    RRRF+D     I+  +   +  + ++++ RN  L +       D 
Sbjct: 116 FSPEDLSLVKGSPAFRRRFMDLEFGQINGEYLYFLTRYRQVLQQRNTYLKQISSKKASDP 175

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
            + + +  Q+A L  ++   RV  ++ L     +     +     L +  
Sbjct: 176 IFLNVLTDQLAGLAAEVVHKRVLYLDLLKENAKKAYAFISDQREILDIEY 225


>gi|115378326|ref|ZP_01465492.1| RecF protein [Stigmatella aurantiaca DW4/3-1]
 gi|115364680|gb|EAU63749.1| RecF protein [Stigmatella aurantiaca DW4/3-1]
          Length = 397

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 63/283 (22%), Positives = 119/283 (42%), Gaps = 9/283 (3%)

Query: 97  DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
              VR   ++      ++E    + +    P    +  G    RR FLDR VF   P   
Sbjct: 4   GGGVRQAFVDGKKASSLEEYFGGVAVVAFTPDDLEVVKGGPEARRTFLDRAVFNRFPAFL 63

Query: 157 RRMIDFERLMRGRNRLLTEGYF-DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
           +   D+ R ++ RNRLL +G   ++++  + +  +A  G ++ + R  ++  L+      
Sbjct: 64  KESRDYARALKNRNRLLRDGPAAEAAYLDAYDETLARAGARVYVRRRALMAELAPRAQAT 123

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-----GRKMDSMSRRTLIGPHR 270
                   +  +  G+      Q F  + E              R+ D     T +GPH 
Sbjct: 124 FASIGR-TVDPAAYGYHPAHLAQEFAEVDEVRLADALLEALAGRRRRDLERGFTSVGPHV 182

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
            D+ V    ++    + S G+Q+ +++G  +A    +    GF P+LLLD++S+ LD ++
Sbjct: 183 DDVAVTLGGRSARA-YASQGQQRALVLGWKIAEIENLHAALGFLPLLLLDDVSSELDPER 241

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFMRISNHQA 372
              L   +   G+Q+F+T TD S+   +      +M +   Q 
Sbjct: 242 NAYLMGYLAASGAQVFLTTTDASLVRAAAAHDTLWMDVHAGQV 284


>gi|87124943|ref|ZP_01080790.1| RecF protein [Synechococcus sp. RS9917]
 gi|86167263|gb|EAQ68523.1| RecF protein [Synechococcus sp. RS9917]
          Length = 344

 Score =  202 bits (514), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 75/331 (22%), Positives = 137/331 (41%), Gaps = 15/331 (4%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
            +G NGVGK+N+LEA+  L   R  R +   D+               E  +      ++
Sbjct: 1   MIGRNGVGKSNLLEAVELLGSLRSHRASQDQDLIHWDQSRAVLRAMAAEQDQ------LE 54

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           LE R  +  R  + N  V+    +L   LR         ++  G    RR++LDR+V  +
Sbjct: 55  LELR-RKGGRQARRNGRVLERQLDLIGPLRCVGFSALDLQLVRGEPALRRQWLDRVVLQL 113

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEG----YFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           +P +   +  + RL+R R +L                  + QMA +  +I+  R   +  
Sbjct: 114 EPVYGDLISRYGRLLRQRAQLWRRQSTATPEREQLLEVFDQQMALVSTRIHRRRRRALAR 173

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKMDSMSRRTL 265
           L  L   +  + +  H  L L      + +  ++    ++  A +L   R  ++      
Sbjct: 174 LQPLAAAWQHQLSDGHEALELRYEAGSRLEGEEAEEPWRQAIAAQLLAQRAEEARLGSCR 233

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           +GP R ++ +   D        S G+Q+ +++ + LA  +L+    G  P+LLLD++ A 
Sbjct: 234 VGPQRDEIALML-DGIAARRFASAGQQRTLVLALKLAELQLVQELWGEPPLLLLDDVLAE 292

Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           LD  ++ AL   V     Q  ++ T    F+
Sbjct: 293 LDPHRQLALLEAVGGT-HQCLISATHLDAFE 322


>gi|318042584|ref|ZP_07974540.1| recombination protein F [Synechococcus sp. CB0101]
          Length = 344

 Score =  202 bits (514), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 81/346 (23%), Positives = 157/346 (45%), Gaps = 15/346 (4%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
           + +G NG GK+N+LEA+  L   R  R +S  D+ R G        A  EG +    + +
Sbjct: 2   LVIGRNGEGKSNLLEAVELLGSLRSHRCSSDRDLIRQGERQAL-ISASCEGGDL---LEL 57

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           +L  +  R  R    N  V+    EL   LR          +  G    RR++LDR+V  
Sbjct: 58  ELRLQGGRQARR---NGKVLERQHELIGPLRCVGFSALDLELVRGEPALRRQWLDRVVLQ 114

Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEG---YFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           ++P +   +  + RL+R R++LL  G           + + QMA +G +++  R+  +  
Sbjct: 115 LEPVYAELLSRYGRLLRQRSQLLRRGLGAGMQPELLEAFDQQMALIGTRLHRRRLRALRR 174

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
           L  L   + ++ +    +L L      +   +++    ++   ++L   R  +    +  
Sbjct: 175 LQPLAAAWQERLSGGREQLQLRYRPGSQLEGEEAEGPWRDALLEQLRQQRPEELRLGQCS 234

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           +GPHR ++ ++  D+     +GS G+Q+ +++ + LA   L+    G  P+LLLD++ A 
Sbjct: 235 VGPHRDEVALELGDQP-ARRYGSAGQQRTLVLALKLAELELVHQLWGEPPLLLLDDVLAE 293

Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNH 370
           LD  ++  L   V + G Q  ++ T    F    ++ ++ + +   
Sbjct: 294 LDPGRQQLLLEAVGE-GHQCLVSATHLGAFSGGWHQRSQVVTVEAG 338


>gi|167470927|ref|ZP_02335631.1| recombination protein F [Yersinia pestis FV-1]
          Length = 221

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 6/225 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  S  L   A     VG NG GKT++LEA+  L  GR FR      V
Sbjct: 1   MALTRLLIKDFRNIESADLALAAGFNFLVGPNGSGKTSVLEAVYTLGHGRAFRSLQAGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F     RV+  E  A + +    + D  VR   I+      V EL + L +  
Sbjct: 61  IRHECAEF-VLHGRVDANEREASVGLSKSRQGDTKVR---IDGTDGHKVAELAQMLPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    + +G    RR FLD   F  +P       + +RL++ RN  L +     +   
Sbjct: 117 ITPEGFTLLNGGPKFRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VSRYTQIR 175

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
           + + ++  L  +I+  R    +A+++ I         P   LS +
Sbjct: 176 AWDQEIIPLAERISEWRAAYSDAIAADISATCA-LFLPEFALSFS 219


>gi|289642468|ref|ZP_06474613.1| DNA replication and repair protein RecF [Frankia symbiont of
           Datisca glomerata]
 gi|289507727|gb|EFD28681.1| DNA replication and repair protein RecF [Frankia symbiont of
           Datisca glomerata]
          Length = 469

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 12/214 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++ +FR+Y +L L+       FVG NG GKTN+LEA+ +L+     R AS A +
Sbjct: 1   MRLTHLSLVDFRSYPALDLLLAPGVNTFVGSNGQGKTNLLEAVGYLATLGSHRVASDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ S  +  AR+   +  A   +++E    R+ R  ++N   +    ++   L + +
Sbjct: 61  VREGATSA-AVRARIARGDRAA--LVEIEIIPGRANRA-RLNRAPLARSHDVLGLLVMVF 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-------- 176
             P    +  G    RRRFLD ++ A  PR    + D+++++R R+ LL           
Sbjct: 117 FAPEDLALVKGDPAGRRRFLDDLLVARTPRLAGVLADYDKVLRQRSTLLRTAGAARRSGR 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
             D       ++ +   G ++  AR+ ++  L  
Sbjct: 177 AGDLRTLDVWDSHLVRHGCELLAARLALVEQLRP 210



 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
           R+ +     TL+GPHR +L++    +     + S GE   + + + LA   L+ +     
Sbjct: 352 RQQEIERGATLVGPHRDELLLSISGRP-ARGYASHGESWSLALALKLASFELLQD-DQRE 409

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQAL 373
           P+LLLD++ A LD  +R+ L  ++     Q+ +T   +  V  +L        +++ +  
Sbjct: 410 PVLLLDDVFAELDTHRRDRLAELIRSAE-QVLVTAAVEADVPAAL--AGARFTVADGKVS 466

Query: 374 CI 375
            +
Sbjct: 467 RV 468


>gi|71064584|ref|YP_263311.1| DNA replication and repair protein RecF [Psychrobacter arcticus
           273-4]
 gi|71037569|gb|AAZ17877.1| DNA replication and repair protein RecF [Psychrobacter arcticus
           273-4]
          Length = 404

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 86/414 (20%), Positives = 154/414 (37%), Gaps = 61/414 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L IS  RN   + L   A   + +G NG GKT++LE +  LS G+ FR        +
Sbjct: 2   IERLQISYLRNLTPINLAPAA-CNVIIGANGSGKTSLLEGMFLLSRGKSFRHNQPKRYIQ 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
               +  +  A++         ++ ++ + D +   L++N   +     L + L    + 
Sbjct: 61  HHKDAA-TVHAKLSDGR-----TLAIQKQAD-ATTILRLNQTTVYNQSILTEQLPTLLID 113

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182
           PS   +    S  RR+ LD +VF +      + I ++RL++ RN LL +         + 
Sbjct: 114 PSTMDMLEQGSASRRQLLDWLVFHMKQGFHPQWIAYQRLLKQRNSLLKQRRHLTHVQLAE 173

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             + +  +A     I+  R  +  A      E + +   P     L+   +  +D S   
Sbjct: 174 LRAWDKGLASHAALIHHYREAIFEAWQPYFSESIAQL-LPAYAEQLSLSYNAGYDTSVAL 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD----------------------- 279
             +     L +    D     T IG HR+D+ V +                         
Sbjct: 233 DIQ-----LNERLDQDLQLGYTRIGNHRADIHVHWRSIRPIHKANEHLNSPLAAAADSTF 287

Query: 280 -----KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF------------APILLLDEI 322
                K       S GE+K+++  + L+   L+ NT                P++LLD+I
Sbjct: 288 KLPILKEQAANILSRGEKKLLITALRLSQLPLLLNTGNDLEASVNDAKLSATPVVLLDDI 347

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD---SLNETAKFMRISNHQAL 373
           +A LD+     L   +  +  Q+FMT    S+        E  +   +     L
Sbjct: 348 TAELDDRAIEILLSTLAQLPCQVFMTSLTDSILPLVYEYWEKPQVFHMKQGSIL 401


>gi|288939767|ref|YP_003442007.1| DNA replication and repair protein RecF [Allochromatium vinosum DSM
           180]
 gi|288895139|gb|ADC60975.1| DNA replication and repair protein RecF [Allochromatium vinosum DSM
           180]
          Length = 358

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 144/376 (38%), Gaps = 27/376 (7%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M     ++ L I   RN   L L  D +  +  G NG GKT++LEAI  L+ GR FR   
Sbjct: 1   MDPEPGLRSLRIESLRNIRRLDLAPDTRTLLLTGANGAGKTSVLEAIYLLARGRTFRGTK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              +T  G       + RVEG    +D   + ++       +VR +           +  
Sbjct: 61  AGPLTTQGE-----FYTRVEGRYQPSDRDVVRLRYVKEGATAVRDIHPPLWAETGGADWR 115

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
             L++  +  +   +  G    RRRFLD  VF ++ R  +   DF R++  RN  +  G 
Sbjct: 116 SPLQVKLVGENAQILLDGDPSLRRRFLDWNVFHVEHRFAQVQKDFTRVLMQRNAAIRSGG 175

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
              S     + +   L   ++  R        +  ++      F H         D ++ 
Sbjct: 176 ---SQLGLWDRRFIALAESVDRQRAAFHAEWRTCFLDLCGDYPFLH-------GTDLRYR 225

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           + +   +E   + L      +     TL GP R+D  +D  +        S G+ K+V+ 
Sbjct: 226 RGWPDGRE-LGETLVALADQELARGYTLAGPSRADFRIDPGEGRRGF---SRGQTKIVVA 281

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT----DKS 353
            + LA  R+         I LLD++ A LD      L+      G+Q+  T      D  
Sbjct: 282 LLQLAAERVHRAHGREPVIWLLDDLEAELDRTLAERLWSAFGATGNQVIATRVATDGDPG 341

Query: 354 VFDSLNETAKFMRISN 369
           +F +  E+     + +
Sbjct: 342 IFGN-TESLTMFHVEH 356


>gi|148238788|ref|YP_001224175.1| DNA replication and repair protein RecF [Synechococcus sp. WH 7803]
 gi|147847327|emb|CAK22878.1| DNA replication and repair protein RecF [Synechococcus sp. WH 7803]
          Length = 365

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 83/359 (23%), Positives = 160/359 (44%), Gaps = 17/359 (4%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           FRN+  L+L  +A   + +G NG+GK+N+LE++  L   R  R +  AD+    +     
Sbjct: 4   FRNHCHLQLEIEAPRLLVIGSNGIGKSNLLESVELLGSLRSHRSSQDADLIHWDASRALL 63

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
             + V+      D  ++LE R     +  +   V+ R +D L   LR          +  
Sbjct: 64  RASCVD------DTEVELELRRRGGRQARRNGKVLQRQMD-LIGPLRCVGFSALDLHLVR 116

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG-----YFDSSWCSSIEAQ 189
           G    RR +LDR+V  ++P +   +  + RL+R R++    G         +   S + Q
Sbjct: 117 GEPALRRHWLDRVVLQLEPVYAELIGRYNRLLRQRSQFWRRGGGGTSVEHQALLDSFDIQ 176

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG--KFDQSFCALKEEY 247
           MA +  +I+  R   ++ L  L   +  + +  H +L L        + +++    +   
Sbjct: 177 MALVCTRIHRRRRRALSRLEPLAAAWQSRLSKGHEQLELRYSPGSVLEGEEAEEPWRLAI 236

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
            ++L   R  +       +GPHR ++ +   +  +    GS+G+Q+ +++ + LA   L+
Sbjct: 237 EQQLHRQRSEEERLGSCRVGPHRDEIDM-LLNGTVARRFGSSGQQRTLVLALKLAELELV 295

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFM 365
               G  P+LLLD++ A LD  ++ AL   V D   Q  ++ T    F+    + ++ +
Sbjct: 296 GELCGHPPLLLLDDVLAELDPQRQLALLEAVGDT-HQCLVSATHLDAFEGEWRQRSQIL 353


>gi|113953191|ref|YP_729686.1| recombination protein F [Synechococcus sp. CC9311]
 gi|113880542|gb|ABI45500.1| DNA replication and repair protein RecF [Synechococcus sp. CC9311]
          Length = 345

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 144/342 (42%), Gaps = 17/342 (4%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
            +G NGVGK+N+LE++  L   R  R +   D+    +          +         ++
Sbjct: 1   MIGSNGVGKSNLLESVELLGSLRSHRSSQDGDLIHWDASRALLKATCADQQI------LE 54

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           LE R  R  R  + N   ++   +L   LR          +  G    RR++LDR+V  +
Sbjct: 55  LELR-RRGGRQAKRNGKSLQRQLDLIGPLRCVGFSALDLHLVRGEPALRRQWLDRVVLQL 113

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDS-----SWCSSIEAQMAELGVKINIARVEMIN 206
           +P +   +  + RL+R R +    G   S     +   S + QMA +  +I+  R+  + 
Sbjct: 114 EPVYADLISRYGRLLRQRAQFWRRGGLSSGMEPQALLESFDTQMALVSTRIHRRRLRALA 173

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFDGRKMDSMSRRT 264
            L  L   +  + +     L L          ++   + +    ++L + R  +      
Sbjct: 174 RLEPLAAVWQDRLSEGREHLQLGYSPGSALIGEEQEESWRLSIEQQLREQRSEEERLGSC 233

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
            +GPHR ++ +   +       GS G+Q+ +++ + +A  +L+    G  P+LLLD++ A
Sbjct: 234 RVGPHRDEIEMRI-NGTAARRFGSAGQQRTLVLALKMAELQLVGELCGEPPLLLLDDVLA 292

Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFM 365
            LD  ++ AL   V +   Q  ++ T    F+    E ++ +
Sbjct: 293 ELDPTRQLALLEAVGE-NHQCLVSATHLDAFEGGWREQSQIL 333


>gi|320532811|ref|ZP_08033588.1| recombination protein F [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134962|gb|EFW27133.1| recombination protein F [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 349

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 125/345 (36%), Gaps = 37/345 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+Y SL L  +   + FVG NG GKTN++EAI +L+     R  +   +
Sbjct: 1   MYVSDLSLDDFRSYRSLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTAL 60

Query: 65  TRI---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            R    G         R   + G     +++E    ++ R  ++N    R  D L   LR
Sbjct: 61  VRRTAPGQAQPAGAVVRARAVHGERPSVLEIEIIAGKANRA-RLNRGGCRPRD-LLGVLR 118

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS- 180
                P    +       RR FLD +V  + P       + ++++  R  LL        
Sbjct: 119 AVVFAPEDLSLVRAEPGIRRGFLDDLVITLRPGLAGVRAEHDKILAQRASLLKSARAARS 178

Query: 181 ------SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-----HIKLSLT 229
                 S     +AQ+A    ++  ARV+++  L   +    +  +         +L+  
Sbjct: 179 STASMLSTLEIWDAQLAAAAARLIAARVDVVRRLRPWVASAYETVSGACGQRSRAQLAYR 238

Query: 230 GFL---------DGKFDQSFCALKEEYAK----------KLFDGRKMDSMSRRTLIGPHR 270
             L         D   + ++ A +E               + +    +      LIG HR
Sbjct: 239 SSLLTHEGSPEPDPHDESAWLAGEETLLDETALATRLESAMGELHAREIDRGANLIGAHR 298

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
            DL +            S GEQ  + + + LA   ++        
Sbjct: 299 DDLSLFLTGLP-ARGFASHGEQWSLALALRLASYDMLRTDIDAYG 342


>gi|288573677|ref|ZP_06392034.1| DNA replication and repair protein RecF [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569418|gb|EFC90975.1| DNA replication and repair protein RecF [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 354

 Score =  197 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 151/361 (41%), Gaps = 21/361 (5%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
             FRN  + R+ +D +  + +G NG GKTNILE++  L+    F+    + +    S   
Sbjct: 9   RNFRNLETGRIKWDRKLNLLIGPNGAGKTNILESLHILTGWGPFKSLRKSPLVNWNSDE- 67

Query: 73  FSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
             +   +EG  EG  ++ I+       +++C    D        +   +     +P    
Sbjct: 68  --SRGFLEGTFEGEDNVLIQSSVTSRCAMKC----DGKRSNCASIRFRVPALAFLPGDLA 121

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
           +  G    RRRFLD +   + P +  ++ ++ R +R +  LL+EG         I++ MA
Sbjct: 122 LIEGGPSVRRRFLDVLCALLYPVYALKLTEYRRAVRHKRALLSEGRS----TELIDSVMA 177

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
            +   I   R +   A++  +  +      P I+L+L+    G    +       Y + +
Sbjct: 178 PMAEWIWTCREKASLAVTMGLESFSDLLPGP-IELALSRGGIGLAGNNPIG----YIEGV 232

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
              R+ +  S R L+GPHR DL +D      +    S G+++   + + +A    +    
Sbjct: 233 RSRRRAEIGSGRPLVGPHRDDLTIDASGMEASSRF-SRGQRRRTSLAMVMAAGWAVERKL 291

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371
             +PILLLDE+++ LD+  R      +   G QIF    +  +   +        +   +
Sbjct: 292 RRSPILLLDEVASELDQSGREITVETLVSSGWQIFAATAEDDL---IRWPGSLWTVREGR 348

Query: 372 A 372
            
Sbjct: 349 I 349


>gi|227487660|ref|ZP_03917976.1| recombination protein F [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227092354|gb|EEI27666.1| recombination protein F [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 267

 Score =  197 bits (500), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 108/249 (43%), Gaps = 10/249 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++  L L      T+F G NG GKTNI+E+I +L+     R    A +
Sbjct: 1   MFVRHLTLKDFRSWPELDLELGPGVTVFTGANGFGKTNIVESIYYLANLSSHRVKHDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+ +       V G     ++ +++  +   +    Q+N   +R   EL   +R   
Sbjct: 61  VRAGADAAQLAATVVSGG---RELVVRMTVKP-HAANLAQLNRTRLRHPRELLGGVRCVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----- 179
             P    + +G    RRR +D ++    PR      ++ER+++ RN LL +   +     
Sbjct: 117 FSPEDLHLVTGEPEGRRRLIDSVISQETPRFSATKAEYERVLKQRNALLKQAKANFYPSM 176

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                  ++Q+A LG ++  AR  +I  L  L+      E  PH +     +L     ++
Sbjct: 177 HGMLDVWDSQLASLGAELVTARSALITRLHPLVEAAY-LEIAPHSRPPAISYLTRDQGET 235

Query: 240 FCALKEEYA 248
               ++  A
Sbjct: 236 TAETEDAAA 244


>gi|116072584|ref|ZP_01469850.1| RecF protein [Synechococcus sp. BL107]
 gi|116064471|gb|EAU70231.1| RecF protein [Synechococcus sp. BL107]
          Length = 353

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 77/350 (22%), Positives = 154/350 (44%), Gaps = 16/350 (4%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82
           +       + +G NG+GK+N+LEA+  L   R  R +   D+ +   P      A +   
Sbjct: 1   MELTESRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWDRP-----LALLRAD 55

Query: 83  EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142
            G  D  ++LE R     +  +   V+ R +D L   LR          +  G    RR+
Sbjct: 56  VGDGD-RLELELRRRGGRQARRNGKVLDRQLD-LIGPLRCIGFSALDLDLVRGEPALRRQ 113

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS----WCSSIEAQMAELGVKIN 198
           +LDR+V  ++P +   +  + RL+R R++L      +++       + + QMA +  +I+
Sbjct: 114 WLDRVVLQLEPVYADLISRYTRLLRQRSQLWRSHRQNTAERSGLLDAFDVQMALISTRIH 173

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRK 256
             R   ++ L  +   +    +    +L L      + D  ++    +    ++L + R+
Sbjct: 174 RRRRRALHRLEPIAQRWQSHLSSGKERLELRYQPGSRLDGEEAEEPWRLAIEEQLRNQRE 233

Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
            +       +GPHR ++ +    ++     GS G+Q+ +++G+ LA   L+    G  P+
Sbjct: 234 DEERLGNCRVGPHRDEINM-VLGESPARRFGSAGQQRSLVLGLKLAELELVKELCGEPPL 292

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFM 365
           LLLD++ A LD  ++  L   V +   Q  ++ T    F +   + A+ +
Sbjct: 293 LLLDDVLAELDPIRQQLLLEAVGN-DHQCLISATHLDGFHEGWRQEAQIL 341


>gi|158311871|ref|YP_001504379.1| DNA replication and repair protein RecF [Frankia sp. EAN1pec]
 gi|158107276|gb|ABW09473.1| DNA replication and repair protein RecF [Frankia sp. EAN1pec]
          Length = 457

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 112/275 (40%), Gaps = 23/275 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+YA L LV +   T FVG NG GKTN++EAI F++     R A+ A +
Sbjct: 1   MHLTHLSLTDFRSYARLDLVLEPGVTTFVGSNGQGKTNLIEAIGFVATLGSHRVANDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G          V G        ++++    ++ R +++N   +    ++   L    
Sbjct: 61  VREGCGQAVVRARIVRGDRAAL---VEMQIVPGKANR-VRLNRAPVARARDVAGLLATVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL--------TEG 176
             P    +  G   ERRRFLD ++ A  PR      D++R+++ R+ LL          G
Sbjct: 117 FAPEDLALVKGDPAERRRFLDDLLVARAPRMAAVQSDYDRVLKQRSALLRSAGAARRAGG 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
             D       +  +A+ G ++  AR+ ++  L   +               +        
Sbjct: 177 RGDLRTLDVWDRHLADHGAELLAARLALVEELRPRVESAYAAVAGQDAPTGIEYRSTVTL 236

Query: 237 DQSFCALKEEYAKKLFDGR----KMDSMSRRTLIG 267
           D S         + L  GR    + D  + R   G
Sbjct: 237 DSSPD-------RALSPGRAGLGEPDGDAGRNGNG 264



 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            AL+E     L   R  +     TL+GPHR DL++    +     + S GE   + + + 
Sbjct: 326 AALEEAILAGLAAVRTQEIERGVTLVGPHRDDLLLSVNGRP-ARGYASHGESWSLALALR 384

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLN 359
           LA   L+       P+LLLD++ A LD  +R  L  +V D   Q+ +T   D  V   L 
Sbjct: 385 LASFELL-RADDREPVLLLDDVFAELDTRRRARLAALVADAE-QVLVTAAVDADVPAEL- 441

Query: 360 ETAKFMRISNHQA 372
                  + + + 
Sbjct: 442 -AGVRFEVVSGEV 453


>gi|256370827|ref|YP_003108651.1| DNA replication and repair protein RecF [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256007411|gb|ACU52978.1| DNA replication and repair protein RecF [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 346

 Score =  192 bits (489), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 84/364 (23%), Positives = 148/364 (40%), Gaps = 25/364 (6%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           + L I+  RN               VG NG GKT++LE++S +  GR FR    + + R+
Sbjct: 2   RSLRITGLRNLDLTIDHVPDDIIAVVGSNGHGKTSLLESVSVVLAGRSFRTHDRSALVRV 61

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHLRISWLV 126
           G             +E      +++  R DR  R   +++    +        L +    
Sbjct: 62  GHDEAVVVA----DVERELAPPVRVGRRVDREGRLETRVDGQREQR----GPSLPVVSFH 113

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P   +I SG   +RRRFLD  V  +D     R+   ER++R R   L     D    S +
Sbjct: 114 PDDVQIASGGPEQRRRFLDECVVGLDRGAAIRLRQAERVLRQRTEALRAPVLDEVTLSIL 173

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E ++A   V++   R      ++      + +      ++ +T    G         +  
Sbjct: 174 EERLARASVEVAELRARAAEVIAPHARAVIDEMLMSAGRVVVTYRGAGD--------EAT 225

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
             ++L   R  D     T +G HR D+ +    + I    GS G+ + V+V + +A AR 
Sbjct: 226 LLEQLRARRGDDRRRGVTSVGFHRDDVEILLDGEPIRRM-GSQGQVRTVVVALKVALARA 284

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           +   T   P+L+LD++ A LD ++      ++   G Q F++ T       +  +   +R
Sbjct: 285 MEAVTKEPPVLVLDDLLAELDAERARRAVAMME--GMQAFISHT-----APVEGSGFELR 337

Query: 367 ISNH 370
           IS+ 
Sbjct: 338 ISHG 341


>gi|148243191|ref|YP_001228348.1| recombination protein F [Synechococcus sp. RCC307]
 gi|147851501|emb|CAK28995.1| DNA replication and repair protein RecF [Synechococcus sp. RCC307]
          Length = 342

 Score =  192 bits (488), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 154/346 (44%), Gaps = 11/346 (3%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
            +G+NG GK+N+LEA+  L+  R  R +   D+ + G  S     A V G E   +++I+
Sbjct: 1   MLGNNGEGKSNLLEAVELLASLRSHRCSQDRDLIQRGETS-SRLKAWV-GEEATDELAIE 58

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           L  +  R    +Q N  ++    +L   LR          +       RR +LDR+V  +
Sbjct: 59  LRRQGGR---RVQRNGKLLERHADLIGPLRCVGFSALDLSLVRDEPAGRRDWLDRVVQQL 115

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDS-SWCSSIEAQMAELGVKINIARVEMINALSS 210
           +P +   +    RL+R R++LL     +      + + Q+A +G +++  R   +  L  
Sbjct: 116 EPVYGELLSRHGRLLRQRSQLLKRQLSNRDELLDAFDHQLAVIGTRLHRRRHRALKRLEP 175

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
           L   + ++ +    +L L      +   D+     ++    +L + R  ++      +GP
Sbjct: 176 LAAPWQERLSGGREQLQLLYQPGTQLNGDEDEHVWQQCLLNQLQEQRPQEARLGYCSVGP 235

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
            R D+ +    +      GS G+Q+ +++ + LA   L+++ +G  P+LLLD++ A LD 
Sbjct: 236 QRDDVALLLGGEP-ARRLGSAGQQRCLVLALKLAELELVTSLSGVPPLLLLDDVLAELDP 294

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSV-FDSLNETAKFMRISNHQAL 373
            ++  L   V + G Q  ++ T          + A+ + +     L
Sbjct: 295 QRQQLLLEAVGE-GHQCLVSATHLQSCVADWQQRAQLVEVRAGAVL 339


>gi|296531698|ref|ZP_06894532.1| recombination protein F [Roseomonas cervicalis ATCC 49957]
 gi|296267973|gb|EFH13766.1| recombination protein F [Roseomonas cervicalis ATCC 49957]
          Length = 259

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/259 (31%), Positives = 126/259 (48%), Gaps = 6/259 (2%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
              +++  L + +FR+YA L L F A   +  G NGVGKTN+LEAIS L+PGRG R A  
Sbjct: 4   PPALRLTRLMLQDFRSYAQLDLRFQAGVVVIAGRNGVGKTNLLEAISLLTPGRGLRNARA 63

Query: 62  ADVTRIGSPS--FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            ++ R        ++     +G  G   I    +   DR  R  +++   +R   EL+  
Sbjct: 64  GELGRREGEESRPWTIAGHFDGPAGPMTIGTGQDPASDR--RGFRLDGAPLRSQAELSAQ 121

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           +   WL P MDR+F   +  RR+FLDR+V+A +P H R +  +E  M  RNRLL EG  D
Sbjct: 122 IAALWLTPQMDRLFQEGASGRRKFLDRLVWAREPSHARDVAAYESAMSQRNRLLAEGRRD 181

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ- 238
           + W +++E  MA   V    +R      L++ +   +    FP  +L L   +    ++ 
Sbjct: 182 ARWLAALEDTMARHAVAAIASRRTSCAQLNATLRAGIA-GAFPAARLELLCPIATALEER 240

Query: 239 SFCALKEEYAKKLFDGRKM 257
              A++E     L   R  
Sbjct: 241 PALAVEESLRDGLAADRPR 259


>gi|288916708|ref|ZP_06411083.1| DNA replication and repair protein RecF [Frankia sp. EUN1f]
 gi|288351963|gb|EFC86165.1| DNA replication and repair protein RecF [Frankia sp. EUN1f]
          Length = 433

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 12/226 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++++FR+Y  L LV +   T FVG NG GKTN++EAI F++     R A+ A +
Sbjct: 1   MHLTHLSLTDFRSYPRLDLVLEPGVTTFVGSNGQGKTNLIEAIGFVATLGSHRVATDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+         V G        ++++    ++ R +++N   +    ++   L    
Sbjct: 61  VREGTTQAVVRSRIVRGDRAAL---VEIQIVPGKANR-VRLNRAPVPRALDVAGLLATVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--------G 176
             P    +  G   ERRRFLD ++ A  PR      D+ER+++ R+ LL          G
Sbjct: 117 FAPEDLALVKGDPAERRRFLDELLVARSPRMAAVQADYERVLKQRSALLRTAGAARRSGG 176

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
             D       +  +A+ G ++  AR+ ++  L   +          
Sbjct: 177 RGDLRTLDVWDGHLADHGAELLAARLALVEELRPRVRSAYAAVAGE 222



 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L E     L   R  +     TL+GPHR DL++    +     + S GE   + + + 
Sbjct: 302 AELAEAILTGLAAVRSQEIERGVTLVGPHRDDLLLSVKGRP-ARGYASHGESWSLALALR 360

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLN 359
           LA   L+       P+LLLD++ A LD  +R  L  +V     Q+ +T   +  V   L 
Sbjct: 361 LASYDLL-RADDREPVLLLDDVFAELDVRRRARLAALVAPAE-QVLVTAAVEADVPAEL- 417

Query: 360 ETAKFMRISNHQA 372
                  +S+ + 
Sbjct: 418 -AGVRFEVSSGEV 429


>gi|294101018|ref|YP_003552876.1| DNA replication and repair protein RecF [Aminobacterium colombiense
           DSM 12261]
 gi|293615998|gb|ADE56152.1| DNA replication and repair protein RecF [Aminobacterium colombiense
           DSM 12261]
          Length = 339

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/353 (24%), Positives = 148/353 (41%), Gaps = 25/353 (7%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82
           L + A   + VG+NG GKTN LEAI  LS    FR +  + +    +       A + G 
Sbjct: 6   LEWAAGLNLLVGNNGSGKTNALEAIHILSGWGPFRSSRKSFLVNWDTEE---KQAYLRGY 62

Query: 83  -EGLADISIKLETRDDRSVRC--LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME 139
             G  ++ I     +   ++C   +I    +R +      +     +P    I  G    
Sbjct: 63  FSGETNLDIVATVGEKNIIQCDGKRITHGNVRSL------IPALAFLPGDLAIVDGAPSV 116

Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199
           RR+FLDR+   + P + R+M D  R +R R  LL E   D S  S +   +A L   I  
Sbjct: 117 RRQFLDRLCALLFPLYVRKMSDCRRALRHRVILLRE-RKDPSLTSKV---LAPLVSWIWS 172

Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            R   ++ L   I E+  +   P   + LT    G  D       ++Y + +   R+ + 
Sbjct: 173 TRAAAVDLLKIGIQEF--RILLPS-DIVLTFERGGALD--LQDPMQDYWESVRKWREKEH 227

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
           ++    +GP R D+I+    ++++I   S G+++   V + LA    +       P+L+L
Sbjct: 228 ITGVPQVGPQRDDMIITTKGQSVSIVM-SRGQRRRTAVALMLAAGWAVERKLRRKPLLIL 286

Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
           DEI+A LD+  RN L   + +   Q+F    + S            ++     
Sbjct: 287 DEIAAELDDRGRNILIDALVESSWQVFAATAESS---MNGWPGTVWQVRQGNI 336


>gi|296105500|ref|YP_003617200.1| DNA replication and repair protein RecF [Legionella pneumophila
           2300/99 Alcoy]
 gi|295647401|gb|ADG23248.1| DNA replication and repair protein RecF [Legionella pneumophila
           2300/99 Alcoy]
          Length = 309

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 128/325 (39%), Gaps = 20/325 (6%)

Query: 49  FLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            LS    FR    A +   G     + FA        + IS++    D      +++N+ 
Sbjct: 1   MLSCAHSFRSREVAPIISYGQNQ-LNVFAH---TYDESTISVQKSITDGTQ---IKLNNQ 53

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
                 +L   L    +   + +I       RR  LD  +F +   + +   D++R++  
Sbjct: 54  FCCTTSQLAYALPCQVIYSDIFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQ 113

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
           RN LL        +    + Q+++L  +++ AR +          + +   +  +I  ++
Sbjct: 114 RNALLKSRATYEHFI-PWDQQLSQLANQLDKARNDYFLQWQPKFYQVLS--DLTNISCTI 170

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
             +       +   ++E     L      D     T  GPH++DLI++     +     S
Sbjct: 171 EYYKGWDRKNAGQNMEE----LLQKSFDSDKNKLYTQYGPHQADLIINIEQYRVKHTL-S 225

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            G+QK++L+ + LA  +L+        + L+D+++A LD+  +  L + +T    Q  +T
Sbjct: 226 RGQQKIILIALKLAQGQLL----DKDCLYLIDDLAAELDDYHQRNLIKYLTQQKGQFVIT 281

Query: 349 G-TDKSVFDSLNETAKFMRISNHQA 372
              + + +D L   +    ++    
Sbjct: 282 NLINNNNYDILPIDSGLFEVNCGAI 306


>gi|148927257|ref|ZP_01810828.1| DNA replication and repair protein RecF [candidate division TM7
           genomosp. GTL1]
 gi|147887343|gb|EDK72796.1| DNA replication and repair protein RecF [candidate division TM7
           genomosp. GTL1]
          Length = 309

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 110/262 (41%), Gaps = 8/262 (3%)

Query: 94  TRDDRSVRCLQINDVVIRVVDELNKH-LRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152
            +  + +   +++ +V +      +H L +    P   R+  G    RR F+D ++  ++
Sbjct: 40  LKLKKRLAAKRLSSMVSKKQRLTYQHKLPVVLFEPGDLRLLHGSPARRRLFIDTLISQLE 99

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           P +   +  ++R+++ RN LL   +         +  ++E G +I   R +    L++ +
Sbjct: 100 PLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVWDVALSEYGARIVAERQKYSALLNASL 159

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
            E  +        +SL       F +   ++++     L      D     T +GPHR D
Sbjct: 160 RERYRAIAHTKDIVSLAYS----FQEXAESVQQAMVSALHAHHVRDKALGYTTVGPHRHD 215

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           LI    D     +  S GE + +++ +      ++       P+LLLD++ + LD  +R 
Sbjct: 216 LIFSMND-VEATSIASRGETRSIVLALKFIEVEMLRVYRDQPPLLLLDDVFSELDSTRRM 274

Query: 333 ALFRIVTDIGSQIFMTGTDKSV 354
           AL  +     +Q  +T T+  +
Sbjct: 275 ALVEV--GSSTQTVITTTNADI 294


>gi|260654351|ref|ZP_05859841.1| putative DNA replication and repair protein RecF [Jonquetella
           anthropi E3_33 E1]
 gi|260630984|gb|EEX49178.1| putative DNA replication and repair protein RecF [Jonquetella
           anthropi E3_33 E1]
          Length = 351

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 19/353 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L    FRN A+ ++ F ++  +  G+NG GKTN LEA++ L     F    ++++
Sbjct: 1   MRVVGLRTRRFRNLAAQKVSFSSEMNLITGENGSGKTNFLEALNCLCGWGPFSAGRWSEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           T       F      +G  G    ++++      S+R     D       ++        
Sbjct: 61  TCWEENGAFELVGSFDGESG---GTVQVLCASRPSLRL----DGDRATWTDVRLFAPCLS 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P+   +  G  + RRRFLD     + P + RR+ D+ RL+R +  LL  G        
Sbjct: 114 FLPAHMALIEGGPVVRRRFLDVGTALLYPLYARRLSDWRRLVRHKRYLLRLGKPG----D 169

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-FDQSFCAL 243
             +  M  L   + + R E + AL   +       + P +++ L     G  FD      
Sbjct: 170 VADRIMKPLAGWLWLKREEFVGALQRELDAQADLLSCP-VQIGLHRGGGGACFDP----- 223

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           +E++A  L      +  S   L+GPHR DL +   ++   I + S G+++   + + LA 
Sbjct: 224 EEDFAAGLERLGPAERKSGLPLVGPHRDDLTLTVSERR-AIDYFSRGQRRRAALALILAA 282

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
              + +  G +PILL+DE+++ LDE  R  + + +   G Q+F    +    D
Sbjct: 283 GGAVKSQLGRSPILLIDEVASELDELGRQKVVQALGQSGCQVFAATAEPQSLD 335


>gi|123966993|ref|YP_001012074.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9515]
 gi|123201359|gb|ABM72967.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9515]
          Length = 325

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 149/334 (44%), Gaps = 18/334 (5%)

Query: 43  ILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           +LE++  LS  R  R  S  D+ +  S      + +++  +   D+ + L     +  + 
Sbjct: 1   MLESVEVLSQLRSSRALSDKDLIKNDSEMA-VIYGQIDFTD---DLKVNLF---RKGSKK 53

Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           + +ND +++   E+  ++R      +   I       RR ++DR+V  ++P +   +  F
Sbjct: 54  IYVNDSLLKKQSEIKNYIRSVCFCSNDINIVKSEPGYRRTWIDRVVSQLEPIYVELIHRF 113

Query: 163 ERLMRGRNRLLTEGYFDSSW----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
            RL++ R+       F          S + QM+ +  +I   R   I+ +   +  +   
Sbjct: 114 NRLLKQRSYFWRSESFQKDQSSEVIESFDIQMSLICTRIFRRRRRAISRIRPYVEYWHNH 173

Query: 219 ENFPHIKLSLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
            +    ++S+      +     ++    +  +   +L   R +++++ +   GPHR D+ 
Sbjct: 174 LSKSKEQISINYLSSFENIDEAEEEEEVISNQMVDQLQKQRAIEALTGKCSFGPHRDDIE 233

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
               D ++   +GS+G+Q+  ++ + +A   L+ N     P+L+LD++ A LD +++N L
Sbjct: 234 FLINDISLR-KYGSSGQQRTFILALKMAELDLLRNMINLPPLLILDDVLAELDMNRQNLL 292

Query: 335 FRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRI 367
              V    SQ F++ T    F+ S   +++ + +
Sbjct: 293 LNSVGK-ESQCFISATHLDTFNQSFISSSQMIHL 325


>gi|33862129|ref|NP_893690.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|33634347|emb|CAE20032.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
          Length = 323

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 148/332 (44%), Gaps = 17/332 (5%)

Query: 44  LEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
           +E++  LS  +  R  S  D+    S    + F +++  +   ++ + L     +  + +
Sbjct: 1   MESVEVLSQLKSNRALSDKDLIENDSDMA-AIFGQIDFTD---NLKVNLF---RKGAKKI 53

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            +ND +++   E+  ++R      +   I       RR ++D++V  ++P +   +  F 
Sbjct: 54  YVNDSLLKKQTEIQNYIRSVCFCSNDIYIVKSEPGFRRSWIDKVVSQLEPVYVELIHRFN 113

Query: 164 RLMRGRNRLLTEGYFDSSW----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
           RL++ R        F          S + QM+ +  +I   R   ++ +   +  +    
Sbjct: 114 RLLKQRTHFWRSESFQKDIYSEVIESFDIQMSLISTRIFRRRRRALSKIKPYVEYWHNHL 173

Query: 220 NFPHIKL---SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
           +    ++    L+G  +   ++    + ++  ++L   R +++++ +   GPHR D+   
Sbjct: 174 SKSKEQIGINYLSGLENINQEEEEEVISKKILEQLQKQRPLEAVTGKCNFGPHRDDIEFL 233

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
             + +I   +GS+G+Q+  ++ + +A   L+ N     PIL+LD++ A LD  ++N L  
Sbjct: 234 INNISIR-KYGSSGQQRTFILALKMAELDLLRNMIDLPPILILDDVLAELDITRQNLLLN 292

Query: 337 IVTDIGSQIFMTGTDKSVFD-SLNETAKFMRI 367
            V    SQ  ++ T    F+ S   +++ + +
Sbjct: 293 SVGK-DSQCLISATHLDKFNKSFLSSSQMIYL 323


>gi|198282151|ref|YP_002218472.1| DNA replication and repair protein RecF [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666274|ref|YP_002424517.1| DNA replication and repair protein RecF [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198246672|gb|ACH82265.1| DNA replication and repair protein RecF [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518487|gb|ACK79073.1| DNA replication and repair protein RecF [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 350

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 79/368 (21%), Positives = 142/368 (38%), Gaps = 25/368 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L+I   R   +L L  D Q    +G NG GK+++LEAI  L  G+ +R  S   V
Sbjct: 1   MPLEALHIQSVRCIETLDLKTDRQWNWLIGANGAGKSSVLEAIHVLGTGQTWRHGS-RHV 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  ++  + A + G          L  R     R ++ +   +     L   L +  
Sbjct: 60  LREGDDAYLVS-AHLSGHF--------LALRRRGEEREIRYDGEPLGSAWLLLDILPLQS 110

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           L        SG +  RRR LD  ++  D  +      + R ++ RN  L   +    W  
Sbjct: 111 LHEDNSHFVSGTAEGRRRVLDWGIYYADRYYGTVFRQYRRALQQRNAWLKSDHGRQPW-- 168

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             +  +   G  I   R   + A+   ++   ++ +     LSL      K   +     
Sbjct: 169 --DDGVIVAGEDIQQRRQAHLAAVQLEVVTLWERWSGSLSGLSLHLHSGWKEGMA----- 221

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                 L    + D  +  T  GPHR++L      K       S G+ +V+ +   LA  
Sbjct: 222 --LGDCLLRDHEQDREAGYTHSGPHRANLAFRVRGKPAPDIL-SRGQLRVLGLAYRLAQV 278

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAK 363
           +++       P +L+D+ +A LD   R+     +  +G QIF    T + +  ++  +  
Sbjct: 279 KILKQAGLPLPTILIDDFAAELDASARDWWVNELDLLGVQIFAAVTTARQIPATVGGS-- 336

Query: 364 FMRISNHQ 371
              ++  Q
Sbjct: 337 HFCLAAGQ 344


>gi|330813295|ref|YP_004357534.1| DNA recombination and repair protein RecF [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327486390|gb|AEA80795.1| DNA recombination and repair protein RecF [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 362

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 93/365 (25%), Positives = 171/365 (46%), Gaps = 9/365 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  F+++        + + +  G+NG+GKTN+LE++SF S  +G R     +  +
Sbjct: 4   IEKIKLQNFKSHTLFEKNIPSNNIVIHGNNGIGKTNLLESLSFFSNSKGMRANKLENFLQ 63

Query: 67  IG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                   F     +++      +IS K+  + D+  +   I+      + ++   +   
Sbjct: 64  KQNNIQSEFAQAECQLKQSNYSTNISYKIYKQADQISKNFFIDSKKSSNL-QIANLVNFI 122

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           WL P MD+I       +++F+D+++  ++    R + DF++L   R  LLT  + D  W 
Sbjct: 123 WLSPHMDKIMYEEGSIKKKFIDKIISNLNQDFSRYLSDFKKLSEERIALLTNSH-DIKWI 181

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S +E++MA L   I I R + I  L+ L  E ++   F   K++++  L+         +
Sbjct: 182 SIVESKMAILFYLILIERRKKIKDLNILAEEKLK--LFSRFKINISNELEKYLFDEKKCI 239

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
            E   K  F+ R +D+  +R    P+   +      K +     STGEQK +L+ I LA 
Sbjct: 240 IE-IEKIFFNNRSLDTSIKRNTFSPNTDRVTFFNRTKNLNSELCSTGEQKSILLSIILA- 297

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAK 363
              +        ILL DEIS+H+DE      F  V    +Q + TGT K++F  ++  A 
Sbjct: 298 FGWMYKQRNIQFILLFDEISSHIDEKNMENFFTEVAKFETQAWYTGTKKNIFQVIDNKAF 357

Query: 364 FMRIS 368
           F+ ++
Sbjct: 358 FIDLA 362


>gi|126640118|ref|YP_001083102.1| recombination protein F [Acinetobacter baumannii ATCC 17978]
          Length = 280

 Score =  187 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 117/279 (41%), Gaps = 15/279 (5%)

Query: 99  SVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
             + +++N   +    +L K L +  + P    I    +  RR+ LD ++F ++P     
Sbjct: 7   GEQLMKVNGDTVATQGQLAKLLPLQHIDPQSTDIIDHGAKPRRQLLDWLMFHVEPEFYFA 66

Query: 159 MIDFERLMRGRNRLLT-EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
              + R ++ RN LL        +        +++ G  ++  R+ ++   +      + 
Sbjct: 67  WQYYSRALKQRNTLLKTRRNLSLADLEPWNKMLSDYGEILHSQRLSIVEQWNVYFQNDLS 126

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
           +   P +++ L        +Q          + L +  + D   R T  GPHR+DL +  
Sbjct: 127 QL-LPDLEIELEYSPGFHTEQG-------LMQDLLNQHQKDIERRYTEYGPHRADLRLKT 178

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
                     S G++K++++ + L+   ++   +    ++LLD+++A LD   +  L   
Sbjct: 179 PFGHADDVL-SRGQKKLLIIALKLSQIAMLH-ASNKETVVLLDDLTAELDLTAQQRLIER 236

Query: 338 VTDIGSQIFMTGTD----KSVFDSLNETAKFMRISNHQA 372
           ++ +GSQ+FMT  D    K     L+ + +   + + Q 
Sbjct: 237 LSQLGSQVFMTTLDHASVKKHLHDLSISYQLFSVESGQV 275


>gi|282852317|ref|ZP_06261659.1| DNA replication and repair protein RecF [Lactobacillus gasseri
           224-1]
 gi|282556059|gb|EFB61679.1| DNA replication and repair protein RecF [Lactobacillus gasseri
           224-1]
          Length = 177

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 5/182 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    + +FRN+  L+  FD    IF+G N  GKTN+LEAI FL+  R  R  S  ++
Sbjct: 1   MYLANFELKDFRNFKELKTDFDPHVNIFIGPNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS      FA ++G    + + ++L+ R   + +   +N +  + +      +    
Sbjct: 61  IRFGSK-----FAGLQGRVHKSQLQVELKLRLTANGKKAWVNRLEQKKLSAYVGQMNAIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P    +  G    RRRF+D     I+  +      + ++++ RN  L +     +   
Sbjct: 116 FSPEDLALVKGAPSVRRRFMDLEFGQINSEYLYFSSQYRQVLQQRNNYLKQLSIKKANDQ 175

Query: 185 SI 186
             
Sbjct: 176 VF 177


>gi|167508523|gb|ABZ81468.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
          Length = 289

 Score =  186 bits (472), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 112/286 (39%), Gaps = 21/286 (7%)

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R  + A + R G+     +   V       + ++ LE    R+ +  ++N   +R   E+
Sbjct: 1   RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174
              LR     P    +  G   ERRR+LD +     P       D+++++R R  LL   
Sbjct: 57  LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116

Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226
                  D          ++++AE G ++  AR++++N L+  + +  Q          +
Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176

Query: 227 SLTGFLDGKFDQSFCALKEEYAKK-----LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
                L         A   +Y +      L   R  +      L+GPHR DL +   ++ 
Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLSGLAARRDAEMERGMCLVGPHRDDLELWLGER- 235

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           +     S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 236 VAKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280


>gi|254525401|ref|ZP_05137453.1| RecF protein [Prochlorococcus marinus str. MIT 9202]
 gi|221536825|gb|EEE39278.1| RecF protein [Prochlorococcus marinus str. MIT 9202]
          Length = 319

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 61/328 (18%), Positives = 141/328 (42%), Gaps = 18/328 (5%)

Query: 49  FLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            LS  +  R  S  D+    S            +    D+ + L        + + +N+ 
Sbjct: 1   MLSQLKSNRALSDKDLIENKSDKAVVIG----QINFKDDLKLNLFRNGP---KRIYVNES 53

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +++   E+  ++R      +   I       RR ++D++V  ++P +   +  F RL++ 
Sbjct: 54  ILKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRTWIDKVVSQLEPVYLDLISRFNRLLKQ 113

Query: 169 RNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           R+       F     S    S + QM+ +  +I   R   +  +   +  +    +    
Sbjct: 114 RSHFWRSESFLKTQSSDIVESFDIQMSIISTRIFRRRRRALLKIKPYVEYWHNHLSKSKE 173

Query: 225 KLSLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
           ++ +      K     ++    + ++ A++L + R ++S++ +   GPHR D+     + 
Sbjct: 174 QIDINYLSGIKNISLEEEEEEVISKKIAEQLLNQRSIESLTGKCNFGPHRDDIEFLINNV 233

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
           ++   + S+G+Q+  ++ + +A   L++ T   +PIL+LD++ A LD  ++N L   V  
Sbjct: 234 SVR-KYASSGQQRTFILALKMAELDLLTKTLNVSPILILDDVLAELDLTRQNLLLNSVGK 292

Query: 341 IGSQIFMTGTDKSVFD-SLNETAKFMRI 367
             SQ F++ T    F+ S   +++ + +
Sbjct: 293 -DSQCFISATHLDKFNQSFLSSSQMIHL 319


>gi|33863982|ref|NP_895542.1| recombination protein F [Prochlorococcus marinus str. MIT 9313]
 gi|51316349|sp|Q7V559|RECF_PROMM RecName: Full=DNA replication and repair protein recF
 gi|33635566|emb|CAE21890.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9313]
          Length = 365

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 80/360 (22%), Positives = 150/360 (41%), Gaps = 17/360 (4%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFS 74
           +RNY+ L+L       + +G NG+GK+N+LEAI  L   R  R +S  D+          
Sbjct: 4   YRNYSRLQLELTENRLLVIGPNGIGKSNLLEAIELLGSLRSHRASSDQDLIHWEEQRALL 63

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
                   +    + ++L  +  R     + N   +    +L   LR          +  
Sbjct: 64  RAI----ADDTEKLELELRRQGGR---QARRNGKTLTRQLDLIGPLRCVGFSALDLNLVR 116

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----DSSWCSSIEAQ 189
           G    RR++LDR+V  ++P +   +  F +L+R R++L  +          S   + + Q
Sbjct: 117 GEPALRRQWLDRVVQQLEPIYSDLISRFNKLLRQRSQLWRQWRHIPIQERDSLLDAFDVQ 176

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCALKEEY 247
           MA +  +I+  R   +  L  L   + +  +    +L L      +   +++    +   
Sbjct: 177 MALVSTRIHRRRSRALARLEPLAARWQETLSKHKERLRLDYQPGSQLEGEEAEEPWRLAI 236

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
             +L   R  +       IGPHR ++ +   D +     GS G+Q+ V++ + LA   L+
Sbjct: 237 ETQLLGQRSEEERLGSCRIGPHRDEVRLLLND-SEARRFGSAGQQRTVVLALKLAELELV 295

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFMR 366
               G  P+LLLD++ A LD  ++  L   V +   Q  ++ T    F D   + ++ + 
Sbjct: 296 GELCGEPPLLLLDDVLAELDPGRQLLLLEAVGEK-HQCLVSATHLEGFQDEWQQQSQIIE 354


>gi|110832864|ref|YP_691723.1| DNA replication and repair protein RecF [Alcanivorax borkumensis
           SK2]
 gi|110645975|emb|CAL15451.1| DNA replication and repair protein RecF [Alcanivorax borkumensis
           SK2]
          Length = 332

 Score =  185 bits (470), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 78/342 (22%), Positives = 144/342 (42%), Gaps = 23/342 (6%)

Query: 43  ILEAISFLSPGRGFRRAS-YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101
           +LEAI F+  G    R    + + R G+ +  + +A V G++ +  I I    R    + 
Sbjct: 1   MLEAIYFIGSGGRSFRGGRLSRLVRDGAEAA-TLYAEVVGVQDVHRIGI---RRTPGGID 56

Query: 102 CLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
            ++++    + + E+   L +  L P+   +  G S  RRRF+D  +F ++ +       
Sbjct: 57  AIKLDGQTPKALSEVAVLLPVLALHPTSVELVFGASQLRRRFMDWGMFHVEHQFMPVWRA 116

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
               ++ RN LL  G  +         Q+++   +I   R   +NAL   + E +     
Sbjct: 117 GSAALKQRNALLRAGNPNLRELGFWNQQLSQTSDRIEGLRRGYLNALQRGLDEAL-TVLA 175

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           P +K+ L         Q+     E YA+ L   +  D     +  G HRSD+ ++     
Sbjct: 176 PELKIRLR-------LQTGLHKGESYAQALSRLQSDDLRRGFSQAGFHRSDIRIE-SHGV 227

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
           +     S G+ K+V  G+ LA   +IS  +G    LL+D+++A LDE+ RN L   +   
Sbjct: 228 VARDRLSRGQAKLVAYGLVLAQLPMISQ-SGKVCTLLVDDLAAELDEEHRNQLLGYLATT 286

Query: 342 GSQIFMTGTDKSVFDSLNET--------AKFMRISNHQALCI 375
           G Q  +T  D   + ++            K   + + +   +
Sbjct: 287 GHQTLITALDMPQWAAIVNDNDALQSVENKMFHVEHGKLRSL 328


>gi|323717342|gb|EGB26547.1| DNA replication and repair protein recF [Mycobacterium tuberculosis
           CDC1551A]
          Length = 328

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 119/304 (39%), Gaps = 24/304 (7%)

Query: 63  DVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            + R+G+     ST    +G E   D+ I         V   ++N   +R   ++   LR
Sbjct: 2   PLIRVGTDRAVISTIVVNDGRECAVDLEIATGR-----VNKARLNRSSVRSTRDVVGVLR 56

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EG 176
                P    +  G   +RRR+LD +     P       ++ER++R R  LL        
Sbjct: 57  AVLFAPEDLGLVRGDPADRRRYLDDLAIVRRPAIAAVRAEYERVLRQRTALLKSVPGARY 116

Query: 177 YFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--- 230
             D          ++++AE G ++  AR++++N L+  + +  Q         S+     
Sbjct: 117 RGDRGVFDTLEVWDSRLAEHGAELVAARIDLVNQLAPEVKKAYQLLAPESRSASIGYRAS 176

Query: 231 ----FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                   + D     L       L   R  +      L+GPHR DLI+   D+      
Sbjct: 177 MDVTGPSEQSDTDRQLLAARLLAALAARRDAELERGVCLVGPHRDDLILRLGDQPAK-GF 235

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE   + V + LA  +L+    G  P+LLLD++ A LD  +R AL     +   Q+ 
Sbjct: 236 ASHGEAWSLAVALRLAAYQLL-RVDGGEPVLLLDDVFAELDVMRRRALA-TAAESAEQVL 293

Query: 347 MTGT 350
           +T  
Sbjct: 294 VTAA 297


>gi|313671973|ref|YP_004050084.1| smc domain protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938729|gb|ADR17921.1| SMC domain protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 335

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 146/345 (42%), Gaps = 24/345 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + +  FRN+ +    FD +     G NG GKT+ILE+IS +  G+ F+      +
Sbjct: 1   MYLKDIKLRNFRNHINSIFSFDIK-NYITGKNGSGKTSILESISLIFTGKSFKTNKLKSI 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             I   +FF   +         DI++  +T+     + L IN      +     +  + +
Sbjct: 60  INID-KNFFEISSNFSDDNVNYDITLYYDTK-----KRLTINGKRPENIINFYHNHPVIF 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P  +   S     RR FLDR +F +D  +   ++ + +L+  + + + +   DS    
Sbjct: 114 YSPENEGFLSKEQEIRRNFLDRSIFYLDISYIDSLLGYNKLLELKKKYILKDVKDSLLYK 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           SI  +M+     I   R  +I + ++ I +Y++     + +     ++    D+      
Sbjct: 174 SIHEKMSNYIKDIQNKRSNLIKSFNTYIEKYLRDIPSLNTEFFSLSYIPNHLDEDL---- 229

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                        + + ++ L GPHR  +  +   ++      S G++K + +       
Sbjct: 230 ----------LDKELILKKVLSGPHRDKITFNLNGESFE-NIASFGQRKSLSLCCIYCFL 278

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           +++ + +  + ILLLDE+ + LD ++ +    +      Q F+TG
Sbjct: 279 KVVEDFSKKSIILLLDELESGLDVERVSFFMELFDKY--QYFLTG 321


>gi|886327|gb|AAB53143.1| single-stranded DNA binding protein [Mycobacterium leprae]
          Length = 223

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 12/221 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++   + +FR++  + L  +   T+F G NG GKTN++EA+ + +     R  +   +
Sbjct: 1   MYVRHFGLRDFRSWDHVDLELNPGRTVFFGPNGNGKTNLIEALWYSTTLSSHRVGTDIPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       + +I LE    R+ R  ++N  ++R + E+   LR   
Sbjct: 61  IRAGTIRAIVSTIVVNEG---RECAIDLEIAAGRANRA-RLNRSLVRGMREVVGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-----EGYFD 179
             P    +  G    RRR+LD +     P       D+++++R R  LL          D
Sbjct: 117 FAPEDLALVCGDPANRRRYLDDLATVRQPVIAAVRADYDKVLRQRTALLKSLAAARYRSD 176

Query: 180 S---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
                     + ++AE G ++  AR++++N L+  + +  Q
Sbjct: 177 QGVLDTLDVWDTRLAEHGAELMAARIDLVNQLAPEVEKAYQ 217


>gi|116075787|ref|ZP_01473046.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. RS9916]
 gi|116067102|gb|EAU72857.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. RS9916]
          Length = 356

 Score =  183 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 77/343 (22%), Positives = 150/343 (43%), Gaps = 16/343 (4%)

Query: 21  LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVE 80
           ++L  +A   + +G NGVGK+N+LE++  L   R  R +   D+    +       AR++
Sbjct: 1   MQLEIEAPRLLVIGRNGVGKSNLLESVELLGSLRSHRASQDQDLIHWDARE-----ARLK 55

Query: 81  GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMER 140
                 D  ++L+ R  +  R  + N   +    +L   LR          +  G    R
Sbjct: 56  ARTVDHD-ELELQLR-RKGGRQAKRNGKNLERQLDLIGPLRCVGFSALDLHLVRGEPALR 113

Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF-----DSSWCSSIEAQMAELGV 195
           R +LDR+V  ++P +   +  + RL+R R +L   G         +   + + QMA +  
Sbjct: 114 RSWLDRVVLQLEPIYAELISRYSRLLRQRAQLWRRGRGMPSAERDALLDTFDLQMALIST 173

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFD 253
           +I+  R   +  L  L  ++    +  + +L+L      +   +++    +    ++L  
Sbjct: 174 RIHRRRRRALARLEPLASQWQTHLSQGNEQLTLRYQPGSRLEGEEAEEPWRLAIGEQLKL 233

Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
            R  +       +GPHR ++ +D  +       GS G+Q+ +++ + LA   L+    G 
Sbjct: 234 QRSEEERLGSCRVGPHRDEISLDL-NGNPARRFGSAGQQRTLVLALKLAELELVGELWGQ 292

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
            P+LLLD++ A LD +++  L   V D   Q  ++ T    F+
Sbjct: 293 PPLLLLDDVLAELDPERQLTLLEAVGD-EHQCLVSATHLDAFE 334


>gi|7019618|gb|AAB70169.2| RecF [Sinorhizobium meliloti]
          Length = 176

 Score =  182 bits (462), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 85/167 (50%), Positives = 117/167 (70%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +S+FRNYA+L L  D +H +  G+NG GKTN++E +SFLSPGRG RRA+
Sbjct: 1   MPHKVFLTRLKLSDFRNYATLALDLDQRHVVLTGENGAGKTNLMEGVSFLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           YADV R+G+P  FS FA V+GMEG  +I    +  ++   R L+IN    R VDEL  HL
Sbjct: 61  YADVARVGAPDGFSVFAAVDGMEGSVEIGTGTQGTEEGQSRRLRINGTAARTVDELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           R+ WL P+MD +F+G S +RRRFLDR+V ++DP H RR  +F+R MR
Sbjct: 121 RVLWLTPAMDGLFTGPSADRRRFLDRLVLSLDPEHGRRASEFDRAMR 167


>gi|167508531|gb|ABZ81472.1| recombination protein F [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 289

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 21/286 (7%)

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R  + A + R G+     +   V       + ++ LE    R+ +  ++N   +R   E+
Sbjct: 1   RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174
              LR     P    +  G   ERRR+LD +     P       D+++++R R  LL   
Sbjct: 57  LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116

Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226
                  D          ++++AE G ++  AR++++N L+  + +  Q          +
Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176

Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
                L         A   +Y        L   R  +      L+GPHR DL +   ++ 
Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAEMERGMCLVGPHRDDLELWLGER- 235

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           +     S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 236 VPKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280


>gi|91070222|gb|ABE11142.1| putative DNA repair and genetic recombination protein RecF
           [uncultured Prochlorococcus marinus clone HF10-11H11]
          Length = 297

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 130/280 (46%), Gaps = 11/280 (3%)

Query: 97  DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
            +  + + +N+ +++   E+  ++R      +   I       RR ++D++V  ++P + 
Sbjct: 20  RKGPKRIYVNESILKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRTWIDKVVSQLEPVYL 79

Query: 157 RRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
             +  F RL++ R+       F     +    S + QM+ +  +I   R   +  +   +
Sbjct: 80  DLISRFNRLLKQRSHFWRSESFLKTQSTDIVESFDIQMSIISTRIFRRRRRALLKIKPYV 139

Query: 213 MEYVQKENFPHIKLSLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
             +    +    ++ +      +     ++    + ++ A++L + R +++++ +   GP
Sbjct: 140 EYWHNHLSKSQEQIDINYLSGIQNISPEEEEEEIISKKIAEQLLNQRSIEALTGKCNFGP 199

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           HR D+     + ++   +GS+G+Q+  ++ + +A   L++ T    PIL+LD++ A LD 
Sbjct: 200 HRDDIEFLINNVSVR-KYGSSGQQRTFILALKMAELDLLTKTLNVPPILILDDVLAELDL 258

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRI 367
            ++N L   V    SQ F++ T    F+ SL  +++ + +
Sbjct: 259 TRQNLLLNSVGK-DSQCFISATHLDKFNQSLLGSSQMIHL 297


>gi|78780050|ref|YP_398162.1| DNA replication and repair protein RecF [Prochlorococcus marinus
           str. MIT 9312]
 gi|78713549|gb|ABB50726.1| DNA replication and repair protein RecF [Prochlorococcus marinus
           str. MIT 9312]
          Length = 297

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 131/280 (46%), Gaps = 11/280 (3%)

Query: 97  DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
            +  + + +N+ +++   E+  ++R      +   I       RR ++D++VF ++P + 
Sbjct: 20  RKGPKRIYVNESILKKQSEIKNYIRSVCFCSNDINIVRSEPSYRRTWIDKVVFQLEPVYL 79

Query: 157 RRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
             +  F RL++ R+       F     S  C S + QM+ +  +I   R   +  +   I
Sbjct: 80  DLISRFNRLLKQRSHFWRSESFLNSQSSDICESFDMQMSIISTRIFRRRRRALLKIKPYI 139

Query: 213 MEYVQKENFPHIKLSLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
             +    +    ++ +      +     ++    + ++ A++L + R +++++ +   GP
Sbjct: 140 EYWHNHLSKSKEQIGINYLSGIQNISPEEEEEEVISKKIAEQLLNQRSIEALTGKCNFGP 199

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           HR D+     + ++   +GS+G+Q+  ++ + +A    +S T   +PIL+LD++ A LD 
Sbjct: 200 HRDDIEFLINNISVR-KYGSSGQQRTFILALKMAELDFLSKTLNVSPILILDDVLAELDI 258

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRI 367
            ++N L   V    SQ F++ T    F+ S   +++ + +
Sbjct: 259 TRQNLLLNSVGK-DSQCFISATHLDKFNQSFLGSSQMIYL 297


>gi|157414178|ref|YP_001485044.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9215]
 gi|157388753|gb|ABV51458.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9215]
          Length = 297

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 55/280 (19%), Positives = 129/280 (46%), Gaps = 11/280 (3%)

Query: 97  DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
               + + +N+ +++   E+  ++R      +   I       RR ++D++V  ++P + 
Sbjct: 20  RNGPKRIYVNESLLKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRTWIDKVVSQLEPVYL 79

Query: 157 RRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
             +  F RL++ R+       F     S    S + QM+ +  +I   R   +  +   I
Sbjct: 80  DLISRFNRLLKQRSHFWRSESFLKTQSSDIVESFDIQMSIISTRIFRRRRRALLKIKPYI 139

Query: 213 MEYVQKENFPHIKLSLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
             +    +    ++ +      K     ++    + ++ A++L + R ++S++ +   GP
Sbjct: 140 EYWHNHLSKSKEQIDINYLSGIKNISPEEEEEEVISKKIAEQLLNQRSIESLTGKCNFGP 199

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           HR D+     + ++   +GS+G+Q+  ++ + +A   L++ T   +PIL+LD++ A LD 
Sbjct: 200 HRDDIEFLINNVSVR-KYGSSGQQRTFILALKMAELDLLTKTLNVSPILILDDVLAELDL 258

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRI 367
            ++N L   V    SQ F++ T    F+ S   +++ + +
Sbjct: 259 TRQNLLLNSVGK-DSQCFISATHLDKFNQSFLGSSQMIHL 297


>gi|254491212|ref|ZP_05104393.1| DNA replication and repair protein RecF [Methylophaga thiooxidans
           DMS010]
 gi|224463725|gb|EEF79993.1| DNA replication and repair protein RecF [Methylophaga thiooxydans
           DMS010]
          Length = 325

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 131/321 (40%), Gaps = 16/321 (4%)

Query: 52  PGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
            GR FR  +   + +       + FAR         I ++ + +   S   +++N+  ++
Sbjct: 1   MGRSFRSRALKHLVKKQQQR-LTVFAR---SMDQTPIGLQYDLQ---SGLLIRLNNAPLK 53

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + +L  HL + ++  +  + F      RRR +D  VF ++         +++ ++ RN 
Sbjct: 54  RLSDLAAHLPLQFIPANCHQFFELGPKYRRRMVDWGVFHVEHSFNFHWQSYKKALQQRNA 113

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            + + Y   +  +  +  + + G+KI   R   +  L    +   ++        S    
Sbjct: 114 AIRK-YKPCNEIALWDTHLIKHGMKITEFRQGYLQQLVKEFLPLFRQLCPELETASFV-- 170

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
              ++ Q +   + ++A  L +  + D     T  G H +D  +   D        S G+
Sbjct: 171 --LRYQQGWNK-ETDFADYLRENIERDRALGYTRSGAHAADWSLKIDDGD-PYEMLSRGQ 226

Query: 292 QKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           QK+  + + +A  +L++        +LL+D++S+ LD   +N +   +  +  Q F++ T
Sbjct: 227 QKLFFLALSMAQIKLLAAQKEITNSVLLIDDLSSELDWHHQNTVIETLRTLPVQAFISST 286

Query: 351 DKSVFDSLN-ETAKFMRISNH 370
           +  +   L  +  K   + + 
Sbjct: 287 NDDLSQLLKADNEKKFHVKHG 307


>gi|88807865|ref|ZP_01123376.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. WH 7805]
 gi|88787904|gb|EAR19060.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. WH 7805]
          Length = 345

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/342 (22%), Positives = 151/342 (44%), Gaps = 17/342 (4%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
            +G NG+GK+N+LE++  L   R  R +  AD+    +P      + ++      +  ++
Sbjct: 1   MIGSNGIGKSNLLESVELLGSLRSHRSSQDADLIHWDAPRALLKASCMD------ETEVE 54

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           LE R     +  +   V+ R +D L   LR          +  G    RR +LDR+V  +
Sbjct: 55  LELRRRGGRQARRNGKVLQRQLD-LIGPLRCVGFSALDLHLVRGEPALRRSWLDRVVLQL 113

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFD-----SSWCSSIEAQMAELGVKINIARVEMIN 206
           +P +   +  + RL+R R++    G  +      +   S + QMA +  +I+  R   + 
Sbjct: 114 EPIYAELIGRYNRLLRQRSQFWRRGGGNNTFEHQALLDSFDNQMALVCTRIHRRRRRALL 173

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDG--KFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
            L  L   +  + +  H +L L        + +++    +    ++L   R  +      
Sbjct: 174 RLEPLAAAWQSRLSQGHEQLELRYSPGSVLEGEEAEEPWRLAIEQQLHRQRGEEERLGSC 233

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
            +GPHR ++ +   +  +    GS+G+Q+ +++ + LA   L+    G  P+LLLD++ A
Sbjct: 234 RVGPHRDEIDM-LLNGTVARRFGSSGQQRTLVLALKLAELELVGELCGHPPLLLLDDVLA 292

Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFM 365
            LD  ++ AL   V D   Q  ++ T    F+    + ++ +
Sbjct: 293 ELDPQRQLALLEAVGDT-HQCLVSATHLDAFEGEWRQRSQIL 333


>gi|167508533|gb|ABZ81473.1| recombination protein F [Mycobacterium avium subsp. avium]
 gi|167508535|gb|ABZ81474.1| recombination protein F [Mycobacterium avium subsp. silvaticum]
          Length = 289

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 21/286 (7%)

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R  + A + R G+     +   V       + ++ LE    R+ +  ++N   +R   E+
Sbjct: 1   RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174
              LR     P    +  G   ERRR+LD +     P       D+++++R R  LL   
Sbjct: 57  LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116

Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226
                  D          ++++AE G ++  AR++++N L+  + +  Q          +
Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176

Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
                L         A   +Y        L   R  +      L+GPHR DL +   ++ 
Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAEMERGMCLVGPHRDDLELWLGER- 235

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           +     S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 236 VAKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280


>gi|167508529|gb|ABZ81471.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
          Length = 289

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/286 (22%), Positives = 112/286 (39%), Gaps = 21/286 (7%)

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R  + A + R G+     +   V       + ++ LE    R+ +  ++N   +R   E+
Sbjct: 1   RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174
              LR     P    +  G   ERRR+LD +     P       D+++++R R  LL   
Sbjct: 57  LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116

Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226
                  D          ++++AE G ++  AR++++N L+  + +  Q          +
Sbjct: 117 SGARHRGDRGALETLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176

Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
                L         A   +Y        L D R  +      L+GPHR DL +   ++ 
Sbjct: 177 GYRSSLGAAAAAEVNAGDRDYLEAALLAGLADRRDAELERGMCLVGPHRDDLELWLGEQ- 235

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           +     S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 236 VAKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280


>gi|167508537|gb|ABZ81475.1| recombination protein F [Mycobacterium avium subsp.
           paratuberculosis]
          Length = 289

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 21/286 (7%)

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R  + A + R G+     +   V       + ++ LE    R+ +  ++N   +R   E+
Sbjct: 1   RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174
              LR     P    +  G   ERRR+LD +     P       D+++++R R  LL   
Sbjct: 57  LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116

Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226
                  D          ++++AE G ++  AR++++N L+  + +  Q          +
Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176

Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
                L         A   +Y        L   R  +      L+GPHR DL +   ++ 
Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLAGLAAHRDAELERGMCLVGPHRDDLELWLGEQ- 235

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           +     S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 236 VAKGFASHGESWSLALSLRLAAFELL-RADESDPVLLLDDVFAELD 280


>gi|167508525|gb|ABZ81469.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
          Length = 289

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 21/286 (7%)

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R  + A + R G+     +   V       + ++ LE    R+ +  ++N   +R   E+
Sbjct: 1   RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174
              LR     P    +  G   ERRR+LD +     P       D+++++R R  LL   
Sbjct: 57  LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116

Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226
                  D          ++++AE G ++  AR++++N L+  + +  Q          +
Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176

Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
                L         A   +Y        L   R  +      L+GPHR DL +   ++ 
Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAELERGMCLVGPHRDDLELWLGEQ- 235

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           +     S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 236 VAKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280


>gi|282889709|ref|ZP_06298248.1| hypothetical protein pah_c004o056 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500283|gb|EFB42563.1| hypothetical protein pah_c004o056 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 236

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 7/240 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L++ +FR+Y   +  F     +  G N +GKT ILEAI FL  GR FR +   D+
Sbjct: 1   MFLHTLHLHQFRSYREAKFTFSPSINLICGPNAIGKTTILEAIHFLMTGRSFRTSQINDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G+  F      +E       I  KL+   +   R + +N         L        
Sbjct: 61  IQKGTSYF-----SIEASFIKQGIEQKLKIFYNGKERKIVLNQTPYYSFTHLLGMFYGVC 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           + P    +  G  + RR FLD  +   DP +  ++  F R MR RN LL     + +   
Sbjct: 116 MSPDDSALIKGAPLMRRSFLDLQLAQSDPLYVHKLTRFTRAMRQRNYLLK--GKNLATIE 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           S E +MA     +   R  +   L     +  ++ +    KL +          S   LK
Sbjct: 174 SWEYEMAHAASYLTFKREVLAAQLHQNGQQIYEQLSAGREKLGVVYKTTAPRSASEEILK 233


>gi|167508539|gb|ABZ81476.1| recombination protein F [Mycobacterium avium subsp.
           paratuberculosis]
          Length = 289

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 21/286 (7%)

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R  + A + R G+     +   V       + ++ LE    R+ +  ++N   +R   E+
Sbjct: 1   RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174
              LR     P    +  G   ERRR+LD +     P       D+++++R R  LL   
Sbjct: 57  LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116

Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226
                  D          ++++AE G ++  AR++++N L+  + +  Q          +
Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176

Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
                L         A   +Y        L   R  +      L+GPHR DL +   ++ 
Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAELERGMCLVGPHRDDLELWLGEQ- 235

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           +     S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 236 VAKGFASHGESWSLALSLRLAAFELL-RADESDPVLLLDDVFAELD 280


>gi|167508527|gb|ABZ81470.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
          Length = 289

 Score =  180 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 110/286 (38%), Gaps = 21/286 (7%)

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R  + A + R G+     +   V       + ++ LE    R+ +  ++N   +R   E+
Sbjct: 1   RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174
              LR     P    +  G   ERRR+LD +     P       D+++++R R  LL   
Sbjct: 57  LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116

Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226
                  D          ++++AE G ++  AR++++N L+  + +  Q          +
Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176

Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
                L             +Y        L   R  +      L+GPHR DL +   ++ 
Sbjct: 177 GYRSSLGVAASAEVNDGDRDYLEAALLAGLAARRDAELERGMCLVGPHRDDLELWLGEQ- 235

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           +     S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 236 VAKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280


>gi|167508541|gb|ABZ81477.1| recombination protein F [Mycobacterium avium subsp.
           paratuberculosis]
 gi|167508543|gb|ABZ81478.1| recombination protein F [Mycobacterium avium subsp.
           paratuberculosis]
          Length = 289

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 112/286 (39%), Gaps = 21/286 (7%)

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R  + A + R G+     +   V       + ++ LE    R+ +  ++N + +R   E+
Sbjct: 1   RVGTDAPLIRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRLPVRSTREV 56

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174
              LR     P    +  G   ERRR+LD +     P       D+++++R R  LL   
Sbjct: 57  LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116

Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226
                  D          ++++AE G ++  AR++++N L+  + +  Q          +
Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176

Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
                L         A   +Y        L   R  +      L+GPHR DL +   ++ 
Sbjct: 177 GYRSSLGAAASAEVNAGDRDYLEAALLAGLAARRDAELERGMCLVGPHRDDLELWLGEQ- 235

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           +     S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 236 VAKGFASHGESWSLALSLRLAAFELL-RADESDPVLLLDDVFAELD 280


>gi|123969312|ref|YP_001010170.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. AS9601]
 gi|123199422|gb|ABM71063.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. AS9601]
          Length = 297

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 128/280 (45%), Gaps = 11/280 (3%)

Query: 97  DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
            +  + + +N+ +++   E+  ++R      +   I       RR ++D++V  ++P + 
Sbjct: 20  RKGPKRIYVNETILKKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRIWIDKVVSQLEPVYL 79

Query: 157 RRMIDFERLMRGRNRLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
             +  F R+++ R+       F     S    S + QM+ +  +I   R   +  +   +
Sbjct: 80  DLISRFNRILKQRSHFWRSESFLKTQSSDIVESFDIQMSIISTRIFRRRRRALLKIKPYV 139

Query: 213 MEYVQKENFPHIKLSLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
             +    +    ++ +      +     ++    + ++  ++L + R +++++ +   GP
Sbjct: 140 EYWHNHLSKSKEQIDINYLSGIQNISPEEEEEEVISKKIVEQLLNQRSIEALTGKCNFGP 199

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           HR D+     + ++   +GS+G+Q+  ++ + +A   L++ T    PIL+LD++ A LD 
Sbjct: 200 HRDDVEFLINNVSVR-KYGSSGQQRTFILALKMAELDLLTKTLNVPPILILDDVLAELDL 258

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRI 367
            ++N L   V    SQ F++ T    F+ S   +++ + +
Sbjct: 259 TRQNLLLNSVGK-DSQCFISATHLDKFNQSFVGSSQMIHL 297


>gi|167508521|gb|ABZ81467.1| recombination protein F [Mycobacterium avium subsp. hominissuis]
          Length = 289

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 62/286 (21%), Positives = 111/286 (38%), Gaps = 21/286 (7%)

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R  + A + R G+     +   V       + ++ LE    R+ +  ++N   +R   E+
Sbjct: 1   RVGTDAPLIRAGADRTVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREV 56

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-- 174
              LR     P    +  G   ERRR+LD +     P       D+++++R R  LL   
Sbjct: 57  LGVLRAVLFAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSL 116

Query: 175 ---EGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKL 226
                  D          ++++AE G ++  AR++++N L+  + +  Q          +
Sbjct: 117 SGARHRGDRGALDTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASI 176

Query: 227 SLTGFLDGKFDQSFCALKEEY-----AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
                L         A   +Y        L   R  +      L+GPHR DL +   ++ 
Sbjct: 177 GYRSSLGAAAAAEVNAGDRDYLEAALLAGLAARRYAELERGVCLVGPHRDDLELWLGEQ- 235

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           +     S GE   + + + LA   L+       P+LLLD++ A LD
Sbjct: 236 VAKGFASHGESWSLALSLRLAAYELL-RADESDPVLLLDDVFAELD 280


>gi|291520352|emb|CBK75573.1| hypothetical protein CIY_30620 [Butyrivibrio fibrisolvens 16/4]
          Length = 229

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 52/235 (22%), Positives = 104/235 (44%), Gaps = 13/235 (5%)

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW---CSSIEAQMAELGVKINIA 200
           +D  +  ID  +   + ++ + +  RN LL E  +        S  + Q+   G KI   
Sbjct: 1   MDAELCQIDKIYLSDLTNYNKALNQRNALLKEIIYKPELKETLSIWDEQLINYGKKIITR 60

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           R + IN ++ ++ +   K       +      D  +D +   +   +  +L   ++ D  
Sbjct: 61  RQKFINDINIIVKDIHSKITNGKENI------DVSYDPNIEDIF--FLDELVKNKEKDLR 112

Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
             +T +GPHR D+ +      I    GS G+Q+   + + L+  +L+ +T    PILLLD
Sbjct: 113 FCQTSVGPHRDDIKITVDGIDIR-KFGSQGQQRTCALSLKLSEIKLVEDTINDKPILLLD 171

Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           ++ + LD+++++ L   + D  + I  TG D+ V +         +++N     I
Sbjct: 172 DVLSELDKNRQSDLLDNLLDTQTIITCTGIDEFVKNRFKLN-TVYKVTNGSIDLI 225


>gi|313621667|gb|EFR92455.1| DNA replication and repair protein RecF [Listeria innocua FSL
           S4-378]
          Length = 152

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 5/157 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1   MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A++EG       ++ LE    +  +  ++N +  + + +   +L +  
Sbjct: 61  IMWEKEE-----AKMEGRVVKRGQTVPLELAITQKGKRAKVNHMEQKKLSQYVGNLNVVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
             P    +  G    RRRFL+  +  + P +   + +
Sbjct: 116 FAPEDLSLVKGAPGVRRRFLNMEIGQMQPIYLHNLSE 152


>gi|317472422|ref|ZP_07931747.1| DNA replication and repair protein RecF [Anaerostipes sp.
           3_2_56FAA]
 gi|316900142|gb|EFV22131.1| DNA replication and repair protein RecF [Anaerostipes sp.
           3_2_56FAA]
          Length = 216

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 15/223 (6%)

Query: 155 HRRRMIDFERLMRGRNRLLTEGYFDSSWCSS---IEAQMAELGVKINIARVEMINALSSL 211
           +  ++  + R+M  RN LL +  +      +    + Q+ + G ++   R + I  L+ +
Sbjct: 2   YLHQLSSYNRVMAQRNNLLKQLAYQRELLDTLDSWDLQLVKYGSEVIRYRQKFIEDLNEI 61

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           I E  +       K+ L       +D        E+   L   R++D     T  GPHR 
Sbjct: 62  IREIHKNLTGKKEKIVLKYDYSVNYD--------EFLTVLQRKREIDLKYASTGAGPHRD 113

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           D+        I    GS G+Q+   + + LA   L+   TG  PILLLD++ + LD  ++
Sbjct: 114 DIEFLVNGIDIR-KFGSQGQQRTAALSLKLAQIELVKRQTGETPILLLDDVLSELDSSRK 172

Query: 332 NALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFMRISNHQAL 373
           N L   + DI  Q  +T T    F +S  +  K  ++ + + +
Sbjct: 173 NYLLDSIKDI--QTLITCTGLEEFINSHLQIDKMFQVKSGKIV 213


>gi|124023971|ref|YP_001018278.1| recombination protein F [Prochlorococcus marinus str. MIT 9303]
 gi|123964257|gb|ABM79013.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9303]
          Length = 352

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/344 (21%), Positives = 143/344 (41%), Gaps = 17/344 (4%)

Query: 31  IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
           + +G NG+GK+N+LEA+  L   R  R +S  D+                  +    + +
Sbjct: 7   LVIGPNGIGKSNLLEAVELLGSLRSHRASSDQDLIHWEEQRALLRAI----ADDTEKLEL 62

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           +L  +  R     + N   +    +L   LR          +  G    RR++LDR+V  
Sbjct: 63  ELRRQGGR---QARRNGKTLTRQLDLIGPLRCVGFSALDLNLVRGEPALRRQWLDRVVQQ 119

Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYF-----DSSWCSSIEAQMAELGVKINIARVEMI 205
           ++P +   +  F +L+R R++L  +          S   + + QMA +  +I+  R   +
Sbjct: 120 LEPIYSDLISRFNKLLRQRSQLWRQWRHIPIQERDSLLDAFDVQMALVSTRIHRRRSRAL 179

Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFDGRKMDSMSRR 263
             L  L   + +  +    +L L      +   +++    +     +L D R  +     
Sbjct: 180 ARLEPLAARWQETLSKQKERLRLDYQPGSQLEGEEAEEPWRLAIETQLLDQRSEEERLGS 239

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
             IGPHR ++ +   D +     GS G+Q+ V++ + LA   L+    G  P+LLLD++ 
Sbjct: 240 CRIGPHRDEVRLLLND-SEARRFGSAGQQRTVVLALKLAELELVGELCGEPPLLLLDDVL 298

Query: 324 AHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFMR 366
           A LD  ++  L   V +   Q  ++ T    F D   + ++ + 
Sbjct: 299 AELDPGRQLLLLEAVGEK-HQCLVSATHLEGFQDEWQQRSQIIE 341


>gi|126697102|ref|YP_001091988.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9301]
 gi|126544145|gb|ABO18387.1| putative DNA repair and genetic recombination protein RecF
           [Prochlorococcus marinus str. MIT 9301]
          Length = 265

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 120/266 (45%), Gaps = 11/266 (4%)

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           +   E+  ++R      +   I       RR ++D++V  ++P +   +  F RL++ R+
Sbjct: 2   KKQSEIKNYIRSVCFCSNDIDIVRSEPSYRRTWIDKVVSQLEPVYLDLISRFNRLLKQRS 61

Query: 171 RLLTEGYF----DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
                  F     +    S + QM+ +  +I   R   +  +   +  +    +    ++
Sbjct: 62  HFWRSESFLKTQSTDIVESFDIQMSIISTRIFRRRRRALLKIKPYVEYWHNHLSKSQEQI 121

Query: 227 SLTGFLDGK----FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
            +      +     ++    + ++ A +L + R +++++ +   GPHR D+     + ++
Sbjct: 122 DINYLSGIQNISPEEEEEEVISKKIADQLLNQRSIEALTGKCNFGPHRDDIEFLINNVSV 181

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
              +GS+G+Q+  ++ + +A   L++ T    PIL+LD++ A LD  ++N L   V    
Sbjct: 182 R-KYGSSGQQRTFILALKMAELDLLNKTLNIPPILILDDVLAELDLTRQNLLLNSVGK-D 239

Query: 343 SQIFMTGTDKSVFD-SLNETAKFMRI 367
           SQ F++ T    F+ S   +++ + +
Sbjct: 240 SQCFISATHLDKFNQSFIGSSQMIHL 265


>gi|95929988|ref|ZP_01312728.1| Recombinational DNA repair ATPase (RecF pathway)-like
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133957|gb|EAT15616.1| Recombinational DNA repair ATPase (RecF pathway)-like
           [Desulfuromonas acetoxidans DSM 684]
          Length = 331

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/354 (18%), Positives = 140/354 (39%), Gaps = 33/354 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYADVT 65
           I+ + +  FR +  L +  + +  I  G NG GKT+++E++   S  R    +    D+ 
Sbjct: 2   IEKIKLQNFRCFKELEINLNKK-NIIYGLNGSGKTSLVESLYLCSNYRTLSPKTKNNDLI 60

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
           +  S +           +    +SI          + + ++     V+    K ++  + 
Sbjct: 61  KFNSENAEIFI----NTKNKLRLSIS-------KNKKIYLDGFESDVLS-FVKSIKCVFF 108

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +     IF      RR++ D+++F +D  +   +  + +++R RN    +          
Sbjct: 109 LSDEIFIFFSKPSSRRKYFDQLIFNLDSDYLLLVQKYIKILRNRNIQCKKNKVLE--LDI 166

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
               + ++  +I+  +   +  L+    +                 L  K + S    K+
Sbjct: 167 WTEYLKDINNRISEKKKIYVENLTKEFKKV------------SNDLLGKKVEFSIEIDKK 214

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           EY   + +    +  + RTL G H  D  + Y D     ++ S G++K+ L  I L+H  
Sbjct: 215 EYFPGIEN---KEIENGRTLFGHHLEDYSL-YIDGVNLNSYSSNGQKKLFLFLIKLSHLS 270

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
           L S    +   L++D++ + LD    N++   ++ I  Q+ +T  DK      N
Sbjct: 271 L-SEFYSYNQALIIDDLESELDNITINSILDYLSKINKQVIITNIDKLNISGFN 323


>gi|218683066|ref|ZP_03530667.1| recombination protein F [Rhizobium etli CIAT 894]
          Length = 166

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 78/162 (48%), Positives = 111/162 (68%)

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           I E  +   FP   L L+GF+DG+F +    L+++YA  L + R  D+ + RTL GPHR+
Sbjct: 4   IEETHESSPFPSASLQLSGFMDGQFSRPSVDLEDDYAAMLAESRYRDAGAGRTLDGPHRA 63

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           DLIV + +KA+     STGEQK +LVG+ LAHARL+ N TG APILLLDEI+AHLDE++R
Sbjct: 64  DLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGNLTGHAPILLLDEIAAHLDENRR 123

Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
            ALF ++  +G Q FMTGTD+S+F +L + A+   +++ +  
Sbjct: 124 AALFDLIDGLGGQAFMTGTDRSMFSALGDRAQVFTVADGKVF 165


>gi|15835874|ref|NP_300398.1| ATPase [Chlamydophila pneumoniae J138]
 gi|8978713|dbj|BAA98549.1| RecF-ABC superfamily ATPase [Chlamydophila pneumoniae J138]
          Length = 207

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 45/177 (25%), Positives = 73/177 (41%), Gaps = 10/177 (5%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   +KI  L +  FRN++ L +    +          GKTN+LEA+  LS GR FR   
Sbjct: 1   MPMFMKICSLKLKNFRNHSDLEISLAPKLNY-----AQGKTNLLEALYVLSLGRSFRTQH 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D    GS  FF     +E       +   L    D+  + +  N + I+ + +L   +
Sbjct: 56  LTDTITFGSSHFF-----LETQFEKDHLPQALSIYTDKQGKKICYNQLPIKTLSQLIGKV 110

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
            I         + SG   +RR FL+ ++   D  +   +  + R ++ RN LL    
Sbjct: 111 PIVLFSSKDRLLISGAPADRRLFLNLLLSQCDNHYTLCLSYYHRALQQRNALLKSKQ 167


>gi|206895150|ref|YP_002247528.1| RecF/RecN/SMC N domain, putative [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206737767|gb|ACI16845.1| RecF/RecN/SMC N domain, putative [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 342

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 148/371 (39%), Gaps = 32/371 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ + +  FRN  +  +      T+ +G+N  GKT++LE++  +S GR FR  +  D+ 
Sbjct: 3   RVRSIKLYNFRNLLNQEIEIPDGLTVLMGENMQGKTSLLESLFIVSTGRSFRTRNIGDIV 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV-DELNKHLRISW 124
           R G          V+G   +  +S++         R L +N   I      L    ++ +
Sbjct: 63  RWGENQA-QIELSVDGANVVFSVSLE------PKARSLLLNGERISSFESPLAG--KVLY 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  + S  S  RR F DR++   D  + R    + +L+  RN +L+ G+++     
Sbjct: 114 YSDEYLDLVSTPSGTRRLF-DRLLELSDRENMRLAAQYRKLVSERNSMLSSGFYNEPLDE 172

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +  ++ ++  K    R   +  + + +        FP +          KF      +K
Sbjct: 173 VLSDRIDKISQKWREKRQAFLQLVQASL-----NLRFPQV---FDSSYSFKFSVETSDIK 224

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                       ++ + + TL G  R  +++D  +K ++    S G  K++L  +F+  A
Sbjct: 225 ---------NLSLEMLKKTTLFGFQRDKILLDVNNKEVSTV-ASRGFLKILLTFVFVRTA 274

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            LI    G   +LL+D+ +A++DE     +  ++ +    I    T       L      
Sbjct: 275 ELIHEKQG-YVLLLMDDFNANIDELHWKKVLELLPERH--IIAATTKTWEKADLGRPYSI 331

Query: 365 MRISNHQALCI 375
           +     +   I
Sbjct: 332 LACEQGRVFPI 342


>gi|257462456|ref|ZP_05626868.1| RECF protein [Fusobacterium sp. D12]
 gi|317060113|ref|ZP_07924598.1| DNA replication and repair protein recF [Fusobacterium sp. D12]
 gi|313685789|gb|EFS22624.1| DNA replication and repair protein recF [Fusobacterium sp. D12]
          Length = 248

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 106/254 (41%), Gaps = 8/254 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  +  +  RN  + ++ F A   +F G NG GKT+ILEAI F   G  FR    +++
Sbjct: 1   MRVLSIQCNHIRNLKNQKISFCAPIQVFYGKNGQGKTSILEAIYFAGTGLSFRTRHTSEM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +    S F   +       +++ +E          +          E   ++ + +
Sbjct: 61  ITY-TEDTLSCFLEYQDQFSEKSLAVSIENDKKFFFFLGK-----KISQMEFYGNVNMIF 114

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            +P    + +G    RR F+DR +   D  +  ++  F  L++ RN+ L E  +++   +
Sbjct: 115 YIPEDVMLINGSPSLRRLFIDREISQTDSFYLHQLKKFSHLLKIRNKYLKEKLYENEEYA 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--SFCA 242
             E +  E G  +   R + I  +S+ + +  Q       KL +        ++  S   
Sbjct: 175 IYEKEFVECGSYLIEQRKKYIQEISNFVEKIYQNLFDSEKKLKIFYKSCFNLEKVNSLSE 234

Query: 243 LKEEYAKKLFDGRK 256
           ++E + K++   R+
Sbjct: 235 IQEAFWKEITKKRE 248


>gi|291288760|ref|YP_003505576.1| Recombinational DNA repair ATPase (RecF pathway)- like protein
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885920|gb|ADD69620.1| Recombinational DNA repair ATPase (RecF pathway)- like protein
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 340

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 141/353 (39%), Gaps = 25/353 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +    + I  FRN+      F+       GDNG GKT++LE++  L   + FR+ +    
Sbjct: 1   MYTNRVRILNFRNHIDSLYDFE-NINYIEGDNGTGKTSVLESLFVLFNLKSFRQQTVKKA 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R     F  +   ++G +       + ET  +     L+ ++  +    E      +  
Sbjct: 60  IRFKQDFFLVSAKCLDG-DFQRTFHYRYETSAE-----LKDDEGKVSGKAEYLSMHPVIC 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P   ++ S    +RRRF+DR+ F ID  H  R+ D  +L   +   L +   + ++  
Sbjct: 114 YSPEYGQVVSDDQDDRRRFIDRLSFQIDRGHFDRLTDLRKLNLMKVSELKKDRLNRAYID 173

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           S+  ++ EL  KI+  R      ++  + +   +  F           D  F   F +  
Sbjct: 174 SVNEKIVELSEKISGTRECTAGQINDHMRQTYAELGF-----------DDGFRLDFRSNV 222

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           ++    L      + + RR L G  R        D  +     S G++K  ++    +  
Sbjct: 223 KDKNLLL-----KEIVDRRLLYGSSRDRFY-SVSDGRVYDRFSSFGQKKTFVLITLASGL 276

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           +L+        I LLD+  A LD+ +   LF +  D  +QIF+TG   + F S
Sbjct: 277 KLLEKNGKNGIITLLDDFEAGLDKSRIERLFHLF-DTSAQIFITGVKNTNFSS 328


>gi|213421125|ref|ZP_03354191.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 216

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 13/229 (5%)

Query: 43  ILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           +LEAI  L  GR FR      V R    +F     R++G E    I +  + + D  VR 
Sbjct: 1   MLEAIYTLGHGRAFRSLQPGRVIRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR- 58

Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
             I+      + EL   + +  + P    + +G    RR FLD   F  +        + 
Sbjct: 59  --IDGTDGHKIAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNL 116

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           +RL++ RN  L +           + ++  L  +I+  R E  +A++  + +  Q +  P
Sbjct: 117 KRLLKQRNAALRQ-VSRYEQLRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLP 174

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              L+ +     + +        +YA  L    + D M   T  GPH++
Sbjct: 175 EFSLTFSFQRGWEKET-------DYADVLERSFERDRMLTYTAHGPHKA 216


>gi|291278435|ref|YP_003495270.1| hypothetical protein DEFDS_0002 [Deferribacter desulfuricans SSM1]
 gi|290753137|dbj|BAI79514.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 333

 Score =  165 bits (419), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 144/355 (40%), Gaps = 30/355 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I   RN   L + FD +    +G+NG GKT ILE+I      + FR +   ++
Sbjct: 1   MFLDELKIVNVRNIEHLSIKFDHKRNYIIGENGSGKTTILESIVTSLYRKSFRTSKIEEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             I SP     F  +  +     ++           +   IN+  I  +  +  H  +  
Sbjct: 61  KSINSP-----FLSISSIFIKNGLNYTFTFNYSDKKKLHLINNKKIDKLLNIISHFPLIV 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P  + +    +  +  FLD++V   D  ++  +  F +L++ + +L+TE   D+   +
Sbjct: 116 HSPYYEGLTDKSNRNKLTFLDKIVILADKSYKENLSKFNKLLKHKRKLITESN-DTKLIN 174

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +I   ++E+   I   R   +  L+  + +Y   E+   I + L                
Sbjct: 175 TINDLLSEIYELIYKKRKNFLEQLNMRLKDY---ESTKKISIELK--------------- 216

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                K  D    +   ++ L+  +   + +   +K I     S G++K + + I  +  
Sbjct: 217 ---KNKTKDVFLNELALKKILLTQYSQKIYITSENKNIE-NLLSFGQKKELSIFIIYSFL 272

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
           ++I        I+LLD+  A LDE K    + I +D  +Q+ +TG D      +N
Sbjct: 273 KIIEEIIKDGIIILLDDFEAGLDESKVKNFYEIFSD--NQLILTGVDNKYLSGIN 325


>gi|313829192|gb|EFS66906.1| DNA replication and repair protein RecF [Propionibacterium acnes
           HL063PA2]
          Length = 204

 Score =  165 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 9/199 (4%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ ++ L + +FR+Y    +   A  T F+G NG GKTN++EA+ +LS     R ++   
Sbjct: 7   RMFVERLELVDFRSYVRADVPMAAGATTFIGSNGQGKTNLVEAVEYLSTLSSHRVSNDTP 66

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R+G+           G +    + +++E    R+ R       + R  D L   LR  
Sbjct: 67  LVRLGADQAVVRGRVRAGTDDARSLLLEVEINARRANRARINRAPLTRPRDIL-GVLRTV 125

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175
              P+   +  G   +RR FLD +V    PR      D+ER+++ RN LL          
Sbjct: 126 VFSPNDLAVVRGDPSDRRAFLDGLVVTRWPRMAAVKSDYERVLKQRNALLKSLSGKGRSA 185

Query: 176 GYFDSSWCSSIEAQMAELG 194
           G    +     + ++A +G
Sbjct: 186 GAEIGAAVDIWDNELATIG 204


>gi|332976001|gb|EGK12872.1| DNA replication and repair protein RecF [Psychrobacter sp.
           1501(2011)]
          Length = 449

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 153/456 (33%), Gaps = 98/456 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I   RN  ++ +    Q  +FVG NG GKT++LE++  LS G+ FR         
Sbjct: 2   LTQLSIHHLRNLQAVHI-PVGQCNVFVGANGSGKTSLLESLYLLSRGKSFRHHQPKRYIS 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +P   +  A+       +  S+ ++   D S   ++++   + V   L K L    + 
Sbjct: 61  HHAP-HTTVHAKF-----ASGSSMAIQKAQDASS-IMRLDQQAVYVQSALTKQLPTLLID 113

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW---- 182
           PS   I    S  RR+ LD + F + P    + + ++RL++ RN LL +    S +    
Sbjct: 114 PSSMDILEIGSGSRRQLLDWITFHVKPGFHPQWLSYQRLLKQRNALLKQSPRLSDYQRKE 173

Query: 183 CSSIEAQMAELGVKINIARVEMI------------------------------------- 205
            ++ +  +A     I   R +                                       
Sbjct: 174 LAAWDKGLANHAALITHYRQQAFEEWQPLFNDLLKQLLPAYAPFIQLRFSAGYNTEIPLD 233

Query: 206 ----NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                 L+        +       + +    D    Q      E    +  +  + ++  
Sbjct: 234 ELLQQRLAQDCQSGYTRIGCHRADVQVLWVEDEAARQQVNQTSENKRLQSANNEQQEAPL 293

Query: 262 RRTLIGPHRS------------------------------DLIVDYCDKAITIAHGSTGE 291
             TL                                    D +V    +       S GE
Sbjct: 294 --TLDSVQTDYPELFNDSVLEDDQTDNGHELDSDQVFEEEDEVVLGNVREQAANILSRGE 351

Query: 292 QKVVLVGIFLAHARLISNTTGFAPI----------LLLDEISAHLDEDKRNALFRIVTDI 341
           +K+++  + L+   L++       +          +LLD+I+A LDE   + L + ++ +
Sbjct: 352 KKLLITALRLSQLPLLAGMEANNAVSIGNDEGLPLVLLDDITAELDERALSILLKSLSQL 411

Query: 342 GSQIFMTGTDKSVFDSLN---ETAKFMRISNHQALC 374
             Q+F+T  D  +   +      AK   +   + + 
Sbjct: 412 SCQVFITSLDDDIMTKIQPYWPEAKLFHMKQGKVIQ 447


>gi|153831484|ref|ZP_01984151.1| recF protein [Vibrio cholerae 623-39]
 gi|148873035|gb|EDL71170.1| recF protein [Vibrio cholerae 623-39]
          Length = 185

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 2/186 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  +   A     +G NG GKT++LEAI  L  GR F+ +    +
Sbjct: 1   MPLSRLVIQQFRNIKACDIRLSAGFNFLIGPNGSGKTSVLEAIYLLGHGRSFKSSLTGRI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            +      F      E         + +     R     ++I     + + +L + L + 
Sbjct: 61  IQNECSELFVHGRICEHSLSSDQFELPVGINKQRDGSTEVKIGGQTGQKLAQLAQILPLQ 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            + P    + +    +RR F+D  VF  +P        F+RL + RN LL          
Sbjct: 121 LIHPEGFELLTDGPKQRRAFIDWGVFHTEPAFFDAWGRFKRLSKQRNALLKSAQSYRE-L 179

Query: 184 SSIEAQ 189
           S  + +
Sbjct: 180 SYWDQE 185


>gi|332294864|ref|YP_004436787.1| DNA replication and repair protein recF [Thermodesulfobium
           narugense DSM 14796]
 gi|332177967|gb|AEE13656.1| DNA replication and repair protein recF [Thermodesulfobium
           narugense DSM 14796]
          Length = 323

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 150/351 (42%), Gaps = 33/351 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I  FRN+         +  + +G+N  GKTN+LEAI     G+        ++ +   
Sbjct: 3   LEIHHFRNFEHNTFNLSKK-NLIIGENASGKTNLLEAIYLTLRGKTKNNIPNQNLIQFSR 61

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129
            S     A +        I I +    +   + L+IND  +    +L ++ ++ ++    
Sbjct: 62  ES-----ALIRNTVYGKRIEIMM----NNKNKILKINDKKLNSSIKLWQYFKVFYINLFD 112

Query: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             + S     +R+FLD ++  I+P   +   D + L   +N +L     D     S + +
Sbjct: 113 SLLLSQEPKNKRKFLDEIIININPEKIKLYKDLKILNTQKNYVLKN-KTDKELIKSYDIK 171

Query: 190 MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           + +L  +I+  R E++N +     + +++E+           +  KF +S  +      K
Sbjct: 172 LTQLSQEISNLREEVLNNVILNTKKLLKEES-----------IQIKFYKSLES------K 214

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
           ++ +   +++ ++R +I P R +  V    + I  +  STGE K   + + LA   +   
Sbjct: 215 EIKNKEIIEAKTKRNIINPSRDNFSVKI--RNIDSSFLSTGEIKKFSLALHLAKISIFKE 272

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
                 + L DEI++ LD+   + L + +  I   + +T T +   ++ ++
Sbjct: 273 H---NCVSLFDEINSFLDKANLDILLKWLQKIDGYVIVTSTSELDLENFDK 320


>gi|148651821|ref|YP_001278914.1| DNA replication and repair protein RecF [Psychrobacter sp. PRwf-1]
 gi|148570905|gb|ABQ92964.1| DNA replication and repair protein RecF [Psychrobacter sp. PRwf-1]
          Length = 459

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 84/462 (18%), Positives = 164/462 (35%), Gaps = 105/462 (22%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I + RN  S+ +    Q  +FVG NG GKT++LE++  LS G+ FR         
Sbjct: 2   LTQLSIHQLRNLHSVNIKVG-QCNVFVGANGSGKTSLLESLYLLSRGKSFRHHQPKRYIS 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +           G       S+ ++   D S   L+++   + V   L K L    + 
Sbjct: 61  HHAAHATVHAKFANGS------SMAIQKAQDAST-ILRLDQQTVYVQSALAKQLPTLLID 113

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182
           PS   +    S  RR+ LD + F + P    + + ++RL++ RN +L +  +        
Sbjct: 114 PSSMDVLEIGSSSRRQLLDWITFHVKPGFHAQWLAYQRLLKQRNTILRQSGYLSDYQRQE 173

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---ENFPHIKLSLTGFLDGKFDQS 239
            ++ +  +A     I   R E       L  + +++   +  P I+L  +   +      
Sbjct: 174 LAAWDKGLANHAALITHYRHEAFEEWQPLFNQLIEQLLPDYAPFIQLRFSAGYNTDL-PL 232

Query: 240 FCALKEEYAKKLFDGRKM--------------DSMSRRTLI----------------GPH 269
              L++  A+    G                 D+ +R+T+                    
Sbjct: 233 DELLQQRLAQDFQTGYTRVGCHRADIQVLWLEDAQARQTVQQAAETSGMAQTAAHSNIHS 292

Query: 270 RSDLIV---------DYCDKAITIAHG-------------STGEQKVVLVGIFLAHARLI 307
            +D+ +         D  +     A+              S GE+K+++  + L+   L+
Sbjct: 293 HADIKLSTDLVDNIEDMNNWEDETAYALTGNVREQAANVLSRGEKKLLITALRLSQLPLL 352

Query: 308 SNTTGFA----------------------------------PILLLDEISAHLDEDKRNA 333
           S                                        P++LLD+I+A LDE   + 
Sbjct: 353 STKLSTKLSLTESAAVTDTVIGSNSASEDQPYPSALSDAILPVVLLDDITAELDERALSI 412

Query: 334 LFRIVTDIGSQIFMTGTDKSVFDSLNE---TAKFMRISNHQA 372
           L + ++++  QIF+T  D  +   + +    A+   +     
Sbjct: 413 LLKTLSELSCQIFITSLDGDIMPQIKQYWPQAQRFHVKQGHI 454


>gi|213865136|ref|ZP_03387255.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 156

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 4/160 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R    +F     R++G E    I +  + + D  VR   I+      + EL   + +  
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
           + P    + +G    RR FLD   F  +        + +R
Sbjct: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKR 156


>gi|87300931|ref|ZP_01083773.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. WH 5701]
 gi|87284802|gb|EAQ76754.1| putative DNA repair and genetic recombination protein RecF
           [Synechococcus sp. WH 5701]
          Length = 342

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 142/344 (41%), Gaps = 20/344 (5%)

Query: 47  ISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGME--------GLADISIKLETRDDR 98
           +  L   R  R +   D+ R G           +G           L    ++LE R   
Sbjct: 1   MELLGSLRSHRSSHDRDLIRHGQSRALVRGWCGDGHSPGAGAPAPVLDQQELELEVRRQG 60

Query: 99  SVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
             +  +    + R +D L   LR          +  G    RR++LDR+V  ++P +   
Sbjct: 61  GRQARRNGRSLERQLD-LVGPLRCVGFSALDLELVRGEPALRRQWLDRVVLQLEPVYGEL 119

Query: 159 MIDFERLMRGRNRLLTEGYFDS-----SWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
           +  + RL+R R++LL  G         S   + + Q+A +G +++  R   +  L  L  
Sbjct: 120 LARYGRLLRQRSQLLRRGLSQGEQQLHSLLDAFDLQIALIGTRLHRRRRRALARLQPLAA 179

Query: 214 EYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
            + ++ +    +L L      + +  ++    +E   ++L   R  +       +GPHR 
Sbjct: 180 AWQERLSGGREQLELRYQAGSQLEGEEAEAPWREALLEQLRRQRPEERRLGACQVGPHRD 239

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           ++ +   ++      GS G+Q+ +++ + LA   L+    G  P+LLLD++ A LD  ++
Sbjct: 240 EVAMLLGEEP-ARRFGSAGQQRTLVLALKLAELELVQQLWGEPPLLLLDDVLAELDPKRQ 298

Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSL--NETAKFMRISNHQAL 373
             L  +V   G Q  ++ T  + F +      ++ +RI   + +
Sbjct: 299 ELLLEVV-GTGHQCLVSATHLTSFSTAWQGGDSQVVRICRGELM 341


>gi|291532568|emb|CBL05681.1| hypothetical protein MHY_05980 [Megamonas hypermegale ART12/1]
          Length = 194

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 5/192 (2%)

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ--- 238
              + + Q+A+    I   R+  I  LS L  +   + +     L++   +    ++   
Sbjct: 1   MLDTWDEQIAKTAAFIVEKRLRSIEKLSKLAQKIHYEISQKMEILNIRYNIHNYKNEALN 60

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           SF  L   Y + L   R  D     T IGPHR D+     D ++  + GS G+Q+  ++ 
Sbjct: 61  SFDDLFNFYIQALSKYRDNDIYRGSTSIGPHRDDIDFFINDISLK-SFGSQGQQRSSVLS 119

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + LA    +   TG  PILLLD++ + LD  +R+ L  ++ D   Q  +T TD ++F+S 
Sbjct: 120 LKLAELEFLKLETGEYPILLLDDVMSELDTRRRDNLLSLLQDNNVQTLITATDINLFNSH 179

Query: 359 NETAKFMRISNH 370
            +  KF ++   
Sbjct: 180 PKN-KFFKVEKG 190


>gi|226326918|ref|ZP_03802436.1| hypothetical protein PROPEN_00778 [Proteus penneri ATCC 35198]
 gi|225204755|gb|EEG87109.1| hypothetical protein PROPEN_00778 [Proteus penneri ATCC 35198]
          Length = 164

 Score =  156 bits (394), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 1/163 (0%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I  FRN     L         VG NG GKT+ILEAI  L  GR FR +    V
Sbjct: 1   MILSRLLIRHFRNIEQADLPLADGFNFLVGPNGSGKTSILEAIYTLGHGRAFRSSQANRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    +F     R+ G+   +       ++D      ++I+      + EL K L +  
Sbjct: 61  IQHDENAFI-LHGRLSGLNEESRGYAIGLSKDREGNSTVRIDGSDGHKIAELAKLLPMQL 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           + P    + +G    RR F+D   F  +PR  R M+ F+   +
Sbjct: 120 ITPEGFTLLNGGPKYRRAFIDWGCFHNEPRFFRCMVGFKTCFK 162


>gi|218458186|ref|ZP_03498277.1| recombination protein F [Rhizobium etli Kim 5]
          Length = 152

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 64/146 (43%), Positives = 94/146 (64%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYA++ L  D +H +  G+NG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVCLSRLKLTDFRNYAAVSLALDGRHAVLTGNNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +ET ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGTAGGFSIFAALDGMEGEVEIGTGVETGEETTTRRLRINGTAAKTADELTDHL 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDR 146
           R+ WL P   R      +   RFLDR
Sbjct: 121 RLLWLTPGDGRALYRRLVRPPRFLDR 146


>gi|229100793|ref|ZP_04231612.1| DNA replication and repair protein recF [Bacillus cereus Rock3-28]
 gi|228682622|gb|EEL36680.1| DNA replication and repair protein recF [Bacillus cereus Rock3-28]
          Length = 183

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 5/180 (2%)

Query: 198 NIARVEMINALSSLIMEYVQKEN--FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
              R + ++ L        +  +     +++     +D         +KE Y +     +
Sbjct: 1   MQKRFDFLHLLQEWAAPIHRGISRGLEELEIIYKPSVDVSESMDLSKIKEVYYESFQSVK 60

Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
           + +     TLIGPHR DL      K + +  GS G+Q+   + + LA   LI +     P
Sbjct: 61  QREIFRGTTLIGPHRDDLQFFVNSKNVQV-FGSQGQQRTTALSLKLAEIELIYSEVKEYP 119

Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQALC 374
           ILLLD++ + LD+ +++ L   +     Q F+T T     +    + AK + ++N    C
Sbjct: 120 ILLLDDVLSELDDYRQSHLLNTIQG-RVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDC 178


>gi|1790873|gb|AAB41128.1| RecF [Clostridium acetobutylicum ATCC 824]
          Length = 205

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 8/207 (3%)

Query: 168 GRNRLLTEGYF-DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            RN +L    F ++   S  + Q+++ G  +  +R++ +N L+               ++
Sbjct: 2   QRNIMLRNKKFLNNDMISVYDEQLSKFGSSLIESRIKYLNKLNEKGKIIHSDITKGKEEI 61

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
             T     K  ++   + EE      D  K D     T +GPHR D  +   +     + 
Sbjct: 62  EFTYLTHVKGREN---ISEELFSLFKDSYKRDVEKGNTSVGPHRDDFSIKI-NGIDARSF 117

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           GS G+Q+  ++ I  A  ++I   +   P+LLLD++ + LDE ++  +   +   G Q  
Sbjct: 118 GSQGQQRTSVLTIKFASIQIIKEISSETPVLLLDDVLSELDESRQEYILNSLE--GIQTL 175

Query: 347 MTGTDKSVFDS-LNETAKFMRISNHQA 372
           +T T     +  L       RI N + 
Sbjct: 176 ITCTGIGDIEKYLKNDFNVFRIDNGRI 202


>gi|213857449|ref|ZP_03384420.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 188

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 81/193 (41%), Gaps = 10/193 (5%)

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                 + ++  L  +I+  R E  +A++  + +  Q +  P   L+ +     + +   
Sbjct: 3   EQLRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEKET-- 59

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + 
Sbjct: 60  -----DYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALR 113

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLN 359
           LA    ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +
Sbjct: 114 LAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSD 173

Query: 360 ETAKFMRISNHQA 372
           E +K   +   + 
Sbjct: 174 ENSKMFTVEKGKI 186


>gi|89512208|gb|ABD74000.1| recombination protein F [Mycobacterium avium subsp.
           paratuberculosis]
          Length = 155

 Score =  145 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 4/159 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L + +FR++A   L      T+F+G NG GKTN+LEA+ + S     R  + A +
Sbjct: 1   VYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALRYSSTLGSHRVGTDAPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G+     +   V       + ++ LE    R+ +  ++N   +R   E+   LR   
Sbjct: 61  IRAGADRAVVSTIVVNDG---RECAVDLEIAAGRANKA-RLNRSPVRSTREVLGVLRAVL 116

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
             P    +  G   ERRR+LD +     P       D++
Sbjct: 117 FAPEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYD 155


>gi|23014791|ref|ZP_00054591.1| COG1195: Recombinational DNA repair ATPase (RecF pathway)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 174

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 5/150 (3%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           + +R  ++ L++++FR Y +LRL  DA+  +  G NG GKTNILEA+SFL PGRG RRA 
Sbjct: 11  LASRPAVRRLSLADFRCYGTLRLETDARPVVLTGPNGAGKTNILEALSFLVPGRGLRRAG 70

Query: 61  YADVTRIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
             D+TR G  + S ++  A ++G  G  +I    E   +R  R ++I+    +  D L  
Sbjct: 71  AGDITRHGLPAGSPWAVAASLDGPAGRVEIGTGREAGHER--RSVRIDGKPAKPGD-LAG 127

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
            +   WL P+MDR+F   +  RRRFLDR+ 
Sbjct: 128 LVSALWLTPAMDRLFIEGASGRRRFLDRLF 157


>gi|309799252|ref|ZP_07693500.1| DNA replication and repair protein RecF [Streptococcus infantis
           SK1302]
 gi|308117097|gb|EFO54525.1| DNA replication and repair protein RecF [Streptococcus infantis
           SK1302]
          Length = 164

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 4/161 (2%)

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
            E     +    +LS+       F      L E +   L   R  D   + T +GPHR D
Sbjct: 6   REKHFDISNQLEELSICYQPSVNF-TDKEHLSESFYTALQKSRSRDLFKKNTGVGPHRDD 64

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           +I       +  + GS G+ + +++ I LA   L+ + T  +PILLLD++ + LD  ++ 
Sbjct: 65  MIFLING--MDASFGSQGQHRSLVLSIKLAEIELMESITKESPILLLDDVMSELDNTRQL 122

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
            L   ++    Q F+T T      +L +T     ++N Q +
Sbjct: 123 KLLETISQ-NIQTFITTTSLEHLQNLPDTLSLFTVNNGQIV 162


>gi|218682258|ref|ZP_03529859.1| recombination protein F [Rhizobium etli CIAT 894]
          Length = 123

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/123 (46%), Positives = 83/123 (67%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +++ +  L +++FRNYAS  L  D +H +  GDNG GKTN++EA+S LSPGRG RRA+
Sbjct: 1   MPHKVSLSRLKLTDFRNYASAALTLDGRHAVLTGDNGAGKTNLMEAVSLLSPGRGLRRAA 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           Y D+TR+G+   FS FA ++GMEG  +I   +ET ++ + R L+IN    +  DEL  HL
Sbjct: 61  YGDITRVGAAGGFSIFAALDGMEGDVEIGTGIETGEESTARRLRINGTPAKTADELTDHL 120

Query: 121 RIS 123
           R+ 
Sbjct: 121 RLL 123


>gi|317472421|ref|ZP_07931746.1| DNA replication and repair protein RecF [Anaerostipes sp.
           3_2_56FAA]
 gi|316900141|gb|EFV22130.1| DNA replication and repair protein RecF [Anaerostipes sp.
           3_2_56FAA]
          Length = 130

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 4/130 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +  +RNY  L + F +   I  GDN  GKTNILEA+   +  +  R +   ++
Sbjct: 1   MYIQSLELKNYRNYDRLIIEFSSGTNILYGDNAQGKTNILEAVYLGATTKSHRGSKDKEI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G      +  R+  M+      I +  +  R+ +   I+ + I+   +L   + + +
Sbjct: 61  IRFGENE---SHIRIHLMKQDIGHQIDMHLKKSRT-KGAAIDRIPIKRSSDLLGFVPVIF 116

Query: 125 LVPSMDRIFS 134
             P    I  
Sbjct: 117 FSPEDLSIIK 126


>gi|327398177|ref|YP_004339046.1| SMC domain-containing protein [Hippea maritima DSM 10411]
 gi|327180806|gb|AEA32987.1| SMC domain protein [Hippea maritima DSM 10411]
          Length = 326

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 150/352 (42%), Gaps = 44/352 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + I+ FRN+  L + FD +  I  G NG GKTN++EA+     G  F+  +   V
Sbjct: 1   MFIKNIIITNFRNFNLLEVKFD-KINIIKGKNGTGKTNLIEAVYLTLNGHPFKN-NLK-V 57

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +          A ++           +  + D   + ++++  ++RVVD       +++
Sbjct: 58  LKKELEKPTILNAIIDKH--------TIFIKIDDDKKYIKLDSKLVRVVDLKKTFACLNY 109

Query: 125 LVPSM------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            + S       D +FS         +DR + + D     ++I++++  R +  L +    
Sbjct: 110 SINSFISFRSKDYLFS--------LVDRGISSYDHSIIDKLIEYKKTNRLKKELFSSPKP 161

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D +  + +  ++  +  +I++ R   I  L + +           ++L       GK++ 
Sbjct: 162 DYNMLNFLNDKIKSIVDEISLKRDGFILKLKNDVENCFCSFFGKKLELIYEI---GKYND 218

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           S                + +    R L G  +  L +   +K +   + S GE+K+ L+ 
Sbjct: 219 SV--------------FEKEKQKNRVLFGFKKDSLKIILNNKDL-FLYSSVGEKKISLLC 263

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           I L+ A++  N++G  PILL+D++   LD   +   F I+  + +Q  +T  
Sbjct: 264 IVLSIAKMY-NSSGVEPILLIDDLEGDLDPQVQKRAFDIIKTLPNQSIITTL 314


>gi|37289461|gb|AAQ90928.1| DNA replication and repair protein [Bacillus sp. AH 721]
          Length = 156

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            F R++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DFGRIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R E ++ L        +  +    +L
Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289397|gb|AAQ90896.1| DNA replication and repair protein [Bacillus sp. AH 1270]
 gi|37289399|gb|AAQ90897.1| DNA replication and repair protein [Bacillus sp. AH 1271]
          Length = 156

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            F +++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R E ++ L        +  +    +L
Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289337|gb|AAQ90866.1| DNA replication and repair protein [Bacillus cereus ATCC 14579]
 gi|37289341|gb|AAQ90868.1| DNA replication and repair protein [Bacillus cereus ATCC 4342]
 gi|37289343|gb|AAQ90869.1| DNA replication and repair protein [Bacillus thuringiensis]
 gi|37289457|gb|AAQ90926.1| DNA replication and repair protein [Bacillus sp. AH 716]
 gi|37289459|gb|AAQ90927.1| DNA replication and repair protein [Bacillus sp. AH 718]
 gi|37289463|gb|AAQ90929.1| DNA replication and repair protein [Bacillus sp. AH 726]
 gi|37289469|gb|AAQ90932.1| DNA replication and repair protein [Bacillus sp. AH 811]
 gi|37289473|gb|AAQ90934.1| DNA replication and repair protein [Bacillus sp. AH 889]
 gi|37289481|gb|AAQ90938.1| DNA replication and repair protein [Bacillus sp. AH 1293]
 gi|37289483|gb|AAQ90939.1| DNA replication and repair protein [Bacillus sp. AH 1294]
 gi|57233287|gb|AAW48230.1| DNA replication and repair protein [Bacillus cereus]
 gi|156073530|gb|ABU46123.1| replication and repair protein [Bacillus cereus]
 gi|156073540|gb|ABU46128.1| replication and repair protein [Bacillus cereus]
          Length = 156

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            F +++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R E ++ L        +  +    +L
Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289331|gb|AAQ90863.1| DNA replication and repair protein [Bacillus sp. AH 1127]
 gi|37289335|gb|AAQ90865.1| DNA replication and repair protein [Bacillus sp. AH 1135]
 gi|37289339|gb|AAQ90867.1| DNA replication and repair protein [Bacillus cereus]
 gi|37289345|gb|AAQ90870.1| DNA replication and repair protein [Bacillus sp. AH 728]
 gi|37289347|gb|AAQ90871.1| DNA replication and repair protein [Bacillus cereus ATCC 10987]
 gi|37289351|gb|AAQ90873.1| DNA replication and repair protein [Bacillus sp. AH 812]
 gi|37289357|gb|AAQ90876.1| DNA replication and repair protein [Bacillus sp. AH 817]
 gi|37289361|gb|AAQ90878.1| DNA replication and repair protein [Bacillus sp. AH 819]
 gi|37289365|gb|AAQ90880.1| DNA replication and repair protein [Bacillus sp. AH 823]
 gi|37289367|gb|AAQ90881.1| DNA replication and repair protein [Bacillus sp. AH 824]
 gi|37289369|gb|AAQ90882.1| DNA replication and repair protein [Bacillus sp. AH 825]
 gi|37289371|gb|AAQ90883.1| DNA replication and repair protein [Bacillus sp. AH 826]
 gi|37289373|gb|AAQ90884.1| DNA replication and repair protein [Bacillus sp. AH 827]
 gi|37289375|gb|AAQ90885.1| DNA replication and repair protein [Bacillus sp. AH 828]
 gi|37289377|gb|AAQ90886.1| DNA replication and repair protein [Bacillus sp. AH 829]
 gi|37289379|gb|AAQ90887.1| DNA replication and repair protein [Bacillus sp. AH 831]
 gi|37289381|gb|AAQ90888.1| DNA replication and repair protein [Bacillus thuringiensis]
 gi|37289387|gb|AAQ90891.1| DNA replication and repair protein [Bacillus sp. AH 1123]
 gi|37289405|gb|AAQ90900.1| DNA replication and repair protein [Bacillus cereus]
 gi|37289407|gb|AAQ90901.1| DNA replication and repair protein [Bacillus sp. AH 267]
 gi|37289471|gb|AAQ90933.1| DNA replication and repair protein [Bacillus sp. AH 830]
 gi|57233271|gb|AAW48222.1| DNA replication and repair protein [Bacillus cereus NC7401]
 gi|57233273|gb|AAW48223.1| DNA replication and repair protein [Bacillus cereus]
 gi|57233275|gb|AAW48224.1| DNA replication and repair protein [Bacillus cereus]
 gi|57233277|gb|AAW48225.1| DNA replication and repair protein [Bacillus cereus]
 gi|57233279|gb|AAW48226.1| DNA replication and repair protein [Bacillus cereus]
 gi|57233281|gb|AAW48227.1| DNA replication and repair protein [Bacillus cereus]
 gi|57233283|gb|AAW48228.1| DNA replication and repair protein [Bacillus cereus]
 gi|57233285|gb|AAW48229.1| DNA replication and repair protein [Bacillus cereus]
 gi|156073500|gb|ABU46108.1| replication and repair protein [Bacillus cereus]
 gi|156073502|gb|ABU46109.1| replication and repair protein [Bacillus cereus]
 gi|156073504|gb|ABU46110.1| replication and repair protein [Bacillus cereus]
 gi|156073506|gb|ABU46111.1| replication and repair protein [Bacillus cereus]
 gi|156073508|gb|ABU46112.1| replication and repair protein [Bacillus cereus]
 gi|156073510|gb|ABU46113.1| replication and repair protein [Bacillus thuringiensis]
 gi|156073514|gb|ABU46115.1| replication and repair protein [Bacillus thuringiensis]
 gi|156073516|gb|ABU46116.1| replication and repair protein [Bacillus thuringiensis]
 gi|156073518|gb|ABU46117.1| replication and repair protein [Bacillus thuringiensis]
 gi|156073522|gb|ABU46119.1| replication and repair protein [Bacillus thuringiensis]
 gi|156073524|gb|ABU46120.1| replication and repair protein [Bacillus cereus]
 gi|156073532|gb|ABU46124.1| replication and repair protein [Bacillus cereus]
 gi|156073534|gb|ABU46125.1| replication and repair protein [Bacillus cereus]
 gi|156073536|gb|ABU46126.1| replication and repair protein [Bacillus cereus]
 gi|156073538|gb|ABU46127.1| replication and repair protein [Bacillus cereus]
          Length = 156

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            F +++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R E ++ L        +  +    +L
Sbjct: 121 IEHGTKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289385|gb|AAQ90890.1| DNA replication and repair protein [Bacillus thuringiensis]
          Length = 156

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 4/155 (2%)

Query: 76  FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSG 135
           F +++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  G
Sbjct: 2   FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKG 61

Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQMA 191
               RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+ 
Sbjct: 62  SPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQLI 121

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           E G KI   R E ++ L        +  +    +L
Sbjct: 122 EHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289389|gb|AAQ90892.1| DNA replication and repair protein [Bacillus sp. AH 1129]
          Length = 156

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            F +++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DFGQIKGKLQKRNNSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R E ++ L        +  +    +L
Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289353|gb|AAQ90874.1| DNA replication and repair protein [Bacillus sp. AH 813]
 gi|37289355|gb|AAQ90875.1| DNA replication and repair protein [Bacillus sp. AH 816]
 gi|37289359|gb|AAQ90877.1| DNA replication and repair protein [Bacillus sp. AH 818]
 gi|37289363|gb|AAQ90879.1| DNA replication and repair protein [Bacillus sp. AH 820]
 gi|37289383|gb|AAQ90889.1| DNA replication and repair protein [Bacillus anthracis]
 gi|37289467|gb|AAQ90931.1| DNA replication and repair protein [Bacillus anthracis]
 gi|37289475|gb|AAQ90935.1| DNA replication and repair protein [Bacillus anthracis]
 gi|37289477|gb|AAQ90936.1| DNA replication and repair protein [Bacillus anthracis]
 gi|37289479|gb|AAQ90937.1| DNA replication and repair protein [Bacillus anthracis]
 gi|156073494|gb|ABU46105.1| replication and repair protein [Bacillus anthracis]
 gi|156073496|gb|ABU46106.1| replication and repair protein [Bacillus anthracis]
 gi|156073498|gb|ABU46107.1| replication and repair protein [Bacillus anthracis]
 gi|156073512|gb|ABU46114.1| replication and repair protein [Bacillus thuringiensis]
 gi|156073520|gb|ABU46118.1| replication and repair protein [Bacillus thuringiensis]
 gi|156073526|gb|ABU46121.1| replication and repair protein [Bacillus cereus]
 gi|156073528|gb|ABU46122.1| replication and repair protein [Bacillus cereus]
          Length = 156

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            F +++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R E ++ L        +  +    +L
Sbjct: 121 IEHGTKILRKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289333|gb|AAQ90864.1| DNA replication and repair protein [Bacillus sp. AH 1131]
          Length = 156

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            F +++G       S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DFGQIKGKLQKRSSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R E ++ L        +  +    +L
Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289415|gb|AAQ90905.1| DNA replication and repair protein [Bacillus sp. AH 519]
 gi|37289417|gb|AAQ90906.1| DNA replication and repair protein [Bacillus sp. AH 536]
 gi|37289419|gb|AAQ90907.1| DNA replication and repair protein [Bacillus sp. AH 542]
 gi|37289425|gb|AAQ90910.1| DNA replication and repair protein [Bacillus sp. AH 553]
 gi|37289427|gb|AAQ90911.1| DNA replication and repair protein [Bacillus sp. AH 572]
 gi|37289465|gb|AAQ90930.1| DNA replication and repair protein [Bacillus sp. AH 727]
          Length = 156

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            F +++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R E ++ L        +  +    +L
Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289393|gb|AAQ90894.1| DNA replication and repair protein [Bacillus weihenstephanensis]
 gi|37289409|gb|AAQ90902.1| DNA replication and repair protein [Bacillus sp. AH 403]
 gi|37289437|gb|AAQ90916.1| DNA replication and repair protein [Bacillus sp. AH 641]
 gi|37289441|gb|AAQ90918.1| DNA replication and repair protein [Bacillus sp. AH 650]
 gi|37289455|gb|AAQ90925.1| DNA replication and repair protein [Bacillus sp. AH 685]
          Length = 156

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            +  ++G     + SI LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DYGNIKGRLQRRNSSISLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R E ++ L        +  +    +L
Sbjct: 121 IEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289391|gb|AAQ90893.1| DNA replication and repair protein [Bacillus sp. AH 1132]
          Length = 156

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            F +++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE----GYFDSSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN L+ +       + +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNSLVKKMPGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R E ++ L        +  +    +L
Sbjct: 121 IEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289421|gb|AAQ90908.1| DNA replication and repair protein [Bacillus sp. AH 546]
          Length = 156

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 4/155 (2%)

Query: 76  FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSG 135
           F +++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  G
Sbjct: 2   FGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKG 61

Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQMA 191
               RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+ 
Sbjct: 62  SPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQLI 121

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           E G KI   R E ++ L        +  +    +L
Sbjct: 122 EHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289411|gb|AAQ90903.1| DNA replication and repair protein [Bacillus sp. AH 407]
 gi|37289423|gb|AAQ90909.1| DNA replication and repair protein [Bacillus sp. AH 547]
 gi|37289435|gb|AAQ90915.1| DNA replication and repair protein [Bacillus sp. AH 632]
 gi|37289439|gb|AAQ90917.1| DNA replication and repair protein [Bacillus sp. AH 645]
 gi|37289443|gb|AAQ90919.1| DNA replication and repair protein [Bacillus sp. AH 663]
 gi|37289445|gb|AAQ90920.1| DNA replication and repair protein [Bacillus sp. AH 664]
 gi|37289447|gb|AAQ90921.1| DNA replication and repair protein [Bacillus sp. AH 675]
 gi|37289449|gb|AAQ90922.1| DNA replication and repair protein [Bacillus sp. AH 676]
 gi|37289451|gb|AAQ90923.1| DNA replication and repair protein [Bacillus sp. AH 678]
 gi|37289453|gb|AAQ90924.1| DNA replication and repair protein [Bacillus sp. AH 681]
          Length = 156

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            +  ++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DYGNIKGRLQRRNSSVSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R E ++ L        +  +    +L
Sbjct: 121 IEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289429|gb|AAQ90912.1| DNA replication and repair protein [Bacillus sp. AH 607]
          Length = 156

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            F +++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R + ++ L        +  +    +L
Sbjct: 121 IEHGAKILQKRFDFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289401|gb|AAQ90898.1| DNA replication and repair protein [Bacillus sp. AH 1272]
 gi|37289403|gb|AAQ90899.1| DNA replication and repair protein [Bacillus sp. AH 1273]
          Length = 156

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            + +++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DYGQIKGRLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R E ++ L        +  +    +L
Sbjct: 121 IEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289395|gb|AAQ90895.1| DNA replication and repair protein [Bacillus sp. AH 1247]
          Length = 156

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            F +++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R + ++ L        +  +    +L
Sbjct: 121 IEHGAKILQKRFDFLHLLQEWAAPIHRGISRGLEEL 156


>gi|153831514|ref|ZP_01984181.1| DNA replication and repair protein RecF [Vibrio cholerae 623-39]
 gi|148873003|gb|EDL71138.1| DNA replication and repair protein RecF [Vibrio cholerae 623-39]
          Length = 154

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 9/157 (5%)

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
            + +   P   + L  +   + DQ        Y   L    + D     T  GP+++DL 
Sbjct: 1   QLCRTFLPEFDIDLKYYRGWEKDQP-------YQSILEKNFERDQQLGYTFSGPNKADLR 53

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           +      +     S G+ K+++  + +A  + ++  TG   I L+D+ ++ LD  +R  L
Sbjct: 54  IKVNATPVEDVL-SRGQLKLMVCALRVAQGQHLTELTGKQCIYLIDDFASELDSLRRQRL 112

Query: 335 FRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRISNH 370
              +   G+Q+F++  T+  V D L+E++K   +++ 
Sbjct: 113 ADSLKGTGAQVFVSSITESQVADMLDESSKTFHVAHG 149


>gi|37289413|gb|AAQ90904.1| DNA replication and repair protein [Bacillus sp. AH 408]
 gi|37289431|gb|AAQ90913.1| DNA replication and repair protein [Bacillus sp. AH 614]
 gi|37289433|gb|AAQ90914.1| DNA replication and repair protein [Bacillus sp. AH 627]
          Length = 156

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            +  ++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DYGNIKGRLQRRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R E ++ L        +  +    +L
Sbjct: 121 IEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEEL 156


>gi|37289349|gb|AAQ90872.1| DNA replication and repair protein [Bacillus sp. AH 810]
          Length = 156

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
            F +++G     + S+ LE    +  +  ++N +  + + +    + +    P    +  
Sbjct: 1   DFGQIKGKLQKRNSSLSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVK 60

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQM 190
           G    RRRFLD  +  I P +   +  +++++  RN LL +   +     +       Q+
Sbjct: 61  GSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLDVFTLQL 120

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            E G KI   R   ++ L        +  +    +L
Sbjct: 121 IEHGTKILRKRFGFLHLLQEWAAPIHRGISRGLEEL 156


>gi|226326917|ref|ZP_03802435.1| hypothetical protein PROPEN_00777 [Proteus penneri ATCC 35198]
 gi|225204754|gb|EEG87108.1| hypothetical protein PROPEN_00777 [Proteus penneri ATCC 35198]
          Length = 185

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 76/188 (40%), Gaps = 10/188 (5%)

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + ++  L  +I+  R +    ++  I E   +   P   L ++       +        
Sbjct: 3   WDKELILLTQQISEWRAQYTEDIAKDIEETC-RLFLPEFSLKVSFQRGWDKET------- 54

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           +Y + L    + D M   T +G H++DL +      +     S G+ K+++  + LA   
Sbjct: 55  DYGELLARQFERDKMLAYTSLGAHKADLRIRANGTPVEDML-SRGQLKLLMCALRLAQGE 113

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKF 364
             +   G   + LLD+ ++ LD  +R  L   +    +Q+F++  T   V D L+  ++ 
Sbjct: 114 YFTRKNGQRCLYLLDDFASELDASRRQLLAERLKSTQAQVFVSAITQGQVKDMLDVNSRL 173

Query: 365 MRISNHQA 372
             +   + 
Sbjct: 174 FSVERGKI 181


>gi|291547607|emb|CBL20715.1| Recombinational DNA repair ATPase (RecF pathway) [Ruminococcus sp.
           SR1/5]
          Length = 157

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 17/154 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + ++ FRNY SL + FD    I  GDN  GKTNILEA+      +  + +   ++
Sbjct: 1   MYIESIRLNNFRNYESLEMNFDQGTNILYGDNAQGKTNILEAVYLAGTSKSHKGSKDREM 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLRIS 123
            R  +       + +  M    D+S K++    +   + + IN + IR   EL   + + 
Sbjct: 61  IRFENEE-----SHIRMMVKKGDLSYKIDMHLRKNKAKGVAINGLPIRKARELLGVVNLV 115

Query: 124 WLVPSMDRIFSGLSMER--------RRFLDRMVF 149
           +    + RI     M+R        R F+  MVF
Sbjct: 116 FF---LRRILILSRMDREREDVFWIRSFVSWMVF 146


>gi|302531359|ref|ZP_07283701.1| recombination protein F [Streptomyces sp. AA4]
 gi|302440254|gb|EFL12070.1| recombination protein F [Streptomyces sp. AA4]
          Length = 204

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 20/206 (9%)

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV---QKENFPHIKLSLTGFLDGKFD 237
           S     +  ++  G ++  AR+ +I  L+    +       ++ P  K++    L     
Sbjct: 2   STLDVWDDHLSVAGAQLLAARLNLIADLAPYTADAYMGVAPDSRP-AKIAYKSSLGEALP 60

Query: 238 QSF----------CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
            S+            L+E   K L D R+ +     +L+GPHR +L +    +A    + 
Sbjct: 61  PSYGVPGGERAEPEVLRELLLKALADTRRQELERGISLVGPHRDELEL-ILGEAPAKGYA 119

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE     + + L    L+    G  P+LLLD++ A LD  +R  L  +      Q+ +
Sbjct: 120 SHGESWSFALALRLGSYELLRAEAGE-PVLLLDDVFAELDRKRRARLAEVAAGAE-QVLI 177

Query: 348 T-GTDKSVFDSLNETAKFMRISNHQA 372
           T    + V   L        +++ + 
Sbjct: 178 TAAVAEDVPTEL--AGARFTVADGEV 201


>gi|218659035|ref|ZP_03514965.1| recombination protein F [Rhizobium etli IE4771]
          Length = 115

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/114 (52%), Positives = 83/114 (72%)

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
           M     +GPHR+DLIV + +KA+     STGEQK +LVG+ LAHARL+ N TG APILLL
Sbjct: 1   MRGARWMGPHRADLIVHHREKAMEAERCSTGEQKALLVGLVLAHARLVGNLTGHAPILLL 60

Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           DEI+AHLDE +R ALF ++  +G Q FMTGTD+++F +L + A+F  +++ + L
Sbjct: 61  DEIAAHLDEGRRAALFDLIDGLGGQAFMTGTDRTMFSALADRAQFFTVADGKVL 114


>gi|313828985|gb|EFS66699.1| recombination protein F domain protein [Propionibacterium acnes
           HL063PA2]
          Length = 226

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 18/207 (8%)

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE----NFPHIKLSLTGFLDGKF 236
           +     + ++A +G ++  AR++ ++A+  L     ++     +        T  L+G +
Sbjct: 16  ATMDIWDNELATIGAELLSARLDTLSAVMPLTSAAYREIAPVNDLTTASYKSTIDLEGLW 75

Query: 237 DQSFC----------ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                           L   +   L   R  + +   TL+GP R D+I+   +      +
Sbjct: 76  SPPQERESSTPIDRKELANRFLDTLAKRRADELIRGVTLVGPQRDDIILHIGEMPAK-GY 134

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE   + + + L   +L+ +  G  P+L+LD++ A LD  +R+ L   V     Q+ 
Sbjct: 135 ASHGESWSLALALRLGSFQLLRD-DGIEPVLVLDDVFAELDATRRDRLASSVVQAD-QVL 192

Query: 347 MTGTDKSVFDSLNETAKFMRISNHQAL 373
           +T    S    +    +   +   Q L
Sbjct: 193 VTAAVASDVPEIL-RGERFDVGGGQVL 218


>gi|229083319|ref|ZP_04215681.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44]
 gi|228699994|gb|EEL52617.1| DNA replication and repair protein recF [Bacillus cereus Rock3-44]
          Length = 125

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
           ++ +     TLIGPHR DL      K + +  GS G+Q+   + + LA   LI +     
Sbjct: 2   KQREIFRGTTLIGPHRDDLQFFVNGKNVQV-FGSQGQQRTTALSLKLAEIELIYSEVKEY 60

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQAL 373
           PILLLD++ + LD+ +++ L   +     Q F+T T     +    + AK + + +    
Sbjct: 61  PILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHETLKQAKTIHVKSGTVD 119

Query: 374 C 374
           C
Sbjct: 120 C 120


>gi|15835875|ref|NP_300399.1| hypothetical protein CPj0340 [Chlamydophila pneumoniae J138]
 gi|8978714|dbj|BAA98550.1| frame-shift with CPj0339 [Chlamydophila pneumoniae J138]
          Length = 214

 Score =  121 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 4/187 (2%)

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + Q+ + G  ++I R      LS L  E         + L     L    D S  A+ E
Sbjct: 27  WDEQLVKHGTYLSIQRFLCSQKLSDLSKELWSNNLKEQLALKFKSSLIKNSDISETAVAE 86

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E+ K+L      D     T +GPHR D ++      ++    S G++  +L  + LA   
Sbjct: 87  EFHKQLSISLPRDLEWGSTSVGPHREDFLLTMNQMPVS-QFSSEGQKHSLLAILRLAECL 145

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
            +  +   +P++ LD+I A LD ++   L      +G Q  +T T   +   L +T+  +
Sbjct: 146 YLKQSHHVSPLVCLDDIHAGLDNERVGQLLDPAPTLG-QTLITSTH--MHGELPKTSLVL 202

Query: 366 RISNHQA 372
            I N Q 
Sbjct: 203 SIENAQV 209


>gi|213026882|ref|ZP_03341329.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 134

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 2/133 (1%)

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              + +YA  L    + D M   T  GPH++D  +   D A      S G+ K+++  + 
Sbjct: 1   WEKETDYADVLERSFERDRMLTYTAHGPHKADFRIR-ADGAPVEDTLSRGQLKLLMCALR 59

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV-FDSLN 359
           LA    ++  +G   + L+D+ ++ LD+ +R  L   +    SQ+F++        D  +
Sbjct: 60  LAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISAEHVIDMSD 119

Query: 360 ETAKFMRISNHQA 372
           E +K   +   + 
Sbjct: 120 ENSKMFTVEKGKI 132


>gi|291532567|emb|CBL05680.1| hypothetical protein MHY_05970 [Megamonas hypermegale ART12/1]
          Length = 176

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 5/158 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L +  +RNY +L L   +   IF G N  GKTNI+EAI F S G   R  +  D+
Sbjct: 1   MKIDLLTLYNYRNYNNLNLKLSSNINIFTGFNAQGKTNIIEAIYFSSLGISHRTRTEGDL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G        A +       DI+  L+    ++ R     +  I    +L   L +  
Sbjct: 61  ILWGKDE-----ASINVKFSKRDINSILKIILKKNKRKELNFNGEIIKQKDLPGLLTMIL 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
             P    +  G  + RRRF+D  +  I   +   ++ +
Sbjct: 116 FSPEDLMLIKGSPLLRRRFIDIELSQISRIYYNELVQY 153


>gi|315170509|gb|EFU14526.1| recombination protein F domain protein [Enterococcus faecalis
           TX1342]
          Length = 126

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 3/121 (2%)

Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
           + RK +     T +GPHR DL+     + +   +GS G+Q+   + I LA   L+ + TG
Sbjct: 2   NNRKRELFKANTFLGPHRDDLLFIVNGQNV-QTYGSQGQQRTTALSIKLAEIDLMHSETG 60

Query: 313 FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKFMRISNHQ 371
             P+LLLD++ + LD +++  L   +     Q F+T T      D L        +   +
Sbjct: 61  EYPVLLLDDVMSELDNERQIHLLETIEGK-VQTFLTTTSLDHIKDKLTVEPDIFYVQQGK 119

Query: 372 A 372
            
Sbjct: 120 I 120


>gi|157060586|gb|ABV03299.1| RecF [Chlamydia trachomatis]
 gi|157060588|gb|ABV03300.1| RecF [Chlamydia trachomatis]
 gi|157060590|gb|ABV03301.1| RecF [Chlamydia trachomatis]
          Length = 121

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
             G N  GKTN+LEA+  LS GR FR +   D  R G+  FF     +E +    ++   
Sbjct: 2   IFGLNAQGKTNLLEALYILSLGRSFRTSRLTDAIRFGASHFF-----IEAVFSHKEVFHT 56

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           L  + D+  + +  +   I  + EL     +         I  G   ERRRFLD ++   
Sbjct: 57  LSIQVDKKGKKILFDGAPITKLSELVGLFPVILFSIKDIAIIEGSPSERRRFLDLLLAQA 116

Query: 152 DPRH 155
             ++
Sbjct: 117 SDKY 120


>gi|157060562|gb|ABV03287.1| RecF [Chlamydia trachomatis]
 gi|157060564|gb|ABV03288.1| RecF [Chlamydia trachomatis]
 gi|157060566|gb|ABV03289.1| RecF [Chlamydia trachomatis]
 gi|157060568|gb|ABV03290.1| RecF [Chlamydia trachomatis]
 gi|157060570|gb|ABV03291.1| RecF [Chlamydia trachomatis]
 gi|157060572|gb|ABV03292.1| RecF [Chlamydia trachomatis]
 gi|157060574|gb|ABV03293.1| RecF [Chlamydia trachomatis]
 gi|157060576|gb|ABV03294.1| RecF [Chlamydia trachomatis]
 gi|157060578|gb|ABV03295.1| RecF [Chlamydia trachomatis]
 gi|157060580|gb|ABV03296.1| RecF [Chlamydia trachomatis]
 gi|157060582|gb|ABV03297.1| RecF [Chlamydia trachomatis]
 gi|157060584|gb|ABV03298.1| RecF [Chlamydia trachomatis]
          Length = 122

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
             G N  GKTN+LEA+  LS GR FR +   D  R G+  FF     +E +    ++   
Sbjct: 2   IFGLNAQGKTNLLEALYILSLGRSFRTSRLTDAIRFGASHFF-----IEAVFSHKEVFHT 56

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           L  + D+  + +  +   I  + EL     +         I  G   ERRRFLD ++   
Sbjct: 57  LSIQVDKKGKKILFDGAPITKLSELVGLFPVILFSIKDIAIIEGSPSERRRFLDLLLAQA 116

Query: 152 DPRH 155
             ++
Sbjct: 117 SDKY 120


>gi|330721226|gb|EGG99329.1| DNA recombination and repair protein RecF [gamma proteobacterium
           IMCC2047]
          Length = 145

 Score =  116 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 4/144 (2%)

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
             ++  F Q + A     ++ L  G + D     T  GPHR+DL V Y  +       S 
Sbjct: 2   CGIEIDFYQGWRANT-SLSEVLNAGLESDLKRGFTQAGPHRADLRVRYLGQN-AADLLSR 59

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+QK+V+  + +A   L S +TG   I LLD+++A LD+  R  L ++++ +  Q+F+T 
Sbjct: 60  GQQKLVICALKIAQGYLFSKSTGRTCIYLLDDLAAELDQVFRERLCKLLSTLDCQLFITS 119

Query: 350 TDKSVFDSLNETA--KFMRISNHQ 371
            D+ +F     +   K   +   +
Sbjct: 120 VDEQLFSRSWPSMDVKVFHVKQGE 143


>gi|1710064|sp|P49997|RECF_AZOVI RecName: Full=DNA replication and repair protein recF
 gi|790976|emb|CAA60158.1| recF [Azotobacter vinelandii]
          Length = 364

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 8/169 (4%)

Query: 26  DAQHT-IFVGDNGVGKTNILEAISFLSPG--RGFRRASYADVTRIGSPSFFSTFARVEGM 82
            A+      G NG GK       S  S      FR    + V +   P+  + F +V   
Sbjct: 34  SARVNQYISGPNGSGKRPAYWRRSTCSAWQLSSFRSQRLSPVIQHEQPAC-TVFGQVLWN 92

Query: 83  EGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR 141
           +G   ++ +    R+      ++I+   +R   +L + L +  + P   R+  G    RR
Sbjct: 93  DGRVRNLGV---ARNRLGELQIRIDGQNVRSAAQLAESLPLQLINPDSFRLLEGAPKVRR 149

Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190
           +FLD  VF ++ R        +  +R RN  L  G  D    ++ + ++
Sbjct: 150 QFLDWGVFHVEQRFLPAWDRLQTALRQRNSWLRHGRIDPVSQAAWDREL 198



 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           + +A   L+        I L+D++ + LDE  R AL R++ ++  Q+F+T  D    
Sbjct: 266 LKIAQGHLVDRAR-RECIYLVDDLPSELDEQHRRALCRLLEELHCQVFITCVDLEAL 321


>gi|213021784|ref|ZP_03336231.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 106

 Score =  109 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/106 (31%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1   MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            R    +F     R++G E    I +  + + D  VR    +   I
Sbjct: 61  IRHEQEAF-VLHGRLQGEERETSIGLTKDKQGDSKVRIDGTDGHKI 105


>gi|225011183|ref|ZP_03701644.1| DNA replication and repair protein RecF [Flavobacteria bacterium
           MS024-3C]
 gi|225004693|gb|EEG42654.1| DNA replication and repair protein RecF [Flavobacteria bacterium
           MS024-3C]
          Length = 164

 Score =  109 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 10/151 (6%)

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
                Q  +  +  +++                      L      D   + T +G H+ 
Sbjct: 12  FQSQHQAISGGNESVTIDYSSGMDHAP--------LEDLLVQNLSKDRALQYTSVGIHKD 63

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           DL  +     I    GS G+QK  L+ + LA    I   +   PILLLD+I   LD  + 
Sbjct: 64  DLQFELEGHPIK-KFGSQGQQKSFLIALKLAQFHFIKEKSNTTPILLLDDIFDKLDAQRV 122

Query: 332 NALFRIVTDIG-SQIFMTGTDKSVFDSLNET 361
             L  +V D    QIF++ T     +++ +T
Sbjct: 123 AQLLGLVNDHAYGQIFISDTHADRTEAVLKT 153


>gi|309804865|ref|ZP_07698927.1| putative recombination protein F [Lactobacillus iners LactinV
           09V1-c]
 gi|309805908|ref|ZP_07699940.1| putative recombination protein F [Lactobacillus iners LactinV
           03V1-b]
 gi|308165804|gb|EFO68025.1| putative recombination protein F [Lactobacillus iners LactinV
           09V1-c]
 gi|308167684|gb|EFO69831.1| putative recombination protein F [Lactobacillus iners LactinV
           03V1-b]
          Length = 117

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 3/115 (2%)

Query: 259 SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
                TL+GPHR DL V + +K     + S G+Q+ +++ I LA   L+       PILL
Sbjct: 1   MRLGTTLVGPHRDDLQV-FINKKSAQEYASQGQQRSIVLSIKLAEIDLMHQILNEYPILL 59

Query: 319 LDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD-KSVFDSLNETAKFMRISNHQA 372
           LD++ + LD  ++  L   +    +Q F+T TD  S+   + +  +  RI +   
Sbjct: 60  LDDVMSELDNIRQKNLLNYINGK-TQTFITTTDINSISQEMIKIPRIFRIVSGTV 113


>gi|319648521|ref|ZP_08002737.1| hypothetical protein HMPREF1012_03776 [Bacillus sp. BT1B_CT2]
 gi|317389600|gb|EFV70411.1| hypothetical protein HMPREF1012_03776 [Bacillus sp. BT1B_CT2]
          Length = 85

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + I+ + +S +RNY  L L F+ +  + +G+N  GKTN++EAI  L+  +  R ++  ++
Sbjct: 1  MYIQNITLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKEL 60

Query: 65 TRIGSPSFFSTFARVEGMEGLADI 88
           R         +A++EG      +
Sbjct: 61 IRWDED-----YAKIEGRVIKKTV 79


>gi|283969319|gb|ADB54393.1| DNA replication and repair protein [Leptospira interrogans]
          Length = 133

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + ++++ RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DMTEFGSQGQKRSTVIALKAA 133


>gi|283969279|gb|ADB54374.1| DNA replication and repair protein [Leptospira interrogans serovar
           Copenhageni]
 gi|283969311|gb|ADB54389.1| DNA replication and repair protein [Leptospira kirschneri serovar
           Grippotyphosa]
 gi|283969313|gb|ADB54390.1| DNA replication and repair protein [Leptospira kirschneri serovar
           Grippotyphosa]
 gi|283969315|gb|ADB54391.1| DNA replication and repair protein [Leptospira kirschneri serovar
           Grippotyphosa]
 gi|283969335|gb|ADB54401.1| DNA replication and repair protein [Leptospira kirschneri serovar
           Grippotyphosa]
          Length = 133

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + ++++ RN LL  G  D S  S  + ++ E G+ I   R E+I  L+S     + K + 
Sbjct: 1   YNKILKHRNALLKSGNPDVSHLSIWDKKIIEKGIFILNKRKEIILELNSFYKINLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L         +     ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELVY-------KPNVNDQDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIGI-DQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|283969249|gb|ADB54359.1| DNA replication and repair protein [Leptospira interrogans serovar
           Bratislava]
 gi|283969255|gb|ADB54362.1| DNA replication and repair protein [Leptospira interrogans serovar
           Muenchen]
 gi|283969257|gb|ADB54363.1| DNA replication and repair protein [Leptospira interrogans serovar
           Muenchen]
 gi|283969263|gb|ADB54366.1| DNA replication and repair protein [Leptospira interrogans serovar
           Autumnalis]
 gi|283969271|gb|ADB54370.1| DNA replication and repair protein [Leptospira interrogans serovar
           Canicola]
 gi|283969273|gb|ADB54371.1| DNA replication and repair protein [Leptospira interrogans serovar
           Canicola]
 gi|283969275|gb|ADB54372.1| DNA replication and repair protein [Leptospira interrogans serovar
           Canicola]
 gi|283969277|gb|ADB54373.1| DNA replication and repair protein [Leptospira interrogans]
 gi|283969300|gb|ADB54384.1| DNA replication and repair protein [Leptospira interrogans serovar
           Pomona]
 gi|283969302|gb|ADB54385.1| DNA replication and repair protein [Leptospira interrogans serovar
           Pomona]
 gi|283969321|gb|ADB54394.1| DNA replication and repair protein [Leptospira interrogans]
 gi|283969325|gb|ADB54396.1| DNA replication and repair protein [Leptospira interrogans]
 gi|283969351|gb|ADB54409.1| DNA replication and repair protein [Leptospira interrogans serovar
           Bratislava]
          Length = 133

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + ++++ RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|317499297|ref|ZP_07957570.1| DNA replication and repair protein RecF [Lachnospiraceae
          bacterium 5_1_63FAA]
 gi|316893466|gb|EFV15675.1| DNA replication and repair protein RecF [Lachnospiraceae
          bacterium 5_1_63FAA]
          Length = 113

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + IK L +  +RNY  L + F +   +  GDN  GKTNILE+I   +  +  R     ++
Sbjct: 1  MIIKSLELKNYRNYDELSMNFASGTNLLYGDNAQGKTNILESIYLSATTKSHRGNKDREL 60

Query: 65 TRIGS-PSFFSTFARVEGMEGLADISIK 91
           +     +        +G++   D+ +K
Sbjct: 61 IKFEENEAHIRIHFEKQGIDHQLDMHLK 88


>gi|312865861|ref|ZP_07726083.1| putative DNA replication and repair protein RecF [Streptococcus
           downei F0415]
 gi|311098736|gb|EFQ56958.1| putative DNA replication and repair protein RecF [Streptococcus
           downei F0415]
          Length = 94

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
           +  +  S G+Q+ +++ + LA   LI   TG +PILLLD++ + LD  ++  L   + + 
Sbjct: 1   MNASFASQGQQRSLILSLKLAEIELIKAITGDSPILLLDDVMSELDNHRQLRLLDGIKE- 59

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
             Q F+T T       L +  K   +S    
Sbjct: 60  NVQTFITTTSLDHLQGLPDDLKIFTVSQGTI 90


>gi|283969253|gb|ADB54361.1| DNA replication and repair protein [Leptospira interrogans serovar
           Australis]
 gi|283969304|gb|ADB54386.1| DNA replication and repair protein [Leptospira interrogans serovar
           Pyrogenes]
 gi|283969337|gb|ADB54402.1| DNA replication and repair protein [Leptospira kirschneri serovar
           Grippotyphosa]
          Length = 133

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + ++++ RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|283969308|gb|ADB54388.1| DNA replication and repair protein [Leptospira interrogans serovar
           Wolffi]
          Length = 133

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + ++++ RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREIVLELNSFYRVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|283969293|gb|ADB54381.1| DNA replication and repair protein [Leptospira interrogans serovar
           Lai]
 gi|283969329|gb|ADB54398.1| DNA replication and repair protein [Leptospira interrogans serovar
           Lai]
          Length = 133

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + ++++ RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNHNLSRDLRLGYTSVGIHRDDLFIG-SDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|283969269|gb|ADB54369.1| DNA replication and repair protein [Leptospira interrogans serovar
           Bataviae]
          Length = 133

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + ++++ RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNHNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|283969251|gb|ADB54360.1| DNA replication and repair protein [Leptospira interrogans]
          Length = 133

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + ++++ RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILKHRNALLKSGNLDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|283969259|gb|ADB54364.1| DNA replication and repair protein [Leptospira interrogans]
 gi|283969285|gb|ADB54377.1| DNA replication and repair protein [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969287|gb|ADB54378.1| DNA replication and repair protein [Leptospira interrogans serovar
           IH CF1]
 gi|283969289|gb|ADB54379.1| DNA replication and repair protein [Leptospira interrogans]
 gi|283969291|gb|ADB54380.1| DNA replication and repair protein [Leptospira interrogans serovar
           Icterohaemorrhagiae]
 gi|283969296|gb|ADB54382.1| DNA replication and repair protein [Leptospira interrogans]
 gi|283969323|gb|ADB54395.1| DNA replication and repair protein [Leptospira interrogans]
 gi|283969327|gb|ADB54397.1| DNA replication and repair protein [Leptospira interrogans serovar
           Copenhageni]
 gi|283969331|gb|ADB54399.1| DNA replication and repair protein [Leptospira interrogans]
 gi|283969333|gb|ADB54400.1| DNA replication and repair protein [Leptospira interrogans]
 gi|283969339|gb|ADB54403.1| DNA replication and repair protein [Leptospira interrogans]
 gi|283969341|gb|ADB54404.1| DNA replication and repair protein [Leptospira interrogans]
 gi|283969345|gb|ADB54406.1| DNA replication and repair protein [Leptospira interrogans]
 gi|283969347|gb|ADB54407.1| DNA replication and repair protein [Leptospira interrogans]
 gi|283969349|gb|ADB54408.1| DNA replication and repair protein [Leptospira interrogans]
          Length = 133

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + ++++ RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILKHRNALLKSGNLDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|313611868|gb|EFR86327.1| DNA replication and repair protein RecF [Listeria monocytogenes
          FSL F2-208]
          Length = 70

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 34/68 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + ++ + +  FRNY +L L F     +F+G+N  GKTN+LEA+  L+  +  R  +  D 
Sbjct: 1  MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVLMLALAKSHRTTNDKDF 60

Query: 65 TRIGSPSF 72
                  
Sbjct: 61 IMWEKEEA 68


>gi|283969343|gb|ADB54405.1| DNA replication and repair protein [Leptospira kirschneri]
          Length = 133

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + RL+  RN LL  G  D S  S  + ++ E G+ I   R E+I  L+S     + K + 
Sbjct: 1   YNRLLNHRNALLKSGNPDVSHLSIWDKKIIEKGIFILNKRKEIILELNSFYKINLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L         +     ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELVY-------KPNVNDQDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIGI-DQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|283969265|gb|ADB54367.1| DNA replication and repair protein [Leptospira interrogans serovar
           Autumnalis]
          Length = 133

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + ++++ RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILKYRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GRDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|1213060|emb|CAA63915.1| recf [Mycobacterium smegmatis str. MC2 155]
          Length = 155

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 7/155 (4%)

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
           + S+    D    +S    +      L   R  +      L+GPHR DL +   D+    
Sbjct: 2   RSSVEAIEDAPGPESVEFYEAALLDALARRRDAELERGVCLVGPHRDDLELRLGDQPAK- 60

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
              S GE   + + + L    L+  + G  P+LLLD++ A LD  +R AL   V     Q
Sbjct: 61  GFASHGESWSMALALRLGAYELLC-SDGVEPVLLLDDVFAELDTSRRRALA-TVAGSAEQ 118

Query: 345 IFMT-GTDKSVFDSLNET---AKFMRISNHQALCI 375
           + +T    + + +  +      + +     +   +
Sbjct: 119 VLVTAAVGEDIPEDWDARRVEIRMVEDDGGRVSMV 153


>gi|283969281|gb|ADB54375.1| DNA replication and repair protein [Leptospira interrogans serovar
           Icterohaemorrhagiae]
          Length = 133

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + ++++ RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILKHRNALLESGNLDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|308450490|ref|XP_003088315.1| hypothetical protein CRE_15840 [Caenorhabditis remanei]
 gi|308248036|gb|EFO91988.1| hypothetical protein CRE_15840 [Caenorhabditis remanei]
          Length = 160

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           D S   +  E+   L   R  +     TL+GPHR DL+++     +   + S GE     
Sbjct: 21  DVSRETIAAEFRGALQAVRAQELDRGVTLVGPHRDDLVLELNGLPVK-GYASHGESWSFA 79

Query: 297 VGIFLAHARLIS-NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           + + L  A L+   + G  P++LLD++ A LD  +R+ L   V      I     ++ + 
Sbjct: 80  LALRLGMAVLLRGESAGGDPVILLDDVFAELDTRRRSKLMSAVQSFEQVIVTAAVEEDIP 139

Query: 356 DSLN 359
           + + 
Sbjct: 140 EGIA 143


>gi|21328235|gb|AAM48482.1| RecF [Listeria monocytogenes]
          Length = 106

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 3/105 (2%)

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           HR D +     + +    GS G+Q+   + I LA   LI   TG  P+LLLD++ + LD+
Sbjct: 1   HRDDSLFYINGQNV-QDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDD 59

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQA 372
            +++ L   +     Q F+T T  S  D    + A    +     
Sbjct: 60  YRQSHLLGAIEGK-VQTFVTTTSTSGIDHETLKQATTFYVEKGTV 103


>gi|283969306|gb|ADB54387.1| DNA replication and repair protein [Leptospira interrogans serovar
           Pyrogenes]
          Length = 133

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + +++  RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILIHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +    + 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIGTNQRD 113

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
           IT   GS G+++  ++ +  A
Sbjct: 114 IT-EFGSQGQKRSTVIALKRA 133


>gi|283969298|gb|ADB54383.1| DNA replication and repair protein [Leptospira interrogans]
          Length = 133

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + ++++  N LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILKHSNALLKSGNLDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|283969267|gb|ADB54368.1| DNA replication and repair protein [Leptospira interrogans serovar
           Autumnalis]
          Length = 133

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
            ++++ RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K +  
Sbjct: 2   NKILKYRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSGG 61

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
              L L    + K        ++E+ +KL      D     T +G HR DL +   D+  
Sbjct: 62  KDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQRD 113

Query: 283 TIAHGSTGEQKVVLVGIFLA 302
               GS G+++  ++ +  A
Sbjct: 114 ITEFGSQGQKRSTVIALKAA 133


>gi|283969317|gb|ADB54392.1| DNA replication and repair protein [Leptospira interrogans]
          Length = 133

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           +  + + RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNNIPKHRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|332071496|gb|EGI81990.1| DNA replication and repair recF domain protein [Streptococcus
          pneumoniae GA41301]
          Length = 63

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 38/63 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + ++ L++  FRNY   ++ F+ +  +F+G N  GKTN+LEAI FL+  R  R  +  ++
Sbjct: 1  MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNL 60

Query: 65 TRI 67
           + 
Sbjct: 61 IQF 63


>gi|213025877|ref|ZP_03340324.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 123

 Score = 99.6 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 2/124 (1%)

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              + +  + P    + +G    RR FLD   F  +        + +RL++ RN  L + 
Sbjct: 2   AHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQRNAALRQ- 60

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                     + ++  L  +I+  R E  +A++  + +  Q +  P   L+ +     + 
Sbjct: 61  VSRYEQLRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQ-QFLPEFSLTFSFQRGWEK 119

Query: 237 DQSF 240
           +  +
Sbjct: 120 ETDY 123


>gi|291520351|emb|CBK75572.1| hypothetical protein CIY_30610 [Butyrivibrio fibrisolvens 16/4]
          Length = 94

 Score = 99.6 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + IK + +  FRNY SL + FD   TI  GDN  GKTNILEA       +  + +   ++
Sbjct: 1  MIIKSIELENFRNYESLNINFDEHTTILFGDNAQGKTNILEAAYLSGTTKSHKGSRDKEI 60

Query: 65 TRIG-SPSFFSTFARVEGMEGLADISIK 91
           +   + S   T       +   DI +K
Sbjct: 61 IKFDKNESHIKTIISKNDRDYQIDIHLK 88


>gi|283969261|gb|ADB54365.1| DNA replication and repair protein [Leptospira interrogans serovar
           Autumnalis]
          Length = 133

 Score = 99.6 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + ++++ RN LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILKYRNALLKSGNPDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYKVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                G  G+++  ++ +  A
Sbjct: 113 DITEFGPQGQKRSTVIALKAA 133


>gi|283969283|gb|ADB54376.1| DNA replication and repair protein [Leptospira interrogans serovar
           Icterohaemorrhagiae]
          Length = 133

 Score = 98.8 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 8/141 (5%)

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + +++  R  LL  G  D S  S  + ++ E G+ I   R E++  L+S     + K + 
Sbjct: 1   YNKILIHRTALLKSGNLDISHLSIWDKKIVEKGIFILNKRREVVLELNSFYRVNLDKLSG 60

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               L L    + K        ++E+ +KL      D     T +G HR DL +   D+ 
Sbjct: 61  GKDGLELIYKPNVKD-------QDEFLEKLNRNLSRDLRLGYTSVGIHRDDLFIG-TDQR 112

Query: 282 ITIAHGSTGEQKVVLVGIFLA 302
                GS G+++  ++ +  A
Sbjct: 113 DITEFGSQGQKRSTVIALKAA 133


>gi|296394|emb|CAA50569.1| RecF [Staphylococcus aureus]
          Length = 89

 Score = 96.9 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           +GS G+Q+   + I LA   L++   G  PILLLD++ + LD+ ++  L   +     Q 
Sbjct: 1   YGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQT 59

Query: 346 FMTGTDKSVFD-SLNETAKFMRISNHQAL 373
           F+T T     D  +   AK  RI+  + +
Sbjct: 60  FVTTTSVDGIDHEIMNNAKLYRINQGEII 88


>gi|809744|emb|CAA32896.1| recF protein (1 is 2nd base in codon) [Pseudomonas putida]
          Length = 134

 Score = 96.1 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 9/139 (6%)

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
           AL  +    +  E      L+L+ +     D+       E  + L      D     T  
Sbjct: 1   ALKPVFERTLS-ELVELDGLTLSYYRGWDKDR-------ELQEVLASSLLRDQQMGHTQA 52

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
           GP R+DL +            S G+QK+V+  + +A   L+S       I L+D++ + L
Sbjct: 53  GPQRADLRLRLAGNNAADIL-SRGQQKLVVCALRIAQGHLVSQARRGHCIYLVDDLPSEL 111

Query: 327 DEDKRNALFRIVTDIGSQI 345
           D+  R AL R++ ++  Q 
Sbjct: 112 DDQHRRALCRLLEELRCQC 130


>gi|296537347|ref|ZP_06899213.1| recombination protein F [Roseomonas cervicalis ATCC 49957]
 gi|296262327|gb|EFH09086.1| recombination protein F [Roseomonas cervicalis ATCC 49957]
          Length = 126

 Score = 95.0 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/97 (44%), Positives = 62/97 (63%)

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           HR+DL +    K I     STGEQK +LV   LA A L+++  GFAP+LLLDE++AHLD 
Sbjct: 11  HRTDLRLVLLPKQIPAELCSTGEQKALLVSTVLAQAALVASHRGFAPLLLLDEVAAHLDP 70

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           ++R ALF  +  + +Q F+TGT+++ F  L   A+  
Sbjct: 71  ERRAALFAALDALPAQCFLTGTEEAPFAPLRGHAQLF 107


>gi|289810862|ref|ZP_06541491.1| recombination protein F [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 68

 Score = 94.6 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 32/68 (47%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR FR      V
Sbjct: 1  MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQPGRV 60

Query: 65 TRIGSPSF 72
           R    +F
Sbjct: 61 IRHEQEAF 68


>gi|289806572|ref|ZP_06537201.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 103

 Score = 94.2 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
            D A      S G+ K+++  + LA    ++  +G   + L+D+ ++ LD+ +R  L   
Sbjct: 6   ADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASR 65

Query: 338 VTDIGSQIFMTGTDKSV-FDSLNETAKFMRISNHQA 372
           +    SQ+F++        D  +E +K   +   + 
Sbjct: 66  LKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 101


>gi|157060592|gb|ABV03302.1| RecF [Chlamydia trachomatis]
          Length = 96

 Score = 92.7 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 32  FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
             G N  GKTN+LEA+  LS GR FR +   D  R G+  FF     +E +    ++   
Sbjct: 2   IFGLNAQGKTNLLEALYILSLGRSFRTSRLTDAIRFGASHFF-----IEAVFSHKEVFHT 56

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           L  + D+  + +  +   I  + EL     +    
Sbjct: 57  LSIQVDKKGKKILFDGAPITKLSELVGLFPVILFS 91


>gi|325067218|ref|ZP_08125891.1| DNA replication and repair protein RecF [Actinomyces oris K20]
          Length = 176

 Score = 92.7 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 8/162 (4%)

Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
              I   SSL+      E  PH + +     +   D++  AL       + +    +   
Sbjct: 18  RAQIAYRSSLLTHEGHPEPDPHDESAWLAGEETLLDET--ALATRLESAMGELHAREIDR 75

Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-----PI 316
              L+G HR DL +            S GEQ  + + + LA   ++            P+
Sbjct: 76  GANLVGAHRDDLSLFLTGLP-ARGFASHGEQWSLALALRLASYDMLRTDVDAYGGDGEPV 134

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           L+LD++ A LDE +R AL ++V      +     D  V   L
Sbjct: 135 LILDDVFASLDEQRRRALAQMVAGAQQVLLTAAVDDDVPTEL 176


>gi|45692|emb|CAA32895.1| unnamed protein product [Pseudomonas putida]
          Length = 99

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + ++  RN   + L+   +  I  G NG GKT++LEA+  L   R FR      V
Sbjct: 1   MSLRRIMVTAVRNLHPVTLLPSPRINILYGANGSGKTSVLEAVHLLGLARSFRSTRLNPV 60

Query: 65  TRIGSPSFFSTFARVEGME-GLADISIKLETRDDRSVRC 102
            +    +  + F  V+  E G +++ +  E + + ++R 
Sbjct: 61  IQY-EQAACTVFGEVQLTEGGTSNLGVSRERQGEFTIRI 98


>gi|325912269|ref|ZP_08174666.1| putative DNA replication and repair protein RecF [Lactobacillus
           iners UPII 143-D]
 gi|325475928|gb|EGC79097.1| putative DNA replication and repair protein RecF [Lactobacillus
           iners UPII 143-D]
          Length = 105

 Score = 92.3 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
             +K     + S G+Q+ +++ I LA   L+       PILLLD++ + LD  ++  L  
Sbjct: 6   LSNKKSAQEYASQGQQRSIVLSIKLAEIDLMHQILNEYPILLLDDVMSELDNIRQKNLLN 65

Query: 337 IVTDIGSQIFMTGTD-KSVFDSLNETAKFMRISNHQA 372
            +    +Q F+T TD  S+   + +  +  RI +   
Sbjct: 66  YINGK-TQTFITTTDINSISQEMIKIPRIFRIVSGTV 101


>gi|153084|gb|AAA73950.1| homologue; putative [Staphylococcus aureus]
          Length = 103

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           R D+  D         +GS G+Q+   + I LA   L++   G  P    D + + LD+ 
Sbjct: 1   RDDISFDVNGMD-AQTYGSQGQQRTTALSIKLAEIELMNIEVGNIPSYYCD-VLSELDDS 58

Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQAL 373
           ++  L   +     Q F+T T     D  +   AK  RI+  + +
Sbjct: 59  RQTHLLSTIQHK-VQTFVTTTSVDGIDHEIMNNAKLYRINQGEII 102


>gi|148927260|ref|ZP_01810831.1| DNA recombination/replication protein RecF [candidate division TM7
           genomosp. GTL1]
 gi|147887346|gb|EDK72799.1| DNA recombination/replication protein RecF [candidate division TM7
           genomosp. GTL1]
          Length = 107

 Score = 91.1 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            L + +FR+Y    +      TI  G NG GKTN+LEA+  L+ G  FR AS  ++ +IG
Sbjct: 4   SLRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSFR-ASDQELGQIG 62

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              ++   AR+   E     SI  E       +   ++ V     
Sbjct: 63  MD-WWRLDARLVANESR---SILFEAEKTTGRKTFILDGVKKATP 103


>gi|325066319|ref|ZP_08124992.1| DNA replication and repair protein RecF [Actinomyces oris K20]
          Length = 81

 Score = 90.3 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + +  L++ +FR+Y SL L  +   + FVG NG GKTN++EAI +L+     R  +   +
Sbjct: 1  MYVSDLSLDDFRSYRSLVLSLEPGPSAFVGSNGQGKTNLVEAIVYLATLSSHRIGADTAL 60

Query: 65 TRIGSPS 71
           R  +P 
Sbjct: 61 VRRAAPG 67


>gi|326330616|ref|ZP_08196920.1| Smc [Nocardioidaceae bacterium Broad-1]
 gi|325951457|gb|EGD43493.1| Smc [Nocardioidaceae bacterium Broad-1]
          Length = 330

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 98/276 (35%), Gaps = 29/276 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKRLTLKGFKSFASATTLELEPGITCIVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111
             DV   G+        A V       D ++ +E  +                IN    R
Sbjct: 61  MEDVIFAGTSGRAPLGRAEVSLTIDNTDGALPIEYAEVTISRTMFRNGGSEYAINGSPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I      +RR F++     +  R        E
Sbjct: 121 LLDVQDLLSDSGIGREMHVIVGQGQLDTILRATPEDRRGFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS-SLIMEYVQKENFP 222
           + +R  +               I  Q+  LG +  +AR      +        +  ++  
Sbjct: 176 KALRKLDSTQVNLDRLQDLLVEIRRQLKPLGRQAEVARQAQTVQMDVRDAKARIYADDLV 235

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
             K  L    +   + +  A + E  + + +GR+ +
Sbjct: 236 TAKTELD--KELADEGALLARRAEVEETIAEGREQE 269


>gi|1388127|gb|AAB02817.1| RecF [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
          Length = 112

 Score = 88.0 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           IGP ++D         +     S G+ K+++  + LA    +        + L+D+ ++ 
Sbjct: 1   IGPQKADFRFRANGLPVEDVL-SRGQLKLLMCALRLAQGEYLVAQKERQCLFLIDDFASE 59

Query: 326 LDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN----ETAKFMRISNH 370
           LD  KR  L   + + GSQ+F+T   K   + +     E     ++   
Sbjct: 60  LDPIKRELLAHRLRESGSQVFVTAITKDQLNQMQWQESEQDSLFQVQQG 108


>gi|254507673|ref|ZP_05119805.1| ATPase [Vibrio parahaemolyticus 16]
 gi|219549370|gb|EED26363.1| ATPase [Vibrio parahaemolyticus 16]
          Length = 583

 Score = 86.5 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 80/376 (21%), Positives = 138/376 (36%), Gaps = 42/376 (11%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI---------SFLSPGR 54
           +KIK +NI  FRN+ SL L  FD    + VG NG GKT +L+AI         S L  G 
Sbjct: 92  VKIKEINIENFRNFDSLFLSDFDPNINVIVGTNGAGKTTLLDAIDTSLSWLRNSILKTGG 151

Query: 55  GFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-RVV 113
                S  D+       + +  + +E       I + LE    R     + N ++  R +
Sbjct: 152 SGNYISEKDINLYSDIPYATISSVIEVN---HKIDVPLEISKSREGTAKRRNQLLAHRTI 208

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
            E  K         +   +               V   D      +I F++    RN L 
Sbjct: 209 GEFYKIANEKNPTFNFPLL-----AYYNVMRSYDVNPRDISGHDEVIGFDKFEGYRNSLN 263

Query: 174 TEGYFDS--SWCSSIEAQMAELGVKINIARVEMINA--LSSLIMEYVQ--KENFPHIKLS 227
            +  F S  +W   ++  +A     ++ A   ++    L+  + E ++   E+    + S
Sbjct: 264 GKTDFQSFFNWYKRLDDILARRESNVSKA--TVLKELGLTPSLFEKLEILAEHDEETRES 321

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS---MSRRTLIGPHRS---DLIVDYCDKA 281
           L        D+    L E+YAK+            M+  + +        DL+++   + 
Sbjct: 322 LEVIRSKFPDEVDDILDEDYAKQAKLMVNQAISSFMTGYSNLEVQLEPFVDLLIEKNGRK 381

Query: 282 ITIAHGSTGEQKVVLVGI-----FLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALF 335
           I++   S GE K +L  I      L      + N      ++L+DE+  HL    +  + 
Sbjct: 382 ISVLSLSQGE-KTLLTLIADLTKRLIQLNPSLENPLQGQGVILIDEVDLHLHPKWQRKIA 440

Query: 336 RIVTDI--GSQIFMTG 349
             +       Q F+T 
Sbjct: 441 NNLKKTFPNCQFFLTT 456


>gi|269955959|ref|YP_003325748.1| chromosome segregation protein SMC [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304640|gb|ACZ30190.1| chromosome segregation protein SMC [Xylanimonas cellulosilytica DSM
           15894]
          Length = 1203

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 102/278 (36%), Gaps = 28/278 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      R  R   
Sbjct: 1   MHLKTLTLRGFKSFASATTLSFEPGITCVVGPNGSGKSNVVDALAWVMGEQGARSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRS-VRCLQINDVVIR 111
             DV   G+              ++  +G   I    + +     RS      IN    R
Sbjct: 61  MEDVIFAGTAGRPPLGRAEVSLTIDNTDGALPIDYTEVTISRTLFRSGGSEYAINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVVVGQGQLDAVLRASPEERRGFVEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R  +++       +   + +  Q+  LG +   AR        + + +   +     
Sbjct: 176 KALRKLDQMAGNLARLTDLTAELRRQLGPLGRQAEAARKA--RTFQADLRDAKARLLADD 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +   L      + D++    +++  ++  D  + +   
Sbjct: 234 LAQLLAQLEAERADEAVLRERQQATEQALDAARAELAR 271


>gi|162451513|ref|YP_001613880.1| hypothetical protein sce3241 [Sorangium cellulosum 'So ce 56']
 gi|161162095|emb|CAN93400.1| hypothetical protein sce3241 [Sorangium cellulosum 'So ce 56']
          Length = 423

 Score = 84.2 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 66/373 (17%), Positives = 119/373 (31%), Gaps = 63/373 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L++ +FR + SL L F    T  VG NG GKT+IL+A++ L            + 
Sbjct: 1   MKITRLSLRDFRGFRSLDLDFSPDVTALVGVNGAGKTSILDALALLLSC-------LVES 53

Query: 65  TRIGSPSFFSTFA---RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            R   P   +  A   R+        ++ ++  +  +      +          L+    
Sbjct: 54  IRSEEPETIAPSASDVRIGASTAQLSLTAEISVQPTQWSIAKTLPGHPPGAPSALDALHE 113

Query: 122 ISWLVPSMDRIFSGLSMER--------RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
                 +   I  G             R  LD       P     +  ++  +       
Sbjct: 114 PV--AAAQTTIALGSPFLPLVVYFPTNRSALDIPERIRTPHAFDALSAYDGALE---GGA 168

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
           +       W    E  + E          +++  L                       LD
Sbjct: 169 SNFRGFFEWFRQEEDILNE---------QQVLQILHE------------------DQGLD 201

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
           G    S      +  + L  G +   + RR    P R  + V+     + +A  S GE+ 
Sbjct: 202 GSSTPSPLPAVRKAIEALLPGARRVRIERR----PQR--MTVELNGTRLDVAQLSDGEKC 255

Query: 294 VVL----VGIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIF 346
           ++     +   +A A   I N      ++L+DEI  HL    +  +   +  +   +Q  
Sbjct: 256 LLAMAGDLARRMALAAPKIENPLDHPAVVLIDEIELHLHPGLQRVILPRLQKVFPRAQFI 315

Query: 347 MTGTDKSVFDSLN 359
           +T     V  SL+
Sbjct: 316 ITTHSPQVLSSLH 328


>gi|13476749|ref|NP_108318.1| overcoming lysogenization defect protein [Mesorhizobium loti
           MAFF303099]
 gi|14027510|dbj|BAB53779.1| mlr8165 [Mesorhizobium loti MAFF303099]
          Length = 608

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 74/402 (18%), Positives = 135/402 (33%), Gaps = 74/402 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           + I  + I  FR++A L +      T  +G+N  GKTN+L+A+      +    +R    
Sbjct: 1   MHISKITIRNFRSFAHLDVRIAENTTCIIGENNTGKTNLLQALRLCLDVNLASSYRSLLP 60

Query: 62  ADV---TRIGSPSFFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDEL 116
           +D+     +  PS       ++   G  +    +          R +      ++V D+L
Sbjct: 61  SDIHSAVDLSHPSQVVIAIEIDQWAGKVNEEALVGGWQVAPDRARLIYRFRPKLKVRDDL 120

Query: 117 NKHLRISWLVPSMDRI------FSGLSMERR---------------RFLDRMVFAIDPRH 155
                   + P    I       +G    R                RF D   F +   H
Sbjct: 121 ADET----IEPGDLTIDDYQWEITGGGDPRHDVATVDWDQDIGVGIRFSDLQSFLV--VH 174

Query: 156 RRRMIDFERLMRG-RN----RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
              + D E  +R  R+    RL+     D +   ++   + +    I       I AL+ 
Sbjct: 175 LPALRDVESDLRQTRSSPLTRLIAASEIDHAEKDALVQALRDANQTIAE--SPTIEALAE 232

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
            I     K + P   +   G   G  + SF A+ +     L +    D    +  +G + 
Sbjct: 233 AIDASFTKVSGPAFDM---GVGLGLAEPSFQAIVKALRILLTNAAVTDFDPAQNGLGLNN 289

Query: 271 ---SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
                + ++Y +K                    LA             I+L +E  AHL 
Sbjct: 290 ILYVSIWIEYFNK-------------------RLAQ------EKSAGQIILFEEPEAHLH 324

Query: 328 EDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
              + ALF  +  +  Q  +T T  +   S  + + F+ ++N
Sbjct: 325 PQLQLALFGALKALPFQSILT-THSTHITSQADLSSFVVLTN 365


>gi|297156893|gb|ADI06605.1| chromosome segregation protein [Streptomyces bingchenggensis BCW-1]
          Length = 1345

 Score = 83.8 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 99/294 (33%), Gaps = 43/294 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +       RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPTGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210
           + +R  + +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 211 LIMEYVQKENFPHIKLSL---TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            + E ++ E      L     T   + +  Q   A  EE  ++L   R  D+  
Sbjct: 236 TMREALRTEIADEAALKQRKETAEAELRTAQQREAALEEQVRQLAP-RLRDAQQ 288


>gi|50955123|ref|YP_062411.1| chromosome segregation protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951605|gb|AAT89306.1| chromosome segregation protein [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 1181

 Score = 83.0 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 50/281 (17%), Positives = 107/281 (38%), Gaps = 29/281 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A      F+   T  +G NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAQPTTFAFEPGVTCVIGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111
             DV   G+ +      A V      +D ++ +E  +                IN    R
Sbjct: 61  MEDVIFAGTETRGPLGRAEVHLTIDNSDGALPIEYTEVTISRTLFRNGGSEYAINGQSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDVQELLSDSGLGREMHVIVGQGQLDAVLRATPEERRGFIEEAAGILKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIMEYVQKENFP 222
           + +R  + + T     S     +  Q+  LG +  IAR    I A+       +  ++  
Sbjct: 176 KTLRKLDAMQTNLTRLSDLAGEVRRQLKPLGHQAEIAREAQSIAAIVRDARARLLADDVV 235

Query: 223 HIKLSLTGFL--DGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ +L G +  + +       L+E+  +KL    +++   
Sbjct: 236 GLRRTLDGHVRTEAERHTEQIVLQEQLEQKLLRRTRLEQAQ 276


>gi|296129309|ref|YP_003636559.1| chromosome segregation protein SMC [Cellulomonas flavigena DSM
           20109]
 gi|296021124|gb|ADG74360.1| chromosome segregation protein SMC [Cellulomonas flavigena DSM
           20109]
          Length = 1186

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 100/275 (36%), Gaps = 29/275 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKTLTLRGFKSFASATTLSFEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111
             DV   G+        A V       D ++ +E  +                IN    R
Sbjct: 61  MEDVIFAGTSGRPPLGRAEVSLTIDNTDGALPIEYSEVTISRTLFRNGGSEYAINGRACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDIQDLLSDSGLGREMHVIVGQGQLDAVLRATPEERRGFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR-VEMINALSSLIMEYVQKENFP 222
           + +R  + +           + I  Q+  LG +  +AR   ++ A        +  ++  
Sbjct: 176 KALRKLDAMQGNLTRLGDLTAEIRRQLGPLGRQAEVARKAAVVQADLRDSRARLLADDLA 235

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            ++  L    +   + +    +E    +L + R  
Sbjct: 236 QLRARLEQ--EIADESAVRERRELVEGELAEARAR 268


>gi|117928777|ref|YP_873328.1| condensin subunit Smc [Acidothermus cellulolyticus 11B]
 gi|117649240|gb|ABK53342.1| condensin subunit Smc [Acidothermus cellulolyticus 11B]
          Length = 1188

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 98/279 (35%), Gaps = 29/279 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+NI++A++++      +  R   
Sbjct: 1   MYLKSLTLRGFKSFASTTTLRFEPGITCVVGPNGSGKSNIVDALAWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
             DV   G+ S            ++  +G   I                    IN    R
Sbjct: 61  MEDVIFAGTASRPPLGRAEVVVTIDNSDGALPIEYSEVTLSRIMFRNGGSEYAINGRPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      ++ +      ERR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLEEVLHATPEERRGFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R    +       +   + +  Q+  LG +   AR      + + + +   +     
Sbjct: 176 KALRKLEAMQANLTRLADLTTELRRQLGPLGRQAETARKA--ARIQADLRDARLRLLADD 233

Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +  L      D   + +  A ++E  + +   R  ++  
Sbjct: 234 LVTLRAELERDIADENAARARRDELEQHVRRLRARETEL 272


>gi|288923593|ref|ZP_06417703.1| chromosome segregation protein SMC [Frankia sp. EUN1f]
 gi|288345055|gb|EFC79474.1| chromosome segregation protein SMC [Frankia sp. EUN1f]
          Length = 1256

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 111/279 (39%), Gaps = 29/279 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++AI+++      +  R  +
Sbjct: 1   MHLKSLTLRGFKSFASSTTLHLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGT 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
            +DV   G+P+  +   A V      AD ++ +E  +    R +         IN    R
Sbjct: 61  MSDVIFAGTPARPALGRAEVLLTIDNADGALPIEYAEVTVGRLMFRSGESEYTINGTACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + L +      +D +      +RR F++     +  R        E
Sbjct: 121 LLDIQELMSDSGIGRELHVVVGQGQLDAVLHARPEDRRSFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE-MINALSSLIMEYVQKENFP 222
           + +R    +       +   + +  Q+  LG +  IAR   +I A        +  ++  
Sbjct: 176 KALRKLEAMAANLTRLTDLSAELRRQLGPLGRQAEIARKAGVIQASLRDARLRLLADDLA 235

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             + S+    D   +++  A      + L DG++ ++  
Sbjct: 236 TARASV--VTDAADEEALRARATRTERVLADGQRREAEL 272


>gi|300723965|ref|YP_003713279.1| hypothetical protein XNC1_3107 [Xenorhabdus nematophila ATCC 19061]
 gi|297630496|emb|CBJ91161.1| hypothetical protein XNC1_3107 [Xenorhabdus nematophila ATCC 19061]
          Length = 539

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 66/365 (18%), Positives = 119/365 (32%), Gaps = 52/365 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  +NI  FR+          +  IFVG N  GKTN  EAI +   G   +  S ++ 
Sbjct: 2   MMINRVNIKNFRSIECETFECG-KFNIFVGQNNTGKTNFFEAIEWFFNGLP-KNKSISE- 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADIS-IKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                         +E    L   S +K E+   + ++ L+ ND VI     L  + R  
Sbjct: 59  VHRNRDINNEISVEIEFTGALYGASNMKNESNKAKIMKLLEGNDKVIVRRTSLTPNKRTI 118

Query: 124 WLV-PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            +    + ++ +G       FL +  +    ++   +  +            +       
Sbjct: 119 IISGNEIKKLPTGFDSALNDFLPKFEYVHTRQYFDEVAKYSA----------KSPVGIML 168

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSF 240
            S +E  + +          E  +    L  +     K  F  +   +   L+ +FD+  
Sbjct: 169 SSVLEEMLEDN-----HQYQEFKDKFEKLFNDENSEVKIAFEKLGNRVQFHLEKQFDECT 223

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI--VDYCDKAITIAHGST---GEQKVV 295
               E                      P   DL+     C       + S    G Q+ +
Sbjct: 224 KVSFEVKR-------------------PDFDDLLKNFQTCVDDGVDTYASEKGDGMQRAL 264

Query: 296 LVGIFLAHARL--ISNTTGFAPILLLDEISAHLDEDKRNAL---FRIVTDIGSQIFMTGT 350
           ++ I  A+A         G + +  +DE   HL    +  L      + +   Q+F+  T
Sbjct: 265 MLAIIQAYADYRKDREDAGKSFLFFIDEAELHLHPTAQRKLKNVLLELCEKLDQVFI-NT 323

Query: 351 DKSVF 355
             SVF
Sbjct: 324 HSSVF 328


>gi|284992407|ref|YP_003410961.1| chromosome segregation protein SMC [Geodermatophilus obscurus DSM
           43160]
 gi|284065652|gb|ADB76590.1| chromosome segregation protein SMC [Geodermatophilus obscurus DSM
           43160]
          Length = 1188

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +  L +  F+++AS   L  +   T  VG NG GK+N+++AI+++      +  R   
Sbjct: 1   MHLSSLTLKGFKSFASATTLRLEPGITAVVGPNGSGKSNVVDAIAWVLGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+              ++  +G   I    + +  R  RS     +IN   +R
Sbjct: 61  MEDVIFAGTAGRPALGRAEVTLTIDNSDGALPIDYTEVSITRRMYRSGESEYEINGDKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D + SG   +RR F++     +  R        E
Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGQLDAVLSGRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KALRKLDAMQANLDRLADLTAELRRQLKPLGRQAEVARRA 215


>gi|158312997|ref|YP_001505505.1| chromosome segregation protein SMC [Frankia sp. EAN1pec]
 gi|158108402|gb|ABW10599.1| chromosome segregation protein SMC [Frankia sp. EAN1pec]
          Length = 1263

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 105/279 (37%), Gaps = 29/279 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++AI+++      +  R  +
Sbjct: 1   MHLKSLTLRGFKSFASSTTLHLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGT 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
            +DV   G+PS            ++  +G   I     T      R       IN    R
Sbjct: 61  MSDVIFAGTPSRPALGRAEVLLTIDNTDGALPIEYSEVTVGRLMFRSGESEYTINGTTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + L +      +D +      +RR F++     +  R        E
Sbjct: 121 LLDIQELMSDSGIGRELHVIVGQGQLDAVLHARPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE-MINALSSLIMEYVQKENFP 222
           + +R    +       +   + +  Q+  LG +  IAR   +I A        +  ++  
Sbjct: 176 KALRKLEAMAANLTRLTDLSAELRRQLGPLGRQAEIARKAGVIQAALRDSRLRLLADDLA 235

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             + ++    D   + +      +  K L DG++ ++  
Sbjct: 236 TARCAIAS--DAADEDALRLRVAQTEKALADGQRREAEL 272


>gi|213648786|ref|ZP_03378839.1| recombination protein F [Salmonella enterica subsp. enterica
          serovar Typhi str. J185]
          Length = 63

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 26/50 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + +  L I +FRN  +  L         VG NG GKT++LEAI  L  GR
Sbjct: 1  MSLSRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGR 50


>gi|89897383|ref|YP_520870.1| hypothetical protein DSY4637 [Desulfitobacterium hafniense Y51]
 gi|89336831|dbj|BAE86426.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 708

 Score = 81.9 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 140/389 (35%), Gaps = 63/389 (16%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           R+ I  L I  +R +  + + F     + +G+N  GKT IL+A+        F+ ++   
Sbjct: 38  RMYISRLKIQNYRCFQDVEIEFSEGLNVIIGENNCGKTTILKALQCF-----FKGSNT-- 90

Query: 64  VTRIGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKH 119
               GS      F + +   E   +I+  L  +  +  +      +   + ++V      
Sbjct: 91  ----GSAMGIDDFNKGITIGEKPPEITFVLTIQSSKHEKAQDKAVVASWLTKLVSPWEAT 146

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFA-IDPRHRRRMIDFERLMR----------- 167
           L   + +P         + ++R   D       D R+ ++    ER ++           
Sbjct: 147 LTYKFFLPE--------ADQKRYVADIRCIQDDDDRNSKKWAVLERHLKKYTPRIYGGNY 198

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                  + Y D   C  ++A + ++  K+   R  ++  + +  ++    E     + +
Sbjct: 199 ESKNRADQEYLDKFHCEVLDA-LRDVESKMFTGRNALLKQVLNFFVDSDLIEKEETERET 257

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR--------TLIGPHRSDLIVDYCD 279
           L    +  F+ +  +L     +++   +  +   +         TL G      ++    
Sbjct: 258 LQVQRNQTFESTSSSLVANMIERVSVSKIFELTEKTGAAVGGQPTLGGQLDESDVLSVLK 317

Query: 280 KAITIAHGST--------GEQKVVLVGIFLAHARLI-SNTTGFA----PILLLDEISAHL 326
             I    G          G   ++ + + L+  +++ S+  G      P+LL++E  AHL
Sbjct: 318 LMIKKETGIEVPIVNNGMGYNNLIYISLLLSKFKMLVSSEMGENAKVFPMLLIEEPEAHL 377

Query: 327 DEDKRNALFRIVTD------IGSQIFMTG 349
               + +  R + D      I  QIF+T 
Sbjct: 378 HPALQYSFLRFLKDEMDKQEISRQIFITT 406


>gi|282889710|ref|ZP_06298249.1| hypothetical protein pah_c004o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500284|gb|EFB42564.1| hypothetical protein pah_c004o057 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 107

 Score = 81.9 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
              TLIGPH+ DL +   DK       S G+Q+  +  + LA    +   T   P++L+D
Sbjct: 1   MGCTLIGPHKDDLNLCLDDKEARY-FASEGQQRSFVAALKLAEWSSLKAVTEENPLMLID 59

Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGT----DKSVFDSLN 359
           +     D  ++  L + +  +  Q+F+T T    D     SL 
Sbjct: 60  DAGMSWDAFRKAKLLKYIEGL-HQVFLTTTQDLPDDEAPASLK 101


>gi|332670006|ref|YP_004453014.1| chromosome segregation protein SMC [Cellulomonas fimi ATCC 484]
 gi|332339044|gb|AEE45627.1| chromosome segregation protein SMC [Cellulomonas fimi ATCC 484]
          Length = 1186

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 50/273 (18%), Positives = 95/273 (34%), Gaps = 27/273 (9%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKTLTLRGFKSFASATTLTFEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I         T          IN    R
Sbjct: 61  MEDVIFAGTAGRPPLGRAEVALTIDNTDGALPIEYTEVTISRTLFRNGGSEYAINGQGCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGLGREMHVIVGQGQLDAVLRATPEERRGFVEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R  + +             I  Q+  LG +  +AR   +   S L     +      
Sbjct: 176 KALRKLDAMQANLTRLGDLTGEIRRQLGPLGRQAEVARKAAVVQ-SDLRDARARLLADDL 234

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            +L+ T   +   + +  A + E    L   R 
Sbjct: 235 AQLTATLEQEIADETALLARRAEVEGALAQHRD 267


>gi|302537172|ref|ZP_07289514.1| predicted protein [Streptomyces sp. C]
 gi|302446067|gb|EFL17883.1| predicted protein [Streptomyces sp. C]
          Length = 667

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 105/282 (37%), Gaps = 35/282 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             DV   G+              ++  +G   I        ++  R   S    QIN   
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIDYAEVTITRIMFRGGSSE--YQINGDT 118

Query: 110 IRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
            R++D         + + + +      +D +       RR F++     +  R       
Sbjct: 119 CRLLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPTGRRAFIEEAAGVLKHR-----KR 173

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
            E+ +R  + +             +  Q+  LG +  +AR      + + + +   +   
Sbjct: 174 KEKALRKLDAMQANLARVQDLADELRRQLKPLGRQAAVARRA--AVIQADLRDAKLRLLA 231

Query: 222 PHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFDGRKMDSMS 261
             + ++L G L+ +   + +    KE   + L D  + ++  
Sbjct: 232 DDL-VALRGALEAEIADEAALKERKEAAERDLADALRREAEL 272


>gi|46200852|ref|ZP_00207873.1| COG1195: Recombinational DNA repair ATPase (RecF pathway)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 83

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 47/75 (62%)

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            I LA  R+ + T G AP+LLLDE++AHLDE +R ALF  +  +  Q +MTGTD  +F  
Sbjct: 2   SIVLAQGRVQNQTGGRAPLLLLDEVAAHLDEVRRAALFDELCALRVQSWMTGTDAMLFAG 61

Query: 358 LNETAKFMRISNHQA 372
             E A+F R+++   
Sbjct: 62  FGERAQFFRVTDATV 76


>gi|294631629|ref|ZP_06710189.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292834962|gb|EFF93311.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 476

 Score = 81.5 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 100/295 (33%), Gaps = 50/295 (16%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +       RR F++     +  R        E
Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGQLDSVLHADPAGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210
           + +R  + +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLDSMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL-FDGRKMDSMSRRT 264
            + E +Q E      L           +   A ++E A+ L  + R  D + R T
Sbjct: 236 RLREALQAEIADEAAL----------KERKEAAEQELARALQREARLEDEVRRLT 280


>gi|29829200|ref|NP_823834.1| chromosome segregation protein [Streptomyces avermitilis MA-4680]
 gi|29606306|dbj|BAC70369.1| putative chromosome segregation protein [Streptomyces avermitilis
           MA-4680]
          Length = 1202

 Score = 81.1 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 99/279 (35%), Gaps = 29/279 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R  + +             +  Q+  LG +  +AR      + + + +   +     
Sbjct: 176 KALRKLDAMRANLARVQDLTDELRRQLKPLGRQAAVARRA--AVIQADLRDARLRLLADD 233

Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           + +L +    +   + +    KE    +L    + +++ 
Sbjct: 234 LVRLRVALQTEVADEAALKERKEAAEAELKRALQREALL 272


>gi|21223933|ref|NP_629712.1| chromosome associated protein [Streptomyces coelicolor A3(2)]
 gi|256784967|ref|ZP_05523398.1| chromosome associated protein [Streptomyces lividans TK24]
 gi|4007736|emb|CAA22420.1| putative chromosome associated protein [Streptomyces coelicolor
           A3(2)]
          Length = 1186

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 98/293 (33%), Gaps = 49/293 (16%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210
           + +R  + +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
            + E +Q E      L           +   A ++E  K L     ++   RR
Sbjct: 236 RMREALQAEVADEAAL----------KERKEAAEQELGKALRREADLEDEVRR 278


>gi|296270736|ref|YP_003653368.1| chromosome segregation protein SMC [Thermobispora bispora DSM
           43833]
 gi|296093523|gb|ADG89475.1| chromosome segregation protein SMC [Thermobispora bispora DSM
           43833]
          Length = 1234

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 104/273 (38%), Gaps = 27/273 (9%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKKLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALAWVMGEHSAKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S            ++  +G   I    + +     RS +    IN    R
Sbjct: 61  MEDVIFAGTASRPPLGRAEVTLTIDNSDGALPIDYTEVTISRLMFRSGQSEYAINGDPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D++      ERR F++     +  R        E
Sbjct: 121 LLDIQELLSDTGIGREMHVIVGQGQLDQVLHAGPEERRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R  + +           + +  Q+  LG +  IAR   +   + L    ++      
Sbjct: 176 KALRKLDAMQANLNRLQDLITELRRQLKPLGRQAEIARKAAVIQ-ADLRDARLRLLADDV 234

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           + L      +   + +  A + E   +L + ++
Sbjct: 235 VTLREELRREEADEAAVRARRAEVEAQLAESQR 267


>gi|302554413|ref|ZP_07306755.1| chromosome segregation protein SMC [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472031|gb|EFL35124.1| chromosome segregation protein SMC [Streptomyces viridochromogenes
           DSM 40736]
          Length = 1201

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 98/291 (33%), Gaps = 44/291 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMIN---- 206
           + +R  + +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            L   +   V  E     +   +   + +  Q   AL E+  ++L    + 
Sbjct: 236 RLRDALKAEVADEAALKERKE-SAEQELRKAQQREALLEDEVRQLTPRLQR 285


>gi|239991066|ref|ZP_04711730.1| putative chromosome segregation protein [Streptomyces roseosporus
           NRRL 11379]
          Length = 732

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 107/324 (33%), Gaps = 50/324 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMI----- 205
           + +R  + +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLDAMGANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 206 ---NALSSLI---MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
              +AL   I    E  ++++    +L      + + +     L     +      ++  
Sbjct: 236 TLRDALRDEIADEAELKKRKDVAEAELKTALLREAELEGEVRRLAPRLQRAQQTWYELSQ 295

Query: 260 MSRRTLIGPHRSDLIVDYCDKAIT 283
           ++ R       +D  V    +A  
Sbjct: 296 LAERVRGTISLADARVRSASQAPA 319


>gi|297202630|ref|ZP_06920027.1| chromosome segregation protein SMC [Streptomyces sviceus ATCC
           29083]
 gi|197713205|gb|EDY57239.1| chromosome segregation protein SMC [Streptomyces sviceus ATCC
           29083]
          Length = 1201

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 98/279 (35%), Gaps = 29/279 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +       RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPTGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R  + +             +  Q+  LG +  +AR      + + + +   +     
Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRA--AVIQADLRDARLRLLADD 233

Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           + +L      +   + +    KE   ++L    + +++ 
Sbjct: 234 LVRLRQALQAEVADEAALKERKEAAEQELKKALQREALL 272


>gi|289805654|ref|ZP_06536283.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 117

 Score = 80.3 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 9/123 (7%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           F  +        + +RL++ RN  L +           + ++  L  +I+  R E  +A+
Sbjct: 1   FHNEAGFFTAWSNLKRLLKQRNAALRQ-VSRYEQLRPWDKELIPLAEQISTWRAEYSSAI 59

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
           +  + +  Q +  P   L+ +     + +        +YA  L    + D M   T  GP
Sbjct: 60  AQDMADTCQ-QFLPEFSLTFSFQRGWEKET-------DYADVLERSFERDRMLTYTAHGP 111

Query: 269 HRS 271
           +++
Sbjct: 112 NKA 114


>gi|326797730|ref|YP_004315549.1| SMC domain protein [Sphingobacterium sp. 21]
 gi|326548494|gb|ADZ76879.1| SMC domain protein [Sphingobacterium sp. 21]
          Length = 551

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 116/361 (32%), Gaps = 45/361 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  + I  FR+             IFVG N  GKTN  EAI F   G G R ++  ++
Sbjct: 1   MKISRIKIENFRSIKETEFTTTD-FNIFVGQNNCGKTNFFEAIEFFFNGLG-RGSNINEL 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                             +   +I +++E    ++   L  N      ++       +  
Sbjct: 59  --------------KYKRDPQNEILVEIEFIGAQNGASLMQNQTNKTKIENALNGSDVVI 104

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
              +          +R+ +++             + DF         L    Y  +    
Sbjct: 105 FQRTSSI-----PNKRKMYVNGSEVQPGTGFDAALNDF---------LPKFEYISTKQY- 149

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             +A +A+   K     + +   L++++    Q + F      L    D    Q F  + 
Sbjct: 150 -YDA-VAKY-SKTTPIGIMLSGVLNTILQGNQQYQAFQAKFAELFEDDDSAIKQEFVNIG 206

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST-----GEQKVVLVGI 299
                 L       +  +  +  P   DL+  +          S      G Q+ +++ I
Sbjct: 207 NSVKIHLEKQFPDTTKVKFEVTPPQFDDLLKSFSTSIDDGVETSAEEKGDGMQRALMLAI 266

Query: 300 FLAHARLIS--NTTGFAPILLLDEISAHLDEDKRNAL---FRIVTDIGSQIFMTGTDKSV 354
             A+A         G + +  +DE   HL    +  L      ++    Q+F+  T  SV
Sbjct: 267 IQAYADYRKQNEDVGKSFLFFIDEAELHLHPTAQRKLKNVLHALSQETDQVFI-NTHSSV 325

Query: 355 F 355
           F
Sbjct: 326 F 326


>gi|327200677|pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
           Amp-Pnp
 gi|327200678|pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
           Amp-Pnp
          Length = 359

 Score = 79.9 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 56/395 (14%), Positives = 142/395 (35%), Gaps = 73/395 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62
           +K++ + +  FR+++   + F     + +G NG GK+++L+AI  +      R       
Sbjct: 1   MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI-LVGLYWPLRIKDIKKD 59

Query: 63  DVTRIGS-PSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDVV---------- 109
           + T++G+  ++       +G +            + +  +++ L  N+            
Sbjct: 60  EFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAI 119

Query: 110 ---IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP--RHRRRMIDFER 164
              +  +   N  L   ++              R + + R V  +D      +++ + ++
Sbjct: 120 SAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVV-REVLNLDKFETAYKKLSELKK 178

Query: 165 LMRGR------NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
            +  R      +  + +      +   +  ++ +      +AR   ++ +  L  E   +
Sbjct: 179 TINNRIKEYGGSGGIKDLEKAKDFTEELIEKVKKYKA---LAREAALSKIGELASEIFAE 235

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                       F +GK+ +     +E                       ++  L V + 
Sbjct: 236 ------------FTEGKYSEVVVRAEE-----------------------NKVRLFVVWE 260

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            K   +   S GE+  + +   LA +  ++   G   +L+LDE + +LDE++R  L  I+
Sbjct: 261 GKERPLTFLSGGERIALGLAFRLAMSLYLA---GEISLLILDEPTPYLDEERRRKLITIM 317

Query: 339 T---DIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
                   Q+ +   D+ + D+  +    + + N 
Sbjct: 318 ERYLKKIPQVILVSHDEELKDA-ADHVIRISLENG 351


>gi|331698518|ref|YP_004334757.1| chromosome segregation protein SMC [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953207|gb|AEA26904.1| chromosome segregation protein SMC [Pseudonocardia dioxanivorans
           CB1190]
          Length = 1186

 Score = 79.9 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 103/274 (37%), Gaps = 29/274 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++AIS++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRLEPGITCVVGPNGSGKSNVVDAISWVLGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSGRAPLGRAEVTLTIDNSDGALPIEYSEVSITRRMFRDGAGEYEINGDRAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +      +RR +++     +  R        E
Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGQLDGVLQSKPEDRRAYIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENFP 222
           + +R  + +       +   + +  Q+  LG +     R + + +        +  ++  
Sbjct: 176 KALRKLDAMQANLTRLTDLTAELRRQLKPLGRQAEIARRAQAVQSELRDARLRLAADDLV 235

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            ++ +L    +   +Q+  A + E  ++L   R+
Sbjct: 236 ALRDALA--REEADEQAARARRAEVEEELRVARE 267


>gi|323140853|ref|ZP_08075766.1| RecF/RecN/SMC N-terminal domain protein [Phascolarctobacterium
          sp. YIT 12067]
 gi|322414591|gb|EFY05397.1| RecF/RecN/SMC N-terminal domain protein [Phascolarctobacterium
          sp. YIT 12067]
          Length = 438

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 8/95 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF----RR 58
          ++I+ L +  FR Y  L + F+ + T+ VG+NG GKT I +A++       R F    R+
Sbjct: 1  MQIERLRLKNFRCYDELDIAFEPKLTVIVGENGKGKTAIFDALAIALEPYLRSFDASGRQ 60

Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE 93
           +  DV R+  P +      ++GME    + IKLE
Sbjct: 61 ITPQDVRRV--PVYKKDMRHIDGMECHYPVEIKLE 93


>gi|46205999|ref|ZP_00047825.2| COG1196: Chromosome segregation ATPases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 191

 Score = 79.6 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 71/184 (38%), Gaps = 26/184 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKTLTLRGFKSFASATTLSFEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRS-VRCLQINDVVIR 111
             DV   G+              ++  +G   I    + +     RS      IN    R
Sbjct: 61  MEDVIFAGTSGRPPLGRAEVSLTIDNTDGALPIDYTEVTISRTLFRSGGSEYAINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D +      +RR F++     +  R        E
Sbjct: 121 LLDIQDLLSDSGLGREMHVIVGQGQLDAVLRATPEDRRGFVEEAAGVLKHR-----KRKE 175

Query: 164 RLMR 167
           + +R
Sbjct: 176 KALR 179


>gi|329936734|ref|ZP_08286441.1| chromosome associated protein [Streptomyces griseoaurantiacus M045]
 gi|329303964|gb|EGG47847.1| chromosome associated protein [Streptomyces griseoaurantiacus M045]
          Length = 1189

 Score = 79.6 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 95/290 (32%), Gaps = 43/290 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA----------RVEMINALSSLIM 213
           + +R  + +             +  Q+  LG +  +A          R   +  L+  ++
Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
              +  +            +    +     +    + L     ++   RR
Sbjct: 236 RLREALDAEIAD-------EAALKERKETAESALREALRHEAALEEEVRR 278


>gi|256397108|ref|YP_003118672.1| chromosome segregation protein SMC [Catenulispora acidiphila DSM
           44928]
 gi|256363334|gb|ACU76831.1| chromosome segregation protein SMC [Catenulispora acidiphila DSM
           44928]
          Length = 1224

 Score = 79.2 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 109/293 (37%), Gaps = 31/293 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGF 56
           M+  + +K L +  F+++AS   L  +   T  VG NG GK+N+++A++++      +  
Sbjct: 1   MSPHVYLKTLTLRGFKSFASATTLRLEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKSL 60

Query: 57  RRASYADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQIND 107
           R     DV   G+        A V      +D ++ ++  +                IN 
Sbjct: 61  RGGKMEDVIFAGTTGRAPLGRAEVALTIDNSDGALPIDYSEVTISRIMFRNGGSEYAING 120

Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
              R++D         + + + +      +D +      +RR F++     +  R     
Sbjct: 121 DPCRLLDIQELLSDSGIGREMHVILGQGRLDAVLQAGPEDRRSFIEEAAGVLKHR----- 175

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
              E+ +R  + +       +     +  Q+  LG +  +AR  ++  + S + +   + 
Sbjct: 176 KRKEKALRKLDAMQANLTRLTDLTGELRRQLKPLGRQAEVARRAVV--IQSDLRDARLRL 233

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF---DGRKMDSMSRRTLIGPH 269
               +      F     D+    ++ +  ++L+     ++ +   R   + P+
Sbjct: 234 LADDLVGMRQAFEQEAADEEQMKVRRKQLERLYAEAQAQESELEQRGAALVPY 286


>gi|315604348|ref|ZP_07879414.1| SMC structural maintenance of chromosomes partitioning protein
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315314054|gb|EFU62105.1| SMC structural maintenance of chromosomes partitioning protein
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 1194

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/279 (18%), Positives = 103/279 (36%), Gaps = 41/279 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L      T  VG NG GK+N+++A++++      R  R   
Sbjct: 1   MYLKNLTLRGFKSFASATTLALQPGITCVVGPNGSGKSNVVDALAWVMGEQGARALRGGQ 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
            ADV   G+    +   A+V+      D  + +E  +    R L         IN   +R
Sbjct: 61  MADVIFAGTSGRAALGRAQVDLTIDNTDGLLDIEYSEVTISRTLFRGGGSEYSINGTPVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I S    ERR F++     +  R        E
Sbjct: 121 LLDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIE------AQMAELGVKINIARVE-MINALSSLIMEYV 216
           R ++           D++    ++       Q+  L     +AR   +I A        +
Sbjct: 176 RALK------KLADMDANLVRVLDLTNEIHRQLGPLARAARLARRASLIQARVRDAKARL 229

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
             ++    +  L        D+   AL+    +++   R
Sbjct: 230 LADDLASARAKLAAL--QASDEETTALRASLEERIAASR 266


>gi|302541733|ref|ZP_07294075.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302459351|gb|EFL22444.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
           53653]
          Length = 536

 Score = 78.8 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 70/367 (19%), Positives = 122/367 (33%), Gaps = 47/367 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYADVT 65
           +  + I  +R +    L FD +  I VGDN  GK+ ILEAI     G+  R R  Y D++
Sbjct: 2   LSKIVIHNYRTFREFELDFDPEMNILVGDNDAGKSTILEAIELGLTGK-LRGRPLYQDLS 60

Query: 66  --RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  +     A +     +    I ++   D +     +      +  +        
Sbjct: 61  PYLFHQDAVSEWIADLREGRAVPPPEIIIDLFLDSTPEAATLRGNNNLLKADEPGVRIRV 120

Query: 124 WLVPSMD----RIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            L P  +             R        +D + F  +    R +     L+   N  L 
Sbjct: 121 ALNPDYEAEYKEFIKKPDEVRLIPTEYYKVDWLAFDGNGVTFRSIPASASLIDAANIHLQ 180

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
            G  D      I++++          RV++  A  SL   + Q E+   I   L G  + 
Sbjct: 181 SG-VDYYMKHIIDSRLKA------DERVKLTRAYRSLRETFAQDESIVKINGDLRGTSND 233

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
             D+      +   K  ++            I PH  DL   +  K         GEQ  
Sbjct: 234 VSDRELTLNIDVSQKSSWES----------GIVPHLDDLPFQFVGK---------GEQST 274

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDK 352
           + + +       ++     A I+L++E   HL       L + ++      Q+F+T    
Sbjct: 275 LKILL------ALNKKVDDAHIVLVEEPENHLSFPNLGKLVKKISKKCEDQQVFITTHSS 328

Query: 353 SVFDSLN 359
            V + L 
Sbjct: 329 FVLNKLG 335


>gi|297559198|ref|YP_003678172.1| chromosome segregation protein SMC [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843646|gb|ADH65666.1| chromosome segregation protein SMC [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 1181

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 101/276 (36%), Gaps = 29/276 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MYLKNLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS-IKLETRD---DRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I   ++  R            IN    R
Sbjct: 61  MEDVIFAGTSTRQALGRAEVSLTIDNTDGALPIDYTEVTIRRTMFRNGGSEYAINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +      ERR  ++     +  R        E
Sbjct: 121 LLDIQDLLSDSGIGREMHVIVGQGQLDTVLHAGPEERRALIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R  N +       +   + +  Q+  LG +  +AR   +  + + + +   +     
Sbjct: 176 KAIRKLNAMQGNLDRVTDLTAELRRQLKPLGRQAELARRAAV--IQADLRDARLRLLADD 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
           I ++LTG L  +       L    A +    +  + 
Sbjct: 234 I-VTLTGQLAKEEADEKEVLARRGAAEAALTQTQER 268


>gi|326443710|ref|ZP_08218444.1| chromosome segregation protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 1376

 Score = 78.4 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 101/317 (31%), Gaps = 50/317 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKAMTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMIN---- 206
           + +R    +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLESMKANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 207 ALSSLIMEYVQKE-------NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            L   +   +  E            +L      + + +    AL     +      ++  
Sbjct: 236 RLQRALRAEIADEAALKARKEAAEARLKAALAREAELEGEVRALVPRLQRAQQTWYELSQ 295

Query: 260 MSRRTLIGPHRSDLIVD 276
           ++ RT      ++  V 
Sbjct: 296 LAERTRGTVSLAEARVK 312


>gi|289768859|ref|ZP_06528237.1| chromosome segregation protein SMC [Streptomyces lividans TK24]
 gi|289699058|gb|EFD66487.1| chromosome segregation protein SMC [Streptomyces lividans TK24]
          Length = 1197

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 100/296 (33%), Gaps = 49/296 (16%)

Query: 2   TNRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFR 57
           ++ + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R
Sbjct: 9   SDGVHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLR 68

Query: 58  RASYADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDV 108
                DV   G+              ++  +G   I                   QIN  
Sbjct: 69  GGKMEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGD 128

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             R++D         + + + +      +D +     M RR F++     +  R      
Sbjct: 129 TCRLLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----K 183

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINA 207
             E+ +R  + +             +  Q+  LG               +  AR+ ++  
Sbjct: 184 RKEKALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLAD 243

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
               + E +Q E      L           +   A ++E  K L     ++   RR
Sbjct: 244 DLVRMREALQAEVADEAAL----------KERKEAAEQELGKALRREADLEDEVRR 289


>gi|239944604|ref|ZP_04696541.1| putative chromosome segregation protein [Streptomyces roseosporus
           NRRL 15998]
 gi|291448067|ref|ZP_06587457.1| chromosome segregation protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351014|gb|EFE77918.1| chromosome segregation protein [Streptomyces roseosporus NRRL
           15998]
          Length = 1240

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 107/324 (33%), Gaps = 50/324 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMI----- 205
           + +R  + +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLDAMGANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 206 ---NALSSLI---MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
              +AL   I    E  ++++    +L      + + +     L     +      ++  
Sbjct: 236 TLRDALRDEIADEAELKKRKDVAEAELKTALLREAELEGEVRRLAPRLQRAQQTWYELSQ 295

Query: 260 MSRRTLIGPHRSDLIVDYCDKAIT 283
           ++ R       +D  V    +A  
Sbjct: 296 LAERVRGTISLADARVRSASQAPA 319


>gi|167042367|gb|ABZ07095.1| putative RecF/RecN/SMC N terminal domain protein [uncultured marine
           crenarchaeote HF4000_ANIW97M7]
          Length = 686

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 113/284 (39%), Gaps = 35/284 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F ++    L FD   T+F+G+NG GK++I+EAI+F   G+  R A   DV R
Sbjct: 2   ITSVKLHNFLSHKDTELSFDNGVTVFIGENGAGKSSIIEAITFALFGKTTRGAI-EDVIR 60

Query: 67  IGSPSFFS-TFARVEGMEGLADISI-----KLETRDDRSVRCLQINDVVIRVVDELNKH- 119
            G     +  +  V G +  A   I       E  DD S+   +  + V   + ++    
Sbjct: 61  DGETQAVTQIYFEVNGKKYQAIKKIHGSTSPQELLDDNSLPIAKGKEKVSEEIKKIIGLD 120

Query: 120 ---LRISWLVP--SMDRIFSGLSMER-RRFLDRMV-----FAIDPRHRRRMIDFERLMRG 168
              L I+ +VP   +  I    +  + R  +D+++      A +      +  F   +  
Sbjct: 121 YDTLGIASIVPQGQLTEIIQSDNGIKLRSLIDKVIGTGKYSAAEKGLGEGITAFREYLTE 180

Query: 169 RNRLLTEGYFDSSWCSSIEAQM-AELGVKINIA---RVEMINALSSLIMEYVQKENFPHI 224
           +        ++++       QM      KI      + E +  ++    E ++K      
Sbjct: 181 K--------YNNTDEDVENVQMEINHAEKIIANSKPQKEKLEEMAESFKEKIKKLQEKKE 232

Query: 225 KLSLTG----FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
           +LS+       L  K D  + ++K+E +  + D  +   + +R 
Sbjct: 233 ELSVNYEKIIHLKDKEDNVWKSIKQEISSLVTDNEEHSKIIQRC 276



 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 53/129 (41%), Gaps = 16/129 (12%)

Query: 238 QSFCALKEEYAKKLF-DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           +S      +Y ++L  + + ++     T I      +  +  +    + + S GEQ  V 
Sbjct: 544 ESISRNASQYLEQLKTEIKYLELFQDGTSI-----KIQCNTNNGQRPVKNLSGGEQVCVA 598

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--------GSQIFMT 348
           + + L  + L+  ++    I++LDE +A+LD+         +  +          Q  + 
Sbjct: 599 LAVRLGMSDLMIKSSLK--IMVLDEPTAYLDKTHCEYFVDAIQQLTNFMNEKQNFQFIII 656

Query: 349 GTDKSVFDS 357
             D+ +++S
Sbjct: 657 THDEDIWES 665


>gi|326776319|ref|ZP_08235584.1| chromosome segregation protein SMC [Streptomyces cf. griseus
           XylebKG-1]
 gi|326656652|gb|EGE41498.1| chromosome segregation protein SMC [Streptomyces cf. griseus
           XylebKG-1]
          Length = 1235

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 98/293 (33%), Gaps = 49/293 (16%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210
           + +R  + +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLDAMGANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
            + + ++ E     +L           +   A + E    L    +++   RR
Sbjct: 236 TLRDALRDEIADEAEL----------KKRKDAAEAELRTALAREAELEGEVRR 278


>gi|86742278|ref|YP_482678.1| chromosome segregation protein SMC [Frankia sp. CcI3]
 gi|86569140|gb|ABD12949.1| condensin subunit Smc [Frankia sp. CcI3]
          Length = 1222

 Score = 78.0 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 97/254 (38%), Gaps = 27/254 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++AI+++      +  R  +
Sbjct: 1   MHLKNLTLRGFKSFASSTSLHLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGT 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
            +DV   G+P+            ++  +G   I     T      R       IN    R
Sbjct: 61  MSDVIFAGTPARPALGRAEVLLTIDNSDGALPIEYTEVTIGRLMFRSGESEYTINGTGCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + L +      +D +      +RR F++     +  R        E
Sbjct: 121 LLDIQELMSDSGIGRELHVIVGQGQLDAVLHARPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE-MINALSSLIMEYVQKENFP 222
           + +R    +       +   + +  Q+  LG +  IAR   +I A        +  ++  
Sbjct: 176 KALRKLEAMSANLTRLTDLSAELRRQLGPLGRQAEIARKAGVIQASLRDARLRLLADDLH 235

Query: 223 HIKLSLTGFLDGKF 236
             ++++T  L  + 
Sbjct: 236 RAQVAITSDLADEE 249


>gi|257055009|ref|YP_003132841.1| condensin subunit Smc [Saccharomonospora viridis DSM 43017]
 gi|256584881|gb|ACU96014.1| condensin subunit Smc [Saccharomonospora viridis DSM 43017]
          Length = 1199

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 96/270 (35%), Gaps = 32/270 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+L+A+ ++   +G    R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVLDALRWVMGTQGAKDLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSGRAPLGRAEVTLTIDNSDGALPIEYTEVSITRRMFRDGASEYEINGNACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      ERR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLSEILQAKPEERRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEMI--NALSSLIMEYVQKE 219
           + +  R     +G  D      + +  Q+  LG +  IAR   +    L    +     +
Sbjct: 176 KAL--RKLTAMQGNLDRLNDLTTELRRQLKPLGKQAEIARRAQVIQAELRDAKLRLYADD 233

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
                K       D K  ++  A  E+  +
Sbjct: 234 LVTQRKAIEKDEADEKAARARRAEVEQMLE 263


>gi|325067015|ref|ZP_08125688.1| chromosome segregation protein SMC [Actinomyces oris K20]
          Length = 194

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 26/184 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L I  F+++AS   L  +   T  VG NG GK+N+++A++++      +  R  S
Sbjct: 1   MHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGAKNLRGGS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
            ADV   G+ S            ++  +G   I    + +            +IN    R
Sbjct: 61  MADVIFAGAGSRPALGRAEVSLTIDNTDGALPIDYTEVTISRTLFRGGGSEYRINGSPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D + S    +RR F++     +  R        E
Sbjct: 121 LLDVQELLSDTGLGRQMHVIVGQGQLDAVLSATPEDRRGFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMR 167
           R +R
Sbjct: 176 RALR 179


>gi|184200699|ref|YP_001854906.1| chromosome partition protein SMC [Kocuria rhizophila DC2201]
 gi|183580929|dbj|BAG29400.1| chromosome partition protein SMC [Kocuria rhizophila DC2201]
          Length = 1214

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 104/281 (37%), Gaps = 40/281 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS     F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKTLTVRGFKSFASATTFHFEPGVTAVVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +  +   A V      AD ++ +E  +    R L         IN    R
Sbjct: 61  MEDVIFAGTSARSALGRAHVSLTIDNADGALPIEYSEVTISRTLFRSGGSEYAINGRSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +DRI      +RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGLGREMHVIVGQGQLDRILQATPEDRRGFIEEASGILKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R    + T           IE Q+  LG +   AR      +   + +   +     
Sbjct: 176 KTLRKLESVQTNLDRLEDLTGEIERQLTPLGRQARTARKA--QRIQYDVRDARARLLADD 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
           + ++    +D   + S  A            R+ D + + T
Sbjct: 234 V-VAARAGMDTDQEASAGA-----------RRRRDELEKTT 262


>gi|328885319|emb|CCA58558.1| Chromosome partition protein smc [Streptomyces venezuelae ATCC
           10712]
          Length = 1193

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/271 (18%), Positives = 99/271 (36%), Gaps = 33/271 (12%)

Query: 2   TNRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFR 57
              + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R
Sbjct: 9   VPGVHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLR 68

Query: 58  RASYADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDV 108
                DV   G+              ++  +G   I    + L     R      QIN  
Sbjct: 69  GGKMEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIDYAEVTLTRIMFRGGSSEYQINGD 128

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             R++D         + + + +      +D +     M RR F++     +  R      
Sbjct: 129 TCRLLDFQDLLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----K 183

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI-------NALSSLIM 213
             E+ +R  + +             +  Q+  LG +  +AR  ++         L  L  
Sbjct: 184 RKEKALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAVVIQADLRDARLRLLAD 243

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + VQ  +    +++    L  + + +   L+
Sbjct: 244 DLVQLRSALTAEVADEAALLARKEATEEELR 274


>gi|291333914|gb|ADD93594.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 160

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 1/118 (0%)

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           ++    +E++  +L +  + DS  + + +GPHR DL+ D  +   +    S GEQK++++
Sbjct: 32  ENLWLEEEDFKNELREVYQKDSEVKFSTVGPHRLDLLYDINNVK-SGDILSRGEQKLLIL 90

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
              L   + + N      I L+D++ + LDE+       ++ D   Q F++  D    
Sbjct: 91  LTILGFNQHMHNLGNKHSIFLVDDLPSELDEENFLKCLELILDAPGQKFVSSIDPDFL 148


>gi|282861359|ref|ZP_06270424.1| chromosome segregation protein SMC [Streptomyces sp. ACTE]
 gi|282564017|gb|EFB69554.1| chromosome segregation protein SMC [Streptomyces sp. ACTE]
          Length = 1259

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 96/294 (32%), Gaps = 39/294 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +       RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGRLDSVLHADPTGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210
           + +R    +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLEAMGANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
            + E ++ E      L           ++  A + +   ++         +++T
Sbjct: 236 RLREALRSEIADEAALKRRREAAEADLKAALAREADLEDEVRRLAPRLQRAQQT 289


>gi|182435694|ref|YP_001823413.1| putative chromosome segregation protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178464210|dbj|BAG18730.1| putative chromosome segregation protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 1235

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 101/283 (35%), Gaps = 29/283 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK-INIARVEMINALSSLIMEYVQKENFP 222
           + +R  + +             +  Q+  LG +     R  +I A        +  ++  
Sbjct: 176 KALRKLDAMGANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 223 HIKLSLTGFL--DGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
            ++++L   +  + +  +   A + E    L    +++   RR
Sbjct: 236 TLRVALRDEIADEAELKKRKDAAEAELRTALAREAELEGEVRR 278


>gi|163840517|ref|YP_001624922.1| chromosome segregation protein [Renibacterium salmoninarum ATCC
           33209]
 gi|162953993|gb|ABY23508.1| chromosome segregation protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 1204

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 97/275 (35%), Gaps = 29/275 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS     F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLRGFKSFASATTFDFEPGVTAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+              ++  +G+  I    + +             IN    R
Sbjct: 61  MEDVIFAGTSGRPPLGRAQVSLTIDNADGVLPIDYSEVTISRTLFRTGGSEYAINGESAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D++      +RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGLGREMHVIVGQGQLDKVLHATPEDRRGFIEEAAGILKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS-SLIMEYVQKENFP 222
           + +R    +           S I  Q+  LG +  +AR               +  ++  
Sbjct: 176 KTLRKLEAMQANLTRLGDLTSEIRRQLTPLGKQAEVARRAQSVQFEVRDARARLLADDLV 235

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            ++ SL    +   + +  A + E    L  GR  
Sbjct: 236 ELRGSLEQ--EVADETALKARRAEVEAALEIGRLR 268


>gi|307329840|ref|ZP_07608995.1| SMC domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306884569|gb|EFN15600.1| SMC domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 581

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 99/294 (33%), Gaps = 43/294 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   Q+N    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNADGALPIDYAEVTITRIMFRNGGSEYQLNGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +       RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDGVLHADPTGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210
           + +R  + +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 211 LIMEYVQKENFPHIKL---SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            + E ++ E     +L         + +  Q   A  EE  ++L   R  D+  
Sbjct: 236 TLREALRAEIADEAELKRRKEAAEAELRTAQRREAALEEQVRQLAP-RLRDAQQ 288


>gi|320008307|gb|ADW03157.1| chromosome segregation protein SMC [Streptomyces flavogriseus ATCC
           33331]
          Length = 1252

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 94/280 (33%), Gaps = 45/280 (16%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +       RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGRLDSVLHADPTGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210
           + +R    +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLEAMGANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            + E +++E      L        + + +   LK   A++
Sbjct: 236 RLREALREEIADEAALK------QRREATESELKAALARE 269


>gi|196250345|ref|ZP_03149038.1| SMC domain protein [Geobacillus sp. G11MC16]
 gi|196210234|gb|EDY05000.1| SMC domain protein [Geobacillus sp. G11MC16]
          Length = 629

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 126/372 (33%), Gaps = 49/372 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRA 59
           + +  L I  FR +     +  +   T+ +G+NG GK+ I++AI  +      G+     
Sbjct: 1   MHLSKLVIEGFRCFNEKAEIPLNKGLTVILGENGSGKSAIVDAIRLILNDDEFGKSMVSE 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVDELNK 118
                       F+ +F      E      I +E    + V  +  +  +    +   + 
Sbjct: 61  RD----------FWHSFGE-SKNESSTSFRIDIEFSKLKPVEQVAYLPWLKTEDLSTASL 109

Query: 119 HLRISWLVPSMDRIFS---GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           HL++               G +     F      +I   +   + D E  +R        
Sbjct: 110 HLKVQNKTNQNKHYKKELWGGNSSSSSFEWDTYKSIQCTYLPPLRDAEHRLR-------- 161

Query: 176 GYFDSSWCSSIEAQMAELGVKI---NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                       +++A L  KI   N A+  ++  +     + ++ E     K ++   L
Sbjct: 162 --------DVRGSRLARLITKIEPENSAKERLVETVKQNNQQLLKDELIVKAKTNIKSRL 213

Query: 233 DGKFDQSFCALKEEYAKKLFDGR-KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
               +     L ++ +    D R +    + + L  P   D      D+   ++  S G 
Sbjct: 214 ---VETLGEKLAQDISISFSDTRFERIIENLKLLFYPFLDDS--TSIDEFRELSENSLGY 268

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD----IGSQIFM 347
             ++ +   LA    ++       ILL++E  AHL    +  L   +       G Q+ +
Sbjct: 269 NNLIYLATVLAELEDVNEQEISCKILLIEEPEAHLHPQLQTKLLEYIEKQAKLKGVQVIV 328

Query: 348 TGTDKSVFDSLN 359
           T    ++  S++
Sbjct: 329 TTHSPTIAASID 340


>gi|154508959|ref|ZP_02044601.1| hypothetical protein ACTODO_01475 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798593|gb|EDN81013.1| hypothetical protein ACTODO_01475 [Actinomyces odontolyticus ATCC
           17982]
          Length = 1191

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 80/204 (39%), Gaps = 32/204 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++A++++      R  R   
Sbjct: 1   MYLKNLTLRGFKSFASATTLALEPGITCVVGPNGSGKSNVVDALAWVMGEQGARALRGGQ 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
            ADV   G+    +   A+V+      D  + +E  +    R L         IN    R
Sbjct: 61  MADVIFAGTSGRAALGRAQVDLTIDNTDGLLDIEYSEVTISRTLFRGGGSEYSINGTPAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I S    ERR F++     +  R        E
Sbjct: 121 LLDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEPAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIE 187
           R ++           D++    ++
Sbjct: 176 RALK------KLADMDANLVRVLD 193


>gi|293192415|ref|ZP_06609526.1| putative RecF/RecN/SMC N domain protein [Actinomyces odontolyticus
           F0309]
 gi|292820330|gb|EFF79324.1| putative RecF/RecN/SMC N domain protein [Actinomyces odontolyticus
           F0309]
          Length = 476

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 32/204 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   LV     T  VG NG GK+N+++A++++      R  R   
Sbjct: 1   MYLKNLTLRGFKSFASATTLVLQPGITCVVGPNGSGKSNVVDALAWVMGEQGARALRGGQ 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
            ADV   G+    +   A+V+      D  + +E  +    R L         IN    R
Sbjct: 61  MADVIFAGTSGRAALGRAQVDLTIDNTDGLLDIEYSEVTISRTLFRGGGSEYSINGTPAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I S    ERR F++     +  R        E
Sbjct: 121 LLDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIE 187
           R ++           D++    ++
Sbjct: 176 RALK------KLADMDANLVRVLD 193


>gi|298375964|ref|ZP_06985920.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298267001|gb|EFI08658.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 573

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 75/382 (19%), Positives = 135/382 (35%), Gaps = 67/382 (17%)

Query: 5   IKIKFLNISE-FRNYASLRLVFDA--QHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRAS 60
           +K+  L I+  FRN   L L FD+     + +G+NG GKTNILEA+ S  S         
Sbjct: 1   MKLLALKITSEFRNLEGLNLRFDSTNDTYVIIGNNGTGKTNILEALSSVFSTLLSH---- 56

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
                   S  F  +F        + DI+ +++     S    + NDVV+   D      
Sbjct: 57  --------STDFIFSFVL---RYEINDITYRVKHDKATSTTEYKKNDVVVTDAD------ 99

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                +   +RI    S E  R  D      +  +   +            +L+  Y D 
Sbjct: 100 -----MNYPNRIVCNYSGEDTRMWDNYYKKANEEYLESVRT-----AEAPNVLSMIYIDR 149

Query: 181 SWCSSIEAQMAELGVK-INIARVEMINALSSLIMEYVQKENFPHIKLSL-TGFLDGKFDQ 238
           +    I   +  L  + +NIA  E +          +   N   I L   T  L     +
Sbjct: 150 TMWKYI--LLCMLATRDVNIAFDEFLQE-----KLGIASGNLDSIDLIFNTAKLSKWRRE 202

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC----------------DKAI 282
           +   L     + LF      S +  +   P+  D  + +                 +  I
Sbjct: 203 NQITLFIRQLRALFGDSPSISSNDISKFNPNDDDARLLFNKYMGASQVIDTLNISFNGGI 262

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
             A  S GE+K++++        ++   +    ++L+DE  +H+   +++ L  +   + 
Sbjct: 263 ESAFLSEGEKKMMVI------LFILEAISDEQTLVLMDEPDSHIHISRKSELREMFDHMS 316

Query: 343 SQI-FMTGTDKSVFDSLNETAK 363
            +   +T    ++  S  E  K
Sbjct: 317 HRSNIITSHSPTLTASFEEKTK 338


>gi|327200673|pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
           Complex With Amp- Pnp
 gi|327200674|pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
           Complex With Amp- Pnp
 gi|327200675|pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
           Complex With Amp- Pnp
 gi|327200676|pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
           Complex With Amp- Pnp
          Length = 339

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 132/375 (35%), Gaps = 53/375 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K++ + +  FR+++   + F     + +G NG GK+++L+AI  +      R       
Sbjct: 1   MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI-LVGLYWPLR-IKD--- 55

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN--DVVIRVVDELNKHLRI 122
            +         F +V   +   D+  + +    R  R          I  +  L  +   
Sbjct: 56  IKKDE------FTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWK 109

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR--GRNRLLTEGYFDS 180
               PS   I    S    + +   +F ++  + R+    + ++        +     + 
Sbjct: 110 HVTEPSSKAI----SAFMEKLIPYNIF-LNAIYIRQ-GQIDAILESDEAREKVVREVLNL 163

Query: 181 SWCSSIEAQMAEL--GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
               +   +++EL  G       +E +    +L  E    +           F +GK+ +
Sbjct: 164 DKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSE 223

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                +E                       ++  L V +  K   +   S GE+  + + 
Sbjct: 224 VVVRAEE-----------------------NKVRLFVVWEGKERPLTFLSGGERIALGLA 260

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---DIGSQIFMTGTDKSVF 355
             LA +  ++   G   +L+LDE + +LDE++R  L  I+        Q+ +   D+ + 
Sbjct: 261 FRLAMSLYLA---GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELK 317

Query: 356 DSLNETAKFMRISNH 370
           D+  +    + + N 
Sbjct: 318 DA-ADHVIRISLENG 331


>gi|84498328|ref|ZP_00997125.1| putative chromosome associated protein [Janibacter sp. HTCC2649]
 gi|84381828|gb|EAP97711.1| putative chromosome associated protein [Janibacter sp. HTCC2649]
          Length = 1188

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 94/275 (34%), Gaps = 29/275 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   +  +   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYVKSLTLKGFKSFASATTMRLEPGITCIVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I         T          IN    R
Sbjct: 61  MEDVIFAGTAGRPPLGRAEVSLTIDNTDGALPIDYAEVTITRTMFRNGGSEYAINGTPSR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDAVLRATPEERRGFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R  + +             I  Q+  LG +   AR   +  + +   +  Q+     
Sbjct: 176 RALRKLDAMEANLTRVHDLTGEIRRQLGPLGRQAEAARKAAV--IQAEARDARQRLLADD 233

Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           + +L+ T   +   + +    +      L   R  
Sbjct: 234 LVQLTSTLEQEVADETALIERRTTVENALESYRSR 268


>gi|260907265|ref|ZP_05915587.1| chromosome partition protein SMC [Brevibacterium linens BL2]
          Length = 1199

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 102/281 (36%), Gaps = 28/281 (9%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKNLRGGK 60

Query: 61  YADVT-----RIGSPSFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV      +  +         ++  +G   +    + +             +N    R
Sbjct: 61  MDDVIFAGTSKRQALGRAEVTLTIDNTDGAIPVDYTEVTISRTLFRTGGSEYAVNGTPAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L K + +      +D I     +ERR F++     +  R        +
Sbjct: 121 LLDIQELLNDSGLGKEMHVIVGQGRLDAILHADPIERRSFIEEAAGVLKHR-----RRKD 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIMEYVQKENFP 222
           + +R    L T     S   + +  Q+  LG +   A+    + A        +  ++  
Sbjct: 176 KAVRKLTGLQTNLDRLSDLRTELNRQLGPLGRQAEAAQKAATVQATLRDSTARLLADDTV 235

Query: 223 HIKLSLTGFLDGKFDQSFCALKE-EYAKKLFDGRKMDSMSR 262
            ++ SL        +     + + E+ +   + R  +  SR
Sbjct: 236 RLQSSLASTASAGGEDGGDRISDLEHRRSRTEERLQEIESR 276


>gi|16081317|ref|NP_393635.1| chromosome segregation protein [Thermoplasma acidophilum DSM 1728]
 gi|18202976|sp|Q9HLR8|RAD50_THEAC RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|10639302|emb|CAC11304.1| myosin heavy chain (mhcA) related protein [Thermoplasma
           acidophilum]
          Length = 896

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 110/306 (35%), Gaps = 33/306 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  F ++    + FD    I VG NG GK++I++AI F   G   R     D+
Sbjct: 1   MIIDRIRLINFLSHEDSEIFFDTGVNIIVGHNGAGKSSIIDAIRFALFGDK-RTKKIEDM 59

Query: 65  TRIGSPSFFSTFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVV---------D 114
            R G+ S         G    +   SI   +++  S   + ++   +             
Sbjct: 60  IRKGAKSLEVEMEFRHGGHTYIIRRSITRRSKNPESNAMIMVDGSALSQSVKDANDYIEK 119

Query: 115 ELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-----FE 163
            +    +  +L         MD + SG    R++ LD ++          ++       +
Sbjct: 120 NIITKSKDVFLNSVFSKQGEMDDLISGDPARRKKLLDEILEIEKLEETYDVLKDVIDSLQ 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +   + L++E   D       +  +AEL  +I+        A+ S ++   ++ +  +
Sbjct: 180 AGISNLDYLISENERDRDDLRRYQDDVAELSKQIDQE-----EAIESDLLRKKEEASAEY 234

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
             +S    +     ++  +L +E  +   + RK+D   +       R      Y +   +
Sbjct: 235 NAVSKELIMLDATLKNMMSLSDEANRYEEEIRKIDGKLQEISGSTER------YNEITSS 288

Query: 284 IAHGST 289
             + S 
Sbjct: 289 KVYASR 294



 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 89/231 (38%), Gaps = 28/231 (12%)

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           + +N L  +     +    +E Q+      ++  R + +  L S + E  Q+ +     +
Sbjct: 668 KRKNELSVKASESETRLKYVEGQIQATLSSLSGKRSK-VETLRSHVSEIEQRISDRERDI 726

Query: 227 SLTGFLDGKFDQSFCALKEEYAK----KLFDGRKMDSMSRRTLIGPHRSDLIVDYC---- 278
                ++   +     ++E + K     +      D ++ +T       DL  D      
Sbjct: 727 ERMKKIEKAIN-DVKRIREAFGKNGVPAMIRQSVSDYLTAKTRDYLSSFDLDFDDISVDQ 785

Query: 279 DKAITIAHG---------STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           D  +T+  G         S GE+  V   I +A A+ ++       +L+LDE +A LDE+
Sbjct: 786 DFNVTVYRGGVPEGIDSLSGGEKTAVAFAIRVAVAQFLNADL---SLLILDEPTAFLDEE 842

Query: 330 KRNALFRIV------TDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
           +RN+L  I+      + +  Q+ +    + +  S N   +  +I     + 
Sbjct: 843 RRNSLSDIIEYTLKDSSVIPQVIIISHHRELLASANVAIEVKKIGGRSVVS 893


>gi|290957114|ref|YP_003488296.1| chromosome associated protein [Streptomyces scabiei 87.22]
 gi|260646640|emb|CBG69737.1| putative chromosome associated protein [Streptomyces scabiei 87.22]
          Length = 1207

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 97/279 (34%), Gaps = 29/279 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYSEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQDLLSDSGIGREMHVIVGQGRLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R  + +             +  Q+  LG +  +AR      + + + +   +     
Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRA--AVIQADLRDARLRLLADD 233

Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           + +L      +   + +    KE    +L    + ++  
Sbjct: 234 LVRLRAALRTEVADEAALKQRKEAAETELKKALQREAHL 272


>gi|254383295|ref|ZP_04998648.1| chromosome segregation protein [Streptomyces sp. Mg1]
 gi|194342193|gb|EDX23159.1| chromosome segregation protein [Streptomyces sp. Mg1]
          Length = 648

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 77/213 (36%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G+  I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGVLPIDYAEVTITRIMFRGGSSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +R  + +             +  Q+  LG +
Sbjct: 176 KALRKLDAMRANLARVQDLTEELRRQLKPLGRQ 208


>gi|229002236|dbj|BAH57702.1| hypothetical protein [Staphylococcus aureus]
          Length = 698

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 136/393 (34%), Gaps = 64/393 (16%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--------G 55
           ++ I  + I  FRN+ ++ + F     + +G N  GK+N+L A+S +  G          
Sbjct: 11  KMYISSVKIKNFRNFDNIDIDFHEGVNVLIGHNNSGKSNLLRALSLIFDGSVRKQLSVED 70

Query: 56  FRRASYAD---------VT----------RIGSPSFFSTFARVEGMEGLADISIKLETRD 96
           F  +   +         V           R+ S    +    +  +E   +  I+ E   
Sbjct: 71  FNNSLTKESLKKEAPKIVISVHITQSENERLMSDELITVSNWLTKLEEPYEARIQYEFFL 130

Query: 97  DRSVRCLQINDVV-IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
            +      I+ V  I   +E+   +R  ++   +++I+ G    +    +  +   D + 
Sbjct: 131 PKDEEKNYIDLVKNIDEKEEIWNLIRSQFIRLYVNKIWVGNPEHQIPIDNDSLNKFDFQF 190

Query: 156 RRRMIDFER-LMRGRNRLLT---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
              + D ER +  G+N LL    + + D    S       E   K+   R E  +  S L
Sbjct: 191 LDAIRDVERDMFSGKNTLLKSVIDFFIDYDIKSDETITEEEQKEKLEERRKEFSDNSSDL 250

Query: 212 IMEYVQKENFPHIK-LSLTGFLDGKFDQSFCALKEEYAK-------KLFDGRKMDSMSRR 263
           I    ++ +  + K LS T  +   +D+S    K    +       +L    +       
Sbjct: 251 IETIHKRLDSGNQKILSYTNGIGASYDKSTPDFKGNLTESEIYTVLQLIIKHETGMTLPI 310

Query: 264 TLIGPHRSDLIVD--YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
           T  G   ++LI       K    + G                   + +     PIL ++E
Sbjct: 311 THNGLGYNNLIFMALLLSKMQADSDG-----------------NFLGSNAKVFPILAIEE 353

Query: 322 ISAHLDEDKRNALFRIVT-----DIGSQIFMTG 349
             AHL    +N   + +          QIF+T 
Sbjct: 354 PEAHLHPTMQNEFIKFLKNNIREKKVKQIFITT 386


>gi|325963726|ref|YP_004241632.1| condensin subunit Smc [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469813|gb|ADX73498.1| condensin subunit Smc [Arthrobacter phenanthrenivorans Sphe3]
          Length = 1194

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 103/274 (37%), Gaps = 29/274 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS     F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTVRGFKSFASATTFNFEPGVTAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+        A V      +D ++ +E  +    R L         IN    R
Sbjct: 61  MEDVIFAGTSGRPPLGRAHVSLTIDNSDGALPIEYSEVTISRTLFRTGGSEYAINGAGCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +DR+      +RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGLGREMHVIVGQGQLDRVLHATPEDRRGFIEEAAGILKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R    +       +     I  Q+  LG +  +AR      +   + +   +     
Sbjct: 176 RTVRKLEAMQANLQRLTDLTGEIRRQLTPLGKQAEVARRA--QRVQFDVRDARARLLADD 233

Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           + +L L    D   + +    + +  ++L  GR+
Sbjct: 234 LVQLQLALEQDVADEAALKERRTQAGQQLEAGRR 267


>gi|229821032|ref|YP_002882558.1| chromosome segregation protein SMC [Beutenbergia cavernae DSM
           12333]
 gi|229566945|gb|ACQ80796.1| chromosome segregation protein SMC [Beutenbergia cavernae DSM
           12333]
          Length = 1191

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 100/276 (36%), Gaps = 31/276 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + ++ L +  F+++AS   L  +   T  VG NG GK+N+++A++++      +  R  +
Sbjct: 1   MHLRTLTLRGFKSFASATTLHLEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGA 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
            +DV   G+ S            ++  +G   I    + +             IN    R
Sbjct: 61  MSDVIFAGTASRPPLGRAEVSLTIDNADGALPIDYAEVTISRTLFSGGGSEYAINGTACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D +      ERR F++     +  R        +
Sbjct: 121 LLDIQDLLSDSGLGREMHVIVGQGQLDAVLRATPEERRGFIEEAAGILKHR-----KRKD 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI--NALSSLIMEYVQKENF 221
           + +R    +       +   + I  Q+  L  + ++AR   +    L       +  +  
Sbjct: 176 KALRKLEAMAANLARLTDLTAEIRRQLGPLAKQADVARRARVVQADLRDSRARLLADDL- 234

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
             ++L+ T   +   + +    ++E      D R  
Sbjct: 235 --VQLTATLEQEIADETALRTARDEVEAAQADARGR 268


>gi|312194946|ref|YP_004015007.1| chromosome segregation protein SMC [Frankia sp. EuI1c]
 gi|311226282|gb|ADP79137.1| chromosome segregation protein SMC [Frankia sp. EuI1c]
          Length = 1219

 Score = 76.5 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++A++++      +  R  +
Sbjct: 1   MYLKSLTLRGFKSFASSTTLRLEPGITCVVGPNGSGKSNVVDAMAWVLGEQGAKALRGGT 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ----INDVVIR 111
            +DV   G+PS            ++  +G   I     T      R  Q    IN    R
Sbjct: 61  MSDVIFAGTPSRPALGRAEVLLTIDNSDGALPIEYSEVTVGRLMFRSGQSEYTINGTSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + L +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDIQELMSDSGIGRELHVIVGQGQLDAVLHASPEERRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R    +       +   + +  Q+  LG +  IAR  
Sbjct: 176 KALRKLEAMAANLTRLTDLSAELRRQLGPLGRQAEIARKA 215


>gi|262202013|ref|YP_003273221.1| chromosome segregation protein SMC [Gordonia bronchialis DSM 43247]
 gi|262085360|gb|ACY21328.1| chromosome segregation protein SMC [Gordonia bronchialis DSM 43247]
          Length = 1217

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      ++N    R
Sbjct: 61  MEDVIFAGTSGRPPLGRAEVTLTIDNADGALPIEYSEVSITRRMFRDGAGEYEVNGSKCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLSAILESRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KAVRKLDAMQANLARLTDLTAELRRQLKPLGRQAEVARRA 215


>gi|303244904|ref|ZP_07331230.1| SMC domain protein [Methanothermococcus okinawensis IH1]
 gi|302484721|gb|EFL47659.1| SMC domain protein [Methanothermococcus okinawensis IH1]
          Length = 997

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 67/162 (41%), Gaps = 22/162 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA-SYAD 63
           + IK +NI  FR++ + ++ FD   T  +G NG GK++I EA+++    RG     +  D
Sbjct: 1   MIIKAINIRNFRSHKNTQISFDKGITTIIGHNGSGKSSIFEAMNYALYARGSVSNVNIDD 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI----------NDVVIRVV 113
           + + G+  F      +E +  +   + K+     +     ++          N  V   +
Sbjct: 61  LIKRGTNQFL-----IELLFEIGGNTYKVVRGRGKGGNIDRLYINNSLYAETNSEVNNKI 115

Query: 114 DELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVF 149
            E+       +L         ++ + +    ER+R +  ++ 
Sbjct: 116 KEILGIDHKVFLNAIYIKQGEINSLINLRPAERKRLIGTLLG 157



 Score = 40.7 bits (94), Expect = 0.42,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 74/210 (35%), Gaps = 28/210 (13%)

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
             L   +N +L +      +  +   ++ E   KI+    +  N +  +      K    
Sbjct: 763 NTLNNSKNNILEKIDNLDYYDKTYHDKLKENYEKISNKLNDANNKIVEVKSYLNSKTELL 822

Query: 223 HIKLS-LTGFLDGKFDQSFCALKEEYAKKLFDG-----------RKMDS--MSRRTLIGP 268
              ++ L   L+ + ++       +Y K + +            R+     + + T    
Sbjct: 823 QNYVNNLNKLLNKEKEKERLEKYIDYLKDIRENVFSKNGFQQYLREKYIPLIQKYTNEIF 882

Query: 269 HRSDLIVDYCD---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
           +  +L   +             + +   S GEQ  V + + L    +          ++L
Sbjct: 883 NEFELPYSHIQIKNDYDIIVDELPVKTLSGGEQIAVSLALRLG---ISKAVCNNLQCIIL 939

Query: 320 DEISAHLDEDKRNALFRIVTDIG--SQIFM 347
           DE +A LDED+R  L  +  +I   SQ+F+
Sbjct: 940 DEPTAFLDEDRRKKLLNVFGNIKTISQVFV 969


>gi|302542227|ref|ZP_07294569.1| smc [Streptomyces hygroscopicus ATCC 53653]
 gi|302459845|gb|EFL22938.1| smc [Streptomyces himastatinicus ATCC 53653]
          Length = 522

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 99/294 (33%), Gaps = 43/294 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   Q+N    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNADGALPIDYAEVTITRIMFRNGGSEYQLNGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +       RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDGVLHADPTGRRAFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210
           + +R  + +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 211 LIMEYVQKENFPHIKLSL---TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            + E ++ E     +L         + +  Q      EE+ ++L   R  D+  
Sbjct: 236 TLREALRAEVADEAELKKRKEATEAELRTAQRRETALEEHVRQLAP-RLRDAQE 288


>gi|296139304|ref|YP_003646547.1| chromosome segregation protein SMC [Tsukamurella paurometabola DSM
           20162]
 gi|296027438|gb|ADG78208.1| chromosome segregation protein SMC [Tsukamurella paurometabola DSM
           20162]
          Length = 1194

 Score = 76.5 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+NIL+A+ ++      +G R   
Sbjct: 1   MYLKSLTLKGFKSFASATTLRLEPGITCVVGPNGSGKSNILDALRWVMGEQGAKGLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSGRAPLGRAEVTLTIDNSDGALPIDYTEVSITRRMFRDGAGEYEINGTKCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      ERR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGQLAAILESKPEERRAFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KAVRKLDSMQANLARLTDLTTELRRQLKPLGRQAEVARRA 215


>gi|260578980|ref|ZP_05846882.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
 gi|258602845|gb|EEW16120.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
           43734]
          Length = 376

 Score = 76.1 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 101/289 (34%), Gaps = 45/289 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLKLEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTGDRKPLGRAEVTLTIDNSDGKLPIEYSEVSITRRMFRDGASEYEINGAKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      + +I      ERR F++     +  R R+     +
Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEERRAFIEEAAGVLKHRRRKEKAQRK 180

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEM----IN 206
            +    N  L   +        +  Q+  L                I   RV++    + 
Sbjct: 181 LVNMQAN--LDRLH---DLTDELRKQLGPLARQAEAAQKASAVQATIRSTRVQLAAHKVK 235

Query: 207 ALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            LS  + +  ++ E     +  L   L+ +  ++    +EE    L + 
Sbjct: 236 QLSEELNDSTRRSEMLAEQRAELQAELE-EHSETLAVTEEELRTALEEA 283


>gi|68536279|ref|YP_250984.1| chromosome segregation protein [Corynebacterium jeikeium K411]
 gi|68263878|emb|CAI37366.1| chromosome segregation protein [Corynebacterium jeikeium K411]
          Length = 1162

 Score = 76.1 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 101/289 (34%), Gaps = 45/289 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLKLEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTGDRKPLGRAEVTLTIDNSDGKLPIEYSEVSITRRMFRDGASEYEINGAKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      + +I      ERR F++     +  R R+     +
Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEERRAFIEEAAGVLKHRRRKEKAQRK 180

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEM----IN 206
            +    N  L   +        +  Q+  L                I   RV++    + 
Sbjct: 181 LVNMQAN--LDRLH---DLTDELRKQLGPLARQAEAAQKASAVQATIRSTRVQLAAHKVK 235

Query: 207 ALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            LS  + +  ++ E     +  L   L+ +  ++    +EE    L + 
Sbjct: 236 QLSEELNDSTRRSEMLAEQRAELQAELE-EHSETLAVTEEELRTALEEA 283


>gi|23465915|ref|NP_696518.1| chromosome partitioning protein Smc [Bifidobacterium longum
           NCC2705]
 gi|23326623|gb|AAN25154.1| chromosome partitioning protein Smc [Bifidobacterium longum
           NCC2705]
          Length = 1225

 Score = 76.1 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 28/246 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+NI++A++++      +  R  S
Sbjct: 1   MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   DI    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R      T           I  Q+  LG +  I+R    +A+   + +   +     
Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233

Query: 224 IKLSLT 229
            + S++
Sbjct: 234 AQRSMS 239


>gi|288931890|ref|YP_003435950.1| chromosome segregation protein SMC [Ferroglobus placidus DSM 10642]
 gi|288894138|gb|ADC65675.1| chromosome segregation protein SMC [Ferroglobus placidus DSM 10642]
          Length = 1166

 Score = 76.1 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 103/294 (35%), Gaps = 41/294 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRA 59
           + I+ + +  F++++    + F     +  G NG GK+NI++AI F           R  
Sbjct: 1   MHIEKIELKNFKSFSRKTEIPFVKGFNVISGPNGSGKSNIIDAILFCLGLSSSTKVLRAE 60

Query: 60  SYADVT---RIGSPSFFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
              D+      G  +  S   R   EG  G  ++  +++  +        IN     + D
Sbjct: 61  KLTDLISLNSNGKEAEVSITFRSENEGENGKVEVKRRIKVTESGYYSYYYINSKPCSLAD 120

Query: 115 E--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFER 164
                    + +      +   + RI      +RR+ +D    +   D +  + + + E 
Sbjct: 121 VKKFLEKAGVYEDTPNVIMQGDVTRIVEMSPYQRRKVIDDIAGISEFDEKKEKALQELEV 180

Query: 165 L-------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI-ARVEMINALSS 210
           +             +    + L +   ++    S+  +  EL  +I    R+E++  L  
Sbjct: 181 VRENIEKISAVLAEVEQHLKTLEKDREEALRYKSLLERKEELEREILAHKRLEVLKKLER 240

Query: 211 LIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSR 262
           +  E ++ E     +          K       L EE+ + + +   +MD   +
Sbjct: 241 VTKEIIESEREIDELHEEF-----AKIKAEVEKLNEEFEEIVREISSRMDERYK 289


>gi|294791072|ref|ZP_06756230.1| Smc [Scardovia inopinata F0304]
 gi|294458969|gb|EFG27322.1| Smc [Scardovia inopinata F0304]
          Length = 1257

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 30/267 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+NI++A++++      +  R  S
Sbjct: 1   MYVKELTLRGFKSFANATTLRFEPGITAVVGPNGSGKSNIVDALAWVMGEQGAKTLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +G  DI    + +             IN   +R
Sbjct: 61  MEDVIFAGTSSRSPLGRAQVSLTIDNSDGTLDIDYSEVTISRTIFRNGGSEYAINGSPVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L  H+ +      +D I      + R F++     +  R        E
Sbjct: 121 LLDVQELLSDTGLGSHMHVVVGQGRLDSILRATPADNRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R                  I  Q+  L  +  ++R    +++   + + + +     
Sbjct: 176 RALRKLQGTQENLDRVDDLLQEIHRQLGPLRRQARVSRRA--DSIQISLRDAMSRLYADD 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKK 250
             L +T   D        A++ + A++
Sbjct: 234 A-LQITHSRD-SLRHDLAAIRAQLAEQ 258


>gi|116671041|ref|YP_831974.1| condensin subunit Smc [Arthrobacter sp. FB24]
 gi|116611150|gb|ABK03874.1| condensin subunit Smc [Arthrobacter sp. FB24]
          Length = 1222

 Score = 76.1 bits (186), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 100/274 (36%), Gaps = 27/274 (9%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS     F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTVRGFKSFASATTFDFEPGVTAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+        A V       D ++ +E  +    R L         IN    R
Sbjct: 61  MEDVIFAGTSGRPPLGRAHVSLTIDNTDGALPIEYSEVTISRTLFRTGGSEYAINGAGCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D++      +RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGLGREMHVIVGQGQLDKVLHATPEDRRGFIEEAAGILKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R    +       S   S I  Q+  LG +  +AR         +     +      
Sbjct: 176 KTVRKLEAMQANLQRLSDLTSEIRRQLTPLGKQAEVARRAQSVQF-DVRDARARLLADDL 234

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           ++L      D   + +  A +    + L +GR+ 
Sbjct: 235 VQLQSALAQDVADESALKARRAVVEEGLKNGRQR 268


>gi|291516692|emb|CBK70308.1| condensin subunit Smc [Bifidobacterium longum subsp. longum F8]
          Length = 1225

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 87/246 (35%), Gaps = 28/246 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+NI++A I  +     +  R  S
Sbjct: 1   MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   DI    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R      T           I  Q+  LG +  I+R    +A+   + +   +     
Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233

Query: 224 IKLSLT 229
            + S++
Sbjct: 234 AQRSMS 239


>gi|152965358|ref|YP_001361142.1| chromosome segregation protein SMC [Kineococcus radiotolerans
           SRS30216]
 gi|151359875|gb|ABS02878.1| chromosome segregation protein SMC [Kineococcus radiotolerans
           SRS30216]
          Length = 1191

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 81/225 (36%), Gaps = 29/225 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L      T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKTLTLKGFKSFASATTLRLQPGITCVVGPNGSGKSNVVDALTWVMGEHSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFSTFA--------RVEGMEGLADIS----IKLETRDDRSVRCLQINDV 108
             DV   G+       A         ++  +G   I         T          IN  
Sbjct: 61  MEDVIFAGTTGPEGRSALGRAEVSLTIDNTDGALPIEFAEVTITRTMFRTGGSEYAINGQ 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             R++D         + + + +      +D +      ERR F++     +  R      
Sbjct: 121 NCRLLDVQELLSDSGIGREMHVIVGQGQIDAVLHASPEERRAFIEEAAGVLKHR-----R 175

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
             E+ +R  + +       +   + I  Q+  LG +  +AR   +
Sbjct: 176 RKEKALRKLDAMEANLTRVADLVTEIRRQLKPLGRQAEVARRAQV 220


>gi|297191809|ref|ZP_06909207.1| chromosome segregation protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151081|gb|EDY65907.2| chromosome segregation protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 319

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 93/283 (32%), Gaps = 39/283 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKAMTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210
           + +R  + +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLDAMRANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
            + E ++ E      L           ++    + +   ++  
Sbjct: 236 RMREALRTEVADEAALKQRKEAAEAELKAALTREADLEDEVRR 278


>gi|23335416|ref|ZP_00120652.1| COG1196: Chromosome segregation ATPases [Bifidobacterium longum
           DJO10A]
 gi|189439082|ref|YP_001954163.1| chromosome segregation ATPase [Bifidobacterium longum DJO10A]
 gi|189427517|gb|ACD97665.1| Chromosome segregation ATPase [Bifidobacterium longum DJO10A]
          Length = 1225

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 87/246 (35%), Gaps = 28/246 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+NI++A I  +     +  R  S
Sbjct: 1   MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   DI    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R      T           I  Q+  LG +  I+R    +A+   + +   +     
Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233

Query: 224 IKLSLT 229
            + S++
Sbjct: 234 AQRSMS 239


>gi|322691439|ref|YP_004221009.1| chromosome partitioning protein Smc [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456295|dbj|BAJ66917.1| chromosome partitioning protein Smc [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 1225

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 28/246 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60
           + +K L +  F+++AS+  L F+   T  VG NG GK+NI++A I  +     +  R  S
Sbjct: 1   MYLKELTLRGFKSFASVTTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   DI    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R      T           I  Q+  LG +  I+R    +A+   + +   +     
Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233

Query: 224 IKLSLT 229
            + S++
Sbjct: 234 AQRSMS 239


>gi|289643133|ref|ZP_06475262.1| chromosome segregation protein SMC [Frankia symbiont of Datisca
           glomerata]
 gi|289507025|gb|EFD27995.1| chromosome segregation protein SMC [Frankia symbiont of Datisca
           glomerata]
          Length = 1253

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 84/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++A++++      +  R  +
Sbjct: 1   MHLKSLTLRGFKSFASSTTLHLEPGITCVVGPNGSGKSNVVDAMAWVLGEQGAKALRGGT 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
            +DV   G+PS            ++  +G   I     T      R       IN    R
Sbjct: 61  MSDVIFAGTPSRPPLGRAEVLLTIDNTDGALPIDYSEVTVGRLMFRSGESEYTINGSTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + L +      +D +      +RR F++     +  R        E
Sbjct: 121 LLDIQELMSDSGIGRELHVIVGQGQLDAVLHARPEDRRAFVEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R    +       +   + +  Q+  LG +  IAR  
Sbjct: 176 KALRKLEAMAANLTRLTDLSAELRRQLGPLGRQAEIARKA 215


>gi|213691783|ref|YP_002322369.1| chromosome segregation protein SMC [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523244|gb|ACJ51991.1| chromosome segregation protein SMC [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320457876|dbj|BAJ68497.1| chromosome partitioning protein Smc [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 1225

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 89/246 (36%), Gaps = 28/246 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+NI++A++++      +  R  S
Sbjct: 1   MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   DI    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R      T           I  Q+  LG +  I+R    +A+   + +   +     
Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233

Query: 224 IKLSLT 229
            + S++
Sbjct: 234 AQRSMS 239


>gi|291299633|ref|YP_003510911.1| chromosome segregation protein SMC [Stackebrandtia nassauensis DSM
           44728]
 gi|290568853|gb|ADD41818.1| chromosome segregation protein SMC [Stackebrandtia nassauensis DSM
           44728]
          Length = 1191

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 97/268 (36%), Gaps = 30/268 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++AI+++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSGRAPLGRAEVTLTIDNSDGAIPIDYTEVSITRRMFRSGEGEYEINGDRCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
           ++D +   L  S +   M  +               +RR F++     +  R        
Sbjct: 121 LLD-IQDLLSDSGIGREMHVLVGQGKLDSYLHARPEDRRAFIEEAAGVLKHR-----KRK 174

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           E+ +R    +       +   S +  Q+  LG +  +AR      + + + +  Q+    
Sbjct: 175 EKALRKLEAMEANLNRLNDLTSELRRQLKPLGRQAELARRA--AGIQADLRDARQRLLAD 232

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            +    TG      D++    K E  + 
Sbjct: 233 DLAQLRTGLARDLADENSVRAKRERVEA 260


>gi|326382861|ref|ZP_08204551.1| chromosome partition protein SMC [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198451|gb|EGD55635.1| chromosome partition protein SMC [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 1218

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASSTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
            ADV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MADVIFAGTSGRAPLGRAEVTLTIDNSDGALPIEYSEVSVTRRMFRDGAGEYEINGNSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      ERR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVILGQGRLAAILEARPEERRAFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KAVRKLDAMAANLDRLTDLTTELRRQLKPLGRQAEVARRA 215


>gi|271969192|ref|YP_003343388.1| chromosome segregation SMc protein [Streptosporangium roseum DSM
           43021]
 gi|270512367|gb|ACZ90645.1| chromosome segregation SMC protein [Streptosporangium roseum DSM
           43021]
          Length = 1227

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 26/222 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKTLTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEHSAKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S            ++  +G   I    + +     R+ +    IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTLTIDNSDGALPIDYTEVTISRLMFRAGQSEYAINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D++      +RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDQVLHAGPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
           + +R  + +           + +  Q+  LG +  IAR   +
Sbjct: 176 KALRKLDAMQANLTRVQDLATELRRQLKPLGRQAEIARKAAV 217


>gi|239621193|ref|ZP_04664224.1| condensin subunit Smc [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|239515654|gb|EEQ55521.1| condensin subunit Smc [Bifidobacterium longum subsp. infantis CCUG
           52486]
          Length = 1225

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 28/246 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60
           + +K L +  F+++AS+  L F+   T  VG NG GK+NI++A I  +     +  R  S
Sbjct: 1   MYLKELTLRGFKSFASVTTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   DI    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R      T           I  Q+  LG +  I+R    +A+   + +   +     
Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233

Query: 224 IKLSLT 229
            + S++
Sbjct: 234 AQRSMS 239


>gi|309810310|ref|ZP_07704148.1| chromosome segregation protein SMC [Dermacoccus sp. Ellin185]
 gi|308435738|gb|EFP59532.1| chromosome segregation protein SMC [Dermacoccus sp. Ellin185]
          Length = 1223

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 81/220 (36%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   LV +   T  VG NG GK+N+++A++++      R  R   
Sbjct: 1   MYVKSLTLKGFKSFASATNLVLEPGITCIVGPNGSGKSNVVDALAWVMGEGSARSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +G   I     T      R       IN    R
Sbjct: 61  MDDVIFAGTSGRQPLGRAEVTMTIDNSDGALPIDYTEVTISRTMFRGGGSEYAINRTPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + K + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGKEMHVIVGQGQLDAVLRATPEERRGFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +   AR  
Sbjct: 176 KALRKLDGMEANLTRVADLTAEVRRQLGPLGRQAETARRA 215


>gi|238768522|dbj|BAH66834.1| hypothetical protein [Staphylococcus aureus]
          Length = 687

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 72/392 (18%), Positives = 135/392 (34%), Gaps = 64/392 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--------GF 56
           + I  + I  FRN+ ++ + F     + +G N  GK+N+L A+S +  G          F
Sbjct: 1   MYISSVKIKNFRNFDNIDIDFHEGVNVLIGHNNSGKSNLLRALSLIFDGSVRKQLSVEDF 60

Query: 57  RRASYAD---------VT----------RIGSPSFFSTFARVEGMEGLADISIKLETRDD 97
             +   +         V           R+ S    +    +  +E   +  I+ E    
Sbjct: 61  NNSLTKESLKKEAPKIVISVHITQSENERLMSDELITVSNWLTKLEEPYEARIQYEFFLP 120

Query: 98  RSVRCLQINDVV-IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
           +      I+ V  I   +E+   +R  ++   +++I+ G    +    +  +   D +  
Sbjct: 121 KDEEKNYIDLVKNIDEKEEIWNLIRSQFIRLYVNKIWVGNPEHQIPIDNDSLNKFDFQFL 180

Query: 157 RRMIDFER-LMRGRNRLLT---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
             + D ER +  G+N LL    + + D    S       E   K+   R E  +  S LI
Sbjct: 181 DAIRDVERDMFSGKNTLLKSVIDFFIDYDIKSDETITEEEQKEKLEERRKEFSDNSSDLI 240

Query: 213 MEYVQKENFPHIK-LSLTGFLDGKFDQSFCALKEEYAK-------KLFDGRKMDSMSRRT 264
               ++ +  + K LS T  +   +D+S    K    +       +L    +       T
Sbjct: 241 ETIHKRLDSGNQKILSYTNGIGASYDKSTPDFKGNLTESEIYTVLQLIIKHETGMTLPIT 300

Query: 265 LIGPHRSDLIVD--YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
             G   ++LI       K    + G                   + +     PIL ++E 
Sbjct: 301 HNGLGYNNLIFMALLLSKMQADSDG-----------------NFLGSNAKVFPILAIEEP 343

Query: 323 SAHLDEDKRNALFRIVT-----DIGSQIFMTG 349
            AHL    +N   + +          QIF+T 
Sbjct: 344 EAHLHPTMQNEFIKFLKNNIREKKVKQIFITT 375


>gi|315656359|ref|ZP_07909248.1| chromosome segregation protein SMC [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492918|gb|EFU82520.1| chromosome segregation protein SMC [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 1201

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 113/283 (39%), Gaps = 36/283 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+ + +  +   T  VG NG GK+N+++A++++      +  R + 
Sbjct: 1   MYLKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQ 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
            +DV   G+ +      A V+     +D ++ +E  +    R +         IN   +R
Sbjct: 61  MSDVIFAGTKTKAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +DRI S   +ERR F++     +  R        +
Sbjct: 121 LLDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHR-----QRKD 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R ++    L           + +  ++  LG +   AR      + + + +   +     
Sbjct: 176 RALKKLENLAVNLSRVQDLTNEVAKRLGPLGKQAEAARKA--ARVQAELADATARLIADA 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKL--FDGRKMDSMSRRT 264
           +        + +   S  A KE+ + +L   + R  +  ++ T
Sbjct: 234 VA------QNKEKAGSQTASKEQISAQLADLETRLQELNTKLT 270


>gi|322689473|ref|YP_004209207.1| chromosome partitioning protein Smc [Bifidobacterium longum subsp.
           infantis 157F]
 gi|320460809|dbj|BAJ71429.1| chromosome partitioning protein Smc [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 1221

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 87/246 (35%), Gaps = 28/246 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+NI++A I  +     +  R  S
Sbjct: 1   MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   DI    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R      T           I  Q+  LG +  I+R    +A+   + +   +     
Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233

Query: 224 IKLSLT 229
            + S++
Sbjct: 234 AQRSMS 239


>gi|298345307|ref|YP_003717994.1| SMC structural maintenance of chromosomes partitioning protein
           [Mobiluncus curtisii ATCC 43063]
 gi|298235368|gb|ADI66500.1| SMC structural maintenance of chromosomes partitioning protein
           [Mobiluncus curtisii ATCC 43063]
          Length = 1201

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 113/283 (39%), Gaps = 36/283 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+ + +  +   T  VG NG GK+N+++A++++      +  R + 
Sbjct: 1   MYLKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQ 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
            +DV   G+ +      A V+     +D ++ +E  +    R +         IN   +R
Sbjct: 61  MSDVIFAGTKTKAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +DRI S   +ERR F++     +  R        +
Sbjct: 121 LLDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHR-----QRKD 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R ++    L           + +  ++  LG +   AR      + + + +   +     
Sbjct: 176 RALKKLENLAVNLSRVQDLTNEVAKRLGPLGKQAEAARKA--ARVQAELADATARLIADA 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKL--FDGRKMDSMSRRT 264
           +        + +   S  A KE+ + +L   + R  +  ++ T
Sbjct: 234 VA------QNKEKAGSQTASKEQISAQLADLETRLQELNTKLT 270


>gi|304390864|ref|ZP_07372816.1| SMC structural maintenance of chromosomes partitioning protein
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|304325747|gb|EFL92993.1| SMC structural maintenance of chromosomes partitioning protein
           [Mobiluncus curtisii subsp. curtisii ATCC 35241]
          Length = 1201

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 113/283 (39%), Gaps = 36/283 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+ + +  +   T  VG NG GK+N+++A++++      +  R + 
Sbjct: 1   MYLKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQ 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
            +DV   G+ +      A V+     +D ++ +E  +    R +         IN   +R
Sbjct: 61  MSDVIFAGTKTKAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +DRI S   +ERR F++     +  R        +
Sbjct: 121 LLDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHR-----QRKD 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R ++    L           + +  ++  LG +   AR      + + + +   +     
Sbjct: 176 RALKKLENLAVNLSRVQDLTNEVAKRLGPLGKQAEAARKA--ARVQAELADATARLIADA 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKL--FDGRKMDSMSRRT 264
           +        + +   S  A KE+ + +L   + R  +  ++ T
Sbjct: 234 VA------QNKEKAGSQTASKEQISAQLADLETRLQELNTKLT 270


>gi|312140446|ref|YP_004007782.1| chromosome segregation protein smc [Rhodococcus equi 103S]
 gi|311889785|emb|CBH49102.1| chromosome segregation protein Smc [Rhodococcus equi 103S]
          Length = 1200

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MQDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIEYSEVSITRRMFRDGAGEYEINGNSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLSAILESRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KAVRKLDAMQANLARLTDLTAELRRQLKPLGRQAEVARRA 215


>gi|325675939|ref|ZP_08155622.1| SMC structural maintenance of chromosomes partitioning protein
           [Rhodococcus equi ATCC 33707]
 gi|325553177|gb|EGD22856.1| SMC structural maintenance of chromosomes partitioning protein
           [Rhodococcus equi ATCC 33707]
          Length = 1200

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MQDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIEYSEVSITRRMFRDGAGEYEINGNSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLSAILESRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KAVRKLDAMQANLARLTDLTAELRRQLKPLGRQAEVARRA 215


>gi|317483516|ref|ZP_07942501.1| chromosome segregation protein SMC [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316915040|gb|EFV36477.1| chromosome segregation protein SMC [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 1225

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 28/246 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60
           + +K L +  F+++AS+  L F+   T  VG NG GK+NI++A I  +     +  R  S
Sbjct: 1   MYLKELTLRGFKSFASVTTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   DI    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R      T           I  Q+  LG +  I+R    +A+   + +   +     
Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233

Query: 224 IKLSLT 229
            + S++
Sbjct: 234 AQRSMS 239


>gi|308177250|ref|YP_003916656.1| chromosome segregation protein Smc [Arthrobacter arilaitensis
           Re117]
 gi|307744713|emb|CBT75685.1| chromosome segregation protein Smc [Arthrobacter arilaitensis
           Re117]
          Length = 1190

 Score = 75.7 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 102/274 (37%), Gaps = 29/274 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS     F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKTLTVRGFKSFASATTFEFEPGVTAVVGPNGSGKSNVVDALSWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+        A V       D  + ++  +    R L         IN    R
Sbjct: 61  MEDVIFAGTSGRAPLGRAHVSLTIDNTDGQLPIDYAEVTISRTLFRAGGSEYAINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +DRI    + +RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGLGREMHVIVGQGQLDRILHATAEDRRGFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R    +           S +  Q+A LG +  IAR      L   + +   +     
Sbjct: 176 KTLRKLQAMQGNLDRLEDLSSEVRRQLAPLGRQAKIARRAKTVQL--DVRDAKSRLLADD 233

Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +  L+     D   +    A +++   +L  GRK
Sbjct: 234 LVTLNNKLAQDIDDESRIQAQQDDANARLERGRK 267


>gi|227547590|ref|ZP_03977639.1| chromosome segregation protein SMC [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227211845|gb|EEI79741.1| chromosome segregation protein SMC [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 1225

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/246 (19%), Positives = 88/246 (35%), Gaps = 28/246 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60
           + +K L +  F+++AS+  L F+   T  VG NG GK+NI++A I  +     +  R  S
Sbjct: 1   MYLKELTLRGFKSFASVTTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   DI    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R      T           I  Q+  LG +  I+R    +A+   + +   +     
Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233

Query: 224 IKLSLT 229
            + S++
Sbjct: 234 AQRSMS 239


>gi|240169623|ref|ZP_04748282.1| chromosome partition protein Smc [Mycobacterium kansasii ATCC
           12478]
          Length = 1201

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAAATTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I      ERR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEERRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KALRKLDAMAANLARLTDLTTELRRQLKPLGRQAEVARRA 215


>gi|159036827|ref|YP_001536080.1| chromosome segregation protein SMC [Salinispora arenicola CNS-205]
 gi|157915662|gb|ABV97089.1| chromosome segregation protein SMC [Salinispora arenicola CNS-205]
          Length = 1198

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 26/222 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++AI+++      +  R   
Sbjct: 1   MHLKSLTVKGFKSFASATTLKLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTAGRAPLGRAEVTLTIDNTDGALPIEYTEVSITRRMFRSGESEYEINGDSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + I      +D +      +RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHIIVGQGRLDGMLHAKPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
           + +R  + + T     +   + +  Q+  LG +  +AR   +
Sbjct: 176 KALRKLDAMQTNLNRLTDLTAELRRQLKPLGRQAEVARRAAV 217


>gi|291457652|ref|ZP_06597042.1| Smc protein [Bifidobacterium breve DSM 20213]
 gi|291380705|gb|EFE88223.1| Smc protein [Bifidobacterium breve DSM 20213]
          Length = 1215

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 28/242 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+NI++A++++      +  R  S
Sbjct: 1   MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   DI    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R      +           I  Q+  LG +  I+R    +A+   + +   +     
Sbjct: 176 RALRKLANTESNLNRLDDLLREIHRQLGPLGRQARISRRA--DAIQVSVRDAQARIYAED 233

Query: 224 IK 225
            +
Sbjct: 234 AQ 235


>gi|296454399|ref|YP_003661542.1| chromosome segregation protein SMC [Bifidobacterium longum subsp.
           longum JDM301]
 gi|296183830|gb|ADH00712.1| chromosome segregation protein SMC [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 1225

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/244 (19%), Positives = 87/244 (35%), Gaps = 28/244 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+NI++A++++      +  R  S
Sbjct: 1   MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   DI    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R      T           I  Q+  LG +  I+R    +A+   + +   +     
Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233

Query: 224 IKLS 227
            + S
Sbjct: 234 AQRS 237


>gi|134102508|ref|YP_001108169.1| chromosome segregation ATPase [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915131|emb|CAM05244.1| chromosome segregation ATPase [Saccharopolyspora erythraea NRRL
           2338]
          Length = 1312

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 81/220 (36%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+L+A+ ++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVLDALRWVMGEQGAKDLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIEYTEVSITRRMFRDGASEYEINGNSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      E RR ++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGQLANILQAKPDEHRRLIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   S +  Q+  LG +  IAR  
Sbjct: 176 KALRKLDAMQANLTRLTDLTSELRRQLKPLGKQAEIARKA 215


>gi|72161059|ref|YP_288716.1| condensin subunit Smc [Thermobifida fusca YX]
 gi|71914791|gb|AAZ54693.1| condensin subunit Smc [Thermobifida fusca YX]
          Length = 1183

 Score = 75.3 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 98/275 (35%), Gaps = 27/275 (9%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKTLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDVVIR 111
             DV   G+ S            ++  +G   I         T          IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAEVSLTIDNTDGALPIDYSEVTIKRTMFRNGGSEYAINGDPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +      ERR  ++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDTVLHAGPEERRALIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R  + + +     S   + +  Q+  LG +  +AR   +   + L    ++      
Sbjct: 176 KALRKLSAMQSNLDRVSDLVAELRRQLKPLGRQAELARRATVIQ-AELRDARLRLLADDI 234

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
           + L      +   +    A +     +L   ++ +
Sbjct: 235 VTLREALAKEEADEAEVRARRAAVEAELTQAQERE 269


>gi|302558155|ref|ZP_07310497.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302475773|gb|EFL38866.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 463

 Score = 75.3 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/293 (16%), Positives = 97/293 (33%), Gaps = 49/293 (16%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     + RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGRLDSVLHADPLGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210
           + +R  + +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
            + E ++ E      L           +   A + E  K L     ++   RR
Sbjct: 236 RLREALRAEIADEAAL----------KERKEAAEAELGKALRREADLEDEVRR 278


>gi|315655727|ref|ZP_07908625.1| chromosome segregation protein SMC [Mobiluncus curtisii ATCC 51333]
 gi|315489791|gb|EFU79418.1| chromosome segregation protein SMC [Mobiluncus curtisii ATCC 51333]
          Length = 1201

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 91/220 (41%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+ + +  +   T  VG NG GK+N+++A++++      +  R + 
Sbjct: 1   MYLKSLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGSQ 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
            +DV   G+ +      A V+     +D ++ +E  +    R +         IN   +R
Sbjct: 61  MSDVIFAGTKTKAPLGRAEVQLTIDNSDGALPIEYSEVTISRTMFRAGGSEYAINGTSVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +DRI S   +ERR F++     +  R        +
Sbjct: 121 LLDIQELLSDTGMGREMHVIVGQGQLDRILSASELERRAFIEEAAGVLKHR-----QRKD 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           R ++    L           + +  ++  LG +   AR  
Sbjct: 176 RALKKLENLAVNLSRVQDLTNEVAKRLGPLGKQAEAARKA 215


>gi|256832209|ref|YP_003160936.1| chromosome segregation protein SMC [Jonesia denitrificans DSM
           20603]
 gi|256685740|gb|ACV08633.1| chromosome segregation protein SMC [Jonesia denitrificans DSM
           20603]
          Length = 1172

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/207 (18%), Positives = 81/207 (39%), Gaps = 26/207 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS     F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKTLTVRGFKSFASATRFDFEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +  +   A V      +D  + +E  +    R L         IN   +R
Sbjct: 61  MEDVIFAGTSARPALGRAEVSLTIDNSDGRLPIEFSEVTITRTLFRQGGSEYAINGAPVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGREMHVIVGQGQLDTVLRATPTERRGFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM 190
           + +R  + +       +   + +  Q+
Sbjct: 176 KALRKLDSMQGNLLRLADLLAELSRQL 202


>gi|330466271|ref|YP_004404014.1| chromosome segregation protein smc [Verrucosispora maris AB-18-032]
 gi|328809242|gb|AEB43414.1| chromosome segregation protein smc [Verrucosispora maris AB-18-032]
          Length = 1204

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 101/274 (36%), Gaps = 27/274 (9%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++AI+++      +  R   
Sbjct: 1   MHLKSLTVKGFKSFASATTLKLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTAGRAPLGRAEVTLTIDNTDGALPIEYTEVSITRRMFRSGESEYEINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + I      +D +      +RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHIIVGQGRLDGMLHAKPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R  + + T     +   + +  Q+  LG +  +AR   +   +SL    ++      
Sbjct: 176 KALRKLDAMQTNLNRLTDLTAELRRQLKPLGRQAEVARRAAVIQ-ASLRDARLRLLADDL 234

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
             L  T   +   + +    +EE   +  + +  
Sbjct: 235 ATLRTTLDREIADETALRQRREEVEAEHTEVQAR 268


>gi|312132519|ref|YP_003999858.1| smc [Bifidobacterium longum subsp. longum BBMN68]
 gi|311773453|gb|ADQ02941.1| Smc [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1225

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 84/242 (34%), Gaps = 28/242 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+NI++A I  +     +  R  S
Sbjct: 1   MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALIWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   DI    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLDIDYTEVTISRTIFRNGGSEYAINGSQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R      T           I  Q+  LG +  I+R    +A+   + +   +     
Sbjct: 176 RALRKLANTETNLSRLDDLLGEIHRQLGPLGRQARISRRA--DAIQISVRDAQARLYAED 233

Query: 224 IK 225
            +
Sbjct: 234 AQ 235


>gi|302865867|ref|YP_003834504.1| chromosome segregation protein SMC [Micromonospora aurantiaca ATCC
           27029]
 gi|315502412|ref|YP_004081299.1| chromosome segregation protein smc [Micromonospora sp. L5]
 gi|302568726|gb|ADL44928.1| chromosome segregation protein SMC [Micromonospora aurantiaca ATCC
           27029]
 gi|315409031|gb|ADU07148.1| chromosome segregation protein SMC [Micromonospora sp. L5]
          Length = 1199

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 100/284 (35%), Gaps = 43/284 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++AI+++      +  R   
Sbjct: 1   MHLKSLTVKGFKSFASATTLKLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTAGRAPLGRAEVTLTIDNTDGALPIEYTEVSITRRMFRSGESEYEINGDSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + I      +D +      +RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHIIVGQGRLDGMLHAKPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINA--- 207
           + +R  + + T     +   + +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLDAMQTNLNRLTDLTAELRRQLKPLGRQAEVARRAAGIQANLRDARLRLLADDLH 235

Query: 208 -LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            L + + + +  E     +  L     G+       L+   A+ 
Sbjct: 236 TLRTTLDKEIADETALRERRELIEAEHGEVQGRLGELEAALAED 279


>gi|254822114|ref|ZP_05227115.1| chromosome segregation protein SMC [Mycobacterium intracellulare
           ATCC 13950]
          Length = 316

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 215


>gi|311744092|ref|ZP_07717898.1| SMC structural maintenance of chromosomes partitioning protein
           [Aeromicrobium marinum DSM 15272]
 gi|311313222|gb|EFQ83133.1| SMC structural maintenance of chromosomes partitioning protein
           [Aeromicrobium marinum DSM 15272]
          Length = 1185

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/222 (18%), Positives = 81/222 (36%), Gaps = 26/222 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MYLKSLTLRGFKSFASTTTLEFETGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I         T          IN    R
Sbjct: 61  MEDVIFAGTSGRPPLGRAEVVLTIDNSDGALPIEYAEVTISRTMFRNGGSEYAINGTTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDVQDLLSDSGIGREMHVIVGQGQLDSVLRATPEERRGFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
           + +R  +         +   + +  Q+  LG +  +AR   +
Sbjct: 176 KALRKLDSTQGNLTRLTDVLNELRRQLKPLGRQAEVARRAAV 217


>gi|170781180|ref|YP_001709512.1| putative chromosome structure maintenance protein [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155748|emb|CAQ00869.1| putative chromosome structure maintenance protein [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 1241

 Score = 74.9 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 118/319 (36%), Gaps = 31/319 (9%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A      F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFAQPTTFQFETGVTCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS-IKLETRD---DRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I   ++  R            IN    R
Sbjct: 61  MEDVIFAGTSTRGPLGRAEVTLTIDNADGALPIDYTEVAIRRTLFRNGGSEYAINGTSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDVQELLSDSGLGREMHVIVGQGRLDNVLRATPEERRGFIEEAAGILKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV-EMINALSSLIMEYVQKENFP 222
           R +R    +       +     I  Q+  LG +  +AR  + + A+       +  +   
Sbjct: 176 RTLRKLEGMQANLTRLNDLAGEIRRQLKPLGRQAEVARQAQTVAAVVRDARARLVADEVV 235

Query: 223 HIKLSLTGFLDGKFDQSFCA--LKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
            ++ +L      + +++     L+E+  +  L   R ++      + G  R+   ++   
Sbjct: 236 TLRRALAEHTRTEEERTTERMVLQEKLDRAVLRSERIVEEQEGDEVDGARRTAFALEQVQ 295

Query: 280 KAITIAHGSTGEQKVVLVG 298
           + +     S  +Q++ L+G
Sbjct: 296 ERLR-NLLSLAQQRLALLG 313


>gi|288817659|ref|YP_003432006.1| chromosome segregation ATPase [Hydrogenobacter thermophilus TK-6]
 gi|288787058|dbj|BAI68805.1| chromosome segregation ATPase [Hydrogenobacter thermophilus TK-6]
 gi|308751257|gb|ADO44740.1| chromosome segregation protein SMC [Hydrogenobacter thermophilus
           TK-6]
          Length = 1154

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 103/273 (37%), Gaps = 38/273 (13%)

Query: 7   IKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASY 61
           I+ + +  F++Y    + +         VG NG GK+NI +AISF   L+  +  R  + 
Sbjct: 5   IEKIVVEGFKSYGKGRVEIPLGPGFVGIVGPNGAGKSNIGDAISFALSLATAKTLRAKNL 64

Query: 62  ADVT-RIGSPS----FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVDE 115
           + +     S S    +     + EG   L D  I +  + D+  R   +IN  VIR  D 
Sbjct: 65  SYLIYTKDSDSSHHAYVEVHFKNEGTFPLEDSIIVISRKVDKDGRSIFRINGSVIRERDL 124

Query: 116 --------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERL 165
                   L ++     L   + R      +ERR+ ++    +   + + ++ + D   +
Sbjct: 125 KDLLAKAGLYENAYNIVLQGDVIRFLRMTPVERRKLIEEVAGIGEYEEKKQKALADLGEV 184

Query: 166 -MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            ++ R   L            +E QM  L   +   R      L + + +   K      
Sbjct: 185 ELKLREFRL--------LIDEMEVQMERLSEDVRKLRRY--RELENTLRDLHIKLLMKEA 234

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           K +          ++  AL EE  K+L + R+ 
Sbjct: 235 KATSQSI------ENLQALIEERKKELLEIREK 261


>gi|311063985|ref|YP_003970710.1| chromosome partition protein [Bifidobacterium bifidum PRL2010]
 gi|310866304|gb|ADP35673.1| Smc Chromosome partition protein [Bifidobacterium bifidum PRL2010]
          Length = 1220

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+NI++A++++      +  R  S
Sbjct: 1   MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   +I    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNTDHTLNIDYSEVTISRTIFRNGGSEYAINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILRADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           R +R      T         S I  Q+  LG +  I+R  
Sbjct: 176 RALRKLANTETNLSRLDDLLSEIRRQLGPLGRQARISRRA 215


>gi|310287121|ref|YP_003938379.1| chromosome segregation protein SMC [Bifidobacterium bifidum S17]
 gi|309251057|gb|ADO52805.1| chromosome segregation protein SMC [Bifidobacterium bifidum S17]
          Length = 1220

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+NI++A++++      +  R  S
Sbjct: 1   MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   +I    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNTDHTLNIDYSEVTISRTIFRNGGSEYAINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILRADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           R +R      T         S I  Q+  LG +  I+R  
Sbjct: 176 RALRKLANTETNLSRLDDLLSEIRRQLGPLGRQARISRRA 215


>gi|224282661|ref|ZP_03645983.1| Chromosome segregation ATPase [Bifidobacterium bifidum NCIMB 41171]
 gi|313139819|ref|ZP_07802012.1| chromosome segregation ATPase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132329|gb|EFR49946.1| chromosome segregation ATPase [Bifidobacterium bifidum NCIMB 41171]
          Length = 1220

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+NI++A++++      +  R  S
Sbjct: 1   MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   +I    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNTDHTLNIDYSEVTISRTIFRNGGSEYAINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D I        R F++     +  R        E
Sbjct: 121 LLDIQELLSDTGLGQQMHVIVGQGRLDAILRADPSGHRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           R +R      T         S I  Q+  LG +  I+R  
Sbjct: 176 RALRKLANTETNLSRLDDLLSEIRRQLGPLGRQARISRRA 215


>gi|296109742|ref|YP_003616691.1| chromosome segregation protein SMC [Methanocaldococcus infernus ME]
 gi|295434556|gb|ADG13727.1| chromosome segregation protein SMC [Methanocaldococcus infernus ME]
          Length = 1142

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 99/292 (33%), Gaps = 44/292 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63
           +K + +  F+++ SL L      T  VG NG GK+NI++AI F+   S  R  R   ++ 
Sbjct: 2   LKRIELKNFKSFKSLSLEIPKGFTAIVGPNGSGKSNIVDAILFVLGKSSARKLRANKFSS 61

Query: 64  VTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           +          +       E       IS K++   + +   ++  +       E+    
Sbjct: 62  LINYHKGRKAEYAEVTLFFESNGEEFGISRKVKKSGETAYYFIKNGEKRRLTKKEIIDFF 121

Query: 121 R-------ISWLVPSMDRIFSGLSMERRRFLD-----------------------RMVFA 150
           R              +  I +   +ERR+ +D                        ++  
Sbjct: 122 RRLKLLGDNIISQGDLLNIINMSPIERRKIIDELSGVSEFDEKKKKAEEELKKARELIEI 181

Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
           ID R      + +R        L +   ++     ++  + E   ++   R++ +N   +
Sbjct: 182 IDARISEVKSNLDR--------LKKEKEEAERYLELKQLLKEARYELTKKRIDYLNLEIN 233

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            + E ++K      +         +  +       +  +KL D   +D  ++
Sbjct: 234 NLKERIEKLEREKEEKIKKLKEIEEEIKKKKEEISKVLEKLKDSEVLDIYNK 285


>gi|311898545|dbj|BAJ30953.1| putative chromosome segregation protein SMC [Kitasatospora setae
           KM-6054]
          Length = 1222

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/210 (18%), Positives = 77/210 (36%), Gaps = 26/210 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKSLTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I         T          +N  V R
Sbjct: 61  MEDVIFAGTSGRPPLGRAEVSLTIDNTDGALPIDYSEVTITRTMFRNGGSEYALNGTVCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           + +R  + + T         + +  Q+  L
Sbjct: 176 KALRKLDAMQTNLNRVQDLVAELRRQLGPL 205


>gi|256379946|ref|YP_003103606.1| chromosome segregation protein SMC [Actinosynnema mirum DSM 43827]
 gi|255924249|gb|ACU39760.1| chromosome segregation protein SMC [Actinosynnema mirum DSM 43827]
          Length = 1194

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 82/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+L+A+ ++   +G    R   
Sbjct: 4   VHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVLDALRWVMGTQGAKDLRGGK 63

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 64  MEDVIFAGTSGRAPLGRAEVTLTIDNADGALPIEYTEVSITRRMFREGATEYEINGSSCR 123

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      ERR F++     +  R        E
Sbjct: 124 LMDIQELLSDSGIGREMHVIVGQGQLSAILESKPEERRAFIEEAAGVLKHR-----KRKE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R    +       +   + +  Q+  LG +  IAR  
Sbjct: 179 KALRKLEAMQANLTRLTDLTAELRRQLKPLGKQAEIARRA 218


>gi|229491402|ref|ZP_04385226.1| chromosome segregation protein SMC [Rhodococcus erythropolis SK121]
 gi|229321687|gb|EEN87484.1| chromosome segregation protein SMC [Rhodococcus erythropolis SK121]
          Length = 1195

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSGRAPLGRAEVTLTIDNADGALPIEYSEVSITRRMFRDGAGEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLAAILESRPEDRRAFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       S   + +  Q+  LG +  +AR  
Sbjct: 176 KAVRKLDSMQANLARLSDLTAELRRQLKPLGRQAEVARRA 215


>gi|320093874|ref|ZP_08025715.1| hypothetical protein HMPREF9005_0327 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979191|gb|EFW10693.1| hypothetical protein HMPREF9005_0327 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 448

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 103/289 (35%), Gaps = 48/289 (16%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++A++++      R  R  +
Sbjct: 1   MYLKSLTLRGFKSFASATTLRLEPGITCVVGPNGSGKSNVVDALAWVMGEQGARAMRGGN 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
            ADV   G+ S            ++  +GL DI     T      R      QIN    R
Sbjct: 61  MADVIFAGAGSRPALGRAQADLTIDNSDGLLDIEYSEVTISRTLFRGGGSEYQINGAPAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I S    ERR F++     +  R        E
Sbjct: 121 LLDVQELLSDTGMGRQMHVIVGQGQLDAILSSTPEERRGFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIE------AQMAEL--------GVKINIARVEMINA-- 207
           R ++           D++    ++       Q+  L           +  ARV    A  
Sbjct: 176 RALK------KLADMDANLVRVLDLTNEIHRQLGPLARQARTARRAHVIQARVRDARARL 229

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           L+  ++    + +        T     + +    + +E  A      R+
Sbjct: 230 LADDLVAARDRLDAHSASEEATARRRAQLEGELASAREGLAALEDQERQ 278


>gi|226305924|ref|YP_002765884.1| chromosome partition protein SMC [Rhodococcus erythropolis PR4]
 gi|226185041|dbj|BAH33145.1| chromosome partition protein SMC [Rhodococcus erythropolis PR4]
          Length = 1195

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSGRAPLGRAEVTLTIDNADGALPIEYSEVSITRRMFRDGAGEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLAAILESRPEDRRAFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       S   + +  Q+  LG +  +AR  
Sbjct: 176 KAVRKLDSMQANLARLSDLTAELRRQLKPLGRQAEVARRA 215


>gi|315445097|ref|YP_004077976.1| condensin subunit Smc [Mycobacterium sp. Spyr1]
 gi|315263400|gb|ADU00142.1| condensin subunit Smc [Mycobacterium sp. Spyr1]
          Length = 1194

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 100/283 (35%), Gaps = 28/283 (9%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASPTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTLTIDNSDNALPIEYSEVSITRRMFRDGAGEYEINGSRCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + + + +      +  I      +RR F++     +  R        E
Sbjct: 121 LADVQELLSDSGIGREMHVIVGQGKLSEILESRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R  + +       +   + +  Q+  LG +  +AR      + + + +   +     
Sbjct: 176 KAVRKLDSMAANLARLTDLTTELRRQLKPLGRQAEMARRA--QTIQADLRDARLRLAADD 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
           +      F D    ++    + +   +    R  +  +  T +
Sbjct: 234 LVARKAEFDDTDQAETTLRREHDELTERLQERAAELDAHETAV 276


>gi|126664800|ref|ZP_01735784.1| ATPase [Marinobacter sp. ELB17]
 gi|126631126|gb|EBA01740.1| ATPase [Marinobacter sp. ELB17]
          Length = 429

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 49/139 (35%), Gaps = 16/139 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASY- 61
           + +K + +  FR +         +  + VG NG GKT +L+AIS +  +   GFR     
Sbjct: 1   MNLKEIKLKNFRCFEEQSFQLHPEFNLIVGINGSGKTALLDAISVVIATWLLGFRNRPDK 60

Query: 62  ----------ADVTRIGSPSF---FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                       V +   P F   +    + EG     D+  +     +           
Sbjct: 61  KSLSTGDVRLKYVVKNDEPQFIESWPVTVKAEGTINDKDVRWERSKHSESGNTRYGNASE 120

Query: 109 VIRVVDELNKHLRISWLVP 127
           +I +  +L+  L     +P
Sbjct: 121 LISLAHDLDGKLGEDVSLP 139


>gi|317125425|ref|YP_004099537.1| condensin subunit Smc [Intrasporangium calvum DSM 43043]
 gi|315589513|gb|ADU48810.1| condensin subunit Smc [Intrasporangium calvum DSM 43043]
          Length = 1197

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 92/269 (34%), Gaps = 33/269 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYVKSLTLKGFKSFASATHLRLEPGITCIVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I         T          IN    R
Sbjct: 61  MEDVIFAGTAGRAPLGRAEVALTIDNTDGALPIDYTEVTIARTMFRNGGSDYSINGTPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDTVLRATPEERRGFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI-------NALSSLIMEYV 216
           R +R    +             I  Q+  LG +   AR   +         L  L  + V
Sbjct: 176 RALRKLETMEANLTRVHDLTGEIRRQLGPLGRQAETARRAAVIQTDARDARLRLLADDLV 235

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           Q  +    +++    L  +  +   A+ E
Sbjct: 236 QLTSTLEQEVADESALIQRRTEVEEAMAE 264


>gi|145224767|ref|YP_001135445.1| chromosome segregation protein SMC [Mycobacterium gilvum PYR-GCK]
 gi|145217253|gb|ABP46657.1| condensin subunit Smc [Mycobacterium gilvum PYR-GCK]
          Length = 1194

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 100/283 (35%), Gaps = 28/283 (9%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASPTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTLTIDNSDNALPIEYSEVSITRRMFRDGAGEYEINGSRCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + + + +      +  I      +RR F++     +  R        E
Sbjct: 121 LADVQELLSDSGIGREMHVIVGQGKLSEILESRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R  + +       +   + +  Q+  LG +  +AR      + + + +   +     
Sbjct: 176 KAVRKLDSMAANLARLTDLTTELRRQLKPLGRQAEMARRA--QTIQADLRDARLRLAADD 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
           +      F D    ++    + +   +    R  +  +  T +
Sbjct: 234 LVARKAEFDDTDQAETTLRREHDELTERLQERAAELDAHETAV 276


>gi|224477807|ref|YP_002635413.1| hypothetical protein Sca_2325 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422414|emb|CAL29228.1| hypothetical protein SCA_2325 [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 392

 Score = 74.6 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 57/383 (14%), Positives = 128/383 (33%), Gaps = 57/383 (14%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + I  + ++ FR++  +  L F+     FVG+N  GKT + +A+ F+  G+         
Sbjct: 1   MYISNMKLTNFRSFNGNNELQFNDGLNFFVGNNNCGKTTVFKAVEFIQNGK--------- 51

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                   F +     E      +I++++    D     +  N        EL K+    
Sbjct: 52  ----DKSEFITIGKENE------EIAVEITLSGDDIEGIVNNN--------ELKKYKNYI 93

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           +       I       +R   +  +     +    + +        N+       D +  
Sbjct: 94  YEKNETLNI-----TIKRSSKNDSIVQNGRKKDLDIKNIRTWNNEENQFENPTGIDKTIN 148

Query: 184 SSIEAQMAELGVKINIARV--------EMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
           +  +AQ     +K    R         ++IN+++        K     IK     F D  
Sbjct: 149 ALFDAQFVYSDIKNEEYRDFGKTKVMGKLINSITKDFQ--HSKVYKDLIKAHEKAFGDEG 206

Query: 236 FDQSFCALKEEYAKKLFDGR-KMDSMSRRTLIGPHRSDLI----VDYCDKAITIAHGS-- 288
              S    ++E  K L +   + +   +  L  P  ++ +    ++  +  IT       
Sbjct: 207 LKSSLHDTEKELQKILGEQYGEAEVEFKFEL--PDMNNFLKHGTINLTENNITTEVSEKG 264

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIF 346
           TG Q+ + + +   ++ +++       +  +DE    L    +  +      I   +Q+F
Sbjct: 265 TGMQRALAMSLIQVYSNIVNKENAKQLLFFIDEPETFLHPKAQAKIINAFRKISRETQVF 324

Query: 347 MTGTDKSVFDSLN---ETAKFMR 366
           +T     +    +   +  K  +
Sbjct: 325 ITTHSPYLLKQFDNDIDDIKIFK 347


>gi|254776224|ref|ZP_05217740.1| chromosome segregation protein SMC [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 576

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 215


>gi|300783823|ref|YP_003764114.1| chromosome segregation ATPase [Amycolatopsis mediterranei U32]
 gi|299793337|gb|ADJ43712.1| chromosome segregation ATPase [Amycolatopsis mediterranei U32]
          Length = 1200

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 94/285 (32%), Gaps = 37/285 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+L+A+ ++   +G    R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVLDALRWVMGTQGAKDLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTAGRAPLGRAEVTLTIDNADGALPIEYSEVSITRRMFRDGASEYEINGDRCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      ERR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGQLSAILESKPEERRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----------INALSSLIM 213
           + +R    +           + +  Q+  LG +  IAR             +  L+  ++
Sbjct: 176 QTLRKLANMQGNLDRLGDLTTELRRQLKPLGKQAEIARKAQSVQSELRDSRLRLLADDLV 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
                                + +Q    +  E   +L      D
Sbjct: 236 TQRTAIAREEADEKSARQRRAEVEQHLEIVSAE-ETELEASLAED 279


>gi|302525132|ref|ZP_07277474.1| chromosome segregation protein SMC [Streptomyces sp. AA4]
 gi|302434027|gb|EFL05843.1| chromosome segregation protein SMC [Streptomyces sp. AA4]
          Length = 1208

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 26/221 (11%)

Query: 4   RIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRA 59
            + +K L +  F+++AS   L F+   T  VG NG GK+N+L+A+ ++   +G    R  
Sbjct: 8   HVHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVLDALRWVMGTQGAKDLRGG 67

Query: 60  SYADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVI 110
              DV   G+              ++  +G   I     +   R  R      +IN    
Sbjct: 68  KMEDVIFAGTAGRAPLGRAEVTLTIDNADGALPIEYAEVSITRRMFRDGASEYEINGDRC 127

Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           R++D         + + + +      +  I      ERR F++     +  R        
Sbjct: 128 RLMDVQELLSDSGIGREMHVIVGQGQLSAILESKPEERRAFIEEAAGVLKHR-----KRK 182

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           E+ +R  N +       +   + +  Q+  LG +  IAR  
Sbjct: 183 EQTLRKLNNMQGNLDRLTDLTTELRRQLKPLGKQAEIARKA 223


>gi|255326581|ref|ZP_05367658.1| chromosome segregation protein SMC [Rothia mucilaginosa ATCC 25296]
 gi|255296321|gb|EET75661.1| chromosome segregation protein SMC [Rothia mucilaginosa ATCC 25296]
          Length = 1102

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 95/288 (32%), Gaps = 33/288 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +  L +  F+++AS     F       VG NG GK+N+L+A++++      +  R  S
Sbjct: 1   MHLMSLTLRGFKSFASATTFEFTPGINAVVGPNGSGKSNVLDALAWVMGEQGAKSLRGGS 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-----------------SVRCL 103
             DV   GS    S         G A +++  +  D                        
Sbjct: 61  MKDVIFAGSGEAGSGDGAQRAPLGRAKVTLTFDNSDGTLSIPADRVQISRTMFRSGGSEY 120

Query: 104 QINDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           +IN    R+ D         L + + +      +D +    + +RR  +++    +   +
Sbjct: 121 EINGSPARLADIQDLLSEAGLGQQMHVLVGQGQLDAVLHATAQQRRDMIEQAAGVVK--Y 178

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--VEMINALSSLIM 213
           RRR     R +      +T      +   S    ++E       AR     I  L ++++
Sbjct: 179 RRRQEKTSRKLESVASNVTRLSDLVAELDSQLQPLSEQAESAATARQLQARIRQLEAVLL 238

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                        +L   ++G         + E A+      + +   
Sbjct: 239 ARQLGVLQAEQAQALASEVEGTRRAETLKEQLEAARAASAKHQQEQNR 286


>gi|320534862|ref|ZP_08035279.1| RecF/RecN/SMC protein [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320132960|gb|EFW25491.1| RecF/RecN/SMC protein [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 395

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 26/210 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L I  F+++AS   L  +   T  VG NG GK+N+++A++++      +  R  S
Sbjct: 1   MHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGAKNLRGGS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
            ADV   G+ S            ++  +G+  I    + +            +IN    R
Sbjct: 61  MADVIFAGAGSRPALGRAEVSLTIDNTDGVLPIDYTEVTISRTLFRGGGSEYRINGSPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D + S    +RR F++     +  R        E
Sbjct: 121 LLDVQELLSDTGLGRQMHVIVGQGQLDAVLSATPEDRRGFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           R +R    +  +    S     +  Q+  L
Sbjct: 176 RALRKLESMAADLARVSDLAQELRRQLGPL 205


>gi|254392453|ref|ZP_05007633.1| chromosome segregation protein [Streptomyces clavuligerus ATCC
           27064]
 gi|197706120|gb|EDY51932.1| chromosome segregation protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 665

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 101/317 (31%), Gaps = 50/317 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 8   VHLKAMTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 67

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 68  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 127

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 128 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 182

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMIN---- 206
           + +R    +             +  Q+  LG               +  AR+ ++     
Sbjct: 183 KALRKLESMKANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 242

Query: 207 ALSSLIMEYVQKE-------NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            L   +   +  E            +L      + + +    AL     +      ++  
Sbjct: 243 RLQRALRAEIADEAALKARKEAAEARLKAALAREAELEGEVRALVPRLQRAQQTWYELSQ 302

Query: 260 MSRRTLIGPHRSDLIVD 276
           ++ RT      ++  V 
Sbjct: 303 LAERTRGTVSLAEARVK 319


>gi|118466622|ref|YP_882949.1| chromosome segregation protein SMC [Mycobacterium avium 104]
 gi|118167909|gb|ABK68806.1| chromosome segregation protein SMC [Mycobacterium avium 104]
          Length = 1196

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 215


>gi|54026138|ref|YP_120380.1| putative chromosome segregation protein [Nocardia farcinica IFM
           10152]
 gi|54017646|dbj|BAD59016.1| putative chromosome segregation protein [Nocardia farcinica IFM
           10152]
          Length = 1203

 Score = 74.2 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 101/268 (37%), Gaps = 37/268 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGL-----ADISIKLETRDDRSVRCLQINDVVI 110
             DV   G+              ++  +G      A++SI      D +    +IN    
Sbjct: 61  MQDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIDYAEVSITRRMFRDGAG-EYEINGNSC 119

Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           R++D         + + + +      +  I      +RR F++     +  R        
Sbjct: 120 RLMDVQELLSDSGIGREMHVIVGQGQLSAILESRPEDRRAFVEEAAGVLKHR-----KRK 174

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           E+ +R    +       +   + +  Q+  LG      R   +   +  +   ++     
Sbjct: 175 EKAVRKLEAMQANLARLTDLTTELRRQLKPLG------RQAEVARRAQTVQADLRD---A 225

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            ++L+    +  + + +    KE YA++
Sbjct: 226 RLRLAADDLVTRRAELASQQSKEAYARE 253


>gi|305663212|ref|YP_003859500.1| SMC domain protein [Ignisphaera aggregans DSM 17230]
 gi|304377781|gb|ADM27620.1| SMC domain protein [Ignisphaera aggregans DSM 17230]
          Length = 492

 Score = 74.2 bits (181), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +R+ ++ + I  F++   L L       + VG N  GKTNILEA+ FL
Sbjct: 12 DRVFVRRIYIENFKSIKHLELELSPGVNVLVGPNASGKTNILEALDFL 59


>gi|239928699|ref|ZP_04685652.1| chromosome associated protein [Streptomyces ghanaensis ATCC 14672]
          Length = 499

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 99/296 (33%), Gaps = 49/296 (16%)

Query: 2   TNRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFR 57
           ++ + +K L +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R
Sbjct: 12  SDGVHLKALTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLR 71

Query: 58  RASYADVTRIGSP-----SFFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDV 108
                DV   G+              ++  +G   I                   QIN  
Sbjct: 72  GGKMEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYSEVTITRIMFRNGGSEYQINGD 131

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             R++D         + + + +      +D +     M RR F++     +  R      
Sbjct: 132 TCRLLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----K 186

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINA 207
             E+ +R  + +             +  Q+  LG               +  AR+ ++  
Sbjct: 187 RKEKALRKLDAMQANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLAD 246

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
               + E ++ E      L           +   A + E  K L     ++   RR
Sbjct: 247 DLVRLREALEAEIADEAAL----------KERKEAAERELGKALRREALLEEEVRR 292


>gi|302522142|ref|ZP_07274484.1| chromosome segregation protein SMC [Streptomyces sp. SPB78]
 gi|302431037|gb|EFL02853.1| chromosome segregation protein SMC [Streptomyces sp. SPB78]
          Length = 1298

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 97/279 (34%), Gaps = 29/279 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKAMTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I         T         QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTIARTMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEASGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY-VQKENFP 222
           + +R  + +             +  Q+  LG +  +AR      + + + +  ++  +  
Sbjct: 176 KALRKLDAMRANLARVQDLTDELRRQLKPLGRQAAVARRA--AVIQADLRDARLRLLSDD 233

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            + L      +   + +    KE     L      ++  
Sbjct: 234 LVTLRRALDAEVADEAALKERKEAAESALKTALAREARL 272


>gi|145593842|ref|YP_001158139.1| chromosome segregation protein SMC [Salinispora tropica CNB-440]
 gi|145303179|gb|ABP53761.1| condensin subunit Smc [Salinispora tropica CNB-440]
          Length = 1198

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 26/222 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++AI+++      +  R   
Sbjct: 1   MHLKSLTVKGFKSFASATTLKLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTAGRAPLGRAEVTLTIDNTDGALPIEYTEVSITRRMFRSGESEYEINGDSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + I      +D +      +RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHIIVGQGRLDGMLHAKPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
           + +R  + + T     +     +  Q+  LG +  +AR   +
Sbjct: 176 KALRKLDAMQTNLNRLTDLTVELRRQLKPLGRQAEVARRAAV 217


>gi|323187168|gb|EFZ72482.1| hypothetical protein ECRN5871_4551 [Escherichia coli RN587/1]
          Length = 578

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 124/389 (31%), Gaps = 76/389 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  + I  FR+   L           +G    GKT IL+AI      R  R  S++D 
Sbjct: 2   VRVCKVEIRNFRSIRLLTWQPSPGLNCLIGPGDSGKTTILDAIDLCLGAR--RNVSFSD- 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  FF       G++    ISI L       V         ++ ++    +L+   
Sbjct: 59  -----TDFF-------GLDVSQPISITLTLGSLPDV---------LKTMETYGNYLQA-- 95

Query: 125 LVPSMDRIFSGLSME-------RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
              S   +               R  +D  +   +P         E L   RN    +  
Sbjct: 96  -FNSATGLIQEEPQLGLETVLCLRLSVDSEL---EPNWTLVSQRAEALGHERNLAWKDR- 150

Query: 178 FDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                     A++       ++ AR  ++N L+         E  P++   L+       
Sbjct: 151 -----LLIAPARLGTYASSNLSWARGSVLNRLT---------EERPNLGAELSNAARQAR 196

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL---IVDYCDKAITIAHGS----- 288
                    + A  L    +  +     + G  ++ L    V   D AI + + +     
Sbjct: 197 TSFGGQASAQLAATLDVVTQKANELGVPVGGQTQALLDAHAVSIGDGAIALHNAAGVPLR 256

Query: 289 ---TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343
              TG  ++++ G+  A A+        A + L+DE+   L+  +   L   +    +  
Sbjct: 257 SLGTGSSRLLVAGMQRAAAQ-------RASVALVDEVEYGLEPHRLTRLLNSLGARETPP 309

Query: 344 --QIFMTGTDKSVFDSLNETAKFMRISNH 370
             Q+F+T         LN   +   +  H
Sbjct: 310 PLQVFLTTHSPVAVRELNGN-QLFVVRGH 337


>gi|307353061|ref|YP_003894112.1| SMC domain-containing protein [Methanoplanus petrolearius DSM
           11571]
 gi|307156294|gb|ADN35674.1| SMC domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 642

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 59/398 (14%), Positives = 119/398 (29%), Gaps = 62/398 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFD--AQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRAS 60
           + +  L I+ FR Y  + +  D     T+FVG+N  GKT I++AI +    R   + +  
Sbjct: 1   MHLSNLKITNFRCYDEIGIDLDIKKGLTVFVGENDSGKTAIIDAIRYAIGTRDQEWNKIK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADI----SIKLETRDDRSVRCLQINDVVIRVVDEL 116
             D     +        + E +           +  E   +     L  N    + +   
Sbjct: 61  DTDFYNEDTSREIKITCKFEELSQNESGIFLQYLTYEQTGESVKEVLYFNWSAKKKIIGK 120

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL---- 172
            + +           I +        F +     +   + + + D E  M  R       
Sbjct: 121 REFISTEISS----GIKADGPS----FNEDTRELLKTTYLKPLRDAENAMSSRKNSRLAQ 172

Query: 173 -LTEGYFDSSWCSSIEAQ----------MAELGVKINIARVEMINALSSLIMEYVQKENF 221
            L       S     E +          +A L   + I    +      +      K   
Sbjct: 173 ILKNIDSIKSGKDKYEKESDLKDLSVLGIANLADSLLINHKGIKETKEQIDNNLSDKFLL 232

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
              K+     + GK + +   LK+   K   +  K +  S    +G +            
Sbjct: 233 KQDKIQSNIEIKGKTNNTDQQLKQMLEKLTLNIEKEELCSGTLGLGTNN----------- 281

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-- 339
                       ++ +        L+        +LLL+E  +H+   ++  + + +   
Sbjct: 282 ------------LLYMAC---ELLLLQQEDDGNKMLLLEEPESHIHVQRQLKILKSLQNE 326

Query: 340 --DIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
                 QI  T T   +  S+ +    + I N +A  +
Sbjct: 327 AIKNNVQIL-TTTHSPILASVIKLENVVLIQNGKAFSL 363


>gi|297626604|ref|YP_003688367.1| Chromosome partition protein Smc [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922369|emb|CBL56941.1| Chromosome partition protein Smc [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 1181

 Score = 73.8 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 105/283 (37%), Gaps = 29/283 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+NI++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASATTLAFEPGITAIVGPNGSGKSNIVDALAWVMGEQGAKHLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +G+  I     T      R       IN    R
Sbjct: 61  MDDVIFAGTAGRPPLGRAEVTLTIDNTDGVLPIDYTEVTISRTLFRAGGSEYAINGHTAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D+I       RR F++     +  R R+      
Sbjct: 121 LLDVQELLSDTGMGREMHVIVGQGQLDQILQATPEIRRGFIEEAAGVLKHRRRKEKAA-R 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS-SLIMEYVQKENFP 222
           +L   R  L       S   S I  Q+  LG +  +AR   +           +  ++  
Sbjct: 180 KLESTRQNL----ERLSDLISEIRRQLKPLGRQAAVARKAAVVQAELRDARSRLLADDLT 235

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
             +L+L    + +  Q    L+ +   +L   R  ++ + + L
Sbjct: 236 AARLALASEQENQAGQE--KLRADARARLEQARSREAEAEQAL 276


>gi|239982555|ref|ZP_04705079.1| chromosome segregation protein [Streptomyces albus J1074]
 gi|291454397|ref|ZP_06593787.1| chromosome segregation protein SMC [Streptomyces albus J1074]
 gi|291357346|gb|EFE84248.1| chromosome segregation protein SMC [Streptomyces albus J1074]
          Length = 553

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 96/290 (33%), Gaps = 42/290 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MHLKAMTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I                   QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMINALSS 210
           + +R  + +             +  Q+  LG               +  AR+ ++     
Sbjct: 176 KALRKLDAMQANLARVQDLTEELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLV 235

Query: 211 LIMEYVQKENFPHIKLSL---TGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            +   +  E     +L     T   + K  Q   A  E   ++L    + 
Sbjct: 236 TLTRALSAEIADEAELKRRRDTAEAELKAAQRREATLEGEVRRLAPRLQR 285


>gi|296171398|ref|ZP_06852731.1| SMC structural maintenance of chromosomes partitioning protein
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295894173|gb|EFG73932.1| SMC structural maintenance of chromosomes partitioning protein
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 373

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGASEYEINGASCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 215


>gi|256824939|ref|YP_003148899.1| condensin subunit Smc [Kytococcus sedentarius DSM 20547]
 gi|256688332|gb|ACV06134.1| condensin subunit Smc [Kytococcus sedentarius DSM 20547]
          Length = 1217

 Score = 73.8 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 76/211 (36%), Gaps = 26/211 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +  L +  F+++AS   L  +   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYVTSLTLKGFKSFASSTKLELEPGITCIVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +G   I     T      R       IN    R
Sbjct: 61  MEDVIFAGTSGRAPLGRAEVAMTIDNTDGALPIDYSEVTISRTMFRSGGSEYAINGTPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGQLDAVLRATPEERRGFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           + +R  + +  +        + I  Q+  LG
Sbjct: 176 KALRKLDAMEGDLARVRDLTAEIRRQLGPLG 206


>gi|119717497|ref|YP_924462.1| condensin subunit Smc [Nocardioides sp. JS614]
 gi|119538158|gb|ABL82775.1| condensin subunit Smc [Nocardioides sp. JS614]
          Length = 1188

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASSTTLQLEPGITCIVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +G   I     T      R       IN    R
Sbjct: 61  MEDVIFAGTSGRPPLGRAEVLLTIDNSDGALPIEYAEVTISRTMFRSGGSEYAINSQPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I      +RR F++     +  R        E
Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGQLDSILHATPEDRRGFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  +             + I  Q+  LG +  +AR  
Sbjct: 176 KALRKLDSTEGNLTRLGDLLTEIRRQLKPLGRQAEVARKA 215


>gi|188576462|ref|YP_001913391.1| hypothetical protein PXO_00630 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188520914|gb|ACD58859.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 535

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 63/390 (16%), Positives = 119/390 (30%), Gaps = 66/390 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + I  F+++  L L  ++   + VGDN VGK+ +LEAI  +  G+   R    ++
Sbjct: 10  MPIERIVIDNFKSFRHLDLPLNSHMNLVVGDNEVGKSTLLEAIHAVVTGQLHGRNLAYEL 69

Query: 65  T--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           T      P+     A ++     +   I +E                   +  L      
Sbjct: 70  TPYLFHQPTVNEYLAALQAGTPASPPRIAIEAYLGSDA-----------ALASLRGTNNS 118

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRGRNRLLTEGY 177
                +  R+   L+ + R   +  +         P     +  +               
Sbjct: 119 LGFDTAGIRLLVELNDDYREEFNAYLQQHQGVVSLPVEYYTVRWYSFA--HNGVTARSIP 176

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
           FDS+   +        G+K        I  +    +   Q+ +   + LS         +
Sbjct: 177 FDSTIIDT-------HGIKTLSGADRYIAGIIEQALTPAQRVS---LSLSFRRMRQSFSE 226

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRR--------------TLIGPHRSDLIVDYCDKAIT 283
           ++  A    Y  +       D   R               T + P+  +L      K   
Sbjct: 227 EADVAAINAYLTE----HTGDISHRTLTVGVDTSPRSTWETSLSPYLDELPFTQAGK--- 279

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG- 342
                 GEQ    V + LA      +  G A +LL++E   HL       L   +  +  
Sbjct: 280 ------GEQ--SAVKMKLA-----MHAAGAAHVLLIEEPENHLSFSSMTQLIDKIAALSS 326

Query: 343 -SQIFMTGTDKSVFDSLNETAKFMRISNHQ 371
             Q+ +      V + L      +  +  Q
Sbjct: 327 TQQVVIATHSSFVLNKLGVDNVILFSAQGQ 356


>gi|21902529|ref|NP_663774.1| Bartomin [Rattus norvegicus]
 gi|21717411|dbj|BAC02935.1| barmotin [Rattus norvegicus]
          Length = 1184

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 105/293 (35%), Gaps = 34/293 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+K L IS F+++A    + F    T  VG NG GK+NI+EAI ++   +     R   
Sbjct: 1   MKLKSLEISGFKSFADKTVIEFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKDLRGTK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
            AD+   G+ +  +   A V       D  IK +  + R  R L        QIN V  R
Sbjct: 61  MADIIFGGTNTRPALNRAEVSMTFDNTDHYIKSDFSEIRITRKLYRSGESSYQINGVESR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    +RR  ++ +      ++++     +
Sbjct: 121 LRDIHELFMDTGLGRESFSIISQGRVESIFNAKPEDRRSIIEEVAGVY--QYKQNKQRAQ 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN-----IARVEMINALSSLIMEYVQK 218
           + ++     L                +AE   +        AR + ++ L   + +    
Sbjct: 179 KELQQTTDNLARVADIIHEIEGRIEPLAEQSAQATDYIAQKARFDTLDRLRLALTQQALV 238

Query: 219 ENFPHIKLSLT------GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
           E        LT             D     L ++   ++ + +  D++    L
Sbjct: 239 EQKAQATAELTRQDAQVNHTKTTVDALNQTLAQKRQARVNEQKTRDALQATIL 291


>gi|238063287|ref|ZP_04607996.1| chromosome segregation protein SMC [Micromonospora sp. ATCC 39149]
 gi|237885098|gb|EEP73926.1| chromosome segregation protein SMC [Micromonospora sp. ATCC 39149]
          Length = 724

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 102/275 (37%), Gaps = 29/275 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++AI+++      +  R   
Sbjct: 1   MYLKSLTVKGFKSFASATTLKLEPGITCVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTAGRAPLGRAEVTLTIDNTDGALPIEYTEVSITRRMFRSGESEYEINGDSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + I      +D +      +RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHIIVGQGRLDGMLHAKPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R  + + T     +   + +  Q+  LG +  +AR     A+ + + +   +     
Sbjct: 176 KALRKLDAMQTNLNRLTDLTAELRRQLKPLGRQAEVARRA--AAIQANLRDARLRLLADD 233

Query: 224 IK-LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           +  L  T   +   + +    ++E   +  + +  
Sbjct: 234 LHTLRATLNREIADESAARERRQEVEAEHSEVQAR 268


>gi|38234115|ref|NP_939882.1| putative chromosome partition protein [Corynebacterium diphtheriae
           NCTC 13129]
 gi|28375459|emb|CAD66593.1| SMC protein [Corynebacterium diphtheriae]
 gi|38200377|emb|CAE50065.1| Putative chromosome partition protein [Corynebacterium diphtheriae]
          Length = 1161

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/274 (17%), Positives = 96/274 (35%), Gaps = 33/274 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A+S++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALSWVMGEQGAKNLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGAGDRKPLGRAEVTLTIDNSDGALPIEYTEVSVTRRMFRDGGGEYEINGHKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      + +I      +RR F++     +  R        E
Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEDRRAFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           +    R  +  +   D      + +  Q+  L  +   AR      + S + +   +   
Sbjct: 176 KA--QRKLVGMQANLDRLSDLTAELGKQLKPLARQAEAARKA--ATIQSEVRDARLRIAG 231

Query: 222 PHIKLSLTGFLDGKF-DQSFCALKEEYAKKLFDG 254
             I    +   D +    S     EE  ++L + 
Sbjct: 232 YQIHSLASSLKDAQSHHDSIAEKLEEVTEQLEEA 265


>gi|253584165|ref|ZP_04861363.1| nuclease sbcCD subunit C [Fusobacterium varium ATCC 27725]
 gi|251834737|gb|EES63300.1| nuclease sbcCD subunit C [Fusobacterium varium ATCC 27725]
          Length = 448

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 102/281 (36%), Gaps = 27/281 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  +++  +R +  L + FD+   + +G+NG GK++ILEAI +       R  +  + 
Sbjct: 1   MKINRIHLENYRIHDKLDVEFDSGINLLLGENGKGKSSILEAIGYALFDSELRGGNQREA 60

Query: 65  TRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRS--------VRCLQINDVVIRVVD 114
            + G  S      F  ++G + +    I   T   +          +  +I ++     D
Sbjct: 61  IKYGKKSAKIEIEFTGIDGEDYIVTRKIPGSTSIYKKDNPDFQLIGKEDRIRELCGIKGD 120

Query: 115 ELNKHLRISWL-VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
               +  +           F     ER +  ++ VF  D  +++    + R     NR  
Sbjct: 121 LKGIYDNVIVAKQNEFISSFKEKDNEREKIFNK-VFNTD-IYKKIYEGYSR--DAVNRYE 176

Query: 174 TEGYFDSSWCSSIEAQMAELG------------VKINIARVEMINALSSLIMEYVQKENF 221
            +   + S   +I   M +               K   + + ++N   S + E++   N 
Sbjct: 177 KDIEIERSSMENIAEIMEDPADIKEKLEFEKGRAKEYNSSLALLNEEKSKVKEFLNSYNA 236

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            +I++           +S     EE+ K     ++ +   +
Sbjct: 237 LNIEIEKLTGEINALSESIKNKNEEFTKVANSIKESEISEK 277


>gi|183981798|ref|YP_001850089.1| chromosome partition protein Smc [Mycobacterium marinum M]
 gi|183175124|gb|ACC40234.1| chromosome partition protein Smc [Mycobacterium marinum M]
          Length = 1200

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 215


>gi|148272541|ref|YP_001222102.1| putative chromosome segregation ATPase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830471|emb|CAN01406.1| putative chromosome segregation ATPase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 1251

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 118/319 (36%), Gaps = 31/319 (9%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A      F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFAQPTTFQFETGVTCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS-IKLETRD---DRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I   ++  R            IN    R
Sbjct: 61  MEDVIFAGTSTRGPLGRAEVTLTIDNADGALPIDYTEVAIRRTLFRNGGSEYAINGTSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDVQELLSDSGLGREMHVIVGQGRLDNVLRATPEERRGFIEEAAGILKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV-EMINALSSLIMEYVQKENFP 222
           R +R    +       +     I  Q+  LG +  +AR  + + A+       +  +   
Sbjct: 176 RTLRKLEGMQANLTRLNDLAGEIRRQLKPLGRQAEVARQAQTVAAVVRDARARLVADEVV 235

Query: 223 HIKLSLTGFLDGKFDQSFCA--LKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
            ++ +L      + +++     L+E+  +  +   R ++      + G  R+   ++   
Sbjct: 236 TLRRALAEHTRTEEERTTERMVLQEKLDRAVIRSERIVEEQEGDEVDGARRTAFALEQVQ 295

Query: 280 KAITIAHGSTGEQKVVLVG 298
           + +     S  +Q++ L+G
Sbjct: 296 ERLR-NLLSLAQQRLALLG 313


>gi|328885699|emb|CCA58938.1| hypothetical protein SVEN_5652 [Streptomyces venezuelae ATCC 10712]
          Length = 612

 Score = 73.4 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 74/400 (18%), Positives = 129/400 (32%), Gaps = 65/400 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           ++++ + +  FR   S  ++ D  H++ VG N VGK+ + E +   L P R FRR    +
Sbjct: 1   MQVRRVVLENFRGVKSGTILLD-GHSLLVGSNSVGKSTVCEGLELVLGPERMFRRPVVDE 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--QINDVVIRVVDELNKH-- 119
               G       +   EG      I + L    D + R     +     +  D L+    
Sbjct: 60  YDFYG-----GCYQEREGKLPEVRIEVVLTNLSDAAERRFGSHLRRWSAQTSDFLDMVPA 114

Query: 120 -----------LRISWL---VPSMDRIFSGL----SMERRRFLDRMVFAI---------- 151
                      L + +L    P  D    G            LD     +          
Sbjct: 115 AIEDAETGEWCLPVVFLGRYDPQEDDFIGGTFFAHPESVPDGLDGEESGLGAGLKSFTRE 174

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
           D RH   +  + R  R  NR LT      S   +I    AEL   +    +  +  ++  
Sbjct: 175 DKRHCGFL--YLRPNRTGNRALTFQRG--SLLDTIVRLEAELAGPLWEKALRDLEQVAVA 230

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR--TLIGPH 269
             E    +    I+  +  F+          L+   A +L      + +     T  GPH
Sbjct: 231 AAESGFGKIRTEIRDRVDRFVSLGDTADPVDLQ---ASELTREHLREVLRLFIATQPGPH 287

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDE 328
                      A+     STG   +++  +       I+   G    I  ++E    L  
Sbjct: 288 -----------AVPFNRLSTGSLNLLVFAL----LTYIAELKGDKSVIFAMEEPEIALPP 332

Query: 329 DKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
             +  L   V     Q+ +T     V +   E ++ + I+
Sbjct: 333 HAQRRLIDFVVKRMGQVIVTSHSPYVIEKF-EPSRIVVIN 371


>gi|238917709|ref|YP_002931226.1| putative ATP-dependent endonuclease of the OLD family [Eubacterium
           eligens ATCC 27750]
 gi|238873069|gb|ACR72779.1| putative ATP-dependent endonuclease of the OLD family [Eubacterium
           eligens ATCC 27750]
          Length = 568

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 61/371 (16%), Positives = 126/371 (33%), Gaps = 69/371 (18%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +R+ I+ + I  F+ Y    +  +    I VGDN  GK+ ILEAI+    G         
Sbjct: 22  HRMFIRKVKIHNFKCYRDFEITLEEGLNIVVGDNEAGKSTILEAINLALTG--------- 72

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                           + G     +IS  +  ++      + +    I     L      
Sbjct: 73  ---------------IISGKSIWNEISQYIFNKEAVDEYIVSLGTAPIA----LPYITIE 113

Query: 123 SWLVPSMDRIFSGLS-MERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRN-RLLTEGYF 178
            +     + + +G +  +R    +   F  A + ++     ++E L++ RN + L   Y+
Sbjct: 114 IFFGGDENPLMNGDANSDRDNSAEGFCFKIAFNDKYAD---EYEALVQQRNVKSLPIEYY 170

Query: 179 DSSWC----SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           D +W      +I  +       +  +      + + L +  + K +     ++       
Sbjct: 171 DITWTTFARDAITTRSIPYKSSLIDSSEYRYKSGNDLYLSRIIKGSLEPEDITSIAQAHR 230

Query: 235 KF------DQSFCALKEEYAKKLFDGRKM-----DSMSRR---TLIGPHRSDLIVDYCDK 280
           K       D S  A+  +  +      K      + +++      +     ++   Y  K
Sbjct: 231 KMRDTFINDPSIEAINNKINQDASLTDKKIALSVELVTKNAWENSLVTQLDEIPFHYVGK 290

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                    GEQ      +      L   T+  A I+LL+E   HL   + N L + +++
Sbjct: 291 ---------GEQ-----CVVKTELALAKRTSQNASIILLEEPENHLSHTRLNQLIKCISE 336

Query: 341 --IGSQIFMTG 349
                QI ++ 
Sbjct: 337 QYAEKQILIST 347


>gi|22297672|ref|NP_680919.1| hypothetical protein tll0128 [Thermosynechococcus elongatus BP-1]
 gi|22293849|dbj|BAC07681.1| tll0128 [Thermosynechococcus elongatus BP-1]
          Length = 920

 Score = 73.4 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 88/283 (31%), Gaps = 39/283 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRR 58
           ++I+ L +  F+ +      F     +  G+NG GKT++ EAI+++        G GF  
Sbjct: 1   MEIQRLTLKNFKTHRDRTFEFMPGVNVICGENGAGKTSLFEAIAWVLFDARSGYGSGF-- 58

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADI-----------------SIKLETRDDRSVR 101
             +  + R G+    +    +   +G + I                  + L  R+D    
Sbjct: 59  --HKAIIRRGTQRAEAIVQFISAADGRSYIVRRNTQTGYSIVDPQVGELGLPLREDVHAW 116

Query: 102 CLQINDVVIRVVDELNKHLRISWLVPS--MDRIFSGLSMERRRFLD--RMVFAIDPRHRR 157
             +   + IR    L         +P   M   F     +RR+  +    V         
Sbjct: 117 LQE--HLGIRSAFPLRDLFEQIIGIPQGMMTADFLKPPAQRRQIFEPILQVSDYRQAFDN 174

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSS---IEAQMAELGVKINIARVEMINALSSLIME 214
            +            L  +    +   ++    E Q   L  ++   R      L      
Sbjct: 175 ALALVNFSQEQVASLERQLALQNQELATRSQYEQQATALAAELERDRQRC-EELRQECQA 233

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
              K+      +     L    ++    L+++  ++L   R+ 
Sbjct: 234 LAAKKQEYEAAVETLNRLQQTCERLEAQLRQQ--EELCRDRQR 274


>gi|332343180|gb|AEE56514.1| hypothetical protein UMNK88_1917 [Escherichia coli UMNK88]
          Length = 578

 Score = 73.0 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 118/391 (30%), Gaps = 80/391 (20%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  + I  FR+   L           +G    GKT IL+AI      R  R  S++D 
Sbjct: 2   VRVCKVEIQNFRSIRLLTWQPSPGLNCLIGPGDSGKTTILDAIDLCLGAR--RNVSFSD- 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  FF       G++    ISI L                 +R +D    +L+   
Sbjct: 59  -----TDFF-------GLDVTQPISITLTLGSLPD---------PLRAMDAYGNYLQA-- 95

Query: 125 LVPSMDRIFSGLSM--------ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              S+  +               R R +D  +   +P      +  E L + RN    + 
Sbjct: 96  -FNSVTGLVQEEPQFGLETVLCLRLR-VDSEL---EPNWTLVSLRGEALGQERNLAWKDR 150

Query: 177 YFDSSWCSSIEAQMAELG-VKINIARVEMINALSS----------LIMEYVQKENFPHIK 225
                      A++       ++ AR  ++N L+                 +        
Sbjct: 151 ------LLIAPARLGTYASSNLSWARGSVLNRLTEERPNLGAELSNAARQARTSFGGQAA 204

Query: 226 LSLTGFLDG--KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
           + L   LD   +             + L D   +        +          +    + 
Sbjct: 205 VQLAATLDVVTQKANELGVPVGGRTQALLDAHAVSIGDGAIAL----------HNSAGVP 254

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
           +    TG  ++++ G+  A A+        A + L+DE+   L+  +   L   +    +
Sbjct: 255 LRSLGTGSSRLLVAGMQRAAAQ-------RASVALVDEVEYGLEPHRLTRLLNSLGARET 307

Query: 344 ----QIFMTGTDKSVFDSLNETAKFMRISNH 370
               Q+F+T         LN   +   +  H
Sbjct: 308 PPPLQVFLTTHSPVAVRELNGN-QLFVVRGH 337


>gi|226365989|ref|YP_002783772.1| chromosome partition protein SMC [Rhodococcus opacus B4]
 gi|226244479|dbj|BAH54827.1| chromosome partition protein SMC [Rhodococcus opacus B4]
          Length = 1201

 Score = 73.0 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIDYSEVSITRRMFRDGAGEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLAAILESRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KAVRKLDAMQANLARLNDLTAELRRQLKPLGRQAEVARRA 215


>gi|257469919|ref|ZP_05634011.1| exonuclease SBCC [Fusobacterium ulcerans ATCC 49185]
 gi|317064148|ref|ZP_07928633.1| exonuclease SBCC [Fusobacterium ulcerans ATCC 49185]
 gi|313689824|gb|EFS26659.1| exonuclease SBCC [Fusobacterium ulcerans ATCC 49185]
          Length = 932

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +KI  +++  +R +  L + FD+   + +G+NG GK++ILEAI +       R  +  + 
Sbjct: 1  MKINRIHLENYRIHDKLDVEFDSGINLLLGENGKGKSSILEAIGYALFDSELRGGNQREA 60

Query: 65 TRIGSPSF--FSTFARVEGMEGLADISIK 91
           + G  S      F  ++G E +    I 
Sbjct: 61 IKYGKKSAKIEIEFTGIDGEEYIVTRKIP 89


>gi|255714078|ref|XP_002553321.1| KLTH0D14080p [Lachancea thermotolerans]
 gi|238934701|emb|CAR22883.1| KLTH0D14080p [Lachancea thermotolerans]
          Length = 1102

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK + +  F  +    L    +    VG+NG GK+ +L AI+     +     R +S  D
Sbjct: 69  IKRVQLRNFMCHEHFELELGPRLNFIVGNNGSGKSAVLTAITIGLGAKAADTNRGSSLKD 128

Query: 64  VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRC 102
           + R G  S         EG  G    +   E R +R+++ 
Sbjct: 129 LIREGCNSSKIVVVLNNEGFGGYEQGTYGTEIRIERTIKK 168


>gi|162456585|ref|YP_001618952.1| hypothetical protein sce8302 [Sorangium cellulosum 'So ce 56']
 gi|161167167|emb|CAN98472.1| hypothetical protein sce8302 [Sorangium cellulosum 'So ce 56']
          Length = 443

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 67/395 (16%), Positives = 131/395 (33%), Gaps = 61/395 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRAS--Y 61
           ++I  + +  FR +    L  + + T+ VG NG GKT +LE ++  L     F  AS   
Sbjct: 1   MRIDEIRLINFRAFERFALHLEPRLTVLVGRNGTGKTTVLEGLAVALGAWLSFFNASRDD 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVVIRVVDELNKH 119
             + +  +    +    V  M     + ++   ET         ++     R    + K 
Sbjct: 61  RPIPKSAARFVTTMHGGVPSMATCYPVRVEASGETPLGHVAWARELRGADSRTTTGVTKS 120

Query: 120 LRISWLVPSMDRIFSGLSMERRRF----LDRMVFAIDPRHRRRMIDF--ERLMRGRNRLL 173
            R                +E  RF    +D  +   +P     +  +   RL   +    
Sbjct: 121 GR-------------EGPLEATRFMPHGIDDAISGAEPIALPVLAYYGTGRLWHHKRDRN 167

Query: 174 TEGYFDSSWCSSIEAQMAELG-----VKINIARVE-MINALSSLIMEYVQKENFPHIKLS 227
            E     S      A +               R E  +  L+        +E  P  ++ 
Sbjct: 168 PERAGLKSRLQGYRAALEAASDQKGFEAWMAWREEDRVQRLAR-----AAEEGRPLTEVR 222

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAH 286
            +  L+G    +   L+                +RR     +  +L VD+ D  ++    
Sbjct: 223 -SPELEGVSAAACACLE---------------GARRIYYSANHQELRVDFVDGSSLPFGA 266

Query: 287 GSTGEQKVVLVGIFLA-HARLISNTTGFAP------ILLLDEISAHLDEDKRNALFRIVT 339
            S G++ ++ V   +A  A  ++ + G         ++L+DE+  HL    +  +   + 
Sbjct: 267 LSDGQRNLIAVAADIAWRATQLNPSFGAEAPARAAGVVLIDEVDLHLHPAWQWRVLDDLL 326

Query: 340 DI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
               G Q  +T     V  +    +  +   +HQA
Sbjct: 327 RAFPGLQFVVTTHSPQVMSAAPRGSVRLLDPDHQA 361


>gi|269795676|ref|YP_003315131.1| condensin subunit Smc [Sanguibacter keddieii DSM 10542]
 gi|269097861|gb|ACZ22297.1| condensin subunit Smc [Sanguibacter keddieii DSM 10542]
          Length = 1213

 Score = 73.0 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 26/211 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKTLTLRGFKSFASATTLNLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111
             DV   G+        A V      +D ++ +E  +                IN    R
Sbjct: 61  MEDVIFAGTSGRPPLGRAEVSLTIDNSDGALPIEYAEVTISRTLFRNGGSEYAINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDIQDLLSDSGLGREMHVIVGQGQLDAVLRATPEERRGFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           + +R  + +       +   + I  Q+  LG
Sbjct: 176 KALRKLDAMQGNLLRLTDLTAEIRRQLGPLG 206


>gi|255535243|ref|YP_003095614.1| hypothetical protein FIC_01102 [Flavobacteriaceae bacterium
           3519-10]
 gi|255341439|gb|ACU07552.1| hypothetical protein FIC_01102 [Flavobacteriaceae bacterium
           3519-10]
          Length = 550

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 65/378 (17%), Positives = 128/378 (33%), Gaps = 52/378 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK + I  FR+             IFVG N  GKTN  EA+ F   G   +     D+
Sbjct: 1   MKIKAIKIDNFRSIQQTEFTTTD-FNIFVGQNNCGKTNFFEAVEFFFNGIS-KSTKLEDL 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHLRI 122
            +    +       +    G  D   +++   +R+     ++   I       L    R 
Sbjct: 59  -KFKRETEREIIVEI-TFTGAIDGVAQMQNVANRTKIENALDGSDIVTFKRSSLLPTKRK 116

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            ++  +     +G       FL +  +    ++   +  + +                  
Sbjct: 117 MFINGTEVNPGTGFDAALNDFLPKFEYINTKQYYDSVAKYGK------------------ 158

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            + I   ++ +   I     +      +   E  + +N           +  +FD     
Sbjct: 159 TTPIGIMLSGVLTAILQENEQY-QQFQAKFRELFEDDN---------SEIKAEFDNVGNN 208

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI------VDYCDKAITIAHGSTGEQKVVL 296
           +K    K+  D  K+    +  +  P   DL+      VD   + +    G  G Q+ ++
Sbjct: 209 VKIHLEKQFPDCTKV----KFEVSAPVFDDLLKNFETTVDDGIETLAEEKG-DGMQRALM 263

Query: 297 VGIFLAHARLIS--NTTGFAPILLLDEISAHLDEDKRNAL---FRIVTDIGSQIFMTGTD 351
           + I  A+A         G + +  +DE   HL    +  L     I++    Q+F+  T 
Sbjct: 264 LAIIQAYADFRKANEDVGKSFLFFIDEAELHLHPTAQRNLKNVLHILSQTRDQVFI-NTH 322

Query: 352 KSVFDSLNETAK-FMRIS 368
            SVF + N T++   ++ 
Sbjct: 323 SSVFVADNYTSQTIFKVE 340


>gi|120403167|ref|YP_952996.1| chromosome segregation protein SMC [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955985|gb|ABM12990.1| condensin subunit Smc [Mycobacterium vanbaalenii PYR-1]
          Length = 1194

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 101/278 (36%), Gaps = 28/278 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASPTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTLTIDNSDNALPIEYSEVSITRRMFRDGAGEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLSEILESRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R  + +       +   + +  Q+  LG +  +AR      + + + +   +     
Sbjct: 176 KAVRKLDSMSANLARLTDLTTELRRQLKPLGRQAEMARRA--QTIQADLRDARLRLAADD 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +      F D    ++    + +   +  + R ++  +
Sbjct: 234 LVTRKAEFDDTNQAETTLRREHDELTERMEARTLELDA 271


>gi|126434521|ref|YP_001070212.1| condensin subunit Smc [Mycobacterium sp. JLS]
 gi|126234321|gb|ABN97721.1| condensin subunit Smc [Mycobacterium sp. JLS]
          Length = 1195

 Score = 73.0 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFAAPTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEHSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGGSEYEINGSHCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLSEILESRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KAVRKLDSMQANLARLTDLTTELRRQLKPLGRQAEMARRA 215


>gi|269127635|ref|YP_003301005.1| chromosome segregation protein SMC [Thermomonospora curvata DSM
           43183]
 gi|268312593|gb|ACY98967.1| chromosome segregation protein SMC [Thermomonospora curvata DSM
           43183]
          Length = 1218

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 99/275 (36%), Gaps = 29/275 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLRGFKSFASSTTLRFEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S            ++  +G   I    + +     RS +    IN    R
Sbjct: 61  MEDVIFAGTASRPPLGRAEVILTIDNSDGALPIDYSEVTISRLMFRSGQSEYAINGDPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +       RR  ++     +  R        E
Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGMVDTVLHAGPDGRRAVIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R    +           + +  ++  LG +  IAR   +  + + + +   +     
Sbjct: 176 KALRKLEAMQANLNRVQDLTAELRRRLKPLGRQAEIARKAAV--IQAELRDAKARLLADD 233

Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           +  L      +   + +    + E  + L   ++ 
Sbjct: 234 LVTLRTRLEREEADEAALQRRRAEVEQALAAAQQR 268


>gi|119962078|ref|YP_948190.1| chromosome segregation protein SMC [Arthrobacter aurescens TC1]
 gi|119948937|gb|ABM07848.1| chromosome segregation protein SMC [Arthrobacter aurescens TC1]
          Length = 1206

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 55/313 (17%), Positives = 109/313 (34%), Gaps = 33/313 (10%)

Query: 3   NRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRR 58
           + + +K L +  F+++AS     F+   T  VG NG GK+N+++A++++      +  R 
Sbjct: 13  SALHLKSLTVRGFKSFASATTFDFEPGVTAVVGPNGSGKSNVVDALAWVMGEQGAKTLRG 72

Query: 59  ASYADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVV 109
               DV   G+        A V      AD ++ +E  +    R L         IN   
Sbjct: 73  GKMEDVIFAGTSGRPPLGRAHVALTIDNADNALPIEYSEVTISRTLFRTGGSEYAINGAP 132

Query: 110 IRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
            R++D         L + + +      +DR+      +RR F++     +  R       
Sbjct: 133 CRLLDIQELLSDSGLGREMHVIVGQGQLDRVLHATPEDRRGFIEEAAGILKHR-----RR 187

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
            E+ +R    +           + I  Q+  LG +  IAR         +     +    
Sbjct: 188 KEKTVRKLEAMQANLARLGDLTAEIRRQLTPLGKQAEIARRAQTVQF-DVRDARARLLAD 246

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM------DSMSRRTLIGPHRSDLIV 275
             ++L+ T   D   + +    ++     L  GR+        +      +   R     
Sbjct: 247 ELVQLTTTLEKDVADEAALKERRQVVEAGLGSGRRRQAALEQQAAEATPRLNAARDHWYQ 306

Query: 276 DYCDKAITIAHGS 288
              ++    + GS
Sbjct: 307 LSANRERLRSLGS 319


>gi|111023487|ref|YP_706459.1| chromosome partition protein [Rhodococcus jostii RHA1]
 gi|110823017|gb|ABG98301.1| chromosome partition protein [Rhodococcus jostii RHA1]
          Length = 1201

 Score = 72.6 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIDYSEVSITRRMFRDGAGEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGRLAAILESRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KAVRKLDAMQANLARLNDLTAELRRQLKPLGRQAEVARRA 215


>gi|108798921|ref|YP_639118.1| condensin subunit Smc [Mycobacterium sp. MCS]
 gi|119868036|ref|YP_937988.1| condensin subunit Smc [Mycobacterium sp. KMS]
 gi|108769340|gb|ABG08062.1| condensin subunit Smc [Mycobacterium sp. MCS]
 gi|119694125|gb|ABL91198.1| condensin subunit Smc [Mycobacterium sp. KMS]
          Length = 1195

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFAAPTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEHSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGGSEYEINGSHCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLSEILESRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KAVRKLDSMQANLARLTDLTTELRRQLKPLGRQAEMARRA 215


>gi|88855274|ref|ZP_01129939.1| chromosome segregation protein [marine actinobacterium PHSC20C1]
 gi|88815802|gb|EAR25659.1| chromosome segregation protein [marine actinobacterium PHSC20C1]
          Length = 1191

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 103/290 (35%), Gaps = 29/290 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A      F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAQPTTFAFEQGVTCVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I    + +             IN    R
Sbjct: 61  MEDVIFAGTATKGPLGRAEVVLTIDNADGALPIEYSEVTISRTLFRNGGSEYAINGTQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D +      +RR F++     +  R        E
Sbjct: 121 LLDVQELLSDSGLGREMHVIVGQGQLDAVLHASPEDRRGFIEEAAGILKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIMEYVQKENFP 222
           + +R  + +       S     I  Q+  LG +  IA+    I ++       +  +   
Sbjct: 176 KTIRKLDAMQANLTRLSDLAGEIRRQLKPLGQQAEIAKEAASIASIVRDARARLLADEVV 235

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
            ++ S+  F   + ++    +     ++L   +  ++   +  +G    +
Sbjct: 236 GLRSSINDFSRSESERKTQRIV--LQEQLDQNKLREARLEQAQVGDDVDE 283


>gi|326693699|ref|ZP_08230704.1| chromosome partition protein [Leuconostoc argentinum KCTC 3773]
          Length = 1184

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 56/293 (19%), Positives = 105/293 (35%), Gaps = 34/293 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+K L IS F+++A    + F    T  VG NG GK+NI+EAI ++   +     R   
Sbjct: 1   MKLKSLEISGFKSFADKTVIEFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKDLRGTK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
            AD+   G+ +  +   A V       D  IK +  + R  R L        QIN V  R
Sbjct: 61  MADIIFGGTNTRPALNRAEVSMTFDNTDHYIKSDFSEIRITRKLYRSGESSYQINGVESR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    +RR  ++ +      ++++     +
Sbjct: 121 LRDIHELFMDTGLGRESFSIISQGRVESIFNAKPEDRRSIIEEVAAVY--QYKQNKQRAQ 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN-----IARVEMINALSSLIMEYVQK 218
           + ++     L                +AE   +        AR + ++ L   + +    
Sbjct: 179 KELQQTTDNLARVADIIHEIEGRIEPLAEQSAQATDYIAQKARFDTLDRLRLALTQQALV 238

Query: 219 ENFPHIKLSLT------GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
           E        LT             D     L ++   ++ + +  D++    L
Sbjct: 239 EQKAQATAELTRQDAQVNHTKTTVDALNQTLTQKRQARVNEQKTRDALQATIL 291


>gi|319441352|ref|ZP_07990508.1| chromosome segregation protein [Corynebacterium variabile DSM
           44702]
          Length = 1180

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 95/290 (32%), Gaps = 47/290 (16%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLKFEPGICGVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGAGERKALGRAEVTLTIDNSDGALPIDYSEVSVTRRMFRDGASEYEINGAKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      + +I      ERR +++     +  R        E
Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEERRAYIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELG-------------VKINIARV----EM 204
           +    R  +  +G  D        +  Q+  L                I   R+    + 
Sbjct: 176 KA--QRKLVSMQGNLDRLHDLTDELAKQLKPLARQAEAAQKAERVQATIRDNRLLLAADK 233

Query: 205 INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
           +  L+  + E   + +              ++       +EE    L D 
Sbjct: 234 VRRLTDQLTEADAELSVLTADTDAVRVDLEEYSGELAVTEEELRTALEDA 283


>gi|118472416|ref|YP_886763.1| chromosome segregation protein SMC [Mycobacterium smegmatis str.
           MC2 155]
 gi|118173703|gb|ABK74599.1| chromosome segregation protein SMC [Mycobacterium smegmatis str.
           MC2 155]
          Length = 1195

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASPTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTLTIDNSDNALPIEYSEVSITRRMFRDGAGEYEINGASCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLSEILESRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KAVRKLDSMAANLARLTDLTTELRRQLKPLGRQAEMARRA 215


>gi|297618563|ref|YP_003706668.1| SMC domain-containing protein [Methanococcus voltae A3]
 gi|297618623|ref|YP_003706728.1| SMC domain-containing protein [Methanococcus voltae A3]
 gi|297377540|gb|ADI35695.1| SMC domain protein [Methanococcus voltae A3]
 gi|297377600|gb|ADI35755.1| SMC domain protein [Methanococcus voltae A3]
          Length = 1113

 Score = 72.6 bits (177), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 92/244 (37%), Gaps = 28/244 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA- 59
           M   + +K L +  FR++ + ++ F    T  VG NG GK++I +AI++       R+  
Sbjct: 1   MGQNMILKTLELQNFRSHRNSKIEFKEGITTIVGKNGSGKSSIFQAINYALFAPSKRKEY 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-------- 111
             +++ +  + SF   F   E       I  +   +  +    L +ND ++         
Sbjct: 61  ELSNMIKNEADSFKIVF-TFEVRGKTYKIIRQRNRKSTKPENILLLNDTILADNNSMVNT 119

Query: 112 VVDELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMI 160
            V E+ +     +          +  + +    +R+  +D+++          R +  + 
Sbjct: 120 KVQEILEMDNNVFSNAIYIKQGDIINLINLPPKDRKDVIDKILGVEKYVKAHDRMKDVIT 179

Query: 161 DFERLMRGRNRLLTEGYFDSSWC--SSI-EAQMAELGVKINIARVEMINALSSLIMEYVQ 217
            ++     +  LL +   D +    S +   Q  E    ++  + + +  L +   E + 
Sbjct: 180 RYD----EKINLLNKNLVDETQINESILKNNQEIENYNNLSYEKSQNLKNLKNDEKEILN 235

Query: 218 KENF 221
           K N 
Sbjct: 236 KLNL 239



 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 15/115 (13%)

Query: 238  QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS-DLIVDYCDKAITIAHGSTGEQKVVL 296
            + +  L ++YA ++F     +   + + I      DLIVD     I +++ S GEQ  V 
Sbjct: 980  EMYIPLIQKYANEIFS----EFGMQYSHIQITSDCDLIVD----GIPVSNMSGGEQVAVA 1031

Query: 297  VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI---VTDIGSQIFMT 348
            + + L  A  I +       ++LDE +A+LDED+R  L  I   +  I   + +T
Sbjct: 1032 LALRLGIANAICDNM---ECIILDEPTAYLDEDRRRNLLTIFSSIKKINQIVIIT 1083


>gi|48477311|ref|YP_023017.1| chromosome segregation protein [Picrophilus torridus DSM 9790]
 gi|48429959|gb|AAT42824.1| DNA repair protein Rad50 [Picrophilus torridus DSM 9790]
          Length = 880

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 56/159 (35%), Gaps = 16/159 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA-SYAD 63
           + IK L +  F +Y    + F    TI  G NG GKT+I++AI F       R +    +
Sbjct: 1   MIIKSLKLKNFVSYDDAEIEFTPGITIITGKNGAGKTSIVDAIKFALFTET-RNSEKIEE 59

Query: 64  VTRIGSPSFFSTFARVEGME-GLADISIKLETRDDRSVRCLQIN-------DVVIRVVDE 115
           + + G  +         G +      S K      R     + N       D   + ++ 
Sbjct: 60  MVKKGKNNLSVMLEFYIGSDVYQVFRSYKFGKGSRRESYIKKNNEIIAEGFDQTTKAIEN 119

Query: 116 LNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMV 148
           +    +  +          MD + SG   +R+     ++
Sbjct: 120 ILGISKDVFKNSIFVGQGEMDSLISGTPKQRKEIFSEIL 158



 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           S GE+  + + + LA A            +++DE + +LDED+R  L  I+ 
Sbjct: 789 SGGEKTALSLALRLAVAEY---ALNNKSFIIMDEPTNYLDEDRRTNLKDIIQ 837


>gi|88601344|ref|YP_501522.1| chromosome segregation protein SMC [Methanospirillum hungatei JF-1]
 gi|88186806|gb|ABD39803.1| condensin subunit Smc [Methanospirillum hungatei JF-1]
          Length = 1146

 Score = 72.6 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 35/278 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + I  L I  F+++    ++ F    T+  G NG GK+NI+++I F   LS  R  R   
Sbjct: 1   MHITQLEIDNFKSFGRKTKIPFLPGFTVISGPNGSGKSNIIDSILFVLALSSSRHLRAEK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRV---VDEL 116
             D+  + +       A VE       +I  +++  ++     L +N    R    +D L
Sbjct: 61  LTDLINLNTD---RNTAEVEITFSDGTNIRRRIKRTENTYYNYLYLNGRSCRQGELLDFL 117

Query: 117 NKHLRI-----SWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERL---- 165
             H  +       +   ++RI      ERR+ +D    V   D +    + +  ++    
Sbjct: 118 AGHGIVPHGYNVVMQGDINRIIEMSDNERRKIIDEIAGVAEFDSKKDMALSELSQVRERM 177

Query: 166 ---------MRGRNRLLTEGYFDSSWCSSIEAQMAEL----GVKINIARVEMINALSSLI 212
                    +  R   L +    +     ++ ++  L          AR +  +AL   I
Sbjct: 178 TEESVHIEELSVRLAQLEKQKEQAVSYRKLQDELKYLTMCRSAARLSARKKDQDALLQSI 237

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       +S               + ++ A +
Sbjct: 238 AEEKSQVVQIEADISWKSHERDFIRDEIAEIDQKIAAR 275


>gi|289764767|ref|ZP_06524145.1| exonuclease SBCC [Fusobacterium sp. D11]
 gi|289716322|gb|EFD80334.1| exonuclease SBCC [Fusobacterium sp. D11]
          Length = 233

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 57/171 (33%), Gaps = 17/171 (9%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY-- 61
           ++ IK + +  +R+++++ + F     + +G NG GKT+ILEAIS +      R      
Sbjct: 2   KMIIKKVQLENYRSHSNITVEFTKGINLILGKNGRGKTSILEAISTVMFNTKDRSGKETG 61

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVIRVVDEL 116
               + G  S       +       ++  +      +          + +  +   ++EL
Sbjct: 62  KSYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDMTGSEYDGDIQEKLEEL 121

Query: 117 NKHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157
               +         +         IF     +R    +++    I      
Sbjct: 122 CGIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 172


>gi|329891031|ref|ZP_08269374.1| recF [Brevundimonas diminuta ATCC 11568]
 gi|328846332|gb|EGF95896.1| recF [Brevundimonas diminuta ATCC 11568]
          Length = 78

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           ++ + LA    +++     P+LLLDE  AHLDE +R ALF  +  +  Q FMTGT++ +F
Sbjct: 1   MLNLILAQVARLADQP-AQPVLLLDEAPAHLDEARRAALFDEIEALKLQAFMTGTERPLF 59

Query: 356 DSLNETAKFMRISNH 370
            +L   A+F+ +   
Sbjct: 60  AALEGRAQFVAVEGG 74


>gi|291007123|ref|ZP_06565096.1| chromosome segregation protein SMC [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 833

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 81/220 (36%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+L+A+ ++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLRFEPGITCVVGPNGSGKSNVLDALRWVMGEQGAKDLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTAGRAPLGRAEVTLTIDNSDGALPIEYTEVSITRRMFRDGASEYEINGNSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      E RR ++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGQLANILQAKPDEHRRLIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   S +  Q+  LG +  IAR  
Sbjct: 176 KALRKLDAMQANLTRLTDLTSELRRQLKPLGKQAEIARKA 215


>gi|118617609|ref|YP_905941.1| chromosome partition protein Smc [Mycobacterium ulcerans Agy99]
 gi|118569719|gb|ABL04470.1| chromosome partition protein Smc [Mycobacterium ulcerans Agy99]
          Length = 1200

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSLRAPLGRAEVTVTIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 215


>gi|306819257|ref|ZP_07452968.1| SMC structural maintenance of chromosomes partitioning protein
           [Mobiluncus mulieris ATCC 35239]
 gi|304648039|gb|EFM45353.1| SMC structural maintenance of chromosomes partitioning protein
           [Mobiluncus mulieris ATCC 35239]
          Length = 1199

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+ + +  +   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKNLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGQ 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111
            +DV   G+ +      A V+      D ++ +E  +                IN   +R
Sbjct: 61  MSDVIFAGTKTKAPLGRAEVQLTVDNTDGALPIEYSEVTISRTMFRSGGSEYAINGTPVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D + S    ERR F++     +  R        +
Sbjct: 121 LLDIQELLSDTGMGRQMHVIVGQGQLDTVLSASEAERRAFVEEAAGVLKHR-----QRKD 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           R +R    L           + +  ++  LG +   AR  
Sbjct: 176 RALRKLESLAVNLSRVQDLTNDVGKRLGPLGKQAEAARKA 215


>gi|227875976|ref|ZP_03994099.1| possible SMC structural maintenance of chromosomes partitioning
           protein [Mobiluncus mulieris ATCC 35243]
 gi|307700127|ref|ZP_07637173.1| chromosome segregation protein SMC [Mobiluncus mulieris FB024-16]
 gi|227843508|gb|EEJ53694.1| possible SMC structural maintenance of chromosomes partitioning
           protein [Mobiluncus mulieris ATCC 35243]
 gi|307614676|gb|EFN93899.1| chromosome segregation protein SMC [Mobiluncus mulieris FB024-16]
          Length = 1199

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+ + +  +   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKNLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGQ 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111
            +DV   G+ +      A V+      D ++ +E  +                IN   +R
Sbjct: 61  MSDVIFAGTKTKAPLGRAEVQLTVDNTDGALPIEYSEVTISRTMFRSGGSEYAINGTPVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D + S    ERR F++     +  R        +
Sbjct: 121 LLDIQELLSDTGMGRQMHVIVGQGQLDTVLSASEAERRAFVEEAAGVLKHR-----QRKD 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           R +R    L           + +  ++  LG +   AR  
Sbjct: 176 RALRKLESLAVNLSRVQDLTNDVGKRLGPLGKQAEAARKA 215


>gi|291460939|ref|ZP_06025996.2| exonuclease SBCC [Fusobacterium periodonticum ATCC 33693]
 gi|291379951|gb|EFE87469.1| exonuclease SBCC [Fusobacterium periodonticum ATCC 33693]
          Length = 923

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 60/182 (32%), Gaps = 23/182 (12%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY-- 61
           ++ IK + +  +R++++  + F     + +G NG GKT+ILEAIS +      R      
Sbjct: 2   KMIIKRVKLENYRSHSNTTVDFSKGVNLILGKNGKGKTSILEAISSVMFNTKDRSGKETG 61

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-----IRVVDEL 116
            +  + G  S                +  +      +      +N +         ++EL
Sbjct: 62  KNFIKFGEKSGKIEIEFTANDGRDYILKTEFFKTKPKRQTLKDLNGIDCEEDIQEKLEEL 121

Query: 117 NKHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFERLM 166
               +         +         IF     +R    +++    I          +++ +
Sbjct: 122 CGIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEM------YDKFL 175

Query: 167 RG 168
           + 
Sbjct: 176 KE 177


>gi|269977118|ref|ZP_06184092.1| chromosome segregation protein SMC [Mobiluncus mulieris 28-1]
 gi|269934949|gb|EEZ91509.1| chromosome segregation protein SMC [Mobiluncus mulieris 28-1]
          Length = 1199

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+ + +  +   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKNLTLKGFKSFANTVHMSLEPGVTCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGQ 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR 111
            +DV   G+ +      A V+      D ++ +E  +                IN   +R
Sbjct: 61  MSDVIFAGTKTKAPLGRAEVQLTVDNTDGALPIEYSEVTISRTMFRSGGSEYAINGTPVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D + S    ERR F++     +  R        +
Sbjct: 121 LLDIQELLSDTGMGRQMHVIVGQGQLDTVLSASEAERRAFVEEAAGVLKHR-----QRKD 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           R +R    L           + +  ++  LG +   AR  
Sbjct: 176 RALRKLESLAVNLSRVQDLTNDVGKRLGPLGKQAEAARKA 215


>gi|124003422|ref|ZP_01688271.1| ATP-binding protein [Microscilla marina ATCC 23134]
 gi|123990991|gb|EAY30443.1| ATP-binding protein [Microscilla marina ATCC 23134]
          Length = 449

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/399 (15%), Positives = 134/399 (33%), Gaps = 63/399 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +KIK L ++ FR +  L++ F D    +F+G NG GK+++L+A+   S     R A + +
Sbjct: 1   MKIKELELNNFRGFKHLKIQFPDNNLAVFIGTNGSGKSSVLDALGMASLWF-LRLAKWNE 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLAD----ISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             +     F      +   +   +    + +KL  +    +R  +  +  I +     K 
Sbjct: 60  SDQYFFDRFLLKGFNLINQDIRINSDEALQVKLTGQQANGIRISKFTNQEISIGSFNLKK 119

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             I         I                +  +  H  R  +       ++ +      D
Sbjct: 120 TSIVN-ANGSLPIV-------------AYYQTEKHHFLRRTN------QKHEIEEGEVND 159

Query: 180 SSWCSSIEAQMAEL----GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
           ++    I  Q+A        KI+ A             E+ ++     ++  +    D  
Sbjct: 160 NNPIKKILPQLATYQNAFSSKISHA---------EDFSEWFKQIEDEEVR-QIRNKSDFS 209

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD------------LIVDYCDKAIT 283
           +      +  +     F     D   + T +    +D            L ++   +   
Sbjct: 210 YRDFRLEVVRKALDVFFSALGSD---KYTNLSVKVNDSPVFEFKASDYSLAINKNGQDFD 266

Query: 284 IAHGSTGEQKVVLVGIFLA-----HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           I   S GE+ ++++   +A         + N      ++++DEI  HL    +  +   +
Sbjct: 267 INQLSDGEKTLIMLVCDIARRLTIANPALENKLEGEGVVMIDEIELHLHPAWQRNVLPAL 326

Query: 339 TDI--GSQIFMTGTDKSVFDSLNETAKF-MRISNHQALC 374
                  Q  +T     V ++++    F  R  N+Q  C
Sbjct: 327 QQTFPNIQFIVTTHSPHVLNNVDARNIFLFRNENNQITC 365


>gi|170289653|ref|YP_001736469.1| DNA repair ATPase SbcC [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173733|gb|ACB06786.1| ATPase involved in DNA repair, SbcC [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 902

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 20/162 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
           ++IK +++  F ++    + F       +G+NG GKT ILEAI++       R +   D 
Sbjct: 1   MRIKRISLENFGSHQKTDITFADGINAIIGNNGAGKTTILEAIAYALY---HRASRQQDE 57

Query: 64  VTRIGSPSF-FSTFARVEG------MEGLADISIKLETRD--DRSVRCLQINDVVIRVVD 114
           + RIG+P    +    V+G       E   D  +  E  +  +   + +Q +   +    
Sbjct: 58  LIRIGAPYMRVALEFEVDGRSYIVTRERGRDGGVSAELHEIIEGGKKLIQRDQSKVSSQI 117

Query: 115 E-LNKHLRISWL------VPSMDRIFSGLSMERRRFLDRMVF 149
           E +    R  +L         +  +      +R+  + R++ 
Sbjct: 118 EAILGFSRDVFLQGIYVRQGEIQELLESQPSKRKEIIARLLG 159


>gi|190574391|ref|YP_001972236.1| putative conjugative transposon DNA recombination protein
           [Stenotrophomonas maltophilia K279a]
 gi|190012313|emb|CAQ45939.1| putative conjugative transposon DNA recombination protein
           [Stenotrophomonas maltophilia K279a]
          Length = 526

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 116/386 (30%), Gaps = 58/386 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + I  F+++  L L  +A   + VGDN VGK+ +LEAI  +  G+   R    ++
Sbjct: 1   MPIERIVIDNFKSFRHLDLPLNAHMNLVVGDNEVGKSTLLEAIHAVVTGQLHGRNLAYEL 60

Query: 65  TR--IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           TR     P+       +      +   I +E                   +  L      
Sbjct: 61  TRYLFHQPTVQEYLGALATGTPASPPRISIEAYLGADA-----------ALASLRGTNNS 109

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRGRNRLLTEGY 177
             L  +  R+   L+ + R   +  +         P     +  +               
Sbjct: 110 LRLDTAGIRLLVELNDDYREEFNAYLQQHQGAVSLPVEYYTVRWYSFA--NNGVTARSIP 167

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KF 236
           FDS+   +        G+K        I  +    +   Q+ +   + LS          
Sbjct: 168 FDSTIIDT-------HGIKTLSGADRYIAGIIEQALTPAQRVS---LSLSFRRMRQSFSE 217

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHG 287
           +    A+     +   D                   T + P+  +L      K       
Sbjct: 218 EADVAAINAYLTEHTGDISHRALTVGVDTSPRSTWETSLSPYLDELPFTQAGK------- 270

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQI 345
             GEQ    V + LA      +  G A +LL++E   HL       L   +  +    Q+
Sbjct: 271 --GEQ--SAVKMKLA-----MHAAGAAHVLLIEEPENHLSYSSMTQLIDKIAALSTAQQV 321

Query: 346 FMTGTDKSVFDSLNETAKFMRISNHQ 371
            +      V + L      +  +  Q
Sbjct: 322 IIATHSSFVLNKLGVDNVILFSAQGQ 347


>gi|172040472|ref|YP_001800186.1| chromosome segregation protein [Corynebacterium urealyticum DSM
           7109]
 gi|171851776|emb|CAQ04752.1| chromosome segregation protein [Corynebacterium urealyticum DSM
           7109]
          Length = 1162

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/290 (16%), Positives = 95/290 (32%), Gaps = 47/290 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASSTTLKLEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I         R  R      +IN    R
Sbjct: 61  MEDVIFAGAGDRKPLGRAEVTLVIDNSDGKLPIEYSEVAVTRRMFRDGASEYEINGAKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      + +I      ERR F++     +  R        E
Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSQILESKPEERRAFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELG-------------VKINIARVEMINAL 208
           +    R  +  +   D        +  Q+  L                I   R  +    
Sbjct: 176 KA--QRKLVGMQANLDRLQDLTDELHRQLGPLARQADAAQRASTVQATIRDRRTVLAAHH 233

Query: 209 SSLIMEYVQKENFPHIKL-SLTGFLDGKFDQ---SFCALKEEYAKKLFDG 254
              + E + + N    +L     +L  + ++       ++EE    L D 
Sbjct: 234 VRTLSENLHEANAETERLIEEREYLTEQLEEHSGELAEVEEELRTALEDA 283


>gi|257076095|ref|ZP_05570456.1| chromosome segregation protein [Ferroplasma acidarmanus fer1]
          Length = 894

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 16/161 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + I  F ++ +  + F+    I  G NG GKT+IL+AI F             ++
Sbjct: 1   MIIESIKIINFLSHENTEITFEQGINIITGKNGAGKTSILDAIKFALFAESRNNEKNNEL 60

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVI------------ 110
            + G   F  +    V G          L+  ++   +  ++ N V++            
Sbjct: 61  IKKGKNYFEITLNFNVNGEHYEVYRHFGLKKAKNAERLASVKKNGVIVAETYEGVNVEIT 120

Query: 111 RVVDELNKHLRISWLVP--SMDRIFSGLSMERRRFLDRMVF 149
           ++++   +  + S  V    MD + SG   ER+     ++ 
Sbjct: 121 KILNVSREVFKNSVFVEQGQMDSLISGTPKERKTIFSDIIG 161



 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           D+ V       T+   S GE+  + + I L+    +        I+++DE +  LDED+R
Sbjct: 787 DIKVTQNSMEQTLESLSGGEKTALAIAIRLSVTEYVLEII---SIIIMDEPTNFLDEDRR 843

Query: 332 NALFRIV 338
           N L  I+
Sbjct: 844 NNLKDII 850


>gi|257464155|ref|ZP_05628536.1| exonuclease SBCC [Fusobacterium sp. D12]
 gi|317061671|ref|ZP_07926156.1| exonuclease sbcc [Fusobacterium sp. D12]
 gi|313687347|gb|EFS24182.1| exonuclease sbcc [Fusobacterium sp. D12]
          Length = 921

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 99/288 (34%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----------SPGR 54
           ++IK + +  +R+++ + + F     + +G NG GK++ILEAI             S G+
Sbjct: 1   MRIKKVQLKNYRSHSEIEVEFSRGINLILGRNGRGKSSILEAIGLALFHIKDRTGKSTGK 60

Query: 55  GFRRASYAD---VTRIGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
            F +    +   +    +        F   F +   +  L D+S +LE RD    +   +
Sbjct: 61  TFLKYGEKECSILVEFLANDGREYSIFHQYFEKKGKIMILKDLSTELEYRDGIEEKLEDL 120

Query: 106 NDVVIRVVDELNKHLRISWLV--PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
             +      E         +        IF      R +  ++ +F  +  +     + +
Sbjct: 121 CGIK----SEYRDVYENVIVAKQNEFINIFKETPENRAKIFNK-IFHTE-IYANLFSNLK 174

Query: 164 RLM----RGRNRLLTEGYFDSSWCSSIEAQMA-----ELGVKINIAR-VEMINALSSLIM 213
            L+    + +  L T     S+   + E + A     E    +   R  E +     L  
Sbjct: 175 GLLEQCQKEKEGLETSERVLSATLGNREERFAACREEEKAFTLWTKRKEEELQKKRKLTK 234

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           E    E        +   L  +  Q     K+E+ + L + ++     
Sbjct: 235 EVEDWEKIEKEYEVINSSLSLQKTQ-IEQNKKEFLQHLSEAKRAKKAR 281


>gi|120609373|ref|YP_969051.1| hypothetical protein Aave_0676 [Acidovorax citrulli AAC00-1]
 gi|120587837|gb|ABM31277.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
          Length = 712

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 76/408 (18%), Positives = 128/408 (31%), Gaps = 90/408 (22%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRG------ 55
           + I  L++  +RN+A+ +L+F       +G+NG GKTN+  AI  L   +  R       
Sbjct: 1   MHISKLSLVNYRNFANTKLLFQKGINTIIGENGSGKTNLFRAIRLLLDDNMIRSAYRLES 60

Query: 56  ---FRRASYADVTRIGSP------SFFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQ 104
               R      + R           F    A   V+ +       I  E     +   + 
Sbjct: 61  TDFHRG-----LGRWQGHWIIISLEFEEISADEAVQALFRHGTGGIDDEAIGKATYNLIF 115

Query: 105 INDVVIR----VVDE-----LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
                IR     +D+     L   L    L    + IF+G S     F D      +  +
Sbjct: 116 RPKKEIRLRLSQLDDGDHAGLAAILNPVTLD-DYETIFTGRSDA--DFND------EAFY 166

Query: 156 RRRMIDFERLMRGR-NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
           +  + DFE+    R N  +      +   S +         +I+      + AL  ++ E
Sbjct: 167 KEVVGDFEKA---RFNEEIEFPAIGAKIPSVLSV-----SKEIS---FTFVQALRDVVSE 215

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG----- 267
           +      P   LSL     G  D     L  +  K L D  +   D    R+ I      
Sbjct: 216 FHNNRTNPL--LSLLKGKSGDIDPVAFQLITDGVKALNDSIEALPDVQVVRSDISDTIKD 273

Query: 268 -----------------PHRSDLIVDYC---------DKAITIAHGSTGEQKVVLVGIFL 301
                            P  +D +                  I   S G   ++ + + L
Sbjct: 274 AAGEAYSPSSLSIKSDLPDEADKLFQSLKLFVGESGEGHEGPIHELSLGGANLIFLTLKL 333

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
              +        A  LL++E  AH+    +  LF  +    +QI  + 
Sbjct: 334 LEFKYQKAKQSIANFLLIEEPEAHIHTHIQKTLFDRLQYDDTQIIYST 381


>gi|22036085|dbj|BAC06579.1| hypothetical ATP-binding protein [Vibrio parahaemolyticus]
 gi|209364500|dbj|BAG74739.1| putative nucleotide-binding protein [Vibrio parahaemolyticus]
          Length = 560

 Score = 71.9 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 73/405 (18%), Positives = 138/405 (34%), Gaps = 74/405 (18%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSP--------- 52
           N++ +  L + +FR +  LR+ F+ + T+ +G+NG GKT +L +IS  LS          
Sbjct: 70  NKLNLVQLELFDFRKFKHLRISFEPKLTVIIGNNGQGKTALLNSISKTLSWLNANILKED 129

Query: 53  GRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           G+G R ++  D+ R     +   F       GL  I ++L      S       D  I+ 
Sbjct: 130 GQGQRLSATRDIRRNSEAPYTDVFTEFSFGSGLKRIPVRLSRAKLGSTSK---RDSEIKN 186

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL    R+     +   + +              +++D  +        R  +  N  
Sbjct: 187 IKELANIFRVV----NDQHLLNLPLC--------AFYSVDRSY-----QLPRSTKE-NAA 228

Query: 173 LTEGYFDSSWCSSIE-----AQMAELGVKINIARVE----MINALSSLIMEYVQKENFPH 223
           L E  FD ++  ++          E  + ++   V      I  L   + +         
Sbjct: 229 LREERFD-AYNFALTGSGKFEHFVEWFIALHKKSVNDKSTEIEELKQQVKDLESSVESGI 287

Query: 224 IKLS-LTGFLDGKFDQSFCALKEEYAKK-LFDGRKMDSMSRRTLIGP-----------HR 270
             L  +      + + +   LK    K  L D +  + +                     
Sbjct: 288 TSLKPILIQAQKQLNDALLTLKSANEKHVLTDAQTKEIVVNAICRVIPSISNIWVETDSG 347

Query: 271 SDLIVDYCDK-AITIAHGSTGE-----------QKVVLVGIFLAHARLISNTTGFAPILL 318
           SD++    D   ITI   S G+           +++V++   L       N      I+L
Sbjct: 348 SDIVFVTNDSIDITIEQLSDGQRTFLGLVADLVRRLVMLNPKL------ENPLNGQGIVL 401

Query: 319 LDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNET 361
           +DEI  HL    +  +   +       Q  +T     V  ++ + 
Sbjct: 402 IDEIELHLHPKWQQDVLLDLQHCFPNIQFIVTTHSPLVLSTVEKN 446


>gi|297571143|ref|YP_003696917.1| chromosome segregation protein SMC [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931490|gb|ADH92298.1| chromosome segregation protein SMC [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 1184

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 21/171 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R  +
Sbjct: 1   MHLKTLTLRGFKSFASQTTLHFEPGINCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGN 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
            ADV   G+ S  +   A V      +D  + ++  +    R L         IN    R
Sbjct: 61  MADVIFAGTASRQALGRAEVSLTIDNSDGQLPIDYSEVTITRTLFRAGGSEYAINGNTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
           ++D         + + + +      +D + +    ERR F++     +  R
Sbjct: 121 LLDIQELLSDTGMGRQMHVIIGQGRLDHVLTATPEERRTFIEEAAGVLKHR 171


>gi|213969459|ref|ZP_03397596.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|213925830|gb|EEB59388.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
          Length = 394

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/389 (13%), Positives = 118/389 (30%), Gaps = 71/389 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++  FR Y      F     + VG NG GKT++L  ++               +
Sbjct: 1   MRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGVAEC-------------L 47

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+        + + +    D+   ++  + RS    +                    
Sbjct: 48  IPYGN-----AMGQGQEILSKEDVRFVIDRHEGRSRFERK-----------------FPV 85

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR-------LLTEGY 177
            + +   IF   +    R L+     +DP     +     ++   N        +L    
Sbjct: 86  FIRADGDIFDLPNWRAVRLLEPWEGGVDPSSLSHLSA---VLARNNAGEQIDFPVLAFYR 142

Query: 178 FDSSWCSSIEAQMAELGVKINIAR-------VEMINALSSLIMEYVQKENFPHIKLSLTG 230
            +  W S+     AE   +   +R        + +  L      ++       ++  L  
Sbjct: 143 ANRRWSSA--RISAEFAAQQRTSRFDGYANWFDAVADLRD-FESWLIARTLERLQDRLDS 199

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
               + +     +       + D   +    R   +      L+      A+     S G
Sbjct: 200 TSTVEREDELEWVNRAIRLAIPDAHDLRYDLRLQSL------LVDMGEGNAVPFHELSDG 253

Query: 291 EQKVVLVGIFLAHAR-LISNTTGFAP------ILLLDEISAHLDEDKRNALFRIVTDI-- 341
           ++ ++ +   +A    +++   G         I+++DE+  HL    +  +   +     
Sbjct: 254 QRSLIALIADIARRMCVLNPHIGKDVLANTGGIVIIDELDIHLHPAWQRNIAPTLKKAFP 313

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNH 370
             Q   T     V  SL +  + + + N 
Sbjct: 314 KVQFIATSHSPQVIGSL-QPGEVILLKNG 341


>gi|119714067|ref|YP_919209.1| SMC domain-containing protein [Nocardioides sp. JS614]
 gi|119525976|gb|ABL79346.1| SMC domain protein [Nocardioides sp. JS614]
          Length = 533

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 113/375 (30%), Gaps = 51/375 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP----GRGFRRASYA 62
           +K + I  +R + S  L F     I VGDN  GK+ +LEAI         GR   ++  +
Sbjct: 2   LKKIAIRNYRTFKSFELEFAPDLNIVVGDNDAGKSTLLEAIGIALTLRLGGRSL-QSELS 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                   +     A +          I +E   D +     +         +       
Sbjct: 61  PFL-FNLETTEEYIAALTAGATPDPPEILIELFLDSASAPAILRGSNNLDGTDDPGVRVR 119

Query: 123 SWLVPSMD---RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL-----MRGRNRLLT 174
             L P        F     + R                  I F  +     +     +  
Sbjct: 120 IALNPDYHGEYTEFVKDPSQVRLVPTEYYNVQWLGFSGNAITFRSIPAVASLIDATTIRL 179

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
               D      I   + +        RVE+  A  SL  E+    +   I  SL G    
Sbjct: 180 ASGADYHLQGIINNHLTD------GERVELTRAYRSLREEFSSNPSIEAINKSLEGQPGD 233

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
             D++     +   +  ++            + PH  DL   +  K         GEQ  
Sbjct: 234 VSDRTLSLSIDVSQRSSWES----------NLVPHLDDLPFGFVGK---------GEQSS 274

Query: 295 V--LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD--IGSQIFMTGT 350
           +  L+ +        +     A I+L++E   HL     N L   +++     Q+F+T  
Sbjct: 275 LKVLLAL--------NRKVQDAHIVLVEEPENHLSFTNLNQLVAKISEKCKDKQVFITTH 326

Query: 351 DKSVFDSLNETAKFM 365
              V + L   + F+
Sbjct: 327 SSYVLNKLGLDSLFL 341


>gi|220912980|ref|YP_002488289.1| chromosome segregation protein SMC [Arthrobacter chlorophenolicus
           A6]
 gi|219859858|gb|ACL40200.1| chromosome segregation protein SMC [Arthrobacter chlorophenolicus
           A6]
          Length = 1195

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS     F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTVRGFKSFASATTFDFEPGVTAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+        A V       D ++ +E  +    R L         IN    R
Sbjct: 61  MEDVIFAGTSGRPPLGRAHVSLTIDNTDGALPIEYSEVTISRTLFRTGGSEYAINGAGCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +DR+      +RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGMGREMHVIVGQGQLDRVLHATPEDRRGFIEEAAGILKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           R +R    +       +     I  Q+  LG +  +AR  
Sbjct: 176 RTVRKLEAMQANLQRLTDLTGEIRRQLTPLGKQAEVARRA 215


>gi|294787079|ref|ZP_06752333.1| Smc [Parascardovia denticolens F0305]
 gi|315226731|ref|ZP_07868519.1| chromosome partitioning protein Smc [Parascardovia denticolens DSM
           10105]
 gi|294485912|gb|EFG33546.1| Smc [Parascardovia denticolens F0305]
 gi|315120863|gb|EFT83995.1| chromosome partitioning protein Smc [Parascardovia denticolens DSM
           10105]
          Length = 1225

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+NI++A++++      +  R  S
Sbjct: 1   MYVKELTLRGFKSFANATTLRFEPGITAVVGPNGSGKSNIVDALAWVMGEQGAKTLRGTS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+ S            ++  +   DI    + +             IN    R
Sbjct: 61  MEDVIFAGTSSRPPLGRAQVSLTIDNSDRTLDIDYSEVTISRTIYRNGGSEYAINGSPAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L  H+ +      +D I      + R F++     +  R        E
Sbjct: 121 LLDVQELLSDIGLGAHMHVVVGQGRLDSILRATPADNRAFIEEAAGILKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           R +R                + I+ Q+  L  +  ++R  
Sbjct: 176 RALRKLQSTQENVERLDDLLTEIKRQLGPLRRQARVSRKA 215


>gi|124004628|ref|ZP_01689472.1| ATPase [Microscilla marina ATCC 23134]
 gi|123989751|gb|EAY29280.1| ATPase [Microscilla marina ATCC 23134]
          Length = 412

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 19/128 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-------- 56
           ++I  + +  FR Y    + F     I +G NG GKT +LEA++  +    F        
Sbjct: 1   MRIDKIRLKNFRCYEETEIEFHPNFNIVIGINGTGKTAVLEALTVAA--GSFFLGIDYAE 58

Query: 57  -RRASYADV--------TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
            R     D+             P    T+  + G E      +         V+ L+I +
Sbjct: 59  NRHIRPEDIRVLSTEFDINEQFPVEVETWGVINGQEISWLRELTGPKNKTTYVKALKIKE 118

Query: 108 VVIRVVDE 115
           +   +   
Sbjct: 119 LAKEIQSR 126


>gi|188996887|ref|YP_001931138.1| SMC domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931954|gb|ACD66584.1| SMC domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 891

 Score = 71.5 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 111/282 (39%), Gaps = 44/282 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + +K + +  F  +   +L F     T  +G+NG GK++I+EAI F   G    + +  D
Sbjct: 1   MILKKIVLKNFLIHEDTQLEFSPNGITAIIGENGSGKSSIIEAIQFAFFGDS-DKGNLKD 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN----------------D 107
           + + G        A+VE      D   K+    +++ + +  N                 
Sbjct: 60  LIKWG-----RRQAKVELEFETKDGLYKVIKEINKTGKNVNTNSEIFIYENGRFRPYYQK 114

Query: 108 VVIRVVDELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMI 160
            V +++ ++ +  + ++          ++ I      ER++ ++ ++   +  + + +  
Sbjct: 115 EVNKILPKITRLTKKTFFTSVLIKQGEIEGILREKPSERKKIIEDLLNINLYRKIQEQFK 174

Query: 161 DFERLMRGRNRLLTEGYFDSS------WCSSIEAQMAELGVKINIARVEMINALSSLIME 214
           + ++ ++ R  +L E    +       +   +  Q+     +I +   E +N   + I +
Sbjct: 175 ENQKRVKTRLDILQEDILKTDKIQIQQYLEELNNQL-----EILLKNYEGLNQKLNNIKQ 229

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALK---EEYAKKLFD 253
            +++      + S      GK ++S   +K   E Y  +L +
Sbjct: 230 KLKEIEDQEKQASYLQSEIGKLEESIKNIKANIENYENQLKE 271



 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
             L V   +  ++    S G++  + + + LA ARL +  T     L+LDE + HLD+++
Sbjct: 787 DALEVGASNIEVSSEALSGGQRIALAIALRLAIARLFNEKTD---FLILDEPTIHLDQER 843

Query: 331 RNALFRIVTDIGS-----QIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           +  L  ++ D        Q+ +   D+ V D  +      +++  +   +
Sbjct: 844 KRELIDLLGDFKEKNFLKQLIVITHDEEVEDRAD---LIYKVNKGRVEVV 890


>gi|86159644|ref|YP_466429.1| ATP-dependent OLD family endonuclease [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776155|gb|ABC82992.1| ATP-dependent endonuclease of the OLD family-like protein
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 615

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 105/350 (30%), Gaps = 63/350 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L ++ FR++    + FD   T+  G+N  GKTN+LEA+  L+P       S   V
Sbjct: 1   MYLSSLQLTRFRSFRDGTVYFDETLTVLAGENNSGKTNVLEALRLLTP------PSDGRV 54

Query: 65  TRIGSP-------SFFSTFARVEGMEGLADISIKLETRDDRS------VRCLQINDVVIR 111
            R   P         FS       ++     S     R   S      ++  ++      
Sbjct: 55  VRWPEPRDITRGFESFSIRGTYSALDDRQRGSFLTCLRGPTSDSASLGLQYAEVPGKRRG 114

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
               +   L    + P    +   + +   R   R + +  P     ++        R  
Sbjct: 115 ERSRVVGPLDAPEIEPKARELVRHVHLPALRDASRELASSAPGRIEHLLRRTATDEQREA 174

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           L+ +         + +  +     ++     E + AL++ +  +     F          
Sbjct: 175 LVAKARQALELLKA-DPVIGAAEAQV----QEGVRALTAGVHPHEAHLGFA--------- 220

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
                D +   L              D   R  L G   +DL       A          
Sbjct: 221 -----DPTLTDL------------ARDLRLRLGLAGMPAADLYESGLGYAN--------- 254

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               ++ + L    L +       + L++E  AHL    +  +   + D 
Sbjct: 255 ----VLFLALVVVELANTADADLTLFLVEEPEAHLHPQLQAVMLEYLRDK 300


>gi|256026771|ref|ZP_05440605.1| exonuclease SBCC [Fusobacterium sp. D11]
          Length = 231

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 17/170 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62
           + IK + +  +R+++++ + F     + +G NG GKT+ILEAIS +      R       
Sbjct: 1   MIIKKVQLENYRSHSNITVEFTKGINLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVIRVVDELN 117
              + G  S       +       ++  +      +          + +  +   ++EL 
Sbjct: 61  SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDMTGSEYDGDIQEKLEELC 120

Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157
              +         +         IF     +R    +++    I      
Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 170


>gi|157737948|ref|YP_001490632.1| hypothetical protein Abu_1715 [Arcobacter butzleri RM4018]
 gi|157699802|gb|ABV67962.1| hypothetical protein Abu_1715 [Arcobacter butzleri RM4018]
          Length = 590

 Score = 71.1 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 62/384 (16%), Positives = 131/384 (34%), Gaps = 32/384 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFD--AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +K+K L ++ F+N     + F+     T+ +G+NG GK+NILEAIS +      ++    
Sbjct: 1   MKLKRLWVNGFKNLKDFEINFESNEGITLLIGNNGSGKSNILEAISAIFVSLIEKKKVDF 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           +        +      V+    +    I L+  +       +I+D+  +    L  +  +
Sbjct: 61  EY----EIEYILDVNEVDKNFYIELKIITLQNGNSEYTYSFKIDDLAKQKNQFLGNYNYL 116

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRNRLLTEGYFDSS 181
               PS   I +  S E  R  D         + ++ I   +R    +   + + ++  +
Sbjct: 117 ----PSH--IITSYSGEETRLWDLYYEKFYKDYIKKAITPTDRANHLKMIYVNKYHWKIA 170

Query: 182 --WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
               +  +         I              I ++    N     L L   L      +
Sbjct: 171 FLLLAVYDRGDNSFIKNILKIDSVESIGFKFNIAKFPSFRNQAGELLRLARSLTPNNLPN 230

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIG---PHRS--------DLIVDYCDKAITIAHGS 288
                 +  K +F     +      L+G   P R         D+     +  + +   S
Sbjct: 231 VNYTNLDDIKTIFQNFGHERDLFLLLVGAFLPARDTNKLILDIDIKFKKLNVLLDVNCLS 290

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            GE+K++LV + L +            ++LLDE  +H+    +     +V+   ++  + 
Sbjct: 291 EGEKKLILVKMILEYLSF------EKALVLLDEPDSHIHIQNKKVFKELVSSYENRFSIL 344

Query: 349 GTDKSVFDSLNETAKFMRISNHQA 372
            T         +      ++N + 
Sbjct: 345 TTHSPTLTHSFDDKHISMLNNGKI 368


>gi|307298907|ref|ZP_07578709.1| SMC domain protein [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915332|gb|EFN45717.1| SMC domain protein [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 945

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 103/279 (36%), Gaps = 29/279 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  +++  FR+++     F+    + +G NG GK++I+EAI     G G R     D 
Sbjct: 1   MRVTSIDLENFRSHSRYSETFEKGINLILGRNGSGKSSIIEAIGLALFGGGLRDKQ-EDA 59

Query: 65  TRIGS--PSFFSTFARVEGMEGLADI------SIKLETRDDRSVRCLQINDVVIRVVDEL 116
            +          TF   +G+E   +       S +L   D    R  +     IR++  L
Sbjct: 60  IKWNERRSRITVTFLADDGLEYRVEKVFGTGSSHELHQGDLLIARGKENVIEKIRIICGL 119

Query: 117 NKHLR------ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL----M 166
              +       I      +   F G    RR + +R VF +D  +R+   DF R     +
Sbjct: 120 QGDISKTFENVIVAFQNRIADQFLGSPAARRDYFNR-VFQVD-LYRKISTDFMRSYLTDL 177

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           R  N  +          + +E Q+          RV+ ++   S   E ++       K+
Sbjct: 178 RNENEAIERE------IAFMEQQLERKAE--VEERVKTLSGDLSRAKEELKSLEDALNKV 229

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
                   +  +   + + ++ +++   R   +  +  L
Sbjct: 230 KAERLRLEEIGRELSSKRAQFEQQMKSLRDEAASLKGNL 268


>gi|41409088|ref|NP_961924.1| hypothetical protein MAP2990c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41397447|gb|AAS05307.1| Smc [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1236

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 84/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 41  VYLKSLTLKGFKSFASPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 100

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 101 MEDVIFAGTSSRAPLGRAEVTVTIDNSDNALPIEYSEVSITRRMFRDGASEYEINGSSCR 160

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D I      +RR F++     +  R        E
Sbjct: 161 LMDVQELLSDSGIGREMHVIVGQGKLDEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 215

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  +AR  
Sbjct: 216 KALRKLDAMSANLARLTDLTTELRRQLKPLGRQAEVARRA 255


>gi|305681389|ref|ZP_07404196.1| chromosome segregation protein SMC [Corynebacterium matruchotii
           ATCC 14266]
 gi|305659594|gb|EFM49094.1| chromosome segregation protein SMC [Corynebacterium matruchotii
           ATCC 14266]
          Length = 1198

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 99/276 (35%), Gaps = 37/276 (13%)

Query: 2   TNRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFR 57
              + +K L +  F+++AS   L F+    + VG NG GK+N+++A++++      +  R
Sbjct: 19  VTEVYLKSLTLRGFKSFASATTLKFEPGICVVVGPNGSGKSNVVDALAWVMGEQGAKTLR 78

Query: 58  RASYADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDV 108
                DV   G+              ++  +G  DI     +   R  R      +IN  
Sbjct: 79  GGKMEDVIFAGAGGRKPLGRAEVTLTIDNSDGALDIDYTEVSVTRRMFRDGASEYEINGS 138

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             R++D         + + + +      + +I      ERR F++               
Sbjct: 139 KARLMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEERRAFIEEAAG----------- 187

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
               +++ R R         S  ++++  + +L  ++      +     +       + +
Sbjct: 188 ----VLKHRRRKEKAQRKLVSMQANLDR-LTDLTGELRRQLKPLARQAEAARRAATVQAD 242

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
               +L L G+   +  +   + +E+ A  L    +
Sbjct: 243 LREARLRLAGYELTQLQEKLGSAEEQTAMLLAQVEE 278


>gi|300741692|ref|ZP_07071713.1| Smc [Rothia dentocariosa M567]
 gi|300380877|gb|EFJ77439.1| Smc [Rothia dentocariosa M567]
          Length = 1205

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +  L +  F+++AS     F       VG NG GK+NI++A++++      +  R  S
Sbjct: 1   MHLTSLTLRGFKSFASSTTFEFAPGINAVVGPNGSGKSNIMDALAWVMGEQGAKTLRGGS 60

Query: 61  YADVTRIGSP------------SFFSTFARVEGMEGLADI---SIKLETRDDR-SVRCLQ 104
             DV   GS                    R++  +G   I   ++++     R      +
Sbjct: 61  MQDVIFAGSGTNGAENGGKSQLGRAQVVLRLDNTDGALSIPADTVEISRTMFRAGGSEYE 120

Query: 105 INDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
           IN    R+ D         + + + +      +D+I    + ERR  ++     +   +R
Sbjct: 121 INGSPARLADVHDILAEAGMGREMHVLIGQGQLDKILHASAAERREIMEEAAGILK--YR 178

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
           RR     R +   +  LT         + +  Q+  LG +           L + I E  
Sbjct: 179 RRQDKTARKLEAMSANLTRLN---DLAAELSNQLKPLGDQ--AESAATARELQARIRELH 233

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
                     +L   +  +  +       E+A +L + R+     R+T
Sbjct: 234 -GILIARETHALNAQVQEQTRRLSDT--SEHAHELDENREKIRTRRKT 278


>gi|256810611|ref|YP_003127980.1| SMC domain protein [Methanocaldococcus fervens AG86]
 gi|256793811|gb|ACV24480.1| SMC domain protein [Methanocaldococcus fervens AG86]
          Length = 1007

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 112/307 (36%), Gaps = 30/307 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRR--ASY 61
           + I  + I+ F+++ + ++ F+      +G+NG GK++I EA+ F   G    RR   +Y
Sbjct: 1   MIINSITINNFKSHVNTKITFNDGIIAIIGENGSGKSSIFEAMFFALFGADALRRMGLTY 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRVVD 114
            ++   G  +       ++         +  E     S +  + N+        V R + 
Sbjct: 61  DEIITKGKKA---MSVELDFEVNGNSYKVVREYDGRSSAKLYKNNELYAKTVNEVNRAIS 117

Query: 115 ELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           E+    +  +L         +  + +    +R+  + +++   D    +       ++  
Sbjct: 118 EILGVDKDMFLNSIYIKQGEIANLLNLPPADRKEVIGKLLGIDD--FEKCYQKMRDVINE 175

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
               L E   + S+    E  + E   ++     E +  + + I +   K  +   K   
Sbjct: 176 YRNQLKEVEVNLSYKEKFEKDLKEKENQLAEKEKE-LERIKANIDKI--KTEYETAK--- 229

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
             F++ K  +S   L E+   KL +  K   + +  L         V   ++ +    G 
Sbjct: 230 KNFVEWKEKKS---LYEKLINKLEEREKALELEKNKLKNLKYDLDEVLKANEILKSHKGE 286

Query: 289 TGEQKVV 295
            GE K +
Sbjct: 287 YGEYKSL 293



 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QI 345
            S GEQ  V + + LA A  +         ++LDE + +LDE++R  L  I   I S  Q+
Sbjct: 917  SGGEQIAVALSLRLAIANAL--IGNKVECIILDEPTVYLDENRRAKLAEIFRKINSVPQM 974

Query: 346  FMTGTDKSVFDSLNETAKFMRISNHQALC 374
             +  T     + + +T   + ++  + + 
Sbjct: 975  II-ITHHRELEEVADT--IVNVTKERGVS 1000


>gi|323359696|ref|YP_004226092.1| chromosome segregation ATPase [Microbacterium testaceum StLB037]
 gi|323276067|dbj|BAJ76212.1| chromosome segregation ATPase [Microbacterium testaceum StLB037]
          Length = 1173

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 112/312 (35%), Gaps = 53/312 (16%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++A S     +   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSVTLKGFKSFAQSTTFALEPGVTCIVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G S       A V+     +D ++ ++  +    R L         IN    R
Sbjct: 61  MEDVIFAGTSTRGPLGRAEVQLTIDNSDGALPIDYSEVTISRTLFRTGASEYAINGQTSR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D +    + +RR F++     +  R        E
Sbjct: 121 LLDVQELLSDSGLGREMHVIIGQGRLDTVLQATAEDRRGFIEEAAGILKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-----------------IN 206
           + +R    + T     S     +  Q+  LG +  IAR                    + 
Sbjct: 176 KTVRKLEAMETNLTRLSDLAGELRRQLKPLGKQAEIAREAATIAAVVRDAKARLFADELV 235

Query: 207 ALSSLIMEYVQKENFPH-IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK--------M 257
            L   + +  + EN  H  +L L    +G   +     +E+ ++ +   R+         
Sbjct: 236 RLRGQLADAARAENERHTERLVLQEQAEGLRHRVERLEEEQRSEAVDKARRVAFSLEQVQ 295

Query: 258 DSMSR-RTLIGP 268
           + +    TL G 
Sbjct: 296 ERLRGLYTLAGQ 307


>gi|257790558|ref|YP_003181164.1| SMC domain-containing protein [Eggerthella lenta DSM 2243]
 gi|257474455|gb|ACV54775.1| SMC domain protein [Eggerthella lenta DSM 2243]
          Length = 564

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 117/366 (31%), Gaps = 54/366 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L I  +R+   L L    +  +F+G N VGK+NIL A+ +L  G  +   +   +
Sbjct: 1   MKIDKLTIKNYRSVRDLELSLSPRINVFIGANNVGKSNILSAMEYL-LGPSY--PTANRL 57

Query: 65  TRI----GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            R     G        A                    R    L  N   I   DE+    
Sbjct: 58  ERWDFYQGDEELPLKIALDFDDGAHLSFDSTWHDGYGREKHGLNYNGSYIS--DEVRSRY 115

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
             + + P             RR LD            +     R+++  N  L+E    S
Sbjct: 116 ISASIGPD------------RRVLDNPAS-------SQWSLLGRMLKEFNERLSEETISS 156

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +   ++             A  + +  +   I+  +  ++  ++   L+  +  +     
Sbjct: 157 ADGHTVTK---------AEAFKQSMQEIRDQILFSITDQDGTNLMGELSRIMQQETANQL 207

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
                +    L +     ++ +   I     +  V      + +     G Q  + + I 
Sbjct: 208 NCSPNDLTVDL-NAYDPWNLYKTLQIFVTEQETGVQMRASDMGM-----GVQASLTIAIL 261

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FRIVTDIGSQIFMTG-----TDK 352
            A+++L          L +DE   +L    R         + D G+QIF+T       D 
Sbjct: 262 RAYSKL---KLKNQTPLFIDEPELYLHPQARRKFYRVIEELADSGTQIFLTTHSTEFIDL 318

Query: 353 SVFDSL 358
             FD +
Sbjct: 319 GNFDQI 324


>gi|150401140|ref|YP_001324906.1| SMC domain-containing protein [Methanococcus aeolicus Nankai-3]
 gi|150013843|gb|ABR56294.1| SMC domain protein [Methanococcus aeolicus Nankai-3]
          Length = 994

 Score = 71.1 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 71/178 (39%), Gaps = 22/178 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK +NI  FR++++  + F    T  +G+NG GK++I EA+++       RR   +D 
Sbjct: 1   MIIKNINIKNFRSHSNTDISFKQGITTIIGENGSGKSSIFEAMNYALFAP--RRIKLSDA 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIRVVDEL 116
            + G+  FFS     E       +   +  R  +++  L          ND V   + E+
Sbjct: 59  IKRGTD-FFSISFEFEINGKRYKV---IRGRGKKNINYLYENDKPYSENNDEVNNKIKEI 114

Query: 117 NKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
                  +          +  +      ER++ + +++     R+ +     +  ++ 
Sbjct: 115 LNMDDEVFSNAIYIKQGDISSLIQITPAERKKLIGKLLG--IERYEQVWDKLKTPLKN 170



 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           ++D  +   D  +    G  GEQ  V + I +  A+ + +       ++LDE +A LDE+
Sbjct: 891 KNDYDITVDDNPVKTLSG--GEQIAVALAIRIGIAKAVCSDLN---CIILDEPTAFLDEN 945

Query: 330 KRNALFRIVTDIG--SQIFM 347
           +R+ L R+  +I   SQIF+
Sbjct: 946 RRHNLLRVFRNIKSLSQIFV 965


>gi|229815432|ref|ZP_04445764.1| hypothetical protein COLINT_02480 [Collinsella intestinalis DSM
           13280]
 gi|229808965|gb|EEP44735.1| hypothetical protein COLINT_02480 [Collinsella intestinalis DSM
           13280]
          Length = 1178

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 124/366 (33%), Gaps = 45/366 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++A    + F+   T+ VG NG GK+N+ +AI   L     +  R  +
Sbjct: 1   MYLKSLTLKGFKSFADRAHMTFEPGLTVIVGPNGSGKSNVSDAILWVLGEQSAKQLRGQA 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS +            ++  + +  +    + +  R  RS      IN    R
Sbjct: 61  MEDVIFSGSSARKPVGVAEVTLVLDNSDHMLPVDFDEVAITRRMYRSGESEYLINSSPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L K          +D I      ERR  ++        +        E
Sbjct: 121 LMDIQDILHDSGLGKDTHSIISQGKLDAILQSRPEERRSLIEEAAGISKHK-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R    +             I  Q+  L  +++ AR      LS+   E  Q      
Sbjct: 176 RALRKIKSMDEHLTRARDINREISRQLKPLERQVDRARKY--KDLSARANELTQILAVDE 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
           ++     ++D +      A   E A+     ++ +              L V   +K + 
Sbjct: 234 LRQLQAQWVDLESASRESAAAFELARYRLSEKERELEK-----------LQVMLEEKGLF 282

Query: 284 IAHGSTGEQKVVL--VGIFLAHARLISNTTGFAPILLLDEISAHL--DEDKRNALFRIVT 339
           +     GEQ+  +  V   +     +    G   +  L E+   L   E +R      ++
Sbjct: 283 VGDL--GEQRRHMQDVVGRIGSDMRLLEEKGRNMVARLSEMRGTLSASEHQRKRTLEELS 340

Query: 340 DIGSQI 345
           DI  Q+
Sbjct: 341 DINRQL 346


>gi|148380046|ref|YP_001254587.1| hypothetical protein CBO2090 [Clostridium botulinum A str. ATCC
           3502]
 gi|153931048|ref|YP_001384342.1| hypothetical protein CLB_2027 [Clostridium botulinum A str. ATCC
           19397]
 gi|153937844|ref|YP_001387879.1| hypothetical protein CLC_2032 [Clostridium botulinum A str. Hall]
 gi|148289530|emb|CAL83630.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927092|gb|ABS32592.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           19397]
 gi|152933758|gb|ABS39257.1| conserved hypothetical protein [Clostridium botulinum A str. Hall]
          Length = 679

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 66/398 (16%), Positives = 138/398 (34%), Gaps = 69/398 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I+ FR Y  + + F+    I +G+N  GKT I+ A+ ++   R  R ++    
Sbjct: 1   MYISKLEINNFRCYEDVDIEFNEGLNIIIGENNCGKTTIMRALEYI-FNRS-RVSTP--- 55

Query: 65  TRIGSPSFFSTFAR--VEGMEGLADISIKLETRDDRSVR---CLQINDVVIRVVDELNKH 119
               +  F        +E  E   +I+I    +   S +      +   + ++       
Sbjct: 56  ---DTNDFNKELVNKALEIGEQPPEITIIATLKSSSSDKLEDKAVVASWLTKLETPWEAT 112

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR-RMIDFERLMR----------- 167
           L   + +P  D        E +  + + +      + + R   FE+ ++           
Sbjct: 113 LTYKFFLPESDI------KEYKEEI-KSIKKSQKNYIQKRWNIFEKYLKKYVSRIYGGNS 165

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKL 226
                +   Y +   C  ++A + ++  K+   +  ++  +     + +++ E+      
Sbjct: 166 ESKNKVESEYLNKFHCELLDA-LRDVESKMFTGKNALLKEVLGYFKDSHIEIEDGDEFSE 224

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKM--------DSMSRR--------TLIGPHR 270
                L  K  +      +EYA K+              D   +         TL G   
Sbjct: 225 EDKKKLIEKEKKDRKKEFDEYADKIVKNISKRVGNNDVLDFAEKTGASIGGIPTLGGNLE 284

Query: 271 SDLIVDYCDKAITIAHGST--------GEQKVVLVGIFLAHARLI-SNTTGFA----PIL 317
            + ++      I    G          G   ++ + + L+  ++I S+  G      PIL
Sbjct: 285 ENDVLSVLKLMIKNKTGIEVPIINNGMGYNNLIYISLLLSKFKMITSDEYGENAKVFPIL 344

Query: 318 LLDEISAHLDEDKRNALFRIVTD------IGSQIFMTG 349
           L++E  AHL    +    + + D      I  QIF+T 
Sbjct: 345 LVEEPEAHLHPALQYNFLKFLKDEVSNQKISRQIFITT 382


>gi|28872226|ref|NP_794845.1| hypothetical protein PSPTO_5113 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855480|gb|AAO58540.1| conserved protein of unknown function [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 422

 Score = 70.7 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/389 (13%), Positives = 117/389 (30%), Gaps = 71/389 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L +  FR Y      F     + VG NG GKT++L  ++               +
Sbjct: 1   MRLDHLRLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGVAEC-------------L 47

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+        + + +    D+   ++  + RS    +                    
Sbjct: 48  IPYGN-----AMGQGQEILSKEDVRFVIDRHEGRSRFERK-----------------FPV 85

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR-------LLTEGY 177
            + +   IF   +    R L+     +DP     +     ++   N        +L    
Sbjct: 86  FIRADGDIFDLPNWRAVRLLEPWEGGVDPSSLSHLSA---VLARNNAGEQIDFPVLAFYR 142

Query: 178 FDSSWCSSIEAQMAELGVKINIAR-------VEMINALSSLIMEYVQKENFPHIKLSLTG 230
            +  W S+     AE   +   +R        + +  L      ++       ++  L  
Sbjct: 143 ANRRWSSA--RISAEFAAQQRTSRFDGYANWFDAVADLRD-FESWLIARTLERLQDRLDS 199

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
               + +     +       + D   +    R   +      L+      A+     S G
Sbjct: 200 TPTVEREDELEWVNRAIRLAIPDAHDLRYDLRLQSL------LVDMGEGNAVPFHELSDG 253

Query: 291 EQKVVLVGIFLAHAR-LISNTTGFAP------ILLLDEISAHLDEDKRNALFRIVTDI-- 341
           ++ ++ +   +A    +++   G         I+++DE+  HL    +  +   +     
Sbjct: 254 QRSLIALIADIARRMCVLNPHIGKDVLANTGGIVIIDELDIHLHPAWQRNIAPTLKKAFP 313

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNH 370
             Q   T     V  SL +  + + + N 
Sbjct: 314 KVQFIATSHSPQVIGSL-QPGEVILLKNG 341


>gi|297204891|ref|ZP_06922288.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|297148792|gb|EDY55698.2| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 618

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 62/391 (15%), Positives = 122/391 (31%), Gaps = 56/391 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  L++S FR+   +  +   + TI  G N  GKT  L+AI+ L    G R    +D+
Sbjct: 1   MRLVELSVSNFRSLGHVESIPIHKQTILTGHNDCGKTATLDAIAVLL---GERSIIDSDI 57

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           +              +  E    ++++       +          +RV     +  R   
Sbjct: 58  SDFAEAEPVRAALPADQDEEQRTVTVEGRFALSAAEEKALDTGPFLRVRRRHVEGGRSCL 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                          R          I P     + D    +      L       +   
Sbjct: 118 ---EWLTEVPRNPALR---------DIAPLKAGELRDLASEL-----GLKLPEGKPNVKD 160

Query: 185 SIEAQMAELGV-------KINIARVEMINALSSLIMEYVQKENFPHIKLSL-------TG 230
           S    + E             +A   + +AL  L+         P   +           
Sbjct: 161 SWAELLKEHAAGTDDKVTDWVVAPEAVASALPQLLYFKGDAAESPEAVVRSILTAKLREY 220

Query: 231 FLDGKFDQSFCALKEEYAKKLFDG--RKMDSMSRRTLIGPHRSDLIVDY----------- 277
            L  +  +    L+EE+A  L D   R    +  R        D  V +           
Sbjct: 221 TLREETRKKITDLEEEFAALLKDDVIRLQKLVEERCAFDAFTVDPGVQFRPTVNSLSLTA 280

Query: 278 ---CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT--GFAPILLLDEISAHLDEDKRN 332
                +A+++    +G  + V + ++ A   L+S  +  G   I+  DE   HLD D + 
Sbjct: 281 AAPGQRAVSLTAAGSGRSRRVSLALWEASQELLSEDSDEGPGVIIAYDEPDTHLDYDHQR 340

Query: 333 ALFRIV----TDIGSQIFMTGTDKSVFDSLN 359
            + +I+    +   S + +     ++ D ++
Sbjct: 341 RIMQIIKVSASAAQSTVIVATHSLNLIDGVD 371


>gi|300933890|ref|ZP_07149146.1| chromosome segregation protein [Corynebacterium resistens DSM
           45100]
          Length = 1162

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 96/273 (35%), Gaps = 35/273 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASSTTLKLEPGICAVVGPNGSGKSNVVDALAWVMGEHSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGAGDRKPLGRAEVTLTIDNSDGALPIEYTEVSVTRRMFRDGASEYEINGAKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      + +I      ERR F++     +  R        E
Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEERRAFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           +    R  +  +   D        +  Q+  L  + + A+    + + + I E   +   
Sbjct: 176 KA--QRKLVSMQANLDRLHDLTDELHNQLGPLARQADAAQKA--STVQATIRETKVQLAA 231

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
             +K   T   D     S   +  E  ++L D 
Sbjct: 232 HQVK---TLSADLSDATSRAEMAAEQVEELQDA 261


>gi|295396040|ref|ZP_06806224.1| chromosome segregation protein Smc [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971128|gb|EFG47019.1| chromosome segregation protein Smc [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 1170

 Score = 70.7 bits (172), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 89/262 (33%), Gaps = 27/262 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A    L  +   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MFLKTLTMRGFKSFAHATTLELEPGITCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRS-VRCLQINDVVIR 111
             DV   G+              ++  +G   I    + +     RS      +N    R
Sbjct: 61  MDDVIFAGTAKKQGLGRAEVSLTIDNTDGAIPIDYTEVTISRTLFRSGGSEYSVNGAPAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L K + +      +D I       RR F++     +  R        +
Sbjct: 121 LLDIQELLNDSGLGKEMHVIVGQGRLDEILHADPETRRGFIEEAAGVLKHR-----RRKD 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-RVEMINALSSLIMEYVQKENFP 222
           + +R    L T           +  Q+  L  +   A R   + A        +  ++  
Sbjct: 176 KALRKLTGLQTNLDRVGDLRHELSKQLGPLARQAKAATRAATVQAQLRDATARLLADDIV 235

Query: 223 HIKLSLTGFLDGKFDQSFCALK 244
            ++  L      + +     L+
Sbjct: 236 RVQAKLEATHTTEDETIRQELE 257


>gi|294815357|ref|ZP_06774000.1| SMC_N multi-domain protein [Streptomyces clavuligerus ATCC 27064]
 gi|294327956|gb|EFG09599.1| SMC_N multi-domain protein [Streptomyces clavuligerus ATCC 27064]
          Length = 1371

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/311 (15%), Positives = 97/311 (31%), Gaps = 50/311 (16%)

Query: 11  NISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYADVTR 66
            +  F+++AS   L F+   T  VG NG GK+N+++A+S++      +  R     DV  
Sbjct: 2   TLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALSWVMGEQGAKSLRGGKMEDVIF 61

Query: 67  IGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIRVVDE-- 115
            G+              ++  +G   I                   QIN    R++D   
Sbjct: 62  AGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTITRIMFRNGGSEYQINGDTCRLLDIQE 121

Query: 116 ------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                 + + + +      +D +     M RR F++     +  R        E+ +R  
Sbjct: 122 LLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEAAGVLKHR-----KRKEKALRKL 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELG-------------VKINIARVEMIN----ALSSLI 212
             +             +  Q+  LG               +  AR+ ++      L   +
Sbjct: 177 ESMKANLARVQDLTDELRRQLKPLGRQAAVARRAAVIQADLRDARLRLLADDLVRLQRAL 236

Query: 213 MEYVQKE-------NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
              +  E            +L      + + +    AL     +      ++  ++ RT 
Sbjct: 237 RAEIADEAALKARKEAAEARLKAALAREAELEGEVRALVPRLQRAQQTWYELSQLAERTR 296

Query: 266 IGPHRSDLIVD 276
                ++  V 
Sbjct: 297 GTVSLAEARVK 307


>gi|319948357|ref|ZP_08022501.1| chromosome segregation protein SMC [Dietzia cinnamea P4]
 gi|319437988|gb|EFV92964.1| chromosome segregation protein SMC [Dietzia cinnamea P4]
          Length = 234

 Score = 70.3 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 82/222 (36%), Gaps = 30/222 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAAPTTLKFEPGICCVVGPNGSGKSNVVDALTWVMGEHSAKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDR-SVRCLQINDVVIR 111
             DV   G+              ++  +G   I    + L  R  R      +IN    R
Sbjct: 61  MQDVIFAGTAGKQPLGRAEVTLTLDNSDGALPIDYAEVSLTRRMFRDGAAEYEINGDRAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      ERR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLAEILESKPEERRAFIEEAAGILKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVE 203
           +    R     +G  D      + +  Q+  LG +  +AR  
Sbjct: 176 KA--QRKLAGMQGNLDRLTDLTTELRRQLKPLGRQAEVARRA 215


>gi|251791673|ref|YP_003006394.1| SMC domain-containing protein [Dickeya zeae Ech1591]
 gi|247540294|gb|ACT08915.1| SMC domain protein [Dickeya zeae Ech1591]
          Length = 482

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 125/409 (30%), Gaps = 45/409 (11%)

Query: 5   IKIKFLNISE---FRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           +KIK   +     F +  +L      + +  T+ VG+NG GKT+IL+A++        R 
Sbjct: 1   MKIKQFRLHHVGRFTSLDALIAPTADYPSNVTVLVGNNGAGKTSILQALATSLSWLVARV 60

Query: 59  ASYA--------DVTRIGSPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRCLQI 105
            S          D    G  S        +     G +     ++       +     Q+
Sbjct: 61  RSDKGSGSVISEDTITNGQTSAAIEVMVRDAPPPSGNDAEYHWTLAKARSGKKGQHASQL 120

Query: 106 NDVVIRVVDELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           N      V  L  H R +          + +   +ER   LD  +   +  H +++  ++
Sbjct: 121 N-----AVSALADHYRTALTQNEKSSLPLIAFYPVER-SVLDIPLKIRNKHHFQQIDGYD 174

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +           +              +   I     E +  +   I +   + N   
Sbjct: 175 NALNQGVDFRRFFEWFREREDIENENDETVLTNIFENSPEGVLKVLDDIEKADDRINKLA 234

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY------ 277
                    + K   +     ++   K  D +     S  T   P  S+L V        
Sbjct: 235 EYDFAGLSEEVKKLVNTMKFMQDIRDKAKDPQLNAVRSAITAFMPGFSNLRVRRKPRLHM 294

Query: 278 ----CDKAITIAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDE 328
                 +A  +   S GE+ ++ +       LA     + N      I+L+DE+  HL  
Sbjct: 295 SVDKNGEAFNVLQLSQGEKSLMALVGDIARRLAIMNPALDNPLHGQGIVLIDEVDMHLHP 354

Query: 329 DKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
             + ++   +T      Q  +T     V     +      + N +   +
Sbjct: 355 SWQRSIIERLTTTFPNCQFILTTHSPLVISDYKDVL-VYSLDNGELTVV 402


>gi|210622530|ref|ZP_03293223.1| hypothetical protein CLOHIR_01171 [Clostridium hiranonis DSM 13275]
 gi|210154165|gb|EEA85171.1| hypothetical protein CLOHIR_01171 [Clostridium hiranonis DSM 13275]
          Length = 1184

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 98/284 (34%), Gaps = 30/284 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++     +VF    T  VG NG GK+NI +A+   L     +  R   
Sbjct: 1   MYLKELELKGFKSFPEKTDIVFKNGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   GS      ++      ++  +G  DI     T   R+ R       +N    R
Sbjct: 61  LEDVIFAGSDKKKPMNYCEVSLTIDNSDGEIDIEFTELTIKRRAYRNGESQFFLNGKPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D I S     RR+  D         +R +  + E
Sbjct: 121 LKDIKELFLDTGIGKDSYSIIEQGKVDEILSNNPGVRRKVFDEACGIAK--YRYKKQEAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM-INALSSLIMEYV 216
           R ++  +  L                +      AE  ++I+    E+ +N+    I +  
Sbjct: 179 RNLKNTSENLERINDIYIEIEKQINPLKNQKEKAEKFLEISGRLKELEVNSFLREINKID 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           ++     + L  +       ++    L++EY     +   +D  
Sbjct: 239 KEAGEIKLALEESENKINTGEEKSKTLEKEYEDLKLESEVLDEE 282


>gi|325001482|ref|ZP_08122594.1| chromosome segregation protein SMC [Pseudonocardia sp. P1]
          Length = 440

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++AIS++      +  R   
Sbjct: 1   MHLKTLTMKGFKSFASATTLRLEPGITCVVGPNGSGKSNVVDAISWVLGEQGAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSGRSALGRAEVTLTIDNSDGALPIDYSEVSVTRRMFRDGAGEYEINGARAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +      +RR +++     +  R        E
Sbjct: 121 LLDVQELLSDSGIGREMHVIVGQGQLDGVLQSKPEDRRAYIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  LG +  IAR  
Sbjct: 176 KALRKLDAMQANLTRLTDLTAELRRQLKPLGRQAEIARKA 215


>gi|227504759|ref|ZP_03934808.1| chromosome segregation protein Smc [Corynebacterium striatum ATCC
           6940]
 gi|227198609|gb|EEI78657.1| chromosome segregation protein Smc [Corynebacterium striatum ATCC
           6940]
          Length = 1180

 Score = 70.3 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 93/287 (32%), Gaps = 33/287 (11%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATNLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MQDVIFAGAGDRKALGRAEVTLTIDNSDGALPIDYSEVSVTRRMFRDGASEYEINGSKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + I      +  I      +RR +++     +  R        E
Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLAEILESRPEDRRAYIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKEN 220
           +    R     +   D        +  Q+  L  +     R   + A        +  + 
Sbjct: 176 KA--QRKLTGMQANLDRLQDLTDELGKQLKPLARQAEAAKRAATVQADLRDARLRIAGDQ 233

Query: 221 FPHIKLSLTGFLDGK--FDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
              ++              +    + E+  +      ++++    T+
Sbjct: 234 VVQLRKKFADAKHQAAMLAEQVAEITEQLEEASGVQLEIEAELGETI 280


>gi|242398089|ref|YP_002993513.1| DNA double-strand break repair rad50 ATPase [Thermococcus sibiricus
           MM 739]
 gi|242264482|gb|ACS89164.1| DNA double-strand break repair rad50 ATPase [Thermococcus sibiricus
           MM 739]
          Length = 895

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 118/350 (33%), Gaps = 31/350 (8%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS---FLSPGRGFRRAS 60
           +++I+ L I  FR + +  + F+    + +G NG GK++ILEA+    +L  G  F R  
Sbjct: 8   KMRIRSLKIKNFRAHENSHVEFNDGINLIIGQNGSGKSSILEAVFASLYLGHG-SFPRGY 66

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
               TRIG  S F    + E      +I      R       L+ N  V+   D      
Sbjct: 67  KKVNTRIG-KSGFELVLKFEHNGKNYEI-----VRKSNGESYLKENGGVLHEKDSDIARW 120

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFA---IDPRHRRRMI--DFERLMRGRNRLLTE 175
              +L P    +F      R+  ++ ++      +   R+ +   DFE        +L E
Sbjct: 121 SERYLYP--LHVFRNALYIRQGEIENILVDEDVREKVLRKVLGIEDFENSANNAQEVLRE 178

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
                 +      ++ +    I     E    L  +I +  +              +  +
Sbjct: 179 LRKKREYL----EKLIQASGDIQNKIKEQEKRLGEVIHKINELRKKEIETAEKLSAVSKR 234

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           +++    +KE   +K  +   ++   ++       +   +   +K + +     G     
Sbjct: 235 YEE-LKEIKEILTQKEKEKLSVEGSMKKLEADIKNTRDRIAELEKELRVLRDKEG----- 288

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                L     +         L++        E +++ L   +  +  QI
Sbjct: 289 ----RLKEIEWVKKEYETLNALMVKRKELQEIELRKSRLEERIKVLQKQI 334



 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 108/303 (35%), Gaps = 19/303 (6%)

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE-LNKHL 120
           A+V        F +F  VE      +   K         + +QI +    +++  L    
Sbjct: 581 AEVLHEIEEKGFESFEDVEKRLKELEPLYKEYISLSNVPQEIQIREKRQELLETTLKDKE 640

Query: 121 RISWLVPSMDRIFSGL-SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG--RNRLLTEGY 177
           +   L  ++ ++ S      + RF       I   +         +++    N  L E  
Sbjct: 641 KDLNLTKNVFKMLSKEIEELKVRFTVEEFEKISKEYLSLSSLHAAVLKEIEGNENLKEEV 700

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
             +     ++ Q+    +K      E+I  + + +    +K      +    G  +   +
Sbjct: 701 ARN--LEDLKRQL--EAIKKAKEESELIEKMMADMKVLREKLLKLKAEAERRGLSEV--E 754

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    L  +  ++ + G K+    +    G  R  ++V Y  +   I   S GE+  + +
Sbjct: 755 RVASELFSDMTERKYQGIKIIREKK---FGRERIRIVVLYQGQEEEIDFLSGGERIALGL 811

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD---IGSQIFMTGTDKSV 354
              LA +           +L+LDE +  LDE++R  L  I+T       Q+ +   D+ +
Sbjct: 812 SFRLALSLY---KVKNMELLILDEPTPFLDEERRKKLVEIITQHLRKIPQVIIVSHDEEL 868

Query: 355 FDS 357
            D+
Sbjct: 869 KDA 871


>gi|15827858|ref|NP_302121.1| cell division protein [Mycobacterium leprae TN]
 gi|221230335|ref|YP_002503751.1| putative cell division protein [Mycobacterium leprae Br4923]
 gi|18202761|sp|Q9CBT5|SMC_MYCLE RecName: Full=Chromosome partition protein smc
 gi|13093410|emb|CAC30580.1| possible cell division protein [Mycobacterium leprae]
 gi|219933442|emb|CAR71724.1| possible cell division protein [Mycobacterium leprae Br4923]
          Length = 1203

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R + 
Sbjct: 1   MYLKSLTLKGFKSFASPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  + +  I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTLSRAPLGRAEVTLIIDNSDNVLPIEYSEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D+I      +RR F++           +     E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLDQILQSRPEDRRTFIEEAAGI-----LKYRRRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           + +R  + +       +   + +  Q+  L  +  +AR  
Sbjct: 176 KALRKLDAMSANLARLTDLTTELRRQLKPLSRQAEVARRA 215


>gi|325918051|ref|ZP_08180212.1| RecF/RecN/SMC N-terminal domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325535748|gb|EGD07583.1| RecF/RecN/SMC N-terminal domain-containing protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 526

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 116/386 (30%), Gaps = 58/386 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + I  F+++  L L  +A   + VGDN VGK+ +LEAI  +  G+   R    ++
Sbjct: 1   MPIERIVIDNFKSFRHLDLPLNAHMNLVVGDNEVGKSTLLEAIHAVVTGQLHGRNLAYEL 60

Query: 65  T--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           T      P+     A +      +   I +E                   +  L      
Sbjct: 61  TPYLFHQPTVQEYLATLAAGTPASPPRISVEAYLGGDA-----------ALASLRGTNNS 109

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRGRNRLLTEGY 177
             L  +  R+   L+ + R   +  +         P     +  +               
Sbjct: 110 LRLDTAGIRLLVELNDDYREEFNAYLQQHQGAVSLPVEYYTVRWYSFA--NNGVTARSIP 167

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-KF 236
           FDS+   +        G+K        I  +    +   Q+ +   + LS          
Sbjct: 168 FDSTIIDT-------HGIKTLSGADRYIAGIIEQALTPAQRVS---LSLSFRRMRRSFSE 217

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRR---------TLIGPHRSDLIVDYCDKAITIAHG 287
           +    A+     +   D                   T + P+  +L      K       
Sbjct: 218 EADVAAINAYLTEHTGDISHRALTVGVDTSPRSTWETSLSPYLDELPFTQAGK------- 270

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQI 345
             GEQ    V + LA      +  G A +LL++E   HL       L   +  +    Q+
Sbjct: 271 --GEQ--SAVKMKLA-----MHAAGAAHVLLIEEPENHLSFSSMTQLIDKIAALSTAQQV 321

Query: 346 FMTGTDKSVFDSLNETAKFMRISNHQ 371
            +      V + L      +  +  Q
Sbjct: 322 IIATHSSFVLNKLGVDNVILFSAQGQ 347


>gi|269219660|ref|ZP_06163514.1| Smc protein [Actinomyces sp. oral taxon 848 str. F0332]
 gi|269210902|gb|EEZ77242.1| Smc protein [Actinomyces sp. oral taxon 848 str. F0332]
          Length = 1185

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 99/274 (36%), Gaps = 34/274 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+      VG NG GK+N+++A++++      +  R  +
Sbjct: 3   VHLKSLTLRGFKSFATATTLRFEPGINCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGN 62

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRS-VRCLQINDVVIR 111
            ADV   G+              ++  +G+  I    + +     RS      IN    R
Sbjct: 63  MADVIFAGTSKRPALGRAEVSLTIDNSDGVLPIDYTEVTISRTLFRSGGSEYAINGTSCR 122

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +    + +RR F++     +  R        E
Sbjct: 123 LLDIQELLSDTGMGREMHVIIGQGKLDEVLKAGAEDRRGFIEEAAGVLKHR-----RRKE 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +R    +           + +  Q+  L  +   AR   +  + +   +   +     
Sbjct: 178 KALRKLESMSGSLARIEDLSAELRRQLGPLARQAEAARKAQV--MQAEARDARARLLADD 235

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           +          + D+S      + +++   GR  
Sbjct: 236 LAQQQARVESHEVDES------KLSERRAAGRAR 263


>gi|11499153|ref|NP_070387.1| chromosome segregation protein (smc1) [Archaeoglobus fulgidus DSM
           4304]
 gi|2649004|gb|AAB89690.1| chromosome segregation protein (smc1) [Archaeoglobus fulgidus DSM
           4304]
          Length = 1156

 Score = 69.9 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 97/274 (35%), Gaps = 41/274 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRA 59
           + I+ + +  F+++     + F    T+  G NG GK+NI+++I F     +  +  R  
Sbjct: 1   MHIEKIRLKNFKSFGKKAEIPFFKGFTVITGPNGSGKSNIIDSILFCLGLSTSTKQLRAE 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
              D+   G           E      +I+ K++  +        +N   +  + E++  
Sbjct: 61  RLTDLVHNGRSEAEVAILFSENG-KKYEIARKVKITEKGYYSYYYLNGKSV-SLSEIHSF 118

Query: 120 LRI---------SWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRG 168
           L             +   + RI      +RR+ +D    +   D +  + + + ER+   
Sbjct: 119 LSQFGIYSDAYNVVMQGDVTRIIEMSPFQRRKIIDDVAGISEFDEKKEKALEELERV--- 175

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
                            +EA +AE+  +        +  L     E ++ +     K   
Sbjct: 176 -----------RESIEKLEAVIAEVNDR--------LQTLERDRNEAIRYKEILSKKEEY 216

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMS 261
            G+L      +    KE+  ++L    R+ D ++
Sbjct: 217 EGYLRAHNYLTAVKSKEKVERELERLERQKDELT 250


>gi|284161167|ref|YP_003399790.1| chromosome segregation protein SMC [Archaeoglobus profundus DSM
           5631]
 gi|284011164|gb|ADB57117.1| chromosome segregation protein SMC [Archaeoglobus profundus DSM
           5631]
          Length = 1135

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 17/154 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           + I+ + +  F+++    + F    T+  G NG GK+NI+++I F    S  +  R    
Sbjct: 1   MFIRKIKLRNFKSFKKAEIEFRDNFTVITGPNGSGKSNIIDSILFCFGISSSKTLRADKL 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            D+ + G      T   ++G      +    +  D        IN   +    ++ + + 
Sbjct: 61  TDLIKHGQKEAEVTI-ELDGYIVRRRV----KKTDKGYYSYYYINGKSV-SYSDIERLIE 114

Query: 122 ISWLVPSMDRIFSGL--------SMERRRFLDRM 147
              L    + +  G          ++RR+ ++ +
Sbjct: 115 KLGLNTEYNIVMQGDVTRVAEMTPIQRRKIIEDI 148


>gi|13541058|ref|NP_110746.1| chromosome segregation protein [Thermoplasma volcanium GSS1]
 gi|18202324|sp|P58302|RAD50_THEVO RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|14324442|dbj|BAB59370.1| purine NTPase [Thermoplasma volcanium GSS1]
          Length = 895

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 102/275 (37%), Gaps = 33/275 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  F +++   + FD    + +G NG GK++I++AI F       R     D+
Sbjct: 1   MIIERIRLRNFLSHSDSDIYFDTGINMIIGQNGAGKSSIVDAIRFALFSDK-RTRRTEDM 59

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-RVVDELNKHLRI 122
            + G        + R EG       +I+   +   +   ++ +  +I R   +++ ++  
Sbjct: 60  IKKGERYMEVELYFRSEGHSYRIRRTIERRGKSISTDAEIERDGSIITRGASDVSNYVEK 119

Query: 123 --------SWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
                    +L         MD + S    ER++ LD  +  ID      +     L++ 
Sbjct: 120 NVLNINKDVFLTSIFVRQGEMDALVSKDPAERKKILD-EILNIDRLEAGYL-----LLKE 173

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
              ++ +   + S    ++ ++     +I+    + I  L S +     +      ++++
Sbjct: 174 ---VIDDLTANVSDYDYLKNELQSKINEIDNN-NKQIEELESKLRLIEPEIKALEEEINI 229

Query: 229 TGFLDGKFDQSFCALKEE------YAKKLFDGRKM 257
                   ++    L  +      Y  +L + +  
Sbjct: 230 KENKKDHLNEELHRLNAQLETIKKYEMELAESQSR 264



 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 66/174 (37%), Gaps = 5/174 (2%)

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           ++  +  L +   D     S+   + +   K+NIA  ++   L     E + K      +
Sbjct: 683 LKQLSSRLDKINVDQYEWKSLHKVLLQDNEKLNIAVADIRKRLEK--KETIIKAIADLKR 740

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           +      DG       +  E    +     +   +    +      ++ V     A  I 
Sbjct: 741 VREAFSKDGVPAIIRKSASEFITNQTRQYIQRFELDIDDVDVDQDFNITVFRGGIAEGID 800

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
             S GE+  V   + +A A+ ++       +L++DE +A LDED+R+ L  I+ 
Sbjct: 801 SLSGGERMAVAFALRVAIAQFLNK---DVSLLVMDEPTAFLDEDRRSDLANIIE 851


>gi|227503346|ref|ZP_03933395.1| chromosome segregation protein Smc [Corynebacterium accolens ATCC
           49725]
 gi|227075849|gb|EEI13812.1| chromosome segregation protein Smc [Corynebacterium accolens ATCC
           49725]
          Length = 1176

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 107/328 (32%), Gaps = 59/328 (17%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++   +  +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATSLKFEPGICAVVGPNGSGKSNVVDALAWVMGEASAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MQDVIFAGAGDRKQLGRAEVTLTIDNADGALPIEYSEVSVTRRMFRDGASEYEINGAKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + I      +  I      +RR +++     +  R R+     +
Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLSEILESRPEDRRSYIEEAAGVLKHRRRKEKAQRK 180

Query: 164 RLMRGRNRLLTEGYFDS--------------------SWCSSIEAQMAELGVKINIARVE 203
                 N    +   D                           +A++   G +I   R +
Sbjct: 181 LTGMQANLDRLQDLTDELGKQLKPLARQAEAAQRAATVQADVRDARLRLAGDRIVGLRQK 240

Query: 204 MIN------ALSSLIMEYVQKEN------------FPHIKLSLTGFLDGKFDQSFCALKE 245
           +        ALS+ + E   +                 +           FD S  + + 
Sbjct: 241 LSAAEQTATALSTQVEETTAQLEEATEHQMELETQLEEVNPQAESAQKLWFDLSTLSERI 300

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
              +++ + R  ++ S+    G    DL
Sbjct: 301 AATQRIAEERADNAGSQVAYAGQDPDDL 328


>gi|283457879|ref|YP_003362479.1| chromosome segregation ATPase [Rothia mucilaginosa DY-18]
 gi|283133894|dbj|BAI64659.1| chromosome segregation ATPase [Rothia mucilaginosa DY-18]
          Length = 1120

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 94/288 (32%), Gaps = 33/288 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +  L +  F+++AS     F       VG NG GK+N+L+A++++      +  R  S
Sbjct: 19  VHLMSLTLRGFKSFASATTFEFTPGINAVVGPNGSGKSNVLDALAWVMGEQGAKSLRGGS 78

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-----------------SVRCL 103
             DV   GS    S         G A +++  +  D                        
Sbjct: 79  MKDVIFAGSGEAGSGDGAQRAPLGRAKVTLTFDNSDGTLSIPADRVQISRTMFRSGGSEY 138

Query: 104 QINDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           +IN    R+ D         L + + +      +D +    + +RR  +++    +   +
Sbjct: 139 EINGSPARLADIQDLLSEAGLGQQMHVLVGQGQLDAVLHATAQQRRDMIEQAAGVVK--Y 196

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--VEMINALSSLIM 213
           RRR     R +      +T      +   S    ++E       AR     I  L ++++
Sbjct: 197 RRRQEKTSRKLESVASNVTRLSDLVAELDSQLQPLSEQAESAATARQLQARIRQLEAVLL 256

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                        +L    +G         + E A+      + +   
Sbjct: 257 ARQLGVLQAEQAQALASEAEGTRRAETLKEQLEAARAASAKHQQEQNR 304


>gi|311113795|ref|YP_003985017.1| chromosome partition protein SMC [Rothia dentocariosa ATCC 17931]
 gi|310945289|gb|ADP41583.1| chromosome partition protein SMC [Rothia dentocariosa ATCC 17931]
          Length = 1205

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 103/289 (35%), Gaps = 38/289 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +  L +  F+++AS     F       VG NG GK+NI++A++++      +  R  S
Sbjct: 1   MHLTSLTLRGFKSFASSTTFEFAPGINAVVGPNGSGKSNIMDALAWVMGEQGAKTLRGGS 60

Query: 61  YADVTRIGSP------------SFFSTFARVEGMEGLADI---SIKLETRDDR-SVRCLQ 104
             DV   GS                    R++  +G   I   ++++     R      +
Sbjct: 61  MQDVIFAGSGTSGAENGGKSQLGRAQVVLRLDNTDGALSIPADTVEISRTMFRAGGSEYE 120

Query: 105 INDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
           IN    R+ D         + + + +      +D+I    + ERR  ++     +   +R
Sbjct: 121 INGSPARLSDVHDILAEAGMGREMHVLIGQGQLDKILHASAAERREIMEEAAGILK--YR 178

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
           RR     R +   +  LT         + +  Q+  LG +           L + I E  
Sbjct: 179 RRQDKTARKLEAMSANLTRLN---DLAAELSNQLEPLGDQ--AESAATARELQARIRELH 233

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
                     +L   +  +  +     ++  A +L + R+     R+TL
Sbjct: 234 -GILITRETHALNAQVQEQTRRLSDTSEQ--AHELDESREKIRTRRKTL 279


>gi|306836413|ref|ZP_07469390.1| chromosome segregation protein Smc [Corynebacterium accolens ATCC
           49726]
 gi|304567694|gb|EFM43282.1| chromosome segregation protein Smc [Corynebacterium accolens ATCC
           49726]
          Length = 1176

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 21/171 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++   +  +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATSLKFEPGICAVVGPNGSGKSNVVDALAWVMGEASAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MQDVIFAGAGDRKQLGRAEVTLTIDNADGALPIEYSEVSVTRRMFRDGASEYEINGAKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
           ++D         + + + I      +  I      +RR +++     +  R
Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLSEILESRPEDRRSYIEEAAGVLKHR 171


>gi|227497499|ref|ZP_03927728.1| SMC structural maintenance of chromosomes partitioning protein
           [Actinomyces urogenitalis DSM 15434]
 gi|226833073|gb|EEH65456.1| SMC structural maintenance of chromosomes partitioning protein
           [Actinomyces urogenitalis DSM 15434]
          Length = 431

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 81/210 (38%), Gaps = 26/210 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L I  F+++AS   L  +   T  VG NG GK+N+++A++++      +  R  S
Sbjct: 1   MHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGVKNLRGGS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIK----LETRDDRSVRCLQINDVVIR 111
            ADV   G+ S            ++  +G+  I         T         QIN    R
Sbjct: 61  MADVIFAGAGSRPALGRAEVSLTIDNSDGVLPIDYTEVTVTRTLFRGGGSEYQINGTPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D +      ERR F++     +  R        E
Sbjct: 121 LLDVQELLSDTGLGRQMHVIVGQGRLDAVLQATPEERRGFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           R +R  + +  +    +   + +  Q+  L
Sbjct: 176 RALRKLDSMAADLARLTDLTAELRRQLGPL 205


>gi|172039130|ref|YP_001805631.1| hypothetical protein cce_4217 [Cyanothece sp. ATCC 51142]
 gi|171700584|gb|ACB53565.1| unknown [Cyanothece sp. ATCC 51142]
          Length = 379

 Score = 69.9 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 59/383 (15%), Positives = 127/383 (33%), Gaps = 51/383 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RRAS 60
           I+ L+I  +R +    +   AQ  + VGDN  GKT++LEAI  L   + +      +  +
Sbjct: 2   IRNLSIKNYRCFEDFYVDSLAQVNLIVGDNNSGKTSLLEAIYLL-LDKSYYYKFHNKTTT 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD-ELNKH 119
             ++ ++    F S     E    +  + +             +IN  +    D +    
Sbjct: 61  LINLLKL-RKEFLSLILEDEKKSNIIKVYLIPHL-----FYQYKINKTIEIFCDNDFFSK 114

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           + I+ L P            + +F +  +   D    +   +F +       +  + +++
Sbjct: 115 VEITNLKPE-----------KSKFKNTHLLITDDECFKVNYEFRKSNTENKNIRGQAFYE 163

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +   +   +  E   +    R+  I  L      Y     F  +       ++  +D  
Sbjct: 164 INQQGTYIQETPENANQ---TRLNGIERLI----MYTPDSIFMPLNYDYLDDVEKNWDLI 216

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
               KE+   +       D       +  +   + +    +   I   S G+    ++G+
Sbjct: 217 QLTPKEDKVIEALQIINPDIERIGFTVSQYTKQIRLKIRGEDQPIPLSSMGQGMNRILGL 276

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKR----NALFRIVTDIGSQIFMTG------ 349
                 L         +LL+DEI   L  + +      L +   ++  QIF T       
Sbjct: 277 ITTAVIL------ENGVLLIDEIETGLHYESQTDMWRLLIKTAQELNVQIFATTHSWDCI 330

Query: 350 -TDKSVFDSLNET--AKFMRISN 369
              +   + + +    K  R+ N
Sbjct: 331 CALQEALEDVEDNSVGKLFRLDN 353


>gi|312114249|ref|YP_004011845.1| ATP-dependent endonuclease of the OLD family [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219378|gb|ADP70746.1| putative ATP-dependent endonuclease of the OLD family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 543

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 120/357 (33%), Gaps = 41/357 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSP----GRGFRRA 59
           + I+ + I  F+ +     + FD    I VG+N  GK+ +LEAI         G+  R  
Sbjct: 1   MYIEKVKIKNFKCFEGWFEVDFDQGVNIIVGNNEAGKSTLLEAIHLCLTGMLNGKYLRNE 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNK 118
               +        +      +      +I I+L    +D ++  L+ N        E N 
Sbjct: 61  LSPYLFNRNIERAYLDSLATKAPLQPPEIQIELFLDGEDDALEELRGNGN-----SEKND 115

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR-MIDFERLMRGRNRLLTEGY 177
             R        D+ + G          + + +I     +    +F R    +  +     
Sbjct: 116 KARGLLFSIEFDKKYDG--AYTELLKGKEINSIPLEFYQVQWSEFSR----QPAMARTIP 169

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
             S+   S          ++       I+ +    ++  ++         L      K D
Sbjct: 170 IKSALIDS-------TSTRVQSGSDMYISRIVREFLDDKERVAISQAHRKLKDAF--KAD 220

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ---KV 294
            +  A+ E  A+     RK  S+S   +   +  +  +    + +   +   GEQ   K 
Sbjct: 221 GNVGAINERLAEAAKISRKKVSIS-VDMSSHNAWESSLMTYIEDVPFHYIGKGEQCIVKT 279

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFMTG 349
                 LA   L S     A +LL++E   HL   K N L   ++  + G Q+ +T 
Sbjct: 280 -----RLA---LSSKKNSEATVLLIEEPENHLSHSKLNQLISDISTDNSGKQVIITT 328


>gi|318076728|ref|ZP_07984060.1| putative chromosome segregation protein [Streptomyces sp. SA3_actF]
          Length = 470

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 97/279 (34%), Gaps = 29/279 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKAMTLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+              ++  +G   I         T         QIN    R
Sbjct: 61  MEDVIFAGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTIARTMFRNGGSEYQINGDTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +     M RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEASGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY-VQKENFP 222
           + +R  + +             +  Q+  LG +  +AR      + + + +  ++  +  
Sbjct: 176 KALRKLDAMRANLARVQDLTDELRRQLKPLGRQAAVARRA--AVIQADLRDARLRLLSDD 233

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            + L      +   + +    KE     L      ++  
Sbjct: 234 LVTLRRALDAEVADEAALKERKEAAESALKTALAREARL 272


>gi|294788566|ref|ZP_06753808.1| ATP binding protein [Simonsiella muelleri ATCC 29453]
 gi|294483443|gb|EFG31128.1| ATP binding protein [Simonsiella muelleri ATCC 29453]
          Length = 458

 Score = 69.9 bits (170), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 59/394 (14%), Positives = 137/394 (34%), Gaps = 42/394 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAI-----SFLSPG 53
           +++K + +     +  L +          + T+F+G+NG GKT +L+++        +  
Sbjct: 1   MQVKSITLHNIGQFKELTIPLAPFNDNAPKVTVFIGNNGSGKTTVLKSLVTALNWLSARI 60

Query: 54  RGFRRASYA---DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           R  R        +V   G  S       +      A+ S   +    +  R  Q     +
Sbjct: 61  RSERGRGLDIPEEVIMNGQSSGMVV---LNVNVKNAEQSFTWQISKSKQGRKNQF-STDL 116

Query: 111 RVVDELNKHLRISWLVP--SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           + ++ L    R +      +   I +   +ER   LD  +   +     ++  ++  +  
Sbjct: 117 KAINSLADIYRTNLTENAQADLPILAFYPVER-SVLDIPLKIREKHSFEQINGYDNAL-- 173

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
            N  +    F   W  + E    E+   I     E++N L       + +     +K +L
Sbjct: 174 -NMGVDFRRF-FEWFRNEEDAENEIYKDIPKLPPELVNILR---QHNIDRAVVEKVKDNL 228

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
               +   +++  A  ++  ++     ++    +       +  ++V   ++   +   S
Sbjct: 229 HQAENRLKNETKLAYVKQAIQEFTGFEEIHIQRK------PKQKMLVRKNNQEFDVIQLS 282

Query: 289 TGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-- 341
            GE+ ++ +       LA     + N      I+++DE   HL    +  L   +T    
Sbjct: 283 QGEKSLMALVGDIARRLAMLNPSLENPLNSQGIVMIDEADLHLHPQWQRQLIARLTKTFP 342

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
             Q F+  T   +  S ++      + N +   I
Sbjct: 343 NCQ-FVLSTHSPLVISDSKDIVVYSLENGEMQQI 375


>gi|296412128|ref|XP_002835778.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629571|emb|CAZ79935.1| unnamed protein product [Tuber melanosporum]
          Length = 1148

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 100/304 (32%), Gaps = 32/304 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           I  +    F  Y ++  +      + +G NG GK+ I+ AI  L  G       R    +
Sbjct: 105 IVRIKAENFVTYTAVEFLPGPNLNMVIGPNGTGKSTIVCAIC-LGLGSSPANLGRAKEIS 163

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELNKHL 120
           +  + G  +       ++G E   +  IK +   + +     +N        + +L K  
Sbjct: 164 EFVKHGCDTA-VIEIELQGKENERNPIIKRKIGRENNTSTFTLNGSPSTPGKITKLVKSY 222

Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
            I        +P    +                 A  P       + ++L + R  LL E
Sbjct: 223 NIQIDNLCQFLPQDRVVEFAGLTAIDLLTHTQRAAAPPEILGHHENLKKLGKNRKELLNE 282

Query: 176 GYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSSLIMEYVQKENFPHIKLS 227
              D +  +S+EA+ A L   +         I R+E++      +   V +      K +
Sbjct: 283 LEIDRNQLASMEARQAALQQDVERLRERQEIIKRIELLEKAKPFVKYRVARSLAKDAKDA 342

Query: 228 LT------GFLDGKFDQ--SFCALKEEYAKKLFD---GRKMDSMSRRTLIGPHRSDLIVD 276
                     L+ + +        K  Y K L      RK +  ++   +   + D+I  
Sbjct: 343 SKVAERELRELEQQVEPMTEAPKAKRRYQKALERCVVARKKELEAKEAAVTKFKDDVIGK 402

Query: 277 YCDK 280
             +K
Sbjct: 403 ADEK 406


>gi|326771794|ref|ZP_08231079.1| chromosome segregation protein SMC [Actinomyces viscosus C505]
 gi|326637927|gb|EGE38828.1| chromosome segregation protein SMC [Actinomyces viscosus C505]
          Length = 435

 Score = 69.5 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/210 (19%), Positives = 80/210 (38%), Gaps = 26/210 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L I  F+++AS   L  +   T  VG NG GK+N+++A++++      +  R  S
Sbjct: 22  VHLKTLTIKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDALTWVMGEQGAKNLRGGS 81

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
            ADV   G+ S            ++  +G   I    + +            +IN    R
Sbjct: 82  MADVIFAGAGSRPALGRAEVSLTIDNTDGALPIDYTEVTISRTLFRGGGSEYRINGSPCR 141

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L + + +      +D + +    +RR F++     +  R        E
Sbjct: 142 LLDVQELLSDTGLGRQMHVIVGQGQLDAVLTATPEDRRGFIEEAAGVLKHR-----KRKE 196

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           R +R    +  +    +     +  Q+  L
Sbjct: 197 RALRKLESMAADLARVADLTQELRRQLGPL 226


>gi|116754465|ref|YP_843583.1| chromosome segregation protein SMC [Methanosaeta thermophila PT]
 gi|116665916|gb|ABK14943.1| condensin subunit Smc [Methanosaeta thermophila PT]
          Length = 1171

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 23/164 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + +  F+++     +       +  G NG GK+NI++A+ F   L+  R  R   
Sbjct: 1   MHIKEIELRNFKSFGRRALVQLKKDFIVVTGPNGSGKSNIIDALLFSLCLTSSRAMRAER 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--------- 111
             D+   G       FA V      +  ++ +++ +    R +++N              
Sbjct: 61  LPDLIYRGDDGRAPDFAEVTVRLDNSTRTMPVDSDEVVITRRIKVNGERYHAQHYLNGRA 120

Query: 112 -VVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145
               EL +HL  + + P          + RI      ERRR +D
Sbjct: 121 CTQAELQEHLARAGITPEGYNVVMQGDVTRIIEMGPTERRRIID 164


>gi|237785776|ref|YP_002906481.1| chromosome segregation protein [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758688|gb|ACR17938.1| chromosome segregation protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 1194

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 103/298 (34%), Gaps = 43/298 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +      VG NG GK+N+++A++++      +  R  S
Sbjct: 1   MYLKSLTLKGFKSFASSTTLKLEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKSLRGGS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ +            ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MDDVIFAGTGARKPLGRAEVTLTIDNSDGALPIDYSEVSITRRVFRDGGGEYEINGARAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR +++     +  R        E
Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGRLSTILESKPEDRRAYIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFD--SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           +    R  +  +   D      + +E Q+  L       R       ++ +   +++   
Sbjct: 176 KA--QRKLVSMQANVDRLRDLTTELERQLKPLA------RQAEAAQKAATVQSDLREARL 227

Query: 222 PHIKLSLTGFLDGKFD-----QSFCALKEEYAKKLFDGRK--MDSMSRRTLIGPHRSD 272
                SL    D   +           +E   +KL + R+   +   R   +GP   +
Sbjct: 228 NLAAHSLVTARDDADELTRRANEAREKEEALVEKLEELREHVDELEHRVAELGPRSEE 285


>gi|171915571|ref|ZP_02931041.1| ATPase [Verrucomicrobium spinosum DSM 4136]
          Length = 435

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 63/396 (15%), Positives = 124/396 (31%), Gaps = 81/396 (20%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  + I  FR    L L FD + T+ VGDNG GKT+IL A+S  + G           
Sbjct: 1   MRIVSIQIDNFRGIKHLGLEFDPRFTLLVGDNGSGKTSILSALSV-ALGIWHVSK----- 54

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+  + +       M+       ++  RD+   R  Q    V               
Sbjct: 55  IVSGAKQWRNI------MDHEVH---EVLGRDENGQRQFQPAGPVQITATGSIGDRSAHA 105

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR---LLTEGYFDSS 181
                          + R +D+         +  +         R     LL       +
Sbjct: 106 WT-------RRKRARKSRTVDQWATQTVTDIQAALA----AREQRQEALPLLAYYGAGRA 154

Query: 182 WCSSIEAQMAELGVKI-----------NIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
           W  S E ++A+L   +              R+ + + +   +++  +++     K +   
Sbjct: 155 WLPSNERELADLSGDLKSRPEDGYYDCLSERIRVKDVIKWFVLQAAKRDESGQFKPAFEA 214

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            +     +    + E Y   L                  + +++V    K     + S G
Sbjct: 215 -VRLALKRGIPGIDEIYWDHL------------------KGEVVVSIHGKPQPFTNLSHG 255

Query: 291 EQ-----------KVVLVGIFL-------AHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           +            + V +   L       AH   + + T    ++L+DE+  HL  + + 
Sbjct: 256 QMTMAATLADMAIRAVSLNSHLLGNGGGSAHPEQLLDQT--PGVVLIDEVDVHLHPEWQR 313

Query: 333 ALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMR 366
           ++ +  T      Q   +     VF  L +    + 
Sbjct: 314 SVIKDFTGTFPKVQFICSSHSPQVFGELPKDQILVH 349


>gi|237741549|ref|ZP_04572030.1| exonuclease SbcC [Fusobacterium sp. 4_1_13]
 gi|229429197|gb|EEO39409.1| exonuclease SbcC [Fusobacterium sp. 4_1_13]
          Length = 921

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 55/170 (32%), Gaps = 17/170 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62
           + IK + +  +R++++  + F     + +G NG GKT+ILEAIS +      R       
Sbjct: 1   MIIKKVQLENYRSHSNTTVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-----NDVVIRVVDELN 117
              + G  S       +       ++  +      +      I     +  +   ++EL 
Sbjct: 61  SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDIIGSEYDGDIQEKLEELC 120

Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157
              +         +         IF     +R    +R+    I      
Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNRIFNTQIYKEMYD 170


>gi|148652279|ref|YP_001279372.1| SMC domain-containing protein [Psychrobacter sp. PRwf-1]
 gi|148571363|gb|ABQ93422.1| condensin subunit Smc [Psychrobacter sp. PRwf-1]
          Length = 1280

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 110/334 (32%), Gaps = 71/334 (21%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K L +S F+++A+     F    T  VG NG GK+N+++AI ++   S  +  R  +
Sbjct: 1   MRLKSLKLSGFKSFANPTTFSFRHGITAIVGPNGCGKSNVIDAIRWVLGESSAKQLRGGA 60

Query: 61  YADVTRIGSPS-FFSTFARVE-----------GMEGLADISIKLETR---DDRSVRCLQI 105
            +DV   G+ +    + A VE           G+    ++  +L  R   +        I
Sbjct: 61  MSDVIFAGTQNKAAKSLASVELTFEHTQDEQTGIRHELNLYHELSVRRQINGEGKSDYFI 120

Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
           N    R  D         L            + RI     ++ R F++            
Sbjct: 121 NGTRCRRRDVVDVFLGTGLGPRSYSVIQQGMIGRIVDSSPLQLREFIEEAAG-------- 172

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
            +  ++       + L     +      IEA+++    K+           ++   +  Q
Sbjct: 173 -VSRYQARREETQKKLLRTRENLERLQDIEAELSRQKKKLAKQ-----AESATHYQQLQQ 226

Query: 218 KENFPHIKLSLTGFLDGKFDQS-FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
           + +    +L        K  Q    A +E+  K L   +  DSM +              
Sbjct: 227 QLSEVKEQLGTQQLYQAKAAQMQHKAEQEQLTKSLEAQQAQDSMLK-------------- 272

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
                          QK+  V   LA  + + + 
Sbjct: 273 ---------------QKLAKVSARLAEEQWLKDE 291


>gi|289763098|ref|ZP_06522476.1| chromosome partitioning protein smc [Mycobacterium tuberculosis GM
           1503]
 gi|289710604|gb|EFD74620.1| chromosome partitioning protein smc [Mycobacterium tuberculosis GM
           1503]
          Length = 883

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      ++ I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           + +R  + +       +   + +  Q+  LG
Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206


>gi|225022005|ref|ZP_03711197.1| hypothetical protein CORMATOL_02037 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945291|gb|EEG26500.1| hypothetical protein CORMATOL_02037 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 837

 Score = 69.5 bits (169), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 99/275 (36%), Gaps = 37/275 (13%)

Query: 3   NRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRR 58
             + +K L +  F+++AS   L F+    + VG NG GK+N+++A++++      +  R 
Sbjct: 2   TEVYLKSLTLRGFKSFASATTLKFEPGICVVVGPNGSGKSNVVDALAWVMGEQGAKTLRG 61

Query: 59  ASYADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVV 109
               DV   G+              ++  +G  DI     +   R  R      +IN   
Sbjct: 62  GKMEDVIFAGAGGRKPLGRAEVTLTIDNSDGALDIDYTEVSVTRRMFRDGASEYEINGSK 121

Query: 110 IRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
            R++D         + + + +      + +I      ERR F++                
Sbjct: 122 ARLMDIQELLSDSGIGREMHVIVGQGRLSQILESRPEERRAFIEEAAG------------ 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
              +++ R R         S  ++++  + +L  ++      +     +       + + 
Sbjct: 170 ---VLKHRRRKEKAQRKLVSMQANLDR-LTDLTGELRRQLKPLARQAEAARRAATVQADL 225

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
              +L L G+   +  +   + +E+ A  L    +
Sbjct: 226 REARLRLAGYELTQLQEKLGSAEEQTAMLLAQVEE 260


>gi|296329389|ref|ZP_06871889.1| ATPase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296153509|gb|EFG94327.1| ATPase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 923

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 60/171 (35%), Gaps = 17/171 (9%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY-- 61
           ++ IK + +  +R+++++ + F     + +G NG GKT+ILEAIS +      R      
Sbjct: 2   KMIIKKVQLENYRSHSNITVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRSGKETG 61

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQI----NDVVIRVVDEL 116
               + G  S       +       ++  +  +T+  +      I    +  +   ++EL
Sbjct: 62  KSYIKFGEKSSKVDINFIANDGREYNLKTEFFKTKPKKQTLKDMIGSEYDGDIQEKLEEL 121

Query: 117 NKHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157
               +         +         IF     +R    +++    I      
Sbjct: 122 CGIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 172


>gi|311739746|ref|ZP_07713581.1| chromosome segregation protein Smc [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305562|gb|EFQ81630.1| chromosome segregation protein Smc [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 1173

 Score = 69.5 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 21/171 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATSLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MQDVIFAGAGDRKALGRAEVTLTIDNADGALPIEYSEVSVTRRMFRDGASEYEINGSKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
           ++D         + + + I      +  I      +RR +++     +  R
Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLSEILESRPEDRRSYIEEAAGVLKHR 171


>gi|255325271|ref|ZP_05366377.1| chromosome segregation protein SMC [Corynebacterium
           tuberculostearicum SK141]
 gi|255297836|gb|EET77147.1| chromosome segregation protein SMC [Corynebacterium
           tuberculostearicum SK141]
          Length = 1173

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 21/171 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATSLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MQDVIFAGAGDRKALGRAEVTLTIDNADGALPIEYSEVSVTRRMFRDGASEYEINGSKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
           ++D         + + + I      +  I      +RR +++     +  R
Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLSEILESRPEDRRSYIEEAAGVLKHR 171


>gi|238750413|ref|ZP_04611914.1| SMC protein-like protein [Yersinia rohdei ATCC 43380]
 gi|238711344|gb|EEQ03561.1| SMC protein-like protein [Yersinia rohdei ATCC 43380]
          Length = 673

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 74/415 (17%), Positives = 124/415 (29%), Gaps = 78/415 (18%)

Query: 5   IKIKFLNISEFRNYASLR----LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           + I  + I  FR + S      L  +   T  VG+N  GKT +++AI  +   R      
Sbjct: 1   MYISEIRIENFRLFGSAEKAFVLSLNPGLTALVGENDAGKTAVVDAIRLVLGTR------ 54

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADIS----------------IKLETRDDRSVRCLQ 104
             D  RI    F  T    E  + +                    +  ET  +     L 
Sbjct: 55  DQDFLRIDPDDFHQTMPNAERADQVVIRLTFSGLTVVDRGAFSEFLTYETIGEAVETVLI 114

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFE 163
           I  V  R   E     R   L P     +   +M    FLD      +   + R + D E
Sbjct: 115 ITWVAKRNTKE--GSSRRV-LPPE----WRTGAMGDGPFLDLGARSLLTATYLRPLRDAE 167

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R M              S  S    Q+ +   +I    +     +   +   +       
Sbjct: 168 RAM---------SAGRGSRLS----QILQHTKEIRDTGIAFNRHVDPPVDPKMLSVLGLG 214

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD------- 276
              S          Q+   L EEY   L         ++  +      +  +        
Sbjct: 215 DYASYLFGESEGIKQAHKRLNEEYLAPLSFANDK-LSAQIGVANTQEDNFRLRQLLEKLE 273

Query: 277 --YCDKAITIAHGSTGEQKVVLVG----IFLA-HARLISNTTGFAPILLLDEISAHLDED 329
                 A   +H S G      +G    +F+A    L++  +   P+LL++E  AHL   
Sbjct: 274 LTLTGSAEADSHISRG------LGSNNLLFMACELLLLAAESDGFPLLLIEEPEAHLHPQ 327

Query: 330 KRNALFRIVT---------DIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           ++  L   +              QI +T    ++   L+       I   +A  +
Sbjct: 328 RQLRLMSFLQEQAKQERADHQRIQIIVTTHSPNLASDLHLD-NIALIEGGRAFPL 381


>gi|213964604|ref|ZP_03392804.1| chromosome segregation protein SMC [Corynebacterium amycolatum
           SK46]
 gi|213952797|gb|EEB64179.1| chromosome segregation protein SMC [Corynebacterium amycolatum
           SK46]
          Length = 1164

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/300 (16%), Positives = 99/300 (33%), Gaps = 34/300 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   + F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASATTMKFEPGICAVVGPNGSGKSNVVDALAWVMGEHSAKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I  K  +   R  R      +IN   +R
Sbjct: 61  MEDVIFAGTSGRKPLGRAEVTLTIDNSDGALPIQYKEVSVTRRMYRDGASEYEINGSRVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + I      + +I      ERR F++     +  R        E
Sbjct: 121 LMDVQELLSDTGIGREMHIIVGQGRLSQILESRPEERRAFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIA-RVEMINALSSLIMEYVQKEN 220
           +    R     +   D        +  Q+  L  +   A R + + A        +   +
Sbjct: 176 KA--QRKLQSMQANLDRLQDLTGELSRQLKPLKRQAEAASRAQTVQADLRDAKLRLAAAD 233

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS---DLIVDY 277
           F  ++ SL                     ++   R  +  +    I P      DL    
Sbjct: 234 FVDLQDSLNDIAGQAKLIEEKVETATERAEIAAERTAELEAELEDITPAADAARDLWFRL 293


>gi|300172911|ref|YP_003772076.1| chromosome partition protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299887289|emb|CBL91257.1| Chromosome partition protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 1184

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/295 (18%), Positives = 104/295 (35%), Gaps = 36/295 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+K L IS F+++A   +  F    T  VG NG GK+NI+EAI ++   +     R   
Sbjct: 1   MKLKSLEISGFKSFADKTIIEFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKDLRGTK 60

Query: 61  YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
            +DV   G +       + V      +D  +K E  + R  R L        QIN V  R
Sbjct: 61  MSDVIFGGTNKRHALNRSEVSMTFDNSDRYVKSEFNEIRITRKLYRSGESTYQINGVDSR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
            + ++++    + L      I S             ERR  ++ +       +++     
Sbjct: 121 -LRDIHELFMDTGLGRESFSIISQGRVEGIFNAKPEERRGIIEEVAGVYK--YKQNKERA 177

Query: 163 ERLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKINIA-RVEMINALSSLIMEYVQ 217
           ++ +   +  L       Y        +  Q A+    I    R E ++ L   +     
Sbjct: 178 QKELTQTSDNLARVANIIYEIQGRIEPLAEQSAQAIDYIAQKERFETLDTLKLALTHRTL 237

Query: 218 KENFPHIKLSLT------GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
           +     +   +         +    D    +L E+  +++      D + +  L 
Sbjct: 238 ETQIKDVTTQVEVQDGRVNQIKSTLDVLHKSLSEKRQERISMQLMRDKVQQDILH 292


>gi|170017642|ref|YP_001728561.1| Barmotin [Leuconostoc citreum KM20]
 gi|169804499|gb|ACA83117.1| Barmotin [Leuconostoc citreum KM20]
          Length = 1184

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 103/294 (35%), Gaps = 34/294 (11%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+K L IS F+++A   +  F    T  VG NG GK+NI+EA+ ++   +     R   
Sbjct: 1   MKLKSLEISGFKSFADKTIIEFMPGMTGIVGPNGSGKSNIIEAMRWVMGEQSAKDLRGTK 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             DV   G+        A V       D  +  +  + R  R L        QIN V  R
Sbjct: 61  MTDVIFGGTNMRGALNRAEVSMTFDNTDHYVNSDFSEIRITRKLYRSGDSSYQINGVESR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+     RR  ++ +      ++++     +
Sbjct: 121 LRDVHDLFIDTGLGRESFSIISQGRVESIFNAKPENRRAIIEEVAG--VHKYKQNKDRAQ 178

Query: 164 RLMRG-RNRLLTEG---YFDSSWCSSIEAQMAELGVKINIA-RVEMINALSSLIMEY--- 215
           + +   R+ L       +        +  Q A+    +    R E +N L   +  +   
Sbjct: 179 KELTQTRDNLARVADIIHEIQGRLDPLAEQSAQATDYLAQKERFEALNRLQLALTHHDLE 238

Query: 216 ---VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
              ++          L      K D    AL ++  +++      D + +  L 
Sbjct: 239 LKIIEATRRAESNDGLVNQDKTKLDVLNKALADKRQERISAQLLRDKLQQNILH 292


>gi|20094127|ref|NP_613974.1| SMC1-family ATPase [Methanopyrus kandleri AV19]
 gi|49036452|sp|Q8TXI4|RAD50_METKA RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|19887131|gb|AAM01904.1| SMC1-family ATPase involved in DNA repair [Methanopyrus kandleri
           AV19]
          Length = 876

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 102/299 (34%), Gaps = 49/299 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + I   R+++S  + F     + VG NG GKT +LEAI+     R FR  SY  + R
Sbjct: 2   IERVKIENLRSHSSTEIEFREGINVLVGPNGAGKTTVLEAITLALFPRTFR--SYDHMIR 59

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------------QINDVVIRV 112
            G                   +  +      +    L              +  DV   V
Sbjct: 60  EGERRAVVEVVFWGADGHKYKVRREFYRGGGQRNPRLYREEGDGWKVVASGRAEDVDREV 119

Query: 113 VDELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
           ++ L    R  +          + ++      ER+R +DR +          + +F++  
Sbjct: 120 MNALGGVDRDVFREAVYIRQGEIAKLVEATREERKRIVDRTLG---------LAEFKKAR 170

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARV--------EMINALSSLIMEYVQ 217
              + LL           +   ++ +L G K  + RV          +  L   + E  +
Sbjct: 171 EQAHELLRVAEAK---LETFRERVRDLKGSKKELKRVERELEELKREVKELEPEVEELKE 227

Query: 218 KENFPHIKLSLTGFLDGKFD------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
           + N           L+G+        +S    +++  K + +G++ +   +R    P +
Sbjct: 228 RLNELREAKREFERLEGELRLLENKIESLKGRRDDLRKLVEEGKEAERELQRLGDVPSK 286



 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 37/189 (19%), Positives = 70/189 (37%), Gaps = 27/189 (14%)

Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLT-------GFLDGKFDQSFCALKEEYAK 249
           +   R E+   +        +KE    +   L+          D   ++   A++ E +K
Sbjct: 687 MEKRREELKKQVRKYREAKERKERLERVVEVLSLCKEVFRYSRDVAREKVLPAVEREASK 746

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDY---CDKAITIAHGSTGEQKVVLVGIFLAHARL 306
            L      D   R   +       ++         I     S GE+ ++ + + LA   L
Sbjct: 747 IL-----QDLSDRYGSLRIEDDGAVIRVSVPGGHFIEADRMSGGEKIIIGLALRLA---L 798

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS------QIFMTGTDKSVFDSLNE 360
               + FAP ++LDE + HLD + R  L + + ++        Q  +   D+ + D+ +E
Sbjct: 799 AMVGSSFAPFIMLDEPTVHLDAEHRERLAQALRELDLGKGRVRQAIVVTHDEELEDAADE 858

Query: 361 TAKFMRISN 369
                RI N
Sbjct: 859 ---LWRIEN 864


>gi|330960291|gb|EGH60551.1| ATP binding protein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 441

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 6/111 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  +R +A   + FD Q TI    NG GKT++LEAI  ++    F  +    V
Sbjct: 1   MNLTRLCLKNYRRFAEFDIEFDPQLTIISARNGQGKTSVLEAI--VAALGPFVGSFDQGV 58

Query: 65  TRIGSPSFFSTFARV-EGMEGLA--DISIKLETRDDRSVRCLQINDVVIRV 112
           +R       + +ARV EG E      + I  E  +        +N    R 
Sbjct: 59  SRH-IERTDARYARVGEGFESEQQFPVVISAEMSNPAMRWQRALNGPKSRT 108


>gi|87300613|ref|ZP_01083455.1| hypothetical protein WH5701_04175 [Synechococcus sp. WH 5701]
 gi|87284484|gb|EAQ76436.1| hypothetical protein WH5701_04175 [Synechococcus sp. WH 5701]
          Length = 568

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 69/404 (17%), Positives = 138/404 (34%), Gaps = 75/404 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  + I  FR    L +      T+ +G+N  GKT+ILEAI          R     V
Sbjct: 1   MQLTKIAIKNFRGIEELEIDLAP-CTVLIGENNTGKTSILEAIYTCLS-----RNLARKV 54

Query: 65  TRIGSPSFFSTFA---------------RVEGMEGLADISIKL---ETRDDRSVRCLQIN 106
              G   F  T A                VE  EG    +I     +    R+   L+I 
Sbjct: 55  VPFGDYDFHLTAAMPDPSSSPPIELNFTFVESEEGEWPDAIVQAFDKAYQARADNRLEIR 114

Query: 107 DVVIRVVDELNKHLRISWLVPSM-DRIFSGLSMERRRFLDRMVFAIDPR-HRRRMIDFER 164
             V+   D  +K   + W    + D   +G    +   L R +  ++P      + D   
Sbjct: 115 FRVVAAYDPASKDFFLDWTFRDLADNELTGAKSPQ---LVRELQQLNPVFFLAAVRDAGH 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
             +GR++       +     +  A++            E I A++ +I++     +    
Sbjct: 172 HFQGRSQFWGSFTKNPQIDDATRAEL-----------EEQIEAINQIILDSHTPFDEVKT 220

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
           +++ TG L         +++   A+        D +++  +       L      K    
Sbjct: 221 QVAKTGRLVPLASTDLVSVEAIPARIF------DMLNKTQV------KLAARGGAKLPIT 268

Query: 285 AHGSTGEQKVVLVGI-------FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
            HG+ G Q + ++ +        LA A          P+L L+E  +HL      +L+++
Sbjct: 269 QHGA-GTQSLSVLFLFEAFLNSRLAEAY----DPDSEPLLTLEEPESHLHPSAVRSLWQV 323

Query: 338 VTDIGSQIFMTGTDKSVFDSLN-----------ETAKFMRISNH 370
           ++ I  Q  +      +  ++               +  +++  
Sbjct: 324 LSGIRGQKIIATHSGELIAAVPLHSIRRLARKAGKVEVFQVNEG 367


>gi|219851419|ref|YP_002465851.1| SMC domain protein [Methanosphaerula palustris E1-9c]
 gi|219545678|gb|ACL16128.1| SMC domain protein [Methanosphaerula palustris E1-9c]
          Length = 623

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 68/375 (18%), Positives = 127/375 (33%), Gaps = 65/375 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRG---- 55
           + ++ ++IS ++N+  +  + F +   + VG+NGVGK++I++AI  +      GR     
Sbjct: 1   MFLEKISISGYKNFNENFEICFSSGLNVLVGENGVGKSSIIDAIRLILSEDEYGRSGISE 60

Query: 56  ---FR--------RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
               R              V      S F   A +   E   +  + L   D ++ R   
Sbjct: 61  KDFHRPFVKDSVASNKIKIVAHFDELSDFEEIAFLPWREDKNEARLSLVIDDTQNNR--- 117

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                        ++ R  W          G   +   +   +V  I+  +   + D E 
Sbjct: 118 ------------GRYNRKIW----------GGVSQSNPYEKELVELINCIYLPPLRDAEA 155

Query: 165 LMRG-RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
            +R  R   L     + +    ++A+     +KI        N + +   E + K N   
Sbjct: 156 KLREGRGSRLARLILNLNKEEFLKAKRDGKSLKIEEKVNSFYNDIVNDKNEPIFKAN-EL 214

Query: 224 IKLSLTGFLDGKFDQSF-CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
           IK SL   +   F Q       E    ++ +      +     I  +  +      ++  
Sbjct: 215 IKNSLKNAIGTVFGQDTRIQFSETNINRIIENL---RLFFFPEINQNGQEFNYRSLEEN- 270

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP----ILLLDEISAHLDEDKRNALFRIV 338
                S G   ++ +   LA  R I       P    ILL++E  AHL    +  L + +
Sbjct: 271 -----SLGYNNLIYLATVLAELRPIKEVESDEPEFLKILLIEEPEAHLHPQLQIKLLKYL 325

Query: 339 TD----IGSQIFMTG 349
                    QI +T 
Sbjct: 326 QKETENSNIQIIITT 340


>gi|256844884|ref|ZP_05550342.1| nuclease sbcCD subunit C [Fusobacterium sp. 3_1_36A2]
 gi|256718443|gb|EEU31998.1| nuclease sbcCD subunit C [Fusobacterium sp. 3_1_36A2]
          Length = 921

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 17/170 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62
           + IK + +  +R+++++ + F     + +G NG GKT+ILEAIS +      R       
Sbjct: 1   MIIKKVQLENYRSHSNITVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-----NDVVIRVVDELN 117
              + G  S       +       ++  +      +      I     +  +   ++EL 
Sbjct: 61  SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDIIGSEYDGDIQEKLEELC 120

Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157
              +         +         IF     +R    +++    I      
Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 170


>gi|253578968|ref|ZP_04856239.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849911|gb|EES77870.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 243

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 26/224 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A  +   F    T  VG NG GK+N+ +A+   L     R  R  +
Sbjct: 1   MYLKNIEVQGFKSFAQKINFEFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSARSLRGGN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       + S    ++  +    +    + +  R  RS     +IN    R
Sbjct: 61  MQDVIFSGTETRKPLGYASVAITLDNSDHKLPVDFNEVTVTRRLYRSGESEYKINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +DRI SG   ERR   D     +  + R+     +
Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDRILSGKPEERRELFDEAAGIVKFKRRKN-TTIK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           +L   R  L+      +   S +  Q+  L  +   ARV +   
Sbjct: 180 KLEEERQNLVRV----TDILSELTRQLEPLEKQSETARVYLSKR 219


>gi|237730237|ref|ZP_04560718.1| SMC domain-containing protein [Citrobacter sp. 30_2]
 gi|226905776|gb|EEH91694.1| SMC domain-containing protein [Citrobacter sp. 30_2]
          Length = 534

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/377 (17%), Positives = 128/377 (33%), Gaps = 55/377 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + IS +R Y  L L  +++  + VG N VGK+ ++EAI+    GR   + +  ++  
Sbjct: 2   IKKIKISGYRIYKQLILEPNSKLNLIVGGNEVGKSTLMEAIALALTGRINGKGANDEL-- 59

Query: 67  IGSPSFFSTFARVEGMEGLADI------SIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             +P +F+T    + +E            IK+E   D +     I   +    D      
Sbjct: 60  --NPYWFNTELVADFVERRQRGENISLPEIKIELFFDNTPELQNICGAINS--DHPTNAC 115

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPR--HRRRMIDF--ERLMRGRNRLLT 174
                           S         ++    I P   +R     F  E+L+        
Sbjct: 116 PGVLFH------VLPNSEYNEEIEQWLISPTKILPVEFYRIEWRSFADEKLL-------- 161

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                    + I+++       I+    ++IN   + I       ++  +K S+ G + G
Sbjct: 162 -NRPRQLTTAIIDSKTVRSSTSIDYHLRQIINDHLAPIERAKISLSYRQVKASMAGGVLG 220

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG---PHRSDLIVDYCDKAITIAHGSTGE 291
             ++    L      K      MD  SR +  G   PH +++                G+
Sbjct: 221 DINERISKLNASLHDKTI-ILDMDQSSRTSWEGVVSPHVNEVPFSMSG---------QGQ 270

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMT 348
           Q  + + + +               ++++E   HL     + L   +  +     Q+F+T
Sbjct: 271 QAAIKISLSMG------RHAEKTKFVMIEEPENHLSHTSLSTLLSRIEKLSSTSQQLFIT 324

Query: 349 GTDKSVFDSLNETAKFM 365
                V + L   +  +
Sbjct: 325 THSTFVLNRLGLDSLIL 341


>gi|31794098|ref|NP_856591.1| chromosome partition protein Smc [Mycobacterium bovis AF2122/97]
 gi|121638803|ref|YP_979027.1| putative chromosome partition protein smc [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224991295|ref|YP_002645984.1| putative chromosome partition protein [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|31619693|emb|CAD96633.1| PROBABLE CHROMOSOME PARTITION PROTEIN SMC [Mycobacterium bovis
           AF2122/97]
 gi|121494451|emb|CAL72932.1| Probable chromosome partition protein smc [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224774410|dbj|BAH27216.1| putative chromosome partition protein [Mycobacterium bovis BCG str.
           Tokyo 172]
          Length = 1205

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      ++ I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           + +R  + +       +   + +  Q+  LG
Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206


>gi|281416945|ref|ZP_06247965.1| SMC domain protein [Clostridium thermocellum JW20]
 gi|281408347|gb|EFB38605.1| SMC domain protein [Clostridium thermocellum JW20]
          Length = 696

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/399 (15%), Positives = 138/399 (34%), Gaps = 78/399 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGF------ 56
           + I  + I  FRN+      F+    + +G N  GK+N+++A++ +  S  +        
Sbjct: 4   MYISKIQIKNFRNFKQFEAHFNNGINVIIGHNNSGKSNLIKALALIFDSNTKKHLEIDDF 63

Query: 57  -RRASYADV------------TRIGSPS------FFSTFARVEGMEGLADISIKLE---T 94
            +  S  D+                           +    +  +E   +  +  E    
Sbjct: 64  NKYISLEDLKNEPPKISIAITITQQEDENLMSDDLVTISNWLTKLEEPYEALLTYEFMLP 123

Query: 95  RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
             +      ++N++     +E+ + +   +L     +I+ G  + +       +   D +
Sbjct: 124 VKEHERYKKKVNNLE--KEEEIWEVINRDFLRLYTYKIWGGDPINKTVADSESLQKFDFQ 181

Query: 155 HRRRMIDFER-LMRGRNRLLT---------EGYFDSSWCSSIEAQMAELGVKINIARVEM 204
               + D ER +  GRN LL          +   D     + + +++E+     I R   
Sbjct: 182 FLNAIRDVERDMFTGRNTLLKSVLDFFIDYDIKSDKE--KTEDEKLSEISE---IKRKFS 236

Query: 205 INA--LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK-KLFDGRKMDSMS 261
           I+A  L   + + ++K       LS    +   FD S+       +  +L+    +    
Sbjct: 237 IDANNLIKSLQKRMEK--GKKEILSYAYNIGASFDNSYPNFDGNISDVQLYSALSLIVEY 294

Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR------LISNTTGFAP 315
           +  +  P   +  + Y +              ++ + + LA  +       + +     P
Sbjct: 295 KTGIKIPVSHN-GLGYNN--------------LIFMALLLAKMQINSDGTYLGSNAKVFP 339

Query: 316 ILLLDEISAHLDEDKRNALFRIV-----TDIGSQIFMTG 349
           IL+++E  AHL    +  L + +      +   QIF+T 
Sbjct: 340 ILVIEEPEAHLHPSMQYQLLKFLNTNIKQNKVRQIFVTT 378


>gi|296117610|ref|ZP_06836194.1| putative RecF/RecN/SMC N domain protein [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295969341|gb|EFG82582.1| putative RecF/RecN/SMC N domain protein [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 1152

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 21/187 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MQDVIFAGAGDRKALGRAEVTLTIDNRDGALPIDYAEVSVTRRMFRDGASEYEINGAKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + I      +  I      +RR +++     +  R R+     +
Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLAEILESRPEDRRSYIEEAAGVLKHRRRKDKAQRK 180

Query: 164 RLMRGRN 170
                 N
Sbjct: 181 LTGMQAN 187


>gi|320449560|ref|YP_004201656.1| putative ATP-dependent endonuclease of the OLD family [Thermus
           scotoductus SA-01]
 gi|320149729|gb|ADW21107.1| putative ATP-dependent endonuclease of the OLD family [Thermus
           scotoductus SA-01]
          Length = 528

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/211 (21%), Positives = 73/211 (34%), Gaps = 27/211 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS-----PGRGFR---- 57
           +K L +  FR    + L      T  VG NG GKT IL AI  +        R FR    
Sbjct: 2   LKRLQVKNFRCLEDIDLPLGP-LTAIVGPNGAGKTTILRAIDLVLGDVWPSLRSFRIPQD 60

Query: 58  -----RASYADV-TRIG----SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                     ++           SF  T  R+      AD  + LE  D+        + 
Sbjct: 61  FINFDTTRAIEITVHFDPPYTQGSFNITAFRLTCKGEDADFHVDLEPLDEGGNVPRYPSG 120

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
             +RV  ++  H R+ +L      +   L   R   L R++  +     +   +F+++  
Sbjct: 121 NPLRVGTDMRNHARVLFLD-HRRNLAQHLPSIRGSILGRLLQPVRREF-KLQDNFKQVYE 178

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198
               LL      +     IE  +AE   ++ 
Sbjct: 179 QAMDLLR-----TEQVKQIEKTIAETAKQML 204


>gi|225849062|ref|YP_002729226.1| DNA double-strand break repair Rad50 ATPase [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643582|gb|ACN98632.1| putative DNA double-strand break repair Rad50 ATPase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 884

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 104/290 (35%), Gaps = 45/290 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + I  L +  F  + + ++ F     T  +G+NG GKT+ILE I F   G+  +     D
Sbjct: 1   MIITKLTLKNFLAHDNTQVEFSPSGITAIIGENGSGKTSILEGIMFALFGKSSKGNQ-ID 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR---------CLQINDVVIRVVD 114
           + + G        A VE        + K+    D+  R          ++    V+    
Sbjct: 60  LIKWG-----RNKALVELEFIKNGTTYKIVRELDKKGRTVSSTALLYRIESGRQVLERQK 114

Query: 115 ELNKHLRISWLVPSMDRI-------------FSGLSMERRRFLD-----RMVFAIDPRHR 156
            L + L     +     +                   +R + ++      M   +  ++ 
Sbjct: 115 NLKQELPKITGISEKTFLNSILIRQGEIEGFIKQKPADREKTIEEILDLHMYAKLLEKYA 174

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
            +  ++E+ +     +L     D     S+E Q+  +  +IN     ++N L+       
Sbjct: 175 DKRKNYEKQLE----ILKTEKVDK---QSLEDQIKTITDQINQL-ETVLNQLTQEKQSLE 226

Query: 217 QKENFPHIKLSLTGFLDGK---FDQSFCALKEEYAKKLFDGRKMDSMSRR 263
           Q+ N    K++    L+ +    +     ++++  +     ++++ + ++
Sbjct: 227 QQLNQTEEKINQYSLLENEKRLLETKIDNIEQKIEEINKKIKEIEGLKQQ 276



 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 8/72 (11%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS---- 343
           S G++  + + + LA A+L++     A  L+LDE +  LD++++  L  +  ++      
Sbjct: 797 SGGQRVALSIALRLAIAKLLNE---KADFLILDEPTIFLDDERKKELVDLFGELKESNFI 853

Query: 344 -QIFMTGTDKSV 354
            Q+ +T  D+ +
Sbjct: 854 KQLIITTHDEEL 865


>gi|330506917|ref|YP_004383345.1| hypothetical protein MCON_0715 [Methanosaeta concilii GP-6]
 gi|328927725|gb|AEB67527.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 613

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 120/370 (32%), Gaps = 59/370 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  +++  FRN  SL         + VG+N VGKTN+L+A+   + G  +   + ++ 
Sbjct: 1   MYLSKISVHNFRNLESLEANLSPGLNVIVGENNVGKTNLLDALRV-ALGSAW---NNSEP 56

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             +       +         + D SI ++                  +  EL++  +  +
Sbjct: 57  IHLSKEDLHRS-----SDGNMIDKSIIVDL-----------------IFSELSEEEQAQF 94

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWC 183
           L      I +       +    + F            + R    R+   T    D     
Sbjct: 95  L-----EILNYNPKFPEKSTASIHFEWSWNETNDRGYYRRWGGERSNSETSISEDILQML 149

Query: 184 SS-IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI------KLSLTGFLDGKF 236
           S  +   + +    +   R   +  L  +      K     +       L    F+    
Sbjct: 150 SITLLGALRDASSGLAPGRQNRLGRLLRVSANAHDKAQLEEVISKANNDLEQNPFVRSAE 209

Query: 237 DQSFCALK-----EEYAKKLFDGRKM--DSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           ++   AL+     E   + +    +   D ++    +    SDL +    K IT    S 
Sbjct: 210 EKISMALEGASGPEFKQEAIIRSSEPEFDRIANNLRLVLKISDLDLA-TGKPITRELRSN 268

Query: 290 --GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS---- 343
             G   ++ +   L+    ++      P+LL++E  AHL    +  L   +   G+    
Sbjct: 269 GLGYNNLIYIATVLSELETVAQA--ALPLLLVEEPEAHLHPQLQILLINFLLKRGAGSSE 326

Query: 344 ----QIFMTG 349
               Q+ +T 
Sbjct: 327 THGVQVIVTA 336


>gi|260206241|ref|ZP_05773732.1| putative chromosome partition protein [Mycobacterium tuberculosis
           K85]
 gi|289575627|ref|ZP_06455854.1| chromosome partition protein smc [Mycobacterium tuberculosis K85]
 gi|289540058|gb|EFD44636.1| chromosome partition protein smc [Mycobacterium tuberculosis K85]
          Length = 1205

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      ++ I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           + +R  + +       +   + +  Q+  LG
Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206


>gi|210633203|ref|ZP_03297719.1| hypothetical protein COLSTE_01632 [Collinsella stercoris DSM 13279]
 gi|210159208|gb|EEA90179.1| hypothetical protein COLSTE_01632 [Collinsella stercoris DSM 13279]
          Length = 551

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 124/366 (33%), Gaps = 45/366 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++A    + F+   T+ VG NG GK+N+ +AI   L     +  R  +
Sbjct: 1   MYLKSLTLKGFKSFADRAHMTFEPGLTVIVGPNGSGKSNVSDAILWVLGEQSAKQLRGQA 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS +            ++  + +  +    + +  R  RS      IN    R
Sbjct: 61  MEDVIFSGSSARKPVGVAEVTLVLDNSDHMLPVDFNEVAITRRMYRSGESEYLINSSPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L K          +D I      ERR  ++        +        E
Sbjct: 121 LMDIQDILHDSGLGKDTHSIISQGKLDAILQSRPEERRSLIEEAAGISKHK-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +R    +             I  Q+  L  +++ AR      LSS   E  Q      
Sbjct: 176 RALRKIKSMDEHLTRARDINREISRQLKPLERQVDRARKY--KDLSSRANELTQILAVDE 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
           ++     ++D +      A   E A+     ++ +              L V   +K + 
Sbjct: 234 LRQLQAQWVDLEASSRESAASLELARYRLSEKERELEK-----------LQVMLEEKGLF 282

Query: 284 IAHGSTGEQKVVL--VGIFLAHARLISNTTGFAPILLLDEISAHL--DEDKRNALFRIVT 339
           +     GEQ+  +  V   +     +    G   +  L E+   L   E +R      ++
Sbjct: 283 VGDL--GEQRRHMQDVVGRIGSDMRLLEEKGRNMVARLSEMRGTLSGSEHQRRRTVEELS 340

Query: 340 DIGSQI 345
           D+  Q+
Sbjct: 341 DVNRQL 346


>gi|254304118|ref|ZP_04971476.1| possible ATP-binding protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324310|gb|EDK89560.1| possible ATP-binding protein [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 921

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 17/170 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62
           + IK + +  +R+++++ + F     + +G NG GKT+ILEAIS +      R       
Sbjct: 1   MIIKKVQLENYRSHSNITVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-----NDVVIRVVDELN 117
              + G  S       +       ++  +      +      I     +  +   ++EL 
Sbjct: 61  SYIKFGEKSSKVEIDFIANDGREYNLKTEFFKTKPKKQTLKDIIGSEYDGDIQEKLEELC 120

Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157
              +         +         IF     +R    +++    I      
Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 170


>gi|256005661|ref|ZP_05430618.1| SMC domain protein [Clostridium thermocellum DSM 2360]
 gi|255990349|gb|EEU00474.1| SMC domain protein [Clostridium thermocellum DSM 2360]
 gi|316941016|gb|ADU75050.1| SMC domain protein [Clostridium thermocellum DSM 1313]
          Length = 696

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 61/399 (15%), Positives = 138/399 (34%), Gaps = 78/399 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGF------ 56
           + I  + I  FRN+      F+    + +G N  GK+N+++A++ +  S  +        
Sbjct: 4   MYISKIQIKNFRNFKQFEAHFNNGINVIIGHNNSGKSNLIKALALIFDSNTKKHLEIDDF 63

Query: 57  -RRASYADV------------TRIGSPS------FFSTFARVEGMEGLADISIKLE---T 94
            +  S  D+                           +    +  +E   +  +  E    
Sbjct: 64  NKYISLEDLKNEPPKISIAITITQQEDENLMSDDLVTISNWLTKLEEPYEALLTYEFMLP 123

Query: 95  RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
             +      ++N++     +E+ + +   +L     +I+ G  + +       +   D +
Sbjct: 124 VKEHERYKKKVNNLE--KEEEIWEVINRDFLRLYTYKIWGGDPINKTVADSESLQKFDFQ 181

Query: 155 HRRRMIDFER-LMRGRNRLLT---------EGYFDSSWCSSIEAQMAELGVKINIARVEM 204
               + D ER +  GRN LL          +   D     + + +++E+     I R   
Sbjct: 182 FLNAIRDVERDMFTGRNTLLKSVLDFFIDYDIKSDKE--KTEDEKLSEISE---IKRKFS 236

Query: 205 INA--LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK-KLFDGRKMDSMS 261
           I+A  L   + + ++K       LS    +   FD S+       +  +L+    +    
Sbjct: 237 IDANNLIKSLQKRMEK--GKKEILSYAYNIGASFDNSYPNFDGNISDVQLYSALSLIVEY 294

Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR------LISNTTGFAP 315
           +  +  P   +  + Y +              ++ + + LA  +       + +     P
Sbjct: 295 KTGIKIPVSHN-GLGYNN--------------LIFMALLLAKMQINSDGTYLGSNAKVFP 339

Query: 316 ILLLDEISAHLDEDKRNALFRIV-----TDIGSQIFMTG 349
           IL+++E  AHL    +  L + +      +   QIF+T 
Sbjct: 340 ILVIEEPEAHLHPSMQYQLLKFLNTNIKQNKVRQIFVTT 378


>gi|315146257|gb|EFT90273.1| RecF/RecN/SMC protein [Enterococcus faecalis TX4244]
          Length = 493

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 52/388 (13%), Positives = 129/388 (33%), Gaps = 68/388 (17%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + I  + ++ FR +  +  L F      FVG+N  GKT I +AI               +
Sbjct: 1   MYISKIKLTNFRCFQGTQTLEFCEGMNFFVGNNNSGKTTIFKAI---------------E 45

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             + G     +    +   +    +S+++E R D  +  L  N  + +    L+      
Sbjct: 46  FIQSGK----TKENWISKDKSSEHVSVEIEFRGD-DLDSLIQNSSLKKYSSYLS------ 94

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE-------- 175
                  ++    S E   + D                  + +  +N  +          
Sbjct: 95  ----EDKKLIIMRSSEPGEWTDSKGK-------------TKCLELKNIRIFNPSTKIFEN 137

Query: 176 -GYFDSSWCSSIEAQMAELGVKINIAR----VEMINAL-SSLIMEYVQKENFPHIKLSLT 229
               DS+  +  +AQ     +K    +     +++  L + +  ++ Q E++  ++ +  
Sbjct: 138 PSGIDSTITALFDAQFVYSDLKNEDYQDFGKTKIVGKLINEVTKDFQQDESWRRLQEAHK 197

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI----VDYCDKAITIA 285
                    S     ++  +++ + +   +        P   + +    +   +  +  +
Sbjct: 198 NAFGINGLASTLKKIQKQLEEILEDQYGKTKVEFDFGLPGIENFLKTGNILLEENGVKTS 257

Query: 286 HGS--TGEQKVVLVGIF--LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
                TG Q+ + + +    +     +       +  +DE    L    ++ L   +T+I
Sbjct: 258 VSEKGTGMQRALALSLIQLYSQIDRNNKEFSKPILFFIDEPETFLHPQAQDKLLDSLTEI 317

Query: 342 G--SQIFMTGTDKSVFDSLNETAKFMRI 367
              SQ+F+T     +    N+    ++I
Sbjct: 318 ANTSQVFITTHSPYLLKKFNKQKHQIKI 345


>gi|294993981|ref|ZP_06799672.1| chromosome partition protein SMC [Mycobacterium tuberculosis 210]
          Length = 1205

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      ++ I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           + +R  + +       +   + +  Q+  LG
Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206


>gi|213855770|ref|ZP_03384010.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 64

 Score = 68.8 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 33/64 (51%)

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           + K+++  + LA    ++  +G   + L+D+ ++ LD+++R  L   +    SQ+F++  
Sbjct: 1   QLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAI 60

Query: 351 DKSV 354
               
Sbjct: 61  SAEH 64


>gi|325104296|ref|YP_004273950.1| SMC domain protein [Pedobacter saltans DSM 12145]
 gi|324973144|gb|ADY52128.1| SMC domain protein [Pedobacter saltans DSM 12145]
          Length = 713

 Score = 68.8 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 70/400 (17%), Positives = 142/400 (35%), Gaps = 71/400 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA-SYAD 63
           + I  +++  +RN+A+    F+      +G+NG GKTN+  AI  L      + A    D
Sbjct: 1   MYISKVSLVNYRNFANASFQFNKGINTIIGENGSGKTNVFRAIRLLLEDASLQYAYKLTD 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKL-ETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                   F  +  + +       ISI+  E  D+ +++ L I+ V +   D + K    
Sbjct: 61  ------GDFNRSLDKGKWRGHWIIISIEFDELNDEEAIQSLFIHGVGVAAEDYVKKATYN 114

Query: 123 SWLVPSMD------RIFSGLSMERRRFLDRMVFA---------------IDPR-HRRRMI 160
            +  P  D       +  G +   ++ L+ +                   DP  ++  + 
Sbjct: 115 LFFRPKADIRQKLSELAEGDAAGLQKILNSITIQDNYETFFTGKSTADFNDPDVYKEIVG 174

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           DFE      N +       S + S I  Q++ +  +I+      I AL  ++ ++     
Sbjct: 175 DFE------NVVFPSTIDASKFGSKIPHQLS-VSKEIS---FTFIQALRDVVSDFHNNRT 224

Query: 221 FPHIKL--SLTGFLDGKFDQSFCALKEEYAKKLFD-----GRKMDSMSRRT--------- 264
            P + L  + +G +  +  Q    L E+  + + D       + D  S            
Sbjct: 225 NPLLTLLKNKSGEIKEEDYQPISDLVEQLNESIEDLPDVQNIRSDIKSTIQDAVGLTYSP 284

Query: 265 ------LIGPHRSD---------LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
                    P+ ++         +     +    I   S G   ++ + + L   +   +
Sbjct: 285 SSLSIKSSVPNEAEKLLQSLKLFIGEPGEEYEGGIHELSLGGANLIFLTLKLLEFKYRKS 344

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
              FA  L+++E  AH+    +  LF  +    +QI  + 
Sbjct: 345 KDTFANFLIIEEPEAHIHNHIQKTLFDKLDYGDTQIIYST 384


>gi|298676002|ref|YP_003727752.1| SMC domain-containing protein [Methanohalobium evestigatum Z-7303]
 gi|298288990|gb|ADI74956.1| SMC domain protein [Methanohalobium evestigatum Z-7303]
          Length = 888

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 26/167 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS---- 60
           +K+K L +   R+Y  L L F+   ++  G NG GK+++LEA      G   R  S    
Sbjct: 1   MKLKRLYVENIRSYEYLDLSFNNGVSVVSGANGSGKSSLLEAFFTGLFGS--RTLSKEYV 58

Query: 61  YADVTRIGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRC---LQINDVVI----- 110
            AD+ R G+    S +  +E  G E + +   + +T++DR+       + N  ++     
Sbjct: 59  LADMIRKGASKA-SIYLELEQNGNEYIIEQGFRYDTKNDRAYNSKSVFKSNGNIVVDQAT 117

Query: 111 RVVDELNKHLRI--------SWL-VPSMDRIFSGLSMERRRFLDRMV 148
           +  D + K L +         ++    +D + +    ER+  +D ++
Sbjct: 118 QTYDAVCKLLNMDEEAYRNCVYIRQGEIDILINATPKERQNMIDDLL 164


>gi|148824111|ref|YP_001288865.1| chromosome partitioning protein smc [Mycobacterium tuberculosis
           F11]
 gi|253797990|ref|YP_003030991.1| chromosome partition protein smc [Mycobacterium tuberculosis KZN
           1435]
 gi|254551995|ref|ZP_05142442.1| chromosome partition protein smc [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289553289|ref|ZP_06442499.1| chromosome partition protein smc [Mycobacterium tuberculosis KZN
           605]
 gi|297635541|ref|ZP_06953321.1| chromosome partition protein SMC [Mycobacterium tuberculosis KZN
           4207]
 gi|297732540|ref|ZP_06961658.1| chromosome partition protein SMC [Mycobacterium tuberculosis KZN
           R506]
 gi|313659872|ref|ZP_07816752.1| chromosome partition protein SMC [Mycobacterium tuberculosis KZN
           V2475]
 gi|148722638|gb|ABR07263.1| chromosome partitioning protein smc [Mycobacterium tuberculosis
           F11]
 gi|253319493|gb|ACT24096.1| chromosome partition protein smc [Mycobacterium tuberculosis KZN
           1435]
 gi|289437921|gb|EFD20414.1| chromosome partition protein smc [Mycobacterium tuberculosis KZN
           605]
 gi|328457764|gb|AEB03187.1| chromosome partition protein smc [Mycobacterium tuberculosis KZN
           4207]
          Length = 1205

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      ++ I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           + +R  + +       +   + +  Q+  LG
Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206


>gi|330503409|ref|YP_004380278.1| hypothetical protein MDS_2495 [Pseudomonas mendocina NK-01]
 gi|328917695|gb|AEB58526.1| hypothetical protein MDS_2495 [Pseudomonas mendocina NK-01]
          Length = 575

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/380 (17%), Positives = 120/380 (31%), Gaps = 66/380 (17%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I+ L IS FR+  +L  V        +G    GK++IL+AI      R  R  ++ D+ 
Sbjct: 3   RIRRLIISNFRSIQALDWVPAPGINCLIGPGDSGKSSILDAIDLCVGAR--RGGTFGDM- 59

Query: 66  RIGSPSFFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                 FF+      +     L D+ + L   D         N     V DE    L   
Sbjct: 60  -----DFFALNVETPITISVTLGDLPVSLMDIDVYGEFLRGFNPGTGEVEDEPRAGLETV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM--RGRNRLLT-----EG 176
                   +  G  +E        +F+     R      ER +  + R  L         
Sbjct: 115 I----TLLLQVGADLEP----TWTLFSE----RAEQQQLERTLPWKERAALAPARIGSFA 162

Query: 177 YFDSSW-----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
             + SW      + +  + AELG ++  A  +      +   E           L+ T  
Sbjct: 163 SSNLSWSRGSVLNRLTDERAELGAELARAARQARANFGNQAAE----------HLTQTLE 212

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +  +  Q          + L D   +        +          + +  I +    TG 
Sbjct: 213 VVQRTAQHLGVSVGAMPQALLDAHSVSIGEGAIAL----------HSETGIPLRSLGTGS 262

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS----QIFM 347
            ++++ G+              API L+DE+   L+  +       +    +    Q+FM
Sbjct: 263 SRLLVAGLQ-------RAAASAAPIALVDEVEYGLEPHRLMRFLDSLGAKDAAAPLQVFM 315

Query: 348 TGTDKSVFDSLNETAKFMRI 367
           T         L+  ++   +
Sbjct: 316 TTHSPVALRELSG-SQLFVV 334


>gi|18313233|ref|NP_559900.1| hypothetical protein PAE2280 [Pyrobaculum aerophilum str. IM2]
 gi|18160751|gb|AAL64082.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
          Length = 794

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 105/312 (33%), Gaps = 65/312 (20%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I+ + +  FR+Y    +V      I  G  G GKT++L A+ +   GR      R A  
Sbjct: 3   RIERIEVENFRSYRGRHIVALGDVNILHGRIGAGKTSLLYAVEYALYGRQLEVKERVAKL 62

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR------VVDE 115
            D+    S         +   + +  I  +L  R    V  + I+ V +R       + E
Sbjct: 63  QDLINTESQE-MGVVLTLRNGDRVLRIERRLGRRSSEKV-VVNIDGVELRGKDAEEKLAE 120

Query: 116 LNK-----HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------------------ 152
           L       + R+ ++       F   + ++R      +F ID                  
Sbjct: 121 LLGADEDVYERLVYISHRTLEGFIYGTSQKRSLTVDRLFGIDVIDGVVRTISGVEKELME 180

Query: 153 --PRHRRRMIDFERL------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198
                R+R+  +E+             ++ R   L     + +     E ++A+   ++ 
Sbjct: 181 KAEELRKRLAAYEKHKDIIRRYGGFGQLKAR---LDSLAGEINALKEREERLAKAAEELA 237

Query: 199 IARVEMINALS---SLIMEYV----------QKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             R   ++ L     L++EY           +      + LS+   L     ++    + 
Sbjct: 238 KKRANYLSKLQEQEPLLLEYYRVRSELQLLEEAGEGSGVDLSIVERLRDALLEAVEEFEH 297

Query: 246 EYAKKLFDGRKM 257
            + ++L +  + 
Sbjct: 298 FFGQELAERLRK 309


>gi|34763238|ref|ZP_00144200.1| EXONUCLEASE SBCC [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
 gi|27887091|gb|EAA24200.1| EXONUCLEASE SBCC [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 921

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 17/170 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62
           + IK + +  +R++++  + F     + +G NG GKT+ILEAIS +      R       
Sbjct: 1   MIIKKVQLENYRSHSNTTIEFTKGINLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQI----NDVVIRVVDELN 117
              + G  S       +       ++  +  +T+  +      I    +  +   ++EL 
Sbjct: 61  SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDMIGSEYDGDIQEKLEELC 120

Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157
              +         +         IF     +R    +++    I      
Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 170


>gi|15842466|ref|NP_337503.1| chromosome segregation SMC protein, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|57117036|ref|NP_217438.2| chromosome partition protein Smc [Mycobacterium tuberculosis H37Rv]
 gi|148662766|ref|YP_001284289.1| putative chromosome segregation SMC protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215404897|ref|ZP_03417078.1| putative chromosome partition protein smc [Mycobacterium
           tuberculosis 02_1987]
 gi|215412764|ref|ZP_03421476.1| putative chromosome partition protein smc [Mycobacterium
           tuberculosis 94_M4241A]
 gi|215431869|ref|ZP_03429788.1| putative chromosome partition protein smc [Mycobacterium
           tuberculosis EAS054]
 gi|254233012|ref|ZP_04926339.1| chromosome partition protein smc [Mycobacterium tuberculosis C]
 gi|260187941|ref|ZP_05765415.1| putative chromosome partition protein [Mycobacterium tuberculosis
           CPHL_A]
 gi|260202057|ref|ZP_05769548.1| putative chromosome partition protein [Mycobacterium tuberculosis
           T46]
 gi|289444477|ref|ZP_06434221.1| chromosome segregation protein SMC [Mycobacterium tuberculosis T46]
 gi|289448587|ref|ZP_06438331.1| chromosome partition protein smc [Mycobacterium tuberculosis
           CPHL_A]
 gi|289746721|ref|ZP_06506099.1| chromosome partition protein smc [Mycobacterium tuberculosis
           02_1987]
 gi|289755035|ref|ZP_06514413.1| chromosome partition protein Smc [Mycobacterium tuberculosis
           EAS054]
 gi|298526391|ref|ZP_07013800.1| SMC protein [Mycobacterium tuberculosis 94_M4241A]
 gi|306777212|ref|ZP_07415549.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu001]
 gi|306785758|ref|ZP_07424080.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu003]
 gi|306789798|ref|ZP_07428120.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu004]
 gi|306794611|ref|ZP_07432913.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu005]
 gi|306798855|ref|ZP_07437157.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu006]
 gi|306804700|ref|ZP_07441368.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu008]
 gi|306808893|ref|ZP_07445561.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu007]
 gi|306968992|ref|ZP_07481653.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu009]
 gi|306973329|ref|ZP_07485990.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu010]
 gi|307081035|ref|ZP_07490205.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu011]
 gi|17380300|sp|Q10970|SMC_MYCTU RecName: Full=Chromosome partition protein smc
 gi|13882771|gb|AAK47317.1| chromosome segregation SMC protein, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|16030075|emb|CAC93884.1| SMC protein [Mycobacterium tuberculosis H37Rv]
 gi|41352765|emb|CAA98982.2| PROBABLE CHROMOSOME PARTITION PROTEIN SMC [Mycobacterium
           tuberculosis H37Rv]
 gi|124602071|gb|EAY61081.1| chromosome partition protein smc [Mycobacterium tuberculosis C]
 gi|148506918|gb|ABQ74727.1| putative chromosome segregation SMC protein [Mycobacterium
           tuberculosis H37Ra]
 gi|289417396|gb|EFD14636.1| chromosome segregation protein SMC [Mycobacterium tuberculosis T46]
 gi|289421545|gb|EFD18746.1| chromosome partition protein smc [Mycobacterium tuberculosis
           CPHL_A]
 gi|289687249|gb|EFD54737.1| chromosome partition protein smc [Mycobacterium tuberculosis
           02_1987]
 gi|289695622|gb|EFD63051.1| chromosome partition protein Smc [Mycobacterium tuberculosis
           EAS054]
 gi|298496185|gb|EFI31479.1| SMC protein [Mycobacterium tuberculosis 94_M4241A]
 gi|308214421|gb|EFO73820.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu001]
 gi|308329538|gb|EFP18389.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu003]
 gi|308333731|gb|EFP22582.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu004]
 gi|308337088|gb|EFP25939.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu005]
 gi|308340900|gb|EFP29751.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu006]
 gi|308344737|gb|EFP33588.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu007]
 gi|308348717|gb|EFP37568.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu008]
 gi|308353413|gb|EFP42264.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu009]
 gi|308357232|gb|EFP46083.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu010]
 gi|308361241|gb|EFP50092.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu011]
 gi|323718533|gb|EGB27704.1| chromosome partition protein smc [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904536|gb|EGE51469.1| chromosome partition protein smc [Mycobacterium tuberculosis W-148]
          Length = 1205

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      ++ I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           + +R  + +       +   + +  Q+  LG
Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206


>gi|392776|gb|AAC43047.1| RecF protein [Caulobacter crescentus CB15]
          Length = 67

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 4  RIK---IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          R+    +  L +++FR+Y   RL    +     G NG GKTN+LEAIS LSPG+
Sbjct: 11 RMASAELLSLTLADFRSYERARLETGGRSVYLFGANGAGKTNLLEAISLLSPGK 64


>gi|170289870|ref|YP_001736686.1| SMC domain-containing protein [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170173950|gb|ACB07003.1| SMC domain protein [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 758

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 8/107 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           + I+ L +  F+++    +V         G NG GK+NIL+AI+FL   R    R +   
Sbjct: 1   MMIEELQLINFKSFKRATIVIPKGLIAITGPNGSGKSNILDAIAFLMGWRAKRLRASRLE 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV 108
            + R G+P        V   E      IK++ R   + +   ++ND 
Sbjct: 61  HLVRRGAPWAQVNLTIVNSGER-----IKIQRRVKPNGKSSYRVNDK 102


>gi|66358594|ref|XP_626475.1| SMC1 structural maintenance of chromosomes 1 [Cryptosporidium
           parvum Iowa II]
 gi|46227810|gb|EAK88730.1| SMC1 structural maintenance of chromosomes 1 [Cryptosporidium
           parvum Iowa II]
          Length = 1349

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 91/259 (35%), Gaps = 27/259 (10%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           IK L I  F++Y    +   F    T  VG NG GK+N+++A+SF         R  +  
Sbjct: 31  IKKLIIENFKSYNGRHIIGPFSEGLTCIVGPNGSGKSNLMDALSFALGLSSNDMRSTNLK 90

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D+                G   ++  +  +      S   L  N  V  V     ++ + 
Sbjct: 91  DLIYRPEQEG--------GPVDISQPNNTVGLSQKGSQSNLSNNAEVSLVFTLQFENNQE 142

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG------ 176
                   RI S  +   R  +D+ V + +  +  ++ D+  L++ RN L+ +G      
Sbjct: 143 IVFS---RRILSSGAS--RYLIDKNVVSQE-TYINKLADYNILVKARNFLVFQGDVEDVA 196

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                  + +  Q++    ++      + N     + + V   +F   KL      + + 
Sbjct: 197 QRAPKELTKLFEQISG-SDELIEEYDRLSNE--QSLNQIVSHNSFNRRKLLEAERRELQK 253

Query: 237 DQSFCALKEEYAKKLFDGR 255
                   E   ++  + R
Sbjct: 254 QIEEVNEYERLEEQKANNR 272


>gi|308276701|gb|ADO26600.1| Chromosome partition ATPases protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 1160

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 72/187 (38%), Gaps = 21/187 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLRGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I  +  +   R  R      +IN    R
Sbjct: 61  MEDVIFAGAGERKPLGRAEVTLTIDNSDGALPIEYREVSVTRRMFRDGASEYEINGSRAR 120

Query: 112 VVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      + +I      +RR F++     +  R R+     +
Sbjct: 121 LMDIQELLSDSSIGREMHVIVGQGRLAQILESRPEDRRAFIEEAAGVLKHRRRKEKAQRK 180

Query: 164 RLMRGRN 170
            +    N
Sbjct: 181 LVGMQAN 187


>gi|15789741|ref|NP_279565.1| chromosome segregation protein [Halobacterium sp. NRC-1]
 gi|169235456|ref|YP_001688656.1| chromosome segregation protein [Halobacterium salinarum R1]
 gi|49036459|sp|Q9HRW3|RAD50_HALSA RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|10580117|gb|AAG19045.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
 gi|167726522|emb|CAP13307.1| DNA double-strand break repair ATPase [Halobacterium salinarum R1]
          Length = 883

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 78/212 (36%), Gaps = 29/212 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++   L++S F+ YA   +  D   T+  G NG GK+++L+A  F   G      + AD 
Sbjct: 1   MRFTRLSLSNFKCYADAAVSLDPGVTVIHGLNGSGKSSLLDACFFALYGTTALDTTLADA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD-------ELN 117
             IG+ +        E   G   +  ++     R+     + +     +D        ++
Sbjct: 61  VTIGAETA-EIDLHFEHAGGDYHVHRRIRASGGRAQTAACVLETPTDRIDGVTDVEAHIS 119

Query: 118 KHLRISWLVP---------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             LR+               ++++ +     R+  +D ++         ++ ++    R 
Sbjct: 120 GLLRMDAEAFVNCAYVRQGEVNKLINAAPSTRQDMIDALLQ------LGKLEEY----RQ 169

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
           R      G  D    S++E Q+  L  +I   
Sbjct: 170 RAGDARLGVEDVK--SNVEGQLDRLADQIADK 199


>gi|163800493|ref|ZP_02194394.1| hypothetical protein 1103602000595_AND4_07419 [Vibrio sp. AND4]
 gi|159175936|gb|EDP60730.1| hypothetical protein AND4_07419 [Vibrio sp. AND4]
          Length = 553

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/379 (15%), Positives = 122/379 (32%), Gaps = 68/379 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS----PGRGF 56
           M N + I+ L I  F+   S    F+ +  I VGDN  GKT ILEA+  +S     G+  
Sbjct: 1   MGNLMYIEKLTIKNFKKIESGEYEFNEKVNILVGDNDSGKTTILEALELVSSSNYRGKSI 60

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVVDE 115
             +    +    + +       +EG      +  I +E        C +          E
Sbjct: 61  NSSLSPQL--FNNKA---VRTYLEGDLSKGSLPEILIEAYLSG---CPEYRGKNNSQNKE 112

Query: 116 LNKHLRISWLVPSMDRIFSG------LSMERRRF--LDRMVFAIDPRHRRRMIDFERLMR 167
                        +   +        +      F  ++   F+ +P   + +    + + 
Sbjct: 113 YEGVFIKICFDEDLTSTYEEFCKSAKVESIPTEFYKVEWFSFSWEP--IKFLSRKVKGLF 170

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN----ALSSLIMEYVQKENFPH 223
                L   Y  + + S+I      +   +   +  +++     L +   E  Q ++   
Sbjct: 171 IDPTRLHPTYGKTQYLSNI------INSSLTKEQQALLHLNYRQLKNSFEEQQQIQD--- 221

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH--RSDLIVDYCDKA 281
                   L+   D      ++            D+ S     G      ++  ++  K 
Sbjct: 222 --------LNNDLDSENQVTEQNL------SIIADTNSGTVEAGLQLAVDEVSFNHIGKG 267

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD- 340
                    + K   + + LA    + N  G    + ++E   HL     + L + +++ 
Sbjct: 268 E--------QNK---IQVKLA----LLNKGGNVNFVTVEEPENHLSHTNLSRLVKFISEN 312

Query: 341 IGSQIFMTGTDKSVFDSLN 359
             +QIF+T     V + L+
Sbjct: 313 TNNQIFITTHSSYVLNKLS 331


>gi|300858753|ref|YP_003783736.1| chromosome partition protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686207|gb|ADK29129.1| chromosome partition protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206459|gb|ADL10801.1| Chromosome partition protein [Corynebacterium pseudotuberculosis
           C231]
 gi|302331014|gb|ADL21208.1| Chromosome partition protein [Corynebacterium pseudotuberculosis
           1002]
          Length = 1160

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/187 (18%), Positives = 72/187 (38%), Gaps = 21/187 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLRGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I  +  +   R  R      +IN    R
Sbjct: 61  MEDVIFAGAGERKPLGRAEVTLTIDNSDGALPIEYREVSVTRRMFRDGASEYEINGSRAR 120

Query: 112 VVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      + +I      +RR F++     +  R R+     +
Sbjct: 121 LMDIQELLSDSSIGREMHVIVGQGRLAQILESRPEDRRAFIEEAAGVLKHRRRKEKAQRK 180

Query: 164 RLMRGRN 170
            +    N
Sbjct: 181 LVGMQAN 187


>gi|303244939|ref|ZP_07331264.1| SMC domain protein [Methanothermococcus okinawensis IH1]
 gi|302484704|gb|EFL47643.1| SMC domain protein [Methanothermococcus okinawensis IH1]
          Length = 347

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 102/336 (30%), Gaps = 72/336 (21%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           + +  +++  F+++ + +L   +  T  +G NG GK+NI++ I F+   +  +  R   +
Sbjct: 2   VHLSEIHLKNFKSFKNAKLKIPSGFTAILGPNGSGKSNIIDGICFVLGKTSAKSLRAGKF 61

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-------------- 107
            ++         + +A V       D  I +++      R +++                
Sbjct: 62  NELITYHKNKR-ADYAEVILFFDNKDRKIPIDSDKIGISRKVKLKGDNNYYMIWYEKKEK 120

Query: 108 --------VVIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLDRMVFA 150
                          ++        L            + R+      ERR+ +D +   
Sbjct: 121 ENEKGIEKRKKMKKSQIIDIFNRISLSGEGLNIILQGDLIRLIEMSPKERRKLIDEICGI 180

Query: 151 IDPRHRRRMIDFE-------------RLMRGRNRL--LTEGYFDSSWCSSIEAQMAELGV 195
            +   ++     E             R+   R  L  L +   D+     +  ++     
Sbjct: 181 SEYDEKKEKSQRELEKAREYIEKIDIRINEVRANLEKLKKEKNDAEQYLKLNEELKTTKY 240

Query: 196 KINIARVEM--------------INALSSLIMEYVQKENFPHIKL--SLTGFLDGKFDQS 239
            +   +VE+              +  L       +   N   I L   L   ++   ++ 
Sbjct: 241 ILTSKKVELLKVVMEDTEKNINALKELKEKFQSNIYNINDEIINLKNKLENIINELNEKG 300

Query: 240 FCALKEEYA--KKLFDGRKMDSMSRRTLIGPHRSDL 273
              + E +   K+L    + D       +     DL
Sbjct: 301 NEEVMELHKSIKELELNIENDKKQ----LNHSLDDL 332


>gi|67609449|ref|XP_666991.1| Xenopus 14s cohesin smc1 subunit [Cryptosporidium hominis TU502]
 gi|54658074|gb|EAL36760.1| Xenopus 14s cohesin smc1 subunit [Cryptosporidium hominis]
          Length = 1349

 Score = 68.4 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/259 (17%), Positives = 93/259 (35%), Gaps = 27/259 (10%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           IK L I  F++Y    +   F    T  VG NG GK+N+++A+SF         R  +  
Sbjct: 31  IKKLIIENFKSYNGRHIIGPFSEGLTCIVGPNGSGKSNLMDALSFALGLSSNDMRSTNLK 90

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D+                     ++ ++ L  +  +S   L  N  V  V     ++ + 
Sbjct: 91  DLIYRPEQEGGPV------DISQSNNTVGLSQKGSQSN--LSNNAEVSLVFTLQFENNQE 142

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG------ 176
                   RI S  +   R  +D+ V + +  +  ++ D+  L++ RN L+ +G      
Sbjct: 143 IIFS---RRILSSGAS--RYLIDKNVVSQE-TYINKLADYNILVKARNFLVFQGDVEDVA 196

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                  + +  Q++    ++      + N     + + V   +F   KL      + + 
Sbjct: 197 QRAPKELTKLFEQISG-SDELIEEYDRLSNE--QSLNQIVSHNSFNRRKLLEAERRELQK 253

Query: 237 DQSFCALKEEYAKKLFDGR 255
                   E   ++  + R
Sbjct: 254 QIEEVNEYERLEEQKANNR 272


>gi|297617463|ref|YP_003702622.1| chromosome segregation protein SMC [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145300|gb|ADI02057.1| chromosome segregation protein SMC [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 1193

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 98/296 (33%), Gaps = 36/296 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++     + F     + VG NG GK+NI++AI +    S  R  R   
Sbjct: 1   MYLKRLELKGFKSFAERTEIEFMPGVNVIVGPNGCGKSNIVDAIRWALGESNVRHLRGQR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+              ++  + +  +    + +  +  RS      IN V  R
Sbjct: 61  NDDVIFSGTDKRRPLGLAQVDVAIDNCDRVLPLDFAEVSVTRKVHRSGESEFYINRVPAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +++I +    +RR  L+             +I + 
Sbjct: 121 LKDVQDLFAGTGLGKKGYSIIGQGELEQILNLKPFDRRLLLEE---------ASGLIKYR 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             M      L     D        S +E ++  L  K + +R      L+  +    Q  
Sbjct: 172 HRMEEAETKLAVIKEDMARVEKMLSDLEGRLEVLAEKASKSRRY--RELAGELRNLEQNL 229

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
               I+       D   ++     +   A+ L   ++ +    +   G  + +L  
Sbjct: 230 LASAIERLYRELQDYLGERDKVKAELAKARTLIQEKEQELALLKAKTGEVKENLSF 285


>gi|322387563|ref|ZP_08061172.1| SMC structural maintenance of chromosomes partitioning protein
           [Streptococcus infantis ATCC 700779]
 gi|321141430|gb|EFX36926.1| SMC structural maintenance of chromosomes partitioning protein
           [Streptococcus infantis ATCC 700779]
          Length = 1179

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/279 (20%), Positives = 106/279 (37%), Gaps = 31/279 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   IK+E    R+     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNQDGFIKDAGQEIKVERHIYRTGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKINI--ARVE-MINALSSLIMEYV 216
             ++     L       Y   +    +E Q A     I +   R    ++ L + I    
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQAATARKFIELDGQRKAIYLDVLVAQIQANK 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
            + +    +L+    L   + Q    L+EE  + L   R
Sbjct: 239 AELDLTEEELNQVQELLTNYYQKRQELEEE-NQSLKKKR 276


>gi|332981632|ref|YP_004463073.1| chromosome segregation protein SMC [Mahella australiensis 50-1 BON]
 gi|332699310|gb|AEE96251.1| chromosome segregation protein SMC [Mahella australiensis 50-1 BON]
          Length = 1188

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 113/298 (37%), Gaps = 32/298 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K + I  F+++A  + +      T  VG NG GK+NI +AI ++   +     R + 
Sbjct: 1   MYLKRIEIYGFKSFADKIDIDLLPGITAIVGPNGSGKSNIADAIRWVLGEQSPKVLRGSR 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNK 118
             D+   G+ S      A V  +   +D ++ ++  + + + R  +  +    +   L +
Sbjct: 61  MEDIIFSGADSRKPVGMAEVSMILDNSDRALDMDYSEIKVTRRMFKSGESEYYLNKTLCR 120

Query: 119 HLRISWLVPS---------------MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
              I  L                  +D++ S    ERR   +     +   ++ R ID E
Sbjct: 121 LKDIQQLFMDTGVGKEGYSIIGQGRIDQLLSDRPQERRGIFEEAAGIVK--YKSRKIDAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +      +          S +E Q+  L  +   AR   I  L    ++Y+    F +
Sbjct: 179 KKLEQ---TIQNLQRVEDILSELELQLGPLEQESRKAR-HYIQLLDK--LKYIDINLFLY 232

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD--SMSRRTLIGPHRSDLIVDYCD 279
               L   +  + +Q    +KE   +K    +  +     ++ L+G ++  +   + D
Sbjct: 233 NYHRLKEQI-ARTEQESADIKETLRQKEQSKQADEAALAQQKALLGVYKDKIEALHAD 289


>gi|205372121|ref|ZP_03224937.1| ATP-dependent OLD family endonuclease [Bacillus coahuilensis m4-4]
          Length = 479

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 59/375 (15%), Positives = 112/375 (29%), Gaps = 66/375 (17%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +IK L I  FR+Y S  +       + +G N VGKT +L+AI   +  RG R  S     
Sbjct: 4   RIKELRIRNFRSYKSADIDLSDNC-VLIGANNVGKTTLLQAIQV-AFVRGTRVGSDDIYI 61

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             G        A ++ +    D     E  +          D+      +L +   +  +
Sbjct: 62  NNGESLPKDRKAIIDLLIVPTD-EQNNEVMEFEDKWFEHFGDLRSENPTDLGQFFAMRTV 120

Query: 126 VPSMDRIFSG---------------------LSMERRRFLDRMVFAIDPRHRRRMIDFER 164
           +     I  G                         R R  DR++ +I   +     D   
Sbjct: 121 IAFD--IVKGEYQVEKKALIEWPKTEEVESYSKYNRNRITDRVLQSIPIFYMDAKRDIAS 178

Query: 165 LMRGR----NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
            M+ R     +L+ +   D      IE  + E+   I   R  ++N L+  + +  +  N
Sbjct: 179 EMKDRYSYWGKLVKDVGLDEGEIEKIEGVLDEINDTIIE-RSSVLNHLTKYLSKISKTVN 237

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
                + +                          +  D      +    +        + 
Sbjct: 238 TKEESIKINPV---------------------SRKIRDLNRGIDITFKDQDSESFPISNH 276

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLIS------NTTGFAPILLLDEISAHLDEDKRNAL 334
            +          +  +  + L                 + P++LL+E  AHL    +  +
Sbjct: 277 GMGT--------RSWITFLTLVAYIAWKNKQMKDEEIPYHPLILLEEPEAHLHPQAQRKI 328

Query: 335 FRIVTDIGSQIFMTG 349
           F  +  I  Q  ++ 
Sbjct: 329 FNQINGIAGQKIVST 343


>gi|66043686|ref|YP_233527.1| hypothetical protein Psyr_0419 [Pseudomonas syringae pv. syringae
          B728a]
 gi|63254393|gb|AAY35489.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
          B728a]
          Length = 421

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-----FLSPGRGFRRA 59
          +++  L++  FR Y      F     + VG NG GKT++L  ++      L      R +
Sbjct: 1  MRLDRLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGVAGCFGNLLGSIGVHRPS 60

Query: 60 SYADVTRIG 68
                R  
Sbjct: 61 IAESDVRFE 69


>gi|289759044|ref|ZP_06518422.1| chromosome partition protein Smc [Mycobacterium tuberculosis T85]
 gi|289714608|gb|EFD78620.1| chromosome partition protein Smc [Mycobacterium tuberculosis T85]
          Length = 914

 Score = 68.0 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      ++ I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           + +R  + +       +   + +  Q+  LG
Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206


>gi|307706717|ref|ZP_07643522.1| chromosome segregation protein SMC [Streptococcus mitis SK321]
 gi|307617802|gb|EFN96964.1| chromosome segregation protein SMC [Streptococcus mitis SK321]
          Length = 1179

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 109/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             + +    +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELDSTEEELTQVQELLTSYYQKREKLEEE-NQALKKQRQ 277


>gi|307595308|ref|YP_003901625.1| SMC domain-containing protein [Vulcanisaeta distributa DSM 14429]
 gi|307550509|gb|ADN50574.1| SMC domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 826

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 97/277 (35%), Gaps = 29/277 (10%)

Query: 1   MTNRIKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--- 56
           M  +++I  L I +FR +    R+VF+    I  G  G GKT+I++AI +   G      
Sbjct: 1   MRVKVRISELTIRDFRGFRGEHRVVFNDGINIIHGPVGSGKTSIVQAIEYALYGTQLEVK 60

Query: 57  -RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            R +  AD+    S S         G+E + ++    ET  +       IN    +  D 
Sbjct: 61  ERVSKLADLINEDSNSSLVKLVLTNGVEIVRELKRSGETARESP--IAMINGTRYKGDDV 118

Query: 116 LNKHLRISWLVPSMDR------------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
             K +    +                  +  G   +R  F+D++           + +  
Sbjct: 119 NPKIIEFLGVDDDDFERFVLVTHRTLEALVYGSITKRSIFIDKLFG------LEILDNLN 172

Query: 164 RLM--RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + +       L+       +    +   + + G  I  AR + +  L   I +  ++E  
Sbjct: 173 KSLPMSQLEELINRLRQRLASVKELPEIIVKYGS-IEKAREK-VRELREEIDKLRKEEEE 230

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
                +       +  ++F  ++E Y+  +    + +
Sbjct: 231 LSNTYNDLLKRREEILKNFKGVEEVYSNYIAIRIRRE 267


>gi|325282892|ref|YP_004255433.1| SMC domain-containing protein [Deinococcus proteolyticus MRP]
 gi|324314701|gb|ADY25816.1| SMC domain protein [Deinococcus proteolyticus MRP]
          Length = 1101

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 96/263 (36%), Gaps = 31/263 (11%)

Query: 7   IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRASYA 62
           I  L +  F++++    + F+   T  +G NG GK+N++EA+ +++ G   R  R     
Sbjct: 2   IDSLTLHGFKSFSQRTHIEFEPGITAVIGPNGSGKSNVVEALRWVTHGARARELRAGRAT 61

Query: 63  DVTRIGSPSFFST---FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           ++   G           A V+     A  ++ L  R  R     Q        V +++  
Sbjct: 62  ELIFHGGSGAGRAPLGLAEVQAELRHAGSAVHLSRRIYRDGTSEQELGGRSVRVRDIHAA 121

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           LR + L P    +               V  +      +++ + +   G +R +      
Sbjct: 122 LRGTGLGPGGLAVIGQG----------EVSGVVQAEGSKLLGYLQEAAGLSRSVAAREET 171

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
           ++  +  E  +A+LG+ +   R   +  L       ++             + +    Q+
Sbjct: 172 AALLAEAERHLADLGL-VQAERQSGLERLRRAAEAALR-------------WRELSARQA 217

Query: 240 FCALKEEYAKKLFDGRKMDSMSR 262
                +E  K+L   R++D+  +
Sbjct: 218 LLDAAQEREKQLALRRELDAARQ 240


>gi|289423975|ref|ZP_06425767.1| chromosome segregation protein SMC [Peptostreptococcus anaerobius
           653-L]
 gi|289155611|gb|EFD04284.1| chromosome segregation protein SMC [Peptostreptococcus anaerobius
           653-L]
          Length = 1182

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 105/312 (33%), Gaps = 45/312 (14%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++     + FD   T  VG NG GK+NI +A+   L     +  R   
Sbjct: 1   MYLKKLELKGFKSFPMKTDIFFDKGVTAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGEK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV   G+ S     +      ++   G  DI     +              IN    R
Sbjct: 61  MEDVIFSGTDSKKAMNYCEVAITLDNSNGEIDIDSNELVIKRKAYRTGESNFYINGKSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          ++ I S     RR+  D         +R +  + E
Sbjct: 121 LKDIREILMDTGIGKDGYSIIEQGKVEDILSNNPANRRKIFDEACGIAK--YRYKKNEAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL------GVKINIARVE--------MINA-- 207
           R ++  +  L            ++ Q+  L        K  + R E         IN   
Sbjct: 179 RNLKKSSENLERIN---DIFEEVDKQLKPLERQQVKAKKYIVLRDELKILEINDFINKNK 235

Query: 208 -LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY--AKKLFDGRKMDSMSRRT 264
            L   I +Y  K      ++ + G      ++   +L +E    + L D    D++  +T
Sbjct: 236 GLEEEISQYTAKIQEISKEMEILGQEKFDLEEDLVSLSKEIDELEILLDKMGEDNIDMKT 295

Query: 265 LIGPHRSDLIVD 276
            I   +S++ V 
Sbjct: 296 KISYKKSEIQVS 307


>gi|304380426|ref|ZP_07363105.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|304341033|gb|EFM06954.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
          Length = 729

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 139/418 (33%), Gaps = 74/418 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           + I  L I  FRNY S    FD +    +G+N  GKTN L A+  L   S     +    
Sbjct: 1   MFISTLQIRNFRNYESEIFRFDNETNTIIGENDSGKTNALTALRILLDDSYYYSSKTLKE 60

Query: 62  ADV---TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           +D     + G    +    A  EG        I  E  D+     + +N     +++EL 
Sbjct: 61  SDFFHGIQNGWQGHWIIISATFEG--------ISEEEFDNEICASISLNSESQTILEELI 112

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR-----RMIDFERLMRGRNRL 172
            +      V S+          R++  D        +        R+ D+E     ++ L
Sbjct: 113 SNADKG--VGSISLFIRPNKAIRKQLFDISTELDSHQFNEFRNSIRLSDYEFYYTSKSNL 170

Query: 173 ----------LTEGYFDSSWCSSIEAQMAELGVKINIA------RVEMINALSSLIMEYV 216
                     L     D+   +  E   A LG +I+++       V  ++AL  ++ E  
Sbjct: 171 NFCINENYDKLVGRLNDNIASNPEEDDEALLGSRIDMSDIFKHISVVYVDALRDVLREMK 230

Query: 217 -QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-----------GRKMDSMSRRT 264
             +     I  ++   +     +S   + ++  + +              R+++S+   +
Sbjct: 231 NNRNPVKRIMETIESKISSDNVESLKTIIQQLNETITSVPEIRKIGENINRQLNSIIG-S 289

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQK----------------VVLVGIFLAHARLIS 308
           +  P+         D        S    K                ++ + + +       
Sbjct: 290 VYSPNLLLSSTMSDDMGFLAKFLS---MKPEQNIDLDLLGLGHLNMIYLALKIVEFEA-C 345

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRI--VTDIGSQIFMTGTDKSVFDSLNETAKF 364
            +     I+L++E  AH+    +  LF    +    +QI MT T       ++E ++ 
Sbjct: 346 RSRELLNIMLIEEPEAHIHHHIQKTLFEGLNLQKNYTQILMT-THSVHLAEVSEISRM 402


>gi|48477928|ref|YP_023634.1| chromosome partition protein smc [Picrophilus torridus DSM 9790]
 gi|48430576|gb|AAT43441.1| chromosome partition protein smc [Picrophilus torridus DSM 9790]
          Length = 1150

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 15/156 (9%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA---S 60
           + I+ + I  F++Y    ++ F    T+ +G NG GK+NI +AI F+   R  +      
Sbjct: 1   MFIESIEIDNFKSYGKKTKIYFKPGFTVIIGPNGSGKSNIGDAILFVLGIRSNKTVRIER 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            +D+      S     +        G        IK E  + +S   +  N      V  
Sbjct: 61  LSDLIHKSEKSSRNYCYVELNINDNGNLYSIKREIKKENGEYKSNYYINNNKSKYNDVSN 120

Query: 116 LNKHLRISW------LVPSMDRIFSGLSMERRRFLD 145
           L     I        L   ++ I +    E+R+  +
Sbjct: 121 LIDSFHIYLDSYSFVLQGDINNIITMSGSEKRKLFE 156


>gi|330872072|gb|EGH06221.1| hypothetical protein Pgy4_00810 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 438

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
            +++  L++  FR Y      F     + VG NG GKT++L  +
Sbjct: 16 TDMRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGV 60


>gi|154151724|ref|YP_001405342.1| chromosome segregation protein SMC [Candidatus Methanoregula boonei
           6A8]
 gi|154000276|gb|ABS56699.1| chromosome segregation protein SMC [Methanoregula boonei 6A8]
          Length = 1146

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/279 (17%), Positives = 90/279 (32%), Gaps = 37/279 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + I  L I  F+++    ++ F    T+  G NG GK+NI+++I F   LS  R  R   
Sbjct: 1   MHITELEIDNFKSFSKKTKIPFLEGFTVISGPNGSGKSNIIDSILFVLALSSSRNLRAEK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+  + S    +  A            IK   R           +  +    ++  HL
Sbjct: 61  LTDLINLNSGKNIAEVAIAFSDGTKIRRRIK---RTGNGYYSYNYLNDRLCKQSDIVDHL 117

Query: 121 RISWLVP---------SMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRG- 168
               ++P          + RI      ERR+ +D    V   D + ++ + + + +    
Sbjct: 118 SKFGIIPHGYNVVMQGDVTRIMEMSDFERRKIIDEIAGVSEFDTKKQQALSELDVVRERI 177

Query: 169 ------------RNRLLTEGYFDSSWCSSIEAQMA-----ELGVKINIARVEMINALSSL 211
                       R   L +    +      + ++A         +I+    E    LSS 
Sbjct: 178 EREELLLIELTKRAHELKKEREHALEYQKWQKELAFFQGCRSAAQIHDKEKERATLLSS- 236

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             E   + +      S+              + E   +K
Sbjct: 237 AEEQKIRISRLEADRSIEENELAYLKADLADVDELINQK 275


>gi|257466901|ref|ZP_05631212.1| exonuclease SBCC [Fusobacterium gonidiaformans ATCC 25563]
 gi|315918048|ref|ZP_07914288.1| exonuclease SbcC [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691923|gb|EFS28758.1| exonuclease SbcC [Fusobacterium gonidiaformans ATCC 25563]
          Length = 921

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 96/284 (33%), Gaps = 34/284 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
           ++IK + ++ +R+++ + + F     + +G NG GKT+ILEAI         R       
Sbjct: 1   MQIKKVVLNNYRSHSHIEVAFSKGINLILGKNGRGKTSILEAIGLALFHMTDRTGKTKGK 60

Query: 64  -VTRIGSP--SFFSTFARVEGMEG---------------LADISIKLETRDDRSVRCLQI 105
              + G    S F  F   +G E                L D+  + E RD+   +  ++
Sbjct: 61  TFMKYGEKESSIFIEFLGNDGREYSIFHHYFLKKPKVSILKDMQTEEEYRDNIEEKLEEL 120

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFE 163
             V     D       I         IF      R R  +++      +          E
Sbjct: 121 CGVKAEYRDIY--ENVIVAKQNDFINIFKETPENRARVFNKIFNTEIYNKLFIDLKGFVE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMA---------ELGVKINIARVEMINALSSLIME 214
           + ++ +  L  E         + E +M          +L      AR+E    ++  I +
Sbjct: 179 QYLKEKEMLEVEENTLRLTLENKEERMEMLQQTEEKWKLYALKKEARLEEKQKIAKKIEQ 238

Query: 215 Y-VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           Y   K  F  IK   + F + K  Q+   L+E         +  
Sbjct: 239 YEFIKREFETIKSKFS-FQEQKIRQNKKELQERLVLAKKAKKAR 281


>gi|330964723|gb|EGH64983.1| hypothetical protein PSYAC_08737 [Pseudomonas syringae pv.
          actinidiae str. M302091]
          Length = 117

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +++  L++  FR Y      F     + VG NG GKT++L  +
Sbjct: 1  MRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGV 43


>gi|307708795|ref|ZP_07645257.1| chromosome partition protein smc [Streptococcus mitis NCTC 12261]
 gi|307615161|gb|EFN94372.1| chromosome partition protein smc [Streptococcus mitis NCTC 12261]
          Length = 1179

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 106/271 (39%), Gaps = 32/271 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L++ I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLAAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
             + +    +L+    L   + Q    L+EE
Sbjct: 238 KAELDLTEEELAQVQELLTSYYQKREKLEEE 268


>gi|257388937|ref|YP_003178710.1| chromosome segregation protein [Halomicrobium mukohataei DSM 12286]
 gi|257171244|gb|ACV49003.1| SMC domain protein [Halomicrobium mukohataei DSM 12286]
          Length = 891

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 96/288 (33%), Gaps = 35/288 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  + +  F+ Y    L  D   TI  G NG GK+++LEA  F   G      +  ++
Sbjct: 1   MRISRVRMENFKCYGEADLRLDRGVTIIHGLNGSGKSSLLEACFFALYGTKALDENLDEI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI----------NDVVIRVVD 114
             IG+           G  G   I  ++    +R+     +             V R V 
Sbjct: 61  VSIGADDATVELWFSHGG-GDFHIERRVRATGERATTAKCVLETPEGSFDGARAVRRRVT 119

Query: 115 ELNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE-RLMR 167
           EL +    +++  +  R      + +    +R+  LD ++         ++ ++  R   
Sbjct: 120 ELLRMDSEAFVNCAYVRQGEVNKLINASPSQRQDMLDDLLQ------LGKLEEYRERASD 173

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAE-----LGVKINIARVEM------INALSSLIMEYV 216
            R  +             +E Q+AE     L  ++N  R ++      I  +       V
Sbjct: 174 ARVGIGRVRDDKQGALGQLEEQIAEKEERDLYDRLNELRSQIAQTSEEIERIEGQRERAV 233

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
           +  +     +        + D+    + E         R+ D +  R 
Sbjct: 234 ETRDDAQSIIDDHEERQAELDELEAEIDELRETIAETERERDEIDERI 281


>gi|221194733|ref|ZP_03567790.1| chromosome segregation protein SMC [Atopobium rimae ATCC 49626]
 gi|221185637|gb|EEE18027.1| chromosome segregation protein SMC [Atopobium rimae ATCC 49626]
          Length = 1182

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 116/303 (38%), Gaps = 41/303 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L +  F+++A    +VFD   T+ VG NG GK+N+ +AI ++   +     R  +
Sbjct: 1   MYLKALTLKGFKSFADKTHMVFDPGLTVVVGPNGSGKSNVSDAILWVLGEQSAKMLRGQA 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   GS +      A V  +   AD ++ ++  +    R +         IN    R
Sbjct: 61  MEDVIFSGSSARGAVGVAEVTLVLDNADHTLPIDFSEIEITRRMYRSGESEYLINGAPSR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD----------------RM 147
           ++D         L K          +D I S    +RR  ++                R 
Sbjct: 121 LMDIQDILHDSGLGKDTHSIISQGKLDSILSSRPEQRRELIEEAADISKHRRRKERAERK 180

Query: 148 VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           + A+D    R  +    + R   + L +    +S   +++ Q++EL V++    V+ +  
Sbjct: 181 IGAMDENLARAKVVAREIHRQ-LKPLEKQVDKASRAKTLQKQLSELTVQLA---VDDLRQ 236

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     + ++K+N  +  + L  +   +  +    L+    +K      +    RR    
Sbjct: 237 LQRNHAKLIEKQNETNAAIELAQYRSDEKAKELEKLQALLEQKGLFVGDLGEQRRRMQDV 296

Query: 268 PHR 270
             R
Sbjct: 297 LGR 299


>gi|329666209|pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
           Clamp In Dna Double-Strand Break Repair
 gi|329666210|pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
           Clamp In Dna Double-Strand Break Repair
          Length = 365

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/387 (13%), Positives = 135/387 (34%), Gaps = 57/387 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ + L +  F    ++ + F +  T+  G NG GK+++ EAISF   G G R  +  D 
Sbjct: 1   MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDY 60

Query: 65  TRIGS-PSFFSTFARVEGMEGLADISIK---LETRDDRSVRCLQINDVVIRVVD------ 114
               +         + E      +I  +   L+ + +  +  +  N     +        
Sbjct: 61  VNRNAVDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVK 120

Query: 115 ---------ELNKHLRISWLV-PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                    E    +R  +L    +D++      E    +  +  + +   +   +  E+
Sbjct: 121 QEVEKILGIEHRTFIRTVFLPQGEIDKLLISPPSEITEIISDVFQSKETLEKLEKLLKEK 180

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           + +  N +            S+E ++ E+  + N      ++ L   + +          
Sbjct: 181 MKKLENEI--SSGGAGGAGGSLEKKLKEMSDEYNN-----LDLLRKYLFD---------- 223

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR---KMDSMSRRTLIGPHRSDLIVDYCDKA 281
           K + + +  G+  ++     + Y   L +GR     D               I+      
Sbjct: 224 KSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGG---------FIIKDWGIE 274

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
                 S GE+ ++ + + ++ A +    +G      +DE  + LD + +  +  ++ ++
Sbjct: 275 RPARGLSGGERALISISLAMSLAEV---ASGRLDAFFIDEGFSSLDTENKEKIASVLKEL 331

Query: 342 ----GSQIFMTGTDKSVFDSLNETAKF 364
                  +F+T  D+   ++ +   + 
Sbjct: 332 ERLNKVIVFITH-DREFSEAFDRKLRI 357


>gi|15923404|ref|NP_370938.1| hypothetical protein SAV0414 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156978742|ref|YP_001441001.1| hypothetical protein SAHV_0411 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|221141394|ref|ZP_03565887.1| hypothetical protein SauraJ_07108 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|255005211|ref|ZP_05143812.2| hypothetical protein SauraM_02050 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257878680|ref|ZP_05658333.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|282926722|ref|ZP_06334350.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|294615440|ref|ZP_06695312.1| hypothetical protein EfmE1636_1537 [Enterococcus faecium E1636]
 gi|14246182|dbj|BAB56576.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|156720877|dbj|BAF77294.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257812908|gb|EEV41666.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|269939992|emb|CBI48367.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282592149|gb|EFB97171.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|291591722|gb|EFF23359.1| hypothetical protein EfmE1636_1537 [Enterococcus faecium E1636]
 gi|302750304|gb|ADL64481.1| recombinational DNA repair ATPase, RecF_1 [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|315036418|gb|EFT48350.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
 gi|323465473|gb|ADX77626.1| conserved hypothetical protein [Staphylococcus pseudintermedius
           ED99]
 gi|329313131|gb|AEB87544.1| Recombinational DNA repair ATPase, RecF_1 [Staphylococcus aureus
           subsp. aureus T0131]
          Length = 729

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 139/418 (33%), Gaps = 74/418 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           + I  L I  FRNY S    FD +    +G+N  GKTN L A+  L   S     +    
Sbjct: 1   MFISTLQIRNFRNYESEIFRFDNETNTIIGENDSGKTNALTALRILLDDSYYYSSKTLKE 60

Query: 62  ADV---TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           +D     + G    +    A  EG        I  E  D+     + +N     +++EL 
Sbjct: 61  SDFFHGIQNGWQGHWIIISATFEG--------ISEEEFDNEICASISLNSESQTILEELI 112

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR-----RMIDFERLMRGRNRL 172
            +      V S+          R++  D        +        R+ D+E     ++ L
Sbjct: 113 SNADKG--VGSISLFIRPNKAIRKQLFDISTELDSHQFNEFRNSIRLSDYEFYYTSKSNL 170

Query: 173 ----------LTEGYFDSSWCSSIEAQMAELGVKINIA------RVEMINALSSLIMEYV 216
                     L     D+   +  E   A LG +I+++       V  ++AL  ++ E  
Sbjct: 171 NFCINENYDKLVGRLNDNIASNPEEDDEALLGSRIDMSDIFKHISVVYVDALRDVLREMK 230

Query: 217 -QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-----------GRKMDSMSRRT 264
             +     I  ++   +     +S   + ++  + +              R+++S+   +
Sbjct: 231 NNRNPVKRIMETIESKISSDNVESLKTIIQQLNETITSVPEIRKIGENINRQLNSIIG-S 289

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQK----------------VVLVGIFLAHARLIS 308
           +  P+         D        S    K                ++ + + +       
Sbjct: 290 VYSPNLLLSSTMSDDMGSLAKFLS---MKPEQNIDLDLLGLGHLNMIYLALKIVEFEA-C 345

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRI--VTDIGSQIFMTGTDKSVFDSLNETAKF 364
            +     I+L++E  AH+    +  LF    +    +QI MT T       ++E ++ 
Sbjct: 346 RSRELLNIMLIEEPEAHIHHHIQKTLFEGLNLQKNYTQILMT-THSVHLAEVSEISRM 402


>gi|237745024|ref|ZP_04575505.1| exonuclease SBCC [Fusobacterium sp. 7_1]
 gi|229432253|gb|EEO42465.1| exonuclease SBCC [Fusobacterium sp. 7_1]
          Length = 921

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 17/170 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62
           + IK + +  +R+++++ + F     + +G NG GKT+ILEAIS +      R       
Sbjct: 1   MIIKKVQLENYRSHSNITVEFTKGINLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVIRVVDELN 117
              + G  S       +       ++  +      +          + +  +   ++EL 
Sbjct: 61  SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDMTGSEYDGDIQEKLEELC 120

Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157
              +         +         IF     +R    +++    I      
Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKDREEIFNKIFNTQIYKEMYD 170


>gi|261206946|ref|ZP_05921635.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566767|ref|ZP_06447180.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|260078574|gb|EEW66276.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161444|gb|EFD09331.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|302179968|gb|ADK98536.1| hypothetical protein [Enterococcus faecium]
          Length = 729

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 139/418 (33%), Gaps = 74/418 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           + I  L I  FRNY S    FD +    +G+N  GKTN L A+  L   S     +    
Sbjct: 1   MFISTLQIRNFRNYESEIFRFDNETNTIIGENDSGKTNALTALRILLDDSYYYSSKTLKE 60

Query: 62  ADV---TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           +D     + G    +    A  EG        I  E  D+     + +N     +++EL 
Sbjct: 61  SDFFHGIQNGWQGHWIIISATFEG--------ISEEEFDNEICASISLNSESQTILEELI 112

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR-----RMIDFERLMRGRNRL 172
            +      V S+          R++  D        +        R+ D+E     ++ L
Sbjct: 113 SNADKG--VGSISLFIRPNKAIRKQLFDISTELDSHQFNEFRNSIRLSDYEFYYTSKSNL 170

Query: 173 ----------LTEGYFDSSWCSSIEAQMAELGVKINIA------RVEMINALSSLIMEYV 216
                     L     D+   +  E   A LG +I+++       V  ++AL  ++ E  
Sbjct: 171 NFCINENYDKLVGRLNDNIASNPEEDDEALLGSRIDMSDIFKHISVVYVDALRDVLREMK 230

Query: 217 -QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-----------GRKMDSMSRRT 264
             +     I  ++   +     +S   + ++  + +              R+++S+   +
Sbjct: 231 NNRNPVKRIMETIESKISSDNVESLKTIIQQLNETITSVPEIRKIGENINRQLNSIIG-S 289

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQK----------------VVLVGIFLAHARLIS 308
           +  P+         D        S    K                ++ + + +       
Sbjct: 290 VYSPNLLLSSTMSDDMGSLAKFLS---MKPEQNIDLDLLGLGHLNMIYLALKIVEFEA-C 345

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRI--VTDIGSQIFMTGTDKSVFDSLNETAKF 364
            +     I+L++E  AH+    +  LF    +    +QI MT T       ++E ++ 
Sbjct: 346 RSRELLNIMLIEEPEAHIHHHIQKTLFEGLNLQKNYTQILMT-THSVHLAEVSEISRM 402


>gi|328955641|ref|YP_004372974.1| condensin subunit Smc [Coriobacterium glomerans PW2]
 gi|328455965|gb|AEB07159.1| condensin subunit Smc [Coriobacterium glomerans PW2]
          Length = 1179

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/280 (20%), Positives = 99/280 (35%), Gaps = 32/280 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++A    +VF+    + VG NG GK+NI +AI   L     R  R  +
Sbjct: 1   MYLKSLTLKGFKSFADRAHMVFEPGLAVIVGPNGSGKSNISDAILWVLGEQSARQLRGQA 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   GS +      A V  +   AD  + +E  +    R +         IN    R
Sbjct: 61  MEDVIFSGSSARQQVGVAEVTLVLDNADHVLPVEFEEVAITRRMYRSGESEYLINSSPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         L K          +D I      ERR  ++        + RR      
Sbjct: 121 LMDIQDVLHDSGLGKDTHSIISQGKLDAILQSRPEERRALIEEAAGIAKHKRRRERS--- 177

Query: 164 RLMRGRNRLLTEGYFDSSWC--SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
                R     + +   +      I  Q+  L  ++++AR      L++   E  Q    
Sbjct: 178 ----QRKIASMDEHLKRAHDIRREIARQLKPLERQVDLARTY--EELTARARELTQILAV 231

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             ++   + + + +      A + E A+     R+ D   
Sbjct: 232 DELRRLQSSWSELETRSKESAAELELARYRLSERERDLEK 271


>gi|269926523|ref|YP_003323146.1| chromosome segregation protein SMC [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790183|gb|ACZ42324.1| chromosome segregation protein SMC [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 1181

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 94/274 (34%), Gaps = 35/274 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +KI  L I  F+++++  L  FD   T  VG NG GK+NILEAI ++   +     R   
Sbjct: 1   MKINSLKIQGFKSFSNHTLLEFDHGITAIVGPNGSGKSNILEAIRWVLGEQSYSLLRSKK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKL--------ETRDDRSVRCLQINDVVIR 111
             DV   GSP       A VE      D SI L                    IN    R
Sbjct: 61  SEDVIWAGSPGKPRAGMAEVEISIDNHDKSIPLPYEEISITRRAYRSGENEYLINGRKAR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM----IDFERLMR 167
               L     I  ++       +  S++        V  I P HR  +     D     +
Sbjct: 121 ----LRDVQEIGAIIGESFTFINQGSVD-------EVLLISPEHRTVLLEQAADITHHFK 169

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            R+  L          + +E  +  +   +N +R  + + +  +     ++     ++  
Sbjct: 170 RRDETLKR-------LAEVEDNLRRVEDLLNDSRPRLKSLIKQVNNLRSKEVEEEKLRQL 222

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           L  +   +       ++    +K+    + D + 
Sbjct: 223 LEAYYSRQIQDLESQIESARHRKVHLQNRRDQIL 256


>gi|258652111|ref|YP_003201267.1| chromosome segregation protein SMC [Nakamurella multipartita DSM
           44233]
 gi|258555336|gb|ACV78278.1| chromosome segregation protein SMC [Nakamurella multipartita DSM
           44233]
          Length = 1214

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 98/283 (34%), Gaps = 36/283 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L  +   T  VG NG GK+N+++AI+++      +  R   
Sbjct: 1   MHLKSLTMKGFKSFASSTTLRLEPGITAVVGPNGSGKSNVVDAIAWVLGEQGAKALRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTADRPPLGRAEVTLTIDNSDGALPIDYAEVSITRRMFRDGVGEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +D +      +RR F++     +  R        E
Sbjct: 121 LLDIQELLSDSGIGREMHVIVGQGQLDAVLQARPEDRRAFVEEAAGVLKHR-----KRRE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA----------RVEMINALSSLIM 213
           + +R  + +       +   + I  Q+  LG +  +A          R   +  L+  + 
Sbjct: 176 KTIRKLDAMQANLNRLTDLTAEIRRQLGPLGRQAAVARRAAGVQADLRDARMRLLADELT 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           + + K     +          +  +      E  +    + R+
Sbjct: 236 QILTKIEQDAVDEQTAVEHRNRVQRDLAEATERLSTAEAELRE 278


>gi|291559422|emb|CBL38222.1| RecF/RecN/SMC N terminal domain [butyrate-producing bacterium
           SSC/2]
          Length = 489

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 127/379 (33%), Gaps = 69/379 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + I  F+ Y    ++FD    I VGDN  GK+ ILEAI+    G          +
Sbjct: 1   MFIDKVKIHNFKCYRDFEIIFDEGLNIVVGDNEAGKSTILEAINLALTG----------I 50

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R              G     +IS  +  +D      + ++ V I     L       +
Sbjct: 51  IR--------------GKSIWNEISQYIFNKDAVEEYIISLSTVPIA----LPYISIEIY 92

Query: 125 LVPSMDRIFSG-LSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRN-RLLTEGYFDS 180
              + + + +G  + +R    +   F  A + ++     ++E L+   N + L   Y+D 
Sbjct: 93  FGGNENPLMNGDGNSDRNSSAEGFCFKIAFNEKYAD---EYEALLSQGNIKSLPIEYYDI 149

Query: 181 SWC----SSIEAQMAELGVKIN---IARVE-----MINALSSLIMEY--VQKENFPHIKL 226
            W       I  +       +      R +      ++ +    +E   +      H K+
Sbjct: 150 IWTTFARDVITTRSIPYKSCLIDSSEYRYQSGSDVYLSRIIKGTLEIEDITSIAQAHRKM 209

Query: 227 SLTGFLDGKFDQSFCALKEE-YAKKLFDGRKMDSMSRR---TLIGPHRSDLIVDYCDKAI 282
             +   D   +     + ++           ++ +++      +     ++   Y  K  
Sbjct: 210 RDSFINDPSIEAINTKINQDTSLTDKKIALSVELVTKNAWENSLVTQLDEIPFYYVGK-- 267

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-- 340
                  GEQ      I      L   T+  A I+LL+E   HL   + N L + ++   
Sbjct: 268 -------GEQ----CVIK-TELALAKRTSKNASIILLEEPENHLSHTRLNQLIKCISKQY 315

Query: 341 IGSQIFMTGTDKSVFDSLN 359
              QI ++     V + L 
Sbjct: 316 AEKQILISTHSSFVVNKLG 334


>gi|237808367|ref|YP_002892807.1| RecF/RecN/SMC N domain-containing protein [Tolumonas auensis DSM
           9187]
 gi|237500628|gb|ACQ93221.1| RecF/RecN/SMC N domain protein [Tolumonas auensis DSM 9187]
          Length = 650

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 65/387 (16%), Positives = 120/387 (31%), Gaps = 53/387 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP----GRGFRRA 59
           + +  L I  FR +     +       + VG+NG GKT I+ AI  L      GR    +
Sbjct: 1   MYLSNLKIQGFRCFDKDFNVQLTNGLNVIVGENGAGKTAIISAIRQLFHDSESGRYSITS 60

Query: 60  SY--ADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDR------SVRCLQINDVVI 110
               +     G + + FS  A  +G++ +  +++                   +I     
Sbjct: 61  DDFYSPFIAGGLAATSFSIGAEFDGLDVMDKVALLPWVGASNTALLNIQAENREIRGQFK 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           RV+       + S   P +  +   + +   R  +  +         R     +L++  N
Sbjct: 121 RVI--WGGKSKSSQFDPELLDLIQCIYLPPLRDAESKLSN------GRQSRLSKLLKALN 172

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
           R   +          +E  + E    +       I   + LI E + K    H     + 
Sbjct: 173 RKKLKQCRIKGELHPLEESVKEFNESLAADDKLSIKDANKLITENLTKAIGHHFGQQTSI 232

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                 +  F  + E      F                   DL V+       ++  S G
Sbjct: 233 QFA---ESDFTKIAESLTLMFFP------------------DLSVEGVVSFRELSQNSLG 271

Query: 291 EQKVVLVGIFLAHARLISNTTGFAP----ILLLDEISAHLDEDKRNALFRIVTD-----I 341
              ++ +   LA   L             +LL++E  AHL    +  L   +        
Sbjct: 272 YNNLLYIASILAELTLDDEDEYEDQPLFKLLLIEEPEAHLHPQLQIRLLNHLKKVAEENK 331

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRIS 368
             Q+ +T T  +V  S  E    + +S
Sbjct: 332 NVQVVVT-THSTVLASSVEIEAIIHLS 357


>gi|116618658|ref|YP_819029.1| condensin subunit Smc [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097505|gb|ABJ62656.1| condensin subunit Smc [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 1185

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 115/320 (35%), Gaps = 42/320 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+K L IS F+++A    +      T  +G NG GK+NI+EAI ++   +     R   
Sbjct: 1   MKLKSLEISGFKSFADKTMIELMPGMTGIIGPNGSGKSNIIEAIQWVMGEQSAKDLRGTK 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
            +DV   G+        A V      +D  ++ +  + R  R L         IN V  R
Sbjct: 61  MSDVIFGGTDKRGALNRAEVSITFDNSDHYVQSDFNEIRITRKLYRSGESSYLINGVESR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    +RR  ++ +       +++     +
Sbjct: 121 LRDIHELFMDTGLGRESFSIISQGRVESIFNAKPEDRRGIIEEVAGVYK--YKQNKEKAQ 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK-------------INIARVEM-INALS 209
           + +   +  L+          S    +AE   +             ++ AR+   I+ L+
Sbjct: 179 KELTQTSDNLSRVADIIHEIESRIDPLAEQAAEATDYLAQKERFDTLDKARLAWSIHDLN 238

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
             I    ++      +++ T       D     L ++  +++      DS+    L    
Sbjct: 239 GQISSTTKQVETHDKRVNQTKL---ALDVVNKKLLDKRQERVSAQLSRDSLQATILECTQ 295

Query: 270 RSDLIVDYCDKAITIAHGST 289
           + + ++    K +     ST
Sbjct: 296 KRERLI--GAKNLGAQQIST 313


>gi|241763005|ref|ZP_04761067.1| SMC domain protein [Acidovorax delafieldii 2AN]
 gi|241367957|gb|EER62176.1| SMC domain protein [Acidovorax delafieldii 2AN]
          Length = 674

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 58/394 (14%), Positives = 123/394 (31%), Gaps = 70/394 (17%)

Query: 5   IKIKFLNISEFRNYASLR----LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FR 57
           + +  L I  FR + +      + F    T  VG+N  GKT +++AI      R     R
Sbjct: 1   MFLSQLTIKNFRQFGAADPLFSIEFREGVTALVGENDAGKTAVIDAIRHALTTRDMEFMR 60

Query: 58  RASYADVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
                   R         +  AR+ G+      +       + +   L +     R + E
Sbjct: 61  VQPEDFHIRTDGQQATEITIRARLSGLTDGEKGAFAEYLTYEGAEVALYV-HWFARRLSE 119

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER----------- 164
                R          + SG + E   F   +   +   + R + D ER           
Sbjct: 120 TPGSRRWV-----DITVRSGPAGEGPPFDATVRQLLATAYLRPLRDAEREMSPGRGSRLS 174

Query: 165 -LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK-INIARVEMINALSSL--IMEYVQKEN 220
            ++     +     FD +   +  AQ A L +  ++     +++    +    + +  + 
Sbjct: 175 QILNNFPEIKKGQPFDPTSPPADAAQAANLSLSGLSDYLRHLVDQHEGIGGAQKAINTDY 234

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR-----RTLIGPHRSDLIV 275
             H+ L+    L G+   +         +++ +  ++D ++      R   G   ++L+ 
Sbjct: 235 LAHLSLAGEA-LHGRISFAEGGTDTARLRQILERLELDLLAGPDGRSRGTYGLGSNNLLF 293

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
             C                           L+       P+LL++E  AHL   ++  L 
Sbjct: 294 MAC------------------------ELLLLGKEPDGLPLLLIEEPEAHLHPQRQLRLM 329

Query: 336 RIVTDI----------GSQIFMTGTDKSVFDSLN 359
             +               Q+ +T    ++   + 
Sbjct: 330 EFLEAAAEPLAEGTRRQVQVIVTSHSPNLTSKIP 363


>gi|19703857|ref|NP_603419.1| exonuclease SBCC [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
 gi|19714015|gb|AAL94718.1| Exonuclease SBCC [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586]
          Length = 921

 Score = 67.6 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 17/170 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62
           + IK + +  +R++++  + F     + +G NG GKT+ILEAIS +      R       
Sbjct: 1   MIIKKVQLENYRSHSNTTVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRTGKETGK 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-----QINDVVIRVVDELN 117
              + G  S       +       ++  +      +          + +  +   ++EL 
Sbjct: 61  SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDMTGSEYDGDIQEKLEELC 120

Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157
              +         +         IF      R    +++    I      
Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKAKPKNREEIFNKIFNTQIYKEMYD 170


>gi|289168051|ref|YP_003446320.1| chromosome condensation and segregation SMC protein [Streptococcus
           mitis B6]
 gi|288907618|emb|CBJ22455.1| chromosome condensation and segregation SMC protein [Streptococcus
           mitis B6]
          Length = 1179

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 113/289 (39%), Gaps = 34/289 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGR----NRLLTEGYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++      NRL    Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLNRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
             + +    +L+    L   + Q    L+EE   +    ++ D  +  T
Sbjct: 238 KAELDSTEEELAQVQELLTSYYQKREKLEEE--NQNLKKQRQDLQAEMT 284


>gi|172057913|ref|YP_001814373.1| chromosome segregation protein SMC [Exiguobacterium sibiricum
           255-15]
 gi|171990434|gb|ACB61356.1| chromosome segregation protein SMC [Exiguobacterium sibiricum
           255-15]
          Length = 1189

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 110/299 (36%), Gaps = 53/299 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++AS   L F    T  VG NG GK+NI +A+ ++      +  R A 
Sbjct: 1   MYLKRIEINGFKSFASRTELDFLPGVTAVVGPNGSGKSNISDAVRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             DV   GS       FA V  +      ++ L  ++    R +         +N    R
Sbjct: 61  MEDVIFAGSISEHRKQFAEVTLVLDNESGTVALPYQEINVTRRVTRNGDSDYFLNKKPCR 120

Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D L+  +       +         +++ SG   ERR  ++             ++ + 
Sbjct: 121 LKDVLDLFMDTGLSRDAFAIIGQGRVEQVISGKPEERRSVIEE---------AAGVLKYR 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI---------------NIARVEMINA- 207
              +   R LT+   +    S ++  + ELG +I                  R + +   
Sbjct: 172 NRKKQAERKLTDTETN---LSRVDDILYELGGRIEPLREQASLAKEFLVARERYDFLERG 228

Query: 208 -LSSLIMEYVQKE---NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            +++ I +Y+ +    +            + +  Q   A +E     L + R++++  +
Sbjct: 229 IIATEIEQYMTQLTDVSTEIESCQAQLLAEQERLQETIATRETQETSLEEKRRLETEMQ 287


>gi|227833423|ref|YP_002835130.1| chromosome segregation protein [Corynebacterium aurimucosum ATCC
           700975]
 gi|227454439|gb|ACP33192.1| chromosome segregation protein [Corynebacterium aurimucosum ATCC
           700975]
          Length = 1167

 Score = 67.2 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 21/171 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATNLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MQDVIFAGAGDRKALGRAEVTLTIDNSDGALPIDYSEVSVTRRMFRDGASEYEINGAKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
           ++D         + + + I      +  I      +RR +++     +  R
Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLAEILESRPEDRRAYIEEAAGVLKHR 171


>gi|78188238|ref|YP_378576.1| ATPase [Chlorobium chlorochromatii CaD3]
 gi|78170437|gb|ABB27533.1| ATPase [Chlorobium chlorochromatii CaD3]
          Length = 403

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 65/396 (16%), Positives = 126/396 (31%), Gaps = 90/396 (22%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE--------AISFLSP--GR 54
           +++K + +  FR      + F  + T+ +G NG GKT IL+        A+++L    GR
Sbjct: 1   MRLKSMRLENFRAVEHAVIEFGNRLTLLIGANGSGKTTILDGIAIALGAALTYLPTLSGR 60

Query: 55  GFRRASYADVTRIGSPSFFSTFA----------RVEGMEGLADISIKLETRDDRSVRCLQ 104
            F++       R  S + ++  A          R++  +     S  +   D        
Sbjct: 61  SFKKGDLHQ--RHNSIAPYTRIALETTTGLKWDRIQRRDKSKSTSKLVPAADGIRALEQF 118

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM--------VFAIDPRHR 156
           ++  ++  +++ + +L   ++   + R    +   R+ F  +             D R R
Sbjct: 119 LDATILEPMNQGSDYLLPLFIYYGVSRALLDVPASRKGFTKKQHRFDALVHCLHADSRFR 178

Query: 157 RR-MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
              M  + + +   NRL  E          ++                 I A+   I E 
Sbjct: 179 SAFMWFYNKELEE-NRLQKEKKSFEVTLRELDVV------------RSAITAMFPDISEP 225

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
               N     +   G L          L + Y   L  G  +D  SR  +  PH  D   
Sbjct: 226 HIALNPLRFVVRQQGEL-----MDIAQLSDGYKTLL--GVVIDLSSRLAMANPHLDDP-- 276

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                                    LA             I+++DE+  HL    +  + 
Sbjct: 277 -------------------------LA----------AEAIVMIDEVDLHLHPSWQQHVV 301

Query: 336 RIVTD--IGSQIFMTGTDKSVFDSLNETAKFMRISN 369
             +      +Q  +T     + +++N   K  +I  
Sbjct: 302 GDLLRTFKNTQFIITTHSPFIVEAINNHIKRQQIEG 337


>gi|154483580|ref|ZP_02026028.1| hypothetical protein EUBVEN_01284 [Eubacterium ventriosum ATCC
           27560]
 gi|149735490|gb|EDM51376.1| hypothetical protein EUBVEN_01284 [Eubacterium ventriosum ATCC
           27560]
          Length = 1186

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/276 (20%), Positives = 101/276 (36%), Gaps = 36/276 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60
           + +K + I  F+++A+ +   F    T  VG NG GK+N+ +A+ ++      +  R + 
Sbjct: 1   MYLKNIEIHGFKSFANKINFQFHNGITGIVGPNGSGKSNVADAVRWVLGEQKTKQLRSSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ +     +       +  +   +I    + +  R  RS      IN   +R
Sbjct: 61  MEDVIFAGTENRKPMGYAYVAITFDNADHKLNIDYDEVTVSRRLFRSGESEYMINGTQVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +DRI SG   ERR   D     +    +RR  D  
Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDRILSGKPEERRELFDEAAGIVK--FKRRKNDAM 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA----------RVEMINALSSLIM 213
           + +  +N+ L      S     +E Q+  L  +   A          RV  +N     I 
Sbjct: 179 KKLDDQNQNLVRV---SDILGELERQVVPLEKQCEKAKKYLVLKEDLRVNDVNMFLIEIN 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           E   + +    K+ +        +  F  +K +Y K
Sbjct: 236 EIRNRLSQIDEKIKIASSDMESANAEFEKIKADYTK 271


>gi|257451436|ref|ZP_05616735.1| exonuclease SBCC [Fusobacterium sp. 3_1_5R]
 gi|317058016|ref|ZP_07922501.1| exonuclease SBCC [Fusobacterium sp. 3_1_5R]
 gi|313683692|gb|EFS20527.1| exonuclease SBCC [Fusobacterium sp. 3_1_5R]
          Length = 921

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 96/284 (33%), Gaps = 34/284 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
           ++IK + ++ +R+++ + +VF     + +G NG GKT+ILEAI         R       
Sbjct: 1   MQIKKVVLNNYRSHSHIEVVFSKGINLILGKNGRGKTSILEAIGLALFHMTDRTGKTKGK 60

Query: 64  -VTRIGSPSF--FSTFARVEGMEG---------------LADISIKLETRDDRSVRCLQI 105
              + G      F  F   +G E                L D+  + E RD+   +  ++
Sbjct: 61  TFMKYGEKECSIFIEFLGNDGREYSIFHHYFLKKPKVSILKDMQTEEEYRDNIEEKLEEL 120

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFE 163
             V     D       I         IF      R R  +++      +          E
Sbjct: 121 CGVKAEYRDIY--ENVIVAKQNDFINIFKETPENRARVFNKIFNTEIYNKLFIDLKGFVE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMA---------ELGVKINIARVEMINALSSLIME 214
           + ++ +  L  E         + E +M          +L      AR+E    ++  I +
Sbjct: 179 QYLKEKEMLEVEENTLRLTLENKEERMEMLQQTEEKWKLYALKKEARLEEKQKIAKKIEQ 238

Query: 215 Y-VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           Y   K  F  IK   + F + K  Q+   L+E         +  
Sbjct: 239 YEFIKREFETIKSKFS-FQEQKIRQNKKELQERLVLAKKAKKAR 281


>gi|91773466|ref|YP_566158.1| SMC-like protein [Methanococcoides burtonii DSM 6242]
 gi|91712481|gb|ABE52408.1| DNA-binding Structural Maintenance of Chromosomes Protein with
           ATPase domain [Methanococcoides burtonii DSM 6242]
          Length = 888

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 10/113 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR-ASY-- 61
           +K+K + +   R+Y  L + FD   T+  G NG GK+++LEA      G   R  +    
Sbjct: 1   MKLKRVRVENIRSYIDLDISFDDGVTVVSGVNGSGKSSLLEACFTGLFGS--RALSKDFV 58

Query: 62  -ADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVR---CLQINDVV 109
            +D+ R G+  +        +G     +   K++ R  ++       ++ND V
Sbjct: 59  ISDIIRKGATKASIVVDFENQGNYYSIEQGYKVDARSGKASNNRSVFKVNDEV 111


>gi|56478791|ref|YP_160380.1| ATP-binding protein [Aromatoleum aromaticum EbN1]
 gi|56314834|emb|CAI09479.1| hypothetical ATP-binding protein [Aromatoleum aromaticum EbN1]
          Length = 432

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 16/141 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS------FLSPGRGFRR 58
           + I  L +  FR +      F +   + VG NG GKT++L+AI+          G+  R 
Sbjct: 1   MHIDTLRVENFRCFKQETFEFQSGFNLLVGVNGSGKTSLLKAIAAGLATPINGLGKSPRW 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGM---EGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
                       +       ++G    E    + I+LE     S R   +         +
Sbjct: 61  PHA------EEANARLALIELQGRVRYERCYPVRIELEGEVCGSARSWWVEQPGPASQSK 114

Query: 116 LNKHLRISWLVPSMDRIFSGL 136
             +H   S +     RI  G 
Sbjct: 115 F-EHTVFSAIADESARIAQGG 134


>gi|167767268|ref|ZP_02439321.1| hypothetical protein CLOSS21_01787 [Clostridium sp. SS2/1]
 gi|167711243|gb|EDS21822.1| hypothetical protein CLOSS21_01787 [Clostridium sp. SS2/1]
          Length = 545

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 65/379 (17%), Positives = 127/379 (33%), Gaps = 69/379 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + I  F+ Y    ++FD    I VGDN  GK+ ILEAI+    G          +
Sbjct: 1   MFIDKVKIHNFKCYRDFEIIFDEGLNIVVGDNEAGKSTILEAINLALTG----------I 50

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R              G     +IS  +  +D      + ++ V I     L       +
Sbjct: 51  IR--------------GKSIWNEISQYIFNKDAVEEYIISLSTVPIA----LPYISIEIY 92

Query: 125 LVPSMDRIFSG-LSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRN-RLLTEGYFDS 180
              + + + +G  + +R    +   F  A + ++     ++E L+   N + L   Y+D 
Sbjct: 93  FGGNENPLMNGDGNSDRNSSAEGFCFKIAFNEKYAD---EYEALLSQGNIKSLPIEYYDI 149

Query: 181 SWC----SSIEAQMAELGVKIN---IARVE-----MINALSSLIMEY--VQKENFPHIKL 226
            W       I  +       +      R +      ++ +    +E   +      H K+
Sbjct: 150 IWTTFARDVITTRSIPYKSCLIDSSEYRYQSGSDVYLSRIIKGTLEIEDITSIAQAHRKM 209

Query: 227 SLTGFLDGKFDQSFCALKEE-YAKKLFDGRKMDSMSRR---TLIGPHRSDLIVDYCDKAI 282
             +   D   +     + ++           ++ +++      +     ++   Y  K  
Sbjct: 210 RDSFINDPSIEAINTKINQDTSLTDKKIALSVELVTKNAWENSLVTQLDEIPFYYVGK-- 267

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-- 340
                  GEQ      I      L   T+  A I+LL+E   HL   + N L + ++   
Sbjct: 268 -------GEQ----CVIK-TELALAKRTSKNASIILLEEPENHLSHTRLNQLIKCISKQY 315

Query: 341 IGSQIFMTGTDKSVFDSLN 359
              QI ++     V + L 
Sbjct: 316 AEKQILISTHSSFVVNKLG 334


>gi|313906345|ref|ZP_07839686.1| SMC domain protein [Eubacterium cellulosolvens 6]
 gi|313468809|gb|EFR64170.1| SMC domain protein [Eubacterium cellulosolvens 6]
          Length = 408

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 31/45 (68%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + +K + +  FR Y +L + F+++ TI VGDNG GK+ +L+A+S 
Sbjct: 1  MYLKSIKLHNFRCYENLSVDFNSEFTILVGDNGAGKSALLDAVSI 45


>gi|225570732|ref|ZP_03779755.1| hypothetical protein CLOHYLEM_06833 [Clostridium hylemonae DSM
           15053]
 gi|225160475|gb|EEG73094.1| hypothetical protein CLOHYLEM_06833 [Clostridium hylemonae DSM
           15053]
          Length = 195

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 73/191 (38%), Gaps = 22/191 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A  ++  F    T  VG NG GK+N+ +A+   L     +  R  S
Sbjct: 1   MYLKSIEVQGFKSFAHKIKFDFHNGITAIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    I  +  T   +  R       IN    R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNSDHHLPIDYEEVTVARKLYRSGESEYLINGSGCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+ M   +
Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKNMS-VK 179

Query: 164 RLMRGRNRLLT 174
           +L   R  LL 
Sbjct: 180 KLEEERQNLLR 190


>gi|217077030|ref|YP_002334746.1| exonuclease sbcc, putative [Thermosipho africanus TCF52B]
 gi|217036883|gb|ACJ75405.1| exonuclease sbcc, putative [Thermosipho africanus TCF52B]
          Length = 927

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 101/290 (34%), Gaps = 31/290 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + +  FR +      F     + +G NG GK++I EA+S     +  R  +   +
Sbjct: 1   MIIKKVCLKNFRVHKDREFEFKPGINLLLGKNGTGKSSIFEALSVAFFSKSPRG-TLNSI 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                             +G  +  ++      +S    +   +     ++++++++   
Sbjct: 60  ITNDGSKKAQIKVEFIASDGK-EYVLEKSIGQSKSSLYSKDGSLKYEGKEDISEYIKTIV 118

Query: 125 LVPS-------------MDRIFSGLSMERRRFLDRMV-----FAIDPRHRRRMIDFERLM 166
            +               +  IFS    ER++  DR+        I  +  +    +E+ +
Sbjct: 119 GINEEVFNKVIYTYQNQLTDIFSKTPAERKQLFDRLFETDVYREISDKLFKVQQSYEKDL 178

Query: 167 RGRNRLLTEGYFD---------SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
                 L +   +              S E ++ E+  +I   R E +  L     + ++
Sbjct: 179 EVNKVELEKIKLELESEEFADLEERIKSHEEKLEEVKNEIENLRAE-VQNLRKR-QKSLE 236

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
                + ++     + GK  +   +  ++  K+L D +K   +  +T  G
Sbjct: 237 DIIESYKRIKKDLQMLGKEKEHLNSKLDDLNKRLEDAKKAKDIVEKTKKG 286



 Score = 39.5 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS---Q 344
           S GEQ  V + I  A ++++S +       +LDE + +LD +++  L   +  +     Q
Sbjct: 852 SGGEQVSVAIAIRAALSKILSKSD----FYILDEPTINLDVERKKLLAENIEKLFEDVKQ 907

Query: 345 IFMTGTDKSVFDSLNET 361
           +F+  T    F  + E 
Sbjct: 908 VFI-ITHDEEFSHMAEN 923


>gi|71735912|ref|YP_272712.1| hypothetical protein PSPPH_0409 [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|71556465|gb|AAZ35676.1| conserved hypothetical protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
          Length = 421

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +++  L++  FR Y      F     + VG NG GKT++L  +
Sbjct: 1  MRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGV 43


>gi|320322043|gb|EFW78139.1| hypothetical protein PsgB076_24659 [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320330851|gb|EFW86825.1| hypothetical protein PsgRace4_05763 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 421

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +++  L++  FR Y      F     + VG NG GKT++L  +
Sbjct: 1  MRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGV 43


>gi|255281053|ref|ZP_05345608.1| putative RecF/RecN/SMC N domain protein [Bryantella formatexigens
           DSM 14469]
 gi|255268501|gb|EET61706.1| putative RecF/RecN/SMC N domain protein [Bryantella formatexigens
           DSM 14469]
          Length = 713

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 100/283 (35%), Gaps = 33/283 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ ++  F    T  VG NG GK+N+ +A+   L     +  R A+
Sbjct: 1   MYLKSIEVQGFKSFANKMKFQFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAN 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ +     F S    ++  +         + +  R  RS     QIN    R
Sbjct: 61  MQDVIFSGTENRKPLGFASVAITLDNSDHQLPTDYSEVTVTRRLYRSGESEYQINGTNCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +    +RR +  +
Sbjct: 121 LRDIQELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVK--FKRRKLTTQ 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSLIMEYVQK 218
           + +   N  LT         S I  Q+  L       KI + R E +  L   I  ++ +
Sbjct: 179 KKLEDENNNLTRVR---DILSEITRQLGPLQKQSEKAKIYLQRKEELKTL--DINMFLLE 233

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +     +L          D       E+      +    +   
Sbjct: 234 DGRVKAQLEEVCQKISISDGDIARAGEQLEAAKSEYEAAEQRM 276


>gi|262184413|ref|ZP_06043834.1| chromosome segregation protein [Corynebacterium aurimucosum ATCC
           700975]
          Length = 806

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 65/171 (38%), Gaps = 21/171 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATNLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MQDVIFAGAGDRKALGRAEVTLTIDNSDGALPIDYSEVSVTRRMFRDGASEYEINGAKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
           ++D         + + + I      +  I      +RR +++     +  R
Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLAEILESRPEDRRAYIEEAAGVLKHR 171


>gi|330984716|gb|EGH82819.1| hypothetical protein PLA107_06796 [Pseudomonas syringae pv.
          lachrymans str. M301315]
          Length = 421

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +++  L++  FR Y      F     + VG NG GKT++L  +
Sbjct: 1  MRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGV 43


>gi|284164775|ref|YP_003403054.1| SMC domain protein [Haloterrigena turkmenica DSM 5511]
 gi|284014430|gb|ADB60381.1| SMC domain protein [Haloterrigena turkmenica DSM 5511]
          Length = 895

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 96/273 (35%), Gaps = 26/273 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-RGFRRASYAD 63
           +++  + +  F+ Y    L  +   T+  G NG GK+ +LEA+ F   G +     +  D
Sbjct: 1   MRVDRVRLLNFKCYGEADLGLERGVTVVHGVNGSGKSTLLEAVFFALYGSKALDDRTLDD 60

Query: 64  VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIRVVD 114
           V   G        +   +G E   +  +KL      + +C+        +    V R V 
Sbjct: 61  VIMTGEEEAEVELWFTHDGREYHVERRLKLRGDRATTTKCVLETPTETFEGARDVRREVT 120

Query: 115 ELNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE-RLMR 167
           EL +    +++  +  R      +      +R+  +D ++          + ++  R   
Sbjct: 121 ELLRMDAEAFVNCAYVRQGEVNKLIHASPSDRQDMIDDLLQ------LGALEEYRERASD 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIK 225
            R  + T           +  Q+ +   K    R+  + +  + + E + +  E     +
Sbjct: 175 ARLGVKTVLDGQREVLEDLHKQVEQKEEKDLHERLNGLESRRADVREKIDRFEEQREQAR 234

Query: 226 LSLTGFLDG-KFDQSFCALKEEYAKKLFDGRKM 257
            +L    D  +  +      +   +++ + R  
Sbjct: 235 QTLETAEDVLERHEETREEIDRLDEEIEELRSK 267


>gi|225164963|ref|ZP_03727174.1| chromosome segregation protein SMC [Opitutaceae bacterium TAV2]
 gi|224800421|gb|EEG18806.1| chromosome segregation protein SMC [Opitutaceae bacterium TAV2]
          Length = 777

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 89/275 (32%), Gaps = 39/275 (14%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++A    L F+   T  VG NG GK+N+ +AI   L     +  R   
Sbjct: 1   MHLKALKLHGFKSFADQSTLRFEPGVTAIVGPNGCGKSNVADAIRWVLGEQSAKALRGGK 60

Query: 61  YADVTRIGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
             DV   G+           S   T    +      +I I      D        N    
Sbjct: 61  MQDVIFEGADTRKPAQMCEVSLILTDCEKQLGSEFHEIEIMRRVYRDGGGEYFF-NGQPC 119

Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           R+ D         + +          +D+I S    ERR   +             +  +
Sbjct: 120 RLKDIQKLFMDTGIGRTSYSIMAQGQIDQILSSKPEERRAVFEEAAG---------ITKY 170

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           +   +    L      D +     +  + E+G +I   + +   AL    + +  +    
Sbjct: 171 KAQRKE--ALQKLAQTDQNLVRVADV-VGEVGRQIGSLKRQASKALRYKKLSWRLR---- 223

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           H+ L+  G+   +   +   L+E+  K        
Sbjct: 224 HLALAHHGYHHEQVSATLATLEEQVIKLRAAAETR 258


>gi|225020942|ref|ZP_03710134.1| hypothetical protein CORMATOL_00953 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946314|gb|EEG27523.1| hypothetical protein CORMATOL_00953 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 538

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 120/385 (31%), Gaps = 77/385 (20%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
           + I  ++I  +R         +    I VG N  GK+ +LEAIS    GR  G R +   
Sbjct: 1   MMITKIHIQGYRKLKEFLFEPNNGMNIIVGGNDAGKSTLLEAISLCLTGRINGQRASDVL 60

Query: 63  DVTRIGSPSFFSTFARVEGMEG----LADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           +     +      FA  +  +        I + LE           +N++       L+ 
Sbjct: 61  NPYWFNTELVAEFFAARKNNQTVPPPEIRIELHLEVSKGELENMRGVNNMKREDAAGLS- 119

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP-------RHRRRMIDFE-RLMRGRN 170
                W+ P  + +           LD     +D         +     +F   ++  R 
Sbjct: 120 ----MWIHPDPEYL---------EELDEYFSQVDCPPIIPIEYYLVEWKNFAGTIIFNRP 166

Query: 171 RLLTEGYFDSSW------CSSIEAQMAEL------GVKINIARVEMINALSSLIMEYVQK 218
           + L     +S              Q+ E         K+++   ++ N L S ++E +  
Sbjct: 167 KGLGVAVINSRTIRSDRGMDFYTKQLLESKLDPKDRNKVSVKHRQLRNNLGSELIEDINT 226

Query: 219 ENFPHIKLSLTG--FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
               ++  S +G   +  + DQS     E                  + + P    +   
Sbjct: 227 SLHENLSPSESGRWLVGLQIDQSRSTSWE------------------STLIPEIDRIPFS 268

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
                        G Q +    + L+ +            LL++E   HL   +   L  
Sbjct: 269 MSG---------QGAQVIAKASLALSQSE------DSTSFLLIEEPENHLTHTRLRELLS 313

Query: 337 IVT--DIGSQIFMTGTDKSVFDSLN 359
           I+    +G Q+F+T     V + L 
Sbjct: 314 IIERNSMGRQVFITTHSSYVLNRLG 338


>gi|291614647|ref|YP_003524804.1| SMC domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291584759|gb|ADE12417.1| SMC domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 685

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK L I  FR    + + FD +  I VG N +GKT ILE+I  
Sbjct: 1  MHIKTLRIKNFRAIEDVNVEFDNRVNIIVGPNAIGKTTILESIRL 45


>gi|298485068|ref|ZP_07003165.1| Putative ATP binding protein SugR [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
 gi|298160478|gb|EFI01502.1| Putative ATP binding protein SugR [Pseudomonas savastanoi pv.
          savastanoi NCPPB 3335]
          Length = 421

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +++  L++  FR Y      F     + VG NG GKT++L  +
Sbjct: 1  MRLDHLHLQNFRCYEDAHFDFQPGFNLVVGVNGSGKTSLLLGV 43


>gi|306781120|ref|ZP_07419457.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu002]
 gi|308326060|gb|EFP14911.1| chromosome partition protein smc [Mycobacterium tuberculosis
           SUMu002]
          Length = 542

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 80/211 (37%), Gaps = 26/211 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      ++ I      +RR F++     +  R        E
Sbjct: 121 LMDVQELLSDSGIGREMHVIVGQGKLEEILQSRPEDRRAFIEEAAGVLKHR-----KRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           + +R  + +       +   + +  Q+  LG
Sbjct: 176 KALRKLDTMAANLARLTDLTTELRRQLKPLG 206


>gi|58177330|pdb|1XEW|X Chain X, Structural Biochemistry Of Atp-Driven Dimerization And Dna
           Stimulated Activation Of Smc Atpases.
 gi|58177332|pdb|1XEX|A Chain A, Structural Biochemistry Of Atp-Driven Dimerization And Dna
           Stimulated Activation Of Smc Atpases
          Length = 182

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 24/164 (14%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
           I+ L +  F++Y    + + F    T  VG NG GK+NI +AI F+  G      R +  
Sbjct: 4   IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 63

Query: 62  ADVTRIGS-PSFFSTFARVEGMEGLADISIKL---ETRDDRSVR-----CLQINDVVIRV 112
           +D+   GS     + +A V       D    +   E    R V         +N      
Sbjct: 64  SDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRA-T 122

Query: 113 VDELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRM 147
             E+   L  + + P    I              +ERR  +D +
Sbjct: 123 RSEILDILTAAMISPDGYNIVLQGDITKFIKMSPLERRLLIDDI 166


>gi|289168157|ref|YP_003446426.1| hypothetical protein smi_1318 [Streptococcus mitis B6]
 gi|288907724|emb|CBJ22561.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 728

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 137/416 (32%), Gaps = 71/416 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           + I  L I  FRNY S    FD +    +G+N  GKTN L A+  L   S     +    
Sbjct: 1   MFISTLQIRNFRNYESEIFRFDNETNTIIGENDSGKTNALTALRILLDDSYYYSSKTLKE 60

Query: 62  ADV---TRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           +D     + G    +    A  EG        I  E  D+     + +N     +++EL 
Sbjct: 61  SDFFHGIQNGWQGHWIIISATFEG--------ISEEEFDNEICASISLNSESQTILEELI 112

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR-----RMIDFERLMRGRNRL 172
            +      V S+          R++  D        +        R+ D+E     ++ L
Sbjct: 113 SNADKG--VGSISLFIRPNKAIRKQLFDISTELDSHQFNEFRNSIRLSDYEFYYTSKSNL 170

Query: 173 ----------LTEGYFDSSWCSSIEAQMAELGVKINIA------RVEMINALSSLIMEYV 216
                     L     D+   +  E   A LG +I+++       V  ++AL  ++ E  
Sbjct: 171 NFCINENYDKLVGRLNDNIASNPEEDDEALLGSRIDMSDIFKHISVVYVDALRDVLREMK 230

Query: 217 -QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-------GRKMDSMSRRTLIGP 268
             +     I  ++   +     +S   + ++  + +         G  ++      +   
Sbjct: 231 NNRNPVKRIMETIESKISSDNVESLKTIIQQLNETITSVPEIRKIGENINRQLNSIIGSV 290

Query: 269 HRSDLI--VDYCDKAITIAHGSTGEQK----------------VVLVGIFLAHARLISNT 310
           +  +L+      D        S    K                ++ + + +        +
Sbjct: 291 YSPNLLSSTMSDDMGSLAKFLS---MKPEQNIDLDLLGLGHLNMIYLALKIVEFEA-CRS 346

Query: 311 TGFAPILLLDEISAHLDEDKRNALFRI--VTDIGSQIFMTGTDKSVFDSLNETAKF 364
                I+L++E  AH+    +  LF    +    +QI MT T       ++E ++ 
Sbjct: 347 RELLNIMLIEEPEAHIHHHIQKTLFEGLNLQKNYTQILMT-THSVHLAEVSEISRM 401


>gi|255659557|ref|ZP_05404966.1| ATP binding protein [Mitsuokella multacida DSM 20544]
 gi|260848113|gb|EEX68120.1| ATP binding protein [Mitsuokella multacida DSM 20544]
          Length = 422

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 27/45 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + +K + I +F+     +L F     + +G+NG GKT++LEA++ 
Sbjct: 1  MHVKTIAIHDFKGIEHCQLTFKPGFNLIIGENGKGKTSLLEALAI 45


>gi|55378582|ref|YP_136432.1| chromosome segregation protein [Haloarcula marismortui ATCC 43049]
 gi|55231307|gb|AAV46726.1| structural maintenance of chromosomes [Haloarcula marismortui ATCC
           43049]
          Length = 908

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 26/259 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K + + +S F+ Y    L  D   T+  G NG GK+++LEA  F   G      +  DV
Sbjct: 18  MKFQRVKLSNFKCYDDADLRLDNGVTVIHGLNGSGKSSLLEACFFALYGSKALDENLGDV 77

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIRVVDE 115
             IG+       +    G +      ++       + +C+        +    V R + E
Sbjct: 78  VTIGADDCTVELWFSHAGGDYHLTRRVRATGAQPTTAKCVLETPEGNYEGARDVRRRITE 137

Query: 116 LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE-RLMRG 168
           L +    +++  +  R      + +    +R+  LD ++         ++  +  R    
Sbjct: 138 LLRMDSEAFVNCAYVRQGEVNKLINASPGDRQDMLDDLLQ------LGKLEAYRERASDA 191

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN----ALSSLIMEYVQKENFPHI 224
           R  +           S ++ Q+ E   K    R+  +      L   I     ++     
Sbjct: 192 RVGVGRVRDDKQGALSQLDEQIQEKEEKDLHERLNGLETKESELQDEIEHIEDQKATAEE 251

Query: 225 KLSLTGFLDGKFDQSFCAL 243
            L+    +  ++++    L
Sbjct: 252 TLTQAESVLEEYEEKRDEL 270


>gi|27817689|emb|CAD61116.1| hypothetical protein [Cupriavidus oxalaticus]
          Length = 712

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + I  L +  +RN+A+ +L+F       +G+NG GKTN+  AI  L            ++
Sbjct: 1  MHISKLGLVNYRNFANTKLLFQKGINTIIGENGSGKTNLFRAIRLLL---------DDNM 51

Query: 65 TR 66
           R
Sbjct: 52 IR 53


>gi|115524490|ref|YP_781401.1| SMC domain-containing protein [Rhodopseudomonas palustris BisA53]
 gi|115518437|gb|ABJ06421.1| SMC domain protein [Rhodopseudomonas palustris BisA53]
          Length = 827

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 76/232 (32%), Gaps = 42/232 (18%)

Query: 145 DRMVFAIDPRHRRRMIDFERLMR---GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
           D      D  + +     +RL+     R+  L           ++ AQ A +  +I    
Sbjct: 446 DIESKQGDHTYIKAKAKIDRLLELQAERDLGLRTHDALVKLSEALTAQAATVSAEIRKKV 505

Query: 202 VEMINALS---SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
             +++ L    + I + +Q      I+L L                E+   +      +D
Sbjct: 506 QALLDKLQTPMNDIYKVIQGIGATPIRLELPA--------------EDDTNQQRLNLLID 551

Query: 259 SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
               RT + P                 + S  +   + + + +A    I      API+ 
Sbjct: 552 FAKNRTGVQPG---------------GYLSDSQIHSLALALRMA---AIKQFNNGAPIIA 593

Query: 319 LDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNET--AKFMR 366
           LD+I    D D R  +  ++       QI +T  D+  F+ L +   AK   
Sbjct: 594 LDDIVTSYDADHRRTIAGLIASKFGDCQILITTHDERFFNYLKDQLEAKTWH 645



 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 74/202 (36%), Gaps = 30/202 (14%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ L +  FR Y   +   F  +  +     NG GK+++++A+ F+        +    +
Sbjct: 7   LQSLGLVGFRAYLQPMTFDFSKKRCLAVFAPNGSGKSSVIDALEFVF-------SKDGTL 59

Query: 65  TRIGS-----PSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVDELNK 118
            R+G       +     A     E     ++ ++    ++V    +      R +  +  
Sbjct: 60  ERLGQRAINNQAGPVALAHNLAEEAKIAPAVTIDVVSGKNVSNGSRSATGAKRPIPAVAT 119

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR--------MIDFERLMRGRN 170
            +   + VP    I  G ++  R F++  +   + R+           +++ ++ +R   
Sbjct: 120 TVNACFAVPP---IIRGHAL--RTFVE--IHTPEQRYTDVANWLQLGPLVEVQKNLRALR 172

Query: 171 RLLTEGYFDSSWCSSIEAQMAE 192
             +     D +    ++ Q+A 
Sbjct: 173 TQIKAAAEDETTLQRVDTQLAR 194


>gi|257066165|ref|YP_003152421.1| SMC domain-containing protein [Anaerococcus prevotii DSM 20548]
 gi|256798045|gb|ACV28700.1| SMC domain protein [Anaerococcus prevotii DSM 20548]
          Length = 1172

 Score = 66.9 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 21/175 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           ++++ + +  F+++A   ++ FD + T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1   MRLENVELKGFKSFADRTKIEFDEKITAVVGPNGSGKSNISDAVRWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             DV   G  S  S   A V       D ++ L     +  R +        +IN   +R
Sbjct: 61  MNDVIFQGGESSKSLNLAEVNLNFSNEDKALDLSYDKVKISRRIYRDGENEYRINGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
           + D         + K          +D I S    +RR   +        + RR 
Sbjct: 121 LKDVRELFLDTGVGKEGYSIISQGRIDEIISSSPKDRRNIFEEASGIAKHKFRRD 175


>gi|255994064|ref|ZP_05427199.1| putative RecF/RecN/SMC N domain protein [Eubacterium saphenum ATCC
           49989]
 gi|255993732|gb|EEU03821.1| putative RecF/RecN/SMC N domain protein [Eubacterium saphenum ATCC
           49989]
          Length = 1187

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++K L+I  F+++A  +++ FD   T  VG NG GK+N+ +A+ ++      R  R   
Sbjct: 1   MRLKSLSIKGFKSFADPVKIDFDEGITCIVGPNGSGKSNVSDALRWVFGEQSARTLRGYK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+              ++  + + DI    +++  R  RS     +IN    R
Sbjct: 61  MEDVIFAGTEKRRKQGLAEVTVVIDNSDRMLDIEYNEVEITRRLFRSGESEHRINGNKCR 120

Query: 112 VVD 114
           ++D
Sbjct: 121 LMD 123


>gi|238618542|ref|YP_002913367.1| Rad50 zinc hook domain protein [Sulfolobus islandicus M.16.4]
 gi|238379611|gb|ACR40699.1| Rad50 zinc hook domain protein [Sulfolobus islandicus M.16.4]
          Length = 864

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  + ++ F ++    + F  +  + VG NG GK++I++ I   S  R   R +  ++
Sbjct: 1   MRIDKITLTNFLSHEHSEIHFLGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS         +        I I  + R     R ++    V R    ++  +    
Sbjct: 60  IRKGSN---KASVTLHLSNEKDKIEIIRDIRSTTEDRLIRNQIPVARSATVVSNEIEKIL 116

Query: 125 LVPSMDRI 132
            +     +
Sbjct: 117 GIDKDIAL 124



 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 253 DGRKMDSMSRRTL-IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
              +M+ M + +   G   + +I       + I   S GE+  + + + LA A+ + + T
Sbjct: 739 KNVEMEIMPKTSRGKGSGGNIVIYTNNGDTLPIVSLSGGERIALSIALRLAIAKALMSNT 798

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357
                 +LDE + HLD+ ++  L  I+        QI +   D+ V  +
Sbjct: 799 N---FFILDEPTIHLDDQRKAYLIEIIRAAKESVPQILVVTHDEEVVQA 844


>gi|229577881|ref|YP_002836279.1| Rad50 zinc hook domain protein [Sulfolobus islandicus Y.G.57.14]
 gi|228008595|gb|ACP44357.1| Rad50 zinc hook domain protein [Sulfolobus islandicus Y.G.57.14]
          Length = 864

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  + ++ F ++    + F  +  + VG NG GK++I++ I   S  R   R +  ++
Sbjct: 1   MRIDKITLTNFLSHEHSEIHFLGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS         +        I I  + R     R ++    V R    ++  +    
Sbjct: 60  IRKGSN---KASVTLHLSNEKDKIEIIRDIRSTTEDRLIRNQIPVARSATVVSNEIEKIL 116

Query: 125 LVPSMDRI 132
            +     +
Sbjct: 117 GIDKDIAL 124



 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 253 DGRKMDSMSRRTL-IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
              +M+ M + +   G   + +I       + I   S GE+  + + + LA A+ + + T
Sbjct: 739 KNVEMEIMPKTSRGKGSGGNIVIYTNNGDTLPIVSLSGGERIALSIALRLAIAKALMSNT 798

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357
                 +LDE + HLD+ ++  L  I+        QI +   D+ V  +
Sbjct: 799 N---FFILDEPTIHLDDQRKAYLIEIIRAAKESVPQILVVTHDEEVVQA 844


>gi|118580293|ref|YP_901543.1| hypothetical protein Ppro_1874 [Pelobacter propionicus DSM 2379]
 gi|118503003|gb|ABK99485.1| conserved hypothetical protein [Pelobacter propionicus DSM 2379]
          Length = 703

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  L+I  FRN+ S +L F       +G+NG GKTN+  ++  L
Sbjct: 1  MHISCLSIRNFRNFKSAQLHFRKGINTIIGENGSGKTNLFFSLRIL 46


>gi|73670048|ref|YP_306063.1| hypothetical protein Mbar_A2572 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397210|gb|AAZ71483.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 650

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 63/407 (15%), Positives = 125/407 (30%), Gaps = 88/407 (21%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRR----- 58
           + +K +++  FR    + L  ++   + +G N  GKT++L+++   LS G   R      
Sbjct: 28  MYLKKIHVKNFRCINDINLELNSGLNVIIGANNSGKTSLLDSLRLALSIGNYSRSIYVSS 87

Query: 59  --------ASYADVTRIG------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
                      +    I       +P     F  +  +    +  ++L  R  R  +   
Sbjct: 88  EDFFVDEFGKKSQTIEIDLTFSELTPEDMGVFIEMLKVNDDGNHELELHVRYKRERK--- 144

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
            N +    V         + +   +  +F                     +   + D E 
Sbjct: 145 -NGIEKIRVRYWGGEKEANTIPIEVMELFY------------------IVYLEALRDSEN 185

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA------RVEMINALSSLIMEYVQK 218
            ++  NR    G           AQ  +   +I  +        E+I      I E+++ 
Sbjct: 186 YLKP-NRGNKLGQLFLKLVPDETAQ-EKHAQQIYESITSNEDWNELITDARKKINEHLEN 243

Query: 219 ENFPHIKLSLT-GFLDGKFDQSFCALK------EEYAKKLFDGRKMDSMSRRTLIGPHRS 271
               H  L +   F    F +    LK      ++  ++L +    +    +    PH  
Sbjct: 244 TTLEHDTLRIDIDFAPVDFTKIAERLKIYIPILKKIKRELIENIFEEEGWEKYFEYPHSD 303

Query: 272 DLIVDYCDKAITIAH-GSTGEQK------------------------VVLVGIFLA-HAR 305
            LI+    K +      S  E K                        ++ +   +     
Sbjct: 304 KLILKTDIKELLKNEVNS--ELKFKISKLEKFIQKFEIYQNGLGYNNLIYIATIIGDLIE 361

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRI---VTDIGSQIFMTG 349
            ++  +     LL++E  AHL    +N LF     +     QIF+T 
Sbjct: 362 RVNRKSENYIALLIEEPEAHLHPQLQNILFNYFKNIESKNIQIFLTS 408


>gi|227826474|ref|YP_002828253.1| Rad50 zinc hook domain protein [Sulfolobus islandicus M.14.25]
 gi|229583636|ref|YP_002842137.1| Rad50 zinc hook domain protein [Sulfolobus islandicus M.16.27]
 gi|227458269|gb|ACP36955.1| Rad50 zinc hook domain protein [Sulfolobus islandicus M.14.25]
 gi|228018685|gb|ACP54092.1| Rad50 zinc hook domain protein [Sulfolobus islandicus M.16.27]
          Length = 864

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  + ++ F ++    + F  +  + VG NG GK++I++ I   S  R   R +  ++
Sbjct: 1   MRIDKITLTNFLSHEHSEIHFLGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS         +        I I  + R     R ++    V R    ++  +    
Sbjct: 60  IRKGSN---KASVTLHLSNEKDKIEIIRDIRSTTEDRLIRNQIPVARSATVVSNEIEKIL 116

Query: 125 LVPSMDRI 132
            +     +
Sbjct: 117 GIDKDIAL 124



 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 253 DGRKMDSMSRRTL-IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
              +M+ M + +   G   + +I       + I   S GE+  + + + LA A+ + + T
Sbjct: 739 KNVEMEIMPKTSRGKGSGGNIVIYTNNGDTLPIVSLSGGERIALSIALRLAIAKALMSNT 798

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357
                 +LDE + HLD+ ++  L  I+        QI +   D+ V  +
Sbjct: 799 N---FFILDEPTIHLDDQRKAYLIEIIRAAKESVPQILVVTHDEEVVQA 844


>gi|227829083|ref|YP_002830862.1| Rad50 zinc hook domain protein [Sulfolobus islandicus L.S.2.15]
 gi|284996470|ref|YP_003418237.1| Rad50 zinc hook [Sulfolobus islandicus L.D.8.5]
 gi|227455530|gb|ACP34217.1| Rad50 zinc hook domain protein [Sulfolobus islandicus L.S.2.15]
 gi|284444365|gb|ADB85867.1| Rad50 zinc hook [Sulfolobus islandicus L.D.8.5]
          Length = 864

 Score = 66.5 bits (161), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  + ++ F ++    + F  +  + VG NG GK++I++ I   S  R   R +  ++
Sbjct: 1   MRIDKITLTNFLSHEHSEIHFLGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS         +        I I  + R     R ++    V R    ++  +    
Sbjct: 60  IRKGSN---KASVTLHLSNEKDKIEIIRDIRSTTEDRLIRNQIPVARSATVVSNEIEKIL 116

Query: 125 LVPSMDRI 132
            +     +
Sbjct: 117 GIDKDIAL 124



 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 253 DGRKMDSMSRRTL-IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
              +M+ M + +   G   + +I       + I   S GE+  + + + LA A+ + + T
Sbjct: 739 KNVEMEIMPKTSRGKGSGGNIVIYTNNGDTLPIVSLSGGERIALSIALRLAIAKALMSNT 798

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357
                 +LDE + HLD+ ++  L  I+        QI +   D+ V  +
Sbjct: 799 N---FFILDEPTIHLDDQRKAYLIEIIRAAKESVPQILVVTHDEEVVQA 844


>gi|333024186|ref|ZP_08452250.1| putative chromosome segregation protein [Streptomyces sp. Tu6071]
 gi|332744038|gb|EGJ74479.1| putative chromosome segregation protein [Streptomyces sp. Tu6071]
          Length = 1287

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 94/273 (34%), Gaps = 29/273 (10%)

Query: 11  NISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYADVTR 66
            +  F+++AS   L F+   T  VG NG GK+N+++A++++      +  R     DV  
Sbjct: 2   TLRGFKSFASATTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKSLRGGKMEDVIF 61

Query: 67  IGSP-----SFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIRVVDE-- 115
            G+              ++  +G   I         T         QIN    R++D   
Sbjct: 62  AGTTGRPPLGRAEVSLTIDNSDGALPIEYAEVTIARTMFRNGGSEYQINGDTCRLLDIQE 121

Query: 116 ------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                 + + + +      +D +     M RR F++     +  R        E+ +R  
Sbjct: 122 LLSDSGIGREMHVIVGQGQLDSVLHADPMGRRAFIEEASGVLKHR-----KRKEKALRKL 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY-VQKENFPHIKLSL 228
           + +             +  Q+  LG +  +AR      + + + +  ++  +   + L  
Sbjct: 177 DAMRANLARVQDLTDELRRQLKPLGRQAAVARRA--AVIQADLRDARLRLLSDDLVTLRR 234

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
               +   + +  A KE     L      ++  
Sbjct: 235 ALDAEVADEAALKARKEAAESALKTALAREARL 267


>gi|225571977|ref|ZP_03780841.1| hypothetical protein RUMHYD_00271 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040510|gb|EEG50756.1| hypothetical protein RUMHYD_00271 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1186

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 119/329 (36%), Gaps = 49/329 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++A  +   F    T  VG NG GK+N+ +A+ ++      +  R  +
Sbjct: 1   MYLKNIEVYGFKSFAQKINFEFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGGN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQI-NDVVIR 111
             DV   G+      S+ S    ++  +    +    + +  R  RS     + N    R
Sbjct: 61  MQDVIFSGTENRKPLSYASVSITLDNGDRKLPVDYKEVTVTRRLYRSGESEYLMNGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+     +
Sbjct: 121 LKDIQELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKN-TTLK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMI------------N 206
           +L   +  L+      +   S ++ Q+  L       KI + +   +             
Sbjct: 180 KLEEEKQNLVRV----TDILSELDRQLGPLERQSETAKIYLEQKSRLKEKEAGLFLLEME 235

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA------KKLFDGRKMDSM 260
            +   + E  QK++    +L  T    G+  + +  L+++        +++ +  + D++
Sbjct: 236 EIDEQLQEKKQKKSLTEEQLQKTQESYGQVKEEYEELEQKLQKLNTRIEQIREETQQDAL 295

Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGST 289
            R+ L G         +  K     + S 
Sbjct: 296 RRQQLEGQVEVLKEQIHGAKQNEEHYKSR 324


>gi|323473551|gb|ADX84157.1| recombination repair enzyme Rad50 like protein [Sulfolobus
           islandicus REY15A]
          Length = 864

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  + ++ F ++    + F  +  + VG NG GK++I++ I   S  R   R +  ++
Sbjct: 1   MRIDKITLTNFLSHEHSEIHFLGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS         +        I I  + R     R ++    V R    ++  +    
Sbjct: 60  IRKGSN---KASVTLHLSNEKDKIEIIRDIRSTTEDRLIRNQIPVARSATVVSNEIEKIL 116

Query: 125 LVPSMDRI 132
            +     +
Sbjct: 117 GIDKDIAL 124



 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 253 DGRKMDSMSRRTL-IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
              +M+ M + +   G   + +I       + I   S GE+  + + + LA A+ + + T
Sbjct: 739 KNVEMEIMPKTSRGKGSGGNIVIYTNNGDTLPIVSLSGGERIALSIALRLAIAKALMSNT 798

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357
                 +LDE + HLD+ ++  L  I+        QI +   D+ V  +
Sbjct: 799 N---FFILDEPTIHLDDQRKAYLIEIIRAAKESVPQILVVTHDEEVVQA 844


>gi|310639249|ref|YP_003944008.1| SMC domain-containing protein [Ketogulonicigenium vulgare Y25]
 gi|308752825|gb|ADO43969.1| SMC domain-containing protein [Ketogulonicigenium vulgare Y25]
          Length = 423

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 123/369 (33%), Gaps = 63/369 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA--ISFLSPGRGFRRASYA 62
           +KI+ L+++  R +      FD   T+ VG NGVGK+++LEA  +S       F  +   
Sbjct: 1   MKIRRLSVAGLRGFDQATFEFDPHFTLLVGVNGVGKSSVLEALRVSLSRVLPKFTASRST 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-VVDELNKHLR 121
            +           FA  +  +  A +++ L+       R L ++    R V DE      
Sbjct: 61  PL----------AFAADDIRQVSASLTVDLDLEFPEGQRNLLLHKPRERFVPDEEGSVRN 110

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF---ERLMRGRNRLLTEGYF 178
            +   P  + +         +  D         +          E++  GR+R       
Sbjct: 111 ATLDTPEREEL---SPPHWPK-ADPSGNQPIAIYFGTRRSHPTDEQIKIGRSRG------ 160

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSL-IMEYVQKENFPHIKLSLTGFLDGKFD 237
                     Q A     ++  R   +  ++S  + +    E  P  +  L         
Sbjct: 161 ---------GQAAAFADALSDVRPLHLRDMASWMVAQEALAEELPRARFHLEALKS---- 207

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                            R + +    R   G  +  L++      + + + S GE+ V+ 
Sbjct: 208 --------------AAARFLPTCKGLRATNGADKPRLLISKDGIELDVRYLSEGERGVLA 253

Query: 297 VGI----FLAHAR-LISNTTGF-APILLLDEISAHLDEDKRNALFRIVTD--IGSQIFMT 348
           + +     L+ A   + +  G    ++L+DEI  H+    +  +  ++T+     Q   T
Sbjct: 254 LALDLARRLSQANPALDDPIGDGVGVVLIDEIDMHMHPLWQRQIVSLLTETFCSCQFIAT 313

Query: 349 GTDKSVFDS 357
                V   
Sbjct: 314 THSPQVIGE 322


>gi|227432060|ref|ZP_03914074.1| SMC structural maintenance of chromosomes partitioning protein
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227352177|gb|EEJ42389.1| SMC structural maintenance of chromosomes partitioning protein
           [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 1185

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 116/320 (36%), Gaps = 42/320 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+K L IS F+++A    +      T  +G NG GK+NI+EAI ++   +     R   
Sbjct: 1   MKLKSLEISGFKSFADKTMIELMPGMTGIIGPNGSGKSNIIEAIQWVMGEQSAKDLRGTK 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
            +DV   G+        A V      +D  ++ +  + R  R L         IN V  R
Sbjct: 61  MSDVIFGGTDKRGALNRAEVSITFDNSDHYVQSDFNEIRITRKLYRSGESSYLINGVESR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    +RR  ++ +       +++     +
Sbjct: 121 LRDIHELFMDTGLGRESFSIISQGRVESIFNAKPEDRRGIIEEVAGVYK--YKQNKEKAQ 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK-------------INIARVEM-INALS 209
           + +   +  L+          S    +AE   +             ++ AR+   I+ L+
Sbjct: 179 KELTQTSDNLSRVADIIHEIESRIDLLAEQAAEATDYLAQKERFDTLDKARLAWSIHDLN 238

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
             I    ++      +++ T       D     L ++  +++      DS+  + L    
Sbjct: 239 GQISSTTKQVETHDKRVNQTKL---ALDIVNKKLLDKRQERVSSQLSRDSLQAKILECTQ 295

Query: 270 RSDLIVDYCDKAITIAHGST 289
           + + ++    K +     ST
Sbjct: 296 KRERLI--GAKNLGAQQIST 313


>gi|169834374|ref|YP_001694677.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           Hungary19A-6]
 gi|168996876|gb|ACA37488.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 1179

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENACKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|18312382|ref|NP_559049.1| partial recF-like protein [Pyrobaculum aerophilum str. IM2]
 gi|18159834|gb|AAL63231.1| partial recF homolog [Pyrobaculum aerophilum str. IM2]
          Length = 91

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          + L I  F++   L L       + VG N  GKTNILEAI 
Sbjct: 8  ETLLIENFKSIRRLELKLRPGVNLLVGPNASGKTNILEAIY 48


>gi|294785833|ref|ZP_06751121.1| exonuclease SBCC [Fusobacterium sp. 3_1_27]
 gi|294487547|gb|EFG34909.1| exonuclease SBCC [Fusobacterium sp. 3_1_27]
          Length = 921

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 17/170 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--A 62
           + IK + +  +R++++  + F     + +G NG GKT+ILEAIS +      R       
Sbjct: 1   MIIKKVQLENYRSHSNTTVEFTKGVNLILGKNGRGKTSILEAISTVMFNTKDRSGKETGK 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQI----NDVVIRVVDELN 117
              + G  S       +       ++  +  +T+  +      I    +  +   ++EL 
Sbjct: 61  SYIKFGEKSSKVDIDFIANDGREYNLKTEFFKTKPKKQTLKDMIGSEYDGDIQEKLEELC 120

Query: 118 KHLR---------ISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRR 157
              +         +         IF      R +  +++    I  +   
Sbjct: 121 GIKKGFEETYENIVIAKQNEFINIFKDSGTTREKTFNKIFNTQIYKKMYD 170


>gi|322376802|ref|ZP_08051295.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. M334]
 gi|321282609|gb|EFX59616.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. M334]
          Length = 1179

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNNDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLTSYYQKREKLEEE-NQTLKKQRQ 277


>gi|325277138|ref|ZP_08142784.1| hypothetical protein G1E_26248 [Pseudomonas sp. TJI-51]
 gi|324097715|gb|EGB95915.1| hypothetical protein G1E_26248 [Pseudomonas sp. TJI-51]
          Length = 575

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 119/386 (30%), Gaps = 78/386 (20%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I+ L IS FR+  +L  V        +G    GK++IL+AI      R  R  ++ D+ 
Sbjct: 3   RIRRLQISNFRSIQALDWVPAPGINCLIGPGDSGKSSILDAIDLCVGAR--RGGTFGDM- 59

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                 FF+    V     +A   + L   D                +D   + LR    
Sbjct: 60  -----DFFALNVDVPITISVALGDLPLSLMD----------------IDVYGEFLR--GF 96

Query: 126 VPSMDRIFSGLSMERRRFLDRMV---FAIDPRH-----RRRMIDFERLM--RGRNRLLT- 174
            P    +           +   +     ++P       R      ER +  + R  L   
Sbjct: 97  HPGTGEVEDEPRAGLETVITLRLQVGADLEPVWTLFSERAEQQQLERTLPWKERAALAPA 156

Query: 175 ----EGYFDSSW-----CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
                   + SW      + +  + AELG ++  A  +      +   E           
Sbjct: 157 RIGSFASSNLSWSRGSVLNRLTDERAELGAELARAARQARANFGNQAAE----------H 206

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           L+ T  +  +  Q          + L D   +        +          + +  I + 
Sbjct: 207 LTQTLEVVQRTAQHLGVSVGAMPQALLDAHSVSIGEGAIAL----------HSETGIPLR 256

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343
              TG  ++++ G+              API L+DE+   L+  +       +    +  
Sbjct: 257 SLGTGSSRLLVAGLQ-------RAAASAAPIALVDEVEYGLEPHRLMRFLDSLGAKDAAA 309

Query: 344 --QIFMTGTDKSVFDSLNETAKFMRI 367
             Q+FMT         L+  ++   +
Sbjct: 310 PLQVFMTTHSPVALRELSG-SQLFVV 334


>gi|212224573|ref|YP_002307809.1| chromosome segregation protein [Thermococcus onnurineus NA1]
 gi|212009530|gb|ACJ16912.1| DNA double-strand break repair ATPase [Thermococcus onnurineus NA1]
          Length = 884

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 99/269 (36%), Gaps = 33/269 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--- 61
           +KI+ L I +FR++   ++ F +   + +G NG GK+++L+A+          +      
Sbjct: 1   MKIEKLIIKDFRSHKLTKVTFTSGINLIIGQNGSGKSSLLDALLIGLYWPS--KPKDLKK 58

Query: 62  ADVTRI-GSPSFFSTFARVEGMEGLADISIK-----LETRDDRSVRCLQINDVVIR---- 111
            D  RI G+ +  + F   +G++     +I      ++  D  S R L+     +R    
Sbjct: 59  DDFLRIGGTTTEITVFFEKDGVKYQIHRNITRGLSFVKYHDGSSWRGLESGQKQVRDWME 118

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            +   +  L   ++              R + + +++             ++ L+  R  
Sbjct: 119 KLVPYDVFLNAIYIRQGEIDAILESDESREKVVRQVLGLDRYE-----NAYKNLLEVRKE 173

Query: 172 LLTEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
           +         +  S E   ++     K     +++IN LS  I + +++      +L   
Sbjct: 174 IDARIRAIEDYLKSTENIDELIGNMEKELAETLKVINELSPEIPKLIKELEGVEKRL--- 230

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
                   +   AL EE      + RK +
Sbjct: 231 --------RDLDALAEEINALQLETRKRE 251



 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 8/139 (5%)

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-HRSDLIVDYCDKAITIAHGSTGEQKV 294
             +   A   E A ++F+    +  S  T+    ++  L V Y  K   +   S GE+  
Sbjct: 739 LKEGALAKVGELASEIFEELTEEKYSGVTVKAEENKVKLGVIYNGKEYGLGFLSGGERIA 798

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---DIGSQIFMTGTD 351
           + +   LA +  ++   G   +L+LDE + +LD+++R  L  I+        Q+ +   D
Sbjct: 799 LGLAFRLALSLYLA---GEISLLILDEPTPYLDDERRRRLVDIMQRYLRKIPQVIVVSHD 855

Query: 352 KSVFDSLNETAKFMRISNH 370
           + + D+  +    + + N 
Sbjct: 856 EELKDA-ADRVIRVSLENG 873


>gi|299821774|ref|ZP_07053662.1| cell division protein Smc [Listeria grayi DSM 20601]
 gi|299817439|gb|EFI84675.1| cell division protein Smc [Listeria grayi DSM 20601]
          Length = 1185

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 110/326 (33%), Gaps = 64/326 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MLLKKLEMNGFKSFADKVTVDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   GS S     F      +E  +    +    I +  R          IN    R
Sbjct: 61  MGDVIFAGSDSRKPINFAEVSLVLENEDHFLPLDYSEIAITRRIYRNGDSEFLINHEQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          +D I +    ERR   +             ++ ++
Sbjct: 121 LKDIVELFMDSGLGRESFSIISQGKIDEILNSKPEERRTIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
           +  +   + LTE   +          +E Q+  L              + + I +    Q
Sbjct: 172 QRKKQAEQKLTETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLFDGRK--MDSMSRRTLIGPHRSD 272
           KE     ++SL     G  +      ++++A   + LF  R+   +     T        
Sbjct: 219 KEELEKYEVSLLATEIGGLETKLEKERDDFAANSQALFKLREKIREEEQHVT-----EQK 273

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVG 298
             +   D+ I        +QK++ + 
Sbjct: 274 RSLTELDEKIDAN-----QQKLLQLA 294


>gi|149007090|ref|ZP_01830759.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           SP18-BS74]
 gi|307127163|ref|YP_003879194.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           670-6B]
 gi|147761394|gb|EDK68360.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           SP18-BS74]
 gi|306484225|gb|ADM91094.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           670-6B]
          Length = 1179

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|160880575|ref|YP_001559543.1| chromosome segregation protein SMC [Clostridium phytofermentans
           ISDg]
 gi|160429241|gb|ABX42804.1| chromosome segregation protein SMC [Clostridium phytofermentans
           ISDg]
          Length = 1185

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 32/230 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  R A+
Sbjct: 1   MYLKSIEVHGFKSFANKITFQFKNGITGIVGPNGSGKSNVADAVRWVLGEQSAKSLRGAN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+       F      ++  +    I  +  T   R  R       IN    R
Sbjct: 61  MQDVIFSGTQMRKSLGFAYVAITLDNSDHKLPIEYEEVTVSRRVYRSGESEYMINGTNCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +            
Sbjct: 121 LRDVQELFMDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVK-------FKKR 173

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELG--VKINIARVEMINALS 209
           + +  R+               S IE Q+  L    ++    + +   L 
Sbjct: 174 KALAERDLEAERLNLSRVSDIISEIERQIGPLAKQSEVAKEYLRLKEQLK 223


>gi|194398150|ref|YP_002037847.1| chromosome segregation protein smc [Streptococcus pneumoniae G54]
 gi|194357817|gb|ACF56265.1| chromosome segregation protein smc, putative [Streptococcus
           pneumoniae G54]
          Length = 1179

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|148998679|ref|ZP_01826118.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP11-BS70]
 gi|168491167|ref|ZP_02715310.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC0288-04]
 gi|168575702|ref|ZP_02721617.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           MLV-016]
 gi|307067895|ref|YP_003876861.1| chromosome segregation ATPase [Streptococcus pneumoniae AP200]
 gi|147755516|gb|EDK62564.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP11-BS70]
 gi|183574446|gb|EDT94974.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC0288-04]
 gi|183578276|gb|EDT98804.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           MLV-016]
 gi|306409432|gb|ADM84859.1| Chromosome segregation ATPase [Streptococcus pneumoniae AP200]
          Length = 1179

 Score = 66.1 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|15922327|ref|NP_377996.1| hypothetical protein ST2010 [Sulfolobus tokodaii str. 7]
 gi|15623116|dbj|BAB67105.1| 382aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 382

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 11/111 (9%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
            + IK L I  F++Y      F  +  + VG NG GKTN+++A SFL             
Sbjct: 14  HM-IKRLAIKNFKSYRDAEFEFG-KVNVVVGPNGSGKTNLVDAFSFLKQLIRPLSYPPYP 71

Query: 64  VTRIG--------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
             R G                  + G     D   ++    +  ++   IN
Sbjct: 72  FIRWGDYKNVIFMQDENLDISFEINGTYKSKDYHYEVSLN-NLQIKKEIIN 121


>gi|326789905|ref|YP_004307726.1| hypothetical protein Clole_0795 [Clostridium lentocellum DSM 5427]
 gi|326540669|gb|ADZ82528.1| hypothetical protein Clole_0795 [Clostridium lentocellum DSM 5427]
          Length = 540

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 39/126 (30%), Gaps = 8/126 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK L I  F     L     A   +  G    GKT+ILEAI         R    ++V
Sbjct: 1   MKIKRLEIKNFIGVKELNWSPKAGVNVLKGRKAEGKTSILEAIEKAFTNFSRR----SEV 56

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G           EG+E    I  +             IN        EL K +    
Sbjct: 57  VRHGEDEATLYVETDEGLEIDRRIRTEKSDYMKLRQEGKAINSTE----SELRKLISGDI 112

Query: 125 LVPSMD 130
             P   
Sbjct: 113 FRPLDF 118


>gi|296111746|ref|YP_003622128.1| cell division protein Smc [Leuconostoc kimchii IMSNU 11154]
 gi|295833278|gb|ADG41159.1| cell division protein Smc [Leuconostoc kimchii IMSNU 11154]
          Length = 1184

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 102/279 (36%), Gaps = 27/279 (9%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+K L IS F+++A    + F    T  VG NG GK+NI+EAI ++   +     R   
Sbjct: 1   MKLKSLEISGFKSFADKTVIEFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKDLRGTK 60

Query: 61  YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
            AD+   G S       + V      +D  +K E  + R  R L        QIN V  R
Sbjct: 61  MADIIFGGTSKRGALNRSEVSMTFDNSDHYVKSEFNEIRITRRLYRSGESVYQINGVDSR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
            + ++++    + L      I S             +RR  ++ +       +++     
Sbjct: 121 -LRDIHELFMDTGLGRESFSIISQGRVEGIFNAKPEDRRGIIEEVAGVYK--YKQNKERA 177

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN--IARVEMINALSSLIMEYVQKEN 220
           ++ +   +  L                +AE   +    +A+ E  N L    +    +E 
Sbjct: 178 QKELSQTSDNLARVADIIYEIKGRIQPLAEQSAQATDYLAQKERFNTLDKTRLALTHREL 237

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
              IK ++T         +   +  +   KL   ++ + 
Sbjct: 238 EIQIKTTITEVEVHDKRVNQTKVGLDKLNKLLSEKRQER 276


>gi|20090982|ref|NP_617057.1| hypothetical protein MA2139 [Methanosarcina acetivorans C2A]
 gi|19916068|gb|AAM05537.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 689

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 68/393 (17%), Positives = 137/393 (34%), Gaps = 62/393 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS-PGRGFRRASY-- 61
           + I  + +  FR +    + F     +F+G+N  GKT +L+A+  +       + +    
Sbjct: 12  MYISKIRMQNFRCFCDTSVEFYEGLNVFIGENNSGKTTVLKALQLIFDNSVSKKLSIDDF 71

Query: 62  -ADVTRIGSPSFFSTFARVEGMEG--------------------LADISIKLETRD-DRS 99
              ++    P   +    ++  E                      A ++ K    + D  
Sbjct: 72  YKGISSFDEPPQITITISIQETESEKIEDKAVVATWLTKLNSPCEATLTYKYFLPETDLE 131

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
               ++N+    ++ E +   R  +L   + RI++G  + + R     +   D      +
Sbjct: 132 EYKKELNERDQSLISEWDILER--FLQRYVSRIYAGNPISKNRVESEYLEKFDCTFLDAL 189

Query: 160 IDF-ERLMRGRNRLLTE------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
            +    +  G+N LL         Y   S    +E  + +   K      E +  L    
Sbjct: 190 RNVENSIYNGKNSLLKNVLNYFLDYNLKSSIKKLEQDLEDTDSK--AKLDECLTKLECCR 247

Query: 213 MEY--VQKENFPHIKLSLTGFLDGKFDQSFCAL---KEEYAKKLFDGRKMDSMSRRTLIG 267
            E+    K+    I+  L         +S  A    K +   +L +    D +S   LI 
Sbjct: 248 NEFRGQSKDLLDSIRGRLDTGHILSLVESTGASVCGKPDIEGELSES---DILSTLKLII 304

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFA----PILLLDEI 322
              S + +   +  +       G   ++ + + L++  +I S+  G      PILL++E 
Sbjct: 305 KSNSGMQIPIFNNGL-------GYNNLIYISLVLSNLEIITSDHFGENAKIFPILLIEEP 357

Query: 323 SAHLDEDKRNALFRIVTD------IGSQIFMTG 349
            AHL    +    R + +      I  QIF+T 
Sbjct: 358 EAHLHPALQYNFLRFLKEEIKNKNISRQIFVTT 390


>gi|86607139|ref|YP_475902.1| RecF/RecN/SMC domain-containing protein [Synechococcus sp.
          JA-3-3Ab]
 gi|86555681|gb|ABD00639.1| RecF/RecN/SMC N terminal domain protein [Synechococcus sp.
          JA-3-3Ab]
          Length = 1198

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I  L +  F+++      F+       G+NG GKT+ILEAI+++     +   +  ++
Sbjct: 1  MRILSLALQNFKSHEDAFFEFEPGINAICGENGAGKTSILEAIAWVLF--DYCPYNQEEL 58

Query: 65 TRIGSPSFFSTFARVEGMEGL 85
           R G+    +T   +   +  
Sbjct: 59 IRTGASDAVATVQFISQWDQR 79


>gi|332666578|ref|YP_004449366.1| SMC domain-containing protein [Haliscomenobacter hydrossis DSM
          1100]
 gi|332335392|gb|AEE52493.1| SMC domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 706

 Score = 66.1 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          + I  L++  FRN+   +  F       +G+NG GKTN+
Sbjct: 1  MHITSLSLRNFRNFKKAKFHFQKGINTLIGENGSGKTNV 39


>gi|323476197|gb|ADX81435.1| Rad50 recombination repair enzyme like protein [Sulfolobus
           islandicus HVE10/4]
          Length = 864

 Score = 66.1 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  + ++ F ++    + F  +  + VG NG GK++I++ I   S  R   R +  ++
Sbjct: 1   MRIDKITLTNFLSHEQSEIHFLGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS         +        I I  + R     R ++    V R    ++  +    
Sbjct: 60  IRKGSN---KASVTLHLSNEKDKIEIIRDIRSTTEDRLIRNQIPVARSATVVSNEIEKIL 116

Query: 125 LVPSMDRI 132
            +     +
Sbjct: 117 GIDKDIAL 124



 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)

Query: 253 DGRKMDSMSRRTL-IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
              +M+ M + +   G   + +I       + I   S GE+  + + + LA A+ + + T
Sbjct: 739 KNVEMEIMPKTSRGKGTGGNIVIYTNNGDTLPIVSLSGGERIALSIALRLAIAKALMSNT 798

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357
                 +LDE + HLD+ ++  L  I+        QI +   D+ V  +
Sbjct: 799 N---FFILDEPTIHLDDQRKAYLIEIIRAAKESVPQILVVTHDEEVVQA 844


>gi|260438583|ref|ZP_05792399.1| putative ATP binding protein [Butyrivibrio crossotus DSM 2876]
 gi|292809174|gb|EFF68379.1| putative ATP binding protein [Butyrivibrio crossotus DSM 2876]
          Length = 438

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +K+K + I  +R +    + FD   T+ VG NG GKT IL+A++ 
Sbjct: 1  MKLKNIKIENYRCFKRADIDFDENITLIVGKNGAGKTAILDAVAV 45


>gi|229918602|ref|YP_002887248.1| chromosome segregation protein SMC [Exiguobacterium sp. AT1b]
 gi|229470031|gb|ACQ71803.1| chromosome segregation protein SMC [Exiguobacterium sp. AT1b]
          Length = 1185

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 35/221 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + ++ F+++   + L F    T  VG NG GK+NI +A+ ++      +  R A 
Sbjct: 1   MHLKRIELAGFKSFAKRIELDFRPGVTAVVGPNGSGKSNISDAVRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS      +       ++  +    +  +  +   R  R       +N    R
Sbjct: 61  MEDVIFAGSEGENHRNVAEVTLVLDNRDEQLRLPYEEVSVTRRVTRSGDSDYFMNKKPCR 120

Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D ++  +       +         +++ SG   ERR  ++             ++ + 
Sbjct: 121 LKDVIDLFMDTGLSRDAFAIIGQGRVEQVISGKPEERRAVIEE---------AAGVLKY- 170

Query: 164 RLMRGRNRLLTEGYFDSSW-CSSIEAQMAELGVKINIARVE 203
              R R +       D+    S ++  + EL  ++   R +
Sbjct: 171 ---RQRKKQAERKLQDTELNLSRVDDILFELADRVEPLREQ 208


>gi|168486567|ref|ZP_02711075.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC1087-00]
 gi|183570412|gb|EDT90940.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC1087-00]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|148985142|ref|ZP_01818381.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922587|gb|EDK73705.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP3-BS71]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDIFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|296109493|ref|YP_003616442.1| SMC domain protein [Methanocaldococcus infernus ME]
 gi|295434307|gb|ADG13478.1| SMC domain protein [Methanocaldococcus infernus ME]
          Length = 873

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ L I  FR++ S  L F     + VG NG GK++ILEAI         R     D 
Sbjct: 1   MKIEELKIINFRSHKSSVLEFTDGINLIVGPNGSGKSSILEAILVGLYWDKPRN-KIKDF 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
            R G        A +E    L + S KL     R+   L+ +D  +   D
Sbjct: 60  HRDGKK------AEIEMKLKLNNRSCKLLRSFPRNTAYLRYSDSYLNERD 103



 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 86/226 (38%), Gaps = 30/226 (13%)

Query: 151 IDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI--NIARVEMI 205
           ++ +      ++ R     +  N  L E   D         ++++   +I      +E +
Sbjct: 659 LENKFLELEREYSRKDEEFKQLNSQLEEIIKDLDNLKRDLDEISKYREEIKSLEKALEFV 718

Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
             L   + E+  K         L      K  +    + EE  ++ + G       +   
Sbjct: 719 EELRKKVKEFKNK---------LKCHAFQKVSEIASEIFEELTEEKYSGVA--IKEKGNK 767

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           +  +     + Y  K   +   S GE+  + +   LA +  ++   G  P+L++DE + +
Sbjct: 768 LIVN-----IIYEGKERNLNFLSGGEKVALGLAFRLALSLYLA---GNIPLLIMDEPTPY 819

Query: 326 LDEDKRNALFRIVT---DIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
           LDE++R  L  I+        Q+ +   D+ + D+ +   + +R+S
Sbjct: 820 LDEERRRRLVDIIERYLKRIPQVIIVSHDEELKDAAD---RVIRVS 862


>gi|227548996|ref|ZP_03979045.1| possible chromosome segregation protein Smc [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078947|gb|EEI16910.1| possible chromosome segregation protein Smc [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 636

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/227 (17%), Positives = 76/227 (33%), Gaps = 31/227 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   + F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLKSLTLKGFKSFASATTMKFEPGICAVVGPNGSGKSNVVDALAWVMGEQGVKNLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+               +  +    I         R  R      ++N    R
Sbjct: 61  MEDVIFAGAGERKPLGRAEVTLTFDNTDKRLPIDYTDVAITRRMFRDGASEYEVNGSKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + I      +  I      ERR F++     +  R        E
Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLAEILESRPEERRAFIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKI-NIARVEMINA 207
           +    R     +   D        +  Q+A L  +     R   + A
Sbjct: 176 KA--QRKLTGMQANLDRLTDLTEELGKQLAPLARQAETAQRAASVQA 220


>gi|325295627|ref|YP_004282141.1| chromosome segregation protein SMC [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066075|gb|ADY74082.1| chromosome segregation protein SMC [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 1168

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 22/162 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + IK L +  F+++A    + F       VG NG GK+NI++A+ ++   +  +G R ++
Sbjct: 1   MFIKSLKLKGFKSFADETEIRFSKGINCIVGPNGCGKSNIVDALKWIVGDTSIKGMRASN 60

Query: 61  YADVTRIGSP-------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRV 112
             DV   GS        +  S     + +   ++  ++L+ R   +      IN+  +R 
Sbjct: 61  IKDVIFKGSEGRRAARSAEVSITLIKDDLFTFSESEVELKRRIKSTGDSEFLINNRKVR- 119

Query: 113 VDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLD 145
           + ++ +      L             DR+      ERR  +D
Sbjct: 120 LKDIQEFFASIGLGNRDYAFFEQGQIDRVLKMKPQERRLLID 161


>gi|301800167|emb|CBW32772.1| putative chromosome partition protein [Streptococcus pneumoniae
           OXC141]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|257051458|ref|YP_003129291.1| chromosome segregation protein [Halorhabdus utahensis DSM 12940]
 gi|256690221|gb|ACV10558.1| SMC domain protein [Halorhabdus utahensis DSM 12940]
          Length = 890

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 118/307 (38%), Gaps = 41/307 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ + + +  F+ YA   L  +   T+F G NG GK+++LEA  F   G      +  ++
Sbjct: 1   MRFERVRLEHFKCYADADLRLERGVTVFHGVNGSGKSSLLEACFFALYGARALDRTLDEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLA---------DISIKLETRDDRSVRCLQINDVVIRVVDE 115
             IG+           G E            D +  +E   D S   ++    V   V  
Sbjct: 61  VTIGAEEATVELWFAHGGESYHIKRRVRVRDDRATTVECVLDESDGVVEGARDVRERVAS 120

Query: 116 LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFE----R 164
           L +    +++  +  R      + +    ER+  +D ++       +R+R  D      R
Sbjct: 121 LLRMDHEAFVNCAYVRQGEVNKLINATPGERQDMIDDLLQLGRLEDYRKRASDARVGVGR 180

Query: 165 LMRGRNRLL----------------TEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           ++ G+   L                 +     S  +++  ++     +   AR E ++A 
Sbjct: 181 VLEGKRESLSQLESQIEAKVEKELHEQLNAAESELATVREELERYDEQRETAR-ETLDAA 239

Query: 209 SSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR-KMDSMSRRTLI 266
           +S++ EY Q +E    I+  +    +    ++    +EE A ++ D R + + +S R   
Sbjct: 240 NSILEEYEQRREELDEIESEIAELTETI--EATEREREELADEISDRRDRREEISDRIES 297

Query: 267 GPHRSDL 273
           G   ++L
Sbjct: 298 GLDTAEL 304


>gi|311246142|ref|XP_003122098.1| PREDICTED: structural maintenance of chromosomes protein 2-like
           [Sus scrofa]
          Length = 570

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/274 (17%), Positives = 99/274 (36%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+  H
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSH 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +   ++S   LKE   K L    +
Sbjct: 233 LYIAYQFLLAEDTKERSAEELKEMQDKILKLQEE 266


>gi|144898157|emb|CAM75021.1| Recombinational DNA repair ATPase (RecF [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 71

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 36/53 (67%)

Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
           DE+ AHLDE +R ALF  +  + +Q +MTGTD+S+F  L + A+F R+++   
Sbjct: 15  DEVVAHLDETRRLALFDELAGLNAQSWMTGTDESMFAGLGDRAQFFRVADASV 67


>gi|332074857|gb|EGI85329.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA41301]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|225854712|ref|YP_002736224.1| chromosome segregation protein SMC [Streptococcus pneumoniae JJA]
 gi|225722373|gb|ACO18226.1| chromosome segregation protein SMC [Streptococcus pneumoniae JJA]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|182684026|ref|YP_001835773.1| hypothetical protein SPCG_1056 [Streptococcus pneumoniae CGSP14]
 gi|303254258|ref|ZP_07340367.1| hypothetical protein CGSSpBS455_02192 [Streptococcus pneumoniae
           BS455]
 gi|303258882|ref|ZP_07344861.1| hypothetical protein CGSSp9vBS293_10438 [Streptococcus pneumoniae
           SP-BS293]
 gi|303261565|ref|ZP_07347512.1| hypothetical protein CGSSp14BS292_04130 [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264236|ref|ZP_07350156.1| hypothetical protein CGSSpBS397_09985 [Streptococcus pneumoniae
           BS397]
 gi|303266133|ref|ZP_07352026.1| hypothetical protein CGSSpBS457_05117 [Streptococcus pneumoniae
           BS457]
 gi|303268140|ref|ZP_07353940.1| hypothetical protein CGSSpBS458_01192 [Streptococcus pneumoniae
           BS458]
 gi|182629360|gb|ACB90308.1| hypothetical protein SPCG_1056 [Streptococcus pneumoniae CGSP14]
 gi|301801898|emb|CBW34622.1| putative chromosome partition protein [Streptococcus pneumoniae
           INV200]
 gi|302598752|gb|EFL65789.1| hypothetical protein CGSSpBS455_02192 [Streptococcus pneumoniae
           BS455]
 gi|302637145|gb|EFL67633.1| hypothetical protein CGSSp14BS292_04130 [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639825|gb|EFL70281.1| hypothetical protein CGSSpBS293_10438 [Streptococcus pneumoniae
           SP-BS293]
 gi|302642357|gb|EFL72704.1| hypothetical protein CGSSpBS458_01192 [Streptococcus pneumoniae
           BS458]
 gi|302644303|gb|EFL74557.1| hypothetical protein CGSSpBS457_05117 [Streptococcus pneumoniae
           BS457]
 gi|302646048|gb|EFL76275.1| hypothetical protein CGSSpBS397_09985 [Streptococcus pneumoniae
           BS397]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|15903169|ref|NP_358719.1| chromosome condensation and segregation SMC protein [Streptococcus
           pneumoniae R6]
 gi|116515906|ref|YP_816575.1| chromosome segregation protein SMC [Streptococcus pneumoniae D39]
 gi|15458753|gb|AAK99929.1| chromosome condensation and segregation SMC protein [Streptococcus
           pneumoniae R6]
 gi|116076482|gb|ABJ54202.1| chromosome segregation protein SMC [Streptococcus pneumoniae D39]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 107/283 (37%), Gaps = 37/283 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR----------VEMINALSSLIM 213
             ++     L            ++ Q+  L  +   AR          V  ++ L + I 
Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLEKQAENARKFLDLEGQRKVIYLDVLVAQIK 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           E   +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 236 ENKAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|51892593|ref|YP_075284.1| putative chromosome segregation SMC protein [Symbiobacterium
           thermophilum IAM 14863]
 gi|51856282|dbj|BAD40440.1| putative chromosome segregation SMC protein [Symbiobacterium
           thermophilum IAM 14863]
          Length = 1193

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 101/306 (33%), Gaps = 51/306 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L I  F+++A    L F    T  VG NG GK+N+ +AI ++      R  R  S
Sbjct: 1   MYLKRLEILGFKSFAEKTELEFTPGITAVVGPNGSGKSNVSDAIRWVLGEQSARALRGGS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
            ADV   GS       F      ++  +G   +    + +  R DRS      IN V  R
Sbjct: 61  MADVIFAGSDGKRAMGFAEVSLVLDNSDGALPLDFTEVMITRRVDRSGEGEYFINQVPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D I S    +RR   +        R++ R  + +
Sbjct: 121 LKDVQELFMDTGIGKENYSIIGQGRIDEILSSKPEDRRALFEEAAG--ISRYKARKREAQ 178

Query: 164 RLMRG-----------------RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI- 205
           R +                       L +    ++    ++ ++  L V +   +++ + 
Sbjct: 179 RRLEETEQNLLRITDIIGELTSNMDALAQQAEKATLYQELDGELTRLDVGLLARQLQTVV 238

Query: 206 ----------NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
                       L+    +  Q+       L ++  L    D+    L     +      
Sbjct: 239 SRLEEQRAVGAELAQKAADIEQRMQTAEEALEVSRQLVAALDEELNVLSVRLTEAASRQE 298

Query: 256 KMDSMS 261
           + +   
Sbjct: 299 RAEGRL 304



 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 71/190 (37%), Gaps = 35/190 (18%)

Query: 180  SSWCSSIEAQMAELG---------VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
             +  +++  Q+ ELG          +    R++ + A  + + E   K +       L  
Sbjct: 977  RARIAALREQIRELGPVNLQAIEDYRAARERLDFLQAQEADLQE--AKASLYRAISELDR 1034

Query: 231  FLDGKFDQSFCALKEEYAK---KLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-------- 279
             +   F +SF  +++ + +   +LF+G K D             DL+    +        
Sbjct: 1035 RIKSHFYESFQEIRQAFQQVFTELFEGGKADLRL------VDEDDLLETGIEIIAQPPGK 1088

Query: 280  KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
            KA  ++  S GE+ +  + +  A  R+       +P ++LDE+ A LDE       R + 
Sbjct: 1089 KAQPLSLLSGGERAMTAIALLFALLRV-----RPSPFVVLDEVEAALDEANVERFSRYLK 1143

Query: 340  DIG--SQIFM 347
                  Q   
Sbjct: 1144 HASEHCQFIC 1153


>gi|332203095|gb|EGJ17163.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA47901]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|288929747|ref|ZP_06423590.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288328848|gb|EFC67436.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 681

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 125/397 (31%), Gaps = 75/397 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFR-RASY- 61
           + IK +NI  FR++    + F     + +G N  GK+N+L A+   LS   G R   S  
Sbjct: 1   MYIKEINILNFRSFKEALIPFHEGVNVIIGHNNTGKSNLLRAMGLVLSYSNGHRLGTSDL 60

Query: 62  ------ADVTRIG-----------------SPSFFSTFARVE-----GMEGLADISIKLE 93
                 A++ R                     +  + FA +        E       KL+
Sbjct: 61  FYETDVAELQRQSPRIQITLVLRRSADENLDSADMALFANMMTDPALSEEAELRYEFKLD 120

Query: 94  TRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP 153
              +++ +    N +  + + ++ +   I     S     SG +      ++  +  ID 
Sbjct: 121 DSQEKNYKADVANAITAKEIWKIIEQDYIRLYKSS----RSGGNQAAGININETLGQIDF 176

Query: 154 RHRRRMID--------FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
           +    + D        +  L+R       +    +    +      E+  ++   R + +
Sbjct: 177 QFLDAIRDVSHDLYAGYNPLLRDVLNFFIDYSVKNDVTKTEN----EIKEQLKALRDDFV 232

Query: 206 NA---LSSLIMEYVQKENFPHIKLSLT-----GFLDGKFDQSFCALKEEYAKKLFDGRKM 257
                L   + + +Q      +K +L         +  FD +    +     ++F    +
Sbjct: 233 QQSRPLMQTLQDRLQDGKNVFLKYALDTGATFNGAEPDFDGTVTENEMFSVLRMFIKYAV 292

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317
                 T  G   ++LI      A   A GS                  +         L
Sbjct: 293 GIEVPATYNGLGYNNLIYMSLLLAKMQADGS---------------IAYMKRNAKVLSFL 337

Query: 318 LLDEISAHLDEDKRNALFRIVTDIGS-----QIFMTG 349
            ++E  AHL    +    + + D        QIFMT 
Sbjct: 338 AVEECEAHLHPAMQYKFLKFLQDNNLNGHVRQIFMTS 374


>gi|282163298|ref|YP_003355683.1| chromosome segregation protein SMC [Methanocella paludicola SANAE]
 gi|282155612|dbj|BAI60700.1| chromosome segregation protein SMC [Methanocella paludicola SANAE]
          Length = 1173

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 102/276 (36%), Gaps = 40/276 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + ++ F+++    ++ F    T   G NG GK+N++++I F   LS  R  R   
Sbjct: 1   MHIKEIELNNFKSFGRKAKIPFFDDFTTISGPNGSGKSNVIDSILFCLGLSNSRSMRAEK 60

Query: 61  YADVT------RIGSPSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVI 110
             D+         GS      F   +      +    I+ ++++ D         N+  +
Sbjct: 61  LTDLIYSVNGKSPGSADVTIRFDNTDREMPIDQDEVTITRRIKSSDSGYYSYYYFNEKPV 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
             + E+++HL  + + P    +     + R   +                        R 
Sbjct: 121 -SLSEIHEHLLKAKISPDGYNVVMQGDVTRIIEVSNF--------------------ERR 159

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSL 228
           +++ E    + +    +  ++EL   I   R++ +  + S +   +   K+   H  L  
Sbjct: 160 KMIDEIAGTAEFDEKTDKALSELD--IVRDRIDRVAIIISEVEARLAQLKDERDHALLYQ 217

Query: 229 TGFLDGKFDQSFCALKE-EYAKKLFDGRKMDSMSRR 263
           +   +   ++ +  L E + A++L D    D   + 
Sbjct: 218 SYRDEKVKNEGYLVLSELKEAQQLLDSLLEDIRDKT 253


>gi|256810817|ref|YP_003128186.1| chromosome segregation protein SMC [Methanocaldococcus fervens
           AG86]
 gi|256794017|gb|ACV24686.1| chromosome segregation protein SMC [Methanocaldococcus fervens
           AG86]
          Length = 1169

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 61/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           + ++ + +  F+++  L L      T  VG NG GK+NI++AI F+   +  +  R + +
Sbjct: 2   VALERIELKNFKSFKKLSLDIPKGFTAIVGPNGSGKSNIVDAILFVLGKTSAKKLRASRF 61

Query: 62  ADVTRIGS---PSFFSTFARVEGMEGLADI---SIKLETR---------------DDRSV 100
           + +    +     F   +        + +I    + +  R                D+  
Sbjct: 62  SGLITYHNGKRADFAEVYLYFSNDNNVFNINANKVGILRRIKKNGETDYYLIWKEGDKEK 121

Query: 101 RCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           R       +I +   L            + +I +   +ERR+ +D
Sbjct: 122 RKKMSKHEIIDLFRRLGLLGDNVISQGDLLKIINISPIERRKIID 166


>gi|221231941|ref|YP_002511093.1| chromosome partition protein [Streptococcus pneumoniae ATCC 700669]
 gi|220674401|emb|CAR68951.1| putative chromosome partition protein [Streptococcus pneumoniae
           ATCC 700669]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 109/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I + 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKDN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             + +    +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELDSTEEELAQVQELLTSYYQKREKLEEE-NQTLKKQRQ 277


>gi|149002615|ref|ZP_01827547.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP14-BS69]
 gi|237649947|ref|ZP_04524199.1| hypothetical protein SpneC1_04341 [Streptococcus pneumoniae CCRI
           1974]
 gi|237822504|ref|ZP_04598349.1| hypothetical protein SpneC19_09414 [Streptococcus pneumoniae CCRI
           1974M2]
 gi|147759226|gb|EDK66219.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP14-BS69]
 gi|332200694|gb|EGJ14766.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA41317]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|20808433|ref|NP_623604.1| ATPase involved in DNA repair [Thermoanaerobacter tengcongensis
           MB4]
 gi|20517049|gb|AAM25208.1| ATPase involved in DNA repair [Thermoanaerobacter tengcongensis
           MB4]
          Length = 549

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR--ASYA 62
           + IK + +  F+++ +  + F+ ++T+  GDNG GKT+I EAI++   G           
Sbjct: 1   MIIKSITLKNFKSHKNTIINFNDKNTVIYGDNGTGKTSIGEAIAWCLTGANLFGTENVTN 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            +  IG     S    +E      +I+        ++   + IN V    +D   + ++
Sbjct: 61  KLVTIGKNE-MSVTLVIEKDGKEYEIT----RSKKKNEIEITINGVKSTQIDLYTQFVQ 114


>gi|168485010|ref|ZP_02709948.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC1873-00]
 gi|172041873|gb|EDT49919.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC1873-00]
 gi|332201710|gb|EGJ15780.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA47368]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|149019238|ref|ZP_01834600.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP23-BS72]
 gi|147931108|gb|EDK82087.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP23-BS72]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|225859041|ref|YP_002740551.1| chromosome segregation protein SMC [Streptococcus pneumoniae 70585]
 gi|225721362|gb|ACO17216.1| chromosome segregation protein SMC [Streptococcus pneumoniae 70585]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRSIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|261350818|ref|ZP_05976235.1| putative RecF/RecN/SMC N domain protein [Methanobrevibacter
          smithii DSM 2374]
 gi|288860436|gb|EFC92734.1| putative RecF/RecN/SMC N domain protein [Methanobrevibacter
          smithii DSM 2374]
          Length = 917

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +    L ++ F++Y    + F    T+ VG+NG GK+ ILEAISF +  +        D+
Sbjct: 1  MIFTKLTLNNFKSYGHEVIKFGDGITVIVGENGAGKSTILEAISF-ALFKQHTAKKIDDL 59

Query: 65 TRIGSPS 71
           R GS  
Sbjct: 60 VRNGSDE 66



 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 81/211 (38%), Gaps = 24/211 (11%)

Query: 182 WCSSIEAQMAELGVKINI---ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           +    E +  E   +++       E+I  ++ L  + +    F     + T ++D     
Sbjct: 709 FYEVYERRYDEFAGELSEIKGQAKELIANVNVLAEKILTNYKFQQEYKNTTDYIDLLNHI 768

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTL-----IGPHRSDLI--------VDYCDKAITIA 285
                K    K+L   R    + + T         + SDL         V   +   +++
Sbjct: 769 RTLYSKNGIQKEL-RNRSRPVIQKYTKDFFDEFNFNYSDLTLDEDYEVTVFGPEGEASMS 827

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343
             S GE+  + + + L   + ++   G    +LLDE + HLD  +R+ L  ++ D+    
Sbjct: 828 MVSGGEKIAIALALRLGITQAMAK--GDLDTILLDEPTIHLDSFRRHELINLLKDMTVLP 885

Query: 344 QIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
           Q+ +  T +S  ++  +    +++  +  + 
Sbjct: 886 QMII-VTHESQLENAADN--LVKVEKNNGIS 913


>gi|148642180|ref|YP_001272693.1| purine NTPase involved in DNA repair, Rad50 [Methanobrevibacter
          smithii ATCC 35061]
 gi|148551197|gb|ABQ86325.1| purine NTPase involved in DNA repair, Rad50 [Methanobrevibacter
          smithii ATCC 35061]
          Length = 917

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +    L ++ F++Y    + F    T+ VG+NG GK+ ILEAISF +  +        D+
Sbjct: 1  MIFTKLTLNNFKSYGHEVIKFGDGITVIVGENGAGKSTILEAISF-ALFKQHTAKKIDDL 59

Query: 65 TRIGSPS 71
           R GS  
Sbjct: 60 VRNGSDE 66



 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 80/211 (37%), Gaps = 24/211 (11%)

Query: 182 WCSSIEAQMAELGVKINI---ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           +    E +  E   +++       E+I  ++ L  + +    F     + T ++D     
Sbjct: 709 FYEVYERRYDEFAGELSEIKGQAKELIANVNVLAEKILTNYKFQQEYKNTTDYIDLLNHI 768

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTL-----IGPHRSDLI--------VDYCDKAITIA 285
                K    K+L   R    + + T         + SDL         V   +   +++
Sbjct: 769 RTLYSKNGIQKEL-RNRSRPVIQKYTKDFFDEFNFNYSDLTLDEDYEVTVFGPEGEASMS 827

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343
             S GE+  + + + L   +  +   G    +LLDE + HLD  +R+ L  ++ D+    
Sbjct: 828 MVSGGEKIAIALALRLGITK--AKAKGDLETILLDEPTIHLDSFRRHELINLLKDMTVLP 885

Query: 344 QIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
           Q+ +  T +S  ++  +    +++  +  + 
Sbjct: 886 QMII-VTHESQLENAADN--LVKVEKNNGIS 913


>gi|306825116|ref|ZP_07458458.1| cell division protein Smc [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432552|gb|EFM35526.1| cell division protein Smc [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 1179

 Score = 65.7 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 106/283 (37%), Gaps = 37/283 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   IK+E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVIVTLDNEDGFIKDAGQEIKVERHIYRSGDSEYRIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR----------VEMINALSSLIM 213
             ++     L            ++ Q+  L  +   AR             ++ L + I 
Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLSKQAENARKFLDLDGQRKAIYLDVLVAQIK 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           E   +      +LS    L   + Q    L+EE  + L   R+
Sbjct: 236 ENKAELELTEEELSQVQELLTSYYQKREELEEE-NQSLKKKRQ 277


>gi|322391778|ref|ZP_08065243.1| SMC structural maintenance of chromosomes partitioning protein
           [Streptococcus peroris ATCC 700780]
 gi|321145258|gb|EFX40654.1| SMC structural maintenance of chromosomes partitioning protein
           [Streptococcus peroris ATCC 700780]
          Length = 1178

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/283 (19%), Positives = 106/283 (37%), Gaps = 37/283 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKNLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   IK+E    R+     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNQDGFIKDAGQEIKVERHIYRTGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----------EMINALSSLIM 213
             ++     L            ++ Q+  L  +   AR             ++ L + I 
Sbjct: 179 SKLQQTQDNLDRL---EDIIHELDNQIKPLEKQATTARKFIELDGQRKGIYLDVLVAQIQ 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
               + +    +L+    L   + Q    L+EE  + L   R+
Sbjct: 236 ANKDELDLTEEELNQVQELLTSYYQKREELEEE-NQTLKKKRQ 277


>gi|86609420|ref|YP_478182.1| RecF/RecN/SMC domain-containing protein [Synechococcus sp.
          JA-2-3B'a(2-13)]
 gi|86557962|gb|ABD02919.1| RecF/RecN/SMC N terminal domain protein [Synechococcus sp.
          JA-2-3B'a(2-13)]
          Length = 1205

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I  L +  F+++      F+       G+NG GKT+ILEAI+++     +   S  ++
Sbjct: 8  MRILSLALQNFKSHEDAVFTFEPGINAICGENGAGKTSILEAIAWVLF--DYCPYSQEEI 65

Query: 65 TRIGSPSFFSTFARVEGMEGL 85
           R G+     T   +   +  
Sbjct: 66 IRSGANDAVVTVQFISQWDQR 86


>gi|166364477|ref|YP_001656750.1| hypothetical protein MAE_17360 [Microcystis aeruginosa NIES-843]
 gi|166086850|dbj|BAG01558.1| unknown protein [Microcystis aeruginosa NIES-843]
          Length = 662

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +KI  + I  F+++  + +  +    +F G N  GKTN+LEAI+ 
Sbjct: 1  MKISKIQIKNFKSFQDVTVDLEPDFNVFTGVNNSGKTNLLEAIAL 45


>gi|315640112|ref|ZP_07895234.1| cell division protein Smc [Enterococcus italicus DSM 15952]
 gi|315484089|gb|EFU74563.1| cell division protein Smc [Enterococcus italicus DSM 15952]
          Length = 1195

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 104/287 (36%), Gaps = 43/287 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + ++ F+++A+   + F+ Q T  VG NG GK+NI EAI ++   S  +  R   
Sbjct: 1   MYLKRIEVAGFKSFANRTTIQFEDQVTAIVGPNGSGKSNITEAIRWVLGESSAKSLRGGR 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS S            ++  +    I    + +  R  R+      +N    R
Sbjct: 61  MPDIIFAGSESRKPLNIAEVTIVLDNSDNYLPIEYTEVSVTRRLRRTGESDFFLNKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IFS    +RR   +             ++ ++
Sbjct: 121 LRDIQELFMDSGLGKESFSIISQGKVEAIFSSKPEDRRGVFEE---------AAGVLKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVK--INIARVEMINALSSLIMEYV- 216
              +     L E   +          +E Q+A L  +     A V++   L+ + + Y  
Sbjct: 172 TRKKQAEAKLNETQDNLHRVQDIVYELEEQLAPLREQKETAQAYVKLKEELTGVDVAYTV 231

Query: 217 -----QKENFPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKM 257
                 K++   I+L L    +   D Q     KEE   +    R+ 
Sbjct: 232 QEVVKAKQSSDEIQLRLQDAAEKLEDLQGAILQKEELLLRARSEREQ 278


>gi|299856726|pdb|3KTA|A Chain A, Structural Basis For Adenylate Kinase Activity In Abc
           Atpases
 gi|299856728|pdb|3KTA|C Chain C, Structural Basis For Adenylate Kinase Activity In Abc
           Atpases
          Length = 182

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 24/164 (14%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASY 61
           I+ L +  F++Y    + + F    T  VG NG GK+NI +AI F+  G      R +  
Sbjct: 4   IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAXRASRI 63

Query: 62  ADVTRIGS-PSFFSTFARVEGMEGLADISIKL---ETRDDRSVR-----CLQINDVVIRV 112
           +D+   GS     + +A V       D    +   E    R V         +N      
Sbjct: 64  SDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRA-T 122

Query: 113 VDELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRM 147
             E+   L  + + P    I              +ERR  +D +
Sbjct: 123 RSEILDILTAAXISPDGYNIVLQGDITKFIKXSPLERRLLIDDI 166


>gi|253577470|ref|ZP_04854785.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
          str. D14]
 gi|251843170|gb|EES71203.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
          str. D14]
          Length = 699

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 22/46 (47%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  L I  FRN+     VF       +G NG GKTN L AI  +
Sbjct: 1  MHISSLKIRNFRNFQKANFVFKEGVNTIIGANGSGKTNALFAIRLI 46


>gi|37522891|ref|NP_926268.1| chromosome segregation SMC protein [Gloeobacter violaceus PCC 7421]
 gi|35213893|dbj|BAC91263.1| glr3322 [Gloeobacter violaceus PCC 7421]
          Length = 1165

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/216 (20%), Positives = 88/216 (40%), Gaps = 26/216 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + +K L I  F+++    R+      T+  G NG GK+NI++A+ F   LS  RG R   
Sbjct: 1   MHLKCLEIERFKSFGPYTRIPLLEGFTVVSGPNGSGKSNIIDALLFALGLSTSRGMRAEK 60

Query: 61  YADVTRIGS---PSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDVVIRVVD- 114
            +D+   G+       +    ++   G  ++++  +L+     S    Q+N     + D 
Sbjct: 61  LSDLIHQGAAKGEVAVTVTFALDAAAGGGELTVCRRLKVNGPNSTSSYQLNGSPCTLTDL 120

Query: 115 --ELNKHLRI-----SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
             EL +H          L   +  I +  + ERR  +D +           + +F+R + 
Sbjct: 121 HEELARHHIYPEGYNVVLQGDVTGIIAMPARERREIIDELAG---------VAEFDRKIE 171

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
              R L E    S    ++ +++ E   ++   R +
Sbjct: 172 AARRELGEVEVRSDRIQAVVSELLEQMERLQKERAK 207


>gi|300779091|ref|ZP_07088949.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
 gi|300504601|gb|EFK35741.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
          Length = 703

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 24/46 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  L+I  FRN+ S    F       +G+NG GKTN+  A+  L
Sbjct: 1  MYISGLSIRNFRNFKSAHFKFTEGINTIIGENGSGKTNLFYALRIL 46


>gi|163814045|ref|ZP_02205437.1| hypothetical protein COPEUT_00198 [Coprococcus eutactus ATCC 27759]
 gi|158450494|gb|EDP27489.1| hypothetical protein COPEUT_00198 [Coprococcus eutactus ATCC 27759]
          Length = 1185

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 94/277 (33%), Gaps = 38/277 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + ++ F+++A+ +   F+   T  VG NG GK+N+ +A+   L     +  R + 
Sbjct: 1   MYLKSIEVNGFKSFANKIVFKFNHGITCIVGPNGSGKSNVADAVRWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIGS-----PSFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +    I     T   R  R       IN  V R
Sbjct: 61  MEDVIFSGTQLRKPQGSAYVAITLDNSDHSLPIDYGEVTVARRVYRSGESEYLINGTVSR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D  +                   +++I +G   ERR   D     +    ++     E
Sbjct: 121 LKDVYSLFFDTGIGKEGYSIIGQGQIEKILNGKPEERRELFDEAAGIVK--FKKNKAATE 178

Query: 164 RLMR-GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----------INALSSLI 212
           + +   R+ L             +E Q+  L  + + AR  +          +NA    I
Sbjct: 179 KALEAERDNLSRVN----DILKELEKQVGPLKEQSDTARKYLAFKSELKNLDVNAFLLEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
            +          +L +      +    +   KEEY +
Sbjct: 235 EKLRADLERDQARLEIVNDDIEENRNLYEQTKEEYEQ 271


>gi|222444642|ref|ZP_03607157.1| hypothetical protein METSMIALI_00254 [Methanobrevibacter smithii
          DSM 2375]
 gi|222434207|gb|EEE41372.1| hypothetical protein METSMIALI_00254 [Methanobrevibacter smithii
          DSM 2375]
          Length = 917

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +    L ++ F++Y    + F    T+ VG+NG GK+ ILEAISF +  +        D+
Sbjct: 1  MIFTKLTLNNFKSYGHEVIKFGDGITVIVGENGAGKSTILEAISF-ALFKQHTAKKIDDL 59

Query: 65 TRIGSPS 71
           R GS  
Sbjct: 60 VRNGSDE 66



 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 81/211 (38%), Gaps = 24/211 (11%)

Query: 182 WCSSIEAQMAELGVKINI---ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           +    E +  E   +++       E+I  ++ L  + +    F     + T ++D     
Sbjct: 709 FYEVYERRYDEFAGELSEIKGQAKELIANVNVLAEKILTNYKFQQEYKNTTDYIDLLNHI 768

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTL-----IGPHRSDLI--------VDYCDKAITIA 285
                K    K+L   R    + + T         + SDL         V   +   +++
Sbjct: 769 RTLYSKNGIQKEL-RNRSRPKIQKHTKDFFDEFNFNYSDLTLDEDYEVTVFGPEGEASMS 827

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343
             S GE+  + + + L   + ++   G    +LLDE + HLD  +R+ L  ++ D+    
Sbjct: 828 MVSGGEKIAIALALRLGITQAMAK--GDLDTILLDEPTIHLDSFRRHELINLLKDMTVLP 885

Query: 344 QIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
           Q+ +  T +S  ++  +    +++  +  + 
Sbjct: 886 QMII-VTHESQLENAADN--LVKVEKNNGIS 913


>gi|114566314|ref|YP_753468.1| chromosome segregation SMC protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337249|gb|ABI68097.1| condensin subunit Smc [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 1191

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 135/361 (37%), Gaps = 51/361 (14%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPG--RGFRRAS 60
           + +K L+I  F+++A +  L  +    I VG NG GK+NI++AI   L     R  R   
Sbjct: 1   MYLKRLDIKGFKSFADNTELQLNPGLNIVVGPNGCGKSNIVDAIRWVLGETSIRQLRGQK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   GS    +   A VE +   +D S+ L+  +    R +         +N   +R
Sbjct: 61  NEDVIFNGSDKKKALGMAFVELVIDNSDHSLPLDFSEITLGRKVHRSGESEFYLNKSRVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF- 162
           + D         + K          ++ + +G +++RR  L+     I   +R++  +  
Sbjct: 121 LKDISDLLSGSGVGKKGYAIISQGELEEVLNGQALDRRLMLEEAAGVIK--YRQQRDEVK 178

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           +R++   N LL  G         +E         +++ R E+        +         
Sbjct: 179 KRILNSSNDLLRLG-------DILEE--------LDLRRQELFRKAEKARLYMALNSECQ 223

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KA 281
            +  S+ GF   + ++ +     +  +K     + +  ++   +    + L  +      
Sbjct: 224 ELDKSVLGFELARTEKDWQQKSRDLIQK-----QNEIQAQAGQVALLEAKLREEEEGLAR 278

Query: 282 ITIAHGSTGEQKVVL---VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
             ++ G  GEQ+ +L   + +     RL           + D ++   DE K+  L   +
Sbjct: 279 QQLSLGELGEQRHLLESRLNLLQGEIRLGEERIKNNNKRIDDAVA---DEKKQLILLDNI 335

Query: 339 T 339
            
Sbjct: 336 Q 336


>gi|284161186|ref|YP_003399809.1| SMC domain protein [Archaeoglobus profundus DSM 5631]
 gi|284011183|gb|ADB57136.1| SMC domain protein [Archaeoglobus profundus DSM 5631]
          Length = 868

 Score = 65.3 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 110/295 (37%), Gaps = 43/295 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA----S 60
           + IK++ I  F+++ S R+ FD    + VG NG GKT+ILEAI+    G           
Sbjct: 1   MLIKYVEIENFKSHRSSRVEFDRGVNLIVGRNGAGKTSILEAIAVALYGVKHGVKPSGVK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI--NDVVIRVVDELNK 118
             D+ R    S      R+       D  I   +  +  +RC ++   D  IR   E N 
Sbjct: 61  KDDLIR---DSASRYEIRLGFDFNGRDCLIVRSSDGNSYLRCDKLLEGDERIREWVERNV 117

Query: 119 HLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG---- 168
                WL         +D I      ERR  + + +  I+  + R   +  ++++     
Sbjct: 118 APSHVWLNAIYVRQGEIDEIVKDD--ERREKIIKRITQIE-DYERAWENLGKVIKHFKEE 174

Query: 169 RNRLLTEGYFDSSWC-------SSIEAQMAELGVKINIAR------------VEMINALS 209
           ++RL  E   +S            +EA+  EL  K+   R             E +  L 
Sbjct: 175 KSRLEKEIKAESDVENRIKEVKEELEAKKRELDKKMIELRDVEEKLAEAEAEKERVEKLR 234

Query: 210 SLIMEY-VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
               E   +KE+       +   + G  ++    LK+E  +     R+++ +   
Sbjct: 235 EKFEELNREKESIEKHAGKIEERIRGLRER-RNGLKKEIEELKSRVRRLEEIRGY 288



 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 18/231 (7%)

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIAR--VEMINAL 208
           D  +R     +   +R R   L EG         ++E    +L  ++   R   E +  +
Sbjct: 641 DETYRNVYNLYTE-LRSRYFGLREGVERLKDHIKTLEKSAEDLENRVKKLREKRERVEKI 699

Query: 209 SSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
              ++  ++  +E F   K+SLT +   + ++    + EE     + G  +    +R   
Sbjct: 700 GREVLPKLEEIREKFRKYKVSLTEYAFKEVEKIASEIFEEMTDGKYSGIVLKREEKRK-- 757

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
              +  + V Y      I+  S GE   + +   LA +  +    G  P+L+LDE +  L
Sbjct: 758 --EKVTVKVLYQGAERDISFLSGGELIALGLAFRLALSVFMIQ--GKIPLLILDEPTPFL 813

Query: 327 DEDKRNALFRIVT---DIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
           D+++R  L  I+        Q+ +   D+ + D  +   K +R+  H  + 
Sbjct: 814 DDERRRKLVDIMNRYLKKIPQVIVVTHDEELRDVAD---KVIRVELHGGVS 861


>gi|126699476|ref|YP_001088373.1| putative conjugative transposon DNA recombination protein
          [Clostridium difficile 630]
 gi|115250913|emb|CAJ68739.1| putative DNA recombination protein Tn1549-like,CTn5-Orf24
          [Clostridium difficile]
          Length = 540

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          + I+ L I  F+ ++    + F+    I VG+NG GK+ ILEAI+ +  G    +    +
Sbjct: 1  MSIRKLKIKNFKCFSDWFTVDFENGINILVGNNGTGKSTILEAINLVLTGTYHGKNIRNE 60

Query: 64 VTRI 67
          +T+ 
Sbjct: 61 LTQY 64


>gi|259046635|ref|ZP_05737036.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175]
 gi|259036800|gb|EEW38055.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175]
          Length = 1189

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 101/292 (34%), Gaps = 32/292 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           ++++ + +S F+++A    + FD   T  VG NG GK+N+ EAI   L     +  R   
Sbjct: 1   MQLEKIEMSGFKSFADKTTIEFDKGVTAVVGPNGSGKSNLSEAIKWVLGEQSAKSLRGKR 60

Query: 61  YADVTRIGSP-------SFFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIR 111
             DV   GS        +  + +   E      D +  +     +        IN   +R
Sbjct: 61  MDDVIFAGSQTRKPVNIAEVNLYINNEDKVLATDQTQVVLTRRLNRNGASDFLINKKPVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +++IF+    ERR  ++     +   ++ R    +
Sbjct: 121 LKDITDLMMDSGLGKDSFALISQGKVEQIFNEKPEERRMIIEEAAGVLK--YKDRKNQAQ 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +      L            IE Q+A L  +    R + I  +S        +     
Sbjct: 179 RKLNQTQDHLNRV---EDILHEIEGQLAPLEEQ----REKAIAYVSKKEQLEEVETALLA 231

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYA--KKLFDGRKMDSMSRRTLIGPHRSDL 273
           +++           Q    L+E+ A  +   +  ++D    +  +     DL
Sbjct: 232 VEIETLNAQWKVALQEVEQLQEQLAQTEATLESLQLDIEENQVTLEARNEDL 283


>gi|228470633|ref|ZP_04055489.1| RecF/RecN/SMC N domain protein [Porphyromonas uenonis 60-3]
 gi|228307641|gb|EEK16620.1| RecF/RecN/SMC N domain protein [Porphyromonas uenonis 60-3]
          Length = 680

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFR 57
          + IK + I  FRN+    + F     + +G N  GK+N+L AI   L    G R
Sbjct: 1  MYIKEIKILNFRNFKEALIPFHEGVNVIIGHNNTGKSNLLRAIGLVLGYNYGHR 54


>gi|227488598|ref|ZP_03918914.1| possible chromosome segregation protein Smc [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091492|gb|EEI26804.1| possible chromosome segregation protein Smc [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 1138

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 30/212 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   + F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASATTMKFEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKQLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            +   +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGAGSRKPLGRAEVTLNINNDDGALPIEYSEVSITRRMFRDGASEYEINGSKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR +++     +  +        E
Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGKITEILESRPEDRRAYIEEAAGVLKHK-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAEL 193
           +    R     +   D        ++ Q+  L
Sbjct: 176 KA--QRKLTGMQANLDRLTDLTDELKRQLKPL 205


>gi|320088176|emb|CBY97938.1| ATP-dependent Clp protease ATP-binding subunit clpX [Salmonella
          enterica subsp. enterica serovar Weltevreden str.
          2007-60-3289-1]
          Length = 396

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+AI  
Sbjct: 1  MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRL 45


>gi|13096783|pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
 gi|13096784|pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
 gi|13096785|pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
 gi|13096786|pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
 gi|13096787|pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
 gi|13096788|pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
          Length = 322

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 16/152 (10%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++K L +  F+++    L  F  + T  VG NG GK+NI++AI ++   +     R + 
Sbjct: 1   MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASE 60

Query: 61  YADVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR---VVD 114
             D+   GS +     S +  +   E   +I++  E +         +N   +R   + D
Sbjct: 61  KFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELK-RTGENTYYLNGSPVRLKDIRD 119

Query: 115 ELNKHLRISWLVP-----SMDRIFSGLSMERR 141
                              +DRI +    E R
Sbjct: 120 RFAGTGLGVDFYSIVGQGQIDRIVNASPEELR 151


>gi|215428366|ref|ZP_03426285.1| chromosome partition protein Smc [Mycobacterium tuberculosis T92]
 gi|289751590|ref|ZP_06510968.1| chromosome partition protein Smc [Mycobacterium tuberculosis T92]
 gi|289692177|gb|EFD59606.1| chromosome partition protein Smc [Mycobacterium tuberculosis T92]
          Length = 124

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F+   T  VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFAAPTTLRFEPGITAVVGPNGSGKSNVVDALAWVMGEQGAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +    I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGTSSRAPLGRAEVTVSIDNSDNALPIEYTEVSITRRMFRDGASEYEINGSSCR 120

Query: 112 VVD 114
           ++D
Sbjct: 121 LMD 123


>gi|20090716|ref|NP_616791.1| hypothetical protein MA1866 [Methanosarcina acetivorans C2A]
 gi|19915770|gb|AAM05271.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 613

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 65/400 (16%), Positives = 131/400 (32%), Gaps = 79/400 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K      FR    + L  ++   + +G N  GKT+IL+++  L+ G G    SY+  
Sbjct: 1   MHVK-----NFRCIKEINLELNSGLNVIIGANNSGKTSILDSLR-LALGIG----SYSRS 50

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC--LQINDVVIRVVDELNKHLRI 122
             + +  FF      +      D++    T +DR V    L++N      ++   ++   
Sbjct: 51  IYVSNEDFFVDEFGQKAQTIEIDLTFSELTPEDRGVFIEMLKVNGDGNHELEFHVRYK-- 108

Query: 123 SWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMIDFERLMRGRN 170
                      +G+   R R+                +F I   +   + D E  ++   
Sbjct: 109 -------IEKKNGIEKIRVRYWGGEKEANTIPIEVMELFHI--VYLEALRDSENYLKPNR 159

Query: 171 -----RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
                +L  +   D +       Q+ E          E+I      I E+++     H  
Sbjct: 160 GNKLGQLFLKLVPDETAQEKHAQQIYESITANEDW-NELITDARKKINEHLENTTLEHDT 218

Query: 226 LSLT--------GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
           LS+           +  +       LK+   + + +  + +   +     PH  +LI+  
Sbjct: 219 LSIDIDFAPVDFTKIAERLKIYIPILKKIKREMIENIFEEEGWEKYFEY-PHSDELILKK 277

Query: 278 CDKAITIAHGSTGEQK------------------------VVLVGIFLA-HARLISNTTG 312
             K +        E K                        ++ +   +      ++  + 
Sbjct: 278 DIKDLLKNEA-NSELKFKISKLEKFIQKFEIYQNGLGYNNLIYIATIIGDLIERVNRKSE 336

Query: 313 FAPILLLDEISAHLDEDKRNALFRI---VTDIGSQIFMTG 349
               LL++E  AHL    +N LF     +     QIF+T 
Sbjct: 337 NYIALLIEEPEAHLHPQLQNILFNYFKNIESKNIQIFLTS 376


>gi|307709492|ref|ZP_07645949.1| chromosome segregation protein SMC [Streptococcus mitis SK564]
 gi|307619806|gb|EFN98925.1| chromosome segregation protein SMC [Streptococcus mitis SK564]
          Length = 1179

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 109/291 (37%), Gaps = 38/291 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK---------INIARVE-MINALSSLIM 213
             ++     L            ++ Q+  L  +         +   R    ++ L + I 
Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLEKQAENTRKFLDLEGKRKAIYLDVLVAQIK 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
           E   + +    +L+    L   + Q    L+EE   +    ++ D  +  T
Sbjct: 236 ENKAELDSTAEELAQVQELLTSYYQKREKLEEE--NQTLKKQRQDLQAEMT 284


>gi|16767037|ref|NP_462652.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|16422321|gb|AAL22611.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. LT2]
 gi|267996020|gb|ACY90905.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. 14028S]
 gi|312914778|dbj|BAJ38752.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. T000240]
 gi|321226808|gb|EFX51858.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. TN061786]
 gi|332990601|gb|AEF09584.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Typhimurium str. UK-1]
          Length = 396

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+AI  
Sbjct: 1  MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRL 45


>gi|319789740|ref|YP_004151373.1| SMC domain protein [Thermovibrio ammonificans HB-1]
 gi|317114242|gb|ADU96732.1| SMC domain protein [Thermovibrio ammonificans HB-1]
          Length = 894

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 90/242 (37%), Gaps = 23/242 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ L++  F ++ S  + F  Q  + +G+N  GKT+IL  + F   G   +RA   ++ 
Sbjct: 3   RLRGLSLKNFLSHRSTEIPFTDQAFVILGENASGKTSILRGVFFGVFGEDLKRAKAEELI 62

Query: 66  RIGSPSF-FSTFARVEGMEGLADISI------KLETRDDRSVRCLQINDVVIRVVDEL-- 116
              S S         +G     +  I      + E  +D  +    +  V   +++ L  
Sbjct: 63  NRASNSAEVKVEFLYKGKLYTLERRIHVRRSSEAELYEDGRLVARGVKQVKAYLLENLGL 122

Query: 117 -NKHLRISWLVP--SMDRIFSGLSMERRRFLDR-----MVFAIDPRHRRRMIDFERLMRG 168
                + +  VP   +  +F G   ERR+ L+R      +  +  R +  +   +  +  
Sbjct: 123 DGNLFKNTVFVPQGEILDLFKGTPKERRKVLNRLLGLEEIGELHRRIKEELQKLKNTLNL 182

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS----SLIMEYVQKENFPHI 224
               +            ++ ++ E   +  + RVE +  L       I E ++       
Sbjct: 183 VVERVKHYQESRQRLRELQLRLQE--KERELERVERLRELETEKVEGIKEELRALQAEKE 240

Query: 225 KL 226
           KL
Sbjct: 241 KL 242



 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
             +T+   S G+Q    + +  A A+  +       +L+LDE + HLD+ +R AL  ++ 
Sbjct: 798 GTLTLEQLSGGQQIAFALALRFAMAKQFNQ---KMELLVLDEPTVHLDQPRRTALTELLM 854

Query: 340 DIG 342
            + 
Sbjct: 855 KLK 857


>gi|300780914|ref|ZP_07090768.1| chromosome segregation protein Smc [Corynebacterium genitalium ATCC
           33030]
 gi|300532621|gb|EFK53682.1| chromosome segregation protein Smc [Corynebacterium genitalium ATCC
           33030]
          Length = 1153

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 124/404 (30%), Gaps = 68/404 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +  L +  F+++AS   + F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MHLSSLTLKGFKSFASSTTMKFEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+        A V      +D  + +E       R +         IN    R
Sbjct: 61  MEDVIFAGAGERKQLGRAEVTLTFDNSDRKLPIEYTQVAITRRMFRDGASEYEINGSKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + I      ++ I      +RR F++     +  R R+     +
Sbjct: 121 LMDIQELLSDSGIGREMHIIVGQGKLNEILESRPEDRRAFIEEAAGVLKHRRRKEKAQRK 180

Query: 164 RLMRGRN--------------------RLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
                 N                    +        +      +A++   G ++   R  
Sbjct: 181 LTGMQANLDRLTDLTDELGKQLKPLARQAEAAQRAATVQADLRDARLKIAGHRVVTLRAS 240

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
           +I+A +     + QK      +L          +++                 + S++ R
Sbjct: 241 LIDA-TRAAELHAQKVQDVTAELEDAEGHQQTVEENQARATAAADAAQQLWFGLSSLAER 299

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGE--QKVVLVGIFLAHARLISNTTGFAPILLLDE 321
           T      +     + D+ +       G+  +K++ +                     L+ 
Sbjct: 300 TSATLRIASERARHADEIVDY----RGQDPKKLIALAERAEEDHAAKQAAHDKAQAALNA 355

Query: 322 ISAHLD--------------------EDKRNALFRIVTDIGSQI 345
           + + +                      D+R  + R++    SQ 
Sbjct: 356 VLSEVAELKEKAAAAEAEHKAQVRAIADRREGVVRLLAQEESQA 399


>gi|297478203|ref|XP_002689921.1| PREDICTED: structural maintenance of chromosomes 2 [Bos taurus]
 gi|296484411|gb|DAA26526.1| structural maintenance of chromosomes 2 [Bos taurus]
          Length = 1191

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 94/273 (34%), Gaps = 29/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSVILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKALVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + ++     ++  I+     RM +++
Sbjct: 120 VNANNTRVYDLFCSVGLNVNNPHFLIMQGRIT--KVMNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           +    R     E        + +E ++     K+   R   +     L+ E    E+   
Sbjct: 178 KQNAQRTIEKKEAKL-REIKTILEEEITPTIQKLKEERSSYLE-YQKLLREI---EHLSR 232

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L     +      +E   K+   ++
Sbjct: 233 LYIAYQFLLAEDTKERSAEALKEMQDKIKKLQE 265


>gi|332074580|gb|EGI85054.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA17545]
          Length = 1179

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 107/280 (38%), Gaps = 31/280 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQM--AELGVKINIARVE-MINALSSLIMEYV 216
             ++     L       Y   +    +E Q   A   + +   R    ++ L + I E  
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQDENARKFLDLEGQRKAIYLDVLVAQIKENK 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 239 AELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|312867169|ref|ZP_07727379.1| DNA repair protein RecN [Streptococcus parasanguinis F0405]
 gi|311097298|gb|EFQ55532.1| DNA repair protein RecN [Streptococcus parasanguinis F0405]
          Length = 552

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/385 (16%), Positives = 130/385 (33%), Gaps = 65/385 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                +     +G+E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFTVESNRHLTALFEEQGLEWTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+               F D   F     +R+   D++RL +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDAAFFQTKDAYRQTFEDYKRLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINA--LSSLIMEYVQK 218
             L      + +    IE Q+AE+           ++   R  ++N   ++  +      
Sbjct: 176 VELQRNQQENKARIEMIEFQIAEIEAASLEVDEDLRLEQERQRLLNHKMIADTLTNAYTM 235

Query: 219 ENFPHIKLSLTGFLDG--------KFDQSFCALKEEYAKKLFD-----GRKMDSMSRRTL 265
            +      SL+             ++D S+  L  + ++  +       R  D +     
Sbjct: 236 LDAEEFS-SLSNVRSAMNDLESIEEYDPSYKELSSQLSETFYALEDITKRLEDVVDGLEF 294

Query: 266 IGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
            G     +        +IT  +G  G+ K VL          ++  T    +L   ++S+
Sbjct: 295 DGNRLMQVESRLDLIHSITRKYG--GQVKDVL--------EYLAQITKEYSLLTGSDLSS 344

Query: 325 HLDEDK-----RNALFRIVTDIGSQ 344
             D +K       +L  +  D+  Q
Sbjct: 345 E-DLEKELKRLEKSLVTLAQDLNDQ 368


>gi|307108886|gb|EFN57125.1| hypothetical protein CHLNCDRAFT_51187 [Chlorella variabilis]
          Length = 2055

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 6    KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS--FLSPGRGFRRASYAD 63
             I  + +  F++ + L + F     + VG NG GK+++L+A+   F +  R    AS A+
Sbjct: 916  HITSVRLQGFKSVSQLDVRFGRGLNVIVGANGCGKSSLLDALCFAFAAAPRSLSVASLAE 975

Query: 64   VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHLR 121
            +    S        +++   G       ++        R  ++N    R   E+ + LR
Sbjct: 976  LQNSDSNQVCEVCVQLQTGRGTGREMHTVQAALTPDGTRAYKVNG-RQRSGKEVREFLR 1033


>gi|68637931|emb|CAI36136.1| hypothetical protein [Pseudomonas syringae pv. phaseolicola]
          Length = 710

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
          + I  L +  +RN+    +VF+      +G+NG GKTN+  A
Sbjct: 1  MHISRLQLVNYRNFECANVVFNKGVNTIIGENGSGKTNLFRA 42


>gi|148259805|ref|YP_001233932.1| ATP-dependent OLD family endonuclease [Acidiphilium cryptum JF-5]
 gi|146401486|gb|ABQ30013.1| ATP-dependent endonuclease of the OLD family-like protein
           [Acidiphilium cryptum JF-5]
          Length = 647

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 72/376 (19%), Positives = 125/376 (33%), Gaps = 66/376 (17%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASY 61
           + ++I  L+I  FR+  +L +      T+ +G N  GKT IL+A+  +   R G R   +
Sbjct: 7   DGMRITRLHIENFRSVRNLDIELGE-TTVLIGPNNAGKTAILDAVRIVLTRRWGQRGTGF 65

Query: 62  ADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-----CLQINDVVIRVVDE 115
            +       P              L  + I +   + RS          + D++    D 
Sbjct: 66  TENDVHRPEPDG--------DPRTLPPVRIVIAMEESRSGEWDPDMVAALEDIITVTADR 117

Query: 116 LNKHLRISW----------LVPSMDRIFS-GLSM-ERRRFLDR-MVFAIDPRH-RRRMID 161
           +   L +              P+   + S G+ + ERRR ++    F+  P      + D
Sbjct: 118 MRNLLTVQVTCAWSEEKEAFDPAWQFLDSAGVPLRERRRAINLTGFFSYMPLFWLGALRD 177

Query: 162 FERLMRGRN----RLLTEGYFDSSWCSSIEAQMAELGVKINIA--RVEMINALSSLIMEY 215
                  R+    RLL          +     +AEL  +I  A  R+  I  +       
Sbjct: 178 ATNEFTPRSGHWGRLLRSVRIPDELEAEALRILAELDARIAAADPRLAEIAEMIGQATRV 237

Query: 216 VQKENFPHIKL-SLTGFLDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
              E     +L +L   ++    ++   L+ EE    L  G            G     L
Sbjct: 238 AIGEGPGGARLATLPLGIEEMLQRTGIVLRNEELRPWLPLGH----------HGQGLQSL 287

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            V +  +A  +      +Q        LA A       G   +  ++E  AHL       
Sbjct: 288 AVIFLFQAAVL------QQ--------LAEAE----RPGVEAVFAIEEPEAHLHPQAART 329

Query: 334 LFRIVTDIGSQIFMTG 349
           L+  V  +  Q  M+ 
Sbjct: 330 LWEHVQALAGQKLMST 345


>gi|149012299|ref|ZP_01833368.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147763625|gb|EDK70560.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP19-BS75]
          Length = 1081

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|292655017|ref|YP_003534914.1| DNA double-strand break repair ATPase Rad50 [Haloferax volcanii
           DS2]
 gi|49036440|sp|P62133|RAD50_HALVO RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|46309119|emb|CAG25775.1| DNA double-strand break repair Rad50 ATPase [Haloferax volcanii]
 gi|291371675|gb|ADE03902.1| DNA double-strand break repair ATPase Rad50 [Haloferax volcanii
           DS2]
          Length = 893

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++   + I  F+ Y    L      T+  G NG GK+++LEA  F   G      +  DV
Sbjct: 1   MRFTRIAIRNFKPYEDAELDLRDGVTVIHGVNGSGKSSLLEACFFALYGSKALAGTLEDV 60

Query: 65  TRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCL 103
              G+     T   V  G E   D  +++      + +C+
Sbjct: 61  VTTGADDAEITLEFVHDGGEYRIDRRVRVSGDRATTAKCV 100


>gi|4324607|gb|AAD16951.1| putative ATP binding protein SugR [Salmonella enterica subsp.
          enterica serovar Typhimurium]
          Length = 519

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+AI  
Sbjct: 1  MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRL 45


>gi|85709148|ref|ZP_01040214.1| SMC protein [Erythrobacter sp. NAP1]
 gi|85690682|gb|EAQ30685.1| SMC protein [Erythrobacter sp. NAP1]
          Length = 1140

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 78/229 (34%), Gaps = 30/229 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++I  L +S F+++     L  +   T  VG NG GK+N+LEAI ++      +  R   
Sbjct: 1   MQISRLKLSGFKSFVEPAELRIEPGLTGVVGPNGCGKSNLLEAIRWVMGENSPKSMRSGG 60

Query: 61  YADVTRIG-SPSFFSTFARVEGM-EGLADISIKLETRDDRS-VRCLQINDVVIRVVD--- 114
             DV   G S      FA V        D  I +  R +R      ++N   +R  D   
Sbjct: 61  MEDVIFAGTSTRPARAFAEVVLHASDEHDEEIVVTRRIERGAGSAYRVNGRDVRAKDVAL 120

Query: 115 -----ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF----AIDP-----------R 154
                    H         + ++ +    ERR  L+         +             +
Sbjct: 121 TFADAATGAHSPALVSQGKIAQVIAAKPAERRMMLEEAAGIAGLHVRRKDAESKLRSTEK 180

Query: 155 HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           +  R+ D    +  +   L      +   + +  Q++    ++  AR  
Sbjct: 181 NLERLEDLMAGLDSQMASLKRQAKQAERYTKLTEQISHAEARLVFARWR 229


>gi|257094930|ref|YP_003168571.1| SMC domain-containing protein [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257047454|gb|ACV36642.1| SMC domain protein [Candidatus Accumulibacter phosphatis clade
          IIA str. UW-1]
          Length = 489

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 28/43 (65%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +++K + ++ FR + S  +    + ++FVG+NG GKT +L+ I
Sbjct: 14 MRLKKITLNNFRCFESFEVTLHPRLSVFVGENGAGKTAVLDGI 56


>gi|296876931|ref|ZP_06900976.1| DNA repair protein RecN [Streptococcus parasanguinis ATCC 15912]
 gi|296432062|gb|EFH17864.1| DNA repair protein RecN [Streptococcus parasanguinis ATCC 15912]
          Length = 552

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/385 (16%), Positives = 131/385 (34%), Gaps = 65/385 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                +     +G+E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFTVENNRHLTALFEEQGLEWTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+               F D   F     +R+   D++RL +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDAAFFQTKDAYRQTFEDYKRLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMINA--LSSLIMEYVQK 218
             L      + +    +E Q+AE+          V++   R  ++N   ++  +      
Sbjct: 176 VELQRNQQENKARIEMLEFQIAEIEAAALEVDEDVRLEQERQRLLNHKMIADTLTNAYTM 235

Query: 219 ENFPHIKLSLTGFLDG--------KFDQSFCALKEEYAKKLFD-----GRKMDSMSRRTL 265
            +      SL+             ++D S+  L  + ++  +       R  D +     
Sbjct: 236 LDAEEFS-SLSNVRSAMNDLESIEEYDPSYKELSSQLSETFYALEDITKRLEDVVDGLEF 294

Query: 266 IGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
            G     +        +IT  +G  G+ K VL          ++  T    +L   ++S+
Sbjct: 295 DGNRLMQVESRLDLIHSITRKYG--GQVKDVL--------EYLAQITKEYNLLTGSDLSS 344

Query: 325 HLDEDK-----RNALFRIVTDIGSQ 344
             D +K       +L  +  D+  Q
Sbjct: 345 E-DLEKELKRLEKSLVTLAQDLSDQ 368


>gi|227543202|ref|ZP_03973251.1| possible SMC structural partitioning protein [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227181011|gb|EEI61983.1| possible SMC structural partitioning protein [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 1138

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 30/212 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   + F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASATTMKFEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKQLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            +   +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGAGSRKPLGRAEVTLTINNDDGALPIEYSEVSITRRMFRDGASEYEINGSKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + +      +  I      +RR +++     +  +        E
Sbjct: 121 LMDIQELLSDSGIGREMHVIVGQGKITEILESRPEDRRAYIEEAAGVLKHK-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAEL 193
           +    R     +   D        ++ Q+  L
Sbjct: 176 KA--QRKLTGMQANLDRLTDLTDELKRQLKPL 205


>gi|167548992|ref|ZP_02342751.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA29]
 gi|205325625|gb|EDZ13464.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Saintpaul str. SARA29]
          Length = 465

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+AI  
Sbjct: 1  MRINKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIRL 45


>gi|94496121|ref|ZP_01302699.1| Chromosome segregation protein SMC [Sphingomonas sp. SKA58]
 gi|94424300|gb|EAT09323.1| Chromosome segregation protein SMC [Sphingomonas sp. SKA58]
          Length = 1147

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 24/131 (18%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++IK L +S F+++     L  +   T  VG NG GK+N+LEAI ++   S  +  R A 
Sbjct: 1   MQIKRLKLSGFKSFVDPTELRIEPGLTGIVGPNGCGKSNLLEAIRWVMGESSAKSMRGAG 60

Query: 61  YADVTRIG-----------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
             DV   G                         A   G +G  D++ ++E     + R  
Sbjct: 61  MEDVIFAGTASRPRRDFAEVSLLTIQEQGELFNAVDVGADGELDVTRRIERGAGSAYRA- 119

Query: 104 QINDVVIRVVD 114
             N   +R  D
Sbjct: 120 --NGKDVRAKD 128



 Score = 36.8 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K   +   S GEQ +  V +           T  API +LDE+ A LD+        +
Sbjct: 1037 GKKLAALTLLSGGEQALTAVALIFGLF-----LTNPAPICVLDEVDAPLDDANVERFCDL 1091

Query: 338  VTDIGSQI 345
            +  + +Q 
Sbjct: 1092 LDAMVAQT 1099


>gi|319789067|ref|YP_004150700.1| chromosome segregation protein SMC [Thermovibrio ammonificans HB-1]
 gi|317113569|gb|ADU96059.1| chromosome segregation protein SMC [Thermovibrio ammonificans HB-1]
          Length = 1171

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 121/355 (34%), Gaps = 60/355 (16%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRASYA 62
           I+ L +  F+++A    + F       VG NG GK+NI++A+ ++  G   +G R  S  
Sbjct: 2   IRSLKLKGFKSFADETEIRFSEGINCIVGPNGCGKSNIVDALKWVVGGTSPKGMRADSIK 61

Query: 63  DVTRIGSP-------SFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVD 114
           DV   G+        +  +     E +   A +  +++ R          IN   +R + 
Sbjct: 62  DVIFKGAQGRRPARSAEVAVTVAAEDLFSAASLETEVKRRVTADGDSQFFINGKKVR-LK 120

Query: 115 ELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
           ++ +      L             DR+      ERR  +D     I P  + +  +  + 
Sbjct: 121 DIQELFTNLGLSNRDYAFFEQGQVDRVLRMRPAERRALID-EAAGITP-FKEKREETLKQ 178

Query: 166 M--RGRNRLLTEGYFDSSW--CSSIEAQ------------------MAELGVKI-----N 198
           +     N     G  D       +++ Q                  +A LG ++      
Sbjct: 179 LGEAQANLESVRGVIDEVAKNLRALKNQAEKAQKFQELRTRERRLELALLGCQLKAVQEE 238

Query: 199 IARVE-MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            AR+E  I  L        ++ +   ++L        +  Q      +E  +   +  K 
Sbjct: 239 KARLEGSIKVLQEDRASLEREVSRIEVELQELRSQLEQLSQELEETTKELHEV--EKSKK 296

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
           ++  +R  +      L  +  +++         EQK+  + +  A    + +  G
Sbjct: 297 EAAVKRDFLEKEIKRLKSEIEERSFEK------EQKLKKLSLVAAEIEELRSLEG 345


>gi|284045140|ref|YP_003395480.1| SMC domain protein [Conexibacter woesei DSM 14684]
 gi|283949361|gb|ADB52105.1| SMC domain protein [Conexibacter woesei DSM 14684]
          Length = 1081

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 106/291 (36%), Gaps = 34/291 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           + +K L +  F+++    +L F +  ++ VG NG GK+N+ +A+ +    +     R  S
Sbjct: 1   MHLKSLTLKGFKSFPDRTKLAFGSGVSVVVGPNGSGKSNVTDAVLWAMGEQSPLAIRGQS 60

Query: 61  YADVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVI 110
             DV   G       S  A VE +   +D +++++  +   +R L        ++N    
Sbjct: 61  MQDVI-FGGGHGRKASQSAEVELVLDNSDKTLEMDFAEVSILRRLDRSGDGEYRLNGARC 119

Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           R+ D         L K          +++I +    +RR  ++        R RRR    
Sbjct: 120 RLADVLEVLSDTGLGKESHSVISQGRVEQIVTSKPKDRRLLIEEAAGLGKHRKRRRRAQL 179

Query: 163 ERLMRGRN--RLLTEGYFDSSWCSSIEAQ--MAELGVKINIARVEMINALSSLIMEYVQK 218
           +      N  R L       S    ++ Q   AEL  +I    +E    L        + 
Sbjct: 180 KLARTQDNLDRALDVEREARSRLRPLKRQAEAAELHERIERQSLEARWELGRDAARATRL 239

Query: 219 ENFPHIKLSLTGFLDGKFDQS-----FCALKEEYAKKL-FDGRKMDSMSRR 263
           E     + ++ G    + +           +EE  + L     + + +S R
Sbjct: 240 E-LAQAEEAVRGARARRDEAEQALSGVAKRREEAEQALQARSEQREELSGR 289


>gi|256838545|ref|ZP_05544055.1| SMC domain-containing protein [Parabacteroides sp. D13]
 gi|256739464|gb|EEU52788.1| SMC domain-containing protein [Parabacteroides sp. D13]
          Length = 693

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
           + IK + IS FRN+    + F     + +G N  GK+N+L AI  
Sbjct: 12 NMYIKEIKISNFRNFRDASVPFHEGVNVIIGHNNTGKSNLLRAIGL 57


>gi|19553265|ref|NP_601267.1| chromosome segregation ATPase [Corynebacterium glutamicum ATCC
           13032]
 gi|62390901|ref|YP_226303.1| chromosome segregation ATPase [Corynebacterium glutamicum ATCC
           13032]
 gi|21324835|dbj|BAB99458.1| Chromosome segregation ATPases [Corynebacterium glutamicum ATCC
           13032]
 gi|41326240|emb|CAF20402.1| Chromosome segregation ATPase [Corynebacterium glutamicum ATCC
           13032]
          Length = 1155

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 30/209 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGAGDRKPLGRAEVTLTIDNSDGALPIEYTEVSVTRRMFRDGASEYEINGAKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + I      +  I      ERR +++     +  R        E
Sbjct: 121 LMDIQELLSDTGIGREMHIMVGQGKLAEILESRPEERRAYIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
           +      R L     +      +  ++A+
Sbjct: 176 KA----QRKLQGMQVNLDRLQDLTHELAK 200


>gi|301779748|ref|XP_002925291.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of
           chromosomes protein 2-like [Ailuropoda melanoleuca]
          Length = 1259

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 101/281 (35%), Gaps = 36/281 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKM 257
           + ++    L +   D+S   LKE      +  +KL +  K 
Sbjct: 233 LYIAYQFLLAEDTKDRSAEELKEMQDKVVKLQEKLSENDKK 273


>gi|145296029|ref|YP_001138850.1| hypothetical protein cgR_1952 [Corynebacterium glutamicum R]
 gi|140845949|dbj|BAF54948.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1155

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 30/209 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGAGDRKPLGRAEVTLTIDNSDGALSIEYTEVSVTRRMFRDGASEYEINGAKAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++D         + + + I      +  I      ERR +++     +  R        E
Sbjct: 121 LMDIQELLSDTGIGREMHIMVGQGKLAEILESRPEERRAYIEEAAGVLKHR-----RRKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
           +      R L     +      +  ++A+
Sbjct: 176 KA----QRKLQGMQVNLDRLQDLTHELAK 200


>gi|238910207|ref|ZP_04654044.1| ATP binding protein [Salmonella enterica subsp. enterica serovar
          Tennessee str. CDC07-0191]
          Length = 465

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+AI  
Sbjct: 1  MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTAVLDAIRL 45


>gi|289578457|ref|YP_003477084.1| chromosome segregation protein SMC [Thermoanaerobacter italicus
           Ab9]
 gi|297544733|ref|YP_003677035.1| chromosome segregation protein SMC [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528170|gb|ADD02522.1| chromosome segregation protein SMC [Thermoanaerobacter italicus
           Ab9]
 gi|296842508|gb|ADH61024.1| chromosome segregation protein SMC [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 1196

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60
           + +K L +  F+++A  + L F+   T  VG NG GK+NI +AI  +      +  R + 
Sbjct: 1   MYLKKLELQGFKSFADKVTLNFEKGVTAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS +     F      ++  +G        + +  +  RS      IN    R
Sbjct: 61  LEDVIFAGSENRKPLGFCEINLTLDNSDGYLPFDYTEVVITRKIFRSGESEFFINKTPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           + D     L                +D I S    +RR+  +  +     R+
Sbjct: 121 LRDIYELFLDTGVGKEGYSIIGQGRIDEILSAKPEDRRQIFEEAIGISKYRY 172


>gi|153869104|ref|ZP_01998792.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152074341|gb|EDN71205.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 446

 Score = 64.5 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 26/45 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +KI  + I  FR    L L  D Q T+ VG+N  GKT IL+AI+ 
Sbjct: 1  MKISHITIENFRAIKKLDLPLDPQLTVLVGNNAAGKTTILDAIAV 45


>gi|295402808|ref|ZP_06812744.1| SMC domain protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975154|gb|EFG50796.1| SMC domain protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 648

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 58/389 (14%), Positives = 131/389 (33%), Gaps = 73/389 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L I  F+ ++   + F+    + +G N  GKT I++AI ++      R  S    
Sbjct: 1   MYISKLYIKNFKCFSEFEIEFNEGLNVIIGSNNSGKTTIIKAIEYIFN----RSVSKTPS 56

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F      ++    +   +    + +D       +   + ++       L   +
Sbjct: 57  I----DDFNKELDDLDNPPEIIISATLRSSHNDTLEDKAIVASWLTKLESPWEATLTYKY 112

Query: 125 LVPSMD-----RIFSGLSMERRRFLDRMVFA---IDPRHRRRMIDFERLMRGRNRLLTEG 176
            +P  +             ++ R+     F    +   +  ++ +  R            
Sbjct: 113 FLPESNWKEYKGAIKEAQNDKERWEILENFLKKYVSRIYGGKIENKIRA--------ETE 164

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK- 235
           Y +   C +++A + ++  K+   R  ++  L +       K+N P+ + S    +  K 
Sbjct: 165 YLEKIHCETLDA-LRDVESKMFTGRNPLLKQLLTHF-----KDNEPNNEKSSDSLISSKQ 218

Query: 236 -FDQSFCALKEEYAKKLFDG-----------------------RKMDSMSRRTLIGPHRS 271
            F +    + E    +L                           + D +S   LI  + +
Sbjct: 219 EFQKYSNKVVENIVSRLNRKEILRFAQNTGAAIGGEPDIDGRLEEADVLSILRLIIRNET 278

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI-SNTTGFA----PILLLDEISAHL 326
            + +   +  +       G   ++ + + LA  ++I S   G      PILL++E  AHL
Sbjct: 279 GIEIPIINNGL-------GYNNLIYMSLILAKFKMITSKEYGENAKTFPILLIEEPEAHL 331

Query: 327 DEDKRNALFRIVTD------IGSQIFMTG 349
               +    + + +      +  QIF+T 
Sbjct: 332 HPALQYNFLKFLKEEIDKQTLSRQIFITT 360


>gi|294496455|ref|YP_003542948.1| SMC domain protein [Methanohalophilus mahii DSM 5219]
 gi|292667454|gb|ADE37303.1| SMC domain protein [Methanohalophilus mahii DSM 5219]
          Length = 889

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA----S 60
          ++ K L +   R+Y  L + F+   T+  G NG GK+++LEA      G   R       
Sbjct: 1  MRFKRLKVKNIRSYNDLEIDFNDGVTVVSGVNGSGKSSLLEACFVGLFG--HRGIPKDFV 58

Query: 61 YADVTRIGSPSFF 73
           AD+ R G     
Sbjct: 59 LADLVRKGCEDAA 71


>gi|49481943|gb|AAT66683.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A65]
 gi|49481955|gb|AAT66689.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A74]
          Length = 573

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 93/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           +  A++ I +                   +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCCQKCAEVGIDVSEGMVVLRRDILANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   ++ E+   L           +           LD    A        +  +  +
Sbjct: 112 KLVTTAILREVGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGA---EMAEALARYRAV 166

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
                 L+ +        S  E QMA         R++++       +E    E     +
Sbjct: 167 YEQHEALVKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQASLELGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + A+++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYSAIQKSYEALSGEGRGLDSI 248


>gi|73971500|ref|XP_867410.1| PREDICTED: similar to Structural maintenance of chromosome 2-like 1
           protein (Chromosome-associated protein E) (hCAP-E)
           (XCAP-E homolog) isoform 2 [Canis familiaris]
          Length = 278

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 102/286 (35%), Gaps = 36/286 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNSRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKIMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKMDSMSR 262
           + ++    L +   ++S   LKE      +  +KL +  K     R
Sbjct: 233 LYIAYQFLLAEDTKERSAEELKEMQDKVVKLQEKLSENDKKIKALR 278


>gi|85374547|ref|YP_458609.1| chromosome segregation protein [Erythrobacter litoralis HTCC2594]
 gi|84787630|gb|ABC63812.1| chromosome segregation protein [Erythrobacter litoralis HTCC2594]
          Length = 1140

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 81/230 (35%), Gaps = 36/230 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++I+ L +S F+++     L  +   T  VG NG GK+N+LEAI ++      +  R   
Sbjct: 1   MQIRRLKLSGFKSFVEPAELRIEPGLTGVVGPNGCGKSNLLEAIRWVMGENSPKSMRSGG 60

Query: 61  YADVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             DV   G+ +             V+      D++ ++E     + R   +N   +R  D
Sbjct: 61  MEDVIFAGTETRPPRDFAEVVLQAVDDDGEELDVTRRIERGAGSAYR---VNGHDVRAKD 117

Query: 115 --------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF----AIDPR-------- 154
                       H         + ++ +   +ERR  L+         +  R        
Sbjct: 118 VALTFADAATGAHSPALVSQGKIAQVIAAKPIERRMMLEEAAGIAGLHVRKRDAESKLRS 177

Query: 155 ---HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
              +  R+ D    +  +   L      +   + +  Q+A    ++  AR
Sbjct: 178 TEKNLERLEDLMAGLDSQMASLRRQAKQAERYTKLTDQIAIAEARLLYAR 227


>gi|291563452|emb|CBL42268.1| condensin subunit Smc [butyrate-producing bacterium SS3/4]
          Length = 1185

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 111/288 (38%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60
           + +K + +  F+++A+ +   F    T  VG NG GK+N+ +A+ ++      +  R +S
Sbjct: 1   MYLKSIEVQGFKSFANKIIFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQKVKQLRSSS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       F      ++  +    I    + +  R  RS      +N    R
Sbjct: 61  MQDVIFSGTEMRKPQGFAYVAITLDNSDHQLAIDYDEVTVSRRIYRSGESEYLLNGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   +RR   D     +  + R+ +   +
Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGRPEDRRELFDEAAGIVKFKRRKAIAQ-K 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM----INALSSLIM 213
           +L   +  L+      S   S +E Q+      AE   +    R E+    +N   + + 
Sbjct: 180 KLEDEKQNLVRV----SDILSELEKQVGPLAKQAETAKEYLRLREELKRFDVNLFLADLK 235

Query: 214 EY-VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               QK      + ++TG ++ +   +  ALKEEY +     R +D  
Sbjct: 236 AIEDQKLELTRKEHTVTGDME-ESKAAAEALKEEYDRISEAVRVLDEK 282


>gi|78357538|ref|YP_388987.1| hypothetical protein Dde_2495 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219943|gb|ABB39292.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 630

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 132/420 (31%), Gaps = 81/420 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++  L I +++N     L FD      +FVG NG GK+N+ EA+  +     FR     
Sbjct: 1   MRLTSLYIGQYKNLRDFSLSFDGDSFIDVFVGKNGTGKSNLFEALIEI-----FRHLVEF 55

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D  +      +     ++G       +    T   +  + +    +   V+   + H   
Sbjct: 56  DRDKAPCDFNYRIGFEIDGKATEIGWNSGKLTIGGKERKTIGKTPLPDNVLIYYSGHNDT 115

Query: 123 SW-LVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRM-------------IDF----- 162
              LV   +  F    ++R  F +   F  I P ++  +               F     
Sbjct: 116 VANLVEQYEEAFRKR-IKRADFDEARYFIGIGPDYKALLLAVLLMQPDTCKARQFICQKL 174

Query: 163 --------ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
                    ++   R     +  FD       +      G+         ++ L   I  
Sbjct: 175 GIATVALEAKVALERPAYAADSRFDIELNDETDRYWKPEGIT-----ATFLDRLHGCINT 229

Query: 215 YV-----QKENFPHIKLSLTGFLDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRRTLIGP 268
                   +  F      +  F   K  Q F  L  +E  ++  + + +  ++  T+   
Sbjct: 230 ATGSPVRSEGYFAEPDRYILYFDIAKIRQEFDDLSPQELFRQFDNLKTLGMLTEITIP-- 287

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
               L +       TIAH S G+ + V +    +   L  +      I LLDE  + L  
Sbjct: 288 ----LQLT-GGVDATIAHFSDGQFQSVYI---YSIVELFKD---RNCITLLDEPDSFLHP 336

Query: 329 DKRNALFRIVTDIGSQIF-MTGTDKSVFDSL-------------NETAKFMRISNHQALC 374
           + +    +       Q+F +T T       L                 KF  I  +QA C
Sbjct: 337 EWQFDFLK-------QVFEITDTTAKNNHVLMSSHSAVTLIPHDKTKIKFFDIKGNQANC 389


>gi|226226181|ref|YP_002760287.1| exonuclease [Gemmatimonas aurantiaca T-27]
 gi|226089372|dbj|BAH37817.1| exonuclease [Gemmatimonas aurantiaca T-27]
          Length = 800

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/280 (18%), Positives = 100/280 (35%), Gaps = 27/280 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYAD 63
           +++  L++  FR +A  R+ F    T  +G NG GK+ ILEAI++   G    R    + 
Sbjct: 1   MRLHSLHLVNFRQHADTRIDFALGLTGIIGPNGSGKSTILEAIAWSLYGNSAARGNKDS- 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV---------VD 114
             R  S        RVE +  LA    ++      +   L   +  I             
Sbjct: 60  -IRRLSVEDVRAPVRVELVFELAGHRYRVARSLSGAECFLDDAEQPIASTVTGVSEFMQR 118

Query: 115 ELNKHLRISWLVP-----SMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFERLMRG 168
            L       +         +D + +    ER RFL R++ +      +  + +  R +  
Sbjct: 119 RLGMTRSEFFHTYFTGQKELDVMSALGPAERARFLSRVLGYDRISGAQEFVRERRRTLAA 178

Query: 169 RNRLLTEGYFDSS--WCSSIEAQ----MAELGVKINIARVEMINALSSLIMEYVQKENFP 222
               L +G  D    W +  +A+    MA +       + ++  AL   ++   +     
Sbjct: 179 EINGLRQGMSDPEAIWRAVSDAEARLAMATVRASEAEQQRQVAVALLETLVPQWRDVQAQ 238

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
             +L L   L  +   +   L           R++DS+++
Sbjct: 239 RERLQL---LQAECRVTEGELLARVRDAERLTRELDSVAQ 275



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 70/178 (39%), Gaps = 15/178 (8%)

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           AE G +    R E +  L     +    +        +   L+ +       +   +  +
Sbjct: 619 AEQGRRELARRQEALEGLE---RDRRLHDELDRAFTDIRTDLNVQLRPELADIASGFLAE 675

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
           L DGR                D  +   +  +     S GE+ +  + + LA +++I++ 
Sbjct: 676 LTDGRYKSLE--------FDEDYRLLVLEDEVRKPVISGGEEDLCNLVLRLAISQMIADR 727

Query: 311 TGFAP-ILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNETAKF 364
           TG A  +L+LDE+   LDE++R  +  ++  +     Q+ +    + V D L++  + 
Sbjct: 728 TGQAFSLLILDEVFGSLDENRRTNVVELLRHLHDRFEQVIVITHIEQVRDGLDQVVQV 785


>gi|295094865|emb|CBK83956.1| RecF/RecN/SMC N terminal domain. [Coprococcus sp. ART55/1]
          Length = 220

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 28/220 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + ++ F+++A+ +   F+   T  VG NG GK+N+ +A+   L     +  R + 
Sbjct: 1   MYLKSIEVNGFKSFANKIVFKFNHGITCIVGPNGSGKSNVADAVRWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+        A V      +D S+ ++  +    R +         IN  V R
Sbjct: 61  MEDVIFSGTQLRKPQGSAYVAITLDNSDHSLPIDYNEVTVARRVYRSGESEYLINGTVSR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D  +                   +++I +G   ERR   D     +    ++     E
Sbjct: 121 LKDVYSLFFDTGIGKEGYSIIGQGQIEKILNGKPEERRELFDEAAGIVK--FKKNKAAAE 178

Query: 164 RLMR-GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
           + +   R+ L             +E Q+  L  +   AR 
Sbjct: 179 KSLEAERDNLSRVN----DILKELEKQVGPLKEQSETARK 214


>gi|150005010|ref|YP_001299754.1| putative antigen PgaA [Bacteroides vulgatus ATCC 8482]
 gi|294778966|ref|ZP_06744381.1| RecF/RecN/SMC N-terminal domain protein [Bacteroides vulgatus
          PC510]
 gi|149933434|gb|ABR40132.1| conserved hypothetical protein, putative antigen PgaA
          [Bacteroides vulgatus ATCC 8482]
 gi|294447124|gb|EFG15709.1| RecF/RecN/SMC N-terminal domain protein [Bacteroides vulgatus
          PC510]
          Length = 445

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + +K + I  FR + +  +      T+F+G NG GKT++L AI +
Sbjct: 1  MILKKITIENFRCFKNYEVDLTPGITVFIGKNGAGKTSLLNAIRY 45


>gi|323484229|ref|ZP_08089598.1| hypothetical protein HMPREF9474_01349 [Clostridium symbiosum
           WAL-14163]
 gi|323402471|gb|EGA94800.1| hypothetical protein HMPREF9474_01349 [Clostridium symbiosum
           WAL-14163]
          Length = 641

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 85/219 (38%), Gaps = 26/219 (11%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           + +K + I  F+++A+  L  F    T  VG NG GK+N+ +A+   L   R    R  S
Sbjct: 1   MYLKSIEIQGFKSFANRILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGGS 60

Query: 61  YADVTRIGS-----PSFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       F      ++  +    I    + +  R  RS     +IN    R
Sbjct: 61  MQDVIFSGTQMRKPQGFAYVAITLDNSDHKLPIGFDEVTISRRLYRSGESEYKINGSTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + RR++I  +
Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFK-RRKLIAQK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
           +L   +  LL      S   + +E Q+  L  +   AR 
Sbjct: 180 KLEDEKQNLLRV----SDILAELEKQVGPLARQSEAARE 214


>gi|49481957|gb|AAT66690.1| DNA repair and genetic recombination protein [Geobacillus kaue]
          Length = 573

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 87/271 (32%), Gaps = 39/271 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGL------ADISIKLETR--------DDRSVRCLQINDVVI-- 110
            G+         +   E        A++ I                     +IN  ++  
Sbjct: 57  FGAEKAEIEGLFLLDDERHPCCQKCAEVGIDASEGMVVLRRDILANGKSVCRINGKLVTT 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+   L           +           LD    A        +  +  +     
Sbjct: 117 AVLREIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGAET---AEALARYRAVYEQHE 171

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
            L  +        S  E QMA         R++++       +E    E     +L    
Sbjct: 172 ALAKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQAAIETGEDERLMEEK 218

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                F + + A+++ Y     +GR +DS+ 
Sbjct: 219 VRIVNFQKIYEAIQKSYGALAGEGRGLDSIR 249


>gi|85014499|ref|XP_955745.1| chromosome segregation protein [Encephalitozoon cuniculi GB-M1]
 gi|19171439|emb|CAD27164.1| CHROMOSOME SEGREGATION PROTEIN OF THE SMC FAMILY [Encephalitozoon
           cuniculi GB-M1]
          Length = 1017

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 9/120 (7%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + IK + +  FR++   + +       I VG NG GK++I+ A+ F+  G      S   
Sbjct: 1   MHIKQIRLKNFRSFRDEVVVPLSEHTNIIVGRNGSGKSSIVSAVHFVLCGEKHSCESRTG 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +   GS        R    EG  +I      ++  S R   +   V    DE     RI 
Sbjct: 61  LIHEGS--------RAMEEEGSVEIVFCDGLQEAGSGREFSVKRTVSVKKDEYMVDNRIV 112



 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 68/193 (35%), Gaps = 26/193 (13%)

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            S +              R  M   L  L  +  +  +F      L    +     +   
Sbjct: 817 LSVVNRAAISQWENYMEQRDSMKRRLEDLKCDKRRILDFIAE---LDSKKEDTMKNAISL 873

Query: 243 LKE---EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           +KE   E   +L DG   +  S    IG            + I+    S G++ VV + +
Sbjct: 874 VKEGFSELYSRLTDGGTAELYSYENGIGIK--------IGENISANLLSGGQKAVVALCL 925

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD----IGSQIFMTGTDKSVF 355
             +           +P+ +LDEI A+LD   R  +  ++ +     G+Q  +T   K + 
Sbjct: 926 IFS-----MQRVSPSPLYVLDEIDANLDVQSRERVSMLIKEMSTSCGNQFIITTFRKEL- 979

Query: 356 DSLNETAKFMRIS 368
             L+  +K++ + 
Sbjct: 980 --LSCGSKYLSVE 990


>gi|319938299|ref|ZP_08012696.1| chromosome segregation ATPase [Coprobacillus sp. 29_1]
 gi|319806592|gb|EFW03250.1| chromosome segregation ATPase [Coprobacillus sp. 29_1]
          Length = 981

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 92/282 (32%), Gaps = 43/282 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A    + F    T  VG NG GK+NI +A+   L     +  R ++
Sbjct: 1   MHLKRIELHGFKSFADKSVIEFQPGITGIVGPNGCGKSNISDAVRWVLGEQSVKSLRGSN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEG-----LADISIKLETRDDRSVRCLQINDVVI 110
            ADV   GS      S        +  +        ++ I        +     IN    
Sbjct: 61  MADVIFNGSEDRKPQSLAEVTLVFDNEDRFMNFDYNEVEITRRLYRQNNEAEYLINKEPC 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRM 159
           R + ++   +  + L      I S             ERR   +    V     R    +
Sbjct: 121 R-LKDIVDLIMDTGLGRDSLSIISQGNISTFADSKPEERRGMFEEAAGVAKYKKRKLESI 179

Query: 160 IDFERL-------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
              ER              +  +   L      +     ++ Q+  + V + +     I 
Sbjct: 180 RKLERTKDNLDRVEDICLELEKQIAPLKRQKEKAEVYLELKDQLQSIEVSVLVK---EIE 236

Query: 207 ALSSLIMEY-VQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            LS  + +  V  +     K+++ G +     Q+    K+ Y
Sbjct: 237 NLSESLKDLNVSLDFLDKEKVTIDGQILLNEQQNETLKKKMY 278


>gi|289628784|ref|ZP_06461738.1| putative ATP-dependent endonuclease of the OLD family
          [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330870251|gb|EGH04960.1| putative ATP-dependent endonuclease of the OLD family
          [Pseudomonas syringae pv. aesculi str. 0893_23]
          Length = 711

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
          + I  L +  +RN+    +VF+      +G+NG GKTN+  A
Sbjct: 1  MHISRLQLVNYRNFKCANVVFNKGVNTIIGENGSGKTNLFRA 42


>gi|295696067|ref|YP_003589305.1| chromosome segregation protein SMC [Bacillus tusciae DSM 2912]
 gi|295411669|gb|ADG06161.1| chromosome segregation protein SMC [Bacillus tusciae DSM 2912]
          Length = 1192

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 99/293 (33%), Gaps = 42/293 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + IK L IS F+++A    +      T  VG NG GK+NI EA+ ++      R  R A 
Sbjct: 1   MHIKRLEISGFKSFADRTEIELPPGITAVVGPNGSGKSNIAEALRWVLGEQSARSLRGAR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS      ++      ++  +G   +    I +  R  RS     ++N    R
Sbjct: 61  MEDVIFAGSDGRKPINYCEVSLTLDNEDGRLPLDYREITVTRRLYRSGESEYRLNRQTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161
           + D         L K          +D + S    +RR   +    +     R R  +  
Sbjct: 121 LKDVIDLFLDTGLGKEAYSMIGQGRIDEVLSNRPEDRRGIFEDAAGIVKFKARKREALKK 180

Query: 162 FE-------------RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
            E               +  +   L           +++ + A +  ++ + R+E     
Sbjct: 181 LEDTKANMMRVEDVIHELTEQATPLAAEAEREQQYRALQEEAATIAGRLAVHRIE----- 235

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
               MEY + ++                  +   L++   + +   R+++ + 
Sbjct: 236 -QTHMEYQRAQDEAVKAEQAAAREAAALADAEAHLEQRRLELVRQDRELEEIQ 287


>gi|330885759|gb|EGH19908.1| putative ATP-dependent endonuclease of the OLD family
          [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 711

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
          + I  L +  +RN+    +VF+      +G+NG GKTN+  A
Sbjct: 1  MHISRLQLVNYRNFKCANVVFNKGVNTIIGENGSGKTNLFRA 42


>gi|299132455|ref|ZP_07025650.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gi|298592592|gb|EFI52792.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 588

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 116/385 (30%), Gaps = 64/385 (16%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            I  L+I  FR   +L         + +G   VGKT IL+AI  L         S  D  
Sbjct: 12  AIYRLSIERFRGVKTLSWSPVRGVNVILGGGDVGKTTILDAIGLLLSPVNATNLSDTDYH 71

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                + F   A +    G                     + +      E +        
Sbjct: 72  ARNIDAGFVIEAVMSLPPG-----------------SGINDQLKPSWPWEWSGADLSVPN 114

Query: 126 VPSMDRIFSGLSMERRRF-------LDRMVFAID--PRHRRRMIDFERLMRGRNRLLTEG 176
                +  +G  + R R        L   +   D               +R    L+   
Sbjct: 115 TDDDSK-PAGEPVYRLRVRGTEDLELAYEIVQPDGSTDFFPV------ALRRSIGLVRLS 167

Query: 177 YFDSSWCSSIEAQMAELGVKINIA--RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
             D +       Q + L   ++    R  M + L                K  +   L  
Sbjct: 168 GDDRNDRDLRLVQGSALDRLLSDKGLRSRMASEL---------------AKSDVKDELTS 212

Query: 235 KFDQSFCALKEEYAKK-LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA-ITIAHGS--TG 290
           +  ++   L   + KK L DG  +     +   GP  + LI    D+  I +   S   G
Sbjct: 213 EAKKALEDLDTAFNKKSLPDGLDLAITGGQ---GPSIASLIGLTADRNGIQLPLASWGAG 269

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
            +++  + I            G API+++DE+   L+  ++  L   +    SQ+F+T  
Sbjct: 270 TRRLSALAIA-------EQNQGEAPIMIVDEVERGLEPYRQRTLVEKLQAGKSQVFVTTH 322

Query: 351 DKSVFDSLNETAKFMRISNHQALCI 375
             +   + ++   +      Q   +
Sbjct: 323 SPAAISAASKAGLWYVDHMGQIGPL 347


>gi|240280367|gb|EER43871.1| Spr18 protein [Ajellomyces capsulatus H143]
 gi|325096563|gb|EGC49873.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
          Length = 1160

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 78/263 (29%), Gaps = 21/263 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I  + + +F  Y S       +  + +G NG GK+ ++ AI   L  G     R    A+
Sbjct: 127 IVRVKLRDFVTYTSAEFSPGPRLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPAE 186

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKHLR 121
             + G           +G     +  I+       +     IN          EL K   
Sbjct: 187 FVKHGCEEATIEIELAKGRNHRENPVIRRTIVRKGNKSTFTINGKPSSKASVLELAKSFS 246

Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           I        +P                      A  P+  +   D + L   + +LL   
Sbjct: 247 IQIDNLCQFLPQDKVAEFAALSPIELLHSTQRAAAGPQMLQWHEDLKSLRAEQKKLLAAN 306

Query: 177 YFDSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
             +    +++    +M    V+  + R      +   I    +    P  + ++  F + 
Sbjct: 307 AGEREQLANLVNRQEMQREDVQRMLQR----ARIQKKIAVLERSRPVPRYQEAVQAFKEA 362

Query: 235 K-----FDQSFCALKEEYAKKLF 252
           +       Q    L+ + A  L 
Sbjct: 363 QRARRTLQQEHDNLENQLAPALK 385


>gi|260886534|ref|ZP_05897797.1| hypothetical ATP-binding protein [Selenomonas sputigena ATCC
          35185]
 gi|330839624|ref|YP_004414204.1| SMC domain protein [Selenomonas sputigena ATCC 35185]
 gi|260863677|gb|EEX78177.1| hypothetical ATP-binding protein [Selenomonas sputigena ATCC
          35185]
 gi|329747388|gb|AEC00745.1| SMC domain protein [Selenomonas sputigena ATCC 35185]
          Length = 429

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK L +  FR +  L + F   +T+ +G NG GK++IL+A++ 
Sbjct: 1  MYIKRLQLENFRCFEQLTIDFPKDYTVLIGGNGAGKSSILDAVAI 45


>gi|150401409|ref|YP_001325175.1| chromosome segregation protein SMC [Methanococcus aeolicus
           Nankai-3]
 gi|150014112|gb|ABR56563.1| chromosome segregation protein SMC [Methanococcus aeolicus
           Nankai-3]
          Length = 1191

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 36/177 (20%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFR 57
           MTN   +  +++  F+++ +++L   +  T  +G NG GK+NI++ I F+   +  +  R
Sbjct: 1   MTN---LSEIHLKNFKSFKNVKLKIPSGFTAILGPNGSGKSNIIDGICFVLGKTSAKSLR 57

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND---------- 107
              + ++         + +A V      +D  I +++      R +++            
Sbjct: 58  AGRFNELITYHKNKR-ADYAEVSLFFDNSDRKIPIDSDKIGISRKVKLKGDNNYYLIWYE 116

Query: 108 -----------VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
                        I+            L        L   + R+      ERR+ +D
Sbjct: 117 ENKDNKRVEKRKKIKKSTVIDIFNKMSLCGEGLNIILQGDLIRLIEMSPRERRKTID 173


>gi|325959801|ref|YP_004291267.1| SMC domain-containing protein [Methanobacterium sp. AL-21]
 gi|325331233|gb|ADZ10295.1| SMC domain protein [Methanobacterium sp. AL-21]
          Length = 900

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +  F+++   ++ FD   TI +G NG GK++ILEA+SF +  +         +
Sbjct: 1   MIIENLEMKNFKSHKDTKIDFDTGITIIMGGNGAGKSSILEAVSF-ALFKQHSSKKIEQL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNK 118
             +G+                  + IKL+   + R+ R  +           L K
Sbjct: 60  ITLGN--------------VKNKLYIKLDFKSNGRTYRVTRERGKTGSKASILIK 100



 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 56/156 (35%), Gaps = 16/156 (10%)

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS-------DLIVDYCDK 280
           L    D            ++++ L +    D   +      +         D+ V     
Sbjct: 748 LEYIRDLYGKDGVQKDLRDFSRPLIEQNTRDFFEKFNFE--YSDIRLDNEYDVTVYGPAG 805

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
              +   S GE+  V + + L   + +  + G   +++LDE + HLD  +R  L  ++  
Sbjct: 806 ESNLDMISGGEKIAVALALRLGITKTL--SGGSLELVMLDEPTIHLDAYRRQELIDLLKR 863

Query: 341 IGS--QIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
           +    Q+ +   D  + D+ +     +++   + + 
Sbjct: 864 MSIIPQMIIVTHDSDLEDAADN---IIKVEKDEGIS 896


>gi|213405963|ref|XP_002173753.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212001800|gb|EEB07460.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 1137

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +++  F  + +L+L F  +    +G NG GK+ IL  +      +     R A+   
Sbjct: 97  LQSIHLINFMCHDALKLDFGPRINFIIGHNGSGKSAILTGLVVCLGAKAASTNRGANLKT 156

Query: 64  VTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           + + G S +  S      G E             +R+VR    ND+ IR  D
Sbjct: 157 LIKEGRSQARVSIVISNRGPEAFRHDVYGNFITIERTVRRDSANDLKIRAQD 208


>gi|52549794|gb|AAU83643.1| chromosome assembly protein homolog [uncultured archaeon
          GZfos32E7]
          Length = 616

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASY 61
            I +K + +  F +Y   R+       +  G NG GK++IL AIS  L      R    
Sbjct: 9  PDIWLKEIILENFMSYEYARIPLKPGLNLISGPNGAGKSSILLAISVALGQIYTERSRRL 68

Query: 62 ADVTRIGSP-SFFSTFARVEGMEGLADIS 89
           D+ R G      +     E   G   IS
Sbjct: 69 RDLIRRGKELGRITLVFDNEAKNGKRPIS 97


>gi|167037692|ref|YP_001665270.1| chromosome segregation protein SMC [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116107|ref|YP_004186266.1| chromosome segregation protein SMC [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856526|gb|ABY94934.1| chromosome segregation protein SMC [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319929198|gb|ADV79883.1| chromosome segregation protein SMC [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 1196

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60
           + +K L +  F+++A  + L F+   T  VG NG GK+NI +AI  +      +  R + 
Sbjct: 1   MYLKKLELQGFKSFADKVTLDFEKGVTAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS +     F      ++  +G        + +  +  RS      IN    R
Sbjct: 61  LEDVIFAGSENRKPLGFCEINLTLDNSDGYLPFDYTEVVITRKIFRSGESEFFINKTPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           + D     L                +D I S    +RR+  +  +     R+
Sbjct: 121 LKDIYELFLDTGVGKEGYSIIGQGRIDEILSAKPEDRRQIFEEAIGISKYRY 172


>gi|284032685|ref|YP_003382616.1| chromosome segregation protein SMC [Kribbella flavida DSM 17836]
 gi|283811978|gb|ADB33817.1| chromosome segregation protein SMC [Kribbella flavida DSM 17836]
          Length = 1181

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/217 (19%), Positives = 80/217 (36%), Gaps = 30/217 (13%)

Query: 11  NISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYADVTR 66
            +  F+++AS   + F+   T  VG NG GK+N+++A++++      +  R     DV  
Sbjct: 2   TLRGFKSFASATTMNFEPGITCIVGPNGSGKSNVVDALAWVMGEQGAKSLRGGKMEDVIF 61

Query: 67  IGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIRVVDE-- 115
            G+              ++  +G   I     T      R      QIN    R++D   
Sbjct: 62  AGTSGRSPLGRAEVVLTIDNTDGALPIEYAEVTISRTMFRNGGSDYQINGQNCRLLDVQE 121

Query: 116 ------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                 + + + +      +D I       RR F++     +  R        E+ +  R
Sbjct: 122 LLSDSGIGREMHVIVGQGQLDSILRATPEGRRGFVEEAAGVLKHR-----KRKEKAI--R 174

Query: 170 NRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEM 204
               TEG  +      + I  Q+  LG +  +AR  +
Sbjct: 175 KLESTEGNLNRLGDLITEIRRQLKPLGRQAEVARRAV 211


>gi|291456156|ref|ZP_06595546.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
 gi|291382228|gb|EFE89746.1| conserved hypothetical protein [Bifidobacterium breve DSM 20213]
          Length = 628

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGF 56
          + I  L +  F  +  L L F +     VGDN  GKT +L A+ +L     +G 
Sbjct: 1  MYISHLQLRNFMCHHELDLDFGSGVNYLVGDNNSGKTTVLRALQYLHDGVTKGH 54


>gi|326389506|ref|ZP_08211073.1| chromosome segregation protein SMC [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325994511|gb|EGD52936.1| chromosome segregation protein SMC [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 1196

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60
           + +K L +  F+++A  + L F+   T  VG NG GK+NI +AI  +      +  R + 
Sbjct: 1   MYLKKLELQGFKSFADKVTLNFEKGVTAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS +     F      ++  +G        + +  +  RS      IN    R
Sbjct: 61  LEDVIFAGSENRKPLGFCEINLTLDNSDGYLPFDYTEVVITRKIFRSGESEFFINKTPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           + D     L                +D I S    +RR+  +  +     R+
Sbjct: 121 LKDIYELFLDTGVGKEGYSIIGQGRIDEILSARPEDRRQIFEEAIGISKYRY 172


>gi|307264840|ref|ZP_07546402.1| SMC domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306920098|gb|EFN50310.1| SMC domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 810

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60
           + +K L +  F+++A  + L F+   T  VG NG GK+NI +AI  +      +  R + 
Sbjct: 1   MYLKKLELQGFKSFADKVTLNFEKGVTAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS +     F      ++  +G        + +  +  RS      IN    R
Sbjct: 61  LEDVIFAGSENRKPLGFCEINLTLDNSDGYLPFDYTEVVITRKIFRSGESEFFINKTPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           + D     L                +D I S    +RR+  +  +     R+
Sbjct: 121 LKDIYELFLDTGVGKEGYSIIGQGRIDEILSARPEDRRQIFEEAIGISKYRY 172


>gi|320547231|ref|ZP_08041524.1| SMC family domain protein [Streptococcus equinus ATCC 9812]
 gi|320448119|gb|EFW88869.1| SMC family domain protein [Streptococcus equinus ATCC 9812]
          Length = 1179

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 120/335 (35%), Gaps = 40/335 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A    + FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEMQGFKSFADKTTIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRD-DRSVRCLQINDVVIR 111
             DV   GS      ++      ++  +G    A  +I++E            I+   +R
Sbjct: 61  MPDVIFAGSENRKPLNYAQVVVNLDNSDGFIKDAKETIRVERHIYRNGDSEYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    +RR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFLDTGLGRDSFSVISQGRVEEIFNSKPEDRRAVFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVEM-INALSSLIMEY 215
             +      L       Y   +    +E Q A++  +   +   R ++ +N L   I   
Sbjct: 179 TKLNQTQDNLDRLDDIIYELEAQVKPLERQ-AQVAKEFIGLEDERKQLHLNILVEDIQAD 237

Query: 216 VQKENFPHIKLS-LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
           +++ +     LS +   L   ++Q     KE  A K    +  + M+++        D+ 
Sbjct: 238 MERLSELKEDLSEIKSNLSAYYEQRQKFEKENQALKEKRHQLSEEMAKKQA---GLVDIT 294

Query: 275 VDYCD----KAITIAHGSTGEQKVVLVGIFLAHAR 305
               D      +     S  E+K       LA  +
Sbjct: 295 KAISDFERQMDLLALESSQKEEKKQAASTKLAELK 329


>gi|281343296|gb|EFB18880.1| hypothetical protein PANDA_014755 [Ailuropoda melanoleuca]
          Length = 1197

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 101/281 (35%), Gaps = 36/281 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKM 257
           + ++    L +   D+S   LKE      +  +KL +  K 
Sbjct: 233 LYIAYQFLLAEDTKDRSAEELKEMQDKVVKLQEKLSENDKK 273


>gi|300711798|ref|YP_003737612.1| chromosome segregation protein [Halalkalicoccus jeotgali B3]
 gi|299125481|gb|ADJ15820.1| chromosome segregation protein [Halalkalicoccus jeotgali B3]
          Length = 890

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ + ++ F+ Y    L  +   ++  G NG GK+++LEA  F   G      +  +V
Sbjct: 1  MRIERVRLTNFKPYRDTDLRLERGVSVIHGLNGSGKSSLLEACFFALYGSSALDGTLEEV 60

Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99
             G              +G   +  ++    +R+
Sbjct: 61 ITNGEEECEIELWFTHA-DGEYHVERRVRLSGERA 94


>gi|238021871|ref|ZP_04602297.1| hypothetical protein GCWU000324_01775 [Kingella oralis ATCC 51147]
 gi|237866485|gb|EEP67527.1| hypothetical protein GCWU000324_01775 [Kingella oralis ATCC 51147]
          Length = 408

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 75/214 (35%), Gaps = 44/214 (20%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK L I  +++   L L       +  G NG GK+N++EA++F              V
Sbjct: 1   MKIKRLEIKGYKSIGHLVLEDVPSLMVLAGANGAGKSNLVEALAFFGA-----------V 49

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G  S    F       GL+DI   L  R+D  V    +  + + +   +  +L    
Sbjct: 50  IRYGLDSAIKDFG------GLSDI---LPKRNDSEVSKEMLLKIEVNLNSAIFSYLSKLR 100

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                + I                          +     ++   N  +       +  S
Sbjct: 101 FSEDGNFIIEEE----------------------LSKDNNIVFISN--IENTKEAEAILS 136

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
             ++ M EL  KI  AR ++   L++   E +++
Sbjct: 137 EYKSNMNELANKIKEARSDVAQYLNNHAYETLKE 170


>gi|15898789|ref|NP_343394.1| hypothetical protein SSO1994 [Sulfolobus solfataricus P2]
 gi|13815272|gb|AAK42184.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
          Length = 328

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I  F++Y      F+ + +I VG NG GKTN+++A SFL               R
Sbjct: 2   IKRLKIKNFKSYRDSEFEFE-KVSIVVGPNGSGKTNLVDAFSFLKQLIRPLSYPPYPFIR 60

Query: 67  IG--------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELN 117
            G                  ++G     D   ++     +  + +   +   +     + 
Sbjct: 61  WGDYKNVVFMQDENLDISFEIDGEYKGKDYHYEISLNKLQIKKEIINFDSYSMERRGNVI 120

Query: 118 KHLRISWLVPSMDRIFS 134
           ++      +P    +F+
Sbjct: 121 RYENKEMTIPDNLSVFN 137


>gi|324500675|gb|ADY40310.1| Structural maintenance of chromosomes protein 3 [Ascaris suum]
          Length = 1202

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASY 61
           + IK + IS FR+Y    +     +H +FVG NG GK+N   AI F+   +         
Sbjct: 1   MHIKQVRISGFRSYRDATISDLSPKHNVFVGRNGSGKSNFFFAIEFVLSDKFSSLSSKHR 60

Query: 62  ADVTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            ++   G     S       ++  +G        E    R V   + N
Sbjct: 61  RELIHEGIGEGSSVARVSIVLDNRDGRIVTEDTDEVVIGRQVSAKKDN 108



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQI 345
            S G++ VV + +  A      +    AP    DE+ A LD   R AL  ++ ++   SQ 
Sbjct: 1101 SGGQKTVVALALIFA-----IHKVDHAPFYFFDEVDAALDTQYREALADMIRELSEKSQF 1155

Query: 346  FMTGTDKSVFDS 357
              T     +  S
Sbjct: 1156 ITTTFRPELIAS 1167


>gi|284105821|ref|ZP_06386225.1| chromosome segregation protein SMC [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830108|gb|EFC34374.1| chromosome segregation protein SMC [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 1216

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 92/283 (32%), Gaps = 39/283 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASY 61
           +K+K L +S F+++   RL F    T  VG NGVGK+N+++AI   L     +  R    
Sbjct: 1   MKLKSLLVSGFKSFPEARLDFPQGITAVVGPNGVGKSNVVDAILWVLGEQSTKALRSERM 60

Query: 62  ADVTRIGSP--------------------SFFSTFARVEGMEGLADISIKLETRDDRSVR 101
            DV   G+                        S    +E + G  ++ +      D    
Sbjct: 61  EDVIFNGTESRKPLSMAEVSLVVSDVTNQELESLAGVMEALPGNKELMVTRRLYRD-GES 119

Query: 102 CLQINDVVIRVVDELNKHL--------RISWLVPSMDRIFSGLSMERRRFLDR--MVFAI 151
              IN +  R+ D     L               ++D+I SG   +RR F++    +   
Sbjct: 120 EYSINKIPCRLKDIRGLFLEARAGTKGHTVIEQGNIDQILSGSPQDRRTFIEEAAGIGRF 179

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI----ARVEMINA 207
             +    +   +   +   R+            +++ Q A+           AR   I  
Sbjct: 180 KKQKTEALNKLKTTNQNLTRVRDIIAEVEKQLRTLKRQ-AQQAEHYRKLKEEARAIEILL 238

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           L     +   +      +L+     + +       L   Y + 
Sbjct: 239 LKHDFEDLHHQRTHVESELARLESREAELLAEEARLMASYEEA 281


>gi|145592012|ref|YP_001154014.1| SMC domain-containing protein [Pyrobaculum arsenaticum DSM 13514]
 gi|145283780|gb|ABP51362.1| SMC domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 794

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 103/296 (34%), Gaps = 52/296 (17%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I+ + +  FR+Y    +V      I  G  G GKT++L A+ +   GR      R A  
Sbjct: 3   RIERIELENFRSYKGRHVVSLGDVNILWGRIGAGKTSLLYAVEYALYGRQLEVKERVAKL 62

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI------RVVDE 115
            D+  + +         +     L +I  +L  R D  +  ++IN   +      R ++E
Sbjct: 63  LDLINVEAHE-MRVSLVLSDGGRLLEIERRLGRRGDEKI-VVRINGEELRGREAERRLEE 120

Query: 116 LNK-----HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------------------ 152
           L       + R+ ++       F   + ++R      +F ID                  
Sbjct: 121 LLGADEDIYERLIYISHRTLEGFIYGTSQKRSLTVDRLFGIDVIDSVVRVVSSVEKSLLA 180

Query: 153 -----PRHRRRMIDFERLMRGR------NRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
                         ++ ++R         + L +   +       EA ++     +   R
Sbjct: 181 KAEELRGRLAAYEKYKEVIRRYGGFASVKKRLEDLTKEVETLKEREAALSRDAEDLARKR 240

Query: 202 VEMINALSSL---IMEYVQKENFPHIKLSLTGFLDGKFDQS-FCALKEEYAKKLFD 253
            E +  L      ++EY +  +   +++  +    G FDQS    L++   + + +
Sbjct: 241 AEHLAKLREHESMLLEYYKTRS--ELEVLESATEGGTFDQSTVERLRDALREAVEE 294


>gi|323692111|ref|ZP_08106357.1| chromosome segregation protein SMC [Clostridium symbiosum
           WAL-14673]
 gi|323503834|gb|EGB19650.1| chromosome segregation protein SMC [Clostridium symbiosum
           WAL-14673]
          Length = 1186

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/219 (23%), Positives = 85/219 (38%), Gaps = 26/219 (11%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           + +K + I  F+++A+  L  F    T  VG NG GK+N+ +A+   L   R    R  S
Sbjct: 1   MYLKSIEIQGFKSFANRILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGGS 60

Query: 61  YADVTRIGS-----PSFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       F      ++  +    I    + +  R  RS     +IN    R
Sbjct: 61  MQDVIFSGTQMRKPQGFAYVAITLDNSDHKLPIGFDEVTISRRLYRSGESEYKINGSTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + RR++I  +
Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFK-RRKLIAQK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
           +L   +  LL      S   + +E Q+  L  +   AR 
Sbjct: 180 KLEDEKQNLLRV----SDILAELEKQVGPLARQSEAARE 214


>gi|258611594|ref|ZP_05711569.1| chromosome segregation SMC protein [Listeria monocytogenes FSL
           N3-165]
 gi|258601612|gb|EEW14937.1| chromosome segregation SMC protein [Listeria monocytogenes FSL
           N3-165]
          Length = 604

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L         +    +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250


>gi|238923873|ref|YP_002937389.1| chromosome segregation protein SMC [Eubacterium rectale ATCC 33656]
 gi|238875548|gb|ACR75255.1| chromosome segregation protein SMC [Eubacterium rectale ATCC 33656]
          Length = 1186

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 36/287 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  R AS
Sbjct: 1   MYLKSLEVQGFKSFANKIVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAS 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A V      +D S+ ++  +    R +         IN    R
Sbjct: 61  MQDVIFAGTENRKPLGYAYVAITLDNSDHSLAIDFNEVTVARRVYRSGESEYLINGNPCR 120

Query: 112 V--VDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           +  V EL       K          +DRI SG   ERR   D     +  + +R++   +
Sbjct: 121 LKEVSELFYDTGIGKEGYSIIGQGQIDRILSGKPEERRELFDEAAGIVKFK-KRKLTAQK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM----INALSSLIM 213
           +L   R  L+          + +E Q+      +E        R E+    +N       
Sbjct: 180 KLDNERENLVRVN----DILTELERQVGPLQRQSEKAHTYLKKREELKNYDVNMFLLESA 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +      K ++      + + ++ ++K EY +   D ++MD  
Sbjct: 236 RIETELKSADEKYTIADDELKETNATYESIKAEYERLGNDMQQMDER 282


>gi|168493168|ref|ZP_02717311.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC3059-06]
 gi|183576749|gb|EDT97277.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           CDC3059-06]
          Length = 1179

 Score = 64.2 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 113/289 (39%), Gaps = 35/289 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+  S ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKSEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK--MDSMSR 262
             +      +L+    L   + Q    L+EE  + L   R+   D M++
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQDLQDEMAK 285


>gi|86610360|ref|YP_479122.1| chromosome segregation protein SMC [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86558902|gb|ABD03859.1| putative chromosome segregation protein SMC [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 1188

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/236 (20%), Positives = 84/236 (35%), Gaps = 50/236 (21%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + ++ F+++ ++  L      T+  G NG GK+NIL+ I F   LS  RG R   
Sbjct: 1   MYIKRIELTRFKSFGSTTSLPLLPGFTVISGPNGSGKSNILDGILFALGLSSSRGMRAER 60

Query: 61  YADVTRIGS-------PSFFSTFARV----EGMEGLADISIKLETRDDRSVRCLQ----- 104
             D+   GS        +  S    +    +G      +S +L  R  ++    +     
Sbjct: 61  LLDLVHSGSLNGNRQVETHVSVTFELGPGEDGQPREWKVSRRLRVRPGKAEELARDSGTE 120

Query: 105 -----------INDVVIRVVDELNKHLRISWLVP---------SMDRIFSGLSMERRRFL 144
                      INDV    + EL++ L    + P          +  I S    ERR+ +
Sbjct: 121 SFSLPYTSTFYINDVPC-TLSELHEQLEAMHIYPNGYNVVLQGDVTSIISMHPKERRQII 179

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
           D +           +  F+R +   N  L            IE +    G ++   
Sbjct: 180 DELAG---------VATFDRKIAQANSKLEAVREQIERFRLIEQEWQAQGERLLKE 226


>gi|303242100|ref|ZP_07328591.1| chromosome segregation protein SMC [Acetivibrio cellulolyticus CD2]
 gi|302590394|gb|EFL60151.1| chromosome segregation protein SMC [Acetivibrio cellulolyticus CD2]
          Length = 1190

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 106/289 (36%), Gaps = 38/289 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A  + L F++  T  VG NG GK+NI +AI   L     +  R   
Sbjct: 1   MHLKRLEIQGFKSFADKINLEFNSGITAVVGPNGSGKSNISDAIRWVLGEQSAKTLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+       FA V      AD S+ L+  +    R +         IN    R
Sbjct: 61  MEDVIFAGTEHRKQLGFAEVSLTIDNADHSLPLDYSEVTITRRVYRSGESEYLINKTSCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D     L                +D I S  S ERR   +     I     R++   +
Sbjct: 121 LKDVYELFLDTGIGKDGYSIIGQGRVDEILSTKSEERRHLFE-EASGIMKYKVRKLEAEK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIE--AQMAELGVKINIARVEM----INALSSLIMEYVQ 217
           +L   R  L+      +   + +E   Q +++  +    R  +    +N     I ++ +
Sbjct: 180 KLELTRQNLVRINDIITELETQLEPLRQQSDVAKRYLNLRDTLKELEVNVYIENISKFKE 239

Query: 218 KE-NFPHIKLSLTGFLDGK---------FDQSFCALKEEYAKKLFDGRK 256
           K   F    +S+   +D            +Q    L +E   KL + R+
Sbjct: 240 KIKEFEESYISIKDNIDSDNKKLEDITLLNQKKLVLLKELETKLDNSRQ 288


>gi|290985195|ref|XP_002675311.1| structural maintenance of chromosome 5 [Naegleria gruberi]
 gi|284088907|gb|EFC42567.1| structural maintenance of chromosome 5 [Naegleria gruberi]
          Length = 900

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 16/118 (13%)

Query: 3   NRIK---IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--- 56
            +++   I  + I  F  Y            + +G NG GK++I+ AI       G    
Sbjct: 63  PKMRDGSIVRIKIHNFMTYDDCEFFPGPGLNLVLGPNGTGKSSIVGAICV--GLAGHTKL 120

Query: 57  --RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL---QINDVV 109
             R +  +D+ + G    F     +E      ++ IK     ++  +     ++N   
Sbjct: 121 LGRASRVSDMIKHGKSEAF---VEIELKAAKKNVVIKRSFHLNKDNKESTDWRVNGTK 175


>gi|148993856|ref|ZP_01823258.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489074|ref|ZP_02713273.1| chromosome segregation protein SMC [Streptococcus pneumoniae SP195]
 gi|147927681|gb|EDK78706.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572487|gb|EDT93015.1| chromosome segregation protein SMC [Streptococcus pneumoniae SP195]
 gi|301794329|emb|CBW36754.1| putative chromosome partition protein [Streptococcus pneumoniae
           INV104]
 gi|332073585|gb|EGI84064.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA17570]
          Length = 1179

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 61/281 (21%), Positives = 109/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+  S ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKSEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELAQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|291527953|emb|CBK93539.1| condensin subunit Smc [Eubacterium rectale M104/1]
          Length = 1186

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 36/287 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  R AS
Sbjct: 1   MYLKSLEVQGFKSFANKIVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAS 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A V      +D S+ ++  +    R +         IN    R
Sbjct: 61  MQDVIFAGTENRKPLGYAYVAITLDNSDHSLAIDFNEVTVARRVYRSGESEYLINGNPCR 120

Query: 112 V--VDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           +  V EL       K          +DRI SG   ERR   D     +  + +R++   +
Sbjct: 121 LKEVSELFYDTGIGKEGYSIIGQGQIDRILSGKPEERRELFDEAAGIVKFK-KRKLTAQK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM----INALSSLIM 213
           +L   R  L+          + +E Q+      +E        R E+    +N       
Sbjct: 180 KLDNERENLVRVN----DILTELERQVGPLQRQSEKAHTYLKKREELKTYDVNMFLLESA 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +      K ++      + + ++ ++K EY +   D ++MD  
Sbjct: 236 RIETELKSADEKYAIADDELKETNATYESIKAEYERLGNDMQQMDER 282


>gi|167035148|ref|YP_001670379.1| SMC domain-containing protein [Pseudomonas putida GB-1]
 gi|166861636|gb|ABZ00044.1| SMC domain protein [Pseudomonas putida GB-1]
          Length = 574

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/372 (13%), Positives = 131/372 (35%), Gaps = 38/372 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  FRN+A   +  + ++T+ +G N VGKTN++ A+  L   +     S A++
Sbjct: 1   MLITRVVLKGFRNFADATVGLE-RNTLIIGANNVGKTNLVYALRLL-LDKSL---SDAEI 55

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             + S    S+  ++        I+I      + +V            +  L  ++    
Sbjct: 56  EPMESDFHISSAGKIS---DHLSITIYFSEVSEDAV------------LASLKGNIT--- 97

Query: 125 LVPSMDRIFSGLSMERRRF-LDRMVFAIDPRHRRRMIDFERLMRGRN-RLLTEGYFDSSW 182
                       + +RR       + A  P        +   ++  N R +        +
Sbjct: 98  ---DDSCFVLQYTADRRSLTYQIKIGATKPSLVEIPSRY--YLKHINLRYVKSRRDLEKY 152

Query: 183 CSSIEAQMAELGVKINIARVEMINALS-SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
            +S + Q+ +L ++         +    + I + ++  N     L          ++   
Sbjct: 153 INSEKRQLLKLSLENRSDDESKSDHRQMARIGKALEAINGRIRNLHYVKGATDSVNEELQ 212

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            L  ++++      ++   S    +      L +       ++  G  G    +L+ ++ 
Sbjct: 213 KLAHDFSE-----YEVKLDSGAIQVQQFIDSLRLGASTSGASVMLGGDGRNNQILMALWK 267

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGTDKSVFDSLNE 360
           A ++   +         ++E  AHL   ++  L   ++ D+  Q F+T     +      
Sbjct: 268 AKSQREHDPDSEVVFYCVEEPEAHLHPHQQRKLADYLINDLPGQTFITSHSPQITARYTP 327

Query: 361 TAKF-MRISNHQ 371
           ++   ++++  +
Sbjct: 328 SSIVHLKVTGGR 339


>gi|254976971|ref|ZP_05273443.1| putative conjugative transposon DNA recombination protein
          [Clostridium difficile QCD-66c26]
 gi|255651889|ref|ZP_05398791.1| putative conjugative transposon DNA recombination protein
          [Clostridium difficile QCD-37x79]
 gi|260687153|ref|YP_003218287.1| putative conjugative transposon DNA recombination protein
          [Clostridium difficile R20291]
 gi|306520352|ref|ZP_07406699.1| putative conjugative transposon DNA recombination protein
          [Clostridium difficile QCD-32g58]
 gi|260213170|emb|CBE04624.1| putative conjugative transposon DNA recombination protein
          [Clostridium difficile R20291]
          Length = 540

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 5  IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          + I+ L I  F+ ++   +  F+    I VG+NG GK+ ILEAI+ +  G    +    +
Sbjct: 1  MSIRKLKIKNFKCFSDWFIVDFENGINILVGNNGTGKSTILEAINLVLTGTYHGKNIRNE 60

Query: 64 VTRI 67
          +T+ 
Sbjct: 61 LTQY 64


>gi|73971498|ref|XP_538759.2| PREDICTED: similar to Structural maintenance of chromosome 2-like 1
           protein (Chromosome-associated protein E) (hCAP-E)
           (XCAP-E homolog) isoform 1 [Canis familiaris]
          Length = 1191

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 101/281 (35%), Gaps = 36/281 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNSRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKIMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKM 257
           + ++    L +   ++S   LKE      +  +KL +  K 
Sbjct: 233 LYIAYQFLLAEDTKERSAEELKEMQDKVVKLQEKLSENDKK 273


>gi|315647373|ref|ZP_07900486.1| hypothetical protein PVOR_18699 [Paenibacillus vortex V453]
 gi|315277575|gb|EFU40904.1| hypothetical protein PVOR_18699 [Paenibacillus vortex V453]
          Length = 599

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 63/382 (16%), Positives = 128/382 (33%), Gaps = 61/382 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + I  FRN+    +    + ++ +G N +GK+N++ A+  L   +     S +D+
Sbjct: 1   MHISNIKIKGFRNFNEANVNLKQK-SLIIGSNDIGKSNLIYALRLLLDKK----ISDSDL 55

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               S      F   +       I IK E+  +         D VI  V +        +
Sbjct: 56  ELKDSD-----FHVYDESNNEIFIQIKFESVVE---------DCVIGKVGKYVNSEGELF 101

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAID--------PRHRRRMI-DFERLMRGRNRLLTE 175
           L      +  G S E  +     +   +          + + +  D+    R  N  + +
Sbjct: 102 LAYE---VKRGESGE--KSYQFYIGQREDDLQPIESRYYLKVLNMDYIESSRELNSYIRK 156

Query: 176 GYFDSSWCS--SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
              +    S      Q+ +   KI     + IN L++ I            KLS      
Sbjct: 157 EKKNLLLESRKQRTKQIVQSDDKITKKIEKSINILNNRIT-----------KLSYINSAT 205

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC----DKAITIAHGST 289
              +    +L   +         +D  +     G    D I            +++ G  
Sbjct: 206 SSLNDELLSLSFHHIAS-----TIDFDTG----GIDVEDFINSVNLVSKVNGKSLSVGGD 256

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMT 348
           G    + + +  A  R++ +T     I  ++E  AHL   ++  L + +   + SQ+ +T
Sbjct: 257 GRNNQIYLALRTAKNRILDDTPLEVTICCIEEPEAHLHPHQQRRLSKYLVESLRSQVLIT 316

Query: 349 GTDKSVFDSLNETAKFMRISNH 370
                +    +  +  +R+ N 
Sbjct: 317 SHSPQIASEFSPDS-IIRLYNE 337


>gi|284175980|ref|ZP_06389949.1| hypothetical protein Ssol98_15165 [Sulfolobus solfataricus 98/2]
          Length = 363

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I  F++Y      F+ + +I VG NG GKTN+++A SFL               R
Sbjct: 2   IKRLKIKNFKSYRDSEFEFE-KVSIVVGPNGSGKTNLVDAFSFLKQLIRPLSYPPYPFIR 60

Query: 67  IG--------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELN 117
            G                  ++G     D   ++     +  + +   +   +     + 
Sbjct: 61  WGDYKNVVFMQDENLDISFEIDGEYKGKDYHYEISLNKLQIKKEIINFDSYSMERRGNVI 120

Query: 118 KHLRISWLVPSMDRIFS 134
           ++      +P    +F+
Sbjct: 121 RYENKEMTIPDNLSVFN 137


>gi|300024389|ref|YP_003757000.1| chromosome segregation protein SMC [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299526210|gb|ADJ24679.1| chromosome segregation protein SMC [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 1153

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +KI  L I  F+++     LV +   T  VG NG GK+N+LEA+ ++   S  +  R A+
Sbjct: 1   MKITRLRILGFKSFVDPTELVIEPGLTGVVGPNGCGKSNLLEALRWVMGESSHKSMRAAA 60

Query: 61  YADVTRIGSPS-----------FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDV 108
             DV   GS             F    AR    E   + +I++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSGGRPERQSAEVTMFLDNSARRAPAEFNDNDTIEITRRIEREAGSAYRINGR 120

Query: 109 VIRVVD--ELNKHLRISWLVPSMDR------IFSGLSMERRRFLDR 146
            +R  D   L +        P++ R      + +     RRR L+ 
Sbjct: 121 EVRARDVKVLFEDAATGARSPALVRQGQIGELVNAKPEHRRRILED 166


>gi|20807912|ref|NP_623083.1| chromosome segregation ATPase [Thermoanaerobacter tengcongensis
           MB4]
 gi|20516479|gb|AAM24687.1| Chromosome segregation ATPases [Thermoanaerobacter tengcongensis
           MB4]
          Length = 1189

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 21/172 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60
           + +K L +  F+++A  + L F+   T  VG NG GK+NI +AI  +      +  R + 
Sbjct: 1   MYLKKLELYGFKSFADKVSLNFEKGITAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS       F      ++  +GL       + +  +  RS      IN    R
Sbjct: 61  LEDVIFAGSETRKPLGFCEINLTLDNSDGLLPFDYNEVVITRKIFRSGESEFFINKTPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           + D         + K          +D I S    ERR  L+  +     R+
Sbjct: 121 LKDVHELFLDTGIGKEGYSVIGQGKIDEILSAKPEERRLILEEAIGISKYRY 172


>gi|296273057|ref|YP_003655688.1| SMC domain-containing protein [Arcobacter nitrofigilis DSM 7299]
 gi|296097231|gb|ADG93181.1| SMC domain protein [Arcobacter nitrofigilis DSM 7299]
          Length = 789

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 94/268 (35%), Gaps = 33/268 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L +  F+ Y +  L FD      +G NG GK+ I EAI   +    F+   Y ++
Sbjct: 1   MILCKLKLENFKRYKTFELDFDEGLVGIIGKNGSGKSTIFEAI-LFALYGEFKDRGYKEI 59

Query: 65  TRI-GSPSFFSTFARVEGMEGLADISIKLETRDD--RSVRCLQINDVVIRVVD------- 114
            R   +    +    ++      +  +  E R     +   L  N  +I           
Sbjct: 60  VRNANATDKDAVVVELDFEFDSIEYKVVREFRGKALSANAKLYKNGELITSGAKEVTTSI 119

Query: 115 -ELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
            +L K  + ++L         +  + +    +R+R + +++      +       E+ + 
Sbjct: 120 MKLTKMSKEAFLHTLFASQKELTSLSNSKPEDRKRMIRKLLDLEKIDYI------EKELI 173

Query: 168 GRNRLLTE--GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
            ++R L      F     S+ + Q  +   +I         A+   + E +Q +      
Sbjct: 174 EKSRELKREISAFAEVLLSAEDIQTKK--EQIKSN-----EAIKKTLNEELQTQTKQIDS 226

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFD 253
           L L      K  +SF   KE   K L +
Sbjct: 227 LKLKELDIKKELESFVKTKEAKQKALSE 254



 Score = 36.4 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 16/163 (9%)

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
            L  +  +     ++  IKLSL+ F   L+ K       +      ++  G       + 
Sbjct: 630 QLKKVQTKKDDLIDYDKIKLSLSEFKTKLNSKVAPRISDIASNMYAQITKG-------KY 682

Query: 264 TLIGPHRS-DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI--LLLD 320
             I      D  +    K   I   S GE  +  + + +A ++ +S  +G + I  L  D
Sbjct: 683 QHIEVSNDFDFYIYDEGKKYPIERFSGGEIDLANLVLRIAISKTLSELSGSSQIGFLAFD 742

Query: 321 EISAHLDEDKRNALFR---IVTDIGSQIFMTGTDKSVFDSLNE 360
           E+    DE +R  +     ++ +   QIF+   +  + +   +
Sbjct: 743 EVFGSQDEARRMEILEAFHMIKEQYRQIFLISHEMEIKEMFEK 785


>gi|291524527|emb|CBK90114.1| condensin subunit Smc [Eubacterium rectale DSM 17629]
          Length = 1186

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 109/287 (37%), Gaps = 36/287 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  R AS
Sbjct: 1   MYLKSLEVQGFKSFANKIVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAS 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A V      +D S+ ++  +    R +         IN    R
Sbjct: 61  MQDVIFAGTENRKPLGYAYVAITLDNSDHSLAIDFNEVTVARRVYRSGESEYLINGNPCR 120

Query: 112 V--VDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           +  V EL       K          +DRI SG   ERR   D     +  + +R++   +
Sbjct: 121 LKEVSELFYDTGIGKEGYSIIGQGQIDRILSGKPEERRELFDEAAGIVKFK-KRKLTAQK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM----INALSSLIM 213
           +L   R  L+          + +E Q+      +E        R E+    +N       
Sbjct: 180 KLDNERENLVRVN----DILTELERQVGPLQRQSEKAHTYLKKREELKNYDVNMFLLESA 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +      K ++      + + ++ ++K EY +   D ++MD  
Sbjct: 236 RIETELKSADEKYAIADDELKETNATYESIKAEYERLGNDMQQMDER 282


>gi|330508286|ref|YP_004384714.1| chromosome segregation protein SMC [Methanosaeta concilii GP-6]
 gi|328929094|gb|AEB68896.1| chromosome segregation protein SMC [Methanosaeta concilii GP-6]
          Length = 1171

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 58/151 (38%), Gaps = 16/151 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + +  F+++  S+R+          G NG GK+NI++A+ F   LS  R  R   
Sbjct: 1   MYIKEVELKNFKSFGKSIRVPLKNDFVTVTGPNGSGKSNIVDALLFALCLSSSRAMRAER 60

Query: 61  YADVTRIG----SPSFFSTFARVEG-------MEGLADISIKLETRDDRSVRCLQINDVV 109
             D+   G    +P F     R++         +   ++S K++   D+       N   
Sbjct: 61  LPDLIYRGDNGKNPDFAQVIVRLDNTSRHFPLDQDTIEVSRKIKINRDKYASSYSFNGKS 120

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMER 140
                EL   L  + + P    I     + R
Sbjct: 121 CGQA-ELLDLLAKAGITPESYNIVMQGDVTR 150


>gi|320197272|gb|EFW71888.1| hypothetical protein EcoM_00468 [Escherichia coli WV_060327]
          Length = 566

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 122/357 (34%), Gaps = 53/357 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ + I  FRNY    + F+    + +G N VGKTN+L AI  L             +
Sbjct: 1   MRIETVYIKGFRNYCDAVINFNE-TNLIIGANDVGKTNLLYAIRLLL---------DKSL 50

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           + +      + F      E + +I I ++  D      +      +    E       S 
Sbjct: 51  SELDLEPKSNDFHVNSTGEQVENIEITIKFTDVSEDAVISKLGGYVSDEGETYIKYLASS 110

Query: 125 LVPSMDRIFSGL----SMERRRFLDRMVFAIDPRHRRRMIDFERL-------MRGRNRLL 173
           L      + S           RF  + +       +R +  + ++       +    R  
Sbjct: 111 LTMDYKILLSHEHNNFDEVPNRFYLKCLSLRYINSQRDLEKYIKIEKKHLLRLAQEVRSE 170

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            +   D +  + +   + E+  K+    +  + + +  + E ++K ++ H +L++     
Sbjct: 171 KDTENDGAVFTELNKLLTEVNEKV--KGISYVASATEELNEELRKLSYTHDRLTV----- 223

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            + D     + +++ +KL                 +   L++                  
Sbjct: 224 -QLDTGAIGI-DQFIEKLELS-----------ANTNGKKLMLGGDGFNNQ---------- 260

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTG 349
            +L+ ++ A +    +      I  ++E  AHL   ++  L   ++  +  Q  +T 
Sbjct: 261 -ILLALWKAKSVREHDVESEVVIYCIEEPEAHLFPHQQRKLAAYLIDKLPGQAIVTS 316


>gi|197303072|ref|ZP_03168120.1| hypothetical protein RUMLAC_01799 [Ruminococcus lactaris ATCC
           29176]
 gi|197297927|gb|EDY32479.1| hypothetical protein RUMLAC_01799 [Ruminococcus lactaris ATCC
           29176]
          Length = 1186

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 82/224 (36%), Gaps = 27/224 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ ++  F    T  VG NG GK+N+ +A+   L     +  R  S
Sbjct: 1   MYLKSIEVQGFKSFANKIKFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    +     T   +  R       IN    R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNSDHKLPVEYGEVTVTRKLYRSGESEYLINGTACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+ +   +
Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKYKRRKNLS-LK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           +L   R  L             +E Q+  L  +   AR E +  
Sbjct: 180 KLEEERQNLTRVN----DILQELEKQLGPLERQSETAR-EYLKK 218



 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 100/282 (35%), Gaps = 25/282 (8%)

Query: 80   EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME 139
            E  E   +I  ++  +  +     Q N   +R+ ++L+KH+        +D+    L+ +
Sbjct: 877  ESKELFEEIRQEIHGQTSKREELNQKNKDFLRLREDLSKHIA------DLDKETFRLNSQ 930

Query: 140  RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199
            +  + +     ++       + +   M  RN  LT+          ++ ++ +LG     
Sbjct: 931  KEGYEEASEKQMNYMWEEYELTYNHAMELRNEKLTDLAEMKRQIQVLKNEIRKLGTVNVN 990

Query: 200  ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            A  +  N          Q ++    + SL   ++           E++A+   +  ++  
Sbjct: 991  AIEDYKNVSERYTFLKGQHDDLVEAEASLVQIIEELDTAMRKQFTEQFARIAKEFNEVFR 1050

Query: 260  MS----RRTLIGPHRSDLI---VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLI 307
                  + TL      D++   +    +            S GE+ +  + +  A     
Sbjct: 1051 QLFGGGKGTLELMEDEDILEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA----- 1105

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
                  +P  LLDEI A LD++  +   + +  +   +Q  +
Sbjct: 1106 IQNLKPSPFCLLDEIEAALDDNNVDRYAQYLHKLTKHTQFIV 1147


>gi|257063722|ref|YP_003143394.1| chromosome segregation protein SMC [Slackia heliotrinireducens DSM
           20476]
 gi|256791375|gb|ACV22045.1| chromosome segregation protein SMC [Slackia heliotrinireducens DSM
           20476]
          Length = 1174

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 102/279 (36%), Gaps = 29/279 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L +  F+++A    +  +   T  VG NG GK+NI +A+ ++   R     R  +
Sbjct: 1   MYLKSLVLKGFKSFADRQVISLEPGITAIVGPNGSGKSNISDAVLWVLGERNPKHLRGQA 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   GS +  S   A VE +   +D ++ ++  +    R +         IN    R
Sbjct: 61  MEDVIFAGSSARKSVGVAEVELVLDNSDGTLPVDYAEVSLTRRMYRSGESEYLINGAPAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            +D         L           ++D I S   ++RR  ++     +  + R+      
Sbjct: 121 RMDFMDILHDTGLGTGTHSIIGQGNLDAILSSKPIDRRALIEEAAGVLKHKQRKERSA-R 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           +L    N LL          + +E Q+  L  K    R E    LSS + +         
Sbjct: 180 KLASMDNHLLRV----KDVAAEVERQLKPLARK--AKRAEAYQGLSSELAQLNLLLAVDD 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
           ++  L    DG   +   A      K+    +  + + +
Sbjct: 234 LR-RLQRAWDGALKEETEAAALIDVKRFELEQSNEKLEK 271


>gi|119173068|ref|XP_001239047.1| hypothetical protein CIMG_10069 [Coccidioides immitis RS]
          Length = 1194

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 21/224 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + +S F  Y S  L    +  + +G NG GK+ ++ AI   L  G     R    A
Sbjct: 115 AIVRIKLSNFVTYTSAELRPGPRLNLVIGPNGTGKSTLVCAICLGLGEGPQHLGRAKDAA 174

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHL 120
           +  + G     +    +    G  +I I    + D +     +N   V  + V EL + L
Sbjct: 175 EYIKHGCREA-TIEIELAAPPGKRNIVIARVIKRDGNKSTFTVNGDQVPGKRVRELARSL 233

Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI-DFERLMRGRNRLLT 174
            I        +P   ++    ++     L     A  PR   R   D +RL   + +L  
Sbjct: 234 SIQIDNLCQFLPQD-KVSEFAALTPVELLQSTQRAAAPREVTRWYEDLKRLREQQKKLQV 292

Query: 175 EGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSS 210
           E         ++E +      ++           R++ +  +  
Sbjct: 293 ENRQQQEVLQNLERRQENQREEVERMKHRAAVKKRLKYLELMRP 336


>gi|294101613|ref|YP_003553471.1| SMC domain protein [Aminobacterium colombiense DSM 12261]
 gi|293616593|gb|ADE56747.1| SMC domain protein [Aminobacterium colombiense DSM 12261]
          Length = 1139

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 104/306 (33%), Gaps = 48/306 (15%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + I+ L +  F+++  S  L F    T  VG NG GK+NIL+ + ++         R   
Sbjct: 1   MFIERLRLKGFKSFGGSHELTFSPGFTAIVGPNGSGKSNILDGLRWVLGEGSPNCLRITR 60

Query: 61  YADVTRIGS---PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
            +D+   GS   P+   T   +   E     +IK E   +     L ++ + IR+ D   
Sbjct: 61  QSDLLFQGSISLPTATETEVSLCIREDPKICTIKREFSPETGT-SLFVDGMRIRLQD--L 117

Query: 118 KHLRISWLVPSMDRIFSGL----------SMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
             ++  W +      F G             +RR  L+  +F ID         + +   
Sbjct: 118 DDVKRQWHMEGEQFAFIGQGEVAEAIHHRPQQRRSILE-ALFGID--------QYRKKRE 168

Query: 168 GRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEMINALSSLIMEYV--QKE 219
             N+ L     + +   ++ +++          V I      +++ L      Y   ++ 
Sbjct: 169 DANQKLKFASEELARLETLVSELTSRRDEIAAMVTIAEKARRLLDELDEKRRGYYFSRRA 228

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEE--------YAKKLFDGRKMDS---MSRRTLIGP 268
                  S    +     +   A + E        + + LF+  +        R   +G 
Sbjct: 229 FLERELYSFQSRIHALERRKNRAAEWETIWKEGLSFYQSLFNSYEQQKKVHEERTESLGF 288

Query: 269 HRSDLI 274
            R  L 
Sbjct: 289 QRETLR 294


>gi|238854773|ref|ZP_04645103.1| chromosome segregation protein SMC [Lactobacillus jensenii 269-3]
 gi|260664005|ref|ZP_05864858.1| chromosome segregation protein SMC [Lactobacillus jensenii
           SJ-7A-US]
 gi|282933851|ref|ZP_06339199.1| chromosome segregation protein SMC [Lactobacillus jensenii 208-1]
 gi|238832563|gb|EEQ24870.1| chromosome segregation protein SMC [Lactobacillus jensenii 269-3]
 gi|260561891|gb|EEX27860.1| chromosome segregation protein SMC [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301940|gb|EFA94194.1| chromosome segregation protein SMC [Lactobacillus jensenii 208-1]
          Length = 1189

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L ++ F+++A   ++ F    T  VG NG GK+NI EAI ++   S  +  R ++
Sbjct: 1   MPLTELTLTGFKSFAEKTKIKFGDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGSN 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS        A VE +    + ++  +       R +  N 
Sbjct: 61  MKDVIFAGSQYRTPMNHAEVELVFDNKNRALNFDADRVTVARRILRNG 108


>gi|149738962|ref|XP_001504048.1| PREDICTED: structural maintenance of chromosomes 2 [Equus caballus]
          Length = 1191

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 101/281 (35%), Gaps = 36/281 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIVLEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKE------EYAKKLFDGRKM 257
           + ++    L +   ++S   LKE      +  ++L +  K 
Sbjct: 233 LYIAYQFLLAEDTKERSAEELKEMQDKIVKLQEELSENDKK 273


>gi|320037006|gb|EFW18944.1| conserved hypothetical protein [Coccidioides posadasii str.
           Silveira]
          Length = 1194

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 76/224 (33%), Gaps = 21/224 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + +S F  Y S  L    +  + +G NG GK+ ++ AI   L  G     R    A
Sbjct: 115 AIVRIKLSNFVTYTSAELRPGPRLNLVIGPNGTGKSTLVCAICLGLGEGPQHLGRAKDAA 174

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHL 120
           +  + G     +    +    G  +I I    + D +     +N   V  + V EL + L
Sbjct: 175 EYIKHGCREA-TIEIELAAPPGKRNIVIARVIKRDGNKSTFTVNGDQVPGKRVRELARSL 233

Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI-DFERLMRGRNRLLT 174
            I        +P   ++    ++     L     A  PR   R   D +RL   + +L  
Sbjct: 234 SIQIDNLCQFLPQD-KVSEFAALTPVELLQSTQRAAAPREVTRWYEDLKRLREQQKKLQV 292

Query: 175 EGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSS 210
           E          +E +      ++           R++ +  +  
Sbjct: 293 ENRQQQEVLQDLERRQENQREEVERMKHRAAVKKRLKYLELMRP 336


>gi|191165831|ref|ZP_03027669.1| ATP binding protein [Escherichia coli B7A]
 gi|227883873|ref|ZP_04001678.1| ATP binding protein [Escherichia coli 83972]
 gi|190904155|gb|EDV63866.1| ATP binding protein [Escherichia coli B7A]
 gi|227839151|gb|EEJ49617.1| ATP binding protein [Escherichia coli 83972]
 gi|307555798|gb|ADN48573.1| ATP binding protein [Escherichia coli ABU 83972]
          Length = 465

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+A+  
Sbjct: 1  MRIDKLSLLNFRCFKQLDITFDEHITILVAPNGAGKTTVLDAVRL 45


>gi|218132445|ref|ZP_03461249.1| hypothetical protein BACPEC_00304 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992555|gb|EEC58557.1| hypothetical protein BACPEC_00304 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1191

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 81/222 (36%), Gaps = 26/222 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ +   F+   T  VG NG GK+N+ +A+   L     +  R   
Sbjct: 1   MYLKSIEVQGFKSFANKIVFEFNNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGTK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   G+       F      ++  +    +         R  R       IN    R
Sbjct: 61  MEDIIFAGTQMRKPVGFAYVAITLDNSDHALPVDYDEVVVARRVFRSGESEYMINGNTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + RR+    +
Sbjct: 121 LKDVSELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFK-RRKAAAVK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
           +L   R  L+          S +E Q+  LG +   AR  ++
Sbjct: 180 KLENERANLVRVN----DILSELEKQVGPLGKQSEKARQYLL 217


>gi|303324093|ref|XP_003072034.1| SMC family, C-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240111744|gb|EER29889.1| SMC family, C-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 1194

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 76/224 (33%), Gaps = 21/224 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + +S F  Y S  L    +  + +G NG GK+ ++ AI   L  G     R    A
Sbjct: 115 AIVRIKLSNFVTYTSAELRPGPRLNLVIGPNGTGKSTLVCAICLGLGEGPQHLGRAKDAA 174

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHL 120
           +  + G     +    +    G  +I I    + D +     +N   V  + V EL + L
Sbjct: 175 EYIKHGCREA-TIEIELAAPPGKRNIVIARVIKRDGNKSTFTVNGDQVPGKRVRELARSL 233

Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI-DFERLMRGRNRLLT 174
            I        +P   ++    ++     L     A  PR   R   D +RL   + +L  
Sbjct: 234 SIQIDNLCQFLPQD-KVSEFAALTPVELLQSTQRAAAPREVTRWYEDLKRLREQQKKLQV 292

Query: 175 EGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSS 210
           E          +E +      ++           R++ +  +  
Sbjct: 293 ENRQQQEVLQDLERRQENQREEVERMKHRAAVKKRLKYLELMRP 336


>gi|50308365|ref|XP_454184.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643319|emb|CAG99271.1| KLLA0E05303p [Kluyveromyces lactis]
          Length = 1098

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 10/128 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK + ++ F  +++  L    +    VG+NG GK+ IL AI+     +     R  S  D
Sbjct: 64  IKEIKLTNFMCHSNFSLRLGPRLNFIVGNNGSGKSAILTAITIGLGAKATTTNRGTSLKD 123

Query: 64  VTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRC------LQINDVVIRVVDEL 116
           + + G   S        EG+          E R +R++R         I     + V + 
Sbjct: 124 LIKQGCNTSKIVIVLCNEGLNSFEPGVYGKEIRIERTIRREGYSGSFSIRSEANKEVSDK 183

Query: 117 NKHLRISW 124
            + L +  
Sbjct: 184 KRDLEVIL 191


>gi|74318701|ref|YP_316441.1| hypothetical protein Tbd_2683 [Thiobacillus denitrificans ATCC
          25259]
 gi|74058196|gb|AAZ98636.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
          25259]
          Length = 478

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I  L ++ FR   +  L F     + VG NGVGKT +LEA+  L
Sbjct: 1  MQINRLTLTNFRGLTNSVLDFAPGFNLVVGVNGVGKTAVLEALRIL 46


>gi|76801408|ref|YP_326416.1| chromosome segregation protein [Natronomonas pharaonis DSM 2160]
 gi|76557273|emb|CAI48849.1| DNA double-strand break repair rad50 ATPase [Natronomonas pharaonis
           DSM 2160]
          Length = 897

 Score = 63.8 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 96/302 (31%), Gaps = 54/302 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ + + +  F+ YA   L      T+  G NG GK+++LEA  F   G      +  D 
Sbjct: 1   MRFERIRLRNFKCYAETELSLREGVTVIHGVNGSGKSSLLEACFFALYGSAAIDGTLDDA 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI----NDVVIRVVD------ 114
               +           G  G   I   ++ R   +     +    N  V +V D      
Sbjct: 61  IANDADEMSIELWFTHGG-GEYRIERNIKRRGGSAQTTTCLLETPNGTVEQVTDVEAHIE 119

Query: 115 ELNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMV-FAIDPRHRRRMID----FE 163
           EL +    +++  +  R      + +    ER+  +D ++       +R R  D     E
Sbjct: 120 ELLRMDADAFVNCAYVRQGEVNKLINATPSERQDMIDSLLQLGTLEEYRERASDARVGVE 179

Query: 164 RLMRGRNRLL---------TEGYFDSSWCSSIEAQMAELGVKI----------------- 197
           R++  +  LL          E        +++  +++EL   I                 
Sbjct: 180 RVLSQQETLLEDKRATIAEKEQKSLHDRLNALRTELSELKSDIETKEEERETAVETKQEA 239

Query: 198 ------NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
                    R E I  L + I E  +       +    G       ++   L+E     L
Sbjct: 240 VEVLEAYEQRREEIETLEADIEELTEDIAAAESERDALGERLRSLRETTETLRERRDDAL 299

Query: 252 FD 253
            +
Sbjct: 300 AE 301


>gi|297623774|ref|YP_003705208.1| SMC domain-containing protein [Truepera radiovictrix DSM 17093]
 gi|297164954|gb|ADI14665.1| SMC domain protein [Truepera radiovictrix DSM 17093]
          Length = 1131

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRAS 60
           +++  L +  F+++A    L F    T  VG NG GK+N+++A+ + + G     FR   
Sbjct: 1   MRLTSLTLQGFKSFADRTTLEFTEGVTAIVGPNGSGKSNLIDALRWATGGGRAEAFRAGD 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVD 114
             ++   GS    S  FA V+        ++ +     RS    L++     R +D
Sbjct: 61  KTELIFHGSAGKRSLGFAEVQLEFEREGETLCVSRTLLRSGESQLRLGGRAARFLD 116


>gi|289625663|ref|ZP_06458617.1| overcoming lysogenization defect protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330869396|gb|EGH04105.1| overcoming lysogenization defect protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 594

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 54/379 (14%), Positives = 104/379 (27%), Gaps = 65/379 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRR 58
           + +  + +  FR+   L +   +  +  +G+N VGKTN+  A+         S  R   +
Sbjct: 1   MHLSRIVVQNFRSLKYLDVPIASGSSAIIGENSVGKTNLFHALRICLDVQLSSTYRSLLK 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADIS--------------IKLETRDDRSVRCLQ 104
                   +G P            +G  +                +    R  ++VR   
Sbjct: 61  DDIHSQVNLGEPFQVLIGVEFSSFQGNENQEALLHGAQIAHDRARLFYRFRPRKAVREEL 120

Query: 105 INDVVIRVVD------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH--- 155
               + R +       EL                              + F     +   
Sbjct: 121 SRGELQRQLTLEDYSWELAGGGNPQV----DLADIVWSDELPALGASSVNFQYLQSYLVV 176

Query: 156 -RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE--LGVKINIARVEMINALSSLI 212
               + D E  ++ R   L             +  + +        I R   I  ++  I
Sbjct: 177 FLPALRDVEADLQSRRSTLARLIDAFQIDEQEQNALVQAVHVANQQIERSPTIQGIAESI 236

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
               ++ + P  +L +   L     QS                       R LI    +D
Sbjct: 237 DSAFERISGPAFRLGVELGLSSATFQSIL---------------------RNLIVLLSND 275

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP--ILLLDEISAHLDEDK 330
           L+  +  +   +          +L    L          G A   ILL++E  AHL    
Sbjct: 276 LVSKFEPRRNGLGLN------NILYIATLVEYFRKRAELGRAAGEILLIEEPEAHLHPQL 329

Query: 331 RNALFRIVTDIGSQIFMTG 349
           ++ L   +  +  Q  ++ 
Sbjct: 330 QSTLVEALRSMPFQSLVST 348


>gi|256750713|ref|ZP_05491598.1| SMC domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|256750296|gb|EEU63315.1| SMC domain protein [Thermoanaerobacter ethanolicus CCSD1]
          Length = 451

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60
           + +K L +  F+++A  + L F+   T  VG NG GK+NI +AI  +      +  R + 
Sbjct: 1   MYLKKLELQGFKSFADKVTLNFEKGVTAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS +     F      ++  +G        + +  +  RS      IN    R
Sbjct: 61  LEDVIFAGSENRKPLGFCEINLTLDNSDGYLPFDYTEVVITRKIFRSGESEFFINKTPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           + D     L                +D I S    +RR+  +  +     R+
Sbjct: 121 LKDIYELFLDTGVGKEGYSIIGQGRIDEILSAKPEDRRQIFEEAIGISKYRY 172


>gi|300984863|ref|ZP_07177151.1| RecF/RecN/SMC protein [Escherichia coli MS 45-1]
 gi|300408292|gb|EFJ91830.1| RecF/RecN/SMC protein [Escherichia coli MS 45-1]
 gi|315292954|gb|EFU52306.1| RecF/RecN/SMC protein [Escherichia coli MS 153-1]
          Length = 465

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++I  L++  FR +  L + FD   TI V  NG GKT +L+A+  
Sbjct: 1  MRIDKLSLLNFRCFKQLDITFDEHITILVAPNGAGKTTVLDAVRL 45


>gi|315230818|ref|YP_004071254.1| chromosome partition smc-like protein [Thermococcus barophilus MP]
 gi|315183846|gb|ADT84031.1| chromosome partition smc-like protein [Thermococcus barophilus MP]
          Length = 1087

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 97/286 (33%), Gaps = 42/286 (14%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
           I+ L +  F++Y    + + F    T  VG NG GK+NI +AI F+  G      R    
Sbjct: 4   IEKLEMKGFKSYGSRKVVVPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRATRI 63

Query: 62  ADVTRIGSP-------SFFSTFARVEGM---EGLADISIKLETRDDRSVRCLQINDVVIR 111
           +D+   G+        +  + +   E         ++ IK     D       +N     
Sbjct: 64  SDLIFAGTKKEPPAKYAEVTIYFNNEDRGFPVDEDEVVIKRRVYPDGRS-TYWLNGKRTS 122

Query: 112 VVDELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
             D L   L  + + P    +              +ERR  +D +           + ++
Sbjct: 123 RSDIL-DILSAAMISPEGYNLVLQGDITKFIKMSPVERRMIIDEISG---------IAEY 172

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           +   +     L +   + +    +  ++ +   K+   R + +  L         KE   
Sbjct: 173 DAKKKKAMEELKQAEENLARVDLLIHEVKKQLDKLEKERNDALRYLD-------LKEKLE 225

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
             K++L      + ++     +E   +   + ++++   +  + G 
Sbjct: 226 KAKVTLLVGEIKRLEKLIKESEERDKQIEKEAKEVEDKLKEIVKGI 271


>gi|224500034|ref|ZP_03668383.1| hypothetical protein LmonF1_10304 [Listeria monocytogenes Finland
           1988]
          Length = 1186

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L         +    +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250


>gi|16803844|ref|NP_465329.1| hypothetical protein lmo1804 [Listeria monocytogenes EGD-e]
 gi|224501395|ref|ZP_03669702.1| hypothetical protein LmonFR_02550 [Listeria monocytogenes FSL
           R2-561]
 gi|16411258|emb|CAC99882.1| smc [Listeria monocytogenes EGD-e]
          Length = 1186

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L         +    +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250


>gi|321257907|ref|XP_003193746.1| DNA repair-related protein [Cryptococcus gattii WM276]
 gi|317460216|gb|ADV21959.1| DNA repair-related protein, putative [Cryptococcus gattii WM276]
          Length = 1124

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 14/124 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK +++ +F  +  L + F  +    VG NG GK+ +L AI+    G+     R     D
Sbjct: 99  IKSISLIDFMCHRHLTVDFGPRMNFVVGHNGSGKSAVLTAIAVALGGKANLTGRGTGLKD 158

Query: 64  VTRIGSPSFFSTFARVEGMEG-----------LADISIKLETRDDRSVRCLQINDVVIRV 112
           + R G+     T       +            + + +I          +  +    +   
Sbjct: 159 LIRTGADRAVITITLANSGDSAYRPEVYNPNIVIERTIHSNGSSGYKFKASKDGKTIANK 218

Query: 113 VDEL 116
             EL
Sbjct: 219 RSEL 222


>gi|261189141|ref|XP_002620982.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
 gi|239591767|gb|EEQ74348.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
          Length = 1355

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 77/264 (29%), Gaps = 23/264 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I  + +++F  Y S       +  + +G NG GK+ ++ AI   L  G     R    A+
Sbjct: 230 IVRVKLTDFVTYTSAEFFPGPRLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPAE 289

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKHLR 121
             + G           +G     +  I+       +     IN          EL K   
Sbjct: 290 FVKHGCEEAIIEIELAKGRNHRENPVIRRTIVRKGNKSTFAINGKPSSKASVLELAKSFS 349

Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           I        +P                      A  P       +  + +R   + L   
Sbjct: 350 IQIDNLCQFLPQDKVAEFAALSPIELLHSTQRAAAGPEMLE-WHENLKTLRAEQKKLQAA 408

Query: 177 YF-DSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
              +    +++E   +M    V+  + R      +   I    +    P  + ++  F +
Sbjct: 409 NAGEREQLANLESRQEMQREDVERLLQR----ARIQKKIALLERSRPVPRYQEAVQSFRE 464

Query: 234 GK-----FDQSFCALKEEYAKKLF 252
            +       Q    L+ + A  L 
Sbjct: 465 AQHKRRNLQQEHGDLENQLAPALK 488


>gi|154249435|ref|YP_001410260.1| SMC domain-containing protein [Fervidobacterium nodosum Rt17-B1]
 gi|154153371|gb|ABS60603.1| SMC domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 935

 Score = 63.8 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F+ +      F +   + VG NG GK++I EA+     G   +     D+  
Sbjct: 2   INKIKLENFKCHLDREFDFVSGINVIVGRNGAGKSSIFEALGMALFGISEK--KPKDLIS 59

Query: 67  I--GSPSFFSTFARVEGMEGLADISIKLETRDDRS---VRCLQINDVVIRVVDELNKHLR 121
                 S+F       G +G     ++   +  ++   +R +  N+V+   +DE+ K++ 
Sbjct: 60  RLSSQNSYFKINVEFTGEDG-IRYEVERVYKSGKNSWVLRQVGSNNVITNKLDEVPKYVS 118

Query: 122 ISW 124
              
Sbjct: 119 KLL 121


>gi|331235125|ref|XP_003330223.1| hypothetical protein PGTG_11133 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309309213|gb|EFP85804.1| hypothetical protein PGTG_11133 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1239

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 93/287 (32%), Gaps = 38/287 (13%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           + +  + +  F++Y  +  +      T  +G NG GK+N+++AISF+   R    R    
Sbjct: 1   MPLHSVEVDNFKSYKGVQTIGPFKHFTAVIGPNGAGKSNLMDAISFVLGVRSAQLRSTQL 60

Query: 62  ADVTR-----------IGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQ-IND 107
            D+                P   S  A             S  +    D+S   +  IN 
Sbjct: 61  KDLIYKAGELEDSSTPHEQPKKASVTANYIDHRNGQQYRFSRTITVSSDKSGSSIYTINK 120

Query: 108 VVIRVVDE---------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------ 152
            V+++ D          L K          ++ I S       + +D++  +++      
Sbjct: 121 KVVKLEDYVATLESHNILVKAKNFLVFQGDVEAIASQNPKSLSKLIDQISGSLELAAEYE 180

Query: 153 ---PRHRRRMIDFERLMRGR---NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
                +     +    +  R   N  + +     +     +    +    I    +  + 
Sbjct: 181 RKKAAYLEASKNSNDTIARRRVINAEIKDFKHQKTEMEKYDQLCHDRDEAIIHHLLWKLF 240

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
            + + I E+++     +  L          ++S  A + EYA+   +
Sbjct: 241 HIEAQINEHLESIESKNETLGPMRLEVADLERSVAAARREYAQVTRE 287


>gi|312110526|ref|YP_003988842.1| SMC domain protein [Geobacillus sp. Y4.1MC1]
 gi|311215627|gb|ADP74231.1| SMC domain protein [Geobacillus sp. Y4.1MC1]
          Length = 475

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/198 (19%), Positives = 73/198 (36%), Gaps = 23/198 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRASY 61
           +KI  L +  F+N+      F  +   F GDN  GKT+I +AI F   G    GF+   +
Sbjct: 1   MKIISLELRHFKNHTQAFFEF-KETNHFFGDNFTGKTSIGDAIVFALYGVTKHGFKSHVH 59

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK-HL 120
            D  + G  S      ++        + I+    D +    L  N V  + + +L   H+
Sbjct: 60  -DFIQTGKNS---MSVKIMVQLNNRILEIERSINDKQETLTLNKNKVTQKQLSQLIGDHV 115

Query: 121 RISW-LVPSMDRIFSGLSMERRRFLDRMVFAIDPR------HRRRMIDFER-LMRGRNRL 172
              +   P +         E ++     + ++ P       H   +    + L++   +L
Sbjct: 116 PFIYSFFPDVF------PEEEKKIAREFLISLLPNKNEINMHINNLETKMKDLLKQEKKL 169

Query: 173 LTEGYFDSSWCSSIEAQM 190
                +     + +E+Q 
Sbjct: 170 KQNITYYYGQLNMLESQF 187


>gi|237708924|ref|ZP_04539405.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229456986|gb|EEO62707.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 484

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + IK + IS FRN+    + F     + +G N  GK+N+L A+  L  GR 
Sbjct: 1  MYIKEIKISNFRNFKEASVPFHEGVNVIIGHNNTGKSNLLRAMG-LVLGRS 50


>gi|119873433|ref|YP_931440.1| hypothetical protein Pisl_1950 [Pyrobaculum islandicum DSM 4184]
 gi|119674841|gb|ABL89097.1| hypothetical protein Pisl_1950 [Pyrobaculum islandicum DSM 4184]
          Length = 460

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 1  MTNRIKI--KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          M++ + +  + + +  F++   L L       + VG NG GK+N+LEAI F
Sbjct: 1  MSHVMYVFVRKVVVRNFKSIGELELELRPGVNLLVGPNGAGKSNVLEAIRF 51


>gi|167040353|ref|YP_001663338.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X514]
 gi|300914437|ref|ZP_07131753.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X561]
 gi|307724327|ref|YP_003904078.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X513]
 gi|166854593|gb|ABY93002.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X514]
 gi|300889372|gb|EFK84518.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X561]
 gi|307581388|gb|ADN54787.1| chromosome segregation protein SMC [Thermoanaerobacter sp. X513]
          Length = 1196

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/172 (21%), Positives = 64/172 (37%), Gaps = 21/172 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60
           + +K L +  F+++A  + L F+   T  VG NG GK+NI +AI  +      +  R + 
Sbjct: 1   MYLKKLELQGFKSFADKVTLNFEKGVTAIVGPNGSGKSNISDAIRLVLGEQSIKSLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS +     F      ++  +G        + +  +  RS      IN    R
Sbjct: 61  LEDVIFAGSENRKPLGFCEINLTLDNSDGYLPFDYTEVVITRKIFRSGESEFFINKTPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           + D     L                +D I S    +RR+  +  +     R+
Sbjct: 121 LKDIYELFLDTGVGKEGYSIIGQGRIDEILSAKPEDRRQIFEEAIGISKYRY 172


>gi|49481951|gb|AAT66687.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A71]
          Length = 573

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 93/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           +  A++ I +                   +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCCQKCAEVGIDVSEGMVVLRRDILANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   ++ E+   L           +           LD    A        +  +  +
Sbjct: 112 KLVTTAILREVGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGA---EMAEALARYRAV 166

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
                 L+ +        S  E QMA         R++++       +E    E     +
Sbjct: 167 YEQHEALVKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQATLELGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + A+++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYSAIQKSYEALSGEGRGLDSI 248


>gi|296876110|ref|ZP_06900164.1| chromosome segregation protein SMC [Streptococcus parasanguinis
           ATCC 15912]
 gi|296432821|gb|EFH18614.1| chromosome segregation protein SMC [Streptococcus parasanguinis
           ATCC 15912]
          Length = 1178

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 104/277 (37%), Gaps = 30/277 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDKGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     +      ++  +G    AD  I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYACVTVVLDNQDGFIQQADKEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +    + R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--FKTRRKETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +      L            +E Q+  L  +  +AR      L       V   +   
Sbjct: 179 TKLNQTQENLDRL---EDILYELEGQIQPLEKQATVARR----FLELDQERQVLLLDVLV 231

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
            ++ LT  L  K DQ   A++E+ A      + ++  
Sbjct: 232 AQVDLTKELYEKADQEEKAIQEQLASYYQRRQVLEEE 268


>gi|284802250|ref|YP_003414115.1| hypothetical protein LM5578_2006 [Listeria monocytogenes 08-5578]
 gi|284995392|ref|YP_003417160.1| hypothetical protein LM5923_1957 [Listeria monocytogenes 08-5923]
 gi|284057812|gb|ADB68753.1| hypothetical protein LM5578_2006 [Listeria monocytogenes 08-5578]
 gi|284060859|gb|ADB71798.1| hypothetical protein LM5923_1957 [Listeria monocytogenes 08-5923]
          Length = 1186

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L         +    +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250


>gi|322389037|ref|ZP_08062605.1| DNA repair protein RecN [Streptococcus parasanguinis ATCC 903]
 gi|321144260|gb|EFX39670.1| DNA repair protein RecN [Streptococcus parasanguinis ATCC 903]
          Length = 552

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 61/385 (15%), Positives = 129/385 (33%), Gaps = 65/385 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                +     +G+E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFTVESNRHLTALFEEQGLEWTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+               F D   F     +R+   D++RL +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDAAFFQTKDAYRQTFEDYKRLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINA--LSSLIMEYVQK 218
             L      + +    +E Q+AE+           ++   R  ++N   ++  +      
Sbjct: 176 VELQRNQQENKARIEMLEFQIAEIEAAALEVDEDLRLEQERQRLLNHKMIADTLTNAYTM 235

Query: 219 ENFPHIKLSLTGFLDG--------KFDQSFCALKEEYAKKLFD-----GRKMDSMSRRTL 265
            +      SL+             ++D S+  L  + ++  +       R  D +     
Sbjct: 236 LDAEEFS-SLSNVRSAMNDLENIEEYDPSYKELSSQLSETFYALEDITKRLEDVVDGLEF 294

Query: 266 IGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
            G     +        +IT  +G  G+ K VL          ++  T    +L    +S+
Sbjct: 295 DGNRLMQVESRLDLIHSITRKYG--GQVKDVL--------EYLAQITKEYSLLTGSNLSS 344

Query: 325 HLDEDK-----RNALFRIVTDIGSQ 344
             D +K       +L  +  D+  Q
Sbjct: 345 E-DLEKELKRLEKSLVTLAQDLSDQ 368


>gi|138895960|ref|YP_001126413.1| DNA repair and genetic recombination [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248851|ref|ZP_03147551.1| DNA repair protein RecN [Geobacillus sp. G11MC16]
 gi|49481927|gb|AAT66675.1| DNA repair and genetic recombination protein [Geobacillus
           thermodenitrificans]
 gi|49481929|gb|AAT66676.1| DNA repair and genetic recombination protein [Geobacillus
           thermodenitrificans]
 gi|49481931|gb|AAT66677.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A21]
 gi|49481933|gb|AAT66678.1| DNA repair and genetic recombination protein [Geobacillus
           thermodenitrificans]
 gi|49481935|gb|AAT66679.1| DNA repair and genetic recombination protein [Geobacillus
           thermodenitrificans]
 gi|49481937|gb|AAT66680.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A45]
 gi|49481939|gb|AAT66681.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A5]
 gi|49481941|gb|AAT66682.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A54]
 gi|49481945|gb|AAT66684.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A66]
 gi|49481947|gb|AAT66685.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A67]
 gi|49481949|gb|AAT66686.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A69]
 gi|49481953|gb|AAT66688.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A73]
 gi|49481965|gb|AAT66694.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A91]
 gi|82395828|gb|ABB72478.1| DNA repair protein [Geobacillus thermodenitrificans NG80-2]
 gi|134267473|gb|ABO67668.1| DNA repair and genetic recombination [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211727|gb|EDY06486.1| DNA repair protein RecN [Geobacillus sp. G11MC16]
          Length = 573

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 93/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           +  A++ I +                   +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCCQKCAEVGIDVSEGMVVLRRDILANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   ++ E+   L           +           LD    A        +  +  +
Sbjct: 112 KLVTTAILREVGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGA---EMAEALARYRAV 166

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
                 L+ +        S  E QMA         R++++       +E    E     +
Sbjct: 167 YEQHEALVKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQATLELGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + A+++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYSAIQKSYEALSGEGRGLDSI 248


>gi|238790539|ref|ZP_04634306.1| Predicted ATP-binding protein involved in virulence [Yersinia
           frederiksenii ATCC 33641]
 gi|238721336|gb|EEQ13009.1| Predicted ATP-binding protein involved in virulence [Yersinia
           frederiksenii ATCC 33641]
          Length = 541

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 74/417 (17%), Positives = 144/417 (34%), Gaps = 79/417 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + +  ++ +  L +  D    +   +NG GKT ILEAI  LS    +R      +  
Sbjct: 59  LKKVKLVNYKGFNELSINLDNDIILIAANNGYGKTGILEAIY-LSLSWFYR------LV- 110

Query: 67  IGSPSFFS-----TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            GS   +          V     L ++ I +      S   + I   +            
Sbjct: 111 YGSNQGWKFGDKYISRLVSNAAMLVNLDISVGNNKKPSGYQIGIARSLGAS--------- 161

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN----------- 170
               V S    F  L+     F D  +  + P        +  + RG+N           
Sbjct: 162 ---SVKSDYTEFKELAEMYLEFQDSDI--VAPMFA-----YYSVERGKNYPDGGFTSAIE 211

Query: 171 ----RLLTEGYFDSSWC--SSIEAQMAELGVKINIA--------RVEMINALSSLIMEYV 216
               +LL   Y DSS    S+I A   +   +I I         + E + ++   I    
Sbjct: 212 SGSGKLLDRLYPDSSLALSSNIFASFIKWAAEIKIKKIVSNEDEQSEKLKSIKEFIYHIS 271

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM---------DSMSRRTLIG 267
             +    IK +L    + + +  F +  ++ +  L    K+         D +   + I 
Sbjct: 272 HSDLADEIKNTLISQKEKEVEIIFGSQSKDKSTNLDRMEKIVDMIFALGCDFIDDISSIQ 331

Query: 268 PHRS------DLIVDYCDKAITIAHGSTGEQKVVLV----GIFLAHARLISNTTGFAPIL 317
                     DL+    D  I+ ++ S GE+  + +     + L +     +      I+
Sbjct: 332 LKYDEKLEALDLVCVKRDCEISASYLSHGEKSTLSLLFDIALKLIYTCGTEDPFSGQGIV 391

Query: 318 LLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETA-KFMRISNHQ 371
            +DEI  HL    + +L   +       +I  T    ++ +++ E A + +++ N++
Sbjct: 392 FIDEIELHLHPSWQQSLLSKLKKTFPNVKIIATTHSPNILNTVEEQAIRKIKVKNNR 448


>gi|217964044|ref|YP_002349722.1| chromosome segregation protein SMC [Listeria monocytogenes HCC23]
 gi|290893066|ref|ZP_06556055.1| chromosome segregation SMC protein [Listeria monocytogenes FSL
           J2-071]
 gi|217333314|gb|ACK39108.1| chromosome segregation protein SMC [Listeria monocytogenes HCC23]
 gi|290557426|gb|EFD90951.1| chromosome segregation SMC protein [Listeria monocytogenes FSL
           J2-071]
 gi|307571386|emb|CAR84565.1| chromosome condensation and segregation protein [Listeria
           monocytogenes L99]
          Length = 1186

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L         +    +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250


>gi|49481961|gb|AAT66692.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A86]
          Length = 573

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 93/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           +  A++ I +                   +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCCQKCAEVGIDVSEGMVVLRRDILANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   ++ E+   L           +           LD    A        +  +  +
Sbjct: 112 KLVTTAILREVGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGA---EMAEALARYRAV 166

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
                 L+ +        S  E QMA         R++++       +E    E     +
Sbjct: 167 YEQHEALVKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQATLELGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + A+++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYSAIQKSYEALSGEGRGLDSI 248


>gi|226224407|ref|YP_002758514.1| Smc protein [Listeria monocytogenes Clip81459]
 gi|225876869|emb|CAS05578.1| Putative Smc protein [Listeria monocytogenes serotype 4b str. CLIP
           80459]
          Length = 1186

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L         +    +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250



 Score = 36.8 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 196  KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLF 252
            +    R + +N   + ++    KE    +   +   +  +F +SF A+K E+A    +LF
Sbjct: 995  ERIQERFDFLNRQQADLLA--AKETLFKVMDEMDEEMKIRFSESFEAIKTEFAIVFPELF 1052

Query: 253  DGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
             G   + +      L+      ++     K   ++  S GE+ +  + +  A  R+    
Sbjct: 1053 GGGSAELVLLDPENLLTTGIDIVVQPPGKKLQNLSLRSGGERALTAIALLFAIIRV---- 1108

Query: 311  TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
                P  +LDE+ A LDE       R +     G+Q  +
Sbjct: 1109 -RPVPFCILDEVEAALDEANVTRFSRYLKQFESGTQFIV 1146


>gi|45190650|ref|NP_984904.1| AER044Wp [Ashbya gossypii ATCC 10895]
 gi|44983629|gb|AAS52728.1| AER044Wp [Ashbya gossypii ATCC 10895]
          Length = 1103

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 10/127 (7%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYADV 64
           K + +  F  +    L F  +    VG NG GK+ IL AI+ +   +     R  S   +
Sbjct: 63  KRITLKNFMCHEHFELEFGPRLNFIVGSNGSGKSAILTAITVVFGAKASDTNRGVSLKSL 122

Query: 65  TRIGSPSFFSTF-------ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
            R G  +               E     ++I+I+   + D       I     R V    
Sbjct: 123 IREGCGTARIAIVLANQGLGAFEQGVYGSEITIERTLKRDGQSSHFSIKSENGREVSNKK 182

Query: 118 KHLRISW 124
           + L+   
Sbjct: 183 RDLQRIV 189


>gi|46908035|ref|YP_014424.1| chromosome segregation SMC protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47093843|ref|ZP_00231587.1| chromosome segregation SMC protein [Listeria monocytogenes str. 4b
           H7858]
 gi|254933276|ref|ZP_05266635.1| chromosome segregation SMC protein [Listeria monocytogenes HPB2262]
 gi|46881305|gb|AAT04601.1| chromosome segregation SMC protein [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47017784|gb|EAL08573.1| chromosome segregation SMC protein [Listeria monocytogenes str. 4b
           H7858]
 gi|293584836|gb|EFF96868.1| chromosome segregation SMC protein [Listeria monocytogenes HPB2262]
 gi|332312245|gb|EGJ25340.1| Cell division protein Smc [Listeria monocytogenes str. Scott A]
          Length = 1186

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L         +    +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250



 Score = 36.8 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 196  KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLF 252
            +    R + +N   + ++    KE    +   +   +  +F +SF A+K E+A    +LF
Sbjct: 995  ERIQERFDFLNRQQADLLA--AKETLFKVMDEMDEEMKIRFSESFEAIKTEFAIVFPELF 1052

Query: 253  DGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
             G   + +      L+      ++     K   ++  S GE+ +  + +  A  R+    
Sbjct: 1053 GGGSAELVLLDPENLLTTGIDIVVQPPGKKLQNLSLRSGGERALTAIALLFAIIRV---- 1108

Query: 311  TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
                P  +LDE+ A LDE       R +     G+Q  +
Sbjct: 1109 -RPVPFCILDEVEAALDEANVTRFSRYLKQFESGTQFIV 1146


>gi|259507583|ref|ZP_05750483.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259164762|gb|EEW49316.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 670

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 21/171 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGAGDRKPLGRAEVTLTIDNSDGALPIDYTEVSVTRRMFRDGASEYEINGARAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
           ++D         + + + I      +  I      ERR +++     +  R
Sbjct: 121 LMDIQELLSDSGIGREMHIMVGQGKLAEILESRPEERRAYIEEAAGVLKHR 171


>gi|254826154|ref|ZP_05231155.1| chromosome segregation SMC protein [Listeria monocytogenes FSL
           J1-194]
 gi|255521157|ref|ZP_05388394.1| chromosome segregation SMC protein [Listeria monocytogenes FSL
           J1-175]
 gi|293595394|gb|EFG03155.1| chromosome segregation SMC protein [Listeria monocytogenes FSL
           J1-194]
          Length = 1186

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L         +    +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250



 Score = 36.8 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 196  KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLF 252
            +    R + +N   + ++    KE    +   +   +  +F +SF A+K E+A    +LF
Sbjct: 995  ERIQERFDFLNRQQADLLA--AKETLFKVMDEMDEEMKIRFSESFEAIKTEFAIVFPELF 1052

Query: 253  DGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
             G   + +      L+      ++     K   ++  S GE+ +  + +  A  R+    
Sbjct: 1053 GGGSAELVLLDPENLLTTGIDIVVQPPGKKLQNLSLRSGGERALTAIALLFAIIRV---- 1108

Query: 311  TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
                P  +LDE+ A LDE       R +     G+Q  +
Sbjct: 1109 -RPVPFCILDEVEAALDEANVTRFSRYLKQFESGTQFIV 1146


>gi|47097387|ref|ZP_00234938.1| chromosome segregation SMC protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|254831595|ref|ZP_05236250.1| hypothetical protein Lmon1_09588 [Listeria monocytogenes 10403S]
 gi|254899499|ref|ZP_05259423.1| hypothetical protein LmonJ_06784 [Listeria monocytogenes J0161]
 gi|254912362|ref|ZP_05262374.1| chromosome segregation SMC protein [Listeria monocytogenes J2818]
 gi|254936689|ref|ZP_05268386.1| chromosome segregation SMC protein [Listeria monocytogenes F6900]
 gi|47014235|gb|EAL05217.1| chromosome segregation SMC protein [Listeria monocytogenes str.
           1/2a F6854]
 gi|258609285|gb|EEW21893.1| chromosome segregation SMC protein [Listeria monocytogenes F6900]
 gi|293590343|gb|EFF98677.1| chromosome segregation SMC protein [Listeria monocytogenes J2818]
          Length = 1186

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L         +    +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250


>gi|121595344|ref|YP_987240.1| SMC domain-containing protein [Acidovorax sp. JS42]
 gi|120607424|gb|ABM43164.1| SMC domain protein [Acidovorax sp. JS42]
          Length = 406

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF 56
          ++++ L +  FR Y  L +   A+ T+ +G+NG GKT +L+AI+  L      
Sbjct: 1  MRLQRLTLENFRGYTCLEIGLGARLTLLLGENGAGKTTLLDAIAIGLGELMSH 53


>gi|302335831|ref|YP_003801038.1| condensin subunit Smc [Olsenella uli DSM 7084]
 gi|301319671|gb|ADK68158.1| condensin subunit Smc [Olsenella uli DSM 7084]
          Length = 1177

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 101/308 (32%), Gaps = 33/308 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L +  F+++A   ++ FD   T+ VG NG GK+NI +AI ++   +     R  +
Sbjct: 1   MYLKSLTLRGFKSFADKTQMAFDPGLTVVVGPNGSGKSNISDAILWVLGEQSAKMLRGQA 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   GS        A V  +   AD +I L+  +    R +         IN    R
Sbjct: 61  MEDVIFSGSSGRPAVGLAEVTLVLDNADHTIPLDFSELAVTRRMYRSGESEYLINGAPAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I +    ERR  ++        R R+     +
Sbjct: 121 LRDITDILHDSGLGKDTHSIISQGKLDSILASRPEERRELVEEAAGISKHRRRKERSQRK 180

Query: 164 -RLMRGRNRLLTEGYFD-SSWCSSIEAQM----------AELGVKINIARVEMINALSSL 211
            R M+       +   +       +E Q+          +EL +      V+ +  L   
Sbjct: 181 LRAMQENLTRAKDIEREIGRQLKPLERQVDKAKRHHDLASELSLLTTTLAVDDLRQLQQR 240

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
                +        + L  +   +        +    +K      +    RR      R 
Sbjct: 241 WRLLTEHGKEADAAIELAQYRLDEKSSELEKYQYLLEQKGIFVGDLGEQRRRMQDILGRM 300

Query: 272 DLIVDYCD 279
           D  +   +
Sbjct: 301 DSDMRLLE 308


>gi|322420360|ref|YP_004199583.1| SMC domain-containing protein [Geobacter sp. M18]
 gi|320126747|gb|ADW14307.1| SMC domain protein [Geobacter sp. M18]
          Length = 362

 Score = 63.4 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 126/393 (32%), Gaps = 62/393 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ------HTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           +K+K + I  F+   S     +         T  +GDNG GKT+IL+AI   +       
Sbjct: 1   MKLKNVLIRNFKGVRSAEFSMEGPSHHPRPLTALLGDNGSGKTSILQAI---ALTLSMAT 57

Query: 59  ASYADVTRIGSPSFF--------STFARVEGMEGLADISIKLETRDD------RSVRCLQ 104
               D++      F          +F  ++      +I++  E  +          R L+
Sbjct: 58  RRTRDLSSFNWHGFLPERVSNLGESFVELDVTFDQEEIALTTELFEAWQDSLPSETRQLK 117

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                 +  D   +  +     P      +       +FL R        + + +     
Sbjct: 118 RIVPPSQHTDVKLQFHQGRVRSPQGLEAVN-------QFLGR-------YYVKFLSKTRP 163

Query: 165 LMRGRNRLLTEGY---FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             + +  LL + +      +  S    ++A    K        +  L   ++ +      
Sbjct: 164 EFKEKFSLLGDVFWFDQHRNLGSVWFEEVAGEAQKREGW-QAGVEQLREYLVGWWGHHT- 221

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY--CD 279
                     +  +       L++ +       R +    R  ++ P  +D        D
Sbjct: 222 ---------TVQRRGKDFIEPLEKSFQSIFPGTRFVGIEPREDVVSPKANDFYFLMQRAD 272

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           +   +A  S+GEQ   +  +     RL    +    I+L+DE+  HL   ++  L   + 
Sbjct: 273 RVYDLAEMSSGEQ--AVFPLIYEFVRLDIQRS----IVLIDELELHLHPPEQQRLLAALP 326

Query: 340 DI--GSQIFMTGTDKSVFDSLNETAKFMRISNH 370
            I  G Q  +T T      S     + +R++  
Sbjct: 327 KIGSGCQYIIT-THSEFLSSAIPNEQEVRLAEG 358


>gi|313618315|gb|EFR90362.1| chromosome segregation protein SMC [Listeria innocua FSL S4-378]
          Length = 1186

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L         +    +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250


>gi|254852712|ref|ZP_05242060.1| chromosome segregation SMC protein [Listeria monocytogenes FSL
           R2-503]
 gi|300763883|ref|ZP_07073880.1| chromosome segregation SMC protein [Listeria monocytogenes FSL
           N1-017]
 gi|258606033|gb|EEW18641.1| chromosome segregation SMC protein [Listeria monocytogenes FSL
           R2-503]
 gi|300515619|gb|EFK42669.1| chromosome segregation SMC protein [Listeria monocytogenes FSL
           N1-017]
          Length = 1186

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L         +    +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250



 Score = 36.8 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 14/159 (8%)

Query: 196  KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLF 252
            +    R + +N   + ++    KE    +   +   +  +F +SF A+K E+A    +LF
Sbjct: 995  ERIQERFDFLNRQQADLLA--AKETLFKVMDEMDEEMKIRFSESFEAIKTEFAIVFPELF 1052

Query: 253  DGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
             G   + +      L+      ++     K   ++  S GE+ +  + +  A  R+    
Sbjct: 1053 GGGSAELVLLDPENLLTTGIDIVVQPPGKKLQNLSLRSGGERALTAIALLFAIIRV---- 1108

Query: 311  TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
                P  +LDE+ A LDE       R +     G+Q  +
Sbjct: 1109 -RPVPFCILDEVEAALDEANVTRFSRYLKQFESGTQFIV 1146


>gi|167758291|ref|ZP_02430418.1| hypothetical protein CLOSCI_00629 [Clostridium scindens ATCC 35704]
 gi|167664188|gb|EDS08318.1| hypothetical protein CLOSCI_00629 [Clostridium scindens ATCC 35704]
          Length = 1186

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 84/224 (37%), Gaps = 27/224 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           + +K + +  F+++A  ++  F    T  VG NG GK+N+ +A+   L   R    R  S
Sbjct: 1   MYLKSIEVQGFKSFAHKIKFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGGS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    I  +  T   +  R       IN    R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNSDHQLPIDFEEVTVARKLYRSGESEYLINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+ M   +
Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKNMS-VK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           +L   R  LL          + +E Q+  L  +   AR E +  
Sbjct: 180 KLEEERQNLLRVN----DILAELEKQVGPLERQAETAR-EYLKK 218


>gi|332071307|gb|EGI81802.1| DNA replication and repair recF domain protein [Streptococcus
           pneumoniae GA17545]
          Length = 70

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
           + + T  +PILLLD++ + LD  ++  L   ++    Q F+T T      +L E      
Sbjct: 1   MESITTESPILLLDDVMSELDNTRQLKLLETISQ-SIQTFITTTSLDHLQNLPENLSIFT 59

Query: 367 ISNHQA 372
           I + +A
Sbjct: 60  IQDGKA 65


>gi|323489555|ref|ZP_08094782.1| chromosome partition protein smc [Planococcus donghaensis MPA1U2]
 gi|323396686|gb|EGA89505.1| chromosome partition protein smc [Planococcus donghaensis MPA1U2]
          Length = 1182

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 95/264 (35%), Gaps = 39/264 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++A  + + F    T  VG NG GK+N+ +AI   L     +  R A 
Sbjct: 1   MFLKRLEVMGFKSFADRIGIDFVPGVTAVVGPNGSGKSNVTDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRV 112
             DV   GS S     F      ++  +G   +    + +  R  RS     + +     
Sbjct: 61  MEDVIFAGSDSRKPLNFAEVTLVLDNTDGRVPLDYSEVSVTRRVFRSGESAYLLNKQNCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S           + ERR   +             ++ ++
Sbjct: 121 LKDITDLFMDSGLGKEAFSIISQGRVDEILNSKAEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
           +  R +   +     D +    ++  + EL       R+E +   +S   +++   E   
Sbjct: 172 Q--RKKKAEIKLNETDENLNRVLDI-LHEL-----DGRMEPLQIQASTARDFLDMNEQLK 223

Query: 223 HIKLSLTGFLDGKFDQSFCALKEE 246
              ++L  +  G  ++    L+ E
Sbjct: 224 DADIALLAYDAGNLEKELSQLENE 247


>gi|119486512|ref|ZP_01620570.1| hypothetical protein L8106_00920 [Lyngbya sp. PCC 8106]
 gi|119456414|gb|EAW37545.1| hypothetical protein L8106_00920 [Lyngbya sp. PCC 8106]
          Length = 382

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 67/372 (18%), Positives = 122/372 (32%), Gaps = 48/372 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  FR + S  L    +  + VG+N  GKT+ILEAI FL   R      +  +  
Sbjct: 2   LKTLKIENFRGFQSFELQSLGRVNLLVGENNSGKTSILEAIQFLLCSRTNLEPLFKTMIE 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD-ELNKHLRISWL 125
            G  S      R E    +  +    +   D       +++   + V   ++     S L
Sbjct: 62  RGEYSLTRDNIRTETELEIRHLFHGHDIDIDSQFSISSLDESDHKKVTISIHSIPSTSEL 121

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P  +              +  V  +      R               +E     +W   
Sbjct: 122 EPDSES--DEQLSYENLSANDSVELVKLGFNIRWN-------------SENQESENWERP 166

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQK---------ENFPHIKLSLTGFLDGKF 236
           + +        I + R+ + N   + + +++           E F  I L+    L  + 
Sbjct: 167 LSSNGGLSDRYIRMNRLRLSNKNINSVTQFITSSSLSIEMMIELFEDIVLTSEEKLVYEA 226

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ--KV 294
            Q+     E  A       +  S              +V   D+   I  GS G+   ++
Sbjct: 227 LQTIEPTIERIASISSKIYRSSSSRGG---------FVVLLSDREQRIPIGSLGDGIWRM 277

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV----TDIGSQIFMTGT 350
           + + + LA             +LL+DEI   L     + L++++      +  Q+F T  
Sbjct: 278 LGLSLALASV--------KGGVLLVDEIDTGLHYSTMSDLWKLIWEAAKKLDVQVFATTH 329

Query: 351 DKSVFDSLNETA 362
           +   + SL   A
Sbjct: 330 NSDCWTSLASIA 341


>gi|58266006|ref|XP_570159.1| DNA repair-related protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57226392|gb|AAW42852.1| DNA repair-related protein, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1125

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 14/124 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK +++ +F  +  L + F  +    VG NG GK+ +L AI+    G+     R     D
Sbjct: 99  IKSISLIDFMCHRHLTVDFGPRMNFVVGHNGSGKSAVLTAIAVALGGKANLTGRGTGLKD 158

Query: 64  VTRIGSPSFFSTFARVEGMEG-----------LADISIKLETRDDRSVRCLQINDVVIRV 112
           + R G+     T       +            + + +I          +  +    +   
Sbjct: 159 LIRTGAERAVITITLANSGDSAYRPEVYNPNIVIERTIHSNGSSGYKFKASKDGKTIANK 218

Query: 113 VDEL 116
             EL
Sbjct: 219 RSEL 222


>gi|225174508|ref|ZP_03728507.1| SMC domain protein [Dethiobacter alkaliphilus AHT 1]
 gi|225170293|gb|EEG79088.1| SMC domain protein [Dethiobacter alkaliphilus AHT 1]
          Length = 1021

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 10/134 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  L++   + Y    + F        G NG GKT I+EAI  +     F   +    
Sbjct: 1   MKIYELHLKNCKCYEDETINFQEGLNFISGVNGAGKTTIIEAIGLVLF--NFLPYNAKQF 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI-- 122
            R G  S     A +E  +      I+   +  ++++    ++     +DEL+    +  
Sbjct: 59  VRDGKKSG-EIQALIEAKDERLYRIIRKFNKTTKTLKWEVYDEETNTCLDELHGSDDVSR 117

Query: 123 -----SWLVPSMDR 131
                  + P    
Sbjct: 118 WIKESIGIDPEDSL 131



 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 61/206 (29%), Gaps = 41/206 (19%)

Query: 172  LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI-----NALSSLIMEYVQKENFPHIKL 226
             L +   D+        ++ +   +    R +++       L+  I E ++    P   +
Sbjct: 824  YLEQIKKDAKRLKEQLDELLKKKSQWEQNRYKLLVKNKTRELAQTIRETIKDAADPVAHV 883

Query: 227  SLTG--------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                        +     +        EY  +L D        R                
Sbjct: 884  YRQYLSAEANEIYRHVSNENVQVEWASEYELQLKDNFHAKERVRV--------------- 928

Query: 279  DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
                     S GEQ    + + LA  +++S+      +   DE + +LD  +R  L   +
Sbjct: 929  -----FKQLSGGEQMTAALAVRLALMKMLSDVK----LGFFDEPTTNLDSSRRQNLAMAI 979

Query: 339  TDI---GSQIFMTGTDKSVFDSLNET 361
                    Q+F+       FD+L E 
Sbjct: 980  QKSTKGFEQLFVIS-HDDAFDTLTEN 1004


>gi|22299468|ref|NP_682715.1| chromosome segregation SMC protein [Thermosynechococcus elongatus
           BP-1]
 gi|22295651|dbj|BAC09477.1| chromosome segregation SMC protein [Thermosynechococcus elongatus
           BP-1]
          Length = 1168

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 31/220 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK L ++ F+++     +      T+  G NG GK+N+L+A+ F   L+  +G R   
Sbjct: 1   MYIKRLELTNFKSFGGTTVIPLLPGFTVISGPNGSGKSNLLDALLFALGLAGSKGMRAER 60

Query: 61  YADVTRIGSP--SFFSTFARVE---GMEGLADISIKLETRDDRSV---RCLQINDVVIRV 112
             D+               RV     ++   +  +    R  +         +ND     
Sbjct: 61  LPDLVNHSQTRRGHSVVETRVTVTFALDAETEWRVTRRLRVTKQGSYTSTYAVNDQPC-T 119

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++EL+  L+   + P    +             +  RR  +D +           + DF+
Sbjct: 120 LNELHDQLQAFCIYPQGYNVVLQGDVTSMISMNAKARREIIDELAG---------VADFD 170

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           R +      L            +E ++ +   ++   R+ 
Sbjct: 171 RKIAQAREKLDTVKEREERFRIVERELIQQRDRLQRERLH 210


>gi|313623279|gb|EFR93522.1| chromosome segregation protein SMC [Listeria innocua FSL J1-023]
          Length = 1186

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L         +    +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250


>gi|209523386|ref|ZP_03271941.1| SMC domain protein [Arthrospira maxima CS-328]
 gi|209496128|gb|EDZ96428.1| SMC domain protein [Arthrospira maxima CS-328]
          Length = 403

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/363 (15%), Positives = 117/363 (32%), Gaps = 59/363 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L I+ FR +      F     + VG NGVGK+++L+A+               ++
Sbjct: 1   MQINHLKITNFRGFEQAEFEFQPGMNLIVGINGVGKSSVLDALRIA------FSRILPEL 54

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           T          F   + M G  ++ +++           +++       +      +I  
Sbjct: 55  T--DCQERRINFNIDDIMIGKTELKVEINVDISGIPFRCKVSRGKRHEQELKPDGYQI-- 110

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  +      +       +V+    R      D        NR L  G   +++  
Sbjct: 111 -----LGLIKDDPNQP-----LVVYCATRRSIVTEQDLNP-----NRSL--GNQSAAFVD 153

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++  +M  L   I+   V+    L     +  Q      +  ++T FLD   +       
Sbjct: 154 ALIPRMLRLREFIDWWLVQ--EELLDEKPQLTQGR-IDALNDAVTCFLDWCNNVRAVPAS 210

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI----F 300
           + Y K                       L++D     + I   S GE+ ++ + +     
Sbjct: 211 DTYKKP---------------------TLLLDKNGVTLNINQLSDGERGILALILDLVQR 249

Query: 301 LAHA--RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFD 356
           L  A   L +       ++L+DE+  HL    +  +   +T+I    Q   T     +  
Sbjct: 250 LLQANPELENPVQDGKAVVLIDELDLHLHPQWQRMVVHKLTEIFPNCQFIATTHSPQMIG 309

Query: 357 SLN 359
            + 
Sbjct: 310 EVK 312


>gi|16800984|ref|NP_471252.1| hypothetical protein lin1918 [Listeria innocua Clip11262]
 gi|16414419|emb|CAC97148.1| smc [Listeria innocua Clip11262]
          Length = 1186

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 89/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L         +    +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTEKLAEVRKEFGE 250


>gi|288560363|ref|YP_003423849.1| DNA double-strand break repair protein Rad50 [Methanobrevibacter
           ruminantium M1]
 gi|288543073|gb|ADC46957.1| DNA double-strand break repair protein Rad50 [Methanobrevibacter
           ruminantium M1]
          Length = 932

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 31/174 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +  K L +  F+++A   L  D   ++ VG+NG GK++I EAISF +  + +   +  D+
Sbjct: 1   MIFKHLQLKNFKSHADTELDLDLGISLIVGENGAGKSSIFEAISF-ALFKNYTTNNITDL 59

Query: 65  TRIGS------PSFFSTFARVEGMEGLAD------------------ISIKLETRDDRSV 100
            R                   EG E + +                  IS   +  + R  
Sbjct: 60  VRTNKNLDEKIEMSVKLTFLCEGNEYMVERGGILSPSKTKSKPNFKSISNLFKISNGRED 119

Query: 101 RCLQINDVVIRVVDELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMV 148
                N  V R ++EL      ++L         +  +       R++ + +++
Sbjct: 120 IIASGNKEVDRQIEELLNMNSSTFLNAIYIRQGEISALIDDTPANRKKLITKLL 173



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 7/105 (6%)

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           ++ +   +    I   S GE+  + + + L   + +S   G    +LLDE + HLD  +R
Sbjct: 828 NISIFGPEGEANIDMVSGGEKIAIALALRLGITQAMSK--GNIETILLDEPTIHLDSFRR 885

Query: 332 NALFRIVTDIGS--QIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
             L  ++  +    Q+ +  T  +  ++  +T   + +   + + 
Sbjct: 886 QELINVLRSMSIIPQMII-VTHDTELETAADT--LISVEKEEGIS 927


>gi|257784654|ref|YP_003179871.1| chromosome segregation protein SMC [Atopobium parvulum DSM 20469]
 gi|257473161|gb|ACV51280.1| chromosome segregation protein SMC [Atopobium parvulum DSM 20469]
          Length = 1179

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 107/294 (36%), Gaps = 43/294 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L +  F+++A   ++VFD   T+ VG NG GK+N+ +AI ++   +     R  +
Sbjct: 1   MYLKSLTLKGFKSFADKTQMVFDPGLTVVVGPNGSGKSNVSDAILWVLGEQSAKMLRGQA 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   GS +      A V  +   +D +I ++  +    R +         IN    R
Sbjct: 61  MEDVIFSGSSARGAVGVAEVTLVLDNSDHTIPIDFSEIGITRRMYRSGESEYLINGAPSR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD----------------RM 147
           ++D         L K          +D I S    +RR  ++                R 
Sbjct: 121 LMDIQDILHDSGLGKDTHSIISQGKLDSILSSRPEQRRELIEEAADISKHRRRKERAERK 180

Query: 148 VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN- 206
           + ++D    R  +    + R   + L      +S    + AQ+ +L V++ +  +  +  
Sbjct: 181 ISSMDENLTRAKVVSREITRQ-LKPLERQVDKASRAKDLSAQLKDLTVQLAVDDLRQLQF 239

Query: 207 ---ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
               L     E          + S     + +  QS    K  +   L + R+ 
Sbjct: 240 AHSKLEVRAKEAEAAIELAQYRAS-EKNRELEKLQSLLEQKGLFVGDLGEQRRR 292


>gi|331266251|ref|YP_004325881.1| chromosome condensation and segregation SMC protein [Streptococcus
           oralis Uo5]
 gi|326682923|emb|CBZ00540.1| chromosome condensation and segregation SMC protein [Streptococcus
           oralis Uo5]
          Length = 1179

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 106/283 (37%), Gaps = 37/283 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   IK+E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNEDGFIKDAGQVIKVERHIYRSGDSEYRIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR----------VEMINALSSLIM 213
             ++     L            ++ Q+  L  +   AR             ++ L + I 
Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLAKQAENARKFLDLDGQRKAIYLDVLVAQIK 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           E   +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 236 ENKAELELTEEELTQVQELLTSYYQKREELEEE-NQSLKKKRQ 277


>gi|86607501|ref|YP_476264.1| chromosome segregation protein SMC [Synechococcus sp. JA-3-3Ab]
 gi|86556043|gb|ABD01001.1| chromosome segregation protein SMC [Synechococcus sp. JA-3-3Ab]
          Length = 1180

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/293 (19%), Positives = 102/293 (34%), Gaps = 50/293 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + ++ F+++ ++  L      T+  G NG GK+NIL+ I F   LS  RG R   
Sbjct: 1   MYIKRIELTRFKSFGSTTSLPLLPGFTVISGPNGSGKSNILDGILFALGLSSSRGMRAER 60

Query: 61  YADVTRIGS-------PSFFSTFARV----EGMEGLADISIKLETRDDRS--------VR 101
            +D+   GS        +  +    +    +G      +S +L     +           
Sbjct: 61  LSDLVHSGSLSSNRRVETHVAVTFDLGPGEDGQPREWKVSRRLRVSPGKGEDPDSLPYTS 120

Query: 102 CLQINDVVIRVVDELNKHLRISWLVP---------SMDRIFSGLSMERRRFLDRMVFAID 152
              INDV    + EL++ L    + P          +  I S  S ERR+ LD +     
Sbjct: 121 TFYINDVPC-TLSELHEQLEAMHIYPNGYNVVLQGDVTSIISMNSKERRQILDELAG--- 176

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
                 +  F+R +   N  L            IE +    G ++           S   
Sbjct: 177 ------VATFDRKIAQANAKLEVVREQIERFRLIEQEWQAQGERLLRE--------SEKA 222

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
            +Y Q              L  +  Q+     +   ++L + ++  +   +TL
Sbjct: 223 QQYQQLRLQWQTLERQQRVLLWRHLQAQVEATQAAIRQLLEAQEQATAQVQTL 275


>gi|289582094|ref|YP_003480560.1| SMC domain protein [Natrialba magadii ATCC 43099]
 gi|289531647|gb|ADD05998.1| SMC domain protein [Natrialba magadii ATCC 43099]
          Length = 924

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 98/290 (33%), Gaps = 34/290 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-RGFRRASYAD 63
           +++  + +  F+ Y    L  +   T+  G NG GK+ +LEA+ F   G +     +  D
Sbjct: 1   MRVDRVRMLNFKCYGDADLTLERGVTVVHGVNGSGKSTLLEAVFFALYGSKALDDRTLDD 60

Query: 64  VTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRC--------LQINDVVIRVVD 114
           V   G   S    +   +  E   +  +KL      + +C        ++    V + V 
Sbjct: 61  VITTGENESEVELWFTHDNREYHIERHLKLRGDRATTTKCVLETPEDTIEGARDVRKTVT 120

Query: 115 ELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFERLMR 167
           EL +    +++         ++++      ER+  +D ++       +R R  D    ++
Sbjct: 121 ELLRMDAEAFVNCAYVRQGEVNKLIHASPSERQDMIDDLLQLGALEEYRERASDARLGVK 180

Query: 168 -----GRNRL--------LTEGYFDSSWCSSIEAQMAELGVKINIA---RVEMINALSSL 211
                 R  L          E        +++E +  EL  +I+     R + +  L   
Sbjct: 181 SVLDGQREVLDDVRSQVEQKEEQDLHETLNTLEKERDELTEQIDHYEAQRDQAVETL-ET 239

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             E +++      ++   G             + +      + R+     
Sbjct: 240 AQEVLERHEETREEIETLGEEIDDLQSKITETERDREDAKDEIRERKEAR 289


>gi|308270740|emb|CBX27350.1| hypothetical protein N47_H21720 [uncultured Desulfobacterium sp.]
          Length = 622

 Score = 63.4 bits (153), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 66/363 (18%), Positives = 129/363 (35%), Gaps = 52/363 (14%)

Query: 5   IKIKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + ++ L I+ ++N +    + F     + VG+NGVGKT I++AI  +     F R   ++
Sbjct: 1   MFLETLEIAGYKNFHKEFTVHFSKGLNVLVGENGVGKTAIIDAIRLILLEDEFGRRGVSE 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL----QINDVVIRVVDELNKH 119
                   F   F           I I+    +   +        +N      +D  NK 
Sbjct: 61  ------SDFHCPFQESATPVDTFRIQIQFGDLNREEMVVFLPWSNLNGSAKLTLDVENKQ 114

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRMIDFERLMRG-R----NRLL 173
                  P    +  G +  R    +  +F  I+  +   + D E  +R  R     RLL
Sbjct: 115 NNQGHFRP----LRWGGAS-RASAFEWELFDTINCIYLPPLRDAEAKLREGRGSRLARLL 169

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI---KLSLTG 230
                D     ++E ++ +    + I +   I+  + +I +  QKE    +    +S+  
Sbjct: 170 RSLNKDDESQKNVENRVKKFNKDLAIEKTGPISKANEIIRKR-QKEALGTVFGQDISIR- 227

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           F +  F++   +L+  +  K+      D          +  +  + Y +           
Sbjct: 228 FSETNFNRIVESLRVLFFPKINSTSNQDLFR-------NLEENSLGYNN----------- 269

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF----RIVTDIGSQIF 346
              ++ +   LA     S    +  +LL++E  AHL    +  L        TD   Q+ 
Sbjct: 270 ---LIYLATVLAELTNESKDAEYLKMLLIEEPEAHLHPQLQLRLLRYLENTATDSSVQVI 326

Query: 347 MTG 349
           +T 
Sbjct: 327 VTT 329


>gi|271499011|ref|YP_003332036.1| SMC domain-containing protein [Dickeya dadantii Ech586]
 gi|270342566|gb|ACZ75331.1| SMC domain protein [Dickeya dadantii Ech586]
          Length = 386

 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 56/382 (14%), Positives = 125/382 (32%), Gaps = 55/382 (14%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           IK + ++ F ++  ++  +   A   + VG NG GK+N+LEAI  L      R A    +
Sbjct: 2   IKSIQLTNFLSFGASTQPIELKA-LNVIVGPNGSGKSNLLEAIELL------RNAPDK-L 53

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                          +G +G    ++     + +  + L+          E+ +   +  
Sbjct: 54  ITPIRDGGGVNDWLWKGGQGKPTATLNAVFTNPKGPQSLR----YQLSFTEVAQRFEMV- 108

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                +RI +    +            +P       +    +  +N+       D     
Sbjct: 109 ----DERIENEHPAD---------GHPEPYFYYHFNNARPTLNVKNKKRALQLEDIDLEK 155

Query: 185 SIEAQ------------MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT--G 230
           SI AQ            +A+   +I + R       +             H++ + T  G
Sbjct: 156 SILAQRRDPDQYPEITYLAQELARIRLYREWSFGRYTPPRQPQKADLPNDHLEPTCTNLG 215

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGST 289
            +  +  +    +K+   K L      D +    +     +  +  +  +  I     S 
Sbjct: 216 LVLNRLRRDPL-VKQRLLKALQALY--DGIDDYDVQIEGGTVQVFFHEGRFTIPATRLSD 272

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
           G  + + +   L H           P++ L+E    L  D    L  ++ D    +Q+ +
Sbjct: 273 GTLRYLCLLAVLCH-------PNPPPLICLEEPELGLHPDVLPTLGELLKDASNRTQLIV 325

Query: 348 TGTDKSVFDSLNETAKFMRISN 369
           T     + D++++    + ++ 
Sbjct: 326 TTHSDVLVDAMSDQPDAVLVAE 347


>gi|225561077|gb|EEH09358.1| Smc5-6 complex SMC subunit Smc5 [Ajellomyces capsulatus G186AR]
          Length = 1159

 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 79/270 (29%), Gaps = 21/270 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I  + + +F  Y S       +  + +G NG GK+ ++ AI   L  G     R    A+
Sbjct: 127 IVRVKLRDFVTYTSAEFFPGPRLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPAE 186

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKHLR 121
             + G           +G     +  I+       +     IN          EL K   
Sbjct: 187 FVKHGCEEATIEIELAKGRNHRENPVIRRTIVRKGNKSTFTINGKPSSKASVLELAKSFS 246

Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           I        +P                      A  P+  +   D + L   + +LL   
Sbjct: 247 IQIDNLCQFLPQDKVAEFAALSPIELLHSTQRAAAGPQMLQWHEDLKSLRAEQKKLLAAN 306

Query: 177 YFDSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
             +    +++    +M    V+  + R      +   I    +    P  + ++    + 
Sbjct: 307 AGEREQLANLVNRQEMQREDVQRMLQR----ARIQKKIAVLERSRPVPRYQEAVQALKEA 362

Query: 235 K-----FDQSFCALKEEYAKKLFDGRKMDS 259
           +       Q    L+ + A  L    K + 
Sbjct: 363 QRARRTLQQEHENLENQLAPALKSVNKKEK 392


>gi|241762645|ref|ZP_04760717.1| SMC domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241372783|gb|EER62495.1| SMC domain protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 468

 Score = 63.0 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 62/376 (16%), Positives = 125/376 (33%), Gaps = 73/376 (19%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR----ASYAD 63
           K ++I  FR   +    F  +  + VG NG GKT++L++I+ L      R     +S   
Sbjct: 11  KKISIKNFRGIQNADFDFCNKVNLIVGINGAGKTSVLDSIALLLSWLINRTLNKNSSGQP 70

Query: 64  V----TRIGS-PSFFSTFARVEGMEG---LADISIKLETRDDRSVRCL--QINDVVIRVV 113
           +     R G   +  S     +  +    L      L  R  +S   L   ++      +
Sbjct: 71  INDLSIRNGCREAALSITVNYDNQDFNWMLVKTGRGLNARSQKSELSLLAALSKRFQIEL 130

Query: 114 DELNKHLRISWLV--PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG--- 168
           D  N    +   V  P    I   + + RRR           +   ++  ++  +     
Sbjct: 131 DNKNDEASLPLFVYYPVDRAIVK-VPIRRRR----------RQAFSQLSAYDEALNPNVN 179

Query: 169 --------RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
                   R          ++   S++  +++    +  A           I E +++  
Sbjct: 180 FKSFFEWFRFEQEKHNSSLANLLHSMD--LSDTDSLLFKA-----TKYRKTIKEILKELY 232

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
            P         L  K  ++ C    E+     D R +    R          ++++    
Sbjct: 233 NP---------LSSKGLKAVCQAIYEFMPGFSDLRVLYEPLR----------MVIEKEGV 273

Query: 281 AITIAHGSTGEQKVVLVG------IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
            + +   S GE+ ++ +       + LA+  + +   G A I+L+DEI  HL    +  +
Sbjct: 274 HLNLLQLSGGEKCMLALIGDIARRLVLANPSMDNPLKGKA-IILIDEIDLHLHPRWQKNI 332

Query: 335 FRIVTDI--GSQIFMT 348
              +       Q  +T
Sbjct: 333 IERLNSTFPNCQFIIT 348


>gi|315924202|ref|ZP_07920428.1| chromosome segregation protein Smc [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622604|gb|EFV02559.1| chromosome segregation protein Smc [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 1192

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 107/297 (36%), Gaps = 41/297 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L I+ F+++A  + L FD      VG NG GK+NI++AI ++      +  R   
Sbjct: 1   MHLKSLRITGFKSFADTVELSFDQMIAAIVGPNGSGKSNIIDAIRWVLGEQRSKSLRGKR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGL---ADISIKLETRDDRSVRCL-QINDVVIR 111
             DV   GS      ++      ++   G        + +  R  RS   + +IN   +R
Sbjct: 61  MEDVIFSGSDYHKPMNYAEVVLTLDNGSGYLADQPDEVSVTRRIFRSGESVYKINGRQVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR------ 157
           + D         L ++        S++ I +      R  ++  V  ++ + R+      
Sbjct: 121 LKDIQAIFADTGLGRNGYSIVGQGSIENIVNSSPQALREIVEEAVGIVNYKMRKQEAERE 180

Query: 158 ---RMIDFERLM-------RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
                 + +R++       R R  L  +      +   +  ++  + +     R      
Sbjct: 181 LTTAQENMDRVLDILEELNRQRKPLEKQSAKAKRYLK-LREELKAVDLFRFDERWR---D 236

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
           LS  + +        + ++  T       D  +  L+ +   +L     +++ +  T
Sbjct: 237 LSDRLAQSDAHIADANAQIKQTEIALHDADARYQRLRVQNRNQLVAQEDLEAQAEST 293


>gi|33578097|gb|AAQ22369.1| chromosomal segregation protein [Methanococcus voltae PS]
          Length = 1199

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63
           I  +++  F+++ + +L      T  +G NG GK+N ++ I F+   +  +  R   +  
Sbjct: 4   ISEIHLKNFKSFKNTKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +    +    + +A V       +  I +++      R +++N 
Sbjct: 64  LITYHNGKR-ADYAEVTLFFDNINREIPIDSDKVGICRKVKLNG 106


>gi|15669839|ref|NP_248653.1| chromosome segretation protein [Methanocaldococcus jannaschii DSM
           2661]
 gi|18202582|sp|Q59037|SMC_METJA RecName: Full=Chromosome partition protein smc homolog
 gi|2826443|gb|AAB99663.1| chromosome segretation protein (smc1) [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 1169

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 60/163 (36%), Gaps = 24/163 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63
           ++ + +  F+++  L L      T  VG NG GK+NI++AI F+   +  +  R   ++ 
Sbjct: 4   LEKIELKNFKSFKKLSLDIPKGFTAIVGPNGSGKSNIVDAILFVLGKTSAKKLRANRFSG 63

Query: 64  VTRI----------------GSPSFFSTFARVEGMEGLADISIK-----LETRDDRSVRC 102
           +                      + F+  A   G+      S +     +   +D+  R 
Sbjct: 64  LITYHNGKRADFAEVCLYFTNENNAFNVNADKVGILRRIKSSGETDYYLVWKENDKEKRK 123

Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
                 +I +   L            + +I +   +ERR+ +D
Sbjct: 124 KMTKHEIIDLFRRLGLLGDNVISQGDLLKIINISPIERRKIID 166


>gi|291527523|emb|CBK93109.1| Predicted ATP-binding protein involved in virulence [Eubacterium
           rectale M104/1]
          Length = 430

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 71/386 (18%), Positives = 140/386 (36%), Gaps = 63/386 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---------SPGRG 55
           +K+  + +  F+   +L +  D + T+  G NGVGK+ IL+AI  L            R 
Sbjct: 1   MKLNSIILQNFKGIDNLEIKLDNKTTVIFGVNGVGKSTILQAIDLLYADIIAKLMGTVRS 60

Query: 56  FRRASYA-DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
            + A +  D    G  S     A  +  +G    SI  E   DR+ +  + N   ++ + 
Sbjct: 61  -KTARFNEDFISYG-KSAAGIKADFDFGDGE---SIYYERTIDRA-KGEKRNTSALKKLT 114

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           +  + L I       +  +   S  +    F++  V  I       +    R  +   + 
Sbjct: 115 DKFQSLYIQMGYDDGNGNWIEESDNKSMPIFVNYGVNRI------VLDVPVRAPKE--QF 166

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           +    FD +  S+I+                    L          EN   IK+      
Sbjct: 167 VKLDAFDKAIESTID-----------------FRNLFKWFRNQEDIEN--QIKVRNDSDY 207

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           +   D+S  A+K+     L DG +   + RR L       + V+   K++ I   S GE+
Sbjct: 208 E---DKSLAAVKKAMLAML-DGFEDIRIERRPLA------MKVNKNGKSLKIDQLSDGEK 257

Query: 293 KVVL----VGIFLAHARLISNT--TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQ 344
             +     +   +A A    +      + ++L+DE+  H+    +  +  ++ D     Q
Sbjct: 258 CTIALFGDLARRMALANPGKDVNPLEGSGVVLIDELDLHMHTSWQRKVLNVLRDTFPNIQ 317

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNH 370
             +T     +   ++++   + + N 
Sbjct: 318 FIITTHSPQILGEMDDSVNLLYLYNE 343


>gi|190572118|ref|YP_001969963.1| hypothetical protein Smlt0029 [Stenotrophomonas maltophilia
          K279a]
 gi|190010040|emb|CAQ43646.1| conserved hypothetical protein [Stenotrophomonas maltophilia
          K279a]
          Length = 575

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
          +I+ L I  FR+  +L           +G    GK+ IL+AI      R  R  S+ D+ 
Sbjct: 3  RIRHLAIRNFRSIKALDWSPAPGINCLIGPGDSGKSTILDAIDLCLGAR--RSISFGDMD 60

Query: 66 RIG 68
             
Sbjct: 61 FFD 63


>gi|227827239|ref|YP_002829018.1| hypothetical protein M1425_0926 [Sulfolobus islandicus M.14.25]
 gi|229584460|ref|YP_002842961.1| hypothetical protein M1627_0993 [Sulfolobus islandicus M.16.27]
 gi|238619424|ref|YP_002914249.1| hypothetical protein M164_0973 [Sulfolobus islandicus M.16.4]
 gi|227459034|gb|ACP37720.1| conserved hypothetical protein [Sulfolobus islandicus M.14.25]
 gi|228019509|gb|ACP54916.1| conserved hypothetical protein [Sulfolobus islandicus M.16.27]
 gi|238380493|gb|ACR41581.1| conserved hypothetical protein [Sulfolobus islandicus M.16.4]
          Length = 110

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          IK L I  F++Y      F  +  I VG NG GKTN+++A SFL
Sbjct: 2  IKRLRIKNFKSYRDSEFEFG-KVNIVVGPNGSGKTNLVDAFSFL 44


>gi|260437030|ref|ZP_05790846.1| SMC family protein [Butyrivibrio crossotus DSM 2876]
 gi|292810339|gb|EFF69544.1| SMC family protein [Butyrivibrio crossotus DSM 2876]
          Length = 1190

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 48/232 (20%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ L   FD   T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1   MYLKKIEVQGFKSFANKLLFEFDNGITGIVGPNGSGKSNIADAVRWVLGEQSAKQLRGSK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   G+      SF S    ++  +   DI     T   R  R       +N    R
Sbjct: 61  MEDIIFAGTETRKPVSFASVSLTIDNSDKKLDIDYSEVTVTRRVFRSGESEYLLNGNTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG + ERR   D     +    ++R  + +
Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKAEERRELFDEAAGIVK--FKKRKNETQ 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
           + +   ++ L          + +E Q+  L  + +    E +  L   + +Y
Sbjct: 179 KSLDNESQNLIRIN---DILAELEKQVGPLARQ-SDKAKEYL-RLKEYLKKY 225


>gi|251791211|ref|YP_003005932.1| SMC domain-containing protein [Dickeya zeae Ech1591]
 gi|247539832|gb|ACT08453.1| SMC domain protein [Dickeya zeae Ech1591]
          Length = 386

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 55/382 (14%), Positives = 125/382 (32%), Gaps = 55/382 (14%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           IK + ++ F ++  ++  +   A   + VG NG GK+N+LEAI  L      R A    +
Sbjct: 2   IKSIQLTNFLSFGASTQPIELKA-LNVIVGPNGSGKSNLLEAIELL------RNAPDK-L 53

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                     +    +G +G    ++     + +  + L+          E+ +   +  
Sbjct: 54  ITPIRDGGGVSDWLWKGGQGKPTATLNAVFTNPKGPQSLR----YQLSFTEVAQRFEMV- 108

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                +RI +    +            +P       +    +  +N+       D     
Sbjct: 109 ----DERIENEHPAD---------GHPEPYFYYHFNNARPTLNVKNKKRALQLEDIDLEK 155

Query: 185 SIEAQ------------MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT--G 230
           SI AQ            +A+   +I + R       +             H++ + T  G
Sbjct: 156 SILAQRRDPDQYPEITYLAQELARIRLYREWSFGRYTPPRQPQKADLPNDHLESTCTNLG 215

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGST 289
            +  +  +    +K+   K L      D +    +     +  +  +     I     S 
Sbjct: 216 LVLNRLRRDPL-VKQRLLKALQALY--DGIDDYDVQIEGGTVQVFFHEGTITIPATRLSD 272

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
           G  + + +   L H           P++ L+E    L  D    L  ++ +    +Q+ +
Sbjct: 273 GTLRYLCLLAVLCH-------PNPPPVVCLEEPELGLHPDVLPTLGELLKEASNRTQLIV 325

Query: 348 TGTDKSVFDSLNETAKFMRISN 369
           T     + D++++    + ++ 
Sbjct: 326 TTHSDVLVDAMSDQPDAVLVAE 347


>gi|210612576|ref|ZP_03289367.1| hypothetical protein CLONEX_01569 [Clostridium nexile DSM 1787]
 gi|210151501|gb|EEA82508.1| hypothetical protein CLONEX_01569 [Clostridium nexile DSM 1787]
          Length = 1186

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 33/214 (15%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+  L  F    T  VG NG GK+N+ +A+   L     +  R  +
Sbjct: 1   MYLKSIEVQGFKSFANKILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    I  +  T   +  R       IN    R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNSDHQLAIDFEEVTVARKIYRSGESEYLINGSPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +            
Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIV------------ 168

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
           +  + +N  + +   +      +   +AEL  +I
Sbjct: 169 KFKKRKNMSVKKLEEERQNLVRVNDILAELEKQI 202


>gi|39655001|pdb|1US8|A Chain A, The Rad50 Signature Motif: Essential To Atp Binding And
          Biological Function
          Length = 147

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K++ + +  FR+++   + F     + +G NG GK+++L+AI
Sbjct: 1  MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43


>gi|254425299|ref|ZP_05039017.1| RecF/RecN/SMC N terminal domain, putative [Synechococcus sp. PCC
          7335]
 gi|196192788|gb|EDX87752.1| RecF/RecN/SMC N terminal domain, putative [Synechococcus sp. PCC
          7335]
          Length = 1007

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          ++R+  K L +  F +Y  + L F         G NG GK+++LEAI++   G+  R ++
Sbjct: 3  SHRMVPKQLKLQNFLSYQEVVLDFAGLHVACVCGPNGAGKSSLLEAIAWCIWGQS-RVSA 61

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98
            D+ R GS     +F   +G +    I  +   ++  
Sbjct: 62 EDDIVRQGSLEAQVSFCFEQGGQSYRIIRTRRRCQNST 99


>gi|9954932|pdb|1F2T|A Chain A, Crystal Structure Of Atp-Free Rad50 Abc-Atpase
 gi|9954934|pdb|1F2U|A Chain A, Crystal Structure Of Rad50 Abc-Atpase
 gi|9954936|pdb|1F2U|C Chain C, Crystal Structure Of Rad50 Abc-Atpase
          Length = 149

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K++ + +  FR+++   + F     + +G NG GK+++L+AI
Sbjct: 1  MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43


>gi|169350201|ref|ZP_02867139.1| hypothetical protein CLOSPI_00945 [Clostridium spiroforme DSM 1552]
 gi|169292984|gb|EDS75117.1| hypothetical protein CLOSPI_00945 [Clostridium spiroforme DSM 1552]
          Length = 981

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 26/185 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A  + + F    T  VG NG GK+N+ +AI   L     +  R +S
Sbjct: 1   MYLKRIELHGFKSFADKVNIEFQPGITGIVGPNGCGKSNVADAIRWVLGEQSVKSLRGSS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG-----LADISIKLETRDDRSVRCLQINDVVI 110
            +DV   GS               +  +        ++ I        +     IN    
Sbjct: 61  MSDVIFAGSEDRRAQNLAEVTLVFDNTDRYMKYDYNEVEITRRLYRQNNEAEYLINKQQC 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRM 159
           R + ++   +  + L      I S             ERR   +    V     R    +
Sbjct: 121 R-LKDIVDLIMDTGLGRDSLSIISQGNISSFADSKPEERRGIFEEAAGVSKYKKRKLESI 179

Query: 160 IDFER 164
              ER
Sbjct: 180 RKLER 184


>gi|15899022|ref|NP_343627.1| purine NTPase [Sulfolobus solfataricus P2]
 gi|284175108|ref|ZP_06389077.1| purine NTPase [Sulfolobus solfataricus 98/2]
 gi|18202628|sp|Q97WH0|RAD50_SULSO RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|13815551|gb|AAK42417.1| Purine NTPase [Sulfolobus solfataricus P2]
 gi|261600766|gb|ACX90369.1| Rad50 zinc hook domain protein [Sulfolobus solfataricus 98/2]
          Length = 864

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  + ++ F ++    + F  +  + VG NG GK++I++ I   S  R   R +  ++
Sbjct: 1   MRIDKITLTNFLSHEHSEIQFMGEINVIVGQNGAGKSSIIDGI-VFSLFRTHSRGNNDNL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R GS     T            I I  + R     R ++    + R    ++  +    
Sbjct: 60  IRKGSNRGSVTLYL---SNEKDKIEIIRDIRSTTEDRLIRNQFPIARSATVVSNEIEKIL 116

Query: 125 LVPSMDRI 132
            +     +
Sbjct: 117 GIDKDIAL 124



 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 75/212 (35%), Gaps = 24/212 (11%)

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA------RVEMINALSSLI 212
           +  +   ++ +               S+E  + E+  +I         R ++INA++   
Sbjct: 644 LDAYNLSLKEKEN---RKSRIEGELESLEKDIEEISNRIANYELQLKDREKIINAINK-- 698

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM----SRRTLIGP 268
           +E ++         S       +  ++                +M+ M      R+  G 
Sbjct: 699 LEKIRSALGERKLQSYIIMTTKQLIENNLNDIISKFDLSIKNVEMEIMPKTGRGRSSSG- 757

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
               L+       + I   S GE+  + + + LA A+ + + T      +LDE + HLD+
Sbjct: 758 --DILVYTNSGDTLPIVSLSGGERIALSIALRLAIAKALMSNTN---FFILDEPTIHLDD 812

Query: 329 DKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357
            ++  L  I+        QI +   D+ V  +
Sbjct: 813 QRKAYLIEIIRAAKESVPQIIVVTHDEEVVQA 844


>gi|134110720|ref|XP_775824.1| hypothetical protein CNBD2340 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258490|gb|EAL21177.1| hypothetical protein CNBD2340 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1156

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 14/124 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK +++ +F  +  L + F  +    VG NG GK+ +L AI+    G+     R     D
Sbjct: 99  IKSISLIDFMCHRHLTVDFGPRMNFVVGHNGSGKSAVLTAIAVALGGKANLTGRGTGLKD 158

Query: 64  VTRIGSPSFFSTFARVEGMEG-----------LADISIKLETRDDRSVRCLQINDVVIRV 112
           + R G+     T       +            + + +I          +  +    +   
Sbjct: 159 LIRTGAERAVITITLANSGDSAYRPEVYNPNIVIERTIHSNGSSGYKFKASKDGKTIANK 218

Query: 113 VDEL 116
             EL
Sbjct: 219 RSEL 222


>gi|289192395|ref|YP_003458336.1| chromosome segregation protein SMC [Methanocaldococcus sp.
           FS406-22]
 gi|288938845|gb|ADC69600.1| chromosome segregation protein SMC [Methanocaldococcus sp.
           FS406-22]
          Length = 1169

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 24/163 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63
           ++ + +  F+++  L L      T  VG NG GK+NI++AI F+   +  +  R   ++ 
Sbjct: 4   LEKIELKNFKSFKKLSLDIPKGFTAIVGPNGSGKSNIVDAILFVLGKTSAKKLRANRFSG 63

Query: 64  VTRI----------------GSPSFFSTFARVEGMEGLADISIK-----LETRDDRSVRC 102
           +                      + F+  A   G+      S +     +   + +  R 
Sbjct: 64  LITYHNGKRADFAEVCLYFSNENNAFNVNADRVGILRRIKSSGETDYYLIWEENGKEKRK 123

Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
                 VI +   L            + +I +   +ERR+ +D
Sbjct: 124 KMAKHEVIDLFRRLGLLGDNVISQGDLLKIINISPIERRKIID 166


>gi|291522184|emb|CBK80477.1| condensin subunit Smc [Coprococcus catus GD/7]
          Length = 1188

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 98/287 (34%), Gaps = 36/287 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  R + 
Sbjct: 1   MFLKSIEVQGFKSFANKMVFEFHKGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+ S     F      ++  +    +     T   R  R      +IN    R
Sbjct: 61  MEDVIFSGTESRKPLGFAYVAITLDNSDHQLAVEYDTVTVSRRVYRSGESEYKINGHNCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +   ++RR    E
Sbjct: 121 LKDVQELFFDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVK--YKRRKALTE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSL-----IM 213
           + +    + L+           +E Q+  L       +I +   + +    +        
Sbjct: 179 KNLAEEQQNLSRVR---DILYELEKQVGPLEKQSETARIYLKHRDTLKQYDANMYLLSFY 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           +  +       K+ +         ++F  +K  YA+      + D  
Sbjct: 236 QLKKDSAAIDEKMDIVSTQLKDAQENFEKIKSAYAQMEALMEQYDQK 282


>gi|123439544|ref|XP_001310542.1| SMC family, C-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121892316|gb|EAX97612.1| SMC family, C-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1118

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASY 61
           +KI+ L +  F++Y  +  +         +G N  GK+N  +AI F+  +P    R    
Sbjct: 1   MKIEKLRLENFKSYQGVHEIGPFDDFVAVIGSNASGKSNCFDAICFVLAAPASSMRCKEL 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           +++      +   T A VE      +  I  + +   S     +N   +    +    L 
Sbjct: 61  SELICNADDT--ITSASVEMTVRKLNDLIVFKRKVTNSSSTYYVNGSKV-SASDYKDSLN 117

Query: 122 ISWL 125
               
Sbjct: 118 EVGF 121


>gi|302386300|ref|YP_003822122.1| chromosome segregation protein SMC [Clostridium saccharolyticum
           WM1]
 gi|302196928|gb|ADL04499.1| chromosome segregation protein SMC [Clostridium saccharolyticum
           WM1]
          Length = 1186

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 101/275 (36%), Gaps = 28/275 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60
           + +K + I  F+++A+ +   F    T  VG NG GK+N+ +A+ ++      +  R ++
Sbjct: 1   MYLKSIEIQGFKSFANKIVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQKVKQLRSSN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+       F      ++  +    I     T   R  R       IN    R
Sbjct: 61  MQDVIFSGTELRKPQGFAYVAITLDNSDHHLAIDYDQVTVSRRVYRSGESEYMINGSACR 120

Query: 112 VVDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D           K          +D+I SG   ERR   D     +  + RR++I  +
Sbjct: 121 LKDIYELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFK-RRKLIAQK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           +L   +  L+          + +E Q+  L  + + A  E +  L   +  Y   +    
Sbjct: 180 KLEAEKQNLIRVN----DILTELEKQVGPLARQ-SEAAKEYL-RLKEELKRYDVNQFLLE 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
            +       +    ++  +   E A++  +G + +
Sbjct: 234 TQGIQIQMKENLEKETIVSHDLEDARQASEGIRKE 268



 Score = 36.0 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 95/303 (31%), Gaps = 36/303 (11%)

Query: 58   RASYADVTRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                  +         +  +R+ E M+   ++   +  +  +     +    + +  +EL
Sbjct: 854  TNGSNSIIEEKQKEIEALKSRIQEEMKRSEELEGIISEKSSQKEASSREQKALFQKREEL 913

Query: 117  NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
                RIS L   + R+      ++ +  + M   ++       + +      RN   T  
Sbjct: 914  TG--RISLLDKELFRL----QSQKEKLEEWMESHVNYMWNEYELTYSTAEELRNEEWTSL 967

Query: 177  YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG-- 234
                    S++ ++ +LG     A  +             Q ++    + +L   +D   
Sbjct: 968  PEIKRMIQSLKEEIRKLGNVNVNAIEDYKEVSERYGFMKTQHDDLVSAEATLLKIIDELD 1027

Query: 235  -----KFDQSFCALKEEYAK-----------KLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                 +F++ F  ++ E+ K            L      D +     I            
Sbjct: 1028 IGMRKQFEEKFREIRLEFDKVFKELFGGGRGALELVEDEDILEAGIQIISQ------PPG 1081

Query: 279  DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
             K   +   S GE+ +  + +  A           +P  LLDEI A LD+   +   + +
Sbjct: 1082 KKLQNMMQLSGGEKALTAIALLFA-----IQNLKPSPFCLLDEIEAALDDSNVDRFAKYL 1136

Query: 339  TDI 341
              +
Sbjct: 1137 HKL 1139


>gi|327354171|gb|EGE83028.1| Spr18 protein [Ajellomyces dermatitidis ATCC 18188]
          Length = 1301

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 78/264 (29%), Gaps = 23/264 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I  + +++F  Y S       +  + +G NG GK+ ++ AI   L  G     R    A+
Sbjct: 196 IVRVKLTDFVTYTSAEFFPGPRLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPAE 255

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKHLR 121
             + G           +G+    +  I+       +     IN          EL K   
Sbjct: 256 FVKHGCEEAIIEIELAKGINHRENPVIRRTIVRKGNKSTFAINGKPSSKASVLELAKSFS 315

Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           I        +P                      A  P       +  + +R   + L   
Sbjct: 316 IQIDNLCQFLPQDKVAEFAALSPIELLHSTQRAAAGPEMLE-WHENLKTLRAEQKKLQAA 374

Query: 177 YF-DSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
              +    +++E   +M    V+  + R      +   I    +    P  + ++  F +
Sbjct: 375 NAGEREQLANLESRQEMQREDVERLLQR----ARIQKKIALLERSRPVPRYQEAVQSFRE 430

Query: 234 GK-----FDQSFCALKEEYAKKLF 252
            +       Q    L+ + A  L 
Sbjct: 431 AQHKRRNLQQEHGDLENQLAPALK 454


>gi|261417074|ref|YP_003250757.1| SMC domain protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261373530|gb|ACX76275.1| SMC domain protein [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302326883|gb|ADL26084.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 427

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 12/124 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAI-----SFLSPGRGFRR 58
           +++K L I  FR   +L L F  ++  +F G NG GKT +L A+      +++  +  + 
Sbjct: 1   MRVKKLRIENFRGIKNLDLDFSNSKMVVFAGINGAGKTTVLVAMQFLFSWYVARLKSPKG 60

Query: 59  A--SYADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
              S +D     G P  F     VE + G  D  ++      R+    + N        E
Sbjct: 61  KGLSLSDCDITNGEPYAFIEIEVVEKI-GEQDQVVRWSLFKKRT--SYRKNIERQASRAE 117

Query: 116 LNKH 119
           LN +
Sbjct: 118 LNNY 121


>gi|229825032|ref|ZP_04451101.1| hypothetical protein GCWU000182_00382 [Abiotrophia defectiva ATCC
           49176]
 gi|229790779|gb|EEP26893.1| hypothetical protein GCWU000182_00382 [Abiotrophia defectiva ATCC
           49176]
          Length = 1186

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 109/322 (33%), Gaps = 46/322 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++A+ +   F+   T  VG NG GK+N+ +A+   L     +  R + 
Sbjct: 1   MYLKSVEIQGFKSFANKIVFSFEGGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGSK 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G     + SF      ++  + +  I  +  T   R  R       IN    R
Sbjct: 61  MEDVIFSGTEIRKAQSFAYVAITIDNSDKVLPIDYEEVTVARRVYRSGESEYLINGHNCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +++I SG   +RR   D          ++R  +  
Sbjct: 121 LKDVGELFLDTGIGKEGYSIIGQGQIEKIISGRPEDRRELFDEAAGITK--FKKRKAESI 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM----INALSSLIM 213
           + +   +  L+         S +E Q+      AE        R E+    I    +   
Sbjct: 179 KNLEEESANLSRVN---DIMSELERQIGPLSKQAEAAKLYLNYRDELKKYEIINFINEYD 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
              +         +L      + D  +  +KEEY K   +    +          H  ++
Sbjct: 236 HIAETRAKAETDKNLAENNLKEADARYEDIKEEYEK--LENVLNEKAE-------HIDEV 286

Query: 274 IVDYCDKAITIAHGSTGEQKVV 295
                DK +       GE K++
Sbjct: 287 TKLISDKQVAREKA-EGELKLI 307


>gi|297619488|ref|YP_003707593.1| chromosome segregation protein SMC [Methanococcus voltae A3]
 gi|297378465|gb|ADI36620.1| chromosome segregation protein SMC [Methanococcus voltae A3]
          Length = 1199

 Score = 63.0 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63
           I  +++  F+++ + +L      T  +G NG GK+N ++ I F+   +  +  R   +  
Sbjct: 4   ISEIHLKNFKSFKNTKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +         + +A V       +  I +++      R +++N 
Sbjct: 64  LITYH-NGKRADYAEVTLFFDNNNREIPIDSDKVGICRKVKLNG 106


>gi|226322325|ref|ZP_03797843.1| hypothetical protein COPCOM_00086 [Coprococcus comes ATCC 27758]
 gi|225209247|gb|EEG91601.1| hypothetical protein COPCOM_00086 [Coprococcus comes ATCC 27758]
          Length = 476

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 98/280 (35%), Gaps = 43/280 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60
           + +K + +  F+++A+ +   F    T  VG NG GK+N+ +A+ ++      +  R  +
Sbjct: 1   MYLKSIEVQGFKSFANKIVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQKVKQLRGGT 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    +  +      +  R       IN  V R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNSDHKLPVEFEEVKVTRKLYRSGESEYLINGSVCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+ +    
Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKALS-LR 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM-----------IN 206
           +L   ++ L+            +E Q       +E   +    R E+           + 
Sbjct: 180 KLEEEQSNLVRVN----DILGELEKQFGPLQKQSETAKEYLKKREELKHYDINMFLVEMK 235

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
            L   I E  +K      +L+  G         +  +++E
Sbjct: 236 RLKGQIRENDEKLKIAQNELTEAGKKHEDMKAQYEKIEQE 275


>gi|148557587|ref|YP_001265169.1| chromosome segregation protein SMC [Sphingomonas wittichii RW1]
 gi|148502777|gb|ABQ71031.1| chromosome segregation protein SMC [Sphingomonas wittichii RW1]
          Length = 1140

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 84/234 (35%), Gaps = 37/234 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++ + L +S F+++     L+ +   T  VG NG GK+N+LEAI ++   S  +  R   
Sbjct: 1   MRFRKLRLSGFKSFVEPAELIIERGLTGIVGPNGCGKSNLLEAIRWVMGESSAKSMRGGG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLA--DISIKLETRDDRS-VRCLQINDVVIRV 112
             DV   G     +  F       E  E  A  D  +++  R +R      ++N   +R 
Sbjct: 61  MEDVIFAGTTTRPARDFAEVTLFTERPEAEADEDREVEVTRRIERGAGSAYRMNGRDVRQ 120

Query: 113 VDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDRMVF----AIDPR------ 154
            D   L          P++        + +    ERR+ L+         +  +      
Sbjct: 121 KDVGLLFADAATGAHSPALVSQGRIAAVIAAKPAERRQMLEEAAGIAGLHVRRKDAEQKL 180

Query: 155 -----HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ--MAELGVKINIAR 201
                +  R+ D    M  R   L      +    ++  Q  +AE  +  +  R
Sbjct: 181 RATETNLARLDDLIADMENRTASLRRQARAAERYKALSEQIRLAEARLIYSRWR 234


>gi|117620939|ref|YP_856566.1| RecF/RecN/SMC family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562346|gb|ABK39294.1| RecF/RecN/SMC family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 556

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 77/411 (18%), Positives = 162/411 (39%), Gaps = 61/411 (14%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSP--------G 53
           NR  +  +N+  FR + S+++  ++  T+F+G NG+GKT I++AIS  LS         G
Sbjct: 68  NRFVLSEINLVNFRRFDSIKVRLESNVTVFIGGNGIGKTTIIDAISKVLSWIVSGIEKEG 127

Query: 54  RGFRRASYADVTRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           +      Y ++       F    A  E G++   + +I          R    N V ++ 
Sbjct: 128 KNGSPIKYQEINNNEQCYFSDVNALFEFGIKTKVNGTISRSKLGTAEKRDS--NVVELKS 185

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           +  + + +    + P    IF             + ++I   H  +  +   +++  + L
Sbjct: 186 IANVWRVINS--INPINLPIF-------------LCYSIARSHPAKRSN-RPIVKEPS-L 228

Query: 173 LTEGYFDSSWCSSIE---------AQMAEL----------GVKINIARVEMINALSSLIM 213
           L +  FD ++  +++             EL           + +  A+V  +  LSS+  
Sbjct: 229 LRKSRFD-AYSGALDGAGKIDDFIEWFIELHKKTSNNGFFDIDLLEAQVRKLKILSSMDA 287

Query: 214 EYVQKENFPHIKLSLT--GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           ++++  +   I LSL      DG+F+ +   ++      +     ++++   T  G    
Sbjct: 288 DFIEMYDQKIIDLSLAKNNMQDGEFENNLKQMRTVVDAVVKVVPSIENIWVETSSG--SD 345

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL-----ISNTTGFAPILLLDEISAHL 326
           ++ V      +  +  S G++ ++ +   LA   +     ISN      I+L+DEI  HL
Sbjct: 346 EVKVRNDGGIVNFSQLSDGQRVLLSLVADLARRLVMLNPNISNPLEGQGIVLIDEIELHL 405

Query: 327 DEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETA-KFMRISNHQALC 374
               +  +   + D     Q  +T     +  ++++   +   I  H AL 
Sbjct: 406 HPAWQQGIVLALKDAFPNIQFILTTHSPQILSTIDKKCIRQFYIDEHGALQ 456


>gi|261402663|ref|YP_003246887.1| chromosome segregation protein SMC [Methanocaldococcus vulcanius
           M7]
 gi|261369656|gb|ACX72405.1| chromosome segregation protein SMC [Methanocaldococcus vulcanius
           M7]
          Length = 1172

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 27/166 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63
           ++ + +  F+++  L L      T  VG NG GK+NI++AI F+   +  +  R   ++ 
Sbjct: 4   LEKIELKNFKSFKKLSLDIPKGFTAIVGPNGSGKSNIVDAILFVLGKTSAKKLRANKFSG 63

Query: 64  VTRI----------------GSPSFFSTFARVEGMEGLADISIK--------LETRDDRS 99
           +                        F TF       G+     K        +   +D+ 
Sbjct: 64  LITYHNGKRADFAEVCIYFLNENDTFKTFNINADRVGILRRIKKSGESNYYLIWKDNDKE 123

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            R       +I +  +L            + RI +   +ERR+ +D
Sbjct: 124 KRRKMSKQEIIDLFRKLGLLGNNVISQGDLLRIINVSPIERRKIID 169


>gi|116873239|ref|YP_850020.1| chromosome segregation SMC protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742117|emb|CAK21241.1| chromosome segregation SMC protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 1186

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 88/272 (32%), Gaps = 49/272 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLVLENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR   +             ++ ++
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--Q 217
              +     L E   +          +E Q+  L              + + I +    Q
Sbjct: 172 HRKKQAENKLFETEENLNRVQDILYELEGQLEPL-------------EMQASIAKDYLFQ 218

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +E     +++L              +++E+ +
Sbjct: 219 QEELEKYEVTLLASEISSLTTKLAEVRQEFGE 250


>gi|77465761|ref|YP_355264.1| hypothetical protein RSP_3757 [Rhodobacter sphaeroides 2.4.1]
 gi|77390179|gb|ABA81363.1| Conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 532

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 120/371 (32%), Gaps = 51/371 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+   I  +R      + F+ +  + VG+N  GK+ +LEAI     G+     +   +
Sbjct: 1   MFIQRAVIRNYRCLKQANVTFNDKLNVIVGNNECGKSTLLEAIHLALTGQ----LNGRPL 56

Query: 65  TRIGSPSFFSTFARVEGMEGLA--------DISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                P  F+    +E +E L          I I++   DD ++  L+ N+  + +  +L
Sbjct: 57  QIELHPHLFNLDLVLEYIEALKAGRAPAPPSILIEVYLADDPALTKLKGNNNTLGL--DL 114

Query: 117 NKHLRISWLVP---SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
                +  L P        +     E R       +               ++  R   L
Sbjct: 115 PGVALLIDLNPAYAEDFAQYVSDPSEIRTIPMEYYWIKWRDFAE-----NDILNSRVIPL 169

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARV---EMINALSSLIMEYVQKENFPHIKLSLTG 230
                D+S   +  A  +   + I    +   E ++   +  +   +    P +K     
Sbjct: 170 HASLIDASTIKN-NAAASRYVIDIVKESLTSKEKVDLALTYRLMKDRFLEEPKVKAINDA 228

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
               K   S   +            +   M       PH  D+ +    K         G
Sbjct: 229 LAAKKGKISDKVISVSLDTSARANWEAGIM-------PHLDDIPLPLVGK---------G 272

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMT 348
           EQ  V +   LA       T+  + I+L++E   HL     N L   +       QIF+T
Sbjct: 273 EQNSVKI--KLA-----METSAKSHIILIEEAENHLSYASLNELIGHIAANAGSRQIFIT 325

Query: 349 GTDKSVFDSLN 359
                V + L 
Sbjct: 326 THSSFVLNKLG 336


>gi|167756879|ref|ZP_02429006.1| hypothetical protein CLORAM_02428 [Clostridium ramosum DSM 1402]
 gi|167703054|gb|EDS17633.1| hypothetical protein CLORAM_02428 [Clostridium ramosum DSM 1402]
          Length = 981

 Score = 63.0 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 114/335 (34%), Gaps = 59/335 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A  + + F    T  VG NG GK+NI +A+   L     +  R A+
Sbjct: 1   MYLKRIELHGFKSFADKVNVEFQPGITGIVGPNGCGKSNISDAVRWVLGEQSVKSLRGAN 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ---------INDVVI 110
            +DV   GS        A V  +   +D  +K +  +    R L          IN    
Sbjct: 61  MSDVIFAGSEDRRAQNLAEVTLVFDNSDRFMKYDYNEVEITRRLYRMNNEAEYLINKQSC 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRM 159
           R + ++   +  + L      I S             ERR   +    V     R    +
Sbjct: 121 R-LKDIIDLIMDTGLGKDSLSIISQGNISSFADNKPEERRGIFEDAAGVSKYKKRKLESI 179

Query: 160 IDFERL-------------MRGRNRLLTEGYFDSSWCSSIEAQMAE-----LGVKINIAR 201
              ER              +  +   L      +    +++ ++       L  +I  A 
Sbjct: 180 RKLERTNENLERIGDIVVELEKQVGPLKRQKDKAEKYLALKEKLTAIEVNVLINEITEA- 238

Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-------FDQSFCALKEEYAKKLFD- 253
            + ++ LS +I +  +++      + L    + +        DQ   AL+ +  + + + 
Sbjct: 239 KKSLDELSKVIKDLNERQASLEADILLKESSNDEIKKKMFTLDQEINALQSKLLEAVSNV 298

Query: 254 ------GRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
                   ++D   +  L    + +L  +  +   
Sbjct: 299 SKLETAKVEVDQKRKHALETLSKENLKENIANMKA 333


>gi|332977618|gb|EGK14386.1| SMC domain protein [Psychrobacter sp. 1501(2011)]
          Length = 1301

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 79/215 (36%), Gaps = 36/215 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K L ++ F+++A+     F    T  VG NG GK+N+++AI ++   S  +  R  +
Sbjct: 1   MRLKSLKLAGFKSFANPTTFTFRHGITAIVGPNGCGKSNVIDAIRWVLGESSAKQLRGGA 60

Query: 61  YADVTRIGSPS-FFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105
            +DV   G+ +    + A VE       +    I  +L    + SVR            I
Sbjct: 61  MSDVIFAGTQNKAAKSVASVELTFEHTQDEQTGIRHELNLYHELSVRRQINVEGKSDYFI 120

Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
           N    R  D         L            + RI      + R F++            
Sbjct: 121 NGTRCRRRDVVDVFLGTGLGPRSYSVIQQGMIGRIVDSSPQQLREFIEEAAG-------- 172

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
            +  ++       + L +   +    + IEA+++ 
Sbjct: 173 -VSRYQARREETQKKLLKTRENLERLNDIEAELSR 206


>gi|326791865|ref|YP_004309686.1| hypothetical protein Clole_2789 [Clostridium lentocellum DSM 5427]
 gi|326542629|gb|ADZ84488.1| hypothetical protein Clole_2789 [Clostridium lentocellum DSM 5427]
          Length = 540

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 38/126 (30%), Gaps = 8/126 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK L I  +     L     A   +  G    GKT+ILEAI              ++V
Sbjct: 1   MKIKRLAIKNYVGVKELEWSPKAGVNVLKGVKASGKTSILEAIETAFTNL----KRRSEV 56

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G           EG+E    I  +             IN        EL K +    
Sbjct: 57  VRHGEDEATLYVETDEGLEIDRRIRTEKSDYMKLRQEGKAINSTE----SELRKLISGDI 112

Query: 125 LVPSMD 130
             P   
Sbjct: 113 FRPLDF 118


>gi|307704937|ref|ZP_07641828.1| chromosome segregation protein SMC [Streptococcus mitis SK597]
 gi|307621551|gb|EFO00597.1| chromosome segregation protein SMC [Streptococcus mitis SK597]
          Length = 1179

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 109/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             + +    +L+    L   + Q    L++E  + L   R+
Sbjct: 238 KVELDSTEEELAQVQELLTSYYQKREKLEKE-NQTLKKQRQ 277


>gi|254556513|ref|YP_003062930.1| DNA repair protein RecN [Lactobacillus plantarum JDM1]
 gi|254045440|gb|ACT62233.1| DNA repair protein RecN [Lactobacillus plantarum JDM1]
          Length = 564

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 69/407 (16%), Positives = 134/407 (32%), Gaps = 61/407 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I+ F     L + F+A  T+  G+ G GK+ I++A+  L+ GRG      A+  R
Sbjct: 2   LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SAEFIR 56

Query: 67  IGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIR-- 111
            G+                +     E     AD ++ L+    +S R   +IN +++   
Sbjct: 57  TGADKAVLQGMFILPADGVTAQLLDEAGIEHADNTVILQREITKSGRNTCRINGMLVNTT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-------RRRMIDFER 164
            + ++ + +           +      +    LD    A   +          R     R
Sbjct: 117 TLKQIGETIVDIHGQNEHQELMQ--PEKHLGLLDEFATAKIRKLKQRYQQQYDRYQQLNR 174

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +R +N    E          +  Q+ E+         E         ++  Q  N   +
Sbjct: 175 ELRQKNANEKEWAQR---LDMLNFQVDEIAAAQVKVGEEASLTAERDRLDNYQMINQA-L 230

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-----HRSDLIVDYCD 279
           + S T    G+       +       L     +D       +          D      +
Sbjct: 231 QQSYTLLAAGEETTGAVDMVGTAMNALEPIANLDPAFNEITVNVKNAFYGLQDAAGQISN 290

Query: 280 KAITIAHGSTG-----EQKVVLVGIFLAHARLISNTTGFAPILLLD---EISAHL----- 326
           +         G     EQ++ ++         +    G +   +LD   +I+A L     
Sbjct: 291 QLDLQEFD-EGRLDEIEQRLDVLA-------QLKRKYGDSEQQILDYYQKIAAELSKMTD 342

Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
            E+    L + V D+  Q+  TG  +++ D     AK ++   HQ L
Sbjct: 343 SEENSEDLAQRVADLKQQLLTTG--EALSDKRRAAAKVLQRQIHQEL 387


>gi|50289173|ref|XP_447016.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526325|emb|CAG59949.1| unnamed protein product [Candida glabrata]
          Length = 1110

 Score = 62.6 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK L +  F  + +  +         VG NG GK+ IL AI+     +     R +S  D
Sbjct: 80  IKKLTLHNFMCHRNFDVELGPGLNFIVGKNGSGKSAILTAITIGLGAKASETNRGSSLKD 139

Query: 64  VTRIGSPS 71
           +   G  S
Sbjct: 140 LITAGCNS 147


>gi|28378306|ref|NP_785198.1| DNA repair protein RecN [Lactobacillus plantarum WCFS1]
 gi|28271141|emb|CAD64046.1| DNA repair protein RecN [Lactobacillus plantarum WCFS1]
          Length = 564

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 69/407 (16%), Positives = 134/407 (32%), Gaps = 61/407 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I+ F     L + F+A  T+  G+ G GK+ I++A+  L+ GRG      A+  R
Sbjct: 2   LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SAEFIR 56

Query: 67  IGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIR-- 111
            G+                +     E     AD ++ L+    +S R   +IN +++   
Sbjct: 57  TGADKAVLQGMFILPADGVTAQLLDEAGIEHADNTVILQREITKSGRNTCRINGMLVNTT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-------RRRMIDFER 164
            + ++ + +           +      +    LD    A   +          R     R
Sbjct: 117 TLKQIGETIVDIHGQNEHQELMQ--PEKHLGLLDEFATAKIRKLKQRYQQQYDRYQQLNR 174

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +R +N    E          +  Q+ E+         E         ++  Q  N   +
Sbjct: 175 ELRQKNANEKEWAQR---LDMLNFQVDEIAAAQVKVGEEASLTAERDRLDNYQMINQA-L 230

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-----HRSDLIVDYCD 279
           + S T    G+       +       L     +D       +          D      +
Sbjct: 231 QQSYTLLAAGEETTGAVDMVGTAMNALEPIANLDPAFNEITVNVKNAFYGLQDAAGQISN 290

Query: 280 KAITIAHGSTG-----EQKVVLVGIFLAHARLISNTTGFAPILLLD---EISAHL----- 326
           +         G     EQ++ ++         +    G +   +LD   +I+A L     
Sbjct: 291 QLDLQEFD-EGRLDEIEQRLDVLA-------QLKRKYGDSEQQILDYYQKIAAELAKMTD 342

Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
            E+    L + V D+  Q+  TG  +++ D     AK ++   HQ L
Sbjct: 343 SEENSEDLAQRVADLKQQLLTTG--EALSDKRRAAAKVLQRQIHQEL 387


>gi|266623887|ref|ZP_06116822.1| putative cell division protein Smc [Clostridium hathewayi DSM
           13479]
 gi|288864300|gb|EFC96598.1| putative cell division protein Smc [Clostridium hathewayi DSM
           13479]
          Length = 1193

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60
           + +K + I  F+++A+ +   F    T  VG NG GK+N+ +A+ ++      +  R +S
Sbjct: 8   MYLKSIEIQGFKSFANKIVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQKVKQLRSSS 67

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+       F S    ++  +    I     T   R  R       IN    R
Sbjct: 68  MQDVIFSGTETRKPQGFASVAITLDNSDHQLAIDYDQVTVTRRVYRSGESEYMINGSTCR 127

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+ +   +
Sbjct: 128 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKAIAQ-K 186

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
           +L   +  L+      +   S +E Q+  L  + + A  E +  L   + +Y
Sbjct: 187 KLEDEKQNLVRV----TDILSELEKQVGPLAKQ-SEAAKEYL-RLKEDLKKY 232


>gi|237734589|ref|ZP_04565070.1| chromosome segregation ATPase [Mollicutes bacterium D7]
 gi|229382409|gb|EEO32500.1| chromosome segregation ATPase [Coprobacillus sp. D7]
          Length = 981

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 114/335 (34%), Gaps = 59/335 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A  + + F    T  VG NG GK+NI +A+   L     +  R A+
Sbjct: 1   MYLKRIELHGFKSFADKVNVEFQPGITGIVGPNGCGKSNISDAVRWVLGEQSVKSLRGAN 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ---------INDVVI 110
            +DV   GS        A V  +   +D  +K +  +    R L          IN    
Sbjct: 61  MSDVIFAGSEDRRAQNLAEVTLVFDNSDRFMKYDYNEVEITRRLYRMNNEAEYLINKQSC 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRM 159
           R + ++   +  + L      I S             ERR   +    V     R    +
Sbjct: 121 R-LKDIIDLIMDTGLGKDSLSIISQGNISSFADNKPEERRGIFEDAAGVSKYKKRKLESI 179

Query: 160 IDFERL-------------MRGRNRLLTEGYFDSSWCSSIEAQMAE-----LGVKINIAR 201
              ER              +  +   L      +    +++ ++       L  +I  A 
Sbjct: 180 RKLERTNENLERIGDIVVELEKQVGPLKRQKDKAEKYLALKEKLTAIEVNVLINEITEA- 238

Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-------FDQSFCALKEEYAKKLFD- 253
            + ++ LS +I +  +++      + L    + +        DQ   AL+ +  + + + 
Sbjct: 239 KKSLDELSKVIKDLNERQASLEADILLKESSNDEIKKKMFTLDQEINALQSKLLEAVSNV 298

Query: 254 ------GRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
                   ++D   +  L    + +L  +  +   
Sbjct: 299 SKLETAKVEVDQKRKHALETLSKENLKENIANMKA 333


>gi|18978215|ref|NP_579572.1| chromosome segregation protein smc [Pyrococcus furiosus DSM 3638]
 gi|18894028|gb|AAL81967.1| chromosome segregation protein smc [Pyrococcus furiosus DSM 3638]
          Length = 1291

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 33/253 (13%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
           I+ L +  F++Y    + + F    T  VG NG GK+NI +AI F+  G      R +  
Sbjct: 118 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 177

Query: 62  ADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-------VIRVV 113
           +D+   GS     + +A V       D    ++  +    R +  +              
Sbjct: 178 SDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATR 237

Query: 114 DELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
            E+   L  + + P    I              +ERR  +D +    +          E+
Sbjct: 238 SEILDILTAAMISPDGYNIVLQGDITKFIKMSPLERRLLIDDISGIAEYD-----SKKEK 292

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQKENFP 222
            +      L +   + +    +  ++ +   K+   R + +    L   + +        
Sbjct: 293 ALEE----LKQAEENLARVDLLIKEVKKQLDKLEKERNDALRYLDLKDKLEKAKVSLLLG 348

Query: 223 HIKLSLTGFLDGK 235
            IK+  T   +G+
Sbjct: 349 EIKILETQIKEGE 361



 Score = 36.8 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 272  DLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
            ++      K +      S GE+ +  +    A           AP  L DEI AHLD+  
Sbjct: 1167 EIEAKPAGKDVKRIEAMSGGEKALTALAFVFA-----IQKFKPAPFYLFDEIDAHLDDAN 1221

Query: 331  RNALFRIVTD--IGSQIFM 347
               +  ++ +    SQ  +
Sbjct: 1222 VKRVADLIKESSKESQFIV 1240


>gi|323702684|ref|ZP_08114345.1| chromosome segregation protein SMC [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532347|gb|EGB22225.1| chromosome segregation protein SMC [Desulfotomaculum nigrificans
           DSM 574]
          Length = 1187

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 85/236 (36%), Gaps = 36/236 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L+I  F+++A  ++L  +   T+ VG NG GK+NI +AIS+          R + 
Sbjct: 1   MCLKRLDIQGFKSFADRIKLELNPGLTVVVGPNGSGKSNISDAISWCLGEQRASSLRGSR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS              ++    L  +    I +  R  RS      IN V  R
Sbjct: 61  MEDVIFAGSDKRKPVGMAEVTLTLDNANKLFPLPYEEISVSRRLYRSGESEYLINKVPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          +D I S    ERR  ++             ++ + 
Sbjct: 121 LKDIQALFMDTGLGRGAYSLIGQGKVDEILSSRPEERRSVIEE---------AAGIVKYR 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAE----LGVKINIARVEMINALSSLIMEY 215
                  R LT    D +  S I  ++A+    L ++   AR    N L   +   
Sbjct: 172 HRKEEAERKLTAAQQDLNRISDIIHELADRIEPLSLQAEKARQ--FNRLQKELHHI 225


>gi|86608260|ref|YP_477022.1| DNA repair protein RecN [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556802|gb|ABD01759.1| DNA repair protein RecN [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 568

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 7/148 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI--SFLSPGRGFRRASYADV 64
           ++ L I  F     L + F A   +  G+ G GK+ IL+A+  +     R  R  S   +
Sbjct: 2   LRLLRIENFALIEQLEIPFRAGLNVLTGETGAGKSIILDALDAALGGTARALRTGSERGL 61

Query: 65  TR-----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
                        +     ++ +E     S +L  R+ +    L++N V++     LN  
Sbjct: 62  VEAIFSPNPELQAWLEQEHIDPLEEGLVCSRELVLRNGKLTSRLRVNGVLVNKAQMLNLR 121

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRM 147
            ++  +      +       +RR+LD  
Sbjct: 122 AKLVEITAQGQTVQIQSPQTQRRWLDDF 149


>gi|270292631|ref|ZP_06198842.1| conserved hypothetical protein [Streptococcus sp. M143]
 gi|270278610|gb|EFA24456.1| conserved hypothetical protein [Streptococcus sp. M143]
          Length = 1179

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 105/283 (37%), Gaps = 37/283 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A    +VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTRVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   IK+E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNEDGFIKDAGQVIKVERHIYRSGDSEYRIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR----------VEMINALSSLIM 213
             ++     L            ++ Q+  L  +   AR             ++ L + I 
Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLAKQAENARKFLDLDGQRKAIYLDVLVAQIK 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           E   +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 236 ENKAELELTEEELTQVQELLTSYYQKREELEEE-NQTLKKKRQ 277


>gi|255513351|gb|EET89617.1| SMC domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 1133

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 89/272 (32%), Gaps = 30/272 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASY 61
           + +  + I  F+++    + F       +G NG GK+NI ++I F          R  + 
Sbjct: 2   LYVDKVIIHNFKSFRHSVIRFSRGFNCIIGPNGSGKSNIFDSILFGFGESSLKRIRAHAT 61

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKHL 120
            D+   G+ S          +    D  IK++     + +   ++ND      + L    
Sbjct: 62  TDLISRGASSKGKANYSYVTIFLGGDKEIKIKRVVFSNGKIKYKLNDRRSSRQEILETLH 121

Query: 121 RISWLVPSMDRIFSGL--------SMERRRFLDR--MVFAIDPRHRRRMIDFERL----- 165
                +   + I  G           ERR  +D    +   D +    + + E++     
Sbjct: 122 SYGCYINETNTIAQGEIARISELNHKERRGLIDIAAGIEEFDSKKVAALKELEKVEEKIN 181

Query: 166 -----MRGRNRLLTEGYFDSSWCS---SIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
                +  R   L E   +        ++ + + +L   I  AR    N + +   + V+
Sbjct: 182 GAKIQLHERQGFLNELKREKESAEKYIALNSLIKDLNYTILKARE---NDVENEYSKVVE 238

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
                  +L        K D+    L  E A 
Sbjct: 239 SLYLGKKQLDSLNAEKSKLDEELLELSREKAS 270


>gi|332535595|ref|ZP_08411363.1| type I restriction-modification system, specificity subunit S
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332034979|gb|EGI71500.1| type I restriction-modification system, specificity subunit S
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 877

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 137/383 (35%), Gaps = 36/383 (9%)

Query: 4   RIKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           ++KIK L +  +R + S ++ F D+  T+ +G+NGVGK++ILEA +    G         
Sbjct: 428 QLKIKNLTLKNYRAFESFKMNFSDSNVTVIIGNNGVGKSSILEATALSLSG-------LI 480

Query: 63  DVTR-IGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVD-ELNK 118
              R     +   + A +   E  A + +KL+             I    + +   E   
Sbjct: 481 AKIRTKNGKAANISQADIRNEEVSATLEVKLDDLRTSSPINYHWIIAGTRVGLQSNESGS 540

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           + ++++L  +     +  S      +  +++ +D   +   ++F      R         
Sbjct: 541 YTQLNYLAENFRNEITSSSEASLPLI--VLYGVDRVTKGVKMNFLESKTDRFEAYESPPH 598

Query: 179 DSSWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
            S+ C+ I          I   +   ++ + AL   + +    EN     + L  + +  
Sbjct: 599 KSASCNEIFDW-IHYRDNIQNEKNIGLQSLKALEQNLRDSGLDENSIRDSIELVKYREPV 657

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
                 A+ +   +    G + +   R          + +   D  + I   S GE+ + 
Sbjct: 658 LLAVKSAISKFIPEISEIGVEREPEVR----------IFLIKNDTKVYIDQLSQGEKGIF 707

Query: 296 LV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMT 348
            +       L+     + +      ++L+DE+  HL    +  +   +T      Q  +T
Sbjct: 708 CLVADISRRLSILNPHLKDPLKGGGVVLIDEVELHLHPAWQQKIIENLTTCFPNIQFILT 767

Query: 349 GTDKSVFDSL-NETAKFMRISNH 370
                V  ++ N+  +   + + 
Sbjct: 768 SHSPQVLTTVKNKDIRLFELEDG 790


>gi|225851132|ref|YP_002731366.1| putative DNA double-strand break repair protein Rad50
           [Persephonella marina EX-H1]
 gi|225645387|gb|ACO03573.1| putative DNA double-strand break repair protein Rad50
           [Persephonella marina EX-H1]
          Length = 893

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + +K + +  F  +    + F D   T+F+G+NG GK++I+E IS+   G+  +  +  D
Sbjct: 1   MILKRIYLKNFLTHTETEINFPDKGITVFIGENGAGKSSIIEGISYALYGKTSKG-NLQD 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
           + + G          ++G E    I   +  +  ++V
Sbjct: 60  IVQWGKNEAKVELDFIKGGE-TYRIERVVSIKGKKAV 95



 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 12/92 (13%)

Query: 290 GEQKVVL-VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-----S 343
           G Q+  L + + LA  R +S+      +L+LDE + HLD+ +R+ L  ++ ++       
Sbjct: 807 GGQRTALGIALRLAIGRFLSS---KNEVLILDEPTVHLDDQRRSELINLLLELKRKNFVR 863

Query: 344 QIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           Q+ +   D  V D+ +       + +     I
Sbjct: 864 QLIIVTHDTEVEDAADN---IYYVESGTVKSI 892


>gi|225076209|ref|ZP_03719408.1| hypothetical protein NEIFLAOT_01246 [Neisseria flavescens
          NRL30031/H210]
 gi|224952460|gb|EEG33669.1| hypothetical protein NEIFLAOT_01246 [Neisseria flavescens
          NRL30031/H210]
          Length = 105

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA----QHTIFVG-DNGVGKTNILEAISFL 50
          + IK + +  F++YA     F      ++ I VG +NG GKT +LEAI   
Sbjct: 1  MYIKRIKLKNFKSYAEAEFEFPPPEKGRNLILVGAENGHGKTTLLEAIYLC 51


>gi|306815655|ref|ZP_07449804.1| SMC domain-containing protein [Escherichia coli NC101]
 gi|305851317|gb|EFM51772.1| SMC domain-containing protein [Escherichia coli NC101]
          Length = 570

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 119/348 (34%), Gaps = 34/348 (9%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +++I  L +  FRN+    + F+   T+ +G N +GK+N+L            R      
Sbjct: 6   KLEISSLKLKGFRNFKDAFINFNYN-TLIIGSNDIGKSNML---------HSLRILLDKS 55

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +              +E      +I I +  +D      L I    +    E    ++ S
Sbjct: 56  L-SESEIEPDELDFHLENGTPCEEIEIIVHFKDINEDAVLSILKGNVSDSGE--SFIKYS 112

Query: 124 WLVPSMD-RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            +   +  ++F G S+E        +  I+ R+  + ++ + +   R  L      +   
Sbjct: 113 AIKSDLSYKLFIGSSLE-------SLQEINSRYYLKFVNLKYIQSQR-DLEKFIRKEKRQ 164

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              I  Q    G ++     +++  +SS +     K +    +L          +     
Sbjct: 165 LLKIAQQSLTPGERVED--DDLLREISSDLQVINDKIS----QLIYVERATKDVNDEIKK 218

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L   Y++       +   +    I      L +       ++  G  G    +L+ ++ A
Sbjct: 219 LAHHYSE-----YSVQLDTGVIGINEFIDSLQLGANSNGSSVMLGGDGRNNQILLALWKA 273

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIGSQIFMTG 349
            +    +        +++E  AHL   ++  L   + T++  Q  ++ 
Sbjct: 274 KSIREHDIDNEVIFYVIEEPEAHLHPHQQRKLADYLTTELPGQTIISS 321


>gi|21227133|ref|NP_633055.1| chromosome partition protein [Methanosarcina mazei Go1]
 gi|20905464|gb|AAM30727.1| Chromosome partition protein [Methanosarcina mazei Go1]
          Length = 1175

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 50/272 (18%), Positives = 97/272 (35%), Gaps = 45/272 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK +    F+++   +R+ F    T   G NG GK+NI++ I F   L+  R  R   
Sbjct: 1   MYIKEIEFVNFKSFGKKVRISFYNDFTTISGPNGSGKSNIIDGILFALGLTSSRTLRAEK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD---DRSVRCLQI--------NDVV 109
             D+   G  +    FA+V      AD  + LE  +    R VR  +         N   
Sbjct: 61  LTDLIYNGDEAKKPDFAQVTIRFDNADRKLPLELDEIEVSRKVRRTKNAYYSYFYFNGKA 120

Query: 110 IRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
           +  + E++  L  + + P          + +I S  S+ERR+ +D +    +        
Sbjct: 121 V-SLGEIHSQLAKAGVTPEGYNVVMQGDVTQIISMTSVERRKIIDEIAGVAEFD------ 173

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
                                    +  Q+  + + +   R + +  LS    + ++ ++
Sbjct: 174 -------------ERKQKALGELEIVRQQIERVDIILEEVRTQ-LEKLSGERDQALKYQS 219

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
               K+   G++     +      E   K+L 
Sbjct: 220 LKSEKVKFEGYVLLSKLKDARTELENVDKELA 251


>gi|117923322|ref|YP_863939.1| ATP binding protein [Magnetococcus sp. MC-1]
 gi|117607078|gb|ABK42533.1| ATP binding protein [Magnetococcus sp. MC-1]
          Length = 454

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/45 (44%), Positives = 27/45 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +K+  L +S FR + SL + FD   T+ V  NG GKT IL+AI  
Sbjct: 1  MKLNTLTLSNFRCFESLEITFDDYLTVLVAQNGGGKTAILDAIGV 45


>gi|159905659|ref|YP_001549321.1| chromosome segregation protein SMC [Methanococcus maripaludis C6]
 gi|159887152|gb|ABX02089.1| chromosome segregation protein SMC [Methanococcus maripaludis C6]
          Length = 1189

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63
           +  +++  F+++ + +L      T  +G NG GK+N ++ I F+   +  +  R   +  
Sbjct: 4   LSEIHMKNFKSFKNSKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +    +     +FA V       D  + +E+      R ++IN 
Sbjct: 64  LITYHNGKR-ESFAEVTLFFDNKDRKMPVESNKVGISRKVKING 106


>gi|119872396|ref|YP_930403.1| SMC domain-containing protein [Pyrobaculum islandicum DSM 4184]
 gi|119673804|gb|ABL88060.1| SMC domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 790

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 101/296 (34%), Gaps = 53/296 (17%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRAS 60
           +I+ + +  FR+Y     +      TI +G  G GKT++L AI +   G+      R A 
Sbjct: 3   RIEKIELENFRSYKGRHEVSLGD-VTILLGRIGAGKTSLLYAIEYALFGKQLEVRERVAK 61

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVD----- 114
             D+  + +         +E   G   + I+       S + + + N + +R  D     
Sbjct: 62  LVDLINVDAQEANVA---LELRRGNDKLRIERRLGRRGSEKLVVLYNGIKLRDRDAEERL 118

Query: 115 -ELNK-----HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLM 166
            EL       + R+ ++       F   + ++R      +F ID      R +   E+ +
Sbjct: 119 VELIGADEDIYERLVYISHRTLEGFIYGTAQKRTLSVDRLFGIDIIDNILRVVSSIEKYL 178

Query: 167 RGRNRLLT------EGYFDS-----------SWCSSIEAQMAEL----------GVKINI 199
             +   L       E Y D            +   +IE ++A L            ++  
Sbjct: 179 LEKAENLRKRLSTYEKYRDIIKKYGGYKGVVTRLETIEGELAALKEREVNLTKTVEELAK 238

Query: 200 ARVEMINAL--SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
            R   +  +  +  I+    K       L  T   D   D +   +++   + L +
Sbjct: 239 RRAGYLEKIRENENILLEYYKTRSELEILESTTGEDVGLD-AVEKIRDALQEALEE 293


>gi|25028528|ref|NP_738582.1| putative chromosome segregation SMC protein [Corynebacterium
           efficiens YS-314]
 gi|23493813|dbj|BAC18782.1| putative chromosome segregation SMC protein [Corynebacterium
           efficiens YS-314]
          Length = 1169

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 65/171 (38%), Gaps = 21/171 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L +  F+++AS   L F+      VG NG GK+N+++A++++      +  R   
Sbjct: 1   MYLKSLTLKGFKSFASATTLKFEPGICAVVGPNGSGKSNVVDALAWVMGEGSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I     +   R  R      +IN    R
Sbjct: 61  MEDVIFAGAGDRKPLGRAEVTLTIDNSDGALPIDYTEVSVTRRMFRDGASEYEINGARAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
           ++D         + + + I      +  I      ERR +++     +  R
Sbjct: 121 LMDIQELLSDSGIGREMHIMVGQGKLAEILESRPEERRAYIEEAAGVLKHR 171


>gi|15964255|ref|NP_384608.1| hypothetical protein SMc02153 [Sinorhizobium meliloti 1021]
 gi|15073431|emb|CAC41939.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 443

 Score = 62.6 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
          +++  L+++ FR +A   + F    T+ V +NG GKT +L+A
Sbjct: 4  LRLDKLSLTNFRCFAHCEIAFHPGLTVLVAENGSGKTAVLDA 45


>gi|313669116|ref|YP_004049400.1| hypothetical protein NLA_18410 [Neisseria lactamica ST-640]
 gi|313006578|emb|CBN88043.1| hypothetical protein NLA_18410 [Neisseria lactamica 020-06]
          Length = 683

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 13/125 (10%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHT----IFVGD-NGVGKTNILEAISFLSP---GRG 55
            + I  + +  F++Y      F         I +G  NG GKT +LEA+           
Sbjct: 2   NMWIHSIRLLNFKSYKEAAFSFPEPKNGQNIILIGAMNGHGKTTLLEAVYLCLYDTDAVS 61

Query: 56  F--RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              R    +      +    +   +     G   I +++E R  R  +      + IR  
Sbjct: 62  HLQRAGLNSKDINYPNFLQAALHHKAAPQYGRYRIELEIEIRQRRQGKIY---GLKIRRK 118

Query: 114 DELNK 118
              N+
Sbjct: 119 WHFNE 123


>gi|315613275|ref|ZP_07888184.1| cell division protein Smc [Streptococcus sanguinis ATCC 49296]
 gi|315314510|gb|EFU62553.1| cell division protein Smc [Streptococcus sanguinis ATCC 49296]
          Length = 1179

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 106/283 (37%), Gaps = 37/283 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   IK+E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVIVTLDNEDGFIKDAGQVIKVERHIYRSGDSEYRIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR----------VEMINALSSLIM 213
             ++     L            ++ Q+  L  +   AR             ++ L + I 
Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLAKQAENARKFLDLDSQRKAIYLDVLVAQIK 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           E   +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 236 ENKAELELTEEELTQVQELLTSYYQKREELEEE-NQTLKKKRQ 277


>gi|159905715|ref|YP_001549377.1| SMC domain-containing protein [Methanococcus maripaludis C6]
 gi|159887208|gb|ABX02145.1| SMC domain protein [Methanococcus maripaludis C6]
          Length = 993

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 105/274 (38%), Gaps = 48/274 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRASY 61
           + IK + +  FR++ +  + F+   T  +G NG GK++I +A++F      G  FR    
Sbjct: 1   MIIKNIKMENFRSHRNTSINFNKGITSIIGQNGSGKSSIFQAMNFALFAPRGSNFR---I 57

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--------VIRVV 113
            ++ + G+ SF      +E         +K +   +++   L +N          + + +
Sbjct: 58  ENLMQQGAASF---SVELEFEMMGNTYLVKRKRFQNKTDDKLYVNGKLNAESASEINKKI 114

Query: 114 DELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           +E+ +     +          +  +      +R+  + +++          +  +E+   
Sbjct: 115 EEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLG---------IEKYEKA-S 164

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            +  ++ + Y        +E ++ +          E++  L  L  E  + E      L 
Sbjct: 165 EKMNIVKKSY--EEMLFKLEGELVQE--------PEILENLEKLKNEVSESEILKKEILK 214

Query: 228 LTGFLDG---KFDQSFCALKEEYAK--KLFDGRK 256
             G L+    + +     ++E++A+  +L +  K
Sbjct: 215 KYGNLEKLKLEKNSELIQIEEKFAENNQLKENLK 248



 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           + D  +      +    G  GEQ  V + + L    +          ++LDE +A+LDED
Sbjct: 890 KDDYSLIVDGLPVETLSG--GEQIAVSLALRLG---ISKAVCNNIECIILDEPTAYLDED 944

Query: 330 KRNALFRI---VTDIGSQIFMTGTDKSVFDSLNET 361
           +R  L  I   +  I     +T       + + + 
Sbjct: 945 RRKNLLNIFKNIKTINQMAIIT--HHQELEQIADN 977


>gi|229192017|ref|ZP_04318987.1| Chromosome partition protein smc [Bacillus cereus ATCC 10876]
 gi|228591568|gb|EEK49417.1| Chromosome partition protein smc [Bacillus cereus ATCC 10876]
          Length = 1189

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAEHVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +  +         +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           KL   R+   +     T        LIV+  +KA
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|153828394|ref|ZP_01981061.1| RecF/RecN/SMC N domain protein [Vibrio cholerae 623-39]
 gi|148876103|gb|EDL74238.1| RecF/RecN/SMC N domain protein [Vibrio cholerae 623-39]
          Length = 617

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          + +  L +  FR Y  L + F++   + VG+N  GKT I+++I ++   + +
Sbjct: 1  MYLHCLKLENFRRYKQLEVEFNSGLNLLVGENDSGKTAIIDSIKYVLNTQSY 52


>gi|284050282|ref|ZP_06380492.1| ATPase [Arthrospira platensis str. Paraca]
 gi|291566863|dbj|BAI89135.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 369

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/395 (17%), Positives = 132/395 (33%), Gaps = 50/395 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHT-------IFVGDNGVGKTNILEAISF---LSPGR 54
           +K++ + I  F+ +  L + F            + +GDNG GKT +L+AI+    L+ GR
Sbjct: 1   MKVESIKIENFKRFQDLEISFKNNILDEVSDRYLILGDNGTGKTTLLQAIALPLALATGR 60

Query: 55  GFRRASYADVTRIGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRV 112
             R  +  +         F   + ++E      +  +K  +   +     Q ++   +R 
Sbjct: 61  -IRDVADFNWIGFLPGRHFRWGSPKIEMQILFEEEELKTTSELAKKWYDAQPDEFKEMRE 119

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERL----- 165
             E     R+S L+            ER +F  R      I+ R +     F +L     
Sbjct: 120 FVEPGDSRRVSLLLNGDFWKAGDTPAERAQFRGRYYAQWLINRREQSVRHYFAKLPGVFW 179

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
                 L +    DSS   ++    +E    +       +  L   ++++ + +      
Sbjct: 180 FDQFRNLGSHSKPDSSR-DNLNESSSEASFDVG------VGILRQYLIDWHRNQESGIGD 232

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG-PHRSDLIVDYCDK--AI 282
            S +  L            E   KK+F  R    + +      P  S+      D     
Sbjct: 233 YSNSYLLQI----------ERLYKKVFPDRSFAGIEKMPSQNDPTGSETYFLLNDGYRTY 282

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
            +   S GEQ V  +         +        ++L+DEI  +L           +  I 
Sbjct: 283 DVQEMSAGEQSVFPL-----LYEFVRQQI-AYSVVLIDEIDLNLHPPAAQYFVSQLMKIE 336

Query: 343 --SQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
              Q  +T T      ++   ++  R+     LC+
Sbjct: 337 PTCQFIIT-THSDSVSNVVGESETYRLPGG-TLCL 369


>gi|117938807|gb|AAH03396.1| SMC2 protein [Homo sapiens]
          Length = 289

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|49481959|gb|AAT66691.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A84]
          Length = 573

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 92/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELXIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           +  A++ I +                   +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCCQKCAEVGIDVSEGMVVLRRDILANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   ++ E+   L           +           LD    A        +  +  +
Sbjct: 112 KLVTTAILREVGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGA---EMAEALARYRAV 166

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
                 L+ +        S  E QMA         R++++       +E    E     +
Sbjct: 167 YEQHEALVKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQATLELGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + A+++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYSAIQKSYEALSGEGRGLDSI 248


>gi|257893223|ref|ZP_05672876.1| chromosome partition protein SMC [Enterococcus faecium 1,231,408]
 gi|257896408|ref|ZP_05676061.1| chromosome partition protein SMC [Enterococcus faecium Com12]
 gi|257829602|gb|EEV56209.1| chromosome partition protein SMC [Enterococcus faecium 1,231,408]
 gi|257832973|gb|EEV59394.1| chromosome partition protein SMC [Enterococcus faecium Com12]
          Length = 1193

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLQLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|328950730|ref|YP_004368065.1| SMC domain protein [Marinithermus hydrothermalis DSM 14884]
 gi|328451054|gb|AEB11955.1| SMC domain protein [Marinithermus hydrothermalis DSM 14884]
          Length = 1081

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 84/275 (30%), Gaps = 35/275 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASY 61
           ++I+ L +  F+++A    L F    +  +G NG GK+N++EA+ F+  +  R  R    
Sbjct: 1   MRIERLILHGFKSFAERTVLEFPHGLSGIIGPNGSGKSNVIEALRFVVGARARELRGGRA 60

Query: 62  ADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR----- 111
            ++   G        F      +        +S ++E    + VR         +     
Sbjct: 61  EELIFHGGTGRPPMPFAEVILELTRGRERITVSRRIERDGSQEVRLNGRRASFRQIEQAL 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
               L ++         +  I              ++  ++      +       R    
Sbjct: 121 AGSGLGRNGYAIVGQGEVSGILHASPEV-------LLGHLED--AAGLRTVTLAHREAQA 171

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            L             EA +AEL  ++   R   +  L+       + +     +L +   
Sbjct: 172 RLERA----------EAHLAELSSEL-ARRQTDLERLAEEARAAQRAQALAAERLCVQRG 220

Query: 232 LDGKFDQSFCALKEEYAKKLFDGR--KMDSMSRRT 264
           L            +     +   +  + +   R+T
Sbjct: 221 LIQARVAELEREIQALRAAIQAAQDTQAELRERQT 255


>gi|293556819|ref|ZP_06675380.1| chromosome segregation protein SMC [Enterococcus faecium E1039]
 gi|291600903|gb|EFF31194.1| chromosome segregation protein SMC [Enterococcus faecium E1039]
          Length = 1193

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYTEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHVLEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|218459961|ref|ZP_03500052.1| hypothetical protein RetlK5_10859 [Rhizobium etli Kim 5]
          Length = 158

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  + +  +RN+      F+      +G+NG GKTN+  A+  +
Sbjct: 1  MHISGVQLVNYRNFERANFHFNKGINTIIGENGSGKTNLFRAMRLM 46


>gi|116283354|gb|AAH17845.1| SMC2 protein [Homo sapiens]
          Length = 289

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDEKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|79154018|gb|AAI07892.1| SMC2 protein [Homo sapiens]
          Length = 291

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|260555697|ref|ZP_05827917.1| chromosome segregation protein SMC [Acinetobacter baumannii ATCC
           19606]
 gi|260410608|gb|EEX03906.1| chromosome segregation protein SMC [Acinetobacter baumannii ATCC
           19606]
          Length = 1149

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 103/298 (34%), Gaps = 54/298 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELHFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   RIF   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192
             + +   +     R+ D    ++ + + L      +    ++E Q+           AE
Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLENQIRTLKIEILSFQAE 238

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             V++       +N L         + +     L  T  L  +  Q    L++E+ + 
Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296


>gi|293379493|ref|ZP_06625637.1| chromosome segregation protein SMC [Enterococcus faecium PC4.1]
 gi|292642016|gb|EFF60182.1| chromosome segregation protein SMC [Enterococcus faecium PC4.1]
          Length = 1193

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLQLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|109110705|ref|XP_001110075.1| PREDICTED: structural maintenance of chromosomes protein 2-like
           isoform 1 [Macaca mulatta]
 gi|109110707|ref|XP_001110214.1| PREDICTED: structural maintenance of chromosomes protein 2-like
           isoform 4 [Macaca mulatta]
 gi|109110711|ref|XP_001110295.1| PREDICTED: structural maintenance of chromosomes protein 2-like
           isoform 6 [Macaca mulatta]
 gi|297270473|ref|XP_002800070.1| PREDICTED: structural maintenance of chromosomes protein 2-like
           [Macaca mulatta]
          Length = 1197

 Score = 62.6 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKARSAEELKEMQDKIIKLQEE 266


>gi|315428019|dbj|BAJ49607.1| conserved hypothetical protein [Candidatus Caldiarchaeum
           subterraneum]
          Length = 539

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 8/135 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYADVT 65
           IK + +  F ++   R+       + VG NG GK++IL AIS  L      R    AD+ 
Sbjct: 13  IKEVILENFMSHEYSRIPLRRGLNVIVGPNGAGKSSILLAISVALGQTYTERGQRLADLI 72

Query: 66  RIGSPSFFSTFAR----VEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           R G+ S           V+G+  +  I   ++ +     ++       +   +   E+  
Sbjct: 73  RRGNESARVAVVFDNRPVDGVRPIPSINSDTVTITRFLKKTGEYWHYVNNRFKTKAEVGN 132

Query: 119 HLRISWLVPSMDRIF 133
            L    + P    I 
Sbjct: 133 LLSRIGINPDNVLII 147


>gi|296190449|ref|XP_002743201.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform
           1 [Callithrix jacchus]
 gi|296190451|ref|XP_002743202.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform
           2 [Callithrix jacchus]
 gi|296190453|ref|XP_002743203.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform
           3 [Callithrix jacchus]
          Length = 1197

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIVLEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKARSAEELKEMQDKVIKLQEE 266


>gi|218777924|ref|YP_002429242.1| SMC domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759308|gb|ACL01774.1| SMC domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 671

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 67/401 (16%), Positives = 122/401 (30%), Gaps = 81/401 (20%)

Query: 5   IKIKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRA 59
           + +  + I  FR +        +      T  VG+N  GK+ I++AI   L         
Sbjct: 1   MYLSKITIENFRCFGERDKKFEMSLKPGLTTLVGENDAGKSAIIDAIRYVLCT------- 53

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIK---LETRDDRSVRCLQINDVVIRVVDEL 116
           +  +  RI    F      V        I  K   LE    R+      +D         
Sbjct: 54  TDQEWLRIKENDF-----HVGANPKEIRIVCKFDDLEAHHQRAFIEYLTHDASGAKPPVF 108

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF---AIDPR--------HRRRMIDFERL 165
             H    W       I  G    R            +IDP+        + R + D ER 
Sbjct: 109 FLH----WTAKETGEIMKGRPYRRIELHSGEKGEGPSIDPKVRELLSVTYLRPLRDAERA 164

Query: 166 MRG-RNRLLTEGYFDSSWCS---------SIEAQMAELGVKINIARVEMINALSSLIMEY 215
           +   R   L++  + +                 +++  G  I      +I      I+E 
Sbjct: 165 LSAGRGSRLSQVLYHTEEVKSSGKPYGEGVANEELSVTG--IGELADALIKN-QPGIVET 221

Query: 216 VQKENFPHIKLSLTGFL--DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
            ++ +    KL+L G             A  +   ++L +                  DL
Sbjct: 222 RKQIDNHLEKLTLLGNPICSKVEVSGAAASPDVRLRQLLEKL----------------DL 265

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLA-HARLISNTTGFAPILLLDEISAHLDEDKRN 332
            +D   K      GS          +F+A    L++       +LL++E  AHL   ++ 
Sbjct: 266 SLDEIGKP---GLGSN-------NLLFMACELLLLAQENEGNRMLLIEEPEAHLHPQRQL 315

Query: 333 ALFRIVT----DIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
            + + +     +   QI +T    ++  ++      +   N
Sbjct: 316 QVMKTLQEEAEEKKIQIIVTTHSPNLASAIKLKGLTLIHEN 356


>gi|256851299|ref|ZP_05556688.1| chromosome segregation protein SMC [Lactobacillus jensenii
           27-2-CHN]
 gi|260660723|ref|ZP_05861638.1| chromosome segregation protein SMC [Lactobacillus jensenii
           115-3-CHN]
 gi|282933256|ref|ZP_06338643.1| chromosome segregation protein SMC [Lactobacillus jensenii 208-1]
 gi|256616361|gb|EEU21549.1| chromosome segregation protein SMC [Lactobacillus jensenii
           27-2-CHN]
 gi|260548445|gb|EEX24420.1| chromosome segregation protein SMC [Lactobacillus jensenii
           115-3-CHN]
 gi|281302760|gb|EFA94975.1| chromosome segregation protein SMC [Lactobacillus jensenii 208-1]
          Length = 1189

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L ++ F+++A   ++ F    T  VG NG GK+NI EAI ++   S  +  R ++
Sbjct: 1   MPLTELTLTGFKSFAEKTKIKFGDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGSN 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLET-RDDRSVRCLQ-------INDVVIR 111
             DV   GS        A VE +    + ++  +  R   + R L+       IN+  +R
Sbjct: 61  MKDVIFAGSQYRTPMNHAEVELVFENKNRALNFDADRVTVARRILRSGDSEYLINNQTVR 120

Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLD 145
           + D     +       S+        D I +     RR   +
Sbjct: 121 LKDVHALFMDSGISQDSLAIISQGKVDEILNSRPENRRAIFE 162


>gi|297206168|ref|ZP_06923563.1| chromosome segregation protein Smc [Lactobacillus jensenii JV-V16]
 gi|297149294|gb|EFH29592.1| chromosome segregation protein Smc [Lactobacillus jensenii JV-V16]
          Length = 1189

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L ++ F+++A   ++ F    T  VG NG GK+NI EAI ++   S  +  R ++
Sbjct: 1   MPLTELTLTGFKSFAEKTKIKFGDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGSN 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLET-RDDRSVRCLQ-------INDVVIR 111
             DV   GS        A VE +    + ++  +  R   + R L+       IN+  +R
Sbjct: 61  MKDVIFAGSQYRTPMNHAEVELVFENKNRALNFDADRVTVARRILRSGDSEYLINNQTVR 120

Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLD 145
           + D     +       S+        D I +     RR   +
Sbjct: 121 LKDVHALFMDSGISQDSLAIISQGKVDEILNSRPENRRAIFE 162


>gi|71064894|ref|YP_263621.1| condensin subunit Smc [Psychrobacter arcticus 273-4]
 gi|71037879|gb|AAZ18187.1| condensin subunit Smc [Psychrobacter arcticus 273-4]
          Length = 1307

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/248 (18%), Positives = 91/248 (36%), Gaps = 31/248 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K L ++ F+++A+     F    T  VG NG GK+N+++AI ++   +  +  R  +
Sbjct: 1   MRLKSLKLAGFKSFANPTTFTFRHGITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60

Query: 61  YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105
            +DV   G       + A VE       +    I  +     + SVR            I
Sbjct: 61  MSDVIFAGTQDKAAKSVASVELTFEHTQDEKTGIRHEFNLYQELSVRRQVNLDGRSDYFI 120

Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
           N    R  D         L            + RI     M+ R F++        R++ 
Sbjct: 121 NGTRCRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEAAG--VSRYQA 178

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
           R  + ++ ++     L   +   S   S + ++++     +  R E +    + I + + 
Sbjct: 179 RREETQKKLKRTQDNLARLHDMQSELVSQQKRLSKQAA--SAERYEELALTLADIKQQLA 236

Query: 218 KENFPHIK 225
            +     K
Sbjct: 237 IQQLYQAK 244


>gi|329569637|gb|EGG51403.1| RecF/RecN/SMC protein [Enterococcus faecalis TX1467]
          Length = 485

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 123/379 (32%), Gaps = 42/379 (11%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + I  + +S F+++     +        FVG+N  GKT I +AI F+  G+     +  D
Sbjct: 1   MYISKIKLSNFKSFRGKHTIDLSKGVNFFVGNNNCGKTTIFKAIEFIQSGK-----NKFD 55

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               G   F +    VE      DI   LE +  +      I++           H    
Sbjct: 56  FITKG---FETENVSVEVEFKGDDILSLLENKGLKKYENYVIDNGD-------GTHSIRI 105

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
                   I  G        +   +  I   +     + E L    N+       D +  
Sbjct: 106 LRSSEEKEIIQGTKK-----ISLDISKI-RVYNPCSSESEEL----NKFENPTGIDKTIS 155

Query: 184 SSIEAQMAELGVKINIAR----VEMINALSSLIMEYVQKENFPH--IKLSLTGFLDGKFD 237
           +  +AQ     +K          +++  + +   +  QK        +     F +    
Sbjct: 156 ALFDAQFIYSDLKNEEYHDFGFTKILGKIITDSTKGFQKGEIWKDFARAHNKTFGNEGLG 215

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS------DLIVDYCDKAITIAHGSTGE 291
                ++ E +  L +    D   +     P         +L++       TI+   TG 
Sbjct: 216 NILAEVEVEISNVLKEQYG-DGEVKFNFGLPEIDSFYKTGNLLMADNGNYTTISEKGTGM 274

Query: 292 QKVVLVGIFLAHARLISNTTGFAPI-LLLDEISAHLDEDKRNALFRIVTDI--GSQIFMT 348
           Q+ + + +   ++ +  N  G  PI   +DE    L    ++ L   +  +   SQ+F+T
Sbjct: 275 QRALALSLIQVYSGIAKNEIGSKPIMFFIDEPETFLHPKAQDKLIDSLNRLADKSQVFIT 334

Query: 349 GTDKSVFDSLNETAKFMRI 367
                +    N   + + I
Sbjct: 335 THSPYLLRKFNSDTQQINI 353


>gi|303390903|ref|XP_003073682.1| chromosome segregation protein [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302829|gb|ADM12322.1| chromosome segregation protein [Encephalitozoon intestinalis ATCC
           50506]
          Length = 1014

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 6/127 (4%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + IK + +  F+++    L  F     I VG NG GK++I+ AI F+  G  +   S  +
Sbjct: 1   MHIKQIRLKNFKSFKDETLVEFTENVNIIVGRNGSGKSSIVSAIRFVLCGEKYNCESRME 60

Query: 64  VTRIG----SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +   G                G          ++   D       +++  I   DEL   
Sbjct: 61  LIHEGSRASEEEASVEIVFDSGSPESLGKGFSIKRVVDAKKDEYMLDNKTISR-DELGGL 119

Query: 120 LRISWLV 126
           L+     
Sbjct: 120 LQGHGFA 126



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 29/166 (17%)

Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE---EYAKKLFDG 254
              R+E +      I E++           L    +G   ++   ++E   E+  +L +G
Sbjct: 835 IRKRLEELKDDKRHISEFIA---------ELDSRKEGAMGKAMSVVEEGFSEFYSRLTEG 885

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
            K +  S  + IG            K +  +  S G++ VV + +  +           +
Sbjct: 886 GKAELYSYESSIGIK--------VGKDVGTSLLSGGQKAVVALSLIFS-----MQRVNPS 932

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFD 356
           P+ + DEI A+LD   R  +  ++ ++    GSQ  +T   K + +
Sbjct: 933 PLYVFDEIDANLDAQSRQKVSMLIKEMSERNGSQFIITTFRKELLN 978


>gi|322375350|ref|ZP_08049863.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C300]
 gi|321279613|gb|EFX56653.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C300]
          Length = 1179

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 106/283 (37%), Gaps = 37/283 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   IK+E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVIVTLDNEDGFIKDAGQVIKVERHIYRSGDSEYRIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----------EMINALSSLIM 213
             ++     L            ++ Q+  L  +   AR             ++ L + I 
Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLAKQAENARKFLDLDGQRKTIYLDVLVAQIK 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           E   +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 236 ENKTELELTEEELTQVQELLTSYYQKREELEEE-NQSLKKKRQ 277


>gi|313901968|ref|ZP_07835384.1| chromosome segregation protein SMC [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467757|gb|EFR63255.1| chromosome segregation protein SMC [Thermaerobacter subterraneus
           DSM 13965]
          Length = 1242

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 80/232 (34%), Gaps = 36/232 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A   RL F    T  VG NG GK+N+++A+ ++      R  R + 
Sbjct: 1   MYLKRLELYGFKSFADRTRLEFGPGITAIVGPNGSGKSNLVDAVRWVLGEQSARQLRGSR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +G   I     T   R  R       +N   +R
Sbjct: 61  MEDVIFAGTATRKGVGLAEVVLVLDNEDGRLPIDYTEVTVARRVDRAGGSDYLLNGQRVR 120

Query: 112 VVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161
           + D         + +          +D I S    +RR  L+    +     R +  +  
Sbjct: 121 LRDVQELLYDTAIGREAYSVVGQGKIDEILSARDEDRRGLLEEAAGITRFKVRKKEALRR 180

Query: 162 FE-------------RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
            E             R +  R   LTE    +        ++ +L  ++  A
Sbjct: 181 LEDAEHRLLRLGDILRELEDRLDGLTEQARRAHLYRQWRDELVDLEARMVTA 232


>gi|294500964|ref|YP_003564664.1| chromosome segregation protein SMC [Bacillus megaterium QM B1551]
 gi|294350901|gb|ADE71230.1| chromosome segregation protein SMC [Bacillus megaterium QM B1551]
          Length = 1186

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 110/283 (38%), Gaps = 43/283 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L+I+ F+++A  + + F    T  VG NG GK+NI +AI ++      +  R   
Sbjct: 1   MFLKRLDIAGFKSFAEKVSIDFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFSTFA-----RVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS S  +         +E  +    +    + +  R  RS      IN+   R
Sbjct: 61  MEDIIFAGSESRRAVNVADVTLTLENDDQFLPLDYHEVSITRRVYRSGDSEFFINNQPCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
            + ++      S L      I S           S ERR+  +             ++ +
Sbjct: 121 -LKDIVDLFMDSGLGREAFSIISQGKVEEVLSSKSDERRKIFEEAAG---------VLKY 170

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENF 221
           +   R R   L       +    ++  + E+  ++     E +   SS+  +Y+Q KE  
Sbjct: 171 KT--RKRKAELRLLETQENLNRVVDI-LHEIEGQL-----EPLQIQSSIAKDYLQKKEEL 222

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYA--KKLFDGRKMDSMSR 262
            HI +++T F      Q +  LK E A  ++L +    +  +R
Sbjct: 223 EHIDVAVTVFEVEDLHQKWEKLKAEMAQHEQLEESLATNIRTR 265


>gi|257887974|ref|ZP_05667627.1| chromosome partition protein SMC [Enterococcus faecium 1,141,733]
 gi|257824028|gb|EEV50960.1| chromosome partition protein SMC [Enterococcus faecium 1,141,733]
          Length = 1193

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 101/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLQLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +       +L+      GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWGNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|332222395|ref|XP_003260355.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform
           1 [Nomascus leucogenys]
 gi|332222397|ref|XP_003260356.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform
           2 [Nomascus leucogenys]
 gi|332222399|ref|XP_003260357.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform
           3 [Nomascus leucogenys]
          Length = 1197

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 98/291 (33%), Gaps = 36/291 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN------ALSSLIMEYVQ 217
           ++   +     E        + +E ++     K+   R   +        +  L   Y+ 
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLEYQKVMREIEHLSRLYIA 236

Query: 218 KENFPHIKLSLTGFLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRR 263
            +        +    + K  Q         L E   K     R+++ + +R
Sbjct: 237 YQFLLAEDTKVRSAEELKEMQDKVIKLQEELSENDKKIKALNREIEELEKR 287


>gi|295397857|ref|ZP_06807920.1| SMC family domain protein [Aerococcus viridans ATCC 11563]
 gi|294973902|gb|EFG49666.1| SMC family domain protein [Aerococcus viridans ATCC 11563]
          Length = 1191

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 101/283 (35%), Gaps = 39/283 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A    + FD   T  VG NG GK+NI EAI   L     +  R + 
Sbjct: 1   MYLKTVEMVGFKSFADKTTIEFDNGFTAIVGPNGSGKSNITEAIKWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIGSPSFFS-TFARVEGMEGLADISIKLETRDDRSVRC--------LQINDVVIR 111
            +DV   G+       +A+V      +D ++  ET +    R           IN    R
Sbjct: 61  MSDVIFAGAEDRRKGQYAQVTLTFDNSDRALNFETDEVAVSRRYTAAGDSEYMINRRPCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
            + ++ + +  + +      I S             +RR   +     +   ++ R  + 
Sbjct: 121 -LRDITELMMDTGIGRDSFSIISQGKVEQIFTQKPEDRRGIFEEAAGVMK--YKSRKHEA 177

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           ER ++           + +     +  ++EL  +I      +    ++ +     K    
Sbjct: 178 ERKLKH---------TEENLHRIYDI-LSELADRI----EPLEEQKNAALRYKASKAELS 223

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
            I+++LT       ++ +   K +      D     +   +T 
Sbjct: 224 DIEIALTAVQIETLNEQWQVAKNDILAYGEDIHNRRAALTKTQ 266


>gi|289435147|ref|YP_003465019.1| chromosome segregation protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171391|emb|CBH27935.1| chromosome segregation protein [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 1186

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 21/174 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS S     FA V  +    D  + L+  +    R +  N             
Sbjct: 61  MGDVIFAGSDSRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGDSEFLINKENCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRR 157
           + ++      S L      I S             ERR   +     +  +HR+
Sbjct: 121 LKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSIFEEAAGVLKYKHRK 174


>gi|254413646|ref|ZP_05027416.1| hypothetical protein MC7420_6225 [Microcoleus chthonoplastes PCC
           7420]
 gi|196179753|gb|EDX74747.1| hypothetical protein MC7420_6225 [Microcoleus chthonoplastes PCC
           7420]
          Length = 381

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 70/378 (18%), Positives = 119/378 (31%), Gaps = 61/378 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I+ FR +    L    +  + VG N  GKT+ILEAI  L   +G        +T 
Sbjct: 2   LKNLTINNFRCFKHFELQQLGRVNLLVGKNNSGKTSILEAIQLLCS-KGNPEPLLDAMTN 60

Query: 67  IGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G   +    +  R E    +  +    E         L  ND +      L   +    
Sbjct: 61  RGEYCWSDDISRGRRERELDICHLFHGHEIELGSEFLILASNDNIENK---LFGSIGKQS 117

Query: 125 LVPSMDRIFS--GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           +    D        +     F D ++   +                 N   T+G    SW
Sbjct: 118 IASKADSEIESDESTSVVEEFPDNLI---ELGF--------------NISWTDGNKPESW 160

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---------ENFPHIKLSLTGFLD 233
              + +        I   R     + ++ I +Y+           E F  + L+    L 
Sbjct: 161 KHILSSNGGLSEDYIRRWRFRGKPSKNAAINQYITSSSLTTKNMIELFNQVVLTADEMLV 220

Query: 234 GKFDQSFCALKEEYAKKLFD---GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            K  Q+     E  A   ++    R ++S              +V   D    +  GS G
Sbjct: 221 YKALQTIEPKIERIASITYEYESHRYLESRGG----------FVVRLADSDQRVPIGSMG 270

Query: 291 EQ--KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD----EDKRNALFRIVTDIGSQ 344
           +   +++ + +        S       +LL+DEI   L     ED    +      +  Q
Sbjct: 271 DGIWRMLGLAL--------STVCAKGGVLLVDEIDTGLHFTAMEDMWKLILETAKKLNVQ 322

Query: 345 IFMTGTDKSVFDSLNETA 362
           +F T  +   + SL   A
Sbjct: 323 VFATTHNSDCWTSLASIA 340


>gi|149183217|ref|ZP_01861663.1| Smc [Bacillus sp. SG-1]
 gi|148849082|gb|EDL63286.1| Smc [Bacillus sp. SG-1]
          Length = 1189

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 29/225 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L++  F+++   + + F    T  VG NG GK+NI++AI   L     +  R A 
Sbjct: 1   MFLKQLDVIGFKSFAERISVDFVPGVTAVVGPNGSGKSNIIDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS S     F      ++  +G   I     +   R  R       +N    R
Sbjct: 61  MEDVIFAGSDSRKPLNFAEVTLTLDNNDGALPIEYSEVSVTRRVFRSGDSEYLLNKQPCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
            + ++ +    S L      I S             ERR   +     +   ++ R    
Sbjct: 121 -LKDIIELFMDSGLGKEAFSIISQGKVEEILNSKPEERRTIFEDAAGVLK--YKNRKKKA 177

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           E  +      L          S +E Q+  L ++ ++AR + +  
Sbjct: 178 EAKLHETQENLNRVN---DIISELEGQVEPLKIQASMAR-DYLEK 218


>gi|237728394|ref|ZP_04558875.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226909872|gb|EEH95790.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 575

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/369 (15%), Positives = 113/369 (30%), Gaps = 59/369 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYADVT 65
           I+ ++I  FR                +G    GK+ I++AI   L   R F   S AD  
Sbjct: 4   IRHISIQNFRAVRQAEWCPGPSLNCLIGPGDSGKSTIIDAIDLVLGARRSF-TFSDADFH 62

Query: 66  RIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + + +       + +  +GL ++          ++   +I+D  +   DE    LR+  
Sbjct: 63  LMNTATPICISITLGQLDDGLLNLEAYGRYFRGFNIETKEIHDEPL-AGDETVLTLRMVV 121

Query: 125 ---LVPS----MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
              L P      +R  +    +R ++  R    + P               R+ L     
Sbjct: 122 EDDLEPDWLLFSERTTAEGLEKRLQWKHRE--QLSPTRLGAASHHHLAWGNRSVLNKLSD 179

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            D +  +++                     LS    +       P +   LT        
Sbjct: 180 EDFNVSATL-------------------AELSRQTRQSFAARELPQLDAILTEVRTIANS 220

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD-YCDKAITIAHGSTGEQKVVL 296
                 +    K L D           + G   S+  +  + +    +    TG  ++++
Sbjct: 221 LGVPVGE---LKALLD-----------VNGVSLSNSAISLHNNDNTPLRMLGTGSTRLLV 266

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG----SQIFMTGTDK 352
            G+            G    +L+DE    L+  + + L   +        SQ+F+T    
Sbjct: 267 SGL--------QKAVGRPGTILIDEAEYGLEPYRISQLLHQLGSRDPEPTSQVFITTHSP 318

Query: 353 SVFDSLNET 361
            V   L  T
Sbjct: 319 YVLRELQAT 327


>gi|209527433|ref|ZP_03275938.1| AAA ATPase [Arthrospira maxima CS-328]
 gi|209492106|gb|EDZ92456.1| AAA ATPase [Arthrospira maxima CS-328]
          Length = 378

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/396 (17%), Positives = 132/396 (33%), Gaps = 48/396 (12%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHT-------IFVGDNGVGKTNILEAISF---LSP 52
           N +K++ + I  F+ +  L + F            + +GDNG GKT +L+AI+    L+ 
Sbjct: 8   NYMKVESIKIENFKRFQDLEISFKNNILDEVSDRYLILGDNGTGKTTLLQAIALPLALAT 67

Query: 53  GRGFRRASYADVTRIGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRCLQIND-VVI 110
           GR  R  +  +         F   + ++E      +  +K  +   +     Q ++   +
Sbjct: 68  GR-IRDVADFNWIGFLPGRHFRWGSPKIEMQILFEEEELKTTSELAKKWYDAQPDEFKEM 126

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERL--- 165
           R   E     R+S L+            ER +F  R      I+ R +     F +L   
Sbjct: 127 REFVEPGDSRRVSLLLNGDFWKAGDTPAERAQFRGRYYAQWFINRREQSVRHYFAKLPGV 186

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
                   L +    DSS   ++    ++    +       +  L   ++++ + +    
Sbjct: 187 FWFDQFRNLGSHSKPDSSR-DNLNESSSQASFDVG------VGILRQYLIDWHRNQESGI 239

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
              S +  L          ++  Y K   D          T   P  S+      D   T
Sbjct: 240 GDYSNSYLL---------QIERLYQKVFPDRSFAGIEKLPTQNDPTGSETYFLLNDGYRT 290

Query: 284 --IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
             +   S GEQ V  +         +        ++L+DEI  +L           +  I
Sbjct: 291 YDVQEMSAGEQSVFPL-----LYEFVRQQI-AYSVVLIDEIDLNLHPPAAQYFVSQLMKI 344

Query: 342 G--SQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
               Q  +T T      ++   ++  R+     LC+
Sbjct: 345 EPTCQFIIT-THSDSVSNVVGESETYRLPGG-TLCL 378


>gi|297685015|ref|XP_002820101.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of
           chromosomes protein 2-like [Pongo abelii]
          Length = 1198

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|269214498|ref|ZP_06158610.1| putative DNA sulfur modification protein DndD [Neisseria lactamica
           ATCC 23970]
 gi|269209648|gb|EEZ76103.1| putative DNA sulfur modification protein DndD [Neisseria lactamica
           ATCC 23970]
          Length = 507

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 13/124 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHT----IFVGD-NGVGKTNILEAISFLSP---GRGF 56
           + I  + +  F++Y      F         I +G  NG GKT +LEA+            
Sbjct: 1   MWIHSIRLLNFKSYKEAAFSFPEPKNGQNIILIGAMNGHGKTTLLEAVYLCLYDTDAVSH 60

Query: 57  --RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             R    +      +    +   +     G   I +++E R  R  +      + IR   
Sbjct: 61  LQRAGLNSKDINYPNFLQAALHHKAAPQYGRYRIELEIEIRQRRQGKIY---GLKIRRKW 117

Query: 115 ELNK 118
             N+
Sbjct: 118 HFNE 121


>gi|27377041|ref|NP_768570.1| hypothetical protein bll1930 [Bradyrhizobium japonicum USDA 110]
 gi|27350183|dbj|BAC47195.1| bll1930 [Bradyrhizobium japonicum USDA 110]
          Length = 836

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 36/223 (16%)

Query: 144 LDRMVFAIDPRHRRRMIDFERLMR---GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
           +D      D  + +     +RL+     R+  L           ++ AQ   +  +I   
Sbjct: 455 VDIESKQGDHTYIKAKTKIDRLLELQSERDLALRTRTQLGKLSDALTAQATIISAEIRKK 514

Query: 201 RVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
              +++ L + + +  ++        + L    +   +Q    L  ++AK          
Sbjct: 515 VQTLLDKLQTPMNDIYKRIQGAGAAPIRLELPAEDDTNQQRLNLLIDFAKN--------- 565

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
              RT + P                 + S  +   V + + +A    I      API+ L
Sbjct: 566 ---RTGVQPG---------------GYLSDSQIHSVALALRMA---AIKQFNAGAPIIAL 604

Query: 320 DEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNE 360
           D+I    D D R  +  ++  +    QI +T  D+  F+ L +
Sbjct: 605 DDIVTSYDADHRRTIAGLIATMFGDCQILITTHDERFFNYLKD 647



 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 74/210 (35%), Gaps = 30/210 (14%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ L +S FR Y       F  +  +     NG GK+++++A+ F+        +    +
Sbjct: 17  LQSLGLSGFRAYLQPKTFDFSKKRCLAIFAPNGSGKSSVIDALEFMF-------SKDGTL 69

Query: 65  TRIGS-----PSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNK 118
            R+G       +     A     E     ++ +     + +    +      R +  +  
Sbjct: 70  ERLGQRTINNQAGPVAMAHNLSEEAKIAPAVTIGVVSGKDATNGSRPATGTKRPIPAVAT 129

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR--------MIDFERLMRGRN 170
            L   + VP    I  G ++  R F++  +   + R+           +++ ++ +R   
Sbjct: 130 TLNACFAVPP---IIRGHAL--RTFVE--IHTPEQRYTDVANWLQLGPLVEVQKNIRALR 182

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
             +     D +     + Q+A    ++  A
Sbjct: 183 TQVKAASEDGTALQRADTQLARKTAQVVKA 212


>gi|12620631|gb|AAG60907.1|AF322013_26 ID485 [Bradyrhizobium japonicum]
          Length = 826

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 36/223 (16%)

Query: 144 LDRMVFAIDPRHRRRMIDFERLMR---GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
           +D      D  + +     +RL+     R+  L           ++ AQ   +  +I   
Sbjct: 445 VDIESKQGDHTYIKAKTKIDRLLELQSERDLALRTRTQLGKLSDALTAQATIISAEIRKK 504

Query: 201 RVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
              +++ L + + +  ++        + L    +   +Q    L  ++AK          
Sbjct: 505 VQTLLDKLQTPMNDIYKRIQGAGAAPIRLELPAEDDTNQQRLNLLIDFAKN--------- 555

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
              RT + P                 + S  +   V + + +A    I      API+ L
Sbjct: 556 ---RTGVQPG---------------GYLSDSQIHSVALALRMA---AIKQFNAGAPIIAL 594

Query: 320 DEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNE 360
           D+I    D D R  +  ++  +    QI +T  D+  F+ L +
Sbjct: 595 DDIVTSYDADHRRTIAGLIATMFGDCQILITTHDERFFNYLKD 637



 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 74/210 (35%), Gaps = 30/210 (14%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ L +S FR Y       F  +  +     NG GK+++++A+ F+        +    +
Sbjct: 7   LQSLGLSGFRAYLQPKTFDFSKKRCLAIFAPNGSGKSSVIDALEFMF-------SKDGTL 59

Query: 65  TRIGS-----PSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNK 118
            R+G       +     A     E     ++ +     + +    +      R +  +  
Sbjct: 60  ERLGQRTINNQAGPVAMAHNLSEEAKIAPAVTIGVVSGKDATNGSRPATGTKRPIPAVAT 119

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR--------MIDFERLMRGRN 170
            L   + VP    I  G ++  R F++  +   + R+           +++ ++ +R   
Sbjct: 120 TLNACFAVPP---IIRGHAL--RTFVE--IHTPEQRYTDVANWLQLGPLVEVQKNIRALR 172

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
             +     D +     + Q+A    ++  A
Sbjct: 173 TQVKAASEDGTALQRADTQLARKTAQVVKA 202


>gi|226940717|ref|YP_002795791.1| RecF [Laribacter hongkongensis HLHK9]
 gi|226715644|gb|ACO74782.1| RecF [Laribacter hongkongensis HLHK9]
          Length = 610

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 3/122 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + +  F+   S RL      T+  G NG GK+++LEA+     G   R A   D 
Sbjct: 1   MKLTRIEVQNFQGLRSARLALTTPVTLIAGRNGAGKSSLLEAVRMAMSGDPVRVARKKDC 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            ++ +    +   RVE  +G       +   D +  R  QI +   +    L   L    
Sbjct: 61  VQLVTDGHKAGMVRVEFADGRFAT---VALPDGKVNRHGQIVEDPDKARAALPYVLDAPL 117

Query: 125 LV 126
             
Sbjct: 118 FS 119


>gi|85712484|ref|ZP_01043533.1| Chromosome segregation ATPase, sms [Idiomarina baltica OS145]
 gi|85693762|gb|EAQ31711.1| Chromosome segregation ATPase, sms [Idiomarina baltica OS145]
          Length = 581

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 104/292 (35%), Gaps = 41/292 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F  Q T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLKHIKLAGFKSFVDATKVPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS +            F +T  R++G      +IS+K +   D        N 
Sbjct: 61  MTDVIFNGSQARKPVSQASVELVFDNTSGRIQGEFASYNEISVKRQVTRDGQSNYFLNNS 120

Query: 108 VVIRV-----------------VDELNKHLRISWLVPSMDRIFSGLSM------ERRRFL 144
              R                  + E     R+    P   RIF   +       ERR+  
Sbjct: 121 KCRRRDITDLFLGTGLGPRSYAIIEQGMISRLIESKPQELRIFIEEAAGISKYKERRKET 180

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204
           +  +      +  R+ D    +  + + L      +     ++AQ  +L   +  +R   
Sbjct: 181 ENRMLH-TRENLERISDVREELGQQLQKLQRQAAAAHRYKELKAQERDLRALLLSSRWWQ 239

Query: 205 INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +N   + + E          +       D K   S     EE  +++   ++
Sbjct: 240 LNEKQNQLREQRSHYRLELDRWQTEQTGDEKGVISLREHAEELKQRVEQAQQ 291


>gi|294618514|ref|ZP_06698076.1| chromosome segregation protein SMC [Enterococcus faecium E1679]
 gi|291595214|gb|EFF26545.1| chromosome segregation protein SMC [Enterococcus faecium E1679]
          Length = 1193

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|293567879|ref|ZP_06679220.1| chromosome segregation protein SMC [Enterococcus faecium E1071]
 gi|291589464|gb|EFF21271.1| chromosome segregation protein SMC [Enterococcus faecium E1071]
          Length = 1193

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|229180124|ref|ZP_04307468.1| Chromosome partition protein smc [Bacillus cereus 172560W]
 gi|228603333|gb|EEK60810.1| Chromosome partition protein smc [Bacillus cereus 172560W]
          Length = 1189

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +  +         +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKNEEAKMSTDLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           KL   R+   +     T        LIV+  +KA
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|255539813|ref|XP_002510971.1| structural maintenance of chromosomes 6 smc6, putative [Ricinus
           communis]
 gi|223550086|gb|EEF51573.1| structural maintenance of chromosomes 6 smc6, putative [Ricinus
           communis]
          Length = 1058

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 80/240 (33%), Gaps = 26/240 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           +  + +  F  +++L++          G NG GK+ IL A+      R     R ++  D
Sbjct: 22  VTRIRLENFMCHSNLQIELCPWVNFITGQNGSGKSAILTALCIAFGSRAKGTQRASTLKD 81

Query: 64  VTRIGSPSFFS-TFARVEGMEGLAD------ISIKLETRDDRSVRCLQ-INDVVIRV--- 112
             + G          + EG E          I I+       S   L+      +     
Sbjct: 82  FIKTGCSYAVVEVEVKNEGDEAFKPEIYGDAIIIERRINQSTSSTVLKDFQGKKVASRKE 141

Query: 113 -VDELNKHL------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            + EL +H           +     R F     +R +F       +  +    +      
Sbjct: 142 ELRELIEHFNIDVENPCVIMSQDKSREFLHSGNDRDKFKFFFKATLLQQVNDLLQSIYEQ 201

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           ++  N  + E     +    IE ++AEL VKI    +E I  +S  + +  +K  +  + 
Sbjct: 202 LKSTNAFVDEL---EATIKPIEKELAELQVKI--KNMEHIEEISQQVQQLKKKLAWSWVY 256


>gi|291519530|emb|CBK74751.1| RecF/RecN/SMC N terminal domain [Butyrivibrio fibrisolvens 16/4]
          Length = 221

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 21/166 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A  ++  F    T  VG NG GK+N+ +A+   L     +  R AS
Sbjct: 1   MYLKSIELYGFKSFAHKMKFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+      ++  + +  +  +  T   R  R       +N    R
Sbjct: 61  MQDVIFAGTEARKPLSYAYVALTMDNSDHVLPVDYEEVTIARRVYRSGESEYLLNGTPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149
           + D         + K          +++I SG   +RR   D  V 
Sbjct: 121 LKDVAELFYDTGVGKEGYSIIGQGQIEKILSGKPEDRRELFDEAVG 166


>gi|257878771|ref|ZP_05658424.1| chromosome partition protein SMC [Enterococcus faecium 1,230,933]
 gi|257812999|gb|EEV41757.1| chromosome partition protein SMC [Enterococcus faecium 1,230,933]
          Length = 1193

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|4020|emb|CAA28789.1| unnamed protein product [Saccharomyces cerevisiae]
          Length = 184

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK + +  F  +    L   ++    VG+NG GK+ IL AI+     +     R +S  D
Sbjct: 82  IKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITIGLGAKASETNRGSSLKD 141

Query: 64  VTRIGS 69
           + R G 
Sbjct: 142 LIREGC 147


>gi|57642146|ref|YP_184624.1| chromosome segregation protein [Thermococcus kodakarensis KOD1]
 gi|68565874|sp|Q5JHN1|RAD50_PYRKO RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|57160470|dbj|BAD86400.1| DNA double-strand break repair ATPase Rad50 homolog [Thermococcus
           kodakarensis KOD1]
          Length = 883

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ L I +FR++A  ++ F +   + +G NG GK++IL+A+               D+
Sbjct: 1   MKIEKLIIKDFRSHALTKVNFSSGINLIIGQNGSGKSSILDALLVGLYWPS----KPKDL 56

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
            +        +   +       ++  ++     R +  ++ +D
Sbjct: 57  KKDDFERINGSGTEITVFFEKGNVKYQIHRNIGRGLAFVKYHD 99



 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 10/144 (6%)

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-HRSDLIVDYCDKAITIAHGSTGEQKV 294
             +   A   E A ++F+    +  S  T+    ++  L V Y  K   +   S GE+  
Sbjct: 739 LKEGALAKVGEMASEIFEELTEEKYSGVTVKAEENKVRLGVVYNGKEYGLGFLSGGERIA 798

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---DIGSQIFMTGTD 351
           + +   LA +  ++   G   +L+LDE + +LDE++R  L  I+        Q+ +   D
Sbjct: 799 LGLAFRLALSLYLA---GEISLLILDEPTPYLDEERRRRLVDIMQRYLRKIPQVIVVSHD 855

Query: 352 KSVFDSLNETAKFMRISNHQALCI 375
           + + D+ +   + +R+S    + +
Sbjct: 856 EELKDAAD---RVIRVSLENGVSV 876


>gi|317121791|ref|YP_004101794.1| chromosome segregation protein SMC [Thermaerobacter marianensis DSM
           12885]
 gi|315591771|gb|ADU51067.1| chromosome segregation protein SMC [Thermaerobacter marianensis DSM
           12885]
          Length = 1184

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/232 (18%), Positives = 80/232 (34%), Gaps = 36/232 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A   RL F    T  VG NG GK+N+++A+ ++      R  R + 
Sbjct: 1   MYLKRLELYGFKSFADRTRLEFGPGITAIVGPNGSGKSNLVDAVRWVLGEQSARQLRGSK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +G   I     T   R  R       +N   +R
Sbjct: 61  MEDVIFAGTATRKGVGLAEVVLVLDNEDGQLPIDYSEVTVARRVDRAGGSDYLLNGQRVR 120

Query: 112 VVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161
           + D         + +          +D I S    +RR  L+    +     R +  +  
Sbjct: 121 LRDVQELLYDTAIGREAYSVVGQGKIDEILSARDEDRRGLLEEAAGIVRFKVRKKEALRR 180

Query: 162 FE-------------RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
            E             R +  R   LTE    +        ++ +L  ++  A
Sbjct: 181 LEDAERRLERLGDILRELEDRLDGLTEQAKRAHLYRQWRDELVQLEARMVTA 232


>gi|228940936|ref|ZP_04103495.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973865|ref|ZP_04134441.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980455|ref|ZP_04140765.1| Chromosome partition protein smc [Bacillus thuringiensis Bt407]
 gi|228779275|gb|EEM27532.1| Chromosome partition protein smc [Bacillus thuringiensis Bt407]
 gi|228785890|gb|EEM33893.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818772|gb|EEM64838.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326941617|gb|AEA17513.1| chromosome partition protein smc [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 1189

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 62/333 (18%), Positives = 107/333 (32%), Gaps = 57/333 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV---VIRVVDEL 116
             D+   GS +      A V       D  + +E  +    R +  +      I      
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGESDFYINKQSCR 120

Query: 117 NKHLRISWLVPSMDR-------------IFSGLSMERRRFLDRMVFAIDPRHR------- 156
            K +   ++   M R             I S  S ERR   +     +  + R       
Sbjct: 121 LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEGK 180

Query: 157 -----RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGVK 196
                  +   + ++           R   + + Y  +      +EA +      EL  K
Sbjct: 181 LEETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHEK 240

Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AKK 250
               R +  +  +         +        L G L    D+S  +L+E         +K
Sbjct: 241 WEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELEK 299

Query: 251 LFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           L   R+   +     T        LIV+  +KA
Sbjct: 300 LEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|327200667|pdb|3QKR|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
 gi|327200670|pdb|3QKS|A Chain A, Mre11 Rad50 Binding Domain Bound To Rad50
          Length = 203

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K++ + +  FR+++   + F     + +G NG GK+++L+AI
Sbjct: 1  MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43


>gi|257881411|ref|ZP_05661064.1| chromosome partition protein SMC [Enterococcus faecium 1,231,502]
 gi|257890629|ref|ZP_05670282.1| chromosome partition protein SMC [Enterococcus faecium 1,231,410]
 gi|293562992|ref|ZP_06677459.1| chromosome segregation protein SMC [Enterococcus faecium E1162]
 gi|294621997|ref|ZP_06701141.1| chromosome segregation protein SMC [Enterococcus faecium U0317]
 gi|257817069|gb|EEV44397.1| chromosome partition protein SMC [Enterococcus faecium 1,231,502]
 gi|257826989|gb|EEV53615.1| chromosome partition protein SMC [Enterococcus faecium 1,231,410]
 gi|291598424|gb|EFF29497.1| chromosome segregation protein SMC [Enterococcus faecium U0317]
 gi|291605118|gb|EFF34585.1| chromosome segregation protein SMC [Enterococcus faecium E1162]
          Length = 1193

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|193076576|gb|ABO11235.2| putative chromosome segregation ATPase [Acinetobacter baumannii
           ATCC 17978]
          Length = 1149

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   RIF   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192
             + +   +     R+ D    ++ + + L      +    ++E+Q+           AE
Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             V++       +N L         + +     L  T  L  +  Q    L++E+ + 
Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296


>gi|330813674|ref|YP_004357913.1| chromosome partition protein smc [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486769|gb|AEA81174.1| chromosome partition protein smc [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 881

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 24/164 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K K L +  F+++A      F+   T  VG NG GK+NI+EA+ +    +  +  R + 
Sbjct: 1   MKFKQLEVVGFKSFADKTSFYFEDGLTGIVGPNGCGKSNIVEALRWCMGETSAKSLRGSG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGL------ADISIKLETRDDRSVRCLQINDVV 109
             DV   G     S +      ++E    L       +I ++ +   D+  +   +N   
Sbjct: 61  MEDVIFSGTTSRPSKNLSEVALKLENDNRLPQFKDMPEIEVRRKIEKDKGSKYF-LNGRE 119

Query: 110 IRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
           +R  D   L   L      PSM        + +    +RR  L+
Sbjct: 120 VRAKDVQILFADLSTGPHSPSMVSQGRVGSLVTAKPTDRRAILE 163


>gi|302348755|ref|YP_003816393.1| DNA double-strand break repair rad50 ATPase [Acidilobus
           saccharovorans 345-15]
 gi|302329167|gb|ADL19362.1| DNA double-strand break repair rad50 ATPase [Acidilobus
           saccharovorans 345-15]
          Length = 912

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L + +F ++   ++         VG NG GKT++ EAI +     G+R    +++ R
Sbjct: 5   ISKLTLKDFLSHKDTKIELPRGSIAIVGQNGAGKTSMFEAIYYALTTNGWRG-KLSNLVR 63

Query: 67  IGSPSFFSTFARVE---GMEGLADISIKLETRDD-RSVRCLQINDVVIRV-VDELNKHLR 121
            G           +   G E  A  SI+   +D   S   L ++  ++     +  + + 
Sbjct: 64  TGISKAAVELVLKDIDSGSEVKAIASIEKRRQDSATSGYRLTVDGKLVASTASDYREEMA 123

Query: 122 ISW 124
              
Sbjct: 124 KVL 126



 Score = 39.9 bits (92), Expect = 0.62,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 24/168 (14%)

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           + AQ+A +  +I  A+ E   A       Y ++++       L   L     ++   L+ 
Sbjct: 714 LSAQLASVSSRIEQAKKEADKA-------YEEEQSLSKALDKLDAALGAV--EALERLER 764

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDL------------IVDYCDKAITIAHGSTGEQK 293
              ++     + +      + G   + +            +VD   +   IA  S GEQ 
Sbjct: 765 TLYRRALVSLENEMNEIFRVFGLDYARVEVKETEDAFYFVVVDRQGRERPIASLSGGEQI 824

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
           V+ +   LA  R++ +  G    LLLDE +  LD+++R AL  ++  +
Sbjct: 825 VIALAYVLALNRMMHSNIG---FLLLDEPTDMLDDERRRALVDVLGKL 869


>gi|228922929|ref|ZP_04086223.1| DNA repair protein recN [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836700|gb|EEM82047.1| DNA repair protein recN [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 600

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 61/282 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 23  LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 78  YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
            D+E+L +     L          S  E QMA         R+++I      I +   K 
Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKL 229

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +    +L+        F++ + AL + Y     DG+ +D++ 
Sbjct: 230 D-EENELTEERLQISNFEKIYKALGDAYRSLSADGQGLDNVR 270


>gi|169797011|ref|YP_001714804.1| putative chromosome segregation ATPases [Acinetobacter baumannii
           AYE]
 gi|213156585|ref|YP_002318246.1| chromosome segregation protein SMC [Acinetobacter baumannii AB0057]
 gi|215484471|ref|YP_002326706.1| chromosome segregation protein SMC [Acinetobacter baumannii
           AB307-0294]
 gi|301347732|ref|ZP_07228473.1| chromosome segregation protein SMC [Acinetobacter baumannii AB056]
 gi|301512480|ref|ZP_07237717.1| chromosome segregation protein SMC [Acinetobacter baumannii AB058]
 gi|301594388|ref|ZP_07239396.1| chromosome segregation protein SMC [Acinetobacter baumannii AB059]
 gi|332852099|ref|ZP_08433926.1| segregation protein SMC [Acinetobacter baumannii 6013150]
 gi|332867497|ref|ZP_08437650.1| segregation protein SMC [Acinetobacter baumannii 6013113]
 gi|169149938|emb|CAM87832.1| putative chromosome segregation ATPases [Acinetobacter baumannii
           AYE]
 gi|213055745|gb|ACJ40647.1| chromosome segregation protein SMC [Acinetobacter baumannii AB0057]
 gi|213988534|gb|ACJ58833.1| chromosome segregation protein SMC [Acinetobacter baumannii
           AB307-0294]
 gi|332729471|gb|EGJ60810.1| segregation protein SMC [Acinetobacter baumannii 6013150]
 gi|332733914|gb|EGJ65059.1| segregation protein SMC [Acinetobacter baumannii 6013113]
          Length = 1149

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   RIF   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192
             + +   +     R+ D    ++ + + L      +    ++E+Q+           AE
Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             V++       +N L         + +     L  T  L  +  Q    L++E+ + 
Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296


>gi|163790809|ref|ZP_02185234.1| chromosome partition protein SMC [Carnobacterium sp. AT7]
 gi|159873877|gb|EDP67956.1| chromosome partition protein SMC [Carnobacterium sp. AT7]
          Length = 1190

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +++K ++I+ F+++A    + F    T  VG NG GK+NI EAI   L     R  R   
Sbjct: 1   MQLKRIDIAGFKSFADKTTIEFHDGVTAVVGPNGSGKSNITEAIRWVLGEQSARNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             D+   GS +  S   A V  +    D  + LE  +    R L  N  
Sbjct: 61  MNDIIFSGSDTRKSVNLAEVTLILENEDHFLPLEFSEISITRRLHRNGE 109


>gi|69246106|ref|ZP_00603812.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge
           [Enterococcus faecium DO]
 gi|258615163|ref|ZP_05712933.1| chromosome partition protein SMC [Enterococcus faecium DO]
 gi|68195401|gb|EAN09848.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge
           [Enterococcus faecium DO]
          Length = 1193

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|239501243|ref|ZP_04660553.1| chromosome segregation ATPase [Acinetobacter baumannii AB900]
          Length = 1149

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   RIF   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192
             + +   +     R+ D    ++ + + L      +    ++E+Q+           AE
Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             V++       +N L         + +     L  T  L  +  Q    L++E+ + 
Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296


>gi|260558339|ref|ZP_05830535.1| chromosome partition protein SMC [Enterococcus faecium C68]
 gi|260075513|gb|EEW63819.1| chromosome partition protein SMC [Enterococcus faecium C68]
          Length = 1193

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|237725014|ref|ZP_04555495.1| predicted protein [Bacteroides sp. D4]
 gi|229436752|gb|EEO46829.1| predicted protein [Bacteroides dorei 5_1_36/D4]
          Length = 722

 Score = 62.2 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          ++IK ++I  FR+Y   +    F    T+ +GDNG GKT   EA+ +L      R  
Sbjct: 1  MRIKSIDIKNFRSYYGENNHFEFSDGLTLILGDNGDGKTTFFEALEWLFDTTSERAN 57


>gi|325280472|ref|YP_004253014.1| hypothetical protein Odosp_1818 [Odoribacter splanchnicus DSM
          20712]
 gi|324312281|gb|ADY32834.1| hypothetical protein Odosp_1818 [Odoribacter splanchnicus DSM
          20712]
          Length = 535

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA---QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
          ++IK + +  F+ +  L +       +  + VG NG GKT+I EA +     RGFR  S 
Sbjct: 1  MRIKEIKLRHFKRFTDLTICGIPETAKLVVLVGPNGCGKTSIFEAFNHWYRYRGFRHGSD 60


>gi|313227430|emb|CBY22577.1| unnamed protein product [Oikopleura dioica]
          Length = 1237

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 95/265 (35%), Gaps = 44/265 (16%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +++L I +F++Y   +++    + T  +G NG GK+N+++AISF+   +    R +  + 
Sbjct: 4   LEYLEIEDFKSYKGKIKVGPFHKFTAIIGPNGSGKSNLMDAISFVLGEKSSNMRVSRVSQ 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
           +   G+P        +  S   ++E  EG  + SI+       +     I+D  +   D 
Sbjct: 64  LI-HGAPVGEPVANTARVSALIKMENEEGHLE-SIEFMRVIKDNSTHFYIDDCSVSAADY 121

Query: 116 LNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERL- 165
            +K    +  + S + +               ER    + +  +          D+E+  
Sbjct: 122 RSKLETFNIFINSKNFLVYQGKVEEIAMKNPKERMTMFEEISGS-----AEYKQDYEKAK 176

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPH 223
           +  R               + +A  A    K  I   R E    ++ +      +E    
Sbjct: 177 IEQR--------------DADDASKAAHIKKKGIAQERKEAREEVAQVHQYEKLQEELEE 222

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYA 248
            ++    F     D +    KE+  
Sbjct: 223 ARIQEKLFQLFIIDNNVTKYKEQLR 247


>gi|307296240|ref|ZP_07576067.1| chromosome segregation protein SMC [Sphingobium chlorophenolicum
           L-1]
 gi|306878042|gb|EFN09265.1| chromosome segregation protein SMC [Sphingobium chlorophenolicum
           L-1]
          Length = 1147

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 18/128 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++IK L +S F+++     L  +   T  VG NG GK+N+LEAI ++   S  +  R   
Sbjct: 1   MQIKRLKLSGFKSFVDPTELRIEPGLTGIVGPNGCGKSNLLEAIRWVMGESSAKSMRGGG 60

Query: 61  YADVTRIG-SPSFFSTFARV------------EGMEGLADISIKLETRDDRS-VRCLQIN 106
             DV   G +      FA V              +E  AD  +++  R +R      + N
Sbjct: 61  MEDVIFAGTATRPQRDFAEVSLMTVQEQGELFNAVEVAADGELEVTRRIERGAGSAYRAN 120

Query: 107 DVVIRVVD 114
              +R  D
Sbjct: 121 GRDVRAKD 128



 Score = 36.8 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K   +   S GEQ +  V +           T  API +LDE+ A LD+        +
Sbjct: 1037 GKKLAALTLLSGGEQALTAVALIFGLF-----LTNPAPICVLDEVDAPLDDANVERFCDL 1091

Query: 338  VTDIGSQI 345
            +  +  Q 
Sbjct: 1092 LDAMVGQT 1099


>gi|300361932|ref|ZP_07058109.1| chromosome segregation protein Smc [Lactobacillus gasseri JV-V03]
 gi|300354551|gb|EFJ70422.1| chromosome segregation protein Smc [Lactobacillus gasseri JV-V03]
          Length = 1186

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 103/301 (34%), Gaps = 56/301 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + ++ L ++ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R  +
Sbjct: 1   MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116
             DV   GS        A VE +    D  +  + ++    R +  N     +++     
Sbjct: 61  MKDVIFAGSQMRAPMNHAEVELIFDNRDHQLASDEKEVIVTRKILRNGESDYLLNHHPVR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161
            K +R  ++   M             D I +    +RR   +    V     +    +  
Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRRGIFEEAAGVLHFKQQKETALKQ 180

Query: 162 FERL--------------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
            ++                     +  ++ L  E  F          Q+  LG++I    
Sbjct: 181 LDKTNANLIRINDLVKELEGRIEPLHEQSSLAKEYKFQKEQLDHKLKQL--LGLEI---- 234

Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                +L+    +  +K N     L     LD +  QS   L+E+  +      + D   
Sbjct: 235 ----ESLNEEKKDVAKKANANQEILD---KLDNEVKQSQADLEEKRKQSNKRHAEKDEKQ 287

Query: 262 R 262
           +
Sbjct: 288 Q 288


>gi|260550984|ref|ZP_05825189.1| chromosome segregation protein SMC [Acinetobacter sp. RUH2624]
 gi|260405932|gb|EEW99419.1| chromosome segregation protein SMC [Acinetobacter sp. RUH2624]
          Length = 1149

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   RIF   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192
             + +   +     R+ D    ++ + + L      +    ++E+Q+           AE
Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             V++       +N L         + +     L  T  L  +  Q    L++E+ + 
Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296


>gi|184157076|ref|YP_001845415.1| chromosome segregation ATPase [Acinetobacter baumannii ACICU]
 gi|332872652|ref|ZP_08440620.1| segregation protein SMC [Acinetobacter baumannii 6014059]
 gi|183208670|gb|ACC56068.1| Chromosome segregation ATPase [Acinetobacter baumannii ACICU]
 gi|323516842|gb|ADX91223.1| chromosome segregation ATPase [Acinetobacter baumannii TCDC-AB0715]
 gi|332739181|gb|EGJ70040.1| segregation protein SMC [Acinetobacter baumannii 6014059]
          Length = 1149

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   RIF   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192
             + +   +     R+ D    ++ + + L      +    ++E+Q+           AE
Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             V++       +N L         + +     L  T  L  +  Q    L++E+ + 
Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296


>gi|84687366|ref|ZP_01015245.1| hypothetical protein 1099457000267_RB2654_22973 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84664663|gb|EAQ11148.1| hypothetical protein RB2654_22973 [Rhodobacterales bacterium
           HTCC2654]
          Length = 543

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 121/369 (32%), Gaps = 51/369 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+   I  +R      + F+ +  + VG+N  GK+ +LEAI     G+     +   +  
Sbjct: 14  IQRAVIRNYRCLKQANVTFNNELNVIVGNNESGKSTLLEAIHLALTGQ----LNGRPLQI 69

Query: 67  IGSPSFFSTFARVEGMEGLAD--------ISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
              P  F+    +E +E L +        I I++   DD ++  L+ N+  + +  +L  
Sbjct: 70  ELHPYLFNLDHVLEYIEALNNGQAPEPPSILIEVYLADDPALTKLKGNNNTLGI--DLPG 127

Query: 119 HLRISWLVP---SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
              +  L P       ++     E R       +               ++  R   L  
Sbjct: 128 VSLLIELNPAHAEDFALYVSDPSEIRTIPMEYYWIKWRDFAE-----NDILNSRAIPLHA 182

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARV---EMINALSSLIMEYVQKENFPHIKLSLTGFL 232
              D+S   +  A  +   + I    +   E ++   +  +   +    P +K       
Sbjct: 183 SLIDASTIKN-NAGASRYVINIVKESLTSKEKVDLALTYRLMKDRFLEEPKVKTINDTLA 241

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
             K   S   +            +   M       PH  D+ +    K         GEQ
Sbjct: 242 SKKGSISDKVISVSLDTSARANWEAGIM-------PHLDDIPLPLVGK---------GEQ 285

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGT 350
             V +   LA       T+  + I+L++E   HL     N L   +       QIF+T  
Sbjct: 286 NSVKI--KLA-----METSAKSHIILIEEAENHLSYASLNELIGHIATNAGSRQIFITTH 338

Query: 351 DKSVFDSLN 359
              V + L 
Sbjct: 339 SSFVLNKLG 347


>gi|218441332|ref|YP_002379661.1| chromosome segregation protein SMC [Cyanothece sp. PCC 7424]
 gi|218174060|gb|ACK72793.1| chromosome segregation protein SMC [Cyanothece sp. PCC 7424]
          Length = 1190

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/256 (20%), Positives = 95/256 (37%), Gaps = 44/256 (17%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + +S F+++  +  + F    T+  G NG GK+NIL+A+ F   L+  +G R   
Sbjct: 2   VHIKRVELSHFKSFGGTTSIPFLPGFTVISGPNGSGKSNILDALLFCLGLATSKGMRAER 61

Query: 61  YADVTRIG-------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------- 104
             D+           + +  S    +  + G  D +      +    R L+         
Sbjct: 62  LPDLVNHNHTNGRKTTEASVSVTFDLSDVSGEDDTNKTEPLTEWTITRRLRVTQGGNYSS 121

Query: 105 ---INDVVIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLDRMVFAID 152
              IN+     V+EL++ L    + P          + RI +  S ERR  +D +     
Sbjct: 122 TYYINNQPC-TVNELHEQLNRFRIYPEGYNVVLQGDVTRIITMNSRERREIIDELAG--- 177

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--VEMINALSS 210
                 + +F+R +      L         C  IE ++     ++   R   E    L +
Sbjct: 178 ------VAEFDRKIDKTKETLESVREREERCRIIEQELKRSLDRLASDRVKAEKYKKLKA 231

Query: 211 LIMEYVQKENFPHIKL 226
            I E  Q E    ++L
Sbjct: 232 EIQEKQQWEIVLQVRL 247


>gi|14488688|pdb|1II8|A Chain A, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
          Length = 195

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K++ + +  FR+++   + F     + +G NG GK+++L+AI
Sbjct: 1  MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43


>gi|329666213|pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
           Clamp In Dna Double-Strand Break Repair
 gi|329666214|pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
           Clamp In Dna Double-Strand Break Repair
          Length = 365

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/384 (14%), Positives = 133/384 (34%), Gaps = 57/384 (14%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           + L +  F    ++ + F +  T+  G NG GK+++ EAISF   G G R  +  D    
Sbjct: 4   ERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDYVNR 63

Query: 68  GS-PSFFSTFARVEGMEGLADISIK---LETRDDRSVRCLQINDVVIRVVD--------- 114
            +         + E      +I  +   L+ + +  +  +  N     +           
Sbjct: 64  NAVDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEV 123

Query: 115 ------ELNKHLRISWLV-PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
                 E    +R  +L    +D++      E    +  +  + +   +   +  E+  +
Sbjct: 124 EKILGIEHRTFIRTVFLPQGEIDKLLISPPSEITEIISDVFQSKETLEKLEKLLKEKXKK 183

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
             N + + G   +    S+E ++ E   + N      ++ L   + +          K +
Sbjct: 184 LENEISSGGAGGAG--GSLEKKLKEXSDEYNN-----LDLLRKYLFD----------KSN 226

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGR---KMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
            + +  G+  ++     + Y   L +GR     D               I+         
Sbjct: 227 FSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGG---------FIIKDWGIERPA 277

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--- 341
              S GE+ ++ + +  + A +    +G      +DE  + LD + +  +  ++ ++   
Sbjct: 278 RGLSGGERALISISLAXSLAEV---ASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL 334

Query: 342 -GSQIFMTGTDKSVFDSLNETAKF 364
               +F+T  D+   ++ +   + 
Sbjct: 335 NKVIVFITH-DREFSEAFDRKLRI 357


>gi|189346970|ref|YP_001943499.1| SMC domain protein [Chlorobium limicola DSM 245]
 gi|189341117|gb|ACD90520.1| SMC domain protein [Chlorobium limicola DSM 245]
          Length = 423

 Score = 61.8 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 29/58 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +KI+ L +  FR    L L F++  T+    NG GKT +++A++ L      R    +
Sbjct: 2  MKIRTLRLINFRGIEELSLPFESGLTVIAAVNGGGKTTVIDALAMLLSWLTARTRRDS 59


>gi|322506975|gb|ADX02429.1| Putative chromosome segregation ATPase [Acinetobacter baumannii
           1656-2]
          Length = 1149

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   RIF   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192
             + +   +     R+ D    ++ + + L      +    ++E+Q+           AE
Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             V++       +N L         + +     L  T  L  +  Q    L++E+ + 
Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296


>gi|67469325|ref|XP_650641.1| structural maintenance of chromosomes protein [Entamoeba
           histolytica HM-1:IMSS]
 gi|56467288|gb|EAL45255.1| structural maintenance of chromosomes protein [Entamoeba
           histolytica HM-1:IMSS]
          Length = 1023

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ + +  F  +  L L    Q    VG+NG GK+ IL A++     +     R    +D
Sbjct: 9   IERIELENFMCHKHLILDLSPQVNFIVGENGSGKSAILVALAICFGAKAQFTNRGKRASD 68

Query: 64  VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           + +IG        + R  G   L           +R  +  +      +V         I
Sbjct: 69  IIKIGENYCKIIVYLRNRGESSLNHDKYGDTVIIER--KITKEGGNTYKVSSLFIGEKPI 126

Query: 123 SW 124
             
Sbjct: 127 II 128


>gi|325265085|ref|ZP_08131812.1| putative RecF/RecN/SMC N domain protein [Clostridium sp. D5]
 gi|324029775|gb|EGB91063.1| putative RecF/RecN/SMC N domain protein [Clostridium sp. D5]
          Length = 1186

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 96/264 (36%), Gaps = 28/264 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ ++  F    T  VG NG GK+N+ +A+   L     +  R  +
Sbjct: 1   MYLKSIEVQGFKSFANKIKFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGT 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    +  +  T   +  R       IN    R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNSDHQLPVEYEEVTVTRKLYRSGESEYLINGAGCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+ +    
Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKNLS-VR 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           +L   R  L           S +E Q+  L  +  +AR E +     L    +       
Sbjct: 180 KLDEERQNLTRVN----DILSELEKQIGPLKRQSEVAR-EYLKKKEELKTYDINMFLLET 234

Query: 224 IKL-SLTGFLDGKFDQSFCALKEE 246
            ++      LD K+  +   L+E 
Sbjct: 235 ERIKEQIRELDSKYQIASDELEEA 258



 Score = 40.3 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 100/280 (35%), Gaps = 33/280 (11%)

Query: 86   ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            A+I  +++++  +     Q +   +   +EL+KH+        +D+    LS  R  + +
Sbjct: 883  AEIDAEIKSQVAKREELNQKHKEFLGKREELSKHM------SELDKECFRLSSRRESYEE 936

Query: 146  RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
                 I+       + +   M  RN  LT+  +      +++ ++ +LG     A  +  
Sbjct: 937  ASEKQINYMWDEYELTYNHAMELRNENLTDLSYMKRQIQALKGEIKKLGSVNVNAIDDYK 996

Query: 206  NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
            +          Q ++    + +L   +D          +E++A      ++ D + ++ L
Sbjct: 997  SVSERYEFLKGQHDDLVEAEATLMKIIDELDAAMRKQFEEQFA---LISKEFDIVFKQ-L 1052

Query: 266  IGPHRSDLI-----------VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISN 309
             G  +  L            +    +            S GE+ +  + +  A       
Sbjct: 1053 FGGGKGTLELMEDEDILEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA-----IQ 1107

Query: 310  TTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
                +P  LLDEI A LD++      + +  +   +Q  +
Sbjct: 1108 NLKPSPFCLLDEIEAALDDNNVVRFAQYLHKLTKNTQFIV 1147


>gi|257899382|ref|ZP_05679035.1| chromosome partition protein SMC [Enterococcus faecium Com15]
 gi|257837294|gb|EEV62368.1| chromosome partition protein SMC [Enterococcus faecium Com15]
          Length = 1193

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|254172927|ref|ZP_04879601.1| RecF/RecN/SMC N terminal domain, putative [Thermococcus sp. AM4]
 gi|214033083|gb|EEB73911.1| RecF/RecN/SMC N terminal domain, putative [Thermococcus sp. AM4]
          Length = 429

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +++K L +  F++     +  + +  + +G N  GKTN++E    L
Sbjct: 1  MRLKKLVVKNFKSLRDCEIELN-KFNVLIGPNASGKTNLVEVFKLL 45


>gi|295706310|ref|YP_003599385.1| chromosome segregation protein SMC [Bacillus megaterium DSM 319]
 gi|294803969|gb|ADF41035.1| chromosome segregation protein SMC [Bacillus megaterium DSM 319]
          Length = 1186

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 110/283 (38%), Gaps = 43/283 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L+I+ F+++A  + + F    T  VG NG GK+NI +AI ++      +  R   
Sbjct: 1   MFLKRLDIAGFKSFAEKVSIDFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFSTFA-----RVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS S  +         +E  +    +    + +  R  RS      IN+   R
Sbjct: 61  MEDIIFAGSESRRAVNVADVTLTLENDDQFLPLDYHEVSITRRVYRSGDSEFFINNQPCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
            + ++      S L      I S           S ERR+  +             ++ +
Sbjct: 121 -LKDIVDLFMDSGLGREAFSIISQGKVEEVLSSKSDERRKIFEE---------AAGVLKY 170

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENF 221
           +   R R   L       +    ++  + E+  ++     E +   SS+  +Y+Q KE  
Sbjct: 171 KT--RKRKAELRLLETQENLNRVVDI-LHEIEGQL-----EPLQIQSSIAKDYLQKKEEL 222

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYA--KKLFDGRKMDSMSR 262
            HI +++T F      Q +  LK E A  ++L +    +  +R
Sbjct: 223 EHIDVAVTVFEVEDLHQKWGKLKAEMAQHEQLEESLATNIRTR 265


>gi|293570731|ref|ZP_06681781.1| chromosome segregation protein SMC [Enterococcus faecium E980]
 gi|291609203|gb|EFF38475.1| chromosome segregation protein SMC [Enterococcus faecium E980]
          Length = 1193

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|227872402|ref|ZP_03990749.1| possible SMC structural maintenance of chromosomes partitioning
           protein [Oribacterium sinus F0268]
 gi|227841762|gb|EEJ52045.1| possible SMC structural maintenance of chromosomes partitioning
           protein [Oribacterium sinus F0268]
          Length = 1087

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/291 (19%), Positives = 105/291 (36%), Gaps = 36/291 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60
           + +K + I  F+++A+   L F    T  VG NG GK+NI +A+ ++      +  R  S
Sbjct: 1   MYLKSIEIQGFKSFANKTVLDFSPGITGIVGPNGSGKSNISDAVRWVLGEQKVKQLRGNS 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADI-------SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       +A V      AD         I +  R  RS     ++ND   R
Sbjct: 61  MQDVIFSGTALRRAQGYAYVSMCFDNADHALNLPYEEITVSRRLYRSGESEYRLNDAECR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG + ERR   D  V  +  + R+ +    
Sbjct: 121 LKDIHELFYDTGIGKEGYSLIGQGQIDKILSGKAEERRALFDEAVGIVKFKRRKDISQ-- 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL------GVKINIARVEMI----NALSSLIM 213
           + +      +          S +E Q+A L             R +++    N     + 
Sbjct: 179 KKLEEEQANMERIQ---DILSELEKQLAPLERQSGKAKNYLQLRDKLLLYEANLFLLEMK 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
           E  +       K+    +   + ++    L + +     +G  +++  +R 
Sbjct: 236 EAEKGLEELAEKIENLSYYQKEEEEKQNRLTQAFLAMEREGDALEAEEQRI 286


>gi|320537846|ref|ZP_08037762.1| hypothetical protein HMPREF9554_02516 [Treponema phagedenis
          F0421]
 gi|320145303|gb|EFW37003.1| hypothetical protein HMPREF9554_02516 [Treponema phagedenis
          F0421]
          Length = 536

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + IK + I  F+ +    L  + +  + VG+N  GK+ ILEAI+    G
Sbjct: 1  MTIKKIKIFNFKCFKEFTLELNPEFNVLVGNNEAGKSTILEAINLALTG 49


>gi|268325372|emb|CBH38960.1| hypothetical protein BSM_24370 [uncultured archaeon]
          Length = 74

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + +K L +  +R Y ++ +         +G NGVGKT  +E+I ++  G      +  ++
Sbjct: 1  MLLKTLTLRNYRKYKNVNVEIPDGVIGIIGLNGVGKTTFIESIGWVLFGH-HAARTTKEL 59

Query: 65 TRIGSPSF 72
           +    S 
Sbjct: 60 IKREGASH 67


>gi|262276826|ref|ZP_06054619.1| chromosome segregation protein SMC [alpha proteobacterium HIMB114]
 gi|262223929|gb|EEY74388.1| chromosome segregation protein SMC [alpha proteobacterium HIMB114]
          Length = 809

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 24/164 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K K + +S F+++A      F+   T  VG NG GK+N++EA+ +    +  +  R + 
Sbjct: 1   MKFKEIEVSGFKSFADKTNFYFEKGLTGIVGPNGCGKSNVVEALRWAMGETSAKSLRGSG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGME------GLADISIKLETRDDRSVRCLQINDVV 109
             DV   G     S +      ++E  +      G+ +I IK +   D+  +   IN   
Sbjct: 61  MEDVIFNGTSNRPSKNICEVSIKLENNDDVAQFKGIPEIEIKRKLEKDKGSK-YYINGKE 119

Query: 110 IRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
           +R  D   +   L      PSM        + +    +RR  L+
Sbjct: 120 VRAKDVQIVFADLSTGPHSPSMVSQGRVGALITAKPTDRRAILE 163


>gi|12860408|dbj|BAB31946.1| unnamed protein product [Mus musculus]
          Length = 284

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 98/280 (35%), Gaps = 34/280 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +      +M  ++  +  +
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE--YQKVMREIEHLSRLY 234

Query: 224 IKLSLTGFLDGKFDQSFCALKE------EYAKKLFDGRKM 257
           I        D K ++S   LKE         + L +  K 
Sbjct: 235 IAYQFLRAEDTK-ERSAGELKEMQDKIVNLQEVLSENEKK 273


>gi|254172444|ref|ZP_04879119.1| DNA double-strand break repair Rad50 ATPase [Thermococcus sp. AM4]
 gi|214033373|gb|EEB74200.1| DNA double-strand break repair Rad50 ATPase [Thermococcus sp. AM4]
          Length = 885

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 101/279 (36%), Gaps = 43/279 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + I  FR +    + F     + +G NG GK++ILEAI                 
Sbjct: 1   MRVRKIEIRNFRAHRKSVVEFSDGINLIIGQNGAGKSSILEAIFASLYL----------- 49

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIRVVD 114
              G PSF   + +     G  ++S+ LE          TR  +    L+   ++     
Sbjct: 50  ---GHPSFPKGYLKANARVGTGELSLSLEFEHNGKTYRITRTTKKSELLENGRLIAEKSS 106

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA---IDPRHRRRMI--DFERLMRGR 169
           ++ + +  +       +I++     R+  ++ ++     ++   R+ +   D+E   R  
Sbjct: 107 DIARWVERNVYP---LQIYTNALYIRQGEIEGIITNREVMEKVLRKVLGIEDYENAERNS 163

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL--IMEYVQKENFPHIKLS 227
             ++ E          +  + AE+   +  A       L  +  + +  ++ +    KLS
Sbjct: 164 ADVIRELKRRKENLKRLIERKAEIEENLRDAEKRFAETLRKISELRKRERELSAEVEKLS 223

Query: 228 LTGFLDGKFDQSFCALKEEYA---------KKLFDGRKM 257
                  +  +   +L++  A         +KL   R+ 
Sbjct: 224 KLYQEMKERKELITSLEKRIALLEKSLASEEKLLREREK 262



 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 85/216 (39%), Gaps = 25/216 (11%)

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKI---------NIARVEMINALSSLIMEYVQK 218
            ++R+L     +     S+  ++A L  ++             +E++    S I  + +K
Sbjct: 669 EKSRVLERARAEREGAESLRDEIARLIDELKANLWEIEKAEKELELVEKALSDITAFREK 728

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR-TLIGPHRSDLIVDY 277
                 +  L G       +    L  E   ++ +G+      RR    G  R +L V Y
Sbjct: 729 IARLKAEEELRGL------EEVQKLAGELFSEMTEGKYQGIRLRREKKYGKERIELKVLY 782

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
               + I   S GE+  + +   LA +       G   +L+LDE +  LDE++R  L  I
Sbjct: 783 AGNEVGIDFLSGGERIALGLAFRLALSLY---KVGNLELLILDEPTPFLDEERRKKLVEI 839

Query: 338 VTD---IGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
           ++       Q+ +   D+ + D+ +     +R++N 
Sbjct: 840 ISSQLRKIPQVIIVSHDEELKDAAD---YVIRVTNA 872


>gi|118442990|ref|YP_878289.1| chromosome segregation protein SMC [Clostridium novyi NT]
 gi|118133446|gb|ABK60490.1| chromosome segregation protein SMC [Clostridium novyi NT]
          Length = 1185

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L I  F+++A    LVF    T  VG NG GK+NIL+A+ ++   +     R   
Sbjct: 1   MFLKSLEIRGFKSFADKTELVFKKGITAIVGPNGSGKSNILDAVKWVLGEQSVKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+              ++  +    I    + +  R  RS      IN    R
Sbjct: 61  MQDVIFSGTEYRKPVGLSQVTLVLDNSDEELPIDYSEVTIMRRLFRSGESEYYINGTKCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          ++ + SG   ERR  L+
Sbjct: 121 LKDIQELFMDTGIGKEGYSIIGQGKIEALLSGKPEERRSLLE 162


>gi|291550078|emb|CBL26340.1| condensin subunit Smc [Ruminococcus torques L2-14]
          Length = 1186

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 81/214 (37%), Gaps = 33/214 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ ++  F    T  VG NG GK+N+ +A+   L     +  R  +
Sbjct: 1   MYLKSIEVQGFKSFANKIKFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGT 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    +  +  T   +  R       IN    R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNSDHKLPVEYEEVTVTRKLYRSGESEYLINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D             ++ ++
Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDE---------AAGIVKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
           R    ++  L +   +    + +   +AEL  +I
Sbjct: 172 R---RKSLSLKKLEDERQNLTRVNDILAELEKQI 202


>gi|323701144|ref|ZP_08112819.1| ATPase-like protein, involved in DNA repair [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533746|gb|EGB23610.1| ATPase-like protein, involved in DNA repair [Desulfotomaculum
           nigrificans DSM 574]
          Length = 416

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 87/263 (33%), Gaps = 26/263 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RR 58
           +KIK L +  FRN+ +  L  D Q   FVG N  GKT +L A+ +   G         R 
Sbjct: 1   MKIKKLGVQNFRNHEATELELD-QVNFFVGHNNAGKTTLLAALEWALTGHCLWTDRAGRG 59

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV---DE 115
           +  A++   G     +    VEG+  +      L +    S+R  ++     +       
Sbjct: 60  S--AELICRGQKQA-AVSLEVEGLGSI------LRSMPPNSLRVGKLTGQEAQASILNSL 110

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
                R+   + +   +      E+R FL     +         ++  + +         
Sbjct: 111 RTDEERLQIALNASAFLVM-PPSEQRAFLFGAFGLACTAETVAEKLAAWLKATGHSEEKA 169

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
           T     +              +++   R      L   +    Q+      +LS    L+
Sbjct: 170 TALAGQAKGYYPANLTGGSEVLEVMEKRA---KDLRKELKRDKQRTEAALAELSDGALLE 226

Query: 234 GKFDQSFCALKEEYAKKLFDGRK 256
              D+    LK + A+ L   R+
Sbjct: 227 TPADEQVEELKGQLAQ-LRQHRE 248


>gi|229152047|ref|ZP_04280242.1| Chromosome partition protein smc [Bacillus cereus m1550]
 gi|228631396|gb|EEK88030.1| Chromosome partition protein smc [Bacillus cereus m1550]
          Length = 1189

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +  +         +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           KL   R+   +     T        LIV+  +KA
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|323488933|ref|ZP_08094170.1| DNA repair protein recN (recombination protein N) [Planococcus
           donghaensis MPA1U2]
 gi|323397325|gb|EGA90134.1| DNA repair protein recN (recombination protein N) [Planococcus
           donghaensis MPA1U2]
          Length = 565

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 81/253 (32%), Gaps = 47/253 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I  F    +L + F    T+  G+ G GK+ I++A+  L+ GRG       +  R
Sbjct: 2   LRELDIRNFAIIDALTVSFAEGLTVLTGETGAGKSIIIDAVHLLAGGRG-----SQEFIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETR-------------------DDRSVRCLQIND 107
            G+       A +EG+  L D    +  +                   +D+     +IN 
Sbjct: 57  HGAKK-----AEIEGLFSLEDEQHPVFRKLDEFGITKSDGDILLRRELNDKGKNVCRING 111

Query: 108 VVI---------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
            ++           + +++       L+     ++        +F  + +      +   
Sbjct: 112 KLVTISILREVGASLIDIHGQHETQELMDEKQHLYLLD-----QFAGKSLAKSKESYSHT 166

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM--AELGVKINIARVEMI--NALSSLIME 214
              + +L R  +         +     +  Q+   E    +     E++          +
Sbjct: 167 FDKYTKLKREFSSYTENEQQIAQRIDLLTFQLQEIEAAELVIGEEEELVLERKKMQNFNK 226

Query: 215 YVQKENFPHIKLS 227
             +  +  H  + 
Sbjct: 227 IYESISAAHEAIQ 239


>gi|193785557|dbj|BAG50923.1| unnamed protein product [Homo sapiens]
          Length = 1197

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|306829618|ref|ZP_07462808.1| cell division protein Smc [Streptococcus mitis ATCC 6249]
 gi|304428704|gb|EFM31794.1| cell division protein Smc [Streptococcus mitis ATCC 6249]
          Length = 1179

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 26/219 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   IK+E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNEDGFIKDAGQVIKVERHIYRSGDSEYRIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
             ++     L            ++ Q+  L  +   AR 
Sbjct: 179 SKLQQTQDNLDRL---EDIIYELDNQIKPLAKQAENARK 214


>gi|229071346|ref|ZP_04204569.1| Chromosome partition protein smc [Bacillus cereus F65185]
 gi|229081103|ref|ZP_04213613.1| Chromosome partition protein smc [Bacillus cereus Rock4-2]
 gi|228702147|gb|EEL54623.1| Chromosome partition protein smc [Bacillus cereus Rock4-2]
 gi|228711800|gb|EEL63752.1| Chromosome partition protein smc [Bacillus cereus F65185]
          Length = 1189

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +  +         +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           KL   R+   +     T        LIV+  +KA
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|219518159|gb|AAI44164.1| SMC2 protein [Homo sapiens]
          Length = 1197

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFFSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|218233136|ref|YP_002368649.1| chromosome segregation SMC protein [Bacillus cereus B4264]
 gi|218161093|gb|ACK61085.1| chromosome segregation SMC protein [Bacillus cereus B4264]
          Length = 1189

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +  +         +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           KL   R+   +     T        LIV+  +KA
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|158711736|ref|NP_001102136.2| structural maintenance of chromosomes protein 2 [Rattus norvegicus]
          Length = 1191

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 97/270 (35%), Gaps = 30/270 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLF 252
           + ++    L +   ++S   LKE   K L 
Sbjct: 233 LYIAYQFLLAEDTKERSAGELKEMQDKILK 262


>gi|3851584|gb|AAC72360.1| chromosome-associated protein-E [Homo sapiens]
          Length = 1197

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|228960064|ref|ZP_04121728.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228799580|gb|EEM46533.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 1189

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +  +         +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           KL   R+   +     T        LIV+  +KA
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|229173819|ref|ZP_04301359.1| hypothetical protein bcere0006_29170 [Bacillus cereus MM3]
 gi|228609669|gb|EEK66951.1| hypothetical protein bcere0006_29170 [Bacillus cereus MM3]
          Length = 592

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 127/362 (35%), Gaps = 49/362 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+++ I  FRN+ +  + F  Q T+ +G N +GKTN++ A+  L      R  S  D+
Sbjct: 1   MKIEWIKIKGFRNFDNETINFAEQ-TLIIGANDIGKTNLIYALRLLFD----RSLSDRDL 55

Query: 65  TRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNK 118
             + S         S    V+ ++   D  I +   D       +Q  +        L+ 
Sbjct: 56  DLLSSDYNVYTKADSIEITVKLVDVKEDCLITVFKGDLNEGTVYIQYKNSKNGEYSILSG 115

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
                   PS + +    S    + L+      +      +  F +  R +N++L +   
Sbjct: 116 --------PSEEAVEIKNSRFYIKRLNMEYVNTNR----NLESFMK--REKNQILEDAKL 161

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
             +   +   QM E  +      +E++N     +    Q  +  + +L      +   + 
Sbjct: 162 KLTEQQT---QMDEQSIFKIKRGLEVVNKRVDRLNYIQQSLSKVNEELGSLAIHNESQEL 218

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           SF     + A+ L                    +L + Y  +   +  G  G    + + 
Sbjct: 219 SFKNANSDAARML-------------------DNLELTYSTQEGALTLGGDGRNNQIFLA 259

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGTDKSVFDS 357
            +++  + I +         ++E  AHL   ++  L   ++     Q+F+T     +   
Sbjct: 260 TWISKQKNIKSLEKVT-FYAIEEPEAHLHPQQQRKLSSYLLEKFDEQVFITTHSPHIASE 318

Query: 358 LN 359
             
Sbjct: 319 FK 320


>gi|158258635|dbj|BAF85288.1| unnamed protein product [Homo sapiens]
          Length = 1197

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|114625950|ref|XP_001137286.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform
           8 [Pan troglodytes]
 gi|114625952|ref|XP_001137366.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform
           9 [Pan troglodytes]
 gi|114625954|ref|XP_001137448.1| PREDICTED: structural maintenance of chromosomes protein 2 isoform
           10 [Pan troglodytes]
          Length = 1197

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|110347418|ref|NP_006435.2| structural maintenance of chromosomes protein 2 [Homo sapiens]
 gi|110347420|ref|NP_001036015.1| structural maintenance of chromosomes protein 2 [Homo sapiens]
 gi|110347425|ref|NP_001036016.1| structural maintenance of chromosomes protein 2 [Homo sapiens]
 gi|215273886|sp|O95347|SMC2_HUMAN RecName: Full=Structural maintenance of chromosomes protein 2;
           Short=SMC protein 2; Short=SMC-2; AltName:
           Full=Chromosome-associated protein E; Short=hCAP-E;
           AltName: Full=XCAP-E homolog
 gi|42627769|tpe|CAD89875.1| TPA: SMC2 protein [Homo sapiens]
 gi|55957990|emb|CAI16866.1| structural maintenance of chromosomes 2 [Homo sapiens]
 gi|55958454|emb|CAI16923.1| structural maintenance of chromosomes 2 [Homo sapiens]
 gi|57997175|emb|CAI46187.1| hypothetical protein [Homo sapiens]
 gi|119579377|gb|EAW58973.1| SMC2 structural maintenance of chromosomes 2-like 1 (yeast),
           isoform CRA_a [Homo sapiens]
 gi|119579379|gb|EAW58975.1| SMC2 structural maintenance of chromosomes 2-like 1 (yeast),
           isoform CRA_a [Homo sapiens]
 gi|119579381|gb|EAW58977.1| SMC2 structural maintenance of chromosomes 2-like 1 (yeast),
           isoform CRA_a [Homo sapiens]
 gi|120659846|gb|AAI30386.1| Structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|229146419|ref|ZP_04274790.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST24]
 gi|228637052|gb|EEK93511.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST24]
          Length = 1189

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +  +         +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           KL   R+   +     T        LIV+  +KA
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|300777524|ref|ZP_07087382.1| SMC domain protein [Chryseobacterium gleum ATCC 35910]
 gi|300503034|gb|EFK34174.1| SMC domain protein [Chryseobacterium gleum ATCC 35910]
          Length = 692

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 38/93 (40%), Gaps = 8/93 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + I  + I+ FRN+ +  + F+    + +G N  GK+N++ A+S +        +    +
Sbjct: 1  MYISQIKITNFRNFENTTVDFNDGINVVIGHNNAGKSNLVSALSLVMD-----NSKSKRL 55

Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97
                 F+        +     +SI++  +  
Sbjct: 56 ---NIDDFYKLIPTAHLLTSPPKVSIEITIKKG 85


>gi|30021936|ref|NP_833567.1| chromosome partition protein smc [Bacillus cereus ATCC 14579]
 gi|229129124|ref|ZP_04258097.1| Chromosome partition protein smc [Bacillus cereus BDRD-Cer4]
 gi|29897492|gb|AAP10768.1| Chromosome partition protein smc [Bacillus cereus ATCC 14579]
 gi|228654361|gb|EEL10226.1| Chromosome partition protein smc [Bacillus cereus BDRD-Cer4]
          Length = 1189

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +  +         +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           KL   R+   +     T        LIV+  +KA
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|228922602|ref|ZP_04085902.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837031|gb|EEM82372.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 1189

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 107/334 (32%), Gaps = 59/334 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +  +         +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           KL   R+   +     T        LIV+  +KA
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|226951285|ref|ZP_03821749.1| possible RecF/RecN/SMC N domain protein [Acinetobacter sp. ATCC
           27244]
 gi|226837969|gb|EEH70352.1| possible RecF/RecN/SMC N domain protein [Acinetobacter sp. ATCC
           27244]
          Length = 351

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/397 (13%), Positives = 128/397 (32%), Gaps = 79/397 (19%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + IK L+I+ +R ++ L  + F     + VG+NG GKT I+ +   L   +    +  +S
Sbjct: 1   MYIKKLSITGYRCFSELFEINFRKGLNVIVGENGAGKTAIINSFRQLFIDTESGSYNVSS 60

Query: 61  Y------ADV----------TRIGSPSFFSTFARVEGMEGLADISIKLETRD----DRSV 100
                   +               +       A ++  + + ++ + LE  +     R  
Sbjct: 61  DDFNKPFKEASIAADSFKIKVEFDNLENAEPIAFLQWSDAVNNVILNLEVLNKELRGRFK 120

Query: 101 RCLQINDVVIRVVD-ELNKHLRISWLVP---SMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
           +     +      D EL   +   +L P   +  ++ +G                     
Sbjct: 121 KSFWGGNSKASQFDVELFDKIHCIYLPPLRDAESKLVNG--------------------- 159

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
            R     +L++       +    +     +E +  +    +   +   I   + LI +++
Sbjct: 160 -RQSRLSKLLKFIEADQLKACKKAETKHPLEEKFKDFNQSLIDDKDSSIKKANKLIADHL 218

Query: 217 QKENFPHIKLSLTGFLDGKF-DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
                  I  + +     +F +  F  + E      F         +   +  +     +
Sbjct: 219 ----LEAIGQNFSQSTHIQFVENEFSKIVENLRLIFFPKITTAEADQFRDLCQNS----L 270

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
            Y +              ++ +   LA   L    +    +LL++E  AHL    +  L 
Sbjct: 271 GYNN--------------LLYIASILAELTLTKEES-LYRLLLIEEPEAHLHPQLQVRLL 315

Query: 336 RIVT----DIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
             +     +   Q+ +T T  +V  S  +  K + ++
Sbjct: 316 DHLETVANEHNVQVIVT-THSTVLASSVKLDKIIHLT 351


>gi|303233285|ref|ZP_07319956.1| chromosome segregation protein SMC [Atopobium vaginae PB189-T1-4]
 gi|302480585|gb|EFL43674.1| chromosome segregation protein SMC [Atopobium vaginae PB189-T1-4]
          Length = 1203

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 21/178 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +  L +  F+++A    +VFD   ++ VG NG GK+NI +AI ++   +     R  +
Sbjct: 1   MYLASLTLKGFKSFADKTSIVFDPGLSVIVGPNGSGKSNISDAILWVLGEKSPKILRGQA 60

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   GS      +   V  +    D ++ ++ R+    R L         IN+   R
Sbjct: 61  MEDVIFAGSTKRSAVSMCEVCLVLNNDDHTLPIDFREVAITRRLYRSGENEYLINNSPAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
           + D         L K          +D I +    +RR+ ++        R R+++ +
Sbjct: 121 LRDIIDILHDSGLGKDTHSIISQGKLDAILASKPEDRRQLIEEAAGIAKHRRRKQLAE 178


>gi|307129197|ref|YP_003881213.1| hypothetical protein Dda3937_01331 [Dickeya dadantii 3937]
 gi|306526726|gb|ADM96656.1| hypothetical protein Dda3937_01331 [Dickeya dadantii 3937]
          Length = 393

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/386 (14%), Positives = 128/386 (33%), Gaps = 56/386 (14%)

Query: 3   NRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           + + IK + ++ F ++  ++  +   A   + VG NG GK+N+LEAI  L      R A 
Sbjct: 6   SDM-IKSIQLTNFLSFGASTQPIELKA-LNVIVGPNGSGKSNLLEAIELL------RNAP 57

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
              +          +    +G +G    ++     + +  + L+          E+ +  
Sbjct: 58  DK-LITPIRDGGGVSDWLWKGGQGKPTATLNAVFTNPKGPQSLR----YQLSFTEVAQRF 112

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +       +RI +    +            +P       +    +  +N+       D 
Sbjct: 113 EMV-----DERIENEHPAD---------GHPEPYFYYHFNNARPTLNVKNKKRALQLEDI 158

Query: 181 SWCSSIEAQ------------MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
               SI AQ            +A+   +I + R       +             H++ + 
Sbjct: 159 DLEKSILAQRRDPDQYPEITYLAQELARIRLYREWSFGRYTPPRQPQKADLPNDHLESTS 218

Query: 229 T--GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIA 285
           T  G +  +  +    +K+   K L      D +    +     +  +  +  +  I   
Sbjct: 219 TNLGLVLNRLRRDPL-VKQRLLKALQALY--DGIDDYDVQIEGGTVQVFFHEGRFTIPAT 275

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GS 343
             S G  + + +   L H           P++ L+E    L  D    L  ++ +    +
Sbjct: 276 RLSDGTLRYLCLLAVLCH-------PNPPPLICLEEPELGLHPDVLPTLGALLKEASNRT 328

Query: 344 QIFMTGTDKSVFDSLNETAKFMRISN 369
           Q+ +T     + D++++    + ++ 
Sbjct: 329 QLIVTTHSDVLVDAMSDQPDAVLVAE 354


>gi|260887877|ref|ZP_05899140.1| putative cell division protein Smc [Selenomonas sputigena ATCC
           35185]
 gi|330838742|ref|YP_004413322.1| chromosome segregation protein SMC [Selenomonas sputigena ATCC
           35185]
 gi|260862383|gb|EEX76883.1| putative cell division protein Smc [Selenomonas sputigena ATCC
           35185]
 gi|329746506|gb|AEB99862.1| chromosome segregation protein SMC [Selenomonas sputigena ATCC
           35185]
          Length = 1181

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 93/291 (31%), Gaps = 43/291 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++K L    F+++A  + + F A  T  VG NG GK+N+ +A+ ++      R  R + 
Sbjct: 1   MQLKRLEAYGFKSFADKIEIEFHAGVTAIVGPNGSGKSNVTDAVRWVLGEQNVRALRGSK 60

Query: 61  YADVTRIGSP-------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRV 112
             D+   GS        +  S F   EG   +    + +  R  RS      IN    R+
Sbjct: 61  AEDIIFTGSATRRAMGVAEVSLFFENEGDMPVDYREVVVTRRLFRSGESEFFINKSRCRL 120

Query: 113 VDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
            D         L +          +D I +    ERR + +         +R R  +  R
Sbjct: 121 KDISNLFADTGLGRDGMSVIGQNRIDEILNSKPEERRLYFEETAGITK--YRNRKRESMR 178

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-------RVEMINAL--------- 208
            +      L                +AE   K           R   +  L         
Sbjct: 179 KLEDMQGNLVRVSDIMQEIEGQLEPLAESAEKTRRHDDLQTVYRRCALTELFQREGQLKK 238

Query: 209 -----SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
                +  I     +      ++ L      + DQ+   L+E+  ++    
Sbjct: 239 ERADSAGKIEAMRDEALAAETQVRLLDVKKEELDQAILVLEEKLQEQAEKN 289


>gi|255100266|ref|ZP_05329243.1| chromosome partition protein [Clostridium difficile QCD-63q42]
          Length = 1184

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 35/269 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++     ++F    T  VG NG GK+NI +A+   L     +  R   
Sbjct: 1   MYLKRLELKGFKSFPVKTDIIFKEGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+      ++      ++  E   ++     T   R+ R       +N+   R
Sbjct: 61  LEDVIFAGTDTKKPMNYCEVALTIDNSENQLELDFTEVTIRRRAYRNGESEFFLNNKSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D I S   + RR+  D                ++
Sbjct: 121 LKDIKEVFLDTGIGKDGYSIIEQGKVDEILSNNPLSRRKVFDEACGISK-------YRYK 173

Query: 164 RLMRGRNRLLTE---GYFDSSWCSSIEAQMAELGVKIN--IARVEMINALSS-LIMEYVQ 217
           +    RN   T+      D  +    E Q+  L  +       +E+   L +  +  +++
Sbjct: 174 KQEAERNLSNTKENLERIDDVYIEI-ENQLKPLFNQQTKAKKYLEISEKLKTLEVNSFIR 232

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +      +LS         ++     +E+
Sbjct: 233 EIEGIEKELSEVNEHRNVIEKELNEKEEQ 261


>gi|322389959|ref|ZP_08063499.1| chromosome segregation protein SMC [Streptococcus parasanguinis
           ATCC 903]
 gi|321143395|gb|EFX38833.1| chromosome segregation protein SMC [Streptococcus parasanguinis
           ATCC 903]
          Length = 1178

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 30/276 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDKGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     +      ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYACVTVVLDNQDGFIQQAGKEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +    + R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--FKTRRKETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +      L            +E Q+  L  +  +AR      L       V   +   
Sbjct: 179 TKLNQTQENLDRL---EDILYELEGQIQPLEKQATVARR----FLELDQERQVLLLDVLV 231

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            ++ LT  L  K DQ   A++E+ A      + ++ 
Sbjct: 232 AQVDLTKDLYEKVDQEEKAIQEQLASYYQRRQILEE 267


>gi|14590782|ref|NP_142852.1| chromosome segregation protein [Pyrococcus horikoshii OT3]
 gi|18202079|sp|O58687|RAD50_PYRHO RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|3257342|dbj|BAA30025.1| 879aa long hypothetical purine NTPase [Pyrococcus horikoshii OT3]
          Length = 879

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 27/43 (62%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI+ + +  FR++ +  + F     + +G NG GK+++L+AI
Sbjct: 1  MKIERVIVQNFRSHKNSEIEFKPGINLIIGQNGAGKSSLLDAI 43



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           ++  L V Y      +   S GE+  + +   LA +  +    G   +L+LDE +  LDE
Sbjct: 771 NKVKLFVIYDGVERPLTFLSGGERIALGLAFRLAMSMYL---IGKVDLLILDEPTPFLDE 827

Query: 329 DKRNALFRIVT---DIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
           ++R  L  I+       SQ+ +   D+ + D+  +    +R+   
Sbjct: 828 ERRRKLIEIMERHLRKISQVIIVSHDEELKDA-ADHVIRIRLEGG 871


>gi|257885679|ref|ZP_05665332.1| chromosome partition protein SMC [Enterococcus faecium 1,231,501]
 gi|257821535|gb|EEV48665.1| chromosome partition protein SMC [Enterococcus faecium 1,231,501]
          Length = 1193

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 102/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVVDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|324991497|gb|EGC23430.1| cell division protein Smc [Streptococcus sanguinis SK353]
          Length = 1178

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            K+  A  E +  +   +  Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 EKLTQA-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQANLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|307314254|ref|ZP_07593862.1| SMC domain-containing protein [Escherichia coli W]
 gi|306906077|gb|EFN36596.1| SMC domain-containing protein [Escherichia coli W]
 gi|315062949|gb|ADT77276.1| hypothetical protein ECW_m3938 [Escherichia coli W]
 gi|323376458|gb|ADX48726.1| SMC domain-containing protein [Escherichia coli KO11]
          Length = 566

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 120/348 (34%), Gaps = 36/348 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L +  FRN+    + F++  T+ +G N VGK+N+L ++  L      +  S +++
Sbjct: 1   MEISSLKLKGFRNFKDAYINFNSN-TLIIGANDVGKSNMLHSLRMLLD----KSISDSEI 55

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                         +E      +  I +  ++      L I    +    +  +     +
Sbjct: 56  ------EPNELDFHLENGNSCEEFEIIIHFKNINEDAVLSILKGNV---SDSGESFIKYF 106

Query: 125 LVPSMD--RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
              S    ++F G S+E        +  I+ R+  + ++ + +   R  L      +   
Sbjct: 107 AQKSDLSYKLFIGDSLE-------SLQEINSRYYLKFVNLKYIQSQR-DLERFIRKEKRQ 158

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              I  Q   L          ++  +SS +     K +    +L        + +     
Sbjct: 159 LLKIAQQ--SLNSDEREEDDYLLGEISSDLQLINDKIS----QLIYVERATKEVNDELKK 212

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L   Y++       +   +    I     +L +        +  G  G    +L+ ++ A
Sbjct: 213 LAHHYSE-----YSVQLDTGAIGINDFIDNLQLGANTNGSNVMLGGDGRNNQILLALWKA 267

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTG 349
            +    +        +++E  AHL   ++  L   ++ ++  Q  ++ 
Sbjct: 268 KSIKEHDVDNEVIFYVIEEPEAHLHPHQQRKLADYLIAELPGQTIISS 315


>gi|163784336|ref|ZP_02179239.1| hypothetical protein HG1285_04758 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880397|gb|EDP73998.1| hypothetical protein HG1285_04758 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 666

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 106/283 (37%), Gaps = 37/283 (13%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASY 61
           I  +N+  F++Y    L +         VG NG GK+NI ++I F   L+  +  R    
Sbjct: 6   IDRINVYGFKSYGLRKLSIPIGDGFVGIVGPNGSGKSNIGDSIVFALGLATAKSMRALKL 65

Query: 62  ADVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVDE 115
           +D+      +    +      R EG   L +  + +  + + S +   +IN    +  + 
Sbjct: 66  SDLIFSSKGKSAEFAEVEVIFRNEGAFPLNNEEVSIYRKVEHSGKSTYKINGRPAKQYEV 125

Query: 116 --------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
                   + K          + +       ERR  +  +           + D+E    
Sbjct: 126 EELLTAAGIPKQGYNIVTQGDIFKFIKMTPSERRDLISEIAG---------ITDYE---E 173

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            + + L +        ++  A++    VK N+ R+E     +    E  +K  F   K+ 
Sbjct: 174 RKEKALKDLEETEEKLTA--AKLVLKEVKTNLKRLEEERENALKAKEIEEKIAFLEEKIK 231

Query: 228 --LTGFLDGKFDQSFCALK--EEYAKKLFDGRKMDSMSRRTLI 266
                FL  + +++   L+  E+  ++L++ +++    ++ LI
Sbjct: 232 GVKLYFLQNEEEKTVKDLEEVEQKIQELYNQKELSIQKQKELI 274


>gi|228902692|ref|ZP_04066839.1| DNA repair protein recN [Bacillus thuringiensis IBL 4222]
 gi|228856879|gb|EEN01392.1| DNA repair protein recN [Bacillus thuringiensis IBL 4222]
          Length = 583

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 116 KLVTLSILKEIGKSLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 213 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|228960442|ref|ZP_04122093.1| DNA repair protein recN [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229047870|ref|ZP_04193446.1| DNA repair protein recN [Bacillus cereus AH676]
 gi|229111649|ref|ZP_04241199.1| DNA repair protein recN [Bacillus cereus Rock1-15]
 gi|229146749|ref|ZP_04275114.1| DNA repair protein recN [Bacillus cereus BDRD-ST24]
 gi|228636577|gb|EEK93042.1| DNA repair protein recN [Bacillus cereus BDRD-ST24]
 gi|228671784|gb|EEL27078.1| DNA repair protein recN [Bacillus cereus Rock1-15]
 gi|228723327|gb|EEL74696.1| DNA repair protein recN [Bacillus cereus AH676]
 gi|228799206|gb|EEM46172.1| DNA repair protein recN [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 600

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 23  LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 78  YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270


>gi|229192386|ref|ZP_04319349.1| DNA repair protein recN [Bacillus cereus ATCC 10876]
 gi|228590963|gb|EEK48819.1| DNA repair protein recN [Bacillus cereus ATCC 10876]
          Length = 600

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 23  LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 78  YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270


>gi|229157773|ref|ZP_04285848.1| DNA repair protein recN [Bacillus cereus ATCC 4342]
 gi|228625730|gb|EEK82482.1| DNA repair protein recN [Bacillus cereus ATCC 4342]
          Length = 583

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ +    +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 213 DEENDLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|206971339|ref|ZP_03232290.1| DNA repair protein RecN [Bacillus cereus AH1134]
 gi|229071681|ref|ZP_04204897.1| DNA repair protein recN [Bacillus cereus F65185]
 gi|229081433|ref|ZP_04213933.1| DNA repair protein recN [Bacillus cereus Rock4-2]
 gi|229180454|ref|ZP_04307796.1| DNA repair protein recN [Bacillus cereus 172560W]
 gi|206734111|gb|EDZ51282.1| DNA repair protein RecN [Bacillus cereus AH1134]
 gi|228602878|gb|EEK60357.1| DNA repair protein recN [Bacillus cereus 172560W]
 gi|228701848|gb|EEL54334.1| DNA repair protein recN [Bacillus cereus Rock4-2]
 gi|228711412|gb|EEL63371.1| DNA repair protein recN [Bacillus cereus F65185]
          Length = 600

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 23  LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 78  YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270


>gi|75761081|ref|ZP_00741078.1| DNA repair protein recN [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74491423|gb|EAO54642.1| DNA repair protein recN [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 600

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 23  LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 78  YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 133 KLVTLSILKEIGKSLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270


>gi|228980860|ref|ZP_04141164.1| DNA repair protein recN [Bacillus thuringiensis Bt407]
 gi|228778796|gb|EEM27059.1| DNA repair protein recN [Bacillus thuringiensis Bt407]
          Length = 583

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 213 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|218899338|ref|YP_002447749.1| DNA repair protein RecN [Bacillus cereus G9842]
 gi|218543795|gb|ACK96189.1| DNA repair protein RecN [Bacillus cereus G9842]
          Length = 579

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 2   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 57  YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 112 KLVTLSILKEIGKSLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 167

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 209 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 249


>gi|28375557|emb|CAD66602.1| SMC protein [Pyrococcus furiosus]
          Length = 1177

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/253 (16%), Positives = 86/253 (33%), Gaps = 33/253 (13%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
           I+ L +  F++Y    + + F    T  VG NG GK+NI +AI F+  G      R +  
Sbjct: 4   IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 63

Query: 62  ADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-------VIRVV 113
           +D+   GS     + +A V       D    ++  +    R +  +              
Sbjct: 64  SDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATR 123

Query: 114 DELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
            E+   L  + + P    I              +ERR  +D +    +          E+
Sbjct: 124 SEILDILTAAMISPDGYNIVLQGDITKFIKMSPLERRLLIDDISGIAEYD-----SKKEK 178

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQKENFP 222
            +      L +   + +    +  ++ +   K+   R + +    L   + +        
Sbjct: 179 ALEE----LKQAEENLARVDLLIKEVKKQLDKLEKERNDALRYLDLKDKLEKAKVSLLLG 234

Query: 223 HIKLSLTGFLDGK 235
            IK+  T   +G+
Sbjct: 235 EIKILETQIKEGE 247



 Score = 36.0 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 278  CDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
              K +      S GE+ +  +    A           AP  L DEI AHLD+     +  
Sbjct: 1059 AGKDVKRIEAMSGGEKALTALAFVFA-----IQKFKPAPFYLFDEIDAHLDDANVKRVAD 1113

Query: 337  IVTD--IGSQIFM 347
            ++ +    SQ  +
Sbjct: 1114 LIKESSKESQFIV 1126


>gi|17933343|gb|AAL48252.1|AF451891_2 RecN [Lactobacillus plantarum subsp. plantarum]
          Length = 420

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 135/412 (32%), Gaps = 71/412 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I+ F     L + F+A  T+  G+ G GK+ I++A+  L+ GRG      A+  R
Sbjct: 2   LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SAEFIR 56

Query: 67  IGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIR-- 111
            G+                +     E     AD ++ L+    +S R   +IN +++   
Sbjct: 57  TGADKAVLQGMFILPADGVTAQLLDEAGIEHADNTVILQREITKSGRNTCRINGMLVNTT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-------RRRMIDFER 164
            + ++ + +           +      +    LD    A   +          R     R
Sbjct: 117 TLKQIGETIVDIHGQNEHQELMQ--PEKHLGLLDEFATAKIRKLKQRYQQQYDRYQQLNR 174

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +R +N    E          +  Q+ E+         E         ++  Q  N   +
Sbjct: 175 ELRQKNANEKEWAQR---LDMLNFQVDEIAAAQVKVGEEASLTAERDRLDNYQMINQA-L 230

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS------------- 271
           + S T    G+       +       L     +D       +    +             
Sbjct: 231 QQSYTLLAAGEETTGAVDMVGTAMNALEPIANLDPAFNEITVNVKNAFYGLQDAAGQISN 290

Query: 272 --DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD---EISAHL 326
             DL      +   I      EQ++ ++         +    G +   +LD   +I+A L
Sbjct: 291 QLDLQEFDEGRLDEI------EQRLDVLA-------QLKRKYGDSEQQILDYYQKIAAEL 337

Query: 327 -----DEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
                 E+    L + V D+  Q+  TG  +++ D     AK ++   HQ L
Sbjct: 338 SKMTDSEENSEDLAQRVADLKQQLLTTG--EALSDKRRAAAKVLQRQIHQEL 387


>gi|270290358|ref|ZP_06196583.1| chromosome segregation protein SMC [Pediococcus acidilactici 7_4]
 gi|270281139|gb|EFA26972.1| chromosome segregation protein SMC [Pediococcus acidilactici 7_4]
          Length = 1184

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 99/297 (33%), Gaps = 31/297 (10%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K++ + IS F+++A   ++ F    T  VG NG GK+NI+EAI ++   +  +  R   
Sbjct: 1   MKLRTIEISGFKSFADHTKIDFKDGITGIVGPNGSGKSNIIEAIRWVMGETSAKSLRGGK 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G+              F ++   ++       IS +L    +      ++N  
Sbjct: 61  MPDVIFSGTQKRKPLSRAAVSIVFDNSDHFLDSKFDEVMISRRLFRNGESQ---YELNHQ 117

Query: 109 VIRVVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             R+ D LN  +                ++ IF+    +RR  ++     ++  +++   
Sbjct: 118 ECRLKDILNLFIDTGLGRESLSVISQGKIEEIFNSKPEDRRAIIEEAAGVLE--YKQDKR 175

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
             E  +   +  L                + E    +    ++       L    + +  
Sbjct: 176 RAESELEKTSGYLERVNDLIVELQKQVEPLEEQAA-VAKDYLQQKKRFDRLEQTRLVRTI 234

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
             +  L      + +  Q+     E    +L   R      +       + DL  + 
Sbjct: 235 TRNSDLQKRWAKEAEVKQTEAHQLENKLNELVKQRDR-LKEQVNQQSKQKDDLQAEL 290


>gi|228954460|ref|ZP_04116485.1| DNA repair protein recN [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228805117|gb|EEM51711.1| DNA repair protein recN [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
          Length = 600

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 23  LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 78  YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270


>gi|229129454|ref|ZP_04258425.1| DNA repair protein recN [Bacillus cereus BDRD-Cer4]
 gi|229152376|ref|ZP_04280568.1| DNA repair protein recN [Bacillus cereus m1550]
 gi|228630984|gb|EEK87621.1| DNA repair protein recN [Bacillus cereus m1550]
 gi|228654059|gb|EEL09926.1| DNA repair protein recN [Bacillus cereus BDRD-Cer4]
          Length = 600

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 23  LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 78  YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270


>gi|255306206|ref|ZP_05350378.1| chromosome partition protein [Clostridium difficile ATCC 43255]
          Length = 1184

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 35/269 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++     ++F    T  VG NG GK+NI +A+   L     +  R   
Sbjct: 1   MYLKRLELKGFKSFPVKTDIIFKEGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+      ++      ++  E   ++     T   R+ R       +N+   R
Sbjct: 61  LEDVIFAGTDTKKPMNYCEVALTIDNSENQLELDFTEVTIRRRAYRNGESEFFLNNKSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D I S   + RR+  D                ++
Sbjct: 121 LKDIKEVFLDTGIGKDGYSIIEQGKVDEILSNNPLSRRKVFDEACGISK-------YRYK 173

Query: 164 RLMRGRNRLLTE---GYFDSSWCSSIEAQMAELGVKIN--IARVEMINALSS-LIMEYVQ 217
           +    RN   T+      D  +    E Q+  L  +       +E+   L +  +  +++
Sbjct: 174 KQEAERNLSNTKENLERIDDVYIEI-ENQLKPLFNQQTKAKKYLEISEKLKTLEVNSFIR 232

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +      +LS         ++     +E+
Sbjct: 233 EIEGIEKELSEVNEHRKVIEKELNEKEEQ 261


>gi|126698846|ref|YP_001087743.1| chromosome partition protein [Clostridium difficile 630]
 gi|115250283|emb|CAJ68105.1| Structural maintenance chromosome protein SMC [Clostridium
           difficile]
          Length = 1184

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 92/269 (34%), Gaps = 35/269 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++     ++F    T  VG NG GK+NI +A+   L     +  R   
Sbjct: 1   MYLKRLELKGFKSFPVKTDIIFKEGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+      ++      ++  E   ++     T   R+ R       +N+   R
Sbjct: 61  LEDVIFAGTDTKKPMNYCEVALTIDNSENQLELDFTEVTIRRRAYRNGESEFFLNNKSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D I S   + RR+  D                ++
Sbjct: 121 LKDIKEVFLDTGIGKDGYSIIEQGKVDEILSNNPLSRRKVFDEACGISK-------YRYK 173

Query: 164 RLMRGRNRLLTE---GYFDSSWCSSIEAQMAELGVKIN--IARVEMINALSS-LIMEYVQ 217
           +    RN   T+      D  +    E Q+  L  +       +E+   L +  +  +++
Sbjct: 174 KQEAERNLSNTKENLERIDDVYIEI-ENQLKPLFNQQTKAKKYLEISEKLKTLEVNSFIR 232

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +      +LS         ++     +E+
Sbjct: 233 EIEGIEKELSEVNEHRKVIEKELNEKEEQ 261


>gi|71032011|ref|XP_765647.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352604|gb|EAN33364.1| hypothetical protein TP01_0120 [Theileria parva]
          Length = 179

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI  + +  F N+A L         +  G NG GK+ I++AI+      G       ++ 
Sbjct: 35  KIIKVTLFNFLNHAHLTFSCSPYLNLIFGRNGQGKSAIVQAIALCFGATGHSVGRDTNLN 94

Query: 66  RIGSPSFFS 74
           R        
Sbjct: 95  RYIKDYHLK 103


>gi|47570401|ref|ZP_00241040.1| DNA repair protein RecN [Bacillus cereus G9241]
 gi|47552925|gb|EAL11337.1| DNA repair protein RecN [Bacillus cereus G9241]
          Length = 579

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 2   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 57  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 167

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ +    +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 209 DEENDLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 249


>gi|332358949|gb|EGJ36770.1| cell division protein Smc [Streptococcus sanguinis SK49]
          Length = 1178

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            K+  A  E +  +   +  Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 EKLIKA-EEDLTNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336


>gi|322385040|ref|ZP_08058690.1| cell division protein Smc [Streptococcus cristatus ATCC 51100]
 gi|321270950|gb|EFX53860.1| cell division protein Smc [Streptococcus cristatus ATCC 51100]
          Length = 1178

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 108/291 (37%), Gaps = 37/291 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +     A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTENRKPLNYASVVVVLDNQDQFIKQAGKEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGV---KINIARVE-MINALSSLIME- 214
             +      L       Y   S    +E Q AE      +++  R E  ++ L + I   
Sbjct: 179 SKLAQTQDNLDRLEDIIYELDSQVKPLEKQ-AETAKRFLELDQERQELYLDVLVAQIKAN 237

Query: 215 ----YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                  + +   IK  L  +   + +      + +  ++  + R  D  +
Sbjct: 238 KTDLTAAEADLESIKQELAAYYTKRDELERENQEIKVKRQEVNQRLSDDQA 288



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 65/197 (32%), Gaps = 26/197 (13%)

Query: 168  GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
             R R L       +    +E  +  LG       ++ +     +        +  +  LS
Sbjct: 953  QRARSLENLAAAEAQVKDLEKAIRALGPV----NLDAVEQFEEVSSRLNFLNSQRNDVLS 1008

Query: 228  LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-------- 279
                L    ++    +KE +       R+   ++   + G   +DLI+   D        
Sbjct: 1009 AKNLLLETIEEMNDEVKERFQTTFEAIRESFKLTFSQMFGGGSADLILTEGDLLTAGVEI 1068

Query: 280  -------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
                   K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE    
Sbjct: 1069 SVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEANVK 1123

Query: 333  ALFRIVT--DIGSQIFM 347
                 +   D  SQ  +
Sbjct: 1124 RFGDYLNRFDKESQFIV 1140


>gi|228941335|ref|ZP_04103887.1| DNA repair protein recN [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228974267|ref|ZP_04134836.1| DNA repair protein recN [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228785317|gb|EEM33327.1| DNA repair protein recN [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228818261|gb|EEM64334.1| DNA repair protein recN [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 600

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 23  LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 78  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270


>gi|218231559|ref|YP_002368977.1| DNA repair protein RecN [Bacillus cereus B4264]
 gi|218159516|gb|ACK59508.1| DNA repair protein RecN [Bacillus cereus B4264]
          Length = 579

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 2   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 57  YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 112 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 167

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 209 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 249


>gi|328848556|gb|EGF97764.1| hypothetical protein MELLADRAFT_84477 [Melampsora larici-populina
           98AG31]
          Length = 1233

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 101/300 (33%), Gaps = 42/300 (14%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------- 56
           + +  + I  F++Y  +  +      T  +G NG GK+N+++A S L     F       
Sbjct: 1   MPLHSIEIVNFKSYKGTQTIGPFKNFTAVIGPNGAGKSNLMDAQSHLLVRISFVLGVRSG 60

Query: 57  --RRASYADVTRIGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
             R     D+   G            +  +              S  +    ++S     
Sbjct: 61  QLRSTQLRDLIYKGGDREDENQAPKKAAVTAIYIDHKTGDQHRFSRTITVASEKSGSSAY 120

Query: 105 -INDVVIR---------VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-- 152
            IND V++           D L K          ++ + S       + +D++  ++D  
Sbjct: 121 SINDKVVKWEEYQSTLEQYDILVKAKNFLVFQGDVEAVASQNPNALSKLIDQISGSLDLA 180

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV--KINIARVEMINALSS 210
             + +R +      +  N  L +    +      + Q AE+    ++   R + I  L  
Sbjct: 181 AEYEKRRLAHIDASKQSNDQLIKRRVINGEIKDFKQQKAEMEEFDRLCEERDQEIIHLLL 240

Query: 211 L---IMEYVQKENFPHIKLSLTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
                +E+   +N   IKL   G  D      +FDQ     ++EY +   D  K +   +
Sbjct: 241 WKLFHIEHSINQNSEAIKLLNDGLADLQAESHEFDQHVTQARKEYTQATRDVIKAERSLK 300


>gi|331269657|ref|YP_004396149.1| chromosome segregation protein SMC [Clostridium botulinum
           BKT015925]
 gi|329126207|gb|AEB76152.1| chromosome segregation protein SMC [Clostridium botulinum
           BKT015925]
          Length = 1184

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L I  F+++A    LVF    T  VG NG GK+NIL+A+ ++   +     R   
Sbjct: 1   MFLKSLEIRGFKSFADKTELVFKKGITAIVGPNGSGKSNILDAVKWVLGEQSIKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+              ++  +G   I    + +  R  RS      IN+   R
Sbjct: 61  MQDVIFSGTEFRKPVGLAQVTLILDNSDGELPIEYSEVTIMRRLFRSGESEYYINNTKCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          ++ + SG   ERR  L+
Sbjct: 121 LKDIQELFMDTGIGKEGYSIIGQGKIEALLSGKPEERRSLLE 162



 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 60/185 (32%), Gaps = 32/185 (17%)

Query: 183  CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
                +  +A+LGV    A  +    +        QKE+    K  L   +    D+    
Sbjct: 977  IEIYKRDIAKLGVVNLGAIQQYKELMEKYTFMKEQKEDLIQAKEELLNVVKEMTDKMKTV 1036

Query: 243  LKEEYAKKLFDGRK---MDSMSRRTLIGPHRSDLIVDYCD---------------KAITI 284
              E +  KL +       +           ++DLI++  D               K   I
Sbjct: 1037 FHENF-NKLRENFSETFRELFKG------GKADLILESGDELTSNIEINVQPPGKKLQNI 1089

Query: 285  AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--G 342
               S GE+ +  + +  A  ++        P  +LDEI A LD+   +     +      
Sbjct: 1090 NLMSGGEKGLSAIALLFAILKM-----KPTPFCILDEIEAALDDSNVSRYSEFLRKFSSN 1144

Query: 343  SQIFM 347
            +Q  +
Sbjct: 1145 TQFII 1149


>gi|311029997|ref|ZP_07708087.1| chromosome segregation SMC protein [Bacillus sp. m3-13]
          Length = 1188

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K L +  F+++A  + + F    T  VG NG GK+NI++AI   L     +  R + 
Sbjct: 1  MYLKRLEVVGFKSFAEKISVDFVPGVTAVVGPNGSGKSNIIDAIRWVLGEQSAKSLRGSK 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFAGSDS 71


>gi|304384764|ref|ZP_07367110.1| cell division protein Smc [Pediococcus acidilactici DSM 20284]
 gi|304328958|gb|EFL96178.1| cell division protein Smc [Pediococcus acidilactici DSM 20284]
          Length = 1184

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 99/297 (33%), Gaps = 31/297 (10%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K++ + IS F+++A   ++ F    T  VG NG GK+NI+EAI ++   +  +  R   
Sbjct: 1   MKLRTIEISGFKSFADHTKIDFKDGITGIVGPNGSGKSNIIEAIRWVMGETSAKSLRGGK 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G+              F ++   ++       IS +L    +      ++N  
Sbjct: 61  MPDVIFSGTQKRKPLSRAAVSIVFDNSDHFLDSKFDEVMISRRLFRNGESQ---YELNHQ 117

Query: 109 VIRVVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             R+ D LN  +                ++ IF+    +RR  ++     ++  +++   
Sbjct: 118 ECRLKDILNLFIDTGLGRESLSVISQGKIEEIFNSKPEDRRAIIEEAAGVLE--YKQDKR 175

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
             E  +   +  L                + E    +    ++       L    + +  
Sbjct: 176 RAESELEKTSGYLERVNDLIVELQKQVEPLEEQAA-VAKDYLQQKKRFDRLEQTRLVRTI 234

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
             +  L      + +  Q+     E    +L   R      +       + DL  + 
Sbjct: 235 TRNSDLQKRWAKEAEVKQTEAHQLENKLNELVKQRDR-LKEQVNQQSKQKDDLQAEL 290


>gi|301108950|ref|XP_002903556.1| structural maintenance of chromosomes protein, putative
           [Phytophthora infestans T30-4]
 gi|262097280|gb|EEY55332.1| structural maintenance of chromosomes protein, putative
           [Phytophthora infestans T30-4]
          Length = 251

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRASYA 62
           I+ +    F  +  LR+          G+NG GK+ I+ AI     G       R  +  
Sbjct: 79  IEEIYCENFMCHRKLRVTLSPHINFITGENGSGKSAIIAAIQIC-FGASARTTHRGKNIK 137

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDV 108
              R G          +   +G    + + +    + +  R ++ +  
Sbjct: 138 SFIRHGCDGNAFVRVTLRNDDGAGSDAFQADKYGKKIIVERLIRRDGS 185


>gi|228967215|ref|ZP_04128251.1| DNA repair protein recN [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792584|gb|EEM40150.1| DNA repair protein recN [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 583

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 116 KLVTLSVLKEIGKSLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 213 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|21228296|ref|NP_634218.1| chromosome segregation protein [Methanosarcina mazei Go1]
 gi|49036449|sp|Q8PUY4|RAD50_METMA RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|20906757|gb|AAM31890.1| DNA repair protein RAD50 [Methanosarcina mazei Go1]
          Length = 1070

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 87/268 (32%), Gaps = 34/268 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-----RGFRRA 59
           +K+K L I   R+Y  L   F+   T+  G NG GK+++LEA      G     + F   
Sbjct: 1   MKLKNLYIENIRSYKKLDFTFEDGVTVISGVNGSGKSSLLEACFMGLFGSKILSKDF--- 57

Query: 60  SYADVTRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCL--------QINDVVI 110
             AD+   G+ S          G E L + + +   + + +             I D   
Sbjct: 58  VLADMIFKGAESAKIHLGFEHLGREYLIEQAFRYSLKSENASNSRCVLFADGENIVDQAT 117

Query: 111 RVVDELNKHLRI---------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
           R  +E+   L +               +D + +    +R+R +D ++        R    
Sbjct: 118 RTYEEVCALLNMDEEAYRNCAYIRQGEIDVLINAKPRDRQRMIDDLLQLGKLEEYRERAG 177

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           + +    R   L     +S      E +  E    +       +N L   + E       
Sbjct: 178 YAKTAVRR---LERDAKNSFLGVKAEIEGIESTEPV-----AAVNRLRQKVKETDAILEE 229

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAK 249
            + K        G+ D      +E   +
Sbjct: 230 LNKKKEFAAARKGELDLRIAEYRERLQE 257


>gi|293365562|ref|ZP_06612271.1| cell division protein Smc [Streptococcus oralis ATCC 35037]
 gi|307703517|ref|ZP_07640459.1| chromosome segregation protein SMC [Streptococcus oralis ATCC
           35037]
 gi|291315930|gb|EFE56374.1| cell division protein Smc [Streptococcus oralis ATCC 35037]
 gi|307622924|gb|EFO01919.1| chromosome segregation protein SMC [Streptococcus oralis ATCC
           35037]
          Length = 1179

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 105/283 (37%), Gaps = 37/283 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   IK+E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNEDGFIKDAGQIIKVERHIYRSGDSEYRIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----------EMINALSSLIM 213
             ++     L            +  Q+  L  +   AR             ++ L + I 
Sbjct: 179 SKLQQTQDNLDRL---EDIIYELNNQIKPLAKQAENARKFLDLDGQRKTIYLDVLVAQIK 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           E   +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 236 ENKAELELTEEELTQVQELLTSYYQKREELEEE-NQTLKKKRQ 277


>gi|229047535|ref|ZP_04193125.1| Chromosome partition protein smc [Bacillus cereus AH676]
 gi|229111319|ref|ZP_04240872.1| Chromosome partition protein smc [Bacillus cereus Rock1-15]
 gi|228672095|gb|EEL27386.1| Chromosome partition protein smc [Bacillus cereus Rock1-15]
 gi|228723782|gb|EEL75137.1| Chromosome partition protein smc [Bacillus cereus AH676]
          Length = 1189

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 61/333 (18%), Positives = 106/333 (31%), Gaps = 59/333 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +  +         +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKNEEAKMSTNLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDK 280
           KL   R+   +     T        LIV+  +K
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEK 331


>gi|284052082|ref|ZP_06382292.1| SMC domain-containing protein [Arthrospira platensis str. Paraca]
 gi|78773867|gb|ABB51217.1| ATP-binding protein [Arthrospira platensis]
          Length = 402

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++I  L +S FR +      F     + VG NGVGK+++L+A+
Sbjct: 1  MQINQLKLSNFRGFEQAEFEFQPGMNLIVGINGVGKSSVLDAL 43


>gi|169841780|ref|ZP_02874889.1| chromosome segregation protein SMC [candidate division TM7
          single-cell isolate TM7a]
          Length = 55

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 10/63 (15%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          + +K L ++ F+++A+  +  FD+  T  VG NG GK+NIL+AI       GFRRA   +
Sbjct: 1  MYLKALELTGFKSFANKTVEEFDSGITSIVGPNGSGKSNILDAIC------GFRRA---E 51

Query: 64 VTR 66
          + +
Sbjct: 52 LIK 54


>gi|254435753|ref|ZP_05049260.1| hypothetical protein NOC27_2816 [Nitrosococcus oceani AFC27]
 gi|207088864|gb|EDZ66136.1| hypothetical protein NOC27_2816 [Nitrosococcus oceani AFC27]
          Length = 168

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI  L +  FR Y+++ + FD    + +G N VGK+ ILEA+   
Sbjct: 1  MKISSLTLKNFRAYSNVFVKFDDNFNVIIGRNDVGKSTILEALEIF 46


>gi|304558200|gb|ADM40864.1| hypothetical protein ETAF_0742 [Edwardsiella tarda FL6-60]
          Length = 708

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL 50
          + IK L+I  FRN+ S +L F  +     VG+N  GKTN+ EA+  +
Sbjct: 1  MYIKNLSIRNFRNFQSTKLNFKKECVNTIVGENSSGKTNVFEAMRLI 47


>gi|295091754|emb|CBK77861.1| condensin subunit Smc [Clostridium cf. saccharolyticum K10]
          Length = 1195

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 74/191 (38%), Gaps = 22/191 (11%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I  F+++A+  L  F    T  VG NG GK+N+ +A+ ++      +  R  +
Sbjct: 1   MYLKSIEIQGFKSFANKILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGT 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+       F      ++  +    IS    T   R  R      +IN    R
Sbjct: 61  MQDVIFSGTEIRKPQGFAYVAITLDNSDHRLPISYDQVTVSRRLYRSGESEYRINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +DRI SG   ERR   D     +  + RR++I   
Sbjct: 121 LKDIQELFYDTGIGKEGYSIIGQGQIDRILSGRPEERRELFDEAAGIVKFK-RRKLIAQR 179

Query: 164 RLMRGRNRLLT 174
           +LM     L+ 
Sbjct: 180 KLMDEEQNLVR 190


>gi|302392423|ref|YP_003828243.1| chromosome segregation protein SMC [Acetohalobium arabaticum DSM
           5501]
 gi|302204500|gb|ADL13178.1| chromosome segregation protein SMC [Acetohalobium arabaticum DSM
           5501]
          Length = 1188

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++   +++ F+   T  +G NG GK+NI +AI   L     +  R + 
Sbjct: 1   MHLKKIEMHGFKSFAEEVKVEFEPNITAVLGPNGSGKSNIADAIRWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS              ++   G   I    + L  R  RS +    IN+ V R
Sbjct: 61  MEDVIFAGSSQRKPMGIAEVTLTLDNSNGQLPIDYNEVTLGRRVTRSGKSEYLINNSVCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|47940530|gb|AAH71750.1| SMC2 protein [Homo sapiens]
          Length = 356

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|312868408|ref|ZP_07728608.1| chromosome segregation protein SMC [Streptococcus parasanguinis
           F0405]
 gi|311096153|gb|EFQ54397.1| chromosome segregation protein SMC [Streptococcus parasanguinis
           F0405]
          Length = 1178

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 30/276 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDKGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     +      ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYACVTVVLDNQDGFIQQAGKEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +    + R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--FKTRRKETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +      L            +E Q+  L  +  +AR      L       V   +   
Sbjct: 179 TKLNQTQENLDRL---EDILYELEGQIQPLEKQATVARR----FLELDQERQVLLLDVLV 231

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            ++ LT  L  K DQ   A++E+ A      + ++ 
Sbjct: 232 AQVDLTKDLYEKADQEEKAIQEQLASYYQRRQVLEE 267


>gi|289191877|ref|YP_003457818.1| SMC domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938327|gb|ADC69082.1| SMC domain protein [Methanocaldococcus sp. FS406-22]
          Length = 1006

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 24/183 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRR--ASY 61
           + +K + ++ F+++ + R+ FD      +G+NG GK++I EA+ F   G    RR   SY
Sbjct: 1   MILKEIKMNNFKSHENTRITFDEGIIAIIGENGSGKSSIFEAVFFALFGADALRRMGLSY 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            +V   G          +E         +  E     S +  +        + E+NK + 
Sbjct: 61  DEVITKGKK---VMSVELEFKINGVKYRVVREYDGRSSAKLYKNGKPYATTISEVNKAIN 117

Query: 122 ISWLVPSMD-------------RIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFE 163
               V                  + +    ER+  + +++          + +  + +++
Sbjct: 118 EILGVDRDMFLNSIYIKQGEIANLLNLPPHERKELIGKLLGIDDFEKCYQKMKDVIDEYK 177

Query: 164 RLM 166
           R +
Sbjct: 178 RQL 180



 Score = 43.4 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           D+ V   +  +TI + S GEQ  V + + LA A  +         ++LDE + +LDE++R
Sbjct: 901 DVKVHSPNGILTIDNLSGGEQIAVALSLRLAIANAL--VGNRVECIILDEPTVYLDENRR 958

Query: 332 NALFRI---VTDIGSQIFMT 348
             L  I   + ++   + +T
Sbjct: 959 AKLAEIFKKIDNVPQMVIIT 978


>gi|262037744|ref|ZP_06011186.1| chromosome segregation protein SMC [Leptotrichia goodfellowii
           F0264]
 gi|261748216|gb|EEY35613.1| chromosome segregation protein SMC [Leptotrichia goodfellowii
           F0264]
          Length = 1176

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 110/289 (38%), Gaps = 47/289 (16%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           + +K L ++ F+++A   +  F+   T  VG NG GK+NIL+AI ++   + +   R   
Sbjct: 1   MHLKALELAGFKSFADKTVVEFNRGITSIVGPNGSGKSNILDAILWVLGEQSYKNIRAKE 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI---SIKLETR-----------DDRSVR 101
            +DV   G     + S       +E  +G  DI    IK+  R           ++R  R
Sbjct: 61  SSDVIFSGGKNKKAKSMAEVSLIIENEDGYLDIDFSEIKITRRIYKSGENEYFINNRKAR 120

Query: 102 CLQIN--------DVVIRVVDELNKHLRISWLVP-SMDRIFSGLSMERRRFLDRMVFAID 152
              IN              +    +  RI    P  +  I    +  +R  +++      
Sbjct: 121 LKDINNLFMDTGIGKQAYSIIGQGRVERIIGSNPRELKEIIEEAAGVKRAKVEKEESEKK 180

Query: 153 PRH----RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
            +       ++   E+ +  R + L +    +    +          KI++ R+ ++   
Sbjct: 181 LKEVKSEIEKITYVEKDLETRVKYLKDEGMKARLYKTYTE-------KIDVHRLMILE-- 231

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            ++  + + ++ +   K  L   +DG   Q    +K+E   KL + R+ 
Sbjct: 232 YNINEKEIARKKYTSEKEELKSIIDGI--QENLEVKKENLGKLNEKREK 278


>gi|332158041|ref|YP_004423320.1| chromosome segregation protein smc1 [Pyrococcus sp. NA2]
 gi|331033504|gb|AEC51316.1| chromosome segregation protein smc1 [Pyrococcus sp. NA2]
          Length = 1178

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 78/224 (34%), Gaps = 31/224 (13%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
           I+ L +  F++Y    + + F    T  VG NG GK+NI +AI F+  G      R +  
Sbjct: 4   IEKLELKGFKSYGNRKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 63

Query: 62  ADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-------VIRVV 113
           +D+   GS     + +A V       D    ++  +    R +  +              
Sbjct: 64  SDLIFAGSKSEGPAKYAEVTIYFNNEDRGFPIDEDEVVIKRRVYPDGRSHYWLNGKRATR 123

Query: 114 DELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
            E+   L  + + P    I              +ERR  LD +    +          E+
Sbjct: 124 SEILDLLSSAMISPEGYNIILQGDITKFIKMSPIERRLILDDISGIAEYD-----AKKEK 178

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
            ++     L +   + +    +  ++ +   K+   R + +  L
Sbjct: 179 ALQE----LKQAEENLARVDLLIREVKKQLDKLEKERNDALRYL 218



 Score = 36.0 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 272  DLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
            ++      K +      S GE+ +  +    A           AP  L DEI AHLD+  
Sbjct: 1053 EIEAKPAGKDVKRIEAMSGGEKALTALAFIFA-----IQKFKPAPFYLFDEIDAHLDDAN 1107

Query: 331  RNALFRIVTD--IGSQIFM 347
               +  ++ +    SQ  +
Sbjct: 1108 VKRVADLIKESSKESQFIV 1126


>gi|222099796|ref|YP_002534364.1| DNA double-strand break repair rad50 ATPase [Thermotoga neapolitana
           DSM 4359]
 gi|221572186|gb|ACM22998.1| DNA double-strand break repair rad50 ATPase [Thermotoga neapolitana
           DSM 4359]
          Length = 853

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/286 (17%), Positives = 105/286 (36%), Gaps = 40/286 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYAD 63
           ++ + L    F    S+ + F+   TI  G NG GK++I EAISF   G G R   +  D
Sbjct: 1   MRPERLVAKNFLGLKSVDINFEKGITIIEGPNGAGKSSIFEAISFALFGEGIRYGRNVYD 60

Query: 64  VTRIGSPS-FFSTFARVEGMEGLADISIKLETR---------------DDRSVRCLQIND 107
                SP        R E      ++  ++E+                  ++ + ++++D
Sbjct: 61  YVNTESPERRAQLIFRFERGGKRYEVLREIESGVRKKHSAVLVEVLEEGKKARQAVKVDD 120

Query: 108 VVIRVVDELN---KHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           V  ++ + L    +    +  +P   +D +      E  R +  +    D      +   
Sbjct: 121 VRKKIEEILGVDSRTFTKTIFLPQGKIDELLKSTPGEISRIISDVFLDED-----ILKRL 175

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           E  +  +   L +        S  E  ++E+   ++  R+E +    S ++   ++    
Sbjct: 176 EDTLNKKMNELNQET------SGYERLLSEIISYLDRYRLEDLKKKLSDLLSEKKRLLDE 229

Query: 223 HIKL-----SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
             KL      L+  ++    +     KE   K L +  +++   ++
Sbjct: 230 EEKLRGEEKRLSYLVE--RYREIVEKKERLKKLLQEKTRLEEEVKQ 273


>gi|322371770|ref|ZP_08046313.1| chromosome segregation protein [Haladaptatus paucihalophilus DX253]
 gi|320548655|gb|EFW90326.1| chromosome segregation protein [Haladaptatus paucihalophilus DX253]
          Length = 888

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K + + +S F+ Y    L  ++  T+  G NG GK+++LEA  F   G      +  DV
Sbjct: 1   MKFERVRLSNFKCYEDADLALESGITVIHGLNGSGKSSLLEACFFALYGARALDRTLEDV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
             IG+       A VE     A  S  +  R   +    Q
Sbjct: 61  VTIGAED-----AEVELWFTHAGGSYHIHRRIRATGESAQ 95



 Score = 36.4 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 33/274 (12%)

Query: 97  DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
           DR  R  +I  V  +  D  ++  R++     +D +       R    D+     + R  
Sbjct: 586 DRRTRIERIQTVQEKKADAESELDRLAEKRSHLDEL---NDQRRENLSDKRARQSELRDA 642

Query: 157 RRMIDFERL--MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM--INALSSLI 212
                 ER    + R     E   D    SS+  Q  +L  +I   R E+  +  L    
Sbjct: 643 YDESAVERARDNKQRAENYLEQVADK--LSSLREQRDDLIDRIGAVRGEIEELEELRDRR 700

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM------------DSM 260
            +  ++ +     L             +  L+ E  ++     +             DS 
Sbjct: 701 DDIEERVSA----LESLYDEAADLQSMYGDLRAELRQRNVVSLERMLNEVFDLIYQNDSY 756

Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN-TTGFAPI--L 317
           +R  L G +R  +      + +     S GE+ +  + +  A  RL++    G AP+  L
Sbjct: 757 ARIALDGEYRLTIYQK-DGEPLDPEQLSGGERALFNLSLRCAIYRLLAEGIEGSAPMPPL 815

Query: 318 LLDEISAHLDEDKRNALFRIVTDIG----SQIFM 347
           +LDE +  LD    + L  +V  +      QI +
Sbjct: 816 ILDEPTVFLDSGHVSQLVELVESMRELGVEQIIV 849


>gi|228910010|ref|ZP_04073830.1| DNA repair protein recN [Bacillus thuringiensis IBL 200]
 gi|228849527|gb|EEM94361.1| DNA repair protein recN [Bacillus thuringiensis IBL 200]
          Length = 600

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 23  LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 78  YGTEK-----AEIEGLFYVEDEKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGKGLDNVR 270


>gi|256827010|ref|YP_003150969.1| chromosome segregation protein SMC [Cryptobacterium curtum DSM
           15641]
 gi|256583153|gb|ACU94287.1| chromosome segregation protein SMC [Cryptobacterium curtum DSM
           15641]
          Length = 1184

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 21/171 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++A    L F+   T  VG NG GK+N+ +A+   L     +  R  +
Sbjct: 1   MHLKSLVLKGFKSFADRSVLSFEPGITAVVGPNGSGKSNVSDAVLWVLGERNAKNLRGQA 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   GS      + A VE +    D ++ +E  +    R +         IN  + R
Sbjct: 61  MEDVIFAGSAVRKPVSVAEVELILDNTDGTLPVEYSEVSIARRMYRSGESEYLINGTIAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
            +D         L            +  I      +RR  ++     +  +
Sbjct: 121 RMDVLDILHDSGLGTGTHSIISQGHLASILQSRPEDRRALIEEAAGVLKHK 171


>gi|228987365|ref|ZP_04147485.1| DNA repair protein recN [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772337|gb|EEM20783.1| DNA repair protein recN [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 600

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 23  LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 78  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 133 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 188

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ +    +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 230 DEENDLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270


>gi|332638234|ref|ZP_08417097.1| Barmotin [Weissella cibaria KACC 11862]
          Length = 1185

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 108/288 (37%), Gaps = 32/288 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +K+K L IS F+++A   ++ F    T  VG NG GK+NI+EAI ++      +G R   
Sbjct: 1   MKLKTLEISGFKSFADRTKIEFMPGITGVVGPNGSGKSNIIEAIRWVMGEQSAKGLRGDK 60

Query: 61  YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
            +DV   G S       A V       D  +  +  + R  R L        QIN   +R
Sbjct: 61  MSDVIFGGTSQRAPLNRAEVSITFDNTDRYLNSDYSEIRITRALYRNGDSKYQINGTTVR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
            + ++++    S L      I S             ERR  ++ +       +++     
Sbjct: 121 -LKDIHELFMDSGLGRESFSIISQGRVESIFSAKPEERRSIIEDVAGVYK--YKQNKDKA 177

Query: 163 ERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMIN--ALSSLIMEY 215
           E+ +       NR+    Y   +  + +  Q A+    +   AR + ++   L   + ++
Sbjct: 178 EKELTGVQDNLNRVQDILYELENRVTPLAEQSAKAQTYLTTKARFDQLDQSRLVLELTDW 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
             ++     +LS     +    +S     +  A       + +   ++
Sbjct: 238 YTEQADIKAQLSRAEDENETHAESVKTHTDALAAMKQARTEAEEKQQQ 285


>gi|325191196|emb|CCA25982.1| structural maintenance of chromosomes protein 6 puta [Albugo
           laibachii Nc14]
          Length = 1156

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRG-FRRASYAD 63
           I+ +    F  +  LR+          G+NG GK+ I+ AI     +  R   R  S  +
Sbjct: 97  IEEIYCENFMCHQKLRVELSPHINFITGENGSGKSAIIAAIQICLGASARSTHRGKSLKN 156

Query: 64  VTRIGSPSFFSTFARVEGMEGLAD 87
           + R G          +       D
Sbjct: 157 LIRHGHDGHALLRVTLRNDGSSGD 180


>gi|126658256|ref|ZP_01729406.1| hypothetical protein CY0110_12692 [Cyanothece sp. CCY0110]
 gi|126620405|gb|EAZ91124.1| hypothetical protein CY0110_12692 [Cyanothece sp. CCY0110]
          Length = 390

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 55/387 (14%), Positives = 129/387 (33%), Gaps = 50/387 (12%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----- 56
            N++ I+ L+I  +R +    +   AQ  + VGDN  GKT+ L+AI  L   + +     
Sbjct: 9   VNQM-IRDLSIKNYRCFEDFYVDGLAQVNLIVGDNNSGKTSFLKAICLL-LDKSYYYKLH 66

Query: 57  -RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            +  +  D+ ++    F S     +    +  + +             +IN  +    D 
Sbjct: 67  NKTTTLIDLLKL-RKEFLSLALEDKKKSNIVKVYLIPHL-----FYQYKINKTIEIFCDN 120

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
                    +     ++      E+ +F +  +   +    +   +F++       +  +
Sbjct: 121 --DFFSKVEITN--LKL------EKSKFKNIHLLTTEDECFKINYEFKKSNTENKNIRGQ 170

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
            +++ +   +   +  E   +    R+  I  L      Y     F  +       ++  
Sbjct: 171 AFYEINQQGTYIQETPENANQ---TRLNGIERLI----MYTPDSIFMPLTYDYLDDVEKN 223

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           +D      KE+   +       D       +  +   + +    +   I   S G+    
Sbjct: 224 WDLIQLTPKEDKVIEALKIINPDVERIGFTVSQYTKQIRLKIKGEEQPIPLSSMGQGMNR 283

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR----NALFRIVTDIGSQIFMTG-- 349
           ++G+      + +       +LL+DEI   L  + +      L +   ++  QIF T   
Sbjct: 284 ILGL------MTTAVILENGVLLIDEIETGLHYEAQTDMWRLLIKTAQELNVQIFATTHS 337

Query: 350 -----TDKSVFDSLNET--AKFMRISN 369
                  +   + + +    K  R+ N
Sbjct: 338 WDCICAFQEALEDIEDKPVGKLFRLDN 364


>gi|332358678|gb|EGJ36501.1| cell division protein Smc [Streptococcus sanguinis SK355]
          Length = 1178

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQIKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            K+  A  E +  +   +  Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 EKLIKA-EEDLTNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|39937549|ref|NP_949825.1| chromosome segregation protein SMC [Rhodopseudomonas palustris
           CGA009]
 gi|39651408|emb|CAE29930.1| putative chromosome segregation SMC protein [Rhodopseudomonas
           palustris CGA009]
          Length = 1177

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 62/169 (36%), Gaps = 24/169 (14%)

Query: 2   TNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           ++++K+  L +  F+++      + +   T  VG NG GK+N++EA+ +       +   
Sbjct: 21  SDQMKLTRLRLHGFKSFVEPTDFMIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLR 80

Query: 61  YADVT--------RIGSPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQI 105
             D+            + +       ++  +  A        ++ +  R +R +    +I
Sbjct: 81  ATDMDAVIFAGSGNRPARNHAEVVMSIDNSDRTAPAALNDADTLDISRRIEREAGSVYRI 140

Query: 106 NDVVIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
           N   +R  D   L          P++        I      +RRR L+ 
Sbjct: 141 NGREVRARDVQLLFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 189



 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  +++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1065 GKKPQSLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCDL 1119

Query: 338  VTDIGSQI---FMTGTDKSV 354
            +TD+       F+T T   +
Sbjct: 1120 LTDMAKTTETRFITITHNPI 1139


>gi|149020177|gb|EDL78166.1| SMC2 structural maintenance of chromosomes 2-like 1 (yeast)
           (predicted) [Rattus norvegicus]
          Length = 868

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 97/270 (35%), Gaps = 30/270 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLF 252
           + ++    L +   ++S   LKE   K L 
Sbjct: 233 LYIAYQFLLAEDTKERSAGELKEMQDKILK 262


>gi|284929413|ref|YP_003421935.1| condensin subunit Smc [cyanobacterium UCYN-A]
 gi|284809857|gb|ADB95554.1| condensin subunit Smc [cyanobacterium UCYN-A]
          Length = 1198

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + IK + +S F+++  +  + F    T+  G NG GK+NIL+A+ F   L+  +G R   
Sbjct: 2  VHIKRIELSHFKSFGGTTSIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGLRAER 61

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLAD 87
            D+    + +  +  A V     ++D
Sbjct: 62 LPDLISHNTNNRNNREAYVSVTFDISD 88


>gi|332362455|gb|EGJ40255.1| cell division protein Smc [Streptococcus sanguinis SK1056]
          Length = 1178

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 NKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            ++  A  E +  +   +  Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 ERLTQA-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|328946756|gb|EGG40894.1| cell division protein Smc [Streptococcus sanguinis SK1087]
          Length = 1178

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDVANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQIKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            K+  A  E +  +   +  Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 EKLTKA-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|238916989|ref|YP_002930506.1| chromosome segregation protein [Eubacterium eligens ATCC 27750]
 gi|238872349|gb|ACR72059.1| chromosome segregation protein [Eubacterium eligens ATCC 27750]
          Length = 1189

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 99/284 (34%), Gaps = 45/284 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  R + 
Sbjct: 1   MYLKSIEVQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ +     F      ++  +    +    + +  R  RS      IN    R
Sbjct: 61  MEDVIFAGTENRKPVGFAFVSITLDNSDHALPVDYDEVTVSRRVYRSGESEYLINGNSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + RR+    +
Sbjct: 121 LKDVTEMFYDTGIGKEGYSIIGQGQIDKILSGKPDERRELFDEAAGIVKFK-RRKATAIK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN----------------- 206
           +L   R  L+          S +E Q+  L V+ +    E +                  
Sbjct: 180 KLENERANLVRVN----DILSELEKQVGPLQVQ-SEKAKEYLEYKADLKKYDVNAFLLES 234

Query: 207 -ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
             +S  + E + K       LS +          +   +E+ +K
Sbjct: 235 DRISKDLEELIGKIGIADEDLSNSRAEYESTKAEYEEAEEQLSK 278


>gi|62990166|ref|NP_032043.3| structural maintenance of chromosomes protein 2 [Mus musculus]
 gi|62871715|gb|AAH94380.1| Structural maintenance of chromosomes 2 [Mus musculus]
 gi|122890022|emb|CAM14006.1| structural maintenance of chromosomes 2 [Mus musculus]
 gi|148670352|gb|EDL02299.1| structural maintenance of chromosomes 2 [Mus musculus]
          Length = 1191

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 98/280 (35%), Gaps = 34/280 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +      +M  ++  +  +
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE--YQKVMREIEHLSRLY 234

Query: 224 IKLSLTGFLDGKFDQSFCALKE------EYAKKLFDGRKM 257
           I        D K ++S   LKE         + L +  K 
Sbjct: 235 IAYQFLRAEDTK-ERSAGELKEMQDKIVNLQEVLSENEKK 273


>gi|332797961|ref|YP_004459461.1| homologous recombination repair protein Rad50 [Acidianus hospitalis
           W1]
 gi|332695696|gb|AEE95163.1| Rad50, homologous recombination repair enzyme [Acidianus hospitalis
           W1]
          Length = 863

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 4/128 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ + +  F ++ S  + F       VG NG GKT+I++ I F       R     ++
Sbjct: 1   MKIEKIFLQNFLSHESSEINFKGSINAIVGQNGAGKTSIIDGIVFSLFSESSRGNI-KNL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  +      + E  +G     IK +  +  +    + N  + R   E+++ ++   
Sbjct: 60  VKKGKSTGI---VQTEIRDGNNLYLIKRDIVNSSNDFIAKNNIGIARGRKEVDRKIQEIL 116

Query: 125 LVPSMDRI 132
            +     +
Sbjct: 117 KLDKDILL 124



 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
               + I   S GE+  + + + +A A+ + +  G    +++DE + HLDE+++  L  +
Sbjct: 761 AGNDLDIESLSGGERISIALALRIAIAKSLMDEIG---FMIMDEPTIHLDEERKKELLNV 817

Query: 338 VT---DIGSQIFMTGTDKSVFDSLNE 360
           +    +I  QI +  T       +++
Sbjct: 818 IKYSMNIIPQIII-VTHDDEIKEISD 842


>gi|12850267|dbj|BAB28654.1| unnamed protein product [Mus musculus]
          Length = 270

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 94/262 (35%), Gaps = 28/262 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +      +M  ++  +  +
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE--YQKVMREIEHLSRLY 234

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
           I        D K ++S   LKE
Sbjct: 235 IAYQFLRAEDTK-ERSAGELKE 255


>gi|225026449|ref|ZP_03715641.1| hypothetical protein EUBHAL_00698 [Eubacterium hallii DSM 3353]
 gi|224956241|gb|EEG37450.1| hypothetical protein EUBHAL_00698 [Eubacterium hallii DSM 3353]
          Length = 102

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +  + +  F+    + L F     + +GDNG GK+++LEAI     G
Sbjct: 1  MYLNKVTVKNFKAITDMELSFTPGVNLLIGDNGTGKSSMLEAIGVAISG 49


>gi|294010077|ref|YP_003543537.1| chromosome segregation protein [Sphingobium japonicum UT26S]
 gi|292673407|dbj|BAI94925.1| chromosome segregation protein [Sphingobium japonicum UT26S]
          Length = 1147

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 18/128 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++IK L +S F+++     L  +   T  VG NG GK+N+LEAI ++   S  +  R   
Sbjct: 1   MQIKRLKLSGFKSFVDPTELRIEPGLTGIVGPNGCGKSNLLEAIRWVMGESSAKSMRGGG 60

Query: 61  YADVTRIG-SPSFFSTFARV------------EGMEGLADISIKLETRDDRS-VRCLQIN 106
             DV   G S      FA V              +E  AD  +++  R +R      + N
Sbjct: 61  MEDVIFAGTSTRPQRDFAEVSLLTVQEQGELFNAVEVAADGELEVTRRIERGAGSAYRAN 120

Query: 107 DVVIRVVD 114
              +R  D
Sbjct: 121 GRDVRAKD 128



 Score = 36.4 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K   +   S GEQ +  V +           T  API +LDE+ A LD+        +
Sbjct: 1037 GKKLAALTLLSGGEQALTAVALIFGLF-----LTNPAPICVLDEVDAPLDDANVERFCDL 1091

Query: 338  VTDIGSQI 345
            +  + +Q 
Sbjct: 1092 LDAMVAQT 1099


>gi|315652048|ref|ZP_07905049.1| chromosome segregation protein Smc [Eubacterium saburreum DSM 3986]
 gi|315485695|gb|EFU76076.1| chromosome segregation protein Smc [Eubacterium saburreum DSM 3986]
          Length = 1185

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  R  +
Sbjct: 1   MYLKRIEIQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVSDAVRWVLGEQSAKQLRGGN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       F      ++  +   DI    + +  R  RS      IN    R
Sbjct: 61  MQDVIFAGTELRKPLGFAYVAITLDNSDHKLDIDFNEVTVSRRLFRSGESEYLINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          +D+I +G   +RR   D
Sbjct: 121 LKDISELFFDTGIGKDGYSIIGQGQVDKILNGRPEDRRELFD 162


>gi|268324286|emb|CBH37874.1| hypothetical protein, containing RecF/RecN/SMC N terminal domain
          [uncultured archaeon]
          Length = 641

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 2/89 (2%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASY 61
            I +K + +  F +Y   R+       +  G NG GK++IL AIS  L      R    
Sbjct: 9  PDIWLKEIILENFMSYEYARIPLKRGLNLISGPNGAGKSSILLAISVALGQIYTERSRRL 68

Query: 62 ADVTRIGSP-SFFSTFARVEGMEGLADIS 89
           D+ R G      +     E   G   IS
Sbjct: 69 RDLIRRGKELGRITLVFDNEAKNGKRPIS 97


>gi|315230679|ref|YP_004071115.1| DNA double-strand break repair rad50 ATPase [Thermococcus
           barophilus MP]
 gi|315183707|gb|ADT83892.1| DNA double-strand break repair rad50 ATPase [Thermococcus
           barophilus MP]
          Length = 883

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 82/223 (36%), Gaps = 22/223 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI----SFLSPGRGFRRAS 60
           ++I+ + + +FR++   ++ F +   + +G NG GK+++L+AI     + +  +  +   
Sbjct: 1   MRIEKIIVRDFRSHEFTKVTFTSGINLIIGQNGSGKSSLLDAILIGLYWPAKPKDLK--K 58

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR-----DDRSVRCLQINDVVIR---- 111
            + +   G  +  + F   +G+      +I          D         N   +R    
Sbjct: 59  DSFLRVNGKSTEITIFFEKDGVRYQVHRNITRGIAFAKYYDGTWHYVTDANQKAVRDWME 118

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            +   +  +   ++              R + + +++             ++ L+  R  
Sbjct: 119 KLIPYDIFVNAIYIRQGEIDAILESDESREKVVRKVLGLDKYE-----NAYKNLLEVRKV 173

Query: 172 LLTEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLI 212
           + ++      + ++++    M +   K   + +  IN LS  I
Sbjct: 174 IDSKIKGIEEYLNAMKNIDDMIKEAEKELSSAIRQINELSPQI 216



 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 8/139 (5%)

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-HRSDLIVDYCDKAITIAHGSTGEQKV 294
             +   A   EYA ++F+    +  S  T+     +  L V Y  K   ++  S GE+  
Sbjct: 739 LKEDALAKVGEYASEIFEELTEEKYSGITVKAKESKVVLGVIYDGKERDLSFLSGGERIA 798

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---DIGSQIFMTGTD 351
           + +   LA +  ++   G  P+L++DE + +LD+++R  L  I+        Q+ +   D
Sbjct: 799 LGLAFRLALSLYLA---GEIPLLIMDEPTPYLDDERRRRLVDIMERYLRKIPQVIIVSHD 855

Query: 352 KSVFDSLNETAKFMRISNH 370
           + + D+  +    +R+ N 
Sbjct: 856 EELKDA-ADRVIRVRLENG 873


>gi|87198977|ref|YP_496234.1| chromosome segregation protein SMC [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134658|gb|ABD25400.1| Chromosome segregation protein SMC [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 1147

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++ + L +S F+++     L  +   T  VG NG GK+N+LEAI ++   S  +  R   
Sbjct: 2   MQFRRLKLSGFKSFVEPAELRIEPGLTGVVGPNGCGKSNLLEAIRWVMGESSPKSMRGGG 61

Query: 61  YADVTRIG-SPSFFSTFARV-----EGMEGLADISIKLETRDDRS-VRCLQINDVVIRVV 113
             DV   G +      FA V         G     +++  R +R      ++N   +R  
Sbjct: 62  MEDVIFAGTATRPARAFAEVMLTAETDPSGPFGGELEVVRRIERGAGSAYRVNGKDVRAK 121

Query: 114 D 114
           D
Sbjct: 122 D 122


>gi|73668137|ref|YP_304152.1| condensin subunit Smc [Methanosarcina barkeri str. Fusaro]
 gi|72395299|gb|AAZ69572.1| condensin subunit Smc [Methanosarcina barkeri str. Fusaro]
          Length = 1175

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 27/166 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK +    F+++   +++ F    T   G NG GK+NI++ I F   L+  R  R   
Sbjct: 1   MYIKEIEFVNFKSFGKKVKIPFYNDFTTISGPNGSGKSNIIDGILFALGLTSSRTLRAEK 60

Query: 61  YADVTRIGS----PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI--------NDV 108
             D+   G     P F     R +  +    + +  E    R VR  +         N  
Sbjct: 61  LTDLIYNGDASKKPDFAQVTIRFDNSDHKLPLELD-EIEVSRKVRRTKNGYYSYFYFNGK 119

Query: 109 VIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145
            +  + E++  L  + + P          + +I S  S+ERR+ +D
Sbjct: 120 SV-SLGEVHSQLEKAGITPEGYNVVMQGDVTQIISMTSVERRKIID 164


>gi|261207044|ref|ZP_05921733.1| chromosome partition protein SMC [Enterococcus faecium TC 6]
 gi|289565323|ref|ZP_06445773.1| chromosome segregation protein SMC [Enterococcus faecium D344SRF]
 gi|294614480|ref|ZP_06694395.1| chromosome segregation protein SMC [Enterococcus faecium E1636]
 gi|260078672|gb|EEW66374.1| chromosome partition protein SMC [Enterococcus faecium TC 6]
 gi|289162813|gb|EFD10663.1| chromosome segregation protein SMC [Enterococcus faecium D344SRF]
 gi|291592657|gb|EFF24251.1| chromosome segregation protein SMC [Enterococcus faecium E1636]
          Length = 1193

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 101/288 (35%), Gaps = 38/288 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDEL 116
             D+   GS +      A V  +   +D  + LE  +    R  +        I      
Sbjct: 61  MPDIIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K ++  +L   +             + IFS    +RR   +     +   +++R    E
Sbjct: 121 LKDIQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLI 212
           + +      L+           +E Q+  L  + + A  E +             + + I
Sbjct: 179 QKLFETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEI 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  +    +L       GK  +S    +   AK+  +  + D +
Sbjct: 235 KTAKKDWDNKQAQLGKFNLELGKLSESIQEQESILAKQRKENAQADRL 282


>gi|198421707|ref|XP_002129062.1| PREDICTED: similar to structural maintenance of chromosomes 1A
           [Ciona intestinalis]
          Length = 1225

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYADV 64
           ++ + +  F++Y    L+   + T  +G NG GK+N+++AISF+        R    +D+
Sbjct: 4   LESIEVENFKSYRGKILIPFKKFTAIIGPNGSGKSNLMDAISFVLGEKTSSLRVKKLSDL 63

Query: 65  TRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVI 110
              G+P     ST ARV      ++      TR  +      +IND V+
Sbjct: 64  I-HGAPIGRPISTRARVTATYCNSNGEKTEFTRIIKGTSAENRINDKVV 111


>gi|115526436|ref|YP_783347.1| chromosome segregation protein SMC [Rhodopseudomonas palustris
           BisA53]
 gi|115520383|gb|ABJ08367.1| condensin subunit Smc [Rhodopseudomonas palustris BisA53]
          Length = 1154

 Score = 61.1 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K+  L +  F+++      V +   T  VG NG GK+N++EA+ +       +    AD
Sbjct: 1   MKLTRLRLHGFKSFVEPTDFVIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRAAD 60

Query: 64  VT--------RIGSPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
           +            S +       ++  +  A  +      +++  R +R +    +IN  
Sbjct: 61  MDAVIFAGSGNRPSRNHAEVVMTIDNTDHTAPAAMNDQELLEISRRIEREAGSVYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 121 EVRARDVQLLFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166



 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  T++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1042 GKKPQTLSLLSGGEQALTALSLIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCDL 1096

Query: 338  VTDIGSQIFMTGTDKSVF 355
            + +      MT T ++ F
Sbjct: 1097 LNE------MTSTTETRF 1108


>gi|316957977|gb|EFV47243.1| putative RecF/RecN/SMC N domain protein [Trichinella spiralis]
          Length = 193

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 43/134 (32%), Gaps = 13/134 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           IK L +  F  +  + L F  +    +G NG GK+ +L A+      R     R ++ +D
Sbjct: 21  IKRLRVRNFMCHRDIDLEFGERVNFIIGVNGSGKSALLSAVMVALGCRAVDTSRGSNLSD 80

Query: 64  VTRIGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRSVRCLQIND---VVIRVV 113
             + G                          I ++     + S R    N    VV R  
Sbjct: 81  YVKEGESFAMVEITLCNSGVQSYQSDVYGDCIIVRRRIGANGSSRYSICNSNGNVVCRKY 140

Query: 114 DELNKHLRISWLVP 127
             L   L    + P
Sbjct: 141 ATLRLILSKMNIQP 154


>gi|262373319|ref|ZP_06066598.1| chromosome segregation protein SMC [Acinetobacter junii SH205]
 gi|262313344|gb|EEY94429.1| chromosome segregation protein SMC [Acinetobacter junii SH205]
          Length = 1149

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 99/291 (34%), Gaps = 46/291 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   R+F   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRVFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
             + +   +     R+ D    ++ + R L      +    ++E Q+  L ++I   +  
Sbjct: 180 TLQHLEHTEQN-LARLEDIAAELKSQLRTLKRQSEAAIQYKTLETQIRTLKIEILSFQAN 238

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
               L     EY  + N    +  L        +    A    + + +   
Sbjct: 239 QSQKLQ---QEYTVEMNELGERFKLVRSESHTIEHDLEATSALFQRLIQQS 286



 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              +  ++A  S GE+ +  + +  A  RL       AP  +LDE+ A LD+        +
Sbjct: 1039 GKRNSSLALLSGGEKALTALALVFAIFRL-----NPAPFCVLDEVDAPLDDANVQRYCNL 1093

Query: 338  VTDIGSQI 345
            V ++  Q+
Sbjct: 1094 VKELSEQV 1101


>gi|114625962|ref|XP_001136663.1| PREDICTED: structural maintenance of chromosomes 2-like 1 isoform 1
           [Pan troglodytes]
 gi|114625964|ref|XP_001136738.1| PREDICTED: structural maintenance of chromosomes 2-like 1 isoform 2
           [Pan troglodytes]
          Length = 760

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|254974794|ref|ZP_05271266.1| chromosome partition protein [Clostridium difficile QCD-66c26]
 gi|255092182|ref|ZP_05321660.1| chromosome partition protein [Clostridium difficile CIP 107932]
 gi|255313921|ref|ZP_05355504.1| chromosome partition protein [Clostridium difficile QCD-76w55]
 gi|255516600|ref|ZP_05384276.1| chromosome partition protein [Clostridium difficile QCD-97b34]
 gi|255649700|ref|ZP_05396602.1| chromosome partition protein [Clostridium difficile QCD-37x79]
 gi|260682856|ref|YP_003214141.1| chromosome partition protein [Clostridium difficile CD196]
 gi|260686454|ref|YP_003217587.1| chromosome partition protein [Clostridium difficile R20291]
 gi|260209019|emb|CBA62112.1| chromosome partition protein [Clostridium difficile CD196]
 gi|260212470|emb|CBE03375.1| chromosome partition protein [Clostridium difficile R20291]
          Length = 1184

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 91/269 (33%), Gaps = 35/269 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++     ++F    T  VG NG GK+NI +A+   L     +  R   
Sbjct: 1   MYLKRLELKGFKSFPVKTDIIFKEGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+      ++      ++  E   ++     T   R+ R       +N+   R
Sbjct: 61  LEDVIFAGTDTKKPMNYCEVALTIDNSENQLELDFTEVTIRRRAYRNGESEFFLNNKSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D I S   + RR+  D                ++
Sbjct: 121 LKDIKEVFLDTGIGKDGYSIIEQGKVDEILSNNPLSRRKVFDEACGISK-------YRYK 173

Query: 164 RLMRGRNRLLTE---GYFDSSWCSSIEAQMAELGVKIN--IARVEMINALSS-LIMEYVQ 217
           +    RN   T+      D  +    E Q+  L  +       +E+   L    +  +++
Sbjct: 174 KQEAERNLSNTKENLERIDDVYIEI-ENQLKPLFNQQTKAKKYLEISEKLKILEVNSFIR 232

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +      +LS         ++     +E+
Sbjct: 233 EIEGIEKELSEVNEHRKVIEKELNEKEEQ 261


>gi|325694851|gb|EGD36756.1| cell division protein Smc [Streptococcus sanguinis SK150]
          Length = 1178

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 GKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            K+  A  E +  +   +  Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 EKLTQA-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQANLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 38.0 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|189199338|ref|XP_001936006.1| structural maintenance of chromosomes protein 5 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187983105|gb|EDU48593.1| structural maintenance of chromosomes protein 5 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1128

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 80/274 (29%), Gaps = 20/274 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           +  + ++ F  Y +          + +G NG GK+ ++ AI   L  G     R     +
Sbjct: 71  LVRVKLTNFVTYTAAEFHLGPSLNMVIGPNGTGKSTLVCAICLGLGWGSEHLGRAKQVGE 130

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHLR 121
             + G+           G     +  I    R + +     +N      + V EL K   
Sbjct: 131 YVKHGAAMATIEIELAAGPGKDQNHIITRTIRKEDNQSRWFLNGARSTQKEVIELAKTYS 190

Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR--GRNRLLT 174
           I        +P    +      +  R  +    A  P +     D  + +R   RN    
Sbjct: 191 IQIDNLCQFLPQDRVVEFARMTDVERLRETQ-RAAAPPYMVEWHDKLKALRKDERNLETK 249

Query: 175 EGYFDSSWCSSIEAQMAELG-VKINIARVEM------INALSSLIMEYVQKENFPHIKLS 227
               +    + +  Q A  G V     R E+      +     +I   + ++    +K +
Sbjct: 250 RQNEEKHLEALMRVQTAAQGDVDRIRERQEIQTKLNCLRKAQPVIELRLCRKEIEQLKEN 309

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           L        +          A+      + D   
Sbjct: 310 LRVARLELDEIKVDVEPARQAQAEMQSYQSDIER 343


>gi|67969264|dbj|BAE00985.1| unnamed protein product [Macaca fascicularis]
          Length = 939

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKARSAEELKEMQDKIIKLQEE 266


>gi|58198683|gb|AAW65985.1| chromosome-associated protein E [Homo sapiens]
          Length = 760

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|228902351|ref|ZP_04066508.1| Chromosome partition protein smc [Bacillus thuringiensis IBL 4222]
 gi|228857320|gb|EEN01823.1| Chromosome partition protein smc [Bacillus thuringiensis IBL 4222]
          Length = 1189

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 106/334 (31%), Gaps = 59/334 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +            +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKDEEAKMSTDLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           KL   R+   +     T        LIV+  +KA
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|330822269|ref|YP_004362490.1| hypothetical protein bgla_1p0550 [Burkholderia gladioli BSR3]
 gi|327374106|gb|AEA65460.1| hypothetical protein bgla_1p0550 [Burkholderia gladioli BSR3]
          Length = 595

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + +  L I  FR      L F A   + +G N VGKT +++A+  L  G           
Sbjct: 1  MHLSRLVIKNFRKLKYAELTFQAGLNVLIGGNNVGKTAVIDALRALLAG------HDEPY 54

Query: 65 TRIGSPS 71
           R+G   
Sbjct: 55 PRLGEED 61


>gi|221633719|ref|YP_002522945.1| putative chromosome segregation protein [Thermomicrobium roseum DSM
           5159]
 gi|221155554|gb|ACM04681.1| putative chromosome segregation protein [Thermomicrobium roseum DSM
           5159]
          Length = 1187

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/271 (20%), Positives = 97/271 (35%), Gaps = 47/271 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++  L +  F+++A  + LVFD   T  VG NG GK+N+ EAI+++     G   R   
Sbjct: 3   VRLLRLALLGFKSFADPVELVFDRGITAIVGPNGSGKSNLAEAIAWVLGEQAGSAVRSRR 62

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G P   S   A V          + +  R+    R +         IN    R
Sbjct: 63  ADDVIFAGGPDRPSLGMAEVTLTLEQDGDELGVPFREVSVTRRVFRDGETQYLINGSRAR 122

Query: 112 VVDEL--NKHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
           + D L     LR  W++    S+D +      ERR +L+         H   +      +
Sbjct: 123 LRDVLRIAAILRADWIITRQGSVDDVLEQRPAERRHYLE---------HAAGLS----AL 169

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV-EMINALSSLIMEYVQKENFPHIK 225
           R R     +             Q+AE   + +  R+ +++  L   +    +        
Sbjct: 170 RLRQAEARQ-------------QLAE--AEQHAQRLDDLLRELEPHVHALGEAAQRAREA 214

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           L++   L     Q   A      ++    R+
Sbjct: 215 LAVRASLREALLQLSAARWRRAREEEAKARR 245


>gi|114625958|ref|XP_001136821.1| PREDICTED: structural maintenance of chromosomes 2-like 1 isoform 3
           [Pan troglodytes]
          Length = 1099

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|14591553|ref|NP_143635.1| chromosome assembly protein [Pyrococcus horikoshii OT3]
 gi|3258234|dbj|BAA30917.1| 1179aa long hypothetical chromosome assembly protein [Pyrococcus
           horikoshii OT3]
          Length = 1179

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 97/287 (33%), Gaps = 38/287 (13%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
           I+ L +  F++Y    + ++F    T  VG NG GK+NI +AI F+  G      R +  
Sbjct: 4   IERLELKGFKSYGNKKVVILFSRGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 63

Query: 62  ADVTRIGSP-------SFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVV 113
           +D+   GS        +  + +   E      D   + ++ R     R     +      
Sbjct: 64  SDLIFAGSKREPPAKYAEVTIYFNNEDRGFPIDEDEVIIKRRVYPDGRSHYWLNGRRATR 123

Query: 114 DELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
            E+   L  + + P    I              +ERR  +D +    +          ER
Sbjct: 124 SEILDLLSAAMISPEGYNIILQGDITKFIKMSPLERRLIIDDISGIAEYD-----AKKER 178

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQKENFP 222
            ++     L +   + +    +  ++ +   K+   R + +    L   + +        
Sbjct: 179 ALQE----LKQAEENLAKVDILIGEVKKQLDKLEKERNDALRYLDLKEKLEKARVGLVLG 234

Query: 223 HI-----KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
            I     ++       G  ++    +++   +   +  + ++  RR 
Sbjct: 235 EIRKIESEIRNNDERIGNIEREIERMEKRLEEIAKEIVEKENELRRI 281


>gi|323140949|ref|ZP_08075861.1| DNA repair protein RecN [Phascolarctobacterium sp. YIT 12067]
 gi|322414552|gb|EFY05359.1| DNA repair protein RecN [Phascolarctobacterium sp. YIT 12067]
          Length = 566

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 85/280 (30%), Gaps = 52/280 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F         F     +F G+ G GK+ +++A   +  GR       AD  R
Sbjct: 2   LQSLHVHNFALLEDAHADFTPGFNVFTGETGAGKSILIDAFGMVLGGRS-----SADYVR 56

Query: 67  IGSPSFFSTFARV-------------EGMEGLADISIKLETRDDRSVRCLQINDVVI--- 110
            G+   +                    G+E   D+ +K +       R   IN V +   
Sbjct: 57  SGTDGLWVQAVFDVSGQQEIKALLAEHGLEPEEDLFLKRQISAAGKSRAY-INGVQVPLA 115

Query: 111 -------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                  R+VD   +H   + L P      +        F    +      +++   ++ 
Sbjct: 116 VLKAIGARLVDIHGQHENQALLKPDAPLHLTDA------FGGSKLAQALQEYKQLYSEYT 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             ++  + L  E             +               I  +S   ++  +++    
Sbjct: 170 AAVKHLSNLEQENEQQDLLLDRYAWE---------------IKEISDAALKPGEEDGLEA 214

Query: 224 IK--LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
               L  +  +    D S+  L EE A      R  D + 
Sbjct: 215 EARLLQNSERIMKAVDSSYQQLDEEDAILSRLARVRDQLQ 254


>gi|162452485|ref|YP_001614852.1| hypothetical protein sce4209 [Sorangium cellulosum 'So ce 56']
 gi|161163067|emb|CAN94372.1| hypothetical protein sce4209 [Sorangium cellulosum 'So ce 56']
          Length = 418

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/401 (14%), Positives = 123/401 (30%), Gaps = 89/401 (22%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K++ L I +FR  A    L F     + +G NG GKT +LE IS +       R+ ++ 
Sbjct: 2   LKLRRLRIEKFRGVAPGTELRFSDGLNVLLGQNGTGKTTLLELISMVV------RSDFSS 55

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R     F   +      E    +++          +   +       +D     L   
Sbjct: 56  LAR---EEFAVEYELAVPEEATVTVAV------SNKEKTGFVGTKDRPRID-----LPER 101

Query: 124 WLVPSMDRIFSGLSMERRRFL-----------------DRMVFAIDPRHRRRMI------ 160
           W   +   I        RR                      +  ++       +      
Sbjct: 102 WFPVADVTIEDSSPGASRRIRYDVERGLTVGDHEPIEGGWEISCLNAGFLWAYMLLDPEF 161

Query: 161 ----DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE------------- 203
                + R+   R+      + +S    +     ++   ++ + R               
Sbjct: 162 IVTPTYNRV---RDASSARRFDESLELFTWLTGSSDARRRVFVLRERVLYAGIKSGLLPN 218

Query: 204 -MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            ++  L S+         F H  L     + G        LK +  ++   G   +    
Sbjct: 219 ALLRQLGSMYEPSRSDYTFKHSDLDFLATIKGIMGFDAAELKVDVTERNARGELHE---- 274

Query: 263 RTLIGPHRSDLIVDY---CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
              +G    DL+  +     + IT    S G+++++    +LA             I++ 
Sbjct: 275 YLTLG----DLVFRFWWEGGEFITHTRLSYGQKRLLTFFYYLA---------CNDDIVIA 321

Query: 320 DEISAHLDEDKRNALFRIVTDIGS-QIFMTGTDKSVFDSLN 359
           DE+   L     + +   V  +G  Q F+T  +  + D + 
Sbjct: 322 DELVNGL---HHHWIAACVEALGQRQAFLTSQNPLLLDYIP 359


>gi|222478619|ref|YP_002564856.1| SMC domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222451521|gb|ACM55786.1| SMC domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 902

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/291 (16%), Positives = 90/291 (30%), Gaps = 45/291 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +    + +S F+ Y    L      T+  G NG GK+++LEA  F   G      +  DV
Sbjct: 1   MNFDRVRLSNFKPYGDADLRLTEGVTVIHGLNGSGKSSLLEACFFALYGSKALDGTLGDV 60

Query: 65  TRIGSPSFFS------------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
              G                     R++  +G  D    LET D   V        V   
Sbjct: 61  ITNGEEETEVDLWFTHDGASYHIERRLKEYDGRIDHQCTLETTDGSDVTRDGA-RAVREF 119

Query: 113 VDELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
           V EL +    +++         ++++ +    ER+  +D ++         ++ ++    
Sbjct: 120 VTELLRMDAEAFVNCAYVRQGEVNKLINATPRERQDTIDDLLQ------LGKLEEY---- 169

Query: 167 RGRNRLLTEGYFD-----SSWCSSIEAQMAELGVKINIARV-----------EMINALSS 210
           R R      G  D           ++ Q+AE   K    R+           + I+   +
Sbjct: 170 RERAGDARLGVEDVLENRRGRLDQLDDQIAEKKEKDLHDRLNGLESDLSEVTDEIDRYET 229

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
              +  +        LS         +     + E  A      R+ D   
Sbjct: 230 QREQAKETREAAAETLSTHAEKRETLESVAAEIDEIEATIREAERERDEHR 280



 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 76/214 (35%), Gaps = 31/214 (14%)

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
                   +   ++ ++  L  +    R E+ NA+  +  E  + EN    + SL   +D
Sbjct: 657 ERKETAEEYLEKVDGELDRLAER----RTELENAIGGVNSEIQELENLREERESLAERVD 712

Query: 234 GKFD--QSFCALKEEYAKKLFDGRKM-----DSMSRRTLIGPHRSDLIVDY--------- 277
              D  +    L+  Y     + R+      +     T    + +D              
Sbjct: 713 ALEDLHEETSELEAMYGDLRAELRQRNVAELERTLNETFELVYGNDAYSHIELDGEYVLT 772

Query: 278 ----CDKAITIAHGSTGEQKVVLVGIFLAHARLISN-TTGFAPI--LLLDEISAHLDEDK 330
                 + +     S GE+ +  + +  A  RL+S    G AP   L+LDE +  LD   
Sbjct: 773 VYQKDGEPLDPEQLSGGERALFNLSLRCAIYRLLSEGIEGAAPTPPLILDEPTVFLDSGH 832

Query: 331 RNALFRIVTDIGS----QIFMTGTDKSVFDSLNE 360
            + L R+V ++      QI +   D  +  + +E
Sbjct: 833 VSRLVRLVEEMRGFGVRQILIVSHDDELVGAADE 866


>gi|86607238|ref|YP_476001.1| DNA repair protein RecN [Synechococcus sp. JA-3-3Ab]
 gi|86555780|gb|ABD00738.1| DNA repair protein RecN [Synechococcus sp. JA-3-3Ab]
          Length = 568

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 86/273 (31%), Gaps = 30/273 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI--SFLSPGRGFRRASYADV 64
           ++ L I  F     L + F A   +  G+ G GK+ IL+A+  +   P R  R  S   +
Sbjct: 2   LRLLRIENFALIEYLEIPFRAGLNVLTGETGAGKSIILDALDAALGGPARALRSGSDRGL 61

Query: 65  TRI-----GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
                    +   +    ++E +E     S +L  R+ +    L++N V++     L+  
Sbjct: 62  VEAIFQPTAALEAWLEQEQIEPLEEGLVCSRELVMRNGKLSSRLRVNGVLVNKAQMLSLR 121

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
            ++  +              +RR+LD        R R  +    +        +     +
Sbjct: 122 SQLVEITAQGQTSQLQSPQTQRRWLDAFGGEKLLRLRSEVAACYQTWSQLKAEIASRQQN 181

Query: 180 SSW----CSSIEAQMAELGV----------KINIARVEMINALSSLIMEYVQKENFPHIK 225
                     +E Q  EL            K+   R  + + +      Y   +      
Sbjct: 182 QHLRLQRLDLLELQAQELAALRLEDPDELTKLERERERLAHRVELQQQSYAAHQLL---- 237

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
                + +     +   L  +  + L    + D
Sbjct: 238 -----YQNDSGSPAIADLLAQAERLLQSMAQRD 265


>gi|20093122|ref|NP_619197.1| chromosome segregation protein [Methanosarcina acetivorans C2A]
 gi|19918459|gb|AAM07677.1| chromosome segregation protein [Methanosarcina acetivorans C2A]
          Length = 1175

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 25/165 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK +    F+++   +++ F    T   G NG GK+NI++ I F   L+  R  R   
Sbjct: 1   MYIKEIEFVNFKSFGKKVKISFYNDFTTISGPNGSGKSNIIDGILFALGLTSSRTLRAEK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD---DRSVRCLQ--------INDVV 109
             D+   G  +    FA+V       D  + LE  +    R VR  +         N   
Sbjct: 61  LTDLIYNGDEAKKPDFAQVTIRFDNTDRKLPLELDEIVVSRKVRRTKSAYYSYFYFNGKA 120

Query: 110 IRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145
           +  + E++  L  + + P          + +I S  S+ERR+ +D
Sbjct: 121 V-SLGEIHSQLSKAGVTPEGYNVVMQGDVTQIISMTSVERRKIID 164


>gi|119579380|gb|EAW58976.1| SMC2 structural maintenance of chromosomes 2-like 1 (yeast),
           isoform CRA_c [Homo sapiens]
          Length = 1099

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|331007822|ref|ZP_08330925.1| hypothetical protein IMCC1989_2132 [gamma proteobacterium IMCC1989]
 gi|330418364|gb|EGG92927.1| hypothetical protein IMCC1989_2132 [gamma proteobacterium IMCC1989]
          Length = 634

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEA-ISFLSPGRGFRRASY 61
           +++K + ISE++N     L FD      IFVG NG GK+N+LEA I        F     
Sbjct: 1   MRLKSVYISEYKNLKKFSLSFDGASFINIFVGKNGSGKSNLLEALIEIFQHLYSF----D 56

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           +D  R      +S    +EG +   D   +    + +  + +    +   V+   + H  
Sbjct: 57  SD--RSELLFNYSIQYEIEGKDIQIDWKDEALRINGKVRKTVGKTALPENVLVYYSGHNT 114

Query: 122 IS 123
             
Sbjct: 115 AV 116


>gi|42519392|ref|NP_965322.1| chromosome partitioning protein Smc [Lactobacillus johnsonii NCC
           533]
 gi|41583680|gb|AAS09288.1| chromosome partitioning protein Smc [Lactobacillus johnsonii NCC
           533]
          Length = 1186

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/377 (15%), Positives = 121/377 (32%), Gaps = 65/377 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + ++ L ++ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R  +
Sbjct: 1   MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116
             DV   GS        A VE +    D  +  +  +    R +  N     +++     
Sbjct: 61  MKDVIFAGSQMRAPMNHAEVELVFDNRDHQLASDNDEVVVTRKILRNGESDYLLNHHPVR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K +R  ++   M             D I +    +RR      +F             E
Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRR-----GIFEEAAGVLHFKQQKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             ++                    A +  +         +++  L   I    ++ +   
Sbjct: 176 IALKQ--------------LDKTNANLIRI--------NDLVKELEGRIEPLHEQSSLAK 213

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL------IGPHRSDLIVDY 277
                   LD K  Q      E   ++     K  + ++  L      +   ++DL    
Sbjct: 214 EYKFQKEQLDHKLKQLLGLEIESLNEEKKAVAKKAAANQGILNKLDDEVKQSQADLEEKR 273

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHA---RLISNTTGFAPILLLDEISA---HLDEDKR 331
                  A     +Q+++ +   +A       +   +    +    E +A    L +++R
Sbjct: 274 KQSNERHAEKDEKQQELLSLTQKIAALTTDLQMHQQSREYDVATQKEYNAQSEEL-KERR 332

Query: 332 NALFRIVT----DIGSQ 344
             L   +     D+ SQ
Sbjct: 333 KRLLDQLAANEKDLNSQ 349


>gi|229025636|ref|ZP_04182042.1| DNA repair protein recN [Bacillus cereus AH1272]
 gi|228735634|gb|EEL86223.1| DNA repair protein recN [Bacillus cereus AH1272]
          Length = 579

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 57/277 (20%), Positives = 104/277 (37%), Gaps = 51/277 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 2   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110
            G+                   A+ E ++   +  + +  RD         ++N  ++  
Sbjct: 57  YGTEKAEIEGLFYVEDDKHPCIAKAEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTL 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164
            ++ E+ K L           + +    ER  F+      DR+V  +D  ++    D+ER
Sbjct: 117 SILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGDRIVKQLD-IYQNVYGDYER 172

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L +     L          S  E QMA         R+++I      I +   K +    
Sbjct: 173 LKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKMD-EEY 212

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +L+        F++ + AL + Y     D + +D + 
Sbjct: 213 ELTEERLKISNFEKIYKALGDAYRSLSGDSQGLDHVR 249


>gi|268532164|ref|XP_002631210.1| C. briggsae CBR-MIX-1 protein [Caenorhabditis briggsae]
 gi|187036949|emb|CAP23615.1| CBR-MIX-1 protein [Caenorhabditis briggsae AF16]
          Length = 1296

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
          + IK + +  F++Y     +  F  Q     G NG GK+N+L++I FL   S     R  
Sbjct: 1  MHIKSIQLDGFKSYQKHTEIAPFSPQFNAITGYNGSGKSNVLDSICFLLGISKLDNIRAK 60

Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLAD 87
          S  ++   G         R +  +    
Sbjct: 61 SMNELISHGGSKA-VVQIRFDNRDKKQS 87


>gi|326430832|gb|EGD76402.1| hypothetical protein PTSG_07521 [Salpingoeca sp. ATCC 50818]
          Length = 1240

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 65/183 (35%), Gaps = 23/183 (12%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASY 61
           +++  L +  F++Y     +      +  +G NG GK+N+++AISF+     R  R A  
Sbjct: 1   MRLDRLELENFKSYGGHCVIGPFTAFSAVIGPNGSGKSNLMDAISFVLGVRARELRGAQL 60

Query: 62  ADVT------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI----- 110
            D+         G      +   V+  +  AD  I   +   +     +IN   +     
Sbjct: 61  KDLIYSSDSATKGKLRAKVSAVFVDANDEDADELILSRSISAKGSSDYKINGKAVTWEQY 120

Query: 111 ----RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
               + +  L K          ++ I +    +  +  +++  +          ++E   
Sbjct: 121 DERLQSLGLLVKAKNFLVFQGDVENIAAKSPKQLTQLFEQISGS-----AALRDEYEAAK 175

Query: 167 RGR 169
           + R
Sbjct: 176 KAR 178


>gi|315426880|dbj|BAJ48500.1| conserved hypothetical protein [Candidatus Caldiarchaeum
           subterraneum]
          Length = 584

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 8/135 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYADVT 65
           I+ + +  F ++   R+       + VG NG GK++IL AIS  L      R    AD+ 
Sbjct: 13  IREVILENFMSHEYSRIPLRRGLNVIVGPNGAGKSSILLAISVALGQTYTERGQRLADLI 72

Query: 66  RIGSPSFFSTFAR----VEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           R G  S           V+G+  +  I   ++ +     ++       +   +   E+  
Sbjct: 73  RRGYESARVAVVFDNRPVDGVRPIPSINSDTVTITRFLKKTGEYWHYVNNRFKTKAEVGN 132

Query: 119 HLRISWLVPSMDRIF 133
            L    + P    I 
Sbjct: 133 LLSRIGINPDNVLII 147


>gi|260588639|ref|ZP_05854552.1| putative cell division protein Smc [Blautia hansenii DSM 20583]
 gi|331082010|ref|ZP_08331138.1| chromosome segregation protein SMC [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541114|gb|EEX21683.1| putative cell division protein Smc [Blautia hansenii DSM 20583]
 gi|330405605|gb|EGG85135.1| chromosome segregation protein SMC [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 1186

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 98/267 (36%), Gaps = 36/267 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  R  +
Sbjct: 1   MYLKSIEVQGFKSFANKITFEFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGGN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       F      ++  +    I    + +  R  RS      +N    R
Sbjct: 61  MQDVIFSGTETRKPLGFAYVAITLDNSDHKLPIDYQEVTIARRLYRSGESEYLLNGTSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +    +RR     
Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVK--FKRRKNTAI 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSLIMEYVQK 218
           + +    + LT         S +  Q+A L       K+ + + E +  L   I  ++ +
Sbjct: 179 KKLEEEQQNLTRVN---DILSELTRQLAPLEKQAETAKVYLKKKEALKQL--DIQMFLVE 233

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKE 245
                 +L     ++ K++ +   L+E
Sbjct: 234 MARIREQLK---AVEEKYEIAQSDLEE 257


>gi|329667083|gb|AEB93031.1| chromosome partitioning protein Smc [Lactobacillus johnsonii DPC
           6026]
          Length = 1186

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 121/377 (32%), Gaps = 65/377 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + ++ L ++ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R  +
Sbjct: 1   MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116
             DV   GS        A VE +    D  +  +  +    R +  N     +++     
Sbjct: 61  MKDVIFAGSQMRAPMNHAEVELVFDNRDHQLASDNDEVVVTRKILRNGESDYLLNHHPVR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K +R  ++   M             D I +    +RR      +F             E
Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRR-----GIFEEAAGVLHFKQQKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             ++                    A +  +         +++  L   I    ++ +   
Sbjct: 176 IALKQ--------------LDKTNANLIRI--------NDLVKELEGRIEPLHEQSSLAK 213

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL------IGPHRSDLIVDY 277
                   LD K  Q      E   ++     K  + ++  L      +   ++DL    
Sbjct: 214 EYKFQKEQLDHKLKQLLGLEIESLNEEKKAVAKKAAANQGILNKLDDEVKQSQADLEEKR 273

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHA---RLISNTTGFAPILLLDEISA---HLDEDKR 331
                  A     +Q+++ +   +A       +   +    +    E SA    L +++R
Sbjct: 274 KQSNERHAEKDEKQQELLSLTQKIAALTTDLQMHQQSREYDVATQKEYSAQSEEL-KERR 332

Query: 332 NALFRIVT----DIGSQ 344
             L   +     D+ SQ
Sbjct: 333 KRLLDQLAANEKDLNSQ 349


>gi|325969543|ref|YP_004245735.1| SMC domain-containing protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708746|gb|ADY02233.1| SMC domain-containing protein [Vulcanisaeta moutnovskia 768-28]
          Length = 827

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 65/180 (36%), Gaps = 25/180 (13%)

Query: 4   RIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RR 58
           RI+I  L I +FR +    R+ F+    I  G  G GKT+I+++I +   G       R 
Sbjct: 2   RIRINELIIRDFRGFMGENRISFNDGINIIHGPVGSGKTSIVQSIEYALYGTQLEVKERV 61

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           +   D+    + S         G+E + +  +K    + R      IN +  +  +  +K
Sbjct: 62  SKLTDLINEEANSLLVKLVLTNGIEVIRE--LKKSGENVRESSSAIINGIRYKDDEVTSK 119

Query: 119 HLRISWLVPSMDR------------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
            +    +                  +  G   +R  F+D++           + +  R +
Sbjct: 120 IIETLGVDDDDFERFVLVTHRTLEALVYGSVTKRSLFIDKLFG------LEILDNLNRSL 173



 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 85/263 (32%), Gaps = 66/263 (25%)

Query: 154 RHRRRMIDFERLMRGRNRL---LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
            + RR  +   L R    L   L+    D+   + IE Q+  +  ++   R ++ +    
Sbjct: 550 SYLRRYRELNSLRRQEEELRQQLSNLGIDTRAITGIEDQIRYIDERLTQVRAKLSDD--- 606

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF-------------DGRKM 257
                        ++L+L+     K D S    + ++ +  +               R  
Sbjct: 607 -------SAELSRLELALSSIGFDKEDPSTLRKRLDFLEDFYNKLTRIRAGIRDVQARVR 659

Query: 258 DSMSRRTLIGPHR--------SDL------------------------IVDYCDKAITIA 285
           D M +                 DL                              + +TI+
Sbjct: 660 DEMIKIVRDNVGSIFEMLYPYDDLEGAGIEVTVKDKGIIGIVSEYTLYAFRPGGRKVTIS 719

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343
             S G++  + +   L+  R  ++       LL+DE   ++DE+ R A   ++T   S  
Sbjct: 720 RLSDGQRLTIALSFLLSVYRATNHNID---FLLMDEPIPYVDENIRRAFASLLTRFISEG 776

Query: 344 ---QIFMTGTDKSVFDSLNETAK 363
              Q+ +T   + + + +   A+
Sbjct: 777 LINQVIITTQSEGLVNDIVNAAR 799


>gi|229031823|ref|ZP_04187811.1| DNA repair protein recN [Bacillus cereus AH1271]
 gi|228729441|gb|EEL80430.1| DNA repair protein recN [Bacillus cereus AH1271]
          Length = 600

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 109/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 23  LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 78  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +   ++   
Sbjct: 133 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGDRIVKQLS-IYQNVY 188

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 230 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNIR 270


>gi|218899001|ref|YP_002447412.1| chromosome segregation SMC protein [Bacillus cereus G9842]
 gi|218543105|gb|ACK95499.1| chromosome segregation SMC protein [Bacillus cereus G9842]
          Length = 1189

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 106/334 (31%), Gaps = 59/334 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +            +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKDEEAKMSTDLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           KL   R+   +     T        LIV+  +KA
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|162455965|ref|YP_001618332.1| hypothetical protein sce7683 [Sorangium cellulosum 'So ce 56']
 gi|161166547|emb|CAN97852.1| hypothetical protein sce7683 [Sorangium cellulosum 'So ce 56']
          Length = 428

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 13/116 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRR 58
           ++I  + +  FR +A+  L  D   T+ VG NG GKT+ L+AI  L       PGR  R 
Sbjct: 1   MRISSIRLQNFRGFAACTLSLDRPLTVLVGVNGAGKTSTLDAIVRLLGVTNRVPGRAKRL 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
              AD  R  +         ++ +      +     +  R  R + +N  + R   
Sbjct: 61  LVDAD-IRRDAAGC-----EIDMVGTTNGATFHTGIQLARGGRQV-VNTTLPRRAG 109


>gi|91773464|ref|YP_566156.1| condensin subunit Smc [Methanococcoides burtonii DSM 6242]
 gi|91712479|gb|ABE52406.1| condensin subunit SMC [Methanococcoides burtonii DSM 6242]
          Length = 1174

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 99/278 (35%), Gaps = 36/278 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK +    F+++   +++ F    T   G NG GK+NI++ I F   LS  R  R   
Sbjct: 1   MYIKEIEFINFKSFGKKVKIPFFDDFTTISGPNGSGKSNIIDGILFVLGLSNSRTLRAEK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKL---ETRDDRSVRC--------LQINDVV 109
             D+   G  +    FA+V       D  + +   E    R +R            N   
Sbjct: 61  LTDLIYNGDKAKRPDFAQVTIKFDNTDREMPVDADEVIISRKIRETDNGYYSYFYFNGKA 120

Query: 110 IRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
           +  + EL+ +L  + + P          + RI +    ERR+ +D +    +        
Sbjct: 121 V-SLTELHNYLSKARVTPEGYNVVMQGDVTRIITMTPNERRKIIDEIAGVAEFD-----N 174

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI--NALSSLIMEYVQK 218
             +R +     +             +E Q+     K+ + R + +   AL    M++   
Sbjct: 175 KRDRALNELEIVRERVERADILIEEVEKQL----EKLKLERDQAVKYQALKQEKMKFEGF 230

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
                +K +     +   D SF    +E  +   + RK
Sbjct: 231 VLLSKLKDAKVELENVDKDISFKKEVQEKLQLSIEERK 268


>gi|76152544|gb|AAX24235.2| SJCHGC07985 protein [Schistosoma japonicum]
          Length = 194

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF-RRA 59
           + IK L I  F++Y     +  FD Q     G NG GK+NIL+AI FL         R A
Sbjct: 10  MYIKSLVIDGFKSYCQRTEIDGFDPQFNAITGLNGSGKSNILDAICFLLGITNLSHVRAA 69

Query: 60  SYADVTRIGSPSFF------STFARVE------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++      +        + F  V+      G E   +++I  +       + L IN 
Sbjct: 70  NLHELVYKCGQAGINKATVSAVFDNVDKSQSPYGYEQFDELTITKQIVVGGRNKYL-ING 128

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
                    +    +   V +   +    
Sbjct: 129 TNATTTRVHDLFHSVQLNVNNPHFLIMQG 157


>gi|5541713|emb|CAB51218.1| chromosome-associated protein-E homolog (fragment) [Arabidopsis
           thaliana]
          Length = 317

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 18/125 (14%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA+  +V  FD       G NG GK+NIL++I F   ++  +  R A
Sbjct: 1   MHIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          V            G E  ++I++  +       + L IN 
Sbjct: 61  NLQELVYKQGQAGITRATVSVTFDNSERNRSPLGHEDHSEITVTRQIVVGGKNKYL-ING 119

Query: 108 VVIRV 112
            + + 
Sbjct: 120 KLAQP 124


>gi|170590714|ref|XP_001900116.1| SMC proteins Flexible Hinge Domain containing protein [Brugia
          malayi]
 gi|158592266|gb|EDP30866.1| SMC proteins Flexible Hinge Domain containing protein [Brugia
          malayi]
          Length = 1208

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 1  MTNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRG 55
          MT  ++IK + I  F++YA  ++   FDAQ     G NG GK+NIL+AI F   +S    
Sbjct: 1  MTAGMRIKRIEIDGFKSYAQRQIIDGFDAQFNAITGLNGSGKSNILDAICFVLGISNLSQ 60

Query: 56 FRRASYADVT-RIGSPSFFSTFARV 79
           R A  +D+  + G          +
Sbjct: 61 VRAAQLSDLVYKQGQAGISKATVTI 85


>gi|122890021|emb|CAM14005.1| structural maintenance of chromosomes 2 [Mus musculus]
          Length = 471

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 98/280 (35%), Gaps = 34/280 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +      +M  ++  +  +
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE--YQKVMREIEHLSRLY 234

Query: 224 IKLSLTGFLDGKFDQSFCALKE------EYAKKLFDGRKM 257
           I        D K ++S   LKE         + L +  K 
Sbjct: 235 IAYQFLRAEDTK-ERSAGELKEMQDKIVNLQEVLSENEKK 273


>gi|91088785|ref|XP_967679.1| PREDICTED: similar to structural maintenance of chromosomes protein
           1A [Tribolium castaneum]
 gi|270011628|gb|EFA08076.1| hypothetical protein TcasGA2_TC005672 [Tribolium castaneum]
          Length = 1222

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
           ++K + +  F++Y     +         +G NG GK+N ++AISF+   +    R    +
Sbjct: 4   RLKHIEVENFKSYKGHRIIGPLKPFNAVIGPNGSGKSNFMDAISFVMGEKTQSLRVKRLS 63

Query: 63  DVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           D+   G+      S  ++ A V  ++  +   I  +     S    +IN  V+   + L 
Sbjct: 64  DLI-HGAAISKPISRSASVAAVFVLDEESGKEICFQRSVQGSSSEYRINGTVVSNNEYLT 122

Query: 118 KH 119
           + 
Sbjct: 123 EL 124


>gi|317508545|ref|ZP_07966210.1| RecF/RecN/SMC N terminal domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316253171|gb|EFV12576.1| RecF/RecN/SMC N terminal domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 774

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + ++ L +  F+++AS   LVF+   T  VG NG GK+NI +A+S++      +  R A 
Sbjct: 1   MHLRSLTLKGFKSFASPTTLVFEPGITAVVGANGSGKSNIADALSWVMGEQGAKSLRGAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I         R  R       IN    R
Sbjct: 61  MDDVIFAGTSKRPALGRAEVTLVIDNADGALPIDYTEVAVTRRMYRDGGGEYLINGDSCR 120

Query: 112 VVD 114
           ++D
Sbjct: 121 LMD 123


>gi|152983078|ref|YP_001352718.1| hypothetical protein mma_1028 [Janthinobacterium sp. Marseille]
 gi|151283155|gb|ABR91565.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 605

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 118/383 (30%), Gaps = 105/383 (27%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--------- 55
           + +  LNI+ FR     +L F A   + VG N VGK+ +++A+  L  G+          
Sbjct: 1   MHLAELNITNFRKLRDAKLRFQAGLNVLVGANNVGKSAVVDALRALLAGQEEPYPRLDVA 60

Query: 56  --FRRA------------SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101
              R A             +  + R     F +  A   G +G  +I I +   D     
Sbjct: 61  DRHRPAEGEPEGDIDFHYVFRGLDRDDEADFLA--ALKAGGDGQMEIHIHVRYFDADKTG 118

Query: 102 CLQI-----NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
             ++     +   + ++ ++ ++LR  +L P    +       R                
Sbjct: 119 RFRVKRWCGDHEDVPLLSDMMENLRGVYLQP----LRDASQSLRP--------------- 159

Query: 157 RRMIDFERLMRGRNRLLTEGYFDS---SWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
            R     RL+     LLT+        +    ++ ++ +    I+           S I 
Sbjct: 160 SRNSQLSRLL----HLLTDDAGRDGINAALQKLDEELKQHAPMIST---------QSAIA 206

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
                     +K +LT  L                         D     + +       
Sbjct: 207 TRHGDMLGEQLKQALTVGLSAS----------------------DFQRLSSRLSLSVDQF 244

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            ++                 ++ + + L+   L  NT      L+++E  AHL    +  
Sbjct: 245 EIEQNGLGFNN---------LIFMAVVLSE--LAKNTDATYRGLIVEEPEAHLHPQLQAV 293

Query: 334 LFRIVTDIGS-------QIFMTG 349
           L R +  + +       Q+F+T 
Sbjct: 294 LLRYLASLQAVAGEKPVQLFVTS 316


>gi|282900775|ref|ZP_06308715.1| hypothetical protein CRC_02596 [Cylindrospermopsis raciborskii
          CS-505]
 gi|281194305|gb|EFA69262.1| hypothetical protein CRC_02596 [Cylindrospermopsis raciborskii
          CS-505]
          Length = 360

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA----SYA 62
          I  L +  F  +  +++ F  +  + +G NG GKT++L+A  FLS      +     S  
Sbjct: 2  ITHLELKNFMAFTDVKIDFSPKINVIIGKNGTGKTHLLKAAYFLSGVAPLFKNNSHISDK 61

Query: 63 DVTR 66
          ++ +
Sbjct: 62 ELVK 65


>gi|322701334|gb|EFY93084.1| structural maintenance of chromosomes 5 smc5 [Metarhizium acridum
           CQMa 102]
          Length = 1119

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 83/261 (31%), Gaps = 20/261 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
            I  +++  F  Y            + +G NG GK++++ AI  L  G       R  S 
Sbjct: 76  AIVRVSVQNFVTYEKAEFFPGPHLNMVIGPNGTGKSSLVCAIC-LGLGYSPKHLGRAGSV 134

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119
            +  + G           +     ++  IK++ R +++ +   +N      + + EL K 
Sbjct: 135 KEFVKHGKDIATIEIELQKKPRDRSNYVIKVQIRREQNSQKWWLNGKETSHKRIQELMKS 194

Query: 120 LRISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM-IDFERLMRGRNRLL 173
           L+I        +P   R+    +      L   + A  P          + + + +  L 
Sbjct: 195 LKIQVDNLCQFLPQD-RVVEFAACTPVDLLHETLRAAAPEEMLLWQSQLQEMHKEKKGLA 253

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
              + D      +E +   L   ++  R          I E VQ      +    +   D
Sbjct: 254 DAVHSDVDALRILENRQQGLQADVDRIRER------EEIQEKVQNLQSALVFAKYSEARD 307

Query: 234 GKFDQSFCALKEEYAKKLFDG 254
                     + E A +  + 
Sbjct: 308 NHGKARDRKKEAERALQRLES 328


>gi|319939365|ref|ZP_08013725.1| chromosome segregation protein SMC [Streptococcus anginosus
           1_2_62CV]
 gi|319811351|gb|EFW07646.1| chromosome segregation protein SMC [Streptococcus anginosus
           1_2_62CV]
          Length = 1177

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 107/290 (36%), Gaps = 36/290 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   +++FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVIFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNKDRFIQQAADEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVE-MINALSSLIMEYV 216
             +      L       Y   S    +E Q   A+  +K++  R    ++ L + I    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELDSQVKPLEKQATTAKQFLKLDEERRALYLDVLIAQIKGNK 238

Query: 217 QKENFPHIKL-----SLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSM 260
            + N    +L     SL+ +   +   +   AL +E    L      D  
Sbjct: 239 TQLNDTEERLVGIQQSLSAYYSKRDQLEQENALLKEKRHDLQKQMADDQA 288



 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 22/163 (13%)

Query: 202  VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ +     +              LS    L    ++    +KE +       R+   ++
Sbjct: 982  LDAVEQFEEVSQRLHFLNTQRDDVLSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVT 1041

Query: 262  RRTLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARL 306
             R + G   +DLI+   D               K  ++   S GE+ +  + +  +  R+
Sbjct: 1042 FRQMFGGGSADLILTEGDLLTAGVEISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV 1101

Query: 307  ISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFM 347
                    P ++LDE+ A LDE         +   D  SQ  +
Sbjct: 1102 -----KTIPFVILDEVEAALDEANVKRFGDYLNRFDKDSQFIV 1139


>gi|296123944|ref|YP_003631722.1| SMC domain protein [Planctomyces limnophilus DSM 3776]
 gi|296016284|gb|ADG69523.1| SMC domain protein [Planctomyces limnophilus DSM 3776]
          Length = 653

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 8/70 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62
          +KI  + I  FR++    + FD  +T FVG NG GK+ IL A++       FR +S +  
Sbjct: 1  MKISQVRIQNFRSFRDETVHFD-NYTCFVGSNGSGKSTILMALNVF-----FRNSSSSVT 54

Query: 63 DVTRIGSPSF 72
          DV  +G+  F
Sbjct: 55 DVVNLGAEDF 64


>gi|257454406|ref|ZP_05619668.1| SMC domain protein [Enhydrobacter aerosaccus SK60]
 gi|257448172|gb|EEV23153.1| SMC domain protein [Enhydrobacter aerosaccus SK60]
          Length = 1215

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 21/131 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K L ++ F+++A+     F    T  VG NG GK+N+++AI ++   S  +  R  +
Sbjct: 1   MRLKQLKLAGFKSFANPTTFHFPKTITAIVGPNGCGKSNVIDAIRWVLGESSAKQLRGGA 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC---------L 103
            +DV   G+         S    F    G +G + I   L    + SVR           
Sbjct: 61  MSDVIFAGTQEKSAKSLASVELVFEHTRGEDGKSGIHHALNLYQELSVRRQINKEGKSDY 120

Query: 104 QINDVVIRVVD 114
            IN   +R  D
Sbjct: 121 FINGTKVRRRD 131


>gi|228909673|ref|ZP_04073496.1| Chromosome partition protein smc [Bacillus thuringiensis IBL 200]
 gi|228849962|gb|EEM94793.1| Chromosome partition protein smc [Bacillus thuringiensis IBL 200]
          Length = 1189

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 106/334 (31%), Gaps = 59/334 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +            +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKDEEAKMSTDLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           KL   R+   +     T        LIV+  +KA
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|118479365|ref|YP_896516.1| DNA repair protein [Bacillus thuringiensis str. Al Hakam]
 gi|118418590|gb|ABK87009.1| DNA replication and repair protein RecN [Bacillus thuringiensis
           str. Al Hakam]
          Length = 600

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 23  LSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 77

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 78  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 132

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 133 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 188

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 189 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 229

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ N    +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 230 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 270


>gi|304320000|ref|YP_003853643.1| chromosome segregation protein [Parvularcula bermudensis HTCC2503]
 gi|303298903|gb|ADM08502.1| chromosome segregation protein [Parvularcula bermudensis HTCC2503]
          Length = 1157

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 40/232 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           ++ + L ++ F+++            T  VG NG GK+N+LEA+ ++         R   
Sbjct: 1   MEFQRLRLTGFKSFVEPTDFEIRPGLTGIVGPNGCGKSNLLEALRWVMGATSAKALRAGG 60

Query: 61  YADVTRIGS---------PSFFSTFARVEGMEGL-----------ADISIKLETRDDRSV 100
             DV   GS         P  ++  A   G E              ++S ++  + + + 
Sbjct: 61  MEDVIFAGSGTAERTGRPPRQWAEVALQIGNETRTAPDAYNDQPLIEVSRRITKKAEGTQ 120

Query: 101 RCLQINDVVIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR---MVF 149
              +IN   +R  D   L          P++ R      + +     RR+FL+    +  
Sbjct: 121 STYRINGKEVRAKDVQLLFADGATGANSPALVRQGQVSDLINAKPENRRKFLEEAAGVAG 180

Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
               RH   +      ++G ++ L               Q+A    +    R
Sbjct: 181 LYTRRHEAELR-----LKGASQNLERLDDVLGELEQQRGQLARQARQAVRYR 227


>gi|326791394|ref|YP_004309215.1| chromosome segregation protein SMC [Clostridium lentocellum DSM
           5427]
 gi|326542158|gb|ADZ84017.1| chromosome segregation protein SMC [Clostridium lentocellum DSM
           5427]
          Length = 1196

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 65/383 (16%), Positives = 128/383 (33%), Gaps = 67/383 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +  + I  F+++  +++L      T  +G NG GK+N+ +AI   L     +  R + 
Sbjct: 1   MYLDKIEIHGFKSFGDAVKLNIPKGITGVIGPNGSGKSNVADAIRWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+       +      ++  +    I    I ++ R  RS      IN    R
Sbjct: 61  MEDIIFAGTEKRKSLGYAEVALTIKNPDETVRIAYTEIVIKRRVYRSGESEYFINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +DR+ S    ERR   +         ++ R  + E
Sbjct: 121 LKDVQELFMDTGIGKDGYSIIGQGQIDRVLSSKPEERRTLFEEAAGIYK--YKVRRQEAE 178

Query: 164 RLM-RGRNRL----------------LTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           R + + R  L                L      ++    ++ ++  + + I I     I 
Sbjct: 179 RKLEKQRENLTRLQDIIGEIENRLSPLEREAGKTTQFLRLKDELKGIDINIFIY---EIE 235

Query: 207 ALSSLIMEYVQKENFPHIKLS---LTGFLDGKFDQSFCALKEEYAKKLFD------GRKM 257
            L   I E   K      +L           + + S+   ++E   +  +       ++ 
Sbjct: 236 RLEKEIQELSCKMIATDEELKDKNTQYLSKCELNDSYKKQRDELYHQTENLIEAISEKEK 295

Query: 258 DSMSRRTLIGPHRSDLI--------VDYCDKAITIAHGSTGEQKVVL----VGIFL--AH 303
           D   +++ +  +    +        V    K  T AH S  E++  L      + L  A 
Sbjct: 296 DQERKQSQLTINAEKKVNIERLLEQVYEDQKNQTNAHESKIEKRSFLETKRTALELEKAS 355

Query: 304 ARLISNTTGFAPILLLDEISAHL 326
              I         LL++E  +HL
Sbjct: 356 KMAIIEQEEEKINLLMEE-LSHL 377


>gi|315221418|ref|ZP_07863339.1| segregation protein SMC [Streptococcus anginosus F0211]
 gi|315189537|gb|EFU23231.1| segregation protein SMC [Streptococcus anginosus F0211]
          Length = 1177

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 107/290 (36%), Gaps = 36/290 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   +++FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVIFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVIVVLDNKDRFIQQAADEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVE-MINALSSLIMEYV 216
             +      L       Y   S    +E Q   A+  +K++  R    ++ L + I    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELDSQVKPLEKQATTAKQFLKLDEERRALYLDVLIAQIKGNK 238

Query: 217 QKENFPHIKL-----SLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSM 260
            + N    +L     SL+ +   +   +   AL +E    L      D  
Sbjct: 239 TQLNDTEERLVGIQQSLSAYYSKRDQLEQENALLKEKRHDLQKQMADDQA 288



 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 22/163 (13%)

Query: 202  VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ +     +              LS    L    ++    +K+ +       R+   ++
Sbjct: 982  LDAVEQFEEVSQRLHFLNTQRDDVLSAKNLLLETIEEMNDEVKDRFKTTFEAIRESFKVT 1041

Query: 262  RRTLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARL 306
             R + G   +DLI+   D               K  ++   S GE+ +  + +  +  R+
Sbjct: 1042 FRQMFGGGSADLILTEGDLLTAGVEISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV 1101

Query: 307  ISNTTGFAPILLLDEISAHLDEDKRNALFRIVT--DIGSQIFM 347
                    P ++LDE+ A LDE         +   D  SQ  +
Sbjct: 1102 -----KTIPFVILDEVEAALDEANVKRFGDYLNRFDKDSQFIV 1139


>gi|116283838|gb|AAH32705.1| SMC2 protein [Homo sapiens]
          Length = 781

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 30/274 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +     ++ E    E+   
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE-YQKVMREI---EHLSR 232

Query: 224 IKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           + ++    L +    +S   LKE   K +    +
Sbjct: 233 LYIAYQFLLAEDTKVRSAEELKEMQDKVIKLQEE 266


>gi|121534490|ref|ZP_01666313.1| DNA repair protein RecN [Thermosinus carboxydivorans Nor1]
 gi|121306983|gb|EAX47902.1| DNA repair protein RecN [Thermosinus carboxydivorans Nor1]
          Length = 570

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 30/201 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L ++ F      ++ F     I  G+ G GK+ +++A   L+   G R +  AD+ R
Sbjct: 2   LKSLTVTNFALIDQAQVEFAPGLNILTGETGAGKSILIDA---LNTLLGSRTS--ADLIR 56

Query: 67  IGSPSF-FSTFARVEGMEGLA-----------DISIKLETRDDRSVR-CLQIND--VVIR 111
            G   F       +    G+A           +  + +  R  RS +  + +N   V + 
Sbjct: 57  SGCEYFRVEAVFEISAAGGVAALLEEQGIPIEEGQLIISRRYTRSGKNTIIVNGCQVPLS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG--- 168
           V+ EL   L        M       +M R      +V + D R   ++ ++ R+ +    
Sbjct: 117 VLRELGGKLV------DMHGQHENQTMLRPESYLPLVDSSDSRIEAKLAEYSRIYQEWSG 170

Query: 169 -RNRLLTEGYFDSSWCSSIEA 188
            RN LL            ++ 
Sbjct: 171 VRNELLKAEKLARERMQRLDM 191


>gi|81300818|ref|YP_401026.1| hypothetical protein Synpcc7942_2009 [Synechococcus elongatus PCC
           7942]
 gi|81169699|gb|ABB58039.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 922

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 51/236 (21%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS--FLSPGRGFRRASYA 62
           ++I+ +++  F+ +A     F        G+NG GKT+ILEAI+        G+R+    
Sbjct: 1   MEIRSVSLRNFKTHAEAAFEFRLGVNAICGENGAGKTSILEAIAWTLFDFDSGYRK---E 57

Query: 63  DVTRIGSPSFFSTFARVEGMEGLA--------------------DISIKLETRDDRSVRC 102
           ++ R G  +   T   V   +G                      ++ +KL+  ++ S   
Sbjct: 58  ELRRQGESNTSVTVGLVSARDGRYYEVQRRSFKNRPDSYQIYDPELGLKLDNLENVSAAR 117

Query: 103 LQI-NDVVIRVVDELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
           L + + +  R   +L++       +P       F     +RRR  D ++          +
Sbjct: 118 LWLCDHLGFRAGMDLSRLFAEVIGIPQGTFTADFLKTPSDRRRIFDPILG---------L 168

Query: 160 IDFERLMRGRNRLLTEG--------------YFDSSWCSSIEAQMAELGVKINIAR 201
             +    R    L                    + +   ++E Q+ E+   +   R
Sbjct: 169 ESYRDAHRQSIDLQRYAEGQQQAIAQQVAILSAEVADLPTLEQQLQEISQSLEQQR 224


>gi|56752095|ref|YP_172796.1| hypothetical protein syc2086_c [Synechococcus elongatus PCC 6301]
 gi|56687054|dbj|BAD80276.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 922

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 51/236 (21%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS--FLSPGRGFRRASYA 62
           ++I+ +++  F+ +A     F        G+NG GKT+ILEAI+        G+R+    
Sbjct: 1   MEIRSVSLRNFKTHAEAAFEFRLGVNAICGENGAGKTSILEAIAWTLFDFDSGYRK---E 57

Query: 63  DVTRIGSPSFFSTFARVEGMEGLA--------------------DISIKLETRDDRSVRC 102
           ++ R G  +   T   V   +G                      ++ +KL+  ++ S   
Sbjct: 58  ELRRQGESNTSVTVGLVSARDGRYYEVQRRSFKNRPDSYQIYDPELGLKLDNLENVSAAR 117

Query: 103 LQI-NDVVIRVVDELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
           L + + +  R   +L++       +P       F     +RRR  D ++          +
Sbjct: 118 LWLCDHLGFRAGMDLSRLFAEVIGIPQGTFTADFLKTPSDRRRIFDPILG---------L 168

Query: 160 IDFERLMRGRNRLLTEG--------------YFDSSWCSSIEAQMAELGVKINIAR 201
             +    R    L                    + +   ++E Q+ E+   +   R
Sbjct: 169 ESYRDAHRQSIDLQRYAEGQQQAIAQQVAILSAEVADLPTLEQQLQEISQSLEQQR 224


>gi|84385714|ref|ZP_00988745.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01]
 gi|84379694|gb|EAP96546.1| hypothetical protein V12B01_26309 [Vibrio splendidus 12B01]
          Length = 842

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
           K+  + ++ FR Y    +      T+ VG+NG GKT+ILEAIS
Sbjct: 421 KVNQIKLTNFRGYTDFTIPIHESLTVLVGENGAGKTSILEAIS 463


>gi|49481963|gb|AAT66693.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A87]
          Length = 573

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 92/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL   FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSXSFDKGLTVLXGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           +  A++ I +                   +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCCQKCAEVGIDVSEGMVVLRRDILANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   ++ E+   L           +           LD    A        +  +  +
Sbjct: 112 KLVTTAILREVGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGA---EMAEALARYRAV 166

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
                 L+ +        S  E QMA         R++++       +E    E     +
Sbjct: 167 YEQHEALVKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQATLELGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + A+++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYSAIQKSYEALSGEGRGLDSI 248


>gi|253700544|ref|YP_003021733.1| SMC domain protein [Geobacter sp. M21]
 gi|251775394|gb|ACT17975.1| SMC domain protein [Geobacter sp. M21]
          Length = 987

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++I  +++   +++    + F     +  G NG GK+ I EAI +   G  
Sbjct: 1  MRIISVHLKNIKSHRDKEIAFSPGINVLSGANGSGKSTIFEAIGYALFGVS 51



 Score = 36.4 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 50/156 (32%), Gaps = 28/156 (17%)

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
             + E GV +   R ++   +SS + E  ++E                 +  +    +  
Sbjct: 827 EALKEQGVLVKFLRNQVFKNVSSQLSERFREEISFRADRIYRSICASDEELVWGENYQVV 886

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
            K + +G+  +             D               S G+    +V + LA  + I
Sbjct: 887 LKDMAEGQVRER----------SDD-------------QLSGGQMMSAVVALRLALLQTI 923

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
                   I   DE +++LD ++R  L R    I  
Sbjct: 924 GAR-----IAFFDEPTSNLDAERRENLARAFRAIDV 954


>gi|125718367|ref|YP_001035500.1| structural maintenance of chromosome protein (chromosome
           segregation ATPase) [Streptococcus sanguinis SK36]
 gi|125498284|gb|ABN44950.1| Structural maintenance of chromosome protein (chromosome
           segregation ATPase), putative [Streptococcus sanguinis
           SK36]
          Length = 1178

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRTIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            K+  A  E +  +   +  Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 EKLTKA-EEDLTNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKESQFIV 1140


>gi|90425031|ref|YP_533401.1| SMC protein-like [Rhodopseudomonas palustris BisB18]
 gi|90107045|gb|ABD89082.1| SMC protein-like [Rhodopseudomonas palustris BisB18]
          Length = 695

 Score = 61.1 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 65/394 (16%), Positives = 124/394 (31%), Gaps = 68/394 (17%)

Query: 5   IKIKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           + I  + I  FR +     +  L      T  VG+N  GKT +++A+  +   R      
Sbjct: 1   MYISEIRIENFRLFGVGNDTFVLRLKPGLTALVGENDGGKTAVIDALRLVLGTR------ 54

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             ++ R+ +  F       +  +    ++ K  T  DR+     +  +    V E    +
Sbjct: 55  DQELIRVEATDFHQAPGGAQAEQICIRLTFKALTVHDRAAFAEYLTYLPGGDVTETALII 114

Query: 121 RISW-----------LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
             +             +PS   I +G + +           +   + R + D ER M   
Sbjct: 115 TWNARRNTKEGVSRRTLPS--EIRTGAAGDGPVLEGAARALLTATYLRPLRDAERAM--- 169

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
                      S  S    Q+ +   +I    V      S                 S  
Sbjct: 170 ------SAGRGSRLS----QILQHTKEIKETGVAFDPKASPPADPAKLSVLGVGDYASFL 219

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD----------LIVDYCD 279
                   ++   L +E+ K L      D ++ R  +   R D          L +    
Sbjct: 220 FDGSAGIKEARKKLNDEFLKPL--SFANDLLNARIAVSGSRDDAVRLRQLLEKLELALSA 277

Query: 280 KAITIAHGSTGEQKVVLVG----IFLA-HARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
              T A  + G      +G    +F+A    L++  +   P+LL++E  AHL   ++  L
Sbjct: 278 SDDTDASYTRG------LGSNNLLFMACELLLLAAESDGFPLLLIEEPEAHLHPQRQLRL 331

Query: 335 FRIVTD---------IGSQIFMTGTDKSVFDSLN 359
              + +            QI +T    ++   + 
Sbjct: 332 MSFLQEQADGVRADGQQIQILVTTHSPNLASDIR 365


>gi|327401278|ref|YP_004342117.1| chromosome segregation protein SMC [Archaeoglobus veneficus SNP6]
 gi|327316786|gb|AEA47402.1| chromosome segregation protein SMC [Archaeoglobus veneficus SNP6]
          Length = 1170

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 64/165 (38%), Gaps = 22/165 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRA 59
           + IK + I  F+++   + + F    T+  G NG GK+NI+++I F     +  +  R  
Sbjct: 1   MHIKKIVIKNFKSFGKKVEIPFYRGFTVISGPNGSGKSNIVDSILFCLGLSTSTKALRAE 60

Query: 60  SYADVT------RIGSPSFFSTFARVEGM---EGLADISIKLETRDDRSVRCLQINDV-- 108
              D+       R G       F   +     EG   I+ ++   D        IN    
Sbjct: 61  RLTDLVFNSNGKRSGEAEVSIIFDNSDSKLPFEGDVTITRRIRLTDRGHYSYYYINGKSC 120

Query: 109 ----VIRVVDE--LNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147
               + R++ +  ++       +   + RI     ++RR+ +D +
Sbjct: 121 SLSEIQRLLSDAGIHGDAYNVIMQGDVTRITEMTPLQRRKIIDDI 165


>gi|164688566|ref|ZP_02212594.1| hypothetical protein CLOBAR_02211 [Clostridium bartlettii DSM
           16795]
 gi|164602979|gb|EDQ96444.1| hypothetical protein CLOBAR_02211 [Clostridium bartlettii DSM
           16795]
          Length = 1110

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 61/172 (35%), Gaps = 21/172 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++ +   + F+   T  VG NG GK+NI +A+   L     +  R   
Sbjct: 7   VHLKRLELKGFKSFPTKTEINFNEGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 66

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+       +      ++  +   +I     T   R+ R       +ND   R
Sbjct: 67  LEDVIFAGTIDKKPMNYCEVALTIDNSDEKLNIDFSEVTIKRRAYRNGESGFFLNDKACR 126

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           + D         + K          +D I S     RR+  D        R+
Sbjct: 127 LKDIKELLLDTGIGKDGYSIIEQGKVDEILSNNPANRRKVFDEACGISKYRY 178


>gi|330040360|ref|XP_003239874.1| structural maintenance of chromosomes 3 [Cryptomonas paramecium]
 gi|327206799|gb|AEA38976.1| structural maintenance of chromosomes 3 [Cryptomonas paramecium]
          Length = 1033

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          + I  + +  F++Y              +F G NG GKT++LEAI  +   + FR
Sbjct: 1  MHIIEVKLFNFKSYRHYIFKKHLSPGINVFTGYNGSGKTSLLEAIGVIFINQKFR 55


>gi|197118682|ref|YP_002139109.1| DNA repair exonuclease SbcCD subunit C [Geobacter bemidjiensis
          Bem]
 gi|197088042|gb|ACH39313.1| DNA repair exonuclease SbcCD, C subunit, putative [Geobacter
          bemidjiensis Bem]
          Length = 987

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 23/51 (45%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++I  + +   +++    + F     +  G NG GK+ I EAI +   G  
Sbjct: 1  MRIISVQLKNIKSHRDKEIAFSPGINVLSGANGSGKSTIFEAIGYALFGVS 51


>gi|314936604|ref|ZP_07843951.1| SMC family, C- domain protein [Staphylococcus hominis subsp.
           hominis C80]
 gi|313655223|gb|EFS18968.1| SMC family, C- domain protein [Staphylococcus hominis subsp.
           hominis C80]
          Length = 1189

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 102/279 (36%), Gaps = 39/279 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDTIGFKSFADRTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLET----------RDDRSVRCLQINDVV 109
             D+   G+       +A V+     +   +++E           R   S   L  +   
Sbjct: 62  MEDIIFSGAEHRQAQNYAEVQLKLDNSTRELQIEADDVIVTRRLYRSGESEYYLNNDRAR 121

Query: 110 IRVVDELN-----KHLRISWLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           +R + EL           S +    +D I +   ++RR+ ++     +            
Sbjct: 122 LRDITELFLDSGLGKEAFSIISQGRVDEILNAKPVDRRQIIEESAGVL------------ 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
           +  + +   L +        S +E  + +L       RVE + A +S+  EY+Q  +   
Sbjct: 170 KYKKRKTESLQKLGHTEDNLSRVEDILYDL-----EGRVEPLKAEASIAKEYLQLSKEME 224

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           H  + +T     ++D+    L E          + +   
Sbjct: 225 HSDVVVTVHDINQYDEENRQLDERLNHLKSQQAEKEGQQ 263


>gi|118587505|ref|ZP_01544929.1| chromosome segregation SMC protein [Oenococcus oeni ATCC BAA-1163]
 gi|118431956|gb|EAV38698.1| chromosome segregation SMC protein [Oenococcus oeni ATCC BAA-1163]
          Length = 1184

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/225 (21%), Positives = 87/225 (38%), Gaps = 28/225 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +K+K L I+ F+++A    + F    T  VG NG GK+NI+EAI ++      +G R  +
Sbjct: 1   MKLKSLEINGFKSFADKTVIDFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKGLRGNT 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
            ADV   GS         S    ++  +         +++  R  R+      IN V  R
Sbjct: 61  MADVIFGGSKKRPALGRASVSMTIDNSDHYLHSAFDEVQISRRLYRNGDAEYLINGVKSR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+  + +RR  ++ +       +++     +
Sbjct: 121 LKDITDLFVDTGLGRESFSIINQGKVEAIFNAKAEDRRAIIEDVAGVFK--YKQNKNKSQ 178

Query: 164 RLMRGR----NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204
             +       NRLL      S     +E Q A+   +    R + 
Sbjct: 179 NQLLQTQENLNRLLDIIKEISDRLQPLEKQ-ADEAEEFLSLRKQF 222


>gi|225856913|ref|YP_002738424.1| chromosome segregation protein SMC [Streptococcus pneumoniae P1031]
 gi|225724779|gb|ACO20631.1| chromosome segregation protein SMC [Streptococcus pneumoniae P1031]
          Length = 1179

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELTQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|328864918|gb|EGG13304.1| structural maintenance of chromosome protein [Dictyostelium
           fasciculatum]
          Length = 1153

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 92/305 (30%), Gaps = 39/305 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYAD 63
           I+ +++  F  +    + F        G+NG GK+ +L A+      +     R    AD
Sbjct: 113 IESISVENFMCHRHFEIKFGPNVNFISGENGSGKSALLVALIICLGAKSGTTNRGHKLAD 172

Query: 64  VTRIGS-PSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           + +  +  +  +   R +G E          I I+ +            +    +V+   
Sbjct: 173 LVKNDANQAIITVKLRNKGPEAHLPEEFGPSIIIERKISRSGGGGYKLKDHTGKKVISTK 232

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              L +      +  I           +  ++              ++     N  LT  
Sbjct: 233 FSDLAVIL---ELFNIQIENP------MAILMQDTSREFLNTSRPQDKY----NLFLTAT 279

Query: 177 YFDSSWCSSI---------EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
             D      +         E ++ + G+ I     + + ALS    +     +       
Sbjct: 280 QLDQMKKDYLFINDQIKGSEQELDKKGIIIKEM-EKKVEALSKEFKDLQAVVDLEQKVQH 338

Query: 228 LTGFLDGKF----DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
           L   L   +    +Q+    K   A+ + +  K +  +    IG   + +  D  DK   
Sbjct: 339 LKEQLAWSYVFGVEQTIVKKKAALAQIIQE--KNNIQNETQGIGQQINAITNDMADKRKK 396

Query: 284 IAHGS 288
           I   S
Sbjct: 397 IEELS 401


>gi|169338111|ref|ZP_02863218.1| chromosome partition protein smc [Clostridium botulinum C str.
           Eklund]
 gi|169294129|gb|EDS76262.1| chromosome partition protein smc [Clostridium botulinum C str.
           Eklund]
          Length = 377

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 102/278 (36%), Gaps = 32/278 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L I  F+++A    LVF    T  VG NG GK+NIL+A+ ++   +     R   
Sbjct: 1   MFLKSLEIRGFKSFADKTELVFKKGITAIVGPNGSGKSNILDAVKWVLGEQSVKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+              ++  +    I    + +  R  RS      IN    R
Sbjct: 61  MQDVIFSGTEYRKPVGLAQVTLVLDNSDEELPIDYSEVTIMRRLFRSGESEYYINSTKCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          ++ + SG   ERR  L+     +    + R  + E
Sbjct: 121 LKDIQELFMDTGIGKEGYSIIGQGKIEALLSGKPEERRSLLEEAAGIVK--FKTRKQEAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--VEMINAL-SSLIMEYVQKEN 220
           + +      L           + E ++  L  + + AR  +E+   L    +   +   +
Sbjct: 179 KRLENTENNLQRIN---DIFGTYEERLDPLKAESDKARNFLEISKKLKEKEVTLILNNID 235

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
               K++L   +  K +++   LK+ +  K    + +D
Sbjct: 236 RCKEKINL---VKEKIEETNSKLKDAFNDKNIHKKNLD 270


>gi|294495715|ref|YP_003542208.1| ATP-dependent endonuclease [Methanohalophilus mahii DSM 5219]
 gi|292666714|gb|ADE36563.1| ATP-dependent endonuclease of the OLD family [Methanohalophilus
          mahii DSM 5219]
          Length = 685

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
           + +  ++I  +R+   L L F     + VG N  GK+NI++AI  L   + 
Sbjct: 7  DLYLSKIHIENYRSIKELDLDFKKGKNVIVGKNNSGKSNIIKAIDLLLGEKS 58


>gi|159027952|emb|CAO87115.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 438

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L +  F++Y    L      T  +G N  GK+N LEAI  LS     + +   D+ R
Sbjct: 2  LTSLTLRNFKSYQEATLSLAP-ITFLIGANASGKSNALEAIRLLSWLA--KGSRLDDIER 58


>gi|332159251|ref|YP_004424530.1| chromosome segregation protein [Pyrococcus sp. NA2]
 gi|331034714|gb|AEC52526.1| chromosome segregation protein [Pyrococcus sp. NA2]
          Length = 879

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 26/43 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++I+ + +  FR++    + F     + +G NG GK+++L+AI
Sbjct: 1  MRIERVRVENFRSHKISEIEFKPGINLIIGQNGAGKSSLLDAI 43



 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           ++  L V Y      ++  S GE+  + +   LA +  +    G   +L+LDE +  LDE
Sbjct: 771 NKIKLFVVYDGVERPLSFLSGGERIALGLAFRLALSMYL---IGRINLLILDEPTPFLDE 827

Query: 329 DKRNALFRIVT---DIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
           ++R  L  I+       SQ+ +   D+ + D+  +    +R+ + 
Sbjct: 828 ERRRKLIEIMERHLKKISQVIIVSHDEELKDA-ADHVIRIRLEDG 871


>gi|218905310|ref|YP_002453144.1| DNA repair protein RecN [Bacillus cereus AH820]
 gi|218536540|gb|ACK88938.1| DNA repair protein RecN [Bacillus cereus AH820]
          Length = 579

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 117/314 (37%), Gaps = 72/314 (22%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 2   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 57  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 167

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD---SMSRRTLIGPHRSD 272
            ++ N    +L ++      F++ + AL + Y     DG+ +D   S   +     H  +
Sbjct: 209 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVRSAMGQMESITHLDE 263

Query: 273 LIVDYCDKAITIAH 286
           +  +  D      +
Sbjct: 264 VYQENHDSXANSYY 277


>gi|160888201|ref|ZP_02069204.1| hypothetical protein BACUNI_00609 [Bacteroides uniformis ATCC
          8492]
 gi|156862336|gb|EDO55767.1| hypothetical protein BACUNI_00609 [Bacteroides uniformis ATCC
          8492]
          Length = 691

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 25/46 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  +++  +RN+ +   +F+      +G+N  GKTN+  AI  +
Sbjct: 1  MYISKVSLVNYRNFENAFFLFNKGINTIIGENASGKTNLFRAIRLI 46



 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 88/269 (32%), Gaps = 44/269 (16%)

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFE- 163
           ND  ++   EL            MD    G  +  +  + R V F      R  + DF+ 
Sbjct: 161 NDKNVQR--ELMGDFDNVIFNFDMDESKYGGRIPHQLSISREVSFTFIKALRDVVSDFQD 218

Query: 164 -------RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
                   L++ ++  + E  F        +  + +   +++     + N +S  I E V
Sbjct: 219 NRKNPLLTLLKNKSEDIKEEDFKPISIKVDD--LNKSIEELDDI-QMITNNISETIKEAV 275

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL-IGPHRSDLIV 275
                P   LS+   L  + ++   +LK      LF G   +        +    ++LI 
Sbjct: 276 GTTYSPS-SLSIKSNLPSEAEKLLQSLK------LFIGEPEEDYEGGIHELSLGGANLIF 328

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                                + + L   +        A  LL++E  AH+    + ALF
Sbjct: 329 ---------------------LTLKLLEYKYRKEKDKIANFLLIEEPEAHIHTHIQKALF 367

Query: 336 RIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
             +    +QI  + T  +    ++  +  
Sbjct: 368 DKLNYTDTQIIYS-THSTHISEVSNISSM 395


>gi|322419444|ref|YP_004198667.1| SMC domain-containing protein [Geobacter sp. M18]
 gi|320125831|gb|ADW13391.1| SMC domain protein [Geobacter sp. M18]
          Length = 987

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++I  +++   +++    L F     +  G NG GK+ I EAI +   G  
Sbjct: 1  MRIVSVHLKNIKSHRDKELTFAPGINVLSGANGSGKSTIFEAIGYALFGVS 51



 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 55/163 (33%), Gaps = 11/163 (6%)

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           S      A +  +  +I+   +  I  L       + K     +  +++  L  +F +  
Sbjct: 803 SRLEGETAALRAVAAEIDKK-LAAIEELKEQAN--LVKFLRNQVFKNVSAQLSERFREEI 859

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               +   + + +    +           +   +VD   +  +    S G+    +V + 
Sbjct: 860 SFRADRIYRSICES-DEELYWGENYQVVLKD--MVDGAVRERSDDQLSGGQMMSAVVALR 916

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
           LA  + I        I   DE +++LD ++R  L +    I  
Sbjct: 917 LALLQTIGAR-----IAFFDEPTSNLDAERRENLAKAFRAIDV 954


>gi|222097620|ref|YP_002531677.1| DNA repair protein recn [Bacillus cereus Q1]
 gi|229140908|ref|ZP_04269452.1| DNA repair protein recN [Bacillus cereus BDRD-ST26]
 gi|229198301|ref|ZP_04325008.1| DNA repair protein recN [Bacillus cereus m1293]
 gi|221241678|gb|ACM14388.1| DNA repair protein RecN [Bacillus cereus Q1]
 gi|228585180|gb|EEK43291.1| DNA repair protein recN [Bacillus cereus m1293]
 gi|228642484|gb|EEK98771.1| DNA repair protein recN [Bacillus cereus BDRD-ST26]
          Length = 583

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 61/282 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
            D+E+L +     L          S  E QMA         R+++I      I +   K 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKI 212

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +     L+        F++ + AL + Y     DG+ +D++ 
Sbjct: 213 D-EENDLTEERLQISNFEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|206976260|ref|ZP_03237168.1| DNA repair protein RecN [Bacillus cereus H3081.97]
 gi|217961664|ref|YP_002340234.1| DNA repair protein RecN [Bacillus cereus AH187]
 gi|206745456|gb|EDZ56855.1| DNA repair protein RecN [Bacillus cereus H3081.97]
 gi|217064009|gb|ACJ78259.1| DNA repair protein RecN [Bacillus cereus AH187]
          Length = 579

 Score = 60.7 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 61/282 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 2   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 57  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 167

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
            D+E+L +     L          S  E QMA         R+++I      I +   K 
Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKI 208

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +     L+        F++ + AL + Y     DG+ +D++ 
Sbjct: 209 D-EENDLTEERLQISNFEKIYKALGDAYRSLSADGQGLDNVR 249


>gi|322705493|gb|EFY97078.1| structural maintenance of chromosome complex subunit SmcA
           [Metarhizium anisopliae ARSEF 23]
          Length = 1119

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 16/213 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
            I  +++  F  Y            + +G NG GK++++ AI  L  G       R  S 
Sbjct: 76  AIVRVSVQNFVTYEKAEFFPGPHLNMVIGPNGTGKSSLVCAIC-LGLGYSPKHLGRAGSV 134

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119
            +  + G           +     ++  IK++ R +++ +   +N      + + EL K 
Sbjct: 135 KEFVKHGKDIATIEIELQKKPRDRSNYVIKVQIRREQNSQKWWLNGKETSHKKIQELMKS 194

Query: 120 LRISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM-IDFERLMRGRNRLL 173
           ++I        +P   R+    +      L   + A  P          + + + +  L 
Sbjct: 195 MKIQVDNLCQFLPQD-RVVEFAACTPVDLLHETLRAAAPEEMLLWQSQLQEMHKEKKGLA 253

Query: 174 TEGYFDSSWCSSIE--AQMAELGVKINIARVEM 204
              + D      +E   Q  +  V     R E+
Sbjct: 254 DAVHSDVDALRILENRQQGLQADVDRIREREEI 286


>gi|169831439|ref|YP_001717421.1| metallophosphoesterase [Candidatus Desulforudis audaxviator MP104C]
 gi|169638283|gb|ACA59789.1| metallophosphoesterase [Candidatus Desulforudis audaxviator MP104C]
          Length = 695

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            +  L +  F+++            + +G++G GK+ I+ A+ +L      R  +  +  
Sbjct: 327 HLTHLVLENFQSHLHTEFELAPGLNVILGESGQGKSAIVRALRWLLC----REPARDEYV 382

Query: 66  RIGSPSFFSTFARVEGMEGLADISI 90
           R G+P    T    +G   + +  +
Sbjct: 383 RAGAPGCRVTAVCGDGRRLVREHRL 407


>gi|73667909|ref|YP_303924.1| chromosome segregation protein [Methanosarcina barkeri str. Fusaro]
 gi|72395071|gb|AAZ69344.1| DNA repair protein RAD50 [Methanosarcina barkeri str. Fusaro]
          Length = 1074

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 26/167 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-----RGFRRA 59
           +K+K L+I   R+Y  L   F+   T+  G NG GK+++LEA      G     + F   
Sbjct: 1   MKLKNLHIENIRSYKKLDFTFEDGVTVISGVNGSGKSSLLEACFMGLFGSKILSKDF--- 57

Query: 60  SYADVTRIGSPSFFSTFARVE-GMEGLADISIKLETRDD---RSVRCLQINDVVI----- 110
             ADV   G+ +          G + L + + +  ++ +    S   L  N   I     
Sbjct: 58  VLADVIFKGAENAKINLGFEHLGQDYLIEQAFRYSSKSENASNSKCVLYANGESIVDQAT 117

Query: 111 RVVDELNKHLRI---------SWLVPSMDRIFSGLSMERRRFLDRMV 148
           R  +E+   L +               +D + +    +R+R +D ++
Sbjct: 118 RTYEEVCSLLNMDEEAYRNCAYIRQGEIDVLINAKPKDRQRMIDGLL 164


>gi|328957312|ref|YP_004374698.1| chromosome condensation and segregation SMC ATPase [Carnobacterium
           sp. 17-4]
 gi|328673636|gb|AEB29682.1| chromosome condensation and segregation SMC ATPase [Carnobacterium
           sp. 17-4]
          Length = 1190

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 58/162 (35%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +++K ++I+ F+++A    + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MQLKRIDIAGFKSFADKTTIEFHDGVTAVVGPNGSGKSNITEAIRWVLGEQSAKNLRGGR 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             DV   GS +      A V  +    D  + LE  +    R L  N             
Sbjct: 61  MNDVIFSGSDTRKPVNLAEVTLILENEDHFLPLEFSEISITRRLHRNGESEFYLNKQACR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLD 145
           + ++      S L      I S             ERR   +
Sbjct: 121 LKDIVDLFMDSGLGKESFSIISQGKVESIFNSKPEERRAIFE 162


>gi|324328088|gb|ADY23348.1| DNA repair protein RecN [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 583

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 61/282 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
            D+E+L +     L          S  E QMA         R+++I      I +   K 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKI 212

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +     L+        F++ + AL + Y     DG+ +D++ 
Sbjct: 213 D-EENDLTEERLQISNFEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|323351216|ref|ZP_08086872.1| cell division protein Smc [Streptococcus sanguinis VMC66]
 gi|322122440|gb|EFX94151.1| cell division protein Smc [Streptococcus sanguinis VMC66]
          Length = 1178

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRVIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            K+  A  E +  +   +  Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 EKLIKA-EEDLTNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 38.0 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|309356248|emb|CAP37487.2| hypothetical protein CBG_20484 [Caenorhabditis briggsae AF16]
          Length = 673

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 1   MTNRIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           +  +  +  L I  F++Y    +    ++ T  +G NG GK+N+++AISF+   R    R
Sbjct: 46  LPGKGHLHTLEIENFKSYKGKHIIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPTSLR 105

Query: 58  RASYADVTRIGSP 70
              Y D+   G+P
Sbjct: 106 VKKYTDLI-HGAP 117


>gi|228947891|ref|ZP_04110178.1| DNA repair protein recN [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228811878|gb|EEM58212.1| DNA repair protein recN [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 583

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ N    +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 213 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|241202955|ref|YP_002974051.1| hypothetical protein Rleg_0201 [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|240856845|gb|ACS54512.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
          trifolii WSM1325]
          Length = 442

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 27/42 (64%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
          +++  L+++ FR +A+  + F +  T+ V  NG GKT +L+A
Sbjct: 3  LRLDKLSLTNFRCFANCEIEFHSGLTVLVAQNGSGKTAVLDA 44


>gi|229186417|ref|ZP_04313581.1| DNA repair protein recN [Bacillus cereus BGSC 6E1]
 gi|228597044|gb|EEK54700.1| DNA repair protein recN [Bacillus cereus BGSC 6E1]
          Length = 583

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ N    +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 213 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|255655260|ref|ZP_05400669.1| chromosome partition protein [Clostridium difficile QCD-23m63]
 gi|296451245|ref|ZP_06892985.1| chromosome segregation protein Smc [Clostridium difficile NAP08]
 gi|296880403|ref|ZP_06904366.1| chromosome segregation protein Smc [Clostridium difficile NAP07]
 gi|296259851|gb|EFH06706.1| chromosome segregation protein Smc [Clostridium difficile NAP08]
 gi|296428644|gb|EFH14528.1| chromosome segregation protein Smc [Clostridium difficile NAP07]
          Length = 1184

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 91/268 (33%), Gaps = 33/268 (12%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++     ++F    T  VG NG GK+NI +A+   L     +  R   
Sbjct: 1   MYLKRLELKGFKSFPVKTDIIFKEGITAIVGPNGSGKSNISDAVRWVLGEQSIKSLRGDK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+      ++      ++  E   ++     T   R+ R       +N+   R
Sbjct: 61  LEDVIFAGTDTKKPMNYCEVALTIDNSENQLELDFTEVTIRRRAYRNGESEFFLNNKSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D I S   + RR+  D                ++
Sbjct: 121 LKDIKEVFLDTGIGKDGYSIIEQGKVDEILSNNPLSRRKVFDEACGISK-------YRYK 173

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKIN--IARVEMINALSS-LIMEYVQK 218
           +    RN   T+   +        IE Q+  L  +       +E+   L    +  ++++
Sbjct: 174 KQEAERNLSNTKENLERIDDIYIEIENQLKPLFNQQTKAKKYLEISEKLKILEVNSFIRE 233

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEE 246
                 +LS         ++     +E+
Sbjct: 234 IEGIEKELSEVNEHRKVIEKELNEKEEQ 261


>gi|196046341|ref|ZP_03113567.1| DNA repair protein RecN [Bacillus cereus 03BB108]
 gi|225866156|ref|YP_002751534.1| DNA repair protein RecN [Bacillus cereus 03BB102]
 gi|196022811|gb|EDX61492.1| DNA repair protein RecN [Bacillus cereus 03BB108]
 gi|225790605|gb|ACO30822.1| DNA repair protein RecN [Bacillus cereus 03BB102]
          Length = 579

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 2   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 57  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 167

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ N    +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 209 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 249


>gi|196034817|ref|ZP_03102224.1| DNA repair protein RecN [Bacillus cereus W]
 gi|196041535|ref|ZP_03108827.1| DNA repair protein RecN [Bacillus cereus NVH0597-99]
 gi|301055667|ref|YP_003793878.1| DNA repair protein [Bacillus anthracis CI]
 gi|195992356|gb|EDX56317.1| DNA repair protein RecN [Bacillus cereus W]
 gi|196027523|gb|EDX66138.1| DNA repair protein RecN [Bacillus cereus NVH0597-99]
 gi|300377836|gb|ADK06740.1| DNA repair protein [Bacillus cereus biovar anthracis str. CI]
          Length = 579

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 2   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 57  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 167

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ N    +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 209 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 249


>gi|52141322|ref|YP_085507.1| DNA repair protein [Bacillus cereus E33L]
 gi|228916810|ref|ZP_04080375.1| DNA repair protein recN [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228929220|ref|ZP_04092247.1| DNA repair protein recN [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228935497|ref|ZP_04098315.1| DNA repair protein recN [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229123694|ref|ZP_04252889.1| DNA repair protein recN [Bacillus cereus 95/8201]
 gi|254721773|ref|ZP_05183562.1| DNA repair protein [Bacillus anthracis str. A1055]
 gi|51974791|gb|AAU16341.1| DNA repair protein [Bacillus cereus E33L]
 gi|228659829|gb|EEL15474.1| DNA repair protein recN [Bacillus cereus 95/8201]
 gi|228824249|gb|EEM70063.1| DNA repair protein recN [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830510|gb|EEM76120.1| DNA repair protein recN [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842997|gb|EEM88080.1| DNA repair protein recN [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 583

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ N    +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 213 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|331084977|ref|ZP_08334064.1| chromosome segregation protein SMC [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408677|gb|EGG88142.1| chromosome segregation protein SMC [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 1186

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 100/283 (35%), Gaps = 31/283 (10%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++A+  L  F    T  VG NG GK+N+ +A+ ++      +  R  S
Sbjct: 1   MYLKSIEVQGFKSFANKILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    +     T   +  R       IN    R
Sbjct: 61  MQDVIFSGTENRRPLSYASVAITLDNADHQLPVDYHEVTVTRKLYRSGESEYLINGTACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+ +    
Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKYLS-VR 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSLIMEYVQK 218
           +L   R  L+          S +E Q+  L       +I + + E +      +      
Sbjct: 180 KLEDERQNLVRVN----DILSELEKQVEPLRRQSETARIYLKKKEELKIYDINMFLMDTI 235

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                I+ +   F D   + +    K+E  K  ++ ++     
Sbjct: 236 RLKEQIETAQRSFDDANRELTEAKEKQEALKLAYEKQEQKLAE 278



 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 104/318 (32%), Gaps = 37/318 (11%)

Query: 56   FRRASYADVTRIGSPSFFSTFARVEGMEGLADISI------------KLETRDDRSVRCL 103
            FRR+   +  + G     +  A  EG       +I            +L +  ++  +  
Sbjct: 841  FRRSHEEETLQAGKEHAANEIADREGQILKLRQTIVQLSEELHAAKEELASYMEQKEKLQ 900

Query: 104  QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
             +   + +  +EL++HL        +D+    L  ++    ++    ++       + + 
Sbjct: 901  LVQKEIFQSREELSRHL------SDLDKETFRLDSKKTALEEQTEKLMNYMWEEYELTYS 954

Query: 164  RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
              +  R   L +          ++ ++  LG     A  +  N L        Q ++   
Sbjct: 955  HALEMRKEELLDPVLLKKEIQRLKTEIKALGTVNVNAIEDYKNVLERYEFLKGQHDDLVE 1014

Query: 224  IKLSLTGFLDGKFDQSFCALKEEYAK--KLFDGRKMDSMSRR--TLIGPHRSDLI---VD 276
             + +L   ++          +E++AK  K FD            TL      D++   + 
Sbjct: 1015 AEKTLVQIIEELDIAMRKQFEEQFAKIAKEFDSVFKQLFGGGKGTLELLEDEDILEAGIR 1074

Query: 277  YCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
               +            S GE+ +  + +  A           +P  LLDEI A LD+   
Sbjct: 1075 IIAQPPGKKLQNMMQLSGGEKALTAIALLFA-----IQNLKPSPFCLLDEIEAALDDSNV 1129

Query: 332  NALFRIVTDI--GSQIFM 347
                + +  +   +Q  +
Sbjct: 1130 TRFAKYLHKLTKHTQFIV 1147


>gi|301299299|ref|ZP_07205585.1| chromosome segregation protein SMC [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300853143|gb|EFK80741.1| chromosome segregation protein SMC [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 1178

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +KIK L ++ F+++A+  +  F    T  VG NG GK+NI EA+ ++   +     R + 
Sbjct: 1   MKIKSLTLNGFKSFANKTIINFQDGLTGIVGPNGSGKSNITEALRWVLGEQSVKNLRGSK 60

Query: 61  YADVTRIGSPSFFST-FARV-------EGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS +  +   A V       +G        I++  R  RS      IN+  +R
Sbjct: 61  MPDIIFAGSDTRAALNRAEVTLVLDNEDGYLYNQPNEIRITRRIFRSGDSEFFINEKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    +RR  ++
Sbjct: 121 LKDVVDLFIDTGLGRESFSIISQGRVESIFNSKPQDRRILIE 162


>gi|90961603|ref|YP_535519.1| chromosome partition protein [Lactobacillus salivarius UCC118]
 gi|90820797|gb|ABD99436.1| Chromosome partition protein [Lactobacillus salivarius UCC118]
          Length = 1178

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +KIK L ++ F+++A+  +  F    T  VG NG GK+NI EA+ ++   +     R + 
Sbjct: 1   MKIKSLTLNGFKSFANKTIINFQDGLTGIVGPNGSGKSNITEALRWVLGEQSVKNLRGSK 60

Query: 61  YADVTRIGSPSFFST-FARV-------EGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS +  +   A V       +G        I++  R  RS      IN+  +R
Sbjct: 61  MPDIIFAGSDTRAALNRAEVTLVLDNEDGYLYNQPNEIRITRRIFRSGDSEFFINEKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    +RR  ++
Sbjct: 121 LKDVVDLFIDTGLGRESFSIISQGRVESIFNSKPQDRRILIE 162


>gi|150402566|ref|YP_001329860.1| chromosome segregation protein SMC [Methanococcus maripaludis C7]
 gi|150033596|gb|ABR65709.1| chromosome segregation protein SMC [Methanococcus maripaludis C7]
          Length = 1189

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63
           +  +++  F+++ + +L      T  +G NG GK+N ++ I F+   +  +  R   +  
Sbjct: 4   LSEIHMKNFKSFKNSKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +    +     +FA V       D  + L++      R ++IN 
Sbjct: 64  LITYHNGKR-ESFAEVTLFFDNKDRKMPLDSDKVGISRKVKING 106


>gi|229093233|ref|ZP_04224351.1| DNA repair protein recN [Bacillus cereus Rock3-42]
 gi|228690207|gb|EEL44001.1| DNA repair protein recN [Bacillus cereus Rock3-42]
          Length = 583

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ N    +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 213 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|30264249|ref|NP_846626.1| DNA repair protein RecN [Bacillus anthracis str. Ames]
 gi|47778289|ref|YP_021041.2| DNA repair protein RecN [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187076|ref|YP_030328.1| DNA repair protein RecN [Bacillus anthracis str. Sterne]
 gi|165873119|ref|ZP_02217736.1| DNA repair protein RecN [Bacillus anthracis str. A0488]
 gi|167633676|ref|ZP_02392000.1| DNA repair protein RecN [Bacillus anthracis str. A0442]
 gi|167641898|ref|ZP_02400136.1| DNA repair protein RecN [Bacillus anthracis str. A0193]
 gi|170709221|ref|ZP_02899644.1| DNA repair protein RecN [Bacillus anthracis str. A0389]
 gi|177654841|ref|ZP_02936598.1| DNA repair protein RecN [Bacillus anthracis str. A0174]
 gi|190566084|ref|ZP_03019003.1| DNA repair protein RecN [Bacillus anthracis Tsiankovskii-I]
 gi|227816950|ref|YP_002816959.1| DNA repair protein RecN [Bacillus anthracis str. CDC 684]
 gi|229602126|ref|YP_002868468.1| DNA repair protein RecN [Bacillus anthracis str. A0248]
 gi|254683938|ref|ZP_05147798.1| DNA repair protein RecN [Bacillus anthracis str. CNEVA-9066]
 gi|254736286|ref|ZP_05193992.1| DNA repair protein RecN [Bacillus anthracis str. Western North
           America USA6153]
 gi|254741324|ref|ZP_05199011.1| DNA repair protein RecN [Bacillus anthracis str. Kruger B]
 gi|254754042|ref|ZP_05206077.1| DNA repair protein RecN [Bacillus anthracis str. Vollum]
 gi|254757913|ref|ZP_05209940.1| DNA repair protein RecN [Bacillus anthracis str. Australia 94]
 gi|30258894|gb|AAP28112.1| DNA repair protein RecN [Bacillus anthracis str. Ames]
 gi|47551994|gb|AAT33516.2| DNA repair protein RecN [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181003|gb|AAT56379.1| DNA repair protein RecN [Bacillus anthracis str. Sterne]
 gi|164711133|gb|EDR16693.1| DNA repair protein RecN [Bacillus anthracis str. A0488]
 gi|167510141|gb|EDR85549.1| DNA repair protein RecN [Bacillus anthracis str. A0193]
 gi|167531082|gb|EDR93769.1| DNA repair protein RecN [Bacillus anthracis str. A0442]
 gi|170125883|gb|EDS94787.1| DNA repair protein RecN [Bacillus anthracis str. A0389]
 gi|172080502|gb|EDT65588.1| DNA repair protein RecN [Bacillus anthracis str. A0174]
 gi|190563003|gb|EDV16969.1| DNA repair protein RecN [Bacillus anthracis Tsiankovskii-I]
 gi|227004801|gb|ACP14544.1| DNA repair protein RecN [Bacillus anthracis str. CDC 684]
 gi|229266534|gb|ACQ48171.1| DNA repair protein RecN [Bacillus anthracis str. A0248]
          Length = 579

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 58/286 (20%), Positives = 111/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 2   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 57  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 167

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 208

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ N    +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 209 DEENNLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 249


>gi|320589019|gb|EFX01487.1| cohesin complex subunit [Grosmannia clavigera kw1407]
          Length = 1925

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 106/307 (34%), Gaps = 62/307 (20%)

Query: 2   TNRI-KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--F 56
             ++ K+  L +  F++Y    + L  D+  T  VG NG GK+N ++AISF+   +    
Sbjct: 152 AAKMGKLNRLELFNFKSYKGHHVLLFGDSYFTSVVGPNGSGKSNSMDAISFVLGIKSSHL 211

Query: 57  RRASYADVT--------------------------------RIGSPSFFSTFARVEGMEG 84
           R +   D+                                 R G     + +      + 
Sbjct: 212 RSSHLKDLVYRGRVMETSKPSEDAPETNETGGDALEDDEGGRSGRGDPKTAWVMAVYEDD 271

Query: 85  LADISIKLETRDDRSVRCLQINDVVIRVVDE---------LNKHLRISWLVPSMDRIFSG 135
             D      +  ++     +IN+ V+   D          L K          ++ I S 
Sbjct: 272 AGDTHRWKRSITNQGSSEYRINNRVVTAQDYNQALENENILIKARNFLVFQGDVEAIASQ 331

Query: 136 LSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
            S +  R ++++  ++D  P + R   + E+ +  +N  LT     ++     + Q AE 
Sbjct: 332 SSQDLTRLIEQISGSLDFKPEYERLKAEAEQAIENQNFHLTRRRAINAEIKQYQEQKAEA 391

Query: 194 GV---KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
                K+N     ++N + S I  Y +  +   +++           Q       E+ +K
Sbjct: 392 ESFQRKLNERDEAIVNQMLSKIHHYQRIMDDSSVQI-----------QDHQENLAEFRRK 440

Query: 251 LFDGRKM 257
           L    K 
Sbjct: 441 LHSAEKQ 447


>gi|255591216|ref|XP_002535467.1| structural maintenance of chromosomes smc, bacterial, putative
           [Ricinus communis]
 gi|223523015|gb|EEF26914.1| structural maintenance of chromosomes smc, bacterial, putative
           [Ricinus communis]
          Length = 333

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A+V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216
             +      L       Y   +  + +E Q  +A+  ++++  R ++ ++ L   I    
Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +++      L+        +     +++E+Y K
Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271


>gi|15232802|ref|NP_190330.1| ATSMC2; transporter [Arabidopsis thaliana]
 gi|75337454|sp|Q9SN90|SMC22_ARATH RecName: Full=Structural maintenance of chromosomes protein 2-2;
           Short=AtSMC2-2; AltName: Full=Chromosome-associated
           protein E-2; Short=AtCAP-E2
 gi|6522529|emb|CAB61972.1| chromosome assembly protein homolog [Arabidopsis thaliana]
 gi|332644763|gb|AEE78284.1| structural maintenance of chromosomes protein 2-2 [Arabidopsis
           thaliana]
          Length = 1171

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 18/125 (14%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA+  +V  FD       G NG GK+NIL++I F   ++  +  R A
Sbjct: 1   MHIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          V            G E  ++I++  +       + L IN 
Sbjct: 61  NLQELVYKQGQAGITRATVSVTFDNSERNRSPLGHEDHSEITVTRQIVVGGKNKYL-ING 119

Query: 108 VVIRV 112
            + + 
Sbjct: 120 KLAQP 124


>gi|15901108|ref|NP_345712.1| hypothetical protein SP_1247 [Streptococcus pneumoniae TIGR4]
 gi|111658430|ref|ZP_01409109.1| hypothetical protein SpneT_02000401 [Streptococcus pneumoniae
           TIGR4]
 gi|14972729|gb|AAK75352.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
          Length = 1179

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDIIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHVYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELTQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|268319231|ref|YP_003292887.1| chromosome partitioning protein Smc [Lactobacillus johnsonii
           FI9785]
 gi|262397606|emb|CAX66620.1| chromosome partitioning protein Smc [Lactobacillus johnsonii
           FI9785]
          Length = 1186

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 48/267 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + ++ L ++ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R  +
Sbjct: 1   MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116
             DV   GS        A VE +    D  +  +  +    R +  N     +++     
Sbjct: 61  MKDVIFAGSQMRAPMNHAEVELVFDNRDHQLAYDNDEVVVTRKILRNGESDYLLNHHPVR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K +R  ++   M             D I +    +RR      +F             E
Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRR-----GIFEEAAGVLHFKQQKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             ++                    A +  +         +++  L   I    ++ +   
Sbjct: 176 IALKQ--------------LDKTNANLIRI--------NDLVKELEGRIEPLHEQSSLAK 213

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKK 250
                   LD K  Q      E   ++
Sbjct: 214 EYKFQKEQLDHKLKQLLGLEIESLNEE 240


>gi|268679582|ref|YP_003304013.1| SMC domain protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268617613|gb|ACZ11978.1| SMC domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 789

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + +  L++  F+ Y+S  + F       +G NG GK+ + EAI   +     R   + +V
Sbjct: 1  MILSKLHLENFKRYSSFDIEFGEGLIGIIGKNGSGKSTLFEAI-LFALYGELRNKKFKEV 59

Query: 65 TRIGSPSFFSTFARVE 80
           R  + +       VE
Sbjct: 60 IR-NASASDKDAVVVE 74



 Score = 37.2 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 78/202 (38%), Gaps = 23/202 (11%)

Query: 152 DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---AL 208
           +P+H  +  +++ L + +           S  S ++ ++A+   +I   +  + N    L
Sbjct: 579 EPKHTAKQSEYDELQKQK-------EKQYSVISELKEKIAKNEGEIKTLQNALENNDIQL 631

Query: 209 SSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
             +  +    +++  IKLSL+ F   L+ K       +  +    +  G       +   
Sbjct: 632 KKVQSKKDDLQDYEKIKLSLSEFKTKLNSKIAPRISQIASQMYATITKG-------KYQY 684

Query: 266 IGPHRS-DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI--LLLDEI 322
           I  +   D  +    K   I   S GE  +  + + +A ++ +S   G + +  L  DE+
Sbjct: 685 IEVNNDFDFFIYDEGKCYPIERFSGGEIDLANLVLRIAISKTLSELNGASSVGFLAFDEV 744

Query: 323 SAHLDEDKRNALFRIVTDIGSQ 344
               DE++R  +      I  Q
Sbjct: 745 FGSQDENRRMEILEAFHTIKEQ 766


>gi|283798075|ref|ZP_06347228.1| SMC family protein [Clostridium sp. M62/1]
 gi|291074217|gb|EFE11581.1| SMC family protein [Clostridium sp. M62/1]
          Length = 1195

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 22/191 (11%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I  F+++A+  L  F    T  VG NG GK+N+ +A+ ++      +  R  +
Sbjct: 1   MYLKSIEIQGFKSFANKILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGT 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+       F      ++       IS    T   R  R      +IN    R
Sbjct: 61  MQDVIFSGTEIRKPQGFAYVAITLDNSNHRLPISYDQVTVSRRLYRSGESEYRINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +DRI SG   ERR   D     +  + RR++I   
Sbjct: 121 LKDIQELFYDTGIGKEGYSIIGQGQIDRILSGRPEERRELFDEAAGIVKFK-RRKLIAQR 179

Query: 164 RLMRGRNRLLT 174
           +LM     L+ 
Sbjct: 180 KLMDEEQNLVR 190


>gi|222529160|ref|YP_002573042.1| chromosome segregation protein SMC [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456007|gb|ACM60269.1| chromosome segregation protein SMC [Caldicellulosiruptor bescii DSM
           6725]
          Length = 1177

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 108/311 (34%), Gaps = 37/311 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + IK+L I  F+++    R+ F+   T  VG NG GK+NI +AI +    +     R A 
Sbjct: 1   MYIKWLEIYGFKSFCEKTRIEFEKGITAIVGPNGCGKSNITDAIRWALGEQSLKLLRAAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+       F       +   G+  I    + +  R  RS      IN +  R
Sbjct: 61  QEDLIFAGTEKRKSQGFAEVSICFDNSSGVLPIDYQEVVITRRLFRSGESEFFINKIPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I +   +ER R  +        ++R+   + E
Sbjct: 121 LKDVYELFLDSGLGKDGYSIISQGRVDEIINARPVERYRIFEEACGITKYKYRKE--ETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R ++                  +  Q+ E+   +  A         + +    + ++   
Sbjct: 179 RKLK---ATEENIQRLQDVIFELSTQLEEIKTDVEKA--------KTYLQINQKLQSLKK 227

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            K      L G+    F   +++  ++L    +   + R      +++ L +D   + + 
Sbjct: 228 EKYVYEYNLTGRRYHDFLTKEKQLNEELEKLIQ---LRRELEESINQNKLQMDLLTQEVE 284

Query: 284 IAHGSTGEQKV 294
               S  E K 
Sbjct: 285 KTRLSYDELKS 295



 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 35/171 (20%)

Query: 195  VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
             K    R++ +      + +    +    +   L   +   F ++F  +K  +++  F+ 
Sbjct: 989  EKRLQERMQFLQKQIEDLQKTT--DELKRLISHLEKNMKEIFLENFEKIKSLFSEIFFE- 1045

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAI--------------TIAHGSTGEQKVVLVGIF 300
                      L G    DL +   D  +               I   S GE+ +V + + 
Sbjct: 1046 ----------LFGGGSCDLKLIGQDGELGVDIDVKPPGKKLQNINLLSGGEKALVAIALL 1095

Query: 301  LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMT 348
             A       T   + + +LDEI + LDE       + + ++ +Q   I +T
Sbjct: 1096 FAFL-----TFKGSLLCILDEIDSSLDEANVQRFAQYIKNLNNQSQIIIVT 1141


>gi|219851402|ref|YP_002465834.1| chromosome segregation protein SMC [Methanosphaerula palustris
           E1-9c]
 gi|219545661|gb|ACL16111.1| chromosome segregation protein SMC [Methanosphaerula palustris
           E1-9c]
          Length = 1146

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 52/151 (34%), Gaps = 10/151 (6%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK L I  F+++     + F    T+  G NG GK+NI++AI F   LS  R  R   
Sbjct: 1   MFIKELEIDNFKSFGRKTTIPFFEGFTVVSGPNGSGKSNIIDAILFVLALSSSRNLRAEK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL---- 116
             D+  + S    +  A            IK       S   +         V       
Sbjct: 61  LTDLINLNSNRNTAEVALTFSDGTTIRRKIKRTAAGYYSYNYMNNRLCKQSEVSAYLADH 120

Query: 117 --NKHLRISWLVPSMDRIFSGLSMERRRFLD 145
               H     +   + RI      ERRR LD
Sbjct: 121 GIIPHGYNVVMQGDITRIMEMSDGERRRILD 151


>gi|302389626|ref|YP_003825447.1| chromosome segregation protein SMC [Thermosediminibacter oceani DSM
           16646]
 gi|302200254|gb|ADL07824.1| chromosome segregation protein SMC [Thermosediminibacter oceani DSM
           16646]
          Length = 1185

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 21/171 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K + +  F+++A  + + F       VG NG GK+NI +AI ++   +     R + 
Sbjct: 1   MYLKRVELQGFKSFADRIEIEFQPGINAIVGPNGSGKSNITDAIRWVLGEQSIKTLRGSK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS              ++  + L  +    I +  R  RS      +N V  R
Sbjct: 61  LEDVIFAGSHGRKPMGMAEVSIILDNSDHLLPLEYSEICITRRVFRSGESEFYLNKVPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
           + D         + K          +D        ERR   +     +  R
Sbjct: 121 LRDIQELFMDTGIGKDGYSIISQGQVDEFLISRPEERRMIFEETAGIMKHR 171


>gi|229174851|ref|ZP_04302371.1| DNA repair protein recN [Bacillus cereus MM3]
 gi|228608519|gb|EEK65821.1| DNA repair protein recN [Bacillus cereus MM3]
          Length = 583

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 108/282 (38%), Gaps = 61/282 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +   ++   
Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGDRIVKQLG-IYQNVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
            D+E+L +     L          S  E QMA         R+++I      I +   K 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEISKADLKM 212

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +   I+L+        F++ + AL + Y     DG+ +D++ 
Sbjct: 213 D-EEIELTEERLQISNFEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|227890690|ref|ZP_04008495.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus salivarius ATCC 11741]
 gi|227867628|gb|EEJ75049.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus salivarius ATCC 11741]
          Length = 1178

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +KIK L ++ F+++A+  +  F    T  VG NG GK+NI EA+ ++   +     R + 
Sbjct: 1   MKIKSLTLNGFKSFANKTIINFQDGLTGIVGPNGSGKSNITEALRWVLGEQSVKNLRGSK 60

Query: 61  YADVTRIGSPSFFST-FARV-------EGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS +  +   A V       +G        I++  R  RS      IN+  +R
Sbjct: 61  MPDIIFAGSDTRAALNRAEVTLVLDNEDGYLYNQPNEIRITRRIFRSGDSEFFINEKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    +RR  ++
Sbjct: 121 LKDVVDLFIDTGLGRESFSIISQGRVESIFNSKPQDRRILIE 162


>gi|327389482|gb|EGE87827.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           GA04375]
          Length = 1179

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELTQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|256005340|ref|ZP_05430305.1| chromosome segregation protein SMC [Clostridium thermocellum DSM
           2360]
 gi|255990659|gb|EEU00776.1| chromosome segregation protein SMC [Clostridium thermocellum DSM
           2360]
          Length = 1210

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 99/285 (34%), Gaps = 35/285 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A  ++L F++  T  VG NG GK+NI +AI   L     +  R   
Sbjct: 1   MHLKRLEIQGFKSFADRIQLEFNSGITAVVGPNGSGKSNISDAIRWVLGEQSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       F       +  +G+  I    + +  R  RS      IN    R
Sbjct: 61  MEDVIFAGTEHRKPMGFAEVSLTFDNSDGVLPIDFSEVTVTRRVYRSGESEYMINKTPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D     L                +D I S  S +RR   +     +   ++ R  + E
Sbjct: 121 LKDIYELFLDTGIGKDGYSIIGQGRVDEILSSKSEDRRAIFEEASGIMK--YKVRKQEAE 178

Query: 164 RLMRG-RNRLLTEG---YFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEY 215
           + +   R  LL          +    +  Q +E+  +    R  +    +N     I  Y
Sbjct: 179 KKLEMTRQNLLRINDIIAELENQLEPLREQ-SEVAKRYLGLRETLKVLEVNVYIENIARY 237

Query: 216 VQKE-NFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKM 257
            +K         S+   +D +    +   +L +     L D    
Sbjct: 238 KEKIKELEENYASVKDNIDSENKRLEEITSLNQRNLSILKDMEGR 282


>gi|255731480|ref|XP_002550664.1| hypothetical protein CTRG_04962 [Candida tropicalis MYA-3404]
 gi|240131673|gb|EER31232.1| hypothetical protein CTRG_04962 [Candida tropicalis MYA-3404]
          Length = 1100

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 13/148 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ L++  F  + S  L    Q    +G NG GK+ +L  IS     +     R +S  D
Sbjct: 78  IEKLSLKNFMCHDSFELELGPQLNFIIGRNGSGKSAVLTGISVGLGAKATDTNRGSSIKD 137

Query: 64  VTRIGSP-SFFSTFARVEGME--------GLADISIKLETRDDRSVRCLQINDVVI-RVV 113
           + + G   S  +   + EG +            +  KL+ +   S      N   +    
Sbjct: 138 LIKDGKSVSRITIVFKNEGPDAYKPNVYGNKIIVERKLQRQGGNSYSLKTSNGKTVSHKK 197

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR 141
            +L++ L    +       F      R 
Sbjct: 198 SDLDEMLYKFSITVDNPLAFLSQDKARE 225


>gi|291569106|dbj|BAI91378.1| DNA repair protein RecN [Arthrospira platensis NIES-39]
          Length = 592

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 60/197 (30%), Gaps = 21/197 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L L       +F G+ G GK+ IL+A+  +  G+           R
Sbjct: 2   LISLRIENFALIDHLDLELGPGLNVFTGETGAGKSIILDAVDAVLGGK-----VDRRSIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISI----------KLETRDDRSVRCLQINDVVIR 111
            G       + F     +       +I +          +L    D+     ++N +++ 
Sbjct: 57  TGCDRAILEACFEVNPDLIDWFREQEIDLVDGSLVVCCRELVVNQDKFRSKSRLNGILVS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRN 170
                    R   +      +  G    +R +LD    +     R R+   + R    +N
Sbjct: 117 RTIIDGLRDRFVEITAQGQTVQLGKPALQREWLDLYGGSNTIGLRERVSQAYTRAREVQN 176

Query: 171 RLLTEGYFDSSWCSSIE 187
            L             I+
Sbjct: 177 ALQKRRQDSQQRLQRID 193


>gi|240103799|ref|YP_002960108.1| chromosome segregation protein [Thermococcus gammatolerans EJ3]
 gi|239911353|gb|ACS34244.1| DNA double-strand break repair rad50 ATPase (rad50) [Thermococcus
           gammatolerans EJ3]
          Length = 885

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 97/261 (37%), Gaps = 34/261 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + I  FR +    + F     + +G NG GK++ILEAI                 
Sbjct: 1   MRVRKIEIRNFRAHRKSIVEFSDGINLIIGQNGAGKSSILEAIFASLYL----------- 49

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIRVVD 114
              G PSF   + +     G  ++S+ LE          TR  +    L+   ++     
Sbjct: 50  ---GHPSFPKGYLKANARVGTGELSLGLEFEHNGKTYRITRTTKKSELLENGKLIAEKSS 106

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA---IDPRHRRRMI--DFERLMRGR 169
           E+ + +  +       ++++     R+  ++ ++     ++   R+ +   D+E   R  
Sbjct: 107 EVARWVERNVYP---LQVYTNALYIRQGEIEGIITNREVMEKVLRKVLGIEDYENAERNS 163

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS--SLIMEYVQKENFPHIKLS 227
             ++ E          +  + AE+  +++ A       L   S + +  ++ +    KLS
Sbjct: 164 AEVIRELKRRRENLKKLIERKAEVEDRLSEAGKRFAETLRRISELRKRERELSAEVEKLS 223

Query: 228 LTGFLDGKFDQSFCALKEEYA 248
                  +  +    L++  A
Sbjct: 224 KLYQEMKERKELIAGLEKRIA 244



 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 62/315 (19%), Positives = 114/315 (36%), Gaps = 22/315 (6%)

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
              ++  G  SF     R+  +E      + L+    R     +  D+  R  DE     
Sbjct: 575 LKRLSERGFSSFDEVEERIGELEKPYREFLSLKDIPRRIEALEKKLDIEQRKADE--SRA 632

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            I+ L   +++    L   R+ F +      +  +  +    ER    R  L        
Sbjct: 633 NIARLKAELEKARKELEEARKEFSEEDFERAEREYLEKSRALERA---RAELEGAESLRD 689

Query: 181 SWCSSIEAQMAELGVKINIAR-VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                I+   A LG      R +E+I    + +  + +K      +  L G       + 
Sbjct: 690 EIARLIDELKANLGEIEKAERELELIEKALADLTAFREKIARLKAEEELRGL------EE 743

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRT-LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
              L  E   ++ +G+      RR    G  R +L V Y    + I   S GE+  + + 
Sbjct: 744 VQKLAGELFSEMTEGKYQGIRLRREKRYGKERIELKVLYAGNEVGIDFLSGGERIALGLA 803

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD---IGSQIFMTGTDKSVF 355
             LA +       G   +L+LDE +  LDE++R  L  I++       Q+ +   D+ + 
Sbjct: 804 FRLALSLY---KVGNLELLILDEPTPFLDEERRKKLVEIISSQLRKIPQVIIVSHDEELK 860

Query: 356 DSLNETAKFMRISNH 370
           D+ +     +R++N 
Sbjct: 861 DAAD---YVIRVTNA 872


>gi|163847436|ref|YP_001635480.1| SMC domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|163668725|gb|ABY35091.1| SMC domain protein [Chloroflexus aurantiacus J-10-fl]
          Length = 379

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 123/397 (30%), Gaps = 77/397 (19%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
              ++++ + +  F++   L         I +G NG GK+NIL      +  R       
Sbjct: 4   DGHMQLQTIKVQGFKSIRELEFSLRP-LNILIGANGSGKSNIL---GVFAFLRAMVERHL 59

Query: 62  A-DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
              V R G       F +          S+++E    +  R  + N         +  + 
Sbjct: 60  QMYVARAGGADRILHFGQKNTD------SLQIELWFTKKNRRARGN---------IIANG 104

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
               LVP++               DR VFA +         +E+ +      L     + 
Sbjct: 105 YRCALVPAVG--------------DRFVFAEERAFFHD-RRYEKPVE----TLLGSGHEE 145

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---- 236
           S         A  G  I     ++  A+ S I+ Y   +     ++  TG +D  +    
Sbjct: 146 SLLP------ASYGRGIPA---DVFEAMQSWIV-YHFHDTSDSARVKQTGDIDDNYWLRQ 195

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI------------ 284
           D S       Y ++       + +    ++ P   D ++                     
Sbjct: 196 DASNLTAYLYYIQQQAPDHYRNIVDVIRMVAPFFDDFVLRPSPFNPNKIKLEWRERGSDT 255

Query: 285 ---AHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-- 338
              A+  S G  + + +   L     +     F  I+LLDE    L     + L  ++  
Sbjct: 256 YFDAYALSDGTLRFICLATLL-----LQPARKFPAIILLDEPEMGLHPYAIHVLAELLHS 310

Query: 339 TDIGSQIFMTGTDKSVFDSL-NETAKFMRISNHQALC 374
               +Q+ +     ++ +    E    +   + Q +C
Sbjct: 311 AATQTQVIVATQSVTLVNQFEPEDIVVVERQDGQPVC 347


>gi|116629438|ref|YP_814610.1| chromosome segregation ATPase [Lactobacillus gasseri ATCC 33323]
 gi|282850852|ref|ZP_06260226.1| chromosome segregation protein SMC [Lactobacillus gasseri 224-1]
 gi|311110914|ref|ZP_07712311.1| cell division protein Smc [Lactobacillus gasseri MV-22]
 gi|116095020|gb|ABJ60172.1| condensin subunit Smc [Lactobacillus gasseri ATCC 33323]
 gi|282557804|gb|EFB63392.1| chromosome segregation protein SMC [Lactobacillus gasseri 224-1]
 gi|311066068|gb|EFQ46408.1| cell division protein Smc [Lactobacillus gasseri MV-22]
          Length = 1186

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 48/267 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + ++ L ++ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R  +
Sbjct: 1   MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116
             DV   GS        A VE +    D  +  +  +    R +  N     +++     
Sbjct: 61  MKDVIFAGSQMRAPMNHAEVELVFDNRDHQLASDDEEVVVTRKILRNGESDYLLNHHPVR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K +R  ++   M             D I +    +RR      +F             E
Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRR-----GIFEEAAGVLHFKQQKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             ++                    A +  +         +++  L   I    ++ +   
Sbjct: 176 TALKQ--------------LDKTNANLIRI--------NDLVKELEGRIEPLHEQSSLAK 213

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKK 250
                   LD K  Q      E   ++
Sbjct: 214 EYKFQKEQLDHKLKQLLGLEIESLNEE 240


>gi|121533799|ref|ZP_01665626.1| chromosome segregation protein SMC [Thermosinus carboxydivorans
           Nor1]
 gi|121307790|gb|EAX48705.1| chromosome segregation protein SMC [Thermosinus carboxydivorans
           Nor1]
          Length = 1185

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 96/283 (33%), Gaps = 38/283 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG----RGFRRA 59
           + ++ L +  F+++A    + F    T  VG NG GK+NI +AI + + G    R  R A
Sbjct: 1   MLLRKLELYGFKSFADKTEVEFGPGITAIVGPNGSGKSNITDAIRW-ALGEQNIRNLRGA 59

Query: 60  SYADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVI 110
              DV   GS        A V  +   +  ++ L+  +    R +         IN    
Sbjct: 60  KVEDVIFAGSAKRRPLGVAEVSLVFDNSSGTLPLDFNEVTITRRVYRSGDSEYYINKAPC 119

Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           R+ D         + +          +D + +  + ERR F +             +  +
Sbjct: 120 RLKDIHELLFDVGIGRDSLTVIGQNKIDEVLNAKAEERRLFFEEAAG---------ITKY 170

Query: 163 ERLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +   R   R L E   +    +   + I  Q+  L    +  R +  N L   ++     
Sbjct: 171 KHRKREALRKLEETEQNLVRVNDLIAEIHNQLGPLAE--SAERTKRYNVLRQELISCQVT 228

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                ++ +       + +Q     +E  A      R+ +   
Sbjct: 229 VLLDRLERATKMAESARLEQETLTEQEVVAAAQLSVRESEKER 271


>gi|315303705|ref|ZP_07874219.1| chromosome segregation protein SMC [Listeria ivanovii FSL F6-596]
 gi|313627918|gb|EFR96537.1| chromosome segregation protein SMC [Listeria ivanovii FSL F6-596]
          Length = 1186

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + + F    T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   GS +     FA V  +    D  + L+  +    R +  N  
Sbjct: 61  MGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTRRIYRNGE 109


>gi|288573630|ref|ZP_06391987.1| SMC domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569371|gb|EFC90928.1| SMC domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 447

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L ++ FR Y      F  + TI VG+NG GKT IL+AI+ +  G  F+ +      +
Sbjct: 2  LINLTLNNFRRYEKAHFCFHPKMTILVGENGKGKTTILDAIAVM-LGTYFQGSK----IK 56

Query: 67 IGSPSFFSTFARV 79
           G  +     AR+
Sbjct: 57 TGQSTVKKDDARL 69


>gi|225860920|ref|YP_002742429.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298229965|ref|ZP_06963646.1| chromosome segregation protein SMC [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254344|ref|ZP_06977930.1| chromosome segregation protein SMC [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298502756|ref|YP_003724696.1| SMC structural maintenance of chromosomes partitioning protein
           [Streptococcus pneumoniae TCH8431/19A]
 gi|225727720|gb|ACO23571.1| chromosome segregation protein SMC [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|298238351|gb|ADI69482.1| SMC structural maintenance of chromosomes partitioning protein
           [Streptococcus pneumoniae TCH8431/19A]
          Length = 1179

 Score = 60.7 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++  +G    A   I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTESRKPLNYASVVVTLDNHDGFIKDAGQEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFLDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVE-MINALSSLIMEY 215
             ++     L       Y   +    +E Q AE   K   +   R    ++ L + I E 
Sbjct: 179 SKLQQTQDNLDRLEDIIYELDNQIKPLEKQ-AENARKFLDLEGQRKAIYLDVLVAQIKEN 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +      +L+    L   + Q    L+EE  + L   R+
Sbjct: 238 KAELESTEEELTQVQELLMSYYQKREKLEEE-NQTLKKQRQ 277


>gi|163784051|ref|ZP_02179006.1| purine NTPase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880678|gb|EDP74227.1| purine NTPase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 890

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 74/208 (35%), Gaps = 24/208 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + +K L +  F  +   +L F     T+ +GDNG GK++ILEAI F   G   +    + 
Sbjct: 1   MILKSLYLENFLAHEETKLNFAENGITVLIGDNGAGKSSILEAIQFALYGSSSKGNI-SQ 59

Query: 64  VTRIG-SPSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIRV 112
           + + G   +         G E   +  I L            + ++    L     + + 
Sbjct: 60  LVKWGRKKAKIELEFIKNGSEYKIEREIVLTGKSHSQTAVVYKKEKGNYRLYYQKNINKE 119

Query: 113 VDELNKHLRISWLVP------SMDRIFSGLSMER----RRFLDRMVFA-IDPRHRRRMID 161
           + ++    + ++L         ++ +      +R       L+  ++  +  ++  +   
Sbjct: 120 LPKITGITQKTFLNSILVKQGEIEGLLELTPKKRAQVFEELLEMSLYQLLSEKYGEKRRQ 179

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            E+ +      L +        S ++ +
Sbjct: 180 IEKEINAVQSSLPDEKEIKEKLSQLKEE 207


>gi|242079535|ref|XP_002444536.1| hypothetical protein SORBIDRAFT_07g023430 [Sorghum bicolor]
 gi|241940886|gb|EES14031.1| hypothetical protein SORBIDRAFT_07g023430 [Sorghum bicolor]
          Length = 1253

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 18/151 (11%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           I  L +  F++Y     +      T  +G NG GK+N+++AISF+   R    R A   D
Sbjct: 22  IDRLVVENFKSYKGEQTIGPFVDFTAIIGPNGAGKSNLMDAISFVLGVRSAHLRGAQLKD 81

Query: 64  VT-----RIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVI------- 110
           +      R           R+        ++               +IN   +       
Sbjct: 82  LIYALDDRDKEAKGRRASVRLFYRQSNQEELCFTRSITGGGGGSEYRINGSPVTWDQYNA 141

Query: 111 --RVVDELNKHLRISWLVPSMDRIFSGLSME 139
             R +  L K          ++ I S    E
Sbjct: 142 KLRSLGILVKARNFLVFQGDVESIASKNPKE 172


>gi|156839145|ref|XP_001643267.1| hypothetical protein Kpol_1063p20 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113869|gb|EDO15409.1| hypothetical protein Kpol_1063p20 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1171

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVEELIIDGFKSYATRTVISDWDPQFNAITGLNGSGKSNILDAICFVLGISSMATVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E    IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNSDKSNAPIGFESSPTISVTRQVALGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
                   L+    +   + + + +    
Sbjct: 120 HRAPQQSVLHLFQSVQLNINNPNFLIMQG 148


>gi|238852588|ref|ZP_04642998.1| chromosome segregation protein SMC [Lactobacillus gasseri 202-4]
 gi|238834734|gb|EEQ26961.1| chromosome segregation protein SMC [Lactobacillus gasseri 202-4]
          Length = 1186

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 48/267 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + ++ L ++ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R  +
Sbjct: 1   MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116
             DV   GS        A VE +    D  +  +  +    R +  N     +++     
Sbjct: 61  MKDVIFAGSQMRAPMNHAEVELVFDNRDHQLASDDEEVVVTRKILRNGESDYLLNHHPVR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K +R  ++   M             D I +    +RR      +F             E
Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRR-----GIFEEAAGVLHFKQQKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             ++                    A +  +         +++  L   I    ++ +   
Sbjct: 176 TALKQ--------------LDKTNANLIRI--------NDLVKELEGRIEPLHEQSSLAK 213

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKK 250
                   LD K  Q      E   ++
Sbjct: 214 EYKFQKEQLDHKLKQLLGLEIESLNEE 240


>gi|226953498|ref|ZP_03823962.1| chromosome segregation ATPase [Acinetobacter sp. ATCC 27244]
 gi|226835783|gb|EEH68166.1| chromosome segregation ATPase [Acinetobacter sp. ATCC 27244]
          Length = 1152

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 100/291 (34%), Gaps = 46/291 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   R+F   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMISRLVEAKPEEMRVFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
             + +   +     R+ D    ++ + R L      +    ++E+Q+  L ++I   +  
Sbjct: 180 TLQHLEHTEQN-LARLEDIAVELKSQLRTLKRQSEAAIQYKTLESQIRHLKIEILSFQAN 238

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
             + L     EY  +      +  L        +    A    + + +   
Sbjct: 239 QSHKLQ---QEYTVEMTELGERFKLVRSESNTIEHDLEATSALFQRLIQQS 286



 Score = 36.4 bits (83), Expect = 7.8,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              +  ++A  S GE+ +  + +  A  RL       AP  +LDE+ A LD+        +
Sbjct: 1039 GKRNSSLALLSGGEKTLTALALVFAIFRL-----NPAPFCVLDEVDAPLDDANVQRYCNL 1093

Query: 338  VTDIGSQI 345
            V ++  Q+
Sbjct: 1094 VKELSEQV 1101


>gi|187939686|gb|ACD38829.1| hypothetical protein PACL_0581 [Pseudomonas aeruginosa]
 gi|187939764|gb|ACD38905.1| hypothetical protein PACL_0647 [Pseudomonas aeruginosa]
          Length = 581

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 41/86 (47%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I  L I+ F+      L   A   +  G NG GK+++L+ ++    G+  R +   D+
Sbjct: 1  MRITKLEITNFQGLRHAALDVSAPVLLVAGHNGAGKSSLLDGVAMAFNGQPRRVSLKKDM 60

Query: 65 TRIGSPSFFSTFARVEGMEGLADISI 90
           ++ +       ARVE ++   ++ +
Sbjct: 61 AQLVTEGAKKGEARVEWLDAAYEVQV 86


>gi|218675373|ref|ZP_03525042.1| ATPase [Rhizobium etli GR56]
          Length = 446

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE--AISFLSPGRGF-----R 57
          +K+  L+I  FR +         Q  + +G+N  GKT +LE  AI+  S   GF     R
Sbjct: 1  MKLNELDIKNFRGFEERGFRLHPQFNLVIGENASGKTTLLEAAAIAVSSWLLGFQGTASR 60

Query: 58 RASYADV 64
               DV
Sbjct: 61 NIRTRDV 67


>gi|313124069|ref|YP_004034328.1| condensin subunit smc [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312280632|gb|ADQ61351.1| Condensin subunit Smc [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 1186

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 98/290 (33%), Gaps = 36/290 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + F    T  VG NG GK+NI EAI ++      +  R  +
Sbjct: 1   MPLTSLILEGFKSFADKTVIDFTKGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGRN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSV-RCLQINDVVIR 111
             DV   GS      +        +      D S   + +  R  +S      IN   +R
Sbjct: 61  MKDVIFAGSQFRKPSNRAEVTMVFDNRHRELDFSADQVSITRRILKSGDNEYLINQQPVR 120

Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDR--MVFAIDPRHR----- 156
           + D     L       S+        D+I +  + ERR   +    V     + +     
Sbjct: 121 LRDVRALFLDSGISQNSLAIISQGRVDQILNSQARERRGIFEEAAGVLHFKQQKQQAQGQ 180

Query: 157 -----RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
                  +I    L+    + L   +  SS     + Q A L   +       I  L+  
Sbjct: 181 LETTNDNLIRINDLVNELEKRLEPLHEQSSLAQEYQFQKAALDEDLKTLLAFEIADLAQE 240

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             E  QK       LS    LD +  QS   L  +  +   + +K D + 
Sbjct: 241 EREVSQKLAKSQELLS---RLDAEVKQSQAKLAAKRQEFQLESQKRDQVQ 287


>gi|153869299|ref|ZP_01998944.1| hypothetical protein BGP_1259 [Beggiatoa sp. PS]
 gi|152074179|gb|EDN71062.1| hypothetical protein BGP_1259 [Beggiatoa sp. PS]
          Length = 254

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 11/102 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           +KI  L I  FR    L + F          T+ VG NG GKT+IL+A+  +      R 
Sbjct: 1   MKIHTLTIKNFRAIEKLSIDFTNNWSQPRPVTLIVGPNGSGKTSILDAVLMVV-----RT 55

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
           +   +  R+     FS    V G    A+I  +     D + 
Sbjct: 56  SENPNNPRLRDGLEFSPAQLVRGRGKNAEIEFEYSIEKDEAN 97


>gi|254422702|ref|ZP_05036420.1| RecF/RecN/SMC N terminal domain, putative [Synechococcus sp. PCC
          7335]
 gi|196190191|gb|EDX85155.1| RecF/RecN/SMC N terminal domain, putative [Synechococcus sp. PCC
          7335]
          Length = 921

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS--FLSPGRGFRRASYA 62
          ++I  + ++ F+ +   +  F        G+NG GKT+ILEAI+    +    +++    
Sbjct: 1  MQILSVALTNFKTHKEQQFDFQLGTNAICGENGAGKTSILEAIAWVLFNYQGSYKK---E 57

Query: 63 DVTRIGSPSFFSTFARVEGMEGL 85
          D+ R G+ S       +   +  
Sbjct: 58 DLIRNGASSAQVRVVFISSRDSR 80


>gi|28378330|ref|NP_785222.1| cell division protein Smc [Lactobacillus plantarum WCFS1]
 gi|28271165|emb|CAD64070.1| cell division protein Smc [Lactobacillus plantarum WCFS1]
          Length = 1185

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +++K L IS F+++A   ++ F A  T  VG NG GK+NI+EAI   L     +  R   
Sbjct: 1   MQLKSLEISGFKSFADKTKIDFQAGMTGIVGPNGSGKSNIIEAIRWVLGEQAVKSLRGTK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS +      A+V      +D  + L+  +    R L  N 
Sbjct: 61  MTDVIFAGSANRKPLNMAKVTITFDNSDHFLPLDYAEVSITRKLFRNG 108


>gi|134045282|ref|YP_001096768.1| SMC domain-containing protein [Methanococcus maripaludis C5]
 gi|132662907|gb|ABO34553.1| SMC domain protein [Methanococcus maripaludis C5]
          Length = 993

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 104/277 (37%), Gaps = 47/277 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRASY 61
           + IK + +  FR++ +  + F+   T  +G NG GK++I +A++F      G  FR    
Sbjct: 1   MIIKNIKMENFRSHRNTSINFNKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFR---I 57

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--------VIRVV 113
            ++ + GS SF      +E         +K +   +++   L +N          + + +
Sbjct: 58  ENLMQQGSASF---SVELEFEMMGNIYLVKRKRFQNKTDDKLYVNGKLNAESASEINKKI 114

Query: 114 DELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           +E+ +     +          +  +      +R+  + +++          +  +E+   
Sbjct: 115 EEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLG---------IEKYEKA-S 164

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            +  ++ + Y        +E ++ +          E++  L  L  E  + E      L 
Sbjct: 165 EKMNIVKKSY--EEMLFKLEGELVQE--------PEILENLEKLKNEVSESEILKEEILK 214

Query: 228 LTGFLDG---KFDQSFCALKEEYAK-KLFDGRKMDSM 260
               L+    + +    +++E++A+  L      D +
Sbjct: 215 KYENLEKLKLEKNSELISMEEKFAENNLLKENLKDII 251



 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           + D  +      +    G  GEQ  V + + L    +          ++LDE +A+LDED
Sbjct: 890 KDDYSLIVDGLPVETLSG--GEQIAVSLALRLG---ISKAVCNNIECIILDEPTAYLDED 944

Query: 330 KRNALFRI---VTDIGSQIFMTGTDKSVFDSLNET 361
           +R  L  I   +  I     +T       + + + 
Sbjct: 945 RRKNLLNIFKNIKTINQMAIIT--HHQELEQIADN 977


>gi|327470652|gb|EGF16108.1| cell division protein Smc [Streptococcus sanguinis SK330]
          Length = 1178

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 59/340 (17%), Positives = 116/340 (34%), Gaps = 43/340 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNRDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R    E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKKTE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKIN----IARVEMINALSSLIMEY 215
             +      L       Y   S    +E Q AE   +        R   ++ L + +   
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQ-AETAKRFLSLDGQRRELYLDVLVAQLTAN 237

Query: 216 VQKENFPHIKLS-----LTGFLDGKFD-----QSFCALKEEYAKKLFDGRKMDSMSRRTL 265
            ++       L+     L  +   + +     Q+  A + E  + L D +       R +
Sbjct: 238 KERLTKAEEDLTNIQQELAAYYSKRDELEVENQTLKAKRHELNQTLSDNQASLLELTRLI 297

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
               R   +          +     E+++  +   LA   
Sbjct: 298 SDLERQIDLSKLESSQAATSRREN-EERLATLSEKLAQIE 336



 Score = 38.0 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|295135054|ref|YP_003585730.1| P-loop containing nucleoside triphosphate hydrolase [Zunongwangia
           profunda SM-A87]
 gi|294983069|gb|ADF53534.1| P-loop containing nucleoside triphosphate hydrolase [Zunongwangia
           profunda SM-A87]
          Length = 643

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 60/380 (15%), Positives = 113/380 (29%), Gaps = 79/380 (20%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I  FR    + L F  +  I +G+NG  K+ +++AI  L            D+
Sbjct: 1   MYLAKLTIENFRGIKKMILEFQKRINILIGENGSNKSAVIDAIRLLYNM----GEQLRDL 56

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                   FS F   E +    D SI ++      +   +   +       L +++    
Sbjct: 57  -----SVGFSDFH--ESVTTNTDGSITIDRSSKIKI-SFEFRGLSASQKGALYEYM---V 105

Query: 125 LVPSMDR-------------------------IFSGLSMERRRFLDRMVFAIDPRHRRRM 159
           + P  D                             G   + + F    +F     +   +
Sbjct: 106 IDPEDDENEYAGITLTFEDKGGKYPVSSYYTGNVEGQRADYKTF---EIFQ--HYYLSGL 160

Query: 160 IDFER-LMRGRNRLL----TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
            D  + L+  R  +L          +   + IE  M +   ++              + E
Sbjct: 161 RDSTKDLLSNRGNVLGRVIKRRVEKNESEAKIEQIMTDANDRLLE---------QPEVSE 211

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
                N  ++      F D +        K EY                  I P+     
Sbjct: 212 TRSGVN-DNLSSIYQRFRDNQIGLQIEQSKTEYI--------------VNAIKPYLPHDR 256

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNA 333
           V       ++   S G+  ++ +   L   +            LL++E  AHL    + +
Sbjct: 257 VLLSGDGFSLWQNSLGQNNLIYIATVLGDIKHQIEENKIPHFALLIEEPEAHLHPQLQLS 316

Query: 334 LFRIVTD----IGSQIFMTG 349
           L   + D      SQ+F+T 
Sbjct: 317 LCGFLRDSSTSKNSQLFITS 336


>gi|254556538|ref|YP_003062955.1| cell division protein Smc [Lactobacillus plantarum JDM1]
 gi|300767267|ref|ZP_07077179.1| cell division protein Smc [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180481|ref|YP_003924609.1| cell division protein Smc [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254045465|gb|ACT62258.1| cell division protein Smc [Lactobacillus plantarum JDM1]
 gi|300495086|gb|EFK30242.1| cell division protein Smc [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308045972|gb|ADN98515.1| cell division protein Smc [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 1185

 Score = 60.3 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +++K L IS F+++A   ++ F A  T  VG NG GK+NI+EAI   L     +  R   
Sbjct: 1   MQLKSLEISGFKSFADKTKIDFQAGMTGIVGPNGSGKSNIIEAIRWVLGEQAVKSLRGTK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS +      A+V      +D  + L+  +    R L  N 
Sbjct: 61  MTDVIFAGSANRKPLNMAKVTITFDNSDHFLPLDYAEVSITRKLFRNG 108


>gi|324993857|gb|EGC25776.1| cell division protein Smc [Streptococcus sanguinis SK405]
          Length = 1178

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 117/352 (33%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            ++  A  E +  +   ++ Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 ERLTQA-EEDLRNIQQELVAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|282857424|ref|ZP_06266657.1| RecF/RecN/SMC family protein [Pyramidobacter piscolens W5455]
 gi|282584709|gb|EFB90044.1| RecF/RecN/SMC family protein [Pyramidobacter piscolens W5455]
          Length = 879

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 90/283 (31%), Gaps = 34/283 (12%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + I+ L +  F+++  +  L F    T  VG NG GK+NIL+ + ++   S     R   
Sbjct: 1   MFIERLTLKNFKSFGGTHELPFAPGFTAIVGPNGSGKSNILDGLRWVLGESGAARLRITR 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIK--LETRDDRSVRCLQINDVVIRVVDELNK 118
            +D+   GS +  S  A  +    L D   +  L    D S   L +N V +R+ D    
Sbjct: 61  QSDLIFQGS-AGLSEAAETDVALDLNDGGGRGSLRRHLDASGGALYVNGVRMRIQD--LT 117

Query: 119 HLRISWLVPSMDRIFSGL----------SMERRRFLDRMVFAIDPRHRRRMIDFER---- 164
             +  W +      F G             +RR         ++      +   +R    
Sbjct: 118 QFKQQWRLEGDRSAFIGQGEVGAAVLQKPFQRR-------LQLEELFGIDLYRKKRDGAL 170

Query: 165 -LMRGRNRLLTEGYFDSSWCSSIEAQMAE--LGVKINIARVEMINALSSLIMEYVQKENF 221
             ++     L   +           ++A      +      E +  L  ++  Y +    
Sbjct: 171 DELKQSGDELLRLHTLMGELRVRREEIAPDLQNARKAKDYQERLEDLRRVLYHYRRCNEE 230

Query: 222 PHIK-LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
             +K L       G    S       +   L   R   S   R
Sbjct: 231 ARLKTLERKHEEAGSQLDSAGRWASLWKNALERLRARGSEYAR 273


>gi|38304051|gb|AAH61906.1| SMC2 protein [Homo sapiens]
          Length = 212

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 18/123 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEVHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVI 110
           V  
Sbjct: 120 VNA 122


>gi|30173243|sp|Q8CG48|SMC2_MOUSE RecName: Full=Structural maintenance of chromosomes protein 2;
           Short=SMC protein 2; Short=SMC-2; AltName:
           Full=Chromosome-associated protein E; AltName:
           Full=FGF-inducible protein 16; AltName: Full=XCAP-E
           homolog
 gi|26986198|emb|CAD59182.1| SMC2 protein [Mus musculus]
          Length = 1191

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 99/280 (35%), Gaps = 34/280 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           ++ D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NFQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +      +M  ++  +  +
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE--YQKVMREIEHLSRLY 234

Query: 224 IKLSLTGFLDGKFDQSFCALKE------EYAKKLFDGRKM 257
           I        D K ++S   LKE         + L +  K 
Sbjct: 235 IAYQFLRAEDTK-ERSAGELKEMQDKIVNLQEVLSENEKK 273


>gi|317500482|ref|ZP_07958706.1| chromosome segregation protein [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898237|gb|EFV20284.1| chromosome segregation protein [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 1186

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 26/210 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ ++  F    T  VG NG GK+N+ +A+   L     +  R  +
Sbjct: 1   MYLKSIEVQGFKSFANKIKFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGT 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    +  +  T   +  R       IN    R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNADHKLPVDYEEVTVTRKLYRSGESEYLINGASCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+ +   +
Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKNLS-VK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +L   R  L             +E Q+  L
Sbjct: 180 KLEEERMNLTRVN----DILQELEKQLGPL 205



 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 162  FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
            +   M+ R+  LT+  +       ++ ++ +LG     A  +  N          Q ++ 
Sbjct: 953  YNHAMKLRDENLTDLAYMKRQIQELKNEIRKLGTVNVNAIEDFKNISERYAFLKNQHDDL 1012

Query: 222  PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI------- 274
               + +L   +    D+   A+++++A++    ++  +   R L G  +  L        
Sbjct: 1013 VEAEQTLMQII----DELDAAMRKQFAEQFLKIKEEFNTVFRQLFGGGKGTLELMEDEDI 1068

Query: 275  ----VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
                +    +            S GE+ +  + +  A           +P  LLDEI A 
Sbjct: 1069 LEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA-----IQNLKPSPFCLLDEIEAA 1123

Query: 326  LDEDKRNALFRIVTDI--GSQIFM 347
            LD++      + +  +   +Q  +
Sbjct: 1124 LDDNNVTRFAQYLHKLTKNTQFIV 1147


>gi|153853252|ref|ZP_01994661.1| hypothetical protein DORLON_00646 [Dorea longicatena DSM 13814]
 gi|149754038|gb|EDM63969.1| hypothetical protein DORLON_00646 [Dorea longicatena DSM 13814]
          Length = 1186

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 27/224 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ ++  F    T  VG NG GK+N+ +A+   L     +  R  +
Sbjct: 1   MYLKSIEVQGFKSFANKIKFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    +  +  T   +  R       IN    R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNSDHKLPVDYEEVTVARKLYRSGESEYLINGRACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+ M   +
Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPDERRELFDEAAGIVKFKRRKSMS-VK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           +L   R  L+          S +E Q+  L  + +    E +  
Sbjct: 180 KLEDERQNLVRVN----DILSELEKQVGPL-ERQSEKAREYLKR 218



 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 89/272 (32%), Gaps = 33/272 (12%)

Query: 87   DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146
            +I +++E          + +       +E++KH+        +D+    L  +R  + + 
Sbjct: 884  EIKLQIERSKREREELNKRHKSFFEKREEISKHMT------DLDKEVYRLESQREGYEEA 937

Query: 147  MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG---------VKI 197
                I+       +        RN  LT+          ++ ++  LG          K 
Sbjct: 938  SEKQINYMWEEYELTLNHAKELRNPNLTDLADMKRRIQELKGEIRALGNVNVNAIEEYKS 997

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
               R E +      ++E    E    I   L   +  +F + F  +  E+ +   +    
Sbjct: 998  VSERYEFLKGQHDDLVE--AAETLEQIIEELDNAMRKQFKEQFARIAAEFDQVFKEMF-- 1053

Query: 258  DSMSRRTLIGPHRSDLI---VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISN 309
                + TL      D++   +    +            S GE+ +  + +  A       
Sbjct: 1054 -GGGKGTLELMEDEDILEAGIRIIAQPPGKKLQNMMQLSGGEKALTAIALLFA-----IQ 1107

Query: 310  TTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
                +P  LLDEI A LD++  +   + +  +
Sbjct: 1108 NLKPSPFCLLDEIEAALDDNNVDRFAQYLHKL 1139


>gi|331089417|ref|ZP_08338316.1| chromosome segregation protein SMC [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330404785|gb|EGG84323.1| chromosome segregation protein SMC [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 1186

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 26/210 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ ++  F    T  VG NG GK+N+ +A+   L     +  R  +
Sbjct: 1   MYLKSIEVQGFKSFANKIKFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGT 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    +  +  T   +  R       IN    R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNADHKLPVDYEEVTVTRKLYRSGESEYLINGASCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+ +   +
Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKNLS-VK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +L   R  L             +E Q+  L
Sbjct: 180 KLEEERMNLTRVN----DILQELEKQLGPL 205



 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 162  FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
            +   M+ R+  LT+  +       ++ ++ +LG     A  +  N          Q ++ 
Sbjct: 953  YNHAMKLRDENLTDLAYMKRQIQELKNEIRKLGTVNVNAIEDFKNISERYAFLKNQHDDL 1012

Query: 222  PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI------- 274
               + +L   +    D+   A+++++A++    ++  +   R L G  +  L        
Sbjct: 1013 VEAEQTLMQII----DELDAAMRKQFAEQFLKIKEEFNTVFRQLFGGGKGTLELMEDEDI 1068

Query: 275  ----VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
                +    +            S GE+ +  + +  A           +P  LLDEI A 
Sbjct: 1069 LEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA-----IQNLKPSPFCLLDEIEAA 1123

Query: 326  LDEDKRNALFRIVTDI--GSQIFM 347
            LD++      + +  +   +Q  +
Sbjct: 1124 LDDNNVTRFAQYLHKLTKNTQFIV 1147


>gi|327461015|gb|EGF07348.1| cell division protein Smc [Streptococcus sanguinis SK1057]
          Length = 1178

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 117/352 (33%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            ++  A  E +  +   ++ Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 ERLTQA-EEDLRNIQQELVAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|254578968|ref|XP_002495470.1| ZYRO0B12122p [Zygosaccharomyces rouxii]
 gi|238938360|emb|CAR26537.1| ZYRO0B12122p [Zygosaccharomyces rouxii]
          Length = 1109

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK + +  F  +    L    +    VG+NG GK+ IL AI+     R     R  S  D
Sbjct: 75  IKKVVLWNFMCHEHFELELGPRLNFIVGNNGSGKSAILTAITVGLGARAMDTNRGNSLKD 134

Query: 64  VTRIGSPS 71
           + R G  S
Sbjct: 135 LIREGCHS 142


>gi|153816162|ref|ZP_01968830.1| hypothetical protein RUMTOR_02410 [Ruminococcus torques ATCC 27756]
 gi|145846497|gb|EDK23415.1| hypothetical protein RUMTOR_02410 [Ruminococcus torques ATCC 27756]
          Length = 1186

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 26/210 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ ++  F    T  VG NG GK+N+ +A+   L     +  R  +
Sbjct: 1   MYLKSIEVQGFKSFANKIKFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGT 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    +  +  T   +  R       IN    R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNADHKLPVDYEEVTVTRKLYRSGESEYLINGASCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+ +   +
Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKNLS-VK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +L   R  L             +E Q+  L
Sbjct: 180 KLEEERMNLTRVN----DILQELEKQLGPL 205



 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 162  FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
            +   M+ R+  LT+  +       ++ ++ +LG     A  +  N          Q ++ 
Sbjct: 953  YNHAMKLRDENLTDLAYMKRQIQELKNEIRKLGTVNVNAIEDFKNISERYAFLKNQHDDL 1012

Query: 222  PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI------- 274
               + +L   +    D+   A+++++A++    ++  +   R L G  +  L        
Sbjct: 1013 VEAEQTLMQII----DELDAAMRKQFAEQFLKIKEEFNTVFRQLFGGGKGTLELMEDEDI 1068

Query: 275  ----VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
                +    +            S GE+ +  + +  A           +P  LLDEI A 
Sbjct: 1069 LEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA-----IQNLKPSPFCLLDEIEAA 1123

Query: 326  LDEDKRNALFRIVTDI--GSQIFM 347
            LD++      + +  +   +Q  +
Sbjct: 1124 LDDNNVTRFAQYLHKLTKNTQFIV 1147


>gi|14520575|ref|NP_126050.1| chromosome segregation protein smc1 [Pyrococcus abyssi GE5]
 gi|5457791|emb|CAB49281.1| smc1 chromosome segregation protein [Pyrococcus abyssi GE5]
          Length = 1177

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 35/226 (15%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
           I+ L +  F++Y    + + F    T  VG NG GK+NI +AI F+  G      R +  
Sbjct: 4   IEKLELKGFKSYGNRKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRI 63

Query: 62  ADVTRIGSPS-------FFSTFARVEGM---EGLADISIKLETRDDRSVRCLQINDVVIR 111
           +D+   GS S         + +   E         ++ IK     D       +N     
Sbjct: 64  SDLIFAGSKSEPPAKYAEVAIYFNNEDRGFPIDEDEVVIKRRVYPDGRS-SYWLNGRRA- 121

Query: 112 VVDELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
              E+   L  + + P    I              +ERR  LD +    +          
Sbjct: 122 TRSEILDVLSAAMISPEGYNIILQGDITKFIKMSPLERRLILDDISGIAEYD-----AKK 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           E+ ++     L +   + +    +  ++ +   K+   R + +  L
Sbjct: 177 EKALQE----LKQAEENLARVDLLIREVKKQLDKLEKERNDALRYL 218


>gi|291546253|emb|CBL19361.1| condensin subunit Smc [Ruminococcus sp. SR1/5]
          Length = 1086

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 108/305 (35%), Gaps = 48/305 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++A  +   F    T  VG NG GK+N+ +A+ ++      +  R  +
Sbjct: 1   MYLKNIEVQGFKSFAQKINFEFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGGN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      SF S    ++  +    +  +  T   R  R      +IN    R
Sbjct: 61  MQDVIFSGTELRKPLSFASVAITLDNSDHKLPVDFEEVTVTRRLYRSGESEYRINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +    +RR     
Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVK--FKRRKNTTL 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINAL--SSLIMEYV 216
           + +    + L      +   S +  Q+  L       KI +A+ E +  L  +  ++EY 
Sbjct: 179 KKLEEEQQNLVRV---TDILSELTKQLEPLERQSETAKIYLAKRENLKELDINMFLLEYE 235

Query: 217 QKENFPHIKLSLTGFLDGKFDQS-------------FCALKEEYAKKLFDGRK--MDSMS 261
              N        T   + +  ++                + EE  +++   R+   D   
Sbjct: 236 HTGNLIRELEEKTRIAENQLKEAQDAHSRTKDEYERLEKILEELNERMEALREESRDRAI 295

Query: 262 RRTLI 266
           R+  +
Sbjct: 296 RKQQL 300


>gi|320334437|ref|YP_004171148.1| SMC domain-containing protein [Deinococcus maricopensis DSM 21211]
 gi|319755726|gb|ADV67483.1| SMC domain protein [Deinococcus maricopensis DSM 21211]
          Length = 1095

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 10/117 (8%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
           I  + +  F+++A  +RL F    T  +G NG GK+N++EAI +    +  R  R     
Sbjct: 2   IASITLQGFKSFADRVRLEFGPGVTAVIGPNGSGKSNVVEAIRWATHNARARELRAGRAT 61

Query: 63  DVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           ++   GS              +  + G A +++      D +     +N   +R  D
Sbjct: 62  ELIFHGSGGKAPLGLAEVTVELRDLPGRARLNLARRIYRDGTAEQD-VNGRAVRARD 117


>gi|325685924|gb|EGD27989.1| cell division protein Smc [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 1186

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 98/290 (33%), Gaps = 36/290 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + F    T  VG NG GK+NI EAI ++      +  R  +
Sbjct: 1   MPLTSLILEGFKSFADKTVIDFTKGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGRN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSV-RCLQINDVVIR 111
             DV   GS      +        +      D S   + +  R  +S      IN   +R
Sbjct: 61  MKDVIFAGSQFRKPLNRAEVTMVFDNRHRELDFSADQVSITRRILKSGDNEYLINQQPVR 120

Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDR--MVFAIDPRHR----- 156
           + D     L       S+        D+I +  + ERR   +    V     + +     
Sbjct: 121 LRDVRALFLDSGISQNSLAIISQGRVDQILNSQARERRGIFEEAAGVLHFKQQKQQAQGQ 180

Query: 157 -----RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
                  +I    L+    + L   +  SS     + Q A L   +       I  L+  
Sbjct: 181 LETTNDNLIRINDLVNELEKRLEPLHEQSSLAQEYQFQKAALDEDLKTLLAFEIADLAQE 240

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             E  QK       LS    LD +  QS   L  +  +   + +K D + 
Sbjct: 241 EREVSQKLAKSQELLS---RLDAEVKQSQAKLAAKRQEFQLESQKRDQVQ 287


>gi|301058624|ref|ZP_07199627.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300447272|gb|EFK11034.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 442

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-----RA 59
          +K+K ++I  FR    +++  D   T+FVG N  GKT+      +   G  FR      +
Sbjct: 1  MKLKKIHIKNFRRLEDVQIDLDDGETVFVGPNNSGKTSATVIFRYFLKGNEFRIHDFSVS 60

Query: 60 SYADVTRIGSPS 71
             ++   GS S
Sbjct: 61 RIREIDHFGSES 72


>gi|253681396|ref|ZP_04862193.1| chromosome segregation protein SMC [Clostridium botulinum D str.
           1873]
 gi|253561108|gb|EES90560.1| chromosome segregation protein SMC [Clostridium botulinum D str.
           1873]
          Length = 1184

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L I  F+++A    LVF    T  VG NG GK+NIL+A+ ++   +     R   
Sbjct: 1   MFLKSLEIRGFKSFADKTELVFKEGITAIVGPNGSGKSNILDAVKWVLGEQSIKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+              ++  +G   I    + +  R  RS      IN+   R
Sbjct: 61  MQDVIFSGTEFRKPVGLAQVNLILDNSDGELPIEYSEVTIMRRLFRSGESEYYINNTRCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          ++ + SG   ERR  L+
Sbjct: 121 LKDIQELFMDTGIGKEGYSIIGQGKIEALLSGKPEERRSLLE 162



 Score = 36.4 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 61/185 (32%), Gaps = 32/185 (17%)

Query: 183  CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
                ++ +A+LGV    A  +    +        QKE+    K  L   +    D+    
Sbjct: 977  IEIYKSDIAKLGVVNLGAIQQYKELMEKYTFMKEQKEDLIQAKEELLNVVKEMTDKMKTV 1036

Query: 243  LKEEYAKKLFDGRK---MDSMSRRTLIGPHRSDLIVDYCD---------------KAITI 284
              E +  KL +       +           ++DLI++  D               K   I
Sbjct: 1037 FHENF-NKLRENFSETFRELFKG------GKADLILESGDELTSNIEINVQPPGKKLQNI 1089

Query: 285  AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--G 342
               S GE+ +  + +  A  ++        P  +LDEI A LD+   +     +      
Sbjct: 1090 NLMSGGEKGLSAIALLFAILKM-----KPTPFCILDEIEAALDDSNVSRYSEFLRKFSSN 1144

Query: 343  SQIFM 347
            +Q  +
Sbjct: 1145 TQFII 1149


>gi|228998624|ref|ZP_04158211.1| Chromosome partition protein smc [Bacillus mycoides Rock3-17]
 gi|229006124|ref|ZP_04163812.1| Chromosome partition protein smc [Bacillus mycoides Rock1-4]
 gi|228755200|gb|EEM04557.1| Chromosome partition protein smc [Bacillus mycoides Rock1-4]
 gi|228761092|gb|EEM10051.1| Chromosome partition protein smc [Bacillus mycoides Rock3-17]
          Length = 1189

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIVGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVSVTRRVSRSG 108


>gi|222056263|ref|YP_002538625.1| SMC domain protein [Geobacter sp. FRC-32]
 gi|221565552|gb|ACM21524.1| SMC domain protein [Geobacter sp. FRC-32]
          Length = 992

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++I  +++   +++    + F     +  G NG+GK+ I EAI +   G
Sbjct: 1  MQILSIHLKNIKSHRDSEIHFSPGINVLSGPNGIGKSTIFEAIGYAMFG 49



 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 49/148 (33%), Gaps = 20/148 (13%)

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
           V+    + E++  L + + + V  +     +  ++   D  +     A +E Y    +  
Sbjct: 826 VQALKKKEELVKFLRNKVFKNVSAQLSERFREEISLRADSIYRTIAEADEELYWGDNYQI 885

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
              D                     +  +    S G+    +V + LA  + I       
Sbjct: 886 VLRDMSDG---------------AIRERSDDQLSGGQVMSAVVALRLALLQTIGAR---- 926

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIG 342
            +   DE +++LD  +R+ L +    I 
Sbjct: 927 -VAFFDEPTSNLDASRRSNLAQAFRAID 953


>gi|309356249|emb|CAP37488.2| CBR-HIM-1 protein [Caenorhabditis briggsae AF16]
          Length = 1289

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 7/145 (4%)

Query: 1   MTNRIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           +  +  +  L I  F++Y    +    ++ T  +G NG GK+N+++AISF+   R    R
Sbjct: 23  LPGKGHLHTLEIENFKSYKGKHIIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPTSLR 82

Query: 58  RASYADVTRIGSP--SFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVD 114
              Y D+   G+P         RV      AD +IK   R  +       ++  ++    
Sbjct: 83  VKKYTDLI-HGAPINRPVGKKCRVTMNYKYADGTIKAFARGVNNGTSENYLDGQLVTKEA 141

Query: 115 ELNKHLRISWLVPSMDRIFSGLSME 139
              +   I   + + + +    ++E
Sbjct: 142 YAAEMESIQIFIKARNFLVYQGAIE 166


>gi|308234555|ref|ZP_07665292.1| condensin subunit Smc [Atopobium vaginae DSM 15829]
 gi|328944153|ref|ZP_08241618.1| chromosome segregation protein Smc [Atopobium vaginae DSM 15829]
 gi|327492122|gb|EGF23896.1| chromosome segregation protein Smc [Atopobium vaginae DSM 15829]
          Length = 1188

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 94/269 (34%), Gaps = 29/269 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEA-ISFLS--PGRGFRRAS 60
           + +K L +  F+++A    ++FD   T+ VG NG GK+N+ +A +  L     R  R  +
Sbjct: 1   MYLKSLTLKGFKSFADKTEMIFDPGLTVVVGPNGSGKSNVSDAMLWVLGEQGPRNLRAQA 60

Query: 61  YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G S     +FA V  +   +D ++ ++  D    R +         IN    R
Sbjct: 61  MEDVIFAGSSKRDAVSFAEVTLVLNNSDHTLPIDFADVAITRRMYRSGESEYLINGAAAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I      +RR  ++        R R+++ + +
Sbjct: 121 LRDINDILHDSGLGKETHSIISQGKLDAILVSKPQDRRDLIEEAAGIAKHRRRKKLAEKK 180

Query: 164 RLM--RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             +     NR+             +E QM          R   + ++          ++ 
Sbjct: 181 LELMATHLNRIKDVKREIHKQLLPLEKQMG------VANRARELTSVLQRSKTMCAVDDL 234

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             +K           + +      E+ K+
Sbjct: 235 SALKARYEQLSSELKEANASVELLEFRKQ 263


>gi|190344508|gb|EDK36192.2| hypothetical protein PGUG_00290 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1256

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 107/287 (37%), Gaps = 30/287 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           ++  L +  F++Y  + ++ F     T  +G NG GK+N+++AISF+        R  + 
Sbjct: 48  RLVGLELYNFKSYRGTCKVGFGDSFFTSIIGPNGAGKSNMMDAISFVLGVNSSQLRSRNL 107

Query: 62  ADVT---RIGSPSFFS--------TFARVEGMEGLADIS-IKLETRDDRSVRC-LQINDV 108
            D+    RIG  S           T A V+ +    D S ++L+     S     +IN+ 
Sbjct: 108 QDLIYRGRIGGDSAADTSFEHSNPTSAYVKAIYEKDDGSQLELKRTIGSSGNGDYKINNK 167

Query: 109 VIRVV---------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRR 157
            +            + L K          +++I S    +  + ++ +  +  + P + +
Sbjct: 168 NVTAYQYSMVLKEENILIKARNFLVFQGDVEQIASQSPRDLAQLIETISGSGELKPEYDK 227

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIMEYV 216
              +++       ++ +     +S     + Q+AE        +  + I  L  L   Y 
Sbjct: 228 LKDEYDAAHEFTTQVFSHKKTLNSESRQYKEQLAEKETFETKLQERVDITKLLHLYKLYH 287

Query: 217 QKENFPHIKLSLTG-FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            ++    I   +     +    +S    K+E   KL   +  D + +
Sbjct: 288 NEQKHAQISSEIGSKTEEIAKLESQIEEKKELYDKLVSAQAKDVLRQ 334


>gi|149280201|ref|ZP_01886324.1| ATP binding protein [Pedobacter sp. BAL39]
 gi|149229038|gb|EDM34434.1| ATP binding protein [Pedobacter sp. BAL39]
          Length = 462

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          ++I  L ++  R +   +L F     + VG NGVGKT +LEA+     
Sbjct: 1  MRINTLELTNVRGFTHAKLEFQPGFNLIVGINGVGKTTVLEALRISMT 48


>gi|293609094|ref|ZP_06691397.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829667|gb|EFF88029.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1149

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGSYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   R+F   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRVFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192
             + +   +     R+ D    ++ + + L      +    ++E+Q+           AE
Sbjct: 180 TLQHLEHTEQN-LSRLDDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             V++       +N L         + +     L  T  L  +  Q    L++E+ + 
Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLEATSALFQRLIQQSSPLQQEWQQA 296


>gi|319641270|ref|ZP_07995969.1| hypothetical protein HMPREF9011_01566 [Bacteroides sp. 3_1_40A]
 gi|317387143|gb|EFV68023.1| hypothetical protein HMPREF9011_01566 [Bacteroides sp. 3_1_40A]
          Length = 531

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPG 53
          I+ + I  F+      + F  +  + VG+NGVGK+ ++EAIS  L  G
Sbjct: 2  IERIIIKNFKGIKEADISFHDKINVIVGNNGVGKSTLIEAISLTLGHG 49


>gi|296282454|ref|ZP_06860452.1| chromosome segregation protein SMC [Citromicrobium bathyomarinum
           JL354]
          Length = 1140

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 85/244 (34%), Gaps = 29/244 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++I+ L +S F+++     L  +   T  VG NG GK+N+LEAI ++   +  +  R   
Sbjct: 1   MEIRQLRLSGFKSFVEPATLRIEPGLTGVVGPNGCGKSNLLEAIRWVMGETSAKSMRSGG 60

Query: 61  YADVTRIG-SPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--- 114
             DV   G +      FA V   G +   D    +   +  +    ++N   +R  D   
Sbjct: 61  MEDVIFAGTAERPPRQFAEVVLTGADDSGDELEVVRRIERGAGSAYRVNGNDVRAKDVAL 120

Query: 115 -----ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                    H         +  + +   +ERR  L+     I   H R           R
Sbjct: 121 AFADAATGAHSPALVSQGKIAHMIAAKPVERRAMLE-EAAGIAGLHVR-----------R 168

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
               ++     S  + +E  +A L  +I   R +     +    +   +      +L   
Sbjct: 169 KDAESKLRQTESNLARLEDLLAGLDSQITSLRRQ--AKQAERYAKLTDEIGVAEARLVFA 226

Query: 230 GFLD 233
            + D
Sbjct: 227 RWRD 230


>gi|281417644|ref|ZP_06248664.1| chromosome segregation protein SMC [Clostridium thermocellum JW20]
 gi|281409046|gb|EFB39304.1| chromosome segregation protein SMC [Clostridium thermocellum JW20]
 gi|316940319|gb|ADU74353.1| chromosome segregation protein SMC [Clostridium thermocellum DSM
           1313]
          Length = 1190

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 99/285 (34%), Gaps = 35/285 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A  ++L F++  T  VG NG GK+NI +AI   L     +  R   
Sbjct: 1   MHLKRLEIQGFKSFADRIQLEFNSGITAVVGPNGSGKSNISDAIRWVLGEQSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       F       +  +G+  I    + +  R  RS      IN    R
Sbjct: 61  MEDVIFAGTEHRKPMGFAEVSLTFDNSDGVLPIDFSEVTVTRRVYRSGESEYMINKTPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D     L                +D I S  S +RR   +     +   ++ R  + E
Sbjct: 121 LKDIYELFLDTGIGKDGYSIIGQGRVDEILSSKSEDRRAIFEEASGIMK--YKVRKQEAE 178

Query: 164 RLMRG-RNRLLTEG---YFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEY 215
           + +   R  LL          +    +  Q +E+  +    R  +    +N     I  Y
Sbjct: 179 KKLEMTRQNLLRINDIIAELENQLEPLREQ-SEVAKRYLGLRETLKVLEVNVYIENIARY 237

Query: 216 VQKE-NFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKM 257
            +K         S+   +D +    +   +L +     L D    
Sbjct: 238 KEKIKELEENYASVKDNIDSENKRLEEITSLNQRNLSILKDMEGR 282


>gi|331002415|ref|ZP_08325933.1| chromosome segregation protein SMC [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330410231|gb|EGG89665.1| chromosome segregation protein SMC [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 1185

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  R  +
Sbjct: 1   MYLKRIEIQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVSDAVRWVLGEQSAKQLRGGN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+       F      ++  +   DI  K  T   R  R       IN    R
Sbjct: 61  MQDVIFAGTELRKPLGFAYVAITLDNSDHKLDIDFKEVTVSRRLFRSGESEYLINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          +D++ +G   ERR   D
Sbjct: 121 LKDISELFFDTGIGKDGYSIIGQGQVDKVLNGKPEERRELFD 162


>gi|302528023|ref|ZP_07280365.1| DNA repair protein RecN [Streptomyces sp. AA4]
 gi|302436918|gb|EFL08734.1| DNA repair protein RecN [Streptomyces sp. AA4]
          Length = 594

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/254 (17%), Positives = 86/254 (33%), Gaps = 43/254 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---- 56
           M   ++I+ L +          L   A  T+  G+ G GKT ++  +  LS GR      
Sbjct: 1   MLAEMRIQGLGV-----IEEALLELHAGFTVVTGETGAGKTMVVTGLHLLSGGRAEASKV 55

Query: 57  RRASYADVT-------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
           R               +  + +   T A  +  E  + I+++    D RS   L    V 
Sbjct: 56  RNGMLKAFVEGRFTVGKDDAAARIVTDAGADVDEDGSVIALRTVAADGRSRAHLGGRSVP 115

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---- 165
           + V+ EL++ +          R+      E+R  +DR          R + ++ R+    
Sbjct: 116 VGVLSELSEQVIAVHGQNDQLRLLR--PAEQRAVIDRFAGDAV---GRPLAEYRRVREEW 170

Query: 166 ------MRGRNRLLTEGYFDSSWCS----SIEA------QMAELGVKINIARVEMINALS 209
                 +  R+    E    +         I+A      +  EL  +I   R+  ++ L 
Sbjct: 171 LSVLTELSERSNRSREMAQQADLLKHGLNEIDAVAPEPGEDVELTEQI--KRLAAVDELR 228

Query: 210 SLIMEYVQKENFPH 223
           ++  E     +   
Sbjct: 229 AMATEAHAAVSGAQ 242


>gi|50084058|ref|YP_045568.1| putative chromosome segregation ATPase [Acinetobacter sp. ADP1]
 gi|49530034|emb|CAG67746.1| putative chromosome segregation ATPases [Acinetobacter sp. ADP1]
          Length = 1149

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 89/235 (37%), Gaps = 43/235 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L ++ F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLAGFKSFADSATLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G+              F +T+ ++ G     +  + +  + +R  +    +N 
Sbjct: 61  MQDVIFTGTAKRKPVGMASVELRFENTYGKLGGTYNAYN-ELAVRRQVNRDGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   RIF   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLIDAKPEEMRIFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198
             + +   +     R+ D  + ++G+ + L      +     +E Q+  L ++I 
Sbjct: 180 TLQHLEHTEQN-LARLEDIAQELKGQLKSLKRQSEAAVQYKQLEQQIRTLKIEIL 233



 Score = 39.5 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              +  ++A  S GE+ +  + +  A  RL       AP  +LDE+ A LD+        +
Sbjct: 1039 GKRNSSLALLSGGEKALTALALVFAIFRL-----NPAPFCVLDEVDAPLDDANVQRFCNL 1093

Query: 338  VTDIGSQI 345
            V ++  Q+
Sbjct: 1094 VKELSEQV 1101


>gi|325687263|gb|EGD29285.1| cell division protein Smc [Streptococcus sanguinis SK72]
          Length = 1178

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQVETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            K+  A  ++ N    L   Y +++       +L      K  +    L ++ A  L   
Sbjct: 239 EKLIKAEEDLTNIQQELAAYYGKRDELEVENQTLK----AKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|228475081|ref|ZP_04059809.1| chromosome segregation protein SMC [Staphylococcus hominis SK119]
 gi|228271066|gb|EEK12454.1| chromosome segregation protein SMC [Staphylococcus hominis SK119]
          Length = 1189

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/279 (18%), Positives = 102/279 (36%), Gaps = 39/279 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDTIGFKSFADRTNVQFDRGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLET----------RDDRSVRCLQINDVV 109
             D+   G+       +A V+     +   +++E           R   S   L  +   
Sbjct: 62  MEDIIFSGAEHRQAQNYAEVQLKLDNSTRGLQIEADDVIVTRRLYRSGESEYYLNNDRAR 121

Query: 110 IRVVDELN-----KHLRISWLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           +R + EL           S +    +D I +   ++RR+ ++     +            
Sbjct: 122 LRDITELFLDSGLGKEAFSIISQGRVDEILNAKPVDRRQIIEESAGVL------------ 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
           +  + +   L +        S +E  + +L       RVE + A +S+  EY+Q  +   
Sbjct: 170 KYKKRKTESLQKLGHTEDNLSRVEDILYDL-----EGRVEPLKAEASIAKEYLQLSKEME 224

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           H  + +T     ++D+    L E          + +   
Sbjct: 225 HSDVVVTVHDINQYDEENRQLDERLNHLKSQQAEKEGQQ 263


>gi|325661267|ref|ZP_08149894.1| hypothetical protein HMPREF0490_00627 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472774|gb|EGC75985.1| hypothetical protein HMPREF0490_00627 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 396

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 101/279 (36%), Gaps = 31/279 (11%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+  L  F    T  VG NG GK+N+ +A+   L     +  R  S
Sbjct: 1   MYLKSIEVQGFKSFANKILFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      S+ S    ++  +    +    + +  +  RS      IN    R
Sbjct: 61  MQDVIFSGTENRRPLSYASVAITLDNADHQLPVDYHEVTVTRKLYRSGESEYLINGTACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+ +    
Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKYLS-VR 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSLIMEYVQK 218
           +L   R  L+          S +E Q+  L       +I + + E +      +      
Sbjct: 180 KLEDERQNLVRVN----DILSELEKQVEPLRRQSETARIYLKKKEELKIYDINMFLMDTI 235

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
                ++ +   F D   + +    K+E  K  ++ ++ 
Sbjct: 236 RLKEQMETAQRSFDDANRELTEAKEKQEALKHAYEKQEQ 274


>gi|75762037|ref|ZP_00741949.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490483|gb|EAO53787.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 971

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 106/334 (31%), Gaps = 59/334 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSGDSDFYINKQSCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHR------ 156
            + ++      S +      I S           S ERR   +     +  + R      
Sbjct: 121 -LKDIIDLFMDSGMGREAFSIISQGKVEEILSSKSEERRGVFEEAAGVLKYKLRKKKAEG 179

Query: 157 ------RRMIDFERLMR---------GRNRLLTEGYF-DSSWCSSIEAQMA-----ELGV 195
                   +   + ++           R   + + Y  +      +EA +      EL  
Sbjct: 180 KLAETQENLNRVQDIIHELSSQVEPLERQASIAKDYLENKEELEKVEAALIVHEIEELHE 239

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY------AK 249
           K    R +  +            +        L G L    D+S  +L+E         +
Sbjct: 240 KWEALRNQFGHNKDEEAKMSTDLQKSEEELEELRGQLQA-VDESVDSLQEVLLLSSKELE 298

Query: 250 KLFDGRK--MDSMSRRTLIGPHRSDLIVDYCDKA 281
           KL   R+   +     T        LIV+  +KA
Sbjct: 299 KLEGQRELLKERKQNATTHCAQLEQLIVELTEKA 332


>gi|328545241|ref|YP_004305350.1| hypothetical protein SL003B_3624 [polymorphum gilvum SL003B-26A1]
 gi|326414983|gb|ADZ72046.1| hypothetical protein SL003B_3624 [Polymorphum gilvum SL003B-26A1]
          Length = 443

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
          +  L+++ FR +A   + F  + T+ V +NG GKT +L+A
Sbjct: 6  LDKLSLTNFRCFAHCEVEFHPRLTVLVAENGSGKTAVLDA 45


>gi|332799149|ref|YP_004460648.1| chromosome segregation protein SMC [Tepidanaerobacter sp. Re1]
 gi|332696884|gb|AEE91341.1| chromosome segregation protein SMC [Tepidanaerobacter sp. Re1]
          Length = 1184

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 95/273 (34%), Gaps = 31/273 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K + +  F+++A  + L F       VG NG GK+NI++AI ++   +     R   
Sbjct: 1   MYLKRIELHGFKSFADRVILEFQPGINAIVGPNGSGKSNIIDAIRWVLGEQSVKTLRGYK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS              ++  + L  +    I L  R  RS      +N    R
Sbjct: 61  LEDVIFAGSNKKKPMGMAEVAITIDNFDNLIPLDYSEIYLVRRTFRSGESEFYLNRTPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D + +  + ERR   +     +   +R R  + E
Sbjct: 121 LKDIQEILIDSGVGKDGYSIISQGQIDEMLTCKAEERRTIFEETAGIVK--YRIRKKEAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +      +          + +  QM  L  + ++A ++    L++   E         
Sbjct: 179 KRLEE---TMDNISRIDDIITELLNQMQPLAAQKDVA-LKY-KELAAAFKEIDINLLLFE 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +    +     K+ +     KE    +L +  +
Sbjct: 234 LD---SKEKHIKYIKEKLEDKETLLTQLRNNIE 263


>gi|315038613|ref|YP_004032181.1| chromosome segregation protein SMC [Lactobacillus amylovorus GRL
           1112]
 gi|312276746|gb|ADQ59386.1| chromosome segregation protein SMC [Lactobacillus amylovorus GRL
           1112]
          Length = 1189

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + F+   T  VG NG GK+NI EAI ++   S  +  R  +
Sbjct: 1   MPLTELVLDGFKSFAEKTTIHFNDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGTN 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS              F   +         + +  R  RS      IN+  +R
Sbjct: 61  MKDVIFAGSQYRKPLNKAEVTLVFDNKDRELAFDADQVSITRRILRSGDSEFLINNQQVR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141
           + D     L  S + P+   I S             +RR
Sbjct: 121 MRDVRALFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158


>gi|229098317|ref|ZP_04229264.1| Chromosome partition protein smc [Bacillus cereus Rock3-29]
 gi|228685215|gb|EEL39146.1| Chromosome partition protein smc [Bacillus cereus Rock3-29]
          Length = 1189

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDVIFAGSETRRAVNVAEVTLTLNNEDQRLPIEYNEVSVTRRVSRSG 108


>gi|229104410|ref|ZP_04235079.1| Chromosome partition protein smc [Bacillus cereus Rock3-28]
 gi|228679108|gb|EEL33316.1| Chromosome partition protein smc [Bacillus cereus Rock3-28]
          Length = 1189

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDVIFAGSETRRAVNVAEVTLTLNNEDQRLPIEYNEVSVTRRVSRSG 108


>gi|229117334|ref|ZP_04246712.1| Chromosome partition protein smc [Bacillus cereus Rock1-3]
 gi|228666234|gb|EEL21698.1| Chromosome partition protein smc [Bacillus cereus Rock1-3]
          Length = 1189

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDVIFAGSETRRAVNVAEVTLTLNNEDQRLPIEYNEVSVTRRVSRSG 108


>gi|49481921|gb|AAT66672.1| DNA repair and genetic recombination protein [Geobacillus
           subterraneus]
          Length = 573

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 87/271 (32%), Gaps = 39/271 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----XAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGL------ADISIKLETR--------DDRSVRCLQINDVVI-- 110
            G+         +   E        A++ I                     +IN  ++  
Sbjct: 57  FGAEKAEIEGLFLLDDERHPCCQKCAEVGIDASEGMVVLRRDILANGKSVCRINGKLVTT 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+   L           +           LD    A        +  +  +     
Sbjct: 117 AVLREIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGAEA---AEALARYRAVYEQHE 171

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
            L  +        S  E QMA         R++++       +E    E     +L    
Sbjct: 172 ALAKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDERLMEEK 218

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                F + + A+++ Y     +GR +DS+ 
Sbjct: 219 VRIVNFQKIYEAIQKSYGALAGEGRGLDSIR 249


>gi|20807751|ref|NP_622922.1| ATPase involved in DNA repair [Thermoanaerobacter tengcongensis
           MB4]
 gi|254478679|ref|ZP_05092050.1| DNA repair protein RecN [Carboxydibrachium pacificum DSM 12653]
 gi|20516305|gb|AAM24526.1| ATPases involved in DNA repair [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035366|gb|EEB76069.1| DNA repair protein RecN [Carboxydibrachium pacificum DSM 12653]
          Length = 566

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 95/281 (33%), Gaps = 37/281 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I        L + F     +  G+ G GK+ +++++  L   R     +  D+ R
Sbjct: 2   LLNLSIQNVAIIDKLEVEFKEGFNVLTGETGAGKSIVIDSVLLLIGAR-----ANKDIIR 56

Query: 67  IGSPSFFSTFARV--------------EGMEGLADISIKLETRDDRSVRCL-QINDVVI- 110
            G          +               G+    D ++ +     +S R   ++N  ++ 
Sbjct: 57  SGEERALVEGVFLVDSNKDKIAELLEEAGVSQEEDDTLIISREITKSGRSYSRVNGKIVP 116

Query: 111 --------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
                    ++ ++       +L+ S   +F         F D    A+  R ++ + ++
Sbjct: 117 LSFLDKIGALLVDILGQHEHQFLLDSSQHLFILD-----NFGDEEFKALKERFKQLLEEY 171

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQKENF 221
             +++ +  L  +          +  Q+ E+    ++    + +    +++M Y  ++ F
Sbjct: 172 RSVVKEKTSLFKDEREKEQMIDLLRYQIQEIESANLSEEEEQQLIERRNILMNY--EKLF 229

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
             +  S     +G    S      +  K L     +D   +
Sbjct: 230 NAVNSSYKILYEGNGGFSVLDNLHKVVKNLETAFSIDGKLK 270


>gi|303235228|ref|ZP_07321846.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|302493542|gb|EFL53330.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
          Length = 518

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 64/362 (17%), Positives = 113/362 (31%), Gaps = 71/362 (19%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  F+ +    +  + +  I VGDN VGK+++LEAI  +S G      +   V  
Sbjct: 5   IEKIRLINFKRFKDYTICPNGRLNILVGDNEVGKSSVLEAIELVSSG------NVRRVEN 58

Query: 67  IGSPSFFST-----FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           IG     +      F +    E L ++ I+L  +          N+     +  ++  +R
Sbjct: 59  IGLDKLMNVESILCFNKNRKYENLPEMIIELFLKGKFDHTMNGRNN----SLGVISDGIR 114

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR---------RRMIDFERLMRGRNRL 172
           +        R       E   FL          +               +++ ++    L
Sbjct: 115 LVCSPNDDYR------NEINEFLKEETLVFPFEYYKIRFSTFSDETYSGYKKKLK--TVL 166

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           +     DS +                       N +  +   Y ++     I+       
Sbjct: 167 INSSNVDSEY--------------------ATNNFIEKMYQRYTEENELERIEHR----- 201

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR---SDLIVDYCDKAITIAHGST 289
             KF Q      EE  K L      D   +  L   +    S+ ++ Y D       G T
Sbjct: 202 -SKFRQMKFKFCEENLKLLNSRVPSDKKYKFALQNNYSKIFSNELMIYEDSIALNNRG-T 259

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVTDIG-SQIFM 347
           GEQ        L          G    ++L +E   HL       L   + +    QIF+
Sbjct: 260 GEQ-------VLIKTDFALEKAGENIDVILFEEPENHLSHTNLKKLISNIENKQTGQIFV 312

Query: 348 TG 349
           T 
Sbjct: 313 TT 314


>gi|42783292|ref|NP_980539.1| DNA repair protein RecN [Bacillus cereus ATCC 10987]
 gi|42739220|gb|AAS43147.1| DNA repair protein RecN [Bacillus cereus ATCC 10987]
          Length = 583

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 111/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 116 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++ +    +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 213 DEENDLTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|327183817|gb|AEA32264.1| chromosome segregation protein SMC [Lactobacillus amylovorus GRL
           1118]
          Length = 1189

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + F+   T  VG NG GK+NI EAI ++   S  +  R  +
Sbjct: 1   MPLTELVLDGFKSFAEKTTIHFNDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGTN 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS              F   +         + +  R  RS      IN+  +R
Sbjct: 61  MKDVIFAGSQYRKPLNKAEVTLVFDNKDRELAFDADQVSITRRILRSGDSEFLINNQQVR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141
           + D     L  S + P+   I S             +RR
Sbjct: 121 MRDVRALFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158


>gi|167932978|ref|ZP_02520065.1| FolD bifunctional protein [candidate division TM7 single-cell
           isolate TM7b]
          Length = 338

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
             G    RR F+D  +  I+P +   +  +ER ++ RN LL +     S  + 
Sbjct: 1   LHGSPSRRRNFIDTFIMHINPHYGTIIRKYERALKQRNTLLKQENASRSKLTI 53


>gi|150399459|ref|YP_001323226.1| chromosome segregation protein SMC [Methanococcus vannielii SB]
 gi|150012162|gb|ABR54614.1| chromosome segregation protein SMC [Methanococcus vannielii SB]
          Length = 1189

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63
           +  +++  F+++ + +L      T  +G NG GK+N ++ I F+   +  +  R   +  
Sbjct: 4   LSEIHMKNFKSFKNAKLKIQNGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +          TFA V       D  + +++      R ++IN 
Sbjct: 64  LITYHGGKR-ETFAEVTLYFNNKDRRMPVDSDKVGISRKVKING 106


>gi|125973444|ref|YP_001037354.1| condensin subunit Smc [Clostridium thermocellum ATCC 27405]
 gi|125713669|gb|ABN52161.1| condensin subunit Smc [Clostridium thermocellum ATCC 27405]
          Length = 1190

 Score = 60.3 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A  ++L F++  T  VG NG GK+NI +AI   L     +  R   
Sbjct: 1   MHLKRLEIQGFKSFADRIQLEFNSGITAVVGPNGSGKSNISDAIRWVLGEQSAKTLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       F       +  +G+  I    + +  R  RS      IN    R
Sbjct: 61  MEDVIFAGTEHRKPMGFAEVSLTFDNSDGVLPIDFSEVTVTRRVYRSGESEYMINKTPCR 120

Query: 112 VVDEL 116
           + D  
Sbjct: 121 LKDIY 125


>gi|324994822|gb|EGC26735.1| cell division protein Smc [Streptococcus sanguinis SK678]
          Length = 1178

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQVETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            K+  A  ++ N    L   Y +++       +L      K  +    L ++ A  L   
Sbjct: 239 EKLIKAEEDLTNIQQELAAYYGKRDELEVENQTLK----AKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 38.0 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|303229440|ref|ZP_07316230.1| conserved hypothetical protein [Veillonella atypica
          ACS-134-V-Col7a]
 gi|302515976|gb|EFL57928.1| conserved hypothetical protein [Veillonella atypica
          ACS-134-V-Col7a]
          Length = 564

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + ++++ I  +RN   + L F      FVG+N VGK+N L+ +  +   RGF+ + +ADV
Sbjct: 1  MFMEWIKIENYRNLVDVELHFHNDINYFVGENAVGKSNFLDLLEQMMNARGFQESDFADV 60

Query: 65 ---TRIGSPSFFS 74
              RI     FS
Sbjct: 61 HRPIRIECKMSFS 73


>gi|228992576|ref|ZP_04152503.1| Chromosome partition protein smc [Bacillus pseudomycoides DSM
           12442]
 gi|228767210|gb|EEM15846.1| Chromosome partition protein smc [Bacillus pseudomycoides DSM
           12442]
          Length = 1189

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIVGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVSVTRRVSRLGDSDFFINKQSCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|325957094|ref|YP_004292506.1| chromosome segregation protein SMC [Lactobacillus acidophilus 30SC]
 gi|325333659|gb|ADZ07567.1| chromosome segregation protein SMC [Lactobacillus acidophilus 30SC]
          Length = 1189

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + F+   T  VG NG GK+NI EAI ++   S  +  R  +
Sbjct: 1   MPLTELVLDGFKSFAEKTTIHFNDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGTN 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS              F   +         + +  R  RS      IN+  +R
Sbjct: 61  MKDVIFAGSQYRKPLNKAEVTLVFDNKDRELAFDADQVSITRRILRSGDSEFLINNQQVR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141
           + D     L  S + P+   I S             +RR
Sbjct: 121 MRDVRALFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158


>gi|294792205|ref|ZP_06757353.1| hypothetical protein HMPREF0874_00653 [Veillonella sp. 6_1_27]
 gi|294457435|gb|EFG25797.1| hypothetical protein HMPREF0874_00653 [Veillonella sp. 6_1_27]
          Length = 564

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          + IK+++I  +RN A + L F      FVG+N VGK+N L+ +  +    GF
Sbjct: 10 MYIKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIIMECHGF 61


>gi|49481919|gb|AAT66671.1| DNA repair and genetic recombination protein [Geobacillus
           subterraneus]
          Length = 573

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 87/271 (32%), Gaps = 39/271 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGL------ADISIKLETR--------DDRSVRCLQINDVVI-- 110
            G+         +   E        A++ I                     +IN  ++  
Sbjct: 57  FGAEKAEIEGLFLLDDERHPCCQKCAEVGIDASEGMVVLRRDILANGKSVCRINGKLVTT 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+   L           +           LD    A        +  +  +     
Sbjct: 117 AVLREIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGAEA---AEALARYRAVYEQHE 171

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
            L  +        S  E QMA         R++++       +E    E     +L    
Sbjct: 172 ALAKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDERLMEEK 218

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                F + + A+++ Y     +GR +DS+ 
Sbjct: 219 VRIVNFQKIYEAIQKSYGALAGEGRGLDSIR 249


>gi|268562094|ref|XP_002646601.1| C. briggsae CBR-HIM-1 protein [Caenorhabditis briggsae]
          Length = 1270

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 7/145 (4%)

Query: 1   MTNRIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           +  +  +  L I  F++Y    +    ++ T  +G NG GK+N+++AISF+   R    R
Sbjct: 6   LPGKGHLHTLEIENFKSYKGKHIIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPTSLR 65

Query: 58  RASYADVTRIGSP--SFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVD 114
              Y D+   G+P         RV      AD +IK   R  +       ++  ++    
Sbjct: 66  VKKYTDLI-HGAPINRPVGKKCRVTMNYKYADGTIKAFARGVNNGTSENYLDGQLVTKEA 124

Query: 115 ELNKHLRISWLVPSMDRIFSGLSME 139
              +   I   + + + +    ++E
Sbjct: 125 YAAEMESIQIFIKARNFLVYQGAIE 149


>gi|332664566|ref|YP_004447354.1| SMC domain-containing protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333380|gb|AEE50481.1| SMC domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 398

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 51/373 (13%), Positives = 126/373 (33%), Gaps = 48/373 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-VT 65
           +K + I  F++ A+  +    +  +F+G+NG GK+NILEA+ F S G   R     + + 
Sbjct: 15  LKEITIKNFKSIANDTIELG-RVNVFIGENGCGKSNILEAVGFASAGVENRV--DNENLI 71

Query: 66  RIG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL-NKHLRI 122
             G          +  +G +     +I++  +D +++           + +E   + +  
Sbjct: 72  SKGVRVAKPSLIISNFKGRKQAKQFNIEILVKDKKNLDLNFTGRDKTFLFEEWEVEEIDN 131

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           +       ++      + +  ++ +   +   HR  ++ +  ++   N     G+   S 
Sbjct: 132 NISTVEEPQVEYEKPSKVKSAIENLRQRMKNPHRGNLMKY--VIYSLNTPALRGFTFESR 189

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
                               E ++ L +   E    E  P +K S +  +    D    A
Sbjct: 190 KDP------------IGIYGEGLDILLASFDE----EEMPKLK-SYSYLIPWLEDFFIDA 232

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                 K     R   ++       P   + +    +    + H       +  + + ++
Sbjct: 233 KDVLKFKGYKPNRSASALYFVDKHMPKLDN-VFSLENANEGVLHI------LFYLAVTIS 285

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSL 358
           H               +D I + L+      L   +  +      Q+ +T  + ++ D L
Sbjct: 286 HY--------TPKFFAIDNIESCLNPHLCRHLMEEICKLAKSQDKQLLITTHNPAILDGL 337

Query: 359 ---NETAKFMRIS 368
              ++  +   ++
Sbjct: 338 NLFDDEIRLFEVT 350


>gi|225848653|ref|YP_002728816.1| ATP/GTP-binding protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643843|gb|ACN98893.1| ATP/GTP-binding protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 484

 Score = 59.9 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 63/359 (17%), Positives = 124/359 (34%), Gaps = 64/359 (17%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K++ +NI  FR Y     +  +   T+FVG N  GK++ILEA+        F     A+
Sbjct: 1   MKLRKINIENFRCYKDETEVEIED-LTVFVGANDSGKSSILEALDI------FFNEGRAE 53

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR----VVDELNKH 119
             R       +  AR+EG   +  I+   E   ++ +R L+ N++ I      + +    
Sbjct: 54  -IRFTEDD-INIHARMEGKHDVK-ITCVFEDIPEQFLRRLEENNIPINDSSITISKTFGK 110

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
              ++L               ++ +   +    P +    +D       R          
Sbjct: 111 NNKTFLNGEELS---------KKLIG-EIKDYLPIYGLFKVD-------RTNTDDNPEIK 153

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                ++E  + E   +I     E+   +   I E V       +K         K + +
Sbjct: 154 DPLMFAVEKSLKE--QEIKYKLQEVAEKIKKAI-EDVANGTLDKLK---------KLNGN 201

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                  Y   + + +  D   R   IG +            +    GS G ++++L+  
Sbjct: 202 IATELNVYIPDIEELKWRDVFKR---IGIYSDK-------GILLNKRGS-GVRRLILLSF 250

Query: 300 FL--AHARLISNTTGF---APILLLDEISAHLDEDKRNALFRIVTDIGS----QIFMTG 349
           FL  A  +     T     + I  ++E    L  D++      + ++ S    Q+ +T 
Sbjct: 251 FLFEAERKRYERHTDEIEISTIYAIEEPETSLHPDQQKQFINSLIELSSNEKVQVLLTT 309


>gi|300811714|ref|ZP_07092188.1| chromosome segregation protein SMC [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497290|gb|EFK32338.1| chromosome segregation protein SMC [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 1186

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 98/290 (33%), Gaps = 36/290 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + F    T  VG NG GK+NI EAI ++      +  R  +
Sbjct: 1   MPLTSLILEGFKSFADKTVIDFTKGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGRN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSV-RCLQINDVVIR 111
             DV   GS      +        +  +   D S   + +  R  +S      IN   +R
Sbjct: 61  MKDVIFAGSQFRKPLNRAEVTMVFDNRDRELDFSADQVSITRRILKSGDNEYLINQQPVR 120

Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDR--MVFAIDPRHR----- 156
           + D     L       S+        D+I +  + ERR   +    V     + +     
Sbjct: 121 LRDVRALFLDSGISQNSLAIISQGRVDQILNSQARERRGIFEEAAGVLHFKQQKQQAQGQ 180

Query: 157 -----RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
                  +I    L+    + L   +  SS     + Q A L   +       I  L   
Sbjct: 181 LETTNDNLIRINDLVNELEKRLEPLHEQSSLAQEYQFQKAALDEDLKTLLAFEIADLDQE 240

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             E  QK       LS    LD +  QS   L  +  +   + +K D + 
Sbjct: 241 EREVSQKLAKSQELLS---RLDAEVKQSQAKLAAKRQEFQLESQKRDQVQ 287


>gi|229104802|ref|ZP_04235463.1| DNA repair protein recN [Bacillus cereus Rock3-28]
 gi|228678675|gb|EEL32891.1| DNA repair protein recN [Bacillus cereus Rock3-28]
          Length = 583

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 213 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|194336900|ref|YP_002018694.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309377|gb|ACF44077.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 422

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 60/367 (16%), Positives = 118/367 (32%), Gaps = 50/367 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ + +  FR    L L FDA  T+    NG GKT +++A++ L      R    +  
Sbjct: 1   MKIRTVTLKNFRGIEELCLPFDAGLTVIAAVNGGGKTTVVDALAMLLSWLTARTKRDSGK 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R          A+   +         L  ++      L +++  +  + ++ +H R   
Sbjct: 61  GRYIKDVEIKNGAKFSLLSVQTSSGEWLIAKNRIGTHALSMSNFTV--LQDIVRHFRHQL 118

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                  +F+   ++R                  + D +  +  R R  T   FD    S
Sbjct: 119 ERDHSLPVFTCYPVDR-----------------AVKDTD--LPQRIR--TRHEFDP--IS 155

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
             +  ++                      E   +E+  +  L   G L+      F   +
Sbjct: 156 VYDNLLSSGAN---------FRLFFEWFRE---REDIENENLRAKGILNNVDPMEFLDPQ 203

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI----- 299
            +  +   +    +    R    P R  ++V   D+ + I   S GE     + +     
Sbjct: 204 LQAVRSALEKFLPEYHDFRIKRQPLR--MVVTKGDQELRIDSLSVGE--TCFIALIGDIA 259

Query: 300 -FLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVF 355
             LA A            ++L+DEI  HL    +      +T +    Q  +T     + 
Sbjct: 260 RRLAIANPRKQNPLDGEGVILIDEIDLHLHPAWQRRAVTNLTKVFPNVQFVVTTHSPQIL 319

Query: 356 DSLNETA 362
             +   +
Sbjct: 320 SEVAPES 326


>gi|257791119|ref|YP_003181725.1| chromosome segregation protein SMC [Eggerthella lenta DSM 2243]
 gi|257475016|gb|ACV55336.1| chromosome segregation protein SMC [Eggerthella lenta DSM 2243]
          Length = 1186

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 87/252 (34%), Gaps = 43/252 (17%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++A    L  +      VG NG GK+NI +A+   L     +  R  +
Sbjct: 1   MYLKSLVLKGFKSFADRSVLALEPGIIAVVGPNGSGKSNISDAVLWVLGERNAKHLRGQA 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   GS +  S   A V+ +   +D ++ ++  +    R +         IN VV R
Sbjct: 61  MEDVIFAGSSARKSVGIAEVDLVLDNSDGTLPVDFDEVAVTRRMYRSGESEYLINGVVAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            +D         L           S+D I      +RR  ++                  
Sbjct: 121 RMDVLDILHDSGLGTGTHSIISQGSLDSILQSKPEDRRALIEEAAG-------------- 166

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENF 221
            +++ + R            ++++A +A +   +       +  L          Q    
Sbjct: 167 -VLKHKQRKAKSERK----LAAMDAHLARV-KDVAAEVERQLGPLERKAKRARTYQGLAD 220

Query: 222 PHIKLSLTGFLD 233
               LSL+  +D
Sbjct: 221 ELADLSLSLAVD 232


>gi|116490532|ref|YP_810076.1| condensin subunit Smc [Oenococcus oeni PSU-1]
 gi|116091257|gb|ABJ56411.1| condensin subunit Smc [Oenococcus oeni PSU-1]
          Length = 1184

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 24/223 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +K+K L I+ F+++A    + F    T  VG NG GK+NI+EAI ++      +G R  +
Sbjct: 1   MKLKSLEINGFKSFADKTVIDFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKGLRGNT 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
            ADV   GS         S    ++  +         +++  R  R+      IN V  R
Sbjct: 61  MADVIFGGSKKRPALGRASVSMTIDNSDHYLHSAFDEVQISRRLYRNGDAEYLINGVKSR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+  + +RR  ++ +      +  +     +
Sbjct: 121 LKDITDLFVDTGLGRESFSIINQGKVEAIFNAKAEDRRAIIEDVAGVFKYKQNKNKSQNQ 180

Query: 164 RLMRGRN--RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204
            L    N  RLL      S     +E Q A+   +    R + 
Sbjct: 181 LLQTQENLDRLLDIIKEISDRLQPLEKQ-ADEAEEFLSLRKQF 222


>gi|319649603|ref|ZP_08003759.1| smc protein [Bacillus sp. 2_A_57_CT2]
 gi|317398765|gb|EFV79447.1| smc protein [Bacillus sp. 2_A_57_CT2]
          Length = 1188

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L++  F+++   + + F    T  VG NG GK+NI +AI ++      +  R A 
Sbjct: 1   MFLKRLDVIGFKSFAERITVDFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS S     FA V       D  + +E  +    R +  + 
Sbjct: 61  MEDVIFAGSDSRRAQNFAEVTLTLDNGDQGLPIEYSEVSVTRRVYRSG 108


>gi|290889933|ref|ZP_06553020.1| hypothetical protein AWRIB429_0410 [Oenococcus oeni AWRIB429]
 gi|290480543|gb|EFD89180.1| hypothetical protein AWRIB429_0410 [Oenococcus oeni AWRIB429]
          Length = 1184

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 86/223 (38%), Gaps = 24/223 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +K+K L I+ F+++A    + F    T  VG NG GK+NI+EAI ++      +G R  +
Sbjct: 1   MKLKSLEINGFKSFADKTVIDFMPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAKGLRGNT 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
            ADV   GS         S    ++  +         +++  R  R+      IN V  R
Sbjct: 61  MADVIFGGSKKRPALGRASVSMTIDNSDHYLHSAFDEVQISRRLYRNGDAEYLINGVKSR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+  + +RR  ++ +      +  +     +
Sbjct: 121 LKDITDLFVDTGLGRESFSIINQGKVEAIFNAKAEDRRAIIEDVAGVFKYKQNKNKSQNQ 180

Query: 164 RLMRGRN--RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204
            L    N  RLL      S     +E Q A+   +    R + 
Sbjct: 181 LLQTQENLDRLLDIIKEISDRLQPLEKQ-ADEAEEFLSLRKQF 222


>gi|152976214|ref|YP_001375731.1| chromosome segregation protein SMC [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024966|gb|ABS22736.1| chromosome segregation protein SMC [Bacillus cytotoxicus NVH
           391-98]
          Length = 1189

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVAVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   GS +      A V       D  + +E  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSGDSDFFINKQPCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|170079221|ref|YP_001735859.1| RecF/RecN/SMC domain-containing protein [Synechococcus sp. PCC
           7002]
 gi|169886890|gb|ACB00604.1| RecF/RecN/SMC N terminal domain protein [Synechococcus sp. PCC
           7002]
          Length = 1007

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 94/272 (34%), Gaps = 26/272 (9%)

Query: 9   FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            L +  F +Y    L F   HT    G NG GK+++LEA++++  G+  R +S  DV  +
Sbjct: 5   KLTLKNFLSYRDAVLDFTGFHTACICGPNGAGKSSLLEAVTWVIWGKS-RTSSADDVIHM 63

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIRVVDELNKH 119
           G       F  +   +    I ++   R       ++        I    IR   EL   
Sbjct: 64  GEMDVRVDFELLCHQQVYRIIRMRSRGRGATLQFQVRSPTGDFTAITGKGIRETQELIDQ 123

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
                        F   +  R+   D  + A     ++ + D  +L   R   L +   D
Sbjct: 124 EIKL-----DYDTFINSAYLRQGHADEFMVAKPADRKKILSDLLKL--DRYESLAQLAKD 176

Query: 180 SSW-----CSSIEAQMAELGVKINIA--RVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
            +         +E  +A    ++         + A+   I E  Q+EN   ++  L    
Sbjct: 177 KARSFKLKADLLEESLAPQTEQLRAKPQLEAELAAIEQTISEGKQREN--QLQDQLQKIQ 234

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
                + F   + + +++ +  R  D     T
Sbjct: 235 AIAQQRQFLKNQVDTSQQQYQRRHQDLTRLST 266


>gi|84616899|emb|CAJ13793.1| conserved hypothetical protein [Desulfococcus multivorans]
          Length = 627

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 64/383 (16%), Positives = 124/383 (32%), Gaps = 68/383 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++  L I +++N     L FD      +FVG NG GK+N+ EA+  +     FR     
Sbjct: 1   MRLTSLYIGQYKNLRDFSLSFDGGSFIDVFVGKNGTGKSNLFEALIEI-----FRHIVEF 55

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D  +      +     ++G       +    T   +  + +    +   V+   + H   
Sbjct: 56  DREKAARDFNYRIGFEIDGKATEIGWNSGKLTIGGKERKTIGKTPLPDNVLIYYSGHNDT 115

Query: 123 SW-LVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRM-------------IDF----- 162
              LV   +  F    ++R  F +   F  I P ++  +               F     
Sbjct: 116 VAKLVEQYEEAFRKR-IKRADFDEARYFIGIGPEYKDLLLAVLLMQPDTCRARQFICQKL 174

Query: 163 --------ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
                    +++  R     +  FD       +      G+         ++ L   I  
Sbjct: 175 GIETVASEAKVVLERPAYAADSRFDIELNDETDRYWKPEGIT-----KTFLDRLHGCINT 229

Query: 215 YV-----QKENFPHIKLSLTGFLDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRRTLIGP 268
                   +  F      +  F      Q F  L  +E  ++  + + +  ++  T+   
Sbjct: 230 ATGSPVRSEGYFADPDRYILYFDIANIRQEFADLSPQELFRQFDNLKTLGMLAEITIP-- 287

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
               L +       TIAH S G+ + V +    +   L  +      I LLDE  + L  
Sbjct: 288 ----LQLT-GGVDATIAHFSDGQFQSVYI---YSIVELFKD---RNCITLLDEPDSFLHP 336

Query: 329 DKRNALFRIVTDIGSQIF-MTGT 350
           + +    +       Q+F +T T
Sbjct: 337 EWQFDFLK-------QVFEITDT 352


>gi|310828473|ref|YP_003960830.1| chromosome segregation protein SMC [Eubacterium limosum KIST612]
 gi|308740207|gb|ADO37867.1| chromosome segregation protein SMC [Eubacterium limosum KIST612]
          Length = 1192

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 97/278 (34%), Gaps = 37/278 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A  + L F    +  VG NG GK+NI +AI   L     +  R   
Sbjct: 1   MYLKKLALAGFKSFAEPVELEFSKGVSAIVGPNGSGKSNITDAIRWVLGEQSTKSLRGKK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++      ++   G        I +  R  RS     ++N    +
Sbjct: 61  MEDVIFSGTEKKKPLNYAEVTLTLDNTSGFTLDNLDEIVITRRLFRSGESEYRMNQKSCK 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K+         ++ I      E R  ++  V  ++  ++ +  + E
Sbjct: 121 LKDIHELFMDTGLGKNGYSLISQGGIENIIGASPQELRGIVEEAVGIVN--YKTKKQEAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +      L            IE Q+  L  + +    E +            +E    
Sbjct: 179 KKLENTQNNLERL---KDILEEIEKQLKPLKAQ-SEKAKEYLEL----------REALKK 224

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           + L +         +   A +++ A+  F   +++  +
Sbjct: 225 VDLMVFYHNMKDASEQLAAYEKQLAEVRFQIFEIEKKT 262


>gi|74208366|dbj|BAE26376.1| unnamed protein product [Mus musculus]
          Length = 1233

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 97/280 (34%), Gaps = 34/280 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G     +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFVAHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM +++
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYEYK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E        + +E ++     K+   R   +      +M  ++  +  +
Sbjct: 178 KIAAQKTIEKKEAKL-KEIKTILEEEITPTIQKLKEERSSYLE--YQKVMREIEHLSRLY 234

Query: 224 IKLSLTGFLDGKFDQSFCALKE------EYAKKLFDGRKM 257
           I        D K ++S   LKE         + L +  K 
Sbjct: 235 IAYQFLRAEDTK-ERSAGELKEMQDKIVNLQEVLSENEKK 273


>gi|49481923|gb|AAT66673.1| DNA repair and genetic recombination protein [Geobacillus
           subterraneus]
          Length = 573

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 87/271 (32%), Gaps = 39/271 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGL------ADISIKLETR--------DDRSVRCLQINDVVI-- 110
            G+         +   E        A++ I                     +IN  ++  
Sbjct: 57  FGAEKAEIEGLFLLDDERHPCCQKCAEVGIDASEGMVVLRRDILANGKSVCRINGKLVTT 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+   L           +           LD    A        +  +  +     
Sbjct: 117 AVLREIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGAEA---AEALARYRAVYEQHE 171

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
            L  +        S  E QMA         R++++       +E    E     +L    
Sbjct: 172 ALAKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDERLMEEK 218

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                F + + A+++ Y     +GR +DS+ 
Sbjct: 219 VRIVNFQKIYEAIQKSYGALAGEGRGLDSIR 249


>gi|310658887|ref|YP_003936608.1| chromosome condensation and segregation smc ATPase [Clostridium
           sticklandii DSM 519]
 gi|308825665|emb|CBH21703.1| chromosome condensation and segregation SMC ATPase [Clostridium
           sticklandii]
          Length = 1177

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++     ++F       VG NG GK+NIL+AI   L     +  R   
Sbjct: 1   MYLKKMEIKGFKSFPDKTEILFPHGLISVVGPNGSGKSNILDAIRWVLGEQSMKSLRGDK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVR-CLQINDVVIR 111
             DV   G+      ++      ++  + + DI    I ++ +  +S      +N+   R
Sbjct: 61  LEDVIFSGTEKRKEMNYCEVSMLIDNQDKMIDIDYSEISIKRKAFKSGESQFFLNNKQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           + D         + +          +D I +G S +RR+ L+        R+
Sbjct: 121 LKDIKELLLDTGIGREGYSIISQGKIDEIVNGNSNQRRKILEEAAGITKFRY 172


>gi|300214419|gb|ADJ78835.1| Chromosome partition protein [Lactobacillus salivarius CECT 5713]
          Length = 861

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +KIK L ++ F+++A+  +  F    T  VG NG GK+NI EA+ ++   +     R + 
Sbjct: 1   MKIKSLTLNGFKSFANKTIINFQDGLTGIVGPNGSGKSNITEALRWVLGEQSVKNLRGSK 60

Query: 61  YADVTRIGSPSFFST-FARV-------EGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS +  +   A V       +G        I++  R  RS      IN+  +R
Sbjct: 61  MPDIIFAGSDTRAALNRAEVTLVLDNEDGYLYNQPNEIRITRRIFRSGDSEFFINEKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    +RR  ++
Sbjct: 121 LKDVVDLFIDTGLGRESFSIISQGRVESIFNSKPQDRRILIE 162


>gi|229075882|ref|ZP_04208858.1| DNA repair protein recN [Bacillus cereus Rock4-18]
 gi|228707197|gb|EEL59394.1| DNA repair protein recN [Bacillus cereus Rock4-18]
          Length = 583

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQTVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 213 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|308807783|ref|XP_003081202.1| putative chromosome associated protein (ISS) [Ostreococcus tauri]
 gi|116059664|emb|CAL55371.1| putative chromosome associated protein (ISS) [Ostreococcus tauri]
          Length = 1562

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 2/105 (1%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYA 62
           ++IK + +  F+ Y    +  FD      VG NG GK+N+  AI   LS   G  RA   
Sbjct: 367 MRIKQVVVEGFKTYREQTVVDFDDGLNCIVGANGSGKSNLFHAIRFVLSDVFGTLRAEDR 426

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                         A VE +   AD  + +E  + R  R + +  
Sbjct: 427 QRLLHEGAGHAVMSAYVEIVFDNADGRLPVEREEVRLRRNIGLKK 471



 Score = 41.0 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 100/310 (32%), Gaps = 50/310 (16%)

Query: 62   ADVTRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            A+  R    S  +  A +E + G    +++ +  R+      +    ++    ++  K +
Sbjct: 1228 AEKMRTAQASVEAASAEIEQLRGSQVSMNMSMSEREKEIETLITKTSMLANKREQYQKKI 1287

Query: 121  RISWLVPSM--DRIFSGLSMERRRFLDRMVFAID---PRHRRRMIDFERLMRGRNRLLTE 175
            R    +P+   DR  S      R+ L +    ++     +++ +  +++    R+ L   
Sbjct: 1288 RELGSLPADAFDRYRSESVSALRKLLGKTNTQLEKLGHVNKKALDQYQQFTEQRSELEKR 1347

Query: 176  GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
                +    SI  Q+ +    ++  + E I               F  + ++        
Sbjct: 1348 RAEINKAHESIT-QLIDH---LDRKKDEAIER------------TFKQVSVNFRDVFHKL 1391

Query: 236  FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD---YCDKAITIAHG----- 287
                   L     +K    R  D        G   +DL      Y    I ++ G     
Sbjct: 1392 VPGGRGELV--MQRKRVANRDPDEE-----GGARAADLTSFSEKYSGVKIKVSFGQGETM 1444

Query: 288  -----STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI- 341
                 S G++ VV V +  A            P  L DEI A LD   R A+  ++    
Sbjct: 1445 QMKQLSGGQKTVVAVALIFA-----IQRCDPMPFYLFDEIDAALDPQYRTAVAHMIKSQA 1499

Query: 342  --GSQIFMTG 349
               +Q   T 
Sbjct: 1500 VGKTQFICTT 1509


>gi|55670515|pdb|1W1W|A Chain A, Sc Smc1hd:scc1-C Complex, Atpgs
 gi|55670516|pdb|1W1W|B Chain B, Sc Smc1hd:scc1-C Complex, Atpgs
 gi|55670517|pdb|1W1W|C Chain C, Sc Smc1hd:scc1-C Complex, Atpgs
 gi|55670518|pdb|1W1W|D Chain D, Sc Smc1hd:scc1-C Complex, Atpgs
          Length = 430

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 65/405 (16%), Positives = 136/405 (33%), Gaps = 58/405 (14%)

Query: 6   KIKFLNISEFRNYASLR-LVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           ++  L +S F++Y  +  + F ++  T  +G NG GK+N+++AISF+   R    R    
Sbjct: 3   RLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNIL 62

Query: 62  ADVT--------------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQIN 106
            D+                 G+ S     A V+      +  ++L     R+     +I+
Sbjct: 63  KDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKID 122

Query: 107 DVVIRVVDE---------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
              +   D          L K          +++I +   +E  R  + +  +I  +   
Sbjct: 123 GKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEY 182

Query: 158 RMIDFERLMRGRNR--LLTEGYFDSSWCSSIEAQMAEL------GVKINIA--RVEMINA 207
             +  +     ++    +           + ++   E+      G + + A  R E+IN 
Sbjct: 183 EELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINN 242

Query: 208 LSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSRRT 264
            +  +    +K    F  IK       +  FD     L   Y +   +    ++      
Sbjct: 243 ETEQLKAEEKKILNQFLKIKKKRKELFEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNA 302

Query: 265 LIGPHRSDLIVDYCDKAITI---------AHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
            +     D   +   K              + S GE+ V  + +  A      N+   +P
Sbjct: 303 SLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALALLFA-----INSYQPSP 357

Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357
             +LDE+ A LD      +   +    +   Q  +     ++F+ 
Sbjct: 358 FFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK 402


>gi|51244240|ref|YP_064124.1| hypothetical protein DP0388 [Desulfotalea psychrophila LSv54]
 gi|50875277|emb|CAG35117.1| hypothetical protein DP0388 [Desulfotalea psychrophila LSv54]
          Length = 450

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KIK L +  +R + +  + FD Q T+ V  NG GK+ IL+A+
Sbjct: 15 MKIKRLTLHNYRRFTNFEIDFDEQLTVLVAKNGEGKSTILDAV 57


>gi|327490289|gb|EGF22077.1| cell division protein Smc [Streptococcus sanguinis SK1058]
          Length = 1178

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            K+  +  E +  +   +  Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 EKLTQS-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 36.8 bits (84), Expect = 5.9,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFQSTFGAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|327438874|dbj|BAK15239.1| predicted ATP-dependent endonuclease of the OLD family
          [Solibacillus silvestris StLB046]
          Length = 537

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +K L I  ++ +    L FD   +I +G+NG GK+ +LEAI     G
Sbjct: 1  MLLKKLKIYNYKKFEDFSLDFDNNFSIMIGNNGAGKSTLLEAIHLALTG 49


>gi|222525285|ref|YP_002569756.1| SMC domain-containing protein [Chloroflexus sp. Y-400-fl]
 gi|222449164|gb|ACM53430.1| SMC domain protein [Chloroflexus sp. Y-400-fl]
          Length = 373

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 62/394 (15%), Positives = 123/394 (31%), Gaps = 77/394 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-D 63
           ++++ + +  F++   L         I +G NG GK+NIL      +  R          
Sbjct: 1   MQLQTIKVQGFKSIRELEFSLRP-LNILIGANGSGKSNIL---GVFAFLRAMVERHLQMY 56

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           V R G       F +          S+++E    +  R  + N         +  +    
Sbjct: 57  VARAGGADRILHFGQKNTD------SLQIELWFTKKNRRARGN---------IIANGYRC 101

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            LVP++               DR VFA +         +E+ +      L     + S  
Sbjct: 102 ALVPAVG--------------DRFVFAEERAFFHD-RRYEKPVE----TLLGSGHEESLL 142

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF----DQS 239
                  A  G  I     ++  A+ S I+ Y   +     ++  TG +D  +    D S
Sbjct: 143 P------ASYGRGIPA---DVFEAMQSWIV-YHFHDTSDSARVKQTGDIDDNYWLRQDAS 192

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI--------------- 284
                  Y ++       + +    ++ P   D ++                        
Sbjct: 193 NLTAYLYYIQQQAPDHYRNIVDVIRMVAPFFDDFVLRPSPFNPNKIKLEWRERGSDTYFD 252

Query: 285 AHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDI 341
           A+  S G  + + +   L     +     F  I+LLDE    L     + L  ++     
Sbjct: 253 AYALSDGTLRFICLATLL-----LQPARKFPAIILLDEPEMGLHPYAIHVLAELLHSAAT 307

Query: 342 GSQIFMTGTDKSVFDSL-NETAKFMRISNHQALC 374
            +Q+ +     ++ +    E    +   + Q +C
Sbjct: 308 QTQVIVATQSVTLVNQFEPEDIVVVERQDGQPVC 341


>gi|49478569|ref|YP_038235.1| DNA repair protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49330125|gb|AAT60771.1| DNA repair protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 579

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 61/282 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 2   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 57  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   V+ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 112 KLVTLSVLKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQNVY 167

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
            D+E+L +     L          S  E QMA         R+++I      I +   K 
Sbjct: 168 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKI 208

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +     L+        F++ + AL + Y     DG+ +D++ 
Sbjct: 209 D-EENNLTEERLQIANFEKIYKALGDAYRSLSADGQGLDNVR 249


>gi|52141633|ref|YP_085189.1| chromosome segregation SMC protein [Bacillus cereus E33L]
 gi|51975102|gb|AAU16652.1| chromosome segregation SMC protein [Bacillus cereus E33L]
          Length = 1189

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|327463121|gb|EGF09442.1| cell division protein Smc [Streptococcus sanguinis SK1]
 gi|327474732|gb|EGF20137.1| cell division protein Smc [Streptococcus sanguinis SK408]
          Length = 1178

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            K+  +  E +  +   +  Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 EKLTQS-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|294671384|ref|ZP_06736234.1| hypothetical protein NEIELOOT_03092 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291306932|gb|EFE48175.1| hypothetical protein NEIELOOT_03092 [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 548

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA----QHTIFVG-DNGVGKTNILEAISFL 50
          + IK + +  F++YA     F      ++ I VG +NG GKT +LEAI   
Sbjct: 1  MYIKRIKLKNFKSYAEAEFEFPPPEKGRNLILVGAENGHGKTTLLEAIYLC 51


>gi|126665992|ref|ZP_01736972.1| ATPase [Marinobacter sp. ELB17]
 gi|126629314|gb|EAZ99931.1| ATPase [Marinobacter sp. ELB17]
          Length = 426

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 58/358 (16%), Positives = 111/358 (31%), Gaps = 40/358 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  FR    L L    +  +FVG NG GK++IL+A + L           A+ 
Sbjct: 1   MHINNLTLQRFRGAQDLSLDLSEKLNVFVGMNGAGKSSILDASAILLSW-------LANR 53

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +    S     A  +   G +  ++K++  +  S      N   +R          +  
Sbjct: 54  IKHSGASG-RPIAEDDIKNGESSANLKVQLCEQGSY--FGWNLAKVRKGYSKKDLASVLI 110

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                 +   G   E    ++  +FA  P +R  +    R+                  S
Sbjct: 111 SASEAAKRIQGAITENVGDVNIPLFAYYPVNRAVLDIPLRI---------REKHQFELLS 161

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           + E  +                       E   +E+  +        L    D  F   +
Sbjct: 162 AYEESLTSGAN---------FRTFFEWFRE---REDLENEHRKYRDDLIKPDDFQFPDPQ 209

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL----VGIF 300
               ++  +    D         P R  + V    + +T+   S GE+ ++     +   
Sbjct: 210 LAAVRRALEIFMPDFTELTVRRNPLR--MEVLKKGRRLTVNQLSDGEKCLMAMVGDLARR 267

Query: 301 LAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVF 355
           LA A            I+++DEI  HL    +  +   + ++    Q  ++     V 
Sbjct: 268 LAIANPRRADPLQGDGIVMIDEIDLHLHPKWQRLVVPRLMEVFQNCQFLISTHSPHVI 325


>gi|134045227|ref|YP_001096713.1| condensin subunit Smc [Methanococcus maripaludis C5]
 gi|132662852|gb|ABO34498.1| condensin subunit Smc [Methanococcus maripaludis C5]
          Length = 1189

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63
           +  +++  F+++ + +L      T  +G NG GK+N ++ I F+   +  +  R   +  
Sbjct: 4   LSEIHMKNFKSFKNSKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +    +      FA V       D  + +E+      R +++N 
Sbjct: 64  LITYHNGKR-ENFAEVTLFFDNKDRKMPVESDKVGISRKVKLNG 106


>gi|255714819|ref|XP_002553691.1| KLTH0E04774p [Lachancea thermotolerans]
 gi|238935073|emb|CAR23254.1| KLTH0E04774p [Lachancea thermotolerans]
          Length = 1170

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVEELIIDGFKSYATRTVISDWDPQFNAITGLNGSGKSNILDAICFVLGISSMATVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E    IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFTNDDKANSPIGFESYPKISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    L+    +   + + + +    
Sbjct: 120 HRAQQQTVLHLFQSVQLNINNPNFLIMQG 148


>gi|229098646|ref|ZP_04229586.1| DNA repair protein recN [Bacillus cereus Rock3-29]
 gi|228684725|gb|EEL38663.1| DNA repair protein recN [Bacillus cereus Rock3-29]
          Length = 583

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 56/286 (19%), Positives = 110/286 (38%), Gaps = 69/286 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQTVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEY 215
            D+E+L +     L          S  E QMA         R+++I      +    ++ 
Sbjct: 172 ADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKM 212

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 213 DEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|45358960|ref|NP_988517.1| structural maintenance of chromosome protein [Methanococcus
           maripaludis S2]
 gi|45047826|emb|CAF30953.1| structural maintenance of chromosome protein [Methanococcus
           maripaludis S2]
          Length = 1189

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63
           +  +++  F+++ + +L      T  +G NG GK+N ++ I F+   +  +  R   +  
Sbjct: 4   LSEIHMKNFKSFKNSKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +    +      FA V  +    D  + +++      R ++IN 
Sbjct: 64  LITYHNGKR-ENFAEVTLIFDNKDRKMPVDSDKVGISRKVKING 106


>gi|209528038|ref|ZP_03276518.1| DNA repair protein RecN [Arthrospira maxima CS-328]
 gi|209491524|gb|EDZ91899.1| DNA repair protein RecN [Arthrospira maxima CS-328]
          Length = 587

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 62/198 (31%), Gaps = 23/198 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L L F     +F G+ G GK+ IL+A+  +  G+           R
Sbjct: 2   LISLRIENFALIDHLDLEFGPGLNVFTGETGAGKSIILDAVDAVLGGK-----VDRRSIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV-----RCLQINDVVIRVVDELNKHL- 120
            G        A  E   GL D   + E            R L +N    R    LN  L 
Sbjct: 57  TGCDRSI-LEACFEVDPGLIDWFRQQEIDLVDGSLVVCCRELVVNQDKFRSRSRLNGILV 115

Query: 121 ----------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGR 169
                     R   +      +  G    +R +LD    +   R R R+ + + R    +
Sbjct: 116 GRGIIDRLRDRFVEITAQGQTVQLGKPALQREWLDLYGGSNTLRLRERVGEAYMRAREVQ 175

Query: 170 NRLLTEGYFDSSWCSSIE 187
           N L             I+
Sbjct: 176 NALQKRRQDSQQRLQRID 193


>gi|313893078|ref|ZP_07826655.1| conserved hypothetical protein [Veillonella sp. oral taxon 158
          str. F0412]
 gi|313442431|gb|EFR60846.1| conserved hypothetical protein [Veillonella sp. oral taxon 158
          str. F0412]
          Length = 557

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + IK+++I  +RN A + L F      FVG+N VGK+N L+ +  +    GF    + DV
Sbjct: 1  MYIKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIVMECHGFNEHDFTDV 60

Query: 65 ---TRIGSP 70
              RI   
Sbjct: 61 HKPIRIDFE 69


>gi|312984415|ref|ZP_07791750.1| cell division protein Smc [Lactobacillus crispatus CTV-05]
 gi|310894190|gb|EFQ43277.1| cell division protein Smc [Lactobacillus crispatus CTV-05]
          Length = 1189

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + FD   T  VG NG GK+NI EA+ ++   S  +  R  +
Sbjct: 1   MPLTELVLDGFKSFADKTTIHFDDGITGIVGPNGSGKSNITEAVRWVMGESSAKSLRGTN 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS              F   E         + +  R  RS      IN+  +R
Sbjct: 61  MKDVIFAGSQFRKPLNKAEVTLVFDNKERELAFDSDQVSITRRFLRSGDSEFLINNQQVR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141
           + D     L  S + P+   I S             +RR
Sbjct: 121 MRDVRTLFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158


>gi|228947567|ref|ZP_04109857.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812087|gb|EEM58418.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 1189

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|295693171|ref|YP_003601781.1| chromosome segregation protein smc [Lactobacillus crispatus ST1]
 gi|295031277|emb|CBL50756.1| Chromosome segregation protein Smc [Lactobacillus crispatus ST1]
          Length = 1189

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + FD   T  VG NG GK+NI EA+ ++   S  +  R  +
Sbjct: 1   MPLTELVLDGFKSFADKTTIHFDDGITGIVGPNGSGKSNITEAVRWVMGESSAKSLRGTN 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS              F   E         + +  R  RS      IN+  +R
Sbjct: 61  MKDVIFAGSQFRKPLNKAEVTLVFDNKERELAFDSDQVSITRRFLRSGDSEFLINNQQVR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141
           + D     L  S + P+   I S             +RR
Sbjct: 121 MRDVRTLFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158


>gi|256269118|gb|EEU04453.1| Smc6p [Saccharomyces cerevisiae JAY291]
          Length = 1114

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK + +  F  +    L   ++    VG+NG GK+ IL AI+     +     R +S  D
Sbjct: 82  IKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITIGLGAKASETNRGSSLKD 141

Query: 64  VTRIGS 69
           + R G 
Sbjct: 142 LIREGC 147


>gi|229019044|ref|ZP_04175884.1| Chromosome partition protein smc [Bacillus cereus AH1273]
 gi|229025289|ref|ZP_04181709.1| Chromosome partition protein smc [Bacillus cereus AH1272]
 gi|228736042|gb|EEL86617.1| Chromosome partition protein smc [Bacillus cereus AH1272]
 gi|228742246|gb|EEL92406.1| Chromosome partition protein smc [Bacillus cereus AH1273]
          Length = 1189

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNIAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|192293342|ref|YP_001993947.1| chromosome segregation protein SMC [Rhodopseudomonas palustris
           TIE-1]
 gi|192287091|gb|ACF03472.1| chromosome segregation protein SMC [Rhodopseudomonas palustris
           TIE-1]
          Length = 1154

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K+  L +  F+++      + +   T  VG NG GK+N++EA+ +       +     D
Sbjct: 1   MKLTRLRLHGFKSFVEPTDFMIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRATD 60

Query: 64  VT--------RIGSPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
           +            + +       ++  +  A        ++ +  R +R +    +IN  
Sbjct: 61  MDAVIFAGSGNRPARNHAEVVMSIDNSDRTAPAALNDADTLDISRRIEREAGSVYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 121 EVRARDVQLLFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166



 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  +++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1042 GKKPQSLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCDL 1096

Query: 338  VTDIGSQI---FMTGTDKSV 354
            +TD+       F+T T   +
Sbjct: 1097 LTDMAKTTETRFITITHNPI 1116


>gi|328956989|ref|YP_004374375.1| factor for double strand breaks DNA repair and genetic
           recombination [Carnobacterium sp. 17-4]
 gi|328673313|gb|AEB29359.1| factor for double strand breaks DNA repair and genetic
           recombination [Carnobacterium sp. 17-4]
          Length = 572

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 65/183 (35%), Gaps = 32/183 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F     L L F+   T+  G+ G GK+ I++A+  L+ GRG      ++  R
Sbjct: 2   LQELTIKDFAIIQDLNLSFNRGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SSEFIR 56

Query: 67  IGS-----PSFFSTFAR-----------VEGMEGLADISIKLETRDDRSVRCLQIND--V 108
            G+      + FS               ++  E    I   +           +IN   V
Sbjct: 57  HGATKCVLEALFSLEGNSTTYKLLKDYDIDSEEDSVIIQRDIHRSGKN---VCRINGRLV 113

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERR----RFLDRMVFAIDPRHRRRMIDFER 164
            I  +  + + +           + +            F D+ +  +   ++    D+++
Sbjct: 114 TIATLRLIGESIIDIHGQNEHQELMN--PERHLSMLDHFGDQELVRLKKNYQETYADYKK 171

Query: 165 LMR 167
           + +
Sbjct: 172 VKK 174


>gi|229092890|ref|ZP_04224024.1| Chromosome partition protein smc [Bacillus cereus Rock3-42]
 gi|228690512|gb|EEL44295.1| Chromosome partition protein smc [Bacillus cereus Rock3-42]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|229162784|ref|ZP_04290741.1| Chromosome partition protein smc [Bacillus cereus R309803]
 gi|228620666|gb|EEK77535.1| Chromosome partition protein smc [Bacillus cereus R309803]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|196042324|ref|ZP_03109600.1| chromosome segregation SMC protein [Bacillus cereus NVH0597-99]
 gi|196026846|gb|EDX65477.1| chromosome segregation SMC protein [Bacillus cereus NVH0597-99]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|329936093|ref|ZP_08285892.1| ATP-dependent OLD family endonuclease [Streptomyces
           griseoaurantiacus M045]
 gi|329304411|gb|EGG48290.1| ATP-dependent OLD family endonuclease [Streptomyces
           griseoaurantiacus M045]
          Length = 650

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 98/344 (28%), Gaps = 52/344 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRASY 61
           + ++ L I  FR+   + + F +  T+ VG+N  GK+N++EA+   +     R  R    
Sbjct: 1   MYLRQLGIKNFRSCYDIEVEFRSGITLLVGENNSGKSNVIEALRLATTPLNRRSTRWFDE 60

Query: 62  ADVT--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +D++  R G  + F            A     L+   + +           R        
Sbjct: 61  SDLSHGREGQEAQFRATYDGLSAAQRAHYIAALDVETNEAAYTTTYKRDESRQQ-----M 115

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR--NRLLTEGY 177
                  P                 D     I   +   + D +R +     NRLL    
Sbjct: 116 RPTVTAGPVD------GPDAEPDKRD----QIAHVYLAPLRDAQRELDSSDGNRLLRIIR 165

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
               + +  + Q             E     +    +  +          + G L    D
Sbjct: 166 ----YLTEEDEQ------------EEFRAQANDSFTKLKEHPVLTATTKEIQGHLGELTD 209

Query: 238 QSFCALKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
                  E  +A+            +    G   +DL       A  +          V+
Sbjct: 210 SVRGQTVEVTFAEYELHRLARSLRVKMAEAGIPPADLTESGLGYANLLFIA------TVI 263

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
           + +  A    +        + L++E  AHL    +  L   + +
Sbjct: 264 LELRNAQHMEL-------TLFLVEEPEAHLHPQLQAVLLDYLQE 300


>gi|305663543|ref|YP_003859831.1| SMC domain protein [Ignisphaera aggregans DSM 17230]
 gi|304378112|gb|ADM27951.1| SMC domain protein [Ignisphaera aggregans DSM 17230]
          Length = 765

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 105/301 (34%), Gaps = 41/301 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP-----GRG 55
           M++ + ++ + +    ++ +  +VF       VG NG GK++I+++I +        GR 
Sbjct: 1   MSSTVIVRRVRLRNILSHENTDIVFPMGLIALVGPNGAGKSSIVDSIVYAMFVSPKSGRS 60

Query: 56  FRRASYADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV- 113
           FR      + RIG S         V G        I +   +   +  +  N     +  
Sbjct: 61  FRGEGKKGILRIGTSEGSIELELSVSGKIYRIQRIISVSRPETAKISEVDENGNERVIAV 120

Query: 114 --DELNKHLRISWLVPSMD--------------RIFSGLSMERRRFLDRMVFAIDPRHRR 157
             D +   +R    +PS D              R+       R+  + R++   +    +
Sbjct: 121 GVDNVLDVIRSILGIPSSDAIRLTVVSRQNELSRLIEEQPSRRKELILRLLGLEELEKAK 180

Query: 158 RMIDFERLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
            +      ++                    + I  +++ L  +++  R   ++ L+  I 
Sbjct: 181 DL------LKQALDGAERARIRFDEIRRMINDITNELSRLEKEVSEKRER-LDRLNLEIN 233

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
              ++ ++      L    D    ++  A+ +E  +      +      RT++G  R ++
Sbjct: 234 SLRERLSYLEKLRDLGYRYDKL--KNIVAIYKEIKE-----LEKYEDYCRTILGIKRDEV 286

Query: 274 I 274
           I
Sbjct: 287 I 287



 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 46/225 (20%), Positives = 82/225 (36%), Gaps = 13/225 (5%)

Query: 154 RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
           R+     ++ ++    NR ++E      +  S EA+  EL  KI     E +  L  L+ 
Sbjct: 539 RYSEIENEYRKISDELNRKISESERIRGFIESSEARKKELNEKIKNLDEE-LKELEKLVK 597

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
            Y   +   +  L   G L          L E Y  ++     MD     ++      ++
Sbjct: 598 IYPSLDILVNRILGKDGLLAKLLTNEARMLIERYTNRILHELGMD----FSITIDEDFNI 653

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            V      I +   S GEQ  + + + +A A  +          +LDE +  LD ++R  
Sbjct: 654 SVKTMFGDIDVRGLSGGEQVALSIALRIALAYTVFGRL--PGFFILDEPTQFLDSERRRT 711

Query: 334 LFRIVTDIGS---QIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           +F I+  +     Q+ +   D  V D  +   K   IS      +
Sbjct: 712 IFEIIKRLSERLPQVLVVTHDVEVVDMAD---KVYYISKEGGRSV 753


>gi|229086401|ref|ZP_04218577.1| Chromosome partition protein smc [Bacillus cereus Rock3-44]
 gi|228696917|gb|EEL49726.1| Chromosome partition protein smc [Bacillus cereus Rock3-44]
          Length = 1190

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRKAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|222097293|ref|YP_002531350.1| chromosome segregation smc protein [Bacillus cereus Q1]
 gi|221241351|gb|ACM14061.1| chromosome segregation SMC protein [Bacillus cereus Q1]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|301055338|ref|YP_003793549.1| chromosome segregation SMC protein [Bacillus anthracis CI]
 gi|300377507|gb|ADK06411.1| chromosome segregation SMC protein [Bacillus cereus biovar
           anthracis str. CI]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|218904978|ref|YP_002452812.1| chromosome segregation SMC protein [Bacillus cereus AH820]
 gi|218536104|gb|ACK88502.1| chromosome segregation SMC protein [Bacillus cereus AH820]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|312965417|ref|ZP_07779649.1| putative exonuclease [Escherichia coli 2362-75]
 gi|312289837|gb|EFR17725.1| putative exonuclease [Escherichia coli 2362-75]
 gi|323159374|gb|EFZ45359.1| ATP-dependent exoDNAse [Escherichia coli E128010]
          Length = 653

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 5  IKIKFLNISEFRN--YASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61
          +KI+ + +  FR   +  + L F+ + TI VG NG GKT +L+A+S         R    
Sbjct: 1  MKIEKIKLQNFRCFGHEVVELNFEEELTILVGGNGSGKTAVLQAVSRLFGTTSAQRSVQR 60

Query: 62 AD----VTRIGSPSFFSTFAR 78
           D    + R    S  S F  
Sbjct: 61 RDFHIPIDRQELQSGDSLFVE 81


>gi|262282632|ref|ZP_06060400.1| chromosome segregation protein SMC [Streptococcus sp. 2_1_36FAA]
 gi|262261923|gb|EEY80621.1| chromosome segregation protein SMC [Streptococcus sp. 2_1_36FAA]
          Length = 1177

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 130/365 (35%), Gaps = 43/365 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDKFIKNAAKEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIE--AQMAELGVKINIARVE-MINALSSLIMEYV 216
             +      L       Y        +E  AQ A+  ++++  R E  ++ L + +    
Sbjct: 179 SKLAQTQDNLDRLEDIIYELDGQIKPLEKQAQTAKRFLELDQERRELYLDVLVAQMTANK 238

Query: 217 QK-----ENFPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
           +K     EN   I+  L+ +   + + +      +    +L      D      L     
Sbjct: 239 EKLNQAEENLAKIQEELSAYYSKRDELELENQTLKSKRHELNQTLAADQAKLLELTRLIS 298

Query: 271 S-DLIVDYCDKAITIAHGSTGEQ--KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
             +  +D      + A  S  E   ++ ++   L               L+    S  LD
Sbjct: 299 DLERQIDLSKLESSQAATSRKENEARMAVLAEKLEQTEKDCQAKSENLSLI----SEKLD 354

Query: 328 EDKRN 332
           ++++ 
Sbjct: 355 KNQQE 359



 Score = 37.2 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   M+ + + G   +DLI+   D      
Sbjct: 1006 LSAKDLLLTTIEEMNDEVKERFKSTFEAIRESFKMTFKQMFGGGSADLILTEGDLLTAGV 1065

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1066 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1120

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1121 VKRFGDYLNRFDKESQFIV 1139


>gi|262280097|ref|ZP_06057882.1| chromosome segregation ATPase [Acinetobacter calcoaceticus RUH2202]
 gi|262260448|gb|EEY79181.1| chromosome segregation ATPase [Acinetobacter calcoaceticus RUH2202]
          Length = 1149

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGSYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   RIF   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192
             + +   +     R+ D    ++ + + L      +    ++E+Q+           A+
Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAD 238

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             V++       +N L         + +     L  T  L  +  Q    L++E+ + 
Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLEATSALFQRLIQQSSPLQQEWQQA 296


>gi|190405425|gb|EDV08692.1| hypothetical protein SCRG_04323 [Saccharomyces cerevisiae RM11-1a]
          Length = 1114

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK + +  F  +    L   ++    VG+NG GK+ IL AI+     +     R +S  D
Sbjct: 82  IKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITIGLGAKASETNRGSSLKD 141

Query: 64  VTRIGS 69
           + R G 
Sbjct: 142 LIREGC 147


>gi|167636668|ref|ZP_02394958.1| chromosome segregation SMC protein [Bacillus anthracis str. A0442]
 gi|170689651|ref|ZP_02880832.1| chromosome segregation SMC protein [Bacillus anthracis str. A0465]
 gi|196035877|ref|ZP_03103279.1| chromosome segregation SMC protein [Bacillus cereus W]
 gi|228916485|ref|ZP_04080051.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928896|ref|ZP_04091928.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229123362|ref|ZP_04252566.1| Chromosome partition protein smc [Bacillus cereus 95/8201]
 gi|254683444|ref|ZP_05147304.1| chromosome segregation SMC protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721379|ref|ZP_05183168.1| chromosome segregation SMC protein [Bacillus anthracis str. A1055]
 gi|254739519|ref|ZP_05197216.1| chromosome segregation SMC protein [Bacillus anthracis str. Kruger
           B]
 gi|167527919|gb|EDR90735.1| chromosome segregation SMC protein [Bacillus anthracis str. A0442]
 gi|170666396|gb|EDT17178.1| chromosome segregation SMC protein [Bacillus anthracis str. A0465]
 gi|195991526|gb|EDX55492.1| chromosome segregation SMC protein [Bacillus cereus W]
 gi|228660138|gb|EEL15774.1| Chromosome partition protein smc [Bacillus cereus 95/8201]
 gi|228830703|gb|EEM76308.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843064|gb|EEM88146.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|118479070|ref|YP_896221.1| condensin subunit Smc [Bacillus thuringiensis str. Al Hakam]
 gi|225865829|ref|YP_002751207.1| chromosome segregation SMC protein [Bacillus cereus 03BB102]
 gi|229186088|ref|ZP_04313257.1| Chromosome partition protein smc [Bacillus cereus BGSC 6E1]
 gi|118418295|gb|ABK86714.1| condensin subunit Smc [Bacillus thuringiensis str. Al Hakam]
 gi|225789332|gb|ACO29549.1| chromosome segregation SMC protein [Bacillus cereus 03BB102]
 gi|228597264|gb|EEK54915.1| Chromosome partition protein smc [Bacillus cereus BGSC 6E1]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|115526051|ref|YP_782962.1| ATP-dependent OLD family endonuclease [Rhodopseudomonas palustris
          BisA53]
 gi|115519998|gb|ABJ07982.1| ATP-dependent endonuclease of the OLD family-like protein
          [Rhodopseudomonas palustris BisA53]
          Length = 582

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASY 61
          + I  L +  FR+ A + + F  + T+ VG+N  GK+NI++A+  L+     RR      
Sbjct: 1  MHIDCLRLQRFRSCADVTVRFHRELTVLVGENNGGKSNIVDALRLLTLPLSGRRDRYPED 60

Query: 62 ADVTRIGSPSFFSTFARVEGM 82
           D+ R  + + ++   R  G+
Sbjct: 61 DDLRRGSTETHYALEGRFAGL 81


>gi|49478913|ref|YP_037909.1| chromosome segregation SMC protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330469|gb|AAT61115.1| chromosome segregation SMC protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|42782940|ref|NP_980187.1| chromosome segregation SMC protein [Bacillus cereus ATCC 10987]
 gi|217961268|ref|YP_002339836.1| chromosome segregation SMC protein [Bacillus cereus AH187]
 gi|229140492|ref|ZP_04269047.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST26]
 gi|229197959|ref|ZP_04324673.1| Chromosome partition protein smc [Bacillus cereus m1293]
 gi|42738867|gb|AAS42795.1| chromosome segregation SMC protein [Bacillus cereus ATCC 10987]
 gi|217063100|gb|ACJ77350.1| chromosome segregation SMC protein [Bacillus cereus AH187]
 gi|228585438|gb|EEK43542.1| Chromosome partition protein smc [Bacillus cereus m1293]
 gi|228643053|gb|EEK99329.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST26]
 gi|324327745|gb|ADY23005.1| chromosome segregation SMC protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|328951061|ref|YP_004368396.1| DNA repair protein RecN [Marinithermus hydrothermalis DSM 14884]
 gi|328451385|gb|AEB12286.1| DNA repair protein RecN [Marinithermus hydrothermalis DSM 14884]
          Length = 527

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 60/188 (31%), Gaps = 15/188 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +       +  L F    T+  G+ G GK+ +++A+S L   R     +   + R
Sbjct: 2   LERLEVKNLAVLEAATLEFGPGLTVLTGETGAGKSILVDALSLLLGVR-----ADPGLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+     T A  +G             R   +    +I+  V+ + +          + 
Sbjct: 57  PGAEHLLVT-AWFDGR--------PFSRRVGPARSVPRIDGEVVTLRELAEATAARLAIH 107

Query: 127 PSMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
                +        R  LD  V       +R+    +  L+    RL             
Sbjct: 108 AQHAALTLATPRSHRALLDATVPSPTRAAYRKAYATYRALLEEEARLHEAARERERRLDV 167

Query: 186 IEAQMAEL 193
           +  Q+ E+
Sbjct: 168 LRFQLEEI 175


>gi|301162347|emb|CBW21892.1| putative ATP-dependent endonuclease protein [Bacteroides fragilis
          638R]
          Length = 572

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          ++IK +++  +RN  S  + FD      VG+N +GK+NIL  ++ +   RGF
Sbjct: 1  MRIKDISVENYRNLNSATITFDESCNFIVGENNLGKSNILNLLNIIFTRRGF 52


>gi|295109854|emb|CBL23807.1| condensin subunit Smc [Ruminococcus obeum A2-162]
          Length = 1186

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 97/268 (36%), Gaps = 36/268 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++A  +   F    T  VG NG GK+N+ +A+ ++      +  R  +
Sbjct: 1   MYLKNIEVYGFKSFAQKINFEFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGGN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      SF S    ++  +    +     T   R  R       IN    R
Sbjct: 61  MQDVIFSGTENRKPLSFASVSITLDNSDHKLPVDYNEVTVARRLYRSGESEYLINGSGCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + RR++   +
Sbjct: 121 LKDIQEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFK-RRKITTLK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSLIMEYVQK 218
           +L   R  L+      +   S +  Q+  L       +I +A+ + +  L   +     +
Sbjct: 180 KLDEERQNLVRV----TDILSELTKQLGPLERQSETARIYLAKRDELKELDINLFLLDHQ 235

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEE 246
                    L   L+ K  Q+   L E 
Sbjct: 236 RTGE-----LLNELETKLSQAQQELDEA 258



 Score = 36.0 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 73/220 (33%), Gaps = 31/220 (14%)

Query: 150  AIDPRHRRRMIDF----ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
              + +      ++       ++ R   LT+          I+ ++ +LG     A  +  
Sbjct: 937  QRESQISYMWEEYEITPNNALQYRKEELTDRQTIKKDVLRIKDEIRKLGSVNVNAIEDYK 996

Query: 206  NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSR-- 262
            N L        Q E+    + +L G +     +    +++++ +K  D  R+ D   +  
Sbjct: 997  NLLERHTFLSAQYEDIVKAEETLEGII----QELDEGMRKQFTEKFRDIQREFDKAFKEL 1052

Query: 263  -----RTLIGPHRSDLI---VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISN 309
                  TL      D++   +    +            S GE+ +  + +  A       
Sbjct: 1053 FGGGKGTLELAEDEDILEAGIRIISQPPGKKLQNMMQLSGGEKALTAIALLFA-----IQ 1107

Query: 310  TTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
                +P  LLDEI A LD+         +  +   +Q  +
Sbjct: 1108 NLKPSPFCLLDEIEAALDDSNVGRFASYLQKLTKNTQFII 1147


>gi|228935162|ref|ZP_04097989.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824527|gb|EEM70332.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|227890257|ref|ZP_04008062.1| chromosome segregation protein Smc [Lactobacillus johnsonii ATCC
           33200]
 gi|227849071|gb|EEJ59157.1| chromosome segregation protein Smc [Lactobacillus johnsonii ATCC
           33200]
          Length = 1186

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 85/267 (31%), Gaps = 48/267 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + ++ L ++ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R  +
Sbjct: 1   MPLQQLVLNGFKSFADKTTIRFNNGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGEN 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116
             DV   GS        A VE +    D  +  +  +    R +  N     +++     
Sbjct: 61  MKDVIFAGSQMRAPMNHAEVELVFDNRDHQLASDNDEVVVTRKILRNGESDYLLNHHPVR 120

Query: 117 NKHLRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            K +R  ++   M             D I +    +RR      +F             E
Sbjct: 121 LKDVRTLFIESGMSSDSLGIISQGKVDEILNSKPQQRR-----GIFEEAAGVLHFKQQKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             ++                    A +  +         +++  L   I    ++ +   
Sbjct: 176 IALKQ--------------LDKTNANLIRI--------NDLVKELEGRIEPLHEQSSLAK 213

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKK 250
                   LD K  Q      E   ++
Sbjct: 214 EYKFQKEQLDHKLKQLLGLEIESLNEE 240


>gi|30263851|ref|NP_846228.1| chromosome segregation SMC protein [Bacillus anthracis str. Ames]
 gi|47529276|ref|YP_020625.1| chromosome segregation SMC protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186698|ref|YP_029950.1| chromosome segregation SMC protein [Bacillus anthracis str. Sterne]
 gi|65321176|ref|ZP_00394135.1| COG1196: Chromosome segregation ATPases [Bacillus anthracis str.
           A2012]
 gi|165873293|ref|ZP_02217901.1| chromosome segregation SMC protein [Bacillus anthracis str. A0488]
 gi|167642019|ref|ZP_02400250.1| chromosome segregation SMC protein [Bacillus anthracis str. A0193]
 gi|170709349|ref|ZP_02899764.1| chromosome segregation SMC protein [Bacillus anthracis str. A0389]
 gi|177655963|ref|ZP_02937115.1| chromosome segregation SMC protein [Bacillus anthracis str. A0174]
 gi|190565740|ref|ZP_03018659.1| chromosome segregation SMC protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227813244|ref|YP_002813253.1| chromosome segregation SMC protein [Bacillus anthracis str. CDC
           684]
 gi|229602083|ref|YP_002868085.1| chromosome segregation SMC protein [Bacillus anthracis str. A0248]
 gi|254735886|ref|ZP_05193592.1| chromosome segregation SMC protein [Bacillus anthracis str. Western
           North America USA6153]
 gi|254751173|ref|ZP_05203212.1| chromosome segregation SMC protein [Bacillus anthracis str. Vollum]
 gi|254756721|ref|ZP_05208750.1| chromosome segregation SMC protein [Bacillus anthracis str.
           Australia 94]
 gi|30258495|gb|AAP27714.1| chromosome segregation SMC protein [Bacillus anthracis str. Ames]
 gi|47504424|gb|AAT33100.1| chromosome segregation SMC protein [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49180625|gb|AAT56001.1| chromosome segregation SMC protein [Bacillus anthracis str. Sterne]
 gi|164710978|gb|EDR16547.1| chromosome segregation SMC protein [Bacillus anthracis str. A0488]
 gi|167510018|gb|EDR85433.1| chromosome segregation SMC protein [Bacillus anthracis str. A0193]
 gi|170125744|gb|EDS94656.1| chromosome segregation SMC protein [Bacillus anthracis str. A0389]
 gi|172079907|gb|EDT65014.1| chromosome segregation SMC protein [Bacillus anthracis str. A0174]
 gi|190562659|gb|EDV16625.1| chromosome segregation SMC protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227003537|gb|ACP13280.1| chromosome segregation SMC protein [Bacillus anthracis str. CDC
           684]
 gi|229266491|gb|ACQ48128.1| chromosome segregation SMC protein [Bacillus anthracis str. A0248]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|291459098|ref|ZP_06598488.1| putative RecF/RecN/SMC N domain protein [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291418352|gb|EFE92071.1| putative RecF/RecN/SMC N domain protein [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 1094

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 55/287 (19%), Positives = 103/287 (35%), Gaps = 36/287 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60
           + +K + I  F+++A+   L F    T  VG NG GK+NI +A+ ++      +  R AS
Sbjct: 1   MYLKSIEIQGFKSFANKTELDFSRGVTGIVGPNGSGKSNISDAVRWVLGEQKIKQLRGAS 60

Query: 61  YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G       ++A V      AD ++ L+  +    R +         +N    R
Sbjct: 61  MQDVIFSGTQKRKPQSYAYVSITLDNADHALNLDYDELTVTRRIYRSGESEYLLNGTDCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG + ERR   D  V  +  + R+ + + +
Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGRAEERRALFDEAVGIVKYKRRKDVAERK 180

Query: 164 ----RLMRGR-----NRL------LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
               +L   R     N L      L +    +    S+  Q+      + +  ++  +  
Sbjct: 181 LGEEQLNLQRVTDILNELGRQMEPLRKQSEQAKQYLSLRDQLILYEANLFLREMDAASKE 240

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
            +   E  +        +        K  +     + E  + L  GR
Sbjct: 241 LADSSENEENVQAELASVRAESEELAKKYKEIEEKQRELEEMLAKGR 287


>gi|228986991|ref|ZP_04147117.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228772769|gb|EEM21209.1| Chromosome partition protein smc [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|325696124|gb|EGD38015.1| cell division protein Smc [Streptococcus sanguinis SK160]
          Length = 1178

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            K+  +  E +  +   +  Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 EKLTQS-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLAALSEKLAQIE 336



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|151940904|gb|EDN59286.1| structural maintenance of chromosomes [Saccharomyces cerevisiae
           YJM789]
          Length = 1114

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK + +  F  +    L   ++    VG+NG GK+ IL AI+     +     R +S  D
Sbjct: 82  IKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITIGLGAKASETNRGSSLKD 141

Query: 64  VTRIGS 69
           + R G 
Sbjct: 142 LIREGC 147


>gi|153810623|ref|ZP_01963291.1| hypothetical protein RUMOBE_01007 [Ruminococcus obeum ATCC 29174]
 gi|149833019|gb|EDM88101.1| hypothetical protein RUMOBE_01007 [Ruminococcus obeum ATCC 29174]
          Length = 1186

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 26/224 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++A  +   F    T  VG NG GK+N+ +A+ ++      +  R  +
Sbjct: 1   MYLKNIEVYGFKSFAQKINFEFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGGN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      SF S    ++  +    +    + +  R  RS      IN    R
Sbjct: 61  MQDVIFSGTENRKPLSFASVSITLDNSDHKLPVDYNEVTVTRRLYRSGESEYLINGSGCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + RR+    +
Sbjct: 121 LKDIQEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFK-RRKATTLK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           +L   R  L+      +   S +  Q+  L  +   AR+ +   
Sbjct: 180 KLDEERQNLVRV----TDILSELTKQLGPLEKQSETARIYLAKR 219


>gi|91975674|ref|YP_568333.1| chromosome segregation protein SMC [Rhodopseudomonas palustris
           BisB5]
 gi|91682130|gb|ABE38432.1| condensin subunit Smc [Rhodopseudomonas palustris BisB5]
          Length = 1154

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K+  L +  F+++      + +   T  VG NG GK+N++EA+ +       +    AD
Sbjct: 1   MKLTRLRLHGFKSFVEPTDFMIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRAAD 60

Query: 64  VT--------RIGSPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
           +            S +       ++  +  A  +      +++  R +R +    +IN  
Sbjct: 61  MDAVIFAGSGNRPSRNHAEVVMSIDNSDRTAPAAMNDSEILEISRRIEREAGSQYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 121 EVRARDVQLLFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166



 Score = 40.3 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  +++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1042 GKKPQSLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCDL 1096

Query: 338  VTDIGSQIFMTGTDKSVF 355
            + +      MT T ++ F
Sbjct: 1097 LNE------MTATTETRF 1108


>gi|325690807|gb|EGD32808.1| cell division protein Smc [Streptococcus sanguinis SK115]
          Length = 1178

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 67/352 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRG-----------------------------RNRLLTEGYFDSSWCSSIEAQMAELG 194
             +                               +  L  +G     +   + AQ+    
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQAETAKRFLSLDGQRRELYLDVLVAQLTANK 238

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            K+  A  E +  +   +  Y  K +   ++      L  K  +    L ++ A  L   
Sbjct: 239 EKLTQA-EEDLRNIQQELAAYYSKRDELEVE---NQTLKAKRHELNQTLSDDQASLLELT 294

Query: 255 RKM-DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           R + D   +  L     S       +           E+++  +   LA   
Sbjct: 295 RLISDLERQIDLSKLESSQAATSRREN----------EERLATLSEKLAQIE 336



 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|229157424|ref|ZP_04285502.1| Chromosome partition protein smc [Bacillus cereus ATCC 4342]
 gi|228626151|gb|EEK82900.1| Chromosome partition protein smc [Bacillus cereus ATCC 4342]
          Length = 1189

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|158335965|ref|YP_001517139.1| RecF/RecN/SMC domain-containing protein [Acaryochloris marina
           MBIC11017]
 gi|158306206|gb|ABW27823.1| RecF/RecN/SMC N-terminal domain protein, putative [Acaryochloris
           marina MBIC11017]
          Length = 913

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 94/270 (34%), Gaps = 48/270 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  + +  F+ +      F        G+NG GKT+ILEAI+++           A++
Sbjct: 1   MEVLSVTLKNFKAHRDRYYEFRPGANAICGENGSGKTSILEAIAWVLFDHSE--YKRAEL 58

Query: 65  TRIGSPSFFSTFARVEGMEGLA----------------DISIKLETRDDRSVRCLQINDV 108
             +G+ S  +  + +  ++G                   ++ KLE +    VRC     +
Sbjct: 59  ISVGAKSAQAMVSFISHLDGRIYEVRRCTSRGYEVHDPQLNRKLELKKLDDVRCWLCEHL 118

Query: 109 VIRVVDELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMV------------------ 148
            + V  EL K    +  +P       F   + +R++  D ++                  
Sbjct: 119 GVGVHTELAKLFAETIGIPQGTFTVDFLKSAGDRKKVFDPILKVEEYKQAYDQAQKLTSY 178

Query: 149 --------FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI--N 198
                         + +++  +E L + +  L        +   ++  Q+AE+  ++   
Sbjct: 179 AQAQVQQLEQQLQSYDQQLEGWEALKQQKLELANTLTQQQAQMQTLAQQLAEMQTELQYL 238

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSL 228
            A+ + I  L   +     +       L L
Sbjct: 239 KAKDQAIQTLEKQVQHLQTQWTSKQEILQL 268


>gi|6323415|ref|NP_013487.1| Smc6p [Saccharomyces cerevisiae S288c]
 gi|2500793|sp|Q12749|SMC6_YEAST RecName: Full=Structural maintenance of chromosomes protein 6;
           AltName: Full=DNA repair protein RHC18; AltName:
           Full=Rad18 homolog
 gi|609425|gb|AAB67273.1| Ylr383wp [Saccharomyces cerevisiae]
 gi|1150625|emb|CAA56902.1| RHC18 [Saccharomyces cerevisiae]
 gi|285813788|tpg|DAA09684.1| TPA: Smc6p [Saccharomyces cerevisiae S288c]
          Length = 1114

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK + +  F  +    L   ++    VG+NG GK+ IL AI+     +     R +S  D
Sbjct: 82  IKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITIGLGAKASETNRGSSLKD 141

Query: 64  VTRIGS 69
           + R G 
Sbjct: 142 LIREGC 147


>gi|325121131|gb|ADY80654.1| putative chromosome segregation ATPase [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 1149

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGSYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   R+F   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRVFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192
             + +   +     R+ D    ++ + + L      +    ++E+Q+           AE
Sbjct: 180 TLQHLEHTEQN-LSRLDDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             V++       +N L         + +     L  T  L  +  Q    L++E+ + 
Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLEATSALFQRLIQQSSPLQQEWQQA 296


>gi|262369275|ref|ZP_06062603.1| chromosome segregation ATPase [Acinetobacter johnsonii SH046]
 gi|262315343|gb|EEY96382.1| chromosome segregation ATPase [Acinetobacter johnsonii SH046]
          Length = 1150

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 103/293 (35%), Gaps = 50/293 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F    T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLHFKDNRTAVVGPNGCGKSNVIDAIRWVMGESSARQLRGGS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGL------ADISIKLETRDDRSVRC-LQINDV 108
             DV   G+      S  S   R +   G       A   + ++ + +R  +    +N  
Sbjct: 61  MQDVIFTGTAKRKPVSVASVELRFDNTYGKLGGSYNAYTELAVKRQVNRDGKSEYFLNGT 120

Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRFL 144
             R  D                  E     R+    P   R+F   +        RRR  
Sbjct: 121 KCRRRDITDIFLGTGLGPRSYSIIEQGMINRLVDAKPEEMRVFIEEAAGVSRYQARRR-- 178

Query: 145 DRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
              +  +D    + +   E +   +R + + L      +    ++E+Q+  + V++   +
Sbjct: 179 -ETLLHLDHT-TQNLSRLEDIASELRSQLKTLKRQAETAIQYKTLESQIRTIKVEVLSFQ 236

Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            E  + L     EY    N    +  L        +    +  E + + +   
Sbjct: 237 CEQSSRLQ---QEYTLHMNDLGEQFKLVRSELTTLEHDLTSTSELFQRLIQQS 286



 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              +  ++A  S GE+ +  + +  A  RL       +P  +LDE+ A LD+        +
Sbjct: 1040 GKRNSSLALLSGGEKALTALALVFAIFRL-----NPSPFCVLDEVDAPLDDANVGRFCNL 1094

Query: 338  VTDIGSQI 345
            V ++  Q+
Sbjct: 1095 VKELSEQV 1102


>gi|256379444|ref|YP_003103104.1| DNA repair protein RecN [Actinosynnema mirum DSM 43827]
 gi|255923747|gb|ACU39258.1| DNA repair protein RecN [Actinosynnema mirum DSM 43827]
          Length = 592

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 96/277 (34%), Gaps = 31/277 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---- 56
           M   ++I+ L + +        L   A  T+  G+ G GKT ++  +  L  GR      
Sbjct: 1   MLAEMRIQGLGVID-----EATLELAAGFTVVTGETGAGKTMVVTGLHLLGGGRAEASRV 55

Query: 57  RRASYADVT--RIGSPSFFSTFARVEGMEGLAD-----ISIKLETRDDRSVRCLQINDVV 109
           R  +   V   R  +P+        E + G  D     I+++    D RS   L    V 
Sbjct: 56  RNGAERAVVEGRFQAPAGSPAAKVAEEVGGEPDDDGSVIAVRTVGADGRSRAHLGGRSVP 115

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG- 168
           + V+ EL + L          R+    S E+R  LDR            +  ++R+    
Sbjct: 116 VGVLSELAEQLLAVHGQNDQLRLLR--SSEQRAVLDRFAGD---EVAGPLGAYQRVRDEW 170

Query: 169 -RNRLLTEGYFDSSWCSSIEAQMAELG-VKINI------ARVEMINALSSLIMEYVQKEN 220
            R          SS   + EA++   G  +I           E+++    L      +E+
Sbjct: 171 LRVATELRDRTRSSRELAREAELLRHGLAEITAVDPKPGEDAELVDEARRLADADQLRES 230

Query: 221 FPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRK 256
               + ++ G  DG  D      L  E  ++L     
Sbjct: 231 AAGAQYAVAGSPDGDPDNPGALGLIGEARRRLGASED 267


>gi|116514342|ref|YP_813248.1| chromosome segregation ATPase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093657|gb|ABJ58810.1| condensin subunit Smc [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
          Length = 1186

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 98/290 (33%), Gaps = 36/290 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + F    T  VG NG GK+NI EAI ++      +  R  +
Sbjct: 1   MPLTSLILEGFKSFADKTVIDFTKGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGRN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSV-RCLQINDVVIR 111
             DV   GS      +        +  +   D S   + +  R  +S      IN   +R
Sbjct: 61  MKDVIFAGSQFRKPLNRAEVTMVFDNRDRELDFSADQVSITRRILKSGDNEYLINQQPVR 120

Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDR--MVFAIDPRHR----- 156
           + D     L       S+        D+I +  + ERR   +    V     + +     
Sbjct: 121 LRDVRALFLDSGISQNSLAIISQGRVDQILNSQARERRGIFEEAAGVLHFKQQKQQAQRQ 180

Query: 157 -----RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
                  +I    L+    + L   +  SS     + Q A L   +       I  L   
Sbjct: 181 LETTNDNLIRINDLVNELEKRLEPLHEQSSLAQEYQFQKAALDEDLKTLLAFEIADLDQE 240

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             E  QK       LS    LD +  QS   L  +  +   + +K D + 
Sbjct: 241 EREVSQKLAKSQELLS---RLDAEVKQSQAKLAAKRQEFQLESQKRDQVQ 287


>gi|19745654|ref|NP_606790.1| chromosome segregation SMC [Streptococcus pyogenes MGAS8232]
 gi|19747785|gb|AAL97289.1| putative chromosome segregation SMC [Streptococcus pyogenes
           MGAS8232]
          Length = 1179

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A+V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216
             +      L       Y   +  + +E Q  +A+  ++++  R ++ ++ L   I    
Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +++      L+        +     +++E+Y K
Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271


>gi|171185553|ref|YP_001794472.1| hypothetical protein Tneu_1095 [Thermoproteus neutrophilus
          V24Sta]
 gi|170934765|gb|ACB40026.1| conserved hypothetical protein [Thermoproteus neutrophilus
          V24Sta]
          Length = 453

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++ + +  F++   L L       + VG NG GK+N+LEA+ F
Sbjct: 5  VRKVVVRNFKSIGELELELRPGVNLLVGANGAGKSNVLEAVRF 47


>gi|150866808|ref|XP_001386531.2| Structural maintenance of chromosome protein 1 (sister chromatid
           cohesion complex Cohesin, subunit SMC1) [Scheffersomyces
           stipitis CBS 6054]
 gi|149388064|gb|ABN68502.2| Structural maintenance of chromosome protein 1 (sister chromatid
           cohesion complex Cohesin, subunit SMC1) [Scheffersomyces
           stipitis CBS 6054]
          Length = 1240

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 79/216 (36%), Gaps = 29/216 (13%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           ++  L +  F++Y  + ++ F +   T  +G NG GK+N+++AISF+   R    R  + 
Sbjct: 3   RLIGLELHNFKSYRGTTKIGFGSSFFTSIIGPNGAGKSNLMDAISFVLGVRSSHLRSQNL 62

Query: 62  ADVT----RIGSPSFFST--------FARVEGMEGLADISIKLETR--DDRSVRCLQIND 107
            D+     R    S  S          A V  +    D  I    R          ++ND
Sbjct: 63  KDLIYRGRRTNGNSDLSVDELEQDPNRAHVTAIYEKDDGEIVKFKRTISSSGNSEYRVND 122

Query: 108 VVIRVVDE---------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHR 156
           V +  ++          L K          +++I S    +  + ++ +  +      + 
Sbjct: 123 VSVTSLNYSLVLKAENILIKARNFLVFQGDVEQIASQSPTDLTKLIENISGSNEFTKEYE 182

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
               ++ER     N + +     +S     + Q+ E
Sbjct: 183 SLKEEYERAREFSNSVFSRKRNLNSESRQYKEQLIE 218


>gi|110597191|ref|ZP_01385480.1| Chromosome segregation protein SMC [Chlorobium ferrooxidans DSM
           13031]
 gi|110341382|gb|EAT59847.1| Chromosome segregation protein SMC [Chlorobium ferrooxidans DSM
           13031]
          Length = 1178

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 100/278 (35%), Gaps = 47/278 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           + +  + +  F+++A  +R+ FD   T  VG NG GKTN+++A+   L   +    R A 
Sbjct: 1   MYLSKIELFGFKSFAHKVRISFDKGLTAIVGPNGCGKTNVVDAMRWVLGEQKSSLLRSAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             ++   GS      S       VE  + +  I     T   R  R       +N V  R
Sbjct: 61  MENIIFNGSKNLKPLSLTEVSITVENTKNVLPIEYTEVTVTRRLYRSGESEFLLNQVPCR 120

Query: 112 VVDELNKHLRISWLVPSMD--------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D L+          +           I S  S ER +  +             +  ++
Sbjct: 121 LKDILDLFTDTGMGSDAYSVIELKMIEEIISNKSEERLKLFEE---------AAGITRYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-----GVKINIARVEMINALSSLIMEYVQK 218
           +  +   +LL     D    S ++  +AE+      +K+ + + E +  L   I E    
Sbjct: 172 QRRKQTFKLLESASRD---LSRVDDVLAEVEKKVRSLKLQVRKAEKLRELKKEIRE---- 224

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
                + L+L+     +  +    +++   ++     +
Sbjct: 225 -----LDLALSWLSMEELREKLEPMRQRIREEELRNHE 257


>gi|47570281|ref|ZP_00240930.1| reticulocyte binding protein [Bacillus cereus G9241]
 gi|47553045|gb|EAL11447.1| reticulocyte binding protein [Bacillus cereus G9241]
          Length = 1189

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTITLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|190346209|gb|EDK38239.2| hypothetical protein PGUG_02337 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1170

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVEELIIDGFKSYATRTVISDWDPQFNAITGLNGSGKSNILDAICFVLGIASMTTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  + IS+  +     S + L +N 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNSDTSKSPIGFETCSKISVTRQIILGGSSKYL-VNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    LN    +   + + + +    
Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148


>gi|93005180|ref|YP_579617.1| SMC protein-like [Psychrobacter cryohalolentis K5]
 gi|92392858|gb|ABE74133.1| SMC protein-like [Psychrobacter cryohalolentis K5]
          Length = 1318

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 125/362 (34%), Gaps = 59/362 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K L ++ F+++A+     F    T  VG NG GK+N+++AI ++   +  +  R  +
Sbjct: 1   MRLKSLKLAGFKSFANPTTFTFRHGITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60

Query: 61  YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105
            +DV   G       + A VE       +    I  +     + SVR            I
Sbjct: 61  MSDVIFAGTQDKAAKSAASVELTFEHTQDEQTGIRHEFNLYQELSVRRQVNLEGRSDYFI 120

Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
           N    R  D         L            + RI     ++ R F++            
Sbjct: 121 NGTRCRRRDVIDVFLGTGLGARSYAVIEQGMIGRIVESSPLQLREFIEEAAG-------- 172

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI--ARVEMINALSSLIMEY 215
            +  ++       + L +   + +    +++++     +++   A  E    L+  + + 
Sbjct: 173 -VSRYQARREETQKKLEKTKDNLARLHDMQSELVSQQKRLSKQAASAERYEELALTLADI 231

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
            Q+     +  +       K      A +    +  ++  K             + D + 
Sbjct: 232 KQQLAIQQLYQAKHNQQQQKIAHERSATEVATLQADYETLKA------------KQDKLA 279

Query: 276 DYCDKAI---TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
            Y ++       A  S  +Q+   +    A  +L   +   + +  +++  A L++ ++ 
Sbjct: 280 TYINQEQWLKDDAQSSHYQQQ---LSYQQAEHQL---SDAKSQLTTIEQQLASLEQQRQQ 333

Query: 333 AL 334
           A+
Sbjct: 334 AV 335


>gi|323699541|ref|ZP_08111453.1| hypothetical protein DND132_2133 [Desulfovibrio sp. ND132]
 gi|323459473|gb|EGB15338.1| hypothetical protein DND132_2133 [Desulfovibrio desulfuricans
           ND132]
          Length = 452

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 82/286 (28%), Gaps = 52/286 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + I  F  +    L      TI  G N  GK+ ++EA+  L+     R  + A   R
Sbjct: 2   ITKITIDNFMAHEHTELTLGPGVTILTGANNTGKSAVVEALRCLAT-NPARSPNPALYIR 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+         V+    +A +  K   + +                +E  ++ ++   V
Sbjct: 61  HGAKEA-RVEVEVDDGTRVAWVRTKRWAKYELWT----------PGAEEPEEYHKLQGRV 109

Query: 127 PSM----DRIFSGLSMERRRFLDRMVF-AIDPRHR------------------RRMIDFE 163
           P       R+       RR  +D  +    DP                       ++  +
Sbjct: 110 PEDVARALRLDQVELETRREAVDVHLGNQRDPVFLLNQPDSVMAEFFAASTESAHLLAMQ 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             ++ R R       D          +A+   +     ++ + AL  + +     E    
Sbjct: 170 NALKMRVRDAKREERD----------LADQAGR-AAGDLDRLAALPDIALRMEMAETLEA 218

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
             + L   +      +      EY   L      +  +   L G  
Sbjct: 219 DAVRLEQQI-----PALETALAEYRN-LTRALTREQAAGEALKGTQ 258


>gi|15674632|ref|NP_268806.1| putative chromosome segregation SMC protein [Streptococcus pyogenes
           M1 GAS]
 gi|71910252|ref|YP_281802.1| chromosome partition protein [Streptococcus pyogenes MGAS5005]
 gi|13621745|gb|AAK33527.1| putative chromosome segregation SMC protein [Streptococcus pyogenes
           M1 GAS]
 gi|71853034|gb|AAZ51057.1| chromosome partition protein [Streptococcus pyogenes MGAS5005]
          Length = 1179

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A+V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216
             +      L       Y   +  + +E Q  +A+  ++++  R ++ ++ L   I    
Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +++      L+        +     +++E+Y K
Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271


>gi|331091060|ref|ZP_08339902.1| chromosome segregation protein SMC [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405282|gb|EGG84818.1| chromosome segregation protein SMC [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 1186

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 96/268 (35%), Gaps = 39/268 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  R  S
Sbjct: 1   MYLKSIEVQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    I  +  T   +  R       IN  + R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNADHQLAIDFQEVTVTRKLYRSGESEYLINGSICR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +            
Sbjct: 121 LKDVNELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIV------------ 168

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFP 222
           +  R +N  + +   ++     +   ++EL  +I       +   S    EY+ +KE   
Sbjct: 169 KFKRRKNMSVKKLEEETQNLLRVTDILSELEKQIGP-----LEKQSEKAKEYLKKKEELK 223

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKK 250
              ++L      +  +    ++ + A  
Sbjct: 224 SYDINLFLMESVRIRKQIGEVERQLANA 251



 Score = 36.8 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 95/280 (33%), Gaps = 35/280 (12%)

Query: 87   DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146
            +I +K++          Q N   +   +EL+KH+        +D+    L+ ++  F + 
Sbjct: 884  EIELKIQNLSQEKEILTQKNKDFLTKREELSKHM------SDLDKESFRLNSKKETFEET 937

Query: 147  MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV---------KI 197
            +   I+       I + +    RN   T+          +++++  LG          K 
Sbjct: 938  LEKQINYMWEEYEITYSKARELRNETFTDLSEIKRQIQLLKSEIRGLGSVNVNAIEDYKN 997

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
               R + +      ++E   KE    I   L   +  +F + F  +  E+ K        
Sbjct: 998  VSERYDFLKTQYDDLVE--AKETLIQIIEELDTAMRKQFAERFKEIASEFDKVFKQLF-- 1053

Query: 258  DSMSRRTLIGPHRSDLI---VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISN 309
                + TL      D++   +    +            S GE+ +  + +  A       
Sbjct: 1054 -GGGKGTLELMEDEDILEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA-----IQ 1107

Query: 310  TTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
                +P  LLDEI A LD+       + +  +   +Q  +
Sbjct: 1108 NLKPSPFCLLDEIEAALDDSNVTRFAQYLHKLTKNTQFIV 1147


>gi|325126040|gb|ADY85370.1| Chromosome segregation protein Smc [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 1186

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 59/290 (20%), Positives = 98/290 (33%), Gaps = 36/290 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + F    T  VG NG GK+NI EAI ++      +  R  +
Sbjct: 1   MPLTSLILEGFKSFADKTVIDFTKGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGRN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSV-RCLQINDVVIR 111
             DV   GS      +        +  +   D S   + +  R  +S      IN   +R
Sbjct: 61  MKDVIFAGSQFRKPLNRAEVTMVFDNRDRELDFSADQVSITRRILKSGDNEYLINQQPVR 120

Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDR--MVFAIDPRHR----- 156
           + D     L       S+        D+I +  + ERR   +    V     + +     
Sbjct: 121 LRDVRALFLDSGISQNSLAIISQGRVDQILNSQARERRGIFEEAAGVLHFKQQKQQAQRQ 180

Query: 157 -----RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
                  +I    L+    + L   +  SS     + Q A L   +       I  L   
Sbjct: 181 LETTNDNLIRINDLVNELEKRLEPLHEQSSLAQEYQFQKAALDEDLKTLLAFEIADLDQE 240

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             E  QK       LS    LD +  QS   L  +  +   + +K D + 
Sbjct: 241 EREVSQKLAKSQELLS---RLDAEVKQSQAKLAAKRQEFQLESQKRDQVQ 287


>gi|300726126|ref|ZP_07059583.1| RecF/RecN/SMC N-terminal domain protein [Prevotella bryantii B14]
 gi|299776596|gb|EFI73149.1| RecF/RecN/SMC N-terminal domain protein [Prevotella bryantii B14]
          Length = 722

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 95/294 (32%), Gaps = 59/294 (20%)

Query: 5   IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + IK + I  FR+Y   + +  F    T+ +GDNG GKT   EA+ +L     F      
Sbjct: 1   MIIKEICIKNFRSYYGDNNKFEFSDGLTLILGDNGDGKTTFFEALQWL-----FNTTIDK 55

Query: 63  DVTRI-----------GSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQIN---- 106
                           G     S     E   E   + S  +E  DD + R   +N    
Sbjct: 56  GNIDHVSEMRKSKLDIGEKDEVSVSMLFEHDGEKYVEKSFSVERTDDNNFRIGSLNYIGY 115

Query: 107 -------------DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP 153
                        +++ R  D   +  R S      +          +  +D+     D 
Sbjct: 116 ETSGSERVKVSGKNLIDRCYDAFIQ--RFSMFKGESELNVFNNPAALKDLVDKF---SDI 170

Query: 154 RHRRRMIDFERLMRGR--NRLLTEGYFDSS---WCSSIEAQMAELGVKINIARVEMINAL 208
           R    ++++    + +     L E   D        S+E Q+  LG +I+  + ++    
Sbjct: 171 RKFDDLVEYTTSFKEKANAAYLKEMKSDKKVSGEAKSLELQINRLGEEISTKKQDI---- 226

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
                    K+    +++      D + +Q      ++   +L +  +     +
Sbjct: 227 ---------KDKTTSLEIYSKRLGDLEANQEASERYKDIQSRLKNKEERSRKLK 271


>gi|229031478|ref|ZP_04187478.1| Chromosome partition protein smc [Bacillus cereus AH1271]
 gi|228729767|gb|EEL80747.1| Chromosome partition protein smc [Bacillus cereus AH1271]
          Length = 1189

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|229134656|ref|ZP_04263465.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST196]
 gi|228648702|gb|EEL04728.1| Chromosome partition protein smc [Bacillus cereus BDRD-ST196]
          Length = 1189

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|153874843|ref|ZP_02002905.1| ATP-binding protein [Beggiatoa sp. PS]
 gi|152068693|gb|EDN67095.1| ATP-binding protein [Beggiatoa sp. PS]
          Length = 343

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP-----GRGFRRA 59
           +KIK L+I+ F  +   +  F     + +G NG GKT+ ++A+  + P      + F   
Sbjct: 1   MKIKDLSITNFTAFEQAQFNFCEGINVLIGANGTGKTHAMKAMYAVVPDSRDWYKIFNLP 60

Query: 60  SYADVTRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
               + R  S    F S    ++       + +   T+       ++IN
Sbjct: 61  KLQYLIRNNSEDKDFVSGITSIQNPNKDC-MEVIFHTKSRDRAAEIKIN 108


>gi|11498637|ref|NP_069865.1| chromosome segregation protein [Archaeoglobus fulgidus DSM 4304]
 gi|18201999|sp|O29230|RAD50_ARCFU RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|2649562|gb|AAB90211.1| purine NTPase, putative [Archaeoglobus fulgidus DSM 4304]
          Length = 886

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 33/66 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +K L I  FR+++  ++ FD    +  G NG GK++ILEAI     G         D+ R
Sbjct: 4  LKELQIKNFRSHSDSKIEFDTGINLIAGRNGAGKSSILEAILVAFYGLKPATLRKNDLVR 63

Query: 67 IGSPSF 72
          + S  +
Sbjct: 64 VNSSGY 69



 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 79/201 (39%), Gaps = 22/201 (10%)

Query: 166 MRGRNRLLTEG-YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           ++ R   L E           +E Q+A    K++  R ++       + E +       I
Sbjct: 677 LKSRLETLRESLQSAEKDLKFLEEQLA----KMDEYRKKV------EVFEKIAIPELTRI 726

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD-----SMSRRTLIGPHRSDLIVDYCD 279
           +     + +   + S   + E YA ++F+           + + T  G  +  + V Y  
Sbjct: 727 REKFRKYRNLVAENSMREV-ERYASQIFEELTEGKYSGVRLKKTTERGKEKLKVFVVYQG 785

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           +   I   S GE   + +   LA +  +    G  P+L+LDE +  LDE++R  L  I T
Sbjct: 786 EEREIGFLSGGEIIALGLAFRLALSMFM--IRGKIPLLILDEPTPFLDEERRRKLVDITT 843

Query: 340 D---IGSQIFMTGTDKSVFDS 357
           +      Q+ +   D+ + D+
Sbjct: 844 NYLRKIPQVIIVSHDEELKDA 864


>gi|207342761|gb|EDZ70423.1| YLR383Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1067

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK + +  F  +    L   ++    VG+NG GK+ IL AI+     +     R +S  D
Sbjct: 35  IKKVILRNFMCHEHFELELGSRLNFIVGNNGSGKSAILTAITIGLGAKASETNRGSSLKD 94

Query: 64  VTRIGS 69
           + R G 
Sbjct: 95  LIREGC 100


>gi|311748558|ref|ZP_07722343.1| hypothetical protein ALPR1_19853 [Algoriphagus sp. PR1]
 gi|126577077|gb|EAZ81325.1| hypothetical protein ALPR1_19853 [Algoriphagus sp. PR1]
          Length = 631

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 55/367 (14%), Positives = 121/367 (32%), Gaps = 39/367 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++I  F+   S    FD++  I +G+NG  KT +++AI  L              
Sbjct: 1   MYLSKVHIQNFKGIKSQEFSFDSKLNIIIGENGSHKTALIDAIRLLYNMG---NPKKDYY 57

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                  F  T +       +  I   L + +  ++    + +  I        +   + 
Sbjct: 58  ISNDDFHFDKTTSAQATKIEIRYIFDGLSSSEKGALYEYLVIEPTIEYAQITLIYELRAN 117

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
             P         + ++       +F     +   + D                   S   
Sbjct: 118 NYPKFSYFTGASAEQKADSGTFEIFQ--HYYLGALRD-------------------STND 156

Query: 185 SIEAQMAELGVKI--NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            +  +   LG  I   + R +  +    +I     +       L+    ++   D  F  
Sbjct: 157 LLNTKTNMLGSVIKRIVERAKTEDEFKKIIQTANTELLKRDEVLNTRTGVNEHLDDIFKI 216

Query: 243 LKE-EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            K+ +   ++ +  K++S+    +I P+         +    +   S G   ++ + I L
Sbjct: 217 SKDNQIGMRIEESSKIESIL--NVIKPYLPHDKTKLDNDGFNLWQNSLGFNNLIYIAIIL 274

Query: 302 AHARLIS-NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG----SQIFMTG-----TD 351
              +  + +      +LL++E  AHL    +  L+  +   G     Q+F+T      T 
Sbjct: 275 GDIKQRTVDNPNQHFVLLIEEPEAHLHPQLQLNLYDFLKTAGSPNNCQLFITSHSPTLTS 334

Query: 352 KSVFDSL 358
           K+  D+L
Sbjct: 335 KANLDNL 341


>gi|94989949|ref|YP_598049.1| chromosome partition protein smc [Streptococcus pyogenes MGAS10270]
 gi|94543457|gb|ABF33505.1| Chromosome partition protein smc [Streptococcus pyogenes MGAS10270]
          Length = 1179

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A+V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216
             +      L       Y   +  + +E Q  +A+  ++++  R ++ ++ L   I    
Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +++      L+        +     +++E+Y K
Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271


>gi|78189560|ref|YP_379898.1| ATPase [Chlorobium chlorochromatii CaD3]
 gi|78171759|gb|ABB28855.1| ATPase [Chlorobium chlorochromatii CaD3]
          Length = 427

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 64/385 (16%), Positives = 132/385 (34%), Gaps = 83/385 (21%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-------- 56
           ++I+ L +  F+ + S    F     + VG NG GKT++L+A++  + G  F        
Sbjct: 1   MRIEHLIVKNFKGFVSKEFTFHPNFNLIVGMNGTGKTSMLDALAV-AIGSWFLGFYVDSL 59

Query: 57  --RRASYADV----TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
             R+  + DV     +      +       G+     I    E       R    N + I
Sbjct: 60  KMRQIRHDDVLLKYIQHSWEHIYPCEVEAYGVVMDRHIKWSRELNTING-RTTYGNALAI 118

Query: 111 RVVDELNKHLRISWLVPSM--DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +   EL      S L        + S     R       ++  +PR   ++ D  ++   
Sbjct: 119 K---ELALQATRSMLNGDDIILPLISYYGTGR-------LWQ-EPREAFKVSDPRKVANK 167

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
             +    GYF+     SIE +++             +N L+  I +             +
Sbjct: 168 ETQSRRTGYFN-----SIEPRLS-------------VNQLTQWIAQQSW----------I 199

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                G+    F  +++     + D +K+  D+            ++IV++       ++
Sbjct: 200 AYQEQGQVFPVFNTVQDAIIGCIEDAKKLYFDAKLG---------EVIVEFSSGTQPFSN 250

Query: 287 GSTGEQKVVL----VGIFLAHA------RLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
            S G++ ++     +    A         ++  T G   ++L+DE+  HL    +  +  
Sbjct: 251 LSDGQRCMLAMVGDIAHKAAKLNPHLGSDVLKETNG---VVLIDELDLHLHPRWQRRVIE 307

Query: 337 IVTDI--GSQIFMTGTDKSVFDSLN 359
            + ++    Q   T     +  SL 
Sbjct: 308 DLRNVFPKIQFICTTHSPFLIQSLR 332


>gi|188586140|ref|YP_001917685.1| ATP-dependent endonuclease family protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350827|gb|ACB85097.1| ATP-dependent endonuclease family protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 586

 Score = 59.5 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 63/378 (16%), Positives = 130/378 (34%), Gaps = 44/378 (11%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYA 62
           +I++  + I+ FR      L+F  +HT+FVGDN  GK+ ILEA+   L P R FR     
Sbjct: 3   KIRVAKIKINNFRGIKFSELIF-PEHTVFVGDNNSGKSTILEALDLTLGPERLFRTPVID 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-------------INDVV 109
           +        +   +   +      +I + +   ++   R  +             IN+  
Sbjct: 62  E-----HDFYAGEYLDNDNNPINIEIEVVIINLNEEQSRYFRNNIEWWDQDEQALINEPP 116

Query: 110 IRVVDE--LNKHLRISW---LVPSMDRIFSGLSMERRRFLDRMVFAI---DPRHRRRMID 161
               D+  +   LR+ +        D  F           D  + +    D R+   +  
Sbjct: 117 PEKTDKESVQPALRVRFEGNYDSEEDDFFGRTYYASPEVEDGSMTSFTKKDKRYCGFL-- 174

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           F R +R  +R L     + S    I  ++ EL + I    ++ ++ L     +    +  
Sbjct: 175 FLRTLRTGSRAL--SLENGSLLDII-LRLQELKLPIWEEILKQLDQLKIAAPDSEINQIL 231

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
             I+ S+  F+  ++  +     +     L        ++     G  RSD      + +
Sbjct: 232 REIESSIHSFVPNEWANNP----QMKVSGLTRQNLKKIITFFMGTGATRSD----GSEHS 283

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               +  TG    +++ + L+    +        I  ++E    +    +  +   +   
Sbjct: 284 APFKYQGTGTINTMVLTL-LSMIAELKQQQN--VIFAMEEPEIAIPPHTQKRIIHSICSK 340

Query: 342 GSQIFMTGTDKSVFDSLN 359
             Q   T     V +  +
Sbjct: 341 SDQAIFTSHSPYVLEEFD 358


>gi|294794069|ref|ZP_06759206.1| hypothetical protein HMPREF0873_00663 [Veillonella sp. 3_1_44]
 gi|294455639|gb|EFG24011.1| hypothetical protein HMPREF0873_00663 [Veillonella sp. 3_1_44]
          Length = 564

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          + IK+++I  +RN A + L F      FVG+N VGK+N L+ +  +    GF
Sbjct: 10 MYIKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIIMECHGF 61


>gi|303231370|ref|ZP_07318104.1| conserved hypothetical protein [Veillonella atypica
          ACS-049-V-Sch6]
 gi|302513966|gb|EFL55974.1| conserved hypothetical protein [Veillonella atypica
          ACS-049-V-Sch6]
          Length = 566

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + ++++ I  +RN   + L F      FVG+N VGK+N L+ +  +   RGF+ + +ADV
Sbjct: 3  MFMEWIKIENYRNLVDIELHFHNDINYFVGENAVGKSNFLDLLEQMMNARGFQESDFADV 62

Query: 65 ---TRIGSPSFFS 74
              RI     FS
Sbjct: 63 HRPIRIECKMSFS 75


>gi|284051026|ref|ZP_06381236.1| DNA repair protein RecN [Arthrospira platensis str. Paraca]
          Length = 622

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 61/197 (30%), Gaps = 21/197 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L L       +F G+ G GK+ IL+A+  +  G+           R
Sbjct: 32  LISLRIENFALIDHLDLELGPGLNVFTGETGAGKSIILDAVDAVLGGK-----VDRRSIR 86

Query: 67  IGS-----PSFFSTFARVEGMEGLADISI----------KLETRDDRSVRCLQINDVVIR 111
            G       + F     +       +I +          +L    D+     ++N +++ 
Sbjct: 87  TGCDRAILEACFEVNPDLIDWFREQEIDLVDGSLVVCCRELVVNQDKFRSKSRLNGILVS 146

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRN 170
                    R   +      +  G    +R +LD    +     R R+ + + R    +N
Sbjct: 147 RTIIDGLRDRFVEITAQGQTVQLGKPALQREWLDLYGGSNTIGLRERVSEAYTRAREVQN 206

Query: 171 RLLTEGYFDSSWCSSIE 187
            L             I+
Sbjct: 207 ALQKRRQDSQQRLQRID 223


>gi|229174514|ref|ZP_04302046.1| Chromosome partition protein smc [Bacillus cereus MM3]
 gi|228609074|gb|EEK66364.1| Chromosome partition protein smc [Bacillus cereus MM3]
          Length = 1189

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|257414054|ref|ZP_04745105.2| putative cell division protein Smc [Roseburia intestinalis L1-82]
 gi|257201360|gb|EEU99644.1| putative cell division protein Smc [Roseburia intestinalis L1-82]
          Length = 1190

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 26/223 (11%)

Query: 1   MTNRIKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGF 56
           M   + +K + +  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  
Sbjct: 1   MRFSMYLKSIEVQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQL 60

Query: 57  RRASYADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQIND 107
           R AS  D+   G+      S+      ++  +    +  +  T   R  R       +N 
Sbjct: 61  RGASMQDIIFAGTENRKPLSYAYVAITLDNADHKLPVDYEEVTVARRVYRSGESEYLLNG 120

Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
              R+ D         + K          +++I +G   ERR   D     +  + R+  
Sbjct: 121 NTCRLKDVTELFYDTGIGKEGYSIIGQGQIEKILNGKPEERRELFDEAAGIVKYKKRKAT 180

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
              ++L   R  L+          S +E Q+  L  +   ARV
Sbjct: 181 AQ-KKLENERENLVRVN----DILSELERQVGPLEKQAEKARV 218



 Score = 36.0 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 27/240 (11%)

Query: 126  VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            +  +D+    L+ +R +  D   +  +        ++E  +     L  + Y D S    
Sbjct: 921  ISELDKEVFRLNSQREKLNDAREYQTN----YMWQEYELTLHAAMDLRDDTYDDLSTLKK 976

Query: 186  IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + AQ+ +   K+    V  I     +   Y   +      +     L G  ++    +++
Sbjct: 977  MIAQIRDEIRKLGDVNVNAIEDYKEISERYQFLKTQHDDLIEAEKTLIGIIEELDTGMRK 1036

Query: 246  EYAKKLFDGRK------MDSMSRR--TLIGPHRSDLI---VDYCDKAITIAHG-----ST 289
            ++ +K  + +K       +       TL      D++   +    +            S 
Sbjct: 1037 QFMEKFAEIQKQFDTVFKEMFGGGKGTLELVEDEDILECGIRIIAQPPGKKLQNMMQMSG 1096

Query: 290  GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
            GE+ +  + +  A           +P  LLDEI A LD+       + +  +   +Q  +
Sbjct: 1097 GEKSLTAIALLFA-----IQNLKPSPFCLLDEIEAALDDSNVTRFAKYLHKLTQNTQFIV 1151


>gi|60680633|ref|YP_210777.1| hypothetical protein BF1102 [Bacteroides fragilis NCTC 9343]
 gi|60492067|emb|CAH06829.1| conserved hypothetical protein with RecF/RecN/SMC N-terminal
          domain [Bacteroides fragilis NCTC 9343]
          Length = 691

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 25/46 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  +++  +RN+ +   +F+      +G+N  GKTN+  AI  +
Sbjct: 1  MYISKVSLVNYRNFENSFFLFNKGINTIIGENASGKTNLFRAIRLI 46


>gi|304316937|ref|YP_003852082.1| chromosome segregation protein SMC [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778439|gb|ADL68998.1| chromosome segregation protein SMC [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1183

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60
           + +K L I  F+++A  + L F+   T  VG NG GK+NI +A+  +      +  R   
Sbjct: 1   MFLKRLEIIGFKSFADKVVLNFEKGITAIVGPNGSGKSNISDAVRLVLGEQSIKSLRGNK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV  +G+      SF      ++  +    +    + +  +  RS      IN    R
Sbjct: 61  LEDVIFVGTDKRKPLSFAEVNLTLDNSDHTLPLDFTEVVITRKIFRSGESEFYINKTQCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D     +                +D I      +RR+  +
Sbjct: 121 LKDVYELFMDTGIGRDGYSIIGQGKIDEILVSRPEDRRQIFE 162


>gi|291296472|ref|YP_003507870.1| DNA repair protein RecN [Meiothermus ruber DSM 1279]
 gi|290471431|gb|ADD28850.1| DNA repair protein RecN [Meiothermus ruber DSM 1279]
          Length = 523

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 84/270 (31%), Gaps = 39/270 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +        + L F    T+  G+ G GK+ +++A+S L   +         + R
Sbjct: 2   LERLEVQNLAVLEQVALDFSPGLTVLTGETGAGKSVLVDALSLLLGEK------AEGLVR 55

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+ +   T                L  +  +     +I+  V+ + +   +  +   + 
Sbjct: 56  SGAETLLVTAFFN---------GKSLSRKVAQGRSTARIDGEVVSLRELSEETAQHLTIH 106

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDP----RHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
                +       +R+ LD     + P    R++     ++ ++R   RL          
Sbjct: 107 AQHASLTLFSRKAQRKLLD---SQVKPDLLVRYQNAYGQYQSILRETERLEAAARERERR 163

Query: 183 CSSIEAQMAELGVKIN-----------IARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +  Q+AE+                  R+  + AL   +   +         L L   
Sbjct: 164 LDILRFQIAEIDQARLVVGEEEQLKQEAERLRHLEALRERVSAAISALGGEGDALGLVTL 223

Query: 232 LD------GKFDQSFCALKEEYAKKLFDGR 255
                   G+FD    +L  +    L   R
Sbjct: 224 ASREVKAAGRFDAHLESLSRDLEAALDALR 253


>gi|212638792|ref|YP_002315312.1| DNA repair ATPase [Anoxybacillus flavithermus WK1]
 gi|212560272|gb|ACJ33327.1| ATPase involved in DNA repair [Anoxybacillus flavithermus WK1]
          Length = 576

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 78/260 (30%), Gaps = 34/260 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L F+   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFEKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGS--PSFFSTFARVEGME----GLADISIKLETRDDRSVRCLQINDV----------VI 110
            G         F   +G        A++ I +        R L IN             I
Sbjct: 57  YGETKAEIEGLFLLEQGDHPCYSKCAELGIDISDGMIVLRRELTINGKSVCRVNGKLVTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + E+   L           +            +    +      +      +ER+ R 
Sbjct: 117 ATLREIGSTLVDIHGQHEHQELLDESKHLHLLDEYGGERIREALEEYGSLYTAYERVKRQ 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSSLIMEYVQ 217
             +L       +     +  Q+ E+           ++   R +++N   +   +    +
Sbjct: 177 LQKLNENEQQMAHRLDLLTFQLDEIQKAELQLDEDEQLMEERRKIVNFQKIYEALQSSYE 236

Query: 218 KENFPHIKLSLTGFLDGKFD 237
                   L   G      D
Sbjct: 237 ALYGEQRGLDWIGLAMNHLD 256


>gi|163941586|ref|YP_001646470.1| chromosome segregation protein SMC [Bacillus weihenstephanensis
           KBAB4]
 gi|229013031|ref|ZP_04170196.1| Chromosome partition protein smc [Bacillus mycoides DSM 2048]
 gi|229168587|ref|ZP_04296310.1| Chromosome partition protein smc [Bacillus cereus AH621]
 gi|163863783|gb|ABY44842.1| chromosome segregation protein SMC [Bacillus weihenstephanensis
           KBAB4]
 gi|228614993|gb|EEK72095.1| Chromosome partition protein smc [Bacillus cereus AH621]
 gi|228748285|gb|EEL98145.1| Chromosome partition protein smc [Bacillus mycoides DSM 2048]
          Length = 1189

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|49481925|gb|AAT66674.1| DNA repair and genetic recombination protein [Geobacillus
           uzenensis]
          Length = 573

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/271 (18%), Positives = 85/271 (31%), Gaps = 39/271 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGL------ADISIKLETR--------DDRSVRCLQINDVVIRV 112
            G+         +   E        A++ I                     +IN  ++  
Sbjct: 57  FGAEKAEIEGLFLLDDERHPCCQKCAEVGIDASEGMVVLRRDILANGKSVCRINGKLVTT 116

Query: 113 V--DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
               E+   L           +           LD    A        +  +  +     
Sbjct: 117 AVXREIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGAEA---AEALARYRAVYEQHE 171

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
            L  +        S  E QMA         R++++       +E    E     +L    
Sbjct: 172 ALAKKLKK----LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDERLMEEK 218

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                F + + A+++ Y     +GR +DS+ 
Sbjct: 219 VRIVNFQKIYEAIQKSYGALAGEGRGLDSIR 249


>gi|229526561|ref|ZP_04415965.1| hypothetical protein VCA_000689 [Vibrio cholerae bv. albensis
           VL426]
 gi|229336719|gb|EEO01737.1| hypothetical protein VCA_000689 [Vibrio cholerae bv. albensis
           VL426]
          Length = 542

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 68/413 (16%), Positives = 141/413 (34%), Gaps = 85/413 (20%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI-----SFLSPG- 53
           +  +++  L +  +R + SL + F  +   T+ VG+NG GK++IL+AI      F+S   
Sbjct: 59  SANLRLASLKLIGYRGFESLDITFSQKSNITVLVGNNGSGKSSILDAIQKSLTHFVSRLS 118

Query: 54  -RGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQIN--D 107
            R +      ++      +F +     +  E      +          +  +  ++N   
Sbjct: 119 TRSYNGDQLDELDISNGATFVTVIPEFKVAETSFSFELSQSRPMIEPRKKSKFTELNEIG 178

Query: 108 VVIRVV----DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM---I 160
            + R+      EL+  L  S+ V   + + +    E    L   ++     + + +    
Sbjct: 179 NLYRLANTEKKELSLPLLASYTVERANDVTTKDIEESDEILSSQIWDKSKAYSKSLTGKA 238

Query: 161 DFE--------------------RLMRGRNRLLTEGYFDSSWCSSI--EAQMAELGVKIN 198
           DF+                    ++++       E   +SS   +I    + AE G  + 
Sbjct: 239 DFKLFFRWFKEQVESENDEVSDIKVIKA-QIESKESEINSSLMKAILSNPETAETGEILI 297

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
               + IN L   + E   K N  +  L        KF   F  LK + A          
Sbjct: 298 KQYKDQINDLQEQLNE---KSNVGNKSLDSVRNAIYKFLPGFSDLKLKRAPL-------- 346

Query: 259 SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT------- 311
                        D++V    +  ++   S GE+   ++ +    A +    T       
Sbjct: 347 -------------DMVVKKDGQEFSVLQLSQGEK--SVLALI---ADIARRLTMLNPSLA 388

Query: 312 ---GFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
                + ++L+DE+  HL    +  + + +       Q  +T     V  +L+
Sbjct: 389 NPLEGSGLVLIDEVDLHLHPSWQQKIMQRLESTFPNLQFIVTTHSPQVCHTLD 441


>gi|50913819|ref|YP_059791.1| chromosome partition protein smc [Streptococcus pyogenes MGAS10394]
 gi|50902893|gb|AAT86608.1| Chromosome partition protein smc [Streptococcus pyogenes MGAS10394]
          Length = 1179

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A+V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216
             +      L       Y   +  + +E Q  +A+  ++++  R ++ ++ L   I    
Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +++      L+        +     +++E+Y K
Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271


>gi|299771369|ref|YP_003733395.1| chromosome segregation protein SMC [Acinetobacter sp. DR1]
 gi|298701457|gb|ADI92022.1| chromosome segregation protein SMC [Acinetobacter sp. DR1]
          Length = 1149

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 104/298 (34%), Gaps = 54/298 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGSYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   RIF   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192
             + +   +     R+ D    ++ + + L      +    ++E+Q+           A+
Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRILKIEILSFQAD 238

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             V++       +N L         + +     L  T  L  +  Q    L++E+ + 
Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLEATSALFQRLIQQSSPLQQEWQQA 296


>gi|94988069|ref|YP_596170.1| chromosome partition protein [Streptococcus pyogenes MGAS9429]
 gi|94991955|ref|YP_600054.1| chromosome partition protein smc [Streptococcus pyogenes MGAS2096]
 gi|94541577|gb|ABF31626.1| chromosome partition protein [Streptococcus pyogenes MGAS9429]
 gi|94545463|gb|ABF35510.1| Chromosome partition protein smc [Streptococcus pyogenes MGAS2096]
          Length = 1179

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A+V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216
             +      L       Y   +  + +E Q  +A+  ++++  R ++ ++ L   I    
Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +++      L+        +     +++E+Y K
Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271


>gi|27377607|ref|NP_769136.1| chromosome segregation protein [Bradyrhizobium japonicum USDA 110]
 gi|27350752|dbj|BAC47761.1| chromosome segregation protein [Bradyrhizobium japonicum USDA 110]
          Length = 1154

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +KI  L +  F+++      V +   T  VG NG GK+N++EA+ +    +  +  R A 
Sbjct: 1   MKITRLRLHGFKSFVEPTDFVIEPGLTGVVGPNGCGKSNLVEALRWAMGETSYKSLRAAD 60

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADIS----------IKLETRDDR-SVRCLQINDV 108
              V   GS        A V      AD +          +++  R +R +    +IN  
Sbjct: 61  MDAVIFAGSGNRPARNHAEVTMTIDNADRTAPAAMNDSQLLEISRRIEREAGSVYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166


>gi|85703697|ref|ZP_01034801.1| hypothetical protein ROS217_23187 [Roseovarius sp. 217]
 gi|85672625|gb|EAQ27482.1| hypothetical protein ROS217_23187 [Roseovarius sp. 217]
          Length = 674

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRR 58
          + I+ L +  FR +      +  D + T F+GDNG GKT +L+A+  L    S  R  RR
Sbjct: 1  MYIRELRLKNFRCFGDHEEVISLDPEMTAFIGDNGSGKTTVLKALQRLFGSTSNERSLRR 60


>gi|299134656|ref|ZP_07027848.1| chromosome segregation protein SMC [Afipia sp. 1NLS2]
 gi|298590466|gb|EFI50669.1| chromosome segregation protein SMC [Afipia sp. 1NLS2]
          Length = 1154

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K+  L +  F+++  +   + +   T  VG NG GK+N++EA+ +    +  +  R A 
Sbjct: 1   MKLTRLRLHGFKSFVEATDFLIEPGLTGVVGPNGCGKSNLVEALRWAMGETSYKSLRAAD 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
              V   G     + +       ++  +  A  S      +++  R +R +    +IN  
Sbjct: 61  MDAVIFSGSGNRPARNHAEVVMTIDNSDRSAPSSMNDSELLEVSRRIEREAGSVYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQARPDQRRRVLED 166



 Score = 39.5 bits (91), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  +++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1042 GKKPQSLSLLSGGEQALTALALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1096

Query: 338  VTDI 341
            + ++
Sbjct: 1097 LHEM 1100


>gi|157151450|ref|YP_001450083.1| chromosome segregation protein SMC [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157076244|gb|ABV10927.1| chromosome segregation protein SMC [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 1177

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 120/338 (35%), Gaps = 39/338 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E + +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITEGLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKNAAKEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIE--AQMAELGVKINIARVE-MINALSSLIMEYV 216
             +      L       Y        +E  AQ A+  ++++  R E  ++ L + +    
Sbjct: 179 SKLAQTQDNLDRLEDIIYELDGQIKPLEKQAQTAKRFLELDQERRELYLDVLVAQMTANK 238

Query: 217 QK-----ENFPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
           +K     EN   I+  L+ +   + + +      +    +L      D      L     
Sbjct: 239 EKLNQAEENLAKIQEELSAYYSKRDELELENQTLKSKRHELNQTLAADQAKLLELTRLIS 298

Query: 271 S-DLIVDYCDKAITIAHGSTGEQ--KVVLVGIFLAHAR 305
             +  +D      + A  S  E   ++ ++   L    
Sbjct: 299 DLERQIDLSKLESSQAASSRKENEARMAVLAEKLEQTE 336



 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   M+ + + G   +DLI+   D      
Sbjct: 1006 LSAKNLLLTTIEEMNDEVKERFKSTFEAIRESFKMTFKQMFGGGSADLILTEGDLLTAGV 1065

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1066 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1120

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1121 VKRFGDYLNRFDKESQFIV 1139


>gi|229061451|ref|ZP_04198796.1| Chromosome partition protein smc [Bacillus cereus AH603]
 gi|228717874|gb|EEL69522.1| Chromosome partition protein smc [Bacillus cereus AH603]
          Length = 1189

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I+ F+++   + + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1   MFLKRLEIAGFKSFAERVSVDFVPGVTSVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +      A V       D  + +E  +    R +  + 
Sbjct: 61  MEDIIFAGSDTRRAVNVAEVTLTLNNEDQRLPIEYNEVCVTRRVSRSG 108


>gi|145298233|ref|YP_001141074.1| chromosome segregation protein SMC [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851005|gb|ABO89326.1| chromosome segregation protein SMC [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 1124

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 120/369 (32%), Gaps = 62/369 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    R+ F A  T  VG NG GK+N+++A+ ++   S  R  R  +
Sbjct: 1   MRLKLIKLAGFKSFVEPTRIEFSADMTAVVGPNGCGKSNVIDAVRWVLGESSARHLRGEN 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS +            F +   RV G  G   +IS++ E   D S    QIN 
Sbjct: 61  MTDVIFNGSINRSPHGRASVELVFDNPHNRVPGEFGRFTEISVRREVLRDGSN-HYQING 119

Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
              R  D         L           ++ R+      + + F++        R++ R 
Sbjct: 120 QKCRRKDVTDLFLGTGLGPRSYAIIEQGTVSRLVESRPADLKLFMEEAAG--VSRYKERR 177

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
            + E+ +R     L           S    +          R + + + S      +   
Sbjct: 178 RETEQRIRHTQENLERLGDIRGELGSRLEHLKAQAE--TAERYKQLKSRSRAARAELIGS 235

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
               ++  L         ++     E+    L   R  D     TL              
Sbjct: 236 ELWALETRL------GEAKAELTQAEQALAALDAKRTQDEGRHVTL----------SVAR 279

Query: 280 KAITIAHGSTGEQKVVL---VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
           +       S  +Q++ L       L   +L     G    +            +R AL  
Sbjct: 280 QEAQAEQASR-QQQIFLGGQAIARLEQQQLHQTELGRDWQI------------RRQALGE 326

Query: 337 IVTDIGSQI 345
            +  I +Q+
Sbjct: 327 RIEGIRAQL 335



 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 16/177 (9%)

Query: 180  SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                 ++EAQ+  LG     A  E   A +       Q ++      +L+  +     ++
Sbjct: 907  RQEIQTLEAQVEALGAINLAALEEYEEAKTRSTYLESQCQDLEQALETLSQAIKRIDKET 966

Query: 240  FCALKEEY---AKKLFDGRKMDSMSRRTLIGPHRSDLIVDY--------CDKAITIAHGS 288
                ++ +    + L              +     DL+             K  TIA  S
Sbjct: 967  QIRFRDTFDKVNEDLKSLFPKVFGGGSAWLELTSDDLLEAGVSIMARPPGKKNATIALLS 1026

Query: 289  TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
             GE+ +  + +  A  RL       AP  LLDE+ A LDE        +V ++ S +
Sbjct: 1027 GGEKALTALALVFAIFRL-----NPAPFCLLDEVDAPLDEVNVGRFCSLVKEMSSTV 1078


>gi|139474236|ref|YP_001128952.1| chromosome partition protein [Streptococcus pyogenes str. Manfredo]
 gi|134272483|emb|CAM30746.1| putative chromosome partition protein [Streptococcus pyogenes str.
           Manfredo]
          Length = 1179

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A+V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216
             +      L       Y   +  + +E Q  +A+  ++++  R ++ ++ L   I    
Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +++      L+        +     +++E+Y K
Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271


>gi|94993855|ref|YP_601953.1| chromosome partition protein smc [Streptococcus pyogenes MGAS10750]
 gi|94547363|gb|ABF37409.1| Chromosome partition protein smc [Streptococcus pyogenes MGAS10750]
          Length = 1179

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A+V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216
             +      L       Y   +  + +E Q  +A+  ++++  R ++ ++ L   I    
Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +++      L+        +     +++E+Y K
Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271


>gi|291544314|emb|CBL17423.1| chromosome segregation protein SMC, common bacterial type
           [Ruminococcus sp. 18P13]
          Length = 1188

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++   ++L FD   T  VG NG GK+NI +A+ ++      +  R   
Sbjct: 1   MYLKSLELQGFKSFPDKIKLSFDKGLTAVVGPNGSGKSNIGDAVRWVLGEQSTKTLRGNK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGL---ADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ +     F +    ++  +G     D  + +  R  RS     QIN   +R
Sbjct: 61  MEDVIFSGTEARKPVGFAAVTLTIDNEQGELASEDREVSVTRRLFRSGESEYQINGKNVR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|306827818|ref|ZP_07461088.1| chromosome partition protein smc [Streptococcus pyogenes ATCC
           10782]
 gi|304429988|gb|EFM33027.1| chromosome partition protein smc [Streptococcus pyogenes ATCC
           10782]
          Length = 1179

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A+V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216
             +      L       Y   +  + +E Q  +A+  ++++  R ++ ++ L   I    
Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +++      L+        +     +++E+Y K
Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271


>gi|282850579|ref|ZP_06259958.1| hypothetical protein HMPREF1035_1912 [Veillonella parvula ATCC
          17745]
 gi|282580072|gb|EFB85476.1| hypothetical protein HMPREF1035_1912 [Veillonella parvula ATCC
          17745]
          Length = 555

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          + IK+++I  +RN A + L F      FVG+N VGK+N L+ +  +    GF
Sbjct: 1  MYIKWMHIENYRNLADVTLSFHNDINYFVGENAVGKSNFLDLLEIIMECHGF 52


>gi|254487740|ref|ZP_05100945.1| conserved hypothetical protein [Roseobacter sp. GAI101]
 gi|214044609|gb|EEB85247.1| conserved hypothetical protein [Roseobacter sp. GAI101]
          Length = 692

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
          + +K + +  FR    + + F+   T+FVG N  GKT+   AI      R F  +  
Sbjct: 1  MHLKKITVRNFRRLKDVSIDFEESETVFVGPNNSGKTSATAAI------RSFLSSRD 51


>gi|15789609|ref|NP_279433.1| chromosome segregation protein [Halobacterium sp. NRC-1]
 gi|169235321|ref|YP_001688521.1| chromosome segregation protein [Halobacterium salinarum R1]
 gi|10579965|gb|AAG18913.1| chromosome segregation [Halobacterium sp. NRC-1]
 gi|167726387|emb|CAP13170.1| chromosome segregation protein [Halobacterium salinarum R1]
          Length = 1190

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 67/385 (17%), Positives = 133/385 (34%), Gaps = 84/385 (21%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + I+ L +  F+++A + R+ F    T   G NG GK+NI++AI F   L+   G R  +
Sbjct: 1   MYIEELVVENFKSFAGTTRIPFYEDFTTISGPNGSGKSNIIDAILFALGLARTTGMRAET 60

Query: 61  YADVT----RIGSPSFFS-TFARVE-------GMEGLADISIKLETRDDRSVRCLQINDV 108
             D+       G+      T A VE       G+   + ++    + +  SV  + I   
Sbjct: 61  LTDLIYNPAHEGADGAAGPTEASVEVVLNNDAGVVSRSQVTTAAGSENVGSVDTITIKRR 120

Query: 109 VIRV----------------VDELNKHLRISWLVPSMDRIFSGL---------SMERRRF 143
           V R                 + ++ + L  + + P    +             + ERR  
Sbjct: 121 VKRTDDSHYSYYYLNDRSVNLADIQELLAQAGIAPEGYNVVMQGDVTGIINMTAGERREI 180

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           +D +           + +F+   + R+               +E ++ E  +KI+  R  
Sbjct: 181 IDEIAG---------VAEFDA--KKRDAF--------EELDVVEERIGEAELKIDEKRDR 221

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGF------LDGKFDQSFCALKEEYAKKLFDGRKM 257
            ++ L+      ++ ++    K    G+       + + D S      +  ++  +G   
Sbjct: 222 -LDRLADERETALEYQDLQEEKQEYEGYAKAAELEETRADLSATRADIDEQERELEGLTA 280

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG----- 312
           +   RR  +G   +DL     +           EQ        LA  R I    G     
Sbjct: 281 ELDERRDTVGRIEADLAALNAEIERKGED----EQ--------LAIKREIEEIKGEVSRL 328

Query: 313 FAPILLLDEISAHLDEDKRNALFRI 337
              +   ++     D ++R A+  I
Sbjct: 329 EDTVAACEDRVQDADAERREAVVEI 353


>gi|18977539|ref|NP_578896.1| chromosome segregation protein [Pyrococcus furiosus DSM 3638]
 gi|17380251|sp|P58301|RAD50_PYRFU RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|18893248|gb|AAL81291.1| smc-like protein [Pyrococcus furiosus DSM 3638]
          Length = 882

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K++ + +  FR+++   + F     + +G NG GK+++L+AI
Sbjct: 1  MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43



 Score = 40.3 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           ++  L V +  K   +   S GE+  + +   LA +  ++   G   +L+LDE + +LDE
Sbjct: 774 NKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLA---GEISLLILDEPTPYLDE 830

Query: 329 DKRNALFRIVT---DIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
           ++R  L  I+        Q+ +   D+ + D+  +    + + N 
Sbjct: 831 ERRRKLITIMERYLKKIPQVILVSHDEELKDA-ADHVIRISLENG 874


>gi|212637201|ref|YP_002313726.1| ATPase [Shewanella piezotolerans WP3]
 gi|212558685|gb|ACJ31139.1| ATPase [Shewanella piezotolerans WP3]
          Length = 433

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 27/43 (62%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + I  L ++ FR++    L FD + T+ +  NG GK+++L+A+
Sbjct: 1  MIIDTLKLTNFRSFEDFELQFDPRLTVLIARNGAGKSSVLDAV 43


>gi|124481768|gb|AAI33261.1| Unknown (protein for IMAGE:6927834) [Xenopus laevis]
          Length = 466

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 91/262 (34%), Gaps = 28/262 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + I  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHVKSIIIDGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLTQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKATVSITFDNYDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM + +
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E          +E ++     K+   R   +      IM  ++  +  +
Sbjct: 178 KIAAQKTIEKKEAKLKEIQT-ILEEEITPTIHKLKEERSSYLE--YQKIMREIEHLSRLY 234

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
           +        + K  +S   LKE
Sbjct: 235 VAYQFVCAEETKV-RSAEELKE 255


>gi|67984422|ref|XP_669517.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56483695|emb|CAI03191.1| hypothetical protein PB301085.00.0 [Plasmodium berghei]
          Length = 158

 Score = 59.5 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + I+ + +  F++Y +  +   F  Q     G NG GK+N+L+AI F+         R  
Sbjct: 1   MHIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60

Query: 60  SYADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
              ++  + G          ++         ++   RD +++   +
Sbjct: 61  RLDELIYKQGQAGITKGSVTIKFNNEEKPSPLQEPYRDMKTITITR 106


>gi|169634134|ref|YP_001707870.1| putative chromosome segregation ATPases [Acinetobacter baumannii
           SDF]
 gi|169152926|emb|CAP01967.1| putative chromosome segregation ATPases [Acinetobacter baumannii]
          Length = 1149

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 103/298 (34%), Gaps = 54/298 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLNFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +     +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTCEGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   RIF   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGTINRLVDAKPEEMRIFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM-----------AE 192
             + +   +     R+ D    ++ + + L      +    ++E+Q+           AE
Sbjct: 180 TLQHLEHTEQN-LSRLEDIALELKSQLKTLKRQSEAAVQYKTLESQIRTLKIEILSFQAE 238

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             V++       +N L         + +     L  T  L  +  Q    L++E+ + 
Sbjct: 239 KSVRLQEEYTVQMNELGETFKLVRSELSTIEHDLESTSALFQRLIQQSSPLQQEWQQA 296


>gi|148989270|ref|ZP_01820650.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
          SP6-BS73]
 gi|147925248|gb|EDK76327.1| glucose-6-phosphate 1-dehydrogenase [Streptococcus pneumoniae
          SP6-BS73]
          Length = 106

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1  MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61 YADVTRIGSPS-----FFSTFARVEGMEG 84
            DV   G+ S     + S    ++  +G
Sbjct: 61 MPDVIFAGTESRKPLNYASVVVTLDNHDG 89


>gi|146417278|ref|XP_001484608.1| hypothetical protein PGUG_02337 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1170

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVEELIIDGFKSYATRTVISDWDPQFNAITGLNGSGKSNILDAICFVLGIASMTTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  + IS+  +     S + L +N 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNSDTSKSPIGFETCSKISVTRQIILGGSSKYL-VNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    LN    +   + + + +    
Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148


>gi|325672991|ref|ZP_08152685.1| ATP-dependent endonuclease [Rhodococcus equi ATCC 33707]
 gi|325556244|gb|EGD25912.1| ATP-dependent endonuclease [Rhodococcus equi ATCC 33707]
          Length = 610

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 59/386 (15%), Positives = 117/386 (30%), Gaps = 51/386 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           +K++ ++++ FR      ++ D  H++ VG N VGK+ I EA+   L P R FRR    +
Sbjct: 1   MKVRRISLTNFRGVQRGTVLLD-GHSLLVGRNSVGKSTICEALDLVLGPERLFRRPVVDE 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH---- 119
               G+          E    +    +  E +     R  + +       D   +     
Sbjct: 60  YDFYGARYQEEDGVLPEIRIDVVLTELSPEAQRRFKGRLRRWSAESSDFADTTAEVDIVN 119

Query: 120 ---------LRISW---LVPSMDRIFSGL-SMERRRFLDRMVF-------AIDPRHRRRM 159
                    L + +     P+ D    G       + +D +          + P  R   
Sbjct: 120 LDAIDAEWCLPVVFLGRFDPNEDDFVGGTFFAHPEQAIDELTGESEELGAGLKPFVRDDK 179

Query: 160 I----DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
                 + R  R  NR L+      S   +I    +     +    +  + A    +   
Sbjct: 180 RLCGFLYLRAHRTGNRALSFQRG--SLIDTILRLESRTSGPLWEEALRGVEA----VAVA 233

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA-KKLFDGRKMDSMSRRTLIGPHRSDLI 274
                F HI+  +   +D   + +      +    ++      D +       P      
Sbjct: 234 HDTSGFAHIRSEIRKRVDRFLNLTEDRDAIDMRVSEVTREHLRDVLRLFVSTQPG----- 288

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG-FAPILLLDEISAHLDEDKRNA 333
               +  +     STG   + +  +       I+   G  + I  ++E    L    +  
Sbjct: 289 ----EHGVPFNRLSTGSLNLFVFAM----LTYIAELKGDESVIFAIEEPEIALPPHAQRR 340

Query: 334 LFRIVTDIGSQIFMTGTDKSVFDSLN 359
           L   V     Q  +T     V +  +
Sbjct: 341 LVDFVLHRMGQAIVTSHSPYVIEKFD 366


>gi|268678674|ref|YP_003303105.1| SMC domain protein [Sulfurospirillum deleyianum DSM 6946]
 gi|268616705|gb|ACZ11070.1| SMC domain protein [Sulfurospirillum deleyianum DSM 6946]
          Length = 440

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 56/395 (14%), Positives = 121/395 (30%), Gaps = 62/395 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---------RG 55
           ++I  + I  F+ +  +   F+    + +G NG GK+++L A++    G         R 
Sbjct: 1   MRIDKIEIENFKLFDKVEFSFNEHFNLIIGINGSGKSSLLRALAVALGGWANAYIKDDRN 60

Query: 56  FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            R     +  R           +   ++   +  +     +DR                 
Sbjct: 61  LR-PIEKNEIREIQKDGRFDKTKDTLIKTYGEARVINRYSNDRKANVEWTRRRQENQETS 119

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L+    I +  P+              F        +      +          N +   
Sbjct: 120 LSG--SIQYENPADGT-----------FSTWYSLNFNTLGSDIL----------NYVDKG 156

Query: 176 GYFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-----KLS 227
             FD    +  E     +A+  + I  +     +     +  +    N   I     K  
Sbjct: 157 RTFDLPLIAVYECDRLWLAKNQLNIEASAKAQYSRFDPYVDCFHTGANHEAIGEWLLKHE 216

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           L      +      ++K      L +   +  D    R         +IVD+ DK+I   
Sbjct: 217 LASLQLKEETPVLLSIKNAVRNALENCTDISFDFEEGR---------VIVDFEDKSIPFE 267

Query: 286 HGSTGEQKVVLVGIFLAHARLI-------SNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           H S G++ ++ +   +A    I         +   + ++L+DE+  HL    +  +   +
Sbjct: 268 HLSDGQRTILGLFCDIARRAAILNPHFGGEASENTSGVVLIDELDLHLHPKWQMKIIGDL 327

Query: 339 TDI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371
             +    Q   T     +  S+ E  K + + + +
Sbjct: 328 QKVFPNIQFICTTHSPILLRSI-EKEKIIVLEDGK 361


>gi|196247667|ref|ZP_03146369.1| chromosome segregation protein SMC [Geobacillus sp. G11MC16]
 gi|196212451|gb|EDY07208.1| chromosome segregation protein SMC [Geobacillus sp. G11MC16]
          Length = 1187

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 96/277 (34%), Gaps = 29/277 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L++  F+++A  + + F    T  VG NG GK+NI +AI ++      +  R A 
Sbjct: 1   MFLKRLDVIGFKSFADRVSIDFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSVKSLRGAK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS S            ++  +G   +  +  +   R  R       IN    R
Sbjct: 61  MEDVIFAGSDSRKPLNVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ I S    ERR   +     +  + R++  + +
Sbjct: 121 LKDIVDLFLDSGLGKEAFSIIGQGRVEEILSSKPEERRTIFEEAAGVLKYKLRKKKAETK 180

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQ 217
                 N                 +  Q A +  +    R E+    +  +   I +  +
Sbjct: 181 LAETQDNLQRVNDILHELGQQLEPLRMQ-ASIAKEYLEKREELERFEVALMVHDIEQLHR 239

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
           + +  +  L+     +G+         E + ++L D 
Sbjct: 240 QWSELNEALNEHQQEEGRLAAELQKT-EAHIEQLRDQ 275


>gi|300692579|ref|YP_003753574.1| hypothetical protein RPSI07_2954 [Ralstonia solanacearum PSI07]
 gi|299079639|emb|CBJ52317.2| conserved hypothethical protein, nucleoside triphosphate hydrolase
           domain [Ralstonia solanacearum PSI07]
          Length = 599

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 64/357 (17%), Positives = 115/357 (32%), Gaps = 66/357 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           +K+  ++IS FRN+    +  D  + + VG+N VGK+N+L A+  +   S     R    
Sbjct: 1   MKLSRIHISNFRNFHEADVELD-GNVVIVGENRVGKSNLLYAMRLIFDPSLPDSAR---- 55

Query: 62  ADVTRIGSPSFF----------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-- 109
               ++G   F+          +    VE  E   D+ +  +  D       +++D    
Sbjct: 56  ----QLGQGDFWDGLGESIEDKTITVFVELQEFEDDLDLLAQLTD------FRLDDDPHT 105

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
           +R+  E      +     S D            FL     A   R    +       R  
Sbjct: 106 VRLTYEFRPIPGLGRFPQSDDD---------YEFLCYGGEAETKRFGHEVRR-----RIA 151

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
             LL          S+               R   +  L       V  E+   ++ ++ 
Sbjct: 152 MDLLPALRDAEGDLSTW--------------RRSPLRPLLERAFASVPVEDLEGVRGAVQ 197

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGR---KMDSM----SRRTLIGPHRSDLIVDYCDKAI 282
              +   D       E+  + LF      K D         T +     +L +       
Sbjct: 198 AATEQLGDFPSVRGLEQALRGLFASMSGPKQDIEPSLGFGTTDLTRLFRNLRLLIDGGLR 257

Query: 283 TIAHGSTGEQKVVLVGIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           TI   S G   V  + +     R L+S       +L ++E  AHL    + +++R +
Sbjct: 258 TIGEASLGSANVAFLSLKALELRQLMSENRRDHTLLAIEEPEAHLHPHLQRSVYRHL 314


>gi|138894714|ref|YP_001125167.1| chromosome partition protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266227|gb|ABO66422.1| SMC protein (Chromosome partition protein) [Geobacillus
           thermodenitrificans NG80-2]
          Length = 1187

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 96/277 (34%), Gaps = 29/277 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L++  F+++A  + + F    T  VG NG GK+NI +AI ++      +  R A 
Sbjct: 1   MFLKRLDVIGFKSFADRVSIDFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSVKSLRGAK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS S            ++  +G   +  +  +   R  R       IN    R
Sbjct: 61  MEDVIFAGSDSRKPLNVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ I S    ERR   +     +  + R++  + +
Sbjct: 121 LKDIVDLFLDSGLGKEAFSIIGQGRVEEILSSKPEERRTIFEEAAGVLKYKLRKKKAETK 180

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQ 217
                 N                 +  Q A +  +    R E+    +  +   I +  +
Sbjct: 181 LAETQDNLQRVNDILHELGQQLEPLRMQ-ASIAKEYLEKREELERFEVALMVHDIEQLHR 239

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
           + +  +  L+     +G+         E + ++L D 
Sbjct: 240 QWSELNEALNEHQQEEGRLAAELQKT-EAHIEQLRDQ 275


>gi|89099260|ref|ZP_01172138.1| DNA repair protein (recombination protein N) [Bacillus sp. NRRL
           B-14911]
 gi|89086106|gb|EAR65229.1| DNA repair protein (recombination protein N) [Bacillus sp. NRRL
           B-14911]
          Length = 563

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 70/205 (34%), Gaps = 23/205 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F+   T+  G+ G GK+ I++AI  L  GRG      ++  R
Sbjct: 2   LSELSIKNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLVGGRG-----SSEFVR 56

Query: 67  IGSPSF-FSTFARVEGMEG------------LADISIKLETRDDRSVRCL-QINDV--VI 110
            G          +++G +             + D  + L     R+ + + ++N     I
Sbjct: 57  HGEQKAEIEGLFQIDGQDHPCYKKSREFGIDIEDGMVVLRRDISRTGKSVCRVNGKLVTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + E+   +           +           +F    +      +R     +E+  + 
Sbjct: 117 SALREIGSTIIDIHGQHEHQELMDETLHLSLLDQFGSEEIMPALHEYREVFQSYEQTAKK 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL 193
              L       +     I+ Q+ E+
Sbjct: 177 LKNLSENEQQMAHRLDLIQFQLEEI 201


>gi|261379433|ref|ZP_05984006.1| putative DNA sulfur modification protein DndD [Neisseria subflava
          NJ9703]
 gi|284797883|gb|EFC53230.1| putative DNA sulfur modification protein DndD [Neisseria subflava
          NJ9703]
          Length = 683

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA----QHTIFVG-DNGVGKTNILEAISFL 50
          + IK + +  F++YA     F      ++ I VG +NG GKT +LEAI   
Sbjct: 1  MYIKRIKLKNFKSYAEAEFEFPPPEKGRNLILVGAENGHGKTTLLEAIYLC 51



 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 63/222 (28%), Gaps = 53/222 (23%)

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           + +NR  T+           E  +A+     +    E +  +   + E  QK       +
Sbjct: 426 KEKNRQETKLAELKRRYEQQEDSLAD-----SDRLREELERVQKELAEANQKLGGAQNSI 480

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY--------- 277
             +     +    +  L++     L   +K +       +     DL V           
Sbjct: 481 ERSQTEANRLKTEWETLQQALIDSLPKQQKAERAEAVCRLI---DDLAVQLRRSKLDAFR 537

Query: 278 --------------------------------CDKAITIAHGSTGEQKVVLVGIFLAHAR 305
                                              AI     S GE+K++++ +  A   
Sbjct: 538 KTVSSLHKKIAHDKQIGDIEIGEDGSLSLYSQNGTAIDFQPLSHGEKKILVLTLIAA--- 594

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
            ++  T +    ++D     LD    + L +   ++  Q+ +
Sbjct: 595 -LAEITDYQVPFVVDTPLTSLDTRHCDNLVQYWMNLNRQVII 635


>gi|239624035|ref|ZP_04667066.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522066|gb|EEQ61932.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1186

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I  F+++A+ L   F    T  VG NG GK+N+ +A+ ++      +  R AS
Sbjct: 1   MYLKSIEIQGFKSFANKLLFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGAS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       F      ++  +    I    + +  R  RS      IN    R
Sbjct: 61  MQDVIFAGTEMRKPQGFAYVAITLDNSDHQLSIDYDEVTVSRRLYRSGESEYMINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          +D+I SG   ERR   D
Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFD 162


>gi|14521425|ref|NP_126901.1| chromosome segregation protein [Pyrococcus abyssi GE5]
 gi|18203527|sp|Q9UZC8|RAD50_PYRAB RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|5458643|emb|CAB50131.1| Rad50 purine ntpase [Pyrococcus abyssi GE5]
          Length = 880

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRAS 60
          +KI+ + +  FR++    + F     + +G NG GK+++L+AI  +          R   
Sbjct: 1  MKIEEVKVYNFRSHEETVVRFRKGINLIIGQNGSGKSSLLDAI-LVGLYWSKKLRLRGLK 59

Query: 61 YADVTRIGSPSFFSTFARVEGMEGL 85
            +  RIG         + E  +  
Sbjct: 60 KDEFRRIGGKGGTRIEIKFENDDSK 84



 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           +++ L V Y  K + +   S GE+  + +   LA +  +    G   +L+LDE +  LDE
Sbjct: 772 NKTKLFVVYEGKEVPLTFLSGGERIALGLAFRLALSMYL---VGRIDLLILDEPTPFLDE 828

Query: 329 DKRNALFRIVT---DIGSQIFMTGTDKSVFDS 357
           ++R  L  I+       SQ+ M   D+ + D+
Sbjct: 829 ERRRKLLDIMERHLRRISQVIMVSHDEELKDA 860


>gi|316966287|gb|EFV50883.1| putative RecF/RecN/SMC N domain protein [Trichinella spiralis]
          Length = 1130

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
          + +K + +  F++Y    +   F+       G NG GK+NIL+AI F+         R A
Sbjct: 25 MHLKRIELEGFKSYRQRTVLDNFNPNFNAITGLNGSGKSNILDAICFVLGITNLNHVRAA 84

Query: 60 SYADVT 65
          S  D+ 
Sbjct: 85 SLQDLV 90


>gi|90425846|ref|YP_534216.1| chromosome segregation protein SMC [Rhodopseudomonas palustris
           BisB18]
 gi|90107860|gb|ABD89897.1| condensin subunit Smc [Rhodopseudomonas palustris BisB18]
          Length = 1154

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K+  L +  F+++      + +   T  VG NG GK+N++EA+ +       +    AD
Sbjct: 1   MKLTRLRLHGFKSFVEPTDFLIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRAAD 60

Query: 64  VT--------RIGSPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
           +            S +       ++  +  A  +      +++  R +R +    +IN  
Sbjct: 61  MDAVIFAGSGNRPSRNHAEVVMTIDNTDRTAPAAMNDQEILEVSRRIEREAGSVYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166



 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  T++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1042 GKKPQTLSLLSGGEQALTALSLIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCDL 1096

Query: 338  VTDIGSQIFMTGTDKSVF 355
            + +      MT T ++ F
Sbjct: 1097 LNE------MTSTTETRF 1108


>gi|197336139|ref|YP_002155787.1| RecF/RecN/SMC N domain protein [Vibrio fischeri MJ11]
 gi|197317629|gb|ACH67076.1| RecF/RecN/SMC N domain protein [Vibrio fischeri MJ11]
          Length = 648

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 61/383 (15%), Positives = 119/383 (31%), Gaps = 47/383 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRA 59
           + +  L    FR +     +    +  + VG+NG GKT ++ AI  L      GR    +
Sbjct: 1   MYLSKLKAEGFRCFDKGFSVKLTDELNVIVGENGAGKTAVISAIRQLFQDSESGRYSVTS 60

Query: 60  SY--ADVTRIG-SPSFFSTFARVEGMEGLADIS-IKLETRDDRSVRCLQINDVVIR---V 112
                     G + + FS  A  +G++    ++ +      D ++  LQ  +  IR    
Sbjct: 61  DDFFNPFVAGGKAATSFSICAEFDGLDVKDKVAFLPWVGSSDTALLNLQAENKEIRGRFK 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
                   + S   P +  +   + +   R  +  +         R     +L++  NR 
Sbjct: 121 KVIWGGKSKSSQFDPELLDLVQCIYLPPLRDAESKLSN------GRQSRLSKLLKALNRK 174

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             +          +EA +      +       I   + LI E + K    H     +   
Sbjct: 175 QLKQCRKDDKLHPLEASLKSFNESLATDDKLSIKDANKLITENLTKAIGHHFGQKTSIQF 234

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
               +  F  + E      F     +               +     +       S G  
Sbjct: 235 A---ESDFTKISESLTLMFFPDLSAE------------DQELFRDLSQN------SLGYN 273

Query: 293 KVVLVGIFLAHARLISNTTGFAPI--LLLDEISAHLDEDKRNALFRIV-----TDIGSQI 345
            ++ +   +A   L  +         LL++E  AHL    +  L   +      +   Q+
Sbjct: 274 NLLYIASIMAELTLDEDDEEQPIFKLLLIEEPEAHLHPQLQIRLLTHLKSVAEKNKNVQV 333

Query: 346 FMTGTDKSVFDSLNETAKFMRIS 368
            +T T  +V  S  E    + +S
Sbjct: 334 IVT-THSTVLASSVELESIIHLS 355


>gi|225023576|ref|ZP_03712768.1| hypothetical protein EIKCOROL_00435 [Eikenella corrodens ATCC
          23834]
 gi|224943671|gb|EEG24880.1| hypothetical protein EIKCOROL_00435 [Eikenella corrodens ATCC
          23834]
          Length = 683

 Score = 59.5 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA----QHTIFVG-DNGVGKTNILEAISFL 50
          + IK + +  F++YA     F      ++ I VG +NG GKT +LEAI   
Sbjct: 1  MYIKRIKLKNFKSYAEAEFEFPPPEKGRNLILVGAENGHGKTTLLEAIYLC 51



 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 63/222 (28%), Gaps = 53/222 (23%)

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           + +NR  T+           E  +A+     +    E +  +   + E  QK       +
Sbjct: 426 KEKNRQETKLAELKRRYEQQEDSLAD-----SDRLREELERVQKELAEANQKLGGAQNSI 480

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY--------- 277
             +     +    +  L++     L   +K +       +     DL V           
Sbjct: 481 ERSQTEANRLKTDWETLQQALIDSLPKQQKAERAEAVCRMI---DDLAVQLRRSKLDAFR 537

Query: 278 --------------------------------CDKAITIAHGSTGEQKVVLVGIFLAHAR 305
                                              AI     S GE+K++++ +  A   
Sbjct: 538 KTVSSLHKKIAHDKQIGDIEIGEDGSLSLYSQNGTAINFQPLSHGEKKILVLTLIAA--- 594

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
            ++  T +    ++D     LD    N L +   ++  Q+ +
Sbjct: 595 -LAEITDYQVPFVVDTPLTSLDTRHCNNLVQYWMNLNRQVII 635


>gi|227878859|ref|ZP_03996765.1| chromosome segregation protein Smc [Lactobacillus crispatus JV-V01]
 gi|256843376|ref|ZP_05548864.1| chromosome segregation protein SMC [Lactobacillus crispatus
           125-2-CHN]
 gi|256849802|ref|ZP_05555233.1| chromosome segregation protein Smc [Lactobacillus crispatus
           MV-1A-US]
 gi|262046953|ref|ZP_06019913.1| chromosome segregation protein SMC [Lactobacillus crispatus
           MV-3A-US]
 gi|227861550|gb|EEJ69163.1| chromosome segregation protein Smc [Lactobacillus crispatus JV-V01]
 gi|256614796|gb|EEU19997.1| chromosome segregation protein SMC [Lactobacillus crispatus
           125-2-CHN]
 gi|256713291|gb|EEU28281.1| chromosome segregation protein Smc [Lactobacillus crispatus
           MV-1A-US]
 gi|260572935|gb|EEX29495.1| chromosome segregation protein SMC [Lactobacillus crispatus
           MV-3A-US]
          Length = 1189

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + FD   T  VG NG GK+NI EA+ ++   S  +  R  +
Sbjct: 1   MPLTELVLDGFKSFADKTTIHFDDGITGIVGPNGSGKSNITEAVRWVMGESSAKSLRGTN 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS              F   +         + +  R  RS      IN+  +R
Sbjct: 61  MKDVIFAGSQFRKPLNKAEVTLVFDNKKRELAFNSDQVSITRRILRSGDSEFLINNQQVR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141
           + D     L  S + P+   I S             +RR
Sbjct: 121 MRDVRTLFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158


>gi|164662000|ref|XP_001732122.1| hypothetical protein MGL_0715 [Malassezia globosa CBS 7966]
 gi|159106024|gb|EDP44908.1| hypothetical protein MGL_0715 [Malassezia globosa CBS 7966]
          Length = 1113

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 98/283 (34%), Gaps = 42/283 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I+ +++  F  + +L +    +    +G NG GK+ IL AI+    G+     R +S  D
Sbjct: 110 IERVDMINFMCHRNLSIGLGPRINFIIGHNGSGKSAILTAITIALGGKATTTSRGSSLKD 169

Query: 64  VTRIGSPSF-FSTFARVEGME--------GLADISIKLETRDDRSVRCLQINDVVIRV-- 112
             R GS +       R +G +            I  ++ T    + +    +  ++    
Sbjct: 170 FIREGSSAAEVRVRMRNQGSDAYRPDVYGHAITIERRIHTDGAGTWKIKNADGKIVSTKR 229

Query: 113 --VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-------RMVFAIDPRHRRRMIDFE 163
             +D +  +  I    P    I S  +   R+FL           F    +  +   ++E
Sbjct: 230 EELDAICDYANIQVDNP--MNILSQDAA--RQFLGSSQPEDKYSFFLRGTQLTQLAQEYE 285

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---GVKINIARVEM--INALSSLIMEYVQK 218
            +     R+             +E +  E      +I  ARVE   ++AL   ++ + Q 
Sbjct: 286 LIQTNVQRMKRAIRMTEDVLPDLEREAREANDKWHQIEQARVEQEKLDALKEELV-WSQV 344

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                 + +L   LD    +            L   R+ DS+ 
Sbjct: 345 IAKEKERAALESKLDHAHRK---------HAALEKRREDDSLR 378


>gi|45358904|ref|NP_988461.1| SMC domain-containing protein [Methanococcus maripaludis S2]
 gi|49036441|sp|P62134|RAD50_METMP RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|45047770|emb|CAF30897.1| DNA double-strand break repair rad50 ATPase [Methanococcus
           maripaludis S2]
          Length = 993

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 102/274 (37%), Gaps = 48/274 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRASY 61
           + IK + +  FR++ +  + F    T  +G NG GK++I +A++F      G  FR    
Sbjct: 1   MIIKNIKMENFRSHRNTSINFSKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFR---I 57

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--------VIRVV 113
            ++ + G+ SF      +E         +K +    ++   L +N          + + +
Sbjct: 58  ENLMQQGAASF---SVELEFEMMGNTYLVKRKRFQHKTDDKLYVNGKLNAESASEINKKI 114

Query: 114 DELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           +E+ +     +          +  +      +R+  + +++          +  +E+   
Sbjct: 115 EEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLG---------IEKYEKA-S 164

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            +  ++ + Y        +E ++ +          E++  L  L  E  + E      L 
Sbjct: 165 EKMNIVKKSY--EETLLKLEGELTQE--------PEILENLEKLKNEVSESEILKEEILK 214

Query: 228 LTGFLDG---KFDQSFCALKEEYAK--KLFDGRK 256
               L+    + +     ++E++A+  +L +  K
Sbjct: 215 KYENLEKLKLEKNSEILQMEEKFAENNQLKENLK 248



 Score = 38.3 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           + D  +      +    G  GEQ  V + + L    +          ++LDE +A+LDED
Sbjct: 890 KDDYSLIVDGLPVETLSG--GEQIAVSLALRLG---ISKAVCNNIECIILDEPTAYLDED 944

Query: 330 KRNALFRI---VTDIGSQIFMTGTDKSVFDSLNET 361
           +R  L  I   +  I     +T       + + + 
Sbjct: 945 RRKNLLNIFKNIKTINQMAIIT--HHQELEQIADN 977


>gi|269102577|ref|ZP_06155274.1| ATP binding protein [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268162475|gb|EEZ40971.1| ATP binding protein [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 443

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 52/388 (13%), Positives = 124/388 (31%), Gaps = 45/388 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASY 61
           +KI  +N+  F+   +L L    D +   FVG+NG  K+++L A+   L    G    S 
Sbjct: 1   MKISKINVKNFKKIRNLDLDIPADNRVICFVGENGANKSSLLSALYANLRQTSGVTSPSD 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                 G   +      V       +    L      +   ++ +  ++  +++L++  +
Sbjct: 61  ------GQDRYVDNLNHVSTSVSADERFSLLSLSLSENDAVIKSDRAIVPSLEDLSEENK 114

Query: 122 ISW------LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
                          +   G S  R   LD         +   ++    ++         
Sbjct: 115 QLLRTTFNIFYSEDIKFLLGQSNFRN--LD--------SYNPDLVRQNVVLFRPFNRTET 164

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
             ++    S     +   G  I   R          +   ++K N   + + L   +D  
Sbjct: 165 PTWERESLSE-NQDVVATGHNIIGKR-----KFPMRVASGIEKTNSYFLDVVLDHLIDSS 218

Query: 236 FDQSFC-ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +     +L   + + L     ++  +  T +     +  + + +     +  S G+   
Sbjct: 219 NNSDTTYSLFNNFREILS---TIEPAANGTFVVQEFPNKCISFPNVPELASL-SAGQSDW 274

Query: 295 VLVGI-FLAHARLISN------TTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQI 345
            +  I  L   + ++             I+ +DE+  +     +  +     D     Q 
Sbjct: 275 FVTAINILIQMKELARNIAPELIRNVGGIVFIDEMDMNYHPSFQERVLPWFLDFFPNIQF 334

Query: 346 FMTGTDKSVFDSLNETAKFMRISNHQAL 373
            +T     +  SL E +  +++ + + L
Sbjct: 335 IITTHSPYLIRSLGENSLVVKLPSGEVL 362


>gi|86748191|ref|YP_484687.1| chromosome segregation protein SMC [Rhodopseudomonas palustris
           HaA2]
 gi|86571219|gb|ABD05776.1| condensin subunit Smc [Rhodopseudomonas palustris HaA2]
          Length = 1154

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K+  L +  F+++      + +   T  VG NG GK+N++EA+ +       +     D
Sbjct: 1   MKLTRLRLHGFKSFVEPTDFMIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRATD 60

Query: 64  VT--------RIGSPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
           +            S +       ++  +  A  +      +++  R +R +    +IN  
Sbjct: 61  MDAVIFAGSGNRPSRNHAEVVMSIDNTDRTAPAALNDSEVLEISRRIEREAGSQYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 121 EVRARDVQLLFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166



 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 26/199 (13%)

Query: 160  IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             D E+L R R RL           + +E Q   L  + +   VE I  L + I   + KE
Sbjct: 933  ADLEKLRRDRERLGAVNLRAEEELNEVETQHGSLAAERDDL-VEAIKKLRTGIQS-LNKE 990

Query: 220  NFPHIKLSLTGFLDGKFDQSFCAL---KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
                +  S    ++G F + F  L    E   K +     +++        P +      
Sbjct: 991  ARERLLASFE-VVNGHFKRLFTTLFGGGEAELKLIESDDPLEAGLEIIAKPPGK------ 1043

Query: 277  YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
               K  +++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        
Sbjct: 1044 ---KPQSLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCD 1095

Query: 337  IVTDIGSQIFMTGTDKSVF 355
            ++ +      MT T ++ F
Sbjct: 1096 LLNE------MTATTETRF 1108


>gi|329113341|ref|ZP_08242122.1| Hypothetical protein APO_0105 [Acetobacter pomorum DM001]
 gi|326697166|gb|EGE48826.1| Hypothetical protein APO_0105 [Acetobacter pomorum DM001]
          Length = 1515

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 107/334 (32%), Gaps = 52/334 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++   L I  F+++A  + +      T  VG NG GK+N++EA+ ++   S  R  R   
Sbjct: 3   VRFVRLRIVGFKSFADPVTVEILPGLTGIVGPNGCGKSNVVEALRWVMGESSARSLRGGE 62

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             D+   G     + S       +EG +G           +++  R +R S    +IN  
Sbjct: 63  MDDLIFAGTTGRPARSLAEVTVTLEGTKGFGPAAFADMDELQITRRAERGSGSDYRINGR 122

Query: 109 VIRVVD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLDR---MVFAIDPRHRR 157
            +R  D      +L    R S +V    +  +      ERR  L+    +      RH  
Sbjct: 123 PVRARDVQTLFADLASGARSSAMVSQGRVAMLVGARPEERRTILEEAAGITGLHARRHEA 182

Query: 158 RM------IDFERLMRGRNRL------LTEGYFDSSWCSSIEAQMAELGVK---INIARV 202
            +       +  R    R +L      L E   D+S    + A + E   +   +  AR 
Sbjct: 183 ELKLRATESNLTRAEDRRQQLSDRLDGLAEQSRDASRYRELSAALREAETELLAVLHARA 242

Query: 203 EMINALSSLIMEYVQKENFPHIKLSLTGFL----------DGKFDQSFCALKEEYAKKLF 252
            +    +       +K    H + + +  +            +          E  + L 
Sbjct: 243 RLAVERAIDNAARARKALTEHEEAAESAVVAEFEANKVLPGAREKADAARTALERCRVLA 302

Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           +G   +     T        L     D       
Sbjct: 303 EGVAREEERAATQANDAAERLKQHEADADAAKTR 336


>gi|269215481|ref|ZP_06159335.1| putative RecF/RecN/SMC N domain protein [Slackia exigua ATCC
           700122]
 gi|269130968|gb|EEZ62043.1| putative RecF/RecN/SMC N domain protein [Slackia exigua ATCC
           700122]
          Length = 1176

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 85/241 (35%), Gaps = 41/241 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L +  F+++A  ++L  +   T  VG NG GK+NI +A+ ++   R     R  +
Sbjct: 1   MYLKSLTLKGFKSFADRIQLTLEPGMTAVVGPNGSGKSNISDAVLWVLGERNPKHLRGQA 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADI-------SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS +  S   A VE +   +D         + L  R  RS      IN +V R
Sbjct: 61  MEDVIFAGSTARRSVSVAEVELVLDNSDGMLPVDFDEVSLTRRIFRSGESEYLINGIVAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            +D         L           ++D + +G   +RR  ++                  
Sbjct: 121 RMDFMDILHDTGLGTGTHTIIGQGNLDAVLTGKPEDRRALIEEAAG-------------- 166

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
            +++ + R            +S++  +A +   +       +  L+         E    
Sbjct: 167 -ILKHKQRKERSARK----LASMDEHLARV-KDVAAEVERQLKPLARKASRQQAYEALST 220

Query: 224 I 224
            
Sbjct: 221 E 221


>gi|258645381|ref|ZP_05732850.1| DNA repair protein RecN [Dialister invisus DSM 15470]
 gi|260402730|gb|EEW96277.1| DNA repair protein RecN [Dialister invisus DSM 15470]
          Length = 554

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 63/379 (16%), Positives = 126/379 (33%), Gaps = 42/379 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I  F       +      T+F G+ G GK+ +++A++ L  GR  R     D+ R
Sbjct: 2   LQSLHIVNFAIIEDTIIELTDGATVFTGETGAGKSILIDALAIL-LGRRART----DLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADI-----------SIKLETRDDRSVRCL-QINDV--VIRV 112
            G+  FF         + +  I            I +  + +RS R +  IN     ++ 
Sbjct: 57  TGAE-FFKVEGVFSADDEIVSILSSFGFDAADSQIIITRKLNRSGRGICTINGDFCTVKQ 115

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR---MVFAIDPRHRRRMIDFERLMRGR 169
           ++ + + L    L    D I    S   RR +DR    +  +   +     +++   +  
Sbjct: 116 LEFIGRKL--VRLHEQNDAIELLSSEYCRRIIDRFTPEISTLRDEYDHIYQEWKETKKNL 173

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVK-INIARVEMINALSSLIMEYVQKENFPHIKLSL 228
                    +      +E ++ ++    I     E I+   S++  Y +        LS 
Sbjct: 174 EEFHAHRQENERRIDILEWELEQIRTANIINGEDEEIDRRLSILQNYEKIIYSVKAALSA 233

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDG--RKMDSMSRRTLIGPH--RSDLIVDYCDKAITI 284
                G  D    A K       +D   ++ D   R  L         L         + 
Sbjct: 234 LSDEGGARDLLASASKAVSTASRYDKEMKETDEELRTVLYSLEDIEGKLDTYISAADFSD 293

Query: 285 AHGSTGEQKV-VLVGIF------LAHARLISNTTGFAPILLLDEISAHLDEDKR-----N 332
              S  + +  +L+G+       LA               L + I  + +  ++      
Sbjct: 294 EELSELQSRSNILIGLKRKFGPTLADVIHYEENAEKECTSLKNLIYENKEMQEKYKLLTE 353

Query: 333 ALFRIVTDIGSQIFMTGTD 351
           A+ +    +  Q  +TG +
Sbjct: 354 AVMKKAEALNRQRILTGCE 372


>gi|256962366|ref|ZP_05566537.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|293385316|ref|ZP_06631129.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|293386572|ref|ZP_06631155.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|312908106|ref|ZP_07767086.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|312979001|ref|ZP_07790721.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|256952862|gb|EEU69494.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|291077422|gb|EFE14786.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|291083977|gb|EFE20940.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|310625917|gb|EFQ09200.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|311288180|gb|EFQ66736.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
          Length = 700

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 68/413 (16%), Positives = 133/413 (32%), Gaps = 65/413 (15%)

Query: 5   IKIKFLNISEFR--NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + I  L I  FR  NY + +++ +    + +G N  GKT I++A+  L      ++ S  
Sbjct: 1   MFISELEIENFRGFNYKT-KILLNNSINVLIGQNNSGKTTIIKAMELLFSDGSKKKLSVG 59

Query: 63  D---VTRIGSPSF----FSTFARV---EGMEGLADISIKLETRDDR-----SVRCLQIND 107
           D      I             A++   E  E  +D  I + T   +       R      
Sbjct: 60  DFYKNITIDDIKALPPKIVISAKLTESEDDEEYSDDLITVSTWLTKIEKPYEARITYEYY 119

Query: 108 VVIRVVDELNKHLRISW--------------LVPSM-DRIFSGLSMERRRFLDRMVFAID 152
           +  + +DE  K +                   +P     I  G    +       +   D
Sbjct: 120 LPEKYIDEYKKIMNTVNSNEIEDYWNEIEHSFIPKFKYHILIGDPKYKNTIDAESLKTFD 179

Query: 153 PRHRRRMIDFERLM-RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR---VEMINAL 208
            +  + + D ER M RG N LL E             Q       +   R    E     
Sbjct: 180 FQFLKAVRDVERDMYRGNNSLLKEVIDFFIDYDVKNNQDLTSDEMLTQIRKNKREFSKKA 239

Query: 209 SSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEYAK-KLFDGRKMDSMSRRTLI 266
           S LI +  ++ ++     L         F++     + +    +L+   K+   S   + 
Sbjct: 240 SGLINDLQKRMKSGKKEMLKYATQTGATFEKLTPTFEGKILDTELYSALKLIVESETGIK 299

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR------LISNTTGFAPILLLD 320
            P   +  + Y +              ++ + + LA  +                IL ++
Sbjct: 300 IPAAQN-GLGYNN--------------LIYISLLLAKMQKNASGTYFGVNAKNYSILAIE 344

Query: 321 EISAHLDEDKRNALFRIV----TDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
           E  AHL    +  L + +         Q+F+T    ++  +++  +  + + N
Sbjct: 345 EPEAHLHPTMQYKLLKFLNLNSEKEVRQVFVTSHSPNITAAVDLNSLIV-VEN 396


>gi|225374437|ref|ZP_03751658.1| hypothetical protein ROSEINA2194_00052 [Roseburia inulinivorans DSM
           16841]
 gi|225213675|gb|EEG96029.1| hypothetical protein ROSEINA2194_00052 [Roseburia inulinivorans DSM
           16841]
          Length = 921

 Score = 59.1 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  R AS
Sbjct: 1   MYLKSIEVQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+      ++  +    I  +  T   R  R       IN    R
Sbjct: 61  MQDVIFAGTENRKPLSYAYVAITMDNSDHQLAIDFEEVTVSRRVYRSGESEYLINGSPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          ++RI +G   ERR   D
Sbjct: 121 LKDVTELFYDTGIGKEGYSIIGQGQIERILNGKPEERRELFD 162


>gi|320093509|ref|ZP_08025406.1| SMC domain protein [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979554|gb|EFW11019.1| SMC domain protein [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 404

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRAS 60
          +K+  ++++ +RN+  +    D++    VG N  GKTN+L A+ FL     RG R A+
Sbjct: 1  MKLTHVSLTNWRNFGHIEFDLDSRL-FVVGPNSSGKTNLLGALRFLGDIARRGLRAAN 57


>gi|311069025|ref|YP_003973948.1| double strand breaks DNA repair and genetic recombination protein
           [Bacillus atrophaeus 1942]
 gi|310869542|gb|ADP33017.1| double strand breaks DNA repair and genetic recombination protein
           [Bacillus atrophaeus 1942]
          Length = 576

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 32/209 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F+   T+  G+ G GK+ I++AIS L  GRG      ++  R
Sbjct: 2   LAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRG-----SSEFVR 56

Query: 67  IGS-----------PSFFSTF--ARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--- 110
            G             S    F     +G++   D+ +     +       ++N  ++   
Sbjct: 57  YGETKAELEGLFLLESGHPVFEVCHEQGIDVSDDMIVLRRDINSNGKSVCRVNGKLVTIA 116

Query: 111 ------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                 R++ +++       L+     +         +F      +    +R     + +
Sbjct: 117 ALREIGRLLLDIHGQHDNQLLMEDDKHL-----QLLDKFAGEEADSALHAYREGYQRYMK 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +++   +L       +     I+ Q+ E+
Sbjct: 172 VLKKLRQLSESEQEMAHRLDLIQFQLDEI 200


>gi|296394247|ref|YP_003659131.1| chromosome segregation protein SMC [Segniliparus rotundus DSM
           44985]
 gi|296181394|gb|ADG98300.1| chromosome segregation protein SMC [Segniliparus rotundus DSM
           44985]
          Length = 1171

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + ++ L +  F+++A+   LVF+   T  VG NG GK+NI +A+S++      +  R A 
Sbjct: 1   MHLRSLTLKGFKSFAAPTTLVFEPGVTAVVGQNGSGKSNIADALSWVMGEQGAKSLRGAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+              ++  +G   I         R  R       IN    R
Sbjct: 61  MDDVIFAGTSKRPALGRAEVTLVIDNTDGALPIDYTEVAITRRMYRDGGGEYLINGDSCR 120

Query: 112 VVD 114
           ++D
Sbjct: 121 LMD 123


>gi|316935990|ref|YP_004110972.1| chromosome segregation protein SMC [Rhodopseudomonas palustris
           DX-1]
 gi|315603704|gb|ADU46239.1| chromosome segregation protein SMC [Rhodopseudomonas palustris
           DX-1]
          Length = 1154

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K+  L +  F+++      + +   T  VG NG GK+N++EA+ +       +     D
Sbjct: 1   MKLTRLRLHGFKSFVEPTDFMIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRATD 60

Query: 64  VT--------RIGSPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
           +            + +       ++  +  A        ++ +  R +R +    +IN  
Sbjct: 61  MDAVIFAGSGNRPARNHAEVVMSIDNSDRTAPAALNDSDTLDISRRIEREAGSQYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 121 EVRARDVQLLFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  +++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1042 GKKPQSLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCDL 1096

Query: 338  VTDIG 342
            +  + 
Sbjct: 1097 LQQMR 1101


>gi|241895654|ref|ZP_04782950.1| SMC structural maintenance of chromosomes partitioning protein
           [Weissella paramesenteroides ATCC 33313]
 gi|241871021|gb|EER74772.1| SMC structural maintenance of chromosomes partitioning protein
           [Weissella paramesenteroides ATCC 33313]
          Length = 1184

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 29/168 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +K+K L I+ F+++    ++ F    T  VG NG GK+NI+EAI ++      +G R   
Sbjct: 1   MKLKTLEITGFKSFAERTKIEFMPGITGVVGPNGSGKSNIIEAIRWVMGEQSAKGLRGDK 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            ADV   G+              F +T   +        I+  L    D +    QIN V
Sbjct: 61  MADVIFGGTSERAPLNRAEVAITFDNTDHYLNSDYSEITITRTLYRNGDSN---YQINGV 117

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRM 147
            +R + ++++    S L      I S            +ERR  ++ +
Sbjct: 118 HVR-LKDIHELFMDSGLGRESFSIISQGRVESIFSAKPVERRSIIEDV 164


>gi|15606061|ref|NP_213438.1| chromosome assembly protein [Aquifex aeolicus VF5]
 gi|2983243|gb|AAC06839.1| chromosome assembly protein homolog [Aquifex aeolicus VF5]
          Length = 1156

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 19/164 (11%)

Query: 1   MTNRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRG 55
           M  R  I+ + +  F++Y      +         VG NG GK+NI +AISF   LS  + 
Sbjct: 1   MEKRAYIEKIVVEGFKSYGTKRKEIPLGEGFIAVVGPNGAGKSNIGDAISFALGLSSAKA 60

Query: 56  FRRASYADVT--RIGSP---SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVV 109
            R  + + +   + G     ++     +  G   + D  + +  +  +  R   +IN  V
Sbjct: 61  LRAKNLSYLIFSKNGQKADHAYVEVHFKNLGAFPVEDEEVVISRKVSKDGRSIFKINGQV 120

Query: 110 IRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           +R  D         + +          + +      +ERR+ ++
Sbjct: 121 VRERDLKDFLAKAGIYETAYNVVYQGDIVKFLKMTPVERRKIIE 164


>gi|17535279|ref|NP_496331.1| MItosis and X associated family member (mix-1) [Caenorhabditis
          elegans]
 gi|8488992|sp|Q09591|MIX1_CAEEL RecName: Full=Mitotic chromosome and X-chromosome-associated
          protein mix-1; AltName: Full=Lethal protein 29;
          AltName: Full=Structural maintenance of chromosomes
          protein 2
 gi|2088621|gb|AAC47834.1| mitotic chromosome and X-chromosome associated MIX-1 protein
          [Caenorhabditis elegans]
 gi|3878717|emb|CAA87054.1| C. elegans protein M106.1, confirmed by transcript evidence
          [Caenorhabditis elegans]
 gi|3878912|emb|CAA86786.1| C. elegans protein M106.1, confirmed by transcript evidence
          [Caenorhabditis elegans]
 gi|3880446|emb|CAA20330.1| C. elegans protein M106.1, confirmed by transcript evidence
          [Caenorhabditis elegans]
          Length = 1244

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRA 59
          + IK +++  F++Y      L F        G NG GK+NIL++I F+         R  
Sbjct: 1  MHIKSIHLDGFKSYQKHTDILDFSPTFNAITGYNGSGKSNILDSICFIMGINKLDNIRAK 60

Query: 60 SYADVTRIGSPSFFS 74
          S  ++   G      
Sbjct: 61 SMHELISHGGTKAIV 75


>gi|329117065|ref|ZP_08245782.1| chromosome segregation protein SMC [Streptococcus parauberis NCFD
           2020]
 gi|326907470|gb|EGE54384.1| chromosome segregation protein SMC [Streptococcus parauberis NCFD
           2020]
          Length = 1181

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + ++ + +  F+++A   ++ FD   T  VG NG GK+N+ E++ +    S  +  R   
Sbjct: 1   MFLRRIEMQGFKSFADKTKIEFDKGVTAVVGPNGSGKSNVTESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   G+ S  +  FA V  +   +D  IK   ++ R  R +  N 
Sbjct: 61  MPDIIFAGTESRNALNFAEVAVILDNSDQFIKDANKEIRVERHIYRNG 108


>gi|160938005|ref|ZP_02085362.1| hypothetical protein CLOBOL_02898 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438999|gb|EDP16754.1| hypothetical protein CLOBOL_02898 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1186

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I  F+++A+ L   F    T  VG NG GK+N+ +A+ ++      +  R AS
Sbjct: 1   MYLKSIEIQGFKSFANKLVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGAS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+       F      ++  +    I     T   R  R       IN    R
Sbjct: 61  MQDVIFAGTEMRKPQGFAYVAITLDNSDHQLAIDYDQVTVSRRLYRSGESEYMINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          +DRI SG   ERR   D
Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDRILSGKPEERRELFD 162


>gi|150402511|ref|YP_001329805.1| SMC domain-containing protein [Methanococcus maripaludis C7]
 gi|150033541|gb|ABR65654.1| SMC domain protein [Methanococcus maripaludis C7]
          Length = 993

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 99/271 (36%), Gaps = 43/271 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRASY 61
           + IK + +  FR++ +  + F+   T  +G NG GK++I +A++F      G  FR    
Sbjct: 1   MIIKTIKMENFRSHRNTSINFNKGITSIIGQNGSGKSSIFQAMNFALFAPRGSNFR---I 57

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--------VIRVV 113
            ++ + G+ SF      +E         +K +   +++   L +N          + + +
Sbjct: 58  ENLMQQGAASF---SVELEFEMMGNTYLVKRKRFQNKTDDKLYVNGKLNAESASEINKKI 114

Query: 114 DELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           +E+ +     +          +  +      +R+  + +++          +  +E+   
Sbjct: 115 EEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLG---------IEKYEKA-A 164

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            +  ++ + Y        +E ++ +          E++  L  L  E  + E      L 
Sbjct: 165 EKMNIVKKSY--EEMLFKLEGELTQE--------PEILENLEKLKNEVSESEVLKEEVLK 214

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
             G L+    +    L +   K   + R  +
Sbjct: 215 KYGNLETVKLEKNLELTQMEEKFTENNRLKE 245



 Score = 37.6 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           + D  +      +    G  GEQ  V + + L    +          ++LDE +A+LDED
Sbjct: 890 KDDYSLIVDGLPVETLSG--GEQIAVSLALRLG---ISKAVCNNIECIILDEPTAYLDED 944

Query: 330 KRNALFRIVTDIGS 343
           +R  L  I  +I +
Sbjct: 945 RRKNLLNIFKNIKT 958


>gi|307352886|ref|YP_003893937.1| chromosome segregation protein SMC [Methanoplanus petrolearius
          DSM 11571]
 gi|307156119|gb|ADN35499.1| chromosome segregation protein SMC [Methanoplanus petrolearius
          DSM 11571]
          Length = 1146

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  L I  F+++    ++ F    T+  G NG GK+NI+++I F   LS  RG R   
Sbjct: 1  MYITELEIDNFKSFAKKTKIPFYEGFTVISGPNGSGKSNIIDSILFCLALSSARGLRAEK 60

Query: 61 YADVTRIGS 69
            D+  + S
Sbjct: 61 LTDLINLNS 69


>gi|260583708|ref|ZP_05851456.1| cell division protein Smc [Granulicatella elegans ATCC 700633]
 gi|260158334|gb|EEW93402.1| cell division protein Smc [Granulicatella elegans ATCC 700633]
          Length = 1186

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/192 (20%), Positives = 72/192 (37%), Gaps = 23/192 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           ++++ + +S F+++A    + FD   T  VG NG GK+N+ EAI   L     +  R   
Sbjct: 1   MQLEKIEMSGFKSFADKTVIEFDKGVTAVVGPNGSGKSNLSEAIKWVLGEQSAKSLRGKK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSVRC-LQINDVVIR 111
             DV   GS      +       +   +G   I    + L  R +R+      IN    R
Sbjct: 61  MDDVIFAGSQTRKPVNIAEVNLHINNEDGKLAIEHSQVVLTRRLNRNGDSDFFINKKACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +++IF+    +RR  ++     +   ++ R    +
Sbjct: 121 LKDITSLMMDSGLGKDSFALISQGKVEQIFNDKPEDRRMIIEEAAGVLK--YKDRKTQAQ 178

Query: 164 RLMRGRNRLLTE 175
           R +      L  
Sbjct: 179 RKLDQTQEHLNR 190


>gi|254464932|ref|ZP_05078343.1| chromosome segregation protein SMC [Rhodobacterales bacterium Y4I]
 gi|206685840|gb|EDZ46322.1| chromosome segregation protein SMC [Rhodobacterales bacterium Y4I]
          Length = 1151

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 110/294 (37%), Gaps = 42/294 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+ ++   +  +  R   
Sbjct: 1   MRFSKLRLNGFKSFVDPTELVIADGLTGVVGPNGCGKSNLLEALRWVMGETRAKAMRGGG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G     + +F     +++  E LA         +++  R  R V    + N  
Sbjct: 61  MEDVIFAGTTSRPARNFAEVSLQIDNSERLAPSGFNDSDILEIVRRITRDVGSAYKSNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQIAELINAKPKARRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-RVEMIN---ALSSLIMEYV 216
             E  ++ +N        D      +  Q+A+L  +   A R   I     LS  ++ Y 
Sbjct: 177 RHEAELKLKNTEANLLRVDDV-IEQLAGQLAQLAKQARQAQRYREIGEKLRLSEGMLLYR 235

Query: 217 QKENFPHIKLSLTGFLDGKFDQ---------SFCALKEEYAKKLFDGRKMDSMS 261
           +       +L+    L  + +Q         +  A +  + +KL   R+ ++++
Sbjct: 236 RWRESDEARLASEDELRARVEQVSKAEVLVRAAAAQRGTFEEKLPPLREEEAIA 289


>gi|332020697|gb|EGI61102.1| Structural maintenance of chromosomes protein 6 [Acromyrmex
           echinatior]
          Length = 1222

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 93/300 (31%), Gaps = 47/300 (15%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62
           K+K + +  F  + +L +  +      VG NG GK+ IL A++     R     R  S  
Sbjct: 42  KVKKIRLHNFMCHDALEITLNENVNFIVGQNGSGKSAILTALTVGLGARANVTSRGTSVK 101

Query: 63  DVTRIGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRSVRCLQINDVVIRV--- 112
           +  + G  S       V   +           I++        S +       +I     
Sbjct: 102 EFVKKGRNSAIIEITLVNKGDTAYKPEVYGNIITVLRNIGTTSSYKIKNWRGEIISTKRD 161

Query: 113 -VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRH------ 155
            +D +   + I    P        S   + +    E+        ++ +I+  +      
Sbjct: 162 ELDNIISMMNIQIDNPISVLNQDVSRTFLVTSKPEEKYSLFMKATLLDSIEINYKEALNI 221

Query: 156 ----RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARV 202
                 ++  +   +    + + +          ++   AEL            I     
Sbjct: 222 CEEEYDKLQQYNATLSQEKKQIEKLKESIHRLEEMDESRAELSNLEMELHWATAIVE--E 279

Query: 203 EMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             +N + + +  +  K     +I+LS T   D   D++   +K++  +   +    +   
Sbjct: 280 TKLNKIQNTVKMHEDKLKELQNIELS-TEKKDEGIDKNIEEIKQKIQQAEQEAIDSNEAY 338


>gi|301614517|ref|XP_002936738.1| PREDICTED: structural maintenance of chromosomes protein 2-like
           [Xenopus (Silurana) tropicalis]
          Length = 1119

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 91/262 (34%), Gaps = 28/262 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + I  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHVKSIIIDGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLTQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKATVSITFDNYDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM + +
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E          +E ++     K+   R   +      IM  ++  +  +
Sbjct: 178 KIAAQKTIEKKEAKLKEIQT-ILEEEITPTIHKLKEERSSYLE--YQKIMREIEHLSRLY 234

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
           I        + K  +S   LKE
Sbjct: 235 IAYQFVCAEETKV-RSAEELKE 255


>gi|167383572|ref|XP_001736584.1| structural maintenance of chromosomes protein [Entamoeba dispar
           SAW760]
 gi|165900946|gb|EDR27157.1| structural maintenance of chromosomes protein, putative [Entamoeba
           dispar SAW760]
          Length = 1023

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ + +  F  +  L L    Q    VG+NG GK+ IL A++     +     R    +D
Sbjct: 9   IERIELENFMCHKHLILELSPQVNFIVGENGSGKSAILVALAICFGAKAQFTNRGKRASD 68

Query: 64  VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
           V + G        + R  G   L           +R +     N
Sbjct: 69  VIKTGESYCKIIVYLRNRGENSLNHDKYGDTVIIERKITKEGGN 112


>gi|84489889|ref|YP_448121.1| DNA double-strand break repair protein Rad50 [Methanosphaera
          stadtmanae DSM 3091]
 gi|84373208|gb|ABC57478.1| DNA double-strand break repair protein Rad50 [Methanosphaera
          stadtmanae DSM 3091]
          Length = 902

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 31/45 (68%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + I  + ++ F+++ S ++ F    ++ +G+NG GK++ILEAIS+
Sbjct: 1  MIINNIELTNFKSHKSTKIEFKKGISLILGENGAGKSSILEAISY 45



 Score = 39.5 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           +LIV    + I +   S GE+ V+ + + L  A+ IS       +L+LDE + HLD ++R
Sbjct: 799 NLIVQTRQEQIDLNMLSGGEKIVIALALRLGIAKAISK--NKMELLVLDEPTIHLDSERR 856

Query: 332 NALFRIVTDIGS 343
             L  I+  I  
Sbjct: 857 TELIDIIRKINV 868


>gi|289616556|emb|CBI56721.1| putative SMC5 protein [Sordaria macrospora]
          Length = 1140

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 12/127 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RRA 59
            I  + + +F  Y            + +G NG GK++++ AI     G GF      R  
Sbjct: 71  AIVRVKLKDFVTYNEAEFFLGPSLNMVIGPNGTGKSSLVCAICL---GLGFPSNVLGRAT 127

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELN 117
           +Y +  + G     +    ++G  G  +  + L    + + R   IN      + V  L 
Sbjct: 128 AYGEYVKHGQDEA-TIEVELQGESGEDNYVVGLLITRETNSRDFTINGRKATHKEVHRLM 186

Query: 118 KHLRISW 124
             LRI  
Sbjct: 187 SRLRIQI 193


>gi|310780414|ref|YP_003968746.1| SMC domain protein [Ilyobacter polytropus DSM 2926]
 gi|309749737|gb|ADO84398.1| SMC domain protein [Ilyobacter polytropus DSM 2926]
          Length = 605

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 53/386 (13%), Positives = 133/386 (34%), Gaps = 52/386 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR------ 58
           +K+K + +  FR Y  + +  +    + VG N VGK+ I+EA+         +       
Sbjct: 1   MKLKKIILKNFRGYKDIEIPIEKNFNVIVGKNDVGKSTIMEAMEIFFNSNSIKADLGDYN 60

Query: 59  --ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVD 114
             AS   +T IG   F    +    ++     ++  E   +        +I D     + 
Sbjct: 61  VLASEKSMT-IGC-CFEVKSSDKIIIDTTNPTTLDKEFLLNNKGLLEIHKIWDCSKSKLT 118

Query: 115 ELNKHLRISWLVPSMDR--IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
             +  + +    P+     + +  + E ++ ++    +I         + + + + +N  
Sbjct: 119 ASSLKIYLKVFYPNSIELPLINLKNSELKKLIENSKSSI--------PNIDTINKTKNAE 170

Query: 173 LTEGYFDSSWCS--SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
           L + Y+++       ++ ++ +L  +      E I+    L   +            +  
Sbjct: 171 LRKAYYENCLDKETELDNKLIDLNKEDGKKLWESISQNLPLYFLFQSDRQNKDSDNEVQN 230

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKM---------------DSMSR---RTLIGPHRSD 272
            L  +  +    ++E+  +   + ++                D       +T++     D
Sbjct: 231 PLKIETKKVLSEIEEKLNEIKKEVKERVETISNETINYLKEFDKEIASDLKTILNLKAWD 290

Query: 273 LIVDY----CDKAITIAHGSTGEQKVVLVGIFLAHAR-LISNTTGFAPILLLDEISAHLD 327
            + ++     ++      GS G ++++L+  F+A A     N      I   +E      
Sbjct: 291 SLFNFNLIDNNEIPLNKRGS-GVRRLILLSYFMAEAERATKNQNNNDVIYAFEEPENSQH 349

Query: 328 EDKRNALFRIVTDIGS----QIFMTG 349
            + +  L     ++ S    QI +T 
Sbjct: 350 PNYQKMLVESFINLSSTENYQILVTT 375


>gi|308050129|ref|YP_003913695.1| chromosome segregation protein SMC [Ferrimonas balearica DSM 9799]
 gi|307632319|gb|ADN76621.1| chromosome segregation protein SMC [Ferrimonas balearica DSM 9799]
          Length = 1152

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/359 (16%), Positives = 113/359 (31%), Gaps = 49/359 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ F  Q T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLKQIKLAGFKSFVDPTKVPFPDQMTAIVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS              F +   R+EG     A+I++K +   D       +N 
Sbjct: 61  MTDVIFNGSSGRKPVSVASVELVFDNQAGRLEGQYASYAEIAVKRQVTRDGQSNYF-LNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
              R  D +      + L P    I     + R   L                   R   
Sbjct: 120 NKCRRRD-ITDLFMGTGLGPRSYAIIEQGMISR---LIESKPHELRVFIEEAAGISRYKE 175

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIMEYVQKENFPHIKL 226
            R                +    +ELG +I   R +         +    +  +   + L
Sbjct: 176 RRRETENRIRHTRENLERLTDVRSELGSQIERLRRQADAARRYRELKAQERTLHGELLAL 235

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                     D +      E  K  ++       +  T +   R+DL          +  
Sbjct: 236 RWRELSGRMDDLNQVIQALETKKTQYESASAGDSATVTTLEQQRADL-------GAEVER 288

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
               +Q++  +G               + I  L++   H +  +R  L   V     Q 
Sbjct: 289 C---QQRLFALG---------------SQITRLEQQILH-NRQRRQQLEDEVRRNQVQA 328


>gi|168065224|ref|XP_001784554.1| condensin complex component SMC3 [Physcomitrella patens subsp.
           patens]
 gi|162663878|gb|EDQ50619.1| condensin complex component SMC3 [Physcomitrella patens subsp.
           patens]
          Length = 1192

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y        F  +H   VG NG GKTN   AI   LS      RA  
Sbjct: 1   MYIKQVIIEGFKSYKEQVATEPFSPKHNCVVGANGSGKTNFFHAIRFVLSDLFHHLRAED 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                          A VE +   +D  I ++  + R  R + +  
Sbjct: 61  RQALLHEGAGHQVLSAFVEIVFDNSDNRIPVDREEVRLRRTIGVKK 106



 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 104/281 (37%), Gaps = 22/281 (7%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
             ++G+E   +++++ E++D   +   +   ++    ++L K +R    +PS         
Sbjct: 881  ELKGLEDKYELTLQDESKDLEQLLNTRN--LLHAKREDLMKKIRDLGSLPSDAFEKYQKK 938

Query: 138  MERRRF-----LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
              +         +  +      +++ +  +      R  L        +   S + ++ E
Sbjct: 939  TLKELHKMLHKCNEQLKNYSHVNKKALDQYVNFTEQREELHKR----QAELDSGDEKIRE 994

Query: 193  LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
            L   ++  + E I      + ++ ++     +   L   +     ++  A  ++  +   
Sbjct: 995  LISVLDQRKDESIERTFKGVAKFFKEAFSELVPGGLGSLVMMTKRKAAEAGDDDPDE--- 1051

Query: 253  DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
            +G   D  +RR      +  +      +  ++   S G++ VV + +  A          
Sbjct: 1052 EGAPNDEEARREKYVGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFA-----IQRCD 1106

Query: 313  FAPILLLDEISAHLDEDKRNALFRIV---TDIGSQIFMTGT 350
             AP  L DEI A LD   R A+  ++    D G+  F+T T
Sbjct: 1107 PAPFYLFDEIDAALDPQYRTAVGNMIKRQADAGATQFITTT 1147


>gi|225851450|ref|YP_002731684.1| chromosome segregation protein SMC [Persephonella marina EX-H1]
 gi|225645745|gb|ACO03931.1| chromosome segregation protein SMC [Persephonella marina EX-H1]
          Length = 1162

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 19/158 (12%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASY 61
           I  +++  F++Y    L +         VG NG GK+NI ++I F   L+  +  R    
Sbjct: 6   IDRIHVYGFKSYGLRKLTIPVGNGFVGIVGPNGSGKSNIGDSIVFALGLATAKSMRALKL 65

Query: 62  ADVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVV-- 113
           +D+      R    +      + EG   L D  + +  + + + +   +IN    +    
Sbjct: 66  SDLIFSSRGRSAEYAEVEVVFKNEGAFPLNDEEVSIYRKVEHNGKSTYRINGRPAKQYEV 125

Query: 114 DELNKHLRI------SWLVPSMDRIFSGLSMERRRFLD 145
           +EL  +  I            + R       ERR  L 
Sbjct: 126 EELLSYAGIPKQGYNIVTQGDIFRFVKMTPSERRDLLS 163


>gi|156839518|ref|XP_001643449.1| hypothetical protein Kpol_483p10 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156114060|gb|EDO15591.1| hypothetical protein Kpol_483p10 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1118

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I+ + +  F  + +  +         VG+NG GK+ IL AI      +     R +S  +
Sbjct: 73  IRKVILRNFMCHENFSVELTPNLNFIVGNNGSGKSAILTAIIVALGVKASETSRGSSLKE 132

Query: 64  VTRIGSPS 71
           + R G  S
Sbjct: 133 LIRKGCNS 140


>gi|254582250|ref|XP_002497110.1| ZYRO0D15642p [Zygosaccharomyces rouxii]
 gi|238940002|emb|CAR28177.1| ZYRO0D15642p [Zygosaccharomyces rouxii]
          Length = 1170

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +KI+ L I  F++YA+  +   +D Q     G NG GK+N+L+AI F+         R +
Sbjct: 1   MKIEELIIDGFKSYATRTVISDWDPQFNAITGLNGSGKSNVLDAICFVLGIASMSTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+  + G          +            G E    +S+  +     + + L IN 
Sbjct: 61  SLQDLIYKRGQAGVTKASVTIVFSNLDPKCSPIGFENSPKLSVTRQIILGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
                   L     +   + + + +    
Sbjct: 120 HRAPQQSVLQLFQSVQLNINNPNFLIMQG 148


>gi|92118696|ref|YP_578425.1| chromosome segregation protein SMC [Nitrobacter hamburgensis X14]
 gi|91801590|gb|ABE63965.1| condensin subunit Smc [Nitrobacter hamburgensis X14]
          Length = 1170

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K+  L +  F+++      V +   T  VG NG GK+N++EA+ +    +  +  R A 
Sbjct: 3   MKLTRLRLHGFKSFVEPTDFVIEPGLTGVVGPNGCGKSNLVEALRWAMGETSYKSLRAAD 62

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
              V   G     + +       ++  +  A        ++++  R +R +    +IN  
Sbjct: 63  MEAVIFAGSGNRPARNHAEVVMSIDNSDRTAPSAVNDSETLEISRRIEREAGSVYRINGR 122

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 123 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 168



 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  T++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1058 GKKPQTLSLLSGGEQALTALALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1112

Query: 338  VTDIGSQIFMTGTDKSVF 355
            + +      MTG  ++ F
Sbjct: 1113 LHE------MTGATETRF 1124


>gi|298485964|ref|ZP_07004038.1| Chromosome partition protein smc [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159441|gb|EFI00488.1| Chromosome partition protein smc [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 597

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS---Y 61
           +KI+ + I  F+  ++  L   A  T+  G NG GK+++ EAI  L+ G   R A    Y
Sbjct: 14  MKIESIYIENFQGLSNANLELTAPITMVCGHNGAGKSSLKEAIG-LALGEAARVAKKGDY 72

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97
             +   G           +G      +      R D
Sbjct: 73  KMLITEGQKKGQIIIGH-DGAASTITLPTGKGERTD 107


>gi|290977298|ref|XP_002671375.1| structural maintenance of chromosome 2 [Naegleria gruberi]
 gi|284084943|gb|EFC38631.1| structural maintenance of chromosome 2 [Naegleria gruberi]
          Length = 955

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 29/274 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + I  F++YAS  +   FD       G NG GK+NIL+AI F   +S     R  
Sbjct: 1   MYIKEVYIDGFKSYASRTVLNGFDKSFNAITGLNGSGKSNILDAICFVLGISNLSQVRAN 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          V            G E  + I+++ +       +   IN 
Sbjct: 61  NLTELIYKQGQAGITKASVSVVFDNSDSANSPVGYEDQSTITVQRQIMIGGKNK-YMING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
              ++    N    +   V +   +     +   + L+     ++  I+     RM + +
Sbjct: 120 RNAQLNRVQNLFHSVQLNVNNPHFLIMQGRIT--KVLNMKPIEILGMIEEASGTRMFELK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           +    +  ++ +          +  ++     K+   R + +          VQ +N   
Sbjct: 178 KSSAQK-TIIKKDKKLEEIERILSEEITPKLEKLKSERAKCLQ----HETALVQLKNLER 232

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
              +   +      +     ++    K+   R+ 
Sbjct: 233 YYTAYEYYSHKNQLKKLEKEEKTLKDKIEGVREQ 266


>gi|75676792|ref|YP_319213.1| chromosome segregation protein SMC [Nitrobacter winogradskyi
           Nb-255]
 gi|74421662|gb|ABA05861.1| condensin subunit Smc [Nitrobacter winogradskyi Nb-255]
          Length = 1168

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 61/166 (36%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K+  L +  F+++      V     T  VG NG GK+N++EA+ +    +  +  R A 
Sbjct: 1   MKLTRLRLHGFKSFVEPTDFVIAPGLTGVVGPNGCGKSNLVEALRWAMGETSYKSLRAAD 60

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADIS----------IKLETRDDR-SVRCLQINDV 108
              V   GS        A V      +D S          +++  R +R S    +IN  
Sbjct: 61  MDAVIFAGSGNRPARNHAEVVMSIDNSDHSAPAAFNESEALEISRRIERESGSVYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  T++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1056 GKKPQTLSLLSGGEQALTALALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1110

Query: 338  VTDI 341
            + ++
Sbjct: 1111 LHEM 1114


>gi|70929827|ref|XP_736915.1| chromosome associated protein [Plasmodium chabaudi chabaudi]
 gi|218751460|emb|CAH85458.2| chromosome associated protein, putative [Plasmodium chabaudi
          chabaudi]
          Length = 225

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK + +  FR Y +   + F       VG NG GK+NIL AI F+
Sbjct: 1  MHIKQIKLKGFRTYKNETVIEFTKGINCIVGFNGSGKSNILMAIEFI 47


>gi|218678131|ref|ZP_03526028.1| ATP-dependent endonuclease of the OLD family-like protein
          [Rhizobium etli CIAT 894]
          Length = 85

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 7/55 (12%)

Query: 7  IKFLNISEFRNYASLRLVFD-------AQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++ L+I  FR +++  +          +  T+FVG+NG GKT++LEA+ +L  GR
Sbjct: 8  VRELSIDNFRCFSAETIKLAVPNGSHGSGLTLFVGNNGTGKTSVLEALDYLFSGR 62


>gi|295397721|ref|ZP_06807793.1| DNA repair protein RecN [Aerococcus viridans ATCC 11563]
 gi|294974050|gb|EFG49805.1| DNA repair protein RecN [Aerococcus viridans ATCC 11563]
          Length = 564

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  F     L + FD+  T+  G+ G GK+ I++A+  L  GRG       D  R
Sbjct: 2   LQHLTIKNFAIIEDLTIDFDSGMTVLTGETGAGKSIIIDAVGLLVGGRG-----STDFIR 56

Query: 67  IGSPSFFSTFARV------EGMEGLADISIKLETRDDRSVRCLQINDV 108
            GS  F             EG   LAD  I  +      VR L IN  
Sbjct: 57  YGSEKFDLRGIFYMPDLSEEGRNMLADNDIPFDDAQLMIVRQLDINGK 104


>gi|226356161|ref|YP_002785901.1| DNA repair protein [Deinococcus deserti VCD115]
 gi|226318151|gb|ACO46147.1| putative DNA repair protein RecN [Deinococcus deserti VCD115]
          Length = 534

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 91/271 (33%), Gaps = 42/271 (15%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            +  L +       SL L F    ++F G+ G GK+ I++A+  L   R     +  D+ 
Sbjct: 4   ALARLEVRNLATIESLDLDFAPGFSVFTGETGAGKSIIVDALGLLLGAR-----ANTDLI 58

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETR---DDRSVRCLQINDVVIRVVDELNKHLRI 122
           R G      +    +       ++I+  +    D   V   ++ D   R +    +H  +
Sbjct: 59  RTGEDGLLVSGFWQDEDIASRRVTIQGRSTARLDGEVVSLRELQDWAQRRLTIHWQHSAV 118

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSS 181
           S L           +  +R  LDR V      ++     ++   R R   L       + 
Sbjct: 119 SLL----------SAANQRALLDRQVTGEMQAYQAAYRAWQEA-RERLETLRTTERERAR 167

Query: 182 WCSSIEAQMAELGV-----------KINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
               +  Q  E+             + ++ R+  +  ++      +  E     + + TG
Sbjct: 168 QLDLLTFQAQEISQVAPQVGEEEPLQADLMRLSNLETIAQGAAGAL--ELLSEAEENATG 225

Query: 231 FL---------DGKFDQSFCALKEEYAKKLF 252
           +L           ++D++   L+ E    L 
Sbjct: 226 YLAEAVRALNASARYDETSAQLQLELRTALE 256


>gi|258542169|ref|YP_003187602.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633247|dbj|BAH99222.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636306|dbj|BAI02275.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639359|dbj|BAI05321.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642415|dbj|BAI08370.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645470|dbj|BAI11418.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648523|dbj|BAI14464.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651576|dbj|BAI17510.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654567|dbj|BAI20494.1| chromosome segregation protein SMC [Acetobacter pasteurianus IFO
           3283-12]
          Length = 1515

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 59/334 (17%), Positives = 107/334 (32%), Gaps = 52/334 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++   L I  F+++A  + +      T  VG NG GK+N++EA+ ++   S  R  R   
Sbjct: 3   VRFVRLRIVGFKSFADPVTVEILPGLTGIVGPNGCGKSNVVEALRWVMGESSARSLRGGE 62

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             D+   G     + S       +EG +G           +++  R +R S    +IN  
Sbjct: 63  MDDLIFAGTTGRPARSLAEVTVTLEGTKGFGPAAFADMDELQITRRAERGSGSDYRINGR 122

Query: 109 VIRVVD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLDR---MVFAIDPRHRR 157
            +R  D      +L    R S +V    +  +      ERR  L+    +      RH  
Sbjct: 123 PVRARDVQTLFADLASGARSSAMVSQGRVAMLVGARPEERRTILEEAAGITGLHARRHEA 182

Query: 158 RM------IDFERLMRGRNRL------LTEGYFDSSWCSSIEAQMAELGVK---INIARV 202
            +       +  R    R +L      L E   D+S    + A + E   +   +  AR 
Sbjct: 183 ELKLRATESNLTRAEDRRQQLSDRLDGLAEQSRDASRYRELSAALREAETELLAVLHARA 242

Query: 203 EMINALSSLIMEYVQKENFPHIKLSLTGFL----------DGKFDQSFCALKEEYAKKLF 252
            +    +       +K    H + + +  +            +          E  + L 
Sbjct: 243 RLAVERAIDNAARARKALTEHEEAAESAVVAEFEANKVLPGAREKADAARTALERCRVLA 302

Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           +G   +     T        L     D       
Sbjct: 303 EGVAREEERAATQANDAAERLKQHEADADAAKTR 336


>gi|221053632|ref|XP_002258190.1| chromosome associated protein [Plasmodium knowlesi strain H]
 gi|193808023|emb|CAQ38727.1| chromosome associated protein, putative [Plasmodium knowlesi strain
           H]
          Length = 1196

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/294 (16%), Positives = 99/294 (33%), Gaps = 44/294 (14%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL------------- 50
           + IK + +  FR Y     + F       VG NG GK+NIL AI F+             
Sbjct: 1   MYIKQIKLKGFRTYKNETTIDFTKGINCIVGFNGSGKSNILLAIEFILSDMCEYKQVFLH 60

Query: 51  -SPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
              G   R + Y ++    S  +FS F          +  +K++   +     + +N+  
Sbjct: 61  EGIGNAVR-SCYVEIIFDNSEKYFSMF---------KENEVKIKKVMENMKCEIYVNEKN 110

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
           I     +         V ++  I     + +   +              +   + ++  +
Sbjct: 111 ISKNQYVELLESCGLCVNNLYNIIKQGQIIKLSNMKDE---------EILNYLKSILGAK 161

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIKL 226
             +  E   D+   S ++   A+ G  I     EM   + +L +    +++ +     K+
Sbjct: 162 --IFEEKKKDA--LSMLKECDAKKGT-IEKEFQEMNTKLESLQAEFEHFLEYKKLEKEKV 216

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRTLIGPHRSDLIVDYC 278
            L   L+    ++     +    KL +   +  D  +  +L    +SD      
Sbjct: 217 HLEYHLNEINYKNVYKETQTLKSKLQELKNKTQDEDNNLSLTNNTKSDYTEQLN 270



 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 71/193 (36%), Gaps = 16/193 (8%)

Query: 170  NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSL 228
            N L       S+   +I+  +  +G K + A       +S    EY           L L
Sbjct: 972  NELKKRNEEISTSYKNIKDMIQHIGKKKDEALEATYLKISKYFSEYFSLLFKNRKATLVL 1031

Query: 229  TGFLDGKFDQSFCALKEEYAKK--LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                + ++        E+ A+K  + D   +D ++  ++    + D  + Y     TI  
Sbjct: 1032 KKMSEQEYKDILRDGNEKRARKKMIDDEAYVDKITGISINITSKEDEKMSY-----TIQE 1086

Query: 287  GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR---NALFRIVTDIGS 343
             S GE+ +V + +FL       N          DEI A LD   R   + L R +   G+
Sbjct: 1087 LSGGERSIVAICLFLCL-----NKIDNFSFFFFDEIDAALDTIHRDNLSLLLRELAQRGT 1141

Query: 344  QIFMTGTDKSVFD 356
            Q  +T   K + +
Sbjct: 1142 QFIITTFRKELLE 1154


>gi|156097979|ref|XP_001615022.1| chromosome associated protein [Plasmodium vivax SaI-1]
 gi|148803896|gb|EDL45295.1| chromosome associated protein, putative [Plasmodium vivax]
          Length = 1196

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 89/266 (33%), Gaps = 40/266 (15%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL------------- 50
           + IK + +  FR Y     + F       VG NG GK+NIL AI F+             
Sbjct: 1   MYIKQIKLKGFRTYKNETTIDFTKGINCIVGFNGSGKSNILLAIEFILSDMCEYKQVFLH 60

Query: 51  SPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
                  R+ Y ++    S  +FS F          +  IK++   +     + +N+  I
Sbjct: 61  EGIGSAVRSCYVEIIFDNSEKYFSMF---------KENEIKIKKVMENMKCEIYVNEKNI 111

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
                +         V ++  I     + +   +              +   + ++  + 
Sbjct: 112 SKNQYVELLESCGLCVNNLYNIIKQGQIIKLSNMKDE---------EILNYLKSILGAK- 161

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIKLS 227
            +  E   D+   S ++   A+ G  I     EM   + +L +    ++  +     K+ 
Sbjct: 162 -IFEEKKKDA--LSMLKECDAKKGT-IEKEFQEMNAKLESLQAEFEHFLAYKKLEKEKVH 217

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFD 253
           L   L+    ++     +    KL +
Sbjct: 218 LEYHLNEINYKNVYKETQTLKSKLQE 243



 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 42/202 (20%), Positives = 72/202 (35%), Gaps = 16/202 (7%)

Query: 161  DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
                LM   N L        +   +I+  +  +G K + A       +S    EY     
Sbjct: 963  RLNMLMSDFNELKKRNEEIGTSYKNIKDMIQHIGKKKDEALEATYLKISKYFSEYFSLLF 1022

Query: 221  FPH-IKLSLTGFLDGKFDQSFCALKEEYAKK--LFDGRKMDSMSRRTLIGPHRSDLIVDY 277
                  L L    + ++  +     E+ A+K  + D   +D ++  ++      D  + Y
Sbjct: 1023 KNRKATLVLKKMSEKEYKDTLREASEKRARKKMIDDEAYVDKITGISINITSNEDEKMSY 1082

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR---NAL 334
                 TI   S GE+ +V + +FL       N          DEI A LD   R   + L
Sbjct: 1083 -----TIQELSGGERSIVAICLFLCL-----NKIDNFSFFFFDEIDAALDTIHRDNLSLL 1132

Query: 335  FRIVTDIGSQIFMTGTDKSVFD 356
             R +   G+Q  +T   K + +
Sbjct: 1133 LRELAQRGTQFIITTFRKELLE 1154


>gi|330819124|ref|XP_003291614.1| hypothetical protein DICPUDRAFT_39291 [Dictyostelium purpureum]
 gi|325078179|gb|EGC31844.1| hypothetical protein DICPUDRAFT_39291 [Dictyostelium purpureum]
          Length = 307

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 6/117 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63
           I+ + +  F  +    + F +      G+NG GK+ ++ A+      +  F  R +   D
Sbjct: 109 IESITLENFMCHRHFHISFGSNVNFISGENGSGKSAVMIALIIALGAKASFTNRGSKITD 168

Query: 64  VTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           + R  +  S      R  G E             +R  R  +      ++ D   K 
Sbjct: 169 LIRTDTNHSLIKVVLRNRGPEAYQPEKYGNSIVIER--RINRNGGSGYKIKDHTGKV 223


>gi|154251155|ref|YP_001411979.1| chromosome segregation protein SMC [Parvibaculum lavamentivorans
           DS-1]
 gi|154155105|gb|ABS62322.1| chromosome segregation protein SMC [Parvibaculum lavamentivorans
           DS-1]
          Length = 1153

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +S F+++     L+ +   T  VG NG GK+N+LEA+ ++     F   R + 
Sbjct: 1   MKFNRLRLSGFKSFVDPTDLIIEPGLTGIVGPNGCGKSNLLEAMRWVMGENSFKNMRGSG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  +  A  +      I++  + +R      +IN  
Sbjct: 61  MEDVIFAGTSGRPARNHAEVVLYIDNGDRSAPPAYNDSEVIEVSRKIERDQGSTYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + S   + RRR L+
Sbjct: 121 EVRARDVQLLFADASTGAHSPALVRQGQIAQLISSKPINRRRILE 165


>gi|254416888|ref|ZP_05030636.1| chromosome segregation protein SMC [Microcoleus chthonoplastes
          PCC 7420]
 gi|196176252|gb|EDX71268.1| chromosome segregation protein SMC [Microcoleus chthonoplastes
          PCC 7420]
          Length = 1274

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + +K L ++ F+++  + ++      T+  G NG GK+NIL+A+ F   LS  +G R   
Sbjct: 2  VHVKRLELTNFKSFGGTTQIPMLPGFTVVSGPNGSGKSNILDALLFCLGLSSSKGMRAER 61

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLAD 87
            D+         +  ARV     L+D
Sbjct: 62 LPDLVNHNKERRSTVEARVTVTFDLSD 88


>gi|121603905|ref|YP_981234.1| ATP-dependent OLD family endonuclease [Polaromonas
           naphthalenivorans CJ2]
 gi|120592874|gb|ABM36313.1| ATP-dependent endonuclease of the OLD family [Polaromonas
           naphthalenivorans CJ2]
          Length = 637

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 73/219 (33%), Gaps = 38/219 (17%)

Query: 4   RIKIKFLNISEFRNY----------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
            + +  + +  FR Y           +L L F++   + +G+N  GK+ I++AI  +   
Sbjct: 55  NMHLSKIKLWNFRKYGDNSTFILEKPNLYLDFNSGLNVLIGENDSGKSAIIDAIRLVMKT 114

Query: 54  RGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
             +      D  RI    F     R+     LADI  +        +    ++ + +  +
Sbjct: 115 HSY------DWLRIDDDDFHVGQNRLRIELTLADIKPEEGKNFTEFLSWEILDGITVPSL 168

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR--------HRRRMIDFERL 165
             L   ++ + L   +         E R   D     + P         + + + D +  
Sbjct: 169 R-LILDVKKNLLTNQV------SPYEVRAGADADGRQLSPEAKEYLKVTYLKPLRDAKEE 221

Query: 166 MRGR-NRLL------TEGYFDSSWCSSIEAQMAELGVKI 197
           +  R N  L       E + +      +  Q+A     I
Sbjct: 222 LVARKNSRLSQILVGHEAFKNRGTDHLLMGQLANFNESI 260


>gi|282897603|ref|ZP_06305603.1| Chromosome segregation protein SMC [Raphidiopsis brookii D9]
 gi|281197526|gb|EFA72422.1| Chromosome segregation protein SMC [Raphidiopsis brookii D9]
          Length = 1194

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 54/239 (22%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + ++ F+++  +  +      T+  G NG GK+NIL+A+ F   LS  +G R   
Sbjct: 2   VHIKRVELTNFKSFGGTTSVPLLPGCTVISGPNGSGKSNILDALLFCLGLSSSKGMRADK 61

Query: 61  YADVTRIGS--------PSFFSTFARVEGMEGLADISIKLETRDDRSVRC---------- 102
             D+              +  +    +  M  L +++ ++   + +  +           
Sbjct: 62  LPDLVNNNQTAKGRNPVEAIVTVTFDISDMVSLPEVTEEVTQVNGQENKSPTLTLWSVTR 121

Query: 103 -------------LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS---------MER 140
                          IN      + EL++ L    + P    +               ER
Sbjct: 122 RLRVHSQGTYTSNYYINGSSC-TLTELHEELERLRIYPEGYNVVLQGDVTSIISMNGKER 180

Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199
           R  +D +           +  ++R +      L E       C  IE ++     ++  
Sbjct: 181 REIIDELAG---------VAAYDRKINQAKGTLEEVKEKEDSCRIIEGELIAQRDRLYQ 230


>gi|209549897|ref|YP_002281814.1| ATP-dependent endonuclease of the OLD family-like protein
          [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209535653|gb|ACI55588.1| ATP-dependent endonuclease of the OLD family-like protein
          [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 496

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 7/55 (12%)

Query: 7  IKFLNISEFRNYASLRL-------VFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          I+ L+I  FR +++  +          +  T+FVG+NG GKT+ LEA+ +L  GR
Sbjct: 8  IRELSIDNFRCFSAETINLAVPNGSLGSGLTLFVGNNGTGKTSALEALDYLFGGR 62


>gi|166363290|ref|YP_001655563.1| hypothetical protein MAE_05490 [Microcystis aeruginosa NIES-843]
 gi|166085663|dbj|BAG00371.1| hypothetical protein MAE_05490 [Microcystis aeruginosa NIES-843]
          Length = 383

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 72/391 (18%), Positives = 131/391 (33%), Gaps = 65/391 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  FR + +  +    +  + VG N  GKT+ILEAI FL                
Sbjct: 2   LQSLKIEGFRGFQNFEMANLGRINLLVGKNNSGKTSILEAIQFL---------------- 45

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-VVDELNKHLRISWL 125
                               +I I LET   R       N +  R  V E+        +
Sbjct: 46  ----------------YAQNNIDIFLETISYRGEFAWLENKLAGRTKVFEICHLFPGHEI 89

Query: 126 VPSMDRIFSGLSMERR-------RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           VPS + I  G     +       + +   +     ++     D        N+LL    +
Sbjct: 90  VPSQEIIIIGSRESHQESVTISVKSIPIQLSLFSDKNDDLNNDNIFDDEEWNKLLLSIRW 149

Query: 179 DSSWCSSIEAQMAELG--VKINIARVEMINALSSL--IMEYVQKENFPHIKLSLTGFLDG 234
             S    IE ++   G   + +I R+  ++ +S    I   ++ +      L+ +     
Sbjct: 150 SQSQ-KPIEMELLANGTLARDSIRRIASLSRISHKIGIDNQIELKFLTPFSLTSSDMAAL 208

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH--------RSDLIVDYCDKAITIAH 286
             +     L++   + L             + G +        R   ++   +    I  
Sbjct: 209 FDNIVLSPLEDLIIESLKIIEPKIERIASVVSGKYLTSNNLGVRGGFLIKIKNHDQPIPI 268

Query: 287 GSTG-EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD----EDKRNALFRIVTDI 341
           GS G      ++G+ LA   L         ILL+DEI + L      D    ++     +
Sbjct: 269 GSLGDGFWR-MLGLVLAMVNL------KNGILLVDEIDSGLHFTVMTDMWKVVWETAKKL 321

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
             Q+F T   +  + SL E     +I++++ 
Sbjct: 322 NIQVFATTHSRDCWQSLAELITEEKITDNEI 352


>gi|150399403|ref|YP_001323170.1| SMC domain-containing protein [Methanococcus vannielii SB]
 gi|150012106|gb|ABR54558.1| SMC domain protein [Methanococcus vannielii SB]
          Length = 1019

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 83/210 (39%), Gaps = 26/210 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62
           + IK + I  F+++ + +L  +   T  +G NG GK++I +A++F       R A++   
Sbjct: 1   MIIKSIKIENFKSHRNTKLQLNKGITTIIGHNGSGKSSIFQAMNFALF--SPRGANFKID 58

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--------VVIRVVD 114
           ++ + GS SF      +E         +K +   +++   L IN          V + ++
Sbjct: 59  NMMQKGSKSF---SIELEFEIRGNSYLVKRKRYQNKTEDKLYINGILNVESSSEVNKKIE 115

Query: 115 ELNKHLRISWLVP------SMDRIFSGLSMERRRFLDRMVF--AIDPRHRR---RMIDFE 163
           E+ +     +          +  +    S +R+  + +++     +  + +       +E
Sbjct: 116 EILELDNSIFSNAVYIKQGEIANLIQMTSGDRKEVIGKLLGIERYEKVYEKINIIKKAYE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
             +   N  L +    ++    +  ++  L
Sbjct: 176 ERLFEINGELKQEIEVTNLLEKLNLEILRL 205



 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 75/224 (33%), Gaps = 32/224 (14%)

Query: 169  RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKENFPHIKLS 227
            RN+L+ +   + ++      ++      I     E       +  E  V+KEN   +   
Sbjct: 791  RNKLINDIQ-EINYNEERHKELNIYFENILKELHEFSKKFERISSELTVKKENSESLNKK 849

Query: 228  LTGFLDGKFDQSFCALKEEYAKKLF------DGRKMDSMSRRTLIGPHRSDLIV------ 275
            +      K ++      +EY +K+       DG +     +   +    ++ I       
Sbjct: 850  IKELALKKEEKQKIESFKEYLEKIRREVFSKDGFQKYLREKYIPLIQRHANQIFQEFELP 909

Query: 276  ----------DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
                            + +   S GEQ  V + + L    +          ++LDE +A+
Sbjct: 910  YSHIQLKEDYSLIVDGLPVETLSGGEQIAVSLALRLG---ISKAVCNNIECIILDEPTAY 966

Query: 326  LDEDKRNALFRI---VTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
            LDE++R  L  I   +  I     +T       + + +    +R
Sbjct: 967  LDEERRKNLLNIFRNIKTISQMAIIT--HHQELEQIADNILTVR 1008


>gi|312977115|ref|ZP_07788864.1| DNA replication and repair protein RecF [Lactobacillus crispatus
           CTV-05]
 gi|310896443|gb|EFQ45508.1| DNA replication and repair protein RecF [Lactobacillus crispatus
           CTV-05]
          Length = 75

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAK 363
           +L+   T   P+LLLD++ + LD  +++AL   +    +Q F+T TD       + +  +
Sbjct: 2   QLVHQLTDEYPLLLLDDVMSELDHGRQSALLNYI-HGKTQTFITTTDLEGISWEIIKKPR 60

Query: 364 FMRISNHQA 372
              I + + 
Sbjct: 61  VYHIQSGKI 69


>gi|224071509|ref|XP_002303494.1| predicted protein [Populus trichocarpa]
 gi|222840926|gb|EEE78473.1| predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/241 (20%), Positives = 79/241 (32%), Gaps = 28/241 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I  + +  F  + +L++  D       G NG GK+ IL A+      R     R A+  D
Sbjct: 23  ISRIRLENFMCHDNLQIELDQWVNFVTGRNGSGKSAILTALCIAFGCRAKGTQRAATLKD 82

Query: 64  VTRIGSPSFFS-TFARVEGMEG-LADI---SIKLETRDDRSVRCLQINDVVIRV------ 112
             + G          R  G E    DI   SI +E R ++S     + D   R       
Sbjct: 83  FIKTGCSYAVVEVEVRNRGEESFKPDIYGDSIIIERRINQSSSTTVLKDHQGRKVASRRE 142

Query: 113 -VDELNKHLRISWLVPSMDRIFSGLSMERRRFL---DRMVFAIDPRHRRRMIDFERLMRG 168
            + EL +H  I    P           + R FL   +             +     L+  
Sbjct: 143 DLRELIEHFNIDVENPC----VIMSQDKSREFLHSGNEKDKFKFFFKATLLQQVNDLLLS 198

Query: 169 RNRLLTEGYFDSSWCSS----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            N  L           +    IE ++ EL  KI    +E +  +S    +  +K  +  +
Sbjct: 199 INEQLKSANALVDELEASIKPIEKELTELQGKI--KNMEHLEEMSQQAQQLKKKLAWSWV 256

Query: 225 K 225
            
Sbjct: 257 Y 257


>gi|15644384|ref|NP_229436.1| hypothetical protein TM1636 [Thermotoga maritima MSB8]
 gi|18203590|sp|Q9X1X1|RAD50_THEMA RecName: Full=Probable DNA double-strand break repair rad50 ATPase
 gi|4982209|gb|AAD36703.1|AE001806_13 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 852

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 12/116 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ + L +  F    ++ + F +  T+  G NG GK+++ EAISF   G G R  +  D 
Sbjct: 1   MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDY 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
               +            ++G A +  + E    R     +IN +  +   +L++ L
Sbjct: 61  VNRNA------------VDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEIL 104


>gi|322836795|ref|YP_004210709.1| hypothetical protein AciX9_4652 [Acidobacterium sp. MP5ACTX9]
 gi|321165882|gb|ADW71582.1| hypothetical protein AciX9_4652 [Acidobacterium sp. MP5ACTX9]
          Length = 617

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + +  L I  FR    + + F +   I VG N VGKT +++A+  L  G          +
Sbjct: 9  VYLSQLTIRNFRKLERVDVSFQSGLNILVGPNNVGKTAVIDALRALLGG------HDEPL 62

Query: 65 TRIGSPSFFST 75
           R+ S   F +
Sbjct: 63 PRLSSDDLFRS 73


>gi|269926979|ref|YP_003323602.1| SMC domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269790639|gb|ACZ42780.1| SMC domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 1021

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI  L+++  ++Y +  + F+       G+NG GKT ILEAI
Sbjct: 1  MKILKLHLTNIKSYDNTTIEFEPGTNSIHGENGAGKTTILEAI 43


>gi|283852709|ref|ZP_06369974.1| ATPase involved in DNA repair-like protein [Desulfovibrio sp.
          FW1012B]
 gi|283571887|gb|EFC19882.1| ATPase involved in DNA repair-like protein [Desulfovibrio sp.
          FW1012B]
          Length = 495

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I  L + +F  +A           +  G N  GK+ ++EA+  L+     R      V R
Sbjct: 2  ITRLTLLDFMAHARTVFDLAPGLNVLTGPNNTGKSAVVEALRCLA-----RNPPPKHVIR 56

Query: 67 IGSPSFFSTFARVEG 81
           G+     T    +G
Sbjct: 57 HGATEARVTAETDDG 71


>gi|294649512|ref|ZP_06726933.1| chromosome segregation ATPase [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824573|gb|EFF83355.1| chromosome segregation ATPase [Acinetobacter haemolyticus ATCC
           19194]
          Length = 858

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 100/291 (34%), Gaps = 46/291 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F A  T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLHFKANRTAVVGPNGCGKSNVIDAIRWVMGESNARQLRGGS 60

Query: 61  YADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G               F +T+ ++ G     +  + +  +  R  +    +N 
Sbjct: 61  MQDVIFTGTSKRKPVGVASVELRFDNTYGKLGGAYNAYN-ELAVRRQVTREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   R+F   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAVIEQGMISRLVEAKPEEMRVFIEEAAGVSRYQARRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
             + +   +     R+ D    ++ + R L      +    ++E+Q+  L ++I   +  
Sbjct: 180 TLQHLEHTEQN-LARLEDIAVELKSQLRTLKRQSEAAIQYKTLESQIRHLKIEILSFQAN 238

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
             + L     EY  +      +  L        +    A    + + +   
Sbjct: 239 QSHKLQ---QEYTVEMTDLGERFKLVRSESNTIEHDLEATSALFQRLIQQS 286


>gi|329850283|ref|ZP_08265128.1| chromosome segregation protein SMC [Asticcacaulis biprosthecum C19]
 gi|328840598|gb|EGF90169.1| chromosome segregation protein SMC [Asticcacaulis biprosthecum C19]
          Length = 1156

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           ++ + + +S F+++        D   T  VG NG GK+N+LEA+ ++         R A 
Sbjct: 1   MQFQKIKLSGFKSFVDATEFRIDPGLTGIVGPNGCGKSNLLEALRWVMGATSAKAMRGAG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIK-------LETRDDRSVRCLQINDV 108
             DV   GS      ++      ++  + LA                D  +    +IN  
Sbjct: 61  MDDVIFAGSDKRPSRNWAEVTLTIDNSDRLAPQPFTDQPVLDVARRIDRGAGSSYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + +     RRR L+
Sbjct: 121 EVRARDVQLLFADASTGANSPALVRQGQISELIAAKPQNRRRVLE 165


>gi|229163120|ref|ZP_04291076.1| DNA repair protein recN [Bacillus cereus R309803]
 gi|228620526|gb|EEK77396.1| DNA repair protein recN [Bacillus cereus R309803]
          Length = 583

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 71/287 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI---------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
            ++         + + +++       L+     +F     +  R + ++       ++  
Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQLG-----IYQNV 170

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIME 214
             D+E+L +     L          S  E QMA         R+++I      +    ++
Sbjct: 171 YADYEKLKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLK 211

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             ++      +L ++      F++ + AL + Y     DG+ +D++ 
Sbjct: 212 MDEENELTEERLQISN-----FEKIYKALGDAYRSLSADGQGLDNVR 253


>gi|170289089|ref|YP_001739327.1| SMC domain-containing protein [Thermotoga sp. RQ2]
 gi|170176592|gb|ACB09644.1| SMC domain protein [Thermotoga sp. RQ2]
          Length = 852

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 12/116 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ + L +  F    ++ + F +  T+  G NG GK+++ EAISF   G G         
Sbjct: 1   MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNG--------- 51

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            R  +      +      +G A +  + E    R     +IN +  +   +L++ L
Sbjct: 52  IRYPNSY---DYVNKNATDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEIL 104


>gi|152976578|ref|YP_001376095.1| DNA repair protein RecN [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152025330|gb|ABS23100.1| DNA repair protein RecN [Bacillus cytotoxicus NVH 391-98]
          Length = 579

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 31/209 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 2   LSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110
            G+                   A+ E ++   +  + +  RD         +IN  ++  
Sbjct: 57  YGTEKAEIEGLFYIEDDKHPCIAKAEELDIEIEDGMMILKRDIAANGKSVCRINGKLVTL 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164
            ++ E+ K L           + +    ER  F+      +R+V  ++  ++   + +E+
Sbjct: 117 SILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGNRIVKQLEK-YQEVYVKYEQ 172

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           L +    L       +     I+ Q  E+
Sbjct: 173 LKKQLKALTENEQQMAHRLDLIQFQYEEI 201


>gi|300767242|ref|ZP_07077154.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308180456|ref|YP_003924584.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|300495061|gb|EFK30217.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum
           ATCC 14917]
 gi|308045947|gb|ADN98490.1| DNA repair protein RecN [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 564

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 133/407 (32%), Gaps = 61/407 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I+ F     L + F+A  T+  G+ G GK+ I++A+  L+ GRG      A+  R
Sbjct: 2   LQELSITNFAIIEHLDIAFEAGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SAEFIR 56

Query: 67  IGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIR-- 111
            G+                +     E     AD ++ L+    +S R   +IN +++   
Sbjct: 57  TGADKAVLQGMFILPADGVTAQLLDEAGIEHADNTVILQREITKSGRNTCRINGMLVNTT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-------RRRMIDFER 164
            + ++ + +           +      +    LD    A   +          R      
Sbjct: 117 TLKQIGETIVDIHGQNEHQELMQ--PEKHLGLLDEFAAAKIRKLKQRYQQQYDRYQQLNL 174

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +R +N    E          +  Q+ E+         E         ++  Q  N   +
Sbjct: 175 ELRQKNANEKEWAQR---LDMLNFQVDEIAAAQVKVGEEASLTAERDRLDNYQMINQA-L 230

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-----HRSDLIVDYCD 279
           + S T    G+       +       L     +D       +          D      +
Sbjct: 231 QQSYTLLAAGEETTGAVDMVGTAMNALEPIANLDPAFNEITVNVKNAFYGLQDAAGQISN 290

Query: 280 KAITIAHGSTG-----EQKVVLVGIFLAHARLISNTTGFAPILLLD---EISAHL----- 326
           +         G     EQ++ ++         +    G +   +LD   +I+A L     
Sbjct: 291 QLDLQEFD-EGRLDEIEQRLDILA-------QLKRKYGDSEQQILDYYQKIAAELAKMTD 342

Query: 327 DEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
            E+    L + V D+  Q+  TG  +++ D     AK ++   HQ L
Sbjct: 343 SEENSEDLAQRVADLKQQLLTTG--EALSDKRRAAAKVLQRQIHQEL 387


>gi|294654495|ref|XP_456553.2| DEHA2A05324p [Debaryomyces hansenii CBS767]
 gi|199428929|emb|CAG84508.2| DEHA2A05324p [Debaryomyces hansenii]
          Length = 1088

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I+ + +  F  + S  L    Q    +G NG GK+ IL  IS     +     R +S  +
Sbjct: 63  IEKIILKNFMCHDSFELNLGPQLNFIIGRNGSGKSAILTGISIGLGVKASDTSRGSSIKN 122

Query: 64  VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           + + G  +   +   R EG+E         +   +R ++    N   IR 
Sbjct: 123 LIKDGKSTARVTVVFRNEGIEAYKPEEYGSKIIVERKIQRQGSNGYFIRS 172


>gi|302677831|ref|XP_003028598.1| hypothetical protein SCHCODRAFT_83108 [Schizophyllum commune H4-8]
 gi|300102287|gb|EFI93695.1| hypothetical protein SCHCODRAFT_83108 [Schizophyllum commune H4-8]
          Length = 1127

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 18/137 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  L +  F++Y    R+  +D       G NG GK+NIL+AI F   ++  +  R A
Sbjct: 1   MRITELVLEGFKSYPVRTRIDGWDPSFNAITGLNGSGKSNILDAICFALGINNMQQMRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +           +G+EG+ +I++  +     + + L IN 
Sbjct: 61  TLQDLIYKRGQAGITKASVTIVFDNSEKDKSPQGLEGMREITVTRQITLPIATKYL-ING 119

Query: 108 VVIRVVDELNKHLRISW 124
              +    L     +  
Sbjct: 120 RKAKQEQVLTLFQSVQL 136


>gi|56808932|ref|ZP_00366640.1| COG1196: Chromosome segregation ATPases [Streptococcus pyogenes M49
           591]
          Length = 1179

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A+V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDVIFAGTQNRNPLNYAKVAVILDNSDHFIKTANKEIRVERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216
             +      L       Y   +  + +E Q  +A+  ++++  R ++ ++ L   I    
Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +++      L+        +     +++E+Y K
Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271


>gi|325294865|ref|YP_004281379.1| SMC domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065313|gb|ADY73320.1| SMC domain protein [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 905

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 81/221 (36%), Gaps = 20/221 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ L +  F ++    L FD +  + +G+N  GKT+IL  I F   G+ F       + 
Sbjct: 3   RLRSLKLEGFLSHRLTELEFDDESYVILGENASGKTSILRGIFFALFGKDFSSDKLERIV 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI------------RVV 113
                +  S F        L  +  K      +S   L+ N   I            + +
Sbjct: 63  NK-QTNKLSVFLSFLHRGNLYTVKRKFSLVRKKSEAELEKNGKPIAIGVKNVNHVIEKEL 121

Query: 114 DELNKHLRISWLVP--SMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGR 169
                  R +  +P   +  +F     E+R+ L+R++    I+ +H +  +   R+   R
Sbjct: 122 GLDPNIFRNTVYIPQGEILTLFEIARKEKRQVLNRLLGLEEINRKHEKVKVFINRIKVLR 181

Query: 170 NRLLTEGYFDSSW---CSSIEAQMAELGVKINIARVEMINA 207
           + LL +             ++ ++ +    I   R E+   
Sbjct: 182 DALLEKKKSFEELEVEIRKLQKEVEKTKKSIAKLRAELAQE 222



 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 47/106 (44%), Gaps = 12/106 (11%)

Query: 270 RSDLIVDYCD---KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
             DL V +       + +   S G+Q    + +  A AR  S       +L+LDE + HL
Sbjct: 796 SEDLTVTFGIPGRGTMQVEEFSGGQQIAFALSLRFAMARYFSQNF---ELLILDEPTIHL 852

Query: 327 DEDKRNALFRIVTDIGS---QIFMTGTDKSVFDSLNETAKFMRISN 369
           D+ +R +L  ++  + +   Q+ +  T     + + +  + +R+ N
Sbjct: 853 DQQRRQSLTDLLIKLKNKIPQMII-VTHDPELEVVGD--RVIRVKN 895


>gi|253572839|ref|ZP_04850238.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251837571|gb|EES65663.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 602

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 139/369 (37%), Gaps = 43/369 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRG--FRRASY 61
           + +  L+IS+FR +  + L F     I +G+N  GKT I++A+   L  G+   F     
Sbjct: 10  MYLSRLHISKFRVFDDITLYFKNGINILIGENNSGKTAIIDALRICLGCGKPDNFIYVQD 69

Query: 62  ADV-TRIGSPSFFSTFARVEGMEGLADISIKLET--------RDDRSVRCLQINDVVIRV 112
            D+     +PS  +T  + + +    D SI+ E         +D+   + +Q++   I+ 
Sbjct: 70  GDLHVNPENPSEINTVIQFDLIFEFGDASIERECFYDFISQDKDNPDKQTIQLHLKFIQE 129

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
            +   K+ +         RI  G   E ++     +  I   +   + D           
Sbjct: 130 NNGKKKYFK---------RIIWGGDNEGQQVPYESLQEIFYTYLSPLRD--------AVS 172

Query: 173 LTEGYFDSSWCSSIEAQMAEL--GVKINIARVEMINALSSLIMEYVQKENFPHIKL--SL 228
               Y   +  S +  Q+ +   G +      E   +L+  + +  + + +    +  + 
Sbjct: 173 CLRPYSYDNKTSQLFNQLTKYDKGNESIPLNEEKKKSLAKNLYQIFENDAYDWKHILTTG 232

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRK-MDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
              ++   + +   LK    +  + GR+  D +    L  P    +      K  T++  
Sbjct: 233 KSKVNEHLEGTGITLKHPDIEMRYVGREFSDVVRGIELKCPVYKTVEAGQEQKYFTLSQN 292

Query: 288 STGEQKVVLVGIFLAHARLISN----TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
             GE  ++   + L    LI+            LL++E  AHL    +N  F  + ++ S
Sbjct: 293 GLGENNLIFTSVVL--GDLINRCEDHALEIYNALLVEEPEAHLHPQYQNTFFEYLNELQS 350

Query: 344 ---QIFMTG 349
              Q+F+T 
Sbjct: 351 KGLQVFVTS 359


>gi|332359506|gb|EGJ37325.1| recombination protein F [Streptococcus sanguinis SK1056]
          Length = 59

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
           +LLD++ + LD +++  L   ++    Q F+T T      +L +  K   I   Q + 
Sbjct: 1   MLLDDVMSELDNNRQLKLLETISQ-DIQTFITTTTLEHLKNLPQDIKIFTIQQGQIMS 57


>gi|291535140|emb|CBL08252.1| condensin subunit Smc [Roseburia intestinalis M50/1]
          Length = 1186

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 82/219 (37%), Gaps = 26/219 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  R AS
Sbjct: 1   MYLKSIEVQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGAS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   G+      S+      ++  +    +  +  T   R  R       +N    R
Sbjct: 61  MQDIIFAGTENRKPLSYAYVAITLDNADHKLPVDYEEVTVARRVYRSGESEYLLNGNTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +++I +G   ERR   D     +  + R+     +
Sbjct: 121 LKDVTELFYDTGIGKEGYSIIGQGQIEKILNGKPEERRELFDEAAGIVKYKKRKATAQ-K 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
           +L   R  L+          S +E Q+  L  +   ARV
Sbjct: 180 KLENERENLVRVN----DILSELERQVGPLEKQAEKARV 214



 Score = 36.4 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 27/240 (11%)

Query: 126  VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            +  +D+    L+ +R +  D   +  +        ++E  +     L  + Y D S    
Sbjct: 917  ISELDKEVFRLNSQREKLNDAREYQTN----YMWQEYELTLHAAMDLRDDTYDDLSTLKK 972

Query: 186  IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + AQ+ +   K+    V  I     +   Y   +      +     L G  ++    +++
Sbjct: 973  MIAQIKDEIRKLGDVNVNAIEDYKEISERYQFLKTQHDDLIEAEKTLIGIIEELDTGMRK 1032

Query: 246  EYAKKLFDGRK------MDSMSRR--TLIGPHRSDLI---VDYCDKAITIAHG-----ST 289
            ++ +K  + +K       +       TL      D++   +    +            S 
Sbjct: 1033 QFMEKFAEIQKQFDTVFKELFGGGKGTLELVEDEDILECGIRIIAQPPGKKLQNMMQMSG 1092

Query: 290  GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
            GE+ +  + +  A           +P  LLDEI A LD+       + +  +   +Q  +
Sbjct: 1093 GEKSLTAIALLFA-----IQNLKPSPFCLLDEIEAALDDSNVTRFAKYLHKLTQNTQFIV 1147


>gi|148270285|ref|YP_001244745.1| SMC domain-containing protein [Thermotoga petrophila RKU-1]
 gi|281412591|ref|YP_003346670.1| SMC domain protein [Thermotoga naphthophila RKU-10]
 gi|147735829|gb|ABQ47169.1| SMC domain protein [Thermotoga petrophila RKU-1]
 gi|281373694|gb|ADA67256.1| SMC domain protein [Thermotoga naphthophila RKU-10]
          Length = 852

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 12/116 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++ + L +  F    ++ + F +  T+  G NG GK+++ EAISF   G G         
Sbjct: 1   MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNG--------- 51

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            R  +      +      +G A +  + E    R     +IN +  +   +L++ L
Sbjct: 52  IRYPNSY---DYVNKNATDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEIL 104


>gi|15922434|ref|NP_378103.1| purine NTPase [Sulfolobus tokodaii str. 7]
 gi|15623223|dbj|BAB67212.1| 882aa long hypothetical purine NTPase [Sulfolobus tokodaii str.
          7]
          Length = 882

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
          ++ I+ ++I  F ++    + F     + +G NG GK++I++AISF    +  R A    
Sbjct: 3  KMIIRRIDIENFLSHDRSLIEFKGTVNVIIGHNGAGKSSIIDAISFSLFRKSLRDAKKQE 62

Query: 63 DVTRIGSPSFFST 75
          D+ + G+     T
Sbjct: 63 DLIKRGAGRATVT 75



 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 109/284 (38%), Gaps = 39/284 (13%)

Query: 78  RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
            ++G E        L  + + + + ++ N+  I+    L   L++    P+  +      
Sbjct: 612 EIKGKENKLRELDTLLAKIETAKQKIKQNEEEIKK---LTDELQLLNFDPNRFQQIKRE- 667

Query: 138 MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +  L++++  I+ +    +   + ++    + L E   D       + ++     K+
Sbjct: 668 ---KEVLEKILGEINSKKGELLGK-KEVLENDIKRLEEQIKDYEEKLKNKQKLITAYDKL 723

Query: 198 NIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
              R  +    L + +M  V+      ++ SL   L  +F+ SF  ++ ++  K      
Sbjct: 724 KKLREHLAEDKLQAYLMNTVKSL----VEDSLNSILS-RFELSFTRVEVDFNDK------ 772

Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
            + +   T  G              + +   S GE+  + + + LA A+ + N  G    
Sbjct: 773 -NGIYAYTTSGQ------------RLPVNLLSGGERVSIALALRLAIAKSLMNEVG---F 816

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357
           L+LDE + +LDE ++  L  I+        QI +   D+ +  +
Sbjct: 817 LILDEPTVNLDEYRKKELIDIIRSTVEVVPQIIVVTHDEELLQA 860


>gi|288553093|ref|YP_003425028.1| chromosome segregation SMC protein [Bacillus pseudofirmus OF4]
 gi|288544253|gb|ADC48136.1| chromosome segregation SMC protein [Bacillus pseudofirmus OF4]
          Length = 1188

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 97/287 (33%), Gaps = 26/287 (9%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++   + + F    T  VG NG GK+NI +A+ ++      +  R + 
Sbjct: 1   MFLKRLEVVGFKSFAEQMNIEFVPGVTAVVGPNGSGKSNISDAVRWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             D+   GS +     +A V  +    D  + ++  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDTRKRLNYAEVSLILDNEDQHLSIDYSEVSVTRRVYRSGDSEYLINKQPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ I S  + +RR   +     +  + R+   +  
Sbjct: 121 LKDIIDLFLDSGLGREAYSIIGQGKVEEILSSKAEDRRVIFEEAAGVLKYKTRKVKAEKR 180

Query: 164 RLMRGRNRLLTEGYFDS--SWCSSIEAQMA---ELGVKINIARVEMINALSSLIMEYVQK 218
                 N L  E       +    +E Q +   +   K    +   I  +   I E  Q+
Sbjct: 181 LTETQDNLLRVEDILHELKAQVEPLEIQASIAKDYLEKKEELKEVEIALMVHEIEELHQE 240

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
            N    KL        K  Q    ++EE        + +D     T 
Sbjct: 241 WNSEKEKLQSLHQEHDKRHQKLIEMEEELESLRERSKHLDRELSVTQ 287


>gi|171684911|ref|XP_001907397.1| hypothetical protein [Podospora anserina S mat+]
 gi|170942416|emb|CAP68068.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1089

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
            I  + +  F  Y+  +        + +G NG GK++++ AI  L  G       R +++
Sbjct: 50  AIVRVKLRNFVTYSEAQFSLGPNLNMVIGPNGTGKSSLVCAIC-LGLGYPPNVLGRASTF 108

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKH 119
            D  + G+             E   +  I L  R + + R   IN     + D  +L + 
Sbjct: 109 GDFVKHGNDEAELEVELQRKPEDAENYVIGLVIRREDNSRKFTINGSRSTLKDVQKLMRS 168

Query: 120 LRISW-----LVPSM 129
           LRI        +P  
Sbjct: 169 LRIQIDNLCQFLPQD 183


>gi|167389827|ref|XP_001739101.1| structural maintenance of chromosomes protein [Entamoeba dispar
           SAW760]
 gi|165897350|gb|EDR24540.1| structural maintenance of chromosomes protein, putative [Entamoeba
           dispar SAW760]
          Length = 1023

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 13/131 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63
           I+ +++  F  +  L+L   +Q    VG+NG GK+ IL A++     +  F  R    +D
Sbjct: 9   IERIDLENFMCHRHLQLDLCSQVNFIVGENGSGKSAILVALAICFGAKATFTNRGKRVSD 68

Query: 64  VTRIGSPSFFSTFARVEGMEGLAD---------ISIKLETRDDRSVRCLQIN-DVVIRVV 113
           + + G      +       EG  D         I  K+      S +   +N     R++
Sbjct: 69  IVKNGETHCKVSVYLRNRGEGAMDKEKYGDTIIIERKISKEGGSSYKIYSMNSGEKPRII 128

Query: 114 DELNKHLRISW 124
              +  +    
Sbjct: 129 GHKSSDVNEIL 139


>gi|325290419|ref|YP_004266600.1| chromosome segregation protein SMC [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965820|gb|ADY56599.1| chromosome segregation protein SMC [Syntrophobotulus glycolicus DSM
           8271]
          Length = 1198

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 112/296 (37%), Gaps = 40/296 (13%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62
           +K L+I  F+++A  L+L F A   + VG NG GK+N+ +A+   L     +  R +   
Sbjct: 11  LKALHIQGFKSFADKLKLEFGAGMCVIVGPNGSGKSNVADAVRWVLGEQSVKSLRGSKME 70

Query: 63  DVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQINDVVI----RVVDELN 117
           DV   GS +      A V  +   +  ++ L+ ++    R +  +        R +  L 
Sbjct: 71  DVIFSGSSARRPVGMAEVSLVFDNSAGTLPLDFQEVTITRRVYRDGESQYYINRSLCRLR 130

Query: 118 KHLRISWLVPS------------MDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMI 160
               +     S            +D I +  S ERR  ++ +              +++ 
Sbjct: 131 DIQELFLDTGSGKEGFSIIGQGRIDEILNLKSDERRLLIEEVAGISKYRMRKKEALKKLE 190

Query: 161 DFERLMRGRNRL----------LTEGYFDSSWCSSIEAQMAELGVKINIARVEM----IN 206
           D ++ +   N +          L E    +     +  ++A+  + + +  +E     + 
Sbjct: 191 DTQKNLERLNDIIVEIEGRLEPLKEQAETARLSKELNQELAQTEISVLVCELEQVKNRLQ 250

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            +     E  +K+     K++    +    +     LK+   ++  + R++++ ++
Sbjct: 251 EILDGAEEMQEKKALVLAKIAEHESIHLVKEHDLEKLKQTIQQRQEEIRELENAAQ 306


>gi|262190206|ref|ZP_06048482.1| SMC domain protein [Vibrio cholerae CT 5369-93]
 gi|262033903|gb|EEY52367.1| SMC domain protein [Vibrio cholerae CT 5369-93]
          Length = 396

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           IK L I  F++     +    +  +F+G NG GK+N+LE+I+ LS
Sbjct: 3  HIKRLTIKGFKSIYDQDIDLG-RLNVFIGTNGAGKSNLLESIAMLS 47


>gi|20090030|ref|NP_616105.1| chromosome segregation protein [Methanosarcina acetivorans C2A]
 gi|49036451|sp|Q8TRL1|RAD50_METAC RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|19914999|gb|AAM04585.1| purine NTPase [Methanosarcina acetivorans C2A]
          Length = 1074

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K+K L I   R+Y  L   F+   T+  G NG GK+++LEA      G
Sbjct: 1  MKLKNLYIENIRSYRKLDFTFEDGVTVISGVNGSGKSSLLEACFMGLFG 49


>gi|159186464|ref|NP_395960.2| hypothetical protein Atu5023 [Agrobacterium tumefaciens str. C58]
 gi|159141524|gb|AAK90401.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 577

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/391 (13%), Positives = 120/391 (30%), Gaps = 77/391 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I  FR ++   + F +   + VG N +GK+ +++A+      R     +    
Sbjct: 1   MHLASLKIKNFRRFSETTIKFKSGLNVIVGPNNIGKSAVVDAL------RSLLAGADDPY 54

Query: 65  TRI----------GSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            R           G  S    F  + + ++G  +       R+    +   + +V     
Sbjct: 55  PRFTVDDIHVPKLGEASGDIVFEFIFDDLDGNDEADFIHALREKPDNKLEAVLNVAFGDA 114

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR-GRNRL 172
           D+  +     W            + E       M+  +   +   + D E+ +R  RN  
Sbjct: 115 DKSGRLRPRRWC----------GAFEEVSMSSSMLDNLRSVYLPPLRDAEQGLRPSRNSQ 164

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALS--SLIMEYVQKENFPHIKLSLT 229
           L+           +  +  +  V +++  ++  +  L         V   +   +   L 
Sbjct: 165 LSR------LLHLLTDETGKEEVALHLKDLDAKLKELQVLKDAQSAVSGRHETMLGERLA 218

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSM-SRRTLIGPHRSDLIVDYCDKAITIAHGS 288
             L+     S  +        L D  +++        +      +++    K    +  S
Sbjct: 219 QVLNVGLTGSDFSKLAARLSLLVDTFEIERNGLGYNNLIFMA--VVLSELSKNAEASFRS 276

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG------ 342
                                       L+++E  AHL    +  L + ++ I       
Sbjct: 277 ----------------------------LIVEEPEAHLHPQLQAVLLKYLSSIQNGVGER 308

Query: 343 -SQIFMT--GTDKSVFDSLNETAKFMRISNH 370
             Q+F+T    + +    LN  A    + ++
Sbjct: 309 DVQVFVTSHSPNFASIADLNSIACLYEVDDN 339


>gi|116492590|ref|YP_804325.1| DNA repair ATPase [Pediococcus pentosaceus ATCC 25745]
 gi|116102740|gb|ABJ67883.1| DNA replication and repair protein RecN [Pediococcus pentosaceus
           ATCC 25745]
          Length = 558

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 98/283 (34%), Gaps = 46/283 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +F     L + F+   T+  G+ G GK+ I++A+  L+ GRG      AD  R
Sbjct: 2   LLELSIKDFAIIEKLDVSFNQGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SADFVR 56

Query: 67  IGSP----SFFSTFARVE---------GMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+           A ++         G++   D+ I  E          +IN  ++   
Sbjct: 57  TGADKAVLQGVFDIAEIDNTKNALIKLGIDATNDLVITRELHKGGRS-VCRINGTIVNLN 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLS--MERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            +  + + L           + +          F ++MV  +  ++     D+ +L +  
Sbjct: 116 SLKSVGETLIDIHGQNEHQELMNSEKHLALLDHFDEKMVGKVRAKYEEAYADYSKLNQQL 175

Query: 170 NRLLTEGYFDSSWCSSIEAQ---------MAELGVKINIARVEMIN------ALSSLIME 214
           N+     +  +     ++ Q         MA    ++   R ++ N      ALS+    
Sbjct: 176 NKSRKNEHEWNQRVDMLQFQVEEIKSANLMAGEDEELEKRRDQLNNFQSISDALSTSFQL 235

Query: 215 YVQKENFPHI--------KLSLTGFLDGKFDQSFCALKEEYAK 249
              ++    I        +L      D ++ Q    ++  Y  
Sbjct: 236 LEGEDGASAIDQIGSVMQELQSISDYDDEYQQVSDEVQSAYYA 278


>gi|332295829|ref|YP_004437752.1| SMC domain protein [Thermodesulfobium narugense DSM 14796]
 gi|332178932|gb|AEE14621.1| SMC domain protein [Thermodesulfobium narugense DSM 14796]
          Length = 1059

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 100/274 (36%), Gaps = 24/274 (8%)

Query: 5   IKIKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASY 61
           + ++ L I  F++ Y      FD +  + +G NG GK+NI E+I +   GR    R  S 
Sbjct: 1   MYLQNLRIFGFKSFYKEFIFEFDKKLNVIIGPNGSGKSNIGESIKWALGGRISSIRADSS 60

Query: 62  ADVTRIGSPSF-------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
            ++   G  +F              E  E   +++IK              N  V +   
Sbjct: 61  IELLFSGYKNFKPVNYCEVEINFSDELKENNTELNIKRYMSRGGINNYYVNNVEVQKK-- 118

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           ++   LR   L  ++  I    +++  + L+     +       +  +      +  L +
Sbjct: 119 QMTDILRPLGLGSTLFLIIDQGTVD--KILNLNSDQLCQIFLESLG-YGNYKAEKAELES 175

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           +         +   ++ +   ++ +   ++   +  + +E   K +    +L    + + 
Sbjct: 176 KILEKEEQIETFNLELKKNKSRLEVLYKDL--KIYDIYVEISNKIDLLKKELVFREYNEL 233

Query: 235 K-----FDQSFCALKEEYAKKLFDGRKMDSMSRR 263
           K      ++    +++E++K L    K +  ++ 
Sbjct: 234 KNEKLNTEKEQIDIEKEHSKLL--NYKKEIENKY 265


>gi|282901659|ref|ZP_06309575.1| DNA repair protein RecN [Cylindrospermopsis raciborskii CS-505]
 gi|281193422|gb|EFA68403.1| DNA repair protein RecN [Cylindrospermopsis raciborskii CS-505]
          Length = 575

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 63/206 (30%), Gaps = 24/206 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L L F     +  G+ G GK+ IL+AI  +  GR       + V R
Sbjct: 2   LLSLRIENFALIDQLELDFGPGLNVLTGETGAGKSIILDAIDAVLGGR-----VSSRVIR 56

Query: 67  IGSPSFFSTFAR----------VEGMEGLAD-----ISIKLETRDDRSVRCLQINDVVIR 111
            G+                    E    L D     IS ++           ++N V++ 
Sbjct: 57  TGTNRAVVEGTFSIAPFLATWLTEQEIDLIDDNSLVISREITASGINIRSRSRVNGVLVN 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERLMR 167
                +   R+  +      +  G S + R +LD      +     +       ++   +
Sbjct: 117 RQIMTSLRDRLVEITAQGQTLQVGQSAQVRDWLDLYGGEDIIQHKQKVSSAYAAYQEAHK 176

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
              +              +  Q+ EL
Sbjct: 177 NLEKRRRSEKERLQQLDLLTYQIQEL 202


>gi|260946677|ref|XP_002617636.1| hypothetical protein CLUG_03080 [Clavispora lusitaniae ATCC 42720]
 gi|238849490|gb|EEQ38954.1| hypothetical protein CLUG_03080 [Clavispora lusitaniae ATCC 42720]
          Length = 1170

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +V  +D Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVEELIIDGFKSYATRTVVTGWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L +N 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNSDKAKSPIGFENSAKISVTRQIILGGTSKYL-VNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    LN    +   + + + +    
Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148


>gi|212639594|ref|YP_002316114.1| chromosome segregation ATPase [Anoxybacillus flavithermus WK1]
 gi|212561074|gb|ACJ34129.1| Chromosome segregation ATPase [Anoxybacillus flavithermus WK1]
          Length = 1186

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 83/292 (28%), Gaps = 49/292 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L    F+++A  + + F    T  VG NG GK+NI +AI ++      +  R A 
Sbjct: 1   MFLKRLEAIGFKSFADRISIDFVPGMTAIVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS S            ++  +    +  +  +   R  R       IN+   R
Sbjct: 61  MEDVIFSGSESRKPLNVAEVTLTLDNSDQFLPLEYEEVSITRRVYRSGDSEFFINNQPCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVF------------- 149
            + ++      S +      I S           + +RR   +                 
Sbjct: 121 -LKDIVDLFMDSGVGREAFSIISQGKVEEILSSKAEDRRTIFEDAAGVLKYKTRKKKAEQ 179

Query: 150 ---------AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINI 199
                             +      ++ +  +  E         + E  +      +++ 
Sbjct: 180 KLNETEDHLQRVQDILHELNQQLEPLKQQASIAKEYLEKKEQLQTYEVGLIVYEIEQLHE 239

Query: 200 ARVEMINAL---SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
               +   L       ME           ++         D+S   L++   
Sbjct: 240 KWEALKKQLALHQQNEMELATTLQKEEAHIAQLRHELTALDESIDGLQQVLL 291


>gi|146318844|ref|YP_001198556.1| chromosome segregation ATPase [Streptococcus suis 05ZYH33]
 gi|146321054|ref|YP_001200765.1| chromosome segregation ATPase [Streptococcus suis 98HAH33]
 gi|253751929|ref|YP_003025070.1| chromosome partition protein [Streptococcus suis SC84]
 gi|253753752|ref|YP_003026893.1| chromosome partition protein [Streptococcus suis P1/7]
 gi|145689650|gb|ABP90156.1| Chromosome segregation ATPase [Streptococcus suis 05ZYH33]
 gi|145691860|gb|ABP92365.1| Chromosome segregation ATPase [Streptococcus suis 98HAH33]
 gi|251816218|emb|CAZ51845.1| putative chromosome partition protein [Streptococcus suis SC84]
 gi|251819998|emb|CAR46158.1| putative chromosome partition protein [Streptococcus suis P1/7]
 gi|292558505|gb|ADE31506.1| SMC protein [Streptococcus suis GZ1]
 gi|319758291|gb|ADV70233.1| chromosome segregation ATPase [Streptococcus suis JS14]
          Length = 1177

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 110/290 (37%), Gaps = 36/290 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKSIEMQGFKSFADKTKVVFDRGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLA---DISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++   G        IK+E    RS      I+   +R
Sbjct: 61  MPDVIFSGTESRKALNYASVVVTLDNSTGFIANKQKEIKVERHIYRSGDSEYLIDGQKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAIFEEAAGVLK--YKTRKKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIE--AQMAELGVKINIARVE-----MINALSSLI 212
             +      L       Y   +    +E  AQ A+  ++++  R E     ++  LS   
Sbjct: 179 SKLAQAQDNLDRLDDIIYELDNQVKPLEKQAQTAKKFLELDGQRKELYLNVLVAQLSLGK 238

Query: 213 MEYVQKE-NFPHIKLSLTGFLDGKFDQSFCAL-KEEYAKKLFDGRKMDSM 260
            +  +KE     +K  LT +   + +     L  +E   +L +  + +  
Sbjct: 239 EKLSEKEAELESVKTELTSYYKQRSELEQENLNLKEKRHRLSEQLEREQA 288


>gi|309800536|ref|ZP_07694687.1| chromosome partition protein smc [Streptococcus infantis SK1302]
 gi|308115847|gb|EFO53372.1| chromosome partition protein smc [Streptococcus infantis SK1302]
          Length = 85

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1  MYLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61 YADVTRIGSPS 71
            DV   G+ S
Sbjct: 61 MPDVIFAGTES 71


>gi|324501246|gb|ADY40556.1| Structural maintenance of chromosomes protein 3 [Ascaris suum]
          Length = 1203

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYA 62
          + IK ++I+ FR+Y    +  F  +H + VG NG GK+N   AI   LS      R+ + 
Sbjct: 1  MYIKEVSITGFRSYLETTVDDFSPRHNVVVGRNGSGKSNFFLAIQFVLSDEFSHLRSDHR 60

Query: 63 D-VTRIGSPSFFSTFARVEGMEGLADISI 90
            +   G+    ST ARVE +    D  I
Sbjct: 61 QGLIHEGTGEKVST-ARVEIVFDNVDRRI 88



 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQI 345
            S G++ +V + +  A           AP  L DEI A LD   R A+  ++ ++   +Q 
Sbjct: 1102 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDAALDAQHRKAVADMIHELSENAQ- 1155

Query: 346  FMTGTDKSVFDSLNETAKFMRI 367
            F+T T ++    L    K+  +
Sbjct: 1156 FITTTFRAEL--LGTAEKYFGV 1175


>gi|307244211|ref|ZP_07526326.1| chromosome segregation protein SMC [Peptostreptococcus stomatis DSM
           17678]
 gi|306492361|gb|EFM64399.1| chromosome segregation protein SMC [Peptostreptococcus stomatis DSM
           17678]
          Length = 1183

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 91/264 (34%), Gaps = 29/264 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++ +   + FD   T  VG NG GK+NI +AI   L     +  R   
Sbjct: 1   MYLKKLELKGFKSFPTKTDIYFDKGVTAVVGPNGSGKSNISDAIRWVLGEQSVKSLRGEK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIR 111
             DV  +G+ S     +      ++  +   DI     +              IN+   R
Sbjct: 61  MEDVIFLGTDSKNQMNYCEVAITLDNSQAEIDIDSDELVIKRRVYRNGESEFYINNKTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          ++ I S     RR+  D        R+++   + E
Sbjct: 121 LKDVRETLLDTGIGKDGYSIIEQGKVEEILSNNPANRRKIFDEACGISKFRYKK--NEAE 178

Query: 164 RLMRGRNRLLTEG----YFDSSWCSSIEAQMAELGVKINIARVEMIN-ALSSLIMEYVQK 218
           R ++  +  L       Y   +    +E Q A+   K      E+    L+  I +  Q 
Sbjct: 179 RNLKKSSDNLARIEDIFYEIENQVKPLERQ-AKKAEKYLEVSQELKKLELNDFIKQTSQM 237

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCA 242
           ++           L+ + D +   
Sbjct: 238 DDLIRDMSDKLAGLEKELDLTESE 261


>gi|289449493|ref|YP_003474967.1| chromosome segregation protein SMC [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184040|gb|ADC90465.1| chromosome segregation protein SMC [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 1197

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K + +  F+++     + F    T  VG NG GK+N+ +AI ++   +     R   
Sbjct: 1   MHLKSIELQGFKSFPERTVIEFHTGMTAIVGPNGSGKSNVTDAIRWVLGEQSVKTLRGNK 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   G+ S    ++A V+      D SI L   +    R L        +IN  + R
Sbjct: 61  MEDIIFAGTQSRRPLSYAEVQINFDNTDSSIDLPYNEVSVTRRLYRSGESEYRINKNLCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +   +                +D + S  S +RRR  +
Sbjct: 121 LRDVIELFMDTGIGRDGYSIIGQGRVDELLSNRSEDRRRVFE 162


>gi|253755370|ref|YP_003028510.1| chromosome partition protein [Streptococcus suis BM407]
 gi|251817834|emb|CAZ55587.1| putative chromosome partition protein [Streptococcus suis BM407]
          Length = 1177

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 58/290 (20%), Positives = 110/290 (37%), Gaps = 36/290 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKSIEMQGFKSFADKTKVVFDRGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLA---DISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++   G        IK+E    RS      I+   +R
Sbjct: 61  MPDVIFSGTESRKALNYASVVVTLDNSTGFIANKQKEIKVERHIYRSGDSEYLIDGQKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAIFEEAAGVLK--YKTRKKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIE--AQMAELGVKINIARVE-----MINALSSLI 212
             +      L       Y   +    +E  AQ A+  ++++  R E     ++  LS   
Sbjct: 179 SKLAQAQDNLDRLDDIIYELDNQVKPLEKQAQTAKKFLELDGQRKELYLNVLVAQLSLGK 238

Query: 213 MEYVQKE-NFPHIKLSLTGFLDGKFDQSFCAL-KEEYAKKLFDGRKMDSM 260
            +  +KE     +K  LT +   + +     L  +E   +L +  + +  
Sbjct: 239 EKLSEKEAELESVKTELTSYYKQRSELEQENLNLKEKRHRLSEQLEREQA 288


>gi|171914180|ref|ZP_02929650.1| Chromosome segregation protein SMC [Verrucomicrobium spinosum DSM
           4136]
          Length = 1328

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L I  F+++A   L  F    T  VG NG GK+N+++AI ++   +  +  R A 
Sbjct: 1   MYLKSLEIHGFKSFADKTLFEFHTGVTGIVGPNGCGKSNVVDAIRWVLGETSAKALRGAE 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
            ADV   G+             T A  E   G+    + +  R  R  R   +IN  + R
Sbjct: 61  MADVIFNGTDKRKPVGMAEVILTLADCEQGLGVDYNEVAMCRRVFRDGRSEYRINGTICR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + +          +D + S    +RR   +
Sbjct: 121 LKDFQELLAGTGIGRSAYSVMEQGKIDMLISAKPEDRRSVFE 162


>gi|147919561|ref|YP_686699.1| chromosome segregation/partition protein [uncultured methanogenic
           archaeon RC-I]
 gi|110622095|emb|CAJ37373.1| chromosome segregation/partition protein [uncultured methanogenic
           archaeon RC-I]
          Length = 1173

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 90/253 (35%), Gaps = 22/253 (8%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + +S F+++A  +++ F    T   G NG GK+NI+++I F   LS  R  R   
Sbjct: 1   MHIKEIELSNFKSFARKVKVPFYDDFTTISGPNGSGKSNIIDSILFCLGLSNSRTMRAEK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+            A V       D  + ++  +    R ++ +D         N   
Sbjct: 61  LTDLI-YSVDGKSPGTAEVTIRFDNVDRELPIDLDEITVTRRIKSSDSGYYSYYYFNDK- 118

Query: 121 RISWLVPSMDRIFSGLSMERRRFLD--RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
                 PS          + R   D   +V   D      M D       R +++ E   
Sbjct: 119 ------PSSLNEIHEQLAKARISQDGYNVVLQGDVTRIISMSD-----TERRKIIDEIAG 167

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK-LSLTGFLDGKFD 237
            + +    +  ++EL  ++   R+E +N + + +   + +      + L    + D K  
Sbjct: 168 TAEFDDKTDKALSEL--EVVRERIERVNIIIAEVEARLSQLKRERDQALLYQSYRDEKIK 225

Query: 238 QSFCALKEEYAKK 250
                L  E  + 
Sbjct: 226 NEGYLLLSELKEA 238


>gi|50286419|ref|XP_445638.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524943|emb|CAG58549.1| unnamed protein product [Candida glabrata]
          Length = 1170

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVEELIIDGFKSYATRTVISDWDPQFNAITGLNGSGKSNILDAICFVLGISSMATVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G      IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNTDKSNTPIGFSEYPKISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
                   L     +   + + + +    
Sbjct: 120 HRAPQQSVLQLFQSVQLNINNPNFLIMQG 148


>gi|209559003|ref|YP_002285475.1| Putative chromosome segregation SMC [Streptococcus pyogenes NZ131]
 gi|209540204|gb|ACI60780.1| Putative chromosome segregation SMC [Streptococcus pyogenes NZ131]
          Length = 1179

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIELEGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A+V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDVIFAGTQNRNPLNYAKVAVILDNSDHFIKTANKEIRVERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216
             +      L       Y   +  + +E Q  +A+  ++++  R ++ ++ L   I    
Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +++      L+        +     +++E+Y K
Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271


>gi|330879783|gb|EGH13932.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 390

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEEAAG--------- 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++      L G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEIGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|114570749|ref|YP_757429.1| condensin subunit Smc [Maricaulis maris MCS10]
 gi|114341211|gb|ABI66491.1| condensin subunit Smc [Maricaulis maris MCS10]
          Length = 1148

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K   L ++ F+++     L  D   T  +G NG GK+N+LEA+ ++   +  +  R   
Sbjct: 1   MKFTQLRLAGFKSFVEPTELRIDPGLTGVIGPNGCGKSNLLEALRWVMGATSAKSLRGDG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI------SIKLETRDDRS-VRCLQINDV 108
             DV   G+ +     F      V+  + LA        ++ +  R  R      +IN  
Sbjct: 61  MEDVIFAGTDARPSRNFAEVVLSVDNADKLAPARFNDADTLDVTRRITRGAGSAYKINGE 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + +     RRR L+
Sbjct: 121 EVRAKDVQLLFMDAGTGANSPALVRQGQISELIASKPQNRRRVLE 165


>gi|293381176|ref|ZP_06627184.1| RecF/RecN/SMC N-terminal domain protein [Lactobacillus crispatus
           214-1]
 gi|290922216|gb|EFD99210.1| RecF/RecN/SMC N-terminal domain protein [Lactobacillus crispatus
           214-1]
          Length = 847

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 59/159 (37%), Gaps = 23/159 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + FD   T  VG NG GK+NI EA+ ++   S  +  R  +
Sbjct: 1   MPLTELVLDGFKSFADKTTIHFDDGITGIVGPNGSGKSNITEAVRWVMGESSAKSLRGTN 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS              F   +         + +  R  RS      IN+  +R
Sbjct: 61  MKDVIFAGSQFRKPLNKAEVTLVFDNKKRELAFNSDQVSITRRILRSGDSEFLINNQQVR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141
           + D     L  S + P+   I S             +RR
Sbjct: 121 MRDVRTLFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158


>gi|12382276|gb|AAG53093.1|AF306547_1 SMC2-1 [Arabidopsis thaliana]
          Length = 1175

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA+  +V  FD       G NG GK+NIL++I F   ++  +  R A
Sbjct: 1   MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          V            G E   +I++  +       + L IN 
Sbjct: 61  NLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            + +     N    +   V +   +    
Sbjct: 120 KLAQPSQVQNLFHSVQLNVNNPHFLIMQG 148


>gi|269836286|ref|YP_003318514.1| chromosome segregation protein SMC [Sphaerobacter thermophilus DSM
           20745]
 gi|269785549|gb|ACZ37692.1| chromosome segregation protein SMC [Sphaerobacter thermophilus DSM
           20745]
          Length = 1183

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 58/158 (36%), Gaps = 18/158 (11%)

Query: 6   KIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASY 61
           ++K L +  F+++A+    VFD   T  +G NG GK+NI EA+ +          R    
Sbjct: 4   RLKRLELHGFKSFATPTTFVFDPGITAIIGPNGSGKSNIAEAVRWALGEQSYASLRGRRT 63

Query: 62  ADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSV-RCLQINDVVIRV 112
            DV   GS +            ++   G   +    I +  R  RS      IN   +R+
Sbjct: 64  EDVIFAGSAARAPLGMAEVSLTLDNESGDLPLPFSEITITRRAYRSGENQYFINGARVRL 123

Query: 113 VDEL-----NKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            D L                 +D + S    ERR   +
Sbjct: 124 KDVLQVTASLGQAYTVIGQGLVDAVLSQRPEERRGLFE 161


>gi|291279725|ref|YP_003496560.1| chromosome segregation protein SMC [Deferribacter desulfuricans
           SSM1]
 gi|290754427|dbj|BAI80804.1| chromosome segregation protein SMC [Deferribacter desulfuricans
           SSM1]
          Length = 1122

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 26/166 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K + L +  F+++     + F    T  VG NG GK+NIL+AI ++   +     R  S
Sbjct: 1   MKFRKLILQGFKSFVDKTVIEFPDGITCIVGPNGSGKSNILDAIRWVFGEQSPKELRGDS 60

Query: 61  YADVTRIGSPS-----------FFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS +             S  A    E    L++ISI  +       R   IN 
Sbjct: 61  MDDVIFAGSENRKPSGYCEVTLVVSDVAEHIAEKWGTLSEISITRKYY-RTGEREYLING 119

Query: 108 VVIRVVD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLD 145
              R+ D      +     R   ++    +++I      E R F D
Sbjct: 120 KKCRLKDIRELFYDTGIGARSISIIEQGKVEKIIQASPEEMRLFFD 165


>gi|218291548|ref|ZP_03495422.1| chromosome segregation protein SMC [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218238643|gb|EED05868.1| chromosome segregation protein SMC [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 1190

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 99/283 (34%), Gaps = 29/283 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K ++I  F+++A   ++V     T  VG NG GK+NI +A+ ++   +     R + 
Sbjct: 1   MYLKQIDILGFKSFADKTQIVLSPGITAIVGPNGSGKSNIADALRWVLGEQSVRNLRGSK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS      +       ++  +    ++ +  T   R+ R       IN    R
Sbjct: 61  MEDVIFAGSELRKATNLCEVSITLDNTDHHLPVTFEEVTITRRAFRSGESEYWINRQPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ + S    +RR   +     +    + R  + E
Sbjct: 121 LKDIHELFMDTGLGREAYSIIGQGKIEEMLSTRPEDRRGPFEDAAGIVK--FKHRRKEAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +      L          + +EAQ+  L     IA  E   ALS  I E         
Sbjct: 179 RKLEETAANLVRV---DDILAELEAQLGPLAEARRIA--ERYQALSDEIEETEIALLVVE 233

Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
           I +L        +      A + E  ++L    +     R+ L
Sbjct: 234 IDRLHERYEQLKRQVAREEAARNEAQERLRLSEEAWKARRQAL 276


>gi|239826586|ref|YP_002949210.1| chromosome segregation protein SMC [Geobacillus sp. WCH70]
 gi|239806879|gb|ACS23944.1| chromosome segregation protein SMC [Geobacillus sp. WCH70]
          Length = 1187

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L+I  F+++A  + + F    T  VG NG GK+NI +AI ++      +  R A 
Sbjct: 1   MFLKRLDIIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS S            ++  +    +    + +  R  RS      IN    R
Sbjct: 61  MEDIIFAGSDSRKPLNVAEVTITLDNEDQFLPLDYQEVSITRRVYRSGESEFFINKQPCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|331019823|gb|EGH99879.1| putative conjugative transposon DNA recombination protein
          [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 553

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP----GRGF 56
          + I+ L +  F+ +      F+    IFVGDN  GK+ ILEA+  +      GR F
Sbjct: 1  MLIESLRLINFKKFKDQTFDFNEDVNIFVGDNNAGKSTILEALEIVLNSQYRGRSF 56


>gi|257793002|ref|YP_003186401.1| SMC domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479694|gb|ACV60012.1| SMC domain protein [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 514

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 93/275 (33%), Gaps = 28/275 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRASYA 62
           +KI  + +  FR++      F    T+  G NG GK+ + EA+ +   G     R+    
Sbjct: 1   MKILSIQLENFRSFTEASFQFHD-ITVISGHNGAGKSTLAEAVVWCLFGTDIAGRQKQDE 59

Query: 63  DVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            + R+G      +    + G   +        TR  R    L +N        ++     
Sbjct: 60  KLMRLGEKRMAVTVTWLIHGKSVVIS-----RTRASRQGSTLLVNGKRA-QPGQIEGWFG 113

Query: 122 IS-----WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
                    VP      S    E +  L R V  I       +     +    + L  + 
Sbjct: 114 TVQEFLSVFVPGYFS--SLEPKEAKTVLSRCVPDIPKE--DVLARMTSV--HASMLARDQ 167

Query: 177 YFDSSWCSSIEAQMAELGVKI---NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
           +       SIE  M ++  +I      R+ +     +      + E  P++  S+T    
Sbjct: 168 FV--MGLDSIEFAMQKVRDEIKECEAERLRLEGQCQAYQAVLRRGEPQPYV-PSVTDEER 224

Query: 234 GKFDQSFCALKE-EYAKKLFDGRKMDSMSRRTLIG 267
            +++ +   L E E ++     R  D  +RR  +G
Sbjct: 225 ARYEAAKRELMELEASQGNRKERLRDLYARRDSLG 259


>gi|15241831|ref|NP_201047.1| SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2); transporter
           [Arabidopsis thaliana]
 gi|146325733|sp|Q9C5Y4|SMC21_ARATH RecName: Full=Structural maintenance of chromosomes protein 2-1;
           Short=AtSMC2-1; AltName: Full=Chromosome-associated
           protein E-1; Short=AtCAP-E1; AltName: Full=Protein TITAN
           3
 gi|10178072|dbj|BAB11491.1| chromosome assembly protein homolog [Arabidopsis thaliana]
 gi|332010222|gb|AED97605.1| structural maintenance of chromosomes protein 2-1 [Arabidopsis
           thaliana]
          Length = 1175

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA+  +V  FD       G NG GK+NIL++I F   ++  +  R A
Sbjct: 1   MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          V            G E   +I++  +       + L IN 
Sbjct: 61  NLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            + +     N    +   V +   +    
Sbjct: 120 KLAQPSQVQNLFHSVQLNVNNPHFLIMQG 148


>gi|67924337|ref|ZP_00517770.1| GTP-binding [Crocosphaera watsonii WH 8501]
 gi|67853823|gb|EAM49149.1| GTP-binding [Crocosphaera watsonii WH 8501]
          Length = 1221

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + +K + +S F+++  +  + F    T+  G NG GK+NIL+A+ F   L+  +G R   
Sbjct: 2  VHVKRIELSHFKSFGGTTAIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61

Query: 61 YADVTRIGSPS 71
            D+      S
Sbjct: 62 LPDLINHNHSS 72


>gi|296328619|ref|ZP_06871136.1| conserved hypothetical protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154218|gb|EFG95019.1| conserved hypothetical protein [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 602

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/414 (16%), Positives = 142/414 (34%), Gaps = 67/414 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L +  FR Y     V     T FVG N VGK+ ILEA+        F        
Sbjct: 1   MKLKQLKLKNFRGYKEENYVEFENLTAFVGKNDVGKSTILEALEI------FFNNKTVQC 54

Query: 65  TRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVR---------CLQINDVVIRV 112
            R     +         +  +    DI I L++  + +++          L+I  V    
Sbjct: 55  EREDLSVNHKDEDENIEISCVFSDVDIPIILDSNFETNLKDEYLLNKDGFLEIKKVFKCS 114

Query: 113 VDELNKHLRISWLVPSM----DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           + +   +  I    PS     D +    +  +RR  +  +    P+      ++   +  
Sbjct: 115 IAKPKANSYIVCCYPSEENCKDLLLLKSTELKRRAENLDI----PK-----ENYNASI-- 163

Query: 169 RNRLLTEGYFDS-SWCSSIEAQMA---ELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            N  +    F++ S  + +E  +A   E   KI     E     +    +    ++   I
Sbjct: 164 -NASIRRAIFNNFSDLNLVETDLAVDKEDSKKIFNKLEEYFPMYALFQSDRASSDSDKEI 222

Query: 225 ----KLSLTGFLDGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRT-----LIGP----- 268
               +++++  + G  +     +KEE   K  +   + ++ +          + P     
Sbjct: 223 VDPMQIAISQAIKG-LEVEINKIKEEVKNKTLEIANKTLEKLKEMNSTLADSLIPEFKAE 281

Query: 269 ----HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR--LISNTTGFAPILLLDEI 322
                   L ++  D       GS G ++++L+  F A A   L  N+     I   +E 
Sbjct: 282 PKFDSLFKLSINSDDGIAINKRGS-GVRRLILLNFFRAEAERQLKENSKKNNIIYAFEEP 340

Query: 323 SAHLDEDKR----NALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAKFMRISNHQ 371
                 + +     +  ++      QI +T    ++   L  E+ + ++    +
Sbjct: 341 ETSQHPNHQIMLIESFLKLSQKENCQIILTTHTPALAGMLPLESLRLVKKEEGK 394


>gi|117306688|gb|AAI26824.1| SMC1A protein [Bos taurus]
          Length = 176

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 10/126 (7%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTR---IGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     +G P+    F   V   EG  D +         S    +IN+ V+  + E ++ 
Sbjct: 64  LIHGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSE--YKINNKVV-QLHEYSEE 120

Query: 120 LRISWL 125
           L    +
Sbjct: 121 LEKLGI 126


>gi|330794012|ref|XP_003285075.1| hypothetical protein DICPUDRAFT_148904 [Dictyostelium purpureum]
 gi|325084998|gb|EGC38414.1| hypothetical protein DICPUDRAFT_148904 [Dictyostelium purpureum]
          Length = 1122

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 81/222 (36%), Gaps = 24/222 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           I  + ++ F  Y+ +      +  + +G NG GK++I+ AI+ L  G       R+    
Sbjct: 70  IVRIKLNNFVTYSDVEFRPGPRLNVVIGPNGSGKSSIVCAIA-LGLGGSPNLLGRQKQLG 128

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH--L 120
           D  + G+ S F     +   +G   I IK + + + +    ++N   I   D L +   L
Sbjct: 129 DFVKRGTMSGFVEI-ELFNPDGENFI-IKRDLKKEGNSGDFKLNGKNITKADLLARIKEL 186

Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRM-VFAIDPRHRRRMIDFERLMRGRNRLLT 174
            I        +P    +           L+      +D  +     + + L++ R+    
Sbjct: 187 NIQVENLCQFLPQDKVVGFASMSPTELLLETEKAIGVDNMY----ENHQELIKLRSDSSK 242

Query: 175 EGYFDSSWCSSIEA-----QMAELGVKINIARVEMINALSSL 211
           +     S    +E      Q  E  V+    R +++  + S 
Sbjct: 243 DNQNIDSQRQQLEEKKDLNQQLERDVERFREREKILEEIESY 284


>gi|229829000|ref|ZP_04455069.1| hypothetical protein GCWU000342_01085 [Shuttleworthia satelles DSM
           14600]
 gi|229792163|gb|EEP28277.1| hypothetical protein GCWU000342_01085 [Shuttleworthia satelles DSM
           14600]
          Length = 1186

 Score = 58.8 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 21/166 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I  F+++A+ + L F    T  VG NG GK+N+ +A+ ++      R  R AS
Sbjct: 1   MYLKSIEIHGFKSFANKIVLDFHKGITAIVGPNGSGKSNVSDAVRWVLGEQSARQLRGAS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+ +     +      ++  +    +  K  T   R  R       +N    R
Sbjct: 61  MQDVIFAGTQNRKALGYAYVAITLDNSDQALPVDYKELTVARRVYRSGESEYLLNGTPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149
           + D         + K          +++I SG   ERR   D  V 
Sbjct: 121 LRDVNELFFDTGIGKEGYSIIGQGQIEKILSGKPEERRELFDEAVG 166


>gi|282899440|ref|ZP_06307407.1| Chromosome segregation protein SMC [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195704|gb|EFA70634.1| Chromosome segregation protein SMC [Cylindrospermopsis raciborskii
           CS-505]
          Length = 1193

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 78/237 (32%), Gaps = 51/237 (21%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + ++ F+++  +  +      T+  G NG GK+NIL+A+ F   LS  +G R   
Sbjct: 2   VHIKRVELTNFKSFGGTTSVPLLPGCTVISGPNGSGKSNILDALLFCLGLSSSKGMRADK 61

Query: 61  YADVTRIGS--------PSFFSTFARVEGMEGLADISIKLETRDDRSV----------RC 102
             D+              +  +    +  M    +++ ++      +           R 
Sbjct: 62  LPDLVNNNQTAKGRNSVEAIVTVTFDISDMVSPPEVTEEVTQNGQENKSPTLTQWSVTRR 121

Query: 103 LQINDV-----------VIRVVDELNKHLRISWLVPSMDRIFSGLS---------MERRR 142
           L++N                 + EL++ L    + P    +               ERR 
Sbjct: 122 LRVNSQGSYTSNYYINGSSCTLTELHEELERLRIYPEGYNVVLQGDVTSIISMNGKERRE 181

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199
            +D +           +  ++R +      L E       C  IE ++     ++  
Sbjct: 182 IIDELAG---------VAAYDRKINQAKGTLEEVKEKEDSCRIIEGELIAQRDRLYQ 229


>gi|170077736|ref|YP_001734374.1| chromosome segregation protein SMC [Synechococcus sp. PCC 7002]
 gi|28375561|emb|CAD66604.1| SMC protein [Synechococcus sp. PCC 7002]
 gi|169885405|gb|ACA99118.1| chromosome segregation protein SMC [Synechococcus sp. PCC 7002]
          Length = 1209

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/387 (15%), Positives = 119/387 (30%), Gaps = 70/387 (18%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + +S F+++  ++ +      T+  G NG GK+NIL+ I F   L+  +G R   
Sbjct: 2   VHIKQIELSHFKSFGGTVAVPLRPGFTVVSGPNGSGKSNILDGILFCLGLASSKGMRAER 61

Query: 61  YADVTRI------GSPSFFSTFA---------------------RVEGMEGLADISIKLE 93
             D+         G+     +                                D ++  +
Sbjct: 62  LPDLINHKHSQGKGAAETVVSVTFDLSDLAQQYQTEATEASELKEFLAQFQSHDWTVTRK 121

Query: 94  TRDDRSV---RCLQINDVVIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERR 141
            R  +S        IND       EL++ L    + P          + RI +    ERR
Sbjct: 122 LRVTKSGSYASTYYINDQPC-TATELHEQLNRLRIYPEGYNVVLQGDVTRIITMNGRERR 180

Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
             +D +           + +F+R +      L         C  I  ++     K+   R
Sbjct: 181 EIIDELAG---------VAEFDRKITQTRETLNAVKEREEKCHIIRQELERNLEKLADDR 231

Query: 202 V--EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
           +  E    L   +    Q+E    +        + K  +   +  +E  +   +   +D 
Sbjct: 232 LKAEQYQRLKIDLARQQQEEVL--LTWRSLQLQEEKLQRDLASSAQERTQLTQNLNALDG 289

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
              +T       +  V    +   ++  S            LA  +   +  G     L 
Sbjct: 290 EIFQTGQTLESLNAKVKALGEDEQLSVAS-----------KLATQKAKRHQWGQRQTELE 338

Query: 320 DEISAHLDEDKRNALFRIVTDIGSQIF 346
           ++    L   ++  L   V     Q+ 
Sbjct: 339 EDQRRSLQLHRQ--LLETVQVNQQQLL 363


>gi|56964062|ref|YP_175793.1| chromosome segregation protein SMC [Bacillus clausii KSM-K16]
 gi|56910305|dbj|BAD64832.1| chromosome segregation protein SMC [Bacillus clausii KSM-K16]
          Length = 1188

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 107/304 (35%), Gaps = 42/304 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A  + + F    T  VG NG GK+NI +A+ ++      R  R A 
Sbjct: 1   MFLKRLEVKGFKSFAEPILVDFVPGVTAVVGPNGSGKSNIADAVRWVLGEQSARSLRGAK 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             D+   GS S      A V  +    D  + ++  +    R L         IN    R
Sbjct: 61  MEDIIFAGSDSRKAVNMAEVSLILDNEDGHLAIDYSEVSVTRRLYRSGESEYLINRHSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ I S  + ERR   +           +      
Sbjct: 121 LKDIVDLFLDSGLGREAYSIIGQGKIEEILSSKAEERRTIFEEAAGV-----LKYKTRKN 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA----------RVEMINALSSLIM 213
           + ++   +        +   + +E Q+  L  + +IA          R   I  ++  I 
Sbjct: 176 KAVKRLEQTEENLVRVADILNELEEQVEPLREQASIAEEYKLLAEEQRTLDIQVIAQEIT 235

Query: 214 EYVQKENFPHIKL-SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
           E  +       KL +L   L  + D       E+  +KL   R+  +  R+T    H+  
Sbjct: 236 ELYENWTAESDKLKTLKEQLQARKDS-----LEKAEEKLASYREEHAAIRQTAADLHKKR 290

Query: 273 LIVD 276
           L V 
Sbjct: 291 LEVS 294


>gi|15643938|ref|NP_228987.1| chromosome segregation SMC protein, putative [Thermotoga maritima
           MSB8]
 gi|4981731|gb|AAD36257.1|AE001774_14 chromosome segregation SMC protein, putative [Thermotoga maritima
           MSB8]
          Length = 1170

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++K L +  F+++    L  F  + T  VG NG GK+NI++AI ++   +     R + 
Sbjct: 1   MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASE 60

Query: 61  YADVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             D+   GS +     S +  +   E   +I++  E +         +N   +R+ D
Sbjct: 61  KFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELK-RTGENTYYLNGSPVRLKD 116


>gi|229168918|ref|ZP_04296635.1| DNA repair protein recN [Bacillus cereus AH621]
 gi|228614510|gb|EEK71618.1| DNA repair protein recN [Bacillus cereus AH621]
          Length = 583

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 104/277 (37%), Gaps = 51/277 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110
            G+                   A+ E ++   +  + +  RD         ++N  ++  
Sbjct: 61  YGTEKAEIEGLFYVEDDKHPCIAKAEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTL 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164
            ++ E+ K L           + +    ER  F+      +R+V  +   ++    D+E+
Sbjct: 121 SILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGNRIVKQLG-VYQNVYTDYEK 176

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L +     L          S  E QMA         R+++I      I +   K +    
Sbjct: 177 LKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKMD-EEY 216

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +L+        F++ + AL + Y     DG+ +D + 
Sbjct: 217 ELTEERLKISNFEKIYKALGDAYRSLSGDGQGLDHVR 253


>gi|222100368|ref|YP_002534936.1| Condensin subunit Smc [Thermotoga neapolitana DSM 4359]
 gi|221572758|gb|ACM23570.1| Condensin subunit Smc [Thermotoga neapolitana DSM 4359]
          Length = 1170

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++K L +  F+++    L  F  + T  VG NG GK+NI++AI ++   +     R + 
Sbjct: 1   MRLKKLFLKGFKSFGRPSLITFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASE 60

Query: 61  YADVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             D+   GS +     S +  +   E   +I++  E +         +N   +R+ D
Sbjct: 61  KFDMIFSGSENLPPAGSAYVELVFEENGEEITVARELK-RTGENTYYLNGSPVRLKD 116


>gi|126334861|ref|XP_001374808.1| PREDICTED: similar to SMC2 protein [Monodelphis domestica]
          Length = 1197

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 18/123 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       R L IN 
Sbjct: 61  NLQDLVYKNGQAGITKATVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNRYL-ING 119

Query: 108 VVI 110
           V  
Sbjct: 120 VNA 122


>gi|330832995|ref|YP_004401820.1| chromosome partition protein [Streptococcus suis ST3]
 gi|329307218|gb|AEB81634.1| chromosome partition protein [Streptococcus suis ST3]
          Length = 1177

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 108/281 (38%), Gaps = 31/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKSIEMQGFKSFADKTKVVFDRGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLA---DISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++   G        IK+E    RS      I+   +R
Sbjct: 61  MPDVIFSGTESRKALNYASVVVTLDNSTGFIANKQKEIKVERHIYRSGDSEYLIDGQKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAIFEEAAGVLK--YKTRKKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIE--AQMAELGVKINIARVE-MINALSSLIMEYV 216
             +      L       Y   +    +E  AQ A+  ++++  R E  ++ L + ++   
Sbjct: 179 SKLAQAQGNLDRLDDIIYELDNQVKPLEKQAQTAKKFLELDGQRKELYLDVLVAQLLLGK 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           +K +    +L         + +    L++E  + L + R  
Sbjct: 239 EKLSEKEAELESVKTELTSYYKQRSELEQE-NQNLKEKRHR 278


>gi|299537771|ref|ZP_07051060.1| DNA repair protein recN [Lysinibacillus fusiformis ZC1]
 gi|298726750|gb|EFI67336.1| DNA repair protein recN [Lysinibacillus fusiformis ZC1]
          Length = 563

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 89/272 (32%), Gaps = 35/272 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I  F     L + F    T+  G+ G GK+ I++A+  L+ GRG       +  R
Sbjct: 2   LRELSIRNFAIIEDLTVSFLEGLTVLTGETGAGKSIIIDAVHLLAGGRG-----NTEFIR 56

Query: 67  IGS-----PSFFSTFARVE---------GMEGLADISIKLETRDDRSVRCLQINDV--VI 110
            G+        F   + V          G+E   D  I     +D      ++N     +
Sbjct: 57  HGARKAELGGLFQISSSVHPVLKKLEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPL 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            V+ ++   L           +           +F +  +  I   +R +  ++  L + 
Sbjct: 117 SVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQKNYRAQYDEYRLLKKD 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMI--NALSSLIMEYVQ 217
              +  +    +      + QM EL           ++   R  ++  N +        +
Sbjct: 177 LASISIDEQLMAQRIDLYQFQMKELDEANLKLGEEDELLDERRRLMNFNKIFERSSAAYE 236

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
                   L   G   G  + +   + E++ +
Sbjct: 237 AIQGETKGLDWIGTAMGALEDA-ATVDEQFKE 267


>gi|301311842|ref|ZP_07217764.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|300829944|gb|EFK60592.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 472

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 113/365 (30%), Gaps = 42/365 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + +  FRNY    +  + ++T+ +G N VGKTN++ A+  L      R  S  D 
Sbjct: 1   MILADITLKGFRNYKDAHIKLE-KNTLIIGANDVGKTNLIWAMRLLLD----RSLSDYD- 54

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND---VVIRVVDELNKHL 120
               S  F+        +  L    I  E    +   +    N+         D     +
Sbjct: 55  IEPRSSDFYVLEETNSFVILLHFTDITEECVLSKLRGKISDANEMYMSYNASRDPNTGKI 114

Query: 121 RISWLVPSMDRIFSG-LSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRNRLLTEGYF 178
             +    +   + S   +   R++L+        ++     D +  + + RN L      
Sbjct: 115 SYTIKAGASVELLSDIEAHYYRKYLNI-------KYISCRRDLYAFISKERNFLFQNAKE 167

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
             S     E                ++  + + + E        H     T  ++ +  +
Sbjct: 168 SRSTQEEEED-------------NTLLQEIKTKLQEANNLIPTLHYISKATNSINSELKE 214

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                  +      +   +D     T +    +D  V+                  + + 
Sbjct: 215 MSIYNNNQDVYFDTNSSNIDKFIDSTSVSSKTNDTPVNIGGDGRLNQ---------IYLS 265

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-QIFMTGTDKSVFDS 357
           ++     +         I+ ++E  AHL   ++  L   +++    QIF+T     +   
Sbjct: 266 LWATKHEIERPKLEEVSIVCIEEPEAHLHPHQQQKLATYLSNKICGQIFLTSHSPQITSE 325

Query: 358 LNETA 362
            +  +
Sbjct: 326 FSPNS 330


>gi|284045052|ref|YP_003395392.1| ATPase-like protein [Conexibacter woesei DSM 14684]
 gi|283949273|gb|ADB52017.1| ATPase-like protein [Conexibacter woesei DSM 14684]
          Length = 416

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/385 (12%), Positives = 128/385 (33%), Gaps = 56/385 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYAD 63
           ++ ++I  F++   + L    +  +  G N  GK+N+L+A   L+     R    A  + 
Sbjct: 2   LQRIHIRGFKSLVDVELEL-PRLAVLAGPNAAGKSNVLDAFQMLARSGTQRTLADALDSP 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +    + +F      +  +        ++E         + I+    R + E  ++    
Sbjct: 61  IRGFPTEAFTFPSGGLAELMVQNSARFEIEA-------DVAIDRADTRALLERVRYRLGV 113

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL-----LTEGYF 178
            + P    +        R   D           R     +R++  R+       L E   
Sbjct: 114 EIDPDTGVLALADEYLARLTKDWQP----KDSARIEAQDDRILIRRSGSGGRPPLEERAT 169

Query: 179 DSSWCSSIEAQMA--------ELGVKINIARVEMINALSSLIMEYVQKE------NFPHI 224
           + +W S  +A+++         L  +    R   ++  +++      +E      N  H+
Sbjct: 170 NHTWLS--DARLSGTPYPLFDSLRAEFRQWRTYYLDPGTTMRAAAPPREVPDIGVNGEHL 227

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
              L   L  +   +F A+       +       +D  ++R  +     D+ ++      
Sbjct: 228 APFL-YGLKTRNGPAFEAVHRALKSVIPAIGSLDVDLDTKRGTL-----DIQIEQDGTTF 281

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI- 341
           +    S G  +V+ +             T  + ++  +E    +   + + +  ++  + 
Sbjct: 282 SSRVVSEGTLRVLALCAI--------AVTARSGLVAFEEPENGVQPQRLDRIAELLASVT 333

Query: 342 ---GSQIFMTGTDKSVFDSLNETAK 363
               +Q+ +T        ++ E A+
Sbjct: 334 RRGSAQLVVTTHSPGFVAAILERAR 358


>gi|255692105|ref|ZP_05415780.1| putative RecF/RecN/SMC N domain protein [Bacteroides finegoldii
          DSM 17565]
 gi|260622203|gb|EEX45074.1| putative RecF/RecN/SMC N domain protein [Bacteroides finegoldii
          DSM 17565]
          Length = 364

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          IK + I  F++  +  L       +F+G NG GK+NILEA+  ++  R
Sbjct: 2  IKTITIKNFKSITAADLPLG-NVNVFIGANGSGKSNILEAVGMVAAER 48


>gi|268531032|ref|XP_002630642.1| Hypothetical protein CBG02311 [Caenorhabditis briggsae]
 gi|187037518|emb|CAP24184.1| CBR-SMC-5 protein [Caenorhabditis briggsae AF16]
          Length = 1074

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 91/266 (34%), Gaps = 25/266 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           +  +    F  Y     +  A   + +G NG GK++I+  I  L+ G       R     
Sbjct: 22  LLRVVFHNFLTYEHTSFIPTASLNMILGHNGSGKSSIICGIC-LACGGSPKTLGRSEKIT 80

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           +  R G    +      + ++G   + + +        + L  +      +++L KH  I
Sbjct: 81  EYIRHGCQEGYVEVVIADNVKGPQTVRLTIRVGKAPEYK-LNNSHATQSDINDLRKHYNI 139

Query: 123 SWLVPSMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRMIDFERL----MRGRNRLLTEG 176
               P               FL  D++    +      + + E+     +  R+R L E 
Sbjct: 140 QIDNP-------------CAFLAQDKVKSFSEQSSIELLKNTEKAASDDLDQRHRSLMEQ 186

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
             DS     + A   +    +   R +++  + +   +   +     ++  +      + 
Sbjct: 187 RKDSMTIEELCATSEKAKKHLEDTRTKIMPLVENYRKKMALESKLRLLEKKMACMEFQEA 246

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSR 262
           D+ +   ++     L + RK+++  +
Sbjct: 247 DEEYAKEQKIADNALVEYRKVEAKIK 272


>gi|333030699|ref|ZP_08458760.1| hypothetical protein Bcop_1586 [Bacteroides coprosuis DSM 18011]
 gi|332741296|gb|EGJ71778.1| hypothetical protein Bcop_1586 [Bacteroides coprosuis DSM 18011]
          Length = 522

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  + +  F+ + +L L F+    IFVGDN  GK+ IL+AI  ++ G
Sbjct: 4  ITKIKLHNFKRFKNLTLDFNPDINIFVGDNESGKSTILQAIDLVARG 50


>gi|326430011|gb|EGD75581.1| SMC2 protein [Salpingoeca sp. ATCC 50818]
          Length = 1212

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + I  + I  F++YA   +   FD       G NG GK+NIL+AI F   +S     R +
Sbjct: 1   MFISEIIIDGFKSYAQRTVVSDFDPFFNAITGLNGSGKSNILDAICFVLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          +            G E    I++  +       +   IN 
Sbjct: 61  TLQELIYKQGQAGVTKATVSIVFNNEDKDQSPIGYEQHDTITVTRQIAIGGKNK-YMING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   V +   +    
Sbjct: 120 HNAQQSRVANLFQSVQLNVNNPHFLIMQG 148


>gi|226313208|ref|YP_002773102.1| chromosome partition protein SMC [Brevibacillus brevis NBRC 100599]
 gi|226096156|dbj|BAH44598.1| chromosome partition protein SMC [Brevibacillus brevis NBRC 100599]
          Length = 1190

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A    L F    T  VG NG GK+N+ ++I ++      +  R A 
Sbjct: 1   MYLKRLELAGFKSFADRTELEFVPGVTAVVGPNGSGKSNVSDSIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   GS      +F      ++  +   D+     +   R  R       IN+   R
Sbjct: 61  MEDIIFAGSDKRKPVNFAEVTLTLDNTDRSLDVEYSEVSVTRRVYRSGDSEYYINNRSCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 65/163 (39%), Gaps = 13/163 (7%)

Query: 196  KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK---KLF 252
            +    R + +++  + + E   K+    +   +   +  +F ++F A+ E++     +LF
Sbjct: 996  ERLSERQQFLSSQEADLNE--AKDMLYQVIQEMDAEMSRRFKETFDAISEQFRDVFVQLF 1053

Query: 253  DGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
             G + D +      L+      +      K   +A  S GE+ +  + +  A  R+    
Sbjct: 1054 GGGRADLVLSNPDNLLETGIDIVAQPPGKKLQNLALLSGGERALTAMALLFAILRV---- 1109

Query: 311  TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDK 352
                P  +LDE+ A LDE   N     +    +Q  F+  T +
Sbjct: 1110 -KPVPFCVLDEVEAALDEANVNRFAEYMHHFSNQTQFICVTHR 1151


>gi|222152724|ref|YP_002561901.1| chromosome partition protein [Streptococcus uberis 0140J]
 gi|222113537|emb|CAR41328.1| putative chromosome partition protein [Streptococcus uberis 0140J]
          Length = 1181

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 101/278 (36%), Gaps = 48/278 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ F+   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKTIEMQGFKSFADKTKIEFEKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             D+   G+ S  +  FA V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDIIFAGTESRNALNFAEVAIVLDNSDAFIKDAPKEIRVERHIYRNGDSDYIIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +             ++ ++
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRTIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
              +     LT+   +          ++ Q+  L                + I +     
Sbjct: 172 TRKKETQSKLTQTQDNLDRLEDIIFELDNQVKPL-------------EKQAEIAKKFLHL 218

Query: 220 NFPHIKLSLTGFL-DGKFDQSFCALKEEYAKKLFDGRK 256
           +    +L L   + D + DQ   A KEE   +L +  +
Sbjct: 219 DADRKQLQLDILVEDVQQDQKSMAEKEEDLGQLKENLR 256


>gi|238567301|ref|XP_002386215.1| hypothetical protein MPER_15628 [Moniliophthora perniciosa FA553]
 gi|215437499|gb|EEB87145.1| hypothetical protein MPER_15628 [Moniliophthora perniciosa FA553]
          Length = 74

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
          I+ + + +F  + SL   F       +G NG GK+ +L AI+    G+     R +    
Sbjct: 8  IESIEMHQFMCHKSLSFNFGPNINFIIGHNGSGKSAVLSAITVALGGKTNSTGRGSGLKA 67

Query: 64 VTRIGSP 70
            R G  
Sbjct: 68 FIREGQQ 74


>gi|39996824|ref|NP_952775.1| nuclease SbcCD subunit C [Geobacter sulfurreducens PCA]
 gi|39983712|gb|AAR35102.1| nuclease SbcCD, C subunit, putative [Geobacter sulfurreducens
          PCA]
 gi|298505833|gb|ADI84556.1| DNA repair exonuclease SbcCD, C subunit, putative [Geobacter
          sulfurreducens KN400]
          Length = 813

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++I  +++   +++    L F A   +  G NGVGK+ + EAI +   G
Sbjct: 1  MRILSIHLKNIKSHRDTELTFSAGINVLSGPNGVGKSTVFEAIGYALFG 49



 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 27/180 (15%)

Query: 184 SSIEAQMAELGVKI-----NIARVE----MINALSSLI-MEYVQKENFPHIKLSLTGFLD 233
             + AQ+A LG +I     +  R+E     +  L   I  +  ++ +F   +  +    +
Sbjct: 607 DRLVAQVASLGQQIENLEKDRKRLEDEIGKLKLLKDEIGRKQAERNSFEQKEKLVKFLRN 666

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG----PHRSDLIVDYCDKAI------T 283
             F      L E + +++    + D + R             +  +   D         +
Sbjct: 667 QVFKNVSAQLSERFREEI--SLRADRIYRTIAEADEELVWSENYQIVLRDMTDGVVRERS 724

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
               S G+    +V + LA  + I        I   DE +++LD  +R  L      I  
Sbjct: 725 DDQLSGGQTMSAVVALRLALLQTIGAR-----IAFFDEPTSNLDASRRENLATAFRAIDV 779


>gi|325968969|ref|YP_004245161.1| SMC domain protein [Vulcanisaeta moutnovskia 768-28]
 gi|323708172|gb|ADY01659.1| SMC domain protein [Vulcanisaeta moutnovskia 768-28]
          Length = 803

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 4/113 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA--DV 64
           I  + I  FR+    + V         G NG GKT+ILEAI+    G  + R  Y   D+
Sbjct: 2   ITRVEIENFRSIIRGKAVITEGINFIHGPNGSGKTSILEAIAIALYGSEWVRGKYRLGDL 61

Query: 65  TRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            R G+ S      +  ++G + L   +   E   +     L      +   D 
Sbjct: 62  VRRGASSAIIRVEYLGIDGHKYLIQRAFSTEKTIESQTYILDEGGRRVAARDR 114


>gi|297793811|ref|XP_002864790.1| hypothetical protein ARALYDRAFT_496418 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310625|gb|EFH41049.1| hypothetical protein ARALYDRAFT_496418 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1175

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA+  +V  FD       G NG GK+NIL++I F   ++  +  R A
Sbjct: 1   MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          V            G E   +I++  +       + L IN 
Sbjct: 61  NLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            + +     N    +   V +   +    
Sbjct: 120 KLAQPSQVQNLFHSVQLNVNNPHFLIMQG 148


>gi|296242551|ref|YP_003650038.1| SMC domain-containing protein [Thermosphaera aggregans DSM 11486]
 gi|296095135|gb|ADG91086.1| SMC domain protein [Thermosphaera aggregans DSM 11486]
          Length = 937

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + +  F ++    +VF+      VG NG GK++ILEAI +   G G+R     D+  
Sbjct: 8   LHKITLEGFLSHGETSIVFEKGVNTIVGPNGAGKSSILEAIYYALTGDGWRIRRKEDLVN 67

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
                     ARVE          ++E +       L+
Sbjct: 68  -----LTRRSARVELEFSHEGRKYQVERQIPSGKAVLR 100


>gi|260102298|ref|ZP_05752535.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083895|gb|EEW68015.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 689

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/420 (14%), Positives = 135/420 (32%), Gaps = 82/420 (19%)

Query: 4   RIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------ 56
           ++ I  + I+ FR +   ++  F     I VG N +GKT I+ AI  +     F      
Sbjct: 5   KLFISSVEITNFRTFKEKQIIRFTEGINILVGPNNIGKTTIISAIRLIFDKNKFGLDIND 64

Query: 57  --RRASYADVTR------------------IGSPSFFSTFARVEGMEGLADISIKLETRD 96
             +  +  ++                      S    +    +  ++      I ++ + 
Sbjct: 65  FSKTETKEELKNCSPKITVSVNLQKSNKEGSDSDDLLAIRNWLTDIDNPYKAKITMQFQL 124

Query: 97  DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI-------FSGLSMERRRFLDRMVF 149
                   ++   ++ +D++       WL    + +       F G S +    +D  + 
Sbjct: 125 PTKYEKAYLD--AVKDLDDIGS----VWLELEDEFLPKYQRKYFVGESAQP--LMDNSLS 176

Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFD--SSWCSSIEAQMAELG-VKINIARVEMIN 206
             + ++   + D E+ M   N+ L     +    +      ++ +    K    R +  +
Sbjct: 177 RFNCQYLPAIRDAEKRMNSGNKYLLNKLLNFFIDYDLKSNEELKKSDIEKKMQKRHKDFH 236

Query: 207 ALSSLIMEYVQKENFP--HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
            L+  ++  +           L  +      FD        E+   L D    D +   +
Sbjct: 237 DLAVKLLNNLSPRFKEGKKEMLKYSSQTGATFDGEEP----EFNSALNDH---DILKEFS 289

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR------LISNTTGFAPILL 318
                   L+V   +  + I     G   ++ + + LA  +         + +   P LL
Sbjct: 290 --------LVVKNGESNVPINLNGLGYNNLIYISLVLAELQQSRDNSYFGDNSSVFPFLL 341

Query: 319 LDEISAHLDEDKRNALFRIVT---------DIGSQIFMTG-----TDKSVFDSLNETAKF 364
           ++E  AHL  D +    + +          +   Q+ +T      T  +  D L   +K+
Sbjct: 342 IEEPEAHLHPDMQYDFLKFLQNNIKDGTTSETAKQVIITTHSPNITAAASLDDLIVLSKY 401


>gi|103487751|ref|YP_617312.1| chromosome segregation protein SMC [Sphingopyxis alaskensis
          RB2256]
 gi|98977828|gb|ABF53979.1| Chromosome segregation protein SMC [Sphingopyxis alaskensis
          RB2256]
          Length = 1147

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          ++IK L ++ F+++     L  +   T  VG NG GK+N+LEAI ++   S  +  R   
Sbjct: 1  MQIKRLRLTGFKSFVEPTELRIEPGLTGVVGPNGCGKSNLLEAIRWVMGESSPKSMRGGG 60

Query: 61 YADVTRIGSPS-FFSTFARV 79
            DV   G+ S     FA V
Sbjct: 61 MEDVIFAGTSSRPARDFAEV 80


>gi|300707107|ref|XP_002995776.1| hypothetical protein NCER_101251 [Nosema ceranae BRL01]
 gi|239604988|gb|EEQ82105.1| hypothetical protein NCER_101251 [Nosema ceranae BRL01]
          Length = 871

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 6  KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          KIK L I+ F++Y S   + FD+  T  +G NG GK+NIL+A+ F+   +
Sbjct: 3  KIKSLEITNFKSYKSSHVIPFDSHFTCIIGPNGSGKSNILDAMVFVMTNK 52


>gi|269860020|ref|XP_002649733.1| chromosome segregation protein SMC1 [Enterocytozoon bieneusi H348]
 gi|220066792|gb|EED44263.1| chromosome segregation protein SMC1 [Enterocytozoon bieneusi H348]
          Length = 1062

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 11/146 (7%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASY 61
           +++  + +  F++Y     +    + T  +G NG GK+NIL+AISF +       R  + 
Sbjct: 1   MQLLKIQVRNFKSYKGKHTIGPFDKFTCIIGPNGSGKSNILDAISFATNIELSYLRVNNP 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            ++   G+     +         + ++               +IN+ +I  +   N  L+
Sbjct: 61  LEMISNGATECEVSLF-------IDNLCFTKLFTASHQTYIYKINNKII-PIAIYNNQLK 112

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRM 147
              ++P +           R  LD +
Sbjct: 113 KINILPEIRNFIIYQGTLIRNNLDLL 138


>gi|182415724|ref|YP_001820790.1| chromosome segregation protein SMC [Opitutus terrae PB90-1]
 gi|177842938|gb|ACB77190.1| chromosome segregation protein SMC [Opitutus terrae PB90-1]
          Length = 1301

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 87/261 (33%), Gaps = 37/261 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A    L F+   T  VG NG GK+NI ++I ++      +  R   
Sbjct: 1   MYLKALKLHGFKSFADPTMLRFEPGVTAVVGPNGCGKSNIADSIRWVLGEQSAKALRGGK 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+                  E   G     I++  R  R  +     N    R
Sbjct: 61  MQDVIFEGADTRKPAQMCEVSLLLTECEKQLGSEYHEIEITRRVYRDGQSEYFFNGQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + +          +D I S    ERR   +             +  ++
Sbjct: 121 LKDIQKLFMDTGIGRTSYSIMAQGQIDLILSSKPEERRSVFEEAAG---------ITKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
                R   + +        + +   + E+G +I   R +   A+    + +  +    H
Sbjct: 172 ---SQRREAMNKLALTDQNLARVADVIGEVGRQIGSLRRQASKAMRYKRLSFRLR----H 224

Query: 224 IKLSLTGFLDGKFDQSFCALK 244
           + L+ + +   +   +   L+
Sbjct: 225 LSLAWSAYHHAQLAATLAELE 245


>gi|171780117|ref|ZP_02921021.1| hypothetical protein STRINF_01905 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281465|gb|EDT46900.1| hypothetical protein STRINF_01905 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1179

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/283 (18%), Positives = 105/283 (37%), Gaps = 35/283 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A    + FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEMQGFKSFADKTTIEFDKGVTAIVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+      ++      ++  +G    A  +I++E            I+   +R
Sbjct: 61  MPDVIFAGAENRKPLNYAQVVVSLDNSDGFIKDAKETIRVERHIYRNGDSEYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSVISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVEM-INALSSLIM-E 214
             +      L       Y   S    +E Q A++  +   +   R ++ +N L   I  +
Sbjct: 179 TKLNQTQDNLDRLDDIIYELESQVKPLERQ-AKVAKEFIGLEDERKQLHLNVLVEDIQTD 237

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            V+ ++      S+   L   ++Q      E+  + L + R  
Sbjct: 238 KVRLDSLKEDLASIKSDLSAYYEQ--RQQFEKQNQALKEKRHQ 278


>gi|209886101|ref|YP_002289958.1| chromosome segregation protein SMC [Oligotropha carboxidovorans
           OM5]
 gi|209874297|gb|ACI94093.1| chromosome segregation protein SMC [Oligotropha carboxidovorans
           OM5]
          Length = 1154

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K+  L +  F+++  +   + +   T  VG NG GK+N++EA+ ++   +  +  R A 
Sbjct: 1   MKLTRLRLHGFKSFVEATDFLIEPGLTGVVGPNGCGKSNLVEALRWVMGETSYKSLRAAD 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
              V   G     + +       ++  +  A  S      +++  R +R +    +IN  
Sbjct: 61  MDSVIFSGSGNRPARNHAEVVMSIDNADRTAPSSMNDSELLEVSRRIEREAGSVYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQARPDQRRRVLED 166



 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  +++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1042 GKKPQSLSLLSGGEQALTALALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1096

Query: 338  VTDIGSQI 345
            + ++ SQ 
Sbjct: 1097 LHEMTSQT 1104


>gi|149248992|ref|XP_001528836.1| hypothetical protein LELG_05762 [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146453325|gb|EDK47581.1| hypothetical protein LELG_05762 [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 260

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 4/109 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I+ L +  F  +    L    Q    +G NG GK+ IL  IS     +     R +S  D
Sbjct: 103 IEKLTLKNFMCHDFFELELGPQINFIIGRNGSGKSAILTGISVALGAKANDTNRGSSIRD 162

Query: 64  VTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
           + + G   S  +   + +G           +   +R ++ +  N   I+
Sbjct: 163 LIKDGKSMSRITIVLKNDGSWAYRPEEYGRKIIIERKLQRVGTNSYSIK 211


>gi|328697890|ref|XP_001948837.2| PREDICTED: structural maintenance of chromosomes protein 6-like
           [Acyrthosiphon pisum]
          Length = 1049

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 3/120 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           IK + +  F  +++  L  + +     G NG GK+ I  AI      R     R  S   
Sbjct: 28  IKSITLENFMCHSNFHLSLNPRINFISGLNGSGKSAIQTAIVVGFGARASITNRATSLKS 87

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + + G  S   +       +G +D          + +  ++           LN++ R+ 
Sbjct: 88  LIKYGQTSAAVSITLANSGDGNSDCGPYRPEVYGKQITIVRQITESSTTYKFLNENNRVV 147


>gi|325185009|emb|CCA19500.1| ATSMC2 transporter putative [Albugo laibachii Nc14]
          Length = 1192

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 80/281 (28%), Gaps = 33/281 (11%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + I+ + I  F++YA+  +   FD       G NG GK+NIL+AI F   +S     R  
Sbjct: 1   MHIEEIIIDGFKSYATRTVISGFDPHFNAITGFNGSGKSNILDAICFVLGISNLSQVRAG 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          +            G E    IS+  +       +   IN 
Sbjct: 61  NLQELVYKQGQAGITKATVTIVFDNHNSNASPVGYEQYEQISVARQVIIGGRNK-YMING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
              +V    N    +   V S   +     + +       +  + P     +   E    
Sbjct: 120 HTAQVSQIQNLFHSVQLNVNSPHFLIMQGRITK-------ILNMKP--LEILSMIEEAAG 170

Query: 168 GR------NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
            R         L            I A +AE          +             + E  
Sbjct: 171 TRMYETKKQAALRTMIKKDRKVEEINAILAEEITPTLEKLRQEKQQYLVWAANNTELERL 230

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
               ++           +  A  ++  +     R+ +   +
Sbjct: 231 ERFCIAYKYQKAVDVINTVDANVQQLEQNFESSRQREKKLQ 271


>gi|312887308|ref|ZP_07746910.1| SMC domain protein [Mucilaginibacter paludis DSM 18603]
 gi|311300204|gb|EFQ77271.1| SMC domain protein [Mucilaginibacter paludis DSM 18603]
          Length = 622

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K++ + I  FR      +  + Q  +FVG NG GK+ IL++I
Sbjct: 3  MKLERIEIKNFRGIEDATIELNDQLNLFVGINGSGKSTILDSI 45


>gi|295086863|emb|CBK68386.1| Predicted ATP-dependent endonuclease of the OLD family [Bacteroides
           xylanisolvens XB1A]
          Length = 593

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 68/369 (18%), Positives = 139/369 (37%), Gaps = 43/369 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRG--FRRASY 61
           + +  L+IS+FR +  + L F     I +G+N  GKT I++A+   L  G+   F     
Sbjct: 1   MYLSRLHISKFRVFDDITLYFKNGINILIGENNSGKTAIIDALRICLGCGKPDNFIYVQD 60

Query: 62  ADV-TRIGSPSFFSTFARVEGMEGLADISIKLET--------RDDRSVRCLQINDVVIRV 112
            D+     +PS  +T  + + +    D SI+ E         +D+   + +Q++   I+ 
Sbjct: 61  GDLHVNPENPSEINTVIQFDLIFEFGDASIERECFYDFISQDKDNPDKQTIQLHLKFIQE 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
            +   K+ +         RI  G   E ++     +  I   +   + D           
Sbjct: 121 NNGKKKYFK---------RIIWGGDNEGQQVPYESLQEIFYTYLSPLRD--------AVS 163

Query: 173 LTEGYFDSSWCSSIEAQMAEL--GVKINIARVEMINALSSLIMEYVQKENFPHIKL--SL 228
               Y   +  S +  Q+ +   G +      E   +L+  + +  + + +    +  + 
Sbjct: 164 CLRPYSYDNKTSQLFNQLTKYDKGNESIPLNEEKKKSLAKNLYQIFENDAYDWKHILTTG 223

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRK-MDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
              ++   + +   LK    +  + GR+  D +    L  P    +      K  T++  
Sbjct: 224 KSKVNEHLEGTGITLKHPDIEMRYVGREFSDVVRGIELKCPVYKTVEAGQEQKYFTLSQN 283

Query: 288 STGEQKVVLVGIFLAHARLISN----TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
             GE  ++   + L    LI+            LL++E  AHL    +N  F  + ++ S
Sbjct: 284 GLGENNLIFTSVVL--GDLINRCEDHALEIYNALLVEEPEAHLHPQYQNTFFEYLNELQS 341

Query: 344 ---QIFMTG 349
              Q+F+T 
Sbjct: 342 KGLQVFVTS 350


>gi|258511330|ref|YP_003184764.1| chromosome segregation protein SMC [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478056|gb|ACV58375.1| chromosome segregation protein SMC [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 1190

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 99/283 (34%), Gaps = 29/283 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K ++I  F+++A   ++V     T  VG NG GK+NI +A+ ++   +     R + 
Sbjct: 1   MYLKQIDILGFKSFADKTQIVLSPGITAIVGPNGSGKSNIADALRWVLGEQSVRNLRGSK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS      +       ++  +    ++ +  T   R+ R       IN    R
Sbjct: 61  MEDVIFAGSELRKATNLCEVSITLDNTDHHLPVTFEEVTITRRAFRSGESEYWINRQPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ + S    +RR   +     +    + R  + E
Sbjct: 121 LKDIHELFMDTGLGREAYSIIGQGKIEEMLSTRPEDRRGPFEDAAGIVK--FKHRRKEAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +      L          + +EAQ+  L     IA  E   ALS  I E         
Sbjct: 179 RKLEETAANLVRV---DDILAELEAQLGPLAEARRIA--ERYQALSDEIEETEIALLVVE 233

Query: 224 I-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
           I +L        +      A + E  ++L    +     R+ L
Sbjct: 234 IDRLHDRYEQLKRQVAREEAARNEAQERLRLSEEAWKARRQAL 276


>gi|227904214|ref|ZP_04022019.1| chromosome segregation protein Smc [Lactobacillus acidophilus ATCC
           4796]
 gi|227868233|gb|EEJ75654.1| chromosome segregation protein Smc [Lactobacillus acidophilus ATCC
           4796]
          Length = 1189

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 58/159 (36%), Gaps = 23/159 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + F+   T  VG NG GK+NI EAI ++   S  +  R  +
Sbjct: 1   MPLTELVLDGFKSFADKTVIHFNKGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGTN 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS              F             + +  R  RS      IN+  +R
Sbjct: 61  MKDVIFAGSQYRKPMNKAEVTLIFDNKNRELAFETDQVSVTRRILRSGDSEFLINNQQVR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141
           + D     L  S + P+   I S             +RR
Sbjct: 121 MRDVRTLFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158


>gi|213962847|ref|ZP_03391107.1| ATPase [Capnocytophaga sputigena Capno]
 gi|213954504|gb|EEB65826.1| ATPase [Capnocytophaga sputigena Capno]
          Length = 352

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 61/392 (15%), Positives = 136/392 (34%), Gaps = 68/392 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ------HTIFVGDNGVGKTNILEAISFLS--PGRGF 56
           +KIK + +  ++ +   + +F  +       T+ VG+NG GKT++L+AI  +     R  
Sbjct: 1   MKIKEITLRNYKRFVEQKTIFFHKDGEINDLTLIVGNNGTGKTSLLQAIVMMIAPLTRDH 60

Query: 57  RRASYAD-------VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDV 108
                 D         + G        A ++  E   + ++    R D+   + +  N  
Sbjct: 61  FSVEDIDWSGFEYRFIQSGGRMPLKVEATIDFSEEELEKTLLYAKRIDKYGKKIVFPNKN 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
                      +   +             + R +    +      ++ +++  FE     
Sbjct: 121 K----------MINVFFDYE-----KKKPIVRGKGGGNLFQFFGHQYAKQLTSFE---ID 162

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGV----KINIARVEMINALSSLIMEYVQKENFPHI 224
           +N+L  EG  +  W      Q     V    +  +++++ I +  +    +         
Sbjct: 163 KNKLF-EGVGNIYW---YTEQRTSYSVNNMFEGEVSQLDAIRSFLANAYSFHIAITEGRR 218

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR------KMDSMSRRTLIGPHRSDLIVDYC 278
            L       G+FD  +  + E Y K   D +      + D   + T       D  ++  
Sbjct: 219 TLK-----AGEFDF-YQKISELYGKVFTDRKFVGATPRFDIYEKSTAP-----DFFLNDG 267

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
                ++  S GE+ +  + +  A   +         I+++DEI  HL    + A  R +
Sbjct: 268 KNDYELSEMSAGERAIFPILMDFARYNI------NNSIVIIDEIELHLHAPLQQAFIRAL 321

Query: 339 TDIGS--QIFMTGTDKSVFDSLNETAKFMRIS 368
             +G   Q  +T        ++ E  + ++++
Sbjct: 322 PKLGHNNQFILTS-HSDYVTTMFEENQIIKLN 352


>gi|198283035|ref|YP_002219356.1| chromosome segregation protein SMC [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198247556|gb|ACH83149.1| chromosome segregation protein SMC [Acidithiobacillus ferrooxidans
           ATCC 53993]
          Length = 1150

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 103/319 (32%), Gaps = 56/319 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + +  F+++  S R+ FDA   + +G NG GK+N ++A+ ++   S  R  R  +
Sbjct: 1   MRLSAIILQGFKSFRESTRIQFDANPVVIIGPNGCGKSNTVDAVRWVLGESSARQLRGGT 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLAD----------ISIKLETRDDRSVRC-LQINDV 108
            +DV   G  S   ++ A VE     +D            I +    DR      +IN  
Sbjct: 61  LSDVISNGGGSRPAASVATVELRFDNSDGAAPGAFAGAAEISVRRSLDRKGDGHYRINGA 120

Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLS------MERRRFL 144
             R  D                  E     RI    P   R     +       ERRR  
Sbjct: 121 RCRRRDVADLFLGTGLGGNAYAIVEQGTIGRIVDARPDDLRAILEEAGGISRYKERRRET 180

Query: 145 DRMVFAIDPRHRRRM--------IDFERLMRGR--NRLLTEGYFDSSWCSSIEAQMAELG 194
            + +      H +R+          ++RL R     + L     +          +A   
Sbjct: 181 TQRIAE-TREHLQRLYDIHGEMDGQWQRLQRQAESAQRLRALRVEERQWQWWS--LALRV 237

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHI---KLSLTGFLDGKFDQSFCALKEEYAKKL 251
             +   R + +   S L  EY ++E         L      D +  +   A + E     
Sbjct: 238 DALEAERRQSLEQRSRLQDEYRREERLLDAVTQSLDQLRAEDRRMQEDIAAAQGELYAVQ 297

Query: 252 FDGRKMDSMSRRTLIGPHR 270
                M+   R       R
Sbjct: 298 ARQSDMEHQLREQQAALQR 316



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              +  T+   S GE+ +  + +  A   L       AP  +LDE+ A LD+        +
Sbjct: 1037 GKRNATLQQLSGGEKALTAIALVFALFHL-----NPAPFCILDEVDAPLDDANVGRFCHL 1091

Query: 338  VTDIGSQI 345
            V  + +Q 
Sbjct: 1092 VQKMAAQT 1099


>gi|323496668|ref|ZP_08101719.1| RecF/RecN/SMC family protein [Vibrio sinaloensis DSM 21326]
 gi|323318250|gb|EGA71210.1| RecF/RecN/SMC family protein [Vibrio sinaloensis DSM 21326]
          Length = 542

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 30/44 (68%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
           ++++  L++S FR +  L L FD + T+ +GDNG GKT+  +A+
Sbjct: 62  KLRLNSLSLSNFRRFDDLCLDFDEKLTVIIGDNGAGKTSFADAM 105


>gi|255994581|ref|ZP_05427716.1| DNA repair protein RecN [Eubacterium saphenum ATCC 49989]
 gi|255993294|gb|EEU03383.1| DNA repair protein RecN [Eubacterium saphenum ATCC 49989]
          Length = 545

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 63/195 (32%), Gaps = 16/195 (8%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +++I  + I  F   A + + F     I  G+ G GK+ +  AI     G  F   +   
Sbjct: 3   KMEISKIQIKNFATIAEINIKFAKGLNIITGETGAGKSVLATAI-----GAVFNPRANKS 57

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-----SVRCLQINDVVIRVVDELNK 118
           + R  + +   +    +G        I  ++   R     SV   ++ +    ++    +
Sbjct: 58  LIRNNTDAATISLTFTDGTNNTDIKRIITKSYSKRFIDDASVSATKLAENYNDILHIHGQ 117

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
                 L P               F +  +  +   +      F+   +  N LL +   
Sbjct: 118 FENRDILNPDNHISIIDS------FGENTILPVKNHYNTCYSHFKAAAKELNNLLKKKSE 171

Query: 179 DSSWCSSIEAQMAEL 193
                  ++ Q+ EL
Sbjct: 172 IEQQKDFMQFQLDEL 186


>gi|222528364|ref|YP_002572246.1| SMC domain-containing protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455211|gb|ACM59473.1| SMC domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 427

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/413 (13%), Positives = 134/413 (32%), Gaps = 80/413 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-------RGF- 56
           ++I  + IS F+N  +  + F+   T  VG NG GK+N+L+A+ F +         + F 
Sbjct: 1   MEILKITISGFKNIENTTIEFNHPITAIVGPNGYGKSNLLQALEFGNYFIKSDEIEKSFF 60

Query: 57  --RRA---SYADVTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             R +      ++          F +TF   E +       +         +    +   
Sbjct: 61  MKRPSFIPINKNMINSEFHYEIEFKTTFVEKEVVVNYGYKFMWPSKDIKPLITAEWLKIK 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
                   ++++R +    S          +R    D+ +                 +  
Sbjct: 121 PNEKGKRYSEYIRRT----SDKAFIKPSPKDR---CDKEIK----------------IEN 157

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV--QKENFPHIKL 226
            N ++ +   D            ++   IN   +EMI  +      ++   K N P + +
Sbjct: 158 NNLVINKLKSDDELF------YHKIVNDINKLNIEMITKVLPEFSFHLIPSKGNVPKLTI 211

Query: 227 SLT---------GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS---RRTLIGPHRSD-- 272
             T           L   + + F  L   + +      ++D      +    G  + +  
Sbjct: 212 EETVLFDILPTVYDLKKNYPEKFEYLMNAFKEIFPSIEELDVAEVKPQNIFKGLLKDEEF 271

Query: 273 ----LIVDYCDKAITIAH----GSTGEQKVV--LVGIFLAHARLISNTTGFAPILLLDEI 322
                I+   +K +T +      S G  +++  L  + LA             ++  +E+
Sbjct: 272 VDKIYIMRVKEKNLTKSLDILSLSRGTLRILAFLTSLILA-------DIKGYLLIGFEEL 324

Query: 323 SAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
              +       L  +++++    +I +T     +   L+    ++ + N + +
Sbjct: 325 EDSIHPKLLQKLLMVLSNMSDNCKIIITSHSPYLIQFLDIDNIYLAVPNDKGI 377


>gi|149186058|ref|ZP_01864372.1| chromosome segregation protein [Erythrobacter sp. SD-21]
 gi|148830089|gb|EDL48526.1| chromosome segregation protein [Erythrobacter sp. SD-21]
          Length = 1140

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + IK L +S F+++     L  +   T  VG NG GK+N+LEAI ++      +  R   
Sbjct: 1   MLIKQLRLSGFKSFVEPSTLRIEPGLTGVVGPNGCGKSNLLEAIRWVMGENSPKSMRSGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVVD 114
             DV   G+ S     F       E  +G     +++  R +R      ++N   +R  D
Sbjct: 61  MEDVIFAGTASRPPRDFAEVVLSAEDDDGD---ELEVVRRIERGAGSAYRVNGKDVRAKD 117


>gi|223932806|ref|ZP_03624803.1| chromosome segregation protein SMC [Streptococcus suis 89/1591]
 gi|302023943|ref|ZP_07249154.1| chromosome segregation protein SMC [Streptococcus suis 05HAS68]
 gi|223898515|gb|EEF64879.1| chromosome segregation protein SMC [Streptococcus suis 89/1591]
          Length = 1177

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 108/281 (38%), Gaps = 31/281 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKSIEMQGFKSFADKTKVVFDRGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLA---DISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S     + S    ++   G        IK+E    RS      I+   +R
Sbjct: 61  MPDVIFSGTESRKALNYASVVVTLDNSTGFIANKQKEIKVERHIYRSGDSEYLIDGQKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAIFEEAAGVLK--YKTRKKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIE--AQMAELGVKINIARVE-MINALSSLIMEYV 216
             +      L       Y   +    +E  AQ A+  ++++  R E  ++ L + ++   
Sbjct: 179 SKLAQAQGNLDRLDDIIYELDNQVKPLEKQAQTAKKFLELDGQRKELYLDVLVAQLLLGK 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           +K +    +L         + +    L++E  + L + R  
Sbjct: 239 EKLSEKEAELESVKTELTSYYKQRSELEQE-NQNLKEKRHR 278


>gi|161507713|ref|YP_001577670.1| chromosome segregation protein Smc [Lactobacillus helveticus DPC
           4571]
 gi|160348702|gb|ABX27376.1| Chromosome segregation protein Smc [Lactobacillus helveticus DPC
           4571]
          Length = 1189

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 21/158 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + F+   T  VG NG GK+NI EAI ++   +  +  R  +
Sbjct: 1   MPLTELVLDGFKSFADRTTIHFNDGITGIVGPNGSGKSNITEAIRWVMGEASAKSLRGTN 60

Query: 61  YADVTRIGSP---SFFSTFARVEGMEGLADI-----SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS    S       +       ++      + +  +  RS      IN   +R
Sbjct: 61  MKDVIFAGSQYRKSLNKAEVTLIFDNQKRELAFDADEVSITRKILRSGDSEFLINGQQVR 120

Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERR 141
           + D     L       S+        D+I +    +RR
Sbjct: 121 MRDVRTLFLDSGISQNSLAIISQGRVDQILNSRPEQRR 158


>gi|307945037|ref|ZP_07660373.1| conserved hypothetical protein [Roseibium sp. TrichSKD4]
 gi|307770910|gb|EFO30135.1| conserved hypothetical protein [Roseibium sp. TrichSKD4]
          Length = 426

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/268 (16%), Positives = 81/268 (30%), Gaps = 34/268 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RR 58
           +KI  L+   F+   ++ +  D       G N  GK++IL+AI     G+        R 
Sbjct: 1   MKIVSLSAENFKRLRAVSISPDGNLIELTGGNEQGKSSILDAIWAAICGKSAAPALPIRT 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
                + ++   S   T   +   +G    S+ +E  +              R++D+L  
Sbjct: 61  GEEVAIIKLDLGSLKITRKFINKTDGTTTTSLVVENEEG------HRQSPPQRILDDLTN 114

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP---RHRRRMIDFERLMRGRNRLLTE 175
            L    L  +        S  R    D      D           D  R +      L  
Sbjct: 115 TLSFDPLEFTRLDPKKQSSFLRSLVPDFNFEEADRQIQELMEERRDTNRELAQAKARLEA 174

Query: 176 -GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
               D +    I+                 + +L   + +     +    +LS    LD 
Sbjct: 175 CSVPDDAPNDPID-----------------VASLIESMEKAAASNDMRQQQLSRQRELDQ 217

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSR 262
           +  Q+  A  E Y K++   ++      
Sbjct: 218 Q-KQNAEASIENYRKEIAAAQEQIEKLG 244


>gi|239626497|ref|ZP_04669528.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516643|gb|EEQ56509.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
          Length = 512

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +KI  + I  F+   SL +   A+  I  G NG+GKT++LE I     G+
Sbjct: 8  MKISNIKIMNFKGIESLEVKP-ARINILSGPNGMGKTSMLEGIRCAITGK 56


>gi|58337572|ref|YP_194157.1| chromosome segregation protein Smc [Lactobacillus acidophilus NCFM]
 gi|58254889|gb|AAV43126.1| chromosome segregation protein Smc [Lactobacillus acidophilus NCFM]
          Length = 1189

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 58/159 (36%), Gaps = 23/159 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  L +  F+++A    + F+   T  VG NG GK+NI EAI ++   S  +  R  +
Sbjct: 1   MPLTELVLDGFKSFADKTVIHFNKGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGTN 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS              F             + +  R  RS      IN+  +R
Sbjct: 61  MKDVIFAGSQYRKPMNKAEVTLIFDNKNRELAFETDQVSVTRRILRSGDSEFLINNQQVR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERR 141
           + D     L  S + P+   I S             +RR
Sbjct: 121 MRDVRTLFLD-SGISPNSLAIISQGRVDQILNSRPEQRR 158


>gi|325959297|ref|YP_004290763.1| SMC domain-containing protein [Methanobacterium sp. AL-21]
 gi|325330729|gb|ADZ09791.1| SMC domain protein [Methanobacterium sp. AL-21]
          Length = 815

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 49/104 (47%), Gaps = 11/104 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR----RAS 60
           +K+  L I+ FR   +L++    ++ + +G NG GK+ +++A+ FL  G+  R       
Sbjct: 1   MKVLELEITNFRGIKNLKINPAGKNFMIIGPNGSGKSAVVDAVDFLLTGQISRMTGKGTK 60

Query: 61  YADVTRIG-------SPSFFSTFARVEGMEGLADISIKLETRDD 97
             ++ + G         +      ++ G+E   +I   L++ ++
Sbjct: 61  GINLKKHGPHIDHSPQDAKVRAVVQIHGVEEPIEIQRTLDSPNN 104


>gi|116330711|ref|YP_800429.1| chromosome segregation ATPase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116124400|gb|ABJ75671.1| Chromosome segregation ATPase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 924

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K LNI  F+ +A    ++ D   T  VG NG GK+NI++A+ ++      +G R   
Sbjct: 1   MYLKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGEK 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS +   + +A V  +   +   IK++    +  R L ++ 
Sbjct: 61  MDDVIFHGSEARKPAGYAEVSVVFDNSSRLIKMDYPSVKMTRRLYLDG 108


>gi|238613454|ref|XP_002398446.1| hypothetical protein MPER_00958 [Moniliophthora perniciosa FA553]
 gi|215474997|gb|EEB99376.1| hypothetical protein MPER_00958 [Moniliophthora perniciosa FA553]
          Length = 130

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          + +  + + +F++Y     +      T  +G NG GK+N+++AISF+   +    R +  
Sbjct: 1  MPLVRIEVCDFKSYRGHQTIGPFKNFTSVIGPNGAGKSNLMDAISFVLGVKSAQLRSSQL 60

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 61 KDLVYRG 67


>gi|116328632|ref|YP_798352.1| chromosome segregation ATPase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116121376|gb|ABJ79419.1| Chromosome segregation ATPase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 924

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K LNI  F+ +A    ++ D   T  VG NG GK+NI++A+ ++      +G R   
Sbjct: 1   MYLKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGEK 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS +   + +A V  +   +   IK++    +  R L ++ 
Sbjct: 61  MDDVIFHGSEARKPAGYAEVSVVFDNSSRLIKMDYPSVKMTRRLYLDG 108


>gi|147898636|ref|NP_001081372.1| structural maintenance of chromosomes protein 2 [Xenopus laevis]
 gi|1722856|sp|P50533|SMC2_XENLA RecName: Full=Structural maintenance of chromosomes protein 2;
           Short=SMC protein 2; Short=SMC-2; AltName:
           Full=Chromosome assembly protein XCAP-E; AltName:
           Full=Chromosome-associated protein E
 gi|563814|gb|AAA64680.1| XCAP-E [Xenopus laevis]
          Length = 1203

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 91/262 (34%), Gaps = 28/262 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + I  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHVKSIIIDGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLTQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKATVSITFDNYDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM + +
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     E          +E ++     K+   R   +      IM  ++  +  +
Sbjct: 178 KIAAQKTIEKKEAKLKEIQT-ILEEEITPTIHKLKEERSSYLE--YQKIMREIEHLSRLY 234

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
           +        + K  +S   LKE
Sbjct: 235 VAYQFVCAEETKV-RSAEELKE 255


>gi|326693824|ref|ZP_08230829.1| DNA repair protein RecN [Leuconostoc argentinum KCTC 3773]
          Length = 566

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 101/299 (33%), Gaps = 52/299 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  F     + L F+A  ++  G+ G GK+ I++A+  L+ GR     + +++ R
Sbjct: 2   LENLIIENFAIIEKVNLHFEAGMSVLTGETGAGKSIIIDALLMLTGGR-----ASSEMIR 56

Query: 67  IGSP-----SFFSTFARVEGMEGLADISIKLETR--------DDRSVRCLQINDVVI--R 111
            GSP     + F      + +  LA+I + +E          +      +++N VV+  +
Sbjct: 57  HGSPKAVLQAVFRLPENDKLLAHLAEIGVPIEDGELIIYRELNANGRSLIRLNGVVVNLK 116

Query: 112 VVDELNKHL---------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
            +  +  +L         +    V     +  G   E+ +        +    R      
Sbjct: 117 TLARVGHYLVDIQGQNDTQQLLNVDEHLILLDGFGGEKLQATKAAYQQVFQEFRAVTQRL 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK------INIARVEMIN--ALSSLIME 214
            ++         +           + ++AE  ++      +  AR ++IN   ++  +  
Sbjct: 177 RKI----QTSQQDMTQRLDLLQFQQQELAEADLQPNEEEFLLDARGKLINHKKIADRLQN 232

Query: 215 YVQKENFPH-----------IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
                N               +L      D  + +    + + Y      GR +D    
Sbjct: 233 AQLALNGEQGGAVDMLAQAMHELQEIAEFDAAYAELATTIADSYYTAQEVGRDVDEQIG 291


>gi|229013392|ref|ZP_04170529.1| DNA repair protein recN [Bacillus mycoides DSM 2048]
 gi|229134996|ref|ZP_04263802.1| DNA repair protein recN [Bacillus cereus BDRD-ST196]
 gi|228648498|gb|EEL04527.1| DNA repair protein recN [Bacillus cereus BDRD-ST196]
 gi|228747804|gb|EEL97670.1| DNA repair protein recN [Bacillus mycoides DSM 2048]
          Length = 583

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 104/277 (37%), Gaps = 51/277 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110
            G+                   A+ E ++   +  + +  RD         ++N  ++  
Sbjct: 61  YGTEKAEIEGLFYVEDDKHPCIAKAEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTL 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164
            ++ E+ K L           + +    ER  F+      +R+V  +   ++    D+E+
Sbjct: 121 SILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGNRIVKQLG-IYQNVYTDYEK 176

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L +     L          S  E QMA         R+++I      I +   K +    
Sbjct: 177 LKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKMD-EEY 216

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +L+        F++ + AL + Y     DG+ +D + 
Sbjct: 217 ELTEERLKISNFEKIYKALGDAYRSLSGDGQGLDHVR 253


>gi|323126810|gb|ADX24107.1| Putative chromosome segregation SMC [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 1181

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 106/287 (36%), Gaps = 45/287 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEMQGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++      ++  +     A   I++E    R+      I+   +R
Sbjct: 61  MPDVIFAGTENRSPLNYAQVAVVLDNSDHFIKEAKEVIRIERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L ++         ++ IF+    ERR   +             ++ ++
Sbjct: 121 LRDIHDLFMDTGLGRNSFSIISQGRVEEIFNSKPEERRAIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVK---------INIARVEM-INALS 209
              +     L +   +          ++ Q+  L  +         ++ +R ++ ++ L 
Sbjct: 172 TRKKETQSKLNQTQDNLDRLDDIIYELDNQLVPLEKQAKVAQKFLDLDASRKQLQLDILV 231

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           + I     K++     L         +  +  +++ +Y ++L   R+
Sbjct: 232 TDIALDQAKQSDDRAALESVKQDLATYYANRQSMEADY-QQLKQKRQ 277


>gi|172038210|ref|YP_001804711.1| chromosome segregation protein SMC [Cyanothece sp. ATCC 51142]
 gi|171699664|gb|ACB52645.1| chromosome segregation protein SMC [Cyanothece sp. ATCC 51142]
          Length = 1221

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + +K + +S F+++  +  + F    T+  G NG GK+NIL+A+ F   L+  +G R   
Sbjct: 2  VHVKRIELSHFKSFGGTTAIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61

Query: 61 YADVTRIG 68
            D+    
Sbjct: 62 LPDLINHN 69


>gi|116333589|ref|YP_795116.1| chromosome segregation ATPase [Lactobacillus brevis ATCC 367]
 gi|116098936|gb|ABJ64085.1| condensin subunit Smc [Lactobacillus brevis ATCC 367]
          Length = 1183

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          +++K L IS F+++A    + F    T  VG NG GK+NI EA+   L     +  R + 
Sbjct: 1  MRLKTLEISGFKSFADKTRIDFLPGMTGIVGPNGSGKSNISEAVRWVLGEQSAKSLRGSK 60

Query: 61 YADVTRIGSPS 71
            DV   GS  
Sbjct: 61 MPDVIFAGSAD 71


>gi|319946573|ref|ZP_08020807.1| SMC family domain protein [Streptococcus australis ATCC 700641]
 gi|319746621|gb|EFV98880.1| SMC family domain protein [Streptococcus australis ATCC 700641]
          Length = 1181

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A    ++FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEIQGFKSFADKTRVIFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++      ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYACVTVVLDNRDAFIKHAAKEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    ERR   +
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFE 162


>gi|295697487|ref|YP_003590725.1| AAA ATPase [Bacillus tusciae DSM 2912]
 gi|295413089|gb|ADG07581.1| AAA ATPase [Bacillus tusciae DSM 2912]
          Length = 340

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 15/183 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L   +F  +  L +       +FVG NG GKT++++A          +      +
Sbjct: 1   MTITKLRFDKFTVFDKLDIDLSPGMNVFVGANGTGKTHLMKAAYAACDISKTKGNFAEKL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV------IRVVDELNK 118
            R+  PS       V+  +G A  ++++  R  + +R    N         +    E   
Sbjct: 61  IRVYMPSGHILGRLVKRQKGSARCAVEVH-RGSKKLRISFSNHSKSPDSATVNGAKEWMA 119

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM-IDFERLMRG-----RNRL 172
               S  +P +  + +     R  +  R +   +  +   +   +   +RG     R  L
Sbjct: 120 EPIESVYIP-VKEMLANAPGFRSLYAQREI-HFEEIYADILDRAYRPALRGPIDGVRKNL 177

Query: 173 LTE 175
           L  
Sbjct: 178 LKN 180


>gi|256419156|ref|YP_003119809.1| SMC domain protein [Chitinophaga pinensis DSM 2588]
 gi|256034064|gb|ACU57608.1| SMC domain protein [Chitinophaga pinensis DSM 2588]
          Length = 543

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 116/356 (32%), Gaps = 76/356 (21%)

Query: 5   IKIKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRR 58
           ++I  L +  F+ ++ L +      ++  + +G NG GK+++ +A  FL   + GR    
Sbjct: 1   MRITKLKLRNFKRFSDLTIDQIPTSSKLVLLIGANGSGKSSVFDAFDFLERSAAGRYHFN 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELN 117
           +           +       V  +     + I  +  R    +R   I    +R+V  ++
Sbjct: 61  SYDPTTKLYYGKNNVVPDVEVALVYSQGAMLIGNKLLRPITELRNKFIGRSSVRIVPRIS 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           +               +  +     F+D      D R    +  +   ++  +  L E  
Sbjct: 121 RE--------GSSEAIAHNADAPNTFIDP-----DARFNNDLAQY---IQQIDNALREPV 164

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
           F      ++         +I     + I  L+  ++  +  +    I+L+          
Sbjct: 165 FSGRSADTL---------QIFK---DFIQPLNQSLINILGGDELTTIQLA---------- 202

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
                   E+                       + LI    D  I     S GE++++++
Sbjct: 203 --------EFKNA---------------TTQESARLIFKKGDSKINYDLLSHGEKQIIIL 239

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTG 349
            +      ++        I+ +DE+  HL+   +  L   + D+     +Q++   
Sbjct: 240 LLNF----IVRKEQYKDAIIYIDEMDCHLNTALQARLLAEIVDVWIPEDAQLWTAS 291


>gi|198419101|ref|XP_002119958.1| PREDICTED: similar to XCAP-E [Ciona intestinalis]
          Length = 1202

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 20/145 (13%)

Query: 5   IKIKFLNISEFRNYASL-RLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL+AI FL   +     R  
Sbjct: 1   MYIKSVTVDGFKSYAQQTDIKGFDPLFNAITGLNGSGKSNILDAICFLLGITNLSQVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            GME   +I+I  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGINKATVCITFDNSNKEQSPMGMEAHNEITITRQIVIGGRNKYL-ING 119

Query: 108 VVIR--VVDELNKHLRISWLVPSMD 130
           V  +   V +L + + ++   P   
Sbjct: 120 VNAQNSRVSDLFRSVGLNVNNPHFL 144


>gi|121594800|ref|YP_986696.1| hypothetical protein Ajs_2459 [Acidovorax sp. JS42]
 gi|120606880|gb|ABM42620.1| conserved hypothetical protein [Acidovorax sp. JS42]
          Length = 606

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 124/396 (31%), Gaps = 52/396 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           +K+  L IS FR   S+ L+FD  HT+ VG N VGK+ + EA+   L P R  R     +
Sbjct: 1   MKVVRLTISNFRGIKSVELLFD-GHTLMVGSNNVGKSTLCEALDLVLGPDRLNRFPPVDE 59

Query: 64  VTRIGSPSFFSTF----------ARVEGMEGLADISIKLETRDD------RSVRCLQIND 107
                +                  R+E +       I  +   +         R L   +
Sbjct: 60  FDFYNAEYLAPATEEGAEQAPIPLRIEAVLIEPGAEIGAKCGGNIEFWHVAEQRLLGPGE 119

Query: 108 VVIRVVDELNKHLRISWL---VPSMDRI-----FSGLSMERRRFLDRMVFAIDPRHRRRM 159
                  +    LRI  +    P  D       FS         L ++   I        
Sbjct: 120 ADAANPPDAVPCLRIETIGQYNPEEDEFEARTYFSHSPDAPPGELTKVPKGIKRLFGFL- 178

Query: 160 IDFERLMR--GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
             + R +R   R   L  G         ++  +   GV+ ++   + I  L  L +E   
Sbjct: 179 --YLRALRTGSRALSLERGSL-------LDIILRTKGVRTSLW-EKTIERLRGLDIEADA 228

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
            E  P ++            +S     + +  +L      + + +          L +  
Sbjct: 229 TEIAPVLRSVERRLARYIALESPGNATKLHVSEL----TREHLRKTMTF-----FLALSA 279

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
               +   H  TG     +  + LA    I++      I  ++E    +    +  + + 
Sbjct: 280 DQGHVPFPHAGTG----TINTLVLALLSFIADLKPDTVIFAMEEPEIAVPPHTQRRIAQY 335

Query: 338 VTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           +    +Q F+T     V +    +   +   N   +
Sbjct: 336 LLTKTTQAFVTSHSPFVIEKFEPSKTLLLARNAGVV 371


>gi|45357895|ref|NP_987452.1| hypothetical protein MMP0332 [Methanococcus maripaludis S2]
 gi|45047455|emb|CAF29888.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 626

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + +  ++I  +R+   L L FD    + VG N  GK+NI++AI
Sbjct: 1  MYLSKVHIENYRSIKELDLTFDQGKNVIVGKNNAGKSNIIKAI 43


>gi|301048685|ref|ZP_07195694.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300299431|gb|EFJ55816.1| conserved hypothetical protein [Escherichia coli MS 185-1]
          Length = 633

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 28/46 (60%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +++I  +++  F+++ ++ +V +    I +G+N  GK+ + EAI  
Sbjct: 2  KLRISKISLKNFKSFKNISIVPNPDFNIIIGENSAGKSTVFEAIHL 47


>gi|229061864|ref|ZP_04199194.1| DNA repair protein recN [Bacillus cereus AH603]
 gi|228717425|gb|EEL69093.1| DNA repair protein recN [Bacillus cereus AH603]
          Length = 583

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 105/277 (37%), Gaps = 51/277 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110
            G+                   A+ E ++   + S+ +  RD         ++N  ++  
Sbjct: 61  YGTEKAEIEGLFYVEDDKHPCIAKAEELDIEIEDSMIILKRDIAANGKSVCRVNGKLVTL 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164
            ++ E+ K L           + +    ER  F+      +R+V  +   ++    D+E+
Sbjct: 121 SILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGNRIVKQLG-IYQNVYTDYEK 176

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L +     L          S  E QMA         R+++I      I +   K +    
Sbjct: 177 LKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKMD-EEY 216

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +L+        F++ + AL + Y     DG+ +D + 
Sbjct: 217 ELTEERLKISNFEKIYKALGDAYRSLSGDGQGLDHVR 253


>gi|15806490|ref|NP_295200.1| DNA repair protein [Deinococcus radiodurans R1]
 gi|7388063|sp|Q9WXF2|RECN_DEIRA RecName: Full=DNA repair protein recN; AltName: Full=Recombination
           protein N
 gi|6459236|gb|AAF11043.1|AE001992_3 DNA repair protein [Deinococcus radiodurans R1]
          Length = 564

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 88/284 (30%), Gaps = 38/284 (13%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L I        L L        F G+ G GK+ I++A+  L  GR     +  D+ 
Sbjct: 33  RLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGR-----ANHDLI 87

Query: 66  RIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVR-------CLQINDVVIRVVDELN 117
           R G      T    +G E  AD  S +L +    + R         ++ +     +    
Sbjct: 88  RSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHW 147

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL----- 172
           +H  +S L P+  R      + +         A       R+   +   R R R      
Sbjct: 148 QHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQRERARQIDLLA 207

Query: 173 -----LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                ++E   D      +  +++ L        +  I   ++  +E +   +     L 
Sbjct: 208 FQVQEISEVSPDPGEEEGLNTELSRLSN------LHTIAQAAAGGVELLSDGDLNAAGLI 261

Query: 228 LTGFL----DGKFDQSFCALKEEYAKKLF-----DGRKMDSMSR 262
                      K+D++   L+ E    L       G   D    
Sbjct: 262 GEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEG 305


>gi|163941932|ref|YP_001646816.1| DNA repair protein RecN [Bacillus weihenstephanensis KBAB4]
 gi|163864129|gb|ABY45188.1| DNA repair protein RecN [Bacillus weihenstephanensis KBAB4]
          Length = 579

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 104/277 (37%), Gaps = 51/277 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 2   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110
            G+                   A+ E ++   +  + +  RD         ++N  ++  
Sbjct: 57  YGTEKAEIEGLFYVEDDKHPCIAKAEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTL 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164
            ++ E+ K L           + +    ER  F+      +R+V  +   ++    D+E+
Sbjct: 117 SILKEIGKTLVDIHGQHETQDLMN---EERHMFMLDHFDGNRIVKQLG-IYQNVYTDYEK 172

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L +     L          S  E QMA         R+++I      I +   K +    
Sbjct: 173 LKKQ----LKS-------LSENEQQMA--------HRLDLIQFQHEEIRKADLKMD-EEY 212

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +L+        F++ + AL + Y     DG+ +D + 
Sbjct: 213 ELTEERLKISNFEKIYKALGDAYRSLSGDGQGLDHVR 249


>gi|332367147|gb|EGJ44883.1| cell division protein Smc [Streptococcus sanguinis SK1059]
          Length = 1178

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 92/252 (36%), Gaps = 32/252 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEIQGFKSFADKTKVVFDQGVTAVVGPNGSGKSNITESLRWALGESSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++ S    ++  +         I++E    RS     +I+   +R
Sbjct: 61  MPDVIFAGTETRKPLNYASVVVVLDNSDQFIKDAANEIRVERHIYRSGDSEYKIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + E
Sbjct: 121 LRDVHDLFMDTGLGRDSFSIISQGKVEEIFNSKPEERRAIFEEAAGVLK--YKTRRKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKIN----IARVEMINALSSLIMEY 215
             +      L       Y   S    +E Q AE   +        R   ++ L + +   
Sbjct: 179 SKLSQTQDNLDRLEDIIYELESQVKPLEKQ-AETAKRFLSLDGQRRELYLDVLVAQLTAN 237

Query: 216 VQKENFPHIKLS 227
            ++       L+
Sbjct: 238 KERLTQAEEDLT 249



 Score = 38.0 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 22/139 (15%)

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD------ 279
            LS    L    ++    +KE +       R+   ++ R + G   +DLI+   D      
Sbjct: 1007 LSAKNLLLETIEEMNDEVKERFKSTFEAIRESFKVTFRQMFGGGSADLILTEGDLLTAGV 1066

Query: 280  ---------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                     K  ++   S GE+ +  + +  +  R+        P ++LDE+ A LDE  
Sbjct: 1067 EISVQPPGKKIQSLNLMSGGEKALSALALLFSIIRV-----KTIPFVILDEVEAALDEAN 1121

Query: 331  RNALFRIVT--DIGSQIFM 347
                   +   D  SQ  +
Sbjct: 1122 VKRFGDYLNRFDKDSQFIV 1140


>gi|323187247|gb|EFZ72559.1| recF/RecN/SMC N terminal domain protein [Escherichia coli RN587/1]
          Length = 550

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 138/402 (34%), Gaps = 76/402 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-----SFLSP-----GRGF 56
           ++ L + +FR ++ L + F+   T+ +G+NG GKT+IL AI      F++      G G 
Sbjct: 66  LRRLTLKDFRRFSLLEIKFEEDLTVIIGNNGKGKTSILYAIAKTLSWFVANILKEGGSGQ 125

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R +   D+       +    +     +GL  + I+L      +       D  ++   +L
Sbjct: 126 RLSELTDIKNDAENRYADVSSTFFFGKGLKSVPIRLSRSALGTAER---RDSEVKPARDL 182

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
               R+                   + ++   FA+      R   F R  +  N    E 
Sbjct: 183 ADIWRVI---------------NEAKTINLPTFALYNV--ERSQPFNRNTKD-NAGRREE 224

Query: 177 YFDSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
            FD ++  ++    +               I+ +SS I E  Q+ N       L   +DG
Sbjct: 225 RFD-AYSQALGGAGRFDHFVEWYIYLHKRTISDISSSIKELEQQVN------DLQRSVDG 277

Query: 235 KFDQSFCALKEEYAKKLFDGRKM-----------DSMSRRTL-----------------I 266
               S  +L E+   KL +  +            +S+ +  +                 +
Sbjct: 278 GM-VSVKSLLEQMKLKLSEASERNDAAVSSKMVTESVQKSIVEKSICSVVPSISKIWVEM 336

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA-----HARLISNTTGFAPILLLDE 321
                 + V      +TI   S G++  + +   LA        L+ N      I+L+DE
Sbjct: 337 TTGSDLVKVTNDGHDVTIDQLSDGQRVFLSLVADLARRMVMLNPLLENPLEGRGIVLIDE 396

Query: 322 ISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNET 361
           I  HL    +  +   +  +    Q  +T     V  ++ + 
Sbjct: 397 IELHLHPKWQQEVILNLRSVFPNIQFIITTHSPIVLSTIEKR 438


>gi|21674524|ref|NP_662589.1| Smc family protein [Chlorobium tepidum TLS]
 gi|21647717|gb|AAM72931.1| SMC family protein [Chlorobium tepidum TLS]
          Length = 1183

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/273 (17%), Positives = 97/273 (35%), Gaps = 37/273 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           + +  + +  F+++A  +R+ FD   T  VG NG GKTN+++AI   L   +    R   
Sbjct: 1   MYLSKIELFGFKSFAHRVRIHFDKGLTAIVGPNGCGKTNVVDAIRWVLGEQKSMLLRSPK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             ++   G+      SF      +E    +        T   R  R       +N V  R
Sbjct: 61  MENIIFNGTKRLKPLSFTEVSITIENTRNILPTEYTEVTVTRRLYRNGDSDYLLNMVPCR 120

Query: 112 VVDELNKHLRISWLVPSMD--------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D L+          +           I S  S ER +  +             +  ++
Sbjct: 121 LKDILDLFADTGMGSDAYSVIELKMIEEIISNKSEERLKLFEE---------AAGITRYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           +  +   R L     D    + ++  +AE+  K+   R+++    +  + E   +E    
Sbjct: 172 QRRKQTFRQLESASRD---LARVDDVLAEVEKKVRNLRLQV--RKAERLKEI--REELRT 224

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           + L+L+     +  Q    L +  A +     +
Sbjct: 225 LDLTLSAISMDEHLQKLRPLLDSIAAEERQCHE 257


>gi|319651485|ref|ZP_08005613.1| DNA repair protein [Bacillus sp. 2_A_57_CT2]
 gi|317396800|gb|EFV77510.1| DNA repair protein [Bacillus sp. 2_A_57_CT2]
          Length = 560

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 82/246 (33%), Gaps = 28/246 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    +L + F+   T+  G+ G GK+ I++AI  L+ GRG      A+  R
Sbjct: 2   LNEISIRNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARV-------------EGMEGLADISIKLETRDDRSVRCL-QINDV--VI 110
            G          +             E    + D  I L     ++ + + ++N     I
Sbjct: 57  HGEDKAEIEGLFILDDLKHPCYKRSAEFGIEIEDGMIVLRRDISKTGKSVCRVNGKLVTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            V+ E+   L           +           +F    + A    ++     +E  ++ 
Sbjct: 117 SVLREIGSSLIDIHGQHEHQELMDETFHLPLLDQFGGSKLSAALTEYQDIYRLYENTLKK 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
              L       +     I+ Q+ E+           +N    LI E  +  NF  I  SL
Sbjct: 177 LKNLSENEQQMAHRLDLIQFQLDEIQSAQLK-----LNEDEDLIEEKRKLSNFERIFDSL 231

Query: 229 TGFLDG 234
               + 
Sbjct: 232 QSGYNA 237


>gi|91202833|emb|CAJ72472.1| similar to structural maintenance of chromosome (smc)
          seggregation ATPase protein [Candidatus Kuenenia
          stuttgartiensis]
          Length = 1207

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          +K+K L +  F+++A    +VF+    + VG NG GK+NI++A+   L     +  R   
Sbjct: 1  MKLKKLELFGFKSFAEKTEVVFEDGINVIVGPNGCGKSNIVDAVKWVLGEQSVKSLRGNE 60

Query: 61 YADVTRIGSP 70
           +DV   G+ 
Sbjct: 61 MSDVIFNGTE 70


>gi|218960817|ref|YP_001740592.1| hypothetical protein CLOAM0487 [Candidatus Cloacamonas
          acidaminovorans]
 gi|167729474|emb|CAO80385.1| conserved hypothetical protein [Candidatus Cloacamonas
          acidaminovorans]
          Length = 629

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 5  IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          + +  L I+ FR Y    L ++F+    + +G+N  GK+ I++A+ ++   + +      
Sbjct: 1  MYLLKLKITNFRKYGDPGLEVIFNQGLNVLIGENESGKSTIIDAVRYILNTQSY------ 54

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADIS 89
          +  R+    F    A     E   +  
Sbjct: 55 EYIRVQETDFHCNQAGNRAEELKIECE 81


>gi|126458979|ref|YP_001055257.1| SMC domain-containing protein [Pyrobaculum calidifontis JCM 11548]
 gi|126248700|gb|ABO07791.1| SMC domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 700

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 21/211 (9%)

Query: 155 HRRRMIDFERLMRG--RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           +R     +   ++   R   L             E ++A    ++  AR E +  L   +
Sbjct: 501 YRELRAAYVEYLKAHSRAEELRRE------LEKAERELAGAAAELEKARAE-LEKLDKAL 553

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH-RS 271
                     +I+  L             A+ EE        R  ++     L+    R 
Sbjct: 554 AAAK------NIRAVLGEVKPLARQILLKAINEELNAVFLRLRHKEAFKSVQLVEAGGRY 607

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
            + +   +  I  +  S GEQ ++ + + +A AR +    G AP ++LDE + HLDE+ R
Sbjct: 608 AVRIHTPNGHIEHSLLSLGEQNLLALSLRVALARAL---IGTAPFMMLDEPTEHLDEEHR 664

Query: 332 NALFRIVTDIGSQI--FMTGTDKSVFDSLNE 360
             +  +V D+ S +   +  +    F+ + +
Sbjct: 665 RRIVELVRDLTSVVPTVIVTSHLGEFEEVAD 695



 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          IK L +  F+ +A     F        G NG GKT+++EA++    G
Sbjct: 2  IKRLEVVNFKAHARAVFKFGEGVNFVYGPNGSGKTSLMEAVAVALFG 48


>gi|49481897|gb|AAT66660.1| DNA repair and genetic recombination protein [Geobacillus
           lituanicus]
          Length = 573

 Score = 58.4 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LTELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G+       A +EG+  L D           + ++  D                 +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   V+ ++   L           +           LD             +  + R 
Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  R   L          S  E QMA         R++++       +E    E     +
Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + AL++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|260889921|ref|ZP_05901184.1| cell division protein Smc [Leptotrichia hofstadii F0254]
 gi|260860527|gb|EEX75027.1| cell division protein Smc [Leptotrichia hofstadii F0254]
          Length = 183

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           + +K L ++ F+++A+  +  FD   T  VG NG GK+NIL+AI ++   + +   R   
Sbjct: 1   MYLKALELTGFKSFANRTVVEFDNGITSIVGPNGSGKSNILDAILWVLGEQSYKNIRAKE 60

Query: 61  YADVTRIGS-----PSFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
            +D+   G       S       ++  +   D+    +K+  R          IN+   R
Sbjct: 61  SSDIIFSGGKNKKPKSMAEVSLIIDNGDRYLDVDFSEVKITRRIFKTGENEYLINNKKSR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|222475723|ref|YP_002564244.1| SMC domain protein [Halorubrum lacusprofundi ATCC 49239]
 gi|222454094|gb|ACM58358.1| SMC domain protein [Halorubrum lacusprofundi ATCC 49239]
          Length = 926

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 100/305 (32%), Gaps = 49/305 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS--FLSPGRGFRRASYA 62
           +K K L +   R+Y +  + F+    +  G NG GK+ IL+ +          ++  +  
Sbjct: 1   MKFKTLILENIRSYENGHIDFEDGENLLFGLNGAGKSTILQGVFGGLFQTKMKYQVGNDF 60

Query: 63  ---DVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN- 117
              D+ R  +            G E   +  I+    DD  V   +      ++  +   
Sbjct: 61  DLPDLVRTQADEGRIELVFEAGGAEYTVEWVIQKSYDDDDEVNGAKTKQGYPKLSSDALS 120

Query: 118 -----------KHLRISWLVPSMD------------RIFSGLSMERRRFLDRMVFA---- 150
                      +  R+  +                 R+    + +RR+ LD ++      
Sbjct: 121 EDVSSLGDVQTEIQRVVGMDAESFVNSVYVQQGDITRLIHASTEDRRKILDGLLGLNRLD 180

Query: 151 -IDPRHRRRMIDFERLMRGRNRLL---TEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
               R      ++++  R  N  L    +   D      I++Q+ +   KI+  + + I+
Sbjct: 181 EYVDRMEDARREYKKAKRDSNSRLDETKKRLQDLPAEDEIQSQINKTDKKISDIKGD-ID 239

Query: 207 ALSSLI----------MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            L S I           E + + +   ++L  T       +      KEE  ++    RK
Sbjct: 240 DLESKIDGLEDERETKTETLDRIDDLQVELDETRDKYEDAESDHETYKEELQEEKEAQRK 299

Query: 257 MDSMS 261
            +   
Sbjct: 300 AEDAR 304


>gi|116492610|ref|YP_804345.1| condensin subunit Smc [Pediococcus pentosaceus ATCC 25745]
 gi|116102760|gb|ABJ67903.1| condensin subunit Smc [Pediococcus pentosaceus ATCC 25745]
          Length = 1176

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 27/165 (16%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K++ + IS F+++A + ++ F    T  VG NG GK+NI+EAI ++   +  +  R   
Sbjct: 1   MKLRTIEISGFKSFADNTKIEFKDGITGIVGPNGSGKSNIIEAIRWVMGETSAKSLRGGK 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G+              F ++   ++       IS +L    +      ++N  
Sbjct: 61  MPDVIFSGTEKRKPLSRASVTIIFDNSDHFLDSKFDEVMISRRLFRNGESQ---YELNRQ 117

Query: 109 VIRVVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
             R+ D LN  +                ++ IF+    +RR  ++
Sbjct: 118 ECRLKDILNLFIDTGLGRESFSVISQGRVESIFNSKPEDRRAIIE 162


>gi|329575675|gb|EGG57202.1| RecF/RecN/SMC protein [Enterococcus faecalis TX1467]
          Length = 287

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNNDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208


>gi|320583806|gb|EFW98019.1| putative nuclear condensin complex SMC ATPase [Pichia angusta DL-1]
          Length = 1171

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L +  F++YA   +   +D Q     G NG GK+NIL+AI F+         R A
Sbjct: 1   MKVEELVLDGFKSYAVRTVISSWDPQFNAITGLNGSGKSNILDAICFVLGISSMSTVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+  + G          +            G E  + ISI  +     + + L IN 
Sbjct: 61  SLQDLIYKRGQAGVTKASVTITFDNSDKSKSPIGFEQYSKISISRQVLLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
             ++    LN    +   + + + +    
Sbjct: 120 HKVQQSQILNLLQSVQLNINNPNFLIMQG 148


>gi|330971054|gb|EGH71120.1| hypothetical protein PSYAR_11199 [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 576

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +++ L I  FR+   L           +G    GK++IL+AI      R
Sbjct: 3  RVRKLEIQNFRSIRLLTWTPSPGINCLIGPGDSGKSSILDAIDMCLGAR 51


>gi|291295935|ref|YP_003507333.1| SMC domain-containing protein [Meiothermus ruber DSM 1279]
 gi|290470894|gb|ADD28313.1| SMC domain protein [Meiothermus ruber DSM 1279]
          Length = 1074

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 8/105 (7%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASY 61
           +KI+ L +  F+++     L F       VG NG GK+N++EA+ ++  +  +  R    
Sbjct: 1   MKIERLFLQGFKSFGERTSLEFGPGVYGIVGPNGSGKSNLVEALRWVVGARAKELRGDEA 60

Query: 62  ADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR 101
             +   GS       F      + G      +S +LE      +R
Sbjct: 61  QALLFHGSDGRPPLGFAEVGLELGGNGKRISLSRRLERDGSSEIR 105



 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 6/155 (3%)

Query: 193  LGVKINIARVEMINALSSLIMEYVQKENFPHIKL-SLTGFLDGKFDQSFCALKEEYAKKL 251
            L  +      E I  L   + E          +L  +      +  Q +   KE++A+  
Sbjct: 884  LAEQEYALLSEDIARLEVALQESEAAVRKLEAELHQVASAYQERMQQVYGVFKEKFAQYA 943

Query: 252  FDGRKMDSMSRRTLIGPHRSDLIVDYCDKA-ITIAHGSTGEQKVVLVGIFLAHARLISNT 310
                  +    R+  G    +LI+    K  + +   S GE+ +  +    A + +   +
Sbjct: 944  GALLDAEVELERSTQGL---ELILKPAGKRTVNLNLLSMGERTMGALAFLFALSEVGEES 1000

Query: 311  TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
            +G  PI +LDE+ A LDE       R +    +Q 
Sbjct: 1001 SG-LPIAVLDEVDAPLDEANIQRFCRFLQHFKNQT 1034


>gi|328945555|gb|EGG39706.1| DNA repair protein RecN [Streptococcus sanguinis SK1087]
          Length = 552

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R        DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRS-----TTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA----IDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD    A    +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGSADFLNLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|323705468|ref|ZP_08117043.1| chromosome segregation protein SMC [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535370|gb|EGB25146.1| chromosome segregation protein SMC [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1182

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60
           + +K L+I  F+++A  + L F+   T  VG NG GK+NI +A+  +      +  R   
Sbjct: 1   MFLKKLDIIGFKSFADRVVLNFEKGITAIVGPNGSGKSNISDAVRLVLGEQSIKSLRGNK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV  +G+      SF      ++  + +  +    + +  +  RS      IN    R
Sbjct: 61  LEDVIFVGTENRKPLSFAEVTLTLDNSDHMLPLDFTEVVITRKIFRSGESEFYINKTQCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D     +                +D I      +RR+  +
Sbjct: 121 LKDVFELFMDTGMGRDGYSIIGQGKIDEILLSRPEDRRQIFE 162



 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 29/211 (13%)

Query: 157  RRMIDFE-RLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
            +   D+E      +  L+ E         S I A + ELG+    A  E  N        
Sbjct: 946  KLWEDYEITFNNAKANLIKENILTLRQQLSKINASIKELGIVNLNAIEEYKNLKERYDFL 1005

Query: 215  YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
             +Q ++    K SL   +D          K+ +   L + +  ++  +  L G  R++LI
Sbjct: 1006 KMQYDDLVEAKNSLNSIIDDANKIIKTKFKDNF--NLIESQFKETFKK--LFGGGRAELI 1061

Query: 275  VDYCD----------------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
            +   D                K   I+  S GE+ +V + +  A   +        P  +
Sbjct: 1062 LTNPDDLLNTGIEINVQPPGKKLQNISLLSGGEKALVAISLLFAMILI-----RPTPFCI 1116

Query: 319  LDEISAHLDEDKRNALFRIVTDIG--SQIFM 347
            LDEI A LD+   +     + D+   SQ  +
Sbjct: 1117 LDEIDAALDDANVDRFASYLKDLSRESQFIV 1147


>gi|21909912|ref|NP_664180.1| putative chromosome condensation and segregation SMC protein
           [Streptococcus pyogenes MGAS315]
 gi|28896389|ref|NP_802739.1| chromosome segregation SMC protein [Streptococcus pyogenes SSI-1]
 gi|21904100|gb|AAM78983.1| putative chromosome condensation and segregation SMC protein
           [Streptococcus pyogenes MGAS315]
 gi|28811640|dbj|BAC64572.1| putative chromosome segregation SMC protein [Streptococcus pyogenes
           SSI-1]
          Length = 1175

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 108/273 (39%), Gaps = 30/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ F    T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIELEGFKSFADKTKIEFYKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A+V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216
             +      L       Y   +  + +E Q  +A+  ++++  R ++ ++ L   I    
Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +++      L++       +     +++E+Y K
Sbjct: 239 ERQTKDTEALAVLQQDLASYYAKRQSMEEDYQK 271


>gi|302817360|ref|XP_002990356.1| hypothetical protein SELMODRAFT_428807 [Selaginella
          moellendorffii]
 gi|300141918|gb|EFJ08625.1| hypothetical protein SELMODRAFT_428807 [Selaginella
          moellendorffii]
          Length = 1205

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          KI  + +  F++Y     +      T  +G NG GK+N+++AISF+   R    R A   
Sbjct: 9  KIHRIEVENFKSYKGHQVIGPFKNFTAIIGPNGAGKSNLMDAISFVLGVRSMQLRGAQLK 68

Query: 63 DVT 65
          D+ 
Sbjct: 69 DLI 71


>gi|114775605|ref|ZP_01451173.1| hypothetical protein SPV1_04733 [Mariprofundus ferrooxydans PV-1]
 gi|114553716|gb|EAU56097.1| hypothetical protein SPV1_04733 [Mariprofundus ferrooxydans PV-1]
          Length = 637

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 127/399 (31%), Gaps = 73/399 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           ++++ L I  FR   S ++ F   HT+ VG N +GK+ + EA+   L P R FRR    +
Sbjct: 1   MRVRRLTIENFRGVRSGQVDF-RGHTLLVGGNNIGKSTVCEALDLVLGPERLFRRPVIDE 59

Query: 64  VTRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK--- 118
                    S  +    +     L D+S + E R  R +R  + ND+  + VDE      
Sbjct: 60  HDFYKGKYLSADNKPVEIIIRALLTDLSEEAERRFHRHLR--RWNDIDGQFVDESGDGPE 117

Query: 119 ---------HLRISWL----VPSMDRI------------FSGLSMERRRFLDRMVFAIDP 153
                     L + ++        D I                  E++    R +F  + 
Sbjct: 118 AADAEGTVWALPVVFIGRYEADEDDFIGNTFFDHPVDEMDEEEPAEQQLGGGRKIFGREQ 177

Query: 154 R------HRRRMIDFERLMR-GRNRLL-TEGYFDSS-WCSSIEAQMAELGVKINIARVEM 204
           +        R +    R +   R  LL T    D S      E  +A L           
Sbjct: 178 KRLCGFIFLRTLRTGSRALSLQRGSLLDTVLRLDGSGLTEMWEKTLAGL----------- 226

Query: 205 INALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
              L   I E  Q K     I+  L  F++   D         +A  L      D +   
Sbjct: 227 -RGLDPAIGEIEQLKTIRDEIRKRLARFVNLSEDDDATGF---FASDLTRDHLRDVVRLF 282

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG-FAPILLLDEI 322
               P    +          +  GS       +  +  A    I++  G  + I  ++E 
Sbjct: 283 LAAQPAPHQVPFQ------KLGTGS-------INLLVFALLTFIADLKGNRSVIFAMEEP 329

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
              L    +  + R +     Q  +T     + +    T
Sbjct: 330 EIALPPHTQRRVIRFILSEMGQAIVTSHSPYIIEQFEPT 368


>gi|312111707|ref|YP_003990023.1| chromosome segregation protein SMC [Geobacillus sp. Y4.1MC1]
 gi|311216808|gb|ADP75412.1| chromosome segregation protein SMC [Geobacillus sp. Y4.1MC1]
          Length = 1187

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K L+I  F+++A  + + F    T  VG NG GK+NI +AI ++      +  R A 
Sbjct: 1  MFLKRLDIIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFAGSDS 71


>gi|304440216|ref|ZP_07400106.1| possible chromosome segregation protein Smc [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304371265|gb|EFM24881.1| possible chromosome segregation protein Smc [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 1182

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 96/299 (32%), Gaps = 54/299 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPG--RGFRRAS 60
           + +K L +  F+++A   ++ FD + T  VG NG GK+NI +AI   L     +  R   
Sbjct: 1   MYLKSLTMQGFKSFADKTKIEFDNEITGVVGPNGSGKSNISDAIMWVLGETSIKSLRGKK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCL----QINDVVIR 111
             DV   G+       F         ++   +I         +  R L    +IN   +R
Sbjct: 61  MEDVIFSGTNKRKPLGFAEVTILFNNIDRALNIDFDEVAVSRKMYRSLESEYRINGEKVR 120

Query: 112 VVDE---------------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPR 154
           + D                L    RI       D + S    +RR   +    +     +
Sbjct: 121 LKDVKELFMDTGIGKDGYSLIGQGRI-------DEVLSNSPDKRRAIFEEASGISKFKSK 173

Query: 155 HRRRMIDFERL-------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
            +  +    R              +  R   L E    +        ++ EL + I+   
Sbjct: 174 KQEALNKLNRTDQNITRISDIISEIATRVDELEEESKKAIKYLEYTGELKELDLTISKRD 233

Query: 202 ----VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
               +  +   S+++ E   + +  ++ L      +  F +    L+ E         +
Sbjct: 234 YSNIINYLKDRSTILKEKTSEFDKTNLNLEDFRNKEKIFKEDIEKLQIELENLNLKNFE 292


>gi|295399781|ref|ZP_06809762.1| chromosome segregation protein SMC [Geobacillus
          thermoglucosidasius C56-YS93]
 gi|294978184|gb|EFG53781.1| chromosome segregation protein SMC [Geobacillus
          thermoglucosidasius C56-YS93]
          Length = 1187

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K L+I  F+++A  + + F    T  VG NG GK+NI +AI ++      +  R A 
Sbjct: 1  MFLKRLDIIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFAGSDS 71


>gi|257870562|ref|ZP_05650215.1| chromosome partition protein SMC [Enterococcus gallinarum EG2]
 gi|257804726|gb|EEV33548.1| chromosome partition protein SMC [Enterococcus gallinarum EG2]
          Length = 1196

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 32/216 (14%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EAI   L     +  R   
Sbjct: 1   MYLKRIEIAGFKSFADRTIIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      +N    R
Sbjct: 61  MPDIIFAGSDTRKPLNVAEVTIILDNTDHYLPMDYSEISVTRRLRRTGESDFYLNKQSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IFS    +RR   +             +   +
Sbjct: 121 LRDVQELFMDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEA--------AGVLKYKQ 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSS---IEAQMAELGVK 196
           R  +   +L       +        +E Q+  L  +
Sbjct: 173 RKKKAEQKLFETEDNLNRLQDIIYELEDQLIPLAAQ 208


>gi|225419775|ref|ZP_03762078.1| hypothetical protein CLOSTASPAR_06113 [Clostridium asparagiforme
           DSM 15981]
 gi|225041579|gb|EEG51825.1| hypothetical protein CLOSTASPAR_06113 [Clostridium asparagiforme
           DSM 15981]
          Length = 1186

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I  F+++A+ L   F    T  VG NG GK+N+ +A+ ++      +  R AS
Sbjct: 1   MYLKSIEIQGFKSFANKLVFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGAS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+       F      ++  +    I     T   R  R       IN    R
Sbjct: 61  MQDVIFSGTELRKPQGFAYVAITLDNGDHQLAIDYDQVTVSRRLYRSGESEYMINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          +D+I SG   ERR   D
Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFD 162


>gi|14279543|gb|AAK58634.1|AF271731_1 SMC2-like condensin [Arabidopsis thaliana]
 gi|13449986|gb|AAG27593.2| SMC2-like condensin [Arabidopsis thaliana]
          Length = 1177

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA+  +V  FD       G NG GK+NIL++I F   ++  +  R A
Sbjct: 1   MHIKEICLEGFKSYATRTVVSGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          V            G E   +I++  +       + L IN 
Sbjct: 61  NLQELVYKQGQAGITKATVSVTFDNSERHRSPLGYEEHPEITVTRQVVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            + +     N    +   V +   +    
Sbjct: 120 KLAQPSQVQNLFHSVQLNVNNPHFLIMQG 148


>gi|68066462|ref|XP_675214.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56494268|emb|CAH99081.1| hypothetical protein PB001653.02.0 [Plasmodium berghei]
          Length = 398

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + I+ + +  F++Y +  +   F  Q     G NG GK+N+L+AI F+         R  
Sbjct: 1   MHIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60

Query: 60  SYADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
              ++  + G          ++         ++   RD +++   +
Sbjct: 61  RLDELIYKQGQAGITKGSVTIKFNNEEKPSPLQEPYRDMKTITITR 106


>gi|327310670|ref|YP_004337567.1| purine NTPase [Thermoproteus uzoniensis 768-20]
 gi|326947149|gb|AEA12255.1| purine NTPase [Thermoproteus uzoniensis 768-20]
          Length = 706

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
          ++ + +  F+ +  L   F        G NG GK+++LEA++    G  +    +A +AD
Sbjct: 2  LRSIELRNFKAHEELAADFVEGVNFIYGPNGAGKSSLLEAVAVALYGSKWVQKVKARWAD 61

Query: 64 VTRIGSPSFFSTFARV 79
          + R G+       A V
Sbjct: 62 LVRRGASEASVRLAFV 77


>gi|241894937|ref|ZP_04782233.1| DNA repair and genetic recombination protein [Weissella
           paramesenteroides ATCC 33313]
 gi|241871655|gb|EER75406.1| DNA repair and genetic recombination protein [Weissella
           paramesenteroides ATCC 33313]
          Length = 563

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 69/211 (32%), Gaps = 31/211 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I  F     L + F+   T+  G+ G GK+ I++A+  L+ GRG       D  R
Sbjct: 2   LQELSIQNFAIIPKLNISFEPGMTVLTGETGAGKSIIIDAVGLLTGGRG-----SQDYIR 56

Query: 67  IGSPSFFSTFARVEGMEGLA------DISIKLETRD--------DRSVRCLQINDVVIR- 111
            G+ +       ++     A      D+ IKLE                 +++N+ ++  
Sbjct: 57  EGTDTA-VLQGLIDVEPNTALSAILDDLGIKLEDNQLLIHRELHRNGRNVIRVNNTLVNA 115

Query: 112 -VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDP---RHRRRMIDFER-- 164
             +  L  HL           +      +    LD      I P    + +    + +  
Sbjct: 116 TALKLLGSHLVDIHGQNEHQALMQ--PEQHLSLLDEFAKNQIQPVMTAYSQAYAKYRQLE 173

Query: 165 -LMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
                R              S    ++ E G
Sbjct: 174 DAYHQRQADEQAWAQRLDMLSFQSNELNEAG 204


>gi|146339047|ref|YP_001204095.1| putative chromosome segregation SMC protein [Bradyrhizobium sp.
           ORS278]
 gi|146191853|emb|CAL75858.1| putative chromosome segregation SMC protein [Bradyrhizobium sp.
           ORS278]
          Length = 1154

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K+  L +  F+ +      V +   T  VG NG GK+N++EA+ +       +    AD
Sbjct: 1   MKLTRLRLHGFKTFVEPTDFVIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRAAD 60

Query: 64  V---TRIGSP-----SFFSTFARVEGMEGLADISI------KLETRDDR-SVRCLQINDV 108
           +      GS      +       ++  +  A  ++      ++  R +R +    +IN  
Sbjct: 61  MDAVIFSGSNTRPSRNHAEVVMTIDNSDRTAPAAVNDRDILEISRRIEREAGSVYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166



 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  T++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1042 GKKPQTLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1096

Query: 338  VTDIGS 343
            + ++  
Sbjct: 1097 LHEMKG 1102


>gi|148253812|ref|YP_001238397.1| condensin subunit Smc [Bradyrhizobium sp. BTAi1]
 gi|146405985|gb|ABQ34491.1| condensin subunit Smc [Bradyrhizobium sp. BTAi1]
          Length = 1154

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K+  L +  F+ +      V +   T  VG NG GK+N++EA+ +       +    AD
Sbjct: 1   MKLTRLRLHGFKTFVEPTDFVIEPGLTGVVGPNGCGKSNLVEALRWAMGETSHKSLRAAD 60

Query: 64  V---TRIGSP-----SFFSTFARVEGMEGLADISI------KLETRDDR-SVRCLQINDV 108
           +      GS      +       ++  +  A  ++      ++  R +R +    +IN  
Sbjct: 61  MDAVIFSGSNTRPARNHAEVVMTIDNSDRTAPAAVNDRDILEISRRIEREAGSVYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166



 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  T++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1042 GKKPQTLSLLSGGEQALTAMALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1096

Query: 338  VTDIGS 343
            + ++  
Sbjct: 1097 LHEMKG 1102


>gi|294655464|ref|XP_002770131.1| DEHA2B15136p [Debaryomyces hansenii CBS767]
 gi|199429980|emb|CAR65500.1| DEHA2B15136p [Debaryomyces hansenii]
          Length = 1170

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVEELIIDGFKSYATRTVISGWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E    IS+  +     S + L +N 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNSEISKSPIGFENCPKISVTRQIILGGSSKYL-VNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    LN    +   + + + +    
Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148



 Score = 36.0 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD--IGSQI 345
            S G++ ++ + + +A  +        AP+ +LDE+ A LD      +  ++     GSQ 
Sbjct: 1085 SGGQRSLIALSLIMALLQF-----KPAPMYILDEVDAALDLSHTQNIGHLIKTRFKGSQF 1139

Query: 346  FMTGTDKSVF 355
             +    + +F
Sbjct: 1140 IIVSLKEGMF 1149


>gi|317488153|ref|ZP_07946727.1| RecF/RecN/SMC N terminal domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316912740|gb|EFV34275.1| RecF/RecN/SMC N terminal domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 436

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 87/252 (34%), Gaps = 43/252 (17%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++A    L  +      VG NG GK+NI +A+   L     +  R  +
Sbjct: 1   MYLKSLVLKGFKSFADRSVLALEPGIIAVVGPNGSGKSNISDAVLWVLGERNAKHLRGQA 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   GS +  S   A V+ +   +D ++ ++  +    R +         IN VV R
Sbjct: 61  MEDVIFAGSSARKSVGIAEVDLVLDNSDGTLPVDFDEVAVTRRMYRSGESEYLINGVVAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            +D         L           S+D I      +RR  ++                  
Sbjct: 121 RMDVLDILHDSGLGTGTHSIISQGSLDSILQSKPEDRRALIEEAAG-------------- 166

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENF 221
            +++ + R            ++++A +A +   +       +  L          Q    
Sbjct: 167 -VLKHKQRKAKSERK----LAAMDAHLARV-KDVAAEVERQLGPLERKAKRARTYQGLAD 220

Query: 222 PHIKLSLTGFLD 233
               LSL+  +D
Sbjct: 221 ELADLSLSLAVD 232


>gi|312966699|ref|ZP_07780918.1| recF/RecN/SMC N terminal domain protein [Escherichia coli 2362-75]
 gi|312288651|gb|EFR16552.1| recF/RecN/SMC N terminal domain protein [Escherichia coli 2362-75]
          Length = 550

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 72/402 (17%), Positives = 140/402 (34%), Gaps = 76/402 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-----SFLSP-----GRGF 56
           ++ L + +FR ++ L + F+   T+ +G+NG GKT+IL AI      F++      G G 
Sbjct: 66  LRRLTLKDFRRFSLLEIKFEEDLTVIIGNNGKGKTSILYAIAKTLSWFVANILKEGGSGQ 125

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R +   D+       +    +     +GL  + I+L      ++   +  D  ++   +L
Sbjct: 126 RLSELTDIKNDAENRYADVSSTFFFGKGLKSVPIRLSRS---ALGTAERRDSEVKPARDL 182

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
               R+                   + ++   FA+      R   F R  +  N    E 
Sbjct: 183 ADIWRVI---------------NEAKTINLPTFALYNV--ERSQPFNRNTKD-NAGRREE 224

Query: 177 YFDSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
            FD ++  ++    +               I+ +SS I E  Q+ N       L   +DG
Sbjct: 225 RFD-AYSQALGGAGRFDHFVEWYIYLHKRTISDISSSIKELEQQVN------DLQRSVDG 277

Query: 235 KFDQSFCALKEEYAKKLFDGRKM-----------DSMSRRTL-----------------I 266
               S  +L E+   KL +  +            +S+ +  +                 +
Sbjct: 278 GM-VSVKSLLEQMKLKLSEASERNDAAVSSKMVTESVQKSIVEKSICSVVPSISKIWVEM 336

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA-----HARLISNTTGFAPILLLDE 321
                 + V      +TI   S G++  + +   LA        L+ N      I+L+DE
Sbjct: 337 TTGSDLVKVTNDGHDVTIDQLSDGQRVFLSLVADLARRMVMLNPLLENPLEGRGIVLIDE 396

Query: 322 ISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNET 361
           I  HL    +  +   +  +    Q  +T     V  ++ + 
Sbjct: 397 IELHLHPKWQQEVILNLRSVFPNIQFIITTHSPIVLSTIEKR 438


>gi|15895343|ref|NP_348692.1| DNA repair protein recN, ATPase [Clostridium acetobutylicum ATCC
           824]
 gi|15025061|gb|AAK80032.1|AE007710_2 DNA repair protein recN, ATPase [Clostridium acetobutylicum ATCC
           824]
 gi|325509488|gb|ADZ21124.1| DNA repair protein recN, ATPase [Clostridium acetobutylicum EA
           2018]
          Length = 570

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 16/115 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI  F     + + F+    +  G+ G GK+ +++AI+++  G+  R        R
Sbjct: 2   LLQLNIKNFALIEDITINFEKGFNVLFGETGAGKSILIDAINYVLGGKSSRG-----FIR 56

Query: 67  IGS-----PSFFSTF-----ARVEGMEGLADISIKLETRDDRSVRCL-QINDVVI 110
            G       + F+       A +E M+   +  + +     +S + + +IN   +
Sbjct: 57  TGEKRTYVEAIFTIENDKTKAELENMDIEYEDCVIVSRETFKSGKSIAKINGKSV 111


>gi|291524427|emb|CBK90014.1| Predicted ATP-binding protein involved in virulence [Eubacterium
          rectale DSM 17629]
 gi|291527555|emb|CBK93141.1| Predicted ATP-binding protein involved in virulence [Eubacterium
          rectale M104/1]
          Length = 457

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
          KI+ L +  +R + + + V + +  +F G NG GKT++LEA
Sbjct: 5  KIQELGLRNYRGFDNKKFVLNPRMNVFAGKNGSGKTSVLEA 45


>gi|284929017|ref|YP_003421539.1| RecF/RecN/SMC N-terminal domain-containing protein
          [cyanobacterium UCYN-A]
 gi|284809476|gb|ADB95181.1| RecF/RecN/SMC N-terminal domain-containing protein
          [cyanobacterium UCYN-A]
          Length = 1008

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 9  FLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L +  F +Y  + L F         G NG GK+++LEAI++   G+G R +S  DV   
Sbjct: 5  KLTLKNFLSYQDVTLDFQGLHTVCICGANGAGKSSLLEAIAWTVWGQG-RTSSDEDVIHA 63

Query: 68 GSPSFFSTFARV 79
           +    + F  +
Sbjct: 64 SADYVRTDFVFI 75


>gi|307128827|ref|YP_003880843.1| ATP binding protein [Dickeya dadantii 3937]
 gi|306526356|gb|ADM96286.1| ATP binding protein [Dickeya dadantii 3937]
          Length = 509

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 69/420 (16%), Positives = 135/420 (32%), Gaps = 63/420 (15%)

Query: 5   IKIKFLNISE---FRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAI-----SFLSPG 53
           +KIK   +     F +  +L      + +  T+ VG+NG GKT+IL+A+       ++  
Sbjct: 24  MKIKQFRLHNVGRFTSLDALIAPTADYPSNVTVLVGNNGAGKTSILQALATSLSWLVARV 83

Query: 54  RGFRRASYADVTRIGSPSFFSTFARVEGM--------------EGLADISIKLETRDDRS 99
           R  + +        G+ +   T A +E M              +     ++       + 
Sbjct: 84  RSEKGSGSG--INEGTITNGHTSAAIEVMAQDTPPLSGHAADNDAEYHWTLAKTRSGKKG 141

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
               Q+N      V  L  H R +          + +   +ER   LD  +   +  H +
Sbjct: 142 QHTSQLN-----AVSALADHYRSALTQNEQSSLPLIAFYPVER-SVLDIPLKIKNKHHFQ 195

Query: 158 RMIDFERLMRG-----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++  ++  +       R         D     +    +  L        +++   +    
Sbjct: 196 QVDGYDNALNQGVDFRRFFEWFREREDIE-NENDGVVLTNLFESNPEGVLKVFEDIEDAD 254

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
               + E F    LS     + K   +   L +E   K  D +     S  T   P  S+
Sbjct: 255 YRVDKLEIFDWAGLS----EEFKKLNNALKLMQEVQDKAKDPQLNAVRSAITAFMPGFSN 310

Query: 273 LIVDY----------CDKAITIAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPIL 317
           L V              +A  +   S GE+ ++ +       LA     + N      I+
Sbjct: 311 LKVRRKPRLHMSVDKNGEAFNVLQLSQGEKSLMALVGDIARRLAIMNPTLDNPLHGQGIV 370

Query: 318 LLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           L+DE+  HL    + ++   +T      Q  +T     V     +      + N +   +
Sbjct: 371 LIDEVDMHLHPSWQRSIIERLTTTFPHCQFILTTHSPLVISDYKDVL-VYSLDNGELTVV 429


>gi|268323972|emb|CBH37560.1| hypothetical protein containing RecF/RecN/SMC N terminal domain
          [uncultured archaeon]
          Length = 920

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + +K L +  +R Y ++ +         +G NGVGKT ++E+I ++  G      +  ++
Sbjct: 1  MLLKTLTLRNYRKYKNVNVEIPDGVIGIIGLNGVGKTTLIESIGWVLFGH-HAARTTKEL 59

Query: 65 TRIGSPSF 72
           +    S 
Sbjct: 60 IKREGASH 67


>gi|188992197|ref|YP_001904207.1| Recombination protein N [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167733957|emb|CAP52163.1| Recombination protein N [Xanthomonas campestris pv. campestris]
          Length = 583

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 95/278 (34%), Gaps = 38/278 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 31  LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 85

Query: 67  IGSPSF-----FSTFAR--------VEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+        F   A            ++  A   ++   R D   R   IN   +   
Sbjct: 86  HGADRAELSAEFQLPAEHPGLTWLADNELDDDAQCQLRRIIRADGGSRA-WINGRPVTSS 144

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168
            + +L   L           + +  S      LD   R     +   R+    ++ L+  
Sbjct: 145 QLSDLAARLVEIHGQHEHQALMARNSQL--ALLDAYARNSAQREQV-RQASQRWQALLDE 201

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQKENFPHI 224
           R+ L  +G   S     +E Q+AEL       R ++    I AL +              
Sbjct: 202 RDALSAQGDV-SDRIGFLEHQLAEL------EREDLDPAAIAALDTNHRRQAHATALIGA 254

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
             S+   L+G    S   L ++    L    + +    
Sbjct: 255 CESVVQQLNGDEGPSALGLLQDSRHDLARVAEHEPRLG 292


>gi|163839566|ref|YP_001623971.1| DNA repair protein [Renibacterium salmoninarum ATCC 33209]
 gi|162953042|gb|ABY22557.1| DNA repair protein [Renibacterium salmoninarum ATCC 33209]
          Length = 569

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 42/303 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + I +    A   L      T+  G+ G GKT ++ A+  L   R       A   R
Sbjct: 2   IEEIRIRDMGVIAEATLPLGPGFTVVTGETGAGKTMVVTAVGLLLGARS-----DAGAVR 56

Query: 67  IGSPS------------------FFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
           +G+ +                       A +E  +G A++ +      D   +  +    
Sbjct: 57  LGAKAASAEATVQLPSGHEALTRAEEAGAEIENFDGAAELLLARSVGSDGRSKAFVGGRS 116

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA-IDPRHRRRMIDFERLM 166
             + V+ E+   L +       D+I    ++ +R  LD    A            +ER  
Sbjct: 117 TPVGVLAEIGAELVVV--HGQSDQIRLKSAVAQREALDSFAGAGFGTDLAEYRSQYER-- 172

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
                       +         + A    ++ +A  E I+ L     E    E      +
Sbjct: 173 ------WRTAQTELESLRHAGRERAREAEELTLALAE-IDELDPQAAE---DEELKAESV 222

Query: 227 SLTGFLDGKFDQS---FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            L+     +   S      + EE+A+       +D   R         D++  + ++   
Sbjct: 223 KLSNVESLRLAASAAHEALIAEEFAEVADANTLVDGAKRALEQVAEHDDVLRVHGERLAE 282

Query: 284 IAH 286
             +
Sbjct: 283 AGY 285


>gi|116193581|ref|XP_001222603.1| hypothetical protein CHGG_06508 [Chaetomium globosum CBS 148.51]
 gi|88182421|gb|EAQ89889.1| hypothetical protein CHGG_06508 [Chaetomium globosum CBS 148.51]
          Length = 1069

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 12/135 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
            I  + +  F  Y            + +G NG GK++++ AI  L  G       R +++
Sbjct: 91  AIVRVKVENFVTYEEAEFFLGPNLNMVIGPNGTGKSSLVCAIC-LGLGYSSNVLGRASAF 149

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119
            +  + G           +  E   +  + L  R + + R   IN      R + +L + 
Sbjct: 150 GEFVKHGKDEAGIEVELQKLPEHSENPIVGLTIRREDNSRKFTINGQRASHREIQKLMRS 209

Query: 120 LRISW-----LVPSM 129
            RI        +P  
Sbjct: 210 FRIQIDNLCQFLPQD 224


>gi|329765638|ref|ZP_08257212.1| SMC domain-containing protein [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137882|gb|EGG42144.1| SMC domain-containing protein [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 692

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + + +F +++  RL F    T+FVG NG GK++I++AI+F   G+   R S   + +
Sbjct: 2   ITAIELGDFLSHSQTRLEFGNGVTVFVGQNGAGKSSIIDAITFALFGQ-HTRKSNKGLIK 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            GS   F            A +   +  +  ++VR +     +     E
Sbjct: 61  RGSNQGF------------AKVEFNINGKQYQAVRKIDNKGGLAAKFSE 97



 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG----- 342
           S GEQ  V + + L  A L+  +     +++LDE + HLD +++ AL  +++ +      
Sbjct: 596 SGGEQVSVALALRLGMASLLGASN--LNLMILDEPTTHLDAERKKALVGVLSQLSDIANI 653

Query: 343 ---SQIFMTGTDKSVFDS 357
               Q  +   D  +F+ 
Sbjct: 654 GKPMQFIIITHDAEIFED 671


>gi|307594762|ref|YP_003901079.1| SMC domain-containing protein [Vulcanisaeta distributa DSM 14429]
 gi|307549963|gb|ADN50028.1| SMC domain protein [Vulcanisaeta distributa DSM 14429]
          Length = 803

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 4/113 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA--DV 64
           I  + I  FR+    + V         G NG GKT+ILEAI+    G  + R  Y   D+
Sbjct: 2   ITKVEIENFRSIMRGKAVITEGINFIHGPNGSGKTSILEAIAIALYGSEWVRGKYRLSDL 61

Query: 65  TRIGSPSFFS--TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            R G+ S      +  ++G + L   +   E   +     L      +   D 
Sbjct: 62  VRRGASSAVIRLEYVGIDGRKYLIQRAFSTERTLESQTYVLDEGGRRVAARDR 114


>gi|226226600|ref|YP_002760706.1| chromosome segregation protein [Gemmatimonas aurantiaca T-27]
 gi|226089791|dbj|BAH38236.1| chromosome segregation protein [Gemmatimonas aurantiaca T-27]
          Length = 1191

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++  L +  F+ +A  L  VF+   T  VG NG GK+N+ +A+ ++      R  R A 
Sbjct: 1   MRLTKLEVHGFKAFADHLEFVFEKGVTAIVGPNGSGKSNVSDAVRWVLGEQRARAMRGAK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS +             +  EG   +  K      R +R       +N    R
Sbjct: 61  MEDVIFHGSSARKAVNMAEVSLHFDNTEGELPVPFKEVVITRRLLRSGESEYLLNRAPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L     +      +D + S    +RR   +
Sbjct: 121 LRDIQDLVRGTGLGADSGVVIESKMIDALLSDRPDDRRELFE 162


>gi|219120977|ref|XP_002185720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209582569|gb|ACI65190.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 220

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 17/136 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63
           IK + +  F  +  LR+          G NG GK+ IL AI      S  R  R  +   
Sbjct: 66  IKEVYVENFMCHPKLRVTLCRNVNFIHGQNGSGKSAILAAIQICLGASASRTHRARNLKG 125

Query: 64  VTRIGSPSFFSTFARV----EGMEG--------LADISIKLETRDDRSVRCL--QINDVV 109
           + R  +    +   RV    +G +G           +   +  R   +   L        
Sbjct: 126 LVRKDAGPNATAKVRVTLWNQGNDGYLPETYGDSITVERTISLRGGYNGYKLLDHNGKER 185

Query: 110 IRVVDELNKHLRISWL 125
            R   +L++ L +  +
Sbjct: 186 SRNKKDLHEMLDMLNI 201


>gi|198416844|ref|XP_002121540.1| PREDICTED: similar to SMC5 protein [Ciona intestinalis]
          Length = 1071

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 5/123 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-- 64
           I  +N+  F  Y      F+ +  + +G NG GK++I+ AI     GR    A   ++  
Sbjct: 30  IIRINVQNFLTYDQCTFRFNPKLNVIIGPNGTGKSSIVCAICIGLAGRTSLLARAKEIGD 89

Query: 65  -TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHLR 121
             + G                          ++ ++     +N   V ++ ++E    L 
Sbjct: 90  YIQHGKQQATIEVELYNVPHCAIIRRTLSHGQNGKTASTWHLNGNQVNVKQIEETVGKLN 149

Query: 122 ISW 124
           I  
Sbjct: 150 IQL 152


>gi|257060802|ref|YP_003138690.1| exonuclease SbcC [Cyanothece sp. PCC 8802]
 gi|256590968|gb|ACV01855.1| exonuclease SbcC [Cyanothece sp. PCC 8802]
          Length = 1008

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 9  FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L +  F +Y    L F   HT    G NG GK+++LEAI+++  G+  R AS  DV   
Sbjct: 5  ELTLKNFLSYQQATLNFRGLHTACICGANGAGKSSLLEAITWVIWGKS-RAASDDDVIHG 63

Query: 68 GSPSFFSTFARVEGME 83
          G       F  +   E
Sbjct: 64 GCDDVRVDFQFISNQE 79


>gi|38637815|ref|NP_942789.1| hypothetical protein PHG151 [Ralstonia eutropha H16]
 gi|32527153|gb|AAP85903.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 571

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 108/363 (29%), Gaps = 67/363 (18%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ + I  FR                +G    GK++IL+AI      R  R A      
Sbjct: 3   RLRKIEIRHFRGIQHFTWWPGPGLNALIGPGDAGKSSILDAIDLCLGAR--RTA------ 54

Query: 66  RIGSPSFFSTFA----RVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHL 120
           + G   FF         +E   G  D ++K        +R  +  +  V+   D   + +
Sbjct: 55  QFGDHDFFRMNVDQPIVIEITVGELDDALKNFEAYGLYLRGFRAEDGAVLEEPDAHCETV 114

Query: 121 RISWLVPSMD-----RIFSGLSM-----ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
               L    D     ++ S  +          + DR+   I P       D       +N
Sbjct: 115 LTIRLTVQSDLEPQWQLISERAAAQGLTRHLAWADRL--RIAPGWLGASGD-------QN 165

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                G   +          A L      AR+   +   + + + +Q+      +L +  
Sbjct: 166 LSWRRGSVLNRLSDERADASAALVRAGRDARLRFGDEAQNQLGQALQQVLATATELGVPV 225

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             +               K L D   +        +          +    + +     G
Sbjct: 226 GGEV--------------KALLDAHAISVTGGAIAL----------HDAAGVPLRSLGLG 261

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS----QIF 346
             ++++ G+  A A           ++L+DEI   L+  +   L   +         Q+F
Sbjct: 262 SGRLLVAGLQRAAAM-------ETSVVLVDEIETGLEPHRIYRLLVTLGAKEPAPPLQVF 314

Query: 347 MTG 349
           +T 
Sbjct: 315 LTT 317


>gi|18310698|ref|NP_562632.1| chromosome segregation protein SMC [Clostridium perfringens str.
           13]
 gi|18145379|dbj|BAB81422.1| chromosome partition protein [Clostridium perfringens str. 13]
          Length = 1185

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A    L F    T  VG NG GK+N+ +++   L     +  R A 
Sbjct: 1   MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+       +A+V      +   + L+  D +  R L         IN+   R
Sbjct: 61  MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +N  +                +D I SG   +RR  L+
Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162


>gi|18313677|ref|NP_560344.1| purine NTPase [Pyrobaculum aerophilum str. IM2]
 gi|18161228|gb|AAL64526.1| purine NTPase, probable [Pyrobaculum aerophilum str. IM2]
          Length = 702

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 3/111 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYAD 63
           I+ + +  F+ +      F        G NG GKT+I+EAIS    G  + R     +AD
Sbjct: 2   IRRIELLNFKAHGKASFKFGDGVNFIYGPNGSGKTSIMEAISVALFGSQWVRKVGGKWAD 61

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             R G+ S             +  +    E     S   + IN  +I   D
Sbjct: 62  YLRRGATSGEVKLYMSHMGSEILIVRKFGENGTTPSGTYMSINGSIIARGD 112



 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 13/184 (7%)

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +     E+++  +  +I   R E I  L   +          +I+ +L           
Sbjct: 524 KAQLKDAESELESVKTEIEKMRGE-IEKLDKALA------TGKNIRNTLGEIKPLARQIL 576

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVG 298
             A+ EE        R  +S     L+  +   +  +      I     S GEQ ++ + 
Sbjct: 577 LRAINEELNYVFLKLRHKESFKSAQLVELNGRYVARISTPTGYIEHNLLSLGEQNLLALS 636

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI--FMTGTDKSVFD 356
           I +A AR +    G AP ++LDE + HLDE+ R  +  +V D+ S +   +  +    F+
Sbjct: 637 IRVALARAL---LGGAPFMMLDEPTEHLDEEHRRRIVELVRDLTSVVPTIVVTSHLGEFE 693

Query: 357 SLNE 360
            + +
Sbjct: 694 EVAD 697


>gi|148544382|ref|YP_001271752.1| condensin subunit Smc [Lactobacillus reuteri DSM 20016]
 gi|184153746|ref|YP_001842087.1| cell division protein [Lactobacillus reuteri JCM 1112]
 gi|227363193|ref|ZP_03847327.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus reuteri MM2-3]
 gi|325682702|ref|ZP_08162218.1| cell division protein Smc [Lactobacillus reuteri MM4-1A]
 gi|148531416|gb|ABQ83415.1| condensin subunit Smc [Lactobacillus reuteri DSM 20016]
 gi|183225090|dbj|BAG25607.1| cell division protein [Lactobacillus reuteri JCM 1112]
 gi|227071799|gb|EEI10088.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus reuteri MM2-3]
 gi|324977052|gb|EGC14003.1| cell division protein Smc [Lactobacillus reuteri MM4-1A]
          Length = 1187

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 126/385 (32%), Gaps = 50/385 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  L +  F+++A    + F+   T  VG NG GK+NI+EAI ++   +     R   
Sbjct: 1   MQLLSLTLDGFKSFAQKTTIKFEPGMTGIVGPNGSGKSNIIEAIQWVMGEQSAHHLRGDR 60

Query: 61  YADVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIR 111
            ADV   GS           +         LA    +L               IND  +R
Sbjct: 61  MADVIFNGSSDRKPLNRALVSITLDNSDHYLASEFTELTITRKIYRNGDSEYLINDQNVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+G  ++RR  ++ +      ++++     E
Sbjct: 121 LKDITDLFIDSGLGRESFSIISQGRIEEIFNGKPIDRRGIIETVAG--VAKYKKNKETAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL-IMEYVQKENFP 222
           + +      +      +   S +E Q+  L  + +    + +       +++  Q     
Sbjct: 179 KRL---TTTMENLNRVNDIISELEKQIEPL-EEQSAIAQDYLEQKKQFDVLDRTQTVRHY 234

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD-SMSRRTLIGPHRSDLIVDYCDKA 281
                    L  K  Q+   +K+   +   D +++D    +R  +   +  L     ++ 
Sbjct: 235 DEYYGKLTKLGAKLKQAEEMVKDYQRQAGHDRQQLDNLKQKRQQLNATKDRLQAIILNQT 294

Query: 282 --------------ITIAHGSTGEQKVVL----VGIFLAHARLISNTTGFAPI---LLLD 320
                         +        ++++      +   L   +               L++
Sbjct: 295 EAIAKYENQQSVSSVRREQRENEQRRLTAQQAELNARLKEVKASQRANDEQLAEQKALIN 354

Query: 321 EISAHLDEDKRNALFRIVTDIGSQI 345
              A  +  ++ +    +  +  Q+
Sbjct: 355 SQQAEFEAARKMSSSERIATLKQQV 379


>gi|269798340|ref|YP_003312240.1| ATP-dependent endonuclease of the OLD family- like protein
          [Veillonella parvula DSM 2008]
 gi|269094969|gb|ACZ24960.1| ATP-dependent endonuclease of the OLD family- like protein
          [Veillonella parvula DSM 2008]
          Length = 555

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          + IK+++I  +RN A + L F      FVG+N VGK+N L+ +  +    GF
Sbjct: 1  MYIKWMHIENYRNLADVTLSFHNDINYFVGENSVGKSNFLDLLEIIMECHGF 52


>gi|168217003|ref|ZP_02642628.1| chromosome segregation protein SMC [Clostridium perfringens NCTC
           8239]
 gi|182380903|gb|EDT78382.1| chromosome segregation protein SMC [Clostridium perfringens NCTC
           8239]
          Length = 1185

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A    L F    T  VG NG GK+N+ +++   L     +  R A 
Sbjct: 1   MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+       +A+V      +   + L+  D +  R L         IN+   R
Sbjct: 61  MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +N  +                +D I SG   +RR  L+
Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162


>gi|242016837|ref|XP_002428912.1| structural maintenance of chromosomes smc1, putative [Pediculus
          humanus corporis]
 gi|212513707|gb|EEB16174.1| structural maintenance of chromosomes smc1, putative [Pediculus
          humanus corporis]
          Length = 79

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63
          +K + +  F++Y     +      T  +G NG GK+N+++AISF+   +    R    +D
Sbjct: 4  LKLIELENFKSYKGKQIIGPLKSFTAIIGPNGSGKSNLMDAISFVMGEKTTSLRVKRLSD 63

Query: 64 VTR 66
          +  
Sbjct: 64 LIH 66


>gi|168214193|ref|ZP_02639818.1| chromosome segregation protein SMC [Clostridium perfringens CPE
           str. F4969]
 gi|170714289|gb|EDT26471.1| chromosome segregation protein SMC [Clostridium perfringens CPE
           str. F4969]
          Length = 1185

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A    L F    T  VG NG GK+N+ +++   L     +  R A 
Sbjct: 1   MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+       +A+V      +   + L+  D +  R L         IN+   R
Sbjct: 61  MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +N  +                +D I SG   +RR  L+
Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162


>gi|169342728|ref|ZP_02863769.1| chromosome segregation protein SMC [Clostridium perfringens C str.
           JGS1495]
 gi|169299234|gb|EDS81304.1| chromosome segregation protein SMC [Clostridium perfringens C str.
           JGS1495]
          Length = 1185

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A    L F    T  VG NG GK+N+ +++   L     +  R A 
Sbjct: 1   MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+       +A+V      +   + L+  D +  R L         IN+   R
Sbjct: 61  MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +N  +                +D I SG   +RR  L+
Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162


>gi|218247877|ref|YP_002373248.1| exonuclease SbcC [Cyanothece sp. PCC 8801]
 gi|218168355|gb|ACK67092.1| exonuclease SbcC [Cyanothece sp. PCC 8801]
          Length = 1008

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 9  FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L +  F +Y    L F   HT    G NG GK+++LEAI+++  G+  R AS  DV   
Sbjct: 5  ELTLKNFLSYQQATLNFRGLHTACICGANGAGKSSLLEAITWVIWGKS-RAASDDDVIHG 63

Query: 68 GSPSFFSTFARVEGME 83
          G       F  +   E
Sbjct: 64 GCDDVRVDFQFISNQE 79


>gi|259146222|emb|CAY79481.1| Smc2p [Saccharomyces cerevisiae EC1118]
          Length = 1170

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVEELIIDGFKSYATRTVITDWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+  + G          +            G      IS+  +     + + L IN 
Sbjct: 61  SLQDLIYKRGQAGVTKASVTIVFDNTDKSNSPIGFTNSPQISVTRQVVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
                   L     +   + + + +    
Sbjct: 120 HRAPQQSVLQLFQSVQLNINNPNFLIMQG 148


>gi|291288119|ref|YP_003504935.1| chromosome segregation protein SMC [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885279|gb|ADD68979.1| chromosome segregation protein SMC [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1111

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 102/304 (33%), Gaps = 45/304 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K K L +  F+++     + F    T  +G NG GK+NIL+AI ++   +     R A 
Sbjct: 1   MKFKSLVVQGFKSFVDKTVIEFPGGITCVIGPNGSGKSNILDAIRWIFGEQSAKELRGAD 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDV 108
             DV   GS     + FA V         S+  +                  R  +IN  
Sbjct: 61  MDDVIFAGSQHRKPTGFAEVSLTLSELPESLTAKWGSFSEITVSRKHYRTGDREYRINGK 120

Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRFL 144
             R+ D                  E  K  +I    P   R F   +       ER++  
Sbjct: 121 KCRLKDIREIFYDSGIGARSISIIEQGKVEKIIQSTPEDLRAFFEETAGVMRFKERKKEA 180

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204
           +R ++     +  R+ D    +R +   L+           + A+ + L   +   R   
Sbjct: 181 ERRLYQ-TKDNLSRVTDIIAEIRAQMETLSVQTDRVKRYRELSAKQSALSKSVIFHRYSK 239

Query: 205 ----INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +  ++  + +     +    K +    ++ +        ++EY  K     + +S 
Sbjct: 240 SFSDLKEITETVNQLKIDLSGYTEKFTKLTNIETEISSKLSTSRKEYNSKNELILQAESE 299

Query: 261 SRRT 264
           S +T
Sbjct: 300 SGKT 303


>gi|115375390|ref|ZP_01462652.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310825201|ref|YP_003957559.1| ATPase-like protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367592|gb|EAU66565.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398273|gb|ADO75732.1| ATPase-like protein [Stigmatella aurantiaca DW4/3-1]
          Length = 328

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 7/94 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + +  +R+ A+  +         VG NG GK+N L+A+  +      R +    +  
Sbjct: 22  LTRVRLRNYRSIAACDVRLGP-LNFLVGPNGAGKSNFLDALRLI--TDALRTSLDHAL-- 76

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
                      R           I+LE +    V
Sbjct: 77  --RDRGGVHQVRRRSSGHPTHFGIRLELQLPEGV 108


>gi|320095083|ref|ZP_08026792.1| hypothetical protein HMPREF9005_1404 [Actinomyces sp. oral taxon
          178 str. F0338]
 gi|319977950|gb|EFW09584.1| hypothetical protein HMPREF9005_1404 [Actinomyces sp. oral taxon
          178 str. F0338]
          Length = 384

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +K+  + +  +RN+A +    + +    VG N  GK+N+L+A+ F+S
Sbjct: 1  MKLTHVELQNWRNFAHIEFDLNTRL-FVVGPNASGKSNLLDALRFIS 46


>gi|159030905|emb|CAO88586.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1176

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 62/166 (37%), Gaps = 26/166 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + +S F+++     + F    T+  G NG GK+NIL+A+ F   L+  +G R   
Sbjct: 2   VYIKKVELSHFKSFGGTTPIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61

Query: 61  YADVT-------RIGSPSFFSTFARVEGMEGLADISIKLETR-----DDRSVRCLQINDV 108
             D+        R  S +  S    +  +    D    +  R              IN  
Sbjct: 62  LPDLVNHSYNSQRHSSEASVSVTFDIADIPDATDRDWTVSRRLKVAKGGSYTSTYYINGE 121

Query: 109 VIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145
               V EL+  L    + P          + RI S  + ERR  +D
Sbjct: 122 TC-TVSELHDQLNRLRIYPEGYNVVLQGDVTRIISMNAKERREIID 166


>gi|49481891|gb|AAT66657.1| DNA repair and genetic recombination protein [Geobacillus
           stearothermophilus]
          Length = 573

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 91/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G+       A +EG+  L D           + ++  D                 +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCWQKCXDVGIDASDGMIVLRRDIFANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++    + ++   L           +           LD             +  + R 
Sbjct: 112 KLVTTAXLRDIGATLXDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  R   L          S  E QMA         R++++       +E    E     +
Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + AL++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|159116626|ref|XP_001708534.1| SMC4-like protein [Giardia lamblia ATCC 50803]
 gi|157436646|gb|EDO80860.1| SMC4-like protein [Giardia lamblia ATCC 50803]
          Length = 1435

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 7  IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYA 62
          +  L +  F++YA   +   F    +  +G NG GK+N+++++ F+     R  R +  A
Sbjct: 6  LTKLRLVNFKSYAGEHVLGPFKPSFSCILGANGSGKSNVIDSLLFVFGWRARALRHSRLA 65

Query: 63 DVTRIGSPSFFSTFARVE 80
          D+    S       ARV+
Sbjct: 66 DLIHTSSEHPELDHARVD 83


>gi|297530631|ref|YP_003671906.1| chromosome segregation protein SMC [Geobacillus sp. C56-T3]
 gi|297253883|gb|ADI27329.1| chromosome segregation protein SMC [Geobacillus sp. C56-T3]
          Length = 1187

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L++  F+++A  + + F    T  VG NG GK+NI +AI ++      +  R A 
Sbjct: 1   MFLKRLDVIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS S            ++  +G   +  +  +   R  R       IN    R
Sbjct: 61  MEDVIFAGSESRKPLNVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|288930799|ref|YP_003434859.1| SMC domain protein [Ferroglobus placidus DSM 10642]
 gi|288893047|gb|ADC64584.1| SMC domain protein [Ferroglobus placidus DSM 10642]
          Length = 637

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI+ L +  FR+   L + F  + T+ +G N  GKT+IL AI  +
Sbjct: 1  MKIERLEVKNFRSIYDLSVEFG-RITVLIGRNSSGKTSILNAIRVI 45


>gi|238019008|ref|ZP_04599434.1| hypothetical protein VEIDISOL_00870 [Veillonella dispar ATCC
          17748]
 gi|237864492|gb|EEP65782.1| hypothetical protein VEIDISOL_00870 [Veillonella dispar ATCC
          17748]
          Length = 576

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 1  MTNRIKIKFLN-ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRR 58
          M  ++ IK +  IS +RN +   +VFD      +G+N +GKTNILE ++  LS G+ F+ 
Sbjct: 1  MKGKMYIKEIKTISNYRNLSGQSMVFDKDLNYIIGENNIGKTNILELLNIILSEGK-FKE 59

Query: 59 ASYADV 64
          A +AD+
Sbjct: 60 ADFADL 65


>gi|227544366|ref|ZP_03974415.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus reuteri CF48-3A]
 gi|300909773|ref|ZP_07127234.1| cell division protein Smc [Lactobacillus reuteri SD2112]
 gi|227185629|gb|EEI65700.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus reuteri CF48-3A]
 gi|300893638|gb|EFK86997.1| cell division protein Smc [Lactobacillus reuteri SD2112]
          Length = 1187

 Score = 58.0 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 109/304 (35%), Gaps = 29/304 (9%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  L +  F+++A    + F+   T  VG NG GK+NI+EAI ++   +     R   
Sbjct: 1   MQLLSLTLDGFKSFAQKTTIKFEPGMTGIVGPNGSGKSNIIEAIQWVMGEQSAHHLRGDR 60

Query: 61  YADVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIR 111
            ADV   GS           +         LA    +L               IND  +R
Sbjct: 61  MADVIFNGSSDRKPLNRALVSITLDNSDHYLASEFTELTITRKIYRNGDSEYLINDQNVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+G  ++RR  ++ +      ++++     E
Sbjct: 121 LKDITDLFIDSGLGRESFSIISQGRIEEIFNGKPIDRRGIIETVAG--VAKYKKNKETAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL-IMEYVQKENFP 222
           + +      +      +   S +E Q+  L  + +    + +       +++  Q     
Sbjct: 179 KRL---TTTMENLNRVNDIISELEKQIEPL-EEQSAIAQDYLEQKKQFDVLDRTQTVRHY 234

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD-SMSRRTLIGPHRSDLIVDYCDKA 281
                    L  K DQ+   +++   +   D +++D    +R  +   +  L     ++ 
Sbjct: 235 DEYYEKLTKLGAKLDQAEAMVRDYQGQADRDQQQLDNLKQKRQQLNATKDRLQAIILNQT 294

Query: 282 ITIA 285
             IA
Sbjct: 295 EAIA 298


>gi|321465331|gb|EFX76333.1| putative SMC5, structural maintenance of chromosome protein 5
           [Daphnia pulex]
          Length = 1244

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 4/122 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62
            I  +++ +F  Y  + L+      + +G NG GK+ I+ AI     G+     R +S +
Sbjct: 19  AIVRIHLKDFMTYNEVELIPGPNLNLILGPNGNGKSAIVSAICLGMAGKPSTIARASSLS 78

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              R G+         +   EG   +  +  T D++S    Q   V    ++++ + L I
Sbjct: 79  GYVRHGASKAI-INIELHNSEGQKFLVTREITLDNKSAWKYQGKPVSSTQIEDIIRKLNI 137

Query: 123 SW 124
             
Sbjct: 138 QV 139


>gi|312899127|ref|ZP_07758505.1| DNA repair protein RecN [Megasphaera micronuciformis F0359]
 gi|310619794|gb|EFQ03376.1| DNA repair protein RecN [Megasphaera micronuciformis F0359]
          Length = 561

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 89/270 (32%), Gaps = 25/270 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I  F     + L F    T+F G+ G GK+ +L+AI  L+  R     + A   R
Sbjct: 2   LQSLHIENFALIEDIYLSFTDGVTVFTGETGAGKSILLDAIGMLAGKR-----ASASFVR 56

Query: 67  IGSPSFFSTFARV-------------EGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G+ +F    A               E     +D  I +  R  R+ R  + +N  ++ +
Sbjct: 57  SGAEAFLVEGAFFLPSGNEGLVAFLEEQHIDTSDGEIIISRRFYRNGRGSVLVNGTLVPL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRGR 169
                  L +  +    D      +    R LD            + +    ++ L R R
Sbjct: 117 ATVRKLGLYLVDIHGQYDSRLIFDTAYHVRLLDSFTEGTCRCRTAYDKTYKTWKNLCRER 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSL 228
           + L  +          ++ Q+ E+         +    L + I      E+    ++ ++
Sbjct: 177 DDLEHDESEKMRLLGILDFQIQEIEEAKLTKGED--EKLEADIRTASHAEHITEGLQTAM 234

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
                 +  Q       E  + L      D
Sbjct: 235 AAMDGSERRQGMTDGIAEIRRSLLKNASYD 264


>gi|182625841|ref|ZP_02953607.1| chromosome segregation protein SMC [Clostridium perfringens D str.
           JGS1721]
 gi|177908875|gb|EDT71367.1| chromosome segregation protein SMC [Clostridium perfringens D str.
           JGS1721]
          Length = 1185

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A    L F    T  VG NG GK+N+ +++   L     +  R A 
Sbjct: 1   MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+       +A+V      +   + L+  D +  R L         IN+   R
Sbjct: 61  MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +N  +                +D I SG   +RR  L+
Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162



 Score = 36.4 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 66/194 (34%), Gaps = 18/194 (9%)

Query: 167  RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            + R +L+ +     S  S+++A++  LG     A  E             ++++    K 
Sbjct: 963  KNRFKLIEDMNSHKSRISTLKARITGLGNVNVNAIEEFKEISEKYNFMTTERDDLEKAKE 1022

Query: 227  SLTGFLDGKFDQSFCALKEEY--AKKLFDGRKMDSMSRRTL-IGPHRSDLIVDYCDKAI- 282
             L   ++    +     ++ +    KLFD    +     +  +     D +    D  + 
Sbjct: 1023 ELLNVIEEMTSKMRVVFRQNFNILNKLFDETFKELFKGGSAKLVLGEGDELTGNIDINVQ 1082

Query: 283  -------TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                    I   S GE+ +  + +  +  ++        P  +LDEI A LD+       
Sbjct: 1083 PPGKKLQNINLMSGGEKVLSAIALLFSILKM-----KPTPFCILDEIEAALDDANVRRYA 1137

Query: 336  RIVTDI--GSQIFM 347
              +      +Q  +
Sbjct: 1138 EFLGKFRDNTQFIV 1151


>gi|151940792|gb|EDN59179.1| structural maintenance of chromosomes [Saccharomyces cerevisiae
           YJM789]
 gi|190406603|gb|EDV09870.1| structural maintenance of chromosome 2 [Saccharomyces cerevisiae
           RM11-1a]
 gi|207345626|gb|EDZ72387.1| YFR031Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256268815|gb|EEU04169.1| Smc2p [Saccharomyces cerevisiae JAY291]
          Length = 1170

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVEELIIDGFKSYATRTVITDWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+  + G          +            G      IS+  +     + + L IN 
Sbjct: 61  SLQDLIYKRGQAGVTKASVTIVFDNTDKSNSPIGFTNSPQISVTRQVVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
                   L     +   + + + +    
Sbjct: 120 HRAPQQSVLQLFQSVQLNINNPNFLIMQG 148


>gi|91202097|emb|CAJ75157.1| hypothetical protein kuste4395 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 698

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K ++I  FR    +++  D   T+FVG N  GKT+      +   G  FR   +++ 
Sbjct: 1   MKLKNIHIKNFRRLEEVQIDLDDGETVFVGPNNSGKTSATVIFRYFLKGNEFRIHDFSE- 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           +RI     F + A  +    L  I + L  + D  +   ++  ++   + +L
Sbjct: 60  SRIREIDHFGS-ANDKKDLNLPSIDLDLWFKIDPDIEFGRVFSLLPNTLSDL 110


>gi|68051267|gb|AAY84898.1| LD32453p [Drosophila melanogaster]
          Length = 1190

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 18/125 (14%)

Query: 4   RIKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRR 58
           ++ +K L +  F++Y     +  FD + T   G NG GK+NIL++I F   +S  +  R 
Sbjct: 11  KMYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRA 70

Query: 59  ASYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIN 106
           ++  D+  + G          +           +G E   +IS+  +       + L IN
Sbjct: 71  SALQDLVYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVTRQVVVGGKNKFL-IN 129

Query: 107 DVVIR 111
             +++
Sbjct: 130 GKLVQ 134


>gi|81428323|ref|YP_395323.1| chromosome seggregation Smc protein [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78609965|emb|CAI55012.1| Chromosome seggregation Smc protein [Lactobacillus sakei subsp.
           sakei 23K]
          Length = 1186

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++K L +S F+++A    + F    T  VG NG GK+NI EAI +       +  R   
Sbjct: 1   MQLKSLVLSGFKSFADKTEINFSDGLTGIVGPNGSGKSNITEAIRWAMGEQSAKSLRGEK 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   G+        A V      +D  +  E  +    R L  N 
Sbjct: 61  MPDIIFAGTDLRPQMNRAEVTLNFDNSDHYLNQELDNVTLTRRLFRNG 108


>gi|134108242|ref|XP_777072.1| hypothetical protein CNBB3040 [Cryptococcus neoformans var.
          neoformans B-3501A]
 gi|50259757|gb|EAL22425.1| hypothetical protein CNBB3040 [Cryptococcus neoformans var.
          neoformans B-3501A]
          Length = 1202

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRG--FRRAS 60
          + ++ L +  F++Y     + F        +G NG GK+N+++AISF+   +    R   
Sbjct: 1  MPLQRLELYNFKSYREKQVISFGDVPFVSIIGPNGAGKSNLMDAISFVLGVKSAQLRSTQ 60

Query: 61 YADVTRIG 68
            D+   G
Sbjct: 61 LKDLIYRG 68


>gi|237756087|ref|ZP_04584664.1| chromosome segregation protein SMC [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691759|gb|EEP60790.1| chromosome segregation protein SMC [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 1172

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 15/124 (12%)

Query: 5   IK--IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFR 57
           +K  I  +N+  F++Y    L +      T  VG NG GK+NI ++I F    +  R  R
Sbjct: 1   MKTYIDRINVYGFKSYGDRHLTIPLGPGFTAIVGPNGAGKSNIGDSIVFCLGIASARAMR 60

Query: 58  RASYADVTRIGSPSFFSTFARVE------GMEGLADISIKLETRDDRSVRCL-QINDVVI 110
                D+    S    + +A VE      G   +    +++  + + S +   +IN   +
Sbjct: 61  ALKLTDLI-FSSKDKSAPYAEVEIVFKNLGAFPINSEEVRISRKVELSGKSTYKINGKTV 119

Query: 111 RVVD 114
           +  +
Sbjct: 120 KQQE 123


>gi|237842191|ref|XP_002370393.1| structural maintenance of chromosome domain-containing protein
           [Toxoplasma gondii ME49]
 gi|211968057|gb|EEB03253.1| structural maintenance of chromosome domain-containing protein
           [Toxoplasma gondii ME49]
 gi|221502848|gb|EEE28562.1| structural maintenance of chromosome domain-containing protein
           [Toxoplasma gondii VEG]
          Length = 1523

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + IK + I  FR Y     + F   +   VG NG GK+N+L AI+F + G G + ++   
Sbjct: 1   MHIKEVTIRGFRTYRHSTTIHFSPGYNCIVGANGSGKSNVLLAIAF-ALGEGGQSSTERR 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
           +      +   +   V+ +    D  + +   D+  +R +
Sbjct: 60  MLLHEGMNERVSDGSVQVVLANEDRRLCMYDDDEVQIRRV 99


>gi|50553158|ref|XP_503989.1| YALI0E15620p [Yarrowia lipolytica]
 gi|49649858|emb|CAG79582.1| YALI0E15620p [Yarrowia lipolytica]
          Length = 1220

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 106/316 (33%), Gaps = 43/316 (13%)

Query: 7   IKFLNISEFRNYASL-RLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           +K + +  F++Y    R+   D+  +  +G NG GK+N+++AISF+   R    R     
Sbjct: 4   LKAIELCNFKSYRDTHRVDLGDSSFSAIIGPNGSGKSNMMDAISFVLGVRSSQLRSTQLK 63

Query: 63  DVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           D+   G            S    S +  VE  +   D+     T         +IN+ V 
Sbjct: 64  DLIYRGRIMRGEEVSSTQSQEATSAYVLVEYEKSNGDLLKLKRTITPSGTSEYRINNKVT 123

Query: 111 ---------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRM 159
                    +  + L K          +++I S    +  + ++    +ID  P + R  
Sbjct: 124 SSGEYNATMKKENILVKARNFLVFQGDVEQIASQSPQDLSKLIEITSGSIDLKPEYDRLK 183

Query: 160 IDFERLMRGRNRLLTEGYFD----------SSWCSSIEAQMAELGVKINIARVEMINALS 209
            + +      N                        +  A+ AE    +   ++  +    
Sbjct: 184 EELDVQTERSNAAWQRRRTYNAEKKHYVELKDRYDAYTAKAAERDEAVVKQQLWRLWQAQ 243

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
            +  E   +       +        +  Q    +  +YA       K +  +++      
Sbjct: 244 KIEDEARDQIEGGDAAIQNAEGAVQEAAQEVENVAAKYASDKKRLLKQERSAKK------ 297

Query: 270 RSDLIVDYCDKAITIA 285
           R+D+I+++  + + +A
Sbjct: 298 RADVILEHKQQLVPVA 313


>gi|14318554|ref|NP_116687.1| Smc2p [Saccharomyces cerevisiae S288c]
 gi|730753|sp|P38989|SMC2_YEAST RecName: Full=Structural maintenance of chromosomes protein 2;
           AltName: Full=DA-box protein SMC2
 gi|468040|gb|AAA17416.1| Smc2p [Saccharomyces cerevisiae]
 gi|836786|dbj|BAA09270.1| chromosome segregation protein SMC2p [Saccharomyces cerevisiae]
 gi|285811926|tpg|DAA12471.1| TPA: Smc2p [Saccharomyces cerevisiae S288c]
          Length = 1170

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVEELIIDGFKSYATRTVITDWDPQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+  + G          +            G      IS+  +     + + L IN 
Sbjct: 61  SLQDLIYKRGQAGVTKASVTIVFDNTDKSNSPIGFTNSPQISVTRQVVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
                   L     +   + + + +    
Sbjct: 120 HRAPQQSVLQLFQSVQLNINNPNFLIMQG 148


>gi|325830879|ref|ZP_08164263.1| chromosome segregation protein SMC [Eggerthella sp. HGA1]
 gi|325487286|gb|EGC89729.1| chromosome segregation protein SMC [Eggerthella sp. HGA1]
          Length = 457

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/252 (18%), Positives = 87/252 (34%), Gaps = 43/252 (17%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++A    L  +      VG NG GK+NI +A+   L     +  R  +
Sbjct: 1   MYLKSLVLKGFKSFADRSVLALEPGIIAVVGPNGSGKSNISDAVLWVLGERNAKHLRGQA 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   GS +  S   A V+ +   +D ++ ++  +    R +         IN VV R
Sbjct: 61  MEDVIFAGSSARKSVGIAEVDLVLDNSDGTLPVDFDEVAVTRRMYRSGESEYLINGVVAR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            +D         L           S+D I      +RR  ++                  
Sbjct: 121 RMDVLDILHDSGLGTGTHSIISQGSLDSILQSKPEDRRALIEEAAG-------------- 166

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENF 221
            +++ + R            ++++A +A +   +       +  L          Q    
Sbjct: 167 -VLKHKQRKAKSERK----LAAMDAHLARV-KDVAAEVERQLGPLERKAKRARTYQGLAD 220

Query: 222 PHIKLSLTGFLD 233
               LSL+  +D
Sbjct: 221 ELADLSLSLAVD 232


>gi|313896552|ref|ZP_07830101.1| chromosome segregation protein SMC [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312974737|gb|EFR40203.1| chromosome segregation protein SMC [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 1187

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 89/275 (32%), Gaps = 41/275 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++K L    F+++A  + + FD   T  VG NG GK+NI +A+ ++      R  R   
Sbjct: 1   MQLKRLEAYGFKSFADRIVVEFDRGITAVVGPNGSGKSNITDAVRWVLGEQNIRMLRGLR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   GS      S        +  +    I  +      R  R     + +ND   R
Sbjct: 61  SEDIIFAGSTARRALSVAEVVLVFDNRDKTLPIDYEEVVVKRRLYRSGESEVYLNDARCR 120

Query: 112 VVDEL-------NKHLRISWL-VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D           H  +S +    ++ I      ERR F +             +  + 
Sbjct: 121 IKDIYRLFADTGIGHDGMSIIGQNRLNDILDSRPEERRVFFEETAG---------ITKYR 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
              +   R L E           +A +  L   +   R E +  L++   +         
Sbjct: 172 TRKQEALRKLREN----------DADLIRLSDIMYAQRAE-LEPLAAQAEKTSAYRELEA 220

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
            +         +  +     +E   + L + R  +
Sbjct: 221 ERRQYRLTSLVQTHEQLVGAQENLMRLLHNDRDEE 255


>gi|168207933|ref|ZP_02633938.1| chromosome segregation protein SMC [Clostridium perfringens E str.
           JGS1987]
 gi|170660747|gb|EDT13430.1| chromosome segregation protein SMC [Clostridium perfringens E str.
           JGS1987]
          Length = 1185

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A    L F    T  VG NG GK+N+ +++   L     +  R A 
Sbjct: 1   MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+       +A+V      +   + L+  D +  R L         IN+   R
Sbjct: 61  MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +N  +                +D I SG   +RR  L+
Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162


>gi|2369708|emb|CAA70738.1| RecN protein [Geobacillus stearothermophilus]
          Length = 143

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R
Sbjct: 2  LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G+       A +EG+
Sbjct: 57 FGAEK-----AEIEGL 67


>gi|298385207|ref|ZP_06994766.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|298262351|gb|EFI05216.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 575

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/365 (13%), Positives = 113/365 (30%), Gaps = 42/365 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + +  FRNY    +  + ++T+ +G N VGKTN++ A+  L      R  S  D 
Sbjct: 1   MILADITLKGFRNYKDAHIKLE-KNTLIIGANDVGKTNLIWAMRLLLD----RSLSDYD- 54

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND---VVIRVVDELNKHL 120
               S  F+        +  L    I  E    +   +    N+         D     +
Sbjct: 55  IEPRSSDFYVLEETNSFVILLHFTDITEECVLSKLRGKISDANEMYMSYNASRDPNTGKI 114

Query: 121 RISWLVPSMDRIFSG-LSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRNRLLTEGYF 178
             +    +   + S   +   R++L+        ++     D +  + + RN L      
Sbjct: 115 SYTIKAGASVELLSDIEAHYYRKYLNI-------KYISCRRDLYAFISKERNFLFQNAKE 167

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
             S     E                ++  + + + E        H     T  ++ +  +
Sbjct: 168 SRSTQEEEED-------------NTLLQEIKTKLQEANNLIPTLHYISKATNSINSELKE 214

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                  +      +   +D     T +    +D  V+                  + + 
Sbjct: 215 MSIYNNNQDVYFDTNSSNIDKFIDSTSVSSKTNDTPVNIGGDGRLNQ---------IYLS 265

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-QIFMTGTDKSVFDS 357
           ++     +         I+ ++E  AHL   ++  L   +++    QIF+T     +   
Sbjct: 266 LWATKHEIERPKLEEVSIVCIEEPEAHLHPHQQQKLATYLSNKICGQIFLTSHSPQITSE 325

Query: 358 LNETA 362
            +  +
Sbjct: 326 FSPNS 330


>gi|255658839|ref|ZP_05404248.1| putative ATP-binding protein [Mitsuokella multacida DSM 20544]
 gi|260849238|gb|EEX69245.1| putative ATP-binding protein [Mitsuokella multacida DSM 20544]
          Length = 340

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          + IK L +  F     L + F     +F+G+NG+GKT+I++A+ 
Sbjct: 1  MYIKHLELENFTVLHELNMDFSRGINVFIGENGMGKTHIMKALY 44


>gi|254197330|ref|ZP_04903752.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|169654071|gb|EDS86764.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
          Length = 536

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/228 (17%), Positives = 77/228 (33%), Gaps = 31/228 (13%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRAS 60
             R  IK + +S F+ + +L L F     + +GDN  GK++IL AI   LS  R    A 
Sbjct: 16  AARCHIKKVVLSNFKKFDTLTLDFQPDLNVLIGDNEAGKSSILLAIDLALSGSRSKVEAL 75

Query: 61  YAD-VTRIGSPSFFSTFARVEGMEGLADISIKLETRDD--RSVRCLQINDV------VIR 111
             D + R  +   F +  +         + + L   DD     RC  +++          
Sbjct: 76  GIDTLLRKQAIDHFLSGKKRVADLPALAVEVYLSDLDDWEAQGRCNSLHENTFGLRFTCE 135

Query: 112 VVDELNKHLRISWLVPSM----------DRIFSGLS-MERRRFLDRMV---FAIDPRHRR 157
             D+    +R     P               F G      R++   ++     I+  +  
Sbjct: 136 PSDDYGDEIRQVLSQPEGNFPFEFYAIRFITFGGQPYGGHRKYAQHLLIDSSQINTDYAH 195

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSS-----IEAQMAELGVKINIA 200
              ++ R +   +   +E     +             + +L  K+++ 
Sbjct: 196 --REYTRKLYQAHATASERAVHENQYRQAKRSFWTDHLRDLNAKLDVK 241


>gi|39996232|ref|NP_952183.1| chromosome segregation SMC protein [Geobacter sulfurreducens PCA]
 gi|28375553|emb|CAD66600.1| SMC protein [Geobacter sulfurreducens]
 gi|39983112|gb|AAR34506.1| chromosome segregation SMC protein, putative [Geobacter
           sulfurreducens PCA]
 gi|298505244|gb|ADI83967.1| chromosome segregation ATPase SMC [Geobacter sulfurreducens KN400]
          Length = 1175

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 138/407 (33%), Gaps = 70/407 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +KIK L+I  F+++   +   F    T  VG NG GK+N+++AI +       +  R  S
Sbjct: 1   MKIKRLDIVGFKSFVDKVSFDFQQGITGIVGPNGCGKSNVVDAIRWAMGEQSAKNLRGRS 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDV 108
             D+   GS              FA  +G      +    I++  R  R       +N  
Sbjct: 61  MEDIIFGGSEFRKPLGMAEVSMVFATDDGRVPAKYLSYSEIQITRRLYRDGESEYFLNKT 120

Query: 109 VIRVVD--ELN-----KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
             R++D  EL           S +      +      E RRF+      +     R+ + 
Sbjct: 121 PCRLMDITELFMDTGVGARAYSIIEQGKIGMILHSKPEERRFIIEEAAGVTKFKARKQVA 180

Query: 162 FERLMRGRNRLLTEG---YFDSSWCSSIEAQMAELGVKINIARVEM--------INALSS 210
            +++   R  LL  G          +S++ Q  +   +    R E+        +   ++
Sbjct: 181 LKKIDLTRQNLLRIGDILSEIKRQLNSLQRQ-VKKAERFREYREELREIEIHASVRRFTA 239

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
           L  E  + E      +S    L    ++    L E         R+ + ++ +  +   +
Sbjct: 240 LDAEKERIEGLLREAVSRESTLTADLERRDLELAEHRLA--LAEREKEVVTAQEGLFRQK 297

Query: 271 SDLIV---DYCDKAITIAHGSTGEQKVVL-VG-----IFLAHARL--ISNTTGFAPILLL 319
           +D+         +   ++     +++V + +      +  A      +   +G   + + 
Sbjct: 298 ADIQACESRIEFQRRELSSLERQQERVAVELATAGSQLVAAEEEFARLVEQSGSFAVEVA 357

Query: 320 DE--------------------ISAHLDEDKRNA--LFRIVTDIGSQ 344
            E                    ++AHLDE +R    L   +  + +Q
Sbjct: 358 GEEESLQTREMELEEMTGAERELAAHLDEARRELFSLLSEIAQLNNQ 404


>gi|257215870|emb|CAX83087.1| structural maintenance of chromosomes protein 3 [Schistosoma
           japonicum]
          Length = 823

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y        F   H I VG NG GK+N  +AI   LS          
Sbjct: 1   MYIKKVIIQGFRSYRDQTCPEEFSPHHNIIVGRNGSGKSNFFQAIQFVLSDEYSHLSNQE 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
                          A VE +   +D  I  +  +    R +
Sbjct: 61  RQNLLHEGTGPRVISAYVEMIFDNSDNRIPFDKNEVSLRRII 102


>gi|23098983|ref|NP_692449.1| chromosome segregation SMC protein [Oceanobacillus iheyensis
           HTE831]
 gi|22777211|dbj|BAC13484.1| chromosome segregation SMC protein [Oceanobacillus iheyensis
           HTE831]
          Length = 1188

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 119/387 (30%), Gaps = 61/387 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L    F+++   + + F +  T  VG NG GK+NI +AI ++      +  R + 
Sbjct: 1   MYLKRLESKGFKSFAERIGVDFVSGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   GS      +       ++  +    +  +  +   R  R       IN    R
Sbjct: 61  MEDIIFQGSETRKALNVAEVTLVLDNQDQRVPLDYEEVSVTRRVYRSGESEFYINKQPCR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
            + ++      S L      I S           + ERR   +     +  + R++  ++
Sbjct: 121 -LKDIIDLFMDSGLGREAFSIISQGKVEEILSSKAEERRTIFEEAAGVLKYKQRKKKAEY 179

Query: 163 ERLMRGRNRLLTEG--YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           +      N    E   Y        ++ Q      +      ++   L    +  +  E 
Sbjct: 180 KLAETQENLNRVEDIIYEIEQQIDPLKEQ-----AERANRYQQLHGQLRDTEVALLITE- 233

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
              I       L     +     K++   K  + R  +     + I      L       
Sbjct: 234 IERIHKEWQVVLQDLEVEKDNQAKQQQQVKSVENRLFEQKQVSSTIDESLEKLQSTLLQA 293

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
                                     +    G     LLDE S HL E  R  L + + +
Sbjct: 294 T-----------------------EQLEKYEGRKQ--LLDERSKHLGE-NREKLIQQLQE 327

Query: 341 IGSQIFMTG----TDKSVFDSLNETAK 363
           I  QI +      T++S    + ++ K
Sbjct: 328 IDQQIEVLANDLKTEQSNLADIQQSKK 354


>gi|325677955|ref|ZP_08157597.1| chromosome segregation protein SMC [Ruminococcus albus 8]
 gi|324110509|gb|EGC04683.1| chromosome segregation protein SMC [Ruminococcus albus 8]
          Length = 1184

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 101/317 (31%), Gaps = 49/317 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + ++ L +  F+++     L F    T  VG NG GK+NI +A+ ++      +  R   
Sbjct: 1   MYLRGLELQGFKSFPDKTVLSFGKGITAVVGPNGSGKSNISDAMRWVMGEQSSKALRGEK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
            + V   G  +     F      ++  +   DI  ++ +   +  +       IN   +R
Sbjct: 61  MSGVIFHGCETRKESPFAQVTLIIDNEDRALDIDDEVVSVSRKLYKNGDSEYLINGSPVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +  I +G   +RR   +        R++       
Sbjct: 121 LKDVNELFMDTGLGKDGYSIVGQGRIADIVNGKGSDRRDIFEEAAGVAKFRYK------- 173

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI--NIARVEMINALSSLIME------- 214
                +              + +   +AEL  +I     + E       L  E       
Sbjct: 174 -----KQEAERRLVEAEDNIARLTDILAELEGRIGPLEKQCEKAKKFKVLDDEKTALEVS 228

Query: 215 -YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
            +V K      KL+ T       ++ + AL +E +    + +  + + +      +  D+
Sbjct: 229 VWVTKLEQNRAKLAETEERIKLLNEQYSALSDELSDA--EKQIEEDLRQSAQCAANADDI 286

Query: 274 IVDYCDKAITIAHGSTG 290
                D        S G
Sbjct: 287 SAKIHD----AEMASRG 299


>gi|15829185|ref|NP_326545.1| ABC transporter ATP-binding protein [Mycoplasma pulmonis UAB CTIP]
 gi|14090129|emb|CAC13887.1| P115-LIKE (Mycoplasma hyorhinis) ABC TRANSPORTER ATP-BINDING
           PROTEIN [Mycoplasma pulmonis]
          Length = 979

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 33/223 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +K+  +    F+++A  ++L FD      +G NG GK+NI +AI   L     +  R  +
Sbjct: 1   MKLIKIQAHGFKSFAEPIQLSFDGGVAGIIGPNGSGKSNINDAIKWVLGEQSSKSLRGDN 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGLADI-----SIKLETRDDRSVRCLQINDVVI 110
             DV   GS +       S     +     + +     +I  E    +      IND ++
Sbjct: 61  MEDVIFAGSKNVKEMNKASVTLTFDNSNNASSVPHKVFTITRELERGKGSNIYYINDEIV 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRM 159
           R   ++      S +  S   I S             +RR   +    V     R +  +
Sbjct: 121 R-YKDIKDIALESGISKSSLAIISQGTVSDIAEASPEDRRGIFEEAAGVSKYKSRKKEAL 179

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
              E+     N  L +     +    +E Q+  L  +   AR+
Sbjct: 180 RKLEKT----NESLEKIQ---TVILELEKQLKPLKNQAEKARI 215


>gi|167752977|ref|ZP_02425104.1| hypothetical protein ALIPUT_01240 [Alistipes putredinis DSM 17216]
 gi|167659291|gb|EDS03421.1| hypothetical protein ALIPUT_01240 [Alistipes putredinis DSM 17216]
          Length = 105

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 12/102 (11%)

Query: 5   IKIKFLNISEFRNYAS------LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           + +  L +  FR YA       L + F     + +G+N  GKT I++AI ++   +    
Sbjct: 1   MYLSILRLWNFRKYAGADNKPGLEIHFQKGVNVLIGENDSGKTAIVDAIRYVLRTQS--- 57

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
               +  +     F+         E   ++  K +  D+ + 
Sbjct: 58  ---GEFIQFEDKDFYQDSDGNRKDEFKINVKEKGKVNDNTAK 96


>gi|91783264|ref|YP_558470.1| ATP-dependent endonuclease [Burkholderia xenovorans LB400]
 gi|91687218|gb|ABE30418.1| Predicted ATP-dependent endonuclease of the OLD family
           [Burkholderia xenovorans LB400]
          Length = 613

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 116/356 (32%), Gaps = 67/356 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           +++  + I  FRN+    +       +  G+N VGKTN+L A+  +   +     RR   
Sbjct: 1   MRLSRIVIKNFRNFKHFDVRLGEHAVVL-GENKVGKTNLLFALRLILDPALPDSSRRLRI 59

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV----VDELN 117
                     F+   AR    E + ++S++    ++       + D ++R          
Sbjct: 60  --------DDFWDGLARPLKAEDVIEVSVEFRDFENNENLLAVLADHLVRPDPMVARVTY 111

Query: 118 KHLRISWL-------VPSMDRIFSGLSMER------RRFLDRMVFAIDPRHRRRMIDFER 164
           ++  +  L             +F G  +E       RR++   +F         +  + R
Sbjct: 112 RYQPVQGLEGAPRSEADYEFILFGGGRIENAIGYELRRWMPMDLFPALRDAESDLARWSR 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
                              S +   +      ++        ALS++  E     +    
Sbjct: 172 -------------------SPLRPLLDRAAKTVDAK------ALSAIAGEVHATTSKIAA 206

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR---KMDSMSRRTLIGPHRSDLIVDYCDKA 281
              L+  +    DQ    + +++A K   G    + + + R          L +      
Sbjct: 207 LPELSDVVSQVNDQLTVMVGDKHAVKTALGFAPTEPERLLRA---------LQMMIDSGK 257

Query: 282 ITIAHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
             +A  S G   V+ + +  L H  L+         L ++E  AHL    +  ++R
Sbjct: 258 RGVAEASLGSANVLYLALKHLEHQYLVDEGERQHTFLAIEEPEAHLHPHLQRLIYR 313


>gi|28375551|emb|CAD66599.1| SMC protein [Geobacillus stearothermophilus]
          Length = 1187

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L++  F+++A  + + F    T  VG NG GK+NI +AI ++      +  R A 
Sbjct: 1   MFLKRLDVIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS S            ++  +G   +  +  +   R  R       IN    R
Sbjct: 61  MEDVIFAGSESRKPLNVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|83945335|ref|ZP_00957683.1| smc protein [Oceanicaulis alexandrii HTCC2633]
 gi|83851169|gb|EAP89026.1| smc protein [Oceanicaulis alexandrii HTCC2633]
          Length = 1145

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K   L ++ F+++     L  DA  T  +G NG GK+N+LEA+ ++   +  +  R   
Sbjct: 1   MKFTQLRLAGFKSFVDPTELRIDAGLTGIIGPNGCGKSNLLEALRWVMGATSAKSLRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGL-------ADISIKLETRDDRSVRCLQINDV 108
             DV   G+ S            V+  +          D+   +           +IN  
Sbjct: 61  MEDVIFAGTDSRPARNHAEVTLVVDNTDKRAPARFNDHDMLEVVRRITRGKGSDYKINGE 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + +     RRR L+
Sbjct: 121 EVRAKDVQLLFADAGTGANSPALVRQGQISELINAKPENRRRVLE 165


>gi|58262882|ref|XP_568851.1| cohesin complex subunit psm1 [Cryptococcus neoformans var.
          neoformans JEC21]
 gi|57223501|gb|AAW41544.1| cohesin complex subunit psm1, putative [Cryptococcus neoformans
          var. neoformans JEC21]
          Length = 1202

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRG--FRRAS 60
          + ++ L +  F++Y     + F        +G NG GK+N+++AISF+   +    R   
Sbjct: 1  MPLQRLELYNFKSYREKQVISFGDVPFVSIIGPNGAGKSNLMDAISFVLGVKSAQLRSTQ 60

Query: 61 YADVTRIG 68
            D+   G
Sbjct: 61 LKDLIYRG 68


>gi|74179914|dbj|BAE36517.1| unnamed protein product [Mus musculus]
          Length = 173

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 18/123 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + +K + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVI 110
           V  
Sbjct: 120 VNA 122


>gi|45382553|ref|NP_990561.1| structural maintenance of chromosomes protein 2 [Gallus gallus]
 gi|2500794|sp|Q90988|SMC2_CHICK RecName: Full=Structural maintenance of chromosomes protein 2;
           Short=SMC protein 2; Short=SMC-2; AltName:
           Full=Chromosome scaffold protein ScII
 gi|572692|emb|CAA56767.1| chicken SCII [Gallus gallus]
          Length = 1189

 Score = 58.0 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/270 (20%), Positives = 98/270 (36%), Gaps = 34/270 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MYIKSIVLEGFKSYAQRTEIRDFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+  + G          +            G E   +I+I  +       + L IN 
Sbjct: 61  SLQDLVYKNGQAGVNKATVSITFDNSDKKNSPLGFENNDEITITRQVIVGGRNKYL-ING 119

Query: 108 VVIR--VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMID 161
           +      V +L   + ++   P    I  G      + L+     ++  I+     RM +
Sbjct: 120 MNASNNRVQDLFGSVGLNVNNP-HFLIMQGQIT---KVLNMKPTEILAMIEEAAGTRMYE 175

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
            +++   +     E   D      I  +++    K+  AR   +           + EN 
Sbjct: 176 CKKITAHKTIEKKESKLDEIR-RIITEEISPTLEKLKEARASYLE----YQKMTREVENL 230

Query: 222 PHIKLSLTGFLDGKF-DQSFCALKEEYAKK 250
             I ++       +  D+S  ALKE  A K
Sbjct: 231 RRIYVAFQYVRAEEIKDRSTNALKEAQANK 260


>gi|115403001|ref|XP_001217577.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114189423|gb|EAU31123.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 604

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 80/282 (28%), Gaps = 43/282 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +    +         VG NG GK+ +L AI+    G+     R  S  +
Sbjct: 102 LERVECYNFMCHDHFHVELGPLINFIVGKNGSGKSAVLTAITLCLGGKASATNRGQSLKN 161

Query: 64  VTRIGSPSFFSTFARVEGMEG---------LADISIKLETRDDRSVRCLQIND----VVI 110
             + G  S           EG            +            +    N        
Sbjct: 162 FIKEGKESATIVVRIKNQGEGAFMPDDYGKSIIVERHFSKNGTSGFKIKAENGRIMSTKK 221

Query: 111 RVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRMI 160
             +D +  H  + +  P        +   + S    E+ +F      +  +D  +     
Sbjct: 222 AELDAIIDHFTLQFDNPMNVLSQDMARQFLSSSSPAEKYKFFVKGVQLEQLDQDY----- 276

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI------ME 214
              RL+      + E          I  ++++   +    R E   +L   +      M 
Sbjct: 277 ---RLIEESADQIEEKLRSREQDVKILKRLSDAAQEKLE-RSEQHQSLRDRVRNVRNQMA 332

Query: 215 YVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDG 254
           + Q E     + +L   L    D   +  A  E +   L + 
Sbjct: 333 WAQVEEQERERDALDEELAKADDGIANAEAGVERFDDALREA 374


>gi|319411599|emb|CBQ73643.1| probable SMC1-chromosome segregation protein [Sporisorium
          reilianum]
          Length = 1243

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          + +K L I  F++Y     +         +G NG GK+N+++AISF+   R    R +  
Sbjct: 1  MPLKRLEIENFKSYRGHQVVGPFNAFAAVIGPNGSGKSNLMDAISFVLGVRSAQLRSSQL 60

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 61 KDLIFRG 67


>gi|261403240|ref|YP_003247464.1| SMC domain protein [Methanocaldococcus vulcanius M7]
 gi|261370233|gb|ACX72982.1| SMC domain protein [Methanocaldococcus vulcanius M7]
          Length = 1001

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 97/268 (36%), Gaps = 25/268 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYA 62
           + IK + ++ F+++A+ ++ FD      +G+NG GK++I EA+ F   G    F    Y 
Sbjct: 1   MIIKEIKMNNFKSHANSKITFDKGIVAIIGENGSGKSSIFEAVFFALFGVDSNF---KYE 57

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++      S       ++         I  E  +    +  +   +    +  +NK +  
Sbjct: 58  NIISKNRKS---VRVELDFEVRGDYYKIIREYDNGGKAKLYKNGKLYASSISAVNKTVSE 114

Query: 123 SW-----LVPSMDRIFSGL--------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                  L  +   I  G           ER   + +++   +    +       +++  
Sbjct: 115 VLGIDKNLFLNSIYIKQGEIAKFLMLKPAERMETIAKLLGIDE--FEKCYQKMGEILKEY 172

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
              L     + S   S E ++ ++  K+     + ++ ++  I +  ++      +LS  
Sbjct: 173 KSKLERLEGELSNKKSFEQELRDMEKKLQEK-TDELSKINETIKKMKEELKDAEDELSNI 231

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKM 257
                ++++    L+E     L   ++ 
Sbjct: 232 EKKKLQYEKFISKLEER-KTALELNKQK 258



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI---VTDIGSQ 344
           S GEQ  V + + LA A  +         ++LDE +  LDE++R  L  I   V  I   
Sbjct: 913 SGGEQIAVALSLRLAIANAL--IGNRIECIILDEPTVFLDENRRAKLAEIFKKVKSIPQM 970

Query: 345 IFMT 348
           I +T
Sbjct: 971 IIIT 974


>gi|126654292|ref|ZP_01726069.1| Smc [Bacillus sp. B14905]
 gi|126589256|gb|EAZ83417.1| Smc [Bacillus sp. B14905]
          Length = 1191

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 98/281 (34%), Gaps = 41/281 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++   + + F    T  VG NG GK+N+ +AI ++      +  R + 
Sbjct: 1   MFLKRLEVIGFKSFAERIGIDFVPGVTAVVGPNGSGKSNVTDAIRWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS S     F      ++  +     S    +   R  R       +N+   R
Sbjct: 61  MEDVIFAGSDSRKPLNFAEVTLILDNTDEQLAFSYTEVSVTRRVYRSGDSEYLLNNQQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I +    +RR   +             ++ ++
Sbjct: 121 LKDITDLFMDSGLGKEAFSIISQGRVDEILNSRPDDRRSIFEE---------AAGVLKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
             +R +         D +    ++  + EL       R+  +   +S   +YVQ      
Sbjct: 172 --IRKKKAEHKLVETDENLYRVLDI-LHELDS-----RLGPLEMQASSARDYVQMSTELK 223

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEY--AKKLFDGRKMDSMS 261
              +++         QS  ALKEEY    ++   +  D  +
Sbjct: 224 DFDIAILVHDFKNCAQSLRALKEEYTNLSEIEQKQAQDIAT 264


>gi|121533609|ref|ZP_01665436.1| ATPase involved in DNA repair-like [Thermosinus carboxydivorans
           Nor1]
 gi|121307600|gb|EAX48515.1| ATPase involved in DNA repair-like [Thermosinus carboxydivorans
           Nor1]
          Length = 819

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 77/256 (30%), Gaps = 30/256 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62
           + I+ + +  FRN A + L      T+    N  GKT++ +A+     G   R A+    
Sbjct: 1   MLIEQIAVKNFRNLADVNLTLQPGITLIKAKNEGGKTSLRKAVEIALFGDP-RSAAAKVY 59

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD-----RSVRCLQINDVVIRVVDELN 117
                G  S +              +    E R          + L     +   + E+ 
Sbjct: 60  QHQTWGQNSLYEIRLDFSADGKRYRLVRDFEARTSVLENLADGKKLTDKKRIEEKLAEIL 119

Query: 118 KH------LRISWLVPSMDRIFSGLSMERRRFLDRM-------VFAIDPRHRRRMIDFER 164
                   L   +               R+R  +++       V  +       + +  +
Sbjct: 120 GLPTATLFLNTVYFSAEEMIQLKNAEELRKRLEEKLSGLDGVVVSKLLKDIDDHLSELTK 179

Query: 165 LMR--GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
            ++   +N        D     +++A++ E+   +  A  +          E  Q     
Sbjct: 180 GLKGTAKNPGPIRRLTDK--LDALQAELREMEETVRQAAAKYAE-----YYETSQAIATL 232

Query: 223 HIKLSLTGFLDGKFDQ 238
             +L++    + K+ Q
Sbjct: 233 KEQLAIKETENEKYVQ 248



 Score = 40.7 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 15/174 (8%)

Query: 191 AELGVKINIAR--VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ----SFCALK 244
           A+L   +   R  +E I      I    ++      ++ +   L   F +    +   + 
Sbjct: 636 AKLEAYLATVRYGIEDIETKREEIETCQEQLRALQEEVQVLSILKEWFSEARNNTVAKIT 695

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRS-DLIVDYCDKAITIAHGS---TGEQKVVLVGIF 300
            +    L       +  R   +G       +V   DK   +  GS   TG +  +     
Sbjct: 696 SDIGDALLRYFNTLTEGRYNQVGLSPDLSPMVFSADKGDHVDIGSELSTGTRDQLYFATR 755

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRN---ALFRIVTDIGSQIFMTGTD 351
           LA    IS   G  P LLLD+   H D D+R    AL + +      +  T  D
Sbjct: 756 LALIPAISQ--GKKPPLLLDDPFVHFDPDRRAKAFALLKELAKDHQILLFTCGD 807


>gi|20978622|sp|Q96YR5|RAD50_SULTO RecName: Full=DNA double-strand break repair rad50 ATPase
          Length = 879

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-D 63
          + I+ ++I  F ++    + F     + +G NG GK++I++AISF    +  R A    D
Sbjct: 1  MIIRRIDIENFLSHDRSLIEFKGTVNVIIGHNGAGKSSIIDAISFSLFRKSLRDAKKQED 60

Query: 64 VTRIGSPSFFST 75
          + + G+     T
Sbjct: 61 LIKRGAGRATVT 72



 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 109/284 (38%), Gaps = 39/284 (13%)

Query: 78  RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
            ++G E        L  + + + + ++ N+  I+    L   L++    P+  +      
Sbjct: 609 EIKGKENKLRELDTLLAKIETAKQKIKQNEEEIKK---LTDELQLLNFDPNRFQQIKRE- 664

Query: 138 MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +  L++++  I+ +    +   + ++    + L E   D       + ++     K+
Sbjct: 665 ---KEVLEKILGEINSKKGELLGK-KEVLENDIKRLEEQIKDYEEKLKNKQKLITAYDKL 720

Query: 198 NIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
              R  +    L + +M  V+      ++ SL   L  +F+ SF  ++ ++  K      
Sbjct: 721 KKLREHLAEDKLQAYLMNTVKSL----VEDSLNSILS-RFELSFTRVEVDFNDK------ 769

Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
            + +   T  G              + +   S GE+  + + + LA A+ + N  G    
Sbjct: 770 -NGIYAYTTSGQ------------RLPVNLLSGGERVSIALALRLAIAKSLMNEVG---F 813

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVFDS 357
           L+LDE + +LDE ++  L  I+        QI +   D+ +  +
Sbjct: 814 LILDEPTVNLDEYRKKELIDIIRSTVEVVPQIIVVTHDEELLQA 857


>gi|67922685|ref|ZP_00516189.1| similar to ATPases [Crocosphaera watsonii WH 8501]
 gi|67855467|gb|EAM50722.1| similar to ATPases [Crocosphaera watsonii WH 8501]
          Length = 387

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I+ L+I  +R +    +   AQ  + VGDN  GKT+ LEAI  L
Sbjct: 2  IRDLSIKNYRCFEDFYVDGLAQVNLIVGDNNSGKTSFLEAIYLL 45


>gi|302672055|ref|YP_003832015.1| hypothetical protein bpr_I2700 [Butyrivibrio proteoclasticus B316]
 gi|302396528|gb|ADL35433.1| hypothetical protein bpr_I2700 [Butyrivibrio proteoclasticus B316]
          Length = 374

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 56/147 (38%), Gaps = 17/147 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYAD 63
           IK + I++FR+   L +   +   + VGDN  GKT +LEAI  L   S     +      
Sbjct: 4   IKSIEINQFRSIKKLSVSGFSNINLIVGDNNSGKTTLLEAIQLLFAKSQLGSIKPVIDQR 63

Query: 64  VTRI-GSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCLQI--NDVVIR-----VVD 114
                   SF+ +F +     E    +   +     R    LQI  N+ VI       + 
Sbjct: 64  TVLSPDKSSFYVSFIKMFNAAESRDQLEFDISAESKRGFLRLQISGNEKVISGEEALQIS 123

Query: 115 ELNKHLRISW-----LVPSMDRIFSGL 136
            L+   +  +      +P   +IF G 
Sbjct: 124 SLSSRQKTQYKREAAFLPENAKIFIGS 150


>gi|121535547|ref|ZP_01667355.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1]
 gi|121305875|gb|EAX46809.1| conserved hypothetical protein [Thermosinus carboxydivorans Nor1]
          Length = 396

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/373 (15%), Positives = 110/373 (29%), Gaps = 76/373 (20%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-------RR 58
           +I+ L++  +R    LRL      T F+G NG GK+ +L+  +FL+            RR
Sbjct: 7   RIEELSVKNYRALKDLRLNGITPLTAFLGPNGSGKSTVLDVFAFLAECFSSGLRKAWDRR 66

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---------RCLQINDVV 109
             + ++   G+        +         I+  L   +                +     
Sbjct: 67  GRFKELRTRGASGPIVIELKYRENSQSPRITYHLAIDEGPRGPFVAEEWLQWRRKSKGKP 126

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            + +D  N    +      M   F   + E+    D +           +  F +    R
Sbjct: 127 FKFLDFKNGEGMVV--SGDMPDEFDHRTDEKLESADMLA-------VNTLGQFAK--HPR 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
              L                       I    +  + A         Q E  P  +LS+T
Sbjct: 176 VANLRR--------------------FITGWYLSYLTA----DNTRTQPEAGPQERLSVT 211

Query: 230 G--------FLDGKFDQSFCALKEEYAKKLFDGRKMD---SMSRRTLIGPHRSDLIVDYC 278
           G        +L  +       + +   K++    K+D       R L+     D      
Sbjct: 212 GDNLPNVIQYLKEQCPDRLQTILDILVKRVPRLEKVDSEIMADGRLLL--QIKDAPF--- 266

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           ++ I     S G  K++     L         T    ++ ++E   HL       L    
Sbjct: 267 ERPILARFASDGTLKMLAYLTIL-------YGTDLPQLVGIEEPENHLYPHLLRGLAEEC 319

Query: 339 TD--IGSQIFMTG 349
            +  + +QI +T 
Sbjct: 320 REASVSTQIMITT 332


>gi|110803965|ref|YP_699003.1| chromosome segregation protein SMC [Clostridium perfringens SM101]
 gi|110684466|gb|ABG87836.1| chromosome segregation protein SMC [Clostridium perfringens SM101]
          Length = 1185

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A    L F    T  VG NG GK+N+ +++   L     +  R A 
Sbjct: 1   MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       +      ++   G      + +K+  +  RS      IN+   R
Sbjct: 61  MEDVIFTGTEYRKPIGYAQVSLTLDNSSGELPLDYLEVKVTRKLFRSGESEYLINNSPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +N  +                +D I SG   +RR  L+
Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162


>gi|67476422|ref|XP_653814.1| structural maintenance of chromosomes protein [Entamoeba
           histolytica HM-1:IMSS]
 gi|56470807|gb|EAL48428.1| structural maintenance of chromosomes protein [Entamoeba
           histolytica HM-1:IMSS]
          Length = 1023

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 49/131 (37%), Gaps = 13/131 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63
           I+ +++  F  +  L+L   +Q    VG+NG GK+ IL A++     +  F  R    +D
Sbjct: 9   IERIDLENFMCHRHLQLDLCSQVNFIVGENGSGKSAILVALAICFGAKATFTNRGKRVSD 68

Query: 64  VTRIGSPSFFSTFARVEGMEGLAD---------ISIKLETRDDRSVRCLQIN-DVVIRVV 113
           + + G      +       EG  D         I  K+      S +   +N     RVV
Sbjct: 69  IVKNGETHCKVSVYLRNRGEGAMDKEKYGDTIIIERKISKDGGSSYKIYSMNSGEKPRVV 128

Query: 114 DELNKHLRISW 124
              +  +    
Sbjct: 129 GHKSSDVNEIL 139


>gi|330816398|ref|YP_004360103.1| ATP binding protein [Burkholderia gladioli BSR3]
 gi|327368791|gb|AEA60147.1| ATP binding protein [Burkholderia gladioli BSR3]
          Length = 465

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 29/43 (67%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          I+ L++  +R + ++ + FD + T+ +  NG GKT+IL+A++ 
Sbjct: 6  IRRLSLKGYRCFDAIDIDFDERLTVLIASNGAGKTSILDALAV 48


>gi|284164623|ref|YP_003402902.1| chromosome segregation protein SMC [Haloterrigena turkmenica DSM
           5511]
 gi|284014278|gb|ADB60229.1| chromosome segregation protein SMC [Haloterrigena turkmenica DSM
           5511]
          Length = 1196

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 102/309 (33%), Gaps = 71/309 (22%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK L +  F+++    ++ F    T+  G NG GK+NI++A+ F   L+  RG R   
Sbjct: 1   MYIKALVLDNFKSFGRKTKIPFYEDFTVITGPNGSGKSNIIDAVLFALGLARTRGIRAEK 60

Query: 61  YADVTRI-----GSPSFFSTFARVEGMEGLADISIKL----------------ETRDDRS 99
             D+        G  S     A VE +   +D ++                  E R  R 
Sbjct: 61  LTDLIYNPGHDDGDSSGGPREATVEVILDNSDGTLTRSQVVNAAGSEDVGDVDEIRIRRR 120

Query: 100 VRCL--------QINDVVIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRR 142
           V+           +ND  +  + ++   L  + + P          +  I +     RR 
Sbjct: 121 VKETEDNYYSYYYLNDRAVN-LSDIQDLLAQAGVTPEGYNVVMQGDVTEIINMTPHARRE 179

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
            +D +    +                      +          +E ++ E  ++I   R 
Sbjct: 180 IIDEIAGVAEFD-------------------AKKEDAFEELEVVEERIDEAELRIEEKRD 220

Query: 203 EMINALSSLIMEYVQKENFPHIKLSLTGF---LDGKFDQSFCALKEEYAKKLF-----DG 254
             ++ L+    + ++       K    G+    + +  +   A  EE A +L        
Sbjct: 221 R-LDQLADERRQAMRYRRLRREKEEYEGYKKASELEEKRDELADAEETAAELEGELEDLQ 279

Query: 255 RKMDSMSRR 263
           R++D     
Sbjct: 280 RELDERQGT 288


>gi|229117671|ref|ZP_04247041.1| DNA repair protein recN [Bacillus cereus Rock1-3]
 gi|228665763|gb|EEL21235.1| DNA repair protein recN [Bacillus cereus Rock1-3]
          Length = 583

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 80/210 (38%), Gaps = 41/210 (19%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 61  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 115

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      +R+V  +D  ++   
Sbjct: 116 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGERIVKQLD-IYQTVY 171

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            D+E+L +    L       +     I+ Q
Sbjct: 172 ADYEKLKKQLKSLSENEQQMAHRLDLIQFQ 201


>gi|110667658|ref|YP_657469.1| chromosome segregation protein [Haloquadratum walsbyi DSM 16790]
 gi|109625405|emb|CAJ51829.1| DNA double-strand break repair rad50 ATPase [Haloquadratum walsbyi
           DSM 16790]
          Length = 898

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 5/100 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++   + +  F+ YA   L      TI  G NG GK+++LEA  F   G      +  D+
Sbjct: 1   MRFDHITLEHFKPYADASLDLQDGVTIIHGLNGSGKSSLLEACFFALYGARALDETLDDI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
                       A +E     A     ++ R  RS   +Q
Sbjct: 61  VTTDEDD-----ATIELTFSHAGSQYHIKRRLRRSGDRIQ 95


>gi|269986901|gb|EEZ93177.1| SMC domain protein [Candidatus Parvarchaeum acidiphilum ARMAN-4]
          Length = 382

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 51/143 (35%), Gaps = 13/143 (9%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62
           IK + +  F+++A  ++  F        G NG GK+N+++A+ F+  G      R     
Sbjct: 4   IKQVELDNFKSFAGHIKFDFVNGFNAIAGANGSGKSNLIDALLFVFGGSSKKEMRSDILT 63

Query: 63  DVTRIG-----SPSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQINDVVIRVV 113
           D+   G               ++       G+ +  + +  + D++ + +   +      
Sbjct: 64  DLIFNGGKNGRQAEHAKVNVILDNSKKEFHGIEENEVSISRKVDKNGKSVYRVNGKASTR 123

Query: 114 DELNKHLRISWLVPSMDRIFSGL 136
           +E+   L +         I    
Sbjct: 124 EEVLNVLSLVKFRQDGFNIIPQG 146


>gi|261419392|ref|YP_003253074.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC61]
 gi|319766207|ref|YP_004131708.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC52]
 gi|261375849|gb|ACX78592.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC61]
 gi|317111073|gb|ADU93565.1| chromosome segregation protein SMC [Geobacillus sp. Y412MC52]
          Length = 1187

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L++  F+++A  + + F    T  VG NG GK+NI +AI ++      +  R A 
Sbjct: 1   MFLKRLDVIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS S            ++  +G   +  +  +   R  R       IN    R
Sbjct: 61  MEDVIFAGSESRKPLNVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|206895293|ref|YP_002246874.1| probable DNA double-strand break repair Rad50 ATPase, putative
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737910|gb|ACI16988.1| probable DNA double-strand break repair Rad50 ATPase, putative
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 972

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 102/342 (29%), Gaps = 47/342 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFR------ 57
           +K K L ++ F    +L L F      +  G NG GK++ILEA+ F   G+  R      
Sbjct: 1   MKPKKLEVTNFLGLKNLSLEFPEQGVFVITGPNGSGKSSILEAMYFALYGKTMRLPGDVK 60

Query: 58  -RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
             A      +  S +          ++   +  ++ E       +    ++  +  +   
Sbjct: 61  NTAVINRNAQHSSDNPARAVVSFTFVQQGKEYLVRRELVRGVHKKDDVSHNAWLYDLSGH 120

Query: 117 NKHLR-------------ISWLVPSMD------------RIFSGLSMERRRFLDRM---- 147
              +              I  L P +              +      +RR+  D +    
Sbjct: 121 AGLVPETGVVKVNNKVEDILGLTPEVFAATVFLGQGKITELVEAKPDKRRKIFDAILETD 180

Query: 148 ----VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
               +  +     R +    + +  R  +L +G         +  Q  E  +K  I RV+
Sbjct: 181 HLVKMQELVRGDLRELQTKVKALLERKEILEQGPSAKDLEKEL--QDVEENMKQVIERVQ 238

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
           +    +  + E  + +      +  T             LKE   +        +  S+ 
Sbjct: 239 VFEQAAKELEEVQRIKG----DMENTEADIAALRSEIEKLKEAAERDTRIRLIKELRSKY 294

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             +   +  L     +K       S   +++  + + +    
Sbjct: 295 AELEQWQIQLEELTKNKDKLGKDLSNWSERINELKLRVVQIE 336


>gi|71983122|gb|AAZ57430.1| structural maintenance of chromosome 3 [Toxoplasma gondii]
          Length = 1491

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + IK + I  FR Y     + F   +   VG NG GK+N+L AI+F + G G + ++   
Sbjct: 1   MHIKEVTIRGFRTYRHSTTIHFSPGYNCIVGANGSGKSNVLLAIAF-ALGEGGQSSTERR 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
           +      +   +   V+ +    D  + +   D+  +R +
Sbjct: 60  MLLHEGMNERVSDGSVQVVLANEDRRLCMYDDDEVQIRRV 99


>gi|15669512|ref|NP_248322.1| purine NTPase [Methanocaldococcus jannaschii DSM 2661]
 gi|18202578|sp|Q58718|RAD50_METJA RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|1591962|gb|AAB99331.1| purine NTPase [Methanocaldococcus jannaschii DSM 2661]
          Length = 1005

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + ++ F+++ + R+ F+      +G+NG GK++I EA+ F   G G        +
Sbjct: 3   MILKEIRMNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGAGSNFNYDT-I 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
              G  S    +  ++      +  I  E    R    L  N   
Sbjct: 62  ITKGKKS---VYVELDFEVNGNNYKIIREYDSGRGGAKLYKNGKP 103



 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           ++ V   +  +TI + S GEQ  V + + LA A  +         ++LDE + +LDE++R
Sbjct: 900 EVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANAL--IGNRVECIILDEPTVYLDENRR 957

Query: 332 NALFRI---VTDIGSQIFMT 348
             L  I   V  I   I +T
Sbjct: 958 AKLAEIFRKVKSIPQMIIIT 977


>gi|15921404|ref|NP_377073.1| hypothetical protein ST1147 [Sulfolobus tokodaii str. 7]
 gi|15622190|dbj|BAB66182.1| 352aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 352

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 25/141 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----------- 55
           I+ L+I  F++  ++++    +  + VG NG GKT I+E++  +                
Sbjct: 2   IRELSIQNFKSLENVKIELG-KINVLVGPNGSGKTAIIESLLLIRNLVSKILGMSPFGLW 60

Query: 56  -------FRRASY---ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
                  F  +       V  I S  F+     V     + +I +  +   +RS   + I
Sbjct: 61  WGYDNVVF--SKDLGRNIVIEINSDEFYYLL-EVHRERFVKEILMMKDLNLERSEDKVII 117

Query: 106 NDVVIRVVDELNKHLRISWLV 126
           N+   + ++E    L +  L 
Sbjct: 118 NNEEYKGLNEEYSALNLVNLA 138


>gi|303231138|ref|ZP_07317878.1| chromosome segregation protein SMC [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514269|gb|EFL56271.1| chromosome segregation protein SMC [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 1184

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 75/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +  F+++A   +  F    T  +G NG GK+NI +A+ ++   S  R  R   
Sbjct: 1   MQLLRLELKGFKSFADKTVVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   G+      S        +  +G  D+ ++      R  R       IN    R
Sbjct: 61  AEDIIFSGTEKRKPMSAAEVTLVFDNADGQLDVDMQEVAITRRIYRTGESEFLINKRTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I +    ERR     ++F       R  I+ E
Sbjct: 121 LKDIHLLLADTGLGKDSMAIIGQNRIDAILNSKPEERR-----LIFEDVAGISRFKINKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
             +R                ++IE Q+  L  K
Sbjct: 176 DALRRIASTDRNMERVRDIMATIEEQLGPLAEK 208


>gi|239904715|ref|YP_002951453.1| DNA repair protein RecN [Desulfovibrio magneticus RS-1]
 gi|239794578|dbj|BAH73567.1| DNA repair protein RecN [Desulfovibrio magneticus RS-1]
          Length = 542

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 90/271 (33%), Gaps = 49/271 (18%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++IK L + +      L L F     +  G+ G GK+ I+ A++FL+  +      
Sbjct: 1   MIEVLRIKNLALID-----DLELEFGPGLNVLSGETGAGKSFIISAVNFLTGEKMH---- 51

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+ R G          V G E   ++ ++ E   D     + + D +           
Sbjct: 52  -TDLVRAGRDKAVVEALFVLGDE---ELILRRELVADTGRSRVYVGDALASRETLAALRP 107

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           ++   V    +        +   LD   F  DP           L+  +NRL  E     
Sbjct: 108 KLLLHVSQHGQGRLLQPAFQAALLD--GFLPDPA----------LLTEKNRLARE----- 150

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                    + E+   I       ++A ++ + E  Q   F H +++    L G+ D+  
Sbjct: 151 ---------LGEVAAAIRD-----LDAKAAGLEEKRQFLEFQHAEIAKVNPLPGEEDELV 196

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
                     L + RK      R L    R 
Sbjct: 197 AR-----KAALAESRKAAQALGRALECIERQ 222


>gi|255539797|ref|XP_002510963.1| Structural maintenance of chromosome, putative [Ricinus communis]
 gi|223550078|gb|EEF51565.1| Structural maintenance of chromosome, putative [Ricinus communis]
          Length = 1176

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 94/270 (34%), Gaps = 29/270 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA+  +   FD       G NG GK+N+L++I F   ++  +  R A
Sbjct: 1   MHIKEICLEGFKSYATRTVIQGFDPFFNAITGLNGSGKSNVLDSICFVLGITNLQQVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          +            G E  ++I++  +       + L IN 
Sbjct: 61  NLQELVYKQGQAGITKATVSIVFANSDRTRSPLGYEDHSEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
            + +     N    +   V +   +     +   + L+     ++  ++     RM + +
Sbjct: 120 KLAQPSQVQNLFHSVQLNVNNPHFLIMQGRIT--KVLNMKPPEILSMLEEAAGTRMYETK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           +    +     +   D      ++ ++     K+   R++ +           + +    
Sbjct: 178 KYAALKTLEKKQSKVDE-INKLLDQEILPALEKLRKERMQYMQ----WANGNAELDRLKR 232

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
             ++       K   +     E+   K+ +
Sbjct: 233 FCIAYEYVQAEKIRDTAVGEVEQIKAKISE 262


>gi|209522791|ref|ZP_03271349.1| SMC domain protein [Arthrospira maxima CS-328]
 gi|209496840|gb|EDZ97137.1| SMC domain protein [Arthrospira maxima CS-328]
          Length = 1044

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 8  KFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          + L +  F +Y    L F   HT    G NG GK+++LEAI++   G   R  +  D+ +
Sbjct: 22 QKLTLKNFLSYRDASLDFSGLHTACICGPNGAGKSSLLEAIAWSIWGHS-RAGTEDDLIQ 80

Query: 67 IGSPSFFSTFARV 79
          IG       F  +
Sbjct: 81 IGETQMRVDFIFI 93


>gi|188996121|ref|YP_001930372.1| chromosome segregation protein SMC [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931188|gb|ACD65818.1| chromosome segregation protein SMC [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 1172

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 13/120 (10%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           I  +N+  F++Y    L +      T  VG NG GK+NI ++I F    +  R  R    
Sbjct: 5   IDRINVYGFKSYGDRHLTIPLGPGFTAIVGPNGAGKSNIGDSIVFCLGIASARAMRALKL 64

Query: 62  ADVTRIGSPSFFSTFARVE------GMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
            D+    S    + +A VE      G   +    +++  + + S +   +IN   ++  +
Sbjct: 65  TDLI-FSSNDKSAPYAEVEIVFKNLGAFPINSEEVRISRKVELSGKSTYKINGKTVKQQE 123


>gi|169827095|ref|YP_001697253.1| chromosome partition protein smc [Lysinibacillus sphaericus C3-41]
 gi|168991583|gb|ACA39123.1| Chromosome partition protein smc [Lysinibacillus sphaericus C3-41]
          Length = 1191

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 98/281 (34%), Gaps = 41/281 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++   + + F    T  VG NG GK+N+ +AI ++      +  R + 
Sbjct: 1   MFLKRLEVIGFKSFAERIGIDFVPGVTAVVGPNGSGKSNVTDAIRWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS S     F      ++  +     S    +   R  R       +N+   R
Sbjct: 61  MEDVIFAGSDSRKPLNFAEVTLILDNTDEQLAFSYTEVSVTRRVYRSGDSEYLLNNQQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I +    +RR   +             ++ ++
Sbjct: 121 LKDITDLFMDSGLGKEAFSIISQGRVDEILNSRPDDRRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
             +R +         D +    ++  + EL       R+  +   +S   +YVQ      
Sbjct: 172 --IRKKKAEHKLVETDENLYRVLDI-LHELDS-----RLGPLEMQASSARDYVQMSTELK 223

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEY--AKKLFDGRKMDSMS 261
              +++         QS  ALKEEY    ++   +  D  +
Sbjct: 224 DFDIAILVHDFKNCAQSLRALKEEYTNLSEIEQKQAQDIAA 264


>gi|95928315|ref|ZP_01311063.1| SMC protein-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135586|gb|EAT17237.1| SMC protein-like [Desulfuromonas acetoxidans DSM 684]
          Length = 814

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++I  +++   +++    L F     +  G NGVGK+ + EAI +   G
Sbjct: 1  MQILSIHLKNIKSHRDTTLNFAPGINVLSGPNGVGKSTVFEAIGYALFG 49



 Score = 39.9 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 57/170 (33%), Gaps = 19/170 (11%)

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK-FDQSFC 241
              +  +M  L  +I     + + A+   I+    +      K  L  FL  + F++   
Sbjct: 619 LKGLAQEMTRLAAEI-----DALKAIEQEIIAKQAQIKAYGEKEELVKFLRNRVFNKVSA 673

Query: 242 ALKEEYAKKL--FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI------TIAHGSTGEQK 293
           +L E + +++     +    ++          +  +   D A            S G+  
Sbjct: 674 SLSERFREEISQRANQIYRIIAEVDEELAWGDNYQIVLRDMADGELRERADDQLSGGQTM 733

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
             +V + LA  + I        I   DE +++LD  +R  L      I  
Sbjct: 734 SAVVALRLAMLQTIGAR-----IAFFDEPTSNLDAARRENLAHAFRAIDV 778


>gi|323479028|gb|ADX78467.1| chromosome partition protein SMC [Enterococcus faecalis 62]
          Length = 308

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208


>gi|302918377|ref|XP_003052644.1| hypothetical protein NECHADRAFT_35358 [Nectria haematococca mpVI
           77-13-4]
 gi|256733584|gb|EEU46931.1| hypothetical protein NECHADRAFT_35358 [Nectria haematococca mpVI
           77-13-4]
          Length = 1092

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 76/219 (34%), Gaps = 16/219 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
            I  +++  F  Y     +      + VG NG GK++++ AI  L  G       R  S 
Sbjct: 75  AIVRVSVENFVTYEKAEFLPGPHLNMVVGPNGTGKSSLVCAIC-LGLGYSPKHLGRAGSV 133

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119
            +  + G  +        +  +   +  IK++ R +++ +   +N      + V  L + 
Sbjct: 134 KEFVKHGKDTATIEIELQKRPKDRRNYVIKVQIRREQNTQKWWMNGKETNHKTVQTLMRK 193

Query: 120 LRISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI-DFERLMRGRNRLL 173
           L+I        +P   R+    +      L   + A  P          + L + +  L 
Sbjct: 194 LKIQVDNLCQFLPQD-RVVEFAACTPVDLLHETLRAAAPEEMLDWQKQLQDLHKDKKELA 252

Query: 174 TEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSS 210
                D+    ++E   Q  +  V     R E+   + +
Sbjct: 253 EAVSTDTETLKNLENRQQGLQADVDRIREREEIQEQIKN 291


>gi|194016711|ref|ZP_03055324.1| DNA repair protein RecN [Bacillus pumilus ATCC 7061]
 gi|194011317|gb|EDW20886.1| DNA repair protein RecN [Bacillus pumilus ATCC 7061]
          Length = 578

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 81/256 (31%), Gaps = 37/256 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L + F+   T+  G+ G GK+ +++A+S L  GRG      ++  R
Sbjct: 2   LAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRG-----SSEFVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G                          G++   ++ I     ++      +IN  ++  
Sbjct: 57  YGEKKAELEGLFLVPAADHPVFALCEEHGIDATDEMMILRRDMNNNGKSICRINGKLV-T 115

Query: 113 VDELNKHLRISW-LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
           +  L +  R+   +    D             LD+            +  ++        
Sbjct: 116 ISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAE---EIAPALSQYQEAYEQ--- 169

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
             T+        S  E +M          R++++       +E  Q E     KL     
Sbjct: 170 -YTKTAQKLKQLSENEQEMV--------HRLDLLQ-FQLEEIEAAQLEPGEDEKLQEERH 219

Query: 232 LDGKFDQSFCALKEEY 247
               +++ F +L+  Y
Sbjct: 220 QISNYEKIFSSLQNAY 235


>gi|4587293|dbj|BAA76704.1| RecN [Deinococcus radiodurans]
          Length = 546

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 88/284 (30%), Gaps = 38/284 (13%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L I        L L        F G+ G GK+ I++A+  L  GR     +  D+ 
Sbjct: 15  RLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGR-----ANHDLI 69

Query: 66  RIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVR-------CLQINDVVIRVVDELN 117
           R G      T    +G E  AD  S +L +    + R         ++ +     +    
Sbjct: 70  RSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHW 129

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL----- 172
           +H  +S L P+  R      + +         A       R+   +   R R R      
Sbjct: 130 QHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQRERARQIDLLA 189

Query: 173 -----LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                ++E   D      +  +++ L        +  I   ++  +E +   +     L 
Sbjct: 190 FQVQEISEVSPDPGEEEGLNTELSRLSN------LHTIAQAAAGGVELLSDGDLNAAGLI 243

Query: 228 LTGFL----DGKFDQSFCALKEEYAKKLF-----DGRKMDSMSR 262
                      K+D++   L+ E    L       G   D    
Sbjct: 244 GEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEG 287


>gi|325300494|ref|YP_004260411.1| SMC domain-containing protein [Bacteroides salanitronis DSM
          18170]
 gi|324320047|gb|ADY37938.1| SMC domain protein [Bacteroides salanitronis DSM 18170]
          Length = 441

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF----------LSPGR 54
          ++IK + I  FR +     +FD++  + +G+N  GKT +L A+            L  G 
Sbjct: 1  MRIKDITIRNFRGFTERSFIFDSRMNVVLGNNTTGKTTLLHAVQIALGAFLQELTLVTGC 60

Query: 55 GFRRASYADVTR 66
            R    +DV R
Sbjct: 61 A-RNTKDSDVVR 71


>gi|312127774|ref|YP_003992648.1| chromosome segregation protein smc [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777793|gb|ADQ07279.1| chromosome segregation protein SMC [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1177

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 110/311 (35%), Gaps = 37/311 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + IK+L I  F+++    R+ F    T  VG NG GK+NI +AI +    +     R A 
Sbjct: 1   MYIKWLEIYGFKSFCEKTRIEFQKGITAIVGPNGCGKSNITDAIRWALGEQSLKILRAAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+       F       +   G+  I    + +  R  RS      IN +  R
Sbjct: 61  QEDLIFAGTEKRKSQGFAEVSICFDNSSGVLPIDYQEVVITRRLFRSGESEFFINKIPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I +   +ER R  +        ++R+   + E
Sbjct: 121 LKDVYELFLDSGLGKDGYSIISQGRVDEIINARPVERYRIFEEACGITKYKYRKE--ETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R ++                  ++  M EL  ++   + + +    + +    + ++   
Sbjct: 179 RKLK----------ATEENIQRLQDVMFELRTQLEEIKPD-VQKAKTYLQINQKLQSLKK 227

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            K      L G+    F   +++  ++L     +    + +    +++ L +D   + + 
Sbjct: 228 EKYVYEYNLTGRRYHDFLIKEKQLNEELEKLIHLRRELKES---INQNKLQMDLLTQEVE 284

Query: 284 IAHGSTGEQKV 294
               S  E K 
Sbjct: 285 KTRLSYDEIKS 295



 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 44/224 (19%)

Query: 157  RRMIDFERLMRGR------------NRLLTEGYFDSSWCSSIEAQMAELGV--------- 195
              + ++ + ++ +            NR +              A ++ELG          
Sbjct: 930  HDLENYMKNIKEKYFETFNEEINTSNREVFWSKEKEDELERCTAALSELGEVKLYSIDQE 989

Query: 196  KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
            K    R++ +      + +   +         L   L     + F    E+  K LF   
Sbjct: 990  KRLQERMQFLQKQIEDLQKTTDELK------RLISHLGKNMKEIFLENFEKI-KSLFSEI 1042

Query: 256  KMDSMSRRT----LIGPHRS---DLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAHARLI 307
             ++     +    LIG       D+ V    K +  I   S GE+ +V + +  A     
Sbjct: 1043 FIELFGGGSCDLKLIGQDGELGVDIDVKPPGKKLQNINLLSGGEKALVAIALLFAFL--- 1099

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMT 348
              T   + + +LDEI + LDE       + + ++ +Q   I +T
Sbjct: 1100 --TFKGSLLCILDEIDSSLDEANVQRFAQYIKNLNNQSQIIIVT 1141


>gi|291230578|ref|XP_002735243.1| PREDICTED: structural maintenance of chromosomes 1A-like
           [Saccoglossus kowalevskii]
          Length = 1251

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 86/268 (32%), Gaps = 44/268 (16%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K L +  F++Y     +      T  +G NG GK+N+++AISF+   +    R    +D
Sbjct: 4   LKLLEVENFKSYKGRQIIGPFKPFTAIIGPNGAGKSNLMDAISFVLGDKASNLRVKKLSD 63

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--------- 111
           +     +G P+    F      E   +   K       S    +IN  VI          
Sbjct: 64  LIHGAPVGKPAATRAFVTAVYAE-EDETEKKFTRTVIGSSTEFRINGKVISFAQYSSELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            +  L K         +++ I      ER +  + +                     R+ 
Sbjct: 123 KLGILVKARNFLVFQGAVESIAMKNPKERTQLFEEI--------------------SRSG 162

Query: 172 LLTEGY--FDSSWCSSIEA-QMAELGVK-INIARVEMINALSSLIMEYVQ--KENFPHIK 225
            L E Y    +    + E  Q      K I   R E    L     E  Q  KE+    +
Sbjct: 163 ELKESYESRKAEMLKAEEDTQFNYHKKKGIAAERKE--AKLEKDEAERYQKLKEDLSAAQ 220

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFD 253
           L L  F     +Q      EE   K  +
Sbjct: 221 LELQLFKLYHNEQDIDRYNEELKSKNKE 248


>gi|322375789|ref|ZP_08050300.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C300]
 gi|321279057|gb|EFX56099.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C300]
          Length = 899

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +KI+ + +  F+N+ +   + F    T  VG NG GKT I +AI     G
Sbjct: 1  MKIRKILLYNFKNFRNETVIDFSDGITFLVGPNGYGKTTIFDAIELGLTG 50


>gi|251781987|ref|YP_002996289.1| chromosome partition protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390616|dbj|BAH81075.1| chromosome partition protein [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 1181

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 105/287 (36%), Gaps = 45/287 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEMQGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++      ++  +     A   I++E    R+      I+   +R
Sbjct: 61  MPDVIFAGTENRSPLNYAQVAVVLDNSDHFIKEAKEVIRIERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +             ++ ++
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVK---------INIARVEM-INALS 209
              +     L +   +          ++ Q+  L  +         ++ +R ++ ++ L 
Sbjct: 172 TRKKETQSKLNQTQDNLDRLDDIIYELDNQLVPLEKQAKVAQKFLDLDASRKQLQLDILV 231

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           + I     K++     L         +  +  +++ +Y ++L   R+
Sbjct: 232 TDIALDQAKQSDDRAALESVKQDLSTYYANRQSMEADY-QQLKQKRQ 277


>gi|225619730|ref|YP_002720987.1| D repair and genetic recombination protein [Brachyspira
           hyodysenteriae WA1]
 gi|225214549|gb|ACN83283.1| D repair and genetic recombination protein [Brachyspira
           hyodysenteriae WA1]
          Length = 569

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 22/201 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYAD 63
           +K+L I  F     L++ F +   +  G+ G GK+ I+ A+  ++  +G      A+   
Sbjct: 2   LKYLEIRNFVLIDKLKINFSSGFNVLTGETGAGKSIIISALELITGEKGSTRMVGANGDR 61

Query: 64  VTRIGSPSFFSTFARVEGMEGLADIS-------IKLETRDDRSVRCLQIN-DVVIRVVDE 115
           +   G+ S  S+   V+      +I        IK E   D   +    N  V +  + E
Sbjct: 62  LIVSGNFSLQSSAYIVKNKLKEWNIEINNDELNIKREITKDGKSKSFINNVGVKVAELKE 121

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP--RHRRRMIDFERLMRG----- 168
           L   +           +F+        F D  +   D    ++       +L++      
Sbjct: 122 LGDLIVDIHGQHEHQSLFN--PANHLNFYDSYLNIDDKLENYKNHYNKLTKLIKQHNEIS 179

Query: 169 --RNRLLTEGYFDSSWCSSIE 187
             +N +L E  F       IE
Sbjct: 180 QNKNNILKEKSFLEYAIDEIE 200


>gi|195583502|ref|XP_002081556.1| GD25652 [Drosophila simulans]
 gi|194193565|gb|EDX07141.1| GD25652 [Drosophila simulans]
          Length = 1179

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 19/125 (15%)

Query: 5   IKIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRR 58
           + +K L +  F++Y     +   FD + T   G NG GK+NIL++I F   +S  +  R 
Sbjct: 1   MYVKKLVLDGFKSYGRRTEIEGEFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRA 60

Query: 59  ASYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIN 106
           ++  D+  + G          +           +G E   +IS+  +       + L IN
Sbjct: 61  SALQDLVYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVTRQVVVGGKNKFL-IN 119

Query: 107 DVVIR 111
             +++
Sbjct: 120 GKLVQ 124


>gi|238796705|ref|ZP_04640211.1| SMC domain protein [Yersinia mollaretii ATCC 43969]
 gi|238719436|gb|EEQ11246.1| SMC domain protein [Yersinia mollaretii ATCC 43969]
          Length = 572

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/379 (13%), Positives = 123/379 (32%), Gaps = 71/379 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR------R 58
           +KI ++ + ++RN+A   +   A++++ +G N VGKTN++ A+  L   +          
Sbjct: 1   MKIDYVYLHQYRNFAEAYINL-AKNSLVIGSNDVGKTNMIHALRLL-LDKSLSEADIEPT 58

Query: 59  ASYADVTRIG--SPSFFSTFARVEGMEGLADISIKLETRDDR----SVRCLQINDVVIRV 112
           A      + G  +  F    A  E  +      +K             R  + N      
Sbjct: 59  ARDFHCGQNGMQADYFMIRVAFSEVTQDAVLSQLKGFVSATGHFFLEFRATRANHSYEIA 118

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR-GRNR 171
                  + +    PS   +                  +  ++     D  R +R  +  
Sbjct: 119 AGYDLSAMEVI---PSRHYLK----------------HLHLKYIHSQRDLVRYIRSEKRH 159

Query: 172 LLT--EGYFDSSWCSSIEAQMAELGVKINI-----ARVEMINALSSLIMEYVQKENFPHI 224
           LL   +   D +   +   Q+  L   +         +  +   +  + + +Q  +  H+
Sbjct: 160 LLRLAQESRDDAQVDADAIQLQTLARLLESVNSGVKNLHYVAEATRDLNDELQALSHHHM 219

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
             +++       D     + E++ ++L              +G   +   V         
Sbjct: 220 GYNVS------LDTGAIGI-EQFIEQLE-------------LGASTNGSRVMLGGDGRNN 259

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGS 343
                     +L+ ++ A + L  +      I  ++E  AHL   ++  L   +++ +  
Sbjct: 260 Q---------ILLALWKAKSVLEHDQDSEVVIYCVEEPEAHLHPHQQRKLASYLISALPG 310

Query: 344 QIFMTGTDKSVFDSLNETA 362
           Q  +T     +  S +  +
Sbjct: 311 QTIVTTHSPQIAASYHPNS 329


>gi|298704768|emb|CBJ28364.1| SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) [Ectocarpus
           siliculosus]
          Length = 1544

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 17/126 (13%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + I+ + I  F++YA+  +   FD Q     G NG GK+NIL+AI F   +S     R +
Sbjct: 1   MHIREVVIDGFKSYATRTVLQGFDQQFNAITGLNGSGKSNILDAICFVLGISNLSQVRVS 60

Query: 60  SYADVTRIGSPSFFS------TFARVE------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++      +  +       F+ V+      G E   +++I  +       + L    
Sbjct: 61  NLQELVYKQGQAGVTKASVTLVFSNVDKKGSPMGYEEFDEVTITRQVVIGGKNKYLINGR 120

Query: 108 VVIRVV 113
            V +  
Sbjct: 121 TVQQSQ 126


>gi|167630241|ref|YP_001680740.1| chromosome partition protein smc, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592981|gb|ABZ84729.1| chromosome partition protein smc, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 1190

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 83/220 (37%), Gaps = 28/220 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + ++ F+++A    ++     T+ VG NG GK+N+ +AI ++      R  R + 
Sbjct: 1   MVLKRIELNGFKSFADKTEILLSPGLTVVVGPNGSGKSNVADAIRWVLGEQSPRSLRGSK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS              ++  +G+  +  +  T   R  R       +N    R
Sbjct: 61  MEDVIFAGSDRRKPVGMAEVSLTLDNEKGMLPVDYREVTVTRRVFRSGESDYLLNRSPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          +D + S    ERR  ++     +  R+R R  +  
Sbjct: 121 LRDLQELFSDTGLGREGISIIGQGRVDEVLSSRPEERRALIEEAAGIV--RYRNRKREAV 178

Query: 164 RLMRG-RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
           + +      L+  G         ++ Q+A +  +  +AR 
Sbjct: 179 KKLEETEQHLIRLG----DIIGELQQQLAAISSQAELARR 214



 Score = 39.5 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 61/165 (36%), Gaps = 14/165 (8%)

Query: 190  MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
            +A    +    R + ++     +M    K     +   + G +  +F Q+F  +   + +
Sbjct: 993  LAIEEEERLQERAQFLSRQHEDLMA--AKGTLEQVIAEIEGIMVRRFSQAFEEINSRFGE 1050

Query: 250  ---KLFDGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
                LF G + + +      L+      L      K + ++  S GE+ +  + +  A  
Sbjct: 1051 VFADLFQGGRAELVLTAPGDLLTTGVDILAQPPGKKLVNLSLLSGGERALTAIALLFALL 1110

Query: 305  RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
            +        +P  +LDEI A LDE       R +  +   SQ  +
Sbjct: 1111 QF-----RPSPFCVLDEIEAALDEANVARFGRYLQRLSEKSQFIV 1150


>gi|115376056|ref|ZP_01463302.1| RecF/RecN/SMC N terminal domain, putative [Stigmatella aurantiaca
           DW4/3-1]
 gi|310817715|ref|YP_003950073.1| RecF like family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366971|gb|EAU65960.1| RecF/RecN/SMC N terminal domain, putative [Stigmatella aurantiaca
           DW4/3-1]
 gi|309390787|gb|ADO68246.1| RecF like family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 368

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 127/386 (32%), Gaps = 72/386 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I+ +R+   + L      T+ VG NG GKTN+  A+  L              
Sbjct: 1   MTVTQLDIAGYRSVKRMVLPVHP-VTVVVGANGSGKTNLYRALHLL-------------- 45

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +     AR    EG     +    R+ +    +++    + + DEL   L    
Sbjct: 46  ----QAAAEGRLARTLAEEGGTPSVVWAGPREHKQPVRMKVG---VTLGDELAYELSC-- 96

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDP----RHRRRMIDFERLM----RGRNRLLTEG 176
                  I      ER       +F +DP     H   +    R +    + R   L + 
Sbjct: 97  ------GIVPKDPSER-----FSLFVLDPEVKEEHLWALSGGRRAVLMERKDRTAFLRDS 145

Query: 177 YFD----SSWCSSIEAQMAELGVKINIARVEMINA-LSSLIMEYVQKENF------PHIK 225
                   +   S E+ + +L       R+  I   LS+    +  + +       P I 
Sbjct: 146 EGKRVVFPTQLWSAESVLDQLAEPQRFPRLTEIQRTLSAWRFYHQFRTDLEAPARQPQIG 205

Query: 226 LSLTGFLDGKFD--QSFCALKEE-----YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
           +  T       D   +   ++E        + L D      +  +   G     L +   
Sbjct: 206 VRTTALAHDGRDLAAALATIREIGDRRGLERALEDAFPGAELEVKAPQGRFSLSLHLPGL 265

Query: 279 DKAITIAHGSTGEQK-VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
            + +  +  S G  + + L+   L+            P L L+E    L  D    L R+
Sbjct: 266 SRPMEASELSDGTLRYLCLLAALLS--------PRPPPFLALNEPETSLHPDLLGPLARL 317

Query: 338 V--TDIGSQIFMTGTDKSVFDSLNET 361
           V      SQI++T   +S+ ++++  
Sbjct: 318 VVAASKHSQIWITTHAESLAEAVSHR 343


>gi|218666509|ref|YP_002425241.1| chromosome segregation protein SMC [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|28374984|emb|CAD66591.1| SMC protein [Acidithiobacillus ferrooxidans]
 gi|218518722|gb|ACK79308.1| chromosome segregation protein SMC [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 1150

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 103/319 (32%), Gaps = 56/319 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + +  F+++  S R+ F+A   + +G NG GK+N ++A+ ++   S  R  R  +
Sbjct: 1   MRLSAIILQGFKSFRESTRIQFNANPVVIIGPNGCGKSNTVDAVRWVLGESSARQLRGGT 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLAD----------ISIKLETRDDRSVRC-LQINDV 108
            +DV   G  S   ++ A VE     +D            I +    DR      +IN  
Sbjct: 61  LSDVISNGGGSRPAASVATVELRFDNSDGAAPGAFAGAAEISVRRSLDRKGDGHYRINGA 120

Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLS------MERRRFL 144
             R  D                  E     RI    P   R     +       ERRR  
Sbjct: 121 RCRRRDVADLFLGTGLGGNAYAIVEQGTIGRIVDARPDDLRAILEEAGGISRYKERRRET 180

Query: 145 DRMVFAIDPRHRRRM--------IDFERLMRGR--NRLLTEGYFDSSWCSSIEAQMAELG 194
            + +      H +R+          ++RL R     + L     +          +A   
Sbjct: 181 TQRIAE-TREHLQRLYDIHGEMDGQWQRLQRQAESAQRLRALRVEERQWQWWS--LALRV 237

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHI---KLSLTGFLDGKFDQSFCALKEEYAKKL 251
             +   R + +   S L  EY ++E         L      D +  +   A + E     
Sbjct: 238 DALEAERRQSLEQRSRLQDEYRREERLLDAVTQSLDQLRAEDRRMQEDIAAAQGELYAVQ 297

Query: 252 FDGRKMDSMSRRTLIGPHR 270
                M+   R       R
Sbjct: 298 ARQSDMEHQLREQQAALQR 316



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              +  T+   S GE+ +  + +  A   L       AP  +LDE+ A LD+        +
Sbjct: 1037 GKRNATLQQLSGGEKALTAIALVFALFHL-----NPAPFCILDEVDAPLDDANVGRFCHL 1091

Query: 338  VTDIGSQI 345
            V  + +Q 
Sbjct: 1092 VQKMAAQT 1099


>gi|56419728|ref|YP_147046.1| chromosome segregation ATPase [Geobacillus kaustophilus HTA426]
 gi|56379570|dbj|BAD75478.1| chromosome segregation ATPase (SMC) [Geobacillus kaustophilus
           HTA426]
          Length = 1187

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L++  F+++A  + + F    T  VG NG GK+NI +AI ++      +  R A 
Sbjct: 1   MFLKRLDVIGFKSFADRVSIEFVPGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS S            ++  +G   +  +  +   R  R       IN    R
Sbjct: 61  MEDVIFAGSESRKPLNVAEVTITLDNEDGFLPLEYQEVSVTRRVYRSGESEFFINRQPCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|290968316|ref|ZP_06559858.1| DNA repair protein RecN [Megasphaera genomosp. type_1 str. 28L]
 gi|290781675|gb|EFD94261.1| DNA repair protein RecN [Megasphaera genomosp. type_1 str. 28L]
          Length = 568

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 90/270 (33%), Gaps = 25/270 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I  F     L + F    TIF G+ G GK+ +L+A+  L+  R     + A   R
Sbjct: 2   LQSLHIRHFALIEELHIHFGDGLTIFTGETGAGKSILLDAMGMLAGKR-----ASASFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLA-------------DISIKLETRDDRSVR-CLQINDVVIRV 112
            G+ SF    A     E                D  + +  +  R+ R    IN  ++ +
Sbjct: 57  QGTESFVVEGAFFFSNENEVLQQVLAANHIEAEDGQLVISRQFRRNGRGTTLINGTLVPL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM---VFAIDPRHRRRMIDFERLMRGR 169
                   ++  +    D      +      LD +   +      +      + R+++  
Sbjct: 117 TAVKQIGEQLLDIHGQYDNRLIFDAAYHVEILDSLTPALTEARRAYDLAYKTWARIVKEI 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP-HIKLSL 228
             L  E    +   S +E Q+ E+         +  + L   I      E+   +I+  L
Sbjct: 177 KTLQKEESEKARLLSVLEFQIKEIEAAQLREGED--DELEHHIKTAAHSEHIKNNIQDML 234

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
             F  G+  +      E   + L      D
Sbjct: 235 FAFEGGERQKGLLEQLETVQRVLLKTASYD 264


>gi|226355769|ref|YP_002785509.1| chromosome partition protein [Deinococcus deserti VCD115]
 gi|226317759|gb|ACO45755.1| putative chromosome partition protein [Deinococcus deserti VCD115]
          Length = 1096

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
           +  + +  F+++A   RL F    +  +G NG GK+N++EAI ++   +  R  R     
Sbjct: 2   LHSITLQGFKSFADRTRLEFGPGVSAVIGPNGSGKSNVVEAIRWVTHQARARELRAGRGT 61

Query: 63  DVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           ++   GS        A V+      +  + L  R  R     Q          ++   LR
Sbjct: 62  ELIFHGSGGKAPLGLAEVQLELSTPEGRVNLSRRIYRDGAAEQDLGGRPVRARDVQGALR 121

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR----HRRRMIDFERLMRGRNRLLTEGY 177
            + L P    +     +         V   + R    + +      R +  R        
Sbjct: 122 GTGLGPGGLAVIGQGEVS-------GVVQAEGRTLLGYVQEAAGLSRAVTARQETEARLR 174

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
              +    +          +   R   +  L        Q  +     L+L   L
Sbjct: 175 DADTALEQLRL--------VLNEREAAVVRLEKAAQAARQHRDLSARVLTLEDAL 221


>gi|319938734|ref|ZP_08013098.1| DNA repair protein RecN [Streptococcus anginosus 1_2_62CV]
 gi|319811784|gb|EFW08050.1| DNA repair protein RecN [Streptococcus anginosus 1_2_62CV]
          Length = 552

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 93/279 (33%), Gaps = 37/279 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IG-------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G                        +G++   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGASKAEIEGLFAIEQSKALVEIFEQQGLDMTEELIIRREIFQ-NGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+               F D   F +   +++    + +L +  
Sbjct: 116 VLRAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDDAFFKLKADYQQTFDQYRQLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINALS-----SLIMEY 215
             +      + +    +E Q+AE+            +N  R +++N        +     
Sbjct: 176 LTIQKNQEENKARIDMLEYQIAEIEAANLKAGEDLALNQERDKLLNHKQIADTLTNAYAM 235

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
           +  E F  +    +   D +  + + A  +E A  L + 
Sbjct: 236 LDDEEFSSLANVRSAMNDMEAIEDYDATYKEIATNLSES 274


>gi|299144131|ref|ZP_07037211.1| putative SMC family, C- domain protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518616|gb|EFI42355.1| putative SMC family, C- domain protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 1182

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEA-ISFLSPG--RGFRRAS 60
           + +K L I  F+++A   ++ F+ + T  VG NG GK+NI +A +  L     +  R + 
Sbjct: 1   MYLKTLYIQGFKSFAQKTKIEFNNKITGIVGPNGSGKSNISDAMMWVLGETSIKSLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ----INDVVIR 111
             DV   G+       F       +  +    I     +   R  R L+    IN+V  R
Sbjct: 61  MEDVIFSGTDEKKPLGFAEVTIVFDNSDKKLPIEYTEVSVTRRMYRSLESEFLINNVKCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|158521730|ref|YP_001529600.1| chromosome segregation protein SMC [Desulfococcus oleovorans Hxd3]
 gi|158510556|gb|ABW67523.1| chromosome segregation protein SMC [Desulfococcus oleovorans Hxd3]
          Length = 1204

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 60/166 (36%), Gaps = 26/166 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++K L I+ F+++     + F       VG NG GK+NI++A+ ++   +     R  S
Sbjct: 1   MRLKRLEINGFKSFPEKATISFPPGIFSIVGPNGCGKSNIIDALKWVMGEQSAMQLRGKS 60

Query: 61  YADVTRIGSPS-FFSTFARV------------EGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS        A V            E +  L +I I          R   +N 
Sbjct: 61  MDDVIFAGSNEKAPVNMAEVSLVLANDNGSAPEELRHLTEIMITRRLYRS-GEREYLLNK 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSG--------LSMERRRFLD 145
              R+ D  N  L       S   I  G           ERR F++
Sbjct: 120 QPCRLKDIYNIFLGSGMGARSYSIIQQGNIGAITDASPEERRMFIE 165


>gi|329770216|ref|ZP_08261606.1| chromosome segregation protein SMC [Gemella sanguinis M325]
 gi|328837022|gb|EGF86666.1| chromosome segregation protein SMC [Gemella sanguinis M325]
          Length = 1184

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 91/266 (34%), Gaps = 31/266 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +K+  + I+ F+++       F       VG NG GK+NI++AI   L     +  R +S
Sbjct: 1   MKLSKVEITGFKSFQKKTTFEFKNNLIGVVGPNGSGKSNIIDAIRWVLGEQSAKNLRGSS 60

Query: 61  YADVTRIGSPSFFS-TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             DV   G+       FA V      A+ S +++ R  R+       D     + ++   
Sbjct: 61  MKDVIFSGTEDVKRKNFAEVAVTFSNAEKSCEIKRRLYRNGDSEYFLDDKRAKLKDITNV 120

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
                +      I +            ++RR  ++             ++ ++   +  N
Sbjct: 121 YLDLGINKESYSIITQGKVEDIISSKPVDRRAIIEE---------ASGVLKYKNKKKETN 171

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
             L +   +      +    +E+       R E++    +   +Y+        K  L  
Sbjct: 172 AKLEKTNDN---LMRLNDIFSEISS-----RYEILEEQKNKTQKYLDYSRELEEKDILIN 223

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRK 256
             +    Q+  AL  +  K +   ++
Sbjct: 224 IYNISEYQNKLALLLDEKKVIQAEKE 249


>gi|325688245|gb|EGD30264.1| DNA repair protein RecN [Streptococcus sanguinis SK72]
          Length = 552

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD         +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLHLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|294679144|ref|YP_003579754.1| OLD family nuclease [Rhodobacter capsulatus SB 1003]
 gi|294477960|gb|ADE87347.1| nuclease, OLD family [Rhodobacter capsulatus SB 1003]
          Length = 594

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 67/358 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           ++I  + I+ F N++ L +       + VG+N VGK+N + A+   L PG   R      
Sbjct: 1   MRISRVRIANFANFSDLDVETGESI-VIVGENKVGKSNFIRALQLILDPGLSER---DRQ 56

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           +   G   F+      + +    +ISI L   T D R                 L  HL 
Sbjct: 57  L---GLEHFWDGLGE-DKLGEAIEISIDLTDFTNDPR-----------------LMAHLN 95

Query: 122 ISWLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
              + P       G  M  R   RF  +     DP     + D+E ++         G  
Sbjct: 96  DCVVDP-------GPPMVARLTYRFQPKANLGRDP---ESLADYEYVI--------FGGD 137

Query: 179 DSSW--------CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSL 228
           D              ++ Q+A    +  ++I R   +  L   +   + ++    I+  +
Sbjct: 138 DPDMAIGSSLRRMLPLDVQVALRDAEKDLSIWRNSPLRPLIEQLATSLDEDARDEIQEQV 197

Query: 229 -TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL-IGPHRSD-----LIVDYCDKA 281
                +        A  +  + +L            TL + P R D     L +   + A
Sbjct: 198 NEAQAELAGHAEVVATAQRISDRLIAIAGEQHAVPLTLGLAPTRVDALLRSLRLLIDNGA 257

Query: 282 ITIAHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            +I   S G   ++ + +  L   RL+++        +++E  AHL    +  ++R  
Sbjct: 258 RSIGDASLGTANLIFLALKSLELDRLVTDGERDHTFFVVEEPEAHLHPHVQRLVYRYF 315


>gi|227550769|ref|ZP_03980818.1| chromosome segregation protein Smc [Enterococcus faecium TX1330]
 gi|227180087|gb|EEI61059.1| chromosome segregation protein Smc [Enterococcus faecium TX1330]
          Length = 1191

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 100/285 (35%), Gaps = 38/285 (13%)

Query: 8   KFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYAD 63
           K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R     D
Sbjct: 2   KRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGKMPD 61

Query: 64  VTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDELNKH 119
           +   GS +      A V  +   +D  + LE  +    R  +        I       K 
Sbjct: 62  IIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCRLKD 121

Query: 120 LRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
           ++  +L   +             + IFS    +RR   +     +   +++R    E+ +
Sbjct: 122 IQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAEQKL 179

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLIMEY 215
                 L+           +E Q+  L  + + A  E +             + + I   
Sbjct: 180 FETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLQLKETLTQTDVSLMVAEIKTA 235

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
            +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 236 KKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 280


>gi|50307571|ref|XP_453765.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642899|emb|CAH00861.1| KLLA0D16005p [Kluyveromyces lactis]
          Length = 1170

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D Q     G NG GK+NIL+AI F+         R  
Sbjct: 1   MKVEELIIDGFKSYATRTVITDWDPQFNAITGLNGSGKSNILDAICFVLGISSMATVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A ISI  +       + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFNNSDTSNSPIGFESHAKISITRQIILGGVSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    L     +   + + + +    
Sbjct: 120 HRAQQQTVLQLFQSVQLNINNPNFLIMQG 148


>gi|1237015|dbj|BAA10977.1| ORF4 [Bacillus subtilis]
          Length = 1188

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS 60
          + +K L++  F+++   + + F    T  VG NG GK+NI +AI ++  G   R  R   
Sbjct: 1  MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGGQSARSLRGGK 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFAGSDS 71


>gi|308173557|ref|YP_003920262.1| chromosome condensation and segregation SMC ATPase [Bacillus
           amyloliquefaciens DSM 7]
 gi|307606421|emb|CBI42792.1| chromosome condensation and segregation SMC ATPase [Bacillus
           amyloliquefaciens DSM 7]
          Length = 1186

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 91/269 (33%), Gaps = 35/269 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L++  F+++   + + F    T  VG NG GK+NI EAI   L     R  R   
Sbjct: 1   MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITEAIRWVLGEQSARSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRV 112
             D+   GS S            ++  +    I    + +  R  RS     + +     
Sbjct: 61  MEDIIFAGSDSRKRLNLAEVTLTLDNEDHFLPIDYHEVSVTRRVYRSGESEFLINNQQCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L   +  I S           + +RR   +             +    
Sbjct: 121 LKDIIDLFMDSGLGKEVFSIISQGKVEEILSSKAEDRRSIFEEA--------AGVLKYKT 172

Query: 164 RLMRGRNRLLT---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           R  +  N+L                +E Q+  L ++ +IA  + +     L    +    
Sbjct: 173 RKKKAENKLFETQDNLNRVEDILHELEDQVEPLKIQASIA-KDYLEKKKELEHVEIALTA 231

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           F   +L   G   G  ++   A +EE A+
Sbjct: 232 FDIEELH--GRWSGLKEKVQAAKEEELAE 258


>gi|312793350|ref|YP_004026273.1| chromosome segregation protein smc [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180490|gb|ADQ40660.1| chromosome segregation protein SMC [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1177

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 104/307 (33%), Gaps = 41/307 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + IK+L I  F+++    R+ F    T  VG NG GK+NI +AI +    +     R A 
Sbjct: 1   MYIKWLEIYGFKSFCEKTRIEFQKGITAIVGPNGCGKSNITDAIRWALGEQSLKILRAAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+       F       +   G+  I    + +  R  RS      IN +  R
Sbjct: 61  QEDLIFAGTEKRKSQGFAEVSICFDNSSGVLPIDYQEVVITRRLFRSGESEFFINKIPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I +   +ER R  +        ++R+   + E
Sbjct: 121 LKDVYELFLDSGLGKDGYSIISQGRVDEIINARPVERYRIFEEACGITKYKYRKE--ETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R ++                  +  Q+ E+   +  A         + +    + ++   
Sbjct: 179 RKLK---ATEENIQRLQDVIFELSTQLEEIKPDVQKA--------KTYLQINQKLQSLKK 227

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
            K      L GK    F   +++  ++L      + +          +++ L +D   + 
Sbjct: 228 EKYVYEYNLTGKSYHDFLTKEKQLNEELEKLIHLRRELEE-----SINQNKLQMDLLIQQ 282

Query: 282 ITIAHGS 288
           +     S
Sbjct: 283 VEKTRLS 289



 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 35/171 (20%)

Query: 195  VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
             K    R++ +      + +    +    +   L   +   F ++F  +K  +++  F+ 
Sbjct: 989  EKRLQERMQFLQKQIEDLQKTT--DELKRLISHLEKNMKEIFLENFEKIKSLFSEIFFE- 1045

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAI--------------TIAHGSTGEQKVVLVGIF 300
                      L G    DL +   D  +               I   S GE+ +V + + 
Sbjct: 1046 ----------LFGGGSCDLKLIGQDGELGVDIDVKPPGKKLQNINLLSGGEKALVAIALL 1095

Query: 301  LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMT 348
             A       T   + + +LDEI + LDE       + + ++ +Q   I +T
Sbjct: 1096 FAFL-----TFKGSLLCILDEIDSSLDEANVQRFAQYIKNLNNQSQIIIVT 1141


>gi|296420428|ref|XP_002839772.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295635976|emb|CAZ83963.1| unnamed protein product [Tuber melanosporum]
          Length = 1245

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/312 (16%), Positives = 113/312 (36%), Gaps = 37/312 (11%)

Query: 6   KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           K+  L +  F++Y     + F D+  T  +G NG GK+N ++AISF+   +    R A  
Sbjct: 8   KLVRLELFNFKSYKGHQTIYFGDSYFTSIIGPNGSGKSNCMDAISFVLGIKSSQLRSAHL 67

Query: 62  ADVTRIG---------------SPSFFSTFARVEGMEGLADISIK-----LETRDDRSVR 101
            D+   G               +    + +   +G E L   +I          +++ V 
Sbjct: 68  RDLIYRGRVLKTSGPKKPSDPKTAWVMAVYLNDDGEEQLWKRAITSAGASEYRINNKQVT 127

Query: 102 CLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRM 159
            +Q ND +      L K          ++ I S    +  R ++++  +++    + R  
Sbjct: 128 AVQYNDALEEEN-ILIKARNFLVFQGDVEAIASQSPKDLTRLIEQISGSLEFKAEYERLK 186

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE---LGVKINIARVEMINALSSLIMEYV 216
           ++ E+     N  L      ++     + Q  E      K +     ++  +   +  + 
Sbjct: 187 MEQEKAAETSNFNLNRRRGINAEIKQYQEQKKEAENYQAKQDEKHEAVVTHILWKLFHFQ 246

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
           +       ++        +  + F    E+Y  KL + ++  +++ R   G  + +  + 
Sbjct: 247 RSVELNKQEIE----RHQEELKEFRRAHEKYYGKLEEAKREQALANR---GVSKQERAIK 299

Query: 277 YCDKAITIAHGS 288
             +K +     S
Sbjct: 300 RREKEVEEKESS 311


>gi|295099735|emb|CBK88824.1| SMC proteins Flexible Hinge Domain./RecF/RecN/SMC N terminal
           domain. [Eubacterium cylindroides T2-87]
          Length = 526

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 130/393 (33%), Gaps = 79/393 (20%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRR-A 59
           + +K + +  F+++A   +  F+   T  VG NG GK+N+ +AI   L     +  R  +
Sbjct: 1   MFLKRIELQGFKSFADKTIIQFENDITGIVGPNGCGKSNVNDAIRWVLGEQSVKSLRSGS 60

Query: 60  SYADVTRIGSP-----SFFSTFARVEGMEGL-----ADISIKLETRDDRSVRCLQINDVV 109
           S AD+   GS      +        +    +      +I I  + +   +     IN   
Sbjct: 61  SMADIIFSGSEYRKPVNMAKVTLVFDNSTKVFDSPFEEIEITRQLQRSTNEASYFINKTP 120

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMI 160
            R + ++   +  + L      I +             +RR   +             + 
Sbjct: 121 CR-LKDITDLVMDTGLGRDSLSIITQGNISSFADAKPEDRRLLFEE---------AAGVS 170

Query: 161 DFERLMRGRNRLLTEGYFD----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
            +++  +     L +   +          +E Q+  L  +      + +           
Sbjct: 171 KYKKRKKISLNKLNQTKENLDRLQDILDELERQLTPLSRQ-AKKAEKFLKL--------- 220

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
            +E    I++S+      +  +S  +  E+  K LF+ + + +    +L    + DL + 
Sbjct: 221 -REELSKIEISVL----AEEIESLNSQIEKLQKSLFENKTIYTSKEASL---SKQDLDIM 272

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP-----ILLLDEISAHLDEDKR 331
              K +                   A  + I+   G           L++    LDE ++
Sbjct: 273 DLRKEM------------------YALDKQINELQGEYTKAMEESYQLEKRKVELDEKRK 314

Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
            A+         +   T  D++ F+  +  A+F
Sbjct: 315 YAMSMADNAKRKEQLKTLVDEARFEYFDHKARF 347


>gi|300174121|ref|YP_003773287.1| hypothetical protein LEGAS_1820 [Leuconostoc gasicomitatum LMG
          18811]
 gi|299888500|emb|CBL92468.1| conserved hypothetical protein [Leuconostoc gasicomitatum LMG
          18811]
          Length = 528

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----- 55
          M+N   I  +++  F+ +      F+    + +G+N  GK++IL+AI  +   +G     
Sbjct: 1  MSND-YISKISLKNFKKFKESEFEFNPNLNVIIGENAAGKSSILQAIDIVLNQKGIDDRR 59

Query: 56 FRR 58
          FR 
Sbjct: 60 FRN 62


>gi|262375657|ref|ZP_06068889.1| chromosome segregation protein SMC [Acinetobacter lwoffii SH145]
 gi|262309260|gb|EEY90391.1| chromosome segregation protein SMC [Acinetobacter lwoffii SH145]
          Length = 1150

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 105/295 (35%), Gaps = 54/295 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F    T  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLHFKDNRTAVVGPNGCGKSNVIDAIRWVMGESSARQLRGGS 60

Query: 61  YADVTRIGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G+              F +T+ ++ G     +  + +  + +R  +    +N 
Sbjct: 61  MQDVIFTGTAKRKPVGMASVELRFDNTYGKLGGAYNAYN-ELAVRRQVNRDGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   R++   +        RRR 
Sbjct: 120 SKCRRRDITDIFLGTGLGPRSYAIIEQGMINRLVDAKPDEMRVYIEEAAGVSRYQARRR- 178

Query: 144 LDRMVFAIDP--RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
               +  +D   ++  R+ D    ++ + + L      +     +E Q+  + ++I   +
Sbjct: 179 --ETMLHLDHTTQNLSRLGDIASELKSQLKTLKRQSESAIQYKELEGQIRTIKIEILSFQ 236

Query: 202 VEMINALSS--LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            E    L     +      ENF  ++  LT       +    +  E + + +   
Sbjct: 237 CEQSQRLQEEYTLEMNTLGENFKLVRSELTS-----VEHDLGSTSELFQRLIQQS 286


>gi|194755383|ref|XP_001959971.1| GF11775 [Drosophila ananassae]
 gi|190621269|gb|EDV36793.1| GF11775 [Drosophila ananassae]
          Length = 688

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 18/124 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + +K L +  F++Y     +  FD + T   G NG GK+NIL++I F   +S  +  R +
Sbjct: 1   MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +           +G E   +IS+  +       + L IN 
Sbjct: 61  ALQDLVYKNGQAGITKATVTIVFDNTNAAQCPQGYEKCREISVTRQVVVGGKNKFL-ING 119

Query: 108 VVIR 111
            +++
Sbjct: 120 KLVQ 123


>gi|166363849|ref|YP_001656122.1| chromosome segregation protein [Microcystis aeruginosa NIES-843]
 gi|166086222|dbj|BAG00930.1| chromosome segregation protein [Microcystis aeruginosa NIES-843]
          Length = 1176

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/166 (22%), Positives = 62/166 (37%), Gaps = 26/166 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + +S F+++     + F    T+  G NG GK+NIL+A+ F   L+  +G R   
Sbjct: 2   VYIKKVELSHFKSFGGTTPIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61

Query: 61  YADVT-------RIGSPSFFSTFARVEGMEGLADISIKLETR-----DDRSVRCLQINDV 108
             D+        R  + +  S    +  +    D    +  R              IN  
Sbjct: 62  LPDLVNHSYNSQRHSTEASVSVTFDIADIPDATDRDWTVSRRLKVAKGGSYTSTYYINGE 121

Query: 109 VIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145
               V EL+  L    + P          + RI S  + ERR  +D
Sbjct: 122 TC-TVSELHDQLNRLRIYPEGYNVVLQGDVTRIISMNAKERREIID 166


>gi|49481879|gb|AAT66651.1| DNA repair and genetic recombination protein [Geobacillus
           thermoleovorans]
          Length = 573

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFXIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G+       A +EG+  L D           + ++  D                 +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   V+ ++   L           +           LD             +  + R 
Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  R   L          S  E QMA         R++++       +E    E     +
Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + AL++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|47213556|emb|CAF91830.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1110

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 27/236 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + I  F++YA    +  FD       G NG GK+NIL++I FL   S     R +
Sbjct: 1   MHIKSIIIEGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLTHVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQGGITKATVSITFDNSNKSQSPLGFETHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM + +
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQ 217
           ++   +     E          ++ ++     K+   R   +    L   I    +
Sbjct: 178 KISAQKTIEKKEAKLKEIQT-ILDEEITPTMQKLQEERSSYLEYQKLMREIQHLTR 232


>gi|328710132|ref|XP_001946952.2| PREDICTED: structural maintenance of chromosomes protein 2-like
           [Acyrthosiphon pisum]
          Length = 1660

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 18/142 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK L I  F++Y   + L  FD +     G NG GK+NIL+AI F   +S     R +
Sbjct: 1   MHIKSLVIDGFKSYGKRVELNNFDPEFNAITGLNGTGKSNILDAICFTLGISAMNTIRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARV---------EGMEGLADISIKLETRDDRSVR-CLQIND- 107
           +  DV  + G     +    +                +  I +        +   +IN  
Sbjct: 61  TMQDVIYKSGQAGVHTATVTITFDNKDKSRSAPHYTHNDEIVISREVGMGSKNTYRINGL 120

Query: 108 -VVIRVVDELNKHLRISWLVPS 128
            V  + + +    L+++   P 
Sbjct: 121 TVPAKKIMDFFNSLQMNVNNPH 142


>gi|324993382|gb|EGC25302.1| DNA repair protein RecN [Streptococcus sanguinis SK405]
 gi|324995305|gb|EGC27217.1| DNA repair protein RecN [Streptococcus sanguinis SK678]
 gi|325690174|gb|EGD32178.1| DNA repair protein RecN [Streptococcus sanguinis SK115]
          Length = 552

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD         +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLHLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|170289417|ref|YP_001739655.1| chromosome segregation protein SMC [Thermotoga sp. RQ2]
 gi|281412999|ref|YP_003347078.1| chromosome segregation protein SMC [Thermotoga naphthophila RKU-10]
 gi|170176920|gb|ACB09972.1| chromosome segregation protein SMC [Thermotoga sp. RQ2]
 gi|281374102|gb|ADA67664.1| chromosome segregation protein SMC [Thermotoga naphthophila RKU-10]
          Length = 1170

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++K L +  F+++    L  F  + T  VG NG GK+NI++AI ++   +     R + 
Sbjct: 1   MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASE 60

Query: 61  YADVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             D+   GS +     S +  +   E   +I++  E +         +N   +R+ D
Sbjct: 61  KFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELK-RTGENTYYLNGSSVRLKD 116


>gi|15922571|ref|NP_378240.1| hypothetical protein ST2240 [Sulfolobus tokodaii str. 7]
 gi|15623361|dbj|BAB67349.1| 494aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 494

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI    +  FR+ +++RL       + VG NG GKTN+L AI   
Sbjct: 1  MKIINFYVDNFRSLSNIRLEDLGGLNVIVGYNGYGKTNLLTAIYLF 46


>gi|125974387|ref|YP_001038297.1| SMC protein-like protein [Clostridium thermocellum ATCC 27405]
 gi|125714612|gb|ABN53104.1| SMC protein-like protein [Clostridium thermocellum ATCC 27405]
          Length = 688

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + +  L I  FR+     + F     + VG N  GK+NI++A+  
Sbjct: 1  MFVSKLLIRNFRSIEKESIDFRPGKNVLVGKNNSGKSNIVKALDL 45


>gi|156083559|ref|XP_001609263.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154796514|gb|EDO05695.1| hypothetical protein BBOV_IV000970 [Babesia bovis]
          Length = 171

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           K+  + +  F N+ +L +       +  G NG GK+ I++ ++    G G        + 
Sbjct: 32  KVIRVQLVNFLNHENLVVNCSPYLNMIFGMNGQGKSAIVQGMALCFGGYGHSAGRDTALA 91

Query: 66  RIGSPSFFST---FARVE 80
                    +   FARVE
Sbjct: 92  HYIKDYHLRSGPNFARVE 109


>gi|312877060|ref|ZP_07737033.1| SMC domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796201|gb|EFR12557.1| SMC domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 935

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 57/311 (18%), Positives = 107/311 (34%), Gaps = 37/311 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + IK+L I  F+++    R+ F    T  VG NG GK+NI +AI +    +     R A 
Sbjct: 1   MYIKWLEIYGFKSFCEKTRIEFQKGITAIVGPNGCGKSNITDAIRWALGEQSLKILRAAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+       F       +   G+  I    + +  R  RS      IN +  R
Sbjct: 61  QEDLIFAGTEKRKSQGFAEVSICFDNSSGVLPIDYQEVVITRRLFRSGESEFFINKIPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I +   +ER R  +        ++R+   + E
Sbjct: 121 LKDVYELFLDSGLGKDGYSIISQGRVDEIINARPVERYRIFEEACGITKYKYRKE--ETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R ++                  +  Q+ E+   +  A         + +    + ++   
Sbjct: 179 RKLK---ATEENIQRLQDVIFELSTQLEEIKPDVQKA--------KTYLQINQKLQSLKK 227

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            K      L GK    F   +++  ++L    +   + R      +++ L +D   + + 
Sbjct: 228 EKYVYEYNLTGKSYHDFLTKEKQLNEELEKLIQ---LRRELEESINQNKLQMDLLTQEVE 284

Query: 284 IAHGSTGEQKV 294
               S  E K 
Sbjct: 285 KTRLSYDEIKS 295


>gi|293402160|ref|ZP_06646298.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304267|gb|EFE45518.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 434

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 54/403 (13%), Positives = 128/403 (31%), Gaps = 70/403 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +KI    +   +   ++++       T+  G N  GKT++++++++   G  ++ +S A 
Sbjct: 3   VKINRFELENVKRIKAVKVEPSPKGLTVIGGKNNQGKTSVIDSLAWALGGERYKPSSAAR 62

Query: 64  --VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-------------- 107
                  +     +   V   +G       ++ + ++  + L +N               
Sbjct: 63  DGSVTPPNMRVVMSNGLVVERKGKNSSLKVIDPKGNKGGQQL-LNGFIEELALNLPKFMQ 121

Query: 108 -VVIRVVDELNKHLRI--SWLVPS-------MDRIFSGLSMER-RRFLDRMVFAIDP--- 153
                    L + + +                +R+  G   +R +++ D M++  D    
Sbjct: 122 ATSKEKASILLQIIGVGDQLQNLERQEKETYNERLMVGRDADRKKKYADEMIYYADAPKD 181

Query: 154 -RHRRRMIDFERLMRGRN--RLLTEGYFDSSWCS---------SIEAQM-------AELG 194
                 +I  ++ +  RN          D              ++E Q+       AE  
Sbjct: 182 LISASELIQQQQAILARNGENARKREKVDQYAWELDQSNRTVAALEKQLEDAKAKQAEAA 241

Query: 195 VKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
             + IAR + ++       E  Q   +   + + +   LD +  +      ++  +KL  
Sbjct: 242 NNLAIARKDAMDLQDESTEELEQNIADVEQVNIKVRANLDKEKAEEDAKRLQDEYEKLTG 301

Query: 254 GRKMDSMSRRTLIG--------PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             +     + TL+             D  + Y  +      GS  EQ      + +A A 
Sbjct: 302 TIEKIREQKITLLNNAHLPLPELSVQDGEITYKGQKWDNMSGS--EQ------LKVATA- 352

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            I          +  +    +D +      + + + G Q   T
Sbjct: 353 -IVRELNPECGFVFIDKLEQMDIETMEEFGKWLENEGLQAIAT 394


>gi|325115837|emb|CBZ51392.1| putative structural maintenance of chromosome domain-containing
           protein [Neospora caninum Liverpool]
          Length = 1519

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + IK + I  FR Y     + F   +   VG NG GK+N+L AI+F     G   ++   
Sbjct: 1   MYIKEVTIRGFRTYRHSTTIRFSPGYNCIVGTNGSGKSNVLLAIAFALGEGGH-SSAERR 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
           +      +       VE +   AD  + +   D+  +R +
Sbjct: 60  MLLHEGVNERVPDGSVEVLLSNADRRLCMYDADEVQIRRV 99


>gi|306819821|ref|ZP_07453476.1| possible chromosome segregation protein Smc [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304552190|gb|EFM40126.1| possible chromosome segregation protein Smc [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 1177

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++     +         VG NG GK+NIL+AI   L     +  R   
Sbjct: 1   MYLKAIEIRGFKSFMDKTVINLPRGMISIVGPNGSGKSNILDAIRWVLGEQSVKSLRSEK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             DV   G+ S            ++  +   DI         ++ R       IN    R
Sbjct: 61  MQDVIFAGTQSKSQLGMCEVSLIIDNEDRQIDIEYTELAIKRKTYRNGESQFFINGKKCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|253742161|gb|EES99008.1| SMC4-like protein [Giardia intestinalis ATCC 50581]
          Length = 1434

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)

Query: 7  IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYA 62
          +  L +  F++YA   +   F    +  +G NG GK+N+++++ F+     R  R +  A
Sbjct: 6  LTKLRLVNFKSYAGEHILGPFKPYFSCILGANGSGKSNVIDSLLFVFGWRARALRHSRLA 65

Query: 63 DVTRIGSPSFFSTFARVE 80
          D+    S       ARV+
Sbjct: 66 DLIHTSSEHPELDHARVD 83


>gi|154686010|ref|YP_001421171.1| hypothetical protein RBAM_015770 [Bacillus amyloliquefaciens FZB42]
 gi|154351861|gb|ABS73940.1| Smc [Bacillus amyloliquefaciens FZB42]
          Length = 1186

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 90/269 (33%), Gaps = 35/269 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L++  F+++   + + F    T  VG NG GK+NI EAI   L     R  R   
Sbjct: 1   MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITEAIRWVLGEQSARSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRV 112
             D+   GS S            ++  +    I    + +  R  RS     + +     
Sbjct: 61  MEDIIFAGSDSRKRLNLAEVTLTLDNEDHFLPIDYHEVSVTRRVYRSGESEFLINNQQCR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S           + +RR   +             +    
Sbjct: 121 LKDIIDLFMDSGLGKEAFSIISQGKVEEILSSKAEDRRSIFEEA--------AGVLKYKT 172

Query: 164 RLMRGRNRLLT---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           R  +  N+L                +E Q+  L ++ +IA  + +     L    +    
Sbjct: 173 RKKKAENKLFETQDNLNRVEDILHELEDQVEPLKIQASIA-KDYLEKKKELEHVEIALTA 231

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           F   +L   G   G  D+   A +EE A+
Sbjct: 232 FDIEELH--GRWSGLKDKVQAAKEEELAE 258


>gi|49481901|gb|AAT66662.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A93]
          Length = 573

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 93/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G+       A +EG+  L D           + ++  D                 +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   V+ ++   L           +           LD             +  + R 
Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  R   L +        S  E QMA         R++++       +E    E     +
Sbjct: 166 VYERYEELGKKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + AL++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|301060264|ref|ZP_07201131.1| RecF/RecN/SMC N-terminal domain protein [delta proteobacterium
          NaphS2]
 gi|300445776|gb|EFK09674.1| RecF/RecN/SMC N-terminal domain protein [delta proteobacterium
          NaphS2]
          Length = 402

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I  L +  F++   ++     +  + +G NG GK+N+LEAI  LS      R     ++R
Sbjct: 2  IDKLEVRGFKSIERIQFEPG-RVNVLIGSNGSGKSNLLEAIGVLSAAV-HGRVDDEALSR 59

Query: 67 IG 68
           G
Sbjct: 60 RG 61


>gi|332522490|ref|ZP_08398742.1| chromosome segregation protein SMC [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313754|gb|EGJ26739.1| chromosome segregation protein SMC [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 1181

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ F+   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKKIEMQGFKSFADKTKIEFEKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             D+   G+ S  +  FA V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDIIFAGTESRNALNFAEVAIVLDNSDEFIKAAGKEIRVERHIYRNGDSDYLIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    ERR   +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFE 162


>gi|302383808|ref|YP_003819631.1| chromosome segregation protein SMC [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194436|gb|ADL02008.1| chromosome segregation protein SMC [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 1145

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 61/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           ++ + L +  F+++     +  +   T  VG NG GK+N+LE++ ++         R   
Sbjct: 1   MQFQRLRLVGFKSFVDPAEVQIEPGLTGVVGPNGCGKSNVLESMRWVMGANSAKAMRGTG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G+      +       ++  +  A         I++  R DR      +IN  
Sbjct: 61  MDDVIFAGASNRPPRNHAEVSLTIDNAQRKAPQPFTDSAIIEVSRRIDRGQGSTYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + +     RRR L+
Sbjct: 121 EVRARDVQLLFADASTGANSPALVRQGQISELIAAKPQNRRRILE 165


>gi|16800473|ref|NP_470741.1| DNA repair and genetic recombination [Listeria innocua Clip11262]
 gi|16413878|emb|CAC96636.1| DNA repair and genetic recombination [Listeria innocua Clip11262]
 gi|313623865|gb|EFR93982.1| DNA repair protein RecN [Listeria innocua FSL J1-023]
          Length = 563

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG       D  R
Sbjct: 2   LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----STDFIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G               +     A +E     +D  + LE    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFALAEDNLACRNALLENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    +     +++    +++ ++R 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPALTKYQTNFKEYQTILRE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197


>gi|302504789|ref|XP_003014353.1| hypothetical protein ARB_07660 [Arthroderma benhamiae CBS 112371]
 gi|291177921|gb|EFE33713.1| hypothetical protein ARB_07660 [Arthroderma benhamiae CBS 112371]
          Length = 1194

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 92/313 (29%), Gaps = 35/313 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I  + ++ F  Y S       +  + +G NG GK+  + AI   L  G  +  R    A+
Sbjct: 120 IVRVKLTNFVTYTSAECHPGPRLNMVIGPNGTGKSTFVCAICLGLGWGPSYLGRAKDVAE 179

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL------- 116
             + G+             +   +  I    + + +     IN   +R    L       
Sbjct: 180 FVKHGADEATIEIELKARADMDQNPIICRTIKREGNKSTFSINGKPVRQNVVLSLAKSFS 239

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG----RNRL 172
            +   +   +P      S  +      +D +           M+ +   ++     +  +
Sbjct: 240 IQIDNLCQFLPQDK--VSEFAALSP--IDLLHSTQRAAAGPEMVKWHDGLKELRTGQKEI 295

Query: 173 LTEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
           L E        +S+E   QM    V+    R E+   L    +E       P        
Sbjct: 296 LEESKNQREHLASLEKRQQMQREDVERMKQREEIKKRLK--FLEM--SRPLPRF------ 345

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GS 288
                  +    + E+  + L + ++++      L   +         +  +        
Sbjct: 346 ---NSCKKETSEVLEQKQRLLREQQELERKLEPALRAVNSKRAYYSKIEAVLKQKRVLSQ 402

Query: 289 TGEQKVVLVGIFL 301
            GE+    +   L
Sbjct: 403 RGEEAATAISEKL 415


>gi|255021567|ref|ZP_05293610.1| Chromosome partition protein smc [Acidithiobacillus caldus ATCC
           51756]
 gi|254968955|gb|EET26474.1| Chromosome partition protein smc [Acidithiobacillus caldus ATCC
           51756]
          Length = 1154

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 100/292 (34%), Gaps = 41/292 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + +  F+++    ++  +A   + VG NG GK+NI++AI ++   S  R  R A 
Sbjct: 1   MRLSAIRLHGFKSFRERTQIRLEANPVVIVGPNGCGKSNIVDAIRWVLGESSARQLRGAQ 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   G+     ++ A VE     +             I++  R  R      +IND 
Sbjct: 61  MVDVISNGADGRATASEAMVELTFDNSAAKAPAPWTPVPEIRVGRRLSRDGDSQYRINDA 120

Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRFL 144
             R  D                  E     RI    P   R     +       ERRR  
Sbjct: 121 RCRRRDVADLFLGTGLGSNAYAIIEQGTIGRIVEARPEELRAILEEAAGVSRYKERRRES 180

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204
            + +      H +R+ D    +  R  +L      +    ++  +         +AR+E 
Sbjct: 181 QQRI-QETGEHLQRLYDLHGGLGERIAVLQRQAESARSLRALWQEQRRWRWWQLLARLEG 239

Query: 205 INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            +     + + + ++      L        +  +     ++  ++ L   ++
Sbjct: 240 ASVAHERLCQRMSRQEEQAATLQRELAQLSRQQEGLQERRQNCSEDLRQAQE 291



 Score = 36.4 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              +   +   S GE+ +  + +  A   L       AP  +LDE+ A LD+        +
Sbjct: 1045 GKRNAHLQQLSGGEKALTALALVFALFAL-----NPAPFCVLDEVDAPLDDANVGRFCAL 1099

Query: 338  VTDIGSQI 345
            +T++  Q 
Sbjct: 1100 LTELAQQT 1107


>gi|256372279|ref|YP_003110103.1| SMC domain protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008863|gb|ACU54430.1| SMC domain protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 1115

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           ++++ L +  F+++A  + + F +     VG NG GK+N+++A++++   +     R A 
Sbjct: 1   MRLRALTMRGFKSFADPVTVRFGSGINAIVGPNGSGKSNVVDALTWVLGTQSPRMLRLAR 60

Query: 61  YADVTRIGS---PSFFSTFARV-----EGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             +V   GS   P+       +     +   GL    I L  R +R      +IN    R
Sbjct: 61  MDEVIFQGSAHRPALGRAEVELTLDDPDDESGLGVAEIALTRRVERGGEASYRINGRAAR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LQD 123


>gi|239826793|ref|YP_002949417.1| ATP-dependent OLD family endonuclease [Geobacillus sp. WCH70]
 gi|239807086|gb|ACS24151.1| ATP-dependent OLD family endonuclease [Geobacillus sp. WCH70]
          Length = 634

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K+  L +  FR Y    + F     + +G N +GK+ ++EA+     G
Sbjct: 1  MKLHSLYLKNFRGYREEVINFSENMNVIIGKNDIGKSTLMEALEIFFNG 49


>gi|255033715|ref|YP_003090159.1| hypothetical protein gp32 [Burkholderia phage KS9]
 gi|254832753|gb|ACT82996.1| hypothetical protein gp32 [Burkholderia phage KS9]
          Length = 434

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          ++ L++ + R ++ L + F+A      G NG GKT+IL AIS     +  
Sbjct: 25 LESLHLRDVRQFSELNVQFNAGFNFIAGPNGCGKTSILTAISHCFHYQSL 74


>gi|294055882|ref|YP_003549540.1| chromosome segregation protein SMC [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615215|gb|ADE55370.1| chromosome segregation protein SMC [Coraliomargarita akajimensis
           DSM 45221]
          Length = 1241

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 93/264 (35%), Gaps = 39/264 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + IS F+++A   RL      T  VG NG GK+NI++AI   L     +  R AS
Sbjct: 1   MYLKEIVISGFKSFADRTRLDLRRGVTAVVGPNGCGKSNIVDAIRWVLGEQSAKALRGAS 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIR 111
             DV   G+             TF   E   G A   +++  R  R       IN  V R
Sbjct: 61  MQDVIFEGTDKRKGLPYCEVALTFTDCEAELGTAFNEVEISRRVTREGGSDYYINGKVSR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + +      L   +D+I S    ERR   +             +  ++
Sbjct: 121 LKDIQRLFANTGVGRVSYSFMLQGQIDQILSTNPAERRTIFEEAAG---------ITLYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENFP 222
                R   L +     +  + +   + E+G +I ++ R          I   +      
Sbjct: 172 A---QRKEALNKLSLVDANLARVTDVIEEVGRQIGSLKRQASKALRYQRIKHRLS----- 223

Query: 223 HIKLSLTGFLDGKFDQSFCALKEE 246
           H+ L+   +      +S   + + 
Sbjct: 224 HLDLAFNAYRHQNLSESIDKVAKR 247


>gi|288905743|ref|YP_003430965.1| Chromosome segregation protein SMC [Streptococcus gallolyticus
           UCN34]
 gi|325978775|ref|YP_004288491.1| chromosome partition protein smc [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732469|emb|CBI14041.1| Chromosome segregation protein SMC [Streptococcus gallolyticus
           UCN34]
 gi|325178703|emb|CBZ48747.1| chromosome partition protein smc [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 1179

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 128/387 (33%), Gaps = 54/387 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A    + FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEMQGFKSFADKTTIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+      ++      ++  +G    A  +I++E            I+   +R
Sbjct: 61  MPDVIFAGTENRKPLNYAQVIVTLDNSDGFIKDAKETIRVERHIYRNGDSEYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSVISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVEM--------INAL 208
             +      L       Y   +    +E Q A++  +   +   R ++        I A 
Sbjct: 179 TKLNQTQDNLDRLDDIIYELETQVKPLERQ-AQVAKEFLGLEDERKQLHLNILVEDIQAD 237

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIG 267
              + E  Q        L+       +F++    LKE+  +   +  R+ + +   T   
Sbjct: 238 KERLAELNQSLTAIKADLTAYYEQRQQFERQNQNLKEKRHQLSEEISRRQEGLLDITRAI 297

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA-----HARLISN-TTGFAPILLLDE 321
              SDL        +     S  E+K       LA      ARL          +  LD 
Sbjct: 298 ---SDLE---RQMDLIALESSQKEEKKQAASSQLADLKENQARLTEELAQKEQQLSQLDA 351

Query: 322 ISAHL--DEDKRNALFRIVTDIGSQIF 346
             A    D     A     +    Q+ 
Sbjct: 352 KLAQTTADIQALQAELDRFSTDPDQVI 378


>gi|220931569|ref|YP_002508477.1| chromosome segregation protein SMC [Halothermothrix orenii H 168]
 gi|219992879|gb|ACL69482.1| chromosome segregation protein SMC [Halothermothrix orenii H 168]
          Length = 1185

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K L +  F+++A  + + F++  T  VG NG GK+NI++AI ++      +  R + 
Sbjct: 1  MFLKKLELKGFKSFAKPITINFESPITAIVGPNGSGKSNIVDAIRWVLGEQSAKTLRGSR 60

Query: 61 YADVTRIGSPSF 72
           ADV   GS  +
Sbjct: 61 MADVIFAGSKDY 72


>gi|315223291|ref|ZP_07865152.1| DNA repair protein RecN [Streptococcus anginosus F0211]
 gi|315187723|gb|EFU21477.1| DNA repair protein RecN [Streptococcus anginosus F0211]
          Length = 552

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 93/279 (33%), Gaps = 37/279 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IG-------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G                        +G++   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGASKTEIEGLFAIEQSKALVEIFEQQGLDMTEELIIRREIFQ-NGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+               F D   F +   +++    + +L +  
Sbjct: 116 VLRAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDDAFFKLKADYQQIFDQYRQLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINALS-----SLIMEY 215
             +      + +    +E Q+AE+            +N  R +++N        +     
Sbjct: 176 LTIQKNQEENKARIDMLEYQIAEIEAANLKAGEDLALNQERDKLLNHKQIADTLTNAYAM 235

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
           +  E F  +    +   D +  + + A  +E A  L + 
Sbjct: 236 LDDEEFSSLANVRSAMNDMEAIEDYDATYKEIATNLSES 274


>gi|308184170|ref|YP_003928303.1| hypothetical protein HPSJM_01950 [Helicobacter pylori SJM180]
 gi|308060090|gb|ADO01986.1| hypothetical protein HPSJM_01950 [Helicobacter pylori SJM180]
          Length = 370

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+N+ + ++    +  I  G N  GK+N+LEA+ +L  G+ 
Sbjct: 2  IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49


>gi|221043536|dbj|BAH13445.1| unnamed protein product [Homo sapiens]
          Length = 516

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 92/272 (33%), Gaps = 26/272 (9%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL-MRGRN 170
            +  L K                  + +R   L + +   +     +  D +RL +  R 
Sbjct: 123 KLGILIKARNFLVFQVKKYHRLKEEASKRAATLAQELEKFNR---DQKADQDRLDLEERK 179

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
           ++ TE           E Q      K      E I      + E  + E     ++ +  
Sbjct: 180 KVETEAKIKQKLREIEENQ------KRIEKLEEYITTSKQSLEEQKKLEGELTEEVEMAK 233

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
               + ++    + E+      D ++     R
Sbjct: 234 RRIDEINKELNQVMEQLGDARIDRQESSRQQR 265


>gi|148270693|ref|YP_001245153.1| chromosome segregation protein SMC [Thermotoga petrophila RKU-1]
 gi|147736237|gb|ABQ47577.1| condensin subunit Smc [Thermotoga petrophila RKU-1]
          Length = 1170

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++K L +  F+++    L  F  + T  VG NG GK+NI++AI ++   +     R + 
Sbjct: 1   MRLKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASE 60

Query: 61  YADVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             D+   GS +     S +  +   E   +I++  E +         +N   +R+ D
Sbjct: 61  KFDMIFAGSENLPPAGSAYVELVFEENGEEITVARELK-RTGENTYYLNGSSVRLKD 116


>gi|227892634|ref|ZP_04010439.1| chromosome segregation protein Smc [Lactobacillus ultunensis DSM
          16047]
 gi|227865566|gb|EEJ72987.1| chromosome segregation protein Smc [Lactobacillus ultunensis DSM
          16047]
          Length = 1189

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +  L +  F+++A   +  F+   T  VG NG GK+NI EAI ++   S  +  R  +
Sbjct: 1  MPLTELVLDGFKSFADKTIIHFNDGITGIVGPNGSGKSNITEAIRWVMGESSAKSLRGTN 60

Query: 61 YADVTRIGSP 70
            DV   GS 
Sbjct: 61 MKDVIFAGSQ 70


>gi|226311933|ref|YP_002771827.1| DNA repair protein [Brevibacillus brevis NBRC 100599]
 gi|226094881|dbj|BAH43323.1| DNA repair protein [Brevibacillus brevis NBRC 100599]
          Length = 574

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 87/273 (31%), Gaps = 44/273 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    S+ + F     I  G+ G GK+ I++A+  L  GR     + AD  R
Sbjct: 2   LVELSIRNFAIIKSVTISFQKGLNILTGETGAGKSIIIDALGLLLGGR-----ASADFVR 56

Query: 67  IGSPSFFS-------------TFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G P                    +  G++   D  + +        +  ++IN  ++ +
Sbjct: 57  YGEPRAEVEGLFELPPGHPGLDVCKNVGVQIEQDGMLVVRRDISNQGKSIIRINGQLVTL 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM-------VFAIDPRHRRRMIDFE 163
             + EL   L           +         + ++ +       + A    +      + 
Sbjct: 117 AMLRELGPWLVTVHGQHDTHMLMQSD-----KHINWLDAYGESALGAAKQEYSTLYTAYR 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEM--INALSSLI 212
           +  +   R+             ++ Q+ E+           K+   R +   I  + S I
Sbjct: 172 KTKQDLERMARNDRELVQRIDLLQYQLDEIESATLTPGEDEKLMQQRKKWMNIEKVYSTI 231

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            +  +  +     +   G   G+ ++     ++
Sbjct: 232 QDAYRALHGDQKGMDWLGHAMGELERGVNYEEQ 264


>gi|146421940|ref|XP_001486913.1| hypothetical protein PGUG_00290 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1256

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/287 (16%), Positives = 104/287 (36%), Gaps = 30/287 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           ++  L +  F++Y  + ++ F     T  +G NG GK+N+++AISF+        R  + 
Sbjct: 48  RLVGLELYNFKSYRGTCKVGFGDSFFTSIIGPNGAGKSNMMDAISFVLGVNSSQLRSRNL 107

Query: 62  ADVT---RIGSPSFFS--------TFARVEGMEGLAD-ISIKLETRDDRSVRC-LQINDV 108
            D+    RIG  S           T A V+ +    D + ++L+     S     +IN+ 
Sbjct: 108 QDLIYRGRIGGDSAADTSFEHSNPTSAYVKAIYEKDDGLQLELKRTIGSSGNGDYKINNK 167

Query: 109 VIRVVDE---------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRR 157
            +              L K          +++I S    +  + ++ +  +  + P + +
Sbjct: 168 NVTAYQYSMVLKEENILIKARNFLVFQGDVEQIASQSPRDLAQLIETISGSGELKPEYDK 227

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIMEYV 216
              +++       ++       +S     + Q+AE        +  + I  L  L   Y 
Sbjct: 228 LKDEYDAAHEFTTQVFLHKKTLNSESRQYKEQLAEKETFETKLQERVDITKLLHLYKLYH 287

Query: 217 QKENFPHIKLSLTG-FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            ++    I   +     +    +     K+E   KL   +  D + +
Sbjct: 288 NEQKHAQISSEIGSKTEEIAKLELQIEEKKELYDKLVSAQAKDVLRQ 334


>gi|70606001|ref|YP_254871.1| hypothetical protein Saci_0157 [Sulfolobus acidocaldarius DSM
          639]
 gi|68566649|gb|AAY79578.1| conserved protein [Sulfolobus acidocaldarius DSM 639]
          Length = 495

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+    ++ FR+ +S++L       I VG NG GKTN+L AI   
Sbjct: 1  MKLIEFYVNNFRSISSVKLTGLGGLNIIVGYNGYGKTNLLTAIYLF 46


>gi|291567025|dbj|BAI89297.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 1026

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 8  KFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          + L +  F +Y    L F   HT    G NG GK+++LEAI++   G+  R  +  D+ +
Sbjct: 4  QKLTLKNFLSYRDASLDFSGLHTACICGPNGAGKSSLLEAIAWSIWGQS-RAGTEDDLIQ 62

Query: 67 IGSPSFFSTFARV 79
          IG       F  +
Sbjct: 63 IGETQMRVDFIFI 75


>gi|254470050|ref|ZP_05083454.1| DNA repair protein RecN [Pseudovibrio sp. JE062]
 gi|211960361|gb|EEA95557.1| DNA repair protein RecN [Pseudovibrio sp. JE062]
          Length = 557

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 81/243 (33%), Gaps = 34/243 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F    ++  G+ G GK+ +L+++S    GRG      A + R
Sbjct: 2   LASLSIRDIVLIHKLDLHFSDGMSVLTGETGAGKSILLDSLSLALGGRG-----DAGLVR 56

Query: 67  IGSPSFFSTFAR-----------VEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV-- 112
            G      T              ++  +   D  I L        R    +ND  +    
Sbjct: 57  HGEDRGQVTAVFDVPMAHPLRTLLQENDLEHDADIILRRVQASDGRTRAFVNDSPVSAGL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMR 167
           + ++   L           +        R+ LD         A      + +   E+ ++
Sbjct: 117 LRQIGALLVEVHGQHDDRALI--DPESHRQLLDSFGGLEGDAAKVSESAKAVRKAEKTLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEM--INALSSLIMEYVQKE 219
                + E   ++ +  S   +++ L        ++ + R +M  +  ++  + E  +  
Sbjct: 175 DHVARIEEARREADYLRSSADELSTLDPKEGEENELALRRQDMMQVEKIAGDLREGYEAL 234

Query: 220 NFP 222
           + P
Sbjct: 235 DGP 237


>gi|306833963|ref|ZP_07467087.1| cell division protein Smc [Streptococcus bovis ATCC 700338]
 gi|304423964|gb|EFM27106.1| cell division protein Smc [Streptococcus bovis ATCC 700338]
          Length = 1179

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 69/387 (17%), Positives = 129/387 (33%), Gaps = 54/387 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A    + FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEMQGFKSFADKTTIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+      ++      ++  +G    A  +I++E            I+   +R
Sbjct: 61  MPDVIFAGTENRKPLNYAQVIVTLDNFDGFIKDAKETIRVERHIYRNGDSEYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSVISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVEM--------INAL 208
             +      L       Y   +    +E Q A++  +   +   R ++        I A 
Sbjct: 179 TKLNQTQDNLDRLDDIIYELETQVKPLERQ-AQVAKEFLGLEDERKQLHLNILVEDIQAD 237

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIG 267
              + E  Q        L+       +F++    LKE+  +   +  R+ + +   T   
Sbjct: 238 KERLAELNQSLTAITADLAAYYEQRQQFERQNQNLKEKRHQLSEEISRRQEGLLDITRAI 297

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA-----HARLISNTT-GFAPILLLDE 321
              SDL        +     S  E+K       LA      ARL    T     +  LD 
Sbjct: 298 ---SDLE---RQMDLIALESSQKEEKKQAASSQLADLKENQARLTEELTQKEQQLSQLDA 351

Query: 322 ISAHL--DEDKRNALFRIVTDIGSQIF 346
             A    D     A     +    Q+ 
Sbjct: 352 KLAQTTADIQALQAELDRFSTDPDQVI 378


>gi|71903093|ref|YP_279896.1| chromosome partition protein smc [Streptococcus pyogenes MGAS6180]
 gi|71802188|gb|AAX71541.1| chromosome partition protein smc [Streptococcus pyogenes MGAS6180]
          Length = 1179

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 107/273 (39%), Gaps = 30/273 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ F    T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIELEGFKSFADKTKIEFYKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+ +     +A+V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDVIFAGTQNRNPLNYAKVAVVLDNSDHFIKTAKKEIRVERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQ--MAELGVKINIARVEM-INALSSLIMEYV 216
             +      L       Y   +  + +E Q  +A+  ++++  R ++ ++ L   I    
Sbjct: 179 IKLNQTQDNLDRLEDIIYELDTQLAPLEKQAKVAKQFLELDANRKQLQLDILVKDIDIAQ 238

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           +++      L+        +     +++E+Y K
Sbjct: 239 ERQTKDTEALAALQQDLASYYAKRQSMEEDYQK 271


>gi|52080957|ref|YP_079748.1| hypothetical protein BL01520 [Bacillus licheniformis ATCC 14580]
 gi|52786333|ref|YP_092162.1| hypothetical protein BLi02595 [Bacillus licheniformis ATCC 14580]
 gi|319645085|ref|ZP_07999318.1| RecN protein [Bacillus sp. BT1B_CT2]
 gi|52004168|gb|AAU24110.1| RecN [Bacillus licheniformis ATCC 14580]
 gi|52348835|gb|AAU41469.1| RecN [Bacillus licheniformis ATCC 14580]
 gi|317392894|gb|EFV73688.1| RecN protein [Bacillus sp. BT1B_CT2]
          Length = 576

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 83/264 (31%), Gaps = 43/264 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F+   T+  G+ G GK+ I++A+S L  GRG      ++  R
Sbjct: 2   LAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRG-----SSEYVR 56

Query: 67  IGSPSF-FSTFARVEGMEGLADI--SIKLETRDD----------RSVRCLQINDVVI--- 110
            G           ++G   + D+   + +E  DD                ++N  ++   
Sbjct: 57  YGEKRAELEGLFLLDGGHPVFDLCTELGIEASDDMIVMRRDINANGKSICRVNGKLVTIA 116

Query: 111 ------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                 R++ +++       L+     +         RF    +      ++     +  
Sbjct: 117 ALREVGRLLLDIHGQHDNQLLMEDEHHL-----QLLDRFAGEEIENALKAYQEVYSRYMD 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEM--INALSSLIM 213
           +M+    L       +     I+ Q+ E+            +   R ++     +   + 
Sbjct: 172 VMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQ 231

Query: 214 EYVQKENFPHIKLSLTGFLDGKFD 237
                       L   G    + +
Sbjct: 232 NAYNALRNEQAGLDWVGMASSELE 255


>gi|71004440|ref|XP_756886.1| hypothetical protein UM00739.1 [Ustilago maydis 521]
 gi|46095611|gb|EAK80844.1| hypothetical protein UM00739.1 [Ustilago maydis 521]
          Length = 1169

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 13/135 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ + +  F  +A+  + F  +    +G NG GK+ IL A+     G+     R +S  D
Sbjct: 128 VEKIELRNFMCHANFSIQFGPKLNFVMGRNGSGKSTILTALMIALGGKTSSTNRGSSLKD 187

Query: 64  VTRIGSPSFFSTFARV---------EGMEGLADISIKLETRDDRSVRCLQINDVVIRVV- 113
           + + G  S   T   +         +       I  ++      S +    N  VI    
Sbjct: 188 LVKKGESSATITVTMLNQGSDAFKPDVYGNTIVIERRILAEGGGSWKMKSGNGKVIATTK 247

Query: 114 DELNKHLRISWLVPS 128
            EL      + + P 
Sbjct: 248 SELESFCDFANIQPD 262


>gi|262197043|ref|YP_003268252.1| hypothetical protein Hoch_3860 [Haliangium ochraceum DSM 14365]
 gi|262080390|gb|ACY16359.1| hypothetical protein Hoch_3860 [Haliangium ochraceum DSM 14365]
          Length = 345

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--------PGRGFRR 58
           +  L I  FR +  L +    +  + VG+NGVGKT +LEA+   +          R    
Sbjct: 2   LPSLEIRGFRCFRELSIAPLGRINLIVGNNGVGKTALLEALRLHAAQGEALAELWRILET 61

Query: 59  ASYADVTRIGSPSFFSTF----ARVEGMEGLADISIKLETRDD 97
            S   + R              A  E      + SI + +R  
Sbjct: 62  RSEFAMMRASQERHRQVVDWPRAFYEPHVHTHEASISVGSRVG 104


>gi|160892685|ref|ZP_02073475.1| hypothetical protein CLOL250_00215 [Clostridium sp. L2-50]
 gi|156865726|gb|EDO59157.1| hypothetical protein CLOL250_00215 [Clostridium sp. L2-50]
          Length = 1185

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + ++ F+++A+ +   F+   T  VG NG GK+N+ +A+   L     +  R + 
Sbjct: 1   MYLKSIEVNGFKSFANKIVFKFNHGITCIVGPNGSGKSNVADAVRWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G+        A V      +D  + ++  +    R +         IN  V R
Sbjct: 61  MEDVIFSGTQLRKPQGSAYVAITLDNSDHHLPIDYNEVTVARRVYRSGESEYLINGTVSR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          +++I +G   ERR   D
Sbjct: 121 LKDVNSLFFDTGIGKEGYSIIGQGQIEKILNGKPEERRELFD 162


>gi|145591215|ref|YP_001153217.1| SMC domain-containing protein [Pyrobaculum arsenaticum DSM 13514]
 gi|145282983|gb|ABP50565.1| SMC domain protein [Pyrobaculum arsenaticum DSM 13514]
          Length = 702

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR---ASYAD 63
           I+ + +  F+ +A     F        G NG GKT+++EAIS    G  + R   + ++D
Sbjct: 2   IRRVELINFKAHAKAAFRFGEGVNFIYGPNGSGKTSLMEAISVALFGSTWVRKVGSKWSD 61

Query: 64  VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             R GS +     +   +G E +       E+    S   + +N  +I   D
Sbjct: 62  YLRRGSTAGEVRLYLSYQGGEVVIARRFG-ESGTSPSGTYMAVNGSIIARGD 112



 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 11/163 (6%)

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                S E ++ E   ++  AR ++     +L +    +     +K +            
Sbjct: 524 REQLQSTELELQEAVAELEKAREDLSKLDKALAVAKNVRGTLAELKPAARQIF------- 576

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
             A+ EE        R  D+     L+    R    +   +  I     S GEQ ++ + 
Sbjct: 577 LRAINEELNHVFLKLRHKDAFKSAQLVEANGRYVARISTPNGYIDHGLLSLGEQNLLALS 636

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
           + +A AR +    G AP ++LDE + HLDE+ R  +  +V D+
Sbjct: 637 LRVALARAL---LGGAPFMMLDEPTEHLDEEHRKRIVELVRDL 676


>gi|303245279|ref|ZP_07331563.1| SMC domain protein [Desulfovibrio fructosovorans JJ]
 gi|302493128|gb|EFL52990.1| SMC domain protein [Desulfovibrio fructosovorans JJ]
          Length = 395

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I  + I  F++ + + +    +  +F+G NG GK+NILEAI  +S    
Sbjct: 2  IDKIKIVGFKSLSDVSIDLG-KVNVFIGANGSGKSNILEAIGVMSAAAS 49


>gi|302670932|ref|YP_003830892.1| chromosome segregation protein Smc [Butyrivibrio proteoclasticus
           B316]
 gi|302395405|gb|ADL34310.1| chromosome segregation protein Smc [Butyrivibrio proteoclasticus
           B316]
          Length = 1185

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 103/318 (32%), Gaps = 37/318 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++A+ ++  F    T  VG NG GK+N+ +A+   L     +  R  S
Sbjct: 1   MYLKSIEIHGFKSFANKIKFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRIKQLRGGS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       +      ++  +    I    + +  R  RS      IN    R
Sbjct: 61  MQDVIFSGTELRKPLGYAYVAITLDNSDHSLAIDYDEVTVSRRLYRSGESEYMINGSSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I S    +RR   D     +    + R     
Sbjct: 121 LKDVNELFMDTGIGKEGYSIIGQGQIDQILSSKPEDRRNLFDEAAGIVK--FKSRKETAI 178

Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVKINIARVEM----INALSSLIMEY 215
           + +      LT      S        +E Q +E+  +    R  +    +N         
Sbjct: 179 KKLEEEKINLTRLSDILSELEKQIGPLEKQ-SEVAKEYLKFRERLKTLDVNMFLVENRNQ 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK-----KLFDGRKMDSMSRRTLIGPHR 270
            Q+       L +      +   S+   KEEY       ++ D    ++ +R T     +
Sbjct: 238 KQQLEDAEKNLEIAVNSLEQARTSYDKTKEEYENIQKKLEILDAEIDEARARITDSSVKK 297

Query: 271 SDLIVDYCDKAITIAHGS 288
             L          I   S
Sbjct: 298 EKLEGQIGILNEKIKAAS 315


>gi|227530553|ref|ZP_03960602.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus vaginalis ATCC 49540]
 gi|227349559|gb|EEJ39850.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus vaginalis ATCC 49540]
          Length = 1187

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 27/165 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  L +  F+++A    + F+   T  VG NG GK+NI+EAI ++   +     R   
Sbjct: 1   MQLLSLTLDGFKSFAQKTTIKFEPGMTGIVGPNGSGKSNIIEAIRWVMGEQSAHQLRGDK 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            ADV   GS              F ++   +        I+ KL    D       +N  
Sbjct: 61  MADVIFNGSSDRKPLNRALVSITFDNSDRYLASDFTELTITRKLYRNGDSE---YLVNGQ 117

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +R+ D         L +          ++ IF+G   +RR  ++
Sbjct: 118 EVRLKDITDLFIDSGLGRESFSIISQGQIEAIFNGKPADRRSIIE 162


>gi|170043308|ref|XP_001849335.1| structural maintenance of chromosomes protein 6 [Culex
           quinquefasciatus]
 gi|167866691|gb|EDS30074.1| structural maintenance of chromosomes protein 6 [Culex
           quinquefasciatus]
          Length = 1121

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62
           KI  + +  F  + ++ + F+ +  + VG+NG GK+ +L A++     S     R +S  
Sbjct: 68  KILKIQLKNFMCHRNMVVEFNKRANLLVGNNGSGKSAVLAALTIGLGCSASATNRSSSLK 127

Query: 63  DVTRIGSPSF 72
            + + G    
Sbjct: 128 QLIKHGESQA 137


>gi|126459089|ref|YP_001055367.1| SMC domain-containing protein [Pyrobaculum calidifontis JCM
          11548]
 gi|126248810|gb|ABO07901.1| SMC domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 346

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT- 65
          +K L +  +R      L   A   +FVG NG GK+++LEA+      + F       V  
Sbjct: 4  VKGLEVEGYRGLRKASLTDFAGINVFVGKNGSGKSSLLEALYIA--LKPFDG--LKHVVK 59

Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLE 93
          R G     S  A   G +    I I LE
Sbjct: 60 RRGWFGLASAEALFHGRDSEIKIRITLE 87


>gi|332685823|ref|YP_004455597.1| chromosome partition protein Smc [Melissococcus plutonius ATCC
           35311]
 gi|332369832|dbj|BAK20788.1| chromosome partition protein Smc [Melissococcus plutonius ATCC
           35311]
          Length = 1192

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 21/158 (13%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADRTIIDFENGVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+              ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MPDIIFAGTQERKPLNIAEVMIVLDNTDYYLPLDFSEISIMRRYRRTGESEFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141
           + D         L K          ++ IF+    +RR
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRR 158


>gi|115738152|ref|XP_794820.2| PREDICTED: similar to SMC6 protein [Strongylocentrotus purpuratus]
 gi|115944201|ref|XP_001188037.1| PREDICTED: similar to SMC6 protein [Strongylocentrotus purpuratus]
          Length = 1236

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 96/296 (32%), Gaps = 47/296 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I+ +++  F  +  L   F       VG NG GK+ IL AI     G+     R  S  +
Sbjct: 131 IEKISVKNFICHGRLECNFGPNVNFVVGRNGSGKSAILTAIVVGLGGKAIATSRGNSVKN 190

Query: 64  VTRIGSP-SFFSTFARVEGMEG--------LADISIKLETRDDRSVRCLQINDVVIRV-- 112
             + G   +      R  G +            ++ K+      S R       VI    
Sbjct: 191 FIKAGKNVAEVCIKLRNRGTDAYKPDVYGPSITVTRKIMREGGNSYRITSAKGKVISNKK 250

Query: 113 --VDELNKHLRISWLVPSMDR--------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
             +  +  H  I    P            +    + ++ +F       +D    +   D+
Sbjct: 251 DELSHIMDHFNIQVDNPVSIMNQETSKNFLLKQSAKDKYKFF-LKATQLD----QVSNDY 305

Query: 163 ERLMRGRNRLLTEGYFDSSW--CSSIEAQMAELGVK---------INIARVEMINALSSL 211
             +M   N+ +TE   D+      ++E ++ E+  K         +   R E+IN     
Sbjct: 306 REIML--NKGITEQKVDAQSTKLPALEYEVLEIEQKFKALTCLHDLTNKREELINQ---- 359

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
              + Q       K +    +  + ++    +++   ++    +  +  ++    G
Sbjct: 360 -SAWAQVAELEREKDTKRNEVQREENREPKFVEKIQQQEANVKKAEEKHAQIQSQG 414


>gi|257058663|ref|YP_003136551.1| ATPase-like protein [Cyanothece sp. PCC 8802]
 gi|256588829|gb|ACU99715.1| ATPase-like protein [Cyanothece sp. PCC 8802]
          Length = 381

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          ++ L I  FR +    L    +  + VG+N  GKT++LEAI   S
Sbjct: 2  LQSLKIQNFRCFEEFELQNLGRINLLVGENNSGKTSVLEAIQIFS 46


>gi|193212617|ref|YP_001998570.1| hypothetical protein Cpar_0962 [Chlorobaculum parvum NCIB 8327]
 gi|193086094|gb|ACF11370.1| conserved hypothetical protein [Chlorobaculum parvum NCIB 8327]
          Length = 632

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 128/384 (33%), Gaps = 68/384 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++  L I +++N     L FD      +FVG NG GK+N+ EA+  +     FR     
Sbjct: 1   MRLTSLYIGQYKNLRDFSLSFDGSSFIDVFVGKNGTGKSNLFEALIEI-----FRHLVEY 55

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D  ++     +     ++        +      D    R +    +   V+   + H   
Sbjct: 56  DREKVPCDFNYRIKFVIDEKTTEIAWNSGKLIIDGEERRTVGKTPMPDNVLIYYSGHNYA 115

Query: 123 SWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFERLMRG-RNRLLTE 175
                  D +       RRR        +R   +I P+++  ++    L+          
Sbjct: 116 V-----SDLVERYEKAFRRRLKGANIEDNRRFISIGPKYKSLLLAV--LLSQPETNKARR 168

Query: 176 GYFDSSWCSSIEAQMA--------------ELGVKINIA---R----------VEMINAL 208
              D    +++  ++               ELGV    A   R           E +N L
Sbjct: 169 FIMDKLGIATVGKELIVEFRRPDFARGRLKELGVDGIEAFDPRTHYWGTDGITREFLNKL 228

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
           +S I     K  F H  +   G    +F+ +    K+ +             + +TL   
Sbjct: 229 ASCI-----KGEFNHFDMYNRGKDSYRFNINLDIFKKRFKDDSVSEIFRQFDNLKTLGML 283

Query: 269 HRSDLIVDYCDKAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
               L + + +     I+H S G+ + V +    +   L  +      I LLDE  + L 
Sbjct: 284 ANITLRLKFSNGRSGFISHFSDGQFQSVYI---YSIIELFKD---RNCITLLDEPDSFLH 337

Query: 328 EDKRNALFRIVTDIGSQIF-MTGT 350
            + +    +       QIF +T T
Sbjct: 338 PEWQYQFLQ-------QIFEITDT 354


>gi|332664151|ref|YP_004446939.1| SMC domain-containing protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332332965|gb|AEE50066.1| SMC domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 420

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/371 (15%), Positives = 123/371 (33%), Gaps = 64/371 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++I+ L IS FR +  +++  F    T+  G NG GKT IL+ +  L             
Sbjct: 1   MRIRELTISNFRGFGETVKFPFSEHFTVIAGVNGRGKTAILDGLVLLFSY------LLPQ 54

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-----VVIRVVDELNK 118
           ++     +   +   V      A+IS+K           + I       V  ++  E++K
Sbjct: 55  ISEAKKQTKKVSETDVHLSASEANISVKTNCAGIPLDYFVTIYGVDRKVVPQKLYAEVSK 114

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE--RLMRGRNRLLTEG 176
            ++ ++          G           +V+     +      +   + +      +   
Sbjct: 115 TIKNAY----------GDPSRADDQAPLVVY-----YTTDRAGYRFPKALPQ----IVTS 155

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
               ++  ++  +M +    ++  RV +                    K+  + FL    
Sbjct: 156 GQAMAYNGALFNRMVDYKDFMSRYRVAL--------------TLTNDEKIKNSSFLGANA 201

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
            ++     E +     + +  ++  +          L V    + + +   S GE+ ++ 
Sbjct: 202 VKAINKAIEYFLDGFAELQVQENPLK----------LWVSKHGEKLDLRQLSDGERSLIA 251

Query: 297 VGI----FLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTG 349
           +       LA A   + N    A ++L+DE+  HL    +  +   +       Q   T 
Sbjct: 252 LICDLSRRLALANPALKNPLEGAGVVLIDELELHLHPKWQREIRDKLRKTFPNIQFITTT 311

Query: 350 TDKSVFDSLNE 360
               +  SLNE
Sbjct: 312 HSPFIIQSLNE 322


>gi|315611794|ref|ZP_07886716.1| conserved hypothetical protein [Streptococcus sanguinis ATCC
          49296]
 gi|315316209|gb|EFU64239.1| conserved hypothetical protein [Streptococcus sanguinis ATCC
          49296]
          Length = 880

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +KIK + I  F+N    R+  F    T+FVG NG GKT I +AI     G+
Sbjct: 1  MKIKKILIKNFKNIKGTRIIDFQENVTLFVGPNGFGKTTIFDAIELSLTGK 51


>gi|302419513|ref|XP_003007587.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261353238|gb|EEY15666.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 937

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 72/216 (33%), Gaps = 14/216 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
            I+ + +  F  Y            + +G NG GK++++ AI  L  G       R  S 
Sbjct: 75  AIRRVKVENFVTYERAEFFPGPNLNMVIGPNGTGKSSLVCAIC-LGLGYSPKHLGRAGSI 133

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119
            +  + G  +           +   +  ++++   +R+    ++N      + +  L + 
Sbjct: 134 KEFVKHGKATATIEIELQRRRQDRRNHVVQVQIDRERNSSRFRLNGKEATHKAIQGLMRD 193

Query: 120 LRISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           L I        +P    +            + +  A DP+  R   + + L +    L  
Sbjct: 194 LSIQVDNLCQFLPQDRVVEFAGCTPVDLLHETLRAAADPQMLRWQTELQELHKDHKELQQ 253

Query: 175 EGYFDSSWCSSIE--AQMAELGVKINIARVEMINAL 208
                +   +++E   Q  +  V     R E +  +
Sbjct: 254 RSGSHAETLANLENRQQAMQADVDRFREREEALVRI 289


>gi|114563633|ref|YP_751146.1| chromosome segregation protein SMC [Shewanella frigidimarina NCIMB
           400]
 gi|114334926|gb|ABI72308.1| chromosome segregation protein SMC [Shewanella frigidimarina NCIMB
           400]
          Length = 1144

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ FD   +  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPFDNALSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS +            F +   R+ G      +IS+K +   D S     +N 
Sbjct: 61  MTDVIFNGSSARKPISVAGVELVFENIQGRLTGQYASYQEISVKRQVNRD-SESSYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
              R  D +      + L P    I    ++ R   L                   R   
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISR---LIESKPQELRVFIEEAAGISRYKE 175

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            R                +     ELG +        ++ LS      +Q     + +  
Sbjct: 176 RRRETENRIRHTRENLERLNDIRVELGAQ--------LDKLSQQAKAALQYRELKNSERE 227

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           L   L     Q      +    +  +G        +T         ++    +   ++  
Sbjct: 228 LHSQLLVMRYQQLLQQTDRLDAETAEGELKSEALAKTA--QQGDTSVIQLKQQLAELSDA 285

Query: 288 ST 289
             
Sbjct: 286 EH 287



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 61/191 (31%), Gaps = 40/191 (20%)

Query: 184  SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
                 Q+ ++   I          L ++ +  +++      + +     D   ++    L
Sbjct: 924  DVWSQQLEKVKQNII--------RLGAINLAAIEEFESQRERKAYLDSQDDDLNKGLAIL 975

Query: 244  KEEYAKKLFDGRKM----------DSMS--------RRTLIGPHRSDLIVDY-------- 277
            ++   K   + R            D            R  +     DL+           
Sbjct: 976  EDAIRKIDKETRSRFKATFETVNHDLGLLFPKVFGGGRAYLALTGDDLLETGVTIMAQPP 1035

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A  RL       AP  +LDE+ A LD+       R+
Sbjct: 1036 GKKNSTIHLLSGGEKALTALSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVERFCRL 1090

Query: 338  VTDIGSQI-FM 347
            + ++   + F+
Sbjct: 1091 LKEMSQSVQFI 1101


>gi|298676000|ref|YP_003727750.1| chromosome segregation protein SMC [Methanohalobium evestigatum
           Z-7303]
 gi|298288988|gb|ADI74954.1| chromosome segregation protein SMC [Methanohalobium evestigatum
           Z-7303]
          Length = 1174

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 68/165 (41%), Gaps = 25/165 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK +    F+++   +++ F    T   G NG GK+NI++ I F   LS  R  R   
Sbjct: 1   MYIKEIEFLNFKSFGKKVKIPFFDDFTTISGPNGSGKSNIIDGILFALGLSNSRTMRAEK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-----------INDVV 109
             D+      S    +A+V+     +D  + +E  +    R ++            N   
Sbjct: 61  LTDLIYNPDSSNKPQYAQVKIRFDNSDNEMPVEADEVEITRKIKETGSGYYSYFYFNGKS 120

Query: 110 IRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145
           +  + +++ +L  + + P          + +I +   +ERR+ +D
Sbjct: 121 V-SLKDIHNYLAKAKVTPEGYNVVMQGDVTQIITMTPVERRKIID 164


>gi|260663570|ref|ZP_05864460.1| chromosome segregation protein SMC [Lactobacillus fermentum
           28-3-CHN]
 gi|260552111|gb|EEX25164.1| chromosome segregation protein SMC [Lactobacillus fermentum
           28-3-CHN]
          Length = 1187

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++  L I  F+++A    + F    T  +G NG GK+NI+EAI ++      +  R   
Sbjct: 1   MRLLSLEIEGFKSFADKTVIDFRPGMTGIIGPNGSGKSNIIEAIRWVMGEQSAKTLRGDK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
            ADV   G+              ++  +   D      T   R  R       +ND  +R
Sbjct: 61  MADVIFNGAADRKPLNRAQVKITLDNSDHYLDSEFTELTVTRRLYRNGDSEYLVNDRPVR 120

Query: 112 VVDEL-----NKHLRISWLVPSMDR---IFSGLSMERRRFLD 145
           + D +     +   R S+ + S  R   IF+G   +RR  ++
Sbjct: 121 LKDIVDLFIDSGIGRESFSIISQGRVAAIFNGKPTDRREVIE 162


>gi|293333792|ref|NP_001169562.1| hypothetical protein LOC100383441 [Zea mays]
 gi|224030099|gb|ACN34125.1| unknown [Zea mays]
          Length = 1040

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 86/265 (32%), Gaps = 28/265 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I  + +  F  ++SL +  D       G NG GK+ IL A+      R     R AS  D
Sbjct: 6   ISRIRLENFMCHSSLHIELDKHVNFITGQNGSGKSAILTALCVAFGCRAKNTQRAASLKD 65

Query: 64  VTRIGSP-SFFSTFARVEGME----GLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
             + G   +  +      G +     +   +I LE R   S     + D   R V     
Sbjct: 66  FIKTGCSYAAITVDINNHGEDAFKPEVYGDTIILERRITESASSTVLKDQHGRKVAHRKD 125

Query: 119 HLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
            L           I            + R FL       + + + +      L++  N L
Sbjct: 126 DLNEII---EHFNIEVENPCVIMSQDKSREFLHSG----NDKDKFKFFFKATLLQQVNDL 178

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           L     + +  +SI  ++      I  A  E ++ +   I      E   H   +L   L
Sbjct: 179 LATIRDNLNIAASIVEELE---ASIRPALRE-LDEIQEKIKNMEHIEEIAHEIENLNKKL 234

Query: 233 DGKFDQSFCAL---KEEYAKKLFDG 254
              +          ++EY +KL + 
Sbjct: 235 AWVWVYDVDKKIGGQQEYLEKLKER 259


>gi|146304004|ref|YP_001191320.1| SMC domain-containing protein [Metallosphaera sedula DSM 5348]
 gi|145702254|gb|ABP95396.1| SMC domain protein [Metallosphaera sedula DSM 5348]
          Length = 359

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 17/119 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA--DV 64
           I  + I  F+++  + L         VG NG GKTN+++A S L      R +S +    
Sbjct: 2   ITSIKIKNFKSFRDVTLNL--GKISVVGPNGSGKTNLVDAFSLLKQV--LRPSSLSPYPF 57

Query: 65  TRIGS--------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            R G                  +EG     +    LE   + S     +    +R+ D 
Sbjct: 58  ARWGEYKNVVFMQDPGLDISFELEGKHKGMEYRYFLEINGEHS---FTVKREEVRLGDR 113


>gi|227515695|ref|ZP_03945744.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus fermentum ATCC 14931]
 gi|227085943|gb|EEI21255.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus fermentum ATCC 14931]
          Length = 1187

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++  L I  F+++A    + F    T  +G NG GK+NI+EAI ++      +  R   
Sbjct: 1   MRLLSLEIEGFKSFADKTVIDFRPGMTGIIGPNGSGKSNIIEAIRWVMGEQSAKTLRGDK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
            ADV   G+              ++  +   D      T   R  R       +ND  +R
Sbjct: 61  MADVIFNGAADRKPLNRAQVKITLDNSDHYLDSEFTELTVTRRLYRNGDSEYLVNDRPVR 120

Query: 112 VVDEL-----NKHLRISWLVPSMDR---IFSGLSMERRRFLD 145
           + D +     +   R S+ + S  R   IF+G   +RR  ++
Sbjct: 121 LKDIVDLFIDSGIGRESFSIISQGRVAAIFNGKPTDRREVIE 162


>gi|328853663|gb|EGG02800.1| hypothetical protein MELLADRAFT_49722 [Melampsora larici-populina
           98AG31]
          Length = 378

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 18/156 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-----RRASY 61
           I  L+ + F  Y  +   F +   + +G NG GK+  + A++ L  G        R    
Sbjct: 130 IVRLSATNFMTYTEVEFHFGSHLNMIIGPNGTGKSAFMCALA-LGLGYSPATVLQRVNEV 188

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119
               + G+    S    ++G  G  +I IKL    + S R  +IN        V E+ + 
Sbjct: 189 KLYVKNGTNEG-SVEIELKGKPGEENIVIKLHLNVETSSRVFEINGKRSTHTKVQEIIRS 247

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
             I       D +   +  ER R       A+DP H
Sbjct: 248 FNIQV-----DNLCCFIPQERLR----EFAAMDPIH 274


>gi|314937655|ref|ZP_07844981.1| segregation protein SMC [Enterococcus faecium TX0133a04]
 gi|314942846|ref|ZP_07849659.1| segregation protein SMC [Enterococcus faecium TX0133C]
 gi|314950936|ref|ZP_07854005.1| segregation protein SMC [Enterococcus faecium TX0133A]
 gi|314991416|ref|ZP_07856893.1| segregation protein SMC [Enterococcus faecium TX0133B]
 gi|314995063|ref|ZP_07860183.1| segregation protein SMC [Enterococcus faecium TX0133a01]
 gi|313590789|gb|EFR69634.1| segregation protein SMC [Enterococcus faecium TX0133a01]
 gi|313593896|gb|EFR72741.1| segregation protein SMC [Enterococcus faecium TX0133B]
 gi|313596945|gb|EFR75790.1| segregation protein SMC [Enterococcus faecium TX0133A]
 gi|313598318|gb|EFR77163.1| segregation protein SMC [Enterococcus faecium TX0133C]
 gi|313643032|gb|EFS07612.1| segregation protein SMC [Enterococcus faecium TX0133a04]
          Length = 1191

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 100/285 (35%), Gaps = 38/285 (13%)

Query: 8   KFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYAD 63
           K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R     D
Sbjct: 2   KRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGKMPD 61

Query: 64  VTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDELNKH 119
           +   GS +      A V  +   +D  + LE  +    R  +        I       K 
Sbjct: 62  IIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCRLKD 121

Query: 120 LRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
           ++  +L   +             + IFS    +RR   +     +   +++R    E+ +
Sbjct: 122 IQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAEQKL 179

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLIMEY 215
                 L+           +E Q+  L  + + A  E +             + + I   
Sbjct: 180 FETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEIKTA 235

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
            +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 236 KKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 280


>gi|312135007|ref|YP_004002345.1| chromosome segregation protein smc [Caldicellulosiruptor owensensis
           OL]
 gi|311775058|gb|ADQ04545.1| chromosome segregation protein SMC [Caldicellulosiruptor owensensis
           OL]
          Length = 1177

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/298 (16%), Positives = 102/298 (34%), Gaps = 35/298 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + IK+L I  F+++    R+ F    T  VG NG GK+NI +AI +    +     R A 
Sbjct: 1   MYIKWLEIYGFKSFCEKTRIEFQKGITAIVGPNGCGKSNITDAIRWALGEQSLKILRAAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   G+       F       +   G+  I  +      R  R       IN +  R
Sbjct: 61  QEDLIFAGTEKRKSQGFAEVSICFDNSNGVLPIDYQEVVVTRRLFRSGESEFFINKIPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I +   ++R R  +        ++R+   + E
Sbjct: 121 LKDVYELFLDSGLGKDGYSIISQGRVDEIINARPVDRYRIFEEACGITKYKYRKE--ETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R ++                  ++  M EL  ++   + + +    + +    + ++   
Sbjct: 179 RKLK----------TTEENIQRLQDVMFELSTQLEEIKPD-VQKAKTYLQINQKLQSLKK 227

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIGPHRSDLIVDYCDK 280
            K      L G+        +++  ++L         + +       + DL+  + +K
Sbjct: 228 EKYVYEYNLTGRRYNDLLLKEKQLNEELERLIHLRRELEKSINQSESQIDLLTQHIEK 285



 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 60/171 (35%), Gaps = 35/171 (20%)

Query: 195  VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
             K    R++ +      + +    +    +   L   +   F ++F  +K  +++  F+ 
Sbjct: 989  EKRLQERMQFLQKQIEDLQKTT--DELKRLISHLEKNMKEIFLENFEKIKSLFSEIFFE- 1045

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAI--------------TIAHGSTGEQKVVLVGIF 300
                      L G    DL +   D  +               I   S GE+ +V + + 
Sbjct: 1046 ----------LFGGGSCDLKLIGQDGELGVDIDVKPPGKKLQNINLLSGGEKALVAIALL 1095

Query: 301  LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMT 348
             A       T   + + +LDEI + LDE       + + ++ SQ   I +T
Sbjct: 1096 FAFL-----TFKGSLLCILDEIDSSLDEVNVQRFAQYIKNLNSQSQIIIVT 1141


>gi|260170441|ref|ZP_05756853.1| hypothetical protein BacD2_01103 [Bacteroides sp. D2]
 gi|315918795|ref|ZP_07915035.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692670|gb|EFS29505.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 589

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++I  ++I  FR   + R+ FD   TIFVG N  GKT+ + AI +   G+
Sbjct: 1  MRINHVHIRNFRKLRNCRIDFDENQTIFVGANNSGKTSAMSAIIWFLKGK 50


>gi|59711735|ref|YP_204511.1| hypothetical protein VF_1128 [Vibrio fischeri ES114]
 gi|59479836|gb|AAW85623.1| hypothetical protein VF_1128 [Vibrio fischeri ES114]
          Length = 629

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 16/105 (15%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF---------LSPGR 54
           +I++  + +  F+++  L +  + +  I +G+N  GK+ I E I           L+  +
Sbjct: 2   QIRLSEIQLKNFKSFEDLTISPNNRFNIIIGENSAGKSTIFEGIHLWEKCYEAFILASRK 61

Query: 55  GF--RRASYADVTRIGSPSFFSTFARVE-----GMEGLADISIKL 92
           GF   R S +         F    +  +     G    A+I++ L
Sbjct: 62  GFYKVRGSTSRYVNYQELDFLRLTSDNDLFFHSGRTRNAEITVTL 106


>gi|317013811|gb|ADU81247.1| hypothetical protein HPGAM_02005 [Helicobacter pylori
          Gambia94/24]
          Length = 375

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+N+ + ++    +  I  G N  GK+N+LEA+ +L  G+ 
Sbjct: 2  IQSVRIKNFKNFKNTQIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49


>gi|224095847|ref|XP_002187833.1| PREDICTED: structural maintenance of chromosomes 1B [Taeniopygia
           guttata]
          Length = 1238

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 114/307 (37%), Gaps = 27/307 (8%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K L + +F+++     +    +    +G NG GK+NI++A+SF+   +    R  S  +
Sbjct: 4   LKVLVVKDFKSWRGQQVIGPFMRFNCIIGPNGSGKSNIMDAVSFVLCEKTANLRVKSVRE 63

Query: 64  VTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHL 120
           +   G+      S+ A V+ +    D   K  +R  R      + ND  +     +++  
Sbjct: 64  LI-HGAHVGKPVSSTASVKIVYCEEDGEEKTFSRVIRGSCSEFLFNDKSVSRSAYISELE 122

Query: 121 RISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
           +I  LV + + +               +R +  +++  + +  +       ++ M    +
Sbjct: 123 KIGILVKARNCLIFQGTVESIAMKKPKDRTQLFEQISNSWE--YAEDYEQKKKKMEQAEQ 180

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                Y      ++   Q A++  +       +I  L    ++    + + + K     F
Sbjct: 181 DAQFNYNKKKSVAAERKQ-AKIEKEEAEHYQMLIKELDEERIQLQLFQLYHNEK--QISF 237

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMS-RRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           L    D+      E Y KK       DS   ++ + G    D    + +K +     S  
Sbjct: 238 LKNNLDE---KNMEAYTKKEALSTAEDSFKVKKKMFGILNRDQQ--HMEKEMKTLEASLV 292

Query: 291 EQKVVLV 297
           +Q+ + +
Sbjct: 293 QQRALYI 299


>gi|193202684|ref|NP_001040658.2| High Incidence of Males (increased X chromosome loss) family member
           (him-1) [Caenorhabditis elegans]
 gi|163914651|gb|AAK21378.3| High incidence of males (increased x chromosome loss) protein 1,
           isoform a [Caenorhabditis elegans]
          Length = 1262

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 40/284 (14%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63
           +  L I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R   YAD
Sbjct: 16  LHTLEIENFKSYKGKHTIGPFTRFTAIIGPNGSGKSNLMDAISFVLGEKPSSLRVRKYAD 75

Query: 64  VTRIGSP--SFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHL 120
           +   G+P     +   RV      +D  +K  TR  +       ++   +       +  
Sbjct: 76  LI-HGAPINKPVAKKCRVTMNYKYSDGKVKAFTRGVNNGTSEHLLDGQTVTSAAYSQEME 134

Query: 121 RISWLVPSMDRIFSGL---------SMERRRFLDRMVFAID--PRHRRRMIDFERL---- 165
            I+  + + + +               ER +  + +  + +    + R  ++  +     
Sbjct: 135 SINIFIKARNFLVYQGAIENIAMKTPKERTQLFEELSRSHEFQAEYERLKVEMTKAEDDT 194

Query: 166 ---------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL---SSLIM 213
                    +    R       ++    +++ ++A     +       ++ L      I 
Sbjct: 195 QHNMNKRRGIAQEKREAKMEKDEAEKYQTMKNELAAKSTML------FLHQLFHCERTID 248

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           E  ++ N     ++       K +    A+ +E+ K L + +KM
Sbjct: 249 ESKEEINAQKKTIASLEATRSKEEAKIAAVHQEHRKALREVQKM 292


>gi|328354661|emb|CCA41058.1| Structural maintenance of chromosomes protein 2 [Pichia pastoris
           CBS 7435]
          Length = 1168

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D+Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVEELIIDGFKSYATRTVISGWDSQFNAITGLNGSGKSNILDAICFVLGISSMTTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E L  IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNSDTDKSPIGFEKLPSISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    L     +   + + + +    
Sbjct: 120 HRAQQQTVLQLFQSVQLNINNPNFLIMQG 148


>gi|184155713|ref|YP_001844053.1| chromosome segregation protein [Lactobacillus fermentum IFO 3956]
 gi|183227057|dbj|BAG27573.1| chromosome segregation protein [Lactobacillus fermentum IFO 3956]
          Length = 1187

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++  L I  F+++A    + F    T  +G NG GK+NI+EAI ++      +  R   
Sbjct: 1   MRLLSLEIEGFKSFADKTVIDFRPGMTGIIGPNGSGKSNIIEAIRWVMGEQSAKTLRGDK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
            ADV   G+              ++  +   D      T   R  R       +ND  +R
Sbjct: 61  MADVIFNGAADRKPLNRAQVKITLDNSDHYLDSEFTELTVTRRLYRNGDSEYLVNDRPVR 120

Query: 112 VVDEL-----NKHLRISWLVPSMDR---IFSGLSMERRRFLD 145
           + D +     +   R S+ + S  R   IF+G   +RR  ++
Sbjct: 121 LKDIVDLFIDSGIGRESFSIISQGRVAAIFNGKPTDRREVIE 162


>gi|117619753|ref|YP_855768.1| chromosome segregation protein SMC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561160|gb|ABK38108.1| chromosome segregation protein SMC [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1124

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 65/369 (17%), Positives = 121/369 (32%), Gaps = 62/369 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    R+  +A  T  VG NG GK+N+++A+ ++   S  R  R  +
Sbjct: 1   MRLKLIKLAGFKSFVEPTRIELNADMTAVVGPNGCGKSNVIDAVRWVLGESSARHLRGEN 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS +            F +   RV G  G   +IS++ E   D S    QIN 
Sbjct: 61  MTDVIFNGSVNRSAHGRASVELVFDNPHNRVPGEFGRFTEISVRREVLRDGSN-HYQING 119

Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
              R  D         L           ++ R+      + + F++        R++ R 
Sbjct: 120 QKCRRKDVTDLFLGTGLGPRSYAIIEQGTVSRLVESRPADLKLFMEEAAG--VSRYKERR 177

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
            + E+ +R     L           S    +          R + +   S      +   
Sbjct: 178 RETEQRIRHTQENLERLGDIRGELGSRLEHLKAQAE--TAERYKQLKNRSRAARAELIGS 235

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
               ++  L         ++  A  E+    L   R  D     TL              
Sbjct: 236 ELWALETRL------GEAKTELAQTEQALAALDAKRTADEGRHVTL----------SVAR 279

Query: 280 KAITIAHGSTGEQKVVL---VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
           +       S  +Q++ L       L   +L  +  G               + +R AL  
Sbjct: 280 QEAQAEQASR-QQQIFLGGQAIARLEQQQLHQSELGRDW------------QARRQALGE 326

Query: 337 IVTDIGSQI 345
            +  + SQ+
Sbjct: 327 RIEGLKSQL 335



 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TIA  S GE+ +  + +  A  RL       AP  LLDE+ A LDE        +
Sbjct: 1016 GKKNATIALLSGGEKALTALALVFAIFRL-----NPAPFCLLDEVDAPLDEVNVGRFCSL 1070

Query: 338  VTDIGSQI 345
            V ++ S +
Sbjct: 1071 VKEMSSTV 1078


>gi|150388685|ref|YP_001318734.1| SMC domain-containing protein [Alkaliphilus metalliredigens QYMF]
 gi|149948547|gb|ABR47075.1| SMC domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 438

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 134/373 (35%), Gaps = 63/373 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +K++++ +  ++N   + + F+ Q     F+G+NG GK+NILE I+ +        +   
Sbjct: 1   MKMEYIYVHGYKNLNDIEIYFEPQSSVNSFIGNNGSGKSNILEVIAII------FSSVLD 54

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           DV    +P  F    +    + +      +E R+   +  +  N   +   D       +
Sbjct: 55  DV----NPDGFEFCLKYTIDDYI------IEIRNTEKLLEILKNGEKVSKKD-------V 97

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           + + P    ++     +R + L   +  ID R  + +   E +     + LT    D   
Sbjct: 98  NQIFPKAIFLYYAGETKRLKQLSDEI--IDKRFEKTLKKDEEI---AFKFLTYLSVDDFG 152

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK---------ENFPHIKLSLTGFLD 233
            S +   +       NI ++  I  +   I   ++K         +NF +   ++   L+
Sbjct: 153 PSLLSNHIFRNDTYYNICKLVDIKDICPPITINLKKPSWSKNGKADNFWNAVGAVAKELN 212

Query: 234 GKFDQSFCALKEEYAKKL----FDGRKMDSMSRRTLIGPHR--------SDLIVDYCDKA 281
               +   ++ +    K+     +  K DS+    L    +          L  +     
Sbjct: 213 TFAQKGTYSIIDNNRSKIVIEDIEKLKDDSIGALGLFTIFKMLAQADVLDGLEFEVVKGN 272

Query: 282 ITIAH--GSTGEQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNALFRIV 338
              ++   S GE+        L+    I   T     + LLDE  ++L  + +     IV
Sbjct: 273 DKFSYTGLSEGEK-------QLSQLLSILEITKEYKALFLLDEFDSYLHPNWQRKFVDIV 325

Query: 339 TDIG--SQIFMTG 349
            +I    QI  T 
Sbjct: 326 NEINIRGQILFTT 338


>gi|313672426|ref|YP_004050537.1| chromosome segregation protein smc [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939182|gb|ADR18374.1| chromosome segregation protein SMC [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 1118

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 90/282 (31%), Gaps = 30/282 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +K K L I  F+++     + F    T  VG NG GK+NIL+AI ++      +  R + 
Sbjct: 1   MKFKKLIIQGFKSFVDKTVIDFPDGITCIVGPNGSGKSNILDAIRWILGEQNPKELRGSD 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             D+   GS      +  S    +  +           ++I I  +   D   R   IN+
Sbjct: 61  MDDIIFAGSEKRSQSNVASVTLVISDISEELAGKWGSFSEIEISRKYYRD-GEREYFINN 119

Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
              ++ D         L            +++I S    E R F D        R + + 
Sbjct: 120 KRCKLKDIREIFFDTGLGARSISIIEQGKVEKIISASPEEIRVFFDEAAGIT--RFKEKK 177

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA--LSSLIMEYVQ 217
            D E+ +      L       S        +     K+   R   I    L   I  Y  
Sbjct: 178 KDAEKRLEQAKENLNRVKDIISEVKEKYDALYLQVEKLKNYRELKIRRDLLDKTIYAYNY 237

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
             +    +  L    + +   S    + E  KK     K + 
Sbjct: 238 HLSLAQYQEFLKKNDEIQIKLSSSIYEYENLKKQEQNLKDEI 279


>gi|83646206|ref|YP_434641.1| ATPase [Hahella chejuensis KCTC 2396]
 gi|83634249|gb|ABC30216.1| predicted ATPase [Hahella chejuensis KCTC 2396]
          Length = 386

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +K ++I  F +Y      +       I +G NG GKTN++EAI  L
Sbjct: 1  MLLKSISIKNFLSYGEKEQYISLQP-LNIIIGPNGSGKTNLIEAIELL 47


>gi|314948018|ref|ZP_07851422.1| segregation protein SMC [Enterococcus faecium TX0082]
 gi|313645616|gb|EFS10196.1| segregation protein SMC [Enterococcus faecium TX0082]
          Length = 1191

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/285 (17%), Positives = 100/285 (35%), Gaps = 38/285 (13%)

Query: 8   KFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYAD 63
           K + I+ F+++A    + F+   T  VG NG GK+NI EAI ++      +  R     D
Sbjct: 2   KRIEIAGFKSFADKTVIDFENSVTAVVGPNGSGKSNITEAIRWVLGEQSAKSLRGGKMPD 61

Query: 64  VTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDELNKH 119
           +   GS +      A V  +   +D  + LE  +    R  +        I       K 
Sbjct: 62  IIFAGSDTRKQLNIAEVTVILDNSDHYLPLEYNEISVTRRYRRTGESEFFINKQSCRLKD 121

Query: 120 LRISWLVPSM-------------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
           ++  +L   +             + IFS    +RR   +     +   +++R    E+ +
Sbjct: 122 IQELFLDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEAAGVLK--YKQRKKKAEQKL 179

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-----------ALSSLIMEY 215
                 L+           +E Q+  L  + + A  E +             + + I   
Sbjct: 180 FETEDNLSRVQ---DIIHELEEQLTPLAAQ-SEAAKEFLRLKETLTQTDVSLMVAEIKTA 235

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
            +  +    +L+      GK  +S    +   AK+  +  + D +
Sbjct: 236 KKDWDNKQAQLAKFNLELGKLSESIQEQESILAKQRKENAQADRL 280


>gi|310791210|gb|EFQ26739.1| RecF/RecN/SMC N terminal domain-containing protein [Glomerella
           graminicola M1.001]
          Length = 1118

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I+ + +  F  Y            + +G NG GK++++ AI   L        R  +  
Sbjct: 75  AIRRVKVENFVTYEMAEFFPGPNLNMVIGPNGTGKSSLVCAICLGLGFSPKHLGRAGNVK 134

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHL 120
           +  + G  S           +      ++++   +R+ +   +N      + +  L + L
Sbjct: 135 EFVKHGKSSAIIEIELQRRPQDRHHHVVRVQIDRERNSQKWWLNGKDTTHKTIQILMRDL 194

Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           +I        +P   R+    S      L   + A  P+         + +    + L  
Sbjct: 195 KIQVDNLCQFLPQD-RVVEFASATPVDLLHETLRAAAPQEMLDWQKSLQDLHNDQKELQR 253

Query: 176 GYFDSS-WCSSIEAQMAELGVKINIARVEMINALSSLIME 214
           G   ++     +E +  +  ++ ++ R+  I      I +
Sbjct: 254 GSDSAADHLKQLEDR--QNDMQQDVDRLREIEEAQRQIAD 291


>gi|258569066|ref|XP_002585277.1| hypothetical protein UREG_05966 [Uncinocarpus reesii 1704]
 gi|237906723|gb|EEP81124.1| hypothetical protein UREG_05966 [Uncinocarpus reesii 1704]
          Length = 1140

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 11/134 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + +++F  Y+S  +    +  + +G NG GK+ ++ AI   L  G     R    A
Sbjct: 92  AIVRIKLTDFVTYSSAEIRPGPKLNMVIGPNGTGKSTLVCAICLGLGEGPQHLGRARDAA 151

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHL 120
           +  + G P   +    +    G  +  +    + + +     IN   +  + V +  + L
Sbjct: 152 EFIKNGRPEA-TIEIELASPIGKRNTVVTRIIKRNGNKSLFAINGKQVSGKKVRQFARSL 210

Query: 121 RISW-----LVPSM 129
            I        +P  
Sbjct: 211 SIQINNLCQFLPQD 224


>gi|157692923|ref|YP_001487385.1| DNA repair protein RecN [Bacillus pumilus SAFR-032]
 gi|157681681|gb|ABV62825.1| DNA repair protein RecN [Bacillus pumilus SAFR-032]
          Length = 578

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 82/256 (32%), Gaps = 37/256 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L + F+   T+  G+ G GK+ +++A+S L  GRG      ++  R
Sbjct: 2   LAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRG-----SSEFVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G                         +G++   ++ I     ++      +IN  ++  
Sbjct: 57  YGEKKAELEGLFLVPAADHPVFALCEEQGIDASDEMMILRRDMNNNGKSICRINGKLV-T 115

Query: 113 VDELNKHLRISW-LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
           +  L +  R+   +    D             LD+            +  ++        
Sbjct: 116 ISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAE---EIAPALSQYQEAYEQ--- 169

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
             T+        S  E +M          R++++       +E  Q E     KL     
Sbjct: 170 -YTKTAQKLKQLSENEQEMV--------HRLDLLQ-FQLEEIEAAQLEPGEDEKLQEERH 219

Query: 232 LDGKFDQSFCALKEEY 247
               +++ F +L+  Y
Sbjct: 220 QISNYEKIFSSLQNAY 235


>gi|15645693|ref|NP_207870.1| hypothetical protein HP1079 [Helicobacter pylori 26695]
 gi|2314229|gb|AAD08125.1| predicted coding region HP1079 [Helicobacter pylori 26695]
          Length = 370

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+N+ + ++    +  I  G N  GK+N+LEA+ +L  G+ 
Sbjct: 2  IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49


>gi|150864658|ref|XP_001383583.2| Protein involved in recombination repair [Scheffersomyces stipitis
           CBS 6054]
 gi|149385914|gb|ABN65554.2| Protein involved in recombination repair [Scheffersomyces stipitis
           CBS 6054]
          Length = 1063

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 4/112 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +++  F  + S  L    Q    +G NG GK+ IL  IS     +     R  S   
Sbjct: 42  IERISLKNFMCHDSFELELGPQINFIIGRNGSGKSAILTGISVGLGAKASDTNRGTSIKS 101

Query: 64  VTRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             + G  +   T   + EG E             +R ++ +  N   IR   
Sbjct: 102 FIKDGKSTARVTIVFLNEGPEAYRPEEFGKRIIIERKLQRIGGNTYAIRSHS 153


>gi|109946668|ref|YP_663896.1| hypothetical protein Hac_0033 [Helicobacter acinonychis str.
          Sheeba]
 gi|109713889|emb|CAJ98897.1| conserved hypothetical protein fragment 1 [Helicobacter
          acinonychis str. Sheeba]
          Length = 128

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          IK + I  ++N+  L++        F G N +GKTN+LEA+  
Sbjct: 2  IKSVEIENYKNFKHLKMESFKPINFFTGQNDMGKTNLLEALYI 44


>gi|297806795|ref|XP_002871281.1| structural maintenance of chromosomes family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297317118|gb|EFH47540.1| structural maintenance of chromosomes family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 1063

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 78/273 (28%), Gaps = 41/273 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I  + +  F  +++L + F        G NG GK+ IL A+      R     R A+  D
Sbjct: 22  IVRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAATLKD 81

Query: 64  VTRIGSPSFFSTFARVEGM----------------EGLADISIKLETRDDRSVRCLQIND 107
             + G  S+      ++                  E     S  L    D   R +    
Sbjct: 82  FIKNGC-SYALVHVELKNQGEDAFKPEIYGDTLIIERRISDSTSLTVLKDHQGRKISSRR 140

Query: 108 VVIRVVDELNKH---LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
             +R + E            +     R F     ++ +F             +       
Sbjct: 141 EELRQLVEHYNIDVENPCVIMSQDKSREFLHSGNDKDKF---------KFFYKA-----T 186

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L++  + LL          +++  +M +    I       I+ L   I      E     
Sbjct: 187 LLQQVDDLLQSIGTKLKSANALMDEMEKTIKPIQKE----ISELLEKIKNMEHVEEITQQ 242

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            L L   L   +        +E  +K+   R+ 
Sbjct: 243 VLHLKNKLAWSWVYDVNRQLKEQNEKIVKLRER 275


>gi|148654508|ref|YP_001274713.1| chromosome segregation protein SMC [Roseiflexus sp. RS-1]
 gi|148566618|gb|ABQ88763.1| condensin subunit Smc [Roseiflexus sp. RS-1]
          Length = 1201

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 108/316 (34%), Gaps = 26/316 (8%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + ++ L I  F+ +A      F    T  VG NG GK+N+++AI ++         R   
Sbjct: 1   MYLRRLEIQGFKTFAGHTLFEFQPGITAVVGPNGSGKSNLVDAIRWVLGEQHPGALRCKR 60

Query: 61  YADVTRIGS-----PSFFSTFARVEGMEGLAD---ISIKLETRDDRSV-RCLQINDVVIR 111
             D+   G        F      ++  + L       + +  R  RS  +   IN   +R
Sbjct: 61  TEDLIFSGGGRRAPAGFAEVSLTIDNSDRLLSAPYGEVTITRRATRSGDQEYFINRQRVR 120

Query: 112 VVD--ELNKHLRISWLVPS---MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
           + D  E+   +  ++ + +   +D   +   +ERRR  +    A    + +R  D ER +
Sbjct: 121 LRDVQEIAAPINGAYAIINQGLVDAALNLRPLERRRLFED--AAAISVYEQRRTDAERRL 178

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF-PHIK 225
           R  N  +       +        +          R +++  L  L+  Y  +       +
Sbjct: 179 RETNANVARCSDILAELEPRLRSLKRQAALARSHR-DLMAELHELLQTYYVRLWLTAQTE 237

Query: 226 LSLTGFLDGKFDQSFCALKEEYAK---KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
            + T         +    + E       L   R+    + R  IG   ++    +     
Sbjct: 238 CAATEQAAQTLAATLAVRQAEMTAVSTDLLHLRER-IRAIRDRIGSLHAESSALHARAGS 296

Query: 283 TIAHGSTGEQKVVLVG 298
                + G++++  + 
Sbjct: 297 VQRALAVGQERLAALS 312


>gi|49481883|gb|AAT66653.1| DNA repair and genetic recombination protein [Bacillus caldovelox]
          Length = 573

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G+       A +EG+  L D           + ++  D                 +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   V+ ++   L           +           LD             +  + R 
Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGLXA---AEALARY-RA 165

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  R   L          S  E QMA         R++++       +E    E     +
Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + AL++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|323456696|gb|EGB12562.1| hypothetical protein AURANDRAFT_70503 [Aureococcus
          anophagefferens]
          Length = 1114

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
          M +R +I+ L I  F+++    ++     T  VG NG GK+N+++A+SF+     R  R 
Sbjct: 1  MASRGRIRSLEIENFKSFGGKNVIAFRGFTSVVGPNGAGKSNLMDAVSFVLGIHSRHLRS 60

Query: 59 ASYADVTRIG 68
          +   ++   G
Sbjct: 61 SKLIELLHKG 70


>gi|284801753|ref|YP_003413618.1| DNA repair and genetic recombination [Listeria monocytogenes
           08-5578]
 gi|284994895|ref|YP_003416663.1| DNA repair and genetic recombination [Listeria monocytogenes
           08-5923]
 gi|284057315|gb|ADB68256.1| DNA repair and genetic recombination [Listeria monocytogenes
           08-5578]
 gi|284060362|gb|ADB71301.1| DNA repair and genetic recombination [Listeria monocytogenes
           08-5923]
          Length = 563

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG      AD  R
Sbjct: 2   LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G               +     A +E     +D  + LE    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    +     +++    +++ + + 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKLALTKYQTNFKEYQTIEKE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197


>gi|300707231|ref|XP_002995833.1| hypothetical protein NCER_101178 [Nosema ceranae BRL01]
 gi|239605055|gb|EEQ82162.1| hypothetical protein NCER_101178 [Nosema ceranae BRL01]
          Length = 972

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 5/136 (3%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + I+ + I  F+++ S   +    + TI +G NG GK+NI+ AI  +       R    D
Sbjct: 1   MHIQKIEIENFKSFKSFTSIDLSPKFTIIIGKNGSGKSNIIHAIRTVICCEKLSREDRLD 60

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           +         +  S F         +  +I ++   +       +N+ +I   D L   L
Sbjct: 61  LIHENLFEDTTSISLFIDNSDKRLDSQKNIVIKRCINAEKDEYFLNEKLISRKD-LKGFL 119

Query: 121 RISWLVPSMDRIFSGL 136
               +  S   I    
Sbjct: 120 ENGGISSSSYFIVQQG 135



 Score = 36.0 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIF 346
           S G++ +V + + L+           +P  + DEI A+LD++ R  L  + + I   Q  
Sbjct: 876 SGGQKTMVSIALILS-----IQKVDPSPFYIFDEIDANLDQEGRLRLSNLFSSIKDVQFI 930

Query: 347 MTGTDKSVFD 356
           +T   + + +
Sbjct: 931 ITTFREELLN 940


>gi|269120738|ref|YP_003308915.1| chromosome segregation protein SMC [Sebaldella termitidis ATCC
           33386]
 gi|268614616|gb|ACZ08984.1| chromosome segregation protein SMC [Sebaldella termitidis ATCC
           33386]
          Length = 1175

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L ++ F+++A    + F    T  VG NG GK+NIL+AI   L     +  R   
Sbjct: 1   MYLKALELNGFKSFAEKTVIDFTNGITSIVGPNGSGKSNILDAILWVLGEQSYKSIRAKD 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
            +DV   G  +    + A V  +   +D  + ++  D +  R +         IN+  IR
Sbjct: 61  SSDVIFSGGKNRKAKSVAEVSLIIDNSDRYLDIDFTDLKITRRIYRSGENEYLINNRKIR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|166031774|ref|ZP_02234603.1| hypothetical protein DORFOR_01475 [Dorea formicigenerans ATCC
           27755]
 gi|166028227|gb|EDR46984.1| hypothetical protein DORFOR_01475 [Dorea formicigenerans ATCC
           27755]
          Length = 1186

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++A+ ++  F    T  VG NG GK+N+ +A+ ++      +  R  +
Sbjct: 1   MYLKSIEVQGFKSFANKIKFDFHNGITGIVGPNGSGKSNVADAVRWVLGEQRVKQLRGGT 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    I  +  T   +  R       IN    R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNSDHKLAIDFEEVTVTRKLYRSGESEYLINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          +D+I SG   ERR   D
Sbjct: 121 LKDINELFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFD 162


>gi|162453294|ref|YP_001615661.1| hypothetical protein sce5018 [Sorangium cellulosum 'So ce 56']
 gi|161163876|emb|CAN95181.1| hypothetical protein sce5018 [Sorangium cellulosum 'So ce 56']
          Length = 361

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/382 (14%), Positives = 111/382 (29%), Gaps = 94/382 (24%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA------- 59
           I  +++ +F+ +    +    Q T+ VG NG GKT++LEA+         R +       
Sbjct: 2   ITSVHLHDFKGHRDSTVPLG-QFTVLVGPNGSGKTSVLEALWAQGQVPNCRPSQFFVEKW 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           S  D+ R G+       +   G+      S  LE      V    I         +L   
Sbjct: 61  SIGDLVRRGAQGPSVLIS--HGISNALPWSSWLELNSSSPVAFRWIQGKSDNQY-QLTDS 117

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             +S  VP                + + +  +                            
Sbjct: 118 QTLSVSVPQ---------------IAQGIGQVS--------------------------- 135

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                     M E   +I  A     +     +             + L       +D+ 
Sbjct: 136 ----------MYEFDAEIIGA-AAYSDQPGPDVERDGTNTAVALTAIKL------GYDED 178

Query: 240 FCALKEEYAKKLFDGRKMDSMS------RRTLIG----PHRSDLIVDYCDKA-ITIAHGS 288
           F  +++   + + +  ++          ++T  G       S +  D+     +     S
Sbjct: 179 FARIEDSLRRIIPNVERVRIRQAIVRRPKQTFPGESERVVGSKIFFDFRGAPGVPAHAAS 238

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-----GS 343
            G    + +   L       +      +LLLD+ +  L    +  L R++  +       
Sbjct: 239 EGTLITLALLTVL-------HGPNRPSVLLLDDFAESLHPQAQMELVRLIKRLLEEFKDL 291

Query: 344 QIFMTGTDKSVFDSLNETAKFM 365
           QI  T     + D L + A+ +
Sbjct: 292 QIVATTHSPYILDEL-DPAQVI 312


>gi|146307770|ref|YP_001188235.1| condensin subunit Smc [Pseudomonas mendocina ymp]
 gi|145575971|gb|ABP85503.1| condensin subunit Smc [Pseudomonas mendocina ymp]
          Length = 1162

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 102/324 (31%), Gaps = 44/324 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVSFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLAD----------ISIKLETRDDR-SVRCLQINDV 108
             DV   GS +    T A +E +   +D            I +  R  R       +N  
Sbjct: 61  MTDVIFNGSNTRKPVTQASIELIFDNSDNSLVGEYAAFAEISIRRRVTRDGQNTYFLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               E R F++             +
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEELRNFIEE---------AAGI 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             ++   R     +     + +  + +  ++     +++               E   K 
Sbjct: 171 SKYKERRRETENRIRRTQENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLKA 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-- 277
               ++        G  +Q     +  +   + + R  D+   R   G H      +   
Sbjct: 231 QLLALRWQTLNQQVGSREQVIGDQEVAFEALVAEQRSADAAIERLRDGHHELSERFNLVQ 290

Query: 278 -----CDKAITIAHGS--TGEQKV 294
                    I     S   G+Q++
Sbjct: 291 GRFYSVGGDIARVEQSIQHGQQRL 314


>gi|116628031|ref|YP_820650.1| chromosome segregation SMC protein [Streptococcus thermophilus
           LMD-9]
 gi|116101308|gb|ABJ66454.1| condensin subunit Smc [Streptococcus thermophilus LMD-9]
 gi|312278627|gb|ADQ63284.1| Condensin subunit Smc [Streptococcus thermophilus ND03]
          Length = 1177

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKSIEMQGFKSFADKTKVVFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+      ++      ++  +G       +I++E            IN   +R
Sbjct: 61  MPDVIFAGTEVRKALNYAEVAVTLDNSDGFIAGVGETIRVERHIYRNGDNDYLINGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    +RR   +
Sbjct: 121 LRDIRDLFMDTGLGRDSFSIISQGRVEAIFNAKPEDRRAIFE 162


>gi|325971129|ref|YP_004247320.1| SMC domain protein [Spirochaeta sp. Buddy]
 gi|324026367|gb|ADY13126.1| SMC domain protein [Spirochaeta sp. Buddy]
          Length = 949

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A  + L F    T  +G NG GK+NI++AI   L     +  R   
Sbjct: 1   MFLKSLEIYGFKSFADKVNLEFSDGITSLLGPNGCGKSNIVDAIKWVLGEQSTKTLRAGR 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLET---RDDRSVRCLQINDVV 109
             DV   G+               +  E   G+ +  ++++    R+  S   L  N V+
Sbjct: 61  MEDVIFNGTDTRKPLQVAEVTLVISNEERHLGIEEAEVEIKRRIFRNGDSEYYLNRNRVL 120

Query: 110 IRVVDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + EL       K          +D+I S    +RR   +
Sbjct: 121 LKNIRELFYDTGVGKSAYSILEQGKIDQILSSKPEDRRYIFE 162


>gi|269986423|gb|EEZ92710.1| intracellular protein transport protein [Candidatus Parvarchaeum
          acidiphilum ARMAN-4]
          Length = 88

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + I  + +   R++    + F     I  G+ G GKT+IL +I +   G+
Sbjct: 1  MIISKIKLENIRSHNKTEIQFTDGINIITGNTGSGKTSILMSIEYALFGK 50


>gi|218289469|ref|ZP_03493697.1| SMC domain protein [Alicyclobacillus acidocaldarius LAA1]
 gi|218240337|gb|EED07519.1| SMC domain protein [Alicyclobacillus acidocaldarius LAA1]
          Length = 514

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRASYA 62
           +KI  + +  FR++      F    T+  G NG GK+ + EA+ +   G     R+    
Sbjct: 1   MKILSIQLENFRSFTEASFQFHD-ITVISGHNGAGKSTLAEAVVWCLFGTDIAGRQKQDE 59

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            + R+G      T   +   + +    +   TR  R    L +N    + 
Sbjct: 60  KLMRLGEKRMAVTVTWLIRGKSV----VISRTRASRQGSTLLVNGKRAQP 105


>gi|148995303|ref|ZP_01824077.1| hypothetical protein CGSSp9BS68_01043 [Streptococcus pneumoniae
           SP9-BS68]
 gi|168488878|ref|ZP_02713077.1| RecF/RecN/SMC N domain protein [Streptococcus pneumoniae SP195]
 gi|147926782|gb|EDK77841.1| hypothetical protein CGSSp9BS68_01043 [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572544|gb|EDT93072.1| RecF/RecN/SMC N domain protein [Streptococcus pneumoniae SP195]
 gi|332073388|gb|EGI83867.1| recF/RecN/SMC N terminal domain protein [Streptococcus pneumoniae
           GA17570]
          Length = 529

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 130/393 (33%), Gaps = 78/393 (19%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR---RASYAD 63
           I  + +  F+ Y ++    +++  IFVG+NG GK+ +L  I  +  G       R+S + 
Sbjct: 2   ISRIILQNFKRYQNVDFTCNSEVNIFVGENGAGKSTLLYGIGLVLSG-SHSQIERSSLSS 60

Query: 64  VTRIGSPSFF----------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
           +    +   F            F  +   E   +IS         + + ++   + ++++
Sbjct: 61  IINQEAILEFMGTRDINQLPEVFIEIYFDELSTEISSNFNIEGKHNSQKIKAFGLSLKII 120

Query: 114 ---DELNKHLRIS------WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
              D + +   +              R+      E   F  +   + +  ++        
Sbjct: 121 PNQDYIAEITSVLNDSKWTVFPFEFYRV------EFLTFSGKTYSSYNKPYKFLHSMINT 174

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENFPH 223
            +    + + +      +  +I    AE   K+ +  R+   N L +L  + + KEN   
Sbjct: 175 SLIDTQQEI-QKRIHEVYLDNIS---AENRAKVNHQYRINSFNFLKTLRKDELLKENASE 230

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            +L      +  F  S  A+K                                  +    
Sbjct: 231 FQLHFDES-ENSFRNSVSAVK----------------------------------NGVDI 255

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-TDIG 342
              G  GE+      + L      S+      ILL++E   HL       L R++ ++ G
Sbjct: 256 KNLG-QGEK------VLLGVENAYSHLKETVKILLIEEPENHLSFQNLQKLVRMLSSNTG 308

Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
            Q+F+ GT  ++  S       + + N Q   +
Sbjct: 309 VQVFI-GTHSNMIASRLGVDNLLFLDNGQISKL 340


>gi|49481881|gb|AAT66652.1| DNA repair and genetic recombination protein [Bacillus caldotenax]
 gi|49481887|gb|AAT66655.1| DNA repair and genetic recombination protein [Geobacillus vulcani]
          Length = 573

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G+       A +EG+  L D           + ++  D                 +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   V+ ++   L           +           LD             +  + R 
Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  R   L          S  E QMA         R++++       +E    E     +
Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + AL++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|38146942|gb|AAR11857.1| DNA repair and genetic recombination [Geobacillus
           stearothermophilus]
          Length = 573

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G+       A +EG+  L D           + ++  D                 +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   V+ ++   L           +           LD             +  + R 
Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  R   L          S  E QMA         R++++       +E    E     +
Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + AL++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|89073846|ref|ZP_01160353.1| hypothetical protein SKA34_16975 [Photobacterium sp. SKA34]
 gi|89050381|gb|EAR55882.1| hypothetical protein SKA34_16975 [Photobacterium sp. SKA34]
          Length = 221

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  L++  F  +  L L F     I +G+N  GKT +L++I  LS
Sbjct: 2  ISELSLENFAAFKKLDLKFTPGINIIIGENSCGKTQLLKSIYALS 46


>gi|302658059|ref|XP_003020739.1| hypothetical protein TRV_05159 [Trichophyton verrucosum HKI 0517]
 gi|291184598|gb|EFE40121.1| hypothetical protein TRV_05159 [Trichophyton verrucosum HKI 0517]
          Length = 1194

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 35/313 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I  + ++ F  Y S       +  + +G NG GK+  + AI   L  G  +  R    A+
Sbjct: 120 IVRVKLTNFVTYTSAECHPGPRLNMVIGPNGTGKSTFVCAICLGLGWGPSYLGRAKDVAE 179

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL------- 116
             + G+             +   +  I    + + +     IN   +R    L       
Sbjct: 180 FVKHGADEATIEIELKARADMDQNPIICRTIKREGNKSTFSINGKPVRQNVVLSLAKSFS 239

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG-RN---RL 172
            +   +   +P      S  +      +D +           M+ +   ++  R+    +
Sbjct: 240 IQIDNLCQFLPQDK--VSEFAALSP--IDLLHSTQRAAAGPEMVKWHDGLKELRSGQKEI 295

Query: 173 LTEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
           L E        +++E   QM    V+    R E+   L    +E       P        
Sbjct: 296 LEESKGQREHLANLEKRQQMQREDVERMKQREEIKKRLK--FLEM--SRPLPRF------ 345

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GS 288
                  +    + E+  + L + ++++      L   +         +  +        
Sbjct: 346 ---NSCKKETSEVLEQKQRLLREQQELERKLEPALRAVNSKRAYYSKIEAVLKQKRVLSQ 402

Query: 289 TGEQKVVLVGIFL 301
            GE+    +   L
Sbjct: 403 RGEEAATAISEKL 415


>gi|332361745|gb|EGJ39549.1| DNA repair protein RecN [Streptococcus sanguinis SK1056]
          Length = 559

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD         +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLHLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|307154437|ref|YP_003889821.1| ATPase-like protein [Cyanothece sp. PCC 7822]
 gi|306984665|gb|ADN16546.1| ATPase-like protein [Cyanothece sp. PCC 7822]
          Length = 379

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 65/372 (17%), Positives = 129/372 (34%), Gaps = 57/372 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF---------LSPGRGFR 57
           ++ L I  FR + S  L    +  + VG N  GKT++LEA+           L+     R
Sbjct: 2   LQSLKIENFRCFRSFELNNLGRINLLVGKNNSGKTSLLEAVQLFSSQFDLKSLAQLMSSR 61

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIRVV 113
                +  +  S         +E +    ++S    IK+   D+ S   L+I        
Sbjct: 62  GEYLWENIKYSSDIIPVKTYEIEHLFYQHNLSAESQIKMMGIDNGSQGELKILFEENFEA 121

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
               +  R   +             E    +      I+         F++ +  + +L+
Sbjct: 122 TNYTRTSRPEPISIDDI-------SELELIIQWTEDNINS------NVFKKFLVKKEKLI 168

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            +      +    ++++A++GV I    ++ I+ L++L             K+ LT   D
Sbjct: 169 LD-QLRLEYKRIAKSKLAKIGVFIFPYSID-ISTLNTLFD-----------KIVLTS--D 213

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG-EQ 292
            +   +   + E   +++   R+     R    G      +V   ++   I  GS G   
Sbjct: 214 EQLVINALKILEPTIERIASVRQNQENFRTGEKG----GFLVKLSERQKPIPIGSMGDGI 269

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR----NALFRIVTDIGSQIFMT 348
              ++ + LA   +         ILL+DEI + L           ++     +  Q+F T
Sbjct: 270 WR-MLALVLAMVNV------EGGILLVDEIDSGLHYTTMYDMWKIIWHTAKKLNIQVFAT 322

Query: 349 GTDKSVFDSLNE 360
             +   + SL  
Sbjct: 323 THNSDCWTSLAN 334


>gi|7500037|pir||T34063 chromosome segregation protein smc1 F28B3.7 [similarity] -
           Caenorhabditis elegans
          Length = 1310

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 40/284 (14%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63
           +  L I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R   YAD
Sbjct: 45  LHTLEIENFKSYKGKHTIGPFTRFTAIIGPNGSGKSNLMDAISFVLGEKPSSLRVRKYAD 104

Query: 64  VTRIGSP--SFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHL 120
           +   G+P     +   RV      +D  +K  TR  +       ++   +       +  
Sbjct: 105 LI-HGAPINKPVAKKCRVTMNYKYSDGKVKAFTRGVNNGTSEHLLDGQTVTSAAYSQEME 163

Query: 121 RISWLVPSMDRIFSGL---------SMERRRFLDRMVFAID--PRHRRRMIDFERL---- 165
            I+  + + + +               ER +  + +  + +    + R  ++  +     
Sbjct: 164 SINIFIKARNFLVYQGAIENIAMKTPKERTQLFEELSRSHEFQAEYERLKVEMTKAEDDT 223

Query: 166 ---------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL---SSLIM 213
                    +    R       ++    +++ ++A     +       ++ L      I 
Sbjct: 224 QHNMNKRRGIAQEKREAKMEKDEAEKYQTMKNELAAKSTML------FLHQLFHCERTID 277

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           E  ++ N     ++       K +    A+ +E+ K L + +KM
Sbjct: 278 ESKEEINAQKKTIASLEATRSKEEAKIAAVHQEHRKALREVQKM 321


>gi|89098684|ref|ZP_01171566.1| Smc [Bacillus sp. NRRL B-14911]
 gi|89086646|gb|EAR65765.1| Smc [Bacillus sp. NRRL B-14911]
          Length = 1188

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L+I+ F+++A    + F    T  VG NG GK+NI ++I ++      +  R + 
Sbjct: 1   MFLKRLDIAGFKSFAEKSSVDFVPGVTAVVGPNGSGKSNITDSIRWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS S  S  FA V       D  + L+  +    R +  + 
Sbjct: 61  MEDIIFAGSDSRKSLNFAEVTLTLDNEDQFLPLDYNEVSVTRRVYRSG 108


>gi|300907182|ref|ZP_07124845.1| RecF/RecN/SMC protein [Escherichia coli MS 84-1]
 gi|301303609|ref|ZP_07209731.1| RecF/RecN/SMC protein [Escherichia coli MS 124-1]
 gi|300401057|gb|EFJ84595.1| RecF/RecN/SMC protein [Escherichia coli MS 84-1]
 gi|300841108|gb|EFK68868.1| RecF/RecN/SMC protein [Escherichia coli MS 124-1]
 gi|315257839|gb|EFU37807.1| RecF/RecN/SMC protein [Escherichia coli MS 85-1]
          Length = 399

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + +  F+++  L +    +  + VG NGVGKT + +   FL     F   S    
Sbjct: 1   MLIEAIKLKNFKSFQDLEMNNIPKFCVIVGANGVGKTTLFDVFGFLKDCLTFNVRSAVQK 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-----VRCLQINDVVIRVVDELNKH 119
            R G     S    V       ++  ++E           ++  + +   + V  E+ ++
Sbjct: 61  -RGGFEELLSRGVDVTDRTIEIEVKFRIEISGYERLVTYILKLKEDSRKKVYVEREILRY 119

Query: 120 LRISWLVPSMDRIFSGL 136
            R S+  P     FS  
Sbjct: 120 KRGSFGSPYHFLDFSRG 136


>gi|294676512|ref|YP_003577127.1| SMC protein, N-terminal domain-containing protein [Rhodobacter
          capsulatus SB 1003]
 gi|294475332|gb|ADE84720.1| SMC protein, N-terminal domain protein [Rhodobacter capsulatus SB
          1003]
          Length = 550

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          ++I  + I  FRN   +   FD     T+ +G NG GK+N++EAI
Sbjct: 1  MRIDRVYIDGFRNLQDVEADFDEGCLTTVIIGQNGAGKSNLIEAI 45


>gi|306831840|ref|ZP_07464996.1| cell division protein Smc [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426038|gb|EFM29154.1| cell division protein Smc [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 1179

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 68/387 (17%), Positives = 128/387 (33%), Gaps = 54/387 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A    + FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKEIEMQGFKSFADKTTIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+      ++      ++  +G    A  +I++E            I+   +R
Sbjct: 61  MPDVIFAGTENRKPLNYAQVIVTLDNSDGFIKDAKETIRVERHIYRNGDSEYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +     +   ++ R  + +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSVISQGRVEEIFNSKPEERRAIFEEAAGVLK--YKTRKKETQ 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVK---INIARVEM--------INAL 208
             +      L       Y   +    +E Q A++  +   +   R ++        I A 
Sbjct: 179 TKLNQTQDNLDRLDDIIYELETQVKPLERQ-AQVAKEFLGLEDERKQLHLNILVEDIQAD 237

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIG 267
              + E  Q        L+       +F++    LKE+  +   +  R+ + +   T   
Sbjct: 238 KDRLAELNQSLTAIKADLTAYYEQRQQFERQNQNLKEKRHQLSEEISRRQEGLLDITRAI 297

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA-----HARLISN-TTGFAPILLLDE 321
              SDL        +     S  E+K       LA      ARL          +  LD 
Sbjct: 298 ---SDLE---RQMDLIALESSQKEEKKQAASSQLADLKENQARLTEELAQKEQQLSQLDA 351

Query: 322 ISAHL--DEDKRNALFRIVTDIGSQIF 346
             A    D     A     +    Q+ 
Sbjct: 352 KLAQTTADIQALQAELDRFSTDPDQVI 378


>gi|49481899|gb|AAT66661.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A90]
          Length = 573

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G+       A +EG+  L D           + ++  D                 +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   V+ ++   L           +           LD             +  + R 
Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  R   L          S  E QMA         R++++      I E    E     +
Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLTFXLREI-EQAALEPGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + AL++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|56420924|ref|YP_148242.1| DNA repair protein [Geobacillus kaustophilus HTA426]
 gi|47076824|dbj|BAD18364.1| DNA repair protein [Geobacillus kaustophilus]
 gi|49481875|gb|AAT66649.1| DNA repair and genetic recombination protein [Geobacillus
           kaustophilus]
 gi|49481885|gb|AAT66654.1| DNA repair and genetic recombination protein [Geobacillus
           thermoleovorans]
 gi|49481893|gb|AAT66658.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A60]
 gi|56380766|dbj|BAD76674.1| DNA repair protein (recombination protein N) [Geobacillus
           kaustophilus HTA426]
 gi|312985018|gb|ADR30683.1| RecN [Geobacillus kaustophilus]
          Length = 573

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G+       A +EG+  L D           + ++  D                 +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   V+ ++   L           +           LD             +  + R 
Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  R   L          S  E QMA         R++++       +E    E     +
Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + AL++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|296133562|ref|YP_003640809.1| chromosome segregation protein SMC [Thermincola sp. JR]
 gi|296032140|gb|ADG82908.1| chromosome segregation protein SMC [Thermincola potens JR]
          Length = 1189

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          + +K L I  F++ A    L F+   T  VG NG GK+NI +AI ++   +     R A 
Sbjct: 1  MYLKRLEIQGFKSLADRTELYFNPGITAVVGPNGSGKSNISDAIRWVLGEQSAKILRGAK 60

Query: 61 YADVTRIGSP 70
            DV   GS 
Sbjct: 61 MEDVIFSGSD 70


>gi|291003075|ref|ZP_06561048.1| recombination and DNA repair protein [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 606

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 87/264 (32%), Gaps = 40/264 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L      T+  G+ G GKT ++  +  L  GR     +
Sbjct: 1   MLAEMRIQGLGVID-----DATLELHPGLTVVTGETGAGKTMVVTGLHLLGGGR-----A 50

Query: 61  YADVTRIGSPSFFST-------------FARVEGMEGLADISIKLETR---DDRSVRCLQ 104
            A   R G+P                   AR  G E   D S+        D RS   L 
Sbjct: 51  DASRVRSGAPRAVVEGRFETTPESPAAKVARDAGAEPDEDGSLIAVRNVNADGRSRAHLG 110

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDF 162
              V   V+ EL + +          R+  G        RF    V      ++R   ++
Sbjct: 111 GRSVPNAVLSELAEQVLAVHGQNDQLRLLRGGEQRAVLDRFAGDSVLRPLADYQRTRSEW 170

Query: 163 ERLMR------GRNR-LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
              +R       R+R L  E        S I+A   E G         +++    L    
Sbjct: 171 AEAVREITERTQRSRELAREADLLRHGLSEIDAVAPEPGED-----TALVDEARRLADVD 225

Query: 216 VQKENFPHIKLSLTGFLDGKFDQS 239
             +E     +++L+G +DG  D  
Sbjct: 226 QLREIATGAQIALSGAVDGDPDAP 249


>gi|294955762|ref|XP_002788667.1| Structural maintenance of chromosome, putative [Perkinsus marinus
           ATCC 50983]
 gi|239904208|gb|EER20463.1| Structural maintenance of chromosome, putative [Perkinsus marinus
           ATCC 50983]
          Length = 1222

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 5   IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + +K L I  ++ Y  L   +   A   + VG NG GK+NI  AI F   G G  +    
Sbjct: 1   MHLKKLTIKGYKTYRDLTTIVDLHAGVNVLVGLNGSGKSNIFSAIRFALGGDGVSKEQQR 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
                 S       A VE     +D  I ++  +    R + IN
Sbjct: 61  RAMLHESQGQQVASAFVEVTFDNSDGKIPVDKAEVVLRRTITIN 104


>gi|237803334|ref|ZP_04590919.1| SMC domain-containing protein [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331025315|gb|EGI05371.1| SMC domain-containing protein [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 574

 Score = 57.2 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 124/368 (33%), Gaps = 75/368 (20%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +  FRN+A   +  + ++T+ +G N VGKTN++ A+  L   +     S A++
Sbjct: 1   MLITKVVLKGFRNFADATINLE-RNTLIIGANNVGKTNLVYALRLL-LDKSL---SDAEI 55

Query: 65  TRIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDR--------SVRCLQI 105
             + S    S   ++           E  E     S+K    DD           R L  
Sbjct: 56  EPMESDFHISGAGKISDTLSITVYFSEVTEDAVLASLKGNITDDSCFALQYTADRRSLTY 115

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
           +  +      L +        PS   +                  I+ R+ +   D E+ 
Sbjct: 116 DIKIGATRSSLVEI-------PSRYYLK----------------HINLRYVKSRRDLEKY 152

Query: 166 MR-GRNRLLTEGYFDSSWCS--SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           +   + +LL     + S     S   +MA +G        + + A++  I          
Sbjct: 153 INTEKRQLLKLSLENRSVTESKSDHREMARIG--------KALEAINDKIRN-------- 196

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
              L          ++    L  ++++      ++   S    +      L +       
Sbjct: 197 ---LHYVKGATDSVNEELQKLAHDFSE-----YEVKLDSGAIQVQQFIDSLRLGASTSGA 248

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDI 341
           ++  G  G    +L+ ++ A ++   +         ++E  AHL   ++  L   ++ D+
Sbjct: 249 SVMLGGDGRNNQILMALWKAKSQREHDPDSEVVFYCVEEPEAHLHPHQQRKLADYLINDL 308

Query: 342 GSQIFMTG 349
             Q  +T 
Sbjct: 309 PGQTLITS 316


>gi|324990644|gb|EGC22580.1| DNA repair protein RecN [Streptococcus sanguinis SK353]
          Length = 552

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD         +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLHLKGRYQETFDRYRGLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|255658106|ref|ZP_05403515.1| putative cell division protein Smc [Mitsuokella multacida DSM
           20544]
 gi|260849411|gb|EEX69418.1| putative cell division protein Smc [Mitsuokella multacida DSM
           20544]
          Length = 1197

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 20/161 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++K L    F+++A  + + FD   T  VG NG GK+NI +A+ ++      R  R   
Sbjct: 1   MQLKRLEAYGFKSFADKITIEFDHGITAIVGPNGSGKSNITDAVRWVLGEQNIRNLRGTR 60

Query: 61  YADVTRIGSP-------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRV 112
             D+   GS        +  S     +G   +    + +  R  RS      IN    R+
Sbjct: 61  SEDIIFAGSAQRRPLNIAEVSLIFDNDGTLPVDFREVAVTRRLYRSGESEYFINRSRCRL 120

Query: 113 VDEL-------NKHLRISWL-VPSMDRIFSGLSMERRRFLD 145
            D           H  +S +    M+ I +    +RR F +
Sbjct: 121 KDIYQLFADTGIGHDGMSIIGQNRMEDILNSRPEDRRAFFE 161



 Score = 36.8 bits (84), Expect = 5.7,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 27/215 (12%)

Query: 166  MRGRNRLLTE-----GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
            +R R + L       G  + +     E             R   +   S+ ++E   KEN
Sbjct: 970  LRSRMQSLKRQMDAIGPVNPNAVEEYEN---------LQKRHAFMKKQSTDLIE--AKEN 1018

Query: 221  FPHIKLSLTGFLDGKFDQSFCALKEEYAK---KLFDGRKMDSMSRRTLIGPHRS-DLIVD 276
               I   +   +  +F  +F  ++  + +   +LF G K +          H   D++V 
Sbjct: 1019 LGRILAEMDEAMTKQFQSAFADIQRYFGEIFVRLFGGGKAELKMLDESDVLHTGIDILVT 1078

Query: 277  Y-CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                K  ++A  S GE+ + ++ +  A  R        +P  +LDEI A LDE       
Sbjct: 1079 LPQKKRQSLAALSGGERALTVIALLFAFLRY-----RPSPFSVLDEIDAPLDEANVMRFG 1133

Query: 336  RIVTDIGSQI-FMTGTDKSVFDSLNETAKFMRISN 369
            R + +   Q  F+  T +     + +T   + +  
Sbjct: 1134 RFLQEFAEQTQFIVVTHRKGTMEVADTMYGVTVEE 1168


>gi|169347061|ref|ZP_02866003.1| conserved hypothetical protein [Clostridium perfringens C str.
          JGS1495]
 gi|169296744|gb|EDS78873.1| conserved hypothetical protein [Clostridium perfringens C str.
          JGS1495]
          Length = 579

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 13/92 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +K K L I  FRN+  + +  D +  +  G N +GKTN L AI FL            DV
Sbjct: 1  MKFKSLEIKNFRNFECININLDNK-NVIFGMNDIGKTNFLYAIRFLL---------DKDV 50

Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
           +     F  T      +E    I+++L+  D
Sbjct: 51 RK---NRFVQTDYHRNNIENNISITLELDISD 79


>gi|152984252|ref|YP_001347744.1| hypothetical protein PSPA7_2377 [Pseudomonas aeruginosa PA7]
 gi|150959410|gb|ABR81435.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 581

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 40/85 (47%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I  L I+ F+      L   A   +  G NG GK+++L+AI+    G+  R +   ++
Sbjct: 1  MRITKLEITNFQGLRHAALDVSAPVLLVAGHNGAGKSSLLDAIAMAFNGQPRRVSLKKEM 60

Query: 65 TRIGSPSFFSTFARVEGMEGLADIS 89
           ++ +       + VE ++   ++ 
Sbjct: 61 DKLVTEGAKKGESSVEWLDESGEVQ 85


>gi|56756200|gb|AAW26275.1| SJCHGC07244 protein [Schistosoma japonicum]
          Length = 219

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYA 62
           ++K++ +  +++Y     +   +  T  +G NG GK+N+++AISF+     R  R     
Sbjct: 7   RLKYIELENYKSYKGKQVIGPFSVFTAIIGPNGSGKSNLMDAISFVLGENTRHLRVRRLN 66

Query: 63  DVTRIGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
           D+   GS      +  A V  +  + D   K  +R         +IN V +R
Sbjct: 67  DLI-HGSVVGKPVAKSASVTAVYEMPDGEEKRFSRVIHGNTSEYRINGVSVR 117


>gi|85714259|ref|ZP_01045247.1| Chromosome segregation protein SMC [Nitrobacter sp. Nb-311A]
 gi|85698706|gb|EAQ36575.1| Chromosome segregation protein SMC [Nitrobacter sp. Nb-311A]
          Length = 1168

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K+  L +  F+++      V +   T  VG NG GK+N++EA+ +    +  +  R A 
Sbjct: 1   MKLTRLRLHGFKSFVEPTDFVIEPGLTGVVGPNGCGKSNLVEALRWAMGETSYKSLRAAD 60

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADIS----------IKLETRDDR-SVRCLQINDV 108
              V   GS        A V      +D S          +++  R +R +    +IN  
Sbjct: 61  MDAVIFAGSGNRPARNNAEVVMSIDNSDRSAPSAFNDSEALEISRRIEREAGSVYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR 146
            +R  D   L          P++        I      +RRR L+ 
Sbjct: 121 DVRARDVQILFADAATGARSPALVHQGKIGEIIQAKPEQRRRVLED 166



 Score = 39.5 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  T++  S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1056 GKKPQTLSLLSGGEQALTALALIFAVF-----LTNPSPICVLDEVDAPLDDHNVERFCNL 1110

Query: 338  VTDI 341
            + ++
Sbjct: 1111 LHEM 1114


>gi|328553510|gb|AEB24002.1| chromosome partition protein SMC [Bacillus amyloliquefaciens
          TA208]
 gi|328911698|gb|AEB63294.1| chromosome condensation and segregation SMC ATPase [Bacillus
          amyloliquefaciens LL3]
          Length = 1186

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K L++  F+++   + + F    T  VG NG GK+NI EAI ++      R  R   
Sbjct: 1  MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITEAIRWVLGEQSARSLRGGK 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFAGSDS 71


>gi|302874774|ref|YP_003843407.1| chromosome segregation protein SMC [Clostridium cellulovorans 743B]
 gi|307690610|ref|ZP_07633056.1| chromosome segregation protein SMC [Clostridium cellulovorans 743B]
 gi|302577631|gb|ADL51643.1| chromosome segregation protein SMC [Clostridium cellulovorans 743B]
          Length = 1191

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/268 (19%), Positives = 98/268 (36%), Gaps = 28/268 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K + +  F+++A    +      T  VG NG GK+NI +AI ++   +     R   
Sbjct: 1   MYLKAIELRGFKSFADKTEIELKDGITAIVGPNGSGKSNISDAIRWVLGEQSVKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             DV   G+        A+V  +   +D  + L+       R L         IN+   R
Sbjct: 61  MEDVIFAGTAYRKPVGLAQVALILDNSDHGLPLDYSQVTISRRLFRSGDSEYYINNTKCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          ++ + SG S ERR  L+     +   ++ R  + E
Sbjct: 121 LKDIHELFMDTGIGKEGYSIISQGKIEALLSGSSDERRELLEEAAGIVK--YKSRKNESE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +   N         +   S+ E ++  L ++ +    E +    SL    +       
Sbjct: 179 KKL---NLTEQNIVRLNDILSTYEERLGPLEIE-SEKAKEFLKLSESLKNNEISLMIDSV 234

Query: 224 IKLSLTGFLDGK-FDQSFCALKEEYAKK 250
            K+     ++ +   Q   ALKE Y  K
Sbjct: 235 EKIQSKLEVNKEALKQQEEALKEIYEDK 262


>gi|146282218|ref|YP_001172371.1| chromosome segregation SMC protein, putative [Pseudomonas stutzeri
           A1501]
 gi|145570423|gb|ABP79529.1| chromosome segregation SMC protein, putative [Pseudomonas stutzeri
           A1501]
          Length = 1162

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 106/324 (32%), Gaps = 44/324 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVSFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   GS +    T A +E +   +D            I +  R  R S     +N V
Sbjct: 61  MTDVIFNGSNTRKPVTQASIELIFDNSDGTLTGEYAAFAEISIRRRVTRDSQNTYFLNGV 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               + R F++             +
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAGI 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             ++   R     +   + + +  + +  ++     +++               E   K 
Sbjct: 171 SKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQSAEKYQEYKAEERQLKA 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH-------RSD 272
               ++        G+ +Q     +  +   + + R  D+   R   G H       +  
Sbjct: 231 QLSALRWQALNEQVGQREQVIGDQEVAFEALVAEQRSADASIERLRDGHHELSERFNQVQ 290

Query: 273 LIVDYCDKAITIAHGS--TGEQKV 294
                    I     S   G+Q++
Sbjct: 291 GRFYSVGGDIARVEQSIQHGQQRL 314


>gi|119490636|ref|ZP_01623041.1| Exonuclease SbcC [Lyngbya sp. PCC 8106]
 gi|119453801|gb|EAW34958.1| Exonuclease SbcC [Lyngbya sp. PCC 8106]
          Length = 1029

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 9  FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L +  F +Y    L F   HT    G NG GK+++LEAI++ +     R A+  D+  +
Sbjct: 5  KLTLKNFLSYREASLDFSGLHTACICGSNGAGKSSLLEAITW-AIWGSSRAATEDDIIHL 63

Query: 68 GSPSFFSTFARV 79
          G       FA +
Sbjct: 64 GEMEAQVNFAFI 75



 Score = 36.4 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 144  LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
            L+  +  +D + + R    ++ +      L       ++  S+  Q  E   ++  AR +
Sbjct: 793  LNEQIQQLDRQIQHRRQQMDQTLSQ----LGSLKQQQAYLESLNTQQNEQKQQLETARRQ 848

Query: 204  M--INALSSLIMEY-VQKENFPHIKLSLTGFLDGKFDQ-SFCALKEEYAKKLFDGRKMDS 259
                + L+    +  +Q     ++   L    +    + S   L  ++  +   GR   S
Sbjct: 849  YRVYSELAQAFGKNGIQALMIENVLPQLEAETNQILSRLSANQLHIQFITQ-RAGRSNKS 907

Query: 260  MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-PILL 318
              ++T       D+++            S GE   +   I LA A+L++   G A  +L+
Sbjct: 908  SKKKTAKLIDTLDILIADAQGTRPYETYSGGEAFRINFAIRLALAKLLAQRAGTALQMLI 967

Query: 319  LDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDS 357
            +DE     D +  + L   +  I S     +T T       
Sbjct: 968  IDEGFGTQDAEGCSRLIAAINAISSDFACILTVTHMPHLKE 1008


>gi|134095191|ref|YP_001100266.1| hypothetical protein HEAR1999 [Herminiimonas arsenicoxydans]
 gi|133739094|emb|CAL62143.1| Conserved hypothetical protein, putative ATP-dependent endonuclease
           [Herminiimonas arsenicoxydans]
          Length = 594

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 118/355 (33%), Gaps = 51/355 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           +++  + +  F N++ + +       + VG+N VGK+N +  +   L PG   R      
Sbjct: 1   MRVSRVRLINFANFSDVDVETGESI-VIVGENKVGKSNFIRGLQLILDPGLSER---DRQ 56

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           +   G   F+      + +    ++S+ L   T D R                 L  HL 
Sbjct: 57  L---GLEHFWDGLGE-DKVGATIEVSVDLTDFTNDPR-----------------LMAHLN 95

Query: 122 ISWLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
              + P       G  M  R   RF  +      P     + D+E ++ G N        
Sbjct: 96  DCVIDP-------GPPMVARLTYRFQPKAGLGRAP---ESLKDYEYVIFGGNDPEMRIGG 145

Query: 179 DSSWCSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLDGK 235
                  I+ Q+A    +  +   R   +  L   +   +  +    I+  +     +  
Sbjct: 146 ALRRMLPIDVQVALRDAEKDLASWRNSPLRPLIEDLAASLDDDAREEIQNQVDQAQRELA 205

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTL-IGPHRSD-----LIVDYCDKAITIAHGST 289
             +   A  E  +++L            +L + P R D     L +   +    +   S 
Sbjct: 206 GHEEVVATAERISERLIAIAGGQHAVPVSLGLAPTRVDALLRSLRLLIDNGVRGVGDASL 265

Query: 290 GEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
           G   ++ + +  L   RL+S         +++E  AHL    +  ++R      +
Sbjct: 266 GTANLIFLALKSLELDRLVSEGERDHTFFVVEEPEAHLHPHVQRLVYRYFLGTRA 320


>gi|49481889|gb|AAT66656.1| DNA repair and genetic recombination protein [Geobacillus
           stearothermophilus]
          Length = 573

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G+       A +EG+  L D           + ++  D                 +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   V+ ++   L           +           LD             +  + R 
Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  R   L          S  E QMA         R++++       +E    E     +
Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + AL++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|313500657|gb|ADR62023.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 631

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          +++K L+IS ++N  +  L FD +    +FVG NG GK+N+ EA+
Sbjct: 1  MRLKLLSISHYKNLKNFNLEFDGESFVDLFVGKNGSGKSNLFEAL 45


>gi|254572810|ref|XP_002493514.1| Component of the condensin complex, essential SMC chromosomal
           ATPase family member [Pichia pastoris GS115]
 gi|238033313|emb|CAY71335.1| Component of the condensin complex, essential SMC chromosomal
           ATPase family member [Pichia pastoris GS115]
          Length = 1133

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D+Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVEELIIDGFKSYATRTVISGWDSQFNAITGLNGSGKSNILDAICFVLGISSMTTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E L  IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNSDTDKSPIGFEKLPSISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    L     +   + + + +    
Sbjct: 120 HRAQQQTVLQLFQSVQLNINNPNFLIMQG 148


>gi|218187327|gb|EEC69754.1| hypothetical protein OsI_39293 [Oryza sativa Indica Group]
          Length = 1246

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          +I  L +  F++Y  +  +      T  +G NG GK+N+++AISF+   R    R A   
Sbjct: 15 RIHRLEVENFKSYKGTQTIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRSAHLRGAQLK 74

Query: 63 DVT 65
          D+ 
Sbjct: 75 DLI 77


>gi|170744955|ref|YP_001773610.1| chromosome segregation protein SMC [Methylobacterium sp. 4-46]
 gi|168199229|gb|ACA21176.1| chromosome segregation protein SMC [Methylobacterium sp. 4-46]
          Length = 1144

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L I  F+ +     +  +   T  +G NG GK+N++EA+ ++   S  +  R + 
Sbjct: 1   MRLTRLRIVGFKTFVEPSEVPIEPGLTGIIGPNGCGKSNLVEALRWVMGESSHKSLRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDRS-VRCLQINDV 108
             DV   GS      S       ++     A        ++ +  R DR      ++N  
Sbjct: 61  MDDVIFSGSGGRPGRSHAEVTLSLDNSARTAPAAFNGADALDVTRRIDRGAGSTYRVNGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P+M R      + +     RRR L+
Sbjct: 121 EVRARDVQLLFADASTGARSPAMVRQGQVAEMIAAKPQARRRVLE 165


>gi|195027327|ref|XP_001986535.1| GH20475 [Drosophila grimshawi]
 gi|193902535|gb|EDW01402.1| GH20475 [Drosophila grimshawi]
          Length = 1176

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 96/275 (34%), Gaps = 33/275 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + +K L +  F++Y     +  FD + T   G NG GK+NIL+++ F   +S  +  R +
Sbjct: 1   MYVKKLVLDGFKSYGKRTEIDGFDPEFTAITGLNGSGKSNILDSVCFVLGISNLQNVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +IS+  +       + L IN 
Sbjct: 61  ALQDLVYKNGQAGITKATVTIVFDNTNAAQCPPGYEKCREISVTRQVVVGGKNKFL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMID 161
            +++     +    +   V + + +           M+ +  L  +  A      +   D
Sbjct: 120 KLVQNKKVQDFFCSMQLNVNNPNFLIMQGKIQQVLNMKPKEVLSMIEEAAGTSMYKSKRD 179

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             + +  +     E     +    ++ ++     K+   R          + +    E  
Sbjct: 180 ATKTLIEK----KEAKVRETSM-LLDEEVLPKLEKLRKERAAY-QEYQKTVRDI---EFL 230

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            HI +S T        QS  A +++   ++   R+
Sbjct: 231 THIHISATYLKLDDALQSVEANEQKIEHRITTCRE 265


>gi|325474162|gb|EGC77350.1| hypothetical protein HMPREF9353_01700 [Treponema denticola F0402]
          Length = 366

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 16/101 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS------------P 52
           +K   L IS FR   + +L    Q  + VG N  GKT++LEA+  LS             
Sbjct: 1   MKFDELQISNFRGIDNAKLKKLEQVNLIVGKNNSGKTSLLEAMFLLSGMSNPELLLSINT 60

Query: 53  GRGFRRASYADV--T--RIGSPSFFSTFARVEGMEGLADIS 89
            R  + A+  D       +          ++ G+E  A IS
Sbjct: 61  FRSLKLANDNDFKYIFYNLNMDKSIKLSGKISGIERRATIS 101


>gi|299536777|ref|ZP_07050085.1| chromosome partition protein smc [Lysinibacillus fusiformis ZC1]
 gi|298727789|gb|EFI68356.1| chromosome partition protein smc [Lysinibacillus fusiformis ZC1]
          Length = 1193

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 95/267 (35%), Gaps = 39/267 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++   + + F    T  VG NG GK+N+ +AI ++      +  R A 
Sbjct: 1   MFLKRLEVIGFKSFAERIGIDFVPGVTAVVGPNGSGKSNVTDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS S     F      ++  +     S    +   R  R       +N+   R
Sbjct: 61  MEDVIFAGSDSRKPLNFAEVTLILDNTDEQLAFSYTEVSVTRRVYRSGDSEYLLNNQQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I +    +RR   +             ++ ++
Sbjct: 121 LKDITDLFMDSGLGKEAFSIISQGRVDEILNSRPDDRRSIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
             +R +         D +    ++  + EL       R+E +   +S   +YVQ      
Sbjct: 172 --IRKKKAEHKLVETDENLYRVLDI-LHEL-----DNRLEPLEMQASSARDYVQMSSELK 223

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAK 249
              +++         QS  ALKEE+ +
Sbjct: 224 DFDIAILVHDFRNCAQSLHALKEEFTE 250


>gi|310778882|ref|YP_003967215.1| chromosome segregation protein SMC [Ilyobacter polytropus DSM 2926]
 gi|309748205|gb|ADO82867.1| chromosome segregation protein SMC [Ilyobacter polytropus DSM 2926]
          Length = 1170

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           + +K + I+ F+++A  + L F+   T  VG NG GK+NIL+AI ++   + +   R   
Sbjct: 1   MHLKAVEINGFKSFAEKINLDFNTGITSIVGPNGSGKSNILDAILWVLGEQSYKNIRAKE 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   G  +    + A V      +D  + LE  D +  R L         IND   R
Sbjct: 61  SRDVIFSGGKNKKPKSLAEVSLYIDNSDRVLPLEIDDIKVTRRLHKTGENQYLINDTKAR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|315498141|ref|YP_004086945.1| chromosome segregation protein smc [Asticcacaulis excentricus CB
           48]
 gi|315416153|gb|ADU12794.1| chromosome segregation protein SMC [Asticcacaulis excentricus CB
           48]
          Length = 1154

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           ++ + L +S F+++        +   T  VG NG GK+N+LEA+ ++         R A 
Sbjct: 1   MQFQRLKLSGFKSFVDASEFRIEPGLTGIVGPNGCGKSNLLEALRWVMGATSAKAMRGAG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   GS      ++      ++    LA         + +  R DR      ++N  
Sbjct: 61  MEDVIFAGSDKRPARNWAEVTLTIDNSARLAPQPFTDHPVLDIARRIDRGQGSTYKVNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + +     RRR L+
Sbjct: 121 EVRARDVQLLFADASTGANSPALVRQGQISELIAAKPQNRRRVLE 165


>gi|226323112|ref|ZP_03798630.1| hypothetical protein COPCOM_00884 [Coprococcus comes ATCC 27758]
 gi|225208302|gb|EEG90656.1| hypothetical protein COPCOM_00884 [Coprococcus comes ATCC 27758]
          Length = 148

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I+ ++I  FRN+    + F  + T+ +G N VGKTN+L A+  L
Sbjct: 1  MRIEKIHIKGFRNFEDEEIFFQPK-TLIIGANDVGKTNLLYALRIL 45


>gi|168029501|ref|XP_001767264.1| condensin complex component SMC1 [Physcomitrella patens subsp.
          patens]
 gi|162681519|gb|EDQ67945.1| condensin complex component SMC1 [Physcomitrella patens subsp.
          patens]
          Length = 1247

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          +I+ L I  F++Y     +      T  +G NG GK+N+++AISF+   R    R A   
Sbjct: 9  RIERLEIENFKSYKGHQIVGPFKNFTAIIGPNGAGKSNLMDAISFVLGVRSMQLRGAQLK 68

Query: 63 DV 64
          D+
Sbjct: 69 DL 70


>gi|291543886|emb|CBL16995.1| hypothetical protein RUM_08090 [Ruminococcus sp. 18P13]
          Length = 539

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + I  L +  ++    + +  + +  IFVG+N  GK+ ILE +S ++ G+
Sbjct: 1  MYISKLIVKNYKLLKEVNIDLNEKINIFVGENDSGKSTILEVLSIITSGK 50


>gi|257215854|emb|CAX83079.1| Structural maintenance of chromosomes protein 2 [Schistosoma
           japonicum]
          Length = 568

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF-RRA 59
           + IK L I  F++Y     +  FD Q     G NG GK+NIL+AI FL         R A
Sbjct: 1   MYIKSLVIDGFKSYCQRTEIDGFDPQFNAITGLNGSGKSNILDAICFLLGITNLSHVRAA 60

Query: 60  SYADVTRIGSPSFF------STFARVE------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++      +        + F  V+      G E   +++I  +       + L IN 
Sbjct: 61  NLHELVYKCGQAGINKATVSAVFDNVDKSQSPYGYEQFDELTITKQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
                    +    +   V +   +    
Sbjct: 120 TNATTTRVHDLFHSVQLNVNNPHFLIMQG 148


>gi|220928146|ref|YP_002505055.1| chromosome segregation protein SMC [Clostridium cellulolyticum H10]
 gi|219998474|gb|ACL75075.1| chromosome segregation protein SMC [Clostridium cellulolyticum H10]
          Length = 1190

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + ++ L I  F+++A  + L F+   T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1   MYLRKLEIQGFKSFADKISLDFNNGITAVVGPNGSGKSNISDAVRWVLGEQSAKTLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   G+       F      ++  +    +S    T   R  R       IN    R
Sbjct: 61  MEDIIFAGTEHRKPVGFAEVSLTIDNTDNYLPVSYSEVTVTRRVYRSGESEYYINKTSCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|195334479|ref|XP_002033905.1| GM20175 [Drosophila sechellia]
 gi|194125875|gb|EDW47918.1| GM20175 [Drosophila sechellia]
          Length = 1179

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 18/124 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + +K L +  F++Y     +  FD + T   G NG GK+NIL++I F   +S  +  R +
Sbjct: 1   MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +           +G E   +IS+  +       + L IN 
Sbjct: 61  ALQDLVYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVTRQVVVGGKNKFL-ING 119

Query: 108 VVIR 111
            +++
Sbjct: 120 KLVQ 123


>gi|194466492|ref|ZP_03072479.1| chromosome segregation protein SMC [Lactobacillus reuteri 100-23]
 gi|194453528|gb|EDX42425.1| chromosome segregation protein SMC [Lactobacillus reuteri 100-23]
          Length = 1187

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 109/304 (35%), Gaps = 29/304 (9%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  L +  F+++A    + F+   T  VG NG GK+NI+EAI ++   +     R   
Sbjct: 1   MQLLSLTLDGFKSFAQKTTIKFEPGMTGIVGPNGSGKSNIIEAIQWVMGEQSAHHLRGDR 60

Query: 61  YADVTRIGSPS------FFSTFARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIR 111
            ADV   GS           +         LA    +L               IND  +R
Sbjct: 61  MADVIFNGSSDRKPLNRALVSITLDNSDHYLASEFTELTITRKIYRNGDSEYLINDQNVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+G  ++RR  ++ +      ++++     E
Sbjct: 121 LKDITDLFIDSGLGRESFSIISQGRIEEIFNGKPIDRRGIIETVAG--VAKYKKNKETAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL-IMEYVQKENFP 222
           + +      +      +   S +E Q+  L  + +    + +       +++  Q     
Sbjct: 179 KRL---TTTMENLNRVNDIISELEKQIEPL-EEQSAIAQDYLEQKKQFDVLDRTQTVRHY 234

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD-SMSRRTLIGPHRSDLIVDYCDKA 281
                    L  K +Q+   +K+   +   D +++D    +R  +   +  L     ++ 
Sbjct: 235 DEYYEKLTKLGAKLEQAEAMVKDYQGQAGHDRQQLDNLKQKRQQLNATKDRLQAIILNQT 294

Query: 282 ITIA 285
             IA
Sbjct: 295 EAIA 298


>gi|19922276|ref|NP_610995.1| SMC2 [Drosophila melanogaster]
 gi|5815438|gb|AAD52673.1|AF179287_1 SMC2 [Drosophila melanogaster]
 gi|7303132|gb|AAF58197.1| SMC2 [Drosophila melanogaster]
          Length = 1179

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 18/124 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + +K L +  F++Y     +  FD + T   G NG GK+NIL++I F   +S  +  R +
Sbjct: 1   MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +           +G E   +IS+  +       + L IN 
Sbjct: 61  ALQDLVYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVTRQVVVGGKNKFL-ING 119

Query: 108 VVIR 111
            +++
Sbjct: 120 KLVQ 123


>gi|332665393|ref|YP_004448181.1| SMC domain-containing protein [Haliscomenobacter hydrossis DSM
          1100]
 gi|332334207|gb|AEE51308.1| SMC domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 647

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + I    I  F++   + L F+    I  G N  GKT +LEA+S 
Sbjct: 1  MYIHKFQIKNFKSIKDITLYFNKGLNIITGVNNSGKTTVLEALSL 45


>gi|327441089|dbj|BAK17454.1| chromosome segregation ATPase [Solibacillus silvestris StLB046]
          Length = 1193

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++   + + F    T  VG NG GK+N+ +AI   L     +  R A 
Sbjct: 1   MFLKRLEVVGFKSFAERIGIDFVPGVTAVVGPNGSGKSNVTDAIRWVLGEQSAKSLRGAK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS S     F      ++  +    I    + +  R  RS      +N+   R
Sbjct: 61  MEDVIFAGSESRRALNFAEVTLVLDNTDEQVAIPYTEVSVTRRVYRSGESEYLLNNQQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L K          +D I +    +RR   +
Sbjct: 121 LKDITDLFMDSGLGKEAFSIISQGRVDEILNSRPDDRRSIFE 162


>gi|291566231|dbj|BAI88503.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 438

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I  L ++ FR +      F +   + VG NGVGK+ IL+ I  +
Sbjct: 1  MQINQLTLTNFRGFEQAEFEFKSGMNLLVGINGVGKSTILDVIRIM 46


>gi|323466306|gb|ADX69993.1| Cell division protein Smc [Lactobacillus helveticus H10]
          Length = 1189

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +  L +  F+++A    + F+   T  VG NG GK+NI EAI ++   +  +  R  +
Sbjct: 1  MPLTELVLDGFKSFADRTTIHFNDGITGIVGPNGSGKSNITEAIRWVMGEASAKSLRGMN 60

Query: 61 YADVTRIGSP 70
            DV   GS 
Sbjct: 61 MKDVIFAGSQ 70


>gi|313891756|ref|ZP_07825361.1| DNA repair protein RecN [Dialister microaerophilus UPII 345-E]
 gi|313119750|gb|EFR42937.1| DNA repair protein RecN [Dialister microaerophilus UPII 345-E]
          Length = 558

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 98/262 (37%), Gaps = 32/262 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+IS F     + +      T+F G+ G GK+ +++A+S L+ G+  R ++   + R
Sbjct: 2   LRSLHISNFAIIKDIEMELGDGVTVFTGETGSGKSILVDALSLLA-GK--RGSTD--LIR 56

Query: 67  IGSPSF------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRV 112
            G   F             S  +  E  +   DI I  +        C  +N     ++ 
Sbjct: 57  SGEDFFCVEGIFSINKSIVSLLSEFEVNDDNEDIIISRKMNKSGKSTCT-VNGFFCSVKK 115

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG---- 168
           ++E+ K L           + +        F  R++       +    ++ ++       
Sbjct: 116 LEEIGKKLFRFHEQYDNTDLLNSD------FCKRIIDNFSVEIKSAWNEYSKIYSDWKTT 169

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
           ++++      +  +   ++  + E   +I  AR+  +   S +  +    +N+  I+  L
Sbjct: 170 KSKIEKLNKEEQEYQRKLDVLLWET-QQIEDARI-CLEEDSKIAQKLSILQNYERIQDGL 227

Query: 229 TGFLDGKFDQSFCALKEEYAKK 250
               +   +++    K   A+K
Sbjct: 228 QTVSNILSEENGIQDKLSVAEK 249


>gi|331246889|ref|XP_003336075.1| structural maintenance of chromosomes protein 3 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
 gi|309315065|gb|EFP91656.1| structural maintenance of chromosomes protein 3 [Puccinia graminis
           f. sp. tritici CRL 75-36-700-3]
          Length = 1221

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 10/117 (8%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60
           + I+ L I  F++Y        F     + VG NG GK+N   AI FL         R  
Sbjct: 1   MHIESLTIQGFKSYRDATSVEHFSPGVNVVVGRNGSGKSNFFSAIRFLLNDQYGSLTRED 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              +   GS +  +  A VE +   +D       R       + I   +    DE +
Sbjct: 61  RQSLLHEGSDNNSTFSAFVEAVFDNSDQ------RFPTGKSQVIIRRTIGSKKDEYS 111



 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 279  DKAITIAHGSTGEQKVVLVGIFLAHARLIS------NTTGFAPILLLDEISAHLDEDKRN 332
            D+ + I   S G++ +V +        +++           AP  L DEI A+LD D+R 
Sbjct: 1095 DEGLRIQQLSGGQKSLVALATKDGPIYVLNWVVFAIQKCDPAPFYLFDEIDANLDPDRRT 1154

Query: 333  ALFRIVTDIG--SQIFMTGTDKSVFDSLNE 360
            ++  ++ ++G  +Q+  T     + +  ++
Sbjct: 1155 SVAAMIGELGKEAQMICTTFRPEMLEHADQ 1184


>gi|55823212|ref|YP_141653.1| chromosome segregation SMC protein [Streptococcus thermophilus
           CNRZ1066]
 gi|55739197|gb|AAV62838.1| chromosome segregation SMC protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 1177

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 101/284 (35%), Gaps = 37/284 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKSIEMQGFKSFADKTKVVFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+      ++      ++  +G       +I++E            I+   +R
Sbjct: 61  MPDVIFAGTEVRKALNYAEVAVTLDNSDGFIAGVGETIRVERHIYRNGDNDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    +RR   +     +   ++ R  + E
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNAKPEDRRAIFEEAAGILK--YKIRKKETE 178

Query: 164 RLMRGRNRLLTE----GYFDSSWCSSIEAQMAELGVKIN---IARVEMINALSSLIM--- 213
             +      L       Y        +E Q A     +      R  ++N L   I    
Sbjct: 179 SKLNQTQDNLDRLEDIIYELDGQVKPLEKQAATAKCYLELNGERRQTLLNLLVHDIEVGK 238

Query: 214 --EYVQKENFPHIKLSLTGFLDG--KFDQSFCALKEEYAKKLFD 253
                 +E+   +K  LT + +   + +     LK++  + L  
Sbjct: 239 SDLTQTQEDLAEVKDKLTSYYEERHRLETENQELKQKRHQILEQ 282


>gi|145220266|ref|YP_001130975.1| chromosome segregation protein SMC [Prosthecochloris vibrioformis
           DSM 265]
 gi|145206430|gb|ABP37473.1| chromosome segregation protein SMC [Chlorobium phaeovibrioides DSM
           265]
          Length = 1178

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 98/266 (36%), Gaps = 33/266 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           + +  + +  F+++A+ +R+ FD   T  VG NG GKTN+++AI   L   +    R A 
Sbjct: 1   MYLSKIELFGFKSFANRVRISFDKGLTAIVGPNGCGKTNVVDAIRWVLGEQKSSLLRSAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             ++   GS      SF      +E    +        T   R  R       +N V  R
Sbjct: 61  MENIIFNGSRNLKPLSFTEVSLTIENTRNILPTQYTEVTVTRRIYRNGESDFLLNQVPCR 120

Query: 112 VVDELNKHLRISWLVPSMD--------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D L+          +           I S  S ER +  +             +  ++
Sbjct: 121 LKDILDLFTDTGMGSDAYSVIELKMIEEIISNKSEERMKLFEEAAG---------ITRYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           +  +   R L     D    + ++  ++E+  K+   ++++  A     ++  ++E    
Sbjct: 172 QRRKQTFRQLESASRD---LARVDDLLSEVEKKVRSLKLQVRKAEKLRELKTHRRELDLQ 228

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAK 249
           +       L  K +    ++++E  +
Sbjct: 229 LSWHTMESLQEKIEPLNRSIEQEELQ 254



 Score = 37.6 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 69/185 (37%), Gaps = 24/185 (12%)

Query: 180  SSWCSSIEAQMAELGVKINIARVEM------INALSSLIMEYVQKENFPHIKLS-LTGFL 232
            +   +S+EAQ  + G    +A  E       ++ L+    +    E      +  +    
Sbjct: 964  TETLASLEAQCDQFGAVNELALDEYQAEKERLDFLTEQKNDLYAAETQLRETIEEINRTA 1023

Query: 233  DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD--------KAITI 284
              KF+ +F A+++ +     +    +  +   L+     D +  + +        K ++I
Sbjct: 1024 LEKFEATFHAVRKNFTTIFQELFDPEDEA--DLLIHTADDPLESHIEIVAKPKGKKPLSI 1081

Query: 285  AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--G 342
               S GE+ +  + +  +   +       +P  +LDE+ A LD+       +++      
Sbjct: 1082 EQLSGGEKALTALSLLFSIYLV-----KPSPFCILDEVDAPLDDGNVGRFIKLLKKFENN 1136

Query: 343  SQIFM 347
            +Q  +
Sbjct: 1137 TQFII 1141


>gi|321478769|gb|EFX89726.1| structural maintenance of chromosome protein 2 [Daphnia pulex]
          Length = 1195

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 85/272 (31%), Gaps = 36/272 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF-RRA 59
           + IK + +  F++Y     +  FD       G NG GK+NIL+AI FL         R  
Sbjct: 1   MYIKSMVVDGFKSYGQRTEINGFDPMFNAITGLNGSGKSNILDAICFLLGITNLSHVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          V            G E   ++++  +       + L IN 
Sbjct: 61  NLQELVYKSGQAGVTKATVTVTFDNKDKKQSPIGYEHYDEVTVTRQVVIGGKNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMID 161
             ++     +    +   V +   +           M+    L  +  A   R       
Sbjct: 120 SNVQNNRVQDFFRSVQLNVNNPHFLIMQGRITKVLNMKPPEILAMIEEAAGTRMYEAKKQ 179

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             + ++    +  +          +  ++     K+   R + +            +   
Sbjct: 180 --QALK---TIEKKEEKIKEINDILSEEVTPTLNKLREERTQYL-------QFQKSEREL 227

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
            H+      +     +++   +KEEY + L +
Sbjct: 228 EHLNRQYVAYRFLSLEKANAQVKEEYNEILKE 259


>gi|289434649|ref|YP_003464521.1| DNA repair protein RecN [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170893|emb|CBH27435.1| DNA repair protein RecN [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 563

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG       D  R
Sbjct: 2   LQEMTIKNFAIIESLSLSFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----STDFIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G               +F    A +E      D  + LE    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFALAEDNFACRNALLENGIDATDDMVVLERSLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    +     +++    +++ + + 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPALTKYQANFKEYQTISKE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197


>gi|269797768|ref|YP_003311668.1| chromosome segregation protein SMC [Veillonella parvula DSM 2008]
 gi|269094397|gb|ACZ24388.1| chromosome segregation protein SMC [Veillonella parvula DSM 2008]
          Length = 1184

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +  F+++A   +  F    T  +G NG GK+NI +A+ ++   S  R  R   
Sbjct: 1   MQLLRLELKGFKSFADKTIVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+      S        +  +   DI    + +  R  R+      IN    R
Sbjct: 61  AEDIIFSGTEKRKPMSAAEVTLVFDNSDQQLDIDMAEVAITRRIYRTGESEFLINKRSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141
           + D         L +          +D I +    ERR
Sbjct: 121 LKDIHLLLADTGLGRDSMAIIGQNRIDAILNSKPEERR 158


>gi|166363552|ref|YP_001655825.1| exonuclease SbcC-like protein [Microcystis aeruginosa NIES-843]
 gi|166085925|dbj|BAG00633.1| exonuclease SbcC homolog [Microcystis aeruginosa NIES-843]
          Length = 1007

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 9   FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            L +  F +Y    L F   HT    G NG GK+++LEAI++   G   R +   DV   
Sbjct: 5   QLTLKNFLSYREAVLDFRGLHTACICGANGAGKSSLLEAITWAIWGES-RTSIADDVIHA 63

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD---------ELNK 118
           GS      F    G E    I  +        +    IND   R +          ++N 
Sbjct: 64  GSDYARVDFEFSYGGEIYKIIRSRHRGGKASGLDFQVINDQSFRPLSGKSIKDTQAQINT 123

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFA---IDPRHRRRMIDFER--LMRGRNRLL 173
           +L+I        + F   +  R+   D  +        +    ++  +R  ++  + + +
Sbjct: 124 YLKI------DHKTFINSAYLRQGQADEFMKQPPSGRKQILAELLQLDRYEILANKAKDI 177

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
           ++ +   S     + +  +L ++   +  + +  LS+ I +  Q++   + +L       
Sbjct: 178 SKQFDGQSLQIEQQVETIKLRLQEKNSYQQQLQELSTQINQINQEQEVNNRRLQQL---- 233

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMS 261
               Q     ++ + K+L   R+ +   
Sbjct: 234 ----QGEENQRQNWEKQLQWQREQERAL 257


>gi|308456383|ref|XP_003090636.1| hypothetical protein CRE_25955 [Caenorhabditis remanei]
 gi|308262100|gb|EFP06053.1| hypothetical protein CRE_25955 [Caenorhabditis remanei]
          Length = 386

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 1  MTNRIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
          +  +  +  L I  F++Y    L    ++ T  +G NG GK+N+++AISF+   R    R
Sbjct: 10 LPGKGHLDTLEIENFKSYKGFHLIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPGSLR 69

Query: 58 RASYADVTRIGSP 70
             Y D+   G+P
Sbjct: 70 VKKYTDLI-HGAP 81


>gi|70944837|ref|XP_742306.1| chromosome segregation protein [Plasmodium chabaudi chabaudi]
 gi|56521210|emb|CAH75549.1| chromosome segregation protein, putative [Plasmodium chabaudi
           chabaudi]
          Length = 634

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           + I+ + +  F++Y    +  F  Q     G NG GK+N+L+AI F+         R   
Sbjct: 1   MHIEEIILDGFKSYTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVNR 60

Query: 61  YADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
             ++  + G          ++         ++   RD +++   +
Sbjct: 61  LDELIYKQGQAGITKGSVTIKFNNEEKPSPLQEPYRDMKTITITR 105


>gi|332705175|ref|ZP_08425257.1| exonuclease SbcC [Lyngbya majuscula 3L]
 gi|332356125|gb|EGJ35583.1| exonuclease SbcC [Lyngbya majuscula 3L]
          Length = 1006

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 62/195 (31%), Gaps = 28/195 (14%)

Query: 9   FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            L +  F +Y    L F   HT    G NG GK+++LEAI++   G+  R AS  D+   
Sbjct: 5   QLTLKNFLSYRDATLDFRGLHTACICGQNGAGKSSLLEAITWAIWGQS-RVASENDIIHT 63

Query: 68  GSPSFFSTFAR---------VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           G+      F           +         S++ +       + L    V    +  +  
Sbjct: 64  GAKEVRVDFIFQNNQQTHRIIRTRHRKQGTSLEFQVETPNGFKSLTQKGVRATQLLIIAN 123

Query: 119 H-LRISWLVPSM-------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
             L     + S        D        ER++ L  ++         ++  +E+L     
Sbjct: 124 LKLDYDTFINSSYLRQGRADEFMVRRPSERKQILADLL---------KLDQYEKLADQAK 174

Query: 171 RLLTEGYFDSSWCSS 185
            L  +          
Sbjct: 175 DLSKQLKGQVEQLEQ 189


>gi|183220805|ref|YP_001838801.1| chromosome segregation ATPase [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Paris)']
 gi|189910905|ref|YP_001962460.1| chromosome segregation ATPase [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167775581|gb|ABZ93882.1| Chromosome segregation ATPase [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167779227|gb|ABZ97525.1| Chromosome segregation ATPase [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Paris)']
          Length = 927

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K LNI  F+ +A    + FD   T  VG NG GK+NI++++ ++      +G R   
Sbjct: 1  MHLKSLNIVGFKTFADETEINFDPGFTAVVGPNGSGKSNIVDSVKWVFGEKSAKGLRGEK 60

Query: 61 YADVTRIGSPS 71
            DV   G+ S
Sbjct: 61 MDDVIFHGTES 71


>gi|156230203|gb|AAI52522.1| Smc2 protein [Danio rerio]
          Length = 449

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 42/286 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++Y     +  FD       G NG GK+NIL++I FL   S     R  
Sbjct: 1   MYIKSIVLEGFKSYAERTEINGFDPFFNAITGLNGSGKSNILDSICFLLGISNLSQVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I+I  +       + L IN 
Sbjct: 61  NLQDLVYKNGLAGITKATVSITFDNSNKKQSPLGFETHDEITITRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V    +   +    +   V +   +     +   + L+     ++  I+     RM + +
Sbjct: 120 VNANNLRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     +          ++ ++     K+   R   +           QK     
Sbjct: 178 KISAQKTIEKKDAKLKEIQT-ILDEEITPAMEKLKEERASYLE---------YQKLMREI 227

Query: 224 IKLS--LTGFLDGKFDQSFCALKEEYAK------KLFDGRKMDSMS 261
             LS     +L    +++     EE  +      KL +  K +   
Sbjct: 228 EHLSRLYVAYLFVCAEETKLKSNEELQEMQSSIAKLQENMKQNEAK 273


>gi|320103298|ref|YP_004178889.1| SMC domain-containing protein [Isosphaera pallida ATCC 43644]
 gi|319750580|gb|ADV62340.1| SMC domain protein [Isosphaera pallida ATCC 43644]
          Length = 403

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 60/369 (16%), Positives = 119/369 (32%), Gaps = 54/369 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-----RGF---RR 58
           I  +++  F++     L      T+ VG NG GK+++L  + FL        +G+   R+
Sbjct: 9   IHSIHVENFKSLVDCDLKLAP-LTLLVGLNGEGKSSVLHLLDFLGQLMRGDIKGWLDRRK 67

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            +  D+     P+      R++            E                +   DE  +
Sbjct: 68  WTSGDLISKFKPNHPMIKFRLDIEVDRQRFLWSGEYDHREHACLT----ETVDFTDEHGE 123

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           H  I    P      +      R    +++F                      +L++  F
Sbjct: 124 HDEIKLTDP------TETEQTSRCLFPKVIFQYQ-----------------GSILSQIRF 160

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D          +    + +   RV  ++ LS   M    +E+   I       L   F +
Sbjct: 161 DPEPDHEKLRILKPFVMAM--KRVRSLDLLSPSAMRRRARESDGSIGPEGE-QLSAFFHE 217

Query: 239 SFCALKEEYAKKLFD--GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST----GEQ 292
                +E+  K+L +  GRK+   +     G  + +++  +      I   S     G  
Sbjct: 218 LSQETREKLEKQLSEVYGRKIKIETSVMKAGWKKLEVLETFTALNDPITIESRHVNDGLL 277

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           +++ +   LA             + + DEI   ++ +    L     D G QI +T    
Sbjct: 278 RLLAI---LAELET------DNTLPMFDEIENGINSELIAFLLERFRDSGKQILVTTHSP 328

Query: 353 SVFDSLNET 361
            + + L + 
Sbjct: 329 MILNHLEDD 337


>gi|317131323|ref|YP_004090637.1| chromosome segregation protein SMC [Ethanoligenens harbinense
           YUAN-3]
 gi|315469302|gb|ADU25906.1| chromosome segregation protein SMC [Ethanoligenens harbinense
           YUAN-3]
          Length = 1193

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 92/294 (31%), Gaps = 42/294 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K L I  F+++     L F    T  VG NG GK+NI +AI ++      +  R   
Sbjct: 1   MYLKSLTIQGFKSFPDKTVLTFGPGITAVVGPNGSGKSNISDAIRWVLGEMSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+P      +      V+  +    +  +  T   R  R      ++    +R
Sbjct: 61  MEDVIFGGTPVRRPLGYAEVSLTVDNSDHALPVESEEVTVTRRYYRSGESEYRLGGAQVR 120

Query: 112 VVDEL-------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
           + D           H   + +         G   E RR +      I          F +
Sbjct: 121 LRDIYELFMDTGLGHDGYAVISQGRIAEIVGARSEDRREIFEEAAGI------AKFRFRK 174

Query: 165 LMRGRNRLLTEGY--FDSSWCSSIEAQMAELGVKINIARVEM--------------INAL 208
               R    TE          S +EA++  L  +   A+  +              ++ L
Sbjct: 175 AEAERRLASTEENLVRLRDILSELEARVGPLKEQAEKAKRYLTLAEEKRTLEVGLWLHLL 234

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
                E    EN   I  +    L+ K D     + E Y +      + D +  
Sbjct: 235 DVRREELRAGENKLEIARARHDELERKLDTVERTIDEAYMQGQKAAAEADRLRG 288


>gi|194014505|ref|ZP_03053122.1| chromosome segregation protein SMC [Bacillus pumilus ATCC 7061]
 gi|194013531|gb|EDW23096.1| chromosome segregation protein SMC [Bacillus pumilus ATCC 7061]
          Length = 1186

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 56/282 (19%), Positives = 106/282 (37%), Gaps = 44/282 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L++  F+++A  + + F    T  VG NG GK+NI +AI ++      +  R   
Sbjct: 1   MFLKRLDVIGFKSFAQRVTVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS S            ++  +    I    + +  R  RS      IN+  +R
Sbjct: 61  MEDIIFAGSDSRKRVNLAEVTLTLDNEDHFLPIDFHEVSVTRRVYRSGESEFLINNQSVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ I S  + ERR   +             +    
Sbjct: 121 LKDIIELFMDSGLGKEAFSIISQGKVEEILSSKAEERRSIFEEA--------AGVLKYKT 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
           R  +  N+L           + +E  + EL  ++   R++     +S+  +Y+Q KE   
Sbjct: 173 RKKKAENKLFET----QDNLNRVEDILHELEDQVEPLRMQ-----ASIAKDYLQKKEELE 223

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
           +++++LT        + +  L E       +  K D M + T
Sbjct: 224 NVEIALTVHDIEALHEKWTTLGEA-----VERFKQDEMKQST 260


>gi|154505347|ref|ZP_02042085.1| hypothetical protein RUMGNA_02862 [Ruminococcus gnavus ATCC 29149]
 gi|153794390|gb|EDN76810.1| hypothetical protein RUMGNA_02862 [Ruminococcus gnavus ATCC 29149]
          Length = 1185

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 101/287 (35%), Gaps = 36/287 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++A+ ++  F    T  VG NG GK+N+ +A+ ++      +  R  S
Sbjct: 1   MYLKCIEVQGFKSFANRIKFEFHNGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGGS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+      S+ S    ++  +    +     T   +  R       IN    R
Sbjct: 61  MQDVIFSGTENRKPLSYASVAITLDNSDHQLPVDYSEVTVTRKLYRSGESEYLINGTGCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +D+I SG   ERR   D     +  + R+ +   +
Sbjct: 121 LKDINEMFYDTGIGKEGYSIIGQGQIDKILSGKPEERRELFDEAAGIVKFKRRKTLS-LK 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL------GVKINIARVEM----INALSSLIM 213
           +L   +N L       S   S +E Q+  L        +    + E+    I+       
Sbjct: 180 KLEEEQNNLTRV----SDILSELEKQIGPLEKQSAVAKEYLKKKEELKVYDIHMFLLETE 235

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
               +      K+ +T          +   KE+Y        ++D+ 
Sbjct: 236 RLKDQLQGLEEKVRITSDEMEAAKSRYEETKEQYQAVEIQVEEIDAA 282



 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 98/287 (34%), Gaps = 35/287 (12%)

Query: 80   EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME 139
            E  E  ++I  ++  + +      Q +   +   + L+ H+        +D+    L  +
Sbjct: 877  ESTEIFSEIETEITGQTENREALNQKHKAFLEQREALSGHMA------ELDKELFRLESQ 930

Query: 140  RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG----- 194
            +    +     ++       I +   ++ R+  LT+  F       ++ ++ +LG     
Sbjct: 931  KEDCEEASEKQMNYMWEEYEITYNGALKLRDETLTDRAFMKKQILFLKGEIRKLGNVNVN 990

Query: 195  ----VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
                 K    R E +      ++E   KE    I   L   +  +F++ F  + +E+   
Sbjct: 991  AIEDYKQVAERYEFLKEQHEDLVE--AKETLIQIVAELDAAMRAQFEEQFARISKEFDAV 1048

Query: 251  LFDGRKMDSMSRRTLIGPHRSDLI---VDYCDKAITIAH-----GSTGEQKVVLVGIFLA 302
                       + TL      D++   +    +            S GE+ +  + +  A
Sbjct: 1049 FKQLF---GGGKGTLELMEDEDILEAGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA 1105

Query: 303  HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
                       +P  LLDEI A LD+   +   + +  +   +Q  +
Sbjct: 1106 -----IQNLKPSPFCLLDEIEAALDDSNVDRFAQYLHKLTKHTQFIV 1147


>gi|317150906|ref|XP_001823906.2| structural maintenance of chromosomes 5 smc5 [Aspergillus oryzae
           RIB40]
          Length = 1201

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 14/217 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + +++F  Y S       +  + +G NG GK+ ++ AI   L  G     R     
Sbjct: 122 AIVRIKVTDFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPAHLGRAKDPG 181

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL------ 116
           +  + G            G     +  +    + D +     IN         L      
Sbjct: 182 EFVKHGCREATIEIELAGGPHFRRNPVVTRTIKRDGNKSSFTINGKTASRTQVLKLAQSF 241

Query: 117 -NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT- 174
             +   +   +P   ++    ++     L+    A          D  + +R R + L  
Sbjct: 242 SIQIDNLCQFLPQD-KVSEFAALTPIELLNSTQRAAAGAEMIEWHDNLKQLRARQKKLQA 300

Query: 175 EGYFDSSWCSSIEA--QMAELGVKINIARVEMINALS 209
           +   D    +++E   +M    V+    R E+   + 
Sbjct: 301 DNKSDKDLLTNLEERQEMQRADVERMRQRAEIKRKIE 337


>gi|289597054|ref|YP_003483750.1| chromosome segregation protein SMC [Aciduliprofundum boonei T469]
 gi|289534841|gb|ADD09188.1| chromosome segregation protein SMC [Aciduliprofundum boonei T469]
          Length = 1184

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 26/171 (15%)

Query: 3   NRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RR 58
           + + +K + +  F+++    RL F    T   G NG GK+NI +AI F+   +     R 
Sbjct: 5   DGMYLKAIELENFKSFGRKTRLEFKEGFTAISGPNGSGKSNITDAILFVLGPKSSKKIRA 64

Query: 59  ASYADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ------------- 104
               D+   G  +   + + RV  +    D  + L+  + +  R ++             
Sbjct: 65  QRLTDLIYNGGKNGRPADYCRVSLIFDNRDRVLPLDEDEVKLTRYIKRANNELGYNSYFY 124

Query: 105 INDVVIRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFLDRM 147
           IND   R+ D  +  +                + RI     +ERR  LD +
Sbjct: 125 INDEQARLQDFNSILIHAKIEADGYNFVQQGDVTRIVEMTPVERRTILDDI 175


>gi|284051594|ref|ZP_06381804.1| exonuclease SbcC [Arthrospira platensis str. Paraca]
          Length = 631

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 8  KFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          + L +  F +Y    L F   HT    G NG GK+++LEAI++   G+  R  +  D+ +
Sbjct: 4  QKLTLKNFLSYRDASLDFSGLHTACICGPNGAGKSSLLEAIAWSIWGQS-RAGTEDDLIQ 62

Query: 67 IGSPSFFSTFARV 79
          IG       F  +
Sbjct: 63 IGETQMRVDFIFI 75


>gi|223993035|ref|XP_002286201.1| chromosomal protein,like chromosomal protein xcap-e [Thalassiosira
           pseudonana CCMP1335]
 gi|220977516|gb|EED95842.1| chromosomal protein,like chromosomal protein xcap-e [Thalassiosira
           pseudonana CCMP1335]
          Length = 1217

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 20/145 (13%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA   +   FD       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MHIKEIVVDGFKSYAHRTVIAGFDPHFNAITGLNGSGKSNILDSICFVLGITNLSQVRAG 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           + +++  + G          +            G E   ++++  +       + L IN 
Sbjct: 61  NLSELVYKQGQAGVNKASVTIVFDNEDESSSPVGYEQCKEVNVTRQVLIGGKSKYL-ING 119

Query: 108 --VVIRVVDELNKHLRISWLVPSMD 130
                  V  L   ++++   P   
Sbjct: 120 RNSPAGQVANLFHSVQLNVNNPHFL 144


>gi|191638621|ref|YP_001987787.1| DNA repair and genetic recombination protein N [Lactobacillus casei
           BL23]
 gi|239631994|ref|ZP_04675025.1| DNA repair ATPase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301066679|ref|YP_003788702.1| DNA repair ATPase [Lactobacillus casei str. Zhang]
 gi|190712923|emb|CAQ66929.1| DNA repair and genetic recombination protein N [Lactobacillus casei
           BL23]
 gi|239526459|gb|EEQ65460.1| DNA repair ATPase [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439086|gb|ADK18852.1| DNA repair ATPase [Lactobacillus casei str. Zhang]
 gi|327382663|gb|AEA54139.1| DNA repair protein recN [Lactobacillus casei LC2W]
 gi|327385857|gb|AEA57331.1| DNA repair protein recN [Lactobacillus casei BD-II]
          Length = 566

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 84/249 (33%), Gaps = 37/249 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           ++ L I +F     L L F    T   G+ G GK+ I++A+  L+ GRG     R  +  
Sbjct: 2   LQELAIHDFAIIDHLALSFQPGMTALTGETGAGKSIIIDAVGLLAGGRGSVDFIRTGTTK 61

Query: 63  DVTR--IGSPSFFSTFARVEG---MEGLADISIKLETRDDRSVRCL-QINDVVIRV---- 112
                   +    +T A+++    M+   + ++ L+    R+ R + ++N  ++      
Sbjct: 62  ASLEGLFDAQENPATEAKLQAYGVMDPDQNDTVLLQREIFRTGRNVCRVNGHLVNTTTLK 121

Query: 113 ------VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
                 VD   ++     + P               F    +  +  ++     D++R +
Sbjct: 122 AIGETLVDIHGQNEHQQLMHPETHLGLLDS------FAGDDLLKLRQQYADVYHDYQRTL 175

Query: 167 ---RGRNRLLTEGYFDSSWC--SSIEAQMAEL----GVKINIARVEM--INALSSLIMEY 215
              + +     E             E Q A L       +   R  +     ++S + E 
Sbjct: 176 RAVKQKQANEQEWAQRLDMLKFQVGEIQSANLQPHEDTDLTAERERLANFQKINSALQES 235

Query: 216 VQKENFPHI 224
               +   +
Sbjct: 236 YALLSDEEV 244


>gi|317052010|ref|YP_004113126.1| chromosome segregation protein SMC [Desulfurispirillum indicum S5]
 gi|316947094|gb|ADU66570.1| chromosome segregation protein SMC [Desulfurispirillum indicum S5]
          Length = 1150

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 101/314 (32%), Gaps = 62/314 (19%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +K K L IS F++++    L F    T  VG NG GK+NI +AI ++      +  R AS
Sbjct: 1   MKFKRLEISGFKSFSERSVLDFRDGITAIVGPNGCGKSNISDAIRWVMGEQRAKDLRGAS 60

Query: 61  YADVTRIG-------------------------SPSFFSTFARVEGMEGLADISIKLETR 95
            ADV   G                         S        R   M G+++  I     
Sbjct: 61  MADVIFAGTQRRSPAQMAEVKLKLESDSFPYPYSEFHEVEVIRRLTMNGVSEYRINGAAS 120

Query: 96  DDRSVRCLQIN---DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRF--------- 143
             + VR L ++         + E  K  +I    P   R     +    +F         
Sbjct: 121 RLKDVRGLFMDSGVGTRAMSIIEQGKIHQIVTSRPEDRRGVIEEAAGINKFKESKKEALA 180

Query: 144 -----------LDRMVFAIDPRHRRRMIDFERLMRGR----------NRLLTEGYFDSSW 182
                      +  +   ++ ++        + ++ R           ++L++ YF++S 
Sbjct: 181 KLEDVNNNLLRVQDVTQEVEKQYHYLKKQAAKALQHRELTSRIYELEVQVLSKQYFEASN 240

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             +   + +    +    + + +  L   +    Q       KL+        F Q    
Sbjct: 241 LLTEALEQSRHVQEQLEEQKKHMAELQEQLQREHQHIAQMEAKLTYHTRQRESFLQEKAL 300

Query: 243 LKEEYAKKLFDGRK 256
           L+++        R+
Sbjct: 301 LEQKQQSIQESMRQ 314


>gi|308460454|ref|XP_003092531.1| CRE-HIM-1 protein [Caenorhabditis remanei]
 gi|308253107|gb|EFO97059.1| CRE-HIM-1 protein [Caenorhabditis remanei]
          Length = 1203

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 1  MTNRIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
          +  +  +  L I  F++Y    L    ++ T  +G NG GK+N+++AISF+   R    R
Sbjct: 10 LPGKGHLDTLEIENFKSYKGFHLIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPGSLR 69

Query: 58 RASYADVTRIGSP 70
             Y D+   G+P
Sbjct: 70 VKKYTDLI-HGAP 81


>gi|288560414|ref|YP_003423900.1| RecF/RecN/SMC N terminal domain-containing protein
          [Methanobrevibacter ruminantium M1]
 gi|288543124|gb|ADC47008.1| RecF/RecN/SMC N terminal domain-containing protein
          [Methanobrevibacter ruminantium M1]
          Length = 566

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +  + I  FR+     + F+    + +G+N  GKT++++++  L   +
Sbjct: 2  LINIKIKNFRSLKDFEMNFNPGLNVIIGENDAGKTSLIDSLKILFGLK 49


>gi|294793532|ref|ZP_06758669.1| putative cell division protein Smc [Veillonella sp. 3_1_44]
 gi|294455102|gb|EFG23474.1| putative cell division protein Smc [Veillonella sp. 3_1_44]
          Length = 1184

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +  F+++A   +  F    T  +G NG GK+NI +A+ ++   S  R  R   
Sbjct: 1   MQLLRLELKGFKSFADKTIVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+      S        +  +   DI    + +  R  R+      IN    R
Sbjct: 61  AEDIIFSGTEKRKPMSAAEVTLVFDNSDQQLDIDMAEVAITRRIYRTGESEFLINKRSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141
           + D         L +          +D I +    ERR
Sbjct: 121 LKDIHLLLADTGLGRDSMAIIGQNRIDAILNSKPEERR 158


>gi|282849042|ref|ZP_06258431.1| chromosome segregation protein SMC [Veillonella parvula ATCC 17745]
 gi|282581317|gb|EFB86711.1| chromosome segregation protein SMC [Veillonella parvula ATCC 17745]
          Length = 1184

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +  F+++A   +  F    T  +G NG GK+NI +A+ ++   S  R  R   
Sbjct: 1   MQLLRLELKGFKSFADKTIVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+      S        +  +   DI    + +  R  R+      IN    R
Sbjct: 61  AEDIIFSGTEKRKPMSAAEVTLVFDNSDQQLDIDMAEVAITRRIYRTGESEFLINKRSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141
           + D         L +          +D I +    ERR
Sbjct: 121 LKDIHLLLADTGLGRDSMAIIGQNRIDAILNSKPEERR 158


>gi|222617555|gb|EEE53687.1| hypothetical protein OsJ_37035 [Oryza sativa Japonica Group]
          Length = 1221

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          +I  L +  F++Y  +  +      T  +G NG GK+N+++AISF+   R    R A   
Sbjct: 15 RIHRLEVENFKSYKGTQTIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRSAHLRGAQLK 74

Query: 63 DVT 65
          D+ 
Sbjct: 75 DLI 77


>gi|156408029|ref|XP_001641659.1| predicted protein [Nematostella vectensis]
 gi|156228799|gb|EDO49596.1| predicted protein [Nematostella vectensis]
          Length = 1216

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 7/109 (6%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYAD 63
           ++ L +  F++Y  +  +    + T  +G NG GK+N+++AISF+        R  +  D
Sbjct: 4   LERLELENFKSYKGNHTIGPFYRFTAIIGPNGCGKSNLMDAISFVFGERTSSLRVKTVKD 63

Query: 64  VTRIGSPSF--FSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVV 109
           +   G+P     ++ A+V  +    D   I+   +   S    +I++ V
Sbjct: 64  LI-HGAPVGKPVASSAKVTAVYAEEDGTEIRFTRKIVGSGTESRIDNKV 111


>gi|15615050|ref|NP_243353.1| chromosome segregation SMC protein [Bacillus halodurans C-125]
 gi|10175107|dbj|BAB06206.1| chromosome segregation SMC protein [Bacillus halodurans C-125]
          Length = 1188

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L I  F+++   + + F    T  VG NG GK+NI + I ++      +  R + 
Sbjct: 1   MFLKRLEIVGFKSFAEQMTVEFVKGVTAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   GS      +F      ++  +    I     +   R  R       +N    R
Sbjct: 61  MQDIIFAGSDTRKPLNFAEISLVLDNEDQHIPIDYSEVSVTRRVYRSGESEYLLNRQPCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123



 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 13/163 (7%)

Query: 196  KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLF 252
            +    R E +    + ++E   KE   ++   +   +  +F  SF  ++  +    K+LF
Sbjct: 996  ERVSERYEFLKDQQADLVE--AKETLHNVIEEMDEEMTKRFHDSFTEIQAHFRVVFKELF 1053

Query: 253  DGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
             G + D +      L+      +      K   +   S GE+ +  + +  +  R     
Sbjct: 1054 GGGEADLVLTEPDQLLTTGVDIMARPPGKKRQHLGLLSGGERALTAIALLFSILRF---- 1109

Query: 311  TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDK 352
                P  +LDE+ A LDE   +   + + D   Q  F+  T +
Sbjct: 1110 -RPVPFCVLDEVEAALDEANVSRFAKFLKDFSDQTQFIVITHR 1151


>gi|330502844|ref|YP_004379713.1| condensin subunit Smc [Pseudomonas mendocina NK-01]
 gi|328917130|gb|AEB57961.1| condensin subunit Smc [Pseudomonas mendocina NK-01]
          Length = 1162

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 102/324 (31%), Gaps = 44/324 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVSFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLAD----------ISIKLETRDDR-SVRCLQINDV 108
             DV   GS +    T A +E +   +D            I +  R  R       +N  
Sbjct: 61  MTDVIFNGSNTRKPVTQASIELIFDNSDNSLVGEYAAFAEISIRRRVTRDGQNTYFLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               E R F++             +
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEELRNFIEE---------AAGI 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             ++   R     +     + +  + +  ++     +++               E   K 
Sbjct: 171 SKYKERRRETENRIRRTQENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLKA 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY-- 277
               ++        G  +Q     +  +   + + R  D+   R   G H      +   
Sbjct: 231 QLLALRWQGLNQQVGSREQVIGDQEVAFEALVAEQRSADAAIERLRDGHHELSERFNLVQ 290

Query: 278 -----CDKAITIAHGS--TGEQKV 294
                    I     S   G+Q++
Sbjct: 291 GRFYSVGGDIARVEQSIQHGQQRL 314


>gi|323388484|gb|ADX60531.1| RecN [Geobacillus sp. NTU 03]
          Length = 573

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 90/270 (33%), Gaps = 39/270 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARV-------------EGMEGLADISIKLETRDDRSVRCL-QINDVVI-- 110
            G+         +             +     +D  I L      + + + +IN  ++  
Sbjct: 57  FGAEKAEIERLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRINGKLVTT 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ ++   L           +           LD             +  + R +  R 
Sbjct: 117 AVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RAVYERY 170

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
             L          S  E QMA         R++++       +E    E     +L    
Sbjct: 171 EELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDERLMEEK 218

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
                F + + AL++ Y     +GR +DS+
Sbjct: 219 VRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|313885017|ref|ZP_07818769.1| chromosome segregation protein SMC [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619708|gb|EFR31145.1| chromosome segregation protein SMC [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 1191

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 21/175 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +  + ++ F+++A    + FD   T  VG NG GK+N+ EAI ++      +  R + 
Sbjct: 1   MHLSRVEMTGFKSFADKTVIEFDQGMTAVVGPNGSGKSNLSEAIRWVLGEQSAKSLRGSK 60

Query: 61  YADVTRIG-SPSFFSTFARVEGMEGLADISIK--------LETRDDRSVRCLQINDVVIR 111
             DV   G         A+V  +    D  +           + +        IN+  +R
Sbjct: 61  MEDVIFNGTQDRKAVNIAKVTLVLNNEDHYLDSDYSEIAIARSYNRNGDSSYTINNETVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
           + D         L K+         +++IF     ERR   +        ++R+ 
Sbjct: 121 LKDIVDLLLDSGLGKNSFSIISQGQVEQIFLNKPEERRTIFEEAAGVQKYQYRKN 175


>gi|255527619|ref|ZP_05394481.1| ATP-binding protein [Clostridium carboxidivorans P7]
 gi|296187662|ref|ZP_06856056.1| hypothetical protein CLCAR_3159 [Clostridium carboxidivorans P7]
 gi|255508691|gb|EET85069.1| ATP-binding protein [Clostridium carboxidivorans P7]
 gi|296047619|gb|EFG87059.1| hypothetical protein CLCAR_3159 [Clostridium carboxidivorans P7]
          Length = 56

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          + IK + +  F  + + R+ F     I  G+NG GKT +L+AI 
Sbjct: 1  MSIKSIELRNFTVFKNFRVNFSKGINIITGENGTGKTQLLKAIY 44


>gi|260101400|ref|ZP_05751637.1| cell division protein Smc [Lactobacillus helveticus DSM 20075]
 gi|260084740|gb|EEW68860.1| cell division protein Smc [Lactobacillus helveticus DSM 20075]
          Length = 1189

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +  L +  F+++A    + F+   T  VG NG GK+NI EAI ++   +  +  R  +
Sbjct: 1  MPLTELVLDGFKSFADRTTIHFNDGITGIVGPNGSGKSNITEAIRWVMGEASAKSLRGMN 60

Query: 61 YADVTRIGSP 70
            DV   GS 
Sbjct: 61 MKDVIFAGSQ 70


>gi|169622619|ref|XP_001804718.1| hypothetical protein SNOG_14536 [Phaeosphaeria nodorum SN15]
 gi|160704810|gb|EAT78076.2| hypothetical protein SNOG_14536 [Phaeosphaeria nodorum SN15]
          Length = 990

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 88/260 (33%), Gaps = 20/260 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +  L +         +G NG GK+ +L A++    G+     R  +   
Sbjct: 28  IEEIQCINFMCHEHLTVTLGPLINFIIGHNGSGKSAVLTALTICLGGKATATNRAQNLKS 87

Query: 64  VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRC-LQINDVVIRVV--- 113
           + + G     S   R++    LA        SI +E   +RS     ++ D   R +   
Sbjct: 88  LIKEG-KDHSSVQVRIKNQGALAYKPDQYGDSITVERHFNRSGTSGFKLRDQNGRELQLE 146

Query: 114 ---DELNKHLRISWLVPSMDRIFSGL-SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
               +  +  +   L+ +   I  G     R++  D    A       RM   E  +   
Sbjct: 147 VLSKDYQQIEQSLELMNTRTEISKGDIGRLRKKMEDLAAKARRAESLERMRAKETTIAH- 205

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
             L        +  + +E+++ ++   +   R  ++   S       +  +   +++   
Sbjct: 206 QALWAAVQEAEAGVAEVESELEKVSA-VIERRKALVEEASQAYERSEEARDAATLRVQEA 264

Query: 230 GFLDGKFDQSFCALKEEYAK 249
             L     +    LKE + K
Sbjct: 265 TELMTPAKEEVHELKEAFTK 284


>gi|257075417|ref|ZP_05569778.1| hypothetical protein Faci_00065 [Ferroplasma acidarmanus fer1]
          Length = 641

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 12/114 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHT----IFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           + I  + I  FR Y ++ + F++ +     I +GDNG GKT  L AI++   G+    + 
Sbjct: 1   MYINNIIIKNFRLYKNVNIDFNSANNKNIAIIIGDNGKGKTTFLNAIAWCLYGKESNTSK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-INDVVIRVV 113
              +      S  +  A+ +  E    +SI +  +       ++ +N+   R  
Sbjct: 61  NIGL------SLINNIAKNDN-ENEIRVSIIMTDKQKNKFEIVRALNNTNNRPQ 107


>gi|150865365|ref|XP_001384551.2| Chromosome segregation and condensation [Scheffersomyces stipitis
           CBS 6054]
 gi|149386621|gb|ABN66522.2| Chromosome segregation and condensation [Scheffersomyces stipitis
           CBS 6054]
          Length = 1171

 Score = 56.8 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K+  L I  F++YA+  +   +D Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVDELIIDGFKSYATRTVISGWDGQFNAITGLNGSGKSNILDAICFVLGIASMATVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  + IS+  +     S + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNSEVSKSPIGFENCSTISVTRQIILGGSSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    LN    +   + + + +    
Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148


>gi|332531078|ref|ZP_08406995.1| hypothetical protein HGR_14019 [Hylemonella gracilis ATCC 19624]
 gi|332039463|gb|EGI75872.1| hypothetical protein HGR_14019 [Hylemonella gracilis ATCC 19624]
          Length = 562

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K+  + +  FR+  + + +        VG N  GKTN+L AI  L  G
Sbjct: 1  MKLAEIRVRNFRSIETEQRLPIPGSMTLVGPNNSGKTNLLRAIQLLFTG 49


>gi|329936102|ref|ZP_08285901.1| hypothetical protein SGM_1393 [Streptomyces griseoaurantiacus M045]
 gi|329304420|gb|EGG48299.1| hypothetical protein SGM_1393 [Streptomyces griseoaurantiacus M045]
          Length = 606

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 118/355 (33%), Gaps = 30/355 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +   +   FR+ A +  +  +  TI  G N  GK+ +L A++FL      R  +  D 
Sbjct: 1   MYLTRFSACGFRSLAHVENIPVSSPTILAGHNDGGKSAVLTALAFL--LGNHR-LTDEDR 57

Query: 65  TRIGSPSFFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           T   +       AR  VEG +   D + +  T    +VR  +I +       +       
Sbjct: 58  TYEQAEGSVGRCARTWVEG-DFRLDTTEQAATGLPTAVRIRRIAEEGQPPQWQYFGSRPA 116

Query: 123 SWLVPSMDRIFSGL-SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
              +  + R+  G  +     F      A+     + +  +          + +      
Sbjct: 117 DSRLHDLSRLLKGELAELVSEFSLSPAGALKDDLLQALTAYAATAPQ----VEQWQSLPK 172

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF----PHIKLSLTGFLDGKFD 237
                  ++   G K       +  ALSS    Y++ E        I+  +T  L+ + D
Sbjct: 173 ELQERLPRLLPFGGKDERPDDAVRTALSSCYETYLEDETLQGRVKEIETEITQRLEKEAD 232

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS-TGEQKVVL 296
                +++   + +    K +   +    G  R+ L V   D        S  G  + + 
Sbjct: 233 SLCRHIRQHCREFVGVQVKPEVSFKG---GFKRAPLEVSKADGEPVDLTRSGQGSNRRIA 289

Query: 297 VGIF-----------LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
           + ++           LA A   +       I++ DE   HLD   +  +  I+  
Sbjct: 290 LAVWEWTSNLLESGELAAAGEGNQAEPTQTIVVYDEPDTHLDYRHQRTVMDIIRK 344


>gi|240103229|ref|YP_002959538.1| Chromosome segregation protein SMC (smc1) [Thermococcus
           gammatolerans EJ3]
 gi|239910783|gb|ACS33674.1| Chromosome segregation protein SMC (smc1) [Thermococcus
           gammatolerans EJ3]
          Length = 1192

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 97/282 (34%), Gaps = 40/282 (14%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
           I+ + +  F++Y    + +      T  VG NG GK+NI +A+ F+  G      R    
Sbjct: 4   IEKIEMKGFKSYGNRKVVVPLSKGFTAIVGANGSGKSNIGDAVLFVLGGLSAKAMRATRI 63

Query: 62  ADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-------VIRVV 113
           +D+   G+     + +A V       D    ++  +    R +  +              
Sbjct: 64  SDLIFAGNRAEPPAKYAEVAMYFNNEDRGFPIDEDEVVIKRRVYPDGRSTYWLNGKRATR 123

Query: 114 DELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDR--MVFAIDPRHRRRMIDF 162
            E+   L  + + P    +               ERR  +D    +   D +  + + + 
Sbjct: 124 SEILDLLSAAMISPEGYNLVLQGDITKFIKMSPTERRLIIDEISGIAEYDAKKEKALDEL 183

Query: 163 ERL--MRGRNRLLTEGYFDSSWCSSIEAQ------MAELGVKINIARVEMINALSSLIME 214
           ++      R  LL +          +E +        +L  K+  ARV ++      + E
Sbjct: 184 KKAEENLARVDLLIKEV--KKQLDKLEKERNDALRYLDLKEKVERARVALL------LGE 235

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             + E      ++    ++G+ ++    LK    + +   R+
Sbjct: 236 IKRLELLLEESMNKDSSIEGEIEKVEAELKALVKEIIAKERE 277



 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 17/173 (9%)

Query: 183  CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               +  +  E    +    +E+ +    ++ E   KE+       + G     F ++  A
Sbjct: 971  LEPVNMKAIEDFEVVERRYLELSSKREQVLAE---KESIEEFIAEIEGQKREVFMKTLEA 1027

Query: 243  LKEEYAKKLFDGRKMDSMSRRTLIGP-----HRSDLIVDYCDKAITIAHG-STGEQKVVL 296
            + + +++ LF        ++  L  P        ++      K +      S GE+ +  
Sbjct: 1028 IAKNFSE-LFAKLSPGGSAKLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKALTA 1086

Query: 297  VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFM 347
            +    A           AP  L DEI AHLD+     +  ++ +     Q  +
Sbjct: 1087 LAFVFA-----IQRYKPAPFYLFDEIDAHLDDANVKRVADLIKESSQSSQFIV 1134


>gi|113477327|ref|YP_723388.1| exonuclease SbcC [Trichodesmium erythraeum IMS101]
 gi|110168375|gb|ABG52915.1| exonuclease SbcC [Trichodesmium erythraeum IMS101]
          Length = 1016

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 11/117 (9%)

Query: 8   KFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           + L +  F +Y    L F   HT    G NG GK+++LEAI++   G   R A+  D+  
Sbjct: 4   QKLQLKNFLSYHQATLDFTGLHTACICGPNGAGKSSLLEAIAWAIWGNS-RAATEDDIIS 62

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           +G              + +  + G       +++ +       + L    V      
Sbjct: 63  LGEKETRVDFTFSTHGNIYRVIRGRRRGQSPTLEFQVNTGSQFKSLTQKGVRATQQS 119


>gi|317498508|ref|ZP_07956802.1| RecF/RecN/SMC N terminal domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|316894201|gb|EFV16389.1| RecF/RecN/SMC N terminal domain-containing protein [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 469

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/224 (17%), Positives = 84/224 (37%), Gaps = 28/224 (12%)

Query: 4   RIKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRA 59
            + +K + ++ F+++A  +   F+   T  VG NG GK+N+ +A+ ++      +  R +
Sbjct: 2   DMYLKSIEVNGFKSFAHKMIFKFEHGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGS 61

Query: 60  SYADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVI 110
              DV   G+              ++  +    I  +  T   R  R       IN    
Sbjct: 62  RMEDVIFSGTELRKPMGSAYVAITLDNSDHSLPIQFEEVTVARRVYRSGESEYLINGSAC 121

Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           R  D         + K          +++I SG   ERR   D     +   +++  ++ 
Sbjct: 122 RRKDIVELFFDTGIGKEGYSIIGQGQIEQILSGKPEERRELFDEAAGIVK--YKKNKLET 179

Query: 163 ERLMR-GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
           ++ +   R  L+      +   + +E Q+  L  +   AR  ++
Sbjct: 180 QKSLEIERENLVRV----TDILTELERQVGPLKKQSERAREYLL 219


>gi|157692274|ref|YP_001486736.1| chromosome segregation protein Smc [Bacillus pumilus SAFR-032]
 gi|157681032|gb|ABV62176.1| chromosome segregation protein Smc [Bacillus pumilus SAFR-032]
          Length = 1186

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 107/284 (37%), Gaps = 44/284 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L++  F+++A  + + F    T  VG NG GK+NI +AI ++      +  R   
Sbjct: 1   MFLKRLDVIGFKSFAQRVTVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS S            ++  +    I    + +  R  RS      IN+  +R
Sbjct: 61  MEDIIFAGSDSRKRVNLAEVTLTLDNEDHFLPIDFHEVSVTRRVYRSGESEFLINNQSVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ I S  + ERR   +             +    
Sbjct: 121 LKDIIDLFMDSGLGKEAFSIISQGKVEEILSSKAEERRSIFEEA--------AGVLKYKT 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
           R  +  N+L           + +E  + EL  ++   R++     +S+  +Y+Q KE   
Sbjct: 173 RKKKAENKLFET----QDNLNRVEDILHELEDQVEPLRMQ-----ASIAKDYLQKKEELE 223

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
           +++++LT        + +  L E       +  K D M + T I
Sbjct: 224 NVEIALTVHDIEALHEKWTTLGEA-----VERFKQDEMKQSTEI 262


>gi|282878675|ref|ZP_06287444.1| DNA repair protein RecN [Prevotella buccalis ATCC 35310]
 gi|281299220|gb|EFA91620.1| DNA repair protein RecN [Prevotella buccalis ATCC 35310]
          Length = 553

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 81/264 (30%), Gaps = 47/264 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L+I  F     L + F    ++  G+ G GK+ IL AI  L    +  +  R     
Sbjct: 2   LKQLHIQNFTLIDELDINFHPGFSVITGETGAGKSIILGAIGLLKGNRADTKLIRSGKEK 61

Query: 63  DVTRIGSP----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDEL 116
            +          +    F   +  +   D  ++ E       R   IND  +    + EL
Sbjct: 62  CLIEAHFDVSKYNLLHFFEENDIDDDATDCIVRREIYSSGKSRAF-INDTPVPLATMKEL 120

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDFERLMRGRNRLLT 174
            + L    +      +       + + +D +        +++    ++++          
Sbjct: 121 GEQL--IDIHSQHQNLLLNQEDFQLQVVDIITQDSKSLAQYQTCYQEYKKA--------- 169

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         Q+ EL   I  +R            E+++ +     +  L      
Sbjct: 170 ------------AEQLEELKADIAKSREN---------EEFLRFQYGELAQAQLVEGEQE 208

Query: 235 KFDQSFCALK--EEYAKKLFDGRK 256
             +Q    L+  EE    L+   +
Sbjct: 209 TIEQELATLEHAEEIKTALYQSEQ 232


>gi|27227803|emb|CAD59410.1| SMC2 protein [Oryza sativa]
          Length = 1175

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 103/314 (32%), Gaps = 38/314 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA   +V  FD       G NG GK+NIL++I F   ++  R  R A
Sbjct: 1   MHIKEICLEGFKSYAGRTVVSGFDPLFNAITGLNGSGKSNILDSICFVLGITDLRQVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  SLQELVYKQGQAGVTKATVSIVFDNSDRSRSPLGYEDSPEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
            + +          +   V +   +     +   + L+     ++  ++     RM + +
Sbjct: 120 HLAQPSRVQTLFHSVQLNVNNPHFLIMQGRIT--KVLNMKPPEILSMLEEAAGTRMYEMK 177

Query: 164 R--LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           +   ++    L  +          ++ ++     K+   R + +       M +   +  
Sbjct: 178 KEAALK---TLEKKQNKVDEINKLLDEEILPALEKLRKERCQYMK----WAMAHADLDRL 230

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               ++       +         ++   K+ +   +D  + +        D  +      
Sbjct: 231 KRFCIAYEFVQAERVRDGALNDVKQIRAKIVE---LDESTEKLKSEIQEMDKNISNLAAE 287

Query: 282 ITIAHGSTGEQKVV 295
                G  GE K +
Sbjct: 288 KEAKLG--GEMKTL 299


>gi|49481877|gb|AAT66650.1| DNA repair and genetic recombination protein [Geobacillus
           thermocatenulatus]
          Length = 573

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 91/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G+       A +EG+  L D           + ++  D                 +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   V+ ++   L           +           LD             +  +  +
Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARYRAV 166

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
            +       E        S  E QMA         R++++       +E    E     +
Sbjct: 167 YKR----YEELGNKLKKLSENEQQMA--------HRLDLLT-FQLREIEQAALEPGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + AL++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|15899044|ref|NP_343649.1| hypothetical protein SSO2277 [Sulfolobus solfataricus P2]
 gi|284175289|ref|ZP_06389258.1| hypothetical protein Ssol98_11675 [Sulfolobus solfataricus 98/2]
 gi|13815577|gb|AAK42439.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261600791|gb|ACX90394.1| conserved hypothetical protein [Sulfolobus solfataricus 98/2]
          Length = 495

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 15/110 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF----LSPGRGFRRAS 60
           ++I    +S FR+ + + L       I VG NG GKTN+L +I      LS G   R   
Sbjct: 1   MRITEFYVSNFRSLSEVNLKDLGGFNIVVGYNGYGKTNLLSSIFLFVKNLSAGIEKRSIE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDV 108
                   +  F   +   +G +    I I  K+E   + S + +  N  
Sbjct: 61  DR------NQEFILLW---QGYDVSKPIMIGGKVEFSPEESNKIVGKNQK 101


>gi|326204788|ref|ZP_08194642.1| chromosome segregation protein SMC [Clostridium papyrosolvens DSM
           2782]
 gi|325985000|gb|EGD45842.1| chromosome segregation protein SMC [Clostridium papyrosolvens DSM
           2782]
          Length = 1190

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + ++ L I  F+++A  + L F +  T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1   MYLRKLEIQGFKSFADKISLDFHSGITAVVGPNGSGKSNIGDAVRWVLGEQSAKTLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+       F      ++  +    +S    T   R  R       IN    R
Sbjct: 61  MEDVIFAGTEHRKPVGFAEVSLTIDNDDNYLPVSYSEVTITRRVYRSGESEYYINKTSCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|284996493|ref|YP_003418260.1| hypothetical protein LD85_0088 [Sulfolobus islandicus L.D.8.5]
 gi|284444388|gb|ADB85890.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
          Length = 495

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 15/110 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF----LSPGRGFRRAS 60
           ++I    +S FR+ + + L       + VG NG GKTN+L +I      LS G   R   
Sbjct: 1   MRITEFYVSNFRSLSEVNLKDLGGFNVVVGYNGYGKTNLLSSIFLFIKNLSAGIEKRSVE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDV 108
                   +  F   +   +G +    I I  K+E   + + + +  N  
Sbjct: 61  DR------NQEFILLW---QGYDVSKPIMIGGKVEFSPEEANKIVGKNQK 101


>gi|301168368|emb|CBW27958.1| chromosome partition protein [Bacteriovorax marinus SJ]
          Length = 1264

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 27/168 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+K L I  F+++     + FD   T  VG NG GK+NI++A+ ++   +     R  S
Sbjct: 39  VKLKRLVIQGFKSFKDRTTIHFDDGITGIVGPNGCGKSNIVDALFWVMGEQSAKHLRGKS 98

Query: 61  YADVTRIGS----PSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVV 113
             D+   GS    P  ++    V G +    I I  +      +   R L  N      +
Sbjct: 99  MKDLIFAGSSKYNPGAYAEATLVLGNDDGKHIHIGNKVSSPSEIQLTRKLYRNGETEYRI 158

Query: 114 DEL---NKHLRISWLV-------------PSMDRIFSGLSMERRRFLD 145
           +      K ++  ++                ++R+      ERR  ++
Sbjct: 159 NNYPARLKDIQEVFMDTGAGAKSYSIIAQGEINRLVQAKPEERRTMIE 206


>gi|300866185|ref|ZP_07110902.1| Exonuclease SbcC [Oscillatoria sp. PCC 6506]
 gi|300335819|emb|CBN56062.1| Exonuclease SbcC [Oscillatoria sp. PCC 6506]
          Length = 1044

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 8  KFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          + L +  F +Y    L F   HT    G NG GKT++LEAI++   G   R AS  D+  
Sbjct: 4  QQLTLKNFLSYRDATLDFRGLHTACICGPNGAGKTSLLEAIAWAIWGNC-RTASEDDIIH 62

Query: 67 IGSPSFFSTFA 77
          IG       F 
Sbjct: 63 IGETEVRVDFV 73


>gi|238618566|ref|YP_002913391.1| hypothetical protein M164_0087 [Sulfolobus islandicus M.16.4]
 gi|238379635|gb|ACR40723.1| conserved hypothetical protein [Sulfolobus islandicus M.16.4]
          Length = 495

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 15/110 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF----LSPGRGFRRAS 60
           ++I    +S FR+ + + L       + VG NG GKTN+L +I      LS G   R   
Sbjct: 1   MRITEFYVSNFRSLSEVNLKDLGGFNVVVGYNGYGKTNLLSSIFLFIKNLSAGIEKRSVE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDV 108
                   +  F   +   +G +    I I  K+E   + + + +  N  
Sbjct: 61  DR------NQEFILLW---QGYDVSKPIMIGGKVEFSPEEANKIVGKNQK 101


>gi|227829107|ref|YP_002830886.1| hypothetical protein LS215_0087 [Sulfolobus islandicus L.S.2.15]
 gi|229577907|ref|YP_002836305.1| hypothetical protein YG5714_0089 [Sulfolobus islandicus Y.G.57.14]
 gi|227455554|gb|ACP34241.1| conserved hypothetical protein [Sulfolobus islandicus L.S.2.15]
 gi|228008621|gb|ACP44383.1| conserved hypothetical protein [Sulfolobus islandicus Y.G.57.14]
 gi|323473575|gb|ADX84181.1| ATPase-like protein [Sulfolobus islandicus REY15A]
 gi|323476222|gb|ADX81460.1| ATPase-like protein [Sulfolobus islandicus HVE10/4]
          Length = 495

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 15/110 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF----LSPGRGFRRAS 60
           ++I    +S FR+ + + L       + VG NG GKTN+L +I      LS G   R   
Sbjct: 1   MRITEFYVSNFRSLSEVNLKDLGGFNVVVGYNGYGKTNLLSSIFLFIKNLSAGIEKRSVE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDV 108
                   +  F   +   +G +    I I  K+E   + + + +  N  
Sbjct: 61  DR------NQEFILLW---QGYDVSKPIMIGGKVEFSPEEANKIVGKNQK 101


>gi|27227801|emb|CAD59409.1| SMC1 protein [Oryza sativa]
          Length = 1264

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          +I  L +  F++Y  +  +      T  +G NG GK+N+++AISF+   R    R A   
Sbjct: 15 RIHRLEVENFKSYKGTQTIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRSAHLRGAQLK 74

Query: 63 DVT 65
          D+ 
Sbjct: 75 DLI 77


>gi|167765552|ref|ZP_02437616.1| hypothetical protein CLOSS21_00046 [Clostridium sp. SS2/1]
 gi|167712737|gb|EDS23316.1| hypothetical protein CLOSS21_00046 [Clostridium sp. SS2/1]
          Length = 1185

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 84/223 (37%), Gaps = 28/223 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + ++ F+++A  +   F+   T  VG NG GK+N+ +A+ ++      +  R + 
Sbjct: 1   MYLKSIEVNGFKSFAHKMIFKFEHGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGSR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +    I  +  T   R  R       IN    R
Sbjct: 61  MEDVIFSGTELRKPMGSAYVAITLDNSDHSLPIQFEEVTVARRVYRSGESEYLINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
             D         + K          +++I SG   ERR   D     +   +++  ++ +
Sbjct: 121 RKDIVELFFDTGIGKEGYSIIGQGQIEQILSGKPEERRELFDEAAGIVK--YKKNKLETQ 178

Query: 164 RLMR-GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
           + +   R  L+      +   + +E Q+  L  +   AR  ++
Sbjct: 179 KSLEIERENLVRV----TDILTELERQVGPLKKQSERAREYLL 217


>gi|297584009|ref|YP_003699789.1| chromosome segregation protein SMC [Bacillus selenitireducens
           MLS10]
 gi|297142466|gb|ADH99223.1| chromosome segregation protein SMC [Bacillus selenitireducens
           MLS10]
          Length = 1188

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 124/357 (34%), Gaps = 41/357 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A  L + F    T  VG NG GK+NI +AI ++      R  R   
Sbjct: 1   MFLKRLELTGFKSFAEKLGIDFVPGVTAVVGPNGSGKSNISDAIRWVLGEQSARNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             DV   GS    +   A +  +    D  + ++  +    R L  +        E   +
Sbjct: 61  MEDVIFSGSDKRKALNMAEISLVLDNEDQHVPIDYSEVVVTRRLYRSGE-----SEYLLN 115

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
            +   L   +  +F    + +  F       ++     +  +   +      +L   +  
Sbjct: 116 KQTCRLK-DITDLFMDSGLGKEAFSIIGQGRVEEILSSKSEERRMIFEEAAGVLKYKFRK 174

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG----- 234
            +     E ++A+    ++  R ++I+ L        ++ +     LS+   L+      
Sbjct: 175 QAS----EKKLADTEDNLSRVR-DIIHELEQQTGPLEEQASVAKEYLSMKAELNELEAGV 229

Query: 235 ------KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                 +    +  LK +Y +     R+ +    R           +   D  ++     
Sbjct: 230 TVKEIQELHAQWTNLKNDYDQVEDQKRQHEIDRDRLEQTVLTGREALQELDDELSE---- 285

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
             +Q+ +L+         +    G     L +E   + DE +R    + +T +  Q+
Sbjct: 286 --QQQQLLIA-----TEELEKAEGKKQ--LFEERLRNFDE-RRAQHEQEMTQLRDQL 332


>gi|303230837|ref|ZP_07317584.1| conserved hypothetical protein [Veillonella atypica
          ACS-049-V-Sch6]
 gi|302514597|gb|EFL56592.1| conserved hypothetical protein [Veillonella atypica
          ACS-049-V-Sch6]
          Length = 538

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + I  + I  +++ A   +  +    IFVG+N  GK++ILEA+S +  GR
Sbjct: 1  MYITKIKILNYKSIADTIINLNKDMNIFVGENDAGKSSILEALSAVLMGR 50


>gi|256810946|ref|YP_003128315.1| SMC domain protein [Methanocaldococcus fervens AG86]
 gi|256794146|gb|ACV24815.1| SMC domain protein [Methanocaldococcus fervens AG86]
          Length = 642

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 28/44 (63%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          IK L +  FR+  ++ + F+   T+ VG+N  GKT+I++A+  +
Sbjct: 2  IKKLMVENFRSLKNVEISFEDDITVLVGENDSGKTSIVDALKIM 45


>gi|116495115|ref|YP_806849.1| DNA repair ATPase [Lactobacillus casei ATCC 334]
 gi|227534870|ref|ZP_03964919.1| DNA repair protein RecN [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|116105265|gb|ABJ70407.1| DNA replication and repair protein RecN [Lactobacillus casei ATCC
           334]
 gi|227187626|gb|EEI67693.1| DNA repair protein RecN [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
          Length = 566

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 84/249 (33%), Gaps = 37/249 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           ++ L I +F     L L F    T   G+ G GK+ I++A+  L+ GRG     R  +  
Sbjct: 2   LQELAIHDFAIIDHLALSFQPGMTALTGETGAGKSIIIDAVGLLAGGRGSVDFIRTGTTK 61

Query: 63  DVTR--IGSPSFFSTFARVEG---MEGLADISIKLETRDDRSVRCL-QINDVVIRV---- 112
                   +    +T A+++    M+   + ++ L+    R+ R + ++N  ++      
Sbjct: 62  ASLEGLFDAQENPATEAKLQAYGVMDPDQNDTVLLQREIFRTGRNVCRVNGHLVNTTTLK 121

Query: 113 ------VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
                 VD   ++     + P               F    +  +  ++     D++R +
Sbjct: 122 AIGETLVDIHGQNEHQQLMHPETHLGLLDS------FAGDDLLKLRQQYADVYHDYQRTL 175

Query: 167 ---RGRNRLLTEGYFDSSWC--SSIEAQMAEL----GVKINIARVEM--INALSSLIMEY 215
              + +     E             E Q A L       +   R  +     ++S + E 
Sbjct: 176 RAVKQKQANEQEWAQRLDMLKFQVGEIQSANLQPHEDTDLTAERERLANFQKINSALQES 235

Query: 216 VQKENFPHI 224
               +   +
Sbjct: 236 YALLSDEEV 244


>gi|190343123|gb|ACE75522.1| HP1079 [Helicobacter pylori]
          Length = 394

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+N+ + ++    +  I  G N  GK+N+LEA+ +L  G+ 
Sbjct: 2  IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49


>gi|291539669|emb|CBL12780.1| condensin subunit Smc [Roseburia intestinalis XB6B4]
          Length = 1186

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 78/210 (37%), Gaps = 26/210 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A+ +   F    T  VG NG GK+N+ +A+   L     +  R AS
Sbjct: 1   MYLKSIEVQGFKSFANKIVFDFHNGITGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGAS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   G+      S+      ++  +    +  +  T   R  R       +N    R
Sbjct: 61  MQDIIFAGTENRKPLSYAYVAITLDNADHKLPVDYEEVTVARRVYRSGESEYLLNGNTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          +++I +G   ERR   D     +  + R+     +
Sbjct: 121 LKDVTELFYDTGIGKEGYSIIGQGQIEKILNGKPEERRELFDEAAGIVKYKKRKATAQ-K 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +L   R  L+          S +E Q+  L
Sbjct: 180 KLENERENLVRVN----DILSELERQVGPL 205



 Score = 36.4 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 81/240 (33%), Gaps = 27/240 (11%)

Query: 126  VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            +  +D+    L+ +R +  D   +  +        ++E  +     L  + Y D S    
Sbjct: 917  ISELDKEVFRLNSQREKLNDAREYQTN----YMWQEYELTLHAAMDLRDDTYDDLSTLKK 972

Query: 186  IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            + AQ+ +   K+    V  I     +   Y   +      +     L G  ++    +++
Sbjct: 973  MIAQIRDEIRKLGDVNVNAIEDYKEISERYQFLKTQHDDLIEAEKTLIGIIEELDTGMRK 1032

Query: 246  EYAKKLFDGRK------MDSMSRR--TLIGPHRSDLI---VDYCDKAITIAHG-----ST 289
            ++ +K  + +K       +       TL      D++   +    +            S 
Sbjct: 1033 QFMEKFAEIQKQFDTVFKELFGGGKGTLELVEDEDILECGIRIIAQPPGKKLQNMMQMSG 1092

Query: 290  GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
            GE+ +  + +  A           +P  LLDEI A LD+       + +  +   +Q  +
Sbjct: 1093 GEKSLTAIALLFA-----IQNLKPSPFCLLDEIEAALDDSNVTRFAKYLHKLTQNTQFIV 1147


>gi|291233666|ref|XP_002736773.1| PREDICTED: SMC6 protein-like [Saccoglossus kowalevskii]
          Length = 735

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 13/114 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  F  ++ L   F       VG NG GK+ +L A+     G+       A VT 
Sbjct: 53  IERVTLKNFMCHSRLEFNFGPNVNFIVGRNGSGKSAVLTAMVVGLGGK-------ATVTN 105

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVI-RVVDELNK 118
            GS    S  A ++  +  A+++IKL  R   + +  L  N +V+ R +     
Sbjct: 106 RGS----SVKAFIKDGQSTAEVAIKLRNRGTDAFKSELYGNSIVVERKLSADGG 155


>gi|319791344|ref|YP_004152984.1| hypothetical protein Varpa_0653 [Variovorax paradoxus EPS]
 gi|315593807|gb|ADU34873.1| hypothetical protein Varpa_0653 [Variovorax paradoxus EPS]
          Length = 521

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 107/371 (28%), Gaps = 47/371 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RASYADV 64
           I+ L +S F+ + +L L FD +  + +GDN  GK+++L A+  +  G   R        +
Sbjct: 4   IERLVLSNFKKFDNLELEFDPELNLLIGDNEAGKSSVLLALELVMSGSRSRVETIGLETL 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
               +   F       G      + + L   D +     + N  V+           I  
Sbjct: 64  LNADAVRAFQAGPCTVGRLPELFVEVYLSA-DKKPGLNGKNNSKVLERDGLRMSFEPILD 122

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
               +               +                 +R +R                 
Sbjct: 123 FSKDIAEALKEDPTNFP--FEYYGVQFYTFGGEAYSSVKRHVRH---------------- 164

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
                +A    +I+               EY +     H+ +     L+  + QS    +
Sbjct: 165 -----LAIDSSRIDSEYA---------AREYTRSVFAMHVDVGNRSRLENAYRQSKGGFE 210

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
               ++L D        +  +    +++L  D       I   S G+ +     I     
Sbjct: 211 NAQLRELNDKL---VDYKFGVRTSAKANLESDLVITEDEIPIESKGKGRQ--CFIK---T 262

Query: 305 RLISNTTGFAP---ILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDSLNE 360
               +  G      +LLL+E   HL     + L   +   +  Q+F+      +   L+ 
Sbjct: 263 EFALSKKGVKSGLDVLLLEEPENHLSHATMHQLIERIAQSVNKQLFIATHSSLISARLDL 322

Query: 361 TAKFMRISNHQ 371
               +     Q
Sbjct: 323 RKAILLGEQGQ 333


>gi|217031595|ref|ZP_03437100.1| hypothetical protein HPB128_21g153 [Helicobacter pylori B128]
 gi|298736689|ref|YP_003729219.1| hypothetical protein HPB8_1198 [Helicobacter pylori B8]
 gi|216946795|gb|EEC25391.1| hypothetical protein HPB128_21g153 [Helicobacter pylori B128]
 gi|298355883|emb|CBI66755.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 394

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+N+ + ++    +  I  G N  GK+N+LEA+ +L  G+ 
Sbjct: 2  IQSVRIKNFKNFKNTKIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49


>gi|198415697|ref|XP_002122639.1| PREDICTED: similar to Structural maintenance of chromosomes protein
           6 (hSMC6) [Ciona intestinalis]
          Length = 1072

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 70/202 (34%), Gaps = 29/202 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           ++ +++  F  +  L + F       VG NG GK+ +L AI     G+     R  S   
Sbjct: 39  LESISLRNFMCHTRLSMRFSGGVNFIVGHNGSGKSAVLTAIVIALGGKASSTSRGTSLKT 98

Query: 64  VTRIGSPSFFS-TFARVEGMEG--------LADISIKLETRDDRSVRCLQINDVVIRV-- 112
           + + G+ S       R  G E            +  ++        +       V+    
Sbjct: 99  LIKTGTSSAVVEITLRNNGDESVKPEVYGPKITVERRISADGQSQYKIKSSTGKVVSTKK 158

Query: 113 ------VDELNKHL--RISWLVPSMDR--IFSGLSMERRRFL--DRMVFAIDPRHRRRMI 160
                 +DE+N H+   ++ L   M +  + S    ++ +F      +  +   +R    
Sbjct: 159 EDLLTILDEINLHVDNPLTCLNQEMSKNFLHSKNESDKYKFFLKSTQLDQMSRDYRFIKQ 218

Query: 161 D---FERLMRGRNRLLTEGYFD 179
                + +++ + + + +   D
Sbjct: 219 QQITMKSVLKQKEKAIPDLKKD 240


>gi|307154953|ref|YP_003890337.1| chromosome segregation protein SMC [Cyanothece sp. PCC 7822]
 gi|306985181|gb|ADN17062.1| chromosome segregation protein SMC [Cyanothece sp. PCC 7822]
          Length = 1204

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + IK + +S F+++  +  + F    T+  G NG GK+NIL+A+ F   L+  +G R   
Sbjct: 2  VHIKRVELSHFKSFGGTTSIPFLPGFTVISGPNGSGKSNILDALLFCLGLASSKGMRAER 61

Query: 61 YADVTRIG 68
            D+    
Sbjct: 62 LPDLVNHN 69


>gi|113475243|ref|YP_721304.1| condensin subunit Smc [Trichodesmium erythraeum IMS101]
 gi|110166291|gb|ABG50831.1| condensin subunit Smc [Trichodesmium erythraeum IMS101]
          Length = 1219

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 94/252 (37%), Gaps = 21/252 (8%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK L ++ F+++  +  +      T+  G NG GK+NIL+A+ F   LS  +G R   
Sbjct: 2   VHIKCLELTNFKSFGGTTTIPLLPGFTVVSGPNGSGKSNILDALLFCLGLSTSKGMRAER 61

Query: 61  YADVT------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             D+       R    +  +    +E +    +   +L +     V  ++ N    R   
Sbjct: 62  LPDLVNNKLAGRKTVETIVTVTFDLEDLSSQKNGQNELGSVQP-QVPEVEENGYKTRETK 120

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           +  +      +  S D +       R R   +  +        +     +L    N+L  
Sbjct: 121 DPFE------ITNSFDSLLEWSISRRLRVTKQGTYTSTYYMNGQPCTLSQLHEQLNQL-- 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
              +   +   ++  +  +    +  R E+I+ L+  + ++ +K +    KL L    + 
Sbjct: 173 -RVYAEGYNVVLQGDVTGIISMKSRERREIIDELAG-VAQFDRKISLAKEKLDLVKEQEE 230

Query: 235 KFDQSFCALKEE 246
           K       L+++
Sbjct: 231 KSRIVERELEKQ 242


>gi|332673215|gb|AEE70032.1| conserved hypothetical protein [Helicobacter pylori 83]
          Length = 381

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+N+    +    +  I  G+N  GK+N+LEA+  L  G+ 
Sbjct: 2  IQSVRIKNFKNFKDTTIDGFTKLNIITGENNAGKSNLLEALYCL-VGKS 49


>gi|269105235|ref|ZP_06157928.1| hypothetical protein VDA_000056 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268160571|gb|EEZ39071.1| hypothetical protein VDA_000056 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 364

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 69/204 (33%), Gaps = 32/204 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  FR++  L +    +  +  G N  GKT +LEA             +      
Sbjct: 2   LQHIKIRNFRSFKRLDIDRLGRINLISGKNNAGKTALLEAFQL---HVSNFAPNATHSIL 58

Query: 67  IGSPSFFSTFARVEGME-----------GLADISIKLETRDDRSV------RCLQINDVV 109
                FFS  A  + +               +  + +E+  ++          ++ +D  
Sbjct: 59  SEREEFFSKNASRDDLSPLKHFFYGHTIDSTNTPLTIESNINKQELQFGRYSLVKEDDKY 118

Query: 110 IRVVD--ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERL 165
            R  D  ++     +S+  P    IF   ++  R  +  ++   +    + R      RL
Sbjct: 119 QRQYDTFDIEDAKALSYDSPEDSYIFCASTLHERTIVGHLLNTESFRRNYLRS-----RL 173

Query: 166 MRG---RNRLLTEGYFDSSWCSSI 186
           ++    +   +  G  + +  S +
Sbjct: 174 VKQDDTKINFVPSGNINPATLSEL 197


>gi|119946202|ref|YP_943882.1| hypothetical protein Ping_2562 [Psychromonas ingrahamii 37]
 gi|119864806|gb|ABM04283.1| conserved hypothetical protein [Psychromonas ingrahamii 37]
          Length = 541

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + I+ +NI  ++ Y     + F+    I VGDNG GK+ ILEA + +  G
Sbjct: 1  MYIERVNIYNYKCYYGKFSIEFNKGVNILVGDNGSGKSTILEAANLVLSG 50


>gi|229086748|ref|ZP_04218914.1| DNA repair protein recN [Bacillus cereus Rock3-44]
 gi|228696569|gb|EEL49388.1| DNA repair protein recN [Bacillus cereus Rock3-44]
          Length = 583

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 53/278 (19%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110
            G+                   A+ E ++   +  + +  RD         ++N  ++  
Sbjct: 61  YGTEKAEIEGLFYIEDDKHPCIAKAEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTL 120

Query: 111 -------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                  + + +++       L+     +F         F    +      ++    ++E
Sbjct: 121 SLLKEIGKTLVDIHGQHETQDLMNEERHLFMLD-----HFDGDRISNQLEIYQGVYGEYE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           +L +     L     +       E QMA         R+++I      I +   K +   
Sbjct: 176 QLKKQ----LKSLTEN-------EQQMA--------HRLDLIQFQHEEICKADLKAD-EE 215

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            +L+        F++ + AL + Y     DG  +D + 
Sbjct: 216 NELTEEKLKISNFEKIYKALGDAYRSLSEDGSGLDHVR 253


>gi|168210651|ref|ZP_02636276.1| chromosome segregation protein SMC [Clostridium perfringens B str.
           ATCC 3626]
 gi|170711287|gb|EDT23469.1| chromosome segregation protein SMC [Clostridium perfringens B str.
           ATCC 3626]
          Length = 1185

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A    L F    T  VG NG GK+N+ +++   L     +  R A 
Sbjct: 1   MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       +      ++   G      + +K+  +  RS      IN+   R
Sbjct: 61  MEDVIFTGTEYRKPIGYAQVSLTLDNSLGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +N  +                +D I SG   +RR  L+
Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162


>gi|161528753|ref|YP_001582579.1| SMC domain-containing protein [Nitrosopumilus maritimus SCM1]
 gi|160340054|gb|ABX13141.1| SMC domain protein [Nitrosopumilus maritimus SCM1]
          Length = 693

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I  + + +F  ++  +L FD   T+FVG NG GK++I++AI+F   G+   R S   + +
Sbjct: 2  ITSIELGDFLAHSDTKLEFDNGVTVFVGHNGAGKSSIIDAITFALFGQ-HTRKSNKGLIK 60

Query: 67 IGSPSFFS 74
           G+   +S
Sbjct: 61 RGANQGYS 68



 Score = 38.7 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 10/78 (12%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG----- 342
           S GE+  V + + L  A L+  +     +++LDE + HLD +++ +L  +++ +      
Sbjct: 596 SGGEKVSVALSLRLGMANLLGGSN--LNLMILDEPTTHLDAERKKSLVSVLSQLSNISNS 653

Query: 343 ---SQIFMTGTDKSVFDS 357
               Q  +   D  +F+ 
Sbjct: 654 ETPMQFIIITHDAEIFED 671


>gi|94263248|ref|ZP_01287065.1| ATPase [delta proteobacterium MLMS-1]
 gi|93456466|gb|EAT06586.1| ATPase [delta proteobacterium MLMS-1]
          Length = 428

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISF 49
          M+  + I  + + + R Y    + F       +  G+NG GKT +L +I+ 
Sbjct: 1  MSIMMHITKITLKDVRCYEDAEIDFGTSGTPIVICGNNGSGKTTLLRSIAL 51


>gi|196232677|ref|ZP_03131528.1| chromosome segregation protein SMC [Chthoniobacter flavus Ellin428]
 gi|196223137|gb|EDY17656.1| chromosome segregation protein SMC [Chthoniobacter flavus Ellin428]
          Length = 1280

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + ++ L +  F+++A   +L F    T  VG NG GK+N+L+A+ ++      +  R   
Sbjct: 1   MYLQSLELFGFKSFAPKTKLEFHRGVTAVVGPNGCGKSNVLDAMRWVLGEQSAKALRGGE 60

Query: 61  YADVTRIGSPSFFST--------FARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIR 111
            ADV   G+ S  +         FA  E   GL    + L  R  R       +N    R
Sbjct: 61  MADVIFSGTDSRAAVGMAEVSMTFAECEEQLGLDWHEVTLTRRVFRDGGSEYFLNKTPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + +          +D I S    +RR   +
Sbjct: 121 LKDIHQLFMDTGIGRSAYSIMEQGKIDMILSSRPEDRRAIFE 162


>gi|194882959|ref|XP_001975577.1| GG22392 [Drosophila erecta]
 gi|190658764|gb|EDV55977.1| GG22392 [Drosophila erecta]
          Length = 1179

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 18/124 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + +K L +  F++Y     +  FD + T   G NG GK+NIL++I F   +S  +  R +
Sbjct: 1   MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +           +G E   +IS+  +       + L IN 
Sbjct: 61  ALQDLVYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVARQVVVGGKNKFL-ING 119

Query: 108 VVIR 111
            +++
Sbjct: 120 KLVQ 123



 Score = 36.4 bits (83), Expect = 7.6,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 263  RTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
             T       ++ V +  K   ++   S G++ +V + + LA  +        AP+ +LDE
Sbjct: 1058 HTNGCLTGLEIKVGFNGKWKESLGELSGGQKSLVALSLVLAMLKF-----SPAPLYILDE 1112

Query: 322  ISAHLDEDKRNALFRIVTD--IGSQIFMTGTDKSVFDS 357
            + A LD      +  ++      SQ  +      +F+ 
Sbjct: 1113 VDAALDMSHTQNIGSMLKQHFTNSQFLIVSLKDGLFNH 1150


>gi|187250824|ref|YP_001875306.1| chromosome segregation ATPase [Elusimicrobium minutum Pei191]
 gi|186970984|gb|ACC97969.1| Chromosome segregation ATPase [Elusimicrobium minutum Pei191]
          Length = 1148

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 94/274 (34%), Gaps = 45/274 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + I  F+++A   RL F+   T  VG NG GK+N+++++ +       +  R AS
Sbjct: 1   MYLKAIEIIGFKSFADRQRLDFEKGITCVVGPNGCGKSNVVDSVRWAIGEMSWKSLRSAS 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+      +        +       +    I +  +  RS      +N V  R
Sbjct: 61  MIDIIFNGTARRSPLNLAQVNMIFDNESRKLPLDFNEITVSRKIFRSGESEYFLNKVQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         +            ++ + S  + +RR   + +           +  ++
Sbjct: 121 LRDIRDLFLDTGIGGEGYAIIDQGGVESVLSASAEQRREMFEEVAG---------VSKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
                  R L     D +  S     ++ Q+ +L  +   AR+           +Y ++ 
Sbjct: 172 AKREEAIRRLDRVDLDIARLSDTVVLLDEQIKKLDTEAKKARL---------YQKYREEL 222

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
               I +SL    +  FD +      E    +  
Sbjct: 223 KESEIAISLESIKE--FDANIVKDSAELEPLIKQ 254


>gi|110800938|ref|YP_696403.1| chromosome segregation protein SMC [Clostridium perfringens ATCC
           13124]
 gi|110675585|gb|ABG84572.1| chromosome segregation protein SMC [Clostridium perfringens ATCC
           13124]
          Length = 1185

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A    L F    T  VG NG GK+N+ +++   L     +  R A 
Sbjct: 1   MFLKSLEIRGFKSFADKTELNFKKGITAIVGPNGSGKSNVSDSVRWVLGEQSAKTLRGAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD---ISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       +      ++   G      + +K+  +  RS      IN+   R
Sbjct: 61  MEDVIFTGTEYRKPIGYAQVSLTLDNSLGELPLDYLDVKVTRKLFRSGESEYLINNSPCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +N  +                +D I SG   +RR  L+
Sbjct: 121 LKDVVNLFMDTGIGKEGYSLIGQGKIDSILSGKPEDRRAILE 162


>gi|206976162|ref|ZP_03237071.1| ATPase involved in DNA repair, putative [Bacillus cereus
          H3081.97]
 gi|206745616|gb|EDZ57014.1| ATPase involved in DNA repair, putative [Bacillus cereus
          H3081.97]
          Length = 898

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +KI+ L I  F+NY   +      +  +  G NG GK++  +AI +   G+
Sbjct: 1  MKIERLIIKNFKNYMGEVEFDLSKEVILLYGANGFGKSSFFDAIEWCLTGK 51


>gi|297545260|ref|YP_003677562.1| SMC domain-containing protein [Thermoanaerobacter mathranii
          subsp. mathranii str. A3]
 gi|296843035|gb|ADH61551.1| SMC domain protein [Thermoanaerobacter mathranii subsp. mathranii
          str. A3]
          Length = 88

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + +  + I  FR+   + + F     I VG N  GK+NI++AI  
Sbjct: 1  MYLHRVIIKNFRSIEYIDITFAKGKNIIVGKNNCGKSNIIKAIDL 45


>gi|162449092|ref|YP_001611459.1| chromosome partition protein fragment [Sorangium cellulosum 'So ce
           56']
 gi|161159674|emb|CAN90979.1| chromosome partition protein fragment [Sorangium cellulosum 'So ce
           56']
          Length = 456

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 95/350 (27%), Gaps = 71/350 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---------R 57
           I    I  F++     +  +   T+FVG NG GK+N+LEAI  L               R
Sbjct: 2   ITRFEIDGFKSLRDFMVDLEP-LTVFVGPNGAGKSNLLEAIGLLGRLASMPLEEAFKLGR 60

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEG---------------LADISIKLETRDDRSV-- 100
                  +R G  +  +    VE                        + +E R   S   
Sbjct: 61  GRVIDQFSRSGGEAGKTIRLAVEVSLRSTPAPFQDGEPPLPVRYRYELVIERRARPSGVE 120

Query: 101 ---------RCLQINDVVIRVVDELN-----KHLRISWLVPSMDR---IFSGLSMERRRF 143
                    R L   D   R    L         R   + P  +    +           
Sbjct: 121 ELVVSGECLRALADKDGPPRREIILRHEDEDGRERRVLIAPEYESWAGLNYRCPRTHAAL 180

Query: 144 L----DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE---AQMAELG-V 195
                    + I+    + +      +            +  W + I     +++    +
Sbjct: 181 AALKTGSGTYHINLDFPKELTAERAALFEEYADFRNTNSERGWRAVINIITDELSRFSLL 240

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
           +++ AR+   +  +  I       N P I   L     G+      +L    A       
Sbjct: 241 QLDPARLRDSSERTDSIALAPDASNLPTILADLPAPTLGEIRADLVSLIPGLA------- 293

Query: 256 KMDSMSRRTLIGPHRSDLIVDY---CDKAITIAHGSTGEQKVVLV--GIF 300
                    ++ P   DL +++     + +     S G  + + +   + 
Sbjct: 294 ------GFNVV-PDDDDLRIEFKLSGGERLPARLASDGTLRGLALLTALR 336


>gi|158335947|ref|YP_001517121.1| chromosome segregation protein SMC [Acaryochloris marina
          MBIC11017]
 gi|158306188|gb|ABW27805.1| chromosome segregation protein SMC [Acaryochloris marina
          MBIC11017]
          Length = 1220

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + +K L +S F+++ S   +      T+  G NG GK+N+L+A+ F   L+  RG R   
Sbjct: 1  MYVKQLELSHFKSFGSTTAIPLLPGFTVVSGPNGSGKSNLLDALLFALGLAGSRGMRAER 60

Query: 61 YADVTRI 67
            D+   
Sbjct: 61 LPDLVNH 67


>gi|70726681|ref|YP_253595.1| chromosome segregation SMC protein [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447405|dbj|BAE04989.1| chromosome segregation SMC protein [Staphylococcus haemolyticus
           JCSC1435]
          Length = 1189

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 97/299 (32%), Gaps = 32/299 (10%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADHTDVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+   G+             +  A++ +KL    D   R LQ++   I V   L +  
Sbjct: 62  MEDIIFSGAEH--------RNAQNYAEVQLKL----DNKARKLQVDSDDIVVTRRLYRSG 109

Query: 121 RISWLVPSM-------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
              + + +          +F    + +  F       +D     + ID  +++     +L
Sbjct: 110 ESEYYLNNDKARLRDITELFLDSGLGKEAFSIISQGRVDEILNAKPIDRRQILEESAGVL 169

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
                 +     ++               +++  L   +     + +     L L+  + 
Sbjct: 170 KYKKRKAESLQKLD-----HTEDNLTRVEDILYDLEGRVEPLKAEASIAKEYLKLSEEMK 224

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
                      ++Y++   D R++D      L                      S  +Q
Sbjct: 225 QSDVIVTVNDIDQYSE---DNRQLDQKL-NDLKSQQADKEAKQAQINKYIQKQKSQRQQ 279


>gi|46128649|ref|XP_388878.1| hypothetical protein FG08702.1 [Gibberella zeae PH-1]
          Length = 1087

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 93/281 (33%), Gaps = 25/281 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
            I  + +  F  Y     +      + VG NG GK++++ AI  L  G       R  S 
Sbjct: 70  AIVRVTVENFVTYEKAEFLPGPHLNMVVGPNGTGKSSLVCAIC-LGLGYSPKHLGRAGSV 128

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKH 119
            +  + G           +  +   +  +K++ R +++ +   +N      + +  L   
Sbjct: 129 KEFVKHGKDIATIEIELQKRPKDPQNWIVKVQIRREQNNQKWWLNGNESSHKRIHALMHK 188

Query: 120 LRISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM-RGRNRLL 173
           L+I        +P   R+    +      L   + A  P          + + + +  L 
Sbjct: 189 LKIQVDNLCQFLPQD-RVVEFAACTPVDLLRETLRAAAPEEMLAWQRQLQELDKDKKELE 247

Query: 174 TEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSS------LIMEYVQKENFPHIK 225
              + D     ++E   Q  +  V     R E++  + +             + NF   K
Sbjct: 248 QSTHGDVETLRNLENRQQGLQADVDRLREREEIVEQIKNLRSALVFAKYTEARTNFKDAK 307

Query: 226 LS---LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
                    L      +  +L+    K+L+  R  +++S R
Sbjct: 308 ERKKMAERSLRRLEHDAGPSLEAVNTKQLYAQRIDEAISGR 348


>gi|294827836|ref|NP_711490.2| chromosome segregation protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293385681|gb|AAN48508.2| chromosome segregation protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 924

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K LNI  F+ +A    ++ D   T  VG NG GK+NI++A+ ++      +G R   
Sbjct: 1   MYLKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGDK 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS +   + +A V  +   +   IK++    +  R L ++ 
Sbjct: 61  MDDVIFHGSEARKPAGYAEVSVIFDNSSKLIKMDYPTVKMTRRLYMDG 108


>gi|229541119|ref|ZP_04430179.1| chromosome segregation protein SMC [Bacillus coagulans 36D1]
 gi|229325539|gb|EEN91214.1| chromosome segregation protein SMC [Bacillus coagulans 36D1]
          Length = 1190

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L++  F+++A  +   F    T  VG NG GK+N+++A+ ++      +  R   
Sbjct: 1   MFLKRLDVIGFKSFADRISFEFVPGVTAVVGPNGSGKSNVIDAVRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS      +F      +E       I  +  +   R  R       IN    R
Sbjct: 61  MEDVIFAGSDTRKPLNFAEVTLTLENEGRALPIDYQEVSVTRRVYRSGESEFYINKQQCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123



 Score = 36.0 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 14/159 (8%)

Query: 196  KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLF 252
            +    R + +    + ++E   K+    +   + G +  +FD++F A++ E+    ++LF
Sbjct: 996  ERVSERYQFLKEQETDLLE--AKDTLDQVITEMDGEMIRRFDETFNAIRNEFEPVFRELF 1053

Query: 253  DGRKMDSMSR--RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
             G + D      + L+             K   +   S GE+ +  + +  A  R+    
Sbjct: 1054 GGGRADLRLTDPKDLLTTGVEIFAQPPGKKLQNLGLLSGGERALTAIALLFAILRV---- 1109

Query: 311  TGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFM 347
                P  +LDE+ A LDE       + +      +Q  +
Sbjct: 1110 -RPVPFCILDEVEAALDEANVYRFSKYLKQFSAETQFIV 1147


>gi|74095929|ref|NP_001027796.1| SMC2 protein [Takifugu rubripes]
 gi|27805179|emb|CAD58848.2| SMC2 protein [Takifugu rubripes]
          Length = 1200

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 27/236 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGR--GF-RRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL         R +
Sbjct: 1   MHIKSIILEGFKSYAQRTEINGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSHVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQGGITKATVSITFDNSNKGESPLGFETHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM + +
Sbjct: 120 VNANNTRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQ 217
           ++   +     E          ++ ++     K+   R   +    L   I    +
Sbjct: 178 KISAQKTIEKKEAKLKEIQT-ILDEEITPTMQKLQEERSSYLEYQKLMREIQHLTR 232


>gi|83772645|dbj|BAE62773.1| unnamed protein product [Aspergillus oryzae]
          Length = 1185

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 14/217 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + +++F  Y S       +  + +G NG GK+ ++ AI   L  G     R     
Sbjct: 106 AIVRIKVTDFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPAHLGRAKDPG 165

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL------ 116
           +  + G            G     +  +    + D +     IN         L      
Sbjct: 166 EFVKHGCREATIEIELAGGPHFRRNPVVTRTIKRDGNKSSFTINGKTASRTQVLKLAQSF 225

Query: 117 -NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT- 174
             +   +   +P   ++    ++     L+    A          D  + +R R + L  
Sbjct: 226 SIQIDNLCQFLPQD-KVSEFAALTPIELLNSTQRAAAGAEMIEWHDNLKQLRARQKKLQA 284

Query: 175 EGYFDSSWCSSIEA--QMAELGVKINIARVEMINALS 209
           +   D    +++E   +M    V+    R E+   + 
Sbjct: 285 DNKSDKDLLTNLEERQEMQRADVERMRQRAEIKRKIE 321


>gi|323508294|emb|CBQ68165.1| related to DNA repair protein rad18 [Sporisorium reilianum]
          Length = 1177

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ + +  F  +A+  + F ++    +G NG GK+ IL A+     G+     R +S  D
Sbjct: 137 VEKIELRNFMCHANFSIDFGSKLNFVMGRNGSGKSTILTALMIALGGKTSSTNRGSSLKD 196

Query: 64  VTRIGSPSF-FSTFARVEGME 83
           + + G  S   +   R +G +
Sbjct: 197 LVKKGEHSATITVTVRNQGSD 217


>gi|313890274|ref|ZP_07823908.1| chromosome segregation protein SMC [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313121379|gb|EFR44484.1| chromosome segregation protein SMC [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 1181

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ F+   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKKIEMQGFKSFADKTKIEFEKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             D+   G+ S  +  FA V  +   +D  IK   ++ R  R +         I+   +R
Sbjct: 61  MPDIIFAGTESRNALNFAEVAIVLDNSDEFIKDAGKEIRVERHIYRNGDSDYLIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    ERR   +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRTIFE 162


>gi|308158766|gb|EFO61331.1| SMC4-like protein [Giardia lamblia P15]
          Length = 1465

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 4/85 (4%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYA 62
           +  L +  F++YA   +   F +  +  +G NG GK+N+++++ F+     R  R +  A
Sbjct: 36  LTKLRLVNFKSYAGEHVLGPFKSSFSCILGANGSGKSNVIDSLLFVFGWRARALRHSRLA 95

Query: 63  DVTRIGSPSFFSTFARVEGMEGLAD 87
           D+    S       ARV+    L D
Sbjct: 96  DLIHTSSEHPELDHARVDVHFTLWD 120


>gi|257083237|ref|ZP_05577598.1| chromosome partition protein SMC [Enterococcus faecalis Fly1]
 gi|256991267|gb|EEU78569.1| chromosome partition protein SMC [Enterococcus faecalis Fly1]
          Length = 1192

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 98/275 (35%), Gaps = 30/275 (10%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +      L+           +E Q+  L  + + A  + + AL   + E         
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQADAA-KKYL-ALKEELTEIDVNLTVTE 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
           I+       + K  Q   A++E+ A      R ++
Sbjct: 234 IQ-EAKAIWETKT-QELTAIEEKLAGASKQVRDLE 266



 Score = 40.3 bits (93), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|251780518|ref|ZP_04823438.1| chromosome segregation protein SMC [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084833|gb|EES50723.1| chromosome segregation protein SMC [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 1185

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L+I  F+++A    L F+   T  VG NG GK+NI +A+ ++   +     R   
Sbjct: 1   MFLKSLDIRGFKSFADKTELKFNNGVTAVVGPNGSGKSNISDAVRWVLGEQSVKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              +E  +          T   R  R       IN+   R
Sbjct: 61  MEDVIFAGTQYRKPVGLAQVSLTLENSDKKLSTEYSEVTVSRRIFRSGESEYLINNKKCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +N  +                ++ I SG   ERR  L+
Sbjct: 121 LKDVINLFMDTGIGKEGYSLIGQGKIESILSGRPEERRALLE 162


>gi|269837877|ref|YP_003320105.1| SMC domain-containing protein [Sphaerobacter thermophilus DSM
           20745]
 gi|269787140|gb|ACZ39283.1| SMC domain protein [Sphaerobacter thermophilus DSM 20745]
          Length = 850

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 97/277 (35%), Gaps = 46/277 (16%)

Query: 8   KFLNISEFRNYAS-LRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
             L I  F +Y   + + F   +     GDNG GK+ +L+AI++   G+  R  S  D+ 
Sbjct: 4   TRLAIRNFMSYREPVEIDFRGIRVACLSGDNGAGKSALLDAITWALWGKA-RVNSDRDLI 62

Query: 66  RIGSPSFFSTFARVEGMEG-----------LADISIKLETRDDRSVRCLQIN--DVVIRV 112
            IG+P    TF  + G +             +  +++LE  +    R L         + 
Sbjct: 63  SIGAPDMEVTFGFILGEQEFRVTRRRRARATSSATLELEAIEGDRCRSLTGASLRETQQT 122

Query: 113 VDELNKHLRISWLVPSM------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
           +D L +    +++  +       D   +    +R++ L  ++             +E   
Sbjct: 123 IDRLLRMDYETFINSAFILQGRADEFTTKTPQQRKQVLAEILN------LSEYDRYEEAA 176

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           R   R              I+  +AEL              L+ L     + E+     L
Sbjct: 177 RQAFRERDRR------LREIDLHLAELD-----------QRLADLPRHREEVESLGQELL 219

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
            LT   D    +   A++E      F   + +S+ RR
Sbjct: 220 KLTDRAD-DLRRRLDAVQERVRSLEFTASQRESVRRR 255


>gi|188590228|ref|YP_001920587.1| chromosome segregation protein SMC [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188500509|gb|ACD53645.1| chromosome segregation protein SMC [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 1185

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L+I  F+++A    L F+   T  VG NG GK+NI +A+ ++   +     R   
Sbjct: 1   MFLKSLDIRGFKSFADKTELKFNNGVTAVVGPNGSGKSNISDAVRWVLGEQSVKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              +E  +          T   R  R       IN+   R
Sbjct: 61  MEDVIFAGTQYRKPVGLAQVSLTLENSDKKLSTEYSEVTVSRRIFRSGESEYLINNKKCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +N  +                ++ I SG   ERR  L+
Sbjct: 121 LKDVINLFMDTGIGKEGYSLIGQGKIESILSGRPEERRALLE 162


>gi|45658257|ref|YP_002343.1| chromosome segregation protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601499|gb|AAS70980.1| chromosome segregation protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 924

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K LNI  F+ +A    ++ D   T  VG NG GK+NI++A+ ++      +G R   
Sbjct: 1   MYLKSLNIVGFKTFADETEILLDPGFTAVVGPNGSGKSNIVDAVKWVFGEKSAKGLRGDK 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS +   + +A V  +   +   IK++    +  R L ++ 
Sbjct: 61  MDDVIFHGSEARKPAGYAEVSVIFDNSSKLIKMDYPTVKMTRRLYMDG 108


>gi|290968541|ref|ZP_06560080.1| hypothetical protein HMPREF0889_1676 [Megasphaera genomosp.
          type_1 str. 28L]
 gi|290781537|gb|EFD94126.1| hypothetical protein HMPREF0889_1676 [Megasphaera genomosp.
          type_1 str. 28L]
          Length = 558

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + IK ++I  +RN   + L F       VG+N +GK++ L  +S +  G
Sbjct: 1  MYIKSMHIENYRNLRDVTLHFHESMNYLVGENAIGKSSFLRLLSLICKG 49


>gi|229047954|ref|ZP_04193530.1| hypothetical protein bcere0027_39290 [Bacillus cereus AH676]
 gi|228723411|gb|EEL74780.1| hypothetical protein bcere0027_39290 [Bacillus cereus AH676]
          Length = 681

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + I  FRNY  + +    +  I +G+N VGKTN L AI  +           +D  R
Sbjct: 20  ISKIKIKNFRNYKDVDVTLSHK-QIIIGENNVGKTNFLRAIQLILD------PKLSDEDR 72

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
               S F      + M     I I +E +     + +
Sbjct: 73  YLQESDFFDGLE-DPMNQKEKIEISIEIKGYEHNKTI 108


>gi|28210932|ref|NP_781876.1| chromosome segregation protein smc2 [Clostridium tetani E88]
 gi|28203371|gb|AAO35813.1| chromosome segregation protein smc2 [Clostridium tetani E88]
          Length = 1186

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L I  F+++A+   + F    T  VG NG GK+NI +AI ++   +     R   
Sbjct: 1   MFLKSLEIRGFKSFANKTEINFQKGITAIVGPNGSGKSNISDAIRWVLGEQSIKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISI------KLETRDDRSVRCLQINDVV 109
             DV   G+              ++  +    +        ++  R   S   +  N   
Sbjct: 61  MEDVIFAGTQFRKPVGLAKVSLTLDNSKSELPLDYSEIMVSRIIYRSGESEYLINNNKCR 120

Query: 110 IRVVDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + EL       K          +D I SG   ERR  L+
Sbjct: 121 LKDIQELFMDTGIGKEGYSIIGQGKIDAILSGKPEERRSLLE 162


>gi|330928862|ref|XP_003302431.1| hypothetical protein PTT_14235 [Pyrenophora teres f. teres 0-1]
 gi|311322250|gb|EFQ89491.1| hypothetical protein PTT_14235 [Pyrenophora teres f. teres 0-1]
          Length = 1132

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 80/274 (29%), Gaps = 20/274 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           +  + ++ F  Y +          + +G NG GK+ ++ AI   L  G     R     +
Sbjct: 71  LVRVKLTNFVTYTAAEFHLGPSLNMVIGPNGTGKSTLVCAICLGLGWGSEHLGRAKQVGE 130

Query: 64  VTRIGSPSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLR 121
             + G+           G  E    I I+   ++D   R          + V EL K   
Sbjct: 131 YVKHGATMATIEIELAAGPGEDGNHIIIRTIRKEDNQSRWFLNGARSTQKEVIELAKTYS 190

Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR--GRNRLLT 174
           I        +P    +      +  R  +    A  P +     D  + +R   RN    
Sbjct: 191 IQIDNLCQFLPQDRVVEFARMTDIERLRETQ-RAAAPPYMVEWHDELKALRKDERNLETK 249

Query: 175 EGYFDSSWCSSIEAQMAELG-VKINIARVEM------INALSSLIMEYVQKENFPHIKLS 227
                    +  + Q A  G V     R E+      +     +I   + ++    +K +
Sbjct: 250 RQNEGKHLEALRKVQTAAQGDVDRIRERQEIQTKSNCLRKAKPVIELRLCRKEIEQLKET 309

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           L        +          A+      + D   
Sbjct: 310 LRVARLELDEIKVDVEPARQAQAEMQSYQSDIEK 343


>gi|156102837|ref|XP_001617111.1| structural maintenance of chromosome 2 [Plasmodium vivax SaI-1]
 gi|148805985|gb|EDL47384.1| structural maintenance of chromosome 2, putative [Plasmodium vivax]
          Length = 1218

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 19/145 (13%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + I+ + +  F++Y +  +   F  Q     G NG GK+N+L+AI F+         R  
Sbjct: 1   MHIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60

Query: 60  SYADVT-RIGSPSFFSTFARV------------EGMEGLADISIKLETRDDRSVRCLQIN 106
              ++  + G          +            E    + +I+I  +       R L  +
Sbjct: 61  RLDELIYKQGQAGITKGSVTIKFNNEQKPSPLQEPYRDMKNITITRQIVLGGRNRYLLNS 120

Query: 107 D-VVIRVVDELNKHLRISWLVPSMD 130
                + + +  + L+++   P   
Sbjct: 121 HNAKPKDISDFFQSLKLNINNPHFL 145


>gi|56460803|ref|YP_156084.1| chromosome segregation ATPase, sms [Idiomarina loihiensis L2TR]
 gi|56179813|gb|AAV82535.1| Chromosome segregation ATPase, sms [Idiomarina loihiensis L2TR]
          Length = 1152

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 100/294 (34%), Gaps = 43/294 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + +  F+++    ++ F  Q T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLKHIKLVGFKSFVDPTKVPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
            +DV   GS +            F ++  R++G      +IS+K     D       +N 
Sbjct: 61  MSDVIFNGSSARKPVSQASVELVFDNSSGRIQGEYAAFNEISVKRLVTRDGQSNYF-LNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   R+F   +       ERR+ 
Sbjct: 120 SRCRRRDITDLFLGTGLGPRSYAIIEQGMISRLIESRPQELRVFIEEAAGISKYKERRKE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
            +  +      +  R+ D    +  +   L      +     ++A   +   ++   R  
Sbjct: 180 TENRMLH-TRENLERLSDVREELGQQLEKLERQAAAAIRYKELKASERKFKGELQALRWL 238

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            ++     +     ++     +       D +         EE   ++   ++ 
Sbjct: 239 KLDNQRQQLQTQYAEQQTELERWQAQQSGDERGAIELKEQAEEARDRVELSQEQ 292


>gi|83273857|ref|XP_729582.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23487793|gb|EAA21147.1| protein mix-1, putative [Plasmodium yoelii yoelii]
          Length = 1227

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + I+ + +  F++Y +  +   F  Q     G NG GK+N+L+AI F+         R  
Sbjct: 1   MHIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60

Query: 60  SYADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
              ++  + G          ++         ++   RD +++   +
Sbjct: 61  RLDELIYKQGQAGITKGSVTIKFNNEEKPSPLQEPYRDMKTITITR 106


>gi|326469275|gb|EGD93284.1| hypothetical protein TESG_00831 [Trichophyton tonsurans CBS 112818]
          Length = 1194

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 3/109 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I  + ++ F  Y S       +  + +G NG GK+  + AI   L  G  +  R    A+
Sbjct: 120 IVRVKLTNFVTYTSAECHPGPRLNMVIGPNGTGKSTFVCAICLGLGWGPSYLGRAKDVAE 179

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
             + G+             +   +  I    + + +     IN   +R 
Sbjct: 180 FVKHGADEAIIEIELKARADMDQNPIICRTIKREGNKSTFSINGTPVRQ 228


>gi|327309254|ref|XP_003239318.1| hypothetical protein TERG_01300 [Trichophyton rubrum CBS 118892]
 gi|326459574|gb|EGD85027.1| hypothetical protein TERG_01300 [Trichophyton rubrum CBS 118892]
          Length = 1194

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 35/313 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I  + ++ F  Y S       +  + +G NG GK+  + AI   L  G  +  R    A+
Sbjct: 120 IVRVKLTNFVTYTSAECHPGPRLNMVIGPNGTGKSTFVCAICLGLGWGPSYLGRAKDVAE 179

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL------- 116
             + G+             +   +  I    + + +     IN   +R    L       
Sbjct: 180 FVKHGADEATIEIELKARADMDQNPIICRTIKREGNKSTFSINGKPVRQNVVLSLAKSFS 239

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG----RNRL 172
            +   +   +P      S  +      +D +           M+ +   ++     +  +
Sbjct: 240 IQIDNLCQFLPQDK--VSEFAALSP--IDLLHSTQRAAAGPEMVKWHEGLKELRLGQKDI 295

Query: 173 LTEGYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
           L E        +++E   QM    V+    R E+   L    +E       P        
Sbjct: 296 LEESKGQREHLANLEKRQQMQREDVERMKQREEIKKRLK--FLEM--SRPLPRF------ 345

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GST 289
                  +    + E+  + L + ++++      L   +         +  +      S 
Sbjct: 346 ---NSCKKETSEVLEQKQRLLREQQELERKLEPALRAVNSKRAYYSKIEAVLKQKRVLSQ 402

Query: 290 -GEQKVVLVGIFL 301
            GE+    +   L
Sbjct: 403 KGEEAATAISEKL 415


>gi|323340722|ref|ZP_08080974.1| cell division protein Smc [Lactobacillus ruminis ATCC 25644]
 gi|323091845|gb|EFZ34465.1| cell division protein Smc [Lactobacillus ruminis ATCC 25644]
          Length = 1180

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 27/165 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++IK L +S F+++A    + F    T  VG NG GK+NI+E + ++      +  R   
Sbjct: 1   MRIKSLTLSGFKSFADKTTIEFQDGLTGVVGPNGSGKSNIIEGLRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   GS +            F +T   ++  +    I+ K+    D       IN  
Sbjct: 61  MPDVIFAGSQTRAPLNRCMVQAVFDNTDHYLKNQQDDVTITRKIYRNGDSE---YLINGK 117

Query: 109 VIRVVD--ELNKHLRI------SWLVPSMDRIFSGLSMERRRFLD 145
             R+ D  +L     +           S++ IF+    +RR  ++
Sbjct: 118 QARLRDIVDLFTDTGVGRESFSIISQGSVEEIFNSKPQDRRMLIE 162


>gi|312375227|gb|EFR22641.1| hypothetical protein AND_14406 [Anopheles darlingi]
          Length = 854

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           K+  + +  F  +  L + F+    + VG NG GK+ I+ A++           R +S  
Sbjct: 22  KVLRMELKNFMCHRHLVIEFNKSVNLLVGKNGSGKSAIVAALTVGLGCNAMQTNRGSSLK 81

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVDELNKH 119
           D+ + G P          G     D     E   +R V  R +  N      + + N H
Sbjct: 82  DLIKHGEPQAVIEIHLENGNFNGFDQ----ERYGNRIVCQRTIYANGKGSYKLTDANGH 136


>gi|242048726|ref|XP_002462109.1| hypothetical protein SORBIDRAFT_02g019360 [Sorghum bicolor]
 gi|241925486|gb|EER98630.1| hypothetical protein SORBIDRAFT_02g019360 [Sorghum bicolor]
          Length = 1039

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/265 (19%), Positives = 84/265 (31%), Gaps = 28/265 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I  + +  F  ++SL +  D       G NG GK+ IL A+      R     R AS  D
Sbjct: 6   ISRIRLENFMCHSSLHIELDQHVNFITGQNGSGKSAILTALCVAFGCRAKNTQRAASLKD 65

Query: 64  VTRIGSP-SFFSTFARVEGME----GLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
             + G   +  +      G +     +   +I LE R   S     + D   R V     
Sbjct: 66  FIKNGCSYAAITVDINNHGEDAFKPEVYGDTIILERRITESAGSTVLKDQHGRKVAHRKD 125

Query: 119 HLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
            L           I            + R FL       + + + +      L++  N L
Sbjct: 126 DLNEII---EHFNIEVENPCVIMSQDKSREFLHSG----NDKDKFKFFFKATLLQQVNDL 178

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           L     + +   SI  ++      I  A  E ++ +   I      E   H   +L   L
Sbjct: 179 LATIRDNLNIADSIVEELE---ASIRPALRE-LDEIQEKIKNMEHIEEIAHEIENLKKKL 234

Query: 233 DGKFDQSFCAL---KEEYAKKLFDG 254
              +          +EE  +KL + 
Sbjct: 235 AWAWVYDVDKEIGGQEENLEKLKER 259


>gi|218780066|ref|YP_002431384.1| SMC domain-containing protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761450|gb|ACL03916.1| SMC domain-containing protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 397

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 53/388 (13%), Positives = 116/388 (29%), Gaps = 58/388 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + I  +  S F++    ++ F      IFVG NG GK+N+LEAI  LS     R      
Sbjct: 1   MIISRMKFSSFKSME--KVDFQPGVVNIFVGANGSGKSNLLEAIGVLSAAASGRV-DDES 57

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R G      +  +           I+    ++ +   + + + +   + E        
Sbjct: 58  LKRRGVRPGLPSLYKCAFPGIKESSPIEFSAWNEHASYEVSLLNPIKEPLPEWRYDKENL 117

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           W     D+I        R+  +             +   E         L      +   
Sbjct: 118 W---EDDKIVIDRRQGDRKKYNPEAG------LAALSMVE---------LDAQSPSAKLL 159

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCA 242
            ++          I       +  +S  + +          + ++L   L     ++   
Sbjct: 160 KALRD------FAIYSPDTNTLRGISPDLQQRPPIGLAGGQLPIALDDLLIPGKPENDSF 213

Query: 243 LKEEYAKKL-----FDGRKMDSMSRRTLI-GPHRSDLIVDYCDKAITIAH-------GST 289
           +++   + L      +    D+  +  +  G      ++ + D+ +            S 
Sbjct: 214 IEKVRGEALALIDWAESYSTDAFKKIPVSPGFSLMQKVIQFEDRFMKRGRNILSGYDASE 273

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV------TDIGS 343
           G        +F+     ++       +  +D     L+     AL   V      +    
Sbjct: 274 G-------ALFVLFHAALAAHPKSPTVCAVDNADHALNPRLAKALLTKVCGWYLDSPRPR 326

Query: 344 QIFMTGTDKSVFDSL---NETAKFMRIS 368
           QIF+T  +    D +   N+  +   +S
Sbjct: 327 QIFLTTHNPQALDGIPLQNDKVRLFTVS 354


>gi|12851088|dbj|BAB28937.1| unnamed protein product [Mus musculus]
 gi|26353126|dbj|BAC40193.1| unnamed protein product [Mus musculus]
          Length = 199

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|124505413|ref|XP_001351448.1| chromosome associated protein, putative [Plasmodium falciparum
          3D7]
 gi|75015107|sp|Q8I1U7|SMC3_PLAF7 RecName: Full=Structural maintenance of chromosomes protein 3
          homolog
 gi|23498206|emb|CAD49177.1| chromosome associated protein, putative [Plasmodium falciparum
          3D7]
          Length = 1193

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK + +  FR Y     + F       VG NG GK+NIL AI F+
Sbjct: 1  MYIKQIRLKGFRTYKNETTIDFTRGINCIVGFNGSGKSNILLAIEFI 47



 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 58/156 (37%), Gaps = 16/156 (10%)

Query: 207  ALSSLIMEYVQKENFPH-IKLSLTGFLDGKFDQSFCALKEEYAKK--LFDGRKMDSMSRR 263
             ++    EY           L L    + ++ +    + E+  K+  + +   +D ++  
Sbjct: 1009 KINKYFSEYFSLLFKNRKASLVLKKMNEKEYKEKLQEMSEKRIKRRIIDEEVYIDKITGI 1068

Query: 264  TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
            ++      D  + Y     TI   S GE+ +V + +FL       N          DEI 
Sbjct: 1069 SINITSNDDEKMTY-----TIQELSGGERSIVAICLFLCL-----NKIDNFSFFFFDEID 1118

Query: 324  AHLDEDKR---NALFRIVTDIGSQIFMTGTDKSVFD 356
            A LD   R   + L + +   G+Q  +T   K + +
Sbjct: 1119 AALDTIHRDNLSLLLKELAHRGTQFIITTFRKELLE 1154


>gi|49481915|gb|AAT66669.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A68]
          Length = 573

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 89/278 (32%), Gaps = 47/278 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + F+   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIYLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G        A +EG+  L D           + ++  +                 ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLNDETHPCYGKCAEVGIDISEGMVVLRREIFATGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFE 163
            ++   V+ E+   L           +            F    +      +R     +E
Sbjct: 112 KLVTTAVLREIGSTLVDIHGQHEHQELMDPARYLPLLDEFGGAEIAEALAEYRSVYEKYE 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSSLI 212
           +L +   +L       +     +  Q+ E+           ++   +V+++N   +   +
Sbjct: 172 QLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYEAL 231

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247
               +  +     L   G      D        LKE Y
Sbjct: 232 KHSYEALSGEQRGLDWIGLAMSHLDDVASIDPELKEVY 269


>gi|327480470|gb|AEA83780.1| chromosome segregation SMC protein, putative [Pseudomonas stutzeri
           DSM 4166]
          Length = 1162

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 106/324 (32%), Gaps = 44/324 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVSFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   GS +    T A +E +   +D            I +  R  R S     +N V
Sbjct: 61  MTDVIFNGSNTRKPVTQASIELIFDNSDGTLTGEYAAFAEISIRRRVTRDSQNTYFLNGV 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               + R F++             +
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAGI 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             ++   R     +   + + +  + +  ++     +++               E   K 
Sbjct: 171 SKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQSAEKYQEYKAEERQLKA 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH-------RSD 272
               ++        G+ +Q     +  +   + + R  D+   R   G H       +  
Sbjct: 231 QLSALRWQALNEQVGQREQVIGDQEVAFEALVAEQRSADASIERLRDGHHELSERFNQVQ 290

Query: 273 LIVDYCDKAITIAHGS--TGEQKV 294
                    I     S   G+Q++
Sbjct: 291 GRFYSVGGDIARVEQSIQHGQQRL 314


>gi|288920292|ref|ZP_06414605.1| OLD family toprim nucleotidyl transferase/hydrolase domain protein
           [Frankia sp. EUN1f]
 gi|288348316|gb|EFC82580.1| OLD family toprim nucleotidyl transferase/hydrolase domain protein
           [Frankia sp. EUN1f]
          Length = 641

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 97/344 (28%), Gaps = 43/344 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +    +  FR+     + F    T+ VG+N  GK+NI++A+   +P    R   Y + 
Sbjct: 1   MYLAEFTLKNFRSCRDTTVTFQRGLTLIVGENNSGKSNIIDALRLSTPPLSGRPTRYFEA 60

Query: 65  T---RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                 GS       AR  G+    +         +             RV  +L++  R
Sbjct: 61  DDDPSFGSRDDVELTARFAGLSHYQEGQYMALVDAEDGCLYYT---SRYRVEADLSQRER 117

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
              LV    +        R R        ++  +   + D +R +              S
Sbjct: 118 RVPLV-GRAKAVDSEPELRAR--------VNHVYLAPLRDAQREL---------DSARGS 159

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS-F 240
             S I   +       +  R + +        +        + +  +   +D        
Sbjct: 160 RLSHIIKYLIS-----DDDRDDFLAKAKDGFEKLADHPVVTNTRNDIHRHVDNLTTPVRP 214

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             +   +     +        +    G   +D+       A  +   S       ++   
Sbjct: 215 QRVGLGFELVRLERLTRGLRLKMAEHGLEPADIADSGLGYANLVFMAS-------VI--- 264

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
                L         + L++E  AHL    +  L   + +   Q
Sbjct: 265 ---LELEHAPDSELTLFLVEEPEAHLHPQLQAVLLDYLREKAEQ 305


>gi|164660398|ref|XP_001731322.1| hypothetical protein MGL_1505 [Malassezia globosa CBS 7966]
 gi|159105222|gb|EDP44108.1| hypothetical protein MGL_1505 [Malassezia globosa CBS 7966]
          Length = 957

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          ++I+ L I  F++Y     V  FD       G NG GK+NIL+AI F   L+     R +
Sbjct: 1  MRIEELIIDGFKSYPVRTHVRGFDPSFNAITGLNGSGKSNILDAICFVLGLTNLSSVRAS 60

Query: 60 SYADVT 65
          +  D+ 
Sbjct: 61 NMQDLI 66


>gi|110597462|ref|ZP_01385749.1| SMC protein-like [Chlorobium ferrooxidans DSM 13031]
 gi|110341006|gb|EAT59477.1| SMC protein-like [Chlorobium ferrooxidans DSM 13031]
          Length = 813

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RASYA 62
          ++I  +++++ +++    L F +   +  G NG GK+ + EAI +   G   R   ++  
Sbjct: 1  MQILSIHLTDIKSHRDTELSFSSGINVLSGANGSGKSTVFEAIGYALFGVDARDFVSNVD 60

Query: 63 DVTRIGSPSF--FSTFARVEGMEGLADISIK 91
              IGS       TF   +G E     ++ 
Sbjct: 61 RFISIGSKRGRISVTFKSDDGREWQVSRTVG 91


>gi|146296631|ref|YP_001180402.1| chromosome segregation protein SMC [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410207|gb|ABP67211.1| condensin subunit Smc [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 1177

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 101/278 (36%), Gaps = 30/278 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + IK+L I  F+++    R+ F    T  VG NG GK+NI +AI +    +     R + 
Sbjct: 1   MYIKWLEIYGFKSFCEKTRIEFQKGITAIVGPNGCGKSNITDAIRWALGEQSLKLLRASK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   G+       F       +  +G   I  +      R  R       IN    R
Sbjct: 61  LEDLIFAGTEKRRSQGFAEVSIYFDNSDGKLPIDFEEVVITRRLFRSGESEFFINKTACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I +    ER +  +         ++ R  + E
Sbjct: 121 LKDIYELFLDSGLGKDGYSIISQGRVDEIINARPFERYKIFEEACGITK--YKYRKEEAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R ++  +  +            +++Q+ E+  ++  A+V +   L+  + +  +++    
Sbjct: 179 RKLKNTHENILRLQ---DVIFELKSQLEEIAPEVEKAKVYI--ELNRKLSDLKREKYLFS 233

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            KL+   +          +LKE+  K   +  +++   
Sbjct: 234 YKLANENYKSTIAQ--IESLKEDLEKLTNNKLEIEKRL 269



 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 51/164 (31%), Gaps = 27/164 (16%)

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK--LFDGR 255
               RVE +           Q E+       L   ++           E + K   LF   
Sbjct: 992  LNERVEFLQR---------QIEDLEKTSKELKNLINELDKNMKNIFLENFEKIKLLFSEI 1042

Query: 256  KMDSMSRRTL---IGPHRSDLIVDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLI 307
              +  +  +    +     +  VD   K            S GE+ +  + +  A     
Sbjct: 1043 FKELFNGGSCDLKLIQDGEEFGVDIDVKPPGKKLQNINLLSGGEKALTAIALLFAFL--- 1099

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMT 348
                  + + +LDEI + LDE       + + ++ +Q   I +T
Sbjct: 1100 --MFKGSLLCILDEIDSSLDEANVQRFAQFLKNLNNQSQIIIVT 1141


>gi|254167742|ref|ZP_04874592.1| SMC proteins Flexible Hinge Domain [Aciduliprofundum boonei T469]
 gi|197623270|gb|EDY35835.1| SMC proteins Flexible Hinge Domain [Aciduliprofundum boonei T469]
          Length = 1178

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 26/169 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           + +K + +  F+++    RL F    T   G NG GK+NI +AI F+   +     R   
Sbjct: 1   MYLKAIELENFKSFGRKTRLEFKEGFTAISGPNGSGKSNITDAILFVLGPKSSKKIRAQR 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-------------IN 106
             D+   G  +   + + RV  +    D  + L+  + +  R ++             IN
Sbjct: 61  LTDLIYNGGKNGRPADYCRVSLIFDNRDRVLPLDEDEVKLTRYIKRANNELGYNSYFYIN 120

Query: 107 DVVIRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFLDRM 147
           D   R+ D  +  +                + RI     +ERR  LD +
Sbjct: 121 DEQARLQDFNSILIHAKIEADGYNFVQQGDVTRIVEMTPVERRTILDDI 169


>gi|94984929|ref|YP_604293.1| SMC protein-like protein [Deinococcus geothermalis DSM 11300]
 gi|94555210|gb|ABF45124.1| SMC protein [Deinococcus geothermalis DSM 11300]
          Length = 1100

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 6/114 (5%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
           ++ + +  F+++A   RL F    +  +G NG GK+N++EA+ +    +  R  R     
Sbjct: 2   LQSITLQGFKSFADRTRLEFGPGVSAVIGPNGSGKSNVVEALRWATHQARARELRAGRGT 61

Query: 63  DVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ-INDVVIRVVD 114
           ++   GS        A V+     A+  + +  R  R     Q +N    R  D
Sbjct: 62  ELIFHGSGGKAPLGLAEVQVELLTAEGRVNVTRRVYRDGTGEQDLNGRPARARD 115


>gi|326483522|gb|EGE07532.1| SMC5 protein [Trichophyton equinum CBS 127.97]
          Length = 1194

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 3/109 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I  + ++ F  Y S       +  + +G NG GK+  + AI   L  G  +  R    A+
Sbjct: 120 IVRVKLTNFVTYTSAECHPGPRLNMVIGPNGTGKSTFVCAICLGLGWGPSYLGRAKDVAE 179

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
             + G+             +   +  I    + + +     IN   +R 
Sbjct: 180 FVKHGADEAIIEIELKARADMDQNPIICRTIKREGNKSTFSINGTPVRQ 228


>gi|326430299|gb|EGD75869.1| hypothetical protein PTSG_07983 [Salpingoeca sp. ATCC 50818]
          Length = 1206

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60
           + IK + I  FR+Y        F   H + VG NG GK+N   AI F+        R   
Sbjct: 1   MHIKRVTIKGFRSYREQTFVEPFSPHHNVIVGRNGSGKSNFFFAIRFVLSDAFASLRAEE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
              +   G+       A VE +   +D  I  +  +    R + +
Sbjct: 61  RQRLLHEGA-GHAVMSAYVEIVFDNSDERIPTDRDEVTLRRSIGV 104



 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 13/205 (6%)

Query: 157  RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
            + +  +      R+ L++      S  S+I   +  L  + + A       ++S     V
Sbjct: 976  KALDQYISFSEQRDALVSRKDQQDSGDSAITELIQVLDAQKHEAINLTFKQVASHFKA-V 1034

Query: 217  QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
             KE  PH + SL         +S  +                 + + T        + V+
Sbjct: 1035 FKELVPHGEASLVMQRADPTAESQESGTLSAPDSDVPAHVR--LRQTTTTAYSGVAIRVN 1092

Query: 277  YCDKAITIAHGST---GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            +  K            G++ +V + +  A            P  L DE+   LD   R+A
Sbjct: 1093 FTGKGEDTHMLQQLSGGQKSLVALALIFA-----IQRCDPGPFYLFDEVDQALDPAHRSA 1147

Query: 334  LFRIV--TDIGSQIFMTGTDKSVFD 356
            + R++      +Q   T     + +
Sbjct: 1148 VARMIYKASRDAQYITTTFRPELLE 1172


>gi|160915313|ref|ZP_02077526.1| hypothetical protein EUBDOL_01322 [Eubacterium dolichum DSM 3991]
 gi|158433112|gb|EDP11401.1| hypothetical protein EUBDOL_01322 [Eubacterium dolichum DSM 3991]
          Length = 978

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 88/286 (30%), Gaps = 48/286 (16%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A   +  FD+     VG NG GK+NI +AI   L     +  R  S
Sbjct: 1   MFLKRIELQGFKSFADKSIITFDSDVIGIVGPNGCGKSNINDAIRWVLGEQSVKSLRGNS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            +DV   GS              F ++   +       +++ +L            IN  
Sbjct: 61  MSDVIFNGSAQRKPVNMAEVTLVFDNSRHLLNVDFEEVEVTRRLHRHSGEGE--YFINKT 118

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R+ D LN  +    L      I S             ERR   +             +
Sbjct: 119 PCRLKDILNLVMDT-GLGRDSLSIISQGNISAFADAKPEERRALFEEAAG---------V 168

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             + +                S    +E  +A L   I I     +N L     +     
Sbjct: 169 AKYRK----------RKSESLSKLHRMEENLARL-EDIIIELERQVNPLKRQAKKAEIYL 217

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
                  ++   +     ++     E   KK FD     +M   T+
Sbjct: 218 EKKQELETIEVSVLVDEIETLNESIEMLRKKAFDFEAQKAMHETTI 263


>gi|126179774|ref|YP_001047739.1| chromosome segregation protein SMC [Methanoculleus marisnigri JR1]
 gi|125862568|gb|ABN57757.1| condensin subunit Smc [Methanoculleus marisnigri JR1]
          Length = 1147

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 7/140 (5%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + I  L I  F+++A   ++ F    T+  G NG GK+NI++++ F   LS  RG R   
Sbjct: 1   MYITQLEIDNFKSFARKTKIPFFEGFTVVSGPNGSGKSNIIDSLLFVLALSGARGLRAEK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+  + S       A V           +   R           +  +    ++ + L
Sbjct: 61  LTDLINVNSG---KNTAEVTATFSDGTTIRRRIKRTPTGYYSYNYLNNRLCKQGDVIEFL 117

Query: 121 RISWLVPSMDRIFSGLSMER 140
               + P    +     + R
Sbjct: 118 AKIGIKPEGYNVVMQGDITR 137


>gi|330891797|gb|EGH24458.1| ATP-dependent endonuclease family protein [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 626

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 56/406 (13%), Positives = 106/406 (26%), Gaps = 104/406 (25%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           + +  + +  FR  A   +  +  HT F+GDN  GK+ +LEA+   L P R  R      
Sbjct: 1   MHLVRVRVQNFRGIAYGEVHLN-GHTAFIGDNNAGKSTLLEAVDLVLGPERLSR----RP 55

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRD----------------DRSVRCLQIND 107
           V       F++          +  I I++                    D   + L +  
Sbjct: 56  VI--DEHDFYAGTYVDPDKNEVVPIQIEVVVAGLSDEQLRHFRDHIEWWDSQAKTLLVGA 113

Query: 108 VVIRVVDELNKHLRISWLV---------------------PSMDRIFSGLSMER-RRFLD 145
                           +                       P    +      +R   FL 
Sbjct: 114 PPEGTDAPHVGAAIRVFFNGWYDVEEDDFAGDTFYATPEMPDGSYLRFSAPDKRKCGFL- 172

Query: 146 RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
                    + R +    R +      L  G    S    I        +++   R+ M 
Sbjct: 173 ---------YLRTLRTGARAL-----SLERG----SLLDVI--------LRLKETRLTMW 206

Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
             L   +      E     +L L    D           E+   ++ D    D + R   
Sbjct: 207 EDLLDQLRALPVGETEDIGEL-LVAVQDAVRHYVPSDWAEQPHMRVSD-LTRDMLRRTLT 264

Query: 266 IGPHRSDLIVDYCDKAITIAHGS----------TGEQKVVLVGI--FLAHARLISNTTGF 313
           +          +         GS          TG    +++ +   +A  +        
Sbjct: 265 V----------FMGTGAKRPDGSVYSAPYQHQGTGTINTLVLALLSIIAELK-------Q 307

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
           + I  ++E    L    +  +   +    +Q   T     V +  +
Sbjct: 308 SVIFAMEEPEIALPPHTQKRIINSLRQKSAQAIFTSHSPYVLEEFD 353


>gi|195486110|ref|XP_002091365.1| GE12281 [Drosophila yakuba]
 gi|194177466|gb|EDW91077.1| GE12281 [Drosophila yakuba]
          Length = 1179

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 18/124 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + +K L +  F++Y     +  FD + T   G NG GK+NIL++I F   +S  +  R +
Sbjct: 1   MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +           +G E   +IS+  +       + L IN 
Sbjct: 61  ALQDLVYKNGQAGITKATVTIVFDNTNPAQCPQGYEKCREISVARQVVVGGKNKFL-ING 119

Query: 108 VVIR 111
            +++
Sbjct: 120 KLVQ 123



 Score = 36.4 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 8/98 (8%)

Query: 263  RTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
             T       ++ V +  K   ++   S G++ +V + + LA  +        AP+ +LDE
Sbjct: 1058 HTNGCLTGLEIKVGFNGKWKESLGELSGGQKSLVALSLVLAMLKF-----SPAPLYILDE 1112

Query: 322  ISAHLDEDKRNALFRIVTD--IGSQIFMTGTDKSVFDS 357
            + A LD      +  ++      SQ  +      +F+ 
Sbjct: 1113 VDAALDMSHTQNIGSMLKQHFTNSQFLIVSLKDGLFNH 1150


>gi|327306567|ref|XP_003237975.1| DNA repair protein Rad18 [Trichophyton rubrum CBS 118892]
 gi|326460973|gb|EGD86426.1| DNA repair protein Rad18 [Trichophyton rubrum CBS 118892]
          Length = 1125

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 92/314 (29%), Gaps = 68/314 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++    G+     R  S   
Sbjct: 85  IERVDCYNFMCHEHFSVELGPLINFIVGKNGSGKSAILTALTLCLGGKASATNRGQSLKS 144

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI------SIKLETRDDRSV--------RCLQINDVV 109
             + G  S  +   R++     A +      SI +E    RS         +   I    
Sbjct: 145 FVKEGKESA-TIIVRIKNRGDGAYLPDTYGESIIVERHFTRSGSSGFRLKSKSGAIISTR 203

Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR--- 156
              +D +  +  +    P        +   + +    E+ +F      +  +D  +    
Sbjct: 204 RADLDCITDYFALQMDNPMNVLSQDMARQFLSASSPAEKYKFFMKGVQLEQLDHDYHMME 263

Query: 157 -------RRMIDFERLMR----GRN----------------RLLTEGYFDSSWCSSIEAQ 189
                   ++ D +  ++     RN                  +      ++W    E +
Sbjct: 264 ESIDQLQAKLHDHQEQLKVLESNRNNARARLAQSDRHESLRARIRHLRSQTAWIQVEEQE 323

Query: 190 MAE--LGVKINIARVEMINALS-------SLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                L  +I   R   I  L        +      Q+ N     + +        D S 
Sbjct: 324 RIRDSLIAEIAETR-ACIEQLESEAENRDAEFQAADQEVNEAREAVRIAKEAQAAIDDSK 382

Query: 241 CALKEEYAKKLFDG 254
             +K+ Y + + + 
Sbjct: 383 AEIKQRYDEAVKER 396


>gi|163782595|ref|ZP_02177592.1| citrate synthase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882168|gb|EDP75675.1| citrate synthase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 1158

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 108/281 (38%), Gaps = 32/281 (11%)

Query: 5   IK--IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFR 57
           +K  ++ + +  F++Y      +   +     VG NG GK+NI +A+SF   ++  +  R
Sbjct: 1   MKAFVEKIVVEGFKSYGRELKEIPIGSGFVAIVGPNGAGKSNIGDALSFALGIATTKTLR 60

Query: 58  RASYADVT--RIGSP---SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             + + +   R G     ++     R EG   + D ++ +  +  +  R   ++N V +R
Sbjct: 61  AKNLSYLIFSRDGEKAPYAYVEVHFRNEGAFPVPDENVVVSRKVTKDGRSTFKVNGVTVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161
             D         + ++     L   + +      +ERR+ ++    +   + + +R + D
Sbjct: 121 EKDLKDFLSKAGIYENGYNVVLQGDIVKFLKMTPVERRKVIEDVAGISEYEAKKQRAIND 180

Query: 162 FERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
              +   +R    LL E           + ++ +        R   I  LS  I ++  +
Sbjct: 181 LMEVDIKIRELKLLLEEIRIQLDKLKEEKDKLEKYRKLQEEKRDTEIAILSKEIKKFRSE 240

Query: 219 ENFPHIKLSLTGFL------DGKFDQSFCALKEEYAKKLFD 253
           E     +L            + +  ++  + KEE  K+L D
Sbjct: 241 EEKLSEELEGHQGRLAVIKEEIREKEAILSEKEEKLKELSD 281


>gi|56693118|ref|YP_164705.1| hypothetical protein LP65_gp070 [Lactobacillus phage LP65]
 gi|54633619|gb|AAV35890.1| orf70 [Lactobacillus phage LP65]
          Length = 638

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 1/112 (0%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K++ + I  FR+  SL    D+   T+  G NG GK++I  AI +    +  +  +   
Sbjct: 1   MKLETIKIRNFRSIRSLDFKIDSRGLTLISGKNGQGKSSIYAAILYALFNKTQKGQTADA 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
           +    +    S     E       +    + +++ +     +N+V       
Sbjct: 61  IINDVAKKNTSVILNYENAGVRYRVCRYRKHKENHNKVLFYVNEVEKTSSSN 112



 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 60/150 (40%), Gaps = 8/150 (5%)

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT--LIGPHRSDLIVDYCDKAITIA 285
           +  F+  +   +     E+Y   L DG    ++S  T    G     + +     A +  
Sbjct: 486 IKSFVLEQVYPAINESLEKYMSVLTDGSISATISAVTENKSGNVSDKINIKVFRDAESTD 545

Query: 286 H--GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
           +   S+GEQ+   V + L+    +S+ +G   +L LDEI   LD    + +  ++ +   
Sbjct: 546 YDSLSSGEQRRFDVALSLSLQDYVSSNSGIN-VLFLDEIFDSLDAVGVDKVMTLLKEKSK 604

Query: 344 Q---IFMTGTDKSVFDSLNETAKFMRISNH 370
           Q   +F+      + D+ +   K ++    
Sbjct: 605 QYSSVFVISHSTELKDNFDNEIKVVKTEAG 634


>gi|255582489|ref|XP_002532030.1| Structural maintenance of chromosome 1 protein, putative [Ricinus
           communis]
 gi|223528300|gb|EEF30346.1| Structural maintenance of chromosome 1 protein, putative [Ricinus
           communis]
          Length = 1220

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 9/128 (7%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           KI  L I  F++Y     +      T  +G NG GK+N+++AISF+   R    R A   
Sbjct: 9   KILKLEIENFKSYKGQQTIGPFKDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLK 68

Query: 63  DVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           D+      R         + R+  +           T         +I+  V+   DE N
Sbjct: 69  DLIYAYDDREKEQKGRRAYVRLVYLLASGSELHFTRTITSSGSSEYRIDGKVVNW-DEYN 127

Query: 118 KHLRISWL 125
             LR   +
Sbjct: 128 GRLRSLGI 135


>gi|323352714|ref|ZP_08087684.1| DNA repair protein RecN [Streptococcus sanguinis VMC66]
 gi|322121750|gb|EFX93496.1| DNA repair protein RecN [Streptococcus sanguinis VMC66]
          Length = 552

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 73/226 (32%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGS-------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+                       +G E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGASKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD         +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLHLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|157864643|ref|XP_001681030.1| structural maintenance of chromosome 3 protein [Leishmania major
           strain Friedlin]
 gi|68124324|emb|CAJ02179.1| putative adaptor complex protein (AP) 3 delta subunit 1 [Leishmania
           major strain Friedlin]
          Length = 1198

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 78/216 (36%), Gaps = 29/216 (13%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRAS 60
           + IK + IS FR+Y           +  + VG NG GK+N   AI F+   +    R A 
Sbjct: 1   MFIKNIIISGFRSYREQSFPDGLSPRTNVIVGKNGSGKSNFFAAIQFVLNEKFANLRTAE 60

Query: 61  YADVTRIGSPS----------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
             ++  +GS            F ++  R+       +  +++           ++ND   
Sbjct: 61  RKELFHVGSGRPALSVFVEIVFDNSDGRLVIPGRAEEPEVRIRRTVGLKQDEFRVNDRKF 120

Query: 111 RVVD--ELNKHLRISWLVPSM-------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
              D  +L +    S   P           + +    ER + +  +       +  R  +
Sbjct: 121 SASDVHQLLESAGFSSSNPYYVVEQGKIVSLVNMSEEERYQLIKDVAGT--KVYDARRAE 178

Query: 162 FERLM---RGRNRLLTEGYFD-SSWCSSIEAQMAEL 193
            E ++   +G+   +TE   +       +EA+ AEL
Sbjct: 179 SEHILAETKGKQGQITESIRELQRLLKELEAETAEL 214



 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 63/208 (30%), Gaps = 28/208 (13%)

Query: 163  ERLMRGRNRLLTEGYFDSSWCSSIEAQM---AELGVKINIARVEMINALSSLIMEYVQKE 219
             + +     L       +S   ++  ++    EL   ++  + E I      +       
Sbjct: 979  RKALDQHAALQETMKALTSQQGTLSKELDSIHELMEHLDAKKEEAIERTYKQVQYQ---- 1034

Query: 220  NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
             F  +   L G          C+ + +        +K D  +        R  +     +
Sbjct: 1035 -FEEVFKQLVGV-------ESCSAELQLVASAVPNKKEDPYTG------ARIKVSFGLGN 1080

Query: 280  KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV- 338
                +   S G++ +V + +  A           AP  L DEI A LD + R ++  ++ 
Sbjct: 1081 PVSHLEQLSGGQKSLVALALIFA-----IQRCDPAPFYLFDEIDAALDAEYRTSVANMMA 1135

Query: 339  -TDIGSQIFMTGTDKSVFDSLNETAKFM 365
                  Q  +      + D  ++     
Sbjct: 1136 RQSSECQFLVATFKTELLDVADKVLGIF 1163


>gi|326489775|dbj|BAK01868.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1175

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 56/149 (37%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA   +V  FD       G NG GK+NIL++I F   ++  R  R A
Sbjct: 1   MHIKEVCLEGFKSYAGRTVVPGFDPLFNAITGLNGSGKSNILDSICFVLGITDLRAVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++  + G          +            G E  A+I++  +       + L IN 
Sbjct: 61  SLQELVYKQGQAGVTKATVSIVFDNSDRARSPLGYEDSAEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            + +          +   V +   +    
Sbjct: 120 HLAQPSRVQTLFHSVQLNVNNPHFLIMQG 148


>gi|254829875|ref|ZP_05234530.1| DNA repair and genetic recombination [Listeria monocytogenes
           10403S]
          Length = 563

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG      AD  R
Sbjct: 2   LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G               +     A +E     +D  + LE    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    +     +++    +++ + + 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEYQTIEKE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197


>gi|16803408|ref|NP_464893.1| DNA repair and genetic recombination [Listeria monocytogenes EGD-e]
 gi|47095951|ref|ZP_00233554.1| DNA repair protein RecN [Listeria monocytogenes str. 1/2a F6854]
 gi|224501689|ref|ZP_03669996.1| DNA repair and genetic recombination [Listeria monocytogenes FSL
           R2-561]
 gi|254898467|ref|ZP_05258391.1| DNA repair and genetic recombination [Listeria monocytogenes J0161]
 gi|254912042|ref|ZP_05262054.1| DNA repair protein RecN [Listeria monocytogenes J2818]
 gi|254936369|ref|ZP_05268066.1| DNA repair protein RecN [Listeria monocytogenes F6900]
 gi|16410784|emb|CAC99446.1| DNA repair and genetic recombination [Listeria monocytogenes EGD-e]
 gi|47015697|gb|EAL06627.1| DNA repair protein RecN [Listeria monocytogenes str. 1/2a F6854]
 gi|258608960|gb|EEW21568.1| DNA repair protein RecN [Listeria monocytogenes F6900]
 gi|293590008|gb|EFF98342.1| DNA repair protein RecN [Listeria monocytogenes J2818]
          Length = 563

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG      AD  R
Sbjct: 2   LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G               +     A +E     +D  + LE    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    +     +++    +++ + + 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEYQTIEKE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197


>gi|332975044|gb|EGK11950.1| hypothetical protein HMPREF0476_0190 [Kingella kingae ATCC 23330]
          Length = 686

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT----IFVG-DNGVGKTNILEAISF 49
          + I  + +  F++YA     F         + +G +NG GKT +LEAI  
Sbjct: 1  MWISKIKLHNFKSYADAEFTFPEPQNGKNLVLIGAENGHGKTTLLEAIYL 50


>gi|217964486|ref|YP_002350164.1| DNA repair protein RecN [Listeria monocytogenes HCC23]
 gi|217333756|gb|ACK39550.1| DNA repair protein RecN [Listeria monocytogenes HCC23]
 gi|307570950|emb|CAR84129.1| DNA repair protein [Listeria monocytogenes L99]
          Length = 563

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG      AD  R
Sbjct: 2   LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G               +     A +E     +D  + LE    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    +     +++    +++ + + 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEYQTIEKE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197


>gi|92112829|ref|YP_572757.1| chromosome segregation protein SMC [Chromohalobacter salexigens DSM
           3043]
 gi|91795919|gb|ABE58058.1| Chromosome segregation protein SMC [Chromohalobacter salexigens DSM
           3043]
          Length = 1164

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/372 (14%), Positives = 115/372 (30%), Gaps = 55/372 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + +  F+++  ++ + F    T  VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLTSIKLVGFKSFVDAVNVPFAGNMTAIVGPNGCGKSNIIDAVRWVMGESSAKTLRGES 60

Query: 61  YADVTRI--------GSPSFFSTFARVEGMEG-----LADISIKLETRDDRSVRCLQIND 107
             DV           G  S    F   +G  G      A+IS+K +   D        N 
Sbjct: 61  MTDVIFNGSTGRSPVGQASIELVFDNSDGTMGGAYAQYAEISVKRQVTRDSQSNYFF-NG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
              R  D ++     + L P    I     + R                  +  ++   R
Sbjct: 120 QKCRRRD-ISDLFLGTGLGPRSYAIIGQGMISRLVEARPEELRSTLEEAAGISKYKERRR 178

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                L     +      I  ++            + +  L        + +     +  
Sbjct: 179 ETENRLRRTQENLERLDDIREEL-----------DKQLERLKRQADAARRYQTLKDDEYR 227

Query: 228 LTG---FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP------HRSDLIVDYC 278
           L G    L G+  +S    +E   ++L    + + + +R              ++  +  
Sbjct: 228 LKGELALLRGRALRSQQEGQERQVRELETQVEREILGQRQCESQLEESRLAHDEIAAELE 287

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL---------DED 329
                     TG      +   +  +   + +        +D+    L         D++
Sbjct: 288 AHQ--ARFYETG----AAIA-RIEQSIEHARSRDQQLAQDIDDARRELTELEQLGAHDDE 340

Query: 330 KRNALFRIVTDI 341
           +R AL   +  I
Sbjct: 341 RRAALDERLESI 352


>gi|67526005|ref|XP_661064.1| hypothetical protein AN3460.2 [Aspergillus nidulans FGSC A4]
 gi|40743814|gb|EAA63000.1| hypothetical protein AN3460.2 [Aspergillus nidulans FGSC A4]
          Length = 1548

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 95/286 (33%), Gaps = 40/286 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +   ++         VG NG GK+ +L AI+    G+     R  S   
Sbjct: 106 LERVECYNFMCHDHFQVELGPLINFIVGKNGSGKSAVLTAITLCLGGKASTTNRGQSLKS 165

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI------SIKLETRDDRSV----RCLQIND----VV 109
             + G  S  +   R++     A +      SI +E    +S     +    N       
Sbjct: 166 FIKEGKESA-TIIVRIKNQGDGAYLPDDLGKSIIVERHFSKSGASSFKIKADNGRIFSTK 224

Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRM 159
              +D +  H  + +  P        +   + S    E+ +F      +  +D  + R +
Sbjct: 225 RTELDAIIDHFTLQFENPMNVLSQDMARQFLSSSSPAEKYKFFVKGVQLEQLDQDY-RLI 283

Query: 160 IDFERLMRGRNRLLTEGYFDSSWC----SSIEAQMAELGVKINIARVEMINALSSLIMEY 215
            ++   +  +   +     D S       + E ++ E+  +    R             +
Sbjct: 284 EEYGDQIEEK---IKSKQQDVSVLKNRRDAAERKL-EMSDQQENLRER--QRKLRRQAAW 337

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            Q E    I+ SL   +    D     ++ E A+     R++++ +
Sbjct: 338 AQVEEQERIRDSLIAEIS-SLDSKISEVEAEVARCDAAIREVEAEA 382


>gi|328771443|gb|EGF81483.1| hypothetical protein BATDEDRAFT_34779 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1127

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 16/137 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63
           I+ + +  F  ++ L++   ++    VG NG GK+ IL A++    G+ GF  R  +   
Sbjct: 83  IERVELVNFMCHSYLQVSLGSKINFIVGHNGSGKSAILTALTVCLGGKAGFTNRGNNLKA 142

Query: 64  VTRIGSP-SFFSTFARVEGME--------GLADISIKLETRDDRSVRCLQINDVVIRV-- 112
           + + G   +  +   R +G +            +  K+      S +   ++   +    
Sbjct: 143 LIKTGEDVASVTVKIRNKGPDAYKASVYGDSITVERKIVRDGQNSYKIRDVHGHTVSTSH 202

Query: 113 --VDELNKHLRISWLVP 127
             +  +N H++I    P
Sbjct: 203 GDLMSINDHMQIVVDNP 219


>gi|46907594|ref|YP_013983.1| DNA repair protein RecN [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|226223969|ref|YP_002758076.1| DNA repair and genetic recombination protein RecN [Listeria
           monocytogenes Clip81459]
 gi|254993063|ref|ZP_05275253.1| DNA repair and genetic recombination protein RecN [Listeria
           monocytogenes FSL J2-064]
 gi|255521542|ref|ZP_05388779.1| DNA repair and genetic recombination protein RecN [Listeria
           monocytogenes FSL J1-175]
 gi|46880862|gb|AAT04160.1| DNA repair protein RecN [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876431|emb|CAS05140.1| DNA repair and genetic recombination protein RecN [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|328467506|gb|EGF38575.1| DNA repair and genetic recombination protein RecN [Listeria
           monocytogenes 1816]
 gi|332311809|gb|EGJ24904.1| DNA repair protein RecN [Listeria monocytogenes str. Scott A]
          Length = 563

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG      AD  R
Sbjct: 2   LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G               +     A +E     +D  + LE    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    +     +++    +++ + + 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEYQTIEKE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197


>gi|327489510|gb|EGF21303.1| DNA repair protein RecN [Streptococcus sanguinis SK1058]
          Length = 552

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 73/226 (32%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD         +   ++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLHLKGLYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|323464671|gb|ADX76824.1| chromosome segregation SMC protein [Staphylococcus pseudintermedius
           ED99]
          Length = 1190

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 93/272 (34%), Gaps = 38/272 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     R  R + 
Sbjct: 2   VYLKSIDAYGFKSFAEATQIQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSARSLRGSK 61

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             D+   G+       FA V+     +   +  +  +    R L  N           R 
Sbjct: 62  MEDIIFSGAQHRNAQNFAEVQLKLDNSKGLLNFDATEVIVTRRLYRNGDSEFYVNNERRR 121

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++++    S L      I S             +RR+ ++     +            
Sbjct: 122 LKDIHELFLDSGLGKEAFSIISQGRVDEVLNAKPTDRRQIIEESAGVL------------ 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           +  + +   L +        + +E  + +L       RVE +   +++  EY+Q  +   
Sbjct: 170 KYKKRKEASLEKLSHTEDNLTRVEDILYDL-----EGRVEPLKEEAAIAKEYLQLSDILK 224

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
                    D    Q+  A  +    +L   +
Sbjct: 225 ESDIRVTVHDIVSHQTQIAEHDTALNELKSQQ 256


>gi|119871816|ref|YP_929823.1| SMC domain-containing protein [Pyrobaculum islandicum DSM 4184]
 gi|119673224|gb|ABL87480.1| SMC domain protein [Pyrobaculum islandicum DSM 4184]
          Length = 702

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 3/111 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA---SYAD 63
           I+ + +  F+ +A     F        G NG GKT+I+EA+S    G  + R     ++D
Sbjct: 2   IRKIELYNFKAHAKAVFKFGEGVNFIYGPNGSGKTSIMEAVSIALFGSQWVRRVGGRWSD 61

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             + G+             + +  +    E     S   L I+  V+   D
Sbjct: 62  YLKRGASVGEVRLFLNHMGQEVLIVRRFGEEGSSTSGTYLAIDGAVVARGD 112



 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 63/163 (38%), Gaps = 11/163 (6%)

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                 IE ++ E+  ++   R E +  L   +          +I++ +           
Sbjct: 524 KRQLEDIERELIEVEKELEKNRYE-VQKLDKALGIAR------NIRVVIGELKPLARQIL 576

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGP-HRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
             A+ EE        R  +      L+    +  + V+     I     S GEQ ++ + 
Sbjct: 577 TKAINEELNSIFLKLRHKEVFRSVQLVEIDGKYSIRVNTPAGYIDHRLLSLGEQNLLAIS 636

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
           + +A AR +    G AP ++ DE + HLDE+ R  +  ++ D+
Sbjct: 637 LRVALARAL---LGGAPFMMFDEPTEHLDEEHRRKIVELIRDL 676


>gi|88706805|ref|ZP_01104506.1| predicted ATP-dependent endonuclease, OLD family protein
          [Congregibacter litoralis KT71]
 gi|88698986|gb|EAQ96104.1| predicted ATP-dependent endonuclease, OLD family protein
          [Congregibacter litoralis KT71]
          Length = 617

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++I  L I  +R+  SL    D+  T+  G NG GK+NIL+AI+ 
Sbjct: 1  MRITNLKIKNYRSIESLNTRLDS-LTMLCGPNGSGKSNILKAITL 44


>gi|319892232|ref|YP_004149107.1| Chromosome partition protein smc [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161928|gb|ADV05471.1| Chromosome partition protein smc [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 1190

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 93/272 (34%), Gaps = 38/272 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     R  R + 
Sbjct: 2   VYLKSIDAYGFKSFAEATQIQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSARSLRGSK 61

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-------VVIRV 112
             D+   G+       FA V+     +   +  +  +    R L  N           R 
Sbjct: 62  MEDIIFSGAQHRNAQNFAEVQLKLDNSKGLLNFDATEVIVTRRLYRNGDSEFYVNNERRR 121

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++++    S L      I S             +RR+ ++     +            
Sbjct: 122 LKDIHELFLDSGLGKEAFSIISQGRVDEVLNAKPTDRRQIIEESAGVL------------ 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           +  + +   L +        + +E  + +L       RVE +   +++  EY+Q  +   
Sbjct: 170 KYKKRKEASLEKLSHTEDNLTRVEDILYDL-----EGRVEPLKEEAAIAKEYLQLSDILK 224

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
                    D    Q+  A  +    +L   +
Sbjct: 225 ESDIRVTVHDIVSHQTQIAEHDTALNELKSQQ 256


>gi|221061023|ref|XP_002262081.1| chromosome segregation protein [Plasmodium knowlesi strain H]
 gi|193811231|emb|CAQ41959.1| chromosome segregation protein, putative [Plasmodium knowlesi
           strain H]
          Length = 1217

 Score = 56.5 bits (135), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 19/145 (13%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + I+ + +  F++Y +  +   F  Q     G NG GK+N+L+AI F+         R  
Sbjct: 1   MHIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60

Query: 60  SYADVT-RIGSPSFFSTFARV------------EGMEGLADISIKLETRDDRSVRCLQIN 106
              ++  + G          +            E    + +I+I  +       R L  +
Sbjct: 61  RLDELIYKQGQAGITKGSVTIKFNNEQKPSPLQEPYRDMKNITITRQIVLGGRNRYLLNS 120

Query: 107 D-VVIRVVDELNKHLRISWLVPSMD 130
                + + +  + L+++   P   
Sbjct: 121 HNAKPKDISDFFQSLKLNINNPHFL 145


>gi|326564120|gb|EGE14358.1| condensin subunit Smc [Moraxella catarrhalis 46P47B1]
          Length = 1208

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 58/300 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K L ++ F+++A+     F    T  VG NG GK+N+++AI ++   +  +  R  +
Sbjct: 1   MRLKSLKLAGFKSFANPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60

Query: 61  YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105
            +DV   G       + A VE       +    I  +L    + S+R            I
Sbjct: 61  MSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQELSLRRQVTKEGKSDYFI 120

Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-- 155
           N   +R  D         L            + RI     M+ R F++        R+  
Sbjct: 121 NGQRVRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEGAG--VSRYQA 178

Query: 156 ---------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                           +R+ D +  ++ +++ L      +    ++  ++  L       
Sbjct: 179 RRAETEKKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQALNDELKTL------Q 232

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           + E+I  L      + QK     I+   +G +  K D     ++ E    L   R  ++ 
Sbjct: 233 KEELIRRLFEAWHHHEQK----KIEQGKSGEVLAKLDAKANQVRREL--DLLSARVAEAQ 286


>gi|313608924|gb|EFR84681.1| DNA repair protein RecN [Listeria monocytogenes FSL F2-208]
          Length = 563

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG      AD  R
Sbjct: 2   LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G               +     A +E     +D  + LE    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    +     +++    +++ + + 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEYQTIEKE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197


>gi|225870052|ref|YP_002745999.1| DNA repair protein [Streptococcus equi subsp. equi 4047]
 gi|225699456|emb|CAW92962.1| putative DNA repair protein [Streptococcus equi subsp. equi 4047]
          Length = 553

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 89/259 (34%), Gaps = 27/259 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ L   R     +  +V R
Sbjct: 2   LLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMLLGAR-----ASTEVIR 56

Query: 67  IGS-----PSFFSTFA--RVEGMEGLADISIKLETRDDR-----SVRCLQIND--VVIRV 112
            G+       FFS  A   +  +   + IS++ E    R          +IN   V +  
Sbjct: 57  HGADKAEIEGFFSVDANPHLAAVLAESGISMEEELILRRDIFANGRSVSRINGQMVTVST 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRR----FLDRMVFAIDPRHRRRMIDFERLMRG 168
           + +L + L    +    D+         +     F D     +   +++    ++ L R 
Sbjct: 117 LKKLGQFL--VDIHGQHDQEELMRPQLHQHILDSFGDEAFDQLKQSYQQIFDRYKALRRQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMIN-ALSSLIMEYVQKENFPHIKL 226
                       +    +  Q+ E+    +     +++N     L+      +      L
Sbjct: 175 ALEKQKNEKEHQARLDLLAFQIGEIEAADLVRGEDDLLNQERQRLLNHKKIADTLTSAYL 234

Query: 227 SLTGFLDGKFDQSFCALKE 245
           SL         Q   ++ E
Sbjct: 235 SLDNEDFSSLSQVRSSMNE 253


>gi|261417752|ref|YP_003251434.1| DNA repair protein RecN [Geobacillus sp. Y412MC61]
 gi|319767436|ref|YP_004132937.1| DNA repair protein RecN [Geobacillus sp. Y412MC52]
 gi|261374209|gb|ACX76952.1| DNA repair protein RecN [Geobacillus sp. Y412MC61]
 gi|317112302|gb|ADU94794.1| DNA repair protein RecN [Geobacillus sp. Y412MC52]
          Length = 573

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 92/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G+       A +EG+  L D           + ++  D                 +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   V+ ++   L           +           LD             +  + R 
Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  R   L          S  E QMA         R++++       +E    E     +
Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALELGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + AL++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|254167241|ref|ZP_04874094.1| SMC proteins Flexible Hinge Domain [Aciduliprofundum boonei T469]
 gi|197624097|gb|EDY36659.1| SMC proteins Flexible Hinge Domain [Aciduliprofundum boonei T469]
          Length = 1178

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 26/169 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           + +K + +  F+++    RL F    T   G NG GK+NI +AI F+   +     R   
Sbjct: 1   MYLKAIELENFKSFGRKTRLEFKEGFTAISGPNGSGKSNITDAILFVLGPKSSKKIRAQR 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-------------IN 106
             D+   G  +   + + RV  +    D  + L+  + +  R ++             IN
Sbjct: 61  LTDLIYNGGKNGRPADYCRVSLIFDNRDRVLPLDEDEVKLTRYIKRANNELGYNSYFYIN 120

Query: 107 DVVIRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFLDRM 147
           D   R+ D  +  +                + RI     +ERR  LD +
Sbjct: 121 DEQARLQDFNSILIHAKIEADGYNFVQQGDVTRIVEMTPVERRTILDDI 169


>gi|167533572|ref|XP_001748465.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772984|gb|EDQ86629.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1072

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 3/113 (2%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
            I+ + +  F  Y+ +         + +G NG GK+ ++ AI     G+     R   Y 
Sbjct: 41  AIRRIYMENFVTYSKVEFHVGPGLNVILGPNGSGKSTVICAICLCLAGKPELLGRATHYK 100

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
              R              G      +   +    + + +      +  R   E
Sbjct: 101 QFIRTNEDRAVIEVELDMGKNAPLTVRRVMTIDRNNNGKASSNFSLNGRPATE 153


>gi|315053535|ref|XP_003176141.1| chromosomes protein 5 structural maintenance [Arthroderma gypseum
           CBS 118893]
 gi|311337987|gb|EFQ97189.1| chromosomes protein 5 structural maintenance [Arthroderma gypseum
           CBS 118893]
          Length = 1196

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 94/314 (29%), Gaps = 29/314 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I  + ++ F  Y S       +  + +G NG GK+  + AI   L  G  +  R    A+
Sbjct: 122 IVRVKLTNFVTYTSAECHPGPRLNMVIGPNGTGKSTFVCAICLGLGWGPAYLGRAKDVAE 181

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDEL------ 116
             + G+         ++  EG+    I   T      +    IN   +R    L      
Sbjct: 182 FVKHGADEAI-IEIELKAREGMNQNPIICRTIKREGNKSTFTINGQSVRQNVVLSLAKSF 240

Query: 117 -NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
             +   +   +P                      A  P   +   D + L  G+  +L E
Sbjct: 241 SIQIDNLCQFLPQDKVSEFAALSPVELLHSTQRAAAGPEMAKWHDDLKELRSGQKDILEE 300

Query: 176 GYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFL 232
                   +++E   QM    V+    R E+   L    +E ++    F   +   +  L
Sbjct: 301 SASQREHLANLEKRQQMQREDVERMKQREEVKKRLK--FLEMLRPLPRFNSCRRESSAIL 358

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST-GE 291
           + K  Q     +EE  +KL    +             + D               S  GE
Sbjct: 359 EQK--QRLMREQEELKQKLEPALRA---------VNSKRDYYTQVEAVLRQKRLSSQNGE 407

Query: 292 QKVVLVGIFLAHAR 305
           +    +   L    
Sbjct: 408 EAAAAISEKLIQVD 421


>gi|302824711|ref|XP_002993996.1| hypothetical protein SELMODRAFT_137981 [Selaginella moellendorffii]
 gi|300138158|gb|EFJ04936.1| hypothetical protein SELMODRAFT_137981 [Selaginella moellendorffii]
          Length = 1172

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF-LSPGR--GFRRA 59
           + +K +++  F++YA+      FD       G NG GK+NIL++I F L   +    R +
Sbjct: 1   MFVKEISLEGFKSYATSTFVSNFDPCFNAITGLNGSGKSNILDSICFVLGITKLEQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          V            G E +++I++  +       + L IN 
Sbjct: 61  NLNELVYKQGQAGVTKATVSVTFDNSDRSRSPIGFEDMSEITVTRQVVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            V +     N    +   V +   +    
Sbjct: 120 HVAQPSRVQNLFHSVQLNVNNPHFLIMQG 148


>gi|224541341|ref|ZP_03681880.1| hypothetical protein CATMIT_00501 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525778|gb|EEF94883.1| hypothetical protein CATMIT_00501 [Catenibacterium mitsuokai DSM
           15897]
          Length = 978

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 101/323 (31%), Gaps = 54/323 (16%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K + +  F+++A   +  F    T  VG NG GK+NI +AI ++   +     R  +
Sbjct: 1   MYLKRIELHGFKSFADKSVVEFMPGITGIVGPNGCGKSNITDAIRWVLGEKSAKAMRGET 60

Query: 61  YADVT--------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV           G       F   +         +++  R  R+      +N    R
Sbjct: 61  MTDVIFSGSEDRKAQGEAEVTLVFNNEDHFLDFDSTEVEITRRLYRTGDSEFLLNREQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161
           + D         L +         +++        +RR   +    V     R    +  
Sbjct: 121 LKDITDLIMDTGLGRDSLSIISQNNINEFVKSKPEDRRAMFEEAAGVAKYKKRKIETVRK 180

Query: 162 FERL-------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
            ER              +  +   L      +      + ++ E+ V + +  +  ++  
Sbjct: 181 LERTTDNLDRVQDICSELERQIGPLKRQKEKAETYLEFKEELQEVEVSVLVKEISTLSEE 240

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGK-----------FDQSFCALKEEYAKKLFD---- 253
              + + ++      I       LD K            DQ    L+E+  + + +    
Sbjct: 241 LKTLNKELEDLENERITNDGAVILDEKQSEELEKKMYALDQEVNELQEKLLEAMNEVSSL 300

Query: 254 ---GRKMDSMSRRTLIGPHRSDL 273
                ++D+  +  L    + D+
Sbjct: 301 ETQKVEIDANRKHILETTSQEDI 323


>gi|123501445|ref|XP_001328078.1| SMC family, C-terminal domain containing protein [Trichomonas
          vaginalis G3]
 gi|121911016|gb|EAY15855.1| SMC family, C-terminal domain containing protein [Trichomonas
          vaginalis G3]
          Length = 1177

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 1  MTNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--F 56
          M+ R+ +  + +  F++Y   ++   F+ Q T  VG NG GK+N+++A+ F+   R    
Sbjct: 1  MSERLIVTQIVLENFKSYYGRQIVGPFNNQLTCIVGPNGSGKSNLIDALLFVFGFRAKRM 60

Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLA 86
          R +    +   G      ++ARVE     A
Sbjct: 61 RHSKLTGLIYNGPDHPNISYARVEVHFAKA 90


>gi|114763721|ref|ZP_01443115.1| SMC protein [Pelagibaca bermudensis HTCC2601]
 gi|114543722|gb|EAU46735.1| SMC protein [Roseovarius sp. HTCC2601]
          Length = 1151

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 106/305 (34%), Gaps = 36/305 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+ ++   +  +  R + 
Sbjct: 1   MRFSRLRLTGFKSFVDPTDLVISEGLTGVVGPNGCGKSNLLEALRWVMGETRAKAMRGSG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+ S     F      ++  + LA         +++  R  R V    + N  
Sbjct: 61  MEDVIFAGASSRPARNFAEVCLTMDNSDRLAPAGFNDSDQLEIVRRITRDVGSAYKTNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR-----MVFAIDPRH 155
            +R  D   L          P++ R      + +     RRR L+       ++      
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKNRRRILEEAAGISGLYQRRHEA 180

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE----MINALSSL 211
             ++   E  +   + ++ +     S       Q A         R      +       
Sbjct: 181 ELKLNGTEANLLRVDDVIEQLAAQLSQLERQAKQAARYRAIGTDLRRAEGLLLYRRWKEA 240

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL--IGPH 269
               ++ E     +++     +G   ++   L+ E  + L   R+ ++++   L  +G  
Sbjct: 241 DEARLKAEAEHRERVTAAAQAEGT-ARAAAKLRAEREEALPSLREEEAIAVAILQRLGVQ 299

Query: 270 RSDLI 274
           R  L 
Sbjct: 300 RDALA 304


>gi|330835101|ref|YP_004409829.1| SMC domain-containing protein [Metallosphaera cuprina Ar-4]
 gi|329567240|gb|AEB95345.1| SMC domain-containing protein [Metallosphaera cuprina Ar-4]
          Length = 859

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 2/77 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ +++ +F ++   ++ F  +  + +G NG GK++I++AI+F +  +  R  + +++
Sbjct: 1  MRIESVSLKDFLSHDRTQVNFKGEINVIIGQNGAGKSSIIDAITF-ALFKEARE-NVSEL 58

Query: 65 TRIGSPSFFSTFARVEG 81
           R GS S        EG
Sbjct: 59 IRKGSKSAEVELILKEG 75



 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            + + I   S GE+  + + + +A AR +    G    ++LDE + HLD ++R  L  I+
Sbjct: 759 GQELQIGLLSGGERIALALALRIAIARSLM---GELGFMILDEPTTHLDSERRTELLSII 815

Query: 339 TDIGS---QIFMTGTDKSVFD 356
            D  +   QI +   D+ V  
Sbjct: 816 RDSMNVVPQIIVVTHDEEVLQ 836


>gi|323479630|gb|ADX79069.1| putative ATP-dependent endonuclease of the OLD family protein
           [Enterococcus faecalis 62]
          Length = 618

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 55/395 (13%), Positives = 120/395 (30%), Gaps = 81/395 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR-------- 58
           IK L I  ++ Y S+ L       + +G N VGKT++LEA+        ++R        
Sbjct: 5   IKELRIRNYKCYESIDLDLKDS-NLLLGVNNVGKTSLLEALELCFT--PYKRISEEIVFV 61

Query: 59  ------ASYADVT---------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
                 +    +          R  +  +F  F  +   E               +++  
Sbjct: 62  KKNEILSKDKSIILDILIESKEREFTDDWFDLFGVLIFDEDEKQY-----VGIRTTIKYN 116

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR-HRRRMIDF 162
            +N         + +    SW        F   + +R   + + +    P  +     D 
Sbjct: 117 PVNGEYQ-----IERKGMNSWPSSDEVETFDNFATDR---ITKSIIEAFPVFYLDAKRDI 168

Query: 163 ERLMRGR----NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
              M  +     RL+ +        + +E  + E+   I     E++  LS  + E  Q 
Sbjct: 169 ASEMNDKYSYFGRLVKDIKLSEENLTEMERHLNEINDNIVEN-SEVLKHLSVSLNEISQV 227

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
            +     + +   +  K       ++  +  K  +                         
Sbjct: 228 LDSGESSIQI-NPVSRKIKDLNQGMEIRFMDKKSES--------------------FSIN 266

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHA------RLISNTTGFAPILLLDEISAHLDEDKRN 332
           ++ +          +     + L+         +    + F PILLL+E  AHL    + 
Sbjct: 267 NQGMGT--------RSWATFLTLSAYIKWKTKEMADKESAFHPILLLEEPEAHLHPQAQR 318

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
            ++  +  +  Q  ++ T   +  S     + + +
Sbjct: 319 KIYSQMNKLDGQKVIS-THSPIIASQANIEEIIHV 352


>gi|320580922|gb|EFW95144.1| chromosomal ATPase, putative [Pichia angusta DL-1]
          Length = 1216

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 73/189 (38%), Gaps = 30/189 (15%)

Query: 6   KIKFLNISEFRNYASLR-LVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           ++  L +  F++Y  +  + F +   T  +G NG GK+N+++AISF+   +    R  + 
Sbjct: 3   RLVGLELYNFKSYRGISSIGFGSSFFTSIIGPNGSGKSNMMDAISFVLGIKSSHLRSNNL 62

Query: 62  ADVTRIG----------SPSFFSTFARVEGMEGLADISIKLETR--DDRSVRCLQINDVV 109
            D+   G                  A V  +   ++  I    R  ++      +IN+  
Sbjct: 63  KDLIYRGRVLGESDDGEEKENDPCTAYVMAIYEKSNGDILKLKRSINETGTSEYRINNKT 122

Query: 110 I---------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
           +         R  + L K          +++I S    E  R ++ +  +ID +      
Sbjct: 123 VSATQYADVLRKENILIKARNFLVFQGDVEKIASQSPEELTRLIENISGSIDHK-----K 177

Query: 161 DFERLMRGR 169
           D++ LM  +
Sbjct: 178 DYDVLMEEK 186


>gi|312622589|ref|YP_004024202.1| chromosome segregation protein smc [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203056|gb|ADQ46383.1| chromosome segregation protein SMC [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1177

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 21/174 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + IK+L I  F+++    R+ F+   T  VG NG GK+NI +AI +    +     R A 
Sbjct: 1   MYIKWLEIYGFKSFCEKTRIEFEKGITAIVGPNGCGKSNITDAIRWALGEQSLKLLRAAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+       F       +   G+  I    + +  R  RS      IN +  R
Sbjct: 61  QEDLIFAGTEKRKSQGFAEVSICFDNSSGVLPIDYQEVVITRRLFRSGESEFFINKIPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
           + D         L K          +D I +   +ER R  +        ++R+
Sbjct: 121 LKDVYELFLDSGLGKDGYSIISQGRVDEIINARPVERYRIFEEACGITKYKYRK 174



 Score = 38.0 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 60/171 (35%), Gaps = 35/171 (20%)

Query: 195  VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
             K    R++ +      + +    +    +   L   +   F ++F  +K  +++  F+ 
Sbjct: 989  EKRLQERMQFLQKQIEDLQKTT--DELKRLISHLEKNMKEIFLENFEKIKSLFSEIFFE- 1045

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAI--------------TIAHGSTGEQKVVLVGIF 300
                      L G    DL +   D  +               I   S GE+ +V + + 
Sbjct: 1046 ----------LFGGGSCDLKLIGQDGELGVDIDVKPPGKKLQNINLLSGGEKALVAIALL 1095

Query: 301  LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMT 348
             A       T   + + +LDEI + LDE       + + ++ +Q   I +T
Sbjct: 1096 FAFL-----TFKGSLLCILDEIDSSLDEANVQRFAQYIKNLNNQSQIIIVT 1141


>gi|308271408|emb|CBX28016.1| hypothetical protein N47_G33400 [uncultured Desulfobacterium sp.]
          Length = 1061

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 51/246 (20%), Positives = 84/246 (34%), Gaps = 36/246 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+K L IS F+++     + F A     VG NG GK+NI++A+ ++   +     R  S
Sbjct: 7   MKLKSLEISGFKSFNDKANIEFPAGVCAIVGPNGCGKSNIVDALKWVMGEQSVKQLRGKS 66

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-------INDV 108
             DV   G+      +       +    G A   +K       + R  +       +N  
Sbjct: 67  MEDVIFAGANGKPQLNMAEVSLTLANDNGSAPEELKDFAEIMLTRRLYRSGESEYYLNKR 126

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             R+ D         L           ++  I      ERR F++        R+  R  
Sbjct: 127 PCRLKDIHNIFLGSGLGPRSYAVIQQGNIGAIIDAGPHERRFFIEEAAG--VTRYNSRKN 184

Query: 161 D-FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-----GVKINIARVEMINALSSLIME 214
           +   ++      LL      +   S I  QMA L       +I     + I  L + I  
Sbjct: 185 EALRKVEATNQNLLRV----TDIISEINRQMAVLKRQARKAEIFKNLQDRIKKLDTDITI 240

Query: 215 YVQKEN 220
           Y   E 
Sbjct: 241 YYFDEY 246


>gi|33338074|gb|AAQ13659.1|AF176781_1 MSTP142 [Homo sapiens]
          Length = 205

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTR---IGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
           +     +G P+    F   V   EG  D +         S    +IN+ V++
Sbjct: 64  LIHGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSE--YKINNKVVQ 113


>gi|316978493|gb|EFV61475.1| putative RecF/RecN/SMC N domain protein [Trichinella spiralis]
          Length = 1819

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYAD 63
          ++ + +  F++Y    R+    + T  +G NG GK+N+++AI F+        R    +D
Sbjct: 4  LREIELENFKSYKGYQRIGPFKKFTAIIGPNGSGKSNLMDAICFVLGEKTSSLRVRKISD 63

Query: 64 VT 65
          + 
Sbjct: 64 LI 65


>gi|242059587|ref|XP_002458939.1| hypothetical protein SORBIDRAFT_03g043060 [Sorghum bicolor]
 gi|241930914|gb|EES04059.1| hypothetical protein SORBIDRAFT_03g043060 [Sorghum bicolor]
          Length = 1175

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA   +V  FD       G NG GK+NIL++I F   ++  R  R A
Sbjct: 1   MHIKEVTLEGFKSYAGRTVVSGFDPLFNAITGLNGSGKSNILDSICFVLGITDLRQVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  SLQELVYKQGQAGVTKATVSIVFDNSDRSRSPLGYEDSPEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            + +          +   V +   +    
Sbjct: 120 HLAQPSRVQTLFHSVQLNVNNPHFLIMQG 148


>gi|225378327|ref|ZP_03755548.1| hypothetical protein ROSEINA2194_03988 [Roseburia inulinivorans DSM
           16841]
 gi|225209764|gb|EEG92118.1| hypothetical protein ROSEINA2194_03988 [Roseburia inulinivorans DSM
           16841]
          Length = 556

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 70/229 (30%), Gaps = 28/229 (12%)

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV--EMINALSSLIM 213
              +  +++        L      +     +  Q A         R+  +M+      + 
Sbjct: 318 FSAIRQYKK--NQNRAKLQTASMQAEQLRKLREQEAMEAQMQQKKRLADQMLTEWKDSLW 375

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQ-------------SFCALKEEYAKKLFDGRKMDSM 260
           E   +      +++  G       Q                 + + + + + D    +  
Sbjct: 376 EKENRLFNLEEEITRQGVQSWAEHQRAEDIQALELAAQEITRISQSFYEDMQDELNAEIS 435

Query: 261 SRRTLIGPHRSD---------LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
              +L      D         L +    + +     S G  + + + + LA   +++   
Sbjct: 436 RYVSLFTAGAYDSVRLDEQGQLQILTEGREVRPELLSRGTLEQIYLALRLAVGNVVTKE- 494

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
                +LLDE  A  D+D+     + ++ + +QIF+    K   + L +
Sbjct: 495 -EPLPILLDEAFAMYDDDRLAQTLQTLSTLQNQIFLFTCQKREVEMLKK 542



 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKT---NILEAISFL---SPGRGFRR 58
           ++IK  +I +F    +  + F     +  G N  GK+   + L A+ F      GR    
Sbjct: 1   MQIKEADIFQFGKLQNKNISFKPGMNVIYGKNEAGKSTLHSFLCAMLFGMEKGRGRSSVT 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
            +Y+      +PSF++   +    +    +     +++       +++   + 
Sbjct: 61  DAYSQYEPWHAPSFYAGALKFTVGQQKFYLERNFYSKEKTDYLRNELDGEELS 113


>gi|171186263|ref|YP_001795182.1| SMC domain-containing protein [Thermoproteus neutrophilus V24Sta]
 gi|170935475|gb|ACB40736.1| SMC domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 702

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 79/253 (31%), Gaps = 28/253 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RR-ASYAD 63
           I+ + +  F+ +A              G NG GKT+++EA++    G  +  R    +AD
Sbjct: 2   IRRIELYNFKAHAKAVFKLGEGVNFIYGPNGSGKTSLMEAVAVALFGSQWVRRTGGRWAD 61

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE-------- 115
             R G+ +             +  +    E     S   L I+   +   D         
Sbjct: 62  YLRRGAAAGEVKLHLSHMGREVVVVRRFGEGGSSHSGTYLSIDGSTVARGDADVTAAVAT 121

Query: 116 -----LNKHLRISWLVPSMDRIFSGLSM-----ERRRFLDRMVFAIDPRHRRRMIDFERL 165
                + +   + ++     R+            R    D++   +   +       ER+
Sbjct: 122 KLGIGVEEFRHLLYIRQGELRLILEEPEYIDRVLRLDEFDKVDELVREAYNELKAKRERV 181

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE-----MINALSSLIMEYVQKEN 220
                 L        S   ++  +++E    +  AR+E      + A    +    +  +
Sbjct: 182 GGRAEELERRAPQLRSRIEALSRRLSEAEEAL--ARLEADEARFVEAERRYLALRERYIS 239

Query: 221 FPHIKLSLTGFLD 233
               + SL   L+
Sbjct: 240 LSKERESLEKALE 252



 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 15/188 (7%)

Query: 155 HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
           +       E  +R ++  L               ++A +  ++  AR E    L   +  
Sbjct: 503 YAVLRARHEEYLRAKSLALELRR----QLEEARGELAAVEAELAKARTEA-EKLERGLGA 557

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-HRSDL 273
                   +I+  L             A+ EE        R  +S     L     R  L
Sbjct: 558 AR------NIRSVLGELKPLARQILTKAINEELNAVFLKLRHKESFKSAHLAEVDGRYVL 611

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            V      I     S GEQ ++ + + +A AR +    G AP ++ DE + HLDE+ R  
Sbjct: 612 KVSTPSGPIDHRLLSLGEQNLLALSLRVALARAL---LGGAPFMMFDEPTEHLDEEHRRK 668

Query: 334 LFRIVTDI 341
           +  +V D+
Sbjct: 669 IVELVRDL 676


>gi|148988508|ref|ZP_01819955.1| hypothetical protein CGSSp6BS73_06760 [Streptococcus pneumoniae
          SP6-BS73]
 gi|147926189|gb|EDK77263.1| hypothetical protein CGSSp6BS73_06760 [Streptococcus pneumoniae
          SP6-BS73]
          Length = 585

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 13/94 (13%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++ K L I  FRN++S+ +    +  +  G N  GKTN+L AI +L              
Sbjct: 1  MEFKKLVIENFRNFSSIEVALSNK-NVIFGMNDSGKTNLLFAIRYL----------LDRT 49

Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98
           R  +  F  +            I ++L+  D +
Sbjct: 50 IR--NKGFIKSDYHRHDTSRPIKIQLELDLSDRK 81


>gi|320586476|gb|EFW99146.1| structural maintenance of chromosome complex subunit [Grosmannia
           clavigera kw1407]
          Length = 1137

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 71/212 (33%), Gaps = 18/212 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RRA 59
            I  + +  F  Y            + +G NG GK++++ AI     G GF      R +
Sbjct: 94  AIVKVFVENFVTYERAEFDPGPSLNMVIGPNGTGKSSLVCAICL---GLGFHSNVLGRAS 150

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--IRVVDELN 117
           ++ D  + G           +  +   +  ++L    + + R   +N     +R +  + 
Sbjct: 151 AFGDFVKHGRSHAIVEIELQKRPKDRQNFVVRLRITREDNSRKFWLNGQETSLRKIQSVM 210

Query: 118 KHLRISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM-IDFERLMRGRNR 171
           + LRI        +P   R+     +     L + + A  P   +      +R+ + +  
Sbjct: 211 QDLRIQVDNLCQFLPQD-RVAEFAGLNSVDLLAKTLEAAAPTEMKEWQSTLKRIYQEQKE 269

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
                  D+     +E++       +   R  
Sbjct: 270 AQHRMKVDAEQLRVLESRHQAQQADVERYRER 301


>gi|304384743|ref|ZP_07367089.1| DNA repair protein RecN [Pediococcus acidilactici DSM 20284]
 gi|304328937|gb|EFL96157.1| DNA repair protein RecN [Pediococcus acidilactici DSM 20284]
          Length = 559

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 22/221 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           +  L+I +F     L   F    T+  G+ G GK+ I++A+  L+ GRG     R  +  
Sbjct: 2   LLELSIKDFAIIEKLDASFRQGMTVLTGETGAGKSIIIDAVGLLAGGRGSVDFVRTGADK 61

Query: 63  DVTR--IGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDEL 116
            V +         +T   +E  G+E   D+ I  E          ++N  ++    + ++
Sbjct: 62  AVLQGVFDIAEIANTKTVLEELGIEPTNDLVITREL-LKTGRSVCRVNGTIVNLNSLKKI 120

Query: 117 NKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            + L           +       R   +F    V     R++     + +L R  N+ L 
Sbjct: 121 GQTLIDIHGQNEHQELMDSDKHLRLLEQFDYAAVADTKQRYQAAFKAYTKLNRRLNQSLK 180

Query: 175 EGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             +  +     ++ Q+ E+           ++   R +++N
Sbjct: 181 NEHEWNQRVDMLQFQVDEIKAANLIEGEDEELEKRRDQLVN 221


>gi|303256775|ref|ZP_07342789.1| DNA repair protein RecN [Burkholderiales bacterium 1_1_47]
 gi|302860266|gb|EFL83343.1| DNA repair protein RecN [Burkholderiales bacterium 1_1_47]
          Length = 551

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 88/259 (33%), Gaps = 31/259 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI +F     L L F    T   G+ G GK+ +++A+  L   R        +V R
Sbjct: 2   LCSLNIRDFVIVDKLDLEFSDGFTALTGETGAGKSILIDALQLLFGARS-----DPEVIR 56

Query: 67  IGSP-----SFFSTFARVEGMEGLADI-----SIKLETRDDRSVRCL-QINDVVI--RVV 113
            G+      + F+   +++      ++      + L    D   R    IN        +
Sbjct: 57  SGAQKSDLTASFTINDKIKTWLEERELSGLNGELVLRRTLDIKGRSRSWINGTTCSLSQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
            EL+  L +     +   +    S      LD     + P+       + +  R   + L
Sbjct: 117 KELSHMLVVVHGQHAHQSLLRKGSQL--EMLD-AYSGLRPQVDAVRSAWTQ-WREAQKTL 172

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            E     ++  +   +M           +E +  LS +  E+  + N  H +LS    + 
Sbjct: 173 EEARERQAFNQAELERM--------KWFLEDMKELSPVKGEW-ARINEEHTRLSRYNDII 223

Query: 234 GKFDQSFCALKEEYAKKLF 252
               ++  AL E     L 
Sbjct: 224 DSCQKAREALTEADYSALE 242


>gi|227515675|ref|ZP_03945724.1| DNA repair protein RecN [Lactobacillus fermentum ATCC 14931]
 gi|227085978|gb|EEI21290.1| DNA repair protein RecN [Lactobacillus fermentum ATCC 14931]
          Length = 564

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 121/346 (34%), Gaps = 40/346 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L FD   T+  G+ G GK+ I++A+S L+ GRG       +  R
Sbjct: 2   LQELTIDNLAIIDHLSLEFDDHMTVLTGETGAGKSIIIDAVSLLAGGRG-----SQEFIR 56

Query: 67  IGSPSF-----FST------FARVEGM-EGLADISIKLETRDDRSVR-CLQINDVVIR-- 111
            G         F         A+++ +     D ++ +     RS R  +++N  ++   
Sbjct: 57  KGEEKLSLQGQFEIPKLPGYVAKLDELGISHDDGTLIISREIHRSGRNTIRVNGTLVNAA 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA----IDPRHRRRMIDFERLMR 167
            + +L   L           +           LD+   A    +   ++ +  ++ RL  
Sbjct: 117 TLKQLGSGLVDIQGQNEHQLLLR--PEAHLGMLDQFANAKVQPLLASYQEQYQEYRRLEA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
             N+        +     +  Q+ E+G     A  E       LI E  + E+F  I  +
Sbjct: 175 AVNQKKANEQQWAQRLDMLRYQVKEIGDADLRADEE-----DELIAERERLEHFQQIATT 229

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS-RRTLIGPHRSDLIVDYCDKAITIAH 286
           L   +    D     + ++ A  +   +++         +    SD      D A    H
Sbjct: 230 LQQVVGVLNDDEEAPVLDQVATIMNAAQEIAPFDPEYDDLAQSLSDAYYSLQDVANQAGH 289

Query: 287 ----GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
                   E+++  +   LA    + +  G +    L ++ A+ D+
Sbjct: 290 QLDSLEFDEERLATINARLATIADLEHKYGES----LADVLAYYDQ 331


>gi|187933092|ref|YP_001885440.1| chromosome segregation protein SMC [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721245|gb|ACD22466.1| chromosome segregation protein SMC [Clostridium botulinum B str.
           Eklund 17B]
          Length = 1185

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L+I  F+++A    L F+   T  VG NG GK+NI +A+ ++   +     R   
Sbjct: 1   MFLKSLDIRGFKSFADKTELKFNNGVTAVVGPNGSGKSNISDAVRWVLGEQSVKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +          T   R  R       IN+   R
Sbjct: 61  MEDVIFSGTQYRKPVGLAQVSLTLDNGDKKLSTEYSEVTVSRRIFRSGESEYLINNKKCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +N  +                ++ I SG   ERR  L+
Sbjct: 121 LKDVINLFMDTGIGKEGYSLIGQGKIESILSGRPEERRALLE 162


>gi|149240199|ref|XP_001525975.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146450098|gb|EDK44354.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1173

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K+  L I  F++YA+  +   +DA      G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVDELIIDGFKSYATRTVISGWDASFNAITGLNGSGKSNILDAICFVLGISSMQTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  + IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFNNSEISKSPIGFENCSTISVTRQIILGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    L+    +   + + + +    
Sbjct: 120 HKAQQQTVLSLFQSVQLNINNPNFLIMQG 148


>gi|330982947|gb|EGH81050.1| chromosome segregation protein SMC [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 171

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 28/167 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLD 145
              R  D +      + L P    I               + R F++
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIE 165


>gi|331000118|ref|ZP_08323812.1| DNA repair protein RecN [Parasutterella excrementihominis YIT
           11859]
 gi|329572893|gb|EGG54516.1| DNA repair protein RecN [Parasutterella excrementihominis YIT
           11859]
          Length = 551

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 88/259 (33%), Gaps = 31/259 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI +F     L L F    T   G+ G GK+ +++A+  L   R        +V R
Sbjct: 2   LCSLNIRDFVIVDKLDLEFSDGFTALTGETGAGKSILIDALQLLFGARS-----DPEVIR 56

Query: 67  IGSP-----SFFSTFARVEGMEGLADI-----SIKLETRDDRSVRCL-QINDVVI--RVV 113
            G+      + F+   +++      ++      + L    D   R    IN        +
Sbjct: 57  SGAQKSDLTASFTINDKIKTWLEERELSGLNGELVLRRTLDIKGRSRSWINGTTCSLSQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
            EL+  L +     +   +    S      LD     + P+       + +  R   + L
Sbjct: 117 KELSHMLVVVHGQHAHQSLLRKGSQL--EMLD-AYSGLRPQVDAVRSAWTQ-WREAQKTL 172

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            E     ++  +   +M           +E +  LS +  E+  + N  H +LS    + 
Sbjct: 173 EEARERQAFNQAELERM--------KWFLEDMKELSPVKGEW-ARINEEHTRLSRYNDII 223

Query: 234 GKFDQSFCALKEEYAKKLF 252
               ++  AL E     L 
Sbjct: 224 DSCQKAREALTEADYSALE 242


>gi|326803326|ref|YP_004321144.1| DNA repair protein RecN [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650342|gb|AEA00525.1| DNA repair protein RecN [Aerococcus urinae ACS-120-V-Col10a]
          Length = 570

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 72/207 (34%), Gaps = 27/207 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F     + + FD   T+  G+ G GK+ I++A+  L+ GRG       D  R
Sbjct: 2   LQNIVIENFAIIDQVTIDFDEGMTVLTGETGAGKSIIIDALGLLAGGRG-----SVDFIR 56

Query: 67  IGSPSF--------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--I 110
            G+ +                  F + +G+    D  +   T D +    +++N V   +
Sbjct: 57  YGTKALKLRGIFYLPDFSESGRDFLQDQGIPFDDDQLLITRTLDQKGRNTIKVNGVPLTV 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLM 166
            ++ EL  +L           +           LD+     +      + +   ++ +  
Sbjct: 117 ALLKELGDYLLEIHGQNEHQSLL--DPKNHLDLLDQYAGNRIAQEREAYDKDYQNYRQAK 174

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +            +     ++ Q+ E+
Sbjct: 175 KAVKDFALNEQEVAQRLDLLKFQLNEI 201


>gi|313892797|ref|ZP_07826378.1| chromosome segregation protein SMC [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442728|gb|EFR61139.1| chromosome segregation protein SMC [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 1184

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +  F+++A   +  F    T  +G NG GK+NI +A+ ++   S  R  R   
Sbjct: 1   MQLLRLELKGFKSFADKTVVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+      S        +  +   D+    + +  R  R+      IN    R
Sbjct: 61  AEDIIFSGTEKRKPMSAAEVTLVFDNSDQQLDLDMAEVAITRRIYRTGESEFLINKRSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141
           + D         L +          +D I +    ERR
Sbjct: 121 LKDIHLLLADTGLGRDSMAIIGQNRIDAILNSKPEERR 158


>gi|313897414|ref|ZP_07830957.1| chromosome segregation protein SMC [Clostridium sp. HGF2]
 gi|312957784|gb|EFR39409.1| chromosome segregation protein SMC [Clostridium sp. HGF2]
          Length = 976

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 56/317 (17%), Positives = 102/317 (32%), Gaps = 57/317 (17%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A   +  FD+     VG NG GK+NI +AI   L     +  R  +
Sbjct: 1   MFLKRIELQGFKSFADKSIITFDSDVIGIVGPNGCGKSNINDAIRWVLGEQSVKSLRGNN 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQ---------INDVVI 110
            +DV   GS +      A V  +   +   + +E  +    R L          IN    
Sbjct: 61  MSDVIFSGSTARKAVNMAEVTLVFDNSRHIMNVEFEEVEVTRRLHRTSGEGEYFINKAPC 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRM 159
           R + ++   +  + L      I S             +RR   +    V     R    +
Sbjct: 121 R-LKDIVNLVMDTGLGRDSLSIISQGNISAFADAKPEDRRALFEEAAGVAKYKKRKNESL 179

Query: 160 IDFER--------------LMRGRNRLLTEGYFDSSWCS---SIEAQMAELGVKINIARV 202
               R              L R  N L  +      +      +E     + V       
Sbjct: 180 SKLNRTQDNLSRLEDIIMELERQVNPLKRQAKKAEVYLEKKKQLEVIEVSVLVDEIEKLS 239

Query: 203 EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-------DQSFCALKEEYAKKLFDGR 255
           E I+ L     +   ++      + +    + +        D+    L+E+YAK   + R
Sbjct: 240 EQIDMLKKKAFDLDSQKAMHETTIQVEDVKNSELRNEMYQLDREVNKLQEQYAKLSEESR 299

Query: 256 -------KMDSMSRRTL 265
                  +MD   +  L
Sbjct: 300 MLETRKIEMDEKRKYAL 316


>gi|303389012|ref|XP_003072739.1| chromosome segregation ATPase [Encephalitozoon intestinalis ATCC
          50506]
 gi|303301881|gb|ADM11379.1| chromosome segregation ATPase [Encephalitozoon intestinalis ATCC
          50506]
          Length = 1159

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 5  IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF-RRASY 61
          + ++ + +  F++YA   +     + T  VG NG GK+NI++A++F L  G    R  + 
Sbjct: 1  MGLERVEVENFKSYAGFHIIGPFDRFTCIVGPNGSGKSNIMDAVTFCLGIGSKHLRANNI 60

Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99
            +   G  S  S    +EG         ++ +     
Sbjct: 61 RSLIN-GGSSHASVALHIEGSGERRVFKRRISSEGRSQ 97


>gi|296112502|ref|YP_003626440.1| condensin subunit Smc [Moraxella catarrhalis RH4]
 gi|295920196|gb|ADG60547.1| condensin subunit Smc [Moraxella catarrhalis RH4]
          Length = 1208

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 58/300 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K L ++ F+++A+     F    T  VG NG GK+N+++AI ++   +  +  R  +
Sbjct: 1   MRLKSLKLAGFKSFANPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60

Query: 61  YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105
            +DV   G       + A VE       +    I  +L    + S+R            I
Sbjct: 61  MSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQELSLRRQVTKEGKSDYFI 120

Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-- 155
           N   +R  D         L            + RI     M+ R F++        R+  
Sbjct: 121 NGQRVRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEGAG--VSRYQA 178

Query: 156 ---------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                           +R+ D +  ++ +++ L      +    ++  ++  L       
Sbjct: 179 RRAETEKKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQALNDELKTL------Q 232

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           + E+I  L      + QK     I+   +G +  K D     ++ E    L   R  ++ 
Sbjct: 233 KEELIRRLFEAWHHHEQK----KIEQGKSGEVLAKLDAKANQVRREL--DLLSARVAEAQ 286


>gi|228477669|ref|ZP_04062298.1| chromosome segregation protein SMC [Streptococcus salivarius SK126]
 gi|228250558|gb|EEK09769.1| chromosome segregation protein SMC [Streptococcus salivarius SK126]
          Length = 1177

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKSIEMQGFKSFADKTQVVFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+      ++      ++  +G       +I++E            I+   +R
Sbjct: 61  MPDVIFAGTEVRKALNYAEVAVTLDNSDGFIAGAGETIRVERHIYRNGDNDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    ERR   +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNAKPEERRAIFE 162


>gi|145350307|ref|XP_001419553.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579785|gb|ABO97846.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1209

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 2/105 (1%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYA 62
           + IK + +  F+ Y    +  FD      VG NG GK+N+  AI   LS   G  RA   
Sbjct: 1   MHIKQVIVEGFKTYREQTVVDFDDGLNCIVGANGSGKSNLFHAIRFVLSDVFGNLRAEER 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                         A VE +   AD  + +E  + R  R + +  
Sbjct: 61  QRLLHEGAGHAVMSAYVEIVFDNADGRLPVEREEVRLRRNIGLKK 105



 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 65/213 (30%), Gaps = 28/213 (13%)

Query: 157  RRMIDFERLM-RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM-- 213
              +    +L+ +  N+L   G+ +         Q  E   ++   R E+  A  S+    
Sbjct: 949  ESLKSLHKLLSKTNNQLSKLGHVNKKALDQY-QQFTEQREELEKRRSEINKAFDSITQLI 1007

Query: 214  ---EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD-SMSRRTLIGPH 269
               ++ + E        ++      F +     + E   +       D          P 
Sbjct: 1008 DHLDHKKDEAIERTFKQVSMNFKDVFHRLVPGGRGELVMQRKRAANRDPEEEGEPAANPT 1067

Query: 270  RSDLIVDYCDKAITIAHG----------STGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
                   Y    I ++ G          S G++ VV V +  A            P  L 
Sbjct: 1068 T--FSEKYSGVKIKVSFGQGETMQMKQLSGGQKTVVAVALIFA-----IQRCDPMPFYLF 1120

Query: 320  DEISAHLDEDKRNALFRIV---TDIGSQIFMTG 349
            DEI A LD   R A+  +V    +  +Q   T 
Sbjct: 1121 DEIDAALDPQYRTAVAHMVKGQANNKTQFIATT 1153


>gi|125573018|gb|EAZ14533.1| hypothetical protein OsJ_04455 [Oryza sativa Japonica Group]
          Length = 1120

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA   +V  FD       G NG GK+NIL++I F   ++  R  R A
Sbjct: 1   MHIKEICLEGFKSYAGRTVVSGFDPLFNAITGLNGSGKSNILDSICFVLGITDLRQVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  SLQELVYKQGQAGVTKATVSIVFDNSDRSRSPLGYEDSPEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            + +          +   V +   +    
Sbjct: 120 HLAQPSRVQTLFHSVQLNVNNPHFLIMQG 148


>gi|219112113|ref|XP_002177808.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217410693|gb|EEC50622.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1237

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 62/411 (15%), Positives = 139/411 (33%), Gaps = 75/411 (18%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           + +  L +  F++YA L  +      T  +G NG GK+N+++A+SF+   +    R    
Sbjct: 1   MPVTSLELENFKSYAGLQTIGPFRDFTSVIGPNGAGKSNLMDAVSFVLGVQSRDLRSTVL 60

Query: 62  ADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDD-RSVRCLQINDV 108
           AD+                +       A +   + +     +       R V    ++  
Sbjct: 61  ADLVFRPPTTIGTTVSTTSTTPALRASATLVYADAVTGAETRFGRTIGVRGVGEYHLDGK 120

Query: 109 VIRVVDE---------LNKHLRISWLVPSMDRIFSGLSME------------------RR 141
           V+   D          L K          ++ +      E                  R+
Sbjct: 121 VVSWTDYEAALADIGVLVKARNFLVFQGDVEALARKSPAELTALVEQIAGSAGLADDYRQ 180

Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
           R  D+     +      ++  ++ +R   +LL E   ++     +  + A++  ++ +  
Sbjct: 181 RHADKEQAQQNTVF---LLQQQKTLRAERKLLKEQKTEADRFHQLLTEKADVETELYLWI 237

Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +  ++                H + ++ G L  + D +  A ++ +A+ L   +K  S +
Sbjct: 238 LYHLDR-------------DRHERDAVLGELRDERD-AHRATEQTHAETLQQAKKQASAA 283

Query: 262 RR-TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
           RR T     R   +    D+       +T E K   +   LA                  
Sbjct: 284 RRETGQRQQRRVELAALADRLEPAVIQTTEEIKS--LANKLAQDE--KQVAKKQT----- 334

Query: 321 EISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371
           E   H   ++ +A+ + + D  +Q  +T  ++   D +   A  ++++  Q
Sbjct: 335 EADTH--RERIDAIAKEIADYRTQ--LTALERDY-DEIKANAAPVQLTPEQ 380


>gi|224004996|ref|XP_002296149.1| smc1 [Thalassiosira pseudonana CCMP1335]
 gi|209586181|gb|ACI64866.1| smc1 [Thalassiosira pseudonana CCMP1335]
          Length = 1241

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          + + +L +  F++YA + R+      T  +G NG GK+N+++AISF+   +    R +  
Sbjct: 5  MPVTYLELENFKSYAGTQRIGPFFNFTCVIGPNGSGKSNLMDAISFILGVQSRDLRSSQM 64

Query: 62 ADVT 65
           D+ 
Sbjct: 65 KDLI 68


>gi|166366712|ref|YP_001658985.1| ATPase [Microcystis aeruginosa NIES-843]
 gi|166089085|dbj|BAG03793.1| ATPase [Microcystis aeruginosa NIES-843]
          Length = 426

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 29/46 (63%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++IK + +  +R   SL + F  Q  +F+G NG GK+ IL++++ +
Sbjct: 1  MRIKSIKLDNYRGVVSLNIDFHRQLNVFIGVNGAGKSTILDSLAIM 46


>gi|66769073|ref|YP_243835.1| recombination protein N [Xanthomonas campestris pv. campestris str.
           8004]
 gi|66574405|gb|AAY49815.1| recombination protein N [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 554

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 95/278 (34%), Gaps = 38/278 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSPSF-----FSTFAR--------VEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+        F   A            ++  A   ++   R D   R   IN   +   
Sbjct: 57  HGADRAELSAEFQLPAEHPGLTWLADNELDDDAQCQLRRIIRADGGSRA-WINGRPVTSS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168
            + +L   L           + +  S      LD   R     +   R+    ++ L+  
Sbjct: 116 QLSDLAARLVEIHGQHEHQALMARNSQL--ALLDAYARNSAQREQV-RQASQRWQALLDE 172

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQKENFPHI 224
           R+ L  +G   S     +E Q+AEL       R ++    I AL +              
Sbjct: 173 RDALSAQGDV-SDRIGFLEHQLAEL------EREDLDPAAIAALDTNHRRQAHATALIGA 225

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
             S+   L+G    S   L ++    L    + +    
Sbjct: 226 CESVVQQLNGDEGPSALGLLQDSRHDLARVAEHEPRLG 263


>gi|332976664|gb|EGK13504.1| DNA repair protein RecN [Psychrobacter sp. 1501(2011)]
          Length = 587

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 69/221 (31%), Gaps = 41/221 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F       L F     +  G+ G GK+ +L+A+S    GR     +   + R
Sbjct: 2   LTSLTLQNFALINHHELSFYDGFNVITGETGAGKSLLLDALSLCIGGR-----ADTSMVR 56

Query: 67  IGSP-----------------------------SFFSTFARVEGMEGLADISIKLETRDD 97
            G                               +  S +      E   D+ I+ +   +
Sbjct: 57  HGKDNADIYAQFEFSVNNYSAGDAAKEQTDNTVAAVSQWFADHEREFEGDVLIRRQLSSN 116

Query: 98  RSVRCLQINDVVIRV--VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDP 153
              +   +N V + +  + EL   L       +   +          +LD    + ++  
Sbjct: 117 GRSKA-WLNGVPVSLTELKELGAMLVNIHSQHAQQALLK--PAFVVEWLDSIAGLQSLAN 173

Query: 154 RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
              +    +++L R    +  +    +     + +Q+A++ 
Sbjct: 174 DTEQAYKAYQKLKRQAAEIAAKEAHRNDRIQLLNSQLADIS 214


>gi|326568009|gb|EGE18101.1| condensin subunit Smc [Moraxella catarrhalis BC7]
          Length = 1202

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 58/300 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K L ++ F+++A+     F    T  VG NG GK+N+++AI ++   +  +  R  +
Sbjct: 1   MRLKSLKLAGFKSFANPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60

Query: 61  YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105
            +DV   G       + A VE       +    I  +L    + S+R            I
Sbjct: 61  MSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQELSLRRQVTKEGKSDYFI 120

Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-- 155
           N   +R  D         L            + RI     M+ R F++        R+  
Sbjct: 121 NGQRVRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEGAG--VSRYQA 178

Query: 156 ---------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                           +R+ D +  ++ +++ L      +    ++  ++  L       
Sbjct: 179 RRAETEKKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQALNDELKTL------Q 232

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           + E+I  L      + QK     I+   +G +  K D     ++ E    L   R  ++ 
Sbjct: 233 KEELIRRLFEAWHHHEQK----KIEQGKSGEVLAKLDAKANQVRREL--DLLSARVAEAQ 286


>gi|270290378|ref|ZP_06196603.1| DNA repair protein RecN [Pediococcus acidilactici 7_4]
 gi|270281159|gb|EFA26992.1| DNA repair protein RecN [Pediococcus acidilactici 7_4]
          Length = 559

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 22/221 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           +  L+I +F     L   F    T+  G+ G GK+ I++A+  L+ GRG     R  +  
Sbjct: 2   LLELSIKDFAIIEKLDASFRQGMTVLTGETGAGKSIIIDAVGLLAGGRGSVDFVRTGADK 61

Query: 63  DVTR--IGSPSFFSTFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDEL 116
            V +         +T   +E  G+E   D+ I  E          ++N  ++    + ++
Sbjct: 62  AVLQGVFDIAEIANTKTVLEELGIEPTNDLVITREL-LKTGRSVCRVNGTIVNLNSLKKI 120

Query: 117 NKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            + L           +       R   +F    V     R++     + +L R  N+ L 
Sbjct: 121 GQTLIDIHGQNEHQELMDSDKHLRLLEQFDYAAVADTKQRYQAAFKAYTKLNRRLNQSLK 180

Query: 175 EGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             +  +     ++ Q+ E+           ++   R +++N
Sbjct: 181 NEHEWNQRVDMLQFQVDEIKAANLIEGEDEELEKRRDQLVN 221


>gi|229823203|ref|ZP_04449272.1| hypothetical protein GCWU000282_00501 [Catonella morbi ATCC 51271]
 gi|229787369|gb|EEP23483.1| hypothetical protein GCWU000282_00501 [Catonella morbi ATCC 51271]
          Length = 580

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 90/262 (34%), Gaps = 26/262 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ LNI  F     + L  +   T+  G+ G GK+ I++A+S L   RG       D+ R
Sbjct: 2   LRSLNIENFAIIDHVTLDLEMGMTVLAGETGAGKSIIIDALSLLMGSRG-----TNDLIR 56

Query: 67  IGSPSFFSTFARVEG------MEGLADISIKLETRDDRSVRC---------LQINDV--V 109
            G+                  +  LAD  ++LE ++D  +R          +++N     
Sbjct: 57  QGADKLVVEGLFSMSPAPAPLLAQLADFGLELEDQEDLIIRRELNRQGKNTVRVNGQLAN 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           + ++ ++  +L           + +      +  +F    +  +   ++     +++L +
Sbjct: 117 VSLLKQIGYYLVDIHGQNEHQALLNKQFHLSQLDQFAGDRLNQLKQTYQIAFERYDQLRK 176

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                  EG       S +E Q+ EL     +A    +  L          +       +
Sbjct: 177 DWLASQQEGTDKRQRLSFLEFQLQELEAANLVAGE--MAQLEQESRRLQNSQKIGQALAT 234

Query: 228 LTGFLDGKFDQSFCALKEEYAK 249
           +   L      +   L +  A 
Sbjct: 235 VNYLLSEADTSALTQLSQAQAA 256


>gi|22536888|ref|NP_687739.1| chromosome segregation SMC protein [Streptococcus agalactiae
           2603V/R]
 gi|25010801|ref|NP_735196.1| hypothetical protein gbs0746 [Streptococcus agalactiae NEM316]
 gi|76787222|ref|YP_329472.1| chromosome segregation protein SMC [Streptococcus agalactiae A909]
 gi|22533738|gb|AAM99611.1|AE014224_14 chromosome segregation SMC protein [Streptococcus agalactiae
           2603V/R]
 gi|23095155|emb|CAD46390.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562279|gb|ABA44863.1| chromosome segregation protein SMC [Streptococcus agalactiae A909]
          Length = 1179

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEMQGFKSFADKTKVEFDQGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+      ++      ++  +   +     +++E R          I+   +R
Sbjct: 61  MPDVIFAGTENRKPLNYAQVSVTLDNSDHFIENIADEVRVERRIFRNGDSEYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    ERR   +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAIFE 162


>gi|326941955|gb|AEA17851.1| dihydrolipoamide dehydrogenase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 176

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 41/186 (22%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 2   LSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G+       A +EG+           E   ++ I++E                  ++N 
Sbjct: 57  YGTEK-----AEIEGLFYVEDDKHPCIEKAEELDIEIEDGMIILKRDIAANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRM 159
            ++   ++ E+ K L           + +    ER  F+      DR+V  +D  ++   
Sbjct: 112 KLVTLSILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVKQLD-IYQNVY 167

Query: 160 IDFERL 165
            D+E+L
Sbjct: 168 ADYEKL 173


>gi|326570688|gb|EGE20722.1| condensin subunit Smc [Moraxella catarrhalis BC1]
          Length = 1202

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 58/300 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K L ++ F+++A+     F    T  VG NG GK+N+++AI ++   +  +  R  +
Sbjct: 1   MRLKSLKLAGFKSFANPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60

Query: 61  YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105
            +DV   G       + A VE       +    I  +L    + S+R            I
Sbjct: 61  MSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQELSLRRQVTKEGKSDYFI 120

Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-- 155
           N   +R  D         L            + RI     M+ R F++        R+  
Sbjct: 121 NGQRVRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEGAG--VSRYQA 178

Query: 156 ---------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                           +R+ D +  ++ +++ L      +    ++  ++  L       
Sbjct: 179 RRAETEKKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQALNDELKTL------Q 232

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           + E+I  L      + QK     I+   +G +  K D     ++ E    L   R  ++ 
Sbjct: 233 KEELIRRLFEAWHHHEQK----KIEQGKSGEVLAKLDAKANQVRREL--DLLSARVAEAQ 286


>gi|220909312|ref|YP_002484623.1| hypothetical protein Cyan7425_3946 [Cyanothece sp. PCC 7425]
 gi|219865923|gb|ACL46262.1| conserved hypothetical protein [Cyanothece sp. PCC 7425]
          Length = 356

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 24/44 (54%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K L I  FR + S  L    Q  + VG N  GKT+ILEAI  +
Sbjct: 2  LKNLKIENFRCFKSFELKELGQLNLLVGKNNSGKTSILEAIQLI 45


>gi|307150934|ref|YP_003886318.1| ATP-dependent endonuclease of the OLD family-like protein
          [Cyanothece sp. PCC 7822]
 gi|306981162|gb|ADN13043.1| ATP-dependent endonuclease of the OLD family-like protein
          [Cyanothece sp. PCC 7822]
          Length = 576

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI  L I  +RN   + L+F       +G+N +GK+N+L+ ++ L
Sbjct: 1  MKIINLKIQNYRNLDGVELIFHPDINFIIGENNLGKSNLLKLLNIL 46


>gi|15240835|ref|NP_196383.1| structural maintenance of chromosomes (SMC) family protein
           [Arabidopsis thaliana]
 gi|9759587|dbj|BAB11444.1| SMC-like protein [Arabidopsis thaliana]
 gi|332003807|gb|AED91190.1| structural maintenance of chromosomes 6A [Arabidopsis thaliana]
          Length = 1058

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 83/271 (30%), Gaps = 35/271 (12%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62
           KI  + +  F  +++L + F        G NG GK+ IL A+      R     R A+  
Sbjct: 22  KILRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAATLK 81

Query: 63  DVTRIGSPSFFSTFARVEGM----------------EGLADISIKLETRDDRSVRCLQIN 106
           D  + G  S+   +  ++                  E     S  L    D   R +   
Sbjct: 82  DFIKTGC-SYALVYVELKNQGEDAFKPEIYGDTLIIERRISDSTSLTVLKDHQGRKISSR 140

Query: 107 DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
              +R   EL +H  I    P           + R FL         +   +      L+
Sbjct: 141 KEELR---ELVEHYNIDVENPC----VIMSQDKSREFLHSGNDKDKFKFFYKAT----LL 189

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           +  + +L       +  +++  +M +    I       IN L   I      E      L
Sbjct: 190 QQVDDILQSIGTKLNSANALLDEMEKTIKPIEKE----INELLEKIKNMEHVEEITQQVL 245

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            L   L   +        +E  +K+   ++ 
Sbjct: 246 HLKKKLAWSWVYDVDRQLKEQNEKIVKFKER 276


>gi|218246306|ref|YP_002371677.1| chromosome segregation protein SMC [Cyanothece sp. PCC 8801]
 gi|218166784|gb|ACK65521.1| chromosome segregation protein SMC [Cyanothece sp. PCC 8801]
          Length = 1226

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 11/97 (11%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + IK + +S F+++  +  + F    T+  G NG GK+NIL+A+ F   L+  +G R   
Sbjct: 2  VHIKRIELSHFKSFGGTTSIPFLTGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61

Query: 61 YADVTRIG-------SPSFFSTFARVEGMEGLADISI 90
            D+             +  S    V  +E L + S+
Sbjct: 62 LPDLVNHNHSNNRKTQEASVSVTFDVSDLEDLQEFSL 98


>gi|153868967|ref|ZP_01998681.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152074461|gb|EDN71313.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 159

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
             IK++ + +  FR +  L L F +  T+ +G+NG GKT IL+ ++ L
Sbjct: 10 QPEIKVRKIILENFRGFEQLELEFQSDLTVLIGENGAGKTTILDGLAKL 58


>gi|21230926|ref|NP_636843.1| recombination protein N [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|21112540|gb|AAM40767.1| recombination protein N [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
          Length = 554

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 95/278 (34%), Gaps = 38/278 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSPSF-----FSTFAR--------VEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+        F   A            ++  A   ++   R D   R   IN   +   
Sbjct: 57  HGADRAELSAEFQLPAEHPGLTWLADNELDDDAQCQLRRIIRADGGSRA-WINGRPVTSS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168
            + +L   L           + +  S      LD   R     +   R+    ++ L+  
Sbjct: 116 QLSDLAARLVEIHGQHEHQALMARNSQL--ALLDAYARNSAQREQV-RQASQRWQALLDE 172

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQKENFPHI 224
           R+ L  +G   S     +E Q+AEL       R ++    I AL +              
Sbjct: 173 RDALSAQGDV-SDRIGFLEHQLAEL------EREDLDPAAIAALDTNHRRQAHATALIGA 225

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
             S+   L+G    S   L ++    L    + +    
Sbjct: 226 CESVVQQLNGDEGPSALGLLQDSRHDLARVAEHEPRLG 263


>gi|326573074|gb|EGE23047.1| condensin subunit Smc [Moraxella catarrhalis CO72]
          Length = 1208

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 58/300 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K L ++ F+++A+     F    T  VG NG GK+N+++AI ++   +  +  R  +
Sbjct: 1   MRLKSLKLAGFKSFANPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60

Query: 61  YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105
            +DV   G       + A VE       +    I  +L    + S+R            I
Sbjct: 61  MSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQELSLRRQVTKEGKSDYFI 120

Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-- 155
           N   +R  D         L            + RI     M+ R F++        R+  
Sbjct: 121 NGQRVRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEGAG--VSRYQA 178

Query: 156 ---------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                           +R+ D +  ++ +++ L      +    ++  ++  L       
Sbjct: 179 RRAETEKKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQALNDELKTL------Q 232

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           + E+I  L      + QK     I+   +G +  K D     ++ E    L   R  ++ 
Sbjct: 233 KEELIRRLFEAWHHHEQK----KIEQGKSGEVLAKLDAKANQVRREL--DLLSARVAEAQ 286


>gi|301066652|ref|YP_003788675.1| chromosome segregation ATPase [Lactobacillus casei str. Zhang]
 gi|300439059|gb|ADK18825.1| Chromosome segregation ATPase [Lactobacillus casei str. Zhang]
          Length = 1184

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +++K L I+ F+++A    + F +  T  VG NG GK+NI EAI +       +  R   
Sbjct: 1  MQLKRLIINGFKSFADKTEIDFVSGLTGIVGPNGSGKSNITEAIRWALGEQSAKSLRGER 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MGDVIFAGTD 70


>gi|257094259|ref|YP_003167900.1| ATPase-like protein [Candidatus Accumulibacter phosphatis clade
          IIA str. UW-1]
 gi|257046783|gb|ACV35971.1| ATPase-like protein [Candidatus Accumulibacter phosphatis clade
          IIA str. UW-1]
          Length = 397

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 19/103 (18%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI------------SFLSP 52
          + IK + I  F++  +  +V     T+ +G+NG GK+++LEA+            + +  
Sbjct: 1  MHIKSIAIENFKSLKNSGVVRMKPLTVLIGNNGSGKSSLLEAVETYRQVVLEGVDAAMEH 60

Query: 53 GRGFRRASYADVTRI-GSPSFFSTFARVEGMEGLADISIKLET 94
           +GF      +  R  G+ S  +T ARV+       +S KL+ 
Sbjct: 61 WQGF------EHIRHKGAVSRLTTAARVDPTRQHGAMSFKLKL 97


>gi|56698060|ref|YP_168431.1| SMC protein [Ruegeria pomeroyi DSS-3]
 gi|56679797|gb|AAV96463.1| SMC protein [Ruegeria pomeroyi DSS-3]
          Length = 1151

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 118/341 (34%), Gaps = 41/341 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+ ++      +  R   
Sbjct: 1   MRFNRLKLTGFKSFVDPTDLIIADGLTGIVGPNGCGKSNLLEALRWVMGENRPKAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+ S     F      ++  E LA         +++  R  R V    + N  
Sbjct: 61  MEDVIFAGASSRPARNFAEVTLLMDNSERLAPSGFNDADQLEIVRRITRDVGSAYKANGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR-----MVFAIDPRH 155
            +R  D   L          P++ R      + +     RRR L+       ++      
Sbjct: 121 DVRARDVQILFADASTGAHSPALVRQGQIAELINAKPTSRRRILEEAAGISGLYQRRHEA 180

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---GVKINIARVEMINALSSLI 212
             ++   E  +   + +L +     +  +    Q A     G ++ +A  +++       
Sbjct: 181 ELKLKGTETNLTRVDDVLEQLGTQLAQLARQARQAARYREIGEQLRLAEGQLLYRRWRDA 240

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
            E   K        +L         +   AL+ E    L   R+ ++++   L   H   
Sbjct: 241 DEARAKAEEVLRHRTLDASRAEAAARQAEALRNETEAALPALREEEAIAGAVLQRMHVQR 300

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA-RLISNTTG 312
             ++  ++           Q++ ++   +A   R I   TG
Sbjct: 301 DTLNDQEQRAR--------QQIEVLTARIAQLGRDIERETG 333


>gi|256847359|ref|ZP_05552805.1| chromosome segregation protein SMC [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716023|gb|EEU30998.1| chromosome segregation protein SMC [Lactobacillus coleohominis
           101-4-CHN]
          Length = 1189

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 23/163 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++  + I  F+++A    + F    T  +G NG GK+N++EA+ ++      +  R   
Sbjct: 1   MQLVSMEIDGFKSFAHKTTIKFQPGMTGIIGPNGSGKSNVIEALRWVMGEQSAKTLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   GS        A V+     +D  ++ +  +    R L         IND  +R
Sbjct: 61  MVDVIFNGSKDHHPLNRAVVKMTLDNSDHYLQSQYSEITVTRKLYRNGDSEYLINDHRVR 120

Query: 112 VVDELNKHLRISWLVPSMD---------RIFSGLSMERRRFLD 145
            + ++      S +               IF+G   +RRR ++
Sbjct: 121 -LKDIVDLFINSGIGRESFSIISQGRVAEIFNGQPSDRRRIIE 162


>gi|255725234|ref|XP_002547546.1| structural maintenance of chromosome 2 [Candida tropicalis
           MYA-3404]
 gi|240135437|gb|EER34991.1| structural maintenance of chromosome 2 [Candida tropicalis
           MYA-3404]
          Length = 1171

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D+Q     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVEELIIDGFKSYAARTVISGWDSQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E    IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFNNSEVSKSPIGFENCPTISVTRQIILGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    LN    +   + + + +    
Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148


>gi|255532740|ref|YP_003093112.1| SMC domain-containing protein [Pedobacter heparinus DSM 2366]
 gi|255345724|gb|ACU05050.1| SMC domain protein [Pedobacter heparinus DSM 2366]
          Length = 423

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +K + I  F++   L +    +  +F+G+NG GKT+ILEAI  
Sbjct: 2  LKSIKIKNFKSVQDLEIELG-RVNVFIGENGCGKTSILEAIGM 43


>gi|255282234|ref|ZP_05346789.1| putative RecF/RecN/SMC N domain protein [Bryantella formatexigens
           DSM 14469]
 gi|255267182|gb|EET60387.1| putative RecF/RecN/SMC N domain protein [Bryantella formatexigens
           DSM 14469]
          Length = 429

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 56/397 (14%), Positives = 117/397 (29%), Gaps = 58/397 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           +KI  L I   +   ++++       TI  G+NG GKT++L++I++   G  +R +    
Sbjct: 1   MKINQLEIENVKRIKAVKVEPALNGLTIIGGNNGQGKTSVLDSITWALGGDRYRPSRAQR 60

Query: 63  ------DVTRIGSPSFFSTF---------------------------------------- 76
                    RI   +                                             
Sbjct: 61  DGSVIHPYIRITMDNGLVVERKGKNSDLKVTDPSGKKAGQQLLNEFIEQLALDLPKFMNS 120

Query: 77  ---ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133
               + E +  L  +  ++E  + +          V R+ D+  K+ R     P   R  
Sbjct: 121 SGKEKAETLLRLIGVGDQVEALEKKETDLYSDRQAVGRIADQKKKYAREQVFYPDAPREP 180

Query: 134 SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
              S   RR   + + A +  ++R+    +++      L  +        + ++A+   +
Sbjct: 181 VSPSELIRR--QQEILARNGENQRKRNALQQMQAQSEELDRKIAGMEEQLADMKAERKRM 238

Query: 194 GVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
              I  AR      L       ++ +  N   I   +   LD    +      E    +L
Sbjct: 239 ASDIEDARKSA-EELQDESTAELEADLANIEEINRKVRANLDKDKAEEDARYYERQYNEL 297

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
                     +  L+      L     +    + +G   +       + ++ A  I    
Sbjct: 298 TGQITEVRERKNALLDQAELPLPGLSVNDRELVYNGQRWDNMSGADQLKVSTA--IVRKL 355

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
                 +L +    +D          +T  G Q+  T
Sbjct: 356 NPKCGFVLMDKLEQMDPSTLEEFGEWLTKEGLQVIAT 392


>gi|116495088|ref|YP_806822.1| chromosome segregation ATPase [Lactobacillus casei ATCC 334]
 gi|191638592|ref|YP_001987758.1| Chromosome seggregation Smc protein [Lactobacillus casei BL23]
 gi|227534897|ref|ZP_03964946.1| SMC structural maintenance of chromosomes partitioning protein
          [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|116105238|gb|ABJ70380.1| condensin subunit Smc [Lactobacillus casei ATCC 334]
 gi|190712894|emb|CAQ66900.1| Chromosome seggregation Smc protein [Lactobacillus casei BL23]
 gi|227187653|gb|EEI67720.1| SMC structural maintenance of chromosomes partitioning protein
          [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|327382634|gb|AEA54110.1| chromosome segregation protein SMC [Lactobacillus casei LC2W]
 gi|327385828|gb|AEA57302.1| chromosome segregation protein SMC [Lactobacillus casei BD-II]
          Length = 1184

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +++K L I+ F+++A    + F +  T  VG NG GK+NI EAI +       +  R   
Sbjct: 1  MQLKRLIINGFKSFADKTEIDFVSGLTGIVGPNGSGKSNITEAIRWALGEQSAKSLRGER 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MGDVIFAGTD 70


>gi|327461657|gb|EGF07988.1| DNA repair protein RecN [Streptococcus sanguinis SK1]
          Length = 552

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQLVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF----AIDPRHRRRMIDFERLMRGR 169
                   +  +    D+     S      LD         +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRSQLHIAMLDEFGSADFLHLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|327310411|ref|YP_004337308.1| SMC domain-containing protein [Thermoproteus uzoniensis 768-20]
 gi|326946890|gb|AEA11996.1| SMC domain protein [Thermoproteus uzoniensis 768-20]
          Length = 799

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 96/270 (35%), Gaps = 49/270 (18%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRAS 60
           +I  + + +F+ Y            T  VG  G GK+++L+A+ F   G+      R A 
Sbjct: 3   RIARIKLRDFKVYEGEYEFKLSP-VTAIVGRVGAGKSSLLQAVEFALFGKELEVRQRIAR 61

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVI------RVV 113
            AD+  + S S       +E  +G     ++    R  RS   L+++D         R +
Sbjct: 62  LADLINLNSDSAL---VELELTDGSRKALVRRSVGRGGRSRLELRLDDHKYTDEDAERTL 118

Query: 114 DELNK-----HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
            EL       + R+ ++       F      +R  L   +  ID      + + ++++  
Sbjct: 119 AELTGITSDDYDRVIYVSHYALEDFIHGDRLKRTSLIDKILQID-----ILDNTQKII-- 171

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE--MINALSSLIMEYVQKENFPHIKL 226
            N +L                   +  +I   R++         +I +Y        +K 
Sbjct: 172 -NNILKN-----------------IMEEIEKIRIKISYYEKYRDIIEKYGGLSKLKEVKA 213

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           SL   L+G   +    L   Y + L + R+
Sbjct: 214 SLERELEG-LTRREADLSSRYRELLEERRR 242



 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 81/245 (33%), Gaps = 38/245 (15%)

Query: 157 RRMIDFERLMRGRNRLL---------TEGYFDSSWCSSIEAQMAELGVKINIARVEM--- 204
             +  + + +R R                    +   + E +   +  +++  R      
Sbjct: 537 EVVRRYNKALRVRQLREELEGLERELKNLGLSGAALEA-EEEFRRISDELDRTRRRKADI 595

Query: 205 ---INALSSLIMEYVQKENFPHIKLS---LTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
              +  LS ++    ++ +    KL     +             LK     ++    + +
Sbjct: 596 YDELRRLSEVLANVDEELDSLKSKLEKYMYSYNRFSNIINKIDILKYNVRSRIIKEIEDE 655

Query: 259 SMSRRTLIGPHRS--DLIVDYCDKA------------ITIAHGSTGEQKVVLVGIFLAHA 304
                + I P+R    L +   DK             + I+  S G++    + + ++  
Sbjct: 656 LWRNFSKIYPYRDIESLRLTLRDKGYEVEARLADGNVVGISKLSDGQRLAAALSLVISMR 715

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNETA 362
           RL+    G    LLLD+   ++D + R++L  ++  + S  QI +      +   +    
Sbjct: 716 RLLGPKLG---FLLLDDPLPYVDPNVRSSLAGLIASLSSEYQIVVATQTGDLPREIAANG 772

Query: 363 KFMRI 367
             +R+
Sbjct: 773 VDVRV 777


>gi|225871678|ref|YP_002753036.1| RecF/RecN/SMC N domain protein [Bacillus cereus 03BB102]
 gi|225785565|gb|ACO25783.1| RecF/RecN/SMC N domain protein [Bacillus cereus 03BB102]
          Length = 688

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  L +  FR +     + F     + VG N  GKT I++A+  L
Sbjct: 1  MYISRLTLKNFRTFKNETTVQFHEGTNVIVGHNNAGKTTIIKALELL 47


>gi|326561539|gb|EGE11882.1| condensin subunit Smc [Moraxella catarrhalis 7169]
 gi|326564821|gb|EGE15029.1| condensin subunit Smc [Moraxella catarrhalis 12P80B1]
 gi|326566503|gb|EGE16650.1| condensin subunit Smc [Moraxella catarrhalis 103P14B1]
 gi|326571244|gb|EGE21267.1| condensin subunit Smc [Moraxella catarrhalis BC8]
 gi|326577228|gb|EGE27121.1| condensin subunit Smc [Moraxella catarrhalis 101P30B1]
          Length = 1208

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 58/300 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K L ++ F+++A+     F    T  VG NG GK+N+++AI ++   +  +  R  +
Sbjct: 1   MRLKSLKLAGFKSFANPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60

Query: 61  YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105
            +DV   G       + A VE       +    I  +L    + S+R            I
Sbjct: 61  MSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQELSLRRQVTKEGKSDYFI 120

Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-- 155
           N   +R  D         L            + RI     M+ R F++        R+  
Sbjct: 121 NGQRVRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEGAG--VSRYQA 178

Query: 156 ---------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                           +R+ D +  ++ +++ L      +    ++  ++  L       
Sbjct: 179 RRAETEKKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQALNDELKTL------Q 232

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           + E+I  L      + QK     I+   +G +  K D     ++ E    L   R  ++ 
Sbjct: 233 KEELIRRLFEAWHHHEQK----KIEQGKSGEVLAKLDAKANQVRREL--DLLSARVAEAQ 286


>gi|315426347|dbj|BAJ47987.1| exonuclease SbcC [Candidatus Caldiarchaeum subterraneum]
          Length = 758

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 64/195 (32%), Gaps = 25/195 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  F ++    +      T+F+G NG GK+++++AI +   GR   R   A++  
Sbjct: 2   IRRVRLFNFLSHRDTEISLGDGLTVFIGRNGAGKSSVVDAIVYALYGR-HTRGQNANIVH 60

Query: 67  IGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            G                   +V           +   R+D  +       V  RV D +
Sbjct: 61  DGGGAQEGRVELDFELNRKLYKVMRRFDNKGNLKEASIREDGKLLATSERGVDRRVSDIV 120

Query: 117 NKHL---------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM- 166
           +  L          +      +D I      E +   D ++        +     + ++ 
Sbjct: 121 SGLLGMNYERMRSSVVIQQGEVDAILRADPKELKELFDDLLGL--SAFEQAYARMKEVLE 178

Query: 167 --RGRNRLLTEGYFD 179
               R RL+     D
Sbjct: 179 CFEERVRLMVRRSVD 193



 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 113/309 (36%), Gaps = 28/309 (9%)

Query: 78  RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
            V G  G+A +  +LE   +R+ +  ++   +   V EL     +  L   +  + S + 
Sbjct: 451 EVGGEPGVAALKARLEGLRERAAKLEKVKVPIELDVAELQGVAEV--LPADVAELLSRIR 508

Query: 138 MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +R  D             ++  ERL   +++L  E          +   M +   +I
Sbjct: 509 TGIKRLRDDGYS------AGDVVQLERLKLRKDKLSREIGSKEKELEKLREDMQKAEKEI 562

Query: 198 --------NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
                    + +      L   + E V     P + +SL  ++  +  +      + +  
Sbjct: 563 GELERVREVLRKAREFRDLMRKMRELVYHREGPVL-MSLRSWVYERVSERAGEYLDTFES 621

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            + D R  +  + R      R      Y  + ++    S GE+ V+ + + LA    +  
Sbjct: 622 PVSDIRIEEERTGRGSRVVFRC----FYQGREVSWERLSGGEKVVLALALRLAIGDALGA 677

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIG---SQIFMTGTDKSVFDSLNETAKFMR 366
                   +LDE + HLD +KR  L  ++T +G    Q+ +   D+ VF+     A+ +R
Sbjct: 678 Q--RLGFFVLDEPTVHLDAEKRRRLREVLTRLGRKMPQVIVITHDEEVFE--GAEARVLR 733

Query: 367 ISNHQALCI 375
               +   I
Sbjct: 734 FELGRGATI 742


>gi|78187531|ref|YP_375574.1| chromosome segregation protein SMC [Chlorobium luteolum DSM 273]
 gi|78167433|gb|ABB24531.1| Chromosome segregation protein SMC [Chlorobium luteolum DSM 273]
          Length = 1177

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/203 (20%), Positives = 70/203 (34%), Gaps = 30/203 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           + +  + I  F+++A  +R+ FD   T  VG NG GKTN+++AI   L   +    R A 
Sbjct: 1   MYLSKIEIFGFKSFAHRVRISFDKGLTAIVGPNGCGKTNVVDAIRWVLGEQKSSLLRSAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             ++   GS      SF      +E    +        T   R  R       +N V  R
Sbjct: 61  MENIIFNGSKNLKPLSFTEVSLTIENTRNVLPTEYTEVTITRRIYRNGESGFLLNQVPCR 120

Query: 112 VVDELNKHLRISWLVPSMD--------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D L+          +           I S  S ER +  +             +  ++
Sbjct: 121 LKDILDLFTDTGMGSDAYSVIELKMIEEIISNKSEERMKLFEE---------AAGITRYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSI 186
           +  +   R L     D S    +
Sbjct: 172 QRRKQTFRQLESASRDLSRVDDL 194


>gi|82593920|ref|XP_725208.1| chromosome-associated polypeptide [Plasmodium yoelii yoelii str.
          17XNL]
 gi|23480124|gb|EAA16773.1| chromosome-associated polypeptide, putative [Plasmodium yoelii
          yoelii]
          Length = 971

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK + +  FR Y +   + F       VG NG GK+NIL AI F+
Sbjct: 1  MYIKQIKLKGFRTYKNETVIEFTKGINCIVGFNGSGKSNILMAIEFI 47


>gi|319744743|gb|EFV97085.1| SMC structural maintenance of chromosomes partitioning protein
           [Streptococcus agalactiae ATCC 13813]
          Length = 1179

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEMQGFKSFADKTKVEFDQGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+      ++      ++  +   +     +++E R          I+   +R
Sbjct: 61  MPDVIFAGTENRKPLNYAQVSVTLDNSDHFIENIADEVRVERRIFRNGDSEYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    ERR   +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSKPEERRAIFE 162


>gi|313633348|gb|EFS00193.1| DNA repair protein RecN [Listeria seeligeri FSL N1-067]
 gi|313638041|gb|EFS03320.1| DNA repair protein RecN [Listeria seeligeri FSL S4-171]
          Length = 563

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG       D  R
Sbjct: 2   LQEMTIKNFAIIESLSLSFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----STDFIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G               +F    A +E      D  + LE    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFALAEDNFACRNALLEHGIDATDDMVVLERSLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    +     +++    +++ + + 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPALTKYQANFKEYQTISKE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197


>gi|302036230|ref|YP_003796552.1| putative chromosome segregation protein Smc [Candidatus
          Nitrospira defluvii]
 gi|300604294|emb|CBK40626.1| putative Chromosome segregation protein Smc [Candidatus
          Nitrospira defluvii]
          Length = 1227

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASY 61
          + +K L +  F+++A  ++ F    T  VG NG GK+N++++I   L     +  R    
Sbjct: 1  MYLKSLEMLGFKSFAEAKIQFPKGITAIVGPNGSGKSNVVDSILWVLGEQSTKTLRSEKM 60

Query: 62 ADVTRIGSP 70
           DV   G+ 
Sbjct: 61 EDVIFNGTE 69


>gi|49481911|gb|AAT66667.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A59]
          Length = 573

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 51/280 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + F+   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSISFEQGLTVLTGETGAGKSIIIDAIYLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G        A +EG+  L D           + ++  +                 ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLNDETHPCYGKCAEVGIDISEGMVVLRREIFATGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMID 161
            ++   V+ E+   L           +           LD      +      +R     
Sbjct: 112 KLVTTAVLREIGSTLVDIHGQHEHQELM--DPARHLPLLDEFGGAEIAEALAEYRSVYEK 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210
           +E+L +   +L       +     +  Q+ E+           ++   +V+++N   +  
Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYE 229

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247
            +    +  +     L   G      D        LKE Y
Sbjct: 230 ALKHSYEALSGEQRGLDWIGLAMSHLDDVASIDPELKEAY 269


>gi|49481907|gb|AAT66665.1| DNA repair and genetic recombination protein [Geobacillus
           caldoxylosilyticus]
          Length = 573

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 51/280 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + F+   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIYLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G        A +EG+  L D           + ++  +                 ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLNDETHPCYGKCAEVGIDISEGMVVXRREIFATGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMID 161
            ++   V+ E+   L           +           LD      +      +R     
Sbjct: 112 KLVTTAVLREIGSTLVDIHGQHEHQELM--DPARHLPLLDEFGGAEIAEALAEYRSVYEK 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210
           +E+L +   +L       +     +  Q+ E+           ++   +V+++N   +  
Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYE 229

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247
            +    +  +     L   G      D        LKE Y
Sbjct: 230 ALKHSYEALSGEQRGLDWIGLAMSHLDDVASIDPELKEVY 269


>gi|302872006|ref|YP_003840642.1| chromosome segregation protein SMC [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574865|gb|ADL42656.1| chromosome segregation protein SMC [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 1177

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 92/270 (34%), Gaps = 34/270 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + IK+L I  F+++    R+      T  VG NG GK+NI +AI +    +     R A 
Sbjct: 1   MYIKWLEIYGFKSFCEKTRIELQKGITAIVGPNGCGKSNITDAIRWALGEQSLKILRAAK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+       F       +   G+  I    + +  R  RS      IN    R
Sbjct: 61  QEDLIFAGTEKRKSQGFAEVSICFDNSNGILPIDYQEVVITRRLFRSGESEFFINKTPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I +   +ER R  +        ++R+   + E
Sbjct: 121 LKDVYELFLDSGLGKDGYSVISQGKVDEIINARPVERYRIFEEACGITKYKYRKE--ETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R ++                  ++  M EL  ++   + + +      +    + ++   
Sbjct: 179 RKLK----------TTEENIQRLQDVMFELSTQLEEIKPD-VQKAKIYLQINQKLQSLKK 227

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
            K      L G+        +++  ++L  
Sbjct: 228 EKYVYEYNLTGRRYNDLLFKEKQLNEELEK 257



 Score = 39.5 bits (91), Expect = 0.92,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 44/205 (21%)

Query: 170  NRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINALSSLIMEYVQKEN 220
            NR +              A ++ELG          K    R++ +      + +    + 
Sbjct: 955  NREIFWSKEKEDELERCTAALSELGEVKLYSIDQEKRLQERMQFLQKQIEDLQKTT--DE 1012

Query: 221  FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
               +   L   +   F ++F  +K  +++  F+           L G    DL +   D 
Sbjct: 1013 LKRLISHLEKNMKEIFLENFEKIKSLFSEIFFE-----------LFGGGSCDLKLIGQDG 1061

Query: 281  AI--------------TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
             +               I   S GE+ +V + +  A       T   + + +LDEI + L
Sbjct: 1062 ELGVDIDVKPPGKKLQNINLLSGGEKALVAIALLFAFL-----TFKGSLLCILDEIDSSL 1116

Query: 327  DEDKRNALFRIVTDIGSQ---IFMT 348
            DE       + + ++ SQ   I +T
Sbjct: 1117 DEANVQRFAQYIKNLNSQSQIIIVT 1141


>gi|296412047|ref|XP_002835739.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629529|emb|CAZ79896.1| unnamed protein product [Tuber melanosporum]
          Length = 1122

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 24/222 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +  L + F       +G NG GK+ IL AI+    G+     R  S   
Sbjct: 107 IQSVTCQNFMCHRWLEIKFGPFVNFVIGHNGSGKSAILTAITLCLGGKAAATNRGTSMKS 166

Query: 64  VTRIGSP-SFFSTFARVEG------MEGLADISIKLETRDDRSVRCLQIND-----VVIR 111
           + + G   S  +   + +G        G A +  +  TRD  S   L+ ND         
Sbjct: 167 LIKEGEDTSRITVKLKNQGDGFKTEQYGDAILIERNFTRDGSSGYKLKSNDGKAISSKKE 226

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            ++E+  +  +    P    I +  S   R+FL     A   +   + ++ E+ +     
Sbjct: 227 ELEEICDYFGLQVDNP--MTILTQDSA--RQFLSSSTNAEKYKFFAKGVNLEQ-LDQDYA 281

Query: 172 LLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSSL 211
           L+  G    S  + +  ++A++    K+ +   E ++ L S 
Sbjct: 282 LIKNGI--DSTDAVLHNKLADIDGLKKLMVRANERLDQLKSH 321


>gi|251793335|ref|YP_003008063.1| RecF/RecN/SMC N domain [Aggregatibacter aphrophilus NJ8700]
 gi|247534730|gb|ACS97976.1| RecF/RecN/SMC N domain, putative [Aggregatibacter aphrophilus
           NJ8700]
          Length = 409

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 26/147 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI +L IS F++  ++ +   +   +  G NG GK+N ++A++FLS            V
Sbjct: 1   MKINYLKISGFKSIQNVEIKDVSSFMVLAGANGTGKSNFVDALAFLSK-----------V 49

Query: 65  TRIGSPSFFSTFARVEGMEGLAD----ISIKLETRDDRSVRCLQI----NDVVIRVVDEL 116
             +G     S F  VE + G       IS K+E   +  V   +I    N+++ R+  E 
Sbjct: 50  IDMGVSKAVSEFGGVENLIGPKHNSGNISYKIEFEIEEQVYQYEISIFLNNLISRISSES 109

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRF 143
            K L+         +I       R + 
Sbjct: 110 LKILK-------DGQIIFDSDKVREKL 129


>gi|254410361|ref|ZP_05024140.1| DNA repair protein RecN [Microcoleus chthonoplastes PCC 7420]
 gi|196182567|gb|EDX77552.1| DNA repair protein RecN [Microcoleus chthonoplastes PCC 7420]
          Length = 589

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 38/216 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYADVT 65
           +  L I  F     L L F A   +  G+ G GK+ IL+AI     G+   R      + 
Sbjct: 2   LLSLRIQNFALIDQLELEFAAGLNVLTGETGAGKSIILDAIDVALGGKVTHR------LI 55

Query: 66  RIGSP-SFFSTFARVEGM------EGLADI--------SIKLETRDDRSVRCLQINDVVI 110
           R G   +      R++G       E   D+        S ++  + +      +IN +++
Sbjct: 56  RTGEKRALVEATFRIDGTLMAWLSEQEIDLLDEADLVCSREITAKQNSLRSRSRINGILV 115

Query: 111 --RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--------AIDPRHRRRMI 160
             R++++L    R+  +      +    S  +RR LD             +   +     
Sbjct: 116 NRRLMEQLRD--RLVEITAQGQTVQLFASTRQRRLLDFFGGFPIKQHLDQVTTAYLASQD 173

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
            ++ L + R                +E Q  EL   
Sbjct: 174 AWQALQKRRQ----SEQQRLQRLDWLEYQTQELSAA 205


>gi|196005895|ref|XP_002112814.1| hypothetical protein TRIADDRAFT_25837 [Trichoplax adhaerens]
 gi|190584855|gb|EDV24924.1| hypothetical protein TRIADDRAFT_25837 [Trichoplax adhaerens]
          Length = 320

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +  L I  F++Y     +    + T  +G NG GK+N+++AI F+   +    R  S  +
Sbjct: 4   LTQLEIENFKSYKGKQIIGPFKRFTAIIGPNGSGKSNLMDAICFVLGEKTSNLRVRSVKN 63

Query: 64  VTRIGSPSF--FSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           +   G+P     S  A+V  +    D   I+       S    +IN+ VI    +  + L
Sbjct: 64  LI-HGAPIHKPVSNKAQVTAVYTEEDETEIRFTRCIVGSGTEYRINNKVIDKTIQYQEKL 122

Query: 121 RISWLV 126
               + 
Sbjct: 123 ENLGIS 128


>gi|239631966|ref|ZP_04674997.1| chromosome segregation ATPase [Lactobacillus paracasei subsp.
          paracasei 8700:2]
 gi|239526431|gb|EEQ65432.1| chromosome segregation ATPase [Lactobacillus paracasei subsp.
          paracasei 8700:2]
          Length = 1184

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +++K L I+ F+++A    + F +  T  VG NG GK+NI EAI +       +  R   
Sbjct: 1  MQLKRLIINGFKSFADKTEIDFVSGLTGIVGPNGSGKSNITEAIRWALGEQSAKSLRGER 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MGDVIFAGTD 70


>gi|127139521|ref|NP_955836.2| structural maintenance of chromosomes 2 [Danio rerio]
 gi|220678594|emb|CAX14295.1| novel protein similar to fibroblast growth factor receptor 4
           (FGFR4, zgc:55326) [Danio rerio]
          Length = 1199

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 42/286 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++Y     +  FD       G NG GK+NIL++I FL   S     R  
Sbjct: 1   MYIKSIVLEGFKSYAERTEINGFDPFFNAITGLNGSGKSNILDSICFLLGISNLSQVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I+I  +       + L IN 
Sbjct: 61  NLQDLVYKNGLAGITKATVSITFDNSNKKQSPLGFETHDEITITRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V    +   +    +   V +   +     +   + L+     ++  I+     RM + +
Sbjct: 120 VNANNLRVQDLFCSVGLNVNNPHFLIMQGRIT--KVLNMKPPEILAMIEEAAGTRMYECK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           ++   +     +          ++ ++     K+   R   +           QK     
Sbjct: 178 KISAQKTIEKKDAKLKEIQT-ILDEEITPAMEKLKEERASYLE---------YQKLMREI 227

Query: 224 IKLS--LTGFLDGKFDQSFCALKEEYAK------KLFDGRKMDSMS 261
             LS     +L    +++     EE  +      KL +  K +   
Sbjct: 228 EHLSRLYVAYLFVCAEETKLKSNEELQEMQSSIAKLQENMKQNEAK 273


>gi|68469234|ref|XP_721404.1| potential nuclear DNA repair complex SMC ATPase [Candida albicans
           SC5314]
 gi|68470259|ref|XP_720891.1| potential nuclear DNA repair complex SMC ATPase [Candida albicans
           SC5314]
 gi|77022674|ref|XP_888781.1| hypothetical protein CaO19_6568 [Candida albicans SC5314]
 gi|46442783|gb|EAL02070.1| potential nuclear  DNA repair complex SMC ATPase [Candida albicans
           SC5314]
 gi|46443321|gb|EAL02604.1| potential nuclear  DNA repair complex SMC ATPase [Candida albicans
           SC5314]
 gi|76573594|dbj|BAE44678.1| hypothetical protein [Candida albicans]
          Length = 1128

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 4/104 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ L +  F  + S  L    Q    +G NG GK+ IL  IS     +     R ++  D
Sbjct: 106 IEKLTLKNFMCHDSFELKLGPQLNFIIGRNGSGKSAILTGISVGLGAKATDTNRGSTIRD 165

Query: 64  VTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
           + + G S S  +   + EG +         +   +R ++    N
Sbjct: 166 LIKDGKSTSRITVVLKNEGSDAYKPDVFGKKIIIERKLQRSGSN 209


>gi|307276680|ref|ZP_07557798.1| segregation protein SMC [Enterococcus faecalis TX2134]
 gi|306506790|gb|EFM75942.1| segregation protein SMC [Enterococcus faecalis TX2134]
          Length = 1192

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNNDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|257126140|ref|YP_003164254.1| SMC domain protein [Leptotrichia buccalis C-1013-b]
 gi|257050079|gb|ACV39263.1| SMC domain protein [Leptotrichia buccalis C-1013-b]
          Length = 1209

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           + +K L ++ F+++A+  +  FD   T  VG NG GK+NIL+AI ++   + +   R   
Sbjct: 1   MYLKALELTGFKSFANRTVVEFDNGITSIVGPNGSGKSNILDAILWVLGEQSYKNIRAKE 60

Query: 61  YADVTRIGS-----PSFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
            +D+   G       S       ++  +   D+    +K+  R          IN+   R
Sbjct: 61  SSDIIFSGGKNKKPKSMAEVSLIIDNEDRYLDVDFSEVKITRRIFKTGENEYLINNKKSR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|218189557|gb|EEC71984.1| hypothetical protein OsI_04829 [Oryza sativa Indica Group]
          Length = 1171

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA   +V  FD       G NG GK+NIL++I F   ++  R  R A
Sbjct: 1   MHIKEICLEGFKSYAGRTVVSGFDPLFNAITGLNGSGKSNILDSICFVLGITDLRQVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  SLQELVYKQGQAGVTKATVSIVFDNSDRSRSPLGYEDSPEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            + +          +   V +   +    
Sbjct: 120 HLAQPSRVQTLFHSVQLNVNNPHFLIMQG 148


>gi|254423499|ref|ZP_05037217.1| DNA repair protein RecN [Synechococcus sp. PCC 7335]
 gi|196190988|gb|EDX85952.1| DNA repair protein RecN [Synechococcus sp. PCC 7335]
          Length = 637

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 92/265 (34%), Gaps = 41/265 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +  L I  F     L L       +  G+ G GK+ IL+AI  +    + GR  R  +  
Sbjct: 2   LVSLKIENFALIDQLELELKPGLNVLTGETGAGKSIILDAIDAVLGGKASGRWVRTGTEK 61

Query: 63  DVTRIGSPSFFSTFARVEG-------MEGLADISIKLE-TRDDRSVR-CLQINDVVIRV- 112
            +      + F    R+ G        +G A I+ + + T    SVR   ++N + ++  
Sbjct: 62  ALV----EATFQVDTRLSGWLSEQAIPDGGAIITCRRDLTAGKNSVRSKSRLNGIPVKKP 117

Query: 113 -VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            +D L + L    +      +  G    +R +LD                  +L+  + +
Sbjct: 118 QMDALRQLL--IEITAQGQTLQLGDHDLQRDWLDGFGDQ-------------KLLEQKGQ 162

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           +       SS    ++A+      + +  R E I  L     E+ +       +L     
Sbjct: 163 VAANYAAASSAKKILDAR-----RQADRQRAEQIEMLQFQNKEFSEAALEDPNELEDLQI 217

Query: 232 LDGKFDQSFCALKEEYA--KKLFDG 254
              +   S    ++ Y   + L++ 
Sbjct: 218 EHQRLSHSVELQQQSYQVYQMLYEN 242


>gi|115441687|ref|NP_001045123.1| Os01g0904400 [Oryza sativa Japonica Group]
 gi|56784538|dbj|BAD82795.1| SMC2 protein [Oryza sativa Japonica Group]
 gi|113534654|dbj|BAF07037.1| Os01g0904400 [Oryza sativa Japonica Group]
          Length = 1175

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA   +V  FD       G NG GK+NIL++I F   ++  R  R A
Sbjct: 1   MHIKEICLEGFKSYAGRTVVSGFDPLFNAITGLNGSGKSNILDSICFVLGITDLRQVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  SLQELVYKQGQAGVTKATVSIVFDNSDRSRSPLGYEDSPEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            + +          +   V +   +    
Sbjct: 120 HLAQPSRVQTLFHSVQLNVNNPHFLIMQG 148


>gi|47095887|ref|ZP_00233491.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
          F6854]
 gi|254900455|ref|ZP_05260379.1| RecF/RecN/SMC N domain protein [Listeria monocytogenes J0161]
 gi|254913307|ref|ZP_05263319.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937688|ref|ZP_05269385.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|47015764|gb|EAL06693.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
          F6854]
 gi|258610288|gb|EEW22896.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293591308|gb|EFF99642.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 690

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 27/51 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + I  + I+ +R++ +  +  +    + +G N  GK+N+L+A++ +     
Sbjct: 1  MYISKVKINNYRSFINTEIDLNEGINVLIGHNNAGKSNLLKALAIVLGSTS 51


>gi|332362903|gb|EGJ40696.1| DNA repair protein RecN [Streptococcus sanguinis SK49]
          Length = 552

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA----IDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD    A    +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGSADFLYLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|307282353|ref|ZP_07562561.1| RecF/RecN/SMC protein [Enterococcus faecalis TX0860]
 gi|306503801|gb|EFM73027.1| RecF/RecN/SMC protein [Enterococcus faecalis TX0860]
          Length = 788

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 11/137 (8%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           N+++I  + +  F++     + F+     +  G NG GKT I +AI  +  G+  R  + 
Sbjct: 5   NKLRINKIYLKNFKHVNEAEINFNNNDLIVLDGPNGFGKTTIFDAIELVMTGKISRITNT 64

Query: 62  ADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            D  R+G   + FS  + ++      ++ I+ E  ++R V   +I+        +     
Sbjct: 65  IDR-RLGYEYNLFSNKSEID-----TEVRIEFENNENRIVIAKRIDSERRFTQSDKKPDN 118

Query: 121 RISW---LVPSMDRIFS 134
              +   L+P    IF 
Sbjct: 119 WNVFQTYLLPEFMSIFE 135


>gi|256958377|ref|ZP_05562548.1| chromosome partition protein SMC [Enterococcus faecalis DS5]
 gi|257078312|ref|ZP_05572673.1| chromosome partition protein SMC [Enterococcus faecalis JH1]
 gi|257080501|ref|ZP_05574862.1| chromosome partition protein SMC [Enterococcus faecalis E1Sol]
 gi|294780224|ref|ZP_06745596.1| chromosome segregation protein SMC [Enterococcus faecalis PC1.1]
 gi|307270585|ref|ZP_07551883.1| segregation protein SMC [Enterococcus faecalis TX4248]
 gi|256948873|gb|EEU65505.1| chromosome partition protein SMC [Enterococcus faecalis DS5]
 gi|256986342|gb|EEU73644.1| chromosome partition protein SMC [Enterococcus faecalis JH1]
 gi|256988531|gb|EEU75833.1| chromosome partition protein SMC [Enterococcus faecalis E1Sol]
 gi|294452767|gb|EFG21197.1| chromosome segregation protein SMC [Enterococcus faecalis PC1.1]
 gi|306513166|gb|EFM81800.1| segregation protein SMC [Enterococcus faecalis TX4248]
 gi|315034801|gb|EFT46733.1| segregation protein SMC [Enterococcus faecalis TX0027]
          Length = 1192

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNNDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|269926771|ref|YP_003323394.1| DNA repair protein RecN [Thermobaculum terrenum ATCC BAA-798]
 gi|269790431|gb|ACZ42572.1| DNA repair protein RecN [Thermobaculum terrenum ATCC BAA-798]
          Length = 577

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 95/298 (31%), Gaps = 49/298 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           +  L+I +F   + + + F      F G+ G GK+ I++A+  +  GR      R  + +
Sbjct: 2   LAELHIRDFAIISEINISFSPGFNAFTGETGAGKSIIIDALDLVLGGRASPDMVRTGASS 61

Query: 63  DVTRI------GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVD 114
            + +       G     S      G++   ++ I  E          +IN   V + ++ 
Sbjct: 62  SLIQAMFVLEGGVLREVSELLESNGLDPSEELIITREISSSGRS-SARINGSLVPVTLLR 120

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR---------MVFAIDPRHRRRMIDFERL 165
           +L ++L    +    + +       +R  LD           V  +    R+   + + L
Sbjct: 121 QLGENL--VDITGQSEHLVLLRPSAQRDMLDHYAGAIDLRSEVSQLYNEIRQVQSELDAL 178

Query: 166 MR-GRNRLLTEGYFDSSWCSSIEAQMAEL----GVKINIAR-----VEMINALSSLIM-- 213
           +   R     E   D       E   A+L      ++   R      E +  L+      
Sbjct: 179 VSGQREA---ERRADMLRYQIEEISSADLQPGEDEELLKRRNLLANAEKLAQLADNAYQS 235

Query: 214 ----------EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                     +  Q ++     + L   L    D    A+       L   R  DS+ 
Sbjct: 236 LYSSSTSAIDQLQQAQSLLEELVRLDNSLSSNLDMISEAVVAVEEASLSIRRYRDSIE 293


>gi|169828966|ref|YP_001699124.1| DNA repair protein recN (recombination protein N) [Lysinibacillus
          sphaericus C3-41]
 gi|168993454|gb|ACA40994.1| DNA repair protein recN (Recombination protein N) [Lysinibacillus
          sphaericus C3-41]
          Length = 563

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I  F     L + F    T+  G+ G GK+ I++A+  L+ GRG       +  R
Sbjct: 2  LRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRG-----NTEFIR 56

Query: 67 IGS 69
           G+
Sbjct: 57 HGA 59


>gi|49481909|gb|AAT66666.1| DNA repair and genetic recombination protein [Geobacillus
           caldoxylosilyticus]
          Length = 573

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 51/280 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + F+   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIYLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G        A +EG+  L D           + ++  +                 ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLNDETHPCYGKCAEVGIDISEGMVVLRREIFATGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMID 161
            ++   V+ E+   L           +           LD      +      +R     
Sbjct: 112 KLVTTAVLREIGSTLVDIHGQHEHQELM--DPARHLPLLDEFGGAEIAEALAEYRSVYEK 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210
           +E+L +   +L       +     +  Q+ E+           ++   +V+++N   +  
Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYE 229

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247
            +    +  +     L   G      D        LKE Y
Sbjct: 230 ALKHSYEALSGEQRGLDWIGLAMSHLDDVASIDPELKEVY 269


>gi|68536328|ref|YP_251033.1| hypothetical protein jk1249 [Corynebacterium jeikeium K411]
 gi|68263927|emb|CAI37415.1| hypothetical protein jk1249 [Corynebacterium jeikeium K411]
          Length = 543

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          I  + I  F+   +    F  Q+ + VG NG GK+ +LEAI     GR
Sbjct: 2  ISKVRIRNFKGLQNYEATFSPQYNVIVGANGAGKSTLLEAIGLAIGGR 49



 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 15/169 (8%)

Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
           N+L+  +  Y ++    HI   +   L      +F +  +   + + +  K D       
Sbjct: 185 NSLNRGVDRYTRQLLEDHIPDEVAANLSVTLRSAFTSSTQTALESVNEKIKNDPAKPLKQ 244

Query: 266 IGPHRS-------DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
           +G              +     ++  +H   GEQ      I      L+ + T    I L
Sbjct: 245 LGIQIDPAVSGQWQSGITPAINSLPFSHAGFGEQ-----AIAKVEVSLLKSATKADLI-L 298

Query: 319 LDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETAKFM 365
           ++E   HL   K   L   +  +G   QI +T     V + L      +
Sbjct: 299 IEEPENHLSHTKLRQLLDRIKALGADQQIIVTTHSSFVLNRLGLDGLML 347


>gi|49481905|gb|AAT66664.1| DNA repair and genetic recombination protein [Geobacillus
           caldoxylosilyticus]
          Length = 573

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 90/280 (32%), Gaps = 51/280 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + F+   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIYLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G        A +EG+  L D           + ++  +                 ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLNDETHPCYGKCAEVGIDISEGMVVLRREIFATGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMID 161
            ++   V+ E+   L           +           LD      +      +R     
Sbjct: 112 KLVTTAVLREIGSTLVDIHGQHEHQELM--DPARHLPLLDEFGGAEIAEALAEYRSVYEK 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210
           +E+L +   +L       +     +  Q+ E+           ++   +V+++N   +  
Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYE 229

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247
            +    +  +     L   G      D        LKE Y
Sbjct: 230 ALKHSYEALSGEQRGLDWIGLAMSHLDDVASIDPELKEVY 269


>gi|298246203|ref|ZP_06970009.1| SMC domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297553684|gb|EFH87549.1| SMC domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 1048

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 24/208 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + +   ++Y    + F    T   G+NG GKT ++EAI F +       +  A  
Sbjct: 1   MLITRIELENIKSYRHFSVDFRRGTTAISGENGAGKTTLVEAIGF-ALFDSLPYSQ-ARF 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLE------TRDDRSVRCLQINDVVIRVVDELNK 118
            R G          + G E    +  +          D+ +   ++    V+  + EL  
Sbjct: 59  VREGEKWGRVLVHLLGGDERPYVVERRCGSGSRWLIHDEEANMRIEQGADVLDKLHELFG 118

Query: 119 HLRISWL---------VPS--MDRIFSGLSMERRRFLDRMV----FAIDPRHRRRMI-DF 162
             R   L         VP      IF   + +R++  D ++    +     +      D+
Sbjct: 119 IDRERPLDSLFRDALGVPQGTFTSIFLEAASKRKQTFDALLQIEDYKAAAEYLLDSQKDY 178

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQM 190
              M+ R   + +  +++        Q+
Sbjct: 179 REQMQQRQSRIDQLEYETRELEQWREQL 206


>gi|260579026|ref|ZP_05846928.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
          43734]
 gi|258602891|gb|EEW16166.1| conserved hypothetical protein [Corynebacterium jeikeium ATCC
          43734]
          Length = 549

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          I  + I  F+   +    F  Q+ + VG NG GK+ +LEAI     GR
Sbjct: 8  ISKVRIRNFKGLQNYEATFSPQYNVIVGANGAGKSTLLEAIGLAIGGR 55



 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 15/169 (8%)

Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
           N+L+  +  Y ++    HI   +   L      +F +  +   + + +  K D       
Sbjct: 191 NSLNRGVDRYTRQLLEDHIPDEVAANLSVTLRSAFTSSTQTALESVNEKIKNDPAKPLKQ 250

Query: 266 IGPHRS-------DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
           +G              +     ++  +H S GEQ      I      L+ + T    I L
Sbjct: 251 LGIQIDPAVSGQWQSGITPAINSLPFSHASFGEQ-----AIAKVEVSLLKSATKADLI-L 304

Query: 319 LDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETAKFM 365
           ++E   HL   K   L   +  +G   QI +T     V + L      +
Sbjct: 305 IEEPENHLSHTKLRQLLDRIKALGADQQIIVTTHSSFVLNRLGLDGLML 353


>gi|224074645|ref|XP_002304405.1| condensin complex components subunit [Populus trichocarpa]
 gi|222841837|gb|EEE79384.1| condensin complex components subunit [Populus trichocarpa]
          Length = 1176

 Score = 56.1 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 111/314 (35%), Gaps = 38/314 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA+  +V  FD       G NG GK+NIL++I F   ++  +  R +
Sbjct: 1   MYIKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          +            G E  ++I++  +       + L IN 
Sbjct: 61  NLQELVYKQGQAGITKATVSIVFDNSDRNRSPLGYEDHSEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
            + +     N    +   V +   +     +   + L+     ++  ++     RM + +
Sbjct: 120 KLAQPSQVQNLFHSVQLNVNNPHFLIMQGRIT--KVLNMKPPEILSMLEEAAGTRMYETK 177

Query: 164 R--LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           +   ++    L  +          ++ ++     K+   R++ +           + +  
Sbjct: 178 KESALK---TLEKKQSKVDEINKLLDQEILPALEKLRKERMQYMQ----WANGNSELDRL 230

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               ++       K   S     E    K+ +   +D+ + + L+   + +  +      
Sbjct: 231 KRFCIAYDYVQAVKIRDSAVVEVEHMKGKIAE---IDTSAEQMLVEIQQKETEISKLAAE 287

Query: 282 ITIAHGSTGEQKVV 295
              + G  GE K +
Sbjct: 288 KEASMG--GEVKTL 299


>gi|255973421|ref|ZP_05424007.1| purine NTPase [Enterococcus faecalis T2]
 gi|255966293|gb|EET96915.1| purine NTPase [Enterococcus faecalis T2]
          Length = 785

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 11/137 (8%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           N+++I  + +  F++     + F+     +  G NG GKT I +AI  +  G+  R  + 
Sbjct: 2   NKLRINKIYLKNFKHVNEAEINFNNNDLIVLDGPNGFGKTTIFDAIELVMTGKISRITNT 61

Query: 62  ADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            D  R+G   + FS  + ++      ++ I+ E  ++R V   +I+        +     
Sbjct: 62  IDR-RLGYEYNLFSNKSEID-----TEVRIEFENNENRIVIAKRIDSERRFTQSDKKPDN 115

Query: 121 RISW---LVPSMDRIFS 134
              +   L+P    IF 
Sbjct: 116 WNVFQTYLLPEFMSIFE 132


>gi|238019506|ref|ZP_04599932.1| hypothetical protein VEIDISOL_01375 [Veillonella dispar ATCC 17748]
 gi|237864205|gb|EEP65495.1| hypothetical protein VEIDISOL_01375 [Veillonella dispar ATCC 17748]
          Length = 1184

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +  F+++A   +  F    T  +G NG GK+NI +A+ ++   S  R  R   
Sbjct: 1   MQLLRLELKGFKSFADKTVVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+      S        +  +   D+    + +  R  R+      IN    R
Sbjct: 61  AEDIIFSGTEKRKPMSAAEVTLVFDNSDHQLDVDMAEVAITRRIYRTGESEFLINKRSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141
           + D         L K          +D I +    ERR
Sbjct: 121 LKDIHLLLADTGLGKDSMAIIGQNRIDAILNSKPEERR 158


>gi|241952042|ref|XP_002418743.1| component of condensin complex, putative; structural maintenance of
           chromosome 2 homologue, putative [Candida dubliniensis
           CD36]
 gi|223642082|emb|CAX44048.1| component of condensin complex, putative [Candida dubliniensis
           CD36]
          Length = 1172

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K+  L I  F++YA   +   +DAQ     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVDELIIDGFKSYAVRTVISNWDAQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E    IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFNNSEVSKSPIGFENCPTISVTRQIILGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    LN    +   + + + +    
Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148


>gi|322373155|ref|ZP_08047691.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C150]
 gi|321278197|gb|EFX55266.1| putative RecF/RecN/SMC N domain protein [Streptococcus sp. C150]
          Length = 1177

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKSIEMQGFKSFADKTQVVFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+      ++      ++  +G    A  SI++E            I+   +R
Sbjct: 61  MPDVIFAGTEVRKALNYAEVAVTLDNSDGFIADAGESIRVERHIYRNGDNDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    ERR   +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNAKPEERRAIFE 162


>gi|317057720|ref|YP_004106187.1| chromosome segregation protein SMc [Ruminococcus albus 7]
 gi|315449989|gb|ADU23553.1| chromosome segregation protein SMC [Ruminococcus albus 7]
          Length = 1191

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 86/274 (31%), Gaps = 48/274 (17%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + ++ L +  F+++     L F    T  VG NG GK+NI +A+ ++      +  R   
Sbjct: 1   MYLRCLELQGFKSFPDKTVLTFGKGITAVVGPNGSGKSNISDAMRWVMGEQSSKALRGEK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
            A V   G  +     F      ++  +G   +  ++ +   +  +       IN   +R
Sbjct: 61  MAGVIFHGCATRKESPFAQVTLTIDNEDGALGVDSEMVSVTRKLYKNGDSEYLINGSPVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +  I +G   +RR   +        R+        
Sbjct: 121 LKDVNELFMDTGLGKDGYSIVGQGRIADIVNGKGSDRREIFEEAAGVAKFRY-------- 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
                      +   +     + +  +A L   I       I  L     +  + +    
Sbjct: 173 ----------KKQEAERKLIDAEDN-IARL-NDIIAELEARIGPLEKQCEKAKKFKVLDD 220

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            K +L   +       +    E+Y  KL +  + 
Sbjct: 221 EKTALEVSV-------WVTKLEQYRAKLAENEER 247


>gi|195123793|ref|XP_002006386.1| GI21017 [Drosophila mojavensis]
 gi|193911454|gb|EDW10321.1| GI21017 [Drosophila mojavensis]
          Length = 1177

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 96/275 (34%), Gaps = 33/275 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + +K L +  F++Y     +  FD + T   G NG GK+NIL++I F   +S  +  R +
Sbjct: 1   MYVKKLVLDGFKSYGRRTEIEGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +IS+  +       + L IN 
Sbjct: 61  ALQDLVYKNGQAGITKATVTIVFDNTNAQQCPPGYEKCREISVTRQVVVGGKNKFL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMID 161
            +++     +    +   V + + +           M+ +  L  +  A      +   D
Sbjct: 120 KLVQNKKVQDFFCSMQLNVNNPNFLIMQGKIQQVLNMKPKEVLSMVEEAAGTSLYKTKRD 179

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             + +  +     EG    +  + +E ++     K+   R            +    E  
Sbjct: 180 ATKTLIEK----KEGKLRETS-ALLEEEVLPKLDKLRKERAAY-QEYQKTCRDI---EFL 230

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            HI +S          QS  A +++   ++   R+
Sbjct: 231 THIHISARYLKLCDALQSVEATEQKIEHRIATCRE 265


>gi|225868940|ref|YP_002744888.1| DNA repair protein [Streptococcus equi subsp. zooepidemicus]
 gi|225702216|emb|CAW99951.1| putative DNA repair protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 553

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 89/259 (34%), Gaps = 27/259 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ L   R     +  +V R
Sbjct: 2   LLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMLLGAR-----ASTEVIR 56

Query: 67  IGS-----PSFFSTFA--RVEGMEGLADISIKLETRDDR-----SVRCLQIND--VVIRV 112
            G+       FFS  A   +  +   + IS++ E    R          +IN   V +  
Sbjct: 57  HGADKAEIEGFFSVDANPHLAAVLAESGISMEEELILRRDIFANGRSVSRINGQMVTVST 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRR----FLDRMVFAIDPRHRRRMIDFERLMRG 168
           + +L + L    +    D+         +     F D     +   +++    ++ L R 
Sbjct: 117 LKKLGQFL--VDIHGQHDQEELMRPQLHQHILDSFGDEAFDQLKQSYQQIFDRYKALRRQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMIN-ALSSLIMEYVQKENFPHIKL 226
                       +    +  Q+ E+    +     +++N     L+      +      L
Sbjct: 175 ALEKQKNEKEHQARLDLLAFQIGEIDAADLVRGEDDLLNQERQRLLNHKKIADTLTSAYL 234

Query: 227 SLTGFLDGKFDQSFCALKE 245
           SL         Q   ++ E
Sbjct: 235 SLDNEDFSSLSQVRSSMNE 253


>gi|126653069|ref|ZP_01725204.1| DNA repair protein [Bacillus sp. B14905]
 gi|126590170|gb|EAZ84294.1| DNA repair protein [Bacillus sp. B14905]
          Length = 563

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I  F     L + F    T+  G+ G GK+ I++A+  L+ GRG       +  R
Sbjct: 2  LRELSIRNFAIIEDLTVSFSEGLTVLTGETGAGKSIIIDAVHLLAGGRG-----NTEFIR 56

Query: 67 IGS 69
           G+
Sbjct: 57 HGA 59


>gi|310815120|ref|YP_003963084.1| chromosome segregation protein SMC [Ketogulonicigenium vulgare Y25]
 gi|308753855|gb|ADO41784.1| chromosome segregation protein SMC [Ketogulonicigenium vulgare Y25]
          Length = 729

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 62/165 (37%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MQFTRLRLNGFKSFVDQTELVIQPGLTGVVGPNGCGKSNLLEALRWVMGETRPSAMRGGG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G+      +       ++  + +A         +++  R  R +    +IN  
Sbjct: 61  MEDVIFAGASTRPARAHAEVALLIDNSDRVAPAGFNDNDQLEIMRRITRDAGSAYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + +     RRR L+
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPTSRRRILE 165


>gi|303236651|ref|ZP_07323232.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
 gi|302483155|gb|EFL46169.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
          Length = 63

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA--QHTIFVGDNGVGKTNILEAISFLSPG 53
          +++K L I E++N       F     +  F+G NG GK+N++EAI+ +  G
Sbjct: 1  MRLKSLYIQEYKNIKEQTFDFSNNTGYIAFIGLNGSGKSNLIEAIALIFNG 51


>gi|168019040|ref|XP_001762053.1| condensin complex component SMC2 [Physcomitrella patens subsp.
           patens]
 gi|162686770|gb|EDQ73157.1| condensin complex component SMC2 [Physcomitrella patens subsp.
           patens]
          Length = 1208

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 92/277 (33%), Gaps = 40/277 (14%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA+      FD       G NG GK+NIL++I F   ++  +  R A
Sbjct: 1   MYIKEICLEGFKSYATRTTVTNFDPVFNAITGYNGSGKSNILDSICFVMGITNLQQVRVA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          +            G E   +I+I  +       + L IN 
Sbjct: 61  NLQELVYKQGQAGVTKATVSIVFSNADKSRSPIGYEEHDEITITRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
            + +     N    +   V +   +     +   + L+      +  ++     RM + +
Sbjct: 120 HLAQPSKVQNLFHSVQLNVNNPHFLIMQGRIT--KVLNMKPQETLSMLEEAAGTRMYEMK 177

Query: 164 R--LMRGRNRLLTEGYFDSSWCS-SIEAQMAELGVKINIARVEMIN--------ALSSLI 212
           +   ++     L +           +   +     K+   R + +               
Sbjct: 178 KEGALK----TLEKKQMKVDEIDNVLNHDILPALEKLRKERAQYMQWSSGNGQLERLKRF 233

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
               Q  +   +K S    +  +  +    L+EEY K
Sbjct: 234 CIAYQYSSADQVKNSALSEISDRKSK-IAELQEEYFK 269


>gi|37519840|ref|NP_923217.1| DNA repair protein [Gloeobacter violaceus PCC 7421]
 gi|35210831|dbj|BAC88212.1| DNA repair protein [Gloeobacter violaceus PCC 7421]
          Length = 566

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 103/311 (33%), Gaps = 37/311 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR----GFRRASYA 62
           +  L I  F    +L L F     +  G+ G GK+ IL+A+  +  GR      R  +  
Sbjct: 2   LTHLRIENFALIDNLALDFAGGLNVLTGETGAGKSIILDALDVVLGGRVSGAQVRTGAQR 61

Query: 63  DVT--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV--VDELNK 118
            V     G  +  + +   + ++ L +  + +     ++ R  ++N V++    + EL +
Sbjct: 62  AVIEATFGPSAAIADWLAAQQIDSLEEGLVVVREISGKTNRA-RVNGVLVNQAVLRELRE 120

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            L          ++       +   LD     I PR  R    +E L R +  L  +   
Sbjct: 121 QLLEITAQGQSLQLEK--PEVQLELLDN-YGEIAPRRERFRQVYETLQRRKGELARKKAA 177

Query: 179 DSSWCSSIE------AQMAELG-------VKINIARVEMINA---------LSSLIMEYV 216
                  ++       +++           ++   R  + +A         L  ++ E  
Sbjct: 178 RDDRLQQLDLFRFQFEELSRAALDDPQEEEQLLADRSRLAHAVELQHNSLKLYEMLYEGA 237

Query: 217 QKENFPHIKLSLTGFL---DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
             +      L  +  L    G++D S   L E     L   ++      R          
Sbjct: 238 LDQPAVTDLLGQSSELLIQMGEYDASLVPLGEMLENALVQVQECARAVNRYGETVESDPE 297

Query: 274 IVDYCDKAITI 284
            ++Y +K +  
Sbjct: 298 TLEYTEKRLRQ 308


>gi|332976627|gb|EGK13468.1| hypothetical protein HMPREF9374_0890 [Desmospora sp. 8437]
          Length = 530

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K L++  F+++A    L F    T  VG NG GK+N+ + + ++      +  R AS
Sbjct: 1  MHLKRLDMIGFKSFADRTELEFTPGVTAVVGPNGSGKSNVTDGMRWVLGEQSAKSLRGAS 60

Query: 61 YADVTRIGSPS 71
            DV   GS S
Sbjct: 61 MQDVIFSGSDS 71


>gi|303229657|ref|ZP_07316445.1| chromosome segregation protein SMC [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515782|gb|EFL57736.1| chromosome segregation protein SMC [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 1184

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 74/213 (34%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +  F+++A   +  F    T  +G NG GK+NI +A+ ++   S     R   
Sbjct: 1   MQLLRLELKGFKSFADKTVVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVHNLRGQR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   G+      S        +  +G  D+ ++      R  R       IN    R
Sbjct: 61  AEDIIFSGTEKRKPMSAAEVTLVFDNADGQLDVDMQEVAITRRIYRTGESEFLINKRTCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D I +    ERR     ++F       R  I+ E
Sbjct: 121 LKDIHLLLADTGLGKDSMAIIGQNRIDAILNSKPEERR-----LIFEDVAGISRFKINKE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
             +R                ++IE Q+  L  K
Sbjct: 176 DALRRIASTDRNMERVRDIMATIEEQLGPLAEK 208


>gi|196250835|ref|ZP_03149521.1| SMC protein-like protein [Geobacillus sp. G11MC16]
 gi|196209673|gb|EDY04446.1| SMC protein-like protein [Geobacillus sp. G11MC16]
          Length = 508

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +  L I  FR+   + + F     I +G N  GK+NI++A+  L
Sbjct: 1  MFVSDLYIKNFRSIKDIHVSFKEGKNILIGKNNAGKSNIIKALDLL 46


>gi|49481895|gb|AAT66659.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A88]
          Length = 573

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 91/275 (33%), Gaps = 49/275 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------ISIKLETRDD----------RSVRCLQIND 107
            G+       A +EG+  L D           + ++  D                 +IN 
Sbjct: 57  FGAEK-----AEIEGLFLLDDDRHPCWQKCADVGIDASDGMIVLRRDIFANGKSVCRING 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++   V+ ++   L           +           LD             +  + R 
Sbjct: 112 KLVTTAVLRDIGATLVDIHGQHEHQELM--DPSRHLPLLDEFGGL---EAAEALARY-RA 165

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  R   L          S  E QMA         R++++       +E          +
Sbjct: 166 VYERYEELGNKLKK---LSENEQQMA--------HRLDLLT-FQLREIEQAALXPGEDER 213

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           L         F + + AL++ Y     +GR +DS+
Sbjct: 214 LMEEKVRIVNFQKIYTALQKSYEALSGEGRGLDSI 248


>gi|313127099|ref|YP_004037369.1| ATPase involved in DNA repair [Halogeometricum borinquense DSM
           11551]
 gi|312293464|gb|ADQ67924.1| ATPase involved in DNA repair [Halogeometricum borinquense DSM
           11551]
          Length = 894

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++   + +  F+ YA   L      T+  G NG GK+++LEA  F   G      +  DV
Sbjct: 1   MRFDRIRLQNFKPYAETDLDLTDGVTVIHGLNGSGKSSLLEACFFALYGARALDENLEDV 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
              G+       A +E        S  +  R  +S   +Q
Sbjct: 61  MTTGTEE-----AEIELWFTHDGGSYHIHRRLRKSGDRVQ 95



 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 74/203 (36%), Gaps = 23/203 (11%)

Query: 181 SWCSSIEAQMAELGVKINIAR---------VEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           ++   ++ ++A L  K +  +         +E + AL     E   + +      + T  
Sbjct: 660 NYLEQVDEELATLREKRDSLQSDIGGVNGELEQLEALREDRDELAARVDALESLHAETEE 719

Query: 232 LDGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRTLIGPHRSD-----LIVDYCDKAITI 284
           L+  +      L++   + L        D +         R D      +      A+  
Sbjct: 720 LEAMYGDLRAELRQRNVETLERMLNETFDLVYGNDAYSRIRLDGEYELTVFQKDGTALDP 779

Query: 285 AHGSTGEQKVVLVGIFLAHARLISN-TTGFAPI--LLLDEISAHLDEDKRNALFRIVTDI 341
              S GE+ +  + +  A  RL++    G AP+  L+LDE +  LD    + L  +V ++
Sbjct: 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGAAPMPPLILDEPTVFLDSGHVSRLVDLVDEM 839

Query: 342 GS----QIFMTGTDKSVFDSLNE 360
                 QI +   D  +  + +E
Sbjct: 840 RDLGVRQIIIVSHDDELVGAADE 862


>gi|22000946|gb|AAL82734.1| structural maintenance of chromosome protein [Aspergillus
           fumigatus]
          Length = 1186

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 75/266 (28%), Gaps = 23/266 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + +++F  Y S       +  + +G NG GK+ ++ AI   L  G     R     
Sbjct: 109 AIVRIKVTDFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPG 168

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-------VVDE 115
           +  + G           +G     +  I    + + +     IN                
Sbjct: 169 EFVKHGCREASIEIELAKGPGLRKNPVISRTIKREGNKSSFTINGKQASLAQVKKFAQSF 228

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
             +   +   +P                      A  P         ++L   + +L  +
Sbjct: 229 AIQIDNLCQFLPQDRVSEFAALTPVELLHSTQRAAAGPEMIEWHESLKKLRAEQKKLQLD 288

Query: 176 GYFDSSWCSSIE--AQMAELGVKINIARV------EMINALSSLIMEYVQKENFPHIKLS 227
              D    +++E   +M  + V+    R       EM+  L  +I     +      K  
Sbjct: 289 NQSDKDLLANLENRQEMQRVDVERMRQRAQIKRKIEMLEHLRPVIQYREARNELNQKKTE 348

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFD 253
                  +  +    L+ E A  L  
Sbjct: 349 QR-----RLRKELEDLEAELAPALRA 369


>gi|37524600|ref|NP_927944.1| hypothetical protein plu0598 [Photorhabdus luminescens subsp.
          laumondii TTO1]
 gi|36784024|emb|CAE12893.1| unnamed protein product [Photorhabdus luminescens subsp.
          laumondii TTO1]
          Length = 522

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          I+ L +  F+ + +L L FD +  I VG N  GK+++L+AI
Sbjct: 4  IRRLVLKNFKRFKNLELEFDPELNILVGGNEAGKSSVLQAI 44


>gi|269123683|ref|YP_003306260.1| SMC domain-containing protein [Streptobacillus moniliformis DSM
           12112]
 gi|268315009|gb|ACZ01383.1| SMC domain protein [Streptobacillus moniliformis DSM 12112]
          Length = 1180

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           + +K L I+ F++++    + F    T  VG NG GK+NIL+AI ++   + +   R A 
Sbjct: 1   MYLKALEINGFKSFSIKTIIDFTQGITAIVGPNGSGKSNILDAILWVLGEQSYKNIRAAM 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
            +DV   G  +   +  A V  +    D  +  E  + +  R +  N 
Sbjct: 61  SSDVIFSGGKNKKHANSAEVSLVIDNTDRYLDYEADEVKITRRIYRNG 108


>gi|147860968|emb|CAN78748.1| hypothetical protein VITISV_033290 [Vitis vinifera]
          Length = 213

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 17/123 (13%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA+  +V  FD       G NG GK+NIL++I F   ++  +  R +
Sbjct: 1   MYIKEICLEGFKSYATRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          V            G +   +I++  +       + L    
Sbjct: 61  NLQDLVYKQGQAGITKATVSVVFDDFDRSRSPLGYQDCPEITVTRQIMXGGRNKYLINGH 120

Query: 108 VVI 110
           +  
Sbjct: 121 LAQ 123


>gi|16124628|ref|NP_419192.1| smc protein [Caulobacter crescentus CB15]
 gi|221233316|ref|YP_002515752.1| chromosome partition protein smc [Caulobacter crescentus NA1000]
 gi|6007012|gb|AAF00713.1|AF172724_1 structural maintenance of chromosomes protein homolog Smc
           [Caulobacter crescentus CB15]
 gi|13421528|gb|AAK22360.1| smc protein [Caulobacter crescentus CB15]
 gi|220962488|gb|ACL93844.1| chromosome partition protein smc [Caulobacter crescentus NA1000]
          Length = 1147

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           ++ + L +S F+++        +   T  VG NG GK+N+LEA+ ++         R   
Sbjct: 1   MQFQRLRLSGFKSFVEPTEFRIEPGLTGIVGPNGCGKSNLLEALRWVMGANSAKAMRAGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRS-VRCLQINDV 108
             DV   GS +            ++  +  A         +++  R DR      +IN  
Sbjct: 61  MDDVIFAGSGARPARNHADVTLTIDNADRTAPAQFNDDPILEVVRRIDRGEGSTYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      +       RRR L+
Sbjct: 121 EVRARDVQLLFADASTGANSPALVRQGQISELIGAKPQNRRRILE 165


>gi|226945099|ref|YP_002800172.1| chromosome segregation protein SMC [Azotobacter vinelandii DJ]
 gi|226720026|gb|ACO79197.1| chromosome segregation protein SMC [Azotobacter vinelandii DJ]
          Length = 1162

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/363 (16%), Positives = 114/363 (31%), Gaps = 61/363 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVSFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGME-GLADISIKLETRDDRSVRCLQIND 107
             DV   GS S            F +    + G   G A+ISI+     D       +N 
Sbjct: 61  MTDVIFNGSNSRKPVTQASIELIFDNADGTLTGEYAGYAEISIRRRVTRDGQN-SYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
           V  R  D +      + L P            R+      + R F++             
Sbjct: 120 VKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISRLIEARPEDLRNFIEEAAG--------- 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +     + +  S +  ++     ++                E   K
Sbjct: 170 ISKYKERRRETENRIRRTQENLARLSDLREELERQLERLQRQAQAAEKYQECKAEERRLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY- 277
                ++        G+ +Q     +      + + R  D+   R        DL   + 
Sbjct: 230 AQLAALRWRALNEQVGQREQVIGDQEVALEALIAEQRNADAGIERLRD--EHHDLAERFH 287

Query: 278 --------CDKAITIAHGS--TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
                       I     S   G+Q+     +      L              E +AHLD
Sbjct: 288 QVQGRFYSLGADIGRVEQSIQHGQQR-----LRQLQNDLQEAEKNRQ------ETAAHLD 336

Query: 328 EDK 330
           +D+
Sbjct: 337 QDR 339


>gi|307175909|gb|EFN65722.1| Structural maintenance of chromosomes protein 6 [Camponotus
           floridanus]
          Length = 1198

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62
           K+K + +  F  + +L +V +      VG NG GK+ IL A++     R     R  S  
Sbjct: 40  KVKSIRVRNFMCHEALEIVLNENVNFIVGRNGSGKSAILTALTVGLGARANVTSRGTSVK 99

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISI 90
           +  + G  S       +   +      I
Sbjct: 100 EFIKKGKNSAIIEITLINKGDTAFKHDI 127


>gi|299822990|ref|ZP_07054876.1| DNA repair protein RecN [Listeria grayi DSM 20601]
 gi|299816519|gb|EFI83757.1| DNA repair protein RecN [Listeria grayi DSM 20601]
          Length = 566

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 27/206 (13%)

Query: 5   IK--IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +K  ++ L I  F    SL L F+   T+  G+ G GK+ I +A+  L  GRG      A
Sbjct: 1   MKEVLQELTIKNFAIIDSLALSFEEGMTVLTGETGAGKSIIFDALGLLIGGRG-----SA 55

Query: 63  DVTRIGSPS---------FFSTFARVEGMEGL----ADISIKLETRDDRSVR-CLQINDV 108
           D  R G              +  A  E ++       D  + LE    +S +   +IN  
Sbjct: 56  DFIRHGEQRLELQGLFSFHETNTACKELLDENGIEFNDNEVILERSLHKSGKNTCRINGK 115

Query: 109 VIRV--VDELNKHLRISWLVPSMDRIFSGL---SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           ++    + +L   L           +        +  R F+   +      ++    +++
Sbjct: 116 LVTTTFLRQLGSRLLDIHSQHEHQELMDENYHLPLLDR-FIGNKIAKRLENYQTAYENYQ 174

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQ 189
            L +            +     +  Q
Sbjct: 175 ALQKEWQNWTKNEQEIARRIDMLHFQ 200


>gi|55821299|ref|YP_139741.1| chromosome segregation SMC protein [Streptococcus thermophilus LMG
           18311]
 gi|55737284|gb|AAV60926.1| chromosome segregation SMC protein [Streptococcus thermophilus LMG
           18311]
          Length = 1177

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKSIEMQGFKSFADKTKVVFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+      ++      ++  +G       +I++E            I+   +R
Sbjct: 61  MPDVIFAGTEVRKALNYAEVAVTLDNSDGFIAGVGETIRVERHIYRNGDNDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    +RR   +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNAKPEDRRAIFE 162


>gi|71027371|ref|XP_763329.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350282|gb|EAN31046.1| hypothetical protein TP03_0311 [Theileria parva]
          Length = 992

 Score = 56.1 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + +  FR Y  L L      +   VG NG GK+N+L A+SF
Sbjct: 1  MYIKLIRLKNFRTYKDLTLFSLSPNYNAIVGLNGSGKSNVLLAVSF 46


>gi|300784656|ref|YP_003764947.1| ATPase [Amycolatopsis mediterranei U32]
 gi|299794170|gb|ADJ44545.1| ATPase [Amycolatopsis mediterranei U32]
          Length = 390

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 13/96 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--------- 57
           I+ L I  FR    + L      T  +G NG GK+ + +A+ FLS     R         
Sbjct: 7   IERLRIRNFRVLRDVELAGLTPVTALLGPNGSGKSTVFDALDFLS--ESLRAGLRSAWNQ 64

Query: 58  RASYADVTRIGSPSFFSTFA--RVEGMEGLADISIK 91
           R   AD+   GS          R+EG      ++I+
Sbjct: 65  RGGAADIVTHGSTGPVEIEVTCRIEGAVAEYRLAIE 100


>gi|284048840|ref|YP_003399179.1| chromosome segregation protein SMC [Acidaminococcus fermentans DSM
           20731]
 gi|283953061|gb|ADB47864.1| chromosome segregation protein SMC [Acidaminococcus fermentans DSM
           20731]
          Length = 1187

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 77/225 (34%), Gaps = 38/225 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++K  +   F+++A  + + F+   T  VG NG GK+NI +AI ++   +     R   
Sbjct: 1   MRLKSFSAHGFKSFADKVNIDFEPGITAIVGPNGSGKSNISDAIRWVLGEQSVKYLRGTK 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             DV   GS        A V+ +    D S+ ++  +    R +         IN    R
Sbjct: 61  MEDVIFAGSSGRRPMGMAEVDLVFDNTDHSLPVDFDEVSLQRRVFRSGDSEYIINGKNCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          +D I +    +RR   +             +  + 
Sbjct: 121 LKDVVALFADTGLGRGSLSIIGQNKIDEILNSRPEDRRSIFEEAAG---------IAKYR 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSS------IEAQMAELGVKINIARV 202
             +R +  L       ++          IE Q+  L      AR 
Sbjct: 172 --LRKKEALRKLDDTAANLLRIQDIQSEIENQLVPLEAAAEKARQ 214



 Score = 36.4 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K   ++  S GE+ + ++ +  A       T   AP ++LDEI A LDE   +   + 
Sbjct: 1083 GKKMRNLSLFSGGERALTVIALLFALL-----TYQPAPFVILDEIDAPLDETNIDRFAQF 1137

Query: 338  VTDIGSQI-FMTGTDK 352
            +   G Q  F+  T +
Sbjct: 1138 LKAYGQQTQFIVITHR 1153


>gi|330939978|gb|EGH43179.1| chromosome segregation protein SMC [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 1162

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHQNLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++      L G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|325860349|ref|ZP_08173468.1| hypothetical protein HMPREF9303_0079 [Prevotella denticola CRIS
          18C-A]
 gi|325482143|gb|EGC85157.1| hypothetical protein HMPREF9303_0079 [Prevotella denticola CRIS
          18C-A]
          Length = 83

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK + I  FR+Y   +  +      T+ +GDNG GKT   EA+ +L
Sbjct: 1  MIIKEIRIKNFRSYYGDNNHIEVTPGLTLILGDNGDGKTTFFEALQWL 48


>gi|322411351|gb|EFY02259.1| putative chromosome segregation SMC [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 1181

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 34/214 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEMQGFKSFADKTKIEFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEG---LADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++      ++  +     A   I++E    R+      I+   +R
Sbjct: 61  MPDVIFAGTENRSPLNYAQVAVVLDNSDHFIKEAKEVIRIERHIYRNGDSDYLIDGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +             ++ ++
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEE---------AAGVLKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCS----SIEAQMAEL 193
              +     L +   +          +E Q+  L
Sbjct: 172 TRKKETQSKLNQTQDNLDRLDDIIYELENQLVPL 205


>gi|229620418|gb|ACQ84165.1| truncated structural maintenance of chromosomes family protein 6A
           [Arabidopsis thaliana]
          Length = 876

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 83/271 (30%), Gaps = 35/271 (12%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62
           KI  + +  F  +++L + F        G NG GK+ IL A+      R     R A+  
Sbjct: 22  KILRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAATLK 81

Query: 63  DVTRIGSPSFFSTFARVEGM----------------EGLADISIKLETRDDRSVRCLQIN 106
           D  + G  S+   +  ++                  E     S  L    D   R +   
Sbjct: 82  DFIKTGC-SYALVYVELKNQGEDAFKPEIYGDTLIIERRISDSTSLTVLKDHQGRKISSR 140

Query: 107 DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
              +R   EL +H  I    P           + R FL         +   +      L+
Sbjct: 141 KEELR---ELVEHYNIDVENPC----VIMSQDKSREFLHSGNDKDKFKFFYKAT----LL 189

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           +  + +L       +  +++  +M +    I       IN L   I      E      L
Sbjct: 190 QQVDDILQSIGTKLNSANALLDEMEKTIKPIEKE----INELLEKIKNMEHVEEITQQVL 245

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            L   L   +        +E  +K+   ++ 
Sbjct: 246 HLKKKLAWSWVYDVDRQLKEQNEKIVKFKER 276


>gi|226530720|ref|NP_001140280.1| hypothetical protein LOC100272324 [Zea mays]
 gi|194698834|gb|ACF83501.1| unknown [Zea mays]
          Length = 395

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          +I  L +  F++Y     +      T  +G NG GK+N+++AISF+   R    R A   
Sbjct: 21 RIDRLVVENFKSYKGEQTIGPFVDFTAIIGPNGAGKSNLMDAISFVLGVRSTHLRGAQLK 80

Query: 63 DVT 65
          D+ 
Sbjct: 81 DLI 83


>gi|42518980|ref|NP_964910.1| hypothetical protein LJ1055 [Lactobacillus johnsonii NCC 533]
 gi|41583267|gb|AAS08876.1| hypothetical protein LJ_1055 [Lactobacillus johnsonii NCC 533]
          Length = 578

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 130/372 (34%), Gaps = 56/372 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  +NI  FRNY  + +  ++  ++ +G N VGKTN + A+  L      R  S  D+
Sbjct: 1   MLIYRVNIKGFRNYEDVDVYLNSS-SLIIGSNNVGKTNFIYALRLLFD----RNLSENDL 55

Query: 65  TRIGSP-SFFSTFARVEGMEGLADISIKL---ETRDDRSVRCLQINDVVIRVVDELNKHL 120
             + S  + +S   +VE    L DI+ +    E + + +   L +     +  D + +  
Sbjct: 56  DLLDSDFNAYSHSDKVEITAYLKDINEECLLSEFKGNINEGKLILKYTKEKNQDYILQA- 114

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                     +     S  RR  +  +    +  ++    + + L+     LL+E   + 
Sbjct: 115 ---GFSEDTMQELKSRSYLRRLSMQYVDTNRN-LYKYLRKERQNLLLNSQELLSEEQKND 170

Query: 181 SWCSSIEAQ--MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
               +IE Q  +  +  KI+   +  I      + + +   +  +   ++  F+ G  D 
Sbjct: 171 DKTKTIEIQKNLNSINEKISS--LNYIKNALENVNKELSSLSVENEDQNIQ-FVAGHND- 226

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
                 E+    +      +        GP     +    D      + +T   +     
Sbjct: 227 -----AEKMLSDVALSYSSEE-------GP-----LTLGGDGRNNQIYLATWRAR----- 264

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDS 357
                 + +           ++E  AHL   ++  L + +T  +  Q+ +T         
Sbjct: 265 ------QELKAGPDHVTFYAIEEPEAHLHPHQQRKLAQYLTKSLKGQVIVTS-------H 311

Query: 358 LNETAKFMRISN 369
             + A+  +  N
Sbjct: 312 SPQIAEIFKAEN 323


>gi|323136710|ref|ZP_08071791.1| chromosome segregation protein SMC [Methylocystis sp. ATCC 49242]
 gi|322398027|gb|EFY00548.1| chromosome segregation protein SMC [Methylocystis sp. ATCC 49242]
          Length = 1151

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 108/299 (36%), Gaps = 50/299 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K + L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFERLRLLGFKSFCEPTDFLIEPGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +F      ++  + LA        SI++  R +R      +IN  
Sbjct: 61  MDDVIFSGGGSRPARNFAEVGLVLDNSQRLAPAAFNDSDSIEVTRRIEREQGSNYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR---MVFAIDPRH-- 155
            +R  D   L          PS+ R      I S     RRR L+    +      RH  
Sbjct: 121 EVRARDVQLLFADAATGARSPSLVRQGQIGEIISAKPQARRRILEDAAGVAGLHSRRHEA 180

Query: 156 -------RRRMIDFERLMRG---RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
                     +   E +++    ++  L      +S          +L  KI     E +
Sbjct: 181 ELRLNAASENLTRLEDVLKQVESQSDSLKRQARQASRYR-------DLAAKIRQN--EAL 231

Query: 206 NALSSLIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK-KLFDGRKMDSMSR 262
            AL S  +   Q ++    ++  L        +Q+  A  +  A  +L   R+ ++ + 
Sbjct: 232 AALVSYQIATDQLRDAAQKLEADLRNVQARTLEQAEAAKFQAIAAHELPALREREAEAG 290



 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 26/195 (13%)

Query: 173  LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF- 231
            L E   D     ++  +  +   +I   R +M++     + E ++K       L+  G  
Sbjct: 934  LEELRGDRERLGAVNLRAEDELTEIEAQREKMMSE-RDDLNEAIKKLRSAIASLNKEGRE 992

Query: 232  -LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD--------KAI 282
             L   FD+     KE +   LFDG   +             D +    D        K  
Sbjct: 993  RLLAAFDKVNAHFKELF-TLLFDGGSAELQL------VESDDPLEAGLDILARPPGKKPQ 1045

Query: 283  TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
            T+   S GEQ +  + +  A        T  +PI +LDE+ A LD+        ++ ++ 
Sbjct: 1046 TMTLLSGGEQALTAMSLIFAVF-----LTNPSPICVLDEVDAPLDDSNVERFCDLLEEMR 1100

Query: 343  SQI---FMTGTDKSV 354
             +    F+T T   +
Sbjct: 1101 KKTDTRFVTITHNPI 1115


>gi|300858883|ref|YP_003783866.1| hypothetical protein cpfrc_01466 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686337|gb|ADK29259.1| hypothetical protein cpfrc_01466 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302206583|gb|ADL10925.1| Putative SMC domain-containing protein [Corynebacterium
           pseudotuberculosis C231]
 gi|308276826|gb|ADO26725.1| Conserved hypothetical protein [Corynebacterium pseudotuberculosis
           I19]
          Length = 543

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/396 (14%), Positives = 114/396 (28%), Gaps = 104/396 (26%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR------------ 54
           I  + I  +R +       +A   I VG N  GK+ +LEAI+    GR            
Sbjct: 5   ITRVQIRGYRRFQDFTFEPEAGTNIIVGGNEAGKSTLLEAITLALAGRVNGVRAKEYLNP 64

Query: 55  ---GF-------------RRASYADVTRIGSPSFFSTFARVEGMEGLADIS----IKLET 94
                             R    A   RI           +E + G+ ++     + L  
Sbjct: 65  YWFNHTMVHDFFEKPPNERSHRDAPTFRIDV-YLDVESGELEKLRGVNNMENADSVGLSI 123

Query: 95  RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS----GLSMERRRFLDRMVFA 150
                      +    + +D+  +      ++P    +      G    +RR  +  +  
Sbjct: 124 -------WAHPDPEYTQELDDYFQQEDCPEVLPVEYYMVEWLSFGGHPVQRRPKELGISL 176

Query: 151 IDPR--HRRRMIDF--ERLMRGRNRLLTEGYFDSSWCSSIEAQM-AELGVKINIARVEMI 205
           ID R     R +D+   +++  R         D S  S    ++ A LG        E++
Sbjct: 177 IDSRTIRSERGVDYYTRQILETR-----LDPKDRSRVSVDHRKLRATLG-------REVL 224

Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
             L+  + E  Q      + L +       ++                            
Sbjct: 225 RDLNEELAEENQSIPGAVVGLQIDQSRSASWEA--------------------------T 258

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           + P   D+ +    +            K +L          +      + ++ ++E   H
Sbjct: 259 LIPDVDDVPLSMAGQGNQAVA------KTIL---------AMGRNADTSSLVFIEEPENH 303

Query: 326 LDEDKRNALFRIV--TDIGSQIFMTGTDKSVFDSLN 359
           L   +   L   +  +    Q+F+T     + + L 
Sbjct: 304 LSHTRMRQLISYIERSAQNRQVFITTHSSYILNRLG 339


>gi|294791674|ref|ZP_06756822.1| putative cell division protein Smc [Veillonella sp. 6_1_27]
 gi|294456904|gb|EFG25266.1| putative cell division protein Smc [Veillonella sp. 6_1_27]
          Length = 1184

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 21/158 (13%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +  F+++A   +  F    T  +G NG GK+NI +A+ ++   S  R  R   
Sbjct: 1   MQLLRLELKGFKSFADKTIVKFSPGMTAVIGPNGSGKSNITDAMKWVLGESNVRNLRGQK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+      S        +  +   DI    + +  R  R+      +N    R
Sbjct: 61  AEDIIFSGTEKRKPMSAAEVTLVFDNSDQQLDIDMAEVAITRRIYRTGESEFLVNKRSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141
           + D         L +          +D I +    ERR
Sbjct: 121 LKDIHLLLADTGLGRDSMAIIGQNRIDAILNSKPEERR 158


>gi|241205545|ref|YP_002976641.1| DNA repair protein RecN [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859435|gb|ACS57102.1| DNA repair protein RecN [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 557

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 101/299 (33%), Gaps = 43/299 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F+   ++  G+ G GK+ +L+++S    GRG       D+ R
Sbjct: 2   LIQLSIRDIVLIERLDLAFETGLSVLTGETGAGKSILLDSLSLALGGRG-----DGDLVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ------------INDVVIR-VV 113
            G      T     GME  A   ++    DD      +            +ND  +   +
Sbjct: 57  HGEDKGQVTAVFDVGMEHGARTLLRENGIDDEGDLIFRRQQSADGRTKAYVNDQPVSVQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRF-----LDRMVFAIDPRHRRRMIDFERLMRG 168
                 + +       DR     +  R        L   V  +   + R   D ER ++ 
Sbjct: 117 MRQAGQMLVEIHGQHDDRALVDTNAHRTLLDAFAGLTDEVSEVSRLY-RLWRDSERTLKN 175

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMI--NALSSLIMEYVQ--- 217
               +     ++ +  S   ++ +L        ++   R +M+    ++  I E  +   
Sbjct: 176 HREKVESAAREADYLRSSVEELEKLSPQDGEEEELADRRQKMMKAERIAGDIAEASEFLN 235

Query: 218 --KENFPHI-----KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR-KMDSMSRRTLIGP 268
                 PHI     +L           +    L +    +L + + ++++  R+T   P
Sbjct: 236 GNASPVPHIASLVRRLERKSHEAPGLLEDTVTLLDAALDQLSNAQMEVEAALRKTEYDP 294


>gi|149174748|ref|ZP_01853373.1| hypothetical protein PM8797T_26470 [Planctomyces maris DSM 8797]
 gi|148846442|gb|EDL60780.1| hypothetical protein PM8797T_26470 [Planctomyces maris DSM 8797]
          Length = 454

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 17/111 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYADV 64
           +K + +  F +++   +      T+  G N  GK+  + A+  L+      F       +
Sbjct: 9   LKRITLHNFMSHSHTVIDLSPGLTVLTGPNNCGKSAFVSALQILAENTTGDF-------M 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            R G           +G          +E +  +      I+ V    +  
Sbjct: 62  VRHGEKECRVIVETDDGH--------TIEWKRKKKTVSYNIDGVDYHRLRN 104


>gi|66805443|ref|XP_636454.1| structural maintenance of chromosome protein [Dictyostelium
           discoideum AX4]
 gi|74852390|sp|Q54I56|SMC6_DICDI RecName: Full=Structural maintenance of chromosomes protein 6;
           Short=SMC protein 6; Short=SMC-6
 gi|60464832|gb|EAL62951.1| structural maintenance of chromosome protein [Dictyostelium
           discoideum AX4]
          Length = 1185

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 12/117 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63
           I+ + +  F  +   +L F +      G+NG GK+ +L A+      + GF  R +  +D
Sbjct: 149 IESITLENFMCHRHFKLDFCSNVNFIAGENGSGKSAVLIALIVCLGAKAGFTNRGSKLSD 208

Query: 64  VTRIGSPSF-FSTFARVEGME----GLADISIKLETRDDRSV----RCLQINDVVIR 111
           + +  + +   +   R +G E         S+ +E R  R+     +    N   + 
Sbjct: 209 LVKAETNTAVITVKLRNQGQEAFKPEKYGKSVIIERRISRTGSSGYKVKDYNGKTVS 265


>gi|227826498|ref|YP_002828277.1| hypothetical protein M1425_0087 [Sulfolobus islandicus M.14.25]
 gi|229583660|ref|YP_002842161.1| hypothetical protein M1627_0087 [Sulfolobus islandicus M.16.27]
 gi|227458293|gb|ACP36979.1| conserved hypothetical protein [Sulfolobus islandicus M.14.25]
 gi|228018709|gb|ACP54116.1| conserved hypothetical protein [Sulfolobus islandicus M.16.27]
          Length = 495

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I    +S FR+ + + L       + VG NG GKTN+L +I   
Sbjct: 1  MRITEFYVSNFRSLSEVNLKDLGGFNVVVGYNGYGKTNLLSSIFLF 46


>gi|227824341|ref|ZP_03989173.1| chromosome segregation protein SMC [Acidaminococcus sp. D21]
 gi|226904840|gb|EEH90758.1| chromosome segregation protein SMC [Acidaminococcus sp. D21]
          Length = 1186

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 99/303 (32%), Gaps = 48/303 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++K      F+++A  + + F+   T  VG NG GK+NI +AI ++   +     R   
Sbjct: 1   MRLKSFEAHGFKSFADKVNVNFENGITAIVGPNGSGKSNISDAIRWVMGEQSIKYLRGTK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS +             +  +    +    + +  R  RS      IN    R
Sbjct: 61  MEDVIFAGSSARRPLGMADVTLVFDNRDHDLPVDFDEVSIRRRVYRSGESEYAINGKNCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          +D I +    +RR   +             +  + 
Sbjct: 121 LKDIVNLLADTGLGRGSLSIIGQNKIDEILNSRPEDRRTIFEETAG---------IAKYR 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQ---------MAELGVKIN-----IARVEMIN--A 207
             +R +  L        +     + Q         + +   K+       AR E++    
Sbjct: 172 --LRKKEALRKLDDTAGNLLRIHDIQTEISSQLKPLEKAAEKVRTYKELDARYELVRVTQ 229

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L   +    +++     +L   G  + + D+    L+ E   K  + +  ++      +G
Sbjct: 230 LVRRLDHLEKEKGDIEARLEGWGKEERRLDEEAAKLQSEIDAKNKELQAHEASFGAYQVG 289

Query: 268 PHR 270
             +
Sbjct: 290 VRK 292


>gi|110632905|ref|YP_673113.1| ATP-dependent OLD family endonuclease [Mesorhizobium sp. BNC1]
 gi|110283889|gb|ABG61948.1| ATP-dependent endonuclease of the OLD family-like protein
           [Chelativorans sp. BNC1]
          Length = 615

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 122/387 (31%), Gaps = 52/387 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA---- 59
           ++++ L I+ FR  +   + F   HT+ VG N VGK+ + EA+   L P R FRR     
Sbjct: 1   MRVRRLKITNFRGVSQGCIDFS-GHTLLVGGNNVGKSTVCEALDLVLGPERLFRRPVVDE 59

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--- 116
                 R  +        R+E +  L D+S +   R    +R  + +D     +DE    
Sbjct: 60  HDFHCGRYLTEDGAPVEIRIEAI--LVDLSEEATRRFGGHLR--RWDDQAGTFIDERENG 115

Query: 117 ---NKHLRISWLVPSMDRIFSGL-SMERRRFLDRMVFAIDPRHRRRMID----------- 161
                   + W +P    +F G    +   F+    F    +    + +           
Sbjct: 116 LDQADAPGVVWALP---LLFVGRYDRDEDDFVGNTFFDHPTKELDALDEETEIKLGQGRV 172

Query: 162 -FERLMRG-------RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
            F R+ +        R              S +++ +   G        + +  L +L  
Sbjct: 173 PFTRVHKRLCGFVFLRTLRTGSRALSLQRGSLLDSVLKLGGSGAVEMWQDTLGRLQALDP 232

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE-YAKKLFDGRKMDSMSRRTLIGPHRSD 272
              + E    I+  +   +    + +        +A  L      + +       P +  
Sbjct: 233 AIGEIEQLKQIRAEVRSRMGRFVNLAPGDNSTAFFASDLTREHLREVVRLFIAAQPGQHL 292

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           +               TG   +++  +    A L       + I  ++E    L    + 
Sbjct: 293 VPFGRLG---------TGSINLLVFALLTFIAEL---KDKQSVIFAMEEPEIALPPHTQR 340

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            + R V     Q  +T     V +  +
Sbjct: 341 RVTRFVLAEMGQSIVTSHSPYVIEQFD 367


>gi|294659255|ref|XP_461610.2| DEHA2G01606p [Debaryomyces hansenii CBS767]
 gi|199433822|emb|CAG90057.2| DEHA2G01606p [Debaryomyces hansenii]
          Length = 1213

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 97/277 (35%), Gaps = 10/277 (3%)

Query: 93   ETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152
            E    +    +   D + R + EL      ++     D+  S   +++   ++  +    
Sbjct: 918  EKNLSKKAILVARRDEIQRKISELGVLPEEAFQQSIYDKFNSDQLLKKLTNVNDNLSKYS 977

Query: 153  PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
              +++ M  +    + R+ L+           SIE  +  L  + + A  +    ++   
Sbjct: 978  HINKKAMEQYHTFTKQRDELMERRKELEKSRESIENLITSLETQKDEAITQSFKQVAKSF 1037

Query: 213  MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
             E  +K     +   +    D   +++    ++E  +   +    ++ +    +G   S 
Sbjct: 1038 HEIFEKLVPAGVGNLIMQKKDQSLNRNDEEDEDEIMRSSDEHSIDEAQNIDNYVGVSISA 1097

Query: 273  LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
                  D+   I   S G++ +  + + LA           AP  L DEI A+LD   R 
Sbjct: 1098 SFNSKNDEQQRIEQFSGGQKSLCAIALILA-----IQKCDPAPFYLFDEIDANLDTQYRT 1152

Query: 333  ALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRI 367
            A+  ++  +   +Q   T       + L    KF  +
Sbjct: 1153 AVAAMINSLSNKAQFICTT---FRPEMLQVADKFYGV 1186



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
          + IK + I  F+ Y +  ++     QH + VG NG GK+N   AI   LS          
Sbjct: 1  MHIKRIIIQGFKTYKNTTVIDLVSPQHNVVVGRNGSGKSNFFAAIRFVLSDAYTHMTREE 60

Query: 62 AD-VTRIGSPSFFSTFARV 79
             +   GS +  S +  +
Sbjct: 61 RQGLIHEGSGTVMSAYVEI 79


>gi|315231626|ref|YP_004072062.1| hypothetical protein TERMP_01864 [Thermococcus barophilus MP]
 gi|315184654|gb|ADT84839.1| hypothetical protein TERMP_01864 [Thermococcus barophilus MP]
          Length = 865

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
             F ++   ++ F    T+F+G NG GKT+I++AI         R   + D+   G    
Sbjct: 2   KNFLSHKDTKIDFPLGVTVFIGPNGAGKTSIIDAIFVALFNTLPRGDKFDDIIYRGERE- 60

Query: 73  FSTFARVEGMEGLADISIKLETRDDRSV 100
               A++E       I  K+  R  +  
Sbjct: 61  ----AKIELEFEEGGIPYKIVWRRKKGK 84



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/218 (18%), Positives = 79/218 (36%), Gaps = 30/218 (13%)

Query: 151 IDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI---NIARVEM 204
           +  +H   +  FER    +  +N  L +   + +       ++ E    +        + 
Sbjct: 643 VRKKHEELLRQFERTKAELEEKNNSLKKKLEELNEVKEKIKELEEKLNNLEAELDKVKKF 702

Query: 205 INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
           IN L  +   Y +          +   L  KF  +   L   Y +       MD      
Sbjct: 703 INDLERIRAAYHKDG--------VQKLLRKKFAPALSELATNYIE----SFNMDI---TD 747

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
           +      D+ V      + I+  S GE+  V + + LA AR+++       ++++DE + 
Sbjct: 748 IYLSEDFDISVTKNSVEVPISLLSGGEKVAVALALRLAIARVLARRL---SVIIMDEPTT 804

Query: 325 HLDEDKRNALFRIVTDIG------SQIFMTGTDKSVFD 356
           HLDE++R  L  I+           QI +    + + D
Sbjct: 805 HLDEERRRDLVEILGKFFKAENTVPQIIIVTHHRELED 842


>gi|308063229|gb|ADO05116.1| hypothetical protein HPSAT_01845 [Helicobacter pylori Sat464]
          Length = 394

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+N+    +    +  I  G+N  GK+N+LEA+  L  G+ 
Sbjct: 2  IQSVRIKNFKNFKDTTIDGFTKLNIITGENNAGKSNLLEALYCL-VGKS 49


>gi|242809237|ref|XP_002485327.1| structural maintenance of chromosome complex subunit SmcA
           [Talaromyces stipitatus ATCC 10500]
 gi|218715952|gb|EED15374.1| structural maintenance of chromosome complex subunit SmcA
           [Talaromyces stipitatus ATCC 10500]
          Length = 1234

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 71/216 (32%), Gaps = 12/216 (5%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + + +F  Y ++   F +Q  + +G NG GK+ ++ AI   L  G     R    +
Sbjct: 142 AIVRMKLKDFVTYTNVEYHFGSQLNMIIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDAS 201

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHL 120
           +  + G            G     +  ++   + + +     I+      + V +L +  
Sbjct: 202 EFVKHGCKEAIIEIELARGPPFKKNPVVRRVIKFEGNKSTFSIDGRDASRKQVMKLAQKF 261

Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
            I        +P                      A  P+      D +R+   + RLL +
Sbjct: 262 SIQIDNLCQFLPQDKVSEFAALTPVELLYSTQRAAAGPQMIEWHDDLKRIRAEQKRLLAD 321

Query: 176 GYFDSSWCSSI--EAQMAELGVKINIARVEMINALS 209
              D    S++    ++    V+    R ++   + 
Sbjct: 322 NKGDRDLLSNLQNRQELQRADVERVRERAKIKRRIE 357


>gi|118781858|ref|XP_311902.3| AGAP002985-PA [Anopheles gambiae str. PEST]
 gi|27227582|emb|CAD59408.1| SMC6 protein [Anopheles gambiae]
 gi|116129292|gb|EAA07909.3| AGAP002985-PA [Anopheles gambiae str. PEST]
          Length = 1133

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62
           K+  + +  F  +  + + F+ +  + VG NG GK+ IL A++     + G+  R +S  
Sbjct: 86  KVLKIVLKNFMCHRHMVVEFNKRANLLVGKNGSGKSAILAAMTIGLGCNAGQTNRCSSLK 145

Query: 63  DVTRIGSPSFF 73
           D+ + G     
Sbjct: 146 DLIKHGETQAV 156


>gi|297529444|ref|YP_003670719.1| DNA repair protein RecN [Geobacillus sp. C56-T3]
 gi|297252696|gb|ADI26142.1| DNA repair protein RecN [Geobacillus sp. C56-T3]
          Length = 573

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2  LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G+       A +EG+
Sbjct: 57 FGAEK-----AEIEGL 67


>gi|255970708|ref|ZP_05421294.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|312953195|ref|ZP_07772041.1| segregation protein SMC [Enterococcus faecalis TX0102]
 gi|255961726|gb|EET94202.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|310628812|gb|EFQ12095.1| segregation protein SMC [Enterococcus faecalis TX0102]
 gi|315152763|gb|EFT96779.1| segregation protein SMC [Enterococcus faecalis TX0031]
 gi|315159401|gb|EFU03418.1| segregation protein SMC [Enterococcus faecalis TX0312]
 gi|327536217|gb|AEA95051.1| cell division protein Smc [Enterococcus faecalis OG1RF]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALVLATKDVEKYSKSSKELMEELRSQ 384


>gi|188527177|ref|YP_001909864.1| hypothetical protein HPSH_01920 [Helicobacter pylori Shi470]
 gi|188143417|gb|ACD47834.1| hypothetical protein HPSH_01920 [Helicobacter pylori Shi470]
          Length = 396

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+N+    +    +  I  G+N  GK+N+LEA+  L  G+ 
Sbjct: 2  IQSVRIKNFKNFKDTTIDGFTKLNIITGENNAGKSNLLEALYCL-VGKS 49


>gi|166367523|ref|YP_001659796.1| DNA replication and repair protein [Microcystis aeruginosa
          NIES-843]
 gi|166089896|dbj|BAG04604.1| DNA replication and repair protein [Microcystis aeruginosa
          NIES-843]
          Length = 60

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L +  F++Y    L   A  T  +G N  GK+N LEAI  LS
Sbjct: 2  LTSLTLRNFKSYQEATLSLAA-ITFLIGANASGKSNALEAIRLLS 45


>gi|71412992|ref|XP_808655.1| structural maintenance of chromosome (SMC) family protein
           [Trypanosoma cruzi strain CL Brener]
 gi|42740744|gb|AAS44546.1| structural maintenance of chromosome protein 1 [Trypanosoma cruzi]
 gi|70872905|gb|EAN86804.1| structural maintenance of chromosome (SMC) family protein, putative
           [Trypanosoma cruzi]
          Length = 1262

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 20/132 (15%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
            I  + +  F++YA ++ +      T  VG NG GK+N+++A+ F+   S     R    
Sbjct: 4   HIDRVELYNFKSYAGNVTIGPLKDFTCIVGPNGAGKSNLMDALCFVLSPSATTTLRGKDA 63

Query: 62  ADVTRIGSPSFFSTFARV---------------EGMEGLADISIKLETRDDRSVRCL-QI 105
            D+   G+         V                      D  I      D+  R   +I
Sbjct: 64  TDLIHRGAQRKECAVTAVFCHTTPISPAATATTTAAGQGRDTEISFTRAVDQRGRITHKI 123

Query: 106 NDVVIRVVDELN 117
           N   +     L 
Sbjct: 124 NGEPVDDRKYLA 135


>gi|307288869|ref|ZP_07568842.1| segregation protein SMC [Enterococcus faecalis TX0109]
 gi|306500141|gb|EFM69485.1| segregation protein SMC [Enterococcus faecalis TX0109]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|256618146|ref|ZP_05474992.1| chromosome partition protein SMC [Enterococcus faecalis ATCC 4200]
 gi|256597673|gb|EEU16849.1| chromosome partition protein SMC [Enterococcus faecalis ATCC 4200]
 gi|315031784|gb|EFT43716.1| segregation protein SMC [Enterococcus faecalis TX0017]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|254173478|ref|ZP_04880150.1| chromosome segregation protein SMC [Thermococcus sp. AM4]
 gi|214032170|gb|EEB73000.1| chromosome segregation protein SMC [Thermococcus sp. AM4]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 89/283 (31%), Gaps = 36/283 (12%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
           I+ + +  F++Y    + +      T  VG NG GK+NI +A+ F+  G      R    
Sbjct: 4   IEKIEMKGFKSYGNRKVVVPLSKGFTAIVGANGSGKSNIGDAVLFVLGGLSAKAMRATRI 63

Query: 62  ADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-------VIRVV 113
           +D+   G+     + +A V       D    ++  +    R +  +              
Sbjct: 64  SDLIFAGNKAEPPAKYAEVAMYFNNEDRGFPIDEDEVVIKRRVYPDGRSTYWLNGKRATR 123

Query: 114 DELNKHLRISWLVPSMDRIFSGL--------SMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            E+   L  + + P    +            S   RR +   +  I           E+ 
Sbjct: 124 SEILDLLSAAMISPEGYNLVLQGDITKFIKMSATERRLIIDEISGI----AEYDAKKEKA 179

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL-------SSLIMEYVQK 218
           +      L +   + +    +  ++ +   K+   R + +  L        + +   + +
Sbjct: 180 LEE----LKKAEENLARVDLLIKEVKKQLDKLEKERNDALRYLDLKEKVERARVALLLGE 235

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                + L  +   D   ++    ++ E    + +    +   
Sbjct: 236 IKRLELLLEESRNRDSGIEEEIGKVEAELKALVKEIIAREREL 278



 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 20/190 (10%)

Query: 166  MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
            ++ R   + E          +  +  E    +    +E+ +    ++ E   KE+     
Sbjct: 957  LKERIESMEEEIRS---LEPVNMKAIEDFEVVERRYLELSSKREQVLAE---KESIEEFI 1010

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP-----HRSDLIVDYCDK 280
              + G     F ++  A+ + +++ LF        +R  L  P        ++      K
Sbjct: 1011 AEIEGQKREVFMRTLEAIAKNFSE-LFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGK 1069

Query: 281  AITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
             +      S GE+ +  +    A           AP  L DEI AHLD+     +  ++ 
Sbjct: 1070 DVKRIEAMSGGEKALTALAFVFA-----IQRYKPAPFYLFDEIDAHLDDANVKRVADLIK 1124

Query: 340  DIGS--QIFM 347
            +     Q  +
Sbjct: 1125 ESSQSSQFIV 1134


>gi|167745646|ref|ZP_02417773.1| hypothetical protein ANACAC_00338 [Anaerostipes caccae DSM 14662]
 gi|167654958|gb|EDR99087.1| hypothetical protein ANACAC_00338 [Anaerostipes caccae DSM 14662]
          Length = 1186

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 79/219 (36%), Gaps = 26/219 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + ++ F+++A+ +   FD+  T  VG NG GK+N+ +A+   L     +  R A 
Sbjct: 1   MYLKSIEVNGFKSFANKMIFKFDSGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAK 60

Query: 61  YADVTRIGSPS---FFSTFARVEGMEGLADISIKLE------TRDDRSVRCLQINDVVIR 111
             DV   G+       S +  +        + I  E                 +N    R
Sbjct: 61  MEDVIFSGTEMRKPMGSAYVAITMDNSDHSLPIGFEEVTVARRVYRSGESEYLMNGSPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
             D         + K          +D+I SG   +RR   D     +   +++  ++ E
Sbjct: 121 RKDIVELFFDTGIGKEGYSIIGQGQIDQILSGKPEDRRELFDEAAGIVK--YKKNKLETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
           + +      L      +   + +E Q+  L  +   AR 
Sbjct: 179 KSLEAERENLNRV---TDILTELERQVGPLKTQSEKARE 214



 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 73/211 (34%), Gaps = 27/211 (12%)

Query: 157  RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL--IME 214
                ++E            G       + ++ ++AE+  +I       +NA+     ++E
Sbjct: 944  YMWENYELTYHQAKSAA--GEEPRESLTELKKKIAEIKTQIRELGPVNVNAIEDYRDVLE 1001

Query: 215  YVQKENFPHIKL-SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
              +     H  +      L G  D+   A++ ++ +K  D ++M     + L G   + L
Sbjct: 1002 RYEFLKKQHEDIVKAEAHLAGLIDELEAAMRNQFREKFKDIQEMFQKVFQELFGGGYARL 1061

Query: 274  IVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
             +   D               K   +   S GE+ +  + +  A           +P  L
Sbjct: 1062 ELTDDDVLESGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA-----IQNLKPSPFCL 1116

Query: 319  LDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
            LDEI A LD+       + +  +   +Q  +
Sbjct: 1117 LDEIEAALDDSNVARFAQYLHKLTKETQFIV 1147


>gi|78047117|ref|YP_363292.1| recombination protein N [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78035547|emb|CAJ23193.1| recombination protein N [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 589

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 96/278 (34%), Gaps = 38/278 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 37  LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 91

Query: 67  IGSPSF-----FSTFARVEGMEGLADISIKLE--------TRDDRSVRCLQINDVVI--R 111
            G+        F   A   G+  LAD  +  E         R D   R   IN   +   
Sbjct: 92  HGAERAELSAEFQLPAEHPGLRWLADNELDDEAQCQLRRIIRADGGSRA-WINGRPVTSS 150

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168
            + EL   L           + +  S      LD   R     +   R+    ++ L+  
Sbjct: 151 QLAELASKLVEIHGQHEHQALMARHSQL--ALLDAYARNSAQREQV-RQASQRWQALLDE 207

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQKENFPHI 224
           R+ L  +G   S     +E Q+AEL       R ++    I AL                
Sbjct: 208 RDALSAQGDV-SDRIGFLEHQLAEL------EREDLDPAAIAALDVNHRRQAHATALIGA 260

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
             S+   L+G    S   L ++    L    + +    
Sbjct: 261 CDSVAQQLNGDDGASALGLLQDSRHDLSRVAEHEPRLG 298


>gi|257088211|ref|ZP_05582572.1| chromosome partition protein SMC [Enterococcus faecalis D6]
 gi|256996241|gb|EEU83543.1| chromosome partition protein SMC [Enterococcus faecalis D6]
 gi|315026455|gb|EFT38387.1| segregation protein SMC [Enterococcus faecalis TX2137]
 gi|315171218|gb|EFU15235.1| segregation protein SMC [Enterococcus faecalis TX1342]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|256962934|ref|ZP_05567105.1| chromosome partition protein SMC [Enterococcus faecalis HIP11704]
 gi|307273592|ref|ZP_07554820.1| segregation protein SMC [Enterococcus faecalis TX0855]
 gi|256953430|gb|EEU70062.1| chromosome partition protein SMC [Enterococcus faecalis HIP11704]
 gi|306509605|gb|EFM78647.1| segregation protein SMC [Enterococcus faecalis TX0855]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALVLATKDVEKYSKSSKELMEELRSQ 384


>gi|126460242|ref|YP_001056520.1| SMC domain-containing protein [Pyrobaculum calidifontis JCM 11548]
 gi|126249963|gb|ABO09054.1| SMC domain protein [Pyrobaculum calidifontis JCM 11548]
          Length = 795

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 17/162 (10%)

Query: 6   KIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRAS 60
           +I  + +  FR+Y    RL       +  G  G GKT++  AI +   G+      R A 
Sbjct: 3   RISRVELENFRSYRGAHRLELGD-VNLLWGRIGAGKTSVFYAIEYALFGQQLEVKERVAK 61

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-----NDVVIRVVDE 115
            AD+   GS         V+G   L  +  KL  R    +  +            R ++E
Sbjct: 62  LADLIHSGSHEARVALELVDGANVLK-VERKLGKRGAEKLVVVHNGVELRGGEAERRLEE 120

Query: 116 LNK-----HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152
           L       + R+ ++       F   + ++R      +F ID
Sbjct: 121 LLGVDEDLYERLVYISHRTLEGFIYGTSQKRAISVDRLFGID 162



 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 39/321 (12%), Positives = 109/321 (33%), Gaps = 30/321 (9%)

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++ +  +  + +  AR++ ++   +  +K   + ++SVR L   +  I  + E    +  
Sbjct: 475 EILQGDAAEYIAAKARLDELKVEREEVVKKVLQAEKSVRQL---EKRIEKLREFFAKVDK 531

Query: 123 SWLVPSMDR---------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
             +  ++ R         +   +     R     +   +     +  +    +      L
Sbjct: 532 RVISDAVSRYGRAVRIRELRKRVKELEERLRQAGIGGEELEVEVKWREAAAELEKAAARL 591

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH--IKLSLTGF 231
            E Y + S       ++ E    +   R++ +      + E   +        +  L   
Sbjct: 592 AELYKEKSLLEEAAREVGEEAEGL-KKRLDNVLYAYGRLEELKSRLELAKVSARARLVEV 650

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +  +F++ F +L + Y   +     ++                +        ++  S G+
Sbjct: 651 VRSRFNEVFQSLYK-YGDVVKVDAAVEPSRGY------YDFYAISPSGDRYGVSRLSDGQ 703

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTG 349
           +  + + + LA   +     G    L+ DE   ++D + R A  +++T +    Q+ +  
Sbjct: 704 RLSIALSLALALREISQVKLG---FLIFDEPIPYVDVNVRKAFAQLLTSLAGRYQLLVAT 760

Query: 350 TDKSVFDSLNE---TAKFMRI 367
             +   + + E    AK   +
Sbjct: 761 QSREFAEEVREALPNAKLFTV 781


>gi|29377553|ref|NP_816707.1| chromosome partition protein SMC [Enterococcus faecalis V583]
 gi|229548051|ref|ZP_04436776.1| SMC structural maintenance of chromosomes partitioning protein
           [Enterococcus faecalis ATCC 29200]
 gi|256761075|ref|ZP_05501655.1| chromosome partition protein SMC [Enterococcus faecalis T3]
 gi|257091336|ref|ZP_05585697.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257417942|ref|ZP_05594936.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257420450|ref|ZP_05597440.1| chromosome partition protein SMC [Enterococcus faecalis X98]
 gi|307292115|ref|ZP_07571981.1| segregation protein SMC [Enterococcus faecalis TX0411]
 gi|312902146|ref|ZP_07761406.1| segregation protein SMC [Enterococcus faecalis TX0470]
 gi|312905398|ref|ZP_07764512.1| segregation protein SMC [Enterococcus faecalis TX0635]
 gi|28375547|emb|CAD66597.1| SMC protein [Enterococcus faecalis]
 gi|29345020|gb|AAO82777.1| chromosome partition protein SMC [Enterococcus faecalis V583]
 gi|229306840|gb|EEN72836.1| SMC structural maintenance of chromosomes partitioning protein
           [Enterococcus faecalis ATCC 29200]
 gi|256682326|gb|EEU22021.1| chromosome partition protein SMC [Enterococcus faecalis T3]
 gi|257000148|gb|EEU86668.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257159770|gb|EEU89730.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257162274|gb|EEU92234.1| chromosome partition protein SMC [Enterococcus faecalis X98]
 gi|306496768|gb|EFM66319.1| segregation protein SMC [Enterococcus faecalis TX0411]
 gi|310631127|gb|EFQ14410.1| segregation protein SMC [Enterococcus faecalis TX0635]
 gi|311290810|gb|EFQ69366.1| segregation protein SMC [Enterococcus faecalis TX0470]
 gi|315154689|gb|EFT98705.1| segregation protein SMC [Enterococcus faecalis TX0043]
 gi|315161160|gb|EFU05177.1| segregation protein SMC [Enterococcus faecalis TX0645]
 gi|315167204|gb|EFU11221.1| segregation protein SMC [Enterococcus faecalis TX1341]
 gi|315573245|gb|EFU85436.1| segregation protein SMC [Enterococcus faecalis TX0309B]
 gi|315577148|gb|EFU89339.1| segregation protein SMC [Enterococcus faecalis TX0630]
 gi|315581181|gb|EFU93372.1| segregation protein SMC [Enterococcus faecalis TX0309A]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|315172943|gb|EFU16960.1| segregation protein SMC [Enterococcus faecalis TX1346]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 39.9 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E + +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKMAQRQTLKEALALATKNVEKYSKSSKELMEELRSQ 384


>gi|315164396|gb|EFU08413.1| segregation protein SMC [Enterococcus faecalis TX1302]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E + +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKMAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|295687792|ref|YP_003591485.1| chromosome segregation protein SMC [Caulobacter segnis ATCC 21756]
 gi|295429695|gb|ADG08867.1| chromosome segregation protein SMC [Caulobacter segnis ATCC 21756]
          Length = 1147

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           ++ + L +S F+++        +   T  VG NG GK+N+LEA+ ++         R   
Sbjct: 1   MQFQRLRLSGFKSFVEPTEFRIEPGLTGIVGPNGCGKSNLLEALRWVMGANSAKAMRAGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIK-------LETRDDRSVRCLQINDV 108
             DV   GS +            ++  +  A            +   D  S    +IN  
Sbjct: 61  MDDVIFAGSGARPPRNHADVALTIDNADRTAPAQFNDDPVLEVVRRIDRGSGSTYKINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      +       RRR L+
Sbjct: 121 EVRARDVQLLFADASTGANSPALVRQGQISELIGAKPQNRRRILE 165


>gi|227517299|ref|ZP_03947348.1| SMC structural maintenance of chromosomes partitioning protein
           [Enterococcus faecalis TX0104]
 gi|227075306|gb|EEI13269.1| SMC structural maintenance of chromosomes partitioning protein
           [Enterococcus faecalis TX0104]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|241957281|ref|XP_002421360.1| DNA repair protein, putative; growth, DNA repair, interchromosomal
           and sister chromatid recombination protein, putative;
           structural maintenance of chromosomes (SMC) protein,
           putative [Candida dubliniensis CD36]
 gi|223644704|emb|CAX40694.1| DNA repair protein, putative [Candida dubliniensis CD36]
          Length = 1128

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 4/104 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ L +  F  + S  L    Q    +G NG GK+ +L  IS     +     R ++  D
Sbjct: 106 IEKLTLKNFMCHDSFELKLGPQLNFIIGRNGSGKSAVLTGISVGLGAKATDTNRGSTIRD 165

Query: 64  VTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
           + + G S S  +   + EG +         +   +R ++    N
Sbjct: 166 LIKDGKSTSRITVVLKNEGSDAYKPDVFGKKIIIERKLQRYGSN 209


>gi|70984601|ref|XP_747807.1| structural maintenance of chromosome complex subunit SmcA
           [Aspergillus fumigatus Af293]
 gi|66845434|gb|EAL85769.1| structural maintenance of chromosome complex subunit SmcA
           [Aspergillus fumigatus Af293]
 gi|159122589|gb|EDP47710.1| structural maintenance of chromosome complex subunit SmcA
           [Aspergillus fumigatus A1163]
          Length = 1187

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 75/266 (28%), Gaps = 23/266 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + +++F  Y S       +  + +G NG GK+ ++ AI   L  G     R     
Sbjct: 109 AIVRIKVTDFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPG 168

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-------VVDE 115
           +  + G           +G     +  I    + + +     IN                
Sbjct: 169 EFVKHGCREASIEIELAKGPGLRKNPVISRTIKREGNKSSFTINGKQASLAQVKKFAQSF 228

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
             +   +   +P                      A  P         ++L   + +L  +
Sbjct: 229 AIQIDNLCQFLPQDRVSEFAALTPVELLHSTQRAAAGPEMIEWHESLKKLRAEQKKLQLD 288

Query: 176 GYFDSSWCSSIE--AQMAELGVKINIARV------EMINALSSLIMEYVQKENFPHIKLS 227
              D    +++E   +M  + V+    R       EM+  L  +I     +      K  
Sbjct: 289 NQSDKDLLANLENRQEMQRVDVERMRQRAQIKRKIEMLEHLRPVIQYREARNELNQKKTE 348

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFD 253
                  +  +    L+ E A  L  
Sbjct: 349 QR-----RLRKELEDLEAELAPALRA 369


>gi|298490236|ref|YP_003720413.1| hypothetical protein Aazo_0883 ['Nostoc azollae' 0708]
 gi|298232154|gb|ADI63290.1| hypothetical protein Aazo_0883 ['Nostoc azollae' 0708]
          Length = 79

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 28/46 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I+ L++  FR +  L+L       +F+G NG GK++IL+ I+  
Sbjct: 1  MRIEELHLQNFRGFRELKLDLPPDLAVFIGVNGSGKSSILDRIAIF 46


>gi|257888477|ref|ZP_05668130.1| DNA repair protein RecN [Enterococcus faecium 1,141,733]
 gi|257897148|ref|ZP_05676801.1| DNA repair protein RecN [Enterococcus faecium Com12]
 gi|257824531|gb|EEV51463.1| DNA repair protein RecN [Enterococcus faecium 1,141,733]
 gi|257833713|gb|EEV60134.1| DNA repair protein RecN [Enterococcus faecium Com12]
          Length = 561

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D 
Sbjct: 1   MMLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDY 55

Query: 65  TRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            R G+          +   EG +++ ++L    D     ++ +
Sbjct: 56  IRQGAEKCILEGLFELPKQEGFSELMVELGIETDEDNLIVRRD 98


>gi|256960444|ref|ZP_05564615.1| chromosome partition protein SMC [Enterococcus faecalis Merz96]
 gi|293385102|ref|ZP_06630928.1| cell division protein Smc [Enterococcus faecalis R712]
 gi|293389075|ref|ZP_06633547.1| cell division protein Smc [Enterococcus faecalis S613]
 gi|312906715|ref|ZP_07765715.1| segregation protein SMC [Enterococcus faecalis DAPTO 512]
 gi|312910824|ref|ZP_07769660.1| chromosome segregation protein SMC [Enterococcus faecalis DAPTO
           516]
 gi|256950940|gb|EEU67572.1| chromosome partition protein SMC [Enterococcus faecalis Merz96]
 gi|291077579|gb|EFE14943.1| cell division protein Smc [Enterococcus faecalis R712]
 gi|291081543|gb|EFE18506.1| cell division protein Smc [Enterococcus faecalis S613]
 gi|310627363|gb|EFQ10646.1| segregation protein SMC [Enterococcus faecalis DAPTO 512]
 gi|311288847|gb|EFQ67403.1| chromosome segregation protein SMC [Enterococcus faecalis DAPTO
           516]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|221195489|ref|ZP_03568544.1| RecF/RecN/SMC N terminal domain protein [Atopobium rimae ATCC
           49626]
 gi|221184676|gb|EEE17068.1| RecF/RecN/SMC N terminal domain protein [Atopobium rimae ATCC
           49626]
          Length = 472

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 90/286 (31%), Gaps = 45/286 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +KI  L +   +   ++ L       T+  G N  GKT++L+AI++   G         D
Sbjct: 3   VKISSLELENVKRIRAVELEPTKDGLTVIGGKNAQGKTSVLDAIAWALGGDKL---KPDD 59

Query: 64  VTRIGSPSFFSTFARVE--------GMEGLADISIKLETRDDRSVRCLQI---------- 105
             R G  +       ++        G  G   ++  +  +  + +    +          
Sbjct: 60  PNRKGGATPAKLHIELDNGVVVERKGKNGSLHVTDTMGKKAGQQLLNDFVSQLALNIPRF 119

Query: 106 -NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID----PRHRRRMI 160
            N         L + L I         +       R  F DR +   D      H  ++ 
Sbjct: 120 MNGSDADKATALLQTLGI------DAELAKIDGSIRATFQDRQLVGRDAKSKRAHAEKLP 173

Query: 161 DFE----------RLMRGRNRLLTEG--YFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
            ++           L++ +  +LT       +   +   A+ A L  +     VE ++ L
Sbjct: 174 HYDDAPEEPVSASELIQEQQAILTRNGEKLKAKQNAEETARKATLADEAAKTAVERVDEL 233

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
              + E   K N   +            ++S   ++ E  +++   
Sbjct: 234 KRQLKEAEAKANNLRLDAIQAHHDAEVLEKSTAEIELESTEEIEAS 279


>gi|125717534|ref|YP_001034667.1| DNA repair and genetic recombination [Streptococcus sanguinis SK36]
 gi|125497451|gb|ABN44117.1| DNA repair and genetic recombination, putative [Streptococcus
           sanguinis SK36]
 gi|327473377|gb|EGF18797.1| DNA repair protein RecN [Streptococcus sanguinis SK408]
          Length = 552

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA----IDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD    A    +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQVHIAMLDEFGSADFLNLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LILQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|299148668|ref|ZP_07041730.1| hypothetical protein HMPREF9010_02947 [Bacteroides sp. 3_1_23]
 gi|298513429|gb|EFI37316.1| hypothetical protein HMPREF9010_02947 [Bacteroides sp. 3_1_23]
          Length = 732

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 26/43 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI+ ++I  +R   +  + FD + T+ VG N  GKT+ + AI
Sbjct: 1  MKIQSVHIRNYRKLKNCHIDFDEKKTVLVGANNSGKTSAISAI 43


>gi|301108952|ref|XP_002903557.1| structural maintenance of chromosomes protein 6, putative
           [Phytophthora infestans T30-4]
 gi|262097281|gb|EEY55333.1| structural maintenance of chromosomes protein 6, putative
           [Phytophthora infestans T30-4]
          Length = 1119

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRG-FRRASYAD 63
           ++ +    F  +  LR+          G+NG GK+ I+ AI     +  R   R  S  +
Sbjct: 78  VEEIYCENFMCHRKLRVSLCPHINFITGENGSGKSAIIAAIQICLGASARSTHRGKSIKN 137

Query: 64  VTRIGSPS 71
           + R G   
Sbjct: 138 LIRHGHEG 145


>gi|257417225|ref|ZP_05594219.1| chromosome partition protein SMC [Enterococcus faecalis AR01/DG]
 gi|257159053|gb|EEU89013.1| chromosome partition protein SMC [Enterococcus faecalis ARO1/DG]
 gi|315146606|gb|EFT90622.1| segregation protein SMC [Enterococcus faecalis TX4244]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|255974284|ref|ZP_05424870.1| chromosome partition protein SMC [Enterococcus faecalis T2]
 gi|307284871|ref|ZP_07565027.1| segregation protein SMC [Enterococcus faecalis TX0860]
 gi|255967156|gb|EET97778.1| chromosome partition protein SMC [Enterococcus faecalis T2]
 gi|306503130|gb|EFM72387.1| segregation protein SMC [Enterococcus faecalis TX0860]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|300861663|ref|ZP_07107747.1| chromosome segregation protein SMC [Enterococcus faecalis TUSoD
           Ef11]
 gi|300849124|gb|EFK76877.1| chromosome segregation protein SMC [Enterococcus faecalis TUSoD
           Ef11]
 gi|315145469|gb|EFT89485.1| segregation protein SMC [Enterococcus faecalis TX2141]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|167044939|gb|ABZ09605.1| putative RecF/RecN/SMC N terminal domain protein [uncultured
          marine microorganism HF4000_APKG8D23]
          Length = 1302

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +++  + +  F+++A  + +  +   T   G NG GK+N L+AI F+      +  R A+
Sbjct: 1  MRLLRMELENFKSFAGEVTIPLEEGFTAITGPNGSGKSNSLDAIQFVLGPKSTKSIRAAN 60

Query: 61 YADVTRIGSPSF 72
             +   G    
Sbjct: 61 VTQLIFNGGKRG 72


>gi|56479200|ref|YP_160789.1| hypothetical protein ebA6581 [Aromatoleum aromaticum EbN1]
 gi|56315243|emb|CAI09888.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 608

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/384 (15%), Positives = 120/384 (31%), Gaps = 53/384 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRAS--- 60
           +++  L+I  FR  A+  L F   HT+ +G N VGK+ I EA+   L P R  R      
Sbjct: 1   MRVSRLSIENFRGIANAVLHFS-GHTLLIGGNNVGKSTICEALDLVLGPDRLNRTPPVEE 59

Query: 61  -YADVTRIGSPSFFSTF-ARVEGMEGLADISIK------LETRDDRSVRCLQINDVVIRV 112
                    +    +    R+E +       IK      LE       R L   ++    
Sbjct: 60  FDFRNANYLADDGETIVPLRIEAILVDLTDDIKTLCAANLEFWHTSEKRLLTEGEIAAAD 119

Query: 113 VDELNKHLRISWL----VPSMDRIFS--------GLSMERRRFLDRMVFAIDPRHRRRMI 160
             ++   LR+  +    +     +              E +    R+  AI   + R + 
Sbjct: 120 DPQVELCLRLVTVGRYDIDEDQFVARTIYGRTNEEPDEEPKSIPTRVKRAIGFLYLRTIR 179

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
              R +      L  G    +       +M E    +  +  + +  L+  I     +  
Sbjct: 180 TGSRAL-----SLERGTLLDNIL-----RMKEARKGMWESIRKRLAVLNPPIDADATELG 229

Query: 221 --FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                I+  L  ++    +     L   +  +L       +++    +G   +       
Sbjct: 230 PVLDEIEARLAEYIAPSGEGRSTRL---FVSQLTREHLRKTIAFFLTMGQGEA------- 279

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
             A+      TG    +++ +       I++      I  ++E    L    +  +   +
Sbjct: 280 --AVPFQQSGTGTLNTLVLAL----LTFIADLKKDNVIFAMEEPEIALPPHTQRRIANYL 333

Query: 339 TDIGSQIFMTGTDKSVFDSLNETA 362
            +  SQ F+T     V +      
Sbjct: 334 LEETSQCFVTSHSPYVIERFEPEG 357


>gi|46447121|ref|YP_008486.1| putative chromosome segregation SMC protein [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400762|emb|CAF24211.1| putative chromosome segregation SMC protein [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 1179

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 55/268 (20%), Positives = 96/268 (35%), Gaps = 34/268 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++K L    F+++A    L FD   T  VG NG GK+NI +A  ++      +  R   
Sbjct: 1   MRLKKLMAVGFKSFADKTVLNFDRGITCIVGPNGCGKSNIADAFRWVLGEQSAKSMRGHK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+      +F      +  ++G   I    I L  R  RS      IN  ++R
Sbjct: 61  MPDIIFAGTNHRRPLNFAEVSLTLTEVQGALPIDYEEITLTRRLHRSGESEYFINGNLVR 120

Query: 112 VVDELN-----KHLRISWLVPS---MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D           R ++ +     +D++ +   +ERR                      
Sbjct: 121 LKDIQGLFLDSGVGRNAFSIFEQGKLDQVINYTPLERR-----------HIFEEAAGILR 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
            L R R  L      D ++    +  + E+G +I   +V+   AL        Q E+F  
Sbjct: 170 FLQRKREALKRLEQADLNFSRVNDIHL-EVGKQIEALQVQAKKALQ-FKESKTQLESFEK 227

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKL 251
               L      K        +E+  ++L
Sbjct: 228 TSYLLRWEGIEKKKTDVNQKQEKQKERL 255


>gi|315151033|gb|EFT95049.1| segregation protein SMC [Enterococcus faecalis TX0012]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|229547476|ref|ZP_04436201.1| SMC structural maintenance of chromosomes partitioning protein
           [Enterococcus faecalis TX1322]
 gi|256854771|ref|ZP_05560135.1| chromosome partition protein SMC [Enterococcus faecalis T8]
 gi|229307400|gb|EEN73387.1| SMC structural maintenance of chromosomes partitioning protein
           [Enterococcus faecalis TX1322]
 gi|256710331|gb|EEU25375.1| chromosome partition protein SMC [Enterococcus faecalis T8]
 gi|315028378|gb|EFT40310.1| segregation protein SMC [Enterococcus faecalis TX4000]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/213 (18%), Positives = 76/213 (35%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 157 RRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ++++     ++     +N L+      S   S  E  +AE   KI   R E +  L + I
Sbjct: 288 QQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVRYREE-LQTLETAI 346

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E   +       L+L      K+ +S   L EE   +
Sbjct: 347 AEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|149914538|ref|ZP_01903068.1| DNA repair protein RecN [Roseobacter sp. AzwK-3b]
 gi|149811331|gb|EDM71166.1| DNA repair protein RecN [Roseobacter sp. AzwK-3b]
          Length = 549

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 90/291 (30%), Gaps = 37/291 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRALDIRDILIIDHLELAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--V 112
            G+                     ++      D  I          +   +ND      V
Sbjct: 57  QGADQGEVVAEFDLPKDHPARAVLLDAGLPEEDQLILRRVNTSDGRKTAWVNDRRCSGEV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR-----RRMIDFERLMR 167
           +  L+  L           +        R  LD      D + R     R + +  +++ 
Sbjct: 117 LRRLSDTLVELHGQHDDRGLL--DPKGHRALLDAFGALNDLKSRTRTAWRAVAEAGKVLS 174

Query: 168 GRNRLLTEGYFDSSW-------CSSIEAQMAELGVKINIARV-EMINALSSLIMEYVQKE 219
                L E   +  +         +++ Q  E        R+ +    +   I+      
Sbjct: 175 RAEAALQEVRTEEEFLRHAVTELDTLDPQPGEDDALDARRRLMQQAERIREDILRAQAAL 234

Query: 220 NFPHIKLSLTG---FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
            F   + +      +L+G  D++   L E  A       ++D  ++     
Sbjct: 235 GFEGAEGAAGDALRWLEGVADRAEGQLDEPIAALSRAMVELDEAAQGVTRC 285


>gi|108863044|gb|ABA99633.2| RecF/RecN/SMC N terminal domain containing protein, expressed
          [Oryza sativa Japonica Group]
          Length = 573

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          +I  L +  F++Y  +  +      T  +G NG GK+N+++AISF+   R    R A   
Sbjct: 15 RIHRLEVENFKSYKGTQTIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRSAHLRGAQLK 74

Query: 63 DVT 65
          D+ 
Sbjct: 75 DLI 77


>gi|83814851|ref|YP_445024.1| chromosome segregation protein SMC [Salinibacter ruber DSM 13855]
 gi|83756245|gb|ABC44358.1| chromosome segregation protein SMC [Salinibacter ruber DSM 13855]
          Length = 1186

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 30/217 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           + +  L +  F+++A    L FD   T  VG NG GK+NI++AI   +   R    R   
Sbjct: 1   MYLSKLELQGFKSFADETTLTFDPGVTTIVGPNGCGKSNIVDAIRWVIGEQRPTVLRSEK 60

Query: 61  YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI--------NDVVIR 111
             ++   G +       A VE      D  +  E  +    R L          N    R
Sbjct: 61  MENLIFNGTADRRPLGMAEVELTIENTDGVLPTEYAEVTIGRRLFRDGTSEYLMNGTTCR 120

Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D  +  +       +         D + SG + +RRR  +             +  ++
Sbjct: 121 LKDITDLFMDTGMAADAYSVIELKMVDELVSGSTEDRRRMFEE---------AAGITRYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
              R   R L     D      +  +++    ++   
Sbjct: 172 MRRRQALRKLDGTQSDLERIRDLTDEVSTQVERLERQ 208


>gi|55378409|ref|YP_136259.1| chromosome segregation protein [Haloarcula marismortui ATCC 43049]
 gi|55231134|gb|AAV46553.1| chromosome segregation protein [Haloarcula marismortui ATCC 43049]
          Length = 1195

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK L +  F+++    R+ F    T   G NG GK+NI++AI F   L+   G R   
Sbjct: 1   MHIKELVLDNFKSFGRKTRIPFYEDFTTISGPNGSGKSNIIDAILFALGLARTSGIRAEK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
             D+    +P      A  +G E  A + + L   D    R   +N
Sbjct: 61  LTDLIY--NPGHADEDAEYDG-ERQASVEVILANDDRTLSRSQVVN 103


>gi|283779090|ref|YP_003369845.1| chromosome segregation protein SMC [Pirellula staleyi DSM 6068]
 gi|283437543|gb|ADB15985.1| chromosome segregation protein SMC [Pirellula staleyi DSM 6068]
          Length = 1215

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 121/369 (32%), Gaps = 62/369 (16%)

Query: 7   IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62
           +K L +  F+++A      F A  T+ VG NG GK+NI++ I   L     +  R    A
Sbjct: 2   LKALELHGFKSFADKTRFEFPAGITVIVGPNGSGKSNIVDGIKWVLGEQSAKSLRGKDMA 61

Query: 63  DVTRIG------SPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIRV 112
           DV   G      +          +  EG   I    + +  R  RS      IN    R+
Sbjct: 62  DVIFKGSGSGRKAAQAAEATLVFDNSEGRLPIDAPEVHITRRVFRSGEGEYLINRQPARL 121

Query: 113 VD--ELNKHLRISWLVPSM------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
            D  ++ +   +     SM      DR+    + +RR   +             +  F+ 
Sbjct: 122 KDIRDMVRGTGVGVDAYSMIEQGKVDRLLQASAKDRRAIFEE---------AAGISRFKA 172

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
                 R L     D +       +++++  +++ AR++ +   ++    Y +       
Sbjct: 173 KKIEAQRRLER--VDQNLL-----RLSDIVEEVD-ARLKTVRNQAAKARRYRE------- 217

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAIT 283
                     +  Q      +   +KL +  +    ++       + +L+V   + + I 
Sbjct: 218 -------YSTRLQQLRTQTAQVDWRKLAEQLEA-ITAKVATFTSEKEELVVRVQELEQIV 269

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
               S  +       +  A A+  S     A      E +A               +   
Sbjct: 270 AGSASQSQN--AATALRTAEAKQASLREQIAQ----QESAADFHRQTSKQQAEAAREQQQ 323

Query: 344 QIFMTGTDK 352
           Q  +T TD+
Sbjct: 324 Q-LVTMTDR 331


>gi|227875614|ref|ZP_03993753.1| possible DNA repair protein RecN [Mobiluncus mulieris ATCC 35243]
 gi|227843799|gb|EEJ53969.1| possible DNA repair protein RecN [Mobiluncus mulieris ATCC 35243]
          Length = 578

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 92/306 (30%), Gaps = 37/306 (12%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           T  + I+ L I      +   L F    T+  G+ G GKT +L ++++L  G   R +  
Sbjct: 3   TPEM-IESLRIENLGTISHAELGFSPGFTVITGETGAGKTMLLTSLNWL-LGAQPRAS-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL- 120
             +   GS S       +      A +       +D  V   +I     R    L     
Sbjct: 59  --LVAAGSESAVVEGTFLVDASAAAVVMEAGGVVEDGVVEAARIVPAQSRSKAHLGGRTV 116

Query: 121 --RISWLVPSMDRIFSGLSMERRRFLDRMVFAID-------PRHRRRMIDFERLMRGRNR 171
                    +      G + + R  L       +         H+  +  + +       
Sbjct: 117 PAATLGTFGADLVSVHGQATQSR--LRGEKAQREAVDEFGGKTHQAALQTYAKA------ 168

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTG 230
              E    +      E        +    R E++  LS        ++  F  +  +++ 
Sbjct: 169 -WEEWGAATKDLEIWEENF-----ETRQRRREVLEHLSEEFQALAPEDGEFEELTATISR 222

Query: 231 FLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
             + +  +        AL E+   ++     +D   R       +   + D  D   + +
Sbjct: 223 LSNVENLRENATAALVALDEDSEMQVGANALVDIALRAMEKVTQQDGSLADLADMVASAS 282

Query: 286 HGSTGE 291
           + S GE
Sbjct: 283 Y-SLGE 287


>gi|66045061|ref|YP_234902.1| SMC protein, N-terminal:structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255768|gb|AAY36864.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Pseudomonas
           syringae pv. syringae B728a]
          Length = 1162

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++      L G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNDLVGQREAVISNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|294506894|ref|YP_003570952.1| Chromosome segregation protein SMC [Salinibacter ruber M8]
 gi|294343222|emb|CBH24000.1| Chromosome segregation protein SMC [Salinibacter ruber M8]
          Length = 1186

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 30/217 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           + +  L +  F+++A    L FD   T  VG NG GK+NI++AI   +   R    R   
Sbjct: 1   MYLSKLELQGFKSFADETTLTFDPGVTTIVGPNGCGKSNIVDAIRWVIGEQRPTVLRSEK 60

Query: 61  YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI--------NDVVIR 111
             ++   G +       A VE      D  +  E  +    R L          N    R
Sbjct: 61  MENLIFNGTADRRPLGMAEVELTIENTDGVLPTEYAEVTIGRRLFRDGTSEYLMNGTTCR 120

Query: 112 VVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D  +  +       +         D + SG + +RRR  +             +  ++
Sbjct: 121 LKDITDLFMDTGMAADAYSVIELKMVDELVSGSTEDRRRMFEE---------AAGITRYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
              R   R L     D      +  +++    ++   
Sbjct: 172 MRRRQALRKLDGTQSDLERIRDLTDEVSTQVERLERQ 208


>gi|68483159|ref|XP_714514.1| potential nuclear condensin complex SMC ATPase [Candida albicans
           SC5314]
 gi|68483260|ref|XP_714465.1| potential nuclear condensin complex SMC ATPase [Candida albicans
           SC5314]
 gi|46436033|gb|EAK95403.1| potential nuclear condensin complex SMC ATPase [Candida albicans
           SC5314]
 gi|46436089|gb|EAK95458.1| potential nuclear condensin complex SMC ATPase [Candida albicans
           SC5314]
          Length = 1171

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K+  L I  F++YA   +   +DAQ     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVDELIIDGFKSYAVRTVISNWDAQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E    IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFNNSEVSKSPIGFENCPTISVTRQIILGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    LN    +   + + + +    
Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148


>gi|330836477|ref|YP_004411118.1| SMC domain-containing protein [Spirochaeta coccoides DSM 17374]
 gi|329748380|gb|AEC01736.1| SMC domain protein [Spirochaeta coccoides DSM 17374]
          Length = 948

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 79/242 (32%), Gaps = 47/242 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L +  F+++A   +L F    T  +G NG GK+NI+++I   L     +  R + 
Sbjct: 1   MFLKTLEMIGFKSFADKTKLDFADGITCLLGPNGCGKSNIVDSIKWVLGEQSTKALRASR 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVI- 110
             DV   G+ +     F      +   EG   I    +++  R  R+      IN     
Sbjct: 61  MDDVIFNGTDNRKPMGFAEVSLTISNEEGHLAIDAPEVEIRRRVYRNGNAEYYINRSPAL 120

Query: 111 -RVVDEL----------------NKHLRISWLVPSMDRIFSGLSMERRRFLDRM------ 147
            + + EL                 K  +I    P   R     +    RF  +M      
Sbjct: 121 LKNIKELFLDTGVGKSAYSILEQGKIDQILSHKPEDRRYIFEEAAGISRFKTQMNEAQRK 180

Query: 148 -------VFAIDPRHRRRMIDF--ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198
                  +  +D         +   +    R  +  E     +     + Q++ L   + 
Sbjct: 181 LERTMENLEQVDAIFTEAKRTYTLRKGQAERVVIFKELEKQKTLLEV-DTQLSTLKSYLL 239

Query: 199 IA 200
           + 
Sbjct: 240 LK 241


>gi|325697439|gb|EGD39325.1| RecF/RecN/SMC N domain protein [Streptococcus sanguinis SK160]
          Length = 899

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +KIK + +  F+N+    +  F    T  VG NG GKT I +AI     G
Sbjct: 1  MKIKKILLYNFKNFRQKTIIDFSKDITFLVGPNGFGKTTIFDAIELGLTG 50


>gi|291559018|emb|CBL37818.1| condensin subunit Smc [butyrate-producing bacterium SSC/2]
          Length = 1185

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 82/220 (37%), Gaps = 28/220 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + ++ F+++A  +   F+   T  VG NG GK+N+ +A+ ++      +  R + 
Sbjct: 1   MYLKSIEVNGFKSFAHKMIFKFEHGITGIVGPNGSGKSNVADAVRWVLGEQRAKQLRGSR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +    I  +  T   R  R       IN    R
Sbjct: 61  MEDVIFSGTELRKPMGSAYVAITLDNSDHSLPIQFEEVTVARRVYRSGESEYLINGSACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
             D         + K          +++I SG   ERR   D     +   +++  ++ +
Sbjct: 121 RKDIVELFFDTGIGKEGYSIIGQGQIEQILSGKPEERRELFDEAAGIVK--YKKNKLETQ 178

Query: 164 RLMR-GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
           + +   R  L+      +   + +E Q+  L  +   AR 
Sbjct: 179 KSLEIERENLVRV----TDILTELERQVGPLKKQSERARE 214


>gi|218263846|ref|ZP_03477815.1| hypothetical protein PRABACTJOHN_03505 [Parabacteroides johnsonii
          DSM 18315]
 gi|218222445|gb|EEC95095.1| hypothetical protein PRABACTJOHN_03505 [Parabacteroides johnsonii
          DSM 18315]
          Length = 239

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 26/43 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++I  ++I  FR   + R+ F+   TIFVG N  GKT+ + AI
Sbjct: 1  MRIDHIHIRNFRKLKNCRIDFNKDQTIFVGANNSGKTSAMSAI 43


>gi|47086417|ref|NP_997975.1| structural maintenance of chromosomes 1A, like [Danio rerio]
 gi|44890312|gb|AAH66674.1| Structural maintenance of chromosomes 1A [Danio rerio]
          Length = 285

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 21/177 (11%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKTLKD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F +   + +G + L+   I +    E R +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVTMVYQQDGGQELSFSRIIIGSSSEYRINNKVVGLSDYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +  L K         +++ I      ER    + +      R      +++R  + 
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFEEI-----SRSGELAQEYDRCKKE 174


>gi|12045154|ref|NP_072965.1| chromosome segregation protein SMC [Mycoplasma genitalium G37]
 gi|1709512|sp|P47540|P115_MYCGE RecName: Full=Protein P115 homolog
 gi|1045996|gb|AAC71520.1| chromosome segregation protein SMC [Mycoplasma genitalium G37]
 gi|166079082|gb|ABY79700.1| chromosome segregation protein SMC [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 982

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 61/185 (32%), Gaps = 26/185 (14%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62
           +K      F++YA  + + F    T  VG NG GK+N+++A+ ++   R     R  S  
Sbjct: 4   LKRFRAYGFKSYADEITIDFTHSMTGIVGPNGSGKSNVVDALKWVLGERSMKHLRSKSGD 63

Query: 63  DVTRIGSPS-FFSTFARVE---------GMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           D+   GS     S  A +E           +   +IS+              IN      
Sbjct: 64  DMIFFGSKDKPASKLAEIELTFDNSNRLLHDSRKEISVMRRVYRGSGQSEYFINSNPA-T 122

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRMID 161
           + E++       L      I S             ERR+  +    +     R    +  
Sbjct: 123 LKEISGIFADIGLEKGSLGIISQGSVSWFVEAKPEERRKIFEDASGIGRYTKRKEEVVNQ 182

Query: 162 FERLM 166
             R +
Sbjct: 183 LNRTL 187


>gi|330834081|ref|YP_004408809.1| ATPase-like protein [Metallosphaera cuprina Ar-4]
 gi|329566220|gb|AEB94325.1| ATPase-like protein [Metallosphaera cuprina Ar-4]
          Length = 494

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +++     S F++  S+ L       + VG NG GKTN+L +I  
Sbjct: 1  MRLTEFYTSNFKSLESVELREMGGFNVIVGFNGYGKTNLLTSIYL 45


>gi|325694098|gb|EGD36016.1| DNA repair protein RecN [Streptococcus sanguinis SK150]
          Length = 552

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 74/226 (32%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD         +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLNLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        S    +E QMAE+            ++  R  ++N
Sbjct: 176 LTLQKNQQEHKSRIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|209524198|ref|ZP_03272748.1| SMC domain protein [Arthrospira maxima CS-328]
 gi|209495289|gb|EDZ95594.1| SMC domain protein [Arthrospira maxima CS-328]
          Length = 435

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  + + +F++Y S  L    + T+ +G N  GK+N++EA+  LS  
Sbjct: 2  ITEIELKDFKSYKSATLHLG-RLTVLIGANASGKSNVIEALRLLSRL 47


>gi|328876060|gb|EGG24424.1| structural maintenance of chromosome protein [Dictyostelium
           fasciculatum]
          Length = 1957

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 15/111 (13%)

Query: 7   IKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAISF-------LSPGRGF 56
           IK + I  F++Y  L L    F     +  G NG GK+N+  AI F       LS G+  
Sbjct: 545 IKLIKIEGFKSYKHLDLSSTSFSPGFNVITGRNGSGKSNLFAAIRFLLGDWSNLSLGKEE 604

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           R                     VE +   +D    ++ ++    R + +N 
Sbjct: 605 RSKLL-----HSFGGTAVHSGYVEVLFDNSDGRFPIQKKEFTLKRSVFVNK 650



 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 281  AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
             +T+   S G++ +V + +  A        T  AP  LLDEI A LD   R ++ R++  
Sbjct: 1632 PLTMHQLSGGQKTLVALALIFAL-----QRTDPAPFYLLDEIDAALDHQYRISVSRLIRK 1686

Query: 341  --IGSQIFMTG 349
                +Q   T 
Sbjct: 1687 HSKFTQFIATT 1697


>gi|312213375|emb|CBX93457.1| similar to structural maintenance of chromosomes protein 5
           [Leptosphaeria maculans]
          Length = 1143

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 71/214 (33%), Gaps = 14/214 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-- 64
           +  + +  F  Y +   +      + +G NG GK+ ++ AI               D+  
Sbjct: 80  LIRVKLKNFVTYTAAEFLLGPSLNMIIGPNGTGKSTLVCAICLGLGWGSEHLGRAKDLGA 139

Query: 65  -TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--IRVVDELNKHLR 121
             + G+          +G     +  I+   R + +     +N       VV  + K L 
Sbjct: 140 FVKHGATEAEIEIELAKGPGMKRNPVIQRLIRKEDNKSFFTLNGKRTAQNVVTAMCKGLS 199

Query: 122 ISW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR-GRNRLLTE 175
           I        +P    +      E  R  +    A  P +     D  +++R     L T+
Sbjct: 200 IQIDNLCQFLPQDRVVEFSRLSEVDRLRETQ-RAAAPAYMVDWHDQLKVLRAEEKALETK 258

Query: 176 GYFDSSWCSSIEAQ--MAELGVKINIARVEMINA 207
            + + +  S +EAQ       V+    R E++  
Sbjct: 259 QHNEKTHLSKLEAQQNATRDDVERWHQREELLQK 292


>gi|257879358|ref|ZP_05659011.1| DNA repair protein RecN [Enterococcus faecium 1,230,933]
 gi|257881776|ref|ZP_05661429.1| DNA repair protein RecN [Enterococcus faecium 1,231,502]
 gi|257885170|ref|ZP_05664823.1| DNA repair protein RecN [Enterococcus faecium 1,231,501]
 gi|257890184|ref|ZP_05669837.1| DNA repair protein RecN [Enterococcus faecium 1,231,410]
 gi|257893512|ref|ZP_05673165.1| DNA repair protein RecN [Enterococcus faecium 1,231,408]
 gi|260558800|ref|ZP_05830989.1| DNA repair protein RecN [Enterococcus faecium C68]
 gi|261206510|ref|ZP_05921210.1| DNA repair protein RecN [Enterococcus faecium TC 6]
 gi|257813586|gb|EEV42344.1| DNA repair protein RecN [Enterococcus faecium 1,230,933]
 gi|257817434|gb|EEV44762.1| DNA repair protein RecN [Enterococcus faecium 1,231,502]
 gi|257821022|gb|EEV48156.1| DNA repair protein RecN [Enterococcus faecium 1,231,501]
 gi|257826544|gb|EEV53170.1| DNA repair protein RecN [Enterococcus faecium 1,231,410]
 gi|257829891|gb|EEV56498.1| DNA repair protein RecN [Enterococcus faecium 1,231,408]
 gi|260075259|gb|EEW63572.1| DNA repair protein RecN [Enterococcus faecium C68]
 gi|260079220|gb|EEW66911.1| DNA repair protein RecN [Enterococcus faecium TC 6]
          Length = 561

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D 
Sbjct: 1   MMLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDY 55

Query: 65  TRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            R G+          +   EG +++ ++L    D     ++ +
Sbjct: 56  IRQGAEKCVLEGLFELPKQEGFSELMVELGIETDEDNLIVRRD 98


>gi|218778640|ref|YP_002429958.1| chromosome segregation protein SMC [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760024|gb|ACL02490.1| chromosome segregation protein SMC [Desulfatibacillum alkenivorans
           AK-01]
          Length = 1191

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +K+K L +  F+++     + F    +  VG NG GK+NI++AI +++     R  R  S
Sbjct: 1   MKLKQLELCGFKSFPDKTTIPFPGGVSAVVGPNGCGKSNIVDAIQWVTGEQRARQLRGKS 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRD-----------DRSVRCLQINDV 108
             DV   GS S      A V       + S   E RD               R   IN  
Sbjct: 61  MEDVIFSGSKSRPPVNMAEVSITFANDNGSCPEEYRDFSEIMVTRRLFRSGERGYFINKQ 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
             R+ D         +           ++  I      ERR F++
Sbjct: 121 PCRLKDIQNLLMGSGIGAGTYAVIQQGNLGAITEAGPDERRIFIE 165


>gi|327439763|dbj|BAK16128.1| ATPase [Solibacillus silvestris StLB046]
          Length = 563

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 18/233 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I  F     L + F    T+  G+ G GK+ I++A++ L+ GRG       +  R
Sbjct: 2   LRELSIRNFAIIDDLTVSFFGGLTVLTGETGAGKSIIIDAVNILAGGRG-----STEFIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G                   I  KLE     S     I    +    +    +    + 
Sbjct: 57  HGEKKA-ELGGLFHVDNSQHPIFAKLEEHGIESEEDTIILRRDLHDSGKSVCRVNGKLVP 115

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW--CS 184
            S+ R   G  ++     +      +  H   +  +            +  +D ++    
Sbjct: 116 LSVLRDIGGSLIDIHGQHENQELMDEKFHINLLDHYAHNKLQ----PVKARYDEAFEAYR 171

Query: 185 SIEAQMAELG--VKINIARVEM----INALSSLIMEYVQKENFPHIKLSLTGF 231
            ++ ++AEL    +    R+++    I  L    ++  ++E     +L L  F
Sbjct: 172 QLKREVAELSMDEQRMAQRIDLYQFQIQELEQAGLKVDEEEALDEERLRLMNF 224


>gi|327285298|ref|XP_003227371.1| PREDICTED: structural maintenance of chromosomes protein 2-like
           [Anolis carolinensis]
          Length = 1202

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA       FD       G NG GK+NIL++I FL   +     R +
Sbjct: 1   MYIKSIVLEGFKSYAQRTEVNDFDPLFNAITGLNGSGKSNILDSICFLLGITNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLQDLVYKNGQAGITKATVSITFDNFDKKQSPLGFENHDEITVTRQVVIGGRNKYL-ING 119

Query: 108 VVI 110
           V  
Sbjct: 120 VNA 122


>gi|320323493|gb|EFW79578.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329464|gb|EFW85456.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 1162

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++      L G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEIGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|300707494|ref|XP_002995952.1| hypothetical protein NCER_101026 [Nosema ceranae BRL01]
 gi|239605199|gb|EEQ82281.1| hypothetical protein NCER_101026 [Nosema ceranae BRL01]
          Length = 1045

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  L ++ F+ + S R+ F       +G NG GK+ I  A+S +  G      +  +  +
Sbjct: 12  IISLYLTNFQTFKSSRIRFSPSLNFIIGPNGSGKSTISNALSLIFGGTPKTIGKTKNLKE 71

Query: 64  VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
             R G+           EG        I +      +     +N  +++ 
Sbjct: 72  YIRFGAHDCKIEAEVFYEGEIYKIGRGISI------ANNFWYVNGEIVKK 115


>gi|238883729|gb|EEQ47367.1| structural maintenance of chromosome 2 [Candida albicans WO-1]
          Length = 1171

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K+  L I  F++YA   +   +DAQ     G NG GK+NIL+AI F+         R +
Sbjct: 1   MKVDELIIDGFKSYAVRTVISNWDAQFNAITGLNGSGKSNILDAICFVLGIASMSTVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E    IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFNNSEVSKSPIGFENCPTISVTRQIILGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +    LN    +   + + + +    
Sbjct: 120 HKAQQQTVLNLFQSVQLNINNPNFLIMQG 148


>gi|227530533|ref|ZP_03960582.1| DNA repair protein RecN [Lactobacillus vaginalis ATCC 49540]
 gi|227349539|gb|EEJ39830.1| DNA repair protein RecN [Lactobacillus vaginalis ATCC 49540]
          Length = 560

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 67/196 (34%), Gaps = 19/196 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L F  Q T+  G+ G GK+ I++A+  L+ GRG       +  R
Sbjct: 2   LQELTIDNLAIIKHLSLDFSDQMTVLTGETGAGKSIIIDAVGLLAGGRG-----SQEYIR 56

Query: 67  IGSP--SFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+   S    FA  +           G++    I I       R    +++N  +I   
Sbjct: 57  RGADKLSLQGQFALPQDPEFNHLLDSLGIDHEDGILIISREIYRRGRNVIRVNGQLINTA 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRNRL 172
                  R+  +    +             LD+       +   R  D ++  ++ +  +
Sbjct: 117 TLRQIGSRLVDIQGQNEHQLLLQPEMHLGMLDQFAHNEVHKLLTRYQDEYQNYVKLKAAV 176

Query: 173 LTEGYFDSSWCSSIEA 188
             +   +  W   ++ 
Sbjct: 177 SKKQNNEQQWAQRLDM 192


>gi|261854789|ref|YP_003262072.1| chromosome segregation protein SMC [Halothiobacillus neapolitanus
           c2]
 gi|261835258|gb|ACX95025.1| chromosome segregation protein SMC [Halothiobacillus neapolitanus
           c2]
          Length = 1167

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L ++ F+++A+   ++  A+    VG NG GK+N+++AI ++   S  +  R  S
Sbjct: 1   MRLTRLYLAGFKSFAAPTEILLPAERVAIVGPNGCGKSNLIDAIRWVLGESSAKQLRGQS 60

Query: 61  YADVTRIGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   GS             SF ++  R+ G  G  D  +   +          IN  
Sbjct: 61  LDDVIFAGSGQRPAASQAVVELSFDNSARRLSGPFGAYDQIVICRSLGRDGQSRYSINQT 120

Query: 109 VIRVVD 114
            +R  D
Sbjct: 121 RVRRRD 126


>gi|187921121|ref|YP_001890153.1| OLD family ATP-dependent endonuclease [Burkholderia phytofirmans
           PsJN]
 gi|187719559|gb|ACD20782.1| ATP-dependent endonuclease, OLD family [Burkholderia phytofirmans
           PsJN]
          Length = 762

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 13/119 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L I  FR    + +      +IFVG N  GKT+   A+     G+G         
Sbjct: 1   MHLQKLGIRNFRRLRDVVIDLAPDISIFVGANNSGKTSAGHALQLF-TGKGRFTLHD--- 56

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
               +  +    A  EG+ G    ++ ++         L I+   I  V +L   L   
Sbjct: 57  --FSAELWPQFVAFGEGVAGATLPTMSIDI-------WLHIDGTDIHRVIDLLPSLAWQ 106


>gi|240274239|gb|EER37756.1| DNA repair protein RAD18 [Ajellomyces capsulatus H143]
          Length = 1148

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 95/335 (28%), Gaps = 68/335 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++    G+     R  S   
Sbjct: 121 IERVDCYNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTALTLCLGGKASVTNRGQSLKS 180

Query: 64  VTRIGSPSFFSTFARVEGMEGLAD----------ISIKLETRDDRSVRCL----QINDVV 109
             + G  S  +   R++     A           I            +      ++    
Sbjct: 181 FIKEGKDSA-TIVVRIKNQGDSAYNPNEFGNSIIIERHFSRNGSSGFKIKSSSGRVVSTK 239

Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR--- 156
              +D +  +  +    P        +   + S    E+ +F      +  +D  +R   
Sbjct: 240 KSELDSITDYFALQIDNPMNVLSQDMARQFLSSSSPSEKYKFFVKGVQLEQLDQDYRLLE 299

Query: 157 ------------------------------RRMIDFERLMRGRNRLLT------EGYFDS 180
                                           + D    MR R R L       +     
Sbjct: 300 ESIDQTEAKLSIHLDQIKDLETNRNNARAKLALSDKNETMRARVRNLRAQMAWVQVEEQE 359

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               + +AQ+AE   KI     E+  A         +        L+    L+ + D+  
Sbjct: 360 KNRDAYDAQLAEATRKIADLESEVAKADELYQSADREYGIAAEAVLAAKSELEAQADRGK 419

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
            A KE   + + + R++ +  R        ++  +
Sbjct: 420 VA-KESMNEIVKERRELQATQRTIRECLKTAESAI 453


>gi|87310422|ref|ZP_01092552.1| chromosome partition protein Smc [Blastopirellula marina DSM 3645]
 gi|87286921|gb|EAQ78825.1| chromosome partition protein Smc [Blastopirellula marina DSM 3645]
          Length = 1209

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 15/123 (12%)

Query: 7   IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K L +  F+++A      F    T+ VG NG GK+NI++AI +       +  R    A
Sbjct: 2   LKALELVGFKSFADKTRFEFPPGITVVVGPNGSGKSNIVDAIKWALGEQSAKSLRGKEMA 61

Query: 63  DVTRIGSPSFFS----------TFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
           DV   G+ S              F   EG   +    + +  R  RS      IN    R
Sbjct: 62  DVIFKGAASGARKAMNSAEATIVFDNSEGQLAIDSPEVHVSRRVYRSGEAEYLINRHPCR 121

Query: 112 VVD 114
           + D
Sbjct: 122 LRD 124


>gi|313240570|emb|CBY32899.1| unnamed protein product [Oikopleura dioica]
          Length = 658

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 89/287 (31%), Gaps = 39/287 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++Y     +  FD       G NG GK+NIL++I FL   S     R  
Sbjct: 1   MFIKSIELDGFKSYARRTEIKDFDPLFNAITGLNGSGKSNILDSICFLLGISQLTQVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+  + G          +            G      I +  +   +   +   IN 
Sbjct: 61  SLNDLVYKNGQAGITRATVSITFDNRDKEKSPIGYHDSDKIVVTRQINVNGKNK-YMING 119

Query: 108 VVIR--VVDELNKHLRISWLVPSMD-------RIFSGLSMERRRFLDRMVFAIDPRHRRR 158
           V  +   V +  + + ++   P          ++ +   ME    ++         +  +
Sbjct: 120 VHAQNNRVADFFQSVGMNINNPHFLIMQGRVTKVMNMKPMEILSMIEEATGT--RMYESK 177

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
                R +        +    +     +   +     K+   R   +     L  E    
Sbjct: 178 KDSCTRAIE------KKQLKYNELTKILNEDLHPQIEKLKGDRESYM-RYQQLTREIEHS 230

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
           + F    ++       +  QS    K     +L + R+ +S  + T 
Sbjct: 231 QKF---VIAFKYHSLDEKLQSADEAKARLEAELQNAREEESRLKETQ 274


>gi|257899146|ref|ZP_05678799.1| DNA repair protein RecN [Enterococcus faecium Com15]
 gi|257837058|gb|EEV62132.1| DNA repair protein RecN [Enterococcus faecium Com15]
          Length = 561

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D 
Sbjct: 1   MMLQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDY 55

Query: 65  TRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            R G+          +   EG +++ ++L    D     ++ +
Sbjct: 56  IRQGAEKCILEGLFELPKQEGFSELMVELGIETDEDNLIVRRD 98


>gi|289579068|ref|YP_003477695.1| SMC domain protein [Thermoanaerobacter italicus Ab9]
 gi|289528781|gb|ADD03133.1| SMC domain protein [Thermoanaerobacter italicus Ab9]
          Length = 658

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + +  + I  FR+   + + F     I VG N  GK+NI++AI  
Sbjct: 1  MYLHRVVIKNFRSIEYVDITFAKGKNIIVGKNNCGKSNIIKAIDL 45


>gi|220907751|ref|YP_002483062.1| SMC domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219864362|gb|ACL44701.1| SMC domain protein [Cyanothece sp. PCC 7425]
          Length = 912

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYAD 63
          ++I  + +  F+ ++     F        G NG GKT+ILEAI   L    G+   S  +
Sbjct: 1  MEILSVTLKNFKVHSDREFTFQPGMNAICGVNGAGKTSILEAIAWVLFDYYGY---SKTE 57

Query: 64 VTRIGSPSFFSTFARVEGMEGL 85
          + + G  S           +G 
Sbjct: 58 LIKSGCASAQVAVTFTSNADGR 79



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 20/197 (10%)

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                  + +E Q+A     +   R      L      Y    +   I       +   +
Sbjct: 731 RPKQEQVAELERQLA-ARQALAQERDRTEVELQKHQQIYQFIGDARQIYNKSGPRITSFY 789

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKV 294
            QS  A  +   ++L +   ++             D  +   +     +    S GEQ  
Sbjct: 790 LQSISAQADRLFRELLNRPDVNLE--------WTEDYEIRIQEAGHWRSFKSLSGGEQMC 841

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDK 352
             + + L+  +++++      I   DE + ++D  +R  L   + ++ S  Q+F+     
Sbjct: 842 AALAVRLSLLKVLADID----IAFFDEPTTNMDRLRRTQLAEALGNLRSFRQLFVIS-HD 896

Query: 353 SVFDSLNETAKFMRISN 369
             F+ + E    +R+  
Sbjct: 897 DTFEHMTEN--VIRVEG 911


>gi|148651962|ref|YP_001279055.1| DNA repair protein RecN [Psychrobacter sp. PRwf-1]
 gi|148571046|gb|ABQ93105.1| DNA repair protein RecN [Psychrobacter sp. PRwf-1]
          Length = 603

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 66/237 (27%), Gaps = 60/237 (25%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F       L       +  G+ G GK+ +L+A+S    GR     +   + R
Sbjct: 2   LTSLTLQNFALINHHELSLYDGFNVITGETGAGKSLLLDALSLCIGGR-----ADTSMVR 56

Query: 67  IGSPSFFS----------------------------------------TFARVEGMEGLA 86
            G  +                                                E  E   
Sbjct: 57  HGKDNADIYAQFEFVLPATKNRSTTAKDSANNNTEPSANSNDKGTVALIQDWFERHEREF 116

Query: 87  DISIKLETRDDRSVR-CLQINDVVIRV--VDELNKHLRISWLVPSMDRIFSGLSMERRRF 143
           D  I +  +   + R    +N V + +  + EL   L       +   +         ++
Sbjct: 117 DGEILIRRQLSSNGRSKAWLNGVPVSLTELKELGAMLVNIHSQHAQQALLK--PAFVVQW 174

Query: 144 LDR------MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           LD       +    +  +      +++L R    +  +    +     + +Q+A++ 
Sbjct: 175 LDNIAGLQPLAAQTEHAY----RAYQKLKRQAEEVAAKEAHRNDRIELLNSQLADIS 227


>gi|291480605|gb|ADE06380.1| structural maintenance of chromosomes 1-like 1 [Microtus arvalis]
 gi|291480607|gb|ADE06381.1| structural maintenance of chromosomes 1-like 1 [Microtus levis]
          Length = 104

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
          +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4  LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64 VTRIGSP 70
          +   G+P
Sbjct: 64 LI-HGAP 69


>gi|262370092|ref|ZP_06063419.1| hypothetical protein HMPREF0016_01889 [Acinetobacter johnsonii
           SH046]
 gi|262315131|gb|EEY96171.1| hypothetical protein HMPREF0016_01889 [Acinetobacter johnsonii
           SH046]
          Length = 553

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 62/212 (29%), Gaps = 40/212 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L L  D    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLALDIDQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQINDVV- 109
            GS     T                   ++   G   +   +            IN    
Sbjct: 57  FGSDKADVTAIFSYQEHSPEAVWLKAHELDDESGEIHLRRVIFATGRSK---AWINGRPS 113

Query: 110 -IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR-------RRMID 161
            +  + E+ + L   +   S  ++        RR+LD     +                 
Sbjct: 114 SLAELKEIGRLLVQLYSQHSQQQLLE--PPYPRRWLD-----LYHNFYPEAQAVREAYST 166

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +++ +R     L           ++  Q+ EL
Sbjct: 167 WQKDIRQHQAALDAQATRKQRMDTLNLQLEEL 198


>gi|323342052|ref|ZP_08082285.1| hypothetical protein HMPREF0357_10465 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464477|gb|EFY09670.1| hypothetical protein HMPREF0357_10465 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 978

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 14/128 (10%)

Query: 1   MTNRIKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGF 56
           M   + +K + +  F+++A  + + FD   T  VG NG GK+NI +AI   L     +  
Sbjct: 1   MGVSMFLKKIEMQGFKSFADKVVINFDDAVTGIVGPNGCGKSNISDAIRWVLGEQSVKSM 60

Query: 57  RRASYADVTRIGSP-------SFFSTFARVEGM---EGLADISIKLETRDDRSVRCLQIN 106
           R +S  DV   GS        +  +     E         ++ I      D       IN
Sbjct: 61  RGSSMTDVIFNGSETRRKVNLAEVTLVFNNEARPLNSDYEELEITRRLYRDTRESEYLIN 120

Query: 107 DVVIRVVD 114
            V  R+ D
Sbjct: 121 KVPCRLRD 128


>gi|116872799|ref|YP_849580.1| DNA repair protein RecN [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741677|emb|CAK20801.1| DNA repair protein RecN [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 563

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 67/201 (33%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG       D  R
Sbjct: 2   LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----STDFIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G               +F    A +E     +D  +  E    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFALAEDNFACRNALLENGIDASDNMVVFERSLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    +     +++    +F+ ++R 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEFQTIVRE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197


>gi|67921171|ref|ZP_00514690.1| SMC protein, N-terminal [Crocosphaera watsonii WH 8501]
 gi|67857288|gb|EAM52528.1| SMC protein, N-terminal [Crocosphaera watsonii WH 8501]
          Length = 1008

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 95/262 (36%), Gaps = 39/262 (14%)

Query: 9   FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            L +  F +Y  + L F   HT    G NG GK+++LEAI+++  G+  R A+  D+   
Sbjct: 5   QLTLKNFLSYRDIILDFRGLHTACICGANGAGKSSLLEAITWVIWGKS-RTATDEDIIHT 63

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
            +      + RV+      + S K+  R  +  +   ++                 + + 
Sbjct: 64  TAD-----YVRVDFEFICYEQSYKI-IRSRQRGKSNTLD-----------------FQIN 100

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
           S D   S      R   D ++  +   +   +          +  L +G  D        
Sbjct: 101 SGDEFISLSGKGVRATQDIIIATLKLDYDTFIN---------SAYLRQGRADEFMLRGAT 151

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
            +   L   + + + + +   +  + +  + ++   +KL+L        ++     ++++
Sbjct: 152 DRKKVLAELLKLEQYQHLAEKAKDLSKQYKGQS-EQLKLNLDRVKQQIEERKNINNQQKF 210

Query: 248 ----AKKLFDGRKMDSMSRRTL 265
                 K+   ++ D    +T+
Sbjct: 211 INQEIDKIQKSQQTDQEKLQTI 232


>gi|241888878|ref|ZP_04776184.1| chromosome segregation protein SMC [Gemella haemolysans ATCC 10379]
 gi|241864554|gb|EER68930.1| chromosome segregation protein SMC [Gemella haemolysans ATCC 10379]
          Length = 1184

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 14/155 (9%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +K+  + ++ F+++       F       VG NG GK+NI++AI   L     +  R +S
Sbjct: 1   MKLAKVEVTGFKSFQKKTTFEFKNNLIGVVGPNGSGKSNIIDAIRWVLGEQSAKNLRGSS 60

Query: 61  YADVTRIGSPSFFS-TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             DV   G+       FA V       + S +++ R  R+       D     + ++   
Sbjct: 61  MKDVIFSGTEDAKRKNFAEVAVTFSNGEDSCEIKRRLYRNGDSEYYIDNKRAKLKDITDM 120

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
                +      I +            ++RR  ++
Sbjct: 121 YLDLGINKESYSIITQGKVEDIISSKPVDRRAIIE 155


>gi|226193270|ref|ZP_03788880.1| RecF/RecN/SMC N domain protein [Burkholderia pseudomallei Pakistan
           9]
 gi|225934870|gb|EEH30847.1| RecF/RecN/SMC N domain protein [Burkholderia pseudomallei Pakistan
           9]
          Length = 774

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
           +K++ + I  FR  + +        ++ VG N  GK++I EAI  
Sbjct: 91  MKLRRVVIKNFRKLSDIDFSISKNLSVVVGPNASGKSSIFEAIRL 135


>gi|71745622|ref|XP_827441.1| structural maintenance of chromosome 1 [Trypanosoma brucei
          TREU927]
 gi|70831606|gb|EAN77111.1| structural maintenance of chromosome 1, putative [Trypanosoma
          brucei]
          Length = 1275

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
          +I+ + +  F++Y+  + +      T  VG NG GK+N+++A+ F+         R  S 
Sbjct: 4  RIERVELFNFKSYSGHVTIGPLKDFTCIVGPNGSGKSNLMDALCFVLSSNSTATLRGGSP 63

Query: 62 ADVTRIGSP--SFFSTFARVEGMEGLADISI 90
           D    G+     F T             SI
Sbjct: 64 TDFIHRGAQQRECFVTVVLRHSRADSIGSSI 94


>gi|311113650|ref|YP_003984872.1| ATP-dependent OLD family endonuclease [Rothia dentocariosa ATCC
          17931]
 gi|310945144|gb|ADP41438.1| ATP-dependent OLD family endonuclease [Rothia dentocariosa ATCC
          17931]
          Length = 682

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   ++IK + I  FR    + + F+   T F+G NG GK++IL A+ +      F  A+
Sbjct: 1  MEENMRIKTVEIKNFRLLKDVSIDFN-NLTSFIGPNGSGKSSILYALDW------FFNAN 53

Query: 61 YADV 64
           +++
Sbjct: 54 ASNL 57


>gi|261331644|emb|CBH14638.1| structural maintenance of chromosome 1, putative [Trypanosoma
          brucei gambiense DAL972]
          Length = 1275

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
          +I+ + +  F++Y+  + +      T  VG NG GK+N+++A+ F+         R  S 
Sbjct: 4  RIERVELFNFKSYSGHVTIGPLKDFTCIVGPNGSGKSNLMDALCFVLSSNSTATLRGGSP 63

Query: 62 ADVTRIGSP--SFFSTFARVEGMEGLADISI 90
           D    G+     F T             SI
Sbjct: 64 TDFIHRGAQQRECFVTVVLRHSRADSIGSSI 94


>gi|262382865|ref|ZP_06076002.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295743|gb|EEY83674.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 328

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 2/94 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYADV 64
          I  ++IS F++   + L    +  + +G   VGK+N+LEA+S       +  R+ S    
Sbjct: 5  INHIHISNFKSLKDVTLDQCRRINLIIGKPNVGKSNLLEAMSLFCLPYLKYTRKRSIQQF 64

Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98
           R  + +       V+    +    + +E + D 
Sbjct: 65 IRTENDAELFFDGHVDSPISVKTNKVNVEVKMDN 98


>gi|255945211|ref|XP_002563373.1| Pc20g08500 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588108|emb|CAP86179.1| Pc20g08500 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1141

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 86/303 (28%), Gaps = 50/303 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +    +         VG NG GK+ IL AI+    G+     R  S   
Sbjct: 101 LERVECYNFMCHDHFYVELGPLINFIVGKNGSGKSAILTAITLCLGGKASATNRGQSLKS 160

Query: 64  VTRIGSPSFFSTFARVEGMEG---------LADISIKLETRDDRSVRCLQINDVVIRV-- 112
             + G  +           +G            +            +    N  ++    
Sbjct: 161 FIKEGKENSTIIVRIKNQGDGAYLADDFGKTIIVERHFSRSGTSGFKVKSENGRIVSTKK 220

Query: 113 --VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRH----- 155
             +D +  +  +    P        +   + +    E+ +F      +  +D  +     
Sbjct: 221 GDLDAITDYFSLQIENPMNVLSQDMARQFLSTSSPAEKYKFFVKGVQLEQLDNDYRLVEE 280

Query: 156 --------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA-------QMAELGVKINIA 200
                    R      ++++ R  L  +    S    S+         QMA         
Sbjct: 281 SLDSIEEKLRASTQDVQVLQNRKELAKKKLEISDQHDSLRRRIRNIRGQMA-WAQVEEQE 339

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
           R+E+  +L+  I E  +K      +L+      DG   +   A +  +   +      D 
Sbjct: 340 RMEI--SLTEQIAEADRKIAEAESRLTRFDAAFDGVAAEETAAGEHSWRAAVAVNEAQDE 397

Query: 260 MSR 262
             +
Sbjct: 398 RDK 400


>gi|7258371|emb|CAB77587.1| structural maintenance of chromosomes (SMC)-like protein
           [Arabidopsis thaliana]
          Length = 1265

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 17/151 (11%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           KI  L +  F++Y     +      T  +G NG GK+N+++AISF+   R    R +   
Sbjct: 10  KILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLK 69

Query: 63  DVT-----RIGSPSFFSTFARV-----EGMEGLADISI----KLETRDDRSVRCLQINDV 108
           D+      R         F R+     +G+E     SI      E R D  V  L   + 
Sbjct: 70  DLIYAFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSAGGSEYRIDNRVVNLDEYNG 129

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSME 139
            +R +  L K          ++ I S    E
Sbjct: 130 KLRSLGILVKARNFLVFQGDVESIASKNPKE 160


>gi|323141212|ref|ZP_08076113.1| chromosome segregation protein SMC [Phascolarctobacterium sp. YIT
           12067]
 gi|322414355|gb|EFY05173.1| chromosome segregation protein SMC [Phascolarctobacterium sp. YIT
           12067]
          Length = 1189

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 121/379 (31%), Gaps = 52/379 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++K  +   F+++A    L FD   T  VG NG GK+NI +AI ++   +     R + 
Sbjct: 1   MRLKSFSTYGFKSFADKTELTFDKGITAVVGPNGSGKSNISDAIRWVLGEQSAKYLRGSK 60

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             DV   GS        A V      +D ++ L+       R +         IN    R
Sbjct: 61  MEDVIFSGSGKRRALGVAEVTVDFDNSDRTLPLDFEQVSLTRRIFRSGESEYAINKKSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          +D + +    +RR   +         +R R  D  
Sbjct: 121 LKDIIDLMADTGLGKGSMSIIGQNKIDEVLNSRPEDRRSLFEEAAGIAK--YRLRKKDAV 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMA----------ELGVKINIAR----VEMINALS 209
           R +      LT      S   +    +A          EL   +   R    +  ++AL 
Sbjct: 179 RKLDDTANNLTRINDIRSEVDAQVEPLAQAAAKTQQFNELSEALRRCRLSVLLRRLDALE 238

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY--AKKLFDGRKMDSMSRRTLIG 267
               E   K+       S      G        +++E     + ++  + D  +R T   
Sbjct: 239 ETGNELQAKKEAAASAYSEQAAKVGSMQAEAVQVQQELDKLAEAYNKLQDDIKNRETA-- 296

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
                L     D+ +     S  E+        L                 + E++   D
Sbjct: 297 -----LEKLRGDQKVLDERVSQNEKASE----RLVQRNERLEQQVREQEARMQELATEFD 347

Query: 328 E-DKRNALFR-IVTDIGSQ 344
             +KR+A+    V  + +Q
Sbjct: 348 AVEKRHAVADGAVKHLQAQ 366


>gi|242398710|ref|YP_002994134.1| chromosome segregation ATPase [Thermococcus sibiricus MM 739]
 gi|242265103|gb|ACS89785.1| chromosome segregation ATPase [Thermococcus sibiricus MM 739]
          Length = 1177

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 74/225 (32%), Gaps = 33/225 (14%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
           ++ L +  F++Y    + + F    T  VG NG GK+NI +AI F+  G      R    
Sbjct: 4   VEKLEMRGFKSYGSRKIVVPFSRGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMRATRI 63

Query: 62  ADVTRIGS-PSFFSTFARVEGMEGLADISIKL---ETRDDRSVR-----CLQINDVVIRV 112
            D+   G+     + +A V       D    +   E    R V         +N      
Sbjct: 64  GDLIFAGTKEEAPAKYAEVAMYFNNEDRGFPIDEDEVVIKRRVYPDGRSAYWLNGKRTSR 123

Query: 113 VDELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            D L   L  + + P    +               ERR  +D +           + +++
Sbjct: 124 SDIL-DVLSAAMISPDGYNLVLQGDITKFIKMSPTERRMIIDEISG---------IAEYD 173

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
              +     L +   + +    +  ++     K+   R + +  L
Sbjct: 174 EKKKKAMEELKQAEENLARVDLLIREVKTQLDKLEKERNDALRYL 218



 Score = 37.6 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 272  DLIVDYCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
            D+      K +      S GE+ +  +    A           AP  L DEI AHLD+  
Sbjct: 1053 DIEAKPAGKEVKRIEAMSGGEKALTALAFVFA-----IQHFKPAPFYLFDEIDAHLDDAN 1107

Query: 331  RNALFRIVTD--IGSQIFM 347
               +  ++ +    SQ  +
Sbjct: 1108 VKRVADLIKEASKDSQFIV 1126


>gi|288574647|ref|ZP_06393004.1| SMC domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570388|gb|EFC91945.1| SMC domain protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 1135

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 94/267 (35%), Gaps = 34/267 (12%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + I  L +  F+++  S  L      T  VG NG GK+NIL+ + +    S G   R   
Sbjct: 1   MYIARLQLKNFKSFGGSHELPLSEGFTAIVGPNGSGKSNILDGLRWGLGDSNGGRLRITR 60

Query: 61  YADVTRIGSPSFF---STFARVEGMEGLADISIKLETRDDR-------SVRCLQINDVVI 110
            +D+   G+ +     ST   +E  +G     I+    D+         V+    +   +
Sbjct: 61  QSDLLFQGTTTRQPSKSTEVALELKDGDTSTVIRRRFSDESGAVTLVDGVKHRLQDLSEV 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           +    L+           +    +   M+RR  L+  +F ID         +    + R+
Sbjct: 121 KRRWRLDGDRFAFIGQGDVTDAITHRPMQRRNHLE-ELFGID--------TYR---KRRD 168

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
             L +          +EA MAEL       R E+  A++        +      +     
Sbjct: 169 DALNKILSAEDELGRLEALMAEL----ESRRREIAPAVAKAKKARDIETALDESRADWYR 224

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKM 257
                 ++      E+ ++KL + R+ 
Sbjct: 225 LRRRDMEREI----EDLSRKLVEERRR 247


>gi|218245617|ref|YP_002370988.1| hypothetical protein PCC8801_0748 [Cyanothece sp. PCC 8801]
 gi|218166095|gb|ACK64832.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
          Length = 377

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          ++ L I  FR +    L    +  + VG+N  GKT++LEAI   S
Sbjct: 2  LQSLKIENFRCFDEFELQNLGRINLLVGENNSGKTSVLEAIQIFS 46


>gi|126732367|ref|ZP_01748167.1| SMC protein [Sagittula stellata E-37]
 gi|126707236|gb|EBA06302.1| SMC protein [Sagittula stellata E-37]
          Length = 1151

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +    L ++ F+++  S  L+  +  T  VG NG GK+N+LEA+ ++   +  +  R   
Sbjct: 1   MHFSRLRLTGFKSFVDSTDLIISSGLTGVVGPNGCGKSNLLEALRWVMGETRAKAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+ S     F      ++  + LA         +++  R  R V    ++N  
Sbjct: 61  MEDVIFAGASSRPARNFAEVALTIDNGDRLAPAGFNDTDQLEVVRRITRDVGSAYKVNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR 146
             R  D   L          P++ R      + +     RR+ L+ 
Sbjct: 121 DTRARDVQMLFADAATGATSPALVRQGQISELINARPANRRKVLED 166


>gi|110639386|ref|YP_679595.1| DNA repair protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110282067|gb|ABG60253.1| DNA replication and repair protein RecN [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 551

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 89/261 (34%), Gaps = 25/261 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L L   A   I  G+ G GK+ +L A+  L    +  +        
Sbjct: 2   LQNLVIQNYSLIEDLELAPSANFNIITGETGAGKSIMLGAVGLLLGNRADTKVLLHTDRK 61

Query: 63  DVT----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDEL 116
            +     +IGS    + F   + ++      I+ E   +   R   IND  +    + +L
Sbjct: 62  CIIEGTFQIGSYKLETLFEEYD-LDYTNQCIIRREISSNGKSRAF-INDTPVTLDALKKL 119

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
             +L         D +  G    +   LD             + D+++  +    L    
Sbjct: 120 GDYLMDV--HSQHDTLLLGSVAYQLSLLDGFASNQS-----ALKDYQQAFKKYKDLQHRF 172

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVE--MIN-ALSSLIMEYVQKENFPHIKLSLTGFLD 233
               +    ++ Q A+    I     E  +I   + +   E  + E+   IK  L   LD
Sbjct: 173 QLKKNELQELQQQ-ADYNQFIYTELAEAALIEGEMEAKEAELKKIEHAEDIKQKLEATLD 231

Query: 234 G--KFDQSFCALKEEYAKKLF 252
                +QS  +  + Y K+L 
Sbjct: 232 ALSNSEQSILSTLQNYNKQLQ 252


>gi|302331138|gb|ADL21332.1| Conserved hypothetical protein [Corynebacterium pseudotuberculosis
           1002]
          Length = 584

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 57/396 (14%), Positives = 114/396 (28%), Gaps = 104/396 (26%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR------------ 54
           I  + I  +R +       +A   I VG N  GK+ +LEAI+    GR            
Sbjct: 5   ITRVQIRGYRRFQDFTFEPEAGTNIIVGGNEAGKSTLLEAITLALAGRVNGVRAKEYLNP 64

Query: 55  ---GF-------------RRASYADVTRIGSPSFFSTFARVEGMEGLADIS----IKLET 94
                             R    A   RI           +E + G+ ++     + L  
Sbjct: 65  YWFNHTMVHDFFEKPPNERSHRDAPTFRIDV-YLDVESGELEKLRGVNNMENADSVGLSI 123

Query: 95  RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS----GLSMERRRFLDRMVFA 150
                      +    + +D+  +      ++P    +      G    +RR  +  +  
Sbjct: 124 -------WAHPDPEYTQELDDYFQQEDCPEVLPVEYYMVEWLSFGGHPVQRRPKELGISL 176

Query: 151 IDPR--HRRRMIDF--ERLMRGRNRLLTEGYFDSSWCSSIEAQM-AELGVKINIARVEMI 205
           ID R     R +D+   +++  R         D S  S    ++ A LG        E++
Sbjct: 177 IDSRTIRSERGVDYYTRQILETR-----LDPKDRSRVSVDHRKLRATLG-------REVL 224

Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
             L+  + E  Q      + L +       ++                            
Sbjct: 225 RDLNEELAEENQSIPGAVVGLQIDQSRSASWEA--------------------------T 258

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           + P   D+ +    +            K +L          +      + ++ ++E   H
Sbjct: 259 LIPDVDDVPLSMAGQGNQAVA------KTIL---------AMGRNADTSSLVFIEEPENH 303

Query: 326 LDEDKRNALFRIV--TDIGSQIFMTGTDKSVFDSLN 359
           L   +   L   +  +    Q+F+T     + + L 
Sbjct: 304 LSHTRMRQLISYIERSAQNRQVFITTHSSYILNRLG 339


>gi|309791173|ref|ZP_07685705.1| chromosome segregation protein SMC [Oscillochloris trichoides DG6]
 gi|308226735|gb|EFO80431.1| chromosome segregation protein SMC [Oscillochloris trichoides DG6]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/300 (17%), Positives = 98/300 (32%), Gaps = 41/300 (13%)

Query: 1   MTNRIKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---F 56
           M   + +K L+I  F+ +A    + F    T  VG NG GK+NI +A+ ++   +     
Sbjct: 1   MGPFMYLKRLDILGFKTFATRTSVEFQPGITAIVGPNGSGKSNIADAVRWVLGEQSLSTL 60

Query: 57  RRASYADVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQIND 107
           R     ++      R  +         ++  + L  +     T   R+ R       IN 
Sbjct: 61  RCKRSEELIYSGGGRRAAAGLAEVSLTIDNSDRLLPLDFDEVTITRRATRAGENEYFINR 120

Query: 108 VVIRVVD-----ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDP------- 153
             +R+ D     E             +D   +    ERRR  +    +   D        
Sbjct: 121 NRVRLRDLQAATEPLGGSYTIINQGLVDAALTLRPEERRRLFEDAAEIGGFDLRRAEALR 180

Query: 154 ------RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-----GVKINIARV 202
                  + +R+ D    +  R R+L      +     ++A++  L       +   A  
Sbjct: 181 RLRETDANLQRVADLLEELEPRLRVLKRQAGQARQYRELQAELRTLLERHFASQWAQASA 240

Query: 203 EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
           E     + +       ++    +L+ +  L G   +S    +E     L   R  D   R
Sbjct: 241 ETARTRAEVERMQHLLDHARTAQLAASHELRG-LRESLRERREALG--LLHQRSSDLHRR 297


>gi|328863712|gb|EGG12811.1| hypothetical protein MELLADRAFT_32282 [Melampsora larici-populina
           98AG31]
          Length = 743

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 18/118 (15%)

Query: 8   KFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRRA 59
           + L I  F++Y    +   F     + VG NG GK+N   AI FL      + GR  R++
Sbjct: 1   QSLTIQGFKSYRDATIVEEFSPGVNVVVGRNGSGKSNFFSAIRFLLNDQYNALGREERQS 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
               +   G+ +  +  A VE     +D       R       + I   +    DE +
Sbjct: 61  ----LLHEGADNNSTFSAFVEATFDNSDH------RFPTGKTQVIIRRTIGSKKDEYS 108


>gi|285018456|ref|YP_003376167.1| DNA repair protein recn (recombination protein n) [Xanthomonas
           albilineans GPE PC73]
 gi|283473674|emb|CBA16177.1| probable dna repair protein recn (recombination protein n)
           [Xanthomonas albilineans]
          Length = 555

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/208 (21%), Positives = 76/208 (36%), Gaps = 34/208 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+I +F       L      T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LKHLSIKDFAVVRGTELELGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+                  T+ R   ++  A   ++   R D   R   IN   +   
Sbjct: 57  HGAERAELSAEFSLPATAPARTWLRENELDDDAHCQLRRVIRADGGSRA-WINGRPVTLT 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMIDFERL 165
            + EL  HL           + S  S         R   +R +       R   + ++ L
Sbjct: 116 QLAELAGHLVEIHGQHEHQALLSRSSQLGLLDAYARNETERTMV------RSTAMRWQAL 169

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +  R  LL +G   S     ++ Q++EL
Sbjct: 170 LTERETLLAQGDV-SDRIGFLQHQLSEL 196


>gi|91091932|ref|XP_966409.1| PREDICTED: similar to structural maintenance of chromosomes smc3
           isoform 1 [Tribolium castaneum]
 gi|270000783|gb|EEZ97230.1| hypothetical protein TcasGA2_TC011028 [Tribolium castaneum]
          Length = 1203

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 91/280 (32%), Gaps = 27/280 (9%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MHIKQVIIQGFKSYRDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +   +D  + LE  +      + +  V+    D+   + +
Sbjct: 61  RQALLHEGTGPRVVSAYVEIIFDNSDARVPLEHEE------IYLRRVIGAKKDQYFLNKK 114

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNRLLTEGY 177
           +      M+ + S                 +P +  +     ++       R +LL E  
Sbjct: 115 VVPRSEVMNLLESAG-----------FSNSNPYYIVKQGKINQMATAPDAHRLKLLREVA 163

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
               +    +  MA L       +VE I      I E +        +L      D K  
Sbjct: 164 GTRVYDERRDESMAILRE--TEGKVEKIEEFLRTIEERLSTLEEEKEELKQYQHYD-KIR 220

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
           ++   +  E        +  D   +R   G  +  L V+ 
Sbjct: 221 RALEYIIHEVELNENKRKLADLEKQRNESGNEQEKLAVNL 260



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V +G+  A           AP  L DEI   LD   R A+  ++ ++ S+  F
Sbjct: 1102 SGGQKSLVALGLIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVANMIHELSSEAQF 1156

Query: 347  MTGTDKSVFDSLNETAKFMRIS 368
            +T T     + L    KF  + 
Sbjct: 1157 ITTT--FRPELLEHAHKFYGVK 1176


>gi|167771630|ref|ZP_02443683.1| hypothetical protein ANACOL_03002 [Anaerotruncus colihominis DSM
           17241]
 gi|167666270|gb|EDS10400.1| hypothetical protein ANACOL_03002 [Anaerotruncus colihominis DSM
           17241]
          Length = 1192

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 90/279 (32%), Gaps = 42/279 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++++ L I  F+++     L F    T  VG NG GK+NI +A+ ++      +  R   
Sbjct: 4   LRLRGLEIQGFKSFPDKTRLTFHDGITAVVGPNGSGKSNIADAVRWVLGEQSTKTLRGGK 63

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ +     +      +E  +G        + +  R  RS     +IN   +R
Sbjct: 64  MEDVIFGGTQARKPQGYAHVQLTIENADGALPYDSAEVSVSRRLYRSGESEYRINGTSVR 123

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          +  I S  S +RR   +        R+R       
Sbjct: 124 LRDVHELFMDTGLGRDGYSIIGQGRIAEIVSAKSTQRREIFEEAAGISKYRYR------- 176

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
                R                +   +AEL  +        +  L +   +  +      
Sbjct: 177 -----RQEAQRRLEAAEENLLRLRDILAELEAR--------VGPLQAQAEKARRFLTLAE 223

Query: 224 IKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            K +L         D+S   L+E+  K L      D + 
Sbjct: 224 EKKTLELSLWIATLDRSRALLREQEDKLLLCRDDHDRIQ 262


>gi|166365126|ref|YP_001657399.1| hypothetical protein MAE_23850 [Microcystis aeruginosa NIES-843]
 gi|166087499|dbj|BAG02207.1| hypothetical protein MAE_23850 [Microcystis aeruginosa NIES-843]
          Length = 457

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 130/414 (31%), Gaps = 79/414 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           ++I+ + ++    +  L +            T+FVG+NG GKT IL+A   L+    +  
Sbjct: 1   MEIQRVILNNIGLFEKLEISLAPTEQNPSNITVFVGNNGAGKTAILKA---LATSLSWFT 57

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           A    +T  GS +  S  A           SI++E  D        +N+     +D   +
Sbjct: 58  ARL--LTEKGSGNPISEDAIFNTANA---GSIEIEVWDSSKS----LNNPDQSDIDHYFR 108

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG-RNRLLTEGY 177
                        I +     R+            ++   + D  RL    R+ L  +  
Sbjct: 109 W------------ILAKNRKGRKA-----------QYNSNLNDCTRLANRYRDALTHDDK 145

Query: 178 FDSSWCSSIEAQMAELGV--KINIARVEM--------------INALSSLIMEYVQKENF 221
                 +    +   L +  KI      +                       E    EN 
Sbjct: 146 TSLPLIAFYPVERVVLDIPLKIRTKHTFLQLDGYDNSLSQGVDFRRFFEWFREREDTENE 205

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG---PHRSDLIVDY- 277
             +   +   L     ++   + +   ++    +     + RT IG   PH  +L V   
Sbjct: 206 SGVPEDVLNQLRPIMAETNQDVWQWLNERNASAKDRQLTAVRTAIGRFMPHLDNLRVRRK 265

Query: 278 ---------CDKAITIAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEIS 323
                      + + +A  S GE+ ++ +       LA     + N      I+L+DE+ 
Sbjct: 266 PRLYMAVDKNGETLNVAQLSQGEKSLMALVGDIARRLAMLNPALENPLAGDGIVLIDEVD 325

Query: 324 AHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
            HL    +  L   +T+     Q  +T     V            ++N +   +
Sbjct: 326 LHLHPSWQRRLCERLTETFPNCQFVLTTHSPLVISDCK-NVLIYTLANGELRQL 378


>gi|149915537|ref|ZP_01904063.1| chromosome segregation protein, putative [Roseobacter sp. AzwK-3b]
 gi|149810429|gb|EDM70272.1| chromosome segregation protein, putative [Roseobacter sp. AzwK-3b]
          Length = 1151

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/226 (20%), Positives = 80/226 (35%), Gaps = 30/226 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     L      T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MQFTKLRLTGFKSFVDPTDLHIKHGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+ S     F      ++  + LA         +++  R  R V    ++N  
Sbjct: 61  MEDVIFAGAASRSARNFAEVSIHIDNSDRLAPSGFNDSDHLEIVRRITRDVGSAYKVNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKSRRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI-ARVEMI 205
             E  ++ R         D      +  Q+A+L  +    AR   I
Sbjct: 177 RHEAELKLRGAEQNLARVDDV-IEQLANQLAQLARQARQAARYRAI 221


>gi|47076774|dbj|BAD18317.1| DNA repair protein [Geobacillus stearothermophilus]
 gi|49481869|gb|AAT66646.1| DNA repair and genetic recombination protein [Geobacillus
          stearothermophilus]
          Length = 573

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R
Sbjct: 2  LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G+       A +EG+
Sbjct: 57 FGAEK-----AEIEGL 67


>gi|332645744|gb|AEE79265.1| structural maintenance of chromosomes 1 [Arabidopsis thaliana]
          Length = 1239

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 17/151 (11%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           KI  L +  F++Y     +      T  +G NG GK+N+++AISF+   R    R +   
Sbjct: 10  KILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLK 69

Query: 63  DVT-----RIGSPSFFSTFARV-----EGMEGLADISI----KLETRDDRSVRCLQINDV 108
           D+      R         F R+     +G+E     SI      E R D  V  L   + 
Sbjct: 70  DLIYAFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSAGGSEYRIDNRVVNLDEYNG 129

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSME 139
            +R +  L K          ++ I S    E
Sbjct: 130 KLRSLGILVKARNFLVFQGDVESIASKNPKE 160


>gi|298486338|ref|ZP_07004401.1| Chromosome partition protein smc [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159345|gb|EFI00403.1| Chromosome partition protein smc [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 1162

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++      L G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEIGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|294496457|ref|YP_003542950.1| condensin subunit Smc [Methanohalophilus mahii DSM 5219]
 gi|292667456|gb|ADE37305.1| condensin subunit Smc [Methanohalophilus mahii DSM 5219]
          Length = 1173

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 25/165 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK +    F+++   +++ F    T   G NG GK+NI++ I F   LS  R  R   
Sbjct: 1   MYIKKIEFMNFKSFGKKVKIPFFDDFTTISGPNGSGKSNIIDGILFVLGLSSSRTLRAEK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKL---ETRDDRSVRC--------LQINDVV 109
             D+   G  S     A+V       D  + +   E    R VR            N   
Sbjct: 61  LTDLIYNGEKSKNPDNAQVTIYFDNKDRELPVDNDEVVISRKVRSTDNGYYSYFYFNGKS 120

Query: 110 IRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLD 145
           +  + +++ +L  + + P          + RI +  + ERR+ +D
Sbjct: 121 V-SLGDVHNYLAKARVTPEGYNVVMQGDVTRIITMTAGERRKIID 164


>gi|219128749|ref|XP_002184568.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404018|gb|EEC43967.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1232

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 6/98 (6%)

Query: 5  IKIKFLNISEFRNYASL-RLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
          + IK + IS FR++     +  F       VG NG GK+N+L+A+ F+     F   R+ 
Sbjct: 1  MHIKQITISNFRSFRQQPEIEAFSTHTNCVVGRNGSGKSNLLDAVQFVLLAPRFANLRQE 60

Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97
              +   GS S  +  A VE +   AD    LE  D+
Sbjct: 61 ERQALLHEGSGSA-AVNAFVEIVFDNADHRFALEHSDE 97


>gi|254442049|ref|ZP_05055525.1| chromosome segregation protein SMC [Verrucomicrobiae bacterium
           DG1235]
 gi|198256357|gb|EDY80665.1| chromosome segregation protein SMC [Verrucomicrobiae bacterium
           DG1235]
          Length = 1293

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 113/363 (31%), Gaps = 51/363 (14%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +  L ++ F+++A   L  F+   T  VG NG GK+NI ++I   L     +  R   
Sbjct: 1   MYLSALKVNGFKSFADPTLLKFNRGVTAVVGPNGCGKSNIADSIRWVLGEQSAKALRGGK 60

Query: 61  YADVTRIGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
             DV   G+           +   T    E      ++ I  +   D       IN    
Sbjct: 61  MQDVIFEGTDKRKPLNICEVAITLTDCEKELGSDFNEVEIARKVHRDGGSN-YYINGKAC 119

Query: 111 RVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           R+ D         + +          +D+I S    ERR   +             +  +
Sbjct: 120 RLKDIQRLFMDTGIGRTSYSIMAQGQIDQILSSKPEERRAVFEEAAG---------ISKY 170

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENF 221
           +     R   L +     +  + +   + E+G +I ++ R          I   ++  + 
Sbjct: 171 KA---QRKETLNKLSHVEANLARVTDVIGEIGRQIGSLKRQATKAIRYKKISHKLRHLDV 227

Query: 222 PHIKLSLTGFLD--GKFDQSFCALK---EEYAKKLFDGRKMDSMSR--RTLIGPHRSDLI 274
            +               DQS   L+   +E A  L + +    + +  R  +     D  
Sbjct: 228 GYSAYQYQTMSATLADVDQSSSELQDEVDELATDLENKQGSLIVYKEERQTLIQKVQDSQ 287

Query: 275 VDYCDKAITIAHGST----GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
               D        S      + K+V +   +  A     +        L EI+   DE  
Sbjct: 288 QSVFDLRSMKEQASNAADMAQIKIVSLAERIEQANQDIASYESQ----LGEIAGRFDEHN 343

Query: 331 RNA 333
            + 
Sbjct: 344 SDK 346


>gi|145301282|ref|YP_001144122.1| SMC (structural maintenance of chromosomes) family protein
          [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142856059|gb|ABO92374.1| SMC (structural maintenance of chromosomes) family protein
          [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 669

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 17/93 (18%)

Query: 5  IKIKFLNISEFRNY------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          + ++ +  S +R +       +L    +    I VG+N  GKT I++AI  +     +  
Sbjct: 1  MYLRRIRASNYRAFGDGSVAPALDWELNPGLNILVGENDAGKTGIIDAIRQVLLTTSY-- 58

Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
              +  RI    F      ++G      +SI+
Sbjct: 59 ----ESIRIFEQDF-----HIQGANRSHTLSIE 82


>gi|79444781|ref|NP_191027.3| TTN8 (TITAN8); ATP binding / transporter [Arabidopsis thaliana]
 gi|332645742|gb|AEE79263.1| structural maintenance of chromosomes 1 [Arabidopsis thaliana]
          Length = 1238

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 17/151 (11%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           KI  L +  F++Y     +      T  +G NG GK+N+++AISF+   R    R +   
Sbjct: 10  KILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLK 69

Query: 63  DVT-----RIGSPSFFSTFARV-----EGMEGLADISI----KLETRDDRSVRCLQINDV 108
           D+      R         F R+     +G+E     SI      E R D  V  L   + 
Sbjct: 70  DLIYAFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSAGGSEYRIDNRVVNLDEYNG 129

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSME 139
            +R +  L K          ++ I S    E
Sbjct: 130 KLRSLGILVKARNFLVFQGDVESIASKNPKE 160


>gi|71661871|ref|XP_817950.1| structural maintenance of chromosome (SMC) family protein
          [Trypanosoma cruzi strain CL Brener]
 gi|70883173|gb|EAN96099.1| structural maintenance of chromosome (SMC) family protein,
          putative [Trypanosoma cruzi]
          Length = 1267

 Score = 55.7 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           I  + +  F++YA ++ +      T  VG NG GK+N+++A+ F+   S     R    
Sbjct: 4  HIDRVELYNFKSYAGNVTIGPLKDFTCIVGPNGAGKSNLMDALCFVLSPSATTTLRGKDA 63

Query: 62 ADVTRIGSP 70
           D+   G+ 
Sbjct: 64 TDLIHRGAQ 72


>gi|309774705|ref|ZP_07669729.1| DNA replication and repair protein RecF [Erysipelotrichaceae
          bacterium 3_1_53]
 gi|308917605|gb|EFP63321.1| DNA replication and repair protein RecF [Erysipelotrichaceae
          bacterium 3_1_53]
          Length = 174

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRR 58
          IK +    FRN  S + +FD +  I VG N  GKTN+L+ I           FR 
Sbjct: 2  IKSIEFKNFRNL-SCKFLFDNKLNIIVGKNNSGKTNLLDGIRLAFSTISGDYFRV 55


>gi|228992921|ref|ZP_04152845.1| DNA repair protein recN [Bacillus pseudomycoides DSM 12442]
 gi|228998965|ref|ZP_04158547.1| DNA repair protein recN [Bacillus mycoides Rock3-17]
 gi|228760582|gb|EEM09546.1| DNA repair protein recN [Bacillus mycoides Rock3-17]
 gi|228766778|gb|EEM15417.1| DNA repair protein recN [Bacillus pseudomycoides DSM 12442]
          Length = 583

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 103/277 (37%), Gaps = 51/277 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110
            G+                    + E ++   +  + +  RD         ++N  ++  
Sbjct: 61  YGTEKAEIEGLFYIEDDKHPCITKAEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTL 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164
            ++ E+ K L           + +    ER  F+      DR+V  ++  ++    ++E+
Sbjct: 121 SILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVNQLE-IYQGVYGEYEQ 176

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L +     L     +       E QMA         R+++I      I +   K +    
Sbjct: 177 LKKQ----LKSLTEN-------EQQMA--------HRLDLIQFQHEEIRKADLKVD-EEN 216

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +L+        F++ + AL + Y     DG  +D + 
Sbjct: 217 ELTEERLKISNFEKIYKALGDAYRSLSEDGSGLDHVR 253


>gi|322818970|gb|EFZ26236.1| structural maintenance of chromosome (SMC) family protein, putative
           [Trypanosoma cruzi]
          Length = 1265

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 90/294 (30%), Gaps = 55/294 (18%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
            I  + +  F++YA ++ +      T  VG NG GK+N+++A+ F+   S     R    
Sbjct: 4   HIDRVELYNFKSYAGNVTIGPLKDFTCIVGPNGAGKSNLMDALCFVLSPSATTTLRGKDA 63

Query: 62  ADVTRIGSPSFFSTFARV------------------EGMEGLADISIKLETRDDRSVRCL 103
            D+   G+         V                         D  I      D+  R  
Sbjct: 64  TDLIHRGAQRRECAVTAVFCHTTPISPAATATTATTTAAGQGRDTEISFTRAVDQRGRIT 123

Query: 104 -QINDVVIRVVDELN---------KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP 153
            +IN   +     L          +          ++ I    + ++ R L  ++  +  
Sbjct: 124 HKINGEPVDDRKYLAALSKFNVGTRVNNFLVFQHEVEAI----AQKKARELTDLLEQVS- 178

Query: 154 RHRRRMIDFERLMRG---------------RNRL--LTEGYFDSSWCSSIEAQMAELGVK 196
                  ++ R  +                R+ +  L +           E  +  +G +
Sbjct: 179 GSAALREEYNRCKKAHELANQELTTASAEKRDAVVALNQMRLHKKEAEKYEEVLRRIGEE 238

Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
                +  +  L S +    Q+ +    KL+         D+    +K EYA+K
Sbjct: 239 RRDEALVQLFYLESNLERQKQELHAFTEKLT-ALEKSIASDEDIRKMKREYAEK 291


>gi|295111234|emb|CBL27984.1| hypothetical protein [Synergistetes bacterium SGP1]
          Length = 377

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I+ L I  ++ + +  L  D    +  G NG GKT+++E +  L+
Sbjct: 2  IRKLEIHNYKLFRNFALELDGGVNLLCGPNGSGKTSVIEIVYALT 46


>gi|159041648|ref|YP_001540900.1| SMC domain-containing protein [Caldivirga maquilingensis IC-167]
 gi|157920483|gb|ABW01910.1| SMC domain protein [Caldivirga maquilingensis IC-167]
          Length = 804

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 4/112 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ + +   R+     +   +      G NG GKT IL++I+    G  +   RR   ++
Sbjct: 4   VELIEVENIRSIRKASVRLSSGVNFIHGLNGAGKTTILDSIALALYGTDWLKRRRIKLSE 63

Query: 64  VTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           +  IG+          +EG   +       E   +     +  +   +   D
Sbjct: 64  LVTIGASTGAVRLMINIEGRRYIIQRVFTREKVIESQTYVMSDDGSRVAGRD 115



 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 69/178 (38%), Gaps = 12/178 (6%)

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK----LFDGRKMDSMSR 262
            L  LI +  ++  F   K+     L    D +  AL++         L D  +M     
Sbjct: 626 RLRELISKRSERLRFIRGKIQEVAGLINAIDNAKPALRKALLNAINDELKDAFRMLRHKE 685

Query: 263 RTLIGPHRSDLIVDY---CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
             +      D  V       K + ++  S GE+ +V + +  A   L     G  PI+LL
Sbjct: 686 SLIDIYVTEDYEVMVKRSDGKELPVSMLSMGERNLVALVLRFA---LSKAILGDIPIMLL 742

Query: 320 DEISAHLDEDKRNALFRIVTDIGSQI--FMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           DE + HLD + R  +   + D+ + +   +  +    F++  +    + +++ +   +
Sbjct: 743 DEPTEHLDSEHRRRVSNWLRDLSNVVDTLVVTSHVDAFENTADNIIRVEVTSPRGESV 800


>gi|330965212|gb|EGH65472.1| hypothetical protein PSYAC_11291 [Pseudomonas syringae pv.
          actinidiae str. M302091]
          Length = 438

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  + +  F++Y S  L   A  T  +G N  GK+N+LEAI  L+     + +   D+TR
Sbjct: 2  LISIELKNFKSYESASLPLAA-MTFLIGANASGKSNVLEAIRLLNWLA--KGSRLEDITR 58


>gi|315654834|ref|ZP_07907739.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315490795|gb|EFU80415.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 122

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          R+ I+   I    +     L      T+ +G NG GKTN+L  I  LS  
Sbjct: 24 RMAIRSFRIRNLLSIRDTTLELVTPVTLLIGPNGAGKTNLLRGIELLSRL 73


>gi|237654254|ref|YP_002890568.1| ATPase AAA [Thauera sp. MZ1T]
 gi|237625501|gb|ACR02191.1| AAA ATPase [Thauera sp. MZ1T]
          Length = 530

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          +++  ++I  F+N   L L FD +   T+ +G NG GK+N++EAI+ +      RR 
Sbjct: 1  MRLDKVSIDGFKNLRGLELDFDERQLTTVLIGQNGAGKSNLIEAITQVFRWVDLRRN 57


>gi|49481865|gb|AAT66644.1| DNA repair and genetic recombination protein [Geobacillus
          stearothermophilus]
          Length = 573

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R
Sbjct: 2  LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G+       A +EG+
Sbjct: 57 FGAEK-----AEIEGL 67


>gi|49481871|gb|AAT66647.1| DNA repair and genetic recombination protein [Geobacillus
          stearothermophilus]
          Length = 573

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R
Sbjct: 2  LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G+       A +EG+
Sbjct: 57 FGAEK-----AEIEGL 67


>gi|49481861|gb|AAT66642.1| DNA repair and genetic recombination protein [Geobacillus
          stearothermophilus]
          Length = 573

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R
Sbjct: 2  LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G+       A +EG+
Sbjct: 57 FGAEK-----AEIEGL 67


>gi|49481873|gb|AAT66648.1| DNA repair and genetic recombination protein [Geobacillus
          stearothermophilus]
          Length = 573

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R
Sbjct: 2  LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G+       A +EG+
Sbjct: 57 FGAEK-----AEIEGL 67


>gi|42522699|ref|NP_968079.1| chromosome segregation SMC protein [Bdellovibrio bacteriovorus
          HD100]
 gi|39573895|emb|CAE79072.1| chromosome segregation SMC protein [Bdellovibrio bacteriovorus
          HD100]
          Length = 1195

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          ++IK + +  F+++     + FDA  T  VG NG GK+NI++A+ ++   +     R + 
Sbjct: 1  MRIKKIELIGFKSFKDRTVIHFDAGITGIVGPNGCGKSNIVDALMWVMGDQSAKDLRASQ 60

Query: 61 YADVTRIGSPSFF 73
            DV   G+  + 
Sbjct: 61 MTDVIFGGAEGYA 73


>gi|325091689|gb|EGC44999.1| DNA repair protein RAD18 [Ajellomyces capsulatus H88]
          Length = 1161

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 95/335 (28%), Gaps = 68/335 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++    G+     R  S   
Sbjct: 121 IERVDCYNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTALTLCLGGKASVTNRGQSLKS 180

Query: 64  VTRIGSPSFFSTFARVEGMEGLAD----------ISIKLETRDDRSVRCL----QINDVV 109
             + G  S  +   R++     A           I            +      ++    
Sbjct: 181 FIKEGKDSA-TIVVRIKNQGDSAYNPNEFGNSIIIERHFSRNGSSGFKIKSSSGRVVSTK 239

Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR--- 156
              +D +  +  +    P        +   + S    E+ +F      +  +D  +R   
Sbjct: 240 KSELDSITDYFALQIDNPMNVLSQDMARQFLSSSSPSEKYKFFVKGVQLEQLDQDYRLLE 299

Query: 157 ------------------------------RRMIDFERLMRGRNRLLT------EGYFDS 180
                                           + D    MR R R L       +     
Sbjct: 300 ESIDQTEAKLSIHLDQIKDLETNRNNARAKLALSDKNETMRARVRNLRAQMAWVQVEEQE 359

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               + +AQ+AE   KI     E+  A         +        L+    L+ + D+  
Sbjct: 360 KNRDAYDAQLAEATRKIVDLESEVAKADELYQSADREYGIAAEAVLAAKSELEAQADRGK 419

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
            A KE   + + + R++ +  R        ++  +
Sbjct: 420 VA-KESMNEIVKERRELQATQRTIRECLKTAESAI 453


>gi|313127260|ref|YP_004037530.1| condensin subunit smc [Halogeometricum borinquense DSM 11551]
 gi|312293625|gb|ADQ68085.1| condensin subunit Smc [Halogeometricum borinquense DSM 11551]
          Length = 1198

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK L +  F+++    R+ F    T+  G NG GK+NI++ + F   L+  RG R   
Sbjct: 1   MHIKELVLDGFKSFGRKTRIPFYEDFTVVTGPNGSGKSNIIDGVLFALGLARTRGIRAEK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
             D+    +P      +   G    A +++ L+  D +  R   IN
Sbjct: 61  LTDLIY--NPGHADAESERAGGTKEASVTVILDNSDGKLDRSQVIN 104


>gi|213404596|ref|XP_002173070.1| mitotic cohesin complex subunit Psm1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212001117|gb|EEB06777.1| mitotic cohesin complex subunit Psm1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 1232

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 31/196 (15%)

Query: 6   KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           ++  L +  F++Y   + +      T  +G NG GK+N+++AISF+   +    R ++  
Sbjct: 3   RLVRLEVENFKSYRGFQVIGPFYDFTSIIGPNGAGKSNLMDAISFVVGIKSSHLRSSNLK 62

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D+   G      +    +  +      +KL    D          V      E +   R 
Sbjct: 63  DLIYRGRILSSQSQESSQLEQSPQSAFVKLVFALDDGREVSFKRSVSAAGASEYSIDGRT 122

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
                                           + + + +   L++ RN L+ +G  ++  
Sbjct: 123 VSFS---------------------------EYTKALEEQNILVKARNFLVFQGDIEAIA 155

Query: 183 CSSIEAQMAELGVKIN 198
             S +  +  L  +I+
Sbjct: 156 AQSPDD-LCRLIEQIS 170


>gi|45594277|gb|AAS68515.1| structural maintenance of chromosomes 1 protein [Arabidopsis
           thaliana]
          Length = 1218

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 17/151 (11%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           KI  L +  F++Y     +      T  +G NG GK+N+++AISF+   R    R +   
Sbjct: 10  KILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLK 69

Query: 63  DVT-----RIGSPSFFSTFARV-----EGMEGLADISI----KLETRDDRSVRCLQINDV 108
           D+      R         F R+     +G+E     SI      E R D  V  L   + 
Sbjct: 70  DLIYAFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSAGGSEYRIDNRVVNLDEYNG 129

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSME 139
            +R +  L K          ++ I S    E
Sbjct: 130 KLRSLGILVKARNFLVFQGDVESIASKNPKE 160


>gi|312952556|ref|ZP_07771421.1| RecF/RecN/SMC protein [Enterococcus faecalis TX0102]
 gi|310629457|gb|EFQ12740.1| RecF/RecN/SMC protein [Enterococcus faecalis TX0102]
 gi|315153433|gb|EFT97449.1| RecF/RecN/SMC protein [Enterococcus faecalis TX0031]
          Length = 486

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 3  NRIKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
          N++ I  L +  F+++     + F      FVG+N  GKT I +A+ FL      R   Y
Sbjct: 4  NQLYISKLILKNFKSFEGEHVITFTRGINFFVGNNNSGKTTIFKAVEFL------RNGKY 57

Query: 62 AD-VTRIGSPSF 72
           D +   G  + 
Sbjct: 58 EDSLITSGKENC 69



 Score = 39.9 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIF 346
           TG Q+ + + I   ++ + +          +DE    L    ++ L      I   SQ+F
Sbjct: 258 TGMQRALAMSIIQVYSEITNAENSKQLFFFIDEPETFLHPVAQDKLIEAFEKISKNSQVF 317

Query: 347 MTGTDKSVFDSLNETAKFMRI 367
           +T     +    N T  F++I
Sbjct: 318 ITTHSPYLLKKYNSTNHFIKI 338


>gi|257059354|ref|YP_003137242.1| chromosome segregation protein SMC [Cyanothece sp. PCC 8802]
 gi|256589520|gb|ACV00407.1| chromosome segregation protein SMC [Cyanothece sp. PCC 8802]
          Length = 1226

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + IK + +S F+++  +  + F    T+  G NG GK+NIL+A+ F   L+  +G R   
Sbjct: 2  VHIKRIELSHFKSFGGTTSIPFLTGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61

Query: 61 YADVTRIG-------SPSFFSTFARVEGMEGLADIS 89
            D+             +  S    V  +E L + S
Sbjct: 62 LPDLVNHNHSNNRKTQEASVSVTFDVSDLEDLQEFS 97


>gi|225874788|ref|YP_002756247.1| hypothetical protein ACP_3245 [Acidobacterium capsulatum ATCC
           51196]
 gi|225792214|gb|ACO32304.1| conserved hypothetical protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 615

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 120/392 (30%), Gaps = 58/392 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA---- 59
           ++++ L I+ FR  A   + F   HT+ VG N +GK+ I EA+   L P R FRR     
Sbjct: 1   MRVRRLKITHFRGVAEGSVDFT-GHTLLVGGNNIGKSTICEALDLVLGPERLFRRPVVDE 59

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE---- 115
                 R           R+E    L D+S +   R     R  + +D     VDE    
Sbjct: 60  HDFHCGRYLDKDGNPIEIRIEAT--LIDLSDEAHRRFRGHAR--RWDDKKCSFVDEEPEG 115

Query: 116 --LNKHLRISWLVPSMDRIFSGL-SMERRRFLDRMVFAIDPRHRRRMID----------- 161
                +  + W +P    IF G    +   F+    F         + D           
Sbjct: 116 VDKADNDGVIWALP---LIFIGRYDKDEDDFIGNTFFDHPTGEADALDDELENKLGSGRV 172

Query: 162 -FERLMRG----------RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
            F R  +           R           S   S+        V++    +  + AL  
Sbjct: 173 PFTRAHKRLCGFVFLRTLRTGSRALSLQRGSLLDSVLRLGGSGSVEMWQDTLGRLQALDP 232

Query: 211 LIMEYVQ-KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
            I +  Q K+    I+  +  F++             +A  L      + +       P 
Sbjct: 233 AIGDIAQLKQIRDEIRARMGRFVNLADGDESTGF---FASDLTREHVREVVRLFIAAQPG 289

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           +  +               TG   +++  +    A L    +    I  ++E    L   
Sbjct: 290 KHLVPFARLG---------TGSINLLVFALLTFIAELKDRQS---VIFAMEEPEIALPPH 337

Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
            +  + R V     Q  +T     V +    T
Sbjct: 338 TQRRVTRFVLAEMGQSIVTSHSPYVIEQFEPT 369


>gi|225438119|ref|XP_002273034.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1308

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 9/128 (7%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           KI  L +  F++Y     +      T  +G NG GK+N+++AISF+   R    R A   
Sbjct: 9   KIHRLELENFKSYKGFQTIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLK 68

Query: 63  DVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           D+      +         F R+    G                   +I+  ++   DE N
Sbjct: 69  DLIYAFDDKEKEQKGRRAFVRLVYQLGNGSELQFTRAITSSGGSEYRIDGKMV-SWDEYN 127

Query: 118 KHLRISWL 125
             L+   +
Sbjct: 128 GKLKSLGI 135


>gi|167648328|ref|YP_001685991.1| chromosome segregation protein SMC [Caulobacter sp. K31]
 gi|167350758|gb|ABZ73493.1| chromosome segregation protein SMC [Caulobacter sp. K31]
          Length = 1153

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           ++ + L +S F+++        +   T  VG NG GK+N+LEA+ ++         R   
Sbjct: 1   MQFQRLRLSGFKSFVEPTEFRIEPGLTGVVGPNGCGKSNLLEALRWVMGANSAKAMRAGG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLA------DISIKLETRDDRS-VRCLQINDV 108
             DV   G     + +       ++  E  A      D  +++  R DR      +IN  
Sbjct: 61  MDDVIFAGSGNRPARNHADVTLTIDNAERTAPAQFNDDPVLEVVRRIDRGEGSTYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      +       RRR L+
Sbjct: 121 EVRARDVQLLFADASTGANSPALVRQGQISELIGAKPQNRRRILE 165


>gi|289626388|ref|ZP_06459342.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649543|ref|ZP_06480886.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866313|gb|EGH01022.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 1162

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++      L G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEIGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|255318626|ref|ZP_05359857.1| chromosome segregation protein SMC [Acinetobacter radioresistens
           SK82]
 gi|262379148|ref|ZP_06072304.1| chromosome segregation protein SMC [Acinetobacter radioresistens
           SH164]
 gi|255304308|gb|EET83494.1| chromosome segregation protein SMC [Acinetobacter radioresistens
           SK82]
 gi|262298605|gb|EEY86518.1| chromosome segregation protein SMC [Acinetobacter radioresistens
           SH164]
          Length = 1149

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/294 (17%), Positives = 103/294 (35%), Gaps = 52/294 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++A    L F    +  VG NG GK+N+++AI ++   S  R  R  S
Sbjct: 1   MRLSSLKLSGFKSFADSTTLNFRDSRSAVVGPNGCGKSNVIDAIRWVMGESSARQLRGGS 60

Query: 61  YADVTRIGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
             DV   G+              F +T+ ++ G     +  + +  + +R  +    +N 
Sbjct: 61  MQDVIFTGTAKRKPVGMASVELRFDNTYGKLGGAYNAYN-ELAVRRQVNREGKSEYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   R+F   +        RRR 
Sbjct: 120 TRCRRRDITDIFLGTGLGPRSYAIIEQGMINRLVDAKPDEMRVFIEEAAGISRYQARRR- 178

Query: 144 LDRMVFAIDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
               +  ++    + +   E +   ++ + + L +    +     +E ++  L ++I   
Sbjct: 179 --ETLLHLEHT-TQNLSRLEDIALELKSQLKSLKKQAETAVQYKELENRIRTLKIEILSV 235

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
           + E    L     EY  + N       L        + +  +  E + + L   
Sbjct: 236 QCERSQHLQ---QEYTLQMNELGESFKLVRSELHTLEHNLTSTSELFQRLLQQS 286



 Score = 39.5 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              +  ++A  S GE+ +  + +  A  RL       AP  +LDE+ A LD+        +
Sbjct: 1039 GKRNSSLALLSGGEKALTALALVFAIFRL-----NPAPFCVLDEVDAPLDDANVQRFCNL 1093

Query: 338  VTDIGSQI 345
            V ++  Q+
Sbjct: 1094 VKELSEQV 1101


>gi|218782597|ref|YP_002433915.1| SMC domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218763981|gb|ACL06447.1| SMC domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 572

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          ++I+ + I  FR                +G    GK+ +++AI +    R  R A + D
Sbjct: 1  MRIRKIEILNFRCIKRFFWCPSDGLNCLIGPGDSGKSTVIDAIDYCLGAR--RTAQFTD 57


>gi|15965918|ref|NP_386271.1| DNA repair protein [Sinorhizobium meliloti 1021]
 gi|307308228|ref|ZP_07587937.1| DNA repair protein RecN [Sinorhizobium meliloti BL225C]
 gi|307319695|ref|ZP_07599120.1| DNA repair protein RecN [Sinorhizobium meliloti AK83]
 gi|15075187|emb|CAC46744.1| Probable DNA repair protein [Sinorhizobium meliloti 1021]
 gi|306894626|gb|EFN25387.1| DNA repair protein RecN [Sinorhizobium meliloti AK83]
 gi|306901226|gb|EFN31832.1| DNA repair protein RecN [Sinorhizobium meliloti BL225C]
          Length = 557

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 87/277 (31%), Gaps = 45/277 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ I+ + +        L L FDA  ++  G+ G GK+ +L+++S    GRG     
Sbjct: 1   MLAQLAIRDIVL-----IERLDLSFDAGLSVLTGETGAGKSILLDSLSLALGGRG----- 50

Query: 61  YADVTRIGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
              + R G                    F R  G++   D+  +     D   +    + 
Sbjct: 51  DGSLVRHGEDRGQVTAVFDVPAGHTARLFLRENGIDDDGDLIFRRVQSADGRTKAFINDQ 110

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDF 162
            V   +        +       DR         R  LD      +         R   D 
Sbjct: 111 PVSVQLMRQVGQTLVEIHGQHDDRALVDTDA-HRTLLDAFGGTTEAAEDVAAFYRAWKDA 169

Query: 163 ERLM-RGRNR---------LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ER + + R +          L     +    S  + +  EL      AR+     ++  I
Sbjct: 170 ERCLKKHREKVEAAAREADYLRSSVEELETLSPRDGEEEELAEN--RARMMKAERIAGDI 227

Query: 213 MEYVQKENFPH----IKLSLTGFLDGKFDQSFCALKE 245
            E  +  N       +  SL   L+ K  ++   L+E
Sbjct: 228 SEASEFLNGNASPVPLIASLVRRLERKSHEAPGLLEE 264


>gi|331013368|gb|EGH93424.1| chromosome segregation protein SMC [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 1162

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++      L G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEIGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|311068115|ref|YP_003973038.1| chromosome segregation SMC protein [Bacillus atrophaeus 1942]
 gi|310868632|gb|ADP32107.1| chromosome segregation SMC protein [Bacillus atrophaeus 1942]
          Length = 1186

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K L++  F+++   + + F    T  VG NG GK+NI +AI   L     R  R   
Sbjct: 1  MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGK 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFAGSDS 71


>gi|296126603|ref|YP_003633855.1| ATPase [Brachyspira murdochii DSM 12563]
 gi|296018419|gb|ADG71656.1| ATPase-like protein [Brachyspira murdochii DSM 12563]
          Length = 354

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          + I+I  ++IS F+ +    +    +  +  G N VGK+N+LEA+   S    FR 
Sbjct: 2  SDIQIPNISISNFKCFKEFSIDCFKRFNLIFGKNSVGKSNLLEALYLYSNM--FRS 55


>gi|199597131|ref|ZP_03210563.1| Chromosome segregation ATPase [Lactobacillus rhamnosus HN001]
 gi|258508645|ref|YP_003171396.1| chromosome partition protein smc [Lactobacillus rhamnosus GG]
 gi|199591935|gb|EDZ00010.1| Chromosome segregation ATPase [Lactobacillus rhamnosus HN001]
 gi|257148572|emb|CAR87545.1| Chromosome partition protein smc [Lactobacillus rhamnosus GG]
 gi|259649951|dbj|BAI42113.1| chromosome segregation protein [Lactobacillus rhamnosus GG]
          Length = 1184

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +++K L I+ F+++A    + F +  T  VG NG GK+NI EAI +       +  R   
Sbjct: 1  MELKRLIINGFKSFADKTEIDFVSGLTGIVGPNGSGKSNITEAIRWALGEQSAKSLRGER 60

Query: 61 YADVTRIGSPS 71
            DV   G+ S
Sbjct: 61 MGDVIFAGTDS 71


>gi|322385060|ref|ZP_08058710.1| DNA repair protein RecN [Streptococcus cristatus ATCC 51100]
 gi|321270970|gb|EFX53880.1| DNA repair protein RecN [Streptococcus cristatus ATCC 51100]
          Length = 552

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G E   ++ I+ E          +IN  +I + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMINLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF----AIDPRHRRRMIDFERLMRGR 169
                   +  +    D+     S      LD         +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRSQLHIAMLDEFGSADFLHLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+          + ++  R  ++N
Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDIALHQERDRLLN 221


>gi|260911970|ref|ZP_05918534.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
 gi|260633917|gb|EEX52043.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
          str. F0295]
          Length = 658

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 5  IK---IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K   IK L++  F+   SL + F+   T   G NG+GKT I +A ++L  G+
Sbjct: 1  MKRIVIKKLSLVNFKGIRSLTIDFNEGVTTISGRNGLGKTTIFDAFTWLLFGK 53


>gi|49481867|gb|AAT66645.1| DNA repair and genetic recombination protein [Geobacillus
          stearothermophilus]
          Length = 573

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  GRG      ++  R
Sbjct: 2  LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SSEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G+       A +EG+
Sbjct: 57 FGAEK-----AEIEGL 67


>gi|329121098|ref|ZP_08249729.1| DNA repair protein RecN [Dialister micraerophilus DSM 19965]
 gi|327471260|gb|EGF16714.1| DNA repair protein RecN [Dialister micraerophilus DSM 19965]
          Length = 558

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 96/262 (36%), Gaps = 32/262 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+IS F     + +      T+F G+ G GK+ +++A+S L+  RG       D+ R
Sbjct: 2   LRSLHISNFAIIKDIEMELGDGVTVFTGETGSGKSILVDALSLLAGKRG-----SIDLIR 56

Query: 67  IGSPSF------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRV 112
            G   F             S  +  E  +   DI I  +        C  +N     ++ 
Sbjct: 57  SGEDFFCVEGIFSINKSIVSLLSEFEVNDDNEDIIISRKMNKSGKSTCT-VNGFFCSVKK 115

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG---- 168
           ++E+ K L           + +        F  R++       +    ++ ++       
Sbjct: 116 LEEIGKKLFRFHEQFDNTDLLNSD------FCKRIIDNFSVEIKVAWNEYSKIYSDWKTT 169

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
           ++++      +  +   ++  + E   +I  AR+  +   S +  +    +N+  I+  L
Sbjct: 170 KSKIEKLNKEEQEYQRKLDVLLWET-QQIEDARI-CLEEDSKIAQKLSVLQNYERIQDGL 227

Query: 229 TGFLDGKFDQSFCALKEEYAKK 250
               +   +++    K   A+K
Sbjct: 228 QTVSNILSEENGIQDKLSVAEK 249


>gi|229552451|ref|ZP_04441176.1| SMC structural maintenance of chromosomes partitioning protein
          [Lactobacillus rhamnosus LMS2-1]
 gi|229314188|gb|EEN80161.1| SMC structural maintenance of chromosomes partitioning protein
          [Lactobacillus rhamnosus LMS2-1]
          Length = 1184

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +++K L I+ F+++A    + F +  T  VG NG GK+NI EAI +       +  R   
Sbjct: 1  MELKRLIINGFKSFADKTEIDFVSGLTGIVGPNGSGKSNITEAIRWALGEQSAKSLRGER 60

Query: 61 YADVTRIGSPS 71
            DV   G+ S
Sbjct: 61 MGDVIFAGTDS 71


>gi|209522913|ref|ZP_03271470.1| ATPase-like protein [Arthrospira maxima CS-328]
 gi|209496500|gb|EDZ96798.1| ATPase-like protein [Arthrospira maxima CS-328]
          Length = 364

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          K + +  FR +  L +    +  +  G N +GKT +LEAI  ++    
Sbjct: 3  KSITVKNFRCFEDLTISQIERVNLIGGMNNIGKTALLEAIYLMTSLGS 50


>gi|119467308|ref|XP_001257460.1| structural maintenance of chromosomes 5 smc5 [Neosartorya fischeri
           NRRL 181]
 gi|119405612|gb|EAW15563.1| structural maintenance of chromosomes 5 smc5 [Neosartorya fischeri
           NRRL 181]
          Length = 1192

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 69/240 (28%), Gaps = 18/240 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + +++F  Y S       +  + +G NG GK+ ++ AI   L  G     R     
Sbjct: 109 AILRIKVTDFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPG 168

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-------VVDE 115
           +  + G           +G     +  I    + + +     IN                
Sbjct: 169 EFVKHGCREASIEIELAKGPGLRKNPVIGRTIKREGNKSSFTINGKQASLAQVKKFAQSF 228

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
             +   +   +P                      A  P         ++L   + +L  +
Sbjct: 229 AIQIDNLCQFLPQDKVSEFAALTPVELLNSTQRAAAGPEMIEWHESLKKLRAEQKKLQLD 288

Query: 176 GYFDSSWCSSIE--AQMAELGVKINIARV------EMINALSSLIMEYVQKENFPHIKLS 227
              D    +++E   +M  + V+    R       EM+  L  +I     +      K+ 
Sbjct: 289 NQSDKDLLANLENRQEMQRVDVERMRQRAQIKRKIEMLEHLRPVIHYREARNELNRKKIE 348


>gi|26553935|ref|NP_757869.1| structural maintenance of chromosomes SMC superfamily proteins
           [Mycoplasma penetrans HF-2]
 gi|26453943|dbj|BAC44273.1| structural maintenance of chromosomes SMC superfamily proteins
           [Mycoplasma penetrans HF-2]
          Length = 984

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 71/218 (32%), Gaps = 29/218 (13%)

Query: 7   IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62
           +K      F+++A    L FD+     VG NG GK+N+++AI   L     +  R     
Sbjct: 4   LKKFEAIGFKSFADFTKLNFDSTMIGIVGPNGAGKSNVIDAIKWVLGEQSIKSLRGKKSD 63

Query: 63  DVTRIGSPSFFSTF----------ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           D+   GS S  +             + +      ++S+  +           IN  + R 
Sbjct: 64  DIIFHGSKSKEACEYAQVTLTFDNTKKQLHFDGDEVSVSRKLHRGNGNNEYYINGQLTR- 122

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRMID 161
           + +++     + L      I S             ERR   +    +     +    +  
Sbjct: 123 LKDIHDIFSDTGLSKGSLGIISQGTVNWFADSKPEERRTIFEEAAGISKYIRKKEESLRQ 182

Query: 162 FERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
            ER    +   N L  E Y D        ++  E   K
Sbjct: 183 LERTQNNLNRVNDLTKELYKDIKKLEVQASKAKEYSEK 220


>gi|148544276|ref|YP_001271646.1| AAA ATPase [Lactobacillus reuteri DSM 20016]
 gi|184153654|ref|YP_001841995.1| hypothetical protein LAR_0999 [Lactobacillus reuteri JCM 1112]
 gi|227364993|ref|ZP_03849033.1| AAA ATPase [Lactobacillus reuteri MM2-3]
 gi|325681695|ref|ZP_08161215.1| AAA ATPase [Lactobacillus reuteri MM4-1A]
 gi|148531310|gb|ABQ83309.1| AAA ATPase [Lactobacillus reuteri DSM 20016]
 gi|183224998|dbj|BAG25515.1| hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227069963|gb|EEI08346.1| AAA ATPase [Lactobacillus reuteri MM2-3]
 gi|324979007|gb|EGC15954.1| AAA ATPase [Lactobacillus reuteri MM4-1A]
          Length = 537

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          + +  L +  F+++  L+ + F+    I VG+NGVGKT +++A+  +  G  F
Sbjct: 1  MYLNELYLYNFKSFKGLQKITFNRNKNILVGNNGVGKTTVIQALRLILKGSSF 53


>gi|307211152|gb|EFN87370.1| Structural maintenance of chromosomes protein 6 [Harpegnathos
           saltator]
          Length = 1006

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 68/222 (30%), Gaps = 34/222 (15%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           ++K + +  F  + +L +  +      VG NG GK+ IL A++     R +   R  S  
Sbjct: 40  RVKNIRLRNFMCHDALEIKLNENVNFIVGRNGSGKSAILTALTVGLGARAYITNRGTSLK 99

Query: 63  DVTRIGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRSVRCLQINDVVIRV--- 112
              ++G  S           +           I+I        S +       +I     
Sbjct: 100 KFIKVGQTSAIIEITLTNKGDAAYKPETYGDVITIVRTIGPTSSYKIKNWRGEIISTKRD 159

Query: 113 -VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRMI- 160
            +D++   + I    P        S   + S  S E+        ++  I+  +   +  
Sbjct: 160 ELDDIISSMNIQIDNPISILNQDVSRTFLISSKSEEKYNLFMKATLLDIIENNYVEALQI 219

Query: 161 ---------DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
                     +   +      + +   D      ++   AEL
Sbjct: 220 CMEENEKLKQYYEALSQVKAEIEKLKDDIQKMEQMDESRAEL 261


>gi|88601461|ref|YP_501639.1| putative RecF protein [Methanospirillum hungatei JF-1]
 gi|88186923|gb|ABD39920.1| putative RecF protein [Methanospirillum hungatei JF-1]
          Length = 132

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 16/82 (19%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +KI  L++  FR++  +    ++   I +G NG GK+N+L                  D+
Sbjct: 1  MKICSLSLKGFRSFKDISWSPES-LNIVIGPNGSGKSNLL---------------KLLDM 44

Query: 65 TRIGSPSFFSTFARVEGMEGLA 86
           R+ +   F  +   EG     
Sbjct: 45 IRLYADGEFRDYVLREGGRDQI 66


>gi|16329963|ref|NP_440691.1| chromosome segregation protein SMC1 [Synechocystis sp. PCC 6803]
 gi|1652449|dbj|BAA17371.1| chromosome segregation protein SMC1 [Synechocystis sp. PCC 6803]
          Length = 1200

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 109/308 (35%), Gaps = 64/308 (20%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + +K + +S F+++  +  + F    T+  G NG GK+NIL+A+ F   L+  +G R   
Sbjct: 2   VYVKRIELSHFKSFGGTTAIPFLPGFTVVSGPNGSGKSNILDALLFCLGLATSKGMRAER 61

Query: 61  YADVT-------RIGSPSFFSTFARVEGMEGLAD-----------ISIKLETRDDRSVRC 102
             D+        R  S +  S    +   E L++             I  E    R ++ 
Sbjct: 62  LPDLVNNTFKGNRGSSEASVSVTFELHDGENLSEPGANHNGNGNGAKISKEWTVTRRLKV 121

Query: 103 LQ---------INDVVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFL 144
            +         IN      V EL++ L    + P    I             S ERR  +
Sbjct: 122 TKGGNYSSNYYINGETA-TVTELHEQLNELRIYPEGYNIVLQGDVTRIITMNSKERREII 180

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV-- 202
           D +    +           ++++ +   LTE       C  I  ++     ++   R   
Sbjct: 181 DELAGVAEFD--------RKIVKTK-ETLTEVQDREERCQIIATELERTLERLAADRQKA 231

Query: 203 EMINALSSLIMEY------VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           E   AL   + E       +Q +     +  L G L+   +QS      +  ++  D R 
Sbjct: 232 EKYQALRQQVQEKQGWAKVIQYKAVEQQRQKLWGQLERDREQS------QQIQQALDQRS 285

Query: 257 MDSMSRRT 264
               +++T
Sbjct: 286 QAIQTQQT 293


>gi|225868185|ref|YP_002744133.1| chromosome partition protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701461|emb|CAW98598.1| putative chromosome partition protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 1183

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 96/280 (34%), Gaps = 30/280 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A    ++FD   T  VG NG GK+N+ E++ +    +  +  R   
Sbjct: 1   MFLKEIQMQGFKSFADKTRIIFDKGVTAVVGPNGSGKSNVTESLRWALGEASAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGME---GLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++      ++  +     A   I++E    R+      I+   +R
Sbjct: 61  MPDVIFAGTEHRSPLNYAEVAVVLDNSDAFIKNAQKEIRVERHIYRNGDSDYLIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +             ++ ++
Sbjct: 121 LRDIHELFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
              +     L +   +      I  ++      +          L+        + +   
Sbjct: 172 TRKKETQTKLNQTQDNLDRLDDIIYELEHQAGPLERQAKTARQFLALDADRKQLQLDILV 231

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
             +          +++  AL+E+ A      + +++ + R
Sbjct: 232 KDIEQDRMEQEAQEKALAALREDLAAYHRKRQSLEAENHR 271


>gi|172035278|ref|YP_001801779.1| putative exonuclease SbcC [Cyanothece sp. ATCC 51142]
 gi|171696732|gb|ACB49713.1| putative exonuclease SbcC [Cyanothece sp. ATCC 51142]
          Length = 1008

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 9   FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            L +  F +Y    L F   HT    G NG GK+++LEAI++   G+  R AS  D+   
Sbjct: 5   QLTLKNFLSYRETVLDFRGLHTACICGANGAGKSSLLEAITWAIWGKS-RTASDEDIIHT 63

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
            +      F  +          I    +  RS 
Sbjct: 64  TAQYVRVDFEFIS---YEQSYRIIRSRQRGRSN 93


>gi|219666706|ref|YP_002457141.1| ATP-dependent endonuclease of the OLD family-like protein
          [Desulfitobacterium hafniense DCB-2]
 gi|219536966|gb|ACL18705.1| ATP-dependent endonuclease of the OLD family-like protein
          [Desulfitobacterium hafniense DCB-2]
          Length = 601

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          ++I  + +S +RN   + ++F       +G+N +GK+N L  I  +  G+GF
Sbjct: 1  MRIFCVKVSNYRNIDGITVIFHPDCNYIIGENNLGKSNFLSLIGTVCAGKGF 52


>gi|321315360|ref|YP_004207647.1| chromosome partition protein SMC [Bacillus subtilis BSn5]
 gi|320021634|gb|ADV96620.1| chromosome partition protein SMC [Bacillus subtilis BSn5]
          Length = 1186

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K L++  F+++   + + F    T  VG NG GK+NI +AI ++      R  R   
Sbjct: 1  MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGK 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFAGSDS 71


>gi|296331169|ref|ZP_06873643.1| chromosome segregation SMC protein [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305674325|ref|YP_003865997.1| chromosome condensation and segregation SMC ATPase [Bacillus
          subtilis subsp. spizizenii str. W23]
 gi|296151813|gb|EFG92688.1| chromosome segregation SMC protein [Bacillus subtilis subsp.
          spizizenii ATCC 6633]
 gi|305412569|gb|ADM37688.1| chromosome condensation and segregation SMC ATPase [Bacillus
          subtilis subsp. spizizenii str. W23]
          Length = 1186

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K L++  F+++   + + F    T  VG NG GK+NI +AI   L     R  R   
Sbjct: 1  MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGK 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFAGSDS 71


>gi|289523384|ref|ZP_06440238.1| putative RecF/RecN/SMC N domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503076|gb|EFD24240.1| putative RecF/RecN/SMC N domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 1140

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 77/217 (35%), Gaps = 29/217 (13%)

Query: 1   MTNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---F 56
           M   + I+ + +  F+++   + +    ++T+  G NG GK+NIL+A+ +    +     
Sbjct: 1   MEISLFIERVALKGFKSFGEQVDIELSEKYTVIAGPNGSGKSNILDAVRWALGEQSPSRL 60

Query: 57  RRASYADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD- 114
           R +  +D+   GSPS   +  ARV  +          +   D S     ++   +++ + 
Sbjct: 61  RISKQSDLLFQGSPSRPPAREARVSFVINDKGKLKAFKRVLDESGSSFFVDGKKVKLYEM 120

Query: 115 ----ELNKHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
                L     I +       +         ERR  L+ +           +  + R  +
Sbjct: 121 EEEKRLLGLEGIDFAFIGQGEVLEAIKQKPAERRENLEVLFG---------ISQYRR--K 169

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204
                L     D         ++  L  ++   R ++
Sbjct: 170 REEAFLKLIRADEEAL-----RLKTLIDELKRRRSDI 201


>gi|258539822|ref|YP_003174321.1| chromosome partition protein smc [Lactobacillus rhamnosus Lc 705]
 gi|257151498|emb|CAR90470.1| Chromosome partition protein smc [Lactobacillus rhamnosus Lc 705]
          Length = 1184

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +++K L I+ F+++A    + F +  T  VG NG GK+NI EAI +       +  R   
Sbjct: 1  MELKRLIINGFKSFADKTEIDFVSGLTGIVGPNGSGKSNITEAIRWALGEQSAKSLRGER 60

Query: 61 YADVTRIGSPS 71
            DV   G+ S
Sbjct: 61 MGDVIFAGTDS 71


>gi|221309469|ref|ZP_03591316.1| chromosome segregation SMC protein homolg [Bacillus subtilis
          subsp. subtilis str. 168]
 gi|221313794|ref|ZP_03595599.1| chromosome segregation SMC protein homolg [Bacillus subtilis
          subsp. subtilis str. NCIB 3610]
 gi|221318718|ref|ZP_03600012.1| chromosome segregation SMC protein homolg [Bacillus subtilis
          subsp. subtilis str. JH642]
 gi|221322989|ref|ZP_03604283.1| chromosome segregation SMC protein homolg [Bacillus subtilis
          subsp. subtilis str. SMY]
 gi|255767364|ref|NP_389476.2| chromosome condensation and segregation SMC ATPase [Bacillus
          subtilis subsp. subtilis str. 168]
 gi|239938850|sp|P51834|SMC_BACSU RecName: Full=Chromosome partition protein smc
 gi|225184991|emb|CAB13467.2| chromosome condensation and segregation SMC ATPase [Bacillus
          subtilis subsp. subtilis str. 168]
          Length = 1186

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K L++  F+++   + + F    T  VG NG GK+NI +AI   L     R  R   
Sbjct: 1  MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGK 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFAGSDS 71


>gi|206579854|ref|YP_002237036.1| OLD family TOPRIM nucleotidyl transferase/hydrolase domain
          protein [Klebsiella pneumoniae 342]
 gi|206568912|gb|ACI10688.1| OLD family TOPRIM nucleotidyl transferase/hydrolase domain
          protein [Klebsiella pneumoniae 342]
          Length = 583

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRASY 61
          + +  L IS FR+   + +      T+ VG+N  GK+N+++AI  L+    GR  R    
Sbjct: 1  MYLGSLKISRFRSCDDVTVSLRPDLTVLVGENNGGKSNVVDAIRLLTLPLSGRRERYPED 60

Query: 62 ADVTRIGSPSFFSTFARVEGMEGL 85
           DV R  +   F      +G+   
Sbjct: 61 EDVRRYSTVPSFQIEGAFQGLSDT 84


>gi|302185112|ref|ZP_07261785.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           syringae 642]
          Length = 1162

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++      L G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|209883314|ref|YP_002287171.1| ATP-dependent endonuclease family protein [Oligotropha
           carboxidovorans OM5]
 gi|209871510|gb|ACI91306.1| ATP-dependent endonuclease family protein [Oligotropha
           carboxidovorans OM5]
          Length = 615

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 2/107 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           ++++ L I+ FR  +   + FD  HT+ VG N +GK+ I EA+   L P R FRR    +
Sbjct: 1   MRVRRLKITNFRGISQGSVDFD-GHTLLVGGNNIGKSTICEALDLVLGPERLFRRPVIDE 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
                        A +E       + +  E +        + ND   
Sbjct: 60  HDFHCGKYLDDDGAPIEVRIEAILVDLSDEAKRRFCGHLRRWNDTAC 106


>gi|163790193|ref|ZP_02184626.1| DNA repair protein RecN [Carnobacterium sp. AT7]
 gi|159874468|gb|EDP68539.1| DNA repair protein RecN [Carnobacterium sp. AT7]
          Length = 572

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 37/212 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F    +L L F+   T+  G+ G GK+ I++A+  L+ GRG      ++  R
Sbjct: 2   LQELTIKDFAIIQNLNLSFNQGMTVLTGETGAGKSIIIDAVGLLAGGRG-----SSEFIR 56

Query: 67  IGS-----PSFFSTFAR-----------VEGMEGLADISIKLETRDDRSVRCLQIND--V 108
            G+      + FS               ++  E    I   +           +IN   V
Sbjct: 57  HGATKCVLEALFSLEGNTLTYELLKAYDIDSDEETVIIQRDIHRSGKN---VCRINGRLV 113

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERR----RFLDRMVFAIDPRHRRRMIDFER 164
            I  +  + + +           + +            F D+ +  +    +     +++
Sbjct: 114 TIATLRLIGESIIDIHGQNEHQELMN--PDRHLNMLDHFGDKELIVLKNDFKETYTQYKK 171

Query: 165 LMR-----GRNRLLTEGYFDSSWCSSIEAQMA 191
           + +                D     + E +MA
Sbjct: 172 VEKAFHKWQNGEQQLAQRLDMLQYQTNEIEMA 203


>gi|118083143|ref|XP_416467.2| PREDICTED: similar to OTTHUMP00000028953 [Gallus gallus]
          Length = 1243

 Score = 55.3 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 117/316 (37%), Gaps = 45/316 (14%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63
           +K L + +F+++     +    +    +G NG GK+NI++A+SF+   +    R  S  +
Sbjct: 13  LKLLMVKDFKSWRGEQLIGPFMRFNCIIGPNGSGKSNIMDAVSFVLCEKISNLRVKSVRE 72

Query: 64  VTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHL 120
           +   G+      S+ A V+ +    D   K  +R  R      I ND  I     +++  
Sbjct: 73  LI-HGAHVGKPVSSTASVKIVYCEEDGEEKTFSRVIRDGCSEYIFNDKSITRSAYISELE 131

Query: 121 RISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
           +I  LV + + +               ER +  +++  +   ++       ++ M+    
Sbjct: 132 KIGILVKARNCLIFQGTVESIAMKKPKERTQLFEQISNSW--QYAEEYERKKKKMQQAEE 189

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                Y      ++   Q A++  +       ++  L++              ++ L  F
Sbjct: 190 DAHFNYNKKKNIAAERKQ-AKVEKEEAEHYQMLVRELNAN-------------RVQLQLF 235

Query: 232 LDGKFDQSFCALKEEYAKKLFDGR-KMD---------SMSRRTLIGPHRSDLIVDYCDKA 281
                ++S  +LKE   +K  + R K D            ++ L   +R    +   ++ 
Sbjct: 236 QLYHNERSIESLKESLDEKNMEARIKKDSLSTAEDTFRAKKKVLGVLNRDQQQM---ERE 292

Query: 282 ITIAHGSTGEQKVVLV 297
           +     S  +QK + +
Sbjct: 293 MKTLQASLIQQKALYI 308


>gi|300854471|ref|YP_003779455.1| putative chromosome segregation protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300434586|gb|ADK14353.1| predicted chromosome segregation protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 1187

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++A    L+F    T  VG NG GK+NI +AI   L     +  R   
Sbjct: 1   MFLKNIEIRGFKSFADKTELIFKGGVTSIVGPNGSGKSNISDAIKWVLGEQSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+              +   +    I    + +  R  RS      IN+   R
Sbjct: 61  MEDVIFAGTQYRKPVGLCQVSLTLNNEDKKLPIDYSDVTVSRRLYRSGESEYYINNTQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + +          +D + SG   +RR  L+
Sbjct: 121 LKDVNELFMDTGIGREGYSIIGQGKIDALLSGKPEDRRSVLE 162


>gi|312864737|ref|ZP_07724968.1| chromosome segregation protein SMC [Streptococcus downei F0415]
 gi|311099864|gb|EFQ58077.1| chromosome segregation protein SMC [Streptococcus downei F0415]
          Length = 1179

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A    + FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEMQGFKSFADKTRIEFDRGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLA---DISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+       F      ++  +         I++E    R+      I+   +R
Sbjct: 61  MPDVIFAGTQDRSPLNFSQVTVVLDNTDNFIKDSGDEIRVERHIYRNGDSDYLIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    ERR   +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNSRPEERRAIFE 162


>gi|225554862|gb|EEH03156.1| DNA repair protein [Ajellomyces capsulatus G186AR]
          Length = 1161

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 95/335 (28%), Gaps = 68/335 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++    G+     R  S   
Sbjct: 121 IERVDCYNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTALTLCLGGKASVTNRGQSLKS 180

Query: 64  VTRIGSPSFFSTFARVEGMEGLAD----------ISIKLETRDDRSVRCL----QINDVV 109
             + G  S  +   R++     A           I            +      ++    
Sbjct: 181 FIKEGKDSA-TIVVRIKNQGDSAYNPNEFGNSIIIERHFSRNGSSGFKIKSSSGRVVSTK 239

Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR--- 156
              +D +  +  +    P        +   + S    E+ +F      +  +D  +R   
Sbjct: 240 KSELDSITDYFALQIDNPMNVLSQDMARQFLSSSSPSEKYKFFVKGVQLEQLDQDYRLLE 299

Query: 157 ------------------------------RRMIDFERLMRGRNRLLT------EGYFDS 180
                                           + D    MR R R L       +     
Sbjct: 300 ESIDQTEAKLSIHLDQIKDLETNRNNARAKLALSDKNETMRARVRNLRAQMAWVQVEEQE 359

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               + +AQ+AE   KI     E+  A         +        L+    L+ + D+  
Sbjct: 360 KNRDAYDAQLAEATRKIADLESEVAKADELYQSADREYGIAAEAVLAAKSELEAQADRGK 419

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
            A KE   + + + R++ +  R        ++  +
Sbjct: 420 VA-KESMNEIVKERRELQATQRTIRECLKTAESAI 453


>gi|330897712|gb|EGH29131.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 1162

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++      L G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|291540130|emb|CBL13241.1| hypothetical protein RO1_28330 [Roseburia intestinalis XB6B4]
          Length = 79

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KIK L ++ F  + +  + +     I  G+N  GKT +L+ +  L
Sbjct: 1  MKIKKLTLNNFMAFENAEINWSDNINIICGENSTGKTTLLKVMYSL 46


>gi|150390511|ref|YP_001320560.1| chromosome segregation protein SMC [Alkaliphilus metalliredigens
          QYMF]
 gi|149950373|gb|ABR48901.1| chromosome segregation protein SMC [Alkaliphilus metalliredigens
          QYMF]
          Length = 1194

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K L I  F+++A+ + + F+   T  VG NG GK+NI ++I   L     +  R + 
Sbjct: 1  MYLKRLEIQGFKSFANKIEMNFEQGFTAVVGPNGSGKSNISDSIRWVLGEQSAKSLRGSK 60

Query: 61 YADVTRIGSP 70
            D+   G+ 
Sbjct: 61 MEDIIFAGTA 70


>gi|117923881|ref|YP_864498.1| DNA replication and repair protein RecF [Magnetococcus sp. MC-1]
 gi|117607637|gb|ABK43092.1| DNA replication and repair protein RecF [Magnetococcus sp. MC-1]
          Length = 340

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
            L +S F  + SL L F     +FVG NG GKT++++ +  L
Sbjct: 3  TRLTLSNFTVFESLDLTFSPGINVFVGANGTGKTHLMKLLYAL 45


>gi|304436510|ref|ZP_07396484.1| possible chromosome segregation protein Smc [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370556|gb|EFM24207.1| possible chromosome segregation protein Smc [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 1186

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 99/318 (31%), Gaps = 42/318 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++K L    F+++   + + FD   T  VG NG GK+NI +A+ ++      R  R   
Sbjct: 1   MQLKRLEAYGFKSFAERIVVQFDQGITAVVGPNGSGKSNITDAVRWVLGEQNIRMLRGLR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             D+   GS      S        +  +    I  +      R  R     + +ND   R
Sbjct: 61  AEDIIFAGSSARRALSVAEVILVFDNTDKTLPIDYEEVVVKRRLYRNGDSEIYLNDSRCR 120

Query: 112 VVDEL-------NKHLRISWL-VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D           H  +S +    ++ I      +RR F D             +  + 
Sbjct: 121 IKDIYQLFADTGIGHDGMSIIGQNRLNDILDSRPEDRRVFFDETAG---------ITKYR 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
              +   R L +   D    S            I  A+   +  LS    +  Q      
Sbjct: 172 TRKQEALRKLRDNDTDLVRLS-----------DIMHAQATELQPLSQQAEKTKQFRGLDS 220

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            + S          +S    +E   + L    + +  + +           ++    AI 
Sbjct: 221 ERRSYQLTALVHQHESLQKEQESADRDLHVHEEAEIRAMQERKEKEDQKTALEEKMAAID 280

Query: 284 IAHGSTGEQKVVLVGIFL 301
           +  G   EQK   +   L
Sbjct: 281 LRMGEQ-EQKSTELQSKL 297


>gi|291484145|dbj|BAI85220.1| chromosome segregation SMC protein homologue [Bacillus subtilis
          subsp. natto BEST195]
          Length = 1186

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K L++  F+++   + + F    T  VG NG GK+NI +AI ++      R  R   
Sbjct: 1  MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGK 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFAGSDS 71


>gi|302521503|ref|ZP_07273845.1| SMC domain-containing protein [Streptomyces sp. SPB78]
 gi|302430398|gb|EFL02214.1| SMC domain-containing protein [Streptomyces sp. SPB78]
          Length = 375

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 12/93 (12%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG------- 53
          M++R  ++ + +S +++     L      T+ VG NG GK+N++EA+  L          
Sbjct: 1  MSHR--VRRIAVSGYKSIHEAELALTP-VTLLVGPNGAGKSNLIEAVELLGRLVDGELGM 57

Query: 54 -RGFRRASYADVTRIGSPSFFSTFARVEGMEGL 85
            G R    A +   G+        RVE  +  
Sbjct: 58 EVGLRGGPAA-LLHDGAKGARGIGLRVEAEDDH 89


>gi|305681507|ref|ZP_07404314.1| RecF/RecN/SMC N-terminal domain protein [Corynebacterium
          matruchotii ATCC 14266]
 gi|305659712|gb|EFM49212.1| RecF/RecN/SMC N-terminal domain protein [Corynebacterium
          matruchotii ATCC 14266]
          Length = 679

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 5  IKIKFLNISEFRNYAS---LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + +  L +  FR ++    L + F        G N  GKT I++ I +L   R
Sbjct: 1  MYLSKLTLKNFRQFSEEDPLEVDFQPGVVALAGPNDSGKTAIIDGIRYLLRTR 53


>gi|239817025|ref|YP_002945935.1| hypothetical protein Vapar_4055 [Variovorax paradoxus S110]
 gi|239803602|gb|ACS20669.1| hypothetical protein Vapar_4055 [Variovorax paradoxus S110]
          Length = 494

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 66/429 (15%), Positives = 127/429 (29%), Gaps = 101/429 (23%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--------- 55
           +++    I+ FR+      +  +Q T  +G N  GK+N+L A+  L+P  G         
Sbjct: 1   MRLASFQITNFRSINDSGSIDTSQITAILGRNDSGKSNLLRALHSLNPAEGLAELSPIKD 60

Query: 56  ---FRR-------------------ASYADVTRIGSPSFFSTF---------ARVEGMEG 84
               RR                   +  A++ ++   +              AR  G+EG
Sbjct: 61  FPRHRRLEECQGDTPVVATRWALEDSERAELVQMLPRAAKVRHVTAGRGYGTARWSGLEG 120

Query: 85  LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL 144
           L D+S+ +     +  + +         + +  + +           +       R    
Sbjct: 121 LGDLSLDVSDIKAKVRKIVPAVKAAAEKLADDARAMLEQAADAFDAAMILSPDYIR---- 176

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ----------MAELG 194
                A+       +    + M   +  L++        + +E            +A   
Sbjct: 177 -WSAGAV-----AVLQSLRKAMAAADAELSDKQ--EQMLAELEEMARAIANDTPALARAK 228

Query: 195 VKINIA--RVEMINAL-----SSLIMEYVQKENFPH--------IKLSLTGFLDGKFDQS 239
             +     R   ++          I E++ ++ +           KL     LD +  Q 
Sbjct: 229 QWVLDKLPRFVYVDEYPALPGRQNIAEHLARKGWGQDAPGQRNFEKLCKAAGLDPQQLQE 288

Query: 240 FCALKEEYAKKLFDGR--------------KMDSMSRRTLIGPHRSDLIVDYC---DKAI 282
                ++  +     R                +   R  L GP+   L+ D     D  +
Sbjct: 289 LLEKNDQATRNQLANRAGSVVTAEIRRLWKDRELKVRFNLDGPYMDTLVSDPNRAYDVEV 348

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALF-RIVTD 340
            +   S G Q          +    ++T G    ILLLDE   HL    +  L      D
Sbjct: 349 NLDERSRGFQWFFSF-----YVTFFADTKGAGDAILLLDEPGLHLHARSQADLLAHFEQD 403

Query: 341 IGSQIFMTG 349
             +QI  T 
Sbjct: 404 FANQIVYTT 412


>gi|313891627|ref|ZP_07825234.1| chromosome segregation protein SMC [Dialister microaerophilus UPII
           345-E]
 gi|313119905|gb|EFR43090.1| chromosome segregation protein SMC [Dialister microaerophilus UPII
           345-E]
          Length = 1185

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 58/158 (36%), Gaps = 21/158 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +K+  L +  F+++A    + F    T+ VG NG GK+NI +A+   L     R  R   
Sbjct: 1   MKLLRLTMQGFKSFADKTTIEFSDGMTVIVGPNGCGKSNISDAVRWVLGEQNVRNLRGQK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS              ++  +G   +    + +  R  RS      IN    R
Sbjct: 61  SEDIIFSGSETRNTKQVAEVTMVLDNEDGKLPLQTAEVTISRRVFRSGESEFYINKRSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141
           + D         L K          +D++ +    ERR
Sbjct: 121 LKDIHELLANSGLGKGTLAIIGQNRVDQVLTAQPEERR 158


>gi|310658343|ref|YP_003936064.1| atpas [Clostridium sticklandii DSM 519]
 gi|308825121|emb|CBH21159.1| ATPas [Clostridium sticklandii]
          Length = 341

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 43/101 (42%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + ++ F  +  L + F     IF+G+N  GKT+I++ I         + +    +
Sbjct: 1   MSIKKIELTNFTVFEDLNIEFCDGINIFIGENATGKTHIMKLIYSACKATNPKDSFSQKI 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
                P  +     +   EG++   +K+    ++  + + I
Sbjct: 61  VNTFKPEDYKISRLISRKEGISKSKVKITAIKNKIEQNIGI 101


>gi|259503530|ref|ZP_05746432.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259168608|gb|EEW53103.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 1188

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 78/212 (36%), Gaps = 23/212 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  L I  F+++A+   + F+   T  VG NG GK+NI+EAI ++   +     R   
Sbjct: 1   MRLLSLTIDGFKSFANKTTIKFEEGMTGIVGPNGSGKSNIIEAIRWVMGEQSARHLRGDK 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDD-----RSVRCL 103
             DV   GS              F ++   +        I+ KL    D        +  
Sbjct: 61  MVDVIFNGSAGRVPLNRALVSITFDNSDHYLASDFNELTITRKLFRNGDSEYLLNGNKVR 120

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
             + V + +   L +          ++ IF+G   +RR  ++ +      ++R+     E
Sbjct: 121 LKDIVDLFIDSGLGRESFSIISQGRIEAIFNGKPEDRRAIIETVAG--VAKYRKNKQTAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
           R +      L       S  +S    +A+   
Sbjct: 179 RRLEQTMDNLNRVNDIISELASQLEPLADQSA 210


>gi|255726652|ref|XP_002548252.1| structural maintenance of chromosome 3 [Candida tropicalis
           MYA-3404]
 gi|240134176|gb|EER33731.1| structural maintenance of chromosome 3 [Candida tropicalis
           MYA-3404]
          Length = 1193

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 89/272 (32%), Gaps = 23/272 (8%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F+ Y ++  +        + VG NG GK+N   AI   LS          
Sbjct: 1   MHIKKIIIQGFKTYKNVTTIDLLSPHCNVVVGRNGSGKSNFFAAIRFVLSDAYTHMSREE 60

Query: 62  AD-VTRIGSPSFFSTFARV-----EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
              +   GS +  S +  +     +G   +    I +            ++       D 
Sbjct: 61  RQGLIHEGSGTVMSAYVEIIFDNSDGRFPINKNEISIRRTIGLKKDDYSLDGKSATRSDI 120

Query: 116 LNKHLRISWLVPSMDRIFSGL-------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +N      +   +   I           S +  R       +       ++ +  + M  
Sbjct: 121 MNLLESAGFSRSNPYYIVPQGRITSLTNSKDHERLNLLKEVSGANVFENKLKESMKEMNQ 180

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
            N  L     D +  S  E ++ +L  +I    ++    L     + ++   F      L
Sbjct: 181 SN--LKRARIDETLISI-EERLKDL--QIESTDLKNFQKLDKQ-KKILEFNIFDREYNEL 234

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
              L+ + ++   A+K+E  + L D  K + +
Sbjct: 235 NVSLE-ELEERQQAMKDETKQDLIDLEKREKL 265



 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 7/81 (8%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
             D+   I   S G++ +  + +  A           AP  L DEI ++LD   R ++  +
Sbjct: 1082 NDEQQRIEQLSGGQKSLCAIALIFA-----IQNCDPAPFYLFDEIDSNLDTQYRTSVANL 1136

Query: 338  VTDIGS--QIFMTGTDKSVFD 356
            +  + S  Q   T     +  
Sbjct: 1137 IKSLSSEAQFICTTFRPELLQ 1157


>gi|218441463|ref|YP_002379792.1| exonuclease SbcC [Cyanothece sp. PCC 7424]
 gi|218174191|gb|ACK72924.1| exonuclease SbcC [Cyanothece sp. PCC 7424]
          Length = 1007

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 77/240 (32%), Gaps = 35/240 (14%)

Query: 9   FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            L +  F +Y    L F   HT    G NG GK+++LEAI++   G   R AS  DV   
Sbjct: 5   HLTLKNFLSYQEASLDFRGLHTACVCGANGAGKSSLLEAITWAIWGES-RAASEDDVIHT 63

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-------INDVVIR-VVDELNKH 119
           G+ +    F  +   +    I  +   +       +        IN   +R   + +   
Sbjct: 64  GAENVRVDFEFICNSQCYRIIRTRQRGKGGSLDFQIASSSGFKTINGKGLRGTQEAIISS 123

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           L++          F   +  R+   D  +                  + R     +   D
Sbjct: 124 LKL------DYDTFINSAYLRQGRADEFM------------------QRRPNERKQILAD 159

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                  E Q+A+    ++      +  L        +K     + ++    ++ + +Q 
Sbjct: 160 LLKLDQYE-QLADRAKDLSKLYKGQLQQLEESKKRLTEKLEEKEVIVTQKFTIEQEIEQG 218


>gi|319787256|ref|YP_004146731.1| DNA repair protein RecN [Pseudoxanthomonas suwonensis 11-1]
 gi|317465768|gb|ADV27500.1| DNA repair protein RecN [Pseudoxanthomonas suwonensis 11-1]
          Length = 580

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 77/246 (31%), Gaps = 38/246 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L + +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LTHLALKDFAVVRATELEFGPGMTVISGETGAGKSLLVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSPSFFSTFA--------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVI-- 110
            GS                        E  E      ++   R D   R   IN   +  
Sbjct: 57  HGSERAELAAGFDLSGNALARQWLREQELDEDDEQCQLRRVIRADGGSRA-WINGRPVTL 115

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRG 168
             + EL   L           + +  S      LD      A     R    D++ L+  
Sbjct: 116 AQLGELAGLLVEIHGQHEHQSLLARASQL--ALLDAHARNDAERAAVREAAADWQSLLDE 173

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL-----------GVKINIARVEMINALSSLIMEYVQ 217
           R  L + G         +E Q+AEL            + +   R      L +   E + 
Sbjct: 174 REALQSRGDV-GDRIGWLEHQLAELEREDLDPAALEALDLAHRRQANAAGLIAACEEALA 232

Query: 218 KENFPH 223
           + +   
Sbjct: 233 RIDGDE 238


>gi|293364020|ref|ZP_06610756.1| chromosome segregation protein SMC [Mycoplasma alligatoris A21JP2]
 gi|292552510|gb|EFF41284.1| chromosome segregation protein SMC [Mycoplasma alligatoris A21JP2]
          Length = 981

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 14/124 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           +K+  +    F+++A  + L FD   T  VG NG GK+NI +AI   L        R  +
Sbjct: 1   MKLIKIEAHGFKSFADPVTLHFDGGVTGIVGPNGSGKSNINDAIKWVLGEQSSKELRGDN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLAD-----ISIKLETRDDRSVRCLQINDVVI 110
            ADV   GS               +  EG +      I+I       +      IN  + 
Sbjct: 61  MADVIFAGSKTTKSLDRAEVTLTFDNREGSSSHPSEIITISRVLERGKGANQYYINGELC 120

Query: 111 RVVD 114
           R  D
Sbjct: 121 RHKD 124


>gi|212702163|ref|ZP_03310291.1| hypothetical protein DESPIG_00173 [Desulfovibrio piger ATCC
          29098]
 gi|212674368|gb|EEB34851.1| hypothetical protein DESPIG_00173 [Desulfovibrio piger ATCC
          29098]
          Length = 558

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-----QHTIFVGDNGVGKTNILEAISFLSPG 53
          ++I +L +  F++Y +    F          +  G NG GKT+ LEA+     G
Sbjct: 1  MRISYLKLVNFKSYKNQIFEFPPSREDKNLILVGGLNGFGKTSFLEALYLGLYG 54


>gi|218295508|ref|ZP_03496321.1| SMC domain protein [Thermus aquaticus Y51MC23]
 gi|218244140|gb|EED10666.1| SMC domain protein [Thermus aquaticus Y51MC23]
          Length = 1007

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 85/269 (31%), Gaps = 21/269 (7%)

Query: 6   KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           +I  L +  F+++A    L F    T  +G NG GK+N++EAI F++  R    R     
Sbjct: 5   RIDRLTLQGFKSFAERTVLDFPDPITGIIGPNGSGKSNLVEAIRFVTGARAQELRGQELK 64

Query: 63  D-VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
             + + G     + FA V          + +E R +      ++N   +  +  L  HL 
Sbjct: 65  AFLFQGGEGKPPAGFAEVRLELSRGRERLLVERRIEGEKSLFRVNGRPM-SLKALALHLS 123

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
            + L      I     +         V      H       + +         +      
Sbjct: 124 GTGLGRGGYAIVGQGEVGALLEAPEEVLL---SHLEEAAGLKPVAEAARATEIKLKEALE 180

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS-- 239
              + E ++AEL      AR E +   +       +                 +  +   
Sbjct: 181 LLQAREKELAEL-----KARAEALGKEAERAKRAQELAALALALKRSLLLARKEEAEGEV 235

Query: 240 ------FCALKEEYAKKLFDGRKMDSMSR 262
                   ALKEE A+ L     ++   +
Sbjct: 236 EALRARLLALKEEEAELLSRREALERERK 264


>gi|70729273|ref|YP_259010.1| chromosome segregation SMC protein [Pseudomonas fluorescens Pf-5]
 gi|68343572|gb|AAY91178.1| chromosome segregation SMC protein [Pseudomonas fluorescens Pf-5]
          Length = 1162

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 105/325 (32%), Gaps = 46/325 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 AKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY- 277
                ++        G+ +    + +  +   + + R  D+   R   G H      +  
Sbjct: 230 AQLSALRWQALNEQVGQRESVIGSQEVSFEALVAEQRNADAAIERFRDGHHELSERFNLV 289

Query: 278 ------CDKAITIAHGS--TGEQKV 294
                     I     S   G+Q++
Sbjct: 290 QGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|91976764|ref|YP_569423.1| ATP-dependent OLD family endonuclease [Rhodopseudomonas palustris
           BisB5]
 gi|91683220|gb|ABE39522.1| ATP-dependent endonuclease of the OLD family-like [Rhodopseudomonas
           palustris BisB5]
          Length = 669

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/360 (16%), Positives = 117/360 (32%), Gaps = 81/360 (22%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR-----A 59
           + +K + ++ FR++    +      T+FVG+N  GK+N ++A+  L+   G RR     +
Sbjct: 1   MYLKNMKLNSFRSFDQGEIELQKDLTVFVGENNGGKSNAIDAVRLLTTPLGGRREIYCES 60

Query: 60  SYADVTRIGSP----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
           +     R  S          FA +   +    IS   +    ++   L+ +         
Sbjct: 61  TD---VRFQSTTTYFELEGCFAELSTGQQGRFISAATDASLTQARFGLRFDGAR------ 111

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRNRLL 173
            +    + W          G S E             +   +   + D +R +   N   
Sbjct: 112 -SGIKPVLW------AGKEGNSAEP-------GCHEMVRHVYLPPLRDAKRSLASGNPTR 157

Query: 174 TEGYFDSSWCSSIEAQMA-ELG--------VKINIARVEMINALSSLIMEYVQKENFPHI 224
                +     +  AQ+A ELG        VK++ A  + ++AL+S +        F   
Sbjct: 158 IMALLNHFLEGTTPAQLAKELGRTHSHDVLVKVDGAVEKGLSALTSGVRRQTASLGF--- 214

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
                       D++   +  +   KL D        R +  G   ++L+          
Sbjct: 215 ----------STDEALVDIARDLRFKLADHGVDPEDLRYS--GHGYANLLFM-------- 254

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
                      ++        L    +    + L++E  AHL    + A+   + D   Q
Sbjct: 255 ----------AIIA-----VELEKVRSADLTLFLVEEPEAHLHPQLQAAVLAFLRDQAEQ 299


>gi|262282717|ref|ZP_06060485.1| DNA repair protein RecN [Streptococcus sp. 2_1_36FAA]
 gi|262262008|gb|EEY80706.1| DNA repair protein RecN [Streptococcus sp. 2_1_36FAA]
          Length = 552

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 76/226 (33%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L FD   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLHFDQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGS-------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+              S        +G+E   ++ I+ E          ++N  ++ + 
Sbjct: 57  HGATKAEIEGLFSLENSSAIEAIFEEQGLELTDELIIRREI-LQNGRSVSRVNGQLVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+               F D    A+   ++     + +L +  
Sbjct: 116 VLKAIGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDEDFVALKAFYQETFDHYRQLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LTLHKNQEEHKARIEMLEFQMAEIDSASLKTGEDKALHQERDRLLN 221


>gi|238762723|ref|ZP_04623692.1| hypothetical protein ykris0001_8990 [Yersinia kristensenii ATCC
           33638]
 gi|238699028|gb|EEP91776.1| hypothetical protein ykris0001_8990 [Yersinia kristensenii ATCC
           33638]
          Length = 808

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
           ++ +I ++F+ + +FR    ++L  D + TI VG N  GKT+IL A+  FL+ G  F
Sbjct: 49  LSGQISLRFVELCQFRRLGKVQLEIDPKTTILVGANNSGKTSILAALRHFLADGSSF 105


>gi|156088035|ref|XP_001611424.1| RecF/RecN/SMC N terminal domain containing protein [Babesia bovis]
 gi|154798678|gb|EDO07856.1| RecF/RecN/SMC N terminal domain containing protein [Babesia bovis]
          Length = 1205

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 63/170 (37%), Gaps = 23/170 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + IK +N+  FR Y       F   + + VG NG GK+N+L A+SF         A   +
Sbjct: 1   MYIKEVNLCGFRTYRDQCSFQFSKGYNVIVGQNGSGKSNVLLAVSF---------ALAEN 51

Query: 64  VTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           + +     +        E  E  A++ +  +   D   R +  +D  +R        L+ 
Sbjct: 52  LEQTNREYYLYRGIESSEDEEYTANVEVIFDISSDSRARSVVDDDGELR--------LKR 103

Query: 123 SWLVPSMDRIFSG---LSMERRRFLDRM-VFAIDPRHRRRMIDFERLMRG 168
            +       + +G      + R+ L+ + +     +      D   +++ 
Sbjct: 104 IFSRSKDLYLVNGRQMSRKDYRQLLESVNLIPFSKQSASYRNDLHFIVKQ 153



 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 44/221 (19%), Positives = 78/221 (35%), Gaps = 25/221 (11%)

Query: 140  RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199
            R    D      +  +     +F   ++ R   +T  +  ++   SI+A  ++    +  
Sbjct: 957  RCAKFDLSSHGAEDEYAALRAEFT-GLKDRQERMTRSH--AAILKSIQALKSQKDANLVQ 1013

Query: 200  ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
               ++   LS+   E V       + +     +          L E +          DS
Sbjct: 1014 MLSQLNQKLSATFAELVTGGRLQAVLIRRDASVGDISSSVAVCLPECFV---------DS 1064

Query: 260  MSRRTLIGPHRSDLIVDY--CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317
                T  G    DL V +    + + +   S G++ +V +   LA  RL       AP  
Sbjct: 1065 PDEETFTGL---DLQVSFSPDAERMQLYQLSGGQKTLVSLAFILAAQRL-----HTAPFY 1116

Query: 318  LLDEISAHLDEDKR---NALFRIVTDIGSQIFMTGTDKSVF 355
            LLDEI A LD++ R   + L     + GSQ  +T     + 
Sbjct: 1117 LLDEIDAALDDNYRLNVSQLLSRQCNEGSQCILTTFRPELL 1157


>gi|58581651|ref|YP_200667.1| recombination protein N [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426245|gb|AAW75282.1| recombination protein N [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 600

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 96/268 (35%), Gaps = 39/268 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 48  LRHLSIKDFAVVRATELEFGPGMTVVSGETGTGKSLMVDALGFLSGLR-----ADSGVVR 102

Query: 67  IGSPSF-----FSTFARVEGMEGLADISIKLE--------TRDDRSVRCLQINDVVI--R 111
            G+        F   A   G+  LAD  +  E         R D   R   IN   +   
Sbjct: 103 HGADRAELSAEFQLPAEHPGLRWLADNELDDEAQCQLRRIIRADGGSRA-WINGRPVTSS 161

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168
            + EL   L           + +  S      LD   R    +D   R+    ++ L+  
Sbjct: 162 QLAELASRLVEIHGQHEHQALMARHSQL--ALLDAYARNSAQLDQV-RQASQRWQALLDE 218

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL-----------GVKINIARVEMINALSSLIMEYVQ 217
           R+ L  +G   S     +E Q+AEL            + +N  R     AL        Q
Sbjct: 219 RDTLSAQGDV-SDRIGFLEHQLAELEREDLDPAAIAALDVNHRRQAHATALIGTCDSVAQ 277

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKE 245
           + N      +L    D + D +  A  E
Sbjct: 278 QLNGDEGASALGLLQDSRHDIAHVAEHE 305


>gi|328542225|ref|YP_004302334.1| SMC domain protein [polymorphum gilvum SL003B-26A1]
 gi|326411975|gb|ADZ69038.1| SMC domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 573

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/388 (13%), Positives = 108/388 (27%), Gaps = 62/388 (15%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA--SYAD 63
           +I+ + I+ FR   S      A     +G    GK+ IL+A+      R  R    + AD
Sbjct: 3   RIRKVEINNFRCIRSFVWYPSAGINCLIGPGDSGKSTILDALDLCLGAR--RTLQFTDAD 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              +      +    +  ++        L+  +   +    +N     + DE  K L   
Sbjct: 61  FYNLNVDEPITITLTIGALDEA------LKNIESYGLFLRGLNAATGEMEDEPEKGLETV 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
                  ++  G               ++P         +     RN    +     +  
Sbjct: 115 LF----LQLTVGSD-------------LEPVWTLVSERAKAQNATRNLTWKDRV---ALA 154

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            +    +AE    +   R  ++N L+    +                  D +       L
Sbjct: 155 PTRIGALAE--SNLGWRRGSVLNRLTDEKADASAALAKAARDARSAFGTDAE-----KQL 207

Query: 244 KEEYAKKLFDGRKMDSMSRRT--------LIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
            E         R++                +      + +   D       G        
Sbjct: 208 GETLKLVGEAARELGIDIGANARALLDAHSVTFSGGTISLHDADGVPLRGLG-------- 259

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS----QIFMTGTD 351
           +  + L  A L       + +LL+DE+   L+  +       +    +    Q+F T   
Sbjct: 260 IGSMRLLIAGLQRKAAETSSMLLVDELEHGLEPHRIIRFLGSLGAKETLPPLQVFATTHS 319

Query: 352 KSVFDSLNETAKFMRI----SNHQALCI 375
                 L+  A+   +    + H A C+
Sbjct: 320 PVALRELSG-AQLFVVRETATGHSATCV 346


>gi|312136017|ref|YP_004003355.1| SMC domain-containing protein [Caldicellulosiruptor owensensis
          OL]
 gi|311776068|gb|ADQ05555.1| SMC domain protein [Caldicellulosiruptor owensensis OL]
          Length = 658

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + +  + I  FR+   + + F     I VG N  GK+NI++AI  
Sbjct: 1  MYLHRVIIKNFRSIEYIDITFAKGKNIIVGKNNCGKSNIIKAIDL 45


>gi|145589876|ref|YP_001156473.1| hypothetical protein Pnuc_1696 [Polynucleobacter necessarius
          subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048282|gb|ABP34909.1| hypothetical protein Pnuc_1696 [Polynucleobacter necessarius
          subsp. asymbioticus QLW-P1DMWA-1]
          Length = 641

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLS 51
          +K+  ++I  +R+  +L L      T +FVG N  GK+NIL+AI+ L+
Sbjct: 1  MKLTNIDIKNYRSIDTLSLSVRDGVTSVFVGMNESGKSNILKAINLLA 48


>gi|47157021|gb|AAT12384.1| CUT3-like chromosome segregation protein-like protein [Antonospora
           locustae]
          Length = 186

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 4/114 (3%)

Query: 3   NRIKIKFLNISEFRNYA-SLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
           + +K+  + I+ F+++     +   D   T+ VG NG GK+NI++A+ F+   R    R 
Sbjct: 2   HSLKLTTIRINNFKSFEGEHEISGLDHSLTVIVGPNGSGKSNIIDAVLFVLGFRAKKMRH 61

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           A   D+    +         +    G+   +++ E    +  R    N  V   
Sbjct: 62  AVQTDIIYKDAERRSMCSVELVFDNGVTMFTVRRELYISKKSRYFLTNQEVKNT 115


>gi|258611435|ref|ZP_05711507.1| LOW QUALITY PROTEIN: DNA repair protein RecN [Listeria
           monocytogenes FSL N3-165]
 gi|258600007|gb|EEW13332.1| LOW QUALITY PROTEIN: DNA repair protein RecN [Listeria
           monocytogenes FSL N3-165]
          Length = 479

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG      AD  R
Sbjct: 2   LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G               +     A +E     +D  + LE    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    +     +++    +++ + + 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEYQTIEKE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197


>gi|159029839|emb|CAO90893.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1009

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/268 (18%), Positives = 99/268 (36%), Gaps = 30/268 (11%)

Query: 9   FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            L +  F +Y    L F   HT    G NG GK+++LEAI++   G   R +   DV   
Sbjct: 5   QLTLKNFLSYREAVLDFRGLHTACICGANGAGKSSLLEAITWAIWGES-RVSIGDDVIHA 63

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD---------ELNK 118
           GS      F    G E    I  +        +    IND   R +          ++N 
Sbjct: 64  GSDYARVDFEFSYGGEIYKIIRSRHRGGKASGLDFQVINDQSFRPLSGKSIKDTQAQINT 123

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFA---IDPRHRRRMIDFER--LMRGRNRLL 173
           +L+I        + F   +  R+   D  +        +    ++  +R  ++  + + +
Sbjct: 124 YLKI------DHKTFINSAYLRQGQADEFMKQPPSGRKQILAELLQLDRYEILANKAKDI 177

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
           ++ +   S     + +  +L ++   +  E +  LS+ I +  Q++   + +L       
Sbjct: 178 SKQFDGQSLQIEQQVETIKLRLQEKNSYQEHLQELSTQINQINQEQEVNNWRLQQL---- 233

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMS 261
               Q     ++ + K+L   R+ +   
Sbjct: 234 ----QGEENQRQNWEKQLQWQREREQER 257


>gi|71734086|ref|YP_274638.1| DNA replication and repair protein recF [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|71554639|gb|AAZ33850.1| DNA replication and repair protein recF [Pseudomonas syringae pv.
          phaseolicola 1448A]
          Length = 121

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  + +  F++Y S  L   A  T  +G N  GK+N+LEAI  L+     + +   D+TR
Sbjct: 2  LISIELKNFKSYESASLPLAA-MTFLIGANASGKSNVLEAIRLLNWLA--KGSRLEDITR 58


>gi|85000565|ref|XP_955001.1| chromosome segregation (SMC) protein [Theileria annulata strain
            Ankara]
 gi|65303147|emb|CAI75525.1| chromosome segregation (SMC) protein, putative [Theileria annulata]
          Length = 1912

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 76/194 (39%), Gaps = 10/194 (5%)

Query: 183  CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF-LDGKFDQSFC 241
             + +E    E   KI+I   E +      + E          ++  +   L    +++  
Sbjct: 1292 ITVLECDGMEYMNKIDIKEYETLKNEFQQLQEQKNHILNSKQQILYSIHKLKKTKEENLM 1351

Query: 242  ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT-IAHGSTGEQKVVLVGIF 300
             + E+   +L    +    +       +  D+ V + +   T I   S G++ ++L+   
Sbjct: 1352 EMIEKMNNELLKIFQYFVPNENMNEKFNGLDIKVSFNNTNETNINLLSGGQKSLILLTFI 1411

Query: 301  LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
            LA  +L       AP  LLDE+ + LDE  R  L + ++ + +QI +T   + +   L  
Sbjct: 1412 LALNKL-----RPAPFYLLDEVDSALDEHYRLKLAKFLSTMNTQIILTTFKEEL---LMP 1463

Query: 361  TAKFMRISNHQALC 374
            +  F  I N   + 
Sbjct: 1464 SEVFYEIKNENGIS 1477


>gi|49618927|gb|AAT68048.1| chromosome adhesion protein SMC1-like [Danio rerio]
          Length = 1233

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 21/177 (11%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKTLKD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F +   + +G + L+   I +    E R +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVTMVYQQDGGQELSFSRIIIGSSSEYRINNKVVGLSDYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +  L K         +++ I      ER    + +      R      +++R  + 
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFEEI-----SRSGELAQEYDRCKKE 174


>gi|254168959|ref|ZP_04875798.1| hypothetical protein ABOONEI_887 [Aciduliprofundum boonei T469]
 gi|197622065|gb|EDY34641.1| hypothetical protein ABOONEI_887 [Aciduliprofundum boonei T469]
          Length = 802

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 13/104 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ +++   R+Y    +      T+F GD G GKT IL +I F   G           
Sbjct: 1   MIIRRIHLRNIRSYEDQEIELGKGITLFEGDIGSGKTTILMSIDFALFGNS--------- 51

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
               +P F+ +  R    +G  +I  +   ++ +  R L++   
Sbjct: 52  ----TPDFYRSLLRKGANKGFVEIVFEHGGKEYKIRRVLEVRGK 91



 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 5/165 (3%)

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSLTGFLDGKFDQSFCALKE 245
           E ++A L  +I+  R  +I  L   I  Y +   F   ++  L   L+        ++ E
Sbjct: 610 EKRVAGLRNEIDKKR-RLIERLREEIKLYKKHVEFGKWLRDELAQALEEIERLRLLSINE 668

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRS-DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E+ +   +                     IV Y    + I   S GE+  + +   LA  
Sbjct: 669 EFRQLFEEWFHEIMGESEYEATIDEDFKPIVRYQKFDMPIYSLSGGERTSIALAYRLALN 728

Query: 305 RLISNTTG-FAPILLLDEISAHLDEDKRNALFRIVTDIGS-QIFM 347
            ++  +    + +L+LDE +    +D+   L  +   + + QI +
Sbjct: 729 TMVKRSLNLESHLLILDEPTDGFSKDQLYKLKDVFDKMDTDQIII 773


>gi|78776889|ref|YP_393204.1| hypothetical protein Suden_0690 [Sulfurimonas denitrificans DSM
           1251]
 gi|78777784|ref|YP_394099.1| hypothetical protein Suden_1587 [Sulfurimonas denitrificans DSM
           1251]
 gi|78497429|gb|ABB43969.1| hypothetical protein Suden_0690 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498324|gb|ABB44864.1| hypothetical protein Suden_1587 [Sulfurimonas denitrificans DSM
           1251]
          Length = 550

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 130/361 (36%), Gaps = 29/361 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++   +  F+ +  L + F+A+  +  G+NG GK++I EA+         ++    D+
Sbjct: 1   MRVQKAELKYFKFHKDLTVDFNAKSLLIYGENGTGKSSIYEALYSNFY---HQKRLDKDI 57

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV--VDELNKHLRI 122
                 ++ S     E +    +I +  +   + +   L    V+ R      +      
Sbjct: 58  ASKVQETYRSRGCEAETL--KVNIILDEDKVLNCNADELSDFSVLTRKTQPQNIIGIDPS 115

Query: 123 SWLVPSMDRIFSGLSMERRRF---LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
            +             + +  F   L+  +F   P+ +  + D       + R    G  D
Sbjct: 116 IYFANEKVL----NRLTKENFYIALNDTLFEHFPQMKSPVTDKNENYHFK-RFAQFGNLD 170

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
           +     I+    +    I     EM+  L + +++ V +  FP  ++     +  KFD+S
Sbjct: 171 TLKNKIIDEIGNDDATAIRAKFEEMLK-LENDLLQLVFENYFPLKEI---NEVIEKFDES 226

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-KAITIAHGSTGEQKVVLVG 298
           F   K  ++         D +       P    + +D  +       H +  + K++ V 
Sbjct: 227 F---KISFSITPAHSGNSDILE----FNPPVIKIKIDDIECNGKPSQHFNEAKLKLISVA 279

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFD 356
           I+ A A+          +L+LD+    LD   R  + + + +     Q  +   +   F+
Sbjct: 280 IYFALAKKYEEKRDGFKLLVLDDFLTSLDMANRKLIMKYILEEFQDYQKLILTHNLQFFN 339

Query: 357 S 357
            
Sbjct: 340 M 340


>gi|321251833|ref|XP_003192194.1| cohesin complex subunit and chromosome segregation protein
          [Cryptococcus gattii WM276]
 gi|317458662|gb|ADV20407.1| Cohesin complex subunit and chromosome segregation protein,
          putative [Cryptococcus gattii WM276]
          Length = 1214

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRAS 60
          + ++ L + +F++Y   ++++  DA     +G NG GK+N+++AISF+   +    R   
Sbjct: 1  MPLQRLELYDFKSYRGKQVIYFGDAPFVSVIGPNGAGKSNLMDAISFVLGVKSAQLRSTQ 60

Query: 61 YADVTRIGSPSFFSTFA 77
            D+   G  +      
Sbjct: 61 LKDLIYRGRRAATREVG 77


>gi|317472751|ref|ZP_07932064.1| chromosome segregation protein SMC [Anaerostipes sp. 3_2_56FAA]
 gi|316899777|gb|EFV21778.1| chromosome segregation protein SMC [Anaerostipes sp. 3_2_56FAA]
          Length = 1186

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 79/219 (36%), Gaps = 26/219 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + ++ F+++A+ +   FD+  T  VG NG GK+N+ +A+ ++      +  R A 
Sbjct: 1   MYLKSIEVNGFKSFANKMIFKFDSGITGIVGPNGSGKSNVADAVRWVLGEQSAKQLRGAK 60

Query: 61  YADVTRIGSPS---FFSTFARVEGMEGLADISIKLE------TRDDRSVRCLQINDVVIR 111
             DV   G+       S +  +        + I  E                 +N    R
Sbjct: 61  MEDVIFSGTEMRKPMGSAYVAITMDNSDHSLPIGFEEITVARRVYRSGESEYLMNGSPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
             D         + K          +D+I SG   +RR   D     +   +++  ++ E
Sbjct: 121 RKDIVELFFDTGIGKEGYSIIGQGQIDQILSGKPEDRRELFDEAAGIVK--YKKNKLETE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
           + +      L      +     +E Q+  L  +   AR 
Sbjct: 179 KSLEAERENLNRV---TDILMELERQVGPLKTQSEKARE 214



 Score = 36.0 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 73/211 (34%), Gaps = 27/211 (12%)

Query: 157  RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL--IME 214
                ++E            G       + ++ ++AE+  +I       +NA+     ++E
Sbjct: 944  YMWENYELTYHQAKSAA--GEEPRESLTELKKKIAEIKTQIRELGPVNVNAIEDYRDVLE 1001

Query: 215  YVQKENFPHIKL-SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
              +     H  +      L G  D+   A++ ++ +K  D ++M     + L G   + L
Sbjct: 1002 RYEFLKKQHEDIVKAEAHLAGLIDELEAAMRNQFREKFKDIQEMFQKVFQELFGGGYARL 1061

Query: 274  IVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
             +   D               K   +   S GE+ +  + +  A           +P  L
Sbjct: 1062 ELTDDDVLESGIRIIAQPPGKKLQNMMQLSGGEKALTAISLLFA-----IQNLKPSPFCL 1116

Query: 319  LDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
            LDEI A LD+       + +  +   +Q  +
Sbjct: 1117 LDEIEAALDDSNVARFAQYLHKLTKETQFIV 1147


>gi|16081854|ref|NP_394249.1| chromosome segregation protein related ptotein [Thermoplasma
           acidophilum DSM 1728]
 gi|10640066|emb|CAC11918.1| chromosome segregation protein related ptotein [Thermoplasma
           acidophilum]
          Length = 1140

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 100/292 (34%), Gaps = 37/292 (12%)

Query: 7   IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-F--RRASYA 62
           I+ +    F+++   + + F     +  G NG GK+NI + + F+   +     R    +
Sbjct: 5   IERIEAHNFKSFRRKKVINFTKGLNVISGPNGSGKSNIGDMLLFVLGTKSIHAVRADRLS 64

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D+   GS +  S        +G + +  +    +D       +N V  R + E+++ L  
Sbjct: 65  DLVSKGSGNECSVSVTFRSDDGRSLVIERRLVIEDEPKSYYYVNGVRSR-LSEIDETLAS 123

Query: 123 SWLVP---------SMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRG--- 168
             +            ++   S    ERR+ ++R   V   D    R   D E + R    
Sbjct: 124 MGINFGTYSFVLQGDINDFISYSGQERRKLIERISGVDQFDSEIERVKADIEAVSRNMEI 183

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR-VEMINALSSLIMEYVQKENFPHIKLS 227
              ++ E   +     + + +       +   R VE    L+       +K      K +
Sbjct: 184 NQTIIDEKRQNLERLRTEKEKKERYDALLKRKRDVEYTEILN-------RKNAMERQKRT 236

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           + G +     +    L+E         R+ D   R   I   R D+     D
Sbjct: 237 IEGQIS-DLTKEIAQLEE---------RRSDLEKRSEAIRIRREDVAKRIDD 278


>gi|282166154|gb|ADA80172.1| hypothetical protein SAP105B_008 [Staphylococcus epidermidis]
          Length = 858

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
           DQ    + +E      D    D  SR T  G     L VD  +K       S GEQK + 
Sbjct: 579 DQFKSQIAKELNYLRCDNIAFDIKSRGT-KGQTTIKLTVDSENKVEVSDIFSEGEQKALS 637

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGTDKSV 354
           +  FLA    + NT G    ++LD+  +  D+ +R  + + +       QI +   D   
Sbjct: 638 LAFFLAEISSMDNTGG----IILDDPVSSFDQGRREYVAKRLIEEASNRQIIIFTHDIVF 693

Query: 355 FDSLNETAK 363
           F +L   AK
Sbjct: 694 FHTLENFAK 702


>gi|303287496|ref|XP_003063037.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455673|gb|EEH52976.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1089

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 4/105 (3%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL--EAISFLSPGRGF-RRASYADVT 65
            + +  F  Y  + +    +  + +G NG GK++ +   AI      R   R    A+  
Sbjct: 57  RVKLHNFMTYGDVEMEPGPRLNVILGPNGTGKSSFVCALAIGLAGSTRLLGRADKIAEFV 116

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           + G  S +S      G +    + +K E R   +    ++N V++
Sbjct: 117 KRGEESGYSEITLATGSDSGTMV-VKREIRRRDASSVWKVNGVIV 160


>gi|320324418|gb|EFW80497.1| hypothetical protein PsgB076_13239 [Pseudomonas syringae pv.
          glycinea str. B076]
          Length = 438

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  + +  F++Y S  L   A  T  +G N  GK+N+LEAI  L+     + +   D+TR
Sbjct: 2  LISIELKNFKSYESASLPLAA-MTFLIGANASGKSNVLEAIRLLNWLA--KGSRLEDITR 58


>gi|284053287|ref|ZP_06383497.1| hypothetical protein AplaP_17624 [Arthrospira platensis str.
          Paraca]
 gi|291571575|dbj|BAI93847.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 170

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  + + +F++Y S  L    + T+ +G N  GK+N++EA+  LS  
Sbjct: 2  ITEIELKDFKSYKSATLHLG-RLTVLIGANASGKSNVIEALRLLSRL 47


>gi|320328461|gb|EFW84463.1| hypothetical protein PsgRace4_18343 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 438

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  + +  F++Y S  L   A  T  +G N  GK+N+LEAI  L+     + +   D+TR
Sbjct: 2  LISIELKNFKSYESASLPLAA-MTFLIGANASGKSNVLEAIRLLNWLA--KGSRLEDITR 58


>gi|294010393|ref|YP_003543853.1| putative ATP-dependent endonuclease of the OLD family [Sphingobium
           japonicum UT26S]
 gi|292673723|dbj|BAI95241.1| putative ATP-dependent endonuclease of the OLD family [Sphingobium
           japonicum UT26S]
          Length = 596

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 66/361 (18%), Positives = 124/361 (34%), Gaps = 63/361 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           ++I  + IS F N++ + L       + VG+N VGK+N + A+   L PG   R      
Sbjct: 3   VRISRVKISNFANFSEINLETGENI-VIVGENKVGKSNFIRALQLILDPGLSER---DRQ 58

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +   G   F+      + +    +I+++L    D                  L  HL   
Sbjct: 59  L---GLEHFWDGLGE-DKLGETVEIAVELTDFTDDP---------------RLMAHLNDC 99

Query: 124 WLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            + P       G  M  R   RF  +     DP     + D+E ++         G  D 
Sbjct: 100 VVDP-------GPPMVARLTYRFQPKANLDRDP---ESLADYEYII--------FGGDDP 141

Query: 181 SW--------CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSL-T 229
                        ++ Q+A    +  +   R   +  L   +   +  +    I+  +  
Sbjct: 142 EMSIGPSLRRMLPLDVQVALRDAEKDLASWRNSPLRPLIEELATSLDADARAEIQEQVNE 201

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL-IGPHRSD-----LIVDYCDKAIT 283
              + +      A  E  +++L            TL + P R D     L +   + A  
Sbjct: 202 AQAELEGHAEVVATAERISERLIAIAGEQHAVPLTLGLSPTRVDALLRSLRLLIDNGARG 261

Query: 284 IAHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           IA  S G   ++ + +  L   RL+++        +++E  AHL    +  ++R     G
Sbjct: 262 IADASLGTANLIFMALKSLELDRLVTDGERDHTFFVVEEPEAHLHPHVQRLVYRYFLGTG 321

Query: 343 S 343
           +
Sbjct: 322 A 322


>gi|220905777|ref|YP_002481088.1| chromosome segregation protein SMC [Cyanothece sp. PCC 7425]
 gi|219862388|gb|ACL42727.1| chromosome segregation protein SMC [Cyanothece sp. PCC 7425]
          Length = 1198

 Score = 55.3 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 91/264 (34%), Gaps = 58/264 (21%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK L ++ F+++ S   +      T+  G NG GK+N+L+A+ F   L+  +G R   
Sbjct: 2   VYIKQLELTNFKSFGSTTAIPLLPGFTVISGPNGSGKSNLLDALLFALGLAGSKGMRAER 61

Query: 61  YADVTRIGS--------PSFFSTFARVEGMEGLAD----------------ISIKLETRD 96
             D+              +  +    +EG+E  A                   ++ E + 
Sbjct: 62  LPDLVNHSQTRRGQSIVETRVTVTFNLEGLELEASEAGNESDATAQPDVPPPELRQEWQI 121

Query: 97  DRSVRCLQ---------INDVVIRVVDELNKHLRISWLVPSMDRIFSGL---------SM 138
            R +R  +         +ND     ++EL+  L    + P    +             + 
Sbjct: 122 TRKLRVTKQGTYTSTYYVNDHPC-TLNELHAQLNQLRIYPEGYNVVLQGDVTGIISMNAR 180

Query: 139 ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198
           +RR  +D +           + DF+R +      LT           +E ++ +   ++ 
Sbjct: 181 QRREIIDELAG---------VGDFDRKINQAKEKLTTVKEREDRFRIVETELIDQRDRLA 231

Query: 199 IARVEM--INALSSLIMEYVQKEN 220
             R +      L + +    Q E 
Sbjct: 232 RDRQQAEKYQKLRAELQAKTQWEG 255


>gi|290992671|ref|XP_002678957.1| structural maintenance of chromosome 4 [Naegleria gruberi]
 gi|284092572|gb|EFC46213.1| structural maintenance of chromosome 4 [Naegleria gruberi]
          Length = 858

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 9/105 (8%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           I  + +  F++Y    L   F       +G NG GK+NI+++I F+        R  +  
Sbjct: 403 IHSIEMKNFKSYKDNTLVGPFTTGLNCIIGSNGSGKSNIIDSICFVLGFESKELRAKNLD 462

Query: 63  DVTRIGSPSFFSTFARVEGM-----EGLADISIKLETRDDRSVRC 102
            +      S   +F   +       + L  +   +E +  + ++ 
Sbjct: 463 YLINDQCSSDEESFKLADSEASILGDNLKRVQESIELKKKQRIKI 507


>gi|257876181|ref|ZP_05655834.1| chromosome partition protein SMC [Enterococcus casseliflavus EC20]
 gi|257810347|gb|EEV39167.1| chromosome partition protein SMC [Enterococcus casseliflavus EC20]
          Length = 1192

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 75/216 (34%), Gaps = 32/216 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+ + T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADRTVIDFEHRVTAVVGPNGSGKSNITEAIRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS      +       ++  +    +    I +  R  R+      +N    R
Sbjct: 61  MPDVIFAGSDTRRALNIAEVTIVLDNSDHYLPMDYSEISVTRRLRRTGESDFFLNKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IFS    +RR   +             +   +
Sbjct: 121 LKDIQELFMDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEA--------AGVLKYKQ 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSS---IEAQMAELGVK 196
           R  +   +L       S        +E Q+  L  +
Sbjct: 173 RKKKAEQKLFETEDNLSRLQDIIYELEDQLVPLAAQ 208


>gi|237715297|ref|ZP_04545778.1| ATP binding protein [Bacteroides sp. D1]
 gi|262405139|ref|ZP_06081689.1| ATP binding protein [Bacteroides sp. 2_1_22]
 gi|294645436|ref|ZP_06723140.1| RecF/RecN/SMC N-terminal domain protein [Bacteroides ovatus SD CC
          2a]
 gi|294807068|ref|ZP_06765887.1| RecF/RecN/SMC N-terminal domain protein [Bacteroides
          xylanisolvens SD CC 1b]
 gi|229444606|gb|EEO50397.1| ATP binding protein [Bacteroides sp. D1]
 gi|262356014|gb|EEZ05104.1| ATP binding protein [Bacteroides sp. 2_1_22]
 gi|292639239|gb|EFF57553.1| RecF/RecN/SMC N-terminal domain protein [Bacteroides ovatus SD CC
          2a]
 gi|294445767|gb|EFG14415.1| RecF/RecN/SMC N-terminal domain protein [Bacteroides
          xylanisolvens SD CC 1b]
          Length = 449

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++I  + I  FR +      FD++  + +G+N  GKT +L A+
Sbjct: 1  MRINTIKIKNFRGFEDKSFEFDSRMNVVLGNNTTGKTTLLHAV 43


>gi|326423698|ref|NP_759379.2| putative ATP-dependent endonuclease of the OLD family [Vibrio
           vulnificus CMCP6]
 gi|319999055|gb|AAO08906.2| predicted ATP-dependent endonuclease of the OLD family [Vibrio
           vulnificus CMCP6]
          Length = 568

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/389 (14%), Positives = 130/389 (33%), Gaps = 63/389 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA--ISFLSPGRGFRRASYA 62
           +K+K + +  FR+   + +  +  +++ VG+N  GKTN+L A  + +   G  F      
Sbjct: 1   MKLKKIEVHNFRSIKDIAIEVNP-YSLIVGENNSGKTNLLSALRVFYEESGLKFDTKRDF 59

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI----NDVVIRVVDELNK 118
                     +   + +   E    +  +     DR ++  +     + +V      +  
Sbjct: 60  PKFSTDDQESWIELSFLTTPEEQDSLKEEY-RSADRVLKVRKYLQSEHGLVQSKQSNIYA 118

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           +          + +F G +      L  ++      +   +   E  M+           
Sbjct: 119 YENGQL----SNNLFYGAANVSTSKLGSVI------YIPAVSKVEDSMKTTGPSPFRNMV 168

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGK-- 235
           +     +I         +         N  + +   E +   +   +K  +   L     
Sbjct: 169 NVVMKKAI------ASSESFKTLTTAFNEFNKVFKQEEISGFSIDGVKSEINSELKQWGV 222

Query: 236 -FDQSFCAL-KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            FD     +  ++  K L      DS          R D+           + G  G Q+
Sbjct: 223 GFDIEVSPINTDDLVKSLLKPHIEDSNLG------ERVDIS----------SFG-QGLQR 265

Query: 294 VVLVGI-FL-AHARLISNTTGFAP-----ILLLDEISAHLDEDKRNALF----RIVTDIG 342
            ++  +  L A     + +T         ++L +E  A L   +++ L+    ++V+D  
Sbjct: 266 HLIYTLIKLSAKYSAKTKSTKKDFNPDFSLILFEEPEAFLHPAQQDVLYRSLNKLVSDEQ 325

Query: 343 SQIFMTGTDKSVF-----DSLNETAKFMR 366
            Q+ ++ T  SVF     DS+N  ++  +
Sbjct: 326 QQVLVS-THSSVFVSKSIDSINSISRLFK 353


>gi|291567860|dbj|BAI90132.1| chromosome segregation protein SMC [Arthrospira platensis NIES-39]
          Length = 1202

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 113/354 (31%), Gaps = 80/354 (22%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + ++ F+++  +  +      T+  G NG GK+NIL+A+ F   LS  +G R   
Sbjct: 2   VHIKRVELTNFKSFGGTTSIPLLPGFTVVSGPNGSGKSNILDALLFALGLSSSKGMRAER 61

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISI---------------------------KLE 93
             D+         +   RV     L+D++                            K E
Sbjct: 62  LPDLVNNSQSRKTTVETRVTVTFDLSDLTFPELEEEPTQLGGEGETVTEGEETGLVAKEE 121

Query: 94  TRDDRSVRCLQ---------INDVVIRVVDELNKHLRISWLVPSMDRIFSGL-------- 136
               R +R  +         IN        EL++ L    + P    +            
Sbjct: 122 WSVTRKLRVTKQGTYTSTYYINGEPC-TQTELHEQLNRLRIYPEGYNVVLQGDVTGIITM 180

Query: 137 -SMERRRFLDR--MVFAIDPRHRRRMIDF--------------ERLMRGRNRLLTEGYFD 179
              ERR  +D    V   D +                      + L+  R+RL  +    
Sbjct: 181 KPRERREIIDELAGVAQFDRKIVLAREKLDTVKEREERSRIVEQELISQRDRLAKD-RAK 239

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
           +     ++A++ E  +   I   + +      + E ++  +  H +L+          + 
Sbjct: 240 AEKYQKLKAELQEKSLWYAIGHYQTLQQQLWRLREQIEAGDRSHSELTEQFQQQQSQIKQ 299

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                E     +    + + +  ++ +    ++L             GSTG+++
Sbjct: 300 ATTTLETLNALVKAMGEEELLQLQSTLATQEAEL-------------GSTGQRR 340


>gi|222528341|ref|YP_002572223.1| SMC domain-containing protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455188|gb|ACM59450.1| SMC domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 412

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 19/109 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L++  F+++  + +       + +G N  GK+N ++   FL            D+
Sbjct: 1   MKLKSLSVKNFKSFKEINVELKD-FNVVIGANASGKSNFVQVFKFL-----------RDI 48

Query: 65  TRIGSPSFFSTFARVE-------GMEGLADISIKLETRDDRSVRCLQIN 106
             +G  +  S    +E       G      ISI  E  DD  +   + N
Sbjct: 49  MNLGLENAVSIQGDIEYLTNLKVGRGEELSISIVCEMEDDEKIANTKQN 97


>gi|150864715|ref|XP_001383656.2| structural maintenance of chromosomes protein [Scheffersomyces
           stipitis CBS 6054]
 gi|149385971|gb|ABN65627.2| structural maintenance of chromosomes protein [Scheffersomyces
           stipitis CBS 6054]
          Length = 1093

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 7/122 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYADV 64
           +  L ++ F NY S          + +G NG GK+ ++ AI     G+    +R + + +
Sbjct: 40  LMKLKLTNFNNYGSGEFNLSPSLNMVIGPNGSGKSTVVSAICLGLGGKIDLIKRQTLSSM 99

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHLRI 122
            + G  S  ST   ++  +G   I +K E     +     IN        V EL     I
Sbjct: 100 IKKG-KSTASTEVTIKNFDGQPPILVKREFTAKENRW--YINHRPATEAKVKELRARFNI 156

Query: 123 SW 124
             
Sbjct: 157 QL 158


>gi|134299914|ref|YP_001113410.1| chromosome segregation protein SMC [Desulfotomaculum reducens MI-1]
 gi|134052614|gb|ABO50585.1| condensin subunit Smc [Desulfotomaculum reducens MI-1]
          Length = 1186

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 101/289 (34%), Gaps = 44/289 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K ++I  F+++   ++L   +  ++ VG NG GK+NI +AIS+          R   
Sbjct: 1   MVLKRMDIQGFKSFGDRVKLELHSGLSVVVGPNGSGKSNISDAISWCLGEQRASSLRGGR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   GS              ++    +  +  +  +   R  R       IN V  R
Sbjct: 61  MEDVIFAGSAKRKPVGLAEVTLTLDNTAKMFSLPYEEVSVTRRLYRSGESEYLINKVPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR------- 156
           + D         L +          +D I S    ERR  ++     +  RHR       
Sbjct: 121 LKDIHALFMDTGLGRGAYSLIGQGKVDEILSSRPEERRSIIEEAAGIVKYRHRKEEALRK 180

Query: 157 --RRMIDFERL------MRGRNRLLTEGYFDSSWC-----SSIEAQMAEL---GVKINIA 200
                 D  R+      + GR   L E    +         +   +++        +++ 
Sbjct: 181 LTSAQQDLNRVSDIINELSGRIDPLAEQAEKAKQYKMLYEQAWNLELSLYKRDWDDLSVK 240

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
             ++ + L SL +EY  +      +++       K + S   LKE+  +
Sbjct: 241 VNDLASQLESLKLEYKDERPALEEEITQAKSEFLKIEASISLLKEQILE 289



 Score = 37.2 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 67/186 (36%), Gaps = 19/186 (10%)

Query: 174  TEGYFDSSWCSSIEAQM------AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
             +   D     S  A+M      AE   +  + R   +    + + E   + +   +   
Sbjct: 966  KQARSDLQDLKSRMAEMGAVNAGAEDEYQEVMKRYHFLEEQRADLEE--SRNSLEQLIDE 1023

Query: 228  LTGFLDGKFDQSFCALKEEYA---KKLFDGRKMDS-MSRRTLIGPHRSDLIVDYCDKAIT 283
            L   +  +F+ +F  + + ++   ++LF G      ++    +             K  +
Sbjct: 1024 LNKLMSSQFENAFKIINKNFSHVFEQLFGGGGASMNLTGGDALTCGIEITARPPGKKNQS 1083

Query: 284  IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG- 342
            ++  S GE+ +  + +  A  +        +P  +LDEI A LDE   N     +++   
Sbjct: 1084 LSLLSGGERALTAIALLFAILKY-----KPSPFCVLDEIEASLDEANVNRFAEYLSNTSN 1138

Query: 343  -SQIFM 347
              Q  +
Sbjct: 1139 EVQFIV 1144


>gi|326803886|ref|YP_004321704.1| chromosome segregation protein SMC [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650714|gb|AEA00897.1| chromosome segregation protein SMC [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 1186

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A    +  D   T  VG NG GK+NI EA+   L     +  R   
Sbjct: 1   MYLKTIEMVGFKSFAEKTRVELDQGFTAIVGPNGSGKSNITEAVKWVLGEQSAKSLRGKR 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRCL-QINDVVIR 111
             DV   GS S     +       +  + + D+    + +  R  RS   + +IN    R
Sbjct: 61  MDDVIFSGSQSRRQSQYAQVVLTFDNRDRVLDMDSDEVSVLRRYTRSGDSIYKINGQNCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|296127643|ref|YP_003634895.1| DNA repair protein RecN [Brachyspira murdochii DSM 12563]
 gi|296019459|gb|ADG72696.1| DNA repair protein RecN [Brachyspira murdochii DSM 12563]
          Length = 574

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 69/201 (34%), Gaps = 22/201 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFR--RASYAD 63
           +K+L I  F     L++ F +   +  G+ G GK+ I+ A+  ++  +   R   ++   
Sbjct: 2   LKYLEIRNFVLIDKLKINFSSGFNVLTGETGAGKSIIISALELITGEKGSIRMVGSNGDR 61

Query: 64  VTRIGSPSFFSTFARVEGMEGLADIS-------IKLETRDDRSVRCLQIN-DVVIRVVDE 115
           +   G+    S+   V+      +I        IK E   D   +    N  V +  + E
Sbjct: 62  LIVTGNFKLQSSSEIVKNKLKEWNIEINNDELTIKREITKDGKSKSFINNVGVKVAELKE 121

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV-----FAIDPRHRRRM----IDFERLM 166
           L   +           +F+        F D  +           H  ++      +  + 
Sbjct: 122 LGDLIVDIHGQHEHQSLFN--PANHINFYDSYLNIEDKLENYKNHYYKLTKLIRQYNEIS 179

Query: 167 RGRNRLLTEGYFDSSWCSSIE 187
           + +N +L E  F       IE
Sbjct: 180 QNKNSILKEKSFLEYAIDEIE 200


>gi|300120555|emb|CBK20109.2| unnamed protein product [Blastocystis hominis]
          Length = 421

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 47/110 (42%), Gaps = 10/110 (9%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRASYA 62
           ++ +++  F++Y    +  F  +    VG NG GK+ +++AI   + G   +  R + Y+
Sbjct: 4   LEQVSVFHFKSYDNEQKYRFSEKLNCIVGRNGSGKSALIDAIC-CALGFDLKRLRVSKYS 62

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           ++              ++   G  ++++K    D +   C + N   +  
Sbjct: 63  ELITHQKE---KCHVELQ-FGGKKNVTLKFSA-DTQGTVCFRYNGKQLSR 107


>gi|315586360|gb|ADU40741.1| conserved hypothetical protein [Helicobacter pylori 35A]
          Length = 394

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I+ + I  F+N+    +    +  I  G+N  GK+N+LEA+  L
Sbjct: 2  IQSVRIKNFKNFKDTTIDGFTKLNIITGENNAGKSNLLEALYCL 45


>gi|317051439|ref|YP_004112555.1| DNA repair protein RecN [Desulfurispirillum indicum S5]
 gi|316946523|gb|ADU65999.1| DNA repair protein RecN [Desulfurispirillum indicum S5]
          Length = 554

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 68/213 (31%), Gaps = 27/213 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        + + F  Q  I  G+ G GK+ I++A+  +   +     +  ++ R
Sbjct: 2   LQELTIKNLAIIKEVTVNFHHQLNILTGETGAGKSIIIDALGLICGAK-----APKELIR 56

Query: 67  IGSPS------FFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQIND--VVIRV 112
            G  S      F +    +  +    DI       I     +      + +N     +  
Sbjct: 57  SGEESMEVQALFENLHPELCQLLREQDIDCDDDQLIIRRVVNVNGQNKVYVNAAMQPVAF 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRN 170
           +  L  HL           +          FLD  +        +R    D+ R  R  +
Sbjct: 117 LKTLADHLVTIHAQNHHQMLLQ--PARHVSFLDAFLEAPQQLETYREHYQDYRRKRRHYD 174

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
              +           I+ Q+     +I+ AR++
Sbjct: 175 EAASRVREARQRLDFIQGQL----EEIDSARLQ 203


>gi|295836880|ref|ZP_06823813.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|197699113|gb|EDY46046.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 375

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 12/93 (12%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG------- 53
          M++R  ++ + +S +++     L      T+ VG NG GK+N++EA+  L          
Sbjct: 1  MSHR--VRRIAVSGYKSIHEAELALTP-VTLLVGPNGAGKSNLIEAVELLGRLVDGELGM 57

Query: 54 -RGFRRASYADVTRIGSPSFFSTFARVEGMEGL 85
            G R    A +   G+        RVE  +  
Sbjct: 58 EVGLRGGPAA-LLHDGAKGARGIGLRVEAEDDH 89


>gi|184155733|ref|YP_001844073.1| DNA repair protein RecN [Lactobacillus fermentum IFO 3956]
 gi|260663550|ref|ZP_05864440.1| DNA repair protein RecN [Lactobacillus fermentum 28-3-CHN]
 gi|183227077|dbj|BAG27593.1| DNA repair protein RecN [Lactobacillus fermentum IFO 3956]
 gi|260552091|gb|EEX25144.1| DNA repair protein RecN [Lactobacillus fermentum 28-3-CHN]
 gi|299783412|gb|ADJ41410.1| DNA repair protein RecN [Lactobacillus fermentum CECT 5716]
          Length = 564

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/346 (17%), Positives = 117/346 (33%), Gaps = 40/346 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L FD   T+  G+ G GK+ I++A+S L+ GRG       +  R
Sbjct: 2   LQELTIDNLAIIDHLSLEFDDHMTVLTGETGAGKSIIIDAVSLLAGGRG-----SQEFIR 56

Query: 67  IGSPSF-FSTFARV-----------EGMEGLADISIKLETRDDRSVR-CLQINDVVIR-- 111
            G           +           E      D ++ +     RS R  +++N  ++   
Sbjct: 57  KGEEKLSLQGQFEIPKLPGYVAQLDELGISHDDGALIISREIHRSGRNTIRVNGTLVNAA 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA----IDPRHRRRMIDFERLMR 167
            + +L   L           +           LD+   A    +   ++ +  ++ RL  
Sbjct: 117 TLKQLGSGLVDIQGQNEHQLLLR--PEAHLGMLDQFANAKVQPLLASYQEQYQEYRRLEA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
             N+        +     +  Q+ E+G     A  E       LI E  + E+F  I  +
Sbjct: 175 AVNQKKANEQQWAQRLDMLRYQVKEIGDADLRADEE-----DELIAERERLEHFQQIATT 229

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS-RRTLIGPHRSDLIVDYCDKAITIAH 286
           L   +    D     + ++ A  +   +++         +    SD      D A    H
Sbjct: 230 LQQVVGVLNDDEEAPVLDQVATIMNAAQEIAPFDPEYDDLAQSLSDAYYSLQDVANQAGH 289

Query: 287 ----GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
                   E+++  +   LA    + +  G +    L ++ A+ D+
Sbjct: 290 QLDSLEFDEERLATINARLATIADLEHKYGES----LADVLAYYDQ 331


>gi|167463676|ref|ZP_02328765.1| chromosome segregation SMC protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382557|ref|ZP_08056437.1| chromosome condensation and segregation SMC ATPase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153473|gb|EFX45878.1| chromosome condensation and segregation SMC ATPase-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 1192

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +S F+++A    L F    T  VG NG GK+NI + I ++   +  +  R   
Sbjct: 1   MFLKRIELSGFKSFADKTELEFVQGITAVVGPNGSGKSNISDGIRWVLGETSAKSLRGGK 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS +     +  V         S+ L+  +    R +  + 
Sbjct: 61  MEDVIFAGSDARKAVNYGEVSLTLDNTSQSLPLDFNEVTVTRRVHRSG 108


>gi|145609998|ref|XP_001409979.1| hypothetical protein MGG_12590 [Magnaporthe oryzae 70-15]
 gi|145017377|gb|EDK01740.1| hypothetical protein MGG_12590 [Magnaporthe oryzae 70-15]
          Length = 1134

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 13/136 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
            I  + +  F  Y     +      + +G NG GK++++ AI  L  G       R    
Sbjct: 88  AILRVTVENFVTYEHAEFLPGPNLNMVIGPNGTGKSSLVCAIC-LGLGYPANVLGRATKL 146

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDV--VIRVVDELNK 118
            +  + G           +  +   +  IKL     +   R   +N      R +  L  
Sbjct: 147 NEFVKHGKDEATIEIELQKRPKDARNPVIKLRLLSTEEQKRQFWLNGEQVPQREIHRLMG 206

Query: 119 HLRISW-----LVPSM 129
             RI        +P  
Sbjct: 207 KFRIQIDNLCQFLPQD 222


>gi|254440961|ref|ZP_05054454.1| DNA repair protein RecN [Octadecabacter antarcticus 307]
 gi|198251039|gb|EDY75354.1| DNA repair protein RecN [Octadecabacter antarcticus 307]
          Length = 549

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRSLDIRDMLIIDRLELAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFSTFARVEGMEGLA--DISIKLETRDDRSVRCLQINDVVIRV 112
            G+       A  +  E  A  D+  +   R D ++   +IN    R 
Sbjct: 57  QGADQG-EVIAEFDLAENHAAWDVLREAGFRYDDALILRRINGRDGRK 103


>gi|328948170|ref|YP_004365507.1| chromosome segregation protein SMC [Treponema succinifaciens DSM
           2489]
 gi|328448494|gb|AEB14210.1| chromosome segregation protein SMC [Treponema succinifaciens DSM
           2489]
          Length = 984

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 21/150 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           + +K L I  F+++A    + F    T  +G NG GK+N+++AI   L+  R    R  S
Sbjct: 1   MFLKSLEIFGFKSFADRTHINFADGITALLGPNGCGKSNVVDAIKWVLAENRSKNLRAES 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             DV   G+ +    + A V       +  + LE  +    R L  N        E   +
Sbjct: 61  MEDVIFNGTETRPALSMAEVTLTIANENGLLPLEDSEIAIKRRLYRNGEN-----EYFIN 115

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVF 149
                          G S  R+ F+D  V 
Sbjct: 116 SNQV-----------GASSIRKLFMDTGVG 134


>gi|303391639|ref|XP_003074049.1| chromosome segregation ATPase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303303198|gb|ADM12689.1| chromosome segregation ATPase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 1025

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 13/120 (10%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYADV 64
            + +  F+ +  + L F        G NG GK++I  A+  L+ G       R  S  + 
Sbjct: 11  SMELENFQTFRKISLKFCPSFNFIAGPNGSGKSSIANAM-VLAFGGTPRIIGRGKSIGEY 69

Query: 65  TRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV--VDELNKHLR 121
            + G           +EG E      I  + +         I+    R    +EL   L+
Sbjct: 70  VKFGENEARIKVVVWIEGRETKISRHISKDNQSK-----YFIDGKACRKMEYEELIGRLK 124


>gi|260103275|ref|ZP_05753512.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
 gi|260082916|gb|EEW67036.1| conserved hypothetical protein [Lactobacillus helveticus DSM
          20075]
          Length = 495

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 5  IKIKFLNISEFRNY-------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + IK + +  F+++         + + F +     VG+N VGKT IL A+ FL+ G
Sbjct: 1  MYIKKMVLHNFKSFSSNNSEDEDIEIPFASGVNYLVGNNNVGKTTILNALDFLTTG 56



 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 32/141 (22%)

Query: 238 QSFCALKEEYAKKLFDG----------RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
             F ALKE + K   D           R +D +      G  + +   D+ +    I  G
Sbjct: 191 PEFAALKEAHKKAFGDNGIQKYLNDTERNIDEIL-SDQFGDSKMEFKFDFPNVNDLIKKG 249

Query: 288 ---ST-------------GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
              ST             G Q+ + + I         +T       L+DE   +L    +
Sbjct: 250 NILSTENGIETDISEKGNGLQRALALAII--QVYSKVSTKDENTQFLIDEPEIYLHPKAQ 307

Query: 332 NALFRI---VTDIGSQIFMTG 349
           + L      ++  G Q+F+T 
Sbjct: 308 DKLIDSLVNLSKNGDQVFITT 328


>gi|119192414|ref|XP_001246813.1| hypothetical protein CIMG_00584 [Coccidioides immitis RS]
          Length = 744

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 108/337 (32%), Gaps = 72/337 (21%)

Query: 4   RIKIKFLNISEFRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           R KI  L+I   R++ +     + F    T+ VG NG GKT I+E + + + G       
Sbjct: 428 RSKIDKLSILGVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG------- 480

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR---SVRCLQINDVVIRVVDELN 117
             ++     P      A +   +   +  + +    +R   S R  +++ ++ + +    
Sbjct: 481 --EL-----PPNSKGGAFIHDPKKTLEGQLLMTKEGERTSISSRVAELDQIMPQYLGVSR 533

Query: 118 KHLRISWLVPSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-- 173
             L         + +   S  S+ +++F +        ++ + + + + L + +N  L  
Sbjct: 534 AILDNVIFCHQDESLWPLSEPSVLKKKFDEIFEAQ---KYTKAIDNIKALRKKQNEELAK 590

Query: 174 --------TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI----MEYVQKENF 221
                    E    +        Q+ E    +     E+   +          + + E++
Sbjct: 591 YKIMEQYAKEDKDKADRAEKRSIQLQEEIEALRAESHELSKEMKKAADLADKAWKESESY 650

Query: 222 PHIKLSLTG---------------------------FLDGKFDQ--SFCALKEEYAKKLF 252
             I  +L G                           +L+   +Q  S  A   E  + L 
Sbjct: 651 AEILGALEGKRIEVKSIQTSIDNLKQHLVEVDESEEWLESTLEQFGSRQAEYREQEESLK 710

Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           +         R  +G       +    K I  +  ST
Sbjct: 711 ENESRPFRRGRMRLGIK----YLKMIKKPILTSIAST 743


>gi|10956553|ref|NP_052196.1| hypothetical protein pLH1_p08 [Lactobacillus helveticus]
 gi|2687741|emb|CAA10967.1| hypothetical protein [Lactobacillus helveticus]
          Length = 495

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 5  IKIKFLNISEFRNY-------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + IK + +  F+++         + + F +     VG+N VGKT IL A+ FL+ G
Sbjct: 1  MYIKKMVLHNFKSFSSNNSEDEDIEIPFASGVNYLVGNNNVGKTTILNALDFLTTG 56



 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 32/141 (22%)

Query: 238 QSFCALKEEYAKKLFDG----------RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
             F ALKE + K   D           R +D +      G  + +   D+ +    I  G
Sbjct: 191 PEFAALKEAHKKAFGDNGIQKYLNDTERNIDEIL-SDQFGDSKMEFKFDFPNVNDLIKKG 249

Query: 288 ---ST-------------GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
              ST             G Q+ + + I         +T       L+DE   +L    +
Sbjct: 250 NILSTENGIETDISEKGNGLQRALALAII--QVYSKVSTKDENTQFLIDEPEIYLHPKAQ 307

Query: 332 NALFRI---VTDIGSQIFMTG 349
           + L      ++  G Q+F+T 
Sbjct: 308 DKLIDSLVNLSKNGDQVFITT 328


>gi|289627047|ref|ZP_06460001.1| hypothetical protein PsyrpaN_18194 [Pseudomonas syringae pv.
          aesculi str. NCPPB3681]
 gi|289646297|ref|ZP_06477640.1| hypothetical protein Psyrpa2_00870 [Pseudomonas syringae pv.
          aesculi str. 2250]
 gi|330866783|gb|EGH01492.1| hypothetical protein PSYAE_05865 [Pseudomonas syringae pv.
          aesculi str. 0893_23]
          Length = 438

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  + +  F++Y S  L   A  T  +G N  GK+N+LEAI  L+     + +   D+TR
Sbjct: 2  LISIELKNFKSYESASLPLAA-MTFLIGANASGKSNVLEAIRLLNWLA--KGSRLEDITR 58


>gi|221121736|ref|XP_002162125.1| PREDICTED: similar to structural maintenance of chromosomes 1A,
           partial [Hydra magnipapillata]
          Length = 164

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 50/112 (44%), Gaps = 3/112 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYADV 64
           ++ L I  F++Y    L+  ++ +  +G NG GK+N+++AISF+   +    R  S  ++
Sbjct: 5   LEKLEIINFKSYKGKHLIGFSKFSAIIGPNGCGKSNMMDAISFVLGEKTSNLRVKSVKEL 64

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
              G+P         +      D +   E ++    R +  +    R+  +L
Sbjct: 65  I-HGAPIKQPVATTAQVSAHYIDYNKDGEKQETIFCRRIVGSGTEYRINGKL 115


>gi|170052597|ref|XP_001862294.1| structural maintenance of chromosomes protein 1A [Culex
           quinquefasciatus]
 gi|167873449|gb|EDS36832.1| structural maintenance of chromosomes protein 1A [Culex
           quinquefasciatus]
          Length = 1227

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 11/132 (8%)

Query: 1   MTNRIKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           MT    ++F+ +  F++Y   + +    + +  +G NG GK+N ++AISF+   +    R
Sbjct: 1   MTPSAFLQFIEVENFKSYRGRVTIGPLKKFSAVIGPNGSGKSNFMDAISFVMGEKTTSLR 60

Query: 58  RASYADVTRIGS------PSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQINDVVI 110
                ++   G+       +  S  A+    +G  + + K  +     S    +IN  V+
Sbjct: 61  VRKLNELI-HGASIGRPISNRASVMAKFIITDGEGEQTQKSFQRSVIGSSSEYRINGSVV 119

Query: 111 RVVDELNKHLRI 122
                L +  ++
Sbjct: 120 ATNTYLQELEQV 131


>gi|317495798|ref|ZP_07954161.1| chromosome segregation protein SMC [Gemella moribillum M424]
 gi|316913975|gb|EFV35458.1| chromosome segregation protein SMC [Gemella moribillum M424]
          Length = 1184

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 14/155 (9%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +K+  + ++ F+++       F       VG NG GK+NI++AI   L     +  R +S
Sbjct: 1   MKLVKVEVTGFKSFQKKTTFEFKNNLIGVVGPNGSGKSNIIDAIRWVLGEQSAKNLRGSS 60

Query: 61  YADVTRIGSPSFFS-TFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNK 118
             DV   G+       FA V       + S +++ R          I++   R+ D  N 
Sbjct: 61  MKDVIFSGTEDVKRKNFAEVAVTFSNGEESCEIKRRLYRNGDNEYFIDNKKARLKDVTNM 120

Query: 119 HLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           +L                ++ I S   ++RR  ++
Sbjct: 121 YLDFGINKESYSIITQGKVEDIISSKPVDRRAIIE 155


>gi|257866577|ref|ZP_05646230.1| chromosome partition protein SMC [Enterococcus casseliflavus EC30]
 gi|257872907|ref|ZP_05652560.1| chromosome partition protein SMC [Enterococcus casseliflavus EC10]
 gi|257800535|gb|EEV29563.1| chromosome partition protein SMC [Enterococcus casseliflavus EC30]
 gi|257807071|gb|EEV35893.1| chromosome partition protein SMC [Enterococcus casseliflavus EC10]
          Length = 1192

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 75/216 (34%), Gaps = 32/216 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+ + T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADRTVIDFEHRVTAVVGPNGSGKSNITEAIRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS      +       ++  +    +    I +  R  R+      +N    R
Sbjct: 61  MPDVIFAGSDTRRALNIAEVTIVLDNSDHYLPMDYSEISVTRRLRRTGESDFFLNKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IFS    +RR   +             +   +
Sbjct: 121 LKDIQELFMDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEA--------AGVLKYKQ 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSS---IEAQMAELGVK 196
           R  +   +L       S        +E Q+  L  +
Sbjct: 173 RKKKAEQKLFETEDNLSRLQDIIYELEDQLVPLAAQ 208


>gi|218673272|ref|ZP_03522941.1| hypothetical protein RetlG_17611 [Rhizobium etli GR56]
          Length = 524

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          +++  L I  F+N   + + FD     T+ +G+NG GK+N++EA+
Sbjct: 1  MRVDSLKIRSFKNLTDITIDFDEGELSTVIIGENGTGKSNVIEAL 45


>gi|301093748|ref|XP_002997719.1| structural maintenance of chromosomes protein, putative
           [Phytophthora infestans T30-4]
 gi|262109968|gb|EEY68020.1| structural maintenance of chromosomes protein, putative
           [Phytophthora infestans T30-4]
          Length = 1183

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + I+ + +  F++YA+  +V  FD +     G NG GK+N+L+AI F   ++     R  
Sbjct: 1   MHIEEIILDGFKSYATRTVVSGFDPRFNAITGLNGSGKSNVLDAICFVLGITNLSQVRAN 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          +            G E    IS+  +       + L    
Sbjct: 61  NLQELVYKQGQAGVTKASVTIVFNNQDAKASPVGYEQYEQISVARQVVIGGRNKYLINGH 120

Query: 108 VVI 110
              
Sbjct: 121 TAQ 123


>gi|256271712|gb|EEU06751.1| Smc3p [Saccharomyces cerevisiae JAY291]
          Length = 1230

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 98/303 (32%), Gaps = 26/303 (8%)

Query: 79   VEGMEGLADISIKLETRDDRSVRCLQINDVV-IRVVDELNKHLRISWLVPSM------DR 131
            +E       + +K      +SV    I     +   +EL + +R   L+P          
Sbjct: 912  LEKANNQQRLLLKKLDNFQKSVEKTMIKKTTLVARREELQQRIREIGLLPEDALVNDFSD 971

Query: 132  IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
            I S   ++R   ++  +  +   ++R   +F++    R  L            SI+  + 
Sbjct: 972  ITSDQLLQRLNDMNTEISGLKNVNKRAFENFKKFNERRKDLAERASELDESKDSIQDLIV 1031

Query: 192  ELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            +L  +   A       +S       ++       KL +    D   D       +  A+ 
Sbjct: 1032 KLKQQKVNAVDSTFQKVSENFEAVFERLVPRGTAKLIIHRKNDNANDHDESIDVDMDAES 1091

Query: 251  LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST--GEQKVV-LVGIFLAHARLI 307
                   DS    T +        V +  K     H     G QK V  + + LA     
Sbjct: 1092 NESQNGKDSEIMYTGVSIS-----VSFNSKQNEQLHVEQLSGGQKTVCAIALILA----- 1141

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFM 365
                  A   L DEI A LD+  R A+  ++ ++   +Q   T       D L    KF 
Sbjct: 1142 IQMVDPASFYLFDEIDAALDKQYRTAVATLLKELSKNAQFICTT---FRTDMLQVADKFF 1198

Query: 366  RIS 368
            R+ 
Sbjct: 1199 RVK 1201



 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60
           + IK + I  F+ Y +  +   F     + +G NG GK+N   AI F+        +R  
Sbjct: 1   MYIKRVIIKGFKTYRNETIIDNFSPHQNVIIGSNGSGKSNFFAAIRFVLSDDYSNLKREE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR-DDRSVRCLQINDVVIRVVDELNKH 119
              +   GS       A VE +    D S+ L +    R    + I   V    D+   +
Sbjct: 61  RQGLIHQGS-GGSVMSASVEIVFHDPDHSMMLPSGVLSRGDDEVTIRRTVGLKKDDYQLN 119

Query: 120 LRIS 123
            R  
Sbjct: 120 DRNV 123


>gi|311278010|ref|YP_003940241.1| ATP-dependent endonuclease [Enterobacter cloacae SCF1]
 gi|308747205|gb|ADO46957.1| ATP-dependent endonuclease [Enterobacter cloacae SCF1]
          Length = 771

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + ++ L +  FR    + +   +  +IFVG N  GKT++  A+     G+          
Sbjct: 1  MHLRKLAVRNFRRLHDVVIDLASDISIFVGANNSGKTSVGHALQLF-TGKSRFNIHD--- 56

Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLET 94
              +  +       EG +  +  S++L+ 
Sbjct: 57 --FNAECWTDIVTFGEGADAASLPSLELDI 84


>gi|297816760|ref|XP_002876263.1| hypothetical protein ARALYDRAFT_323999 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322101|gb|EFH52522.1| hypothetical protein ARALYDRAFT_323999 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1257

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 57/151 (37%), Gaps = 17/151 (11%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           KI  L +  F++Y     +      T  +G NG GK+N+++AISF+   R    R +   
Sbjct: 10  KILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGSQLK 69

Query: 63  DVT-----RIGSPSFFSTFARV-----EGMEGLADISI----KLETRDDRSVRCLQINDV 108
           D+      R         F R+     +G+E     +I      E R D  V  L   + 
Sbjct: 70  DLIYAFDDRDKEQRGRRAFVRLVYQMDDGVELHFTRTITSAGGSEYRIDNRVVNLDEYNG 129

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSME 139
            +R +  L K          ++ I S    E
Sbjct: 130 KLRSLGILVKARNFLVFQGDVESIASKNPKE 160


>gi|289808268|ref|ZP_06538897.1| recombination protein F [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 91

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 3/88 (3%)

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 F    R++G E    I +  + + D  VR   I+      + EL   + +  + 
Sbjct: 2   RHEQEAFVLHGRLQGEERETSIGLTKDKQGDSKVR---IDGTDGHKIAELAHLMPMQLIT 58

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPR 154
           P    + +G      R L    F   P 
Sbjct: 59  PEGFTLLNGGPNTEERSLTGDAFTTKPD 86


>gi|52080197|ref|YP_078988.1| chromosome segregation SMC protein-like protein [Bacillus
          licheniformis ATCC 14580]
 gi|52785574|ref|YP_091403.1| hypothetical protein BLi01815 [Bacillus licheniformis ATCC 14580]
 gi|52003408|gb|AAU23350.1| chromosome segregation SMC protein homolg [Bacillus licheniformis
          ATCC 14580]
 gi|52348076|gb|AAU40710.1| Smc [Bacillus licheniformis ATCC 14580]
          Length = 1186

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K L++  F+++   + + F    T  VG NG GK+NI +AI ++      +  R   
Sbjct: 1  MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGGK 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFAGSDS 71


>gi|19074490|ref|NP_585996.1| CUT3-LIKE CHROMOSOME SEGREGATION PROTEIN [Encephalitozoon cuniculi
           GB-M1]
 gi|19069132|emb|CAD25600.1| CUT3-LIKE CHROMOSOME SEGREGATION PROTEIN [Encephalitozoon cuniculi
           GB-M1]
          Length = 1112

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 11/115 (9%)

Query: 5   IKI--KFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
           +K+  + + I  F++Y    +    D + T  VG NG GK+NI+++I F+   R    R 
Sbjct: 8   MKLGLESITIHNFKSYRGTHVIRGLDPKFTAIVGANGSGKSNIIDSILFVLGFRARRMRH 67

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
           +S AD+   G       F  +    G     I+ E       R L ++   +   
Sbjct: 68  SSLADLIYSGDGKEDMCFVEL----GFNKFRIRREAYLSGRARYL-VDGEEVSSA 117


>gi|322806717|emb|CBZ04286.1| chromosome partition protein smc [Clostridium botulinum H04402
          065]
          Length = 1193

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K + I  F+++A    LVF    T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1  MFLKSIEIRGFKSFADKTELVFKQGVTAIVGPNGSGKSNISDAVRWVLGEQSVKSLRGSK 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MEDVIFAGTQ 70


>gi|303388193|ref|XP_003072331.1| chromosome segregation protein [Encephalitozoon intestinalis ATCC
           50506]
 gi|303301470|gb|ADM10971.1| chromosome segregation protein [Encephalitozoon intestinalis ATCC
           50506]
          Length = 1002

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 95/325 (29%), Gaps = 70/325 (21%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F+ Y    +    D       G NG GK+N+L+ I F   L   +  R  
Sbjct: 1   MFIKEIVLDGFKCYEEKVVVANLDRSFNAVTGMNGSGKSNVLDGILFALGLEGTKALRAN 60

Query: 60  SYADVTRIGSPSFFSTFARVE--------GMEGLADISIKLETRDDRSVRCLQINDVVI- 110
           +  ++          +             G E   +I +      +   +C   N +   
Sbjct: 61  NIKELINSNRKECKVSVVMCNKEKARSPPGYEHYDEICVSRAIDSEGRTKCYINNHLCTF 120

Query: 111 RVVDELN-----------------KHLRISWL--VPSMDRIFSGLSMER----------- 140
             + +L                   H+          +  +    +  +           
Sbjct: 121 STLSKLCGSMGLTSRGSFSSVVMQGHITKVLSMKSSDLRGLIEETAGTKSYEKEKEKAMS 180

Query: 141 ---------RRFLDRMVFAIDPRH---RRRMIDF--ERLMRGRNRLLTEGYFD------- 179
                    R   + +   I P +   R     F   R ++ R R+L++   +       
Sbjct: 181 MIEKKEEKLREAQEMLKRRISPFYDKLREERARFLETRDLKERKRILSQREQEVKEILVV 240

Query: 180 ---SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                    ++  +     ++    +E+I      I    ++ +   IK S+ G      
Sbjct: 241 DEVREEIDVLDRSLRSYIEEM--KSLELIEKRIEEISGAKEEVDIVWIKASIDGEKLKLD 298

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMS 261
           +     L+E   KK  + R M+ + 
Sbjct: 299 EMKGKGLEERLLKKKEEVRMMEGLR 323


>gi|317129237|ref|YP_004095519.1| chromosome segregation protein SMC [Bacillus cellulosilyticus DSM
          2522]
 gi|315474185|gb|ADU30788.1| chromosome segregation protein SMC [Bacillus cellulosilyticus DSM
          2522]
          Length = 1189

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K L++  F+++   L + F    T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 1  MFLKRLDLVGFKSFAERLSIDFVKGVTAVVGPNGSGKSNISDAIRWVLGEQSAKNLRGAK 60

Query: 61 YADVTRIGSPS 71
            DV   GS S
Sbjct: 61 MEDVIFSGSDS 71


>gi|269795511|ref|YP_003314966.1| DNA replication and repair protein RecN [Sanguibacter keddieii DSM
           10542]
 gi|269097696|gb|ACZ22132.1| DNA replication and repair protein RecN [Sanguibacter keddieii DSM
           10542]
          Length = 583

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 64/370 (17%), Positives = 116/370 (31%), Gaps = 65/370 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + + I+ L +      +  R+ F    T+  G+ G GKT IL  +  L  G+     +
Sbjct: 1   MLHEMSIENLGV-----ISRTRVEFSPGLTVITGETGAGKTMILSGLGLLMGGK-----A 50

Query: 61  YADVTRIGSPSFF----------STFARVEGMEGLAD-----ISIKLETRDDRSVRCLQI 105
            A V R G+ +            S  ARV+    + D     + ++      RS   L  
Sbjct: 51  DAQVVRTGTDAAVVEGRVVADSASLAARVDETGAVLDDDGSLLIVRTVAAQGRSRTHLGG 110

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
             V   V+ +L + L    +    D++       +R  LD     +       + ++  L
Sbjct: 111 RSVPQAVLADLAEDL--VTIHGQSDQMRLRSPQRQREALDSFAGEVV---TTALAEYRAL 165

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQKENFPHI 224
              R                  A++ EL G     AR   +  L    +E V  +     
Sbjct: 166 WNERAASA--------------AELEELVGRAQERAREAELLRLGLAEVERVAPQPGEDT 211

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
           +L+     + +   +   L+      L      D        G +  +L+          
Sbjct: 212 ELA----QEAERLSNSEELRTAAQDALLAVAGDDLADVAVGSGSNAVELV------DRAR 261

Query: 285 AHGSTGEQ---------KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                G Q         K +   +  A A + +  +G+   L  D       E +R  L 
Sbjct: 262 RLAEHGGQFDPELEAVGKSLA-SVAYALADVGTELSGYLAALDADPARLETVEARRAELG 320

Query: 336 RIVTDIGSQI 345
            +    G  +
Sbjct: 321 HLTRSYGETV 330


>gi|281422000|ref|ZP_06252999.1| conserved hypothetical protein [Prevotella copri DSM 18205]
 gi|281403958|gb|EFB34638.1| conserved hypothetical protein [Prevotella copri DSM 18205]
          Length = 585

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 17/87 (19%)

Query: 5  IKIKFLNISEFRNY---------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + I  L +  FR Y           L + F +   + +G+N  GKT I++AI ++     
Sbjct: 1  MYISELKLWNFRKYGADDFDLTNPHLTVPFKSGMNVLIGENDSGKTAIIDAIKYV----- 55

Query: 56 FRRASYADVTRIGSPSFF--STFARVE 80
           +  +Y +  RI    F+      R+E
Sbjct: 56 LKTNAY-ESIRILQDDFYNDKDHLRIE 81


>gi|114799181|ref|YP_760618.1| chromosome segregation protein SMC [Hyphomonas neptunium ATCC
           15444]
 gi|114739355|gb|ABI77480.1| chromosome segregation protein SMC [Hyphomonas neptunium ATCC
           15444]
          Length = 1153

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           ++I  L I+ F+++     +  +   T  VG NG GK+N+LEA+ +          R   
Sbjct: 1   MQITELRIAGFKSFVDPQTVPIEPGLTGIVGPNGCGKSNLLEALRWAMGANSAKAMRGGE 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRS-VRCLQINDV 108
             D+   G+              ++  +  A         +++E +  R      +IN  
Sbjct: 61  MDDLIFSGAASRPARETAEVTLVLDNSKRTAPPEFNGADLLEIERKLKRGAGSSYRINGR 120

Query: 109 VIRVVD--ELNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      +       RRR L+
Sbjct: 121 TVRGKDIQLLFADASTGANSPALVRQGQISELIGSKPQNRRRILE 165


>gi|257056534|ref|YP_003134366.1| DNA replication and repair protein RecN [Saccharomonospora viridis
           DSM 43017]
 gi|256586406|gb|ACU97539.1| DNA replication and repair protein RecN [Saccharomonospora viridis
           DSM 43017]
          Length = 593

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 88/286 (30%), Gaps = 59/286 (20%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L      T+  G+ G GKT ++  +  LS GR      
Sbjct: 1   MLAEMRIQGLGVID-----EAVLELHPGFTVVTGETGAGKTMVVTGLHLLSGGRS----- 50

Query: 61  YADVTRIGSPSFFST--FARVEGMEGLADIS-IKLETRDDRSVRCLQINDVVIRVVDELN 117
            A   R GS        F  + G + L  +S    ET +D SV  ++      R    L 
Sbjct: 51  DASKVRAGSAKAVVEGRFTEISGEQALRILSDSGAETDEDGSVIAVRSVGADGRSRAHLG 110

Query: 118 KHLRISWL---VPSMDRIFSGL--------SMERRRFLDRMVFAIDPRHRRRMIDFERL- 165
                  +   +        G           E+R  LDR            + D+ +  
Sbjct: 111 GRSVPVGVLGKLSEQLLAVHGQNDQLRLLRPAEQRAVLDRFAGE---DVAGPLADYRKTR 167

Query: 166 -------------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
                              +  +  LL  G  +         +  EL  ++   R+  ++
Sbjct: 168 QEWLSVARELEERRSRSRELAQQADLLRHGLAEIEAVDPAPGEDVELTEQV--KRLAAVD 225

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFD-QSFCALKEEYAKKL 251
            L       +         +++TG  DG  D      L  E  ++L
Sbjct: 226 ELRDTATAAL---------IAVTGASDGDPDVPGALGLLAEARRRL 262


>gi|160331871|ref|XP_001712642.1| smc4 [Hemiselmis andersenii]
 gi|159766091|gb|ABW98317.1| smc4 [Hemiselmis andersenii]
          Length = 1248

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRG--F 56
          M N+I +K +  + F++Y  ++       +    +G NG GK+N L+AI F+   R    
Sbjct: 1  MENKIFLKSIRFTNFKSYKGIQEAGPCHPKINTIIGPNGSGKSNFLDAILFVLGKRAVQI 60

Query: 57 RRASYADVTRIGSPSF 72
          R    +D+  + +  F
Sbjct: 61 RFKKLSDLINLSASPF 76


>gi|153931137|ref|YP_001384627.1| chromosome segregation protein SMC [Clostridium botulinum A str.
          ATCC 19397]
 gi|153936718|ref|YP_001388144.1| chromosome segregation protein SMC [Clostridium botulinum A str.
          Hall]
 gi|152927181|gb|ABS32681.1| chromosome segregation protein SMC [Clostridium botulinum A str.
          ATCC 19397]
 gi|152932632|gb|ABS38131.1| chromosome segregation protein SMC [Clostridium botulinum A str.
          Hall]
          Length = 1193

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K + I  F+++A    LVF    T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1  MFLKSIEIRGFKSFADKTELVFKQGVTAIVGPNGSGKSNISDAVRWVLGEQSVKSLRGSK 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MEDVIFAGTQ 70


>gi|148380410|ref|YP_001254951.1| chromosome segregation protein SMC [Clostridium botulinum A str.
          ATCC 3502]
 gi|148289894|emb|CAL84002.1| chromosome partition protein Smc [Clostridium botulinum A str.
          ATCC 3502]
          Length = 1193

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K + I  F+++A    LVF    T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1  MFLKSIEIRGFKSFADKTELVFKQGVTAIVGPNGSGKSNISDAVRWVLGEQSVKSLRGSK 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MEDVIFAGTQ 70


>gi|71733473|ref|YP_274011.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554026|gb|AAZ33237.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 1162

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++      L G+ +      +  +   + + R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNDLVGQREAVIGNQEIGFEALVANQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|284053302|ref|ZP_06383512.1| condensin subunit Smc [Arthrospira platensis str. Paraca]
          Length = 1118

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 113/354 (31%), Gaps = 80/354 (22%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + ++ F+++  +  +      T+  G NG GK+NIL+A+ F   LS  +G R   
Sbjct: 2   VHIKRVELTNFKSFGGTTSIPLLPGFTVVSGPNGSGKSNILDALLFALGLSSSKGMRAER 61

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISI---------------------------KLE 93
             D+         +   RV     L+D++                            K E
Sbjct: 62  LPDLVNNSQSRKTTVETRVTVTFDLSDLTFPELEEEPTQLGGEGETVTEGEETGLVAKEE 121

Query: 94  TRDDRSVRCLQ---------INDVVIRVVDELNKHLRISWLVPSMDRIFSGL-------- 136
               R +R  +         IN        EL++ L    + P    +            
Sbjct: 122 WSVTRKLRVTKQGTYTSTYYINGEPC-TQTELHEQLNRLRIYPEGYNVVLQGDVTGIITM 180

Query: 137 -SMERRRFLDR--MVFAIDPRHRRRMIDF--------------ERLMRGRNRLLTEGYFD 179
              ERR  +D    V   D +                      + L+  R+RL  +    
Sbjct: 181 KPRERREIIDELAGVAQFDRKIVLAREKLDTVKEREERSRIVEQELISQRDRLAKD-RAK 239

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
           +     ++A++ E  +   I   + +      + E ++  +  H +L+          + 
Sbjct: 240 AEKYQKLKAELQEKSLWYAIGHYQTLQQQLWRLREQIEAGDRSHSELTEQFQQQQSQIKQ 299

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                E     +    + + +  ++ +    ++L             GSTG+++
Sbjct: 300 ATTTLETLNALVKAMGEEELLQLQSTLATQEAEL-------------GSTGQRR 340


>gi|227510451|ref|ZP_03940500.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190103|gb|EEI70170.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 1183

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +++K + I  F+++A   ++ F    T  VG NG GK+NI EAI   L     +  R + 
Sbjct: 1   MQLKSIEIIGFKSFAEKTKISFPNGMTGIVGPNGSGKSNIAEAIRWVLGEQSAKNLRGSR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS    S   A V  +   +D  +     + +  R L  N 
Sbjct: 61  MPDVIFSGSADRRSLNMAAVTLLLDNSDHYLDSPYSEIKVSRKLFRNG 108


>gi|195977758|ref|YP_002123002.1| DNA repair protein RecN [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195974463|gb|ACG61989.1| DNA repair protein RecN [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 566

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 90/259 (34%), Gaps = 27/259 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ L   R     +  +V R
Sbjct: 15  LLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMLLGAR-----ASTEVIR 69

Query: 67  IGS-----PSFFSTFA--RVEGMEGLADISIKLETRDDR-----SVRCLQIND--VVIRV 112
            G+       FFS  +   +  +   + IS++ E    R          +IN   V +  
Sbjct: 70  HGADKAEIEGFFSVDSNPHLAAVLAESGISMEEELILRRDIFANGRSVSRINGQMVTVST 129

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRR----FLDRMVFAIDPRHRRRMIDFERLMRG 168
           + +L + L    +    D+         +     F D +   +   +++    ++ L R 
Sbjct: 130 LKKLGQFL--VDIHGQHDQEELMRPQLHQHILDSFGDEVFDQLKQSYQQIFDRYKALRRQ 187

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMIN-ALSSLIMEYVQKENFPHIKL 226
                       +    +  Q+ E+    +     +++N     L+      +      L
Sbjct: 188 ALEKQKNEKEHQARLDLLAFQIGEIDAADLVRGEDDLLNQERQRLLNHKKIADTLTSAYL 247

Query: 227 SLTGFLDGKFDQSFCALKE 245
           SL         Q   ++ E
Sbjct: 248 SLDNEDFSSLSQVRSSMNE 266


>gi|170759730|ref|YP_001787764.1| chromosome segregation protein SMC [Clostridium botulinum A3 str.
          Loch Maree]
 gi|169406719|gb|ACA55130.1| chromosome segregation protein SMC [Clostridium botulinum A3 str.
          Loch Maree]
          Length = 1193

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K + I  F+++A    LVF    T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1  MFLKSIEIRGFKSFADKTELVFKQGVTAIVGPNGSGKSNISDAVRWVLGEQSVKSLRGSK 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MEDVIFAGTQ 70


>gi|168180667|ref|ZP_02615331.1| chromosome segregation protein SMC [Clostridium botulinum NCTC
          2916]
 gi|226949805|ref|YP_002804896.1| chromosome segregation protein SMC [Clostridium botulinum A2 str.
          Kyoto]
 gi|182668486|gb|EDT80465.1| chromosome segregation protein SMC [Clostridium botulinum NCTC
          2916]
 gi|226844084|gb|ACO86750.1| chromosome segregation protein SMC [Clostridium botulinum A2 str.
          Kyoto]
          Length = 1193

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K + I  F+++A    LVF    T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1  MFLKSIEIRGFKSFADKTELVFKQGVTAIVGPNGSGKSNISDAVRWVLGEQSVKSLRGSK 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MEDVIFAGTQ 70


>gi|115738150|ref|XP_792299.2| PREDICTED: similar to structural maintenance of chromosomes protein
           6 [Strongylocentrotus purpuratus]
 gi|115944203|ref|XP_001188071.1| PREDICTED: similar to structural maintenance of chromosomes protein
           6 [Strongylocentrotus purpuratus]
          Length = 502

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 42/137 (30%), Gaps = 16/137 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I+ +++  F  +  L   F       VG NG GK+ IL AI     G+     R  S  +
Sbjct: 61  IEKISVKNFMCHGRLDCNFGPNVNFVVGRNGSGKSAILTAIVVGLGGKAIATSRCNSVKN 120

Query: 64  VTRIGSPSFFS-TFARVEGMEG--------LADISIKLETRDDRSVRCLQINDVVIRV-- 112
             + G          R  G              +  ++      S R +     VI    
Sbjct: 121 FIKAGKKDAEVCIKLRNRGTNAYKPDMYGPSITVKRRILREGGNSYRIMSDKGEVISTNE 180

Query: 113 --VDELNKHLRISWLVP 127
             +  +  H  I    P
Sbjct: 181 DELSHIMDHFNIQIDNP 197


>gi|331266271|ref|YP_004325901.1| conserved hypothetical protein, P-loop NTPase,putative
          [Streptococcus oralis Uo5]
 gi|326682943|emb|CBZ00560.1| conserved hypothetical protein, P-loop NTPase,putative
          [Streptococcus oralis Uo5]
          Length = 238

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + I  + +  F+++     + F      FVG+N  GKT I +AI F+  G+
Sbjct: 1  MYISKIKLVNFKSFKGEHVIEFSEGVNFFVGNNNCGKTTIFKAIEFIQSGK 51


>gi|325567329|ref|ZP_08143996.1| cell division protein Smc [Enterococcus casseliflavus ATCC 12755]
 gi|325158762|gb|EGC70908.1| cell division protein Smc [Enterococcus casseliflavus ATCC 12755]
          Length = 1192

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 75/216 (34%), Gaps = 32/216 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A    + F+ + T  VG NG GK+NI EAI ++      +  R   
Sbjct: 1   MYLKRIEIAGFKSFADRTVIDFEHRVTAVVGPNGSGKSNITEAIRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   GS      +       ++  +    +    I +  R  R+      +N    R
Sbjct: 61  MPDVIFAGSDTRRALNIAEVTIVLDNSDHYLPMDYSEISVTRRLRRTGESDFFLNKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IFS    +RR   +             +   +
Sbjct: 121 LKDIQELFMDSGLGKESFSIISQGKVEAIFSSKPEDRRGIFEEA--------AGVLKYKQ 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSS---IEAQMAELGVK 196
           R  +   +L       S        +E Q+  L  +
Sbjct: 173 RKKKAEQKLFETEDNLSRLQDIIYELEDQLVPLAAQ 208


>gi|241713550|ref|XP_002412101.1| SMC protein, putative [Ixodes scapularis]
 gi|215505178|gb|EEC14672.1| SMC protein, putative [Ixodes scapularis]
          Length = 1182

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 25/223 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + I  F++Y   + +  FD       G NG GK+NIL++I F   ++     R +
Sbjct: 1   MHIKSITIDGFKSYGQRVDINGFDNLFNAITGLNGSGKSNILDSICFVLGITNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   + +I  +       +   IN 
Sbjct: 61  NLQDLVYKNGQAGVTKATVSITFDNRDTRQRPVGYEHFEEFTISRQVVVGGRNK-YMING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
           V        +    +   V +   +     +   + L+     ++  I+     RM + +
Sbjct: 120 VTATTNRVQDLFRSVQLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYESK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           + +  +     +    +   + +  ++     K+   R   + 
Sbjct: 178 KQVAQKTIEKKDAKI-AELNNVLAEEITPTIEKLKEERQAYLA 219


>gi|195455807|ref|XP_002074875.1| GK23290 [Drosophila willistoni]
 gi|194170960|gb|EDW85861.1| GK23290 [Drosophila willistoni]
          Length = 1180

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 18/124 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + +K L +  F++Y     +  FD + T   G NG GK+NIL+AI F   +S  +  R +
Sbjct: 1   MYVKKLILDGFKSYGKRTEIEGFDREFTAITGLNGSGKSNILDAICFVLGISNLQNVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +           +G E   DIS+  +   +   + L IN 
Sbjct: 61  ALQDLVYKNGQAGISKATVTIVFDNSNPAQCPQGYEKCRDISVARQVVVNGKNKFL-ING 119

Query: 108 VVIR 111
            +++
Sbjct: 120 KLVQ 123


>gi|168184658|ref|ZP_02619322.1| chromosome segregation protein SMC [Clostridium botulinum Bf]
 gi|182672317|gb|EDT84278.1| chromosome segregation protein SMC [Clostridium botulinum Bf]
          Length = 1193

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K + I  F+++A    LVF    T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1  MFLKSIEIRGFKSFADKTELVFKQGVTAIVGPNGSGKSNISDAVRWVLGEQSVKSLRGSK 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MEDVIFAGTQ 70


>gi|167516528|ref|XP_001742605.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779229|gb|EDQ92843.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1055

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF------LSPGRGFRRAS 60
           I  L++++F N+  L L F        G+NG GK+ IL +I         + GRG    S
Sbjct: 65  ITKLDLTDFMNHRRLTLDFGPNLNFICGENGSGKSAILTSIILGLGGNVGATGRG--STS 122

Query: 61  YADVTRIGSP 70
            +   R    
Sbjct: 123 ASAFIRRDKD 132


>gi|326404180|ref|YP_004284262.1| hypothetical protein ACMV_20330 [Acidiphilium multivorum AIU301]
 gi|325051042|dbj|BAJ81380.1| hypothetical protein ACMV_20330 [Acidiphilium multivorum AIU301]
          Length = 634

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 123/387 (31%), Gaps = 80/387 (20%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-RRASYADV 64
            +  + + +F+      +    + TI VG NG GK+++L+AI + +    +    +  ++
Sbjct: 72  ALDSITVRKFKATEEAVIPVS-RVTILVGPNGCGKSSVLQAIHWAARAASYVLPKNTKEM 130

Query: 65  TRIG------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
                     S     T  + E     +   +++          +    V IR       
Sbjct: 131 ISFERLDYVPSSEPLKTLYKGELKTDSSSTPVEVIFSHRPVGEDVIQTTVRIRAARNRGG 190

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH---RRRMIDFERLMRG----RNR 171
                 +   MD   +    ++R       F     +      + + E ++      R  
Sbjct: 191 ------ITAYMDGGAAVTPYKQR-------FQFITAYIPGLAGLSERETILAQPTLRRQA 237

Query: 172 LLTE--GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
              +  G   +   +    +M+E+      AR+  +N L + +         P + ++++
Sbjct: 238 ASGDAGGVLRNILLNLRSRRMSEVDDAGGRARLHQLNELINQVH--------PGVSINVS 289

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
                 +  S     EE++                               + I +   +T
Sbjct: 290 FDEREDYHISASIRTEEFS------------------------------GQEIPLEMAAT 319

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV----TDIGSQI 345
           G        + +              ++L+DE  AHL  DK+  L   +    +D  +Q+
Sbjct: 320 G-------VLQVVQIFAYLILF-EPKVMLIDEPDAHLHPDKQERLIEALERAASDYDTQV 371

Query: 346 FMTGTDKSVFDSLNETAKFMRISNHQA 372
            +      +  + + +AK + + + + 
Sbjct: 372 ILATHSPHIVRAASPSAKLVWMKDGRV 398


>gi|289678014|ref|ZP_06498904.1| hypothetical protein PsyrpsF_32310 [Pseudomonas syringae pv.
          syringae FF5]
          Length = 660

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61
          ++I+ + IS FR +    + +    + T  VG N  GKT +L+A+S      R  R  S 
Sbjct: 1  MRIESITISGFRCFGPNEISIPISDEVTTIVGPNAAGKTALLQAMSKLFGVTRAQRTVSL 60

Query: 62 AD 63
          +D
Sbjct: 61 SD 62


>gi|153938415|ref|YP_001391750.1| chromosome segregation protein SMC [Clostridium botulinum F str.
          Langeland]
 gi|152934311|gb|ABS39809.1| chromosome segregation protein SMC [Clostridium botulinum F str.
          Langeland]
          Length = 1193

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K + I  F+++A    LVF    T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1  MFLKSIEIRGFKSFADKTELVFKQGVTAIVGPNGSGKSNISDAVRWVLGEQSVKSLRGSK 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MEDVIFAGTQ 70


>gi|134101752|ref|YP_001107413.1| recombination and DNA repair protein [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133914375|emb|CAM04488.1| recombination and DNA repair protein [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 605

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 86/260 (33%), Gaps = 40/260 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        L      T+  G+ G GKT ++  +  L  GR     + A  
Sbjct: 4   MRIQGLGVID-----DATLELHPGLTVVTGETGAGKTMVVTGLHLLGGGR-----ADASR 53

Query: 65  TRIGSPSFFST-------------FARVEGMEGLADISIKLETR---DDRSVRCLQINDV 108
            R G+P                   AR  G E   D S+        D RS   L    V
Sbjct: 54  VRSGAPRAVVEGRFETTPESPAAKVARDAGAEPDEDGSLIAVRNVNADGRSRAHLGGRSV 113

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERLM 166
              V+ EL + +          R+  G        RF    V      ++R   ++   +
Sbjct: 114 PNAVLSELAEQVLAVHGQNDQLRLLRGGEQRAVLDRFAGDSVLRPLADYQRTRSEWAEAV 173

Query: 167 R------GRNR-LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
           R       R+R L  E        S I+A   E G         +++    L      +E
Sbjct: 174 REITERTQRSRELAREADLLRHGLSEIDAVAPEPGED-----TALVDEARRLADVDQLRE 228

Query: 220 NFPHIKLSLTGFLDGKFDQS 239
                +++L+G +DG  D  
Sbjct: 229 IATGAQIALSGAVDGDPDAP 248


>gi|127513307|ref|YP_001094504.1| chromosome segregation protein SMC [Shewanella loihica PV-4]
 gi|126638602|gb|ABO24245.1| chromosome segregation protein SMC [Shewanella loihica PV-4]
          Length = 1141

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/355 (16%), Positives = 113/355 (31%), Gaps = 51/355 (14%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++  +  + F+   T  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLTQIKLAGFKSFVDVTKIPFNQPLTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            ADV   GS             SF +   R+ G                       +N  
Sbjct: 61  MADVIFNGSSARRPVSVASVELSFDNQQGRLGGQYASYQAIAVKRQVSRDGESSYFLNGQ 120

Query: 109 VIRVVDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P            R+      E R F++        R++ R 
Sbjct: 121 KCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQELRVFIEEAAG--ISRYKERR 177

Query: 160 IDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR------------VEMIN 206
            +   R+   R  L   G         I+ ++AE        R            +E+  
Sbjct: 178 RETENRIRHTRENLERLGDIRQELGRQID-KLAEQAEAARQYRALKQTERDQHAQLEVAK 236

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
            L          +      L+ +    G+   S    + +      + ++   +    L 
Sbjct: 237 YLELSAQSDKLSQEIEAKTLTQSEGDAGREALSRNLTEIKLKLDELERQEQQQVEAFYLN 296

Query: 267 GPHRSDLIVDYCDKAITIAHG----STGEQKVVLV-----GIFLAHARLISNTTG 312
           G   + L  +   +    AH        E+K+ L+      + LA   L     G
Sbjct: 297 GNQIAKLEQEVKHRQQQDAHLKQRIKQDEEKLALLKAQEQALILARGDLDERQHG 351


>gi|86608585|ref|YP_477347.1| exonuclease SbcC [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557127|gb|ABD02084.1| exonuclease SbcC [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 1105

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 9  FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L +  F  YA   L     HT    G NG GK+ +L+A+++   G+  R ++ +D+ R 
Sbjct: 5  RLTLHNFLCYAHAVLDLRGIHTACICGPNGAGKSALLDALTWGLWGQS-RASNDSDLIRK 63

Query: 68 GSPSFFSTF 76
          G+   +   
Sbjct: 64 GASEAWVEV 72


>gi|312070433|ref|XP_003138144.1| SMC protein Flexible Hinge Domain containing protein [Loa loa]
 gi|307766691|gb|EFO25925.1| SMC protein Flexible Hinge Domain containing protein [Loa loa]
          Length = 1160

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYA 62
           + IK +NIS FR+Y    +  F  +H + VG NG GK+N   AI   LS      +A   
Sbjct: 1   MYIKEVNISGFRSYRETTVNDFSPRHNVVVGRNGSGKSNFFFAIQFVLSDEFSHLKAEQR 60

Query: 63  D-VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
             +   G+    +T +     +      + +E  + R +R +
Sbjct: 61  QGLIHEGTGDRVTTASVEIVFDNADHRIVAIEANEVRVLRRV 102



 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQI 345
            S G++ +V + +  A           AP  L DEI A LD   R A+  ++ ++   +Q 
Sbjct: 1059 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDAALDAQHRKAVADMIHELSENAQF 1113

Query: 346  FMTGTDKSVFDS 357
              T     + DS
Sbjct: 1114 ITTTFRPELLDS 1125


>gi|295110067|emb|CBL24020.1| hypothetical protein [Ruminococcus obeum A2-162]
          Length = 190

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 5  IKIKFL-NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGR 54
          + I  +  I+ +RN     + F+      +G+N +GKTNILE I+  L+ G+
Sbjct: 1  MYISEIVEINNYRNLTGKTITFNDTLNFLIGENNIGKTNILELINICLAIGK 52


>gi|220908912|ref|YP_002484223.1| exonuclease SbcC [Cyanothece sp. PCC 7425]
 gi|219865523|gb|ACL45862.1| exonuclease SbcC [Cyanothece sp. PCC 7425]
          Length = 1003

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 9  FLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L +  F +Y    L F         G NG GK+++LEAI++   G   R  S  D+  +
Sbjct: 5  RLTLKNFLSYREATLDFSGLHVACICGANGAGKSSLLEAIAWAIWGES-RAGSEDDLIHL 63

Query: 68 GSPSFFSTF 76
          G+      F
Sbjct: 64 GTKEAQVDF 72


>gi|90579612|ref|ZP_01235421.1| hypothetical protein VAS14_01581 [Vibrio angustum S14]
 gi|90439186|gb|EAS64368.1| hypothetical protein VAS14_01581 [Vibrio angustum S14]
          Length = 579

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI  L+++ FR++     + F    T+  G N VGK+ +L A+ +L
Sbjct: 1  MKITKLSLTNFRSFKQTQTIEFAP-VTLLFGPNSVGKSTVLMALFYL 46


>gi|45201332|ref|NP_986902.1| AGR236Wp [Ashbya gossypii ATCC 10895]
 gi|44986186|gb|AAS54726.1| AGR236Wp [Ashbya gossypii ATCC 10895]
          Length = 1170

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +K++ L I  F++YA+  +   +D Q     G NG GK+NIL++I F+         R  
Sbjct: 1   MKVEELIIDGFKSYATRTVISGWDPQFNAITGLNGSGKSNILDSICFVLGISSMATVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E    IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVIKASVTIVFDNSDPSSSPFGFETYPKISVTRQIILGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              + +  L+    +   + + + +    
Sbjct: 120 HRAQQLTVLHLFQSVQLNINNPNFLIMQG 148


>gi|22299718|ref|NP_682965.1| hypothetical protein tlr2175 [Thermosynechococcus elongatus BP-1]
 gi|22295902|dbj|BAC09727.1| tlr2175 [Thermosynechococcus elongatus BP-1]
          Length = 1003

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 116/360 (32%), Gaps = 44/360 (12%)

Query: 8   KFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           + L +  F +Y    L F         G NG GK+++LEAI++   G+  R +   DV  
Sbjct: 4   RQLVLRNFLSYRQATLPFAGLHLACICGANGAGKSSLLEAIAWALWGQS-RASREDDVIY 62

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            G      TF            R+   E    + ++++T    +    +        + +
Sbjct: 63  YGEMEAQVTFEFSVQGQTYRVVRLRRREQHTVLELQIQTAVGYTSLTGRSLRATQEKIIQ 122

Query: 116 LNKHLRISWLVPSM------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
           +      +++  +       D   +  + ER++ L  ++          +  +E L    
Sbjct: 123 ILGLDYATFVNSAYLRQGRADEFMAKRASERKQLLATLLG---------LDQYETLAE-- 171

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIA---RVEMIN-ALSSLIMEYVQKENFPHIK 225
                      +  S +E ++  L  ++      R +    +          ++    ++
Sbjct: 172 -AARDRARDYKAQISVLEQRLQTLANQLAQEPHLRTQQAAVSQQIQQQRQQVQQCQQRLQ 230

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
                +   +  Q      ++    L          R+TL    ++ +        +  A
Sbjct: 231 AQQAAYQIHQLQQRDYEHLQQQRDTLAATIAHLEHQRQTLR-QEQAAIADLEARAPLLAA 289

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH-LDEDKRNALFRIVTDIGSQ 344
             S  +       +  A A+L      +  +    +     LD+ +++ L R +  + SQ
Sbjct: 290 AVSQWQ------SLKTAEAQLQQCFANYQQLRQERDRHQQSLDQQRQD-LLRTLHGLESQ 342


>gi|312136567|ref|YP_004003904.1| smc domain protein [Methanothermus fervidus DSM 2088]
 gi|311224286|gb|ADP77142.1| SMC domain protein [Methanothermus fervidus DSM 2088]
          Length = 865

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 28/49 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K+K L +   R+Y   +L F+   T+F GD G GK+ IL AI F   G
Sbjct: 1  MKLKSLELKNIRSYKYEKLEFNDGVTLFEGDIGSGKSTILLAIEFALFG 49


>gi|331240670|ref|XP_003332985.1| hypothetical protein PGTG_14771 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309311975|gb|EFP88566.1| hypothetical protein PGTG_14771 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 1207

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 10/109 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RRAS 60
           I  + +  F  Y+S+         + +G NG GK+ ++ AI     G GF      R + 
Sbjct: 133 IVRVALRNFVTYSSVEFSPGPYLNMIIGPNGTGKSTLVCAIVL---GLGFAPSVLDRASE 189

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
                + G+    S    ++G  G  + +IKL      + R  ++N   
Sbjct: 190 VKLFIKSGTEEG-SVEIELKGHPGKKNYTIKLNLILANNSRVFEVNGKR 237


>gi|327469002|gb|EGF14474.1| DNA repair protein RecN [Streptococcus sanguinis SK330]
          Length = 552

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 75/226 (33%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA----IDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD    A    +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGSADFLNLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LILQKNQQEHKARVEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|326577833|gb|EGE27701.1| condensin subunit Smc [Moraxella catarrhalis O35E]
          Length = 589

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 58/300 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K L ++ F+++A+     F    T  VG NG GK+N+++AI ++   +  +  R  +
Sbjct: 1   MRLKSLKLAGFKSFANPTTFTFRHDITAIVGPNGCGKSNVIDAIRWVLGETSAKQLRGGA 60

Query: 61  YADVTRIG-SPSFFSTFARVE-----GMEGLADISIKLETRDDRSVRC---------LQI 105
            +DV   G       + A VE       +    I  +L    + S+R            I
Sbjct: 61  MSDVIFAGVEGRAAKSLASVELIFEHTQDETHGIRHELNLYQELSLRRQVTKEGKSDYFI 120

Query: 106 NDVVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-- 155
           N   +R  D         L            + RI     M+ R F++        R+  
Sbjct: 121 NGQRVRRRDVVDVFLGTGLGARSYAVIEQGMIGRIVESSPMQLREFIEEGAG--VSRYQA 178

Query: 156 ---------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                           +R+ D +  ++ +++ L      +    ++  ++  L       
Sbjct: 179 RRAETEKKLGETQDNLKRLSDLQGELKKQHKTLIRQAQSAKQYQALNDELKTL------Q 232

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           + E+I  L      + QK     I+   +G +  K D     ++ E    L   R  ++ 
Sbjct: 233 KEELIRRLFEAWHHHEQK----KIEQGKSGEVLAKLDAKANQVRREL--DLLSARVAEAQ 286


>gi|227513460|ref|ZP_03943509.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus buchneri ATCC 11577]
 gi|227083333|gb|EEI18645.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus buchneri ATCC 11577]
          Length = 1183

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +++K + I  F+++A   ++ F    T  VG NG GK+NI EAI   L     +  R + 
Sbjct: 1   MQLKSIEIIGFKSFAEKTKISFPNGMTGIVGPNGSGKSNIAEAIRWVLGEQSAKNLRGSR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS    S   A V  +   +D  +     + +  R L  N 
Sbjct: 61  MPDVIFSGSADRRSLNMAAVTLLLDNSDHYLDSPYSEIKVSRKLFRNG 108


>gi|224139208|ref|XP_002326795.1| condensin complex components subunit [Populus trichocarpa]
 gi|222834117|gb|EEE72594.1| condensin complex components subunit [Populus trichocarpa]
          Length = 1176

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 98/281 (34%), Gaps = 34/281 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + +K + +  F++YA+  +V  FD       G NG GK+NIL++I F   ++  +  R +
Sbjct: 1   MYVKEICLEGFKSYATRTVVQGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          +            G E  ++I++  +       + L IN 
Sbjct: 61  NLQELVYKQGQAGITKATVSIVFDNSDRSRSPLGYENHSEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
            + +     N    +   V +   +     +   + L+     ++  ++     RM + +
Sbjct: 120 KLAQPSQVQNLFHSVQLNVNNPHFLIMQGRIT--KVLNMKPPEILSMLEEAAGTRMYETK 177

Query: 164 R--LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           +   ++    L  +          ++ ++     K+   R++ +           + +  
Sbjct: 178 KESALK---TLEKKQSKVVEINKLLDQEILPALEKLRKERMQYMQ----WANGNAELDRL 230

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMS 261
               ++       K   S     E+   K+ +     D M 
Sbjct: 231 KRFCVAYDYVQAEKIRDSAVGEVEQMKAKIAEIDHNADRMR 271


>gi|13508165|ref|NP_110114.1| SMC family chromosome/DNA binding/protecting protein [Mycoplasma
           pneumoniae M129]
 gi|2500795|sp|P75361|P115_MYCPN RecName: Full=Protein P115 homolog
 gi|1674099|gb|AAB96063.1| SMC family, chromosome/DNA binding/protecting functions [Mycoplasma
           pneumoniae M129]
          Length = 982

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 24/163 (14%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62
           +K      F++YA  + + F    T  VG NG GK+N+++A+ ++   R     R  S  
Sbjct: 4   LKRFRAYGFKSYADEITINFTHSMTGIVGPNGSGKSNVVDALKWVLGERSMKHLRSKSGD 63

Query: 63  DVTRIGSPS-FFSTFARVE---------GMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           D+   GS     S  A VE           +   +IS+              IN  ++  
Sbjct: 64  DMIFFGSKDKPASKLAEVELTFDNSQKLLHDPRPEISVMRRIYRGSGQSEYYINGELV-T 122

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR 146
           + E++       L      I S             ERR+  + 
Sbjct: 123 LKEISGIFADIGLEKGSLGIISQGSVSWFVEAKPEERRKIFED 165


>gi|326912474|ref|XP_003202575.1| PREDICTED: structural maintenance of chromosomes protein 1B-like
           [Meleagris gallopavo]
          Length = 1234

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 115/316 (36%), Gaps = 45/316 (14%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63
           +K L + +F+++     +    +    +G NG GK+NI++A+SF+   +    R  S  +
Sbjct: 4   LKLLMVKDFKSWRGEQLIGPFMRFNCIIGPNGSGKSNIMDAVSFVLCEKIANLRVKSVRE 63

Query: 64  VTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHL 120
           +   G+      S+ A V+ +    D   K  +R  R      I ND  I     +++  
Sbjct: 64  LI-HGAHVGKPVSSTASVKIVYCEEDGEEKTFSRVIRDGCSEYIFNDKSITRSAYISELE 122

Query: 121 RISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
           +I   V + + +               ER +  +++  +   ++       +R M     
Sbjct: 123 KIGIHVKARNCLIFQGTVESIAMKKPKERTQLFEQI--SNSCQYAEEYEKKKRKMLQAEE 180

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                Y      ++   Q A++  +       ++  L++              ++ L  F
Sbjct: 181 DAHFNYNKKKNIAAERKQ-AKIEKEEAEHYQMLVRELNAN-------------RIQLQLF 226

Query: 232 LDGKFDQSFCALKEEYAKKLFDGR-KMD---------SMSRRTLIGPHRSDLIVDYCDKA 281
                ++S  +LKE   +K  + R K D            ++ L   +R      + ++ 
Sbjct: 227 QLYYNERSIESLKESLDEKNMEARIKKDSLLTAEDAFRAKKKVLGVLNRDQ---QHIERE 283

Query: 282 ITIAHGSTGEQKVVLV 297
           +     S  +QK + +
Sbjct: 284 MKTLQASLIQQKALYI 299


>gi|229149250|ref|ZP_04277489.1| hypothetical protein bcere0011_8140 [Bacillus cereus m1550]
 gi|228634222|gb|EEK90812.1| hypothetical protein bcere0011_8140 [Bacillus cereus m1550]
          Length = 702

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 5  IKIKFLNISEFRNY-------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +K ++++ FR +        ++ + F+    I VG+N  GKT I++AI +L
Sbjct: 1  MYMKSISLTNFRQFGTVNKGEPAITVEFNPNFNILVGENDSGKTAIIDAIRYL 53


>gi|163744745|ref|ZP_02152105.1| chromosome segregation protein, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161381563|gb|EDQ05972.1| chromosome segregation protein, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 1151

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/288 (18%), Positives = 100/288 (34%), Gaps = 42/288 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFSKLRLTGFKSFVDPTDLVISDGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+ S     F      ++  + LA         +++  R  R V    ++N  
Sbjct: 61  MEDVIFAGAASRPARNFAEVSLHLDNSDRLAPAGFNEQDALEIVRRITRDVGSAYKVNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQIAELINAKPKSRRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK-INIARVEMINALSSLIMEYVQKE 219
             E  ++           D      + +Q+A L  +  + AR   I             E
Sbjct: 177 RHEAELKLNGAEQNLARVDDV-IEQLASQLATLARQARHAARYREI------------GE 223

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
              H +  L      + D++    ++E   ++    + ++  RR   G
Sbjct: 224 ALRHAEGLLLYRRWREADEARGKAEDELRARVTSAAEAEAQVRRMAKG 271


>gi|108757313|ref|YP_633058.1| chromosome segregation protein SMC [Myxococcus xanthus DK 1622]
 gi|108461193|gb|ABF86378.1| chromosome segregation protein SMC [Myxococcus xanthus DK 1622]
          Length = 1200

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          ++IK L+I+ F+++       FD   T  VG NG GK+N+++AI ++      +  R   
Sbjct: 1  MRIKRLDITGFKSFMERSVFTFDEGVTGIVGPNGCGKSNVVDAIRWVMGEQSAKNLRGRG 60

Query: 61 YADVTRIGSPS 71
            DV   GS +
Sbjct: 61 MEDVIFNGSEN 71


>gi|303240730|ref|ZP_07327244.1| AAA ATPase [Acetivibrio cellulolyticus CD2]
 gi|302591798|gb|EFL61532.1| AAA ATPase [Acetivibrio cellulolyticus CD2]
          Length = 338

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          + +K L +S F  ++ L + F     IFVG+NG GKT+I++ + 
Sbjct: 1  MSLKKLKLSNFTVFSKLDMEFSKGINIFVGENGTGKTHIMKTLY 44


>gi|227524603|ref|ZP_03954652.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus hilgardii ATCC 8290]
 gi|227088278|gb|EEI23590.1| SMC structural maintenance of chromosomes partitioning protein
           [Lactobacillus hilgardii ATCC 8290]
          Length = 1183

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +++K + I  F+++A   ++ F    T  VG NG GK+NI EAI   L     +  R + 
Sbjct: 1   MQLKSIEIIGFKSFAEKTKISFPNGMTGIVGPNGSGKSNIAEAIRWVLGEQSAKNLRGSR 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS    S   A V  +   +D  +     + +  R L  N 
Sbjct: 61  MPDVIFSGSADRRSLNMAAVTLLLDNSDHYLDSPYSEIKVSRKLFRNG 108


>gi|254489937|ref|ZP_05103132.1| hypothetical protein MDMS009_268 [Methylophaga thiooxidans DMS010]
 gi|224465022|gb|EEF81276.1| hypothetical protein MDMS009_268 [Methylophaga thiooxydans DMS010]
          Length = 595

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 64/409 (15%), Positives = 125/409 (30%), Gaps = 60/409 (14%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K+K L +  FR Y     + F    T  +G N VGKT+IL+A+     G    +    D
Sbjct: 1   MKLKKLKVQNFRAYQTETEISFS-NMTGLIGRNDVGKTSILDALGIF-FGHKLCKYEAGD 58

Query: 64  -VTRIGSPSFFSTFARVEGMEGLA--------------------DISIKLETRDDRSVRC 102
                G           E +                         +S+    +  +    
Sbjct: 59  KCVYAGENEDVIITCEFEELPQEIVLDATSVTSLDREYLLTDGGTLSLSKVFKKGKGSGA 118

Query: 103 LQIN----------DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM--VFA 150
              N           ++++  DEL    +   +    +R        R    D +  +  
Sbjct: 119 YMANCVHPSARNAKGILLKKNDELKSIAQSLGIAAEDNR---SNVSLREAIYDAVGDLKL 175

Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
            +        D + ++      L       +   S + + AE+   + +A  + I  +S 
Sbjct: 176 KEQSVALSKEDGKAILEQIQNHLPHFALFRADRPSTDEE-AEVQDPMKVAISQAIEDISP 234

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
            + +   +     + ++ +             L  E A  L    K D            
Sbjct: 235 QLEDIKDQVKQRALTVANSTLSH------LADLDPELAMSLTPDFKADPKWEGIF----- 283

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDED 329
             L +   D       GS G +++VL+  F A A  I         I  ++E       D
Sbjct: 284 -KLSLAGDDDIPINKRGS-GVRRLVLISFFKAEAERIKREYQDRGVIYAIEEPENSQHPD 341

Query: 330 KRNALFRIVTDI----GSQIFMTGTDKSVFDSLNETA--KFMRISNHQA 372
           K+  L    +++    G QI +T    ++ + L   +     +  + + 
Sbjct: 342 KQKLLVEAFSEMADKDGCQIVITTHVPALAEQLPIKSIRHIFKNQDGEI 390


>gi|195150411|ref|XP_002016148.1| GL10652 [Drosophila persimilis]
 gi|194109995|gb|EDW32038.1| GL10652 [Drosophila persimilis]
          Length = 1181

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 18/124 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + +K L +  F++Y     +  FD + T   G NG GK+NIL++I F   +S  +  R +
Sbjct: 1   MYVKKLVLDGFKSYGRRTEIDGFDPEFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +IS+  +       +   IN 
Sbjct: 61  ALQDLVYKNGQAGITKATVTIVFDNTNALQCPTGYEKCREISVARQVVVGGKNK-FMING 119

Query: 108 VVIR 111
            +++
Sbjct: 120 KIVQ 123


>gi|195036424|ref|XP_001989670.1| GH18920 [Drosophila grimshawi]
 gi|193893866|gb|EDV92732.1| GH18920 [Drosophila grimshawi]
          Length = 1103

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           K+  + +  F  +++L + F       VG NG GK+ ++ A++ L      R  S A   
Sbjct: 79  KLMSIRLKNFMCHSNLFIEFGPNINFLVGSNGSGKSAVITALA-LGLAGSARNTSRASSI 137

Query: 66  R 66
           R
Sbjct: 138 R 138


>gi|85858660|ref|YP_460862.1| ATP-dependent endonuclease family protein [Syntrophus
          aciditrophicus SB]
 gi|85721751|gb|ABC76694.1| ATP-dependent endonuclease family protein [Syntrophus
          aciditrophicus SB]
          Length = 636

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++I  L I  FR   +  ++   +H++ +GDN  GKT ILEAI  
Sbjct: 1  MQISRLIIKNFRGIQNASIILS-KHSVLIGDNNTGKTTILEAIDL 44


>gi|319646024|ref|ZP_08000254.1| smc protein [Bacillus sp. BT1B_CT2]
 gi|317391774|gb|EFV72571.1| smc protein [Bacillus sp. BT1B_CT2]
          Length = 1186

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K L++  F+++   + + F    T  VG NG GK+NI +AI ++      +  R   
Sbjct: 1  MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSAKSLRGGK 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFAGSDS 71


>gi|254420613|ref|ZP_05034337.1| chromosome segregation protein SMC [Brevundimonas sp. BAL3]
 gi|196186790|gb|EDX81766.1| chromosome segregation protein SMC [Brevundimonas sp. BAL3]
          Length = 1145

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           ++ + L +  F+++     +  ++  T  VG NG GK+N+LE++ ++         R   
Sbjct: 1   MQFQRLRLVGFKSFVDPAEVHIESGLTGVVGPNGCGKSNVLESLRWVMGANSAKAMRGQG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G+      S       ++  +  A         +++  R DR      +IN  
Sbjct: 61  MDDVIFAGAAGRPPRSHAEVSLTIDNAQRRAPQPFTDSPVLEVSRRIDRGQGSTYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + +     RRR L+
Sbjct: 121 EVRARDVQLLFADASTGANSPALVRQGQISELIAAKPQNRRRILE 165


>gi|195108475|ref|XP_001998818.1| GI23422 [Drosophila mojavensis]
 gi|193915412|gb|EDW14279.1| GI23422 [Drosophila mojavensis]
          Length = 1104

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 16/167 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-- 63
           KI  + +  F  ++ L + F       VG NG GK+ ++ A++ L      R  S A   
Sbjct: 80  KIISIRLKNFMCHSHLYIEFGPNINFLVGSNGSGKSAVIAALA-LGLAGSARNTSRASSI 138

Query: 64  --VTRIGSPSFFSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQI--NDVVIR 111
             + + G  +  S    +  +             I++  + R   S   ++   +  V R
Sbjct: 139 QKLIKNGETNA-SIELTLSNVGHRPFKPDIYGPHITVVRQIRQSSSTYEIKDSHHRTVSR 197

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
            +DE+ + +    +              R    D    +      + 
Sbjct: 198 KLDEIRRMILYFGISVENPIFVLNQEASREFLKDLEPASNYKLFMKA 244


>gi|218245499|ref|YP_002370870.1| SMC domain-containing protein [Cyanothece sp. PCC 8801]
 gi|218165977|gb|ACK64714.1| SMC domain protein [Cyanothece sp. PCC 8801]
          Length = 439

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 63/366 (17%), Positives = 123/366 (33%), Gaps = 39/366 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE--AISFLSPGRGFRRASYA 62
           +KI  L +  FR +         Q T+F+GDN  GKT +L+  AI   S   GF     +
Sbjct: 1   MKIDQLEVENFRGFKKEVFKLSEQFTVFIGDNCTGKTAVLDALAIGIGSLFLGF-TNVDS 59

Query: 63  DVTRIGSPSFFS-TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
              +       S        +E    + I      D +   L  N + I    EL K   
Sbjct: 60  RHIKDDEVHRISYIKGETYTLEAQYPVRISCRWFLDNNYTDLLSNILFISWSRELTKKGG 119

Query: 122 ISWLVPSMDRI-FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN-RLLTEGYFD 179
            +    + D I FS    ++    + ++  +   +    +  ++  + +    L  G   
Sbjct: 120 RTTRTDATDLINFSKKLQQKVDQGEDIILPVIAYYGTARLWVQK--KQKAVETLKPGSRM 177

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP---HIKLSLTGFLDGKF 236
             +   ++   +    K+ +   + +      I E  +KE       +K ++   +D   
Sbjct: 178 RGYIDCLD---SASNEKLMLRWFKTME-----IAEIQRKEPIKVLRAVKEAVANCVDYWN 229

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
             S+  L+++      +G  +             SD + +       IA+      +  +
Sbjct: 230 TVSYDILQDDLIITSKNGESLPFRM--------LSDGVRNMLAMVADIAY------RSAV 275

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSV 354
           +   L     I        I+L+DEI  HL    +  +   + +     Q   T     +
Sbjct: 276 LNPHLEERAAIE----TPGIVLIDEIDLHLHPKWQRKVVNDLRNTFPKIQFIATTHSPFI 331

Query: 355 FDSLNE 360
             SL +
Sbjct: 332 IQSLKD 337


>gi|70605904|ref|YP_254774.1| DNA double-strand break repair rad50 ATPase [Sulfolobus
          acidocaldarius DSM 639]
 gi|18202023|sp|O33600|RAD50_SULAC RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|2293014|emb|CAA71688.1| purine NTPase [Sulfolobus acidocaldarius]
 gi|21388537|emb|CAD26845.1| Rad50 protein [Sulfolobus acidocaldarius]
 gi|68566552|gb|AAY79481.1| DNA double-strand break repair rad50 ATPase [Sulfolobus
          acidocaldarius DSM 639]
          Length = 886

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 2/94 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYAD 63
          + I+ + +  F ++    + F+    + +G+NG GK++I++ I F    R  R      +
Sbjct: 1  MIIREIRLQNFLSHEDTTVKFEGSINVIIGNNGAGKSSIIDGILFGLFKRTNRDIGKNEE 60

Query: 64 VTRIGSPSF-FSTFARVEGMEGLADISIKLETRD 96
          + + G  S   S    + G   L D ++   +RD
Sbjct: 61 LIKKGKKSGQVSIKFEINGDTYLIDRNVGETSRD 94



 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---DIGSQ 344
           S GE+  + + + LA A+ +         L+LDE + +LDE +R  L  ++    +I  Q
Sbjct: 794 SGGERISIALALRLAIAKALM---NQFSTLILDEPTVNLDEYRRKELIDVIRSAIEIVPQ 850

Query: 345 IFMTGTDKSVFDS 357
           I +   D+ +  +
Sbjct: 851 IILVTHDQELIQA 863


>gi|85691109|ref|XP_965954.1| chromosome segregation protein [Encephalitozoon cuniculi GB-M1]
 gi|19068521|emb|CAD24989.1| CHROMOSOME SEGREGATION PROTEIN [Encephalitozoon cuniculi GB-M1]
          Length = 1002

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 13/116 (11%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + I+ + +  F+ Y    +    D       G NG GK+N+L+ I F   L   +  R  
Sbjct: 1   MFIREIVLDGFKCYEEKVVVANLDRSFNAITGMNGSGKSNVLDGILFALGLESTKALRAN 60

Query: 60  SYADVTRIGSPSFFSTFARVE--------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++          +             G E   +I +      +   +C   N 
Sbjct: 61  NTRELINAHRKECRVSVVMCNREKARSPPGYEHHDEICVSRTIDLEGRTKCYINNH 116


>gi|227554518|ref|ZP_03984565.1| SMC structural maintenance of chromosomes partitioning protein
           [Enterococcus faecalis HH22]
 gi|227176316|gb|EEI57288.1| SMC structural maintenance of chromosomes partitioning protein
           [Enterococcus faecalis HH22]
          Length = 977

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 77/213 (36%), Gaps = 26/213 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I+ F+++A   +  F+   T  VG NG GK+NI EA+ ++      +  R   
Sbjct: 1   MYLKRIEITGFKSFADKTIIEFEDDVTAVVGPNGSGKSNITEAVRWVLGEQSAKNLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS      +       ++  +    +    I +  R  R+      IN    R
Sbjct: 61  MNDIIFAGSEGRKPLNIAEVTVTLDNSDHYLALDYSEISVTRRLKRTGESDFFINKQACR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L K          ++ IF+    +RR   +     +   +++R    E
Sbjct: 121 LKDIQDLFMDSGLGKESFSIISQGKVEAIFNSKPEDRRGIFEEAAGVLK--YKQRKKKAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +      L+           +E Q+  L  +
Sbjct: 179 QKLFETEDNLSRVQ---DIIYELEDQLVPLAAQ 208



 Score = 39.9 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 1/111 (0%)

Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199
           +R  LD  +     +  +     ++    +N L+      S   S  E  +AE   KI  
Sbjct: 275 KRNRLDEQIETEQQQLLQVTEALKQAEGQKNVLIERSKHTSQTASEYEETLAETAEKIVR 334

Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            R E +  L + I E   +       L+L      K+ +S   L EE   +
Sbjct: 335 YREE-LQTLETAIAEKTAQRQTLKEALALATKDVEKYSKSSKELMEELRSQ 384


>gi|225870876|ref|YP_002746823.1| chromosome partition protein [Streptococcus equi subsp. equi 4047]
 gi|225700280|emb|CAW94533.1| putative chromosome partition protein [Streptococcus equi subsp.
           equi 4047]
          Length = 1183

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 97/280 (34%), Gaps = 30/280 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   +++FD   T  VG NG GK+N+ E++ +    +  +  R   
Sbjct: 1   MFLKEIQMQGFKSFADKTKIIFDKGVTAVVGPNGSGKSNVTESLRWALGEASAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGME---GLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++      ++  +     A   I++E    R+      I+   +R
Sbjct: 61  MPDVIFAGTEHRSPLNYAEVAVVLDNSDAFIKNAQKEIRVERHIYRNGDSDYLIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +             ++ ++
Sbjct: 121 LRDIHELFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
              +     L +   +      I  ++      +          L+        + +   
Sbjct: 172 TRKKETQTKLNQTQDNLDRLDDIIYELEHQAGPLERQAKTARQFLALDADRKQLQLDILV 231

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
             +          +++  AL+E+ A      + +++ + R
Sbjct: 232 KDIEQDRMEQEAQEKALVALREDLAAYHRKRQSLEAENHR 271


>gi|170756367|ref|YP_001781995.1| chromosome segregation protein SMC [Clostridium botulinum B1 str.
          Okra]
 gi|169121579|gb|ACA45415.1| chromosome segregation protein SMC [Clostridium botulinum B1 str.
          Okra]
          Length = 1193

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K + I  F+++A    LVF    T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1  MFLKSIEIRGFKSFADKTELVFKQGVTAIVGPNGSGKSNISDAVRWVLGEQSVKSLRGSK 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MEDVIFAGTQ 70


>gi|317033210|ref|XP_001395076.2| DNA repair protein Rad18 [Aspergillus niger CBS 513.88]
          Length = 1136

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 101/339 (29%), Gaps = 45/339 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +    +         VG NG GK+ +L AI+    G+     R  S   
Sbjct: 97  LERVECYNFMCHDHFYVDLGPLINFIVGKNGSGKSAVLTAITLCLGGKASTTNRGQSLKS 156

Query: 64  VTRIGSPSFFSTFARVEGMEGL---------ADISIKLETRDDRSVRCLQIND----VVI 110
             + G              +G            I            +    N        
Sbjct: 157 FIKEGKEHATIVVRIKNQGDGAYMPDDYGKFITIERHFSRNGTSGFKIRAENGRIMSTKK 216

Query: 111 RVVDELNKHLRISWLVP------SMDRIFSG--LSMERRRFL--DRMVFAIDPRH----- 155
             +D +  +  + +  P       M R F G     E+ +F      +  +D  +     
Sbjct: 217 SELDAIIDYFTLQFDNPMNVLSQDMARQFIGSSSPSEKYKFFVKGVQLEQLDQDYRLIEE 276

Query: 156 --------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
                    R       +++ R          S+   S+  ++  +  ++  A+VE    
Sbjct: 277 SGDQIEEKLRGREQDIAILQSRKETAKRKLDISNQHDSLRNRIRNVRNQMAWAQVEEQER 336

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           +   + E   +      +++        FD +  A   E        R+ ++   +    
Sbjct: 337 IRDTLDE---EILAADNQIAADEADLSNFDVTISAAAAELEAAAESVRQANAKRGQVQE- 392

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
             + ++ V + D  +T  HG   EQ+ +   +  A  R+
Sbjct: 393 -EKDEIQVRW-DAQMTERHGLQAEQRRIREYLKAAEGRI 429


>gi|301633364|gb|ADK86918.1| chromosome segregation protein SMC [Mycoplasma pneumoniae FH]
          Length = 982

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 24/163 (14%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62
           +K      F++YA  + + F    T  VG NG GK+N+++A+ ++   R     R  S  
Sbjct: 4   LKRFRAYGFKSYADEITINFTHSMTGIVGPNGSGKSNVVDALKWVLGERSMKHLRSKSGD 63

Query: 63  DVTRIGSPS-FFSTFARVE---------GMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           D+   GS     S  A VE           +   +IS+              IN  ++  
Sbjct: 64  DMIFFGSKDKPASKLAEVELTFDNSQKLLHDPRPEISVMRRIYRGSGQSEYYINGELV-T 122

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR 146
           + E++       L      I S             ERR+  + 
Sbjct: 123 LKEISGIFADIGLEKGSLGIISQGSVSWFVEAKPEERRKIFED 165


>gi|294625460|ref|ZP_06704090.1| recombination protein N [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294666513|ref|ZP_06731755.1| recombination protein N [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292600227|gb|EFF44334.1| recombination protein N [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292603744|gb|EFF47153.1| recombination protein N [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 554

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/274 (19%), Positives = 92/274 (33%), Gaps = 30/274 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSPSF-----FSTFAR--------VEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+        F   A            ++  A   ++   R D   R   IN   +   
Sbjct: 57  HGAERAELSAEFQLPAEHPGLGWLADNELDDEAQCQLRRIIRADGGSRA-WINGRPVTSS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168
            + EL   L           + +  S      LD   R     +   R+    ++ L+  
Sbjct: 116 QLAELASKLVEIHGQHEHQALMARHSQL--ALLDAYARNSAQREQV-RQASQRWQALLDE 172

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
           R+ L  +G   S     +E Q+AEL  +        I AL                  S+
Sbjct: 173 RDALSAQGDV-SDRIGFLEHQLAEL--EREDLDPAAIAALDVNHRRQAHATALIGACDSV 229

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
              L+G    S   L ++    L    + +    
Sbjct: 230 AQQLNGDDGASALGLLQDSRHDLSRVAEHEPRLG 263


>gi|21242270|ref|NP_641852.1| recombination protein N [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107696|gb|AAM36388.1| recombination protein N [Xanthomonas axonopodis pv. citri str. 306]
          Length = 554

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 92/273 (33%), Gaps = 28/273 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLADISIKLETR-------DDRSVRCLQINDVVI--RV 112
            G+        F   A   G+  LAD  +  E +                IN   +    
Sbjct: 57  HGAERAELSAEFQLPAEHPGLRWLADNELDDEAQCQLRRIIRADGGSRAWINGRPVTSSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRGR 169
           + EL   L           + +  S      LD   R     +   R+    ++ L+  R
Sbjct: 117 LAELASKLVEIHGQHEHQALMARHSQL--ALLDAYARNSAQREQV-RQASQRWQALLDER 173

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
           + L  +G   S     +E Q+AEL  +        I AL                  S+ 
Sbjct: 174 DALSAQGDV-SDRIGFLEHQLAEL--EREDLDPAAIAALDVNHRRQAHATALIGACDSVA 230

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
             L+G    S   L ++    L    + +    
Sbjct: 231 QQLNGDDGASALGLLQDSRHDLSRVAEHEPRLG 263


>gi|190344395|gb|EDK36063.2| hypothetical protein PGUG_00161 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1082

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 4/112 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ L +  F  +    L F  Q    +G NG GK+ IL  IS     +     R  S   
Sbjct: 63  IEKLVLRNFMCHEFFELEFGPQLNFIIGRNGSGKSAILTGISVGLGAKAADTNRGTSMKK 122

Query: 64  VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           + + G  +   S   + EG E     +       +R ++    N  +I+   
Sbjct: 123 LIKDGKNTARISITLKNEGPEAYKRSTFGSHIIIERVLQRQGTNQYLIKSAS 174


>gi|148507995|gb|ABQ75795.1| chromosome segregation protein [uncultured haloarchaeon]
          Length = 1089

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/293 (17%), Positives = 105/293 (35%), Gaps = 40/293 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS---FLSPGR-----GF 56
           + IK L +   R+Y    + F     +  GDNG GKT+++  +    FLS  R      F
Sbjct: 1   MNIKKLELQNIRSYEQQSIQFPEGTILIHGDNGAGKTSLVMGLFGGLFLSEIRNVGNNSF 60

Query: 57  RRASYADVTRIGSPSF-FSTFARVEGMEGLADISI-KLETRDDRSVRCLQINDVVIRVVD 114
              S  +  R G           V G+E   +  +    T +D ++R  + +  V  + D
Sbjct: 61  ---SLDEFVRRGGNKGTVELVFEVSGVEYEVEWELYTTSTPNDATLRSPEFDSPVSGITD 117

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP-RHRRRMIDFERL-------- 165
              +   I  +       F+     ++  +DR++ A D       ++  ++L        
Sbjct: 118 VKKQIQDILGMDEED---FANSVYVKQGEVDRLIEASDRAEMIDGLLGLDKLDENIETMK 174

Query: 166 --------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM------INALSSL 211
                   ++ RN    +GY D       +   AE   +I     ++      I+ +   
Sbjct: 175 MARRGAGRVQMRNEDQADGYRD-DLQEDFDRDEAEFNAEITEIDNKIANVEADIDEVEQY 233

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
           I E    +     ++     +  + +     + ++  K+  + +K+D+   R 
Sbjct: 234 INELKNAQARLENRIKNYEEIINQKESVETQINQKRTKRADEQQKIDACENRI 286


>gi|74007448|ref|XP_538049.2| PREDICTED: similar to Structural maintenance of chromosome 1-like 1
           protein (SMC1alpha protein) (SB1.8/DXS423E protein)
           (Sb1.8) [Canis familiaris]
          Length = 1295

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 66  LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 125

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 126 LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 184

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 185 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 218


>gi|315303035|ref|ZP_07873745.1| DNA repair protein RecN [Listeria ivanovii FSL F6-596]
 gi|313628602|gb|EFR97025.1| DNA repair protein RecN [Listeria ivanovii FSL F6-596]
          Length = 563

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG       D  R
Sbjct: 2   LQEMTIKNFAIIESLSLSFREGMTVLTGETGAGKSIIIDALGLLVGGRG-----STDFIR 56

Query: 67  IGSP--SFFSTFARVEGMEGLADISIK-----------LETRDDRSVR-CLQINDVVIRV 112
            G         FA  E      D  ++           LE    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFALAEDNLACRDALLEHGIDATDNMVVLERNLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    + +   +++    +++ + + 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKSALTKYQANFKEYQSISKE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197


>gi|313234281|emb|CBY10348.1| unnamed protein product [Oikopleura dioica]
          Length = 1169

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 88/286 (30%), Gaps = 37/286 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++Y     +  FD       G NG GK+NIL++I FL   S     R  
Sbjct: 1   MFIKSIELDGFKSYARRTEIKDFDPLFNAITGLNGSGKSNILDSICFLLGISQLTQVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+  + G          +            G      I +  +   +   +   IN 
Sbjct: 61  SLNDLVYKNGQAGITRATVSITFDNRDKEKSPIGYHDSDKIVVTRQINVNGKNK-YMING 119

Query: 108 VVIR--VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI------DPRHRRRM 159
           V  +   V +  + + ++   P    I  G   +        + ++         +  + 
Sbjct: 120 VHAQNNRVADFFQSVGMNINNP-HFLIMQGRVTKVMNMKPMEILSMIEEATGTRMYESKK 178

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
               R +        +    +     +   +     K+   R   +     L  E    +
Sbjct: 179 DSCTRAIE------KKQLKYNELTKILNEDLHPQIEKLKGDRESYM-RYQQLTREIEHSQ 231

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
            F    ++       +  QS    K     +L + R+ +S  + T 
Sbjct: 232 KF---VIAFKYHSLDEKLQSADEAKARLEAELQNAREEESRLKETQ 274


>gi|251797475|ref|YP_003012206.1| chromosome segregation protein SMC [Paenibacillus sp. JDR-2]
 gi|247545101|gb|ACT02120.1| chromosome segregation protein SMC [Paenibacillus sp. JDR-2]
          Length = 1195

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +S F+++A    + F    T  VG NG GK+NI + I ++      +  R   
Sbjct: 1   MFLKRIELSGFKSFADKTEMEFVTGITAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +     +  V       D ++ LE  +    R +  + 
Sbjct: 61  MEDIIFAGSDARKAVNYGEVSLTLDNGDGALPLEYNEVTVTRRVHRSG 108


>gi|169824647|ref|YP_001692258.1| hypothetical protein FMG_0950 [Finegoldia magna ATCC 29328]
 gi|167831452|dbj|BAG08368.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
          Length = 542

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 7  IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          IK + I  F+ +     L  +    I VG+N  GK+ ILEAI     G
Sbjct: 2  IKKVRIKNFKCFKDWFELDLNGGINILVGNNEEGKSTILEAIHLALTG 49


>gi|170589952|ref|XP_001899737.1| SMC proteins Flexible Hinge Domain containing protein [Brugia
           malayi]
 gi|158592863|gb|EDP31459.1| SMC proteins Flexible Hinge Domain containing protein [Brugia
           malayi]
          Length = 1204

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYA 62
           + IK +NIS FR+Y    +  F  +H + VG NG GK+N   AI   LS      +A   
Sbjct: 1   MYIKEVNISGFRSYRETTVNDFSPRHNVVVGRNGSGKSNFFFAIQFVLSDEFSHLKAEQR 60

Query: 63  D-VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
             +   G+    +T +     +      + +E  + R +R +
Sbjct: 61  QGLIHEGTGDRVTTASVEIVFDNADHRIVAIEANEVRVLRRV 102



 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQI 345
            S G++ +V + +  A           AP  L DEI A LD   R A+  ++ ++   +Q 
Sbjct: 1103 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDAALDAQHRKAVADMIHELSENAQF 1157

Query: 346  FMTGTDKSVFDS 357
              T     + DS
Sbjct: 1158 ITTTFRPELLDS 1169


>gi|229580808|ref|YP_002839207.1| hypothetical protein YN1551_0087 [Sulfolobus islandicus Y.N.15.51]
 gi|228011524|gb|ACP47285.1| conserved hypothetical protein [Sulfolobus islandicus Y.N.15.51]
          Length = 495

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 15/110 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF----LSPGRGFRRAS 60
           ++I    +S FR+ + + L       + VG NG GKTN+  +I      LS G   R   
Sbjct: 1   MRITEFYVSNFRSLSEVNLKDLGGFNVVVGYNGYGKTNLFSSIFLFIKNLSAGIEKRSVE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDV 108
                   +  F   +   +G +    I I  K+E   + + + +  N  
Sbjct: 61  DR------NQEFILLW---QGYDVSKPIMIGGKVEFSPEEANKIVGKNQK 101


>gi|163848467|ref|YP_001636511.1| chromosome segregation protein SMC [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526396|ref|YP_002570867.1| chromosome segregation protein SMC [Chloroflexus sp. Y-400-fl]
 gi|163669756|gb|ABY36122.1| chromosome segregation protein SMC [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450275|gb|ACM54541.1| chromosome segregation protein SMC [Chloroflexus sp. Y-400-fl]
          Length = 1186

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 74/229 (32%), Gaps = 33/229 (14%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L I  F+ +A+  +  F    T  VG NG GK+N+ +A+ ++   +     R   
Sbjct: 1   MYLKRLEIQGFKTFATRTVFEFQPGITAVVGPNGSGKSNLADAVRWVLGEQSMAALRCKQ 60

Query: 61  YADVTRIGS-----PSFFSTFARVEGMEGLADI---SIKLETRDDRSV-RCLQINDVVIR 111
             ++   G               ++  + L  +    + +  R  R+      IN   +R
Sbjct: 61  AGELLFAGGGKRPPAGLAEVALTIDNSDRLLPLDFDEVTITRRVTRTGENEYFINRARVR 120

Query: 112 VVDELN-----KHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFER 164
           + D L                 +D   +    ERRR  +    +   + R    +     
Sbjct: 121 LRDLLAAVEPLGGSYTIINQGLVDAALTLRPSERRRLFEDAAEIGGFELRKAEAIRRLRE 180

Query: 165 L-------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                         +  R R L      +      +A++  L  + + A
Sbjct: 181 SETNLQRVADLLADLEPRLRSLRRQAGQARQYREWQAELHTLLARWHHA 229


>gi|313619061|gb|EFR90872.1| DNA repair protein RecN [Listeria innocua FSL S4-378]
          Length = 206

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG       D  R
Sbjct: 2   LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----STDFIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G               +     A +E     +D  + LE    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFALAEDNLACRNALLENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    +     +++    +++ ++R 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPALTKYQTNFKEYQTILRE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WQNWTKNERELAQRLDMLRFQ 197


>gi|290508709|ref|ZP_06548080.1| ATP-dependent endonuclease [Klebsiella sp. 1_1_55]
 gi|289778103|gb|EFD86100.1| ATP-dependent endonuclease [Klebsiella sp. 1_1_55]
          Length = 594

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 114/361 (31%), Gaps = 63/361 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           ++I  + +  F N++ + +       + VG+N VGK+N +  +   L PG   R      
Sbjct: 1   MRISRIRLINFANFSDVDVETGESI-VIVGENKVGKSNFIRGLQLILDPGLSER---DRQ 56

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +   G   F+      E +    +IS+ L    D +                L  HL   
Sbjct: 57  L---GFEHFWDGLGE-EKLGETIEISVDLTDFTDDA---------------RLMAHLNDC 97

Query: 124 WLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            L P       G  M  R   RF  +      P     + D+E ++         G  D 
Sbjct: 98  VLNP-------GPPMVARLTYRFQPKTELNRAP---ESLKDYEYVI--------FGGADP 139

Query: 181 SW--------CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSL-T 229
                        I+ Q A    +  ++  R   +  L   +   +  E    I+  +  
Sbjct: 140 DMHIGGAFRRMLPIDVQGALRDAEKDLSSWRNSPLRPLIEELSASLDDETREEIQTQVDE 199

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL-IGPHRSD-----LIVDYCDKAIT 283
              +        A  E  +++L            +L + P R D     L +        
Sbjct: 200 AQRELADHDEVAATAERISERLIAIAGKQHAVPVSLGLAPTRVDALLRSLRLLLDSGIRG 259

Query: 284 IAHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           I   S G   ++ + +  L   RL+ +        +++E  AHL    +  ++R      
Sbjct: 260 IGDASLGTANLIFLALKSLELDRLVDDGERDHTFFVVEEPEAHLHPHVQRLVYRYFLGTD 319

Query: 343 S 343
            
Sbjct: 320 G 320


>gi|296132527|ref|YP_003639774.1| SMC domain protein [Thermincola sp. JR]
 gi|296031105|gb|ADG81873.1| SMC domain protein [Thermincola potens JR]
          Length = 980

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +KI+ + +   ++Y    + F+       G NG GK+ I+EAI F
Sbjct: 1  MKIRKIRLQNIKSYVDQEITFNEGVNFISGINGAGKSTIIEAIGF 45


>gi|218439002|ref|YP_002377331.1| ATPase [Cyanothece sp. PCC 7424]
 gi|218171730|gb|ACK70463.1| ATPase [Cyanothece sp. PCC 7424]
          Length = 399

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/372 (14%), Positives = 107/372 (28%), Gaps = 54/372 (14%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFR-----R 58
           +I++L +  +R    L L      T+ +G NG GK+ I +  +FLS     G R     R
Sbjct: 8   RIEYLRVQNYRALRDLELKNITPLTVLLGPNGSGKSTIFDVFAFLSECFTLGLRKAWDKR 67

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
             + ++   G   +     + +  +    I+  L   ++     +   + +     +  +
Sbjct: 68  GRFKELRTRGQDGYIVIELKYKETKESPIITYHLAISENNKGPYVA-EEWLQWRRGKTGQ 126

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
             R         +  +G   ++    D       P         +     R   L     
Sbjct: 127 PFRFLNFKEGEGQATTGEMPDKEDKRDNEKLE-SPEFLAVSTLGQFAKHPRVSALRR--- 182

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                             I    +  + A         Q E     +LS +G        
Sbjct: 183 -----------------FITGWYLSYLTA----DNTRTQPEAGEQERLSASG---DNLPN 218

Query: 239 SFCALKEEYAKKLFD-----GRKMDSMSRRTLIGPHRSDLIVDYCD----KAITIAHGST 289
               LKE+Y ++L         ++  + +          L++   D    + I     S 
Sbjct: 219 VIQYLKEQYPERLEHILNTLSNRIPRLEKVDASIMPDGRLLLQIKDAPFTQPILAKFASD 278

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI--VTDIGSQIFM 347
           G  K++     L              ++ ++E   HL       L          +Q+ +
Sbjct: 279 GTLKMLAYLTVL-------YDPDPPQLVGIEEPENHLHPRLLPELAEECRAASANTQLMI 331

Query: 348 TGTDKSVFDSLN 359
           T       D L 
Sbjct: 332 TTHSPFFVDGLK 343


>gi|160947507|ref|ZP_02094674.1| hypothetical protein PEPMIC_01441 [Parvimonas micra ATCC 33270]
 gi|158446641|gb|EDP23636.1| hypothetical protein PEPMIC_01441 [Parvimonas micra ATCC 33270]
          Length = 1178

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          +++K + I+ F+++A  ++L F+   T  +G NG GK+N+ +A+   L     +  R + 
Sbjct: 1  MRLKSIEINGFKSFADKIKLDFETNITAIIGPNGSGKSNVADAVRWVLGEQSAKTLRGSK 60

Query: 61 YADVTRIGSPS 71
            DV   G+ +
Sbjct: 61 MEDVIFSGTDN 71


>gi|159477821|ref|XP_001697007.1| structural maintenance of chromosomes protein 6B [Chlamydomonas
           reinhardtii]
 gi|158274919|gb|EDP00699.1| structural maintenance of chromosomes protein 6B [Chlamydomonas
           reinhardtii]
          Length = 1106

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 35/167 (20%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
            ++ + +  F  + +L + F    T   G NG GK+ +L+ +     G       R ++ 
Sbjct: 299 HLRRIQLINFMCHKNLEVEFGPHVTFLSGQNGSGKSAVLQGLQ-ACLGASARDTSRGSNL 357

Query: 62  ADVTRIGSPSFFSTF------------------ARVEGMEGLADISIKLETRDDRS---- 99
           +   ++G  +                        R E    +  I  KL ++   +    
Sbjct: 358 SGWVKVGCNTASVALELWNTREEDTAAGQRTVPFRYELYGPVIKIVRKLHSKGGGTFQLY 417

Query: 100 ------VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMER 140
                 V+  QI     + V  L  H  +    P    I +     R
Sbjct: 418 NAHGVEVKQAQIGQSPAKEVSALADHFHVDAANP--LMIITQDMSAR 462


>gi|24379903|ref|NP_721858.1| putative chromosome segregation ATPase; SMC protein [Streptococcus
           mutans UA159]
 gi|24377881|gb|AAN59164.1|AE014983_5 putative chromosome segregation ATPase; SMC protein [Streptococcus
           mutans UA159]
          Length = 1178

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 27/165 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEMQGFKSFADKTKVEFDRGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G+ +              ++ A ++  +    I   +    D       I+  
Sbjct: 61  MPDVIFAGTENRKPLNYAQVTVILDNSDAFIKDAQEEIRIERHIYRNGDSD---YLIDGK 117

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +R+ D         L +          ++ IF+    ERR   +
Sbjct: 118 KVRLRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRSIFE 162


>gi|331220243|ref|XP_003322797.1| condensin subunit [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
 gi|309301787|gb|EFP78378.1| condensin subunit [Puccinia graminis f. sp. tritici CRL
           75-36-700-3]
          Length = 1094

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 18/133 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + I  L +  F++Y     +  FD       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MHIVELILDGFKSYPVRTTISGFDPSFNAVTGLNGSGKSNILDAICFVLGITNLSAVRAN 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          V            G E  A++++  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTVVFDNRDKTKSPLGFEQYAEVTVTRQILMGGATKYL-ING 119

Query: 108 VVIRVVDELNKHL 120
                   L + +
Sbjct: 120 HRSTQNSLLREEI 132


>gi|296814434|ref|XP_002847554.1| Spr18 protein [Arthroderma otae CBS 113480]
 gi|238840579|gb|EEQ30241.1| Spr18 protein [Arthroderma otae CBS 113480]
          Length = 1186

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 3/114 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I  + ++ F  Y S       +  + +G NG GK+  + AI   L  G G+  R    A+
Sbjct: 112 IVRVKLTNFVTYTSAECYPGPRLNMVIGPNGTGKSTFVCAICLGLGWGPGYLGRAKDVAE 171

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
             + G+           G +   +  I    + + +     IN   +R    L+
Sbjct: 172 FVKHGADEAIIEIELKAGADMNQNPIICRTIKREGNKSMFTINGKAVRQNMVLS 225


>gi|319947467|ref|ZP_08021699.1| DNA repair protein RecN [Streptococcus australis ATCC 700641]
 gi|319746407|gb|EFV98668.1| DNA repair protein RecN [Streptococcus australis ATCC 700641]
          Length = 554

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/381 (15%), Positives = 129/381 (33%), Gaps = 66/381 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEIALNFETGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   ++ I+ E  ++ RSV  +    V + V
Sbjct: 57  HGAPKAEIEGLFAIDENRALQQLFEEQGLEWAEELIIRREIFQNGRSVSRINGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLS---MERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
           +  + +HL +                       F +   FA    +R    +++ L +  
Sbjct: 117 LKAVGQHL-VDIHGQHDQEELMRAPLHIAMLDSFGEDAFFATKKAYRETFENYKSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMINA--LSSLIMEYVQK 218
            ++      + +    +E Q++E+          V++   R  ++N   ++  +      
Sbjct: 176 LQIQKNNQENQARIEMLEYQISEIEAAALSLDEDVQLEQERQRLLNHKMIADTLSNAYAM 235

Query: 219 ENFPHIKLSLTGFLDG--------KFDQSFCALKEEYAK-----KLFDGRKMDSMSRRTL 265
            +      SL+             ++D  +  L ++ A+     +    R  D +     
Sbjct: 236 LDAEDFS-SLSNVRSAMNDLQGIEEYDPEYKTLSDQLAETYYTLEDLTKRLEDLVDGLDF 294

Query: 266 IGPHRSDLIVDY-CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
            G     +        +IT  +G  G+ K VL          +   +    +L     S+
Sbjct: 295 DGNRLMQVEARLDLIHSITRKYG--GQVKDVL--------DYLEQISKEYSLLTGGGTSS 344

Query: 325 HLDEDKRNALFRIVTDIGSQI 345
                    L + +  +  Q+
Sbjct: 345 E-------DLEKELKSMEGQL 358


>gi|31544374|ref|NP_852952.1| chromosome segregation ATPase SMC [Mycoplasma gallisepticum str.
           R(low)]
 gi|31541218|gb|AAP56520.1| Chromosome segregation ATPase SMC [Mycoplasma gallisepticum str.
           R(low)]
 gi|284930416|gb|ADC30355.1| Chromosome segregation ATPase SMC [Mycoplasma gallisepticum str.
           R(high)]
          Length = 983

 Score = 54.9 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 94/286 (32%), Gaps = 48/286 (16%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62
           +K  +   F++YA  +   FD   T  VG NG GK+N+++A+ ++   R     R  +  
Sbjct: 4   LKKFHAQGFKSYADNISFTFDEHVTGIVGPNGSGKSNVVDALKWVLGERSMKNLRGKTSD 63

Query: 63  DVTRIGSPS-FFSTFARVE---------GMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           DV   GS     S FA V            +   +I++         V    IN+     
Sbjct: 64  DVIFFGSQEKPASKFAEVSLTFDNSQGYLHDKRKEITVTRRVYRGSGVSEYLINNEP-SS 122

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + E+N     S L      I S             +RR+  +        R+ ++  D  
Sbjct: 123 LKEINDIFLDSGLTKGSLCIISQNTVSSFIEAKPEDRRQIFEDAAGIG--RYAKKKQDAI 180

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV----QKE 219
           R +   N  L E                     I       +  L+    + +     KE
Sbjct: 181 RQIARTNDNLKEI------------------TTIVNELNRDLKKLNQQAEKAILYAETKE 222

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
               ++++L+        +   AL E+ A+      K D   +   
Sbjct: 223 KLKDLEITLSVNEYLISQKEIEALSEQIAEIDERLLKNDPQLQINQ 268


>gi|187778955|ref|ZP_02995428.1| hypothetical protein CLOSPO_02550 [Clostridium sporogenes ATCC
          15579]
 gi|187772580|gb|EDU36382.1| hypothetical protein CLOSPO_02550 [Clostridium sporogenes ATCC
          15579]
          Length = 1193

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K + I  F+++A    L+F    T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1  MFLKSIEIRGFKSFADKTELMFKQGVTAIVGPNGSGKSNISDAVKWVLGEQSVKSLRGSK 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MEDVIFAGTQ 70


>gi|169824543|ref|YP_001692154.1| chromosome segregation SMC protein [Finegoldia magna ATCC 29328]
 gi|167831348|dbj|BAG08264.1| chromosome segregation SMC protein [Finegoldia magna ATCC 29328]
          Length = 1167

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 99/283 (34%), Gaps = 36/283 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++   ++L FD   T  VG NG GK+NI +AI   L     +  R   
Sbjct: 1   MGLKSVEIQGFKSFKDKIKLNFDNPITAIVGPNGSGKSNISDAILWVLGEQSAKNLRGNK 60

Query: 61  YADVTRIG-SPSFFSTFARV---------EGMEGLADISIKLETRDDRSVRCLQINDVVI 110
             DV   G        FA+V         + ++       +   R   S   +  N V +
Sbjct: 61  MQDVIFAGTQKEKAVNFAQVSITFENDLWKDIDYQEITVTRRVFRTGESEYYINKNQVRL 120

Query: 111 RVVDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
           + V EL       K          +D I S  S +RR   +        ++ +      +
Sbjct: 121 KDVKELFLNTGIGKEGYSVIGQGKIDEILSSKSEDRRELFEEASGISKQKYIKEQS--VK 178

Query: 165 LMRGRNRLLTEG----YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
            +   N  L                +E + ++        +  ++      +       +
Sbjct: 179 KLEQTNENLLRIEDILVSQIDRLKYLEKESSK------AKKGMVLEEQLKEMEIQKAILD 232

Query: 221 FPHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFDGRKMDSMS 261
              + ++L+  +D K   DQS   +K +  +  ++ ++ + + 
Sbjct: 233 IEKLSITLSDVIDKKEINDQSLIEIKSKLVE--YENKRNELLE 273


>gi|220927386|ref|YP_002502688.1| chromosome segregation protein SMC [Methylobacterium nodulans ORS
           2060]
 gi|219951993|gb|ACL62385.1| chromosome segregation protein SMC [Methylobacterium nodulans ORS
           2060]
          Length = 1148

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 59/166 (35%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K+  L I  F+ +      + +   T  +G NG GK+N++EA+ ++         R + 
Sbjct: 1   MKLTRLRIVGFKTFVEPSEFLIEPGLTGIIGPNGCGKSNLVEALRWVMGENSHKSLRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGL-------ADISIKLETRDDRSVRCLQINDV 108
             DV   GS      S       ++            AD+   +   D  +    +IN  
Sbjct: 61  MDDVIFSGSGSRPGRSHAEVTLSLDNSARTAPAAFNGADVLEVMRRIDRGAGSTYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR 146
            +R  D   L          P+M R      + +     RRR L+ 
Sbjct: 121 EVRARDVQLLFADAATGARSPAMVRQGQVAEMIAAKPQARRRILED 166


>gi|195952860|ref|YP_002121150.1| chromosome segregation protein SMC [Hydrogenobaculum sp. Y04AAS1]
 gi|195932472|gb|ACG57172.1| chromosome segregation protein SMC [Hydrogenobaculum sp. Y04AAS1]
          Length = 1148

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASY 61
           I+ + ++ F++Y    L +         VG NG GK+NI +AISF   LS  +  R  + 
Sbjct: 6   IEKIVVTNFKSYGTEKLEIPIGEGFIGIVGPNGAGKSNIGDAISFGLGLSTSKTMRAKNL 65

Query: 62  ADVT--RIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVDELN 117
             +   + G    F          +        +     +  + + ++N  +IR  D   
Sbjct: 66  THLIYSKQGQREDFAQVDIHFSNPQIFGYDEFVVTRIIYKDGKSVYKLNGKIIREKDLHL 125

Query: 118 KHLR--------ISWLVPSMDRIFSGLSMERRRFLDRM 147
              R           L   + +      +ERR+ ++ +
Sbjct: 126 ILARGGIYKEGYNIVLQGDIVKFVKITPLERRKIIEDV 163



 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 72/221 (32%), Gaps = 19/221 (8%)

Query: 165  LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +   +N+  ++   +      +   M+++ +K      E +N L     +  Q       
Sbjct: 924  IYEEQNQSASKLKEELERTKKLLESMSDINLKAEEEYEETLNRLKDYKEKLDQLIKDKQA 983

Query: 225  KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--------LIVD 276
              ++   +D K   +F        K   +     S   +  +     +        + V 
Sbjct: 984  IKAMIEEIDRKKYSAFMEAFNNIRKNFKEIYAKVSYQGKADLSLDNEEDPFSGGVSIFVK 1043

Query: 277  YCDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
               K +      S GEQ +  + +  A           +     DEI AHLDE     L 
Sbjct: 1044 PRGKDVQYVEAMSGGEQTLAAMSLIFA-----IQEYKPSVFYYFDEIDAHLDEANAYLLG 1098

Query: 336  RIVTD--IGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
            +++ +     Q F+  T +    +  +  K + ++N   + 
Sbjct: 1099 QMIKEKSKNVQ-FIVVTLRENLANFAD--KLIGVTNKDGIS 1136


>gi|21244664|ref|NP_644246.1| recombination-like protein [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21110350|gb|AAM38782.1| recombination related protein [Xanthomonas axonopodis pv. citri
          str. 306]
          Length = 61

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
           L I+ FR   +  L F +   + VG N  GKT I++A+      R           R+G
Sbjct: 3  ELTITNFRKINNAVLHFQSGLNVLVGANNAGKTAIVDAL------RSLLAGHDEPYPRLG 56

Query: 69 SP 70
          +P
Sbjct: 57 NP 58


>gi|157130357|ref|XP_001655676.1| structural maintenance of chromosomes 6 smc6 [Aedes aegypti]
 gi|108881936|gb|EAT46161.1| structural maintenance of chromosomes 6 smc6 [Aedes aegypti]
          Length = 1107

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           KI  + +  F  + +L + F+ +  + VG+NG GK+ +L A++    G       R +S 
Sbjct: 76  KILKMQLKNFMCHRNLVVEFNKRANLLVGNNGSGKSAVLAALTI-GLGCSANLTNRSSSV 134

Query: 62  ADVTRIGS 69
             + + G 
Sbjct: 135 KQLIKHGE 142


>gi|319943268|ref|ZP_08017551.1| DNA repair protein RecN [Lautropia mirabilis ATCC 51599]
 gi|319743810|gb|EFV96214.1| DNA repair protein RecN [Lautropia mirabilis ATCC 51599]
          Length = 551

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 88/271 (32%), Gaps = 43/271 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +++L + +F    S  + F    T+  G+ G GK+ +L+A+  +  GRG      A + R
Sbjct: 2   LQWLRLRDFVIVESAEIEFGPGFTVLTGETGAGKSILLDAMGLVLGGRG-----DATLVR 56

Query: 67  IGSP-----SFFSTFARVEGMEGLADI-----SIKLETRDDRSVR-CLQINDVV--IRVV 113
            G+      + F     +       D+      + L    ++  R   QIN     I  +
Sbjct: 57  EGAERADISALFGIDDTLAAWLAEHDLAGDPGQLLLRRIVEKDGRSRAQINGHPSTIARL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
            EL + L           +       +R  LDR+               ERL+    +  
Sbjct: 117 RELGEQLVDIHGQHESQHLLR--PGAQRELLDRLAGQ------------ERLLADLAQGW 162

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FL 232
                 +    +     A  G +    R   I  L   I E  Q    P    +L+    
Sbjct: 163 QRWQQAAKALET-----ARSGSREEAIR---IERLQWEIDELTQLRLAPGEWEALSAEQQ 214

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
                    A  +  A  L   R  D+++ R
Sbjct: 215 RLAHAHDLLAGADALANALE--RDEDAIAGR 243


>gi|284931181|gb|ADC31119.1| Chromosome segregation ATPase SMC [Mycoplasma gallisepticum str. F]
          Length = 983

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/286 (18%), Positives = 94/286 (32%), Gaps = 48/286 (16%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62
           +K  +   F++YA  +   FD   T  VG NG GK+N+++A+ ++   R     R  +  
Sbjct: 4   LKKFHAQGFKSYADNISFTFDEHVTGIVGPNGSGKSNVVDALKWVLGERSMKNLRGKTSD 63

Query: 63  DVTRIGSPS-FFSTFARVE---------GMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           DV   GS     S FA V            +   +I++         V    IN+     
Sbjct: 64  DVIFFGSQEKPASKFAEVSLTFDNSQGYLHDKRKEITVTRRVYRGSGVSEYLINNEP-SS 122

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + E+N     S L      I S             +RR+  +        R+ ++  D  
Sbjct: 123 LKEINDIFLDSGLTKGSLCIISQNTVSSFIEAKPEDRRQIFEDAAGIG--RYAKKKQDAI 180

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV----QKE 219
           R +   N  L E                     I       +  L+    + +     KE
Sbjct: 181 RQIARTNDNLKEI------------------TTIVNELNRDLKKLNQQAEKAILYAETKE 222

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
               ++++L+        +   AL E+ A+      K D   +   
Sbjct: 223 KLKDLEITLSVNEYLISQKEIEALSEQIAEIDERLLKNDPQLQINQ 268


>gi|225848784|ref|YP_002728948.1| chromosome segregation protein SMC [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644251|gb|ACN99301.1| chromosome segregation protein SMC [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 1171

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 103/286 (36%), Gaps = 38/286 (13%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           I  +N+  F++Y    L +      T  VG NG GK+N+ +AI F    +  +  R    
Sbjct: 6   IDRINVFGFKSYGERYLSIPLGEGFTAIVGPNGSGKSNLGDAIVFCLGIASAKAMRAIKL 65

Query: 62  ADVTRIGSPSFFSTFARVE------GMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
            D+    S    + +A VE      G   L    + +  + D S +   +IN    +   
Sbjct: 66  TDLI-FSSKGKTAPYAEVEIIFKNNGAFPLNTEEVSISRKVDLSGKSTYKINSRPAKQQ- 123

Query: 115 ELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRMIDFE 163
           E+ + L ++ +      I +             ERR  +     +   + R ++ + D  
Sbjct: 124 EVEELLTLAGIPTQGYNIVTQGDIYKFVKMTPSERRDLISDIAGITQYEERKQKAIQDLN 183

Query: 164 R----------LMRGRNRLLT---EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
           +          ++   +  L    +   D+     +E Q+ +L   I  A++ ++     
Sbjct: 184 QSNEKIEKVKAILNEISHTLKKLEKEKEDALLAIDLENQIQQLQNAIKSAKLYLLLKQKE 243

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            ++  + +       L L    + +  +      ++  +KL   ++
Sbjct: 244 EVLNQITQVEDQINNLYLEKEKNIENQKEIINNIKQLEEKLNHIQE 289


>gi|330802950|ref|XP_003289474.1| hypothetical protein DICPUDRAFT_80252 [Dictyostelium purpureum]
 gi|325080432|gb|EGC33988.1| hypothetical protein DICPUDRAFT_80252 [Dictyostelium purpureum]
          Length = 1357

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 90/292 (30%), Gaps = 41/292 (14%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRASY 61
           + I+ L I  F++Y    L       +  +G NG GK+NI++AI F+   +    R    
Sbjct: 1   MGIRLLEICNFKSYRGKHLIGPFKDFSCVIGPNGSGKSNIMDAIIFVLGHKTAQIRGTKL 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           +D+              VE       I+   + +   +      +   +   +    HL+
Sbjct: 61  SDLVNNQEDKDEDLSTYVEITFFHKGITYMFKRKIIGNGSKYYYSGSEV-SYENFQGHLK 119

Query: 122 IS--------WLVPSMD--RIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERL---- 165
                     + V   D   I +    +   F++ +  +      +   +    +     
Sbjct: 120 EIGIDIATRNFFVFQGDVESIATQNPKQITSFIEEVSGSTKYVKEYNDLLSGKNKAEDDV 179

Query: 166 ----MRGRNRLLTEGYFDSSWCSS--------------IEAQMAELGVKINIARVE--MI 205
                + +     +  +   W                  + Q+A+L       R E  ++
Sbjct: 180 FAAYAKRKTIAFEKEQYKEQWSEVKEYQTMQDGVDALRRDQQLAKLYYTTKEMRKEGKLL 239

Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           +   + I     +      + + T        +   +L++E   +L   +K 
Sbjct: 240 DESRNRIASINDEMKPTEAEYTATSIKQASLHKEVMSLEDEL-TRLAKSKKK 290


>gi|134079782|emb|CAK40917.1| unnamed protein product [Aspergillus niger]
          Length = 1136

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 99/349 (28%), Gaps = 61/349 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +    +         VG NG GK+ +L AI+    G+     R  S   
Sbjct: 97  LERVECYNFMCHDHFYVDLGPLINFIVGKNGSGKSAVLTAITLCLGGKASTTNRGQSLKS 156

Query: 64  VTRIGSPSFFSTFARVEGMEGL---------ADISIKLETRDDRSVRCLQIND----VVI 110
             + G              +G            I            +    N        
Sbjct: 157 FIKEGKEHATIVVRIKNQGDGAYMPDDYGKFITIERHFSRNGTSGFKIRAENGRIMSTKK 216

Query: 111 RVVDELNKHLRISWLVP------SMDRIFSG--LSMERRRFL--DRMVFAIDPRH----- 155
             +D +  +  + +  P       M R F G     E+ +F      +  +D  +     
Sbjct: 217 SELDAIIDYFTLQFDNPMNVLSQDMARQFIGSSSPSEKYKFFVKGVQLEQLDQDYRLIEE 276

Query: 156 --------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSI-------EAQMAELGVKINIA 200
                    R       +++ R          S+   S+         QMA    +I   
Sbjct: 277 SGDQIEEKLRGREQDIAILQSRKETAKRKLDISNQHDSLRNRIRNVRNQMA--WAQIIHN 334

Query: 201 ---RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
                ++ + L   I+    +       LS        FD +  A   E        R+ 
Sbjct: 335 VSDSQQIRDTLDEEILAADNQIAADEADLS-------NFDVTISAAAAELEAAAESVRQA 387

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
           ++   +      + ++ V + D  +T  HG   EQ+ +   +  A  R+
Sbjct: 388 NAKRGQVQE--EKDEIQVRW-DAQMTERHGLQAEQRRIREYLKAAEGRI 433


>gi|226823349|ref|NP_001152812.1| structural maintenance of chromosomes 1A [Nasonia vitripennis]
          Length = 1227

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 11/121 (9%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           +K + +  F++Y   L +      T  +G NG GK+N ++AISF+        R   + +
Sbjct: 5   LKHIEVDNFKSYKGRLTIGPLKSFTAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRFNE 64

Query: 64  VTR---IGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           +     IG P     S  A  E  +G              S    +IN  V+     LN+
Sbjct: 65  LIHGASIGQPVARSASVTAVFELEDGT---EKSFMRSVHGSSSEHRINGGVVTSQVYLNE 121

Query: 119 H 119
            
Sbjct: 122 L 122


>gi|183983575|ref|YP_001851866.1| ATP-dependent OLD family endonuclease [Mycobacterium marinum M]
 gi|183176901|gb|ACC42011.1| ATP-dependent endonuclease (old family) [Mycobacterium marinum M]
          Length = 532

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          IK + I  +R + +  L F  +  I VGDN +GK+ ++EAI+     R
Sbjct: 2  IKKITIKNYRIFQNFELEFSDRLNILVGDNDIGKSTVIEAINLALTSR 49


>gi|158320493|ref|YP_001513000.1| chromosome segregation protein SMC [Alkaliphilus oremlandii
          OhILAs]
 gi|158140692|gb|ABW19004.1| chromosome segregation protein SMC [Alkaliphilus oremlandii
          OhILAs]
          Length = 1194

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          +++K L I  F+++A+ + + F++  T  VG NG GK+NI ++I   L     +  R + 
Sbjct: 1  MQLKKLEIQGFKSFANKIEINFESGITGVVGPNGSGKSNISDSIRWVLGEQSAKTLRGSK 60

Query: 61 YADVTRIGSPS 71
            DV   G+  
Sbjct: 61 MEDVIFSGAAD 71


>gi|86159692|ref|YP_466477.1| OLD family-like ATP-dependent endonuclease [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776203|gb|ABC83040.1| OLD family-like ATP-dependent endonuclease [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 758

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 5   IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
           + +  L I  FR + S  + + F A   + +G+N VGKT I++A+  L
Sbjct: 96  MHLATLRIENFRCFGSSGITIEFQAGMNVILGENNVGKTAIVDALRLL 143


>gi|322496775|emb|CBZ31845.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1198

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 14/124 (11%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRAS 60
           + IK + IS FR+Y           +  + VG NG GK+N   AI F+   +    R A 
Sbjct: 1   MFIKNIIISGFRSYREQSFPDGLSPKTNVIVGKNGSGKSNFFAAIQFVLNEKFANLRAAE 60

Query: 61  YADVTRIGSPS----------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
             ++  +GS            F ++  R+       +  +++           ++ND   
Sbjct: 61  RKELFHVGSGRPALSVFVEIVFDNSDGRLVIPGRAEEPEVRIRRTIGLKQDEFRVNDRKF 120

Query: 111 RVVD 114
              D
Sbjct: 121 SASD 124



 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 92/277 (33%), Gaps = 27/277 (9%)

Query: 92   LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
            L+ R D + R      V+++  DE  + +R   ++P     F   S+ +  +        
Sbjct: 911  LQERKDVADRTQMQRSVLVQRRDEALQKIRQLGVLPQGVAKFESASLGKLMY-------- 962

Query: 152  DPRHRRRMIDFERLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIARVEMINALSS 210
               H +   +  + +   NR   + Y         + +Q   L  +++    E++  L +
Sbjct: 963  ---HLKAANEKLKALSHVNRKAVDQYATLQEAMKDLTSQQETLAKELDSI-HELMEHLDA 1018

Query: 211  LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
               E +++     ++               C+ + +        +K D  +        R
Sbjct: 1019 KKEEAIERTYK-QVQYQFEEVFKQLVGVESCSAELQLVASAAPNKKEDPYTG------AR 1071

Query: 271  SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
              +     +    +   S G++ +V + +  A           AP  L DEI A LD + 
Sbjct: 1072 IKVSFGLGNPVSHLDQLSGGQKSLVALALIFA-----IQRCDPAPFYLFDEIDAALDAEY 1126

Query: 331  RNALFRIV--TDIGSQIFMTGTDKSVFDSLNETAKFM 365
            R ++  ++       Q  +      + D  ++     
Sbjct: 1127 RTSVANMMARQSGECQFLVATFKTELLDVADKVLGIF 1163


>gi|283852888|ref|ZP_06370149.1| SMC domain protein [Desulfovibrio sp. FW1012B]
 gi|283571717|gb|EFC19716.1| SMC domain protein [Desulfovibrio sp. FW1012B]
          Length = 539

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 86/265 (32%), Gaps = 49/265 (18%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++IK L + +      L L F     +  G+ G GK+ I+ A++FL+  +      
Sbjct: 1   MIEVLRIKNLALID-----DLELEFGQGLNVLTGETGAGKSFIVSAVNFLTGEKMH---- 51

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+ R G          V       D+ ++ E         + I D +           
Sbjct: 52  -PDLVRAGCEKAVVEALFV---LDGQDLILRRELAAGTGRSRIYIGDGLASREALAALRP 107

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           ++        +        +   LD  +    P            +  +NRLL E     
Sbjct: 108 KLLLHASQHGQQRLLQPAFQAALLDGFLADDQP------------LAEKNRLLRE----- 150

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                    +A++  +I       ++A ++ + E  Q   F H ++S    L G+ D+  
Sbjct: 151 ---------LADIAGQI-----RALDAKAASLEEKRQFLEFQHAEISKVAPLPGEEDELI 196

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTL 265
                     L + RK      R L
Sbjct: 197 GR-----RAALAESRKASEALARAL 216


>gi|50542984|ref|XP_499658.1| YALI0A01562p [Yarrowia lipolytica]
 gi|49645523|emb|CAG83578.1| YALI0A01562p [Yarrowia lipolytica]
          Length = 1117

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 83/270 (30%), Gaps = 27/270 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRRAS 60
           I  + +    +Y    + F       +G NG GK+ +L AI           G+      
Sbjct: 72  ILQIYMKNVMSYDECLVNFGPTLNFVIGPNGSGKSTMLAAICLAFAAPITCMGKA--ALK 129

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI------RVVD 114
              + +  +         V+   G+ D++ K     D  +    IN              
Sbjct: 130 AQQLIKS-TKDALEVRVVVKNFAGMPDLTFKRTLTRDEKLGRFFINGKSATMKEVRATAR 188

Query: 115 EL-NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           EL  + + ++  +P   R+    +M  +  L  +    D  ++     ++ L+       
Sbjct: 189 ELDIQIVSMTRFLPQD-RVKDFTTMSPKELL--ITTMEDVGYQNMRSHYDSLVNQ----Q 241

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
                D          +A+L    +  R ++ + ++ L     Q+E    ++        
Sbjct: 242 EHSAGDEHRLQLATNALADL----DRRRNDLTDKIAQLEEREKQEEMVKKLEKVAVYSKG 297

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
               Q    +K E A+     + +      
Sbjct: 298 IFLKQETERIKAEVAQLNAASKDLAEERET 327


>gi|297183138|gb|ADI19281.1| ATPase involved in DNA repair [uncultured delta proteobacterium
           HF0200_39L23]
          Length = 564

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 8/109 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L + F    +I  G+ G GK+ +++AI  L   RG R +    + R
Sbjct: 2   LIHLKIRNFATIKELEVDFGPGFSILTGETGAGKSILIDAIMLLRGERG-RTS----LVR 56

Query: 67  IGSP-SFFSTFARVEGMEGLADI--SIKLETRDDRSVRCLQINDVVIRV 112
            G   S       +E  EG   I     +E  D+  +RCL  N   +R 
Sbjct: 57  SGEDQSEVEAVLSLERAEGTCQILEESGIEVEDEMIIRCLLSNQGRLRR 105


>gi|262382196|ref|ZP_06075334.1| pgaA protein [Bacteroides sp. 2_1_33B]
 gi|262297373|gb|EEY85303.1| pgaA protein [Bacteroides sp. 2_1_33B]
          Length = 432

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
          K + +  FR Y  L +   ++  + VGDN  GKT++L A
Sbjct: 2  KEIRLENFRCYTELSIPLKSRVNLLVGDNATGKTSVLRA 40


>gi|169796401|ref|YP_001714194.1| endonuclease [Acinetobacter baumannii AYE]
 gi|169149328|emb|CAM87212.1| hypothetical protein; putative endonuclease [Acinetobacter
           baumannii AYE]
          Length = 597

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 59/376 (15%), Positives = 119/376 (31%), Gaps = 63/376 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           + +K L I  FRN+ S+ +       + +G+N  GK+N++ A+  +   +     R+   
Sbjct: 1   MHLKNLKIRNFRNFESIDIPLSDNI-VLLGENRTGKSNLIFAMRLVIDQNLSDSARQLKL 59

Query: 62  ADVTRIGSPSFFS---TFARVEGMEGLADISIKLETRDDR------SVRCLQINDVVIRV 112
           +D         F+       ++  +   D  +     D R      +VR   I       
Sbjct: 60  SDF--WDGCDLFTKPQIEVHLDFTDFENDPDLTALLTDYRLASDPHTVRLSYI------- 110

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG-RNR 171
                +   +       + +  G  +E +   +++   I       + D E  +   RN 
Sbjct: 111 FRCKAECTGLPTSSEDFEFLIYGGDVEEKPINNQVRRRISLDLLDALRDAENQLGSWRNS 170

Query: 172 LLT------EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
            L           DS+  ++I A +     KI              I       +   + 
Sbjct: 171 PLRPLIENAMRAIDSTTLTTISADLEAANKKIVE---------QPQIKVLDSSLSKQILS 221

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           LS      GK      +L+   A  L   R                 L +   +   +I 
Sbjct: 222 LS------GKGHDLKPSLRFSNADPLRLFRS----------------LGMYIDEGKRSIN 259

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIV--TDIG 342
             S G   V+L+ + L               +L ++E  AHL    + ++F+ +      
Sbjct: 260 EASLGSANVILMALKLEEFSWRKEKNERNYSLLCIEEPEAHLHPQLQRSVFKNIFNEKDS 319

Query: 343 SQIFMTGTDKSVFDSL 358
           +Q  +  +      ++
Sbjct: 320 AQALIITSHSPTLAAV 335


>gi|49481917|gb|AAT66670.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A7]
          Length = 573

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 102/324 (31%), Gaps = 46/324 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + F+   T+  G+ G GK+ I++AI  L  GRG       +  R
Sbjct: 2   LAELSIKNFAIIESLSVSFEKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SVEFVR 56

Query: 67  IGSPSFFSTFARV-------------EGMEGLADISIKLETRDDRSVRCL-QINDVVI-- 110
            G          +             E    +++  I L      + + + ++N  ++  
Sbjct: 57  YGEEKAEIEGLFLLDDETHPCYGKCAEVGIDISEGMIVLRREIFATGKSVCRVNGKLVTT 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            V+ E+   L           +            F    +      +R     +E+L + 
Sbjct: 117 AVLREIGSTLVDIHGQHEHQELMDPSRHLPLLDEFGGAEIAEALAEYRAVYEKYEQLRKK 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSSLIMEYVQ 217
             +L       +     +  Q+ E+           ++   +V+++N   +   +    +
Sbjct: 177 LKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYEALKHSYE 236

Query: 218 KENFPHIKLSLTG----------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
             +     L   G           +D    +++  +   Y        K+     +    
Sbjct: 237 ALSGEQRGLDWIGLAMSHLDDVASIDPALKEAYETIANSYYLLEDITYKLRDELEQLEYD 296

Query: 268 PHRSDLIVDYC--DKAITIAHGST 289
           P+R D I         +   +GST
Sbjct: 297 PYRLDFIESRLSEINQLKRKYGST 320


>gi|46198851|ref|YP_004518.1| chromosome partition protein smc [Thermus thermophilus HB27]
 gi|46196474|gb|AAS80891.1| chromosome partition protein smc [Thermus thermophilus HB27]
          Length = 1008

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 6   KIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           ++  L +  F+++A   L  F    T  +G NG GK+N++EAI F++  R    R     
Sbjct: 6   RLDRLVLQGFKSFADRTLLDFPDPVTGIIGPNGSGKSNLVEAIRFVTGSRAQDLRGEELK 65

Query: 63  DVTRIGS---PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            +   G+   P       R+E   G   + ++     DRS   L++N   
Sbjct: 66  ALLFHGAKTRPPQGVAEVRLELSRGRERLVVERRIEGDRS--QLRVNGRP 113


>gi|302380382|ref|ZP_07268852.1| chromosome segregation protein SMC [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233781|ref|ZP_07320435.1| chromosome segregation protein SMC [Finegoldia magna BVS033A4]
 gi|302311872|gb|EFK93883.1| chromosome segregation protein SMC [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495215|gb|EFL54967.1| chromosome segregation protein SMC [Finegoldia magna BVS033A4]
          Length = 1167

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 99/283 (34%), Gaps = 36/283 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++   ++L FD   T  VG NG GK+NI +AI   L     +  R   
Sbjct: 1   MGLKSVEIQGFKSFKDKIKLNFDNPITAIVGPNGSGKSNISDAILWVLGEQSAKNLRGNK 60

Query: 61  YADVTRIG-SPSFFSTFARV---------EGMEGLADISIKLETRDDRSVRCLQINDVVI 110
             DV   G        FA+V         + ++       +   R   S   +  N V +
Sbjct: 61  MQDVIFAGTQKEKAVNFAQVSITFENDLWKDIDYQEITVTRRVFRTGESEYYINKNQVRL 120

Query: 111 RVVDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
           + V EL       K          +D I S  S +RR   +        ++ +      +
Sbjct: 121 KDVKELFLNTGIGKEGYSVIGQGKIDEILSSKSEDRRELFEEASGISKQKYIKEQS--VK 178

Query: 165 LMRGRNRLLTEG----YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
            +   N  L                +E + ++        +  ++      +       +
Sbjct: 179 KLEQTNENLLRIEDILVSQIDRLKYLEKESSK------AKKGMVLEEQLKEMEIQKAILD 232

Query: 221 FPHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFDGRKMDSMS 261
              + ++L+  +D K   DQS   +K +  +  ++ ++ + + 
Sbjct: 233 IEKLSITLSDVIDKKEINDQSLIEIKSKLVE--YENKRNELLE 273


>gi|157149943|ref|YP_001450000.1| DNA repair protein RecN [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157074737|gb|ABV09420.1| DNA repair protein RecN [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 552

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 70/207 (33%), Gaps = 23/207 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L FD   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLHFDQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGS-------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+              S        +G+E   ++ I+ E          ++N  ++ + 
Sbjct: 57  HGATKAEIEGLFSLENSSALEAIFEEQGLELTDELIIRREI-LQNGRSVSRVNGQLVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+               F D    A+   ++     + +L +  
Sbjct: 116 VLKAIGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDEDFVALKAFYQETFDHYRQLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVK 196
             L        +    +E QMAE+   
Sbjct: 176 LTLHKNQEEHKARIEMLEFQMAEIDSA 202


>gi|160934420|ref|ZP_02081807.1| hypothetical protein CLOLEP_03293 [Clostridium leptum DSM 753]
 gi|156867093|gb|EDO60465.1| hypothetical protein CLOLEP_03293 [Clostridium leptum DSM 753]
          Length = 1190

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 104/301 (34%), Gaps = 40/301 (13%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+ +     L F    T  VG NG GK+NI +AI ++      +  R + 
Sbjct: 1   MLLKSLKLQGFKTFPDQTKLSFGPGITAVVGPNGSGKSNISDAIRWVLGEQSCKTLRCSR 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+P+     +      ++  +         + +  R  RS      IN  V+R
Sbjct: 61  MEDVIFNGTPARKSQGYAQVTLTIDNRDRRLPFGEDEVAITRRYYRSGDSEYLINKAVVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          +D I +  S +RR   +        R+R R  + E
Sbjct: 121 LKDIHELFMDTGLGRDGYSIIGQGKIDSIVASRSEDRREIFEEAAG--ISRYRYRKGEAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +            + +    +   ++EL      ARV  +   +    +Y+       
Sbjct: 179 KRLNQ---------TEENLLR-LRDILSEL-----EARVGPLEEQAKKAKDYLA--YADE 221

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            ++   G      ++S   L+E+  K L    + + +  +      R + I    +    
Sbjct: 222 KRVLEIGLWLNTLEKSGKVLREQEDKILVARNQDEEVENQIQEIQAREETIFLEMNSHAA 281

Query: 284 I 284
            
Sbjct: 282 K 282


>gi|118781930|ref|XP_311953.3| AGAP002947-PA [Anopheles gambiae str. PEST]
 gi|116129328|gb|EAA07609.3| AGAP002947-PA [Anopheles gambiae str. PEST]
          Length = 1244

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 9/122 (7%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++ + +  F++Y     +    + +  +G NG GK+N ++AISF+        R     +
Sbjct: 10  LQCIEVENFKSYRGRTTIGPLKRFSAVIGPNGSGKSNFMDAISFVMGEKTSSLRVRKLTE 69

Query: 64  VT------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           +       R  S         +   E   ++    +     +    +IN  V+     L 
Sbjct: 70  LINGASIGRPISNRASVMARFIIKTEAEGEVEKTFQRSVINASSEYRINGSVVSPQHYLA 129

Query: 118 KH 119
           + 
Sbjct: 130 EL 131


>gi|290771148|emb|CAY80706.2| Smc3p [Saccharomyces cerevisiae EC1118]
          Length = 1230

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 98/303 (32%), Gaps = 26/303 (8%)

Query: 79   VEGMEGLADISIKLETRDDRSVRCLQINDVV-IRVVDELNKHLRISWLVPSM------DR 131
            +E       + +K      +SV    I     +   +EL + +R   L+P          
Sbjct: 912  LEKANNQQRLLLKKLDNFQKSVEKTMIKKTTLVTRREELQQRIREIGLLPEDALVNDFSD 971

Query: 132  IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
            I S   ++R   ++  +  +   ++R   +F++    R  L            SI+  + 
Sbjct: 972  ITSDQLLQRLNDMNTEISGLKNVNKRAFENFKKFNERRKDLAERASELDESKDSIQDLIV 1031

Query: 192  ELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            +L  +   A       +S       ++       KL +    D   D       +  A+ 
Sbjct: 1032 KLKQQKVNAVDSTFQKVSENFEAVFERLVPRGTAKLIIHRKNDNANDHDESIDVDMDAES 1091

Query: 251  LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST--GEQKVV-LVGIFLAHARLI 307
                   DS    T +        V +  K     H     G QK V  + + LA     
Sbjct: 1092 NESQNGKDSEIMYTGVSIS-----VSFNSKQNEQLHVEQLSGGQKTVCAIALILA----- 1141

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFM 365
                  A   L DEI A LD+  R A+  ++ ++   +Q   T       D L    KF 
Sbjct: 1142 IQMVDPASFYLFDEIDAALDKQYRTAVATLLKELSKNAQFICTT---FRTDMLQVADKFF 1198

Query: 366  RIS 368
            R+ 
Sbjct: 1199 RVK 1201



 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60
           + IK + I  F+ Y +  +   F     + +G NG GK+N   AI F+        +R  
Sbjct: 1   MYIKRVIIKGFKTYRNETIIDNFSPHQNVIIGSNGSGKSNFFAAIRFVLSDDYSNLKREE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR-DDRSVRCLQINDVVIRVVDELNKH 119
              +   GS       A VE +    D S+ L +    R    + I   V    D+   +
Sbjct: 61  RQGLIHQGS-GGSVMSASVEIVFHDPDHSMILPSGVLSRGDDEVTIRRTVGLKKDDYQLN 119

Query: 120 LRIS 123
            R  
Sbjct: 120 DRNV 123


>gi|242309536|ref|ZP_04808691.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239524107|gb|EEQ63973.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 320

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 28/167 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--- 61
           + ++F+ I  FR+   L +    +  +F+G    GKT++LEAI         R       
Sbjct: 1   MMLEFIQIQNFRSIEKLTIEGFRKLNVFIGQANTGKTSVLEAIYIC-----LRENPDSLS 55

Query: 62  -----ADVTRIGSPSFFSTFARVEGMEG------LADISIK--------LETRDDRSVRC 102
                 D+ R     F   F   +           A++ I+         E R+  S   
Sbjct: 56  ALLKIRDMERREVGQFDGLFYNYDINRTIKLLSPKANVEIQYKDGADNPKEIREMDSYLE 115

Query: 103 LQINDVVIRVV-DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
           + I   ++++  D +   +R  +   +     S +   R + L+  +
Sbjct: 116 MNIGGKIVKLYGDHIWNVVRNRFFPKNSVDFISFIPSFREKTLENNL 162


>gi|169826092|ref|YP_001696250.1| ATP binding protein [Lysinibacillus sphaericus C3-41]
 gi|168990580|gb|ACA38120.1| ATP binding protein [Lysinibacillus sphaericus C3-41]
          Length = 590

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
           +I  +   E++ +    + F+ + T+ VG N  GKT+IL+AIS 
Sbjct: 138 RINSIKFEEYKCFKDEEITFEERITVLVGKNASGKTSILDAISV 181


>gi|227537679|ref|ZP_03967728.1| SMC domain protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242293|gb|EEI92308.1| SMC domain protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 656

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 27/46 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + + ++ +  ++   ++   FD +  I +G+NG GK+ I++AI  L
Sbjct: 15 MYLAYIKVENYKGIEAIETEFDPKLNIIIGENGCGKSAIIDAIRLL 60


>gi|229543907|ref|ZP_04432966.1| DNA repair protein RecN [Bacillus coagulans 36D1]
 gi|229325046|gb|EEN90722.1| DNA repair protein RecN [Bacillus coagulans 36D1]
          Length = 567

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 18/117 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I  F    +L L F+A  T+  G+ G GK+ I++AI  L+ GRG      ++  R
Sbjct: 2   LQELSIKNFAIIDALTLSFEAGLTVLTGETGAGKSIIIDAIQLLTGGRG-----SSEFVR 56

Query: 67  IGSP--SFFSTFARVEG---MEGLADISIKLE-------TRDDRSVRCL-QINDVVI 110
            G         F   +G   M+   +  I++E           ++ + + +IN  ++
Sbjct: 57  HGENRAEIEGLFLVEDGHPCMDRAREFGIEIEEGMVILRRDISKTGKSVCRINGKLV 113


>gi|27227572|emb|CAD59403.1| SMC1 protein [Anopheles gambiae]
          Length = 1229

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 9/122 (7%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++ + +  F++Y     +    + +  +G NG GK+N ++AISF+        R     +
Sbjct: 10  LQCIEVENFKSYRGRTTIGPLKRFSAVIGPNGSGKSNFMDAISFVMGEKTSSLRVRKLTE 69

Query: 64  VT------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           +       R  S         +   E   ++    +     +    +IN  V+     L 
Sbjct: 70  LINGASIGRPISNRASVMARFIIKTEAEGEVEKTFQRSVINASSEYRINGSVVSPQHYLA 129

Query: 118 KH 119
           + 
Sbjct: 130 EL 131


>gi|49481903|gb|AAT66663.1| DNA repair and genetic recombination protein [Geobacillus
           stearothermophilus]
          Length = 573

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 50/329 (15%), Positives = 103/329 (31%), Gaps = 56/329 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + F+   T+  G+ G GK+ I++AI  L  GRG       +  R
Sbjct: 2   LAELSIKNFAIIESLSVSFEKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SVEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G        A +EG+           +  A++ I +                   ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLDDETHPCYDKCAEVGIDISEGMIVLRREIFATGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFE 163
            ++   V+ E+   L           +            F    +      +R     +E
Sbjct: 112 KLVTTAVLREIGSTLVDIHGQHEHQELMDPSRHLPLLDEFGGAEIAEALAEYRAVYEKYE 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSSLI 212
           +L +   +L       +     +  Q+ E+           ++   +V+++N   +   +
Sbjct: 172 QLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIVNFQKIYEAL 231

Query: 213 MEYVQKENFPHIKLSLTG----------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
               +  +     L   G           +D    +++  +   Y        K+     
Sbjct: 232 KHSYEALSGEQRGLDWIGLAMSHLDDVASIDPALKEAYETIANSYYLLEDITYKLRDELE 291

Query: 263 RTLIGPHRSDLIVDYC--DKAITIAHGST 289
           +    P+R D I         +   +GST
Sbjct: 292 QLEYDPYRLDFIESRLSEINQLKRKYGST 320


>gi|162455827|ref|YP_001618194.1| hypothetical protein sce7545 [Sorangium cellulosum 'So ce 56']
 gi|161166409|emb|CAN97714.1| hypothetical protein sce7545 [Sorangium cellulosum 'So ce 56']
          Length = 409

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +  + +  F+++A   +      T+ +G NG GK+N L+A+ FL
Sbjct: 2  LTSIRLRNFKSFADQTVELSP-FTLLLGANGSGKSNFLDALRFL 44


>gi|146077792|ref|XP_001463342.1| structural maintenance of chromosome 3 protein [Leishmania infantum
           JPCM5]
 gi|134067427|emb|CAM65700.1| putative adaptor complex protein (AP) 3 delta subunit 1 [Leishmania
           infantum JPCM5]
          Length = 1198

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 14/124 (11%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRAS 60
           + IK + IS FR+Y           +  + VG NG GK+N   AI F+   +    R A 
Sbjct: 1   MFIKNIIISGFRSYREQSFPDGLSPKTNVIVGKNGSGKSNFFAAIQFVLNEKFANLRAAE 60

Query: 61  YADVTRIGSPS----------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
             ++  +GS            F ++  R+       +  +++           ++ND   
Sbjct: 61  RKELFHVGSGRPALSVFVEIVFDNSDGRLVIPGRAEEPEVRIRRTIGLKQDEFRVNDRKF 120

Query: 111 RVVD 114
              D
Sbjct: 121 SASD 124



 Score = 36.4 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 69/214 (32%), Gaps = 16/214 (7%)

Query: 155  HRRRMIDFERLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
            H +   +  + +   NR   + Y         + +Q   L  +++    E++  L +   
Sbjct: 963  HLKAANEKLKALSHVNRKAVDQYATLQEAMKDLTSQQETLAKELDSI-HELMEHLDAKKE 1021

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
            E +++     ++               C+ + +        +K D  +        R  +
Sbjct: 1022 EAIERTYK-QVQYQFEEVFKQLVGVESCSAELQLVASAAPNKKEDPYTG------ARIKV 1074

Query: 274  IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
                 +    +   S G++ +V + +  A           AP  L DEI A LD + R +
Sbjct: 1075 SFGLGNPVSHLDQLSGGQKSLVALALIFA-----IQRCDPAPFYLFDEIDAALDAEYRTS 1129

Query: 334  LFRIV--TDIGSQIFMTGTDKSVFDSLNETAKFM 365
            +  ++       Q  +      + D  ++     
Sbjct: 1130 VANMMARQSGECQFLVATFKTELLDVADKVLGIF 1163


>gi|169783320|ref|XP_001826122.1| structural maintenance of chromosomes protein 4 [Aspergillus oryzae
           RIB40]
 gi|83774866|dbj|BAE64989.1| unnamed protein product [Aspergillus oryzae]
          Length = 1433

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +R+ IK L ++ F++YA  ++   F A  +  VG NG GK+N+++A+ F+    GFR + 
Sbjct: 227 SRMVIKTLILNNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDALLFVF---GFRASK 283

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                   +    +      F  VE      
Sbjct: 284 MRQGKISALIHNSADFPDLPFCEVEVHFQEV 314


>gi|290580117|ref|YP_003484509.1| putative chromosome segregation ATPase [Streptococcus mutans
           NN2025]
 gi|254997016|dbj|BAH87617.1| putative chromosome segregation ATPase [Streptococcus mutans
           NN2025]
          Length = 1178

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++ FD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MFLKEIEMQGFKSFADKTKVEFDRGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGME---GLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++      ++  +     A   I++E    R+      I+   +R
Sbjct: 61  MPDVIFAGTEKRKPLNYAQVTVILDNSDAFIKDAQEEIRIERHIYRNGDSDYLIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    ERR   +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEEIFNSKPEERRSIFE 162


>gi|197286281|ref|YP_002152153.1| plasmid-related protein [Proteus mirabilis HI4320]
 gi|194683768|emb|CAR44814.1| putative plasmid-related protein [Proteus mirabilis HI4320]
          Length = 654

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + I+ +N+  FR++      +  D   T  VG NG GKT +++A+
Sbjct: 1  MHIERINLQNFRSFGPEGQSIAVDPDLTTLVGANGAGKTVLMQAL 45


>gi|49481991|gb|AAT66707.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
          W9A64]
          Length = 573

 Score = 54.5 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL + F+   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2  LAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G        A +EG+
Sbjct: 57 YGEDK-----AEIEGL 67


>gi|224089430|ref|XP_002188956.1| PREDICTED: structural maintenance of chromosomes 2 [Taeniopygia
           guttata]
          Length = 1217

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 5   IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA       FD       G NG GK+NIL++I F   +S     R +
Sbjct: 1   MYIKSIVLEGFKSYAQRTEISNFDPLFNAITGLNGSGKSNILDSICFVLGISNLSQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +I++  +       + L IN 
Sbjct: 61  NLHDLIYKSGQAGITKATVSINFDNSNKSQSPLGFEANDEITVTRQVVVGGKSKYL-ING 119

Query: 108 VVI 110
           V  
Sbjct: 120 VNA 122


>gi|190409425|gb|EDV12690.1| structural maintenance of chromosome 3 [Saccharomyces cerevisiae
            RM11-1a]
          Length = 1230

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 98/303 (32%), Gaps = 26/303 (8%)

Query: 79   VEGMEGLADISIKLETRDDRSVRCLQINDVV-IRVVDELNKHLRISWLVPSM------DR 131
            +E       + +K      +SV    I     +   +EL + +R   L+P          
Sbjct: 912  LEKANNQQRLLLKKLDNFQKSVEKTMIKKTTLVTRREELQQRIREIGLLPEDALVNDFSD 971

Query: 132  IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
            I S   ++R   ++  +  +   ++R   +F++    R  L            SI+  + 
Sbjct: 972  ITSDQLLQRLNDMNTEISGLKNVNKRAFENFKKFNERRKDLAERASELDESKDSIQDLIV 1031

Query: 192  ELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            +L  +   A       +S       ++       KL +    D   D       +  A+ 
Sbjct: 1032 KLKQQKVNAVDSTFQKVSENFEAVFERLVPRGTAKLIIHRKNDNANDHDESIDVDMDAES 1091

Query: 251  LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST--GEQKVV-LVGIFLAHARLI 307
                   DS    T +        V +  K     H     G QK V  + + LA     
Sbjct: 1092 NESQNGKDSEIMYTGVSIS-----VSFNSKQNEQLHVEQLSGGQKTVCAIALILA----- 1141

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFM 365
                  A   L DEI A LD+  R A+  ++ ++   +Q   T       D L    KF 
Sbjct: 1142 IQMVDPASFYLFDEIDAALDKQYRTAVATLLKELSKNAQFICTT---FRTDMLQVADKFF 1198

Query: 366  RIS 368
            R+ 
Sbjct: 1199 RVK 1201



 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60
           + IK + I  F+ Y +  +   F     + +G NG GK+N   AI F+        +R  
Sbjct: 1   MYIKRVIIKGFKTYRNETIIDNFSPHQNVIIGSNGSGKSNFFAAIRFVLSDDYSNLKREE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR-DDRSVRCLQINDVVIRVVDELNKH 119
              +   GS       A VE +    D S+ L +    R    + I   V    D+   +
Sbjct: 61  RQGLIHQGS-GGSVMSASVEIVFHDPDHSMILPSGVLSRGDDEVTIRRTVGLKKDDYQLN 119

Query: 120 LRIS 123
            R  
Sbjct: 120 DRNV 123


>gi|119512656|ref|ZP_01631730.1| chromosome segregation protein [Nodularia spumigena CCY9414]
 gi|119462671|gb|EAW43634.1| chromosome segregation protein [Nodularia spumigena CCY9414]
          Length = 1206

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + +K + ++ F+++  +  +      T+  G NG GK+NIL+A+ F   LS  +G R   
Sbjct: 2  VHVKRVELTNFKSFGGTTSVPLLPGFTVISGPNGSGKSNILDALLFCLGLSSSKGMRADR 61

Query: 61 YADVTRIGSPS 71
            D+      S
Sbjct: 62 LPDLVNNNQTS 72


>gi|78222390|ref|YP_384137.1| condensin subunit Smc [Geobacter metallireducens GS-15]
 gi|78193645|gb|ABB31412.1| condensin subunit Smc [Geobacter metallireducens GS-15]
          Length = 1176

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +KIK L+IS F+++   + L F    T  VG NG GK+N+++AI ++      +  R  S
Sbjct: 1  MKIKRLDISGFKSFVDKVSLDFQQGITSIVGPNGCGKSNVVDAIRWVMGEQSAKNLRGKS 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFGGSES 71


>gi|6322387|ref|NP_012461.1| Smc3p [Saccharomyces cerevisiae S288c]
 gi|1352989|sp|P47037|SMC3_YEAST RecName: Full=Structural maintenance of chromosomes protein 3;
            AltName: Full=DA-box protein SMC3
 gi|895899|emb|CAA61313.1| hypothetical protein [Saccharomyces cerevisiae]
 gi|1008231|emb|CAA89366.1| SMC3 [Saccharomyces cerevisiae]
 gi|2570100|emb|CAA74655.1| Smc3 [Saccharomyces cerevisiae]
 gi|285812827|tpg|DAA08725.1| TPA: Smc3p [Saccharomyces cerevisiae S288c]
          Length = 1230

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 98/303 (32%), Gaps = 26/303 (8%)

Query: 79   VEGMEGLADISIKLETRDDRSVRCLQINDVV-IRVVDELNKHLRISWLVPSM------DR 131
            +E       + +K      +SV    I     +   +EL + +R   L+P          
Sbjct: 912  LEKANNQQRLLLKKLDNFQKSVEKTMIKKTTLVTRREELQQRIREIGLLPEDALVNDFSD 971

Query: 132  IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
            I S   ++R   ++  +  +   ++R   +F++    R  L            SI+  + 
Sbjct: 972  ITSDQLLQRLNDMNTEISGLKNVNKRAFENFKKFNERRKDLAERASELDESKDSIQDLIV 1031

Query: 192  ELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            +L  +   A       +S       ++       KL +    D   D       +  A+ 
Sbjct: 1032 KLKQQKVNAVDSTFQKVSENFEAVFERLVPRGTAKLIIHRKNDNANDHDESIDVDMDAES 1091

Query: 251  LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST--GEQKVV-LVGIFLAHARLI 307
                   DS    T +        V +  K     H     G QK V  + + LA     
Sbjct: 1092 NESQNGKDSEIMYTGVSIS-----VSFNSKQNEQLHVEQLSGGQKTVCAIALILA----- 1141

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFM 365
                  A   L DEI A LD+  R A+  ++ ++   +Q   T       D L    KF 
Sbjct: 1142 IQMVDPASFYLFDEIDAALDKQYRTAVATLLKELSKNAQFICTT---FRTDMLQVADKFF 1198

Query: 366  RIS 368
            R+ 
Sbjct: 1199 RVK 1201



 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60
           + IK + I  F+ Y +  +   F     + +G NG GK+N   AI F+        +R  
Sbjct: 1   MYIKRVIIKGFKTYRNETIIDNFSPHQNVIIGSNGSGKSNFFAAIRFVLSDDYSNLKREE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR-DDRSVRCLQINDVVIRVVDELNKH 119
              +   GS       A VE +    D S+ L +    R    + I   V    D+   +
Sbjct: 61  RQGLIHQGS-GGSVMSASVEIVFHDPDHSMILPSGVLSRGDDEVTIRRTVGLKKDDYQLN 119

Query: 120 LRIS 123
            R  
Sbjct: 120 DRNV 123


>gi|238798384|ref|ZP_04641866.1| hypothetical protein ymoll0001_19630 [Yersinia mollaretii ATCC
          43969]
 gi|238717769|gb|EEQ09603.1| hypothetical protein ymoll0001_19630 [Yersinia mollaretii ATCC
          43969]
          Length = 575

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++ L I  FR+   L           +G    GK+ IL+AI      R
Sbjct: 4  VRHLEIENFRSIKKLVWCPSPGLNCLIGTGDSGKSTILDAIDLCLGAR 51



 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
           + +    +    TG  ++++ G        I   T  + +L++DE    L+  +   L  
Sbjct: 247 HNNNDTPLRQLGTGSSRLLISG--------IQKATSRSTMLIVDEAEYGLEPYRITRLLH 298

Query: 337 IVTDIGS----QIFMTGTDKSVFDSLNET 361
            +    +    Q+F+T     V   L   
Sbjct: 299 ELGSKDTEPTKQVFITTHSPHVLRELQAN 327


>gi|254166847|ref|ZP_04873701.1| hypothetical protein ABOONEI_1939 [Aciduliprofundum boonei T469]
 gi|289596530|ref|YP_003483226.1| SMC domain protein [Aciduliprofundum boonei T469]
 gi|197624457|gb|EDY37018.1| hypothetical protein ABOONEI_1939 [Aciduliprofundum boonei T469]
 gi|289534317|gb|ADD08664.1| SMC domain protein [Aciduliprofundum boonei T469]
          Length = 802

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 13/104 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ +++   R+Y    +      T+F GD G GKT IL AI F   G           
Sbjct: 1   MIIRKIHLHNIRSYEDQDIELGKGITLFEGDIGSGKTTILMAIDFALFGNS--------- 51

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
               +P F+ +  R     G  +I  +   ++ +  R L+    
Sbjct: 52  ----TPDFYRSLLRKGTNRGFVEIIFEHGGKEYKIRRVLEAKGK 91


>gi|159116977|ref|XP_001708709.1| Hypothetical protein, similar to SMC2 [Giardia lamblia ATCC
          50803]
 gi|157436822|gb|EDO81035.1| hypothetical protein, similar to SMC2 [Giardia lamblia ATCC
          50803]
          Length = 1576

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
          + I+ + +  F++YA+      FD   T   G NG GK+N+L+AI F+         R  
Sbjct: 1  MYIQEIILDGFKSYATQTRIGPFDPSFTAITGLNGTGKSNVLDAICFVLGISSLSRIRVT 60

Query: 60 SYADVT-RIGSPSFFSTFARV 79
          S  ++  + G        A +
Sbjct: 61 SLTELIYKQGQAGITKASATL 81


>gi|218514291|ref|ZP_03511131.1| hypothetical protein Retl8_11591 [Rhizobium etli 8C-3]
          Length = 236

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          ++I  + I  FRN   +   FD     T+ +G NG GK+N++EAI
Sbjct: 1  MRIDRVYIDGFRNLQDVAADFDEGCLTTVIIGQNGAGKSNLIEAI 45


>gi|126444278|ref|YP_001061044.1| hypothetical protein BURPS668_A0038 [Burkholderia pseudomallei 668]
 gi|126223769|gb|ABN87274.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
          Length = 594

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 62/355 (17%), Positives = 118/355 (33%), Gaps = 60/355 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           + I  ++IS F N+ +L +       + VG+N  GK+N ++A+   L PG   R      
Sbjct: 1   MHISRISISNFANFKALDVETTESI-VIVGENKAGKSNFIQALQLVLDPGLSER---DRQ 56

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +   G   F+        +    +I+I+L   DD +       D+V  +VD L       
Sbjct: 57  L---GLEQFWDGLGE-NKLGATVEIAIELTDFDDDA-------DLVASLVDCLVDV---- 101

Query: 124 WLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFERLM----RGRNRLLTEG 176
                      G     R   RF  +      P     + D+E ++       N +    
Sbjct: 102 -----------GPPTVARLTYRFRPKASLGGAPP--LSLADYEYVIFGGDDEDNAIAAMQ 148

Query: 177 YFDSSWCSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSLT-GFLD 233
                    ++ Q A    +  ++  R   +  L   +   +  E    I+  ++    D
Sbjct: 149 RRQLP----LDVQAALRDAEKDLSSWRRSPLRPLIEELTFDLDAEAREEIQQMVSEAQTD 204

Query: 234 GKFDQSFCALKEEYAKKLF----DGRKMDSMSRRTLIGPHRSD-----LIVDYCDKAITI 284
                   +  E    +L     +   +        + P R D     L +   + A  I
Sbjct: 205 LADRDEVVSTAERIGARLLAIVGNKHTVPIKLG---LAPARVDVLLRSLRILIDNGARGI 261

Query: 285 AHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
              S G   ++ + +  L   RL+ +         ++E  AHL    +  ++R  
Sbjct: 262 GDASLGTANLLFLALKSLELDRLVVDGERSHTFFAIEEPEAHLHPHVQRLVYRYF 316


>gi|19112841|ref|NP_596049.1| mitotic cohesin complex subunit Psm1 [Schizosaccharomyces pombe
          972h-]
 gi|27734444|sp|O94383|SMC1_SCHPO RecName: Full=Structural maintenance of chromosomes protein 1;
          AltName: Full=Chromosome segregation protein smc1;
          AltName: Full=Cohesin complex subunit psm1
 gi|4007792|emb|CAA22432.1| mitotic cohesin complex subunit Psm1 [Schizosaccharomyces pombe]
          Length = 1233

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          ++  L +  F++Y     +      T  +G NG GK+N+++AISF+   +    R  +  
Sbjct: 3  RLLRLEVENFKSYRGHQIIGPFEDFTSIIGPNGAGKSNLMDAISFVLGVKSSHLRSTNVK 62

Query: 63 DVTRIG 68
          ++   G
Sbjct: 63 ELIYRG 68


>gi|239614684|gb|EEQ91671.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
          Length = 1219

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 74/261 (28%), Gaps = 30/261 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +++F  Y S       +  + +G NG GK+ +      L      R    A+  +
Sbjct: 127 IVRVKLTDFVTYTSAEFFPGPRLNMVIGPNGTGKSTL-----HLG-----RAKDPAEFVK 176

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKHLRISW 124
            G           +G+    +  I+       +     IN          EL K   I  
Sbjct: 177 HGCEEAIIEIELAKGINHRENPVIRRTIVRKGNKSTFAINGKPSSKASVLELAKSFSIQI 236

Query: 125 -----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF- 178
                 +P                      A  P       +  + +R   + L      
Sbjct: 237 DNLCQFLPQDKVAEFAALSPIELLHSTQRAAAGPEMLE-WHENLKTLRAEQKKLQAANAG 295

Query: 179 DSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK- 235
           +    +++E   +M    V+  + R      +   I    +    P  + ++  F + + 
Sbjct: 296 EREQLANLESRQEMQREDVERLLQR----ARIQKKIALLERSRPVPRYQEAVQSFREAQH 351

Query: 236 ----FDQSFCALKEEYAKKLF 252
                 Q    L+ + A  L 
Sbjct: 352 KRRNLQQEHGDLENQLAPALK 372


>gi|110743857|dbj|BAE99763.1| structural maintenance of chromosomes (SMC) - like protein
           [Arabidopsis thaliana]
          Length = 332

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/151 (24%), Positives = 57/151 (37%), Gaps = 17/151 (11%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           KI  L +  F++Y     +      T  +G NG GK+N+++AISF+   R    R +   
Sbjct: 10  KILQLEMENFKSYKGHQLVGPFKDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGSQLK 69

Query: 63  DVT-----RIGSPSFFSTFARV-----EGMEGLADISI----KLETRDDRSVRCLQINDV 108
           D+      R         F R+     +G+E     SI      E R D  V  L   + 
Sbjct: 70  DLIYAFDDRDKEQRGRKAFVRLVYQMDDGVELRFTRSITSAGGSEYRIDNRVVNLDEYNG 129

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSME 139
            +R +  L K          ++ I S    E
Sbjct: 130 KLRSLGILVKARNFLVFQGDVESIASKNPKE 160


>gi|56708870|ref|YP_164913.1| hypothetical protein SPOA0082 [Ruegeria pomeroyi DSS-3]
 gi|56680555|gb|AAV97220.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
          Length = 613

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 56/380 (14%), Positives = 116/380 (30%), Gaps = 37/380 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +S  R   +  +    +H++ VG N  GKT I+EA++ L      R      +
Sbjct: 1   MHIHRLKVSGLRGIQNADITLG-KHSVLVGPNNNGKTTIVEALALLLG----RDRLVRRL 55

Query: 65  TRIG-------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN---DVVIRVVD 114
           T            S     A + G                R      +N     +    D
Sbjct: 56  TEHDFYQSRPIETSRILIIATISGFPENDPQHSPSWFAMGRGGVEKWLNPATGDLAASAD 115

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
             +  L +     +   +    +   R F+D      DP H      + ++      L  
Sbjct: 116 GEHTDLSVQIAFAARYDLQELEAETIRFFVDDEATLGDPFHDET--SYTQI--SSKTLQE 171

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINAL-SSLIMEYVQKENFPHIKLSLTGFLD 233
            G+F      + +        ++    V  +  L ++ I +  ++   P +   L     
Sbjct: 172 LGFFMVPASRTWDKW-ISFTSELFRRLVATLGGLPATAIRDARERLWEPEVGQRL----- 225

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI------VDYCDKA--ITIA 285
            +      A+ E+   +L          R  + G   + ++        + D     +  
Sbjct: 226 -EEQDGLTAIVEQANSELGKLMPSSPRLRLRITGTDSNSVLESVVPHFAHGDGPTLPSAR 284

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           HG TG   +  + + +            + +L ++E   H+   ++  L   +  +  Q 
Sbjct: 285 HG-TGLTSLQSLLLLM-QFGKARADANKSFVLAVEEPELHIQPSQQKRLVNRLNALCDQT 342

Query: 346 FMTGTDKSVFDSLNETAKFM 365
            +T     V       A + 
Sbjct: 343 IVTTHSPLVAAMFPVEATYF 362


>gi|187779518|ref|ZP_02995991.1| hypothetical protein CLOSPO_03114 [Clostridium sporogenes ATCC
           15579]
 gi|187773143|gb|EDU36945.1| hypothetical protein CLOSPO_03114 [Clostridium sporogenes ATCC
           15579]
          Length = 567

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 16/115 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI  F     L + FD    +  G+ G GK+ +++AIS++  G+ F      D+ R
Sbjct: 2   LLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGK-F----NRDLIR 56

Query: 67  IGSP-SFFSTFARVEGMEGLA----------DISIKLETRDDRSVRCLQINDVVI 110
            G   ++      +E                DI I             ++N   +
Sbjct: 57  TGENKTYVEAVFSIENESTERILKEQGIDSEDILIIARETFQYGKSIAKVNGKSV 111


>gi|186684779|ref|YP_001867975.1| DNA repair protein RecN [Nostoc punctiforme PCC 73102]
 gi|186467231|gb|ACC83032.1| DNA repair protein RecN [Nostoc punctiforme PCC 73102]
          Length = 582

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 67/206 (32%), Gaps = 24/206 (11%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I  F     L L F A   +  G+ G GK+ IL+AI     G+       + V R G+
Sbjct: 5   LRIENFALIDQLELEFGAGLNVLTGETGAGKSIILDAIDAALGGK-----VSSRVIRTGT 59

Query: 70  P--------------SFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                          + + T   ++ + E    IS ++           ++N V++    
Sbjct: 60  SRAMVEATFTSNPPLAAWLTEQEIDLLDENSVVISREITATATNIRSRSRVNGVLVNRQI 119

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERLMRGRN 170
                 R+  +      +  G S + R +LD      +     +       +++      
Sbjct: 120 MGGMRDRLVEITAQGQTVQVGQSAQVRDWLDLYGGDSLMQQRHKVATSFNTYQQAHLALE 179

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVK 196
           +  T           +  Q+ ELG  
Sbjct: 180 KRRTSERERLQQLDLLTYQVQELGAA 205


>gi|169608676|ref|XP_001797757.1| hypothetical protein SNOG_07424 [Phaeosphaeria nodorum SN15]
 gi|111063770|gb|EAT84890.1| hypothetical protein SNOG_07424 [Phaeosphaeria nodorum SN15]
          Length = 1124

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 3/114 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-- 64
           +  + +  F  Y +          + +G NG GK+ ++ AI               ++  
Sbjct: 73  LVRVKLKNFVTYTAAEFHLGPSLNMIIGPNGTGKSTLVCAICLGLGWSSEHLGRAKELGH 132

Query: 65  -TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
             + GS           G    ++  ++   R         IN         L+
Sbjct: 133 FVKNGSDEAMIEIELAAGPGMKSNPVVRRMIRKSDGKSIFWINGKNAGKNTVLS 186


>gi|307628250|gb|ADN72554.1| hypothetical protein UM146_15975 [Escherichia coli UM146]
          Length = 754

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI F+ I  FR   S+R+    + T+FVG N  GKT  +EA+   
Sbjct: 1  MKINFIEIKNFRKLKSVRIDIAEKTTLFVGANNSGKTAAMEALGHF 46


>gi|281491354|ref|YP_003353334.1| DNA repair protein RecN [Lactococcus lactis subsp. lactis KF147]
 gi|281375095|gb|ADA64613.1| DNA repair protein RecN [Lactococcus lactis subsp. lactis KF147]
          Length = 564

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 84/242 (34%), Gaps = 24/242 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I  F     + L F++  TI  G+ G GK+ I++A+S L  GR     + +D  R
Sbjct: 2   LQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGR-----ASSDFVR 56

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIR-- 111
            G+                     +E      D  I L      + R + +IN  ++   
Sbjct: 57  HGANKAEIEGLFFFDKTPELKAVLLELGFEEVDSEIILRREIFANGRSVCRINGQMVNLA 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            + ++ + L           + +  S  R    F D     I   ++ +  +F+ L +  
Sbjct: 117 TLRQVGELLVDIHGQHDSQELMNPKSHLRLLDEFGDEAFDQIKNNYKLKFENFKNLRQQL 176

Query: 170 NRLLTEGYFDSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
           N         +     +  +A+  E          +++N    L       ++     L+
Sbjct: 177 NLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDEQLVNRREKLNNIKNIADSLSSAYLA 236

Query: 228 LT 229
           L 
Sbjct: 237 LD 238


>gi|255020613|ref|ZP_05292676.1| DNA repair protein RecN [Acidithiobacillus caldus ATCC 51756]
 gi|254969998|gb|EET27497.1| DNA repair protein RecN [Acidithiobacillus caldus ATCC 51756]
          Length = 560

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 86/277 (31%), Gaps = 37/277 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F    +L L      T+  G+ G GK+ +++AI+ +   +     + AD+ R
Sbjct: 2   LTRLEIRNFALIEALELELAPGMTVVTGETGAGKSIVVDAIAQILGDK-----ASADLVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI-- 110
            G+                   + R +G++        +     R  R    IN   +  
Sbjct: 57  FGAEQAEIAASFSLTDAAPARQWLRDQGLDDDDGEGCIVRRLIPRQGRSRAFINGRQVAG 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH------RRRMIDFER 164
             + EL ++L       +   +       +R  LDR    ++         ++R    + 
Sbjct: 117 NQLRELGEYLIELLGQNAQQGLLR--PERQRALLDRF-AHLEAELDELARRQQRWRAAQA 173

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +            +  W   +  ++  +G+     R      LSS        E     
Sbjct: 174 ALEQYRSERERSGAEREWRRFVLEELERVGL-----RAGEWEELSSEARRLGAVEQLREA 228

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             +    L+ +       L  E  + L    + D+  
Sbjct: 229 VATSLSCLEDEG--GALGLLGEAQRALAGACQKDTAL 263


>gi|220905820|ref|YP_002481131.1| SMC domain-containing protein [Cyanothece sp. PCC 7425]
 gi|219862431|gb|ACL42770.1| SMC domain protein [Cyanothece sp. PCC 7425]
          Length = 430

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFL 50
          +++K L +  FR + +L L F   + T+F G NGVGK++IL+ ++ L
Sbjct: 1  MRVKSLKMQNFRGFENLTLDFSETEPTVFFGINGVGKSSILDCLAIL 47


>gi|71733832|ref|YP_273299.1| ATP binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554385|gb|AAZ33596.1| ATP binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 504

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
          +++  L +  +R +    + FD   TI +  NG GKT IL+A
Sbjct: 50 VRLDTLRMQNYRCFGEFEIDFDPHLTILIASNGGGKTTILDA 91


>gi|325697094|gb|EGD38981.1| DNA repair protein RecN [Streptococcus sanguinis SK160]
          Length = 552

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G +   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWDLTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD         +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLNLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|320164959|gb|EFW41858.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 734

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          +  L +  F+ +  + L       I VG NG GKT IL AI     G   R  S
Sbjct: 40 LHQLQLQNFKRFEDITLTLTPSPKIIVGANGSGKTQILWAILIFLRGHNARVPS 93


>gi|289679652|ref|ZP_06500542.1| hypothetical protein PsyrpsF_40517 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 590

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 117/359 (32%), Gaps = 42/359 (11%)

Query: 5   IK-IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +  +  ++I  FR+   + L      T  VG N  GK+ IL+AI  +   + F   + A+
Sbjct: 1   MHALSKIHIKNFRSCKQVILPLGD-FTPLVGQNNAGKSTILDAIRLVLAPKAF-AKTDAN 58

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI- 122
                        A V G+       I  E +   ++    IN  +   +          
Sbjct: 59  ----DQTQPIIISACVSGITEELIAQIP-EAKHQAAITPYCINGDLWIRISASGSTKPTT 113

Query: 123 -SWLVPSMDRIFSGLSMERRRF---LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
             W    +D    GL    R +   L + + A+ P          R M      L +G  
Sbjct: 114 EVWGNADIDE--QGLPTSWRSYPTGLPQAISALLPEALHI-----RAMDDVQEDLGKGKA 166

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
            S+    ++  MA     I  A  E+ +AL+++                    L  +FD 
Sbjct: 167 GSTIRGLLDEIMAP----ILTAHQEVQDALTAVRNILGSDGEN-------RSPLLNEFDT 215

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH---GSTGEQKVV 295
           S       +   L     + S+  +        DL V       T      GS G Q+ +
Sbjct: 216 SATNALSSFFPGLMLNLDVPSIDVKEFF--KSGDLNVTDEISGQTRRFDTLGS-GAQRAI 272

Query: 296 LVGIF--LAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FRIVTDIGSQIFMTG 349
            + +   LA  R   +      +LL+DE    L       L     +++  G Q+  T 
Sbjct: 273 QMALIRLLADIRKTRDQDLSRRLLLIDEPEVFLHPQGVRGLREALHVLSKSGYQVVFTT 331


>gi|156055804|ref|XP_001593826.1| hypothetical protein SS1G_05254 [Sclerotinia sclerotiorum 1980]
 gi|154703038|gb|EDO02777.1| hypothetical protein SS1G_05254 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1130

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 5/116 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA- 62
            I  + ++ F  Y S          + +G NG GK++++ A+  L  G        +   
Sbjct: 79  AIVRVKLNNFVTYESAEFFPGPNLNMVIGPNGTGKSSLVCALC-LGLGSSPKHLGRADKV 137

Query: 63  -DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
            +  + GS   F      +      +  IK     D +     IN+      + L 
Sbjct: 138 GEFVKHGSKDAFIEIELQKRSNERENHIIKTRILKDGNNCEFWINNKRASHKNVLA 193


>gi|55980868|ref|YP_144165.1| chromosome segregation SMC protein [Thermus thermophilus HB8]
 gi|55772281|dbj|BAD70722.1| chromosome segregation SMC protein [Thermus thermophilus HB8]
          Length = 1008

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 6   KIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           ++  L +  F+++A   L  F    T  +G NG GK+N++EAI F++  R    R     
Sbjct: 6   RLDRLVLQGFKSFADRTLLDFPDPVTGIIGPNGSGKSNLVEAIRFVTGSRAQDLRGEELK 65

Query: 63  DVTRIGS---PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            +   G+   P       R+E   G   + ++     DRS   L++N   
Sbjct: 66  ALLFHGAKTRPPQGVAEVRLELSRGRERLVVERRIEGDRS--QLRVNGRP 113


>gi|66362948|ref|XP_628440.1| SMC3'SMC type chromosomal ABC ATpase' [Cryptosporidium parvum
          Iowa II]
 gi|46229806|gb|EAK90624.1| SMC3'SMC type chromosomal ABC ATpase' [Cryptosporidium parvum
          Iowa II]
          Length = 1304

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK L I  F+ Y     + F       VG NG GK+NIL AI FL
Sbjct: 31 MYIKELKICGFKTYRDETTISFHPGCNCIVGLNGSGKSNILAAIQFL 77



 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 10/94 (10%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
                 ++   S G++ +V +    A  R        AP+ LLDE+ A LD+  R ++  +
Sbjct: 1184 AGNYYSLNQLSGGQKTLVALAFLFALHRA-----DPAPMYLLDEVDAALDDQYRWSVANL 1238

Query: 338  VTD--IGSQIFMTGTDKSVFDSLNETAKFMRISN 369
            +    I +Q  +T     +    +   K+ ++S 
Sbjct: 1239 IKKQSISTQFIVTTFRPQILQVAD---KYFQVSQ 1269


>gi|308162307|gb|EFO64713.1| SMC multi domain protein [Giardia lamblia P15]
          Length = 1578

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
          + I+ + +  F++YA+      FD   T   G NG GK+N+L+AI F+         R  
Sbjct: 1  MYIQEIILDGFKSYATQTRIGPFDPSFTAITGLNGTGKSNVLDAICFVLGISSLSRIRVT 60

Query: 60 SYADVT-RIGSPSFFSTFARV 79
          S  ++  + G        A +
Sbjct: 61 SLTELIYKQGQAGITKASATL 81


>gi|187476880|ref|YP_784904.1| hypothetical protein BAV0368 [Bordetella avium 197N]
 gi|115421466|emb|CAJ47972.1| conserved hypothetical phage protein [Bordetella avium 197N]
          Length = 522

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRG 55
          I+ L +  F+ + +L L FD +  I VG N  GK+++L+A+   LS  R 
Sbjct: 4  IQRLVLKNFKRFKALELEFDPELNILVGGNEAGKSSVLQAMDIVLSASRS 53


>gi|49481971|gb|AAT66697.1| DNA repair and genetic recombination protein [Geobacillus toebii]
 gi|49481981|gb|AAT66702.1| DNA repair and genetic recombination protein [Geobacillus toebii]
          Length = 573

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL + F+   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2  LAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G        A +EG+
Sbjct: 57 YGEDK-----AEIEGL 67


>gi|49481973|gb|AAT66698.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
          W9A6]
          Length = 573

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL + F+   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2  LAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G        A +EG+
Sbjct: 57 YGEDK-----AEIEGL 67


>gi|332363442|gb|EGJ41225.1| DNA repair protein RecN [Streptococcus sanguinis SK355]
          Length = 552

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 23/204 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATMDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G E   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWELTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF----AIDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD         +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGSADFLHLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL 193
             L        +    +E QMAE+
Sbjct: 176 LTLQKNQLEHKARIEMLEFQMAEI 199


>gi|238926794|ref|ZP_04658554.1| chromosome segregation protein Smc [Selenomonas flueggei ATCC
           43531]
 gi|238885326|gb|EEQ48964.1| chromosome segregation protein Smc [Selenomonas flueggei ATCC
           43531]
          Length = 1186

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/268 (18%), Positives = 93/268 (34%), Gaps = 24/268 (8%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++K L    F+++   + + FD   T  VG NG GK+NI +A+ ++      R  R   
Sbjct: 1   MQLKRLEAYGFKSFAERIVVQFDQGITAVVGPNGSGKSNITDAVRWVLGEQNIRMLRGLR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             D+   GS      S        +  +    I  +      R  R     + +ND   R
Sbjct: 61  AEDIIFAGSSARRALSVAEVILVFDNTDKTLPIDYEEVVVKRRLYRNGDSEIYLNDSRCR 120

Query: 112 VVDEL-------NKHLRISWL-VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D           H  +S +    ++ I      +RR F +         +R R  +  
Sbjct: 121 IKDIYQLFADTGIGHDGMSIIGQNRLNDILDSRPEDRRVFFEETAGITK--YRTRKQEAL 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK-ENFP 222
           R +R  +  L          ++    +++   K    R       S  +   VQ+ E+  
Sbjct: 179 RKLRDNDADLVRLSDIMHTQAAELQPLSQQAEKTKQFRALDSERRSYQLTALVQQHESLQ 238

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             + S    L    +    A++E   K+
Sbjct: 239 KEQESADRELHVHEEAEIRAMQERKEKE 266


>gi|255577566|ref|XP_002529661.1| Structural maintenance of chromosome, putative [Ricinus communis]
 gi|223530887|gb|EEF32748.1| Structural maintenance of chromosome, putative [Ricinus communis]
          Length = 1246

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 3/106 (2%)

Query: 5   IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y        F  +    VG NG GKTN   AI   LS      R+  
Sbjct: 1   MYIKQVIIEGFKSYREQIATENFSPKINCVVGANGSGKTNFFHAIRFVLSDLFQNLRSED 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                          A VE +   +D  I ++  + R  R + +  
Sbjct: 61  RHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKK 106



 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 61/204 (29%), Gaps = 12/204 (5%)

Query: 144  LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
             +  +      +++ +  +      R  L        +   + + ++ EL   ++  + E
Sbjct: 970  CNEQLQQFSHVNKKALDQYVNFTEQREELQKR----QAELDAGDEKIRELISVLDQRKDE 1025

Query: 204  MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
             I      +  + ++     ++    G       +       +        R+ D   R 
Sbjct: 1026 SIERTFKGVARHFREVFSELVQ---GGHGHLVMMKKKDGDHGDDDYDDDGPREADLEGRV 1082

Query: 264  TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
                  +  +      +  ++   S G++ VV + +  A           AP  L DEI 
Sbjct: 1083 EKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFA-----IQRCDPAPFYLFDEID 1137

Query: 324  AHLDEDKRNALFRIVTDIGSQIFM 347
            A LD   R A+            +
Sbjct: 1138 AALDPQYRTAVGIYAAGYAVSCIV 1161


>gi|239827662|ref|YP_002950286.1| DNA repair protein RecN [Geobacillus sp. WCH70]
 gi|239807955|gb|ACS25020.1| DNA repair protein RecN [Geobacillus sp. WCH70]
          Length = 573

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL + F+   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2  LAELSIKNFAIIESLSISFEKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SAEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G        A +EG+
Sbjct: 57 YGEDK-----AEIEGL 67


>gi|19552391|ref|NP_600393.1| DNA repair ATPase [Corynebacterium glutamicum ATCC 13032]
 gi|62390055|ref|YP_225457.1| DNA repair ATPase [Corynebacterium glutamicum ATCC 13032]
 gi|21323934|dbj|BAB98560.1| ATPase involved in DNA repair [Corynebacterium glutamicum ATCC
          13032]
 gi|41325391|emb|CAF19871.1| ATPase involved in DNA repair [Corynebacterium glutamicum ATCC
          13032]
          Length = 876

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          ++I  + I  FR    L L    D    +  GDN  GK++ILEAI  +   +  R  S
Sbjct: 1  MRIHEIIIDNFRAIEHLELRDIPDQGVIVIHGDNEQGKSSILEAIKTVLNSK-HRTTS 57


>gi|324991598|gb|EGC23531.1| RecF/RecN/SMC N domain protein [Streptococcus sanguinis SK353]
          Length = 887

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++I+ + I  F+N    + + F    T+FVG NG GKT I +AI     G+
Sbjct: 1  MRIQKILIKNFKNVKGTKVIDFQDNVTLFVGPNGFGKTTIFDAIELSLTGK 51


>gi|239614397|gb|EEQ91384.1| DNA repair protein Rad18 [Ajellomyces dermatitidis ER-3]
 gi|327351409|gb|EGE80266.1| DNA repair protein Rad18 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1172

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 95/324 (29%), Gaps = 68/324 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++    G+     R  S   
Sbjct: 132 IERVDCYNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTALTLCLGGKASVTNRGQSLKS 191

Query: 64  VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSV--------RCLQINDVV 109
             + G  S  +   R++     A        SI +E    RS            +I    
Sbjct: 192 FIKEGKDSA-TIVVRIKNQGDSAYNPNEFGNSIIIERHFSRSGASGFKIKSSSGRIVSTK 250

Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR--- 156
              +D +  +  +    P        +   + S    E+ +F      +  +D  +R   
Sbjct: 251 KSELDSITDYFALQIDNPMNVLSQDMARQFLSSSSPSEKYKFFVKGVQLEQLDQDYRLLE 310

Query: 157 ------------------------------RRMIDFERLMRGRNRLLT------EGYFDS 180
                                           + D    MR R R L       +     
Sbjct: 311 ESIDQTEAKLSIHLDQIKDLEVNRNNARAKLALSDKNETMRARIRNLRAQMAWVQVEEQE 370

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               S +AQ+AE   KI     E++ A         +         +    L+   D+  
Sbjct: 371 KNRDSCDAQLAEATRKIADLEAELVKADEVYQEADREHNVAFEAVRAARSELESHEDRGK 430

Query: 241 CALKEEYAKKLFDGRKMDSMSRRT 264
            A KE   + L + R++ +  R  
Sbjct: 431 VA-KESMTEVLKERRELQATQRTI 453


>gi|190343137|gb|ACE75533.1| HP1079 [Helicobacter pylori]
          Length = 381

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+ +   ++   A+  I  G N  GK+N+LEA+ +L  G+ 
Sbjct: 2  IQSVRIKNFKTFKDTQIDGFAKLNIITGQNNAGKSNLLEALYYL-VGKS 49


>gi|47093755|ref|ZP_00231505.1| DNA repair protein RecN [Listeria monocytogenes str. 4b H7858]
 gi|258611751|ref|ZP_05241932.2| DNA repair protein RecN [Listeria monocytogenes FSL R2-503]
 gi|290893523|ref|ZP_06556506.1| DNA repair protein RecN [Listeria monocytogenes FSL J2-071]
 gi|293596240|ref|ZP_05229574.2| DNA repair protein RecN [Listeria monocytogenes FSL J1-194]
 gi|293596928|ref|ZP_05265676.2| DNA repair protein RecN [Listeria monocytogenes HPB2262]
 gi|300766388|ref|ZP_07076345.1| DNA repair protein RecN [Listeria monocytogenes FSL N1-017]
 gi|47017876|gb|EAL08659.1| DNA repair protein RecN [Listeria monocytogenes str. 4b H7858]
 gi|258605897|gb|EEW18505.1| DNA repair protein RecN [Listeria monocytogenes FSL R2-503]
 gi|290556868|gb|EFD90399.1| DNA repair protein RecN [Listeria monocytogenes FSL J2-071]
 gi|293583873|gb|EFF95905.1| DNA repair protein RecN [Listeria monocytogenes HPB2262]
 gi|293593811|gb|EFG01572.1| DNA repair protein RecN [Listeria monocytogenes FSL J1-194]
 gi|300512892|gb|EFK39982.1| DNA repair protein RecN [Listeria monocytogenes FSL N1-017]
          Length = 559

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 64/197 (32%), Gaps = 23/197 (11%)

Query: 11  NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70
            I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG      AD  R G  
Sbjct: 2   TIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIRHGEE 56

Query: 71  -------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV--VD 114
                        +     A +E     +D  + LE    RS +   +IN  ++    + 
Sbjct: 57  RLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           ++   L           + +         RF    +     +++    +++ + +     
Sbjct: 117 QIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFKEYQTIEKEWQNW 176

Query: 173 LTEGYFDSSWCSSIEAQ 189
                  +     +  Q
Sbjct: 177 TKNERELAQRLDMLRFQ 193


>gi|147919076|ref|YP_687194.1| DNA repair ATPase (Rad50-like) [uncultured methanogenic archaeon
          RC-I]
 gi|110622590|emb|CAJ37868.1| predicted DNA repair ATPase (Rad50-like) [uncultured methanogenic
          archaeon RC-I]
          Length = 782

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-----LSPGRGFRRA 59
          + IK +++   ++Y    +      T   G NG GK+ +LEAI +     L   +     
Sbjct: 1  MIIKRVSLKNIKSYKEAEIELPEGITGISGLNGSGKSTVLEAIGYALFDCLPYTQ----- 55

Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLA 86
            A+  R G  +       +EG +GL 
Sbjct: 56 --AEFVRKGEKTG-EITVEIEGGDGLR 79



 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 75/200 (37%), Gaps = 20/200 (10%)

Query: 159 MIDFERLMRGRNRLLTEGYF--DSSWCSSIEAQMAELGVKI--NIARVEMINALSSLIME 214
           +   E+ +  +  L  +       + C  +  ++A    K+     R +++     LIME
Sbjct: 546 LSVLEKQLEEKRALYDKDAHLQAKATCELLNREVASTAAKVEEMTRRAKVVAEEIRLIME 605

Query: 215 YVQK----ENFPHIKLSLTGFLDGKFD------QSFCALKEEYAKKLFDGRKMDSMSRRT 264
            ++K    E     +     F+D   +           L  +   +       +    R 
Sbjct: 606 DLEKIKEIEKAQAEENEYMRFVDISRNIIKIAGPEIVQLYIDLISREATKMYCEIAGDRR 665

Query: 265 LIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
           L     +D  +   +     +    S GEQ    + + LA  ++++N+     ++ LDE 
Sbjct: 666 LEIRWTADYDIIMIEDGRERSFKQLSGGEQMSAALAVRLAILKILTNSD----VVFLDEP 721

Query: 323 SAHLDEDKRNALFRIVTDIG 342
           + ++DE +RN L + +T I 
Sbjct: 722 TQNMDERRRNNLAQEITRIK 741


>gi|146300448|ref|YP_001195039.1| AAA ATPase [Flavobacterium johnsoniae UW101]
 gi|146154866|gb|ABQ05720.1| AAA ATPase [Flavobacterium johnsoniae UW101]
          Length = 410

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++I+ L+I  FR         F +  T+  G NG GKT IL+A+  L+  R
Sbjct: 1  MRIRELSIKNFRALEDDRHFEFHSNITLIAGVNGKGKTAILDAL-VLALSR 50


>gi|76801260|ref|YP_326268.1| chromosome partition protein [Natronomonas pharaonis DSM 2160]
 gi|76557125|emb|CAI48699.1| chromosome partition protein [Natronomonas pharaonis DSM 2160]
          Length = 1192

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 96/313 (30%), Gaps = 77/313 (24%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK L +  F+++    ++      T   G NG GK+NI+++I F   L+   G R   
Sbjct: 1   MHIKALVLDNFKSFGQKTKIPLYEDFTTISGPNGSGKSNIIDSILFALGLARTSGIRADK 60

Query: 61  YADVTR----------IGSPSFFSTFARVEGMEGLADISIKL------------ETRDDR 98
             D+             G     S    ++  +G       +            E    R
Sbjct: 61  LTDLIYNPGHDDDGSGFGGEREASVEVVLDNSDGTLSREQVVSAAGSENVGDIDEITIRR 120

Query: 99  SVRCL---------QINDVVIRVVDELNKHLRISWLVPS---------MDRIFSGLSMER 140
            V+            +N   +  + ++   L  + + P          +  I +     R
Sbjct: 121 RVKQTDEETYYSYYYLNGRSVN-LSDIQDLLAQAGVTPEGYNVVMQGDVTEIITMTPGSR 179

Query: 141 RRFLDR--MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198
           R  +D    V   D +                    E  F+     +++ ++ E  ++I 
Sbjct: 180 REIIDEIAGVAQFDAK-------------------KEDAFEE--LGTVQERIDEADLRIE 218

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD----- 253
               + ++ L       ++ ++    K    G+L     +     +    +++ +     
Sbjct: 219 EK-QQRLSQLEDERETALEYQDLQEEKAEYEGYLKAAELEDKREERSSVRERIEETEATL 277

Query: 254 ---GRKMDSMSRR 263
               R +D    R
Sbjct: 278 ETKQRTLDERQGR 290


>gi|320535949|ref|ZP_08036014.1| segregation protein SMC [Treponema phagedenis F0421]
 gi|320147200|gb|EFW38751.1| segregation protein SMC [Treponema phagedenis F0421]
          Length = 1028

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 101/317 (31%), Gaps = 59/317 (18%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A   R+ F    T  +G NG GK+N+++AI   L     +  R   
Sbjct: 1   MFLKSLEIFGFKSFADRTRIEFSEGITALLGPNGCGKSNVVDAIKWVLGEQSPKTLRADK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISI------KLETRDDRSVRCLQINDVV 109
             DV   G+      +       +    G+ D+ I      +   R   S   +  N   
Sbjct: 61  MEDVIFNGTETRKPLNVAEVTFTISNETGILDLDIPEIAIKRRLFRSGESEYFINNNPAK 120

Query: 110 IRVVDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLDRM---------------- 147
           ++ + EL       K          +D+I S    +RR   +                  
Sbjct: 121 LKEIRELFWDTGVGKVAYSVMEQGKIDQILSSKPEDRRYLFEEAAGITKFKIRRMEAERK 180

Query: 148 -------VFAIDPRHRRRMIDFERLMRGRNRLLT-EGYFDSSWCSSIEAQMAELGVKI-- 197
                  +  ID   +     +E L +   +        D  +   ++  +  L   +  
Sbjct: 181 LEKTQENMRQIDGILQEVSKSYETLKKQAEQTKRYRKLKDEIFEDELDINLLRLKGFVDN 240

Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLS------------LTGFLDGKFDQSFCALKE 245
           +  R E I A          + +  H  LS            L GF    +  +     +
Sbjct: 241 HAQRSENIKATKEKRDSLQAEIDSIHALLSENMDEINAMETKLDGFHKEIYGLAIEQKAK 300

Query: 246 EYAKKLFDGRKMDSMSR 262
           +   +L   R+ +  ++
Sbjct: 301 QNEAQLHAQRQSELKTK 317


>gi|300925838|ref|ZP_07141686.1| hypothetical protein HMPREF9548_03883 [Escherichia coli MS 182-1]
 gi|300418090|gb|EFK01401.1| hypothetical protein HMPREF9548_03883 [Escherichia coli MS 182-1]
          Length = 540

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L +  FR+      + F    T+ +G N  GKT IL A+ +L
Sbjct: 1  MKLTKLVLENFRSVRERQEIDFAP-VTLLLGPNSAGKTTILIALFYL 46


>gi|225619840|ref|YP_002721097.1| putative ATP-binding protein [Brachyspira hyodysenteriae WA1]
 gi|225214659|gb|ACN83393.1| putative ATP-binding protein [Brachyspira hyodysenteriae WA1]
          Length = 360

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
           + ++ + I+ F  +      F     IF+G+NG GKT++L+AI  L
Sbjct: 12 NMYVENVRINNFTVFKDCYTDFSKGVNIFIGENGTGKTHLLKAIYCL 58


>gi|190894002|ref|YP_001984296.1| probable overcoming lysogenization defect protein [Rhizobium etli
           CIAT 652]
 gi|190699663|gb|ACE93746.1| probable overcoming lysogenization defect protein [Rhizobium etli
           CIAT 652]
          Length = 603

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 65/380 (17%), Positives = 119/380 (31%), Gaps = 68/380 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRR 58
           +++  + I  FR +  L +  +      +G+N  GKT IL AI         S  R   R
Sbjct: 1   MRVARIVIKNFRTFQRLDVNVENDLCCIIGENNTGKTAILRAIQICLDISLPSTLRSLLR 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADIS--------------IKLETRDDRSVRCLQ 104
                   I  P+       + G EG+ +                I    R    VR   
Sbjct: 61  EDINANVDISIPTQVLIGVELTGFEGIVNEEALVSTWKTGTDRARIFYRFRPKPGVREQL 120

Query: 105 INDVVIR---VVDELNKHLRISWLVPSMDRI----FSGLSMERRRFLDRMVFAIDPRHRR 157
            +  +      +D+    +R     P++D +          E  RF D   F +   H  
Sbjct: 121 ASGAIQSGSLTLDDYAWEIRGGG-NPAIDLLDLEWNEDGVGEAVRFADLQSFLV--IHLP 177

Query: 158 RMIDFERLMRG-RN----RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
            + D E  +R  R     +L+            +   + E    I     + I+ ++  I
Sbjct: 178 ALRDVEGDLRNPRQSPLIKLIESFEIPKEEQEELIQILDEANNLIAK--SKTISDVAQAI 235

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
               +  + P  ++     L      +F A+       L D    +    R  +G +   
Sbjct: 236 DSRFKDVSGPAFEMGAKLGLSAA---TFRAILRNLKLILSDTSLQEFEPGRNGLGMNNI- 291

Query: 273 LIVDYCDKAITIAHG---STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           L +    + +        S+G+                        ++L++E  AHL   
Sbjct: 292 LYISILIEYLKRRIAGGNSSGQ------------------------LILIEEPEAHLHPQ 327

Query: 330 KRNALFRIVTDIGSQIFMTG 349
            + +L   +  IG Q  +T 
Sbjct: 328 LQYSLISALNSIGVQTVLTS 347


>gi|77458026|ref|YP_347531.1| condensin subunit Smc [Pseudomonas fluorescens Pf0-1]
 gi|77382029|gb|ABA73542.1| putative chromosome partition protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 1162

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 112/332 (33%), Gaps = 60/332 (18%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLLGEWAAYAEISIRRKVTRDSQT-TYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 AKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIESKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +  + R+      +    EY  +
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREEL-----ERQLERLHRQAEAAKKYQEYKAE 224

Query: 219 ENFPHIKLSLTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
           E     +LS   + D      + +      +  +   + + R  D+   R   G H  DL
Sbjct: 225 ERQLKAQLSALRWQDLNDQVSQRESIIGNQEISFEALVAEQRNADAAIERLRDGHH--DL 282

Query: 274 IVDYC---------DKAITIAHGS--TGEQKV 294
              +             I     S   G+Q++
Sbjct: 283 SERFNLVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|313576872|gb|ADR67045.1| hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae]
          Length = 318

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          ++ +I ++F+ + +FR    ++L  D + TI VG N  GKT+IL A+  FL+ G  F
Sbjct: 10 LSGQISLRFVELCQFRRLGKVQLEIDPKTTILVGANNSGKTSILAALRHFLADGSSF 66


>gi|315302809|ref|ZP_07873572.1| putative ATPase involved in DNA repair [Listeria ivanovii FSL
           F6-596]
 gi|313628828|gb|EFR97198.1| putative ATPase involved in DNA repair [Listeria ivanovii FSL
           F6-596]
          Length = 110

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 5   IKI--KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +K+  K L +  F+N+ +L + ++ Q T   G NG GKT+I EA+++L  G         
Sbjct: 1   MKVVFKQLTLENFKNHKNLVVDYE-QVTQISGKNGFGKTSIGEAVTWLLYGTDLLGTKIE 59

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
                  P        V  +       + L  +  ++ +   IN+V  R   E    +
Sbjct: 60  P-----QPLGTEEEVHVSLLINADGKDLLLTKKQKKTAKYA-INEVP-RKATEFADMI 110


>gi|282848862|ref|ZP_06258252.1| RecF/RecN/SMC N-terminal domain protein [Veillonella parvula ATCC
           17745]
 gi|282581367|gb|EFB86760.1| RecF/RecN/SMC N-terminal domain protein [Veillonella parvula ATCC
           17745]
          Length = 438

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 137/417 (32%), Gaps = 90/417 (21%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           M   IKI    +   +   ++         TI  G NG GKT+IL+AI++   G  F  +
Sbjct: 1   MKESIKINSFELENVKRVKAVSYEPSPNGLTIIGGKNGQGKTSILDAIAWTLGGAKFEPS 60

Query: 60  SYADVTRIGSPSFFSTFARVEG----MEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
           S     R GS +      ++             ++K+   + +      ++  + ++  +
Sbjct: 61  SA---VRDGSYNPPKLEVKLSNGLVVTRSGNSSTLKVVDPEGKKSGQRILDGFIGQLALD 117

Query: 116 LNKHLRIS--WLVPSMDRIFSGLSME------------RRRFLDRMVFAIDPRHRRRMID 161
           L K + +S       + ++                   +R  + ++    D  + + ++ 
Sbjct: 118 LPKFMEMSDKEKANELLKLLGVEDELNKLEGKHQEVYAKRHSIGQIANQKDK-YAKELVG 176

Query: 162 FE----------RLMRGRNRLL---TEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           ++           L++ +  +L    E     +  S+I+AQM  +   ++ A  + +  L
Sbjct: 177 YDDVPLEPISASELIQQQQAILLKNAENQKKRNNVSAIQAQMVTVNNLVDEA-QKKLEEL 235

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA------KKLFDGRKMDSMS- 261
            +      Q +      ++ T   D + D+S   L+E+        +K+   ++      
Sbjct: 236 QAK-----QAQLAEDYDIATTAAKDLE-DESTAELEEQIKNVDAINQKVRANQERARALQ 289

Query: 262 ------------------------------RRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
                                         +  L G    D ++ Y D+      G+  E
Sbjct: 290 EAADYKADYDNLTGELETIREDKNKLLESVQMPLSGLSIQDGVLIYNDRQWDCMSGA--E 347

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           Q      + +A A  I          +L +    +D D        +   G Q+  T
Sbjct: 348 Q------LKVATA--IVRALNPKCGFVLMDKLEQMDVDTMKEFGAWLESEGLQVIAT 396


>gi|145295309|ref|YP_001138130.1| DNA repair ATPase [Corynebacterium glutamicum R]
 gi|140845229|dbj|BAF54228.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 876

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          ++I  + I  FR    L L    D    +  GDN  GK++ILEAI  +   +  R  S
Sbjct: 1  MRIHEIIIDNFRAIEHLELRDIPDQGVIVIHGDNEQGKSSILEAIKTVLNSK-HRTTS 57


>gi|75812881|ref|YP_320498.1| ATPase [Anabaena variabilis ATCC 29413]
 gi|75705637|gb|ABA25309.1| ATPase [Anabaena variabilis ATCC 29413]
          Length = 352

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 64/392 (16%), Positives = 129/392 (32%), Gaps = 69/392 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-------HTIFVGDNGVGKTNILEAISF---LSPGR 54
           +KI+ L +  F+ + S    F            + +G NG GKT++L+AI+     + GR
Sbjct: 1   MKIQSLQLKYFKKFRSSTFDFTDPETGLARDIIVLIGMNGAGKTSLLQAIAATLGTATGR 60

Query: 55  GFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             +  S  +          S +   E       + ++  + +  +VR         + + 
Sbjct: 61  -LKEPSDLEWAGFNYELLGSNWGAFE---PEVTVQVQFSSSELEAVRYF------QQKLR 110

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAID-PRHRRRMID------FERL 165
           E+ + L+     P+   I +      R   D    +F      + ++++       FER+
Sbjct: 111 EMGRDLQ----PPAEKHIVNLKWRNGRVQADSAAELFQFKGREYAKQLLRAEGFSAFERV 166

Query: 166 ------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
                    R                 E  + +   +++  R            ++ Q  
Sbjct: 167 GTILWYTEQRTSTSLTTEDPERKLEITEDLLRD---RLSKWR------------QFHQDV 211

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
             P I       L       +  ++  Y     +      + R  +           Y  
Sbjct: 212 GTPKI-----PNLRPGQKDLYAEIERAYKAVFPERSFEGPVLRENVDDILSEPWFYLYDG 266

Query: 280 KAI-TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           K    I+  S GE+ +  + +  A   +         ++L+DEI  HL    + AL R +
Sbjct: 267 KNQYEISEMSGGERAIFPMLMDFASWNI------HNSVILIDEIELHLHPPMQQALLRAL 320

Query: 339 TDIGS--QIFMTGTDKSVFDSLNETAKFMRIS 368
             +G+  Q  +T T     + L   A  +R+ 
Sbjct: 321 PKLGTNNQFIIT-THSDYVEQLVPEAYIIRLE 351


>gi|307155053|ref|YP_003890437.1| hypothetical protein Cyan7822_5281 [Cyanothece sp. PCC 7822]
 gi|306985281|gb|ADN17162.1| conserved hypothetical protein [Cyanothece sp. PCC 7822]
          Length = 369

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K L I  +R +    +   A+  + VGDN +GKT+ LEAI  L
Sbjct: 2  LKDLRIKNYRGFEDFYIDGLARVNLIVGDNNIGKTSFLEAIYLL 45


>gi|241518212|ref|YP_002978840.1| hypothetical protein Rleg_5469 [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|240862625|gb|ACS60289.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
          trifolii WSM1325]
          Length = 763

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++IKF+ +S FR   S  + FD + TIFVG N  GKT+ + A+ + 
Sbjct: 1  MRIKFVEVSNFRKLKSTHIDFDKKTTIFVGANNSGKTSAMVALRYF 46


>gi|148675529|gb|EDL07476.1| structural maintenance of chromosomes 1A, isoform CRA_a [Mus
           musculus]
          Length = 1189

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|72019658|ref|XP_790892.1| PREDICTED: similar to XCAP-E [Strongylocentrotus purpuratus]
 gi|115939351|ref|XP_001184142.1| PREDICTED: similar to XCAP-E [Strongylocentrotus purpuratus]
          Length = 404

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 102/300 (34%), Gaps = 43/300 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL   S     R  
Sbjct: 1   MYIKEIIVDGFKSYAQRTEIKGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAG 60

Query: 60  SYADVTRIGSPSFFS------TFARVE------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++   G  +  +       F   +      G +   + ++  +       + L IN 
Sbjct: 61  SLQELVYKGGQAGVTKATVTIVFDNKDKKQSPVGYDSFDEFTVSRQVVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFE 163
                    +    +   V +   +     +   + L+     ++  I+     RM + +
Sbjct: 120 SNANNSRVQDLFCSVQLNVNNPHFLIMQGRIT--KVLNMKPPEILSMIEEAAGTRMYENK 177

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN------ALSSLIMEYVQ 217
           +    +     +        S +  ++     ++N  R   +        L  L   +V 
Sbjct: 178 KASAQKTIEKKDAKLKEIE-SVLNEEITPTLTRLNEERSSYLEYQKVLRELDHLTKLHVA 236

Query: 218 KENFPHIKLSLTGFLD-GKFDQSFCALKEEYAK---KLFD--------GRKMDSMSRRTL 265
            +     KLS     + GK  ++  A+++   +   KL +         ++ D  +   L
Sbjct: 237 YQFVSAEKLSKESEQELGKIAEATTAMRQRMKEIDDKLLELTNTIQALEKERDEEAGGVL 296


>gi|320450440|ref|YP_004202536.1| chromosome segregation SMC protein [Thermus scotoductus SA-01]
 gi|320150609|gb|ADW21987.1| chromosome segregation SMC protein [Thermus scotoductus SA-01]
          Length = 1010

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 6   KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRASYA 62
           +I  L +  F+++     L F    T  +G NG GK+N++EA+ F++  R    R     
Sbjct: 6   RIDRLVLQGFKSFAERTALDFPDPITGIIGPNGSGKSNLVEALRFVTGARAHELRGQELG 65

Query: 63  DVTRIGSPSF---FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
                G            R+E   G   ++++     DRS    ++N   +  
Sbjct: 66  TFLFHGGEGRPPQAMAEVRLELSRGRERLTVERRIEGDRS--LFRVNGRPLSA 116


>gi|300869534|ref|ZP_07114116.1| ATP binding protein [Oscillatoria sp. PCC 6506]
 gi|300332507|emb|CBN59314.1| ATP binding protein [Oscillatoria sp. PCC 6506]
          Length = 420

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/381 (15%), Positives = 131/381 (34%), Gaps = 71/381 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K+K L I+ FR   +L L F+  +  + +G+NGVGK++IL+ I+ L        + +  
Sbjct: 1   MKVKRLKINAFRGIDNLNLEFNPDEPIVIIGNNGVGKSSILDCIAILL-------SRFLY 53

Query: 64  VTRIG------SPSFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIR----- 111
           + +        +PSFF       G  E    I I+L    + S    + +    +     
Sbjct: 54  LIQFPNKNDSLNPSFFRVLDIKNGYKEIRNQIIIELSQSQEISWSVTKEDSGNEKLEGME 113

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + E+ +++   W          G         +  +    P          R +  R  
Sbjct: 114 KLKEVAQNIHNQW---------KGSP-----LANIPLAVYYPT--------NRGVIER-H 150

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           L ++  +      +    + ++  +I+       ++      +    E+  + ++     
Sbjct: 151 LESQNGYSFKQTDAYNQALEQI--QIS------FDSFFQWFADL---EDLENEQIRDNHE 199

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
              +  ++             + R   S+ R T          V    + + +   S GE
Sbjct: 200 HRNRNLETVRQSIYSLIPNFSNLRVRRSILRMT----------VKKQGQELIVNQLSDGE 249

Query: 292 QKVVL----VGIFLAHARL-ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQ 344
           + ++     +   LA A   + N    + ++L+DEI  HL    +  +   +T      Q
Sbjct: 250 KCLLAMVGDLARRLAIANPGLENPLEGSAVVLIDEIELHLHPKWQREIIPALTRTFPNCQ 309

Query: 345 IFMTGTDKSVFDSLNETAKFM 365
             +T     V   +     ++
Sbjct: 310 FIITTHSPQVISQIKPDGIYI 330


>gi|288931956|ref|YP_003436016.1| SMC domain protein [Ferroglobus placidus DSM 10642]
 gi|288894204|gb|ADC65741.1| SMC domain protein [Ferroglobus placidus DSM 10642]
          Length = 885

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I+ + +   ++Y+  ++ F       +G NG GKT ILEAI F+         + +D  R
Sbjct: 2  IREVYLENVKSYSRQKIEFTEGINAIIGRNGAGKTTILEAIGFVLF--DHLPYNISDFVR 59

Query: 67 IGSPSFFSTFARVEGMEGLADISIK 91
           G          V  ++    I+++
Sbjct: 60 RGEKKAEIRVKFVSPLDEREYIAVR 84



 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 75/175 (42%), Gaps = 26/175 (14%)

Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
              ++E +N +  ++ E +     P +  + T  +  + ++ FC + ++Y+ ++      
Sbjct: 731 FRKKLEFVNLVREVLKEAI-----PQMIKAYTEAISAEANRIFCEIMDDYSWQIELSEDF 785

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317
              ++                 + I+    S GEQ V  + + LA  + +S+    A ++
Sbjct: 786 GIKAKY--------------MGREISFQQMSGGEQVVAALSVRLALLKFLSS----AGVV 827

Query: 318 LLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNETAKFMRISNH 370
             DE + ++DE++R    R +T+I    QIF+  T    F+ + E    +R  N 
Sbjct: 828 FFDEPTQNMDEERRRNFARQITNIKGFRQIFV-ITHDDTFEEMVENVIRVRKENG 881


>gi|164423946|ref|XP_957879.2| hypothetical protein NCU07554 [Neurospora crassa OR74A]
 gi|157070300|gb|EAA28643.2| hypothetical protein NCU07554 [Neurospora crassa OR74A]
          Length = 1117

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 97/335 (28%), Gaps = 56/335 (16%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI------SFLSPGRGF 56
           + IK + I  F++Y    +   F     + VG NG GK+N   AI      ++ +  R  
Sbjct: 1   MHIKQIIIQGFKSYKEQTVIEPFSPGTNVIVGRNGSGKSNFFAAIRFVLSDAYTNMSREE 60

Query: 57  RRASYADVTRIGSPSFF------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           R+A    +   GS S          F   +         + +            ++  V 
Sbjct: 61  RQA----LLHEGSGSAVMSAYVEIIFDNTDKRFSEPGDEVVIRRTIGLKKDEYSVDKKVQ 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSM---------ERRRFLDRMVFAIDPRHRRRMID 161
              D L       +   +   I     +         ER   L  +       +  R I 
Sbjct: 117 TRADVLKILETAGFAKENPFYIVPQGRVAAITNMKENERLNLLKEIAGT--NLYDDRRIQ 174

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV------------------- 202
             ++M   N        D      I+ +++EL  + +  R                    
Sbjct: 175 SLKIMAETNS--KREKIDE-LLEYIKERLSELEEEKDELRDFQEKDRERRCLEYAHWHRL 231

Query: 203 -----EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
                  +  +  +            ++L  T       D  F  LK+       + R++
Sbjct: 232 QETNNNTLEQIEEVRQGGAGATTKDRVQLQKTEKEIAALDHKFQELKQTLELLAIERRQL 291

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           D   + T     +++L +   D+       +  +Q
Sbjct: 292 DEDRKDTARSQAKAELKLKDLDETRHSREKAQQQQ 326



 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 84/264 (31%), Gaps = 31/264 (11%)

Query: 91   KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
            KLE       R LQ          E  K++R          I    +  + R ++  +  
Sbjct: 837  KLEKNSQTKARLLQ-------QAAEYAKNIR-------DLGILPEEAFGKLRKVNEALKK 882

Query: 151  IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
                +++    +      R +LL       +   SIE  +  L    + A       +S 
Sbjct: 883  YKHINKKAFDQYNNFTTQREQLLKRRKELDTSQKSIEELIQHLDHAKDEAIERTFKQVSR 942

Query: 211  LIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
                  +K     H +L +     G  +++     E+             +   + +G  
Sbjct: 943  EFSTIFEKLVPAGHGRLVIQRKAAGSKNRNPEDSDEDGPSSAK------GVESYSGVGIS 996

Query: 270  RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
             S       D+   I   S G++ +  + +  A           +P ++ DE+ A+LD  
Sbjct: 997  VS-FNSKVMDEQQKIQQLSGGQKSLCALCLIFAL-----QAAESSPFVIFDEVDANLDAQ 1050

Query: 330  KRNALFRIVTDI----GSQIFMTG 349
             R A+  ++  I     +Q   T 
Sbjct: 1051 YRTAVAALLDSISKTQKTQFICTT 1074


>gi|159042437|ref|YP_001541689.1| SMC domain-containing protein [Caldivirga maquilingensis IC-167]
 gi|157921272|gb|ABW02699.1| SMC domain protein [Caldivirga maquilingensis IC-167]
          Length = 805

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 102/282 (36%), Gaps = 31/282 (10%)

Query: 1   MTNRIKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--- 56
           M++R+ I  + +  FR + S +   F     +  G  G GK++I++AI F   G      
Sbjct: 1   MSSRLIIDSVELEGFRVFKSRVVFNFIDGLNVIHGPIGSGKSSIIQAIEFALYGNQLEAR 60

Query: 57  -RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            R A  +D+    S    +   R+ G      I  +L  + + + + L +N       D+
Sbjct: 61  ERVARLSDLINEDSNEA-TVALRLSGNL----ILRRLMRKGNSTYQALTLNG-NQSTDDQ 114

Query: 116 LNKHL--------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           L   L        R   +           S+ RR      +F ++      +     + +
Sbjct: 115 LVTLLGVDDDDFERFILISHKTLEDLVYGSVRRRTLAIDRLFGLE--FLEILGSVLPV-K 171

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGV--KINIARVEMINALSSLIMEYVQKENFPHIK 225
             N  +       +     E  + + G        R  +   + S I E V+  +  +++
Sbjct: 172 QVNEAIDIRKQRLASIREAEDLLRKYGSIKAALDKRSSLAAEIES-IREQVKAISSAYVE 230

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKL---FDGRKMDSMSRRT 264
           L+       ++ ++   ++E+Y + L      R+++   R  
Sbjct: 231 LA---NRRSRYVEAIKRVEEQYTRYLYVRERLRQLEEELRSI 269



 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/100 (15%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           L      + + ++  S G++  +     LA  RL+ +  G    +L+DE   ++D + + 
Sbjct: 698 LYALRGGRDVPVSRLSDGQRLTLAQSFVLAVYRLMQHNLG---FILMDEPIPYVDANAKR 754

Query: 333 ALFRIV-----TDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
                +       + +Q+ +   D ++ ++L ++++  ++
Sbjct: 755 TFSETIVRAISEGMINQVILATQDDALLEALIKSSEGGKV 794


>gi|309389187|gb|ADO77067.1| chromosome segregation protein SMC [Halanaerobium praevalens DSM
           2228]
          Length = 1205

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62
           +K + +  F+++A+   +  +   T  VG NG GK+NI++AI   L     +  R +  A
Sbjct: 9   LKKIRLKGFKSFANKTDIEIEENITAIVGPNGSGKSNIVDAIRWVLGEQSAKNLRGSRMA 68

Query: 63  DVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           D+   GS +      A V       +  + +E ++    R +  + 
Sbjct: 69  DIIFSGSETLKAKKKASVTLFFDNTNGELPVEGKELTLGRQVSDDG 114


>gi|258645185|ref|ZP_05732654.1| conserved hypothetical protein [Dialister invisus DSM 15470]
 gi|260402534|gb|EEW96081.1| conserved hypothetical protein [Dialister invisus DSM 15470]
          Length = 543

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 66/180 (36%), Gaps = 27/180 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA---SY 61
           + I  + I  +R +  +   FD++    VGDN +GK+N L  +  ++ G GFR A     
Sbjct: 1   MYISDVRIENYRTFQDVTFHFDSRANYIVGDNNIGKSNFLSFLKTVTHGYGFREADFLDE 60

Query: 62  ADVTR-----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            +  R       +      FA +E  + ++++ +      D   R               
Sbjct: 61  NNPIRVFFTLSSADMGTGEFAHIELRQLVSEV-VPTLINSDTGERL-------------P 106

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
            +++R  + +   D     +   R    D  +  I   ++  +   E  +R    LL + 
Sbjct: 107 LEYMRCLFYI---DYALDDVP--RNMVTDEELLQISSLYKDYLSAGEETIREAEELLAKK 161


>gi|229006502|ref|ZP_04164148.1| DNA repair protein recN [Bacillus mycoides Rock1-4]
 gi|228754747|gb|EEM04146.1| DNA repair protein recN [Bacillus mycoides Rock1-4]
          Length = 447

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 103/277 (37%), Gaps = 51/277 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + F    T+  G+ G GK+ I++AIS L  GRG      A+  R
Sbjct: 6   LSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRG-----SAEFVR 60

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI-- 110
            G+                    + E ++   +  + +  RD         ++N  ++  
Sbjct: 61  YGTEKAEIEGLFYIEDDKHPCITKAEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTL 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL------DRMVFAIDPRHRRRMIDFER 164
            ++ E+ K L           + +    ER  F+      DR+V  ++  ++    ++E+
Sbjct: 121 SILKEIGKTLVDIHGQHETQDLMN---EERHLFMLDHFDGDRIVNQLE-IYQGVYGEYEQ 176

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L +     L     +       E QMA         R+++I      I +   K +    
Sbjct: 177 LKKQ----LKSLTEN-------EQQMA--------HRLDLIQFQHEEIRKADLKVD-EEN 216

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +L+        F++ + AL + Y     DG  +D + 
Sbjct: 217 ELTEERLKISNFEKIYKALGDAYRSLSEDGSGLDHVR 253


>gi|209524188|ref|ZP_03272738.1| SMC domain protein [Arthrospira maxima CS-328]
 gi|209495279|gb|EDZ95584.1| SMC domain protein [Arthrospira maxima CS-328]
          Length = 457

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 59/418 (14%), Positives = 124/418 (29%), Gaps = 88/418 (21%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           ++I+ + ++ F  + +L +            T+FVG NG GK++IL A   L+    +  
Sbjct: 1   MEIQRVILTNFGLFKNLEISLAPTQQNPSNITVFVGKNGAGKSSILTA---LATSLSWFT 57

Query: 59  ASYA----------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
           A             + + + S +F S    +E  +          +  +   +       
Sbjct: 58  ARLRTEKGSGNPIPENSILNSANFASI--EIEVYDNNHPSENADISNINHQFKWTLAKAQ 115

Query: 109 VIRVV---DELNKHLRISWLVPSMDR--------IFSGLSMERRRFLDRMVFAIDPRHRR 157
             R       LN   R++ +              + +   +ER   LD  +        +
Sbjct: 116 KGRKSPYNSNLNDCTRLANIYRDDLSDNDQTSLPLIAFYPVER-VVLDMPLKIRTKHSFK 174

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
           ++  ++  +                           GV                  E   
Sbjct: 175 QLDGYDNALNQ-------------------------GVD--------FRRFFEWFRERED 201

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG---PHRSDLI 274
            EN   I       +     Q+   + E+  +     +     + RT I    P   +L 
Sbjct: 202 TENESAIPQDFWNEI-IPLLQTDSTVWEQLQQLNASAKDRQLTAVRTAISRFMPDMDNLR 260

Query: 275 VDY----------CDKAITIAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLL 319
           V              + + +A  S GE+ ++ +       LA     + N      I+L+
Sbjct: 261 VRRKPRLYMAIDKNGETLNVAQLSQGEKSLMALVGDIARRLAMLNPALENPLKGDGIVLI 320

Query: 320 DEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           DE+  HL    + +    + D     Q  +T     +     +      ++N +   +
Sbjct: 321 DEVDLHLHPSWQRSFCDRLIDTFPNCQFVLTTHSPLIISDC-QNILVYTLNNGELQQL 377


>gi|146303545|ref|YP_001190861.1| SMC domain-containing protein [Metallosphaera sedula DSM 5348]
 gi|145701795|gb|ABP94937.1| SMC domain protein [Metallosphaera sedula DSM 5348]
          Length = 858

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 54/131 (41%), Gaps = 18/131 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62
           +++  + + +F ++    + F     + VG NG GK++I+EAI+F      FR       
Sbjct: 1   MRLDRVYLKDFLSHEKTTVSFKGDINVIVGQNGAGKSSIIEAITFAL----FREGKGKQE 56

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD-------RSVRCLQINDVVIRVVDE 115
           ++ + G      T A +E +    ++ +++  +               +    V + ++E
Sbjct: 57  EMIKKG-----KTNAELELVLRDNNLEVRVLRKIPPGDQLYVNGKLTARGTKEVTKKIEE 111

Query: 116 LNKHLRISWLV 126
           L  + ++    
Sbjct: 112 LGLNSKVVTST 122



 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 73/173 (42%), Gaps = 17/173 (9%)

Query: 188 AQMAELGVKINIARV--EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           AQ+ E   ++  +R   E +  L  ++ E + +        +L G ++   +        
Sbjct: 674 AQLQEKVKEVEKSRRAKERLEKLRKVLSEGMLQSYLIS---TLKGRIENNLNDIVSMFDI 730

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            Y + L +  +  ++S +  +        ++   + ++I   S GE+  V + + LA AR
Sbjct: 731 SYTRILVNMTQTKTLSGKVELT------ALNQSGQQLSIGMLSGGEKIAVALALRLAIAR 784

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTGTDKSVF 355
            +   TG    ++LDE + HLD  +R  L  ++ +  +   QI +   D  V 
Sbjct: 785 AL---TGEIGFMILDEPTVHLDSMRRAELLSVIRESMNVVPQIIVVTHDDEVL 834


>gi|323333010|gb|EGA74412.1| Smc3p [Saccharomyces cerevisiae AWRI796]
          Length = 1157

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 98/303 (32%), Gaps = 26/303 (8%)

Query: 79   VEGMEGLADISIKLETRDDRSVRCLQINDVV-IRVVDELNKHLRISWLVPSM------DR 131
            +E       + +K      +SV    I     +   +EL + +R   L+P          
Sbjct: 839  LEKANNQQRLLLKKLDNFQKSVEKTMIKKTTLVTRREELQQRIREIGLLPEDALVNDFSD 898

Query: 132  IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
            I S   ++R   ++  +  +   ++R   +F++    R  L            SI+  + 
Sbjct: 899  ITSDQLLQRLNDMNTEISGLKNVNKRAFENFKKFNERRKDLAERASELDESKDSIQDLIV 958

Query: 192  ELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            +L  +   A       +S       ++       KL +    D   D       +  A+ 
Sbjct: 959  KLKQQKVNAVDSTFQKVSENFEAVFERLVPRGTAKLIIHRKNDNANDHDESIDVDMDAES 1018

Query: 251  LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST--GEQKVV-LVGIFLAHARLI 307
                   DS    T +        V +  K     H     G QK V  + + LA     
Sbjct: 1019 NESQNGKDSEIMYTGVSIS-----VSFNSKQNEQLHVEQLSGGQKTVCAIALILA----- 1068

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFM 365
                  A   L DEI A LD+  R A+  ++ ++   +Q   T       D L    KF 
Sbjct: 1069 IQMVDPASFYLFDEIDAALDKQYRTAVATLLKELSKNAQFICTT---FRTDMLQVADKFF 1125

Query: 366  RIS 368
            R+ 
Sbjct: 1126 RVK 1128


>gi|261195817|ref|XP_002624312.1| DNA repair protein Rad18 [Ajellomyces dermatitidis SLH14081]
 gi|239587445|gb|EEQ70088.1| DNA repair protein Rad18 [Ajellomyces dermatitidis SLH14081]
          Length = 1172

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 95/324 (29%), Gaps = 68/324 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++    G+     R  S   
Sbjct: 132 IERVDCYNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTALTLCLGGKASVTNRGQSLKS 191

Query: 64  VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSV--------RCLQINDVV 109
             + G  S  +   R++     A        SI +E    RS            +I    
Sbjct: 192 FIKEGKDSA-TIVVRIKNQGDSAYNPNEFGNSIIIERHFSRSGASGFKIKSSSGRIVSTK 250

Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR--- 156
              +D +  +  +    P        +   + S    E+ +F      +  +D  +R   
Sbjct: 251 KSELDSITDYFALQIDNPMNVLSQDMARQFLSSSSPSEKYKFFVKGVQLEQLDQDYRLLE 310

Query: 157 ------------------------------RRMIDFERLMRGRNRLLT------EGYFDS 180
                                           + D    MR R R L       +     
Sbjct: 311 ESIDQTEAKLSIHLDQIKDLEVNRNNARAKLALSDKNETMRARIRNLRAQMAWVQVEEQE 370

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               S +AQ+AE   KI     E++ A         +         +    L+   D+  
Sbjct: 371 KNRDSCDAQLAEATRKIADLEAELVKADEVYQEADREHNVAFEAVRAARSELESHEDRGK 430

Query: 241 CALKEEYAKKLFDGRKMDSMSRRT 264
            A KE   + L + R++ +  R  
Sbjct: 431 VA-KESMTEVLKERRELQATQRTI 453


>gi|307177759|gb|EFN66756.1| Structural maintenance of chromosomes protein 3 [Camponotus
          floridanus]
          Length = 1202

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
          + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1  MYIKQVIIQGFKSYREQTIVEPFDPKHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60

Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLET 94
                         A VE +   +D  + ++ 
Sbjct: 61 RQALLHEGTGPRVISAHVEIIFDNSDGRLPIDK 93



 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 10/94 (10%)

Query: 277  YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
            +  +   +   S G++ +V + +  A           AP  L DEI   LD   R A+  
Sbjct: 1090 HRGEMREMNQLSGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVAD 1144

Query: 337  IVTDIGS--QIFMTGTDKSVFDSLNETAKFMRIS 368
            ++ ++ S  Q F+T T     + L    KF  + 
Sbjct: 1145 MIHELSSDAQ-FITTT--FRPELLQHANKFYGVK 1175


>gi|223986251|ref|ZP_03636266.1| hypothetical protein HOLDEFILI_03576 [Holdemania filiformis DSM
           12042]
 gi|223961777|gb|EEF66274.1| hypothetical protein HOLDEFILI_03576 [Holdemania filiformis DSM
           12042]
          Length = 979

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 92/265 (34%), Gaps = 42/265 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFR--- 57
           + +K + +  F+++A  + + FD   T  VG NG GK+NI +AI   L     +  R   
Sbjct: 1   MFLKRIEMQGFKSFADKVVIQFDHDVTGIVGPNGCGKSNITDAIRWVLGEQSVKSLRGNA 60

Query: 58  -------RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
                   ++   +  +   +     +R +    L +I +      +       IN   +
Sbjct: 61  MTDVIFAGSADRRMVNMAEVTLVFDNSRRDLNSELDEIEVTRRLYRNNGEAQYLINRNPV 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL--------SMERRRFLDR--MVFAIDPRHRRRMI 160
           R+ D ++  L       S+  I  G          +ERR   +    V     R    + 
Sbjct: 121 RLKDVVDLILDSGLGKDSLSMISQGNISSFAEAKPIERRAIFEDAAGVSKYKKRKLESLS 180

Query: 161 DFERLMRGRNRLLTEGYFDSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
             ER         T+   D +    S +E Q++ L       R      +       +Q+
Sbjct: 181 KLER---------TKENLDRTQDILSELERQVSPL------KRQARKAEIYREKKARLQE 225

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCAL 243
                +   +T  L+ + D++   L
Sbjct: 226 IEIAVLVEEIT-HLNQQIDEAVKTL 249


>gi|315198473|gb|EFU28802.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus aureus subsp. aureus CGS01]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|317181711|dbj|BAJ59495.1| hypothetical protein HPF57_0421 [Helicobacter pylori F57]
          Length = 394

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I+ + I  F+N+    +    +  I  G+N  GK+N+LEA+  L
Sbjct: 2  IQSVRIKNFKNFKDTAIDGFTKLNIITGENNAGKSNLLEALYCL 45


>gi|1335781|gb|AAC47078.1| Cap [Drosophila melanogaster]
          Length = 1231

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 9/124 (7%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRA 59
           N++ IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R 
Sbjct: 30  NKMHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRP 89

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
                            A VE +   +D  + ++  +      + +  V+    D+   +
Sbjct: 90  EQRQSLLHEGTGARVISAYVEIIFDNSDNRVPIDKEE------IFLRRVIGAKKDQYFLN 143

Query: 120 LRIS 123
            ++ 
Sbjct: 144 KKVV 147



 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + +  +           AP  L DEI   LD   R A+  ++ ++     F
Sbjct: 1130 SGGQKSLVALALIFS-----IQKCDPAPFYLFDEIDQALDAMHRKAVANMIHELSDTAQF 1184

Query: 347  MTGTDKSVFDSLNETAKFMRI 367
            +T T     + L    KF  +
Sbjct: 1185 ITTT--FRPELLENAHKFYGV 1203


>gi|15672842|ref|NP_267016.1| DNA repair protein RecN [Lactococcus lactis subsp. lactis Il1403]
 gi|12723788|gb|AAK04958.1|AE006320_7 DNA repair protein RecN [Lactococcus lactis subsp. lactis Il1403]
 gi|326406407|gb|ADZ63478.1| DNA repair protein RecN [Lactococcus lactis subsp. lactis CV56]
          Length = 555

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 84/242 (34%), Gaps = 24/242 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I  F     + L F++  TI  G+ G GK+ I++A+S L  GR     + +D  R
Sbjct: 2   LQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGR-----ASSDFVR 56

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIR-- 111
            G+                     +E      D  I L      + R + +IN  ++   
Sbjct: 57  HGANKAEIEGLFFFDKTPELKAVLLELGFEEVDSEIILRREIFANGRSVCRINGQMVNLA 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            + ++ + L           + +  S  R    F D     I   ++ +  +F+ L +  
Sbjct: 117 TLRQVGELLVDIHGQHDSQELMNPKSHLRLLDEFGDEAFDQIKNNYKLKFENFKNLRQQL 176

Query: 170 NRLLTEGYFDSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
           N         +     +  +A+  E          +++N    L       ++     L+
Sbjct: 177 NLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDEQLVNRREKLNNIKNIADSLSSAYLA 236

Query: 228 LT 229
           L 
Sbjct: 237 LD 238


>gi|312869881|ref|ZP_07730020.1| DNA repair protein RecN [Lactobacillus oris PB013-T2-3]
 gi|311094466|gb|EFQ52771.1| DNA repair protein RecN [Lactobacillus oris PB013-T2-3]
          Length = 563

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 113/318 (35%), Gaps = 50/318 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L F  Q T+  G+ G GK+ I++A+  L+ GRG       +  R
Sbjct: 2   LQELTIDNLAIIKHLSLEFANQMTVLTGETGAGKSIIIDAVGLLAGGRG-----SQEFIR 56

Query: 67  IGSPSFF-----------STFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRV- 112
            G                   A ++  G+E      I +          +++N  +I   
Sbjct: 57  RGEEKLRLQGQFALTADPGLAALLDSLGIEYEDGTLIIMREIHRNGRNTIRVNGQLINTT 116

Query: 113 -VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDP---RHRRRMIDFERLMR 167
            + ++  +L           +      +    LD+     + P   ++++   D+ +L  
Sbjct: 117 MLRQIGAYLVDIQGQNEHQLLLQ--PEKHLGMLDQYASKQVQPLLTKYQQLYHDYSQL-- 172

Query: 168 GRNRLLTEGYFDSSWCSSIEA---QMAELGVKINIA-----------RVEMINALSSLIM 213
            +  +  +   +  W   ++    Q+ E+G     A           R+E    +++ + 
Sbjct: 173 -KAAVTKKQANEQQWAQRLDMLHYQVDEIGSAQLKADEEEQLTSERDRLEHFQQINNALQ 231

Query: 214 EYVQKENFPHIKL-----SLTGFLDG--KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
           + V   N     +     ++   ++G  +FD  + +L +      +  + + + + + L 
Sbjct: 232 QAVATFNDGEAPVLDQVATVMEAINGIAEFDDDYDSLSKSLNDAYYALQDVANQAGQQLD 291

Query: 267 GPHRSDLIVDYCDKAITI 284
                D  +   D+ +T+
Sbjct: 292 LLEFDDQRLAEIDQRLTV 309


>gi|237795888|ref|YP_002863440.1| chromosome segregation protein SMC [Clostridium botulinum Ba4
          str. 657]
 gi|229263914|gb|ACQ54947.1| chromosome segregation protein SMC [Clostridium botulinum Ba4
          str. 657]
          Length = 1193

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K + +  F+++A    LVF    T  VG NG GK+NI +A+   L     +  R + 
Sbjct: 1  MFLKSIEVRGFKSFADKTELVFKQGVTAIVGPNGSGKSNISDAVRWVLGEQSVKSLRGSK 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MEDVIFAGTQ 70


>gi|146304821|ref|YP_001192137.1| ATPase-like protein [Metallosphaera sedula DSM 5348]
 gi|145703071|gb|ABP96213.1| ATPase-like protein [Metallosphaera sedula DSM 5348]
          Length = 497

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 21/160 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF----LSPGRGFRRAS 60
           +++     + FR+  S+ L       + VG NG GKTN+L AI      LS G   R   
Sbjct: 4   LRLAEFYANNFRSLESVELRDVGGFNVIVGFNGYGKTNLLTAIYLYIKNLSAGIEKRSIE 63

Query: 61  YAD---VTRIGS---PSFFSTFARVEGMEGLAD--ISIKLETRDDRSVRCLQINDVVIRV 112
             +   +    S           R++  E   +  +   +    D   +   IN  +   
Sbjct: 64  DKNQEYLLMWNSYDTSKPILLGGRLQFSEKEVEKVVGKSMPMNIDLVNKLRYINGYLEWD 123

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152
           +D     +RI+  VPS D I      + ++ LD     ++
Sbjct: 124 LD----LIRINGSVPSKDEI-----DQAKKLLDYASSQVE 154


>gi|320169947|gb|EFW46846.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 631

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          ++  L +  F+ +  + L       I VG NG GKT IL AI  L   RG 
Sbjct: 14 RLHQLRLQNFKKFEDITLTLTPSPKIIVGANGSGKTQILWAI--LIFLRGH 62


>gi|281209070|gb|EFA83245.1| structural maintenance of chromosome protein [Polysphondylium
           pallidum PN500]
          Length = 1009

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I+ + +  F  +    +V         G+NG GK+ +L A+      +     R    AD
Sbjct: 167 IEKITLENFMCHKHFEIVLGPNVNFISGENGSGKSALLVALMVCLGAKAGTTNRGHKLAD 226

Query: 64  VTR---IGSPSF----FSTFARVEGMEGLADISIKLETRDDRSVRCL 103
           + +    G+ ++    F     +E     +  S   + +D    + +
Sbjct: 227 LVKTDSQGNEAYRHKEFGDSIIIERKIYKSGTSGGYKIKDATGKKTI 273


>gi|19074170|ref|NP_584776.1| CHROMOSOME SEGREGATION PROTEIN [Encephalitozoon cuniculi GB-M1]
 gi|19068812|emb|CAD25280.1| CHROMOSOME SEGREGATION PROTEIN [Encephalitozoon cuniculi GB-M1]
          Length = 1162

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 86/265 (32%), Gaps = 21/265 (7%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           + ++ + +  F++Y  +  +    + T  VG NG GK+N+++A+ F         R +S 
Sbjct: 1   MGLERIEVENFKSYLGVHVIGPFDRFTCIVGPNGSGKSNVMDAVMFCLGVGSRYLRGSSA 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
             +      +  S    +EG          +      S      N    R  + +     
Sbjct: 61  RSLINSKC-NHCSVTLYIEGCGERRSFQRHVNWEGRSSYFVDSENASYERFKEVVEGMNL 119

Query: 122 IS----WLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           +     +LV   D    G    ME  R  + M  ++           + +   + R+   
Sbjct: 120 LVDARNFLVFQGDVGVIGGMMPMELSRLFEEMSGSV---------KLKDVYEEKQRVQAR 170

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVE--MINALSSLIMEYVQKENFPHIKLSLTGFLD 233
              + +     + ++     +   AR +  +   L        ++     I++      D
Sbjct: 171 AVSECASLFEEKKEVMSRMKEAEEARAQEDVFRKLIERKHRIQEEMVLHEIQIRKARRKD 230

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMD 258
              + S    +    ++  D ++ +
Sbjct: 231 ADDEVSRLEAESRRMQEFMDDKERE 255


>gi|327184066|gb|AEA32513.1| DNA repair ATPase [Lactobacillus amylovorus GRL 1118]
          Length = 831

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 78/209 (37%), Gaps = 17/209 (8%)

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---ALSSLIM 213
           +++ +    +   N  + +    ++        +A+    +  AR ++ N      S   
Sbjct: 621 QQLHELNDQIAAANNEVRDLQQQNAQVQVKLNNLAD-STAVFEARQDLANTETNFESSSK 679

Query: 214 EYVQKENFPH-IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
           EY+        I  SL    + +F +   A KE Y   L  GR +D    + L    +  
Sbjct: 680 EYLANLLAAKWIGRSLDLASNERFPKMLKAAKE-YLALLTGGRYVDLELGKKLTVIRKD- 737

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
                  K   + + S G  + +   + LA    I +       +L+D+  A+ D+ +  
Sbjct: 738 ------GKKRDVKYLSRGTAEQLYFALKLAFVEQIKDEINLP--ILIDDSFANFDDHRIK 789

Query: 333 ALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
            + +++  I   +Q+ +    +++ + L 
Sbjct: 790 YIEQLLKKISENNQVLIFTAQENLVEKLG 818



 Score = 36.4 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 76/247 (30%), Gaps = 40/247 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +++K + +  F  ++       ++   +F G N  GK+  +  I  +  G   R  S   
Sbjct: 1   MRLKQIKMINFGQFSDKSFDLPSKEINVFFGANEAGKSTTVAFIKQIMFGFHLRSNSSPF 60

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  + SP   S     +  E   +       +  R +  ++ +  V+      +
Sbjct: 61  FEDYTPLAHV-SPMGGSLVFEADDGEYELERLYAKGDKTKRGILTVKKDGQVVPESLFFD 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR-------- 169
           +  +I     +   IF+   + +   L +    ++  +     +  +L+  R        
Sbjct: 120 QIQKIDGSFYADSFIFNQEMLGQVSSLSQE-NLLERIYYLGAANSGKLLEMRDGFEKEAG 178

Query: 170 ------------NRLLTEGYFDSSWC----------SSIEAQMAELGVKINIARVEMINA 207
                       NRLL +   D                ++  +     ++     + +  
Sbjct: 179 KLFKKTGKKPEVNRLLKQMEDDRDNLAQTQAEFDDYEELDRDLTAKSDELKSK-QQALEK 237

Query: 208 LSSLIME 214
           L     E
Sbjct: 238 LQKRAQE 244


>gi|322707989|gb|EFY99566.1| DNA repair protein Rad18, putative [Metarhizium anisopliae ARSEF
           23]
          Length = 1161

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 89/302 (29%), Gaps = 59/302 (19%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +  L +         VG+NG GK+ +L A++    G+     R  S   
Sbjct: 149 IESITCYNFMCHERLHVELGPLINFIVGENGSGKSAVLTALTLCLGGKASDTNRGGSLKS 208

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI------SIKLETRDDR--------SVRCLQINDVV 109
             + G     S   +++     A        SI +E    +             +I    
Sbjct: 209 FVKEGQDHG-SLVVKIKNAGSDAYQPDIYGDSILVERHFSKSGSSGFKIKNEQGRIISTK 267

Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRM 159
            + VDE+++   +    P        +   + S    ++ ++      +  +D  ++   
Sbjct: 268 KQEVDEISEWYALQMGNPLTVLSQDNARQFLNSATPAQKYKYFVSGVQLEQLDNDYKMSQ 327

Query: 160 IDFER--LMR------------------------GRNRLLTEGYFDSSWCSSIE-----A 188
              +R  ++R                         RN  L E                  
Sbjct: 328 DTLDRTIILRDDLSEKIAHVKKEMEDAQRLAETVQRNNTLRERARHYRNQLVWSQVVERE 387

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           Q  EL      AR + I  L     E  +  +    KL          ++ + A++E  A
Sbjct: 388 QELELQNTELEARKQKIIQLEKNCDELSRALDEITEKLERAEATRNGLNEEYRAIEESIA 447

Query: 249 KK 250
             
Sbjct: 448 SA 449


>gi|301063005|ref|ZP_07203570.1| chromosome segregation protein SMC [delta proteobacterium NaphS2]
 gi|300442886|gb|EFK07086.1| chromosome segregation protein SMC [delta proteobacterium NaphS2]
          Length = 1192

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          +KIK +++  F+++   L + F    +  VG NG GK+N+++AI +    +     R   
Sbjct: 1  MKIKQISVHGFKSFMERLEITFPTGISGVVGPNGCGKSNVVDAIRWCMGEQSPKQLRGRK 60

Query: 61 YADVTRIGS 69
            D+   G+
Sbjct: 61 MEDIIFSGA 69


>gi|162457056|ref|YP_001619423.1| putative OLD protein [Sorangium cellulosum 'So ce 56']
 gi|161167638|emb|CAN98943.1| putative old protein [Sorangium cellulosum 'So ce 56']
          Length = 824

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 70/429 (16%), Positives = 134/429 (31%), Gaps = 92/429 (21%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ---------HTIFVGDNGVGKTNILEAISFLSPGRG 55
           +++  + I  F++   L L   A+             VG+N VGK++ILEAI    PG G
Sbjct: 1   MRLSQVVIRRFKSIKELSLTIPARDERRQGSADFVSIVGENNVGKSSILEAIRLACPGSG 60

Query: 56  FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLET-----RDDRSVRC-LQINDVV 109
                               F  ++   G  ++ ++ +      ++  +VR  L ++  V
Sbjct: 61  ------KPTIDQ--------FRNLDPSIGPIEVELEFDRLTDADKEKHAVRVHLFVDHGV 106

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERR-RFLDRMVFAIDPRHRRR---------- 158
            +    + K  R   ++P     F+     R+ RF +                       
Sbjct: 107 EKYR--IKKVWRAPGVIPES---FAYSPDTRQYRFREWPDLKSKAEFANLGAEWKAIVDS 161

Query: 159 -------------MIDFERLMRGRNRLLTEGYFDSS------------------WCSSIE 187
                          ++ R     N  L E     S                  W  ++ 
Sbjct: 162 ADAAGSKKLSKPSKDNYLRAAVQMNSPLIEETEPWSPNPGGNLSNLDSVLPTVIWVPALR 221

Query: 188 AQMAEL--GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG-FLDGKFDQSFCALK 244
              AE     K +  R  +       + ++ +   F      L   F      +   +++
Sbjct: 222 ETGAEADVSEKQSAVRKIVNALFEQQLSKHDKVIRFRRAAEELEQLFASDGKHKIVASVE 281

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRS---DLIVDYCDKAITIA--HGSTGEQKVVLVGI 299
                KL +   + +  R T                 D  I+    H   G Q+ +++ +
Sbjct: 282 AHITSKLKELIDICADLRFTAPDVTADLASKTEFRVLDGNISTRPEHQGHGAQRSIVLAL 341

Query: 300 ---FLAHARLISNTTGFAPILLLDEISAHLDED----KRNALFRIVTDIGSQIFMTGTDK 352
              +    R+I ++     + L++E   +L  +     R+AL RI      Q+  T T  
Sbjct: 342 LQMWAEQLRIIGSSDASRTLFLIEEPEIYLHPEMCRRMRDALLRIAQSGIGQVVCT-THS 400

Query: 353 SVFDSLNET 361
            VF  L + 
Sbjct: 401 PVFLDLADR 409


>gi|139436971|ref|ZP_01771131.1| Hypothetical protein COLAER_00104 [Collinsella aerofaciens ATCC
           25986]
 gi|133776618|gb|EBA40438.1| Hypothetical protein COLAER_00104 [Collinsella aerofaciens ATCC
           25986]
          Length = 1159

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 124/366 (33%), Gaps = 47/366 (12%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYADVTRIGSPS-----FFS 74
           + F+   T+ VG NG GK+NI ++I   L     +  R  +  DV   GS +        
Sbjct: 1   MTFEPGLTVIVGPNGSGKSNISDSILWVLGEQSAKQLRGQAMEDVIFSGSSARKPVGVAE 60

Query: 75  TFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIRVVDE--------LNKHLRI 122
               ++  + +  +    + +  R  RS      IN    R++D         L K    
Sbjct: 61  VTLVLDNSDHMLPVDFDEVAITRRMYRSGESEYLINSSPCRLMDIQDILHDSGLGKDTHS 120

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
                 +D I      ERR  ++        +        ER ++    +          
Sbjct: 121 IISQGKLDAILQSRPEERRALIEEAAGISKHK-----RRKERALKKIKSMDEHLTRARDI 175

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
              I  Q+  L  +++ AR      LSS   E  Q      ++   + + D +      A
Sbjct: 176 NKEIARQLRPLERQVDRARKY--KELSSRANELTQMLAVDELRSLQSQWNDLESRSKEGA 233

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV---LVGI 299
            + E A+     ++ +              L V   +K + +     GEQ+     +VG 
Sbjct: 234 AELELAQYRLGEKERELEK-----------LQVMLEEKGLFVGDL--GEQRRHMQDVVGR 280

Query: 300 FLAHARLISNTTGFAPILLLDEISAHL--DEDKRNALFRIVTDIGSQI-FMTGTDKSVFD 356
             +  RL+    G   +  L ++   +   E +R  +   + D  +Q+  +TG      D
Sbjct: 281 INSDMRLL-EEKGHNMVSRLSDMRGQISSSEHQRRRVVEELEDARAQLEEVTGAHMQAQD 339

Query: 357 SLNETA 362
            ++   
Sbjct: 340 DVDAAG 345


>gi|124513128|ref|XP_001349920.1| chromosome segregation protein, putative [Plasmodium falciparum
           3D7]
 gi|75015734|sp|Q8IED2|SMC2_PLAF7 RecName: Full=Structural maintenance of chromosomes protein 2
 gi|23615337|emb|CAD52328.1| chromosome segregation protein, putative [Plasmodium falciparum
           3D7]
          Length = 1218

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + I+ + +  F++Y +  +   F  Q     G NG GK+N+L+AI F+         R  
Sbjct: 1   MYIEEIILDGFKSYPTKTVIGPFHPQFNAITGLNGSGKSNVLDAICFVMGINNLNLIRVN 60

Query: 60  SYADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
              ++  + G          ++         ++   RD +++   +
Sbjct: 61  RLDELIYKQGQAGITKGSVTIKFNNEEKPSPLQEPYRDMKNITITR 106


>gi|66517561|ref|XP_393700.2| PREDICTED: structural maintenance of chromosomes protein 3 [Apis
           mellifera]
          Length = 1202

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFKSYREQTVVEPFDPRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +   +D  + ++  +      + +  V+    D+   + R
Sbjct: 61  RQALLHEGTGPRVISAHVEIIFDNSDGRLPIDKEE------VYLRRVIGSKKDQYFLNKR 114

Query: 122 IS 123
           I 
Sbjct: 115 IV 116



 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QI 345
            S G++ +V + +  A           AP  L DEI   LD   R A+  ++ ++ S  Q 
Sbjct: 1101 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVADMIHELSSDAQ- 1154

Query: 346  FMTGTDKSVFDSLNETAKFMRIS 368
            F+T T     + L    KF  + 
Sbjct: 1155 FITTT--FRPELLQHANKFYGVK 1175


>gi|999380|gb|AAB34405.1| mitosis-specific chromosome segregation protein SMC1 homolog [Homo
           sapiens]
          Length = 1233

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|332295255|ref|YP_004437178.1| hypothetical protein Thena_0403 [Thermodesulfobium narugense DSM
           14796]
 gi|332178358|gb|AEE14047.1| hypothetical protein Thena_0403 [Thermodesulfobium narugense DSM
           14796]
          Length = 374

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 56/374 (14%), Positives = 117/374 (31%), Gaps = 59/374 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ +    F+ +    +    +  +  G N +GKT  LE I  L+  +            
Sbjct: 2   IENIEFENFKCFERFSVEKLQRVNLIGGKNNIGKTAFLEGIELLAKPKS----------- 50

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                            G     +  E    R ++       + +    +N+     +  
Sbjct: 51  -----------------GFGMCIVTSEILRRRQLKP----GFMPQTQSHINELDFDLFNS 89

Query: 127 PSMDRIFSGL-SMERRRFL---DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
              + I  G  S  + +F+   + +             +F  L     ++L      ++ 
Sbjct: 90  LGKEIIIKGDISEIKIKFIPAGEVIESQTIQSFLPNTFNFNPLAPQIFQVLPSNQPKTAS 149

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF-- 240
             S+E       + + +  +  IN  + L++    K   P++    +   D      F  
Sbjct: 150 VQSVEFSYNNETLAVPLQNIININNNNLLVIIRDSKHTLPNVNFISSCSTDETLLTEFYG 209

Query: 241 ---CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE--QK-- 293
                 KEE   +L +    + +  + + G + +   +   +    I   S GE   +  
Sbjct: 210 KVTELDKEEEIDRLINEFDENILKLKAIYGINSATFKLKLKNNNSLIPLSSFGEGINRYI 269

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV----TDIGSQIFMTG 349
            +L  I+ +              LL+DE    +       L+RI+         QIF T 
Sbjct: 270 AILCAIWASQ----------DGYLLIDEFENGIHYTNYQRLWRIIFETSKKANCQIFATT 319

Query: 350 TDKSVFDSLNETAK 363
             K   ++ NE  +
Sbjct: 320 HSKECIEAFNEANQ 333


>gi|322516542|ref|ZP_08069458.1| SMC family domain protein [Streptococcus vestibularis ATCC 49124]
 gi|322124930|gb|EFX96350.1| SMC family domain protein [Streptococcus vestibularis ATCC 49124]
          Length = 1177

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKSIEMQGFKSFADKTQVVFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+      ++      ++  +G       +I++E            I    +R
Sbjct: 61  MPDVIFAGTEVRKALNYAEVAVTLDNSDGFIAGAGETIRVERHIYRNGDNDYLIEGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    ERR   +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNAKPEERRAIFE 162


>gi|317179237|dbj|BAJ57025.1| hypothetical protein HPF30_0928 [Helicobacter pylori F30]
          Length = 394

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I+ + I  F+N+    +    +  I  G+N VGK+N+LEA+  L
Sbjct: 2  IQSVRIKNFKNFKDTTIDGFTKLNIITGENNVGKSNLLEALYCL 45


>gi|312863793|ref|ZP_07724031.1| RecF/RecN/SMC N-terminal domain protein [Streptococcus vestibularis
           F0396]
 gi|311101329|gb|EFQ59534.1| RecF/RecN/SMC N-terminal domain protein [Streptococcus vestibularis
           F0396]
          Length = 527

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A   ++VFD   T  VG NG GK+NI E++ +    S  +  R   
Sbjct: 1   MYLKSIEMQGFKSFADKTQVVFDKGVTAVVGPNGSGKSNITESLRWALGESSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRD-DRSVRCLQINDVVIR 111
             DV   G+      ++      ++  +G       +I++E            I    +R
Sbjct: 61  MPDVIFAGTEVRKALNYAEVAVTLDNSDGFIAGAGETIRVERHIYRNGDNDYLIEGRKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         L +          ++ IF+    ERR   +
Sbjct: 121 LRDIHDLFMDTGLGRDSFSIISQGRVEAIFNAKPEERRAIFE 162


>gi|283786951|ref|YP_003366816.1| hypothetical protein ROD_33381 [Citrobacter rodentium ICC168]
 gi|282950405|emb|CBG90054.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
          Length = 548

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          +K+  L ISEF+N  ++ + FD     T+ +G NG GK+N++EA+
Sbjct: 1  MKLDNLWISEFKNLKNINIDFDEGELVTVIIGWNGAGKSNVIEAL 45


>gi|269940726|emb|CBI49107.1| putative chromosome partition protein [Staphylococcus aureus subsp.
           aureus TW20]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|258434852|ref|ZP_05688926.1| condensin subunit Smc [Staphylococcus aureus A9299]
 gi|257849213|gb|EEV73195.1| condensin subunit Smc [Staphylococcus aureus A9299]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|256390521|ref|YP_003112085.1| SMC domain-containing protein [Catenulispora acidiphila DSM
          44928]
 gi|256356747|gb|ACU70244.1| SMC domain protein [Catenulispora acidiphila DSM 44928]
          Length = 422

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + I  + I  F+++    L      T+ +G N  GK+N+L+A+ FL+    
Sbjct: 1  MIITRIEIDGFKSFVDFSLDLHP-FTVLIGANASGKSNVLDAVRFLTTAVS 50


>gi|212695674|ref|ZP_03303802.1| hypothetical protein ANHYDRO_00191 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212677347|gb|EEB36954.1| hypothetical protein ANHYDRO_00191 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 246

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 27/176 (15%)

Query: 6   KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASY 61
           +++ + +  F+++    ++ F+ Q T  VG NG GK+NI +AI   L     +  R    
Sbjct: 5   RLESVELKGFKSFAERTKIKFNNQITAVVGPNGSGKSNIADAIKWVLGEQSVKSLRGKKM 64

Query: 62  ADVTRIGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            DV   GS             SF +    +     L  IS ++    D   R   +N   
Sbjct: 65  DDVIFQGSDQKKPMNMAEVNLSFDNKDRALSSDYDLVKISRRIYRNGDNEYR---LNGKR 121

Query: 110 IRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
           +R+ D         + K          +D I +  + ERR   +        ++RR
Sbjct: 122 VRLKDVKELFLDTGIGKEGYSVIGQGRIDEILNSSNQERRNIFEEASGIATHKYRR 177


>gi|311104368|ref|YP_003977221.1| DNA repair protein RecN [Achromobacter xylosoxidans A8]
 gi|310759057|gb|ADP14506.1| DNA repair protein RecN [Achromobacter xylosoxidans A8]
          Length = 551

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 91/254 (35%), Gaps = 34/254 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F       + F    ++F G+ G GK+ +++A++     RG      A + R
Sbjct: 2   LRTLHIRDFVIVEQTEIHFGPGFSVFSGETGAGKSILVDALALALGERG-----DASMLR 56

Query: 67  IGSPSFF---------STFARVEGMEGLADISIKLETRDDRSVR-CLQINDVV--IRVVD 114
            G+P               A ++  E  AD  + L    D   R    IN     +  + 
Sbjct: 57  EGAPRADITAVFDTPKGLVAWLQEREIDADAELSLRRVIDAQGRSRAYINGTPATVAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR--RRMIDFERLMRGRNRL 172
           EL   L       +   +    +   R  LD      + R+   +    +  L R     
Sbjct: 117 ELGDSLVDIHGQHAHQSLMRADAQ--RDLLDAHGGHGELRNAVGQAWKQWRALARQ---- 170

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           L     D++  ++   ++          +V+ ++ L+    E+   ++  H +LS +  L
Sbjct: 171 LEAAEKDAASLATERDRL--------QWQVDELDQLNLGPDEWDALQS-EHTRLSHSQSL 221

Query: 233 DGKFDQSFCALKEE 246
                Q   AL  E
Sbjct: 222 LDGATQIIDALDGE 235


>gi|149031310|gb|EDL86308.1| structural maintenance of chromosomes 1 like 1 (S. cerevisiae),
           isoform CRA_b [Rattus norvegicus]
          Length = 1233

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|94314407|ref|YP_587616.1| putative nucleoside triphosphate hydrolase domain-containing
           protein [Cupriavidus metallidurans CH34]
 gi|93358259|gb|ABF12347.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 598

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 61/384 (15%), Positives = 118/384 (30%), Gaps = 72/384 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           +K+K + IS FRN+  + +  D    + VG+N VGK+N+L A+  +   S     R    
Sbjct: 1   MKLKRIYISNFRNFEQIDVALD-GSVVVVGENRVGKSNLLFALRLILDPSLPDSAR---- 55

Query: 62  ADVTRIGSPSFF----------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-- 109
               ++G   F+               VE +E   D+ +     D       +++D    
Sbjct: 56  ----QLGQGDFWDGLGEPLEDERITVFVELIEFANDMDLLAVLTD------YRLDDDPDT 105

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
           +R+  E      ++    + +            F+     + + R    +       R  
Sbjct: 106 VRLTYEFRPIAGLAGFPQADED---------YEFICFGGESENKRFGHDVRR-----RVA 151

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
             LL          +                R   +  L       V  ++   ++  + 
Sbjct: 152 MDLLPALRDAEGDLAVW--------------RRSPLRPLLERAFAEVPSQDLGQVRDVVQ 197

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD-------LIVDYCDKAI 282
                  +       ++  + LF          +  +G   +D       L +       
Sbjct: 198 QATQQLAEFPTVQALQQRLRDLFVSMSGPKQDIQPALGFGTTDVTRLIRNLKLLIDGGLR 257

Query: 283 TIAHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDED-----KRNALFR 336
           TI   S G   V  + +  L   +L+S       +L ++E  AHL         R+    
Sbjct: 258 TIGDASLGSANVAFLTLKALELQQLMSENRRDHTVLAIEEPEAHLHPHLQRSVYRHLFED 317

Query: 337 IVTDIGSQI-FMTGTDKSVFDSLN 359
           +    G Q+  M  T      S+ 
Sbjct: 318 LAGAQGEQLSLMLTTHSPHIASVA 341


>gi|13928946|ref|NP_113871.1| structural maintenance of chromosomes protein 1A [Rattus
           norvegicus]
 gi|29336527|sp|Q9Z1M9|SMC1A_RAT RecName: Full=Structural maintenance of chromosomes protein 1A;
           Short=SMC protein 1A; Short=SMC-1A
 gi|4138416|emb|CAA06377.1| SMC-protein [Rattus norvegicus]
          Length = 1233

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|326381660|ref|ZP_08203354.1| hypothetical protein SCNU_01895 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199907|gb|EGD57087.1| hypothetical protein SCNU_01895 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 794

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 7   IKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           ++ + +  FR     A+L +      T+  G NG GK++  EA+ F   G+ +R +   
Sbjct: 44  VRSIAVEGFRGIGARATLNVSPRPGITVVSGRNGSGKSSFAEALEFAITGKSYRWSKDK 102


>gi|310825413|ref|YP_003957771.1| hypothetical protein STAUR_8189 [Stigmatella aurantiaca DW4/3-1]
 gi|309398485|gb|ADO75944.1| conserved uncharacterized protein [Stigmatella aurantiaca
          DW4/3-1]
          Length = 380

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++   + +  +RN+  + +  +++    VG N  GK+N L+AI FL
Sbjct: 1  MRFTRIRLENWRNFLDVDVPLESRV-FLVGPNASGKSNFLDAIRFL 45


>gi|297616629|ref|YP_003701788.1| DNA repair protein RecN [Syntrophothermus lipocalidus DSM 12680]
 gi|297144466|gb|ADI01223.1| DNA repair protein RecN [Syntrophothermus lipocalidus DSM 12680]
          Length = 584

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 77/240 (32%), Gaps = 36/240 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I        LRL F     +F G+ G GK+ +++A+  ++   G R ++   + R
Sbjct: 13  LREIYIRNLVLIEELRLEFGPGLNVFTGETGAGKSIVIDALGLIT---GERMSTD--LVR 67

Query: 67  IGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVR-CLQIND--VVIR 111
             S                      EG     D  + L      + R  ++IN   V + 
Sbjct: 68  DPSQKAVVEAVFSLENSSLKEYLGQEGFIEEEDDYLVLRREIGEAGRGTVRINGRTVTVS 127

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            +  L + L    L  +   +        R +LDR   +I+P  +     ++R    R  
Sbjct: 128 RLKSLGEFLVDIHLQQANQLLLE--PRMYRHYLDRFGSSINPLLQEVRRLYDRWHEKRKE 185

Query: 172 LLTEGYFDSSWCSSIE-----------AQMAE---LGVKINIARVEMINALSSLIMEYVQ 217
           L             ++           AQ+A      ++    R+     L     +   
Sbjct: 186 LDELVEGKKERLRELDFLQFQIKEIESAQLARGEDAELEERYRRLRDAERLRRGTEDIYS 245


>gi|292628155|ref|XP_002666865.1| PREDICTED: structural maintenance of chromosomes protein 1B-like
           [Danio rerio]
          Length = 1079

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 8/126 (6%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K L++  F+++     +    +    +G NG GK+N+++A+ F+   R    R     D
Sbjct: 4   LKQLDVENFKSWRGKQTIGPFKRFNCIIGTNGSGKSNVMDALGFVMGERAANLRVKHTRD 63

Query: 64  VTRIGSP--SFFSTFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           +   G+   +  STFA V  +  G  D  +    R         +N   +  + +    L
Sbjct: 64  LI-HGAHIGNPVSTFASVTMIYCGDNDEEMTFSRRISGESSEYLVNGKHV-TLAKYTGEL 121

Query: 121 RISWLV 126
           +   +V
Sbjct: 122 QKIGIV 127


>gi|290999839|ref|XP_002682487.1| structural maintenance of chromosome 1 [Naegleria gruberi]
 gi|284096114|gb|EFC49743.1| structural maintenance of chromosome 1 [Naegleria gruberi]
          Length = 1214

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          KI  +    F++Y     +      T  +G NG GK+N+++AISF+   R    R +   
Sbjct: 2  KIVRIEAENFKSYKGRQIIGPFDDFTCVIGPNGSGKSNLMDAISFVMGLRATYLRSSHLK 61

Query: 63 DVTRIG 68
           +   G
Sbjct: 62 QLIFNG 67


>gi|301782839|ref|XP_002926833.1| PREDICTED: structural maintenance of chromosomes protein 1A-like
           [Ailuropoda melanoleuca]
 gi|281339628|gb|EFB15212.1| hypothetical protein PANDA_016538 [Ailuropoda melanoleuca]
          Length = 1233

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|284036606|ref|YP_003386536.1| SMC domain protein [Spirosoma linguale DSM 74]
 gi|283815899|gb|ADB37737.1| SMC domain protein [Spirosoma linguale DSM 74]
          Length = 378

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          + I  L++  F+ +  L + F    T+  G N  GK++++ AI  +   RGF
Sbjct: 1  MLINSLSLKNFKCFEELDVKFAP-ITLLTGANSSGKSSLINAILAVLQTRGF 51


>gi|258613892|ref|NP_062684.2| structural maintenance of chromosomes protein 1A [Mus musculus]
 gi|123220915|emb|CAM23830.1| structural maintenance of chromosomes 1A [Mus musculus]
 gi|124297187|gb|AAI31668.1| Structural maintenance of chromosomes 1A [Mus musculus]
          Length = 1233

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|30172566|ref|NP_777039.1| structural maintenance of chromosomes protein 1A [Bos taurus]
 gi|311276328|ref|XP_003135172.1| PREDICTED: structural maintenance of chromosomes protein 1A-like
           [Sus scrofa]
 gi|29336595|sp|O97593|SMC1A_BOVIN RecName: Full=Structural maintenance of chromosomes protein 1A;
           Short=SMC protein 1A; Short=SMC-1A
 gi|4235253|gb|AAD13141.1| SMC1 protein [Bos taurus]
 gi|296470682|gb|DAA12797.1| structural maintenance of chromosomes protein 1A [Bos taurus]
          Length = 1233

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|309805556|ref|ZP_07699601.1| RecF/RecN/SMC N-terminal domain protein [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165207|gb|EFO67445.1| RecF/RecN/SMC N-terminal domain protein [Lactobacillus iners
           LactinV 09V1-c]
          Length = 296

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A    + F+   T  VG NG GK+N+ EAI ++      +  R  +
Sbjct: 1   MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+   GS           G    A++ +  +  D    R L ++   + ++  + +  
Sbjct: 61  MRDIIFAGSE--------FRGPLNKAEVCLIFDNHD----RQLHLDSDKVAIMRRILRSG 108

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
              + + +           R  F+D  +  
Sbjct: 109 DSEYFINNQSVRLK---DIRTLFVDSGLSQ 135


>gi|258423925|ref|ZP_05686810.1| chromosome segregation protein SMC [Staphylococcus aureus A9635]
 gi|257845954|gb|EEV69983.1| chromosome segregation protein SMC [Staphylococcus aureus A9635]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|47459245|ref|YP_016107.1| segregation of chromosomes protein [Mycoplasma mobile 163K]
 gi|47458574|gb|AAT27896.1| segregation of chromosomes protein [Mycoplasma mobile 163K]
          Length = 974

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 60/164 (36%), Gaps = 24/164 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K+  +    F+++A  + L FD      VG NG GK+NI +AI ++   + F   R  +
Sbjct: 1   MKLIKIEAKGFKSFADGITLNFDGGIVGIVGPNGSGKSNINDAIRWVLGEQSFKALRGDN 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLAD---------ISIKLETRDDRSVRCLQINDVVI 110
             DV   GS +      A V      +D         I+I       +      +N  + 
Sbjct: 61  MEDVIFAGSKTAEAQDKAEVTLTFDNSDYSLKQFDKTITISRVVERGKGNNLYFVNGEIA 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLD 145
           R  D +      S +  S   I S             ERR+  +
Sbjct: 121 RHKD-IKDIAVESGMSKSSLAIISQGTISEIAQASPEERRKIFE 163


>gi|57651803|ref|YP_186109.1| chromosome segregation SMC protein, putative [Staphylococcus aureus
           subsp. aureus COL]
 gi|87160811|ref|YP_493824.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194941|ref|YP_499741.1| SMC domain-containing protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|151221356|ref|YP_001332178.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509406|ref|YP_001575065.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221142024|ref|ZP_03566517.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|258452532|ref|ZP_05700538.1| chromosome segregation protein SMC [Staphylococcus aureus A5948]
 gi|262051863|ref|ZP_06024079.1| chromosome segregation SMC protein [Staphylococcus aureus 930918-3]
 gi|282920017|ref|ZP_06327746.1| chromosome segregation protein SMC [Staphylococcus aureus A9765]
 gi|294848228|ref|ZP_06788975.1| chromosome segregation protein SMC [Staphylococcus aureus A9754]
 gi|304381202|ref|ZP_07363855.1| SMC family domain protein [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|57285989|gb|AAW38083.1| chromosome segregation SMC protein, putative [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126785|gb|ABD21299.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202499|gb|ABD30309.1| SMC family, C-terminal domain family [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|150374156|dbj|BAF67416.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368215|gb|ABX29186.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|257859750|gb|EEV82592.1| chromosome segregation protein SMC [Staphylococcus aureus A5948]
 gi|259160264|gb|EEW45292.1| chromosome segregation SMC protein [Staphylococcus aureus 930918-3]
 gi|282594733|gb|EFB99717.1| chromosome segregation protein SMC [Staphylococcus aureus A9765]
 gi|294825028|gb|EFG41450.1| chromosome segregation protein SMC [Staphylococcus aureus A9754]
 gi|302751057|gb|ADL65234.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340185|gb|EFM06126.1| SMC family domain protein [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|320140950|gb|EFW32797.1| segregation protein SMC [Staphylococcus aureus subsp. aureus
           MRSA131]
 gi|320144335|gb|EFW36101.1| segregation protein SMC [Staphylococcus aureus subsp. aureus
           MRSA177]
 gi|329313903|gb|AEB88316.1| Chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329724768|gb|EGG61273.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733654|gb|EGG69982.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|49481989|gb|AAT66706.1| DNA repair and genetic recombination protein [Geobacillus
           thermoglucosidasius]
          Length = 573

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 93/280 (33%), Gaps = 51/280 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G        A +EG+           +  A++ I +                   ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLDNENHPCYDKCAEVGIDISEGMVVLRREIFANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD----RMVFAIDPRHRRRMID 161
            ++   ++ ++   L           +           LD      + A    +R     
Sbjct: 112 KLVTTAILRDIGSTLVDIHGQHEHQELM--DPSRHLPLLDEYGGEEIAAALEEYRAVYEK 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210
           +E+L +   +L       +     +  Q+ E+           ++   +V+++N   +  
Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQVNEDEQLMEEKVKIMNFQKIYE 229

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247
            +    +  +  H  L   G      +       ALKE Y
Sbjct: 230 ALKHSYEALSGEHRGLDWIGLAMSHLEDVTSISPALKEAY 269


>gi|85111143|ref|XP_963793.1| hypothetical protein NCU09065 [Neurospora crassa OR74A]
 gi|28925527|gb|EAA34557.1| predicted protein [Neurospora crassa OR74A]
          Length = 1138

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RRA 59
            I  + + +F  Y            + +G NG GK++++ AI     G GF      R  
Sbjct: 71  AIVRVKLKDFVTYNEAEFFLGPSLNMVIGPNGTGKSSLVCAICL---GLGFPSSVLGRAT 127

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELN 117
           +  +  + G          ++G  G  +  + L    + +     IN      + V +L 
Sbjct: 128 AVGEFVKHGKDEA-RIEVELQGKPGEDNYVVGLLIIRETNKTRFTINREQATHKEVRQLM 186

Query: 118 KHLRISW 124
           K LRI  
Sbjct: 187 KSLRIQI 193


>gi|330808454|ref|YP_004352916.1| chromosome partition protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376562|gb|AEA67912.1| Putative chromosome partition protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1162

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 106/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 AKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAEAAKKYQEYKGEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++        G+ +      +  +   + + R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNEQVGQREAIIGNQEVSFEALVAEQRNADAAIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|298694527|gb|ADI97749.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|262048132|ref|ZP_06021019.1| chromosome segregation SMC protein [Staphylococcus aureus D30]
 gi|259163698|gb|EEW48253.1| chromosome segregation SMC protein [Staphylococcus aureus D30]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|295399111|ref|ZP_06809093.1| DNA repair protein RecN [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110286|ref|YP_003988602.1| DNA repair protein RecN [Geobacillus sp. Y4.1MC1]
 gi|294978577|gb|EFG54173.1| DNA repair protein RecN [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215387|gb|ADP73991.1| DNA repair protein RecN [Geobacillus sp. Y4.1MC1]
          Length = 573

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 93/280 (33%), Gaps = 51/280 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G        A +EG+           +  A++ I +                   ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLDNENHPCYDKCAEVGIDISEGMVVLRREIFANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMID 161
            ++   ++ ++   L           +           LD      + A    +R     
Sbjct: 112 KLVTTAILRDIGSTLVDIHGQHEHQELM--DPSRHLPLLDEYGGAEIAAALEEYRAVYEK 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210
           +E+L +   +L       +     +  Q+ E+           ++   +V+++N   +  
Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQVNEDEQLMEEKVKIMNFQKIYE 229

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247
            +    +  +  H  L   G      +       ALKE Y
Sbjct: 230 ALKHSYEALSGEHRGLDWIGLAMSHLEDVTSISPALKEAY 269


>gi|329921149|ref|ZP_08277671.1| chromosome segregation protein SMC [Lactobacillus iners SPIN 1401G]
 gi|328934787|gb|EGG31278.1| chromosome segregation protein SMC [Lactobacillus iners SPIN 1401G]
          Length = 1185

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A    + F+   T  VG NG GK+N+ EAI ++      +  R  +
Sbjct: 1   MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+   GS           G    A++ +  +  D    R L ++   + ++  + +  
Sbjct: 61  MRDIIFAGSE--------FRGPLNKAEVCLIFDNHD----RQLHLDSDKVAIMRRILRSG 108

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
              + + +           R  F+D  +  
Sbjct: 109 DSEYFINNQSVRLK---DIRTLFVDSGLSQ 135


>gi|309806874|ref|ZP_07700861.1| RecF/RecN/SMC N-terminal domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308166740|gb|EFO68932.1| RecF/RecN/SMC N-terminal domain protein [Lactobacillus iners
           LactinV 03V1-b]
          Length = 243

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A    + F+   T  VG NG GK+N+ EAI ++      +  R  +
Sbjct: 1   MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+   GS           G    A++ +  +  D    R L ++   + ++  + +  
Sbjct: 61  MRDIIFAGSE--------FRGPLNKAEVCLIFDNHD----RQLHLDSDKVAIMRRILRSG 108

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
              + + +           R  F+D  +  
Sbjct: 109 DSEYFINNQSVRLK---DIRTLFVDSGLSQ 135


>gi|300865817|ref|ZP_07110567.1| condensin subunit Smc [Oscillatoria sp. PCC 6506]
 gi|300336183|emb|CBN55722.1| condensin subunit Smc [Oscillatoria sp. PCC 6506]
          Length = 1284

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + ++ F+++  +  +      T+  G NG GK+NIL+A+ F   LS  +G R   
Sbjct: 29  VHIKRVELTNFKSFGGTTAIPLLPGFTVVSGPNGSGKSNILDALLFCLGLSTSKGMRAER 88

Query: 61  YADVTRIGSPSFFSTFARV 79
             D+         +  A V
Sbjct: 89  LPDLVNNAQNKRGTVEASV 107


>gi|256544905|ref|ZP_05472276.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399404|gb|EEU13010.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
          Length = 1176

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 27/176 (15%)

Query: 6   KIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASY 61
           +++ + +  F+++A+  ++ FD Q T  VG NG GK+NI +AI   L     +  R    
Sbjct: 5   RLESVELKGFKSFANRTKIKFDNQITAVVGPNGSGKSNIADAIKWVLGEQSVKSLRGKKM 64

Query: 62  ADVTRIGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            DV   G+             SF +    +     L  IS ++    D   R   +N   
Sbjct: 65  DDVIFQGADDKKPMNMAEVNLSFNNKDRALSSDYDLVKISRRIFRNGDNEYR---LNGKR 121

Query: 110 IRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
           +R+ D         + K          +D I +  + ERR   +        ++RR
Sbjct: 122 VRLKDIKELFLDTGIGKEGYSVIGQGRIDEILNSSNQERRNIFEEASGIATHKYRR 177


>gi|30581135|ref|NP_006297.2| structural maintenance of chromosomes protein 1A [Homo sapiens]
 gi|296235557|ref|XP_002762949.1| PREDICTED: structural maintenance of chromosomes protein 1A
           [Callithrix jacchus]
 gi|29336622|sp|Q14683|SMC1A_HUMAN RecName: Full=Structural maintenance of chromosomes protein 1A;
           Short=SMC protein 1A; Short=SMC-1-alpha; Short=SMC-1A;
           AltName: Full=Sb1.8
 gi|20521836|dbj|BAA11495.2| KIAA0178 [Homo sapiens]
 gi|57209018|emb|CAI42089.1| structural maintenance of chromosomes 1A [Homo sapiens]
 gi|57210025|emb|CAI42646.1| structural maintenance of chromosomes 1A [Homo sapiens]
 gi|85567570|gb|AAI12128.1| SMC1 structural maintenance of chromosomes 1-like 1 [Homo sapiens]
 gi|119613556|gb|EAW93150.1| SMC1 structural maintenance of chromosomes 1-like 1 (yeast),
           isoform CRA_b [Homo sapiens]
 gi|168278535|dbj|BAG11147.1| structural maintenance of chromosomes protein 1A [synthetic
           construct]
 gi|313883910|gb|ADR83441.1| structural maintenance of chromosomes 1A [synthetic construct]
          Length = 1233

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|284024158|ref|ZP_06378556.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus 132]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|282916484|ref|ZP_06324246.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus D139]
 gi|282319924|gb|EFB50272.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus D139]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|253996454|ref|YP_003048518.1| chromosome segregation protein SMC [Methylotenera mobilis JLW8]
 gi|253983133|gb|ACT47991.1| chromosome segregation protein SMC [Methylotenera mobilis JLW8]
          Length = 1182

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 117/360 (32%), Gaps = 57/360 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L +S F+++     L    Q    VG NG GK+N++E++ ++   S  +  R  +
Sbjct: 1   MRLTHLKLSGFKSFVDPTTLHIHGQRVGVVGPNGCGKSNVMESVRWVLGESSAKEMRADA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGM-EGLADISIKLETRDDRSVRCLQIND 107
              V   GS +            F ++     G     A+IS+K     D+      IN+
Sbjct: 61  MDAVIFNGSGNRKPISRASVELVFDNSLGSAAGEWSQYAEISVKRVIERDKGS-TYYINN 119

Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF---------- 149
            V+R  D         L           ++ RI      E R FL+              
Sbjct: 120 SVVRRRDVADLFLGTGLGGRAYAIIGQNTISRIVEARPEEMRVFLEEAAGVSKYKERRKE 179

Query: 150 --AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ-----MAELGVKINIAR- 201
                   R  ++  E ++R  +  +      +   +          M +  + +   R 
Sbjct: 180 TEQRLRDTRENLLRVEDILRELDTQIVRLQSQAVVAAQYNQMQQALNMTKAQIWLLKKRD 239

Query: 202 --------VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
                      + AL + +   +         L           ++  A +  Y +   +
Sbjct: 240 ASAQWEKSQRAVEALVNALEAQMASLRHSENTLETLKQQHVASSEAVNAAQAAYYEANAE 299

Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL-VGIFLAHARLISNTTG 312
              +++  + T     R  L +     ++ +   +  +Q+ ++     LA A L+    G
Sbjct: 300 VSNLENQVQNTAD--ARDRLQIQLHQLSVQLEKNA--QQRSLVDSAYALAQAELVQANAG 355



 Score = 38.7 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 7/146 (4%)

Query: 199  IARVEMINALSSLIMEYVQKENFPHIKL--SLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             +R + I++    + E  +       K+       L   FD++     E +      G+ 
Sbjct: 992  QSRKQYIDSQCQDLTEASKTLEDAIYKIDRETRSRLQHTFDEANKHFNELFTTLFGGGQA 1051

Query: 257  MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
               M    ++             K  TI   S GE+ +  + +  A  RL       AP 
Sbjct: 1052 KLEMLGDEILDTGMQVFAQPPGKKNSTIHLLSGGEKALTALALVFALFRL-----NPAPF 1106

Query: 317  LLLDEISAHLDEDKRNALFRIVTDIG 342
             L+DE+ A LD+        +V  + 
Sbjct: 1107 CLMDEVDAPLDDSNTERFCAMVQKMS 1132


>gi|288940004|ref|YP_003442244.1| SMC domain-containing protein [Allochromatium vinosum DSM 180]
 gi|288895376|gb|ADC61212.1| SMC domain protein [Allochromatium vinosum DSM 180]
          Length = 403

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 124/366 (33%), Gaps = 53/366 (14%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ + +  F++    +L   A  T  +G NG GK+ +L+AI F+S    F+      V+
Sbjct: 10  RLRSIYVDNFKSLVDFQLSLAA-FTCLIGLNGSGKSTVLQAIDFISRL--FKGN----VS 62

Query: 66  RIGSPSFFSTFARVEGMEGLAD--ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +      +        + G ++  +SI L   D         N  ++R   E  K    +
Sbjct: 63  QWLEQRQWKPGDINSKLSGKSNLKLSIDLSGADGNFSWDCSFNRSLLRCTQETVKLNGKT 122

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            L  +    + G                D  H    +   ++       +     D    
Sbjct: 123 LLSVADGHYWFG----------------DVVHAGATVARTKVAFEYEGSILSQLKDEVLP 166

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL---SLTGFLDGKFDQSF 240
             +      L +K  + +   ++ L+  ++     ++   + +    L+ FL    D+  
Sbjct: 167 KPL------LPLKRFLQQTASLDLLAPQLLRKRAAQSQGELGMGGERLSAFLSELSDEQR 220

Query: 241 CALKEEYAKK---LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI--TIAHGSTGEQKVV 295
             L  +       L         +    +G     +   + DK +     H + G  +++
Sbjct: 221 LTLGSQLKTAYPHLEQFVTRSLRAGWKELG-----IREQFGDKGLYTEARHINDGMLRLM 275

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
            +         ++        LL DEI   ++ +    L  ++ +   QI +T     + 
Sbjct: 276 AI---------LAEILTDHQFLLFDEIENGINPELVEFLLDVLVNAHQQILVTTHSPMIL 326

Query: 356 DSLNET 361
           + L+++
Sbjct: 327 NYLDDS 332


>gi|224102947|ref|XP_002312865.1| condensin complex components subunit [Populus trichocarpa]
 gi|222849273|gb|EEE86820.1| condensin complex components subunit [Populus trichocarpa]
          Length = 1205

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 5   IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y        F  +    VG NG GKTN   AI   LS      R   
Sbjct: 1   MHIKQVIIEGFKSYREQIATEPFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRNDD 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                          A VE +   +D  I ++  + R  R + +  
Sbjct: 61  RHQLLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKK 106



 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 17/211 (8%)

Query: 144  LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
             +  +      +++ +  +      R  L        +   + + ++ EL   ++  + E
Sbjct: 963  CNEQLQQFSHVNKKALDQYVNFTEQREELQKR----QAELEAGDEKIRELISALDQRKDE 1018

Query: 204  MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
             I      +  + ++     ++    G       +       +        R+ D   R 
Sbjct: 1019 SIERTFKGVARHFREVFSELVQ---GGHGHLVMMKKKDGDHGDDDYDDDGPREADLEGRV 1075

Query: 264  TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
                  +  +      +  ++   S G++ VV + +  A           AP  L DEI 
Sbjct: 1076 EKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFA-----IQRCDPAPFYLFDEID 1130

Query: 324  AHLDEDKRNALFRIVTDI----GSQIFMTGT 350
            A LD   R A+  ++  +     +Q F+T T
Sbjct: 1131 AALDPQYRTAVGNMIRRLADMANTQ-FITTT 1160


>gi|74177551|dbj|BAB31016.3| unnamed protein product [Mus musculus]
          Length = 301

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|82750838|ref|YP_416579.1| chromosome segregation SMC protein [Staphylococcus aureus RF122]
 gi|82656369|emb|CAI80787.1| chromosome segregation SMC protein [Staphylococcus aureus RF122]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|29336930|sp|Q9CU62|SMC1A_MOUSE RecName: Full=Structural maintenance of chromosomes protein 1A;
           Short=SMC protein 1A; Short=SMC-1-alpha; Short=SMC-1A;
           AltName: Full=Chromosome segregation protein SmcB;
           AltName: Full=Sb1.8
 gi|4689088|gb|AAD27753.1|AF047600_1 chromosome segregation protein SmcB [Mus musculus]
          Length = 1233

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|21282846|ref|NP_645934.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486073|ref|YP_043294.1| putative chromosome partition protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|297208122|ref|ZP_06924553.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300912202|ref|ZP_07129645.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204285|dbj|BAB94982.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49244516|emb|CAG42945.1| putative chromosome partition protein [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|296887365|gb|EFH26267.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300886448|gb|EFK81650.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus aureus subsp. aureus TCH70]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|116511620|ref|YP_808836.1| condensin subunit Smc [Lactococcus lactis subsp. cremoris SK11]
 gi|116107274|gb|ABJ72414.1| condensin subunit Smc [Lactococcus lactis subsp. cremoris SK11]
          Length = 1174

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 98/287 (34%), Gaps = 42/287 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I  F+++A   ++ FD   T  VG NG GK+NI+EA+ ++      +  R   
Sbjct: 1   MYLKKMEIVGFKSFADKTKVEFDKGITAVVGPNGSGKSNIVEALRWVLGEQSAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFAR-------VEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G+      ++    A        ++G +   ++ I              +N  
Sbjct: 61  MPDVIFAGTEKRKALNYAEVIAHFDNSDHYLQGQDEQEEVVITRRLY-RNGDSEFLMNGR 119

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R + +++     + L      I S             ERR   +     +        
Sbjct: 120 KCR-LRDIHDLFTDTGLGRDSLSIISQGRIESVFNSKPEERRAIFEEAAGVL-------- 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
               +    RN   ++          +E  + EL  ++   + +   AL    +E V+ +
Sbjct: 171 ----KYKNRRNETESKLNSTQDNLDRLEDIIFELNSQLVPLQSQRDVALRFQELEAVRSD 226

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKE---EYAKKLFDGRKMDSMSRR 263
               + +        ++DQ+   L E   E  +     ++ D    +
Sbjct: 227 LSLAVLVGQLETKKARYDQTELDLAEVVTELKQLSARKKEYDEQVGQ 273


>gi|67482463|ref|XP_656581.1| structural maintenance of chromosomes protein [Entamoeba
           histolytica HM-1:IMSS]
 gi|56473794|gb|EAL51197.1| structural maintenance of chromosomes protein [Entamoeba
           histolytica HM-1:IMSS]
          Length = 1197

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 6   KIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           +I  L +++F++Y    ++ +       +G NG GK+N+++AISF+   +    R ++  
Sbjct: 3   RIDKLTLTDFKSYKGTHVIPEFHNFQAVIGPNGAGKSNLMDAISFVLGVKVGLLRGSNLK 62

Query: 63  DVTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
           D+                 ++   G  +      T  +      +I+  V+ 
Sbjct: 63  DLIHDDPTMENPPSRAIVELQLKHGNGETKRYSRTILESGSSEYRIDGSVVS 114


>gi|15924224|ref|NP_371758.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15926817|ref|NP_374350.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus N315]
 gi|148267725|ref|YP_001246668.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393783|ref|YP_001316458.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156979555|ref|YP_001441814.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|253315592|ref|ZP_04838805.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255006021|ref|ZP_05144622.2| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795710|ref|ZP_05644689.1| chromosome segregation protein SMC [Staphylococcus aureus A9781]
 gi|258415934|ref|ZP_05682204.1| condensin subunit SMC [Staphylococcus aureus A9763]
 gi|258419681|ref|ZP_05682648.1| chromosome segregation protein SMC [Staphylococcus aureus A9719]
 gi|258444572|ref|ZP_05692901.1| condensin subunit Smc [Staphylococcus aureus A8115]
 gi|258447595|ref|ZP_05695739.1| chromosome segregation protein SMC [Staphylococcus aureus A6300]
 gi|258449437|ref|ZP_05697540.1| condensin subunit Smc [Staphylococcus aureus A6224]
 gi|258454816|ref|ZP_05702780.1| condensin subunit Smc [Staphylococcus aureus A5937]
 gi|269202850|ref|YP_003282119.1| chromosome segregation SMC protein, putative [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282892721|ref|ZP_06300956.1| chromosome segregation protein SMC [Staphylococcus aureus A8117]
 gi|282927575|ref|ZP_06335191.1| chromosome segregation protein SMC [Staphylococcus aureus A10102]
 gi|295407173|ref|ZP_06816974.1| chromosome segregation protein SMC [Staphylococcus aureus A8819]
 gi|296274791|ref|ZP_06857298.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297245940|ref|ZP_06929799.1| chromosome segregation protein SMC [Staphylococcus aureus A8796]
 gi|13701034|dbj|BAB42329.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus N315]
 gi|14247004|dbj|BAB57396.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|147740794|gb|ABQ49092.1| condensin subunit Smc [Staphylococcus aureus subsp. aureus JH9]
 gi|149946235|gb|ABR52171.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156721690|dbj|BAF78107.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|257789682|gb|EEV28022.1| chromosome segregation protein SMC [Staphylococcus aureus A9781]
 gi|257839270|gb|EEV63744.1| condensin subunit SMC [Staphylococcus aureus A9763]
 gi|257844266|gb|EEV68648.1| chromosome segregation protein SMC [Staphylococcus aureus A9719]
 gi|257850065|gb|EEV74018.1| condensin subunit Smc [Staphylococcus aureus A8115]
 gi|257853786|gb|EEV76745.1| chromosome segregation protein SMC [Staphylococcus aureus A6300]
 gi|257857425|gb|EEV80323.1| condensin subunit Smc [Staphylococcus aureus A6224]
 gi|257863199|gb|EEV85963.1| condensin subunit Smc [Staphylococcus aureus A5937]
 gi|262075140|gb|ACY11113.1| chromosome segregation SMC protein, putative [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590578|gb|EFB95655.1| chromosome segregation protein SMC [Staphylococcus aureus A10102]
 gi|282764718|gb|EFC04843.1| chromosome segregation protein SMC [Staphylococcus aureus A8117]
 gi|285816916|gb|ADC37403.1| Chromosome partition protein smc [Staphylococcus aureus 04-02981]
 gi|294968026|gb|EFG44054.1| chromosome segregation protein SMC [Staphylococcus aureus A8819]
 gi|297177104|gb|EFH36358.1| chromosome segregation protein SMC [Staphylococcus aureus A8796]
 gi|312829628|emb|CBX34470.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315131027|gb|EFT87011.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727398|gb|EGG63854.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|302332838|gb|ADL23031.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|283770296|ref|ZP_06343188.1| chromosome segregation protein [Staphylococcus aureus subsp. aureus
           H19]
 gi|283460443|gb|EFC07533.1| chromosome segregation protein [Staphylococcus aureus subsp. aureus
           H19]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|288934510|ref|YP_003438569.1| hypothetical protein Kvar_1634 [Klebsiella variicola At-22]
 gi|288889219|gb|ADC57537.1| conserved hypothetical protein [Klebsiella variicola At-22]
          Length = 594

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 62/361 (17%), Positives = 114/361 (31%), Gaps = 63/361 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           ++I  + +  F N++ + +       + VG+N VGK+N +  +   L PG   R      
Sbjct: 1   MRISRIRLINFANFSDVDVETGESI-VIVGENKVGKSNFIRGLQLILDPGLSER---DRQ 56

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +   G   F+      E +    +IS+ L    D +                L  HL   
Sbjct: 57  L---GFEHFWDGLGE-EKLGETIEISVDLTDFTDDA---------------RLMAHLNDC 97

Query: 124 WLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            L P       G  M  R   RF  +      P     + D+E ++         G  D 
Sbjct: 98  VLNP-------GPPMVARLTYRFQPKTELNRAP---ESLKDYEYVI--------FGGADP 139

Query: 181 SW--------CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSL-T 229
                        I+ Q A    +  ++  R   +  L   +   +  E    I+  +  
Sbjct: 140 DMHIGGAFRRMLPIDVQGALRDAEKDLSSWRNSPLRPLIEELSASLDDETREKIQTQVDE 199

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL-IGPHRSD-----LIVDYCDKAIT 283
              +        A  E  +++L            +L + P R D     L +        
Sbjct: 200 AQRELADHDEVAATAERISERLIAIAGKQHAVPVSLGLAPTRVDALLRSLRLLLDSGIRG 259

Query: 284 IAHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           I   S G   ++ + +  L   RL+ +        +++E  AHL    +  ++R      
Sbjct: 260 IGDASLGTANLIFLALKSLELDRLVDDGERDHTFFVVEEPEAHLHPHVQRLVYRYFLGTD 319

Query: 343 S 343
            
Sbjct: 320 G 320


>gi|49481987|gb|AAT66705.1| DNA repair and genetic recombination protein [Geobacillus
           thermoglucosidasius]
          Length = 573

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 93/280 (33%), Gaps = 51/280 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G        A +EG+           +  A++ I +                   ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLDNENHPCYDKCAEVGIDISEGMVVLRREIFANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD----RMVFAIDPRHRRRMID 161
            ++   ++ ++   L           +           LD      + A    +R     
Sbjct: 112 KLVTTAILRDIGSTLVDIHGQHEHQELM--DPSRHLPLLDEYGGEEIAAALEEYRAVYEK 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210
           +E+L +   +L       +     +  Q+ E+           ++   +V+++N   +  
Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQVNEDEQLMEEKVKIMNFQKIYE 229

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247
            +    +  +  H  L   G      +       ALKE Y
Sbjct: 230 ALKHSYEALSGEHRGLDWIGLAMSHLEDVTSISPALKEAY 269


>gi|116754779|ref|YP_843897.1| SMC domain-containing protein [Methanosaeta thermophila PT]
 gi|116666230|gb|ABK15257.1| SMC domain protein [Methanosaeta thermophila PT]
          Length = 1061

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +  L +  F+ Y    + F    T  +G NG GK+ I+EAI++   G
Sbjct: 1  MHLNRLVLRNFKKYRRADITFQDGLTGIIGGNGAGKSTIVEAIAWALYG 49


>gi|259501534|ref|ZP_05744436.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302191493|ref|ZP_07267747.1| chromosome segregation protein SMC [Lactobacillus iners AB-1]
 gi|259167052|gb|EEW51547.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
          Length = 1185

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A    + F+   T  VG NG GK+N+ EAI ++      +  R  +
Sbjct: 1   MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+   GS           G    A++ +  +  D    R L ++   + ++  + +  
Sbjct: 61  MRDIIFAGSE--------FRGPLNKAEVCLIFDNHD----RQLHLDSDKVAIMRRILRSG 108

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
              + + +           R  F+D  +  
Sbjct: 109 DSEYFINNQSVRLK---DIRTLFVDSGLSQ 135


>gi|91784005|ref|YP_559211.1| ATP-dependent endonuclease [Burkholderia xenovorans LB400]
 gi|91687959|gb|ABE31159.1| Predicted ATP-dependent endonuclease, OLD family [Burkholderia
          xenovorans LB400]
          Length = 782

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          + +K L +  FR   ++ +   +  +IFVG N  GKT++  A+   + G  F
Sbjct: 1  MHLKKLVVRNFRRLRNVVIDLASDISIFVGANNSGKTSVGHALQLFTGGGRF 52


>gi|49481969|gb|AAT66696.1| DNA repair and genetic recombination protein [Geobacillus
           thermoglucosidasius]
 gi|49481975|gb|AAT66699.1| DNA repair and genetic recombination protein [Geobacillus
           thermoglucosidasius]
 gi|49481983|gb|AAT66703.1| DNA repair and genetic recombination protein [Geobacillus
           thermoglucosidasius]
 gi|49481985|gb|AAT66704.1| DNA repair and genetic recombination protein [Geobacillus
           stearothermophilus]
          Length = 573

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 93/280 (33%), Gaps = 51/280 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G        A +EG+           +  A++ I +                   ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLDNENHPCYDKCAEVGIDISEGMVVLRREIFANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD----RMVFAIDPRHRRRMID 161
            ++   ++ ++   L           +           LD      + A    +R     
Sbjct: 112 KLVTTAILRDIGSTLVDIHGQHEHQELM--DPSRHLPLLDEYGGEEIAAALEEYRAVYEK 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210
           +E+L +   +L       +     +  Q+ E+           ++   +V+++N   +  
Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQVNEDEQLMEEKVKIMNFQKIYE 229

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247
            +    +  +  H  L   G      +       ALKE Y
Sbjct: 230 ALKHSYEALSGEHRGLDWIGLAMSHLEDVTSISPALKEAY 269


>gi|49483397|ref|YP_040621.1| chromosome partition protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282903788|ref|ZP_06311676.1| SMC family, C- domain protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905552|ref|ZP_06313407.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908527|ref|ZP_06316357.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|283957976|ref|ZP_06375427.1| SMC family, C- domain protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|295427720|ref|ZP_06820352.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297591321|ref|ZP_06949959.1| SMC family domain protein [Staphylococcus aureus subsp. aureus MN8]
 gi|49241526|emb|CAG40212.1| putative chromosome partition protein [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|282327589|gb|EFB57872.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282330844|gb|EFB60358.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595406|gb|EFC00370.1| SMC family, C- domain protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790125|gb|EFC28942.1| SMC family, C- domain protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|295128078|gb|EFG57712.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|297576207|gb|EFH94923.1| SMC family domain protein [Staphylococcus aureus subsp. aureus MN8]
 gi|315194122|gb|EFU24515.1| putative chromosome partition protein [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|218185967|gb|EEC68394.1| hypothetical protein OsI_36551 [Oryza sativa Indica Group]
          Length = 923

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 82/231 (35%), Gaps = 50/231 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I  + +S F  Y  L      +  + +G NG GK++++ AI+F L+       R +S   
Sbjct: 39  IVEIELSNFMTYHRLACRPGPRLNLVLGPNGSGKSSLVCAIAFALAADPSVLGRASSVGA 98

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-INDVVIRVVD--ELNKHL 120
             + G  S      ++       +  I++  + D   +    ++   +   +  +L K  
Sbjct: 99  FVKRGEESG---HVKISLRGNTPEHIIRITRKIDTKNKSEWQLDGTTVPRKEVVDLIKKF 155

Query: 121 RISW-----LVPSMDRI-------------------FSGLSMERRRFLDRMVFAIDPRHR 156
            I        +P    +                   F  L ++ R+ +DR          
Sbjct: 156 NIQVNNLTQFLPQDRVVEFAKLTPIQLLEETEKAVGFPDLPVQHRQLIDRS--------- 206

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           +++ + E  ++ + + L           ++ A++ E   ++   R +++  
Sbjct: 207 KQLKNLEVAVKQKEQTLNN-------LKALNAELKEDVERV-QQRDKLMKK 249


>gi|212545062|ref|XP_002152685.1| DNA repair protein Rad18, putative [Penicillium marneffei ATCC
           18224]
 gi|210065654|gb|EEA19748.1| DNA repair protein Rad18, putative [Penicillium marneffei ATCC
           18224]
          Length = 1143

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 98/318 (30%), Gaps = 44/318 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++     +     R  S   
Sbjct: 102 IERVDCFNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTALTLCLGAKASVTNRGQSLKS 161

Query: 64  VTRIGSPSFFSTFARVEGMEG-----LADISIKLETRDDRSVRC-LQINDVVIRVVDELN 117
             + G  S           +G         SI +E    +S     +I     +++    
Sbjct: 162 FIKEGKESATIIVRIKNQGDGAYMPNEYGKSIIVERSFSKSGTSGFKIKSEAGKIISTKK 221

Query: 118 KHL-------------RISWLVPSMDR--IFSGLSMERRRFL--DRMVFAIDPRHRRRMI 160
             L              ++ L   M R  + S    E+ +F      +  +D  + R + 
Sbjct: 222 GDLDAITDYFNLQIDNPMNVLSQDMARQFLSSSSPAEKYKFFVKGVQLEQLDNDY-RVIE 280

Query: 161 DFERLMRGR-------NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI-------N 206
            +   M+ R        ++L      +     +  Q   L  +I   R +M         
Sbjct: 281 GYIDQMKERLEVQREDLKVLRGNKEKAQRRLELSDQRNTLRQRIRNLRAQMAWAQVENQE 340

Query: 207 ALSSLIMEYVQKENFPHIKL-SLTGFLDGKFDQSFCALK--EEYAKKLFDGRKMDSMSRR 263
            +   I E + K +       S T   D K++++   L+   E      +         +
Sbjct: 341 RIRDRIQEEIAKLDGQIASAESATAIFDRKYEEAERELETATELLNSTKEALSKAQDESQ 400

Query: 264 TLIGPHRSDLIVDYCDKA 281
            L   +  D+   +  KA
Sbjct: 401 VLKDANAQDMAEHHDIKA 418


>gi|15895028|ref|NP_348377.1| chromosome segregation SMC protein, ATPase [Clostridium
           acetobutylicum ATCC 824]
 gi|15024720|gb|AAK79717.1|AE007684_5 Chromosome segregation SMC protein, ATPase [Clostridium
           acetobutylicum ATCC 824]
 gi|325509165|gb|ADZ20801.1| Chromosome segregation SMC protein, ATPase [Clostridium
           acetobutylicum EA 2018]
          Length = 1191

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 112/328 (34%), Gaps = 38/328 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K + I  F+++A    L+F    T  VG NG GK+NI +A+ ++   +     R   
Sbjct: 1   MFLKSIEIRGFKSFADKTDLIFKNGITAVVGPNGSGKSNISDAVLWVLGEQSVKNLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             DV   G+    S   A+V  +   +D  + L+  +    R L         IN+   R
Sbjct: 61  MEDVIFAGTQYRKSVGLAQVSLILDNSDKQLNLDYSEVTVSRRLYRSGDSEYYINNTKCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          ++ + SG   ERR  L+     +    + R +D E
Sbjct: 121 LKDIQELFMDTGIGKEGYSIIGQGKIEAVLSGKPEERRALLEEAAGIVK--FKTRKVDAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +   N+ L           + E ++  L  +I   + +    LS  +    ++ N   
Sbjct: 179 KKLENTNQNLVRIN---DILRTYEERLEPL--RIESEKAKRFVELSDELK--TKEINTII 231

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
             +    +      Q    LK    + + D  K+    +         +    Y      
Sbjct: 232 YSIDNIDYRINDLKQKMADLKLSIDENVKDKEKISLELKVATE--SLDEFDAKYSSNKTK 289

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTT 311
                +  QK       L+   L+   T
Sbjct: 290 YYESKSEHQK------ILSEIELLKEKT 311


>gi|37522431|ref|NP_925808.1| hypothetical protein glr2862 [Gloeobacter violaceus PCC 7421]
 gi|35213432|dbj|BAC90803.1| glr2862 [Gloeobacter violaceus PCC 7421]
          Length = 1002

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 9  FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L++S F +Y   RL F   HT    G NG GK+++LEA++++  G+  R  S  DV R 
Sbjct: 5  HLSLSNFLSYRDGRLDFSGIHTACICGANGSGKSSLLEALTWVLWGKS-RADSDDDVVRR 63

Query: 68 GSPSF 72
          G+   
Sbjct: 64 GATEA 68


>gi|327458740|gb|EGF05088.1| DNA repair protein RecN [Streptococcus sanguinis SK1057]
          Length = 559

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G +   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEEQGWDLTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD         +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLNLKGRYQETFDRYRSLRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+            ++  R  ++N
Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDTALHQERDRLLN 221


>gi|312871900|ref|ZP_07731984.1| chromosome segregation protein SMC [Lactobacillus iners LEAF
           3008A-a]
 gi|325913419|ref|ZP_08175785.1| chromosome segregation protein SMC [Lactobacillus iners UPII 60-B]
 gi|311092622|gb|EFQ50982.1| chromosome segregation protein SMC [Lactobacillus iners LEAF
           3008A-a]
 gi|325477188|gb|EGC80334.1| chromosome segregation protein SMC [Lactobacillus iners UPII 60-B]
          Length = 1185

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A    + F+   T  VG NG GK+N+ EAI ++      +  R  +
Sbjct: 1   MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+   GS           G    A++ +  +  D    R L ++   + ++  + +  
Sbjct: 61  MRDIIFAGSE--------FRGPLNKAEVCLIFDNHD----RQLHLDSDKVAIMRRILRSG 108

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
              + + +           R  F+D  +  
Sbjct: 109 DSEYFINNQSVRLK---DIRTLFVDSGLSQ 135


>gi|312872435|ref|ZP_07732504.1| chromosome segregation protein SMC [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092017|gb|EFQ50392.1| chromosome segregation protein SMC [Lactobacillus iners LEAF
           2062A-h1]
          Length = 1185

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A    + F+   T  VG NG GK+N+ EAI ++      +  R  +
Sbjct: 1   MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+   GS           G    A++ +  +  D    R L ++   + ++  + +  
Sbjct: 61  MRDIIFAGSE--------FRGPLNKAEVCLIFDNHD----RQLHLDSDKVAIMRRILRSG 108

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
              + + +           R  F+D  +  
Sbjct: 109 DSEYFINNQSVRLK---DIRTLFVDSGLSQ 135


>gi|312874415|ref|ZP_07734445.1| chromosome segregation protein SMC [Lactobacillus iners LEAF
           2052A-d]
 gi|325911851|ref|ZP_08174255.1| chromosome segregation protein SMC [Lactobacillus iners UPII 143-D]
 gi|311090027|gb|EFQ48441.1| chromosome segregation protein SMC [Lactobacillus iners LEAF
           2052A-d]
 gi|325476357|gb|EGC79519.1| chromosome segregation protein SMC [Lactobacillus iners UPII 143-D]
          Length = 1185

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A    + F+   T  VG NG GK+N+ EAI ++      +  R  +
Sbjct: 1   MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+   GS           G    A++ +  +  D    R L ++   + ++  + +  
Sbjct: 61  MRDIIFAGSE--------FRGPLNKAEVCLIFDNHD----RQLHLDSDKVAIMRRILRSG 108

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
              + + +           R  F+D  +  
Sbjct: 109 DSEYFINNQSVRLK---DIRTLFVDSGLSQ 135


>gi|253733528|ref|ZP_04867693.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253728582|gb|EES97311.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|257425288|ref|ZP_05601713.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257427948|ref|ZP_05604346.1| condensin subunit Smc [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430581|ref|ZP_05606963.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433342|ref|ZP_05609700.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436184|ref|ZP_05612231.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus M876]
 gi|282910806|ref|ZP_06318609.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914010|ref|ZP_06321797.1| SMC family, C- domain protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|282918932|ref|ZP_06326667.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus C427]
 gi|282924055|ref|ZP_06331731.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus C101]
 gi|293501042|ref|ZP_06666893.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293526590|ref|ZP_06671275.1| SMC family, C- domain protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|257271745|gb|EEV03883.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257274789|gb|EEV06276.1| condensin subunit Smc [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278709|gb|EEV09328.1| chromosome segregation SMC protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281435|gb|EEV11572.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257284466|gb|EEV14586.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus M876]
 gi|282314027|gb|EFB44419.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus C101]
 gi|282316742|gb|EFB47116.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus C427]
 gi|282322078|gb|EFB52402.1| SMC family, C- domain protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325411|gb|EFB55720.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|290920662|gb|EFD97725.1| SMC family, C- domain protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096047|gb|EFE26308.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|312438388|gb|ADQ77459.1| SMC family domain protein [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|134056537|emb|CAK47661.1| unnamed protein product [Aspergillus niger]
          Length = 1219

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 78/260 (30%), Gaps = 27/260 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + +K + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRSVRCLQINDVVIRVVD 114
                          A VE +   +D         + L            ++       D
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSDDRFPTGKPEVVLRRTIGLKKDEYTLDRKNATKSD 120

Query: 115 ELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            +N      +   +   I               ER   L  +       +  R  +  ++
Sbjct: 121 VMNLLESAGFSRSNPYYIVPQGRVTALTNMKDSERLNLLKEVAGT--QVYEARRAESLKI 178

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           M   N        D      I  ++AEL  + +  R           +EY     +   +
Sbjct: 179 MHETNN--KRSKIDE-LLEFINERLAELEEEKDELRNYQDKDKERRCLEYTI---YSREQ 232

Query: 226 LSLTGFLDGKFDQSFCALKE 245
             ++ FLD   +Q    +++
Sbjct: 233 QEISSFLDSLEEQRQTGVED 252



 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 24/280 (8%)

Query: 80   EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSM- 138
            E    L +++  +E    R  + +Q    + +   E   ++R   ++P         +  
Sbjct: 913  ETRRELEELAKSIEKHQRRMEKSMQKKAALTKQAAECASNIRDLGVLPDEAFTKYKNTDS 972

Query: 139  ----ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
                ++   ++  +      +++    +    + R  L +      +   SI+  +  L 
Sbjct: 973  NAVVKKLHKVNESLKKYSHVNKKAFEQYNNFTKQREALTSRREELEASEKSIDDLINVLD 1032

Query: 195  VKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
             + + A       +S       +K       +L +    D    Q      E+       
Sbjct: 1033 QRKDEAIERTFKQVSREFANVFEKLVPAGRGRLIIQRKTDRALRQPDEVDSED------- 1085

Query: 254  GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
                +S+     +G   S       D+   I   S G++ +  + +  A           
Sbjct: 1086 EEARESVENYVGVGISVS--FNSKHDEQQRIQQLSGGQKSLCALALVFA-----IQACDP 1138

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTG 349
            AP  L DEI A+LD   R A+ +++  I      Q   T 
Sbjct: 1139 APFYLFDEIDANLDAQYRTAVAQMLKSISDSTNGQFICTT 1178


>gi|283470447|emb|CAQ49658.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|240147291|ref|ZP_04745892.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257200517|gb|EEU98801.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 521

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI+ + I  FR+Y    ++     T+ VG N +GK+ ILEA+
Sbjct: 1  MKIESIKIKNFRSYKEETIIRFDNLTVLVGRNDIGKSTILEAL 43


>gi|27376704|ref|NP_768233.1| hypothetical protein bll1593 [Bradyrhizobium japonicum USDA 110]
 gi|27349845|dbj|BAC46858.1| bll1593 [Bradyrhizobium japonicum USDA 110]
          Length = 810

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++KFL + +FR+      +  DA   +  G NG GKT++L +I     G      S A +
Sbjct: 4   RLKFLKVEDFRSIRGPAGVSLDAPAVLIHGPNGTGKTSLLSSIELALTGS---VPSLARL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            R     + +         GL  +SI+ E    ++   L+IN   I
Sbjct: 61  DR----DYMAYLPHKLAKNGLGRVSIQAEGVGSKTEASLEINGQAI 102


>gi|323442326|gb|EGA99956.1| chromosome segregation SMC protein [Staphylococcus aureus O46]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|323441009|gb|EGA98716.1| chromosome segregation SMC protein [Staphylococcus aureus O11]
          Length = 1188

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|260811386|ref|XP_002600403.1| hypothetical protein BRAFLDRAFT_129060 [Branchiostoma floridae]
 gi|229285690|gb|EEN56415.1| hypothetical protein BRAFLDRAFT_129060 [Branchiostoma floridae]
          Length = 1229

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
          + IK + I  F++YA   +V  FD       G NG GK+NIL++I FL   S     R  
Sbjct: 1  MYIKEIVIDGFKSYAQRTVVSGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRAG 60

Query: 60 SYADVT 65
          S  ++ 
Sbjct: 61 SLQELV 66


>gi|312793797|ref|YP_004026720.1| SMC domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312180937|gb|ADQ41107.1| SMC domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 637

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + + +L +  +++   L + F     I +G N  GK+NI++AI  
Sbjct: 1  MYLNYLMVKNYKSLKELEIKFSKGKNIIIGRNNAGKSNIIKAIDL 45


>gi|293603743|ref|ZP_06686162.1| DNA repair protein RecN [Achromobacter piechaudii ATCC 43553]
 gi|292817917|gb|EFF76979.1| DNA repair protein RecN [Achromobacter piechaudii ATCC 43553]
          Length = 553

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 88/251 (35%), Gaps = 34/251 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F       + F    T+F G+ G GK+ +++A++     RG      A + R
Sbjct: 2   LRTLHIRDFVIVEQTEIHFGPGFTVFSGETGAGKSILVDALALALGERG-----DASMLR 56

Query: 67  IGSPSFF---------STFARVEGMEGLADISIKLETRDDRSVR-CLQINDVV--IRVVD 114
            G+P            S  A +   E  A+  + L    D   R    IN     +  + 
Sbjct: 57  EGAPRADITAVFDTPKSLHAWLAEREIDAEDELSLRRVIDAQGRSRAYINGTPATVGQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRNRL 172
           EL   L       +   +       +R  LD       +     +    +  L R     
Sbjct: 117 ELGDSLVDIHGQHAHQSLMR--PDAQRDLLDAHGGHGDLRQTVGQAWKQWRALARQ---- 170

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           L     D++  ++   ++          +V+ ++ L+    E+   ++  H +LS +  L
Sbjct: 171 LEAAEKDAASLANERDRL--------QWQVDELDQLALGPDEWESLQS-EHTRLSHSQSL 221

Query: 233 DGKFDQSFCAL 243
                Q   AL
Sbjct: 222 LDGASQILEAL 232


>gi|293192939|ref|ZP_06609783.1| DNA repair protein RecN [Actinomyces odontolyticus F0309]
 gi|292819995|gb|EFF78994.1| DNA repair protein RecN [Actinomyces odontolyticus F0309]
          Length = 558

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 69/221 (31%), Gaps = 28/221 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L+IS      S  + F     +  G+ G GKT +L ++  L   R     + A + R
Sbjct: 2   IESLDISHLGVIESAHVDFGEGLIVVTGETGAGKTMVLSSLQLLLGAR-----ADAALVR 56

Query: 67  IGSPSF---------FSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            G+                ARVE   GL +   + +      + R              L
Sbjct: 57  SGADHLSVDGIFSVNEEVAARVEEAGGLVEGGELIVGRSVRTAGRSRAHLGSRPVPASVL 116

Query: 117 NKHL-RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
              +  +  +    D+I       +RR LD+        H   + ++    R        
Sbjct: 117 TDIVGSMVTIHGQSDQIRLTGEAAQRRALDQFGGE---EHAALLGEYRAAFRH------- 166

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEM--INALSSLIME 214
                    S+    +E   ++   R  +  I  L   I E
Sbjct: 167 AVEVKHRLDSLRGDASERAEELEDLRAAIKQIEELDPAIGE 207


>gi|49481977|gb|AAT66700.1| DNA repair and genetic recombination protein [Geobacillus
           thermoglucosidasius]
          Length = 573

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/280 (17%), Positives = 93/280 (33%), Gaps = 51/280 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G        A +EG+           +  A++ I +                   ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLDNENHPCYDKCAEVGIDISEGMVVLRREIFANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD----RMVFAIDPRHRRRMID 161
            ++   ++ ++   L           +           LD      + A    +R     
Sbjct: 112 KLVTTAILRDIGSTLVDIHGQHEHQELM--DPSRHLPLLDEYGGEEIAAALEEYRAVYEK 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210
           +E+L +   +L       +     +  Q+ E+           ++   +V+++N   +  
Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQVNEDEQLMEEKVKIMNFQKIYE 229

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247
            +    +  +  H  L   G      +       ALKE Y
Sbjct: 230 ALKHSYEALSGEHRGLDWIGLAMSHLEDVTSISPALKEAY 269


>gi|49481993|gb|AAT66708.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A92]
          Length = 573

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 91/280 (32%), Gaps = 51/280 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETRDDRSVRCLQINDVVIRV--- 112
            G        A +EG+           +  A++ I +        R +  N   +     
Sbjct: 57  YGEEK-----AEIEGLFLLDNENHPCYDKCAEVGIDISEGMVVLRREIFANGKSVCRVNG 111

Query: 113 -------VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD----RMVFAIDPRHRRRMID 161
                  + ++   L           +           LD      + A    +R     
Sbjct: 112 KLVTTAXLRDIGSTLVDIHGQHEHQELM--DPSRHLPLLDEYGGEEIAAALEEYRAVYEK 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210
           +E+L +   +L       +     +  Q+ E+           ++   +V+++N   +  
Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQVNEDEQLMEEKVKIMNFQKIYE 229

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247
            +    +  +  H  L   G      +       ALKE Y
Sbjct: 230 ALKHSYEALSGEHRGLDWIGLAMSHLEDVTSISPALKEAY 269


>gi|312143707|ref|YP_003995153.1| chromosome segregation protein SMC [Halanaerobium sp.
           'sapolanicus']
 gi|311904358|gb|ADQ14799.1| chromosome segregation protein SMC [Halanaerobium sp.
           'sapolanicus']
          Length = 1206

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 5/107 (4%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62
           +  + +  F+++A+   +  +   T  VG NG GK+NI++A+   L     +  R +  +
Sbjct: 6   LTKIRLKGFKSFANKTDIELEENITAVVGPNGSGKSNIVDAVRWVLGEQSAKTLRGSRMS 65

Query: 63  DVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
           D+   GS        A V      +D  + +E  +    R + I+  
Sbjct: 66  DIIFSGSEELNPKRSASVTLFFDNSDGILPVEGDELTLGREVDIDGK 112


>gi|303228832|ref|ZP_07315646.1| DNA repair protein RecN [Veillonella atypica ACS-134-V-Col7a]
 gi|302516544|gb|EFL58472.1| DNA repair protein RecN [Veillonella atypica ACS-134-V-Col7a]
          Length = 554

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 86/244 (35%), Gaps = 34/244 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + + F    TIF G+ G GK+ +++A S L    G R +S  +  R
Sbjct: 2   LTQMSIRNFALIEQMNISFKDGITIFTGETGAGKSILMDAFSILL---GERASS--EFIR 56

Query: 67  IGSPSFFST-FARVEGMEGLADI-----------SIKLETRDDRSVRCLQI-NDVVI--R 111
            G  SF       +   + L D+            + L    + S + + + ND  I  +
Sbjct: 57  HGKDSFVIDGIFDIANHQSLLDLLQSKNILVEDNQLILSRSFNTSGKSIILANDQPIPLK 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + E+   L       S  ++ +        +LD    A    ++     ++     +  
Sbjct: 117 ALKEIGLLLADIHGQYSNQKLLN--PDSHHEYLDGYNQAGSKAYKEYKAAYKEYKEAKQA 174

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                        ++   MAE   ++++ R + I+ +    ++  + E+       L  F
Sbjct: 175 -----------LDNLSEHMAERARELDMLRFQ-IDEIEEAGLQIGEDESIAEELKRLDSF 222

Query: 232 LDGK 235
               
Sbjct: 223 DHID 226


>gi|262091782|gb|ACY25370.1| repair protein RecN [uncultured actinobacterium]
          Length = 566

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 91/262 (34%), Gaps = 31/262 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M+ R  ++ + I          L      T+  G+ G GKT IL A++ +  G+     +
Sbjct: 1   MSERTFLEEITIRSIGVIDQSTLEISKGLTVLTGETGAGKTMILTALNLILGGK-----A 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADI--SIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            + + R GS    ++  R    +    +   + +E  +    R +  +       + ++ 
Sbjct: 56  DSALVRKGSERLVAS-GRFSIPKSSEHLFEDVLVEDGELIVTRTVAADGKSKATTNGISA 114

Query: 119 HLRISWLVPSMDRIFSGL--------SMERRRFLDRMVFAIDPR-HRRRMIDFERLMRGR 169
                 +V        G         S  +R  +DR    ID   ++R +  +   ++ R
Sbjct: 115 TAGTLSIVGENLVEVHGQAANQNITKSSRQRELVDRF-GQIDLGDYQRALSSY-HDLKER 172

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
              L +           + +++EL              L+  + EY  + +    +LS  
Sbjct: 173 ISSLKKSIAQK------DKELSEL-----REFANAFKKLNPSVGEY-AEIDLEIARLSSV 220

Query: 230 GFLDGKFDQSFCALKEEYAKKL 251
                   Q+  A+++E A  L
Sbjct: 221 EEFRLATAQATAAIEDEEAGSL 242


>gi|260432725|ref|ZP_05786696.1| chromosome segregation protein SMC [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416553|gb|EEX09812.1| chromosome segregation protein SMC [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 1151

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 31/232 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+ ++      +  R  +
Sbjct: 1   MRFTKLKLTGFKSFVDPTDLIIADGLTGVVGPNGCGKSNLLEALRWVMGENRPKSMRGGA 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+      +F      ++  E LA         I++  R  R V    + N  
Sbjct: 61  MEDVIFAGAATRPARNFAEVVLTMDNSERLAPAGFNDSDQIEIVRRITRDVGSAYKANGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++        + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVGQNRIAELINAKPRARRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSS 210
             E  ++ +         D      +  Q+A+L    +      E+   L  
Sbjct: 177 RHEAELKLKGTEANLTRVDDV-LEQLGTQLAQLARQARQAARYREIGEQLRQ 227


>gi|256422513|ref|YP_003123166.1| ATP-dependent endonuclease of the OLD family-like protein
          [Chitinophaga pinensis DSM 2588]
 gi|256037421|gb|ACU60965.1| ATP-dependent endonuclease of the OLD family-like protein
          [Chitinophaga pinensis DSM 2588]
          Length = 582

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ ++I  FR+     + F     I +G N  GKTN+L+AI+ L
Sbjct: 1  MILEEISIQNFRSIKDETITFPHNCLILLGKNEAGKTNVLKAIAAL 46


>gi|167044009|gb|ABZ08695.1| putative SMC family, C-terminal domain protein [uncultured marine
           crenarchaeote HF4000_APKG3K8]
          Length = 1169

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 87/284 (30%), Gaps = 43/284 (15%)

Query: 5   IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRA 59
           + IK ++I  F+++   +  + F+       G NG GK+NIL+AI F       R  R+ 
Sbjct: 2   VHIKKVDIFGFKSFGFKNTSVNFEPGLVSISGPNGSGKSNILDAIVFAMGENKARVMRQP 61

Query: 60  SYADVTR-IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           +   +   I          RV      +D  I +++      R +      +  +D    
Sbjct: 62  NLRSLIHDIDGNRHGPKLTRVRVQFDNSDRKIPVDSDTVTITREMNDKGESVYHMDSKKI 121

Query: 119 HLRISW---------LVP-------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           +              L P       ++ RI    S E+R+ ++ +V      +       
Sbjct: 122 NRNRILDIFEVANANLTPLNAVQQGTVTRISEMSSEEKRKTIEDLVGL---SYFDEK--- 175

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSSLIME 214
                 +   L +            A+M E+  +I           R E I         
Sbjct: 176 ------KTESLKQLTEADQRLEVAMAKMGEVKKQIDELEVERNLKLRYEFIGRELDRFRA 229

Query: 215 YVQKENFPHIKLSLTGFLDG-KFDQSFCALKEEYAKKLFDGRKM 257
               E    IK   T   +    D S     E+    L D    
Sbjct: 230 IDAAEKLREIKSEKTVKEEKYNNDSSETERLEKLRSTLRDEISK 273



 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 27/199 (13%)

Query: 183  CSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
               +E + + L   +  IA    +   +       +K      + ++  F++G       
Sbjct: 957  IEILEKEESSLAASLNAIAPQRYVEVSTGYHSMSSRKNELEAERNAVVSFIEGIEKNKRQ 1016

Query: 242  ALKEEYAKKLFDGRKMDSMSRRTLIGP-----HRSDLI-------VDYCDKAITIAHG-S 288
               + +     D    +  ++           +  D+        + + +K    +   S
Sbjct: 1017 TFLDAFDTV--DNEIREIFTKMNGGNAWLELENEDDIFNAGISYFIQFPNKPKRESTSIS 1074

Query: 289  TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD--IGSQIF 346
             GE+ +  V   LA  RL       +P  L DEI AHLD     +L +IV +   GSQ  
Sbjct: 1075 GGEKTLAAVVFVLALQRL-----KPSPFYLFDEIDAHLDAPNAESLAKIVEERSKGSQFI 1129

Query: 347  MTGTDKSVFDSLNETAKFM 365
            M     S+ DS+ E AK +
Sbjct: 1130 M----VSLKDSVVEKAKLI 1144


>gi|332638333|ref|ZP_08417196.1| DNA repair protein RecN [Weissella cibaria KACC 11862]
          Length = 562

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 33/242 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I  F     L + F    T+  G+ G GK+ I++A+  L+ GRG       D  R
Sbjct: 2   LQELSIQNFAIIPKLNISFQPGMTVLTGETGAGKSIIIDAVGLLTGGRG-----SQDFIR 56

Query: 67  IGSPSFF------------STFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIR-- 111
            G+                      E    + D  + +     RS R  +++N  ++   
Sbjct: 57  EGADKTVLQGLIDVEPDQPVVAVLNELGIPVEDNQLLIHRELQRSGRNVIRVNGSLVNAA 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + E+ +HL           +     M+  R L  +              +++       
Sbjct: 117 TLKEIGQHLVDIHGQNEHQEL-----MQVERHLGLLDEFAKKAIAPVAQKYQKAYENYRS 171

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           L T  +   +   +   ++  L  +           L+   +   ++E        LT F
Sbjct: 172 LETAFHKRQADEQAWAQRLDMLSFQ--------SKELADAALVDGEEEALEAEYQELTNF 223

Query: 232 LD 233
            D
Sbjct: 224 QD 225


>gi|315653377|ref|ZP_07906299.1| chromosome segregation protein Smc [Lactobacillus iners ATCC 55195]
 gi|315489302|gb|EFU78942.1| chromosome segregation protein Smc [Lactobacillus iners ATCC 55195]
          Length = 1185

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A    + F+   T  VG NG GK+N+ EAI ++      +  R  +
Sbjct: 1   MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+   GS           G    A++ +  +  D    R L ++   + ++  + +  
Sbjct: 61  MRDIIFAGSE--------FRGPLNKAEVCLIFDNHD----RQLHLDSDKVAIMRRILRSG 108

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
              + + +           R  F+D  +  
Sbjct: 109 DSEYFINNQSVRLK---DIRTLFVDSGLSQ 135


>gi|312130163|ref|YP_003997503.1| DNA repair protein recn [Leadbetterella byssophila DSM 17132]
 gi|311906709|gb|ADQ17150.1| DNA repair protein RecN [Leadbetterella byssophila DSM 17132]
          Length = 550

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 59/372 (15%), Positives = 129/372 (34%), Gaps = 43/372 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD--- 63
           +K L I  +     L +  D+   I  G+ G GK+ +L A+  L   R   +A + +   
Sbjct: 2   LKNLTIKNYALIQELEIQPDSGLNIITGETGAGKSIMLGALGLLMGNRADVKALFNEEEK 61

Query: 64  VTRIG----SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
               G    S      F     ++      I+ E   +   R   +ND  +  +D L + 
Sbjct: 62  CIVEGTFDLSKHSLQNFFEENDLDYEDLTHIRREISPNGKSRAF-VNDSPV-TLDILKEL 119

Query: 120 LRISW-LVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNRLLTEG 176
             +   +    D +  G +  + + LD     ++    ++     F++ +     L  + 
Sbjct: 120 GELLMDIHSQHDTLLLGNAGFQLKTLDAYGQHLELIQNYQIAYQKFKKALHQYQSLSEKA 179

Query: 177 Y-------FDSSWCSSI---------------EAQMAELGVKINIARVEMINALSSLIME 214
                   ++S     +               E Q+ E   +I         AL+   + 
Sbjct: 180 ESLKKEFDYNSHLLDELKALQPEKIEQYELESELQVLENAEEIKRKLAVAYQALNHSDLP 239

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
            +Q        L     L  +++           + L   ++++    +    P R +++
Sbjct: 240 ALQLMKEGQQALQTIAHLSPRYEALKERWNSSLIELLDISQELEIEETKVEADPTRLEMV 299

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN-TTGFAPILLLDEISAHLDEDKRNA 333
            D  ++   +      ++K V+     A  ++  +       +L LDE  + L+ +K  A
Sbjct: 300 QDSLNQLYKL------QKKHVVDSTE-ALIQIKEDLQKKVDTVLNLDEELSTLNAEKEEA 352

Query: 334 LFRIVTDIGSQI 345
           L +I ++I  Q+
Sbjct: 353 L-QIASEIALQL 363


>gi|312794482|ref|YP_004027405.1| SMC domain-containing protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181622|gb|ADQ41792.1| SMC domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 412

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 19/109 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L++  F+++  + +       + +G N  GK+N ++   FL            D+
Sbjct: 1   MKLKNLSVKNFKSFKEINVELKD-FNVVIGANASGKSNFVQVFKFL-----------RDI 48

Query: 65  TRIGSPSFFSTFARVE-------GMEGLADISIKLETRDDRSVRCLQIN 106
             +G  +  S    +E       G      ISI  E  D+  V   + N
Sbjct: 49  MNLGLENAVSIQGDIEYLTNLKVGRGEELSISIVCEMEDNEKVVNTRQN 97


>gi|293510002|ref|ZP_06668710.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus M809]
 gi|291466946|gb|EFF09464.1| chromosome segregation protein SMC [Staphylococcus aureus subsp.
           aureus M809]
          Length = 1188

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|269836261|ref|YP_003318489.1| hypothetical protein Sthe_0228 [Sphaerobacter thermophilus DSM
          20745]
 gi|269785524|gb|ACZ37667.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
          20745]
          Length = 636

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +++    +  FRN   S  +      T  VG N  GK+ +LEA+  L+P 
Sbjct: 1  MRLTSFRVQYFRNIIDSTTVEVQPDITCLVGKNESGKSALLEALYMLNPA 50


>gi|71406330|ref|XP_805714.1| structural maintenance of chromosome 3 [Trypanosoma cruzi strain CL
           Brener]
 gi|70869223|gb|EAN83863.1| structural maintenance of chromosome 3, putative [Trypanosoma
           cruzi]
          Length = 220

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 5   IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRAS 60
           + IK + IS FR+Y      +    ++ + VG NG GK+N   A+ F+   +      A 
Sbjct: 1   MHIKNILISGFRSYRDQSFQVDLSPKNNVIVGKNGSGKSNFFAAVQFVLSEKYTTLTAAE 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
             ++   GS     S F  +        + I          + ++I   +    DE 
Sbjct: 61  RKELFHAGSGRPALSIFVEIIFDNSDGRLVIP----GRAEEKEVRIRRTLGLKQDEF 113


>gi|68485641|ref|XP_713303.1| potential nuclear DNA repair complex SMC ATPase [Candida albicans
           SC5314]
 gi|68485744|ref|XP_713250.1| potential nuclear DNA repair complex SMC ATPase [Candida albicans
           SC5314]
 gi|46434731|gb|EAK94133.1| potential nuclear  DNA repair complex SMC ATPase [Candida albicans
           SC5314]
 gi|46434785|gb|EAK94186.1| potential nuclear  DNA repair complex SMC ATPase [Candida albicans
           SC5314]
 gi|238879771|gb|EEQ43409.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1073

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 3/120 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF-RRASYADV 64
           I+ + +  F  Y+           + +G NG GK+ ++ +I   L+      +R +   +
Sbjct: 26  IRKVRVWNFTTYSYTEFNLSPTLNMIIGPNGSGKSTLVASICIGLAGSINLIKRKNLKSM 85

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G     S    +E  EG + I IK E     S   +         + ++     I  
Sbjct: 86  IKTGQEK-SSVEITIENYEGHSPIVIKREFTAKESNWTVNNKRATESKIKDIRTKFNIQL 144


>gi|323474284|gb|ADX84890.1| hypothetical protein SiRe_0813 [Sulfolobus islandicus REY15A]
          Length = 83

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          I  + I  F++  S+ +    +  + +G NG GKT  +E++
Sbjct: 2  INKITIRNFKSLESVDVDL-KKINVLIGPNGSGKTAFVESL 41


>gi|312878419|ref|ZP_07738320.1| SMC domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794804|gb|EFR11232.1| SMC domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 412

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 19/109 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+K L++  F+++  + +       + +G N  GK+N ++   FL            D+
Sbjct: 1   MKLKNLSVKNFKSFKEINVELKD-FNVVIGANASGKSNFVQVFKFL-----------RDI 48

Query: 65  TRIGSPSFFSTFARVE-------GMEGLADISIKLETRDDRSVRCLQIN 106
             +G  +  S    +E       G      ISI  E  D+  V   + N
Sbjct: 49  MNLGLENAVSIQGDIEYLTNLKVGRGEELSISIVCEMEDNEKVVNTRQN 97


>gi|300521542|gb|ADK25982.1| SMC chromosome segregation ATPase [Candidatus Nitrososphaera
           gargensis]
          Length = 1186

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 27/169 (15%)

Query: 5   IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG----RGFRR 58
           + IK L +  F+++   +  + F+       G NG GK+NIL+AI   + G    +  R 
Sbjct: 6   VHIKKLEVYGFKSFGFKNTVVHFEKGLIAVTGPNGSGKSNILDAI-MFAIGENSPKALRV 64

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKL---------ETRDDRSVRCLQINDVV 109
             +  +    S +      RV       D  I +         E           +N   
Sbjct: 65  DKFQSL-FHDSHNSSHRLIRVSLTFDNTDRGIPVDEDSVTLTREMEGQNGESQYSLNGKK 123

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVF 149
           +     + + L +    P+   I             S ERR+ ++ +V 
Sbjct: 124 VSKTT-IMELLEVVLAAPNKLNIVQQGMITRISELNSEERRKIIEDIVG 171


>gi|253731851|ref|ZP_04866016.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253724450|gb|EES93179.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus aureus subsp. aureus USA300_TCH959]
          Length = 1153

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAIGFKSFADQTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSVRCLQINDVV 109
             D+   G+      ++     R++       +        +   R   S   +  +   
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVQLRLDNHSKKLSVDENEVIVTRRLYRSGESEYYINNDRAR 121

Query: 110 IRVVDE------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           ++ + +      L K          +D I +   ++RR+ ++
Sbjct: 122 LKDIADLFLDSGLGKEAYSIISQGRVDEILNAKPIDRRQIIE 163


>gi|110833808|ref|YP_692667.1| chromosome segregation SMC protein [Alcanivorax borkumensis SK2]
 gi|110646919|emb|CAL16395.1| chromosome segregation SMC protein [Alcanivorax borkumensis SK2]
          Length = 1166

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 77/213 (36%), Gaps = 19/213 (8%)

Query: 5   IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++       F    T  VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTTYFPENLTAVVGPNGCGKSNIIDAVRWVMGESSAKHLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
            ADV   GS +            F ++ A V G  G   +IS+K +   D        N 
Sbjct: 61  MADVIFNGSNARKPVAQASIELIFDNSDATVTGEYGKFNEISVKRQVTRDGQSNYFLNNT 120

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
              R   ++      + L P    I     + R          +       +  ++   R
Sbjct: 121 KCRRK--DIADIFLGTGLGPRSYAIIEQGMISRLIEAKPEELRVYIEEAAGISKYKARRR 178

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                +     +    + I  ++A    +++  
Sbjct: 179 ETENRIRRTRENLERLTDIRDELARQIERLSRQ 211


>gi|321116568|dbj|BAJ72267.1| hypothetical protein [Acidovorax sp. KKS102]
          Length = 778

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 14/105 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--- 61
           + +K L +  FR   ++ +   +  +IFVG N  GKT++  A+     G G         
Sbjct: 1   MHLKKLAVRNFRRLRNVVIDLASDISIFVGANNSGKTSVGHALQLF-TGSGRFNIHDFSA 59

Query: 62  ---ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
              AD+   G           E      +I +  E   D   R +
Sbjct: 60  ELWADIVAFGEGDG-------EASLPTMEIDVWFEIGPDDVHRVI 97


>gi|47104068|ref|YP_015497.1| putative exonuclease [Photobacterium profundum SS9]
 gi|46911632|emb|CAG17981.1| putative exonuclease[Photobacterium profundum SS9]
          Length = 665

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 64/413 (15%), Positives = 128/413 (30%), Gaps = 80/413 (19%)

Query: 5   IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61
           +K+  + IS F+ +      + F+ Q T  +G NG GKT+ L+A+S         R+   
Sbjct: 4   MKLSKVRISNFQCFDQSQTEIDFEEQLTALIGLNGSGKTSTLQALSRMFGVSESARKIKV 63

Query: 62  AD-------VTRIGSPSFFSTFARVEGMEGLADISI--------------KLETRDDRSV 100
            D       V R    S  + F   E       I++              ++  R     
Sbjct: 64  DDFHSPSVTVQRADELSIEAWFTFPEVESEADMIAVAGTFNQLCFKSSGNEMMLRLKLEA 123

Query: 101 RCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR----HR 156
           +    +     VVDE   +     L  S           RR   + +     P      +
Sbjct: 124 KLTVDDISPDGVVDETVYY----VLSDSDTYASDKCRELRRSDRNNIQVHYIPASRNPFK 179

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
                 + L+    RLL    +D S    ++  +                 L+    E +
Sbjct: 180 EISSSTKMLL---GRLLNAIQWDQSADGELQKAL----------------ELTEQASEEI 220

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
            K +   +   +   L   + + +       AK  F   + D + +   +          
Sbjct: 221 SKNSAIKL---IEKQLQNSWQEMYSGDYLSKAKVNFLPLQTDELLKTITLSFESDT---- 273

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARL----ISNTTGF------------APILLLD 320
             ++  T+   S G++ ++ + I  A   L    +   +                +L L+
Sbjct: 274 -NNRKATMDRLSDGQRSLLHIAIIQAVHELESKTLREQSNRVHFDSKKLNTPIFTLLALE 332

Query: 321 EISAHLDEDKRNALFR----IVTDIGSQIFMTGTDKSVFDSLNET-AKFMRIS 368
           E   HL       + +    +     +Q+ +T    S+   +  T  ++ R+ 
Sbjct: 333 EPENHLAPHFLGRIVKSMSSLAKSTNAQVLVTTHSPSLVGRIEPTQIRYFRLD 385


>gi|326478705|gb|EGE02715.1| DNA repair protein Rad18 [Trichophyton equinum CBS 127.97]
          Length = 1126

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 91/314 (28%), Gaps = 68/314 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++    G+     R  S   
Sbjct: 95  IERVDCYNFMCHEHFSVELGPLINFIVGKNGSGKSAILTALTLCLGGKASATNRGQSLKS 154

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI------SIKLETRDDRSV--------RCLQINDVV 109
             + G  S  +   R++     A +      SI +E    RS         +   I    
Sbjct: 155 FVKEGKESA-TIIVRIKNRGDGAYLPDTYGESIIVERHFTRSGSSGFRLKSKSGTIISTR 213

Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR--- 156
              +D +  +  +    P        + + + +    ++ +       +  +D  +    
Sbjct: 214 RAELDAITDYFALQMDNPMNVLSQDMAREFLSTSSPSDKYKLFMKGVQLEQLDHDYHMME 273

Query: 157 -------RRMIDFERLMR----GRN----------------RLLTEGYFDSSWCSSIEAQ 189
                   ++ D    ++     RN                  +      ++W    E +
Sbjct: 274 ESIDKLQSKLDDHREQLKVLESNRNNARARLAQSDRHESLRARIRHLRSQTAWIQVEEQE 333

Query: 190 MAE--LGVKINIARVEMINALS-------SLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                L  +I   R   I  L        +      Q+ N     + +        D S 
Sbjct: 334 RIRDSLIAEIAETRAR-IEQLESEAENRDAEFQAADQEVNEAKEAVRVAMEAQAAVDDSK 392

Query: 241 CALKEEYAKKLFDG 254
             +K+ Y + + + 
Sbjct: 393 AEIKQRYDEAVKER 406


>gi|307181547|gb|EFN69109.1| Structural maintenance of chromosomes protein 1A [Camponotus
           floridanus]
          Length = 1229

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 13/122 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           +K + +  F++Y   L +      T  VG NG GK+N ++AISF+        R   +++
Sbjct: 5   LKHIEVENFKSYKGKLIIGPLKSFTAVVGPNGSGKSNFMDAISFVMGEKTSSLRVKRFSE 64

Query: 64  VTRIGS------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           +   G+          S  A  E  +G              S    +IN+ ++     L+
Sbjct: 65  LI-HGASIGMPVARSASVTAVFELEDGT---EKSFMRSVQGSSSEHRINNTLVSSQGYLS 120

Query: 118 KH 119
           + 
Sbjct: 121 EL 122


>gi|306829636|ref|ZP_07462826.1| DNA repair protein RecN [Streptococcus mitis ATCC 6249]
 gi|304428722|gb|EFM31812.1| DNA repair protein RecN [Streptococcus mitis ATCC 6249]
          Length = 555

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 78/205 (38%), Gaps = 25/205 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----AATDVIR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RSV  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSHSLQELFDEQGLELGDEIIIRREILQNGRSVSRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL    +    D+               F D   F +   ++     + ++ + 
Sbjct: 117 LRAIGQHL--VDIHGQHDQEELMRPQLHIQMLDEFGDAAFFELKQAYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL 193
              +        S    +E QMAE+
Sbjct: 175 VLEVKKNQQEHKSRIEMLEFQMAEI 199


>gi|75907635|ref|YP_321931.1| hypothetical protein Ava_1413 [Anabaena variabilis ATCC 29413]
 gi|75701360|gb|ABA21036.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 396

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           ++I +K + I  FR + S  L    +  + VG N  GKT+ILEAI  L 
Sbjct: 18 ASKIMLKSIRIENFRGFHSFELQQLGRVNLLVGKNNTGKTSILEAIQLLC 67


>gi|322800717|gb|EFZ21621.1| hypothetical protein SINV_01825 [Solenopsis invicta]
          Length = 703

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 95/288 (32%), Gaps = 36/288 (12%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62
           K+  + +  F  + +L +  +      VG NG GK+ IL A++     R     R  S  
Sbjct: 6   KVAKIRLYNFMCHDALEITLNQNVNFIVGRNGSGKSAILTALTIGLGARANVTSRGTSVK 65

Query: 63  DVTRIGSPSFFSTFARVEGME--------GLADISIKLETRDDRSVRCLQINDVVIRV-- 112
           +  + G  +       V   +        G     +++  R+  S +       +I    
Sbjct: 66  EFIKKGKNNTTVEITLVNKGDAAYKPDIYGDTITIVRIIGRNSSSYKIKNWRGEIISSKR 125

Query: 113 --VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRMI 160
             +D +   + I    P        S   + +    E+        ++ AI+  ++  + 
Sbjct: 126 EELDNIVTTMNIQIDNPISVLNQDVSRTFLVTSKPEEKYNLFMKATLLDAIESNYKEALN 185

Query: 161 ----DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM--INALSSLIME 214
               ++ + ++  +  L++   +         ++     +++ +R E+  +         
Sbjct: 186 ICEEEYAK-LKQYSMALSQIREEIQRLKESIHRL----EEVDESRRELNDLEKELVWATA 240

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            V++     I+ +L  + D   +     L         D +  +   +
Sbjct: 241 IVEETKLNKIQETLKMYEDNLKELQNSELSITTKDAEIDAKIKEIKEK 288


>gi|218190000|gb|EEC72427.1| hypothetical protein OsI_05745 [Oryza sativa Indica Group]
          Length = 208

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 11/117 (9%)

Query: 5   IKIKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRAS 60
           + IK + +  F++Y    +    F  +  + VG NG GK+N   AI   LS      R+ 
Sbjct: 1   MYIKKVVVEGFKSYRE-EISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSE 59

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                           A VE +   +D  I +E       + +++   V    DE  
Sbjct: 60  DRGALLHEGADISVLSAFVEIVFDNSDNRIPVEK------KVVRLRRTVASKKDEYY 110


>gi|196014313|ref|XP_002117016.1| hypothetical protein TRIADDRAFT_61012 [Trichoplax adhaerens]
 gi|190580507|gb|EDV20590.1| hypothetical protein TRIADDRAFT_61012 [Trichoplax adhaerens]
          Length = 385

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 4/101 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           KI  + +  F  +++L++       I +G NG GK+ I+  I     GR     R +S  
Sbjct: 116 KILQIQLINFMCHSNLKMTLGGNVNIIIGRNGSGKSAIMTGIIICLSGRPSITNRASSLK 175

Query: 63  DVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRC 102
           +  +  +            G +    +    +   +R +R 
Sbjct: 176 EFIKKDAKYARIIITLANNGPDAYRAVDFGPKIFLERQIRR 216


>gi|218438832|ref|YP_002377161.1| hypothetical protein PCC7424_1861 [Cyanothece sp. PCC 7424]
 gi|218171560|gb|ACK70293.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
          Length = 353

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K L I  +R +    +   A+  + VGDN +GKT+ LEAI  L
Sbjct: 2  LKDLRIQNYRGFEDFYIDGLARVNLIVGDNNIGKTSFLEAIYLL 45


>gi|312874531|ref|ZP_07734556.1| chromosome segregation protein SMC [Lactobacillus iners LEAF
           2053A-b]
 gi|311089922|gb|EFQ48341.1| chromosome segregation protein SMC [Lactobacillus iners LEAF
           2053A-b]
          Length = 1185

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A    + F+   T  VG NG GK+N+ EAI ++      +  R  +
Sbjct: 1   MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+   GS           G    A++ +  +  D    R L ++   + ++  + +  
Sbjct: 61  MRDIIFAGSE--------FRGPLNKAEVCLIFDNHD----RQLHLDSDKVAIMRRILRSG 108

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
              + + +           R  F+D  +  
Sbjct: 109 DSEYFINNQSVRLK---DIRTLFVDSGLSQ 135


>gi|210135734|ref|YP_002302173.1| hypothetical protein HPP12_1547 [Helicobacter pylori P12]
 gi|210133702|gb|ACJ08693.1| hypothetical protein HPP12_1547 [Helicobacter pylori P12]
          Length = 366

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          IK + I  ++N+  L++        F G N  GKTN+LEA+  
Sbjct: 2  IKSIEIENYKNFKHLKMENFKLINFFTGQNDTGKTNLLEALYI 44


>gi|163760777|ref|ZP_02167857.1| probable dna repair protein [Hoeflea phototrophica DFL-43]
 gi|162282099|gb|EDQ32390.1| probable dna repair protein [Hoeflea phototrophica DFL-43]
          Length = 557

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 26/197 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L FDA  ++  G+ G GK+ +L+++S    GRG        + R
Sbjct: 2   LIQLSIRDIVLIERLDLEFDAGLSVLTGETGAGKSILLDSLSLALGGRG-----DGSLVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIK------------LETRDDRSVRCLQINDVV--IRV 112
            G+     T     G++  A + ++               +       + IND    + +
Sbjct: 57  HGADKGQVTAVFDVGVDHPARLLLRANGIDDDGDLVFRRVQSGDGRTRVFINDQPASVAL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP-----RHRRRMIDFERLMR 167
           + E  +HL           +    +   R  LD      +                  ++
Sbjct: 117 MREAGQHLVEIHGQHDDRALV--DTDAHRALLDAFGGLSERAGDVSALFEAWRAARAALK 174

Query: 168 GRNRLLTEGYFDSSWCS 184
                +     ++ W  
Sbjct: 175 AHRSKVETARREADWLR 191


>gi|124485832|ref|YP_001030448.1| condensin subunit Smc [Methanocorpusculum labreanum Z]
 gi|124363373|gb|ABN07181.1| condensin subunit Smc [Methanocorpusculum labreanum Z]
          Length = 1149

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/283 (17%), Positives = 96/283 (33%), Gaps = 39/283 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + I  ++I  F++++   ++ F    T+  G NG GK+NI+++I F   LS  R  R   
Sbjct: 1   MHIVQVDIDNFKSFSRKTKIPFYEGFTVISGPNGSGKSNIIDSILFVLSLSTSRTLRAEK 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D     S    +        E      IK   R           +       E+ ++L
Sbjct: 61  LTDFINTMSGKNTAEVTLTFSDETKIRRRIK---RTANGYYSYYYLNEKTCSQTEILEYL 117

Query: 121 RISWLVP---------SMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRGR 169
               + P          + RI     +ERRR +D    V   D +  + +++ E++    
Sbjct: 118 AKRGIKPHGYNVVMQGDISRIMDMSDLERRRIIDEIAGVAEFDDKKEQALVELEQV---- 173

Query: 170 NRLLTEGYFDSS--WCSSIEAQMAELGVKI--------NIARVEMINALSSLIMEYVQKE 219
                    D      +S   Q+ EL              A ++ + A   ++     + 
Sbjct: 174 -----RASIDREEILLASYAKQLEELADAREDAVKYQKLQAELDYLKAAKQIVRLQDLER 228

Query: 220 NFPHIKLSLTGFLDGK--FDQSFCALKEEYAKKLFDGRKMDSM 260
               I  S +   + +          + E   +L + R++D  
Sbjct: 229 ELGLIAHSRSEQEEKRAGIRNDISLQENEKNSRLEEVREIDKE 271


>gi|304404217|ref|ZP_07385879.1| chromosome segregation protein SMC [Paenibacillus curdlanolyticus
           YK9]
 gi|304347195|gb|EFM13027.1| chromosome segregation protein SMC [Paenibacillus curdlanolyticus
           YK9]
          Length = 1196

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + ++ F+++A    + F    T  VG NG GK+NI ++I ++      +  R   
Sbjct: 1   MFLKRIELAGFKSFADKTEMEFVRGITAVVGPNGSGKSNISDSIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             D+   GS +     F  V       D ++ LE  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDARKAVNFGEVSLTLDNGDNALPLEYDEVTVTRRVHRSGDSEYMINKQPCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|291407498|ref|XP_002720089.1| PREDICTED: structural maintenance of chromosomes 1A [Oryctolagus
           cuniculus]
          Length = 1168

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     +G E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEDGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|271968789|ref|YP_003342985.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270511964|gb|ACZ90242.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 409

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 12/63 (19%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
          ++  L +  FR+  S++L       + +G NG GKTN+L+   FL+           D+ 
Sbjct: 4  RLVELEVENFRSLRSIKLPLGP-VNVLIGPNGAGKTNVLKVFRFLA-----------DMI 51

Query: 66 RIG 68
          R  
Sbjct: 52 RTD 54


>gi|28870813|ref|NP_793432.1| chromosome segregation SMC protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28854062|gb|AAO57127.1| chromosome segregation SMC protein, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 1162

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 106/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++        G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNEQVGQREAVIGNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|317026832|ref|XP_001399622.2| chromosome segregation protein sudA [Aspergillus niger CBS 513.88]
          Length = 1198

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 78/260 (30%), Gaps = 27/260 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + +K + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRSVRCLQINDVVIRVVD 114
                          A VE +   +D         + L            ++       D
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSDDRFPTGKPEVVLRRTIGLKKDEYTLDRKNATKSD 120

Query: 115 ELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            +N      +   +   I               ER   L  +       +  R  +  ++
Sbjct: 121 VMNLLESAGFSRSNPYYIVPQGRVTALTNMKDSERLNLLKEVAGT--QVYEARRAESLKI 178

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           M   N        D      I  ++AEL  + +  R           +EY     +   +
Sbjct: 179 MHETNN--KRSKIDE-LLEFINERLAELEEEKDELRNYQDKDKERRCLEYTI---YSREQ 232

Query: 226 LSLTGFLDGKFDQSFCALKE 245
             ++ FLD   +Q    +++
Sbjct: 233 QEISSFLDSLEEQRQTGVED 252



 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 24/280 (8%)

Query: 80   EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSM- 138
            E    L +++  +E    R  + +Q    + +   E   ++R   ++P         +  
Sbjct: 892  ETRRELEELAKSIEKHQRRMEKSMQKKAALTKQAAECASNIRDLGVLPDEAFTKYKNTDS 951

Query: 139  ----ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
                ++   ++  +      +++    +    + R  L +      +   SI+  +  L 
Sbjct: 952  NAVVKKLHKVNESLKKYSHVNKKAFEQYNNFTKQREALTSRREELEASEKSIDDLINVLD 1011

Query: 195  VKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
             + + A       +S       +K       +L +    D    Q      E+       
Sbjct: 1012 QRKDEAIERTFKQVSREFANVFEKLVPAGRGRLIIQRKTDRALRQPDEVDSED------- 1064

Query: 254  GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
                +S+     +G   S       D+   I   S G++ +  + +  A           
Sbjct: 1065 EEARESVENYVGVGISVS--FNSKHDEQQRIQQLSGGQKSLCALALVFA-----IQACDP 1117

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTG 349
            AP  L DEI A+LD   R A+ +++  I      Q   T 
Sbjct: 1118 APFYLFDEIDANLDAQYRTAVAQMLKSISDSTNGQFICTT 1157


>gi|304407037|ref|ZP_07388691.1| DNA repair protein RecN [Paenibacillus curdlanolyticus YK9]
 gi|304344024|gb|EFM09864.1| DNA repair protein RecN [Paenibacillus curdlanolyticus YK9]
          Length = 568

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 85/295 (28%), Gaps = 46/295 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I        + + F     +  G+ G GK+ +++A+S +  GRG      A++ R
Sbjct: 2   LRELSIRNLAVIEEVTVSFHNGFHVLTGETGAGKSILIDALSLVVGGRGH-----AELVR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVI-- 110
            G                         G+    +  + +    +   + + +IN   +  
Sbjct: 57  HGCDRSEIEAVFDMAATHPVWDVLNRNGLSASPEELLVIRRELNAQGKSVSRINGQTVNL 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD----RMVFAIDPRHRRRMIDFERLM 166
            ++ E  + L           +F   + +   +LD      +      +      +E   
Sbjct: 117 SILREAGECLVNIHGQHEHQSLFR--TEKHLEWLDAYAGEPLGDRKRTYSSLYRQYESAR 174

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI----------AR-VEMINALSSLIMEY 215
                L                Q+ E+                 R +     L     E 
Sbjct: 175 SALRELEETSRKQMQMLDLYRFQLEEISSAQLQVGEDESLAEEKRKLTYAERLRDNAAEA 234

Query: 216 VQ----KENFPHIKLSLTGFLDG-KFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
            +    ++    I  +++   D   FD+S         ++L         +  +L
Sbjct: 235 YELLYGQQGLDAIGKAVSKLEDICSFDKSAIGP---LLEQLQSAFYQAEDAGYSL 286


>gi|255072825|ref|XP_002500087.1| predicted protein [Micromonas sp. RCC299]
 gi|226515349|gb|ACO61345.1| predicted protein [Micromonas sp. RCC299]
          Length = 1025

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 106/312 (33%), Gaps = 63/312 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD--- 63
           I  + ++ F  + +L + F  +    VG+NG GK+ +L A+S L+ G   R    A+   
Sbjct: 4   ILRVKLTNFMCHHNLEVEFGPRINFLVGENGSGKSAVLTALS-LALGVRARDTRRAEKGI 62

Query: 64  --VTRIGS------------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
               R G+                  P  +     VE        S K++ +D + V   
Sbjct: 63  SGFIREGANFAKVEVSIRNVGDDALDPDVYGDVITVERHITQNSSSYKIKGKDGKDVGSS 122

Query: 104 QINDVVIRVVDELNKHL--RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
           +  D +IR+ D  N  +   +  +     R F      + ++       +      +++ 
Sbjct: 123 R--DKLIRITDHFNIDVNNPVVVMSQDSSREFLHSGKAKDKYDFFTKATLLKEITNKLVY 180

Query: 162 FERLMRGRNRLLTEGYFD----SSWCSSIEAQ------MAELGVKINIARVEMINALSSL 211
            +  +   N L+ E   +     +    +E +      + EL  K+   R  +     + 
Sbjct: 181 IKEQISEMNNLIKEKEKELPDVRAELDRLEEEKNSFTKLQELKNKVKELRERL-----AW 235

Query: 212 IMEYVQKENFPHIKLSLTGFLDG--KFDQSFCALK--------------EEYAKKLFDGR 255
              Y  +    +I+  + G  D   K ++     K              EE+ ++L    
Sbjct: 236 AQVYQLETEQANIEAEVAGREDIMPKIEELIAKNKRLAEEERSKATAANEEFHRELEKNN 295

Query: 256 ----KMDSMSRR 263
               + D+   R
Sbjct: 296 LAIAERDAARNR 307


>gi|169335335|ref|ZP_02862528.1| hypothetical protein ANASTE_01747 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258073|gb|EDS72039.1| hypothetical protein ANASTE_01747 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1192

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 98/267 (36%), Gaps = 18/267 (6%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++   + ++FD + T  VG NG GK+NI++AI   L     +  R   
Sbjct: 1   MYLKKVEIYGFKSFGQKVEIIFDNKVTGIVGPNGSGKSNIVDAIRWVLGEQRVKTLRGGK 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             DV   G+    +  +A V          +  E  +    R L  +        E   +
Sbjct: 61  MEDVIFSGTEEKRALGYAFVSITIDNTTGILPSEYSEVNVSRRLYRSGE-----SEYYIN 115

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
                L   +  +F    + R  +       I+       +D + ++     ++      
Sbjct: 116 KNAVRLK-DVHELFMDTGLSREGYSIISQGKIESIVNNSAVDRKLMIEEAVGIVKYKTRK 174

Query: 180 SSWCSSIEAQMAELGVKINIAR-VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           +     ++        + N+ R +++I+ L S +    +        + L+  L G    
Sbjct: 175 NEALRKLDK------TQSNLYRILDIISELESRLPSLKRNSKKARKYIELSEELKGLELN 228

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTL 265
            F    ++Y ++L    + + + + TL
Sbjct: 229 LFVHKADKYKEELSKLDEDEKIMKDTL 255


>gi|159900189|ref|YP_001546436.1| hypothetical protein Haur_3672 [Herpetosiphon aurantiacus ATCC
          23779]
 gi|159893228|gb|ABX06308.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC
          23779]
          Length = 378

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +++  L I  FR + + ++    +  + VG N +GKT++LEAI   +    
Sbjct: 4  LQLNSLIIQNFRGFENFQINQLGRVNLIVGKNNIGKTSLLEAIWLYANRGS 54


>gi|7496566|pir||T15650 hypothetical protein C27A2.1 - Caenorhabditis elegans
          Length = 1154

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGF-RRASYAD 63
           +  +    F  Y     +  A   + +G NG GK++I+  I     G  +   R     +
Sbjct: 22  LLRVVFHNFLTYEHTSFLPTASLNMILGHNGSGKSSIICGICLACGGSPKSLGRSERIVE 81

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--IRVVDELNKHLR 121
             R G    +   A  +  +G   + + +   +    R   +ND       + +L KH  
Sbjct: 82  YIRHGCTEGYVEIAIADKQKGPQVVRLTIRVGEQPKYR---LNDSATTQSEIADLRKHYN 138

Query: 122 ISWLVP 127
           I    P
Sbjct: 139 IQIDNP 144


>gi|300123990|emb|CBK25261.2| unnamed protein product [Blastocystis hominis]
          Length = 1201

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 107/311 (34%), Gaps = 34/311 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + ++ + +  F++YA+  +   FD++     G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MYLEEIILDGFKSYANRTVISGFDSKFNAITGLNGSGKSNILDAICFVLGITNLSQVRVK 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETR-DDRSVRCLQIN 106
           +  ++  + G          +            G E    I++  +     R+   +Q +
Sbjct: 61  NLQELVYKQGQAGITKATVTLVFNNERSDQSPIGYEQYDRITVTRQVVIGGRNKYLIQGH 120

Query: 107 DVVIRVVDELNKHLRISWLVPSMD-------RIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
           +  +  V  L   ++++   P          ++ +    E    ++             +
Sbjct: 121 NAQVNQVQNLFHSVQLNVNNPHFLIMQGHITKVLNMKPKEILGMVEEACGTR-------L 173

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-ALSSLIMEYVQK 218
            + ++    +     +    S     +E  +     K+   R   +  A +S  +E + +
Sbjct: 174 YEMKKAQAQKTME-KKDVKVSEITKILEEDITPTLEKLRAQRSAYLQWASNSTEIERLHR 232

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
           +       S    L    +++    +E   +   +  K++ + R+       S    D  
Sbjct: 233 QETAFEYYSARQTLHDGAEENRLIAEELNLESAINRLKVEEIERKVKAIQSNSKASADAD 292

Query: 279 DKAITIAHGST 289
           + ++     S 
Sbjct: 293 ELSVREGRASH 303


>gi|254253821|ref|ZP_04947138.1| hypothetical protein BDAG_03100 [Burkholderia dolosa AUO158]
 gi|124898466|gb|EAY70309.1| hypothetical protein BDAG_03100 [Burkholderia dolosa AUO158]
          Length = 395

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 10/132 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS---- 60
           ++I+ + I  FR +   ++    +  + VG NG GK+ + +  SFL        A     
Sbjct: 1   MQIESIEIKNFRLFKDAKISRIPRLCVLVGANGTGKSTLFDVFSFLKDALAMNVAKAVTK 60

Query: 61  ---YADVT-RIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
              Y ++  R G       +   R+E       ++  L+   D++ R +   +++     
Sbjct: 61  RGGYRELASRGGEKEAIELTLQFRLEITGHERLVTYVLKIEPDKTGRAVVAREILRYKRG 120

Query: 115 ELNKHLRISWLV 126
                 R     
Sbjct: 121 SYGAPFRFLDFS 132


>gi|309809478|ref|ZP_07703336.1| putative chromosome partition protein smc [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170150|gb|EFO72185.1| putative chromosome partition protein smc [Lactobacillus iners SPIN
           2503V10-D]
          Length = 743

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 60/150 (40%), Gaps = 19/150 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A    + F+   T  VG NG GK+N+ EAI ++      +  R  +
Sbjct: 1   MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+   GS           G    A++ +  +  D    R L ++   + ++  + +  
Sbjct: 61  MRDIIFAGSE--------FRGPLNKAEVCLIFDNHD----RQLHLDSDKVAIMRRILRSG 108

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
              + + +           R  F+D  +  
Sbjct: 109 DSEYFINNQSVRLK---DIRTLFVDSGLSQ 135


>gi|259503550|ref|ZP_05746452.1| DNA repair protein RecN [Lactobacillus antri DSM 16041]
 gi|259168463|gb|EEW52958.1| DNA repair protein RecN [Lactobacillus antri DSM 16041]
          Length = 563

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 109/315 (34%), Gaps = 44/315 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L F  Q T+  G+ G GK+ I++A+  L+ GRG       +  R
Sbjct: 2   LQELTIDNLAIIKHLSLEFANQMTVLTGETGAGKSIIIDAVGLLAGGRG-----SQEFIR 56

Query: 67  IGSPSF-----FSTFARVE--------GMEGLADISIKLETRDDRSVRCLQINDVVIRV- 112
            G         F+  A  +        G++      I +          +++N  +I   
Sbjct: 57  RGEEKLRLQGQFALTADPDLAALLDSLGIDHEDGTLIIMREIHRSGRNTIRVNGQLINTT 116

Query: 113 -VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDP---RHRRRMIDFERLMR 167
            + ++  +L           +      +    LD+     + P   +++    D+ +L  
Sbjct: 117 MLRQIGAYLVDIQGQNEHQLLLQ--PEKHLGMLDQYASKQVQPLLNQYQELYQDYSKLKS 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG---------VKINIAR------VEMINALSSLI 212
             N+        +     +  Q+ E+G          ++   R       ++ NAL   +
Sbjct: 175 AVNKKQANEQQWAQRLDMLHYQVDEIGGAQLQTDEEERLTSERDRLEHFQQINNALQQAV 234

Query: 213 MEYVQKEN--FPHIKLSLTGFLDG-KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
             + + EN     + L +       +FD  + +L +      +  + + + + + L    
Sbjct: 235 ATFNEGENPVLDQVALVMEAVNGIAEFDDEYASLSKSLNDAYYALQDVANQAGQQLDLLE 294

Query: 270 RSDLIVDYCDKAITI 284
             D  +   D+ +T+
Sbjct: 295 FDDQRLAEIDQRLTV 309


>gi|238493087|ref|XP_002377780.1| nuclear condensin complex subunit Smc4, putative [Aspergillus
           flavus NRRL3357]
 gi|220696274|gb|EED52616.1| nuclear condensin complex subunit Smc4, putative [Aspergillus
           flavus NRRL3357]
          Length = 1294

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 10/91 (10%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +R+ IK L ++ F++YA  ++   F A  +  VG NG GK+N+++A+ F+    GFR + 
Sbjct: 88  SRMVIKTLILNNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDALLFVF---GFRASK 144

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                   +    +      F  VE      
Sbjct: 145 MRQGKISALIHNSADFPDLPFCEVEVHFQEV 175


>gi|58584222|ref|YP_203238.1| hypothetical protein XOO4599 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188579216|ref|YP_001916145.1| hypothetical protein PXO_03536 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58428816|gb|AAW77853.1| unknown protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188523668|gb|ACD61613.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 398

 Score = 54.1 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 10/132 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-------R 57
           ++I+ + I  FR + + +L    +  + VG NG GK+ + +  SFL             +
Sbjct: 1   MQIESIEIKNFRLFRNAKLTHVPRLCVLVGANGTGKSTLFDVFSFLKDALSMNVGKAIAK 60

Query: 58  RASYADVTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           R  Y +V   G    P  F+   R+E       ++  L+       R     +++     
Sbjct: 61  RGGYKEVASRGFAHEPIEFTLQFRLEITGRERLVTYVLKIAPGTGTRVEIERELLRYKRG 120

Query: 115 ELNKHLRISWLV 126
                 R     
Sbjct: 121 SYGAPFRFLDFA 132


>gi|125624542|ref|YP_001033025.1| chromosome segregation protein smc [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493350|emb|CAL98324.1| chromosome segregation protein smc [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071336|gb|ADJ60736.1| chromosome segregation protein SMC [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 1174

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 25/165 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++A   ++ FD   T  VG NG GK+NI+EA+   L     +  R   
Sbjct: 1   MYLKKMEIVGFKSFADKTKVEFDKGITAVVGPNGSGKSNIVEALRWVLGEQSAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLE------TRDDRSVRCLQINDVV 109
             DV   G+      ++    A  +  +       ++E                 +N   
Sbjct: 61  MPDVIFAGTEKRRALNYAEVIAHFDNSDHYLQGQDEIEEVVITRRLYRNGDSEFLMNGRK 120

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLD 145
            R + +++     + L      I S             ERR   +
Sbjct: 121 CR-LRDIHDLFTDTGLGRDSLSIISQGRIESVFNSKPEERRAIFE 164


>gi|221064757|ref|ZP_03540862.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
 gi|220709780|gb|EED65148.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
          Length = 595

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 60/363 (16%), Positives = 120/363 (33%), Gaps = 67/363 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           +++  + +  F N++ + +       + VG+N VGK+N +  +   L PG   R      
Sbjct: 1   MRVSRVRLINFANFSDVDVETGESI-VIVGENKVGKSNFIRGLQLILDPGLSER---DRQ 56

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           +   G   F+      + +    ++S+ L   T D R                 L  HL 
Sbjct: 57  L---GLEHFWDGLGE-DKVGATIEVSVDLTDFTNDPR-----------------LMAHLN 95

Query: 122 ISWLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
              + P       G  M  R   RF  +      P     + D+E ++         G  
Sbjct: 96  DCVIDP-------GPPMVARLTYRFQPKAGLGRAP---ESLKDYEYVI--------FGGD 137

Query: 179 DSSW--------CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSL 228
           D              I+ Q+A    +  +   R   +  L   +   +  +    I+  +
Sbjct: 138 DPDMRIGGALRRMLPIDVQVALRDAEKDLASWRNSPLRPLIEDLAASLDDDAREEIQDQV 197

Query: 229 T-GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL-IGPHRSD-----LIVDYCDKA 281
                +    +   A  E  +++L            +L + P R D     L +   +  
Sbjct: 198 DQAQRELAGHEEVVATAERISERLIAIAGGQHAVPVSLGLAPTRVDALLRSLRLLIDNGV 257

Query: 282 ITIAHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
             +   S G   ++ + +  L   RL+S+        +++E  AHL    +  ++R    
Sbjct: 258 RGVGDASLGTANLIFLALKSLELDRLVSDGERDHTFFVVEEPEAHLHPHVQRLIYRYFLG 317

Query: 341 IGS 343
            G+
Sbjct: 318 TGA 320


>gi|330960231|gb|EGH60491.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 1162

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 107/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS S            F ++   + G     A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELAFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++        G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNEQVGQREAVIGNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|312877327|ref|ZP_07737293.1| SMC domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795890|gb|EFR12253.1| SMC domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 735

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 25/46 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +  L I  +++    ++ F+    + VG N  GK+NI++A+  L
Sbjct: 1  MYVSELYIVNYKSIKKEKIKFNPGKNVLVGKNNAGKSNIIKALELL 46


>gi|322418046|ref|YP_004197269.1| SMC domain-containing protein [Geobacter sp. M18]
 gi|320124433|gb|ADW11993.1| SMC domain protein [Geobacter sp. M18]
          Length = 637

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +KI+ + I  FR YA   + FD  +T  VG NG GK+ IL A++       FR+   +
Sbjct: 1  MKIESVRIKNFRGYADETIFFD-NYTCLVGPNGAGKSTILSALNVF-----FRQYKDS 52


>gi|109130919|ref|XP_001091228.1| PREDICTED: structural maintenance of chromosomes protein 1A [Macaca
           mulatta]
          Length = 1196

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|89067816|ref|ZP_01155260.1| DNA repair protein RecN [Oceanicola granulosus HTCC2516]
 gi|89046414|gb|EAR52470.1| DNA repair protein RecN [Oceanicola granulosus HTCC2516]
          Length = 548

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 87/276 (31%), Gaps = 49/276 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F     +  G+ G GK+ +L+A+ F+   RG      A++ R
Sbjct: 2   LRNLDIRDMLIIDRLELDFQPGLNVLTGETGAGKSILLDALGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVV 113
            G+     T                E      D  + L   + R  R    +N    R  
Sbjct: 57  AGAEQGEVTALFDLPAGHPAEAVLAEAGIAAEDGELILRRVNSRDGRKTAWVNGT--RAT 114

Query: 114 DELNKHLRISWLV----PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---- 165
            EL + L    +          + +      R  LD    A     R    D+ +     
Sbjct: 115 GELLRRLSDVLVELHGQHDDRGLLN--PRGHRTLLDAFAGADLAPVRAAWRDWRQARGAL 172

Query: 166 ----------------MRGRNRLLTEGYFDSSWCSSIEAQ--MAELGVKINIARVEMINA 207
                           +R     L +   +     ++++Q  + +   +I         A
Sbjct: 173 DAAREAAGALRAEEEYLRHAVGELDKLGPEPGEEEALDSQRRLMQSAERIRTDIARAHAA 232

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           LS+   E +  +    +  +  G  +G+ D    AL
Sbjct: 233 LSNEGAEGLLGDAIRWLDGASAG-AEGRLDAPLEAL 267


>gi|148263167|ref|YP_001229873.1| chromosome segregation protein SMC [Geobacter uraniireducens Rf4]
 gi|146396667|gb|ABQ25300.1| condensin subunit Smc [Geobacter uraniireducens Rf4]
          Length = 1176

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +KIK L+I  F++ +  + L F    T  VG NG GK+N+++AI ++      +  R   
Sbjct: 1  MKIKRLDILGFKSFHDKVSLDFQQGITGIVGPNGCGKSNVVDAIRWVMGEQSAKNLRGKQ 60

Query: 61 YADVTRIGSP 70
            D+   GS 
Sbjct: 61 MEDIIFGGSE 70


>gi|332019593|gb|EGI60072.1| Structural maintenance of chromosomes protein 5 [Acromyrmex
           echinatior]
          Length = 1046

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 9/131 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I ++++  F  Y  + ++      + VG NG GK+ I+ AI     G+     R     +
Sbjct: 10  ITYIHLENFVTYDKVTVIPGRYLNVIVGPNGSGKSTIVAAIVLGLGGKPNIIGRALHIGE 69

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             + G  S       ++       I  ++ T++ +S+  +  N    + + E    L I 
Sbjct: 70  YVKYGRDSA-KIEIHLKNSFKQDSIITRIFTKEGKSIWMINGNHANSKNIQEFTSKLNIQ 128

Query: 124 W-----LVPSM 129
                  +P  
Sbjct: 129 VNNLCQFLPQD 139


>gi|322701867|gb|EFY93615.1| DNA repair protein Rad18, putative [Metarhizium acridum CQMa 102]
          Length = 1171

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 91/302 (30%), Gaps = 59/302 (19%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +  L +         VG+NG GK+ +L A++    G+     R  S   
Sbjct: 135 IESITCYNFMCHERLHVELGPLINFIVGENGSGKSAVLTALTLCLGGKASDTNRGGSLKS 194

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI------SIKLETRDDR--------SVRCLQINDVV 109
             + G     S   +++     A        SI +E    +             +I    
Sbjct: 195 FVKEGQDHG-SLVVKIKNAGSDAYQPDIYGDSILVERHFSKSGSSGFKIKNEQGRIISTK 253

Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRM 159
            + VDE+++   +    P        +   + S    ++ ++      +  +D  ++   
Sbjct: 254 KQEVDEISEWYALQMGNPLTVLSQDNARQFLNSATPSQKYKYFVSGVQLEQLDNDYKMSQ 313

Query: 160 IDFER--LMR------------------------GRNRLLTEGYFDSSWCSSIE-----A 188
              +R  ++R                         +N  L E                  
Sbjct: 314 DTLDRTIILRDDLSEKIAHVKKEMEDAQRLAETVQKNNTLRERARHYRNQLVWSQVVERE 373

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           Q  EL      AR + I  L    ++  +  +    KL     +    D+ + A++E  A
Sbjct: 374 QELELQNAELEARKQRIIQLEENCVKLSRALDDIMEKLERAKAIRNGLDEEYGAIEESIA 433

Query: 249 KK 250
             
Sbjct: 434 SA 435


>gi|312793802|ref|YP_004026725.1| SMC domain-containing protein [Caldicellulosiruptor
          kristjanssonii 177R1B]
 gi|312180942|gb|ADQ41112.1| SMC domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 735

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 25/46 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +  L I  +++    ++ F+    + VG N  GK+NI++A+  L
Sbjct: 1  MYVSELYIVNYKSIKKEKIKFNPGKNVLVGKNNAGKSNIIKALELL 46


>gi|254478558|ref|ZP_05091932.1| hypothetical protein CDSM653_1628 [Carboxydibrachium pacificum
          DSM 12653]
 gi|214035487|gb|EEB76187.1| hypothetical protein CDSM653_1628 [Carboxydibrachium pacificum
          DSM 12653]
          Length = 189

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLS 51
          +K+K + I  FR+   L   F ++   + VG N  GK+NI+ AI+ + 
Sbjct: 1  MKLKRVVIKNFRSIKHLEFEFPESNLLVLVGPNNSGKSNIIRAINLIC 48


>gi|207344010|gb|EDZ71291.1| YJL074Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1052

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 98/303 (32%), Gaps = 26/303 (8%)

Query: 79   VEGMEGLADISIKLETRDDRSVRCLQINDVV-IRVVDELNKHLRISWLVPSM------DR 131
            +E       + +K      +SV    I     +   +EL + +R   L+P          
Sbjct: 734  LEKANNQQRLLLKKLDNFQKSVEKTMIKKTTLVTRREELQQRIREIGLLPEDALVNDFSD 793

Query: 132  IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
            I S   ++R   ++  +  +   ++R   +F++    R  L            SI+  + 
Sbjct: 794  ITSDQLLQRLNDMNTEISGLKNVNKRAFENFKKFNERRKDLAERASELDESKDSIQDLIV 853

Query: 192  ELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            +L  +   A       +S       ++       KL +    D   D       +  A+ 
Sbjct: 854  KLKQQKVNAVDSTFQKVSENFEAVFERLVPRGTAKLIIHRKNDNANDHDESIDVDMDAES 913

Query: 251  LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST--GEQKVV-LVGIFLAHARLI 307
                   DS    T +        V +  K     H     G QK V  + + LA     
Sbjct: 914  NESQNGKDSEIMYTGVSIS-----VSFNSKQNEQLHVEQLSGGQKTVCAIALILA----- 963

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFM 365
                  A   L DEI A LD+  R A+  ++ ++   +Q   T       D L    KF 
Sbjct: 964  IQMVDPASFYLFDEIDAALDKQYRTAVATLLKELSKNAQFICTT---FRTDMLQVANKFF 1020

Query: 366  RIS 368
            R+ 
Sbjct: 1021 RVK 1023


>gi|148980258|ref|ZP_01815966.1| recombination and repair protein [Vibrionales bacterium SWAT-3]
 gi|145961352|gb|EDK26661.1| recombination and repair protein [Vibrionales bacterium SWAT-3]
          Length = 554

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 87/300 (29%), Gaps = 42/300 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR       A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRS-----DAGMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFLLENNLHATRWLEDNELLDGTECILRRTISKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+    ++         +     +  ++
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMK--SDYQMAMLDQYAGHLNLLKSTRNAYQTWRQADNHLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGV--------KINIARVEMINALSSLIMEYVQKE 219
                  +             ++ EL +        +    R+     L+S   + ++  
Sbjct: 175 ELRENSQQNQAQKQLLEYQIKELNELSIGEEEYEELEQEHKRLANSGELASTCQQAIELI 234

Query: 220 NFPHIKLSL--------TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
                  +L        +     + D+    L    ++ +    + +S  R  L      
Sbjct: 235 YEGEEVNALGILQSANHSLIQLAELDERLAELPNMLSEAIIQIEETNSELRTYLDSIDVD 294


>gi|213968902|ref|ZP_03397042.1| chromosome segregation SMC protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301385374|ref|ZP_07233792.1| chromosome segregation protein SMC [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063630|ref|ZP_07255171.1| chromosome segregation protein SMC [Pseudomonas syringae pv. tomato
           K40]
 gi|302133899|ref|ZP_07259889.1| chromosome segregation protein SMC [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926201|gb|EEB59756.1| chromosome segregation SMC protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 1162

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 106/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++        G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNEQVGQREAVIGNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|11595593|emb|CAC18213.1| related to SMC1 protein [Neurospora crassa]
          Length = 1241

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 99/287 (34%), Gaps = 37/287 (12%)

Query: 6   KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           K+  L +  F++Y     L+F D+  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3   KLIRLELFNFKSYKGHHTLLFGDSYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62  ADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            D+   G PS              + +    G E     +I      +      +IND V
Sbjct: 63  RDLVYRGHPSQRSSRNDPKTAWVMAVYEDDAGDEQRWKRTITNSGSSE-----YRINDRV 117

Query: 110 IRVV---------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRR 158
           +            + L K          ++ I S    +  R ++++  +++    + + 
Sbjct: 118 VTAQQYNDALEAENILIKARNFLVFQGDVEAIASQSPQDLTRLIEQISGSLEYKADYEKL 177

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ--MAELGVKINIARVEMINALSSLIMEYV 216
             + E+    +N  L      +S     + Q   AE   +    R E +       + + 
Sbjct: 178 QAEVEQAAENQNFQLHRRRGINSEIKQYQEQKKEAENFQRKTEERDEAVITHILWKLYHF 237

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
           QK        S       +  + F    E +  KL   RK  +   R
Sbjct: 238 QKVMDES---SAQIQEHQENLKEFRRNVEAFENKLDAARKEQATVGR 281


>gi|259417170|ref|ZP_05741089.1| chromosome segregation protein SMC [Silicibacter sp. TrichCH4B]
 gi|259346076|gb|EEW57890.1| chromosome segregation protein SMC [Silicibacter sp. TrichCH4B]
          Length = 1151

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 94/277 (33%), Gaps = 31/277 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+ ++   +  +  R   
Sbjct: 1   MRFSKLRLNGFKSFVDPTDLLIADGLTGVVGPNGCGKSNLLEALRWVMGETRAKAMRGGG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             DV   G     + +F     +++  E LA        + D   R  +      +   +
Sbjct: 61  MEDVIFAGTATRSARNFAEVSLQIDNSERLAPSGFNDSDQLDIVRRITRDVGSAYKANAK 120

Query: 116 LNKHLRISWL---------VPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             +   +  L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRAKDVQMLFADASTGAHSPALVRQGQISELINAKPKARRRVLE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSSLIMEYVQK 218
             E  ++ +N        D      +  Q+ +LG   K      E+   L       + +
Sbjct: 177 RHEAELKLKNTEQNLLRIDDV-IEQLATQLGQLGRQAKQAQRYREIGEKLRLAEGMLLYR 235

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
                 +  L    + +   +  A  E  A+   + R
Sbjct: 236 RWREADEARLAAEEELRTRVTQAAKAEALARVAGEKR 272


>gi|254441177|ref|ZP_05054670.1| hypothetical protein OA307_592 [Octadecabacter antarcticus 307]
 gi|198251255|gb|EDY75570.1| hypothetical protein OA307_592 [Octadecabacter antarcticus 307]
          Length = 600

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYA 62
          +++I  ++I EFR   SL           +G     KT +L+AI   L+P  GF   S  
Sbjct: 16 QMRIAHISILEFRGIKSLEWSPSPNVNCLIGPGDSCKTTVLDAIEIGLNPRFGF-SGSDP 74

Query: 63 DVTRIGSP 70
          D+   G  
Sbjct: 75 DL--FGCD 80


>gi|195978495|ref|YP_002123739.1| chromosome partition protein Smc [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975200|gb|ACG62726.1| chromosome partition protein Smc [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 1183

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 92/275 (33%), Gaps = 30/275 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A    ++FD   T  VG NG GK+N+ E++ +    +  +  R   
Sbjct: 1   MFLKEIQMQGFKSFADKTRIIFDKGVTAVVGPNGSGKSNVTESLRWALGEASAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGME---GLADISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      ++      ++  +     A   I++E    R+      I+   +R
Sbjct: 61  MPDVIFAGTEHRSPLNYAEVAVVLDNSDAFIKNAQKEIRVERHIYRNGDSDYLIDGKKVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L +          ++ IF+    ERR   +             ++ ++
Sbjct: 121 LRDIHELFMDTGLGRDSFSIISQGRVEEIFNSKPEERRAIFEEAAG---------VLKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
              +     L +   +      I  ++      +          L         + +   
Sbjct: 172 TRKKETQTKLNQTQDNLDRLDDIIYELEHQAGPLERQAKTARQFLDLDADRKQLQLDILV 231

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
             +          +++  AL+E+ A      + ++
Sbjct: 232 KDIEQDRMEQEAQEKALAALREDLAAYHRKRQSLE 266


>gi|86605432|ref|YP_474195.1| SbcC family exonuclease [Synechococcus sp. JA-3-3Ab]
 gi|86553974|gb|ABC98932.1| exonuclease, SbcC family [Synechococcus sp. JA-3-3Ab]
          Length = 1096

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 9  FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L +  F  Y+   L     HT    G NG GK+ +L+A+++   G+  R ++ +D+ R 
Sbjct: 5  RLTLHNFLCYSQAVLDLRGIHTACICGPNGAGKSALLDALTWGLWGQS-RASNDSDLIRK 63

Query: 68 GSPSFFSTFA 77
          G+   +    
Sbjct: 64 GASETWVEVV 73


>gi|34540533|ref|NP_905012.1| antigen PgaA [Porphyromonas gingivalis W83]
 gi|1296973|emb|CAA65182.1| pgaA [Porphyromonas gingivalis]
 gi|34396846|gb|AAQ65911.1| antigen PgaA [Porphyromonas gingivalis W83]
          Length = 445

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSP 52
          I  ++I EFR+   L L F     + +GDNG GKT++L+A    L  
Sbjct: 2  ISRIHIEEFRDIGDLELFFLPGVNLLIGDNGSGKTSVLKACQYVLGT 48


>gi|15678568|ref|NP_275683.1| intracellular protein transport protein [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|18201989|sp|O26640|RAD50_METTH RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|2621615|gb|AAB85046.1| intracellular protein transport protein [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 837

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ L +   R+Y S R+ FD   T+F GD G GKT +L A+ F   G G  +   + +
Sbjct: 1   MIIRSLELKNIRSYESGRVEFDDGVTLFEGDIGSGKTTLLLAVEFALFGLG-DQRGDSLL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
               +         V+G E      +K  +   +          V++ + 
Sbjct: 60  RATSNSGSVKLTFTVDGEEYTVYRELKRGSSGVQQGELYIRKQGVVKKLS 109


>gi|66819229|ref|XP_643274.1| structural maintenance of chromosome protein [Dictyostelium
          discoideum AX4]
 gi|74997287|sp|Q552D9|SMC3_DICDI RecName: Full=Structural maintenance of chromosome protein 3;
          Short=SMC protein 3; Short=SMC-3
 gi|60471390|gb|EAL69350.1| structural maintenance of chromosome protein [Dictyostelium
          discoideum AX4]
          Length = 1437

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 5  IKIKFLNISEFRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IKF+ I  FR+Y       +       +  G NG GK+N+  AI FL
Sbjct: 1  MFIKFIFIKGFRSYKDQGFTSITLHPGFNVVTGRNGAGKSNLFAAIRFL 49



 Score = 36.4 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 33/192 (17%), Positives = 62/192 (32%), Gaps = 22/192 (11%)

Query: 160  IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
              +  L   R+ L            +++    +    I      +    + +  E +   
Sbjct: 986  NQYNSLEARRDELYESNASIQLLIKTLDN---KKDEAIARTFSGVAKNFTQVFKELI--- 1039

Query: 220  NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
                 KL +   +D    +          K+  DG     +   T IG     +      
Sbjct: 1040 PGGSAKLVMKRQMDEDEGEGEDP------KEWADGETPKGLLTFTGIGIQ---VSFGEGH 1090

Query: 280  KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
            +  ++   S G++ +V + +  A        T  AP  LLDEI A LD + R A+ +++ 
Sbjct: 1091 EPCSMRQLSGGQKTLVALALIFAL-----QRTDPAPFYLLDEIDAALDHNYRVAVSKMIR 1145

Query: 340  D--IGSQIFMTG 349
                  Q   T 
Sbjct: 1146 KHSREIQFIATT 1157


>gi|331015923|gb|EGH95979.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 1162

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 106/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++        G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNEQVGQREAVIGNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|217967336|ref|YP_002352842.1| SMC domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217336435|gb|ACK42228.1| SMC domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 1082

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 97/270 (35%), Gaps = 39/270 (14%)

Query: 7   IKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRASYA 62
           +K L ++ F++   + ++ F  + T+  G NG GK+NIL+AI   L   R    R     
Sbjct: 4   LKSLELTNFKSFIGNNKIPFSQKFTVITGPNGSGKSNILDAIRWVLGEQRIKALRAEKTD 63

Query: 63  DVTRIGSPSFFS--TFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDE---- 115
           ++   G   F+S   +A+VE    + +    +  +  R       +N   +R+ D     
Sbjct: 64  EII-FGGNRFYSKANYAKVELCLNIFNEDYFISRKLYRDEDSEYYLNGKEVRLKDVQFFL 122

Query: 116 ----LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
               L K+  +      +D +    +   R  ++ +           +  +   ++    
Sbjct: 123 NNFGLGKYSFVFLGQGEIDELILKENGRIRELIENIAG---------ISGYHEKVKE--L 171

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL     +S W             ++   R E++  +  L  E    E +  +K  L   
Sbjct: 172 LLKLEVIESKW------------QELEEKRKELLGVIEELRAEVRIAERYNELKNKLEDV 219

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                  +   +KE   K L +  K++   
Sbjct: 220 RKTLAFINLRKIKENIEKYLIEKEKVEKRL 249


>gi|332363649|gb|EGJ41429.1| lantibiotic protection ABC superfamily ATP binding cassette
           transporter [Streptococcus sanguinis SK49]
          Length = 601

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 56/403 (13%), Positives = 117/403 (29%), Gaps = 55/403 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-------GFR 57
           +++K + I  FR Y    +V     T F+G N  GK+ ILEA+      +          
Sbjct: 1   MRLKQIKIKNFRGYKDETIVDFDNLTAFIGKNDAGKSTILEALEIFFNNKLVVCERDDLS 60

Query: 58  RASYADVTRIGS---PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             + +D   I                    L D ++     D    +  + +    +   
Sbjct: 61  VGADSDSIFITCIFDELPDEIVVDASSKTSLEDENLLNSNGDLEIKKTFKCSSAKPKPET 120

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           ++  +          D +    +  ++R +D  +             ++   +  N  + 
Sbjct: 121 KIICNHPTD--DNYNDLLLLKQADLKKRAVDLGI---------DEDSYD---KRSNVSIR 166

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           +    S     I+    E+  +       +I     +   +    +       +   +  
Sbjct: 167 QAILSSKRDLIIKEIELEVTKEDAKKVYGVIETFLPIYALFQSDRSSSDSDKEIADPMSV 226

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSM-SRRTLIGPHRSD--------------------- 272
              Q+   L+ E  K   + ++     + RTL      D                     
Sbjct: 227 AVSQALQELQTEINKIKSEVQQKAIETAGRTLAKLQEMDEDLAASLVPEFKSEPKFDSLF 286

Query: 273 -LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR--LISNTTGFAPILLLDEISAHLDED 329
            L +   +       GS G ++++L+  F A A   L       + I   +E        
Sbjct: 287 KLSIKSDNDISINKRGS-GVRRLILLNFFRAEAERKLSEAERNKSIIYAFEEPETSQHPS 345

Query: 330 KR----NALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
            +     A   + +   +QI +T T       L  TA    + 
Sbjct: 346 HQKLLIEAFLELASKENTQIILT-THTPALGGLLPTASLRLVE 387


>gi|330806912|ref|YP_004351374.1| hypothetical protein PSEBR_a236 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375020|gb|AEA66370.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 386

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 57/366 (15%), Positives = 108/366 (29%), Gaps = 52/366 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L ++ +R+   L +    +  +  G NG GK+N+  A+  L+            + R
Sbjct: 2   LKTLAVANYRSINKLVIPLG-RLNLITGPNGSGKSNLYRALRLLAETAQ--GGVVNALAR 58

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G           E    + +  + ++    +  + L++         E   +     L 
Sbjct: 59  EGGLDSTFWAGPEEISRRMRNGEVPVQAIVRQGTKRLRLG-----FAGEDFSYCIALGLP 113

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC--- 183
                 FS     +R  +        P  R        L+  RN  +       SW    
Sbjct: 114 EPSLSAFSLDPEIKRECIWAG-----PVFRPAS-----LLVDRNGPMIRAREGRSWDVLA 163

Query: 184 ------SSIEAQMAELGV--KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
                  S+  Q+  L    ++   R E I        ++ + +    ++    G     
Sbjct: 164 QHTPTFDSLFDQVGSLRTSPEVLQMR-EFIRRWR--FYDHFRSDADAPVRQPQLGTRTPV 220

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG---PHRSDLIVDYCDKAITIAHGSTGEQ 292
                  L       L  G   D  +    IG   P     I         IA    G  
Sbjct: 221 LHHDGRDLAAALQTILEIG---DVEALHAAIGDAFPGAHLHIEKLQGGRFAIAFQQHGLL 277

Query: 293 KVVLVG---------IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDI 341
           + +            + L  A L         +++L+E    L  D   AL R++    +
Sbjct: 278 RPLSAAELSDGTLRYLLLVAALLTPR---PPSLMVLNEPETSLHPDLLPALARLIIRASV 334

Query: 342 GSQIFM 347
             Q+++
Sbjct: 335 NCQVWV 340


>gi|300124053|emb|CBK25324.2| unnamed protein product [Blastocystis hominis]
          Length = 1199

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 107/311 (34%), Gaps = 34/311 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + ++ + +  F++YA+  +   FD++     G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MYLEEIILDGFKSYANRTVISGFDSKFNAITGLNGSGKSNILDAICFVLGITNLSQVRVK 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETR-DDRSVRCLQIN 106
           +  ++  + G          +            G E    I++  +     R+   +Q +
Sbjct: 61  NLQELVYKQGQAGITKATVTLVFNNERSDQSPIGYEQYDRITVTRQVVIGGRNKYLIQGH 120

Query: 107 DVVIRVVDELNKHLRISWLVPSMD-------RIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
           +  +  V  L   ++++   P          ++ +    E    ++             +
Sbjct: 121 NAQVNQVQNLFHSVQLNVNNPHFLIMQGHITKVLNMKPKEILGMVEEACGTR-------L 173

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-ALSSLIMEYVQK 218
            + ++    +     +    S     +E  +     K+   R   +  A +S  +E + +
Sbjct: 174 YEMKKAQAQKTME-KKDVKVSEITKILEEDITPTLEKLRAQRSAYLQWASNSTEIERLHR 232

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
           +       S    L    +++    +E   +   +  K++ + R+       S    D  
Sbjct: 233 QETAFEYYSARQTLHDGAEENRLIAEELNLESAINRLKVEEIERKVKAIQSNSKASADAD 292

Query: 279 DKAITIAHGST 289
           + ++     S 
Sbjct: 293 ELSVREGRASH 303


>gi|255083520|ref|XP_002504746.1| condensin complex component [Micromonas sp. RCC299]
 gi|226520014|gb|ACO66004.1| condensin complex component [Micromonas sp. RCC299]
          Length = 1170

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 94/282 (33%), Gaps = 33/282 (11%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + ++ + I  F++YA   +   FD       G NG GK+NIL++I F   ++     R A
Sbjct: 1   MYVEEVCIDGFKSYAQRTVVPAFDPLFNAITGLNGSGKSNILDSICFVLGITNLSQVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++  + G          +            G E    I +  +       + L IN 
Sbjct: 61  SLQELVYKQGQAGVTKASVSITFNNADKSRSPVGYEHCDQIIVTRQIVIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMID 161
            V +     N    +   V +   +           M+    L  +  A   R      D
Sbjct: 120 HVAQPTRVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILGMLEEAAGTRMYETKKD 179

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-ALSSLIMEYVQKEN 220
               ++    L  +          +E ++     K+   R + +   L +  +E +++  
Sbjct: 180 --AALK---TLEKKQTKVDEIDKLLEEEILPTIEKLRKERGDYMKWQLGNDSLERLRRFC 234

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
                      ++G+  +   A+K +  +   D R  D  ++
Sbjct: 235 VAWEFSRCKEAVEGQ-SEGETAVKSQLEE--LDARAHDRAAQ 273


>gi|117938776|gb|AAH03279.1| Smc1a protein [Mus musculus]
 gi|118599981|gb|AAH25590.1| Smc1a protein [Mus musculus]
          Length = 679

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|313902579|ref|ZP_07835979.1| SMC domain protein [Thermaerobacter subterraneus DSM 13965]
 gi|313467145|gb|EFR62659.1| SMC domain protein [Thermaerobacter subterraneus DSM 13965]
          Length = 404

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I+ + +  +++ A+  +      T+ VG NG GK+N L+A+ F++     R  +     R
Sbjct: 8  IQSVRVRNYKSIAACEVHLS-HVTVLVGPNGSGKSNFLDALRFVADA--LRT-TLEHAIR 63

Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDD 97
                     R  G     DI +K+  RD 
Sbjct: 64 -DRGGINEVRRRSHGHPHNFDIELKVNLRDG 93


>gi|309804249|ref|ZP_07698326.1| RecF/RecN/SMC N-terminal domain protein [Lactobacillus iners
           LactinV 11V1-d]
 gi|308163652|gb|EFO65922.1| RecF/RecN/SMC N-terminal domain protein [Lactobacillus iners
           LactinV 11V1-d]
          Length = 743

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 26/193 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A    + F+   T  VG NG GK+N+ EAI ++      +  R  +
Sbjct: 1   MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS              F   +    L    + +  R  RS      IN+  +R
Sbjct: 61  MRDIIFAGSEFRGPLNKAEVCLIFDNYDRQLHLDSDKVAIMRRILRSGDSEYFINNQSVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161
           + D         L+++         +D+I +  + +RR   +    V        ++++ 
Sbjct: 121 LKDIRTLFVDSGLSQNSLAIISQGKVDQILNSQAEDRRYIFEEAAGVLHFKQ---QKLVA 177

Query: 162 FERLMRGRNRLLT 174
            ++L    N L+ 
Sbjct: 178 LKKLDETNNNLIR 190


>gi|125855523|ref|XP_001334257.1| PREDICTED: structural maintenance of chromosomes protein 1B-like
           isoform 1 [Danio rerio]
          Length = 1235

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 8/126 (6%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K L++  F+++     +    +    +G NG GK+N+++A+ F+   R    R     D
Sbjct: 4   LKQLDVENFKSWRGKQTIGPFKRFNCIIGTNGSGKSNVMDALGFVMGERAANLRVKHTRD 63

Query: 64  VTRIGSP--SFFSTFARVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           +   G+   +  STFA V  +  G  D  +    R         +N   +  + +    L
Sbjct: 64  LI-HGAHIGNPVSTFASVTMIYCGDNDEEMTFSRRISGESSEYLVNGKHV-TLAKYTGEL 121

Query: 121 RISWLV 126
           +   +V
Sbjct: 122 QKIGIV 127


>gi|310822922|ref|YP_003955280.1| Chromosome segregation protein SMC [Stigmatella aurantiaca
          DW4/3-1]
 gi|309395994|gb|ADO73453.1| Chromosome segregation protein SMC [Stigmatella aurantiaca
          DW4/3-1]
          Length = 1198

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          ++IK L+I+ F+++       FD   T  VG NG GK+N+++AI +       +  R   
Sbjct: 1  MRIKRLDITGFKSFMDRSVFSFDDGVTGIVGPNGCGKSNVVDAIRWAMGEQSAKNLRGRG 60

Query: 61 YADVTRIGSPS 71
            DV   GS S
Sbjct: 61 MEDVIFNGSES 71


>gi|297566459|ref|YP_003685431.1| SMC domain-containing protein [Meiothermus silvanus DSM 9946]
 gi|296850908|gb|ADH63923.1| SMC domain protein [Meiothermus silvanus DSM 9946]
          Length = 1080

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASY 61
           +KI  L +  F+++     L F +  T  VG NG GK+N++EA+ ++  +  R  R    
Sbjct: 1   MKIDRLILQGFKSFGERTVLEFGSGVTGIVGPNGSGKSNLVEALRWVVGAKPRELRGEEA 60

Query: 62  ADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVR 101
             +   GS +     F      +        +S +L+   +  VR
Sbjct: 61  QALLFHGSDARAPMPFAEVVLELSRGSERLTVSRRLDRDGEAEVR 105


>gi|49481967|gb|AAT66695.1| DNA repair and genetic recombination protein [Bacillus
           thermantarcticus]
          Length = 573

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 92/280 (32%), Gaps = 51/280 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G        A +EG+           +  A++ I +                   ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLDNENHPCYDKCAEVGIDISEGMVVLRREIFANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMID 161
            ++   ++ ++   L           +           LD      + A    +R     
Sbjct: 112 KLVTTSILRDIGSTLVDIHGQHEHQELM--DPSRHLPLLDEYGGAEIAAALEEYRAVYEK 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210
           +E+L +   +L       +     +  Q+ E+           ++   +V+++N   +  
Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQVNEDEQLMEEKVKIVNFQKIYE 229

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247
            +    +  +     L   G      +       ALKE Y
Sbjct: 230 ALKHSYEALSGEQRGLDWIGLAMSHLEDVASINPALKEAY 269


>gi|307822263|ref|ZP_07652495.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]
 gi|307736829|gb|EFO07674.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]
          Length = 572

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K + + I  FR       +      T  VG N  GKTNIL+AI  +  G
Sbjct: 1  MKFEAIRIKNFRTIEGEQEIELGHGIT-IVGPNSSGKTNILKAIEMVFTG 49


>gi|160876013|ref|YP_001555329.1| ATP-binding protein involved in virulence-like protein
          [Shewanella baltica OS195]
 gi|160861535|gb|ABX50069.1| ATP-binding protein involved in virulence-like protein
          [Shewanella baltica OS195]
          Length = 453

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)

Query: 5  IKIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNIL----EAI 47
          + I+ L I  FR+ + L L    + +   FVG+NG  KT+IL    EAI
Sbjct: 1  MNIQNLKIHNFRSISKLDLNLGTENRVVCFVGENGSAKTSILSLIAEAI 49



 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 17/108 (15%)

Query: 283 TIAHGSTGEQKVVL-----VGIFLAHARLISNTTGF----------APILLLDEISAHLD 327
            I+  S GE  +++     +   L H R  +                 I+L+DEI  HL 
Sbjct: 256 PISSFSQGELDLLVTVASILSRQLFHFRYYTEDQKKDSGLNTLFDIPGIVLVDEIDLHLH 315

Query: 328 EDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
              + +  + +TDI    Q  +T     V   L   +K + + + +  
Sbjct: 316 PRAQESYIKTLTDIFPNIQFIITTHSPFVVRGLPNHSKVVNLPSGRVF 363


>gi|293377373|ref|ZP_06623577.1| DNA repair protein RecN [Enterococcus faecium PC4.1]
 gi|292644065|gb|EFF62171.1| DNA repair protein RecN [Enterococcus faecium PC4.1]
          Length = 560

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56

Query: 67  IGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            G+          +   EG +++ ++L    D     ++ +
Sbjct: 57  QGAEKCILEGLFELPKQEGFSELMVELGIETDEDNLIVRRD 97


>gi|289670127|ref|ZP_06491202.1| recombination protein N [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 554

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 54/279 (19%), Positives = 95/279 (34%), Gaps = 40/279 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSPSF--------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-- 110
            G+                  S  A  E ++  A   ++   R D   R   IN   +  
Sbjct: 57  HGADRAELSAEFQLPAEHPGLSWLADNE-LDDEAQCQLRRIIRADGGSRA-WINGRPVTS 114

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMR 167
             + EL   L           + +  S      LD   R     +   R+    ++ L+ 
Sbjct: 115 SQLAELASRLVEIHGQHEHQALMARHSQL--ALLDAYARNSAQREQV-RQASQRWQALLD 171

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQKENFPH 223
            R+ L  +G   S     +E Q+AEL       R ++    I AL               
Sbjct: 172 ERDALSAQGDV-SDRIGFLEHQLAEL------EREDLDPAAIAALDVNHRRQAHATALIG 224

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
              S+   L+G    S   L ++    +    + +    
Sbjct: 225 ACDSVAQQLNGDDGASALGLLQDSRHDIARVAEHEPRLG 263


>gi|170017431|ref|YP_001728350.1| hypothetical protein LCK_01079 [Leuconostoc citreum KM20]
 gi|169804288|gb|ACA82906.1| Protein of unknown function [Leuconostoc citreum KM20]
          Length = 796

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 5/102 (4%)

Query: 261 SRRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
            R T I     D++V   D     I   STG Q+ + V + LA +++I++       +L+
Sbjct: 693 ERYTNITFSGDDIVVMTADHQAFNIVELSTGTQEQLYVALRLALSQVIADVVSVP--ILI 750

Query: 320 DEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
           D+   + D+ +R+ +  I+  +    Q+F   T++   D LN
Sbjct: 751 DDGFVNFDQQRRDNMIVILKSLSINQQVFYFTTERYHHDQLN 792


>gi|71082822|ref|YP_265541.1| SMC family chromosome segregation protein [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|71061935|gb|AAZ20938.1| chromosome segregation protein SMC family [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 857

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 26/166 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++ K + ++ F+++A     + +   T  VG NG GK+NI+E++ ++   +  +  R + 
Sbjct: 1   MEFKKIQLNGFKSFAEKTNFLIEHGLTGIVGPNGCGKSNIVESLRWVMGETSAKSMRGSG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEG--------LADISIKLETRDDRSVRCLQIND 107
             DV   G     S +       V+            L  I ++ +   D+  +   IND
Sbjct: 61  MEDVIFNGTSNKSSKNIAEVSISVDNASHDGPMQYKDLDHIEVRRKIEKDKGSK-FYIND 119

Query: 108 VVIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             +R  D       L      PSM        + +    +RR  L+
Sbjct: 120 KEVRARDAQMFFADLSTGAHSPSMISQGRIGALVTAKPTDRRAILE 165


>gi|37523420|ref|NP_926797.1| hypothetical protein gll3851 [Gloeobacter violaceus PCC 7421]
 gi|35214424|dbj|BAC91792.1| gll3851 [Gloeobacter violaceus PCC 7421]
          Length = 500

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          +  L IS F+N  ++ + F    T   G NGVGK+N+ +AI+FLS    +
Sbjct: 2  LTRLKISGFKNLVNVDVRFGP-FTCIAGANGVGKSNLFDAITFLSSLASY 50


>gi|289164295|ref|YP_003454433.1| hypothetical protein LLO_0948 [Legionella longbeachae NSW150]
 gi|288857468|emb|CBJ11296.1| hypothetical protein LLO_0948 [Legionella longbeachae NSW150]
          Length = 581

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 67/391 (17%), Positives = 135/391 (34%), Gaps = 62/391 (15%)

Query: 3   NRIKIKFLNISEFRNYASL--RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +R ++  + I  FR+  ++   +  D    + VG N  GK++IL A   +        + 
Sbjct: 20  SRPRLHKIIIQNFRSIGNIPIEIELDD-IVVLVGPNNAGKSSILRAYEIVM---SH-GSK 74

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK-- 118
              +T    P+   +       E L  I ++    +++  +         R + EL    
Sbjct: 75  VGKLTIDDFPNGVVSS------EFLPTIELQTIIYENKPGK---------RWLTELGNNE 119

Query: 119 -HLRISWL--VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR-NRLLT 174
             +R  W+   P+ D +  G  ++   + D + +         + +  R +  R +   T
Sbjct: 120 YLIREIWIWDSPNKDPVRKGFDVQVNDWNDAVPWG-----APNVANARRPLPHRIDAFAT 174

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                      I + + E    I     + I+    LI+E ++K     +K +       
Sbjct: 175 PEQHAKELTELISSILKEKIAAIKSTPEQEISD-YELILEQIKKLQINVVKATEDEITKI 233

Query: 235 KFDQSFCALKEEYAKKLFDGR--------KMDSMSRRTLIGPHRSDLIVDYCDKA----I 282
           + D S       Y  +LF           + D     T   P +S+       K      
Sbjct: 234 EEDISI------YVNRLFPKHSVKFDAKPESDLDKLYT---PFKSNPEFRLGTKDGYFSP 284

Query: 283 TIAHGSTGEQKVVLVG-IF-LAHARLISNTTGFAPILLLDEISAHLDE----DKRNALFR 336
               GS G ++ ++   +  L+  + I N T    +LL+DE    L      + R  L+ 
Sbjct: 285 IELQGS-GARRTLVWAVLKYLSDFKGIENETSRPHVLLMDEPEICLHPSAIREARKILYD 343

Query: 337 IVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
           + +    Q+ +T       D   +    +R+
Sbjct: 344 LPSSGNWQVIVTSHSPVFIDLSKDNTTIIRV 374


>gi|229591995|ref|YP_002874114.1| putative chromosome partition protein [Pseudomonas fluorescens
           SBW25]
 gi|229363861|emb|CAY51329.1| putative chromosome partition protein [Pseudomonas fluorescens
           SBW25]
          Length = 1162

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 106/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLIGEYAAYAEISIRRKVTRDSQN-SYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKGEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++        G+ +      +  +   + + R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNDQVGQRESIIGTQEISFEALVAEQRNADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|328862083|gb|EGG11185.1| hypothetical protein MELLADRAFT_74124 [Melampsora larici-populina
           98AG31]
          Length = 1132

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYA-SLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + I  L +  F++Y     +  FD       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MHILELILDGFKSYPVRTTISGFDPSFNAVTGLNGSGKSNILDAICFVLGITNLSAVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          V            G E  A++++  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTVVFDNRDKTKAPVGFEQYAEVTVTRQILMGGATKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
                    N    +   + + + +    
Sbjct: 120 HRSTQNSVQNLFQSVQLNINNPNFLIMQG 148


>gi|311993383|ref|YP_004010248.1| gp46 recombination endonuclease subunit [Acinetobacter phage Acj9]
 gi|295917340|gb|ADG60011.1| gp46 recombination endonuclease subunit [Acinetobacter phage Acj9]
          Length = 560

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 92/294 (31%), Gaps = 50/294 (17%)

Query: 5   IKIKFLNISEFRNY-----ASLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           +KI  L    +RN        + +     H T+  G NG GK+ ++EAI++   G+ FR+
Sbjct: 1   MKIFKLKEIVYRNLLAVGSEPITINLQKSHKTLVTGSNGAGKSTLIEAITYALFGKPFRK 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD---- 114
                +      S       V+      +    +      +V  +  + V +        
Sbjct: 61  IKLGQLIN----SVNKKDLWVQLTMEYDNHEYIIRRGQKPAVFEIIRDGVPLDSAASTGD 116

Query: 115 -----------ELNKHLRISWL-----VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
                        N + ++  L      P MD    G    RR+ ++ ++          
Sbjct: 117 FQAQFEEMIGMNYNSYKQVVVLGTAGYTPFMDL---GAPA-RRKLVEDLLE------VAV 166

Query: 159 MIDFERL----MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM- 213
           +   ++L    ++  N  L+E     S   +    +     +      + +  L  ++  
Sbjct: 167 LAQMDKLNKDQIKEVNAKLSETDLRISHTQAQTQTLMAADERQQKLSGDNVARLEEMLDD 226

Query: 214 -----EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
                E ++ E     +  L   L          L +  A+     R +  + +
Sbjct: 227 VKAQVEQLKSETLELNEEILKTILPEDVYPEIQTLAQRQAEVETQQRPLARVLQ 280


>gi|307706646|ref|ZP_07643453.1| DNA repair protein RecN [Streptococcus mitis SK321]
 gi|307618101|gb|EFN97261.1| DNA repair protein RecN [Streptococcus mitis SK321]
          Length = 555

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 23/207 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G+E   +I I+ E          ++N  ++ + 
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLEMGDEIIIRREI-LQNGRSISRVNGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+               F D   + +   ++     + ++ +  
Sbjct: 116 VLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDTAFWTLKETYQTSFDAYRKMRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVK 196
             +        +    +E QMAE+   
Sbjct: 176 LEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|281204953|gb|EFA79147.1| structural maintenance of chromosome protein [Polysphondylium
          pallidum PN500]
          Length = 1217

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRASY 61
          + I  L ++ F++Y     +    Q +  +G NG GK+N++EAI F+   +    R  + 
Sbjct: 1  MVIVSLEVNNFKSYKGHHVIGTFKQFSCIIGPNGSGKSNLMEAIIFVLGYKSSQIRGTNL 60

Query: 62 ADVT 65
           D+ 
Sbjct: 61 TDLI 64


>gi|167045288|gb|ABZ09946.1| putative SMC family, C-terminal domain protein [uncultured marine
           crenarchaeote HF4000_APKG9P22]
          Length = 1169

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 85/284 (29%), Gaps = 43/284 (15%)

Query: 5   IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRA 59
           + IK ++I  F+++   +  + F+       G NG GK+NIL+AI F       R  R+ 
Sbjct: 2   VHIKKVDIFGFKSFGFKNTSVNFEPGLVSISGPNGSGKSNILDAIVFAMGENKARVMRQP 61

Query: 60  SYADVTR-IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           +   +   I          RV      +D  I +++      R +      +  +D    
Sbjct: 62  NLRSLIHDIDGNRHGPKLTRVRVQFDNSDRKIPVDSDTVTITREMNDKGESVYHMDSKKI 121

Query: 119 HLRISWLVPS----------------MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           +      +                  + RI    S E+R+ ++ +V      +       
Sbjct: 122 NRNRILDIFEVANANLSPLNAVQQGTVTRISEMSSEEKRKTIEDLVGL---SYFDEK--- 175

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSSLIME 214
                 +   L +            A+M E+  +I           R E I         
Sbjct: 176 ------KTESLKQLTEADQRLEVAMAKMGEVKKQIDELEVERNLKLRYEFIGRELDRFRA 229

Query: 215 YVQKENFPHIKLSLTGFLDG-KFDQSFCALKEEYAKKLFDGRKM 257
               E    IK   T   +    D S     E+    L D    
Sbjct: 230 IDAAEKLREIKSEKTVKEEKYNNDSSETERLEKLRSTLRDEISK 273



 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 27/199 (13%)

Query: 183  CSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
               +E + + L   +  IA    +   +       +K      + ++  F++G       
Sbjct: 957  IEILEKEESSLAASLNAIAPQRYVEVSTGYHSMSSRKNELEAERNAVVSFIEGIEKNKRQ 1016

Query: 242  ALKEEYAKKLFDGRKMDSMSRRTLIGP-----HRSDLI-------VDYCDKAITIAHG-S 288
               + +     D    +  ++           +  D+        + + +K    +   S
Sbjct: 1017 TFLDAFDTV--DNEIREIFTKMNGGNAWLELENEDDIFNAGISYFIQFPNKPKRESTSIS 1074

Query: 289  TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD--IGSQIF 346
             GE+ +  V   LA  RL       +P  L DEI AHLD     +L +IV +   GSQ  
Sbjct: 1075 GGEKTLAAVVFVLALQRL-----KPSPFYLFDEIDAHLDAPNAESLAKIVEERSKGSQFI 1129

Query: 347  MTGTDKSVFDSLNETAKFM 365
            M     S+ DS+ E AK +
Sbjct: 1130 M----VSLKDSVVEKAKLI 1144


>gi|78045777|ref|YP_361952.1| hypothetical protein XCV0221 [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
 gi|78034207|emb|CAJ21852.1| hypothetical protein XCV0221 [Xanthomonas campestris pv.
          vesicatoria str. 85-10]
          Length = 169

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRG 55
          I+ L +  F+ +    + FD +  I  G N  GK++IL+AI   LS  R 
Sbjct: 4  IERLILKNFKKFRDFDVSFDDKLNILAGGNEAGKSSILQAIDLALSSSRS 53


>gi|257389041|ref|YP_003178814.1| chromosome segregation protein SMC [Halomicrobium mukohataei DSM
          12286]
 gi|257171348|gb|ACV49107.1| chromosome segregation protein SMC [Halomicrobium mukohataei DSM
          12286]
          Length = 1192

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + IK L +  F+++    R+ F    T+  G NG GK+NI+++I F   L+   G R   
Sbjct: 1  MHIKELVLDNFKSFGRKTRIPFYEDFTVVTGPNGSGKSNIIDSILFALGLARTSGIRAEK 60

Query: 61 YADVT 65
            D+ 
Sbjct: 61 LTDLI 65


>gi|157273413|gb|ABV27312.1| chromosome segregation protein SMC [Candidatus
          Chloracidobacterium thermophilum]
          Length = 1261

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          ++++ L +  F+++  +  ++F    T  VG NG GK+NI++AI   L     R  R + 
Sbjct: 2  LRLEKLELRGFKSFCDTTEILFHPGVTAIVGPNGCGKSNIVDAITWVLGEQSARNLRGSK 61

Query: 61 YADVTRIG 68
            DV   G
Sbjct: 62 MEDVIFNG 69


>gi|91762755|ref|ZP_01264720.1| chromosome segregation protein SMC family protein [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91718557|gb|EAS85207.1| chromosome segregation protein SMC family protein [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 857

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 26/166 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++ K + ++ F+++A     + +   T  VG NG GK+NI+E++ ++   +  +  R + 
Sbjct: 1   MEFKKIQLNGFKSFAEKTNFLIEHGLTGIVGPNGCGKSNIVESLRWVMGETSAKSMRGSG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEG--------LADISIKLETRDDRSVRCLQIND 107
             DV   G     S +       V+            L  I ++ +   D+  +   IND
Sbjct: 61  MEDVIFNGTSNKSSKNIAEVSISVDNASHDGPMQYKDLDHIEVRRKIEKDKGSK-FYIND 119

Query: 108 VVIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             +R  D       L      PSM        + +    +RR  L+
Sbjct: 120 KEVRARDAQMFFADLSTGAHSPSMISQGRIGALVTAKPTDRRAILE 165


>gi|293400483|ref|ZP_06644628.1| hypothetical protein HMPREF0863_00767 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305509|gb|EFE46753.1| hypothetical protein HMPREF0863_00767 [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 980

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 77/222 (34%), Gaps = 40/222 (18%)

Query: 1   MTNRIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGF 56
           M   + +K + +  F+++A   +  FD+     VG NG GK+NI +AI   L     +  
Sbjct: 1   MEAPMFLKRIELQGFKSFADKSIITFDSDVIGIVGPNGCGKSNINDAIRWVLGEQSVKSL 60

Query: 57  RRASYADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
           R  S +DV   GS              F ++   +       +++ +L  +         
Sbjct: 61  RGTSMSDVIFNGSTERKPVNMAEVTLVFDNSRHIMNVDFEEVEVTRRLHRQSGEGE--YF 118

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRH 155
           IN    R + ++   +  + L      I S             ERR   +          
Sbjct: 119 INKTPCR-LKDIVNLVMDTGLGRGSLSIISQGNISAFADAKPEERRALFEEAAG------ 171

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +  ++   + +N  L +        S +E  + EL  ++
Sbjct: 172 ---VAKYK---KRKNESLGKLNRTQENLSRLEDIIMELERQV 207


>gi|116207744|ref|XP_001229681.1| hypothetical protein CHGG_03165 [Chaetomium globosum CBS 148.51]
 gi|88183762|gb|EAQ91230.1| hypothetical protein CHGG_03165 [Chaetomium globosum CBS 148.51]
          Length = 1169

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F     + VG NG GK+N   AI F
Sbjct: 1  MHIKQIIIQGFKSYKDQTVIEPFSPGTNVIVGRNGSGKSNFFAAIRF 47



 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 72/217 (33%), Gaps = 20/217 (9%)

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              R R ++  +      +++    +      R++LL       +   SIE  +  L  + 
Sbjct: 927  ESRLRKVNEALKKYKHINKKAFDQYNSFTTQRDQLLKRRKELDTSQMSIETLIEHLDQEK 986

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            + A       +S       +K     H +L +    D    +      +E         +
Sbjct: 987  DEAIERTFKQVSREFATIFEKLVPAGHGRLVIQRKADRANKKGNAEESDE---------E 1037

Query: 257  MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
               +   T +G   S       D+   I   S G++ +  + +  A           +P 
Sbjct: 1038 PTGVESYTGVGISVS-FNSKVMDEQQKIQQLSGGQKSLCALCLIFAL-----QAAESSPF 1091

Query: 317  LLLDEISAHLDEDKRNALFRIV----TDIGSQIFMTG 349
            ++ DE+ A+LD   R A+  ++     +  +Q   T 
Sbjct: 1092 VIFDEVDANLDAQYRTAVASLLMSISEEQKTQFICTT 1128


>gi|330879148|gb|EGH13297.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 1162

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 106/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++        G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNEQVGQREAVIGNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|312869939|ref|ZP_07730078.1| chromosome segregation protein SMC [Lactobacillus oris PB013-T2-3]
 gi|311094524|gb|EFQ52829.1| chromosome segregation protein SMC [Lactobacillus oris PB013-T2-3]
          Length = 1188

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  L I  F+++A+   + F+   T  VG NG GK+NI+EAI ++   +     R   
Sbjct: 1   MQLLSLTIDGFKSFANKTTIKFEEGMTGIVGPNGSGKSNIIEAIRWVMGEQSARHLRGDK 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDD-----RSVRCL 103
             DV   G+ +            F ++   +        I+ KL    D        +  
Sbjct: 61  MVDVIFNGAANRAPLNRALVSITFDNSDHYLASDFNELTITRKLFRNGDSEYLLNGNKVR 120

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
             + V + +   L +          ++ IF+G   +RR  ++ +      ++R+     E
Sbjct: 121 LKDIVDLFIDSGLGRESFSIISQGRIEAIFNGKPEDRRAIIETVAG--VAKYRKNKQTAE 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
           R +      L       S  +S    +A+   
Sbjct: 179 RRLGQTMDNLNRVNDIISELASQLEPLADQSA 210


>gi|190341569|gb|ACE74861.1| RecN [Enterobacter sp. KM877_04]
          Length = 553

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 71/202 (35%), Gaps = 16/202 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-----RRASY 61
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR       R A+ 
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGRAEGDMVRRGANR 61

Query: 62  ADV-TRI---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD+  R     +P+        +  +G   +  ++ + D RS   +    V +  + EL 
Sbjct: 62  ADLCARFSLKDTPAALRWLEENQLEDGRECLLRRVISSDGRSRGFINGTAVPLSQLRELG 121

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + L       +  ++      +++  LD       +  +   H R+     R +    + 
Sbjct: 122 QLLIQIHGQHAHQQLIK--PEQQKTLLDGYAGEYALTQLMAEHYRQWHQSCRELAQHQQQ 179

Query: 173 LTEGYFDSSWCSSIEAQMAELG 194
             E    +        ++ E  
Sbjct: 180 SQERAARAELLEYQLKELNEFS 201


>gi|306818923|ref|ZP_07452644.1| DNA repair protein RecN [Mobiluncus mulieris ATCC 35239]
 gi|304648325|gb|EFM45629.1| DNA repair protein RecN [Mobiluncus mulieris ATCC 35239]
          Length = 578

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 92/306 (30%), Gaps = 37/306 (12%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           T  + I+ L I      +   L F    T+  G+ G GKT +L ++++L  G   R +  
Sbjct: 3   TPEM-IESLRIENLGTISHAELGFSPGFTVITGETGAGKTMLLTSLNWL-LGAQPRAS-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL- 120
             +   GS S       +      A +       +D  V   +I     R    L     
Sbjct: 59  --LVAAGSESAVVEGTFLVDASAAAVVMEAGGVVEDGVVEAARIVPAQSRSKAHLGGRTV 116

Query: 121 --RISWLVPSMDRIFSGLSMERRRFLDRMVFAID-------PRHRRRMIDFERLMRGRNR 171
                    +      G + + R  L       +         H+  +  + +       
Sbjct: 117 PAATLGTFGADLVSVHGQATQSR--LRGEKAQREAVDEFGGKTHQAALQTYAKA------ 168

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTG 230
              E    +      E        +    R E++  LS        ++  F  +  +++ 
Sbjct: 169 -WEEWEAATKDLEIWEENF-----ETRQRRREVLEHLSEEFQALAPEDGEFEELTATISR 222

Query: 231 FLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
             + +  +        AL ++   ++     +D   R       +   + D  D   + +
Sbjct: 223 LSNVENLRENATAALVALDDDSEIQVGANALVDIALRAMEKVTQQDGSLADLADMVASAS 282

Query: 286 HGSTGE 291
           + S GE
Sbjct: 283 Y-SLGE 287


>gi|227550449|ref|ZP_03980498.1| DNA repair protein RecN [Enterococcus faecium TX1330]
 gi|227180350|gb|EEI61322.1| DNA repair protein RecN [Enterococcus faecium TX1330]
          Length = 560

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56

Query: 67  IGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            G+          +   EG +++ ++L    D     ++ +
Sbjct: 57  QGAEKCILEGLFELPKQEGFSELMVELGIETDEDNLIVRRD 97


>gi|255084349|ref|XP_002508749.1| predicted protein [Micromonas sp. RCC299]
 gi|226524026|gb|ACO70007.1| predicted protein [Micromonas sp. RCC299]
          Length = 1077

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL--EAISFLSPGRGF-RRASY 61
           +K++   +  F  Y+ + +    +  + +G NG GK++ +   A+   +P +   R    
Sbjct: 51  MKVR---LHNFMTYSDVEMEPGPRLNVILGPNGTGKSSFVCALAMGLAAPTKILGRADKV 107

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           A+  + G    +     + G      + ++ E           IN   +
Sbjct: 108 AEYVKRGEEKGWCEI-TLRGERPDKPLVVRREMSRSAGSGRYLINGYPV 155


>gi|126660524|ref|ZP_01731630.1| hypothetical protein CY0110_02502 [Cyanothece sp. CCY0110]
 gi|126618167|gb|EAZ88930.1| hypothetical protein CY0110_02502 [Cyanothece sp. CCY0110]
          Length = 351

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 9  FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           L +  F +Y    L F   HT    G NG GK+++LEAI++   G+  R AS  D+  
Sbjct: 5  QLTLKNFLSYRETVLDFRGLHTACICGANGAGKSSLLEAITWAIWGKS-RTASDEDIIH 62


>gi|154253844|ref|YP_001414668.1| hypothetical protein Plav_3408 [Parvibaculum lavamentivorans DS-1]
 gi|154157794|gb|ABS65011.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
          Length = 594

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 117/363 (32%), Gaps = 67/363 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           +++  + +  F N++ + +       + VG+N VGK+N +  +   L PG   R      
Sbjct: 1   MRVSRVRLINFANFSDVDVETGESI-VIVGENKVGKSNFIRGLQLILDPGLSER---DRQ 56

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           +   G   F+      + +    ++S+ L   T D R                 L  HL 
Sbjct: 57  L---GLEYFWDGLGE-DKVGATIEVSVDLTDFTNDPR-----------------LMAHLN 95

Query: 122 ISWLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
              + P       G  M  R   RF  +      P     + D+E ++         G  
Sbjct: 96  DCVINP-------GPPMVARLTYRFQPKAGLGRAP---ESLKDYEYII--------FGGN 137

Query: 179 DSSWC--------SSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSL 228
           D              I+ Q+A    +  +   R   +  L   +   +  +    I+  +
Sbjct: 138 DPDMLIGGALRRMLPIDVQVALRDAEKDLASWRNSPLRPLIEDLAASLDDDAREEIQNQV 197

Query: 229 -TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL-IGPHRSD-----LIVDYCDKA 281
                +    +   A  E  +++L            +L + P R D     L +   +  
Sbjct: 198 DEAQRELAGHEEVVATAERISERLIAIAGGQHAVPVSLGLAPTRVDALLRSLRLLIDNGV 257

Query: 282 ITIAHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
             +   S G   ++ + +  L   R +S         +++E  AHL    +  ++R    
Sbjct: 258 RGVGDASLGTANLIFLALKSLELDRFVSEGERDHTFFVVEEPEAHLHPHVQRLVYRYFLG 317

Query: 341 IGS 343
             +
Sbjct: 318 TRA 320


>gi|71064639|ref|YP_263366.1| DNA repair protein [Psychrobacter arcticus 273-4]
 gi|71037624|gb|AAZ17932.1| possible DNA repair protein [Psychrobacter arcticus 273-4]
          Length = 559

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 71/206 (34%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L + +F   A   L       +  G+ G GK+ +L+A+S     R     +   + R
Sbjct: 2   LVSLTLHQFALIAQHELSVAEGFNVITGETGAGKSLLLDALSLCVGER-----ADMAMVR 56

Query: 67  IGSPSF--------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+                    FA+ E      ++ I+ +  +    +   +N   + +
Sbjct: 57  HGAAHADIYAQFDVENNPVIAEWFAKNERALEEPEVLIRRQLNNTGRSKA-WLNGTPVSL 115

Query: 113 --VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM--VFAIDPRHRRRMIDFERLMRG 168
             +  L   L       +   +         ++LD M  + ++  +       +++L R 
Sbjct: 116 AELKSLGSLLVNIHSQHAQQALLK--PQFVVQWLDEMAQITSLTTKTTSSYQQYQQLKRR 173

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG 194
            + L +           +++Q+A++ 
Sbjct: 174 ADDLASREAQRQDRIQLLQSQLADIA 199


>gi|195400036|ref|XP_002058624.1| GJ14526 [Drosophila virilis]
 gi|194142184|gb|EDW58592.1| GJ14526 [Drosophila virilis]
          Length = 1105

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 14/155 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-- 63
           KI  + +  F  +++L + F       VG NG GK+ ++ A++ L      R  S A   
Sbjct: 81  KIISIRLRNFMCHSNLYINFGPHINFLVGSNGSGKSAVITALA-LGLAGSARNTSRASSI 139

Query: 64  --VTRIGSPSFFSTFARVEG-------MEGLADISIKLETRDDRSVRCLQI--NDVVIRV 112
             + + G  +                       I++  + R   S   ++   N  V + 
Sbjct: 140 QKLIKNGETNASIELTLCNTGLRPFKYDVYGPHITVVRQIRQSSSTYEMRDAQNRCVSKK 199

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147
           +DE+ + L    +              R    D  
Sbjct: 200 LDEIRRLLLYFGISVENPIFVLNQEASREFLKDLE 234


>gi|312962452|ref|ZP_07776943.1| chromosome segregation protein SMC [Pseudomonas fluorescens WH6]
 gi|311283379|gb|EFQ61969.1| chromosome segregation protein SMC [Pseudomonas fluorescens WH6]
          Length = 1162

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 106/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLIGEYAAYAEISIRRKVTRDSQN-SYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKGEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++        G+ +      +  +   + + R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNDQVGQREAIIGTQEISFEALVAEQRNADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|281202074|gb|EFA76279.1| structural maintenance of chromosome protein [Polysphondylium
           pallidum PN500]
          Length = 1990

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 51/149 (34%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + I+ + +  F++Y+        D       G NG GK+N+L++I F   ++  +  R  
Sbjct: 1   MFIEEIILDGFKSYSKRTTVGPLDPTFNAITGLNGSGKSNVLDSICFVLGITNLKQVRVN 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
              ++  + G          +            G E    I++  +       + L IN 
Sbjct: 61  DLQELVYKHGQAGVTKASVTIVFNNEDPETSPVGYESSKRITVTRQIAIGGRSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
           +  +     N  L +   V +   +    
Sbjct: 120 INAQNNRVQNLFLSVQLNVNNPHFLIMQG 148


>gi|156051446|ref|XP_001591684.1| hypothetical protein SS1G_07130 [Sclerotinia sclerotiorum 1980]
 gi|154704908|gb|EDO04647.1| hypothetical protein SS1G_07130 [Sclerotinia sclerotiorum 1980
          UF-70]
          Length = 1262

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K++ L +  F++Y    + L  D+  T  +G NG GK+N ++AISF+   +    R A  
Sbjct: 3  KLQRLELFNFKSYKGHHVLLFGDSYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSAQL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|145616092|ref|XP_001415168.1| hypothetical protein MGG_13522 [Magnaporthe oryzae 70-15]
 gi|145009858|gb|EDJ94514.1| hypothetical protein MGG_13522 [Magnaporthe oryzae 70-15]
          Length = 1119

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 16/137 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           +  +    F  +  L +         VG+NG GK+ IL AI+    G+     R  S   
Sbjct: 141 LLRVECVNFMCHERLNVELGPLMNFIVGENGSGKSAILTAITVCLGGKASSTNRAGSLKA 200

Query: 64  VTRIGSPSFF-STFARVEGMEG------------LADISIKLETRDDRSVRCLQINDVVI 110
           + + G      S   + EG++                 S    +      +  +I     
Sbjct: 201 LVKSGQQQAILSVTIKNEGLDAFQHDIYGDSITVERHFSTTGSSGFKVKSKSGRIIGTKK 260

Query: 111 RVVDELNKHLRISWLVP 127
            +V+E+ ++  +    P
Sbjct: 261 ALVEEIVEYFCLQVDNP 277


>gi|32766679|gb|AAH55212.1| Smc1a protein [Danio rerio]
          Length = 414

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 21/177 (11%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKTLKD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F +   + +G + L+   I +    E R +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVTMVYQQDGGQELSFSRIIIGSSSEYRINNKVVGLSDYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +  L K         +++ I      ER    + +      R      +++R  + 
Sbjct: 123 KLGILVKARNFLVFQGAVESIAMKNPKERTALFEEI-----SRSGELAQEYDRCKKE 174


>gi|89073741|ref|ZP_01160255.1| hypothetical ATP-dependent endonuclease, OLD family protein
           [Photobacterium sp. SKA34]
 gi|89050516|gb|EAR56008.1| hypothetical ATP-dependent endonuclease, OLD family protein
           [Photobacterium sp. SKA34]
          Length = 552

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + IS FR    L L F  + T+ +G+N  GK+++L+A+           +  ++ 
Sbjct: 1   MHLERIEISGFRGIKRLSLSF-KELTVLIGENAWGKSSLLDALCLAL-------SPDSEF 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
                  F    A   G E   +I I L   +D   
Sbjct: 53  YEFNFSDFHIDHAL--GNERATEIQIVLHWHEDYKG 86


>gi|293571742|ref|ZP_06682761.1| DNA repair protein RecN [Enterococcus faecium E980]
 gi|291608199|gb|EFF37502.1| DNA repair protein RecN [Enterococcus faecium E980]
          Length = 560

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56

Query: 67  IGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            G+          +   EG +++ ++L    D     ++ +
Sbjct: 57  QGAEKCILEGLFELPKQEGFSELMVELGIETDEDNLIVRRD 97


>gi|195144940|ref|XP_002013454.1| GL23399 [Drosophila persimilis]
 gi|194102397|gb|EDW24440.1| GL23399 [Drosophila persimilis]
          Length = 1235

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++ + +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LESIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVARSCYVTAKFILNE-EKHMDFQRAVISGSSEYRINGESVSSSTYLNKL 144


>gi|170684247|ref|YP_001744533.1| SMC domain-containing protein [Escherichia coli SMS-3-5]
 gi|170521965|gb|ACB20143.1| SMC domain protein [Escherichia coli SMS-3-5]
          Length = 452

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 123/397 (30%), Gaps = 52/397 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           + I+ L ++    +  L +            T+F+G+NG GKT+IL++++        R 
Sbjct: 2   MNIRTLKLTNLGRFEELEVHLAPVEEFKSNVTVFIGNNGAGKTSILKSLATSLSWFVARV 61

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            +       G+ S     A + G    A I +++      +        ++ R       
Sbjct: 62  RTEK-----GNGSPIPEDAILNGR-SSATIELQVLNTHPATEAATPYRWLLARTASGKKS 115

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
               S    S    F      +       + A  P   R ++D    ++ R+  L    +
Sbjct: 116 TTASSLQEASQLAAFYRDQYTQNSGASFPLIAFYPV-ERVVLDVPLKIKERHNFLQLDGY 174

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D++    I+                               EN   +   +   L  + D 
Sbjct: 175 DNALNQGID-----------------FRRFFEWFRNREDAENESGLPQDVLDKLSTRIDL 217

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIG---PHRSDLIVDY----------CDKAITIA 285
               L       +   R     + RT I    P  S+L V              + + + 
Sbjct: 218 DNTVL-NALTAIMASSRDRQLTAVRTAISRFMPGFSNLRVRRKPRLHMSIDKNGQTLNVL 276

Query: 286 HGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
             S GE+ ++ +       LA    ++ N      I+L+DE+  HL    +  + + +T 
Sbjct: 277 QLSQGEKSLMALVGDIARRLAMMNPMLENPLNGEGIVLIDEVDMHLHPTWQRTIIQRLTT 336

Query: 341 IG--SQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
                Q  +T     V     +      + N +   +
Sbjct: 337 TFPHCQFVLTTHSPLVISDYKDVL-VYSLDNGELTQL 372


>gi|151945253|gb|EDN63502.1| structural maintenance of chromosomes [Saccharomyces cerevisiae
            YJM789]
          Length = 1230

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 55/303 (18%), Positives = 98/303 (32%), Gaps = 26/303 (8%)

Query: 79   VEGMEGLADISIKLETRDDRSVRCLQINDVV-IRVVDELNKHLRISWLVPSM------DR 131
            +E       + +K      +SV    I     +   +EL + +R   L+P          
Sbjct: 912  LEKANNQQRLLLKKLDNFQKSVEKTMIKKTTLVTRREELQQRIREIGLLPEDALVNDFSD 971

Query: 132  IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
            I S   ++R   ++  +  +   ++R   +F++    R  L            SI+  + 
Sbjct: 972  ITSDQLLQRLNDMNTEISGLKNVNKRAFENFKKFNERRKDLAERASELDESKDSIQDLIV 1031

Query: 192  ELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            +L  +   A       +S       ++       KL +    D   D       +  A+ 
Sbjct: 1032 KLKQQKVNAVDSTFQKVSENFEAVFERLVPRGTAKLIIHRKNDNANDHDESIDVDMDAES 1091

Query: 251  LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST--GEQKVV-LVGIFLAHARLI 307
                   D+    T +        V +  K     H     G QK V  + + LA     
Sbjct: 1092 NESQNGKDNEIMYTGVSIS-----VSFNSKQNEQLHVEQLSGGQKTVCAIALILA----- 1141

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFM 365
                  A   L DEI A LD+  R A+  ++ ++   +Q   T       D L    KF 
Sbjct: 1142 IQMVDPASFYLFDEIDAALDKQYRTAVATLLKELSKNAQFICTT---FRTDMLQVADKFF 1198

Query: 366  RIS 368
            R+ 
Sbjct: 1199 RVK 1201



 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60
           + IK + I  F+ Y +  +   F     + +G NG GK+N   AI F+        +R  
Sbjct: 1   MYIKRVIIKGFKTYRNETIIDNFSPHQNVIIGSNGSGKSNFFAAIRFVLSDDYSNLKREE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR-DDRSVRCLQINDVVIRVVDELNKH 119
              +   GS       A VE +    D S+ L +    R    + I   V    D+   +
Sbjct: 61  RQGLIHQGS-GGSVMSASVEIVFHDPDHSMILPSGVLSRGDDEVTIRRTVGLKKDDYQLN 119

Query: 120 LRIS 123
            R  
Sbjct: 120 DRNV 123


>gi|87308470|ref|ZP_01090611.1| ABC transport protein, ATP-binding subunit [Blastopirellula
          marina DSM 3645]
 gi|87289027|gb|EAQ80920.1| ABC transport protein, ATP-binding subunit [Blastopirellula
          marina DSM 3645]
          Length = 396

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          +KI  L+I  FR+  S          + +G N  GK+N+L A+  LS   G R
Sbjct: 1  MKIVQLDIEGFRSLKSQSWRPGD-LNVVIGPNASGKSNLLRALEMLSAAAGER 52


>gi|330963252|gb|EGH63512.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 1162

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 106/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++        G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNEQVGQREAVIGNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|301112485|ref|XP_002998013.1| structural maintenance of chromosomes protein, putative
           [Phytophthora infestans T30-4]
 gi|262112307|gb|EEY70359.1| structural maintenance of chromosomes protein, putative
           [Phytophthora infestans T30-4]
          Length = 1235

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 70/196 (35%), Gaps = 35/196 (17%)

Query: 6   KIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYA 62
           +I  L +  F++Y    +V    + T  +G NG GK+N+++AISF+     R  R     
Sbjct: 3   RIARLELENFKSYGGYHVVGPFHRFTAVIGPNGSGKSNLMDAISFVLGVHSRQLRSNQLR 62

Query: 63  DVTRI--------GSPSFFSTFARVEGMEGLADISIKLETRDD----------RSVRCLQ 104
           D+           G  +F +    +   E     S+  + +            +     +
Sbjct: 63  DLVHKAPTDTATTGRSAFVTLVYELSADETPPSKSLAAQNQQKEVKFTRLISEKGAGSYR 122

Query: 105 INDVVI---------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           I+   +         + +  L K          ++ I S    E  +  +++  + +   
Sbjct: 123 IDGQDVSSEGYQNQLKEIGILVKSRNFLVFQGEVESIASKSPTELTKLFEQISMSDE--- 179

Query: 156 RRRMIDFERLMRGRNR 171
                ++ERLM  ++ 
Sbjct: 180 --LKNEYERLMEEKDA 193


>gi|218201677|gb|EEC84104.1| hypothetical protein OsI_30422 [Oryza sativa Indica Group]
          Length = 1039

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 87/266 (32%), Gaps = 27/266 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA--ISFLSPGRG-FRRASYAD 63
           I  + +  F  ++SL +          G NG GK+ +L A  I+F S  +   R A+  D
Sbjct: 5   ISRIRLENFMCHSSLHIELGQHVNFITGQNGSGKSAVLTALCIAFGSRAKSTQRAAALKD 64

Query: 64  VTRIGSPSFFSTFARVEGMEGLADIS-----IKLETRDDRSVRCLQINDVVIRVVD---- 114
             + G              E           ++LE R   S   + + D   R V     
Sbjct: 65  FIKTGCSYAAIIVDINNQGEDAFKPEVYGDLVRLERRITESSSSMFLKDQHGRKVAHRKD 124

Query: 115 ---ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
              E+ +H  I    P           + R FL       + + + +      L++  N 
Sbjct: 125 DLIEIIEHFNIDVENPC----VIMSQDKSREFLHSG----NNKDKFKFFFKATLLQHVND 176

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL           + ++ + EL   I  A +E ++ L   I      E   H   +L   
Sbjct: 177 LLLAIR---ELLDNADSVVQELEKSIKPAMME-LDELQQKIKNMEHIEEIAHEIDNLKKK 232

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM 257
           L   +        EE   KL   ++ 
Sbjct: 233 LAWSWVYDVDRQIEEQTVKLLKLKER 258


>gi|254456403|ref|ZP_05069832.1| smc protein [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083405|gb|EDZ60831.1| smc protein [Candidatus Pelagibacter sp. HTCC7211]
          Length = 857

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 26/166 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++ K + ++ F+++A     + +   T  VG NG GK+NI+E++ ++   +  +  R + 
Sbjct: 1   MEFKKIQLNGFKSFADKTNFLIEEGLTGIVGPNGCGKSNIVESLRWVMGETSAKSMRGSG 60

Query: 61  YADVTRIGSPS-FFSTFARV---------EGMEGLAD---ISIKLETRDDRSVRCLQIND 107
             DV   G+ +      A V         EG     +   IS++ +   D+  +   IND
Sbjct: 61  MEDVIFSGTSNKASKNIAEVSIDVDNKNNEGPVQYREVDQISVRRKIEKDKGSK-FYIND 119

Query: 108 VVIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             +R  D       L      PSM        + +    +RR  L+
Sbjct: 120 KEVRARDAQMFFADLSTGAHSPSMISQGRIGALVTAKPTDRRAILE 165


>gi|162455814|ref|YP_001618181.1| hypothetical protein sce7532 [Sorangium cellulosum 'So ce 56']
 gi|161166396|emb|CAN97701.1| hypothetical protein sce7532 [Sorangium cellulosum 'So ce 56']
          Length = 456

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 58/407 (14%), Positives = 131/407 (32%), Gaps = 71/407 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---------R 57
           I  + I  F+++    L  +   ++ +G NG GK+N+L+A+S L+   G          R
Sbjct: 13  ITRIEIDGFKSFQGFALDLEP-FSVLIGPNGAGKSNLLDALSLLARLAGSPLAAAVGEGR 71

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                   R       +      G   LA +++ +E    RS   + + DV ++      
Sbjct: 72  GRIREQFRRRDEEPTTTVE---RGFGALASMALAIEVILPRSAVRVGLRDVPLQATRLRY 128

Query: 118 KH-LRISWLVPSMDRIFSGLSMERRRFLDRMVFA-IDPRHRRRMI--------DFERLM- 166
           +  + +  L    +R+     + R    D   +    P    R+         ++ER + 
Sbjct: 129 EVNIELQQLSSMRERLTVVREVLRSMTSDEDAWLRRHPAFASRLRHGDGGALVEYERALT 188

Query: 167 -------RGRNRLLTEGYFDSSWCSSIEAQ-----MAELGVKINIARVEMINALSSLIME 214
                  +       +   ++++ S  E Q     +  +  +++  RV  + A    I E
Sbjct: 189 VADPSASQFSMTATVQYVPEATFLSEPEMQARSPHLRAVAEELSGLRVLHLEA--QRIRE 246

Query: 215 YVQKENFPHIKLS-----LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
               E     +LS     L   L  +   +   ++ + A  +   R  + +     +   
Sbjct: 247 --PSEPGAPARLSTDGANLAATLAAQSPGAIAEIRADVASLVPGVRTFEVVVEGDTLVVQ 304

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
                     + +     S G  +++ +   L            + ++ ++E    L   
Sbjct: 305 ME----TSDGQRLPSRVLSDGTLRILALSTAL-------RADASSALIAIEEPENGLHPA 353

Query: 330 KRNALFRIVTDIGS---------------QIFMTGTDKSVFDSLNET 361
           +   L   + +                  Q+ +T     V  +L + 
Sbjct: 354 RVRTLIERILEATQRPVASDTESAAAGTAQVLITSHSPVVLAALMDH 400


>gi|148379838|ref|YP_001254379.1| DNA repair protein recN [Clostridium botulinum A str. ATCC 3502]
 gi|153932953|ref|YP_001384136.1| DNA repair protein recN [Clostridium botulinum A str. ATCC 19397]
 gi|153937847|ref|YP_001387676.1| DNA repair protein recN [Clostridium botulinum A str. Hall]
 gi|148289322|emb|CAL83418.1| DNA repair protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928997|gb|ABS34497.1| DNA repair protein RecN [Clostridium botulinum A str. ATCC 19397]
 gi|152933761|gb|ABS39260.1| DNA repair protein RecN [Clostridium botulinum A str. Hall]
          Length = 567

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  F     L + FD    +  G+ G GK+ +++AIS++  G+ F      D+ R
Sbjct: 2  LLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGK-F----NRDLIR 56

Query: 67 IGSP-SFFSTFARVEGMEGLA 86
           G   ++      +E      
Sbjct: 57 TGENKTYVEAIFSIENESTER 77


>gi|282896259|ref|ZP_06304281.1| DNA repair protein RecN [Raphidiopsis brookii D9]
 gi|281198755|gb|EFA73634.1| DNA repair protein RecN [Raphidiopsis brookii D9]
          Length = 573

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 61/206 (29%), Gaps = 24/206 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L L F     +  G+ G GK+ IL+AI  +  GR       + V R
Sbjct: 2   LLSLRIDNFALIDQLELDFGPGLNVLTGETGAGKSIILDAIDAVLGGR-----VSSRVIR 56

Query: 67  IGSPSFFSTFAR----------VEGMEGLAD-----ISIKLETRDDRSVRCLQINDVVIR 111
            G+                    E    L D     IS ++           ++N V++ 
Sbjct: 57  TGTNRAVVEGTFSITPFLATWLTEQEIDLIDDNSLVISREITASGINIRSRSRVNGVLVN 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERLMR 167
                +    +  +      +    S + R +LD      +     +       ++   +
Sbjct: 117 RQIMTSLRDCMVEITAQGQTLQVRQSAQLRDWLDIYGGEDIIQHRQKVSTAYAAYQEAHK 176

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
              +              +  Q+ EL
Sbjct: 177 NLEKRRRSEKERLQQLDLLTYQIQEL 202


>gi|84393163|ref|ZP_00991927.1| putative ATP/GTP-binding protein [Vibrio splendidus 12B01]
 gi|84376215|gb|EAP93099.1| putative ATP/GTP-binding protein [Vibrio splendidus 12B01]
          Length = 585

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 55/379 (14%), Positives = 115/379 (30%), Gaps = 87/379 (22%)

Query: 5   IK--IKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           +K  +    +  +R+  ++      +   I  G+N +GKTN+LEA +       F   S 
Sbjct: 1   MKYNLVRFEVKNYRSLLNVGFDISNSAPVILCGENNIGKTNVLEAFNLF-----FNHISD 55

Query: 62  ADVTRI--------------GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           + V                 G+ +F +  A  +  +G     ++ + +   + +      
Sbjct: 56  SSVNHYPPNDIPHHITYGSGGAGNFTNLAATFDTEKGKCKAEVRFDKKGQITYKVTYDKS 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
             I         +         D IF      R   ++       P+    +   E L++
Sbjct: 116 TPITSEAIFKSIVDT------FDYIFI-----RSNNINM------PKIVSHLFSSEGLLK 158

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
             ++   +                          +E +          +       + + 
Sbjct: 159 LDSKRGKQSKP-----------------------LETLRTFQEEAQHALNDIEKE-LNIE 194

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           +   +   F +    +K  +A+     +  D+++  T I            D    +  G
Sbjct: 195 MEKIVSNDFYERAPRIKISFAE---FNKLRDAVANMTEIT----------LDDGNDLHIG 241

Query: 288 STGE--QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV----TDI 341
           S G   Q++VL+ +     + I   T    I  LDE    L    +  LF+ +       
Sbjct: 242 SKGSGAQRLVLLSL----MKYIGKNTDKNVIWALDEPEVFLQPRLQKKLFKSLKQHSQQS 297

Query: 342 GSQIFMTGTDKSVFDSLNE 360
             Q  +T T    F  L +
Sbjct: 298 NEQTILT-THSQHFVDLTD 315


>gi|293568309|ref|ZP_06679633.1| DNA repair protein RecN [Enterococcus faecium E1071]
 gi|291589021|gb|EFF20845.1| DNA repair protein RecN [Enterococcus faecium E1071]
          Length = 560

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56

Query: 67  IGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            G+          +   EG +++ ++L    D     ++ +
Sbjct: 57  QGAEKCVLEGLFELPKQEGFSELMVELGIETDEDNLIVRRD 97


>gi|261855543|ref|YP_003262826.1| ATPase-like protein [Halothiobacillus neapolitanus c2]
 gi|261836012|gb|ACX95779.1| ATPase-like protein [Halothiobacillus neapolitanus c2]
          Length = 356

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          IK   +  FR+   L L   ++  I VG +  GKT  LEAI     G
Sbjct: 2  IKSFAVENFRSLKQLELSNLSRVNILVGRSASGKTAALEAIRIALTG 48


>gi|300771867|ref|ZP_07081738.1| Smc family chromosome segregation protein [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761253|gb|EFK58078.1| Smc family chromosome segregation protein [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 1180

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 109/313 (34%), Gaps = 45/313 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++  L I  F+++   + + F+   T  VG NG GK+N+++AI ++      R  R   
Sbjct: 1   MQLTKLEIKGFKSFGDKITINFNDGVTAIVGPNGCGKSNVVDAIRWVMGEQSTRALRSEK 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             ++   G+ +   +  A V          +  E       R L        ++NDV  R
Sbjct: 61  MENIIFNGTKNRKPANLAEVSLTFNNTKNILPTEFSTVNITRKLYRNGESEYRLNDVKCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L         +  +D I +     RR   +             +  ++
Sbjct: 121 LKDITDLFLDTGLGADTYSIIELKMIDEIINNKDNSRRNLFEE---------ASGISKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
              +     L E   D    S ++  + E+G  +     + +   +    +Y + K+ + 
Sbjct: 172 VRKKQTLSKLKETEND---LSRVDDLLFEIGKNL-----KSLENQAKKADKYFRLKDEYK 223

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
              +SL  F    F Q    L+E+        ++      ++ IG   ++L     D   
Sbjct: 224 DASVSLAYFKLADFSQDLEKLEEQ-----EAAQQEVIQQNQSQIGLQETELQEKKKDILA 278

Query: 283 TIAHGSTGEQKVV 295
              + S  +QK  
Sbjct: 279 KEKNLSV-QQKST 290


>gi|162456573|ref|YP_001618940.1| hypothetical protein sce8290 [Sorangium cellulosum 'So ce 56']
 gi|161167155|emb|CAN98460.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 375

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 2/46 (4%)

Query: 7  IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  L +S +R+   ++R+ F  + T+ VG NG GK+N+++A+ F++
Sbjct: 2  INHLTVSNYRSLGENVRIHFG-KLTVLVGPNGSGKSNVMDALRFVA 46


>gi|57640952|ref|YP_183430.1| chromosome segregation ATPase [Thermococcus kodakarensis KOD1]
 gi|57159276|dbj|BAD85206.1| chromosome segregation ATPase [Thermococcus kodakarensis KOD1]
          Length = 1189

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 104/320 (32%), Gaps = 65/320 (20%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
           I+ + +  F++Y    + +      T  VG NG GK+NI +A+ F+  G      R +  
Sbjct: 5   IEKIEMKGFKSYGNKKVVVPLARGFTAIVGANGSGKSNIGDAVLFVLGGLSAKAMRASRI 64

Query: 62  ADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-------VIRVV 113
           +D+   GS     + +A V       D    ++  +    R +  +              
Sbjct: 65  SDLIFAGSKGEPPAKYAEVAMYFNNEDRGFPIDEDEVVIKRRVYPDGRSTYWLNGKRATR 124

Query: 114 DELNKHLRISWLVPSMDRI---------FSGLSMERRRFLDRM----------------- 147
            E+   L  + + P    +              +ERR  +D +                 
Sbjct: 125 SEIIDLLSAAMISPEGYNLVLQGDITKFIKMSPIERRLIIDEISGIAEYDAKKEKALKEL 184

Query: 148 ------VFAIDPRHRRRMIDFERLMRGRNRLLT----EGYFDSSWCSSIEAQMAELGVKI 197
                 +  +D   R      ++L + RN  L     +   + +  + + A++  L   I
Sbjct: 185 KQTEENLARVDLLIREVKAQLDKLEKERNDALRYLDLKEKLEKARVTLLLAEIKRLEKFI 244

Query: 198 NI--ARVEMIN--------ALSSLIMEYVQKE-NFPHIKLSLT-----GFLDGKFDQSFC 241
               +R E I          L  +  E V KE     I+  L      G L+     S  
Sbjct: 245 EEGGSREEEIEGQIKSLEDRLKEIAKEIVAKEKELAEIERQLEEKSGDGILEITRKISEV 304

Query: 242 ALKEEYAKKLFDGRKMDSMS 261
             K E AK+  +  + +   
Sbjct: 305 KSKIEVAKRNIENAQKEIEE 324



 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 62/173 (35%), Gaps = 17/173 (9%)

Query: 183  CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               +  +  E    +    +E+ +    ++ E   KE+       + G     F Q+  A
Sbjct: 968  LEPVNMKAIEDFEVVERRYLELSSKREQVLAE---KESIEEFIQEIEGQKRQVFLQTLNA 1024

Query: 243  LKEEYAKKLFDGRKMDSMSRRTLIGP-----HRSDLIVDYCDKAITIAHG-STGEQKVVL 296
            + + +++ LF        ++  L  P        ++      K +      S GE+ ++ 
Sbjct: 1025 IAKNFSE-LFAKLSPGGEAKLILENPEDPFSGGLEIEAKPAGKDVKRIEAMSGGEKAIIA 1083

Query: 297  VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
            +    A           AP  LLDEI AHLD+     +  ++ +    SQ  +
Sbjct: 1084 LAFVFA-----IQRYKPAPFYLLDEIDAHLDDANVKRVADLIKEASQNSQFIV 1131


>gi|69244722|ref|ZP_00602986.1| DNA repair protein RecN [Enterococcus faecium DO]
 gi|258615764|ref|ZP_05713534.1| DNA repair protein RecN [Enterococcus faecium DO]
 gi|289565420|ref|ZP_06445869.1| DNA repair protein RecN [Enterococcus faecium D344SRF]
 gi|293553176|ref|ZP_06673813.1| DNA repair protein RecN [Enterococcus faecium E1039]
 gi|293560483|ref|ZP_06676975.1| DNA repair protein RecN [Enterococcus faecium E1162]
 gi|294614720|ref|ZP_06694622.1| DNA repair protein RecN [Enterococcus faecium E1636]
 gi|294618982|ref|ZP_06698477.1| DNA repair protein RecN [Enterococcus faecium E1679]
 gi|294621594|ref|ZP_06700759.1| DNA repair protein RecN [Enterococcus faecium U0317]
 gi|314937880|ref|ZP_07845196.1| DNA repair protein RecN [Enterococcus faecium TX0133a04]
 gi|314941371|ref|ZP_07848264.1| DNA repair protein RecN [Enterococcus faecium TX0133C]
 gi|314950130|ref|ZP_07853416.1| DNA repair protein RecN [Enterococcus faecium TX0082]
 gi|314951329|ref|ZP_07854383.1| DNA repair protein RecN [Enterococcus faecium TX0133A]
 gi|314992840|ref|ZP_07858241.1| DNA repair protein RecN [Enterococcus faecium TX0133B]
 gi|68196313|gb|EAN10742.1| DNA repair protein RecN [Enterococcus faecium DO]
 gi|289162749|gb|EFD10600.1| DNA repair protein RecN [Enterococcus faecium D344SRF]
 gi|291592458|gb|EFF24065.1| DNA repair protein RecN [Enterococcus faecium E1636]
 gi|291594643|gb|EFF26025.1| DNA repair protein RecN [Enterococcus faecium E1679]
 gi|291598759|gb|EFF29811.1| DNA repair protein RecN [Enterococcus faecium U0317]
 gi|291602586|gb|EFF32801.1| DNA repair protein RecN [Enterococcus faecium E1039]
 gi|291605631|gb|EFF35073.1| DNA repair protein RecN [Enterococcus faecium E1162]
 gi|313592644|gb|EFR71489.1| DNA repair protein RecN [Enterococcus faecium TX0133B]
 gi|313596546|gb|EFR75391.1| DNA repair protein RecN [Enterococcus faecium TX0133A]
 gi|313599794|gb|EFR78637.1| DNA repair protein RecN [Enterococcus faecium TX0133C]
 gi|313642738|gb|EFS07318.1| DNA repair protein RecN [Enterococcus faecium TX0133a04]
 gi|313643571|gb|EFS08151.1| DNA repair protein RecN [Enterococcus faecium TX0082]
          Length = 560

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56

Query: 67  IGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            G+          +   EG +++ ++L    D     ++ +
Sbjct: 57  QGAEKCVLEGLFELPKQEGFSELMVELGIETDEDNLIVRRD 97


>gi|331701484|ref|YP_004398443.1| chromosome segregation protein SMC [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128827|gb|AEB73380.1| chromosome segregation protein SMC [Lactobacillus buchneri NRRL
           B-30929]
          Length = 1183

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++K + I  F+++A   L  F    T  VG NG GK+NI E+I ++      +  R + 
Sbjct: 1   MQLKSIEIIGFKSFADKTLIKFPGGMTGIVGPNGSGKSNIAESIRWVMGEQSAKNLRGSR 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             DV   GS    S   A V      +D  IK    + +  R L  N 
Sbjct: 61  MPDVIFSGSADRRSLGMASVTLTLDNSDHFIKSPFDELKLSRKLFRNG 108


>gi|317049194|ref|YP_004116842.1| DNA repair protein RecN [Pantoea sp. At-9b]
 gi|316950811|gb|ADU70286.1| DNA repair protein RecN [Pantoea sp. At-9b]
          Length = 553

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 66/207 (31%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHRGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              PS        +  +G   +  ++ + D RS   +    V +  
Sbjct: 57  QGASRADICARFQLKASPSAQRWLTENQLDDGNECLLRRVISADGRSRGFINGTSVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           + EL + L       +   +       ++  LD      D       H +R     R + 
Sbjct: 117 LRELGQLLIQIHGQHAHQLLLK--PDHQKHLLDAYAAHDDVLAQMRIHYQRWHQSCRALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
              +L  E             ++ E  
Sbjct: 175 QHQQLSQEREARRELLQYQLKELNEFA 201


>gi|222086433|ref|YP_002544967.1| DNA repair protein RecN [Agrobacterium radiobacter K84]
 gi|221723881|gb|ACM27037.1| DNA repair protein RecN [Agrobacterium radiobacter K84]
          Length = 557

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 98/299 (32%), Gaps = 43/299 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F+   ++  G+ G GK+ +L+++S    GRG       D+ R
Sbjct: 2   LIQLSIRDIVLIERLDLAFETGLSVLTGETGAGKSILLDSLSLALGGRG-----DGDLVR 56

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G      T               R  G++   D+  +     D   +    +  +   +
Sbjct: 57  HGEERGQVTAVFDVGMQHAARKLLRENGIDDDGDLIFRRTQSADGRTKAFVNDQPLSVQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMRG 168
                 L +       DR         R  LD             R  +   D ER +R 
Sbjct: 117 MRQAGQLLVEIHGQHDDRALVDTDA-HRMLLDAFAGIAEDVQGVGRLYKVWRDTERTLRK 175

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMI--NALSSLIMEYVQ--- 217
           +   +     ++ +  +   ++ +L        ++   R  M+    ++  I E  +   
Sbjct: 176 QREQVENAAREADYIRAAVEELEKLSPQDGEEDELAKKRSRMMKAERIAGDIAEASEFLN 235

Query: 218 --KENFPHI-----KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR-KMDSMSRRTLIGP 268
                 PHI     +L           +   AL +    +L + + ++++  R+T   P
Sbjct: 236 GNASPVPHIASLVRRLERKSHEAPGLLEDTVALLDAALDQLSNAQMEVEAALRKTEYDP 294


>gi|115384434|ref|XP_001208764.1| chromosome segregation protein sudA [Aspergillus terreus NIH2624]
 gi|114196456|gb|EAU38156.1| chromosome segregation protein sudA [Aspergillus terreus NIH2624]
          Length = 1199

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 77/260 (29%), Gaps = 27/260 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + +K + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRSVRCLQINDVVIRVVD 114
                          A VE +   +D         + L            ++       D
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSDDRFPTGKPEVVLRRTIGLKKDEYTLDRKNATKSD 120

Query: 115 ELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            +N      +   +   I               ER   L  +       +  R  +  ++
Sbjct: 121 VMNLLESAGFSRSNPYYIVPQGRVTALTNMKDSERLNLLKEVAGT--QVYEARRAESLKI 178

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           M   N        D      I  ++AEL  + +  R           +EY     +   +
Sbjct: 179 MHETNN--KRAKIDE-LLDFINERLAELEEEKDELRNYQEKDKERRCLEYTI---YSREQ 232

Query: 226 LSLTGFLDGKFDQSFCALKE 245
             ++  LD   +Q    +++
Sbjct: 233 QEISSILDSLEEQRQTGVED 252



 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 97/298 (32%), Gaps = 22/298 (7%)

Query: 61   YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
               + +  + +        E    + +++  +E    R  + +Q    + +   E   ++
Sbjct: 874  DESIEQANTQAAELAQRNAETRREMEELAKSIEKHQRRMEKSMQKKAALTKQAAECAANI 933

Query: 121  RISWLVPSMDRIFSGLSM-----ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
            R   ++P         +      ++   ++  +      +++    +    + R  L + 
Sbjct: 934  RDLGVLPDEAFTKYKNTDSNAVVKKLHKVNEGLKKYSHVNKKAFEQYNSFTKQRETLTSR 993

Query: 176  GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
                 +   SI+     L   ++  + E I      +        F  +  +  G L  +
Sbjct: 994  REELDASQKSIDD----LINVLDQRKDEAIERTFKQVSREFANV-FEKLVPAGRGRLIIQ 1048

Query: 236  FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
                  AL+++   +  D     S+     +G   S       D+   I   S G++ + 
Sbjct: 1049 RKTD-RALRQDDELESEDEEARQSVENYVGVGISVS--FNSKHDEQQRIQQLSGGQKSLC 1105

Query: 296  LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTG 349
             + +  A           AP  L DEI A+LD   R A+ +++  I      Q   T 
Sbjct: 1106 ALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQMLKSISDSTNGQFICTT 1158


>gi|27227809|emb|CAD59413.1| SMC6 protein [Oryza sativa]
          Length = 1040

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 88/266 (33%), Gaps = 27/266 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA--ISFLSPGRG-FRRASYAD 63
           I  + +  F  ++SL +          G NG GK+ +L A  I+F S  +   R A+  D
Sbjct: 5   ISRIRLENFMCHSSLHIELGQHVNFITGQNGSGKSAVLTALCIAFGSRAKSTQRAAALKD 64

Query: 64  VTRIGSPSFFSTFARVEGMEGLADIS-----IKLETRDDRS-----VRCLQINDVVIRVV 113
             + G              E           ++LE R   S     ++    N V  R  
Sbjct: 65  FIKTGCSYAAIIVDINNQGEDAFKPEVYGDLVRLERRITESSSSMFLKDQHGNKVAHRKD 124

Query: 114 D--ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
           D  E+ +H  I    P           + R FL       + + + +      L++  N 
Sbjct: 125 DLIEIIEHFNIDVENPC----VIMSQDKSREFLHSG----NNKDKFKFFFKATLLQHVND 176

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL           + ++ + EL   I  A +E ++ L   I      E   H   +L   
Sbjct: 177 LLLAIR---ELLDNADSVVQELEKSIKPAMME-LDELQQKIKNMEHIEEIAHEIDNLKKK 232

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM 257
           L   +        EE   KL   ++ 
Sbjct: 233 LAWSWVYDVDRQIEEQTVKLLKLKER 258


>gi|11498612|ref|NP_069840.1| hypothetical protein AF1007 [Archaeoglobus fulgidus DSM 4304]
 gi|2649590|gb|AAB90237.1| predicted coding region AF_1007 [Archaeoglobus fulgidus DSM 4304]
          Length = 284

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-----RGF 56
          IK L I  +R+   L +         +G N  GKTNIL A+  +        R F
Sbjct: 2  IKKLIIKNYRSIERLDVELS-MLNALIGPNSSGKTNILRALDLIVGTTYPSVRSF 55


>gi|322376514|ref|ZP_08051007.1| DNA repair protein RecN [Streptococcus sp. M334]
 gi|321282321|gb|EFX59328.1| DNA repair protein RecN [Streptococcus sp. M334]
          Length = 555

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 23/211 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G+E   +I I+ E          ++N  ++ + 
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFNEQGLEMGDEIIIRREI-LQNGRSISRVNGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+               F D     +   ++     + ++ +  
Sbjct: 116 VLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDTAFCTLKETYQTSFDAYRKMRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
             +        +    +E QMAE+      A
Sbjct: 176 LEVKKNQQEHKARIEMLEFQMAEIEAANLQA 206


>gi|294673766|ref|YP_003574382.1| hypothetical protein PRU_1052 [Prevotella ruminicola 23]
 gi|294473447|gb|ADE82836.1| conserved hypothetical protein [Prevotella ruminicola 23]
          Length = 719

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          + +K L I  FR+Y     R  F+    T+ +GDNG GKT   EA+ +L    G R
Sbjct: 1  MILKELEIRNFRSYYGNENRFEFNPTGLTLIIGDNGDGKTTFFEALEWLFDTTGLR 56


>gi|283769400|ref|ZP_06342299.1| chromosome segregation protein SMC [Bulleidia extructa W1219]
 gi|283104057|gb|EFC05441.1| chromosome segregation protein SMC [Bulleidia extructa W1219]
          Length = 977

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 96/279 (34%), Gaps = 58/279 (20%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A    + F+   T  VG NG GK+NI +AI   L     +  R   
Sbjct: 1   MFLKRVEMQGFKSFADKTVIEFNHPITGIVGPNGCGKSNITDAIRWVLGEQSAKSMRGDK 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   GS +            F ++   +   EG  +++ +L      +     IN  
Sbjct: 61  MNDVIFAGSANRRKVNLAEVTLVFDNSDHILNQQEGEVEVTRRLYRESGEANYL--INHR 118

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRR 157
            +R + ++      + L      I S            +ERR   +    V     R   
Sbjct: 119 PVR-LKDIVDLFLDTGLGKDSLSIISQGNVLSFAESKPIERRSIFEEAAGVAKYKKRKLE 177

Query: 158 RMIDFERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
            +   ER    +   NRL+          S +E Q++ L       R      L     +
Sbjct: 178 TLSRLERSEQNLEQ-NRLV---------LSELEKQVSPL------KRQAKKAELYREKKQ 221

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
            +QK     +  S+         QS     E   ++LF+
Sbjct: 222 RLQKIEISVLVNSI---------QSLYEDLEALDQQLFE 251


>gi|221118117|ref|XP_002164499.1| PREDICTED: similar to structural maintenance of chromosomes 2-like
           1 [Hydra magnipapillata]
          Length = 261

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 20/145 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + IK + +  F++YA    +  FD       G NG GK+NIL++I FL         R  
Sbjct: 1   MYIKNIVLDGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGITNLTHVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          V            G E   +I+I  +       + L IN 
Sbjct: 61  NLQDLIYKSGQAGVSKATVTVTFDNKDKDQSPVGYEAFDEITISRQIVLGGRNKYL-ING 119

Query: 108 VVIRVVD--ELNKHLRISWLVPSMD 130
                    +L + ++++   P   
Sbjct: 120 SNAHNARVQDLFRSVQLNINNPHFL 144


>gi|220904486|ref|YP_002479798.1| SMC domain-containing protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868785|gb|ACL49120.1| SMC domain protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 531

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 87/270 (32%), Gaps = 29/270 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L +        + L F+    +  G+ G GK+ IL+A+ FL   +      
Sbjct: 1   MLEYLRIRNLAL-----IEDMELEFEPGMNVLTGETGAGKSFILKALGFLLGDK-----L 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLA--DISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            AD+ R G+       A+VE +  L   DI ++ E   +     L IND  +R  D L  
Sbjct: 51  SADMVRGGAER-----AQVEALFTLKDDDIVLRRELLAETGRSRLYINDE-LRSQDSLRD 104

Query: 119 H-LRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRNRLLTE 175
              R+        +        + R L+  +    +  +    +         R  LL  
Sbjct: 105 LRPRLVAHTSQHAQQKLLQPAVQARLLESGLEQPELLAKRDALLSRLTEAAAQRKALLER 164

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT---GFL 232
               +     +E Q      +              L     Q  +   ++ +       L
Sbjct: 165 QAGLAEKRELLEMQ-----QQEIDKVEPEDGEEEQLEEVRAQARSLESVRENYEQALSLL 219

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            G   +    L   + K L    K D   +
Sbjct: 220 HGNETEGLLDLLGNFEKVLTRMAKEDESLK 249


>gi|170025363|ref|YP_001721868.1| SMC (structural maintenance of chromosomes) family protein
          [Yersinia pseudotuberculosis YPIII]
 gi|169751897|gb|ACA69415.1| SMC (structural maintenance of chromosomes) family protein
          [Yersinia pseudotuberculosis YPIII]
          Length = 682

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 17/93 (18%)

Query: 5  IKIKFLNISEFRNY------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          + +K ++   +R +       +L    +    I VG+N  GKT I++AI  +     +  
Sbjct: 1  MYLKHISARNYRAFGDSTSTPALDWELNPGLNILVGENDAGKTCIVDAIRQVLLTTSY-- 58

Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADISIK 91
              +  R+    F      + G      + I+
Sbjct: 59 ----ENIRLFEQDF-----HIHGAIRSNTLCIE 82


>gi|71898353|ref|ZP_00680526.1| DNA repair protein RecN [Xylella fastidiosa Ann-1]
 gi|71731876|gb|EAO33934.1| DNA repair protein RecN [Xylella fastidiosa Ann-1]
          Length = 557

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 93/278 (33%), Gaps = 38/278 (13%)

Query: 7   IKFLNISEF---RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++ L I +F   RN     L F    T+  G+ G GK+ I++A+SFLS  R     + + 
Sbjct: 2   LRHLTIKDFAVVRNIE---LEFGPGMTVVSGETGAGKSLIIDALSFLSGLR-----ADSS 53

Query: 64  VTRIGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           V R G+                   + R   ++      ++   R D   R   IN   +
Sbjct: 54  VVRHGAERAELSAEFDITIHHPARVWLRNVELDDGDQCQLRRIIRADGGSRA-WINARPV 112

Query: 111 --RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID----FER 164
               + +L  HL           + S  S    + +    +A +   R  +      ++ 
Sbjct: 113 TLSQLSDLATHLVEIHGQHEHQTLLSRQS----QLVLLDAYAQNETERDAVQQAATHWQA 168

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L+  R+ L  +G       + IE Q+ EL  +        I AL +              
Sbjct: 169 LLDERDALQAQGDMSER-INFIEHQLIEL--QRENLDPATITALDASHRRQAHTAALIEA 225

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
             + T  L+G    S   L       L    + D+   
Sbjct: 226 CKNTTQRLNGDDTTSALHLLHAARHTLSRVTEHDARLG 263


>gi|198452495|ref|XP_001358804.2| GA19328 [Drosophila pseudoobscura pseudoobscura]
 gi|198131954|gb|EAL27947.2| GA19328 [Drosophila pseudoobscura pseudoobscura]
          Length = 1238

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++ + +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LESIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVARSCYVTAKFILNE-EKHMDFQRAVISGSSEYRINGESVSSSTYLNKL 144


>gi|153938947|ref|YP_001391199.1| DNA repair protein recN [Clostridium botulinum F str. Langeland]
 gi|152934843|gb|ABS40341.1| DNA repair protein RecN [Clostridium botulinum F str. Langeland]
          Length = 567

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  F     L + FD    +  G+ G GK+ +++AIS++  G+ F      D+ R
Sbjct: 2  LLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGK-F----NRDLIR 56

Query: 67 IGSP-SFFSTFARVEGMEGLA 86
           G   ++      +E      
Sbjct: 57 TGENKTYVEAIFSIENESTER 77


>gi|319942917|ref|ZP_08017200.1| ATPase [Lautropia mirabilis ATCC 51599]
 gi|319743459|gb|EFV95863.1| ATPase [Lautropia mirabilis ATCC 51599]
          Length = 390

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ + I  +R +    L    +    VG NG GK+ + +  SFL             V
Sbjct: 1  MQIESIKIQNYRTFRHAHLDGLPRLVTLVGANGTGKSTLFDVFSFLKDALAHNVGKA--V 58

Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98
           R GS        R     G   I IK      R
Sbjct: 59 ARRGS----MRELRSRDQRGPIRIEIKFRESGGR 88


>gi|314998044|ref|ZP_07862932.1| DNA repair protein RecN [Enterococcus faecium TX0133a01]
 gi|313587886|gb|EFR66731.1| DNA repair protein RecN [Enterococcus faecium TX0133a01]
          Length = 562

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I+ F     LRL F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQEISITNFAIIPELRLSFHEGMTALTGETGAGKSIIIDALGLLAGGRG-----SSDYIR 56

Query: 67  IGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            G+          +   EG +++ ++L    D     ++ +
Sbjct: 57  QGAEKCVLEGLFELPKQEGFSELMVELGIETDEDNLIVRRD 97


>gi|295425202|ref|ZP_06817905.1| cell division protein Smc [Lactobacillus amylolyticus DSM 11664]
 gi|295064978|gb|EFG55883.1| cell division protein Smc [Lactobacillus amylolyticus DSM 11664]
          Length = 1188

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +  L I  F+++A    + F +  T  VG NG GK+NI EAI +    S  +  R  +
Sbjct: 1  MPLTELVIDGFKSFAEKTTIHFGSGITGIVGPNGSGKSNITEAIRWAMGESRAKTLRGDN 60

Query: 61 YADVTRIGSP 70
            DV   GS 
Sbjct: 61 MKDVIFAGSE 70


>gi|295693198|ref|YP_003601808.1| DNA repair protein recn [Lactobacillus crispatus ST1]
 gi|295031304|emb|CBL50783.1| DNA repair protein RecN [Lactobacillus crispatus ST1]
          Length = 560

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 91/259 (35%), Gaps = 55/259 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG       ++ R
Sbjct: 2   LVELDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRG-----QKEMIR 56

Query: 67  IGSPSFFST-----------FARVEGMEGLADISIKLETRDD---RSVRCLQINDV--VI 110
            G      T            A +    GL     +L    +   +    ++IN     I
Sbjct: 57  SGESKAIITGLFELDDQKEKIAELCDQYGLPHDDDQLVISRELAVKGRNVVRINGQLTTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+  +L +        +I     M++ R +D +        +  +  ++       
Sbjct: 117 NVLREIGSYL-VDIHGQHDQQIL----MDQDRQIDLVDNYAPASFKADLATYQ------- 164

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                   D +    + +Q+                 L     E  QK++    + +   
Sbjct: 165 -------TDYAQWQKLTSQL---------------RHLRQDAQELAQKQDILQFQNNELE 202

Query: 231 FLDGKFDQSFCALKEEYAK 249
             D +  Q    L+EEY +
Sbjct: 203 AADLEDPQEDEKLEEEYNE 221


>gi|256027930|ref|ZP_05441764.1| SMC domain-containing protein [Fusobacterium sp. D11]
 gi|289765877|ref|ZP_06525255.1| conserved hypothetical protein [Fusobacterium sp. D11]
 gi|289717432|gb|EFD81444.1| conserved hypothetical protein [Fusobacterium sp. D11]
          Length = 325

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 70/363 (19%), Positives = 120/363 (33%), Gaps = 63/363 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY----- 61
           IK + I  FRN+ ++      +  + +G N VGKTN+L AI  +   + FR         
Sbjct: 6   IKKIEIKNFRNFENISFQTREK-NVIIGMNDVGKTNLLYAIKLVFSYK-FRNIDLLDSDF 63

Query: 62  -ADVTRIGSPSFFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNK 118
                      F S     +  E  +D +  I  E  + R+    + N + I++V E   
Sbjct: 64  HKQNISKPFEIFISMQIFDKEKEEKSDFTEIILSEIGNLRNKENGEQNLLNIKLVGEYQN 123

Query: 119 HLRISWLVPS------MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
            + + W V        MD I +  + + R      +F I P        +          
Sbjct: 124 GISMFWNVSEKMTKDDMDEIPAVGASKNRIDSIFEIFDIPP--------YN--------- 166

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                        IE +  E+  KI           +  I E  +++      L  T   
Sbjct: 167 ------------DIEKKFLEISRKIVN---------NMEISETEKEKYTEIENLQNTLKE 205

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR--SDLIVDYCDKAITIAH--GS 288
           + +   S   + EE    L        +   T +G  R   DL +          +    
Sbjct: 206 NIEELDSVKKIDEEITNSLKKFNVSYEIKVATTLGLKRIYDDLKIFTKQDNEDRIYPTAG 265

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIF 346
            G +K +   ++L             PI+LL+E   HL    + +L      +D    IF
Sbjct: 266 DGRKKTIQYAMYLYEIE---QQHKKIPIILLEEPENHLFLRNQISLSNTFFNSDFFCNIF 322

Query: 347 MTG 349
           ++ 
Sbjct: 323 LST 325


>gi|170755097|ref|YP_001781428.1| DNA repair protein recN [Clostridium botulinum B1 str. Okra]
 gi|169120309|gb|ACA44145.1| DNA repair protein RecN [Clostridium botulinum B1 str. Okra]
          Length = 567

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  F     L + FD    +  G+ G GK+ +++AIS++  G+ F      D+ R
Sbjct: 2  LLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGK-F----NRDLIR 56

Query: 67 IGSP-SFFSTFARVEGMEGLA 86
           G   ++      +E      
Sbjct: 57 TGENKTYVEAIFSIENESTER 77


>gi|170108569|ref|XP_001885493.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639655|gb|EDR03925.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1183

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 64/198 (32%), Gaps = 29/198 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+++ + +F  +  L   F  Q    +G NG GK+  L A++    G+     R      
Sbjct: 137 IEYIEMHQFMCHKYLTFHFGPQINFIIGHNGSGKSAALSALTVALGGKANSTGRGNGIKS 196

Query: 64  VTRIGSP-SFFSTFARVEGME--------GLADISIKLETRDDRSVRCLQINDVVIRV-- 112
             R G   S  +   + +G E            I+ +       S +    +  VI    
Sbjct: 197 FIREGQSVSEVTVHLKNQGEEAFKPSEYGKTIVITRRFTKEGGSSWKIKSKDGKVISTKK 256

Query: 113 --VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRH---RR 157
             +  +  H+ I    P        +   + +    ++ +F      +  +   +     
Sbjct: 257 EELAAICDHMNIQVDNPMNVLTQDSARQFLSASHPQDKYKFFLRGTQLSQLSDEYDTCLE 316

Query: 158 RMIDFERLMRGRNRLLTE 175
            +    +++  +   L +
Sbjct: 317 NITQTAKVLAQKKEALPD 334


>gi|328542975|ref|YP_004303084.1| dna repair protein [polymorphum gilvum SL003B-26A1]
 gi|326412721|gb|ADZ69784.1| Probable dna repair protein [Polymorphum gilvum SL003B-26A1]
          Length = 556

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 74/240 (30%), Gaps = 30/240 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L + F A  T+  G+ G GK+ +L+A++    GRG      A + R
Sbjct: 2   LASLSIRDIVLIDRLDIDFAAGMTVLTGETGAGKSILLDALTLALGGRG-----DAGLVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G                     ++     DD  V   +I     R    LN       L
Sbjct: 57  HGEAQGQVVAVFDVATGHPVRALLRANDVPDDGDVILRRIQTADGRTRAFLNDQPVSVGL 116

Query: 126 ---VPSMDRIFSG--------LSMERRRFLD-----RMVFAIDPRHRRRMIDFERLMRGR 169
                 M     G             R  LD       + A        +   ER +R  
Sbjct: 117 LRQAGQMLVEVHGQHDERALVDPESHRLLLDAFGGLDGLAATVADAHGGLRAAERAVREH 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEM--INALSSLIMEYVQKENF 221
              +     ++ +  +   ++A L        ++   R  M  +  +++ + E  +  N 
Sbjct: 177 RARIEAARREADFLRAAVDELATLDPQAGEEEELAARRTRMMQVEKIAADLSEAYETLNG 236


>gi|300854306|ref|YP_003779290.1| putative DNA repair protein RecN [Clostridium ljungdahlii DSM
           13528]
 gi|300434421|gb|ADK14188.1| predicted DNA repair protein RecN [Clostridium ljungdahlii DSM
           13528]
          Length = 565

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 18/130 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI  F     L + F++   +F G+ G GK+ +++AI+++  G+ F      ++ R
Sbjct: 2   LLQLNIKNFALIEKLTISFESGFNVFSGETGAGKSILIDAINYVLGGK-F----NKNLIR 56

Query: 67  IGSP-SFFSTFARVEG-----------MEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
            G   +F      +E            M+   D+ I             +IN   I ++ 
Sbjct: 57  TGENKTFVEAVFTIENPKTFEILEEKDMKSEEDLVIISRESFQSGRTVAKINGKSI-LLS 115

Query: 115 ELNKHLRISW 124
           +L        
Sbjct: 116 DLRDISSTLL 125


>gi|227540141|ref|ZP_03970190.1| Smc family chromosome segregation protein [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227240002|gb|EEI90017.1| Smc family chromosome segregation protein [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 1180

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 54/313 (17%), Positives = 109/313 (34%), Gaps = 45/313 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++  L I  F+++   + + F+   T  VG NG GK+N+++AI ++      R  R   
Sbjct: 1   MQLTKLEIKGFKSFGDKITINFNDGVTAIVGPNGCGKSNVVDAIRWVMGEQSTRALRSEK 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCL--------QINDVVIR 111
             ++   G+ +   +  A V          +  E       R L        ++NDV  R
Sbjct: 61  MENIIFNGTKNRKPANLAEVSLTFNNTKNILPTEFSTVNITRKLYRNGESEYRLNDVKCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L         +  +D I +     RR   +             +  ++
Sbjct: 121 LKDITDLFLDTGLGADTYSIIELKMIDEIINNKDNSRRNLFEE---------ASGISKYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
              +     L E   D    S ++  + E+G  +     + +   +    +Y + K+ + 
Sbjct: 172 VRKKQTLSKLKETEND---LSRVDDLLFEIGKNL-----KSLENQAKKADKYFRLKDEYK 223

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
              +SL  F    F Q    L+E+        ++      ++ IG   ++L     D   
Sbjct: 224 DASVSLAYFKLADFSQDLEKLEEQ-----EAAQQEVIQQNQSQIGLQETELQEKKKDILA 278

Query: 283 TIAHGSTGEQKVV 295
              + S  +QK  
Sbjct: 279 KEKNLSV-QQKST 290


>gi|239616597|ref|YP_002939919.1| chromosome segregation protein SMC [Kosmotoga olearia TBF 19.5.1]
 gi|239505428|gb|ACR78915.1| chromosome segregation protein SMC [Kosmotoga olearia TBF 19.5.1]
          Length = 1173

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           +++  + I  F+++A   ++      T  VG NG GK+NI++AI ++   +  +      
Sbjct: 1   MRLVSIFIKGFKSFAYPTKIDISKGITAIVGPNGSGKSNIVDAIRWVFGEQSMKTIRADN 60

Query: 63  --DVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             DV   GS       S   ++   +    I+I  E   D  +    IND   R+ D
Sbjct: 61  REDVIFAGSEKNPPANSAVVKLTFEDERGLITIGREITRD-GLSQYSINDKPSRLRD 116


>gi|156838994|ref|XP_001643193.1| hypothetical protein Kpol_1011p5 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113792|gb|EDO15335.1| hypothetical protein Kpol_1011p5 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1221

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 15/121 (12%)

Query: 6   KIKFLNISEFRNYASL-RLVF-DAQHTIFVGDNGVGKTNILEAISF-LSPGRGF-RRASY 61
           ++  L ++ F++Y  +  + F ++  T  +G NG GK+N+++AISF L       R    
Sbjct: 3   RLLGLELNNFKSYKGVVNVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVQSSHLRSNVL 62

Query: 62  ADVTRIG----------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVI 110
            D+   G          +       A V+      D++ +L      S     +IN+  +
Sbjct: 63  KDLIYRGFLSGDDEDNNNEDVNPNSAYVKAFYQKEDVTHELMRSISNSGDSTYKINNKTV 122

Query: 111 R 111
            
Sbjct: 123 S 123


>gi|147833306|emb|CAN68529.1| hypothetical protein VITISV_032933 [Vitis vinifera]
          Length = 1137

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA+  +V  FD       G NG GK+NIL++I F   ++  +  R +
Sbjct: 1   MYIKEICLEGFKSYATRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          V            G +   +I++  +       + L IN 
Sbjct: 61  NLQELVYKQGQAGITKATVSVVFDNSDRSRSPLGYQDCPEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            + +     N    +   V +   +    
Sbjct: 120 HLAQPSRVQNLFHSVQLNVNNPHFLIMQG 148


>gi|17532089|ref|NP_494935.1| hypothetical protein C27A2.1 [Caenorhabditis elegans]
 gi|13592365|gb|AAK31464.1| Smc (structural maintenance of chromosomes) family protein 5,
           confirmed by transcript evidence [Caenorhabditis
           elegans]
          Length = 1076

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGF-RRASYAD 63
           +  +    F  Y     +  A   + +G NG GK++I+  I     G  +   R     +
Sbjct: 22  LLRVVFHNFLTYEHTSFLPTASLNMILGHNGSGKSSIICGICLACGGSPKSLGRSERIVE 81

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--IRVVDELNKHLR 121
             R G    +   A  +  +G   + + +   +    R   +ND       + +L KH  
Sbjct: 82  YIRHGCTEGYVEIAIADKQKGPQVVRLTIRVGEQPKYR---LNDSATTQSEIADLRKHYN 138

Query: 122 ISWLVP 127
           I    P
Sbjct: 139 IQIDNP 144


>gi|170758542|ref|YP_001787205.1| DNA repair protein recN [Clostridium botulinum A3 str. Loch
          Maree]
 gi|169405531|gb|ACA53942.1| DNA repair protein RecN [Clostridium botulinum A3 str. Loch
          Maree]
          Length = 567

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  F     L + FD    +  G+ G GK+ +++AIS++  G+ F      D+ R
Sbjct: 2  LLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGK-F----NRDLIR 56

Query: 67 IGSP-SFFSTFARVEGMEGLA 86
           G   ++      +E      
Sbjct: 57 TGENKTYVEAIFSIENESTER 77


>gi|168184563|ref|ZP_02619227.1| DNA repair protein RecN [Clostridium botulinum Bf]
 gi|237795292|ref|YP_002862844.1| DNA repair protein recN [Clostridium botulinum Ba4 str. 657]
 gi|182672343|gb|EDT84304.1| DNA repair protein RecN [Clostridium botulinum Bf]
 gi|229262758|gb|ACQ53791.1| DNA repair protein recN [Clostridium botulinum Ba4 str. 657]
          Length = 567

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  F     L + FD    +  G+ G GK+ +++AIS++  G+ F      D+ R
Sbjct: 2  LLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGK-F----NRDLIR 56

Query: 67 IGSP-SFFSTFARVEGMEGLA 86
           G   ++      +E      
Sbjct: 57 TGENKTYVEAIFSIENESTER 77


>gi|159897075|ref|YP_001543322.1| ATP-dependent OLD family endonuclease [Herpetosiphon aurantiacus
          ATCC 23779]
 gi|159890114|gb|ABX03194.1| ATP-dependent endonuclease of the OLD family-like [Herpetosiphon
          aurantiacus ATCC 23779]
          Length = 708

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 22/43 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI  + I  FR+    +L       + +G N  GK+NIL AI
Sbjct: 1  MKITDVIIKNFRSIEHAQLNGCGDINVLIGKNNAGKSNILLAI 43


>gi|27262512|gb|AAN87537.1| DNA repair protein RecN [Heliobacillus mobilis]
          Length = 562

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 10/83 (12%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L +  F       L       +  G+ G GK+ I++A+  L  GR        DV R
Sbjct: 2  LERLRVENFALIEEAELELSPGMNLLTGETGAGKSLIIDAVGLLIGGRSM-----PDVVR 56

Query: 67 IGSPSFFSTFARVEGMEGLADIS 89
           G+       AR+EG+  + +  
Sbjct: 57 SGAEK-----ARIEGLFRIDERE 74


>gi|326335069|ref|ZP_08201269.1| ATPase [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325692874|gb|EGD34813.1| ATPase [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 350

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/386 (15%), Positives = 134/386 (34%), Gaps = 59/386 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ------HTIFVGDNGVGKTNILEAISFLS--PGRGF 56
           +KIK + +  ++ +   + +F  +       T+ VG+NG GK+++L+AI  +     R  
Sbjct: 1   MKIKEITLRNYKRFVEQKTIFFHKDGEINDMTLIVGNNGTGKSSLLQAIVMMIAPLTRDH 60

Query: 57  RRASYAD-------VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
                 D         + G          ++  E   + ++    R  +    L      
Sbjct: 61  FSVEDIDWSGFEYRFIQSGGRMPLKVEVTIDFSEEELNETVLYAERLKKMGNKL------ 114

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                +L        +            + R +    +      ++ +++  FE     +
Sbjct: 115 -----DLPNKNETVNIFFDY---KKKKPIVRGKGGGNLFQFFGHQYAKQLTSFE---IDK 163

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
           N+L  E   +  W +  E + +     +    V  ++A+ S +          HI L   
Sbjct: 164 NKLF-EKVGNIYWYT--EQRTSYSVNNMFEGDVSQLDAIRSFLANAYSF----HIALEKG 216

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGR------KMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
             L       +  + E Y+K   D +      + D   + T       D  ++       
Sbjct: 217 RELKAGAFDFYQKISELYSKVFTDRKFVGATPRFDIYEKSTAP-----DFFLNDGKNDYE 271

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG- 342
           ++  S GE+ +  + +  A   +         I+++DEI  HL    + A  R +  +G 
Sbjct: 272 LSEMSAGERAIFPILMDFARYNI------NNSIVIIDEIELHLHAPLQQAFIRALPKLGY 325

Query: 343 -SQIFMTGTDKSVFDSLNETAKFMRI 367
            +Q  +T T      ++ +  +F+R+
Sbjct: 326 NNQFILT-THSENVATMFDKDQFIRL 350


>gi|308161818|gb|EFO64251.1| SMC3-like protein [Giardia lamblia P15]
          Length = 1231

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 5   IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAI--SFLSPGRGFRRASY 61
           + +  + I  FR+     +        +F+G NG GK+N   AI  + + P    +  + 
Sbjct: 1   MYLSEVEIRNFRSIVHTSVTGLHPGINVFIGINGAGKSNFYSAILFALMDPLYDLKTINR 60

Query: 62  ADVTRIGSP---SFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           A +    +     +      +EG   G     + +      +     +NDV++   D++ 
Sbjct: 61  AQILSNDAKTKSGYVKLIIDLEGAAVGDFQGKVSISRHFTITTDSFYLNDVLV-TSDKVA 119

Query: 118 KHLRISWLVPSMD 130
             L I    PS  
Sbjct: 120 NFLSIMGFNPSSQ 132



 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 40/216 (18%)

Query: 161  DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
             ++R +R +++L  +         ++E  + +L V+      E    + +   E   +  
Sbjct: 1021 QYDRAVREKDQLEKQLADVVEGEHAVEDLVMKLDVRRKAHFEEQFKLVDARFSEIFHRIT 1080

Query: 221  FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
                 L+L+   DG+ D                             G         + ++
Sbjct: 1081 GGKGHLTLSTHGDGEPD-----------------------------GILVD---ATFANQ 1108

Query: 281  AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
            A      S G++ +  +   LA     +        LLLDE  A LDE  R     ++ +
Sbjct: 1109 ATKDVQMSGGQRTLTSLCFVLA-----TEQASNNSFLLLDEPDACLDEAYRTVFANLLAE 1163

Query: 341  I---GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
                G Q+F+      +    N+     R+ +H  +
Sbjct: 1164 RAAQGIQVFVITFRTEIITVANQCFAVSRVEDHTTI 1199


>gi|218708667|ref|YP_002416288.1| recombination and repair protein [Vibrio splendidus LGP32]
 gi|218321686|emb|CAV17640.1| DNA repair protein RecN [Vibrio splendidus LGP32]
          Length = 554

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR       A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRS-----DAGMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFLLENNLHATRWLEDNELLDGGECILRRTISKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+    ++         +     +  ++
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMK--SDYQMAMLDQYAGHLNLLKSTRNAYQAWRQADNHLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
               L      + +    +E Q+ EL
Sbjct: 175 E---LRENSQQNQAQKQLLEYQIKEL 197


>gi|253700396|ref|YP_003021585.1| DNA repair protein RecN [Geobacter sp. M21]
 gi|251775246|gb|ACT17827.1| DNA repair protein RecN [Geobacter sp. M21]
          Length = 553

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 67/204 (32%), Gaps = 23/204 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I+       L + F     I  G+ G GK+ I++A++ +  GR     + +D+ R
Sbjct: 2   LRELQITNLAIIEKLHVEFAPGLNILTGETGAGKSIIIDAVNLILGGR-----ASSDLIR 56

Query: 67  IGSPSFFSTFARV-------------EGMEGLADISIKLETRDDRSVRCLQINDVVIRV- 112
            G+                        G+E   ++ ++   +     R      +     
Sbjct: 57  SGAKEASVEAVFDLAGRGALLAKLSEAGVECDGELLVRRVVQQGGKNRVFIGGGLATTSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR--HRRRMIDFERLMRGRN 170
           + EL+++L   +       +    +    R LD    ++  R     R   ++       
Sbjct: 117 LAELSRNLINIYGQHDAQTLLK--TENHLRLLDGFSGSLSLREEFASRFEAYQAAKNELA 174

Query: 171 RLLTEGYFDSSWCSSIEAQMAELG 194
            L             +  Q AE+G
Sbjct: 175 ALEQGEREAERRLDLLTFQSAEIG 198


>gi|225466149|ref|XP_002269854.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1176

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++YA+  +V  FD       G NG GK+NIL++I F   ++  +  R +
Sbjct: 1   MYIKEICLEGFKSYATRTVVPGFDPYFNAITGLNGSGKSNILDSICFVLGITNLQQVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          V            G +   +I++  +       + L IN 
Sbjct: 61  NLQELVYKQGQAGITKATVSVVFDNSDRSRSPLGYQDCPEITVTRQIVVGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            + +     N    +   V +   +    
Sbjct: 120 HLAQPSRVQNLFHSVQLNVNNPHFLIMQG 148


>gi|110678163|ref|YP_681170.1| hypothetical protein RD1_0806 [Roseobacter denitrificans OCh 114]
 gi|109454279|gb|ABG30484.1| hypothetical protein RD1_0806 [Roseobacter denitrificans OCh 114]
          Length = 683

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 14/118 (11%)

Query: 5   IKIKFLNISEFRN-YASLRLVF----DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           ++I  L I  FR  Y    L F     ++ T+  G+NG GKT++L A  ++  G+     
Sbjct: 1   MRILRLKIKNFRQFYGDCELEFLSDDTSRITVIHGENGSGKTSLLNAFKWVLYGK----- 55

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           +  D    G  +  +  A  E   G   ++S++LE   + S   +       R  + L
Sbjct: 56  TDFD---TGEQTILNELALSEISPGAVTELSLELEFEHEGSTYTVHRKQEFKRTGEAL 110



 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 66/223 (29%), Gaps = 31/223 (13%)

Query: 164 RLMRGRNRLLTEGYFDSSW--------CSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
           + +  R   LT+   +              +   +A++  +I     E + + S      
Sbjct: 429 KRLEERRNELTKLQAEERLKIAKAKDAIELLNDDLAKVKKEI-----EKVQSKSQKEDLA 483

Query: 216 VQKENFPHIKLSLTGFLDGKFDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
            QK  F     SL   L     +         + + +   L      +     TL     
Sbjct: 484 RQKLEFAEACKSLVDNLHEALAEETRHHLSTKVNDTFQSILRKDFYAEIDRDYTLRI--- 540

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI--------LLLDEI 322
                        ++  STGE +V+ +    +   L                  L++D  
Sbjct: 541 --FKDVPGVGKQPVSEKSTGENQVISLSFIASLVNLAKERNKAKTTFFKGGVYPLIMDSP 598

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
              LD + R  + + + D+  Q+ +  ++      ++E  +  
Sbjct: 599 FGALDREYREKIAQHIPDLADQVIVFASNSQWSKEVDEKCRPF 641


>gi|84625992|ref|YP_453364.1| hypothetical protein XOO_4335 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84369932|dbj|BAE71090.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 398

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 10/132 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-------R 57
           ++I+ + I  FR + + +L    +  + VG NG GK+ + +  SFL             +
Sbjct: 1   MQIESIEIKNFRLFRNAKLTHVPRLCVLVGANGTGKSTLFDVFSFLKDALSMNVGKAIAK 60

Query: 58  RASYADVTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           R  Y +V   G    P  F+   R+E       ++  L+       R     +++     
Sbjct: 61  RGGYREVASRGFAHEPIEFTLQCRLEITGRERLVTYVLKIAPGTGTRVEIERELLRYKRG 120

Query: 115 ELNKHLRISWLV 126
                 R     
Sbjct: 121 SYGAPFRFLDFA 132


>gi|47228706|emb|CAG07438.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1277

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   R    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAERTSNLRVKTLKD 63

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI---------R 111
           +     +G P+    F  +   +   D  +        S    +IN+ V+          
Sbjct: 64  LIHGAPVGKPAANRAFVSMVYQQDSGD-ELAFTRVIIGSSSEYRINNKVVGLPEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156



 Score = 37.2 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 288  STGEQKVVLVGIFLA-HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE+ V  + +  A H++ + ++   AP  +LDEI A LD      +   + D   Q F
Sbjct: 1168 SGGEKTVAALALLFAIHSQFLISSYKPAPFFVLDEIDAALDNTNIGKVANYIKDQSVQNF 1227


>gi|84387681|ref|ZP_00990698.1| DNA repair protein RecN [Vibrio splendidus 12B01]
 gi|84377526|gb|EAP94392.1| DNA repair protein RecN [Vibrio splendidus 12B01]
          Length = 554

 Score = 53.8 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR       A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRS-----DAGMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFLLENNLHATRWLEDNELLDGGECILRRTISKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+    ++         +     +  ++
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMK--SDYQMAMLDQYAGHLNLLKSTRNAYQAWRQADNHLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
               L      + +    +E Q+ EL
Sbjct: 175 E---LRENSQQNQAQKQLLEYQIKEL 197


>gi|332686263|ref|YP_004456037.1| DNA repair protein RecN [Melissococcus plutonius ATCC 35311]
 gi|332370272|dbj|BAK21228.1| DNA repair protein RecN [Melissococcus plutonius ATCC 35311]
          Length = 559

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 66/174 (37%), Gaps = 22/174 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I  F   + L+L F +  T+  G+ G GK+ I++A++ L  GRG      +D  R
Sbjct: 2   LQELSIKNFAIISFLQLEFQSGMTVLTGETGAGKSIIIDAMALLVGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLETR--------DDRSVRCLQINDVVI--R 111
            G+        F     +E +  L  + I++E           +      +IN  ++   
Sbjct: 57  QGTSKCTLEGLFKMPKNLELIHLLEGLGIEIEEDSLLIQRDISNTGKNVCRINGRIVTLS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLS--MERRRFLDRMVFAIDPRHRRRMIDFE 163
            +  + ++L           +            F  + +  I  +++    ++ 
Sbjct: 117 NLRRIGEYLVDIHGQNEHQELMQSDKHIEMLDEFGGKELEQIKKQYKELYKEYR 170


>gi|328851225|gb|EGG00382.1| hypothetical protein MELLADRAFT_118060 [Melampsora larici-populina
           98AG31]
          Length = 1110

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 14/129 (10%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62
            I+ L +  F  +  L + F  Q    +G+NG GK+ IL  I     G+     R  S  
Sbjct: 75  AIEQLEVFNFMCHDYLSMDFSPQANFIIGNNGSGKSAILTGIMLALGGKASTTSRATSLK 134

Query: 63  DVTRIGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
              +                       V G   + + +I  +      ++  + N V+  
Sbjct: 135 GFIQHHKSRAEIKLQMSNCGEEAYRPDVYGEAIIIERAITKDGGGGYKIKSGRDNKVIST 194

Query: 112 VVDELNKHL 120
              EL   L
Sbjct: 195 HRSELQDIL 203


>gi|329767728|ref|ZP_08259244.1| chromosome segregation protein SMC [Gemella haemolysans M341]
 gi|328838829|gb|EGF88423.1| chromosome segregation protein SMC [Gemella haemolysans M341]
          Length = 1184

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 14/155 (9%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +K+  + ++ F+++       F       VG NG GK+NI++AI   L     +  R +S
Sbjct: 1   MKLAKVEVTGFKSFQKKTTFEFKNNLIGVVGPNGSGKSNIIDAIRWVLGEQSAKNLRGSS 60

Query: 61  YADVTRIGSPSFFS-TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             DV   G+       FA V       + + +++ R  R+       D     + ++   
Sbjct: 61  MKDVIFSGTEDAKRKNFAEVAVTFSNGEDNCEIKRRLYRNGDSEYYIDNKRSKLKDITDI 120

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
                +      I +            ++RR  ++
Sbjct: 121 YLDFGINKESYSIITQGKVEDIISSKPVDRRAIIE 155


>gi|92119263|ref|YP_578992.1| hypothetical protein Nham_3828 [Nitrobacter hamburgensis X14]
 gi|91802157|gb|ABE64532.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 604

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I  L I  FR      + F    T+ VG N  GKT ++EA++ L
Sbjct: 1  MQIAKLEIENFRGIREGVVRFSPH-TVLVGSNNCGKTTVVEALALL 45


>gi|86145630|ref|ZP_01063960.1| DNA repair protein RecN [Vibrio sp. MED222]
 gi|85836601|gb|EAQ54727.1| DNA repair protein RecN [Vibrio sp. MED222]
          Length = 554

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR       A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGRS-----DAGMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFLLENNLHATRWLEDNELLDGGECILRRTISKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+    ++         +     +  ++
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMK--SDYQMAMLDQYAGHLNLLKSTRNAYQAWRQADNHLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
               L      + +    +E Q+ EL
Sbjct: 175 E---LRENSQQNQAQKQLLEYQIKEL 197


>gi|71652812|ref|XP_815055.1| structural maintenance of chromosome 3 protein [Trypanosoma cruzi
           strain CL Brener]
 gi|70880081|gb|EAN93204.1| structural maintenance of chromosome 3 protein, putative
           [Trypanosoma cruzi]
          Length = 1200

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 5   IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRAS 60
           + IK + IS FR+Y      +    ++ + VG NG GK+N   A+ F+   +      A 
Sbjct: 1   MHIKNILISGFRSYRDQSFQVDLSPKNNVIVGKNGSGKSNFFAAVQFVLSEKYTTLTAAE 60

Query: 61  YADVTRIGSPS-FFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             ++   GS     S F  +  +  +G   I  + E ++ R  R L +     RV D 
Sbjct: 61  RKELFHAGSGRPALSIFVEIIFDNSDGRLIIPGRAEEKEVRIRRTLGLKQDEFRVNDR 118



 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 92/265 (34%), Gaps = 33/265 (12%)

Query: 92   LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS----MERRRFLDRM 147
            ++ R D   +      ++++  D+  + +R   +VP     +SG S    M R +  +  
Sbjct: 911  VQERRDNDEKKQIQRTLLVQRRDDAMEKIRKLGIVPKDASKYSGQSLGMLMYRLKENNEK 970

Query: 148  VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
            +      +R+ +  +  LM  +N L+ +     +   SI   M  L  K + A       
Sbjct: 971  LKKYSHVNRKAVDQYSSLMETKNELVGQKEILQNELKSIHDLMEHLDKKKDEAVERTFKQ 1030

Query: 208  LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
            +      Y  +  F  I  +     + +  +S                  D      +  
Sbjct: 1031 MQ-----YQFEVVFKEIVATEDCHGELQLVRSAA----------KKNAGEDPYIGARIC- 1074

Query: 268  PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
                 +     +    +   S G++ +V + +  A           AP  L DEI A LD
Sbjct: 1075 -----VSFGLGNAITDLGQLSGGQKSLVALALIFA-----IQRCDPAPFYLFDEIDAALD 1124

Query: 328  EDKRNALFRIV--TDIGSQIFMTGT 350
             + R+++ +++       Q F+T T
Sbjct: 1125 AEYRSSVAKLILKDSENCQ-FITST 1148


>gi|309800465|ref|ZP_07694621.1| DNA repair protein RecN [Streptococcus infantis SK1302]
 gi|308115906|gb|EFO53426.1| DNA repair protein RecN [Streptococcus infantis SK1302]
          Length = 555

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 91/272 (33%), Gaps = 36/272 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    S+ L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIESISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTEVIR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G+E   +I I+ E          ++N  ++ + 
Sbjct: 57  HGAPKAEIEGLFSIENNRTLEEIFDEQGLELSDEIIIRREI-LQNGRSISRVNGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                  ++  +    D+               F D   F +   ++    ++ R+ +  
Sbjct: 116 VLRTIGQQLVDIHGQHDQEELMRPHRHIQMLDEFGDTSFFELKEAYQMSFDNYRRMRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVK---------INIARVEMIN--ALSSLIMEYVQK 218
             +        +    +E QMAE+            +N  R  ++N   ++  +      
Sbjct: 176 LDIKKNQQEHKARIEMLEFQMAEIEAANLKAGEDVTLNQERDRLLNHKHIADTLTNAYSM 235

Query: 219 ENFPHIKLSLTGFLDGKFD-QSFCALKEEYAK 249
            +      SL        D +S      EY +
Sbjct: 236 LDNEEFS-SLANVRSAMNDMESLEEFDPEYRE 266


>gi|242019635|ref|XP_002430265.1| structural maintenance of chromosomes smc1, putative [Pediculus
          humanus corporis]
 gi|212515372|gb|EEB17527.1| structural maintenance of chromosomes smc1, putative [Pediculus
          humanus corporis]
          Length = 1228

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63
          +K + +  F++Y     +      T  +G NG GK+N+++AISF+   +    R    +D
Sbjct: 4  LKLIELENFKSYKGKQIIGPLKSFTAIIGPNGSGKSNLMDAISFVMGEKTTSLRVKRLSD 63

Query: 64 VTR 66
          +  
Sbjct: 64 LIH 66


>gi|119481677|ref|XP_001260867.1| chromosome segregation protein SudA, putative [Neosartorya fischeri
           NRRL 181]
 gi|119409021|gb|EAW18970.1| chromosome segregation protein SudA, putative [Neosartorya fischeri
           NRRL 181]
          Length = 1199

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 84/281 (29%), Gaps = 30/281 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + +K + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRSVRCLQINDVVIRVVD 114
                          A VE +   +D         + L            ++       D
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSDDRFPTGKPEVVLRRTIGLKKDEYTLDRKNATKSD 120

Query: 115 ELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            +N      +   +   I               ER   L  +       +  R  +  ++
Sbjct: 121 VMNLLESAGFSRSNPYYIVPQGRVTALTNMKDSERLNLLKEVAGT--QVYEARRAESLKI 178

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           M   N    +   D      I  ++AEL  + +  R           +EY     +   +
Sbjct: 179 MHETNN--KKAKIDE-LLDFINERLAELEEEKDELRNFQEKDKERRCLEYTI---YSREQ 232

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
             ++G LD   +Q    +++     L   R ++       I
Sbjct: 233 QEISGILDNLEEQRQTGVED---TDLNRDRFIEGEKGMAQI 270



 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 17/193 (8%)

Query: 161  DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
             +    + R  L        +   SIE  ++ L  + + A       +S           
Sbjct: 979  QYNSFTKQRETLTNRREELEASQKSIEELISVLDQRKDEAIERTFKQVSREFASI----- 1033

Query: 221  FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
            F  +  +  G L  +        +E+      D R   S+     +G   S       D+
Sbjct: 1034 FEKLVPAGRGRLIIQRKTDRALRQEDDMDS-DDERAQQSVENYVGVGISVS--FNSKHDE 1090

Query: 281  AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
               I   S G++ +  + +  A           AP  L DEI A+LD   R A+ +++  
Sbjct: 1091 QQRIQQLSGGQKSLCALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQMLQS 1145

Query: 341  I----GSQIFMTG 349
            I      Q   T 
Sbjct: 1146 ISESTNGQFICTT 1158


>gi|325914033|ref|ZP_08176389.1| DNA replication and repair protein RecN [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325539802|gb|EGD11442.1| DNA replication and repair protein RecN [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 554

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 93/278 (33%), Gaps = 38/278 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSPSF-----FSTFAR--------VEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+        F   A            ++  A   ++   R D   R   IN   +   
Sbjct: 57  HGADRAELSAEFQLPAEHPGLNWLADNELDDEAQCQLRRIIRADGGSRA-WINGRPVTSS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168
            + EL   L           + +  S      LD   R     +   R+    ++ L+  
Sbjct: 116 QLAELASKLVEIHGQHEHQALMARNSQL--ALLDAYARNSAQREQV-RQTSQRWQALLDE 172

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQKENFPHI 224
           R+ L  +G   S     +E Q+ EL       R ++    I AL                
Sbjct: 173 RDALSAQGDV-SDRIGFLEHQLGEL------EREDLDPAAIAALDVNHRRQAHATALISA 225

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
             S+   L+G    S   L ++    L    + +    
Sbjct: 226 CDSVAQQLNGDDGASALGLLQDSRHDLARVAEHEPRLG 263


>gi|322806127|emb|CBZ03695.1| DNA repair protein RecN [Clostridium botulinum H04402 065]
          Length = 567

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  F     L + FD    +  G+ G GK+ +++AIS++  G+ F      D+ R
Sbjct: 2  LLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGK-F----NRDLIR 56

Query: 67 IGSP-SFFSTFARVEGMEGLA 86
           G   ++      +E      
Sbjct: 57 TGENKTYVEAIFSIENESTER 77


>gi|304314688|ref|YP_003849835.1| DNA double-strand repair ATPase Rad50 [Methanothermobacter
          marburgensis str. Marburg]
 gi|302588147|gb|ADL58522.1| predicted DNA double-strand repair ATPase Rad50
          [Methanothermobacter marburgensis str. Marburg]
          Length = 837

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 26/49 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + I  L +   R+Y S  + FD   T+F GD G GKT +L AI F   G
Sbjct: 1  MIINSLELRNIRSYESGTVEFDDGVTLFEGDIGSGKTTLLLAIEFALFG 49


>gi|295095266|emb|CBK84356.1| Predicted ATPase [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 362

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          IK L+I  +R+   + L  + Q  I  G NG GK+NI +AI  +
Sbjct: 2  IKNLHIQNYRSIRDMSLELE-QLNIVFGPNGTGKSNIYKAIYLM 44


>gi|224085641|ref|XP_002307647.1| condensin complex components subunit [Populus trichocarpa]
 gi|222857096|gb|EEE94643.1| condensin complex components subunit [Populus trichocarpa]
          Length = 1232

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 6  KIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          KI  L +  F++Y  L  +      T  +G NG GK+N+++AISF+   R    R A   
Sbjct: 9  KILKLEMENFKSYKGLQTIGPFKDFTAIIGPNGAGKSNLMDAISFVLGVRTGHLRGAQLK 68

Query: 63 DVT-----RIGSPSFFSTFARV 79
          D+      R         F R+
Sbjct: 69 DLIYAYDDREKEQKGRRAFVRL 90


>gi|77458517|ref|YP_348022.1| hypothetical protein Pfl01_2290 [Pseudomonas fluorescens Pf0-1]
 gi|77382520|gb|ABA74033.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 409

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 126/361 (34%), Gaps = 56/361 (15%)

Query: 11  NISEFRNYASLRLVFDAQH---TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           +++ F++ A+  L         T  VG NG GK+++L+ + F S     R     DVT  
Sbjct: 24  SVNGFKSLANFSLDEKTGLGNFTCLVGLNGAGKSSVLQLLDFASHL--MRG----DVTNW 77

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
            S   +S       +   ++I I +  R         +       +    + +       
Sbjct: 78  LSKRGWSVSDLHSKLSNSSNIIIGITVRVKSGKLFSWVGSFNRSSLSCTLERI----FEA 133

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
             + IF+     R   L+     I+  +   ++     ++                  + 
Sbjct: 134 EGEYIFNLTRG-RYSILNTQPSKIEFNYVGSILS---ALK---------------DDVLS 174

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI-----KLS-LTGFLDGKFDQSFC 241
            ++ E+   I   R   +  LS  +M    +E    I     KLS     + GK  +   
Sbjct: 175 PEIIEVRNAILNIRS--LELLSPHLMRNSSREAAIDIGTGGEKLSPYLYNIKGKEREKLT 232

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI--TIAHGSTGEQKVVLVGI 299
           AL  E+   +      D   ++   G  +  +I ++  + I     H + G  +++ +  
Sbjct: 233 ALLREFYPAVL-----DFKVKQERAGWKKLSIIEEFNGEIIETEAKHVNDGLLRILAI-- 285

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA A            LL DE+   ++ +    L  ++ + G Q+ +T     + + L+
Sbjct: 286 -LAQA------GSGNATLLFDEVENGVNPEIVERLVHLLQNTGQQVIVTTHSPMILNYLS 338

Query: 360 E 360
           +
Sbjct: 339 D 339


>gi|295706543|ref|YP_003599618.1| DNA repair protein RecN [Bacillus megaterium DSM 319]
 gi|294804202|gb|ADF41268.1| DNA repair protein RecN [Bacillus megaterium DSM 319]
          Length = 575

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 27/207 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F+   T+  G+ G GK+ I++AIS L  GRG      ++  R
Sbjct: 2   LAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRG-----SSEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADIS----IKLETRDD----------RSVRCLQINDVVI-- 110
            G+         +   E          + LE  D                 +IN  ++  
Sbjct: 57  HGTERAEIEGLFLFDEEQHPSHEKAKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTL 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERLM 166
            ++ E+ + L           + +         LD+     V      +R     +  L 
Sbjct: 117 AILREVGQTLIDIHGQHEHQDLMNQD--RHLTLLDQYGGEKVEEALTEYREVFSRYTSLK 174

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +  ++L       +     I+ Q+ E+
Sbjct: 175 KQLDQLTENEQQMAHRLDLIQFQLDEI 201


>gi|190341571|gb|ACE74862.1| RecN [Enterobacter sp. OD1121_04]
          Length = 553

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 70/202 (34%), Gaps = 16/202 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-----RRASY 61
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR       R A+ 
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGRAEGDMVRRGANR 61

Query: 62  ADV-TRI---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD+  R     +P+        +  +G   +  ++ + D RS   +    V +  + EL 
Sbjct: 62  ADLCARFSLKDTPAALRWLEENQLEDGRECLLRRVISSDGRSRGFINGTAVPLSQLRELG 121

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + L       +  ++      +++  LD       +      H R+     R +    + 
Sbjct: 122 QLLIQIHGQHAHQQLIK--PEQQKALLDGYAGEYALTQRMAEHYRQWHQSCRELAQHQQQ 179

Query: 173 LTEGYFDSSWCSSIEAQMAELG 194
             E    +        ++ E  
Sbjct: 180 SQERAARAELLEYQLKELNEFS 201


>gi|225026447|ref|ZP_03715639.1| hypothetical protein EUBHAL_00696 [Eubacterium hallii DSM 3353]
 gi|224956239|gb|EEG37448.1| hypothetical protein EUBHAL_00696 [Eubacterium hallii DSM 3353]
          Length = 340

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA---S 60
          ++ +  + I  F  +  + + F     I VG+NG+GKT++++        R    +    
Sbjct: 2  KMPLTRIKIENFTVFEDITIPFSKGLNILVGENGMGKTHVMKLAYAACQSRKHDVSFSQK 61

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIK 91
             + R           R +  E  A + ++
Sbjct: 62 TTMLFRPDQSGIGRLVNRNKNGENTARVLVE 92


>gi|254450881|ref|ZP_05064318.1| DNA repair protein RecN [Octadecabacter antarcticus 238]
 gi|198265287|gb|EDY89557.1| DNA repair protein RecN [Octadecabacter antarcticus 238]
          Length = 549

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 8/108 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L LVF     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRSLDIRDMLIIDRLELVFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFSTFARVEGME--GLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+       A  +  E  G  D+  +     D ++   +IN    R 
Sbjct: 57  QGADQG-EVIAEFDLPESHGAWDVLREAGFGYDDALILRRINGRDGRK 103


>gi|108759006|ref|YP_633500.1| DNA repair protein RecN [Myxococcus xanthus DK 1622]
 gi|108462886|gb|ABF88071.1| DNA repair protein RecN [Myxococcus xanthus DK 1622]
          Length = 578

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 96/299 (32%), Gaps = 48/299 (16%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L IS       + + F A  T+  G+ G GK+ +++A+  L  GR     + ADV R G 
Sbjct: 5   LRISNVAVIEEVEVAFGAGLTVLTGETGAGKSILVDALGLLLGGR-----ADADVIRAGC 59

Query: 70  PSF--FSTFARVEGME------GLADISIKLETRD--DRSVR-CLQINDVVIR------- 111
                   FAR   +E      GL D+  ++  R    R+ R    +N  ++        
Sbjct: 60  EEASVEGVFARTPALETRLEELGLPDLGEEVLVRRVLGRTGRGKAYVNGSLVTVGVLGKL 119

Query: 112 ---VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM---IDFERL 165
               VD   +H  +S     + R+     ++R   L+ ++ A    +          E L
Sbjct: 120 TRGAVDIAGQHEHVSLFDSGLHRVL----LDRYGNLEDVLAAFFREYTGLREMDARMEAL 175

Query: 166 ------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
                 +R R   L     + +       + A L  +    R+     L     E     
Sbjct: 176 GGDEAKVRERAEFLRFQLDEITRLDPEADEDARLDAE--RKRLGGAEKLKRHASEAELLV 233

Query: 220 NFPHIKLSLT-------GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           +        T            K D +   + +  +  L +  +      R + G    
Sbjct: 234 SGEEQSAVETVGRALGLVHESVKCDATLAPVAQALSTALSELEEAQRRLNRYVEGLESD 292


>gi|83589043|ref|YP_429052.1| hypothetical protein Moth_0173 [Moorella thermoacetica ATCC
          39073]
 gi|83571957|gb|ABC18509.1| hypothetical protein Moth_0173 [Moorella thermoacetica ATCC
          39073]
          Length = 729

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 1  MTNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          M   I+IK + +  F+ +     +  DA   I  G+NG GKT+ +EA+  ++ G+
Sbjct: 1  MEETIRIKEITLEGFKCFFKKQSINCDADVIILTGNNGFGKTSFIEALELMATGK 55


>gi|28199257|ref|NP_779571.1| recombination protein N [Xylella fastidiosa Temecula1]
 gi|182681983|ref|YP_001830143.1| DNA repair protein RecN [Xylella fastidiosa M23]
 gi|32129943|sp|Q87BS5|RECN_XYLFT RecName: Full=DNA repair protein recN; AltName: Full=Recombination
           protein N
 gi|28057363|gb|AAO29220.1| recombination protein N [Xylella fastidiosa Temecula1]
 gi|182632093|gb|ACB92869.1| DNA repair protein RecN [Xylella fastidiosa M23]
 gi|307578248|gb|ADN62217.1| DNA repair protein RecN [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 557

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 21/115 (18%)

Query: 7   IKFLNISEF---RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++ L I +F   RN     L F    T+  G+ G GK+ I++A+ FLS  R     + + 
Sbjct: 2   LRHLTIKDFAVVRNIE---LEFGPGMTVVSGETGAGKSLIIDALGFLSGLR-----ADSS 53

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           V R G+          E  E  A+  I +       +R ++++D     +  + +
Sbjct: 54  VVRHGA----------ERAELSAEFDITIHHHARVWLRNVELDDGDQCQLRRIIR 98


>gi|326406204|gb|ADZ63275.1| conserved hypothetical protein [Lactococcus lactis subsp. lactis
           CV56]
          Length = 847

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 75/196 (38%), Gaps = 12/196 (6%)

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            E      + +   A++     K+     + I   S LI     + +   I +       
Sbjct: 505 KESETIQKFFNEYNAKLI--AEKLLPKIEDYILKTSWLIKAEKCRVSTQSITVKQNELFS 562

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
               + +    +   ++L    ++DS+ R T IG  ++ L +   +        S GEQ+
Sbjct: 563 KYVTEDYKEKFKSECQELKVNIEIDSVQRGT-IGSTKNKLSIKGKNLD---KILSEGEQR 618

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTD 351
            V +  FLA     +  +     ++ D+  + LD ++R+ + + +  +    Q+ +   D
Sbjct: 619 SVALANFLAE----TEISEENVCVIFDDPVSSLDYERRDRIAKRLVKLAKSKQVVVLTHD 674

Query: 352 KSVFDSLNETAKFMRI 367
            S   SL + AK   +
Sbjct: 675 LSFMRSLEDLAKTDEV 690


>gi|229526956|ref|ZP_04416353.1| hypothetical protein VCG_000024 [Vibrio cholerae 12129(1)]
 gi|229335568|gb|EEO01048.1| hypothetical protein VCG_000024 [Vibrio cholerae 12129(1)]
          Length = 630

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 27/46 (58%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +++I  +++  F+ +  + ++ +    I +G+N  GK++I EAI  
Sbjct: 2  KLRINKISLKNFKTFKDITIIPNTDFNIVIGENSAGKSSIFEAIHL 47


>gi|171910724|ref|ZP_02926194.1| SMC domain protein [Verrucomicrobium spinosum DSM 4136]
          Length = 920

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++ K + +  +R +  + +  D    +  G N  GK+ +LEA  +    R
Sbjct: 1  MRFKSITVRNYRVHREVTVPLDPMLNVIGGPNEAGKSTLLEAARYALFLR 50


>gi|168180465|ref|ZP_02615129.1| DNA repair protein recN [Clostridium botulinum NCTC 2916]
 gi|182668694|gb|EDT80672.1| DNA repair protein recN [Clostridium botulinum NCTC 2916]
          Length = 567

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  F     L + FD    +  G+ G GK+ +++AIS++  G+ F      D+ R
Sbjct: 2  LLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGK-F----NRDLIR 56

Query: 67 IGSP-SFFSTFARVEGMEGLA 86
           G   ++      +E      
Sbjct: 57 TGENKTYVEAIFSIENESTER 77


>gi|145344383|ref|XP_001416713.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576939|gb|ABO95006.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1225

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           +I  + +  F++Y    ++      T  VG NG GK+N+++AISF+   R    R  ++ 
Sbjct: 10  RIDRIEVENFKSYKGKHQIGPFKSFTSVVGPNGSGKSNLMDAISFVLGVRSAQLRGTTFK 69

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
           D+       +    A        A +++  E  ++R +   ++
Sbjct: 70  DLI------YTVDLADASENRRSARVTLAYEPENEREILFSRV 106


>gi|320162926|gb|EFW39825.1| XCAP-E [Capsaspora owczarzaki ATCC 30864]
          Length = 1253

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + +  + I  F++YA       FD +     G NG GK+NIL++I F   +S     R  
Sbjct: 1   MHLHEIIIEGFKSYAQRTTVGPFDERFNAITGLNGSGKSNILDSICFVLGISNLTQVRAG 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          +            G E    I++  +       + L IN 
Sbjct: 61  NLQELVYKQGQAGVTKATVTIVFDNMDKKSSPVGYEDSDQITVTRQVIIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
           V  +     N    +   V +   +    
Sbjct: 120 VNAQQQRVQNLFHSVQLNVNNPHFLIMQG 148


>gi|183600189|ref|ZP_02961682.1| hypothetical protein PROSTU_03733 [Providencia stuartii ATCC
          25827]
 gi|188022486|gb|EDU60526.1| hypothetical protein PROSTU_03733 [Providencia stuartii ATCC
          25827]
          Length = 649

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + I+ +N+  FR++      +  D   T  VG NG GKT +++A+
Sbjct: 1  MHIERINLQNFRSFGPGGQSIAVDPNLTTLVGANGAGKTVLMQAL 45


>gi|50306843|ref|XP_453397.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642531|emb|CAH00493.1| KLLA0D07502p [Kluyveromyces lactis]
          Length = 1243

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYAS-LRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          ++  L +  F++Y   +++ F     T  +G NG GK+N+++AISF+   R    R ++ 
Sbjct: 3  RLIGLELHNFKSYKDTVQVGFGESYFTSIIGPNGSGKSNLMDAISFVLGVRSNQLRSSAL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 VDLIYRG 69


>gi|77918666|ref|YP_356481.1| hypothetical protein Pcar_1061 [Pelobacter carbinolicus DSM 2380]
 gi|77544749|gb|ABA88311.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380]
          Length = 712

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 4/85 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + ++ L +  F  +    + F     +  G N  GKT +++A+S +  G        + +
Sbjct: 1  MMLRRLELQAFGRFRDEVVEFAPGINLVSGPNESGKTTLVQALSAVLFG----TPEASRL 56

Query: 65 TRIGSPSFFSTFARVEGMEGLADIS 89
              SP         E       I 
Sbjct: 57 IPWESPDNCRAALVWEADGRQVRIE 81


>gi|50556870|ref|XP_505843.1| YALI0F24783p [Yarrowia lipolytica]
 gi|49651713|emb|CAG78654.1| YALI0F24783p [Yarrowia lipolytica]
          Length = 1172

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           +K++ L I  F++YA+  +   +D Q     G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MKVEELVIDGFKSYATRTVISGWDPQFNCITGLNGSGKSNILDAICFVLGITTMATVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L    
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNSDTATSPIGFEKYAQISVTRQIVLGGTSKYLINGH 120

Query: 108 VVIRV 112
              + 
Sbjct: 121 RAQQQ 125



 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 283  TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-- 340
            ++A  S G++ +V + + LA  +        AP+ +LDE+ A LD +    +  ++    
Sbjct: 1082 SLAELSGGQRSLVALSLILALLQF-----KPAPMYILDEVDAALDLNHTQNIGHLIKTRF 1136

Query: 341  IGSQIFMTGTDKSVFDS 357
             GSQ  +    +  F +
Sbjct: 1137 KGSQFIVVSLKEGFFSN 1153


>gi|254411669|ref|ZP_05025445.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181391|gb|EDX76379.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 353

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 134/383 (34%), Gaps = 52/383 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-------HTIFVGDNGVGKTNILEAISF---LSPGR 54
           +K++ + +  F+ +      F            + +G NG GKT++L+AI+    ++ GR
Sbjct: 1   MKVQSIELKYFKKFRDSTFDFTDSETGLARDIIVLIGMNGTGKTSLLQAIAATLGVATGR 60

Query: 55  GFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
              + +  D          + + R E       + ++   ++  +V+         + + 
Sbjct: 61  -LEKLTDLDWVGFNHELLGNNWGRFE---PEVTLKVQFSAQELHAVQEFH------QKLQ 110

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAID-PRHRRRMIDFE-RLMRGRN 170
           E+ +HL +    P+ D + +      R   D    +F      + ++++  E   +  R 
Sbjct: 111 EMGRHLPV---PPAEDYLATLRWQGERVQADTAAQLFQFKGRDYAKQVLRSEGFYVFERV 167

Query: 171 RLL---TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
             +   TE    +S  S    Q  E+   I   R+       S   ++ Q      IK  
Sbjct: 168 GTVFWYTEQRTSTSLTSEDPDQKLEITENILRDRL-------SKWRQFHQDVETGRIK-- 218

Query: 228 LTGFLDGKFDQSFCALKEEYAKKL-FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
               L       +  ++  Y K       +                  +        I+ 
Sbjct: 219 ---QLRPGQKDVYAEIERAYQKVFPERSFEGPVPRENIDDILSEPWFYLHDSKNQYEISE 275

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQ 344
            S GE+ +  + +  A+  +         ++L+DE+  HL    + AL R +  +G  +Q
Sbjct: 276 MSGGERAIFPILMDFANWNI------HNSVILIDELELHLHPPMQQALLRTLPKLGKNNQ 329

Query: 345 IFMTGTDKSVFDSLNETAKFMRI 367
             +T T     + L   A  +R+
Sbjct: 330 FIIT-THSDYVEQLVPEAHIIRL 351


>gi|189485594|ref|YP_001956535.1| chromosome segregation protein SMC [uncultured Termite group 1
          bacterium phylotype Rs-D17]
 gi|170287553|dbj|BAG14074.1| chromosome segregation protein SMC [uncultured Termite group 1
          bacterium phylotype Rs-D17]
          Length = 1155

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60
          + +K + +  F+++A    L F+   +  VG NG GK+NI ++I +       +  R ++
Sbjct: 1  MHLKKVEVCGFKSFADRTVLDFEPGISGIVGPNGCGKSNISDSIRWCLGEQKAKSMRSSN 60

Query: 61 YADVT 65
            +V 
Sbjct: 61 MQEVI 65


>gi|91087405|ref|XP_975667.1| PREDICTED: similar to structural maintenance of chromosomes 5 smc5
           [Tribolium castaneum]
 gi|270009507|gb|EFA05955.1| hypothetical protein TcasGA2_TC008773 [Tribolium castaneum]
          Length = 1043

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 12/133 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           I+ + +  F  Y+   L       + +G NG GK+ I+ AI  L  G       R    +
Sbjct: 7   IRKIEVKNFVTYSYAELYPGPNLNMLIGPNGTGKSTIVAAI-ILGLGGNPKTVGRGVRVS 65

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISI-KLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           +  +       +    ++G +    I I ++    D++   +    V ++ V +  K   
Sbjct: 66  EYVKHNCEEA-TIHIYLQGRKDNDFIKITRIFNTHDKTGWLVNNQRVTLKEVMDCIKQYN 124

Query: 122 ISW-----LVPSM 129
           I        +P  
Sbjct: 125 IQVDNLCQFLPQD 137


>gi|71032343|ref|XP_765813.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68352770|gb|EAN33530.1| SMC protein, putative [Theileria parva]
          Length = 1322

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF--LSPGRGFRRASYAD 63
           I  + +  F++Y  ++ +   A     +G NG GK+N+++AISF         R  +  D
Sbjct: 74  IHAIELHNFKSYFGTVLIDKFASFNAIIGPNGSGKSNLMDAISFVLCIRTSTLRGNNLRD 133

Query: 64  VTR 66
           +  
Sbjct: 134 LIN 136


>gi|313157427|gb|EFR56849.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 349

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          + I+ + +  F+ + S  + F    ++ VG N  GK+ IL A++     + F
Sbjct: 1  MHIESITLKNFKKFTSKTIKFHQGLSLLVGGNNEGKSTILHALAVWEFCKTF 52


>gi|190341545|gb|ACE74849.1| RecN [Enterobacter ludwigii]
          Length = 553

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 70/202 (34%), Gaps = 16/202 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-----RRASY 61
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR       R A+ 
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGRAEGDMVRRGANR 61

Query: 62  ADV-TRI---GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD+  R     +P+        +  +G   +  ++ + D RS   +    V +  + EL 
Sbjct: 62  ADLCARFSLKDTPAALRWLEENQLEDGRECLLRRVISSDGRSRGFINGTAVPLSQLRELG 121

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + L       +  ++      +++  LD       +      H R+     R +    + 
Sbjct: 122 QLLIQIHGQHAHQQLIK--PEQQKALLDGYAGEYALTQRMAEHYRQWHQSCRELAQHQQQ 179

Query: 173 LTEGYFDSSWCSSIEAQMAELG 194
             E    +        ++ E  
Sbjct: 180 SQERAARAELLEYQLKELNEFS 201


>gi|15240258|ref|NP_200954.1| MIM (hypersensitive to MMS, irradiation and MMC); ATP binding
           [Arabidopsis thaliana]
 gi|10177176|dbj|BAB10445.1| SMC-like protein [Arabidopsis thaliana]
 gi|332010088|gb|AED97471.1| protein MIM [Arabidopsis thaliana]
          Length = 1057

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 82/263 (31%), Gaps = 21/263 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I  + +  F  +++L++ F        G NG GK+ IL A+      R     R A+  D
Sbjct: 22  ILRIKVENFMCHSNLQIEFGEWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAATLKD 81

Query: 64  VTRIGSPSFFSTFARVEGME---------GLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             + G              E         G+  I  ++      +V    +   V    D
Sbjct: 82  FIKTGCSYAVVQVEMKNSGEDAFKPEIYGGVIIIERRITESATATVLKDYLGKKVSNKRD 141

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + +    +      +       R       + + + + + +      L++  N LL 
Sbjct: 142 ELRELVEHFNIDVENPCVVMSQDKSRE-----FLHSGNDKDKFKFFFKATLLQQVNDLLQ 196

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
             Y   +  ++I  ++      I       I+ L   I    Q E        L   L  
Sbjct: 197 SIYEHLTKATAIVDELENTIKPIEKE----ISELRGKIKNMEQVEEIAQRLQQLKKKLAW 252

Query: 235 KFDQSFCALKEEYAKKLFDGRKM 257
            +        +E  +K+   ++ 
Sbjct: 253 SWVYDVDRQLQEQTEKIVKLKER 275


>gi|325849116|ref|ZP_08170608.1| RecF/RecN/SMC N-terminal domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480361|gb|EGC83424.1| RecF/RecN/SMC N-terminal domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 463

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 66/176 (37%), Gaps = 27/176 (15%)

Query: 6   KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASY 61
           +++ + +  F+++    ++ F+ Q T  VG NG GK+NI +AI   L     +  R    
Sbjct: 5   RLESVELKGFKSFAERTKIKFNNQITAVVGPNGSGKSNIADAIKWVLGEQSVKSLRGKKM 64

Query: 62  ADVTRIGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            DV   GS             SF +    +     L  IS ++    D   R   +N   
Sbjct: 65  DDVIFQGSDQKKPMNMAEVNLSFDNKDRALSSDYDLVKISRRIYRNGDNEYR---LNGKR 121

Query: 110 IRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
           +R+ D         + K          +D I +  + ERR   +        ++RR
Sbjct: 122 VRLKDVKELFLDTGIGKEGYSVIGQGRIDEILNSSNQERRNIFEEASGIATHKYRR 177


>gi|293374744|ref|ZP_06621052.1| chromosome segregation protein SMC [Turicibacter sanguinis PC909]
 gi|292646658|gb|EFF64660.1| chromosome segregation protein SMC [Turicibacter sanguinis PC909]
          Length = 1191

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K +    F+++A   +  F+   T  VG NG GK+NI ++I   L     +  R   
Sbjct: 1   MYLKRIETIGFKSFADKTVVEFERGVTAVVGPNGSGKSNISDSIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+      +F      ++       I    + +  R  R+      IN   +R
Sbjct: 61  MEDIIFAGTSTRKPLNFAEVTLVLDNSCQSLPIDYDEVSITRRVYRTGDSEYLINKQKVR 120

Query: 112 VVDEL-------NKHLRISWLVPSMDRIFSGLSMERRRFL 144
           + D +         H  +S +     +      +E RR +
Sbjct: 121 LKDVIDLIMDSGIGHDSLSIISQDKVKAIVEARVEDRRVI 160


>gi|168186923|ref|ZP_02621558.1| putative RecF/RecN/SMC N domain [Clostridium botulinum C str.
           Eklund]
 gi|169295224|gb|EDS77357.1| putative RecF/RecN/SMC N domain [Clostridium botulinum C str.
           Eklund]
          Length = 767

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RR 58
           M   I +K L +  F+    L + F  + T   G+N  GKT I++A ++L   +    R 
Sbjct: 1   MGKNIFLKKLALRNFKGIKDLNIDFS-KVTNIYGENATGKTTIVDAFTWLLFDKDSQDRV 59

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
           A   + +     +       + G+E      + ++ +D    +  +      R
Sbjct: 60  AGDKE-SNFQIKTLDKNGQVLHGLEHEVIGVLSIDGKDITLSKIYKEKWTKRR 111


>gi|307708725|ref|ZP_07645188.1| DNA repair protein RecN [Streptococcus mitis NCTC 12261]
 gi|307615299|gb|EFN94509.1| DNA repair protein RecN [Streptococcus mitis NCTC 12261]
          Length = 555

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 23/207 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G+E   +I I+ E          ++N  ++ + 
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLEMGDEIIIRREI-LQNGRSISRVNGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+               F D   + +   ++     + ++ +  
Sbjct: 116 VLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDVAFWDLKETYQTSFDAYRKMRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVK 196
             +        +    +E QMAE+   
Sbjct: 176 LEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|290894512|ref|ZP_06557466.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J2-071]
 gi|290555934|gb|EFD89494.1| conserved hypothetical protein [Listeria monocytogenes FSL
          J2-071]
          Length = 548

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 7  IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          IK + I  F+       L       I VG+N  GK+ ILEAI  L+    FR 
Sbjct: 2  IKKIKIENFKCINGCFELDLTTGINILVGNNEAGKSTILEAIH-LALSGIFRG 53


>gi|254293428|ref|YP_003059451.1| chromosome segregation protein SMC [Hirschia baltica ATCC 49814]
 gi|254041959|gb|ACT58754.1| chromosome segregation protein SMC [Hirschia baltica ATCC 49814]
          Length = 1165

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 53/285 (18%), Positives = 93/285 (32%), Gaps = 39/285 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +    L I  F+++A  +        T  VG NG GK+NILE++ ++   +  R  R   
Sbjct: 1   MHFTGLKIVGFKSFADPVDFAIREGLTGIVGPNGCGKSNILESLRWVMGATSARAMRGGE 60

Query: 61  YADVTRIG-------SPSFFSTFARVEGMEGLADI----SIKLETRDDRS-VRCLQINDV 108
             D+   G         +  +           A++     ++++ R  R      +IN  
Sbjct: 61  MDDLIFSGSSNRPQRENAEVALILDNSARRAPAELNDSDELEVKRRLRRGAGSTYKINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR--MVFAIDPRHRRR 158
            +R  D   L          P++ R      + +     RRR L+    +  ++ R    
Sbjct: 121 TVRAKDVQLLFADASTGANSPALVRQGQISELIASKPQNRRRILEEAAGIAGLNQR---- 176

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-----GVKINIARVEMINALSSLIM 213
               E  ++ R    +    D       + Q+  L       K   A  E I  L + I 
Sbjct: 177 --RHEAELKLRGAADSLSRLDEIIGEV-DKQLNTLKRQASRAKKYRALQEQIETLEAQIA 233

Query: 214 EYVQKENFPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGRKM 257
            Y  K       L+    L+     Q +  L+   A      R  
Sbjct: 234 YYKWKTAREETALAQASVLETSQSVQEYAQLEASCAAAELKLRDQ 278


>gi|255718699|ref|XP_002555630.1| KLTH0G13750p [Lachancea thermotolerans]
 gi|238937014|emb|CAR25193.1| KLTH0G13750p [Lachancea thermotolerans]
          Length = 1399

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 8/114 (7%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
           R+ I  L++  F++YA  ++   F +  +  VG NG GK+N+++++ F+   R    R+ 
Sbjct: 126 RLCINRLSLHNFKSYAGTQVVGPFHSSFSAVVGPNGSGKSNVIDSLLFVFGFRANKMRQG 185

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
             +D+              VE         ++ E     +VR  +   VV R  
Sbjct: 186 KLSDLIHKSEAHPNLDSCHVEVFFQY----VQDELDGRTTVRQDRPGLVVTRKA 235


>gi|256822389|ref|YP_003146352.1| chromosome segregation protein SMC [Kangiella koreensis DSM 16069]
 gi|256795928|gb|ACV26584.1| chromosome segregation protein SMC [Kangiella koreensis DSM 16069]
          Length = 1165

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 100/283 (35%), Gaps = 44/283 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     +   +  T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLKQIKLAGFKSFVDPTTVSLPSNLTAIVGPNGCGKSNLIDAVRWVMGESSAKNLRGDA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGME-GLADISIKLETRDDRSVRCLQIND 107
             DV   GS              F ++   V+G      +IS+K     +       +N 
Sbjct: 61  MTDVIFNGSTGRKPVGQASIELVFDNSDGTVQGEFANYNEISVKRMVNREAQS-SYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   RIF   +       ERR+ 
Sbjct: 120 TRCRRKDITDIFLGTGLGPRSYAIIEQGMISRLIESKPHELRIFLEEAAGISKYKERRKE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
            +  +      +  R+ D    +  +   L      +      +A+  EL  ++   R +
Sbjct: 180 TENRIRH-TRDNLDRLTDLRDELGKQLSHLKRQATSAQRYKEYKAEERELKAQLAAIRWQ 238

Query: 204 MINALSSLIMEYVQKENFP-HIKLSLTGFLDGKFDQSFCALKE 245
             N+    + + +QK       K++     D + ++S     E
Sbjct: 239 TFNSKIEALDDAIQKMETEVEAKIADQRNSDSEIEKSRELHIE 281


>gi|171686230|ref|XP_001908056.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943076|emb|CAP68729.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1200

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +  + VG NG GK+N   AI F
Sbjct: 1  MHIKQIIIQGFKSYKEQTVIEPFSPKTNVIVGRNGSGKSNFFAAIRF 47



 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 100/282 (35%), Gaps = 24/282 (8%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS-----MDRI 132
            + +  + L ++  ++E    +  + +Q    +I    E  K++R   ++P       +++
Sbjct: 892  KAQKEQELQELQRRIEQYQKKMEKAIQTRARLISQAAEYAKNIRDLGILPEEAFGKYEKM 951

Query: 133  FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
             S     R   +++ +      +++    +      R+ LL       +  +SIE  +  
Sbjct: 952  KSEQIETRLAKVNQALKKYKHINKKAFDQYNSFTTQRDNLLKRRKELDTSQASIETLIEH 1011

Query: 193  LGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
            L  + + A       +S       +K     H +L +    D   +++     +E     
Sbjct: 1012 LDQEKDEAIERTFKQVSKEFSTIFEKLVPAGHGRLVIQRKADRAKNRAANNDSDEEVVSG 1071

Query: 252  FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
             +          T +G   S       D+   I   S G++ +  + +  A         
Sbjct: 1072 VES--------YTGVGISVS-FNSKVMDEQQKIQQLSGGQKSLCALCLIFAL-----QAA 1117

Query: 312  GFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTG 349
              +P ++ DE+ A+LD   R A+  ++  I     +Q   T 
Sbjct: 1118 ESSPFVIFDEVDANLDAQYRTAVASLLQSISEEQKTQFICTT 1159


>gi|149019194|ref|ZP_01834556.1| DNA repair protein RecN [Streptococcus pneumoniae SP23-BS72]
 gi|147931064|gb|EDK82043.1| DNA repair protein RecN [Streptococcus pneumoniae SP23-BS72]
          Length = 555

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RS+  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL         + +              F D   + +   ++     + ++ + 
Sbjct: 117 LRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
              +        +    +E QMAE+      A
Sbjct: 175 VLEVKKNQQEHKARIEMLEFQMAEIEAANLQA 206


>gi|113475236|ref|YP_721297.1| ATPase-like protein [Trichodesmium erythraeum IMS101]
 gi|110166284|gb|ABG50824.1| ATPase-like protein [Trichodesmium erythraeum IMS101]
          Length = 391

 Score = 53.4 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 21/42 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          I  L I  FR    L L    Q  + VG N  GKT++LEAI 
Sbjct: 6  IDNLTIHHFRGIRDLTLENLGQINLLVGVNNSGKTSVLEAIY 47


>gi|242277528|ref|YP_002989657.1| DNA repair ATPase-like protein [Desulfovibrio salexigens DSM
          2638]
 gi|242120422|gb|ACS78118.1| ATPase involved in DNA repair-like protein [Desulfovibrio
          salexigens DSM 2638]
          Length = 446

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          IK + +  F  +A   +      T+  G N  GK++I+EA+  ++              R
Sbjct: 2  IKKILLKNFLAHAETEIEPGPGMTVLTGPNNSGKSSIVEALRCIAT-----NPLPKHFIR 56

Query: 67 IGSPSFFSTFARVEGME 83
           G+          +G+ 
Sbjct: 57 HGAKQARVELEMDDGVR 73


>gi|89052865|ref|YP_508316.1| chromosome segregation protein SMC [Jannaschia sp. CCS1]
 gi|88862414|gb|ABD53291.1| Chromosome segregation protein SMC [Jannaschia sp. CCS1]
          Length = 1151

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 104/298 (34%), Gaps = 42/298 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R A 
Sbjct: 1   MRFTKLRLNGFKSFVDPTDLVIADGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGAG 60

Query: 61  YADVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-------INDV 108
             DV         + +F     +++  + LA      E + D   R  +       +N  
Sbjct: 61  MEDVIFGGAATRNARNFAEVSLQIDNTDRLAPAGFNEEDQIDIIRRITRDAGSAYKLNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVSMLFADASTGAHSPALVRQGQISELINARPKARRRVLE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMIN---ALSSLIMEYV 216
             E  ++ +         D      + +Q+  L  +    AR   I     L+  ++ +V
Sbjct: 177 RHEAELKLKGAEANLARIDDV-LDQLASQLNTLARQAKQAARYREIGTELRLTEGLLLFV 235

Query: 217 QKENFPHIKLSLTGFLDGKF---------DQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
           +  +    +L     L              ++    +E+  + L   R+ D+++   L
Sbjct: 236 RWRDADAARLRAEDALRDGLTAAAQAEVAARTAVEAREQAEEDLPPLREEDTIAAAIL 293


>gi|551689|gb|AAA22209.1| unidentified ORF2 (ttg start codon) [Bacillus subtilis]
          Length = 111

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F     L + F+   T+  G+ G GK+ I++AIS L  GRG      ++  R
Sbjct: 2  LAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRG-----SSEFVR 56

Query: 67 IGSP 70
           G  
Sbjct: 57 YGEA 60


>gi|78189267|ref|YP_379605.1| ATPase-like [Chlorobium chlorochromatii CaD3]
 gi|78171466|gb|ABB28562.1| ATPase-like protein [Chlorobium chlorochromatii CaD3]
          Length = 419

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 69/386 (17%), Positives = 136/386 (35%), Gaps = 57/386 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L ++ ++++A   L  D   TI +G N  GK+N L+A+ FL      R +S      
Sbjct: 2   IKQLTLTNWKSFAEATLYIDP-LTILIGTNASGKSNTLDALLFLQ-----RVSS------ 49

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS--- 123
            G P F +    V        +        +     +  +   +   +E    L +    
Sbjct: 50  -GIPIFQAIAGDVNLTPLRGGMEWVCRKPFNTFTLTVLTDG--LSKDEEYRYTLTVQVNG 106

Query: 124 ----WLVPSMDRIFSG----LSMERRRF---LDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
                L   +  +  G     S E+R F   LD +     P +           RGR   
Sbjct: 107 TKAEILHEELTLLIYGTNRTTSKEKRLFKTELDEINHPSIPTYCYTGTQ----GRGRRFD 162

Query: 173 LTEGYFDSSWCSSIE-AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS---- 227
           L   +   +   ++   +  + G K+ + +++ I     +              LS    
Sbjct: 163 LLRSHTILNQTETLNVRKEVQEGAKLVMTQLQRIFVFDPIPSHMRNYAPLAETLLSDGSN 222

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT-LIGPHRSDLIVDYCDK------ 280
           L G L G        +++     L    + D     T  +G  +SD ++   +       
Sbjct: 223 LAGVLAGLEPSRKIEVEKTLTTYLKALPERDIKRVWTEHVGKFQSDAMLYCEEGWSNETT 282

Query: 281 -AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
             I     S G  +   + I  A   L++  +G   +L+++E+   L   + + L R++ 
Sbjct: 283 QEIDARGMSDGTLR--YLAIVTA---LLTRQSG--SLLVIEEVDNGLHPSRAHLLIRMLK 335

Query: 340 DIGSQ----IFMTGTDKSVFDSLNET 361
           ++G Q    + +T  + ++ D+    
Sbjct: 336 ELGKQRGIDLIITTHNPALLDAAGNR 361


>gi|71002120|ref|XP_755741.1| chromosome segregation protein SudA [Aspergillus fumigatus Af293]
 gi|66853379|gb|EAL93703.1| chromosome segregation protein SudA, putative [Aspergillus
           fumigatus Af293]
 gi|159129796|gb|EDP54910.1| chromosome segregation protein SudA, putative [Aspergillus
           fumigatus A1163]
          Length = 1199

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 84/281 (29%), Gaps = 30/281 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + +K + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRSVRCLQINDVVIRVVD 114
                          A VE +   +D         + L            ++       D
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSDDRFPTGKPEVVLRRTIGLKKDEYTLDRKNATKSD 120

Query: 115 ELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            +N      +   +   I               ER   L  +       +  R  +  ++
Sbjct: 121 VMNLLESAGFSRSNPYYIVPQGRVTALTNMKDSERLNLLKEVAGT--QVYEARRAESLKI 178

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           M   N    +   D      I  ++AEL  + +  R           +EY     +   +
Sbjct: 179 MHETNN--KKAKIDE-LLDFINERLAELEEEKDELRNFQEKDKERRCLEYTI---YSREQ 232

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
             ++G LD   +Q    +++     L   R ++       I
Sbjct: 233 QEISGILDNLEEQRQTGVED---TDLNRDRFIEGEKGMAQI 270



 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 63/193 (32%), Gaps = 17/193 (8%)

Query: 161  DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
             +    + R  L +      +   SIE  ++ L  + + A       +S           
Sbjct: 979  QYNSFTKQRETLTSRREELEASQKSIEELISVLDQRKDEAIERTFKQVSREFANI----- 1033

Query: 221  FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
            F  +  +  G L  +        +E+      D R   S+     +G   S       D+
Sbjct: 1034 FEKLVPAGRGRLIIQRKTDRALRQEDDMDS-DDERAQQSVENYVGVGISVS--FNSKHDE 1090

Query: 281  AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
               I   S G++ +  + +  A           AP  L DEI A+LD   R A+ +++  
Sbjct: 1091 QQRIQQLSGGQKSLCALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQMLQS 1145

Query: 341  I----GSQIFMTG 349
            I      Q   T 
Sbjct: 1146 ISESTNGQFICTT 1158


>gi|227513482|ref|ZP_03943531.1| DNA repair protein RecN [Lactobacillus buchneri ATCC 11577]
 gi|227083355|gb|EEI18667.1| DNA repair protein RecN [Lactobacillus buchneri ATCC 11577]
          Length = 564

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 71/196 (36%), Gaps = 19/196 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF---RRASYA 62
           +  L+I++F     L + F +  T+  G+ G GK+ I++A+  L  GR      R  +  
Sbjct: 2   LLELSITDFAIIEHLDIEFQSGMTVLTGETGAGKSIIIDAVGLLVGGRGSHDLIRTGAKK 61

Query: 63  DVTR------IGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRC--LQINDVVIRVV 113
            V +        +P++       ++  +G   I  ++      S R   + IN   +R +
Sbjct: 62  SVIQGNFILSDDNPTYEVLDELGIDHSDGNVIIEREIFASGRNSCRVNGMMINIATLRRI 121

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRMIDFERLMRGRNRL 172
            E    ++          +           LD      I P   +   D+++ ++ R   
Sbjct: 122 GETMVDIQGQ---NEHQELMK--PERHIELLDDFAEDTIQPVLVKYQKDYDQFVKLRAIN 176

Query: 173 LTEGYFDSSWCSSIEA 188
             +   +  W   ++ 
Sbjct: 177 EKKHQNEKEWAQRVDM 192


>gi|226949175|ref|YP_002804266.1| DNA repair protein recN [Clostridium botulinum A2 str. Kyoto]
 gi|226842306|gb|ACO84972.1| DNA repair protein recN [Clostridium botulinum A2 str. Kyoto]
          Length = 567

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  F     L + FD    +  G+ G GK+ +++AIS++  G+ F      D+ R
Sbjct: 2  LLQLNIKNFALIEELSISFDKGFNVLTGETGAGKSILIDAISYVLGGK-F----NRDLIR 56

Query: 67 IGSP-SFFSTFARVEGMEGLA 86
           G   ++      +E      
Sbjct: 57 TGENKTYVEAIFSIENESTER 77


>gi|269860042|ref|XP_002649744.1| chromosome segregation protein cut3 [Enterocytozoon bieneusi
          H348]
 gi|220066803|gb|EED44274.1| chromosome segregation protein cut3 [Enterocytozoon bieneusi
          H348]
          Length = 1082

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 5  IKIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRA 59
          +K+K + +  F++Y        F  + T  VG NG GK+N+L+AI     G      R  
Sbjct: 2  LKLKEIYLYNFKSYKGKHKIGPFCDKFTAIVGPNGCGKSNLLDAI-LFGLGYSAKKLRHT 60

Query: 60 SYADVTRIGSPS 71
          +  D    G   
Sbjct: 61 NLKDTIYKGESE 72


>gi|84496708|ref|ZP_00995562.1| putative DNA repair protein [Janibacter sp. HTCC2649]
 gi|84383476|gb|EAP99357.1| putative DNA repair protein [Janibacter sp. HTCC2649]
          Length = 569

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 74/245 (30%), Gaps = 41/245 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I+I+ L I +        + F    T+  G+ G GKT ++ ++  L   R      
Sbjct: 1   MLQEIRIQDLGIID-----ESIIEFGPGLTVLTGETGAGKTMVVTSLGLLLGARS----- 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADIS--------------IKLETRDDRSVRCLQIN 106
            A + R G+             +  A +               ++    + RS   +   
Sbjct: 51  DAGLVREGADRAVVEGVFEVAADHPATLRATEAGGEVDDTLVLVRTVQTEGRSRAHVGGR 110

Query: 107 DVVIRVVDELNKHLRIS--------WLVP----SMDRIFSGLSMERRRFLDRMVFAIDPR 154
              + V+ EL +HL              P     +   F G  +   R     V+A    
Sbjct: 111 SAPVGVLAELGEHLVAVHGQADQWRLRRPEEHRELLDAFGGGPLAGARTAYNEVYAAHAS 170

Query: 155 HRRRMIDFERLMRGRNR---LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
               +       R R +   LL  G    +    +  + A+L  +I   R+     L   
Sbjct: 171 ALAELESLRAAARERAQELDLLHRGLERIAEVEPLAGEDADL--RIEDERLAHAEELRRG 228

Query: 212 IMEYV 216
             E  
Sbjct: 229 SSEAH 233


>gi|313200887|ref|YP_004039545.1| ATP-dependent endonuclease [Methylovorus sp. MP688]
 gi|312440203|gb|ADQ84309.1| ATP-dependent endonuclease [Methylovorus sp. MP688]
          Length = 770

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +    +  FR      +      +IFVG N  GKT+  +AI     G
Sbjct: 1  MHLHSYRLRNFRRLKDAHIELADDISIFVGSNNSGKTSATQAIHAFVTG 49


>gi|307181546|gb|EFN69108.1| Structural maintenance of chromosomes protein 1A [Camponotus
           floridanus]
          Length = 955

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYAD 63
           +K + +  F+++   + +      T  +G NG GK+NI++AISF+        R     +
Sbjct: 5   LKAITLFNFKSFRGKVVIDHFHPFTAIIGPNGSGKSNIMDAISFVLGETLSILRVKHLNE 64

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           +     IG P+    +  +  M+   + S     +        +I++ ++  
Sbjct: 65  LVHGAFIGEPAAEGAYVTIILMKDQIEKSYTRTIQG--KDNQYKIDNKIVTR 114


>gi|302653128|ref|XP_003018395.1| DNA repair protein Rad18, putative [Trichophyton verrucosum HKI
           0517]
 gi|291182038|gb|EFE37750.1| DNA repair protein Rad18, putative [Trichophyton verrucosum HKI
           0517]
          Length = 1088

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 94/308 (30%), Gaps = 65/308 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++    G+     R  S   
Sbjct: 100 IERVDCYNFMCHEHFSVELGPLINFIVGKNGSGKSAILTALTLCLGGKASATNRGQSLKS 159

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-----INDVVIRVVDELNK 118
             + G        A +    G + I  +  TR   S   L+     I       +D +  
Sbjct: 160 FVKEGKEG---DGAYLPDTYGESIIVERHFTRSGSSGFRLKSKSGAIISTRRADLDCITD 216

Query: 119 HLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR----------RR 158
           +  +    P        +   + +    E+ +F      +  +D  +            +
Sbjct: 217 YFALQMDNPMNVLSQDMARQFLSTSSPAEKYKFFMKGVQLEQLDHDYHMMEESIDQLQAK 276

Query: 159 MIDFERLMR----GRN----------------RLLTEGYFDSSWCSSIEAQ--------M 190
           ++D +  ++     RN                  +      ++W    E +        +
Sbjct: 277 LLDHQEQLKVLESNRNNARARLAQSDRHESLRARIRHLRSQTAWIQVEEQERPQIRDSLV 336

Query: 191 AELGVKINIARVEMINALSSL----IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           AE+      AR+E + + +           Q+ N     + +        D S   +K+ 
Sbjct: 337 AEIAE--TRARIEQLESEAENRDAEFQAADQEVNEAREAVRVAKEAQAAIDDSKAEIKQR 394

Query: 247 YAKKLFDG 254
           Y + + + 
Sbjct: 395 YDEAVKER 402


>gi|289167862|ref|YP_003446131.1| DNA repair protein RecN [Streptococcus mitis B6]
 gi|288907429|emb|CBJ22266.1| DNA repair protein RecN [Streptococcus mitis B6]
          Length = 555

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 23/207 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G+E   +I I+ E          ++N  ++ + 
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLEMGDEIIIRREI-LQNGRSISRVNGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+               F D   + +   ++     + ++ +  
Sbjct: 116 VLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDVAFWDLKETYQTSFDAYRKMRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVK 196
             +        +    +E QMAE+   
Sbjct: 176 LEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|223993377|ref|XP_002286372.1| smc-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220977687|gb|EED96013.1| smc-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 1204

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRASYAD 63
           I  + +  F  +  L +          G NG GK+ IL AI         R  R  +  D
Sbjct: 102 INEVYVENFMCHRKLSVKLCRNVNFIHGQNGSGKSAILAAIQVCLGAGARRTHRARNLKD 161

Query: 64  VTRIGSPS 71
           + R  + +
Sbjct: 162 LVRKEAGA 169


>gi|193215422|ref|YP_001996621.1| SMC domain-containing protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193088899|gb|ACF14174.1| SMC domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 874

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 22/130 (16%)

Query: 8   KFLNISEFRNYAS--LRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           K L +  F +Y      L FD       VG NG GK++++EAI +   G G  RA  A++
Sbjct: 4   KKLRLKNFLSYGEPMQELDFDRFHVACLVGSNGSGKSSLIEAIGWCVWGEG--RAKTAEL 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G+    + F  V                +D   + ++I         E  + L    
Sbjct: 62  IHEGATEARTEFEFV---------------ANDAIYKIVRIAKKKKNHRAE--EQLEFQV 104

Query: 125 LVPSMDRIFS 134
             P   R  S
Sbjct: 105 FSPETARFVS 114


>gi|197117352|ref|YP_002137779.1| chromosome segregation ATPase SMC [Geobacter bemidjiensis Bem]
 gi|197086712|gb|ACH37983.1| chromosome segregation ATPase SMC [Geobacter bemidjiensis Bem]
          Length = 1176

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 136/404 (33%), Gaps = 80/404 (19%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +KIK L I  F+++     L F+   T  VG NG GK+N+++AI ++      +  R  S
Sbjct: 1   MKIKRLEIHGFKSFQDKAVLDFNQPITGVVGPNGCGKSNVVDAIRWVMGEQSAKNLRGKS 60

Query: 61  YADVTRIGSPSFFSTF--ARVEGMEGLADISIKLETRDDRSVRCLQ-----------IND 107
             D+   G   F      A V       D  +  +  +   ++  +           +N 
Sbjct: 61  MEDII-FGGTEFRKPLGMAEVSLFFSTEDGRVPAKYLNFSEIQVTRRLYRDGDSDYLLNK 119

Query: 108 VVIRVVD--EL-----NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
              R++D  EL           S +      +      E RRFL      +     R+++
Sbjct: 120 TPCRLLDIAELFMDTGIGAKAYSIIEQGKIGMILHAKPEERRFLIEEAAGVTKFKARKVV 179

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQM------AELGVKINIARVEM---------- 204
             +++   R  LL  G       S I+ QM      A+   +    R+E+          
Sbjct: 180 AMKKMEATRQNLLRLG----DIISEIKRQMNGLQRQAKKAERFREIRLELKEIELLFAAK 235

Query: 205 ---------------INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
                          I  L S +++   + N   + +        + +++  A +EE  +
Sbjct: 236 GYGSVQKERQGLEREIAELESKLVDITARLNEAELSIEGKRITLLETERALTAAQEEIFR 295

Query: 250 ---KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH-GSTGEQKVVLVGIFLAHAR 305
              +L  G       RR L    R     +   + +      S  E    LV +    A 
Sbjct: 296 WKSELQGGENKLEFQRRELANQERHGARFEEELQGLRDQLAASERE----LVSLETQQAS 351

Query: 306 LISNTTGFAPIL-----LLDEISA-------HLDEDKRNALFRI 337
            +      +  L     LL+E++A        LDE +R     +
Sbjct: 352 FLEEHARESEALEHREALLEEMAASEAGVTRELDEARRAMFAAL 395


>gi|50553286|ref|XP_504054.1| YALI0E17193p [Yarrowia lipolytica]
 gi|49649923|emb|CAG79647.1| YALI0E17193p [Yarrowia lipolytica]
          Length = 1117

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 81/263 (30%), Gaps = 27/263 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRRAS 60
           I  + +    +Y    + F       +G NG GK+ +L AI           G+      
Sbjct: 72  ILQIYMKNVMSYDECLVNFGPTLNFVIGPNGSGKSTMLAAICLAFAAPITCMGKA--ALK 129

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI------RVVD 114
              + +  +         V+   G+ D++ K     D       IN              
Sbjct: 130 AQQLIKS-TKDALEVRVVVKNFAGMPDLTFKRTLTRDEKQGKFFINGKSATMKEVRATAR 188

Query: 115 EL-NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           EL  + + ++  +P   R+    +M  +  L  +    D  ++     ++ L+       
Sbjct: 189 ELDIQIVSMTRFLPQD-RVKDFTTMSPKELL--ITTMEDVGYKNMRSHYDSLVNQ----Q 241

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
                D          +A+L    +  R ++ + ++ L     Q+E    ++        
Sbjct: 242 EHSADDEHRLQLATDALADL----DRRRNDLTDKIAQLEEREKQEEMVKKLEKVAVYSKG 297

Query: 234 GKFDQSFCALKEEYAKKLFDGRK 256
               Q    +K E A+     + 
Sbjct: 298 IFLKQETERIKLEVAQLNAANKD 320


>gi|13541638|ref|NP_111326.1| chromosome segregation ATPase [Thermoplasma volcanium GSS1]
 gi|14325037|dbj|BAB59963.1| chromosome scaffold protein [smc1] [Thermoplasma volcanium GSS1]
          Length = 1141

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 14/154 (9%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-F--RRASYA 62
           I+ +    F+++     + F     +  G NG GK+NI + + F+   +     R    +
Sbjct: 5   IERIEAYNFKSFRKKKTIYFSRGLNVISGPNGSGKSNIGDMLLFVLGTKSIHSVRADKLS 64

Query: 63  DVTRIGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIRV------VDE 115
           D+    S +        +  EG + +IS +L   D+       +N    R       +  
Sbjct: 65  DLISKDSGNTCYVIVTFKNDEGKSLEISRRLVIEDEPKSY-YYVNGTKARQSDVEDALSA 123

Query: 116 LNKHLRISWLVPS-MDRIFSG-LSMERRRFLDRM 147
              +      V       F G   +ERR+ ++R+
Sbjct: 124 FGINFGTYSFVLQGDINDFVGMSGVERRKLIERI 157


>gi|325837634|ref|ZP_08166481.1| chromosome segregation protein SMC [Turicibacter sp. HGF1]
 gi|325490936|gb|EGC93235.1| chromosome segregation protein SMC [Turicibacter sp. HGF1]
          Length = 1191

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 20/160 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K +    F+++A   +  F+   T  VG NG GK+NI ++I   L     +  R   
Sbjct: 1   MYLKRIETIGFKSFADKTVVEFERGVTAVVGPNGSGKSNISDSIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+      +F      ++       I    + +  R  R+      IN   +R
Sbjct: 61  MEDIIFAGTSTRKPLNFAEVTLVLDNSCQSLPIDYDEVSITRRVYRTGDSEYLINKQKVR 120

Query: 112 VVDEL-------NKHLRISWLVPSMDRIFSGLSMERRRFL 144
           + D +         H  +S +     +      +E RR +
Sbjct: 121 LKDVIDLIMDSGIGHDSLSIISQDKVKAIVEARVEDRRVI 160


>gi|224023957|ref|ZP_03642323.1| hypothetical protein BACCOPRO_00674 [Bacteroides coprophilus DSM
          18228]
 gi|224017179|gb|EEF75191.1| hypothetical protein BACCOPRO_00674 [Bacteroides coprophilus DSM
          18228]
          Length = 444

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +    + I  FR Y    + F     + +GDN VGKT++L A + 
Sbjct: 1  MH--DITIKNFRCYEEKSMEFRRGVNLLIGDNSVGKTSLLHACNL 43


>gi|220906702|ref|YP_002482013.1| DNA repair protein RecN [Cyanothece sp. PCC 7425]
 gi|219863313|gb|ACL43652.1| DNA repair protein RecN [Cyanothece sp. PCC 7425]
          Length = 595

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 28/208 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG----RGFRRASYA 62
           +  L I  F     L L F     +  G+ G GK+ IL+AI  +  G    R  R     
Sbjct: 2   LISLRIENFALIDRLELEFAPGLNVLTGETGAGKSIILDAIDIVLGGKVSSRVLRTGRER 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISI----------KLETRDDRSVRCLQINDVVIRV 112
            +      + F     +       +I +          ++           ++N VV+  
Sbjct: 62  ALL----EASFKLTRELSDWLSSQEIDLLEDATLLCSREISQTVGGLRSRSRLNGVVVNR 117

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-------AIDPRHRRRMIDFERL 165
               +   R+  +      +    +  +R++LDR                  R    ++ 
Sbjct: 118 QQLEDLRDRLVAITAQGQAVQLLQATTQRQWLDRFGGDTLLAQRQHVTSAFSRFQQTQQA 177

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +                   +E Q+ EL
Sbjct: 178 LEQ---YWRTERQRLQQLDVLEYQLREL 202


>gi|296333420|ref|ZP_06875873.1| factor for double strand breaks DNA repair and genetic
           recombination [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675074|ref|YP_003866746.1| double strand breaks DNA repair and genetic recombination protein
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296149618|gb|EFG90514.1| factor for double strand breaks DNA repair and genetic
           recombination [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413318|gb|ADM38437.1| factor for double strand breaks DNA repair and genetic
           recombination [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 576

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 51/254 (20%), Positives = 93/254 (36%), Gaps = 37/254 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F+   T+  G+ G GK+ I++AIS L  GRG      ++  R
Sbjct: 2   LAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRG-----SSEFVR 56

Query: 67  IGSPSFFSTFARVEGM--------------EGLADIS---IKLETRDDRSVRCL-QINDV 108
            G      T A +EG+              E   D+S   I +      S + + ++N  
Sbjct: 57  YGE-----TKAELEGLFLLESGHPVFDVCTEQGIDVSDEMIVMRRDISTSGKSVCRVNGK 111

Query: 109 --VIRVVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFER 164
              I  + E+ + L           +    +  R   +F    V +    ++     + +
Sbjct: 112 LVTIASLREIGRLLLDIHGQHDNQLLMEDENHLRLLDKFAGAEVESALQAYQEGYQRYMK 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L++   +L       +     I+ Q+     +I  A++E+      L  E  Q  NF  I
Sbjct: 172 LLKKLKQLSESEQEMAHRLDLIQFQL----EEIESAKLELNED-EQLQEERQQISNFEKI 226

Query: 225 KLSLTGFLDGKFDQ 238
             SL    +    +
Sbjct: 227 YGSLQNAYNALRSE 240


>gi|292670932|ref|ZP_06604358.1| chromosome segregation protein Smc [Selenomonas noxia ATCC 43541]
 gi|292647553|gb|EFF65525.1| chromosome segregation protein Smc [Selenomonas noxia ATCC 43541]
          Length = 1187

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 97/303 (32%), Gaps = 52/303 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++K L    F+++   + + FD   T  VG NG GK+NI +A+ ++      R  R   
Sbjct: 1   MQLKRLEAYGFKSFAERIVVQFDRGITAVVGPNGSGKSNITDAVRWVLGEQNIRMLRGLR 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIR 111
             D+   GS      S        +  +    I         R  R     + +ND   R
Sbjct: 61  SEDIIFSGSAARRALSVAEVVLVFDNRDKTLPIDYDEVVVKRRLYRNGDSEIYLNDSRCR 120

Query: 112 VVDEL-------NKHLRISWL-VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D           H  +S +    ++ I      +RR F +             +  + 
Sbjct: 121 IKDIYQLFADTGIGHDGMSIIGQNRLNDILDSRPEDRRVFFEETAG---------ITKYR 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
              +   R L E   D          +  LG  +   R E +  LS    + +Q      
Sbjct: 172 TRKQEALRKLRENEGD----------LVRLGDIMCAHREE-LEPLSIQAEKTMQFRKLDE 220

Query: 224 IK-----LSLTGFLD------GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
            +     ++L    D          Q+    ++E A+++ +    +             D
Sbjct: 221 ERRQYLLVALVQQYDQLIREQESITQALNVHRDEEAREIRERMDAEEKRGAIEENIASID 280

Query: 273 LIV 275
           L +
Sbjct: 281 LRL 283


>gi|290975093|ref|XP_002670278.1| structural maintenance of chromosome 3 [Naegleria gruberi]
 gi|284083835|gb|EFC37534.1| structural maintenance of chromosome 3 [Naegleria gruberi]
          Length = 936

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 5  IKIKFLNISEFRNYASLRL---VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y         F A   I VG NG GK+N   AISF
Sbjct: 1  MHIKSVTIQGFKSYRDQTFTSQEFSASQNIIVGRNGSGKSNFFSAISF 48



 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 19/199 (9%)

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
           + +  +E+    +   L +     S   +I   +  L  + + A V     +     E  
Sbjct: 688 KALDQYEQFSNQKEEFLEKKSELDSSAKAINELIQVLDKRKDEAIVRTFKQVQKNFQEIF 747

Query: 217 QKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
           Q      H  LS+        D+     ++E AK++     +         G    D   
Sbjct: 748 QNLVPGGHASLSMKYR--NGEDEEEEEEEDEEAKEVEQYAGVSIKVSFMSSGDSEEDQSY 805

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                       S G++ +V + +  A           AP  L DEI A LD   R ++ 
Sbjct: 806 HLM------QQLSGGQKSLVALCLIFA-----IQRCDPAPFYLFDEIDAALDPAYRTSVA 854

Query: 336 RIVTDIGS----QIFMTGT 350
            ++  + +    Q F+T T
Sbjct: 855 NMIDTLSTKEKIQ-FITAT 872


>gi|239636287|ref|ZP_04677289.1| chromosome segregation protein SMC [Staphylococcus warneri L37603]
 gi|239597642|gb|EEQ80137.1| chromosome segregation protein SMC [Staphylococcus warneri L37603]
          Length = 1189

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 16/118 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2   VYLKSIDAVGFKSFADHTDVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
             D+   G+             +  A++ +KL    D   + LQI+  V+ V   L +
Sbjct: 62  MEDIIFSGAEH--------RKPQNFAEVKLKL----DNHSKKLQIDAEVVEVTRRLYR 107



 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 12/160 (7%)

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLFDG 254
               R   +N   + + E   K     I   +   ++ +F ++F A++  ++   K+LF G
Sbjct: 997  LNERYTFLNEQRTDLRE--AKSTLEQIINEMDKEVEDRFKETFHAVQSHFSDVFKQLFGG 1054

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
             + +             D+IV    K +  ++  S GE+ +  + +  A  ++       
Sbjct: 1055 GQAELQLTEDDYLAAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKV-----RS 1109

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDK 352
            AP ++LDE+ A LDE       + + ++  Q  F+  T +
Sbjct: 1110 APFVILDEVEAALDEANVIRYAQYLNELSDQTQFIVITHR 1149


>gi|166365891|ref|YP_001658164.1| ATPase [Microcystis aeruginosa NIES-843]
 gi|166088264|dbj|BAG02972.1| predicted ATPase [Microcystis aeruginosa NIES-843]
          Length = 395

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 61/375 (16%), Positives = 109/375 (29%), Gaps = 60/375 (16%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF-----RR 58
           +I+ L +  +R    L L      T+F+G NG GK+ I +  +FLS     G      RR
Sbjct: 8   RIENLRVQNYRALQDLELKSITPLTVFLGPNGSGKSTIFDVFAFLSECFTVGLKKAWDRR 67

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
             + ++   G   +     +         I+  L   +    R     + +        K
Sbjct: 68  GRFKELRTRGQEGYIIIELKYREKLASPLITYHLAINEAN-NRPYVAEEWLQWRQGAKGK 126

Query: 119 HLRISWLVPSMDRIFSGL---SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
             R          + SG      ++R           P         +     R   L  
Sbjct: 127 PYRFLDFKEGGGIVVSGENPKPKDKRISERLD----SPEFLAVSTLGQLAKHPRVSALRR 182

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
                                I    +  + A         Q E     +LS TG     
Sbjct: 183 --------------------FITSWYLSYLTA----DNTRTQPEAGAQERLSPTG---DN 215

Query: 236 FDQSFCALKEEYAKKLFD-----GRKMDSMSRRTLIGPHRSDLIVDYCD----KAITIAH 286
                  LKE++ ++L        R++  + +          L++   D    + I    
Sbjct: 216 LPNVIQYLKEDHPQRLESILQTLSRRIPRLEKVEASIMPNGQLLLQIKDAPFQEPILAKF 275

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI--VTDIGSQ 344
            S G  K+      LA+  ++ + +    +L ++E   HL       L          +Q
Sbjct: 276 ASDGTLKM------LAYLTILYDPS-PPQLLGIEEPENHLHPRLLPELAEECRAATASTQ 328

Query: 345 IFMTGTDKSVFDSLN 359
           + +T       D L 
Sbjct: 329 LMVTTHSPFFVDGLK 343


>gi|146421679|ref|XP_001486784.1| hypothetical protein PGUG_00161 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1082

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 4/111 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ L +  F  +    L F  Q    +G NG GK+ IL  IS     +     R  S   
Sbjct: 63  IEKLVLRNFMCHEFFELEFGPQLNFIIGRNGSGKSAILTGISVGLGAKAADTNRGTSMKK 122

Query: 64  VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
           + + G  +   S   + EG E     +       +R ++    N  +I+  
Sbjct: 123 LIKDGKNTARISITLKNEGPEAYKRSTFGSHIIIERVLQRQGTNQYLIKSA 173


>gi|332535841|ref|ZP_08411570.1| pathogenesis like protein [Pseudoalteromonas haloplanktis
          ANT/505]
 gi|332034770|gb|EGI71310.1| pathogenesis like protein [Pseudoalteromonas haloplanktis
          ANT/505]
          Length = 702

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 26/59 (44%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +KI  + I  FR      L  + + ++ +G N  GKT+IL A+         R  +  D
Sbjct: 1  MKISKIQIRNFRLLKDFSLDLEDELSLILGKNNTGKTSILTALDKFLNQSSRRSITLDD 59


>gi|330830509|ref|YP_004393461.1| hypothetical protein B565_2809 [Aeromonas veronii B565]
 gi|328805645|gb|AEB50844.1| hypothetical protein B565_2809 [Aeromonas veronii B565]
          Length = 489

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 49/143 (34%), Gaps = 8/143 (5%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +K + I  F++      +      T+  G N  GKT+IL+A+  L      +      + 
Sbjct: 2   LKSIKIENFKSIKDKADIRLAP-ITLIFGPNSSGKTSILQALGVLKQTYSGKPKGSRGLV 60

Query: 66  RIGSP---SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
             G       + +      +     ISI  +  +    +   ++    R +    +    
Sbjct: 61  TSGEIFDLGGYRSVIHEHEIFNSIRISICYDGLNVNKRQNEFVSLKEYRELSFQYQWYDE 120

Query: 123 SWLVPSMDRIFSGLSMERRRFLD 145
           S+     D I +     R RF++
Sbjct: 121 SFNYNEYDSILN---ELRMRFIE 140


>gi|255722149|ref|XP_002546009.1| hypothetical protein CTRG_00790 [Candida tropicalis MYA-3404]
 gi|240136498|gb|EER36051.1| hypothetical protein CTRG_00790 [Candida tropicalis MYA-3404]
          Length = 1073

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 3/120 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF-RRASYADV 64
           I+ + +  F  Y+           + +G NG GK+ ++ +I   L+      +R +   +
Sbjct: 26  IRNVKVWNFTTYSYTEFCLSPTLNMIIGPNGSGKSTLVASICIGLAGNITLIKRKNLKSM 85

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G  S       +E  EG + I +K E     S   +         V +L     I  
Sbjct: 86  IKTGHESAAVEI-TLENHEGKSPIVVKREFTAKESAWTINGQRSTETKVRKLRSEFNIQL 144


>gi|255102984|ref|ZP_05331961.1| hypothetical protein CdifQCD-6_19398 [Clostridium difficile
          QCD-63q42]
          Length = 419

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 25/48 (52%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +KI+ + I        L L F+    I  G NG+GKT ILE IS L
Sbjct: 25 DAMKIEKIEIKGIGGIKELSLRFNKGLNIICGANGIGKTTILEVISHL 72


>gi|219127758|ref|XP_002184096.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404327|gb|EEC44274.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1213

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          + I+ + I  F++YA   +V  FD       G NG GK+NIL+AI F   ++     R  
Sbjct: 1  MFIQEIVIDGFKSYARRTVVEGFDPHFNAITGLNGSGKSNILDAICFVLGITNLSQVRAG 60

Query: 60 SYADVT-RIGSPSFFSTFARV 79
          + +++  + G          +
Sbjct: 61 NLSELVYKQGQAGVNKATVTI 81


>gi|209946256|gb|ACI97359.1| SMC1 [Drosophila melanogaster]
          Length = 306

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|66531869|ref|XP_396284.2| PREDICTED: structural maintenance of chromosomes protein 2 [Apis
           mellifera]
          Length = 1177

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRL-VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++Y   + +  F+ +     G NG GK+NIL+AI F   +S     R  
Sbjct: 1   MYIKSMVLEGFKSYGKRIEINDFNKEFNAITGFNGSGKSNILDAICFVLGISNLGQVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+  + G          +            G E   +I +  +       + L IN 
Sbjct: 61  SLQDLVYKSGQAGIKKASVTITFDNRDRDSSPMGYEHHEEIIVTRQVVIGGKNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
             ++     +    +   V +   +    
Sbjct: 120 SNVQNKRVQDMFCSVQLNVNNPHFLIMQG 148


>gi|325928716|ref|ZP_08189886.1| DNA replication and repair protein RecN [Xanthomonas perforans
           91-118]
 gi|325540884|gb|EGD12456.1| DNA replication and repair protein RecN [Xanthomonas perforans
           91-118]
          Length = 554

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 93/267 (34%), Gaps = 37/267 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLADISIKLETR-------DDRSVRCLQINDVVI--RV 112
            G+        F   A   G+  LAD  +  E +                IN   +    
Sbjct: 57  HGAERAELSAEFQLPAEHPGLRWLADNELDDEAQCQLRRIIRADGGSRAWINGRPVTSSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRGR 169
           + EL   L           + +  S      LD   R     +   R+    ++ L+  R
Sbjct: 117 LAELASRLVEIHGQHEHQALMARHSQL--ALLDAYARNSAQREQV-RQASQRWQALLDER 173

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL-----------GVKINIARVEMINALSSLIMEYVQK 218
           + L  +G   S     +E Q+AEL            + +N  R     AL        Q+
Sbjct: 174 DALSAQGDV-SDRIGFLEHQLAELEREDLDPAAIAALDVNHRRQAHATALIGACDSVAQQ 232

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKE 245
            N      +L    D + D S  A  E
Sbjct: 233 LNGDDGASALGLLQDSRHDLSRVAEHE 259


>gi|325917959|ref|ZP_08180128.1| RecF/RecN/SMC N-terminal domain-containing protein [Xanthomonas
          vesicatoria ATCC 35937]
 gi|325535816|gb|EGD07643.1| RecF/RecN/SMC N-terminal domain-containing protein [Xanthomonas
          vesicatoria ATCC 35937]
          Length = 111

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1  MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61 YADVTRIGSPSFF-STFARVEGMEGLADISIKLE 93
            DV   GS +    + A VE +   +D +I  E
Sbjct: 61 LTDVIFSGSSARKPVSQATVELIFDNSDHTITGE 94


>gi|322827600|gb|EFZ31711.1| structural maintenance of chromosome 3 protein, putative
           [Trypanosoma cruzi]
          Length = 959

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 5   IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRAS 60
           + IK + IS FR+Y      +    ++ + VG NG GK+N   A+ F+   +      A 
Sbjct: 1   MHIKNILISGFRSYRDQSFQVDLSPKNNVIVGKNGSGKSNFFAAVQFVLSEKYTTLTAAE 60

Query: 61  YADVTRIGSPS-FFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             ++   GS     S F  +  +  +G   I  + E ++ R  R L +     RV D 
Sbjct: 61  RKELFHAGSGRPALSIFVEIIFDNSDGRLIIPGRAEEKEVRIRRTLGLKQDEFRVNDR 118


>gi|119513501|ref|ZP_01632523.1| DNA repair protein RecN [Nodularia spumigena CCY9414]
 gi|119461840|gb|EAW42855.1| DNA repair protein RecN [Nodularia spumigena CCY9414]
          Length = 575

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 65/206 (31%), Gaps = 24/206 (11%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I  F     L L F A   +  G+ G GK+ IL+AI     G+       + V R G+
Sbjct: 5   LRIQNFALIDQLELEFGAGLNVLTGETGAGKSIILDAIDAALGGK-----VSSRVIRTGT 59

Query: 70  P--------------SFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVD 114
                          + +     ++ +E     +S ++           ++N V++    
Sbjct: 60  NRSMVEATFTSNPALTAWLIEQEIDLIEDNCVIVSREITATASNIRSRSRVNGVLVNRQI 119

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLD----RMVFAIDPRHRRRMIDFERLMRGRN 170
                 R+  +      +  G S + R +LD      +             +++      
Sbjct: 120 MGGLRDRLVEITAQGQTVQVGQSAQVREWLDVYGGDSLLQQRQIIATAFTAYQKAHLVLE 179

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVK 196
           +  T           +  Q+ ELG  
Sbjct: 180 KRRTSERERLQQLDLLTYQIQELGAA 205


>gi|116333609|ref|YP_795136.1| DNA repair ATPase [Lactobacillus brevis ATCC 367]
 gi|116098956|gb|ABJ64105.1| DNA repair ATPase [Lactobacillus brevis ATCC 367]
          Length = 564

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
          ++ L+I  F     L + F    T+  G+ G GK+ I++A+  L+ GRG     R  +  
Sbjct: 2  LQELSIKNFAIIDHLDVTFKNGMTVLTGETGAGKSIIIDAVGLLAGGRGSANFVRTGTDK 61

Query: 63 DVTR 66
           V +
Sbjct: 62 AVIQ 65


>gi|329122026|ref|ZP_08250635.1| hypothetical protein HMPREF9083_1097 [Dialister micraerophilus DSM
           19965]
 gi|327467078|gb|EGF12590.1| hypothetical protein HMPREF9083_1097 [Dialister micraerophilus DSM
           19965]
          Length = 424

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 21/158 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +K+  L +  F+++A    + F    T+ VG NG GK+NI +A+ ++      R  R   
Sbjct: 1   MKLLRLTMQGFKSFADKTTIEFSDGMTVIVGPNGCGKSNISDAVRWVLGEQNVRNLRGQK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS              ++  +G   +    + +  R  RS      IN    R
Sbjct: 61  SEDIIFSGSETRNTKQVAEVTMVLDNEDGKLPLQTAEVTISRRVFRSGESEFYINKRSCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERR 141
           + D         L K          +D++ +    ERR
Sbjct: 121 LKDIHELLANSGLGKGTLAIIGQNRVDQVLTAQPEERR 158


>gi|262164060|ref|ZP_06031799.1| hypothetical protein VMA_000501 [Vibrio mimicus VM223]
 gi|262027588|gb|EEY46254.1| hypothetical protein VMA_000501 [Vibrio mimicus VM223]
          Length = 768

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          ++  IK++F+ +S FR    ++L  D + TI VG N  GKT+IL A+  FL+ G  F
Sbjct: 10 VSKGIKLRFVELSNFRRLGKVQLNIDEKTTILVGANNSGKTSILAALRHFLADGSPF 66


>gi|229545191|ref|ZP_04433916.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
 gi|229309736|gb|EEN75723.1| conserved hypothetical protein [Enterococcus faecalis TX1322]
          Length = 264

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L I  FRN+  + +    +  +  G N VGKTN+L ++  L
Sbjct: 1  MKLSRLMIENFRNFEDVAINLSNK-NVVFGMNDVGKTNLLCSLRCL 45


>gi|227524624|ref|ZP_03954673.1| DNA repair protein RecN [Lactobacillus hilgardii ATCC 8290]
 gi|227088108|gb|EEI23420.1| DNA repair protein RecN [Lactobacillus hilgardii ATCC 8290]
          Length = 564

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 71/196 (36%), Gaps = 19/196 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF---RRASYA 62
           +  L+I++F     L + F +  T+  G+ G GK+ I++A+  L  GR      R  +  
Sbjct: 2   LLELSITDFAIIEHLDIEFQSGMTVLTGETGAGKSIIIDAVGLLVGGRGSHDLIRTGAKK 61

Query: 63  DVTR------IGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRC--LQINDVVIRVV 113
            V +        +P++       ++  +G   I  ++      S R   + IN   +R +
Sbjct: 62  SVIQGNFILSDDNPTYEVLDELGIDHSDGNVIIEREIFASGRNSCRVNGMMINIATLRRI 121

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRMIDFERLMRGRNRL 172
            E    ++          +           LD      I P   +   D+++ ++ R   
Sbjct: 122 GETMVDIQGQ---NEHQELMK--PERHIELLDDFAEDTIQPVLVKYQKDYDQFVKLRAIN 176

Query: 173 LTEGYFDSSWCSSIEA 188
             +   +  W   ++ 
Sbjct: 177 EKKHQNEKEWAQRVDM 192


>gi|188577111|ref|YP_001914040.1| DNA repair protein RecN [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521563|gb|ACD59508.1| DNA repair protein RecN [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 554

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 95/268 (35%), Gaps = 39/268 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LRHLSIKDFAVVRATELEFGPGMTVVSGETGTGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLADISIKLE--------TRDDRSVRCLQINDVVI--R 111
            G+        F   A   G+  LAD  +  E         R D   R   IN   +   
Sbjct: 57  HGADRAELSAEFQLPAEHPGLRWLADNELDDEAQCQLRRIIRADGGSRA-WINGRPVTSS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168
            + EL   L           + +  S      LD   R     D   R+    ++ L+  
Sbjct: 116 QLAELASRLVEIHGQHEHQALMARHSQL--ALLDAYARNSAQRDQV-RQASQRWQALLDE 172

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL-----------GVKINIARVEMINALSSLIMEYVQ 217
           R+ L  +G   S     +E Q+AEL            + +N  R     AL        Q
Sbjct: 173 RDTLSAQGDV-SDRIGFLEHQLAELEREDLDPAAIAALDVNHRRQAHATALIGTCDSVAQ 231

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKE 245
           + N      +L    D + D +  A  E
Sbjct: 232 QLNGDEGASALGLLQDSRHDIAHVAEHE 259


>gi|170048005|ref|XP_001851491.1| structural maintenance of chromosomes smc2 [Culex quinquefasciatus]
 gi|167870242|gb|EDS33625.1| structural maintenance of chromosomes smc2 [Culex quinquefasciatus]
          Length = 1178

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 47/232 (20%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + I  F++Y     +  FD +     G NG GK+NIL++I F   +S     R  
Sbjct: 1   MYIKSIIIDGFKSYGKRTEVHGFDPEFNAITGLNGTGKSNILDSICFVLGISNLVHVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++  + G          +            G E   +ISI  +       + L IN 
Sbjct: 61  SLQELVYKSGQAGVTKATVTLVFDNTDKDQCPLGYEKCNEISITRQIVVGGKNKYL-ING 119

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
             +  + V +L                          F    +   +P          ++
Sbjct: 120 KTVQNKKVQDL--------------------------FCSVQLNVNNPNFLIMQGRITKV 153

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
           +  + + +     +++  S  EA+  E  +K+   +   +N L +++ E ++
Sbjct: 154 LNMKPQEILSMIEEAAGTSVYEAK-REHSIKLIEKKDAKLNELYTVLREEIE 204


>gi|71276146|ref|ZP_00652426.1| DNA repair protein RecN [Xylella fastidiosa Dixon]
 gi|71900373|ref|ZP_00682507.1| DNA repair protein RecN [Xylella fastidiosa Ann-1]
 gi|170730627|ref|YP_001776060.1| recombination protein N [Xylella fastidiosa M12]
 gi|71163064|gb|EAO12786.1| DNA repair protein RecN [Xylella fastidiosa Dixon]
 gi|71729876|gb|EAO31973.1| DNA repair protein RecN [Xylella fastidiosa Ann-1]
 gi|167965420|gb|ACA12430.1| recombination protein N [Xylella fastidiosa M12]
          Length = 557

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 21/115 (18%)

Query: 7   IKFLNISEF---RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++ L I +F   RN     L F    T+  G+ G GK+ I++A+ FLS  R     + + 
Sbjct: 2   LRHLTIKDFAVVRNI---ELEFGPGMTVVSGETGAGKSLIIDALGFLSGLR-----ADSS 53

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           V R G+          E  E  A+  I +       +R ++++D     +  + +
Sbjct: 54  VVRHGA----------ERAELSAEFDITIHHPARVWLRNVELDDADQCQLRRIIR 98


>gi|327402040|ref|YP_004342878.1| DNA repair protein RecN [Fluviicola taffensis DSM 16823]
 gi|327317548|gb|AEA42040.1| DNA repair protein RecN [Fluviicola taffensis DSM 16823]
          Length = 548

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/245 (17%), Positives = 88/245 (35%), Gaps = 31/245 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  F     + L F     +  G+ G GK+ +L A++ +   R         V R
Sbjct: 2   LKSLSVQNFALIEHVSLQFHDGLHVITGETGSGKSILLGALNLILGERS-----DFSVIR 56

Query: 67  -----------IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VV 113
                            F  +   E ++  ++  I+ E       R   IND  ++   +
Sbjct: 57  NPEKKTVVEAVFDLNESFKNWFIQEDIDWESETVIRREITSQGKSRSF-INDTPVQLTQL 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR---GRN 170
            EL + L   ++    + +    S  +   LD     ++   +   ++++++ R    RN
Sbjct: 116 KELTEQL--VYIHSQHETLEIKKSKFQFDLLDSFGDCLELA-QEVSVNYQKIQRLKGERN 172

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQKENFPHIKLSL 228
           +L +           I+ Q+     +I    +E +N   L     +  Q +N      S+
Sbjct: 173 QLASAQTNHLQELDYIQFQL----NEIRGLDLESVNYEQLEQDFNKLSQLDNLKEAYSSV 228

Query: 229 TGFLD 233
              +D
Sbjct: 229 INAID 233


>gi|237668952|ref|ZP_04528936.1| chromosome segregation protein SMC [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237657300|gb|EEP54856.1| chromosome segregation protein SMC [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 1187

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 97/284 (34%), Gaps = 46/284 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L I  F+++A    L F    T  VG NG GK+NI +A+ ++   +     R   
Sbjct: 1   MFLKSLEIRGFKSFADKTELKFKKGVTAVVGPNGSGKSNISDAVRWVLGEQSIKVLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +          T   R  R       IN+   R
Sbjct: 61  MEDVIFAGTQFRKPVGLAQVSLTLDNSDEQLATEYNEVTVSRRIFRSGESEYLINNNKCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          ++ I SG   ERR  L+                  
Sbjct: 121 LKDVTNLFMDTGIGKEGYSLIGQGKIEAILSGKPEERRALLEEAAG-------------- 166

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ----KE 219
            +++ +NR   E        S+ +  +  +   I     E I  L     + ++     +
Sbjct: 167 -IVKFKNR--KEEAEKK--LSNTDDNLVRI-NDILSTYEERIEPLRIEREKAIEFKELSD 220

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSR 262
           N    ++SL        DQ     KEE  K++    +K +S+++
Sbjct: 221 NLKRKEVSLIVHTIQIMDQELRVFKEELNKRIEGINKKRESIAK 264


>gi|182417241|ref|ZP_02948594.1| chromosome segregation protein SMC [Clostridium butyricum 5521]
 gi|182378887|gb|EDT76400.1| chromosome segregation protein SMC [Clostridium butyricum 5521]
          Length = 1187

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 97/284 (34%), Gaps = 46/284 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L I  F+++A    L F    T  VG NG GK+NI +A+ ++   +     R   
Sbjct: 1   MFLKSLEIRGFKSFADKTELKFKKGVTAVVGPNGSGKSNISDAVRWVLGEQSIKVLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +          T   R  R       IN+   R
Sbjct: 61  MEDVIFAGTQFRKPVGLAQVSLTLDNSDEQLATEYNEVTVSRRIFRSGESEYLINNNKCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          ++ I SG   ERR  L+                  
Sbjct: 121 LKDVTNLFMDTGIGKEGYSLIGQGKIEAILSGKPEERRALLEEAAG-------------- 166

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ----KE 219
            +++ +NR   E        S+ +  +  +   I     E I  L     + ++     +
Sbjct: 167 -IVKFKNR--KEEAEKK--LSNTDDNLVRI-NDILSTYEERIEPLRIEREKAIEFKELSD 220

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSR 262
           N    ++SL        DQ     KEE  K++    +K +S+++
Sbjct: 221 NLKRKEVSLIVHTIQIMDQELRVFKEELNKRIEGINKKRESIAK 264


>gi|126735393|ref|ZP_01751139.1| DNA repair protein RecN [Roseobacter sp. CCS2]
 gi|126715948|gb|EBA12813.1| DNA repair protein RecN [Roseobacter sp. CCS2]
          Length = 541

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/226 (19%), Positives = 76/226 (33%), Gaps = 44/226 (19%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFST-- 75
              L L F     +  G+ G GK+ +L+A+ F+   RG      A++ R G+     T  
Sbjct: 4   IDRLELAFQPGLNVLTGETGAGKSILLDALGFVLGWRG-----RAELVRQGAEQGEVTAW 58

Query: 76  ---------FARVEGMEGLADISIKLETRDDRSVRC------LQINDVVIRVVDE----- 115
                    FA +E     AD  + L   + R  R        +++  V+R + E     
Sbjct: 59  FELPPGHPGFAVLEEAGIGADDELILRRVNTRDGRKTAWINDRRVSGEVLRALSETLVEL 118

Query: 116 LNKHLRISWLVP-------SMDRIFSGL-SMERRRFLDRMVFAIDPRHRRRMIDFERL-- 165
             +H     L P              G     R  +        D +     I   R+  
Sbjct: 119 HGQHDDRGLLNPRGHRQMLDSYAALEGAVDKTRTSWRALSASQRDLQSAETKIAEARVEE 178

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQ--MAELGVKINIARVEMINA 207
             +R     L     +    ++++AQ  + +   KI   R ++I A
Sbjct: 179 DYLRHAVAELDALAPEVGEEATLDAQRRLMQAAEKI---RTDIIKA 221


>gi|121703998|ref|XP_001270263.1| structural maintenance of chromosomes 5 smc5 [Aspergillus clavatus
           NRRL 1]
 gi|119398407|gb|EAW08837.1| structural maintenance of chromosomes 5 smc5 [Aspergillus clavatus
           NRRL 1]
          Length = 1185

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 75/261 (28%), Gaps = 17/261 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + + +F  Y S       +  + +G NG GK+ ++ AI   L  G     R     
Sbjct: 108 AIVRIKVIDFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDPG 167

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL------ 116
           +  + G           +G +   +  +    + + +     IN         L      
Sbjct: 168 EFVKHGCREATIEIELAKGPQLRRNPIVCRTIKREGNKSSFTINGKQASRSQVLKLAQSF 227

Query: 117 -NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
             +   +   +P                      A  P         ++L   + +L  +
Sbjct: 228 AIQIDNLCQFLPQDKVSEFAALTPIELLNSTQRAAAGPEMIEWHDSLKKLRAEQKKLQMD 287

Query: 176 GYFDSSWCSSIE--AQMAELGVKINIARVEM---INALSS--LIMEYVQKENFPHIKLSL 228
              D    S++E   +M    V+    R ++   I  L +   I  Y         K   
Sbjct: 288 NQSDKDLLSNLENRQEMQRGDVERMRQRAQIKRKIEMLEAVRPITRYTDGLAAYKEKQKE 347

Query: 229 TGFLDGKFDQSFCALKEEYAK 249
              L+ +++     L+     
Sbjct: 348 RQRLEREYEDLKAELEPALRA 368


>gi|116629413|ref|YP_814585.1| DNA repair ATPase [Lactobacillus gasseri ATCC 33323]
 gi|116094995|gb|ABJ60147.1| DNA replication and repair protein RecN [Lactobacillus gasseri ATCC
           33323]
          Length = 562

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 94/264 (35%), Gaps = 59/264 (22%)

Query: 5   IK--IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           ++  +  L+I  F    +L++ F  + T+ +G+ G GK+ I++A+S L   R     + +
Sbjct: 1   MRKMLVELDIKNFAIIKTLKVRFQEKMTVLIGETGAGKSIIIDAVSLLLGSR-----AQS 55

Query: 63  DVTRIGSP-----SFFSTFARVEGMEGLAD----------ISIKLETRDDRSVRCLQIND 107
           ++ R G         F    + E +E L +          + I  E    +    ++IN 
Sbjct: 56  EMIRSGEEKAVITGLFVLSEQKELIEKLYEKYGLPFEDDQLIISRELTH-KGRNVVRING 114

Query: 108 V--VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
               I V+ E+ K+L +     +  +I     M+  R +D +     P  +  + D+   
Sbjct: 115 QLTTINVLREIGKNL-VDIHGQNDQQIL----MDPERQIDLIDNYAKPEFKDELQDY--- 166

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
                        D      + +Q+                 L     E  QK++    +
Sbjct: 167 -----------AADFETWRHLTSQL---------------RKLREDAQEIAQKQDILEFQ 200

Query: 226 LSLTGFLDGKFDQSFCALKEEYAK 249
            +     D         L+EE+ +
Sbjct: 201 NNELESADLTDPDEDEKLEEEFNE 224


>gi|49481913|gb|AAT66668.1| DNA repair and genetic recombination protein [Bacillus sp. BGSC
           W9A62]
          Length = 573

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 101/329 (30%), Gaps = 56/329 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL + F+   T+  G+ G GK+ I++AI  L  GRG       +  R
Sbjct: 2   LAELSIKNFAIIESLSVSFEKGLTVLTGETGAGKSIIIDAIHLLIGGRG-----SVEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G        A +EG+           +  A++ I +                   ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLDDETHPCYDKCAEVGIDISEGMIVLRREIFATGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFE 163
            ++   V+ E+   L           +            F    +      +R     +E
Sbjct: 112 KLVTTAVLREIGSTLVDIHGQHEHQELMDPSRHLPLLDEFGGAEIAEALAEYRAVYEKYE 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEM--INALSSLI 212
           +L +   +L       +     +  Q+ E+           ++   +V++     +   +
Sbjct: 172 QLRKKLKKLNENEQQMAHRLDLLTFQLNEIQQANLQPNEDEQLMEEKVKIXNFQKIYEAL 231

Query: 213 MEYVQKENFPHIKLSLTG----------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
               +  +     L   G           +D    +++  +   Y        K+     
Sbjct: 232 KHSYEALSGEQRGLDWIGLAMSHLDDVASIDPALKEAYETIANSYYLLEDITYKLRDELE 291

Query: 263 RTLIGPHRSDLIVDYC--DKAITIAHGST 289
           +    P+R D I         +   +GST
Sbjct: 292 QLEYDPYRLDFIESRLSEINQLKRKYGST 320


>gi|332029385|gb|EGI69340.1| Structural maintenance of chromosomes protein 1A [Acromyrmex
          echinatior]
          Length = 1228

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
          +K + +  F++Y   L +      T  VG NG GK+N ++AISF+        R   +++
Sbjct: 5  LKHIEVDNFKSYKGKLIIGPLKSFTAVVGPNGSGKSNFMDAISFVMGEKTSSLRVKRFSE 64

Query: 64 VTR 66
          +  
Sbjct: 65 LIH 67


>gi|325288280|ref|YP_004264461.1| hypothetical protein Sgly_0086 [Syntrophobotulus glycolicus DSM
          8271]
 gi|324963681|gb|ADY54460.1| hypothetical protein Sgly_0086 [Syntrophobotulus glycolicus DSM
          8271]
          Length = 725

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +  L +  FRN+ S   +F+      +G+N  GK+N +  + FL
Sbjct: 1  MYLSGLQLINFRNFESACFIFNEGPNTIIGENDSGKSNAITGLRFL 46


>gi|254416524|ref|ZP_05030276.1| RecF/RecN/SMC N terminal domain protein [Microcoleus
          chthonoplastes PCC 7420]
 gi|196176728|gb|EDX71740.1| RecF/RecN/SMC N terminal domain protein [Microcoleus
          chthonoplastes PCC 7420]
          Length = 656

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR----- 58
          + +    +  ++++     L F     I VG N  GKT +LEA++        R      
Sbjct: 1  MFLAKFRLYNYKSFRDSGWLEFAPGINIIVGQNNSGKTALLEALTLNFKNVPHRSLRMLP 60

Query: 59 ASYADV 64
           S + +
Sbjct: 61 NSDSRL 66


>gi|166711483|ref|ZP_02242690.1| recombination protein N [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 554

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 94/277 (33%), Gaps = 36/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLADISIKLETR-------DDRSVRCLQINDVVI--RV 112
            G+        F   A   G+  LAD  +  E +                IN   +    
Sbjct: 57  HGADRAELSAEFQLPAEHPGLRWLADNELDDEAQCQLRRIIRADGGSRAWINGRPVTSSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRGR 169
           + EL   L           + +  S      LD   R     D   R+    ++ L+  R
Sbjct: 117 LAELASRLVEIHGQHEHQALMARHSQL--ALLDAYARNSAQRDQV-RQASQRWQALLDER 173

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM----INALSSLIMEYVQKENFPHIK 225
           + L  +G   S     +E Q+AEL       R ++    I AL                 
Sbjct: 174 DTLSAQGDV-SDRIGFLEHQLAEL------EREDLDPAAIAALDVNHRRQAHATALIGAC 226

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            S+   L+G    S   L ++    +    + +    
Sbjct: 227 DSVARQLNGDEGASALGLLQDSRHDIARVAEHEPRLG 263


>gi|157961512|ref|YP_001501546.1| chromosome segregation protein SMC [Shewanella pealeana ATCC
           700345]
 gi|157846512|gb|ABV87011.1| chromosome segregation protein SMC [Shewanella pealeana ATCC
           700345]
          Length = 1140

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 104/287 (36%), Gaps = 49/287 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++      +  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPLLNPLSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
            ADV   GS +            F +   R+ G      +I++K +   D        N 
Sbjct: 61  MADVIFNGSTARRPVSVASVELLFDNQDGRLAGQYSSYQEIAVKRQVSRDGDSNYFLNNQ 120

Query: 108 VVIRVVDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
              R   ++      + L P            R+      E R F++        R++ R
Sbjct: 121 KCRRK--DITDLFMGTGLGPRSYAIIEQGTISRLIESKPQELRVFIEEAAG--ISRYKER 176

Query: 159 MIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
             +   R+   R  L   G   S     +E ++AE        R            E  Q
Sbjct: 177 RRETENRIRHTRENLARLGDIRSELSKQLE-KLAEQAETAKKYR------------ELKQ 223

Query: 218 KENFPHIKLSLTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDS 259
            E     +LS++ F +      K D+    L+ +  + L   + ++ 
Sbjct: 224 AERKYDAELSVSRFDELQQQTAKLDEQLSKLELQQTELLAKKQTLEL 270



 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 67/234 (28%), Gaps = 49/234 (20%)

Query: 156  RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL--------GVKINIARVEMINA 207
               +      ++ R   L  G  DS     +  Q  ++        G K  + R + +  
Sbjct: 871  LEDLTQSSGTLKLRREGLK-GQIDSQQ-RVLIEQDVDVKQVLSSLDGSKTLVWRQKELER 928

Query: 208  LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS------ 261
            L + I            +  L        D     L    +      RK+D  +      
Sbjct: 929  LRAQIEHLGAINLAAIEEFDLQNQRKLYLDSQDEDLNAALSSLEEAIRKIDKDTKIRFKD 988

Query: 262  -------------------RRTLIGPHRSDLIVDY--------CDKAITIAHGSTGEQKV 294
                                   +     DL+             K  TI   S GE+ +
Sbjct: 989  TFDKVNADLGVLFPKVFGGGSAYLALTGDDLLETGVSIMARPPGKKNSTIHLLSGGEKAL 1048

Query: 295  VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FM 347
              + +  A  RL       AP  +LDE+ A LD+       R+V ++   + F+
Sbjct: 1049 TALSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVERFCRLVKEMSQSVQFI 1097


>gi|49481863|gb|AAT66643.1| DNA repair and genetic recombination protein [Geobacillus
          stearothermophilus]
          Length = 573

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL L FD   T+  G+ G GK+ I++AI  L  G G      ++  R
Sbjct: 2  LAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGXG-----SSEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G+       A +EG+
Sbjct: 57 FGAEK-----AEIEGL 67


>gi|15611414|ref|NP_223065.1| hypothetical protein jhp0346 [Helicobacter pylori J99]
 gi|4154870|gb|AAD05921.1| putative [Helicobacter pylori J99]
          Length = 381

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+ +   ++    +  I  G N  GK+N+LEA+ +L  G+ 
Sbjct: 2  IQSVRIKNFKTFKDTQIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49


>gi|332710639|ref|ZP_08430584.1| condensin subunit Smc [Lyngbya majuscula 3L]
 gi|332350694|gb|EGJ30289.1| condensin subunit Smc [Lyngbya majuscula 3L]
          Length = 1315

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + IK + +S F+++  + ++      T+  G NG GK+NIL+A+ F    +  +G R   
Sbjct: 2  VHIKRVELSRFKSFGGTTKIPLLEGFTVISGPNGSGKSNILDALLFCLGIASSKGMRAER 61

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLAD 87
            D+         +  A V     L+D
Sbjct: 62 LPDLVNHNKEHRGTVEASVTVTFDLSD 88


>gi|190343127|gb|ACE75525.1| HP1079 [Helicobacter pylori]
          Length = 381

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+ +   ++    +  I  G N  GK+N+LEA+ +L  G+ 
Sbjct: 2  IQSVRIKNFKTFKDTQIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49


>gi|190895614|ref|YP_001985906.1| hypothetical protein RHECIAT_PA0000299 [Rhizobium etli CIAT 652]
 gi|190699559|gb|ACE93643.1| hypothetical protein RHECIAT_PA0000299 [Rhizobium etli CIAT 652]
          Length = 648

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + +  ++I +FR     RL  +    + VG+N  GKT +++A+ +
Sbjct: 1  MYLSEVSIKDFRVLTDFRLRLNPGINLIVGENNSGKTALVDALRY 45


>gi|188991831|ref|YP_001903841.1| Hypothetical protein ybjD. [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167733591|emb|CAP51796.1| Hypothetical protein ybjD [Xanthomonas campestris pv. campestris]
          Length = 595

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 115/361 (31%), Gaps = 63/361 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           ++I  + +  F N++ + +       + VG+N VGK+N +  +   L PG   R      
Sbjct: 1   MRISRIRLINFANFSDIDIETGESI-VIVGENKVGKSNFIRGLQLILDPGLSER---DRQ 56

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +       +        G      + +   T D R                 L  HL   
Sbjct: 57  L--RLEHFWDGLGEDKVGETVEVSVDLTDFTDDPR-----------------LMAHLNDC 97

Query: 124 WLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            + P       G  M  R   RF  +      P     + D+E ++         G  D 
Sbjct: 98  VIDP-------GPPMVARLTYRFQPKTGLGHAP---ESLKDYEYVI--------FGGDDP 139

Query: 181 SW--------CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSLT- 229
                        I+ Q+A    +  +   R   +  L   +   +  +    I+  +  
Sbjct: 140 DMRIGGALRRMLPIDVQVALRDAEKDLASWRNSPLRPLIEDLAASLNDDTREEIQNQVDQ 199

Query: 230 GFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIGPHRSD-----LIVDYCDKAIT 283
              +    +   A  E  +++L     +  ++     + P R D     L +   +    
Sbjct: 200 AQRELAGHEEVVATAERISERLIAIAGEQHAVPMSLGLAPTRVDALLRSLRLLIDNGVRG 259

Query: 284 IAHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           +   S G   ++ + +  L   RL+S+        +++E  AHL    +  ++R     G
Sbjct: 260 VGDASLGTANLIFLALKSLELDRLVSDGERDHTFFVVEEPEAHLHPHVQRLIYRYFLGTG 319

Query: 343 S 343
           +
Sbjct: 320 A 320


>gi|123504794|ref|XP_001328834.1| SMC family, C-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121911782|gb|EAY16611.1| SMC family, C-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1202

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 15/141 (10%)

Query: 7   IKFLNISEFRNYASL-RL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           IK + +  F++YA L  +  F    T  VG NG GK+N+++A+ F+   +    R+    
Sbjct: 10  IKSIQVENFKSYAGLKDIGPFHPSFTSIVGPNGSGKSNVIDAMLFVFGYKARHMRQNVLK 69

Query: 63  DVTRIGSP-------SFFSTFARVEGMEGL--ADISIKLETRDDRSVRCLQINDVVIRVV 113
           D+    +        S    FA+  G E +  ++ SI  + R + +      +       
Sbjct: 70  DLIHKSTKYPNLTKASVKVIFAKYIGEEEVPNSEFSIGRDVRTNAASNYYWNDRS--SSY 127

Query: 114 DELNKHLRISWLVPSMDRIFS 134
            E+ K L+   +    +R   
Sbjct: 128 TEITKFLKSVGIDLDHNRFLI 148


>gi|307704837|ref|ZP_07641731.1| DNA repair protein RecN [Streptococcus mitis SK597]
 gi|307621613|gb|EFO00656.1| DNA repair protein RecN [Streptococcus mitis SK597]
          Length = 555

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 23/207 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G+E   +I I+ E          ++N  ++ + 
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLEFGDEIIIRREI-LQNGRSISRVNGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+               F D   + +   ++     + ++ +  
Sbjct: 116 VLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDTAFWDLKETYQTSFDAYRKMRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVK 196
             +        +    +E QMAE+   
Sbjct: 176 LEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|153010463|ref|YP_001371677.1| ATP-dependent endonuclease, OLD family protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562351|gb|ABS15848.1| ATP-dependent endonuclease, OLD family protein [Ochrobactrum
           anthropi ATCC 49188]
          Length = 681

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 58/170 (34%), Gaps = 40/170 (23%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63
           ++++   I  FR+   + +VF A  T  +G NG GK++IL+AI  F S  +         
Sbjct: 1   MQLERARIRNFRSLRDVEVVFGAH-TALIGGNGAGKSSILKAIEKFYSTTK--------- 50

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKL---------------ETRDDRSVRCLQINDV 108
                +  FF       G +    I I+L                 RD R V     +  
Sbjct: 51  --NCDADDFF-------GRDQGQPIEIELTFHQLSEQEAAAFEDRVRDGRLVVTRIFDGG 101

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
                    ++  +   +P    + +  +   +R     +   +P +   
Sbjct: 102 PSS-----GRYHGVVPQIPDFVAVRAHSAATPKRAAYNALRENNPLYADL 146


>gi|10954522|ref|NP_044161.1| hypothetical protein MJECL35 [Methanocaldococcus jannaschii DSM
          2661]
 gi|2496235|sp|Q60291|Y3535_METJA RecName: Full=Uncharacterized protein MJECL35
 gi|1522669|gb|AAC37104.1| hypothetical protein MJ_ECL35 [Methanocaldococcus jannaschii DSM
          2661]
          Length = 630

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI+ + I  FR+   L + F  + T+ +G N  GKT+IL  I  +
Sbjct: 1  MKIEQVKIENFRSIYDLTVEFG-KVTVLIGKNSSGKTSILNVIRII 45


>gi|307709370|ref|ZP_07645828.1| DNA repair protein RecN [Streptococcus mitis SK564]
 gi|307619953|gb|EFN99071.1| DNA repair protein RecN [Streptococcus mitis SK564]
          Length = 555

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 71/207 (34%), Gaps = 23/207 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G+E   +I I+ E          ++N  ++ + 
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLEMGDEIIIRREI-LQNGRSISRVNGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+               F D   + +   ++     + ++ +  
Sbjct: 116 VLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRKQV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVK 196
             +        +    +E QMAE+   
Sbjct: 176 LEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|238922221|ref|YP_002935735.1| hypothetical protein EUBELI_20456 [Eubacterium eligens ATCC
          27750]
 gi|238873893|gb|ACR73601.1| Hypothetical protein EUBELI_20456 [Eubacterium eligens ATCC
          27750]
          Length = 477

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 1  MTNR-IKIKFLNISEFRNYASLRLVFDAQ-------HTIFVGDNGVGKTNILEAISFL 50
          M +R ++I+ + I  F+N     L F+ +            G NG GKT +++AI  L
Sbjct: 12 MASRIVRIESITIDNFKNVTHGTLDFENKRKDYKASVLGLYGQNGSGKTALIDAIHLL 69


>gi|190343132|gb|ACE75529.1| HP1079 [Helicobacter pylori]
          Length = 381

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+ +   ++    +  I  G N  GK+N+LEA+ +L  G+ 
Sbjct: 2  IQSVRIRNFKTFKDTQIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49


>gi|210134563|ref|YP_002301002.1| hypothetical protein HPP12_0365 [Helicobacter pylori P12]
 gi|210132531|gb|ACJ07522.1| hypothetical protein HPP12_0365 [Helicobacter pylori P12]
          Length = 381

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+ +   ++    +  I  G N  GK+N+LEA+ +L  G+ 
Sbjct: 2  IQSVRIKNFKTFKDTQIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49


>gi|182677738|ref|YP_001831884.1| chromosome segregation protein SMC [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633621|gb|ACB94395.1| chromosome segregation protein SMC [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 1150

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L+IS F+ +      + +   T  VG NG GK+N++EA+ ++     F   R + 
Sbjct: 1   MKFTKLHISGFKTFVDATDFLIEPGLTGIVGPNGCGKSNLVEAMRWVMGENSFKAMRASG 60

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADIS----------IKLETRDDR-SVRCLQINDV 108
             DV   GS        A V  +   +D S          I++    +R S    +IN  
Sbjct: 61  MDDVIFSGSGERPARDQAEVSLVLDNSDGSAPVAFQDCPAIEVTRCIERASGSVYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + S     RRR L+
Sbjct: 121 EVRAKDVQLLFADASTGAKSPALVRQGQIGELISAKPQARRRILE 165



 Score = 39.5 bits (91), Expect = 0.98,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K   +   S GEQ +  + +  A        T  API +LDE+ A LD+        +
Sbjct: 1040 GKKPQVMTLLSGGEQALTALSLIFAIF-----LTNPAPICVLDEVDAPLDDANVERFCNL 1094

Query: 338  VTDIGSQI---FMTGTDKSV 354
            +  +  +    F+T T   +
Sbjct: 1095 LDHMSRKTETRFITITHNPI 1114


>gi|74095927|ref|NP_001027798.1| SMC3 protein [Takifugu rubripes]
 gi|54792531|emb|CAD58849.3| SMC3 protein [Takifugu rubripes]
          Length = 1217

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 87/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F  +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTVVDPFSPKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEDEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  S+R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSSKRETCG 250



 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 44/287 (15%), Positives = 94/287 (32%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E  + +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 908  EKEQNDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLTLKQL 965

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 966  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1025

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G  +G   Q       +  +      
Sbjct: 1026 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDAEGSQSQDEGESGVDSERGSSSQS 1085

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1086 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1135

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++    Q   T     + +S
Sbjct: 1136 PAPFYLFDEIDQALDAQHRKAVSDMIVELAGHAQFITTTFRPELLES 1182


>gi|75675058|ref|YP_317479.1| hypothetical protein Nwi_0863 [Nitrobacter winogradskyi Nb-255]
 gi|74419928|gb|ABA04127.1| hypothetical protein Nwi_0863 [Nitrobacter winogradskyi Nb-255]
          Length = 223

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 16/110 (14%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +I+ ++I  FR   S            +G    GK+++L+AI +    R  R  S++D  
Sbjct: 3   RIRIIDIRNFRCLKSFIWRPSGGINCLIGPGDAGKSSVLDAIDYCLGAR--RNLSFSD-- 58

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVD 114
                      A   G++  A ISI +   + D  ++ +++    +R  D
Sbjct: 59  -----------ADFHGLDVSAPISISVTLGELDDGLKSMEVYGNYLRSFD 97


>gi|328770435|gb|EGF80477.1| hypothetical protein BATDEDRAFT_16684 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 1246

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           +  L++  F++Y     L      T  +G NG GK+N+++AISF+   +    R     
Sbjct: 3  HLIQLDVENFKSYKGKQTLGPFYNFTAVIGPNGSGKSNLMDAISFVLGVKSSHLRSTQLR 62

Query: 63 DVT 65
          D+ 
Sbjct: 63 DLI 65


>gi|282890838|ref|ZP_06299356.1| hypothetical protein pah_c028o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499266|gb|EFB41567.1| hypothetical protein pah_c028o014 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 1168

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 21/166 (12%)

Query: 1   MTNRIKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGF 56
           M   +++K + I+ F+++A    L F    T  VG NG GK+N  +A  ++      +  
Sbjct: 1   MEAVLRLKEIEITGFKSFADRTTLKFHEGITAIVGPNGCGKSNTADAFRWVLGEQSAKSL 60

Query: 57  RRASYADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQ-IND 107
           R     DV   G+      +       + G +G   I    + +  R  R+   +  IN 
Sbjct: 61  RGGKMHDVIFAGASQRKPLNMAEVTLTLTGNQGELPIDYNEVSVTRRLFRNGESVYLING 120

Query: 108 VVIRVVDEL-----NKHLRISWLVPS---MDRIFSGLSMERRRFLD 145
             +R+ D       +   + S+ +     +D++ +    ERR   D
Sbjct: 121 NPVRLKDVQNLFLGSGVGKNSFSMFEQGKLDQVINYSPQERRFIFD 166


>gi|296804808|ref|XP_002843252.1| structural maintenance of chromosomes protein 4 [Arthroderma otae
           CBS 113480]
 gi|238845854|gb|EEQ35516.1| structural maintenance of chromosomes protein 4 [Arthroderma otae
           CBS 113480]
          Length = 1427

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           R+ I  L ++ F++YA  +    F A  +  VG NG GK+N+++++ F+    GFR +  
Sbjct: 221 RMVITHLVLTNFKSYAGQQFVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASKM 277

Query: 62  AD-----VTRIGSPSFFSTFARVEGMEGLA 86
                  +    +      F  VE      
Sbjct: 278 RQGKISALIHNSANFPNLPFCEVEVHFQEI 307


>gi|268562088|ref|XP_002646600.1| Hypothetical protein CBG20484 [Caenorhabditis briggsae]
          Length = 531

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 1   MTNRIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           +  +  +  L I  F++Y    +    ++ T  +G NG GK+N+++AISF+   R    R
Sbjct: 39  LPGKGHLHTLEIENFKSYKGKHIIGPFSRFTAIIGPNGSGKSNLMDAISFVLGERPTSLR 98

Query: 58  RASY 61
              Y
Sbjct: 99  VKKY 102


>gi|119774651|ref|YP_927391.1| SMC family protein [Shewanella amazonensis SB2B]
 gi|119767151|gb|ABL99721.1| SMC family protein [Shewanella amazonensis SB2B]
          Length = 1139

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 32/225 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    R+ F    T  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTRIPFPNPLTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-IND 107
             DV   GS +            F +   R+ G     +  I ++ +  R    L  +N 
Sbjct: 61  MTDVIFNGSSARRPVSVAGVELVFDNREGRLGGQYASYE-EIAVKRQVSRDGESLYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P            R+      E R F++        R++ R
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGMISRLIESRPQELRVFIEEAAG--ISRYKER 176

Query: 159 MIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
             D   R+   R  L   G         ++ ++A         R 
Sbjct: 177 RRDTENRIRHTRENLERLGDIRLELGKQLD-KLAVQAEAAKRYRE 220



 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 26/184 (14%)

Query: 184  SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
               + ++ +L  KI+      + A+        +K+        L   L+   +++   +
Sbjct: 919  EEWQQRLEKLRSKISRLGAINLAAIEEYDEAKARKDYLDEQDRDLEQALE-SLEEAIRKI 977

Query: 244  KEEYAKKLFDGRKMDSMSRRTLI----GPHRSDLIVDYCD---------------KAITI 284
              E   +     +  +    TL     G   + L +   D               K  TI
Sbjct: 978  DRETRSRFKATFEQVNADLGTLFPKVFGGGSAYLALTDNDLLETGVTIMARPPGKKNSTI 1037

Query: 285  AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
               S GE+ +  + +  A  RL       AP  +LDE+ A LD+   +   R++ ++ + 
Sbjct: 1038 HLLSGGEKALTALSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVDRFCRLLQEMSAS 1092

Query: 345  I-FM 347
            + F+
Sbjct: 1093 VQFI 1096


>gi|294501196|ref|YP_003564896.1| DNA repair protein RecN [Bacillus megaterium QM B1551]
 gi|294351133|gb|ADE71462.1| DNA repair protein RecN [Bacillus megaterium QM B1551]
          Length = 575

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 70/207 (33%), Gaps = 27/207 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F+   T+  G+ G GK+ I++AIS L  GRG      ++  R
Sbjct: 2   LAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAISLLVGGRG-----SSEFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADIS----IKLETRDD----------RSVRCLQINDVVI-- 110
            G+         +   E          + LE  D                 +IN  ++  
Sbjct: 57  HGTDRAEIEGLFLFDEEQHPSHEKAKQVGLEVEDGMIVLRRDITTNGKSICRINGKLVTL 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERLM 166
            ++ E+ + L           + +         LD+     V      +R     +  L 
Sbjct: 117 AILREVGQTLIDIHGQHEHQDLMNQD--RHLTLLDQYGGEKVEEALTEYREVFSRYTSLK 174

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +  ++L       +     I+ Q+ E+
Sbjct: 175 KQLDQLTENEQQMAHRLDLIQFQLDEI 201


>gi|17227215|ref|NP_478381.1| hypothetical protein pETB_p38 [Staphylococcus aureus]
 gi|17148615|dbj|BAB78436.1| unnamed protein product [Staphylococcus aureus]
          Length = 380

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          + +  + I  FRN   + L    ++++ +G N  GKTNI++AI 
Sbjct: 1  MNLSEVYIKNFRNIKEVTLSLS-KYSVILGKNNEGKTNIMKAIY 43


>gi|83943085|ref|ZP_00955545.1| hypothetical protein EE36_12928 [Sulfitobacter sp. EE-36]
 gi|83846093|gb|EAP83970.1| hypothetical protein EE36_12928 [Sulfitobacter sp. EE-36]
          Length = 573

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 23/125 (18%)

Query: 5   IKIKFLNI--------SEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAISFLSPGR 54
           +++  + I         +F+N   + + FD     T+ +G NG GK+N+LEA++ +    
Sbjct: 1   MRLDKIKIGSAKNSPTHQFKNLKDVTIDFDQNHWVTVVIGWNGTGKSNVLEALAVI---- 56

Query: 55  GFRRASYADVT-RIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIR 111
            FR     D+  R  SP F F    R++  E    I I  +    +    + + +D   R
Sbjct: 57  -FR-----DLIMRKRSPEFAFLLHYRMDSGEATRHIEIDADPDRAKEPFIIHVADDAEAR 110

Query: 112 VVDEL 116
               L
Sbjct: 111 GAGTL 115


>gi|83942731|ref|ZP_00955192.1| DNA repair protein RecN [Sulfitobacter sp. EE-36]
 gi|83846824|gb|EAP84700.1| DNA repair protein RecN [Sulfitobacter sp. EE-36]
          Length = 553

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+IS+      L L F     +  G+ G GK+ +L+++ F+   RG      AD+ R
Sbjct: 2   LRGLDISDMLIIDRLELAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RADLVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--QINDVVIRV 112
            G+       A  +  EG A  ++  E         +  +IN    R 
Sbjct: 57  QGASQG-EVTAWFDLPEGHAAHAVLEEAGLPGGGELILRRINGSDGRK 103


>gi|310641510|ref|YP_003946268.1| chromosome segregation protein smc [Paenibacillus polymyxa SC2]
 gi|309246460|gb|ADO56027.1| Chromosome segregation protein SMC [Paenibacillus polymyxa SC2]
          Length = 1189

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + ++ F+++A    + F    T  VG NG GK+NI + I ++      +  R   
Sbjct: 1   MFLKRIELAGFKSFADKTEMEFVRGITAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             D+   GS +     +  V       D ++ L+  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDARKAVNYGEVSLTLDNEDQALPLDFGEVTVTRRVHRSGDSEYFINRQSCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LRD 123


>gi|257485004|ref|ZP_05639045.1| chromosome segregation protein SMC [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 205

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 76/212 (35%), Gaps = 37/212 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM 190
           +  ++   R     +   + + +  + +  ++
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREEL 201


>gi|209526267|ref|ZP_03274797.1| chromosome segregation protein SMC [Arthrospira maxima CS-328]
 gi|209493364|gb|EDZ93689.1| chromosome segregation protein SMC [Arthrospira maxima CS-328]
          Length = 1199

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 50/296 (16%), Positives = 95/296 (32%), Gaps = 62/296 (20%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + ++ F+++  +  +      T+  G NG GK+NIL+A+ F   LS  +G R   
Sbjct: 2   VHIKRVELTNFKSFGGTTSIPLLPGFTVVSGPNGSGKSNILDALLFALGLSSSKGMRAER 61

Query: 61  YADVTRIGSPS-------------------------------FFSTFARVEGMEGLADIS 89
             D+                                         T AR    EG   ++
Sbjct: 62  LPDLVNNSQSRKTTVETRVTVTFDLSDLTFAELEEEPTELEGEGETGARGLVAEGEWSVT 121

Query: 90  IKLE-TRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL---------SME 139
            KL  T+         IN        EL++ L    + P    +               E
Sbjct: 122 RKLRVTKQGTYTSTYYINGEPC-TQTELHEQLNRLRIYPEGYNVVLQGDVTGIITMKPRE 180

Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199
           RR  +D +           +  F+R +      L            +E ++     ++  
Sbjct: 181 RREIIDELAG---------VAQFDRKIVLAREKLDTVKEREERSRIVEQELISQRDRLAK 231

Query: 200 ARVEMI--NALSSLIME---YVQKENFPHIKLSLTGFLDGKF--DQSFCALKEEYA 248
            R + +    L + + E   +    N+  ++  L  + +     D+S   L E++ 
Sbjct: 232 DRAQAMKYQQLKAELQEKSLWWAVLNYQTLQQQLWRYREQIEAGDRSHSELTEQFQ 287


>gi|195165821|ref|XP_002023737.1| GL19756 [Drosophila persimilis]
 gi|194105871|gb|EDW27914.1| GL19756 [Drosophila persimilis]
          Length = 232

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +    D  + ++  +      + +  V+    D+   + +
Sbjct: 61  RQSLLHEGTGARVISAYVEIIFDNTDNRVPIDKEE------IFLRRVIGAKKDQYFLNKK 114

Query: 122 IS 123
           + 
Sbjct: 115 VV 116


>gi|189202178|ref|XP_001937425.1| structural maintenance of chromosomes protein 1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187984524|gb|EDU50012.1| structural maintenance of chromosomes protein 1 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1295

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 53/266 (19%), Positives = 94/266 (35%), Gaps = 26/266 (9%)

Query: 6   KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           K+  L I  F++Y      L  D+  T  +G NG GK+N ++AISF+   R    R    
Sbjct: 3   KLVRLEIYNFKSYRGRHTLLFGDSYFTSIIGPNGSGKSNSMDAISFVLGVRSSHLRSEKL 62

Query: 62  ADVT---RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            D+    RI   +  +    V   +G A+         D +      N          + 
Sbjct: 63  KDMVYRGRIIQEARVNADGTVTEADGDANGDANGHANGDAAE-----NGEPQPSGPRNDP 117

Query: 119 HLRISWLVPSMD--------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
                  V   D        R  +       R  +R+V     ++   + +   L++ RN
Sbjct: 118 QNAWVKAVFEDDAEQEHEWQRAITSSGSSEYRINNRVVTQ--KQYGEALEEHSILVKARN 175

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQKENFPHIKLSL 228
            L+ +G  +    ++   Q+     +I+ +  +      L     E   ++N  H+    
Sbjct: 176 FLVFQGDVEK-LATTAPEQLTLQVERISGSLEQKAEYDRLKEE-SEAATEDNAKHLHERR 233

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDG 254
               + K  Q   A  +EY KKL + 
Sbjct: 234 GINGELKTYQDQKAEADEYEKKLAER 259


>gi|239052720|ref|NP_001155103.1| structural maintenance of chromosomes protein 1A [Danio rerio]
          Length = 1232

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKTLKD 63

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI---------R 111
           +     +G P+    F  +   E   +           S    +IN  V+          
Sbjct: 64  LIHGAPVGKPAANRAFVSMVYCEDNGE-ECTFTRAIIGSSSEYRINSKVVGLSDYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|16506809|gb|AAL23959.1|AF426167_1 SMC protein [Lactococcus lactis]
 gi|16030073|emb|CAC93883.1| SMC protein [Lactococcus lactis subsp. lactis]
          Length = 1174

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 60/166 (36%), Gaps = 27/166 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++A   ++ FD   T  VG NG GK+NI+EA+   L     +  R   
Sbjct: 1   MYLKKMEIVGFKSFADKTKVEFDKGITAVVGPNGSGKSNIVEALRWVLGEQSAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFAR-------VEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G+      ++    A        ++G +   ++ I              +N  
Sbjct: 61  MPDVIFAGTEKRRALNYAEVIAHFDNSDHYLQGQDENEEVVITRRLY-RNGDSEFLMNGR 119

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLD 145
             R + +++     + L      I S             ERR   +
Sbjct: 120 KCR-LRDIHDLFTDTGLGRDSLSIISQGRIESVFNSKPEERRAIFE 164


>gi|3098266|gb|AAC15582.1| mitosis-specific chromosome segregation protein SMC1 homolog
           [Takifugu rubripes]
          Length = 1233

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   R    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAERTSNLRVKTLKD 63

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI---------R 111
           +     +G P+    F  +   +   D  +        S    +IN+ V+          
Sbjct: 64  LIHGAPVGKPAANRAFVSMVYQQDSGD-ELAFTRVIIGSSSEYRINNKVVGLPEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|15838934|ref|NP_299622.1| recombination protein N [Xylella fastidiosa 9a5c]
 gi|11134700|sp|Q9PB02|RECN_XYLFA RecName: Full=DNA repair protein recN; AltName: Full=Recombination
           protein N
 gi|9107514|gb|AAF85142.1|AE004044_13 recombination protein N [Xylella fastidiosa 9a5c]
          Length = 557

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 21/115 (18%)

Query: 7   IKFLNISEF---RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++ L I +F   RN     L F    T+  G+ G GK+ I++A+ FLS  R     + + 
Sbjct: 2   LRHLTIKDFAVVRNIE---LEFGPGMTVVSGETGAGKSLIIDALGFLSGLR-----ADSS 53

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           V R G+          E  E  A+ +I +       +R ++++D     +  + +
Sbjct: 54  VVRHGA----------ERAELSAEFNITIHHPARVWLRNVELDDADQCQLRRIIR 98


>gi|323450436|gb|EGB06317.1| hypothetical protein AURANDRAFT_29295 [Aureococcus
          anophagefferens]
          Length = 113

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 5/82 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA--ISFLSPGRG-FRRASYAD 63
          I  +    F  +  L +    +     G NG GK+ IL A  I   +  +   R     D
Sbjct: 14 IHEIYCEHFMCHKKLTIKPCRRINFINGANGSGKSAILAALQICLGASAKSTHRGNRMGD 73

Query: 64 VTRIG--SPSFFSTFARVEGME 83
          + R G    +        EG +
Sbjct: 74 LVREGYEGQALVRVSLVNEGSD 95


>gi|306826815|ref|ZP_07460116.1| possible prophage Lp2 protein 4 [Streptococcus pyogenes ATCC 10782]
 gi|304430978|gb|EFM33986.1| possible prophage Lp2 protein 4 [Streptococcus pyogenes ATCC 10782]
          Length = 573

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 62/386 (16%), Positives = 117/386 (30%), Gaps = 91/386 (23%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK +N+  FR +  L L  +   T   G NG GK+ IL A+S     +         +  
Sbjct: 5   IKSINLQNFRGFEDLHLNLNKYVTCISGHNGTGKSTILAALSNTGEYK-----KDKTL-- 57

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +  F   F ++   +   D  I  E                                 
Sbjct: 58  -NNKPFRGEFEKIILGDPNYDKKINSEINI------------------------------ 86

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF----DSSW 182
              + +F                     H+   + +   ++ +  +L         D   
Sbjct: 87  -EFENLFEDG------------------HKINSVKYRTAIQNKKAVLPHYRPLSPKDIIE 127

Query: 183 CSSIEAQMAELGVKINIA-------RVEMINALSSLIMEYVQKENFPHIKLSLTGFL--- 232
              I+ + +EL  K+          R  +I        ++ +K  +P   L L+      
Sbjct: 128 LKDIDVKYSELPWKLYRNTGKLKHPRFRLIPK-KDKNRDHERKIEWPTFYLGLSRLYPLG 186

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           + + +     L   Y  ++    K      D      +   +     V            
Sbjct: 187 EVEENLLIKDLNSGYEDEISRIHKDIMTSSDEYEAVQVTNINGMKTGVLVNTTTYPGTAN 246

Query: 288 STGE----QKVVLVGIFLAHARLI--SNTTGFA-PILLLDEISAHLDEDKRNALFRIV-- 338
           S G+    Q   ++    +  +L      TG+   +LL+DEI A L    +N L   +  
Sbjct: 247 SAGQDNLGQ---ILSAVFSFEKLKSNKENTGYKGGLLLIDEIDATLHPAAQNKLLNFLLE 303

Query: 339 --TDIGSQIFMTGTDKSVFDSLNETA 362
              ++  QI  T    S+ + +N+T+
Sbjct: 304 KSLELDLQIVFTTHSLSLLEYINDTS 329


>gi|300727968|ref|ZP_07061346.1| DNA repair protein RecN [Prevotella bryantii B14]
 gi|299774810|gb|EFI71424.1| DNA repair protein RecN [Prevotella bryantii B14]
          Length = 557

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 84/253 (33%), Gaps = 23/253 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F     L + F++  ++  G+ G GK+ IL AI  L    +  +  ++    
Sbjct: 2   LKQLYIRNFTLIDELNIQFNSGFSVITGETGAGKSIILGAIGLLLGNRADSKSIKQGRDK 61

Query: 63  -------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VV 113
                  D++R    SFF+     E    + D  I+ E       R   IND  ++  ++
Sbjct: 62  CIIEAHFDLSRYNMESFFTNH---EIEMDMEDTIIRRELTISGKSRAF-INDTPVQLTLM 117

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRNR 171
            EL + L    +      +       +   +D +         +++    +  L++    
Sbjct: 118 RELGETL--VDIHSQHQNLLLQKEDFQLNVIDIIGMTEQELNEYKKEFNKYHELVKETED 175

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   +      +  Q+ E+      +  +    L     +    E+      S    
Sbjct: 176 TRAQIEENKRNEDFLRFQLKEISEVKMQSGDQ--EKLEKESEQLAHAEDIKSALYSSDQL 233

Query: 232 LDGKFDQSFCALK 244
           L G        LK
Sbjct: 234 LMGDEGGIIENLK 246


>gi|94313563|ref|YP_586772.1| ATP-dependent endonuclease [Cupriavidus metallidurans CH34]
 gi|93357415|gb|ABF11503.1| ATP-dependent endonuclease of the OLD family-like protein
          [Cupriavidus metallidurans CH34]
          Length = 626

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +KI+ + I  FR    + + FD+  T F+G NG GK+ +L A+ +   G+
Sbjct: 1  MKIQTVRIRNFRTLKDVTIPFDS-VTTFIGPNGAGKSTVLRALDWFFNGK 49


>gi|172037351|ref|YP_001803852.1| DNA repair protein [Cyanothece sp. ATCC 51142]
 gi|171698805|gb|ACB51786.1| DNA repair protein [Cyanothece sp. ATCC 51142]
          Length = 588

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/262 (17%), Positives = 82/262 (31%), Gaps = 28/262 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L L F     +  G+ G GK+ IL+AI  +  G+         + R
Sbjct: 2   LSLLQIKNFALVDRLTLEFGQGLNVLTGETGAGKSIILDAIDVVLGGK-----VNNRLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADI--SIKLETRDDRSV---RCLQINDVVIRVVDELNKHLR 121
            G+    S  A  +G E +       +++  DD +V   R L +    +R    +N  L 
Sbjct: 57  QGTQ-HASLEATFDGNERVLQWLQEQEIDPLDDGTVVCLRELSLTGETVRSRSRINGVLV 115

Query: 122 ISWLVPSMDRIFSG-----------LSMERRRFLDR-MVFAIDPRHRRRMIDFERLMRGR 169
              L+     +               +  +R  LD     AI  + +     +E   +  
Sbjct: 116 NLQLMGQFRNLLVEITAQGQTVQLMDATRQRELLDLYGGTAILKQRKLVESAYENCKKAE 175

Query: 170 NRLLTEGYFDSS---WCSSIEAQMAELGVKINI--ARVEMINALSSLIMEYVQKENFPHI 224
             L      +         +E Q+ EL          +E +      +   V+ +   + 
Sbjct: 176 KTLEKRKKSEQERLQRLDLLEYQLKELDEAQLSDPNELEQLEQERDRLSHVVELQKLSYE 235

Query: 225 KLSLTGFLDGKFDQSFCALKEE 246
              L    D         L E 
Sbjct: 236 TYQLLYQNDNGEPAIADRLGEA 257


>gi|66506890|ref|XP_395059.2| PREDICTED: structural maintenance of chromosomes protein 1A
          isoform 1 [Apis mellifera]
          Length = 1230

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
          +K + +  F++Y   L +      T  VG NG GK+N ++AISF+        R   +++
Sbjct: 5  LKHIEVENFKSYKGKLIIGPLKSFTAVVGPNGSGKSNFMDAISFVMGEKTSSLRVKRFSE 64

Query: 64 VTR 66
          +  
Sbjct: 65 LIH 67


>gi|313576854|gb|ADR67028.1| hypothetical protein [Klebsiella pneumoniae subsp. pneumoniae]
          Length = 769

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          +T +I ++F+ + +FR    ++L  D + TI VG N  GKT+IL A+  FL+ G  F
Sbjct: 10 LTGQISLRFVELCQFRRLGKVQLEVDPKTTILVGANNSGKTSILAALRHFLADGSPF 66


>gi|84999442|ref|XP_954442.1| SMC (structural maintenance of chromosome) protein (type 1)
           [Theileria annulata]
 gi|65305440|emb|CAI73765.1| SMC (structural maintenance of chromosome) protein (type 1),
           putative [Theileria annulata]
          Length = 1299

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF--LSPGRGFRRASYAD 63
           I  + +  F++Y  ++ +   A     +G NG GK+N+++AISF         R ++  D
Sbjct: 74  IHAIELHNFKSYFGTVLIDKFASFNAVIGPNGSGKSNLMDAISFVLCIRTSTLRGSNLRD 133

Query: 64  VTR 66
           +  
Sbjct: 134 LIN 136


>gi|117926509|ref|YP_867126.1| hypothetical protein Mmc1_3230 [Magnetococcus sp. MC-1]
 gi|117610265|gb|ABK45720.1| hypothetical protein Mmc1_3230 [Magnetococcus sp. MC-1]
          Length = 113

 Score = 53.4 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAI 47
          +++  + +  +R +  L +   +A   + +G+NG GK++ILE +
Sbjct: 22 MRLTRVTLEHYRRFKQLEIQLGNAPIVVLIGNNGAGKSSILEGV 65


>gi|328711900|ref|XP_001952378.2| PREDICTED: structural maintenance of chromosomes protein 3-like
          [Acyrthosiphon pisum]
          Length = 1206

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
          + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1  MHIKQVIIHGFKSYREQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60

Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLET 94
                         A VE +    D  + +E 
Sbjct: 61 RQALLHEGTGPRVVTAYVEIIFDNTDNRLPIEK 93



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQI 345
            S G++ +V +G+  A           AP  L DEI   LD   R A+  ++ ++   +Q 
Sbjct: 1105 SGGQKSLVALGLIFA-----IQKCDPAPFYLFDEIDQALDPQHRKAVADMIHEMSDHAQ- 1158

Query: 346  FMTGTDKSVFDSLNETAKFMRIS 368
            F+T T     + L    KF  + 
Sbjct: 1159 FITTT--FRPELLFNAHKFYGVK 1179


>gi|307700777|ref|ZP_07637802.1| DNA repair protein RecN [Mobiluncus mulieris FB024-16]
 gi|307613772|gb|EFN93016.1| DNA repair protein RecN [Mobiluncus mulieris FB024-16]
          Length = 573

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 90/301 (29%), Gaps = 36/301 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L I      +   L F    T+  G+ G GKT +L ++++L  G   R +    +  
Sbjct: 2   IESLRIENLGTISHAELGFSPGFTVITGETGAGKTMLLTSLNWL-LGAQPRAS----LVA 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL---RIS 123
            GS S       +      A +       +D  V   +I     R    L          
Sbjct: 57  AGSESAVVEGTFLVDASAAAVVMEAGGVVEDGVVEAARIVPAQSRSKAHLGGRTVPAATL 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAID-------PRHRRRMIDFERLMRGRNRLLTEG 176
               +      G + + R  L       +         H+  +  + +          E 
Sbjct: 117 GTFGADLVSVHGQATQSR--LRGEKAQREAVDEFGGKTHQAALQTYAKA-------WEEW 167

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGK 235
              +      E        +    R E++  LS        ++  F  +  +++   + +
Sbjct: 168 EAATKDLEIWEENF-----ETRQRRREVLEHLSEEFQALAPEDGEFEELTATISRLSNVE 222

Query: 236 FDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             +        AL ++   ++     +D   R       +   + D  D   + ++ S G
Sbjct: 223 NLRENATAALVALDDDSEIQVGANALVDIALRAMEKVTQQDGSLADLADMVASASY-SLG 281

Query: 291 E 291
           E
Sbjct: 282 E 282


>gi|83953971|ref|ZP_00962692.1| DNA repair protein RecN [Sulfitobacter sp. NAS-14.1]
 gi|83841916|gb|EAP81085.1| DNA repair protein RecN [Sulfitobacter sp. NAS-14.1]
          Length = 553

 Score = 53.4 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+IS+      L L F     +  G+ G GK+ +L+++ F+   RG      AD+ R
Sbjct: 2   LRGLDISDMLIIDRLELAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RADLVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--QINDVVIRV 112
            G+       A  +  EG A  ++  E         +  +IN    R 
Sbjct: 57  QGASQG-EVTAWFDLPEGHAAHAVLEEAGLPGGGELILRRINGSDGRK 103


>gi|326406355|gb|ADZ63426.1| chromosome segregation SMC protein [Lactococcus lactis subsp.
           lactis CV56]
          Length = 1174

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 60/166 (36%), Gaps = 27/166 (16%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++A   ++ FD   T  VG NG GK+NI+EA+   L     +  R   
Sbjct: 1   MYLKKMEIVGFKSFADKTKVEFDKGITAVVGPNGSGKSNIVEALRWVLGEQSAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFAR-------VEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G+      ++    A        ++G +   ++ I              +N  
Sbjct: 61  MPDVIFAGTEKRRALNYAEVIAHFDNSDHYLQGQDENEEVVITRRLY-RNGDSEFLMNGR 119

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLD 145
             R + +++     + L      I S             ERR   +
Sbjct: 120 KCR-LRDIHDLFTDTGLGRDSLSIISQGRIESVFNSKPEERRAIFE 164


>gi|168486525|ref|ZP_02711033.1| DNA repair protein RecN [Streptococcus pneumoniae CDC1087-00]
 gi|183570466|gb|EDT90994.1| DNA repair protein RecN [Streptococcus pneumoniae CDC1087-00]
          Length = 555

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 27/209 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+P                      +G+E   +I I+ E          ++N  ++   
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREI-LQNGRSISRVNGQMVNLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMR 167
           V+  + +HL         + +              F D   + +   ++     + ++ +
Sbjct: 116 VLRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRK 173

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
               +        +    +E QMAE+   
Sbjct: 174 QVLEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|160939291|ref|ZP_02086642.1| hypothetical protein CLOBOL_04185 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438254|gb|EDP16014.1| hypothetical protein CLOBOL_04185 [Clostridium bolteae ATCC
           BAA-613]
          Length = 685

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 62/374 (16%), Positives = 115/374 (30%), Gaps = 63/374 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA--------QHTIFVGDNGVGKTNILEAISFLSPGRGF 56
           + +  + I  FR Y    L               + +G+N  GKT I++AI F+   R  
Sbjct: 1   MYLSCVRIWNFRKYGYANLDATPALEVYLKGGLNVLIGENDTGKTAIIDAIKFVLGTRSH 60

Query: 57  RRASYADVTRIGSPSFFS--------TFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                 +                    F  +   E    +   L    D++   +++   
Sbjct: 61  DTLQIKECDFYEDLKGERSELLKIECVFQELSDDEAGNFLE-WLTFDGDKAELSVRM--- 116

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           + R  D              M+ I +G+     RF    +           + + + +R 
Sbjct: 117 IARRRDNRI-----------MNSITAGMPELDTRFDAIEL---------LRVTYLKPLRD 156

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
               L  GY        +   +      +++         +  I EY +KE     ++  
Sbjct: 157 AENELKHGYHSRLAQILLNHPLFTKEKDLHVL-ERYFGIANQKIEEYFKKEKLEKDEIF- 214

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL-----IVDYCDKAIT 283
            G  DG+        K E   + F G   DS     +I   R++L      +        
Sbjct: 215 -GIEDGEKGAKEITGKLEATLREFMGNNYDSHGYEPIISASRNELTSILRRLSLIIAQNQ 273

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
           +  GS  +       +F+A   L+ +      I L++EI AHL    +  L   + +   
Sbjct: 274 VGLGSLNQ-------LFIALELLLFDIENRFNIALIEEIEAHLHPQAQLRLIAYLQNKND 326

Query: 344 --------QIFMTG 349
                   Q  +T 
Sbjct: 327 NDNSNKKLQCIITT 340


>gi|257486717|ref|ZP_05640758.1| hypothetical protein PsyrptA_25805 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 589

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 42/359 (11%)

Query: 5   IK-IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +  +  ++I  FR+   + L      T  VG N  GK+ IL+AI  +   + F   + A+
Sbjct: 1   MHSLSKIHIKNFRSCKQVILPLGD-FTPLVGQNNAGKSTILDAIRLVLAPKAF-AKTDAN 58

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI- 122
                        A V G+       I  E +   ++    IN  +   +          
Sbjct: 59  ----DPNQPVIISACVSGITEELIAQIP-EPKHQAAITPYCINGDLWIRISASGSTKPTT 113

Query: 123 -SWLVPSMDRIFSGLSMERRRF---LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
             W    +D    GL    R +   L + + A+ P          R M      L +G  
Sbjct: 114 EVWENAELDE--QGLPASWRSYPTGLPQAISALLPEALHI-----RAMDDVQEDLGKGKA 166

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
            S+    ++  MA     I  A  E+ +AL+++                    L  +FD 
Sbjct: 167 GSTIRGLLDEIMAP----ILTAHQEVQDALTAVRNILGADGEN-------RSPLLTEFDT 215

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH---GSTGEQKVV 295
           +       +   L     + S+  +        DL V       T      GS G Q+ +
Sbjct: 216 NATNALSSFFPGLLLNLDVPSIDVKEFF--KSGDLNVTDEISGQTRRFDTLGS-GAQRAI 272

Query: 296 LVGIF--LAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FRIVTDIGSQIFMTG 349
            + +   LA  R   +      +LL+DE    L       L     +++  G Q+  T 
Sbjct: 273 QMALIRLLADIRKTRDQDLARRLLLIDEPEIFLHPQGVRGLREALHVLSKSGYQVVFTT 331


>gi|308801941|ref|XP_003078284.1| structural maintenance of chromosomes 1 protein (ISS)
          [Ostreococcus tauri]
 gi|116056735|emb|CAL53024.1| structural maintenance of chromosomes 1 protein (ISS)
          [Ostreococcus tauri]
          Length = 1131

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 6  KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          +I  + +  F++Y     +      T  +G NG GK+N+++AISF+   R    R  ++ 
Sbjct: 16 RISRIEVENFKSYKGQHVIGPFKTFTSVIGPNGSGKSNLMDAISFVLGVRSAQLRGTTFK 75

Query: 63 DVT 65
          D+ 
Sbjct: 76 DLI 78


>gi|21673737|ref|NP_661802.1| hypothetical protein CT0909 [Chlorobium tepidum TLS]
 gi|21646861|gb|AAM72144.1| hypothetical protein CT0909 [Chlorobium tepidum TLS]
          Length = 402

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 63/386 (16%), Positives = 120/386 (31%), Gaps = 82/386 (21%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYAD 63
           +++ L++  +R   ++RL      T+ +G NG GK+ +++  +FLS   G G R+A    
Sbjct: 10  RVEALHVQNYRALQNVRLDSITPLTVLLGPNGSGKSTLVDVFAFLSECFGEGLRKAWDRR 69

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                       F  +   + +  I I+L+ R+                         + 
Sbjct: 70  ----------GRFRELRSRDSVGPIVIELQYREKPGT--------------------PLI 99

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE----RLMRGRNRLLTEGYFD 179
                +D       + +R FL        P      +D+     R++ G      +   +
Sbjct: 100 TYHLEIDE-KDRGPVVKREFLRWKRTH--PGAPFYFLDYREGVGRVITGEQPESQDKRIE 156

Query: 180 SSWC--SSIEA----QMAE------LGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                   +      Q+AE      L   I    +  ++A           E     +LS
Sbjct: 157 KPLSGPDVLAVNTLGQLAENPRVIALRAFITSWHLSYLSA----DAARGNPEAGAEERLS 212

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFD-----GRKMDSMSRRTLIGPHRSDLIVDYCDK-- 280
            TG            L EE+ ++L        R++  + + T        L++   D   
Sbjct: 213 QTG---DNLANVIQYLGEEHPERLNKIFETLKRRVPRIEKVTSRPLDDGRLLLQVKDAPF 269

Query: 281 --AITIAHGSTGEQKVVLVGIFL-----AHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
              +     S G  K++   I L          I     +    LL E++   D      
Sbjct: 270 SSPVLARFASDGTLKMLAYLILLYDPEPPQLIGIEEPENYLHPRLLPELAEECD------ 323

Query: 334 LFRIVTDIGSQIFMTGTDKSVFDSLN 359
               +    +Q+ +T       D L 
Sbjct: 324 ----MASERTQLIVTTHSPFFIDRLR 345


>gi|332026926|gb|EGI67027.1| DNA repair protein RAD50 [Acromyrmex echinatior]
          Length = 1520

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 15/123 (12%)

Query: 6   KIKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--------- 52
           K++ L +   RN+        + F    T+ +G NG GKT I+EA+ + +          
Sbjct: 3   KVRKLALRGIRNFGDDSEDAIIRFSCPLTLILGPNGTGKTTIIEALKYATTGEFPPGSDK 62

Query: 53  GRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           G+ F       +   GS         ++ M     +S  +E+      +   ++  V + 
Sbjct: 63  GKSF--IHDPMLATTGSVRGVIKAEVIDNMGTSYVVSRTIESSKGEKKKFKTLDSTVTKT 120

Query: 113 VDE 115
             +
Sbjct: 121 SKD 123



 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 77/223 (34%), Gaps = 34/223 (15%)

Query: 163  ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
            + L+R RN  L               ++ +   +  +AR    N     I   VQ++   
Sbjct: 1072 QALLRQRNVALGTQEELERIIKQYTQELRK--EEYRLARRNYTNK---CIELTVQEDTIA 1126

Query: 223  HIKLSLTGFLD---GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD------- 272
            ++K +    LD    ++ +       +  KKL+      + +    I    +D       
Sbjct: 1127 NLK-AYNKILDKAMIEYHEERMLTVNKIMKKLWKHVYKGTDTSSIEICTEPTDGVGSNRR 1185

Query: 273  ------LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
                  +   +  K       S G++ +  + I LA A       G   IL LDE + +L
Sbjct: 1186 SYNYKLIQTKHGCKMDMKGRCSAGQKVLASIIIRLALAETFCKNCG---ILALDEPTTNL 1242

Query: 327  DEDKRNALFRIVT---------DIGSQIFMTGTDKSVFDSLNE 360
            DED  N+L  ++T             Q+ +   D+     L +
Sbjct: 1243 DEDNANSLADMLTKVVELRSKYQKNFQLIIISHDEKFLQKLAD 1285


>gi|312115733|ref|YP_004013329.1| chromosome segregation protein SMC [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220862|gb|ADP72230.1| chromosome segregation protein SMC [Rhodomicrobium vannielii ATCC
           17100]
          Length = 1152

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++I  L +  F+++     L+     T  VG NG GK+N+LEA+ ++   +  +  R ++
Sbjct: 1   MQITRLRLLGFKSFVEPTELLIGPGLTGVVGPNGCGKSNLLEALRWVMGETSYKTMRASA 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G+      +       V+  +  A  +      +++  R  R +    ++N  
Sbjct: 61  MDDVIFAGTDKRPARNMAEVMVAVDNTKRTAPAAFNDADVLEISRRIQREAGSVYKVNGK 120

Query: 109 VIRVVD 114
            +R  D
Sbjct: 121 EVRAKD 126


>gi|297588525|ref|ZP_06947168.1| chromosome segregation protein Smc [Finegoldia magna ATCC 53516]
 gi|297573898|gb|EFH92619.1| chromosome segregation protein Smc [Finegoldia magna ATCC 53516]
          Length = 1167

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 20/173 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++   ++L FD   T  VG NG GK+NI +AI   L     +  R   
Sbjct: 1   MGLKSVEIQGFKSFKDKIKLNFDNPITAIVGPNGSGKSNISDAILWVLGEQSAKNLRGNK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGL----ADISIKLET-RDDRSVRCLQINDVVI 110
             DV   G+      +F       E          +I++     R   S   +  N V +
Sbjct: 61  MQDVIFAGTQKEKPVNFAQVCITFENDLWKDIDYQEITVTRRVFRTGESEYYINKNQVRL 120

Query: 111 RVVDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
           + V EL       K          +D I S  S +RR   +        ++ +
Sbjct: 121 KDVKELFLNTGIGKEGYSVIGQGKIDEILSSKSEDRRELFEEASGISKQKYIK 173


>gi|224476346|ref|YP_002633952.1| putative chromosome segregation protein SMC [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222420953|emb|CAL27767.1| putative chromosome segregation protein SMC [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 1189

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K +N   F+++A    + FD   T  VG NG GK+N+ +AI   L     +  R + 
Sbjct: 2   VYLKSINAFGFKSFAEQTEVNFDQGVTAIVGPNGSGKSNVTDAIKWVLGEQSAKSLRGSK 61

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRV 112
             D+   G+      ++     +++      +I    I +  R  RS       +     
Sbjct: 62  MEDIIFSGAEHRKAQNYAEVRLKLDNHAHQLNIDEDEIIVTRRLYRSGDSAYYLNNDRAR 121

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLD 145
           + ++ +    S L      I S             +RR+ ++
Sbjct: 122 LKDIIELFLDSGLGKEAFSIISQGRVDEILNAKPADRRQIIE 163


>gi|212537423|ref|XP_002148867.1| structural maintenance of chromosome complex subunit SmcA
           [Penicillium marneffei ATCC 18224]
 gi|210068609|gb|EEA22700.1| structural maintenance of chromosome complex subunit SmcA
           [Penicillium marneffei ATCC 18224]
          Length = 1184

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 10/134 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + + +F  Y ++   F +Q  + +G NG GK+ ++ AI   L  G     R    +
Sbjct: 97  AIVRMKLKDFVTYTNVEYHFGSQLNMIIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDAS 156

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHL 120
           +  + G+           G     +  I+   + + +     I+      + V +LN+  
Sbjct: 157 EFVKHGAKEAIIEIELARGPPFKTNPVIRRVIKFEGNKSTFFIDGKEATRKQVMKLNQKF 216

Query: 121 RISW-----LVPSM 129
            I        +P  
Sbjct: 217 SIQIDNLCQFLPQD 230


>gi|149008195|ref|ZP_01831700.1| DNA repair protein RecN [Streptococcus pneumoniae SP18-BS74]
 gi|147760376|gb|EDK67356.1| DNA repair protein RecN [Streptococcus pneumoniae SP18-BS74]
          Length = 555

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 27/209 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+P                      +G+E   +I I+ E          ++N  ++   
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREI-LQNGRSISRVNGQMVNLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMR 167
           V+  + +HL         + +              F D   + +   ++     + ++ +
Sbjct: 116 VLRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRK 173

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
               +        +    +E QMAE+   
Sbjct: 174 QVLEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|603501|dbj|BAA06454.1| cut3 protein [Schizosaccharomyces pombe]
          Length = 1324

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 1   MTNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           +  R+ +  L ++ F++YA  ++   F    +  VG NG GK+N+++A+ F+    GFR 
Sbjct: 120 LPPRLVVYELRLTNFKSYAGTQIVGPFHPSFSSIVGPNGSGKSNVIDALLFVF---GFRA 176

Query: 59  ASYAD 63
           +    
Sbjct: 177 SKLRQ 181


>gi|307105756|gb|EFN54004.1| hypothetical protein CHLNCDRAFT_58355 [Chlorella variabilis]
          Length = 1141

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++   +S F  Y    +    +  + +G NG GK++++ AI     GR        DV
Sbjct: 16  MRVE---VSNFMTYKRATVEPGPKLNLVLGPNGTGKSSLVCAICVGLAGRTSLLGRAEDV 72

Query: 65  ---TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
               R G+ + +       G      + ++ E   D +     IN   +R+ D
Sbjct: 73  SSFVRRGASAGWVEITLSSGNPMRPHV-VRREMHRDTNSSEWYINREKVRMKD 124


>gi|303254299|ref|ZP_07340408.1| DNA repair protein RecN [Streptococcus pneumoniae BS455]
 gi|303258836|ref|ZP_07344815.1| DNA repair protein RecN [Streptococcus pneumoniae SP-BS293]
 gi|303261520|ref|ZP_07347467.1| DNA repair protein RecN [Streptococcus pneumoniae SP14-BS292]
 gi|303264190|ref|ZP_07350110.1| DNA repair protein RecN [Streptococcus pneumoniae BS397]
 gi|303266179|ref|ZP_07352072.1| DNA repair protein RecN [Streptococcus pneumoniae BS457]
 gi|303268094|ref|ZP_07353894.1| DNA repair protein RecN [Streptococcus pneumoniae BS458]
 gi|307127206|ref|YP_003879237.1| DNA repair protein RecN [Streptococcus pneumoniae 670-6B]
 gi|301801937|emb|CBW34662.1| putative DNA repair protein [Streptococcus pneumoniae INV200]
 gi|302598793|gb|EFL65830.1| DNA repair protein RecN [Streptococcus pneumoniae BS455]
 gi|302637100|gb|EFL67588.1| DNA repair protein RecN [Streptococcus pneumoniae SP14-BS292]
 gi|302639779|gb|EFL70235.1| DNA repair protein RecN [Streptococcus pneumoniae SP-BS293]
 gi|302642311|gb|EFL72658.1| DNA repair protein RecN [Streptococcus pneumoniae BS458]
 gi|302644349|gb|EFL74603.1| DNA repair protein RecN [Streptococcus pneumoniae BS457]
 gi|302646002|gb|EFL76229.1| DNA repair protein RecN [Streptococcus pneumoniae BS397]
 gi|306484268|gb|ADM91137.1| DNA repair protein RecN [Streptococcus pneumoniae 670-6B]
          Length = 555

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 27/209 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+P                      +G+E   +I I+ E          ++N  ++   
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREI-LQNGRSISRVNGQMVNLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMR 167
           V+  + +HL         + +              F D   + +   ++     + ++ +
Sbjct: 116 VLRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRK 173

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
               +        +    +E QMAE+   
Sbjct: 174 QVLEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|281491299|ref|YP_003353279.1| chromosome partition protein Smc [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375040|gb|ADA64558.1| Chromosome partition protein Smc [Lactococcus lactis subsp. lactis
           KF147]
          Length = 1174

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 25/165 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++A   ++ FD   T  VG NG GK+NI+EA+   L     +  R   
Sbjct: 1   MYLKKMEIVGFKSFADKTKVEFDKGITAVVGPNGSGKSNIVEALRWVLGEQSAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFAR-------VEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G+      ++    A        ++G +   ++ I              +N  
Sbjct: 61  MPDVIFAGTEKRRALNYAEVIAHFDNSDHYLQGQDENEEVVITRRLY-RNGDSEFLMNGR 119

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
             R+ D         L +          ++ +F+    ERR   +
Sbjct: 120 KCRLRDIHDLFTDTGLGRDSLSIISQGRIESVFNSKPEERRAIFE 164


>gi|270299705|gb|ACZ68511.1| hypothetical protein SAP057A_038 [Staphylococcus aureus]
          Length = 380

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          + +  + I  FRN   + L    ++++ +G N  GKTNI++AI 
Sbjct: 1  MNLSEVYIKNFRNIKEVTLSLS-KYSVILGKNNEGKTNIMKAIY 43


>gi|225856875|ref|YP_002738386.1| DNA repair protein RecN [Streptococcus pneumoniae P1031]
 gi|225725654|gb|ACO21506.1| DNA repair protein RecN [Streptococcus pneumoniae P1031]
          Length = 555

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 27/209 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+P                      +G+E   +I I+ E          ++N  ++   
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREI-LQNGRSISRVNGQMVNLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMR 167
           V+  + +HL         + +              F D   + +   ++     + ++ +
Sbjct: 116 VLRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRK 173

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
               +        +    +E QMAE+   
Sbjct: 174 QVLEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|84623567|ref|YP_450939.1| recombination protein N [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84367507|dbj|BAE68665.1| recombination protein N [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 554

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 95/268 (35%), Gaps = 39/268 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LRHLSIKDFAVVRATELEFGPGMTVVSGETGTGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLADISIKLE--------TRDDRSVRCLQINDVVI--R 111
            G+        F   A   G+  LAD  +  E         R D   R   IN   +   
Sbjct: 57  HGADRAELSAEFQLPAEHPGLRWLADNELDDEAQCQLRRIIRADGGSRA-WINGRPVTSS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRG 168
            + EL   L           + +  S      LD   R     D   R+    ++ L+  
Sbjct: 116 QLAELASRLVEIHGQHEHQALMARHSQL--ALLDAYARNSAQRDQV-RQASQRWQALLDE 172

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL-----------GVKINIARVEMINALSSLIMEYVQ 217
           R+ L  +G   S     +E Q+AEL            + +N  R     AL        Q
Sbjct: 173 RDTLSAQGDV-SDRIGFLEHQLAELEREDLDPAAIAALDVNHRRQAHATALIGACDSVAQ 231

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKE 245
           + N      +L    D + D +  A  E
Sbjct: 232 QLNGDEGASALGLLQDSRHDIAHVAEHE 259


>gi|41615048|ref|NP_963546.1| hypothetical protein NEQ256 [Nanoarchaeum equitans Kin4-M]
 gi|49036442|sp|P62135|RAD50_NANEQ RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|40068772|gb|AAR39107.1| NEQ256 [Nanoarchaeum equitans Kin4-M]
          Length = 786

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 98/279 (35%), Gaps = 41/279 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + ++  + ++     F+    + +G NG GKT ++E+I     G  F  A   D  +
Sbjct: 4   VKKVILNNVKTHSKREFDFEKGINLILGPNGSGKTTLVESIFLALFGGDF--ARVIDYFK 61

Query: 67  IGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD----ELNKHLR 121
            G  +   +     +G          LE         L++ D + + +     +L + ++
Sbjct: 62  KGEKTMAITLILEDKGKTYRIRRKWVLENNAKLVESSLELIDTIPKKLASDHNKLLQQIK 121

Query: 122 ISW-----LVP-------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
             +     ++P        + +I      +R+ + D ++        + + +F   ++  
Sbjct: 122 HLFGLDKKIIPLIYYKQNEITKIIEMDPRKRKEWFDEILG------IKDLEEFSEKLKMA 175

Query: 170 NRLLTEGYFDSSWCSS------------IEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
            +L+  G                     +E ++     K+ +    + N L +L  EY  
Sbjct: 176 IKLIKTGKISRIEDRIKLLKAELNKKSLLENKLKNYKEKLVL----LSNELENLEKEYKI 231

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            EN     L L   L     Q      +E   K+ + R+
Sbjct: 232 LENQYKEYLELKAKLKSIEGQINNINVKEIESKINNIRE 270


>gi|315038923|ref|YP_004032491.1| DNA repair ATPase [Lactobacillus amylovorus GRL 1112]
 gi|312277056|gb|ADQ59696.1| DNA repair ATPase [Lactobacillus amylovorus GRL 1112]
          Length = 831

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 16/172 (9%)

Query: 194 GVKINIARVEMIN---ALSSLIMEYVQKENFPH-IKLSLTGFLDGKFDQSFCALKEEYAK 249
              +  AR ++ N      S   EY+        I  SL    + +F +   A KE Y  
Sbjct: 657 STAVFEARQDLANTETNFESSSKEYLANLLAAKWIGRSLDLASNERFPKMLKAAKE-YLA 715

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L  GR +D    + L    +         K   + + S G  + +   + LA    I +
Sbjct: 716 LLTGGRYVDLELGKKLTVIRKD-------GKKRDVKYLSRGTAEQLYFALKLAFVEQIKD 768

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
                  +L+D+  A+ D+ +   + +++  I   +Q+ +    +++ + L 
Sbjct: 769 EINLP--ILIDDSFANFDDHRIKYIEQLLKKISENNQVLIFTAQENLVEKLG 818


>gi|302689731|ref|XP_003034545.1| hypothetical protein SCHCODRAFT_81772 [Schizophyllum commune H4-8]
 gi|300108240|gb|EFI99642.1| hypothetical protein SCHCODRAFT_81772 [Schizophyllum commune H4-8]
          Length = 1107

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 4/112 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+F+ +S+F  +  L   F  Q    +G NG GK+ +L AI+    G+     R A    
Sbjct: 100 IEFIEMSQFMCHKLLSFNFGPQINFIIGHNGSGKSAVLSAITVALGGKTASTGRGAGLKS 159

Query: 64  VTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             R G   +  +   + +G E              R       +   I+  D
Sbjct: 160 FIREGQSVAEVTIMLKNQGDEAYKPQEYGKSIVITRRFTKDGNSSYKIKSKD 211


>gi|288928512|ref|ZP_06422359.1| conserved hypothetical protein [Prevotella sp. oral taxon 317
          str. F0108]
 gi|288331346|gb|EFC69930.1| conserved hypothetical protein [Prevotella sp. oral taxon 317
          str. F0108]
          Length = 439

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 24/46 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ + I  +  +    +       + +G NG GKT++++++ +L
Sbjct: 1  MFLRRVTIDNYSCFKQFDVQLAEGINVIIGRNGAGKTSLIKSLVYL 46


>gi|317151859|ref|YP_004119907.1| DNA repair ATPase-like protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942110|gb|ADU61161.1| DNA repair ATPase-like protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 448

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 61/202 (30%), Gaps = 18/202 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +  F  +    L      T   G N  GK+ I+EA+  ++        +     R
Sbjct: 2   IRTIILENFMAHERTELELGPGITALTGANNTGKSAIVEALRCVAT-----NPAPNHCIR 56

Query: 67  IGSPSFFSTFARVEG-------MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            G+     T    +G        +  A   I L    +      ++   V   V  L + 
Sbjct: 57  HGAKEARVTLTMDDGAKVVWIRKKRSAGYEITLPGNSEPEEPFWKLQGKVPDEVRALLRL 116

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR-----RRMIDFERLMRGRNRLLT 174
             +         +  G   E    L+R    +            ++  + +++ R     
Sbjct: 117 DLVELETGEPIDVHVGNQREPVFLLNRPDSNVAAFFAASTESAHLLAMQNVLKARTTEAK 176

Query: 175 EGYFD-SSWCSSIEAQMAELGV 195
               +  +    IEA++  L  
Sbjct: 177 RRERELEARTRRIEAELDTLAA 198


>gi|209880004|ref|XP_002141442.1| structural maintenance of chromosomes protein [Cryptosporidium
          muris RN66]
 gi|209557048|gb|EEA07093.1| structural maintenance of chromosomes protein, putative
          [Cryptosporidium muris RN66]
          Length = 1268

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK + I  F+ Y     + FD      VG NG GK+NIL AI FL
Sbjct: 1  MYIKEVRIKGFKTYRDETVITFDPGCNCIVGLNGSGKSNILAAIQFL 47



 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 86/236 (36%), Gaps = 31/236 (13%)

Query: 157  RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ----MAELGVKINIARVEMINALSSLI 212
              + ++  L    N L T      +   +++ Q    + ++  +IN    ++   L    
Sbjct: 1007 HFIREYTDLSERHNELNTAMTSIQTLVETLDIQKEKTLLKIFEEINFYFNQVFKELIPNG 1066

Query: 213  MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
               +  +     KL  +   +        A ++   K L + + +D+ S  T IG     
Sbjct: 1067 DAKLVLKVSSQDKLENSNQSNINLSSDRQANQKRSKKNLSELKNIDNSSESTFIGIGMRV 1126

Query: 273  LIVDYCDKAITIAHGST-----------------GEQKVVLVGIFLAHARLISNTTGFAP 315
                  + +  I++GS                  G++ +V + +  A  R        AP
Sbjct: 1127 SFQGVPNSSPRISNGSNLAQNKTSSYYSLNQLSGGQKTLVALALLFAVHRA-----DPAP 1181

Query: 316  ILLLDEISAHLDEDKRNALFRIVTD--IGSQIFMTGTDKSVFDSLNETAKFMRISN 369
            + LLDEI A LD+  R ++  ++    + +Q  +T       D  +   KF ++S 
Sbjct: 1182 LYLLDEIDAALDDQYRLSVATLIQKQALSTQFIITTFRPQFIDIAD---KFFQVSQ 1234


>gi|19112184|ref|NP_595392.1| condensin subunit Cut3 [Schizosaccharomyces pombe 972h-]
 gi|13432112|sp|P41004|SMC4_SCHPO RecName: Full=Structural maintenance of chromosomes protein 4;
           AltName: Full=Cell untimely torn protein 3; AltName:
           Full=Chromosome segregation protein cut3
 gi|5441485|emb|CAB46756.1| condensin subunit Cut3 [Schizosaccharomyces pombe]
          Length = 1324

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 1   MTNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           +  R+ +  L ++ F++YA  ++   F    +  VG NG GK+N+++A+ F+    GFR 
Sbjct: 120 LPPRLVVYELRLTNFKSYAGTQIVGPFHPSFSSIVGPNGSGKSNVIDALLFVF---GFRA 176

Query: 59  ASYAD 63
           +    
Sbjct: 177 SKLRQ 181


>gi|294140432|ref|YP_003556410.1| SMC family protein [Shewanella violacea DSS12]
 gi|293326901|dbj|BAJ01632.1| SMC family protein [Shewanella violacea DSS12]
          Length = 1136

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 86/224 (38%), Gaps = 30/224 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++  S ++ F    +  +G NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDSTKIPFLNPLSAIIGPNGCGKSNIIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGS--------PSFFSTFARVEGM---EGLADISIKLETRDDR-SVRCLQINDV 108
            ADV   GS         S   +F  ++G    E  +   I ++ +  R       +N  
Sbjct: 61  MADVIFNGSTARRPVSVASVELSFENLDGRLMGEYSSYQEIAIKRQVSRDGDSSYFLNGQ 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               E R F++        R++ R 
Sbjct: 121 KCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQELRVFIEEAAG--ISRYKERR 177

Query: 160 IDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
            +   R+   R  L   G   +     +E ++AE   +    R 
Sbjct: 178 RETENRIRHTRENLDRLGDIRNELGRQLE-KLAEQASEAKQYRE 220



 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 41/184 (22%)

Query: 201  RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
            R   +  + + I+           +    G      D     L           RK+D  
Sbjct: 918  RQRELERIRAQIIHLGAINLAAIEEYEQQGERKNYLDSQDEDLTSALTSLEEAIRKIDKE 977

Query: 261  SRRT------------------LIGPHRSDLIVDYCD---------------KAITIAHG 287
            ++                    + G   + L + + D               K  TI   
Sbjct: 978  TKSRFKDTFDKVNKDLGILFPKVFGGGSATLALTHDDLLEAGVTIMARPPGKKNSTIHLL 1037

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-- 345
            S GE+ +  + +  A  RL       AP  +LDE+ A LD+   +   R+V ++   +  
Sbjct: 1038 SGGEKALTALSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVDRFCRLVKEMSQTVQF 1092

Query: 346  -FMT 348
             F++
Sbjct: 1093 IFIS 1096


>gi|156740860|ref|YP_001430989.1| chromosome segregation protein SMC [Roseiflexus castenholzii DSM
           13941]
 gi|156232188|gb|ABU56971.1| chromosome segregation protein SMC [Roseiflexus castenholzii DSM
           13941]
          Length = 1200

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 15/124 (12%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRA 59
           + ++ L I  F+ +A      F    T  VG NG GK+N+++AI + + G       R  
Sbjct: 1   MYLRRLEIQGFKTFAGHTLFEFQPGVTAVVGPNGSGKSNLVDAIRW-ALGEQHPGTLRCK 59

Query: 60  SYADVTRIGS-----PSFFSTFARVEGMEGLADI---SIKLETRDDRSV-RCLQINDVVI 110
              D+   G        F      ++  + L       + +  R  RS      IN   +
Sbjct: 60  RTEDLIFSGGGRRAPAGFAEVSLTIDNRDRLLPAPYSEVTITRRATRSGENEYFINRQRV 119

Query: 111 RVVD 114
           R+ D
Sbjct: 120 RLRD 123


>gi|126338810|ref|XP_001378464.1| PREDICTED: similar to structural maintenance of chromosomes 1B
          [Monodelphis domestica]
          Length = 1240

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          ++  L +  F+++     L      T  VG NG GK+N+++A+SF+   R    R  S  
Sbjct: 3  RLDRLLVENFKSWRGRQVLGPFRGFTCIVGPNGSGKSNVMDALSFVMGERTSNLRVKSLQ 62

Query: 63 DVTR 66
          ++  
Sbjct: 63 ELIH 66


>gi|83949541|ref|ZP_00958274.1| DNA repair protein RecN [Roseovarius nubinhibens ISM]
 gi|83837440|gb|EAP76736.1| DNA repair protein RecN [Roseovarius nubinhibens ISM]
          Length = 550

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRHLDIRDMLIIDRLELEFRPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDVVIRV 112
            G+       A  +  EG     +  +       S+   ++N    R 
Sbjct: 57  QGAEQG-EVLAEFDLPEGHGAHKVLEEAGLPGGESLILRRVNSRDGRK 103


>gi|331091448|ref|ZP_08340286.1| hypothetical protein HMPREF9477_00929 [Lachnospiraceae bacterium
          2_1_46FAA]
 gi|330404004|gb|EGG83554.1| hypothetical protein HMPREF9477_00929 [Lachnospiraceae bacterium
          2_1_46FAA]
          Length = 432

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +KI  L I   +   ++++       T+  G+N  GKT++L++I++   G  FR     +
Sbjct: 3  MKINKLEIENVKRIRAVKIEPTQNGLTVIGGNNNQGKTSVLDSIAWALGGENFR---PTE 59

Query: 64 VTRIGSP 70
            R GS 
Sbjct: 60 AMRHGSN 66


>gi|321260645|ref|XP_003195042.1| nuclear condensin complex protein [Cryptococcus gattii WM276]
 gi|317461515|gb|ADV23255.1| Nuclear condensin complex protein, putative [Cryptococcus gattii
          WM276]
          Length = 1213

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYA-SLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          ++I+ L +  F++Y     +  FD       G NG GK+NIL+AI F   ++  +  R  
Sbjct: 1  MRIEELILDGFKSYPVRTTISGFDESFNAITGLNGSGKSNILDAICFVLGITNMQSVRAN 60

Query: 60 SYADVT 65
          +  D+ 
Sbjct: 61 NLMDLI 66


>gi|315282233|ref|ZP_07870687.1| DNA repair protein RecN [Listeria marthii FSL S4-120]
 gi|313614135|gb|EFR87825.1| DNA repair protein RecN [Listeria marthii FSL S4-120]
          Length = 324

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 67/201 (33%), Gaps = 23/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F    SL L F    T+  G+ G GK+ I++A+  L  GRG      AD  R
Sbjct: 2   LQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRG-----SADFIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G               +     A +E     +D  + LE    RS +   +IN  ++  
Sbjct: 57  HGEERLELQGLFGLAEDNLACRNALLENGIDASDDMVVLERSLFRSGKNSCRINGKLVTT 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + ++   L           + +         RF    +     +++    +++ + + 
Sbjct: 117 VLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPALTKYQTNFREYQAIEKE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
                      +     +  Q
Sbjct: 177 WKNWTKNERELAQRLDMLRFQ 197


>gi|307213364|gb|EFN88816.1| Structural maintenance of chromosomes protein 1A [Harpegnathos
          saltator]
          Length = 1229

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
          +K + +  F++Y   L +      T  VG NG GK+N ++AISF+        R   +++
Sbjct: 5  LKHIEVDNFKSYKGKLVIGPLKCFTAVVGPNGSGKSNFMDAISFVMGEKTSSLRVKRFSE 64

Query: 64 VTR 66
          +  
Sbjct: 65 LIH 67


>gi|303245771|ref|ZP_07332054.1| SMC domain protein [Desulfovibrio fructosovorans JJ]
 gi|302493034|gb|EFL52899.1| SMC domain protein [Desulfovibrio fructosovorans JJ]
          Length = 392

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK L +  F++   +     +  TI +G NG GK+NIL A+SFL
Sbjct: 1  MLIKRLEVKGFKSLKDVVWEPGS-LTILIGPNGSGKSNILLALSFL 45


>gi|254475736|ref|ZP_05089122.1| chromosome segregation protein SMC [Ruegeria sp. R11]
 gi|214029979|gb|EEB70814.1| chromosome segregation protein SMC [Ruegeria sp. R11]
          Length = 1151

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 99/280 (35%), Gaps = 33/280 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+ ++      +  R   
Sbjct: 1   MRFSKLRLNGFKSFVDPTDLLIADGLTGVVGPNGCGKSNLLEALRWVMGENRPKAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+ S     F      ++  E LA         +++  R  R V    + N  
Sbjct: 61  MEDVIFAGTNSRPARNFAEVSLLIDNSERLAPSGFNENDNLEILRRITRDVGSAYKANGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQIAELINAKPKARRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINAL--SSLIMEYV 216
             E  ++ +N        D      + AQ+++L    +      ++   L  +  ++ Y 
Sbjct: 177 RHEAELKLKNTEANLLRVDDV-IEQLAAQLSQLSRQARQAQRYRDIGEQLRRAEGMLLYR 235

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +       +L     L  +  Q+  A     A ++    +
Sbjct: 236 RWREADDARLEAEDILRLRESQAAKAEALARASEIKRQEE 275


>gi|269977142|ref|ZP_06184115.1| DNA repair protein RecN [Mobiluncus mulieris 28-1]
 gi|269934445|gb|EEZ91006.1| DNA repair protein RecN [Mobiluncus mulieris 28-1]
          Length = 573

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 90/301 (29%), Gaps = 36/301 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L I      +   L F    T+  G+ G GKT +L ++++L  G   R +    +  
Sbjct: 2   IESLRIENLGTISHAELGFSPGFTVITGETGAGKTMLLTSLNWL-LGAQPRAS----LVA 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL---RIS 123
            GS S       +      A +       +D  V   +I     R    L          
Sbjct: 57  AGSESAVVEGTFLVDASAAAVVMEAGGVVEDGVVEAARIVPAQSRSKAHLGGRTVPAATL 116

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAID-------PRHRRRMIDFERLMRGRNRLLTEG 176
               +      G + + R  L       +         H+  +  + +          E 
Sbjct: 117 GTFGADLVSVHGQATQSR--LRGEKAQREAVDEFGGKTHQAALQTYAKA-------WEEW 167

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGK 235
              +      E        +    R E++  LS        ++  F  +  +++   + +
Sbjct: 168 GAATKDLEIWEENF-----ETRQRRREVLEHLSEEFQALAPEDGEFEELTATISRLSNVE 222

Query: 236 FDQS-----FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             +        AL ++   ++     +D   R       +   + D  D   + ++ S G
Sbjct: 223 NLRENATAALVALDDDSEIQVGANALVDIALRAMEKVTQQDGSLADLADMVASASY-SLG 281

Query: 291 E 291
           E
Sbjct: 282 E 282


>gi|195382721|ref|XP_002050077.1| GJ21940 [Drosophila virilis]
 gi|194144874|gb|EDW61270.1| GJ21940 [Drosophila virilis]
          Length = 1177

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 46/275 (16%), Positives = 97/275 (35%), Gaps = 33/275 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + +K L +  F++Y     +  FD + T   G NG GK+NIL++I F   +S  +  R +
Sbjct: 1   MYVKKLVLDGFKSYGRRTEIEGFDREFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +IS+  +       + L IN 
Sbjct: 61  ALQDLVYKNGQAGITKATVTIVFDNTNAQQCPPGYEKCREISVTRQVVVGGKNKFL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMID 161
            +++     +    +   V + + +           M+ +  L  +  A      +   D
Sbjct: 120 KLVQNKKVQDFFCSMQLNVNNPNFLIMQGKIQQVLNMKPKEVLSMVEEAAGTSLYKTKRD 179

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             + +  +     EG    +  + +E ++     K+   R            +    E  
Sbjct: 180 ATKTLIEK----KEGKVRETS-ALLEEEVLPKLDKLRKERTAY-QEYQKTCRDI---EFL 230

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            HI +S          QS  A +++   ++ + R+
Sbjct: 231 THIHISARYLKLRDALQSVEASEQKIESRIANCRE 265


>gi|15901065|ref|NP_345669.1| DNA repair protein RecN [Streptococcus pneumoniae TIGR4]
 gi|111657822|ref|ZP_01408539.1| hypothetical protein SpneT_02001004 [Streptococcus pneumoniae
           TIGR4]
 gi|14972682|gb|AAK75309.1| DNA repair protein RecN [Streptococcus pneumoniae TIGR4]
          Length = 555

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 77/208 (37%), Gaps = 25/208 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RS+  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL         + +              F D   + +   ++     + ++ + 
Sbjct: 117 LRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVK 196
              +        +    +E QMAE+   
Sbjct: 175 VLEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|327306415|ref|XP_003237899.1| nuclear condensin complex subunit Smc4 [Trichophyton rubrum CBS
           118892]
 gi|326460897|gb|EGD86350.1| nuclear condensin complex subunit Smc4 [Trichophyton rubrum CBS
           118892]
          Length = 1431

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 16/119 (13%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           R+ I  L ++ F++YA  +    F A  +  VG NG GK+N+++++ F+    GFR +  
Sbjct: 224 RMVITHLVLTNFKSYAGQQFVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASKM 280

Query: 62  AD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
                  +    +      F  VE               +  +++   S R  + N   
Sbjct: 281 RQGKISALIHNSANFPNLPFCEVEVHFQEIIDLPDGGHEVVPDSQLVVSRRAFRNNSSK 339


>gi|262395490|ref|YP_003287343.1| ATP-dependent endonuclease [Vibrio sp. Ex25]
 gi|262339084|gb|ACY52878.1| ATP-dependent endonuclease [Vibrio sp. Ex25]
          Length = 544

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + IS FR    L L FD   T  +G+N  GK+++L+A+S   P  G        +
Sbjct: 1   MRLERIEISGFRGIKRLSLSFDE-LTTLIGENTWGKSSLLDALSIALPANG-------SL 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            +     F   ++          I +  + +D   V+  +   +  
Sbjct: 53  YQFELKDFHVDYSISHPQTQHLQIIVCFKAQDKNEVKAGRYRRIKP 98


>gi|254511435|ref|ZP_05123502.1| chromosome segregation protein SMC [Rhodobacteraceae bacterium
           KLH11]
 gi|221535146|gb|EEE38134.1| chromosome segregation protein SMC [Rhodobacteraceae bacterium
           KLH11]
          Length = 1151

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 31/232 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+ ++      +  R  +
Sbjct: 1   MRFSKLKLTGFKSFVDPTDLIIADGLTGVVGPNGCGKSNLLEALRWVMGENRPKSMRGGA 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+      +F      ++  E LA         +++  R  R V    + N  
Sbjct: 61  MEDVIFAGAATRPARNFAEVVLTMDNSERLAPSGFNESDQLEIVRRITRDVGSAYKTNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++        + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVGQNRIAELINAKPRARRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSS 210
             E  ++ +         D      +  Q+A+L    +      E+   L  
Sbjct: 177 RHEAELKLKGTEANLTRVDDV-LEQLGGQLAQLARQARQAARYREIGEQLRQ 227


>gi|168493124|ref|ZP_02717267.1| DNA repair protein RecN [Streptococcus pneumoniae CDC3059-06]
 gi|225854674|ref|YP_002736186.1| DNA repair protein RecN [Streptococcus pneumoniae JJA]
 gi|183576669|gb|EDT97197.1| DNA repair protein RecN [Streptococcus pneumoniae CDC3059-06]
 gi|225724072|gb|ACO19925.1| DNA repair protein RecN [Streptococcus pneumoniae JJA]
          Length = 555

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 76/208 (36%), Gaps = 25/208 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RS+  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL         + +              F D   + +   ++     + ++ + 
Sbjct: 117 LRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVK 196
              +             +E QMAE+   
Sbjct: 175 VLEVKKNQQEHKERIEMLEFQMAEIEAA 202


>gi|15612528|ref|NP_224181.1| hypothetical protein jhp1463 [Helicobacter pylori J99]
 gi|4156085|gb|AAD07038.1| putative [Helicobacter pylori J99]
          Length = 367

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          IK + I  ++N+  L++        F G N  GKTN+LEA+ 
Sbjct: 2  IKSVEIENYKNFEHLKMENFKLINFFTGQNDAGKTNLLEALY 43


>gi|320588084|gb|EFX00559.1| chromosome segregation protein [Grosmannia clavigera kw1407]
          Length = 1209

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK L I  F++Y    +   F     + VG NG GK+N   AI F
Sbjct: 1  MYIKQLIIQGFKSYKDQTVMEPFSPGTNVIVGRNGSGKSNFFAAIRF 47



 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 97/286 (33%), Gaps = 28/286 (9%)

Query: 80   EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME 139
            E  +   +I+  LE    R  + LQ   ++ + + E  K++R   ++P           +
Sbjct: 895  ELEQRQQEIAANLERSQKRMEKNLQRRALLTQQLAEAAKNIRDLGVLPE------EAFEK 948

Query: 140  RRRFLDRMVFAIDPRHRRRMIDFERLMR-----------GRNRLLTEGYFDSSWCSSIEA 188
              R     +          +  +  + +            + +LL          +SIE 
Sbjct: 949  YERMDPARISKRLKNVLEALKKYRHVNKKAFEQYNSFTNQQEQLLGRRMELDESQASIEE 1008

Query: 189  QMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEY 247
             +A L    + +       +S       ++     H +L +    D +  Q       E 
Sbjct: 1009 LVAHLDRVKDESIERTFKQISKEFAMIFERLVPAGHGRLVIQRRDDRRGGQQDEEEDGEG 1068

Query: 248  AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
                 + R   S+   T +G   S       D+   +   S G++ +  + +  A     
Sbjct: 1069 EGDNDNRRTRRSVESYTGVGISVS-FNSKDMDEQQKVQQLSGGQKSLCALCLVFA----- 1122

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIV----TDIGSQIFMTG 349
               T  +P+++ DE+ A+LD   R A+  ++     D G+Q   T 
Sbjct: 1123 IQQTDPSPMVVFDEVDANLDAQYRTAVAGLLSSISQDAGTQFICTT 1168


>gi|300715707|ref|YP_003740510.1| RecF protein [Erwinia billingiae Eb661]
 gi|299061543|emb|CAX58657.1| Putative RecF protein [Erwinia billingiae Eb661]
          Length = 362

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK L+++ FR+   + L    Q  +  G NG GK+N+ +A+  L
Sbjct: 1  MTIKQLSLAGFRSIRDVELPLS-QLNVISGPNGCGKSNLYKAVRLL 45


>gi|171185896|ref|YP_001794815.1| SMC domain-containing protein [Thermoproteus neutrophilus V24Sta]
 gi|170935108|gb|ACB40369.1| SMC domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 795

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 93/295 (31%), Gaps = 51/295 (17%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRAS 60
           +I+ + +  FR+Y     L       +F G  G GKT+IL AI +   GR      R A 
Sbjct: 3   RIERIELENFRSYKGRHELRIGDAA-VFWGRIGAGKTSILYAIEYALFGRQLEVKERVAR 61

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL----QINDVVIRVVDEL 116
             D+    +          +G E L           +R V          D     + EL
Sbjct: 62  LVDLINADAQEARVALELRKGGELLRVERRLGRRGGERVVLHYGGVEHRGDQAEEKLAEL 121

Query: 117 NK-----HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRG- 168
                  + R+ ++       F   + ++R      +F ID      + +  +E+ +   
Sbjct: 122 LGADEDVYERLVYISHRTLEGFIYGTTQKRALSVDRLFGIDVVDGVIKAVSTYEKALLNV 181

Query: 169 ----RNRLLTEGYFD-------------------SSWCSSI---EAQMAELGVKINIARV 202
               R RL +   +                         ++   E  ++     +   R 
Sbjct: 182 AEDLRKRLASYEKYREVIKRYGGYRGVEARLGAVEQELEALKKREEALSAEAADLAKRRT 241

Query: 203 EMINALSSL---IMEYVQKENFPHIKLSLTGFLDGKFDQS-FCALKEEYAKKLFD 253
             +  +      ++EY + ++   +   L     G  D S    ++E   + L +
Sbjct: 242 AYLEKIRENEGLLLEYYRAKSELEV---LESDAGGDVDVSAVEKIREALREALEE 293


>gi|148985096|ref|ZP_01818335.1| DNA repair protein RecN [Streptococcus pneumoniae SP3-BS71]
 gi|225860959|ref|YP_002742468.1| DNA repair protein RecN [Streptococcus pneumoniae Taiwan19F-14]
 gi|298230889|ref|ZP_06964570.1| DNA repair protein RecN [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254300|ref|ZP_06977886.1| DNA repair protein RecN [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502799|ref|YP_003724739.1| DNA repair protein RecN [Streptococcus pneumoniae TCH8431/19A]
 gi|147922541|gb|EDK73659.1| DNA repair protein RecN [Streptococcus pneumoniae SP3-BS71]
 gi|225727073|gb|ACO22924.1| DNA repair protein RecN [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238394|gb|ADI69525.1| DNA repair protein RecN [Streptococcus pneumoniae TCH8431/19A]
 gi|301800129|emb|CBW32733.1| putative DNA repair protein [Streptococcus pneumoniae OXC141]
          Length = 555

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 77/208 (37%), Gaps = 25/208 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RS+  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL         + +              F D   + +   ++     + ++ + 
Sbjct: 117 LRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVK 196
              +        +    +E QMAE+   
Sbjct: 175 VLEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|289063426|ref|NP_001165905.1| structural maintenance of chromosomes protein 1A [Xenopus laevis]
 gi|29336591|sp|O93308|SMC1A_XENLA RecName: Full=Structural maintenance of chromosomes protein 1A;
           Short=SMC protein 1A; Short=SMC-1A; Short=xSMC1
 gi|3328231|gb|AAC26807.1| 14S cohesin SMC1 subunit [Xenopus laevis]
          Length = 1232

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFHRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--------- 111
           +     +G P+    F  +   E   +  +             +IN+ V++         
Sbjct: 64  LIHGAPVGKPAANRAFVSMVYSEDSGEEKV-FSRVIVGGSSEYKINNKVVQLSEYSDSLE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|308068622|ref|YP_003870227.1| Chromosome partition protein smc [Paenibacillus polymyxa E681]
 gi|305857901|gb|ADM69689.1| Chromosome partition protein smc [Paenibacillus polymyxa E681]
          Length = 1189

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + ++ F+++A    + F    T  VG NG GK+NI + I ++      +  R   
Sbjct: 1   MFLKRIELAGFKSFADKTEMEFVRGITAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             D+   GS +     +  V       D ++ L+  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDARKAVNYGEVSLTLDNEDQALPLDFGEVTVTRRVHRSGDSEYFINRQSCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LRD 123


>gi|269859424|ref|XP_002649437.1| chromosome segregation protein cut14 [Enterocytozoon bieneusi H348]
 gi|220067200|gb|EED44667.1| chromosome segregation protein cut14 [Enterocytozoon bieneusi H348]
          Length = 935

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 9/128 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRA 59
           + IK + +  F+ Y    +    D       G NGVGK+N ++AI F       +  R +
Sbjct: 1   MFIKEIIMDGFKCYEEKTIMSNLDRFFNAIKGMNGVGKSNFIDAIIFCLNLDSIKSMRIS 60

Query: 60  SYADVTRIGSPSFFSTFARVEG-MEGLADISIKLETRDDRSVR-CLQINDVVI--RVVDE 115
           S  ++  I   S   T   V   + G  +++  +    D +++   ++N        +D 
Sbjct: 61  SIHELININKLSASVTLKIVNVPIYGNIEVTKTITKMKDNTIKTTFKLNGSNCLRSTIDN 120

Query: 116 LNKHLRIS 123
           L K + IS
Sbjct: 121 LVKQMGIS 128


>gi|46580431|ref|YP_011239.1| hypothetical protein DVU2024 [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|46449849|gb|AAS96499.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
          Hildenborough]
 gi|311233600|gb|ADP86454.1| hypothetical protein Deval_1294 [Desulfovibrio vulgaris RCH1]
          Length = 354

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ L +     +  L L    +  + +G+NG GKT++L+A   L  G
Sbjct: 2  IERLELRNLTVFTGLTLELSPKINVIIGENGTGKTHLLKAAYGLCAG 48


>gi|150016056|ref|YP_001308310.1| chromosome segregation protein SMC [Clostridium beijerinckii NCIMB
           8052]
 gi|149902521|gb|ABR33354.1| chromosome segregation protein SMC [Clostridium beijerinckii NCIMB
           8052]
          Length = 1185

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L I  F+++A    L F    T  VG NG GK+NI +A+ ++   +     R   
Sbjct: 1   MFLKSLEIRGFKSFADKTELKFKQGVTAVVGPNGSGKSNISDAVRWVLGEQSVKVLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+              ++  +              R  R       IN+   R
Sbjct: 61  MEDVIFAGTQFRKPVGLAQVSLTLDNSDEKLATEYNEVVVSRRIFRSGESEYLINNSKCR 120

Query: 112 VVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLD 145
           + D +N  +                ++ I SG   +RR  L+
Sbjct: 121 LKDVINLFMDTGIGKEGYSLIGQGKIEAILSGKPEDRRNLLE 162


>gi|301062702|ref|ZP_07203319.1| RecF/RecN/SMC N-terminal domain protein [delta proteobacterium
          NaphS2]
 gi|300443182|gb|EFK07330.1| RecF/RecN/SMC N-terminal domain protein [delta proteobacterium
          NaphS2]
          Length = 439

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          I  + ISE+++   + +      +I VG NG GK+N L+A+  LS     R    A
Sbjct: 2  INRIKISEYKSLEDVEINLSP-LSILVGPNGAGKSNFLDALQLLSKIATSRTLKEA 56


>gi|156098811|ref|XP_001615421.1| structural maintenance of chromosome protein [Plasmodium vivax
           SaI-1]
 gi|148804295|gb|EDL45694.1| structural maintenance of chromosome protein, putative [Plasmodium
           vivax]
          Length = 1613

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 69/190 (36%), Gaps = 23/190 (12%)

Query: 7   IKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYAD 63
           IK+L +  F++Y    +    ++ T  +G NG GK+NI++ I F+   P +  R  S   
Sbjct: 230 IKYLVVCNFKSYEGENIIGPFSKFTAIIGPNGSGKSNIMDCICFVLGIPNKCLRVKSMRH 289

Query: 64  VTRIGSPSFFST------FARVEGMEGLADISIKLETRDD---RSVRCLQINDVVIRVVD 114
           +                 + ++       ++ + +E +     R V    I+D  +   +
Sbjct: 290 LIHHKENEKVEVLKRRKCYVKLILERNKENVQMNVEIKRTLNYRGVSNYYIDDKPVEHRE 349

Query: 115 ELN---------KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            ++         K          ++ + +    E  + L+ +  + +  + +   D +  
Sbjct: 350 YISFLKKNRIETKTKTCLIFQGDIEEVINKKPNELAKLLEHISGSDE--YEQVYEDMKEK 407

Query: 166 MRGRNRLLTE 175
           ++ +      
Sbjct: 408 LKEKQMACKS 417



 Score = 38.0 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 275  VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
            + Y +             S GE+ +  + +  +  + IS        ++LDE+ A++D  
Sbjct: 1501 IRYNNMPPMKRFFEISELSGGEKSMSALALIFSIQKYIS-----NSFIILDEVDANMDPI 1555

Query: 330  KRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            K ++L R +  I SQ+ +    +  F  
Sbjct: 1556 KMSSLARYLNSINSQVIVISLKEKFFSK 1583


>gi|220927524|ref|YP_002504433.1| SMC domain protein [Clostridium cellulolyticum H10]
 gi|219997852|gb|ACL74453.1| SMC domain protein [Clostridium cellulolyticum H10]
          Length = 985

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 9/116 (7%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQ------HTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           K+  + +  FR +     + F  +           G NG GKT +++A  +L+ G+  R 
Sbjct: 3   KLSKIELDNFRVFKGHKTIEFLNRTGSPYNFICIYGSNGSGKTALVDAFEWLATGKLHR- 61

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
              +D+   G     +    +E  +     ++     D          ++ IR   
Sbjct: 62  -IDSDMQVQGKSYEGAILTHIEAYDNDQRANVVAHFIDSNRDTLQYKRNIRIRRDS 116


>gi|15903127|ref|NP_358677.1| DNA repair protein RecN [Streptococcus pneumoniae R6]
 gi|116516837|ref|YP_816533.1| DNA repair protein RecN [Streptococcus pneumoniae D39]
 gi|148989221|ref|ZP_01820601.1| DNA repair protein RecN [Streptococcus pneumoniae SP6-BS73]
 gi|149002568|ref|ZP_01827500.1| DNA repair protein RecN [Streptococcus pneumoniae SP14-BS69]
 gi|168491123|ref|ZP_02715266.1| DNA repair protein RecN [Streptococcus pneumoniae CDC0288-04]
 gi|237649513|ref|ZP_04523765.1| DNA repair protein RecN [Streptococcus pneumoniae CCRI 1974]
 gi|237822545|ref|ZP_04598390.1| DNA repair protein RecN [Streptococcus pneumoniae CCRI 1974M2]
 gi|15458707|gb|AAK99887.1| DNA repair and genetic recombination [Streptococcus pneumoniae R6]
 gi|116077413|gb|ABJ55133.1| DNA repair protein RecN [Streptococcus pneumoniae D39]
 gi|147759179|gb|EDK66172.1| DNA repair protein RecN [Streptococcus pneumoniae SP14-BS69]
 gi|147925199|gb|EDK76278.1| DNA repair protein RecN [Streptococcus pneumoniae SP6-BS73]
 gi|183574375|gb|EDT94903.1| DNA repair protein RecN [Streptococcus pneumoniae CDC0288-04]
          Length = 555

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 77/208 (37%), Gaps = 25/208 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RS+  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL         + +              F D   + +   ++     + ++ + 
Sbjct: 117 LRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVK 196
              +        +    +E QMAE+   
Sbjct: 175 VLEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|70953033|ref|XP_745644.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56526032|emb|CAH82054.1| hypothetical protein PC000153.05.0 [Plasmodium chabaudi chabaudi]
          Length = 306

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYA 62
           I+ L +  F++Y+ +++   F  + +  VG NG GK+NI++A+ F+     +  R+   +
Sbjct: 67  IEKLILENFKSYSGVKIIGPFYKKFSCIVGPNGSGKSNIIDAMLFVFGRRAKKIRQNKLS 126

Query: 63  DVTR 66
           D+  
Sbjct: 127 DLIH 130


>gi|302343404|ref|YP_003807933.1| chromosome segregation protein SMC [Desulfarculus baarsii DSM 2075]
 gi|301640017|gb|ADK85339.1| chromosome segregation protein SMC [Desulfarculus baarsii DSM 2075]
          Length = 1188

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 90/270 (33%), Gaps = 40/270 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +K+K L IS F+++A    L F       VG NG GK+N+++AI ++      R  R  +
Sbjct: 1   MKVKRLEISGFKSFAQRAVLDFPDGLCAVVGPNGCGKSNVVDAIRWVLGEQSARQLRGQA 60

Query: 61  YADVTRIGSPSF-----------FSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDV 108
             DV   G+ S            F     +   +      I +  R  R+     QIN  
Sbjct: 61  MEDVIFNGAQSHKPTGLAEVSIVFENAGTISAPQYADLAEIMVTRRLYRNGESDYQINRR 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             R+ D         L            +         ERR +++             + 
Sbjct: 121 PCRLKDIQQLLMDTGLGNRAYAIIEQGKVASFIDSRPEERRLWVEE---------AAGIT 171

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
            ++     + + L +          ++  + E+  ++  AR++        +     ++ 
Sbjct: 172 RYK---NQKKQSLKKMEGARENLDRLQDIIIEVDSQM--ARLQ--RQAKKAMRHKELRDK 224

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
              + L+L  F      Q+   +  E A  
Sbjct: 225 IRELDLALGSFEFAALGQAHGEVSAELAAA 254


>gi|219113727|ref|XP_002186447.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583297|gb|ACI65917.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1099

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 11/98 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y+ +      +  + +G NG GK++IL AI F   G          + R
Sbjct: 23  ITRIKLHNFLTYSDVEFRPGPRLNMVIGPNGTGKSSILNAICFGLGGE------PKLLGR 76

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
                 F    +       A+I I+L     +     +
Sbjct: 77  ADDARAFIAHGKDH-----AEIEIELAPLPGKGTHVFR 109


>gi|145301156|ref|YP_001143997.1| hypothetical protein ASA_4333 [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142853928|gb|ABO92249.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
          salmonicida A449]
          Length = 483

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 5  IKIKFLNISE-FRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          +K+  L+I   F+N  ++++ FD     T+ VG NG GK+N+LEA+
Sbjct: 1  MKVNNLHIRSRFKNLENVKVDFDENHLMTVVVGRNGSGKSNVLEAL 46


>gi|307151040|ref|YP_003886424.1| exonuclease SbcC [Cyanothece sp. PCC 7822]
 gi|306981268|gb|ADN13149.1| exonuclease SbcC [Cyanothece sp. PCC 7822]
          Length = 1007

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 9  FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L +  F +Y    L F   HT    G NG GK+++LE I++   G   R  +  DV   
Sbjct: 5  QLTLKNFLSYREASLDFRGLHTACVCGANGAGKSSLLEGITWAIWGES-RANTEDDVIHT 63

Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDD 97
          G+ +    F  +   +    I  +   +  
Sbjct: 64 GAENVRVDFEFICNNQQYRIIRTRQRGKGG 93


>gi|169833042|ref|YP_001694639.1| DNA repair protein RecN [Streptococcus pneumoniae Hungary19A-6]
 gi|168995544|gb|ACA36156.1| DNA repair protein RecN [Streptococcus pneumoniae Hungary19A-6]
          Length = 555

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RS+  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL         + +              F D   + +   ++     + ++ + 
Sbjct: 117 LRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
              +        +    +E QMAE+      A
Sbjct: 175 VLEVKKNQQEHKARIEMLEFQMAEIEAANLQA 206


>gi|148241436|ref|YP_001226593.1| chromosome segregation ATPase [Synechococcus sp. RCC307]
 gi|147849746|emb|CAK27240.1| Chromosome segregation ATPase [Synechococcus sp. RCC307]
          Length = 1198

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
          I  ++++ F+++  S+ +  +   T+  G NG GK+NIL+ I F       R      + 
Sbjct: 4  IDQVSLTHFKSFGGSVTIPLEPGFTVVTGPNGSGKSNILDGILFCLGLASSRGMRAERL- 62

Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRD 96
              P   +  A  +G    A +S++ + R 
Sbjct: 63 ----PDLINNNALKQGKASEASVSVRFDLRG 89


>gi|145524291|ref|XP_001447973.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415506|emb|CAK80576.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1153

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGR----GFRR 58
          + IK + I  F++YA   +    D +     G NG GK+NIL+AI F           R 
Sbjct: 1  MWIKEIIIEGFKSYAQRTVITSLDPEFNAITGLNGSGKSNILDAILFCLGLSKEYDTLRI 60

Query: 59 ASYADVT 65
              ++ 
Sbjct: 61 KKLQELI 67


>gi|315648180|ref|ZP_07901281.1| chromosome segregation protein SMC [Paenibacillus vortex V453]
 gi|315276826|gb|EFU40169.1| chromosome segregation protein SMC [Paenibacillus vortex V453]
          Length = 1189

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + ++ F+++A    + F    T  VG NG GK+NI + I ++      +  R   
Sbjct: 1   MFLKRIELAGFKSFADKTEMEFVRGITAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +     F  V       D  + L+  +    R +  + 
Sbjct: 61  MEDIIFAGSDARKAVNFGEVSLTLDNEDHVLPLDFNEVTVTRRVHRSG 108


>gi|309808647|ref|ZP_07702539.1| chromosome partition protein smc family protein [Lactobacillus
           iners LactinV 01V1-a]
 gi|308168121|gb|EFO70247.1| chromosome partition protein smc family protein [Lactobacillus
           iners LactinV 01V1-a]
          Length = 338

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 26/193 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L ++ F+++A    + F+   T  VG NG GK+N+ EAI ++      +  R  +
Sbjct: 1   MPLKQLVLNGFKSFADKTTINFNKGITGIVGPNGSGKSNVTEAIRWVMGENSAKALRGEN 60

Query: 61  YADVTRIGSP--------SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             D+   GS              F   +    L    + +  R  RS      IN+  +R
Sbjct: 61  MRDIIFAGSEFRGPLNKAEVCLIFDNYDRQLHLDSDKVAIMRRILRSGDSEYFINNQSVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMID 161
           + D         L+++         +D+I +  + +RR   +    V        ++++ 
Sbjct: 121 LKDIRTLFVDSGLSQNSLAIISQGKVDQILNSQAEDRRYIFEEAAGVLHFKQ---QKLVA 177

Query: 162 FERLMRGRNRLLT 174
            ++L    N L+ 
Sbjct: 178 LKKLDETNNNLIR 190


>gi|259485548|tpe|CBF82662.1| TPA: DNA repair protein Rad18, putative (AFU_orthologue;
           AFUA_3G05440) [Aspergillus nidulans FGSC A4]
          Length = 1146

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 26/176 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +   ++         VG NG GK+ +L AI+    G+     R  S   
Sbjct: 106 LERVECYNFMCHDHFQVELGPLINFIVGKNGSGKSAVLTAITLCLGGKASTTNRGQSLKS 165

Query: 64  VTRIGSPSFFSTFARVEGMEG---------LADISIKLETRDDRSVRCLQIND----VVI 110
             + G  S           +G            +          S +    N        
Sbjct: 166 FIKEGKESATIIVRIKNQGDGAYLPDDLGKSIIVERHFSKSGASSFKIKADNGRIFSTKR 225

Query: 111 RVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR 156
             +D +  H  + +  P        +   + S    E+ +F      +  +D  +R
Sbjct: 226 TELDAIIDHFTLQFENPMNVLSQDMARQFLSSSSPAEKYKFFVKGVQLEQLDQDYR 281


>gi|194333304|ref|YP_002015164.1| chromosome segregation protein SMC [Prosthecochloris aestuarii DSM
           271]
 gi|194311122|gb|ACF45517.1| chromosome segregation protein SMC [Prosthecochloris aestuarii DSM
           271]
          Length = 1186

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 77/215 (35%), Gaps = 33/215 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           + +  + +  F+++A  + + FD   T  VG NG GKTN+++AI   L   +    R   
Sbjct: 1   MYLSKIELFGFKSFAHRITIRFDKGLTAIVGPNGCGKTNVVDAIRWVLGEQKSALLRSTK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             ++   G+      S       +E    +  I    + +  R  RS      +N V  R
Sbjct: 61  MENIIFNGTRKLKPLSLSEVSLTIENTRNVLPIEYSEVTITRRIYRSGESEYLLNQVPCR 120

Query: 112 VVDELNKHLRISWLVPSMD--------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D L+          +           I S  S ER R L+             +  ++
Sbjct: 121 LKDILDLFADTGMGSDAYSVIELKMIEEIISNKSDERLRLLEEAAG---------ITRYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198
           +  +   R L     D      ++  ++E+  K+ 
Sbjct: 172 QRRKQTFRQLEITARD---LERVDDVLSEVSKKVR 203


>gi|333030106|ref|ZP_08458167.1| DNA repair protein RecN [Bacteroides coprosuis DSM 18011]
 gi|332740703|gb|EGJ71185.1| DNA repair protein RecN [Bacteroides coprosuis DSM 18011]
          Length = 553

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 72/207 (34%), Gaps = 15/207 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L+I  +     L + FDA  ++  G+ G GK+ IL AI+ L    +  +  RR    
Sbjct: 2   LRSLHIKNYALIEELHMNFDAGFSVITGETGAGKSIILGAINLLLGQRADVKSIRRGEKK 61

Query: 63  DVTR--IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDELNK 118
            V       S     ++ +   +E   +  ++ E +     R    +    +  + EL +
Sbjct: 62  CVIEAVFDISKYNMKSYFKENELEYDDECILRREVQSSGKSRAFINDSPSSVSQIRELGE 121

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRR---MIDFERLMRGRNRLL 173
            L    +      +       +   LD +     I   + +        E+ ++    L 
Sbjct: 122 QL--IDIHSQHQNLLLNKEGFQLNVLDIIAGNEQILSEYVQVYTEWKALEKSLKKLTDLA 179

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIA 200
            +   D  +      Q AE  +K+   
Sbjct: 180 EQSKADEDYIRFQLEQFAEANLKVGEK 206


>gi|300783237|ref|YP_003763528.1| ATPase [Amycolatopsis mediterranei U32]
 gi|299792751|gb|ADJ43126.1| ATPase [Amycolatopsis mediterranei U32]
          Length = 385

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 88/311 (28%), Gaps = 50/311 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  +R+   L L      T+  G NG GK+++  A+  L+     R  + A + R
Sbjct: 2   LTTLAVENYRSLRDLVLPLS-GLTVVTGPNGSGKSSLYRALRLLADAS--RNGAVAALAR 58

Query: 67  IG----------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            G                   RV+G      + ++L          L +  + +   + L
Sbjct: 59  EGGLPSTLWAGPENGVRRGTTRVQGKVHTKAVGLRLGFAGGEFGYALDL-GLPVPGKNTL 117

Query: 117 NKHLR-----ISW----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
                       W    L PS      G    R R         D R + R+ D      
Sbjct: 118 FNLDPEFKREAVWSGPVLRPSALLADRGGPSVRTRVASGAWG--DERFKIRLTD------ 169

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                +   + D   C     ++  L  +I   R            ++ + +     + S
Sbjct: 170 ----SMLSEFADPRACP----ELVVLRERIRSWR----------FYDHFRTDADAPARQS 211

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
             G            L       +  GR  +         P  + L V   D  +++   
Sbjct: 212 RIGTRTPVLAHDGADLAAALQTIIEVGRTEELAEVLDAAFPGSA-LEVHSQDGLLSVQFR 270

Query: 288 STGEQKVVLVG 298
             G  + +   
Sbjct: 271 QHGLLRALSAA 281


>gi|307726822|ref|YP_003910035.1| ATP-dependent OLD family endonuclease [Burkholderia sp. CCGE1003]
 gi|307587347|gb|ADN60744.1| ATP-dependent OLD family endonuclease [Burkholderia sp. CCGE1003]
          Length = 634

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +KI+ + I  FR    + + FD+  T F+G NG GK+ +L A+ +   G+
Sbjct: 1  MKIQSVRIRNFRALRDVTIPFDS-VTTFIGPNGAGKSTVLRALDWYFNGK 49


>gi|148993812|ref|ZP_01823214.1| DNA repair protein RecN [Streptococcus pneumoniae SP9-BS68]
 gi|168489030|ref|ZP_02713229.1| DNA repair protein RecN [Streptococcus pneumoniae SP195]
 gi|147927637|gb|EDK78662.1| DNA repair protein RecN [Streptococcus pneumoniae SP9-BS68]
 gi|183572356|gb|EDT92884.1| DNA repair protein RecN [Streptococcus pneumoniae SP195]
          Length = 555

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RS+  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL         + +              F D   + +   ++     + ++ + 
Sbjct: 117 LRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
              +        +    +E QMAE+      A
Sbjct: 175 VLEVKKNQQEHKARIEMLEFQMAEIEAANLQA 206


>gi|119579378|gb|EAW58974.1| SMC2 structural maintenance of chromosomes 2-like 1 (yeast),
          isoform CRA_b [Homo sapiens]
          Length = 1147

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK + +  F++YA    +  FD       G NG GK+NIL++I FL
Sbjct: 1  MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFL 48


>gi|114625956|ref|XP_001137218.1| PREDICTED: structural maintenance of chromosomes 2-like 1 isoform
          7 [Pan troglodytes]
          Length = 1147

 Score = 53.0 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK + +  F++YA    +  FD       G NG GK+NIL++I FL
Sbjct: 1  MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFL 48


>gi|332879181|ref|ZP_08446879.1| RecF/RecN/SMC protein [Capnocytophaga sp. oral taxon 329 str.
          F0087]
 gi|332682839|gb|EGJ55738.1| RecF/RecN/SMC protein [Capnocytophaga sp. oral taxon 329 str.
          F0087]
          Length = 593

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGR 54
          + +  L+IS+FR +  + L F +   I +G+N  GKT I++A+   L  G+
Sbjct: 1  MYLSQLHISKFRVFDDITLYFKSGINILIGENNSGKTAIIDALRICLGCGK 51


>gi|315604119|ref|ZP_07879185.1| DNA repair protein RecN [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313825|gb|EFU61876.1| DNA repair protein RecN [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 564

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 86/266 (32%), Gaps = 33/266 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L+I+     AS  + F    T+  G+ G GKT +L ++  L   R     +   + R
Sbjct: 8   IESLDIANLGVIASAHVDFAPGLTVVTGETGAGKTMVLSSLQLLLGAR-----ADTALVR 62

Query: 67  IGSPSFFS---------TFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            G  S              A VE + G+ +   + +      + R              L
Sbjct: 63  SGEESLSVDGIFSVPADIAAAVEELGGVVENGELIVGRSVRAAGRSRAHLGSRPVPASAL 122

Query: 117 NKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           +  +  +  +    D+I       +RR LD+                  L++       E
Sbjct: 123 SDIVGAMVTIHGQADQIRLTGEAAQRRALDQFGG----------AQHRALLKEYRSAFRE 172

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEM--INALSSLIMEYVQKENFPHIKLSLTGFLD 233
                    S+    +E   ++   R  +  I+ L   + E  ++      +L+    L 
Sbjct: 173 AVEVKRRLDSLRFDASERAEELEDLRSAIAQIDELDPHVGEE-EELTREAARLTNVEDLR 231

Query: 234 GKFDQSFCAL----KEEYAKKLFDGR 255
              +Q    L    + +YA  L   R
Sbjct: 232 ALLEQCVTCLRGDERSDYAGALEATR 257


>gi|225685108|gb|EEH23392.1| dna repair protein rad18 [Paracoccidioides brasiliensis Pb03]
          Length = 1161

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 50/176 (28%), Gaps = 26/176 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +    +         VG NG GK+ IL AI+    G+     R  S   
Sbjct: 119 IERVECYNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTAITLCLGGKASVTNRGQSLKS 178

Query: 64  VTRIGSPSFFSTFARVEGMEGLAD---------ISIKLETRDDRSVRCLQINDVVIRV-- 112
             + G  S           +   +         I            +    N  V+    
Sbjct: 179 FIKEGKDSATIVVRIKNKGDSAYNPNEFGDSIIIERHFSRTGASGFKIKSSNGRVVSTKK 238

Query: 113 --VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR 156
             +D +  +  +    P        +   + +    E+ +F      +  +D  +R
Sbjct: 239 SELDSITDYYALQIDNPMNVLSQDMARQFLSNSSPSEKYKFFLKGVQLEQLDQDYR 294


>gi|121595268|ref|YP_987164.1| hypothetical protein Ajs_2952 [Acidovorax sp. JS42]
 gi|120607348|gb|ABM43088.1| hypothetical protein Ajs_2952 [Acidovorax sp. JS42]
          Length = 683

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-----QHTIFVGDNGVGKTNILEAISFLSPGR 54
          + I  + +  F++Y      F          +  G NG GKT+ILEA+     G+
Sbjct: 1  MWIAKIELFNFKSYQHQLFEFPQPRAGRNIVLIGGMNGYGKTSILEALYLGLYGK 55


>gi|90416523|ref|ZP_01224454.1| hypothetical protein GB2207_04957 [marine gamma proteobacterium
           HTCC2207]
 gi|90331722|gb|EAS46950.1| hypothetical protein GB2207_04957 [marine gamma proteobacterium
           HTCC2207]
          Length = 1165

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTSVHFPSNLCAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS              F ++  R+ G     A+I IK +   D       +N 
Sbjct: 61  MTDVIFNGSGGRKPVGQASIELIFDNSEGRIVGEYASYAEIGIKRKVTRDGQSN-YYLNG 119

Query: 108 VVIRVVD 114
              R  D
Sbjct: 120 SKCRRRD 126



 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 70/206 (33%), Gaps = 43/206 (20%)

Query: 172  LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            LL     D+      E Q+  +G +I        N L  + +  + +      +      
Sbjct: 935  LLENLAEDAEMVD-WEEQLQLIGNRI--------NRLGPINLAAIDEYKIESERKDYLDT 985

Query: 232  LDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRRT------LIGPHRSDLIVDYCD- 279
             + + +++   L+    K   + R       D ++         L G   + L +   D 
Sbjct: 986  QNAELEEAMETLRTAIQKIDRETRTRFKETFDLVNTNIQELFPKLFGGGHAYLELTGDDL 1045

Query: 280  --------------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
                          K  +I   S GE+ +  + +  A  RL       AP  +LDE+ A 
Sbjct: 1046 LDTGVTLMARPPGKKNASIQLLSGGEKALTAIAMVFAIFRL-----NPAPFCMLDEVDAP 1100

Query: 326  LDEDKRNALFRIVTDIGSQI---FMT 348
            LD+        +V ++  Q+   F+T
Sbjct: 1101 LDDANVGRYAAMVKEMSDQVQFIFIT 1126


>gi|315613294|ref|ZP_07888203.1| DNA repair protein RecN [Streptococcus sanguinis ATCC 49296]
 gi|315314529|gb|EFU62572.1| DNA repair protein RecN [Streptococcus sanguinis ATCC 49296]
          Length = 555

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 77/212 (36%), Gaps = 25/212 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNLMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RSV  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFEEQGLEMGDEIIIRREILQNGRSVSRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL    +    D+               F D     +   ++     + ++ + 
Sbjct: 117 LRAIGQHL--VDIHGQHDQEELMRPQLHIQMLDEFGDAAFLDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                       +    +E QMAE+      A
Sbjct: 175 VLEAKKNQQEHKARIEMLEFQMAEIEAANLQA 206


>gi|307188414|gb|EFN73171.1| Structural maintenance of chromosomes protein 5 [Camponotus
           floridanus]
          Length = 1047

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 9/131 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  Y S  +       + VG NG GK+ I+ AI     GR     R     +
Sbjct: 10  ITRIILENFVTYDSAIVNPTRYLNVIVGPNGSGKSTIVAAIVLGLGGRPNIIGRALHIGE 69

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             + G  S       ++       + +++ T++  S   +       + V E    L I 
Sbjct: 70  YVKYGCQSA-KIEIHLKNGNKRDHVIVRIFTKEGTSKWMINGAQSSAKAVQEFTSSLNIQ 128

Query: 124 W-----LVPSM 129
                  +P  
Sbjct: 129 VDNLCQFLPQD 139


>gi|302498499|ref|XP_003011247.1| hypothetical protein ARB_02529 [Arthroderma benhamiae CBS 112371]
 gi|291174796|gb|EFE30607.1| hypothetical protein ARB_02529 [Arthroderma benhamiae CBS 112371]
          Length = 1431

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 16/119 (13%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           R+ I  L ++ F++YA  +    F A  +  VG NG GK+N+++++ F+    GFR +  
Sbjct: 224 RMVITHLVLTNFKSYAGQQFVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASKM 280

Query: 62  AD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
                  +    +      F  VE               +  +++   S R  + N   
Sbjct: 281 RQGKISALIHNSANFPNLPFCEVEVHFQEVIDLPDGGHEVVPDSQLVVSRRAFRNNSSK 339


>gi|209542252|ref|YP_002274481.1| SMC domain-containing protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209529929|gb|ACI49866.1| SMC domain protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 1511

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 24/161 (14%)

Query: 9   FLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYADV 64
            L I+ F+++A  + +      T  VG NG GK+N++EA+ +    S  R  R     D+
Sbjct: 7   RLRIAGFKSFADPVAVDILPGLTGIVGPNGCGKSNVVEALRWAMGESSARSLRGGEMDDL 66

Query: 65  TRIGSPS-----FFSTFARVEGMEGLADI------SIKLETRDDRS-VRCLQINDVVIRV 112
              G+ +            +EG  G+A         +++  R +R      ++N   IR 
Sbjct: 67  IFAGTAARAARNLAEVTLTLEGTTGIAPPPLHDQDELQISRRAERGAGSDYRVNSKPIRA 126

Query: 113 VD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLD 145
            D      +L    R S +V    +  + +    ERR  L+
Sbjct: 127 RDVQTLFADLASGARSSAMVSQGRVSALVNARPEERRSILE 167


>gi|162147621|ref|YP_001602082.1| chromosome segregation protein SMC [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786198|emb|CAP55780.1| putative chromosome segregation protein SMC [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1511

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/161 (22%), Positives = 65/161 (40%), Gaps = 24/161 (14%)

Query: 9   FLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYADV 64
            L I+ F+++A  + +      T  VG NG GK+N++EA+ +    S  R  R     D+
Sbjct: 7   RLRIAGFKSFADPVAVDILPGLTGIVGPNGCGKSNVVEALRWAMGESSARSLRGGEMDDL 66

Query: 65  TRIGSPS-----FFSTFARVEGMEGLADI------SIKLETRDDRS-VRCLQINDVVIRV 112
              G+ +            +EG  G+A         +++  R +R      ++N   IR 
Sbjct: 67  IFAGTAARAARNLAEVTLTLEGTTGIAPPPLHDQDELQISRRAERGAGSDYRVNSKPIRA 126

Query: 113 VD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLD 145
            D      +L    R S +V    +  + +    ERR  L+
Sbjct: 127 RDVQTLFADLASGARSSAMVSQGRVSALVNARPEERRSILE 167


>gi|57635344|emb|CAI44011.1| putative RecF protein [Salmonella enterica subsp. enterica
          serovar Typhimurium]
          Length = 276

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
            RI I+++ I  FR+   + L       I  G NG GK+NI  AI  L+
Sbjct: 16 AGRIMIQYIRIQNFRSVKDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 64


>gi|148232365|ref|NP_001080490.1| structural maintenance of chromosomes 1A [Xenopus laevis]
 gi|28436771|gb|AAH46691.1| Smc1l1 protein [Xenopus laevis]
          Length = 1232

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFHRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--------- 111
           +     +G P+    F  +   E   +  +             +IN+ V++         
Sbjct: 64  LIHGAPVGKPAANRAFVSMVYSEDSGEEKV-FSRVIVGGSSEYKINNKVVQLSEYSDALE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|315047560|ref|XP_003173155.1| chromosomes protein 4 structural maintenance [Arthroderma gypseum
           CBS 118893]
 gi|311343541|gb|EFR02744.1| chromosomes protein 4 structural maintenance [Arthroderma gypseum
           CBS 118893]
          Length = 1430

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 16/119 (13%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           R+ I  L ++ F++YA  +    F A  +  VG NG GK+N+++++ F+    GFR +  
Sbjct: 223 RMVITHLVLTNFKSYAGQQFVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASKM 279

Query: 62  AD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
                  +    +      F  VE               +  +++   S R  + N   
Sbjct: 280 RQGKISALIHNSANFPNLPFCEVEVHFQEIMDLPDGGHEVVPDSQLVVSRRAFRNNSSK 338


>gi|225025908|ref|ZP_03715100.1| hypothetical protein EUBHAL_00144 [Eubacterium hallii DSM 3353]
 gi|224956694|gb|EEG37903.1| hypothetical protein EUBHAL_00144 [Eubacterium hallii DSM 3353]
          Length = 1187

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I+ F+++A+ +   F    T  VG NG GK+NI +A+   L     R  R + 
Sbjct: 1   MYLKSIEINGFKSFANKIVFEFPQGITGIVGPNGSGKSNIGDAVRWVLGEQSARQLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             DV   G+ S     F       E    +  +  +      R  R       IN    R
Sbjct: 61  MEDVIFSGTQSRRPMGFAYVAITFENANRIIPLDYEEVMVARRVYRSGESEYLINGSSCR 120

Query: 112 VVD 114
             D
Sbjct: 121 RRD 123


>gi|164687823|ref|ZP_02211851.1| hypothetical protein CLOBAR_01467 [Clostridium bartlettii DSM
           16795]
 gi|164603098|gb|EDQ96563.1| hypothetical protein CLOBAR_01467 [Clostridium bartlettii DSM
           16795]
          Length = 619

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 17/110 (15%)

Query: 5   IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +KIK + IS +++       L+ +   T  +G N  GK+NILEA+  +S           
Sbjct: 1   MKIKSIIISNYKSLGEERNVLLLEDNITALIGKNDSGKSNILEALGNISF---------- 50

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
                 +  FFS   R      +  + +K     ++  + L I+    + 
Sbjct: 51  --IHHINDDFFSKKNRYTNRNIVITVELKFT---EKECQQLLIDSKNPKT 95


>gi|157136238|ref|XP_001656789.1| structural maintenance of chromosomes smc2 [Aedes aegypti]
 gi|108881057|gb|EAT45282.1| structural maintenance of chromosomes smc2 [Aedes aegypti]
          Length = 1182

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 47/232 (20%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + I  F++Y     +  FD +     G NG GK+NIL++I F   +S     R  
Sbjct: 1   MYIKSIIIDGFKSYGKRTEIHGFDPEFNAITGLNGTGKSNILDSICFVLGISNLVHVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++  + G          +            G E   +ISI  +       + L IN 
Sbjct: 61  SLQELVYKSGQAGVTKATVTLVFDNTDKDQCPLGYEKCNEISITRQIVVGGKNKYL-ING 119

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
             +  + V +L                          F    +   +P          ++
Sbjct: 120 KTVQNKKVQDL--------------------------FCSVQLNVNNPNFLIMQGRITKV 153

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
           +  + + +     +++  S  EA+  E  +K+   +   +N L +++ E ++
Sbjct: 154 LNMKPQEILSMIEEAAGTSVYEAK-REHSIKLIEKKDAKLNELYTVLREEIE 204


>gi|159026992|emb|CAO86712.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
 gi|159028061|emb|CAO87138.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
 gi|159028989|emb|CAO87450.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 255

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          IK + IS FR +   ++    +  +  G N  GKT +LEAI   S 
Sbjct: 2  IKDIEISNFRCFEHTKIEGFERVNLIGGKNNSGKTALLEAIFLYSY 47


>gi|148675530|gb|EDL07477.1| structural maintenance of chromosomes 1A, isoform CRA_b [Mus
           musculus]
          Length = 1043

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 38  LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 97

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 98  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 156

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 157 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 190


>gi|331010187|gb|EGH90243.1| AAA ATPase [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 589

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 117/359 (32%), Gaps = 42/359 (11%)

Query: 5   IK-IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +  +  ++I  FR+   + L      T  VG N  GK+ IL+AI  +   + F   + A+
Sbjct: 1   MHSLSKIHIKNFRSCKQVILPLGD-FTPLVGQNNAGKSTILDAIRLVLAPKAF-AKTDAN 58

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI- 122
                        A V G+       I  E +   ++    IN  +   +          
Sbjct: 59  ----DPNQPVIISACVSGITEELIAQIP-EPKHQAAITPYCINGDLWIRISASGSTKPTT 113

Query: 123 -SWLVPSMDRIFSGLSMERRRF---LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
             W    +D    GL    R +   L + + A+ P          R M      L +G  
Sbjct: 114 EVWENAELDE--QGLPASWRSYPTGLPQAISALLPEALHI-----RAMDDVQEDLGKGKA 166

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
            S+    ++  MA     I  A  E+ +AL+++                    L  +FD 
Sbjct: 167 GSTIRGLLDEIMAP----ILTAHQEVQDALTAVRNILGADGEN-------RSPLLTEFDT 215

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH---GSTGEQKVV 295
           +       +   L     + S+  +        DL V       T      GS G Q+ +
Sbjct: 216 NATNALSSFFPGLLLNLDVPSIDVKEFF--KSGDLNVTDEISGQTRRFDTLGS-GAQRAI 272

Query: 296 LVGIF--LAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FRIVTDIGSQIFMTG 349
            + +   LA  R   +      +LL+DE    L       L     +++  G Q+  T 
Sbjct: 273 QMALIRLLADIRKTRDQDLARRLLLIDEPEIFLHPQGVRGLREALHVLSKSGYQVVFTT 331


>gi|315925310|ref|ZP_07921521.1| ATP-dependent endonuclease of the OLD family protein
          [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621211|gb|EFV01181.1| ATP-dependent endonuclease of the OLD family protein
          [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 451

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 5  IKIKFLNI-SEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          + I+ +N+   +RN +   L FD      +G+N +GKTN+
Sbjct: 1  MFIRAINLIENYRNLSHQTLTFDPAVNFLIGENNIGKTNV 40


>gi|301612084|ref|XP_002935560.1| PREDICTED: structural maintenance of chromosomes protein 1A-like
           [Xenopus (Silurana) tropicalis]
          Length = 1232

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFHRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--------- 111
           +     +G P+    F  +   E   +  +             +IN+ V++         
Sbjct: 64  LIHGAPVGKPAANRAFVSMVYSEDSGEEKV-FSRVIVGGSSEYKINNKVVQLSEYSDELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|284050687|ref|ZP_06380897.1| SMC domain-containing protein [Arthrospira platensis str. Paraca]
 gi|291566043|dbj|BAI88315.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 395

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I+ + I  F++  S  L    +   F+G NG GK+N+LEA+  L 
Sbjct: 2  IREVKIRGFKSIYSATLELG-RVNCFIGANGSGKSNLLEALGVLG 45


>gi|227510473|ref|ZP_03940522.1| DNA repair protein RecN [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190125|gb|EEI70192.1| DNA repair protein RecN [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 564

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 70/196 (35%), Gaps = 19/196 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF---RRASYA 62
           +  L+I++F     L + F +  T+  G+ G GK+ I++A+  L  GR      R  +  
Sbjct: 2   LLELSITDFAIIEHLDIEFQSGMTVLTGETGAGKSIIIDAVGLLVGGRGSHDLIRTGAKK 61

Query: 63  DVTR------IGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRC--LQINDVVIRVV 113
            V +        +P++       ++  +G   I  ++      S R   + IN   +R +
Sbjct: 62  SVIQGNFILSDDNPTYEVLDELGIDHSDGNVIIEREIFASGRNSCRVNGMMINIATLRRI 121

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRMIDFERLMRGRNRL 172
            E    ++          +           LD      I P       D+++ ++ R   
Sbjct: 122 GETMVDIQGQ---NEHQELMK--PERHIELLDDFAEDTIQPVLVTYQKDYDQFVKLRAIN 176

Query: 173 LTEGYFDSSWCSSIEA 188
             +   +  W   ++ 
Sbjct: 177 EKKHQNEKEWAQRVDM 192


>gi|215741288|dbj|BAG97783.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 119

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA--ISFLSPGRG-FRRASYAD 63
          I  + +  F  ++SL +          G NG GK+ +L A  I+F S  +   R A+  D
Sbjct: 5  ISRIRLENFMCHSSLHIELGQHVNFITGQNGSGKSAVLTALCIAFGSRAKSTQRAAALKD 64

Query: 64 VTRIGSPSFFSTF 76
            +          
Sbjct: 65 FIKTDCSYAAIIV 77


>gi|159128071|gb|EDP53186.1| DNA repair protein Rad18, putative [Aspergillus fumigatus A1163]
          Length = 1082

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 26/176 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +   R+         VG NG GK+ +L AI+    G+     R  S   
Sbjct: 115 LERVECYNFMCHDHFRVELGPLINFIVGKNGSGKSAVLTAITLCLGGKASATNRGQSLKS 174

Query: 64  VTRIGSPSFFSTFARVEGMEG---------LADISIKLETRDDRSVRCLQINDVVIRV-- 112
             + G  S           +G            I            +    N  +I    
Sbjct: 175 FIKEGKESATIIVRLKNQGDGAFMPDDYGKSIIIERHFSKNGTSGFKIKAENGRIISTKK 234

Query: 113 --VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR 156
             +D +  +  + +  P        +   + +    ++ RF      +  +D  +R
Sbjct: 235 AELDSIIDYFTLQFDNPMNVLSQDMARQFLSTSSPADKYRFFVKGVQLEQLDQDYR 290


>gi|168484954|ref|ZP_02709899.1| DNA repair protein RecN [Streptococcus pneumoniae CDC1873-00]
 gi|172041909|gb|EDT49955.1| DNA repair protein RecN [Streptococcus pneumoniae CDC1873-00]
          Length = 555

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 76/208 (36%), Gaps = 25/208 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RS+  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL         + +              F D   + +   ++     + ++ + 
Sbjct: 117 LRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVK 196
              +             +E QMAE+   
Sbjct: 175 VLEVKKNQQEHKERIEMLEFQMAEIEAA 202


>gi|149031309|gb|EDL86307.1| structural maintenance of chromosomes 1 like 1 (S. cerevisiae),
           isoform CRA_a [Rattus norvegicus]
          Length = 1001

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|51327185|gb|AAH80185.1| SMC1A protein [Homo sapiens]
          Length = 417

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|53712444|ref|YP_098436.1| hypothetical protein BF1152 [Bacteroides fragilis YCH46]
 gi|52215309|dbj|BAD47902.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 529

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 26/43 (60%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          I+ + I  F+      + F+ +  I VG+NG+GK+ ++EA++ 
Sbjct: 2  IERVIIENFKGIKKADISFNDKINIIVGNNGIGKSTLIEAMAL 44


>gi|71000751|ref|XP_755057.1| DNA repair protein Rad18 [Aspergillus fumigatus Af293]
 gi|66852694|gb|EAL93019.1| DNA repair protein Rad18, putative [Aspergillus fumigatus Af293]
          Length = 1082

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 26/176 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +   R+         VG NG GK+ +L AI+    G+     R  S   
Sbjct: 115 LERVECYNFMCHDHFRVELGPLINFIVGKNGSGKSAVLTAITLCLGGKASATNRGQSLKS 174

Query: 64  VTRIGSPSFFSTFARVEGMEG---------LADISIKLETRDDRSVRCLQINDVVIRV-- 112
             + G  S           +G            I            +    N  +I    
Sbjct: 175 FIKEGKESATIIVRLKNQGDGAFMPDDYGKSIIIERHFSKNGTSGFKIKAENGRIISTKK 234

Query: 113 --VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR 156
             +D +  +  + +  P        +   + +    ++ RF      +  +D  +R
Sbjct: 235 AELDSIIDYFTLQFDNPMNVLSQDMARQFLSTSSPADKYRFFVKGVQLEQLDQDYR 290


>gi|332027986|gb|EGI68037.1| Structural maintenance of chromosomes protein 2 [Acromyrmex
           echinatior]
          Length = 1177

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 20/145 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++Y   + +  FD +     G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MYIKSIVLEGFKSYGKRIEINGFDKEFNAITGFNGSGKSNILDAICFVLGITNLGQVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+  + G          +            G E   +I I  +       +   IN 
Sbjct: 61  SLQDLVYKSGQAGIKKASVTITFDNRDTEISPMGYEQHEEIVITRQVVIGGKNK-YMING 119

Query: 108 V--VIRVVDELNKHLRISWLVPSMD 130
                + V +L   ++++   P   
Sbjct: 120 TNAPNKRVQDLFCSVQLNVNNPHFL 144


>gi|302658026|ref|XP_003020723.1| hypothetical protein TRV_05174 [Trichophyton verrucosum HKI 0517]
 gi|291184581|gb|EFE40105.1| hypothetical protein TRV_05174 [Trichophyton verrucosum HKI 0517]
          Length = 1431

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           R+ I  L ++ F++YA  +    F A  +  VG NG GK+N+++++ F+    GFR +  
Sbjct: 224 RMVITHLVLTNFKSYAGQQFVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASKM 280

Query: 62  AD-----VTRIGSPSFFSTFARVEGMEGLA 86
                  +    +      F  VE      
Sbjct: 281 RQGKISALIHNSANFPNLPFCEVEVHFQEV 310


>gi|290509630|ref|ZP_06549001.1| RecF/RecN/SMC domain-containing protein [Klebsiella sp. 1_1_55]
 gi|289779024|gb|EFD87021.1| RecF/RecN/SMC domain-containing protein [Klebsiella sp. 1_1_55]
          Length = 376

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + I+++ I  FR+   + L       I  G NG GK+NI  AI  L+
Sbjct: 14 MMIQYIRIQNFRSVRDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 59


>gi|290986805|ref|XP_002676114.1| predicted protein [Naegleria gruberi]
 gi|284089714|gb|EFC43370.1| predicted protein [Naegleria gruberi]
          Length = 105

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
          I+ + +  F  + + ++ F  + TI  G+NG GK+ +L AI      +     R  S  D
Sbjct: 4  IEEIKLKNFMCHPNFKVEFHDRTTIIHGENGSGKSAVLTAIQVGLGSKAKNTNRGNSIKD 63

Query: 64 VTRIGSPSF-FSTFARVEGME 83
          +   G          R +G +
Sbjct: 64 LVMSGKEHAEIMIRLRNQGRD 84


>gi|262198621|ref|YP_003269830.1| ATP-binding protein [Haliangium ochraceum DSM 14365]
 gi|262081968|gb|ACY17937.1| ATP-binding protein [Haliangium ochraceum DSM 14365]
          Length = 356

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RR 58
          +KI+ + I  F  +  +   F     +F+G N  GK+++L+ +   +P +        R 
Sbjct: 1  MKIRSIQIDRFTAFEHIEAEFSPGLNVFIGANATGKSHLLKLLY--APLKTLEQSPHRRG 58

Query: 59 ASYAD 63
          +   +
Sbjct: 59 SRDRE 63


>gi|256378727|ref|YP_003102387.1| ATP-dependent endonuclease of the OLD family- like protein
          [Actinosynnema mirum DSM 43827]
 gi|255923030|gb|ACU38541.1| ATP-dependent endonuclease of the OLD family- like protein
          [Actinosynnema mirum DSM 43827]
          Length = 648

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++I  + I  FR  A + + FD Q T  +G NGVGK+ +L A+ +   G
Sbjct: 1  MRISKVRIKNFRCLADVEVRFD-QVTTLIGPNGVGKSTVLRALDWFFNG 48


>gi|291484865|dbj|BAI85940.1| DNA repair protein RecN [Bacillus subtilis subsp. natto BEST195]
          Length = 576

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 90/254 (35%), Gaps = 37/254 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F+   T+  G+ G GK+ I++AIS L  GRG      ++  R
Sbjct: 2   LAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRG-----SSEFVR 56

Query: 67  IGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVI--- 110
            G                       E    ++D  I +      S + + ++N  ++   
Sbjct: 57  YGEAKAELEGLFLLESGHPVLGVCAEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIA 116

Query: 111 ------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                 R++ +++       L+   + +         +F    V +    ++     + +
Sbjct: 117 SLREIGRLLLDIHGQHDNQLLMEDENHL-----ELLDKFAGAEVESALKTYQEGYQRYMK 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L++   +L       +     I+ Q+     +I  A++E+      L  E  Q  NF  I
Sbjct: 172 LLKKLKQLSESEQEMAHRLDLIQFQL----EEIESAKLELNED-EQLQEERQQISNFEKI 226

Query: 225 KLSLTGFLDGKFDQ 238
             SL    +    +
Sbjct: 227 YESLQNAYNALRSE 240


>gi|228997242|ref|ZP_04156866.1| hypothetical protein bmyco0003_18250 [Bacillus mycoides Rock3-17]
 gi|228762516|gb|EEM11439.1| hypothetical protein bmyco0003_18250 [Bacillus mycoides Rock3-17]
          Length = 707

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 64/380 (16%), Positives = 136/380 (35%), Gaps = 53/380 (13%)

Query: 5   IKIKFLNISEFRNY-------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           + +K +++  FR +         + +  + +  + VG+N  GKT I++ I +L       
Sbjct: 1   MYLKSISLYNFRQFGINDDGSPGITVHLNPKFNVLVGENDSGKTAIIDGIKYLLGSVS-- 58

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                D  +I    FFS    V   +   +  I  E  D  +          +  +    
Sbjct: 59  ----DDYEKISQEDFFSLSKDVYSDQFFIE-GIFTELSDREA-------GAFLEWLSFDA 106

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM---------IDFERLMRG 168
           ++     ++    R+    +     F+DR + A +     R+           + + +R 
Sbjct: 107 QNNYTLRII---LRVEKRKNENGTEFIDRKLLAGEKDFESRLDSKARNVLKTTYLKPLRD 163

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV-EMINALSSLIMEYVQKENFPHIKLS 227
               L  G F S     ++A     G++    R+ E++ A +  I +Y + E       S
Sbjct: 164 AGSELKPG-FRSRLVHILKAHPTFKGIEEQNHRLVEVMKAANEEIEKYFENEYTD--GHS 220

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           L   ++      +  L +  +K  F   + D  S    +  +  D+ +   +  +     
Sbjct: 221 LINDIENLLSDFYDNLDQSKSKAKFAVTQTDLTSILRKLSLNTEDVNLGLGNLNLLFIAT 280

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV------TDI 341
                 ++L+  ++A   LI        I L++EI AHL    +  L + +       + 
Sbjct: 281 E-----LLLLNNYMAGNELI-----GPKITLIEEIEAHLHTQAQIRLIKFLESELEGEEN 330

Query: 342 GSQIFMTGTDKSVFDSLNET 361
            SQ  +T    ++  S++  
Sbjct: 331 KSQFILTSHSSNLVASVDPK 350


>gi|283795768|ref|ZP_06344921.1| conserved hypothetical protein [Clostridium sp. M62/1]
 gi|291076706|gb|EFE14070.1| conserved hypothetical protein [Clostridium sp. M62/1]
          Length = 394

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + ++ +    F+           +  +F+G NG GK+ ILE I  LS
Sbjct: 1  MNLRKITFGNFKCLYKASFEPG-KVNVFIGSNGSGKSTILEGIGLLS 46


>gi|158257274|dbj|BAF84610.1| unnamed protein product [Homo sapiens]
          Length = 842

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|39963673|gb|AAH64368.1| SMC1A protein [Homo sapiens]
          Length = 847

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTRIGSP--------SFFSTFARVEGMEGLADISIKL----ETRDDRSVRCLQINDVVIR 111
           +   G+P        +F S     EG E      + +    E + +  V  L      + 
Sbjct: 64  LI-HGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGSSEYKINNKVVQLHEYSEELE 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +  L K         +++ I      ER    +
Sbjct: 123 KLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|154686688|ref|YP_001421849.1| hypothetical protein RBAM_022570 [Bacillus amyloliquefaciens FZB42]
 gi|52673264|emb|CAH56505.1| DNA repair protein recN [Bacillus amyloliquefaciens FZB42]
 gi|154352539|gb|ABS74618.1| RecN [Bacillus amyloliquefaciens FZB42]
          Length = 576

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 88/255 (34%), Gaps = 39/255 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F+   T+  G+ G GK+ I++A+S L  GRG      ++  R
Sbjct: 2   LAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRG-----SSEFVR 56

Query: 67  IGS-----PSFFST--------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--- 110
            G         F            R +G++   D+ +     +       ++N  ++   
Sbjct: 57  YGETKAELEGLFLLDSGHPVFEVCREQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIA 116

Query: 111 ------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                 R++ +++       L+     +         RF      +    +      + +
Sbjct: 117 ALREIGRLLLDIHGQHDNQLLMEDDKHL-----ELLDRFAGAEAESALQAYHEGYERYMK 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQKENFPH 223
           L++   +L       +     I+ Q+ E+   K+ +   E++        E  Q  NF  
Sbjct: 172 LLKKAKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQE------ERKQISNFEK 225

Query: 224 IKLSLTGFLDGKFDQ 238
           I  SL    +    +
Sbjct: 226 IYESLQNAYNALRSE 240


>gi|189500609|ref|YP_001960079.1| hypothetical protein Cphamn1_1679 [Chlorobium phaeobacteroides
          BS1]
 gi|189496050|gb|ACE04598.1| conserved hypothetical protein [Chlorobium phaeobacteroides BS1]
          Length = 351

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ L +     +  L L    +  + +G+NG GKT++L+A   L  G
Sbjct: 2  IERLELRNLTVFTGLTLELSPKINVIIGENGTGKTHLLKAAYGLCAG 48


>gi|330973311|gb|EGH73377.1| chromosome segregation protein SMC [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 1162

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 106/327 (32%), Gaps = 50/327 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     V  NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVAPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +   + + +  + +  ++     +++               E   K
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLK 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                ++      L G+ +      +  +   + D R  D+   R   G H  DL   + 
Sbjct: 230 AQLSALRWQALNDLVGQREAVISNQEVGFEALVADQRSADASIERLRDGHH--DLSERFN 287

Query: 279 ---------DKAITIAHGS--TGEQKV 294
                       I     S   G+Q++
Sbjct: 288 LVQGRFYSVGGDIARVEQSIQHGQQRL 314


>gi|289670697|ref|ZP_06491772.1| hypothetical protein XcampmN_19983 [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 398

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 10/132 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-------R 57
           ++I+ + I  FR + + +L    +  + VG NG GK+ + +  SFL             +
Sbjct: 1   MQIESIEIKNFRLFRNAKLTHVPRLCVLVGANGTGKSTLFDVFSFLKDALSMNVGKAIAK 60

Query: 58  RASYADVTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           R  Y +V   G    P  F+   R+E       ++  L+       R     +++     
Sbjct: 61  RGGYKEVASRGFAHEPIEFTLQFRLEITGRERLVTYVLKIAPATGTRVEIERELLRYKRG 120

Query: 115 ELNKHLRISWLV 126
                 R     
Sbjct: 121 SYGAPFRFLDFA 132


>gi|197104048|ref|YP_002129425.1| chromosome segregation SMC protein [Phenylobacterium zucineum HLK1]
 gi|196477468|gb|ACG76996.1| chromosome segregation SMC protein [Phenylobacterium zucineum HLK1]
          Length = 1147

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +  + L +S F+++        +   T  VG NG GK+N+LEA+ ++         R   
Sbjct: 1   MHFQRLRLSGFKSFVDPTEFRIERGITGIVGPNGCGKSNLLEALRWVMGANSAKAMRAGG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRS-VRCLQINDV 108
             DV   G+      +       ++  +  A  +      +++  R DR      +IN  
Sbjct: 61  MDDVIFAGAANRPGRNHAEVSLTIDNSDRRAPAAFNDHPVLEVVRRIDRGEGSTYRINGR 120

Query: 109 VIRVVD 114
            +R  D
Sbjct: 121 EVRARD 126


>gi|325957343|ref|YP_004292755.1| DNA repair ATPase [Lactobacillus acidophilus 30SC]
 gi|325333908|gb|ADZ07816.1| DNA repair ATPase [Lactobacillus acidophilus 30SC]
          Length = 831

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 16/172 (9%)

Query: 194 GVKINIARVEMIN---ALSSLIMEYVQKENFPH-IKLSLTGFLDGKFDQSFCALKEEYAK 249
              +  AR ++ N      S   EY+        I  SL    + +F +   A KE Y  
Sbjct: 657 STAVFEARQDLANTETNFESSSKEYLANLLAAKWIGRSLDLASNERFPKMLKAAKE-YLA 715

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L  GR +D    + L    +         K   + + S G  + +   + LA    I +
Sbjct: 716 LLTGGRYVDLELGKKLTVIRKD-------GKKRDVKYLSRGTAEQLYFALKLAFVEQIKD 768

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
                  +L+D+  A+ D+ +   + +++  I   +Q+ +    +++ + L 
Sbjct: 769 EINLP--ILIDDSFANFDDHRIKYIEQLLKKISENNQVLIFTAQENLVEKLR 818



 Score = 36.4 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 73/216 (33%), Gaps = 29/216 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +++K + +  F  ++       ++   +F G N  GK+  +  I  +  G   R  S   
Sbjct: 1   MRLKQIKMINFGQFSDKSFDLPSKEINVFFGANEAGKSTTVAFIKQIMFGFHLRSNSSPF 60

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  + SP   S     +  E   +       +  R +  ++ +  V+      +
Sbjct: 61  FEDYTPLAHV-SPMGGSLVFEADDGEYELERLYAKGDKTKRGILTVKKDGQVVPESLFFD 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR-------- 169
           +  +I+    +   IF+   + +   L +    ++  +     +  +L+  R        
Sbjct: 120 QIQKINGSFYADSFIFNQEMLGQVSSLSQEDL-LERIYYLGAANSGKLLEMRDGFEKEAG 178

Query: 170 ------------NRLLTEGYFDSSWCSSIEAQMAEL 193
                       NRLL +   D    +  +A+  + 
Sbjct: 179 KLFKKTGKKPEVNRLLKQMEDDRDNLAQTQAEFGDY 214


>gi|322488787|emb|CBZ24034.1| adaptor complex protein (AP) 3 delta subunit 1,putative [Leishmania
           mexicana MHOM/GT/2001/U1103]
          Length = 1198

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRAS 60
           + IK + IS FR+Y           +  + VG NG GK+N   AI F+   +    R   
Sbjct: 1   MFIKNIIISGFRSYREQSFPDGLSPKTNVIVGKNGSGKSNFFAAIQFVLNEKFANLRAVE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
             ++  +GS    +    VE +   +D  + +  R +     ++I   V    DE 
Sbjct: 61  RKELFHVGSGRP-ALSVFVEIVFDNSDGRLVIPGRAEEPE--VRIRRTVGLKQDEF 113



 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 63/208 (30%), Gaps = 28/208 (13%)

Query: 163  ERLMRGRNRLLTEGYFDSSWCSSIEAQM---AELGVKINIARVEMINALSSLIMEYVQKE 219
             + +     L       +S   ++  ++    EL   ++  + E I      +       
Sbjct: 979  RKALDQHAALQEAMKDLTSQQETLAKELDSIHELMEHLDAKKEEAIERTYKQVQYQ---- 1034

Query: 220  NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
             F  +   L G          C+ + +        +K D  +        R  +     +
Sbjct: 1035 -FEEVFKQLVGV-------ESCSAELQLVASAAPNKKEDPYTG------ARIKVSFGLGN 1080

Query: 280  KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV- 338
                +   S G++ +V + +  A           AP  L DEI A LD + R ++  ++ 
Sbjct: 1081 PVSHLDQLSGGQKSLVALALIFA-----IQRCDPAPFYLFDEIDAALDAEYRTSVANMMA 1135

Query: 339  -TDIGSQIFMTGTDKSVFDSLNETAKFM 365
                  Q  +      + D  ++     
Sbjct: 1136 RQSSECQFLVATFKTELLDVADKVLGIF 1163


>gi|298384285|ref|ZP_06993845.1| hypothetical protein HMPREF9007_00882 [Bacteroides sp. 1_1_14]
 gi|298262564|gb|EFI05428.1| hypothetical protein HMPREF9007_00882 [Bacteroides sp. 1_1_14]
          Length = 723

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK + I+ FR+Y       F    T+ +G NG GKT   EA+ +L
Sbjct: 1  MIIKSVTINNFRSYYGENTFEFSKGLTLIIGGNGDGKTTFFEALEWL 47


>gi|218246354|ref|YP_002371725.1| ATPase-like protein [Cyanothece sp. PCC 8801]
 gi|218166832|gb|ACK65569.1| ATPase-like protein [Cyanothece sp. PCC 8801]
          Length = 131

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 15/101 (14%)

Query: 5   IKIKFLN--ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + +K ++  I  F++   + L F    TI VG N  GK+N LEA++FLS           
Sbjct: 1   MSLKLISANIQNFKSLGDVTLNFRD-LTILVGANSSGKSNCLEALNFLS----------- 48

Query: 63  DVTRIGSPSFFSTFA-RVEGMEGLADISIKLETRDDRSVRC 102
           ++ + G+P   S    ++  ++    I+I +  +DD   + 
Sbjct: 49  EIVKEGTPPSDSDTIKKILKIDANTGINIAITIQDDNEKKA 89


>gi|154277518|ref|XP_001539600.1| hypothetical protein HCAG_05067 [Ajellomyces capsulatus NAm1]
 gi|150413185|gb|EDN08568.1| hypothetical protein HCAG_05067 [Ajellomyces capsulatus NAm1]
          Length = 1075

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 37/130 (28%), Gaps = 17/130 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + + +F  Y S       +  + +G NG GK+ +      L      R    A+  +
Sbjct: 127 IVRVKLRDFVTYTSAEFFPGPRLNMVIGPNGTGKSTL-----HLG-----RAKDPAEFVK 176

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKHLRISW 124
            G           +G     +  I+       +     IN          EL K   I  
Sbjct: 177 HGCEEATIEIELAKGRNHRENPVIRRTIVRKGNKSTFTINGKPSSKASVLELAKSFSIQI 236

Query: 125 -----LVPSM 129
                 +P  
Sbjct: 237 DNLCQFLPQD 246


>gi|222151067|ref|YP_002560221.1| hypothetical protein MCCL_0818 [Macrococcus caseolyticus JCSC5402]
 gi|222120190|dbj|BAH17525.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 1192

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 106/298 (35%), Gaps = 26/298 (8%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62
           ++ +  + F+++A    ++FD   T  VG NG GK+NI +AI   L     +  R A   
Sbjct: 4   LQSVEATGFKSFADKTTVLFDEGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGAKME 63

Query: 63  DVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           D+   G+ +  +T FA+V       + S+ +++      R L  +        E   + +
Sbjct: 64  DIIFSGAQNRNATNFAQVTLTINNIERSLAVDSDKVLITRKLFRSGE-----SEYFLNHQ 118

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
              L   +  +F    + R  F       +D     +  +  +L+     +L        
Sbjct: 119 KVRLK-DITELFLDSGLGRDAFSIISQGKVDQVLNAKPSERRQLIEEAAGVLKYKKRKVE 177

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL-DGKFDQSF 240
               +E  M  L         ++I  L   +     + +     ++L+  + D     + 
Sbjct: 178 TEQKLEDTMNNLS-----RVHDIIFDLKDRVEPLKIEASIAEEYIALSEEMKDADIQVTV 232

Query: 241 CALKE---EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
             +KE   EY +   + +  D   +       R D      +K          +QK++
Sbjct: 233 HDIKESNAEYERLQQEIQSFDEQLKY------RKDKSARISNKLDAHKSERNKQQKLL 284


>gi|182436467|ref|YP_001824186.1| hypothetical protein SGR_2674 [Streptomyces griseus subsp.
          griseus NBRC 13350]
 gi|178464983|dbj|BAG19503.1| conserved hypothetical protein [Streptomyces griseus subsp.
          griseus NBRC 13350]
          Length = 472

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  + +  F+N  +L + F    T   G+NG GK+N+ +AI FLS  
Sbjct: 2  LTRIEVHGFKNLLNLSIDFGP-FTCIAGENGTGKSNVFDAIQFLSLL 47


>gi|171058643|ref|YP_001790992.1| hypothetical protein Lcho_1960 [Leptothrix cholodnii SP-6]
 gi|170776088|gb|ACB34227.1| conserved hypothetical protein [Leptothrix cholodnii SP-6]
          Length = 522

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRG 55
          I+ L +  F+ + +L L FD +  I VG N  GK+++L+A+   LS  R 
Sbjct: 4  IRRLVLKNFKRFRTLELEFDGELNILVGGNEAGKSSVLQAMEIVLSASRS 53


>gi|110667233|ref|YP_657044.1| chromosome partition protein [Haloquadratum walsbyi DSM 16790]
 gi|109624980|emb|CAJ51393.1| chromosome partition protein [Haloquadratum walsbyi DSM 16790]
          Length = 1198

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + IK L +  F+++  +  + F    T+  G NG GK+NI++ + F   L+  RG R   
Sbjct: 1  MHIKTLILDGFKSFGRATEIPFYEDFTVVTGPNGSGKSNIIDGVLFALGLARTRGIRAEK 60

Query: 61 YADVT 65
            D+ 
Sbjct: 61 LTDLI 65


>gi|186685788|ref|YP_001868984.1| chromosome segregation protein SMC [Nostoc punctiforme PCC 73102]
 gi|186468240|gb|ACC84041.1| chromosome segregation protein SMC [Nostoc punctiforme PCC 73102]
          Length = 1223

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + IK + ++ F+++  +  +      T+  G NG GK+NIL+A+ F   LS  +G R   
Sbjct: 2  VHIKRVELTNFKSFGGTTSVPLLPGCTVISGPNGSGKSNILDALLFCLGLSSSKGMRADR 61

Query: 61 YADVTR 66
            D+  
Sbjct: 62 LPDLVN 67


>gi|289523809|ref|ZP_06440663.1| putative RecF/RecN/SMC N domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502953|gb|EFD24117.1| putative RecF/RecN/SMC N domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 894

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 3/121 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
           +++  L +          + FD      VG NG GK++IL+++     G     R  +  
Sbjct: 1   MRLLELKVRNILGLREAGINFDPGAVAIVGPNGAGKSSILDSLVLALFGSPTPVRVVNNL 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           +V R+GS         V+  + +  I+ K +    +    L+         D +  +++ 
Sbjct: 61  NVIRMGSSEGRVICTFVKNGD-VYRITRKFKGPKGQQEALLEKGGDDGGKWDVIASNVKE 119

Query: 123 S 123
            
Sbjct: 120 V 120



 Score = 36.4 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
           L +   ++L      +   +   +   R +L V         A  S GE+ +V + +   
Sbjct: 765 LSDTILEELLSAVNKNLSFKGFSLVAERGNLYVTSGGYRRDAASLSGGERAMVSLMM--- 821

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
             R ++N  GF  IL +DE  A LD+     +  +  ++G + F+
Sbjct: 822 -LRHLANRVGFKQILFIDEGLAMLDDGNLEMMMELFDNLGKEAFV 865


>gi|209946264|gb|ACI97363.1| SMC1 [Drosophila melanogaster]
          Length = 306

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|93004894|ref|YP_579331.1| DNA repair protein RecN [Psychrobacter cryohalolentis K5]
 gi|92392572|gb|ABE73847.1| DNA repair protein RecN [Psychrobacter cryohalolentis K5]
          Length = 559

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 73/206 (35%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +++F   A   L       +  G+ G GK+ +L+A+S     R     + + + R
Sbjct: 2   LVSLTLNQFALIAQHELSVAEGFNVITGETGAGKSLLLDALSLCIGER-----ADSAMVR 56

Query: 67  IGSPSF--------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+                    FA+ E      D+ I+ +  +    +   +N   + +
Sbjct: 57  HGAAHADIYAQFDVENNSIIAEWFAKNERALEEPDVLIRRQLSNTGRSKA-WLNGTPVSL 115

Query: 113 --VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM--VFAIDPRHRRRMIDFERLMRG 168
             +  L   L       +   +         ++LD M  + ++  +       +++L R 
Sbjct: 116 AELKSLGALLVNIHSQHAQQALLK--PQFVVQWLDEMAQITSLATQTSSSYQAYQQLKRR 173

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG 194
            + L +           +++Q+A++ 
Sbjct: 174 ADDLASREAQRQDRIQLLQSQLADIA 199


>gi|256422037|ref|YP_003122690.1| hypothetical protein Cpin_3013 [Chitinophaga pinensis DSM 2588]
 gi|256036945|gb|ACU60489.1| conserved hypothetical protein [Chitinophaga pinensis DSM 2588]
          Length = 520

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 7/116 (6%)

Query: 5   IK-IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K IK + +  F+ + SL + F     + +GDN  GK++IL AI  +  G     +    
Sbjct: 1   MKTIKKIKLLNFKRFPSLEIEFQDDLNLLIGDNEAGKSSILSAIDLVLSG-SH--SKVES 57

Query: 64  V---TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           +     + S +  S FA  +    L  + I+L   D ++       +   R  D L
Sbjct: 58  LGIDVLLNSQAVESFFAGAKQYNRLPKLEIELYLNDQQNAELNGRANSENRTCDGL 113


>gi|221056346|ref|XP_002259311.1| structural maintenance of chromosome protein [Plasmodium knowlesi
           strain H]
 gi|193809382|emb|CAQ40084.1| structural maintenance of chromosome protein,putative [Plasmodium
           knowlesi strain H]
          Length = 1620

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 63/187 (33%), Gaps = 21/187 (11%)

Query: 7   IKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYAD 63
           IK+L +  F++Y    +    ++ T  +G NG GK+NI++ I F+     +  R  S   
Sbjct: 245 IKYLVVCNFKSYEGENIIGPFSKFTAIIGPNGSGKSNIMDCICFVLGIHNKCLRVKSMKQ 304

Query: 64  VTRIGSPSFFST------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           +                 + ++        + IK      R      IN+ ++   + + 
Sbjct: 305 LIHHKENEKVELLKKRKCYVKLILECNKETVEIKRTLNY-RGGSNYYINEKLVEHKEYIA 363

Query: 118 ---------KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
                    K          ++ + +    E  +  + +  + +  + +   D +  ++ 
Sbjct: 364 FLKKNRIETKTKTCLIFQGDIEDVINKKPNELAKLFEYISGSDE--YEQVYEDMKEKLKE 421

Query: 169 RNRLLTE 175
           +      
Sbjct: 422 KQMTCKR 428



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 275  VDYCDKAITIAH-----GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
            + Y +             S GE+ +  + +  +  + IS        ++LDE+ A++D  
Sbjct: 1508 IRYNNMPPMKRFFEISELSGGEKSMSALALIFSIQKYIS-----NSFIILDEVDANMDPI 1562

Query: 330  KRNALFRIVTDIGSQIFMTGTDKSVFDS 357
            K +AL R +  I SQ+ +    +  F  
Sbjct: 1563 KMSALARYLNSINSQVIVISLKEKFFSK 1590


>gi|257077361|ref|ZP_05571722.1| hypothetical protein Faci_09883 [Ferroplasma acidarmanus fer1]
          Length = 403

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          IK + I  F+   SL +    +  + VG N  GKT+ILEAIS  +
Sbjct: 2  IKHIAIKNFKGINSLEITP-KKFNVLVGRNNTGKTSILEAISVCT 45


>gi|126738031|ref|ZP_01753752.1| SMC protein [Roseobacter sp. SK209-2-6]
 gi|126720528|gb|EBA17233.1| SMC protein [Roseobacter sp. SK209-2-6]
          Length = 1151

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 96/266 (36%), Gaps = 33/266 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++   L +S F+++     L+     T  VG NG GK+N+LEA+ ++   +  +  R   
Sbjct: 1   MRFSKLRLSGFKSFVDPTDLIIGDGLTGVVGPNGCGKSNLLEALRWVMGETRAKAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G+ S     F      ++  E LA         +++  R  R +    + N  
Sbjct: 61  MEDVIFAGTSSRSARNFAEVNLLIDNSERLAPSGFNDSDQLEIVRRITRDAGSAYKSNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKSRRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-RVEMIN---ALSSLIMEYV 216
             E  ++ +N        D      +  Q+ +L  +   A R   I     L+  ++ Y 
Sbjct: 177 RHEAELKLKNTEQNLLRVDDV-VEQLAGQLGQLARQARQAQRYRDIGEKLRLAEGMLLYR 235

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCA 242
           +       +LS    L  +  Q+  A
Sbjct: 236 RWREADDARLSAEEELTIRVTQAAKA 261


>gi|119489523|ref|ZP_01622284.1| Chromosome segregation protein SMC [Lyngbya sp. PCC 8106]
 gi|119454602|gb|EAW35749.1| Chromosome segregation protein SMC [Lyngbya sp. PCC 8106]
          Length = 1217

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + IK + ++ F+++  +  +      T+  G NG GK+NIL+A+ F   LS  +G R   
Sbjct: 2  VHIKRVELTNFKSFGGTTDIPLLPGFTVVSGPNGSGKSNILDALLFALGLSSSKGMRAER 61

Query: 61 YADVTRIGS 69
            D+     
Sbjct: 62 LPDLVNNSQ 70


>gi|114625960|ref|XP_001137043.1| PREDICTED: structural maintenance of chromosomes 2-like 1 isoform
          5 [Pan troglodytes]
          Length = 1106

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK + +  F++YA    +  FD       G NG GK+NIL++I FL
Sbjct: 1  MHIKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFL 48


>gi|9965743|gb|AAG10148.1|AF250342_1 SMC-related protein MSS2 [Arabidopsis thaliana]
          Length = 284

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 74/221 (33%), Gaps = 30/221 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  +  L     ++  + +G NG GK++++ AI+    G      R  S   
Sbjct: 23  IIEIELHNFMTFNHLVCKPGSRLNLVIGPNGSGKSSLVCAIALCLGGEPQLLGRATSVGA 82

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-INDVVIRVVD--ELNKHL 120
             + G  S    + ++       + ++ +  + D   +     N   +   D  E+ +  
Sbjct: 83  YVKRGEDSG---YVKISLRGNTREENLTIFRKIDTRNKSEWMFNGSTVSKKDIVEIIQKF 139

Query: 121 RISWLVPSMDRIFSGLSMER-RRFLDRMVFAI------------DPRHRRRMIDFERLMR 167
            I       + +   L  +R   F       +             P H R +++  R ++
Sbjct: 140 NIQV-----NNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPVHHRALVEKSRDLK 194

Query: 168 GRNRLLTEGYFDSSWCSSI-EAQMAELGVKINIARVEMINA 207
              R + +     +   ++ + Q  E  V+    R   +  
Sbjct: 195 QLERAVAKNGETLNQLKALVDEQ--EKDVERVRQRELFLTK 233


>gi|189347468|ref|YP_001943997.1| chromosome segregation protein SMC [Chlorobium limicola DSM 245]
 gi|189341615|gb|ACD91018.1| chromosome segregation protein SMC [Chlorobium limicola DSM 245]
          Length = 1178

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
          + +  + I  F+++A  +R+ FD   T  VG NG GKTN+++AI   L   R    R A 
Sbjct: 1  MYLSKIEILGFKSFAHRVRISFDKGLTAIVGPNGCGKTNVVDAIRWVLGEQRTTLLRSAK 60

Query: 61 YADVTRIGSPSF 72
            ++   GS + 
Sbjct: 61 MENIIFNGSKNL 72



 Score = 36.4 bits (83), Expect = 6.4,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 69/190 (36%), Gaps = 24/190 (12%)

Query: 175  EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
            +    +   + ++ Q  + G    +A  E  +    L     QKE+    +  L   ++ 
Sbjct: 959  DRASSADRLAVLQKQREQFGAVNELALEEYESEKERLDFLITQKEDLFSAESQLRDTIEE 1018

Query: 235  -------KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD-------- 279
                   KF +++ A+++ +     +    D      L+     D +  + +        
Sbjct: 1019 INKTALLKFRETYAAVRKNFITIFHELF--DPEDEVDLLCSSTEDPLDAHIEIVAKPRGK 1076

Query: 280  KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
            K ++I   S GE+ +  + +  A   +       +P  +LDE+ A LD+       +++ 
Sbjct: 1077 KPLSIEQLSGGEKALTALSLLFAIYLV-----KPSPFCILDEVDAPLDDANVGRFIKLLK 1131

Query: 340  DI--GSQIFM 347
                 +Q  +
Sbjct: 1132 KFENNTQFII 1141


>gi|321311908|ref|YP_004204195.1| DNA repair/recombination protein [Bacillus subtilis BSn5]
 gi|320018182|gb|ADV93168.1| factor for double strand breaks DNA repair and genetic
           recombination [Bacillus subtilis BSn5]
          Length = 576

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 27/249 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F+   T+  G+ G GK+ I++AIS L  GRG      ++  R
Sbjct: 2   LAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRG-----SSEFVR 56

Query: 67  IGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDV--VIR 111
            G                       E    ++D  I +      S + + ++N     I 
Sbjct: 57  YGEAKAELEGLFLLESGHPVLGVCAEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIA 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            + E+ + L           +    +  +   +F    V +    ++     + +L++  
Sbjct: 117 SLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALKTYQEGYQRYMKLLKKL 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
            +L       +     I+ Q+     +I  A++E+      L  E  Q  NF  I  SL 
Sbjct: 177 KQLSESEQEMAHRLDLIQFQL----EEIESAKLELNED-EQLQEERQQISNFEKIYESLQ 231

Query: 230 GFLDGKFDQ 238
              +    +
Sbjct: 232 NAYNALRSE 240


>gi|194398186|ref|YP_002037806.1| DNA repair protein RecN [Streptococcus pneumoniae G54]
 gi|194357853|gb|ACF56301.1| DNA repair protein RecN [Streptococcus pneumoniae G54]
          Length = 555

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 76/211 (36%), Gaps = 28/211 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV
Sbjct: 1   MXLE-ISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDV 54

Query: 65  TRIGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI- 110
            R G+P                      +G+E   +I I+ E          ++N  ++ 
Sbjct: 55  IRHGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREI-LQNGRSISRVNGQMVN 113

Query: 111 -RVVDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERL 165
             V+  + +HL         + +              F D   + +   ++     + ++
Sbjct: 114 LSVLRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKM 171

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
            +    +        +    +E QMAE+   
Sbjct: 172 RKQVLEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|73662844|ref|YP_301625.1| chromosome segregation SMC protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495359|dbj|BAE18680.1| chromosome segregation SMC protein [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 1189

 Score = 53.0 bits (126), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 16/118 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++     + FD   T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 2   VYLKSIDAFGFKSFAEHTNVQFDEGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGAK 61

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
             D+   G+             +  A++ +KLE    +    LQ++   + V   L +
Sbjct: 62  MEDIIFSGAEH--------RKAQNYAEVKLKLENSSGK----LQVDSTEVTVTRRLYR 107


>gi|307637061|gb|ADN79511.1| hypothetical protein hp908_0382 [Helicobacter pylori 908]
 gi|325995652|gb|ADZ51057.1| hypothetical protein hp2018_03741 [Helicobacter pylori 2018]
 gi|325997248|gb|ADZ49456.1| hypothetical protein hp2017_03721 [Helicobacter pylori 2017]
          Length = 137

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+ +   ++    +  I  G N  GK+N+LEA+ +L  G+ 
Sbjct: 2  IQSVRIKNFKTFKDTQIDGFTKLNIITGQNNAGKSNLLEALYYL-VGKS 49


>gi|227874700|ref|ZP_03992860.1| SMC domain protein [Mobiluncus mulieris ATCC 35243]
 gi|227844712|gb|EEJ54861.1| SMC domain protein [Mobiluncus mulieris ATCC 35243]
          Length = 395

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + I+   I    +     L      T+ +G NG GKTN+L  I  LS  
Sbjct: 1  MAIRSFRIRNLLSIRDTTLELVTPVTLLIGPNGAGKTNLLRGIELLSRL 49


>gi|209946238|gb|ACI97350.1| SMC1 [Drosophila melanogaster]
          Length = 306

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|153870438|ref|ZP_01999840.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152073094|gb|EDN70158.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 402

 Score = 53.0 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 55/407 (13%), Positives = 111/407 (27%), Gaps = 82/407 (20%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-------RR 58
           +I+ + +  FR Y  L L       +F+G NG GKT + +  SFLS            R 
Sbjct: 4   QIEQIKVKNFRLYKDLHLENLQPFNVFLGANGSGKTTLFKVFSFLSTCLKENVTVAVNRE 63

Query: 59  ASYADVT---RIGSPSFFSTFARVEGMEG-----LADISIKLETRDDR---SVRCLQIND 107
             + +V          F     +    E      LA   +K+     +       L+   
Sbjct: 64  GGFKEVITRNSHPEKDFIEFEIKFRNFEQGEKSPLATYHLKIGFNRGKVFIKKEVLKYRR 123

Query: 108 VVIRVVDELNKHLRISWLV----PSMDRIFSGLSMERRR--------FLDRMVFAIDPRH 155
                      + +         P  ++  S    ER             + +   +   
Sbjct: 124 GRNGKPWHFLDYSKGKGFATKNEPDEEQERSKAKEEREEQPLGAEDILALKGLGQFER-- 181

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSS----IEAQMAELGVKINIARVEMINALSSL 211
            + +  F  L+      L     +           + Q++  G          +  ++S 
Sbjct: 182 YKTIKSFRTLLEQ---WLVSNLQNEEMRKINEVGADQQLSRSGNN--------LAQVASF 230

Query: 212 IMEYVQKENFPHIKLSLTGFLDGK-FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
           + EY  K     +             D +     +   K   +      +S+ T  G   
Sbjct: 231 LHEYHPKIFKTILTKMKQRVPGIDNVDITINEAGQILLKFGDNSFTDPFISKYTSDGT-- 288

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                                       I +    ++ +     P+L ++E   +L    
Sbjct: 289 ----------------------------IKMFAYLVLLHDPNPRPLLCIEEPENYLYSTL 320

Query: 331 RNALFRIVTDI---GSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
              L   + +    G Q+F++       D+L    +   +   Q + 
Sbjct: 321 LRELAAELKEYAVRGGQVFVSTHSPEFVDALK-IEELFLVKKEQGIS 366


>gi|238852562|ref|ZP_04642972.1| DNA repair protein RecN [Lactobacillus gasseri 202-4]
 gi|238834708|gb|EEQ26935.1| DNA repair protein RecN [Lactobacillus gasseri 202-4]
          Length = 559

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 86/259 (33%), Gaps = 55/259 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L++ F  + T+ +G+ G GK+ I++A+S L   R     + +++ R
Sbjct: 2   LVELDIKNFAIIKTLKVRFQEKMTVLIGETGAGKSIIIDAVSLLLGSR-----AQSEMIR 56

Query: 67  IGSP--------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VI 110
            G                          G+    D  I       +    ++IN     I
Sbjct: 57  SGEEKAVITGLFVLSEQKELIEKLCEKYGLPFEDDQLIISRELTHKGRNVVRINGQLTTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+ K+L +     +  +I     M+  R +D +     P  +  + D+        
Sbjct: 117 NVLREIGKNL-VDIHGQNDQQIL----MDPERQIDLIDNYAKPEFKDELQDY-------- 163

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                   D      + +Q+                 L     E  QK++    + +   
Sbjct: 164 ------AADFETWRHLTSQL---------------RKLREDAQEIAQKQDILEFQNNELE 202

Query: 231 FLDGKFDQSFCALKEEYAK 249
             D         L+EE+ +
Sbjct: 203 SADLTDPDEDEKLEEEFNE 221


>gi|254517359|ref|ZP_05129416.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
 gi|219674197|gb|EED30566.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
          Length = 624

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          ++++ ++IS ++N     L F+ +    IFVG NG GK+N LEA+
Sbjct: 1  MRLRSVSISRYKNLRDFSLDFEGEEFIDIFVGKNGCGKSNFLEAL 45


>gi|209946250|gb|ACI97356.1| SMC1 [Drosophila melanogaster]
          Length = 306

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|209946216|gb|ACI97339.1| SMC1 [Drosophila melanogaster]
 gi|209946218|gb|ACI97340.1| SMC1 [Drosophila simulans]
 gi|209946224|gb|ACI97343.1| SMC1 [Drosophila melanogaster]
 gi|209946226|gb|ACI97344.1| SMC1 [Drosophila melanogaster]
 gi|209946230|gb|ACI97346.1| SMC1 [Drosophila melanogaster]
 gi|209946232|gb|ACI97347.1| SMC1 [Drosophila melanogaster]
 gi|209946234|gb|ACI97348.1| SMC1 [Drosophila melanogaster]
 gi|209946236|gb|ACI97349.1| SMC1 [Drosophila melanogaster]
 gi|209946248|gb|ACI97355.1| SMC1 [Drosophila melanogaster]
 gi|209946252|gb|ACI97357.1| SMC1 [Drosophila melanogaster]
 gi|209946254|gb|ACI97358.1| SMC1 [Drosophila melanogaster]
 gi|209946260|gb|ACI97361.1| SMC1 [Drosophila melanogaster]
          Length = 306

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|161521384|ref|YP_001584811.1| ATP-dependent OLD family endonuclease [Burkholderia multivorans
          ATCC 17616]
 gi|189352449|ref|YP_001948076.1| probable bacteriophage protein [Burkholderia multivorans ATCC
          17616]
 gi|327198026|ref|YP_004306395.1| gp28 [Burkholderia phage KS5]
 gi|160345434|gb|ABX18519.1| ATP-dependent endonuclease of the OLD family-like protein
          [Burkholderia multivorans ATCC 17616]
 gi|189336471|dbj|BAG45540.1| probable bacteriophage protein [Burkholderia multivorans ATCC
          17616]
 gi|310657160|gb|ADP02275.1| gp28 [Burkholderia phage KS5]
          Length = 626

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +KI+ + I  FR    + + FD+  T  +G NG GK+ +L A+ +   GR
Sbjct: 1  MKIQSVRIKNFRTLKDVAIPFDS-VTTLIGPNGTGKSTVLRALDWFFNGR 49


>gi|330943475|gb|EGH45818.1| RecF/RecN/SMC N domain protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 636

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 65/402 (16%), Positives = 127/402 (31%), Gaps = 82/402 (20%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS------------ 51
           + ++ L++  F+ +     + F     + VG+NG GKT ++ AI  L             
Sbjct: 3   MYLRALDVDGFKCFGEPFTIEFHDGLNVLVGENGAGKTGVISAIRQLFNDSESGKRIISE 62

Query: 52  --PGRGF-RRASYADVTRIGS------PSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
               +GF   A  A+  +I +            F    G    A ++     ++ R    
Sbjct: 63  RDFYKGFDVGAVPAESIQIQATFSDLDKDDVIAFEDWCGNHDEAKLTFTALNQESRGRFR 122

Query: 103 LQ--INDVVIRVVD-ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
                     + +D E   ++   +L P    +    +  R                 R 
Sbjct: 123 HHTYGGHEYTKALDTETLDYIHCVYLPP----LRDAETKLRE---------------GRQ 163

Query: 160 IDFERLMRGRNRLLTEG---YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
               RL++    L  +       +     +E  + +   +++ +    I   +  I E +
Sbjct: 164 SRLARLLK---ALCRKDLETARKAGELHPLEQHVGDFNRELSESDKFAIKLANQRIGENL 220

Query: 217 QKENFPHIKL-SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
           +     H+   ++  F +  F +    L+  Y   +      D+   R+L          
Sbjct: 221 KAALGMHLSQGTMIQFSEVSFSRIVEGLRLLYFPNISQA---DATQFRSL---------- 267

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARL-ISNTTGFAP---ILLLDEISAHLDEDKR 331
                       S G   ++ +   LA   L      G      +LL++E  AHL    +
Sbjct: 268 ---------EENSLGYNNLLYIASILAELILEAEEDRGEETYLRLLLIEEPEAHLHPQLQ 318

Query: 332 NALFRI----VTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
             L R         G Q+ +T T  +V  +       + ISN
Sbjct: 319 LRLLRHLKTVAEARGMQVIIT-THSTVISAAVSVDHIIHISN 359


>gi|320095175|ref|ZP_08026881.1| hypothetical protein HMPREF9005_1493 [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977880|gb|EFW09517.1| hypothetical protein HMPREF9005_1493 [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 383

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 26/137 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRG----- 55
           ++   ++I  +RN+  LR     +    VG N  GK+N+L+   FL    +PG G     
Sbjct: 1   MQFTHVHIRNWRNFRDLRFNVGPRL-FIVGPNASGKSNLLDVFRFLGDIVAPGGGVAHAV 59

Query: 56  ------------FRRASYADVT----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99
                       F R   +       R G   +  T    +   G   + I+ E  +   
Sbjct: 60  ERRGGYKKIRSLFSRQHPSPTIDVTMRDGEEEWCYTLTLRQEGSGRRRVLIEEEKVEKNG 119

Query: 100 VRCLQINDVVIRVVDEL 116
              L   +   R   EL
Sbjct: 120 RAVLSRPNEQDREDPEL 136


>gi|126658967|ref|ZP_01730109.1| hypothetical protein CY0110_26732 [Cyanothece sp. CCY0110]
 gi|126619765|gb|EAZ90492.1| hypothetical protein CY0110_26732 [Cyanothece sp. CCY0110]
          Length = 405

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 64/383 (16%), Positives = 134/383 (34%), Gaps = 59/383 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQH---TIFVG-DNGVGKTNILEAISFLSPGRGFRRAS 60
           +K+  +++  FRN  ++ L F+         +G +NG GK+ +L+ I  L        + 
Sbjct: 1   MKLLKVSVPNFRNLKNVELTFEPSLKPAVFPIGSENGGGKSTLLQLIFVLLTC-----SL 55

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             D T             S  A++E +     I +  E   + +    ++ D+ ++  D+
Sbjct: 56  DDDKTEFLENFLSSVKDDSLIAKIELIYQEQIIDLTFECITNSNNEYKELTDL-LKTQDK 114

Query: 116 LNKHLRIS----WLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRRR--MIDFERLMRG 168
             ++         L+P   R         ++   R++ F  + +      +ID+++ +  
Sbjct: 115 YIENFENIKDKRILIPRDTREIKEWKTRIKQIESRILDFQNNRKILLVNPLIDYKKYLII 174

Query: 169 RN---------RLLTEGY---------------FDSSWCSSIEAQMAELGVKINIARVEM 204
           +          R+L                    D     S+++  AE   K+N  R ++
Sbjct: 175 KTNSDDHQISYRMLKYAAKHTYLVTPPTQIFLFLDKEVKKSMDSNFAEYYNKVNDIREKI 234

Query: 205 I-----NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
                 N LS + + +  K+       +     + ++  +   L E++   L + + +  
Sbjct: 235 SNIYIYNQLSIIAITHAFKQAKEQDFKTALDNDNLEYGTALKELAEDFHDFLGNDKDIKP 294

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
            S  T I   R     +  +  +     S GE K       L     I        I+L+
Sbjct: 295 SSDMTSIIVKRKISENEVIE--LEPEELSHGELK------RLGLYAWIKYNNINDSIILI 346

Query: 320 DEISAHLDEDKRNALFRIVTDIG 342
           DEI   L  D +  +   +   G
Sbjct: 347 DEIENGLHPDWQYNIVNELASWG 369


>gi|222641073|gb|EEE69205.1| hypothetical protein OsJ_28406 [Oryza sativa Japonica Group]
          Length = 1039

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 92/272 (33%), Gaps = 39/272 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA--ISFLSPGRG-FRRASYAD 63
           I  + +  F  ++SL +          G NG GK+ +L A  I+F S  +   R A+  D
Sbjct: 5   ISRIRLENFMCHSSLHIELGQHVNFITGQNGSGKSAVLTALCIAFGSRAKSTQRAAALKD 64

Query: 64  VTR--------------IGSPSF----FSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
             +               G  +F    +    R+E     +  S+ L+ +  R V   + 
Sbjct: 65  FIKTDCSYAAIIVDINNQGEDAFKPEVYGDLVRLERRITESSSSMFLKDQHGRKVAHRKD 124

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
           +      + E+ +H  I    P           + R FL       + + + +      L
Sbjct: 125 D------LIEIIEHFNIDVENPC----VIMSQDKSREFLHSG----NNKDKFKFFFKATL 170

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           ++  N LL           + ++ + EL   I  A +E ++ L   I      E   H  
Sbjct: 171 LQHVNDLLLAIR---ELLDNADSVVQELEKSIKPAMME-LDELQQKIKNMEHIEEIAHEI 226

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            +L   L   +        EE   KL   ++ 
Sbjct: 227 DNLKKKLAWSWVYDVDRQIEEQTVKLLKLKER 258


>gi|121704612|ref|XP_001270569.1| DNA repair protein Rad18, putative [Aspergillus clavatus NRRL 1]
 gi|119398715|gb|EAW09143.1| DNA repair protein Rad18, putative [Aspergillus clavatus NRRL 1]
          Length = 1132

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/176 (13%), Positives = 52/176 (29%), Gaps = 26/176 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +   ++         VG NG GK+ +L AI+    G+     R  S   
Sbjct: 99  LERVECYNFMCHDHFQVELGPLINFIVGKNGSGKSAVLTAITLCLGGKASATNRGQSLKS 158

Query: 64  VTRIGSPSFFSTFARVEGMEG---------LADISIKLETRDDRSVRCLQINDVVIRV-- 112
             + G  S           +G            +            +    N  +I    
Sbjct: 159 FIKEGKESATIVVRIKNQGDGAYMPDDYGNSIIVERHFSKNGTSGFKIKAENGRIISTKK 218

Query: 113 --VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR 156
             +D +  +  + +  P        +   + +    ++ RF      +  +D  +R
Sbjct: 219 AELDSIIDYFTLQFDNPMNVLSQDMARQFLSTSSPADKYRFFVKGVQLEQLDQDYR 274


>gi|172056948|ref|YP_001813408.1| DNA repair protein RecN [Exiguobacterium sibiricum 255-15]
 gi|171989469|gb|ACB60391.1| DNA repair protein RecN [Exiguobacterium sibiricum 255-15]
          Length = 569

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 62/378 (16%), Positives = 133/378 (35%), Gaps = 54/378 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L+I +F     L++ F    T+  G+ G GK+ +L+AI  L  GRG      A+ 
Sbjct: 1   MMLAELSIKQFAIIDQLQIDFKKGMTVLTGETGAGKSIVLDAIGLLIGGRG-----SAEF 55

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G        A +EG+  + D  +     ++     + + D +I +  +L    +   
Sbjct: 56  VRYGEDK-----AELEGLFMIEDGHMAYTLAEEYG---IDMEDGMIILRRDLFASGKSVC 107

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM---------------RGR 169
            V       + L    R  +D      + +H       + ++               + R
Sbjct: 108 RVNHKLVTLTILREFGRALVDLH-GQHEHQHLMESTYHQTILDDFGHATIAPILERYQER 166

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELG-------VKINIARVEMINALSSLIMEYVQKENFP 222
            +   E        +  E ++A+          +I+ A++        L+ E  +  NF 
Sbjct: 167 FQQYEEKRDALQALAQSEQELAQRIDLLSFQTEEIDSAKLRTGEE-EDLLSERNRLANFE 225

Query: 223 HIKLSLTGFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRR--TLIGPHRS--DLIVD 276
            +  SL+   D   D+     ++ +   +        D  S +  TL     +  ++   
Sbjct: 226 KLHASLSAAYDALHDERRGIDSVGDAMRELQQASSIDDEFSGQSDTLANAFYALEEVGYA 285

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG---FAPILLLDEISAHLD-----E 328
             D+  T+   S    ++  + + L+  + +    G      I    +I   LD     +
Sbjct: 286 VRDQLETLEFDS---NRLDEIELRLSVFQQLKRKYGATIEEVIAYGKKIGVELDTMTNRD 342

Query: 329 DKRNALFRIVTDIGSQIF 346
           ++   L   V  + +++F
Sbjct: 343 ERIEKLKTEVEQLETELF 360


>gi|225858987|ref|YP_002740497.1| DNA repair protein RecN [Streptococcus pneumoniae 70585]
 gi|225720044|gb|ACO15898.1| DNA repair protein RecN [Streptococcus pneumoniae 70585]
 gi|301794291|emb|CBW36715.1| putative DNA repair protein [Streptococcus pneumoniae INV104]
          Length = 555

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 27/209 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+P                      +G+E   +I I+ E          ++N  ++   
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREI-LQNGRSISRVNGQMVNLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMR 167
           V+  + +HL         + +              F D   + +   ++     + ++ +
Sbjct: 116 VLRTIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRK 173

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
               +        +    +E QMAE+   
Sbjct: 174 QVLEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|209946258|gb|ACI97360.1| SMC1 [Drosophila melanogaster]
 gi|209946262|gb|ACI97362.1| SMC1 [Drosophila melanogaster]
          Length = 306

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|209946222|gb|ACI97342.1| SMC1 [Drosophila melanogaster]
          Length = 306

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|254448804|ref|ZP_05062261.1| DNA repair protein RecN [gamma proteobacterium HTCC5015]
 gi|198261645|gb|EDY85933.1| DNA repair protein RecN [gamma proteobacterium HTCC5015]
          Length = 557

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 94/283 (33%), Gaps = 20/283 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +  L+I +F    SL +  ++  T   G+ G GK+ +L+A+  +    +     R+ +  
Sbjct: 2   LTHLHIRDFAIIDSLDVNLESGLTSLTGETGAGKSILLDALGLVLGDRANSDSVRQGANK 61

Query: 63  DVT--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVV--IRVVDELN 117
                     +       +E  +  AD    L        R    +N     + V+ ++ 
Sbjct: 62  TNIIASFNISALPELQHWLEEHDLEADDECLLRRVISADGRSKAYLNGQPTTLSVLKKVG 121

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRM-----VFAIDPRHRRRMIDFERLMRGRNRL 172
           + L           +     ++RRR  D       V  +  R        ++ +  R   
Sbjct: 122 EQLVNIHGQHEHQHLLKRS-VQRRRLDDYGKLADSVTQVAARFYD-WQSLKQQLDTRQSG 179

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                  +     ++ Q++EL   +++A  E               +     + +L    
Sbjct: 180 ---EQDRAERLELLQFQLSELDA-LSLAEGEWQTLCEEQSRLAHADQLLRSSETALHQLY 235

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
           DG+   S  ++   +A +L    ++D+       G   + + +
Sbjct: 236 DGEESPSASSVLSRHASQLEQLTELDNHLGPIAAGLRSAQIQL 278


>gi|262091693|gb|ACY25283.1| DNA repair protein RecN [uncultured actinobacterium]
          Length = 401

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 18/123 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L I       +L LVF        G+ G GKT ++EAI+ L  GR     +
Sbjct: 1   MLTELRIENLGIV-----KNLELVFSDGVIALTGETGAGKTMLVEAINLLIGGR-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLAD---ISIKLETRDDRSVRCLQINDVVIRVVDELN 117
            A V R G+       ARVEG   + D   I  ++   D RS   +      +  + EL 
Sbjct: 51  DATVVRHGTQE-----ARVEGRFVVGDNETILCRVVPLDGRSRAYVNGRLATVSQLSELG 105

Query: 118 KHL 120
           + L
Sbjct: 106 QEL 108


>gi|256843402|ref|ZP_05548890.1| DNA repair protein RecN [Lactobacillus crispatus 125-2-CHN]
 gi|293380306|ref|ZP_06626380.1| DNA repair protein RecN [Lactobacillus crispatus 214-1]
 gi|256614822|gb|EEU20023.1| DNA repair protein RecN [Lactobacillus crispatus 125-2-CHN]
 gi|290923121|gb|EFE00050.1| DNA repair protein RecN [Lactobacillus crispatus 214-1]
          Length = 560

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 91/259 (35%), Gaps = 55/259 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG       ++ R
Sbjct: 2   LVELDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRG-----QKEMIR 56

Query: 67  IGSPSFFST-----------FARVEGMEGLADISIKLETRDD---RSVRCLQINDV--VI 110
            G      T            A +    GL     +L    +   +    ++IN     I
Sbjct: 57  SGESKAIITGLFELDDQKEKIAELCDQYGLPHDDDQLVISRELAVKGRNVVRINGQLTTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+  +L +        +I     M++ R +D +        +  +  ++       
Sbjct: 117 NVLREIGSYL-VDIHGQHDQQIL----MDQDRQIDLVDNYAPASFKADLATYQ------- 164

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                   D +    + +Q+                 L     E  QK++    + +   
Sbjct: 165 -------TDYAQWQKLTSQLL---------------HLRQDAQELAQKQDILQFQNNELE 202

Query: 231 FLDGKFDQSFCALKEEYAK 249
             D +  Q    L+EEY +
Sbjct: 203 AADLEDPQEDEKLEEEYNE 221


>gi|209946214|gb|ACI97338.1| SMC1 [Drosophila simulans]
          Length = 306

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|195159104|ref|XP_002020422.1| GL13523 [Drosophila persimilis]
 gi|194117191|gb|EDW39234.1| GL13523 [Drosophila persimilis]
          Length = 1038

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 8/132 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           +IK + +  F +Y  +         +  G NG GK+ I+ AI     G      R AS +
Sbjct: 15  RIKSVYVKHFVSYKEVTYYPSKYLNVLTGPNGSGKSTIVAAIMIGLGGEPQLLDRSASLS 74

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D  + G              E   +   ++ + D  S   ++      +    +     +
Sbjct: 75  DYIQSGETEATIAVTIYGRSEHTTEAFRRIISSDGTSSFYVKNIKQTKKNFQNIVASYNL 134

Query: 123 SW-----LVPSM 129
                   +P  
Sbjct: 135 QVGNLCQFMPQD 146


>gi|251798284|ref|YP_003013015.1| hypothetical protein Pjdr2_4307 [Paenibacillus sp. JDR-2]
 gi|247545910|gb|ACT02929.1| conserved hypothetical protein [Paenibacillus sp. JDR-2]
          Length = 695

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE 45
          ++I+ + I  FR      +  D + T+ VG N  GKT+  E
Sbjct: 1  MRIEKVKIKNFRLLHDAEITLDEKTTVIVGRNNSGKTSFTE 41


>gi|154300358|ref|XP_001550595.1| hypothetical protein BC1G_11368 [Botryotinia fuckeliana B05.10]
 gi|150856691|gb|EDN31883.1| hypothetical protein BC1G_11368 [Botryotinia fuckeliana B05.10]
          Length = 1158

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F N+ +L++         VG+NG GK+ +L  I+    G+     R +S   
Sbjct: 111 IEEIQCVNFMNHKNLKVPLGPLINFVVGENGAGKSAVLTGITLCLGGKPSATNRGSSMKS 170

Query: 64  VTRIGSPSF 72
           + + G+   
Sbjct: 171 LIKTGTDRG 179


>gi|332528612|ref|ZP_08404594.1| DNA repair protein RecN [Hylemonella gracilis ATCC 19624]
 gi|332041928|gb|EGI78272.1| DNA repair protein RecN [Hylemonella gracilis ATCC 19624]
          Length = 562

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + +K + + +F   + L L F    T+  G+ G GK+ +++A+  ++  R     +   +
Sbjct: 1  MALKRIVLRDFVIISELDLEFAPGFTVLTGETGAGKSILIDALQLVTGAR-----ADTGL 55

Query: 65 TRIGS 69
           R G+
Sbjct: 56 IREGA 60


>gi|312863962|ref|ZP_07724199.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
 gi|311100528|gb|EFQ58734.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
          Length = 601

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 65/382 (17%), Positives = 120/382 (31%), Gaps = 50/382 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++K + I+ FR Y    +V     T F+G N VGK+ ILEA+      +          
Sbjct: 1   MRLKQIKINNFRGYKDETIVDFDNLTAFIGKNDVGKSTILEALEIFFNNKMVVCEKDDLS 60

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDD---RSVRCLQINDVVIRVVDELNKHL 120
             + S S F T    E  +  + D S K   +D+    S   L+I         +     
Sbjct: 61  VGVDSDSIFITCIFDELPDEIVVDTSSKTSLKDENLLNSNGDLEIKKTFKCSSAKPKPET 120

Query: 121 RISWLVPSMDR----IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           +I    P  D     +       ++R +D  +            D  +  +  N  + + 
Sbjct: 121 KIICNHPIDDNYNDLLLLKQVDLKKRAVDLGI------------DENKYDKRSNVSIRQA 168

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
              S    +I+    E+  +       +I     +   +    +       +   +    
Sbjct: 169 ILSSKRDLTIKEIELEVTKEDAKKVYGVIETFLPIYALFQSDRSSSDSDKEIADPMSVAV 228

Query: 237 DQSFCALKEEYAKKLFDGRKMDSM-SRRTLIGPHRSD----------------------L 273
            Q+   L+ E  K   + +K     + RTL      D                      L
Sbjct: 229 SQALQELQTEINKIKSEVQKKAIETAGRTLAKLQEMDEDLAASLVPEFKSEPKFDSLFKL 288

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR--LISNTTGFAPILLLDEISAHLDEDKR 331
            +   D       GS G ++++L+  F A A   L       + I   +E         +
Sbjct: 289 SIKSDDDISINKRGS-GVRRLILLNFFRAEAERKLSEVERNKSIIYAFEEPETSQHPSHQ 347

Query: 332 ----NALFRIVTDIGSQIFMTG 349
                A   + +   +QI +T 
Sbjct: 348 KLLIEAFLELSSKENTQIILTT 369


>gi|300936912|ref|ZP_07151799.1| RecF/RecN/SMC protein [Escherichia coli MS 21-1]
 gi|300458023|gb|EFK21516.1| RecF/RecN/SMC protein [Escherichia coli MS 21-1]
          Length = 452

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 60/371 (16%), Positives = 117/371 (31%), Gaps = 51/371 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           + I+ L ++    +  L +            T+F+G+NG GKT+IL++++        R 
Sbjct: 2   MNIRTLKLTNLGRFEELDVHLAPVEEFKSNVTVFIGNNGAGKTSILKSLATSLSWFVARV 61

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            +       G+ S     A + G    A I +++      +        ++ R       
Sbjct: 62  RTEK-----GNGSPIPEDAILNGR-SSATIELQVLNTHPATEAATPYRWLLARTASGKKS 115

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
               S    S    F      +       + A  P   R ++D    ++ R+  L    +
Sbjct: 116 TTASSLQEASQLAAFYRDQYTQNSGASFPLIAFYPV-ERVVLDVPLKIKERHNFLQLDGY 174

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           D++    I+                               EN   +   +   L  + D 
Sbjct: 175 DNALNQGID-----------------FRRFFEWFRNREDAENESGLPQDVLDKLSTRIDL 217

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIG---PHRSDLIVDY----------CDKAITIA 285
               L       +   R     + RT I    P  S+L V              + + + 
Sbjct: 218 DNTVL-NALTAIMASSRDRQLTAVRTAISRFMPGFSNLRVRRKPRLHMSIDKNGQTLNVL 276

Query: 286 HGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
             S GE+ ++ +       LA    ++ N      I+L+DE+  HL    +  + + +T 
Sbjct: 277 QLSQGEKSLMALVGDIARRLAMMNPMLENPLNGEGIVLIDEVDMHLHPTWQRTIIQRLTT 336

Query: 341 IG--SQIFMTG 349
                Q  +T 
Sbjct: 337 TFPHCQFVLTT 347


>gi|256075737|ref|XP_002574173.1| chondroitin sulfate proteoglycan [Schistosoma mansoni]
 gi|238659371|emb|CAZ30406.1| Structural maintenance of chromosome 3 (Chondroitin sulfate
           proteoglycan 6) (Chromosome segregation protein SmcD)
           (Bamacan) (Basement membrane-associated chondroitin
           proteoglycan) (Mad member-interacting protein 1),
           putative [Schistosoma mansoni]
          Length = 1234

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYA 62
           ++K++ +  +++Y     +   +  T  +G NG GK+N+++AISF+     R  R     
Sbjct: 7   RLKYIELENYKSYKGKQVIGPFSVFTAIIGPNGSGKSNLMDAISFVLGENTRHLRVRRLN 66

Query: 63  DVTRIGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
           D+   GS      +  A V  +  + D   K  +R         +IN V +R
Sbjct: 67  DLI-HGSVVGKPVAKSASVTAVYEMPDGEEKRFSRVIHGNTSEYRINGVSVR 117


>gi|323340827|ref|ZP_08081079.1| DNA repair protein RecN [Lactobacillus ruminis ATCC 25644]
 gi|323091950|gb|EFZ34570.1| DNA repair protein RecN [Lactobacillus ruminis ATCC 25644]
          Length = 562

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 67/197 (34%), Gaps = 22/197 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F     + L F +Q T+  G+ G GK+ I++A+  LS GRG       D  R
Sbjct: 2   LQELTIRDFAIIEKMDLEFQSQMTVLTGETGAGKSIIIDALGLLSGGRG-----SVDFIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIR-- 111
            G+        F      +  + L +  I +E+                 +IN  ++   
Sbjct: 57  KGANKAVIQGLFDVPGDSKTNDVLDEFGIDVESDGLILQRDIYRSGKNICRINGAMVNLT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            +  + + L           +         + LD    ++ P        +   ++ +  
Sbjct: 117 TLRRVGETLIDIHGQNEHQELMH--PENHIKLLDGFDNSLAPLLNEYHERYADFLKKKKA 174

Query: 172 LLTEGYFDSSWCSSIEA 188
           L      +  W   ++ 
Sbjct: 175 LEKRETNEKQWAQRMDM 191


>gi|209946240|gb|ACI97351.1| SMC1 [Drosophila melanogaster]
          Length = 306

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|209946228|gb|ACI97345.1| SMC1 [Drosophila melanogaster]
          Length = 306

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|33355825|gb|AAQ16246.1| unknown [Enterococcus faecalis]
          Length = 263

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +K + + I  FRN+ ++ L    +  IF G N VGKTN L A+ +
Sbjct: 8  MKFEKVVIKNFRNFDNVELDLSNK-NIFFGLNDVGKTNFLYALRY 51


>gi|299769257|ref|YP_003731283.1| hypothetical protein AOLE_05065 [Acinetobacter sp. DR1]
 gi|298699345|gb|ADI89910.1| hypothetical protein AOLE_05065 [Acinetobacter sp. DR1]
          Length = 215

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 17/124 (13%)

Query: 5   IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAI--SFLSPGRGF---RR 58
           +KI  + + +      L+L   +++  I  G+NGVGKTNIL+AI  SF    +     R 
Sbjct: 1   MKIHSIELKDVGGIPYLKLENLNSKMNIICGENGVGKTNILDAIAASFSQFDKNHVRKRA 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            S   +  I               +G +DI + +   +        +N+        L  
Sbjct: 61  GSDKAIITI-----------KHDKKGSSDIHVDITDFEPNESDYFLLNNKNYEENKHLML 109

Query: 119 HLRI 122
           +++ 
Sbjct: 110 YIKT 113


>gi|237809168|ref|YP_002893608.1| hypothetical protein Tola_2427 [Tolumonas auensis DSM 9187]
 gi|237501429|gb|ACQ94022.1| conserved hypothetical protein [Tolumonas auensis DSM 9187]
          Length = 595

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 57/356 (16%), Positives = 115/356 (32%), Gaps = 53/356 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           ++I  + +  F N++ + +       + VG+N VGK+N +  +   L PG   R      
Sbjct: 1   MRISRVRLINFANFSDVDIKTGDSI-VIVGENKVGKSNFIRGLQLILDPGLSER---DRQ 56

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +    S   F      + +  + ++S+ L    D                  L  HL   
Sbjct: 57  L----SIEHFWDGLVEDKIGKIIEVSVDLTDFTDNP---------------RLMAHLNDC 97

Query: 124 WLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            + P       G  M  R   RF  +      P     + D+E ++ G N          
Sbjct: 98  VIDP-------GPPMTARLTYRFQPKAGLGRAP---ESLKDYEYVIFGGNDPEMHVGSAF 147

Query: 181 SWCSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL-----D 233
                I+ Q+A    +  +   R   +  L   + E + ++    I+  +          
Sbjct: 148 RRMLPIDVQVALRDAEKDLASWRNSPLRPLIEDLAESLDEDAREEIQNQVDDAQRELAGH 207

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD-----LIVDYCDKAITIAHGS 288
            +   +   + E       +   +        + P R D     L +   +    +   S
Sbjct: 208 AQVVATANRISERLISIAGEQHAVPVSLG---LAPTRVDALLRSLRLLIDNGIRGVGDAS 264

Query: 289 TGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
            G   ++ + +  L   RL+S+        +++E  AHL    +  ++R     G 
Sbjct: 265 LGTANLIFLALKSLELDRLVSDGERDHTFFVVEEPEAHLHPHVQRLVYRYFLGTGG 320


>gi|255933239|ref|XP_002558090.1| Pc12g12820 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582709|emb|CAP80909.1| Pc12g12820 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1199

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 77/270 (28%), Gaps = 28/270 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + +K + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRSVRCLQINDVVIRVVD 114
                          A VE +   +D         + L            ++       D
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSDDRFPTGKPEVVLRRTIGIKKDEYTLDRKNATKND 120

Query: 115 ELNKHLRISWLVPSMDRIFSGLS-------MERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
            +N      +   +   I             +  R +     A    +  R  +  ++M 
Sbjct: 121 VMNLLESAGFSRSNPYYIVPQGRVTALTNMKDSERLVLLKEVAGTQVYEARRSESLKIMN 180

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
             N        D      I  ++AEL  +         + L S   +  ++    +   S
Sbjct: 181 ETNS--KRAKIDE-LLDYINERLAELEEEK--------DELRSYQEKDKERRCLEYTIYS 229

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           L     GK        ++   +   + R  
Sbjct: 230 LEQQEIGKVLNEIEERRQNGVEDADNNRDQ 259



 Score = 39.9 bits (92), Expect = 0.59,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 23/196 (11%)

Query: 161  DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE- 219
             +    + R  L T      +   SI+  ++ L  + + A       +S       +K  
Sbjct: 979  QYNSFTKQRETLTTRRSELDASQKSIDDLISVLDQRKDEAIERTFKQVSREFHNVFEKLV 1038

Query: 220  --NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
                  + +        + D    +  EE  + + +            +G   S      
Sbjct: 1039 PAGRGRLIIQRKTDRATRLDDDLDSDDEEARQSVEN-----------YVGVGISVSFNSK 1087

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
             D    I   S G++ +  + +  A           AP  L DEI A+LD   R A+ ++
Sbjct: 1088 HDDQQRIQQLSGGQKSLCALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQM 1142

Query: 338  VTDI----GSQIFMTG 349
            +  I      Q   T 
Sbjct: 1143 LKSISDSTNGQFICTT 1158


>gi|209524524|ref|ZP_03273072.1| SMC domain protein [Arthrospira maxima CS-328]
 gi|209494982|gb|EDZ95289.1| SMC domain protein [Arthrospira maxima CS-328]
          Length = 397

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I+ + I  F++  S  L    +   F+G NG GK+N+LEA+  L 
Sbjct: 4  IREVTIRGFKSIYSATLELG-RVNCFIGANGAGKSNLLEALGVLG 47


>gi|145515950|ref|XP_001443869.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124411269|emb|CAK76472.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1179

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGR----GFRR 58
          + IK + I  F++YA   +    D +     G NG GK+NIL+AI F           R 
Sbjct: 1  MWIKEIIIEGFKSYAQRTVITNLDPEFNAITGLNGSGKSNILDAILFCLGLSKEYDTLRI 60

Query: 59 ASYADVT 65
              ++ 
Sbjct: 61 KKLQELI 67


>gi|90961515|ref|YP_535431.1| DNA repair protein [Lactobacillus salivarius UCC118]
 gi|227890602|ref|ZP_04008407.1| DNA repair protein [Lactobacillus salivarius ATCC 11741]
 gi|301300974|ref|ZP_07207139.1| DNA repair protein RecN [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820709|gb|ABD99348.1| DNA repair protein [Lactobacillus salivarius UCC118]
 gi|227867540|gb|EEJ74961.1| DNA repair protein [Lactobacillus salivarius ATCC 11741]
 gi|300851441|gb|EFK79160.1| DNA repair protein RecN [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 555

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 70/200 (35%), Gaps = 28/200 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F     +++ F  + T+  G+ G GK+ I++A+  L+ GRG       +  R
Sbjct: 2   LQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRG-----STEFIR 56

Query: 67  IGSPSFFSTFARV------------EGMEGLADISIKLETRDDRSVRCL-QIND--VVIR 111
            G                       E      D  I L+    R  R + +IN   V + 
Sbjct: 57  KGEKKAVIQGLFTLPREANTYNILEEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLA 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR---MVFAIDPRHRRRMIDFERLMRG 168
            + ++ + L           +           LD        +  +++    ++ +L   
Sbjct: 117 TLRKVGETLIDIHGQNEHQELMK--PENHIDLLDEYDKKTSQLRNQYQVVYQNYRKL--- 171

Query: 169 RNRLLTEGYFDSSWCSSIEA 188
           +  +  +   + +W   ++ 
Sbjct: 172 KLSMEKKEADEKAWAQRLDM 191


>gi|330823577|ref|YP_004386880.1| DNA repair protein RecN [Alicycliphilus denitrificans K601]
 gi|329308949|gb|AEB83364.1| DNA repair protein RecN [Alicycliphilus denitrificans K601]
          Length = 557

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 18/129 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + + +F    +L L   A  T+  G+ G GK+ +++A+  L   R     +   V
Sbjct: 1   MALRRIALRDFVIVQALDLDLHAGFTVLTGETGAGKSILIDALQLLLGAR-----ADTGV 55

Query: 65  TRIGSPSF----------FSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVV--IR 111
            R G+              +  A +E      D ++ L    D   +    IN +     
Sbjct: 56  IREGAQRADICAEFDAGTAALGAWLEEAGIAHDGALLLRRTVDLQGKSRAWINGIPATAA 115

Query: 112 VVDELNKHL 120
            +  L +HL
Sbjct: 116 QMRALGEHL 124


>gi|328554164|gb|AEB24656.1| factor for double strand breaks DNA repair and genetic
           recombination [Bacillus amyloliquefaciens TA208]
          Length = 576

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 89/255 (34%), Gaps = 39/255 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F+   T+  G+ G GK+ I++A+S L  GRG      ++  R
Sbjct: 2   LAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRG-----SSEFVR 56

Query: 67  IGS-----PSFFST--------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--- 110
            G         F            R +G++   D+ +     +       ++N  ++   
Sbjct: 57  YGETKAELEGLFLLDSGHPVFEVCREQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIA 116

Query: 111 ------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                 R++ +++       L+     +         +F      +    +R     + +
Sbjct: 117 ALREIGRLLLDIHGQHDNQLLIEDDKHL-----ELLDKFAGAEAESALQAYREGYDRYMK 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQKENFPH 223
           L++   +L       +     I+ Q+ E+   K+ +   E++        E  Q  NF  
Sbjct: 172 LLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQE------ERKQISNFEK 225

Query: 224 IKLSLTGFLDGKFDQ 238
           I  SL    +    +
Sbjct: 226 IYESLQNAYNALRSE 240


>gi|226294424|gb|EEH49844.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1161

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 100/343 (29%), Gaps = 59/343 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +    +         VG NG GK+ IL AI+    G+     R  S   
Sbjct: 119 IERVECYNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTAITLCLGGKASVTNRGQSLKS 178

Query: 64  VTRIGSPSFFSTFARVEGMEGLAD---------ISIKLETRDDRSVRCLQINDVVIRV-- 112
             + G  S           +   +         +            +    N  V+    
Sbjct: 179 FIKEGKDSATIVVRIKNKGDSAYNPNEFGDSIIVERHFSRTGASGFKIKSSNGRVVSTKK 238

Query: 113 --VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHRR--- 157
             +D +  +  +    P        +   + +    E+ +F      +  +D  +R    
Sbjct: 239 SELDSITDYYALQIDNPMNVLSQDMARQFLSNSSPSEKYKFFLKGVQLEQLDQDYRLLEE 298

Query: 158 -----------RMIDFERLMRGRN------RLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                       +   + L   RN       L  +     +   ++ AQMA + V+    
Sbjct: 299 SIDQTEAKLSIHLDQIKELEVARNQTRAKLALSDKNETIRARVRNLRAQMAWVQVEEQEK 358

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           +    +A    I +  +K      +++    +  + D+   A+ E   +   + +  +  
Sbjct: 359 QRHSCDA---QIEQATRKIANLEAEVAEADEVFQEADREHNAILEAVREAKSELKAQE-- 413

Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                    R     +  D+ +   H    +Q+ +   +  A 
Sbjct: 414 --------DRGKAADERLDETVKERHELQAQQRTIRECLKAAE 448


>gi|198282434|ref|YP_002218755.1| ATP-dependent endonuclease, OLD family [Acidithiobacillus
          ferrooxidans ATCC 53993]
 gi|198246955|gb|ACH82548.1| ATP-dependent endonuclease, OLD family [Acidithiobacillus
          ferrooxidans ATCC 53993]
          Length = 773

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGR 54
          + +  L    FR     R+ F    TIFVG N  GKT+   AI  FLS G+
Sbjct: 1  MYVHSLAFKNFRRLKDARVDFADDLTIFVGANNSGKTSATHAIELFLSGGK 51


>gi|193212154|ref|YP_001998107.1| chromosome segregation protein SMC [Chlorobaculum parvum NCIB 8327]
 gi|193085631|gb|ACF10907.1| chromosome segregation protein SMC [Chlorobaculum parvum NCIB 8327]
          Length = 1183

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           + +  + +  F+++A  +R+ FD   T  VG NG GKTN+++AI   L   +    R   
Sbjct: 1   MYLSKIELFGFKSFAHRVRIHFDKGLTAIVGPNGCGKTNVVDAIRWVLGEQKSMLLRSPK 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
              +   G+      +F  V          +  E  +    R L  N 
Sbjct: 61  MESIIFNGTKRLKPLSFTEVSLTIENTRNVLPTEYTEVTITRRLYRNG 108



 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 16/188 (8%)

Query: 167  RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI--MEYVQKENFPHI 224
            + R   L +      +    E  + E   +    R++ + A    +   E   +E    I
Sbjct: 963  KERLAYLQKQK--EQFGGVNELALEEYDAE--KERLDFLTAQKEDLVSAEKQLRETIEEI 1018

Query: 225  KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY---CDKA 281
              +        FDQ        +        ++D +       P  + + +       K 
Sbjct: 1019 NRTALEKFRETFDQVRKNFIRIFHDLFDPEDEVDLLIHTAEDDPLEAHIQIVAKPRGKKP 1078

Query: 282  ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
            + I   S GE+ +  + +  A   +       +P  +LDE+ A LD+       +++   
Sbjct: 1079 LAIEQLSGGEKALTALSLLFAIYLV-----KPSPFCILDEVDAPLDDANVGRFIKLLKKF 1133

Query: 342  --GSQIFM 347
               +Q  +
Sbjct: 1134 ENNTQFII 1141


>gi|182684068|ref|YP_001835815.1| DNA repair protein RecN [Streptococcus pneumoniae CGSP14]
 gi|221231903|ref|YP_002511055.1| DNA repair protein [Streptococcus pneumoniae ATCC 700669]
 gi|182629402|gb|ACB90350.1| DNA repair protein RecN [Streptococcus pneumoniae CGSP14]
 gi|220674363|emb|CAR68912.1| putative DNA repair protein [Streptococcus pneumoniae ATCC 700669]
          Length = 555

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 77/208 (37%), Gaps = 25/208 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RS+  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL         + +              F D   + +   ++     + ++ + 
Sbjct: 117 LRTIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVK 196
              +        +    +E QMAE+   
Sbjct: 175 VLEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|325108710|ref|YP_004269778.1| chromosome segregation protein SMC [Planctomyces brasiliensis DSM
           5305]
 gi|324968978|gb|ADY59756.1| chromosome segregation protein SMC [Planctomyces brasiliensis DSM
           5305]
          Length = 1315

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 21/160 (13%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K L +  F+++A      F    T  VG NG GK+N+++A+ +L      +  R  + A
Sbjct: 2   LKSLEVYGFKSFADRTTFAFAPGTTCVVGPNGSGKSNVVDAMKWLLGDQSPKSLRGKNMA 61

Query: 63  DVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIRVV 113
           DV   GS S   S FA        ++  + +E  + R  R L         IN    R+ 
Sbjct: 62  DVIFNGSRSRKASGFAEATLSFDNSNDLLPIEYDEVRITRRLYQGGDSEYLINGETSRLK 121

Query: 114 DELNKHLRISWLVPSMDRI--------FSGLSMERRRFLD 145
           D     +       +   I          G    RR   D
Sbjct: 122 DIRELFMGTGAATSAYSIIEQGRVGQVLQGNPSTRRILFD 161


>gi|308493565|ref|XP_003108972.1| CRE-SMC-5 protein [Caenorhabditis remanei]
 gi|308247529|gb|EFO91481.1| CRE-SMC-5 protein [Caenorhabditis remanei]
          Length = 1092

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 8/126 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGF-RRASYAD 63
           +  +    F  Y     V  A   + +G NG GK++I+  I     G  +   R     +
Sbjct: 22  LLRVVFHNFLTYEHTCFVPTASLNMILGHNGSGKSSIICGICLACGGSPKSLGRSEKIIE 81

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKHLR 121
             R G    +      +  E     +++L  R  ++    ++N       D  EL K+  
Sbjct: 82  YIRHGCQEGYVEVTIAD--EKKGPQTVRLTIRIGKAP-EYKLNGAQATQSDVNELRKYYN 138

Query: 122 ISWLVP 127
           I    P
Sbjct: 139 IQIDNP 144


>gi|253701893|ref|YP_003023082.1| chromosome segregation protein SMC [Geobacter sp. M21]
 gi|251776743|gb|ACT19324.1| chromosome segregation protein SMC [Geobacter sp. M21]
          Length = 1176

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +KIK L I  F+++     L F+   T  VG NG GK+N+++AI ++      +  R  S
Sbjct: 1  MKIKRLEIHGFKSFQDKAVLDFNQPITGVVGPNGCGKSNVVDAIRWVMGEQSAKNLRGKS 60

Query: 61 YADVTRIGSPSF 72
            D+   G   F
Sbjct: 61 MEDII-FGGTEF 71


>gi|193216951|ref|YP_002000193.1| chromosome segregation ATPase Smc [Mycoplasma arthritidis 158L3-1]
 gi|193002274|gb|ACF07489.1| chromosome segregation ATPase Smc [Mycoplasma arthritidis 158L3-1]
          Length = 978

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 67/214 (31%), Gaps = 33/214 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           +K+  +    F+++A  + L+FD      +G NG GK+NI +AI   L        R  +
Sbjct: 1   MKLIKVEAHGFKSFADKVTLMFDGGVVAIIGPNGSGKSNINDAIRWVLGETSSKALRGDN 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI-----SIKLETRDDRSVRCLQINDVVI 110
             DV   GS      +        +  +    I     +I       +      IN  + 
Sbjct: 61  MEDVIFSGSKTEKEMNRAEVILTFDNRDRAVSIPHDFFTISRVLHRGKGQNEYYINGELA 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMID 161
           R  D + +    S +  S   I S              RR   +             M  
Sbjct: 121 RQKD-IKEIAMESGISKSSLAIISQGTISDIAEATPERRREIFEEASGT-------SMYR 172

Query: 162 FERLMRGRNRLLTEGYFDS--SWCSSIEAQMAEL 193
             ++   R    T+   D        +E Q+  L
Sbjct: 173 VRKIEAQRKLERTQEALDQITVLVQELEKQLKPL 206


>gi|75908453|ref|YP_322749.1| DNA repair protein RecN [Anabaena variabilis ATCC 29413]
 gi|75702178|gb|ABA21854.1| DNA replication and repair protein RecN [Anabaena variabilis ATCC
           29413]
          Length = 582

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 80/269 (29%), Gaps = 40/269 (14%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I  F     L L F A   +  G+ G GK+ IL+AI  +  G+       + V R G+
Sbjct: 5   LRIENFALIDQLELDFGAGLNVLTGETGAGKSIILDAIDAVLGGK-----VSSRVIRTGT 59

Query: 70  PSFFSTFAR-----------------VEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
                                     ++    +    I + T + RS    ++N V++  
Sbjct: 60  SRAMVEATFTTNPPLAAWLTEQEIDLIDDNSVVISREITVSTSNIRS--RSRVNGVLVNR 117

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERLMRG 168
                   R+  +      +  G S + R +LD      +             +++    
Sbjct: 118 QLMGGLRDRLVEITAQGQTVQVGQSAQVRDWLDMYGGDALIQQRQHIATAFSAYQQAHTN 177

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG----------VKINIARVEM--INALSSLIMEYV 216
             +  T           +  Q+ EL            ++   R  +  +  L  +  +  
Sbjct: 178 LEKRRTSERERLQQLDLLTYQVQELSTANLSDPQELEQLQQERERLNHVVDLQQMSYKIY 237

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           Q       +      L G  + +   + E
Sbjct: 238 QALYQTEDETLAVSDLLGDSEATLNDMVE 266


>gi|300856330|ref|YP_003781314.1| phage-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300436445|gb|ADK16212.1| phage-related protein [Clostridium ljungdahlii DSM 13528]
          Length = 661

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M+NRI +K L +  F+    L + F+       GDNG GKT + +A ++L   +      
Sbjct: 1   MSNRIVLKGLYLKNFKGIKELDIDFENTTN-IYGDNGTGKTTVFDAFAWLLFDK------ 53

Query: 61  YADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
            +    +        +   +  ++     S++++       + L+   V  +
Sbjct: 54  DSQNISKFDVQPLDKSNNIIHRIDTEVTGSLEIDGVKTVLRKILKEKWVKPK 105


>gi|293366801|ref|ZP_06613477.1| SMC family domain protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319102|gb|EFE59472.1| SMC family domain protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329736623|gb|EGG72889.1| chromosome segregation protein SMC [Staphylococcus epidermidis
           VCU045]
          Length = 1189

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 2   VYLKSIDAIGFKSFADHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGAK 61

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             D+   G+       FA V+         +++++ +    R L  +  
Sbjct: 62  MEDIIFSGAEHRKAQNFAEVKLKLDNHSQKLQIDSEELVVTRRLYRSGE 110



 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY---AKKLFDG 254
               R   +N   + + E   KE    I   +   ++G+F  +F A+++ +    K+LF G
Sbjct: 997  LNERYTFLNEQRTDLRE--AKETLEQIIHEMDKEVEGRFKTTFHAVQDHFTTVFKQLFGG 1054

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
             + +             D+IV    K +  ++  S GE+ +  + +  A  ++       
Sbjct: 1055 GQAELRLTEDDYLSAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKV-----RS 1109

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDIG--SQIFM 347
            AP ++LDE+ A LDE       + + ++   +Q  +
Sbjct: 1110 APFVILDEVEAALDEANVIRYAQYLNELSTETQFIV 1145


>gi|253689247|ref|YP_003018437.1| hypothetical protein PC1_2874 [Pectobacterium carotovorum subsp.
          carotovorum PC1]
 gi|251755825|gb|ACT13901.1| conserved hypothetical protein [Pectobacterium carotovorum subsp.
          carotovorum PC1]
          Length = 555

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ FR++   +++  A  T+  G N VGKT IL A+ +L
Sbjct: 1  MKLIKLVLTNFRSFKETQVIQFAPVTLLFGPNSVGKTTILMALFYL 46


>gi|254383773|ref|ZP_04999121.1| conserved hypothetical protein [Streptomyces sp. Mg1]
 gi|194342666|gb|EDX23632.1| conserved hypothetical protein [Streptomyces sp. Mg1]
          Length = 819

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 3   NRIKIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-RGFRR 58
            R+ +  L ++ FR     A L L       + VG NG GK+++ +AI     G R  R 
Sbjct: 66  GRVYLGSLAVNGFRGIGPRARLSLSPRPGVNLVVGRNGSGKSSLADAIEVGFTGTRAHRP 125

Query: 59  ASYA 62
              A
Sbjct: 126 GQDA 129



 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 72/202 (35%), Gaps = 25/202 (12%)

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS----------FCALK 244
            + +     +I  L++   +  Q E    +   L   L    D S          F    
Sbjct: 476 EERDERWRALITRLAAWADKARQTERDKPLLSDLRKALKWLKDLSTELRRQRMERFTDAT 535

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG------STGEQKVVLVG 298
           ++  ++L     +D  +  +L+G  ++ +       ++           S GE   + + 
Sbjct: 536 QDIWQRLRQESNVDLAA-VSLMGSEKATVRKLVMAASVDGQDAPALDVMSQGELHSLALS 594

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFD 356
           +FL  A    +  G    L++D+    +D  K + L +++ ++G   Q+ +   D  +  
Sbjct: 595 LFLPRATTADSPFG---FLVIDDPVQSMDPTKVHGLAQVLHELGRHRQVVVFTHDPRLQK 651

Query: 357 SLNE---TAKFMRISNHQALCI 375
           +  +        +++  +   +
Sbjct: 652 AFTDQELPVTVFQVTRGEGSRV 673


>gi|19703785|ref|NP_603347.1| ABC transporter ATP-binding protein [Fusobacterium nucleatum
          subsp. nucleatum ATCC 25586]
 gi|19713927|gb|AAL94646.1| ABC transporter ATP-binding protein [Fusobacterium nucleatum
          subsp. nucleatum ATCC 25586]
          Length = 671

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFD-----AQHTIFVGDNGVGKTNILEAISFLSPG 53
          +++K +N+  FR +  L++ F         T+  GDNG GKT +  AI +   G
Sbjct: 1  MQLKSINLMNFRQFKDLKISFPSSNDGKNVTLIFGDNGSGKTTLANAIIWCLYG 54


>gi|255944429|ref|XP_002562982.1| Pc20g04350 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587717|emb|CAP85764.1| Pc20g04350 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1308

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 10/85 (11%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I+ L ++ F++YA  ++   F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 102 PRMIIENLILTNFKSYAGQQIVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 158

Query: 61  YAD-----VTRIGSPSFFSTFARVE 80
                   +    +      +  VE
Sbjct: 159 MRQGKISALIHNSAQYPNLAYCEVE 183


>gi|209884393|ref|YP_002288250.1| DNA repair protein RecN [Oligotropha carboxidovorans OM5]
 gi|209872589|gb|ACI92385.1| DNA repair protein RecN [Oligotropha carboxidovorans OM5]
          Length = 559

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 75/250 (30%), Gaps = 37/250 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  R+ I+ + +        L + F     +  G+ G GK+ +L+A +    GRG     
Sbjct: 1   MLARLSIRDIVL-----IERLDIDFAKGLAVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61  YADVTRIGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVR-CLQIN 106
            A + R G+     T A             R  G++      + L        R    +N
Sbjct: 51  DASLVRHGAEQGQVTAAFDLPKKHPAFAILRENGLDDPGSGEMILRRVQFADGRTRAFLN 110

Query: 107 DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP-RHRRRMIDFER- 164
           D  + +         +  +    D      +   R+ LD      D       + D  R 
Sbjct: 111 DQPVSIQTLKAIGGTLVEIHGQHDERALVDAATHRQLLDAFAGLEDSVGKVEALWDARRT 170

Query: 165 ---LMRGRNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMI--NALSSLIM 213
               +      +     D+ +      ++ +L         +   R  M+    ++  + 
Sbjct: 171 AREALEEHRAGMERAARDADYLRHASEELMKLAPEEGEETHLASRRTTMMQGEKVAEDLR 230

Query: 214 EYVQKENFPH 223
           E +     P 
Sbjct: 231 EALAAVAGPQ 240


>gi|119493422|ref|XP_001263901.1| DNA repair protein Rad18, putative [Neosartorya fischeri NRRL 181]
 gi|119412061|gb|EAW22004.1| DNA repair protein Rad18, putative [Neosartorya fischeri NRRL 181]
          Length = 1137

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 26/176 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +   R+         VG NG GK+ +L AI+    G+     R  S   
Sbjct: 97  LERVECYNFMCHDHFRVELGPLINFIVGKNGSGKSAVLTAITLCLGGKASATNRGQSLKS 156

Query: 64  VTRIGSPSFFSTFARVEGMEG---------LADISIKLETRDDRSVRCLQINDVVIRV-- 112
             + G  S           +G            I            +    N  +I    
Sbjct: 157 FIKEGKESATIIVRLKNQGDGAFMPDDYGKSIIIERHFSKNGTSGFKIKAENGRIISTKK 216

Query: 113 --VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR 156
             +D +  +  + +  P        +   + +    ++ RF      +  +D  +R
Sbjct: 217 AELDSIIDYFTLQFDNPMNVLSQDMARQFLSTSSPADKYRFFVKGVQLEQLDQDYR 272


>gi|114778619|ref|ZP_01453435.1| chromosome segregation SMC protein, putative [Mariprofundus
           ferrooxydans PV-1]
 gi|114551084|gb|EAU53645.1| chromosome segregation SMC protein, putative [Mariprofundus
           ferrooxydans PV-1]
          Length = 1159

 Score = 52.6 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 26/162 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++K + ++ F+++    R+      T  VG NG GK+NI++A+ ++         R   
Sbjct: 1   MRLKRIELAGFKSFVDPTRIELGEGITAIVGPNGCGKSNIIDALRWVLGEHSARHLRGGV 60

Query: 61  YADVTRIGSP------------SFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND 107
             D+   GS             +F     ++       +  I +  R  R       IN 
Sbjct: 61  MDDLIFQGSDTRPPVSVCDVELTFSVEHGQLAPPYHELE-EISVRRRLMREGGSDAFING 119

Query: 108 VVIRVVDELNKHLRISWLV--------PSMDRIFSGLSMERR 141
            ++R+ D ++  L               S+ R+ +    ERR
Sbjct: 120 KMVRLKDIIDLFLDTGISTRAYAIVEQGSIARMVTARPEERR 161


>gi|329724312|gb|EGG60824.1| chromosome segregation protein SMC [Staphylococcus epidermidis
           VCU144]
          Length = 1189

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 2   VYLKSIDAIGFKSFADHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGAK 61

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             D+   G+       FA V+         +++++ +    R L  +  
Sbjct: 62  MEDIIFSGAEHRKAQNFAEVKLKLDNHSQKLQIDSEELVVTRRLYRSGE 110



 Score = 36.0 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY---AKKLFDG 254
               R   +N   + + E   KE    I   +   ++G+F  +F A+++ +    K+LF G
Sbjct: 997  LNERYTFLNEQRTDLRE--AKETLEQIIHEMDKEVEGRFKTTFHAVQDHFTTVFKQLFGG 1054

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
             + +             D+IV    K +  ++  S GE+ +  + +  A  ++       
Sbjct: 1055 GQAELRLTEDDYLSAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKV-----RS 1109

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDIG--SQIFM 347
            AP ++LDE+ A LDE       + + ++   +Q  +
Sbjct: 1110 APFVILDEVEAALDEANVIRYAQYLNELSTETQFIV 1145


>gi|329120398|ref|ZP_08249065.1| hypothetical protein HMPREF9123_2496 [Neisseria bacilliformis
          ATCC BAA-1200]
 gi|327462353|gb|EGF08679.1| hypothetical protein HMPREF9123_2496 [Neisseria bacilliformis
          ATCC BAA-1200]
          Length = 680

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVF----DAQHTIFVGD-NGVGKTNILEAISFL 50
          + I  + +  F++Y +++  F    D ++ I +G  NG GKT +LEA+   
Sbjct: 1  MWIHSIRLRNFKSYDNVQFTFPEPKDGRNIILIGAQNGHGKTTLLEAVYLC 51



 Score = 36.0 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 27/205 (13%)

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIKLS 227
           R L     +    +    ++     + +  R      +  L   I       + P +   
Sbjct: 457 RQLKTANTEIDKLAEETGRLKSNVSQQSRTRDRHKDEVARLQDNISH-----SNPRL--- 508

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAH 286
           +     G  D++   L EE  K+   G   ++ +R      H   +  +   +       
Sbjct: 509 VKSQRAGNVDKTITRLTEELMKQ-KVGEVSEAATRINRSIAHDERIHKIRIENNGGMTLF 567

Query: 287 G----------STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
           G          S G+ +++++ +  A    ++  T +    ++D   A LD   R  LFR
Sbjct: 568 GRDGCESRVDLSAGQMQILIMSLVSA----LAEVTRYHAPFIIDTPLARLDAGHREGLFR 623

Query: 337 IVTDIGSQIFMTGTDKSVFDSLNET 361
             + +  Q+ +   D  +   ++  
Sbjct: 624 HWSSLPQQVILLSQDTEITPEVSRR 648


>gi|303389909|ref|XP_003073186.1| chromosome segregation ATPase [Encephalitozoon intestinalis ATCC
           50506]
 gi|303302331|gb|ADM11826.1| chromosome segregation ATPase [Encephalitozoon intestinalis ATCC
           50506]
          Length = 1146

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 9/111 (8%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
            ++++ + I  F++Y    +    D + T  VG NG GK+NI+++I F+   R    R +
Sbjct: 43  NLRLESITIHNFKSYKGTHVIQGLDPRFTAVVGANGSGKSNIIDSILFVLGFRARRMRHS 102

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           S A +   G  +    +  +    G     I+ E       R   ++   +
Sbjct: 103 SMAGLIYSGDGNQDMCYVEL----GFNKFQIRREVSLAGRTRYF-VDGEEV 148


>gi|209946242|gb|ACI97352.1| SMC1 [Drosophila melanogaster]
          Length = 306

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|169850873|ref|XP_001832128.1| cohesin complex subunit psm1 [Coprinopsis cinerea okayama7#130]
 gi|116506788|gb|EAU89683.1| cohesin complex subunit psm1 [Coprinopsis cinerea okayama7#130]
          Length = 1243

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          + +  + + +F++Y     +   +  T  +G NG GK+N+++AISF+   +    R A  
Sbjct: 1  MPLIRIEVCDFKSYRGHQVIGPFSNFTSVIGPNGAGKSNLMDAISFVLGVKSAQLRSAQL 60

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 61 KDLVYRG 67


>gi|57866685|ref|YP_188383.1| chromosome segregation SMC protein [Staphylococcus epidermidis
           RP62A]
 gi|242242517|ref|ZP_04796962.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus epidermidis W23144]
 gi|57637343|gb|AAW54131.1| chromosome segregation SMC protein, putative [Staphylococcus
           epidermidis RP62A]
 gi|242234025|gb|EES36337.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus epidermidis W23144]
          Length = 1189

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 2   VYLKSIDAIGFKSFADHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGAK 61

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             D+   G+       FA V+         +++++ +    R L  +  
Sbjct: 62  MEDIIFSGAEHRKAQNFAEVKLKLDNHSQKLQIDSEELVVTRRLYRSGE 110



 Score = 36.0 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY---AKKLFDG 254
               R   +N   + + E   KE    I   +   ++G+F  +F A+++ +    K+LF G
Sbjct: 997  LNERYTFLNEQRTDLRE--AKETLEQIIHEMDKEVEGRFKTTFHAVQDHFTTVFKQLFGG 1054

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
             + +             D+IV    K +  ++  S GE+ +  + +  A  ++       
Sbjct: 1055 GQAELRLTEDDYLSAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKV-----RS 1109

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDIG--SQIFM 347
            AP ++LDE+ A LDE       + + ++   +Q  +
Sbjct: 1110 APFVILDEVEAALDEANVIRYAQYLNELSTETQFIV 1145


>gi|319401474|gb|EFV89684.1| chromosome segregation protein SMC [Staphylococcus epidermidis
           FRI909]
          Length = 1189

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 2   VYLKSIDAIGFKSFADHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGAK 61

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             D+   G+       FA V+         +++++ +    R L  +  
Sbjct: 62  MEDIIFSGAEHRKAQNFAEVKLKLDNHSQKLQIDSEELVVTRRLYRSGE 110



 Score = 36.0 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY---AKKLFDG 254
               R   +N   + + E   KE    I   +   ++G+F  +F A+++ +    K+LF G
Sbjct: 997  LNERYTFLNEQRTDLRE--AKETLEQIIHEMDKEVEGRFKTTFHAVQDHFTTVFKQLFGG 1054

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
             + +             D+IV    K +  ++  S GE+ +  + +  A  ++       
Sbjct: 1055 GQAELRLTEDDYLSAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKV-----RS 1109

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDIG--SQIFM 347
            AP ++LDE+ A LDE       + + ++   +Q  +
Sbjct: 1110 APFVILDEVEAALDEANVIRYAQYLNELSTETQFIV 1145


>gi|310823283|ref|YP_003955641.1| DNA repair protein RecN [Stigmatella aurantiaca DW4/3-1]
 gi|309396355|gb|ADO73814.1| DNA repair protein RecN [Stigmatella aurantiaca DW4/3-1]
          Length = 580

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 91/296 (30%), Gaps = 42/296 (14%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L IS       + + F A  T+  G+ G GK+ +++A+  L  GR     + ADV R G 
Sbjct: 5   LRISNVAVIEEVEVGFGAGLTVLTGETGAGKSILVDALGLLLGGR-----ADADVIRAGC 59

Query: 70  PSFFS---------TFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
                           +R+E  G+  L D  +              +N  ++  V  L +
Sbjct: 60  DEASVEGVYACTPALASRLEDLGLPNLGDEVLVRRVVGRNGRGKAYVNGSLV-TVGVLAR 118

Query: 119 HLR-ISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERL---------- 165
             R +  +    + +    +   R  LDR   +      + +    F  +          
Sbjct: 119 LTRGLVDIAGQHEHVSLFDASLHRALLDRYGHLGEALATYGQHYAAFREVEARMESLGGD 178

Query: 166 ---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY------V 216
              +R R   L     +    +    +  +L V+    R+     L     E        
Sbjct: 179 EGRVRERAEFLRFQRDEIDRLNPEPGEDVKLDVE--RRRLAGAEKLKRQAAEAEVLVAGD 236

Query: 217 QKENFPHIKLSLTGFLDG-KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           +      +  +L    D  ++D +   + +     L +  +      R   G    
Sbjct: 237 ESSALETVGRALGLINDAVRYDTTLGPIVQSLGAALAELEEAQRRLNRYADGLESD 292


>gi|297565754|ref|YP_003684726.1| DNA repair protein RecN [Meiothermus silvanus DSM 9946]
 gi|296850203|gb|ADH63218.1| DNA repair protein RecN [Meiothermus silvanus DSM 9946]
          Length = 529

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 80/244 (32%), Gaps = 19/244 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +        + L F    T+  G+ G GK+ +++A+S L   R         + R
Sbjct: 2   LERLEVKNLAVLEEVTLEFGPGLTVLTGETGAGKSVLVDALSLLLGER------AEGMIR 55

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+ +   T A  +G             R   S    +++  V+ + +   +  +   + 
Sbjct: 56  QGAEALLVT-AWFDGRV--------FSRRVTNSRSIPRVDGEVVSLRELAEETSQHLTIH 106

Query: 127 PSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
                +       +R  LD +V  A+   +R      + L+  + RL             
Sbjct: 107 AQHAALTLLGRKAQRALLDALVDPALLQAYREAYTHHQTLLAEQERLEAAARERERRLDV 166

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +  Q+ E+     +   E    L     +    E+    ++ L   L      S   + +
Sbjct: 167 LSFQIKEIDAAKIVPGEE--TELKREAEKLRHAESL-RERVGLASSLLSGEHDSVGQIAQ 223

Query: 246 EYAK 249
              +
Sbjct: 224 ALKE 227


>gi|295657203|ref|XP_002789173.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226284517|gb|EEH40083.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1136

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 26/176 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL AI+    G+     R  S   
Sbjct: 119 IERVDCYNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTAITLCLGGKASVTNRGQSLKS 178

Query: 64  VTRIGSPSFFSTFARVEGMEGLAD---------ISIKLETRDDRSVRCLQINDVVIRV-- 112
             + G  S           +   +         I            +    N  V+    
Sbjct: 179 FIKEGKDSATIVVRIKNNGDSAYNPNEFGDSIIIERHFSRTGASGFKIKSSNGRVVSTKK 238

Query: 113 --VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR 156
             +D +  +  +    P        +   + +    E+ +F      +  +D  +R
Sbjct: 239 SELDSITDYYALQIDNPMNVLSQDMARQFLSNSSPSEKYKFFLKGVQLEQLDQDYR 294


>gi|188533875|ref|YP_001907672.1| hypothetical protein ETA_17370 [Erwinia tasmaniensis Et1/99]
 gi|188028917|emb|CAO96783.1| Hypothetical protein ETA_17370 [Erwinia tasmaniensis Et1/99]
          Length = 814

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 3   NRIKIKFLNISEFRNYAS-LRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA- 59
           N  +I  + ++ F++++  L L F D Q  I  G NG GKT I +AI     G+  R   
Sbjct: 11  NNFRIGRIRLTNFKSFSEPLELNFGDHQLIILDGPNGFGKTTIFDAIEISMTGKLLRVRD 70

Query: 60  -----SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
                    +      S+   +  +    G   + I     D R  
Sbjct: 71  SDGKVKDKHLLINNLSSYAEIYLELLDFSGAGHLVIHTHICDYRGA 116


>gi|27467827|ref|NP_764464.1| chromosome segregation SMC protein [Staphylococcus epidermidis ATCC
           12228]
 gi|251810664|ref|ZP_04825137.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876334|ref|ZP_06285201.1| chromosome segregation protein SMC [Staphylococcus epidermidis
           SK135]
 gi|27315372|gb|AAO04506.1|AE016747_3 chromosome segregation SMC protein [Staphylococcus epidermidis ATCC
           12228]
 gi|251805824|gb|EES58481.1| SMC superfamily ATP-binding chromosome segregation protein
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295359|gb|EFA87886.1| chromosome segregation protein SMC [Staphylococcus epidermidis
           SK135]
 gi|329736298|gb|EGG72570.1| chromosome segregation protein SMC [Staphylococcus epidermidis
           VCU028]
          Length = 1189

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 2   VYLKSIDAIGFKSFADHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGAK 61

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             D+   G+       FA V+         +++++ +    R L  +  
Sbjct: 62  MEDIIFSGAEHRKAQNFAEVKLKLDNHSQKLQIDSEELVVTRRLYRSGE 110



 Score = 36.0 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 13/156 (8%)

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY---AKKLFDG 254
               R   +N   + + E   KE    I   +   ++G+F  +F A+++ +    K+LF G
Sbjct: 997  LNERYTFLNEQRTDLRE--AKETLEQIIHEMDKEVEGRFKTTFHAVQDHFTTVFKQLFGG 1054

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
             + +             D+IV    K +  ++  S GE+ +  + +  A  ++       
Sbjct: 1055 GQAELRLTEDDYLSAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKV-----RS 1109

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDIG--SQIFM 347
            AP ++LDE+ A LDE       + + ++   +Q  +
Sbjct: 1110 APFVILDEVEAALDEANVIRYAQYLNELSTETQFIV 1145


>gi|324501951|gb|ADY40863.1| Structural maintenance of chromosomes protein 2 [Ascaris suum]
          Length = 1200

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          ++IK + I  F++YA  ++V  FDAQ     G NG GK+NIL+AI F   ++     R  
Sbjct: 1  MRIKKIEIDGFKSYAQRQVVDGFDAQFNAITGLNGSGKSNILDAICFVLGITNLNQVRAV 60

Query: 60 SYADVT-RIGSPSFFSTFARV 79
            +D+  + G          +
Sbjct: 61 QLSDLVYKQGQAGVTKATVTI 81


>gi|332653023|ref|ZP_08418768.1| DNA repair protein RecN [Ruminococcaceae bacterium D16]
 gi|332518169|gb|EGJ47772.1| DNA repair protein RecN [Ruminococcaceae bacterium D16]
          Length = 564

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 103/286 (36%), Gaps = 44/286 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + + I+ + +       S  + F+  + +  G+ G GK+ ++++I  +    G R + 
Sbjct: 1   MLSLLHIENIAL-----IQSADIRFEPGYNVLTGETGAGKSIVIDSIGAVL---GERTS- 51

Query: 61  YADVTRIGSPSFFSTFARV---------EGMEGLADISIKLETRDDRSVRCL-QIND--V 108
             ++ R G+ S   T             E    L D  + L+       R + +++   V
Sbjct: 52  -RELIRTGAKSALVTAVFTQVPPLPWLEENGIALQDGEVLLQREIQGDGRNVCRVDGRLV 110

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLM 166
            +  + EL + L          ++          +LDR     +    +R     +  L 
Sbjct: 111 TVAQLRELGRQLLNIHGQHDGQQLL--DPASHLGYLDRCGGHTELLENYRTAYQTWNGLR 168

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARV------EMINALSSL 211
           +    L  +    S    ++  Q+ EL           +++  R       ++++AL S 
Sbjct: 169 KQIAALEMDEAERSRRVDTLNFQIRELERAQLRAGEDEELDQRRTLLRSAGKLMDALQSA 228

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQS--FCALKEEYAKKLFDGR 255
                  +    +  SL    +G+ D    F A  EE A+++ + R
Sbjct: 229 EYALCGDDEGGGV-CSLLADAEGELDSVSQFSAALEELARQVSELR 273


>gi|306825097|ref|ZP_07458439.1| DNA repair protein RecN [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432533|gb|EFM35507.1| DNA repair protein RecN [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 555

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNLMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RSV  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQELFEEQGLEMGDEIIIRREILQNGRSVSRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL    +    D+               F D     +   ++     + ++ + 
Sbjct: 117 LRAIGQHL--VDIHGQHDQEELMRPQLHIQMLDEFGDATFLDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
              +        +    +E QMAE+      A
Sbjct: 175 VLEVKKNQQEHKARIEMLEFQMAEIEAANLQA 206


>gi|238892776|ref|YP_002917510.1| putative exonuclease [Klebsiella pneumoniae NTUH-K2044]
 gi|238545092|dbj|BAH61443.1| putative exonuclease [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 343

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 106/329 (32%), Gaps = 51/329 (15%)

Query: 5   IKIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRAS 60
           +++K + IS F++ ++     +  + + T F+G NG GK+  +EA++   S     R  S
Sbjct: 1   MQLKKIFISGFKSISNQNPQTIDLEHELTTFIGHNGTGKSTAMEALNKLFSVDNSLRSLS 60

Query: 61  YADVTRIGSPSF----------FSTFARVEGMEGLADI-----SIKLETRDDRSVRCLQI 105
             D     +              + F+  +  EG   I      + ++  D   +  +++
Sbjct: 61  INDF--HNADDGKDEKTRSLIIETWFSFPKPKEGKISIPPLIEHLTIDKSDGNILFRVRL 118

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFE 163
              +    + +       W+V + D +    S ++     R    +   P +R  ++  +
Sbjct: 119 EGKLSFEANPMGDIDEDIWVVSTSDEVVEESSKQKLSAAVRNAIQVSYVPANRDPLLQLK 178

Query: 164 RLMRG-RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
              +    RLL    +       +E Q A+L           +   +  + E     N  
Sbjct: 179 YSSKAVLGRLLKAIEWVGGSQEVLEEQAAKLNA---------LTKSNPALNEIAAAINAS 229

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
              +    +L         A  +E  K +      D                       I
Sbjct: 230 WGNIYKGRYLSQASLNFPLANIDEILKLIQLQFNPDE------------------TGNTI 271

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTT 311
            +   S G++ +V   +  A   +   T 
Sbjct: 272 NVDRLSDGQKSLVYFSLIKAMFDIDKKTR 300


>gi|156933790|ref|YP_001437706.1| hypothetical protein ESA_01616 [Cronobacter sakazakii ATCC
          BAA-894]
 gi|156532044|gb|ABU76870.1| hypothetical protein ESA_01616 [Cronobacter sakazakii ATCC
          BAA-894]
          Length = 369

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          IKFL+I  F+    + L    +  I  G NG GKT+IL+AI  
Sbjct: 2  IKFLHIKNFKGLDDIELHNLKKVNIIAGKNGRGKTSILDAIFI 44


>gi|320034927|gb|EFW16870.1| DNA repair protein Rad18 [Coccidioides posadasii str. Silveira]
          Length = 1126

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 28/177 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +  L +         VG NG GK+ +L A++    G+     R  S   
Sbjct: 86  IERVDCYNFMCHEHLSMELGPLINFIVGKNGSGKSAVLSALTICLGGKASATNRGQSLRK 145

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI------SIKLETRDDRSVRC-LQINDVVIRVVD-- 114
             + G  S  +   R++     A +      SI +E    +S     +I +   RVV   
Sbjct: 146 FIKEGKESA-TIVVRIKNQGDSAYLPNEFGRSITIERHFSKSGTSGFRIKNASGRVVSTK 204

Query: 115 -----------ELNKHLRISWLVPSMDR--IFSGLSMERRRFL--DRMVFAIDPRHR 156
                       L     ++ L   M R  + S    E+ RF      +  +D  + 
Sbjct: 205 RSDLDSITDYFALQIDNPMNVLTQDMARQFLSSSSPAEKYRFFVKGVQLEQLDQDYH 261


>gi|315658481|ref|ZP_07911353.1| SMC family domain protein [Staphylococcus lugdunensis M23590]
 gi|315496810|gb|EFU85133.1| SMC family domain protein [Staphylococcus lugdunensis M23590]
          Length = 1189

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K ++   F+++     + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2  VYLKSIDAIGFKSFAEHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61 YADVTRIGSPS 71
            D+   G+  
Sbjct: 62 MEDIIFSGAEH 72


>gi|303232198|ref|ZP_07318901.1| DNA repair protein RecN [Veillonella atypica ACS-049-V-Sch6]
 gi|302513304|gb|EFL55343.1| DNA repair protein RecN [Veillonella atypica ACS-049-V-Sch6]
          Length = 554

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 87/250 (34%), Gaps = 39/250 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ I+   +        + + F    TIF G+ G GK+ +++A S L    G R +S
Sbjct: 1   MLTQMCIRNFAL-----IEQMNISFKDGITIFTGETGAGKSILMDAFSILL---GERASS 52

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADI-----------SIKLETRDDRSVRCLQI-ND 107
             +  R G  SF       +   + L D+            + L    + S + + + ND
Sbjct: 53  --EFIRHGKDSFVIDGIFDIANHQSLLDLLQSKNILVEDNQLILSRSFNTSGKSIILAND 110

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
             I  + + E+   L       S  ++ +        +LD    A    ++     ++  
Sbjct: 111 QPIPLKALKEIGLLLADIHGQYSNQKLLN--PDSHHEYLDGYNQAGSKAYKEYKAAYKEY 168

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
              +               ++   MAE   ++++ R + I+ +    ++  + E+     
Sbjct: 169 KEAKQA-----------LDNLSEHMAERARELDMLRFQ-IDEIEEAGLQIGEDESIAEEL 216

Query: 226 LSLTGFLDGK 235
             L  F    
Sbjct: 217 KRLDSFDHID 226


>gi|302496502|ref|XP_003010252.1| DNA repair protein Rad18, putative [Arthroderma benhamiae CBS
           112371]
 gi|291173794|gb|EFE29612.1| DNA repair protein Rad18, putative [Arthroderma benhamiae CBS
           112371]
          Length = 1062

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 92/308 (29%), Gaps = 65/308 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++    G+     R  S   
Sbjct: 93  IERVDCYNFMCHEHFSVELGPLINFIVGKNGSGKSAILTALTLCLGGKASATNRGQSLKS 152

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-----INDVVIRVVDELNK 118
             + G        A +    G + I  +  TR   S   L+     I       +D +  
Sbjct: 153 FVKEGKEG---DGAYLPDTYGESIIVERHFTRSGSSGFRLKSKSGTIISTRRADLDYITD 209

Query: 119 HLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHRRR---------- 158
           +  +    P        +   + +    E+ +F      +  +D  +             
Sbjct: 210 YFALQMDNPMNVLSQDMARQFLSTSSPAEKYKFFMKGVQLEQLDHDYHMMEESIDQLQVK 269

Query: 159 MIDFERLMR----GRN----------------RLLTEGYFDSSWCSSIEAQ--------M 190
           + D +  ++     RN                  +      ++W    E +        +
Sbjct: 270 LHDHQEQLKVLESNRNNARARLAQSDRHESLRARIRHLRSQTAWIQVEEQERPQIRDSLV 329

Query: 191 AELGVKINIARVEMINALSSL----IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           AE+      AR+E + + +           Q+ N     + +        D S   +K+ 
Sbjct: 330 AEIAE--TRARIEQLESEAENRDAEFQAADQEVNEAREAVRVAKEAQAAIDDSKAEIKQR 387

Query: 247 YAKKLFDG 254
           Y + + + 
Sbjct: 388 YDEAVKER 395


>gi|209946244|gb|ACI97353.1| SMC1 [Drosophila melanogaster]
          Length = 306

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|209946220|gb|ACI97341.1| SMC1 [Drosophila melanogaster]
 gi|209946246|gb|ACI97354.1| SMC1 [Drosophila melanogaster]
          Length = 306

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|294658874|ref|XP_002770854.1| DEHA2F20020p [Debaryomyces hansenii CBS767]
 gi|202953454|emb|CAR66374.1| DEHA2F20020p [Debaryomyces hansenii]
          Length = 1240

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 74/217 (34%), Gaps = 30/217 (13%)

Query: 6   KIKFLNISEFRNYASLR-LVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           ++  L +  F++Y     + F     T  +G NG GK+N+++AISF+   +    R  + 
Sbjct: 3   RLVGLELENFKSYRGTSCIGFGTSFFTSIIGPNGAGKSNMMDAISFVLGVKSSHLRSHNL 62

Query: 62  ADVTRIG-------------SPSFFSTFARVEGMEGLADISIKLETRD--DRSVRCLQIN 106
            D+   G               S   T A V  +    +  I    R          +IN
Sbjct: 63  KDLIYRGRRTNVNALDSTLEEISPDPTKAHVMAIYEKDNGEILNLKRIITSSGSSEYKIN 122

Query: 107 DVVIRVVDE---------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRH 155
           D  +  +           L K          +++I S    +  + ++ +  A +    +
Sbjct: 123 DKSVTALQYSMVLKNENILIKARNFLVFQGDVEQIASQSPKDLTKLIETISGANEYQQEY 182

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
                + E+     N + +     +S     + Q+ E
Sbjct: 183 ETLRDESEKAHESSNVVFSRKRTLNSESKQYKEQLIE 219


>gi|296126519|ref|YP_003633771.1| SMC domain protein [Brachyspira murdochii DSM 12563]
 gi|296018335|gb|ADG71572.1| SMC domain protein [Brachyspira murdochii DSM 12563]
          Length = 952

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEA 46
          + IK LN+  F+++A    + F+   T+ +G NG+GK+NI+EA
Sbjct: 1  MYIKNLNLHGFKSFAIETNIEFNEGVTVVLGPNGIGKSNIVEA 43


>gi|302878123|ref|YP_003846687.1| SMC domain-containing protein [Gallionella capsiferriformans ES-2]
 gi|302580912|gb|ADL54923.1| SMC domain protein [Gallionella capsiferriformans ES-2]
          Length = 394

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/374 (16%), Positives = 119/374 (31%), Gaps = 64/374 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + I  F++  SL L    +   F+G NGVGK+ IL+AI F+S           +V  
Sbjct: 2   IEKIFIRNFKSAGSLTLPLS-KFNCFIGMNGVGKSTILQAIDFISQLM------TGNVQN 54

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI---NDVVIRVVDELNKHLRIS 123
                 ++       +   ++I I +E R       +     N   +R   E  K     
Sbjct: 55  WLISRGWTVQELNCKLLKDSNILISVEYRTQAGQLLIWYAGFNRYDLRCSWERIKLDEDV 114

Query: 124 WLVPSMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
             +       +    +   F     ++  +       +     ++  RN L         
Sbjct: 115 IFISRGHEYQTEGRKQPISFTFQGSILSQLKDSELPSI-----ILEFRNAL--------- 160

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL---SLTGFLD---GK 235
                              R+  +  LS  ++    +     I      L+G+L    G 
Sbjct: 161 ------------------RRIRSLELLSPHLLRKRARTEDKDIGAGGEKLSGYLHNIKGD 202

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
             +   AL + +   L D R     +  + L+   +               H S G  ++
Sbjct: 203 AKEHLLALLKMFYPDLIDFRVASLRAGWKKLMVVEQ----FGEHKLETEATHLSDGLLRI 258

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           + V   LA A          P+++LDEI   ++ +    L   +     QI +T     +
Sbjct: 259 LAV---LAQAE------SDHPLIMLDEIENGINPEIIEKLVDTLVKSPQQIIVTTHSPMI 309

Query: 355 FDSLNETAKFMRIS 368
            + L +      + 
Sbjct: 310 LNYLEDDVARKSVQ 323


>gi|242240485|ref|YP_002988666.1| ATPase [Dickeya dadantii Ech703]
 gi|242132542|gb|ACS86844.1| ATPase [Dickeya dadantii Ech703]
          Length = 388

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L+I+ +R+   L L   +   I  G+NG GK+N+ +A+  L+
Sbjct: 2  LTSLSIANYRSIRDLTLPLGS-LNIITGENGSGKSNLYKALRLLA 45


>gi|218438584|ref|YP_002376913.1| ATPase [Cyanothece sp. PCC 7424]
 gi|218171312|gb|ACK70045.1| ATPase [Cyanothece sp. PCC 7424]
          Length = 368

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 68/414 (16%), Positives = 135/414 (32%), Gaps = 89/414 (21%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHT-------IFVGDNGVGKTNILEAISF-LSPGRGF 56
           +K++ ++I  F+ + +L + F  +         + +GDNG GKT +L+AI+  L+     
Sbjct: 1   MKVESISIQNFKRFDNLEVSFKNKTLNEVSDRFLILGDNGSGKTTLLQAIALPLALA--- 57

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                  V       F        G     ++ +  E  +  + R     +V  +  D  
Sbjct: 58  -TGQIQSVFNFDWIGFLPGRYSRWGSAPRIELEVSFEDEELEATR-----EVAQKWYDAQ 111

Query: 117 NKHLRISWLVPSMDRIFS-----------GLSMERRRFLDRMVFA---IDPRHRRRMIDF 162
            +  +  ++VP    +                 ER +F  R        +         F
Sbjct: 112 PEEFQNDFIVPGKSPVVRVILNGENWKAGETQAERLQFRGRSYAQWLVRNSDF-SARSYF 170

Query: 163 ERL-----MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
            +L                 F+ +   +++    E    I+  R   + +L   ++E+ +
Sbjct: 171 AKLPGIFWFDQ----FRNLGFNYNQDGTVDGT-KEHNSGISYERG--VGSLRKYLIEWRR 223

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR---------KMDSMSRRTLIGP 268
           K+                +   +    E+Y KK+F  R          +DS +  T    
Sbjct: 224 KQEGGK-----------NYQNDYLEQLEKYYKKVFPDRSFWGLENRPSLDSPTEETTYFL 272

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLV-----GIFLAHARLISNTTGFAPILLLDEIS 323
            + D      ++   I   S GEQ V  +      + +A             ++L+DEI 
Sbjct: 273 IKDD-----GNRRYDIEEMSAGEQSVFPILYEFVTLKIA-----------YSVVLIDEID 316

Query: 324 AHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
            +L       L   +  I    Q  +T T      ++   +   R+     LC+
Sbjct: 317 LNLHPPAAQILVSQLLTIAPTCQFIIT-THSESVSNVIGESDTYRLPGG-ILCL 368


>gi|331266232|ref|YP_004325862.1| DNA repair protein RecN [Streptococcus oralis Uo5]
 gi|326682904|emb|CBZ00521.1| DNA repair protein RecN [Streptococcus oralis Uo5]
          Length = 555

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 77/208 (37%), Gaps = 25/208 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNLMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RSV  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQELFEEQGLEMGDEIIIRREILQNGRSVSRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL    +    D+               F D     +   ++     + ++ + 
Sbjct: 117 LRAIGQHL--VDIHGQHDQEELMRPQLHIQMLDEFGDAAFLDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVK 196
              +        +    +E QMAE+   
Sbjct: 175 VLEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|320094121|ref|ZP_08025934.1| hypothetical protein HMPREF9005_0546 [Actinomyces sp. oral taxon
          178 str. F0338]
 gi|319978923|gb|EFW10453.1| hypothetical protein HMPREF9005_0546 [Actinomyces sp. oral taxon
          178 str. F0338]
          Length = 456

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          +    +S F+N  ++ + F    T   G N VGK+N+ +AI FLS     
Sbjct: 2  LTRFEVSGFKNLENVSVDFGP-FTCIAGPNSVGKSNLFDAIEFLSLLSDH 50


>gi|303310495|ref|XP_003065259.1| hypothetical protein CPC735_044840 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240104921|gb|EER23114.1| hypothetical protein CPC735_044840 [Coccidioides posadasii C735
           delta SOWgp]
          Length = 1126

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 28/177 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +  L +         VG NG GK+ +L A++    G+     R  S   
Sbjct: 86  IERVDCYNFMCHEHLSMELGPLINFIVGKNGSGKSAVLSALTICLGGKASATNRGQSLRK 145

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI------SIKLETRDDRSVRC-LQINDVVIRVVD-- 114
             + G  S  +   R++     A +      SI +E    +S     +I +   RVV   
Sbjct: 146 FIKEGKESA-TIVVRIKNQGDSAYLPNEFGRSITIERHFSKSGTSGFRIKNASGRVVSTK 204

Query: 115 -----------ELNKHLRISWLVPSMDR--IFSGLSMERRRFL--DRMVFAIDPRHR 156
                       L     ++ L   M R  + S    E+ RF      +  +D  + 
Sbjct: 205 RSDLDSITDYFALQIDNPMNVLTQDMARQFLSSSSPAEKYRFFVKGVQLEQLDQDYH 261


>gi|303274994|ref|XP_003056807.1| condensin complex component [Micromonas pusilla CCMP1545]
 gi|226461159|gb|EEH58452.1| condensin complex component [Micromonas pusilla CCMP1545]
          Length = 1262

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 2/105 (1%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYA 62
           + IK + +  F+ Y    +  F+      VG NG GK+N+  AI   LS      RA   
Sbjct: 1   MHIKQVVVEGFKTYREQTVVEFEPHLNCIVGANGSGKSNLFHAIRFVLSDIFSNLRADER 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                         A  E +   +D  + ++  + R  R + +  
Sbjct: 61  QKLLHEGAGHAVMSAYAEIVFDNSDNRLPVDREEVRLRRSIGLKK 105


>gi|257059860|ref|YP_003137748.1| DNA repair protein RecN [Cyanothece sp. PCC 8802]
 gi|256590026|gb|ACV00913.1| DNA repair protein RecN [Cyanothece sp. PCC 8802]
          Length = 586

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 85/266 (31%), Gaps = 34/266 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L L F     +  G+ G GK+ IL+AI  +  G+         + R
Sbjct: 2   LSLLQIKNFTLVDQLTLQFGQGLNVLTGETGAGKSIILDAIDTVLGGK-----VNNRLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD--ISIKLETRDDRSV---RCLQINDVVIRVVDELNKHL- 120
            G     S  A  +G   L +     ++E  DD ++   R L +    +R    +N  + 
Sbjct: 57  QGMQQA-SLEATFQGDTTLNEWLHQQEIEPLDDGTIVCYRELILTGETLRSRSRINGVMV 115

Query: 121 ----------RISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDPR--HRRRMIDFE 163
                     R+  +      +    S  +R  LD      ++   D            E
Sbjct: 116 NLQVMGQLRDRLVEITAQGQTVQLMDSTRQRELLDLYGGTTLLKQRDRVEIAYENWKLVE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + +  R +   +          ++ Q+ EL         E +  L           +   
Sbjct: 176 KALEKRRQSEKDR---LQRLDLLDYQLKELSEAELTDPDE-VEHLEQERDRLSHVVDLQQ 231

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAK 249
           +    T  L  + D    A+ ++ A+
Sbjct: 232 LSYQ-TYQLLYQNDSGEPAIADQLAE 256


>gi|189499472|ref|YP_001958942.1| chromosome segregation protein SMC [Chlorobium phaeobacteroides
          BS1]
 gi|189494913|gb|ACE03461.1| chromosome segregation protein SMC [Chlorobium phaeobacteroides
          BS1]
          Length = 1185

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
          + +  + +  F+++A  +++ FD   T  VG NG GKTN+++AI   L   +    R + 
Sbjct: 1  MYLSKIELFGFKSFAHKVKITFDKGLTAIVGPNGCGKTNVVDAIRWVLGEQKTSLLRSSK 60

Query: 61 YADVTRIGS 69
             +   GS
Sbjct: 61 MESIIFNGS 69



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 68/189 (35%), Gaps = 28/189 (14%)

Query: 169  RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
            RNR+   G  +       E +           R++ +      ++    +      +++ 
Sbjct: 970  RNRIERFGAVNELALEEYETE---------QERLDFLTEQKEDLIGAETQLRTTIEEINK 1020

Query: 229  TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD--------K 280
            T     KFD++F A++  + +   +    +      L+     D +  + +        K
Sbjct: 1021 TAL--KKFDETFNAVRSNFVRIFRELF--EETDEADLLITSEEDPLEAHIEIVAKPRGKK 1076

Query: 281  AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
             ++I   S GE+ +  + +  +   +       +P  +LDE+ A LD+       +++  
Sbjct: 1077 PLSIEQLSGGEKALTALALLFSIYLV-----KPSPFCILDEVDAPLDDANIERFIKLLKK 1131

Query: 341  I--GSQIFM 347
                +Q  +
Sbjct: 1132 FENNTQFII 1140


>gi|300870602|ref|YP_003785473.1| chromosome partition protein SmC [Brachyspira pilosicoli 95/1000]
 gi|300688301|gb|ADK30972.1| chromosome partition protein SmC, putative [Brachyspira
          pilosicoli 95/1000]
          Length = 952

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEA 46
          + IK LN+  F+++A    + F+   T+ +G NG+GK+NI+EA
Sbjct: 1  MYIKNLNLHGFKSFAIETNIEFNEGVTVVLGPNGIGKSNIVEA 43


>gi|289550986|ref|YP_003471890.1| Chromosome partition protein smc [Staphylococcus lugdunensis
          HKU09-01]
 gi|289180518|gb|ADC87763.1| Chromosome partition protein smc [Staphylococcus lugdunensis
          HKU09-01]
          Length = 1189

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K ++   F+++     + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2  VYLKSIDAIGFKSFAEHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61 YADVTRIGSPS 71
            D+   G+  
Sbjct: 62 MEDIIFSGAEH 72


>gi|10697129|emb|CAC12695.1| putative structural maintenance of chromosome 3 protein
          [Trypanosoma brucei]
          Length = 1260

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + IS FR+Y           ++ + VG NG GK+N   AI F
Sbjct: 1  MYIKNILISGFRSYREQAFEQELSPKNNVIVGKNGAGKSNFFAAIQF 47



 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 272  DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
             +          +   S G++ +V + +  A           AP  L DEI A LD + R
Sbjct: 1073 KVSFGLGAAVTDLKQLSGGQKSLVTLALIFA-----IQRCDPAPFYLFDEIDAALDTEYR 1127

Query: 332  NALFRIVTDI--GSQIFMTGT 350
             ++ ++++      Q F+T T
Sbjct: 1128 ASVAKLLSKESGSCQ-FITAT 1147


>gi|81294371|gb|AAI08195.1| SMC1B protein [Bos taurus]
          Length = 174

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 16/155 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
           +++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3   RLEVLFVENFKSWRGRQVIGPFKRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQ 62

Query: 63  DVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKH 119
           ++   G+      S+ A V+ +        K   R  R        ND  +     + + 
Sbjct: 63  ELI-HGAHIGKPVSSSASVKIVYLEESGEEKTFARTIRGGCSEYSFNDNPMSRSAYITEL 121

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
            +I  +V + + +               ER +F +
Sbjct: 122 EKIGIIVKARNCLVFQGTVESISMKKPKERTQFFE 156


>gi|77918977|ref|YP_356792.1| DNA repair ATPase [Pelobacter carbinolicus DSM 2380]
 gi|77545060|gb|ABA88622.1| ATPase involved in DNA repair [Pelobacter carbinolicus DSM 2380]
          Length = 814

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ +++   +++    L F A   +  G NGVGK+ + EAI +   G
Sbjct: 4  IETIHLKNIKSHRDTTLSFSAGINVLSGPNGVGKSTVFEAIGYALFG 50



 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 23/195 (11%)

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
              +R  + + + + E          +E     L   I       +  L  LI E ++++
Sbjct: 598 SQHQRTRQQKEQRVGEIAGLQQRIKGLEKDDERLTADITR-----LKQLQKLIAERLEQK 652

Query: 220 NFPHIKLSLTGFLDGK-FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG----PHRSDLI 274
                +  L  +L  + F      L E + +++   ++ D + R    G        +  
Sbjct: 653 KHYEEQEQLVKYLRNRVFRNVSNRLSERFREEI--SQRADRIYRTIAEGDEELLWGDNYQ 710

Query: 275 VDYCDKAI------TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           V   D A       T    S G+    +V + LA  + I        +   DE +++LD 
Sbjct: 711 VVLRDMADGQLRERTDDQLSGGQMMSAVVALRLALLQTIGAR-----VAFFDEPTSNLDA 765

Query: 329 DKRNALFRIVTDIGS 343
            +R  L      I  
Sbjct: 766 ARRENLAHAFRAIDV 780


>gi|332665782|ref|YP_004448570.1| SMC domain-containing protein [Haliscomenobacter hydrossis DSM
          1100]
 gi|332334596|gb|AEE51697.1| SMC domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 550

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 13/71 (18%)

Query: 5  IKIKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAISFLSP---GRG--- 55
          ++I  L +  F+ +  LR+      A+  + +G NG GK+++ +A  +L+    G+    
Sbjct: 1  MRITKLELKNFKRFTDLRIEHIPPQAKLVLLIGSNGSGKSSVFDAFQYLNSIKDGKSRDV 60

Query: 56 ----FRRASYA 62
              FR+   A
Sbjct: 61 QSNYFRKNIDA 71


>gi|300087679|ref|YP_003758201.1| Sigma 54 interacting domain-containing protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527412|gb|ADJ25880.1| Sigma 54 interacting domain protein [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 581

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 26/201 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  F           +   +  G+ G GK+ +++A+S L  GR           R
Sbjct: 2   LLRLHVKNFGIIEDFDWTPGSGLNVLTGETGAGKSLVVDALSALLSGR-----LDDSSIR 56

Query: 67  IGSPSFFSTFAR----------------VEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            G+                         ++  +G+  IS+ L  +  R+V  L  + V  
Sbjct: 57  HGTDETRVEGTFELSSDTELLSLLTAKGIDTADGILIISLSL-KQGGRTVTRLNGDSVPR 115

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRG 168
            ++ E+ +  R+  +      +          FLD    V  +       +   +R  + 
Sbjct: 116 SLISEIGR--RLVDIHSQSQHLSLLDRASHLDFLDSYAGVVELRQEFASFVQTLQRTRKQ 173

Query: 169 RNRLLTEGYFDSSWCSSIEAQ 189
             +L  E   D+     ++ Q
Sbjct: 174 LEQLTRESEEDARQADFLQFQ 194


>gi|237667209|ref|ZP_04527193.1| gp49 [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|237655557|gb|EEP53113.1| gp49 [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 656

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYAD 63
           + IK L +  F+    L + F  + T   G+NG GK+ I++A  ++  G+    RA++  
Sbjct: 1   MYIKKLGLENFKKVKGLDIEFGNELTTIAGENGTGKSTIMDAFMWVLFGKDSHDRANFE- 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVV 113
             +    +       V  +    D    +   +     R ++ N    + +
Sbjct: 60  -VQTLDENNNVIHGLVHSVTAYLDANGTERVLKRTLEERWVKPNGKAEKEL 109


>gi|257059400|ref|YP_003137288.1| hypothetical protein Cyan8802_1541 [Cyanothece sp. PCC 8802]
 gi|256589566|gb|ACV00453.1| hypothetical protein Cyan8802_1541 [Cyanothece sp. PCC 8802]
          Length = 131

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 15/103 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR-----A 59
           +K+    I  F++   + L F    TI VG N  GK+N LEA++FL      R       
Sbjct: 3   LKLTSAKIQNFKSLGDVTLNFRD-LTILVGANSSGKSNCLEALNFL----SERAEEGTPP 57

Query: 60  SYADVT----RIGSPSFFSTFARV-EGMEGLADISIKLETRDD 97
           S +D      +I + +  +    + +  E  AD  I L T + 
Sbjct: 58  SDSDTIKKILKIDAHTGINIAITIQDDNEKKADYKITLNTTNS 100


>gi|166363921|ref|YP_001656194.1| hypothetical protein MAE_11800 [Microcystis aeruginosa NIES-843]
 gi|166086294|dbj|BAG01002.1| hypothetical protein MAE_11800 [Microcystis aeruginosa NIES-843]
          Length = 364

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          IK + IS FR +   ++    +  +  G N  GKT +LEAI   S 
Sbjct: 2  IKDIEISNFRCFEHTKIEGFERVNLIGGKNNSGKTALLEAIFLYSY 47


>gi|153869698|ref|ZP_01999238.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152073829|gb|EDN70755.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 321

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          +  L I  FR +  L +    +  +FVG N  GKT +LEA+   + 
Sbjct: 2  LDSLYIRNFRLFKELTIERLGRVNLFVGKNNAGKTCLLEALWIYAY 47


>gi|329936999|ref|ZP_08286628.1| hypothetical protein SGM_2120 [Streptomyces griseoaurantiacus
          M045]
 gi|329303606|gb|EGG47491.1| hypothetical protein SGM_2120 [Streptomyces griseoaurantiacus
          M045]
          Length = 413

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          ++  L++  FR+   + +      T+ VG NG GK+N+L+   FL+
Sbjct: 4  RLLELHVENFRSLREVTVPLGP-LTVLVGPNGAGKSNVLKVFDFLA 48


>gi|329912784|ref|ZP_08275801.1| hypothetical protein IMCC9480_910 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545538|gb|EGF30725.1| hypothetical protein IMCC9480_910 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 397

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/387 (16%), Positives = 123/387 (31%), Gaps = 48/387 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYAD 63
           ++++ + +  FR++  + L    +  + VG NG GK+ +    S  +  R        A 
Sbjct: 1   MQVESIRLKNFRSFREITLRDIPRFCVLVGANGTGKSTLF---SVFAFLRDAMTTNLTAA 57

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + ++G    FS   R     G  +I IKL T        L         +DE+     + 
Sbjct: 58  LGKLGGSKGFSE-VRSRNTSGPIEIEIKLRTVLSSKKSQLI---TYELHIDEVGGRPVV- 112

Query: 124 WLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
                + +   G S +   FLD    V          + D   L R + +L +       
Sbjct: 113 --AREILKYRRGSSGQPWHFLDFSNGVGEAVTNELDSISDETDLKREQQKLKSPDILAIK 170

Query: 182 WCSSIEA--QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
             +  E    +  LG  I              + ++      P ++      L  + +  
Sbjct: 171 GLAQFERFPAVVALGNLIENW----------HLSDFHISRARPEVEAGYAEHLSREGENL 220

Query: 240 FCALK-------EEYAKKLFDGRKM-----DSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
              ++       + +   L   +          ++ T  G           ++     + 
Sbjct: 221 SLVIEYLFKQHHDIFLTILERLQARVPGVTKVEAKTTEEGRVLLKFQDGSFEEPFLARYV 280

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV---TDIGSQ 344
           S G  K+      LA+  L+ +     P+L ++E    L       L        + G Q
Sbjct: 281 SDGTIKM------LAYLVLLYDPI-PHPLLCVEEPENQLYPSLLWDLAEEFRSYAERGGQ 333

Query: 345 IFMTGTDKSVFDSLNETAKFMRI-SNH 370
           +F+T       +++N    F  +  N 
Sbjct: 334 VFVTSHSPDFLNAVNLNEVFWLVKENG 360


>gi|313906053|ref|ZP_07839405.1| chromosome segregation protein SMC [Eubacterium cellulosolvens 6]
 gi|313469098|gb|EFR64448.1| chromosome segregation protein SMC [Eubacterium cellulosolvens 6]
          Length = 1186

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 108/307 (35%), Gaps = 47/307 (15%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + +  F+++A   +L FD   T  VG NG GK+N+ +A+ ++      +  R  +
Sbjct: 1   MYLKSIEMQGFKSFAMKTKLEFDNGVTGIVGPNGSGKSNVGDAVRWVLGEQSAKQLRGGN 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ +     F S    ++  +         + +  +  RS      +N    R
Sbjct: 61  MQDVIFAGTQNRKPLGFASVAITLDNADRKLAFDADEVTVTRKLYRSGESEYLLNGRNCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHR----- 156
           + D         + K          +++I SG   ERR   D    +     R       
Sbjct: 121 LRDINELFYDTGIGKEGYSIIGQGQIEKILSGKPEERRELFDEAAGIVKFKRRKATSLKK 180

Query: 157 -----RRMIDFERLMRG--RNRLLTEGYFDSSW--------CSSIEAQMAELGVKINIAR 201
                  +I    ++    R     EG    +           +++ Q+ ++  K    +
Sbjct: 181 LSDEQSNLIRVNDILSEVTRQLGPLEGQAKKAEEYLTKRDSLRTMDIQLFQIDEKETETQ 240

Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +  +     LI E    +    ++ +   + D +   S   L ++  + L +  + D + 
Sbjct: 241 LSALGE-KKLIAENQLADLAGQLEKTRQEYEDIEV--SLAELDQKLTE-LREQNQKDEVQ 296

Query: 262 RRTLIGP 268
           ++   G 
Sbjct: 297 KQQYKGQ 303


>gi|49474447|ref|YP_032489.1| DNA repair protein recN [Bartonella quintana str. Toulouse]
 gi|49239951|emb|CAF26356.1| DNA repair protein recN [Bartonella quintana str. Toulouse]
          Length = 553

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 91/253 (35%), Gaps = 34/253 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I       +L + F +  ++  G+ G GK+ +L+A+S    GRG      A + R
Sbjct: 2   LIQLSIHNIVLIETLDIHFTSGLSVLTGETGAGKSILLDALSLALGGRG-----DASLVR 56

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+     T               R  G +   DI ++     D   R    + V    +
Sbjct: 57  HGATQGQVTAVFDVPVSHPARQLIRENGFDDEGDIILRRVQSSDGRSRVFINDQVASVAL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRG 168
                H+ +       DR    ++M  R+ LD      D      +  R   +FE  ++ 
Sbjct: 117 MRNVGHMLVEIHGQHDDRALVDVAM-HRQLLDTFGGLEDETENLRQCYRIWREFEECLQQ 175

Query: 169 RNRLLTEGYFDSSWCSS-------IEAQMAELGVKINIARVEM--INALSSLIMEYVQKE 219
           +   +     ++ +  +       ++ Q+ E    +++ R +M  +  ++  I E     
Sbjct: 176 QRLKVENSVRETDYLRACVEELEGLDFQVGEEDA-LSLRRADMLKLEKIAMDIKEADDLL 234

Query: 220 NFPHIKLSLTGFL 232
           + P   + +   L
Sbjct: 235 SGPKSPIPVLSHL 247


>gi|322369946|ref|ZP_08044508.1| chromosome segregation protein SMC [Haladaptatus paucihalophilus
          DX253]
 gi|320550282|gb|EFW91934.1| chromosome segregation protein SMC [Haladaptatus paucihalophilus
          DX253]
          Length = 1192

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + IK L + +F+++     + F    T+  G NG GK+NI++++ F   L+  RG R   
Sbjct: 1  MHIKTLVLDKFKSFGRKTEIPFYEDFTVVTGPNGSGKSNIIDSVLFALGLARTRGIRAEK 60

Query: 61 YADVT 65
            D+ 
Sbjct: 61 LTDLI 65


>gi|254707775|ref|ZP_05169603.1| chromosome segregation protein SMC [Brucella pinnipedialis
           M163/99/10]
          Length = 265

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 84/244 (34%), Gaps = 45/244 (18%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR--MVFAIDPRHRRR 158
             R  D   L          PSM        +       RR  L+    +  +  R    
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLEEAAGISGLHTR---- 176

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI----NIARVE-MINALSSLIM 213
               E  +R R           +    ++  + ELG +I      AR      +LS+ I 
Sbjct: 177 --RHEAELRLRAA--------ETNLERLDDVVGELGSQIESLKRQARQANRFKSLSADIR 226

Query: 214 EYVQ 217
              Q
Sbjct: 227 RAEQ 230


>gi|218556834|ref|YP_002389748.1| hypothetical protein ECIAI1_4519 [Escherichia coli IAI1]
 gi|218363603|emb|CAR01260.1| conserved hypothetical protein, putative P-loop containing
          nucleoside triphosphate hydrolases [Escherichia coli
          IAI1]
          Length = 385

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY----A 62
          IK + +  F++Y            +F G+N VGK+ +++AI  +     F   +      
Sbjct: 6  IKSIKLKNFKSYKEQSFDLS-GLNVFCGNNSVGKSTVMQAIGMV-LQSDFGSKNDIKLNG 63

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIK 91
          ++  IG           +  +    +S+K
Sbjct: 64 ELINIGRIDDIINDFISDDDQLKITLSVK 92


>gi|182417298|ref|ZP_02948641.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|182378859|gb|EDT76376.1| conserved hypothetical protein [Clostridium butyricum 5521]
          Length = 656

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYAD 63
           + IK L +  F+    L + F  + T   G+NG GK+ I++A  ++  G+    RA++  
Sbjct: 1   MYIKKLGLENFKKVKGLDIEFGNELTTIAGENGTGKSTIMDAFMWVLFGKDSHDRANFE- 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVV 113
             +    +       V  +    D    +   +     R ++ N    + +
Sbjct: 60  -VQTLDENNNVIHGLVHSVTAYLDANGTERVLKRTLEERWVKPNGKAEKEL 109


>gi|45201073|ref|NP_986643.1| AGL023Wp [Ashbya gossypii ATCC 10895]
 gi|44985856|gb|AAS54467.1| AGL023Wp [Ashbya gossypii ATCC 10895]
          Length = 1222

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 102/330 (30%), Gaps = 46/330 (13%)

Query: 6   KIKFLNISEFRNYASL-RLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           ++  L +  F++Y  +  + F  +     VG NG GK+N+++AISF+   R    R ++ 
Sbjct: 3   RLIGLEVKNFKSYKGVHNVGFGGKNFISIVGPNGSGKSNMMDAISFVLGIRSSHLRSSAL 62

Query: 62  ADVTRIG-------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            D+   G               ++ + F   +   G            +      +++  
Sbjct: 63  VDLIYRGRMEEGGSAHENNPKSAYVTAFYVKQDASGAERRMEFTRVIHNTGDSTYKLDGK 122

Query: 109 VIRVVDE---------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRR 157
            +   +          L K          +++I S   ++  +  +++         + R
Sbjct: 123 TVGYKEYVDVLEGERILVKARNFLVFQGDVEQIASQSGVDLTKLFEQVSGSVQYQREYER 182

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSI------EAQMAELGVKINIARVEM----INA 207
              D+E+     N  L           S       E Q   L  +    + +     +  
Sbjct: 183 LKDDYEKASAEYNESLKARRKMQIDLKSFKEGVQKEEQYISLLAERVKLQQQFMLWQLFH 242

Query: 208 LSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
           L S     V        KLS L   L  +      +      ++L   R+ +++      
Sbjct: 243 LQSKRSGLVASLKDSKAKLSQLKRQLSNEEAILGKSKSLVAKEELLLARRRETLL----- 297

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
              +         + + +     G  + ++
Sbjct: 298 --QKQQDKARLNAQLLPVGSARQGTTRRMV 325


>gi|86147985|ref|ZP_01066288.1| predicted ATP-dependent endonuclease, OLD family protein [Vibrio
          sp. MED222]
 gi|85834209|gb|EAQ52364.1| predicted ATP-dependent endonuclease, OLD family protein [Vibrio
          sp. MED222]
          Length = 651

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +KI+ + +  FR++    ++ D  ++ FVG NG GK+ ++ A++     R FR +   D+
Sbjct: 1  MKIESIRVKNFRSFKDETILLDD-YSCFVGSNGAGKSTVMNALNV--FFRQFRDSKT-DL 56

Query: 65 TRIGSPSF 72
          +++    F
Sbjct: 57 SKLSKEDF 64


>gi|261416065|ref|YP_003249748.1| hypothetical protein Fisuc_1671 [Fibrobacter succinogenes subsp.
          succinogenes S85]
 gi|261372521|gb|ACX75266.1| hypothetical protein Fisuc_1671 [Fibrobacter succinogenes subsp.
          succinogenes S85]
          Length = 664

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFD-----AQHTIFVGDNGVGKTNILEAISFLSPG 53
          + ++ + +  FR Y    L F         TI +G+NG GKT  L++  +   G
Sbjct: 1  MLLESIKLHNFRQYRDAFLDFAQDVHGKNVTIIIGENGSGKTTFLQSFFWCLYG 54


>gi|209946210|gb|ACI97336.1| SMC1 [Drosophila yakuba]
          Length = 306

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    D  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPISRSCYVTAKFVLNQ-DSHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|269115245|ref|YP_003303008.1| ABC transporter ATP-binding protein [Mycoplasma hominis]
 gi|268322870|emb|CAX37605.1| P115-like (Mycoplasma hyorhinis) ABCtransporter ATP-binding protein
           [Mycoplasma hominis ATCC 23114]
          Length = 978

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 53/165 (32%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           +K+  +    F+++A  + L FD      +G NG GK+NI +AI   L        R  +
Sbjct: 1   MKLIQVEAHGFKSFADKVTLKFDGGIVAIIGPNGSGKSNINDAIRWVLGETSSKVLRGDT 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI-----SIKLETRDDRSVRCLQINDVVI 110
             DV   GS               +  +   DI     +I              IN  + 
Sbjct: 61  MEDVIFSGSKTEKEMDRAEVILTFDNKDRSCDIPYDVFTISRVLTRGNGSNEYYINGELA 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR 146
           R  D + +    S +  S   I               +RR   + 
Sbjct: 121 RQRD-IKEIAMQSGISKSSLAIIGQGTISNIAESTPEKRREIFED 164


>gi|222087292|ref|YP_002545829.1| chromosome partition protein [Agrobacterium radiobacter K84]
 gi|221724740|gb|ACM27896.1| chromosome partition protein [Agrobacterium radiobacter K84]
          Length = 604

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I  L I  FR      + F    T+ VG N  GKT ++EA++ L
Sbjct: 1  MQIAKLEIENFRGIREGVVRFAPH-TVLVGSNNCGKTTVVEALALL 45


>gi|157149277|ref|YP_001456596.1| hypothetical protein CKO_05117 [Citrobacter koseri ATCC BAA-895]
 gi|157086482|gb|ABV16160.1| hypothetical protein CKO_05117 [Citrobacter koseri ATCC BAA-895]
          Length = 362

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          IK L+I  +R+     L  + Q  I  G NG GK+NI +AI  +
Sbjct: 2  IKTLHIENYRSIRHQSLELE-QLNIVFGPNGTGKSNIYKAIHLM 44


>gi|104774252|ref|YP_619232.1| chromosome partition protein SMC [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423333|emb|CAI98180.1| Chromosome partition protein SMC [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 1181

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 95/283 (33%), Gaps = 36/283 (12%)

Query: 12  ISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYADVTRI 67
           +  F+++A    + F    T  VG NG GK+NI EAI ++      +  R  +  DV   
Sbjct: 3   LEGFKSFADKTVIDFTKGITGIVGPNGSGKSNITEAIRWVMGEGSAKSLRGRNMKDVIFA 62

Query: 68  GSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSV-RCLQINDVVIRVVDELNK 118
           GS      +        +  +   D S   + +  R  +S      IN   +R+ D    
Sbjct: 63  GSQFRKPLNRAEVTMVFDNRDRELDFSADQVSITRRILKSGDNEYLINQQPVRLRDVRAL 122

Query: 119 HLRISWLVPSM--------DRIFSGLSMERRRFLDR--MVFAIDPRHR----------RR 158
            L       S+        D+I +  + ERR   +    V     + +            
Sbjct: 123 FLDSGISQNSLAIISQGRVDQILNSQARERRGIFEEAAGVLHFKQQKQQAQRQLETTNDN 182

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +I    L+    + L   +  SS     + Q A L   +       I  L     E  QK
Sbjct: 183 LIRINDLVNELEKRLEPLHEQSSLAQEYQFQKAALDEDLKTLLAFEIADLDQEEREVSQK 242

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                  LS    LD +  QS   L  +  +   + +K D + 
Sbjct: 243 LAKSQELLS---RLDAEVKQSQAKLAAKRQEFQLESQKRDQVQ 282


>gi|5880614|gb|AAD54769.1|AF120932_1 SMC-like protein [Arabidopsis thaliana]
 gi|5880616|gb|AAD54770.1|AF120933_1 SMC-like protein [Arabidopsis thaliana]
          Length = 1055

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 78/263 (29%), Gaps = 23/263 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I  + +  F  ++ L++ F        G NG GK+ IL A+      R     R A+  D
Sbjct: 22  ILRIKVENFMCHSYLQIEFGEWVNFITGQNGSGKSAILTALCIAFGCRARGTQRAATLKD 81

Query: 64  VTRIGSPSFFS---------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             + G                  + E   G+  I  ++      +V    +   V    D
Sbjct: 82  FIKTGCSYAVVQVEMKNSGEDAFKSEIYGGVIIIERRITESATATVLKDYLGKKVSNKRD 141

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + +    +      +          ++            R +      ++  N LL 
Sbjct: 142 ELRELVEHFNIDVENPCVVMSQDKAGSSYI-LECKGNSSSFLRNL------LQQVNDLLQ 194

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
             Y   +  ++I  ++      I       I+ L   I    Q E        L   L  
Sbjct: 195 SIYEHLTKATAIVDELENTIKPIEKE----ISELRGKIKNMEQVEEIAQRLQQLKKKLAW 250

Query: 235 KFDQSFCALKEEYAKKLFDGRKM 257
            +        +E  +K+   ++ 
Sbjct: 251 SWVYDVGRQLQEQTEKIVKLKER 273


>gi|37676401|ref|NP_936797.1| ATP-dependent endonuclease [Vibrio vulnificus YJ016]
 gi|37200943|dbj|BAC96767.1| predicted ATP-dependent endonuclease [Vibrio vulnificus YJ016]
          Length = 543

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + IS FR    L L FD   T  +G+N  GK+++L+A+S   P       + A++
Sbjct: 1   MLLERIEISGFRGIRRLSLSFDE-LTTLIGENTWGKSSLLDALSVALP-------TDAEL 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            +     F   ++          I +   + D    +  +   +  
Sbjct: 53  YQFEMSDFHVDYSISHPQTQHLQIVLCFRSTDRHETKAGRYRRLKP 98


>gi|134298736|ref|YP_001112232.1| ATP-dependent OLD family endonuclease [Desulfotomaculum reducens
           MI-1]
 gi|134051436|gb|ABO49407.1| ATP-dependent endonuclease of the OLD family-like protein
           [Desulfotomaculum reducens MI-1]
          Length = 591

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  + I  FR      +      +  +G N  GK++IL AI  L   +        DV
Sbjct: 1   MKLSKVEIKNFRRVEHAEINLSPA-SFIIGPNNYGKSSILRAIDALLSLK-------EDV 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADIS-IKLETRDDRSVRCLQINDV 108
            +           R + +E     S I  ET + R  +   IN  
Sbjct: 53  IKPDDFRLLPDGNRCQTIEICGWFSDIDPETANSRGFKGRVINGQ 97


>gi|157374874|ref|YP_001473474.1| chromosome segregation protein SMC [Shewanella sediminis HAW-EB3]
 gi|157317248|gb|ABV36346.1| chromosome segregation protein SMC [Shewanella sediminis HAW-EB3]
          Length = 299

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 107/287 (37%), Gaps = 46/287 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++  S ++ F    +  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDSTKIPFLNPLSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
            ADV   GS +            F +   R+ G      +IS+K +   D       +N 
Sbjct: 61  MADVIFNGSSARRPVSVAGVELLFENQDGRLTGQYASYQEISVKRQVTRD-GDSSYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               E R F++        R++ R
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQELRVFIEEAAG--ISRYKER 176

Query: 159 MIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
             +   R+   R  L   G   +     +E ++AE        R            E+ Q
Sbjct: 177 RRETENRIRHTRENLERLGDIRTELGRQLE-KLAEQASAAKQYR------------EFKQ 223

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
            E     +LS++ +++         L+    +   D  ++D+   +T
Sbjct: 224 SERILDSELSVSRYIELTSQTEKLTLEVNKLE--LDKAELDAEKEKT 268


>gi|15642383|ref|NP_232016.1| hypothetical protein VC2386 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121591075|ref|ZP_01678387.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|153820043|ref|ZP_01972710.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|229507550|ref|ZP_04397055.1| ATP binding protein [Vibrio cholerae BX 330286]
 gi|229519390|ref|ZP_04408833.1| ATP binding protein [Vibrio cholerae RC9]
 gi|229607056|ref|YP_002877704.1| ATP binding protein [Vibrio cholerae MJ-1236]
 gi|254849507|ref|ZP_05238857.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255746939|ref|ZP_05420884.1| ATP binding protein [Vibrio cholera CIRS 101]
 gi|262161518|ref|ZP_06030628.1| ATP binding protein [Vibrio cholerae INDRE 91/1]
 gi|298500254|ref|ZP_07010059.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656958|gb|AAF95529.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|53148487|dbj|BAD52080.1| hypothetical nucleotide-binding protein [Vibrio cholerae]
 gi|121547080|gb|EAX57216.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|126509413|gb|EAZ72007.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|229344079|gb|EEO09054.1| ATP binding protein [Vibrio cholerae RC9]
 gi|229355055|gb|EEO19976.1| ATP binding protein [Vibrio cholerae BX 330286]
 gi|229369711|gb|ACQ60134.1| ATP binding protein [Vibrio cholerae MJ-1236]
 gi|254845212|gb|EET23626.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255735341|gb|EET90741.1| ATP binding protein [Vibrio cholera CIRS 101]
 gi|262028829|gb|EEY47483.1| ATP binding protein [Vibrio cholerae INDRE 91/1]
 gi|297540947|gb|EFH77001.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 540

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 136/373 (36%), Gaps = 39/373 (10%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +I+++ +++ +++ ++ L+     +  TI +G+NG GK+ ILE+IS              
Sbjct: 61  KIRLRNISLYDYKKFSKLKFTSSEKNTTIIIGNNGSGKSTILESISKCLQFLS------- 113

Query: 63  DVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRS------VRCLQINDVVIRVV 113
           D  RI + +   F  +   +  + G   +   LE  +D S           I+  V   +
Sbjct: 114 DNIRIQNNNNYKFQDSEINIHSISGQTIVRCILEIENDFSFSCSLTKNRENISRKVSSEL 173

Query: 114 DELNKHLRISWLVPSMDR------IFSGLSMERRRFL--DRMVFAIDPRHRRRMIDFERL 165
           +E     R+      +D       + +   +ER   L  D  V   + + + +  D    
Sbjct: 174 EEFKALARMYQRSNELDNNTLSYPLLAYYPVERSVTLKRDDAVKYYERK-KAKYSDKSEG 232

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPH 223
           ++      +      SW   I+  + E      I    +E +  LS    +         
Sbjct: 233 LKNAFDGTSNFNDFFSWYKEIDDIINEFKANDSITKEEIEYL--LSKTDNKEKIGSLISQ 290

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
           + L      +   D+ F   +++  ++       D    +    PH  D+ V      I+
Sbjct: 291 L-LEKKNNYNNNEDREFLIRQQKVIQESIKTFVSDIDQVKISRTPHL-DMTVIKNGSEIS 348

Query: 284 IAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           I + S GE+ ++ +       L      + N      I+L+DEI  HL    +  + + +
Sbjct: 349 IFNLSQGEKTLIALVSDIARRLVILNPSLENPLNGYGIVLIDEIDLHLHPKWQQTIVQKL 408

Query: 339 TDI--GSQIFMTG 349
            +     Q  ++ 
Sbjct: 409 ENTFPNIQFILST 421


>gi|84685466|ref|ZP_01013364.1| SMC protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84666623|gb|EAQ13095.1| SMC protein [Rhodobacterales bacterium HTCC2654]
          Length = 1151

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 30/224 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+ ++      +  R   
Sbjct: 1   MQFTRLRLNGFKSFVDPTDLVIANGLTGVVGPNGCGKSNLLEALRWVMGENRAKAMRGDG 60

Query: 61  YADVT-----RIGSPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV        G+ +F     +++  E LA         +++  R  R +    ++N  
Sbjct: 61  MEDVIFAGTSSRGARNFAEVVLQIDNSERLAPSGFNETDMLEIVRRITRDAGSAYKVNTK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQLLFADASTGAHSPALVRQGQISELINAKPKNRRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARV 202
             E  ++ ++        D      ++   Q+A    +    R 
Sbjct: 177 RHEAELKLKSTEQNLARVDDVIEQLATQLGQLARQAKQAQRYRE 220


>gi|302851666|ref|XP_002957356.1| structural maintenance of chromosomes protein 2 [Volvox carteri f.
           nagariensis]
 gi|300257315|gb|EFJ41565.1| structural maintenance of chromosomes protein 2 [Volvox carteri f.
           nagariensis]
          Length = 199

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 18/121 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + I  + I  F++YAS + L  FD       G NG GK+NIL++I F+   +     R  
Sbjct: 1   MYISEVCIEGFKSYASRVTLSNFDQCFNAITGLNGSGKSNILDSICFVLGIKNLSQVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++  + G          +            G E    ISI  +       + L IN 
Sbjct: 61  SLQELVYKQGQAGITKATVSITFRNDDPKKAPTGFEDKETISITRQVVIGGRNKYL-ING 119

Query: 108 V 108
           V
Sbjct: 120 V 120


>gi|315268062|gb|ADT94915.1| chromosome segregation protein SMC [Shewanella baltica OS678]
          Length = 1169

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 32/229 (13%)

Query: 1   MTNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGF 56
           +T  +++K + ++ F+++    ++ F    T  +G NG GK+N+++A+ ++   S  +  
Sbjct: 28  LTGTMRLKQIKLAGFKSFVDPTKIPFLQALTAIIGPNGCGKSNVIDAVRWVLGESSAKHL 87

Query: 57  RRASYADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDR-SVRCL 103
           R  S ADV   GS +            F +   R+ G     +  I ++ +  R      
Sbjct: 88  RGDSMADVIFNGSSARKPVSVAGVELIFENKDGRLAGQYASYE-EIAVKRQVSRDGESWY 146

Query: 104 QINDVVIRVVDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPR 154
            +N    R  D +      + L P            R+      + R F++        R
Sbjct: 147 FLNGQKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAG--ISR 203

Query: 155 HRRRMIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
           ++ R  +   R+   R  L   G   S     ++ ++A+        R 
Sbjct: 204 YKERRRETENRIRHTRENLERLGDIRSELGKQLD-KLAQQAKAAKQYRE 251



 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 33/178 (18%)

Query: 197  INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            ++  R +++  L ++ +  +++      + S     D   ++    L+E   K   + R 
Sbjct: 955  LDQIRQKIV-RLGAINLAAIEEFEQQSERKSYLDHQDDDLNKGLATLEEAIRKIDKETRS 1013

Query: 257  M----------DSMS--------RRTLIGPHRSDLIVDY--------CDKAITIAHGSTG 290
                       D            R  +     DL+             K  TI   S G
Sbjct: 1014 RFKTTFDSVNEDLGRLFPKVFGGGRAYLALTDDDLLETGVTIMAQPPGKKNSTIHLLSGG 1073

Query: 291  EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FM 347
            E+ +  + +  A  RL       AP  +LDE+ A LD+       R++ ++   + F+
Sbjct: 1074 EKALTALSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVERFCRLLKEMSQSVQFI 1126


>gi|261315262|ref|ZP_05954459.1| SMC protein [Brucella pinnipedialis M163/99/10]
 gi|261304288|gb|EEY07785.1| SMC protein [Brucella pinnipedialis M163/99/10]
          Length = 267

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 84/244 (34%), Gaps = 45/244 (18%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 3   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 62

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 63  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 122

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDR--MVFAIDPRHRRR 158
             R  D   L          PSM        +       RR  L+    +  +  R    
Sbjct: 123 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLEEAAGISGLHTR---- 178

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI----NIARVE-MINALSSLIM 213
               E  +R R           +    ++  + ELG +I      AR      +LS+ I 
Sbjct: 179 --RHEAELRLRAA--------ETNLERLDDVVGELGSQIESLKRQARQANRFKSLSADIR 228

Query: 214 EYVQ 217
              Q
Sbjct: 229 RAEQ 232


>gi|167628432|ref|YP_001678931.1| DNA repair protein recn [Heliobacterium modesticaldum Ice1]
 gi|167591172|gb|ABZ82920.1| DNA repair protein recn [Heliobacterium modesticaldum Ice1]
          Length = 563

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 88/287 (30%), Gaps = 48/287 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  F    +  L       I  G+ G GK+ +++A+  L  GR     + ADV R
Sbjct: 2   LERLRVEHFALIEAAELELSPGMNILTGETGAGKSLVIDAVGLLIGGR-----ATADVVR 56

Query: 67  IGSPSF-FSTFARV-EGMEGLAD-----ISIKLE-----------TRDDRSVRCLQINDV 108
            G+       F R+ EG  G        + +++E            R  +SV  +     
Sbjct: 57  AGADRARIEGFFRLPEGDGGKLRRELEALGVEVEEDDGLLLTREIARGGKSVCRINGRSA 116

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM-- 166
            + +  E+   L           + +    + R  LDR+  +   +    +    R +  
Sbjct: 117 PLSLYREVGGRLIDLQGQHEQQSLMN--PRKHRVLLDRLAGSDGEKALAAVEAAYRALDA 174

Query: 167 --RGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN---------------IARVEMINALS 209
             + R R L +G  D          +A    +I+                 R++ +  L 
Sbjct: 175 VEKERER-LKQGERDRIQRQ---DMLAFQAKEIDAVHLVEGEEEELEQERKRLQNMEKLM 230

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
                         +  +L      +      A  +     L    +
Sbjct: 231 DKTNAAYDALFGGQVGGALELLDRARSAVEEAAAFDSALAALVQNLE 277


>gi|120598460|ref|YP_963034.1| chromosome segregation protein SMC [Shewanella sp. W3-18-1]
 gi|146293462|ref|YP_001183886.1| chromosome segregation protein SMC [Shewanella putrefaciens CN-32]
 gi|120558553|gb|ABM24480.1| chromosome segregation protein SMC [Shewanella sp. W3-18-1]
 gi|145565152|gb|ABP76087.1| chromosome segregation protein SMC [Shewanella putrefaciens CN-32]
          Length = 1145

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 84/225 (37%), Gaps = 32/225 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++  S ++ F    T  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDSTKIPFLQALTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND 107
            +DV   GS +            F +   R+ G     +  I ++ +  R       +N 
Sbjct: 61  MSDVIFNGSSARKPVSVAGVELVFENKEGRLAGQYASYE-EISVKRQVSRDGESWYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++        R++ R
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAG--ISRYKER 176

Query: 159 MIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
             +   R+   R  L   G   S     ++ ++A+        R 
Sbjct: 177 RRETENRIRHTRENLERLGDIRSELGKQLD-KLAQQAKAAKQYRE 220



 Score = 39.9 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 65/204 (31%), Gaps = 19/204 (9%)

Query: 156  RRRMIDFERLMRGR-NRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLI 212
               + + + ++    N L  EG  D   S    I  ++  LG     A  E         
Sbjct: 901  LAALQEQQIVLSQIINTLPAEGSPDKWQSDLDHIRQKIVRLGAINLAAIEEFEQQSERKS 960

Query: 213  MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY---AKKLFDGRKMDSMSRRTLIGPH 269
                Q E+      +L   +     ++    K  +    + L           R  +   
Sbjct: 961  YLDHQDEDLNKGLATLEEAIRKIDKETRTRFKATFDSVNEDLGRLFPKVFGGGRAYLALT 1020

Query: 270  RSDLIVDY--------CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
              DL+             K  TI   S GE+ +  + +  A  RL       AP  +LDE
Sbjct: 1021 EDDLLETGVTIMAQPPGKKNSTIHLLSGGEKALTALSLVFAIFRL-----NPAPFCMLDE 1075

Query: 322  ISAHLDEDKRNALFRIVTDIGSQI 345
            + A LD+       R++ ++   +
Sbjct: 1076 VDAPLDDANVERFCRLLKEMSQSV 1099


>gi|289548463|ref|YP_003473451.1| chromosome segregation protein SMC [Thermocrinis albus DSM 14484]
 gi|289182080|gb|ADC89324.1| chromosome segregation protein SMC [Thermocrinis albus DSM 14484]
          Length = 1165

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 19/158 (12%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASY 61
           I+ + +  F++Y    L +      T  VG NG GK+NI +AISF   ++  R  R  + 
Sbjct: 8   IEKIVVEGFKSYGMNRLEIPLGEGFTAIVGPNGSGKSNIGDAISFALGIATARMLRAKNL 67

Query: 62  ADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVDE 115
           + +           ++        G     D  + +  +     R + +IN   +R  D 
Sbjct: 68  SYLIHTKDGQRAPYAYVEVHFNNFGAFPTEDSHVVISRKVYPDGRSVFRINGQWVREKDL 127

Query: 116 --------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
                   + ++     L   + R      +ERR+ ++
Sbjct: 128 KEFLAAAGIYENAYNVVLQGDVVRFVKMTPVERRKLIE 165


>gi|317154843|ref|YP_004122891.1| SMC domain-containing protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945094|gb|ADU64145.1| SMC domain protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 395

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ ++I  FR +  +         + +G NG GK+   + I FL      +      +
Sbjct: 1   MKIEQIHIRNFRAFRKVTFKDLPSFCVLLGPNGSGKSTFFDVIGFLK--DSLQHNVRQAL 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
            + G   F     R  G E +  I IK         R +
Sbjct: 59  QKRG--GFKEVVTRGHGGEAIL-IEIKFRMPIGGKERLV 94


>gi|260787331|ref|XP_002588707.1| hypothetical protein BRAFLDRAFT_131216 [Branchiostoma floridae]
 gi|229273875|gb|EEN44718.1| hypothetical protein BRAFLDRAFT_131216 [Branchiostoma floridae]
          Length = 1059

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 16/137 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +++  F  ++ L   F       VG NG GK+ +L  +     G+     R  S   
Sbjct: 70  IEAISLKNFMCHSRLEFKFGPNVNFVVGKNGSGKSAVLTGLVVGLGGKATITDRGKSIKS 129

Query: 64  VTRIGSPSF-FSTFARVEGMEGLAD--------ISIKLETRDDRSVRCLQINDVVIRV-- 112
             + G  +   +   R  G+E            +  +L      S R   I    I    
Sbjct: 130 FIKHGQNAAEVAIRIRNRGLEAYKPDEYGEAVIVERRLAQDGATSYRLKSIKGKTISTKR 189

Query: 113 --VDELNKHLRISWLVP 127
             +  +  H  I    P
Sbjct: 190 EELSHVLDHFNIQVDNP 206


>gi|72389452|ref|XP_845021.1| structural maintenance of chromosome 3 [Trypanosoma brucei
          TREU927]
 gi|62176704|gb|AAX70804.1| structural maintenance of chromosome 3, putative [Trypanosoma
          brucei]
 gi|70801555|gb|AAZ11462.1| structural maintenance of chromosome 3, putative [Trypanosoma
          brucei brucei strain 927/4 GUTat10.1]
          Length = 1199

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + IS FR+Y           ++ + VG NG GK+N   AI F
Sbjct: 1  MYIKNILISGFRSYREQAFEQELSPKNNVIVGKNGAGKSNFFAAIQF 47



 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 272  DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
             +          +   S G++ +V + +  A           AP  L DEI A LD + R
Sbjct: 1073 KVSFGLGAAVTDLKQLSGGQKSLVALALIFA-----IQRCDPAPFYLFDEIDAALDTEYR 1127

Query: 332  NALFRIVTDI--GSQIFMTGT 350
             ++ ++++      Q F+T T
Sbjct: 1128 ASVAKLLSKESGSCQ-FITAT 1147


>gi|331035445|gb|AEC53002.1| endonuclease [Synechococcus phage S-CRM01]
          Length = 574

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/297 (17%), Positives = 91/297 (30%), Gaps = 40/297 (13%)

Query: 15  FRNY-----ASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
           ++N+       + +  +  + T+  G NG GK+ IL+A+ +   G+ FR+ +   +    
Sbjct: 9   YKNFLGVGNQPVSIELNKHKTTLIHGTNGSGKSTILDALCYSLYGKPFRKINIPQLINSQ 68

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE------------L 116
           +             +   ++   L+ R    +R  +I D      D              
Sbjct: 69  NNKGLEVSVEFSIGKDDYEVHRGLKPRLFEIIRNGEILDAKAADKDNQATLEQNILKLSY 128

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRR-----FLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
               +I  L  S    F  L  + RR     FLD  VF               L + R R
Sbjct: 129 RSFTQIVILGSSSYVPFMQLPAQGRRDCVEEFLDIKVF----------STMAILAKERFR 178

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            L E           +    +  ++I   R   I  + S   E +         L+L   
Sbjct: 179 SLKEQAASVQR----DISTVQYKLEIQNDR---IEEIQSQTQERINDLLAKITDLNLERT 231

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
           +     +     + E   KL    K +  ++        S        +  TI   S
Sbjct: 232 MIQNGIEVLLEQESELNDKLKSINKRNPRAKILECSNLISSFDTKIAIRNKTIEFYS 288


>gi|328870533|gb|EGG18907.1| structural maintenance of chromosome protein [Dictyostelium
           fasciculatum]
          Length = 1372

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 7   IKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASY 61
           I+ + +  F++YA  ++L  FD       G NG GK+NIL+AI F   +S     R    
Sbjct: 194 IESITLEGFKSYARKIKLDNFDPSFNAITGMNGSGKSNILDAICFVLGISKLGQVRATKL 253

Query: 62  ADVT-RIGSPSFFSTFARV 79
            D+  + G          +
Sbjct: 254 DDLVYKQGQAGITRATVSI 272


>gi|328351620|emb|CCA38019.1| Structural maintenance of chromosomes protein 3 [Pichia pastoris
          CBS 7435]
          Length = 1207

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS------PGRGF 56
          + IK + I  F+ Y +  +      ++ + VG NG GK+N   AI F+         R  
Sbjct: 1  MHIKRIVIQGFKTYKNTTIIEDISPEYNVVVGRNGSGKSNFFAAIRFVLSDDYTHMTRSQ 60

Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
          R++    +   GS +  S +  +        I +
Sbjct: 61 RQS----LIHEGSGTVMSAYVEIVFDNTDRRIQV 90



 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 68/211 (32%), Gaps = 12/211 (5%)

Query: 144  LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARV 202
            +++ +      +++    +    + R+ L+       S   SIE  + ++  +  + A +
Sbjct: 962  VNQGLKQFSHINKKAWDQYNSFAKKRDELVQRREELDSAKDSIED-LIQVSEQRKDEAIL 1020

Query: 203  EMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                 LS    +  +        +L L      +  +   + K        +    +   
Sbjct: 1021 NTFKKLSEAFAQVFELLVPNGMARLVLEKRESIQEKEHPQSNKMNNPGHFENDGDNEPDI 1080

Query: 262  RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
              T  G   S       D+   I   S G++ +  + +  A           AP  L DE
Sbjct: 1081 E-TYSGVSISVSFNSKGDEQQRIEQLSGGQKSLCAIALIFA-----IQKCDPAPFYLFDE 1134

Query: 322  ISAHLDEDKR---NALFRIVTDIGSQIFMTG 349
            + A+LD   R     L   ++   +Q   T 
Sbjct: 1135 VDANLDTQYRTSVARLINRLSRENAQFICTT 1165


>gi|291333631|gb|ADD93323.1| putative RecF/RecN/SMC N terminal domain protein [uncultured
          archaeon MedDCM-OCT-S09-C50]
          Length = 1304

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
          + +K L +  F+++   + +  D   T   G NG GK+N  +AI F+   +  R      
Sbjct: 1  MYLKSLEVLNFKSFKGEVTVPLDRGFTAITGPNGSGKSNCGDAIQFVLGPKSNRVIRAQN 60

Query: 63 --DVTRIGSPS 71
            D+   G  +
Sbjct: 61 STDLIFNGGKN 71


>gi|282859396|ref|ZP_06268503.1| DNA repair protein RecN [Prevotella bivia JCVIHMP010]
 gi|282587830|gb|EFB93028.1| DNA repair protein RecN [Prevotella bivia JCVIHMP010]
          Length = 553

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 21/205 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + I  F     L + F A  ++  G+ G GK+ IL AI  L   R     + + + +
Sbjct: 2   LKKIYIKNFTLIDQLDITFHAGFSVITGETGAGKSIILGAIGLLLGNR-----ADSKMIK 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
           +G               ++ + F  ++      D  I+ E   +   R   IND  + + 
Sbjct: 57  MGEKKCTIEAHFDLSKYNYEAYFEELDIDFEPEDTIIRRELTSNGKSRAF-INDTPVSLQ 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNR 171
           D      ++  +      +       +   +D +         ++     ++   +    
Sbjct: 116 DMRTLGEQLIDIHSQHQNLLLQKEDFQLNVIDTIASDQKEVAAYKAAFQQYKNAEKQLAE 175

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVK 196
           L +           +  Q  EL   
Sbjct: 176 LTSRLAKAKENEDFLRFQYNELASA 200


>gi|255710583|ref|XP_002551575.1| KLTH0A02706p [Lachancea thermotolerans]
 gi|238932952|emb|CAR21133.1| KLTH0A02706p [Lachancea thermotolerans]
          Length = 1228

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          ++  + +  F++Y   + + F ++  T  +G NG GK+N+++AISF+   +    R  + 
Sbjct: 3  RLLGIELYNFKSYKGKVSIGFGESNFTSVIGPNGSGKSNLMDAISFVLGMKSIHLRSHTL 62

Query: 62 ADVTRIG 68
          AD+   G
Sbjct: 63 ADLIYRG 69


>gi|118578978|ref|YP_900228.1| SMC domain-containing protein [Pelobacter propionicus DSM 2379]
 gi|118501688|gb|ABK98170.1| SMC domain protein [Pelobacter propionicus DSM 2379]
          Length = 391

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I+ + I  F++  S+ L    +   F+G NGVGK+NILEAI  L 
Sbjct: 2  IRTVKIEGFKSIPSMMLDLG-RVNCFIGANGVGKSNILEAIGVLG 45


>gi|294811827|ref|ZP_06770470.1| DNA repair protein recN [Streptomyces clavuligerus ATCC 27064]
 gi|326440432|ref|ZP_08215166.1| DNA recombination and repair protein [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324426|gb|EFG06069.1| DNA repair protein recN [Streptomyces clavuligerus ATCC 27064]
          Length = 580

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 76/275 (27%), Gaps = 33/275 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +   +
Sbjct: 9   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADPAL 58

Query: 65  TRIGSPSFFS-------------TFARVEGMEGLADISIKLETRDDRSVRCLQIND--VV 109
            RIG+ S                  A   G E      +   T          +    V 
Sbjct: 59  VRIGAKSAVVEGRIAVPPGAPAALRAEDAGAECEDGTLLISRTVSAEGRSRAHVGGRAVP 118

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDP--RHRRRMIDFERL 165
           + V+ EL   L           +       +R  LDR      + P  R+         +
Sbjct: 119 VGVLSELADELVAVHGQTDQQGLLR--PARQREALDRYAGQAVVKPLERYTAAYRRLRAV 176

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA--RVEMINALSSLIMEYVQKENFPH 223
                 L T     +     +   + E+      A   VE+      L            
Sbjct: 177 ASELETLTTRARERAQEADLLRFGLDEIAAVEPRAGEDVELAAEAERLGHAEALASAASL 236

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
             ++L G  +   D     L     + L   R  D
Sbjct: 237 AHVALAGNPEDPADVDAATLVAGAGRALESVRSHD 271


>gi|258647377|ref|ZP_05734846.1| conserved hypothetical protein [Prevotella tannerae ATCC 51259]
 gi|260852738|gb|EEX72607.1| conserved hypothetical protein [Prevotella tannerae ATCC 51259]
          Length = 717

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +K +NI  FR+Y       F    T+ +GDNG GKT   EA+ +L
Sbjct: 1  MILKSMNIKNFRSYYGDNTFEFSQGLTLIIGDNGDGKTTFFEALEWL 47


>gi|260945191|ref|XP_002616893.1| hypothetical protein CLUG_02337 [Clavispora lusitaniae ATCC
          42720]
 gi|238848747|gb|EEQ38211.1| hypothetical protein CLUG_02337 [Clavispora lusitaniae ATCC
          42720]
          Length = 1190

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISF-LSPGRGF-RRASY 61
          ++  L +  F++Y  + ++ F DA  T  +G NG GK+N+++AISF L       R  + 
Sbjct: 3  RLVGLELHNFKSYKGTAKIGFGDASFTSIIGPNGAGKSNMMDAISFVLGVQSSHLRSQNL 62

Query: 62 ADVTRIGSPSFFSTFARVE 80
           D+   G     +    +E
Sbjct: 63 KDLVYRGRAEMSADSVALE 81


>gi|308233789|ref|ZP_07664526.1| DNA repair protein RecN [Atopobium vaginae DSM 15829]
 gi|328943762|ref|ZP_08241227.1| hypothetical protein HMPREF0091_10452 [Atopobium vaginae DSM 15829]
 gi|327491731|gb|EGF23505.1| hypothetical protein HMPREF0091_10452 [Atopobium vaginae DSM 15829]
          Length = 545

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 82/250 (32%), Gaps = 16/250 (6%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + + I+ L +        +RL      T+  G+ G GKT +L A+  ++  R    + 
Sbjct: 1   MIDELHIQNLAL-----IKDIRLRPACGLTVLTGETGAGKTALLSAVKLITGERANFAS- 54

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
                R GS       AR+       +  + + T D      + +ND ++ +        
Sbjct: 55  ----IREGSTD-LRVEARLIFDNNTDNDIVIVRTLDTSGRSRITLNDHMVSLAGLAKSAA 109

Query: 121 RISWLVP--SMDRIFSG--LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
               +       ++      +     +    +  +   +R     + +L    + L ++ 
Sbjct: 110 PSIDICNQHEHQKLLQSHYQAQILNEWASSNILPVQQHYREAYAQYSKLANQLDELTSQT 169

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                   +++  +A +  ++N  R E              ++    +  + +  +D   
Sbjct: 170 SEMQEKLDALQFMLARVA-ELNPQRGEYEQLQQDCARAEHAQDLMEALYTARSELIDEDK 228

Query: 237 DQSFCALKEE 246
            +   +  +E
Sbjct: 229 ARDSASTAQE 238


>gi|254487276|ref|ZP_05100481.1| DNA repair protein RecN [Roseobacter sp. GAI101]
 gi|214044145|gb|EEB84783.1| DNA repair protein RecN [Roseobacter sp. GAI101]
          Length = 553

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+IS+      L L F     +  G+ G GK+ +L+++ F+   RG      AD+ R
Sbjct: 2   LRGLDISDMLIIDRLELAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RADLVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--QINDVVIRV 112
            G+       A  +  EG A  ++  E         +  +IN    R 
Sbjct: 57  QGAAQG-EVTAWFDLPEGHAAHAVLEEAGLPSGPELILRRINGSDGRK 103


>gi|163738210|ref|ZP_02145626.1| Chromosome segregation protein SMC [Phaeobacter gallaeciensis
           BS107]
 gi|161388826|gb|EDQ13179.1| Chromosome segregation protein SMC [Phaeobacter gallaeciensis
           BS107]
          Length = 1151

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 101/282 (35%), Gaps = 32/282 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+ ++      +  R   
Sbjct: 1   MRFSKLRLNGFKSFVDPTDLLIADGLTGVVGPNGCGKSNLLEALRWVMGENRPKAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+ S     F     +++  E LA         +++  R  R V    + N  
Sbjct: 61  MEDVIFAGTSSRPARNFAEVSLQIDNSERLAPSGFNESDNLEILRRITRDVGSAYKTNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQIAELINAKPKARRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSSLIMEYVQK 218
             E  ++ +N        D      + AQ+++L    +      ++   L       + +
Sbjct: 177 RHEAELKLKNTEQNLLRVDDV-IEQLAAQLSQLARQARHAQRYRDIGEQLRRAEGMLLYR 235

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
                    L    D    +   A K E   ++ DG+++++ 
Sbjct: 236 RWREADDARLEA-EDILRTRETQAAKAEALARVADGKRLEAE 276


>gi|153955850|ref|YP_001396615.1| ATP-dependent endonuclease [Clostridium kluyveri DSM 555]
 gi|219856210|ref|YP_002473332.1| hypothetical protein CKR_2867 [Clostridium kluyveri NBRC 12016]
 gi|146348708|gb|EDK35244.1| Predicted ATP-dependent endonuclease [Clostridium kluyveri DSM
          555]
 gi|219569934|dbj|BAH07918.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 539

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAI 47
          ++++ + I  +R+   + L     +  +  G N  GK+NIL AI
Sbjct: 1  MRLEAIVIKHYRSIERVALKLPPNKPLVLFGPNNAGKSNILSAI 44



 Score = 40.3 bits (93), Expect = 0.55,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD---IGSQI 345
           TGEQ+V+L+    A+  +    TG   +L+++E  AHL    +  L   V D    G Q+
Sbjct: 245 TGEQQVLLMAFVKAYMEVF---TGENFVLIIEEPEAHLHPLAQRWLKEYVVDMCSCGIQV 301

Query: 346 FMTG-----TDKSVFDSL 358
            ++       D    D L
Sbjct: 302 IISTHSAEFIDAEYLDGL 319


>gi|125625013|ref|YP_001033496.1| putative abortive phage resistance [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|124493821|emb|CAL98814.1| putative abortive phage resistance [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071812|gb|ADJ61212.1| putative abortive phage resistance [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 440

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/401 (15%), Positives = 121/401 (30%), Gaps = 56/401 (13%)

Query: 6   KIKFLNISEFRN--YASLRLVFDAQH---TIFVGDNGVGKTN---ILEAISFLSPGRGFR 57
           K+K + I   +N  Y  +           T   G NG GKT    +LE I  L  G+   
Sbjct: 4   KLKSIIIENIKNVKYGEIYFETSEGFLNTTGIYGQNGSGKTTVIDVLEMIKELIQGKKL- 62

Query: 58  RASYADVTRIGSPSFFSTFARV--------EGMEGLADISIKLETRDDRSVRCLQINDVV 109
            + Y+ +      S       +        E +    +I  K            ++N   
Sbjct: 63  GSKYSGLIDFEEISKVRIETEILNESINRYEIVFKKVNIEGKDSIEILSETLSKKLNKKY 122

Query: 110 IR---VVDELNKHLRISW-------LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
            +   +++ L++   IS+       L     +I   +SME     ++  F       + +
Sbjct: 123 QKFKTIIEFLSREKTISFHTLSKFELSEDALKILKSVSME-----NQSSFIFQQNLLKNL 177

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
            DF R    + ++L E    ++         +E G  I+   +  ++   S         
Sbjct: 178 NDFSRADYEK-KILDEFKSFANNLRIYT---SEYGGLISANFMAPVSIYYSEQDSTYNGI 233

Query: 220 -NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK-----MDSMSRRTLIGPHRSDL 273
              P               +          K++  G        D+    +    HR + 
Sbjct: 234 VPVPLGPQGYLSNRFINIYKHILPQMNVLLKQIVPGITIGYDVRDTRLGESGQDEHRVEF 293

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
                 K  ++ + S G +K++ +         +        I++  +    LD      
Sbjct: 294 YSTRDGKKFSLRYESDGIKKIIAL------LNFLIEVYNDPNIIVAID---ELDSGIFEF 344

Query: 334 LFRIV-----TDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
           L   +     T    Q+  T  +  V + L +       +N
Sbjct: 345 LLGEIVSVISTGSKGQVIFTSHNLRVLEVLPKNKVVFSTTN 385


>gi|27366687|ref|NP_762214.1| putative ATP-dependent endonuclease of the OLD family [Vibrio
           vulnificus CMCP6]
 gi|320158579|ref|YP_004190957.1| putative ATP-dependent endonuclease of the OLD family [Vibrio
           vulnificus MO6-24/O]
 gi|27358253|gb|AAO07204.1|AE016808_224 Predicted ATP-dependent endonuclease of the OLD family [Vibrio
           vulnificus CMCP6]
 gi|319933891|gb|ADV88754.1| predicted ATP-dependent endonuclease of the OLD family [Vibrio
           vulnificus MO6-24/O]
          Length = 543

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 8/106 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + IS FR    L L FD   T  +G+N  GK+++L+A+S   P       + A++
Sbjct: 1   MLLERIEISGFRGIRRLSLSFDE-LTTLIGENTWGKSSLLDALSVALP-------TDAEL 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            +     F   ++          I +   + D    +  +   +  
Sbjct: 53  YQFEMSDFHVDYSISHPQTQHLQIVLCFRSTDRHETKAGRYRRLKP 98


>gi|67525011|ref|XP_660567.1| hypothetical protein AN2963.2 [Aspergillus nidulans FGSC A4]
 gi|40744358|gb|EAA63534.1| hypothetical protein AN2963.2 [Aspergillus nidulans FGSC A4]
 gi|259486092|tpe|CBF83658.1| TPA: subunit of the multiprotein cohesin complex (Eurofung)
          [Aspergillus nidulans FGSC A4]
          Length = 1261

 Score = 52.6 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R  + 
Sbjct: 3  KLIRLELYNFKSYKGHHTLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTNL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLIYRG 69


>gi|327474502|gb|EGF19907.1| recombination protein F [Streptococcus sanguinis SK408]
          Length = 75

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 6  KIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          KI  L IS FR++      +       IF G N VGKTN+L AI+     + +  +   +
Sbjct: 3  KISRLKISNFRSFTNEENTIDELDVLNIFAGRNNVGKTNVLRAINLFFNPKSYNPSIDRN 62

Query: 64 VTR 66
            +
Sbjct: 63 AIK 65


>gi|254448680|ref|ZP_05062138.1| chromosome segregation protein SMC [gamma proteobacterium HTCC5015]
 gi|198261688|gb|EDY85975.1| chromosome segregation protein SMC [gamma proteobacterium HTCC5015]
          Length = 1168

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 92/276 (33%), Gaps = 27/276 (9%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++     + F    T  +G NG GK+N ++A+ ++   S  +  R AS
Sbjct: 1   MRLSKIKLAGFKSFVDPTTIAFPTNLTGIIGPNGCGKSNTIDAVRWVMGESSAKHLRGAS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS +            F ++   + G     ++IS + E   +       +N 
Sbjct: 61  MEDVIFKGSSARPPVGKAFVELVFDNSDGSLGGQYSQFSEISTRREVTREGKS-TYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
              R  D +      + L P    I     + R              +        +   
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYAIIEQGMISRLIEAKPEEM---RVYIEEAAGISKYKE 175

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            R              + ++  + E+  +I       ++  +     Y   +     + +
Sbjct: 176 RRRETENRIRHTRDNLARLDDLLDEINKQIGR-----LDRQAKTAERYKGMKEEERTRKA 230

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
               L  +   +    +E Y ++L +  + +   +R
Sbjct: 231 ELLALKWRELNNLVNNRERYLQELQNQVEAEIAKQR 266



 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 71/205 (34%), Gaps = 38/205 (18%)

Query: 171  RLLTEGYFDSSWCSSIEAQMAELGVKINI----------------ARVEMINALSSLIME 214
            R L E   + +   + E Q+ ++  +I+                  R E ++A    + E
Sbjct: 936  RTLLESLPEDAAIKAWEEQVQQIAQRISRLGPINLAAIDEYKETAERKEYMDAQYKDLTE 995

Query: 215  YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
             +        K+      D +  Q F    ++  K++ +         +  +     DL+
Sbjct: 996  ALTTLENAIAKI------DKETRQRFKETFDQVNKRVGEMFPKLFGGGQCHLELTGDDLL 1049

Query: 275  ---VDYCDKAITIA-----HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
               V    +            S GE+ +  V +  A   L       AP  +LDE+ A L
Sbjct: 1050 DTGVSIMARPPGKRISNIHLLSGGEKALTAVAMVFAIFEL-----NPAPFCMLDEVDAPL 1104

Query: 327  DEDKRNALFRIVTDI--GSQ-IFMT 348
            DE       R+V ++    Q IF+T
Sbjct: 1105 DEANVGRFCRMVEEMSKSVQFIFIT 1129


>gi|145345272|ref|XP_001417140.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144577367|gb|ABO95433.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1186

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + I+ + I  F++YA   +V  FD       G NG GK+NIL++I F   +S     R A
Sbjct: 1   MYIEEVCIDGFKSYAKRTVVPGFDPLFNAITGLNGSGKSNILDSICFVLGISNLTHVRAA 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++  + G          V            G E    I++  +       +   IN 
Sbjct: 61  SLQELVYKQGQAGVTKASVSVTFNNEDRTRSPVGYEHCDRITVTRQIVIGGKNK-YMING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   V +   +    
Sbjct: 120 ATAQPTRVQNLFHSVQLNVNNPHFLIMQG 148


>gi|159899159|ref|YP_001545406.1| chromosome segregation protein SMC [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892198|gb|ABX05278.1| chromosome segregation protein SMC [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 1192

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 41/262 (15%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           + +K L I  F+ +A+   + F    T  VG NG GK+N+ +AI ++   + F   R   
Sbjct: 1   MYLKRLEIQGFKTFANRTVIEFPLGVTAIVGPNGSGKSNVTDAIRWVLGEQSFSALRCRR 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+   G     +         ++  +    +     T   RS R       +N   +R
Sbjct: 61  TEDLIYSGGGKRAAQGMAEVALTIDNTDRTLPLDFNEVTITRRSFRSGENEYFLNKNKVR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSG--------LSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D        S L  S   I  G           ERR   +             +   +
Sbjct: 121 LRD---IQEATSPLASSYTLINQGLVDAALTLRPEERRSLFEDAAS-------ISLSVSK 170

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R    R         + +    ++  +AE        R++++   +    +  + E    
Sbjct: 171 RAEAER----RLKQTEDNLGRILDT-LAE-----IEPRLKVLRRQAREAEQVHEIETALQ 220

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
             L +      +  QS  A  E
Sbjct: 221 QALLIAYRRQWQAAQSLVAQAE 242


>gi|261328374|emb|CBH11351.1| structural maintenance of chromosome 3 ,putative [Trypanosoma
          brucei gambiense DAL972]
          Length = 1199

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + IS FR+Y           ++ + VG NG GK+N   AI F
Sbjct: 1  MYIKNILISGFRSYREQAFEQELSPKNNVIVGKNGAGKSNFFAAIQF 47



 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 272  DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
             +          +   S G++ +V + +  A           AP  L DEI A LD + R
Sbjct: 1073 KVSFGLGAAVTDLKQLSGGQKSLVALALIFA-----IQRCDPAPFYLFDEIDAALDTEYR 1127

Query: 332  NALFRIVTDI--GSQIFMTGT 350
             ++ ++++      Q F+T T
Sbjct: 1128 ASVAKLLSKESGSCQ-FITAT 1147


>gi|154508714|ref|ZP_02044356.1| hypothetical protein ACTODO_01222 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798348|gb|EDN80768.1| hypothetical protein ACTODO_01222 [Actinomyces odontolyticus ATCC
           17982]
          Length = 558

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 69/221 (31%), Gaps = 28/221 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L++S      S  + F     +  G+ G GKT +L ++  L   R     + A + R
Sbjct: 2   IESLDMSHLGVIESAHVDFGEGLIVVTGETGAGKTMVLSSLQLLLGAR-----ADAALVR 56

Query: 67  IGSPSF---------FSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            G+                ARVE   GL +   + +      + R              L
Sbjct: 57  SGADHLSVDGIFSVNEEVAARVEEAGGLVEGGELIVGRSVRAAGRSRAHLGSRPVPASVL 116

Query: 117 NKHL-RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
              +  +  +    D+I       +RR LD+        H   + ++    R        
Sbjct: 117 TDIVGSMVTIHGQSDQIRLTGEAAQRRALDQFGGE---EHAALLGEYRAAFRH------- 166

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEM--INALSSLIME 214
                    S+    +E   ++   R  +  I  L   I E
Sbjct: 167 AVEVKHRLDSLRVDASERAEELEDLRAAIKQIEELDPAIGE 207


>gi|47097498|ref|ZP_00235040.1| ATPase involved in DNA repair, putative [Listeria monocytogenes
           str. 1/2a F6854]
 gi|254854551|ref|ZP_05243899.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254900909|ref|ZP_05260833.1| hypothetical protein LmonJ_13881 [Listeria monocytogenes J0161]
 gi|254913877|ref|ZP_05263889.1| ATPase [Listeria monocytogenes J2818]
 gi|254938266|ref|ZP_05269963.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|47014139|gb|EAL05130.1| ATPase involved in DNA repair, putative [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258607950|gb|EEW20558.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|258610876|gb|EEW23484.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293591893|gb|EFG00228.1| ATPase [Listeria monocytogenes J2818]
          Length = 503

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 5   IKI--KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +KI  K L +  F+N+ +L + ++ Q T   G NG GKT+I EA+++L  G         
Sbjct: 1   MKIVFKQLTLENFKNHKNLVVDYE-QVTQISGKNGFGKTSIGEAVTWLLYGTDLLGTKIE 59

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                  P        V  +       + L  +  ++ +   IN+V  R   E    +  
Sbjct: 60  P-----QPLGTEEEVHVSLLINADGKDLLLTKKQKKTAKYA-INEVP-RKATEFADMIDS 112

Query: 123 SW 124
            +
Sbjct: 113 LF 114


>gi|328351729|emb|CCA38128.1| Structural maintenance of chromosomes protein 4 [Pichia pastoris
           CBS 7435]
          Length = 1441

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
           T R+ I  L ++ F++YA  +    F+   +  VG NG GK+N+++A+ F+   R    R
Sbjct: 229 TPRLVIDKLVLTNFKSYAGKQTIGPFNPSFSAIVGPNGSGKSNVIDALLFVFGFRATKMR 288

Query: 58  RASYADVTRIGSPSF 72
           ++   ++    S  F
Sbjct: 289 QSKIKELI-HNSEEF 302


>gi|313156957|gb|EFR56390.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 646

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 124/364 (34%), Gaps = 47/364 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP-------GRG- 55
           + +  +NIS ++ + +  R  F+   ++ VG+NG GK+ I++AI  L         G   
Sbjct: 1   MYLSEINISGYKLFGSDFRATFNEGLSVIVGENGSGKSAIIDAIRLLLNEDEYGRIGISA 60

Query: 56  --FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
             F R        +GS +     AR   +  +  ++       D  +  L +N       
Sbjct: 61  SDFHRPFDKPAKSLGSDN-IKISARFNKLSDVEQVAYLPWINPDNMIEAL-LNFNAENKQ 118

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRMIDFERLMRGRNRL 172
           D   ++ R  W     ++I SG         +  +  AI   +   +         RN L
Sbjct: 119 DNKGRYKRNIW----GNKIASG-------IFEWNLLDAIHCIYLPPL---------RNAL 158

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                +  S  + +   ++    +     +E     S+   + ++ E    +  ++   +
Sbjct: 159 EKLESYKGSRLARLIKNLSPAIPEGEKHPLE--TEFSTFQQKLLEDETIKKVDATIKRNI 216

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRR---TLIGPHRSDLIVDYCDKAITIAHGST 289
                  F         ++   R ++ +       +    + +    + D        S 
Sbjct: 217 IESAGTIFGQDAMIQFAEINFNRIVERLRLLFYPIIPNAGKVNEYEMFRDLNEN----SL 272

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT----DIGSQI 345
           G   ++ +   LA    +S       ILL++E  AHL     + L   ++    +   Q+
Sbjct: 273 GHNNILYLATVLAELEGLSKNETLHKILLIEEPEAHLHPQLLSKLLYFISSKSKEANIQV 332

Query: 346 FMTG 349
            +T 
Sbjct: 333 IITT 336


>gi|167754401|ref|ZP_02426528.1| hypothetical protein ALIPUT_02695 [Alistipes putredinis DSM
          17216]
 gi|167659026|gb|EDS03156.1| hypothetical protein ALIPUT_02695 [Alistipes putredinis DSM
          17216]
          Length = 661

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          IK + +  F+   +L + FD   T   G NG+GKT+I +  ++L  G+
Sbjct: 6  IKEIRLLNFKGLRNLTVEFDPALTEIYGRNGIGKTSIFDGFTWLLFGK 53


>gi|149922144|ref|ZP_01910583.1| DNA repair protein RecN [Plesiocystis pacifica SIR-1]
 gi|149816988|gb|EDM76472.1| DNA repair protein RecN [Plesiocystis pacifica SIR-1]
          Length = 641

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 27/149 (18%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + + I+ L + +      + L F+    +  G+ G GK+ I++A   L+  RG R   
Sbjct: 1   MLDYLHIRGLALLD-----DVALEFEPGMNVLTGETGAGKSIIVDA---LALLRGARGR- 51

Query: 61  YADVTRIGSPSF---------FSTFARVEGMEGLADISIK-----LETRDDRSVR---CL 103
             ++ R G  +              AR+ G     D+ ++     +E +  RS R    +
Sbjct: 52  -GELVREGDEAARVEAQFTVREGVHARLGGFFDTHDLDLENGQLVVERKLKRSGRGRAAV 110

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRI 132
           Q N   + V+ EL   L           +
Sbjct: 111 QSNLTTLSVLSELGGELLEICSQHEHHSL 139


>gi|148259416|ref|YP_001233543.1| chromosome segregation protein SMC [Acidiphilium cryptum JF-5]
 gi|146401097|gb|ABQ29624.1| condensin subunit Smc [Acidiphilium cryptum JF-5]
          Length = 1165

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 86/239 (35%), Gaps = 30/239 (12%)

Query: 6   KIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           +   L IS F+++A    +      T  +G NG GK+N+++A+ +    +  +  R    
Sbjct: 4   RFARLRISGFKSFADPTTIDILPGLTGIIGPNGCGKSNVVDALRWAMGEASAKSLRGGEM 63

Query: 62  ADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDVV 109
            DV   G     + +       +    GLA +       +++  + +R S    +IN   
Sbjct: 64  EDVIFAGTMARAARNLAEVSITLTDTAGLAPVPFQNEPELQVSRKIERGSGSSYRINGRE 123

Query: 110 IRVVD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
           +R  D      +L    R S ++    +  + +    ERR  L+     I   H      
Sbjct: 124 VRARDVATLFADLASGARNSAMISQGRVSALVNARPDERRALLE-EAAGITGLHA---RR 179

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-RVEMINALSSLIMEYVQKE 219
            E  ++ R         D    +  EA++AEL  +   A R   I+ L           
Sbjct: 180 HEAELKLRAAEQNLLRAD-DLRAQQEARLAELRKQARQANRYRNISGLIRDAEAEYLAI 237


>gi|331270253|ref|YP_004396745.1| DNA sulfur modification protein DndD [Clostridium botulinum
          BKT015925]
 gi|329126803|gb|AEB76748.1| DNA sulfur modification protein DndD [Clostridium botulinum
          BKT015925]
          Length = 719

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQ----HTIFVGDNGVGKTNILEAISFLSPG 53
          + I  + +  FR+Y       F  +     T+  G+NG GK+ + EAI     G
Sbjct: 1  MIINSITLKNFRSYEDETTFSFTPKDNKNITLIGGENGAGKSTLFEAIKLCIYG 54


>gi|315185663|gb|EFU19431.1| chromosome segregation protein SMC [Spirochaeta thermophila DSM
           6578]
          Length = 927

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++    R+ F    T  VG NG GK+NI++AI   L     +  R +S
Sbjct: 1   MILKAVELFGFKSFGEKTRIEFREGVTAIVGPNGCGKSNIVDAIKWVLGEQSTKTLRTSS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             +V   G+              +   EG   +    I +  R  RS      IN+  +R
Sbjct: 61  MEEVIFNGTEDRKPLNVAEVTLILSNNEGHLPLDFDEIAIRRRVYRSGESEYAINNAPVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          +D+I S    +RR+  +
Sbjct: 121 LRDVKELFFDTGIGKSAYSIMEQGKIDQILSSRPEDRRQIFE 162


>gi|225620807|ref|YP_002722065.1| chromosome partition protein SmC [Brachyspira hyodysenteriae WA1]
 gi|225215627|gb|ACN84361.1| chromosome partition protein SmC [Brachyspira hyodysenteriae WA1]
          Length = 952

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEA 46
          + IK LN+  F+++A    + F+   T+ +G NG+GK+NI+EA
Sbjct: 1  MYIKNLNLHGFKSFAIETNIEFNEGVTVVLGPNGIGKSNIVEA 43


>gi|56707660|ref|YP_169556.1| hypothetical protein FTT_0525 [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|110670131|ref|YP_666688.1| hypothetical protein FTF0525 [Francisella tularensis subsp.
          tularensis FSC198]
 gi|134301996|ref|YP_001121965.1| hypothetical protein FTW_1017 [Francisella tularensis subsp.
          tularensis WY96-3418]
 gi|187931837|ref|YP_001891822.1| hypothetical protein FTM_1158 [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|224456730|ref|ZP_03665203.1| hypothetical protein FtultM_02802 [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|254370170|ref|ZP_04986176.1| conserved hypothetical protein [Francisella tularensis subsp.
          tularensis FSC033]
 gi|254874476|ref|ZP_05247186.1| conserved hypothetical protein [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|56604152|emb|CAG45158.1| conserved hypothetical protein [Francisella tularensis subsp.
          tularensis SCHU S4]
 gi|110320464|emb|CAL08541.1| conserved hypothetical protein [Francisella tularensis subsp.
          tularensis FSC198]
 gi|134049773|gb|ABO46844.1| hypothetical protein FTW_1017 [Francisella tularensis subsp.
          tularensis WY96-3418]
 gi|151568414|gb|EDN34068.1| conserved hypothetical protein [Francisella tularensis subsp.
          tularensis FSC033]
 gi|187712746|gb|ACD31043.1| conserved hypothetical protein [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|254840475|gb|EET18911.1| conserved hypothetical protein [Francisella tularensis subsp.
          tularensis MA00-2987]
 gi|282158822|gb|ADA78213.1| hypothetical protein NE061598_02965 [Francisella tularensis
          subsp. tularensis NE061598]
          Length = 218

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI  L I  ++N   + +  ++    F+G NG GK+N+LEA+SF+
Sbjct: 1  MKITRLKIKGYKNL-DIDIKHESDIMAFIGLNGSGKSNVLEALSFI 45


>gi|330508914|ref|YP_004385342.1| hypothetical protein MCON_3242 [Methanosaeta concilii GP-6]
 gi|328929722|gb|AEB69524.1| conserved hypothetical protein [Methanosaeta concilii GP-6]
          Length = 1059

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +  L +  F+ Y    + F    T  +G NG GK+ I+EAI++   G
Sbjct: 1  MLLNKLVLRNFKKYRRATIEFQEGLTGIIGSNGSGKSTIVEAIAWALYG 49


>gi|307718735|ref|YP_003874267.1| chromosome partition protein SmC [Spirochaeta thermophila DSM 6192]
 gi|306532460|gb|ADN01994.1| putative chromosome partition protein SmC [Spirochaeta thermophila
           DSM 6192]
          Length = 927

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++    R+ F    T  VG NG GK+NI++AI   L     +  R +S
Sbjct: 1   MILKAVELFGFKSFGEKTRIEFREGVTAIVGPNGCGKSNIVDAIKWVLGEQSTKTLRTSS 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             +V   G+              +   EG   +    I +  R  RS      IN+  +R
Sbjct: 61  MEEVIFNGTEDRKPLNVAEVTLILSNNEGHLPLDFDEIAIRRRVYRSGESEYAINNAPVR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          +D+I S    +RR+  +
Sbjct: 121 LRDVKELFFDTGIGKSAYSIMEQGKIDQILSSRPEDRRQIFE 162


>gi|299069709|emb|CBJ40985.1| hypothethical protein [Ralstonia solanacearum CMR15]
          Length = 170

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +KI+ + I  FR    + + FD+  T F+G NG GK+  L A+ +   G+
Sbjct: 39 MKIQSVRIKNFRALKDVTIPFDS-VTTFIGPNGAGKSTALRALDWYFNGK 87


>gi|284097669|ref|ZP_06385694.1| ATP-dependent endonuclease, OLD family protein [Candidatus
          Poribacteria sp. WGA-A3]
 gi|283830821|gb|EFC34906.1| ATP-dependent endonuclease, OLD family protein [Candidatus
          Poribacteria sp. WGA-A3]
          Length = 153

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 13/91 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-- 62
          +++  + I  FR++    +V D  +T  VG NG GK+N+L+A++       FR  + A  
Sbjct: 1  MRLAEIKIKIFRSFEDETIVLDD-YTCLVGPNGAGKSNVLQALNLF-----FRNTAAASV 54

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLE 93
          D+ ++    F       + +E   ++ +K E
Sbjct: 55 DLLKLSDEDF-----HHKNIERPVEVELKFE 80


>gi|257440764|ref|ZP_05616519.1| putative ATP binding protein [Faecalibacterium prausnitzii
          A2-165]
 gi|257196738|gb|EEU95022.1| putative ATP binding protein [Faecalibacterium prausnitzii
          A2-165]
          Length = 417

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 26/46 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L + +F+ Y   +     + T+  G NG GK+ +L AI++L
Sbjct: 1  MKLTSLYVHDFKGYREHQFDLLGKSTVLFGVNGAGKSTVLTAINYL 46


>gi|123493702|ref|XP_001326352.1| SMC family, C-terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121909265|gb|EAY14129.1| SMC family, C-terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1084

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRG--FRRASYAD 63
           I  + + +F  +  + +   A   + +G NG GK+ I+ A+   L+       R +  + 
Sbjct: 33  IMSIKLKDFMTFEKITIQPGAGLNLIIGPNGSGKSTIVCAVGLGLASSPSILARTSKLSG 92

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV---------VIRVVD 114
             R G     ++   +   +    ++ +++T +    R   IN             RV  
Sbjct: 93  FIRHGCS--IASIKILLKADVPFWVNRRIKTDNSSKWRIKNINGKWKDSSAGEVSQRVSA 150

Query: 115 ELNKHLRISWLVPS 128
              +   +   +P 
Sbjct: 151 LHIQLDNLCMFLPQ 164


>gi|15615339|ref|NP_243642.1| DNA repair and genetic recombination [Bacillus halodurans C-125]
 gi|11134697|sp|Q9K974|RECN_BACHD RecName: Full=DNA repair protein recN; AltName: Full=Recombination
           protein N
 gi|10175397|dbj|BAB06495.1| DNA repair and genetic recombination [Bacillus halodurans C-125]
          Length = 565

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 18/117 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +F     L + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LVELSIKQFAIIEQLTVSFDKGLTVLTGETGAGKSIIIDAIGLLLGGRG-----SAEYVR 56

Query: 67  IGSPSFFS-----------TFARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI 110
            G                  FA+ E +   AD  + +  RD  ++     +IN  ++
Sbjct: 57  YGEKRAEIEGLFILEPKHPAFAKAEALGIQADDGMIVLRRDVTNQGKSICRINGKLV 113


>gi|168697901|ref|ZP_02730178.1| ATPase [Gemmata obscuriglobus UQM 2246]
          Length = 422

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 56/213 (26%), Gaps = 37/213 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFD-------------------------AQHTIFVGDNGVG 39
           + I  L +   R +A   L F                              + +GDNG G
Sbjct: 1   MFITTLELENVRTFAKANLDFVHPDLEYAPAKTPLDKLKKRLPRPRLPNVNLLLGDNGSG 60

Query: 40  KTNILEAISFLSPGRGFRRAS----YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR 95
           KT +L AI+  + G      S       + R G+    +  AR+    GL       E  
Sbjct: 61  KTTLLRAIAMSALGPSVTSPSAGIRDPGLVRRGADLPKNAKARLVSAFGLHPQDRAPEGA 120

Query: 96  DDRSVRCLQIND--VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP 153
             R    +         R +D         +   +   +  G    RR      V   D 
Sbjct: 121 VARGELEVGKRGDTEEFRFLDPDEHVWEPVFEEKNDAFLVVGYGATRR------VEQADR 174

Query: 154 RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
                      +   R   L E  F     +  
Sbjct: 175 FDMGSRTKTRFIRGQRIASLYEDGFSLIPLTYW 207


>gi|158426192|ref|YP_001527484.1| DNA repair protein [Azorhizobium caulinodans ORS 571]
 gi|158333081|dbj|BAF90566.1| DNA repair protein [Azorhizobium caulinodans ORS 571]
          Length = 559

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 23/176 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L+I +      L L  +   T+  G+ G GK+ +L+A+S    GRG        + R
Sbjct: 2   ISSLSIRDIVLIERLDLALNGGLTVLTGETGAGKSILLDALSLALGGRG-----DGSLVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVR-CLQINDVV--IRV 112
            G+     T            A ++G +   +  + +        R    IN+    ++ 
Sbjct: 57  HGADKGQITAVFDIALDHPARALLQGADIADEGEVVVRRVQMADGRTRATINEQPVSVQT 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLM 166
           +  L   L           +        R  LD    + A   +       +  ++
Sbjct: 117 LRALGALLVELHGQHDDRALV--DPATHRALLDAFGGLGADVRKVSELWRAWRAVL 170


>gi|153823341|ref|ZP_01976008.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229512254|ref|ZP_04401733.1| hypothetical protein VCE_003666 [Vibrio cholerae B33]
 gi|126519148|gb|EAZ76371.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|229352219|gb|EEO17160.1| hypothetical protein VCE_003666 [Vibrio cholerae B33]
          Length = 540

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/373 (17%), Positives = 136/373 (36%), Gaps = 39/373 (10%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +I+++ +++ +++ ++ L+     +  TI +G+NG GK+ ILE+IS              
Sbjct: 61  KIRLRNISLYDYKKFSKLKFTSSEKNTTIIIGNNGSGKSTILESISKCLQFLS------- 113

Query: 63  DVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRS------VRCLQINDVVIRVV 113
           D  RI + +   F  +   +  + G   +   LE  +D S           I+  V   +
Sbjct: 114 DNIRIQNNNNYKFQDSEINIHSISGQTIVRCILEIENDFSFSCSLTKNRENISRKVSSEL 173

Query: 114 DELNKHLRISWLVPSMDR------IFSGLSMERRRFL--DRMVFAIDPRHRRRMIDFERL 165
           +E     R+      +D       + +   +ER   L  D  V   + + + +  D    
Sbjct: 174 EEFKALARMYQRSNELDNNTLSYPLLAYYPVERSVTLKRDDAVKYYERK-KAKYSDKSEG 232

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPH 223
           ++      +      SW   I+  + E      I    +E +  LS    +         
Sbjct: 233 LKNAFDGTSNFNDFFSWYKEIDDIINEFKANDSITKEEIEYL--LSKTDNKEKIGSLISQ 290

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
           + L      +   D+ F   +++  ++       D    +    PH  D+ V      I+
Sbjct: 291 L-LEKKNNYNNNEDREFLIRQQKVIQESIKTFVSDIDQVKISRTPHL-DMTVIKNGSEIS 348

Query: 284 IAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           I + S GE+ ++ +       L      + N      I+L+DEI  HL    +  + + +
Sbjct: 349 IFNLSQGEKTLIALVSDIARRLVILNPSLENPLNGYGIVLIDEIDLHLHPKWQQTIVQKL 408

Query: 339 TDI--GSQIFMTG 349
            +     Q  ++ 
Sbjct: 409 ENTFPNIQFILST 421


>gi|78066409|ref|YP_369178.1| hypothetical protein Bcep18194_A4940 [Burkholderia sp. 383]
 gi|77967154|gb|ABB08534.1| hypothetical protein Bcep18194_A4940 [Burkholderia sp. 383]
          Length = 878

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/214 (19%), Positives = 74/214 (34%), Gaps = 25/214 (11%)

Query: 163 ERLMRGRNRLLTEGYFDSSWCSS-------IEAQ--MAELGVKINIA--RVEMINALSSL 211
            RL+     L  +   D    ++       ++A+  +AE+   +  A  + E    L + 
Sbjct: 501 NRLLEQAKAL--DATADEKLKAAMVVERAGLDARRRLAEVKAAVLEAISKHEFCRKLQAC 558

Query: 212 IMEY-VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
           I     +  +    +LS T       D     LK      L    K +S   +T      
Sbjct: 559 INGMETRGISRKSTELSRTTASQELADALNDELKLLKVHHLHVVMKPESPGGKTQF---- 614

Query: 271 SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
             L +         A  S GEQ+ + +  F+A  RL     G    ++LD+  + LD  +
Sbjct: 615 -KLTLQLPGGGTPAAILSEGEQRAIAIASFMAEIRLGKGRGG----IVLDDPVSSLDHRR 669

Query: 331 RNALFRIVT--DIGSQIFMTGTDKSVFDSLNETA 362
           R  +   +    +  Q+ +   D      L + A
Sbjct: 670 RWEVAERLARESLTRQVIVFTHDIYFLLILEQKA 703


>gi|329929594|ref|ZP_08283301.1| chromosome segregation protein SMC [Paenibacillus sp. HGF5]
 gi|328936239|gb|EGG32691.1| chromosome segregation protein SMC [Paenibacillus sp. HGF5]
          Length = 1189

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + ++ F+++A    + F    T  VG NG GK+NI + I ++      +  R   
Sbjct: 1   MFLKRIELAGFKSFADKTEMEFVRGITAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +     +  V       D  + L+  +    R +  + 
Sbjct: 61  MEDIIFAGSDARKAVNYGEVSLTLDNEDHVLPLDFNEVTVTRRVHRSG 108


>gi|242240622|ref|YP_002988803.1| recombination and repair protein [Dickeya dadantii Ech703]
 gi|242132679|gb|ACS86981.1| DNA repair protein RecN [Dickeya dadantii Ech703]
          Length = 553

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 80/272 (29%), Gaps = 33/272 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    ++  G+ G GK+  ++A+      R       A + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQTGMSVITGETGAGKSIAIDALGLCLGNRS-----DASMIR 56

Query: 67  IGSPSFFST-------------FARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  PGAARADICARFALSDTPAALKWLEHNQLDDNNECLLRRVISADGRSRAF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFE---RLM 166
            + EL +HL       +  ++       +R+ LD       +    R+    +    R +
Sbjct: 116 QLRELGQHLIQVHGQHAHQQLLK--PDHQRQLLDAYADDPQLLSAMRQIWQQWHQSCREL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
               + + E             ++ E   +I          +               +  
Sbjct: 174 AQHQQSMFEREARRELLQYQLKELNEFAPQIGEY-----EQIDIEYKRLANSGQLMSLSQ 228

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
                L G  DQ+   +    + +L +   MD
Sbjct: 229 QALQILSGNEDQNILGMLHSASHQLSELISMD 260


>gi|242025206|ref|XP_002433017.1| structural maintenance of chromosome, putative [Pediculus humanus
          corporis]
 gi|212518526|gb|EEB20279.1| structural maintenance of chromosome, putative [Pediculus humanus
          corporis]
          Length = 1052

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
          KI+ L I+ F  +++L + F++      G NG GK+ I+ A+  +  G      R +  +
Sbjct: 25 KIECLQITNFMCHSNLEIKFNSMINFITGRNGSGKSAIMTALIVVLGGTATITGRGSGLS 84

Query: 63 DVTRIGSP 70
          D  + G  
Sbjct: 85 DFIKKGEN 92


>gi|229815222|ref|ZP_04445558.1| hypothetical protein COLINT_02268 [Collinsella intestinalis DSM
           13280]
 gi|229809232|gb|EEP44998.1| hypothetical protein COLINT_02268 [Collinsella intestinalis DSM
           13280]
          Length = 544

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 60/207 (28%), Gaps = 27/207 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + I ++ + +          LV     T+  G+ G GKT +L A+  L   R     +
Sbjct: 1   MIDEIHVENIAL-----IKCADLVPGPGLTVLTGETGAGKTALLSALKLLMGER-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVVDELNK 118
            +   R GS           G        I+     D   R ++++     +R + E   
Sbjct: 51  DSATVREGSDGALVEGRLFSGARDEEGFVIQRRLGSDGRSR-VRVDGSLASVRELSERVS 109

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLD-RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
            L          R+           +D      +       +  +   +   N    E  
Sbjct: 110 PLIDLCGQHEHQRLL--DPASHVGMVDAWAGAGV----AEALAAYRDALARANEAARE-- 161

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEM 204
                   +E      G ++  AR  +
Sbjct: 162 -----LERVEQASRTQGSRLEEARFAL 183


>gi|166365936|ref|YP_001658209.1| hypothetical protein MAE_31950 [Microcystis aeruginosa NIES-843]
 gi|166088309|dbj|BAG03017.1| hypothetical protein MAE_31950 [Microcystis aeruginosa NIES-843]
          Length = 395

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/374 (16%), Positives = 111/374 (29%), Gaps = 58/374 (15%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF-----RR 58
           +I+ L +  +R    L L      T+F+G NG GK+ I +  +FLS     G      RR
Sbjct: 8   RIENLRVQNYRALQDLELKSITPLTVFLGPNGSGKSTIFDVFAFLSECFTVGLKKAWDRR 67

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
             + ++   G   +     +         I+  L   +    R     + +        K
Sbjct: 68  GRFKELRTRGQEGYIIIELKYREKLASPLITYHLAINEAN-NRPYVAEEWLQWRQGAKGK 126

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI--DPRHRRRMIDFERLMRGRNRLLTEG 176
             R          + SG + + +   D  +      P         +     R   L   
Sbjct: 127 PYRFLDFKEGGGIVISGENPKPK---DERISERLDSPEFLAVSTLGQLAKHPRVSALRR- 182

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                               I    +  + A         Q E     +LS TG      
Sbjct: 183 -------------------FITSWYLSYLTA----DNTRTQPEAGAQERLSPTG---DNL 216

Query: 237 DQSFCALKEEYAKKLFD-----GRKMDSMSRRTLIGPHRSDLIVDYCD----KAITIAHG 287
                 LKE++ ++L        R++  + +          L++   D    + I     
Sbjct: 217 PNVIQYLKEDHPQRLESILQTLSRRIPRLEKVEASIMPNGQLLLQIKDAPFQEPILAKFA 276

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI--VTDIGSQI 345
           S G  K+      LA+  ++ + +    +L ++E   HL       L          +Q+
Sbjct: 277 SDGTLKM------LAYLTILYDPS-PPQLLGIEEPENHLHPRLLPELAEECRAATASTQL 329

Query: 346 FMTGTDKSVFDSLN 359
            +T       D L 
Sbjct: 330 MVTTHSPFFVDGLK 343


>gi|187250838|ref|YP_001875320.1| DNA repair ATPase [Elusimicrobium minutum Pei191]
 gi|186970998|gb|ACC97983.1| ATPase involved in DNA repair [Elusimicrobium minutum Pei191]
          Length = 553

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 22/128 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+I  F     + L       +F G+ G GK+ I+EA+ F+   RG   +S   + +
Sbjct: 2   LKNLSIKNFAILDDINLEPAPGLNVFSGETGAGKSIIIEALGFVLGARG--GSS---LIK 56

Query: 67  IGS------PSFFSTF------ARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRV 112
            G+       SF S+F      A+      + +I  +L+ +         IN+  V    
Sbjct: 57  EGAGKMSVSASFDSSFIPKNVAAKYNICGPVINIKRELDIKGKGKG---WINNTVVPAGA 113

Query: 113 VDELNKHL 120
           + EL + L
Sbjct: 114 LAELGEFL 121


>gi|7239255|gb|AAF43149.1|AF225909_1 cohesin subunit [Drosophila melanogaster]
 gi|7159657|emb|CAB76376.1| SMC1 protein [Drosophila melanogaster]
          Length = 1238

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG+P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGNPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|17552844|ref|NP_497771.1| DumPY : shorter than wild-type family member (dpy-27)
           [Caenorhabditis elegans]
 gi|1352297|sp|P48996|DPY27_CAEEL RecName: Full=Chromosome condensation protein dpy-27; AltName:
           Full=Protein dumpy-27
 gi|529385|gb|AAA62647.1| chromosome condensation protein [Caenorhabditis elegans]
 gi|3879216|emb|CAA84669.1| C. elegans protein R13G10.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1469

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
           NR+ I  + +  F++YA   +   F    T+ +G NG GK+N+++A+ F+   +    R 
Sbjct: 89  NRMIILNIYVENFKSYAGKHILGPFHKNLTMILGPNGSGKSNVIDALLFVFGFKAGKIRT 148

Query: 59  ASYADVTRIG 68
              + +   G
Sbjct: 149 KKLSALINSG 158


>gi|119356341|ref|YP_910985.1| chromosome segregation protein SMC [Chlorobium phaeobacteroides
          DSM 266]
 gi|119353690|gb|ABL64561.1| chromosome segregation protein SMC [Chlorobium phaeobacteroides
          DSM 266]
          Length = 1179

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
          + +  + +  F+++A  + + FD   T  VG NG GKTN+++AI   L   +    R   
Sbjct: 1  MYLSKIELFGFKSFAHRVTIKFDKGLTAIVGPNGCGKTNVVDAIRWVLGEQKSSLLRSEK 60

Query: 61 YADVTRIGSPSF 72
            ++   GS + 
Sbjct: 61 MENIIFNGSKNL 72


>gi|326402642|ref|YP_004282723.1| chromosome segregation protein [Acidiphilium multivorum AIU301]
 gi|325049503|dbj|BAJ79841.1| chromosome segregation protein [Acidiphilium multivorum AIU301]
          Length = 1165

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/239 (19%), Positives = 86/239 (35%), Gaps = 30/239 (12%)

Query: 6   KIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           +   L IS F+++A    +      T  +G NG GK+N+++A+ +    +  +  R    
Sbjct: 4   RFARLRISGFKSFADPTTIDILPGLTGIIGPNGCGKSNVVDALRWAMGEASAKSLRGGEM 63

Query: 62  ADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDVV 109
            DV   G     + +       +    GLA +       +++  + +R S    +IN   
Sbjct: 64  EDVIFAGTMARAARNLAEVSITLTDTAGLAPVPFQNEPELQVSRKIERGSGSSYRINGRE 123

Query: 110 IRVVD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
           +R  D      +L    R S ++    +  + +    ERR  L+     I   H      
Sbjct: 124 VRARDVATMFADLASGARNSAMISQGRVSALVNARPDERRALLE-EAAGITGLHA---RR 179

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-RVEMINALSSLIMEYVQKE 219
            E  ++ R         D    +  EA++AEL  +   A R   I+ L           
Sbjct: 180 HEAELKLRAAEQNLLRAD-DLRAQQEARLAELRKQARQANRYRNISGLIRDAEAEYLAI 237


>gi|292670722|ref|ZP_06604148.1| DNA repair protein RecN [Selenomonas noxia ATCC 43541]
 gi|292647668|gb|EFF65640.1| DNA repair protein RecN [Selenomonas noxia ATCC 43541]
          Length = 572

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 79/249 (31%), Gaps = 39/249 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     + + F +   I  G+ G GK+ +++AI  +   R       +D+ R
Sbjct: 2   LHSLRVWNFALLEEVAVEFGSGLNILTGETGAGKSILIDAIGAILGQR-----ISSDMIR 56

Query: 67  IGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVV 113
            G   F    A             +E  E   D  + +  +  R  +  + +N   +  +
Sbjct: 57  SGCD-FLRVEAVFSVDERDEMLPLLEEQEIEYDDELIIIRKVSRIGKSSILVNGSHV-TL 114

Query: 114 DELNKH-LRISWLVPSMDRIFSGLSMERRRFL---DRMVFAIDPRH---RRRMIDFERLM 166
             L K  L +  +    + +       +R+ L   DR + A    +        +  RL 
Sbjct: 115 SFLKKIALHLVDIHGQNENLALLHEDTQRQLLEGGDRDLSACLAEYQKVYGVWKEKSRLR 174

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMA----------ELGVKINIARVEMINALSSLIMEYV 216
             R   +             E ++A          EL  +I   R+     L+    E  
Sbjct: 175 TERAEEIEGISERLDMLRWQEREIAEAELREGEDEELAAEI--RRLSHSEKLAEHAAEAH 232

Query: 217 QKENFPHIK 225
              +    +
Sbjct: 233 DLLSEDSAE 241


>gi|312198966|ref|YP_004019027.1| hypothetical protein FraEuI1c_5168 [Frankia sp. EuI1c]
 gi|311230302|gb|ADP83157.1| hypothetical protein FraEuI1c_5168 [Frankia sp. EuI1c]
          Length = 435

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          ++++ + +S FR+   L L      T+  G N  GK+N+L  ++FL 
Sbjct: 1  MRLEKVRLSGFRSLRDLTLELGD-LTVITGPNNAGKSNLLAGLAFLG 46


>gi|146303902|ref|YP_001191218.1| hypothetical protein Msed_1132 [Metallosphaera sedula DSM 5348]
 gi|145702152|gb|ABP95294.1| hypothetical protein Msed_1132 [Metallosphaera sedula DSM 5348]
          Length = 358

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + L +  FR + SL L  + +  + VG N VGKT ILEA +  +
Sbjct: 2  EKLVLKNFRRFRSLELELN-KINVIVGKNNVGKTTILEAFALAA 44


>gi|110680522|ref|YP_683529.1| DNA repair protein RecN [Roseobacter denitrificans OCh 114]
 gi|109456638|gb|ABG32843.1| DNA repair protein RecN [Roseobacter denitrificans OCh 114]
          Length = 575

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I        L L F+    +  G+ G GK+ +L+A+ F+   RG      AD+ R
Sbjct: 28  LRGLDIQNMLIIDRLELAFEPGLNVLTGETGAGKSILLDALGFVLGWRG-----RADLVR 82

Query: 67  IGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRV 112
            G+     T     G +  A  I  +        +   +IN    R 
Sbjct: 83  QGAEQGEVTAWFDLGADHPAHAILQEAGLPAGDELLLRRINMQDGRK 129


>gi|301299441|ref|ZP_07205720.1| RecF/RecN/SMC N-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852977|gb|EFK80582.1| RecF/RecN/SMC N-terminal domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 433

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/284 (17%), Positives = 101/284 (35%), Gaps = 43/284 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +KI  L I   +   +++  F     T+  G+N  GKT+IL+AI++   G  ++ +    
Sbjct: 3   MKINKLEIENVKRVKAVKAEFTPNGLTVIGGNNNQGKTSILDAIAWALGGNKYKPSQAQ- 61

Query: 64  VTRIGS-----PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
             R GS              +    G       ++    +  + L +ND V  +   L K
Sbjct: 62  --RQGSVTPPHLHVVMNNGLIVERSGKNSTLKVIDPNGKKGGQQL-LNDFVEELAINLPK 118

Query: 119 ------------HLRISWLVPSMDRI--FSGLSMERRRFLDRMV-----FAIDPRHR--- 156
                        L+I  + P +  +    G     RR + ++      FA + ++    
Sbjct: 119 FMESTSKEKANTLLQIIGVGPKLQELEMKEGELYNERRTIGQIADQKKKFAEEQKYYPDA 178

Query: 157 -RRMIDFERLMRGRNRLLTE---GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
              ++    L++ +  +L              S+E Q      K++    +++  L    
Sbjct: 179 PHELVPVNELVKQQQDILARNGENQRKRDNLKSLEEQHTFQARKVS----QLMEELEKEQ 234

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            +    E    + ++    L+ K D+S   L+   A+     RK
Sbjct: 235 AKL--AELTEDVNVAKKSVLELK-DESTEELERNLAEIDETNRK 275


>gi|254569324|ref|XP_002491772.1| Subunit of the condensin complex, which reorganizes chromosomes
           during cell division [Pichia pastoris GS115]
 gi|238031569|emb|CAY69492.1| Subunit of the condensin complex, which reorganizes chromosomes
           during cell division [Pichia pastoris GS115]
          Length = 1428

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
           T R+ I  L ++ F++YA  +    F+   +  VG NG GK+N+++A+ F+   R    R
Sbjct: 229 TPRLVIDKLVLTNFKSYAGKQTIGPFNPSFSAIVGPNGSGKSNVIDALLFVFGFRATKMR 288

Query: 58  RASYADVTRIGSPSF 72
           ++   ++    S  F
Sbjct: 289 QSKIKELI-HNSEEF 302


>gi|212545659|ref|XP_002152983.1| nuclear condensin complex subunit Smc4, putative [Penicillium
           marneffei ATCC 18224]
 gi|210064503|gb|EEA18598.1| nuclear condensin complex subunit Smc4, putative [Penicillium
           marneffei ATCC 18224]
          Length = 1464

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
             R+ I  L ++ F++YA  ++   F    +  VG NG GK+N+++++ F+    GFR +
Sbjct: 246 HARMVITHLVLTNFKSYAGKQIVGPFHVSFSSVVGPNGSGKSNVIDSLLFVF---GFRAS 302

Query: 60  SYAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                    +    +     TF  VE      
Sbjct: 303 KMRQGKISALIHNSARFPDLTFCEVEVHFQEI 334


>gi|171778670|ref|ZP_02919766.1| hypothetical protein STRINF_00618 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282627|gb|EDT48051.1| hypothetical protein STRINF_00618 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 552

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 85/272 (31%), Gaps = 25/272 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLTFENGMTVLTGETGAGKSIIIDAMNLMLGAR-----ASLDVIR 56

Query: 67  I-------------GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
                         G  +  +      G+E   ++ I+ E          +IN  ++   
Sbjct: 57  HGANKAEIEGLFSVGENAALTQILEENGIEVTEELIIRREI-LQNGRSIGRINGQMVNLT 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            +  + ++L         + +       R    F D    ++   ++     + RL +  
Sbjct: 116 TLRAVGQYLVDIHGQHDQEELMKPNMHIRMLDEFGDSQFASVKKHYQDLFEHYRRLRKRV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINI--ARVEMINALSSLIMEYVQKENFPHIKLS 227
                      +    +E Q+AE+            +      L+      +   +  + 
Sbjct: 176 LTKQKNEQEHKARIEMLEFQIAEIEAAALKSGEDQALNQKRDKLLNHKHIADTLTNAYVM 235

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
           L             A+ +    + FD    D 
Sbjct: 236 LDDEEFSSLSNIRSAMNDLMTLEEFDAEYKDM 267


>gi|20807161|ref|NP_622332.1| ATP-dependent endonuclease [Thermoanaerobacter tengcongensis MB4]
 gi|20515659|gb|AAM23936.1| predicted ATP-dependent endonuclease of the OLD family
           [Thermoanaerobacter tengcongensis MB4]
          Length = 575

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK + I  FR+   LR+     + + +G N  GKTNIL A+             Y D 
Sbjct: 1   MKIKSMEIHNFRSIKDLRVDLYD-YDVLIGANNSGKTNILTALRIF----------YEDG 49

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            +    + F  F   +  E   +I   L   + ++++    N
Sbjct: 50  IKFNEATDFPKF-HTDDEESWIEIEYVLTDEEFKNLKDEYKN 90


>gi|289618530|emb|CBI55254.1| putative SMC3 protein [Sordaria macrospora]
          Length = 1199

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 98/335 (29%), Gaps = 56/335 (16%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI------SFLSPGRGF 56
           + IK + I  F++Y    +   F A   + VG NG GK+N   AI      ++ +  R  
Sbjct: 1   MHIKQIIIQGFKSYKEQTVIEPFSAGTNVIVGRNGSGKSNFFAAIRFVLSDAYTNMSREE 60

Query: 57  RRASYADVTRIGSPSFF------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           R+A    +   GS S          F   +         + +            ++  V 
Sbjct: 61  RQA----LLHEGSGSAVMSAYVEIIFDNTDKRFSEPGDEVVIRRTIGLKKDEYSVDKKVQ 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSM---------ERRRFLDRMVFAIDPRHRRRMID 161
              D L       +   +   I     +         ER   L  +       +  R I 
Sbjct: 117 TRADVLKILETAGFAKENPFYIVPQGRVAAITNMKENERLNLLKEIAGT--NLYDDRRIQ 174

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV------------------- 202
             ++M   N        D      I+ +++EL  + +  R                    
Sbjct: 175 SLKIMAETNN--KREKIDE-LLEYIKERLSELEEEKDELRDFQEKDRERRCLEYAHWHRL 231

Query: 203 -----EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
                  +  +  +             +L  T       D  F  LK+       + R++
Sbjct: 232 QETNNNTLEQIEEVRQGGAGATTKDRGQLQKTEKEIAALDHKFQELKQTLELLAIERRQL 291

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           D   + T     ++++ + + D+       +  +Q
Sbjct: 292 DEDRKDTARSQAKAEMKLKHLDETRHSREKAQQQQ 326



 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 87/264 (32%), Gaps = 25/264 (9%)

Query: 91   KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
            KLE       R LQ          E  K++R   ++P  +       M+  + ++  +  
Sbjct: 912  KLEKNSQTKARLLQ-------QAAEYAKNIRDLGILPE-EAFGKYEKMKSEQAINEALKK 963

Query: 151  IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
                +++    +      R +LL       +   SIE  +  L    + A       +S 
Sbjct: 964  YKHINKKAFDQYNNFTTQREQLLKRRKELDTSQKSIEELIQHLDHAKDEAIERTFKQVSR 1023

Query: 211  LIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
                  +K     H +L +     G  +++     E+             +   + +G  
Sbjct: 1024 EFSTIFEKLVPAGHGRLVIQRKAAGSKNRNAEDSDED------ASGGAKGVESYSGVGIS 1077

Query: 270  RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
             S       D+   I   S G++ +  + +  A           +P ++ DE+ A+LD  
Sbjct: 1078 VS-FNSKVMDEQQKIQQLSGGQKSLCALCLIFAL-----QAAESSPFVIFDEVDANLDAQ 1131

Query: 330  KRNALFRIVTDI----GSQIFMTG 349
             R A+  ++  I     +Q   T 
Sbjct: 1132 YRTAVAALLDSISKTQKTQFICTT 1155


>gi|261408032|ref|YP_003244273.1| chromosome segregation protein SMC [Paenibacillus sp. Y412MC10]
 gi|261284495|gb|ACX66466.1| chromosome segregation protein SMC [Paenibacillus sp. Y412MC10]
          Length = 1189

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + ++ F+++A    + F    T  VG NG GK+NI + I ++      +  R   
Sbjct: 1   MFLKRIELAGFKSFADKTEMEFVRGITAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
             D+   GS +     +  V       D  + L+  +    R +  + 
Sbjct: 61  MEDIIFAGSDARKAVNYGEVSLTLDNEDHVLPLDFNEVTVTRRVHRSG 108


>gi|15672785|ref|NP_266959.1| chromosome segregation SMC protein [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12723724|gb|AAK04901.1|AE006313_8 chromosome segregation SMC protein [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 924

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 25/165 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + I  F+++A   ++ FD   T  VG NG GK+NI+EA+ ++      +  R   
Sbjct: 1   MYLKKMEIVGFKSFADKTKVEFDKGITAVVGPNGSGKSNIVEALRWVLGEQSAKALRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFAR-------VEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G+      ++    A        ++G +   ++ I              +N  
Sbjct: 61  MPDVIFAGTEKRRALNYAEVIAHFDNSDHYLQGQDENEEVVITRRLY-RNGDSEFLMNGR 119

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
             R+ D         L +          ++ +F+    ERR   +
Sbjct: 120 KCRLRDIHDLFTDTGLGRDSLSIISQGRIESVFNSKPEERRAIFE 164


>gi|304411947|ref|ZP_07393558.1| chromosome segregation protein SMC [Shewanella baltica OS183]
 gi|307303285|ref|ZP_07583040.1| chromosome segregation protein SMC [Shewanella baltica BA175]
 gi|304349807|gb|EFM14214.1| chromosome segregation protein SMC [Shewanella baltica OS183]
 gi|306913645|gb|EFN44067.1| chromosome segregation protein SMC [Shewanella baltica BA175]
          Length = 1169

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 32/229 (13%)

Query: 1   MTNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGF 56
           +T  +++K + ++ F+++    ++ F    T  +G NG GK+N+++A+ ++   S  +  
Sbjct: 28  LTGTMRLKQIKLAGFKSFVDPTKIPFLQALTAIIGPNGCGKSNVIDAVRWVLGESSAKHL 87

Query: 57  RRASYADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDR-SVRCL 103
           R  S ADV   GS +            F +   R+ G     +  I ++ +  R      
Sbjct: 88  RGDSMADVIFNGSSARKPVSVAGVELIFENKDGRLAGQYASYE-EIAVKRQVSRDGESWY 146

Query: 104 QINDVVIRVVDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPR 154
            +N    R  D +      + L P            R+      + R F++        R
Sbjct: 147 FLNGQKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAG--ISR 203

Query: 155 HRRRMIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
           ++ R  +   R+   R  L   G   S     ++ ++A+        R 
Sbjct: 204 YKERRRETENRIRHTRENLERLGDIRSELGKQLD-KLAQQAKAAKQYRE 251



 Score = 39.5 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 33/178 (18%)

Query: 197  INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            ++  R +++  L ++ +  +++      + S     D   ++    L+E   K   + R 
Sbjct: 955  LDQIRQKIV-RLGAINLAAIEEFEQQSERKSYLDHQDDDLNKGLATLEEAIRKIDKETRS 1013

Query: 257  M----------DSMS--------RRTLIGPHRSDLIVDY--------CDKAITIAHGSTG 290
                       D            R  +     DL+             K  TI   S G
Sbjct: 1014 RFKTTFDSVNEDLGRLFPKVFGGGRAYLALTDDDLLETGVTIMAQPPGKKNSTIHLLSGG 1073

Query: 291  EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FM 347
            E+ +  + +  A  RL       AP  +LDE+ A LD+       R++ ++   + F+
Sbjct: 1074 EKALTALSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVERFCRLLKEMSQSVQFI 1126


>gi|302385769|ref|YP_003821591.1| SMC domain protein [Clostridium saccharolyticum WM1]
 gi|302196397|gb|ADL03968.1| SMC domain protein [Clostridium saccharolyticum WM1]
          Length = 424

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +KI  L I   +   ++++   A   TI  G N  GKT++L++I+++  G  FR +    
Sbjct: 3  MKINQLEIENVKRIKAVKIEPSANGLTIIGGRNNQGKTSVLDSIAWVLGGDKFRPSQAQR 62


>gi|170109175|ref|XP_001885795.1| condensin complex subunit SMC1 [Laccaria bicolor S238N-H82]
 gi|164639375|gb|EDR03647.1| condensin complex subunit SMC1 [Laccaria bicolor S238N-H82]
          Length = 1243

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          + +  + + +F++Y     +      T  +G NG GK+N+++AISF+   +    R +  
Sbjct: 1  MPLVRIEVCDFKSYRGHQTIGPFRTFTSVIGPNGAGKSNLMDAISFVLGVKSAQLRSSQL 60

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 61 KDLVYRG 67


>gi|39940504|ref|XP_359789.1| hypothetical protein MGG_04988 [Magnaporthe oryzae 70-15]
 gi|145010772|gb|EDJ95428.1| hypothetical protein MGG_04988 [Magnaporthe oryzae 70-15]
          Length = 1204

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F     + VG NG GK+N   AI F
Sbjct: 1  MYIKQIIIQGFKSYKEQTVIEPFSPGTNVIVGRNGSGKSNFFAAIRF 47



 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 102/282 (36%), Gaps = 25/282 (8%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
            +    +   +++ ++E    +  + L    ++   + E  K++R   ++P          
Sbjct: 896  KAHREQEQQELAREIEKMQKKLEKGLSKKAIIANKLAEFTKNIRDLGVLPEEAFDKYESM 955

Query: 138  M-----ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
                  +R   ++  +      +++    +      + +L+       S   SIE  ++ 
Sbjct: 956  EMKSIEKRLSKVNEALKKYKHVNKKAFEQYNSFTTQQEQLVKRRKELDSSQQSIEDLISH 1015

Query: 193  LGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
            L  K + A       +S       ++     H +L +         Q     ++  A++ 
Sbjct: 1016 LDQKKDEAIERTFKQVSREFATIFERLVPAGHGRLVI---------QRRADRRQTAAEES 1066

Query: 252  FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
             D ++  ++   T +G   S       D+   I   S G++ +  + +  A        T
Sbjct: 1067 EDDQRRGTIENYTGVGISVS-FNSKEFDEQQKIQQLSGGQKSLCALCLIFA-----IQQT 1120

Query: 312  GFAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
              +P+++ DE+ A+LD   R A+  ++     + G+Q   T 
Sbjct: 1121 ESSPMVVFDEVDANLDAQYRTAVASLLQSISSEAGTQFICTT 1162


>gi|71894686|ref|YP_278794.1| putative ABC transporter ATP-binding protein P115-like [Mycoplasma
           synoviae 53]
 gi|71851474|gb|AAZ44083.1| putative ABC transporter ATP-binding protein P115-like protein
           [Mycoplasma synoviae 53]
          Length = 980

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 14/119 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           +K+  +    F+++A  + L FD      +G NG GK+NI +AI   L        R  S
Sbjct: 1   MKLIKIEAHGFKSFADPISLKFDGGVIAIIGPNGSGKSNINDAIKWVLGEQSSKELRGNS 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLAD---------ISIKLETRDDRSVRCLQINDVV 109
            +DV   GS +     FA V       D         I+I  +    ++V    +N   
Sbjct: 61  MSDVIFSGSKTAKAMDFAYVTLTFDNKDRFSSIDRDYITITRKITRAKNVNEYYLNGEP 119


>gi|323440108|gb|EGA97823.1| hypothetical protein SAO11_1244 [Staphylococcus aureus O11]
 gi|323442782|gb|EGB00408.1| hypothetical protein SAO46_1345 [Staphylococcus aureus O46]
          Length = 514

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 65/178 (36%), Gaps = 7/178 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  + I  F+ +  L L F+   ++ VG+N VGK+ IL AI  +     F   + +  
Sbjct: 1   MSLSKIIIKGFKKFKCLELDFNEHFSVLVGENEVGKSTILSAIDIVLNQAVFLPGNTS-Y 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R  +      F      E L  I I+L       ++    + +     + +   +R  +
Sbjct: 60  QRYFNSDLVEKFFETRTKESLPKIEIELFLHLSNDLKNSNFSGLHYNDSEGIKTGIRFVY 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE-RLMRGRNRLLTEGYFDSS 181
                        +  + F D  +   D  ++     F+ +  + R   L   Y D+S
Sbjct: 120 EFDEDFI----SDVNFKEFADNKIIPTD-YYKASWNTFQGKSYKKRMTPLKMIYLDNS 172


>gi|28958118|gb|AAH47324.1| Structural maintenance of chromosomes 3 [Homo sapiens]
          Length = 1217

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 89/278 (32%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N+  AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNLFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 908  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 965

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 966  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1025

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1026 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQS 1085

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1086 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1135

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1136 PAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 1182


>gi|209877749|ref|XP_002140316.1| structural maintenance of chromosomes protein [Cryptosporidium
           muris RN66]
 gi|209555922|gb|EEA05967.1| structural maintenance of chromosomes protein, putative
           [Cryptosporidium muris RN66]
          Length = 1231

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + I+ + +  F++Y    +   F        G NG GK+NIL++I F   ++     R  
Sbjct: 1   MYIEEIILDGFKSYQRRTVVGKFHPCFNAITGLNGSGKSNILDSICFVLGITNLSQIRIN 60

Query: 60  SYADVT-RIGSPSFFSTFARVEGMEGLAD-----------ISIKLETRDDRSVRCLQIND 107
              ++  + G          +                   I++  +       R L IN 
Sbjct: 61  KLEELVYKAGQAGINKASVSIVFNNNNKSNSSPLYKDYEKITVTRQIATGGRNRYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
           +V++  D  N    +   V S   +    
Sbjct: 120 LVVKPSDVTNFFHSVQLNVNSSHFLIMQG 148


>gi|156084430|ref|XP_001609698.1| smc family/structural maintenance of chromosome [Babesia bovis]
 gi|154796950|gb|EDO06130.1| smc family/structural maintenance of chromosome [Babesia bovis]
          Length = 1213

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 49/142 (34%), Gaps = 19/142 (13%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRA 59
           + I+ + +  F++Y++  +    D       G NG GK+N+L+++ F    +     R  
Sbjct: 1   MHIESIILDGFKSYSTRTVIGPLDPHFNAVTGLNGSGKSNVLDSLCFCLGIADLSCVRAN 60

Query: 60  SYADVT-RIGSPSFFSTFARV------------EGMEGLADISIKLETRDDRSVRCLQIN 106
              D+  + G          V            +    + +++I  +       R     
Sbjct: 61  KLDDLIYKQGQAGITKATVTVVLNNRRQPSPLPDAYRKMPEVTITRQIALGGRNRYFLNG 120

Query: 107 D-VVIRVVDELNKHLRISWLVP 127
                + + E  +  R++   P
Sbjct: 121 HPSTPKAIAEFFQCARMNVNNP 142


>gi|118497707|ref|YP_898757.1| ATP binding protein [Francisella tularensis subsp. novicida U112]
 gi|194323679|ref|ZP_03057455.1| hypothetical protein FTE_0514 [Francisella tularensis subsp.
           novicida FTE]
 gi|118423613|gb|ABK90003.1| ATP binding protein [Francisella novicida U112]
 gi|194322043|gb|EDX19525.1| hypothetical protein FTE_0514 [Francisella tularensis subsp.
           novicida FTE]
          Length = 388

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 8/136 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I+ +R+   L +    +  I  G N  GK+N+ +A+  L+        +   V  
Sbjct: 2   LKTLAINHYRSLFDLVIPL-KKLNIITGVNASGKSNLYKALRLLAET------ADGGVIH 54

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +           G E ++   IK E     + +   +  + +   D+L  +       
Sbjct: 55  SLAKEGGLNTTFWAGPEKISRQMIKGEVAIQGNSKQN-VARIRLGFADDLFGYSISLGYP 113

Query: 127 PSMDRIFSGLSMERRR 142
                 FS     +R 
Sbjct: 114 EPSLSAFSLDPEIKRE 129


>gi|328954178|ref|YP_004371512.1| DNA repair protein RecN [Desulfobacca acetoxidans DSM 11109]
 gi|328454502|gb|AEB10331.1| DNA repair protein RecN [Desulfobacca acetoxidans DSM 11109]
          Length = 571

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 32/198 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++IK L I +      + L+ +    +F G+ G GK+ +++A+  L   +G     
Sbjct: 1   MLVELRIKNLAILD-----QVELLLEPGFNVFTGETGAGKSMLVQAVHLLLGAKG----- 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDVVIRVVDELNK 118
             D+ R G+P      AR E +      S   + E      +   ++     R    LN 
Sbjct: 51  SEDLIRTGAPEA-EVEARFEIVSKEPWTSWLAERELPFANELLLRRVVSRSGRSRSYLND 109

Query: 119 HLRIS-WLVPSMDRIFSGL----------SMERRRFLDRMVFAID-----PRHRRRMIDF 162
                 +L  S   + +                   LD      D               
Sbjct: 110 QAATLKFLAASAQELINLSGQHEHQTFLAPENHLHILDSFAGLTDFADDFRAAYHHWRQL 169

Query: 163 ERL---MRGRNRLLTEGY 177
           E+    ++ R   L    
Sbjct: 170 EKSWQQLQQRQCSLENSK 187


>gi|296116300|ref|ZP_06834916.1| chromosome partition protein SMC [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977119|gb|EFG83881.1| chromosome partition protein SMC [Gluconacetobacter hansenii ATCC
           23769]
          Length = 1518

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 26/165 (15%)

Query: 6   KIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           +   L I+ F+++A    +      T  VG NG GK+N++EA+ +    +  R  R    
Sbjct: 4   RFARLRIAGFKSFADPASIEILPGLTGIVGPNGCGKSNVVEALRWTMGETSARSLRGGEM 63

Query: 62  ADVTRIGSPS-----FFSTFARVEGM--------EGLADISIKLETRDDRSVRCLQINDV 108
            D+   G+ +            +EG         +G  ++ + +   +  +    +IN  
Sbjct: 64  DDLIFAGTAARPARNTAEVTLSLEGTADVAPPPFQGQDELQV-VRRAERGAGSGYRINGK 122

Query: 109 VIRVVD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLD 145
            +R  D      +L    R S +V    +  + +    ERR  L+
Sbjct: 123 SMRARDVQTLFADLASGARSSAMVSQGRVSALVNARPEERRSILE 167


>gi|258507445|ref|YP_003170196.1| hypothetical protein LGG_00450 [Lactobacillus rhamnosus GG]
 gi|257147372|emb|CAR86345.1| Putative protein without homology [Lactobacillus rhamnosus GG]
 gi|259648799|dbj|BAI40961.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
          Length = 696

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/403 (16%), Positives = 131/403 (32%), Gaps = 74/403 (18%)

Query: 5   IKIKFLNISEFRNYAS-------LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-F 56
           + +K + + +FR + S       L + F     I VG+N  GKT +++AI  L       
Sbjct: 1   MFLKTVKLYDFRKFVSQVNGEPGLIVKFHPGLNIIVGENDSGKTAVIDAIKVLLGTVSDD 60

Query: 57  RRA-SYADVTRIGSP---SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           R +    D    G+     F          +  A   ++  + DD +   L +   V R 
Sbjct: 61  RTSIQDEDFYFDGTEFSNDFKIEAVFCSLNKYEAGTFLEWLSFDDNNEYELHVKLTVERK 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
             E  +             + +G         +  + +    + R    + + +R     
Sbjct: 121 TSEAGRQYL-------DRNLVAGDEG-----AESSLASGARVYLRV--TYLKALRNATDE 166

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKIN--IARVEMINALSS--LIMEYVQKENFPHI---- 224
           LT G+      S +   +A      N    +++++ AL     I+E    + FP      
Sbjct: 167 LTPGFR-----SHLPQLLAAHSEFRNHPEHKLKLVQALEEANAIIEGYLSDGFPSESNPP 221

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD-------- 276
           K +     +    QS         ++LFD +  D    R  +     D I          
Sbjct: 222 KDNDHLSDNNLEKQSINKELHSVLRQLFDSQDQDKSDTRFQLTQVTLDQIFKQLSLSSES 281

Query: 277 --YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF----APILLLDEISAHLDEDK 330
                  + + + ST                L+ + +        I+L++E+ AHL    
Sbjct: 282 VNLGLGNLNLLYIST-------------ELALLKDHSSSVVYGPNIMLIEELEAHLHVQA 328

Query: 331 RNALFRIVT--------DIGSQIFMTGTDKSVFDSLNETAKFM 365
           +  L + +         +   Q  +T    ++  S+++ +   
Sbjct: 329 QIRLIKYIERYILSTEDNSSQQFILTSHSVALTASIDQRSLIY 371


>gi|281211498|gb|EFA85660.1| structural maintenance of chromosome protein [Polysphondylium
          pallidum PN500]
          Length = 1415

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 7  IKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I  F++Y  L L    F     +  G NG GK+N+  AI F+
Sbjct: 4  IKLIKIEGFKSYQHLDLASNTFSPGFNVITGRNGAGKSNLFSAIRFM 50



 Score = 40.3 bits (93), Expect = 0.50,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 76/219 (34%), Gaps = 16/219 (7%)

Query: 134  SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               + E+ R ++  +     R+ +    ++  +  RN L +          +I   +  +
Sbjct: 965  KKQANEQLRQVNAEIKQYTARNLKADEQYKSALEVRNGLQSRKAELDESVKAITNLILTM 1024

Query: 194  GVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
              K + A     + +     +  ++     H  L +    D   D+     + +    L 
Sbjct: 1025 DAKKDEAIARTFSGVGKHFSDIFREMIPGGHANLIIKRKFDND-DEGEEPNEWDQNGVLH 1083

Query: 253  DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
                M+     T IG     +      +  T+   S G++ +V + +  A        T 
Sbjct: 1084 KPDDME----YTGIGI---RVSFGEGHQTHTMKQLSGGQKTLVALTLIFAL-----QRTD 1131

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTD--IGSQIFMTG 349
             AP  LLDEI A LD   R A+ +I+      +Q   T 
Sbjct: 1132 PAPFYLLDEIDAALDHTYRVAISKIIRKHAKFTQFIATT 1170


>gi|221632486|ref|YP_002521707.1| DNA repair protein RecN [Thermomicrobium roseum DSM 5159]
 gi|221156123|gb|ACM05250.1| DNA repair protein RecN [Thermomicrobium roseum DSM 5159]
          Length = 580

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 90/297 (30%), Gaps = 71/297 (23%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I        ++L F    T   G+ G GK+ +++A+  +   R     + +D+ R
Sbjct: 2   LLQLTIRNIAIIREVQLEFGPGLTALTGETGAGKSILIDALGLVLGAR-----ASSDLVR 56

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRD---------------DRSVRCLQINDVVI 110
            G+P ++      + G+E   D+   L                          ++N   I
Sbjct: 57  SGTPRAWVEAIFDLTGLEQATDLQAMLSAHGIDLEDGQLILSREIQANGRSVARVNGQAI 116

Query: 111 ----------------------------RVVDELNKHLRISWLVPSMDRIFSGLSMERRR 142
                                       R ++ L++   +  L   + R+       RR 
Sbjct: 117 PASVLAVLGARLVDIHGQSDHLSLLRADRQLELLDRFAGVLPLRNELARLVREFRAVRRE 176

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
                +   +  HRR ++ ++           +    +      E ++         AR+
Sbjct: 177 LEQLRMRTREREHRRDLLRYQ----------VDEIARARLRVGEEEELVA-----ERARL 221

Query: 203 EMINALSSLIMEYVQKENFPHI-------KLSLTGFLDGKFDQSFCALKEEYAKKLF 252
           +    L+SL  E     +           +  L     G+ D     L E+  + L+
Sbjct: 222 QNAERLASLATEVASSLDGDEFAPLDALRRAVLRLEELGRLDPEQRGLAEQLREALY 278


>gi|195400084|ref|XP_002058648.1| GJ14197 [Drosophila virilis]
 gi|194142208|gb|EDW58616.1| GJ14197 [Drosophila virilis]
          Length = 1240

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++F+ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LQFIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   +  ++G   +  +       S    +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVARSCYVTAKFILDGEKHMDFQRAVISGSSE--YRINGESVSSNTYLNKL 144


>gi|330817363|ref|YP_004361068.1| hypothetical protein bgla_1g24880 [Burkholderia gladioli BSR3]
 gi|327369756|gb|AEA61112.1| hypothetical protein bgla_1g24880 [Burkholderia gladioli BSR3]
          Length = 610

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +++  L I  FR      L F   HT+ +G N VGK+ I EA+  
Sbjct: 1  MRVSRLQIENFRGIKKAELHFS-GHTLLIGGNNVGKSTICEALDL 44


>gi|325269043|ref|ZP_08135664.1| DNA repair protein RecN [Prevotella multiformis DSM 16608]
 gi|324988664|gb|EGC20626.1| DNA repair protein RecN [Prevotella multiformis DSM 16608]
          Length = 555

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 58/385 (15%), Positives = 122/385 (31%), Gaps = 64/385 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  F     L + F    ++  G+ G GK+ IL AI  L   R     + + + +
Sbjct: 2   LKHLYIKNFTLIDQLDIEFRPGFSVITGETGAGKSIILGAIGLLLGNR-----ADSKLIK 56

Query: 67  IGS------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
            G                F  F     ++   + +I              IND  + +  
Sbjct: 57  QGEKKCTIEAHFDLSNYGFEAFFEAHDIDFEPEDTIIRRELTATGKSRAFINDTPVSLQM 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDFERLMRGRNRL 172
                 ++  +      +       +   +D +         ++     ++   +     
Sbjct: 117 MRTLGEQLIDIHSQHQNLLLQKDDFQLNVVDIIAQDSTELAAYQTAFQCYKNAEKQ---- 172

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                      S ++ Q+A         R +    L S  +   ++E       +L+   
Sbjct: 173 ----------LSELKEQIARAQENEEFMRFQF-GELDSAGLTEGRQEELEQESETLSHAE 221

Query: 233 DGK--FDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           D K  F ++   L E+    L   GR ++S+     + P   +L+               
Sbjct: 222 DIKTSFYEADSLLNEDDNGILSRLGRSLESLGNIENVYPKAQELV--------------- 266

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
             Q++  V I L    +    +G +   L+D   + LD   +      +  +  Q F   
Sbjct: 267 --QRLSSVHIEL--KDIAEEISGESG--LIDFDPSRLDSINQQ--LDQLNALE-QKFHVS 317

Query: 350 TDKSVF---DSLNETAKFMRISNHQ 371
           T++ +    D + +  K +  S+ +
Sbjct: 318 TERELIGIRDEMEKQLKNIEHSDEE 342


>gi|260773716|ref|ZP_05882631.1| ATP-dependent endonuclease [Vibrio metschnikovii CIP 69.14]
 gi|260610677|gb|EEX35881.1| ATP-dependent endonuclease [Vibrio metschnikovii CIP 69.14]
          Length = 543

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 9/112 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + IS FR    L L FD   T  +G+N  GK+++L+A+S + P            
Sbjct: 1   MHLERIEISGFRGIRRLSLAFDE-LTTLIGENTWGKSSLLDALSIMLPA-------DGRP 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDE 115
            +     F   ++          I +   T + R  R  +      +   DE
Sbjct: 53  YQFELQDFHVDYSVSHPQTQDIQIILSFVTTEPREHRAGRYRKLKPVWRQDE 104


>gi|167628543|ref|YP_001679042.1| hypothetical protein HM1_0414 [Heliobacterium modesticaldum Ice1]
 gi|167591283|gb|ABZ83031.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 339

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 23/98 (23%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
             L    F  + SL L F     +F+G NG GKT++++ +                    
Sbjct: 5   TRLQAENFSAFESLDLSFSPGINVFIGKNGTGKTHVMKTLY------------------- 45

Query: 68  GSPSFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQ 104
              +  +   R+EG ++ +  I +  E R  R VR  +
Sbjct: 46  ---AAGAITGRLEGFIDKMIRIFLPYEYRIGRLVRRKR 80


>gi|190576910|ref|YP_001966242.1| putative RecF protein [Klebsiella pneumoniae]
 gi|110264494|gb|ABG56857.1| putative RecF protein [Klebsiella pneumoniae]
          Length = 252

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
            RI I+++ I  FR+   + L       I  G NG GK+NI  AI  L+
Sbjct: 11 AGRIMIQYIRIQNFRSVKDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 59


>gi|157111275|ref|XP_001651465.1| structural maintenance of chromosomes smc1 [Aedes aegypti]
 gi|108878459|gb|EAT42684.1| structural maintenance of chromosomes smc1 [Aedes aegypti]
          Length = 1227

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63
          ++F+ +  F++Y   + +    + +  +G NG GK+N ++AISF+   +    R     +
Sbjct: 6  LQFIEVDNFKSYRGKVTIGPLKKFSAVIGPNGSGKSNFMDAISFVMGEKTTSLRVRKLNE 65

Query: 64 VTR 66
          +  
Sbjct: 66 LIH 68


>gi|270292611|ref|ZP_06198822.1| DNA repair protein RecN [Streptococcus sp. M143]
 gi|270278590|gb|EFA24436.1| DNA repair protein RecN [Streptococcus sp. M143]
          Length = 555

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 77/208 (37%), Gaps = 25/208 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RSV  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRSLQELFEEQGLELGDEIIIRREILQNGRSVSRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL    +    D+               F D     +   ++     + ++ + 
Sbjct: 117 LRAIGQHL--VDIHGQHDQEELMRPQLHIQMLDEFGDAAFLDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVK 196
              +        S    +E QMAE+   
Sbjct: 175 VLEVKKNQQEHKSRIEMLEFQMAEIEAA 202


>gi|134113643|ref|XP_774556.1| hypothetical protein CNBG0520 [Cryptococcus neoformans var.
          neoformans B-3501A]
 gi|50257196|gb|EAL19909.1| hypothetical protein CNBG0520 [Cryptococcus neoformans var.
          neoformans B-3501A]
          Length = 1215

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYA-SLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          ++++ L +  F++Y     +  FD       G NG GK+NIL+AI F   ++  +  R  
Sbjct: 1  MRVEELILDGFKSYPVRTTISGFDESFNAITGLNGSGKSNILDAICFVLGITNMQSVRAN 60

Query: 60 SYADVT 65
          +  D+ 
Sbjct: 61 NLMDLI 66


>gi|325474066|gb|EGC77254.1| chromosome partition protein SmC [Treponema denticola F0402]
          Length = 980

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           + +K L I  F+++   +++ F    T  +G NG GK+N+++A+ ++   +  R      
Sbjct: 1   MFLKSLEIFGFKSFPDRVKIEFADGITALLGPNGCGKSNVVDAVKWVLGEQSSRTLRADK 60

Query: 63  --DVTRIGSP-----SFFSTFARVEGMEG-----LADISIKLETRDDRSVRCLQIND-VV 109
             DV   G+      +       +   +G     L++I+IK              N    
Sbjct: 61  MEDVIFNGTEKRNQLNIAEVTLTISNEKGLLNLDLSEIAIKRRLYRSGESEYFINNQPAK 120

Query: 110 IRVVDELNKHLRI------SWLVPSMDRIFSGLSMERRRFLD 145
           +R + EL     +            +D+I S    ERR   +
Sbjct: 121 LREIRELFWDTGVGKAAYSVMEQGKIDQILSSKPEERRYLFE 162


>gi|262172128|ref|ZP_06039806.1| DNA repair protein RecN [Vibrio mimicus MB-451]
 gi|261893204|gb|EEY39190.1| DNA repair protein RecN [Vibrio mimicus MB-451]
          Length = 554

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 58/182 (31%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       + R LD+     D        + +       L+
Sbjct: 117 LKTLGQLLINVHGQHAHQQLMK--PEYQLRMLDQYAGHTDLLKATRHAY-QNWRQASNLL 173

Query: 167 RG 168
           + 
Sbjct: 174 KQ 175


>gi|322418393|ref|YP_004197616.1| chromosome segregation protein SMC [Geobacter sp. M18]
 gi|320124780|gb|ADW12340.1| chromosome segregation protein SMC [Geobacter sp. M18]
          Length = 1177

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +KIK L I  F+++     L F+   T  VG NG GK+N+++AI ++      +  R  S
Sbjct: 1  MKIKRLEIHGFKSFQDKSVLDFNQPITGVVGPNGCGKSNVVDAIRWVMGEQSAKNLRGKS 60

Query: 61 YADVTRIGSPSF 72
            D+   G   F
Sbjct: 61 MEDII-FGGTEF 71


>gi|149246598|ref|XP_001527727.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146447681|gb|EDK42069.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1073

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 3/120 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYADV 64
           ++ + +  F  Y+    V      + +G NG GK+ ++ AI     G+    +R +   +
Sbjct: 26  LRSIKVWNFTTYSYTEFVLSPTLNMIIGPNGSGKSTLVAAICIGLAGKIDLIKRKNLKSI 85

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G          +E   GL  I IK +     SV  L         +  L K   I  
Sbjct: 86  IKTGQERA-KIEITMENFSGLPPIRIKRDFSAKESVWYLDDKKCTESAIKNLRKKFNIQL 144


>gi|331265720|ref|YP_004325350.1| ATPase involved in DNA repair, putative [Streptococcus oralis
          Uo5]
 gi|326682392|emb|CBZ00009.1| ATPase involved in DNA repair, putative [Streptococcus oralis
          Uo5]
          Length = 880

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +KI+   I  F+N    R+  F    T+FVG NG GKT I +A+     GR
Sbjct: 1  MKIQKKFIKNFKNIKGTRIIDFQENVTLFVGPNGFGKTTIFDALELSLTGR 51


>gi|314933412|ref|ZP_07840777.1| cell division protein Smc [Staphylococcus caprae C87]
 gi|313653562|gb|EFS17319.1| cell division protein Smc [Staphylococcus caprae C87]
          Length = 1189

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2  VYLKSIDAIGFKSFADHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61 YADVTRIGSPS 71
            D+   G+  
Sbjct: 62 MEDIIFSGAEH 72



 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 68/160 (42%), Gaps = 12/160 (7%)

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY---AKKLFDG 254
               R   +N   + + E   KE    I   +   ++G+F  +F A+++ +    K+LF G
Sbjct: 997  LNERYTFLNEQRTDLRE--AKETLEQIINEMDREVEGRFKDTFHAVQDHFTTVFKQLFGG 1054

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
             + +             D+IV    K +  ++  S GE+ +  + +  A  ++       
Sbjct: 1055 GQAELRLTEDDYLSAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKV-----RS 1109

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDK 352
            AP ++LDE+ A LDE       + + ++  Q  F+  T +
Sbjct: 1110 APFVILDEVEAALDEANVIRYAQYLNELSEQTQFIVITHR 1149


>gi|220905722|ref|YP_002481033.1| ABC transporter ATP-binding protein [Cyanothece sp. PCC 7425]
 gi|219862333|gb|ACL42672.1| ABC transport protein, ATP-binding subunit [Cyanothece sp. PCC
          7425]
          Length = 382

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +++ ++I  FR    + L      T+ +G NG GKT+ L+A+S LS
Sbjct: 3  RLESISIKGFRRLQHVDLEM-RNLTVMIGANGAGKTSFLDALSILS 47


>gi|158425882|ref|YP_001527174.1| chromosome segregation protein [Azorhizobium caulinodans ORS 571]
 gi|158332771|dbj|BAF90256.1| chromosome segregation protein [Azorhizobium caulinodans ORS 571]
          Length = 1150

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K   L +  F+ +     L+ +   T  VG NG GK+N++EA+ ++   S  + FR   
Sbjct: 1   MKFNRLRLVGFKTFVEPTDLLIEPGLTGVVGPNGCGKSNLVEALRWVMGESSHKAFRAND 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G     + +      +++  E  A         I++  R DR      +IN  
Sbjct: 61  MDDVIFSGTTGRPARNTAEVALQLDNAERTAPAGFNDHDLIEVVRRIDRGQGSHYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      I       RRR L+
Sbjct: 121 DVRARDVNMLFADASTGARSPALVRQGQIGEIVGAKPAARRRILE 165



 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 71/221 (32%), Gaps = 28/221 (12%)

Query: 128  SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL----LT---EGYFDS 180
             +     G     R   + +     P      I  ER  R R RL    L    E     
Sbjct: 899  EITEALDGPPESAREHAELVDDGRQPDISAIEIALERAKRERERLGAVNLRAEIELTETE 958

Query: 181  SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   ++  +  EL   I   R   I +L+    E +Q              +DG F + F
Sbjct: 959  TQHDTLVRERDELNEAIRRLRGA-IASLNREARERLQASFA---------VVDGHFRKLF 1008

Query: 241  CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              L      +L      D +            +      K  +++  S GEQ +  + + 
Sbjct: 1009 DTLFGGGEAQLVLTDADDPLE------AGLDIIAKPPGKKPQSLSLLSGGEQALTAMALI 1062

Query: 301  LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
             A        T  API +LDE+ A LD+        ++ ++
Sbjct: 1063 FAVF-----LTNPAPICVLDEVDAPLDDSNVERFCTLMDEM 1098


>gi|78188397|ref|YP_378735.1| chromosome segregation protein SMC [Chlorobium chlorochromatii
           CaD3]
 gi|78170596|gb|ABB27692.1| Chromosome segregation protein SMC [Chlorobium chlorochromatii
           CaD3]
          Length = 1190

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 92/286 (32%), Gaps = 41/286 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           + +  + +  F+++A  +R+ FD   T  VG NG GKTN+++A+   L   +    R A 
Sbjct: 1   MYLAKIELLGFKSFAQKVRIRFDKGLTAIVGPNGCGKTNVVDAMRWVLGEQKSSLLRSAK 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQINDV-------VIRV 112
             ++   G+ +      A V      +   + LE  +    R L  N         V   
Sbjct: 61  MENIIFNGTRTLKPLSMAEVSLTIENSRNVLPLEYTEVTITRRLYRNGESEFFLNQVACR 120

Query: 113 VDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      + +            ++ I S  S ER +  +             +  ++
Sbjct: 121 LKDILDLFTDTGMSSDAYSVIELKMIEEIISNKSEERLKLFEE---------AAGITRYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN--------IARVEMINALSSLIMEY 215
           +  +   +LL     D      ++  +AE+  K+           R+  I      +   
Sbjct: 172 QRRKQTFKLLESTSRD---LLRVDDVLAEVEKKVRSLKTQVRKAERLREIKERIRALELA 228

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +   +   +   L         +     ++       +    +   
Sbjct: 229 LAWRSMEELHDKLEPMQRSISKEELINHEQSATIARMESASQEMEL 274


>gi|310791633|gb|EFQ27160.1| RecF/RecN/SMC N terminal domain-containing protein [Glomerella
          graminicola M1.001]
          Length = 1199

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F     + VG NG GK+N   AI F
Sbjct: 1  MYIKQIIIQGFKSYKEQTVIEPFSPGTNVIVGRNGSGKSNFFAAIRF 47



 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 23/194 (11%)

Query: 161  DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE- 219
             +      +++LL       +   SIE  +A L  + + A       +S       +K  
Sbjct: 981  QYNSFTSQQDQLLKRRKELDASQESIEELVAHLDQRKDEAIERTFKQVSKEFATIFEKLV 1040

Query: 220  NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
               H +L +    D + D                 R ++     T +G   S       D
Sbjct: 1041 PAGHGRLVIQRRTDRRVDPESDE---------EQNRAVE---NYTGVGISVS-FNSKTLD 1087

Query: 280  KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV- 338
            +   I   S G++ +  + +  A        T  +P+++ DE+ A+LD   R A+  ++ 
Sbjct: 1088 EQQRIQQLSGGQKSLCALCLIFAL-----QQTESSPMVIFDEVDANLDAQYRTAVASLLE 1142

Query: 339  ---TDIGSQIFMTG 349
                + G+Q   T 
Sbjct: 1143 SISQEAGTQFICTT 1156


>gi|221310347|ref|ZP_03592194.1| DNA repair and genetic recombination [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314671|ref|ZP_03596476.1| DNA repair and genetic recombination [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319594|ref|ZP_03600888.1| DNA repair and genetic recombination [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323870|ref|ZP_03605164.1| DNA repair and genetic recombination [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767536|ref|NP_390304.2| factor for double strand breaks DNA repair and genetic
           recombination [Bacillus subtilis subsp. subtilis str.
           168]
 gi|239938691|sp|P17894|RECN_BACSU RecName: Full=DNA repair protein recN; AltName: Full=Recombination
           protein N
 gi|225185164|emb|CAB14355.2| factor for double strand breaks DNA repair and genetic
           recombination [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 576

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 27/249 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F+   T+  G+ G GK+ I++AIS L  GRG      ++  R
Sbjct: 2   LAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRG-----SSEFVR 56

Query: 67  IGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDV--VIR 111
            G                       E    ++D  I +      S + + ++N     I 
Sbjct: 57  YGEAKAELEGLFLLESGHPVLGVCAEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIA 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            + E+ + L           +    +  +   +F    V +    ++     + +L++  
Sbjct: 117 SLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALKTYQEGYQRYVKLLKKL 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
            +L       +     I+ Q+     +I  A++E+      L  E  Q  NF  I  SL 
Sbjct: 177 KQLSESEQEMAHRLDLIQFQL----EEIESAKLELNED-EQLQEERQQISNFEKIYESLQ 231

Query: 230 GFLDGKFDQ 238
              +    +
Sbjct: 232 NAYNALRSE 240


>gi|124484875|ref|YP_001029491.1| hypothetical protein Mlab_0046 [Methanocorpusculum labreanum Z]
 gi|124362416|gb|ABN06224.1| SMC domain protein [Methanocorpusculum labreanum Z]
          Length = 242

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 13/64 (20%)

Query: 1  MTNRIKIKFLNISEF------------RNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI 47
          M+  + +  + +  F            RN   +  L F++  T FVG+NG GK+ +LEAI
Sbjct: 1  MSGTVYLHKIMLKHFDDTSYLADLPVVRNLEHMGELSFESPVTFFVGENGSGKSTLLEAI 60

Query: 48 SFLS 51
          +  +
Sbjct: 61 AISA 64


>gi|19075406|ref|NP_587906.1| Smc5-6 complex SMC subunit Smc6 [Schizosaccharomyces pombe 972h-]
 gi|1709997|sp|P53692|SMC6_SCHPO RecName: Full=Structural maintenance of chromosomes protein 6;
           AltName: Full=DNA repair protein rad18
 gi|1150622|emb|CAA56900.1| rad18 [Schizosaccharomyces pombe]
 gi|3859084|emb|CAA21961.1| Smc5-6 complex SMC subunit Smc6 [Schizosaccharomyces pombe]
          Length = 1140

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 16/137 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +++  F  + SL++ F  +    +G NG GK+ IL  ++     +     R  +   
Sbjct: 97  IECIHLVNFMCHDSLKINFGPRINFVIGHNGSGKSAILTGLTICLGAKASNTNRAPNMKS 156

Query: 64  VTRIGSPSF-FSTFARVEGME--------GLADISIKLETRDDRSVRCLQINDVVIRV-- 112
           + + G      S      G E            I   +        R    N  VI    
Sbjct: 157 LVKQGKNYARISVTISNRGFEAYQPEIYGKSITIERTIRREGSSEYRLRSFNGTVISTKR 216

Query: 113 --VDELNKHLRISWLVP 127
             +D +  H+ +    P
Sbjct: 217 DELDNICDHMGLQIDNP 233


>gi|315186423|gb|EFU20183.1| AAA ATPase [Spirochaeta thermophila DSM 6578]
          Length = 569

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 71/382 (18%), Positives = 127/382 (33%), Gaps = 86/382 (22%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR------------ 54
           +  L +  F+      +    +  +FVG N  GKT+ L+AI+    G             
Sbjct: 2   LTKLCVRNFKVLDECEIDLSQRV-VFVGPNNSGKTSALQAIALWDLGVKRWLEKRGTQDV 60

Query: 55  -GFR---RASYADVTRIGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDV 108
              R     S  D+  I  PS    +  +   EG            R +  V  +  N  
Sbjct: 61  PSKRAGVTISRQDLISIPVPSAKLLWRDLHVREGERIGGRAQTRNVRIEIGVEGVDTNLW 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             R+  +      I    P            RR  LD       P H + +         
Sbjct: 121 ECRLEFDYANEESIYCRPP-------LGPNRRR--LDV------PAHLKDLQ-------- 157

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
               L          ++ E ++    +++ +        L +L  + +Q EN        
Sbjct: 158 -IAYLPPMSG----LAAREDRLELGSIRVRLGEGRTAEVLRNLCWQVLQSENG------- 205

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                    + +  +KE+   +LF  R  D           R ++ +DY   + T+   S
Sbjct: 206 --------REKWERIKEDMY-RLFGSRLNDPK-----YNLERGEITLDYSAPSNTVLEIS 251

Query: 289 ---TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV----TDI 341
               GEQ+ +L+  ++A             +LLLDE  AHL+  ++  ++ ++       
Sbjct: 252 ATGRGEQQTLLLLAYMA--------INTGSVLLLDEPDAHLEILRQRQIYELLCEHSEAT 303

Query: 342 GSQIFMTGTDKSVFDSLNETAK 363
            SQI +  +   +   LNE A+
Sbjct: 304 NSQI-IAASHSEIL--LNEAAQ 322


>gi|237799567|ref|ZP_04588028.1| chromosome segregation protein SMC [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331022423|gb|EGI02480.1| chromosome segregation protein SMC [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 227

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 37/222 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS S       S     +  +G         A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
           +  ++   R     +   + + +  + +  ++     +++  
Sbjct: 170 ISKYKERRRETENRIRRTHENLARLTDLREELERQLERLHRQ 211


>gi|218246818|ref|YP_002372189.1| DNA repair protein RecN [Cyanothece sp. PCC 8801]
 gi|218167296|gb|ACK66033.1| DNA repair protein RecN [Cyanothece sp. PCC 8801]
          Length = 586

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 70/213 (32%), Gaps = 32/213 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L L F     +  G+ G GK+ IL+AI  +  G+         + R
Sbjct: 2   LSLLQIKNFTLVDQLTLQFGQGLNVLTGETGAGKSIILDAIDTVLGGK-----VNNRLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD--ISIKLETRDDRSV---RCLQINDVVIRVVDELNKHL- 120
            G     S  A  +G   L +     ++E  DD ++   R L +    +R    +N  + 
Sbjct: 57  QGMQQA-SLEATFQGDTTLNEWLHQQEIEPLDDGTIVCYRELILTGETLRSRSRINGVMV 115

Query: 121 ----------RISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDPR--HRRRMIDFE 163
                     R+  +      +    S  +R  LD      ++   D            E
Sbjct: 116 NLQVMGQLRDRLVEITAQGQTVQLMDSTRQRELLDLYGGTTLLKQRDRVEIAYENWKLVE 175

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           + +  R +   +          ++ Q+ EL   
Sbjct: 176 KALEKRRQSEKDR---LQRLDLLDYQLKELSEA 205


>gi|77166477|ref|YP_345002.1| hypothetical protein Noc_3031 [Nitrosococcus oceani ATCC 19707]
 gi|254435139|ref|ZP_05048646.1| hypothetical protein NOC27_2202 [Nitrosococcus oceani AFC27]
 gi|76884791|gb|ABA59472.1| hypothetical protein Noc_3031 [Nitrosococcus oceani ATCC 19707]
 gi|207088250|gb|EDZ65522.1| hypothetical protein NOC27_2202 [Nitrosococcus oceani AFC27]
          Length = 70

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          +++K L I +++N     L FD      +FVG NG GK+N+ EA+
Sbjct: 1  MRLKSLYIGQYKNLLDFSLSFDGSSFIDVFVGKNGTGKSNLFEAL 45


>gi|313888471|ref|ZP_07822138.1| chromosome segregation protein SMC [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845500|gb|EFR32894.1| chromosome segregation protein SMC [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 1173

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 74/191 (38%), Gaps = 22/191 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + +  F+++A+  ++  D   T  VG NG GK+NI +AI+++   S  +  R + 
Sbjct: 1   MFLKSVTMQGFKSFANRTKIELDETTTAIVGPNGSGKSNITDAITWVLGESSAKNLRGSK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ----INDVVIR 111
             DV   G+ S             +  +   ++     +   R  R L+    IN+   R
Sbjct: 61  MEDVIFSGTDSKKPLGMAEVTIVFDNSDKSLNVDYSEVSVTRRMYRSLESEFLINNKKCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + K          ++ + S    +RR   +        ++++      
Sbjct: 121 LKDIKELFMDTGIGKDGYSVIGQGKIESVLSSKPEDRRNIFEEAAGISKYKYKKIQSR-N 179

Query: 164 RLMRGRNRLLT 174
           +L++    L+ 
Sbjct: 180 KLLKTEENLIR 190


>gi|307207691|gb|EFN85328.1| Structural maintenance of chromosomes protein 2 [Harpegnathos
           saltator]
          Length = 1177

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++Y   + +  FD +     G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MYIKSMVLEGFKSYGKRIEINGFDKEFNAITGFNGSGKSNILDAICFVLGITNLGQVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+  + G          +            G E   +I I  +       +   IN 
Sbjct: 61  SLQDLVYKSGQAGIKKASVTITFDNHDRESSPMGYEHHEEIVITRQVVIGGKNK-YMING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
             ++     +    +   V +   +    
Sbjct: 120 TNVQNKRVQDLFCSVQLNVNNPHFLIMQG 148


>gi|156042408|ref|XP_001587761.1| hypothetical protein SS1G_11001 [Sclerotinia sclerotiorum 1980]
 gi|154695388|gb|EDN95126.1| hypothetical protein SS1G_11001 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1177

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F N+ +L+++        VG+NG GK+ +L  I+    G+     R +S   
Sbjct: 129 IEEIQCMNFMNHENLKVMLGPLINFVVGENGAGKSAVLTGITLCLGGKPSATNRGSSMKS 188

Query: 64  VTRIGSPSFFSTF 76
           + + G+       
Sbjct: 189 LIKTGTDRGILVV 201


>gi|83313080|ref|YP_423344.1| chromosome segregation ATPase [Magnetospirillum magneticum AMB-1]
 gi|82947921|dbj|BAE52785.1| Chromosome segregation ATPase [Magnetospirillum magneticum AMB-1]
          Length = 1154

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 31/227 (13%)

Query: 6   KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           +   L +S F+++     LV +   T  VG NG GK+N++EA+ ++   +  R  R    
Sbjct: 3   QFTKLRLSGFKSFVDPAELVIEPGMTGVVGPNGCGKSNLIEALRWVMGETSARQMRGGEM 62

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADI-----------SIKLETRDDRS-VRCLQINDVV 109
            DV   G  S        E M GL +             I++  R +R      +IN + 
Sbjct: 63  DDVI-FGGTSGRPARNVAEVMLGLDNTARTAPPQFDRDEIEVMRRIERGNGSNYRINGLD 121

Query: 110 IRVVD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
            R  D      +     R S LV    + ++ +    +RR  L+     I   +      
Sbjct: 122 TRARDVQLLFADAATGARSSGLVSQGKVGQLINAKPADRRSLLE-EAAGISGLYS---RR 177

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-RVEMINA 207
            E  +R +N  L     D    ++++ Q+  L  +   A R   ++ 
Sbjct: 178 HEAELRLKNAELNLSRLDDV-LATLDEQLKSLQKQARQANRYRTLSE 223


>gi|317129741|ref|YP_004096023.1| ATP-dependent endonuclease of the OLD family [Bacillus
          cellulosilyticus DSM 2522]
 gi|315474689|gb|ADU31292.1| ATP-dependent endonuclease of the OLD family [Bacillus
          cellulosilyticus DSM 2522]
          Length = 669

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I  + I  FRNY  + +V   +  + +G+N VGKTN L AI  +
Sbjct: 9  ISRVKIKNFRNYKDVDVVLSHK-QVIIGENNVGKTNFLRAIQII 51


>gi|119476277|ref|ZP_01616628.1| hypothetical protein GP2143_07499 [marine gamma proteobacterium
           HTCC2143]
 gi|119450141|gb|EAW31376.1| hypothetical protein GP2143_07499 [marine gamma proteobacterium
           HTCC2143]
          Length = 1168

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 101/280 (36%), Gaps = 37/280 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  +
Sbjct: 1   MRLKTIKLAGFKSFVDPTNVSFPSNLGCVVGPNGCGKSNIIDAVRWVMGESSAKNLRGEN 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIK------LETRDDRSVRC-----LQINDV 108
             DV   GS +      A +E +   +D ++        E    R V         +N  
Sbjct: 61  MTDVIFNGSINRQPVGQASIELVFDNSDGTVGGEYARFAEISIRRKVTREATSDYYLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P            R+      E R F++        +++ R 
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYAIIEQGMISRLIESKPEELRVFIEEAAG--ISKYKERR 177

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-RVEMINALSSLIMEYVQK 218
            + E  MR   R +      +     +E Q+  L  +   A R   +     L+   +Q 
Sbjct: 178 RETENRMR---RTMENLERLTDLRDELERQLQHLQRQAQAAERYTELKKEERLLKAQLQA 234

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
             +  +   +        +Q    L+ +    + + R +D
Sbjct: 235 LQWSTLDGQVKQH-----EQEIRGLEVKLEAVIAEQRSID 269



 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 19/187 (10%)

Query: 173  LTEGYFDSSWCSSIE---AQMAELG----VKINIA-----RVEMINALSSLIMEYVQKEN 220
            L +   + +W  ++E    ++A LG      I+       R   ++A ++ + E ++   
Sbjct: 942  LPDDAREKAWLENLESIGRRVARLGPINLAAIDEYKSQSERKTYLDAQNNDLEEALRTLE 1001

Query: 221  FPHIKLSLTGFLDGK--FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                K+        K  FD+   +L+E + K    G     M+   L+    + +     
Sbjct: 1002 NAIHKIDKETRQRFKDTFDRVNTSLQELFPKVFGGGTAYLEMTGDDLLNTGIAIMARPPG 1061

Query: 279  DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
             +  TI   S GE+ +  + +  +  RL       AP  +LDE+ A LD+       R+V
Sbjct: 1062 KRNSTIHLLSGGEKALTAIALVFSIFRL-----NPAPFCMLDEVDAPLDDANVGRYARLV 1116

Query: 339  TDIGSQI 345
             ++  Q+
Sbjct: 1117 KEMSQQV 1123


>gi|74139066|dbj|BAE38432.1| unnamed protein product [Mus musculus]
          Length = 171

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 16/116 (13%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                          A +    G   IS  +E   D S   L I+   + +   + 
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIG 103


>gi|315185900|gb|EFU19665.1| AAA ATPase [Spirochaeta thermophila DSM 6578]
          Length = 347

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 10/107 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
           + + ++    F  ++ L L       +FVG NG GKT++++A            +   D 
Sbjct: 1   MPLTYIKFENFTAFSFLELNLSPGINVFVGTNGTGKTHLIKAAYAACD-----ISKTKDN 55

Query: 64  ----VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
               + R   PS       V+  +G +  S++L+  +++    L+I 
Sbjct: 56  FADKLIRTFLPSGRMLRRLVKRQQGSSRASLELKREEEQPGEPLRIR 102


>gi|284054275|ref|ZP_06384485.1| ATPase [Arthrospira platensis str. Paraca]
 gi|291568930|dbj|BAI91202.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 395

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF-- 56
           M+   KI++L +  +R   +L L      T+F+G NG GK+ I +  +FLS         
Sbjct: 1   MSTIPKIEYLKVRNYRALQNLELKKITPLTVFLGPNGSGKSTIFDVFAFLSECFTESLSK 60

Query: 57  ---RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98
              RR  + ++    S        +         I+  L   ++ 
Sbjct: 61  AWDRRGRFRELRTRDSQGCIVIELKYRETSASPLITYHLAINEEN 105


>gi|294866984|ref|XP_002764916.1| structural maintenance of chromosomes smc3, putative [Perkinsus
           marinus ATCC 50983]
 gi|239864752|gb|EEQ97633.1| structural maintenance of chromosomes smc3, putative [Perkinsus
           marinus ATCC 50983]
          Length = 304

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 5   IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPG-----RGFR 57
           + +K L I  ++ Y      +   A   +FVG NG GK+NI  AI F   G        R
Sbjct: 46  MHLKTLTIKGYKTYRDRTSIVDLHAGVNVFVGLNGSGKSNIYSAIRFALGGDRIASEQHR 105

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLET 94
           R+         S     T A VE +   +D  I ++ 
Sbjct: 106 RSLL-----HQSHGRQVTSAYVELILDNSDGRIPIDK 137


>gi|167855717|ref|ZP_02478473.1| predicted ATP-dependent endonuclease of the OLD family protein
           [Haemophilus parasuis 29755]
 gi|167853173|gb|EDS24431.1| predicted ATP-dependent endonuclease of the OLD family protein
           [Haemophilus parasuis 29755]
          Length = 582

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/387 (16%), Positives = 130/387 (33%), Gaps = 94/387 (24%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K++ ++I  FR+   + +     +T+ VG N  GK+NI+ A+      R F    Y DV
Sbjct: 1   MKLRKIHIKNFRSIHDVEIEVH-NYTMLVGANNAGKSNIMAAL------RAF----YEDV 49

Query: 65  --TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR----------------SVRCLQIN 106
             T+   P F S+    E +E  + + +K E  D+                 +VR   I+
Sbjct: 50  AWTKDDEPKFNSSVLENE-IEVESWVELKFELTDNEWNALADKYKGTKEKHLTVRKYFIS 108

Query: 107 DVVIR-VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
              ++     +   +         + +F G        L ++++   P         +  
Sbjct: 109 KEKVKPRQSNIYGIVDGVI----DESLFYGAKNIGSAKLGQIIY--IPAFISASEQMKTS 162

Query: 166 ----MRGR-NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
               +R   N +L +   +S     +     E   +    +   ++ +++ I        
Sbjct: 163 GASPLRDMLNLMLKKALVNSPAYQKVITSFDEFNDE-AKNKNGFLDQIANPIN------- 214

Query: 221 FPHIKLSLTGFLDGKFDQSFCALK-EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
                 S       KFD S  A+  E+  K L     +DSM           D  +    
Sbjct: 215 ------SAISSWGIKFDMSIGAISPEDITKNLIRHSFVDSMLG---------DYALSL-- 257

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-------------PILLLDEISAHL 326
                 +G  G Q+  L  +     +L+   +                 ++L +E  A L
Sbjct: 258 ----DRYG-HGFQRSFLYEL----IKLVPEISNENNTTQEKNDFNPDFTLILFEEPEAFL 308

Query: 327 DEDKRNALFRIVTDIG----SQIFMTG 349
              ++  +   +  +G     Q+ +T 
Sbjct: 309 HPTQQENMAYHLRRLGEGNEQQVIITS 335


>gi|150865152|ref|XP_001384253.2| chromosome condensation and segregation protein [Scheffersomyces
           stipitis CBS 6054]
 gi|149386408|gb|ABN66224.2| chromosome condensation and segregation protein [Scheffersomyces
           stipitis CBS 6054]
          Length = 1011

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 100/278 (35%), Gaps = 35/278 (12%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLS------PGRGF 56
           + IK + I  F+ Y +  ++      H + VG NG GK+N   AI F+        GR  
Sbjct: 1   MHIKKIIIQGFKTYKNATVIDLVSPHHNVVVGRNGSGKSNFFAAIRFVLSDDYTHMGREE 60

Query: 57  RRASYADVTRIGSPSFFSTFARV-----EGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
           R+A    +   GS +  S +  +     +G   L    + +            ++     
Sbjct: 61  RQA----LIHEGSGTVMSAYVEIVFDNRDGRIPLNRNEVVIRRTIGLKKDDYALDGKSAT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
             D LN      +   +   I               +R   L  +  A       ++ + 
Sbjct: 117 RSDILNLLESAGFSRSNPYYIVPQGRITSLTNAKDSDRLVLLKEVSGAT--VFENKLKES 174

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           E+ M   N    +   D +  +SI+ ++++L  +I  A ++   +L     + ++   F 
Sbjct: 175 EKEM--NNSTYKKQRIDET-LASIDERLSDL--QIESADLKKFQSLDKS-KKILEYNLFD 228

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
                L   +D + D+++  L  E  + L D    + +
Sbjct: 229 REFTDLKTSID-ETDETYNELLTESQQDLQDLDNREKL 265


>gi|58270030|ref|XP_572171.1| nuclear condensin complex protein [Cryptococcus neoformans var.
          neoformans JEC21]
 gi|57228407|gb|AAW44864.1| nuclear condensin complex protein, putative [Cryptococcus
          neoformans var. neoformans JEC21]
          Length = 1215

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYA-SLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          ++++ L +  F++Y     +  FD       G NG GK+NIL+AI F   ++  +  R  
Sbjct: 1  MRVEELILDGFKSYPVRTTISGFDESFNAITGLNGSGKSNILDAICFVLGITNMQSVRAN 60

Query: 60 SYADVT 65
          +  D+ 
Sbjct: 61 NLMDLI 66


>gi|190341543|gb|ACE74848.1| RecN [Enterobacter kobei]
          Length = 553

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 66/201 (32%), Gaps = 19/201 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-----RRASY 61
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR       R A+ 
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGRAEGDMVRRGANR 61

Query: 62  ADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRVVDELN 117
           AD+  R       +    +E  +        L        R    IN   V +  + EL 
Sbjct: 62  ADLCARFSLKDTPAAQRWLEQNQLEDGRECLLRRVISSDGRSRGFINGTAVPLSQLRELG 121

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + L       +  ++      +++  LD       +  +   H R      R +    + 
Sbjct: 122 QLLIQIHGQHAHQQLVK--PEQQKALLDGYAGEYALTQLMAEHYRLWHQSCRELAQHQQQ 179

Query: 173 LTEGYFDSSWCSSIEAQMAEL 193
             E    +   +    Q+ EL
Sbjct: 180 SQERAARAELLAY---QLKEL 197


>gi|126656886|ref|ZP_01728064.1| hypothetical protein CY0110_01869 [Cyanothece sp. CCY0110]
 gi|126621724|gb|EAZ92433.1| hypothetical protein CY0110_01869 [Cyanothece sp. CCY0110]
          Length = 387

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          IK + I  FR +   ++    +  +  G N  GKT +LEAI+ 
Sbjct: 2  IKNIEIENFRCFEHTKIEGFERVNLIGGKNNSGKTALLEAIAL 44


>gi|108757445|ref|YP_634329.1| hypothetical protein MXAN_6198 [Myxococcus xanthus DK 1622]
 gi|108461325|gb|ABF86510.1| hypothetical protein MXAN_6198 [Myxococcus xanthus DK 1622]
          Length = 471

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +K+  L +  +RN      LVF   + + +G+NG G+T +LE IS
Sbjct: 42 MKLTRLEVHHYRNVVPGTSLVFSPSYNLVLGENGTGRTTLLELIS 86


>gi|302059773|ref|ZP_07251314.1| hypothetical protein PsyrptK_07265 [Pseudomonas syringae pv.
          tomato K40]
          Length = 767

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI--SFLSPGRGFR 57
          M   + I+ L I+ FR   S+R+   A+ T+ VG N  GK++ + A+    +S    FR
Sbjct: 1  MEELMHIQHLEIANFRKLLSVRIDLAAETTLLVGANNSGKSSAMLALRRFLVSKASAFR 59


>gi|261839218|gb|ACX98983.1| hypothetical protein HPKB_0374 [Helicobacter pylori 52]
          Length = 394

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I+ + I  F+N+    +    +  I  G+N  GK+N+LE +  L
Sbjct: 2  IQSVRIKNFKNFKDTTIDGFTKLNIITGENNAGKSNLLEVLYCL 45


>gi|189425736|ref|YP_001952913.1| DNA repair protein RecN [Geobacter lovleyi SZ]
 gi|189421995|gb|ACD96393.1| DNA repair protein RecN [Geobacter lovleyi SZ]
          Length = 554

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/401 (15%), Positives = 120/401 (29%), Gaps = 88/401 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I        L+L F     +  G+ G GK+ I++A++ +  GR     + AD+ R
Sbjct: 2   LTELSIRNVAIIDHLQLSFGPGLNLLTGETGAGKSIIIDALTLVCGGR-----ASADLIR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVIR--V 112
            G                    R++     A   + ++    RS R  + +N  +     
Sbjct: 57  TGEDEATVEALFDLSGLPVLRERLQEAGLEAGEELLIKRTLSRSGRNRVYLNGSLATLGQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN-R 171
           + ++ + L           +           LD    A++             +R R   
Sbjct: 117 LTDIGRQLVTIHGQHESQALLR--PDYHLILLDAFAGAVE-------------LRQRFGA 161

Query: 172 LLTEGYFDSSWCSSIEAQ----------MAELGVKINIARVEMINALSSLIMEYVQKENF 221
                       +  + Q          +A    +I  AR++       L+ +     N 
Sbjct: 162 AFDRWRQLGDRLAHFDEQERDAAHRLDLVAFQADEIAAARLQPGEE-QQLVEQQRLLANA 220

Query: 222 PHIKLSLTGFLDGKF--DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
             +  S  G  +  +  DQS     +     L D   +D+    T +     +  +   D
Sbjct: 221 ERLSCSTGGAYEALYGGDQSLLGELKRVVAALRDAAAIDTAL--TPLHNLLDEGYLQLED 278

Query: 280 KAIT-IAHGST-----GEQKV--------------------VLVGIFLAHARLISNTTGF 313
            A+    + S       + K                      ++ + +A    +    G 
Sbjct: 279 AALQLRDYASRIEADPEQLKAVEDRLDLLVRLKRKYAPDIDAIIALGVALEAELEELRGR 338

Query: 314 ------------APILLLDEISAHLDEDKRNALFRIVTDIG 342
                       A   LLD + A L  ++R A  R+   +G
Sbjct: 339 SRSRGELEQELAAQRSLLDRLGAELGSNRRAAAARLEQQLG 379


>gi|153872219|ref|ZP_02001174.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152071318|gb|EDN68829.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 371

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          I+F+ I+ +R+  SL L      ++F G NG GKTN  EA+ F
Sbjct: 5  IRFIKIANYRSIDSLELHNIKPFSVFAGPNGAGKTNFFEALDF 47


>gi|91226175|ref|ZP_01261065.1| hypothetical protein V12G01_08680 [Vibrio alginolyticus 12G01]
 gi|91189409|gb|EAS75687.1| hypothetical protein V12G01_08680 [Vibrio alginolyticus 12G01]
          Length = 544

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 8/106 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + IS FR    L L FD   T  +G+N  GK+++L+A+S   P  G        +
Sbjct: 1   MRLERIEISGFRGIKRLSLSFDE-LTTLIGENTWGKSSLLDALSIALPANG-------SL 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            +     F   ++          I +  + +D   V+  +   +  
Sbjct: 53  YQFKLKDFHVDYSISHPQTQHLQIIVCFKAQDKNEVKAGRYRRIKP 98


>gi|134298948|ref|YP_001112444.1| DNA repair protein RecN [Desulfotomaculum reducens MI-1]
 gi|134051648|gb|ABO49619.1| DNA replication and repair protein RecN [Desulfotomaculum reducens
           MI-1]
          Length = 565

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 13/155 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           ++ L I  F     + + F     +  G+ G GK+ +++A+     GR      R     
Sbjct: 2   LQSLYIKNFALIDDVEVDFSDGLNVVTGETGAGKSMLIDALQVALGGRASVEFIRSGRDK 61

Query: 63  DVTRIGSP----SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIR--VVDE 115
              +        S+        G++   D  + L    +RS +   +IN   I   +  E
Sbjct: 62  ATVQATFDISHLSWLKKKLEESGIDYDEDHLLILSRELNRSGKNTCRINGRPINLGIYRE 121

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           +   L           + +    + R  LDR+   
Sbjct: 122 MGSGLIDMLGQYEQQSLLNQ--EKHRWLLDRLGGQ 154


>gi|124265200|ref|YP_001019204.1| ATPase [Methylibium petroleiphilum PM1]
 gi|124257975|gb|ABM92969.1| ATPase [Methylibium petroleiphilum PM1]
          Length = 411

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFR-----R 58
           +I +L +  FR   ++ L      T+ +G NG GKT + +  +FLS     G R     R
Sbjct: 9   RIHYLRVQNFRALRNIELKNITPLTVLLGPNGSGKTTLFDVFNFLSECFQGGLRQAWDKR 68

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
               ++   G+        +    +    I+  L   +    
Sbjct: 69  GRAKELKTRGADGPVVIEIKYRESKATPLITYHLSIDEGPKG 110


>gi|330899088|gb|EGH30507.1| hypothetical protein PSYJA_16612 [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 767

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI--SFLSPGRGFR 57
          M   + I+ L I+ FR   S+R+   A+ T+ VG N  GK++ + A+    +S    FR
Sbjct: 1  MEELMHIQHLEIANFRKLLSVRIDLAAETTLLVGANNSGKSSAMLALRRFLVSKASAFR 59


>gi|320662227|gb|EFX29624.1| hypothetical protein ECO5905_04197 [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 773

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 1/107 (0%)

Query: 6   KIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           K+  L I+ F+ +  +   F  +      G NG GKT++ +A+  L  G+  R     + 
Sbjct: 5   KLSKLRINNFKAFDKVEFDFESSSLLTLEGPNGYGKTSVYDALELLFTGKIKRIVQLCET 64

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
              G    +S         G  DI I +E  +D + +         +
Sbjct: 65  IMPGGIKNYSDNLFWNKTNGEDDIEISVEMSNDNNEKLYFSRRAHAK 111


>gi|320329789|gb|EFW85777.1| hypothetical protein PsgRace4_11051 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 661

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 116/393 (29%), Gaps = 57/393 (14%)

Query: 5   IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEA-ISFLSPGRGFRR--- 58
           ++I+ +++S FR +    + +   A+ T  VG N  GKT +L A +      R  R    
Sbjct: 1   MRIESVSLSGFRCFGPNPITVDVSAEITTIVGPNAAGKTALLHAMLKLFGVTRAQRTILR 60

Query: 59  -----ASYADVTRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
                    D     S   F   + A  E   G A            S + + I+     
Sbjct: 61  SDFHLGPDDDPENRDSKYLFIEVSIAFPELKNGTATAET-----IAPSFKHMLIDRAEKP 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            +  +   L   W     D    G   +   ++D +    +   R  +   +R +     
Sbjct: 116 PICRMR--LEAQW---DDDGTVEGEVSQELFWVDTLDEQPENDKRHPVAVADRGLIQ--- 167

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            L          +   A    L  ++  A +E  +     + E  +         S    
Sbjct: 168 -LYYTPASRDAAAQTRATTGALAARLLRA-IEWSSDTEDAVQETTESLTAAFEDESAIAA 225

Query: 232 LDGKFDQSFCALKEEYAK-----KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           +       +  L +E         L   R  D +++  ++    +D       +   I  
Sbjct: 226 ITKALQTRWSDLHDEVVDTNPRLSLVSRRFEDVVNKIAVVFEQGAD------GRERGIEA 279

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAP--------------ILLLDEISAHLDEDKRN 332
            S G+Q +    +  A   L       +               I  L+E   HL      
Sbjct: 280 LSDGQQSLFYFALAAAVFDLEREVVAGSVEGFRDNALRIPALSIFALEEPENHLSPYFLA 339

Query: 333 ALFRIVTDI----GSQIFMTGTDKSVFDSLNET 361
            + R V  +     +Q  +T    +V   +N  
Sbjct: 340 RIIRQVRSLTDQSRAQAIITSHSPAVLSRVNPR 372


>gi|317012208|gb|ADU82816.1| hypothetical protein HPLT_01900 [Helicobacter pylori Lithuania75]
          Length = 394

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I+ + I  F+N+    +    +  I  G+N  GK+N+LE +  L
Sbjct: 2  IQSVRIKNFKNFKDTTIDGFTKLNIITGENNAGKSNLLEVLYCL 45


>gi|297797105|ref|XP_002866437.1| hypothetical protein ARALYDRAFT_496305 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312272|gb|EFH42696.1| hypothetical protein ARALYDRAFT_496305 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 21/139 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I  + +  F  +++L++ F        G NG GK+ IL A+      R     R A+  D
Sbjct: 22  ILRIKVENFMCHSNLQIEFGEWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAATLKD 81

Query: 64  VTRIGSPSFFS---------------TFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             + G                      +  V  +E     S       D   + +     
Sbjct: 82  FIKTGCSYAVVHVEMKNNGEDAFKPEIYGEVIIIERRITDSTTSTVLKDYLGKKVSNKRE 141

Query: 109 VIRVVDELNKHLRISWLVP 127
            +R   EL +H  I    P
Sbjct: 142 ELR---ELVEHFNIDVENP 157


>gi|293393082|ref|ZP_06637397.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291424228|gb|EFE97442.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 548

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 5  IKIKFLNISE-FRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          +K+  L+I   F+N  ++ + FD     T+ VG NG GK+N+LEA+
Sbjct: 1  MKVDKLHIRSRFKNLENVTVDFDQDHLMTVIVGRNGSGKSNVLEAL 46


>gi|260773571|ref|ZP_05882487.1| hypothetical protein VIB_002045 [Vibrio metschnikovii CIP 69.14]
 gi|260612710|gb|EEX37913.1| hypothetical protein VIB_002045 [Vibrio metschnikovii CIP 69.14]
          Length = 553

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 5  IKIKFLNISE-FRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          +K+  L+I   F+N  ++ + FD     T+ VG NG GK+N+LEA+
Sbjct: 1  MKVDKLHIRSRFKNLENVTVDFDEDHLMTVVVGRNGSGKSNVLEAL 46


>gi|240047686|ref|YP_002961074.1| putative ABC transporter ATP-binding protein P [Mycoplasma
          conjunctivae HRC/581]
 gi|239985258|emb|CAT05271.1| Putative ABC transporter ATP-binding protein P [Mycoplasma
          conjunctivae]
          Length = 980

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          +K+  + I  F+++A  + + FD      VG NG GK+NI +AI ++   +     R ++
Sbjct: 1  MKLIKIEIEGFKSFADPVSIAFDGSVVGIVGPNGSGKSNINDAIRWVLGEKSVKQLRGSN 60

Query: 61 YADVTRIGSP 70
            DV   GS 
Sbjct: 61 MDDVIFAGSK 70


>gi|223043720|ref|ZP_03613763.1| chromosome segregation protein SMC [Staphylococcus capitis SK14]
 gi|222442817|gb|EEE48919.1| chromosome segregation protein SMC [Staphylococcus capitis SK14]
          Length = 1189

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R + 
Sbjct: 2  VYLKSIDAIGFKSFADHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSK 61

Query: 61 YADVTRIGSPS 71
            D+   G+  
Sbjct: 62 MEDIIFSGAEH 72



 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 12/160 (7%)

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY---AKKLFDG 254
               R   +N   + + E   KE    I   +   ++G+F ++F A+++ +    K+LF G
Sbjct: 997  LNERYTFLNEQRTDLRE--AKETLEQIINEMDREVEGRFKETFHAVQDHFTTVFKQLFGG 1054

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
             + +             D+IV    K +  ++  S GE+ +  + +  A  ++       
Sbjct: 1055 GQAELRLTEDDYLSAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKV-----RS 1109

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDK 352
            AP ++LDE+ A LDE       + + ++  Q  F+  T +
Sbjct: 1110 APFVILDEVEAALDEANVIRYAQYLNELSEQTQFIVITHR 1149


>gi|218777973|ref|YP_002429291.1| SMC domain protein [Desulfatibacillum alkenivorans AK-01]
 gi|218759357|gb|ACL01823.1| SMC domain protein [Desulfatibacillum alkenivorans AK-01]
          Length = 429

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            F+ +   R+      T+ +G NG GK+N++E +  LS     R     D+T IG
Sbjct: 5  HNFKGFKEARIDLFKPLTVLIGPNGSGKSNLIEGVELLSFLG--RGGRIHDITDIG 58


>gi|319900518|ref|YP_004160246.1| hypothetical protein Bache_0637 [Bacteroides helcogenes P 36-108]
 gi|319415549|gb|ADV42660.1| hypothetical protein Bache_0637 [Bacteroides helcogenes P 36-108]
          Length = 361

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPG 53
          K L I  ++N   L L   A+  + VG N VGK+ +LEA+S +L+ G
Sbjct: 2  KSLYIKNYKNLRELSLDSLARVNLIVGRNNVGKSTLLEAVSIYLANG 48


>gi|317009014|gb|ADU79594.1| hypothetical protein HPIN_01700 [Helicobacter pylori India7]
          Length = 394

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I+ + I  F+N+    +    +  I  G+N  GK+N+LE +  L
Sbjct: 2  IQSVRIKNFKNFKDTTIDGFTKLNIITGENNAGKSNLLEVLYCL 45


>gi|319795357|ref|YP_004156997.1| hypothetical protein Varpa_4724 [Variovorax paradoxus EPS]
 gi|315597820|gb|ADU38886.1| hypothetical protein Varpa_4724 [Variovorax paradoxus EPS]
          Length = 487

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 129/421 (30%), Gaps = 85/421 (20%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-------- 56
           +++    I+ FR+      +   Q T  +G N  GK+N+L A+  L+P  G         
Sbjct: 1   MRLASFQITNFRSINDSGPIDSTQITAILGRNDSGKSNLLRALHSLNPAEGLVELSPIKD 60

Query: 57  --RRASYADVTRIGSPSFFSTFARVEGME---------GLADISIKLETRDDRSVRCLQI 105
             R     +    G     ST   ++  E           +D+      R   + R   +
Sbjct: 61  FPRHRRLEEC--QGDTPVVSTRWALDDNERAELKAILPRASDVRHVTAGRGYAATRWTGL 118

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRR-- 157
             +    +D  +   ++  +VP++      ++   R  L++   A D      P + R  
Sbjct: 119 EGLGELSLDVSDIKGKVRKIVPAVKAAAEKVAEAARATLEQEADAFDAAMIPSPDYIRWS 178

Query: 158 -----RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ----------MAELGVKINIA-- 200
                 +    R M   +  L++          +E            +A     +     
Sbjct: 179 EGAVKALQALRRAMAAADAELSDKQ--EQMLVELEDMAHAIANDTPALATAKQWVLEKLP 236

Query: 201 RVEMINAL-----SSLIMEYVQKENFPHIKLSLTGF--------LDGKFDQSFCALKEEY 247
           R   ++          I +Y+ ++ +         F        LD +  Q      ++ 
Sbjct: 237 RFVYVDEYPALPGRQNIADYLVRKGWGQATPEQRSFEKLCKVAGLDPQQLQELLEKNDQA 296

Query: 248 AKKLFDGR--------------KMDSMSRRTLIGPHRSDLIVDYCDK---AITIAHGSTG 290
            +     R                +   R  L GP+   L+ D        + +   S G
Sbjct: 297 TRNQLVNRAGSVVTSEIRRVWKDRELKVRFNLDGPYMDTLVSDPNGAYEVEVNLDERSRG 356

Query: 291 EQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMT 348
            Q          +    ++T G    ILLLDE   HL    +  L      D G+QI  T
Sbjct: 357 FQWFFSF-----YITFFADTRGAGDAILLLDEPGLHLHAHSQADLLAHFEHDFGNQIVYT 411

Query: 349 G 349
            
Sbjct: 412 T 412


>gi|212224221|ref|YP_002307457.1| chromosome segregation ATPase [Thermococcus onnurineus NA1]
 gi|212009178|gb|ACJ16560.1| chromosome segregation ATPase [Thermococcus onnurineus NA1]
          Length = 1188

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 55/162 (33%), Gaps = 24/162 (14%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
           I+ + +  F++Y    + +      T  VG NG GK+NI +A+ F+  G      R    
Sbjct: 4   IEKIEMKGFKSYGNRKVVVPLSKGFTAIVGANGSGKSNIGDAVLFVLGGLSAKAMRATRI 63

Query: 62  ADVTRIGSP-SFFSTFARVEGMEGLADISIKL---ETRDDRSVR-----CLQINDVVIRV 112
           +D+   G+     + +A V       D    +   E    R V         +N      
Sbjct: 64  SDLIFAGTKTEPPAKYAEVAMYFNNEDRGFPIDEDEVVIKRRVYPDGRSTYWLNGKRTSR 123

Query: 113 VDELNKHLRISWLVPSMDRI---------FSGLSMERRRFLD 145
            D L   L  + + P    +               ERR  +D
Sbjct: 124 SDIL-DVLSAAMISPEGYNLVLQGDITKFIKMSPTERRMIID 164



 Score = 36.4 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 278  CDKAITIAHG-STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
              K +      S GE+ +  +    A           AP  L DEI AHLD+     +  
Sbjct: 1063 AGKDVKRIEAMSGGEKALTALAFVFA-----IQRYKPAPFYLFDEIDAHLDDANVKRVAD 1117

Query: 337  IVTDI--GSQIFM 347
            ++ +    SQ  +
Sbjct: 1118 LIKEASENSQFIV 1130


>gi|207110977|ref|ZP_03245139.1| hypothetical protein HpylH_18109 [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 56

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+ +   ++    +  I  G N VGK+N+LEA+  L  G+ 
Sbjct: 2  IQSVRIKNFKTFKDTQIDGFTKLNIITGGNNVGKSNLLEALYCL-VGKS 49


>gi|196014315|ref|XP_002117017.1| hypothetical protein TRIADDRAFT_61013 [Trichoplax adhaerens]
 gi|190580508|gb|EDV20591.1| hypothetical protein TRIADDRAFT_61013 [Trichoplax adhaerens]
          Length = 830

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 7/138 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  +++L +       I +G NG GK+ I+  I     GR     R +S  +
Sbjct: 107 ILQIQLINFMCHSNLSMTLGGNVNIIIGRNGSGKSAIMTGIIICLSGRPSITNRASSLKE 166

Query: 64  VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
             +  +            G +         +   +R +R    +      +   N  L  
Sbjct: 167 FIKKDAKYARIIITLANNGPDAYRRKDFGPKIFLERQIRR---DGHSTCKLKSANAILTF 223

Query: 123 SWLVPSMDRIFSGLSMER 140
                    IF     +R
Sbjct: 224 IIFHLPRSNIFYNEKTKR 241


>gi|308460452|ref|XP_003092530.1| hypothetical protein CRE_25880 [Caenorhabditis remanei]
 gi|308253106|gb|EFO97058.1| hypothetical protein CRE_25880 [Caenorhabditis remanei]
          Length = 74

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 1  MTNRIKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISF 49
          +  +  +  L I  F++Y    L    ++ T  +G NG GK+N+++AISF
Sbjct: 10 LPGKGHLDTLEIENFKSYKGFHLIGPFSRFTAIIGPNGSGKSNLMDAISF 59


>gi|195144878|ref|XP_002013423.1| GL24134 [Drosophila persimilis]
 gi|194102366|gb|EDW24409.1| GL24134 [Drosophila persimilis]
          Length = 1119

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 95/268 (35%), Gaps = 16/268 (5%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62
           K+  +++  F  + S  + F       VG NG GK+  L A++    G      R AS  
Sbjct: 93  KVISIHLENFMCHESFTVEFGPNTNFLVGKNGSGKSATLTALTVGMGGNARATSRAASIT 152

Query: 63  DVTRIGSPSFFSTFAR-------VEGMEGLADISIKLETRDDRSVRCLQ--INDVVIRVV 113
            + + G  S               +       I++    R   S   L+     +V + +
Sbjct: 153 KLIKNGETSAKIEITLCNVGLSPFDAEHMGPHITVVRHIRQSSSSYELKDARGKIVSKKL 212

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           D++ + LR  + +   + IF       R FL ++    +     +    +  +   N  L
Sbjct: 213 DDVKRLLRR-FRIHVDNPIFVLNQEASREFLKKLEPKSNYTLLMKATQLDSCVNALNECL 271

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            +          +E +  ++  ++ +A  E +  L       +Q+ N     LS+    +
Sbjct: 272 VQRQSLHRALEHLELR-KQVSEQLVVAEEEKLATLRDKEAVKLQEANTKLAWLSVGQQEE 330

Query: 234 --GKFDQSFCALKEEYAKKLFDGRKMDS 259
                +QS   ++ + +K      + DS
Sbjct: 331 ELASCEQSIKLIEAKKSKLEAATIQKDS 358


>gi|188585991|ref|YP_001917536.1| chromosome segregation protein SMC [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350678|gb|ACB84948.1| chromosome segregation protein SMC [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 1191

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 95/287 (33%), Gaps = 36/287 (12%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62
           +K L +  F+++            T  VG NG GK+NI +AI   L     +  R     
Sbjct: 2   LKKLELVGFKSFPEKTTFELSDGITAVVGPNGCGKSNISDAIRWVLGEHRTKPLRGEKME 61

Query: 63  DVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIRVV 113
           D    G+      +       ++  +G   +    + ++ +  RS      +N    R+ 
Sbjct: 62  DFIFSGTQNKKAMNMAEVTLTLDNSQGHLGLDYDEVTIKRKYYRSGDSEYFLNKTPCRLK 121

Query: 114 DE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR-----HRRRMI 160
           D         L K          +D+I S    ERR   +     +  +       +R+ 
Sbjct: 122 DIQETFMDTGLGKDTYSIISQGEIDKILSASPYERRYLFEEASGILKHKTRKQEALKRLN 181

Query: 161 DFERL----------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
           D E            +  +   L +    +S    ++ +M +L V +   R++   A   
Sbjct: 182 DTEHNLSRVSDVIEELNQQLPPLKQQAERASKYKELKDKMMKLEVNLLAHRIDEKRAKWY 241

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            + E  ++      ++S          ++      +  K++   ++ 
Sbjct: 242 ELDETYKQIENNKEEISSQLRTIESELETIKTQLVDLEKEMEKQQQQ 288


>gi|46254789|gb|AAS86326.1| putative RecF [Klebsiella pneumoniae]
          Length = 210

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
            RI I+++ I  FR+   + L       I  G NG GK+NI  AI  L+
Sbjct: 16 AGRIMIQYIRIQNFRSVKDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 64


>gi|75908759|ref|YP_323055.1| ATPase-like protein [Anabaena variabilis ATCC 29413]
 gi|75702484|gb|ABA22160.1| ATPase-like protein [Anabaena variabilis ATCC 29413]
          Length = 419

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/416 (15%), Positives = 130/416 (31%), Gaps = 93/416 (22%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS-PGRGFRR----ASY 61
           +K L +  ++++    L  D   T+ +G N  GK+N++EA+ FL    RG       A  
Sbjct: 2   LKQLILENWKSFRYAELPLDP-LTVLIGTNASGKSNVVEALEFLQRIARGENVEAALAGD 60

Query: 62  ADV--TRIG-------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-------I 105
             +   R G         + F+    ++G +   D    ++ +    VR +Q       I
Sbjct: 61  KTLVSIRGGVEWAARKQETGFTLQTLIQGEDETQDYLYTVQIQTIPEVRVIQEQITFENI 120

Query: 106 NDVVI--------------------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           N   +                      ++       +    P    I  G          
Sbjct: 121 NQDNVVYNKKHLTVKNPIFPTKSGLENLELHVDINDLMQFFPPDQNILLG---------- 170

Query: 146 RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
                 D      +     L+  RN+              +                 + 
Sbjct: 171 ------DKDFLETLN--NVLLPFRNKACKFVVASLKNIFILNP-----IASNMRNYSRLA 217

Query: 206 NALSSLI------MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
           + L S        +  +  +    I+L+L+ ++    D     +K+ +A+K+        
Sbjct: 218 DDLESDASNIAGVLAALPDDLKLEIELTLSTYI---KDLPEGDIKKVWAEKVGRFGTDAM 274

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
           +  +    P  S          I     S G  + + +        L++   G   +  +
Sbjct: 275 LYCQEEWKPGHS--------TDIDARSMSDGTLRFLAI-----LTALLTRPEGSQIV--I 319

Query: 320 DEISAHLDEDKRNALFRIVTDIGSQ----IFMTGTDKSVFDSLNETAKFMRISNHQ 371
           +EI   L   +   L +I+ +IGS+    I +T  + ++ D+L        +  H+
Sbjct: 320 EEIDNGLHPSRAKLLVKILREIGSKRNIDILLTTHNPALLDALGPDTVPFVVVAHR 375


>gi|307944885|ref|ZP_07660222.1| DNA repair protein RecN [Roseibium sp. TrichSKD4]
 gi|307771809|gb|EFO31033.1| DNA repair protein RecN [Roseibium sp. TrichSKD4]
          Length = 556

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 24/162 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + I+ + + +      L L F    ++  G+ G GK+ +L++++    GRG     
Sbjct: 1   MLANLAIRDIVLID-----RLDLEFSEGMSVLTGETGAGKSILLDSLALALGGRG----- 50

Query: 61  YADVTRIGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
            AD+ R G                   TF     +   +D+ ++     D   R    + 
Sbjct: 51  DADLVRHGERQGQVTAVFDVPMAHPVRTFLSENDISDDSDVILRRVQASDGRTRAFINDQ 110

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF 149
            V   +     +L +       DR         R  +D   +
Sbjct: 111 PVSAGLMRQAGNLLVEIHGQHDDRALV-DPESHRELVDLFGW 151


>gi|315585961|gb|ADU40342.1| conserved hypothetical protein [Helicobacter pylori 35A]
          Length = 382

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          IK + I  ++N+  L++        F G N  GKTN+LEA+  
Sbjct: 2  IKSVEIENYKNFKHLKMENFKLINFFTGQNDTGKTNLLEALYI 44


>gi|282879822|ref|ZP_06288551.1| DNA repair protein RecN [Prevotella timonensis CRIS 5C-B1]
 gi|281306332|gb|EFA98363.1| DNA repair protein RecN [Prevotella timonensis CRIS 5C-B1]
          Length = 553

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 87/261 (33%), Gaps = 26/261 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  F     + ++F    ++  G+ G GK+ IL A+  L   R     +     R
Sbjct: 2   LKQLYIQNFTLIDEMNILFHPGFSVITGETGAGKSIILGALGLLKGNR-----ADTKQIR 56

Query: 67  IGSPSFFST-------------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G                    F   +  +   D  ++ E   +   R   IND      
Sbjct: 57  QGEERCVIEAHFDIRQYDLKDFFLENDLDDDPHDCILRREININGKSRAF-INDTPASLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGR 169
           V+ +L +  R+  +      +       +   +D +    D   +++     +++     
Sbjct: 116 VMKDLGE--RLIDIHSQHQNLLLNKEDFQLHVVDILTKDEDTLRKYQESYQKYKKEQTKL 173

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
             ++ +   D      +  Q+ EL    ++    E++    S +    + ++  ++  +L
Sbjct: 174 EEMIAKVSKDQENEDYLRFQLQELSDAALSEGEQEILEQEISTLEHAEEIKSALYLSQNL 233

Query: 229 TGFLDGKFDQSFCALKEEYAK 249
                    ++   + ++  K
Sbjct: 234 ISNESNGIIETLNQVSQQLQK 254


>gi|238019299|ref|ZP_04599725.1| hypothetical protein VEIDISOL_01163 [Veillonella dispar ATCC 17748]
 gi|237863998|gb|EEP65288.1| hypothetical protein VEIDISOL_01163 [Veillonella dispar ATCC 17748]
          Length = 554

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/421 (14%), Positives = 136/421 (32%), Gaps = 70/421 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + + F+   TIF G+ G GK+ +++A S L    G R +S  +  R
Sbjct: 2   LTQMSIRNFALIEQMNISFNDGITIFTGETGAGKSILMDAFSILL---GERASS--EFIR 56

Query: 67  IGSPSF-------FSTFARVEGMEGLADISIK-----LETRDDRSVRCLQI-NDVVI--R 111
            G  SF        +    ++ +    +I ++     L    +R+ +   + ND  I  +
Sbjct: 57  HGKDSFVIDGIFDIADHQSIQELLESKNIMVEEGELILSRSFNRNGKSTILANDQPIPLK 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLS-MERRRFLDRMVFAIDPRHRRRMIDFERLMR--- 167
            + E+ ++L       S  R+    +  E     ++        +      +++  +   
Sbjct: 117 ALKEIGQYLADIHGQYSNQRLLDADTHHEYLDTYNKEGQKAYKTYLDAYKVYKKAKQDVD 176

Query: 168 --GRNRLLTEGYFD--SSWCSSIEAQMAELGVKINI----ARVEMINALSSLIMEYVQKE 219
               N        D        IE     +G  ++I     R++    +  ++       
Sbjct: 177 HLQENMSERARELDMLRYQIDEIEEAGLTIGEDVSIAEELKRLDGFEHIDKVLGSCYDAF 236

Query: 220 NFPH---------IKLSLTGFL--DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
                        IK+ +   +  DG+  +    +   Y +     + +D          
Sbjct: 237 YNGRQPLLDTINSIKVEVNDLVKYDGELKEVSEMVDSAYFQLEEAAQSLDRYRDTISY-- 294

Query: 269 HRSDLIVDYCDKAITIAHG---STGEQKVVLVG------IFLAHARLISNTTGFAPILLL 319
              +    YC    T  +G     GE    ++         LA    +        +   
Sbjct: 295 --DEERYKYCQDRDTTIYGLKKKYGETVEEILAYEEKAQARLAELEGL--------VFAQ 344

Query: 320 DEISAHLDEDKRNA-----LFRIVTDIGSQIFMTGTDKSVFDSLNETAKF-MRISNHQAL 373
           DE+ A L+E K+ A     + R +    +++      + + D      +    I +   L
Sbjct: 345 DELEARLEEAKKVAEEALTVLRDIRLKNAKVIANALHQELVDLGMPKGEIQFHIEDGDGL 404

Query: 374 C 374
            
Sbjct: 405 S 405


>gi|170108557|ref|XP_001885487.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164639649|gb|EDR03919.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 340

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 27/217 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+++ + +F  +  L   F  Q     G NG GK+  L A++    G+     R +    
Sbjct: 67  IEYIEMRQFMCHKYLTFHFGPQINFITGHNGSGKSAALSALTVALGGKANSTGRGSGIKS 126

Query: 64  VTRIGSP-SFFSTFARVEGMEGLAD--------ISIKLETRDDRSVRCLQINDVVIRV-- 112
             R G   S  +   + +G E            I+ +       S +    +  VI    
Sbjct: 127 FIREGQSVSEVTIHLKNQGEEAYKTTEYGKTIVITRRFTKEGGSSWKIKSKDGKVISTKK 186

Query: 113 --VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH------RRRMID-FE 163
             +  +  H+ I    P    + +  S   R+FL         +         R+ D ++
Sbjct: 187 EELAAICDHMNIQVDNP--MNVLTQDSA--RQFLSASHPQDKYKFFLRGTQLSRLSDEYD 242

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
             +    +       +      +  + AE   +   A
Sbjct: 243 TCLENITQTAKVLAQNKEALLDLRTRFAEASARYQEA 279


>gi|238814369|ref|NP_001154944.1| structural maintenance of chromosomes 3 [Nasonia vitripennis]
          Length = 1203

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
          + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1  MYIKQVIIQGFKSYREQTVVEPFDPRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60

Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLET 94
                         A VE +   +D  + ++ 
Sbjct: 61 RQGLLHEGTGPRVISAHVEIIFDNSDGRLPIDK 93



 Score = 36.4 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 277  YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
            +  +   +   S G++ +V +    A           AP  L DEI   LD   R A+  
Sbjct: 1091 HKGEMREMNQLSGGQKSLVALANIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVAD 1145

Query: 337  IVTDIGSQI-FMTGTDKSVFDSLNETAKFMRIS 368
            ++ ++ S+  F+T T     + L    KF  + 
Sbjct: 1146 MIHELSSEAQFITTT--FRPELLQHANKFYGVK 1176


>gi|15839147|ref|NP_299835.1| chromosome segregation protein [Xylella fastidiosa 9a5c]
 gi|9107770|gb|AAF85355.1|AE004063_4 chromosome segregation protein [Xylella fastidiosa 9a5c]
          Length = 1167

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 93/281 (33%), Gaps = 23/281 (8%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPATLHLPTNMTCIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             DV   GS +      A VE +   +D +I  E     +   + +   V R    +   
Sbjct: 61  LTDVIFSGSSARKPVAQATVELIFDNSDHTISGEFA---AFNEISVKRTVSRDGSSVYSL 117

Query: 120 LRISWLVPSMDRIFSGLSMERRRFL---DRMVFAI-------DPRHRRRMIDFERLMRGR 169
                    +  +F G  +  R +      M+  I          +        +    R
Sbjct: 118 NGTKCRRRDITDLFLGTGLGPRSYSIIEQGMISQIIEARPEDLRIYLEEAAGISKYKERR 177

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENFPHIKLSL 228
               +           +     E+G ++ ++ R          + E  + ++     L  
Sbjct: 178 KETESRIRHTQENLDRLNDLREEIGKQLEHLKRQARQAEQYQTLQEERRVKDAECKALQF 237

Query: 229 TGFLDGKFDQSFCALKEE---YAKKLFDGRKMDSMSRRTLI 266
              LD +      AL +E     + L + R+ +     + +
Sbjct: 238 R-ELDIRLQALRQALLQEETRLQQLLAEQREAEMRIETSRV 277


>gi|1103893|gb|AAB42143.1| chromosome scaffold protein [Emericella nidulans]
          Length = 1211

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 27/260 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + +K + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGME---------GLADISIKLETRDDRSVRCLQINDVVIRV 112
                          A VE +          G  ++ ++      +    L   +     
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSDERFPTGKPELVLRRTIGLKKDEYTLDRKNATKND 120

Query: 113 VDELNKHLRISWLVPSMD-------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
           V  L +    S   P           + +    ER   L  +       +  R  +  ++
Sbjct: 121 VMNLLESAGFSRSNPYYIVPQGRVTALTNMKDSERLNLLKEVAGT--QVYEARRAESLKI 178

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           M   N        D      I  ++AEL  + +  R           +EY     +   +
Sbjct: 179 MHETNS--KREKIDE-LLDFINERLAELEEEKDELRNFQEKDKERRCLEYTI---YSREQ 232

Query: 226 LSLTGFLDGKFDQSFCALKE 245
             +  FLD   +Q    +++
Sbjct: 233 QEIASFLDSLEEQRQTGVED 252



 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 279  DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            D    I   S G++ +  + +  A           AP  L DEI A+LD   R A+ +++
Sbjct: 1101 DDQQRIQQLSGGQKSLCALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQML 1155

Query: 339  T----DIGSQIFMTG 349
                     Q   T 
Sbjct: 1156 KTISDSTNGQFICTT 1170


>gi|258645804|ref|ZP_05733273.1| putative cell division protein Smc [Dialister invisus DSM 15470]
 gi|260403174|gb|EEW96721.1| putative cell division protein Smc [Dialister invisus DSM 15470]
          Length = 1185

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF--RRAS 60
           +K+  L +  F+++A    + F    T+ VG NG GK+NI +A+   L        R   
Sbjct: 1   MKLLRLILQGFKSFADKTTIEFADGMTVIVGPNGCGKSNISDAVRWVLGEQNVHNLRGQK 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             D+   G+        A V  +   +      +T +    R +  N  
Sbjct: 61  TEDIIFSGAEGRNPKNAAEVTMVLDNSAHEFSFDTAEVSITRRVLRNGE 109


>gi|303315385|ref|XP_003067700.1| SMC family, C-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240107370|gb|EER25555.1| SMC family, C-terminal domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
          Length = 1569

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 16/117 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 362 PRMVITHLVLTNFKSYAGRQVVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 418

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQIN 106
                   +    +      F  VE               I   ++   S R  + N
Sbjct: 419 MRQGKISALIHNSANFPNLPFCEVEVHFQEVLDLPGGGHEIVENSQLVVSRRAFKNN 475


>gi|189426540|ref|YP_001953717.1| chromosome segregation protein SMC [Geobacter lovleyi SZ]
 gi|189422799|gb|ACD97197.1| chromosome segregation protein SMC [Geobacter lovleyi SZ]
          Length = 1177

 Score = 51.8 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +KIK L I+ F+++A  + L F    T  VG NG GK+NI++A+ +       +  R  +
Sbjct: 1  MKIKRLEIAGFKSFADKVVLDFQQGVTGVVGPNGCGKSNIVDAMRWCMGEQSAKNLRGKA 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFAGSDS 71


>gi|320163616|gb|EFW40515.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 952

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +  L +  F+ +  +         I VG NG GKT +L A   L   RG     R + Y
Sbjct: 250 LHRLRLQNFKKFEDITFTLTPSPKIIVGANGSGKTQVLWA--TLIFLRGHNARVRTSRY 306


>gi|259418018|ref|ZP_05741937.1| ATPase [Silicibacter sp. TrichCH4B]
 gi|259346924|gb|EEW58738.1| ATPase [Silicibacter sp. TrichCH4B]
          Length = 434

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + I  L +  F+ + +     + + T+ VG NGVGK++IL+A+S 
Sbjct: 1  MHIDRLIVQNFKGFENFDQRLNCRFTLIVGKNGVGKSSILDALSV 45


>gi|257052782|ref|YP_003130615.1| SMC domain protein [Halorhabdus utahensis DSM 12940]
 gi|256691545|gb|ACV11882.1| SMC domain protein [Halorhabdus utahensis DSM 12940]
          Length = 584

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +++  ++I  FR+     +       + +G N  GK+NI++AI 
Sbjct: 1  MQVTEIDIENFRSIPETSIGLGD-FNLLIGKNNAGKSNIVKAIY 43


>gi|320035464|gb|EFW17405.1| nuclear condensin complex subunit Smc4 [Coccidioides posadasii str.
           Silveira]
          Length = 1569

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 16/117 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 362 PRMVITHLVLTNFKSYAGRQVVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 418

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQIN 106
                   +    +      F  VE               I   ++   S R  + N
Sbjct: 419 MRQGKISALIHNSANFPNLPFCEVEVHFQEVLDLPGGGHEIVENSQLVVSRRAFKNN 475


>gi|300214354|gb|ADJ78770.1| DNA repair protein [Lactobacillus salivarius CECT 5713]
          Length = 555

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 25/177 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F     +++ F  + T+  G+ G GK+ I++A+  L+ GRG       +  R
Sbjct: 2   LQELSIKDFAIIDEIQISFQPKMTVLTGETGAGKSIIIDALGLLAGGRG-----STEFIR 56

Query: 67  IGSPSFFSTFARV------------EGMEGLADISIKLETRDDRSVRCL-QIND--VVIR 111
            G                       E      D  I L+    R  R + +IN   V + 
Sbjct: 57  KGEKKAVIQGLFTLPREANTYNILEEYGIDSEDGQIILQRDLYRGGRNICRINGMMVNLA 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR---MVFAIDPRHRRRMIDFERL 165
            + ++ + L           +           LD        +  +++    ++ +L
Sbjct: 117 TLRKVGETLIDIHGQNEHQELMK--PENHIDLLDEYDKKTSQLRNQYQVVYQNYRKL 171


>gi|284040659|ref|YP_003390589.1| SMC domain protein [Spirosoma linguale DSM 74]
 gi|283819952|gb|ADB41790.1| SMC domain protein [Spirosoma linguale DSM 74]
          Length = 369

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS---FLSPGRGF 56
          +K ++I  F++   + L    +  + +G N  GKTN L+A+    +   G  F
Sbjct: 2  LKRVSIQNFKSLKDVTLDLQ-KVNLLIGPNNSGKTNFLKALEFFDYAVLGDSF 53


>gi|303277097|ref|XP_003057842.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460499|gb|EEH57793.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1073

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 14/81 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
           +K+K   ++ F  + +L +    +    VG+NG GK+ +L AI  L+ G   +  + +D 
Sbjct: 29  MKVK---VTNFMCHHNLEVDLGPRINFIVGENGSGKSAVLTAIC-LALGTKAKNTNRSDK 84

Query: 64  ----VTRIGSPSFFSTFARVE 80
                 R G+     TFA++E
Sbjct: 85  GIKGFIREGA-----TFAKLE 100


>gi|145347925|ref|XP_001418410.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578639|gb|ABO96703.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1224

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 3  NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
           R+ IK + +  F++YA  +    F    +  VG NG GK+N+++A+ F+     +  R 
Sbjct: 12 PRLAIKKMVLENFKSYAGAQHVGPFHKSFSSVVGPNGSGKSNVIDAMMFVFGKRAKQLRL 71

Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLA 86
             +++    +       ARVE      
Sbjct: 72 NKVSELIHNSTDFRNLEHARVEVHFHEI 99


>gi|237755958|ref|ZP_04584546.1| conserved hypothetical protein [Sulfurihydrogenibium
          yellowstonense SS-5]
 gi|237691883|gb|EEP60903.1| conserved hypothetical protein [Sulfurihydrogenibium
          yellowstonense SS-5]
          Length = 350

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          K   I  F+N+ SL L    +  + +G N  GK+++LEAI
Sbjct: 3  KSFTIKNFKNFKSLELNDLERVNLIIGKNNSGKSSLLEAI 42


>gi|217077222|ref|YP_002334940.1| chromosome segregation SMC protein, putative [Thermosipho africanus
           TCF52B]
 gi|217037077|gb|ACJ75599.1| chromosome segregation SMC protein, putative [Thermosipho africanus
           TCF52B]
          Length = 1155

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 6/115 (5%)

Query: 6   KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASY 61
           K+K + I+ F+++   +++    + T  VG NG GK+NI+EAI ++      +  R +  
Sbjct: 4   KLKEIYINGFKSFGRPVKIPISPRITAIVGPNGSGKSNIVEAIQWVFGEHSLKQLRASEK 63

Query: 62  ADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVIRVVD 114
            D+   G+  +  +  A VE          K+  + D S      +N    R+ D
Sbjct: 64  FDMIFKGNGKTPSARSAFVELTFDFNGREYKIARKLDASGENTYYLNGESARLKD 118


>gi|242021385|ref|XP_002431125.1| structural maintenance of chromosome, putative [Pediculus humanus
          corporis]
 gi|212516374|gb|EEB18387.1| structural maintenance of chromosome, putative [Pediculus humanus
          corporis]
          Length = 1206

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 3/93 (3%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
          + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1  MYIKQVIIQGFKSYREQTVVEPFDHRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60

Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLET 94
                         A VE +   +D  I +E 
Sbjct: 61 RQALLHEGTGPRVMTAYVEILFDNSDGRIPIER 93



 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + +  A           AP  L DEI   LD   R A+  ++ ++     F
Sbjct: 1105 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVADMIHELSKTAQF 1159

Query: 347  MTGTDKSVFDSLNETAKFMRIS 368
            +T T     + L    KF  + 
Sbjct: 1160 ITTT--FRPELLEHAHKFYGVK 1179


>gi|195573343|ref|XP_002104653.1| GD21061 [Drosophila simulans]
 gi|194200580|gb|EDX14156.1| GD21061 [Drosophila simulans]
          Length = 429

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|126729263|ref|ZP_01745077.1| DNA repair protein RecN [Sagittula stellata E-37]
 gi|126710253|gb|EBA09305.1| DNA repair protein RecN [Sagittula stellata E-37]
          Length = 550

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 49/303 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRALEIRDMLIIDRLDLDFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIK--------------LETRDDRS---VRCLQINDVV 109
            G+             +  A   ++              + T D R        +++  V
Sbjct: 57  AGAEQGEVVAVFDLAPDHAARGVLEEAGLPAGDELILRRVNTADGRKTGWANDRRVSGDV 116

Query: 110 IRVVDE-----LNKHLRISWLVPS------MDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
           +R + +       +H     L P        D   +G      R   R +          
Sbjct: 117 LRRLSDTLVELHGQHDDKGLLDPKGHRAILDDYAVAGDLQAEVRDAWRALATARKGLADA 176

Query: 159 MIDFERL------MRGRNRLLTEGYFDSSWCSSIEAQ--MAELGVKINIARVEMINALSS 210
               + +      +R     L     +     ++++Q  M +   KI   R +++ A   
Sbjct: 177 QKAMDAVRAEEGFLRHSVAELETLAPEEGEEEALDSQRRMMQAAEKI---REDIVQA--- 230

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
                +  E       S   +LDG  D++   L            ++D  +R        
Sbjct: 231 --SAALGYEGAEGAMSSALRWLDGAADKASGRLDAPIEALARAMAELDEAARGVAECLDA 288

Query: 271 SDL 273
            D 
Sbjct: 289 LDF 291


>gi|326470448|gb|EGD94457.1| nuclear condensin complex subunit Smc4 [Trichophyton tonsurans CBS
           112818]
          Length = 1431

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 16/119 (13%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           R+ I  L ++ F++YA  +    F A  +  VG NG GK+N+++++ F+    GFR +  
Sbjct: 224 RMVITHLVLTNFKSYAGQQYVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASKM 280

Query: 62  AD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
                  +    +      F  VE               +  +++   S R  + N   
Sbjct: 281 RQGKISALIHNSANFPNLPFCEVEVHFQEIIDLPDGGHEVVPDSQLVVSRRAFRNNSSK 339


>gi|253573488|ref|ZP_04850831.1| chromosome segregation protein SMC [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251847016|gb|EES75021.1| chromosome segregation protein SMC [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 1190

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K + ++ F+++A    + F    T  VG NG GK+NI + I ++      +  R   
Sbjct: 1   MFLKRIELAGFKSFADKTEMEFVRGITAVVGPNGSGKSNISDGIRWVLGEQSAKSLRGGK 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             D+   GS +     ++ V       D ++ L+  +    R +         IN    R
Sbjct: 61  MEDIIFAGSDARKAVNYSEVSLTLDNTDQALPLDFSEVTVTRRVHRSGDSEYFINKQPCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|255732057|ref|XP_002550952.1| hypothetical protein CTRG_05250 [Candida tropicalis MYA-3404]
 gi|240131238|gb|EER30798.1| hypothetical protein CTRG_05250 [Candida tropicalis MYA-3404]
          Length = 1377

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            R+ I+ L ++ F++YA  ++   F    +  VG NG GK+N+++++ F+   R    R+
Sbjct: 146 PRLVIRQLALTNFKSYAGTQIIGPFHPSFSSVVGPNGSGKSNVIDSMLFVFGFRASKMRQ 205

Query: 59  ASYADVTR 66
              +++  
Sbjct: 206 GKLSELIH 213


>gi|15920330|ref|NP_375999.1| hypothetical protein ST0153 [Sulfolobus tokodaii str. 7]
 gi|15621112|dbj|BAB65108.1| 339aa long conserved hypothetical protein [Sulfolobus tokodaii
          str. 7]
          Length = 339

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  + I  FR     +L   +Q  I +G N  GK+ ILEAI F+S  
Sbjct: 2  INEIEIQNFRGIKYCKLESLSQINILIGRNNSGKSTILEAIYFISSL 48


>gi|325567925|ref|ZP_08144426.1| ATP-dependent OLD family endonuclease [Enterococcus casseliflavus
          ATCC 12755]
 gi|325158399|gb|EGC70549.1| ATP-dependent OLD family endonuclease [Enterococcus casseliflavus
          ATCC 12755]
          Length = 373

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI--SFLSPGR 54
          +KIK + I  FR    +++ F+   T F+G NG GK++I+ A+   F + G+
Sbjct: 1  MKIKSVKIKNFRALRDVQIGFED-ITTFIGPNGAGKSSIMYALDWFFNAYGK 51


>gi|218550116|ref|YP_002383907.1| hypothetical protein EFER_2804 [Escherichia fergusonii ATCC
          35469]
 gi|218357657|emb|CAQ90298.1| conserved hypothetical protein [Escherichia fergusonii ATCC
          35469]
          Length = 682

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 1  MTNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M   + +  L I  FR +     +  +   ++ VG+NG GK+ I+ +I  L
Sbjct: 43 MVTHMFLSKLKIKGFRCFNDEFNISLNEGLSVIVGENGAGKSAIINSIRQL 93


>gi|156094454|ref|XP_001613264.1| chromosome condensation protein [Plasmodium vivax SaI-1]
 gi|148802138|gb|EDL43537.1| chromosome condensation protein, putative [Plasmodium vivax]
          Length = 1455

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
           +RI I  L +  F++Y+ +++   F  + +  VG NG GK+NI++A+ F+     +  R+
Sbjct: 54  SRIIIDRLVLENFKSYSGVKVIGPFYKKFSCIVGPNGSGKSNIIDAMLFVFGRRAKKIRQ 113

Query: 59  ASYADVTR 66
              +D+  
Sbjct: 114 NKLSDLIH 121


>gi|326478631|gb|EGE02641.1| chromosomes protein 4 structural maintenance [Trichophyton equinum
           CBS 127.97]
          Length = 1431

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 16/119 (13%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           R+ I  L ++ F++YA  +    F A  +  VG NG GK+N+++++ F+    GFR +  
Sbjct: 224 RMVITHLVLTNFKSYAGQQYVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASKM 280

Query: 62  AD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
                  +    +      F  VE               +  +++   S R  + N   
Sbjct: 281 RQGKISALIHNSANFPNLPFCEVEVHFQEIIDLPDGGHEVVPDSQLVVSRRAFRNNSSK 339


>gi|223938582|ref|ZP_03630473.1| conserved hypothetical protein [bacterium Ellin514]
 gi|223892701|gb|EEF59171.1| conserved hypothetical protein [bacterium Ellin514]
          Length = 307

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTN 42
          +KI F+ I  FR   S+R+ F  + T+ VG N  GKT+
Sbjct: 1  MKITFVEIQNFRKLKSVRIDFSEKTTLLVGANNSGKTS 38


>gi|159119524|ref|XP_001709980.1| SMC3-like protein [Giardia lamblia ATCC 50803]
 gi|157438098|gb|EDO82306.1| SMC3-like protein [Giardia lamblia ATCC 50803]
          Length = 1231

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 8/133 (6%)

Query: 5   IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAI--SFLSPGRGFRRASY 61
           + +  + I  FR+     +        +F+G NG GK+N   AI  + + P    +  + 
Sbjct: 1   MYLSGVEIKNFRSIVHTSVTGLHPGINVFIGINGAGKSNFYSAILFALMDPLYDLKTINR 60

Query: 62  ADVTRIGSP---SFFSTFARVEG-MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           A +    +     +      +EG   G     + +      +     +NDV++   D++ 
Sbjct: 61  AQILSNDAKTKSGYVKLIIDLEGAAVGDFQGRVSISRHFTITTDSFYLNDVLV-TSDKVA 119

Query: 118 KHLRISWLVPSMD 130
             L I    PS  
Sbjct: 120 NFLSIMGFNPSSQ 132



 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 72/216 (33%), Gaps = 40/216 (18%)

Query: 161  DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
             ++R +R +++L  +         ++E  + +L V+  +   E    + +   E   +  
Sbjct: 1021 QYDRAVREKDQLEKQLADVVEGEHAVEDLVMKLDVRRKVHFEEQFKLVDARFSEIFHRIT 1080

Query: 221  FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
                +L+L+   D + D                             G         + ++
Sbjct: 1081 GGKARLTLSTHGDEEPD-----------------------------GILVD---ATFANQ 1108

Query: 281  AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
            A      S G++ +  +   LA     +        LLLDE  A LDE  R     ++ +
Sbjct: 1109 ATKDVQMSGGQRTLTSLCFVLA-----TEQASNNSFLLLDEPDACLDEAYRAVFASLLAE 1163

Query: 341  I---GSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
                G Q+F+      +    N+     R+ +H  +
Sbjct: 1164 RAAQGIQVFVITFRTEIITVANQCFAVSRVEDHTTI 1199


>gi|157148135|ref|YP_001455454.1| hypothetical protein CKO_03946 [Citrobacter koseri ATCC BAA-895]
 gi|157085340|gb|ABV15018.1| hypothetical protein CKO_03946 [Citrobacter koseri ATCC BAA-895]
          Length = 711

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL 50
          + I  L I  ++N+ S    F        +G+N  GKTN+  A+  +
Sbjct: 9  MYINKLAIRNYKNFRSSNFYFVKGSVNTIIGENASGKTNLFNAMRLI 55


>gi|119195457|ref|XP_001248332.1| DNA repair protein homolog [Coccidioides immitis RS]
          Length = 1126

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 61/177 (34%), Gaps = 28/177 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +  L +         VG NG GK+ +L A++    G+     R  S   
Sbjct: 86  IERVDCYNFMCHEHLSMELGPLINFIVGKNGSGKSAVLSALTICLGGKASATNRGQSLRK 145

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI------SIKLETRDDRSVRC-LQINDVVIRVVD-- 114
             + G  S  +   R++     A +      SI +E    +S     +I +   RVV   
Sbjct: 146 FIKEGKESA-TIVVRIKNQGDSAYLPNEFGRSITVERHFSKSGTSGFRIKNASGRVVSTK 204

Query: 115 -----------ELNKHLRISWLVPSMDR--IFSGLSMERRRFL--DRMVFAIDPRHR 156
                       L     ++ L   M R  + S    E+ RF      +  +D  + 
Sbjct: 205 RSDLDSITDYFALQIDNPMNVLTQDMARQFLSSSSPAEKYRFFVKGVQLEQLDQDYH 261


>gi|260907422|ref|ZP_05915744.1| hypothetical protein BlinB_18945 [Brevibacterium linens BL2]
          Length = 882

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 102/312 (32%), Gaps = 26/312 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYAD 63
           +K   +++  +R  A  R+ F    T+  G N VGK++I EAI+ L   +   R+AS  +
Sbjct: 1   MKFHSIHLRNYRGIADSRVEFGDGVTVVEGPNEVGKSSIHEAITHLREDKSSSRKASVKE 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
              +G  +       +   +       +   +    +  ++     +   D  ++ L I 
Sbjct: 61  TQPVGVDAGPEVELHLSTGDYELKYRKRWIKQPFTELSVIKPRPEQLSSDDAHDRFLSIL 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR------MIDFERLMRGRNR----LL 173
                +D + +    +        +  I   H         + D +  +           
Sbjct: 121 ADTVDVDLLVALDVAQGESLAQAPLAQIKALHSALSESGVEVADHDDFLDQVEAEYLKYF 180

Query: 174 TEGYFDSSWCSSIEAQ--MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           T+   ++     I AQ  + E   +    R   ++ L         +      +L+    
Sbjct: 181 TKSGRETGEYKDINAQVPVVEAAFEELRERSRGMDDLVDNHARAAARLKTVRTQLTQALA 240

Query: 232 LDGKFDQSFCALKEEYA-----------KKLFDGRKMDSMSRRTLIGPHRSD--LIVDYC 278
              + +Q+  A+ E  A            +  +    +++ RRT +    +D    V   
Sbjct: 241 DRDEAEQAAKAVAELKAVLDQAVDHAKSAQRDEQIAREALDRRTQLIADATDAQSAVTVA 300

Query: 279 DKAITIAHGSTG 290
            K +     + G
Sbjct: 301 GKTVAGLESAQG 312


>gi|28211237|ref|NP_782181.1| DNA repair protein recN [Clostridium tetani E88]
 gi|28203677|gb|AAO36118.1| DNA repair protein recN [Clostridium tetani E88]
          Length = 565

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  F     L + F+    +  G+ G GK+ I++AI+++  G+ F      ++ R
Sbjct: 2  LLQLNIKNFALIEELSISFERGFNVLSGETGAGKSIIIDAINYVLGGK-F----NKELIR 56

Query: 67 IGSP-SFFSTFARVEGM---EGLADISIKLE 93
           G   +F      +E     E L D +I+ E
Sbjct: 57 TGENKTFVEAIFTLENEMSKEELIDQNIEYE 87


>gi|300711973|ref|YP_003737787.1| chromosome segregation protein SMC [Halalkalicoccus jeotgali B3]
 gi|299125656|gb|ADJ15995.1| chromosome segregation protein SMC [Halalkalicoccus jeotgali B3]
          Length = 1195

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I+ L +  F+++    R+ F    T   G NG GK+NI++++ F   L+  RG R   
Sbjct: 1  MHIRALVLENFKSFGRKTRIPFYEDFTTVSGPNGSGKSNIIDSVLFALGLARARGIRAEK 60

Query: 61 YADVT 65
            D+ 
Sbjct: 61 LTDLI 65


>gi|291283973|ref|YP_003500791.1| hypothetical protein G2583_3286 [Escherichia coli O55:H7 str.
           CB9615]
 gi|290763846|gb|ADD57807.1| Hypothetical purine NTPase [Escherichia coli O55:H7 str. CB9615]
          Length = 773

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 1/107 (0%)

Query: 6   KIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           K+  L I+ F+ +  +   F  +      G NG GKT++ +A+  L  G+  R     + 
Sbjct: 5   KLSKLRINNFKAFDKVEFDFESSSLLTLEGPNGYGKTSVYDALELLFTGKIKRIVQLCET 64

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
              G    +S         G  DI I +E  +D + +         +
Sbjct: 65  IMPGGIKNYSDNLFWNKTNGEDDIEISVEMSNDNNEKLYFSRRAHAK 111


>gi|186477254|ref|YP_001858724.1| DNA repair protein RecN [Burkholderia phymatum STM815]
 gi|184193713|gb|ACC71678.1| DNA repair protein RecN [Burkholderia phymatum STM815]
          Length = 555

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 88/262 (33%), Gaps = 35/262 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALG----SRADASVVR 56

Query: 67  IGS---------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI- 110
            G                 ++    A   G     +  +     D        IN     
Sbjct: 57  TGEARADITAEFDTHALVDAWLDEQALAAGETEHGNTVMLRRVVDANGRSRAFINGTAAT 116

Query: 111 -RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
              + E+ + L       +   +       +R   D     +D      +    R  R  
Sbjct: 117 LTQLREVGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLLDTT--AAVNRAWRAWREA 172

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
            + +               ++A         ++  ++ LS    E+ ++ N  H +LS +
Sbjct: 173 VQAVETAQSKDRELQLERERLA--------WQLAELDKLSPQPGEW-EEVNTEHRRLSHS 223

Query: 230 GFLDGKFDQSFCALKEEYAKKL 251
             L      +  AL E     L
Sbjct: 224 ANLIDGVQGALSALSESDEAML 245


>gi|120610526|ref|YP_970204.1| ATPase-like protein [Acidovorax citrulli AAC00-1]
 gi|120588990|gb|ABM32430.1| ATPase-like protein [Acidovorax citrulli AAC00-1]
          Length = 409

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 16/108 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  +      +   + +      T+ VG N  GKTN +  + FL            D 
Sbjct: 1   MKLTRVEARHCFSLEDVGVDLSPGVTVLVGPNATGKTNFVRTLEFL-----------RDA 49

Query: 65  TRIGSPSFFST---FARVEGMEGLADIS--IKLETRDDRSVRCLQIND 107
            R G     +      R+    G ADI+  +++     +S +      
Sbjct: 50  VRDGLDHAVAARGGIGRLRQHSGEADITGLVEIGIHATQSFKKNANRH 97


>gi|332366061|gb|EGJ43817.1| DNA repair protein RecN [Streptococcus sanguinis SK1059]
          Length = 552

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 75/226 (33%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+P                      +G +   ++ I+ E          +IN  ++ + 
Sbjct: 57  HGAPKAEIEGLFSLENSRALREIFEKQGWDLTDELIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D+            LD         +  R++     +  L +  
Sbjct: 116 VLKAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGTADFLNLKGRYQETFDRYRSLRKKV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
             L        +    +E QMAE+          + ++  R  ++N
Sbjct: 176 LTLQKNQQEHKARIEMLEFQMAEIESAALKSGEDIALHQERDRLLN 221


>gi|308460860|ref|XP_003092729.1| CRE-DPY-27 protein [Caenorhabditis remanei]
 gi|308252566|gb|EFO96518.1| CRE-DPY-27 protein [Caenorhabditis remanei]
          Length = 1568

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 4   RIKIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRA 59
           R+ IK + +  F++Y        F    T+ +G NG GK+N+++AI F+   R    R  
Sbjct: 107 RMIIKDIYVDNFKSYRGRHQIGPFHKNLTMILGPNGSGKSNVIDAILFVFGFRAQKIRTK 166

Query: 60  SYADVTRIGSPSFFSTFARVE 80
             + +    S    S    + 
Sbjct: 167 KLSALI-HSSDECKSALVEIH 186


>gi|238054328|sp|Q00737|SUDA_EMENI RecName: Full=Chromosome segregation protein sudA; AltName:
           Full=DA-box protein sudA
          Length = 1215

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 27/260 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + +K + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGME---------GLADISIKLETRDDRSVRCLQINDVVIRV 112
                          A VE +          G  ++ ++      +    L   +     
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSDERFPTGKPELVLRRTIGLKKDEYTLDRKNATKND 120

Query: 113 VDELNKHLRISWLVPSMD-------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
           V  L +    S   P           + +    ER   L  +       +  R  +  ++
Sbjct: 121 VMNLLESAGFSRSNPYYIVPQGRVTALTNMKDSERLNLLKEVAGT--QVYEARRAESLKI 178

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           M   N        D      I  ++AEL  + +  R           +EY     +   +
Sbjct: 179 MHETNS--KREKIDE-LLDFINERLAELEEEKDELRNFQEKDKERRCLEYTI---YSREQ 232

Query: 226 LSLTGFLDGKFDQSFCALKE 245
             +  FLD   +Q    +++
Sbjct: 233 QEIASFLDSLEEQRQTGVED 252



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 279  DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            D    I   S G++ +  + +  A           AP  L DEI A+LD   R A+ +++
Sbjct: 1105 DDQQRIQQLSGGQKSLCALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQML 1159

Query: 339  T----DIGSQIFMTG 349
                     Q   T 
Sbjct: 1160 KTISDSTNGQFICTT 1174


>gi|227822642|ref|YP_002826614.1| DNA repair protein RecN [Sinorhizobium fredii NGR234]
 gi|227341643|gb|ACP25861.1| DNA repair protein RecN [Sinorhizobium fredii NGR234]
          Length = 557

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 88/271 (32%), Gaps = 40/271 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L FDA  ++  G+ G GK+ +L+++S    GRG        + R
Sbjct: 2   LAQLSIRDIVLIERLDLSFDAGLSVLTGETGAGKSILLDSLSLALGGRG-----DGSLVR 56

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G      T                  G++   D+  +     D   +    +  V   +
Sbjct: 57  HGEEKGQVTAVFDVPPGHSARLLLHDNGIDDDGDLIFRRVQSADGRTKAFINDQPVSVQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR-----HRRRMIDFERLM-R 167
                 + +       DR    +    R  LD      +         R   D ER + +
Sbjct: 117 MRQAGQVLVEIHGQHDDRALVDIDA-HRALLDAFGGTTEAAAETGVLYRAWRDTERGLKK 175

Query: 168 GRNR---------LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
            R R          L     +    +  + +  EL    + AR+  +  ++  I E  + 
Sbjct: 176 HRERVEAAAREADYLRSSVEELEALAPRDGEEEELAE--SRARMMKVERIAGDISEASEF 233

Query: 219 ENFPH----IKLSLTGFLDGKFDQSFCALKE 245
            N       +  SL   L+ K  ++   L+E
Sbjct: 234 LNGNASPVPLIASLVRRLERKSHEAPGLLEE 264


>gi|227501772|ref|ZP_03931821.1| ATP-dependent OLD family endonuclease [Corynebacterium accolens
           ATCC 49725]
 gi|227077797|gb|EEI15760.1| ATP-dependent OLD family endonuclease [Corynebacterium accolens
           ATCC 49725]
          Length = 607

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 109/344 (31%), Gaps = 52/344 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++   I  FR+     + F    T+ VG+N  GK+NI++A+   +     RR  + ++
Sbjct: 11  MWLESARIKGFRSCEKTEVEFCPDLTLLVGENNAGKSNIIDALRLATAPLSGRRTRFFEI 70

Query: 65  TRIGSPSF------FSTFARVEGMEGLADISIK-LETRDDRSVRCLQINDVVIRVVDELN 117
                PSF             EG E    + I  L+ +  +    ++      R      
Sbjct: 71  ---DDPSFGAGVNPDIELVYTEGDEFQQALFIGALDLQSKKIHHHVRYFSPTDRYPRGRT 127

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           + L      P  +                    I+  +   + D +R +   N     G 
Sbjct: 128 ERLAGLVASPDPESEVR--------------SKINHVYLEPLRDAKRELDSAN-----GR 168

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
              S    +  +           R E + +         ++ +       ++  +     
Sbjct: 169 RLGSVLRYLLDE---------KEREEFLQS----AHTATEQLSGSGAIQGVSKKIQEHLS 215

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA-HGSTGEQKVVL 296
               A++ +     F+   +D ++R          L +   +K I +    S+G     L
Sbjct: 216 SLTDAVRGQQVALGFEKPSLDHLARG---------LRLKMAEKGIDVTNLASSGLGYANL 266

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
           + +      L         +LL++E  AHL    +  L   + +
Sbjct: 267 LFMSTILLELQEANQSELTLLLVEEPEAHLHPQLQGVLLDFLLE 310


>gi|117620508|ref|YP_854975.1| hypothetical protein AHA_0445 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561915|gb|ABK38863.1| conserved hypothetical protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 632

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + I+ + I+ FR+     +  +   T FVG N  GK+N+L A++    G+     +
Sbjct: 1   MVYVM-IRQITITNFRSIRKETISTEE-ITTFVGKNDAGKSNLLRALNLFFNGK---TDA 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
             D       S F+  A V+      +I ++L  +  RS R 
Sbjct: 56  DTD---YNFQSDFNINAIVQ-QRKAKEIKVELVLKLPRSYRK 93


>gi|116688230|ref|YP_833853.1| ATP-dependent OLD family endonuclease [Burkholderia cenocepacia
          HI2424]
 gi|116646319|gb|ABK06960.1| ATP-dependent endonuclease of the OLD family-like protein
          [Burkholderia cenocepacia HI2424]
          Length = 689

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K++ + I  FR  + + L  +   T+ VG N  GKT++ E I  L
Sbjct: 1  MKLRHVQIKNFRLLSDVDLALEDLTTVVVGRNNSGKTSLSEVIRRL 46


>gi|313124100|ref|YP_004034359.1| recn, ATPase involved in DNA repair [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312280663|gb|ADQ61382.1| RecN, ATPase involved in DNA repair [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 562

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 67/215 (31%), Gaps = 37/215 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  Q T+ +G+ G GK+ +++A+S L    G R     ++ R
Sbjct: 2   LVELDIQNFAIIKSLKIKFQPQMTVLIGETGAGKSILIDALSLLL---GHRAQK--EMVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADIS---------------IKLETRDDRSVRCLQINDV--V 109
            G      T       E + ++                I       +    ++IN     
Sbjct: 57  SGQSKAVVTGLFTLQDEEMREVEQIADDYGLPMDGDDLIISREISSKGRNVIRINGQLTT 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGL---------------SMERRRFLDRMVFAIDPR 154
           I  + ++ ++L           +                    +  +   +   +    +
Sbjct: 117 ITALAKIGEYLVDIHGQNDQQMLMDQSRQIDLVDEYAGKDFKPLLCKYQAEYQTWQRLNQ 176

Query: 155 HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
               +    R +  R  +L     + +     + Q
Sbjct: 177 RLEHLRRDSRELAQRQDILQFQVEELTQADLTDEQ 211


>gi|299470718|emb|CBN79764.1| similar to Structural maintenance of chromosome 3 [Ectocarpus
          siliculosus]
          Length = 1388

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASL-RLV-FDAQHTIFVGDNGVGKTNILEAISF 49
          + IK +++S FR++ S   +  F  +H + VG NG GK+N  +AI F
Sbjct: 1  MHIKQVSMSGFRSFRSQPEIESFSPRHNVIVGRNGSGKSNFFDAIQF 47


>gi|299534460|ref|ZP_07047793.1| hypothetical protein BFZC1_00460 [Lysinibacillus fusiformis ZC1]
 gi|298730088|gb|EFI70630.1| hypothetical protein BFZC1_00460 [Lysinibacillus fusiformis ZC1]
          Length = 445

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 77/424 (18%), Positives = 132/424 (31%), Gaps = 96/424 (22%)

Query: 6   KIKFLNISEFRNYASLRLVFD--------AQHTIFVGDNGVGKTNILEAISFLSPGRG-- 55
           KIK +N+   RN     +V          A      G NG GKT I++A S L       
Sbjct: 5   KIKKINLQNLRNVRQGEIVLAVNFETFLQANVVGLYGQNGSGKTTIVDAFSLLKTLLSGW 64

Query: 56  ----FRRASYADVTRIGSPSF-----------FSTFAR---VEGMEGLADISIKLET--- 94
                  +    +   G  +            F TF     VE  E    +   LE    
Sbjct: 65  LAEVKLPSQKKRLILAGEQTASLDVEFLVQNQFGTFFVNYYVELQEDQHRLYTTLERLTY 124

Query: 95  RDDRSVRCLQI------NDVVIR--VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146
           R++   +  +I       DV IR   +D+L++  RI  LV              R+    
Sbjct: 125 RENTKGKRSKILVAVSERDVQIRQSKLDDLSEQARIQLLVIQQLA---------RKQYMS 175

Query: 147 MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
            +F           D + L++ R              S +E Q+ +         + ++N
Sbjct: 176 FLFH---------KDIKALLQER-------------LSELEMQLLQNIAVDFSRDLHVVN 213

Query: 207 ALSSLIMEYVQKENFP-HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM------DS 259
             +  I    ++   P  I L  T  L          L E+    L +  +         
Sbjct: 214 --TQNIAPLFEERMMPFSIHLEKTRGLIPYDLNGPALLPEDGFYALCEVIEQSNQVLSAI 271

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGST-GEQKVVLV-----GIFLAHAR--LISNTT 311
           +   T+     +  ++D  ++ I     S  GEQ++ L       + +      LI+   
Sbjct: 272 IPGLTIKINIITKQMMDNGEQGIRFEFLSQRGEQELPLRTESEGILKIISILSVLIAVYN 331

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIV-----TDIGSQIFMTGTDKSVFDSLNETAKFMR 366
                +++D     LD      L   +      D   Q+  T  +  V + L     +  
Sbjct: 332 NPNACVVID----ELDSGVFEYLLGELLTVIDEDGKGQLIFTSHNLRVLEVLAIKNLWFT 387

Query: 367 ISNH 370
            +N 
Sbjct: 388 TTNE 391


>gi|254410024|ref|ZP_05023804.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
          chthonoplastes PCC 7420]
 gi|196183060|gb|EDX78044.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
          chthonoplastes PCC 7420]
          Length = 388

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           ++I  L +  F++     L   A+    VG NG GK+ +L+   FLS
Sbjct: 2  DMRISHLRVDNFKSLVDFDLPL-AKFNCLVGLNGSGKSTVLQFFYFLS 48


>gi|189200513|ref|XP_001936593.1| structural maintenance of chromosomes protein 6 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187983692|gb|EDU49180.1| structural maintenance of chromosomes protein 6 [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1139

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 71/215 (33%), Gaps = 31/215 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +  L +         +G NG GK+ +L A++    G+     R  +   
Sbjct: 93  IEEIQCINFMCHEHLTVTLGPLINFIIGHNGSGKSAVLTALTICLGGKATATNRAQNLKS 152

Query: 64  VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVR-----CLQINDVVIRV 112
           + + G     S   +++    LA        SI +E   ++S           N +V   
Sbjct: 153 LIKEG-KEHASVTVKIKNQGPLAYKPAIYGTSIIVERHFNKSGTSGFKLKDSNNKLVTTK 211

Query: 113 VDELNKHL---------RISWLVPSMDR--IFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
             EL   L          ++ L   M R  +      ++ +F       ++        D
Sbjct: 212 KAELEDILDAFSMQIDNPMNVLTQDMARQFLNHSTPKDKYKFF-LQGTQLE----NLNRD 266

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           ++++ +    + T      +    +  +M E   +
Sbjct: 267 YQQIEQSLEAMNTRVEVKEADLQVLRQEMQEAASR 301


>gi|152983368|ref|YP_001354853.1| hypothetical protein mma_3163 [Janthinobacterium sp. Marseille]
 gi|151283445|gb|ABR91855.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 634

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 5  IKIKFLNISEFRNYASLR-LVFD-AQHTIFVGDNGVGKTNILEAIS 48
          +K++   ++ FR+      + F     TI VG N  GKT+ILEA+S
Sbjct: 1  MKLRSFRVTNFRSIIDTGWVNFSTDGITILVGQNESGKTSILEALS 46


>gi|119511431|ref|ZP_01630542.1| hypothetical protein N9414_16459 [Nodularia spumigena CCY9414]
 gi|119463896|gb|EAW44822.1| hypothetical protein N9414_16459 [Nodularia spumigena CCY9414]
          Length = 391

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 5  IK-IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          ++ ++ L I +FR   +L L    Q  I VG N  GKT++LEAIS
Sbjct: 1  MRNLESLTIHQFRGLQNLELKDTGQINILVGVNNAGKTSVLEAIS 45


>gi|116049086|ref|YP_792112.1| hypothetical protein PA14_49480 [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|115584307|gb|ABJ10322.1| hypothetical protein PA14_49480 [Pseudomonas aeruginosa
          UCBPP-PA14]
          Length = 595

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++I  L +  F+ Y    +      ++F G N  GKT IL+A +     +
Sbjct: 1  MQITKLTLHRFKKYRDKEISIKPGLSLFAGPNNAGKTTILQAFAVWEFCK 50


>gi|88602370|ref|YP_502548.1| hypothetical protein Mhun_1080 [Methanospirillum hungatei JF-1]
 gi|88187832|gb|ABD40829.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
          Length = 369

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+K + I  F++   + L  +   T+ +G NG GK+N+L A  FL
Sbjct: 1  MKLKNICIKGFKSLEYVDLPLN-HLTVCIGANGSGKSNLLSAFYFL 45


>gi|68075435|ref|XP_679636.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56500430|emb|CAI04824.1| hypothetical protein PB000032.03.0 [Plasmodium berghei]
          Length = 250

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYA 62
           I+ L +  F++Y+ +++   F  + +  VG NG GK+NI++A+ F+     +  R+   +
Sbjct: 67  IEKLILENFKSYSGIKIIGPFYKKFSCIVGPNGSGKSNIIDAMLFVFGRRAKKIRQNKLS 126

Query: 63  DVTR 66
           D+  
Sbjct: 127 DLIH 130


>gi|320588482|gb|EFX00951.1| DNA repair protein [Grosmannia clavigera kw1407]
          Length = 1225

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +  L           VG+NG GK+ IL AI+     +     R  S  +
Sbjct: 183 IERVTCVNFMCHTRLECELGPLLNFIVGENGSGKSAILTAITLCLGAKASATNRGGSLKN 242

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISI 90
             + G              E   +  +
Sbjct: 243 FIKEGEERGILAVRIKNCGEDAYEHDV 269


>gi|296445508|ref|ZP_06887464.1| SMC domain protein [Methylosinus trichosporium OB3b]
 gi|296256913|gb|EFH03984.1| SMC domain protein [Methylosinus trichosporium OB3b]
          Length = 857

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 104/308 (33%), Gaps = 47/308 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K + L +  F+++  S   + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFQRLRLLGFKSFCESTDFLIEPGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRGSG 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   G  S      A V  +   +D           ++++  R +R S    ++N  
Sbjct: 61  MDDVIFSGGGSRAARNVAEVGLVLDNSDRAAPAAFNDAETLEVTRRIERESGSTYRVNGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR---MVFAIDPRH-- 155
            +R  D   L          P++ R      I S     RRR L+    +      RH  
Sbjct: 121 EVRAKDVQLLFADASTGARSPALVRQGQIGEIISAKPQARRRILEEAAGVAGLHSRRHEA 180

Query: 156 -------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ-MAELGVKINIARVEMINA 207
                     +   E +++       +G  DS    + +AQ    +  +I         A
Sbjct: 181 ELRLTAASENLTRLEDVLKQ-----VDGQTDSLRRQARQAQRYRAVAAQIRQN-----EA 230

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L + I      E     +  L        +++    +   A+ +          +    G
Sbjct: 231 LIAFIAHRQASEQLGAAERRLEEDTKLVAERTLQQAETARAQAIAAHELPKLRDKEAEAG 290

Query: 268 PHRSDLIV 275
                LIV
Sbjct: 291 AALHRLIV 298


>gi|268608883|ref|ZP_06142610.1| structural maintenance of chromosome protein (chromosome
           segregation ATPase), putative [Ruminococcus flavefaciens
           FD-1]
          Length = 1190

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++   + L FD   T  VG NG GK+NI +++   L     +  R   
Sbjct: 1   MYLKSLEIQGFKSFPDKISLTFDKGLTAVVGPNGSGKSNIGDSVRWVLGEQSTKTLRGNK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLA---DISIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ +     F +    ++  +      D  + +  +  RS      IN    R
Sbjct: 61  MEDVIFSGTVARKPMGFAAVTLNIDNSDKTIPDMDDEVAVTRKLYRSGESEYMINGRSCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|163841670|ref|YP_001626075.1| ABC transporter ATP-binding protein [Renibacterium salmoninarum
          ATCC 33209]
 gi|162955146|gb|ABY24661.1| ABC transporter ATP-binding protein [Renibacterium salmoninarum
          ATCC 33209]
          Length = 98

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I  L +  FR+   L L       +  G NG GK+N+  A+  L+       A+   + R
Sbjct: 2  ITALAVHNFRSIRELVLDLH-GLDVITGANGSGKSNLYRALRLLAECGS--GAAIGSLAR 58

Query: 67 IG 68
           G
Sbjct: 59 QG 60


>gi|67540388|ref|XP_663968.1| hypothetical protein AN6364.2 [Aspergillus nidulans FGSC A4]
 gi|40739558|gb|EAA58748.1| hypothetical protein AN6364.2 [Aspergillus nidulans FGSC A4]
 gi|259479417|tpe|CBF69619.1| TPA: Chromosome segregation protein sudA (DA-box protein sudA)
           [Source:UniProtKB/Swiss-Prot;Acc:Q00737] [Aspergillus
           nidulans FGSC A4]
          Length = 1215

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 27/260 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + +K + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGME---------GLADISIKLETRDDRSVRCLQINDVVIRV 112
                          A VE +          G  ++ ++      +    L   +     
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSDERFPTGKPELVLRRTIGLKKDEYTLDRKNATKND 120

Query: 113 VDELNKHLRISWLVPSMD-------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
           V  L +    S   P           + +    ER   L  +       +  R  +  ++
Sbjct: 121 VMNLLESAGFSRSNPYYIVPQGRVTALTNMKDSERLNLLKEVAGT--QVYEARRAESLKI 178

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           M   N        D      I  ++AEL  + +  R           +EY     +   +
Sbjct: 179 MHETNS--KREKIDE-LLDFINERLAELEEEKDELRNFQEKDKERRCLEYTI---YSREQ 232

Query: 226 LSLTGFLDGKFDQSFCALKE 245
             +  FLD   +Q    +++
Sbjct: 233 QEIASFLDSLEEQRQTGVED 252



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 279  DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            D    I   S G++ +  + +  A           AP  L DEI A+LD   R A+ +++
Sbjct: 1105 DDQQRIQQLSGGQKSLCALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQML 1159

Query: 339  T----DIGSQIFMTG 349
                     Q   T 
Sbjct: 1160 KTISDSTNGQFICTT 1174


>gi|302188071|ref|ZP_07264744.1| hypothetical protein Psyrps6_17078 [Pseudomonas syringae pv.
          syringae 642]
          Length = 784

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++IK L I+ FR   S+R+   A+ T+ VG N  GK++ + A+     G+
Sbjct: 1  MQIKHLEIANFRKLHSVRIDLSAETTLLVGANNSGKSSAMLALRKFLGGK 50


>gi|195108425|ref|XP_001998793.1| GI24164 [Drosophila mojavensis]
 gi|193915387|gb|EDW14254.1| GI24164 [Drosophila mojavensis]
          Length = 1240

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 9/120 (7%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++F+ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LQFIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   +  ++G   +  +       S    +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVARSCYVTAKFILDGEKHMDFQRAVISGSSE--YRINGESVSSNTYLNKL 144


>gi|170016842|ref|YP_001727761.1| DNA repair protein RecN [Leuconostoc citreum KM20]
 gi|169803699|gb|ACA82317.1| DNA repair protein RecN [Leuconostoc citreum KM20]
          Length = 565

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 101/305 (33%), Gaps = 53/305 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + ++ L I  F     + L F+   T+  G+ G GK+ I+ A+  L+ GR     +
Sbjct: 1   MKANM-LENLVIENFAIIEKIDLQFEDGMTVLTGETGAGKSIIIGALLLLTGGR-----A 54

Query: 61  YADVTRIGSPSFFSTFAR----------------VEGMEGLADISIKLETRDDRSVRCLQ 104
            +++ R GS                         +E  +G   I  +L          ++
Sbjct: 55  SSEMVRHGSKKAILQAVFSITTNQSLLTLLSQHGIEADDGQMIIYRELNHNGRS---VIR 111

Query: 105 INDVVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMI 160
           IN V+I  + +  + + L          ++ +     +    F   M+  +   ++   +
Sbjct: 112 INGVLINLKTLSIIGRQLVDIQGQNDTQQLLNVDEHIQLLDAFGGDMLLQVKSAYQSEFL 171

Query: 161 DFERLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVK---------INIARVEMIN--AL 208
           +F R +  R R +     + +     ++ Q  EL            +  AR +++N   +
Sbjct: 172 EF-RAITQRIRKIQTSQQEMTQRLDLLQFQQQELMEADLSLNEENDLLDARGKLLNYKKI 230

Query: 209 SSLIMEYVQKENFPHI-----------KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           +  +       N               +L      D  + +    + + Y      GR +
Sbjct: 231 ADRLQNTQFALNGEQTGAIDLLAEAMHELQEIAAYDNTYAELAKTIADSYYTAQEVGRDV 290

Query: 258 DSMSR 262
           D    
Sbjct: 291 DEQIG 295


>gi|91793868|ref|YP_563519.1| chromosome segregation protein SMC [Shewanella denitrificans OS217]
 gi|91715870|gb|ABE55796.1| Chromosome segregation protein SMC [Shewanella denitrificans OS217]
          Length = 1138

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 94/262 (35%), Gaps = 24/262 (9%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++  +  + F+ Q +  +G NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDVTKIPFEQQLSAIIGPNGCGKSNIIDAVRWVLGESSAKNLRGDS 60

Query: 61  YADVTRIGSP------------SFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS              F ++  R+ G      +IS+K +   D       +N 
Sbjct: 61  MTDVIFNGSSVRRPVSVAGVELVFDNSLGRLAGQYASYQEISVKRQVSRD-GDSFYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
              R  D +      + L P    I    ++ R   L                   R   
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISR---LIESRPQDLRVFIEEAAGISRYKE 175

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            R                +     ELG +++    +  +AL+    E+ Q+E     +L 
Sbjct: 176 RRKETENRIRHTRDNLERLNDIRLELGSQLDKLAEQAKSALA--YREFKQQERQLQAQLL 233

Query: 228 LTGFLDGKFDQSFCALKEEYAK 249
           +  + +   +      + +  +
Sbjct: 234 VVRYQELALNTEKIDKEIQLLE 255



 Score = 36.8 bits (84), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  +I   S GE+ +  + +  A  RL       AP  +LDE+ A LD+       R+
Sbjct: 1030 GKKNSSIHLLSGGEKALTALSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVERFCRL 1084

Query: 338  VTDIGSQI 345
            + ++   +
Sbjct: 1085 LQEMSQSV 1092


>gi|330905964|ref|XP_003295299.1| hypothetical protein PTT_00367 [Pyrenophora teres f. teres 0-1]
 gi|311333517|gb|EFQ96610.1| hypothetical protein PTT_00367 [Pyrenophora teres f. teres 0-1]
          Length = 1137

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 101/321 (31%), Gaps = 40/321 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +  L +         +G NG GK+ +L A++    G+     R  +   
Sbjct: 92  IEEIQCINFMCHEHLTVTLGPLINFIIGHNGSGKSAVLTALTICLGGKATATNRAQNLKS 151

Query: 64  VTRIGSPSFFSTFARVEG---------MEGLADISIKLETRDDRSVRCLQ--INDVVIRV 112
           + + G     S   +++            G + I  +  ++   S   L+   N +V   
Sbjct: 152 LIKEG-KEHASVTVKIKNQGPLAYKPAQYGASIIVERHFSKSGTSGFKLKDCNNKLVTHK 210

Query: 113 VDELNKHL---------RISWLVPSMDR--IFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
             EL   L          ++ L   M R  +      ++ +F       ++        D
Sbjct: 211 KSELEDILDAFSMQIDNPMNVLTQDMARQFLNHSTPKDKYKFF-LQGTQLE----NLNRD 265

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           ++++ +    + T      +    +  +M EL   +   R + ++   ++  +   +  +
Sbjct: 266 YQQIEQSLEAMNTRVEVKEADLKPLRQKMQEL--LLRAQRAKDLDKRRAMEKQRANQAAW 323

Query: 222 ----PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-DSMSRRTLIGPHR--SDLI 274
                  +L            +    ++E   +  +  ++ D           R  +DL 
Sbjct: 324 ARVEEQERLVADAESAIAEADNLITKRQEIVTRAANEYELADQAHGAAEEVVTRITADLE 383

Query: 275 VDYCDKAITIAHGSTGEQKVV 295
                + +       G  K+ 
Sbjct: 384 PAREQRDVAKETFQQGRAKLA 404


>gi|293365581|ref|ZP_06612290.1| DNA repair protein RecN [Streptococcus oralis ATCC 35037]
 gi|307703535|ref|ZP_07640477.1| DNA repair protein RecN [Streptococcus oralis ATCC 35037]
 gi|291315949|gb|EFE56393.1| DNA repair protein RecN [Streptococcus oralis ATCC 35037]
 gi|307622942|gb|EFO01937.1| DNA repair protein RecN [Streptococcus oralis ATCC 35037]
          Length = 555

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 25/212 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNLMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P                      +G+E   +I I+ E  ++ RSV  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQELFDEQGLEMGDEIIIRREILQNGRSVSRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL    +    D+               F D     +   ++     + ++ + 
Sbjct: 117 LRAIGQHL--VDIHGQHDQEELMRPQLHIQMLDEFGDAAFLDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
              +        +    +E QMAE+      A
Sbjct: 175 VLEVKKNQQEHKARIEMLEFQMAEIEAANLQA 206


>gi|240274260|gb|EER37777.1| nuclear condensin complex subunit Smc4 [Ajellomyces capsulatus
           H143]
          Length = 1328

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 16/120 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F    +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 240 PRMVITHLVMTNFKSYAGRQVVGPFHVSFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 296

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
                   +    +      F  VE               I  E++   S R  + N   
Sbjct: 297 MRQGKISALIHNSANFPDLQFCEVEVHFQEILDLPDGGHEIVPESQLIVSRRAFKNNSSK 356


>gi|195392610|ref|XP_002054950.1| GJ19101 [Drosophila virilis]
 gi|194149460|gb|EDW65151.1| GJ19101 [Drosophila virilis]
          Length = 1130

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +   +D  + ++  +      + +  V+    D+   + +
Sbjct: 61  RQALLHEGTGARVISAYVEIIFDNSDNRVPIDKEE------IYLRRVIGAKKDQYFLNKK 114

Query: 122 IS 123
           + 
Sbjct: 115 VV 116



 Score = 38.0 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + +  +           AP  L DEI   LD   R A+  ++ ++     F
Sbjct: 1029 SGGQKSLVALALIFS-----IQKCDPAPFYLFDEIDQALDAMHRKAVADMIHELSDTAQF 1083

Query: 347  MTGTDKSVFDSLNETAKFMRI 367
            +T T     + L    KF  +
Sbjct: 1084 ITTT--FRPELLENAHKFYGV 1102


>gi|12034665|gb|AAG45955.1|AF282921_1 putative RecF protein [Shigella flexneri]
          Length = 284

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
            RI I+++ I  FR+   + L       I  G NG GK+NI  AI  L+
Sbjct: 16 AGRIMIQYIRIQNFRSVKDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 64


>gi|81300854|ref|YP_401062.1| condensin subunit Smc [Synechococcus elongatus PCC 7942]
 gi|81169735|gb|ABB58075.1| condensin subunit Smc [Synechococcus elongatus PCC 7942]
          Length = 1195

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 93/259 (35%), Gaps = 49/259 (18%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + +S F+++  +  L    + T+  G NG GK+NIL+A+ F   LS  +G R   
Sbjct: 2   VYIKQIELSHFKSFGGTTSLPLLPEFTVVTGPNGSGKSNILDALLFALGLSSSKGMRADR 61

Query: 61  YADVT--------RIGSPSFFSTFARVEGME----------------GLADISIKLETRD 96
             D+         R    +  +    ++  +                G+A+ ++  + R 
Sbjct: 62  LPDLVNSTYASRSRSTVETLVTVTFALDDWQPEAEETEEGEGTGLQPGMAEWTVSRKLRV 121

Query: 97  DRSVR---CLQINDVVI--RVVDELNKHLRI------SWLVPSMDRIFSGLSMERRRFLD 145
             S        +N      + + E    LRI        L   +  I S    +RR+ +D
Sbjct: 122 TPSGTYTSTYAMNGEACTLQQLHEQLSRLRIYPEGYNVVLQGDVTNIISMSPRDRRQIID 181

Query: 146 RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
            +           +  F+R +      L         C  +E ++ E   ++   R +  
Sbjct: 182 ELAG---------VAQFDRKIEQAKGKLEAVKEREDRCRIVEQELIEQRDRLAKDREKA- 231

Query: 206 NALSSLIMEYVQKENFPHI 224
               +L  E   K+++  +
Sbjct: 232 QKYQALRQEQATKQSWEAV 250


>gi|302807823|ref|XP_002985605.1| hypothetical protein SELMODRAFT_157483 [Selaginella moellendorffii]
 gi|300146514|gb|EFJ13183.1| hypothetical protein SELMODRAFT_157483 [Selaginella moellendorffii]
          Length = 1045

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 73/227 (32%), Gaps = 28/227 (12%)

Query: 5   IK--IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           ++  I  + +  F  Y+ +      +  + +G NG GK++++ A++    G      R  
Sbjct: 1   MRGNITQIRVHNFMTYSDITSKPGPRLNLVIGPNGTGKSSLVCALAIGLGGEPQLLGRAG 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-INDVVIRVVDEL-- 116
              D  + G    +     +       D S  ++   ++  +    +N         L  
Sbjct: 61  HIGDYVKRGEDCGW---VEITLRGDSPDASTIIKRSFNKQNKSEWQLNGESSTKKAVLES 117

Query: 117 -----NKHLRISWLVPSMDRI-------FSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                 +   ++  +P               L+   +   D  +         +++   +
Sbjct: 118 VQQFNIQVNNLTQFLPQDRVCEFAKMTPIELLAETEKAVGDPELSHQH----EKLVTLNQ 173

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
            ++ R   + +         S  A++ E  V+    R  ++  + S+
Sbjct: 174 QLKQRQLSVRQLENALRQHRSNNAEL-EKDVERVQERNRLLEKVKSM 219


>gi|254283161|ref|ZP_04958129.1| chromosome segregation protein SMC [gamma proteobacterium NOR51-B]
 gi|219679364|gb|EED35713.1| chromosome segregation protein SMC [gamma proteobacterium NOR51-B]
          Length = 1166

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 90/281 (32%), Gaps = 38/281 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +  +  VG NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKTIQLAGFKSFVDPTTVSFPSNMSAVVGPNGCGKSNVIDAVRWVMGESSAKTLRGES 60

Query: 61  YADVTRIGS-------PSFFSTFARVEGMEGLADISIKLETRDDRSVRC-----LQINDV 108
            +DV   G+        +                     E    R V         +N  
Sbjct: 61  MSDVIFNGTTNRQPVGQASIELVFDNSDGGIGGAYGAYAEISVRRQVIREGGSDYFLNGS 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             R  D         L            + R+      E R F++        +++ R  
Sbjct: 121 KCRRRDITDLFLGTGLGPRSYAIIEQGMISRLIESKPEELRVFIEEAAG--ISKYKERRR 178

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           + E  MR   R L      +     +E Q+A L       R       +    EY  ++ 
Sbjct: 179 ETENRMR---RTLENLERLTDLRDELERQLAHL------KRQA---QAAERYREYKAEDR 226

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
               +L    + + K   +         + L +  + +   
Sbjct: 227 ELKSQLLALQWREQKAASTSTETAVAELEVLQERHRAELAK 267


>gi|193213727|ref|YP_001994926.1| chromosome segregation protein SMC [Chloroherpeton thalassium ATCC
           35110]
 gi|193087204|gb|ACF12479.1| chromosome segregation protein SMC [Chloroherpeton thalassium ATCC
           35110]
          Length = 1187

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/297 (18%), Positives = 108/297 (36%), Gaps = 41/297 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           + +  L +  F+++A  +++ FD+  T  VG NG GKTNI++AI   L   +    R   
Sbjct: 1   MYLSKLELFGFKSFAQRVQVKFDSGLTAIVGPNGCGKTNIVDAIRWVLGEQKTSVLRSDK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             +V   G+ +            +E  + +       + L  R  RS      +N V  R
Sbjct: 61  MENVIFNGTKNRRPLGMSEISLTIENTKNILPTEYSEVTLTRRLYRSGESEYFLNKVPCR 120

Query: 112 VVDELNKHLRISWLVPSMD--------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D  +  +       +          +I S  + ERRR  +     I    +RR   ++
Sbjct: 121 LRDIWDLFVDTGMGSDAYSVIELKMIEQILSDNAEERRRLFE-EAAGITKYKQRRKQTYK 179

Query: 164 RL----------------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           +L                +  +   L      ++   +++ ++  L + +   +   ++A
Sbjct: 180 KLETTSQDLARVEDIVNEVEKKVNALERQAKKAAQVRTLKDELLSLELGLAERQAAALDA 239

Query: 208 -LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
            L  L  E    E       +L   L+   +     L E   ++L    + +  +RR
Sbjct: 240 KLKPLQAELPIHETKKSELTALIAKLEADIESQQLKLVE--IERLRSTSQKEINARR 294


>gi|24649535|ref|NP_651211.2| SMC1 [Drosophila melanogaster]
 gi|7301097|gb|AAF56231.1| SMC1 [Drosophila melanogaster]
 gi|21428690|gb|AAM50005.1| SD02122p [Drosophila melanogaster]
          Length = 1238

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|23016160|ref|ZP_00055919.1| COG1196: Chromosome segregation ATPases [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1154

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/227 (21%), Positives = 85/227 (37%), Gaps = 31/227 (13%)

Query: 6   KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           +   L +S F+++     LV +   T  VG NG GK+N++EA+ ++   +  R  R    
Sbjct: 3   QFTKLRLSGFKSFVDPAELVIEPGMTGVVGPNGCGKSNLIEALRWVMGETSARQMRGGEM 62

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADI-----------SIKLETRDDRS-VRCLQINDVV 109
            DV   G  S        E M GL +             I++  R +R      +IN + 
Sbjct: 63  DDVI-FGGTSGRPARNVAEVMLGLDNTARTAPPQFDRDEIEVMRRIERGNGSNYRINGLD 121

Query: 110 IRVVD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
            R  D      +     R S LV    +  + +    +RR  L+     I   +      
Sbjct: 122 TRARDVQLLFADAATGARSSGLVSQGRVGALINAKPADRRSLLE-EAAGISGLYS---RR 177

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-RVEMINA 207
            E  +R +N  L     D    ++++ Q+  L  +   A R   ++ 
Sbjct: 178 HEAELRLKNAELNLSRLDDV-LATLDEQLKSLQKQARQANRYRTLSE 223


>gi|225019243|ref|ZP_03708435.1| hypothetical protein CLOSTMETH_03196 [Clostridium methylpentosum
          DSM 5476]
 gi|224947874|gb|EEG29083.1| hypothetical protein CLOSTMETH_03196 [Clostridium methylpentosum
          DSM 5476]
          Length = 1191

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K L +  F+++    L  F    T  VG NG GK+NI +A+ ++      +  R + 
Sbjct: 1  MLLKSLELQGFKSFPDKTLLEFHDGVTAVVGPNGSGKSNISDAVRWVLGEQSSKTLRGSK 60

Query: 61 YADVTRIGSPS 71
            DV  +G+ S
Sbjct: 61 MEDVIFVGTQS 71


>gi|205374089|ref|ZP_03226889.1| DNA repair and genetic recombination [Bacillus coahuilensis m4-4]
          Length = 397

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 85/273 (31%), Gaps = 35/273 (12%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           + L+I  F    SL L  +   T+  G+ G GK+ I++AI  L  GRG      A+  R 
Sbjct: 2   QELSIRNFAIIESLNLSIEEGLTVLSGETGAGKSIIIDAIHLLVGGRG-----SAEFVRH 56

Query: 68  GSPSFFSTF--------------ARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIR 111
           G                      A V G+E   D+ I             +IN     I 
Sbjct: 57  GEKKAEIEGLFYLDRQDHPCYQKAEVVGVEIEDDMLILRREISASGKSVCRINGKLVTIS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            + E+   L           +       +   +F    + +    ++     +++     
Sbjct: 117 TLREIGSTLVDIHGQHEHQELMDERFHLLLLDQFGGNEIISALSNYQEIYTVYDQTKNHL 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEM--INALSSLIMEYVQK 218
           ++L       +     I+ Q++E+           ++   + ++     L   +    + 
Sbjct: 177 DKLNDNEQKTAHRLDLIQFQLSEIEKAELRLHEDEELMEEKRKLNNFEKLYEALNSAYES 236

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
                  L  TG       +S   + EE    L
Sbjct: 237 IQGEQKALDWTGLAMSHM-ESVSDIDEELNTVL 268


>gi|119510616|ref|ZP_01629746.1| ATPase [Nodularia spumigena CCY9414]
 gi|119464777|gb|EAW45684.1| ATPase [Nodularia spumigena CCY9414]
          Length = 353

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 71/381 (18%), Positives = 144/381 (37%), Gaps = 46/381 (12%)

Query: 5   IKIKFLNISEF---RN-----YASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG 55
           +KI+ L +  F   R+     +            + +G NG GKT++L+AI S L    G
Sbjct: 1   MKIQSLQLKYFKKFRSSPVFDFTDQETGLARDIIVLIGMNGAGKTSLLQAIASTLGTATG 60

Query: 56  FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            R  + +D+   G  ++    +   G E    ++++  + + ++VR         + + +
Sbjct: 61  -RLKAPSDLEWAGF-NYELLGSNWRGFEPEVTVNVQFSSGELQAVRDF------QQKLQD 112

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAID-PRHRRRMIDFE-RLMRGRNR 171
           + + L+     P    I +      R   D    +F      + ++++  E   +  R  
Sbjct: 113 MGRDLQ----PPGDKHIVTLKWRNGRVQADSAAELFQFKGREYAKQLLRAEGFSVFERVG 168

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            +   Y +    +S+  +  +  V+I     +++    S   ++ Q      I++   G 
Sbjct: 169 TIL-WYTEQRTSTSLTTEDPDRKVEITE---DLLRDRLSKWRQFHQDVETEKIRILRPGQ 224

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI--TIAHGST 289
            D        A  E   K +F  R  +    R  +    S+L     D      I+  S 
Sbjct: 225 KD------LYAEIERAYKAVFPERSFEGPVPRENVDDILSELWFYLYDGRNQYEISEMSG 278

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFM 347
           GE+ +  + +  A   +         ++L+DEI  HL    + AL R +  +G+  Q  +
Sbjct: 279 GERAIFPMLMDFASWNI------HNSVILIDEIELHLHPPMQQALLRALPKLGTNNQFII 332

Query: 348 TGTDKSVFDSLNETAKFMRIS 368
           T T     + L   A  +R+ 
Sbjct: 333 T-THSDYIEQLVPEAYIIRLE 352


>gi|323476649|gb|ADX81887.1| ATPase-like protein [Sulfolobus islandicus HVE10/4]
          Length = 345

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 24/47 (51%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  L I  FR     +L   +Q  I VG N  GK+ ILEAI F+S  
Sbjct: 2  INGLEIQNFRGIKYCKLEDLSQVNILVGRNNSGKSTILEAIYFISSL 48


>gi|312218286|emb|CBX98232.1| similar to dna repair protein rad18 [Leptosphaeria maculans]
          Length = 1140

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +  L +         +G NG GK+ +L A++    G+     R  +   
Sbjct: 94  IEEIQCINFMCHEHLTVPLGPNINFIIGHNGSGKSAVLTALTICLGGKATATNRAQNLKS 153

Query: 64  VTRIGSPSFFSTF 76
           + + G      T 
Sbjct: 154 LIKEGKDHSVVTV 166


>gi|254567706|ref|XP_002490963.1| Subunit of the multiprotein cohesin complex, essential protein
          involved in chromosome segregation an [Pichia pastoris
          GS115]
 gi|238030760|emb|CAY68683.1| Subunit of the multiprotein cohesin complex, essential protein
          involved in chromosome segregation an [Pichia pastoris
          GS115]
 gi|328352504|emb|CCA38903.1| Structural maintenance of chromosomes protein 4 [Pichia pastoris
          CBS 7435]
          Length = 1225

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYASLR-LVF-DAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASY 61
          ++  LN+  F++Y  L  + F  A  T  +G NG GK+N+++AISF+   +    R  + 
Sbjct: 3  RLIGLNLYNFKSYRGLNRIGFGSANFTSIMGTNGSGKSNLMDAISFVLGLQSNSLRSTNA 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 KDLIYRG 69


>gi|167624498|ref|YP_001674792.1| chromosome segregation protein SMC [Shewanella halifaxensis
           HAW-EB4]
 gi|167354520|gb|ABZ77133.1| chromosome segregation protein SMC [Shewanella halifaxensis
           HAW-EB4]
          Length = 1143

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 106/289 (36%), Gaps = 49/289 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++   +  +  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPLLSPLSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
            ADV   GS +            F +   R+ G      +I++K +   D        N 
Sbjct: 61  MADVIFNGSTARRPVSVASVELLFDNQDGRLAGQYSSYQEIAVKRQVSRDGDSSYFLNNQ 120

Query: 108 VVIRVVDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
              R   ++      + L P            R+      + R F++        R++ R
Sbjct: 121 KCRRK--DITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRVFIEEAAG--ISRYKER 176

Query: 159 MIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
             +   R+   R  L   G   S     ++ ++AE        R            E  Q
Sbjct: 177 RRETENRIRHTRENLARLGDIRSELAKQLD-KLAEQAETAKKYR------------ELKQ 223

Query: 218 KENFPHIKLSLTGFLD-----GKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            E     +LS++ + +      K D+    L  + A+ L + + ++   
Sbjct: 224 AERKCDAELSVSRYHELLQQIAKIDEQLGKLALQQAQFLAEKQTIELRL 272



 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 40/206 (19%), Positives = 75/206 (36%), Gaps = 39/206 (18%)

Query: 171  RLLTEGYFDSSW-CSSIEAQMAELGVKINIARVE----MINALSSLIMEYVQKENFPHIK 225
            RLL E   D     S+++ +   L  +  + R+     ++ A++   +E   ++N   + 
Sbjct: 900  RLLNEQRVDVELILSTLDDKKTMLWRQKELERLREQIGLLGAINLAAIEEYDQQNQRKLY 959

Query: 226  LSLTGFLDGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRTL---------IGPHRSDLI 274
            L      D   + +  +L+E   K   +   R  D+  +             G   + L 
Sbjct: 960  LD---SQDDDLNAALSSLEEAIRKIDKETKSRFKDTFDKVNTDLGILFPKVFGGGSAYLA 1016

Query: 275  VDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
            +   D               K  TI   S GE+ +  + +  A  RL       AP  +L
Sbjct: 1017 LTDDDLLETGVSIMARPPGKKNSTIHLLSGGEKALTALSLVFAIFRL-----NPAPFCML 1071

Query: 320  DEISAHLDEDKRNALFRIVTDIGSQI 345
            DE+ A LD+       R+V ++   +
Sbjct: 1072 DEVDAPLDDANVERFCRLVKEMSQSV 1097


>gi|154270600|ref|XP_001536154.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150409728|gb|EDN05168.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1447

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 16/120 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F    +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 240 PRMVITHLVMTNFKSYAGRQVVGPFHVSFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 296

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
                   +    +      F  VE               I  E++   S R  + N   
Sbjct: 297 MRQGKISALIHNSANFPDLQFCEVEVHFQEILDLPDGGHEIVPESQLIVSRRAFKNNSSK 356


>gi|149245636|ref|XP_001527295.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146449689|gb|EDK43945.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1211

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 4/107 (3%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F+ Y +  +           VG NG GK+N   AI   LS          
Sbjct: 1   MHIKKIKIQGFKTYKNETIVNQLSPHCNAVVGRNGSGKSNFFAAIRFVLSDAYTHMTREE 60

Query: 62  AD-VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
              +   GS +  S +  V          I  +    R    L+ +D
Sbjct: 61  RQSLIHDGSGTIMSAYVEVVFDNTDKRFPIGKDEISIRRTIGLKKDD 107



 Score = 40.3 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 90/275 (32%), Gaps = 26/275 (9%)

Query: 90   IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP-----SMDRIFSGLSMERRRFL 144
               ET    S R +    +  +   E+N  ++   ++P         + +     + + +
Sbjct: 906  TSFETYQKESSRIVNQKLIKEQTKAEINNSIKNLGIIPQFGSDDFAGLTTDEMAHQLKKV 965

Query: 145  DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204
            +  +      +R+ +  + +  +     L     D       +  + +L   +   + + 
Sbjct: 966  NEDLVKYSHINRKALEQYNQFTKQ-QEDLRSRRED---LDVSKQSIEDLIKNLQKQKKDA 1021

Query: 205  INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL--------FDGRK 256
            I      + E      F  +     G+L  +   S  +  +   ++              
Sbjct: 1022 IMNSFKQVAEAFHNV-FEQLVPQGIGYLTLQRKPSLSSESQLQNQEHQTQDVDFDEASDY 1080

Query: 257  MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
             DS+   T +    S       D+   I   S G++ +  + +  A           AP 
Sbjct: 1081 QDSIDNYTGVAISVS--FNSKDDEQQKIEQLSGGQKSLCAIALIFA-----IQHCDPAPF 1133

Query: 317  LLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGT 350
             L DEI ++LD   R ++  ++  + SQ  F+  T
Sbjct: 1134 YLFDEIDSNLDTQYRTSVAALIKSLSSQAQFICTT 1168


>gi|313896559|ref|ZP_07830108.1| DNA repair protein RecN [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312974744|gb|EFR40210.1| DNA repair protein RecN [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 574

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 83/265 (31%), Gaps = 28/265 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++  F     + + F A   I  G+ G GK+ +++A   L    G R ++ A   R
Sbjct: 2   LKSLHVRNFALLEDVSVEFGAGLNILTGETGAGKSILIDA---LGAILGQRVSTDA--IR 56

Query: 67  IGSPSF-----FSTFARVEGM--------EGLADISIKLETRDDRSVR-CLQIND--VVI 110
            G  +      FS  A    +            +  + +  +  R+ +  + +N   V +
Sbjct: 57  SGCDALRVEAVFSLHADARELAAVLAEQEIDCEEEELIIVRKVSRAGKSSVLVNGSHVTV 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMER-RRFLDRMVFAIDPRH---RRRMIDFERLM 166
             +  L               +    S  R     D  +  +   +        +   L 
Sbjct: 117 AFLRSLAPFFVDIHGQNENLALLREDSQRRLLEDGDGTLAQLLSAYRGVYDAWREKRALR 176

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQM--AELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
             R     E           E ++  AEL    +      I  LS  + + V   +    
Sbjct: 177 EERTEAAHEIGERLDMLRWQEQEISDAELQEGEDEELETEIRRLS-HMEKLVDYASEASA 235

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAK 249
           +LS  G        +   ++ + A+
Sbjct: 236 RLSEDGSAGAAVLTALAVVRRDLAE 260


>gi|195134412|ref|XP_002011631.1| GI10989 [Drosophila mojavensis]
 gi|193906754|gb|EDW05621.1| GI10989 [Drosophila mojavensis]
          Length = 1200

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +   +D  + ++  +      + +  V+    D+   + +
Sbjct: 61  RQALLHEGTGARVISAYVEIIFDNSDNRVPIDKEE------IYLRRVIGAKKDQYFLNKK 114

Query: 122 IS 123
           + 
Sbjct: 115 VV 116



 Score = 38.0 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + +  +           AP  L DEI   LD   R A+  ++ ++     F
Sbjct: 1099 SGGQKSLVALALIFS-----IQKCDPAPFYLFDEIDQALDAMHRKAVADMIHELSDTAQF 1153

Query: 347  MTGTDKSVFDSLNETAKFMRI 367
            +T T     + L    KF  +
Sbjct: 1154 ITTT--FRPELLENAHKFYGV 1172


>gi|163748618|ref|ZP_02155871.1| hypothetical protein KT99_18482 [Shewanella benthica KT99]
 gi|161331728|gb|EDQ02532.1| hypothetical protein KT99_18482 [Shewanella benthica KT99]
          Length = 534

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 2   TNRIKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISF 49
           T ++++  + +  FR ++ + +   D + T+ +G+NG GK+ IL+AIS 
Sbjct: 59  TQKLELTHIKLQNFRAFSEIDIKIPDNRLTVIIGNNGGGKSTILDAISH 107


>gi|153870348|ref|ZP_01999768.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152073185|gb|EDN70231.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 145

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNIL 44
          +KI  L++  F+       L FD    + +G NG GK+N++
Sbjct: 1  MKILRLSLRGFKTIKHQENLEFDENLNLLIGANGSGKSNLI 41


>gi|328793009|ref|XP_001122902.2| PREDICTED: structural maintenance of chromosomes protein 6-like
           [Apis mellifera]
          Length = 1248

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62
           KIK + I  F  + +L ++ +      +G NG GK+ IL A++     R     R AS  
Sbjct: 41  KIKKILIRNFMCHDALEVILNPNVNFIIGRNGSGKSAILTALTVGLGARANVTSRGASVK 100

Query: 63  DVTRIGSPSF 72
              + G  + 
Sbjct: 101 SFIKKGKNTA 110


>gi|325091665|gb|EGC44975.1| condensin subunit [Ajellomyces capsulatus H88]
          Length = 1447

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 16/120 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F    +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 240 PRMVITHLVMTNFKSYAGRQVVGPFHVSFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 296

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
                   +    +      F  VE               I  E++   S R  + N   
Sbjct: 297 MRQGKISALIHNSANFPDLQFCEVEVHFQEILDLPDGGHEIVPESQLIVSRRAFKNNSSK 356


>gi|296536550|ref|ZP_06898635.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296263115|gb|EFH09655.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 308

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 80/256 (31%), Gaps = 36/256 (14%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
           +  L I+ F+++A    L      T  VG NG GK+N++EA+ +    +  R  R     
Sbjct: 51  LVRLRIAGFKSFAEPTTLDVLPGLTGIVGPNGCGKSNVVEALRWAMGETNARAMRGGEMD 110

Query: 63  DVTRIG-SPSFFSTFARVEGM------------EGLADISIKLETRDDRSVRCLQINDVV 109
           DV   G +       A V  +            +  A++ I             +IN   
Sbjct: 111 DVIFAGTAHRPGRNQAEVTLLLEEALGLAPPPNQSAAELEITRRIVRGEGT-GFRINGRE 169

Query: 110 IRVVD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLDR---MVFAIDPRHRRR 158
            R  D      ++    R S +V    +  + +    ERR+ L+    +      +H   
Sbjct: 170 ARGRDVQTLFADIGSGARSSAMVSQGKVAALIAARPEERRQVLEEAAGIAGLRARKHEAE 229

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +      +R     LT               +     +   AR   ++ L+         
Sbjct: 230 LK-----LRQAEANLTRAEDLKGQLEVQRQSLQRQARQ--AARYRNLSGLTRQAEAEFFS 282

Query: 219 ENFPHIKLSLTGFLDG 234
                 +  L    +G
Sbjct: 283 VLVARAERDLVAAREG 298


>gi|225554883|gb|EEH03177.1| condensin subunit [Ajellomyces capsulatus G186AR]
          Length = 1447

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 16/120 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F    +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 240 PRMVITHLVMTNFKSYAGRQVVGPFHVSFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 296

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
                   +    +      F  VE               I  E++   S R  + N   
Sbjct: 297 MRQGKISALIHNSANFPDLQFCEVEVHFQEILDLPDGGHEIVPESQLIVSRRAFKNNSSK 356


>gi|206900328|ref|YP_002250664.1| chromosome segregation SMC protein, putative [Dictyoglomus
          thermophilum H-6-12]
 gi|206739431|gb|ACI18489.1| chromosome segregation SMC protein, putative [Dictyoglomus
          thermophilum H-6-12]
          Length = 1084

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 7  IKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62
          +K L ++ F++   + ++ F    T+  G NG GK+NIL+AI   L     +  R     
Sbjct: 4  LKSLELTNFKSFIGNNKIPFSQNFTVITGPNGSGKSNILDAIRWVLGEQRVKTLRAEKTD 63

Query: 63 DVTRIGSPSFFS--TFARVE 80
          +V   G   F+S   +A+VE
Sbjct: 64 EVI-FGGNKFYSQANYAKVE 82


>gi|198457205|ref|XP_001360588.2| GA10161 [Drosophila pseudoobscura pseudoobscura]
 gi|198135898|gb|EAL25163.2| GA10161 [Drosophila pseudoobscura pseudoobscura]
          Length = 1181

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 18/124 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + +K L +  F++Y     +  FD + T   G NG GK+NIL++I F   +S  +  R +
Sbjct: 1   MYVKKLVLDGFKSYGRRTEIDGFDREFTAITGLNGSGKSNILDSICFVLGISNLQNVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E   +IS+  +       +   IN 
Sbjct: 61  ALQDLVYKNGQAGITKATVTIVFDNTNALQCPTGYEKCREISVARQVVVGGKNK-FMING 119

Query: 108 VVIR 111
            +++
Sbjct: 120 KIVQ 123


>gi|145341165|ref|XP_001415684.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575907|gb|ABO93976.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1076

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 40/112 (35%), Gaps = 10/112 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRAS 60
           +++    +  F  +         +  + +G NG GK+  + A+     G       R  S
Sbjct: 41  MRVT---MHNFMTHKHATFEPGPRLNVVLGPNGTGKSAFVCAVCV-GLGGSPKLLGRAGS 96

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIR 111
             D  + G  S ++    + G +    I I+ +  +        ++N   ++
Sbjct: 97  LGDFVKRGEESAYTEI-TLRGRDAAKPIIIRRDFNNRAGGASTWKLNGETVK 147


>gi|94985296|ref|YP_604660.1| DNA repair protein RecN [Deinococcus geothermalis DSM 11300]
 gi|94555577|gb|ABF45491.1| DNA replication and repair protein RecN [Deinococcus geothermalis
           DSM 11300]
          Length = 555

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 85/263 (32%), Gaps = 29/263 (11%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L +        L L   +  + F G+ G GK+ I++A+  L   R     +  D+ 
Sbjct: 23  QLSRLEVRNLATIRDLTLELRSGFSAFTGETGAGKSIIVDALGLLLGSR-----ANTDLI 77

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-------CLQINDVVIRVVDELNK 118
           R G  S   T    E        S ++ T+   + R         ++ +     +    +
Sbjct: 78  RTGEDSLLVTGFWSEAGGEEFSASRRVTTQGRGTARLDGEVVSVRELQEWTSARLTIHWQ 137

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           H  +S L P+  R          R +   +      + R   D    +     L T    
Sbjct: 138 HSAVSLLTPANQRALLD------RQVPDELGTYQAAY-RAWTDARTRLE---TLRTNERE 187

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKF 236
            +     +  Q+ E+         E       L  E  +  N   I L   G L+   + 
Sbjct: 188 RARQLDLLTFQVREIAEVNPQPGEE-----EPLTAELTRLSNLETIALGAAGALELLSEG 242

Query: 237 DQSFCALKEEYAKKLFDGRKMDS 259
           + +  AL  E  + L  G K D 
Sbjct: 243 ETNAAALITEAVRALNAGAKYDE 265


>gi|255284296|ref|ZP_05348851.1| conserved hypothetical protein [Bryantella formatexigens DSM
          14469]
 gi|255265143|gb|EET58348.1| conserved hypothetical protein [Bryantella formatexigens DSM
          14469]
          Length = 663

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 5  IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          + +K L I  FR +    + L+F+      +G+N  GK+++++A+  +     +R
Sbjct: 1  MYLKKLIIKNFRIFDEMGIELIFNKGVNAIIGENNSGKSSVIDALRIVYSTVTYR 55


>gi|242814543|ref|XP_002486389.1| DNA repair protein Rad18, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218714728|gb|EED14151.1| DNA repair protein Rad18, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 1139

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 111/375 (29%), Gaps = 54/375 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++     +     R  S   
Sbjct: 99  IERVDCFNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTALTLCLGAKASVTNRGQSLKS 158

Query: 64  VTRIGSPSFFSTFARVEGMEG-----LADISIKLETRDDRSVRC-LQINDVVIRVVD--- 114
             + G  S           +G         SI +E    +S     +I +   +++    
Sbjct: 159 FIKEGKESATIIVRIKNQGDGAYMPNEYGKSIIVERSFSKSGTSGFKIKNESGKIMSTKK 218

Query: 115 ----------ELNKHLRISWLVPSMDR--IFSGLSMERRRFL--DRMVFAIDPRHR---R 157
                      L     ++ L   M R  + S    E+ +F      +  +D  +R    
Sbjct: 219 ADLDSITDYFNLQIDNPMNVLSQDMARQFLSSSSPAEKYKFFVKGVQLEQLDNDYRLIEE 278

Query: 158 RMIDFERLMRGRN---RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI-------NA 207
            +   + ++  R    ++L      +     +  Q A L  +I   R +M          
Sbjct: 279 SVDAIKEMLDSRKEDLKVLRAAKERAQRRMELSDQRATLRQRIKKLRSQMAWAQVEEQER 338

Query: 208 LSSLIMEYVQKENFP-HIKLSLTGFLDGKFDQSFCALK--EEYAKKLFDGRKMDSMSRRT 264
           +   I E V K +       S T   D K++++   L+   E      +        R  
Sbjct: 339 IRDEIQEEVAKLDGQIAFAESETAIFDRKYEEAQRELETATELLNNTKEALSKAEEERNV 398

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL--AHARLISNTTGFAPILLLDEI 322
           L          +   K +   H    EQ+ +   +    +    +          L D  
Sbjct: 399 LK---------EANAKEMAEHHNVRAEQRRIHESVKTLDSQIEDLKQHIAEENRRLADIA 449

Query: 323 SAHLDEDKRNALFRI 337
                  +R  + + 
Sbjct: 450 GGDF-ARRREEIVQR 463


>gi|154281905|ref|XP_001541765.1| chromosome segregation protein sudA [Ajellomyces capsulatus NAm1]
 gi|150411944|gb|EDN07332.1| chromosome segregation protein sudA [Ajellomyces capsulatus NAm1]
          Length = 1267

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MYIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 93/281 (33%), Gaps = 22/281 (7%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM-DRIFSGL 136
            + +    L D++  +E    R  + +Q    + +   E + ++R   ++P      F   
Sbjct: 911  KADIKRELEDLARSMEKHQRRMEKSMQKKAALTKQAAECSANIRDLGVLPDDAFTKFKNT 970

Query: 137  SME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
                   R   ++  +      +++    +    + R  L        S   SIE     
Sbjct: 971  DSNTVVKRLHKVNEALKKYSHVNKQAFEQYNGFTKQRETLTKRREELDSSQKSIEEL--- 1027

Query: 193  LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
              + +   R +    L+   +     + F  +  +  G L  +        ++E      
Sbjct: 1028 --ITVLDHRKDAAIELTFKQVSREFAQIFEKLVPAGRGRLIIQRKTDRRT-QQEDELDSD 1084

Query: 253  DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
            +    +S+     +G   S     + D+   I   S G++ +  + +  A          
Sbjct: 1085 EEEARNSVENYVGVGISVS-FNSKHDDQQ-RIQQLSGGQKSLCALALVFA-----IQACD 1137

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
             AP  L DEI A+LD   R A+ +++     +   Q   T 
Sbjct: 1138 PAPFYLFDEIDANLDAQYRTAVAQMLKSIAEETNGQFICTT 1178


>gi|327264313|ref|XP_003216958.1| PREDICTED: structural maintenance of chromosomes protein 1A-like
           isoform 2 [Anolis carolinensis]
          Length = 1234

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 18/155 (11%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +      T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQSFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTR---IGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCLQINDVVIR-------- 111
           +     +G P+    F   V   E + D +         S    +IN+ V++        
Sbjct: 64  LIHGAPVGKPAANRAFVSMVYSEENVEDRTFARVIVGGSSE--YKINNKVVQLSEYSEEL 121

Query: 112 -VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
             +  L K         +++ I      ER    +
Sbjct: 122 EKLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|322392005|ref|ZP_08065468.1| DNA repair protein RecN [Streptococcus peroris ATCC 700780]
 gi|321145103|gb|EFX40501.1| DNA repair protein RecN [Streptococcus peroris ATCC 700780]
          Length = 555

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 90/272 (33%), Gaps = 36/272 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+                       +G+E   +I I+ E          +IN  ++ + 
Sbjct: 57  HGAAKAEIEGLFSIENSRALQEIFDEQGLELGDEIIIRREI-LQNGRSVSRINGQMVNLS 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169
              +    +  +    D+          + LD         +   ++     +  + +  
Sbjct: 116 VLRSIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGNADFLELKQGYQEHFDAYRLMRKQL 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSSLIMEYVQK 218
             +        +    +E QMAE+          +K+   R +++N   ++  +      
Sbjct: 176 FEIKKNQEEHKARIEMLEFQMAEIESAALQPSEDIKLTQERDKLLNYKNIADTLTNAYAM 235

Query: 219 ENFPHIKLSLTGFLDGKFD-QSFCALKEEYAK 249
            +      SL        D +S      EY +
Sbjct: 236 LDNEEFS-SLANVRSAMNDMESLEEYDPEYRE 266


>gi|254518739|ref|ZP_05130795.1| DNA repair protein RecN [Clostridium sp. 7_2_43FAA]
 gi|226912488|gb|EEH97689.1| DNA repair protein RecN [Clostridium sp. 7_2_43FAA]
          Length = 566

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 16/115 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI  F     L + F     I  G+ G GK+ +++ I ++  G+ F      D+ R
Sbjct: 2   LLQLNIKNFALIQELSVEFGKGFNILSGETGAGKSILIDTIDYVLGGK-F----SKDLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDR-----------SVRCLQINDVVI 110
            G    F         E L ++  +L+  D+                +++N   +
Sbjct: 57  YGEEKTFVEAIFSIENEELIEVLKELDIDDEEILIISRETTLSGKSIIKVNGKSV 111


>gi|195331502|ref|XP_002032440.1| GM26555 [Drosophila sechellia]
 gi|194121383|gb|EDW43426.1| GM26555 [Drosophila sechellia]
          Length = 1194

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPVSRSCYVTAKFVLNE-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|119503163|ref|ZP_01625247.1| chromosome segregation protein [marine gamma proteobacterium
           HTCC2080]
 gi|119460809|gb|EAW41900.1| chromosome segregation protein [marine gamma proteobacterium
           HTCC2080]
          Length = 1165

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 94/283 (33%), Gaps = 45/283 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  +
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVNFPSNMCSVVGPNGCGKSNIIDAVRWVLGESSAKNLRGEA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   G+              F +T  ++ G     A+IS++             +N 
Sbjct: 61  MTDVIFNGTTHRQPVGQASIELIFDNTSGKLVGEYAAYAEISVR-RVVGREGTSEYWLNG 119

Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
              R  D         L            + R+      E R F++             +
Sbjct: 120 AKCRRRDITDLFLGTGLGPRSYAIIEQGMISRLIESKPEELRIFIEEAAG---------I 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             +    + R R             +++  +A+L  ++      ++    S   E   + 
Sbjct: 171 SKY----KERRR--ETESRMRRTLENLDR-LADLREELERNLQHLLR--QSQAAEKYAEF 221

Query: 220 NFPHIKLSLTGF-LDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                +L      L  +  Q+   + ++    L   ++ +   
Sbjct: 222 RAEERELKAQFLGLQWREHQANSKVSQQALTDLDIKQEAERAE 264


>gi|28870806|ref|NP_793425.1| hypothetical protein PSPTO_3650 [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|28854055|gb|AAO57120.1| protein of unknown function [Pseudomonas syringae pv. tomato str.
          DC3000]
          Length = 426

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + I  + I  FR+   + + F   +T+F G N  GK+N+L A++    G
Sbjct: 27 MYITRIKIKNFRSLVDVEI-FPKNYTVFAGANDSGKSNVLRALNLFFNG 74


>gi|134300409|ref|YP_001113905.1| SMC domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134053109|gb|ABO51080.1| SMC domain protein [Desulfotomaculum reducens MI-1]
          Length = 984

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 20/125 (16%)

Query: 5   IKIKFLNISEFRNYAS------LRLVFDAQHTIFVGDNGVGKTNILEAISF----LSPGR 54
           + ++ + +   ++Y        + +  +       G NG GK++++EAI +      P R
Sbjct: 1   MWVQRVRLKNIKSYGEGEKGQGVTIHLEPGINQIAGKNGAGKSSLIEAIGYALFDAEPLR 60

Query: 55  G-FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
           G  R A    + R G  +       V+      D   ++E       R  ++    IR  
Sbjct: 61  GNTRIAKNTYLLRNGCKA-----GEVDVWFWHEDCLYRVERDVGNGGRRWKV----IRQD 111

Query: 114 DELNK 118
           D+  +
Sbjct: 112 DDFIE 116



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 73/216 (33%), Gaps = 21/216 (9%)

Query: 138 MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-CSSIEAQMAEL--G 194
            ++R+ L+  +   + R +     +      +++ L   Y  ++       +++AE    
Sbjct: 742 KKKRKTLEIELLQAEQRFKEAEAAYS---PEKHKELKAIYARANLDLGEATSKLAEAVRW 798

Query: 195 VKINIARVEMINAL--------SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           V+    RVE+++ L           +    Q+      +  L    +    ++  +    
Sbjct: 799 VEEQRKRVEVMDKLLLQRDQQYKEWVRLQAQENILEKARYILKNSQE-PVARNLTSRVAA 857

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
            A+ +++    ++       G +   L V         A  S G+Q    + + LA    
Sbjct: 858 QAQTIYNTMSSEAAQFNWRSGDYT--LYVTTVSGEKRFASLSGGQQMKAALAMQLA---- 911

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           +      A     DE +  LD + R+ L   +    
Sbjct: 912 MVKEFSRAGFCAFDEPTYGLDAESRSMLAEAIGKAQ 947


>gi|332796182|ref|YP_004457682.1| ATPase-like protein [Acidianus hospitalis W1]
 gi|332693917|gb|AEE93384.1| ATPase-like protein [Acidianus hospitalis W1]
          Length = 496

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +++     + FR+ + + +       + VG NG GKTN L +I   
Sbjct: 1  MRLLEFYTNNFRSLSDVSIKDIGGLNVVVGFNGYGKTNFLSSIYLF 46


>gi|116253036|ref|YP_768874.1| DNA repair protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257684|emb|CAK08782.1| putative DNA repair protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 557

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 100/299 (33%), Gaps = 43/299 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F+   ++  G+ G GK+ +L+++S    GRG        + R
Sbjct: 2   LIQLSIRDIVLIERLDLAFETGLSVLTGETGAGKSILLDSLSLALGGRG-----DGGLVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ------------INDVVIR-VV 113
            G      T     GME  A   ++    DD      +            +ND  +   +
Sbjct: 57  HGEDKGQVTAVFDVGMEHGARTLLRENGIDDEGDLIFRRQQSADGRTKAYVNDQPVSVQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRF-----LDRMVFAIDPRHRRRMIDFERLMRG 168
                 + +       DR     +  R        L   V  I   + R   D ER ++ 
Sbjct: 117 MRQAGQMLVEIHGQHDDRALVDTNAHRTLLDAFAGLTDEVSEISQLY-RLWRDSERTLKK 175

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMI--NALSSLIMEYVQ--- 217
               +     ++ +  S   ++ +L        ++   R +M+    ++  I E  +   
Sbjct: 176 HREKVESAAREADYLRSSVEELEKLSPQDGEEEELADRRQKMMKAERIAGDIAEASEFLN 235

Query: 218 --KENFPHI-----KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR-KMDSMSRRTLIGP 268
                 PHI     +L           +    L +    +L + + ++++  R+T   P
Sbjct: 236 GNASPVPHIASLVRRLERKSHEAPGLLEDTVTLLDAALDQLSNAQMEVEAALRKTEYDP 294


>gi|83317641|ref|XP_731250.1| chromosome assembly protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23491225|gb|EAA22815.1| chromosome assembly protein xcap-c [Plasmodium yoelii yoelii]
          Length = 1463

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYA 62
           I+ L +  F++Y+ +++   F  + +  VG NG GK+NI++A+ F+     +  R+   +
Sbjct: 68  IEKLILENFKSYSGIKIIGPFYKKFSCIVGPNGSGKSNIIDAMLFVFGRRAKKIRQNKLS 127

Query: 63  DVTR 66
           D+  
Sbjct: 128 DLIH 131


>gi|256847378|ref|ZP_05552824.1| DNA repair protein RecN [Lactobacillus coleohominis 101-4-CHN]
 gi|256716042|gb|EEU31017.1| DNA repair protein RecN [Lactobacillus coleohominis 101-4-CHN]
          Length = 560

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 76/248 (30%), Gaps = 39/248 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I        L L F    T+  G+ G GK+ I++A+  L+  RG       ++ R
Sbjct: 2   LQEITIDNLAIINHLTLAFGQNMTVLTGETGAGKSIIIDAVGLLAGARG-----SQELIR 56

Query: 67  IGSPSFFS----------------TFARVEGMEGLADISIKLETRDDRSVRC--LQINDV 108
            G+                         ++  +    IS ++      ++R     IN  
Sbjct: 57  QGTDKLEVQGQFLIPDDPQYSELLDQLGIDHEDRTVIISREIHRNGRNTIRANGTLINTT 116

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFER-- 164
           ++R +      ++         R+            F    V  +  +++     + +  
Sbjct: 117 ILRKIGAPLVDIQGQ---NDNQRLLQPDQHLPMLDHFAGAEVQKLLQQYQEHYRQYRKLK 173

Query: 165 ---LMRGRNRLLTEGYFDSSWCSSIEAQMAEL-----GVKINIA-RVEMINALSSLIMEY 215
                +  N        D       E Q A+L        I+   R++    + + + + 
Sbjct: 174 KTLATKQANEQQWAQRLDMLRYQVQEIQSADLKADEEDTLISERDRLDHFQQIQNTLQQL 233

Query: 216 VQKENFPH 223
           V   N   
Sbjct: 234 VAILNGGE 241


>gi|188996432|ref|YP_001930683.1| ATPase-like protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931499|gb|ACD66129.1| ATPase-like protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 350

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          KF  I  F+N+ SL L    +  + VG N  GK+++LEAI
Sbjct: 3  KFFTIKNFKNFKSLELNDLERVNLIVGKNNSGKSSLLEAI 42


>gi|115386660|ref|XP_001209871.1| hypothetical protein ATEG_07185 [Aspergillus terreus NIH2624]
 gi|114190869|gb|EAU32569.1| hypothetical protein ATEG_07185 [Aspergillus terreus NIH2624]
          Length = 1190

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 71/260 (27%), Gaps = 15/260 (5%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + ++ F  Y S       +  + +G NG GK+ ++ AI   L  G     R     
Sbjct: 104 AIVRIKVTNFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKEPG 163

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV-------VDE 115
           +  + G            G     +  +    + D +     +N                
Sbjct: 164 EFVKHGCREATIEIELAGGPRFRRNPVVSRTIKRDGNKSTFMLNGQTASRSQVQKLAQSF 223

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
             +   +   +P                      A  P       + +RL   + +L  +
Sbjct: 224 SIQVDNLCQFLPQDKVSEFAALTPIELLHSTQRAAAGPEMIEWHENLKRLRAEQKKLQVD 283

Query: 176 GYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
              D    +++E   +M    V+    R + I     ++        +  I         
Sbjct: 284 NQGDKDLLTNLENRQEMQRPDVERMRQRAQ-IKRKIEMLEFIRPIPRYKEIYAQYNEMRQ 342

Query: 234 GKFD--QSFCALKEEYAKKL 251
            K +  +    LK E    L
Sbjct: 343 KKTEVSRELETLKAELEPAL 362


>gi|143402|gb|AAA22691.1| recombination protein (ttg start codon) [Bacillus subtilis]
 gi|1303923|dbj|BAA12579.1| RecN [Bacillus subtilis]
          Length = 576

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 20/129 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F+   T+  G+ G GK+ I++AIS L  GRG      ++  R
Sbjct: 2   LAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRG-----SSEFVR 56

Query: 67  IGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDV--VIR 111
            G                       E    ++D  I +      S + + ++N     I 
Sbjct: 57  YGEAKAELEGLFLLESGHPVLGVCAEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIA 116

Query: 112 VVDELNKHL 120
            + E+ + L
Sbjct: 117 SLREIGRLL 125


>gi|319761706|ref|YP_004125643.1| DNA repair protein recn [Alicycliphilus denitrificans BC]
 gi|317116267|gb|ADU98755.1| DNA repair protein RecN [Alicycliphilus denitrificans BC]
          Length = 557

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 65/200 (32%), Gaps = 32/200 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + + +F    +L L   A  T+  G+ G GK+ +++A+  L   R     +   V
Sbjct: 1   MALRRIALRDFVIVQALDLDLHAGFTVLTGETGAGKSILIDALQLLLGAR-----ADTGV 55

Query: 65  TRIGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--- 110
            R G+              +  A +E      D ++ L    D   +    IN +     
Sbjct: 56  IREGAQRTDICAEFDAGTAALGAWLEEAGIAHDGALLLRRTVDLQGKSRAWINGIPATAA 115

Query: 111 --RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-RMVFAIDPRHR--RRMIDFERL 165
             R + EL   +       S+ R         R  LD       +P         D ++ 
Sbjct: 116 QMRALGELLLDIHGQHAWQSLTR-----PDAVRGLLDAYAGAQAEPLAALWAAWRDAQKA 170

Query: 166 M---RGRNRLLTEGYFDSSW 182
           +   R     L +      W
Sbjct: 171 LAHAREAQDTLQQERERLQW 190


>gi|294012623|ref|YP_003546083.1| putative endonuclease [Sphingobium japonicum UT26S]
 gi|292675953|dbj|BAI97471.1| putative endonuclease [Sphingobium japonicum UT26S]
          Length = 604

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I  L I  FR   +  + F    T+ VG N  GKT ++EA++ L  GR         +
Sbjct: 1  MEIASLKIENFRGVQNGMIRFSPH-TVLVGANNCGKTTVIEALALL-FGR-------DRM 51

Query: 65 TRIGSPSFF 73
           R  +   F
Sbjct: 52 IRQLTEHDF 60


>gi|212640058|ref|YP_002316578.1| ATP-dependent endonuclease of the OLD family [Anoxybacillus
           flavithermus WK1]
 gi|212561538|gb|ACJ34593.1| ATP-dependent endonuclease of the OLD family [Anoxybacillus
           flavithermus WK1]
          Length = 669

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 76/230 (33%), Gaps = 33/230 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYADVT 65
           I  + I  FRN+  + +    +  + +G+N VGKTN L AI   L P             
Sbjct: 14  ISRVKIKNFRNFRDIDISLSHK-QVIIGENNVGKTNFLRAIQLILDPTLS---------- 62

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                 + +     +G+E   +    +E   +        N + +     ++       L
Sbjct: 63  --DEDRYLTESDFFDGLENPMENGEDIEIIIEIRGYEHNKNILSVLSDATISDDPPTLRL 120

Query: 126 VPSMDRIFSGLSMERRRFL-------DRMVFAIDPRHR-----RRMIDFERLMRGR---- 169
                 I      +   ++       D +      ++        + D E  +R      
Sbjct: 121 TYRYYPIEKEDGTKDYEYIIFQGINPDNLFKHSHRKYLNMRVINAIRDVESELRNSRRSP 180

Query: 170 -NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
            N+LL +   D +    I  ++ +   ++    ++ I  L+  I E  +K
Sbjct: 181 INQLLKQYEIDKTELKEIAEKLKQRSDEVLT--LDEIKDLTQKINERFKK 228


>gi|195446621|ref|XP_002070850.1| GK25447 [Drosophila willistoni]
 gi|194166935|gb|EDW81836.1| GK25447 [Drosophila willistoni]
          Length = 1201

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +   +D  + ++  +      + +  V+    D+   + +
Sbjct: 61  RQALLHEGTGARVISAYVEIIFDNSDNRVPIDKEE------IFLRRVIGAKKDQYFLNKK 114

Query: 122 IS 123
           + 
Sbjct: 115 VV 116



 Score = 39.5 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + +  A           AP  L DEI   LD   R A+  ++ ++     F
Sbjct: 1100 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAMHRKAVADMIHELSDTAQF 1154

Query: 347  MTGTDKSVFDSLNETAKFMRI 367
            +T T     + L    KF  +
Sbjct: 1155 ITTT--FRPELLENAHKFYGV 1173


>gi|168215443|ref|ZP_02641068.1| DNA repair protein RecN [Clostridium perfringens NCTC 8239]
 gi|182382299|gb|EDT79778.1| DNA repair protein RecN [Clostridium perfringens NCTC 8239]
          Length = 565

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F       L F    TI  G+ G GK+ +++AI+++   + F      D+ R
Sbjct: 2   LLQLTINNFALIEKASLDFKEGFTILSGETGAGKSILIDAINYVQGSK-F----NKDLIR 56

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQIND 107
            G   +F      ++  E L +I   LE   D ++   R   IN 
Sbjct: 57  TGEEKTFVEAIFSIDDNERLKEILDDLEIEYDDTLIISRETFING 101


>gi|327264311|ref|XP_003216957.1| PREDICTED: structural maintenance of chromosomes protein 1A-like
           isoform 1 [Anolis carolinensis]
          Length = 1233

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 59/155 (38%), Gaps = 18/155 (11%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F++Y     +      T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4   LKLIEIENFKSYKGRQIIGPFQSFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64  VTR---IGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCLQINDVVIR-------- 111
           +     +G P+    F   V   E + D +         S    +IN+ V++        
Sbjct: 64  LIHGAPVGKPAANRAFVSMVYSEENVEDRTFARVIVGGSSE--YKINNKVVQLSEYSEEL 121

Query: 112 -VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
             +  L K         +++ I      ER    +
Sbjct: 122 EKLGILIKARNFLVFQGAVESIAMKNPKERTALFE 156


>gi|322799968|gb|EFZ21094.1| hypothetical protein SINV_13550 [Solenopsis invicta]
          Length = 111

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63
          +  + IS F+++     +    +    +G NG GK+NI++AISF    +    R      
Sbjct: 4  LNTIEISNFKSFKGKTVISPIPRFLAIIGPNGSGKSNIMDAISFALGEKANALRVKRLNQ 63

Query: 64 VTR 66
          +  
Sbjct: 64 LIH 66


>gi|308174219|ref|YP_003920924.1| DNA repair and recombination protein [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607083|emb|CBI43454.1| factor for double strand breaks DNA repair and genetic
           recombination [Bacillus amyloliquefaciens DSM 7]
 gi|328912556|gb|AEB64152.1| factor for double strand breaks DNA repair and genetic
           recombination [Bacillus amyloliquefaciens LL3]
          Length = 576

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 89/255 (34%), Gaps = 39/255 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F+   T+  G+ G GK+ I++A+S L  GRG      ++  R
Sbjct: 2   LAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRG-----SSEFVR 56

Query: 67  IGS-----PSFFST--------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--- 110
            G         F            R +G++   D+ +     +       ++N  ++   
Sbjct: 57  YGETKAELEGLFLLDSGHPVFEVCREQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIA 116

Query: 111 ------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                 R++ +++       L+     +         +F      +    +R     + +
Sbjct: 117 ALREIGRLLLDIHGQHDNQLLMEDDKHL-----ELLDKFAGAEAESALQAYREGYDRYMK 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQKENFPH 223
           L++   +L       +     I+ Q+ E+   K+ +   E++        E  Q  NF  
Sbjct: 172 LLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQE------ERKQISNFEK 225

Query: 224 IKLSLTGFLDGKFDQ 238
           I  SL    +    +
Sbjct: 226 IYESLQNAYNALRSE 240


>gi|300120853|emb|CBK21095.2| unnamed protein product [Blastocystis hominis]
          Length = 1284

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 98/290 (33%), Gaps = 52/290 (17%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVG-----------KTNILEAISFLS-- 51
           +I  +   +F++Y     +    Q T  +G NG G           K+N+++AISF+   
Sbjct: 3   RIDRIETEDFKSYRGRHVIGPFKQFTCIIGPNGAGILLVVESHRIGKSNLMDAISFVLAI 62

Query: 52  PGRGFRRASYADVTRIGSPSFFST-------FARVEGMEGLADISIKLETRD---DRSVR 101
           P +  R  +  ++        F         F   +  +   +   ++E      +    
Sbjct: 63  PIKNLRSTNLRELVFRNESQHFVARTCSVSMFYMTDESDQNVEPGQEIEFYRQVKENGQS 122

Query: 102 CLQINDVVIRVVDELNKHLRISWLV---------PSMDRIFSGLSMERRRFLDRMVFAID 152
             +IN    R  D L+K    + LV           +  I +    +  R  + +  +  
Sbjct: 123 QFKINGKAYRYEDYLSKLADCNILVKCRNFVVYQGDVQNIAARSPEDLARLFEDLSGS-- 180

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
                    ++ L   R+RL           + ++  + +    I+    +++       
Sbjct: 181 ---ADMKQQYDELRAERDRL----------RNIMDMNLKKKYTMISEK--KLVQEQKREA 225

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            E+ +K+      L +  FL  +       L+ + A++    R+ +   R
Sbjct: 226 DEFQEKQMTLR-DLRVEYFL-WQLQYLQSNLEAQQAREAQLDRERELCER 273


>gi|302679988|ref|XP_003029676.1| hypothetical protein SCHCODRAFT_82895 [Schizophyllum commune
          H4-8]
 gi|300103366|gb|EFI94773.1| hypothetical protein SCHCODRAFT_82895 [Schizophyllum commune
          H4-8]
          Length = 1249

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          + +  + + +F++Y     +      T  +G NG GK+N+++AISF+   +    R +  
Sbjct: 1  MPLIQIEVCDFKSYRGHQTIGPFKNFTSVIGPNGAGKSNLMDAISFVLGVKSAQLRSSQL 60

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 61 KDLVYRG 67


>gi|295697470|ref|YP_003590708.1| hypothetical protein Btus_2929 [Bacillus tusciae DSM 2912]
 gi|295413072|gb|ADG07564.1| conserved hypothetical protein [Bacillus tusciae DSM 2912]
          Length = 373

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          +K   ++ FR ++ L++       + +G N  GK+++LEA+        FR +
Sbjct: 2  LKSFQVTNFRIFSDLKIETLGTVNLIIGKNNSGKSSLLEALRL----YSFRGS 50


>gi|242373526|ref|ZP_04819100.1| SMC superfamily ATP-binding chromosome segregation protein
          [Staphylococcus epidermidis M23864:W1]
 gi|242348889|gb|EES40491.1| SMC superfamily ATP-binding chromosome segregation protein
          [Staphylococcus epidermidis M23864:W1]
          Length = 1189

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K ++   F+++A    + FD   T  VG NG GK+NI +AI   L     +  R A 
Sbjct: 2  VYLKSIDAIGFKSFADHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGAK 61

Query: 61 YADVTRIGSPS 71
            D+   G+  
Sbjct: 62 MEDIIFSGAEH 72



 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 68/160 (42%), Gaps = 12/160 (7%)

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY---AKKLFDG 254
               R   +N   + + E   KE    I   +   ++G+F ++F A++  +    K+LF G
Sbjct: 997  LNERYTFLNEQRTDLRE--AKETLEQIINEMDREVEGRFKETFHAVQSHFTTVLKQLFGG 1054

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
             + +             D+IV    K +  ++  S GE+ +  + +  A  ++       
Sbjct: 1055 GQAELRLTEDDYLAAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKV-----RS 1109

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDK 352
            AP ++LDE+ A LDE       + + ++  Q  F+  T +
Sbjct: 1110 APFVILDEVEAALDEANVIRYAQYLNELSEQTQFIVITHR 1149


>gi|254372940|ref|ZP_04988429.1| conserved hypothetical protein [Francisella tularensis subsp.
          novicida GA99-3549]
 gi|151570667|gb|EDN36321.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 694

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP------GRGF 56
          +KI  L I  ++N   + +  ++    F+G NG GK+N+LEA+SF+        G+ F
Sbjct: 1  MKITRLKIKGYKNL-YIDIKHESDIMAFIGLNGSGKSNVLEALSFIFREIYKNKGKSF 57



 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           D+ + + D  +TI+  S GE+K++L+    A    ++       + +LDE  +H+  D +
Sbjct: 260 DIQIFFNDDNLTISDLSEGEKKLLLLK---AAFEFVAQ---EDSLFMLDEPDSHIHLDNK 313

Query: 332 NALFRIVTDI--GSQIFMTG 349
             +  I+       Q  +T 
Sbjct: 314 KHIIDILEQYKDNRQFIVTT 333


>gi|120601903|ref|YP_966303.1| SMC domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|120562132|gb|ABM27876.1| SMC domain protein [Desulfovibrio vulgaris DP4]
          Length = 556

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 19/133 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++ +  + +F+N   + + FD     T+ +G NG GK+N+LEA++ L     FR     
Sbjct: 1   MRLDWFWVEDFKNLKDVTIDFDESHWVTVVIGWNGTGKSNVLEALATL-----FR----- 50

Query: 63  DVTRIGSPSFFST-FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           D+  I   +       + + +    +  I ++   DR+    +I       V +L++ L+
Sbjct: 51  DLIMIQEFNGSRKPTFKYKLVYKCQNNLIAIDADPDRAQNAYRI------SVRDLSEQLQ 104

Query: 122 ISWLVPSMDRIFS 134
            + L  + +  F 
Sbjct: 105 PTLLTSNSEDYFE 117


>gi|322834142|ref|YP_004214169.1| DNA repair protein RecN [Rahnella sp. Y9602]
 gi|321169343|gb|ADW75042.1| DNA repair protein RecN [Rahnella sp. Y9602]
          Length = 553

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 97/304 (31%), Gaps = 46/304 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F A  T   G+ G GK+  ++A+      R     +   + R
Sbjct: 2   LAQLTISNFAIVRELEIDFHAGMTAITGETGAGKSIAIDALGLCLGNR-----ADGSMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-- 110
           +G+              PS     A  +  EGL D  ++    +D   R   IN   +  
Sbjct: 57  LGASRADICARFTLADTPSAKHWLAENQLDEGL-DCLLRRTISNDGRSRGF-INGTPVPL 114

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------RMVFAIDPRHRRRMIDFER 164
             + EL +HL       +   +       ++  LD       ++  +   + +      R
Sbjct: 115 SQLRELGQHLIQIHGQHAHQLLLK--PEHQKALLDAYSDQPLLLSEMRKAY-QNWHQSCR 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +    + ++E             ++ E   +           +               +
Sbjct: 172 QLAQYQQQMSERESRRQLLQYQLKELNEFAPQAGEY-----EQIDEEYKRLANSGQLLSL 226

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
             +    L    +Q+  +L      +L +  ++DS           +DLIV   D +I +
Sbjct: 227 SQNALYLLADGEEQNIVSLLYSARNQLTELAELDSKM---------NDLIVMLDDASIQV 277

Query: 285 AHGS 288
           +  S
Sbjct: 278 SEAS 281


>gi|317179398|dbj|BAJ57186.1| hypothetical protein HPF30_1089 [Helicobacter pylori F30]
          Length = 1007

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 94/289 (32%), Gaps = 44/289 (15%)

Query: 5   IKI--KFLNISEFRNYA---------SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           +K+  + L + +FRN           +          I VG+N VGK+NILEA+      
Sbjct: 1   MKLYKRVLKLHQFRNLGKNLPTELLLNSSFEKHGGLVILVGENNVGKSNILEAL------ 54

Query: 54  RGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV- 112
           + F   +  D+       +F      + +  L + + +     D S   L+I    +   
Sbjct: 55  KAF---NDTDIKLCNEEDYFKAHEFEDAVLSLKEETSRNNETIDFSCVDLKIRYKEVSKG 111

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL+K L           +F G       F++ ++          +  F +  + + +L
Sbjct: 112 LKELSKTLISYPFS-----VFIGG------FINLIMS------YGVLDSFLKFYKEKLKL 154

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                  +     +  ++ +          E+I      + E ++         +   F+
Sbjct: 155 SAFSTKQNHNL--LFKELVKY----LSGSSELIKNFCQCVREIIECNTPNKNHKTNQFFI 208

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
            GK  Q+  A    Y KKL             L      D I    D  
Sbjct: 209 IGKNRQNQLAEIYSYFKKLSASEVKPQDMGDILKKLKSLDEIFKTTDFN 257


>gi|72163067|ref|YP_290724.1| hypothetical protein Tfu_2668 [Thermobifida fusca YX]
 gi|71916799|gb|AAZ56701.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 695

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 13/101 (12%)

Query: 7   IKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++ + +  FR     A+L        T+ VG NG GK++  EA+     GR  R      
Sbjct: 86  LRRVRVQGFRGIGRAATLEFPPGPGLTVIVGRNGSGKSSFAEAVEAALTGRNLR------ 139

Query: 64  VTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
                + P+ +    R    + + +I+++L+   +  V  +
Sbjct: 140 ---WEAMPTAWRDGWRNLHCDDVTEITVELQRVGEEGVTRV 177


>gi|121582966|ref|YP_973408.1| SMC domain-containing protein [Polaromonas naphthalenivorans CJ2]
 gi|120596228|gb|ABM39666.1| SMC domain protein [Polaromonas naphthalenivorans CJ2]
          Length = 1041

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 1   MTNRIKIKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           +   + ++ L+I +FR  + S    F     +    NG+GKT++LEAI     GR     
Sbjct: 192 LATGM-LRKLSIQQFRRIHQSTEFEFGD-VNLITAPNGMGKTSLLEAIEAFYCGR----- 244

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLAD 87
               V R     F      +E  +G   
Sbjct: 245 ----VRRDPEAVFEGISGELEAPDGRRH 268



 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 70/189 (37%), Gaps = 20/189 (10%)

Query: 189  QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
            Q  E    +     ++  A +        ++N      +L+  +D   + S   +  E  
Sbjct: 843  QETEADSVLKQKLKDLAEARARQAKHEASRKNLARAAATLSKVVD---EHSLETVTSEAL 899

Query: 249  KKLFDGRKMDSMSR------RTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFL 301
            + +   +  D  S+        L       LIV   D A   +   STG++  + + IFL
Sbjct: 900  RAI-RSKVSDVFSQIHSPPEYALGNFEDGQLIVRREDGATHAVNQVSTGQRAALALSIFL 958

Query: 302  AHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFD 356
            A    ++ + G   P++L+D+  AH+D+    +    + ++      Q+F    D  +  
Sbjct: 959  A----LNESAGTAPPVILIDDPVAHIDDLNALSFLDYLRELVVSSRKQVFFATADARLAA 1014

Query: 357  SLNETAKFM 365
                   F+
Sbjct: 1015 LFQRKFDFL 1023


>gi|253578741|ref|ZP_04856012.1| SMC domain-containing protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849684|gb|EES77643.1| SMC domain-containing protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 455

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA--ISFLSPGRGFRR 58
          I+ + +  +R +   + V +++  +F G NG GKT +LEA  +   +    F+ 
Sbjct: 6  IQEIELFNYRQFEDKKFVLNSRMNVFAGKNGSGKTTVLEAANVVLGAYLAAFKT 59


>gi|125624483|ref|YP_001032966.1| DNA repair protein recN [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493291|emb|CAL98259.1| DNA repair protein recN [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071272|gb|ADJ60672.1| DNA repair protein recN [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 555

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 23/217 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I  F     + L F++  TI  G+ G GK+ I++A+S L  GR     + +D  R
Sbjct: 2   LQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGR-----ASSDFVR 56

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIR-- 111
            G+                   A +E      D  I L      + R + +IN  ++   
Sbjct: 57  HGASKAEIEGLFFFEKTPELNSALLELGFEELDSEIILRREIFANGRSVCRINGQMVNLT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            + ++ + L           + +  S  R    F D     I   ++ +  +F+ L +  
Sbjct: 117 RLRQIGEFLVDIHGQHDSQELMNPKSHLRLLDEFGDENFEVIKNNYKNKFENFKNLRQQL 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMI 205
           N         +     ++ Q  E+   +IN+   E++
Sbjct: 177 NIRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDELL 213


>gi|124024834|ref|YP_001013950.1| SMC ATPase superfamily chromosome segregation protein
          [Prochlorococcus marinus str. NATL1A]
 gi|123959902|gb|ABM74685.1| putative chromosome segregation protein, SMC ATPase superfamily
          [Prochlorococcus marinus str. NATL1A]
          Length = 1201

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  +++S F+++  S+ +  +   T+  G NG GK+NIL+ + F   L+  RG R   
Sbjct: 2  VHINHVDLSHFKSFGGSMSIPLEEGFTVVTGPNGSGKSNILDGVLFCLGLANSRGMRADR 61

Query: 61 YADVTRIG 68
            D+   G
Sbjct: 62 LPDLVNSG 69


>gi|312880403|ref|ZP_07740203.1| condensin subunit Smc [Aminomonas paucivorans DSM 12260]
 gi|310783694|gb|EFQ24092.1| condensin subunit Smc [Aminomonas paucivorans DSM 12260]
          Length = 1142

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/270 (18%), Positives = 94/270 (34%), Gaps = 38/270 (14%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRA 59
           + I  L++  F+++  S  L   +     VG NG GK+N+L+A+ + + G       R A
Sbjct: 1   MYIARLHLRGFKSFGGSHDLALGSGFVAVVGPNGSGKSNLLDALRW-TLGDSHPGRLRIA 59

Query: 60  SYADVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
             +D+   GSPS          ++  E L   +++     D S + L ++    R + EL
Sbjct: 60  RQSDLLFQGSPSLPGAKEAEVTLQLREDLRVCTLRRRVLADGSTQAL-VDGER-RTLQEL 117

Query: 117 NKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
            +  R   L                       RR         ++      +  + +   
Sbjct: 118 EETKRQFRLEGDRFAFIGQGEVAEVIQQRPSARR-------LQLETLFGIDV--YRKRRT 168

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKIN--IARVEMINALSSLIMEYVQKENFPHIK 225
                L  G  +     +  A++A    +I   +AR      L   + E  ++  +   +
Sbjct: 169 DAADRLARGQEEYQRLRAFSAELAARREEIAPEVARATRARELLDRLEELRRRYYWVRRR 228

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
                 L+   ++   AL  E    L + R
Sbjct: 229 -----HLEETLEERAAAL--ELLGGLRESR 251


>gi|156744160|ref|YP_001434289.1| hypothetical protein Rcas_4244 [Roseiflexus castenholzii DSM
          13941]
 gi|156235488|gb|ABU60271.1| hypothetical protein Rcas_4244 [Roseiflexus castenholzii DSM
          13941]
          Length = 538

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          I+ + I  FR      L    +  +F+G N  GKT ILE +   + 
Sbjct: 2  IERIVIHRFRGIRQGDLNHLRKFNLFIGPNNSGKTAILELLYLSAT 47


>gi|124804391|ref|XP_001347988.1| structural maintenance of chromosome protein, putative [Plasmodium
           falciparum 3D7]
 gi|23496242|gb|AAN35901.1|AE014840_49 structural maintenance of chromosome protein, putative [Plasmodium
           falciparum 3D7]
          Length = 1818

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 12/114 (10%)

Query: 7   IKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRASYA 62
           IK++ +S F++Y    +    ++ T  +G NG GK+NI++ I F + G   +  R  +  
Sbjct: 291 IKYIIVSNFKSYEDENIIGPFSKFTSIIGPNGSGKSNIMDCICF-ALGINNKYLRVKNLR 349

Query: 63  DVTRIGSPSFFST------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           ++                 + ++       ++ IK      + V    IND ++
Sbjct: 350 NLIYHKENEKAEDINKRICYVKIILECNKENVEIKRTLNY-KGVSNFYINDKLV 402


>gi|168214389|ref|ZP_02640014.1| DNA repair protein RecN [Clostridium perfringens CPE str. F4969]
 gi|170714117|gb|EDT26299.1| DNA repair protein RecN [Clostridium perfringens CPE str. F4969]
          Length = 565

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F       L F    TI  G+ G GK+ +++AI+++   + F      D+ R
Sbjct: 2   LLQLTINNFALIEKASLDFKEGFTILSGETGAGKSILIDAINYVQGSK-F----NKDLIR 56

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQIND 107
            G   +F      ++  E L +I   LE   D ++   R   IN 
Sbjct: 57  TGEEKTFVEAIFSIDDNERLKEILDDLEIEYDDTLIISRETFING 101


>gi|169343803|ref|ZP_02864802.1| DNA repair protein RecN [Clostridium perfringens C str. JGS1495]
 gi|169298363|gb|EDS80453.1| DNA repair protein RecN [Clostridium perfringens C str. JGS1495]
          Length = 565

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F       L F    TI  G+ G GK+ +++AI+++   + F      D+ R
Sbjct: 2   LLQLTINNFALIEKASLDFKEGFTILSGETGAGKSILIDAINYVQGSK-F----NKDLIR 56

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQIND 107
            G   +F      ++  E L +I   LE   D ++   R   IN 
Sbjct: 57  TGEEKTFVEAIFSIDDNERLKEILDDLEIEYDDTLIISRETFING 101


>gi|194333716|ref|YP_002015576.1| ATP-dependent endonuclease of the OLD family-like protein
           [Prosthecochloris aestuarii DSM 271]
 gi|194311534|gb|ACF45929.1| ATP-dependent endonuclease of the OLD family-like protein
           [Prosthecochloris aestuarii DSM 271]
          Length = 579

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 61/388 (15%), Positives = 130/388 (33%), Gaps = 54/388 (13%)

Query: 2   TNRIKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           T R ++    +  FR  +S  + +  D    + VG N  GK++IL A   +         
Sbjct: 20  TPRPRLHKFIVKNFRAISSQPVEIELDD-IVVLVGPNNAGKSSILRAYEIVMQHGS---- 74

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD-ELNK 118
               +T    P            + L ++ +     D         +  + +  D E   
Sbjct: 75  KDGRLTIDDFPEGVVD------PDNLPEVELHTIIYDKAPG-----DRWIHKTADSEWLI 123

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
             +  W  P+ D    G  +E+  + D++ +         + +  R +  R         
Sbjct: 124 REQWVWDSPNKDPKRRGFDVEKDDWDDQVPWG-----APNVANARRPLPHR--------- 169

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL-SLTGFLDGKFD 237
                +S + Q  E+   +     + I  + S   +     +    K+ +L   +    +
Sbjct: 170 -IDAFASPDTQATEIAKLVTSKLKDKITTIKSDPEQEESDYDLVLAKIKALQTKVVEATE 228

Query: 238 QSFCALKEE---YAKKLFDGR--------KMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           +    ++++   Y +K+F           + D     T    +   L+         IAH
Sbjct: 229 EEIEVIEKDISGYLEKIFPNHKVKFDAKPETDIEKTYTPFKSNADVLLGPEGGYFSEIAH 288

Query: 287 GSTGEQKVVLVG-IF-LAHARLISNTTGFAPILLLDEISAHLDE----DKRNALFRIVTD 340
             +G ++ +L   +  L+ A           +LLLDE    L      + R+ L+ + + 
Sbjct: 289 QGSGARRTLLWATLKYLSEAN--DGEGARPHVLLLDEPEICLHPSAIREARSVLYELPSA 346

Query: 341 IGSQIFMTGTDKSVFDSLNETAKFMRIS 368
              Q+ +T       D  ++    +R+S
Sbjct: 347 GNWQVMITSHSPIFIDLSHDNTTVIRVS 374


>gi|330998402|ref|ZP_08322226.1| putative DNA sulfur modification protein DndD [Paraprevotella
          xylaniphila YIT 11841]
 gi|329568508|gb|EGG50313.1| putative DNA sulfur modification protein DndD [Paraprevotella
          xylaniphila YIT 11841]
          Length = 717

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++I+ + I  F++Y     L F     + +G+ G GK+ +  A  ++  GR
Sbjct: 1  MRIRKIKIENFQSYYEIQTLEFSDGLNLIIGNGGKGKSKLFNAFYWVLFGR 51


>gi|323466280|gb|ADX69967.1| RecN ATPase involved in DNA repair [Lactobacillus helveticus H10]
          Length = 560

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 29/195 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L   R        ++ R
Sbjct: 2   LVELDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGSRS-----QKEMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F      E +A++  K     D            +    ++IN     I
Sbjct: 57  SGEQKAVITGLFVLDNQKEKIAELCEKYGLPHDDDQLVISRELAIKGRNIVRINGQLTTI 116

Query: 111 RVVDELNKHL-------RISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDF 162
            V+ E+  +L           L+    +I          F + ++ +  D RH +++ + 
Sbjct: 117 NVLREIGNYLVDIHGQHDQQILMDQDRQIDLVDDYAPDSFKEELLAYQEDYRHWQKLTNQ 176

Query: 163 ERLMRGRNRLLTEGY 177
            R +R   + L +  
Sbjct: 177 LRHLRQDAQELAQKQ 191


>gi|296083795|emb|CBI24012.3| unnamed protein product [Vitis vinifera]
          Length = 1205

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 5   IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y        F ++    VG NG GKTN   AI   LS      R+  
Sbjct: 1   MYIKQVIIEGFKSYREQIATEPFSSKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSED 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                          A VE +   +D  I ++  + R  R + +  
Sbjct: 61  RHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKK 106



 Score = 42.6 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 70/211 (33%), Gaps = 17/211 (8%)

Query: 144  LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
             +  +      +++ +  +      R  L        +   + + ++ EL   ++  + E
Sbjct: 963  CNEQLQQFSHVNKKALDQYINFTEQREELQKR----QAELDAGDEKIRELISVLDQRKDE 1018

Query: 204  MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
             I      +     +E F  +     GFL     +       +        R+ D   R 
Sbjct: 1019 SIERTFKGVAR-HFREVFSELVQGGHGFL--VMMKKKDGDHGDDDHDEDGPREADMEGRV 1075

Query: 264  TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
                  +  +      +  ++   S G++ VV + +  A           AP  L DEI 
Sbjct: 1076 EKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFA-----IQRCDPAPFYLFDEID 1130

Query: 324  AHLDEDKRNALFRIVTDI----GSQIFMTGT 350
            A LD   R A+  ++  +     +Q F+T T
Sbjct: 1131 AALDPQYRTAVGNMIRRLADMANTQ-FITTT 1160


>gi|225464350|ref|XP_002273318.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1204

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 5   IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y        F ++    VG NG GKTN   AI   LS      R+  
Sbjct: 1   MYIKQVIIEGFKSYREQIATEPFSSKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSED 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                          A VE +   +D  I ++  + R  R + +  
Sbjct: 61  RHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKK 106



 Score = 42.6 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 70/211 (33%), Gaps = 17/211 (8%)

Query: 144  LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
             +  +      +++ +  +      R  L        +   + + ++ EL   ++  + E
Sbjct: 962  CNEQLQQFSHVNKKALDQYINFTEQREELQKR----QAELDAGDEKIRELISVLDQRKDE 1017

Query: 204  MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
             I      +     +E F  +     GFL     +       +        R+ D   R 
Sbjct: 1018 SIERTFKGVAR-HFREVFSELVQGGHGFL--VMMKKKDGDHGDDDHDEDGPREADMEGRV 1074

Query: 264  TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
                  +  +      +  ++   S G++ VV + +  A           AP  L DEI 
Sbjct: 1075 EKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFA-----IQRCDPAPFYLFDEID 1129

Query: 324  AHLDEDKRNALFRIVTDI----GSQIFMTGT 350
            A LD   R A+  ++  +     +Q F+T T
Sbjct: 1130 AALDPQYRTAVGNMIRRLADMANTQ-FITTT 1159


>gi|154249194|ref|YP_001410019.1| SMC domain-containing protein [Fervidobacterium nodosum Rt17-B1]
 gi|154153130|gb|ABS60362.1| SMC domain protein [Fervidobacterium nodosum Rt17-B1]
          Length = 642

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 12/129 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFD------AQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           ++++ + +  F+ Y    + F           + V   GVGK+N+LEAI++   G+    
Sbjct: 1   MRLEKIKLYNFKQYRDFEIDFSKFPQDNKDFHVIVAKMGVGKSNLLEAINWCLYGKELFG 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
                                   +G   + + L  +D              +V D    
Sbjct: 61  NIAKP------TDPNVLSNSCLDKDGTHTVRVVLNLKDTDKNEYFINRYSKFKVSDRKAT 114

Query: 119 HLRISWLVP 127
            L   +L+ 
Sbjct: 115 SLNEVYLIF 123


>gi|110833171|ref|YP_692030.1| DNA repair protein RecN [Alcanivorax borkumensis SK2]
 gi|110646282|emb|CAL15758.1| DNA repair protein RecN [Alcanivorax borkumensis SK2]
          Length = 560

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 60/215 (27%), Gaps = 26/215 (12%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M     +  L++  F     L L  +   T   G+ G GK+ I++A+      R     +
Sbjct: 1   MQRNTMLTHLSVRHFATVDQLELEPENGLTAISGETGAGKSVIIDALGLTLGNR-----A 55

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRS---VRCLQIND--------- 107
            + + R G           +          I+ E  D+      R ++ +          
Sbjct: 56  DSSIVRHGHDRAEVLATFDLRNNAAAQQWLIERELDDEEQCLLRRTVRADGRSRAYVNGT 115

Query: 108 -VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMID 161
              +  V EL + L           +    +   R+ LD    A D       H R    
Sbjct: 116 PTPLSEVRELGERLISIHSQHEHQALLKKDA--HRQLLDNFAHARDLANSVREHWRHWQR 173

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
             R          E             ++  L ++
Sbjct: 174 ARRAHDDALNQAREQNEKEELLRFQLEELDALALQ 208


>gi|91779831|ref|YP_555039.1| hypothetical protein Bxe_B0257 [Burkholderia xenovorans LB400]
 gi|91692491|gb|ABE35689.1| conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 159

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +KI  + I  FR    + + FD   T F+G NG GK+ +L A+ +   G+
Sbjct: 1  MKIHTVRIKNFRTLKDVTIPFD-TITTFIGPNGAGKSTVLRALDWYFNGK 49


>gi|90414642|ref|ZP_01222614.1| hypothetical protein P3TCK_09258 [Photobacterium profundum 3TCK]
 gi|90324275|gb|EAS40847.1| hypothetical protein P3TCK_09258 [Photobacterium profundum 3TCK]
          Length = 388

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  L+I+ +R+   L L       +  G NG GK+N+ +A+  L+
Sbjct: 2  ITSLSINNYRSVLQLTLPLGP-LNVITGANGSGKSNLYKALKLLA 45


>gi|254883810|ref|ZP_05256520.1| predicted protein [Bacteroides sp. 4_3_47FAA]
 gi|319641515|ref|ZP_07996204.1| hypothetical protein HMPREF9011_01802 [Bacteroides sp. 3_1_40A]
 gi|254836603|gb|EET16912.1| predicted protein [Bacteroides sp. 4_3_47FAA]
 gi|317386871|gb|EFV67761.1| hypothetical protein HMPREF9011_01802 [Bacteroides sp. 3_1_40A]
          Length = 285

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK + I+ FR+Y            T+ +G NG GKT   EA+ +L
Sbjct: 1  MIIKKIVITNFRSYYGENTFELSKGLTLIIGGNGDGKTTFFEALEWL 47


>gi|195351484|ref|XP_002042264.1| GM13388 [Drosophila sechellia]
 gi|194124107|gb|EDW46150.1| GM13388 [Drosophila sechellia]
          Length = 1180

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +   +D  + ++  +      + +  V+    D+   + +
Sbjct: 61  RQSLLHEGTGARVISAYVEIIFDNSDNRVPIDKEE------IFLRRVIGAKKDQYFLNKK 114

Query: 122 IS 123
           + 
Sbjct: 115 VV 116



 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + +  +           AP  L DEI   LD   R A+  ++ ++     F
Sbjct: 1079 SGGQKSLVALALIFS-----IQKCDPAPFYLFDEIDQALDAMHRKAVANMIHELSDTAQF 1133

Query: 347  MTGTDKSVFDSLNETAKFMRI 367
            +T T     + L    KF  +
Sbjct: 1134 ITTT--FRPELLENAHKFYGV 1152


>gi|123415598|ref|XP_001304719.1| RecF/RecN/SMC N terminal domain containing protein [Trichomonas
          vaginalis G3]
 gi|121886191|gb|EAX91789.1| RecF/RecN/SMC N terminal domain containing protein [Trichomonas
          vaginalis G3]
          Length = 1031

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
          I+ + +  F  +++L +          G NG GK++IL A+S           R     +
Sbjct: 10 IRSVRMVNFMKHSNLCIELKPHVNFITGRNGSGKSSILVALSVGLGCNSRVSGRGNKLEE 69

Query: 64 VTRIGSPSFFSTFARVEGMEG 84
          + + G      T     G +G
Sbjct: 70 LIKDGQNKAIITITIQNGPDG 90


>gi|90577753|ref|ZP_01233564.1| hypothetical ATP-dependent endonuclease of the OLD family protein
           [Vibrio angustum S14]
 gi|90440839|gb|EAS66019.1| hypothetical ATP-dependent endonuclease of the OLD family protein
           [Vibrio angustum S14]
          Length = 552

 Score = 51.8 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + IS FR    L L F  + T+ +G+N  GK+++L+A+           +   + 
Sbjct: 1   MHLERIEISGFRGIKRLSLSF-KELTVLIGENAWGKSSLLDALCLAL-------SPDVEF 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
                  F    A   G E   +I I L   +D   
Sbjct: 53  YEFNFSDFHIDHAL--GNERATEIQIVLHWYEDYKG 86


>gi|300173622|ref|YP_003772788.1| DNA repair protein RecN [Leuconostoc gasicomitatum LMG 18811]
 gi|299888001|emb|CBL91969.1| DNA repair protein RecN [Leuconostoc gasicomitatum LMG 18811]
          Length = 558

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 93/294 (31%), Gaps = 44/294 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  F     + L FD+  ++  G+ G GK+ I++A+  L+ GR     + +++ R
Sbjct: 2   LENLIIENFAIIEKVALQFDSGMSVLTGETGAGKSIIIDALLMLTGGR-----ANSEMIR 56

Query: 67  IGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVRC-LQINDVVI--R 111
            GS                     +E    + D  + +      + R  ++IN V++  +
Sbjct: 57  HGSKKAILQAVFSVPKNKILIDKLIENGIDIDDGELIIYRELKHNGRSMIRINSVLVNLK 116

Query: 112 VVDELNKHL--------RISWLVP-SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
            +  + ++L            L P     +      E+          I    R      
Sbjct: 117 TLSIIGRYLVDIQGQNDTQQLLNPEEHLPLLDAYGDEQLLVTKSAYQQIFHEFRAITQRI 176

Query: 163 ERL------MRGRNRLLTEGYFD--------SSWCSSIEAQMAELGVKINIARVEMIN-A 207
            R+      +  R  LL     +        +     ++A+   L  K    R++    A
Sbjct: 177 RRIQTSQQEITQRLDLLQFQQQELEDADLQPNEENDLLDARGKLLNYKKIADRLQNAQIA 236

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           L+      V         L      D  + +    + + Y       R +D   
Sbjct: 237 LNGDQGGAVDLLAEAMQALQEIAEYDDNYAELARTIADSYYTAQEVSRDVDEQM 290


>gi|294496357|ref|YP_003542850.1| ATP-dependent endonuclease [Methanohalophilus mahii DSM 5219]
 gi|292667356|gb|ADE37205.1| ATP-dependent endonuclease of the OLD family [Methanohalophilus
          mahii DSM 5219]
          Length = 584

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ L +  +R ++   + F  +  + VG+N  GK+ I+EA+  +S    
Sbjct: 2  IEELKLENYRCFSEHTIPFSEK-NVIVGENNAGKSTIIEALRLVSIITS 49


>gi|253576327|ref|ZP_04853657.1| DNA repair protein RecN [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844220|gb|EES72238.1| DNA repair protein RecN [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 579

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 76/210 (36%), Gaps = 27/210 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I       ++ + F +   +  G+ G GK+ I++A+S ++ GRG      AD+ R
Sbjct: 2   LVHLSIRNLAVVEAVDVSFGSGFHVLTGETGAGKSIIIDALSLIAGGRG-----SADLIR 56

Query: 67  IGSP-----------SFFSTFARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRV 112
            G             +    +  +EG     D    L  R + SV+     +IN  ++ +
Sbjct: 57  YGCDKAEMEASFDLPAGHPVWTTLEGFGIAGDPGELLIIRREISVQGKSSARINGQLVNL 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-RMVFAIDP---RHRRRMIDFERLM 166
             + E+ + L           +           LD     A+DP    ++    +F R+ 
Sbjct: 117 SMLREVGEKLINLHGQHEHQTLLR--PERHLELLDAYGAEAVDPVKAAYQATYAEFVRID 174

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           +  + L                Q++E+   
Sbjct: 175 KEYHELRNTSQQALQMLDLYRFQLSEISAA 204


>gi|241762978|ref|ZP_04761040.1| putative exonuclease [Acidovorax delafieldii 2AN]
 gi|241367930|gb|EER62149.1| putative exonuclease [Acidovorax delafieldii 2AN]
          Length = 599

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  + I+ FRN+  L +  D    + VG+N VGK+N+L A+  +
Sbjct: 1  MKLTRIYINNFRNFLELDVALD-GSAVIVGENRVGKSNLLYALRLI 45


>gi|153009083|ref|YP_001370298.1| DNA repair protein RecN [Ochrobactrum anthropi ATCC 49188]
 gi|151560971|gb|ABS14469.1| DNA repair protein RecN [Ochrobactrum anthropi ATCC 49188]
          Length = 554

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L + F    ++  G+ G GK+ +L+++S     RG      A + R
Sbjct: 2   LSHLSIRDIVLIERLDIEFKTGLSVLTGETGAGKSILLDSLSLALGARG-----DASLVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRV 112
            G+                   F R  G +   DI ++     D   R    +    + +
Sbjct: 57  HGADQGQVTAVFDVPGAHPARIFLRDNGFDDDGDIILRRLQMGDGRTRVFINDQAASVAL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMR 167
           + +L + L           +    +   R  LD         A+     +   D E  + 
Sbjct: 117 LRDLGRRLVEIHGQHDDRALI--DTDLHRTLLDAFGGLEPEAAVVRERHKAWRDAETALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
                + +   +  +  S   ++ +L
Sbjct: 175 KHRARVEQAEREGDYLRSSVEELTKL 200


>gi|150397272|ref|YP_001327739.1| DNA repair protein RecN [Sinorhizobium medicae WSM419]
 gi|150028787|gb|ABR60904.1| DNA repair protein RecN [Sinorhizobium medicae WSM419]
          Length = 557

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 88/277 (31%), Gaps = 45/277 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ I+ + +        L L FD   ++  G+ G GK+ +L+++S    GRG     
Sbjct: 1   MLAQLAIRDIVL-----IERLDLSFDVGLSVLTGETGAGKSILLDSLSLALGGRG----- 50

Query: 61  YADVTRIGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQIND 107
              + R G      +               R  G++   D+  +     D   +    + 
Sbjct: 51  DGSLVRHGEDRGQVSAVFDVPAGHSARLLLRENGIDDDGDLIFRRVQSADGRTKAFINDQ 110

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDF 162
            V   +        +       DR         R  +D      D         R   D 
Sbjct: 111 PVSVQLMRQVGQTLVEIHGQHDDRALVDTDA-HRTLVDAFGGTTDAAEAVANLYRAWKDA 169

Query: 163 ERLM-RGRNR---------LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
           ER + + R +          L     +    S  + +  EL    + AR+  +  ++  I
Sbjct: 170 ERGLKKHREKVEAASREADYLRSSVEELETLSPRDGEEEELAE--SRARMMKVERIAGDI 227

Query: 213 MEYVQKENFPH----IKLSLTGFLDGKFDQSFCALKE 245
            E  +  N       +  SL   L+ K  ++   L+E
Sbjct: 228 SEAAEFLNGNASPVPLIASLVRRLERKSHEAPGLLEE 264


>gi|110802669|ref|YP_699098.1| DNA repair protein RecN [Clostridium perfringens SM101]
 gi|110683170|gb|ABG86540.1| DNA repair protein RecN [Clostridium perfringens SM101]
          Length = 565

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F       L F    TI  G+ G GK+ +++AI+++   + F      D+ R
Sbjct: 2   LLQLTINNFALIEKASLDFKEGFTILSGETGAGKSILIDAINYVQGSK-F----NKDLIR 56

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQIND 107
            G   +F      ++  E L +I   LE   D ++   R   IN 
Sbjct: 57  TGEEKTFVEAIFSIDDNERLKEILDDLEIEYDDTLIISRETFING 101


>gi|327401980|ref|YP_004342819.1| SMC domain-containing protein [Archaeoglobus veneficus SNP6]
 gi|327317488|gb|AEA48104.1| SMC domain protein [Archaeoglobus veneficus SNP6]
          Length = 885

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          IK + +   ++Y+   + F       +G+NG GKT ILEAI F +           D  R
Sbjct: 2  IKEVRLVNVKSYSDSVIRFTEGVNAIIGENGAGKTTILEAIGF-ALFDSL-PYKIGDFLR 59

Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99
           G          V   +   +I  K+E     +
Sbjct: 60 RGEKRGEIRVRLVGRDDREYEIVRKIEEGRTTA 92


>gi|304389985|ref|ZP_07371940.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
 gi|304326765|gb|EFL94008.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          curtisii ATCC 35241]
          Length = 263

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          R+ ++   I    +     L      T+ +G NG GKTN+L  I  LS  
Sbjct: 24 RMAVRSFRIRNLLSIRDTTLELVTPVTLSIGPNGAGKTNLLRGIELLSRL 73


>gi|315504944|ref|YP_004083831.1| smc domain protein [Micromonospora sp. L5]
 gi|315411563|gb|ADU09680.1| SMC domain protein [Micromonospora sp. L5]
          Length = 645

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61
          +KI  L +S F+++      +  D   T  +G NG GKT  LEA+S   SP    R+   
Sbjct: 1  MKITRLRLSNFQSFGPEPTAIDLD-GLTYVLGPNGSGKTAALEALSRLFSPLAAERKIRL 59

Query: 62 AD 63
           D
Sbjct: 60 ED 61


>gi|295689926|ref|YP_003593619.1| chromosome partition protein [Caulobacter segnis ATCC 21756]
 gi|295431829|gb|ADG11001.1| chromosome partition protein [Caulobacter segnis ATCC 21756]
          Length = 604

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +  L I  FR   S R+ F  QHT+ VG N  GKT I+EA++ L
Sbjct: 1  MHVVDLRIENFRGIRSGRVRFG-QHTVLVGPNNSGKTTIIEALALL 45


>gi|168206131|ref|ZP_02632136.1| DNA repair protein RecN [Clostridium perfringens E str. JGS1987]
 gi|182625689|ref|ZP_02953458.1| DNA repair protein RecN [Clostridium perfringens D str. JGS1721]
 gi|170662392|gb|EDT15075.1| DNA repair protein RecN [Clostridium perfringens E str. JGS1987]
 gi|177909091|gb|EDT71566.1| DNA repair protein RecN [Clostridium perfringens D str. JGS1721]
          Length = 565

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F       L F    TI  G+ G GK+ +++AI+++   + F      D+ R
Sbjct: 2   LLQLTINNFALIEKASLDFKEGFTILSGETGAGKSILIDAINYVQGSK-F----NKDLIR 56

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQIND 107
            G   +F      ++  E L +I   LE   D ++   R   IN 
Sbjct: 57  TGEEKTFVEAIFSIDDNERLKEILDDLEIEYDDTLIISRETFING 101


>gi|15922237|ref|NP_377906.1| hypothetical protein ST1922 [Sulfolobus tokodaii str. 7]
 gi|15623026|dbj|BAB67015.1| 561aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 561

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
             + I  FR  A  +L  D +  + +G N  GKT IL+AI  LS
Sbjct: 266 SEVEIENFRGIAYGKLNLD-RVNVIIGANNAGKTTILDAIYLLS 308


>gi|18310797|ref|NP_562731.1| DNA repair protein RecN [Clostridium perfringens str. 13]
 gi|18145478|dbj|BAB81521.1| DNA repair and genetic recombination protein [Clostridium
           perfringens str. 13]
          Length = 565

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F       L F    TI  G+ G GK+ +++AI+++   + F      D+ R
Sbjct: 2   LLQLTINNFALIEKASLDFKEGFTILSGETGAGKSILIDAINYVQGSK-F----NKDLIR 56

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQIND 107
            G   +F      ++  E L +I   LE   D ++   R   IN 
Sbjct: 57  TGEEKTFVEAIFSIDDNERLKEILDDLEIEYDDTLIISRETFING 101


>gi|309806780|ref|ZP_07700771.1| DNA repair protein RecN [Lactobacillus iners LactinV 03V1-b]
 gi|308166829|gb|EFO69017.1| DNA repair protein RecN [Lactobacillus iners LactinV 03V1-b]
          Length = 559

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 80/210 (38%), Gaps = 33/210 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F    T+ +G+ G GK+ I++A+S L   R     +  D+ R
Sbjct: 2   LVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSR-----AQIDMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F+  +  + L D+ I+     D            +    ++IN     I
Sbjct: 57  SGESKAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL----- 165
            V+  L+++L        M  +           ++ +    +   +  +  ++++     
Sbjct: 117 NVLKNLSQYLVDIHGQRDMQILMDQDL-----HINLLDNYANNDFKESLSQYQKIYAKWQ 171

Query: 166 -MRGRNRLLTEGYFDSSWC-SSIEAQMAEL 193
            ++ R   + +   + +     +E Q+ EL
Sbjct: 172 EIKQRLSAIRKNAQEIAQKHDILEYQLNEL 201


>gi|242783568|ref|XP_002480213.1| chromosome segregation protein SudA, putative [Talaromyces
          stipitatus ATCC 10500]
 gi|218720360|gb|EED19779.1| chromosome segregation protein SudA, putative [Talaromyces
          stipitatus ATCC 10500]
          Length = 1199

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MYIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 101/312 (32%), Gaps = 28/312 (8%)

Query: 51   SPGR-GFRRASYADVTRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDV 108
            + G+   R A        G+        R  E    L  ++  +E    R  + +Q    
Sbjct: 862  ALGKITHRLAEVDQSISEGNAQVAQLENRKSEVRNNLEALAKSIEKHQRRMEKSMQKKAA 921

Query: 109  VIRVVDELNKHLRISWLVPSMDRIFSGLSM-------ERRRFLDRMVFAIDPRHRRRMID 161
            + +   E + ++R   ++P  D  F+  S        ++   ++  +      +++    
Sbjct: 922  LTKQAAECSANIRDLGVLP--DEAFTKYSKTDSNTVVKKLHKVNESLKKYSHVNKKAFEQ 979

Query: 162  FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
            +    + R  L        +   SI+  +  L  + + A       +S           F
Sbjct: 980  YNNFTKQRETLTKRREELDASQKSIDELIMVLDQRKDEAIERTFKQVSREFHNV-----F 1034

Query: 222  PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
              +  +  G L  +         +   +   + R  +S+     +G   S       D+ 
Sbjct: 1035 EKLVPAGRGRLIIQRKTDRALRTDNDLESEDEDRH-ESVENYVGVGISVS--FNSKHDEQ 1091

Query: 282  ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
              I   S G++ +  + +  A           AP  L DEI A+LD   R A+ +++  I
Sbjct: 1092 QRIQQLSGGQKSLCALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQMLQSI 1146

Query: 342  ----GSQIFMTG 349
                  Q   T 
Sbjct: 1147 SDSTNGQFICTT 1158


>gi|254413558|ref|ZP_05027328.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179665|gb|EDX74659.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 394

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 70/403 (17%), Positives = 124/403 (30%), Gaps = 74/403 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  + I+ +R + SL +       + +G NG GK+ + +   FL      +      +
Sbjct: 1   MKIVSIKINNYRLFESLEIKDIPGFCVMIGANGTGKSTLFDIFGFLRDA--LKNNIRQAL 58

Query: 65  -TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV--DELNKHLR 121
             R G     +     E +E      +K+   +      L +     R V   E+ ++ R
Sbjct: 59  QVRGGFNEVITRGKEQEDIEIELKFRMKIVETERLVTYVLIVGQEKKRPVIKREILRYKR 118

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
             +  P               FLD   F     +         ++   N   TE      
Sbjct: 119 GEYGSPYH-------------FLD---FQKGKGYA--------IINEENFDQTEENLKRE 154

Query: 182 WCSSIEAQMAELGVKINI-----ARVEMINALSSLIMEYV-----------QKENFPHIK 225
                E Q+    +          R +  +A  SLI  +             K+      
Sbjct: 155 -----EQQLESPDILAIKGLGQFQRFKAASAFRSLIENWHVSDFHISDARGSKDALYAEH 209

Query: 226 LSLTG-FLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRRTLIGPHRSDLIVDYCD 279
           LS TG  L       +    E + + L   R          ++ T  G     LI+ + D
Sbjct: 210 LSPTGDNLAIVAQYIYQDYPEIFKQILEKMRDRVPGISQVEAKNTADG----RLILRFQD 265

Query: 280 KAIT----IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
           +A        + S G  K+    I L             P+L ++E    L      AL 
Sbjct: 266 QAFKDPFIDRYVSDGTMKMFAYLILL-------FDPKPHPLLCVEEPENQLYPTLLQALA 318

Query: 336 RIV---TDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
                 +D G Q+F++       +++   + F  I       +
Sbjct: 319 EEFASYSDRGGQVFISTHSPDFLNAVPLNSIFGLIKEQGISKV 361


>gi|84784034|gb|ABC61982.1| Rad18/SMC6-like protein [Trichomonas vaginalis]
          Length = 1039

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
          I+ + +  F  +++L +          G NG GK++IL A+S           R     +
Sbjct: 18 IRSVRMVNFMKHSNLCIELKPHVNFITGRNGSGKSSILVALSVGLGCNSRVSGRGNKLEE 77

Query: 64 VTRIGSPSFFSTFARVEGMEG 84
          + + G      T     G +G
Sbjct: 78 LIKDGQNKAIITITIQNGPDG 98


>gi|110800023|ref|YP_696498.1| DNA repair protein RecN [Clostridium perfringens ATCC 13124]
 gi|168210822|ref|ZP_02636447.1| DNA repair protein RecN [Clostridium perfringens B str. ATCC 3626]
 gi|110674670|gb|ABG83657.1| DNA repair protein RecN [Clostridium perfringens ATCC 13124]
 gi|170711155|gb|EDT23337.1| DNA repair protein RecN [Clostridium perfringens B str. ATCC 3626]
          Length = 565

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F       L F    TI  G+ G GK+ +++AI+++   + F      D+ R
Sbjct: 2   LLQLTINNFALIEKASLDFKEGFTILSGETGAGKSILIDAINYVQGSK-F----NKDLIR 56

Query: 67  IGSP-SFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQIND 107
            G   +F      ++  E L +I   LE   D ++   R   IN 
Sbjct: 57  TGEEKTFVEAIFSIDDNERLKEILDDLEIEYDDTLIISRETFING 101


>gi|300854642|ref|YP_003779626.1| hypothetical protein CLJU_c14560 [Clostridium ljungdahlii DSM
          13528]
 gi|300434757|gb|ADK14524.1| conserved hypothetical protein [Clostridium ljungdahlii DSM
          13528]
          Length = 719

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQ----HTIFVGDNGVGKTNILEAISFLSPG 53
          + I  + +  FR+Y       F  +      +  G+NG GK+ + EAI     G
Sbjct: 1  MIINSITLKNFRSYEDETTFTFTPKDNKNIVLIGGENGAGKSTLFEAIKLCIYG 54


>gi|254458045|ref|ZP_05071472.1| RecF/RecN/SMC N terminal domain, putative [Campylobacterales
          bacterium GD 1]
 gi|207085438|gb|EDZ62723.1| RecF/RecN/SMC N terminal domain, putative [Campylobacterales
          bacterium GD 1]
          Length = 789

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +  L++  F+ Y S  + F       +G NG GK+ I +AI F   G
Sbjct: 1  MILSKLHLENFKKYTSYDIEFGEGLVGIIGKNGSGKSTIFDAILFALYG 49


>gi|254429632|ref|ZP_05043339.1| chromosome segregation protein SMC [Alcanivorax sp. DG881]
 gi|196195801|gb|EDX90760.1| chromosome segregation protein SMC [Alcanivorax sp. DG881]
          Length = 1165

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 19/153 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++       F    T  VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTTNFPENLTAVVGPNGCGKSNIIDAVRWVMGESSAKHLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
            ADV   GS +            F ++ A V G  G   +IS+K +   D       +N 
Sbjct: 61  MADVIFNGSNARKPVAQASIELIFDNSDATVTGEYGKFNEISVKRQVTRDGQSNYF-LNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMER 140
              R  D ++     + L P    I     + R
Sbjct: 120 TKCRRKD-ISDIFLGTGLGPRSYAIIEQGMISR 151


>gi|154150482|ref|YP_001404100.1| SMC domain-containing protein [Candidatus Methanoregula boonei
          6A8]
 gi|153999034|gb|ABS55457.1| SMC domain protein [Methanoregula boonei 6A8]
          Length = 812

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 27/49 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +  L ++ F+ +  + + F    T  +G+NG GK++++ AI F   G
Sbjct: 1  MILDRLELTNFKRFRHVEIKFQDGITGILGNNGTGKSSLVTAIFFALYG 49



 Score = 39.9 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG--FAPILLLDEISAHLDED 329
           +L+V   D    I   S GEQ  + V + +A +R ++       +  L+ DEI    DE+
Sbjct: 701 NLLVRDVDNDYPIDRFSGGEQDDIAVALRIALSRYLAELHQVHESTFLIFDEIFGSQDEE 760

Query: 330 KRNALFRIVT 339
           +RN L   + 
Sbjct: 761 RRNNLLTALR 770


>gi|149926213|ref|ZP_01914475.1| DNA repair protein [Limnobacter sp. MED105]
 gi|149825031|gb|EDM84243.1| DNA repair protein [Limnobacter sp. MED105]
          Length = 551

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 62/199 (31%), Gaps = 31/199 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I +F     L L F    ++  G+ G GK+ +++A+S     R     + A   R
Sbjct: 2   LSSLTIQDFVIVDKLDLHFAPGMSVLSGETGAGKSILIDALSLCLGAR-----ADASQVR 56

Query: 67  IGSPSFFSTFA--------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVI-- 110
            G      T                 ++  EG   +   +E+          IN   +  
Sbjct: 57  EGCERANITAVFELNPAAKAILDEQSIDCSEGEMHLRRAIESNGRSK---AYINGTPVPA 113

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM-----VFAIDPRHRRRMIDFERL 165
             + EL++ L       +   +      E+ R LD       +     +   R+ + E+ 
Sbjct: 114 STLKELSETLIDIHGQHAFQTLAK--PGEQLRLLDDFGQHNALIQATTQTYSRLRNSEKA 171

Query: 166 MRGRNRLLTEGYFDSSWCS 184
           ++       +         
Sbjct: 172 LKQAQSSQEDRAARLENLQ 190


>gi|88603865|ref|YP_504043.1| hypothetical protein Mhun_2627 [Methanospirillum hungatei JF-1]
 gi|88189327|gb|ABD42324.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
          Length = 347

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + +  L I  F+ +  + +       +F+G N  GKT  L+A++  + G  
Sbjct: 1  MTLTSLTIRNFKKFDDVTIPLGDPV-VFIGPNNSGKTTALQALTLFAIGIS 50


>gi|307103262|gb|EFN51524.1| hypothetical protein CHLNCDRAFT_59234 [Chlorella variabilis]
          Length = 1206

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + ++ + I  F++YA   +   FD+Q     G NG GK+NIL++I F+   +     R  
Sbjct: 1   MWVREVTIDGFKSYAQRAVIGPFDSQFNAVTGLNGSGKSNILDSICFVLGIQNLQQVRAN 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++  + G          +            G E L +I++  +       + L IN 
Sbjct: 61  SLQELVYKQGQAGITKATVSIVFDNREKERGPVGYEQLDEITVTRQLVIGGRSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            V       +    +   V +   +    
Sbjct: 120 KVAEPSRVQSLFHSVQLNVNNPHFLIMQG 148


>gi|303245941|ref|ZP_07332223.1| SMC domain protein [Desulfovibrio fructosovorans JJ]
 gi|302492724|gb|EFL52592.1| SMC domain protein [Desulfovibrio fructosovorans JJ]
          Length = 541

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 72/227 (31%), Gaps = 31/227 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++IK L + +      L L       +  G+ G GK+ I+ A++FL  G   R   
Sbjct: 1   MIEVLRIKNLALID-----DLELELGPGLNVLTGETGAGKSFIVSAVNFL-TGEKMRP-- 52

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             ++ R G          V+  E   D+ ++ E         + + D +           
Sbjct: 53  --ELVRAGCDKAVVEALFVQDGE---DLILRRELAAGTGRSRIYVGDSLASRETLAAMRP 107

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           R+        +        +   LD  +    P            +  RNRL+ E    +
Sbjct: 108 RLLLHASQHGQQRLLQPAFQAALLDAFLPDPAP------------LAERNRLVKELTDIA 155

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                ++A+       +   R + +       ++ V        +LS
Sbjct: 156 GRIRELDAK----ASSLEEKR-QFLE-FQQTEIKKVNPLPGEEEELS 196


>gi|258564985|ref|XP_002583237.1| hypothetical protein UREG_06204 [Uncinocarpus reesii 1704]
 gi|237906938|gb|EEP81339.1| hypothetical protein UREG_06204 [Uncinocarpus reesii 1704]
          Length = 1483

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++Y+  ++   F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 293 PRMVITHLVLTNFKSYSGRQVVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 349

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                   +    +      F  VE      
Sbjct: 350 MRQGKISALIHNSANFPNLPFCEVEVHFQEV 380


>gi|297561265|ref|YP_003680239.1| SMC domain protein [Nocardiopsis dassonvillei subsp. dassonvillei
          DSM 43111]
 gi|296845713|gb|ADH67733.1| SMC domain protein [Nocardiopsis dassonvillei subsp. dassonvillei
          DSM 43111]
          Length = 397

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 7/95 (7%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           N+  +  +++  +R+ A   +    Q    VG NG GK+N L+A+  +S     + +  
Sbjct: 3  ANQFSLTRVHLKHYRSIAKADVRLG-QLLFLVGPNGSGKSNFLDALRLVSEA--LQTSLD 59

Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
            +   G         R          +I LE R 
Sbjct: 60 QALRSRGG----VAEVRRRSTGHPTHFAIDLEFRG 90


>gi|224009966|ref|XP_002293941.1| smc-like protein [Thalassiosira pseudonana CCMP1335]
 gi|220970613|gb|EED88950.1| smc-like protein [Thalassiosira pseudonana CCMP1335]
          Length = 1127

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 11/128 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYADV 64
           IK + +  F  Y ++      +  + VG NG GK+ IL AI     G+     RA  A +
Sbjct: 27  IKRVKLKNFLTYDAVEFFPGPRLNVVVGPNGTGKSTILCAICLGLGGQPPLLGRADDARL 86

Query: 65  -TRIGSPSFFSTFAR-------VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
             +                   V   + + D +   E+          IN      + +L
Sbjct: 87  FIKHEKDEATVEIELAPLEGKPVHVFKRVIDRAKGSESGKGAGASAYFINGHKA-TLKDL 145

Query: 117 NKHLRISW 124
            K +   +
Sbjct: 146 KKIVTEVY 153


>gi|332141271|ref|YP_004427009.1| Chromosome segregation ATPase, sms [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551293|gb|AEA98011.1| Chromosome segregation ATPase, sms [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 1195

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F  + T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLKKIKLAGFKSFVEPTTIPFPGEMTAIVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGME-GLADISIKLETRDDRSVRCLQIND 107
             DV   GS S            F ++  R+ G      ++S+K     D +     +N 
Sbjct: 61  MTDVIFNGSSSRKPVGQCSVELVFDNSAGRIAGEFANYNELSVKRLVTRD-ATSTYFLNG 119

Query: 108 VVIRVVD 114
              R  D
Sbjct: 120 TKCRRRD 126



 Score = 37.6 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A  RL       AP  LLDE+ A LD+        +
Sbjct: 1088 GKKNSTIHLLSGGEKALTALSLVFAIFRL-----NPAPFCLLDEVDAPLDDANVGRFCNL 1142

Query: 338  VTDIGSQI-FM 347
            V+++   + F+
Sbjct: 1143 VSEMSQTVQFI 1153


>gi|290559280|gb|EFD92617.1| chromosome segregation protein SMC [Candidatus Parvarchaeum
          acidophilus ARMAN-5]
          Length = 56

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          IK + +  F+++A   +L F        G NG GK+N+++A+ F+  G  
Sbjct: 4  IKQIELENFKSFAGRTKLSFINGFNAIAGANGSGKSNVIDALLFVFGGSS 53


>gi|212527382|ref|XP_002143848.1| chromosome segregation protein SudA, putative [Penicillium
          marneffei ATCC 18224]
 gi|210073246|gb|EEA27333.1| chromosome segregation protein SudA, putative [Penicillium
          marneffei ATCC 18224]
          Length = 1199

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MYIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 91/284 (32%), Gaps = 28/284 (9%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
            ++E    L  ++  +E    R  + +Q    + +   E + ++R   ++P         +
Sbjct: 891  KLEVRNDLEALAKSIEKHQRRMEKSMQKKAALTKQAAECSANIRDLGVLPDEAFTKYNKT 950

Query: 138  M-----ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
                  ++   ++  +      +++    +    + R  L        +   SI+  +  
Sbjct: 951  DSNTVVKKLHKVNESLKKYSHVNKKAFEQYNNFTKQRETLTKRREELDASQKSIDELIMV 1010

Query: 193  LGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
            L  + + A       +S       +K        + +        + D    +  E+   
Sbjct: 1011 LDQRKDEAIERTFKQVSREFHNVFEKLVPAGRGRLIIQRKTDRALRADNEIESEDED--- 1067

Query: 250  KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
                  + DS+     +G   S       D    I   S G++ +  + +  A       
Sbjct: 1068 ------RRDSVENYVGVGISVS--FNSKHDDQQRIQQLSGGQKSLCALALVFA-----IQ 1114

Query: 310  TTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTG 349
                AP  L DEI A+LD   R A+ +++  I      Q   T 
Sbjct: 1115 ACDPAPFYLFDEIDANLDAQYRTAVAQMLQSISDSTNGQFICTT 1158


>gi|207345681|gb|EDZ72426.1| YFL008Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1225

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYASLR-LVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          ++  L +S F++Y  +  + F ++  T  +G NG GK+N+++AISF+   R    R    
Sbjct: 3  RLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNIL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 KDLIYRG 69


>gi|116511684|ref|YP_808900.1| ATPase for DNA repair [Lactococcus lactis subsp. cremoris SK11]
 gi|116107338|gb|ABJ72478.1| DNA replication and repair protein RecN [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 555

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 30/231 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I  F     + L F++  TI  G+ G GK+ I++A+S L  GR     + +D  R
Sbjct: 2   LQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGR-----ASSDFVR 56

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIR-- 111
            G+                   A +E      D  I L      + R + +IN  ++   
Sbjct: 57  HGASKAEIEGLFFFEKTPELNSALLELGFEELDSEIILRREIFANGRSVCRINGQMVNLT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERL---- 165
            + ++ + L           + +  S  R    F D     I   ++ +  +F+ L    
Sbjct: 117 RLRQIGEFLVDIHGQHDSQELMNPKSHLRLLDEFGDENFEVIKNNYKNKFENFKNLRQQL 176

Query: 166 -MRGRNRLLTEGYFDSSWCSSIEAQMAELGV---KINIARVEMINALSSLI 212
            +R +N        +     + E + AE+ +   ++ + R E +N + ++ 
Sbjct: 177 NLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDELLVNRREKLNNIKNIA 227


>gi|313680022|ref|YP_004057761.1| smc domain protein [Oceanithermus profundus DSM 14977]
 gi|313152737|gb|ADR36588.1| SMC domain protein [Oceanithermus profundus DSM 14977]
          Length = 1080

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +KI+ L +  F+++A  + L FD   +  +G NG GK+N++EAI F
Sbjct: 1  MKIERLTLHGFKSFADRVELHFDRGISGVIGPNGSGKSNVVEAIRF 46


>gi|302533665|ref|ZP_07286007.1| DNA recombination and repair protein [Streptomyces sp. C]
 gi|302442560|gb|EFL14376.1| DNA recombination and repair protein [Streptomyces sp. C]
          Length = 617

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 65/215 (30%), Gaps = 33/215 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +
Sbjct: 1   MLEEMRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----A 50

Query: 61  YADVTRIGSPSFFSTFARV----------------EGMEGLADISIKLETRDDRSVRCLQ 104
              + RIG+ +       V                E  EG   IS  +   + RS   + 
Sbjct: 51  DPALVRIGAKAAVVEGRVVMPPDAPAAVRAEEAGAELDEGALLISRTVSA-EGRSRAHVG 109

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP----RHRRRMI 160
              V + ++ EL   L           +       +R+ LDR           ++     
Sbjct: 110 GRSVPVGLLSELADELVAVHGQTDQQGLLR--PARQRQALDRYAGDAVAVPLEKYAGAYR 167

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
                    + + T     +     +   + E+  
Sbjct: 168 RLRAATNELDAITTRARERAQEADLLRFGLDEIAA 202


>gi|261337847|ref|ZP_05965731.1| DNA repair protein RecN [Bifidobacterium gallicum DSM 20093]
 gi|270277314|gb|EFA23168.1| DNA repair protein RecN [Bifidobacterium gallicum DSM 20093]
          Length = 564

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 29/244 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYADV 64
           ++ L +++        +   A  T   G+ G GK+ +L A+  +  G+    R    +  
Sbjct: 2   LEELELTDLGPIPHATIQPSAGMTAITGETGAGKSMLLNAVKLICGGQADSSRVHPGS-- 59

Query: 65  TRIGSPSFFST-------FARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDEL 116
            R  +   F          A  E      D  + L        R   + N   +      
Sbjct: 60  IRAWAQGIFVANDGAAAWQAAKEAGVEDDDGELYLSRTVPAQGRSRAVLNGKTVPRTVLA 119

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR--HRRRMIDFERLMR------- 167
                +  +    D++       +R FLD      + R  + +    +   ++       
Sbjct: 120 RISEDLITVHGQADQLRIASPARQREFLDDFANNTEQRIAYEQAWRAYHAAVQRLERLRT 179

Query: 168 ------GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
                  R   L E     +       Q+ EL  K + +R+E    +   +   +   + 
Sbjct: 180 QEADMIQRADYLRESIARINQADPQPGQLNEL--KAHRSRIENAAQIEHGVSMAMAALDG 237

Query: 222 PHIK 225
              +
Sbjct: 238 APEE 241


>gi|206579422|ref|YP_002238628.1| hypothetical protein KPK_2798 [Klebsiella pneumoniae 342]
 gi|206568480|gb|ACI10256.1| conserved domain protein [Klebsiella pneumoniae 342]
          Length = 150

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I+++ I  FR+   + L       I  G NG GK+NI  AI  L+
Sbjct: 2  IQYIRIQNFRSVRDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 45


>gi|190406566|gb|EDV09833.1| structural maintenance of chromosome 1 [Saccharomyces cerevisiae
          RM11-1a]
          Length = 1225

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYASLR-LVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          ++  L +S F++Y  +  + F ++  T  +G NG GK+N+++AISF+   R    R    
Sbjct: 3  RLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNIL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 KDLIYRG 69


>gi|86130660|ref|ZP_01049260.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
 gi|85819335|gb|EAQ40494.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
          Length = 598

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRAS-YA 62
           +++  + I  FR    + + F    T  +G N VGK+++L+AI   LS  +    +  Y+
Sbjct: 1   MRLHRIKIQGFRRLKDVDITFGDA-TFLIGHNNVGKSSVLKAIGILLSGSKTLDSSEYYS 59

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
           ++      S  S     + +      ++ +E +  R  +   +N
Sbjct: 60  EL---DEESGESIPIAKKIVLEAEFRNVPIEAKTWRGFKGRILN 100


>gi|46136645|ref|XP_390014.1| hypothetical protein FG09838.1 [Gibberella zeae PH-1]
          Length = 1164

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/308 (13%), Positives = 89/308 (28%), Gaps = 59/308 (19%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +  L +         VG+NG GK+ +L A++    G+     R  S   
Sbjct: 121 IESITCFNFMCHERLHVDLGPLINFIVGENGSGKSAVLTALTLCLGGKASDTNRGGSLKS 180

Query: 64  VTRIGSPSF-FSTFARVEGME--------GLADISIKLETRDDRSVRCLQIND----VVI 110
             + G+         +  G +            +            +    N        
Sbjct: 181 FVKEGTEHGSLVVKIKNAGSDAYQPDIYGETIIVERHFSKSGSSGFKIKSANGRIISTKK 240

Query: 111 RVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRMI 160
           + VDE+++   +    P        +   + +    ++ ++      +  +D  ++    
Sbjct: 241 QEVDEISEWYALQIGNPLTVLSQDNARQFLNAATPAQKYKYFVSGVQLEQLDNDYKMSQD 300

Query: 161 DFER--LMR------------------------GRNRLLTEG----YFDSSWCSSIEAQ- 189
             E+  L+R                         +N+ + E          W   +E + 
Sbjct: 301 TLEKTSLLRDDLDSKIEQVKKEMEEAKRLSETAQKNKTMREKARHYRNQLVWYQVVEQEQ 360

Query: 190 -MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
            +AE   K  + R + I           ++      KL        + +Q     +E  A
Sbjct: 361 SLAEY-EKDLVRRAQTIIEKEQYCESTTEELRLTEEKLEQRRQTKEELEQDRGFYEESIA 419

Query: 249 KKLFDGRK 256
           K     R+
Sbjct: 420 KATEAHRE 427


>gi|226286769|gb|EEH42282.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1199

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 9/115 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHMGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                          A VE +   +D       R     + L +   +    DE 
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSD------ERFPTGKKELILRRTIGTKKDEY 109



 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 95/303 (31%), Gaps = 23/303 (7%)

Query: 57   RRASYADVTRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            R     +    GS        R  +    L D++  +E    R  + +Q    + +   E
Sbjct: 869  RLKKLEESVEKGSAEMAQLEQRKSDIKRDLEDLARSIEKHQRRMEKNMQKKAALAKQAAE 928

Query: 116  LNKHLRISWLVPSM-DRIFSGLSME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
             + ++R   ++P      F          R   ++  +      +++         + R 
Sbjct: 929  CSANIRDLGVLPDDAFTKFKNTDSNTVVKRLHKVNEALKKFSHVNKQAFEQHNGFTKQRE 988

Query: 171  RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
             L        S   SIE       + +   R +    L+   +     + F  +  +  G
Sbjct: 989  TLTKRREELDSSQKSIEEL-----ITVLDHRKDAAIELTFKQVSREFAQIFEKLVPAGRG 1043

Query: 231  FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             L  +      A +   A +L    +    S    +G   S       D+   I   S G
Sbjct: 1044 RLIIQRKTDHAARQ---ADELGSDEEEARNSVENYVGVGISVSFNSKHDEQQRIQQLSGG 1100

Query: 291  EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIF 346
            ++ +  + +  A           AP  L DEI A+LD   R A+ +++     +   Q  
Sbjct: 1101 QKSLCALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQMLKSISEETNGQFI 1155

Query: 347  MTG 349
             T 
Sbjct: 1156 CTT 1158


>gi|237729531|ref|ZP_04560012.1| recombination and repair protein [Citrobacter sp. 30_2]
 gi|190341489|gb|ACE74821.1| RecN [Citrobacter sp. OD1158_06]
 gi|226908137|gb|EEH94055.1| recombination and repair protein [Citrobacter sp. 30_2]
          Length = 553

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 87/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQNGMTVITGETGAGKSIAIDALGLCLGGR-----ADADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + FA  +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  AGATRADLCARFALKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKSEHQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
               + A L  +   AR ++ +     +  + Q+      +  L  +   + ++      
Sbjct: 148 GYANE-ASL-TQEMAARYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNEFNPQPG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|220915826|ref|YP_002491130.1| chromosome segregation protein SMC [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953680|gb|ACL64064.1| chromosome segregation protein SMC [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 1199

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 92/277 (33%), Gaps = 43/277 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           ++I+ L+I  F+++     + FD   T  VG NG GK+N+ ++I ++   +     R  S
Sbjct: 1   MRIRRLDIVGFKSFMDKTVIAFDDGVTGVVGPNGCGKSNVADSIRWVLGEQSARHLRGRS 60

Query: 61  YADVTRIGSPS------FFSTFARVEGM------EGLADISIKLETRDDRSVRC-LQIND 107
             DV   GS S             V         +      I +  R  R+      +N 
Sbjct: 61  MEDVIFNGSESKPPLSMAEVMLTFVNDRPSELPPQYQGFGEITVGRRLFRTGESEYLVNG 120

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
           V  R++D                  E  +  +I    P   R     +       +RR  
Sbjct: 121 VQARLLDVNDIFFGSGVGRTAYSIIEQGRIGQIVSARPEDRRAIIEEAAGITKYKKRREA 180

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
            +R + A      R     + L +     L      +    ++  Q+ EL ++   AR  
Sbjct: 181 AERKMEATQQNLLRVADIVQELGKQ-LESLNRQARKAEKYKALRGQIRELELRTAAARYL 239

Query: 204 MINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFDQS 239
            + A      E          +LS     LDG  +Q 
Sbjct: 240 ELTATRRAAEERQAALKAEEAELSARLAELDGALEQD 276


>gi|197121125|ref|YP_002133076.1| chromosome segregation protein SMC [Anaeromyxobacter sp. K]
 gi|196170974|gb|ACG71947.1| chromosome segregation protein SMC [Anaeromyxobacter sp. K]
          Length = 1199

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 92/277 (33%), Gaps = 43/277 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           ++I+ L+I  F+++     + FD   T  VG NG GK+N+ ++I ++   +     R  S
Sbjct: 1   MRIRRLDIVGFKSFMDKTVIAFDDGVTGVVGPNGCGKSNVADSIRWVLGEQSARHLRGRS 60

Query: 61  YADVTRIGSPS------FFSTFARVEGM------EGLADISIKLETRDDRSVRC-LQIND 107
             DV   GS S             V         +      I +  R  R+      +N 
Sbjct: 61  MEDVIFNGSESKPPLSMAEVMLTFVNDRPSELPPQYQGFGEITVGRRLFRTGESEYLVNG 120

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
           V  R++D                  E  +  +I    P   R     +       +RR  
Sbjct: 121 VQARLLDVNDIFFGSGVGRTAYSIIEQGRIGQIVSARPEDRRAIIEEAAGITKYKKRREA 180

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
            +R + A      R     + L +     L      +    ++  Q+ EL ++   AR  
Sbjct: 181 AERKMEATQQNLLRVADIVQELGKQ-LESLNRQARKAEKYKALRGQIRELELRTAAARYL 239

Query: 204 MINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFDQS 239
            + A      E          +LS     LDG  +Q 
Sbjct: 240 ELTATRRAAEERQAALKAEEAELSARLAELDGALEQD 276


>gi|126654737|ref|ZP_01726271.1| DNA repair protein; RecN [Cyanothece sp. CCY0110]
 gi|126623472|gb|EAZ94176.1| DNA repair protein; RecN [Cyanothece sp. CCY0110]
          Length = 588

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 83/257 (32%), Gaps = 42/257 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L L F     +  G+ G GK+ IL+AI  +  G+         + R
Sbjct: 2   LSLLQIKNFALVDRLTLPFGQGLNVLTGETGAGKSIILDAIDVVLGGK-----VNNRLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADI--SIKLETRDDRSV---RCLQINDVVIRVVDELNKHL- 120
            G+    S  A  EG   +       +++  DD +V   R L +    +R    +N  L 
Sbjct: 57  QGTQ-HASLEATFEGNTKVLQWLKEQEIDPLDDGTVVCLRELSLTGETVRSRSRINGVLV 115

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +  +    + +    +  +   L       +      +     +++ RN          
Sbjct: 116 NLQLMGQFRNFLVEITAQGQTVQLMDATRQRE---LLDLYGGNVILKQRN---------- 162

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                    + E   +      + +        E +Q+ +    +L        + D++ 
Sbjct: 163 ---------LVESAHENWKKTEKALEKRKKSEQERLQRLDLLEYQLK-------ELDEAQ 206

Query: 241 CALKEEYAKKLFDGRKM 257
            +  +E  ++L   R  
Sbjct: 207 LSDPDEL-EQLEQERDR 222


>gi|293395481|ref|ZP_06639765.1| recombination protein F [Serratia odorifera DSM 4582]
 gi|291422165|gb|EFE95410.1| recombination protein F [Serratia odorifera DSM 4582]
          Length = 373

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA---ISFLSPGR 54
          + I+ LN+  FR+   ++L    +  +  G NG GK+N+ +A   I   + GR
Sbjct: 9  MTIQRLNLKGFRSIRDMQLDLG-RLNVISGPNGCGKSNLYKAVRLIHQAAAGR 60


>gi|284048219|ref|YP_003398558.1| DNA repair protein RecN [Acidaminococcus fermentans DSM 20731]
 gi|283952440|gb|ADB47243.1| DNA repair protein RecN [Acidaminococcus fermentans DSM 20731]
          Length = 574

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 92/253 (36%), Gaps = 23/253 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     LR+ F     +F G+ G GK+ +++A S +   R     +  D  R
Sbjct: 2   LNSLEVHNFALIDRLRVDFTPGFNVFTGETGAGKSILIDAFSIVLGSR-----ASVDYLR 56

Query: 67  IGSPSFF-STFARVEGMEGLADISIKLE--------------TRDDRSVRCLQINDVVIR 111
            G+ +++      +EG+E + DI  +L+              T   +S   +    V + 
Sbjct: 57  PGADAYWIQAVFDIEGLETVHDILRELDLDLGEDTLFLRRKVTAGGKSQAFVNERQVPVY 116

Query: 112 VVDELNKHLRISWLVPSMDRIFS-GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           V+  L   L           + + G ++      D  + A+  +++ + + +++      
Sbjct: 117 VLSRLASQLVDIHGQHENQTLLAPGAALTILDHWDPRLQALLEKYQEKFVAYDKARETVK 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
           + L +    +     +E ++ E+         +    L   + +   +E           
Sbjct: 177 KWLLKDAHQTEDLERLEGEIKEIDEARIQPGED--EQLRETVRKLSNQEKILQAVGEAHH 234

Query: 231 FLDGKFDQSFCAL 243
           +L+G  D    AL
Sbjct: 235 YLEGGEDSVPSAL 247


>gi|302406530|ref|XP_003001101.1| chromosome segregation protein sudA [Verticillium albo-atrum
          VaMs.102]
 gi|261360359|gb|EEY22787.1| chromosome segregation protein sudA [Verticillium albo-atrum
          VaMs.102]
          Length = 1081

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F     + VG NG GK+N   AI F
Sbjct: 1  MYIKQIIIQGFKSYKDQTVIEPFSPGTNVIVGRNGSGKSNFFAAIRF 47


>gi|259501560|ref|ZP_05744462.1| DNA repair protein RecN [Lactobacillus iners DSM 13335]
 gi|302191466|ref|ZP_07267720.1| DNA repair protein [Lactobacillus iners AB-1]
 gi|259167078|gb|EEW51573.1| DNA repair protein RecN [Lactobacillus iners DSM 13335]
          Length = 559

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 80/210 (38%), Gaps = 33/210 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F    T+ +G+ G GK+ I++A+S L   R     +  D+ R
Sbjct: 2   LVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSR-----AQIDMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F+  +  + L D+ I+     D            +    ++IN     I
Sbjct: 57  SGESKAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL----- 165
            V+  L+++L        M  +           ++ +    +   +  +  ++++     
Sbjct: 117 NVLKNLSQYLVDIHGQRDMQILMDQDL-----HINLLDNYANNDFKESLSQYQKIYAKWQ 171

Query: 166 -MRGRNRLLTEGYFDSSWC-SSIEAQMAEL 193
            ++ R   + +   + +     +E Q+ EL
Sbjct: 172 EIKQRLSAIRKNAQEIAQKHDILEYQLNEL 201


>gi|238894635|ref|YP_002919369.1| RecF/RecN/SMC domain protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238546951|dbj|BAH63302.1| RecF/RecN/SMC domain protein [Klebsiella pneumoniae subsp.
          pneumoniae NTUH-K2044]
          Length = 381

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
            RI I+++ I  FR+   + L       I  G NG GK+NI  AI  L+
Sbjct: 16 AGRIMIQYIRIQNFRSVKDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 64


>gi|229552479|ref|ZP_04441204.1| DNA repair protein RecN [Lactobacillus rhamnosus LMS2-1]
 gi|258539849|ref|YP_003174348.1| DNA repair protein RecN [Lactobacillus rhamnosus Lc 705]
 gi|229314216|gb|EEN80189.1| DNA repair protein RecN [Lactobacillus rhamnosus LMS2-1]
 gi|257151525|emb|CAR90497.1| DNA repair protein RecN [Lactobacillus rhamnosus Lc 705]
          Length = 567

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 82/248 (33%), Gaps = 35/248 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F    +L L F +  T   G+ G GK+ I++A+  L+ GRG       D  R
Sbjct: 2   LQELAIHDFAIIDNLALSFQSGMTALTGETGAGKSIIIDAVGLLAGGRG-----SVDFIR 56

Query: 67  IGS-----------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            G+                  +    F  ++  +    +  +   R  R+V  +  + V 
Sbjct: 57  TGASKASLEGLFDAQANPLTEAKLQAFGVMDPDQNDTVLLQRELFRSGRNVCRVNGHLVN 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLS--MERRRFLDRMVFAIDPRHRRRMIDFERLM- 166
              +  + + L          ++    +       F    +  I  ++     +++R + 
Sbjct: 117 TATLKAIGETLVDIHGQNEHQQLMHSETHLGLLDAFAGDDLLKIRHQYAEVYQNYQRTLQ 176

Query: 167 --RGRNRLLTEGYFDSSWC--SSIEAQMAEL----GVKINIARVEM--INALSSLIMEYV 216
             + +     E             E Q A+L       ++  R  +     +++ + E  
Sbjct: 177 AVKQKQANEQEWAQRLDMLKFQVSEIQSADLQPHEDTDLSTERDRLANFQRINAALQESY 236

Query: 217 QKENFPHI 224
              +   +
Sbjct: 237 ALLSDEEV 244


>gi|194909859|ref|XP_001982025.1| GG12364 [Drosophila erecta]
 gi|190656663|gb|EDV53895.1| GG12364 [Drosophila erecta]
          Length = 1130

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-- 63
           K+  + ++ F  +++L + F       VG+NG GK+ ++ A++ L      R  + A   
Sbjct: 106 KVISMRLTNFMCHSNLFIEFGPNINFLVGNNGSGKSAVITALA-LGLTSSARATNRASNI 164

Query: 64  --VTRIGSPSF 72
             + + G  S 
Sbjct: 165 QKLIKNGEASA 175


>gi|188588958|ref|YP_001921306.1| DNA sulfur modification protein DndD [Clostridium botulinum E3
          str. Alaska E43]
 gi|188499239|gb|ACD52375.1| DNA sulfur modification protein DndD [Clostridium botulinum E3
          str. Alaska E43]
          Length = 719

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHT---IFVG-DNGVGKTNILEAISFLSPG 53
          + I  + +  FR+Y       F  +     + VG +NG GK+ + EAI     G
Sbjct: 1  MIINSITLKNFRSYEDKTTFSFTPKGNKNIVLVGGENGAGKSTLFEAIKLCIYG 54



 Score = 40.7 bits (94), Expect = 0.40,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 86/222 (38%), Gaps = 31/222 (13%)

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-- 214
           R   ++  L+   + +L        + S +   + +   KI +   E I   S +I +  
Sbjct: 477 RARNEYTTLL-QNSNVLDMSTQLIEYLSELLTNLTK--DKITLIENEFIKIFSKIIRKNN 533

Query: 215 ---------------YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
                          Y+ K+      L++   L   FD       +++ + L +  K++S
Sbjct: 534 YVNSIVIDDNFNTTLYINKDYNSTEILNVINNLG--FDGLIKKYGDKFLEDLLNHYKVNS 591

Query: 260 MSRRTLIGPHRSDLIVDYC--DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317
                L     SD+  +Y      I I   S GE+++ ++ +  A    I  ++G     
Sbjct: 592 HKE--LKSLISSDISFNYICLSTKININDFSNGEKQIYILCLIWA----IIKSSGVEIPF 645

Query: 318 LLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGTDKSVFDSL 358
           ++D   A +DE  RN+L    +  I  Q+ +  T+K + + L
Sbjct: 646 IIDTPYARIDETHRNSLTTAYLPKISKQVIILSTNKEIDNEL 687


>gi|171692189|ref|XP_001911019.1| hypothetical protein [Podospora anserina S mat+]
 gi|170946043|emb|CAP72844.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1262

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F D+  T  +G NG GK+N ++AISF+   +    R +  
Sbjct: 3  KLLRLELFNFKSYKGHHTLLFGDSYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSSHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|260773331|ref|ZP_05882247.1| DNA repair protein RecN [Vibrio metschnikovii CIP 69.14]
 gi|260612470|gb|EEX37673.1| DNA repair protein RecN [Vibrio metschnikovii CIP 69.14]
          Length = 554

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 26/181 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+S    GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALSLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
                   + A +           E  + L      L     +  R    IN   +    
Sbjct: 57  QDEEKTEVSAAFILDNNLHATRWLEDNDLLDGKECILRRIISKDGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++       +   LD+    +D         ++       ++
Sbjct: 117 LKSLGQLLINIHGQHAHQQLMK--PELQLAMLDQYAGHLDLLKQTRLAYQQWRQVNHHLK 174

Query: 168 G 168
            
Sbjct: 175 Q 175


>gi|297726705|ref|NP_001175716.1| Os09g0121000 [Oryza sativa Japonica Group]
 gi|255678683|dbj|BAH94444.1| Os09g0121000 [Oryza sativa Japonica Group]
          Length = 398

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/266 (19%), Positives = 87/266 (32%), Gaps = 27/266 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA--ISFLSPGRG-FRRASYAD 63
           I  + +  F  ++SL +          G NG GK+ +L A  I+F S  +   R A+  D
Sbjct: 5   ISRIRLENFMCHSSLHIELGQHVNFITGQNGSGKSAVLTALCIAFGSRAKSTQRAAALKD 64

Query: 64  VTRIGSPSFFSTFARVEGMEGLADIS-----IKLETRDDRS-----VRCLQINDVVIRVV 113
             +                E           ++LE R   S     ++    N V  R  
Sbjct: 65  FIKTDCSYAAIIVDINNQGEDAFKPEVYGDLVRLERRITESSSSMFLKDQHGNKVAHRKD 124

Query: 114 D--ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
           D  E+ +H  I    P           + R FL       + + + +      L++  N 
Sbjct: 125 DLIEIIEHFNIDVENPC----VIMSQDKSREFLHSG----NNKDKFKFFFKATLLQHVND 176

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL           + ++ + EL   I  A +E ++ L   I      E   H   +L   
Sbjct: 177 LLLAIR---ELLDNADSVVQELEKSIKPAMME-LDELQQKIKNMEHIEEIAHEIDNLKKK 232

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM 257
           L   +        EE   KL   ++ 
Sbjct: 233 LAWSWVYDVDRQIEEQTVKLLKLKER 258


>gi|296104286|ref|YP_003614432.1| DNA recombination and repair protein RecN [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|190341509|gb|ACE74831.1| RecN [Enterobacter cloacae]
 gi|295058745|gb|ADF63483.1| DNA recombination and repair protein RecN [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 553

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           +G+              P+        +  +G   +  ++ + D RS   +    V +  
Sbjct: 57  MGANRADLCARFSLKDTPAALRWLEENQLEDGRECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLMR 167
           + EL + L       +  ++      +++  LD       +  +   H R+     R + 
Sbjct: 117 LRELGQLLIQIHGQHAHQQLVK--PEQQKSLLDGYAGEYALTQLMAEHYRQWHQSCRELA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
              +   E    +        Q+ EL
Sbjct: 175 QHQQQSQERAARAELLEY---QLKEL 197


>gi|199597158|ref|ZP_03210590.1| DNA repair ATPase [Lactobacillus rhamnosus HN001]
 gi|258508672|ref|YP_003171423.1| DNA repair protein RecN [Lactobacillus rhamnosus GG]
 gi|199591962|gb|EDZ00037.1| DNA repair ATPase [Lactobacillus rhamnosus HN001]
 gi|257148599|emb|CAR87572.1| DNA repair protein RecN [Lactobacillus rhamnosus GG]
 gi|259649978|dbj|BAI42140.1| DNA repair protein RecN [Lactobacillus rhamnosus GG]
          Length = 567

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 82/248 (33%), Gaps = 35/248 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F    +L L F +  T   G+ G GK+ I++A+  L+ GRG       D  R
Sbjct: 2   LQELAIHDFAIIDNLALSFQSGMTALTGETGAGKSIIIDAVGLLAGGRG-----SVDFIR 56

Query: 67  IGS-----------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            G+                  +    F  ++  +    +  +   R  R+V  +  + V 
Sbjct: 57  TGASKASLEGLFDAQANPLTEAKLQAFGVMDPDQNDTVLLQRELFRSGRNVCRVNGHLVN 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLS--MERRRFLDRMVFAIDPRHRRRMIDFERLM- 166
              +  + + L          ++    +       F    +  I  ++     +++R + 
Sbjct: 117 TATLKAIGETLVDIHGQNEHQQLMHSETHLGLLDAFAGDDLLKIRHQYAEVYQNYQRTLQ 176

Query: 167 --RGRNRLLTEGYFDSSWC--SSIEAQMAEL----GVKINIARVEM--INALSSLIMEYV 216
             + +     E             E Q A+L       ++  R  +     +++ + E  
Sbjct: 177 AVKQKQANEQEWAQRLDMLKFQVSEIQSADLQPHEDTDLSTERDRLANFQRINAALQESY 236

Query: 217 QKENFPHI 224
              +   +
Sbjct: 237 ALLSDEEV 244


>gi|315419961|gb|ADU15839.1| RecF [Klebsiella pneumoniae]
          Length = 381

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
            RI I+++ I  FR+   + L       I  G NG GK+NI  AI  L+
Sbjct: 16 AGRIMIQYIRIQNFRSVKDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 64


>gi|298710041|emb|CBJ31759.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 443

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 98/309 (31%), Gaps = 47/309 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           I  L +  F  Y   + VF  +  + VG NG GK+ ++ AI+ L  G       R  + +
Sbjct: 37  IVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIA-LGLGGSPKVLGRADNLS 95

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV---------VIRVV 113
                G     S    +   +G      +  +R + S     IN            IR +
Sbjct: 96  AFVMHGVKEDASVTVELYMPDGNNLHVTRTFSRKNNSSNW-HINGRSHSTKEVENKIRAL 154

Query: 114 DELNKHLRISW----------LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                +L                P    + +  ++      D  +  ID      + D  
Sbjct: 155 GIQVDNLCTMLPQDKVGDFSGFTPDKLLLETEKALSGTELYDPHMKLID------LQD-- 206

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL--GVKINIARVEMINALSSLIM-------E 214
                + +   E     +    +E++++ L   V+    R E  N L            E
Sbjct: 207 ----SKGKSQNEEETMRTKLEGMESELSTLEKDVQRYQERQEKQNRLELHRQRKVWAGVE 262

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
            ++ +     +L     ++ K  Q      ++  KK    ++    + +T +   R+DL 
Sbjct: 263 TLRNQGIEAKQLEKDAVVELKMAQQADQPLQDEYKKWERQQERLRGAEKTRV-KRRTDLE 321

Query: 275 VDYCDKAIT 283
               DK   
Sbjct: 322 KAIGDKNDK 330


>gi|256268869|gb|EEU04220.1| Smc1p [Saccharomyces cerevisiae JAY291]
          Length = 1225

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYASLR-LVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          ++  L +S F++Y  +  + F ++  T  +G NG GK+N+++AISF+   R    R    
Sbjct: 3  RLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNIL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 KDLIYRG 69


>gi|254854266|ref|ZP_05243614.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|258607658|gb|EEW20266.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
          Length = 279

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 5   IKI--KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +KI  K L +  F+N+ +L + ++ Q T   G NG GKT+I EA+++L  G         
Sbjct: 1   MKIVFKQLTLKNFKNHKNLVVDYE-QVTQISGKNGFGKTSIGEAVTWLLYGTDLLGTKIE 59

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                  P        V  +       + L  +  ++ +   IN+V  R   E    +  
Sbjct: 60  P-----QPLGTEEEVHVSLLINADGKDLLLTKKQKKTAKYA-INEVP-RKATEFADMIDS 112

Query: 123 SW 124
            +
Sbjct: 113 LF 114


>gi|225684681|gb|EEH22965.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 1199

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 9/115 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHMGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                          A VE +   +D       R     + L +   +    DE 
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSD------ERFPTGKKELILRRTIGTKKDEY 109



 Score = 40.7 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 95/303 (31%), Gaps = 23/303 (7%)

Query: 57   RRASYADVTRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            R     +    GS        R  +    L D++  +E    R  + +Q    + +   E
Sbjct: 869  RLKKLEESVEKGSAEMAQLEQRKSDIKRDLEDLARSIEKHQRRMEKNMQKKAALAKQAAE 928

Query: 116  LNKHLRISWLVPSM-DRIFSGLSME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
             + ++R   ++P      F          R   ++  +      +++         + R 
Sbjct: 929  CSANIRDLGVLPDDAFTKFKNTDSNTVVKRLHKVNEALKKFSHVNKQAFEQHNGFTKQRE 988

Query: 171  RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
             L        S   SIE       + +   R +    L+   +     + F  +  +  G
Sbjct: 989  TLTKRREELDSSQKSIEEL-----ITVLDHRKDAAIELTFKQVSREFAQIFEKLVPAGRG 1043

Query: 231  FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             L  +      A +   A +L    +    S    +G   S       D+   I   S G
Sbjct: 1044 RLIIQRKTDHAARQ---ADELGSDEEEARNSVENYVGVGISVSFNSKHDEQQRIQQLSGG 1100

Query: 291  EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIF 346
            ++ +  + +  A           AP  L DEI A+LD   R A+ +++     +   Q  
Sbjct: 1101 QKSLCALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQMLKSISEETNGQFI 1155

Query: 347  MTG 349
             T 
Sbjct: 1156 CTT 1158


>gi|209524448|ref|ZP_03272997.1| SMC domain protein [Arthrospira maxima CS-328]
 gi|209495239|gb|EDZ95545.1| SMC domain protein [Arthrospira maxima CS-328]
          Length = 351

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 5  IKIKFLNISEFRNYASLRLVF-------DAQHTIFVGDNGVGKTNILEAISF---LSPGR 54
          +KI+ +N+  F+ +  L L F            + +G NG GKT+IL+AI+    ++ GR
Sbjct: 1  MKIESINLQYFKKFRHLELDFTDSETGLAKDLIVLIGMNGAGKTSILQAIAATLGMATGR 60

Query: 55 GF 56
            
Sbjct: 61 IH 62


>gi|195504888|ref|XP_002099272.1| GE10818 [Drosophila yakuba]
 gi|194185373|gb|EDW98984.1| GE10818 [Drosophila yakuba]
          Length = 1131

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           K+  + ++ F  +++L + F       VG+NG GK+ ++ A++ L          R +S 
Sbjct: 107 KVISMRLTNFMCHSNLFIEFGPNINFLVGNNGSGKSAVITALA-LGLTSSARATNRASSI 165

Query: 62  ADVTRIGSPSF 72
             + + G  S 
Sbjct: 166 QKLIKNGEASA 176


>gi|194891236|ref|XP_001977456.1| GG18245 [Drosophila erecta]
 gi|190649105|gb|EDV46383.1| GG18245 [Drosophila erecta]
          Length = 1200

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +   +D  + ++  +      + +  V+    D+   + +
Sbjct: 61  RQSLLHEGTGARVISAYVEIIFDNSDNRVPIDKEE------IFLRRVIGAKKDQYFLNKK 114

Query: 122 IS 123
           + 
Sbjct: 115 VV 116



 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + +  +           AP  L DEI   LD   R A+  ++ ++     F
Sbjct: 1099 SGGQKSLVALALIFS-----IQKCDPAPFYLFDEIDQALDAMHRKAVANMIHELSDTAQF 1153

Query: 347  MTGTDKSVFDSLNETAKFMRI 367
            +T T     + L    KF  +
Sbjct: 1154 ITTT--FRPELLENAHKFYGV 1172


>gi|154281267|ref|XP_001541446.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150411625|gb|EDN07013.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1212

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 53/177 (29%), Gaps = 28/177 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++    G+     R  S   
Sbjct: 170 IERVDCYNFMCHEHFSVDLGPLINFIVGKNGSGKSAILTALTLCLGGKASVTNRGQSLKS 229

Query: 64  VTRIGSPSFFSTFARVEGMEGLAD----------ISIKLETRDDRSVRCL----QINDVV 109
             + G  S  +   R++     A           I            +      ++    
Sbjct: 230 FIKEGKDSA-TIVVRIKNQGDSAYNPNEFGNSIIIERHFSRNGSSGFKIKSSSGRVVSTK 288

Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR 156
              +D +  +  +    P        +   + S    E+ +F      +  +D  +R
Sbjct: 289 KSELDSITDYFALQIDNPMNVLSQDMARQFLSSSSPSEKYKFFVKGVQLEQLDQDYR 345


>gi|71834208|gb|AAZ41776.1| RE14758p [Drosophila melanogaster]
          Length = 1200

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +   +D  + ++  +      + +  V+    D+   + +
Sbjct: 61  RQSLLHEGTGARVISAYVEIIFDNSDNRVPIDKEE------IFLRRVIGAKKDQYFLNKK 114

Query: 122 IS 123
           + 
Sbjct: 115 VV 116



 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + +  +           AP  L DEI   LD   R A+  ++ ++     F
Sbjct: 1099 SGGQKSLVALALIFS-----IQKCDPAPFYLFDEIDQALDAMHRKAVANMIHELSDTAQF 1153

Query: 347  MTGTDKSVFDSLNETAKFMRI 367
            +T T     + L    KF  +
Sbjct: 1154 ITTT--FRPELLENAHKFYGV 1172


>gi|323343433|ref|ZP_08083660.1| ATPase [Prevotella oralis ATCC 33269]
 gi|323095252|gb|EFZ37826.1| ATPase [Prevotella oralis ATCC 33269]
          Length = 722

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          + IK + I  FR+Y   +    F    T+ +GDNG GKT   +A+ +L     F      
Sbjct: 1  MIIKEIRIKNFRSYYGDNNIFEFSDGLTLILGDNGDGKTTFFDALQWL-----FNTTIDK 55

Query: 63 DVTRI 67
               
Sbjct: 56 GNIDH 60


>gi|314923694|gb|EFS87525.1| DNA repair protein RecN [Propionibacterium acnes HL001PA1]
 gi|314967047|gb|EFT11146.1| DNA repair protein RecN [Propionibacterium acnes HL082PA2]
 gi|315092750|gb|EFT64726.1| DNA repair protein RecN [Propionibacterium acnes HL060PA1]
 gi|315103778|gb|EFT75754.1| DNA repair protein RecN [Propionibacterium acnes HL050PA2]
 gi|327327181|gb|EGE68957.1| DNA repair protein RecN [Propionibacterium acnes HL103PA1]
          Length = 559

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 111/369 (30%), Gaps = 40/369 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L   +  T   G+ G GKT ++  I  L   +     +
Sbjct: 1   MIRSVRIRGLGVID-----ETVLEPSSALTAVTGETGAGKTMVVTGIGLLLGDK-----A 50

Query: 61  YADVTRIGSPSFFS-------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              + R G                RV  + G  +    +  R   S R   +        
Sbjct: 51  DTGLVRHGCDRAVVEAVLDTPDAGRVSELGGTVEDGEVICARHITSRRSRALLGGAQVTA 110

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +L   +     +         +   R+     R     +     RH +   +F R    
Sbjct: 111 SQLAHIVGDQVTIHGQSEQVRLVDAARQLDVVDRAAGDELAGHLSRHAQLWSEF-RAASQ 169

Query: 169 RNRLLTEGYFDSSW-CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIK 225
           R + L E    +      +  ++ E+           ++I  ++ L      +E+     
Sbjct: 170 RLQRLNEDRAGAEMEREVLTRRVGEVDAVDPKPHEDDDLIAEIAGLQAAQSIRESLNKAD 229

Query: 226 LSLTGFLDGKFDQSFC-ALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           + L G       Q    AL E+   +L      D R  +   R   +    +DL      
Sbjct: 230 VLLNGVETSTGPQPGALALLEQAVHELDGTGDADPRAAELAERARQMSYDLTDLAASVAG 289

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FR 336
            A          Q++  +G  LA  + +          LL+  +A  D  +   L     
Sbjct: 290 HAARAEAD---PQRLEELGGRLAAIQRLLRARTTTLDDLLESTAA--DRHRLAELDPGAT 344

Query: 337 IVTDIGSQI 345
            +  +G Q+
Sbjct: 345 DLDSLGQQV 353


>gi|195479261|ref|XP_002100825.1| GE15959 [Drosophila yakuba]
 gi|194188349|gb|EDX01933.1| GE15959 [Drosophila yakuba]
          Length = 1200

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +   +D  + ++  +      + +  V+    D+   + +
Sbjct: 61  RQSLLHEGTGARVISAYVEIIFDNSDNRVPIDKEE------IFLRRVIGAKKDQYFLNKK 114

Query: 122 IS 123
           + 
Sbjct: 115 VV 116



 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + +  +           AP  L DEI   LD   R A+  ++ ++     F
Sbjct: 1099 SGGQKSLVALALIFS-----IQKCDPAPFYLFDEIDQALDAMHRKAVANMIHELSDTAQF 1153

Query: 347  MTGTDKSVFDSLNETAKFMRI 367
            +T T     + L    KF  +
Sbjct: 1154 ITTT--FRPELLENAHKFYGV 1172


>gi|195059330|ref|XP_001995612.1| GH17849 [Drosophila grimshawi]
 gi|193896398|gb|EDV95264.1| GH17849 [Drosophila grimshawi]
          Length = 1200

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS     +R   
Sbjct: 1   MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHQRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +   +D  + ++  +      + +  V+    D+   + +
Sbjct: 61  RQALLHEGTGARVISAYVEIIFDNSDNRVPIDKEE------IYLRRVIGAKKDQYFLNKK 114

Query: 122 IS 123
           + 
Sbjct: 115 VV 116



 Score = 38.0 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + +  +           AP  L DEI   LD   R A+  ++ ++     F
Sbjct: 1099 SGGQKSLVALALIFS-----IQKCDPAPFYLFDEIDQALDAMHRKAVADMIHELSDTAQF 1153

Query: 347  MTGTDKSVFDSLNETAKFMRI 367
            +T T     + L    KF  +
Sbjct: 1154 ITTT--FRPELLENAHKFYGV 1172


>gi|151940755|gb|EDN59142.1| stability of minichromosomes [Saccharomyces cerevisiae YJM789]
          Length = 1225

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYASLR-LVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          ++  L +S F++Y  +  + F ++  T  +G NG GK+N+++AISF+   R    R    
Sbjct: 3  RLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNIL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 KDLIYRG 69


>gi|319426764|gb|ADV54838.1| chromosome segregation protein SMC [Shewanella putrefaciens 200]
          Length = 1145

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 83/225 (36%), Gaps = 32/225 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ F    T  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPFLQALTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND 107
            +DV   GS +            F +   R+ G     +  I ++ +  R       +N 
Sbjct: 61  MSDVIFNGSSARKPVSVAGVELVFENKEGRLAGQYASYE-EISVKRQVSRDGESWYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++        R++ R
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAG--ISRYKER 176

Query: 159 MIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
             +   R+   R  L   G   S     ++ ++A+        R 
Sbjct: 177 RRETENRIRHTRENLERLGDIRSELGKQLD-KLAQQAKAAKQYRE 220



 Score = 39.9 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 65/204 (31%), Gaps = 19/204 (9%)

Query: 156  RRRMIDFERLMRGR-NRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSLI 212
               + + + ++    N L  EG  D   S    I  ++  LG     A  E         
Sbjct: 901  LAALQEQQIVLSQIINTLPAEGSPDKWQSDLDHIRQKIVRLGAINLAAIEEFEQQSERKS 960

Query: 213  MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY---AKKLFDGRKMDSMSRRTLIGPH 269
                Q E+      +L   +     ++    K  +    + L           R  +   
Sbjct: 961  YLDHQDEDLNKGLATLEEAIRKIDKETRTRFKATFDSVNEDLGRLFPKVFGGGRAYLALT 1020

Query: 270  RSDLIVDY--------CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
              DL+             K  TI   S GE+ +  + +  A  RL       AP  +LDE
Sbjct: 1021 EDDLLETGVTIMAQPPGKKNSTIHLLSGGEKALTALSLVFAIFRL-----NPAPFCMLDE 1075

Query: 322  ISAHLDEDKRNALFRIVTDIGSQI 345
            + A LD+       R++ ++   +
Sbjct: 1076 VDAPLDDANVERFCRLLKEMSQSV 1099


>gi|167647768|ref|YP_001685431.1| hypothetical protein Caul_3807 [Caulobacter sp. K31]
 gi|167350198|gb|ABZ72933.1| conserved hypothetical membrane spanning protein [Caulobacter sp.
          K31]
          Length = 691

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE 45
          ++IK + I  FR    + +  + + T+ VG N  GKT+I E
Sbjct: 1  MRIKHVEIENFRLLRKVAIGLEERTTLIVGRNNSGKTSIAE 41


>gi|88603148|ref|YP_503326.1| hypothetical protein Mhun_1890 [Methanospirillum hungatei JF-1]
 gi|88188610|gb|ABD41607.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
          Length = 389

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 91/266 (34%), Gaps = 27/266 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK L +  ++N++S+ + F ++    VG N  GK+N L+   FL        + +  +
Sbjct: 1   MMIKRLLLKNWKNFSSVDISFQSRM-FIVGPNASGKSNFLDVFRFLHDISKQGGSLFDAL 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ---INDVVIRVVDELNKHLR 121
            R G  S     A         +I + +E   +  V  +    IN       D    +  
Sbjct: 60  ERRGGISKLRCLAA--RTNSQIEIEVHIEEPGETPVNWIYRLGINRQPHGKHDPCVSYEI 117

Query: 122 I------SWLVPSMDRIFS---------GLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
           +          P +D +             +    +F     F  D R+   +     L+
Sbjct: 118 VIKNGETILSRPDVDDLKDETLLSQTHLEQTSANGKFRVLASFLSDIRYFHIVPQ---LI 174

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           R           D  +  +    +A+       +R++ I     +++ ++ + +F   K 
Sbjct: 175 RHPQAFTGPNLPDDPYGRNFLELLAKTPENTRNSRLKNIEKRLRILVPHLTELSFTTDKF 234

Query: 227 ---SLTGFLDGKFDQSFCALKEEYAK 249
               L    +    ++    +E+++ 
Sbjct: 235 GIPHLEARYEHWRPRAGKQQEEQFSD 260


>gi|24642555|ref|NP_523374.2| Chromosome-associated protein, isoform A [Drosophila melanogaster]
 gi|22832385|gb|AAF48625.2| Chromosome-associated protein, isoform A [Drosophila melanogaster]
          Length = 1200

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +   +D  + ++  +      + +  V+    D+   + +
Sbjct: 61  RQSLLHEGTGARVISAYVEIIFDNSDNRVPIDKEE------IFLRRVIGAKKDQYFLNKK 114

Query: 122 IS 123
           + 
Sbjct: 115 VV 116



 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + +  +           AP  L DEI   LD   R A+  ++ ++     F
Sbjct: 1099 SGGQKSLVALALIFS-----IQKCDPAPFYLFDEIDQALDAMHRKAVANMIHELSDTAQF 1153

Query: 347  MTGTDKSVFDSLNETAKFMRI 367
            +T T     + L    KF  +
Sbjct: 1154 ITTT--FRPELLENAHKFYGV 1172


>gi|14318514|ref|NP_116647.1| Smc1p [Saccharomyces cerevisiae S288c]
 gi|417778|sp|P32908|SMC1_YEAST RecName: Full=Structural maintenance of chromosomes protein 1;
          AltName: Full=DA-box protein SMC1
 gi|172621|gb|AAA16595.1| chromosome segregation protein [Saccharomyces cerevisiae]
 gi|836746|dbj|BAA09230.1| chromosome segregation protein SMC1 [Saccharomyces cerevisiae]
 gi|285811887|tpg|DAA12432.1| TPA: Smc1p [Saccharomyces cerevisiae S288c]
 gi|740138|prf||2004373A head rod tail protein
          Length = 1225

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYASLR-LVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          ++  L +S F++Y  +  + F ++  T  +G NG GK+N+++AISF+   R    R    
Sbjct: 3  RLVGLELSNFKSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNHLRSNIL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 KDLIYRG 69


>gi|148263901|ref|YP_001230607.1| ATP-dependent OLD family endonuclease [Geobacter uraniireducens
          Rf4]
 gi|146397401|gb|ABQ26034.1| ATP-dependent endonuclease of the OLD family-like protein
          [Geobacter uraniireducens Rf4]
          Length = 640

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          T+ +K+  + I+ FR+   + +  D+  T+ +G N  GKT+ L+AI 
Sbjct: 29 TSGVKVTDVRIANFRSLMDIEVSLDS-LTVLIGANNAGKTSFLDAIY 74


>gi|227878888|ref|ZP_03996793.1| DNA repair protein RecN [Lactobacillus crispatus JV-V01]
 gi|256849776|ref|ZP_05555207.1| DNA repair protein [Lactobacillus crispatus MV-1A-US]
 gi|262046525|ref|ZP_06019486.1| DNA repair protein RecN [Lactobacillus crispatus MV-3A-US]
 gi|227861522|gb|EEJ69136.1| DNA repair protein RecN [Lactobacillus crispatus JV-V01]
 gi|256713265|gb|EEU28255.1| DNA repair protein [Lactobacillus crispatus MV-1A-US]
 gi|260572974|gb|EEX29533.1| DNA repair protein RecN [Lactobacillus crispatus MV-3A-US]
          Length = 560

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 93/259 (35%), Gaps = 55/259 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG       ++ R
Sbjct: 2   LVELDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRG-----QKEMIR 56

Query: 67  IGSPSFFST-----------FARVEGMEGLADISIKLETRDD---RSVRCLQINDV--VI 110
            G P    T            A +    GL     +L    +   +    ++IN     I
Sbjct: 57  SGEPKSIITGLFELDNQKEKIAELCDQYGLPHDDDQLVISRELAVKGRNVVRINGQLTTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+  +L +        +I     M++ R +D +        +  +  +++      
Sbjct: 117 NVLREIGNYL-VDIHGQHDQQIL----MDQDRQIDLVDNYAPDSFKTDLTTYQK------ 165

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                   D +    + +Q+                 L     E  QK++    + +   
Sbjct: 166 --------DFTEWQKLTSQL---------------RHLRQDAQELAQKQDILQFQNNELE 202

Query: 231 FLDGKFDQSFCALKEEYAK 249
             D +  Q    L+EEY +
Sbjct: 203 AADLEDPQEDEKLEEEYNE 221


>gi|194764821|ref|XP_001964527.1| GF23004 [Drosophila ananassae]
 gi|190614799|gb|EDV30323.1| GF23004 [Drosophila ananassae]
          Length = 1236

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
          ++F+ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27 LQFIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64 VTR 66
          +  
Sbjct: 87 LIH 89


>gi|168698986|ref|ZP_02731263.1| chromosome partition protein Smc [Gemmata obscuriglobus UQM 2246]
          Length = 1231

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 7  IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
          +K L +  F+++A      F    T  VG NG GK+N+++A+ ++      +  R    A
Sbjct: 2  LKRLELVGFKSFADKTRFDFAPGVTGVVGPNGSGKSNVVDAVRWILGEQSPKSLRGGEMA 61

Query: 63 DVTRIGSPS 71
          DV   GS S
Sbjct: 62 DVIFNGSSS 70


>gi|159029955|emb|CAO90334.1| recN [Microcystis aeruginosa PCC 7806]
          Length = 584

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 28/208 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYADVT 65
           +  L I  F     L L F +   +  G+ G GK+ IL+AI  +  G+   R      V 
Sbjct: 2   LSCLQIENFTLIDRLELTFGSGLNVLTGETGAGKSIILDAIDIVLGGKVNHR------VI 55

Query: 66  RIGSPSFF---------STFARVEGME------GLADISIKLETRDDRSVRCLQINDVVI 110
           R GS                A +E  E          IS +L   ++      +IN VV 
Sbjct: 56  RQGSQQSTLEATFSLTPELIAWLESQEIDPLEDNSLTISRELVITNNSLRSRSRINGVVA 115

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDPRHRRRMIDFERL 165
                      +  +      +    +  +R  LD      ++   +        +++  
Sbjct: 116 NRQQMAQIRDFLVEITAQGQTVQLMDANRQRELLDLYGGESLLRQREKV-ATAYANWQES 174

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               N  L            +E Q+ EL
Sbjct: 175 KNSLNNRLQSEQNRLQRLDLLEYQLKEL 202


>gi|330889910|gb|EGH22571.1| chromosome segregation protein SMC [Pseudomonas syringae pv. mori
          str. 301020]
          Length = 119

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1  MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61 YADVTRIGSPS 71
            DV   GS S
Sbjct: 61 MTDVIFNGSTS 71


>gi|86157102|ref|YP_463887.1| condensin subunit Smc [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773613|gb|ABC80450.1| condensin subunit Smc [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1199

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 96/287 (33%), Gaps = 43/287 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           ++I+ L+I  F+++     + FD   T  VG NG GK+N+ ++I ++   +     R  S
Sbjct: 1   MRIRRLDIVGFKSFMDKTVVAFDDGVTGVVGPNGCGKSNVADSIRWVLGEQSARHLRGRS 60

Query: 61  YADVTRIGSPS------FFSTFARVEGM------EGLADISIKLETRDDRSVRC-LQIND 107
             DV   GS S             V         +      I +  R  R+      +N 
Sbjct: 61  MEDVIFNGSESKPPLSMAEVMLTFVNDRPSELPPQYQGFGEITVGRRLFRTGESEYLVNG 120

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
           V  R++D                  E  +  +I    P   R     +       +RR  
Sbjct: 121 VQARLLDVNDIFFGSGVGRTAYSIIEQGRIGQIVSARPEDRRAIIEEAAGITKYKKRREA 180

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
            +R + A      R     + L +     L      +    ++ AQ+ EL ++   AR  
Sbjct: 181 AERKMEATQQNLLRVADIVQELGKQ-LESLNRQARKAEKYKALRAQVRELELRTAAARYL 239

Query: 204 MINALSSLIMEYVQKENFPHIKLSLT-GFLDGKFDQSFCALKEEYAK 249
            + A      E          +L+     LDG  +Q      E  A+
Sbjct: 240 ELTATRRAAEERQATLKAEEAELTARLAELDGALEQDRALTGESEAR 286


>gi|42527004|ref|NP_972102.1| chromosome partition protein SmC, putative [Treponema denticola
           ATCC 35405]
 gi|41817428|gb|AAS12013.1| chromosome partition protein SmC, putative [Treponema denticola
           ATCC 35405]
          Length = 980

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           + +K L I  F+++   +++ F    T  +G NG GK+N+++A+ ++   +  R      
Sbjct: 1   MFLKNLEIFGFKSFPDRVKIEFADGITALLGPNGCGKSNVVDAVKWVLGEQSSRTLRADK 60

Query: 63  --DVTRIGSP-----SFFSTFARVEGMEG-----LADISIKLETRDDRSVRCLQIND-VV 109
             DV   G+      +       +   +G     L++I+IK              N    
Sbjct: 61  MEDVIFNGTEKRNQLNIAEVTLTISNEKGLLNLDLSEIAIKRRLYRSGESEYFINNQPAK 120

Query: 110 IRVVDELNKHLRI------SWLVPSMDRIFSGLSMERRRFLD 145
           +R + EL     +            +D+I S    ERR   +
Sbjct: 121 LREIRELFWDTGVGKAAYSVMEQGKIDQILSSKPEERRYLFE 162


>gi|325922072|ref|ZP_08183869.1| hypothetical protein XGA_2885 [Xanthomonas gardneri ATCC 19865]
 gi|325547456|gb|EGD18513.1| hypothetical protein XGA_2885 [Xanthomonas gardneri ATCC 19865]
          Length = 691

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE 45
          ++IK + I  FR    + +  + + T+ VG N  GKT+I E
Sbjct: 1  MRIKHVEIENFRLLRKVSVGLEERTTLIVGRNNSGKTSIAE 41


>gi|317155217|ref|XP_001824397.2| DNA repair protein Rad18 [Aspergillus oryzae RIB40]
          Length = 1142

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 55/176 (31%), Gaps = 26/176 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +    +         VG NG GK+ +L AI+    G+     R  S   
Sbjct: 103 LERVECYNFMCHDHFYVELGPLINFIVGKNGSGKSAVLTAITLCLGGKASATNRGQSLKS 162

Query: 64  VTRIGSPSFFSTFARVEGMEGL-----ADISIKLETRDDRSV----RCLQINDVVIRV-- 112
             + G  S           +G         SI +E    ++     +    N  ++    
Sbjct: 163 FIKEGKESATIVVRIKNQGDGAYMPDDYGKSIVIERHFTKAGTSGFKIKAENGRIVSTKK 222

Query: 113 --VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHR 156
             +D +     + +  P        +   + S    E+ +F      +  +D  +R
Sbjct: 223 AELDAIIDFFTLQFDNPMNVLSQDMARQFLSSSSPAEKYKFFVKGVQLEQLDQDYR 278


>gi|256617907|ref|ZP_05474753.1| DNA repair protein RecN [Enterococcus faecalis ATCC 4200]
 gi|256597434|gb|EEU16610.1| DNA repair protein RecN [Enterococcus faecalis ATCC 4200]
          Length = 560

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 98/266 (36%), Gaps = 33/266 (12%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N++ ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +
Sbjct: 2   NKM-LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SS 55

Query: 63  DVTRIGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQIND 107
           D  R G+        FS     E  + L ++ I+ E          +   ++V  +    
Sbjct: 56  DYIRQGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRI 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDF 162
           V I  +  + ++L           +      ER       F  + + A+  ++ +   ++
Sbjct: 116 VNITNLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEY 172

Query: 163 ERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             L   +R R R   E             ++A     +     +++   + L       +
Sbjct: 173 RALEAKVRKRQRNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIAD 231

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKE 245
                  +L G  D   D+   ++ E
Sbjct: 232 ALTISYAALNGEDDSSLDKIGTSMNE 257


>gi|239610513|gb|EEQ87500.1| chromosome segregation protein sudA [Ajellomyces dermatitidis ER-3]
 gi|327349059|gb|EGE77916.1| chromosome segregation protein sudA [Ajellomyces dermatitidis ATCC
           18188]
          Length = 1199

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 9/115 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHMGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                          A VE +   +D       R     + L +   +    DE 
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSD------ERFPTGRKELILRRTIGTKKDEY 109



 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 92/285 (32%), Gaps = 30/285 (10%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM-DRIFSGL 136
            + +    + D++  +E    R  + +Q    + +   E + ++R   ++P      F   
Sbjct: 891  KADVKRDMEDLAKSIEKHQRRMEKSMQKKAALTKQAAECSANIRDLGVLPDDAFTKFKNT 950

Query: 137  SME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
                   R   ++  +      +++    +    + R  L        S   SIE  +  
Sbjct: 951  DSNTVVKRLHKVNEALKKYSHVNKQAFEQYNGFTKQRETLTKRREELDSSQKSIEELITV 1010

Query: 193  LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
            L  + + A       +S    +  +K             +     +     K + A++L 
Sbjct: 1011 LDHRKDAAIELTFKQVSREFAQIFEKL------------VPAGRGRLIIQRKTDRAQQLG 1058

Query: 253  DGRKMDSMSRRTLI----GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
            +    D    R+ +    G   S       D    I   S G++ +  + +  A      
Sbjct: 1059 NELDSDEEEERSSVENYVGVGISVSFNSKHDDQQRIQQLSGGQKSLCALALVFA-----I 1113

Query: 309  NTTGFAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
                 AP  L DEI A+LD   R A+ +++     +   Q   T 
Sbjct: 1114 QACDPAPFYLFDEIDANLDAQYRTAVAQMLKSISEETNGQFICTT 1158


>gi|261195444|ref|XP_002624126.1| chromosome segregation protein sudA [Ajellomyces dermatitidis
           SLH14081]
 gi|239587998|gb|EEQ70641.1| chromosome segregation protein sudA [Ajellomyces dermatitidis
           SLH14081]
          Length = 1199

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 39/115 (33%), Gaps = 9/115 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHMGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                          A VE +   +D       R     + L +   +    DE 
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSD------ERFPTGRKELILRRTIGTKKDEY 109



 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 88/281 (31%), Gaps = 22/281 (7%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM-DRIFSGL 136
            + +    + D++  +E    R  + +Q    + +   E + ++R   ++P      F   
Sbjct: 891  KADVKRDMEDLAKSIEKHQRRMEKSMQKKAALTKQAAECSANIRDLGVLPDDAFTKFKNT 950

Query: 137  SME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
                   R   ++  +      +++    +    + R  L        S   SIE  +  
Sbjct: 951  DSNTVVKRLHKVNEALKKYSHVNKQAFEQYNGFTKQRETLTKRREELDSSQKSIEELITV 1010

Query: 193  LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
            L  + + A       +S    +  +K   P  +  L         Q      +   ++  
Sbjct: 1011 LDHRKDAAIELTFKQVSREFAQIFEKL-VPAGRGRLIIQRKTDRAQQLGDELDSDEEEER 1069

Query: 253  DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
               +       ++    + D           I   S G++ +  + +  A          
Sbjct: 1070 SSVENYVGVGISVSFNSKHD-------DQQRIQQLSGGQKSLCALALVFA-----IQACD 1117

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
             AP  L DEI A+LD   R A+ +++     +   Q   T 
Sbjct: 1118 PAPFYLFDEIDANLDAQYRTAVAQMLKSISEETNGQFICTT 1158


>gi|222632791|gb|EEE64923.1| hypothetical protein OsJ_19783 [Oryza sativa Japonica Group]
          Length = 1103

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  Y  L      +  + VG NG GK++++ AI+           R +S A 
Sbjct: 40  IVEIELCNFMTYDHLTCRPGPRLNLVVGPNGSGKSSLVCAIALALAADPAILGRASSVAA 99

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-IND--VVIRVVDELNKHL 120
             + G  S      ++       D  + +  + D + +    ++   V  + V +L K  
Sbjct: 100 FVKRGEDSG---HVKISLRGNTPDHKLCITRKVDTNNKSEWQLDGTTVPKKEVIDLIKKF 156

Query: 121 RISW-----LVPSM 129
            I        +P  
Sbjct: 157 NIQVNNLTQFLPQD 170


>gi|168181360|ref|ZP_02616024.1| acyl-coA dehydrogenase [Clostridium botulinum Bf]
 gi|182675483|gb|EDT87444.1| acyl-coA dehydrogenase [Clostridium botulinum Bf]
          Length = 645

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 34/200 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M N I +K L+I  F+    L L F     IF GDNG GKT + ++ +FL          
Sbjct: 1   MVNSIFLKNLSIKNFKGIKDLNLDFGKATNIF-GDNGTGKTTVQDSFTFLL--------- 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEG----LADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                     S  ST   V+ ++     + ++   ++   D   + + +  V      ++
Sbjct: 51  ------FDKDSKDSTKFDVQPLDKNNNPIHNLETVIQATLDIDGKEVVLKRVYKEKYSKV 104

Query: 117 NKHLRISWLVPSMDRIFSGLSM---ERRRFLDRMV------FAIDPRHRRRMIDFERLMR 167
               +  +         + +     E + F+  ++         +P++   +       +
Sbjct: 105 RGTAKQEFKGYESAYYVNDVPKKVGEYKTFISELLDEKLFKLITNPQYFANLP-----WK 159

Query: 168 GRNRLLTEGYFDSSWCSSIE 187
            R  ++T+   D  W S I+
Sbjct: 160 ERRAIITDIVGDMDWNSVID 179


>gi|32470073|ref|NP_863015.1| putative RecF protein [Escherichia coli]
 gi|134044814|ref|YP_001102240.1| RecF/RecN/SMC domain-containing protein [Yersinia pestis biovar
          Orientalis str. IP275]
 gi|28629330|gb|AAO49610.1| putative RecF protein [Escherichia coli]
 gi|44443465|gb|AAS47047.1| hypothetical protein-like protein [Enterobacter cloacae]
 gi|133905348|gb|ABO42110.1| RecF/RecN/SMC domain protein [Yersinia pestis biovar Orientalis
          str. IP275]
 gi|259089726|gb|ACV91689.1| RecF/RecN/SMC N-terminal domain protein [Klebsiella pneumoniae]
 gi|259089735|gb|ACV91697.1| RecF/RecN/SMC N-terminal domain protein [Klebsiella pneumoniae]
          Length = 381

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
            RI I+++ I  FR+   + L       I  G NG GK+NI  AI  L+
Sbjct: 16 AGRIMIQYIRIQNFRSVKDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 64


>gi|240275919|gb|EER39432.1| chromosome segregation protein [Ajellomyces capsulatus H143]
          Length = 1219

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MYIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 91/281 (32%), Gaps = 22/281 (7%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM-DRIFSGL 136
            + +    L D++  +E    R  + +Q    + +   E + ++R   ++P      F   
Sbjct: 911  KADIKRELEDLARSMEKHQRRMEKSMQKKAALTKQAAECSANIRDLGVLPDDAFTKFKNT 970

Query: 137  SME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
                   R   ++  +      +++    +    + R  L        S   SIE     
Sbjct: 971  DSNTVVKRLHKVNEALKKYSHVNKQAFEQYNGFTKQRETLTKRREELDSSQKSIEEL--- 1027

Query: 193  LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
              + +   R +    L+   +     + F  +  +  G L  +        ++E      
Sbjct: 1028 --ITVLDHRKDAAIELTFKQVSREFAQIFEKLVPAGRGRLIIQRKTDRRN-QQEDELDSD 1084

Query: 253  DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
            +    +S+     +G   S       D    I   S G++ +  + +  A          
Sbjct: 1085 EEEARNSVENYVGVGISVS--FNSKHDDQQRIQQLSGGQKSLCALALVFA-----IQACD 1137

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
             AP  L DEI A+LD   R A+ +++     +   Q   T 
Sbjct: 1138 PAPFYLFDEIDANLDAQYRTAVAQMLKSIAEETNGQFICTT 1178


>gi|190341573|gb|ACE74863.1| RecN [Enterobacter sp. E466]
          Length = 516

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 91/257 (35%), Gaps = 40/257 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F A  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHAGMTAITGETGAGKSIAIDALGLCLGGR-----ADADMVR 56

Query: 67  IGS-------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+              +    +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  PGAGRADLCARFSLKDTTAALRWLEANQLDDGRECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++  LD         +       E  +  +  
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PDHQKTLLD--------GYAG-----EHALTQKMA 160

Query: 172 LLTEGYFDSSWCSSIEAQMAE---LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
                +  S    ++  Q+++      ++   +++ +N  + L  E+ ++ +  + +L+ 
Sbjct: 161 ATYREWHQSCRALALHQQLSQERAARAELLAYQLKELNEFNPLPGEF-EQIDEEYKRLAN 219

Query: 229 TGFLDGKFDQSFCALKE 245
           +G L     Q+  AL +
Sbjct: 220 SGQLLSTSQQALNALAD 236


>gi|73998561|ref|XP_851818.1| PREDICTED: similar to Structural maintenance of chromosome 3
           (Chondroitin sulfate proteoglycan 6)
           (Chromosome-associated polypeptide) (hCAP) (Bamacan)
           (Basement membrane-associated chondroitin proteoglycan)
           isoform 2 [Canis familiaris]
          Length = 1228

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 919  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 976

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 977  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1036

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1037 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQS 1096

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1097 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1146

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1147 PAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 1193


>gi|311695975|gb|ADP98848.1| DNA repair protein RecN [marine bacterium HP15]
          Length = 559

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 38/239 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +S +     + L F    T   G+ G GK+ +L+A+     GR     + A   R
Sbjct: 2   LTQLTVSNYAIAERVELQFSKGMTALTGETGAGKSIVLDALGLAMGGR-----ADAGAVR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLADISIK------LETRDDRSVR-CLQINDVVI--RV 112
            G+        F      E  E LA+  +       L     +  R    IN        
Sbjct: 57  HGAKRADITATFDVSGIPEATEWLAEHELDDDNDCILRRVISKDGRSRAYINGQPCPLNH 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRGRN 170
           + EL   L           +        R+ +D    V  +    R     + ++ R R 
Sbjct: 117 LKELGGVLMDIHSQHQHQSLLRK--ETHRKLVDEFAGVETLAAETREAWKSWNQI-RQR- 172

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
             LTE   ++           E   K+ + R + +  L  L +E  ++EN    +  L+
Sbjct: 173 --LTERQQNAD----------EAEAKLQLLRYQ-VEELDRLALEAGEQENLEQEQAQLS 218


>gi|307546311|ref|YP_003898790.1| chromosome segregation protein [Halomonas elongata DSM 2581]
 gi|307218335|emb|CBV43605.1| K03529 chromosome segregation protein [Halomonas elongata DSM 2581]
          Length = 1164

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 84/258 (32%), Gaps = 28/258 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++   + + FD   T  VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLTSIRLAGFKSFVDPISVPFDGNMTAIVGPNGCGKSNIIDAVRWVMGESSAKTLRGES 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIK------LETRDDRSVRC-----LQINDV 108
            ADV   GS        A +E M    D S+        E    R V          N  
Sbjct: 61  MADVIFNGSTGRKPVGQASIELMFDNRDGSMGGPYAQYAEISVKRQVTREGQSSYFFNGQ 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
             R  D +      + L P    I     + R                  +  ++   R 
Sbjct: 121 KCRRRD-IADLFLGTGLGPRSYAIIGQGMISRLIESRPEELRATLEEAAGISKYKERRRE 179

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
               +     +      I  ++            + ++ L        + +     +  L
Sbjct: 180 TENRMRRTQENLERLEDIREEL-----------DKQLDKLKRQADAARRYQTLKQEEYRL 228

Query: 229 TGFLDGKFDQSFCALKEE 246
            G L     ++  A ++E
Sbjct: 229 KGELALLRGRALKASQDE 246



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 65/178 (36%), Gaps = 25/178 (14%)

Query: 184  SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            S+ + ++ E+G +I       + A+     +  +++      + L+  L+   D++   +
Sbjct: 945  SAWQTRLEEVGERIRRLGAINLAAIEEYDQQAERRDYLEAQHVELSEALE-TLDRAIRRI 1003

Query: 244  KEEYAKKLFDGRKM----------DSMSRRTL-IGPHRSDLIVDY--------CDKAITI 284
             +E   +  D  +                 T  +     DL+             K  TI
Sbjct: 1004 DQETRTRFRDTFERVNTGLQTLFPKIFGGGTAWLTLTGDDLLETGVAIMARPPGKKNSTI 1063

Query: 285  AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
               S GE+ +  + +  A  +L       AP  +LDE+ A LD+       ++V ++ 
Sbjct: 1064 HLLSGGEKALTALAMVFAIFQL-----NPAPFCMLDEVDAPLDDANVGRYAKLVKEMS 1116


>gi|282853632|ref|ZP_06262969.1| DNA repair protein RecN [Propionibacterium acnes J139]
 gi|282583085|gb|EFB88465.1| DNA repair protein RecN [Propionibacterium acnes J139]
 gi|314983159|gb|EFT27251.1| DNA repair protein RecN [Propionibacterium acnes HL110PA3]
 gi|315092381|gb|EFT64357.1| DNA repair protein RecN [Propionibacterium acnes HL110PA4]
          Length = 559

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 111/369 (30%), Gaps = 40/369 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L   +  T   G+ G GKT ++  I  L   +     +
Sbjct: 1   MIRSVRIRGLGVID-----ETVLEPSSALTAVTGETGAGKTMVVTGIGLLLGDK-----A 50

Query: 61  YADVTRIGSPSFFS-------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              + R G                RV  + G  +    +  R   S R   +        
Sbjct: 51  DTGLVRHGCDRAVVEAVLDTPDAGRVSELGGTVEDGEVICARHITSRRSRALLGGAQVTA 110

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +L   +     +         +   R+     R     +     RH +   +F R    
Sbjct: 111 SQLAHIVGDQVTIHGQSEQVRLVDAARQLDVVDRAAGDELAGHLSRHAQLWSEF-RAASQ 169

Query: 169 RNRLLTEGYFDSSW-CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIK 225
           R + L E    +      +  ++ E+           ++I  ++ L      +E+     
Sbjct: 170 RLQRLNEDRAGAEMEREVLTRRVGEVDAVDPKPHEDDDLIAEIAGLQAAQSIRESLNKAD 229

Query: 226 LSLTGFLDGKFDQSFC-ALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           + L G       Q    AL E+   +L      D R  +   R   +    +DL      
Sbjct: 230 VLLNGVETSTGPQPGALALLEQAVHELDGTGDADPRAAELAERARQMSYDLTDLAASVAG 289

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FR 336
            A          Q++  +G  LA  + +          LL+  +A  D  +   L     
Sbjct: 290 HAARAEAD---PQRLEELGGRLAAIQRLLRARTTTLDDLLESTAA--DRHRLAELDPGAT 344

Query: 337 IVTDIGSQI 345
            +  +G Q+
Sbjct: 345 DLDSLGQQV 353


>gi|240850883|ref|YP_002972283.1| DNA repair protein RecN [Bartonella grahamii as4aup]
 gi|240268006|gb|ACS51594.1| DNA repair protein RecN [Bartonella grahamii as4aup]
          Length = 553

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 82/239 (34%), Gaps = 31/239 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I       +L + F A  T+  G+ G GK+ +L+A+S    GRG      A + R
Sbjct: 2   LVQLSIHNIVLIETLDIHFTAGLTVLTGETGAGKSILLDALSLALGGRG-----DASLVR 56

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+     T               R  G++   DI ++     D   R    + V    +
Sbjct: 57  HGAERGQVTAVFDVSVSHPARQLIRENGLDDEGDIILRRVQSSDGRSRVFINDQVSSVAL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRF-----LDRMVFAIDPRHRRRMIDFERLMRG 168
                 L +       DR    ++  R+       L+  V  +   +     +FE  +  
Sbjct: 117 MRSVGRLLVEIHGQHDDRALVDVATHRQLLDAFGGLEDEVENLRQCY-YTWREFEERL-Q 174

Query: 169 RNRLLTEGYFDS-SWCSSIEAQMAELGVKI-----NIARVEMINALSSLIMEYVQKENF 221
           R RL  E       +  +   ++ +L  K+        R   +  L  +  +  + ++ 
Sbjct: 175 RQRLKVESAVREVDYLRACVEELEKLDFKVGEEDTLSLRRADMLKLEKIATDIKEADDL 233


>gi|242278886|ref|YP_002991015.1| ATP-binding protein [Desulfovibrio salexigens DSM 2638]
 gi|242121780|gb|ACS79476.1| ATP-binding protein [Desulfovibrio salexigens DSM 2638]
          Length = 354

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +K L ++ F  ++   L F       +G NGVGK+++L+A   + 
Sbjct: 2  LKNLKLTNFTAFSEAELNFSKGINFIIGRNGVGKSHLLKAGYVIC 46


>gi|60115666|ref|YP_209457.1| putative RecF protein [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|161867991|ref|YP_001598172.1| hypothetical protein pOU7519_130 [Salmonella enterica subsp.
          enterica serovar Choleraesuis]
 gi|168239691|ref|ZP_02664749.1| RecF/RecN/SMC domain protein [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|194733781|ref|YP_002112895.1| RecF/RecN/SMC domain protein [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|313116763|ref|YP_004032913.1| RecF/RecN/SMC domain protein [Edwardsiella tarda]
 gi|45758224|gb|AAS76436.1| putative RecF protein [Salmonella enterica subsp. enterica
          serovar Choleraesuis str. SC-B67]
 gi|161087370|gb|ABX56840.1| RecF [Salmonella enterica subsp. enterica serovar Choleraesuis]
 gi|194709283|gb|ACF88506.1| RecF/RecN/SMC domain protein [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. CVM19633]
 gi|197287640|gb|EDY27032.1| RecF/RecN/SMC domain protein [Salmonella enterica subsp. enterica
          serovar Schwarzengrund str. SL480]
 gi|312192400|gb|ADQ43886.1| RecF/RecN/SMC domain protein [Edwardsiella tarda]
          Length = 362

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I  L+I  +R+   + L  + Q  I  G NG GK+NI +AI  +
Sbjct: 2  ITTLHIQNYRSIREMSLELE-QLNIVFGPNGTGKSNIYKAIHLM 44


>gi|291545814|emb|CBL18922.1| Predicted ATPase [Ruminococcus sp. SR1/5]
          Length = 385

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 64/393 (16%), Positives = 121/393 (30%), Gaps = 65/393 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-- 64
           I   +   FRN  +  L F+ +  I +G N  GK+N ++A++F S     R     ++  
Sbjct: 2   INKFSCHNFRNIQAEDLGFE-KINILIGPNNSGKSNFIKALTFFSEM--LRTGKEENLKS 58

Query: 65  -----TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR---VVDEL 116
                               +         I L  +  R      + D + +   V++EL
Sbjct: 59  AFLNTISRNGWDHIRNKQVSDSEAINFSWEINLNGQPVRYQFSFNVGDSIEKCNIVLEEL 118

Query: 117 NKHLRIS-------WLVPSMDRI--------FSGLSMERRRFLDR-----MVFAIDPRHR 156
           N   R S       +     D+I               RR   D      ++        
Sbjct: 119 NAAERTSDYTDEFNYFSCHDDKIGKGRFSTAIRKGQRNRRLAFDVDSKETIIMQFKDILL 178

Query: 157 RRMIDFERLMRGRN--RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIM 213
                +   +   N  +LL +        S   +  A+   +    R  + I  L   + 
Sbjct: 179 NNKSIYGSELVRVNIAQLLYDLQKYFDGFSVYTS--AQFNTR--KMREPVTIKNLDDFLN 234

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-DSMSRRTLIGPHRSD 272
                 NF ++    T       D  + +L E+  K+L    KM D+ +           
Sbjct: 235 --YDAGNFTNVFNRYTS-----EDMLWRSLFEDRMKELIPNLKMIDAATAY-------DK 280

Query: 273 LIVDYC---DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           LI        +   ++  S G  K +++ +      +         +L +DE   +L   
Sbjct: 281 LIFRMLYSSGEQYDLSDVSEGTLKGLILNML-----INMPMNRERALLAIDEPETNLHPA 335

Query: 330 KRNALFRIVTDIGS--QIFMTGTDKSVFDSLNE 360
            +  +   +   G+  Q F++       D   E
Sbjct: 336 WQKVVGNWIQTAGTFKQCFISTHSPDFLDVFTE 368


>gi|238809525|dbj|BAH69315.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 1001

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 3   NRIKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRR 58
             +K+  +    F+++A  + L FD      VG NG GK+NI +AI ++   R     R 
Sbjct: 9   GNMKLIKVEAHGFKSFADPIVLKFDGGVAGIVGPNGSGKSNINDAIKWVLGERSAKELRG 68

Query: 59  ASYADVTRIGSPSF-----FSTFARVEGMEG-----LADISIKLETRDDRSVRCLQINDV 108
            +  DV   GS +             +   G        ISI              +N  
Sbjct: 69  DNMDDVIFAGSKTAKPMDKAVVTLTFDNRNGISSIPHETISISRVLERGNGNNQYFLNGE 128

Query: 109 VIRVVD 114
             R  D
Sbjct: 129 PCRQKD 134


>gi|218197381|gb|EEC79808.1| hypothetical protein OsI_21247 [Oryza sativa Indica Group]
          Length = 1179

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  Y  L      +  + VG NG GK++++ AI+           R +S A 
Sbjct: 40  IVEIELCNFMTYDHLTCRPGPRLNLVVGPNGSGKSSLVCAIALALAADPAILGRASSVAA 99

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-IND--VVIRVVDELNKHL 120
             + G  S      ++       D  + +  + D + +    ++   V  + V +L K  
Sbjct: 100 FVKRGEDSG---HVKISLRGNTPDHKLCITRKVDTNNKSEWQLDGTTVPKKEVIDLIKKF 156

Query: 121 RISW-----LVPSM 129
            I        +P  
Sbjct: 157 NIQVNNLTQFLPQD 170


>gi|195037076|ref|XP_001989991.1| GH18490 [Drosophila grimshawi]
 gi|193894187|gb|EDV93053.1| GH18490 [Drosophila grimshawi]
          Length = 1240

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
          ++F+ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27 LQFIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64 VTR 66
          +  
Sbjct: 87 LIH 89


>gi|194764338|ref|XP_001964287.1| GF21472 [Drosophila ananassae]
 gi|190619212|gb|EDV34736.1| GF21472 [Drosophila ananassae]
          Length = 1190

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +   +D  + ++  +      + +  V+    D+   + +
Sbjct: 61  RQSLLHEGTGARVISAYVEIIFDNSDNRVPIDKEE------IFLRRVIGAKKDQYFLNKK 114

Query: 122 IS 123
           + 
Sbjct: 115 VV 116



 Score = 38.0 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + +  +           AP  L DEI   LD   R A+  ++ ++     F
Sbjct: 1089 SGGQKSLVALALIFS-----IQKCDPAPFYLFDEIDQALDAMHRKAVADMIHELSDTAQF 1143

Query: 347  MTGTDKSVFDSLNETAKFMRI 367
            +T T     + L    KF  +
Sbjct: 1144 ITTT--FRPELLENAHKFYGV 1162


>gi|189440686|ref|YP_001955767.1| DNA repair ATPase [Bifidobacterium longum DJO10A]
 gi|189429121|gb|ACD99269.1| ATPase for DNA repair [Bifidobacterium longum DJO10A]
 gi|291516381|emb|CBK69997.1| hypothetical protein BIL_03310 [Bifidobacterium longum subsp.
          longum F8]
          Length = 495

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 6  KIKFLNISEFRNYASLRLVFDA-----QHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++K L + + RN +   L FD        T   G NG GKT +++AI  L     
Sbjct: 3  RLKRLVLDDMRNISHGVLDFDDLPTGGSVTGIYGQNGSGKTTVIDAIGILRALLS 57


>gi|156085962|ref|XP_001610390.1| structural maintenance of chromosome 1-like protein [Babesia bovis
           T2Bo]
 gi|154797643|gb|EDO06822.1| structural maintenance of chromosome 1-like protein, putative
           [Babesia bovis]
          Length = 1328

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +  L +  F++Y  ++R+    + T  +G NG GK+NI++AISF+        R  +  D
Sbjct: 70  VTTLVLHNFKSYGGTVRVSDFKKFTAIIGPNGSGKSNIMDAISFVLCVNSTVLRGLNLRD 129

Query: 64  VTRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           +    S      ++ A VE +    +  +    + + S       D       +  +HLR
Sbjct: 130 LIHKPSKRSIDSTSDAYVELILNGGNRPVTFRRQINTSGTVTYFVDGESITFKQYKEHLR 189


>gi|27227807|emb|CAD59412.1| SMC5 protein [Oryza sativa]
          Length = 1056

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  Y  L      +  + VG NG GK++++ AI+           R +S A 
Sbjct: 24  IVEIELCNFMTYDHLTCRPGPRLNLVVGPNGSGKSSLVCAIALALAADPQILGRASSVAA 83

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-IND--VVIRVVDELNKHL 120
             + G  S      ++       D  + +  + D + +    ++   V  + V +L K  
Sbjct: 84  FVKRGEDSG---HVKISLRGNTPDHKLCITRKVDTNNKSEWQLDGTTVPKKEVIDLIKKF 140

Query: 121 RISW-----LVPSM 129
            I        +P  
Sbjct: 141 NIQVNNLTQFLPQD 154


>gi|71748400|ref|XP_823255.1| structural maintenance of chromosome 2 [Trypanosoma brucei
          TREU927]
 gi|70832923|gb|EAN78427.1| structural maintenance of chromosome 2, putative [Trypanosoma
          brucei]
          Length = 1175

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY- 61
          +++K + I  F++YA  ++            G NG GK+NI +AI F+      +R    
Sbjct: 1  MRVKSIVIDGFKSYAHRKVIDDLSPHFNAITGLNGSGKSNIFDAICFVMGITNLKRVRAE 60

Query: 62 --ADVT-RIGSPSFFSTFARVE 80
             ++  R G+    +    +E
Sbjct: 61 DPRELIFRAGTTGVHAARVTIE 82


>gi|328851224|gb|EGG00381.1| hypothetical protein MELLADRAFT_93316 [Melampsora larici-populina
           98AG31]
          Length = 1107

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 14/129 (10%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62
            I+ L + +F  +  L + F  Q    +G NG GK+ IL  I     G+     R  S  
Sbjct: 76  AIEQLEVFKFMCHDYLVINFGPQANFIIGRNGSGKSAILTGIILALGGKASTTSRATSLK 135

Query: 63  DVTRIGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
              + G                     V G   + + +I  E      ++  + N V+  
Sbjct: 136 GFIKHGQSRAEVKLQMSNRGEEAYRPDVYGETIIIERAITKEGGGGYKIKSGRDNKVIST 195

Query: 112 VVDELNKHL 120
              EL   L
Sbjct: 196 QRAELQNIL 204


>gi|261333168|emb|CBH16163.1| structural maintenance of chromosome 2, putative [Trypanosoma
          brucei gambiense DAL972]
          Length = 1175

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY- 61
          +++K + I  F++YA  ++            G NG GK+NI +AI F+      +R    
Sbjct: 1  MRVKSIVIDGFKSYAHRKVIDDLSPHFNAITGLNGSGKSNIFDAICFVMGITNLKRVRAE 60

Query: 62 --ADVT-RIGSPSFFSTFARVE 80
             ++  R G+    +    +E
Sbjct: 61 DPRELIFRAGTTGVHAARVTIE 82


>gi|213402735|ref|XP_002172140.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
 gi|212000187|gb|EEB05847.1| conserved hypothetical protein [Schizosaccharomyces japonicus
           yFS275]
          Length = 1331

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
           +R+ ++ L +  F++YA  ++   FD   +  VG NG GK+N+++A+ F+   R    R+
Sbjct: 131 SRLVVRELRLHNFKSYAGTQIIGPFDYSFSAIVGPNGSGKSNVIDALLFVFGFRASKLRQ 190

Query: 59  ASYADVTR 66
           +  + +  
Sbjct: 191 SKLSALIH 198


>gi|124268178|ref|YP_001022182.1| ATP-dependent OLD family endonuclease [Methylibium petroleiphilum
          PM1]
 gi|124260953|gb|ABM95947.1| ATP-dependent endonuclease of the OLD family-like protein
          [Methylibium petroleiphilum PM1]
          Length = 608

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +++K + I  FR Y     +  D   T FVG N +GK+++LEA+   
Sbjct: 1  MRLKSVAIKNFRCYREEATVQLDE-LTTFVGKNDIGKSSVLEALEIF 46


>gi|67483574|ref|XP_657007.1| SMC5 protein [Entamoeba histolytica HM-1:IMSS]
 gi|56474241|gb|EAL51621.1| SMC5 protein, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1027

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 5/114 (4%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RR 58
           +R  I  + +  F  Y S+ +       + +G NG GK++I+ AI+ L  G       R 
Sbjct: 13  HRGSIIRIKMERFLTYDSVEVFPGKGLNVIIGPNGAGKSSIVCAIA-LGLGTAPKVLGRS 71

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
               D  +IG            G+    ++ I+ +                   
Sbjct: 72  KDLKDFVKIGEEDAVIEVELFNGITRANNLVIRRQFNLSNQSNWFINGRTASHK 125


>gi|325093282|gb|EGC46592.1| chromosome segregation protein [Ajellomyces capsulatus H88]
          Length = 1219

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MYIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 91/281 (32%), Gaps = 22/281 (7%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM-DRIFSGL 136
            + +    L D++  +E    R  + +Q    + +   E + ++R   ++P      F   
Sbjct: 911  KADIKRELEDLARSMEKHQRRMEKSMQKKAALTKQAAECSANIRDLGVLPDDAFTKFKNT 970

Query: 137  SME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
                   R   ++  +      +++    +    + R  L        S   SIE     
Sbjct: 971  DSNTVVKRLHKVNEALKKYSHVNKQAFEQYNGFTKQRETLTKRREELDSSQKSIEEL--- 1027

Query: 193  LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
              + +   R +    L+   +     + F  +  +  G L  +        ++E      
Sbjct: 1028 --ITVLDHRKDAAIELTFKQVSREFAQIFEKLVPAGRGRLIIQRKTDRRN-QQEDELDSD 1084

Query: 253  DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
            +    +S+     +G   S       D    I   S G++ +  + +  A          
Sbjct: 1085 EEEARNSVENYVGVGISVS--FNSKHDDQQRIQQLSGGQKSLCALALVFA-----IQACD 1137

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
             AP  L DEI A+LD   R A+ +++     +   Q   T 
Sbjct: 1138 PAPFYLFDEIDANLDAQYRTAVAQMLKSIAEETNGQFICTT 1178


>gi|46110056|ref|XP_382086.1| hypothetical protein FG01910.1 [Gibberella zeae PH-1]
          Length = 1263

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y    + L  D+  T  +G NG GK+N ++AISF+   +    R A  
Sbjct: 3  KLIRLELFNFKSYKGHHVLLFGDSYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSAHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 KDLVYRG 69


>gi|324500969|gb|ADY40438.1| Structural maintenance of chromosomes protein 1A [Ascaris suum]
          Length = 1236

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          ++  L +  F++Y     +    Q T  +G NG GK+N+++AI F+   +    R     
Sbjct: 3  RLHTLELENFKSYKGKQIIGPFKQFTAIIGPNGSGKSNMMDAICFVLGEKASNLRVKRLN 62

Query: 63 DVTRIGSP 70
          D+   G+P
Sbjct: 63 DLI-HGAP 69


>gi|255524162|ref|ZP_05391122.1| DNA repair protein RecN [Clostridium carboxidivorans P7]
 gi|296186620|ref|ZP_06855022.1| DNA repair protein RecN [Clostridium carboxidivorans P7]
 gi|255512147|gb|EET88427.1| DNA repair protein RecN [Clostridium carboxidivorans P7]
 gi|296048657|gb|EFG88089.1| DNA repair protein RecN [Clostridium carboxidivorans P7]
          Length = 566

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  F    +L + FD    +  G+ G GK+ I++AI+++  G  F      D+ R
Sbjct: 2  LLQLNIKNFALIENLSISFDDGFNVLSGETGAGKSIIIDAINYV-LGSKF----NKDLIR 56

Query: 67 IGSPSFFS 74
           G    F 
Sbjct: 57 TGENKTFV 64


>gi|194909986|ref|XP_001982050.1| GG11251 [Drosophila erecta]
 gi|190656688|gb|EDV53920.1| GG11251 [Drosophila erecta]
          Length = 1238

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPISRSCYVTAKFVLNQ-ERHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|317402175|gb|EFV82766.1| DNA repair protein [Achromobacter xylosoxidans C54]
          Length = 553

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/193 (17%), Positives = 65/193 (33%), Gaps = 15/193 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRASYA 62
           ++ L+I +F       + F    T+F G+ G GK+ +++A++     RG     R  +  
Sbjct: 2   LRTLHIRDFVIVEQTEIHFGPGFTVFSGETGAGKSILIDALALALGERGDVSVLREGAAR 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVV--IRVVDELNKH 119
                   +  +  A +   E  AD  + L    D   R    IN     +  + EL   
Sbjct: 62  ADITAVFDTPPALRAWLAEREIDADDELALRRVIDAQGRSRAYINGTPATVAQLRELGDS 121

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRNRLLTEGY 177
           L       +   +       +R  LD       +     +    +  L R     L    
Sbjct: 122 LVDIHGQHAHQSLMR--PEAQRDLLDAHGGHGELRQGVAQAWKQWRALARQ----LELAE 175

Query: 178 FDSSWCSSIEAQM 190
            D++  ++   ++
Sbjct: 176 KDAAGLAAERERL 188


>gi|259047784|ref|ZP_05738185.1| prophage Lp2 protein 4 [Granulicatella adiacens ATCC 49175]
 gi|259035461|gb|EEW36716.1| prophage Lp2 protein 4 [Granulicatella adiacens ATCC 49175]
          Length = 612

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            L +  FRN+  + +    + TI  G NGVGK+NIL   S ++ G G   +  + +   
Sbjct: 6  TELILENFRNFRDVIIPLGKKITIVSGVNGVGKSNIL---SLIASGSG--ISKRSSLGSN 60

Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDD 97
            P F   F  ++  E   D  I L+    
Sbjct: 61 FQPEFL-DFFNIDQTEEYQDYKIYLKYGQS 89


>gi|281419994|ref|ZP_06250993.1| DNA repair protein RecN [Prevotella copri DSM 18205]
 gi|281405794|gb|EFB36474.1| DNA repair protein RecN [Prevotella copri DSM 18205]
          Length = 557

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 57/177 (32%), Gaps = 21/177 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F     L +      ++  G+ G GK+ IL AI  L    +  +  +     
Sbjct: 2   LKQLYIKNFTLIDELDIPLYPGFSVITGETGAGKSIILGAIGLLLGNRADSKAIKAGRDR 61

Query: 63  -------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVV 113
                  D+++ G   FF      +      D  I+ E       R   IND  +    +
Sbjct: 62  CVIEAHFDLSKYGMQDFFDA---NDIDYDAEDTIIRRELTAAGKSRAF-INDTPVPLSKM 117

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRG 168
            EL + L    +      +       +   +D +         +     ++++  + 
Sbjct: 118 RELGEQL--VDIHSQHQNLLLQKEDFQLSVVDIIAHDEKQKKAYLAEYKNYKKAKQQ 172


>gi|121716270|ref|XP_001275744.1| chromosome segregation protein SudA, putative [Aspergillus clavatus
           NRRL 1]
 gi|119403901|gb|EAW14318.1| chromosome segregation protein SudA, putative [Aspergillus clavatus
           NRRL 1]
          Length = 1199

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 77/260 (29%), Gaps = 27/260 (10%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + +K + I  F++Y    +   F  +H + VG NG GK+N   AI   LS          
Sbjct: 1   MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLGREE 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRSVRCLQINDVVIRVVD 114
                          A VE +   +D         + L            ++       D
Sbjct: 61  RQALLHEGSGSAVMSAYVEIIFDNSDDRFPTGKPEVVLRRTIGLKKDEYTLDRKNATKSD 120

Query: 115 ELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            +N      +   +   I               ER   L  +       +  R  +  ++
Sbjct: 121 VMNLLESAGFSRSNPYYIVPQGRVTALTNMKDTERLTLLKEVAGT--QVYEARRAESLKI 178

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           M   N    +   D      I  ++AEL  + +  R           +EY         +
Sbjct: 179 MHETNN--KKAKIDE-LLDFINERLAELEEEKDELRNFQEKDKERRCLEYTIHS---REQ 232

Query: 226 LSLTGFLDGKFDQSFCALKE 245
             ++  LD   +Q    +++
Sbjct: 233 QEISSILDNLEEQRQTGVED 252



 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 91/284 (32%), Gaps = 28/284 (9%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
            + E    L +++  +E    R  + +Q    + +   E   ++R   ++P         +
Sbjct: 891  KAEIRRELEELARSIEKHQRRMEKNMQKKAALTKRAAECAANIRDLGVLPDEAFTKYKHT 950

Query: 138  M-----ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
                  ++    +  +      +++    +    R R  L +      +   SIE  ++ 
Sbjct: 951  DSNTVVKKLHKANEALKKYSHVNKKAFEQYNSFTRQRETLTSRREELEASQKSIEDLISV 1010

Query: 193  LGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
            L  + + A       +S       +K        + +        + D+   +  E    
Sbjct: 1011 LDQRKDEAIERTFKQVSREFANIFEKLVPAGRGRLIIQRKTDRPLRRDEDMDSDDE---- 1066

Query: 250  KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
                 R   S+     +G   S       D+   I   S G++ +  + +  A       
Sbjct: 1067 -----RAQQSVENYVGVGISVS--FNSKHDEQQRIQQLSGGQKSLCALALVFA-----IQ 1114

Query: 310  TTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTG 349
                AP  L DEI A+LD   R A+ +++  I      Q   T 
Sbjct: 1115 ACDPAPFYLFDEIDANLDAQYRTAVAQMLQSISESTNGQFICTT 1158


>gi|34763716|ref|ZP_00144638.1| Chromosome partition protein smc [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27886517|gb|EAA23770.1| Chromosome partition protein smc [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 565

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 5/113 (4%)

Query: 1   MTNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           +  ++ +K + I+ F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++  
Sbjct: 7   LGEKMYLKAVEINGFKSFGDKVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNI 66

Query: 60  SYA---DVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                 DV   G      +T A V  +   AD  + L+    +  R + I+  
Sbjct: 67  RAKESQDVIFSGGKEKKPATKAEVSLIIDNADRYLDLDNDTVKITRRIHISGE 119


>gi|268608979|ref|ZP_06142706.1| SMC domain protein [Ruminococcus flavefaciens FD-1]
          Length = 430

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 54/395 (13%), Positives = 115/395 (29%), Gaps = 61/395 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +KI  L     +   +L L       T+  G N  GKT++L+AI +   G  +R +    
Sbjct: 3   VKINTLEFENVKRIKALALEPSPNGLTVIGGRNNQGKTSVLDAICWALGGEKYRPSQAQR 62

Query: 64  ------------------VTRIGSPSFFSTF---ARVEGMEGLADISIKL---------E 93
                             V R G  S            G + L      L          
Sbjct: 63  EGALLPPTLKVTLSNGIVVERKGKNSALKVTDPNGNKSGQQLLNSFLEPLALDLPQFMNS 122

Query: 94  TRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID- 152
           +  D++   L+I  V    +DEL +  +  +      R   G   +++    + + + + 
Sbjct: 123 SNKDKANTLLRIIGV-GDKLDELERTEKEMY----DKRHAIGQIADQKAKYAKEMVSYEG 177

Query: 153 ----PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
               P     +I  ++ +  RN    E        +  + ++ +    ++ A+     A 
Sbjct: 178 VPEIPISASDLIAQQQAILARNG---ENQRKRQLKAQYDYELEQARQALDEAKRRYAQAQ 234

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
           ++        E+      +         D     ++    K   +        +   +  
Sbjct: 235 ANAQTAAKSAEDLVDESTAELEKNIADIDTINTKVRANLDKMKAEEEAKGYREQYDALTV 294

Query: 269 HRSDLIVD----YCDKAITIAHGS--------TGEQK---VVLVGIFLAHARLISNTTGF 313
              D+  +      +  + +   S         G++         + +A A  I      
Sbjct: 295 QIEDVRKEKFDLLNNADLPLRGLSVADGELTFEGQKWDNMSGSQQLRVATA--IVRKLNP 352

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
               +L +    +D D      + +   G Q   T
Sbjct: 353 ECGFVLLDKLEQMDTDTLKEFGQWLESEGLQAIAT 387


>gi|225563326|gb|EEH11605.1| chromosome segregation protein sudA [Ajellomyces capsulatus
          G186AR]
          Length = 1219

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MYIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 91/281 (32%), Gaps = 22/281 (7%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM-DRIFSGL 136
            + +    L D++  +E    R  + +Q    + +   E + ++R   ++P      F   
Sbjct: 911  KADIKRELEDLARSMEKHQRRMEKSMQKKAALTKQAAECSANIRDLGVLPDDAFTKFKNT 970

Query: 137  SME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
                   R   ++  +      +++    +    + R  L        S   SIE     
Sbjct: 971  DSNTVVKRLHKVNEALKKYSHVNKQAFEQYNGFTKQRETLTKRREELDSSQKSIEEL--- 1027

Query: 193  LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
              + +   R +    L+   +     + F  +  +  G L  +        ++E      
Sbjct: 1028 --ITVLDHRKDAAIELTFKQVSREFAQIFEKLVPAGRGRLIIQRKTDRRN-QQEDELDSD 1084

Query: 253  DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
            +    +S+     +G   S       D    I   S G++ +  + +  A          
Sbjct: 1085 EEEARNSVENYVGVGISVS--FNSKHDDQQRIQQLSGGQKSLCALALVFA-----IQACD 1137

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
             AP  L DEI A+LD   R A+ +++     +   Q   T 
Sbjct: 1138 PAPFYLFDEIDANLDAQYRTAVAQMLKSIAEETNGQFICTT 1178


>gi|209525227|ref|ZP_03273770.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209494412|gb|EDZ94724.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 395

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF-- 56
           M+   KI++L +  +R   +L L      T+F+G NG GK+ I +  +FLS         
Sbjct: 1   MSTIPKIEYLKVINYRALQNLELKRITPLTVFLGPNGSGKSTIFDVFAFLSECFTESLSK 60

Query: 57  ---RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98
              RR  + ++    S        +         I+  L   ++ 
Sbjct: 61  AWDRRGRFRELRTRDSQGCIVIELKYRETSDSPLITYHLAINEEN 105


>gi|86358440|ref|YP_470332.1| DNA repair protein [Rhizobium etli CFN 42]
 gi|86282542|gb|ABC91605.1| DNA repair protein [Rhizobium etli CFN 42]
          Length = 557

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 103/299 (34%), Gaps = 43/299 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F+   ++  G+ G GK+ +L+++S    GRG        + R
Sbjct: 2   LIQLSIRDIVLIERLDLAFETGLSVLTGETGAGKSILLDSLSLALGGRG-----DGGLVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ------------INDVVIR-VV 113
            G      T     GM+  A + ++    DD      +            +ND  I   +
Sbjct: 57  HGEDRGQVTAVFAVGMDHGARLLLRENGIDDEGDLIFRRQQSADGRTKAYVNDQPISVQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRG 168
                 + +       DR     +   R  LD      D      R  R   D ER ++ 
Sbjct: 117 MRQAGQMLVEIHGQHDDRALV-DTNAHRNLLDAFAGLTDEVAEVSRLHRLWRDSERTLKK 175

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMI--NALSSLIMEYVQ--- 217
               +     ++ +  S  +++ +L        ++  +R  M+    ++  I E  +   
Sbjct: 176 HREKVESAAREADYLRSSVSELEKLSPQDGEEEELAESRQRMMKAERIAGDIAEASEFLN 235

Query: 218 --KENFPHI-----KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR-KMDSMSRRTLIGP 268
                 PHI     +L           +   AL +    +L + + ++++  R+T   P
Sbjct: 236 GNASPVPHIASLVRRLERKSHEAPGLLEETVALLDAALDQLSNAQMEVEAALRKTEYDP 294


>gi|296119490|ref|ZP_06838048.1| putative ATPase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967373|gb|EFG80640.1| putative ATPase [Corynebacterium ammoniagenes DSM 20306]
          Length = 889

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I  + +  FR    L +    D   T+  G N  GKT IL+AI  L
Sbjct: 1  MRIHSIELKNFRGIKHLNVEEIPDTGVTVIHGRNEAGKTTILQAIDTL 48


>gi|237739986|ref|ZP_04570467.1| chromosome partition protein smc [Fusobacterium sp. 2_1_31]
 gi|229422003|gb|EEO37050.1| chromosome partition protein smc [Fusobacterium sp. 2_1_31]
          Length = 1183

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           + +K + I+ F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++      
Sbjct: 1   MYLKAVEINGFKSFGERVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60

Query: 63  --DVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G      +T A V  +   +D  +  +    +  R + I   
Sbjct: 61  SQDVIFSGGKEKKAATKAEVSLIIDNSDRYLDFDNDIVKITRRIHITGE 109


>gi|222033743|emb|CAP76484.1| hypothetical protein LF82_317 [Escherichia coli LF82]
 gi|312946597|gb|ADR27424.1| ATP-dependent OLD family endonuclease [Escherichia coli O83:H1
          str. NRG 857C]
 gi|324008909|gb|EGB78128.1| hypothetical protein HMPREF9532_01331 [Escherichia coli MS 57-2]
          Length = 690

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPG 53
          + I  + I  FR  A   LV + Q T+ VG N  GKT++ E I  FL+ G
Sbjct: 1  MHIHQVEIKNFRLLADAELVLEEQTTVIVGRNNSGKTSLSEIIRRFLADG 50


>gi|225180935|ref|ZP_03734383.1| chromosome segregation protein SMC [Dethiobacter alkaliphilus AHT
           1]
 gi|225168416|gb|EEG77219.1| chromosome segregation protein SMC [Dethiobacter alkaliphilus AHT
           1]
          Length = 1193

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 28/228 (12%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L +  F+++    +       T+ VG NG GK+NI +A+ ++   +     R   
Sbjct: 1   MFVKRLEMHGFKSFGDKTIFDLTPGITVVVGPNGCGKSNITDAVRWVLGEQSARHLRGTR 60

Query: 61  YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
             D+   G +     +FA V      +D ++ L+ ++    R L         +N    R
Sbjct: 61  MDDIIFGGTANRKPLSFAEVSITLDHSDGALGLDYQEVTVTRRLYRTGESEYLLNKRPCR 120

Query: 112 VVDELNKHLRISW------LVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D L   +           +    +D I +    ERR+  +     +   ++ R  + +
Sbjct: 121 LKDILELFMDTGIGKEAYSFIGQGRVDEILNARPEERRQIFEEAAGILK--YKTRKREAQ 178

Query: 164 RLMRG-RNRLLTEG---YFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           R +      LL  G   +  S     +  Q A+   K    R ++ N 
Sbjct: 179 RRLAETAENLLRVGDIIHELSGQLEPLSEQ-ADTAQKYLQLRDKLKNR 225



 Score = 36.4 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 64/198 (32%), Gaps = 43/198 (21%)

Query: 173  LTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINALSSLIMEYVQKENFPH 223
            L +     +    ++ Q+ ELG               RVE + A    + E   +++   
Sbjct: 966  LDDKKAAQAEIRHLKEQITELGNVNLGAIDEHNRVAERVEFLTAQQEDLRE--GEKDLLR 1023

Query: 224  IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            I   +   +  KF  SF  + E+++    +           L G  R+ L +   D  + 
Sbjct: 1024 IIKEIDSRMGEKFAHSFAIINEQFSVVFKE-----------LFGGGRAHLRLTDPDHPLE 1072

Query: 284  I----------------AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
                             +  S GE+ +  + +  A  +         P  +LDEI A LD
Sbjct: 1073 AGVEIVAQPPGKKLQHMSLLSGGEKTLTAIALLFAFLKF-----RPTPFCILDEIEAALD 1127

Query: 328  EDKRNALFRIVTDIGSQI 345
            E   N     +     Q 
Sbjct: 1128 EANLNRFTDFLRTYSEQT 1145


>gi|160934287|ref|ZP_02081674.1| hypothetical protein CLOLEP_03158 [Clostridium leptum DSM 753]
 gi|156866960|gb|EDO60332.1| hypothetical protein CLOLEP_03158 [Clostridium leptum DSM 753]
          Length = 561

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 88/248 (35%), Gaps = 26/248 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I        + + F  Q  +  G+ G GK+ +++AI+ +    G R +    + R
Sbjct: 2   LSQLYIENIAVIERVTIDFSNQLNVLTGETGAGKSILIDAINAIL---GQRTSRD--LIR 56

Query: 67  IGSPSFFS--TFARVEGMEGLA----------DISIKLETRDDRSVR-CLQINDVV--IR 111
            G+ S      F  + G               D ++ L+   + S +   ++N     + 
Sbjct: 57  TGASSAVVSALFTEISGETEKTLESLGFNADEDRTLLLQREINSSGKGSCRVNGRPATVS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL-SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           V+ E+   L           + +    ++    +  +   ++  +R+     ++L +  +
Sbjct: 117 VLKEIGNTLITIHGQNENYELLNADIPIQYLDDIGGLSSQLE-EYRQAYYGLKQLKKEMD 175

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIAR---VEMINALSSLIMEYVQKENFPHIKLS 227
            L  +    +     +  Q+ EL    ++ R    E++N  +           F   K +
Sbjct: 176 ALSLDESQKARQIDLLTYQLQELEAA-DLQRGELEELVNKRTLFQNSEKIALAFQEAKEA 234

Query: 228 LTGFLDGK 235
           ++G  +  
Sbjct: 235 VSGNEESS 242


>gi|115444055|ref|NP_001045807.1| Os02g0133700 [Oryza sativa Japonica Group]
 gi|113535338|dbj|BAF07721.1| Os02g0133700 [Oryza sativa Japonica Group]
          Length = 343

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 5  IKIKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRA 59
          + IK + +  F++Y    +    F  +  + VG NG GK+N   AI F+     +  R  
Sbjct: 1  MYIKKVVVEGFKSYRE-EISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSE 59

Query: 60 SYADVTRIGSP-SFFSTFARVEGMEGLADISIKLE 93
              +   G+  S  S F  +        I +K E
Sbjct: 60 DRGALLHEGADISVLSAFVEIVFDNSDNRIPLKKE 94


>gi|57913907|ref|XP_554796.1| AGAP011425-PA [Anopheles gambiae str. PEST]
 gi|27227574|emb|CAD59404.1| SMC2 protein [Anopheles gambiae]
 gi|55237055|gb|EAL39499.1| AGAP011425-PA [Anopheles gambiae str. PEST]
          Length = 1187

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 18/124 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + I  F++Y     +  FD +     G NG GK+NIL++I F   +S     R  
Sbjct: 1   MYIKSIVIDGFKSYGRRTEVQGFDPEFNAITGLNGTGKSNILDSICFVLGISNLVHVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+  + G          +            G E   +ISI  +       + L IN 
Sbjct: 61  SLQDLVYKSGQAGITKATVTLIFDNSNPNQCPIGYETCREISITRQIVVGGKNKYL-ING 119

Query: 108 VVIR 111
             ++
Sbjct: 120 KSVQ 123


>gi|253747245|gb|EET02057.1| SMC3-like protein [Giardia intestinalis ATCC 50581]
          Length = 1230

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 50/133 (37%), Gaps = 8/133 (6%)

Query: 5   IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAI--SFLSPGRGFRRASY 61
           + +  + I  FR+     +        +FVG NG GK+N   AI  + + P    +  + 
Sbjct: 1   MYLSEVEIKNFRSIVYASVTGLHPGINVFVGINGAGKSNFYGAILFALMDPLYDLKTINR 60

Query: 62  ADVTRIGS---PSFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           A V    +     +      +EG+  G     + +      +     +NDV++   D++ 
Sbjct: 61  AQVLSNDATNKSGYVKLILDLEGVTVGDFQGKVSVSRHFTITTDTFYLNDVLV-TSDKVA 119

Query: 118 KHLRISWLVPSMD 130
             L I    PS  
Sbjct: 120 NFLSIMGFNPSSQ 132



 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 72/216 (33%), Gaps = 40/216 (18%)

Query: 161  DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
             ++R ++ +++L  +         ++E  +A+L  K      E   A++    E  ++  
Sbjct: 1020 QYDRAVKEKDQLEKQLADVVEGEHAVEELVAKLDDKRKAHFEEQFKAVNMRFSEIFRRIT 1079

Query: 221  FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
                 L+L+   DG+ D                                   +   + ++
Sbjct: 1080 GNEAHLTLSVHGDGEPDGIL--------------------------------IDATFANQ 1107

Query: 281  AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-- 338
            A      S G++ +  +   LA     +        LLLDE  A LDE  R     ++  
Sbjct: 1108 ATKDVQMSGGQRTLTSLCFVLA-----AEQVSGNSFLLLDEPDACLDEAYRTVFASLLVE 1162

Query: 339  -TDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
                G Q+F+      +  + N+     R+  H  +
Sbjct: 1163 RATQGIQMFIVTFRTEIITAANQCFAVGRVEEHTMI 1198


>gi|163741560|ref|ZP_02148951.1| DNA repair protein RecN [Phaeobacter gallaeciensis 2.10]
 gi|161385294|gb|EDQ09672.1| DNA repair protein RecN [Phaeobacter gallaeciensis 2.10]
          Length = 548

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 86/285 (30%), Gaps = 38/285 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRALDIRDILIIDHLELNFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGS------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--V 112
            G+            P   +     E      D  +          +   +ND      V
Sbjct: 57  QGAKQGEVLAEFDLTPEHPAHAVLAEAGLPGGDTLLLRRVNTAEGRKTAWVNDRRCSGEV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------RMVFAIDPRHRRRMIDFERLM 166
           +  L+  L           + +      R  LD       M+ ++  R         + +
Sbjct: 117 LRALSDTLLELHGQHDDRGLLN--PRGHRAMLDEFAGLGDMLASVRDRWATA-SRARKAV 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL------GVKINIARVEM--INALSSLIMEY--V 216
                 L     +  +     A++  L         ++  R EM     +   I     +
Sbjct: 174 EETRSALKAIRAEEDFLRHAVAELDALDPQPGEDAALDQRRREMQSAERIRGDIQRAQGI 233

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             +           +L+G  DQ+  AL    A  L    ++    
Sbjct: 234 LADGAEAALGDAQRWLEGVSDQAENALDAPIAALLRAMIELGEAQ 278


>gi|119384180|ref|YP_915236.1| hypothetical protein Pden_1439 [Paracoccus denitrificans PD1222]
 gi|119373947|gb|ABL69540.1| conserved hypothetical protein [Paracoccus denitrificans PD1222]
          Length = 744

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K++ + +  FR     RL    + T+ VG N  GKT+ ++A+
Sbjct: 1  MKLRRIEVFNFRKLRRARLDMSDKQTLLVGANNSGKTSAMKAL 43


>gi|323448058|gb|EGB03962.1| hypothetical protein AURANDRAFT_72635 [Aureococcus
          anophagefferens]
          Length = 1259

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 1  MTNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          M   + IK ++IS FR++        FD  H   +G NG GK+N  +A+ F
Sbjct: 1  MAAALSIKTISISGFRSFRQQDAIESFDPGHNALIGRNGSGKSNFFDAVQF 51



 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 12/86 (13%)

Query: 282  ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT-- 339
            +++   S G++ +V + +  A           AP  L DEI A LD + R A+  +V   
Sbjct: 1144 VSMNQLSGGQKALVALALVFA-----IQRCDPAPFYLFDEIDAALDANHRAAVAALVKRQ 1198

Query: 340  ----DIGSQIFMTGTDKSVFDSLNET 361
                D  +Q F+T T +  F ++ + 
Sbjct: 1199 AAAEDAPAQ-FITTTFRPEFVNIADA 1223


>gi|310790618|gb|EFQ26151.1| RecF/RecN/SMC N terminal domain-containing protein [Glomerella
          graminicola M1.001]
          Length = 1253

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y    ++   D+  T  +G NG GK+N ++AISF+   +    R A  
Sbjct: 3  KLIRLELFNFKSYKGHHILLFGDSYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSAHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 KDLVYRG 69


>gi|308070910|ref|YP_003872515.1| ATP-dependent endonuclease of the OLD family [Paenibacillus
          polymyxa E681]
 gi|305860189|gb|ADM71977.1| Predicted ATP-dependent endonuclease of the OLD family
          [Paenibacillus polymyxa E681]
          Length = 669

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 5  IK---IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K   I  + I  FRN+    +    +  + +G+N +GKTN++ AI  +
Sbjct: 1  MKSPFISRIKIKNFRNFKEFDVCLSHK-QVIIGENNIGKTNLIRAIQLI 48


>gi|218697189|ref|YP_002404856.1| hypothetical protein EC55989_3921 [Escherichia coli 55989]
 gi|218353921|emb|CAV00353.1| conserved hypothetical protein [Escherichia coli 55989]
          Length = 628

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 4  RIKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
           ++++ L +  FR Y +   ++ D   T  VG N  GK+ +LEA++  
Sbjct: 20 HMRLRKLKLKNFRGYRNSTEIIIDESMTGIVGRNDFGKSTLLEALAIF 67


>gi|164686808|ref|ZP_02210836.1| hypothetical protein CLOBAR_00404 [Clostridium bartlettii DSM
          16795]
 gi|164604198|gb|EDQ97663.1| hypothetical protein CLOBAR_00404 [Clostridium bartlettii DSM
          16795]
          Length = 581

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +K L+I+ FRN+ S+ +  D +  +  G N VGKTN L A+ FL
Sbjct: 1  MILKKLDINNFRNFNSISIELDNK-NVVFGMNDVGKTNFLYALRFL 45


>gi|159902606|ref|YP_001549950.1| SMC ATPase superfamily chromosome segregation protein
          [Prochlorococcus marinus str. MIT 9211]
 gi|159887782|gb|ABX07996.1| putative chromosome segregation protein, SMC ATPase superfamily
          [Prochlorococcus marinus str. MIT 9211]
          Length = 1207

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  + ++ F+++  S+ +  +   T+  G NG GK+NIL+ I F   L+  RG R   
Sbjct: 10 VYINQVELTNFKSFGGSMTIPLEEGFTVVTGPNGSGKSNILDGILFCLGLATSRGMRADR 69

Query: 61 YADVTRIG 68
            D+   G
Sbjct: 70 LPDLVNSG 77


>gi|330874185|gb|EGH08334.1| hypothetical protein Pgy4_05722 [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 489

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/393 (15%), Positives = 116/393 (29%), Gaps = 57/393 (14%)

Query: 5   IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEA-ISFLSPGRGFRR--- 58
           ++I+ +++S FR +    + +   A+ T  VG N  GKT +L A +      R  R    
Sbjct: 1   MRIESVSLSGFRCFGPNPITVDVSAEITTIVGPNAAGKTALLHAMLKLFGVTRAQRTILR 60

Query: 59  -----ASYADVTRIGSPSFF--STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
                    D     S   F   + A  E   G A            S + + I+     
Sbjct: 61  SDFHLGPDDDPENRDSKYLFIEVSIAFPELKNGTATAET-----IAPSFKHMLIDRAEKP 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            +  +   L   W     D    G   +   ++D +    +   R  +   +R +     
Sbjct: 116 PICRMR--LEAQW---DDDGTVEGEVSQELFWVDTLDEQPENDKRHPVAVADRGLIQ--- 167

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            L          +   A    L  ++  A +E  +     + E  +         S    
Sbjct: 168 -LYYTPASRDAAAQTRATTGALAARLLRA-IEWSSDTEDAVQETTESLTAAFEDESAIAA 225

Query: 232 LDGKFDQSFCALKEEYAK-----KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           +       +  L +E         L   R  D +++  ++    +D       +   I  
Sbjct: 226 ITKALQTRWSDLHDEVVDTNPRLSLVSRRFEDVVNKIAVVFEQGAD------GRERGIEA 279

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAP--------------ILLLDEISAHLDEDKRN 332
            S G+Q +    +  A   L       +               I  L+E   HL      
Sbjct: 280 LSDGQQSLFYFALAAAVFDLEREVVAGSVEGFRDNALRIPALSIFALEEPENHLSPYFLA 339

Query: 333 ALFRIVTDI----GSQIFMTGTDKSVFDSLNET 361
            + R V  +     +Q  +T    +V   +N  
Sbjct: 340 RIIRQVRSLTDQSRAQAIITSHSPAVLSRVNPR 372


>gi|326316597|ref|YP_004234269.1| hypothetical protein Acav_1784 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373433|gb|ADX45702.1| hypothetical protein Acav_1784 [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 409

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 81/276 (29%), Gaps = 50/276 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K+  +      +   + +      T+ VG N  GKTN +  + FL            D 
Sbjct: 1   MKLTRVEARHCFSLEDVGVALSPGVTVLVGPNATGKTNFVRTLEFL-----------RDA 49

Query: 65  TRIGSPSFFST---FARVEGMEGLADIS--IKLETRDDRSVRC---------LQIN---D 107
            R G     +      R+    G ADI   +++     +S R          L+I+   D
Sbjct: 50  VRDGLDHAVAARGGIGRLRQHSGEADIPGLVEIGIHATQSFRKNANRHAHYVLKIDSAAD 109

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
              RV  E   +           +      +    F       I                
Sbjct: 110 GNYRVASEDATYHHEELFPQDDSQQVWDWEVYELGFTRDGAGQI---------------- 153

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                L +    ++  +  + Q   LG  +   R+  ++ L   +  ++ +  F  +  +
Sbjct: 154 -----LRKNISPNTPITIEDQQRLALGALLEETRMFGLDELGKPLERHILRWRFSSLYPN 208

Query: 228 LTGFLDG-KFDQSFCALKEEYAKKLFDGRKMDSMSR 262
           +   +     D S       +   +   ++ +   +
Sbjct: 209 ILRQVTTLHADTSLREDGSNWVSVIRSAQRTEEGRQ 244


>gi|195504948|ref|XP_002099298.1| GE23444 [Drosophila yakuba]
 gi|194185399|gb|EDW99010.1| GE23444 [Drosophila yakuba]
          Length = 1238

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++++ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 27  LEYIEMENFKSYRGHIVVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 86

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    D  +  +          +IN   +     LNK 
Sbjct: 87  LIHGSSIGKPISRSCYVTAKFVLNQ-DSHMDFQRAVIGGSSEYRINGESVSSSTYLNKL 144


>gi|163743804|ref|ZP_02151177.1| SMC protein [Phaeobacter gallaeciensis 2.10]
 gi|161382953|gb|EDQ07349.1| SMC protein [Phaeobacter gallaeciensis 2.10]
          Length = 1151

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 101/281 (35%), Gaps = 30/281 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+ ++      +  R   
Sbjct: 1   MRFSKLRLNGFKSFVDPTDLLIADGLTGVVGPNGCGKSNLLEALRWVMGENRPKAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+ S     F     +++  E LA         +++  R  R V    + N  
Sbjct: 61  MEDVIFAGTSSRPARNFAEVSLQIDNSERLAPSGFNESDNLEILRRITRDVGSAYKTNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAQSPALVRQGQIAELINAKPKARRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK-INIARVEMINALSSLIMEYVQKE 219
             E  ++ +N        D      + AQ+++L  +  +  R   I          +   
Sbjct: 177 RHEAELKLKNTEQNLLRVDDV-IEQLAAQLSQLARQARHAQRYRDIGEQLRRAEGMLLYR 235

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
            +     +     D    +   A K E   ++ DG+++++ 
Sbjct: 236 RWREADDTRLEAEDILRTRETQAAKAEALARVADGKRLEAE 276


>gi|149012253|ref|ZP_01833322.1| DNA repair protein RecN [Streptococcus pneumoniae SP19-BS75]
 gi|147763579|gb|EDK70514.1| DNA repair protein RecN [Streptococcus pneumoniae SP19-BS75]
          Length = 555

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 76/208 (36%), Gaps = 25/208 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IG-------------SPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G             +          +G+E   +I I+ E  ++ RS+  +    V + V
Sbjct: 57  HGVPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL         + +              F D   + +   ++     + ++ + 
Sbjct: 117 LRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVK 196
              +        +    +E QMAE+   
Sbjct: 175 VLEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|317027943|ref|XP_001400318.2| subunit of the multiprotein cohesin complex [Aspergillus niger CBS
           513.88]
          Length = 1238

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 13/108 (12%)

Query: 6   KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           K+  L +  F++Y    + L  DA  T  +G NG GK+N ++AISF+   +    R  + 
Sbjct: 3   KLIRLELFNFKSYKGHHVLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTNL 62

Query: 62  ADVTRIG--------SPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101
            D+   G          S  +  A   G +   D  I  E   D S +
Sbjct: 63  RDLVYRGRVLRTSKVDASGNAIEAEANGDDQAED-GIDGEQSQDPSGK 109


>gi|289548265|ref|YP_003473253.1| ATP-dependent endonuclease of the OLD family-like protein
          [Thermocrinis albus DSM 14484]
 gi|289181882|gb|ADC89126.1| ATP-dependent endonuclease of the OLD family-like protein
          [Thermocrinis albus DSM 14484]
          Length = 561

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          +KI+ +  S FRN   + +      T  VG+N +GK+N L+ +  +   R F
Sbjct: 1  MKIERVKCSNFRNLDGVEIRLHEDITFIVGENNIGKSNFLDLLDIIFNKRRF 52


>gi|257081237|ref|ZP_05575598.1| DNA repair protein RecN [Enterococcus faecalis E1Sol]
 gi|256989267|gb|EEU76569.1| DNA repair protein RecN [Enterococcus faecalis E1Sol]
          Length = 560

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 104/292 (35%), Gaps = 38/292 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N++ ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +
Sbjct: 2   NKM-LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SS 55

Query: 63  DVTRIGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQIND 107
           D  R G+        FS     E  + L ++ I+ E          +   ++V  +    
Sbjct: 56  DYIRQGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRI 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDF 162
           V I  +  + ++L           +      ER       F  + + A+  ++ +   ++
Sbjct: 116 VNITNLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEY 172

Query: 163 ERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             L   +R R +   E             ++A     +     +++   + L       +
Sbjct: 173 RALEAKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIAD 231

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
                  +L G  D   D+   ++ E     L     +DS  +        +
Sbjct: 232 ALTISYAALNGEDDSSLDKIGTSMNE-----LASIESLDSEYKTLSDTVQNA 278


>gi|223935776|ref|ZP_03627691.1| chromosome segregation protein SMC [bacterium Ellin514]
 gi|223895377|gb|EEF61823.1| chromosome segregation protein SMC [bacterium Ellin514]
          Length = 1249

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 12/105 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++A+   L F    T  VG NG GK+N+ +AI ++      +  R   
Sbjct: 1   MYLKNLTVFGFKSFANKTSLNFQPGVTAIVGPNGCGKSNVSDAIRWVLGEQSAKALRGGE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
            ADV   G+              G+A++S+ +   DD  ++   +
Sbjct: 61  MADVIFNGTDG--------RKPLGMAEVSLTIGGVDDEHLKAAGV 97


>gi|254464770|ref|ZP_05078181.1| hypothetical protein RBY4I_1372 [Rhodobacterales bacterium Y4I]
 gi|206685678|gb|EDZ46160.1| hypothetical protein RBY4I_1372 [Rhodobacterales bacterium Y4I]
          Length = 744

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K++ + +  FR     RL    + T+ VG N  GKT+ ++A+
Sbjct: 1  MKLRRIEVFNFRKLRRARLDMSDKQTLLVGANNSGKTSAMKAL 43


>gi|195445194|ref|XP_002070216.1| GK11152 [Drosophila willistoni]
 gi|194166301|gb|EDW81202.1| GK11152 [Drosophila willistoni]
          Length = 1237

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           ++F+ +  F++Y   + +    Q    +G NG GK+N ++AISF+        R     D
Sbjct: 26  LQFIEMENFKSYRGHIIVGPLKQFNAVIGPNGSGKSNFMDAISFVMGEKTSSLRVKRLND 85

Query: 64  VTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +     IG P   S +   + +    +  +  +          +IN   +     LNK 
Sbjct: 86  LIHGSSIGKPVSRSCYVTAKFILN-HEKHMDFQRAVISGSSEYRINGESVSSSTYLNKL 143


>gi|134057256|emb|CAK96419.1| unnamed protein product [Aspergillus niger]
          Length = 1252

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/227 (18%), Positives = 79/227 (34%), Gaps = 30/227 (13%)

Query: 6   KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           K+  L +  F++Y    + L  DA  T  +G NG GK+N ++AISF+   +    R  + 
Sbjct: 3   KLIRLELFNFKSYKGHHVLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTNL 62

Query: 62  ADVTRIG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            D+   G            +    + +    G E     SI   T    S   +    V 
Sbjct: 63  RDLVYRGRSQDPSGKNDPRTAWVMAVYEDDAGEEQQWRRSI---TSGGVSEYRINNRIVT 119

Query: 110 IRVVDE-------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMI 160
            +  +E       L K          ++ I S    +  R ++++  +++    + R   
Sbjct: 120 AQQYNEALEAENILIKARNFLVFQGDVEAIASQSPKDLTRLIEQISGSLEYKAEYERLKA 179

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQ--MAELGVKINIARVEMI 205
           + E     +   L      +S     + Q   AE   +    R + I
Sbjct: 180 EAEEAAEQQTVQLNRRRGINSEIKQYQEQKREAENYARKAEERDQAI 226


>gi|33863137|ref|NP_894697.1| RecF protein:ABC transporter [Prochlorococcus marinus str. MIT
          9313]
 gi|33635054|emb|CAE21040.1| RecF protein:ABC transporter [Prochlorococcus marinus str. MIT
          9313]
          Length = 918

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +++   ++   R +  L L F    T+  G N  GK++++EA+ 
Sbjct: 1  MRLLHCHLENIRRHRFLDLDFSPGLTLISGANESGKSSLVEAMH 44



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 73/213 (34%), Gaps = 20/213 (9%)

Query: 154 RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
            H + +      +R R     EG       +++E             R ++   + +   
Sbjct: 714 EHLQLLSGQRGALRER----CEGLGSLEPYAALEEARVNFNQAKLEEREQL---MLAHAQ 766

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIGPHRS 271
           + + K +F   +  L+        Q+ C+  E       D   +  D       +G  R 
Sbjct: 767 QRLLK-SFQQAQAELSNRYTTPLSQAICSYLEPLLGNENDRCHLSFDPHDGFRELGLRRD 825

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
                   + +     S G ++ +   + L+ A  +    G    +L D+   + D D+ 
Sbjct: 826 -------GQNVQFRDLSGGMKEQLNGALRLSIADALKGGHGDCLPILFDDAFTNTDPDRI 878

Query: 332 NALFRIVTDI---GSQIFMTGTDKSVFDSLNET 361
             + R++T     G Q+ +   D + ++++ + 
Sbjct: 879 ETVLRMMTQAVKRGLQVIVLSCDPTPYETIADK 911


>gi|308270182|emb|CBX26794.1| hypothetical protein N47_A08230 [uncultured Desulfobacterium sp.]
          Length = 345

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 44/137 (32%), Gaps = 16/137 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + I  F  +  L + F     +F+G N  GK+++L+ +  L        A+   +  
Sbjct: 2   INSITIKNFTAFKELSVKFTEGINVFIGANSTGKSHLLKLMYALC-------AANKPL-- 52

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 F      +    +      +   + +  R  + +   I   D            
Sbjct: 53  --EKELFG-----DPKRYITSKLKGVFKPEGKIGRLCRNDKKAIIRADLKPNRFIEFAFS 105

Query: 127 PSMDRIFSGLSMERRRF 143
             MD +    +ME  R+
Sbjct: 106 NDMDEVVVTDNMEYERY 122


>gi|255072357|ref|XP_002499853.1| condensin complex component [Micromonas sp. RCC299]
 gi|226515115|gb|ACO61111.1| condensin complex component [Micromonas sp. RCC299]
          Length = 1271

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 96/288 (33%), Gaps = 38/288 (13%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           I  +    F++Y     +    Q T  +G NG GK+N+++AISF+   +    R     D
Sbjct: 23  ISRIECDNFKSYKGHQVIGPFKQFTSIIGPNGSGKSNLMDAISFVLGVQSAQLRGTVLRD 82

Query: 64  VT----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV---------V 109
           +             + + ++   E      I      D S     +I+            
Sbjct: 83  LVYAFDLADREESRTAYVKL-FYEAEDGTEICFSRHIDASGAGQYKIDGKTCTAEAYSER 141

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
           ++    L K          ++ + S    E    ++++  +          D++  ++ R
Sbjct: 142 LKEHGILIKARNFLVFQGDIESVASKSPKELCALVEQVSGS-----ADLKKDYDDALKLR 196

Query: 170 N-------RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
                     L      ++    ++ Q  E   K    + E+    +  +M  +   +  
Sbjct: 197 KECEEEQLASLQRRKATTTLRKQMKEQ-KEEAEKHIRMQEELTKLKTEHVMFKLYHIDHE 255

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
             + +       + +++  ALKE +  +L   +K +   R+   G  +
Sbjct: 256 AERHT------EEIEEAKEALKE-HEDRLNALKKEEEEKRQLKAGHSK 296


>gi|54020293|ref|YP_116186.1| p115 protein [Mycoplasma hyopneumoniae 232]
 gi|53987466|gb|AAV27667.1| p115 protein [Mycoplasma hyopneumoniae 232]
          Length = 979

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+  + I  F+++  S+ + FD      +G NG GK+NI +AI ++   +     R  +
Sbjct: 1   MKLIKIEIEGFKSFAESVSIKFDGSIVGIIGPNGSGKSNINDAIKWVLGEKSVKQLRGQN 60

Query: 61  YADVTRIGS-------PSFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRV 112
             DV   GS        +        E  E  A I +I    +  +       ND ++R 
Sbjct: 61  MDDVIFAGSKTVMPVNKAMVKLTFLDETREDSAQIFTISRVIKRGQGTNEYFYNDQLVRY 120

Query: 113 VD 114
            D
Sbjct: 121 KD 122


>gi|42527129|ref|NP_972227.1| hypothetical protein TDE1621 [Treponema denticola ATCC 35405]
 gi|41817553|gb|AAS12138.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
          Length = 596

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 27/135 (20%)

Query: 5   IKIKFLNISEFR---------NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
           + +  + +  FR         N   L + F     + VG+N  GKT I++A+  +   + 
Sbjct: 1   MYLSEIKLWNFRKYGRNDFDINVPHLVVPFHQGMNVLVGENDSGKTAIIDAVKLVLKTQS 60

Query: 56  ---FRRASYA---------------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97
               R                    D+T   + +F       +     A I +++     
Sbjct: 61  YEWLRVTDDDFYNESDRLRIELLFEDLTDDEAKNFIEWLCYKKQGNQPAVIYLRVVFEAR 120

Query: 98  RSVRCLQINDVVIRV 112
           R+ +  +I    IR 
Sbjct: 121 RNPKTKKITTTDIRA 135


>gi|326793876|ref|YP_004311696.1| DNA repair protein RecN [Marinomonas mediterranea MMB-1]
 gi|326544640|gb|ADZ89860.1| DNA repair protein RecN [Marinomonas mediterranea MMB-1]
          Length = 556

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 72/242 (29%), Gaps = 37/242 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + IS F    SL L      T+  G+ G GK+ +++A+S    GR     + A V R
Sbjct: 2   LTSIAISNFAIVESLELELKKGMTVISGETGAGKSIMVDALSLCLGGR-----TDAGVVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            G      + +            +E  +   +    L     +  R     +     + +
Sbjct: 57  HGEKKADISASFDISLYPEVLNWLEEHDLDQEQDCILRRVITKEGRSKAYINSRPCTLSD 116

Query: 116 LNKHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRH-----RRRMIDFERLMR 167
           L +       +        +    +   R  LD      +  +            +  + 
Sbjct: 117 LKEVSAYLVDIHGQHEHQSLLKKSAQ--RTQLDAYGQLTELAYTVRTEFNAWRTLKDELC 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS------LIMEYVQKENF 221
            +  +  E        S    ++A+L +     R + I  L         I E  Q+  F
Sbjct: 175 QKMNVSAEQEAKIQLLSYQLEELAQLDL-----RHKEIEELEQEQAFLSNIAEAQQQAYF 229

Query: 222 PH 223
             
Sbjct: 230 AS 231


>gi|315187134|gb|EFU20891.1| SMC domain protein [Spirochaeta thermophila DSM 6578]
          Length = 423

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/402 (13%), Positives = 118/402 (29%), Gaps = 71/402 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----------SPGRGF 56
           I  + +  ++    + +       I +G N  GK+++L+   FL          +  R  
Sbjct: 2   ITRVEVRHYKCLKRVDVRLHP-FNILIGPNASGKSSLLDVFQFLQESLEDDVDKAVTR-- 58

Query: 57  RRASYADVT--RIGSPSFFSTFARVEGMEGLA-------DISIKLETRDDRSVRCLQIN- 106
           R +S+ D+   +  S   F      E  + L           + +   ++R V     N 
Sbjct: 59  RTSSFEDLVWKQGESKEGFEIGLEAEVPQELHRNGYTKLRYEVAVGLSEEREVVVHSENL 118

Query: 107 -----DVVIRVVDELNKHLRISWLVPS-----MDRIFSGL--SMERRRFLDRMVFAIDPR 154
                    R   + N        +P         I          R  + +  +  +  
Sbjct: 119 WLLSKGTGRRSSFQKNTEKEAELFIPEIFELQDTHILHNGHTPEGYRLVIRKKHWNSNNY 178

Query: 155 HRRRMIDFERL--MRGRNRLLTEGYFDSSW--CSSIEAQMAELGVKINIARVEMINALSS 210
            +     +     +  +   L+    D      +     M   G++I          L+S
Sbjct: 179 FKSESTKWNIAFRLSPKRLSLSGIPEDKERFPIALWFRDMLREGIQIL--------RLNS 230

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY----------AKKLFDGRKMDSM 260
           L M      + P    S    L    ++     +E Y           + L      +  
Sbjct: 231 LSMRRSSPIDAPLSFQSDGSNLPVMVEKLQKEYRERYEWWVDHVKTTLQDLEGIEVRERP 290

Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
             R+     +           I     S G  +++ + +       ++       I+L++
Sbjct: 291 EDRSRYIVAK-----YSNGSVIPAWMLSDGTLRMLALTL-------LAYLPPKERIVLVE 338

Query: 321 EISAHLDEDKRNALFRIVTD-IGSQIFMTGTDKSVFDSLNET 361
           E    +     +++++ ++     QI +  T   +F +L E 
Sbjct: 339 EPENGMHPKAIHSVYQALSSVYKGQILV-ATHSPLFMALAEP 379


>gi|302673327|ref|XP_003026350.1| hypothetical protein SCHCODRAFT_79843 [Schizophyllum commune H4-8]
 gi|300100032|gb|EFI91447.1| hypothetical protein SCHCODRAFT_79843 [Schizophyllum commune H4-8]
          Length = 1334

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 82/215 (38%), Gaps = 21/215 (9%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
           R+ I  L +  F++YA  ++   F    +  VG NG GK+N ++A+ F+   R    R+A
Sbjct: 81  RLVIHKLTLVNFKSYAGKQVIGPFHKSFSAIVGPNGSGKSNTIDALLFVFGYRATKMRQA 140

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLA---DISIKLETRDDRSVRCLQINDVVIRVVDEL 116
             +++    +         VE             K E      +R  +      +     
Sbjct: 141 KLSELIHNSARHPDLEECSVEVHFQDIIDEPGDEKFEVVPGSDLRVAR--HANRQNASRY 198

Query: 117 NKHLRISWLVPSMDRIFSGL--SMERRRFLDR-----MVFAIDPR----HRRRMIDFERL 165
             + R+S     + ++  G    ++ +RFL        +  + P+    H   ++++   
Sbjct: 199 TINERLSNYT-EVQKLLKGRGIDLDHKRFLILQGEVESIAQMKPKATNEHEEGLLEYLED 257

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
           + G ++ + +     +    +  + AE+  K+  A
Sbjct: 258 IIGTSQYVEQIEKAQAEMEQLTEEKAEMMTKLRRA 292


>gi|254514183|ref|ZP_05126244.1| chromosome segregation protein SMC [gamma proteobacterium NOR5-3]
 gi|219676426|gb|EED32791.1| chromosome segregation protein SMC [gamma proteobacterium NOR5-3]
          Length = 1166

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 100/290 (34%), Gaps = 52/290 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F    +  VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTAVHFPTNMSAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIK------LETRDDRSVRC-----LQINDV 108
            ADV   GS +      A +E +   +D  +        E    R V         +N  
Sbjct: 61  MADVIFNGSGNRQPVGQASIELVFDNSDGGVGGEYASYAEIGIRRQVTRDGQSEYFLNGT 120

Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRFL 144
             R  D                  E     R+    P   RIF   +       ERRR  
Sbjct: 121 KCRRRDITDIFLGTGLGPRSYAIIEQGMISRLIESKPEELRIFIEEAAGISKYKERRR-- 178

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204
                  + R RR + + ERL   R+ L  +         +   +   L  +    R ++
Sbjct: 179 -----ETESRMRRTLENLERLTDLRDELERQLQHLQRQSQA-AEKYKNLKAEERALRQQL 232

Query: 205 ----INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
               +  L +       +     ++L        + D S    +  ++++
Sbjct: 233 MAAQLRELRTKHAAAAHEVGEHEVRLEAEYAHQQRVDTSLEQHRLTHSER 282



 Score = 36.8 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 26/198 (13%)

Query: 172  LLTEGYFDSSWCSSIEAQMAELGVKINI----------------ARVEMINALSSLIMEY 215
             L E   ++   ++ EA++   G +I                   R   ++A +  +   
Sbjct: 935  SLLEALPETVDMTAWEAELERCGNRIARLGPINLAAVEEYQQQSERKRYLDAQNEDLESA 994

Query: 216  VQKENFPHIKL--SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
            +        K+           FDQ    L+E + +    G     M+   L+    S L
Sbjct: 995  LDTLEAAIRKIDKETRNRFKDTFDQVNAGLQELFPRVFGGGAASLEMTGDDLLDTGVSIL 1054

Query: 274  IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED---K 330
                  K  TI   S GE+ +  + +  +  +L       AP  +LDE+ A LD+    +
Sbjct: 1055 AQPPGKKNSTIHLLSGGEKALTAIALVFSIFQL-----NPAPFCMLDEVDAPLDDANVGR 1109

Query: 331  RNALFRIVTDIGSQIFMT 348
               + + +++    +F+T
Sbjct: 1110 YARMVKEMSEKVQFVFIT 1127


>gi|119190941|ref|XP_001246077.1| hypothetical protein CIMG_05518 [Coccidioides immitis RS]
          Length = 1413

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 16/117 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 206 PRMVITHLVLTNFKSYAGRQVVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 262

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQIN 106
                   +    +      F  VE               I   ++   S R  + N
Sbjct: 263 MRQGKISALIHNSANFPNLPFCEVEVHFQEVLDLPGGGHEIVENSQLVVSRRAFKNN 319


>gi|325103652|ref|YP_004273306.1| chromosome segregation protein SMC [Pedobacter saltans DSM 12145]
 gi|324972500|gb|ADY51484.1| chromosome segregation protein SMC [Pedobacter saltans DSM 12145]
          Length = 1179

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          +++  L I  F+++   + + F+   T  VG NG GK+N+++AI   L     R  R   
Sbjct: 1  MQLNKLEIKGFKSFGDKITINFNEGVTAIVGPNGCGKSNVVDAIRWVLGEQSTRTLRSEK 60

Query: 61 YADVTRIGSPS 71
            ++   G+ +
Sbjct: 61 MENIIFNGTKA 71


>gi|58337600|ref|YP_194185.1| DNA repair protein [Lactobacillus acidophilus NCFM]
 gi|227904240|ref|ZP_04022045.1| DNA repair protein [Lactobacillus acidophilus ATCC 4796]
 gi|58254917|gb|AAV43154.1| DNA repair protein [Lactobacillus acidophilus NCFM]
 gi|227867888|gb|EEJ75309.1| DNA repair protein [Lactobacillus acidophilus ATCC 4796]
          Length = 560

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 89/260 (34%), Gaps = 57/260 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG       ++ R
Sbjct: 2   LVELDIQNFAIIKSLKVRFQERMTVIIGETGAGKSIIIDAVSLLMGGRG-----QKEMVR 56

Query: 67  IGSPSFFST-----------FARVEGMEGLADISIKLETRDD---RSVRCLQINDV--VI 110
            G      T            AR+    GL     +L    +   +    ++IN     I
Sbjct: 57  SGEKKAVITGLFELDNQKEEIARLCDQYGLPHDDDQLVISRELAVKGRNIVRINGQLTTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG-R 169
            V+ EL  +L                       +D               D + LM   R
Sbjct: 117 NVLRELGNYL-----------------------VDIHGQH----------DQQVLMNQDR 143

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
              L + Y  + +   +E   A+            +  L     E  QK++    + +  
Sbjct: 144 QIDLVDNYAPAKFKEDLEEYQADFDKW--QKLTNQLRHLRQDAQELAQKQDILQFQNNEL 201

Query: 230 GFLDGKFDQSFCALKEEYAK 249
              D +  Q    L+EEY +
Sbjct: 202 EAADLEDPQEDEKLEEEYNE 221


>gi|117921399|ref|YP_870591.1| hypothetical protein Shewana3_2959 [Shewanella sp. ANA-3]
 gi|117613731|gb|ABK49185.1| hypothetical protein Shewana3_2959 [Shewanella sp. ANA-3]
          Length = 533

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 5  IKIKFLNISE-FRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          +K+  L+I   F+N  ++++ FD     T+ VG NG GK+N+LEA+
Sbjct: 1  MKVDKLHIRSRFKNLENVKVDFDEDHLMTVVVGRNGSGKSNVLEAL 46


>gi|298713733|emb|CBJ48924.1| smc-like protein [Ectocarpus siliculosus]
          Length = 1167

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 87/330 (26%), Gaps = 67/330 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           +  +++S F  +  L +          G NG GK+ IL A+      +     R    AD
Sbjct: 86  VLKVHVSNFMCHRKLSVPLCKHVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMAD 145

Query: 64  VTRIGSPSFFSTFARVEGMEG-------LADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
             R G          +   E           I+I+   +         +           
Sbjct: 146 FIRHGWKGDAVLEVTLLNTEHGFMFEEYGESITIRRTIKQPSGGGFALLGHDRKVKSTNK 205

Query: 117 NKHLRISWLVP-------------SMDRIFSGLSMERRRFL----------------DRM 147
            + LR+   +              +  +   G   ++  F                    
Sbjct: 206 AELLRMLEFLNIQVDNPVAVLDQENSKKFILGTEKDKYEFFLKATDLGRISDYIEEAGEY 265

Query: 148 VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQM------AELG------V 195
           +  +          + R  + R   L   Y        +E  M       E         
Sbjct: 266 ITKMKNGSDAASHQYRRS-KDRISALKHEYKAFQELEKLERTMWAIQEHIEWAVVSAAEE 324

Query: 196 KINIARV-------------EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           K+   R+             E I   +  I +   ++   + +L+       +  Q    
Sbjct: 325 KVKKLRLDTTAKTLLRDKLNEKIAEFNKEIADTEARKLEVNARLNAGVAETARLKQVLIK 384

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
            KEE+ K   +    D  ++RT +   R D
Sbjct: 385 AKEEFRKA--ESPLRDLRTQRTSLETERKD 412


>gi|298246443|ref|ZP_06970249.1| SMC domain protein [Ktedonobacter racemifer DSM 44963]
 gi|297553924|gb|EFH87789.1| SMC domain protein [Ktedonobacter racemifer DSM 44963]
          Length = 1293

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGR---GFRRASYA 62
           +K L +  FR    + + F  + +I + G N  GK+ +LE+I F   G      R+   A
Sbjct: 4   LKHLTVERFRLLREVNIHFPQRGSILIQGPNESGKSALLESIYFALYGEPIASDRKKKRA 63

Query: 63  --DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             D+   GSP    + +   G   ++   I LE    + VR L +N   +   DE+   
Sbjct: 64  LDDLISYGSPRATVSLSFSIGTTDVSMTRI-LERGQGQQVRLL-VNQSGVTQGDEITDL 120



 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 66/198 (33%), Gaps = 19/198 (9%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
             + D++     R  L  +    +     +E Q  EL  K+   R+ +   L     +  Q
Sbjct: 1015 LLADYKA--EERPELEEKRDTFAQELQDLERQELELSEKLQTGRLSL--DLDETRQQAEQ 1070

Query: 218  KENFPHIKLSLTGFLDGKFDQSFCAL-------KEEYAKKLFDGR------KMDSMSRRT 264
            +E    IK      ++  + +    +        ++    L  GR        D      
Sbjct: 1071 QERSYQIKYHGQRMINELYQRVLQKVVPRTQHYMQQILPLLTSGRYHDVHLTTDDEEGTI 1130

Query: 265  LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH--ARLISNTTGFAPILLLDEI 322
              GP R ++      + I  +  S G    + + + LA   A L  +       + LDE 
Sbjct: 1131 SGGPVRVNVWEAAAGEYIPRSALSGGTADQLSLALRLAFSIAALPQDELAVPGFVFLDEP 1190

Query: 323  SAHLDEDKRNALFRIVTD 340
             +  D  +  AL  ++T 
Sbjct: 1191 LSSFDHTRAQALVDVITS 1208


>gi|146342489|ref|YP_001207537.1| DNA repair protein RecN [Bradyrhizobium sp. ORS278]
 gi|146195295|emb|CAL79320.1| DNA repair protein RecN (Recombination protein N) [Bradyrhizobium
           sp. ORS278]
          Length = 557

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 69/230 (30%), Gaps = 35/230 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  R+ I+ + +        L L F     +  G+ G GK+ +L+A +    GRG     
Sbjct: 1   MLARLSIRDIVL-----IERLDLEFSEGLAVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEG-----------LADISIKLETRDDRSVR-CLQINDV 108
            A + R G+     T     G +             AD  + L        R    IND 
Sbjct: 51  DASLVRHGADQGQVTAVFEIGKDHPAARILAANGLDADGEMILRRVQYGDGRTRAFINDQ 110

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM------VFAIDPRHRRRMIDF 162
            + V         +  +    D      +   RR LD        V  ++     R    
Sbjct: 111 SVSVQTLKAIGATLVEIHGQHDERALVDAATHRRLLDAFAGLEKDVAGVETLWAARRSAV 170

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMIN 206
              +      +     ++ +      ++ +L        ++   R  M+ 
Sbjct: 171 S-ALDQHRAGMERAAREADYLRHASDELKKLAPKEGEETQLATRRTAMMQ 219


>gi|15237219|ref|NP_197096.1| structural maintenance of chromosomes (SMC) family protein (MSS2)
           [Arabidopsis thaliana]
 gi|9755638|emb|CAC01791.1| putative protein [Arabidopsis thaliana]
 gi|332004841|gb|AED92224.1| structural maintenance of chromosomes 5 [Arabidopsis thaliana]
          Length = 1053

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 74/221 (33%), Gaps = 30/221 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  +  L     ++  + +G NG GK++++ AI+    G      R  S   
Sbjct: 23  IIEIELHNFMTFNHLVCKPGSRLNLVIGPNGSGKSSLVCAIALCLGGEPQLLGRATSVGA 82

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-INDVVIRVVD--ELNKHL 120
             + G  S    + ++       + ++ +  + D   +     N   +   D  E+ +  
Sbjct: 83  YVKRGEDSG---YVKISLRGNTREENLTIFRKIDTRNKSEWMFNGSTVSKKDIVEIIQKF 139

Query: 121 RISWLVPSMDRIFSGLSMER-RRFLDRMVFAI------------DPRHRRRMIDFERLMR 167
            I       + +   L  +R   F       +             P H R +++  R ++
Sbjct: 140 NIQV-----NNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPVHHRALVEKSRDLK 194

Query: 168 GRNRLLTEGYFDSSWCSSI-EAQMAELGVKINIARVEMINA 207
              R + +     +   ++ + Q  E  V+    R   +  
Sbjct: 195 QLERAVAKNGETLNQLKALVDEQ--EKDVERVRQRELFLTK 233


>gi|332670188|ref|YP_004453196.1| DNA repair protein RecN [Cellulomonas fimi ATCC 484]
 gi|332339226|gb|AEE45809.1| DNA repair protein RecN [Cellulomonas fimi ATCC 484]
          Length = 578

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 61/367 (16%), Positives = 106/367 (28%), Gaps = 67/367 (18%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I+I  L +          +      T+  G+ G GKT +L A+S L  G+     +
Sbjct: 1   MIEEIRIDNLGV-----ITRAHVELGPGLTVLTGETGAGKTMVLTALSLLLGGK-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEG----------------------LADISIKLETRDDR 98
                R G+ S  +   RV   EG                      +  +    +    R
Sbjct: 51  DPATVRRGAASA-AVEGRVVLPEGAPVLARALEAGADLDDDGSLVLVRTVGAGTDGAAGR 109

Query: 99  SVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
           S   +    V   V+ EL + L          R+       +R  LD  V A    HR  
Sbjct: 110 SRAYVGGRSVPQAVLGELAEALVTVHGQADQARL--RSPAHQRDALDAFVGA---EHRET 164

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  +      R R+  E          ++  +A         R      L   + E  + 
Sbjct: 165 LARYRAAWAERGRVAAE----------LDDLVAR-----TQERAREAELLRLGLAEVERV 209

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
           +  P   ++L          +  A +  +A+ L         +           L     
Sbjct: 210 DPQPGEDVAL----------AEEADRLAHAEDLRAAAAGAHGALAGDADTAGDGLAATDV 259

Query: 279 DKAITIAHGSTGEQKVVL--VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
                      GE    L  +   +A A  +           L+++ A  D  +  A+ +
Sbjct: 260 VDRARRLLEQAGEHDAALAGLATRVAEAGYLLADVSAELSSYLEDLQA--DPLRLEAVQQ 317

Query: 337 IVTDIGS 343
               +GS
Sbjct: 318 RRAQLGS 324


>gi|313906486|ref|ZP_07839820.1| AAA ATPase [Eubacterium cellulosolvens 6]
 gi|313468676|gb|EFR64044.1| AAA ATPase [Eubacterium cellulosolvens 6]
          Length = 365

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          ++ L I  FR   +L++       + VGDN  GKT++LEAI  L      
Sbjct: 4  LEKLQIDRFRGIKALKIHELKNVNLVVGDNNCGKTSVLEAIQLLRTSGSL 53


>gi|301609962|ref|XP_002934524.1| PREDICTED: structural maintenance of chromosomes protein 6-like
           [Xenopus (Silurana) tropicalis]
          Length = 1125

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 13/109 (11%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           I+ +++  F  ++ L    F       VG+NG GK+ IL A+     G+           
Sbjct: 87  IESISLRNFMCHSMLGPFRFGPNVNFVVGNNGSGKSAILTALIVGLGGKAAFTNR----- 141

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVV 113
                   +    ++G E  A+ISI L  R   + +  +  N + +R  
Sbjct: 142 ------GSTIKGFIKGGENFAEISITLRNRGQDAYKPDVFGNSITVRQR 184


>gi|301382273|ref|ZP_07230691.1| hypothetical protein PsyrptM_06553 [Pseudomonas syringae pv.
          tomato Max13]
          Length = 763

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI--SFLSPGRGFR 57
          + I+ L I+ FR   S+R+   A+ T+ VG N  GK++ + A+    +S    FR
Sbjct: 1  MHIQHLEIANFRKLLSVRIDLAAETTLLVGANNSGKSSAMLALRRFLVSKASAFR 55


>gi|219850668|ref|YP_002465101.1| hypothetical protein Cagg_3830 [Chloroflexus aggregans DSM 9485]
 gi|219544927|gb|ACL26665.1| conserved hypothetical protein [Chloroflexus aggregans DSM 9485]
          Length = 534

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          I+ + I  FR      L    +  +F+G N  GKT ILE +   + 
Sbjct: 2  IERIVIHRFRGIRQGDLNHLRKFNLFIGPNNSGKTAILELLYLSAT 47


>gi|294793135|ref|ZP_06758281.1| hypothetical protein HMPREF0874_01602 [Veillonella sp. 6_1_27]
 gi|294456080|gb|EFG24444.1| hypothetical protein HMPREF0874_01602 [Veillonella sp. 6_1_27]
          Length = 961

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 94/219 (42%), Gaps = 30/219 (13%)

Query: 162 FERLMRGRN--RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
           + R +R  N    L E        +SIE ++A L       R +++ A+ +L  +  Q +
Sbjct: 735 YRR-LREANKDNWLDELAHSEREIASIEDKLATL----YERRGQIVEAMRTLGSDQEQHQ 789

Query: 220 NFPHIKLSLTGFLDGKFD----------------QSFCALKEEYAKKLFDGR-KMDSMSR 262
                + +L   L+   +                QS+   K+ +  +L     +  +  R
Sbjct: 790 ML-QEREALQSELESALEDWATQVLISHCMDKAQQSYEQEKQPHMLELASSYVERLTGER 848

Query: 263 RTL--IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
            TL  +G ++   +++   + + +   S+G    V + + LA A++ S     +  ++LD
Sbjct: 849 YTLDILGINKGVALINNNGERLELKFWSSGLADQVYLALRLALAKVFSYQV-ESLPIILD 907

Query: 321 EISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
           +I    DE+++ +   ++ ++G   QI++    +SV+D 
Sbjct: 908 DILVRFDENRQRSALELLAELGKNQQIWLFTCQRSVYDM 946



 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR----A 59
          + IK +   EF  Y        D    +  G N  GKT++LE +  L  G   +      
Sbjct: 2  MNIKRIRFDEFGPYRDWSFTTGDNGVQLMYGPNESGKTSLLEGMRTLLFGGTHKAYGPMT 61

Query: 60 SYADVTRIGSPSFFSTFAR 78
             DV R G   +     +
Sbjct: 62 GALDVDRNGESYYIGRKGK 80


>gi|256078657|ref|XP_002575611.1| structural maintenance of chromosomes smc3 [Schistosoma mansoni]
 gi|238660853|emb|CAZ31844.1| structural maintenance of chromosomes smc3, putative [Schistosoma
           mansoni]
          Length = 291

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 36/113 (31%), Gaps = 14/113 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIF-----------VGDNGVGKTNILEAI-SFL 50
           + IK + I  FR+Y        F   H I            VG NG GK+N  +AI   L
Sbjct: 1   MYIKKVIIQGFRSYRDQTCPEEFSPHHNIIGMICLPSIIPTVGRNGSGKSNFFQAIQFVL 60

Query: 51  SPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
           S                         A VE +   +D  I  +  +    R +
Sbjct: 61  SDEYSHLSNQERQNLLHEGTGPRVISAYVEMIFDNSDNRIPFDKNEVSLRRII 113


>gi|145478375|ref|XP_001425210.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124392279|emb|CAK57812.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1127

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GF-RRASY 61
          + IK ++I    +Y ++ L       IFVG NG GK+N + A+ F    +   F R+   
Sbjct: 1  MSIKKISIRNLLSYKAIDLELGGNLNIFVGKNGSGKSNFVNALLFALTDKFGSFDRKMIE 60

Query: 62 ADVT 65
           ++ 
Sbjct: 61 NNLI 64


>gi|255084475|ref|XP_002508812.1| condensin complex component [Micromonas sp. RCC299]
 gi|226524089|gb|ACO70070.1| condensin complex component [Micromonas sp. RCC299]
          Length = 1240

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 13/114 (11%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + IK + +  F+ Y       F+      VG NG GK+N+  AI F+           AD
Sbjct: 1   MHIKQVIVEGFKTYREQTAADFEPHLNCIVGANGSGKSNLFHAIRFV----------LAD 50

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           +   GS         +    G A +S   E   D S   L ++   +R+   + 
Sbjct: 51  I--FGSTRAEERQKLLHEGAGHAVMSAYAEIVFDNSDNRLPVDREEVRLRRTIG 102


>gi|212546681|ref|XP_002153494.1| cohesin complex subunit  (Psm1), putative [Penicillium marneffei
          ATCC 18224]
 gi|210065014|gb|EEA19109.1| cohesin complex subunit (Psm1), putative [Penicillium marneffei
          ATCC 18224]
          Length = 1265

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y    + L  DA  T  +G NG GK+N ++AISF+   +    R  + 
Sbjct: 3  KLVRLELFNFKSYKGHHVLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTNL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 KDLVYRG 69


>gi|198449465|ref|XP_002136902.1| GA26880 [Drosophila pseudoobscura pseudoobscura]
 gi|198130619|gb|EDY67460.1| GA26880 [Drosophila pseudoobscura pseudoobscura]
          Length = 1038

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 8/132 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           +IK + +  F +Y  +         +  G NG GK+ I+ AI     G      R AS  
Sbjct: 15  RIKSVYVKHFVSYKEVTYYPSKYLNVLTGPNGSGKSTIVAAIMIGLGGEPQLLDRSASLI 74

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D  + G              E   +   ++ + D  S   ++      +    +     +
Sbjct: 75  DYIQSGETEATIAVTIYGRSEHTTEAFRRIISSDGTSSFYVKNIKQTKKNFQNIVASYNL 134

Query: 123 SW-----LVPSM 129
                   +P  
Sbjct: 135 QVGNLCQFMPQD 146


>gi|38637832|ref|NP_942806.1| hypothetical protein PHG168 [Ralstonia eutropha H16]
 gi|32527170|gb|AAP85920.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 656

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
          + I+ + I+ FR +      + F    T  VG N  GKT +L+A+       R  R    
Sbjct: 1  MHIESVTIAGFRCFGPNPTAIPFSQGLTAIVGPNASGKTAVLQALMRLFGVTRAQRTIVP 60

Query: 62 AD 63
          +D
Sbjct: 61 SD 62


>gi|73540737|ref|YP_295257.1| DNA repair protein RecN [Ralstonia eutropha JMP134]
 gi|72118150|gb|AAZ60413.1| DNA repair protein RecN [Ralstonia eutropha JMP134]
          Length = 576

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 88/265 (33%), Gaps = 51/265 (19%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +L L F +  T+F G+ G GK+ +++A++ +   R     + A V R
Sbjct: 2   LRSLSIRDFVIVDTLDLDFQSGFTVFTGETGAGKSILIDALALVLGER-----ADAGVVR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLADIS---------IKLETRDDRSVR-CLQINDVVI- 110
            GS        FST A ++      ++          + L    D S R    IN     
Sbjct: 57  EGSARASISATFSTHAALDAWLEERELGGDEDGDVRTVLLRRTVDGSGRSKAFINGAAAT 116

Query: 111 ---------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
                    ++VD   +H     L P   R+               +             
Sbjct: 117 LAQLREVGDQLVDIHGQHAHQQLLRPDAQRLLFDA--------HAGLTQQAGAVAESWRA 168

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           +   +R R  +  +          +E Q+ EL              L+    E+ ++   
Sbjct: 169 WRACVRQREAVEHQSREMQLERERLEWQVGEL------------EKLAPQAGEW-EEIQA 215

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEE 246
            + +LS    L      +  AL E 
Sbjct: 216 EYNRLSHAAGLIDGSRAALDALSEA 240


>gi|95929904|ref|ZP_01312645.1| Chromosome segregation protein SMC [Desulfuromonas acetoxidans
          DSM 684]
 gi|95134200|gb|EAT15858.1| Chromosome segregation protein SMC [Desulfuromonas acetoxidans
          DSM 684]
          Length = 1170

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +KIK + I  F+++     L F+   T  +G NG GK+N+++AI +       +  R  +
Sbjct: 1  MKIKRIEIIGFKSFVDRTVLNFEPGVTAILGPNGCGKSNVIDAIRWAMGEQNAKNLRGQA 60

Query: 61 YADVT 65
            DV 
Sbjct: 61 MEDVI 65


>gi|319901727|ref|YP_004161455.1| DNA replication and repair protein RecN [Bacteroides helcogenes P
           36-108]
 gi|319416758|gb|ADV43869.1| DNA replication and repair protein RecN [Bacteroides helcogenes P
           36-108]
          Length = 556

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 62/205 (30%), Gaps = 20/205 (9%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGF 56
           M+  + ++ L I  +     L + F +  ++  G+ G GK+ IL AI  L    +  +  
Sbjct: 1   MSISM-LRSLYIQNYALIEKLDIKFGSGFSVITGETGAGKSIILGAIGLLLGQRADVKSI 59

Query: 57  RRASYADVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
           R  +   +   R   S      F     +E   +  ++ E       R   IND      
Sbjct: 60  RTGASKCIIEARFDISAYGMQPFFEENELEYDDECILRREVYASGKSRAF-INDTPASLA 118

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERL 165
            + EL + L           +       +   LD ++   +          +        
Sbjct: 119 QMKELGELLIDV--HSQHQNLLLNKEGFQLNVLD-ILSHNEDNLASYRTIYQEWRQASHD 175

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQM 190
           +        +   D  +      Q+
Sbjct: 176 LEHLIACAKQDKADEDYIRFQLEQL 200


>gi|237801538|ref|ZP_04589999.1| hypothetical protein POR16_22131 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024398|gb|EGI04454.1| hypothetical protein POR16_22131 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 896

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 25/200 (12%)

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINAL------------SSLIMEYVQKENFP 222
               D +   ++  ++AEL      AR  + N L            ++ +       N  
Sbjct: 524 RTSVDPAVRLALIQELAEL-----EARQRLANQLGAVERFVQDSQTNTTLSRCHAALNPA 578

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKL-FDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
            +   LT        +S  A      K L +  R    +S RT +G  +  L +      
Sbjct: 579 AVSRKLTSLAATYVTESLAASMNAELKALGYKRRVQPDLSGRTELGVTKVTLRLQEIAAK 638

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
            +    S GEQ+ + + +FLA    + +       ++ D+ S  LD   R A+ R +  +
Sbjct: 639 ASKVL-SEGEQRALGMAMFLAELESLPH----NSTVIFDDPSTSLDHVYRRAIARRLVAL 693

Query: 342 GS--QIFMTGTDKSVFDSLN 359
               Q+ +   D      L 
Sbjct: 694 AEIRQVLVFTHDAVFLTELA 713


>gi|221117832|ref|XP_002168808.1| PREDICTED: similar to DNA recombination/repair protein, partial
          [Hydra magnipapillata]
          Length = 103

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 7  IKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          I+ + I   R+Y    S  + F    T+ VG NG GKT+I+E++ +++ G+
Sbjct: 4  IEKMQIQGIRSYPPHDSAVIEFQTPLTLIVGKNGTGKTSIIESLKYITTGK 54


>gi|330815612|ref|YP_004359317.1| DNA repair protein RecN [Burkholderia gladioli BSR3]
 gi|327368005|gb|AEA59361.1| DNA repair protein RecN [Burkholderia gladioli BSR3]
          Length = 549

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/297 (16%), Positives = 101/297 (34%), Gaps = 35/297 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L + FD+  T+F G+ G GK+ +++A++     RG      A V R
Sbjct: 2   LRHLSIRDFVIVAALDIEFDSGFTVFSGETGAGKSILIDALALALGERG-----DASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++     A+ S+ L    D + R    IN     +  + 
Sbjct: 57  TGCQRADLSAEFTPHDRVAQWLDAHAFEAEDSVMLRRVIDANGRSRAFINGTSATLSQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRGRNRL 172
           EL + L       +   +       +R   D    + A      R    +   +      
Sbjct: 117 ELGEMLVDVHGQHAHQLLMR--PDAQRELFDTHAGLSADAAVVARGWRAWRDALHH---- 170

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           +               ++A         ++  ++ L+    E+  + N  H +L+ +  L
Sbjct: 171 IEVAQTHERELQLEREKLA--------WQLAELDKLAPQPGEW-DEVNAEHQRLTHSASL 221

Query: 233 DGKFDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
                 +  A+ E     L   G  +  + +   I P  +D++       I +   S
Sbjct: 222 IDGVQGTLLAISESDEAMLTQLGAIISKVRQLAAIDPTLNDVLASLDPAEIQLREAS 278


>gi|270295002|ref|ZP_06201203.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274249|gb|EFA20110.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 359

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPG 53
          K L I  ++N   L +   A+  + VG N VGK+ +LEA+S +L+ G
Sbjct: 2  KSLYIKNYKNLRELSIDSLARVNLIVGCNNVGKSTLLEAVSIYLANG 48


>gi|260577084|ref|ZP_05845062.1| DNA repair protein RecN [Rhodobacter sp. SW2]
 gi|259020662|gb|EEW23980.1| DNA repair protein RecN [Rhodobacter sp. SW2]
          Length = 547

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 6/107 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRGLEIRDMLIIDRLSLAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFSTFAR-VEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+       A  +       D+  +     +  +   +IN    R 
Sbjct: 57  QGAEQGEVVAAFDLPPGHAARDVLAEAGIAAEDELILRRINHADGRK 103


>gi|302881605|ref|XP_003039713.1| hypothetical protein NECHADRAFT_50068 [Nectria haematococca mpVI
           77-13-4]
 gi|256720580|gb|EEU34000.1| hypothetical protein NECHADRAFT_50068 [Nectria haematococca mpVI
           77-13-4]
          Length = 1560

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 102/326 (31%), Gaps = 73/326 (22%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV- 64
            ++ LN+  FR           +  + +G NG GK+  L+AI+      G   AS  ++ 
Sbjct: 491 AVRGLNLEAFR----------GEIMVLLGANGSGKSTTLDAIA------GMHSASDGEIS 534

Query: 65  -----------------TRIGS---PSFFSTFARVEGMEGLADISI------KLETRDDR 98
                                          F  ++   G +  +         +    +
Sbjct: 535 LSYEMSGGKLGYCPQKNVLWDELTVEEHIHIFDGIKNTRGRSSATHIKRLIEGCDLSKKK 594

Query: 99  SVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSG-LSMERRRFLDRMVFAIDPR--- 154
           S     ++    R + +L   L     V  +D + SG   + RR+  D ++     R   
Sbjct: 595 STCAKALSGGQKRKL-QLALMLVGDSTVCCVDEVSSGVDPLSRRKLWDILLAQRGRRTIL 653

Query: 155 ---HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
              H     D   L+  R  +L+ G   +S  S    Q   LG +I++            
Sbjct: 654 LTTHFLDEAD---LLADRLAILSHGSLKASGTSVELKQTLGLGYRIHVYHPPGSAEHQVY 710

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
             E   K++   + LS +                E   +L    + D ++   + GP   
Sbjct: 711 GDELHTKQDEETVYLSGSS---------------ENTCRLLRRLEADGVTEYQVDGPTLE 755

Query: 272 DLIVDYCD----KAITIAHGSTGEQK 293
           D+ +   D    K    +  S   Q+
Sbjct: 756 DVFLKIADEDSPKPARKSRRSRSHQR 781


>gi|298490140|ref|YP_003720317.1| chromosome segregation protein SMC ['Nostoc azollae' 0708]
 gi|298232058|gb|ADI63194.1| chromosome segregation protein SMC ['Nostoc azollae' 0708]
          Length = 1217

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + IK + ++ F+++  +  +      T+  G NG GK+NIL+ + F   L+  +G R   
Sbjct: 2  VHIKRVELTNFKSFGGTTSVPLLPGCTVISGPNGSGKSNILDGLLFCLGLASSKGMRAER 61

Query: 61 YADVTR 66
            D+  
Sbjct: 62 LPDLVN 67


>gi|254417660|ref|ZP_05031393.1| hypothetical protein MC7420_649 [Microcoleus chthonoplastes PCC
          7420]
 gi|196175552|gb|EDX70583.1| hypothetical protein MC7420_649 [Microcoleus chthonoplastes PCC
          7420]
          Length = 356

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +K + I+ FR + + ++    +  +  G N  GKT +LEA+   +  +  R        R
Sbjct: 2  LKNIEITNFRCFEATKISGFKRVNLIGGQNNAGKTALLEAVLLNNCPKS-RTIIELKRIR 60

Query: 67 IGSPS 71
            +  
Sbjct: 61 QEASD 65


>gi|126340324|ref|XP_001362224.1| PREDICTED: similar to SMC1 protein [Monodelphis domestica]
          Length = 1233

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
          +K + I  F++Y     +    + T  +G NG GK+N+++AISF+   +    R  +  D
Sbjct: 4  LKLIEIENFKSYKGKQIIGPFQRFTAIIGPNGSGKSNLMDAISFVLGEKTSNLRVKTLRD 63

Query: 64 VTRIGSP 70
          +   G+P
Sbjct: 64 LI-HGAP 69


>gi|115465843|ref|NP_001056521.1| Os05g0596600 [Oryza sativa Japonica Group]
 gi|57900674|gb|AAW57799.1| putative SMC5 protein [Oryza sativa Japonica Group]
 gi|113580072|dbj|BAF18435.1| Os05g0596600 [Oryza sativa Japonica Group]
 gi|215768112|dbj|BAH00341.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1065

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 14/134 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  Y  L      +  + VG NG GK++++ AI+           R +S A 
Sbjct: 40  IVEIELCNFMTYDHLTCRPGPRLNLVVGPNGSGKSSLVCAIALALAADPAILGRASSVAA 99

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-IND--VVIRVVDELNKHL 120
             + G  S      ++       D  + +  + D + +    ++   V  + V +L K  
Sbjct: 100 FVKRGEDSG---HVKISLRGNTPDHKLCITRKVDTNNKSEWQLDGTTVPKKEVIDLIKKF 156

Query: 121 RISW-----LVPSM 129
            I        +P  
Sbjct: 157 NIQVNNLTQFLPQD 170


>gi|329965379|ref|ZP_08302303.1| conserved domain protein [Bacteroides fluxus YIT 12057]
 gi|328522171|gb|EGF49285.1| conserved domain protein [Bacteroides fluxus YIT 12057]
          Length = 445

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 13/79 (16%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-----------LSPG 53
          ++IK +NI  F+ + +  + F+   T+ +G+N  GKT +L+A+             L  G
Sbjct: 1  MRIKEVNIVNFKGFQNETVTFNGNLTVVIGNNTAGKTTLLKALQVGLGAYLQSLKTLPGG 60

Query: 54 RGFRR--ASYADVTRIGSP 70
            +RR  +S     R    
Sbjct: 61 TSYRRNFSSLDKFMRFDQE 79


>gi|310817573|ref|YP_003949931.1| DNA replication and repair protein [Stigmatella aurantiaca
          DW4/3-1]
 gi|309390645|gb|ADO68104.1| DNA replication and repair protein [Stigmatella aurantiaca
          DW4/3-1]
          Length = 152

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +  L +  F++Y S RL      T+ +G N  GK+N+LEA+  LS     R    +++
Sbjct: 2  LAALGVDNFKSYRSARLPLAE-LTVLIGANASGKSNLLEALQMLSWLA--RGRRLSEI 56


>gi|309789625|ref|ZP_07684206.1| hypothetical protein OSCT_0157 [Oscillochloris trichoides DG6]
 gi|308228361|gb|EFO82008.1| hypothetical protein OSCT_0157 [Oscillochloris trichoides DG6]
          Length = 398

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 15/115 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA---- 62
           I+ +++  F+ +A   + F    T+ VG N  GK+++++A+  L   +    +       
Sbjct: 2   IEQVHLHNFKCFAEQTITFGP-LTLLVGANAAGKSSVIQALLLLR--QSHLASMLQGGNL 58

Query: 63  ----DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
               D+  +G+ S         G     DI I+L             +    +  
Sbjct: 59  LLRGDLINVGTQS----EVIYRGERTNNDIEIRLTCDSKSQNFIYTFDIERAKEY 109


>gi|255025286|ref|ZP_05297272.1| hypothetical protein LmonocytFSL_01352 [Listeria monocytogenes FSL
           J2-003]
          Length = 267

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 5   IKI--KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +KI  K L +  F+N+ +L + ++ Q T   G NG GKT++ EA+++L  G         
Sbjct: 1   MKIVFKQLTLENFKNHKNLVVDYE-QVTQISGKNGFGKTSVGEAVTWLLYGTDLLGTKIE 59

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                  P        V  +       + L  +  ++ +   IN+V  R   E    +  
Sbjct: 60  P-----QPLGTEEEVHVSLLINADGKDLLLTKKQKKTAKYA-INEVP-RKATEFADMIDS 112

Query: 123 SW 124
            +
Sbjct: 113 LF 114


>gi|254525598|ref|ZP_05137650.1| chromosome segregation protein SMC [Prochlorococcus marinus str.
          MIT 9202]
 gi|221537022|gb|EEE39475.1| chromosome segregation protein SMC [Prochlorococcus marinus str.
          MIT 9202]
          Length = 1194

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 12/96 (12%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  +    F+++  ++++  +   T+  G NG GK+NIL+ I F   L+  RG R   
Sbjct: 2  VHINQVEFENFKSFGGNVKIPLEEGFTVVTGPNGSGKSNILDGILFCLGLANSRGMRAER 61

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
            D+               EG      +S+K   +D
Sbjct: 62 LPDLINNSK--------VKEGKSSETSVSVKFNIQD 89


>gi|198468360|ref|XP_001354674.2| GA22046 [Drosophila pseudoobscura pseudoobscura]
 gi|198146378|gb|EAL31729.2| GA22046 [Drosophila pseudoobscura pseudoobscura]
          Length = 1200

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MHIKQIIIQGFKSYKDQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A VE +    D  + ++  +      + +  V+    D+   + +
Sbjct: 61  RQSLLHEGTGARVISAYVEIIFDNTDNRVPIDKEE------IFLRRVIGAKKDQYFLNKK 114

Query: 122 IS 123
           + 
Sbjct: 115 VV 116


>gi|167384472|ref|XP_001736969.1| structural maintenance of chromosomes protein [Entamoeba dispar
           SAW760]
 gi|165900465|gb|EDR26776.1| structural maintenance of chromosomes protein, putative [Entamoeba
           dispar SAW760]
          Length = 1027

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 5/114 (4%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RR 58
           +R  I  + +  F  Y S+ +       + +G NG GK++I+ AI+ L  G       R 
Sbjct: 13  HRGSIIRIKMERFLTYDSVEVFPGKGLNVIIGPNGAGKSSIVCAIA-LGLGTAPKVLGRS 71

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
               D  +IG            G+    ++ I+ +                   
Sbjct: 72  KDLKDFVKIGEEDAVIEVELFNGITRANNLVIRRQFNLSNQSNWFINGRTASHK 125


>gi|163868704|ref|YP_001609916.1| DNA repair protein RecN [Bartonella tribocorum CIP 105476]
 gi|161018363|emb|CAK01921.1| DNA repair protein RecN [Bartonella tribocorum CIP 105476]
          Length = 553

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 95/269 (35%), Gaps = 34/269 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I       +L + F A  T+  G+ G GK+ +L+A+S    GRG      A + R
Sbjct: 2   LIQLSIHNIVLIETLDIHFTAGLTVLTGETGAGKSILLDALSLALGGRG-----DASLVR 56

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+     T               R  G +   DI ++     D   R    + V    +
Sbjct: 57  HGTDRGQVTAVFDVPISHPARQLIRENGFDDEGDIILRRVQSSDGRSRVFINDQVASVSL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRF-----LDRMVFAIDPRHRRRMIDF-ERLMR 167
                 L +       DR    +++ R+       L+  V  +   + R   +  ERL +
Sbjct: 117 MRSVGRLLVEIHGQHDDRALVDVAIHRQLLDAFGGLEDEVENLRQCY-RVWHECEERLQK 175

Query: 168 GR----NRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEM--INALSSLIMEYVQKE 219
            R    N      Y  +       ++ Q+ E    +++ R +M  +  +++ I E     
Sbjct: 176 QRLKVENATREMDYLRACVEELEKLDFQVGEE-EALSLRRADMLKLEKIATDIKEADDLL 234

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           +     + +   L  + ++     +E  A
Sbjct: 235 SGQKSPIPMLSNLVRRLERKIPEAEELIA 263


>gi|88603016|ref|YP_503194.1| hypothetical protein Mhun_1754 [Methanospirillum hungatei JF-1]
 gi|88188478|gb|ABD41475.1| conserved hypothetical protein [Methanospirillum hungatei JF-1]
          Length = 405

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG----RGFRRA-- 59
           +I+ L +  +R    L L      TIF+G NG GK+ I +  +FLS       G R A  
Sbjct: 11  QIEKLEVKNYRVLRHLELSKLTPLTIFIGPNGSGKSTIFDVFAFLSECFTQPGGLRTAWE 70

Query: 60  ---SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
               +  +   GS    S   +         I+  LE  +    
Sbjct: 71  KRGRFKHLRSRGSTDPISIEIKYREKSDSPLITYHLEIDERERG 114


>gi|42627759|tpe|CAD59554.1| TPA: SMC3 protein [Bos taurus]
          Length = 1217

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 908  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 965

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 966  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1025

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1026 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGPQS 1085

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1086 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1135

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1136 PAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 1182


>gi|119569943|gb|EAW49558.1| chondroitin sulfate proteoglycan 6 (bamacan), isoform CRA_b [Homo
           sapiens]
          Length = 1218

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 909  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 966

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 967  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1026

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1027 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQS 1086

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1087 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1136

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1137 PAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 1183


>gi|154244624|ref|YP_001415582.1| ATP-dependent endonuclease family protein [Xanthobacter
          autotrophicus Py2]
 gi|154158709|gb|ABS65925.1| ATP-dependent endonuclease family protein [Xanthobacter
          autotrophicus Py2]
          Length = 619

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++   L I+ FR   S  L    QH + +GDN  GKT ILEA+  
Sbjct: 1  MRACRLTITNFRGVKSATLHL-PQHGVLIGDNNTGKTTILEALDL 44


>gi|257458232|ref|ZP_05623382.1| chromosome segregation protein SMC [Treponema vincentii ATCC 35580]
 gi|257444342|gb|EEV19435.1| chromosome segregation protein SMC [Treponema vincentii ATCC 35580]
          Length = 982

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 65/162 (40%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K L I  F+++A   R+ F    T  +G NG GK+N+++A+   L     +  R   
Sbjct: 1   MFLKSLEIFGFKSFADRTRIEFAEGITALLGPNGCGKSNVVDAMKWVLGEQASKTLRAEK 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+ S            +    GL ++    I ++ R  RS      IN+  +R
Sbjct: 61  MEDVIFNGTESRKALNVAEVTLTISNENGLLNLEVSEIAIKRRLYRSGESEYFINNTPVR 120

Query: 112 V--VDELNKHLRI------SWLVPSMDRIFSGLSMERRRFLD 145
           +  + EL     +            +D+I S    +RR   +
Sbjct: 121 LKELRELFWDTGVGKAAYSVMEQGKIDQILSSKPEDRRYLFE 162


>gi|225872185|ref|YP_002753640.1| DNA repair protein RecN [Acidobacterium capsulatum ATCC 51196]
 gi|225793691|gb|ACO33781.1| DNA repair protein RecN [Acidobacterium capsulatum ATCC 51196]
          Length = 561

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 61/206 (29%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L    +        VF     +  G+ G GK+ +++A++ L   +     + AD+ R
Sbjct: 2   LLELRAENYAVIDHAIAVFGPGLNLLTGETGAGKSILVDALALLMGAK-----ASADLVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGL-ADISIKLETRDDRSVRCLQIND-VVIRVV 113
            G+                      G++    +I ++ E  +    R    N    + V+
Sbjct: 57  HGAERAVVACVFESTAGAEAVLEANGIDAQGEEIILRREISESGKGRVFINNQPATVTVL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            +L   L +          F          RF +         + +   D    ++ +  
Sbjct: 117 RQLAPELALVHAQSETLGSFDHAQQRGLLDRFANLFTAQAATAY-QSWRD----VQQKLD 171

Query: 172 LLTEGYFDS-SWCSSIEAQMAELGVK 196
            L     D          Q  E+G  
Sbjct: 172 ALERDEQDRLRMLDLWSFQHKEIGSA 197


>gi|261341712|ref|ZP_05969570.1| hypothetical protein ENTCAN_08185 [Enterobacter cancerogenus ATCC
          35316]
 gi|288316074|gb|EFC55012.1| SMC family protein [Enterobacter cancerogenus ATCC 35316]
          Length = 362

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          IK L+I  +R+   + L  + Q  I  G NG GK+NI +AI  +
Sbjct: 2  IKTLHIENYRSIRRMSLELE-QLNIVFGPNGTGKSNIYKAIHLM 44


>gi|255102286|ref|ZP_05331263.1| DNA sulfur modification protein DndD [Clostridium difficile
          QCD-63q42]
          Length = 719

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNYAS-----LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +KI  L +  FR+Y       L    D    +  G NG GK+ I EAI     G
Sbjct: 1  MKINKLVLKNFRSYEEETTFNLNTTSDKNIILIGGKNGAGKSTIFEAIKLCIYG 54


>gi|292654853|ref|YP_003534750.1| chromosome segregation protein SMC [Haloferax volcanii DS2]
 gi|291370379|gb|ADE02606.1| chromosome segregation protein SMC [Haloferax volcanii DS2]
          Length = 1240

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + IK L +  F+++    R+ F    T+  G NG GK+NI++ + F   L+  RG R   
Sbjct: 1  MHIKELVLDGFKSFGRPTRIPFYEDFTVVTGPNGSGKSNIIDGVLFALGLARTRGIRAEK 60

Query: 61 YADVT 65
            D+ 
Sbjct: 61 LTDLI 65


>gi|164691107|dbj|BAF98736.1| unnamed protein product [Homo sapiens]
          Length = 1217

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 908  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 965

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 966  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1025

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1026 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQS 1085

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1086 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1135

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1136 PAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 1182


>gi|77405296|ref|ZP_00782392.1| chromosome segregation protein, putative [Streptococcus agalactiae
           H36B]
 gi|77176091|gb|EAO78864.1| chromosome segregation protein, putative [Streptococcus agalactiae
           H36B]
          Length = 439

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 56/408 (13%), Positives = 120/408 (29%), Gaps = 84/408 (20%)

Query: 7   IKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-- 63
           I  L I   +   ++++       TI  G+N  GKT++L++I+++  G  F+ +  A   
Sbjct: 5   INKLEIENVKRIKAVKVEPSSKGLTIIGGNNNQGKTSVLDSIAWVLGGNKFKPSQAAREG 64

Query: 64  --------------VT--RIGSPSFFSTF---ARVEGMEGLADISIKLETRDDRSVRCLQ 104
                         +   R G  S         +  G + L     +L     +      
Sbjct: 65  TMVPPTLKITMSNGLIVERKGKNSSLKVIDPNGQKGGQQLLDSFVEELAINLPK-----F 119

Query: 105 INDVVIRVVDELNKHLRI--SWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRH- 155
           ++       D L + + +       +   +       +R  +  +    +      P + 
Sbjct: 120 MDGTPKEKADVLLEIIGVGDQL---AELELKEKELYNQRHTIGVIADQKEKFAKEQPYYN 176

Query: 156 ---------RRRMIDFERLM-------RGRNRLLT---EGYFDSSWCSSIEAQMA----- 191
                       +   + ++       R R  L        F  S    ++ Q+A     
Sbjct: 177 DAPKELISIADLIQQQQEVLAKNGENARKRQNLSVIQQNHQFKQSEVEHLKQQLATAEKQ 236

Query: 192 --ELGVKINIARVEMINALSSLIMEYVQKEN-FPHIKLSLTGFLDGKFDQSFCALKEEYA 248
             EL   + IA+ + ++ +     E  +  +    +   +   LD    +     + E  
Sbjct: 237 LQELSSDLEIAQRDTMSLIDESTAEIEENISNIEEVNRKVRANLDKDKAEEDAKHQREQY 296

Query: 249 KKLFDGRKMDSMSRRTLI--------GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             L +  +     +R L+        G    D  + Y  +      GS  +Q +V   I 
Sbjct: 297 NILTNDIESIRQQKRDLLINADLPLEGLSVDDGKLLYLGQEWDNMSGS--QQLIVATAIV 354

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
                            +L +    +D        + +   G Q   T
Sbjct: 355 --------RKLKPDCGFVLIDKLEQMDNITLEQFGKWLEQEGLQAIAT 394


>gi|295425227|ref|ZP_06817930.1| DNA repair protein RecN [Lactobacillus amylolyticus DSM 11664]
 gi|295065003|gb|EFG55908.1| DNA repair protein RecN [Lactobacillus amylolyticus DSM 11664]
          Length = 562

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 87/262 (33%), Gaps = 61/262 (23%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L++ F    T+ +G+ G GK+ +++A+S L  GRG       ++ R
Sbjct: 2   LVELDIKNFAIIKALKVRFQEHMTVLIGETGAGKSILIDAVSLLMGGRG-----QKEMIR 56

Query: 67  IGSPSFFST-----------FARVEGMEGLADISIKLETRDD---RSVRCLQINDV--VI 110
            G      T            A +    GL     +L    +   +    ++IN     I
Sbjct: 57  TGEKKAVVTGLFELDDQKEKIAALCDQYGLPHDDDQLVISRELAAKGRNVVRINGQLTTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+  +L           +         R +D +          ++  ++       
Sbjct: 117 NVLREIGNYLVDIHGQNDQQILMDQD-----RQIDLVDNYASKEFHEKLAQYQ------- 164

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLS 227
                   +      + +Q+                 L     E  QK++   F H +L 
Sbjct: 165 -------TNFHEWQKLSSQL---------------RHLRQDAQELAQKQDILQFQHDELE 202

Query: 228 LTGFLDGKFDQSFCALKEEYAK 249
                D K D+    L+EE+ +
Sbjct: 203 AANLEDPKEDE---KLEEEFNE 221


>gi|282898117|ref|ZP_06306112.1| Exonuclease SbcC [Raphidiopsis brookii D9]
 gi|281197261|gb|EFA72162.1| Exonuclease SbcC [Raphidiopsis brookii D9]
          Length = 1005

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 9  FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L +  F +Y    L F   HT    G NG GK+++LE+I++   G+  R     DV   
Sbjct: 5  RLILKNFLSYRDATLDFTGLHTACICGPNGAGKSSLLESITWAIWGQS-RANIEDDVIYA 63

Query: 68 GSPSFFSTFARVEGMEGLADISIK 91
          G+      F     ++    I  +
Sbjct: 64 GAQEVRVDFTFYNNLQKYRVIRTR 87


>gi|242822652|ref|XP_002487931.1| cohesin complex subunit  (Psm1), putative [Talaromyces stipitatus
          ATCC 10500]
 gi|218712852|gb|EED12277.1| cohesin complex subunit (Psm1), putative [Talaromyces stipitatus
          ATCC 10500]
          Length = 1265

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y    + L  DA  T  +G NG GK+N ++AISF+   +    R  + 
Sbjct: 3  KLVRLELFNFKSYKGHHVLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTNL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 KDLVYRG 69


>gi|148669759|gb|EDL01706.1| mCG20864 [Mus musculus]
          Length = 657

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250


>gi|301755544|ref|XP_002913607.1| PREDICTED: structural maintenance of chromosomes protein 3-like
           [Ailuropoda melanoleuca]
          Length = 1217

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 908  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 965

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 966  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1025

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1026 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQS 1085

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1086 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1135

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1136 PAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 1182


>gi|239623498|ref|ZP_04666529.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239521529|gb|EEQ61395.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 626

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 28/51 (54%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          N +++ +L+I  F++   L +    +  I VG N  GKT++L+A+  +   
Sbjct: 8  NHMQLTYLHIRNFKSIRDLEIRDIDRALILVGKNNTGKTSVLDAVCAVCGC 58


>gi|149040398|gb|EDL94436.1| chondroitin sulfate proteoglycan 6, isoform CRA_a [Rattus
           norvegicus]
          Length = 696

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250


>gi|126273109|ref|XP_001368555.1| PREDICTED: similar to chromosome-associated polypeptide
           [Monodelphis domestica]
          Length = 1217

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 908  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 965

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 966  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1025

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1026 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSTESERGSGSQS 1085

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1086 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1135

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1136 PAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 1182


>gi|4885399|ref|NP_005436.1| structural maintenance of chromosomes protein 3 [Homo sapiens]
 gi|158517902|ref|NP_113771.2| structural maintenance of chromosomes protein 3 [Rattus norvegicus]
 gi|197101619|ref|NP_001126947.1| structural maintenance of chromosomes protein 3 [Pongo abelii]
 gi|149689674|ref|XP_001496837.1| PREDICTED: similar to Structural maintenance of chromosomes protein
           3 (Chondroitin sulfate proteoglycan 6)
           (Chromosome-associated polypeptide) (hCAP) (Bamacan)
           (Basement membrane-associated chondroitin proteoglycan)
           [Equus caballus]
 gi|194042017|ref|XP_001926614.1| PREDICTED: structural maintenance of chromosomes protein 3 [Sus
           scrofa]
 gi|291404811|ref|XP_002718785.1| PREDICTED: structural maintenance of chromosomes 3 [Oryctolagus
           cuniculus]
 gi|296221205|ref|XP_002756637.1| PREDICTED: structural maintenance of chromosomes protein 3
           [Callithrix jacchus]
 gi|332835297|ref|XP_508031.3| PREDICTED: structural maintenance of chromosomes protein 3 [Pan
           troglodytes]
 gi|29337005|sp|Q9UQE7|SMC3_HUMAN RecName: Full=Structural maintenance of chromosomes protein 3;
           Short=SMC protein 3; Short=SMC-3; AltName: Full=Basement
           membrane-associated chondroitin proteoglycan;
           Short=Bamacan; AltName: Full=Chondroitin sulfate
           proteoglycan 6; AltName: Full=Chromosome-associated
           polypeptide; Short=hCAP
 gi|71153768|sp|Q5R4K5|SMC3_PONAB RecName: Full=Structural maintenance of chromosomes protein 3;
           Short=SMC protein 3; Short=SMC-3; AltName:
           Full=Chondroitin sulfate proteoglycan 6
 gi|3089368|gb|AAC14893.1| chromosome-associated polypeptide [Homo sapiens]
 gi|55733256|emb|CAH93311.1| hypothetical protein [Pongo abelii]
 gi|55959087|emb|CAI16576.1| structural maintenance of chromosomes 3 [Homo sapiens]
 gi|119569942|gb|EAW49557.1| chondroitin sulfate proteoglycan 6 (bamacan), isoform CRA_a [Homo
           sapiens]
 gi|149040399|gb|EDL94437.1| chondroitin sulfate proteoglycan 6, isoform CRA_b [Rattus
           norvegicus]
 gi|157279396|gb|AAI53264.1| SMC3 protein [Bos taurus]
 gi|158260565|dbj|BAF82460.1| unnamed protein product [Homo sapiens]
 gi|306921253|dbj|BAJ17706.1| structural maintenance of chromosomes 3 [synthetic construct]
          Length = 1217

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 908  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 965

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 966  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1025

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1026 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQS 1085

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1086 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1135

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1136 PAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 1182


>gi|332285189|ref|YP_004417100.1| DNA repair protein [Pusillimonas sp. T7-7]
 gi|330429142|gb|AEC20476.1| DNA repair protein [Pusillimonas sp. T7-7]
          Length = 551

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 57/157 (36%), Gaps = 19/157 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F       + F A  T+F G+ G GK+ +++A+S     RG      A   R
Sbjct: 2   LRSLHIRDFVIVDQAEIPFAAGFTVFSGETGAGKSILIDALSLALGARG-----DASAIR 56

Query: 67  IGSPSF---------FSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVI--RVVD 114
            G+             S  A ++  E   D  + L    D   R    IN + +    + 
Sbjct: 57  DGATRADISAVFSPPASLLAWLQEHEFANDDDLILRRVIDAQGRSRSFINGLPVTLSQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           EL + L       +   +    S   R  LD     +
Sbjct: 117 ELGEQLVDIHGQHAHQSLLKAASQ--RELLDTQGGHL 151


>gi|149924994|ref|ZP_01913318.1| Chromosome segregation protein SMC [Plesiocystis pacifica SIR-1]
 gi|149814141|gb|EDM73760.1| Chromosome segregation protein SMC [Plesiocystis pacifica SIR-1]
          Length = 651

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 66/392 (16%), Positives = 129/392 (32%), Gaps = 71/392 (18%)

Query: 5   IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++IK + +  F+++A   +V  D   T  +G NG GK+NI++AI +       +  R   
Sbjct: 1   MRIKKIEVIGFKSFADREVVVLDDHVTAVIGPNGCGKSNIVDAIRWCLGEQRAKHLRGGG 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR------------SVRCLQ---- 104
            ADV   GS +         G  G+A+++I  E+  D             S R  +    
Sbjct: 61  MADVIFAGSST--------RGPAGMAEVTITFESEGDGPSAFHQFAEIAVSRRLYRDGTS 112

Query: 105 ---INDVVIRVVDELNKHLRISWLVPSM----------DRIFSGLSMERRRFLDRMVF-- 149
              IN V  R + ++N  L  + +                + +     RR+ +D      
Sbjct: 113 EYLINKVPCR-LRDINDMLAGTGISAKSGYSIIEQGRVGELVTSKPETRRKVIDEAAGIT 171

Query: 150 -------AIDPRHRRRMIDFERL------MRGRNRLLTEGYFDSSWCSSI-----EAQMA 191
                      +  +   +  R+      + GR   L      +           + ++ 
Sbjct: 172 KFKQQKVQATRKIDQTRQNLLRVTDVIGELEGRLGSLKRQAQKAERYKRYRTELRDLELW 231

Query: 192 ELGVKINIAR--VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
               K+   R    ++    S + E V+               + + +    AL+E  +K
Sbjct: 232 HASHKLLELRATARVLERRRSELEEQVEDLRNESAT------REARHEAERVALREAESK 285

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
              + +++  +  R  +        +   D     A  S  E++ V   +    A     
Sbjct: 286 LQHEQQRLYDLENRIQLIEQDRRFKLQEQDGLRRSAEQSRAEKEAVERSLESLEAEHKEV 345

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               A +   DE    L E +   L   + D+
Sbjct: 346 EAQRAELGADDEGGEGL-EARCETLEAELNDL 376


>gi|91225100|ref|ZP_01260322.1| DNA repair protein RecN [Vibrio alginolyticus 12G01]
 gi|91190043|gb|EAS76314.1| DNA repair protein RecN [Vibrio alginolyticus 12G01]
          Length = 554

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----ADAGMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  + L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFLLDNNLHATRWLEDNDLLDGSECILRRSITKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+    ++         +     +  ++
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMK--SEHQMAMLDQYAGHLNLLKSTRSAYQHWRQADNNLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
                  +             ++ EL 
Sbjct: 175 QLKENSQQNQAQKQLLEYQIKELNELS 201


>gi|38566257|gb|AAH62935.1| Structural maintenace of chromosomes 3 [Mus musculus]
          Length = 1216

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 907  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 964

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 965  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1024

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1025 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQS 1084

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1085 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1134

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1135 PAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 1181


>gi|37521058|ref|NP_924435.1| hypothetical protein gll1489 [Gloeobacter violaceus PCC 7421]
 gi|35212054|dbj|BAC89430.1| gll1489 [Gloeobacter violaceus PCC 7421]
          Length = 437

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +K + I  +++  +L +      ++F G N  GK+N L+A+  LS
Sbjct: 2  LKRVKIKGYKSLENLEVDLKP-LSVFFGPNAAGKSNFLDALQLLS 45


>gi|36031035|ref|NP_031816.2| structural maintenance of chromosomes protein 3 [Mus musculus]
 gi|29336931|sp|Q9CW03|SMC3_MOUSE RecName: Full=Structural maintenance of chromosomes protein 3;
           Short=SMC protein 3; Short=SMC-3; AltName: Full=Basement
           membrane-associated chondroitin proteoglycan;
           Short=Bamacan; AltName: Full=Chondroitin sulfate
           proteoglycan 6; AltName: Full=Chromosome segregation
           protein SmcD; AltName: Full=Mad member-interacting
           protein 1
 gi|4689090|gb|AAD27754.1|AF047601_1 SMCD [Mus musculus]
 gi|5326862|gb|AAD42073.1|AF141294_1 bamacan [Mus musculus]
 gi|95104800|gb|ABF51669.1| Cspg6 [Mus musculus]
          Length = 1217

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 908  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 965

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 966  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1025

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1026 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQS 1085

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1086 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1135

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1136 PAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 1182


>gi|330889722|gb|EGH22383.1| ATP binding protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 452

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 65/371 (17%), Positives = 136/371 (36%), Gaps = 49/371 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAI-----SFLSPG 53
           ++IK   +     ++ L +          + T+ VG+NG GKT +L+++       ++  
Sbjct: 1   MEIKSFKLVNVGRFSDLEVALAPTERHASKVTVLVGNNGAGKTTLLKSVATSLSWLVARV 60

Query: 54  RGFRRA---SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           R  + A      D+ + G+ +  S   R+E +    D    LE+    +      N    
Sbjct: 61  RTPKGAGSRIDEDMVQNGTAT-SSITIRIEDVLISDDEINPLESEWAITATRKGRNATSS 119

Query: 111 RVVDELNKH-----LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            V+ ELN+       +++    +   + +   +ER   ++  +  +      ++  ++  
Sbjct: 120 TVLSELNRLADGYRSKLTEKSDTSLPLLAFYPVER-SVIEIPLKVLARHTFDQLDGYD-- 176

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
               N L     F   +    E + +E    I+    E++N LS  I+  +  E +  + 
Sbjct: 177 ----NALGRGVDFRRFFEWFREREDSENETGIS---TELLNELSQKIL--IDTELWKVLT 227

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
                  D +      A+ E +   L   R              R  + +D   K + ++
Sbjct: 228 REHASSRDRQLTAVRTAV-EAFMPGLTKLRVRRK---------PRLHMAIDKEGKTLNVS 277

Query: 286 HGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
             S GE+ ++ +       LA     + N      I+L+DE+  HL    + +L   +T 
Sbjct: 278 QLSQGEKSMMALVGDIARRLAMMNPALENPLHGNGIVLIDEVDLHLHPKWQRSLIAQLTT 337

Query: 341 I--GSQIFMTG 349
                Q  +T 
Sbjct: 338 TFPNCQFLLTT 348


>gi|188535876|ref|YP_001905936.1| Predicted ATP-dependent endonuclease of the OLD family [Erwinia
          tasmaniensis Et1/99]
 gi|188027180|emb|CAO95007.1| Predicted ATP-dependent endonuclease of the OLD family [Erwinia
          tasmaniensis Et1/99]
          Length = 608

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +++K + ++ FR Y + + +  D   T  VG N  GK+ ILEA++  
Sbjct: 1  MRLKKIKLTNFRGYRNTIEIPVDEAMTGIVGRNDFGKSTILEALAIF 47


>gi|157412408|ref|YP_001483274.1| SMC ATPase superfamily chromosome segregation protein
          [Prochlorococcus marinus str. MIT 9215]
 gi|157386983|gb|ABV49688.1| putative chromosome segregation protein, SMC ATPase superfamily
          [Prochlorococcus marinus str. MIT 9215]
          Length = 1196

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 12/96 (12%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  +    F+++  ++++  +   T+  G NG GK+NIL+ I F   L+  RG R   
Sbjct: 4  VHINQVEFENFKSFGGNVKIPLEEGFTVVTGPNGSGKSNILDGILFCLGLANSRGMRAER 63

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
            D+               EG      +S+K   +D
Sbjct: 64 LPDLINNSK--------VKEGKSSETSVSVKFNIQD 91


>gi|94967627|ref|YP_589675.1| DNA repair protein RecN [Candidatus Koribacter versatilis Ellin345]
 gi|94549677|gb|ABF39601.1| DNA replication and repair protein RecN [Candidatus Koribacter
           versatilis Ellin345]
          Length = 572

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 87/273 (31%), Gaps = 40/273 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  +    ++ + F     +  G+ G GK+ +++A++ L   +     + ADV R
Sbjct: 13  LLELRVENYAVIDNVVVEFAPGLNLLTGETGAGKSILIDALTLLLGDK-----ASADVIR 67

Query: 67  IGSPSFFSTFA------------RVEGMEGLAD-ISIKLETRDDRSVRCLQIND-VVIRV 112
            G+                       G++   D I ++ E   +   R    N    + V
Sbjct: 68  HGTDKAVVAAVFEAEPGGIAPVLEENGLDAEGDQIILRREITANGRGRVFINNQPATVSV 127

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD----------RMVFAIDPRHRRRMIDF 162
           + +L  HL +  +      +       R   LD              A       R+ D 
Sbjct: 128 LKQLAPHLAV--IHAQNAAVLGFDPASRLALLDSYAGADLHPTTEAHAKWREITARIADL 185

Query: 163 ERLMRGRNRLL-----TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
           ER  + R RLL          D +     E +  E   ++      + +A         +
Sbjct: 186 ERDEQDRLRLLDLWKFQREEIDQADLKPGEDEALEAEKRVLANSERVFSAAMGAFDHLYE 245

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            E     +L        K  +    L E++ ++
Sbjct: 246 AEGSASEQLK----AAAKQLEDLARLDEKFREQ 274


>gi|147900881|ref|NP_001083742.1| structural maintenance of chromosomes 3 [Xenopus laevis]
 gi|27263154|emb|CAD59446.1| structural maintenance of chromosomes protein 3 [Xenopus laevis]
          Length = 1217

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 83/266 (31%), Gaps = 41/266 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM 257
            D         +   Y ++L + R  
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAK 238



 Score = 39.9 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 15/112 (13%)

Query: 256  KMDSMSRRTLIGPHRSDL-----IVDYCDKAITIAHGST---GEQKVVLVGIFLAHARLI 307
            + +  S      P           V +  K   +        G++ +V + +  A     
Sbjct: 1076 ESERGSGTQSSVPSVDQFTGVGIRVSFTGKQAEMREMQQLSGGQKSLVALALIFA----- 1130

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDS 357
                  AP  L DEI   LD   R A+  ++ ++ S  Q   T     + +S
Sbjct: 1131 IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELASHAQFITTTFRPELLES 1182


>gi|45383139|ref|NP_989848.1| structural maintenance of chromosomes protein 3 [Gallus gallus]
 gi|224052801|ref|XP_002197776.1| PREDICTED: structural maintenance of chromosomes 3 [Taeniopygia
           guttata]
 gi|26801170|emb|CAD58708.1| cohesin complex subunit [Gallus gallus]
          Length = 1217

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 908  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 965

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 966  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1025

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1026 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSTESERGSGSQS 1085

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1086 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1135

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1136 PAPFYLFDEIDQALDAQHRKAVSDMIMELAEHAQFITTTFRPELLES 1182


>gi|74096355|ref|NP_001027867.1| SMC1 beta protein [Takifugu rubripes]
 gi|27805177|emb|CAD58847.2| SMC1 beta protein [Takifugu rubripes]
          Length = 1245

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 64/178 (35%), Gaps = 17/178 (9%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
           +K + I  F+++     +    + +  +G NG GK+N+++A+SF    R    R     D
Sbjct: 4   LKQIEIENFKSWRGRRIIGPLMRFSCIIGTNGSGKSNLMDALSFAMGERSSTLRVKQLRD 63

Query: 64  VT---RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           +     IG P   S    +    G A+  +    R   +     IN+V   +   L K  
Sbjct: 64  LIHGAHIGQPVSDSASVAI-RYRGDAEQEVVFCRRILGNSSEYFINNVKFTLAKYLEKLE 122

Query: 121 RISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            +  +  + + +               ER +  +  +          +   E L++ +
Sbjct: 123 MVGIVSKAQNCLVFQGTVETIALKEPKERTKMFE-SISQSKELAAEYIRRKEALLKAK 179


>gi|312378100|gb|EFR24763.1| hypothetical protein AND_10429 [Anopheles darlingi]
          Length = 763

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 17/126 (13%)

Query: 5   IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + I  F++Y      + FD +     G NG GK+NIL++I F   +S     R  
Sbjct: 1   MYIKSIIIDGFKSYRYRTEVVGFDPEFNAITGLNGTGKSNILDSICFVLGISNLVHVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+    G          +            G E   +ISI  +   +   + +    
Sbjct: 61  SLQDLVYMSGQAGVTKATVTLVFDNSNPNQCPIGYENCDEISITRQIVVNGKNKYMINGR 120

Query: 108 VVIRVV 113
            V    
Sbjct: 121 SVQNKR 126


>gi|302897327|ref|XP_003047542.1| condensin complex component SMC1 [Nectria haematococca mpVI
          77-13-4]
 gi|256728473|gb|EEU41829.1| condensin complex component SMC1 [Nectria haematococca mpVI
          77-13-4]
          Length = 1254

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F D+  T  +G NG GK+N ++AISF+   +    R A  
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDSYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSAHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 KDLVYRG 69


>gi|221214436|ref|ZP_03587407.1| DNA repair protein RecN [Burkholderia multivorans CGD1]
 gi|221165693|gb|EED98168.1| DNA repair protein RecN [Burkholderia multivorans CGD1]
          Length = 549

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 30/257 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FDA  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDAGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++     A+ ++ L    D + R    IN     +  + 
Sbjct: 57  TGCSRADITAEFTPHDRVARWLDEHAFDAEDTVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 ELGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAE--AANVARAWRVWRDATQAID 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+ ++ +  H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQPGEW-EEVSAEHKRLSHSANLIE 223

Query: 235 KFDQSFCALKEEYAKKL 251
               +  AL E     L
Sbjct: 224 GVRGALDALSESDEAML 240


>gi|219113225|ref|XP_002186196.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583046|gb|ACI65666.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1356

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFR 57
             R+ I  + +  F++YA ++    F    +  VG NG GK+N+++A+ F+     +  R
Sbjct: 34  PPRLMISKMELENFKSYAGVKTIGPFHKCFSAVVGPNGSGKSNVIDAMLFVFGKRAKKLR 93

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               +++            ARV       
Sbjct: 94  LNKVSELIHKSQDHSDCVSARVSVYFQEI 122


>gi|120405388|ref|YP_955217.1| hypothetical protein Mvan_4435 [Mycobacterium vanbaalenii PYR-1]
 gi|119958206|gb|ABM15211.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
          Length = 885

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R      + F D    +  G N  GK+++LEA+  L
Sbjct: 1  MKLHRLALTNYRGITHRDIEFPDRGVVVVSGPNEAGKSSMLEALDLL 47


>gi|167521305|ref|XP_001744991.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776605|gb|EDQ90224.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1214

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 18/146 (12%)

Query: 8   KFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62
           + + I  F++YA   +   FD       G NG GK+NIL+AI F   +S     R  +  
Sbjct: 2   QEIIIDGFKSYAHRTVVPDFDPLFNAITGLNGSGKSNILDAICFVLGISNLSQVRAGNLQ 61

Query: 63  DVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           D+  + G          +            G E   +I+I  +       +   IN    
Sbjct: 62  DLVYKQGQAGVNRASVTIVFDNSDKAQSPVGYEAHDEITICRQIIIGGRNKYF-INGHNA 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL 136
           +     N    +   V +   +    
Sbjct: 121 QPQRVQNLFHSVQLNVNNPHFLIMQG 146


>gi|120610938|ref|YP_970616.1| hypothetical protein Aave_2264 [Acidovorax citrulli AAC00-1]
 gi|120589402|gb|ABM32842.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
          Length = 385

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  L +  +RN+ +L +   ++ +  +G N  GK+N+L+   FL
Sbjct: 1  MLITRLKLKNWRNFKNLDIPLRSR-SYIIGANASGKSNLLDVFRFL 45


>gi|32474054|ref|NP_867048.1| chromosome partition protein Smc [Rhodopirellula baltica SH 1]
 gi|32444591|emb|CAD74592.1| chromosome partition protein Smc [Rhodopirellula baltica SH 1]
          Length = 1234

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62
           +K L ++ F+++A   R  F    T+ VG NG GK+NI++A+   L     +  R    +
Sbjct: 44  LKALELAGFKSFADRTRFDFPDGITVVVGPNGSGKSNIVDAMKWVLGSQSAKSLRGKDMS 103

Query: 63  DVTRIGSP 70
           DV   GS 
Sbjct: 104 DVIFKGSQ 111


>gi|19114172|ref|NP_593260.1| mitotic cohesin complex subunit Psm3 [Schizosaccharomyces pombe
          972h-]
 gi|29427564|sp|O42649|SMC3_SCHPO RecName: Full=Structural maintenance of chromosomes protein 3;
          AltName: Full=Cohesin complex Psm3 subunit
 gi|2661614|emb|CAA15722.1| mitotic cohesin complex subunit Psm3 [Schizosaccharomyces pombe]
          Length = 1194

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
          + I  + I  F++Y    +       H + VG NG GK+N   AI   LS          
Sbjct: 1  MYITKIVIQGFKSYKDYTVIEPLSPHHNVIVGRNGSGKSNFFAAIRFVLSDAYTHLSREE 60

Query: 62 ADVTRIGSPSFFSTFARVEGMEGLAD 87
                  P      A VE     AD
Sbjct: 61 RQALLHEGPGATVMSAYVEVTFANAD 86



 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 70/198 (35%), Gaps = 19/198 (9%)

Query: 157  RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
            +    F    + R+ LL           SI    +EL   ++  + E I      + +  
Sbjct: 973  KAYEQFNNFTKQRDSLLARREELRRSQESI----SELTTVLDQRKDEAIERTFKQVAKSF 1028

Query: 217  QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
             +     +       +  +  +   +++++ +  +    +  S+   T I      + V 
Sbjct: 1029 SEIFVKLVPAGRGELVMNRRSELSQSIEQDISMDIDTPSQKSSIDNYTGIS-----IRVS 1083

Query: 277  YCDKAIT---IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            +  K      I   S G++ +  + +  A           AP  +LDE  A+LD   R+A
Sbjct: 1084 FNSKDDEQLNINQLSGGQKSLCALTLIFA-----IQRCDPAPFNILDECDANLDAQYRSA 1138

Query: 334  LFRIVTDIG--SQIFMTG 349
            +  +V ++   SQ   T 
Sbjct: 1139 IAAMVKEMSKTSQFICTT 1156


>gi|327538714|gb|EGF25364.1| chromosome partition protein Smc [Rhodopirellula baltica WH47]
          Length = 1192

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 7  IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62
          +K L ++ F+++A   R  F    T+ VG NG GK+NI++A+   L     +  R    +
Sbjct: 2  LKALELAGFKSFADRTRFDFPDGITVVVGPNGSGKSNIVDAMKWVLGSQSAKSLRGKDMS 61

Query: 63 DVTRIGSP 70
          DV   GS 
Sbjct: 62 DVIFKGSQ 69


>gi|325283158|ref|YP_004255699.1| DNA repair protein RecN [Deinococcus proteolyticus MRP]
 gi|324314967|gb|ADY26082.1| DNA repair protein RecN [Deinococcus proteolyticus MRP]
          Length = 554

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 12/114 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +       +L L      ++F G+ G GK+ I++A+  L    G R      + R
Sbjct: 11  LTRLEVQSLATIETLDLELSGGLSVFTGETGAGKSIIVDALGLLL---GERAKPD--LIR 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVDELNKH 119
            G      T   V+G E           R  R  R + ++N  V+  V EL+  
Sbjct: 66  RGEEQLLVTGFWVQGGEEAIS-----SRRVSRQGRSVARLNGEVV-AVRELSGW 113


>gi|301620363|ref|XP_002939544.1| PREDICTED: structural maintenance of chromosomes protein 3 [Xenopus
           (Silurana) tropicalis]
          Length = 1217

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 83/266 (31%), Gaps = 41/266 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM 257
            D         +   Y ++L + R  
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAK 238



 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 96/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E ME +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 908  EKEHMEAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 965

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 966  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1025

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1026 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSAEGERGSGAHS 1085

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST---GEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K   +        G++ +V + +  A          
Sbjct: 1086 SVPSVDQFTGVG-----IRVSFTGKQAEMREMQQLSGGQKSLVALALIFA-----IQKCD 1135

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++ S  Q   T     + +S
Sbjct: 1136 PAPFYLFDEIDQALDAQHRKAVSDMIMELASHAQFITTTFRPELLES 1182


>gi|300916212|ref|ZP_07132962.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300416448|gb|EFJ99758.1| conserved hypothetical protein [Escherichia coli MS 115-1]
          Length = 608

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++++ L +  FR Y +   ++ D   T  VG N  GK+ +LEA++  
Sbjct: 1  MRLRKLKLKNFRGYKNSTEIIIDESMTGIVGRNDFGKSTLLEALAIF 47


>gi|327197619|ref|YP_004301310.1| gp34 [Brochothrix phage NF5]
 gi|296245442|gb|ADH03056.1| gp34 [Brochothrix phage NF5]
          Length = 660

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          K+K L +  F+    L + FD    I  G NG GKT +++A  +L  G+
Sbjct: 5  KLKSLELENFKGVKELLINFDDNTQIL-GANGSGKTTVVDAFYWLFYGK 52


>gi|295090874|emb|CBK76981.1| DNA replication and repair protein RecN [Clostridium cf.
           saccharolyticum K10]
          Length = 562

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 80/271 (29%), Gaps = 33/271 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++       S  + F+    I  G+ G GK+ I+ +++    G+     +  ++ R
Sbjct: 2   LFHLSVRNLALIDSAEVEFEEGLNILTGETGAGKSVIIGSVNVALGGK-----ASKELIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL------------QINDVVI--RV 112
            G    +         E   +   K E   D     +            +IND  +    
Sbjct: 57  QGCDYAYVELVFSVTDEKKREELRKKEVFPDTDGNLIISKKIMPARSISRINDETVTAAR 116

Query: 113 VDELNKHL---------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + E+   L         +          I       R   L +        +       E
Sbjct: 117 LREITGILIDIHGQHEHQSLLYHSKHLEILDEYGKSRIEPLKKKTAEAYQEYVAVKKKME 176

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMIN--ALSSLIMEYVQKE 219
               G+ +LL E  F       IE      G   ++        N   ++  + E  +  
Sbjct: 177 YYQSGKEQLLREADFLRFEIEEIENAGLRAGEEEELESRYRRFSNSRRIAESLSEAYRAV 236

Query: 220 NFPHIKLSLTGFL-DGKFDQSFCALKEEYAK 249
           +   I  +L       +FD+    ++++   
Sbjct: 237 SGDQIARALKAVETASQFDEGLSEIRDQLYD 267


>gi|291566851|dbj|BAI89123.1| ABC transporter ATP-binding protein [Arthrospira platensis
          NIES-39]
          Length = 382

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  + +  +RN+ ++ +    +    VG N  GK+N L+A  FL
Sbjct: 1  MIISHIILKNWRNFRAVEVDLCDRI-FIVGPNACGKSNFLDAFRFL 45


>gi|237744820|ref|ZP_04575301.1| chromosome partition protein smc [Fusobacterium sp. 7_1]
 gi|229432049|gb|EEO42261.1| chromosome partition protein smc [Fusobacterium sp. 7_1]
          Length = 1183

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           + +K + I+ F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++      
Sbjct: 1   MYLKAVEINGFKSFGDKVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60

Query: 63  --DVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G      +T A V  +   +D  + L+    +  R + I+  
Sbjct: 61  SQDVIFSGGKEKKPATKAEVSLIIDNSDRYLDLDNNTVKITRRIHISGE 109


>gi|41052609|dbj|BAD08001.1| putative SMC3 protein [Oryza sativa Japonica Group]
          Length = 1205

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 14/143 (9%)

Query: 5   IKIKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRAS 60
           + IK + I  F++Y    +    F  +  + VG NG GK+N   AI   LS      R+ 
Sbjct: 1   MYIKKVVIEGFKSYRE-EISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSE 59

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL---N 117
                           A VE +   +D  I ++  +      +++   V    DE     
Sbjct: 60  DRGALLHEGAGHSVVSAFVEIVFDNSDNRIPVDKEE------VRLRRTVASKKDEYYLDG 113

Query: 118 KHLRISWLVPSMDRIFSGLSMER 140
           KH+ + +    +  +       R
Sbjct: 114 KHVSMLFSKTEVMNLLESAGFSR 136



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 68/210 (32%), Gaps = 16/210 (7%)

Query: 144  LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
             +  +      +++ +  +      R +L        +   + + ++ EL   ++  + E
Sbjct: 963  CNEQLQQFSHVNKKALDQYVNFTEQREQLQRR----RAELDAGDQKIRELISVLDQRKDE 1018

Query: 204  MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
             I      +  + ++     ++    G       +      ++        R+ D   R 
Sbjct: 1019 SIERTFKGVARHFREVFSELVQ---GGHGHLVMMRKKDGDADDDDNDEDGPREPDPEGRI 1075

Query: 264  TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
                  +  +      +  ++   S G++ VV + +  A           AP  L DEI 
Sbjct: 1076 EKYIGVKVKVSFTGKGETQSMKQLSGGQKTVVALTLIFA-----IQRCDPAPFYLFDEID 1130

Query: 324  AHLDEDKRNALFRIVTDI----GSQIFMTG 349
            A LD   R A+  ++  +     +Q   T 
Sbjct: 1131 AALDPQYRTAVGNMIRRLADMADTQFIATT 1160


>gi|260494618|ref|ZP_05814748.1| chromosome segregation protein SMC [Fusobacterium sp. 3_1_33]
 gi|260197780|gb|EEW95297.1| chromosome segregation protein SMC [Fusobacterium sp. 3_1_33]
          Length = 1183

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           + +K + I+ F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++      
Sbjct: 1   MYLKAVEINGFKSFGDKVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60

Query: 63  --DVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G      +T A V  +    D  + L+    +  R + I+  
Sbjct: 61  SQDVIFSGGKEKKPATKAEVSLIIDNTDRYLDLDNNTVKITRRIHISGE 109


>gi|196014309|ref|XP_002117014.1| hypothetical protein TRIADDRAFT_31729 [Trichoplax adhaerens]
 gi|190580505|gb|EDV20588.1| hypothetical protein TRIADDRAFT_31729 [Trichoplax adhaerens]
          Length = 248

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYAD 63
          ++ + +  F  + +L++ F       +G+NG GK+ I+  I     GR     R  S   
Sbjct: 5  LQQIQLINFMCHKNLKITFGKNVNFIIGNNGSGKSAIMVGIIVGLGGRSRLTNRATSMKG 64

Query: 64 VTRIGS 69
          + + GS
Sbjct: 65 LIKKGS 70


>gi|149174335|ref|ZP_01852962.1| hypothetical protein PM8797T_03274 [Planctomyces maris DSM 8797]
 gi|148846880|gb|EDL61216.1| hypothetical protein PM8797T_03274 [Planctomyces maris DSM 8797]
          Length = 661

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 5  IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPG-RGFR 57
          +++    I+ FR+     +   D + T  VG N  GKT IL+A+  ++P     R
Sbjct: 1  MQLISAQITNFRSITDSGIFSIDPKVTCLVGKNESGKTAILQALEKINPLDSSHR 55


>gi|124506103|ref|XP_001351649.1| chromosome condensation protein, putative [Plasmodium falciparum
           3D7]
 gi|23504577|emb|CAD51456.1| chromosome condensation protein, putative [Plasmodium falciparum
           3D7]
          Length = 1708

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYA 62
           I+ L +  F++Y+ +++   F  + +  VG NG GK+NI++A+ F+     +  R+   +
Sbjct: 65  IEKLVLENFKSYSGVKVIGPFYKKFSCIVGPNGSGKSNIIDAMLFVFGRRAKKIRQNKLS 124

Query: 63  DVTR 66
           D+  
Sbjct: 125 DLIH 128


>gi|28493069|ref|NP_787230.1| recombination and DNA repair protein [Tropheryma whipplei str.
           Twist]
 gi|28476109|gb|AAO44199.1| recombination and DNA repair protein [Tropheryma whipplei str.
           Twist]
          Length = 545

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 12/171 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRG-FRRASYAD 63
           I+ ++I  F N A   + F +  T+  G+ G GKT +L A+  L   PG   +     A 
Sbjct: 2   IEQISIRNFGNIAKADIDFGSDFTVITGETGAGKTMLLGALETLLGKPGNSKYPHNQSAQ 61

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           V        +      E +    +  + +      S + +   +        L K     
Sbjct: 62  VI-----GIWRVPRHFENVLPCIEGKLTVSREISLSGKSVANVNGKTANNSYLGKLRNKL 116

Query: 124 WLVPSMDRIFS-GLSMERRRFLDRMVFAID--PRHRRRMIDFERL-MRGRN 170
            +V              +R+ LD      D    ++    +  +  +  RN
Sbjct: 117 LVVHGQFAQVRLKNPALQRQILDGYAGNTDLLKEYQLAWSELSKTNLELRN 167


>gi|323947332|gb|EGB43338.1| hypothetical protein EREG_01069 [Escherichia coli H120]
          Length = 606

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-------SPGRGFR 57
          +K+  ++I  FR  +S  +  +   T  +G N +GK+ IL+AI  L       S    FR
Sbjct: 1  MKLVRIDIQNFRGISSASINLE-NFTTLIGSNNIGKSTILKAIKILVDTTNPTSEDWPFR 59

Query: 58 RASYADVT 65
            S  ++ 
Sbjct: 60 TPSNEEMI 67


>gi|262091738|gb|ACY25327.1| DNA repair protein RecN [uncultured actinobacterium]
          Length = 538

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 81/261 (31%), Gaps = 55/261 (21%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + I+ L + +     +L L          G+ G GKT I+EAI+ L  GR     +
Sbjct: 1   MLTELHIENLGVID-----TLDLQLSEGLVALTGETGAGKTMIVEAINLLVGGR-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            A + R G+       ARVEG     D  + L        R     +  +  V +L +H 
Sbjct: 51  DAGMVRPGATE-----ARVEGRFVFGDEEVILCRTIPLDGRSRAYVNGRLATVGQLAEHG 105

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                                  LD +       H+  +         R  L      D 
Sbjct: 106 -----------------------LDLVDMHGQHAHQSLLG----AKAQREALDAYAKVDL 138

Query: 181 SWCS-------SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
                       I+A +A LG   +  R   I+ L   + E ++       +  L     
Sbjct: 139 EPLRNARAVVTEIDAALATLGGD-DRMRAREIDLLRFQVNEIIEAALQGADEDELLS--- 194

Query: 234 GKFDQSFCALKEEYAKKLFDG 254
              ++   A    Y + L+  
Sbjct: 195 --REEDVLADAVNYREALWKA 213


>gi|262282929|ref|ZP_06060696.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
 gi|262261181|gb|EEY79880.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
          Length = 879

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++K + I  FRN+  + +  F    TIF+GDNG GK+++ +AI +   G
Sbjct: 4  RLKQVIIKNFRNFQGTHQFDFSKDVTIFLGDNGNGKSSVFDAIQWCLTG 52


>gi|254820147|ref|ZP_05225148.1| hypothetical protein MintA_09481 [Mycobacterium intracellulare
          ATCC 13950]
          Length = 246

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R  +   + F D    +  G N +GK++++EA+  L
Sbjct: 1  MKLHRLILTNYRGISHREIEFPDHGVVVVCGANEIGKSSMIEALDLL 47


>gi|255074335|ref|XP_002500842.1| condensin complex component [Micromonas sp. RCC299]
 gi|226516105|gb|ACO62100.1| condensin complex component [Micromonas sp. RCC299]
          Length = 1259

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
            R+ IK + +  F++YA  +    F    +  VG NG GK+N+++A+ F+     +  R 
Sbjct: 13  PRLVIKKMVLENFKSYAGAQHVGPFHKSFSSVVGPNGSGKSNVIDAMLFVFGKRAKQLRL 72

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLA 86
              +++    +      +ARVE      
Sbjct: 73  NKVSELIHNSTDFRNLEYARVEVHFHQI 100


>gi|298492160|ref|YP_003722337.1| DNA repair protein RecN ['Nostoc azollae' 0708]
 gi|298234078|gb|ADI65214.1| DNA repair protein RecN ['Nostoc azollae' 0708]
          Length = 575

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 78/252 (30%), Gaps = 25/252 (9%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I  F     L L F A   +  G+ G GK+ IL+AI  +  G+       + V R G+
Sbjct: 5   LRIENFALIDQLELDFGAGLNVLTGETGAGKSIILDAIDGVLGGK-----VSSRVIRTGT 59

Query: 70  PSFFS---------TFARVEGME------GLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                           A +   E          IS ++           ++N V++    
Sbjct: 60  SRALVEGTFSINPFLAAWLSEQEIDLIDDNAVVISREIAATASNIRSRSRVNGVLVNRQI 119

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLD----RMVFAIDPRHRRRMIDFERLMRGRN 170
             +   R+  +      +  G S + R +LD      +     +       +++  +   
Sbjct: 120 MGSLRDRLVEITAQGQTVQVGQSAQVRDWLDVYGGDSLIQQRQKVAVAFSAYQQAHQTSE 179

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
           +  T           I  Q+ EL         E I  L+  +       +   +   +  
Sbjct: 180 KRRTSERERLQQFDLITYQVQELSAANLNYPQE-IEQLTQEMQRLNHVVDLQQMSYKVYQ 238

Query: 231 FLDGKFDQSFCA 242
            L    D++  A
Sbjct: 239 ALYQNEDETPTA 250


>gi|162455460|ref|YP_001617827.1| hypothetical protein sce7178 [Sorangium cellulosum 'So ce 56']
 gi|161166042|emb|CAN97347.1| hypothetical protein sce7178 [Sorangium cellulosum 'So ce 56']
          Length = 362

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ L+++ +R+   L L   AQ  + VG NGVGKTN+   +  L     
Sbjct: 1  MTVQELHVAGYRSIRELTLPL-AQVNVIVGPNGVGKTNLYRTMVLLGSAAS 50


>gi|126666549|ref|ZP_01737527.1| predicted ATPase [Marinobacter sp. ELB17]
 gi|126628937|gb|EAZ99556.1| predicted ATPase [Marinobacter sp. ELB17]
          Length = 387

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 5  IKIKFLNISEFRNYASL--RLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK + ++ F +Y S    +   +   I +G NG GK+N++EAI  +
Sbjct: 1  MLIKSIRLTNFLSYGSSADEIELRS-LNIIIGPNGSGKSNLIEAIELI 47


>gi|29336525|sp|P97690|SMC3_RAT RecName: Full=Structural maintenance of chromosomes protein 3;
           Short=SMC protein 3; Short=SMC-3; AltName: Full=Basement
           membrane-associated chondroitin proteoglycan;
           Short=Bamacan; AltName: Full=Chondroitin sulfate
           proteoglycan 6; AltName: Full=Chromosome segregation
           protein SmcD
 gi|1785540|gb|AAB96342.1| basement membrane-associated chondroitin proteoglycan Bamacan
           [Rattus norvegicus]
          Length = 1191

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 103/293 (35%), Gaps = 21/293 (7%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 908  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 965

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 966  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1025

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSL---TGFLDGKFDQSFCALKEEYAKKLFDG 254
              A       +S    E  QK   P  K +L    G ++G   Q       E  +     
Sbjct: 1026 YEAIQLTFKQVSKNFSEVFQKL-VPGAKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQ 1084

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
              + S+ + T +G     + V +  K      +   S G++ +V + +  A         
Sbjct: 1085 SSVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKC 1134

Query: 312  GFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETA 362
              AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S ++++
Sbjct: 1135 DPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLESADKSS 1187


>gi|116049471|ref|YP_791726.1| putative chromosome segregation protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584692|gb|ABJ10707.1| putative chromosome segregation protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 1162

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 95/290 (32%), Gaps = 35/290 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   GS +    + A +E +   A+            I +  R  R       +N  
Sbjct: 61  MTDVIFNGSNTRKPVSQASIELIFDNAETTLVGEYAQYAEISIRRRVSRDGQNTYFLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               + R F++             +
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEARPEDLRNFIEE---------AAGI 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             ++   R     +     + +  + +  ++     +++               E   K 
Sbjct: 171 SKYKERRRETESRIRRTQENLARLTDLREELGRQLERLHRQAQSAEKYQEHKAEERQLKA 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
               ++        G+ ++     +  +   + + R  D+   R   G H
Sbjct: 231 QLGAVRWRDLNEQVGQRERVIGDQEIAFEALVAEQRGADAGIERLRDGHH 280


>gi|332667919|ref|YP_004450707.1| chromosome segregation protein SMC [Haliscomenobacter hydrossis
          DSM 1100]
 gi|332336733|gb|AEE53834.1| chromosome segregation protein SMC [Haliscomenobacter hydrossis
          DSM 1100]
          Length = 1185

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +++K L I  F+++A+   + F A     VG NG GK+N+++AI ++   +  R      
Sbjct: 1  MRLKSLEIKGFKSFANSTVINFGADVIGIVGPNGSGKSNVVDAIRWVLGEQSSRELRLDQ 60

Query: 64 V 64
          +
Sbjct: 61 M 61


>gi|260101427|ref|ZP_05751664.1| DNA repair protein RecN [Lactobacillus helveticus DSM 20075]
 gi|260084767|gb|EEW68887.1| DNA repair protein RecN [Lactobacillus helveticus DSM 20075]
          Length = 560

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 72/195 (36%), Gaps = 29/195 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L++ F  + T+ +G+ G GK+ I++A+S L   R        ++ R
Sbjct: 2   LVELDIKNFAIIKNLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGSRS-----QKEMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F      E +A++  K     D            +    ++IN     I
Sbjct: 57  SGEQKAVITGLFVLDNQKEKIAELCEKYGLPHDDDQLVISRELAIKGRNIVRINGQLTTI 116

Query: 111 RVVDELNKHL-------RISWLVPSMDRIFSGLSMERRRFL-DRMVFAIDPRHRRRMIDF 162
            V+ E+  +L           L+    +I          F  +   +  D RH +++ + 
Sbjct: 117 NVLREIGNYLVDIHGQHDQQILMDQDRQIDLVDDYAPDSFKEELSAYQEDYRHWQKLTNQ 176

Query: 163 ERLMRGRNRLLTEGY 177
            R +R   + L +  
Sbjct: 177 LRHLRQDAQELAQKQ 191


>gi|262044379|ref|ZP_06017442.1| SMC family protein [Klebsiella pneumoniae subsp. rhinoscleromatis
          ATCC 13884]
 gi|259038267|gb|EEW39475.1| SMC family protein [Klebsiella pneumoniae subsp. rhinoscleromatis
          ATCC 13884]
          Length = 362

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I+++ I  FR+   + L       I  G NG GK+NI  AI  L+
Sbjct: 2  IQYIRIQNFRSVKDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 45


>gi|255971438|ref|ZP_05422024.1| DNA repair protein RecN [Enterococcus faecalis T1]
 gi|256960166|ref|ZP_05564337.1| DNA repair protein RecN [Enterococcus faecalis Merz96]
 gi|256962591|ref|ZP_05566762.1| DNA repair protein RecN [Enterococcus faecalis HIP11704]
 gi|257083895|ref|ZP_05578256.1| DNA repair protein RecN [Enterococcus faecalis Fly1]
 gi|257421233|ref|ZP_05598223.1| DNA repair protein recN [Enterococcus faecalis X98]
 gi|255962456|gb|EET94932.1| DNA repair protein RecN [Enterococcus faecalis T1]
 gi|256950662|gb|EEU67294.1| DNA repair protein RecN [Enterococcus faecalis Merz96]
 gi|256953087|gb|EEU69719.1| DNA repair protein RecN [Enterococcus faecalis HIP11704]
 gi|256991925|gb|EEU79227.1| DNA repair protein RecN [Enterococcus faecalis Fly1]
 gi|257163057|gb|EEU93017.1| DNA repair protein recN [Enterococcus faecalis X98]
          Length = 560

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 98/266 (36%), Gaps = 33/266 (12%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N++ ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +
Sbjct: 2   NKM-LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SS 55

Query: 63  DVTRIGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQIND 107
           D  R G+        FS     E  + L ++ I+ E          +   ++V  +    
Sbjct: 56  DYIRQGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRI 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDF 162
           V I  +  + ++L           +      ER       F  + + A+  ++ +   ++
Sbjct: 116 VNITNLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEY 172

Query: 163 ERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             L   +R R +   E             ++A     +     +++   + L       +
Sbjct: 173 RALEAKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIAD 231

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKE 245
                  +L G  D   D+   ++ E
Sbjct: 232 ALTISYAALNGEDDSSLDKIGTSMNE 257


>gi|194447626|ref|YP_002048349.1| hypothetical protein SeHA_C4715 [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
 gi|194405930|gb|ACF66149.1| conserved hypothetical protein [Salmonella enterica subsp.
          enterica serovar Heidelberg str. SL476]
          Length = 255

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L +  FR+      + F +  T+ +G N  GKT IL A+ +L
Sbjct: 1  MKLTKLVLENFRSVRERQEIDFAS-VTLLLGPNSAGKTTILIALFYL 46


>gi|134080608|emb|CAK41274.1| unnamed protein product [Aspergillus niger]
          Length = 1407

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 3/114 (2%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + +++F  Y S       +  + +G NG GK+ ++ AI   L  G     R     
Sbjct: 287 AIVRIRVTDFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDTG 346

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           +  + G                  +  +    + D +     IN         L
Sbjct: 347 EFVKHGCREATIEIELAGKPGSRHNPVVSRTIKRDGNKSTFTINGKQASRSQVL 400


>gi|27805841|ref|NP_776720.1| structural maintenance of chromosomes protein 3 [Bos taurus]
 gi|29336596|sp|O97594|SMC3_BOVIN RecName: Full=Structural maintenance of chromosomes protein 3;
           Short=SMC protein 3; Short=SMC-3; AltName:
           Full=Chondroitin sulfate proteoglycan 6
 gi|4235255|gb|AAD13142.1| SMC3 protein [Bos taurus]
          Length = 1218

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQI 345
            S G++ +V + +  A           AP  L DEI   LD   R A+  ++ ++   +Q 
Sbjct: 1117 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQF 1171

Query: 346  FMTGTDKSVFDS 357
              T     + +S
Sbjct: 1172 ITTTFRPELLES 1183


>gi|28897422|ref|NP_797027.1| recombination and repair protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837741|ref|ZP_01990408.1| DNA repair protein RecN [Vibrio parahaemolyticus AQ3810]
 gi|260363512|ref|ZP_05776341.1| DNA repair protein RecN [Vibrio parahaemolyticus K5030]
 gi|260876385|ref|ZP_05888740.1| DNA repair protein RecN [Vibrio parahaemolyticus AN-5034]
 gi|260898656|ref|ZP_05907152.1| DNA repair protein RecN [Vibrio parahaemolyticus Peru-466]
 gi|260899250|ref|ZP_05907645.1| DNA repair protein RecN [Vibrio parahaemolyticus AQ4037]
 gi|28805634|dbj|BAC58911.1| DNA repair protein RecN [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748936|gb|EDM59767.1| DNA repair protein RecN [Vibrio parahaemolyticus AQ3810]
 gi|308086965|gb|EFO36660.1| DNA repair protein RecN [Vibrio parahaemolyticus Peru-466]
 gi|308092942|gb|EFO42637.1| DNA repair protein RecN [Vibrio parahaemolyticus AN-5034]
 gi|308106614|gb|EFO44154.1| DNA repair protein RecN [Vibrio parahaemolyticus AQ4037]
 gi|308113013|gb|EFO50553.1| DNA repair protein RecN [Vibrio parahaemolyticus K5030]
 gi|328472565|gb|EGF43428.1| recombination and repair protein [Vibrio parahaemolyticus 10329]
          Length = 554

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----ADAGMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  + L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFLLDNNLHATRWLEDNDLLDGTECILRRIITKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+    ++         +     +  ++
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMK--SEYQMAMLDQYAGHLNLLKSTRSAYQHWRQADNNLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
                  +             ++ EL 
Sbjct: 175 QLKENSQQNQAQKQLLEYQIKELNELS 201


>gi|300123341|emb|CBK24614.2| unnamed protein product [Blastocystis hominis]
          Length = 164

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 46/166 (27%), Gaps = 27/166 (16%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL--------EAISFLSPGRGFRRASYADV 64
             F  +         +  I +G NG GK+ I         E +  LS     R     + 
Sbjct: 2   ENFMTFRHCVFNASPRLNIILGQNGSGKSTISCAVCIVLGEDLRLLS-----RGNKLEEY 56

Query: 65  TRIGSPSF-------FSTFARVEGMEGLADISIKLETRDDRS-----VRCLQINDVVIRV 112
            R G           F    ++      +DI I++      +      + ++ + +    
Sbjct: 57  IRYGEKQARVKVGYMFCLIKQILLRGENSDIEIEVRIHKGSADYYLNGKNIKKDKLKSLR 116

Query: 113 VDELNKHLRISWLVPSM--DRIFSGLSMERRRFLDRMVFAIDPRHR 156
                    +   +P        +    +R    +R V   +  H 
Sbjct: 117 RALKIDLSNLCQFLPQDRVSDFVNQSPQDRLFEFERSVGGEESVHA 162


>gi|239995020|ref|ZP_04715544.1| Chromosome segregation ATPase, sms [Alteromonas macleodii ATCC
           27126]
          Length = 1175

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/237 (17%), Positives = 82/237 (34%), Gaps = 41/237 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F  + T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLKKIKLAGFKSFVEPTTIPFLGEMTAIVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   GS S            F ++  R+ G     +           +     +N  
Sbjct: 61  MTDVIFNGSSSRKPVGQCSVELVFDNSAGRIAGEFANYNELSVKRLVTRDATSTYFLNGT 120

Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRFL 144
             R  D                  E     R+    P   R+F   +       ERRR  
Sbjct: 121 KCRRRDVTDLFLGTGLGPRSYAIIEQGMISRLIESKPQDLRVFIEEAAGISKYKERRRET 180

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
           +  +         R+ D    +  +   L      ++   ++ AQ  EL  ++   R
Sbjct: 181 ENRIRHTQDN-LERLNDVRDELGKQLEKLQRQAAAATRYKTLRAQARELKGQLAALR 236



 Score = 37.2 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A  RL       AP  LLDE+ A LD+        +
Sbjct: 1068 GKKNSTIHLLSGGEKALTALSLVFAIFRL-----NPAPFCLLDEVDAPLDDANVGRFCNL 1122

Query: 338  VTDIGSQI-FM 347
            V+++   + F+
Sbjct: 1123 VSEMSQTVQFI 1133


>gi|190341501|gb|ACE74827.1| RecN [Enterobacter asburiae]
          Length = 553

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 31/207 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGSPS-------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
           +G+                   +     +E   +  ++     D   R   IN   V + 
Sbjct: 57  MGANRADLCARFSLKDTPAAQRWLEQNQLEDGRECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +  ++      +++  LD       +  +   H R+     R +
Sbjct: 116 QLRELGQLLIQIHGQHAHQQLVK--PEQQKALLDGYAGEYALTQLMAEHYRQWHQSCREL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               +   E    +   +    Q+ EL
Sbjct: 174 AQHQQQSQERAARAELLAY---QLKEL 197


>gi|170104320|ref|XP_001883374.1| condensin complex subunit SMC2 [Laccaria bicolor S238N-H82]
 gi|164641827|gb|EDR06086.1| condensin complex subunit SMC2 [Laccaria bicolor S238N-H82]
          Length = 1206

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYA-SLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          ++I+ L I  F++Y     +  +D       G NG GK+NIL+AI F   ++     R A
Sbjct: 1  MRIEELVIEGFKSYPVRTTITGWDPSFNAITGLNGSGKSNILDAICFVLGITNMSQMRAA 60

Query: 60 SYADVT 65
          +  D+ 
Sbjct: 61 NQQDLI 66


>gi|86137244|ref|ZP_01055822.1| SMC protein [Roseobacter sp. MED193]
 gi|85826568|gb|EAQ46765.1| SMC protein [Roseobacter sp. MED193]
          Length = 1151

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 95/263 (36%), Gaps = 33/263 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+ ++   +  +  R   
Sbjct: 1   MRFSKLRLNGFKSFVDPTDLIIGDGLTGVVGPNGCGKSNLLEALRWVMGETRAKAMRGGG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G     + +F      ++  + LA         +++  R  R V    + N  
Sbjct: 61  MEDVIFAGTTSRSARNFAEVNLLIDNSDRLAPSGFNEADQLEIVRRITRDVGSAYKSNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKARRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-RVEMIN---ALSSLIMEYV 216
             E  ++ +N        D      +  Q+ +L  +   A R   I     ++  ++ Y 
Sbjct: 177 RHEAELKLKNTEQNLLRVDDV-VEQLAGQLGQLARQARQAQRYRDIGEKLRMAEGMLLYR 235

Query: 217 QKENFPHIKLSLTGFLDGKFDQS 239
           +       +LS    L  +  Q+
Sbjct: 236 RWREADDARLSAEQDLSIRLTQA 258


>gi|110637995|ref|YP_678202.1| chromosome segregation protein, Smc family protein [Cytophaga
          hutchinsonii ATCC 33406]
 gi|28375463|emb|CAD66595.1| SMC protein [Cytophaga hutchinsonii]
 gi|110280676|gb|ABG58862.1| chromosome segregation protein, Smc family protein [Cytophaga
          hutchinsonii ATCC 33406]
          Length = 1178

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60
          +++  L I  F+++   + + FD   T  VG NG GK+N+++AI ++      R  R   
Sbjct: 1  MQLSKLEIKGFKSFGDKVVINFDEGITGIVGPNGCGKSNVVDAIRWVLGEQKTRALRSDK 60

Query: 61 YADVTRIGSPS 71
            +V   G+ +
Sbjct: 61 MENVIFNGTKN 71


>gi|238793802|ref|ZP_04637423.1| hypothetical protein yinte0001_7040 [Yersinia intermedia ATCC
           29909]
 gi|238726866|gb|EEQ18399.1| hypothetical protein yinte0001_7040 [Yersinia intermedia ATCC
           29909]
          Length = 393

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 5/113 (4%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ ++I +        + FD    I  G NG+GKT IL++++       F   +   +
Sbjct: 1   MKIQKIDIKDIGGIKRAIIDFDEYMNIICGPNGIGKTTILDSVAH-----SFISTNSNVL 55

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
            R    +       +   + + + +I  E  D      +       R V  LN
Sbjct: 56  KRHAQSTNGQINIVLNDCDSIKESNISFEKFDPEDHSYINGLGQAGRKVIYLN 108


>gi|194367339|ref|YP_002029949.1| OLD family ATP-dependent endonuclease-like protein
           [Stenotrophomonas maltophilia R551-3]
 gi|194350143|gb|ACF53266.1| OLD family ATP-dependent endonuclease-like protein
           [Stenotrophomonas maltophilia R551-3]
          Length = 604

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 68/409 (16%), Positives = 132/409 (32%), Gaps = 81/409 (19%)

Query: 4   RIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           R+    L I  FR     ++ +  D    + VG N  GK++IL A   L    G +    
Sbjct: 24  RMH--KLVIRNFRAIGRQAVEIELDD-IVVLVGANNTGKSSILRA-YQLVMESGAKG--- 76

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            D+     P  + T A ++  +     SI+LET      +      + +R   + +   R
Sbjct: 77  -DLLAEDFPGGYVTGAELKDEDMP---SIELETVLFADSKPPADKWIDVRPNGDRHVRER 132

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR---------------HR---------- 156
            +W  P       G   +R   ++   +  +                 HR          
Sbjct: 133 WTWCCP-------GKPKKRGFNVELNAWDANHGPWGTASVAQSNRPEMHRIEAFDDPKKQ 185

Query: 157 --RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
               +   E   + R + L E        + + A +AEL   +    +E I+ +   ++ 
Sbjct: 186 ADSIISLLEEATKQRVKALIEEEGKEGAYAKLLAGVAELQKAVATEAMEAIDEVRLELVR 245

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL--FDGRKMDSMSRRTLIGPHRSD 272
            +    FP   ++L    +    +S    K     ++   DG + D   +          
Sbjct: 246 AMADV-FPGYSITLDARPEDDLSRSISFFKAPPVLRMGPADGHQSDLERQ---------- 294

Query: 273 LIVDYCDKAITIAHGSTGEQKVVL-VGIF-LAHARLISNTTGFAPILLLDEISAHLDEDK 330
                         GS G ++ ++   +  +A  +  +  T    +LLLDE    L    
Sbjct: 295 --------------GS-GARRTLMWNALRIIADHKAGAKGTERPHVLLLDEPELCLHPAA 339

Query: 331 RNALFRIVTDIGS----QIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
                 ++  +      Q+ +T    +  D        +R+   QA  +
Sbjct: 340 VRDACNVLYSLPGGKTWQVMVTTHSPAFIDLSRNNTSIVRVERSQAGTV 388


>gi|152985977|ref|YP_001349160.1| chromosome segregation protein SMC [Pseudomonas aeruginosa PA7]
 gi|150961135|gb|ABR83160.1| chromosome segregation protein SMC [Pseudomonas aeruginosa PA7]
          Length = 1162

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 95/290 (32%), Gaps = 35/290 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   GS +    + A +E +   A+            I +  R  R       +N  
Sbjct: 61  MTDVIFNGSNTRKPVSQASIELIFDNAETTLVGEYARYAEISIRRRVSRDGQNTYFLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               + R F++             +
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEARPEDLRNFIEE---------AAGI 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             ++   R     +     + +  + +  ++     +++               E   K 
Sbjct: 171 SKYKERRRETESRIRRTQENLARLTDLREELGRQLERLHRQAQSAEKYQEHKAEERQLKA 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
               ++        G+ ++     +  +   + + R  D+   R   G H
Sbjct: 231 QLGAVRWRDLNEQVGQRERVIGDQEIAFEALVAEQRGADAGIERLRDGHH 280


>gi|15596724|ref|NP_250218.1| hypothetical protein PA1527 [Pseudomonas aeruginosa PAO1]
 gi|9947485|gb|AAG04916.1|AE004581_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 1162

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 95/290 (32%), Gaps = 35/290 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   GS +    + A +E +   A+            I +  R  R       +N  
Sbjct: 61  MTDVIFNGSNTRKPVSQASIELIFDNAETTLVGEYAQYAEISIRRRVSRDGQNTYFLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               + R F++             +
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEARPEDLRNFIEE---------AAGI 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             ++   R     +     + +  + +  ++     +++               E   K 
Sbjct: 171 SKYKERRRETESRIRRTQENLARLTDLREELGRQLERLHRQAQSAEKYQEHKAEERQLKA 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
               ++        G+ ++     +  +   + + R  D+   R   G H
Sbjct: 231 QLGAVRWRDLNEQVGQRERVIGDQEIAFEALVAEQRGADAGIERLRDGHH 280


>gi|218892515|ref|YP_002441384.1| putative chromosome segregation protein [Pseudomonas aeruginosa
           LESB58]
 gi|254234622|ref|ZP_04927945.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126166553|gb|EAZ52064.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|218772743|emb|CAW28528.1| putative chromosome segregation protein [Pseudomonas aeruginosa
           LESB58]
          Length = 1162

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 95/290 (32%), Gaps = 35/290 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   GS +    + A +E +   A+            I +  R  R       +N  
Sbjct: 61  MTDVIFNGSNTRKPVSQASIELIFDNAETTLVGEYAQYAEISIRRRVSRDGQNTYFLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               + R F++             +
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEARPEDLRNFIEE---------AAGI 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             ++   R     +     + +  + +  ++     +++               E   K 
Sbjct: 171 SKYKERRRETESRIRRTQENLARLTDLREELGRQLERLHRQAQSAEKYQEHKAEERQLKA 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
               ++        G+ ++     +  +   + + R  D+   R   G H
Sbjct: 231 QLGAVRWRDLNEQVGQRERVIGDQEIAFEALVAEQRGADAGIERLRDGHH 280


>gi|296472599|gb|DAA14714.1| structural maintenance of chromosomes protein 3 [Bos taurus]
          Length = 1217

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQI 345
            S G++ +V + +  A           AP  L DEI   LD   R A+  ++ ++   +Q 
Sbjct: 1117 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQF 1171

Query: 346  FMTGTDKSVFDS 357
              T     + +S
Sbjct: 1172 ITTTFRPELLES 1183


>gi|294782919|ref|ZP_06748245.1| RecF/RecN/SMC N domain-containing protein [Fusobacterium sp.
           1_1_41FAA]
 gi|294481560|gb|EFG29335.1| RecF/RecN/SMC N domain-containing protein [Fusobacterium sp.
           1_1_41FAA]
          Length = 1183

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           + +K + I+ F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++      
Sbjct: 1   MYLKAVEINGFKSFGEKVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60

Query: 63  --DVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G      +T A V  +   +D  +  +    +  R + I   
Sbjct: 61  SQDVIFSGGKEKKAATKAEVSLIIDNSDRYLDFDNDIVKITRRIHITGE 109


>gi|257052984|ref|YP_003130817.1| ATP-dependent endonuclease of the OLD family- like protein
          [Halorhabdus utahensis DSM 12940]
 gi|256691747|gb|ACV12084.1| ATP-dependent endonuclease of the OLD family- like protein
          [Halorhabdus utahensis DSM 12940]
          Length = 529

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I   ++  ++      L F   + I +G N VGK+++LEAI  L
Sbjct: 1  MRISSFSVRNYKAIKEQTLEFGE-YNIIIGKNDVGKSSVLEAIDLL 45


>gi|255944913|ref|XP_002563224.1| Pc20g06990 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587959|emb|CAP86028.1| Pc20g06990 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1266

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y    + L  DA  T  +G NG GK+N ++AISF+   +    R  + 
Sbjct: 3  KLIRLELFNFKSYKGHHVLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSNNL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|70946723|ref|XP_743047.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56522355|emb|CAH84937.1| hypothetical protein PC301329.00.0 [Plasmodium chabaudi chabaudi]
          Length = 419

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 121/361 (33%), Gaps = 48/361 (13%)

Query: 7   IKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           IK+L +  F++Y    +    ++ T  +G NG GK+NI++ I F+     +  R  +   
Sbjct: 43  IKYLTVCNFKSYEGENIIGPFSKFTAIIGPNGSGKSNIMDCICFVLGIDNKYLRIKNLRK 102

Query: 64  VTRIGSPSFFSTFAR-------VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           +            A+       +        + +K      R V    IND ++   DE 
Sbjct: 103 LIYHKENEKIENIAKRICYVKLIIESNSKETVELKRTLNY-RGVTNFYINDRLVNK-DEY 160

Query: 117 NKHLR----------ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
            + LR                 ++ I +    E  +  + +  + +  + +   D +  +
Sbjct: 161 TQFLRRNRIETKTKTCLIFQGDIEEIINKKPTELSKLFEYISGSNE--YEQIYEDIKERL 218

Query: 167 RGRN----RLLTEGYFDSSWCSSIEAQMAELGV--KINIARVEMINALSSL-IMEYVQKE 219
           + +       L E           + QM E     K+  +    I  L    +  +++K+
Sbjct: 219 KEKQIACKNYLNEKKKIEQEIKIHKMQMNENIEHNKLKESYDNDIKNLYLFRLYHFLKKK 278

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM--------DSMSRRTLIGPHRS 271
           +F   +L++      +F+Q   +  ++ A  L   +          D   +   I  +  
Sbjct: 279 DFFKEQLAIFKDQKMEFEQEVLSKNKDTANDLERKKIEKKKEFLKIDEQIKNKKIILN-- 336

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           DL ++  +             K++           +           +D+++  L+E  +
Sbjct: 337 DLKIEINEIHEKRKFCQDNLNKIIA-------NEKLKQAMQTHCTKFIDDLNERLEEQNK 389

Query: 332 N 332
            
Sbjct: 390 K 390


>gi|313106531|ref|ZP_07792760.1| putative chromosome segregation protein [Pseudomonas aeruginosa
           39016]
 gi|310879262|gb|EFQ37856.1| putative chromosome segregation protein [Pseudomonas aeruginosa
           39016]
          Length = 1162

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 95/290 (32%), Gaps = 35/290 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   GS +    + A +E +   A+            I +  R  R       +N  
Sbjct: 61  MTDVIFNGSNTRKPVSQASIELIFDNAETTLVGEYAQYAEISIRRRVSRDGQNTYFLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               + R F++             +
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEARPEDLRNFIEE---------AAGI 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             ++   R     +     + +  + +  ++     +++               E   K 
Sbjct: 171 SKYKERRRETESRIRRTQENLARLTDLREELGRQLERLHRQAQSAEKYQEHKAEERQLKA 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
               ++        G+ ++     +  +   + + R  D+   R   G H
Sbjct: 231 QLGAVRWRDLNEQVGQRERVIGDQEIAFEALVAEQRGADAGIERLRDGHH 280


>gi|301165454|emb|CBW25025.1| putative DNA repair protein [Bacteriovorax marinus SJ]
          Length = 536

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +++ +K L ++ F  + +  + F     + VG+ G GK+ IL+A+  +     F   +  
Sbjct: 4  DKLNLKSLTLNNFATFVNQEINFTDGFNVIVGETGSGKSLILDALQLV-----FGNRADK 58

Query: 63 DVTRIGSPSFFSTFARV 79
           + R            V
Sbjct: 59 KIIRKNESFATVEAVFV 75


>gi|171184971|ref|YP_001793890.1| SMC domain-containing protein [Thermoproteus neutrophilus V24Sta]
 gi|170934183|gb|ACB39444.1| SMC domain protein [Thermoproteus neutrophilus V24Sta]
          Length = 349

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++ L +  FR      +   A   IFVG NG GK++ILEA+  
Sbjct: 9  VRELEVKNFRGVREGSIKDFAAVNIFVGRNGTGKSSILEALYI 51


>gi|160875871|ref|YP_001555187.1| chromosome segregation protein SMC [Shewanella baltica OS195]
 gi|160861393|gb|ABX49927.1| chromosome segregation protein SMC [Shewanella baltica OS195]
          Length = 1138

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 32/225 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ F    T  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPFLQALTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND 107
            ADV   GS +            F +   R+ G     +  I ++ +  R       +N 
Sbjct: 61  MADVIFNGSSARKPVSVAGVELIFENKDGRLAGQYASYE-EIAVKRQVSRDGESWYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++        R++ R
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAG--ISRYKER 176

Query: 159 MIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
             +   R+   R  L   G   S     ++ ++A+        R 
Sbjct: 177 RRETENRIRHTRENLERLGDIRSELGKQLD-KLAQQAKAAKQYRE 220



 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 33/178 (18%)

Query: 197  INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            ++  R +++  L ++ +  +++      + S     D   ++    L+E   K   + R 
Sbjct: 924  LDQIRQKIV-RLGAINLAAIEEFEQQSERKSYLDHQDDDLNKGLATLEEAIRKIDKETRS 982

Query: 257  M----------DSMS--------RRTLIGPHRSDLIVDY--------CDKAITIAHGSTG 290
                       D            R  +     DL+             K  TI   S G
Sbjct: 983  RFKTTFDSVNEDLGRLFPKVFGGGRAYLALTDDDLLETGVTIMAQPPGKKNSTIHLLSGG 1042

Query: 291  EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FM 347
            E+ +  + +  A  RL       AP  +LDE+ A LD+       R++ ++   + F+
Sbjct: 1043 EKALTALSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVERFCRLLKEMSQSVQFI 1095


>gi|149911744|ref|ZP_01900350.1| Chromosome segregation ATPase, sms [Moritella sp. PE36]
 gi|149805169|gb|EDM65189.1| Chromosome segregation ATPase, sms [Moritella sp. PE36]
          Length = 1160

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + IS F+++  +  L F    T  VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MYLKKIKISGFKSFVDTTELHFPHDMTAVVGPNGCGKSNIIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARV-EGMEGLADISIKLETRDDRSVRCLQIND 107
            +DV   GS              F +   R+   +    ++SI+ E   D       +N 
Sbjct: 61  MSDVIFNGSVGRAPVSRASVELLFDNAQQRIDHALLQYNEVSIRRELYRD-GTNQYYLNG 119

Query: 108 VVIRVVD 114
              R  D
Sbjct: 120 KKCRRKD 126



 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 22/196 (11%)

Query: 158  RMIDFERLMRG-RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
             + ++++ ++    +L   G  + +     E Q           R + ++  +  + + +
Sbjct: 939  TLKEYQQQLKQFETQLQKIGAVNLAAVEEFEQQ---------SQRKQYLDEQTDDLEKAI 989

Query: 217  QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
              E      + +      +F  +F  +  ++           +       G      +  
Sbjct: 990  --ETLEAAIVKIDKQTRARFATTFEKINSDFKTLFPKVFGGGAAWLELTSGNLLDTGVTI 1047

Query: 277  Y----CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
                   K   I+  S GE+ +  + +  A  RL       AP  +LDE+ A LDE    
Sbjct: 1048 MARPPGKKNARISLLSGGEKALTALSLVFAIFRL-----NPAPFCMLDEVDAPLDELNVG 1102

Query: 333  ALFRIVTDIGSQI-FM 347
               ++V ++   + F+
Sbjct: 1103 RFCKLVQEMSETVQFI 1118


>gi|126695406|ref|YP_001090292.1| SMC ATPase superfamily chromosome segregation protein
          [Prochlorococcus marinus str. MIT 9301]
 gi|126542449|gb|ABO16691.1| putative chromosome segregation protein, SMC ATPase superfamily
          [Prochlorococcus marinus str. MIT 9301]
          Length = 1196

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 12/96 (12%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  +    F+++  ++++  +   T+  G NG GK+NIL+ I F   LS  RG R   
Sbjct: 4  VHINQVEFENFKSFGGNVKIPLEEGFTVVTGPNGSGKSNILDGILFCLGLSNSRGMRAER 63

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
            D+               EG      +S+K   +D
Sbjct: 64 LPDLINNSK--------VKEGKSSETSVSVKFNIQD 91


>gi|260771334|ref|ZP_05880260.1| DNA repair protein RecN [Vibrio furnissii CIP 102972]
 gi|260613650|gb|EEX38843.1| DNA repair protein RecN [Vibrio furnissii CIP 102972]
          Length = 553

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 23/188 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+S    GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALSLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A V           E  + L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFVLDNNIHATRWLEDNDLLDSKDCILRRTITKDGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           +  L + L       +  ++       +   LD+    ID   + R+  ++   R  N  
Sbjct: 117 LKSLGQLLINIHGQHAHQQLMK--PEYQLAMLDQYAGHIDLLKKTRLS-YQ-GWRQANNQ 172

Query: 173 LTEGYFDS 180
           L +   +S
Sbjct: 173 LKQMRENS 180


>gi|262197275|ref|YP_003268484.1| SMC domain protein [Haliangium ochraceum DSM 14365]
 gi|262080622|gb|ACY16591.1| SMC domain protein [Haliangium ochraceum DSM 14365]
          Length = 454

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          +  L++  F+++    +      T+ VG N  GK+NI +A+  L  G G R
Sbjct: 2  LLHLSLKNFKSFRKAEIPLGP-LTLLVGANASGKSNIRDALRIL-HGIGLR 50


>gi|242805496|ref|XP_002484543.1| nuclear condensin complex subunit Smc4, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218715168|gb|EED14590.1| nuclear condensin complex subunit Smc4, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 1467

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 10/90 (11%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           R+ I  L ++ F++YA  ++   F    +  VG NG GK+N+++++ F+    GFR +  
Sbjct: 251 RMVITHLVLTNFKSYAGKQVVGPFHVSFSSVVGPNGSGKSNVIDSLLFVF---GFRASKM 307

Query: 62  AD-----VTRIGSPSFFSTFARVEGMEGLA 86
                  +    +     TF  VE      
Sbjct: 308 RQGKISALIHNSARFPDLTFCEVEVHFQEI 337


>gi|307153460|ref|YP_003888844.1| DNA repair protein RecN [Cyanothece sp. PCC 7822]
 gi|306983688|gb|ADN15569.1| DNA repair protein RecN [Cyanothece sp. PCC 7822]
          Length = 586

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L I  F     L L F  +  +  G+ G GK+ IL+AI  +  G+         + R
Sbjct: 2  LSVLRIQNFTLIDQLELEFGPKLNVLTGETGAGKSIILDAIDIVLGGK-----VNNRLIR 56

Query: 67 IGSPSFF 73
           G+    
Sbjct: 57 QGTQQAI 63


>gi|28572277|ref|NP_789057.1| DNA repair protein RecN [Tropheryma whipplei TW08/27]
 gi|28410408|emb|CAD66794.1| DNA repair protein RecN [Tropheryma whipplei TW08/27]
          Length = 545

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 12/171 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRG-FRRASYAD 63
           I+ ++I  F N A   + F +  T+  G+ G GKT +L A+  L   PG   +     A 
Sbjct: 2   IEQISIRNFGNIAKADIDFGSDFTVITGETGAGKTMLLGALETLLGKPGNSKYPHNQSAQ 61

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           V        +      E +    +  + +      S + +   +        L K     
Sbjct: 62  VI-----GIWRVPRHFENVLPCIEGKLTVSREISLSGKSVANVNGKTANNSYLGKLRNKL 116

Query: 124 WLVPSMDRIFS-GLSMERRRFLDRMVFAID--PRHRRRMIDFERL-MRGRN 170
            +V              +R+ LD      D    ++    +  +  +  RN
Sbjct: 117 LVVHGQFAQVRLKNPALQRQILDGYAGNTDLLKEYQLAWSELSKTNLELRN 167


>gi|325685894|gb|EGD27960.1| DNA repair protein RecN [Lactobacillus delbrueckii subsp. lactis
           DSM 20072]
          Length = 562

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 67/215 (31%), Gaps = 37/215 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  Q T+ +G+ G GK+ +++A+S L    G R     ++ R
Sbjct: 2   LVELDIQNFAIIKSLKIKFQPQMTVLIGETGAGKSILIDALSLLL---GHRAQ--KEMVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADIS---------------IKLETRDDRSVRCLQINDV--V 109
            G      T       E + ++                I       +    ++IN     
Sbjct: 57  SGQSKAVVTGLFTLQDEEMREVEQIADDYGLPMDGDDLIISREISSKGRNVIRINGQLTT 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGL---------------SMERRRFLDRMVFAIDPR 154
           I  + ++ ++L           +                    +  +   +   +    +
Sbjct: 117 ITALAKIGEYLVDIHGQNDQQMLMDQSRQIDLVDEYAGKDFKPLLCKYQAEYQTWQSLNQ 176

Query: 155 HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
               +    R +  R  +L     + +     + Q
Sbjct: 177 RLEHLRRDSRELAQRQDILQFQVEELTQADLTDEQ 211


>gi|239908230|ref|YP_002954971.1| hypothetical protein DMR_35940 [Desulfovibrio magneticus RS-1]
 gi|239798096|dbj|BAH77085.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 499

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I+ L + +F  +    +      T   G N  GK+ ++EA+  L+              R
Sbjct: 2  IRRLTLVDFMAHGRTVIDLPPGLTALTGPNNSGKSAVVEALRCLTE-----NPPPRHCIR 56

Query: 67 IGSPSFFSTFARVEG 81
           G+          +G
Sbjct: 57 HGAAEARVEAELADG 71


>gi|257064178|ref|YP_003143850.1| DNA repair protein RecN [Slackia heliotrinireducens DSM 20476]
 gi|256791831|gb|ACV22501.1| DNA repair protein RecN [Slackia heliotrinireducens DSM 20476]
          Length = 536

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 99/305 (32%), Gaps = 38/305 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++                 T+  G+ G GKT +L AI  L   R     + +   R
Sbjct: 2   LDELHVQNVALIEDAVFSPCDGLTVVTGETGAGKTALLSAIKLLVGER-----ADSSAVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QIND----------VVIRVVDE 115
            GS +     ARVEG   + D  +  E R     R    IN            +   VD 
Sbjct: 57  DGSDA-----ARVEGRFFVGDEEVVAERRLTSDGRSRGTINGDMATVKMLAATLGSTVDL 111

Query: 116 LNKHLRISWLVPS----MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
             +H     L P+    M   ++    E   +   +  A + +    +    +  +  + 
Sbjct: 112 CGQHEHQHLLKPANHAVMLDAWAKDEAELAAYRKALAAAKEAQ--EHLESVRQAGKASSA 169

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIA-RVEMINALSSLIMEYVQKENFPHIKLSL-- 228
           +L E  F  +    ++ +  E         RVE    L+S   +  +  +     L L  
Sbjct: 170 MLEEARFVLARIDEVDPREGEYEEIEERLPRVEHAEELASSADQAYRCISADGAALELVR 229

Query: 229 --TGFLD--GKFDQSFCALKEEYAKK--LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
                LD   ++D+S  +      +   L +    D    R   G  R   ++    + +
Sbjct: 230 EAAALLDDMAEYDESLRSSAGSLQEASYLLEDVARDVRRYRD--GVDRDPELLQQLQERM 287

Query: 283 TIAHG 287
              HG
Sbjct: 288 GAFHG 292


>gi|327351429|gb|EGE80286.1| condensin subunit [Ajellomyces dermatitidis ATCC 18188]
          Length = 1464

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 16/120 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F    +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 257 PRMVITHLVMTNFKSYAGRQVVGPFHVSFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 313

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
                   +    +      F  VE               +  E++   S R  + N   
Sbjct: 314 MRQGKISALIHNSANFPDLQFCEVEVHFQEILDLPEGGHEVVPESQLIVSRRAFKNNSSK 373


>gi|314917869|gb|EFS81700.1| DNA repair protein RecN [Propionibacterium acnes HL050PA1]
 gi|314919758|gb|EFS83589.1| DNA repair protein RecN [Propionibacterium acnes HL050PA3]
          Length = 559

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 112/369 (30%), Gaps = 40/369 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L   +  T   G+ G GKT ++  I  L   +     +
Sbjct: 1   MIRSVRIRGLGVID-----ETVLEPSSALTAVTGETGAGKTMVVTGIGLLLGDK-----A 50

Query: 61  YADVTRIGSPSFFS-------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              + R G                RV  + G  +    +  R   S R   +        
Sbjct: 51  DTGLVRHGCDRAVVEAVLDTPDAGRVSELGGTVEDGEVICARHITSRRSRALLGGAQVTA 110

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +L   +     +         +   R+     R     +     RH +   +F R    
Sbjct: 111 SQLAHIVGDQVTIHGQSEQVRLVDAARQLDVVDRAAGDELAGYLSRHAQLWSEF-RAASQ 169

Query: 169 RNRLLTEGYFDSSW-CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIK 225
           R + L E    +      +  +++E+           ++I  ++ L    + +E+     
Sbjct: 170 RLQRLNEDRAGAEMEREVLTRRVSEVDAVDPKPHEDDDLIAEMAGLQAAQLIRESLNKAD 229

Query: 226 LSLTGFLDGKFDQSFC-ALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           + L G       Q    AL E+   +L      D    +   R   +    +DL      
Sbjct: 230 VLLNGVETSTGPQPGALALLEQAVHELDGTGDADPHAAELAERARQMSYDLTDLAASVAG 289

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FR 336
            A          Q++  +G  LA  + +          LLD  +A  D  +   L     
Sbjct: 290 HAARAEAD---PQRLEELGGRLAAIQRLLRARTTTLDDLLDSTAA--DRHRLAELDPGAT 344

Query: 337 IVTDIGSQI 345
            +  +G Q+
Sbjct: 345 DLDFLGQQV 353


>gi|307105686|gb|EFN53934.1| hypothetical protein CHLNCDRAFT_58396 [Chlorella variabilis]
          Length = 1348

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-- 64
           +K + +  F  +  L +       +  G NG GK+ +L+A+      R      Y  +  
Sbjct: 240 VKRVELQHFMCHTHLAIDLCPNVNLLTGANGSGKSAVLQALQCCLGARASDTGRYRAMKK 299

Query: 65  -TRIGSPSFF 73
             + G     
Sbjct: 300 FVQRGQAQAV 309


>gi|253741753|gb|EES98616.1| Hypothetical protein, similar to SMC2 [Giardia intestinalis ATCC
           50581]
          Length = 1572

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 20/147 (13%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + I+ + +  F++YA+      FD   T   G NG GK+N+L+AI F+         R  
Sbjct: 1   MYIQEIILDGFKSYATQTRIGPFDPSFTAITGLNGTGKSNVLDAICFVLGISSLSRIRVT 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           S   +  + G        A +            G E    + I  +   + + + L +N 
Sbjct: 61  SLTXLIYKQGQAGVTKASATLVLNNEDPKQSPPGYESYHMLEISRQIFKNGTTKYL-LNG 119

Query: 108 --VVIRVVDELNKHLRISWLVPSMDRI 132
               ++V+  L +   ++   P+   +
Sbjct: 120 AVSKLKVIKHLFRSAGLNVDNPTFLVL 146


>gi|147860939|emb|CAN82944.1| hypothetical protein VITISV_027872 [Vitis vinifera]
          Length = 158

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  +  L+    ++  + +G NG GK++++ AI+    G      R +S   
Sbjct: 23  ITEIELHNFMTFNDLKCKPGSRLNLVIGPNGSGKSSLVCAIALGLGGDPQLLGRASSIGA 82

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDV 108
             + G  S    + ++       +  I +  + D   +   + N  
Sbjct: 83  YVKRGEESG---YIKISLRGDTEEEQITIMRKIDTRNKSEWLFNGK 125


>gi|320325020|gb|EFW81090.1| hypothetical protein PsgB076_09175 [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320329321|gb|EFW85315.1| hypothetical protein PsgRace4_14499 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 113

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
          + I+ + +  FR     R+   +  +IFVG N  GKT+   A+           ++  D 
Sbjct: 1  MHIETVWVRNFRRLKDTRIDLASDISIFVGANNSGKTSAAHALQLF-------TSASKDR 53

Query: 64 --VTRIGSPSFFSTFARVEGMEGLADISIKLET 94
            +    S  +    A  EG +G+   +I L+ 
Sbjct: 54 FTLHDFSSECWDVINAFGEGADGVELPTISLDI 86


>gi|317182781|dbj|BAJ60565.1| hypothetical protein HPF57_1491 [Helicobacter pylori F57]
          Length = 362

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          IK + I  ++N+  L++        F G N  GKTN+LEA+  
Sbjct: 2  IKSVEIENYKNFKHLKMENFKLINFFTGQNDTGKTNLLEALHI 44


>gi|298713734|emb|CBJ48925.1| smc-like protein [Ectocarpus siliculosus]
          Length = 1267

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA---D 63
           +  +N+S F  +  L +    Q     G NG GK+ IL A+      +           D
Sbjct: 179 VLKINVSNFMCHRKLTVPLCKQVNFINGRNGSGKSAILAALQICLGAKAHLTHRAKKMTD 238

Query: 64  VTRIGSPSFFSTFARVEGMEG 84
             R G          +   E 
Sbjct: 239 FIRHGWKGDAVLEVTLLNTEH 259


>gi|299738507|ref|XP_001838399.2| nuclear condensin complex protein [Coprinopsis cinerea
           okayama7#130]
 gi|298403339|gb|EAU83424.2| nuclear condensin complex protein [Coprinopsis cinerea
           okayama7#130]
          Length = 1207

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 17/126 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I+ L I  F++Y    ++  +D       G NG GK+NIL+AI F   ++     R +
Sbjct: 1   MRIEELIIEGFKSYPVRTQISGWDPSFNAITGLNGSGKSNILDAICFVLGITNMSVMRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +           +G +    I++  +       + L    
Sbjct: 61  NQQDLIYKRGQAGVTKASVTIVFDNSDPAQSPDGFQAYKQITVTRQIAMPNITKWLLNGH 120

Query: 108 VVIRVV 113
              +  
Sbjct: 121 KSQQQQ 126


>gi|296454982|ref|YP_003662126.1| DNA repair ATPase [Bifidobacterium longum subsp. longum JDM301]
 gi|296184414|gb|ADH01296.1| ATPase for DNA repair [Bifidobacterium longum subsp. longum
          JDM301]
          Length = 495

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 6  KIKFLNISEFRNYASLRLVFDA-----QHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +++ L +   RN +   L FD        T   G NG GKT +++AI  L     
Sbjct: 3  RLQRLVLDNMRNISHGVLDFDDLPAGGSVTGIYGQNGSGKTTVIDAIGILRALLS 57


>gi|289663023|ref|ZP_06484604.1| recombination protein N [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 362

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 93/275 (33%), Gaps = 32/275 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSPSF--------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-- 110
            G+                  S  A  E ++  A   ++   R D   R   IN   +  
Sbjct: 57  HGADRAELSAEFQLPAEHPGLSWLADNE-LDDEAQCQLRRIIRADGGSRA-WINGRPVTS 114

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMR 167
             + EL   L           + +  S      LD   R     +   R+    ++ L+ 
Sbjct: 115 SQLAELASRLVEIHGQHEHQALMARHSQL--ALLDAYARNSAQREQV-RQASQRWQALLD 171

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            R+ L  +G   S     +E Q+AEL  +        I AL                  S
Sbjct: 172 ERDALSAQGDV-SDRIGFLEHQLAEL--EREDLDPAAIAALDVNHRRQAHATALIGACDS 228

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
           +   L+G    S   L ++    +    + +    
Sbjct: 229 VAQQLNGDDGASALGLLQDSRHDIARVAEHEPRLG 263


>gi|288553321|ref|YP_003425256.1| DNA repair and genetic recombination [Bacillus pseudofirmus OF4]
 gi|288544481|gb|ADC48364.1| DNA repair and genetic recombination [Bacillus pseudofirmus OF4]
          Length = 574

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 81/254 (31%), Gaps = 34/254 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F+   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LVELSIKHFAIIDELTIPFEKGLTVLTGETGAGKSIIIDAIGLLLGGRG-----SAEFVR 56

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-RVVDELNKHLRISW 124
            G           +E    +   + +L       +  L+ +     + +  +N  L    
Sbjct: 57  HGEKRAEIEGLFSIENHHPVIRKAQELGIDVQDDMFVLRRDITAQGKSICRINGKLVTLG 116

Query: 125 LVPSMDRIFSGLSME-RRRFLDRMVFAIDPRHRRRMIDFERL-MRGRNRLLTEGYFDSSW 182
           +     R   G  ++   +   + +   +  H   +  + +  +          +  +S 
Sbjct: 117 I----LREIGGGLVDIHGQHEHQALLQAEH-HLGMLDSYAKSDLAQAKAEYKSIFERASA 171

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
                               + +  LS    E  Q+ +   +   L    + K +     
Sbjct: 172 LE------------------KQVKHLSHNEQEMAQRIDL--LTYQLKEINEAKLEPEEDR 211

Query: 243 LKEEYAKKLFDGRK 256
           L  E   KL +  K
Sbjct: 212 LLTEERFKLANSEK 225


>gi|302561429|ref|ZP_07313771.1| DNA repair protein RecN [Streptomyces griseoflavus Tu4000]
 gi|302479047|gb|EFL42140.1| DNA repair protein RecN [Streptomyces griseoflavus Tu4000]
          Length = 576

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 79/253 (31%), Gaps = 43/253 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +
Sbjct: 1   MLEEMRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR---DDRSVRCLQINDVVIRVVDELN 117
            A + RIG+ +      R+   EG A +    E     DD ++   +      R    L 
Sbjct: 51  DAALVRIGARNA-VVEGRIAVPEGAAAVVRAEEAGAELDDGTLLVSRTVSAEGRSRAHLG 109

Query: 118 KHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
                  L+     D +      +++  L                   +L R R  L   
Sbjct: 110 GRSVPVGLLAELADDLVAVHGQTDQQGLL-------------------KLSRQRQALDRY 150

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEM--INALSSLIMEYVQKENFPHIKLSLTGFLD 233
             F      ++   + +        R     +  +++   E  Q+ +     L     ++
Sbjct: 151 AGF------AVAVPLGKYAEAYRRLRAVATELEQITTRARERAQEADLLRFGLEEIAAVE 204

Query: 234 GKFDQSFCALKEE 246
            +  +     +E 
Sbjct: 205 PRAGEDVELAEEA 217


>gi|167385644|ref|XP_001737430.1| structural maintenance of chromosomes protein [Entamoeba dispar
           SAW760]
 gi|165899778|gb|EDR26299.1| structural maintenance of chromosomes protein, putative [Entamoeba
           dispar SAW760]
          Length = 1203

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 7   IKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRASYA 62
           IK +++  F++Y   L    FD  + I +G NG GK+N  +AI F+     F   RAS  
Sbjct: 4   IKRISLKGFKSYQEQLNFEEFDPHYNIIIGRNGTGKSNFYDAIQFVLCDEKFGNLRASDR 63

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-------QINDVVIRV 112
                           VE +   +D    +E  +    RC+        IND   + 
Sbjct: 64  QFLLYEGNGESVVSGFVEVVFDNSDRRFMIEKDEVSVKRCIGLQKDEYFINDKRSKK 120



 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 10/108 (9%)

Query: 264  TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
            T  G     +   +   A TI   S G++ VV + +  A           AP  L DEI 
Sbjct: 1050 TYSGISLRVIFPAFGGDAKTIQQLSGGQKTVVALSLIFA-----IQRCDPAPFYLFDEID 1104

Query: 324  AHLDEDKRNALFRIVTD--IGSQIFMTGTDKSVFDSLNETAKFMRISN 369
            ++LD   R A+  ++      +Q  +T       + +    K+  I +
Sbjct: 1105 SNLDTLYREAVATLIQQQSKEAQYLVTT---FRPELILPANKWYEIKH 1149


>gi|149412853|ref|XP_001505381.1| PREDICTED: similar to U1 small nuclear ribonucleoprotein 1C
           [Ornithorhynchus anatinus]
          Length = 1083

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63
           I  + +  F  Y +  +       + +G NG GK++I+ AI     G+  F  R    + 
Sbjct: 49  IVRIAMENFLTYDTCEVSPGPHLNMIIGANGTGKSSIVCAICLGLGGKPSFIGRADKVSS 108

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             + G          +    G   I  ++    ++S   +       +VV+EL   L I 
Sbjct: 109 FVKHGCNKGL-IEIELFRASGNVVIKREIHIAGNQSSWFVDTKPATQKVVEELIAGLNIQ 167

Query: 124 W-----LVPSM 129
                  +P  
Sbjct: 168 VGNLCQFLPQD 178


>gi|145630086|ref|ZP_01785868.1| recombination protein F [Haemophilus influenzae R3021]
 gi|144984367|gb|EDJ91790.1| recombination protein F [Haemophilus influenzae R3021]
          Length = 63

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFMRISNH 370
            L+D+ ++ LD+ KR  L   +   GSQ+F+T  T + + +   E  K   + N 
Sbjct: 3   FLIDDFASELDQYKRALLAERLQQSGSQVFVTAITQRQLKEMQVENKKMFSVHNG 57


>gi|323474303|gb|ADX84909.1| hypothetical protein SiRe_0834 [Sulfolobus islandicus REY15A]
          Length = 126

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 24/47 (51%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  L I  FR     +L   +Q  I VG N  GK+ ILEAI F+S  
Sbjct: 25 INGLEIQNFRGIKYCKLEDLSQVNILVGRNNSGKSTILEAIYFISSL 71


>gi|295097183|emb|CBK86273.1| DNA replication and repair protein RecN [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 553

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 31/207 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGSPS-------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     +E   +  ++     D   R   IN   V + 
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEANQLEDGRECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +  ++      +++  LD       +  +   H R+     R +
Sbjct: 116 QLRELGQLLIQIHGQHAHQQLIK--PEQQKALLDGYAGEYALTQLMAEHYRQWHQSCREL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               +   E    +        Q+ EL
Sbjct: 174 AQHQQQSQERTARAELLEY---QLKEL 197


>gi|190343118|gb|ACE75518.1| HP1079 [Helicobacter pylori]
          Length = 370

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          I+ + I  F+ +   ++    +  I  G N VGK+N+LEA+  L  G+  
Sbjct: 2  IQSVRIKNFKTFKDTQIDGFTKLNIITGGNNVGKSNLLEALYCL-VGKSL 50


>gi|171911302|ref|ZP_02926772.1| ATP-dependent endonuclease of the OLD family-like protein
          [Verrucomicrobium spinosum DSM 4136]
          Length = 665

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++++ + +  FR    L +    +   TI VG N  GKT++++A+   +    
Sbjct: 1  MRLETIEVRNFRLLRRLSIDLTKEKTTTILVGPNNSGKTSVMDALRLFAGVGS 53


>gi|123967606|ref|YP_001008464.1| SMC ATPase superfamily chromosome segregation protein
          [Prochlorococcus marinus str. AS9601]
 gi|123197716|gb|ABM69357.1| putative chromosome segregation protein, SMC ATPase superfamily
          [Prochlorococcus marinus str. AS9601]
          Length = 1196

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 12/96 (12%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  +    F+++  ++++  +   T+  G NG GK+NIL+ I F   L+  RG R   
Sbjct: 4  VHINQVEFENFKSFGGNVKIPLEEGFTVVTGPNGSGKSNILDGILFCLGLANSRGMRAER 63

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
            D+               EG      +S+K   +D
Sbjct: 64 LPDLINNSK--------VKEGKSSETSVSVKFNIQD 91


>gi|331251290|ref|XP_003338244.1| hypothetical protein PGTG_19860 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
 gi|309317234|gb|EFP93825.1| hypothetical protein PGTG_19860 [Puccinia graminis f. sp. tritici
           CRL 75-36-700-3]
          Length = 955

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 81/282 (28%), Gaps = 40/282 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + + +F  +    +    Q    +G NG GK+ +L AI+ L   +     R  S   
Sbjct: 75  ISKVILVQFMCHRYQVVELGPQINFVIGHNGSGKSAVLTAITLLLGAKASSTNRGNSLKT 134

Query: 64  VTRIGSPSF-FSTFARVEGMEG----------------LADISIKLETRDDRSVRCLQIN 106
             R G      +      G E                   D S   + +  R  R   I 
Sbjct: 135 FIREGQKKAEVTLHLTNRGEEAFQPEIYGDEIIIQRNISKDGSSGFKIKSSRDHRVFFIR 194

Query: 107 DVVIRVV-DELNKH-----LRISWLV------PSMDRIFSGLSMERRRF-----LDRMVF 149
              ++ + DE  +      +    L       P + +         R          M+ 
Sbjct: 195 GTQLKQLTDEYEEIDANLKISEVLLTKKQEDLPELLQRVKSAEKNMREVQIASQAQEMII 254

Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209
            ++       I        R+  L +   +       + ++ E   KI+     +    +
Sbjct: 255 QLEKEIF--WIYVAEAEAERDLALQQLQNEERALPKYDTKLQETENKISELDDRIKTLEA 312

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
           +       + +     + L    D +  Q    + EE AK L
Sbjct: 313 AKAARNDDETHIRQADVDLK-EKDEEISQQSRDIAEENAKLL 353


>gi|302380522|ref|ZP_07268987.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|303233765|ref|ZP_07320419.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
 gi|302311465|gb|EFK93481.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3]
 gi|302495199|gb|EFL54951.1| conserved hypothetical protein [Finegoldia magna BVS033A4]
          Length = 527

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 53/152 (34%), Gaps = 11/152 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + ++ F++Y         +  +  G +  GKT ++ A+S++     F   +   +
Sbjct: 1   MYITDIYLTNFQSYEQGHFELSEKVNLITGASDSGKTALIRALSWVL----FNDYTTDLL 56

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G       +  VE      + +  L  R   +      N+V    + E     R   
Sbjct: 57  IRNG-------YNNVEVKIVFNNGNFILRGRKGNTNYYHIKNNVDNEDIKEYVNFGREIP 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
                D +F  +++   ++   +   ++    
Sbjct: 110 TEIQDDFLFKKVNLLNEQYNILIASQLENSFL 141


>gi|239620936|ref|ZP_04663967.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG
          52486]
 gi|239516197|gb|EEQ56064.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG
          52486]
          Length = 495

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 6  KIKFLNISEFRNYASLRLVFDA-----QHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +++ L +   RN +   L FD        T   G NG GKT +++AI  L     
Sbjct: 3  RLQRLVLDNMRNISHGVLDFDDLPAGGSVTGIYGQNGSGKTTVIDAIGILRALLS 57


>gi|126726632|ref|ZP_01742472.1| DNA repair protein RecN [Rhodobacterales bacterium HTCC2150]
 gi|126703961|gb|EBA03054.1| DNA repair protein RecN [Rhodobacterales bacterium HTCC2150]
          Length = 549

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 100/349 (28%), Gaps = 45/349 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRALEIRDMLIIERLELAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--QINDVVIRVVDELNKHLRI-- 122
            G+       A  +        S+  E         +  + N    R    +N       
Sbjct: 57  AGADQG-EVTAEFDLTPEHPAQSVLAEAGLPTGETLILRRTNSKDGRKTAYVNDRRCSGE 115

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
                S   +      + R  L+         HR+ +  F       + LL     D   
Sbjct: 116 VLRALSDVLVELHGQHDDRGLLNP------RGHRQLLDQFANC----SSLLDRVRSDWRA 165

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            ++ + ++ +    +   R E               E F    L     LD +  +    
Sbjct: 166 VAAAQKELQKAETALAAVREE---------------EEFLRHALGELDQLDPQQGEDQEL 210

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGP----HRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
             +    +  +  + D       +G        D    + D     A    G+    L  
Sbjct: 211 DAKRRLMQSAERIRDDITKAHNALGSDGAEGSMDDAARWLDDVANKAE---GQLDAPLAA 267

Query: 299 IFLAHARLISNTTGFAPI---LLLDEISAHLDEDKRNALFRIVTDIGSQ 344
           +  A   L     G       L  D     + E++  A+  +      Q
Sbjct: 268 LSRALNELAEAQQGIESCMQNLSFDTSELEMTEERLFAIRDLARKHNVQ 316


>gi|16329633|ref|NP_440361.1| hypothetical protein slr1056 [Synechocystis sp. PCC 6803]
 gi|1652116|dbj|BAA17041.1| slr1056 [Synechocystis sp. PCC 6803]
          Length = 672

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 30/52 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          +++K + +++F+ + S  L  + +    +G N  GKT+ILEAI  L   + F
Sbjct: 1  MELKSVKLNKFKRFESAELKTNGKLIALIGANESGKTSILEAIQCLDDDKAF 52


>gi|328716418|ref|XP_001951174.2| PREDICTED: structural maintenance of chromosomes protein 6-like
           [Acyrthosiphon pisum]
          Length = 1003

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 5/121 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGK----TNILEAISFLSPGRGFRRASYA 62
           IK + +  F  + +  L  + +     G NG GK    T ++      +     R  S  
Sbjct: 93  IKSITLQNFMCHENFHLSLNPRINFISGLNGSGKSAIQTALVIGFGANAITTS-RGVSLK 151

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              +    +   + +     EG  D          + +  ++  +        LN++ ++
Sbjct: 152 SFIKYNQLNATISISIANSGEGNGDCGPYKPEVYGKQITIVRQINETSNSFTILNENNKV 211

Query: 123 S 123
            
Sbjct: 212 V 212


>gi|225570641|ref|ZP_03779664.1| hypothetical protein CLOHYLEM_06741 [Clostridium hylemonae DSM
           15053]
 gi|225160559|gb|EEG73178.1| hypothetical protein CLOHYLEM_06741 [Clostridium hylemonae DSM
           15053]
          Length = 557

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 79/256 (30%), Gaps = 33/256 (12%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L + +      + + F     I  G+ G GK+ IL ++S    GR      
Sbjct: 1   MLQNLHVKNLALID-----EIEVDFKEGLNILTGETGAGKSIILGSVSLALGGR-----Y 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+ R G+   F     V   E   +    L+   +     L    +  R V  +N   
Sbjct: 51  TKDIIRAGADYGFVELTFVVENERQTEKLRALDIFPEDGAVVLSRRLMSGRSVSRINGET 110

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
               L+  +  I                      H+  +  +++     N L     F  
Sbjct: 111 VQMGLLKEVSSILID-------------IHGQHEHQSLL--YKK-----NHLEIVDAFAR 150

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +  +++ + A         R E+  A    + E  + +    +K         +     
Sbjct: 151 EYIEAVKEETAAAYRDYKSCRKELAEA---DMDEAQRAKELAFLKFEADEIEKAELKTGE 207

Query: 241 CALKEEYAKKLFDGRK 256
               E   +++ + RK
Sbjct: 208 DEELELLYRRMTNSRK 223


>gi|190574933|ref|YP_001972778.1| hypothetical protein Smlt3034 [Stenotrophomonas maltophilia
          K279a]
 gi|190012855|emb|CAQ46484.1| conserved hypothetical protein [Stenotrophomonas maltophilia
          K279a]
          Length = 553

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K++ + + +F+   ++ L       I VG NG GK++IL+A+   S  
Sbjct: 1  MKLESIKVEKFKRIDAIELPIAD-LNILVGSNGSGKSSILQALHLASCL 48


>gi|159127797|gb|EDP52912.1| cohesin complex subunit (Psm1), putative [Aspergillus fumigatus
          A1163]
          Length = 1289

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y    + L  DA  T  +G NG GK+N ++AISF+   +    R  + 
Sbjct: 3  KLIRLELFNFKSYKGHHVLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTNL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|167032730|ref|YP_001667961.1| SMC domain-containing protein [Pseudomonas putida GB-1]
 gi|166859218|gb|ABY97625.1| SMC domain protein [Pseudomonas putida GB-1]
          Length = 580

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 4/77 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
          + ++ + +  F+   S  L      T+  G NG GK+++ EAI F + G   R     D 
Sbjct: 1  MHLEHIFVENFQGLRSASLDLATPITLVAGFNGAGKSSLREAIGF-ALGGSGRVQHKKDY 59

Query: 64 --VTRIGSPSFFSTFAR 78
            +   G        + 
Sbjct: 60 GKLVTEGEKKAQIIVSH 76


>gi|154249899|ref|YP_001410724.1| chromosome segregation protein SMC [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153835|gb|ABS61067.1| chromosome segregation protein SMC [Fervidobacterium nodosum
           Rt17-B1]
          Length = 1164

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/156 (22%), Positives = 63/156 (40%), Gaps = 16/156 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           + +K + I  F+++A  +RL    + T  VG NG GK+N+++AI ++   +     R   
Sbjct: 1   MILKEIFIKGFKSFAEPVRLEISNRVTAIVGPNGSGKSNVVDAIRWVLGEQSMKEIRAQE 60

Query: 61  YADVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE-- 115
             DV   G+         +  +    G   +SI  E   D + + L +N  + R+ D   
Sbjct: 61  REDVVFWGNEKKPPAQFAYVELVFENGNERVSIARELSRDGTGKYL-LNGDIARLKDIRD 119

Query: 116 ------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
                   K+         +DRI S      R  ++
Sbjct: 120 FLMQHGYGKNPYSIIGQGQIDRIVSSTPENLRTMIE 155



 Score = 36.4 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 57/194 (29%), Gaps = 42/194 (21%)

Query: 154  RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
             ++    ++  L++ +  L               AQ          AR + +   + +  
Sbjct: 977  EYKAIEQEYNELLKQKQDLEDAKKKLEELIEQTNAQ----------AREQFLRVFNQINS 1026

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
             +  +    ++    TG +    D                    D +     I   ++  
Sbjct: 1027 AF--RTYIENLFYGGTGGMRILDDG-------------------DILESGIEITISKA-- 1063

Query: 274  IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
                  +   +   S GE+ +V + + +A               +LDE+ A LD+     
Sbjct: 1064 ----GKRVQRLQLLSGGEKALVGIALIMAMLEA-----NKGVFYVLDEVDAPLDDYNSEK 1114

Query: 334  LFRIVTDIGSQIFM 347
              R++    SQ  +
Sbjct: 1115 FRRLLEQEHSQFIV 1128


>gi|118359750|ref|XP_001013113.1| SMC family, C-terminal domain containing protein [Tetrahymena
          thermophila]
 gi|89294880|gb|EAR92868.1| SMC family, C-terminal domain containing protein [Tetrahymena
          thermophila SB210]
          Length = 1937

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNIL 44
          + IK ++I +F++Y++ ++        I  G NG GK+N+L
Sbjct: 1  MSIKSISIEKFKSYSNCKIEGLSDNINILYGKNGSGKSNLL 41


>gi|23465805|ref|NP_696408.1| hypothetical protein BL1243 [Bifidobacterium longum NCC2705]
 gi|23326498|gb|AAN25044.1| hypothetical protein with possible RecF domain [Bifidobacterium
          longum NCC2705]
          Length = 495

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 6  KIKFLNISEFRNYASLRLVFDA-----QHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +++ L +   RN +   L FD        T   G NG GKT +++AI  L     
Sbjct: 3  RLQRLVLDNMRNISHGVLDFDDLPAGGSVTGIYGQNGSGKTTVIDAIGILRALLS 57


>gi|17232453|ref|NP_489001.1| DNA repair protein [Nostoc sp. PCC 7120]
 gi|17134099|dbj|BAB76660.1| DNA repair protein [Nostoc sp. PCC 7120]
          Length = 582

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 28/208 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L I  F     L L F A   +  G+ G GK+ IL+AI  +  G+       + V R G+
Sbjct: 5   LRIENFALIDQLELDFGAGLNVLTGETGAGKSIILDAIDAVLGGK-----VSSRVIRTGT 59

Query: 70  PSFFSTFAR-----------------VEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
                                     ++    +    I + T + RS    ++N V++  
Sbjct: 60  SRAMVEATFTTNPPLAAWLTEQEIDLIDDNSVVISREITVSTSNIRS--RSRVNGVLVNR 117

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERLMRG 168
                   R+  +      +  G S + R +LD      +             +++    
Sbjct: 118 QLMGGLRDRLVEITAQGQTVQVGQSAQVRDWLDMYGGDALIQQRQHIGTAFSAYQQAHTN 177

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVK 196
             +  T           +  Q+ EL   
Sbjct: 178 LEKRRTSERERLQQLDLLTYQVQELSTA 205


>gi|190341503|gb|ACE74828.1| RecN [Enterobacter asburiae]
          Length = 553

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 31/207 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGSPS-------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
           +G+                   +     +E   +  ++     D   R   IN   V + 
Sbjct: 57  MGANRADLCARFSLKDTPAAQRWLEQNQLEDGRECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +  ++      +++  LD       +  +   H R+     R +
Sbjct: 116 QLRELGQLLIQIHGQHAHQQLVK--PEQQKALLDGYAGEYALTQLMAEHYRQWHQSCREL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               +   E    +   +    Q+ EL
Sbjct: 174 AQHQQQSQERAARAELLAY---QLKEL 197


>gi|195573397|ref|XP_002104680.1| GD18313 [Drosophila simulans]
 gi|194200607|gb|EDX14183.1| GD18313 [Drosophila simulans]
          Length = 1123

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           K+  + ++ F  +++L + F       VG+NG GK+ ++ A++ L      R  + A   
Sbjct: 102 KVISMRLTNFMCHSNLFIEFGPNINFLVGNNGSGKSAVITALA-LGLTSSARATNRASSI 160

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           +            ++  E  A ISI L     R  + 
Sbjct: 161 QK----------LIKNGEVSATISITLSNSGLRPFKA 187


>gi|166365571|ref|YP_001657844.1| DNA repair protein [Microcystis aeruginosa NIES-843]
 gi|166087944|dbj|BAG02652.1| DNA repair protein [Microcystis aeruginosa NIES-843]
          Length = 575

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 66/211 (31%), Gaps = 34/211 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYADVT 65
           +  L I  F     L L F     +  G+ G GK+ IL+AI  +  G+   R      V 
Sbjct: 2   LSCLQIENFTLIDRLELTFGNGLNVLTGETGAGKSIILDAIDIVLGGKVNHR------VI 55

Query: 66  RIGSPSFF---------STFARVEGME------GLADISIKLETRDDRSVRCLQINDVVI 110
           R GS                A +E  E          IS +L   ++      +IN VV 
Sbjct: 56  RQGSQQSTLEATFSLTPELIAWLESQEIDLLEDNSLTISRELVITNNSLRSRSRINGVVA 115

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDP---RHRRRMIDF 162
                      +  +      +    +  +R  LD      ++   +     +     + 
Sbjct: 116 NRQQMAQIRDFLVEITAQGQTVQLMDANRQRELLDLYGGESLLRQREKVATAYL-NWQES 174

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           + ++  R   L            +E Q+ EL
Sbjct: 175 KNILNNR---LQSEQNRLQRLDLLEYQLKEL 202


>gi|165938056|ref|ZP_02226616.1| putative RecF protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|165938073|ref|ZP_02226633.1| putative RecF protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|165940282|ref|ZP_02228809.1| putative RecF protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|330006573|ref|ZP_08305645.1| RecF/RecN/SMC protein [Klebsiella sp. MS 92-3]
 gi|165911789|gb|EDR30439.1| putative RecF protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|165914079|gb|EDR32696.1| putative RecF protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|165914096|gb|EDR32713.1| putative RecF protein [Yersinia pestis biovar Orientalis str.
          IP275]
 gi|328535788|gb|EGF62224.1| RecF/RecN/SMC protein [Klebsiella sp. MS 92-3]
          Length = 362

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I+++ I  FR+   + L       I  G NG GK+NI  AI  L+
Sbjct: 2  IQYIRIQNFRSVKDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 45


>gi|218782803|ref|YP_002434121.1| hypothetical protein Dalk_4981 [Desulfatibacillum alkenivorans
          AK-01]
 gi|218764187|gb|ACL06653.1| conserved hypothetical protein [Desulfatibacillum alkenivorans
          AK-01]
          Length = 375

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 5  IK--IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +K  I+ L+I  FR + ++ +    +  +  G N  GK++++EAI  LS
Sbjct: 1  MKPMIENLHIKNFRAFRNISIEGLGRVNLITGMNNTGKSSLIEAIRILS 49


>gi|150020781|ref|YP_001306135.1| chromosome segregation protein SMC [Thermosipho melanesiensis
           BI429]
 gi|149793302|gb|ABR30750.1| chromosome segregation protein SMC [Thermosipho melanesiensis
           BI429]
          Length = 1153

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 18/133 (13%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA--- 62
           +K + +  F+++    ++      T  VG NG GK+NI+EAI ++      +    +   
Sbjct: 5   LKGIFLKGFKSFGKPTKIPISPNITAIVGPNGSGKSNIVEAIQWVLGEHSLKNLRASEKF 64

Query: 63  DVTRIGSP-------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD- 114
           D+   GS        +F        G E      +              IN    R+ D 
Sbjct: 65  DIIFKGSKKLSSSRSAFVELSFNFNGEEYKIARELT-----SSGENTYYINGEKARLKDI 119

Query: 115 -ELNKHLRISWLV 126
             L     +  ++
Sbjct: 120 TALFGANGMVSII 132


>gi|157371310|ref|YP_001479299.1| SMC domain-containing protein [Serratia proteamaculans 568]
 gi|157323074|gb|ABV42171.1| SMC domain protein [Serratia proteamaculans 568]
          Length = 365

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA---ISFLSPGR 54
          + I+ L ++ FR+  +L+L    +  +  G NG GK+N+ +A   I   + GR
Sbjct: 1  MTIQQLQLTGFRSIRNLQLQLG-RLNVISGPNGCGKSNLYKAVRLIHEAACGR 52


>gi|72080984|ref|YP_288042.1| ABC transporter ATP-binding protein P115-like [Mycoplasma
           hyopneumoniae 7448]
 gi|71914108|gb|AAZ54019.1| putative ABC transporter ATP-binding protein P115-like protein
           [Mycoplasma hyopneumoniae 7448]
          Length = 979

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+  + I  F+++A  + + FD      +G NG GK+NI +AI ++   +     R  +
Sbjct: 1   MKLIKIEIEGFKSFAEPVSIKFDGSIVGIIGPNGSGKSNINDAIKWVLGEKSVKQLRGQN 60

Query: 61  YADVTRIGS-------PSFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRV 112
             DV   GS        +        E  E  A I +I    +  +       ND ++R 
Sbjct: 61  MDDVIFAGSKTVMPVNKAMVKLTFLDETREDSAQIFTISRVIKRGQGTNEYFYNDQLVRY 120

Query: 113 VD 114
            D
Sbjct: 121 KD 122


>gi|71894005|ref|YP_279451.1| putative ABC transporter ATP-binding protein P115-like [Mycoplasma
           hyopneumoniae J]
 gi|71852132|gb|AAZ44740.1| putative ABC transporter ATP-binding protein P115-like protein
           [Mycoplasma hyopneumoniae J]
          Length = 979

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+  + I  F+++A  + + FD      +G NG GK+NI +AI ++   +     R  +
Sbjct: 1   MKLIKIEIEGFKSFAEPVSIKFDGSIVGIIGPNGSGKSNINDAIKWVLGEKSVKQLRGQN 60

Query: 61  YADVTRIGS-------PSFFSTFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRV 112
             DV   GS        +        E  E  A I +I    +  +       ND ++R 
Sbjct: 61  MDDVIFAGSKTVMPVNKAMVKLTFLDETREDSAQIFTISRVIKRGQGTNEYFYNDQLVRY 120

Query: 113 VD 114
            D
Sbjct: 121 KD 122


>gi|71000142|ref|XP_754788.1| cohesin complex subunit  (Psm1) [Aspergillus fumigatus Af293]
 gi|66852425|gb|EAL92750.1| cohesin complex subunit  (Psm1), putative [Aspergillus fumigatus
          Af293]
          Length = 1289

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y    + L  DA  T  +G NG GK+N ++AISF+   +    R  + 
Sbjct: 3  KLIRLELFNFKSYKGHHVLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTNL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|332306123|ref|YP_004433974.1| chromosome segregation protein SMC [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173452|gb|AEE22706.1| chromosome segregation protein SMC [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1164

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 94/288 (32%), Gaps = 39/288 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F    T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLKKIKLAGFKSFVDPTSIPFVDDMTAIVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS +            F +T  R++G      +IS+K     D       +N+
Sbjct: 61  MIDVIFNGSSARKPVSQCTVELVFDNTSGRIQGEFASYNEISVKRLVTKDGQS-SYFLNN 119

Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
              R  D         L           ++ R+      E R F++             +
Sbjct: 120 AKCRRRDVTDLFLGTGLGPRSYAIIEQGTISRLIESKPQELRVFIEEAAG---------I 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI-ARVEMINALSSLIMEYVQK 218
             ++     R                ++    ELG ++    +          + +  ++
Sbjct: 171 SKYK---ERRRETENRIRHTKENLERLDDVRGELGAQLQKLEKQAAAAKRYKELKQQERQ 227

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
                  +  + F            ++E   + F  R+       TL 
Sbjct: 228 LRNELAAIRWSNFNAKIVRLERQTQQQEADLEAFIARQRGDEKEITLY 275



 Score = 37.2 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 67/182 (36%), Gaps = 26/182 (14%)

Query: 186  IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
             + Q+      +       + A+    ++  +K++       L   L+   +Q+   + +
Sbjct: 947  WQEQLDRTVAAVARLGAVNLAAVEEYDVQAQRKQHLDEQNQDLESALE-TLEQAIRKIDK 1005

Query: 246  EYAKKLFDGRKMDSMSRRTLI----GPHRSDLIVDYCD---------------KAITIAH 286
            E   +  +     +   +TL     G   + L +   D               K  TI  
Sbjct: 1006 ETRTRFKNTFDRVNNGLQTLFPKVFGGGSAYLALTDDDLLETGVSIMARPPGKKNSTIHL 1065

Query: 287  GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI- 345
             S GE+ +  + +  A  +L       AP  LLDE+ A LD+       ++V+++ + + 
Sbjct: 1066 LSGGEKALTALSLVFAIFQL-----NPAPFCLLDEVDAPLDDANVGRFCKLVSEMSASVQ 1120

Query: 346  FM 347
            F+
Sbjct: 1121 FI 1122


>gi|256761742|ref|ZP_05502322.1| DNA repair protein RecN [Enterococcus faecalis T3]
 gi|256682993|gb|EEU22688.1| DNA repair protein RecN [Enterococcus faecalis T3]
          Length = 560

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 98/266 (36%), Gaps = 33/266 (12%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N++ ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +
Sbjct: 2   NKM-LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SS 55

Query: 63  DVTRIGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQIND 107
           D  R G+        FS     E  + L ++ I+ E          +   ++V  +    
Sbjct: 56  DYIRQGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRI 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDF 162
           V I  +  + ++L           +      ER       F  + + A+  ++ +   ++
Sbjct: 116 VNITNLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEY 172

Query: 163 ERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             L   +R R +   E             ++A     +     +++   + L       +
Sbjct: 173 RALEAKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIAD 231

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKE 245
                  +L G  D   D+   ++ E
Sbjct: 232 ALTISYAALNGEDDSSLDKIGTSMNE 257


>gi|239832300|ref|ZP_04680629.1| DNA repair protein RecN [Ochrobactrum intermedium LMG 3301]
 gi|239824567|gb|EEQ96135.1| DNA repair protein RecN [Ochrobactrum intermedium LMG 3301]
          Length = 559

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L + F    ++  G+ G GK+ +L+++S     RG      A + R
Sbjct: 2   LSHLSIRDIVLIERLDIEFKTGLSVLTGETGAGKSILLDSLSLALGARG-----DASLVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRV 112
            G+                   F R  G +   DI ++     D   R    +    + +
Sbjct: 57  HGADQGQVTAVFDVPGGHPARNFLRDNGFDDDGDIILRRLQMGDGRTRVFINDQAASVAL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMR 167
           + +L + L           +    +   R  LD         A+     +   D E  + 
Sbjct: 117 LRDLGRKLVEIHGQHDDRALI--DTDLHRTLLDAFGGLEQEAAVVRERHKAWRDAETALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
                + +   +  +  S   ++ +L
Sbjct: 175 KHRARVEQAEREGDYLRSSVEELTKL 200


>gi|126174868|ref|YP_001051017.1| chromosome segregation protein SMC [Shewanella baltica OS155]
 gi|125998073|gb|ABN62148.1| chromosome segregation protein SMC [Shewanella baltica OS155]
          Length = 1138

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 32/225 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ F    T  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPFLQALTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND 107
            ADV   GS +            F +   R+ G     +  I ++ +  R       +N 
Sbjct: 61  MADVIFNGSSARKPVSVAGVELIFENKDGRLAGQYASYE-EIAVKRQVSRDGESWYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++        R++ R
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAG--ISRYKER 176

Query: 159 MIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
             +   R+   R  L   G   S     ++ ++A+        R 
Sbjct: 177 RRETENRIRHTRENLERLGDIRSELGKQLD-KLAQQAKAAKQYRE 220



 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 33/178 (18%)

Query: 197  INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            ++  R +++  L ++ +  +++      + S     D   ++    L+E   K   + R 
Sbjct: 924  LDQIRQKIV-RLGAINLAAIEEFEQQSERKSYLDHQDDDLNKGLATLEEAIRKIDKETRS 982

Query: 257  M----------DSMS--------RRTLIGPHRSDLIVDY--------CDKAITIAHGSTG 290
                       D            R  +     DL+             K  TI   S G
Sbjct: 983  RFKTTFDSVNEDLGRLFPKVFGGGRAYLALTDDDLLETGVTIMAQPPGKKNSTIHLLSGG 1042

Query: 291  EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FM 347
            E+ +  + +  A  RL       AP  +LDE+ A LD+       R++ ++   + F+
Sbjct: 1043 EKALTALSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVERFCRLLKEMSQSVQFI 1095


>gi|317124696|ref|YP_004098808.1| DNA replication and repair protein RecN [Intrasporangium calvum DSM
           43043]
 gi|315588784|gb|ADU48081.1| DNA replication and repair protein RecN [Intrasporangium calvum DSM
           43043]
          Length = 599

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 74/250 (29%), Gaps = 49/250 (19%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + ++I+ + +          L       +  G+ G GKT ++  +  L   R     +
Sbjct: 1   MFSEMRIRGVGVIH-----DAVLDLSPGLNVLTGETGAGKTMVVSGLGLLLGER-----A 50

Query: 61  YADVTRIGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVR-CLQIND 107
            + + R G+   F                  E      D  + +      S R    +  
Sbjct: 51  DSSLVRSGADQAFVEGVVQLPPGHPALDRAAEAGAEHDDGELVIARTLSASGRSRAHVGG 110

Query: 108 --VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
               + V+ EL +HL          R+  G +   R  LD             +      
Sbjct: 111 RTAPVGVLAELGRHLVAVHGQADQWRLKQGDA--HREVLDGFGG-------PALG----A 157

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM--INALSSLIMEYVQKENFPH 223
           +R R   L                 AE    +  +R     I++L++ + E    +  P 
Sbjct: 158 LRDRVGRLH---------DEWRGAHAEHDRLVAESRERAREIDSLTAALEEIEAVDPQPG 208

Query: 224 IKLSLTGFLD 233
             LSL    +
Sbjct: 209 EDLSLRAEDE 218


>gi|315042508|ref|XP_003170630.1| chromosomes protein 1 structural maintenance [Arthroderma gypseum
          CBS 118893]
 gi|311344419|gb|EFR03622.1| chromosomes protein 1 structural maintenance [Arthroderma gypseum
          CBS 118893]
          Length = 1289

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|302784929|ref|XP_002974236.1| hypothetical protein SELMODRAFT_174036 [Selaginella moellendorffii]
 gi|300157834|gb|EFJ24458.1| hypothetical protein SELMODRAFT_174036 [Selaginella moellendorffii]
          Length = 1028

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 72/227 (31%), Gaps = 28/227 (12%)

Query: 5   IK--IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           ++  I  + +  F  Y+ +      +  + +G NG GK++++ A++    G      R  
Sbjct: 1   MRGNITQIRVHNFMTYSDITSKPGPRLNLVIGPNGTGKSSLVCALAIGLGGEPQLLGRAG 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-INDVVIRVVDEL-- 116
              D  + G    +     +       D S  ++   ++  +    +N         L  
Sbjct: 61  HIGDYVKRGEDCGW---VEITLRGDSPDASTIIKRSFNKQNKSEWQLNGESSTKKAVLES 117

Query: 117 -----NKHLRISWLVPSMDRI-------FSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                 +   ++  +P               L+   +   D  +         +++   +
Sbjct: 118 VQQFNIQVNNLTQFLPQDRVCEFAKMTPIELLAETEKAVGDPELSHQH----EKLVTLNQ 173

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
            ++ R   + +         S  A++ E  V+    R  +   + S+
Sbjct: 174 QLKQRQLSVRQLENALRQHKSNNAEL-EKDVERVQERNRLFEKVKSM 219


>gi|296100454|ref|YP_003610600.1| putative RecF protein [Enterobacter cloacae subsp. cloacae ATCC
          13047]
 gi|295054913|gb|ADF59651.1| putative RecF protein [Enterobacter cloacae subsp. cloacae ATCC
          13047]
          Length = 362

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I  L+I  +R+   + L  + Q  I  G NG GK+NI +AI  +
Sbjct: 2  INTLHIQNYRSIRDMSLELE-QLNIVFGPNGTGKSNIYKAIHLM 44


>gi|269121305|ref|YP_003309482.1| DNA repair protein RecN [Sebaldella termitidis ATCC 33386]
 gi|268615183|gb|ACZ09551.1| DNA repair protein RecN [Sebaldella termitidis ATCC 33386]
          Length = 552

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 91/255 (35%), Gaps = 27/255 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L ++      ++ L F+       G+ G GK+ IL+ IS L   R       +D+ R
Sbjct: 2   LRELRLNNLAIIKNVDLNFENGFVALTGETGAGKSIILDGISLLIGERS-----SSDMIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G     +  A  +  E    I   L+           I D  + +   L++  +   LV
Sbjct: 57  SGEEK-LTAEAVFDLTEEQVKILNDLD---------FDIEDEELIITRNLSRDGKSKVLV 106

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
             M    S L       LD +V   + ++     ++  L+  +  L  +G          
Sbjct: 107 NGMRVPVSKLKEIMSHVLD-LVGQHNHQYLLN-KNYHLLLLDKF-LSKDGLELKENIKKT 163

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
             +++ L  KIN      I  +   I E      F   ++       G+ D+    L+EE
Sbjct: 164 IQKISSLSKKINE-----IEEIKRQIEEKKDIYEFHLSEIDALELKSGEDDE----LEEE 214

Query: 247 YAKKLFDGRKMDSMS 261
           Y      G+  D ++
Sbjct: 215 YKILFNAGKIKDKLA 229


>gi|149201407|ref|ZP_01878382.1| SMC protein [Roseovarius sp. TM1035]
 gi|149145740|gb|EDM33766.1| SMC protein [Roseovarius sp. TM1035]
          Length = 1151

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 79/224 (35%), Gaps = 30/224 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MQFSKLRLTGFKSFVDPTDLIIARGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGDG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+      +F      ++  + LA         +++  R  R V    ++N  
Sbjct: 61  MEDVIFAGAATRSARNFAEVVIHLDNSDRLAPAGFNEADQLEITRRITRDVGSAYKVNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKSRRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARV 202
             E  ++ R         D      ++  AQ+A    +    R 
Sbjct: 177 RHEAELKLRGAEANLTRVDDVVEQLANQLAQLARQAKQAARYRQ 220


>gi|123965301|ref|YP_001010382.1| SMC ATPase superfamily chromosome segregation protein
          [Prochlorococcus marinus str. MIT 9515]
 gi|123199667|gb|ABM71275.1| putative chromosome segregation protein, SMC ATPase superfamily
          [Prochlorococcus marinus str. MIT 9515]
          Length = 1194

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  +    F+++   +++  +   T+  G NG GK+NIL+ I F   L+  RG R   
Sbjct: 2  VHINQVEFENFKSFGGCVKIPLEEGFTVVTGPNGSGKSNILDGILFCLGLANSRGMRADR 61

Query: 61 YADVTRIG-------SPSFFSTFARVEGMEGLADI 88
            D+           S +F S    +E      DI
Sbjct: 62 LPDLINNSKVKEGKASETFVSVRFNIEDWSPREDI 96


>gi|114327842|ref|YP_744999.1| hypothetical protein GbCGDNIH1_1178 [Granulibacter bethesdensis
          CGDNIH1]
 gi|114316016|gb|ABI62076.1| hypothetical membrane spanning protein [Granulibacter
          bethesdensis CGDNIH1]
          Length = 690

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
          ++IK + I  FR    + +  + + T+ VG N  GKT+I E    L   +   FR
Sbjct: 1  MRIKGVEIENFRLLRDVAVGLEERTTLIVGRNNSGKTSIAELFRRLLGEKAPSFR 55


>gi|57641330|ref|YP_183808.1| ATP-dependent endonuclease [Thermococcus kodakarensis KOD1]
 gi|57159654|dbj|BAD85584.1| predicted ATP-dependent endonuclease, OLD family [Thermococcus
          kodakarensis KOD1]
          Length = 653

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I  + ++ FR+  ++++  D   T+ +G NG GK+++L+A+   
Sbjct: 1  MRIVEIEVNNFRSLRAVKMPLDE-LTVLIGRNGAGKSSLLQALDLF 45


>gi|327393640|dbj|BAK11062.1| conserved hypothetical protein [Pantoea ananatis AJ13355]
          Length = 864

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 80/209 (38%), Gaps = 29/209 (13%)

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-----------RVEMINALSSLIMEY 215
           + R   L +         ++  +  EL  +I +A           R+++ N+L S+    
Sbjct: 501 KLREARLYKQASKKRKIDALIKESKELKARIMLAEKLEGLITLVGRLKLYNSLMSISFSA 560

Query: 216 VQKENFPHIKL----SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           + ++     KL     ++  L  + D+ F  L   + K +   R        +L+     
Sbjct: 561 ISRKVSDKSKLFANSIISNSLKKELDEEFFKLGVSHIKTVLKSRVSKGKVFYSLL----- 615

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
            L +   +K   I   S GEQ+ V +  FLA  +L +++ G    ++ D+  + LD  +R
Sbjct: 616 -LDIPVSNKVDLI--LSEGEQRAVSLASFLAELKLANHSCG----IIFDDPVSSLDHHRR 668

Query: 332 NALFRIV--TDIGSQIFMTGTDKSVFDSL 358
             +   +       Q+ +   D +    L
Sbjct: 669 RRVATRLVEEARNRQVIILTHDIAFLSEL 697


>gi|315180934|gb|ADT87848.1| DNA repair protein RecN [Vibrio furnissii NCTC 11218]
          Length = 553

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 65/188 (34%), Gaps = 23/188 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+S    GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALSLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A V           E  + L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFVLDNNIHATRWLEDNDLLDGKDCILRRTITKDGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           +  L + L       +  ++       +   LD+    ID   + R+  ++   R  N  
Sbjct: 117 LKSLGQLLINIHGQHAHQQLMK--PEYQLAMLDQYAGHIDLLKKTRLS-YQ-GWRQANNQ 172

Query: 173 LTEGYFDS 180
           L +   +S
Sbjct: 173 LKQMRENS 180


>gi|294155353|ref|YP_003559737.1| chromosomal segregation and condensation complex, SMC protein
           [Mycoplasma crocodyli MP145]
 gi|291600153|gb|ADE19649.1| chromosomal segregation and condensation complex, SMC protein
           [Mycoplasma crocodyli MP145]
          Length = 982

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 14/124 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           +K+  +    F+++A  + L FD   T  VG NG GK+NI +AI   L        R  +
Sbjct: 1   MKLIKIEAHGFKSFADPVVLHFDGGVTGIVGPNGSGKSNINDAIKWVLGEQSSKELRGDN 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGLAD-----ISIKLETRDDRSVRCLQINDVVI 110
             DV   GS +             +   G +      I+I       +      IN  + 
Sbjct: 61  MHDVIFAGSKTVKALDKAEVTLTFDNRLGASSFPSEIITISRVLERGKGANQYYINGELC 120

Query: 111 RVVD 114
           R  D
Sbjct: 121 RHKD 124


>gi|288941061|ref|YP_003443301.1| chromosome segregation protein SMC [Allochromatium vinosum DSM 180]
 gi|288896433|gb|ADC62269.1| chromosome segregation protein SMC [Allochromatium vinosum DSM 180]
          Length = 1170

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 99/275 (36%), Gaps = 44/275 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++++ + ++ F+++     + F +     VG NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLERIKLAGFKSFVDPTTVHFPSNLVGIVGPNGCGKSNVIDAVRWVMGESSAKMLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQIND 107
            ADV   GS              F ++    EG     D IS+K +   D       +N 
Sbjct: 61  MADVIFNGSTGRKPVGVASIELIFDNSDGGAEGEYAAFDQISVKRQVARDGQS-SYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     RI    P   R+F   +       ERRR 
Sbjct: 120 TRCRRRDIQDLFLGTGLGPRSYAIIEQGMISRIIEARPEDLRLFLEEAAGISKYKERRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
            +  +      +  R+ D    +  +   L      +   + + A+   L +++   R  
Sbjct: 180 TENRMRH-TRENLDRLNDVREEVGKQLLHLERQAATAEKYTQLRAEERRLDLELKALRWR 238

Query: 204 MI-NALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            + + L +L     + EN     L+    L+ + +
Sbjct: 239 ALDDELQALSRRLAEAENQGEAGLAEQRRLEAEIE 273



 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              +  +I   S GE+ +  V +  A  +L       AP  +LDE+ A LD+        +
Sbjct: 1062 GKRNASIHLLSGGEKALTAVALVFAIFQL-----NPAPFCMLDEVDAPLDDANVGRFCEL 1116

Query: 338  VTDIGSQI 345
            V  +  Q+
Sbjct: 1117 VRAMSDQV 1124


>gi|260890374|ref|ZP_05901637.1| DNA repair protein RecN [Leptotrichia hofstadii F0254]
 gi|260859994|gb|EEX74494.1| DNA repair protein RecN [Leptotrichia hofstadii F0254]
          Length = 202

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L ++       L L F+ +     G+ G GK+ IL+ IS L   R        D+ R
Sbjct: 2  LRELRLNNLAIIKKLDLEFNEKFIALTGETGAGKSIILDGISLLIGERSH-----TDMIR 56

Query: 67 IGSPSFFST-FARVEGMEGLADISIKLETRDD 97
           G  S F+     ++  +      +  E  DD
Sbjct: 57 NGEESLFAEGIFELDENQKKRLNELGFEIDDD 88


>gi|257086343|ref|ZP_05580704.1| DNA repair protein RecN [Enterococcus faecalis D6]
 gi|256994373|gb|EEU81675.1| DNA repair protein RecN [Enterococcus faecalis D6]
          Length = 560

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 104/292 (35%), Gaps = 38/292 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N++ ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +
Sbjct: 2   NKM-LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SS 55

Query: 63  DVTRIGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQIND 107
           D  R G+        FS     E  + L ++ I+ E          +   ++V  +    
Sbjct: 56  DYIRQGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRI 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDF 162
           V I  +  + ++L           +      ER       F  + + A+  ++ R   ++
Sbjct: 116 VNITNLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTRAYQEY 172

Query: 163 ERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             L   +R R +   E             ++A     +     +++   + L       +
Sbjct: 173 RALEAKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIAD 231

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
                  +L G  D   D+   ++ E     L     +DS  +        +
Sbjct: 232 ALTISYAALNGEDDSSLDKIGTSMNE-----LASIESLDSEYKTLSDTVQNA 278


>gi|291087520|ref|ZP_06346676.2| DNA repair protein RecN [Clostridium sp. M62/1]
 gi|291074892|gb|EFE12256.1| DNA repair protein RecN [Clostridium sp. M62/1]
          Length = 569

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 80/271 (29%), Gaps = 33/271 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++       S  + F+    I  G+ G GK+ I+ +++    G+     +  ++ R
Sbjct: 9   LFHLSVRNLALIDSAEVEFEEGLNILTGETGAGKSVIIGSVNVALGGK-----ASKELIR 63

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL------------QINDVVI--RV 112
            G    +         E   +   K E   D     +            +IND  +    
Sbjct: 64  QGCDYAYVELVFSVTDEKKREELRKKEVFPDTDGNLIISKKIMPARSISRINDETVTAAR 123

Query: 113 VDELNKHL---------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + E+   L         +          I       R   L +        +       E
Sbjct: 124 LREITGILIDIHGQHEHQSLLYHSKHLEILDEYGKSRIEPLKKKTAEAYQEYVAVKKKME 183

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMIN--ALSSLIMEYVQKE 219
               G+ +LL E  F       IE      G   ++        N   ++  + E  +  
Sbjct: 184 YYQSGKEQLLREADFLRFEIEEIENAGLRAGEEEELESRYRRFSNSRRIAESLSEAYRAV 243

Query: 220 NFPHIKLSLTGFL-DGKFDQSFCALKEEYAK 249
           +   I  +L       +FD+    ++++   
Sbjct: 244 SGEQIARALKAVETASQFDEGLSGIRDQLYD 274


>gi|188586308|ref|YP_001917853.1| DNA repair protein RecN [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350995|gb|ACB85265.1| DNA repair protein RecN [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 557

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 45/129 (34%), Gaps = 21/129 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI +F     L L       I  G+ G GKT IL+A+  +  GR     +  +  R
Sbjct: 2   LVHLNIKDFALIDHLILEPGPGLNILTGETGAGKTIILDALGLILGGR-----ASTEYIR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD---------------ISIKLETRDDRSVRCLQINDVVIR 111
            GS          +   G  D               + I  E    +S+  +    V + 
Sbjct: 57  TGSKKAI-VQGVFQLKSGPIDNILEEWGIAKEDNQLLIITREISQGKSIAKINDQIVTVN 115

Query: 112 VVDELNKHL 120
            + EL K L
Sbjct: 116 KLKELGKQL 124


>gi|167523340|ref|XP_001746007.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775808|gb|EDQ89431.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1872

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 11   NISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYADVTR 66
             I  F++Y        F   H + VG NG GK+N   AI F+        R      +  
Sbjct: 1146 TIKGFKSYRDQTFVEPFSPHHNVIVGRNGSGKSNFFFAIRFVLSDMFSSMRAPERRALLH 1205

Query: 67   IGSPSFFSTFARVEGMEGLADISIKLET 94
             G+       A VE +   +D  I ++ 
Sbjct: 1206 EGAGRAVVD-AYVEIVFDNSDGRIPIDK 1232


>gi|77362017|ref|YP_341591.1| putative ABC transporter ATP-binding protein [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876928|emb|CAI89145.1| putative ABC transporter ATP-binding protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 652

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 201 RVEMINALSSLIMEYVQKENFPH------------IKLSLTGFLDGKFDQSFCALKEEYA 248
           R E++N   + ++    K+ F              +K ++  F D    ++   L+E  A
Sbjct: 455 RDEVLNTRYANLLTQQSKDTFEQKRSIQVADHIGKLKNTMKSFADELIRENVTGLEEHIA 514

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTGEQKVVLVGIFLAHARLI 307
            K FD  + +++     I P    L +   +K  ++ +  S GE++++ + I       +
Sbjct: 515 AKFFDLSRKNNLITGVKICPDSFKLTLLDNNKNPMSPSRLSAGERQLLAIAI----LWGL 570

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGTDKSV 354
           +  +G     ++D     LD   R+ L         SQ+ +  TD+ +
Sbjct: 571 AEASGKEIPTVIDTPLGRLDGKHRSKLINNYFPKASSQVILLSTDEEI 618



 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEF-----RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + IK L +  F     R+  +L    +    +F G NG GKT  L+A+  +  G+
Sbjct: 1  MIIKQLTLENFGIYQGRHEVNLSTSANKPIILFGGLNGGGKTTFLDALQLVLYGK 55


>gi|299132401|ref|ZP_07025596.1| conserved hypothetical protein [Afipia sp. 1NLS2]
 gi|298592538|gb|EFI52738.1| conserved hypothetical protein [Afipia sp. 1NLS2]
          Length = 694

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTN 42
          +K+  ++I  FR   S+ +  + + TIFVG N  GKT+
Sbjct: 1  MKLSGISIRNFRRLESVTIDIEDKETIFVGPNNSGKTS 38


>gi|256852637|ref|ZP_05558008.1| DNA repair protein RecN [Enterococcus faecalis T8]
 gi|256711982|gb|EEU27019.1| DNA repair protein RecN [Enterococcus faecalis T8]
          Length = 560

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 98/266 (36%), Gaps = 33/266 (12%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N++ ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +
Sbjct: 2   NKM-LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SS 55

Query: 63  DVTRIGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQIND 107
           D  R G+        FS     E  + L ++ I+ E          +   ++V  +    
Sbjct: 56  DYIRQGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRI 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDF 162
           V I  +  + ++L           +      ER       F  + + A+  ++ R   ++
Sbjct: 116 VNITNLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTRAYQEY 172

Query: 163 ERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             L   +R R +   E             ++A     +     +++   + L       +
Sbjct: 173 RALEAKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIAD 231

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKE 245
                  +L G  D   D+   ++ E
Sbjct: 232 ALTISYAALNGEDDSSLDKIGTSMNE 257


>gi|209527443|ref|ZP_03275948.1| SMC domain protein [Arthrospira maxima CS-328]
 gi|209492116|gb|EDZ92466.1| SMC domain protein [Arthrospira maxima CS-328]
          Length = 382

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  + +  +RN+ ++ +    +    VG N  GK+N L+A  FL
Sbjct: 1  MIISHIILKNWRNFRAVEVDLCDRI-FIVGPNACGKSNFLDAFRFL 45


>gi|109898094|ref|YP_661349.1| chromosome segregation protein SMC [Pseudoalteromonas atlantica
           T6c]
 gi|109700375|gb|ABG40295.1| chromosome segregation protein SMC [Pseudoalteromonas atlantica
           T6c]
          Length = 1164

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 105/304 (34%), Gaps = 48/304 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F    T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLKKIKLAGFKSFVDPTSIPFVDDMTAIVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS +            F +T  R++G      +IS+K     D       +N+
Sbjct: 61  MIDVIFNGSTARKPVSQCTVELVFDNTSGRIQGEFASYNEISVKRLVTKDGQS-SYFLNN 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   R+F   +       ERRR 
Sbjct: 120 SKCRRRDVTDLFLGTGLGPRSYAIIEQGTISRLIESKPQELRVFIEEAAGISKYKERRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
            +  +         R+ D    +  + + L +    +     ++ Q  +   ++   R  
Sbjct: 180 TENRIRHTKEN-LERLEDVRGELGAQLQKLEKQASAAKKYKELKQQERQYRNELAAMRWS 238

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
             NA    + +   ++             D K    +   ++E  ++L      D+    
Sbjct: 239 NFNAKIVSLEQQTHQQEADLEAFIARQRGDEKEITVYRTRQQELKQQL-----QDTQQGY 293

Query: 264 TLIG 267
             +G
Sbjct: 294 FRLG 297



 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A  +L       AP  LLDE+ A LD+       ++
Sbjct: 1057 GKKNSTIHLLSGGEKALTALSLVFAIFQL-----NPAPFCLLDEVDAPLDDANVGRFCKL 1111

Query: 338  VTDIGSQI-FM 347
            V+++ + + F+
Sbjct: 1112 VSEMSTSVQFI 1122


>gi|304440274|ref|ZP_07400164.1| DNA repair protein RecN [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371323|gb|EFM24939.1| DNA repair protein RecN [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 554

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     + + F     I  G+ G GK+ I++A+S +  G+     +Y ++ +
Sbjct: 2   LLELKIQNFAIIDDVTIEFTDGLNILTGETGSGKSIIIDALSTVLGGK-----AYKEMIK 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            G  S +         E + +    L    +  V   +I  +    +  +N 
Sbjct: 57  AGCESAYVEAVFSTSSEQIKNKIKNLGIEIEDLVVINRIIKLDRPSISRING 108


>gi|300865739|ref|ZP_07110502.1| DNA repair protein RecN [Oscillatoria sp. PCC 6506]
 gi|300336270|emb|CBN55652.1| DNA repair protein RecN [Oscillatoria sp. PCC 6506]
          Length = 619

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 78/247 (31%), Gaps = 40/247 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F    SL + F     +F G+ G GK+ IL+A+     G+           R
Sbjct: 2   LLSLRIENFALIDSLNIDFGPGLNVFTGETGAGKSIILDALDATLGGK-----IDRRAIR 56

Query: 67  IGSPSF--------------FSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIR 111
            G+                 +     +E ++G LA  S +L           ++N +++ 
Sbjct: 57  TGTARAILEATFELDRSAVQWLNEQEIELIDGNLAVCSRELTAASGAFRSRSRLNGILVN 116

Query: 112 VV--DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
               D+L    R+  +      +  G    +R +LD    +    HR+ +       +  
Sbjct: 117 RQLMDQLRD--RLVEITAQGQTVQLGQPALQREWLDFYGGSELINHRQAVAAAYTAAQQA 174

Query: 170 NRLLTEGYFDSSW----CSSIEAQMAELGV------------KINIARVEMINALSSLIM 213
              LT               +E Q+ ELG             +    R+  I  L     
Sbjct: 175 AAALTRRRQSEQQRLQRLDLLEYQVRELGEANLSQPDEQEQLEQERTRLAHIVELQEKSY 234

Query: 214 EYVQKEN 220
           +  Q   
Sbjct: 235 KIYQALY 241


>gi|296100985|ref|YP_003611131.1| ATP-dependent OLD family endonuclease [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
 gi|295055444|gb|ADF60182.1| ATP-dependent OLD family endonuclease [Enterobacter cloacae
          subsp. cloacae ATCC 13047]
          Length = 579

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-------GFR 57
          +K++ + I  FR   +  +  +   T  +G N +GK+ +L+AI  L            FR
Sbjct: 1  MKLERIEIQNFRGIGTASINLE-NFTTLIGSNNIGKSTVLKAIKILVDTTNPTTEDWPFR 59

Query: 58 RASYADVT 65
          +AS  ++ 
Sbjct: 60 QASDGELI 67


>gi|288926242|ref|ZP_06420168.1| DNA repair protein RecN [Prevotella buccae D17]
 gi|288337021|gb|EFC75381.1| DNA repair protein RecN [Prevotella buccae D17]
          Length = 554

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 24/206 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F      R+ F    ++  G+ G GK+ IL AI  L    +  +  R  +  
Sbjct: 2   LKQLYIKNFTLIDEERIDFGPGFSVITGETGAGKSIILGAIGLLLGNRAGSKAVRAGADR 61

Query: 63  DVTRIGSP----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDEL 116
            V          +    F+  +  E LAD  I+ E       R   IND  +   ++ EL
Sbjct: 62  CVIEAHFDLTNYAMGDFFSCNDIDEDLADTIIRRELSAAGKSRAF-INDTPVSLSLMREL 120

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP--RHRRRMIDFER------LMRG 168
            + L    +      +       +   +D +         +      + +       ++ 
Sbjct: 121 GEQL--VDIHSQHQNLLLQKEDFQLNVVDIIAADGKALDDYHTAYARYRKTETELDALK- 177

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG 194
             R + E   +  +      ++A+  
Sbjct: 178 --RQIEEARTNEEFLRFQYNELAKAA 201


>gi|288935594|ref|YP_003439653.1| SMC domain protein [Klebsiella variicola At-22]
 gi|288890303|gb|ADC58621.1| SMC domain protein [Klebsiella variicola At-22]
          Length = 362

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I+++ I  FR+   + L       I  G NG GK+NI  AI  L+
Sbjct: 2  IQYIRIQNFRSVRDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 45


>gi|257089393|ref|ZP_05583754.1| DNA repair protein recN [Enterococcus faecalis CH188]
 gi|256998205|gb|EEU84725.1| DNA repair protein recN [Enterococcus faecalis CH188]
          Length = 560

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 98/266 (36%), Gaps = 33/266 (12%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N++ ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +
Sbjct: 2   NKM-LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SS 55

Query: 63  DVTRIGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQIND 107
           D  R G+        FS     E  + L ++ I+ E          +   ++V  +    
Sbjct: 56  DYIRQGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRI 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDF 162
           V I  +  + ++L           +      ER       F  + + A+  ++ +   ++
Sbjct: 116 VNITNLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEY 172

Query: 163 ERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             L   +R R +   E             ++A     +     +++   + L       +
Sbjct: 173 RALEAKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIAD 231

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKE 245
                  +L G  D   D+   ++ E
Sbjct: 232 ALTISYAALNGEDDSSLDKIGTSMNE 257


>gi|152992321|ref|YP_001358042.1| DNA double-strand break repair protein [Sulfurovum sp. NBC37-1]
 gi|151424182|dbj|BAF71685.1| DNA double-strand break repair protein [Sulfurovum sp. NBC37-1]
          Length = 788

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + +  L++  ++ Y    L F    T  +G NG GK+ I +AI+F   G         + 
Sbjct: 1  MILTSLHMQNYKKYRDFSLDFAEGLTGIIGRNGSGKSTIFDAITFALYGD---VRGEKET 57

Query: 65 TRI 67
           R 
Sbjct: 58 IRY 60


>gi|38347960|ref|NP_941209.1| ATP/GTP-binding protein [Serratia marcescens]
 gi|157412119|ref|YP_001481460.1| ATP/GTP-binding protein [Escherichia coli APEC O1]
 gi|238910390|ref|ZP_04654227.1| ATP/GTP-binding protein [Salmonella enterica subsp. enterica
          serovar Tennessee str. CDC07-0191]
 gi|296105228|ref|YP_003615374.1| hypothetical protein ECL_04901 [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|38259437|emb|CAE51665.1| ATP/GTP-binding protein [Serratia marcescens]
 gi|99867144|gb|ABF67789.1| ATP/GTP-binding protein [Escherichia coli APEC O1]
 gi|295059687|gb|ADF64425.1| hypothetical protein ECL_04901 [Enterobacter cloacae subsp.
          cloacae ATCC 13047]
 gi|322614025|gb|EFY10961.1| hypothetical protein SEEM315_05513 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315996572]
 gi|322617917|gb|EFY14810.1| hypothetical protein SEEM971_14352 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-1]
 gi|322625469|gb|EFY22295.1| hypothetical protein SEEM973_11125 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-3]
 gi|322629934|gb|EFY26707.1| hypothetical protein SEEM974_18640 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 495297-4]
 gi|322632177|gb|EFY28928.1| hypothetical protein SEEM201_00619 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-1]
 gi|322636472|gb|EFY33179.1| hypothetical protein SEEM202_12061 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 515920-2]
 gi|322651304|gb|EFY47688.1| ATP/GTP-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. OH_2009072675]
 gi|322652781|gb|EFY49120.1| ATP/GTP-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. CASC_09SCPH15965]
 gi|322659083|gb|EFY55335.1| ATP/GTP-binding protein [Salmonella enterica subsp. enterica
          serovar Montevideo str. 19N]
 gi|322663215|gb|EFY59419.1| hypothetical protein SEEM801_21632 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 81038-01]
 gi|322668702|gb|EFY64855.1| hypothetical protein SEEM507_12264 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674494|gb|EFY70587.1| hypothetical protein SEEM877_18241 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 414877]
 gi|322678300|gb|EFY74361.1| hypothetical protein SEEM867_21154 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 366867]
 gi|322682443|gb|EFY78464.1| hypothetical protein SEEM180_21589 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 413180]
 gi|322684156|gb|EFY80162.1| hypothetical protein SEEM600_11817 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 446600]
 gi|323192288|gb|EFZ77520.1| hypothetical protein SEEM581_18817 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609458-1]
 gi|323196285|gb|EFZ81437.1| hypothetical protein SEEM501_13820 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556150-1]
 gi|323201433|gb|EFZ86499.1| hypothetical protein SEEM460_09751 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 609460]
 gi|323206457|gb|EFZ91418.1| hypothetical protein SEEM020_01670 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 507440-20]
 gi|323212049|gb|EFZ96876.1| hypothetical protein SEEM6152_17804 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 556152]
 gi|323216954|gb|EGA01677.1| hypothetical protein SEEM0077_14821 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB101509-0077]
 gi|323224368|gb|EGA08657.1| hypothetical protein SEEM0055_16609 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB110209-0055]
 gi|323228296|gb|EGA12427.1| hypothetical protein SEEM0052_07417 [Salmonella enterica subsp.
          enterica serovar Montevideo str. MB111609-0052]
 gi|323233436|gb|EGA17529.1| hypothetical protein SEEM3312_16404 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009083312]
 gi|323237102|gb|EGA21169.1| hypothetical protein SEEM5258_14422 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 2009085258]
 gi|323243683|gb|EGA27699.1| hypothetical protein SEEM1156_06828 [Salmonella enterica subsp.
          enterica serovar Montevideo str. 315731156]
 gi|323246075|gb|EGA30062.1| hypothetical protein SEEM9199_17932 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2009159199]
 gi|323250851|gb|EGA34729.1| hypothetical protein SEEM8282_20509 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008282]
 gi|323257652|gb|EGA41338.1| hypothetical protein SEEM8283_13285 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008283]
 gi|323261862|gb|EGA45429.1| hypothetical protein SEEM8284_05562 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008284]
 gi|323266082|gb|EGA49573.1| hypothetical protein SEEM8285_00020 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008285]
 gi|323268626|gb|EGA52093.1| hypothetical protein SEEM8287_06807 [Salmonella enterica subsp.
          enterica serovar Montevideo str. IA_2010008287]
 gi|323974955|gb|EGB70065.1| 6 ATP/GTP-binding protein [Escherichia coli TW10509]
          Length = 608

 Score = 50.7 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++++ L +  FR Y +   ++ D   T  VG N  GK+ +LEA++  
Sbjct: 1  MRLRKLKLKNFRGYRNSTEIIIDESMTGIVGRNDFGKSTLLEALAIF 47


>gi|317034038|ref|XP_001395875.2| structural maintenance of chromosomes 5 smc5 [Aspergillus niger CBS
           513.88]
          Length = 1362

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 3/114 (2%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + +++F  Y S       +  + +G NG GK+ ++ AI   L  G     R     
Sbjct: 287 AIVRIRVTDFVTYTSAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDTG 346

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           +  + G                  +  +    + D +     IN         L
Sbjct: 347 EFVKHGCREATIEIELAGKPGSRHNPVVSRTIKRDGNKSTFTINGKQASRSQVL 400


>gi|296192042|ref|XP_002743894.1| PREDICTED: structural maintenance of chromosomes protein 1B-like,
          partial [Callithrix jacchus]
          Length = 205

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  S  
Sbjct: 3  HLELLFVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKAANLRVKSIQ 62

Query: 63 DVTR 66
          ++  
Sbjct: 63 ELIH 66


>gi|282900535|ref|ZP_06308479.1| Exonuclease SbcC [Cylindrospermopsis raciborskii CS-505]
 gi|281194588|gb|EFA69541.1| Exonuclease SbcC [Cylindrospermopsis raciborskii CS-505]
          Length = 1005

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 9  FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L +  F +Y    L F   HT    G NG GK+++LE+I++   G+  R     DV   
Sbjct: 5  RLILKNFLSYRDATLDFTGLHTACICGPNGAGKSSLLESITWAIWGQS-RANIEDDVIYA 63

Query: 68 GSPSFFSTFARVEGMEGLADISIK 91
          GS      F      +    I  +
Sbjct: 64 GSQEVRVDFTFYNNSQKYRVIRTR 87


>gi|221056841|ref|XP_002259558.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|193809630|emb|CAQ40331.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 1669

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
           KI  L I  F N+ +L + F++   I +G NG GK+ I +A++ 
Sbjct: 251 KIIKLRIRNFLNHENLEMSFNSNKNIIIGKNGKGKSAIAQAVAV 294


>gi|126647910|ref|XP_001388064.1| SMC2 protein [Cryptosporidium parvum Iowa II]
 gi|126117152|gb|EAZ51252.1| SMC2 protein [Cryptosporidium parvum Iowa II]
          Length = 1236

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          + I+ + +  F++Y    +   F+ +     G NG GK+NIL++I F   ++     R  
Sbjct: 1  MYIEEIILDGFKSYQKRTVIGKFNPKFNAITGLNGSGKSNILDSICFVLGITNLSQIRIN 60

Query: 60 SYADVT 65
             ++ 
Sbjct: 61 KLEELV 66


>gi|104782596|ref|YP_609094.1| hypothetical protein PSEEN3569 [Pseudomonas entomophila L48]
 gi|95111583|emb|CAK16303.1| hypothetical protein PSEEN3569 [Pseudomonas entomophila L48]
          Length = 608

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 57/408 (13%), Positives = 131/408 (32%), Gaps = 70/408 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++K + I  FR Y+    +     T  +G N +GK++ILEA+               + 
Sbjct: 1   MRLKTIAIKNFRCYSEKVTIPIEDLTTIIGKNDIGKSSILEALEIFFN---------NET 51

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             I         A +   +   +I  + E         + ++      + E  ++L  S 
Sbjct: 52  ITIEQGD-----ANISSEDKSVEICCEFENLPTP----ISLDSGAETSLSE--EYLLSSE 100

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDP---RHRRRMIDFERLMRGRNRLLT------- 174
               + +IF+     ++   +  + A  P        +   E+ ++ R + L        
Sbjct: 101 GTLKIQKIFNC--NNKKVTEEIFIIAQHPSTKGFENLLELKEKDLQARIKELKLDTPLKG 158

Query: 175 -EGYFDSSWCSSIEAQMAELG-----VKINIARV-EMINALSSLIMEYVQKENFPHIKLS 227
             G   + W ++ + Q++E        K +  R+ E I     L   +    +       
Sbjct: 159 NPGMRKALWAAAGDLQLSETAIPTGKAKEDTKRIWEQIEIHLPLFALFQSDRSSRDSDTE 218

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKM-DSMSRRTLIGPHRSDLI------------ 274
           +   +      +   ++++ A      ++  + ++ RT       D+             
Sbjct: 219 VQSPMKAAISAAIAEVQDDIANIQKKVQEKAEEIAHRTHEALKTLDINLANELTPEFSAP 278

Query: 275 ------------VDYCDKAITIAHGSTGEQKVVLVGIFLAHAR-LISNTTGFAPILLLDE 321
                       ++          GS G +++VLV  F A A   + + +  + I  ++E
Sbjct: 279 SPAKWTGLFSIGLNTDSGIPLNKRGS-GVRRLVLVSFFKAEAERRLKSGSRRSIIYAIEE 337

Query: 322 ISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLNETAKFM 365
                  + +  L      +    G Q+ +T         L   +   
Sbjct: 338 PETAQHPNNQRLLIESFKSLSTEPGCQVILTTHSPGFAAQLPSDSIRF 385


>gi|254239876|ref|ZP_04933198.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126193254|gb|EAZ57317.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
          Length = 1162

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 95/290 (32%), Gaps = 35/290 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   GS +    + A +E +   A+            I +  R  R       +N  
Sbjct: 61  MTDVIFNGSNTRKPVSQASIELIFDNAETTLVGEYAQYAEISIRRRVSRDGQNTYFLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               + R F++             +
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEARPEDLRNFIEE---------AAGI 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             ++   R     +     + +  + +  ++     +++               E   K 
Sbjct: 171 SKYKERRRETESRIRRTQENLARLTDLREELGRQLERLHRQAQSAEKYQEHKAEERQLKA 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
               ++        G+ ++     +  +   + + R  D+   R   G H
Sbjct: 231 QLGAVRWRDLNEQVGQRERVIGDQEVAFEALVAEQRGADAGIERLRDGHH 280


>gi|118581719|ref|YP_902969.1| chromosome segregation protein SMC [Pelobacter propionicus DSM
          2379]
 gi|118504429|gb|ABL00912.1| condensin subunit Smc [Pelobacter propionicus DSM 2379]
          Length = 1176

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +KIK L I  F+++A  + L F    T  VG NG GK+NI+++I +       +  R  +
Sbjct: 1  MKIKRLEICGFKSFADRVVLDFQQGVTGVVGPNGCGKSNIVDSIRWCMGEQSAKNLRGKA 60

Query: 61 YADVTRIGSP 70
            DV   GS 
Sbjct: 61 MEDVIFAGSE 70


>gi|262067036|ref|ZP_06026648.1| putative RecF/RecN/SMC N domain protein [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379245|gb|EFE86763.1| putative RecF/RecN/SMC N domain protein [Fusobacterium
           periodonticum ATCC 33693]
          Length = 1183

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           + +K + I+ F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++      
Sbjct: 1   MYLKAVEINGFKSFGEKVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60

Query: 63  --DVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G      +T A V  +   +D  +  +    +  R + I   
Sbjct: 61  SQDVIFSGGKEKKAATRAEVSLIIDNSDRYLDFDNDTVKITRRIHITGE 109


>gi|190341541|gb|ACE74847.1| RecN [Enterobacter hormaechei ATCC 49162]
          Length = 553

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 31/207 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGSPS-------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     +E   +  ++     D   R   IN   V + 
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEANQLEDGRECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +  ++      +++  LD       +  +   H R+     R +
Sbjct: 116 QLRELGQLLIQIHGQHAHQQLIK--PEQQKALLDGYAGEYALTQLMAEHYRQWHQSCREL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               +   E    +        Q+ EL
Sbjct: 174 AQHQQQSQERTARAELLEY---QLKEL 197


>gi|254429399|ref|ZP_05043106.1| DNA repair protein RecN [Alcanivorax sp. DG881]
 gi|196195568|gb|EDX90527.1| DNA repair protein RecN [Alcanivorax sp. DG881]
          Length = 555

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 65/209 (31%), Gaps = 26/209 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  F     L L  +   T+  G+ G GK+ I++A+      R     + + + R
Sbjct: 2   LTHLSVRHFATVDQLELEPENGLTVISGETGAGKSVIIDALGLTLGDR-----ADSSIVR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLADISIKLETR--DDRSVR-----CLQIND--VVIRV 112
            G         F     +   + LA+  +  E +    R+VR        +N     +  
Sbjct: 57  HGHDRAEVLATFDVSNNLAARQWLAERELDDEEQCLLRRTVRADGRSRAYVNGTPTPLAE 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           V EL + L           +    +   R+ LD    A D       H R      R   
Sbjct: 117 VRELGERLISIHSQHEHQALLKKDA--HRQLLDNFADARDLANSVREHWRHWQKARRAHD 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
                  E             ++  L ++
Sbjct: 175 EALNQAREQNEKEELLRFQLEELDALALQ 203


>gi|153001198|ref|YP_001366879.1| chromosome segregation protein SMC [Shewanella baltica OS185]
 gi|151365816|gb|ABS08816.1| chromosome segregation protein SMC [Shewanella baltica OS185]
          Length = 1138

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 32/225 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ F    T  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPFLQALTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND 107
            ADV   GS +            F +   R+ G     +  I ++ +  R       +N 
Sbjct: 61  MADVIFNGSSARKPVSVAGVELIFENKDGRLAGQYASYE-EIAVKRQVSRDGESWYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++        R++ R
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAG--ISRYKER 176

Query: 159 MIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
             +   R+   R  L   G   S     ++ ++A+        R 
Sbjct: 177 RRETENRIRHTRENLERLGDIRSELGKQLD-KLAQQAKAAKQYRE 220



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 32/175 (18%)

Query: 197  INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            ++  R +++  L ++ +  +++      + S     D   ++    L+E   K   + R 
Sbjct: 924  LDQIRQKIV-RLGAINLAAIEEFEQQSERKSYLDHQDDDLNKGLATLEEAIRKIDKETRS 982

Query: 257  M----------DSMS--------RRTLIGPHRSDLIVDY--------CDKAITIAHGSTG 290
                       D            R  +     DL+             K  TI   S G
Sbjct: 983  RFKTTFDSVNEDLGRLFPKVFGGGRAYLALTDDDLLETGVTIMAQPPGKKNSTIHLLSGG 1042

Query: 291  EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
            E+ +  + +  A  RL       AP  +LDE+ A LD+       R++ ++   +
Sbjct: 1043 EKALTALSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVERFCRLLKEMSQSV 1092


>gi|149181867|ref|ZP_01860356.1| DNA repair protein (recombination protein N) [Bacillus sp. SG-1]
 gi|148850406|gb|EDL64567.1| DNA repair protein (recombination protein N) [Bacillus sp. SG-1]
          Length = 567

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I  F     L +  +   T+  G+ G GK+ I++A+  L  GRG      ++  R
Sbjct: 2  LQELSIKNFAIIDELTVSIEEGLTVLTGETGAGKSIIIDAVHLLVGGRG-----SSEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G        A +EG+
Sbjct: 57 HGEKK-----AEIEGL 67


>gi|149173803|ref|ZP_01852432.1| chromosome segregation SMC protein [Planctomyces maris DSM 8797]
 gi|148847333|gb|EDL61667.1| chromosome segregation SMC protein [Planctomyces maris DSM 8797]
          Length = 1307

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 7   IKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62
           +K L +  F+++A   +  F    T  VG NG GK+N+++ I   L     +  R     
Sbjct: 2   LKSLELFGFKSFADRTIFEFSDGITCVVGPNGSGKSNVVDGIKWVLGDQSPKSLRGKDMT 61

Query: 63  DVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           DV   GS     + +A            + ++  + +  R L  N 
Sbjct: 62  DVIFNGSAGRKANAYAEATLTFNNRQGFLDIDADEVQIGRRLWKNG 107


>gi|146421124|ref|XP_001486513.1| hypothetical protein PGUG_02184 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1183

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RR 58
           +R+ I  L ++ F++YA  ++   F+A  +  VG NG GK+N+++++ F+   R    R+
Sbjct: 135 SRLVISQLVLTNFKSYAGQQVIGPFNASFSAVVGPNGSGKSNVIDSMLFVFGFRALKMRQ 194

Query: 59  ASYADVTRIGSPSFFSTFARVE 80
              +++    +      F +V+
Sbjct: 195 GKLSELIHNSAGGEKLDFCQVD 216


>gi|107100958|ref|ZP_01364876.1| hypothetical protein PaerPA_01001988 [Pseudomonas aeruginosa PACS2]
          Length = 1162

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 95/290 (32%), Gaps = 35/290 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   GS +    + A +E +   A+            I +  R  R       +N  
Sbjct: 61  MTDVIFNGSNTRKPVSQASIELIFDNAETTLVGEYAQYAEISIRRRVSRDGQNTYFLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               + R F++             +
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEARPEDLRNFIEE---------AAGI 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             ++   R     +     + +  + +  ++     +++               E   K 
Sbjct: 171 SKYKERRRETESRIRRTQENLARLTDLREELGRQLERLHRQAQSAEKYQEHKAEERQLKA 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
               ++        G+ ++     +  +   + + R  D+   R   G H
Sbjct: 231 QLGAVRWRDLNEQVGQRERVIGDQEVAFEALVAEQRGADAGIERLRDGHH 280


>gi|94733235|emb|CAK04581.1| chondroitin sulfate proteoglycan 6 (bamacan) [Danio rerio]
 gi|94733720|emb|CAK04291.1| chondroitin sulfate proteoglycan 6 (bamacan) [Danio rerio]
          Length = 1216

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTVVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEDEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  S+R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSSKRETCG 250



 Score = 38.3 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QI 345
            S G++ +V + +  A           AP  L DEI   LD   R A+  ++ ++    Q 
Sbjct: 1115 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAGHAQF 1169

Query: 346  FMTGTDKSVFDS 357
              T     + +S
Sbjct: 1170 ITTTFRPELLES 1181


>gi|321470665|gb|EFX81640.1| hypothetical protein DAPPUDRAFT_211085 [Daphnia pulex]
          Length = 1217

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          ++K++ +  F++Y    R+      +  +G NG GK+N ++A+SF+   +    R     
Sbjct: 7  RLKYIEVDNFKSYKDFQRIGPFENFSAVIGPNGSGKSNFMDAVSFVMGEKSSTLRVKRLT 66

Query: 63 DVTR 66
          ++  
Sbjct: 67 ELIH 70


>gi|313674195|ref|YP_004052191.1| chromosome segregation protein smc [Marivirga tractuosa DSM 4126]
 gi|312940893|gb|ADR20083.1| chromosome segregation protein SMC [Marivirga tractuosa DSM 4126]
          Length = 1182

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
          +++  L I  F+++   + + FD   T  VG NG GK+N+++AI   L   +    R   
Sbjct: 1  MQLTKLEIKGFKSFGDRMVINFDKGITGIVGPNGCGKSNVVDAIRWVLGEQKSRMLRSDK 60

Query: 61 YADVTRIGSP 70
            +V   G+ 
Sbjct: 61 MENVIFNGTK 70


>gi|307322482|ref|ZP_07601833.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306891873|gb|EFN22708.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
          Length = 675

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
          +++  +++  FR    + ++ + + T+ VG N  GKT++ E +  L   +   FR
Sbjct: 1  MQLHKISVKNFRLLHDVEVLLEPRTTVIVGRNNCGKTSLTEVVKRLLHDKTAVFR 55


>gi|301025526|ref|ZP_07189056.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|299880064|gb|EFI88275.1| conserved hypothetical protein [Escherichia coli MS 196-1]
          Length = 548

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++++ L +  FR Y +   ++ D   T  VG N  GK+ +LEA++  
Sbjct: 1  MRLRKLKLKNFRGYRNSTEIIIDESMTGIVGRNDFGKSTLLEALAIF 47


>gi|255535167|ref|YP_003095538.1| hypothetical protein FIC_01026 [Flavobacteriaceae bacterium
           3519-10]
 gi|255341363|gb|ACU07476.1| hypothetical protein FIC_01026 [Flavobacteriaceae bacterium
           3519-10]
          Length = 357

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 125/355 (35%), Gaps = 38/355 (10%)

Query: 21  LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVE 80
           L L F++   +  G NG  KT +L+ I +L      R  S             +   +++
Sbjct: 17  LNLQFNSDLNLLTGKNGSSKTTLLKLIWYL---NSARINSLIKEVNFTRAIITTDNYKLD 73

Query: 81  GMEGLADISIKLETRDDRSVRCLQIN------DVVIRVVDELNKHLRIS---WLVPSMDR 131
             +      + +   D++S      N         IR+ ++LN  ++ S      P+  R
Sbjct: 74  LTKDSESRYVNISINDEKSFTLSDQNLRELDYRRPIRINEKLNIIIKNSIPTIFFPTFRR 133

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
           I  G SM+  +F    +F  +   R  + +  R +  RN+            + + ++  
Sbjct: 134 IEGGFSMDNNQF--DPLFGRNDEVRDALEELSRKLSFRNQRFITSISTDDIVALLNSEYT 191

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
            +  KIN  + +  + +   I + +Q E     K +L        D       E   +KL
Sbjct: 192 NINSKINNTQKQKSDEIIRKIKDKIQDE-----KQTLENIKKDIED------MESEREKL 240

Query: 252 FDGRKMDSMSRRTLI---GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
                  S    T+    G + S+L +   + AI+    S GE++++             
Sbjct: 241 LKPFTTLSNLISTIFHHKGINLSNLTIGEVNNAISSDKLSAGEKQMLSFIC--------Y 292

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGTDKSVFDSLNET 361
           N       + +DE    L  D +  L   +   D  +Q FM      +F    + 
Sbjct: 293 NAFTKNHTIFIDEPELSLHPDWQRTLVPTLLNQDSNNQFFMATHSPFIFSKYADK 347


>gi|34496735|ref|NP_900950.1| hypothetical protein CV_1280 [Chromobacterium violaceum ATCC
          12472]
 gi|34102590|gb|AAQ58955.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
          12472]
          Length = 364

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  L+++ FR+   L L  DA   + VG NG GK+N+ ++I  L
Sbjct: 1  MPIHSLSLAGFRSIRKLTLELDA-LNVVVGANGCGKSNLYKSIQLL 45


>gi|24649575|ref|NP_651228.1| CG5524 [Drosophila melanogaster]
 gi|7301120|gb|AAF56254.1| CG5524 [Drosophila melanogaster]
 gi|71834166|gb|AAZ41755.1| SD25546p [Drosophila melanogaster]
          Length = 1122

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           K+  + ++ F  +++L + F       VG+NG GK+ ++ A++ L      R  + A   
Sbjct: 98  KVISMRLTNFMCHSNLFIEFGPNINFLVGNNGSGKSAVITALA-LGLTSSARATNRASSI 156

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           +            ++  E  A ISI L     R  + 
Sbjct: 157 QK----------LIKNGEVSATISITLSNSGLRPFKA 183


>gi|332706943|ref|ZP_08427003.1| DNA replication and repair protein RecN [Lyngbya majuscula 3L]
 gi|332354208|gb|EGJ33688.1| DNA replication and repair protein RecN [Lyngbya majuscula 3L]
          Length = 608

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 60/206 (29%), Gaps = 24/206 (11%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG----RGFRR------- 58
           L I  F     L + F A   +  G+ G GK+ IL+AI     G    R  R        
Sbjct: 5   LRIHNFALIDHLEVEFGAGLNVLTGETGAGKSIILDAIDIALGGKVTNRLIRTGTKRALL 64

Query: 59  ----ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
               +    +    S        + + +      + +   R    V    +N  ++  + 
Sbjct: 65  EATFSVDNPLIAWLSEQEIDLLDQADLVCSREITATEKGMRSRSRVNGTIVNRQLMEGLR 124

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERLMRGRN 170
           E     R+  +      I   +   +R  LD     +V     R     I F+   +   
Sbjct: 125 E-----RLVEITAQGQTIQLIMPARQRGLLDLYGGSLVIQQRDRVASAYIAFQEAKKALE 179

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVK 196
                          +E Q+ +L   
Sbjct: 180 TQQKSQQERLQRLDWLEYQIQDLSAA 205


>gi|326800666|ref|YP_004318485.1| chromosome segregation protein SMC [Sphingobacterium sp. 21]
 gi|326551430|gb|ADZ79815.1| chromosome segregation protein SMC [Sphingobacterium sp. 21]
          Length = 1181

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          +++  L I  F+++   + + F+   T  VG NG GK+N+++AI   L     +  R   
Sbjct: 1  MQLTRLEIKGFKSFGDKITINFNEGVTAIVGPNGCGKSNVVDAIRWVLGEQRTKNLRSEK 60

Query: 61 YADVTRIGSP 70
            ++   G+ 
Sbjct: 61 MENIIFNGTK 70


>gi|308509448|ref|XP_003116907.1| hypothetical protein CRE_02183 [Caenorhabditis remanei]
 gi|308241821|gb|EFO85773.1| hypothetical protein CRE_02183 [Caenorhabditis remanei]
          Length = 577

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 5  IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRA 59
          + IK + +  F++Y     +  F  Q     G NG GK+N+L++I F+         R  
Sbjct: 1  MYIKTILLDGFKSYQKPTEIKGFSPQFNAITGYNGSGKSNVLDSICFILGINKLDNIRAK 60

Query: 60 SYADVTRIG 68
          S +++   G
Sbjct: 61 SMSELISHG 69


>gi|298252087|ref|ZP_06975890.1| chromosome segregation protein SMC [Ktedonobacter racemifer DSM
           44963]
 gi|297546679|gb|EFH80547.1| chromosome segregation protein SMC [Ktedonobacter racemifer DSM
           44963]
          Length = 1258

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 13/125 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           + +K L +  F+++AS   L F    T  VG NG GK+N+ +A+ ++      R  R   
Sbjct: 1   MYLKRLEMLGFKSFASRTVLEFSPGITAVVGPNGSGKSNVADAMRWVLGEQNMRQLRGKK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVIR 111
             D+  +G               ++   G         T   RS R       IN   +R
Sbjct: 61  SDDIIFVGGQGKAALGMAEVSLTIDNSTGWVPSDYSEITVTRRSFRSGENEYLINKQKVR 120

Query: 112 VVDEL 116
           + D L
Sbjct: 121 LKDVL 125


>gi|303315129|ref|XP_003067572.1| Chromosome segregation protein sudA , putative [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240107242|gb|EER25427.1| Chromosome segregation protein sudA , putative [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1199

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 92/281 (32%), Gaps = 22/281 (7%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM-DRIFSGL 136
            + E    L ++S  +E    R  + +Q    + +   E + ++R   ++P      F   
Sbjct: 891  KAEIRRELDELSKSIERHQRRMEKSMQKKAALTKQATECSANIRALGVLPDEAFTKFKNA 950

Query: 137  SME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
                   R   ++  +      +++    +    + R  L+       +   SI+  +  
Sbjct: 951  DSNTVVKRLHKVNEALKKYSHVNKKAFEQYNNFTKQRETLMKRREELDASHKSIDELIMI 1010

Query: 193  LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
            L  + + A       +S    +      F  +  +  G L  +        +++      
Sbjct: 1011 LDQRKDEAIERTFKQVSREFAKI-----FEKLVPAGRGRLIIQRKTDPTN-RQDDDIDSD 1064

Query: 253  DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
            +     S+     +G   S       D+   I   S G++ +  + +  A          
Sbjct: 1065 EEEARRSVENYVGVGISVS--FNSKHDEQQRIQQLSGGQKSLCALALVFA-----IQACD 1117

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
             AP  L DEI A+LD   R A+ +++     +   Q   T 
Sbjct: 1118 PAPFYLFDEIDANLDAQYRTAVAQMLKSISEETNGQFICTT 1158



 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + +K + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MFVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47


>gi|207724059|ref|YP_002254457.1| hypothetical protein RSMK01485 [Ralstonia solanacearum MolK2]
 gi|206589268|emb|CAQ36230.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 385

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +  L +  +RN+  L +   ++ T  +G N  GK+N+L+   FL
Sbjct: 1  MLVTRLRLKNWRNFKHLDVQLRSR-TYIIGANASGKSNLLDVFRFL 45


>gi|330895391|gb|EGH27729.1| SMC domain-containing protein [Pseudomonas syringae pv. japonica
          str. M301072PT]
          Length = 640

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 6  KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY-AD 63
          K+  + +S  R + A + +      TI +  NG GKT + EAI F   G+  R     A 
Sbjct: 3  KLNSITLSNLRKFGADVTIELSPGATILLAPNGTGKTTVFEAIEFGLTGKVARLRDDIAH 62

Query: 64 VTRIGSPSFFS 74
          + R    +   
Sbjct: 63 IIRDDQTAAAV 73


>gi|329919884|ref|ZP_08276822.1| DNA repair protein RecN [Lactobacillus iners SPIN 1401G]
 gi|328936974|gb|EGG33404.1| DNA repair protein RecN [Lactobacillus iners SPIN 1401G]
          Length = 559

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 79/211 (37%), Gaps = 35/211 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F    T+ +G+ G GK+ I++A+S L   R     +  D+ R
Sbjct: 2   LVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSR-----AQIDMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F+  +  + L D+ I+     D            +    ++IN     I
Sbjct: 57  SGESKAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTI 116

Query: 111 RVVDELNKHL-------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            V+  L+++L        +  L+     I    +     F D  +      + +   +  
Sbjct: 117 NVLKNLSQYLVDIHGQRDMQILMDQDLHINLLDNYANNDFKD-SLCQYQKIYAK-WQE-- 172

Query: 164 RLMRGRNRLLTEGYFDSSWC-SSIEAQMAEL 193
             ++ R   + +   + +     +E Q+ EL
Sbjct: 173 --IKQRLSAIRKNAQEIAQKHDILEYQLNEL 201


>gi|255524261|ref|ZP_05391220.1| chromosome segregation protein SMC [Clostridium carboxidivorans P7]
 gi|296185383|ref|ZP_06853793.1| chromosome segregation protein SMC [Clostridium carboxidivorans P7]
 gi|255512086|gb|EET88367.1| chromosome segregation protein SMC [Clostridium carboxidivorans P7]
 gi|296050217|gb|EFG89641.1| chromosome segregation protein SMC [Clostridium carboxidivorans P7]
          Length = 1188

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 21/162 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++A    LVF       VG NG GK+NI +A+   L     +  R   
Sbjct: 1   MFLKSMEIRGFKSFADKTELVFKNGIMGIVGPNGSGKSNISDAVRWVLGEQSVKSLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSVRC-LQINDVVIR 111
             DV   G+              ++  +    +    I +  R  RS      IN+   R
Sbjct: 61  MEDVIFAGTQFRKPVGLCQVSLTLDNEDKKLPLDYAYITISRRLYRSGESEYYINNTQCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + D         + K          ++ + SG   ERR  L+
Sbjct: 121 LKDIQQLFMDTGIGKEGYSIIGQGKIEAVLSGKPEERRSLLE 162


>gi|295672530|ref|XP_002796811.1| conserved hypothetical protein [Paracoccidioides brasiliensis
          Pb01]
 gi|226282183|gb|EEH37749.1| conserved hypothetical protein [Paracoccidioides brasiliensis
          Pb01]
          Length = 1298

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|190341507|gb|ACE74830.1| RecN [Enterobacter cancerogenus]
          Length = 553

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 31/207 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGSPS-------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     +E   +  ++     D   R   IN   V + 
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEANQLEDGRECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +  ++      +++  LD       +  +   H R+     R +
Sbjct: 116 QLRELGQLLIQIHGQHAHQQLIK--PEQQKALLDGYAGEYALTQLMAEHYRQWHQSCREL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               +   E    +        Q+ EL
Sbjct: 174 AQHQQQSQERTARAELLEY---QLKEL 197


>gi|121611086|ref|YP_998893.1| hypothetical protein Veis_4170 [Verminephrobacter eiseniae EF01-2]
 gi|121555726|gb|ABM59875.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
          Length = 399

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS---- 60
           ++I+ + I  +R +   +L    +  + VG NG GK+ + +  SFL        A     
Sbjct: 1   MQIESIAIKNYRLFRDAKLENIPRLCVLVGANGTGKSTLFDVFSFLKDALSMNVAKALAK 60

Query: 61  ---YADVTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-VV 113
              Y +V   G    P   +   R+E       ++  L+ R D+      +   ++R   
Sbjct: 61  RGGYREVASRGFANEPIEITLQFRLEITGYDRLVTYALKIRPDKKSGRPVVEREILRYKR 120

Query: 114 DELNKHLRISWLV 126
                  R     
Sbjct: 121 GAYGAPFRFLDFS 133


>gi|255974053|ref|ZP_05424639.1| DNA repair protein RecN [Enterococcus faecalis T2]
 gi|255966925|gb|EET97547.1| DNA repair protein RecN [Enterococcus faecalis T2]
          Length = 560

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 98/266 (36%), Gaps = 33/266 (12%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N++ ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +
Sbjct: 2   NKM-LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SS 55

Query: 63  DVTRIGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQIND 107
           D  R G+        FS     E  + L ++ I+ E          +   ++V  +    
Sbjct: 56  DYIRQGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRI 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDF 162
           V I  +  + ++L           +      ER       F  + + A+  ++ +   ++
Sbjct: 116 VNITNLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEY 172

Query: 163 ERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             L   +R R +   E             ++A     +     +++   + L       +
Sbjct: 173 RALEAKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIAD 231

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKE 245
                  +L G  D   D+   ++ E
Sbjct: 232 ALTISYAALNGEDDSSLDKIGTSMNE 257


>gi|303271873|ref|XP_003055298.1| condensin complex component [Micromonas pusilla CCMP1545]
 gi|226463272|gb|EEH60550.1| condensin complex component [Micromonas pusilla CCMP1545]
          Length = 1335

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
          I+ +    F++Y     +    Q T  +G NG GK+N+++AISF+   +    R     D
Sbjct: 29 IQRIECDNFKSYKGHQVIGPFKQFTSIIGPNGSGKSNLMDAISFVLGVQSAQLRGTQLKD 88

Query: 64 VT 65
          + 
Sbjct: 89 LV 90


>gi|168333988|ref|ZP_02692212.1| chromosome segregation protein SMC [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 1183

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + ++ + I  F+++  ++++   +  T  +G NG GK+N+ +AI   L     +  R   
Sbjct: 1   MYLEKIEIFGFKSFGDAVKIAVPSGITAIIGPNGSGKSNVADAIRWVLGEQSAKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSVRC-LQINDVVIR 111
             DV  +G+       +      ++  E    IS   ++++ R  RS      IN+   R
Sbjct: 61  MEDVIFVGTETRKPMGYAEVALYIKNDEDDLKISYSDLEIKRRVYRSGESEYFINNANCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LRD 123


>gi|167949865|ref|ZP_02536939.1| Chromosome segregation protein SMC [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 121

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 13/114 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++++ + ++ F+++     +   +     VG NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLEKIKLAGFKSFVDPTTVPMPSNLVGIVGPNGCGKSNVIDAVRWVMGESSAKMLRGES 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVV 113
            ADV   GS S            G A I +  +  + R   +  Q N + ++  
Sbjct: 61  MADVIFNGSSS--------RKPVGTATIELLFDNAEGRAGGQYAQYNQISVKRQ 106


>gi|222056542|ref|YP_002538904.1| DNA repair protein RecN [Geobacter sp. FRC-32]
 gi|221565831|gb|ACM21803.1| DNA repair protein RecN [Geobacter sp. FRC-32]
          Length = 553

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 16/129 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I       SL + F     I  G+ G GK+ I++A++ +  GRG      AD+ R
Sbjct: 2   LTDLSIKNIAIIDSLTVSFRGGLNILTGETGAGKSIIIDAVNLILGGRG-----SADLIR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            G+               S  A ++ +    D  + ++    RS +        +  +  
Sbjct: 57  AGAEEGVVEAIFDLSGRPSILAELDKIGIECDGELLIKRVVSRSGKNRVFIGGGLSTISI 116

Query: 116 LNKHLRISW 124
           L +  R+  
Sbjct: 117 LAEISRLLI 125


>gi|320161646|ref|YP_004174871.1| chromosome segregation protein SMC [Anaerolinea thermophila UNI-1]
 gi|319995500|dbj|BAJ64271.1| chromosome segregation protein SMC [Anaerolinea thermophila UNI-1]
          Length = 1202

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 100/281 (35%), Gaps = 29/281 (10%)

Query: 7   IKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           +K L +  ++ +AS  L  F    T  VG NG GK+NI +A+ ++   + F   R     
Sbjct: 4   LKSLELHGYKTFASRTLFEFPGMVTAIVGPNGSGKSNIADAVRWVLGEQSFSLLRGRKTE 63

Query: 63  DVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVIRVV 113
           D+   GS         S     +   G   I         R+ R       +N   +R +
Sbjct: 64  DMIFSGSELRPRAGMASASILFDNESGWLPIDYSEVLITRRAYRDGSNEYLLNGQRVR-L 122

Query: 114 DELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRMIDF 162
            E+N+ L  S L      I               ERRRF +    +     R    +   
Sbjct: 123 KEINELLAQSGLAERTYTIIGQGLVDAALSLKPEERRRFFEEAAGIGLYRSRREEALHRL 182

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           +   R   R+L           S+E Q A+  ++    R ++   L      +  +    
Sbjct: 183 DTTRRNLERVLDILSELEPRLHSLEKQ-AKRAMEYEQIRADLRLLLRDWYGYHWHRVQR- 240

Query: 223 HIKLSLTGFL--DGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            + L+    L  + +F Q+   L EE  + +   ++++ + 
Sbjct: 241 ELTLAREALLAQEERFQQARDHLLEEEQRSVEIRQRLNELR 281


>gi|311113290|ref|YP_003984512.1| DNA repair protein RecN [Rothia dentocariosa ATCC 17931]
 gi|310944784|gb|ADP41078.1| DNA repair protein RecN [Rothia dentocariosa ATCC 17931]
          Length = 569

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 58/389 (14%), Positives = 122/389 (31%), Gaps = 66/389 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I I+ L I         RL      ++  G+ G GKT ++ A+  L   R      
Sbjct: 1   MIEEIHIRDLGI-----ITDARLPLQPGLSVLTGETGAGKTMVVTALGMLLGARS----- 50

Query: 61  YADVTRIGSPSFFS------------------TFARVEGMEGLADISIKLETRDDRSVRC 102
            A   R G+ S  +                      V+ ++      +   T +      
Sbjct: 51  DAASVRQGAKSALAEAIVRLPQEHKALTLAEEVGGTVDPVDEKTSELLLARTVNASGRSR 110

Query: 103 LQIND--VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHR 156
             +      +  + ++ + L         D++    + E+RR LD      +F +  +++
Sbjct: 111 AHVGGCTAPVGKLSDIGQTLVAV--HGQSDQLRLKSASEQRRALDLYAGEKLFDLLEKYQ 168

Query: 157 RRMIDFERLMRG--------RNRLLTEGYFDSSW--CSSIEAQMAELGVKINIARVEMIN 206
                +              R R L       +     S+  QM E    +    ++++N
Sbjct: 169 HTYERYRVAAAEYKEVRENSRARALEAQSLQGALEEIDSVNPQMGE-DEALKNESIKLMN 227

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL----FDGRKMDSMSR 262
                +             LS + + +G        L   +   L     D    +   R
Sbjct: 228 -----VEALRTATGVAAAALSGSEYTEGTEANVLSLLDAAHTSLLGQADADSDIENLAQR 282

Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD-- 320
              +    +D+  D      + +  S G +++  V    A  + ++   G     +L+  
Sbjct: 283 VNELLVLATDIATDIS--TYSTSLDSEGPERLAQVQERRAQLKTLTRKYGADIAEVLEWA 340

Query: 321 ----EISAHL--DEDKRNALFRIVTDIGS 343
               +   HL  D +++ +L + +TD+  
Sbjct: 341 EESRDRLTHLVDDPERQESLEQELTDLRQ 369


>gi|289666980|ref|ZP_06488055.1| hypothetical protein XcampmN_00215 [Xanthomonas campestris pv.
          musacearum NCPPB4381]
          Length = 554

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +K++ + + +F+   ++ L       I VG NG GK++IL+A+   S      R      
Sbjct: 1  MKLESIKVEKFKRIDAIELPITD-LNILVGSNGSGKSSILQALHLASCLM---RQVDR-- 54

Query: 65 TRIGSPSFFST 75
           R GS +  S 
Sbjct: 55 IRAGSTAMVSI 65


>gi|162454403|ref|YP_001616770.1| hypothetical protein sce6124 [Sorangium cellulosum 'So ce 56']
 gi|161164985|emb|CAN96290.1| hypothetical protein sce6124 [Sorangium cellulosum 'So ce 56']
          Length = 362

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ L+++ +R+   L L   AQ  + VG NGVGKTN+   +  L     
Sbjct: 1  MTVQELHVAGYRSIRELTLPL-AQVNVIVGPNGVGKTNLYRTMVLLGAAAS 50


>gi|83644084|ref|YP_432519.1| DNA repair protein RecN [Hahella chejuensis KCTC 2396]
 gi|83632127|gb|ABC28094.1| DNA repair protein RecN [Hahella chejuensis KCTC 2396]
          Length = 554

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 62/211 (29%), Gaps = 35/211 (16%)

Query: 7   IKFLNISEFRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +  L+I   RN A    L L F    T   G+ G GK+ +L+A+      R       AD
Sbjct: 2   LTHLSI---RNLAIASHLELDFAEGMTAISGETGAGKSIVLDALGLTLGDRS-----SAD 53

Query: 64  VTRIGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVRCL-QINDVVI- 110
           + R G      +            A ++  E        L        R    +N   + 
Sbjct: 54  IVRHGCERAEVSAVFDLRRLPEALAWLKSRELDNGAECILRRTVTHEGRSRGYLNGQPVT 113

Query: 111 -RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFER 164
            + + EL + L           +         + +D      +       H +       
Sbjct: 114 MQDLRELGETLMDIHSQHEHQSLLKK--ETHLKMVDDFGGHANQLQQVREHFQSWRRVAA 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
            ++ +   L+      +    +  Q+ EL  
Sbjct: 172 KLKEK---LSHSEEQEARVQLLTYQVEELDA 199


>gi|78222162|ref|YP_383909.1| DNA repair protein RecN [Geobacter metallireducens GS-15]
 gi|78193417|gb|ABB31184.1| DNA replication and repair protein RecN [Geobacter metallireducens
           GS-15]
          Length = 554

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 82/256 (32%), Gaps = 43/256 (16%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I  F    +L + F    T+F G+ G GK+ I++A++ +  GR     + AD+ R G+
Sbjct: 5   LSIRNFAIIDTLHVPFQPGLTVFTGETGAGKSIIIDAVNLIMGGR-----ASADLIRTGA 59

Query: 70  PSFFSTFARV-------------EGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDE 115
                                   G+E   ++ +K         R           ++ +
Sbjct: 60  EEATVEAVFALPEGSPLGARLADAGIECDGELLVKRVVSRSGRNRVFVGGGLSTQAILAD 119

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLD--RMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           + + L   +       +    +      LD    +  +   +     D+   +       
Sbjct: 120 MARELVNIYGQHESQTLLR--TDNHLTLLDGFGGLLPLRESYGALYADYRATLDQ----- 172

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
                      ++E      G +    R+++++  +S I E           L     L 
Sbjct: 173 ---------IRALEE-----GEREAARRLDLLSFQASEIREAALH-PGEDADLERERGLL 217

Query: 234 GKFDQSFCALKEEYAK 249
              ++   A +E YA 
Sbjct: 218 AHGEKLLFASQEAYAA 233


>gi|322375368|ref|ZP_08049881.1| DNA repair protein RecN [Streptococcus sp. C300]
 gi|321279631|gb|EFX56671.1| DNA repair protein RecN [Streptococcus sp. C300]
          Length = 555

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 80/208 (38%), Gaps = 25/208 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNLMLGAR-----ATTDVIR 56

Query: 67  IGSPS------FFSTFARV-------EGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+P       F    +RV       +G+E   +I I+ E  ++ RSV  +    V + V
Sbjct: 57  HGAPKAEIEGLFSVENSRVLQELFDEQGLEMGDEIIIRREILQNGRSVSRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +  + +HL    +    D+               F D     +   ++     + +  + 
Sbjct: 117 LRAIGQHL--VDIHGQHDQEELMRPQLHIQMLDEFGDVAFLELKETYQTSFDAYRKKRKQ 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVK 196
              +        +    +E QMAE+   
Sbjct: 175 VLEVKKNQQEHKARIEMLEFQMAEIEAA 202


>gi|224542482|ref|ZP_03683021.1| hypothetical protein CATMIT_01665 [Catenibacterium mitsuokai DSM
          15897]
 gi|224524596|gb|EEF93701.1| hypothetical protein CATMIT_01665 [Catenibacterium mitsuokai DSM
          15897]
          Length = 103

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          I  + I  +R Y    L  + +  + VG N  GK+ ++EA++    GR
Sbjct: 2  ITKIKIHGYRIYKKFELAPNKRLNLIVGANEAGKSTLIEALTLALTGR 49


>gi|119190459|ref|XP_001245836.1| hypothetical protein CIMG_05277 [Coccidioides immitis RS]
 gi|320035654|gb|EFW17595.1| chromosome segregation protein sudA [Coccidioides posadasii str.
            Silveira]
          Length = 1199

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 92/281 (32%), Gaps = 22/281 (7%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM-DRIFSGL 136
            + E    L ++S  +E    R  + +Q    + +   E + ++R   ++P      F   
Sbjct: 891  KAEIRRELDELSKSIERHQRRMEKSMQKKAALTKQATECSANIRALGVLPDEAFTKFKNA 950

Query: 137  SME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
                   R   ++  +      +++    +    + R  L+       +   SI+  +  
Sbjct: 951  DSNTVVKRLHKVNEALKKYSHVNKKAFEQYNNFTKQRETLMKRREELDASHKSIDELIMI 1010

Query: 193  LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
            L  + + A       +S    +      F  +  +  G L  +        +++      
Sbjct: 1011 LDQRKDEAIERTFKQVSREFAKI-----FEKLVPAGRGRLIIQRKTDPTN-RQDDDIDSD 1064

Query: 253  DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
            +     S+     +G   S       D+   I   S G++ +  + +  A          
Sbjct: 1065 EEEARRSVENYVGVGISVS--FNSKHDEQQRIQQLSGGQKSLCALALVFA-----IQACD 1117

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
             AP  L DEI A+LD   R A+ +++     +   Q   T 
Sbjct: 1118 PAPFYLFDEIDANLDAQYRTAVAQMLKSISEETNGQFICTT 1158



 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + +K + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MFVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47


>gi|54295457|ref|YP_127872.1| hypothetical protein lpl2543 [Legionella pneumophila str. Lens]
 gi|53755289|emb|CAH16783.1| hypothetical protein lpl2543 [Legionella pneumophila str. Lens]
          Length = 1164

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +K L ++ F+++     + F ++    VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1  MHLKQLKLAGFKSFVDPTTVHFPSRLVAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61 YADVTRIGSPS 71
            D+   GS +
Sbjct: 61 MTDIIFNGSSN 71


>gi|134111681|ref|XP_775376.1| hypothetical protein CNBE0920 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50258035|gb|EAL20729.1| hypothetical protein CNBE0920 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 1541

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
           +R+ I  L +  F++YA    +  F    +  VG NG GK+N ++A+ F+   R    R+
Sbjct: 242 SRLTIHKLVLVNFKSYAGRQEIGPFHKSFSAIVGPNGSGKSNTIDALLFVFGYRASKMRQ 301

Query: 59  ASYADVTRI--GSPSFFSTFARV 79
              +++     G  +  S    V
Sbjct: 302 GKLSELIHNSAGKENLESCSVEV 324


>gi|308190055|ref|YP_003922986.1| segregation of chromosomes protein [Mycoplasma fermentans JER]
 gi|319777349|ref|YP_004137000.1| p115-like abc transporter ATP-binding protein [Mycoplasma
           fermentans M64]
 gi|307624797|gb|ADN69102.1| segregation of chromosomes protein [Mycoplasma fermentans JER]
 gi|318038424|gb|ADV34623.1| P115-Like ABC transporter ATP-Binding Protein [Mycoplasma
           fermentans M64]
          Length = 991

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 14/124 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+  +    F+++A  + L FD      VG NG GK+NI +AI ++   R     R  +
Sbjct: 1   MKLIKVEAHGFKSFADPIVLKFDGGVAGIVGPNGSGKSNINDAIKWVLGERSAKELRGDN 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEG-----LADISIKLETRDDRSVRCLQINDVVI 110
             DV   GS +             +   G        ISI              +N    
Sbjct: 61  MDDVIFAGSKTAKPMDKAVVTLTFDNRNGISSIPHETISISRVLERGNGNNQYFLNGEPC 120

Query: 111 RVVD 114
           R  D
Sbjct: 121 RQKD 124


>gi|206890767|ref|YP_002249782.1| chromosome segregation SMC protein, putative [Thermodesulfovibrio
          yellowstonii DSM 11347]
 gi|206742705|gb|ACI21762.1| chromosome segregation SMC protein, putative [Thermodesulfovibrio
          yellowstonii DSM 11347]
          Length = 1148

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          ++IK++ ++ F+++    ++  +   T FVG NG GK+NI++A    L     R  R   
Sbjct: 1  MRIKWIELNGFKSFPERTKIELNEGITCFVGPNGAGKSNIIDAFRWVLGEHNPRILRGEK 60

Query: 61 YADVTRIG 68
            +V   G
Sbjct: 61 MEEVIFQG 68


>gi|195331556|ref|XP_002032467.1| GM23503 [Drosophila sechellia]
 gi|194121410|gb|EDW43453.1| GM23503 [Drosophila sechellia]
          Length = 1126

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           K+  + ++ F  +++L + F       VG+NG GK+ ++ A++ L      R  + A   
Sbjct: 102 KVISMRLTNFMCHSNLFIEFGPNINFLVGNNGSGKSAVITALA-LGLTSSARATNRASSI 160

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           +            ++  E  A ISI L     R  + 
Sbjct: 161 QK----------LIKNGEVSATISITLSNSGLRPFKA 187


>gi|52842826|ref|YP_096625.1| chromosome segregation SMC protein [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
 gi|52629937|gb|AAU28678.1| chromosome segregation SMC protein [Legionella pneumophila subsp.
          pneumophila str. Philadelphia 1]
          Length = 1164

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +K L ++ F+++     + F ++    VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1  MHLKQLKLAGFKSFVDPTTVHFPSRLVAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61 YADVTRIGSPS 71
            D+   GS +
Sbjct: 61 MTDIIFNGSSN 71


>gi|19704464|ref|NP_604026.1| chromosome partition protein smc [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714732|gb|AAL95325.1| Chromosome partition protein smc [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1193

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 1   MTNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           +   + +K + I+ F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++  
Sbjct: 7   LGEDMYLKAVEINGFKSFGDKVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNI 66

Query: 60  SYA---DVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                 DV   G      +T A V  +   AD  + L+    +  R + I+  
Sbjct: 67  RAKESQDVIFSGGKEKKPATKAEVSLIIDNADRYLDLDNDTVKITRRIHISGE 119


>gi|41052610|dbj|BAD08002.1| putative SMC3 protein [Oryza sativa Japonica Group]
 gi|42408824|dbj|BAD10084.1| putative SMC3 protein [Oryza sativa Japonica Group]
          Length = 1223

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 11/117 (9%)

Query: 5   IKIKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRAS 60
           + IK + +  F++Y    +    F  +  + VG NG GK+N   AI   LS      R+ 
Sbjct: 1   MYIKKVVVEGFKSYRE-EISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSE 59

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                           A VE +   +D  I +E       + +++   V    DE  
Sbjct: 60  DRGALLHEGADISVLSAFVEIVFDNSDNRIPVEK------KVVRLRRTVASKKDEYY 110


>gi|268533716|ref|XP_002631987.1| Hypothetical protein CBG10266 [Caenorhabditis briggsae]
 gi|187031189|emb|CAP29725.1| hypothetical protein CBG_10266 [Caenorhabditis briggsae AF16]
          Length = 639

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 24/47 (51%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  +++  FR++ +    F     +  G N  GK++++ A++F   G
Sbjct: 4  LHSIDVVNFRDFRNRTFRFAPGLNVIHGANASGKSSLIAALNFGLTG 50



 Score = 40.3 bits (93), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           + I+ + I ++ + +  +  F +      G N  GKT ++ AI+F   G
Sbjct: 318 VHIQSVYIRKYFSTSRTQFEFTSGVNCLPGGNSSGKTTLVAAINFTLLG 366


>gi|326482363|gb|EGE06373.1| cohesin complex subunit [Trichophyton equinum CBS 127.97]
          Length = 1271

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|300123109|emb|CBK24116.2| unnamed protein product [Blastocystis hominis]
          Length = 1330

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 4/81 (4%)

Query: 3   NRIKIKFLNISEFRNYASL-RL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            R+ I  L +  F++YA +  +  F    T  VG NG GK+N+++A+ F+   R    R 
Sbjct: 28  PRLVIDKLVLENFKSYAGVKEIGPFHKNFTSIVGPNGSGKSNVIDAMLFVFGKRASKLRL 87

Query: 59  ASYADVTRIGSPSFFSTFARV 79
              +++    +    ++FARV
Sbjct: 88  KKVSELIHNSANRAPASFARV 108


>gi|291459745|ref|ZP_06599135.1| conserved hypothetical protein [Oribacterium sp. oral taxon 078
          str. F0262]
 gi|291417535|gb|EFE91254.1| conserved hypothetical protein [Oribacterium sp. oral taxon 078
          str. F0262]
          Length = 474

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ-------HTIFVGDNGVGKTNILEAISFL 50
          ++++ L+I  F+N  + +L F               G NG GKT +++AI  L
Sbjct: 6  VRLESLSIENFKNIKAGQLSFANSRKAYKTSILGLYGQNGSGKTALIDAIELL 58


>gi|284048342|ref|YP_003398681.1| ATP-dependent endonuclease of the OLD family- like protein
          [Acidaminococcus fermentans DSM 20731]
 gi|283952563|gb|ADB47366.1| ATP-dependent endonuclease of the OLD family- like protein
          [Acidaminococcus fermentans DSM 20731]
          Length = 552

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 25/49 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +  + I  +RN+  + + F       VG+N +GK+  L  +S+++  
Sbjct: 1  MYLSSMRIQNYRNFKDITMTFHPLANYLVGENDIGKSGFLRLLSYMANA 49


>gi|256852458|ref|ZP_05557834.1| predicted protein [Enterococcus faecalis T8]
 gi|256712312|gb|EEU27344.1| predicted protein [Enterococcus faecalis T8]
          Length = 790

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 6   KIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RASYA 62
           KI  + +  F++     + F +    +  G NG GKT I +A+  +  G+  R       
Sbjct: 12  KINKIYLKNFKHVNEAEISFCNNDLVVLDGPNGFGKTTIFDAVELVMTGKISRITNTIDR 71

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            +        +         E   ++ I+ E   ++ V   +I+   
Sbjct: 72  RL-------GYEYTLFSNNNEVDTEVRIEFEKGGEKIVIAKRIDSKK 111


>gi|206576343|ref|YP_002238608.1| RecF/RecN/SMC N-terminal domain protein [Klebsiella pneumoniae
          342]
 gi|206565401|gb|ACI07177.1| RecF/RecN/SMC N-terminal domain protein [Klebsiella pneumoniae
          342]
          Length = 362

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I+++ I  FR+   + L       I  G NG GK+NI  AI  L+
Sbjct: 2  IQYIRIQNFRSVRDIALELGP-LNIVFGPNGCGKSNIYNAIHLLT 45


>gi|91202091|emb|CAJ75151.1| hypothetical protein kuste4389 [Candidatus Kuenenia
          stuttgartiensis]
          Length = 574

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          +K+  + I  FR   SL L  D   T+ +G+N  GK+ +LEAI  L   RGF
Sbjct: 1  MKLIEIKIENFRGVRSLHLPLD-GLTVLIGENNTGKSTVLEAIR-LVLTRGF 50


>gi|225680949|gb|EEH19233.1| conserved hypothetical protein [Paracoccidioides brasiliensis
          Pb03]
          Length = 1279

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|54298609|ref|YP_124978.1| hypothetical protein lpp2673 [Legionella pneumophila str. Paris]
 gi|53752394|emb|CAH13826.1| hypothetical protein lpp2673 [Legionella pneumophila str. Paris]
          Length = 1164

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +K L ++ F+++     + F ++    VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1  MHLKQLKLAGFKSFVDPTTVHFPSRLVAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61 YADVTRIGSPS 71
            D+   GS +
Sbjct: 61 MTDIIFNGSSN 71


>gi|15922257|ref|NP_377926.1| hypothetical protein ST1941 [Sulfolobus tokodaii str. 7]
 gi|15623046|dbj|BAB67035.1| 354aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 354

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 17/121 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+++ +  F+++  LR+    +  + VG NG GK+N ++   FL            +  R
Sbjct: 2   IQWIRVKNFKSFDDLRIDLH-KVNVLVGPNGAGKSNFVDVFLFL-----------REFIR 49

Query: 67  IGS--PSFFSTFARVEGMEGLAD--ISIKLETRDDRSVRCLQINDVV-IRVVDELNKHLR 121
             S  P  F  +   + +  + D  +++++E + D       IN    +RV++E  +H  
Sbjct: 50  PSSLPPYPFLYWGGYKNLVYMNDESLNVEIEVQGDNYHYRTVINGKDGLRVLEEELEHQG 109

Query: 122 I 122
           +
Sbjct: 110 V 110


>gi|312077059|ref|XP_003141137.1| hypothetical protein LOAG_05552 [Loa loa]
 gi|307763699|gb|EFO22933.1| hypothetical protein LOAG_05552 [Loa loa]
          Length = 1226

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          ++  L +  F++Y  +  +    Q T  +G NG GK+N+++A+ F+   +    R     
Sbjct: 3  RLHTLELENFKSYKGNQIVGPFKQFTAIIGPNGSGKSNLMDAMCFVLGEKASNLRVKKLH 62

Query: 63 DVTRIGSP 70
          D+   G+P
Sbjct: 63 DLI-HGAP 69


>gi|294654799|ref|XP_002770032.1| DEHA2A12606p [Debaryomyces hansenii CBS767]
 gi|199429158|emb|CAR65408.1| DEHA2A12606p [Debaryomyces hansenii]
          Length = 1087

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 83/261 (31%), Gaps = 25/261 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYADV 64
           I  + +  F  Y+           + +G NG GK+ ++ AI     G+    +R +   +
Sbjct: 39  ILKVKVKNFTTYSYAEFNLSPTLNMIIGPNGTGKSTLVAAICLGLGGKIDLIKRKTMKSM 98

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVVDELNKHLRI 122
            + G      +   +   +   D+ + ++ +        ++N      + + ++ K   I
Sbjct: 99  IKTGQED---STIEITLKDSEPDVYLVIQRKFTEKESVWKLNGEISDEKSIKKICKKFNI 155

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE----RLMRGRNRLLTEGYF 178
                  D +   L  ER          + P               L+     L+ +   
Sbjct: 156 QL-----DNLCHFLPQERVA----EFAGLSPEMLLLETQRTLGSGHLLAMHEDLIAKDNM 206

Query: 179 DSSW---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
             S     +SIE ++ +L  +    R++          E  Q      + +      D K
Sbjct: 207 RESLKTDIASIEERLIKLTEE--KDRLQEEARRFEEYQEKTQDLINHKMLIPYAQLQDLK 264

Query: 236 FDQSFCALKEEYAKKLFDGRK 256
             Q     + + AKK  +  K
Sbjct: 265 ERQKHIKKERDLAKKKLENFK 285


>gi|170577573|ref|XP_001894059.1| SMC family, C-terminal domain containing protein [Brugia malayi]
 gi|158599537|gb|EDP37102.1| SMC family, C-terminal domain containing protein [Brugia malayi]
          Length = 1238

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          ++  L +  F++Y  +  +    Q T  +G NG GK+N+++A+ F+   +    R     
Sbjct: 3  RLHTLELENFKSYKGNQIVGPFKQFTAIIGPNGSGKSNLMDAMCFVLGEKASNLRVKKLH 62

Query: 63 DVTRIGSP 70
          D+   G+P
Sbjct: 63 DLI-HGAP 69


>gi|74180915|dbj|BAE25655.1| unnamed protein product [Mus musculus]
          Length = 723

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250


>gi|34764224|ref|ZP_00145079.1| ATP binding protein [Fusobacterium nucleatum subsp. vincentii
          ATCC 49256]
 gi|27885998|gb|EAA23319.1| ATP binding protein [Fusobacterium nucleatum subsp. vincentii
          ATCC 49256]
          Length = 316

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          I+ + I  +R   SL +    ++  F+G+NG  KT  LEAI 
Sbjct: 2  IEKIRIKNYRGIKSLEIDNLKKYNFFIGNNGSSKTTSLEAIF 43


>gi|327292781|ref|XP_003231088.1| SMC protein [Trichophyton rubrum CBS 118892]
 gi|326466718|gb|EGD92171.1| SMC protein [Trichophyton rubrum CBS 118892]
          Length = 1309

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6   KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 40  KLIRLELFNFKSYKGHHTLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 99

Query: 62  ADVTRIG 68
            D+   G
Sbjct: 100 RDLVYRG 106


>gi|317121345|ref|YP_004101348.1| SMC domain protein [Thermaerobacter marianensis DSM 12885]
 gi|315591325|gb|ADU50621.1| SMC domain protein [Thermaerobacter marianensis DSM 12885]
          Length = 409

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++F+ I  +++     +  + + T+ VG NG GK+N L+A+ F++     R  +     R
Sbjct: 10  VEFIKIRNYKSIGRCEVRLN-RLTVLVGPNGSGKSNFLDALRFVADA--LRT-TLEHAIR 65

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
                      R        ++ I L        R +
Sbjct: 66  ---DRGGINEVRRRSYGHPHNLGITLGINVPDGSRAI 99


>gi|307211956|gb|EFN87868.1| DNA repair protein RAD50 [Harpegnathos saltator]
          Length = 1371

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 15/114 (13%)

Query: 6   KIKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--------- 52
           KI+ L++   RN+        L F    T+ +G NG GKT I+EA+ + +          
Sbjct: 3   KIRRLSVRGIRNFGDDNEDALLRFSCPMTLILGPNGTGKTTIIEALKYATTGEFPPGSEK 62

Query: 53  GRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
           G+ F      ++   GS         V+ +  +  +   +E+           N
Sbjct: 63  GKSF--IHDPNLASTGSIRGVVKAEIVDSIGNMYTVCRTIESMKTTKKFKTLDN 114



 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 34/220 (15%)

Query: 166  MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
            +R RN  L +             ++ +      +AR    +     I   V+++   ++K
Sbjct: 1074 LRQRNVSLGKQEELERVIEQYTQELQK--EVYRLARRNYTDK---CIELAVEEDTIANLK 1128

Query: 226  LSLTGFLD---GKFDQSFCALKEEYAKKLFDGRKMD------SMSRRTLIGPHRSD---- 272
             + +  LD    ++ +   A   +  KKL+             +      G   +     
Sbjct: 1129 -AYSQILDAAMIEYHEERMATVNKIMKKLWKHIYKGTDTSSIQIRTEPTDGVGSNRRSYN 1187

Query: 273  ---LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
               +   +  +       S G++ +  + I LA A       G   IL LDE + +LDE+
Sbjct: 1188 YKLIQTKHGCEMDMKGRCSAGQKVLASIIIRLALAETFCKDCG---ILALDEPTTNLDEE 1244

Query: 330  KRNALFRIVT---------DIGSQIFMTGTDKSVFDSLNE 360
              N+L   +T             Q+ +   D+     L +
Sbjct: 1245 NANSLADTLTKVVEMRSKHQKNFQLIIISHDEKFLQKLAD 1284


>gi|307207997|gb|EFN85556.1| Structural maintenance of chromosomes protein 5 [Harpegnathos
           saltator]
          Length = 1044

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 4/100 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  Y  + +       + +G NG GK+ I+ AI     G+     R     +
Sbjct: 9   ITRIYLENFVTYDKVTIKPGRYLNVIIGPNGSGKSTIVAAIVLGLGGKTNIIGRAPHVGE 68

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
             + G  +       +        +  ++ T+  +S   +
Sbjct: 69  YVKYGCETA-KIEIHLMYGRKRDRVITRIFTKQGKSTWMI 107


>gi|303249305|ref|ZP_07335536.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
 gi|302489273|gb|EFL49232.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
          Length = 453

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
          + L +++F  +A     F     +  G N  GK+ ++E +  L+        +     R 
Sbjct: 3  RRLVLTDFMAHAHTVFEFAPGLNVLTGPNNTGKSAVVEGLRCLAQ-----NPTPGHCIRH 57

Query: 68 GSPSFFSTFARVEG 81
          G+     +    +G
Sbjct: 58 GAREARVSAEFDDG 71


>gi|296328179|ref|ZP_06870710.1| chromosome segregation ATPase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154691|gb|EFG95477.1| chromosome segregation ATPase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 1193

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 1   MTNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           +   + +K + I+ F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++  
Sbjct: 7   LGEDMYLKAVEINGFKSFGDKVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNI 66

Query: 60  SYA---DVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                 DV   G      +T A V  +   AD  + L+    +  R + I+  
Sbjct: 67  RAKESQDVIFSGGKEKKPATKAEVSLIIDNADRYLDLDNDTVKITRRIHISGE 119


>gi|296807506|ref|XP_002844217.1| mitotic cohesin complex subunit Psm1 [Arthroderma otae CBS
          113480]
 gi|238843700|gb|EEQ33362.1| mitotic cohesin complex subunit Psm1 [Arthroderma otae CBS
          113480]
          Length = 1281

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|219854637|ref|YP_002471759.1| hypothetical protein CKR_1294 [Clostridium kluyveri NBRC 12016]
 gi|219568361|dbj|BAH06345.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1185

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K + I  F+++A    L+F    T  VG NG GK+NI +A+ ++   +     R   
Sbjct: 3   MFLKTIEIKGFKSFADKTELIFTGGITSIVGPNGSGKSNISDAVRWVLGEQSVKTLRGGK 62

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSVRC-LQINDVVIR 111
             DV   G+              ++  +    +    I +  R  RS      IN+V  R
Sbjct: 63  MEDVIFAGTQFRKPLGLCQVSLTLDNEDKKLSLEYSNITVSRRLYRSGESEYYINNVQCR 122

Query: 112 VVD 114
           + D
Sbjct: 123 LRD 125


>gi|194746442|ref|XP_001955689.1| GF18888 [Drosophila ananassae]
 gi|190628726|gb|EDV44250.1| GF18888 [Drosophila ananassae]
          Length = 1121

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           K+  + ++ F  +++L + F       VG+NG GK+ ++ A++ L      R  S A   
Sbjct: 97  KVISMRLTNFMCHSNLLVEFGPNINFLVGNNGSGKSAVITALA-LGLTSSARATSRASSI 155

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           +            ++  E  A ISI L     R  + 
Sbjct: 156 QK----------LIKNGETSATISITLSNSGLRPFKA 182


>gi|169835672|ref|ZP_02868860.1| DNA repair protein recN [candidate division TM7 single-cell isolate
           TM7a]
          Length = 404

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 30/207 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L ++      +L L F+ +     G+ G GK+ IL  IS L   R        D+ R
Sbjct: 2   LRELRLNNLAIIKNLDLEFNDKFIALTGETGAGKSIILNGISLLIGERSH-----TDMIR 56

Query: 67  IGSPSFFSTFA---------RVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVD- 114
            G+   F+            R++  G E   D  I     D  +   + +N   + +   
Sbjct: 57  NGAQGLFAEGVFELNENQKKRLDELGFEIEDDELIITRYFDRNAKSKITVNGSRMTLSRL 116

Query: 115 --------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
                   +L       +L+ S   +         RFLD     +  + R  +   ++L 
Sbjct: 117 KELMVNIIDLVGQHEHQFLLNSDYHLHLLD-----RFLDDEGKMLSKKIRESVNKIKKLN 171

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
                +  E    +     +E Q+ E+
Sbjct: 172 LQIGNIEEEKSKIAEKKDILEFQLKEI 198


>gi|161507734|ref|YP_001577695.1| DNA repair protein [Lactobacillus helveticus DPC 4571]
 gi|160348723|gb|ABX27397.1| DNA repair protein [Lactobacillus helveticus DPC 4571]
          Length = 560

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 29/186 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L   R        ++ R
Sbjct: 2   LVELDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGSRS-----QKEMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F      E +A++  K     D            +    ++IN     I
Sbjct: 57  SGEQKAVITGLFVLDNQKEKIAELCEKYGLPHDDDQLVISRELAIKGRNIVRINGQLTTI 116

Query: 111 RVVDELNKHL-------RISWLVPSMDRIFSGLSMERRRFL-DRMVFAIDPRHRRRMIDF 162
            V+ E+  +L           L+    +I          F  +   +  D RH +++ + 
Sbjct: 117 NVLREIGNYLVDIHGQHDQQILMDQDRQIDLVDDYAPDSFKEELSAYQEDYRHWQKLTNQ 176

Query: 163 ERLMRG 168
            R +R 
Sbjct: 177 LRHLRQ 182


>gi|156095340|ref|XP_001613705.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148802579|gb|EDL43978.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1702

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
           KI  L I  F N+ +L + F++   I +G NG GK+ I +A++ 
Sbjct: 266 KIIKLRIRNFLNHENLEMSFNSNKNIIIGKNGKGKSAIAQAVAV 309


>gi|52550556|gb|AAU84405.1| hypothetical protein GZ9E5_29 [uncultured archaeon GZfos9E5]
          Length = 547

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +KI+   I  +R+   L++       +F G N VGK+NIL  +  
Sbjct: 1  MKIEAFTIKNYRSIKELKIENLNPVNVFFGKNNVGKSNILRGLHL 45


>gi|85857877|ref|YP_460079.1| ATPase [Syntrophus aciditrophicus SB]
 gi|85720968|gb|ABC75911.1| ATPase [Syntrophus aciditrophicus SB]
          Length = 397

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ ++I  +R +    L   ++  +FVG+NG GK+ I +  SFL       + +   V
Sbjct: 9  MQIESIDIQNYRLFKQASLNKLSRLAVFVGENGAGKSTIFDVFSFLK--DSLAQNAAKAV 66

Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98
           R G   F    +R  G EG   I++K      R
Sbjct: 67 ARRG--GFKELVSR--GTEGPISITLKFRETGGR 96


>gi|330448262|ref|ZP_08311910.1| conserved protein with nucleoside triphosphate hydrolase domain
          [Photobacterium leiognathi subsp. mandapamensis
          svers.1.1.]
 gi|328492453|dbj|GAA06407.1| conserved protein with nucleoside triphosphate hydrolase domain
          [Photobacterium leiognathi subsp. mandapamensis
          svers.1.1.]
          Length = 546

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + ++ + IS FR    L L F+   T+ +G+N  GK+++L+A+  
Sbjct: 1  MHLESIEISGFRGIKRLSLSFNE-LTVLIGENAWGKSSLLDALCL 44


>gi|324500227|gb|ADY40115.1| Structural maintenance of chromosomes protein 1A [Ascaris suum]
          Length = 1225

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYA 62
          ++  L +  F++Y     +   A  T  VG NG GK+N+++A+SF+     +  R     
Sbjct: 3  RLLSLEVENFKSYKGKHVIGPFADFTAIVGPNGSGKSNLMDAVSFVLGEDKKNLRVKKLQ 62

Query: 63 DVTR 66
          D+  
Sbjct: 63 DLIH 66


>gi|315030491|gb|EFT42423.1| RecF/RecN/SMC protein [Enterococcus faecalis TX4000]
          Length = 801

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 6   KIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RASYA 62
           KI  + +  F++     + F +    +  G NG GKT I +A+  +  G+  R       
Sbjct: 23  KINKIYLKNFKHVNEAEISFCNNDLVVLDGPNGFGKTTIFDAVELVMTGKISRITNTIDR 82

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            +        +         E   ++ I+ E   ++ V   +I+   
Sbjct: 83  RL-------GYEYTLFSNNNEVDTEVRIEFEKGGEKIVIAKRIDSKK 122


>gi|162450015|ref|YP_001612382.1| hypothetical protein sce1744 [Sorangium cellulosum 'So ce 56']
 gi|161160597|emb|CAN91902.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 1201

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          ++I+ L IS F+++     + FD      VG NG GK+NI++AI +    +     R  S
Sbjct: 1  MRIRKLEISGFKSFVDRTVVHFDTDVVGIVGPNGCGKSNIVDAIRWAIGEQSAKHLRGKS 60

Query: 61 YADVTRIGSP 70
           +DV   GS 
Sbjct: 61 MSDVIFNGSE 70


>gi|148240460|ref|YP_001225847.1| chromosome segregation ATPase [Synechococcus sp. WH 7803]
 gi|147848999|emb|CAK24550.1| Chromosome segregation ATPase [Synechococcus sp. WH 7803]
          Length = 1201

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 112/346 (32%), Gaps = 37/346 (10%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + I  + ++ F+++  ++ +  +   T+  G NG GK+NIL+ + F   L+  RG R   
Sbjct: 2   VHINQVGLTHFKSFGGAMTIPLEPGFTVVTGPNGSGKSNILDGVLFCLGLANSRGMRADR 61

Query: 61  YADVTRIG--------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
             D+   G          +    F   +     A+  I+    +   +R  Q    V R 
Sbjct: 62  LPDLVNSGVLKAGKSAETTVSVRFDLSDWQPDAAEEGIEA-PEEGPWIRPDQTEWTVTRK 120

Query: 113 VDELNKHLRISWLVPSMD--RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           +  +      S          +    +  RR  +D     +         D  R++   N
Sbjct: 121 LRVMPGGSYSSSYSADGIPCNLQQLQTQLRRLRIDPEGSNVV-----MQGDVTRIVSMSN 175

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
           R              + A +A    +I   R ++ +         + ++     +  L  
Sbjct: 176 R------DRRGLIDEL-AGVALFDTRIEQTRRKLDDVQERQERCRIVEQELLAARQRL-- 226

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST- 289
               + D +     +E  ++L  GR+ + +         R  L   + D        S  
Sbjct: 227 ----EKDCAKARAYQELREQLQLGRRQELVLAYEAAQAERRRLQQRHQDLGDQDTRDSQA 282

Query: 290 -GEQKVVL--VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
             EQ+  L      L   +      G   +L +    A LD + R 
Sbjct: 283 LEEQETTLQEAATKLKTLQDNVKALGEDQLLGVQAELAGLDPENRE 328


>gi|120612249|ref|YP_971927.1| DNA repair protein RecN [Acidovorax citrulli AAC00-1]
 gi|120590713|gb|ABM34153.1| DNA replication and repair protein RecN [Acidovorax citrulli
           AAC00-1]
          Length = 557

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 15/116 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + + +F    SL L   +  T+  G+ G GK+ +++A+  L   R     +   V
Sbjct: 1   MALKRIALRDFVIVESLELDLHSGFTVLTGETGAGKSILIDALQLLLGAR-----ADPGV 55

Query: 65  TRIGSPSFF---------STFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI 110
            R G+ S           +  A ++      +  + L    D   +    IN V +
Sbjct: 56  VREGAASTDLCAEFDGTPAIAAWLDDAGIPPEDGLLLRRTIDTQGKSRAWINGVPV 111


>gi|74180294|dbj|BAE24449.1| unnamed protein product [Mus musculus]
          Length = 284

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250


>gi|299131915|ref|ZP_07025110.1| DNA repair protein RecN [Afipia sp. 1NLS2]
 gi|298592052|gb|EFI52252.1| DNA repair protein RecN [Afipia sp. 1NLS2]
          Length = 559

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 80/255 (31%), Gaps = 39/255 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  R+ I+ + +        L + F     +  G+ G GK+ +L+A +    GRG     
Sbjct: 1   MLARLSIRDIVL-----IERLDIDFAKGLAVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61  YADVTRIGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCL-QIN 106
            A + R G      T A             R  G +      + L        R    +N
Sbjct: 51  DASLVRHGVEQGQVTAAFDLPKKHPAFAILRENGFDDPESGEMILRRVQLADGRTRGFLN 110

Query: 107 DVVIRVVDELNKHLRISWLVP-SMDRIFSGLSMERRRF-----LDRMVFAIDPRHRRRMI 160
           D  + +         +  +     +R    ++  RR       LD  V  ++     R  
Sbjct: 111 DQPVSIQTLKAIGATLVEIHGQHDERALVDVATHRRLLDAFAGLDESVVVVESLWGARRT 170

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMI--NALSSLI 212
             + L   R   +     D+ +      ++ +L        ++   R  M+    +S  +
Sbjct: 171 ARDALEEHR-AGMERAARDADYLRHASEELMKLAPEGGEETRLAERRTAMMQGEKISEDL 229

Query: 213 MEYVQKENFPHIKLS 227
            + +     P   ++
Sbjct: 230 RDALAAVAGPQSSVT 244


>gi|217972880|ref|YP_002357631.1| chromosome segregation protein SMC [Shewanella baltica OS223]
 gi|217498015|gb|ACK46208.1| chromosome segregation protein SMC [Shewanella baltica OS223]
          Length = 1138

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 32/225 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ F    T  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPFLQALTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND 107
            ADV   GS +            F +   R+ G     +  I ++ +  R       +N 
Sbjct: 61  MADVIFNGSSARKPVSVAGVELIFENKDGRLAGQYASYE-EIAVKRQVSRDGESWYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++        R++ R
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAG--ISRYKER 176

Query: 159 MIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
             +   R+   R  L   G   S     ++ ++A+        R 
Sbjct: 177 RRETENRIRHTRENLERLGDIRSELGKQLD-KLAQQAKAAKQYRE 220



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 32/175 (18%)

Query: 197  INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            ++  R +++  L ++ +  +++      + S     D   ++    L+E   K   + R 
Sbjct: 924  LDQIRQKIV-RLGAINLAAIEEFEQQSERKSYLDHQDDDLNKGLATLEEAIRKIDKETRS 982

Query: 257  M----------DSMS--------RRTLIGPHRSDLIVDY--------CDKAITIAHGSTG 290
                       D            R  +     DL+             K  TI   S G
Sbjct: 983  RFKTTFDSVNEDLGRLFPKVFGGGRAYLALTDDDLLETGVTIMAQPPGKKNSTIHLLSGG 1042

Query: 291  EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
            E+ +  + +  A  RL       AP  +LDE+ A LD+       R++ ++   +
Sbjct: 1043 EKALTALSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVERFCRLLKEMSQSV 1092


>gi|58268024|ref|XP_571168.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57227402|gb|AAW43861.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1540

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
           +R+ I  L +  F++YA    +  F    +  VG NG GK+N ++A+ F+   R    R+
Sbjct: 242 SRLTIHKLVLVNFKSYAGRQEIGPFHKSFSAIVGPNGSGKSNTIDALLFVFGYRASKMRQ 301

Query: 59  ASYADVTRI--GSPSFFSTFARV 79
              +++     G  +  S    V
Sbjct: 302 GKLSELIHNSAGKENLESCSVEV 324


>gi|261195865|ref|XP_002624336.1| nuclear condensin complex subunit Smc4 [Ajellomyces dermatitidis
           SLH14081]
 gi|239587469|gb|EEQ70112.1| nuclear condensin complex subunit Smc4 [Ajellomyces dermatitidis
           SLH14081]
 gi|239614421|gb|EEQ91408.1| nuclear condensin complex subunit Smc4 [Ajellomyces dermatitidis
           ER-3]
          Length = 1446

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 16/120 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F    +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 239 PRMVITHLVMTNFKSYAGRQVVGPFHVSFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 295

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
                   +    +      F  VE               +  E++   S R  + N   
Sbjct: 296 MRQGKISALIHNSANFPDLQFCEVEVHFQEILDLPEGGHEVVPESQLIVSRRAFKNNSSK 355


>gi|254585009|ref|XP_002498072.1| ZYRO0G01584p [Zygosaccharomyces rouxii]
 gi|238940966|emb|CAR29139.1| ZYRO0G01584p [Zygosaccharomyces rouxii]
          Length = 1088

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 40/121 (33%), Gaps = 12/121 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
            I  + +  F  Y            + +G NG GK+  + A+     G+     R     
Sbjct: 35  AIVKMRLENFVTYTLTEFDLSPSLNMIIGPNGSGKSTFVCAVCLGLAGKPEFIKRSKRVE 94

Query: 63  DVTRIGSPSFFSTFA-----RVEGMEGLAD----ISIKLETRDDRSVRCLQINDVVIRVV 113
           D  + G              +VEGM G+      I I  E    +S     IND V+   
Sbjct: 95  DFIKNGEDRGSIEITLKNSPKVEGMPGVDSEADTIKITRELIKSKSKSRYMINDRVVSEE 154

Query: 114 D 114
           D
Sbjct: 155 D 155


>gi|296126919|ref|YP_003634171.1| SMC domain protein [Brachyspira murdochii DSM 12563]
 gi|296018735|gb|ADG71972.1| SMC domain protein [Brachyspira murdochii DSM 12563]
          Length = 628

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 50/106 (47%), Gaps = 16/106 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFV--GDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + I+ L I+ ++N  ++++    ++++    G+NG+GK+NI++ I  L   +        
Sbjct: 1   MYIRELIITNYKNIKNVKIDLQHEYSMIYLTGENGIGKSNIIDIIFKLFTYK-------K 53

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
           ++       F+    ++E      +I ++LET +       + N+ 
Sbjct: 54  NL--FEKEDFYKNEEKIE-----IEIKLELETNEIFKDYLYRDNNK 92


>gi|238814365|ref|NP_001154943.1| structural maintenance of chromosomes 2 [Nasonia vitripennis]
          Length = 1177

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 18/123 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + I  F++Y   + +  FD +     G NG GK+NIL++I F   +S     R +
Sbjct: 1   MYIKSMVIEGFKSYGKRVEINGFDREFNAITGLNGSGKSNILDSICFVLGISNLSNVRAS 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          +            G E   +I++  +   D   +   IN 
Sbjct: 61  NLQELVYKSGQAGVKKASVTIVFDNRNRESSPMGYEDYEEITVTRQVVIDGKNK-YMING 119

Query: 108 VVI 110
             +
Sbjct: 120 SNV 122


>gi|160902942|ref|YP_001568523.1| ATP-dependent OLD family endonuclease [Petrotoga mobilis SJ95]
 gi|160360586|gb|ABX32200.1| ATP-dependent endonuclease of the OLD family [Petrotoga mobilis
          SJ95]
          Length = 573

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KIK + I  FR+           + + VG N VGK+N+L A+   
Sbjct: 1  MKIKSITIHNFRSLKDAMFDLYD-YNVLVGANNVGKSNVLTALRIF 45


>gi|170727193|ref|YP_001761219.1| chromosome segregation protein SMC [Shewanella woodyi ATCC 51908]
 gi|169812540|gb|ACA87124.1| chromosome segregation protein SMC [Shewanella woodyi ATCC 51908]
          Length = 1133

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/282 (17%), Positives = 99/282 (35%), Gaps = 39/282 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ F    T  +G NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPFLNPLTAVIGPNGCGKSNIIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
            ADV   GS +            F +   R+ G      +I++K +   D       +N 
Sbjct: 61  MADVIFNGSTARRPVSVASVELLFENQDGRLSGEYASYQEIAVKRQVSRD-GDSSYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P            R+      E R F++        R++ R
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQELRVFIEEAAG--ISRYKER 176

Query: 159 MIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
             +   R+   R  L       +     ++ ++AE        R   +      +   + 
Sbjct: 177 RRETENRIRHTRENLERLADIRTELSRQLD-KLAEQASAAKQYRE--LKQSERKLDAELS 233

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
              F  + L +      K       L+ + A+ L      + 
Sbjct: 234 VSRFSELTLQME-----KLTNEINLLEVDLAEFLALKESTEL 270



 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 44/219 (20%)

Query: 166  MRGRNRLLTEGYFDSSWC---SSIEAQMAELGVKI---NIARVEMINALSSLIMEYVQKE 219
            ++ R   +       S       IE ++ +  + +     AR   +  + + I+      
Sbjct: 874  LKLRREGIKGQADSQSMQLKEQQIEVELVQSAMDMNITLAARQRELERIRARIVHLGAIN 933

Query: 220  NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT--------------- 264
                 +           D     L +         RK+D  ++                 
Sbjct: 934  LAAIEEFEQQSERKSYLDSQDADLTKALTSLEEAIRKIDRETKTRFKDTFDKVNKDLGLL 993

Query: 265  ---LIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARL 306
               + G   + L + + D               K  TI   S GE+ +  + +  A  RL
Sbjct: 994  FPKVFGGGSAHLALTHDDLLETGVTIMARPPGKKNSTIHLLSGGEKALTALSLVFAIFRL 1053

Query: 307  ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                   AP  +LDE+ A LD+       R+V ++   +
Sbjct: 1054 -----NPAPFCMLDEVDAPLDDANVERFCRLVKEMSQSV 1087


>gi|110004292|emb|CAK98630.1| hypothetical chromosome segregation smc protein [Spiroplasma citri]
          Length = 988

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/184 (22%), Positives = 64/184 (34%), Gaps = 28/184 (15%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRASYA 62
           +K L    F+++A  L + FD +    VG NG GK+NI +AI +       +  R  +  
Sbjct: 4   LKKLEAFGFKSFADPLTVNFDHEMIGIVGPNGSGKSNINDAIRWCLGEQSIKSLRGNNSE 63

Query: 63  DVTRIGSPS-----------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
           DV   GS +            F    R+  M+   +I I              IN   +R
Sbjct: 64  DVIFNGSETKQALNMAEVKLIFDNTNRIFAMDYD-EIEIIRRVFRGTGENEYFINKQRVR 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRMI 160
            + ++      S L  S   I S            +ERR   +    V     R    + 
Sbjct: 123 -LKDIQDFAIDSGLTKSSLAIISQGNINAFAEAKPLERRALFEEAAGVAKYKRRKLEALK 181

Query: 161 DFER 164
             +R
Sbjct: 182 KLDR 185


>gi|15889367|ref|NP_355048.1| DNA repair protein RecN [Agrobacterium tumefaciens str. C58]
 gi|15157213|gb|AAK87833.1| DNA repair protein RecN [Agrobacterium tumefaciens str. C58]
          Length = 557

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 31/239 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F+A  ++  G+ G GK+ +L+++S    GRG        + R
Sbjct: 2   LVQLSIRDIVLIERLDLSFEAGLSVLTGETGAGKSILLDSLSLALGGRG-----DGGLVR 56

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRV 112
            G      T A             R  G++   D+  +     D   +    +  V +++
Sbjct: 57  HGEDKGQVTAAFEVPNDHPTRLLLRENGLDDDGDLIFRRVQSADGRTKAYVNDQAVSVQM 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           + +L + L           +    +   R  LD      D         R   D +R ++
Sbjct: 117 MRQLGQMLVEIHGQHDDRALV--DTDAHRTLLDAFAGLSDEARSVQGLYRTWKDADRALK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSLIMEYVQKENF 221
                +     ++ +  S   ++  L            R  ++     +  +  +   F
Sbjct: 175 THRAKVEAAAREADYLRSSVEELETLSPRDGEEDELAERRAVMQKSERIAGDIAEASEF 233


>gi|257415602|ref|ZP_05592596.1| DNA repair protein RecN [Enterococcus faecalis AR01/DG]
 gi|257157430|gb|EEU87390.1| DNA repair protein RecN [Enterococcus faecalis ARO1/DG]
          Length = 560

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 98/266 (36%), Gaps = 33/266 (12%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N++ ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +
Sbjct: 2   NKM-LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SS 55

Query: 63  DVTRIGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQIND 107
           D  R G+        FS     E  + L ++ I+ E          +   ++V  +    
Sbjct: 56  DYIRQGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRI 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDF 162
           V I  +  + ++L           +      ER       F  + + A+  ++ +   ++
Sbjct: 116 VNITNLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEY 172

Query: 163 ERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             L   +R R +   E             ++A     +     +++   + L       +
Sbjct: 173 RALEAKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIAD 231

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKE 245
                  +L G  D   D+   ++ E
Sbjct: 232 ALTISYAALNGEDDSSLDKIGTSMNE 257


>gi|83589803|ref|YP_429812.1| condensin subunit Smc [Moorella thermoacetica ATCC 39073]
 gi|83572717|gb|ABC19269.1| condensin subunit Smc [Moorella thermoacetica ATCC 39073]
          Length = 1187

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K + I  F+ +   +RL      T  VG NG GK+NI++AI   L     +  R   
Sbjct: 1  MFLKGIEIQGFKTFVDRVRLELGPGVTGIVGPNGSGKSNIVDAILWVLGEQSAKSLRGTR 60

Query: 61 YADVTRIGSP 70
            DV   GS 
Sbjct: 61 MDDVIFAGSA 70


>gi|150390368|ref|YP_001320417.1| hypothetical protein Amet_2606 [Alkaliphilus metalliredigens QYMF]
 gi|149950230|gb|ABR48758.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
          Length = 650

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 5   IK--IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +K  ++ L I  F+      + F+   T   G+N  GKT +++A ++L   +  +  S  
Sbjct: 1   MKFILEKLKIRNFKGIREQDIEFNPISTTICGENATGKTTVVDAFTWLLFEKDSKGRSQF 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
           ++             ++ G++   +   K++ R  +  +  +
Sbjct: 61  EI------KTLEDGEQIHGLDHTVEGYFKIDGRPLKLKKTYK 96


>gi|307611497|emb|CBX01171.1| hypothetical protein LPW_28701 [Legionella pneumophila 130b]
          Length = 1164

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +K L ++ F+++     + F ++    VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1  MHLKQLKLAGFKSFVDPTTVHFPSRLVAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61 YADVTRIGSPS 71
            D+   GS +
Sbjct: 61 MTDIIFNGSSN 71


>gi|296108265|ref|YP_003619966.1| chromosome segregation SMC protein [Legionella pneumophila
          2300/99 Alcoy]
 gi|295650167|gb|ADG26014.1| chromosome segregation SMC protein [Legionella pneumophila
          2300/99 Alcoy]
          Length = 1164

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +K L ++ F+++     + F ++    VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1  MHLKQLKLAGFKSFVDPTTVHFPSRLVAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61 YADVTRIGSPS 71
            D+   GS +
Sbjct: 61 MTDIIFNGSSN 71


>gi|229547624|ref|ZP_04436349.1| RecF/RecN/SMC N domain protein [Enterococcus faecalis TX1322]
 gi|229307248|gb|EEN73235.1| RecF/RecN/SMC N domain protein [Enterococcus faecalis TX1322]
          Length = 801

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 6   KIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RASYA 62
           KI  + +  F++     + F +    +  G NG GKT I +A+  +  G+  R       
Sbjct: 23  KINKIYLKNFKHVNEAEISFCNNDLVVLDGPNGFGKTTIFDAVELVMTGKISRITNTIDR 82

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            +        +         E   ++ I+ E   ++ V   +I+   
Sbjct: 83  RL-------GYEYTLFSNNNEVDTEVRIEFEKGGEKIVIAKRIDSKK 122


>gi|153954023|ref|YP_001394788.1| hypothetical protein CKL_1398 [Clostridium kluyveri DSM 555]
 gi|146346904|gb|EDK33440.1| Hypothetical protein CKL_1398 [Clostridium kluyveri DSM 555]
          Length = 1183

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K + I  F+++A    L+F    T  VG NG GK+NI +A+ ++   +     R   
Sbjct: 1   MFLKTIEIKGFKSFADKTELIFTGGITSIVGPNGSGKSNISDAVRWVLGEQSVKTLRGGK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS---IKLETRDDRSVRC-LQINDVVIR 111
             DV   G+              ++  +    +    I +  R  RS      IN+V  R
Sbjct: 61  MEDVIFAGTQFRKPLGLCQVSLTLDNEDKKLSLEYSNITVSRRLYRSGESEYYINNVQCR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LRD 123


>gi|90019845|ref|YP_525672.1| ATPase [Saccharophagus degradans 2-40]
 gi|89949445|gb|ABD79460.1| ATP-dependent endonuclease of the OLD family [Saccharophagus
          degradans 2-40]
          Length = 666

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K++ ++I+ FR +   +         T+F+G NG GKT  ++A+S L
Sbjct: 1  MKVEQISITNFRCFGRETTTFTLQDNSTVFIGSNGSGKTAAIQALSRL 48


>gi|68072361|ref|XP_678094.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56498453|emb|CAH99337.1| hypothetical protein PB000188.03.0 [Plasmodium berghei]
          Length = 380

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
           KI  L I  F N+ +L L F+    I +G NG GK+ I +AI+ 
Sbjct: 67  KIIKLRIRNFLNHENLELSFNCYKNIIIGKNGKGKSAIAQAIAV 110


>gi|320582141|gb|EFW96359.1| putative nuclear condensin complex SMC ATPase [Pichia angusta DL-1]
          Length = 1272

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 2   TNRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
             R+ I+ L ++ F++Y        F+A  +  VG NG GK+N+++++ F+   R    R
Sbjct: 50  QPRLVIEELVLTNFKSYAGRQTVGPFNASFSAIVGPNGSGKSNVIDSLLFVFGFRATKMR 109

Query: 58  RASYADVTRIGSPSFFSTFARVE 80
           ++  +++          +F +V+
Sbjct: 110 QSKLSELIHNSEAFPDLSFCQVD 132


>gi|303326824|ref|ZP_07357266.1| DNA repair protein RecN [Desulfovibrio sp. 3_1_syn3]
 gi|302862812|gb|EFL85744.1| DNA repair protein RecN [Desulfovibrio sp. 3_1_syn3]
          Length = 531

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 31/190 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L +        + L F     +  G+ G GK+ IL+A+ FL   R      
Sbjct: 1   MLEYLRIRNLAL-----IEDMELDFSPGMNVLTGETGAGKSFILKALGFLLGDR-----L 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN----------DVVI 110
            A++ R G+              G  D+ ++ E   +     L IN          D+  
Sbjct: 51  SAEMVRPGAQRAQVEALF---TLGDQDLVLRRELLAESGRSRLYINDALSSQESLRDLRA 107

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFL---DRMVFAIDPRHRRRMIDFERLMR 167
           R+V   ++H +   L P+        +  R   L   D ++        + +    + + 
Sbjct: 108 RLVTHTSQHGQQQLLQPAFQAKLMESAFPRPELLEERDALLGQ-----LQEVSARRKALS 162

Query: 168 GRNRLLTEGY 177
            +   L +  
Sbjct: 163 AKQASLADRR 172


>gi|290968346|ref|ZP_06559887.1| chromosome segregation protein SMC [Megasphaera genomosp. type_1
           str. 28L]
 gi|290781621|gb|EFD94208.1| chromosome segregation protein SMC [Megasphaera genomosp. type_1
           str. 28L]
          Length = 1185

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 54/280 (19%), Positives = 94/280 (33%), Gaps = 32/280 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +++  + +  F+++A    L FD   T  VG NG GK+NI +A+ ++      R  R   
Sbjct: 1   MQVVKMELRGFKSFADKTVLTFDRGITAIVGPNGSGKSNISDAVRWVLGEQNVRQLRGQK 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G     S          +  +   DI    + +  R  RS      IN    R
Sbjct: 61  AEDVIFSGTAQRRSQGVAEVSLYFDNQDNTLDIAFSEVVITRRLFRSGESEFYINKRPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         + +          +DRI +    ERR   + +      R + R  D  
Sbjct: 121 LKDIHRLFADTGMGQDSMAVIEQNRVDRILNSKPDERRIIFEEVAG--ISRFKGRKQDGL 178

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           R +    R L          S +  ++  L  +        +    SL  E    E    
Sbjct: 179 RKLAETERNLERVG---DLMSVLAERLVPLAKE-----AATLQQFRSLDAERRAYEGTLT 230

Query: 224 IK-LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
           ++ L  +  L  KF+ S   +  E  +       ++   +
Sbjct: 231 LQALRNSERLLAKFEYSLQEVVTEVRETRQAVALLEEKRQ 270


>gi|297588431|ref|ZP_06947074.1| exonuclease SbcC family protein [Finegoldia magna ATCC 53516]
 gi|297573804|gb|EFH92525.1| exonuclease SbcC family protein [Finegoldia magna ATCC 53516]
          Length = 527

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 54/154 (35%), Gaps = 15/154 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + ++ F++Y         +  +  G +  GKT ++ A+S++     F   +   +
Sbjct: 1   MYITDIYLTNFQSYEQGHFELSEKVNLITGASDSGKTALIRALSWVL----FNDYTTDLL 56

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI--NDVVIRVVDELNKHLRI 122
            R G  +         G        I    + + +   ++   N+  I+  +   + +  
Sbjct: 57  IRNGYNNVEVKIVFNNGNF------ILRGRKGNTNYYYIKNNPNNEEIKKYENFGREIPS 110

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
                  D +F  +++   ++   +   ++    
Sbjct: 111 EI---QDDFLFKKVNLLNEKYNILIASQLENSFL 141


>gi|94499337|ref|ZP_01305875.1| hypothetical protein RED65_11124 [Oceanobacter sp. RED65]
 gi|94428969|gb|EAT13941.1| hypothetical protein RED65_11124 [Oceanobacter sp. RED65]
          Length = 1165

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ F    T  VG NG GK+N ++A+ ++   S  +  R  +
Sbjct: 1   MRLKSIKLAGFKSFVDPTKIPFPTNLTCIVGPNGCGKSNTIDAVRWVMGESSAKNLRGDA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGME-GLADISIKLETRDDRSVRCLQIND 107
             DV   GS              F ++  +++G      +I++K +   D       +N 
Sbjct: 61  MTDVIFNGSTGRKPVGQASIELVFDNSEGKLQGEYAQYTEIAVKRKVTRDGQS-TYYLNG 119

Query: 108 VVIRVVD 114
              R  D
Sbjct: 120 TKCRRRD 126


>gi|83766230|dbj|BAE56373.1| unnamed protein product [Aspergillus oryzae]
          Length = 1279

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R  + 
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTNL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|325473644|gb|EGC76834.1| hypothetical protein HMPREF9353_02092 [Treponema denticola F0402]
          Length = 562

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 59/382 (15%), Positives = 138/382 (36%), Gaps = 46/382 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF----LSPGRGFRRA- 59
           +++   ++  FR+     ++   + +I +G N  GK+N+L+A+      +S GR  RR  
Sbjct: 1   MEVVSFSVENFRSITKKSVIPVKKLSILIGKNNEGKSNLLKALGLAMDIISSGRFIRRPI 60

Query: 60  SYADVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             + +      +      F    +  G+ G   + ++ E    ++ +         ++  
Sbjct: 61  RSSRLIFSRTQKYDWERDFPISLQENGIGGETRLGLEFEL--SQTEKEEFNKRFKPKLSS 118

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            L   + I   V     I       ++ F D+          +  I F  +   R    T
Sbjct: 119 TLVFEISIDSNVKVELEISEQNKKTKKIFGDQK--HEICEFLKEKIYFNYIPAVR----T 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           E          I  ++  LG+K N    + + ++  L    ++K +   IK S+   +  
Sbjct: 173 EEAAAKIVYELIRNEL--LGIKENKKYKQALESIKKLEAPVLKKISK-TIKDSIVQLVPN 229

Query: 235 KFDQSFCALKEE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
             D       E    ++ L+ GR+   +   T  G       ++   + +          
Sbjct: 230 VRDVIIANDSESSYMSRHLYSGREYIEIDDGTKTG-------LELKGEGV---------- 272

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGT 350
           K ++    +A  + ++        + ++E  +HL  +  + L   + +I   +Q+ ++  
Sbjct: 273 KSLVT---MALLKDMTLKKDQISFVAIEEPESHLHPEAVHLLKNKIYEIAEKNQVIISTH 329

Query: 351 DKSVFDSLNETAKFMRISNHQA 372
                D  N  +  + I++ +A
Sbjct: 330 SPIFVDRENIDSNII-INDGKA 350


>gi|321257716|ref|XP_003193684.1| chromosome segregation protein [Cryptococcus gattii WM276]
 gi|317460154|gb|ADV21897.1| Chromosome segregation protein, putative [Cryptococcus gattii
           WM276]
          Length = 1208

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 60/367 (16%), Positives = 109/367 (29%), Gaps = 59/367 (16%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAIS------FLSPGRGF 56
           + IK + I  F++Y        F   H + VG NG GK+N   AI       +    R  
Sbjct: 1   MYIKTITIQGFKSYRDQVAVDPFSPGHNVVVGRNGSGKSNFFSAIRFVLSDQYTKLSREE 60

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R      +   G+ +  +  A VE +   +D       ++      + +   +    DE 
Sbjct: 61  R----QRLLHEGTSTTTTLSAYVEIVFDNSDGRFPTGRQE------VVLRRTIGLKKDEY 110

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNRL 172
           +   R S     +D++                   +P +         L     R R RL
Sbjct: 111 S-LDRKSASKSEVDQLLESA----------GFSKANPYYIVPQGRITHLTNMNDRERLRL 159

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINI----ARVEMINALSSLIMEYVQKENFPHIKLSL 228
           L     D +     E + AE   +I       R +++  L+++     + E         
Sbjct: 160 LK----DVAGTEVYEQKRAE-STRIMEETDGKRDKILELLTTIEDRLRELEEEKEELKEY 214

Query: 229 TGF------LDGKFDQSFCALKEEYAKKLFDGRKMDSM---SRRTLIGPHRSDLIVDYCD 279
                    L+    Q           ++   R+ D      +R        ++      
Sbjct: 215 QEKDRERRCLEYALHQRELEDVTNALDEIEAERRQDIHNSNEKRKEFNDREDEIQHYEEA 274

Query: 280 KAITIAHGSTGEQKVVLVGIFLAH---ARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
                   ST +       +       A L+ N T    I+   E +  + E +R  L  
Sbjct: 275 LTAAKHSLSTTQ-----TSLRQYETERADLVRNRTELECIIADFETAGEVGEHRRAELAE 329

Query: 337 IVTDIGS 343
            +  I  
Sbjct: 330 ELDMIQQ 336



 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 52/290 (17%), Positives = 103/290 (35%), Gaps = 37/290 (12%)

Query: 92   LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS----------MDRIFSGLSMERR 141
            +      + R L     +I   DE N  +R   ++P            D+I       R 
Sbjct: 911  IMRVQKNAERYLTKRQTLINRKDECNNAIRDLGVLPEEAFSKYTDQRSDKIIK-----RL 965

Query: 142  RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
              ++  +      +++    +    + R+ L+               ++ EL   ++  +
Sbjct: 966  HKVNDSLKKFAHVNKKAFEQYSSFTKQRDELMDR----RDELDQSAIKIEELIETLDQRK 1021

Query: 202  VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF---DQSFCALKEEYAKKLFDGRKMD 258
             E I      + +Y     F  +  +L     G+     ++   ++EE  + L  GR+  
Sbjct: 1022 DEAIERTFKQVSKY-----FEEVFETLVPLGKGELIMQKKTNGYMEEESEESLEQGREKS 1076

Query: 259  SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
             +     +G           D+   I   S G++ +V + +  A           AP  L
Sbjct: 1077 DIESY--VGVSIRVSFNSKHDEGQRIQQLSGGQKSLVALALVFA-----IQKCDPAPFYL 1129

Query: 319  LDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDKSVFDSLNETAKFMRI 367
             DEI A+LD   R A+  ++  + +   F+T T KS  + L +  KF  +
Sbjct: 1130 FDEIDANLDAQYRTAVASMIHALSAHAQFITTTFKS--EMLAQADKFYGV 1177


>gi|238028388|ref|YP_002912619.1| ATP-dependent endonuclease of the OLD family-like protein
          [Burkholderia glumae BGR1]
 gi|237877582|gb|ACR29915.1| ATP-dependent endonuclease of the OLD family-like protein
          [Burkholderia glumae BGR1]
          Length = 607

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 27/46 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++++ ++I  FR Y     V  A  T FVG N +GK+++LEA+   
Sbjct: 1  MRLESVSIKNFRCYREETTVSMADLTTFVGKNDIGKSSVLEALEIF 46


>gi|291296557|ref|YP_003507955.1| SMC domain-containing protein [Meiothermus ruber DSM 1279]
 gi|290471516|gb|ADD28935.1| SMC domain protein [Meiothermus ruber DSM 1279]
          Length = 380

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          +  L +  +++   + L    +  +FVG NG GK+N+L+A+ F+S     
Sbjct: 2  LTRLLVRNYKSLGKVDLELG-KLAVFVGPNGSGKSNLLDALRFVSDALSL 50


>gi|290457659|sp|O93309|SMC3_XENLA RecName: Full=Structural maintenance of chromosomes protein 3;
           Short=SMC protein 3; Short=SMC-3
 gi|63101213|gb|AAH94474.1| Smc3 protein [Xenopus laevis]
          Length = 1209

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 83/266 (31%), Gaps = 41/266 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKRDK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM 257
            D         +   Y ++L + R  
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAK 238



 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 16/115 (13%)

Query: 254  GRKMDSMSRRTLIGPHRSD------LIVDYCDKAITIAHGST---GEQKVVLVGIFLAHA 304
             +  D     T       D      + V +  K   +        G++ +V + +  A  
Sbjct: 1065 SQSQDEGEGSTQSSVPSVDQFTGVGIRVSFTGKQAEMREMQQLSGGQKSLVALALIFA-- 1122

Query: 305  RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDS 357
                     AP  L DEI   LD   R A+  ++ ++ S  Q   T     + +S
Sbjct: 1123 ---IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELASHAQFITTTFRPELLES 1174


>gi|330882437|gb|EGH16586.1| hypothetical protein Pgy4_26420 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 103

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYAD 63
          + I+ + +  FR     R+   +  +IFVG N  GKT+   A+   +     R       
Sbjct: 1  MHIETVWVRNFRRLKDTRIDLASDISIFVGANNSGKTSAAHALQLFTSASKDRFTLHD-- 58

Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLET 94
               S  +    A  EG +G+   +I L+ 
Sbjct: 59 ---FSSECWDVINAFGEGADGVELPTISLDI 86


>gi|328471736|gb|EGF42613.1| hypothetical protein VP10329_01235 [Vibrio parahaemolyticus
          10329]
          Length = 663

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          +KIK + I  +R    +    D + TI VG N  GKT+  EA       R F
Sbjct: 1  MKIKNVRIKNYRLLKDVSFSIDEKTTIIVGRNNTGKTSFAEAF------RSF 46


>gi|320327009|gb|EFW83025.1| hypothetical protein PsgRace4_26820 [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330882737|gb|EGH16886.1| hypothetical protein Pgy4_28040 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 745

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          ++I  + +  FR    + +  ++  ++ +G N  GKT+ L  +     G   R  
Sbjct: 1  MRITKIKMQNFRLLKDISVDLESGLSVIIGKNNTGKTSFLLCLEKFIGGTATRNT 55


>gi|289772503|ref|ZP_06531881.1| DNA repair protein RecN [Streptomyces lividans TK24]
 gi|289702702|gb|EFD70131.1| DNA repair protein RecN [Streptomyces lividans TK24]
          Length = 576

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 77/252 (30%), Gaps = 41/252 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +
Sbjct: 1   MLEEMRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR---DDRSVRCLQINDVVIRVVDELN 117
            A + RIG+ +      R+      A      E     DD ++   +      R    L 
Sbjct: 51  DAALVRIGAKNA-VVEGRIAVPGDAAVAVRAEEAGAELDDGALLISRTVSAEGRSRAHLG 109

Query: 118 KHLRISWLVPSM-DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
                  ++  + D + +            +    D           +L R R  L    
Sbjct: 110 GRSVPVGMLAELADELVA------------VHGQTDQ------QGLLKLNRQRQAL---- 147

Query: 177 YFDSSWCSSIEAQMAELGVKINIARV--EMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
             D     ++   +A+        R     +  +++   E  Q+ +     L     ++ 
Sbjct: 148 --DRYAGDAVAGPLAKYAEAYRRLRAVVRELEEITTRARERAQEADLLRYGLDEIAAVEP 205

Query: 235 KFDQSFCALKEE 246
           +  +     +E 
Sbjct: 206 RAGEDVELAEEA 217


>gi|190341561|gb|ACE74857.1| RecN [Enterobacter radicincitans]
          Length = 553

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 47/257 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+P     + FA  +       +  + +  D R     ++     R    +N       
Sbjct: 57  AGAPRADLCARFALKDTPAAQRWLE-ENQLEDGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKSEHQKSLLD 147

Query: 185 ------SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-IKLSLTGFLDGKFD 237
                 ++  QMAE          +    L+    +  ++      +   L    +    
Sbjct: 148 GYAGEYALTQQMAEH----YRTWHQSCRELAQHQQQSQERAARAELLHYQLKELNEFHPQ 203

Query: 238 QSFCALKEEYAKKLFDG 254
                  +E  K+L + 
Sbjct: 204 PGEFEQIDEEYKRLANS 220


>gi|148358645|ref|YP_001249852.1| chromosome segregation SMC protein [Legionella pneumophila str.
          Corby]
 gi|148280418|gb|ABQ54506.1| chromosome segregation SMC protein [Legionella pneumophila str.
          Corby]
          Length = 1164

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +K L ++ F+++     + F ++    VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1  MHLKQLKLAGFKSFVDPTTVHFPSRLVAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61 YADVTRIGSPS 71
            D+   GS +
Sbjct: 61 MTDIIFNGSSN 71


>gi|78778444|ref|YP_396556.1| condensin subunit Smc [Prochlorococcus marinus str. MIT 9312]
 gi|78711943|gb|ABB49120.1| condensin subunit Smc [Prochlorococcus marinus str. MIT 9312]
          Length = 1196

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  +    F+++  S+++  +   T+  G NG GK+NIL+ I F   L+  RG R   
Sbjct: 4  VHINQVEFENFKSFGGSVKIPLEEGFTVVTGPNGSGKSNILDGILFCLGLANSRGMRAER 63

Query: 61 YADVTR 66
            D+  
Sbjct: 64 LPDLIN 69


>gi|296133194|ref|YP_003640441.1| DNA repair protein RecN [Thermincola sp. JR]
 gi|296031772|gb|ADG82540.1| DNA repair protein RecN [Thermincola potens JR]
          Length = 569

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           I  L I  F    ++ L       +  G+ G GK+ I++A+  +    G     R  +  
Sbjct: 2   IIRLIIKNFALIDNIELEISPGFNVLSGETGAGKSIIIDAMGVIIGSAGLHEYIRTGADK 61

Query: 63  DVTR--IGSPSFFSTFARVEGMEGLADISIKLETRD--DRSVRCLQINDVVI 110
            +         + +  A++E M   ++    L TR+         +IN  ++
Sbjct: 62  ALVEALFDISGYRAVAAKLEDMGFASEDGTLLLTRELQRNGKNVCRINGRIV 113


>gi|281203103|gb|EFA77304.1| structural maintenance of chromosome protein [Polysphondylium
           pallidum PN500]
          Length = 1037

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 14/133 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL---EAISFLSPGRGFRRASYAD 63
           I  + ++ F  Y  L  V   +  + +G NG GK++I+          P    R    + 
Sbjct: 68  IVRVKLTNFVTYTELEFVPGPRLNVIIGPNGSGKSSIICALALGLGGGPALLGRAKQVSH 127

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--ELNKHLR 121
             + G          +E      +I I+   R D S    ++N   +   D  EL +  +
Sbjct: 128 FIKHGEDHAII---EIELYVQTGNIVIQRLIRKDNSS-EYRVNRSKVTANDLHELIRKHK 183

Query: 122 ISW-----LVPSM 129
           I        +P  
Sbjct: 184 IQVDNLCQFLPQD 196


>gi|300708338|ref|XP_002996350.1| hypothetical protein NCER_100567 [Nosema ceranae BRL01]
 gi|239605645|gb|EEQ82679.1| hypothetical protein NCER_100567 [Nosema ceranae BRL01]
          Length = 975

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 6/124 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYAD 63
           I  L +  F  +  + + F    T   G NG GK+ I+ ++  L   R     R  S+ +
Sbjct: 12  ILKLELINFMCHDHIVIDFKKPFTCIGGRNGSGKSAIMISLGILFGQRSSNLERGNSFRN 71

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           + + G              +   D     I LE R         I +   R+     + L
Sbjct: 72  LIKTGQQFCVIKCVLNNTKKYCYDFFGDFIILEKRLTHKSSSFSITNKQKRLHSNKMEDL 131

Query: 121 RISW 124
               
Sbjct: 132 EYIL 135


>gi|209523657|ref|ZP_03272211.1| SMC domain protein [Arthrospira maxima CS-328]
 gi|209496062|gb|EDZ96363.1| SMC domain protein [Arthrospira maxima CS-328]
          Length = 406

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +  + +  F ++     +  +    I +G NG GK+N+L+AI+ L
Sbjct: 2  LSEITLENFFSFRKPTTIKLNPGVNILLGINGSGKSNLLKAIALL 46


>gi|188581835|ref|YP_001925280.1| SMC domain protein [Methylobacterium populi BJ001]
 gi|179345333|gb|ACB80745.1| SMC domain protein [Methylobacterium populi BJ001]
          Length = 687

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +++ +L +  FR +    R+ F    T+  G NGVGK+ + +A+ F   G
Sbjct: 1  MRLDYLELCGFRGFRERQRVDFGPGFTVICGRNGVGKSTLCDAVEFAVTG 50



 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSD---LIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
              +L+   +  S  R    G        L +   +        S+G+++   +   L+ 
Sbjct: 521 LLNELYQRLRPHSEWRTIDYGIRGDVKRFLSLRVGNGLNPQFVFSSGQRRAAGLAFLLSV 580

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSL 358
              +S        L+LD+   H+D+ +   L  +++ +   G QI     D S+ + L
Sbjct: 581 --HLSRPWCTWRTLMLDDPVQHIDDFRALHLVEVLSALQRSGRQIVCAVEDPSLAELL 636


>gi|148998632|ref|ZP_01826071.1| DNA repair protein RecN [Streptococcus pneumoniae SP11-BS70]
 gi|168577218|ref|ZP_02723027.1| DNA repair protein RecN [Streptococcus pneumoniae MLV-016]
 gi|307067852|ref|YP_003876818.1| DNA repair ATPase [Streptococcus pneumoniae AP200]
 gi|147755469|gb|EDK62517.1| DNA repair protein RecN [Streptococcus pneumoniae SP11-BS70]
 gi|183577203|gb|EDT97731.1| DNA repair protein RecN [Streptococcus pneumoniae MLV-016]
 gi|306409389|gb|ADM84816.1| ATPase involved in DNA repair [Streptococcus pneumoniae AP200]
          Length = 555

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 73/209 (34%), Gaps = 27/209 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+P                      +G+E   +I I+ E          ++N  ++   
Sbjct: 57  HGAPKAEIEGLFSVENSRLLQEIFDEQGLELGDEIIIRREI-LQNGRSISRVNGQMVNLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMR 167
           V+  + +HL         + +              F D   + +   ++     + ++ +
Sbjct: 116 VLRAIGQHLVDIHGQHDHEELMR--PQLHIQMLDEFGDAAFWDLKETYQTSFDAYRKMRK 173

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
               +        +    +E QM E+   
Sbjct: 174 QVLEVKKNQQEHKARIEMLEFQMTEIEAA 202


>gi|113477675|ref|YP_723736.1| ATPase-like protein [Trichodesmium erythraeum IMS101]
 gi|110168723|gb|ABG53263.1| ATPase-like protein [Trichodesmium erythraeum IMS101]
          Length = 361

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          K L I  FR +  + +    +  +  G N VGKT +LEAI  L+    
Sbjct: 3  KSLIIKNFRCFQEITIDNIERINLIGGVNNVGKTALLEAILLLNSLNS 50


>gi|331007039|ref|ZP_08330272.1| Chromosome partition protein smc [gamma proteobacterium IMCC1989]
 gi|330419149|gb|EGG93582.1| Chromosome partition protein smc [gamma proteobacterium IMCC1989]
          Length = 1168

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 93/282 (32%), Gaps = 37/282 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVSFPSNLCAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRI--------GSPSFFSTFARVEGM---EGLADISIKLETRDDR-SVRCLQINDV 108
             DV           G  S    F   +G    E      I +  +  R S     +N  
Sbjct: 61  MTDVIFNGSGGRKPVGQASIELVFDNSDGTLLGEYAGFGEIAIRRKVTRDSQNIYYLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P            R+      E R +++        +++ R 
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYAIIEQGMISRLIESKPDELRVYVEEAAG--ISKYKERR 177

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINA---LSSLIME 214
            D E  MR  N  L      +     +E Q+  L    K      E       L + +  
Sbjct: 178 RDTENRMRRTNENLERL---TDIREELERQLVRLERQAKSAEKYAEFKKEERDLKAQLQA 234

Query: 215 YVQKENFPHIKLSLTGFLDGKFD-QSFCALKEEYAKKLFDGR 255
              +      K    G  + +   +SF   +      +   R
Sbjct: 235 LRYRLLDDEAKQRQAGISELELKVESFVTDRVSLESSIEKSR 276


>gi|56964224|ref|YP_175955.1| DNA repair protein RecN [Bacillus clausii KSM-K16]
 gi|56910467|dbj|BAD64994.1| DNA repair protein RecN [Bacillus clausii KSM-K16]
          Length = 565

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    SL + F+   T+  G+ G GK+ I++AI+ L  GRG      A+  R
Sbjct: 2  LMELSIKNFAIIRSLTVPFEKGLTVLTGETGAGKSIIIDAIALLLGGRG-----SAEFVR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G        A +EG+
Sbjct: 57 FGEKR-----AEIEGL 67


>gi|330719970|gb|EGG98424.1| hypothetical protein imdm_26 [gamma proteobacterium IMCC2047]
          Length = 595

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 4  RIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           +K   L I  FR       +      T  VG N  GKTNIL+AI  +  G
Sbjct: 25 DMKFDSLRIRNFRTLGNEQFVDLRNGLT-IVGPNSSGKTNILKAIEMIFTG 74


>gi|326316688|ref|YP_004234360.1| hypothetical protein Acav_1876 [Acidovorax avenae subsp. avenae
          ATCC 19860]
 gi|323373524|gb|ADX45793.1| hypothetical protein Acav_1876 [Acidovorax avenae subsp. avenae
          ATCC 19860]
          Length = 802

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K++   +  +R    + +  D + +IFVG N  GKT+ ++ +  +  G
Sbjct: 1  MKLQAYRLQNYRRLRDVVIELDDEISIFVGANNSGKTSAVQGLYSMLRG 49


>gi|296390106|ref|ZP_06879581.1| chromosome segregation protein SMC [Pseudomonas aeruginosa PAb1]
          Length = 1162

 Score = 50.7 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 95/290 (32%), Gaps = 35/290 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   GS +    + A +E +   A+            I +  R  R       +N  
Sbjct: 61  MTDVIFNGSNTRKPVSQASIELIFDNAETTLVGEYAQYAEISIRRRVSRDGQNTYFLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               + R F++             +
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEARPEDLRNFIEE---------AAGI 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             ++   R     +     + +  + +  ++     +++               E   K 
Sbjct: 171 SKYKERRRETESRIRRTQENLARLTDLREELGRQLERLHRQAQSAEKYQEHKAEERQLKA 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
               ++        G+ ++     +  +   + + R  D+   R   G H
Sbjct: 231 QLGAVRWRDLNEQVGQRERIIGDQEIAFEALVAEQRGADAGIERLRDGHH 280


>gi|317140719|ref|XP_001818375.2| subunit of the multiprotein cohesin complex [Aspergillus oryzae
          RIB40]
          Length = 1242

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R  + 
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTNL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|159904958|ref|YP_001548620.1| ATP-dependent OLD family endonuclease [Methanococcus maripaludis
           C6]
 gi|159886451|gb|ABX01388.1| ATP-dependent endonuclease of the OLD family-like protein
           [Methanococcus maripaludis C6]
          Length = 614

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 62/406 (15%), Positives = 126/406 (31%), Gaps = 67/406 (16%)

Query: 7   IKFLNISEFRNYASL-RLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFR------- 57
           +    I  +++      +       TI  G N  GKT++LEA+   + G+  R       
Sbjct: 4   LTKFRIKNYKSIKDSGDVYLSPDNITILAGMNESGKTSVLEALEDFNVGKTVRESAKPIC 63

Query: 58  RASYADVTRI---GSPSFFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRV 112
                +++                +  +    D S  I+LE +   S   L+ ND+   +
Sbjct: 64  GNLDPEISLFFKLNVEELEKISKDISNIYLSNDFSKNIELEVKKVGSTYFLENNDIYSCL 123

Query: 113 VDELNKHLRISW--------LVPSMDRIF---SGLSMERRRFLDRMVFAIDPRHRRRMID 161
            D     +            L  ++D IF        E R+ +D+ +     +       
Sbjct: 124 EDYNIGIINTLVEIENEINTLSKNIDVIFPTEFNSVEEFRKIMDQKIKDGKSKITDDFN- 182

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
            E++    N L  E    + +   I+  +      +     E I     +I +  +    
Sbjct: 183 -EKIKTQLNALFDEAQKYTLYFLDIDKTLINYIENVVKK--EYIPNF--IIFKTYKDSKI 237

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG-------------- 267
           P+I      F + + D+    L++     +   +  D   ++   G              
Sbjct: 238 PNI----IPFANLETDEFIKDLQKVSNLDINLIKSTDRQRKKNHHGAININLQEDYSKYW 293

Query: 268 -PHRSDLIVDYCDKAITI-----------AHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
               S+L + + +  +                S G+Q  +   I +       +  G   
Sbjct: 294 TQSESNLEITWDNNNVEFWVKEDNTSYTPEQRSKGKQWHLAFYIRITA----RSKEGKNN 349

Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIGSQ--IFMTGTDKSVFDSLN 359
           ILL+DE    L    +  +   + D      I  T     + + L+
Sbjct: 350 ILLIDEPGLFLHAQAQEDIINKLEDASKTMSIIYTTHSPYLLNKLH 395


>gi|149190220|ref|ZP_01868495.1| predicted ATP-dependent endonuclease [Vibrio shilonii AK1]
 gi|148835967|gb|EDL52929.1| predicted ATP-dependent endonuclease [Vibrio shilonii AK1]
          Length = 544

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +K++ ++IS FR    L L  +   T  +G+N  GK+++L+A+  + P          ++
Sbjct: 1   MKLERIDISGFRGIKRLSLALND-LTTLIGENTWGKSSLLDALCVVLPA-------DGEL 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKL---ETRDDRSVRCLQI 105
            +     F   +A          I +     E  +  S R  ++
Sbjct: 53  YQFEMKDFHVDYAASHPQTRHLQIILSFVATERNETHSGRYRKL 96


>gi|330795458|ref|XP_003285790.1| hypothetical protein DICPUDRAFT_29916 [Dictyostelium purpureum]
 gi|325084254|gb|EGC37686.1| hypothetical protein DICPUDRAFT_29916 [Dictyostelium purpureum]
          Length = 1183

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          + I+ + I  F++YA+  +   FD       G NG GK+NIL++I F   +S     R  
Sbjct: 1  MYIQDIVIDGFKSYANRTVIEGFDPTFNAITGLNGSGKSNILDSICFVLGISNLSQVRVD 60

Query: 60 SYADVT-RIGSPSFFSTFARV 79
          S  ++  + G          +
Sbjct: 61 SLQELVYKKGQAGIVKASVTI 81


>gi|296415904|ref|XP_002837624.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633500|emb|CAZ81815.1| unnamed protein product [Tuber melanosporum]
          Length = 1194

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 99/269 (36%), Gaps = 24/269 (8%)

Query: 92   LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS-----MDRIFSGLSMERRRFLDR 146
            +E +  +  R +    ++     E ++++R   ++P       +R+ S   ++R   ++ 
Sbjct: 896  IERQKKKIERSMAKRALLTDKAQECSRNIRDLGVLPEEAFEKFERLASNQVVKRLHKVNE 955

Query: 147  MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
             +      +++    +    + R+ L+       S  SSIE  +  L  + + A      
Sbjct: 956  ALKKYSHVNKKAFEQYANFTKQRDTLIKRREELDSSQSSIEELIQVLDQRKDEAIERTFR 1015

Query: 207  ALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
             +S    E  +K       +L +   +D +      +  ++      +GR    +   T 
Sbjct: 1016 QVSKDFAEIFEKLVPAGRGRLVIQRRVDREERDDEASGDDD-----GEGR-KGGVENYTG 1069

Query: 266  IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
            +G   S       D+   I   S G++ +  + +  A           AP  L DE+ A+
Sbjct: 1070 VGISVS--FNSRHDEQQRIQQLSGGQKSLCALALIFA-----IQQCDPAPFYLFDEVDAN 1122

Query: 326  LDEDKRNALFRIVTDI-----GSQIFMTG 349
            LD   R A+ ++V D+       Q   T 
Sbjct: 1123 LDAQYRTAVAQMVKDLSSRAENGQFICTT 1151



 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 17 NYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          +Y    +   F  +  + VG NG GK+N   AI F
Sbjct: 27 SYKEQTVIEPFSPKTNVIVGHNGSGKSNFFAAIRF 61


>gi|254569540|ref|XP_002491880.1| Subunit of the multiprotein cohesin complex required for sister
          chromatid cohesion in mitotic cells [Pichia pastoris
          GS115]
 gi|238031677|emb|CAY69600.1| Subunit of the multiprotein cohesin complex required for sister
          chromatid cohesion in mitotic cells [Pichia pastoris
          GS115]
          Length = 1207

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS------PGRGF 56
          + IK + I  F+ Y +  +      ++ + VG NG GK+N   AI F+         R  
Sbjct: 1  MYIKRIVIQGFKTYKNTTIIEDISPEYNVVVGRNGSGKSNFFAAIRFVLSDDYTHMTRSQ 60

Query: 57 RRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
          R++    +   GS +  S +  +        I +
Sbjct: 61 RQS----LIHEGSGTVMSAYVEIVFDNTDRRIQV 90



 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 68/211 (32%), Gaps = 12/211 (5%)

Query: 144  LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARV 202
            +++ +      +++    +    + R+ L+       S   SIE  + ++  +  + A +
Sbjct: 962  VNQGLKQFSHINKKAWDQYNSFAKKRDELVQRREELDSAKDSIED-LIQVSEQRKDEAIL 1020

Query: 203  EMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                 LS    +  +        +L L      +  +   + K        +    +   
Sbjct: 1021 NTFKKLSEAFAQVFELLVPNGMARLVLEKRESIQEKEHPQSNKMNNPGHFENDGDNEPDI 1080

Query: 262  RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
              T  G   S       D+   I   S G++ +  + +  A           AP  L DE
Sbjct: 1081 E-TYSGVSISVSFNSKGDEQQRIEQLSGGQKSLCAIALIFA-----IQKCDPAPFYLFDE 1134

Query: 322  ISAHLDEDKR---NALFRIVTDIGSQIFMTG 349
            + A+LD   R     L   ++   +Q   T 
Sbjct: 1135 VDANLDTQYRTSVARLINRLSRENAQFICTT 1165


>gi|221640348|ref|YP_002526610.1| Chromosome segregation protein SMC [Rhodobacter sphaeroides KD131]
 gi|221161129|gb|ACM02109.1| Chromosome segregation protein SMC [Rhodobacter sphaeroides KD131]
          Length = 1151

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 41/237 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R A 
Sbjct: 1   MRFTRLRLNGFKSFVDPTDLVIHEGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGAG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G+      +F      ++  + LA         I++  R  R +    + N  
Sbjct: 61  MEDVIFAGAATRPARNFAEVALVLDNADRLAPAGFNDADTIEIVRRITRDAGSAYKANTK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR-----MVFAIDPRH 155
            +R  D   L          P++ R      + +     RRR L+       ++      
Sbjct: 121 DVRARDIQMLFADASTGAHSPALVRQGQISELINAKPKARRRILEEAAGISGLYQRRHEA 180

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSS 210
             R+   E+ +                   +  Q++ L    K      E+   L  
Sbjct: 181 ELRLAATEQNL----------ARVEDVLDQLAQQLSTLARQAKQAARYREIGEELRR 227


>gi|145349013|ref|XP_001418935.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144579165|gb|ABO97228.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1060

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 90/245 (36%), Gaps = 39/245 (15%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRRASYA 62
            + +  F  +A+ ++    +     G+NG GK+ IL A++        S GR     S  
Sbjct: 27  RVTMHNFMCHANAKVELGPRINYVTGENGSGKSAILTALAVALGAKMKSIGRSS-TKSAK 85

Query: 63  DVTRIGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRV-------- 112
            + + G+ SF      +  +G +             ++ +     N + I+         
Sbjct: 86  GMIKTGA-SFARVVVVISNDGEDAFKPDVFGRSITVEKVLNATGANSLKIKSESGETVGT 144

Query: 113 ----VDELNKHLRISWLVP------SMDR--IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
               +++L  H  I    P       M +  + +G + ++ +F       ID      ++
Sbjct: 145 RVDELNKLADHFCIDVDNPITVMTQDMAKKFLHTGDATKKYQFF------IDATLLSDLM 198

Query: 161 DFERLMRGRNRLLTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
           + + + + ++  + +           +  ++AEL  +++    E +  L S  +++  + 
Sbjct: 199 ELQEIAKNKSNEMKDVLNEHLETIPKLREEVAELTHELHS--FERVQELRSKAIDFRNRL 256

Query: 220 NFPHI 224
            +  +
Sbjct: 257 AWSKV 261


>gi|320201135|gb|EFW75718.1| hypothetical protein ECoL_01560 [Escherichia coli EC4100B]
          Length = 864

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 79/209 (37%), Gaps = 29/209 (13%)

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-----------RVEMINALSSLIMEY 215
           + R   L +         ++  +  EL  +I +A           R+++ N L+S+    
Sbjct: 501 KLREARLYKQASKKRKIDALIKESKELKARIMLAEKLEGLISLVGRLKLYNTLNSISFSA 560

Query: 216 VQKENFPHIKL----SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           + K+     KL     ++  L    D+ F  L   + K +   R        +L+     
Sbjct: 561 LSKKVSDKSKLFANSIISNALKKDLDEEFSKLGVSHIKTVLKPRVSKGKVFYSLL----- 615

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
            L +   +K   I   S GEQ+ V +  FLA  +L +++ G    ++ D+  + LD  +R
Sbjct: 616 -LDIPISNKVDLI--LSEGEQRAVSLASFLAELKLANHSCG----IIFDDPVSSLDHHRR 668

Query: 332 NALFRIV--TDIGSQIFMTGTDKSVFDSL 358
             +   +       Q+ +   D +    L
Sbjct: 669 RRVATRLVEEAKNRQVIILTHDIAFLSEL 697


>gi|228907924|ref|ZP_04071775.1| hypothetical protein bthur0013_20880 [Bacillus thuringiensis IBL
          200]
 gi|228851683|gb|EEM96486.1| hypothetical protein bthur0013_20880 [Bacillus thuringiensis IBL
          200]
          Length = 798

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE-AISFLSPGRGF 56
          + I+ LNI  ++    +++    +  +F+G N  GKT+ +E  + FL+  + F
Sbjct: 1  MFIEKLNIKNYKKLKDVKVCLSQKQNLFIGPNNSGKTSAIEILVKFLTDKKSF 53


>gi|225414557|ref|ZP_03761746.1| hypothetical protein CLOSTASPAR_05780 [Clostridium asparagiforme
          DSM 15981]
 gi|225041913|gb|EEG52159.1| hypothetical protein CLOSTASPAR_05780 [Clostridium asparagiforme
          DSM 15981]
          Length = 434

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 28/46 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I  L +++FR    L+L  D +  I  G NGVGK+ IL A++ L
Sbjct: 1  MRINALYLNDFRGIHELKLSLDGKSMILFGINGVGKSTILSAVNLL 46


>gi|153003591|ref|YP_001377916.1| chromosome segregation protein SMC [Anaeromyxobacter sp. Fw109-5]
 gi|152027164|gb|ABS24932.1| chromosome segregation protein SMC [Anaeromyxobacter sp. Fw109-5]
          Length = 1198

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          ++I+ L+I  F+++     + FD   T  VG NG GK+N+ +AI ++   +     R  S
Sbjct: 1  MRIRRLDIVGFKSFMDKTVVAFDEGVTGVVGPNGCGKSNVADAIRWVLGEQSARHLRGRS 60

Query: 61 YADVTRIGSPS 71
            DV   GS S
Sbjct: 61 MEDVIFNGSES 71


>gi|332559345|ref|ZP_08413667.1| chromosome segregation protein SMC [Rhodobacter sphaeroides WS8N]
 gi|332277057|gb|EGJ22372.1| chromosome segregation protein SMC [Rhodobacter sphaeroides WS8N]
          Length = 1151

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 41/237 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R A 
Sbjct: 1   MRFTRLRLNGFKSFVDPTDLVIHEGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGAG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G+      +F      ++  + LA         I++  R  R +    + N  
Sbjct: 61  MEDVIFAGAATRPARNFAEVALVLDNADRLAPAGFNDADTIEIVRRITRDAGSAYKANTK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR-----MVFAIDPRH 155
            +R  D   L          P++ R      + +     RRR L+       ++      
Sbjct: 121 DVRARDIQMLFADASTGAHSPALVRQGQISELINAKPKARRRILEEAAGISGLYQRRHEA 180

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSS 210
             R+   E+ +                   +  Q++ L    K      E+   L  
Sbjct: 181 ELRLAATEQNL----------ARVEDVLDQLAQQLSTLARQAKQAARYREIGEELRR 227


>gi|301612259|ref|XP_002935632.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of
           chromosomes protein 5-like [Xenopus (Silurana)
           tropicalis]
          Length = 1068

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 36/104 (34%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y    +       + VG NG GK++I+ AI     G+         V  
Sbjct: 31  ITRIKMENFLTYDHCEVFPGPHLNMIVGANGTGKSSIVCAICLGLAGKTAFIGRADKVGF 90

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
                    F  +E  +   +++IK E +   +     IN    
Sbjct: 91  YVKRGCQKGFVELELYKASGNVTIKREIQVANNQSVWYINHKNA 134


>gi|300870126|ref|YP_003784997.1| putative ATPase [Brachyspira pilosicoli 95/1000]
 gi|300687825|gb|ADK30496.1| predicted ATPase [Brachyspira pilosicoli 95/1000]
          Length = 338

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I+ L I  FR +  L++    +    VG N  GKT++LE+IS +
Sbjct: 2  IRDLYIENFRGFDKLKIDNIKKINFLVGKNNCGKTSVLESISLM 45


>gi|198419069|ref|XP_002125440.1| PREDICTED: similar to Smc3 protein, partial [Ciona intestinalis]
          Length = 1192

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF 49
          + IK ++I  FR+Y  S  +  F ++H I VG NG GK+N   AI F
Sbjct: 1  MHIKRVSIQGFRSYRESTEIEPFSSRHNIIVGRNGSGKSNFFCAIQF 47



 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 273  LIVDYCDKAITIAHGST---GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
            + V +  KA           G++ +V + +  A           AP  L DEI   LD D
Sbjct: 1085 IKVSFSGKAAETREMQQLSGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDPD 1139

Query: 330  KRNALFRIVTDIGS--QIFMTGTDKSVFDS 357
             R+++  ++ ++ S  Q   T     + DS
Sbjct: 1140 HRSSVANMLRELSSSAQFITTTFRPELLDS 1169


>gi|75910885|ref|YP_325181.1| condensin subunit Smc [Anabaena variabilis ATCC 29413]
 gi|75704610|gb|ABA24286.1| condensin subunit Smc [Anabaena variabilis ATCC 29413]
          Length = 1208

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + IK + ++ F+++  +  +   +  T+  G NG GK+NIL+A+ F   L+  +G R   
Sbjct: 2  VHIKRVELTNFKSFGGTTSVPLLSGFTVVSGPNGSGKSNILDALLFCLGLASSKGMRADR 61

Query: 61 YADVTR 66
            D+  
Sbjct: 62 LPDLVN 67


>gi|67594865|ref|XP_665922.1| SMC2 protein [Cryptosporidium hominis TU502]
 gi|54656795|gb|EAL35692.1| SMC2 protein [Cryptosporidium hominis]
          Length = 1236

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          + I+ + +  F++Y    +   F+ +     G NG GK+NIL++I F   ++     R  
Sbjct: 1  MYIEEIILDGFKSYQKRTVIGRFNPKFNAITGLNGSGKSNILDSICFVLGITNLSQIRIN 60

Query: 60 SYADVT 65
             ++ 
Sbjct: 61 KLEELV 66


>gi|110633125|ref|YP_673333.1| condensin subunit Smc [Mesorhizobium sp. BNC1]
 gi|110284109|gb|ABG62168.1| condensin subunit Smc [Chelativorans sp. BNC1]
          Length = 1152

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K   L +  F+++      V +   T  VG NG GK+N++EA+ ++   S  +  R + 
Sbjct: 1   MKFTKLRLLGFKSFVEPGEFVIEPGLTGVVGPNGCGKSNLVEALRWVMGESSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNADRTAPPAFNDADELQVSRRIEREAGSVYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARARDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|163858950|ref|YP_001633248.1| hypothetical protein Bpet4630 [Bordetella petrii DSM 12804]
 gi|163262678|emb|CAP44981.1| hypothetical protein Bpet4630 [Bordetella petrii]
          Length = 869

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 58/140 (41%), Gaps = 10/140 (7%)

Query: 241 CALKEEYAKKLFD----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
            AL+ ++A+++ +    G  ++   + +  G  R  + +     A      S GE + V 
Sbjct: 580 DALRTQFAQEIANFDIAGLAVELKQQTSAQGVPRFKVALTRKPDAPVGQVLSEGEHRCVA 639

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSV 354
           +  F+A    + N +G    ++ D+  + LD   R A+ + +    +  Q+ +   D + 
Sbjct: 640 LAAFMAELATLGNKSG----IVFDDPMSSLDHMHREAVAQRLVAEAAHRQVIVFTHDLAF 695

Query: 355 FDSLNETAKFMRISNHQALC 374
              L   A  ++   H A+ 
Sbjct: 696 LFELERAAAELQPKPHVAIS 715


>gi|149374975|ref|ZP_01892748.1| chromosome segregation SMC protein [Marinobacter algicola DG893]
 gi|149360864|gb|EDM49315.1| chromosome segregation SMC protein [Marinobacter algicola DG893]
          Length = 1164

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + +S F+++     + F +  T  VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLSGFKSFVDPTTVPFPSNMTAVVGPNGCGKSNIIDAVRWVMGESSAKYLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGLADI------SIKLETRDDRSVRC-LQINDV 108
            +DV   GS +       S     +  +G A         I +  R  R  +    +N  
Sbjct: 61  MSDVIFNGSSARKPVGQASIELVFDNSDGSAPGEFVRFNEISVRRRVSREGQSEYFLNGS 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 KCRRRD 126


>gi|119492495|ref|XP_001263613.1| cohesin complex subunit (Psm1), putative [Neosartorya fischeri
          NRRL 181]
 gi|119411773|gb|EAW21716.1| cohesin complex subunit (Psm1), putative [Neosartorya fischeri
          NRRL 181]
          Length = 1260

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y    + L  DA  T  +G NG GK+N ++AISF+   +    R  + 
Sbjct: 3  KLIRLELFNFKSYKGHHVLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTNL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|88703480|ref|ZP_01101196.1| chromosome segregation SMC protein [Congregibacter litoralis KT71]
 gi|88702194|gb|EAQ99297.1| chromosome segregation SMC protein [Congregibacter litoralis KT71]
          Length = 1166

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 79/213 (37%), Gaps = 29/213 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +  +  VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTAVHFPSNMSAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADISIK------LETRDDRSVRC-----LQINDV 108
            ADV   GS +      A +E +   +D  +        E    R V         +N  
Sbjct: 61  MADVIFNGSGNRQPVGQASIELVFDNSDGGVGGEYASYAEIGIRRQVTRDGQSEYFLNGT 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             R  D         L            + R+      E R F++        +++ R  
Sbjct: 121 KCRRRDITDIFLGTGLGPRSYAIIEQGMISRLIESKPEELRVFIEEAAG--ISKYKERRR 178

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           + E  MR   R L      +     +E Q+  L
Sbjct: 179 ETESRMR---RTLENLERLTDLRDELERQLQHL 208



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 79/231 (34%), Gaps = 30/231 (12%)

Query: 139  ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198
            E RRF  + +         ++ +    + G    L E   D    ++ + ++     +I 
Sbjct: 906  ESRRFAVQGLEHQQNTMLGQLEE----LGGNFEELLEALPDEVDMAAWQGELERYANRIA 961

Query: 199  I----------------ARVEMINALSSLIMEYVQKENFPHIKL--SLTGFLDGKFDQSF 240
                              R   ++A +  +   +        K+           FDQ  
Sbjct: 962  RLGPINLAAVDEYQQQSERKRYLDAQNEDLESALDTLEAAIRKIDKETRNRFKDTFDQVN 1021

Query: 241  CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
              L+E + +    G     M+   L+    S L      K  TI   S GE+ +  + + 
Sbjct: 1022 SGLQELFPRVFGGGAASLEMTGDDLLDTGVSILAQPPGKKNSTIHLLSGGEKALTAIALV 1081

Query: 301  LAHARLISNTTGFAPILLLDEISAHLDED---KRNALFRIVTDIGSQIFMT 348
             +  +L       AP  +LDE+ A LD+    +   + + ++D    IF+T
Sbjct: 1082 FSIFQL-----NPAPFCMLDEVDAPLDDANVGRYARMVKEMSDKVQFIFIT 1127


>gi|121604048|ref|YP_981377.1| putative ATP-binding protein [Polaromonas naphthalenivorans CJ2]
 gi|120593017|gb|ABM36456.1| DNA replication and repair protein RecF [Polaromonas
          naphthalenivorans CJ2]
          Length = 349

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          M +++ IK L +     ++ ++L F     + VG+NG GKT++L+ +++ +    
Sbjct: 1  MLDKMHIKNLTV-----FSDVKLKFGQNLNVIVGENGAGKTHLLK-MAYCAMATS 49


>gi|326572197|gb|EGE22193.1| DNA repair protein RecN [Moraxella catarrhalis BC7]
          Length = 568

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 67/231 (29%), Gaps = 23/231 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L            + FD +  +  G+ G GK+ IL+A+S     R     + + + R
Sbjct: 2   LISLTFENLALIEQKHIDFDDRFNVITGETGAGKSLILDALSLCVGER-----ADSSMVR 56

Query: 67  IGSPSF-----------FSTFARVEGMEGL-ADISIKLETRDDRSVR-CLQINDVVIRVV 113
            G                   A  E  +    D ++ +  +     R    IN V   + 
Sbjct: 57  HGCDEASVFGEFDISGNAQVIAWFEQHDRKLEDETLLIRRKISNQGRSKSWINGVPASIS 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           +  +    +  +      +          +LDR+               +        L 
Sbjct: 117 ELKSLGSMLVNIHSQHAGLELLKPQFIVDWLDRIG-----GFGDLKAAAKTAFHHYQTLK 171

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +     S  +    +MA L  K+      ++     +  EY +  N   +
Sbjct: 172 RQADDARSQSAQRADRMALLSAKLTDIEPLLLVDFQEIEAEYDELSNLESL 222


>gi|299140895|ref|ZP_07034033.1| DNA repair protein RecN [Prevotella oris C735]
 gi|298577861|gb|EFI49729.1| DNA repair protein RecN [Prevotella oris C735]
          Length = 553

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 82/245 (33%), Gaps = 36/245 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F     L + F++  ++  G+ G GK+ IL AI+ L    +  +  +     
Sbjct: 2   LKQLYIKNFTLIDELNIAFNSGFSVITGETGAGKSIILGAINLLLGQRADTKVIKTDKDK 61

Query: 63  DVT-------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VV 113
            V        + G   FF   A  +      D  I+ E   +   R   +ND+ ++  ++
Sbjct: 62  CVIEAHFNLSKYGMDQFF---ADNDIDYDSEDCIIRREINKNGKSRAF-VNDMPVQLTLM 117

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRNR 171
            EL + L    +      +       +   +D +         ++     + +       
Sbjct: 118 RELGEML--VDIHSQHQNLLLQKENFQLNVVDIIAHDEQERKNYQESFKAYRKA------ 169

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                    +    +E  +A+        R +  N +    M+  ++EN       L+  
Sbjct: 170 --------HADLKQLEENIAQGKENEEFMRFQF-NEIEKANMKADEQENIEQETEQLSHS 220

Query: 232 LDGKF 236
            + K 
Sbjct: 221 EEIKE 225


>gi|290960938|ref|YP_003492120.1| hypothetical protein SCAB_65791 [Streptomyces scabiei 87.22]
 gi|260650464|emb|CBG73580.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 403

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 22/115 (19%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRG-------- 55
           +I  L +  FR     +L      T+ VG N  GK+N+L A+ FL     +G        
Sbjct: 4   RILGLTVRNFRTLTDTKLPLGP-LTVMVGPNAAGKSNVLHALEFLGDVTRKGIEPALEER 62

Query: 56  -------FRRASYADV--TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101
                  FR    + +    IG    +S FA  E  +G  ++S+      +   R
Sbjct: 63  GGFDALAFRGGR-SPMSKITIGVEGIWSDFASEEVPDG-YELSVSQRRLPEPRNR 115


>gi|225454979|ref|XP_002278113.1| PREDICTED: similar to MIM (HYPERSENSITIVE TO MMS, IRRADIATION AND
           MMC); ATP binding [Vitis vinifera]
          Length = 1057

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 77/269 (28%), Gaps = 33/269 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I  + +  F  ++SL++          G NG GK+ IL A+      R     R  +  +
Sbjct: 22  ILKIRLENFMCHSSLQIELGEWLNFVTGQNGSGKSAILTALCVAFGSRAKETQRATTLKE 81

Query: 64  VTRIGSPSFF---------------STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             + G                      +  V  +E    +S       D   + +     
Sbjct: 82  FIKTGCSYAVIQVEIKNEGEDAFKPEIYGDVIIVERRISVSTSSTVLKDHQGKRVASRKE 141

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
               + EL +H  I    P           + R FL       + + + +      L++ 
Sbjct: 142 D---LHELVEHFNIDVENPC----VIMSQDKSREFLHSG----NDKDKFKFFFKATLLQQ 190

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
            N LL          +++  ++ +    I       +N L   I      E        L
Sbjct: 191 VNDLLVNIGTRLDSANTLVEELEKSIEPILKE----LNELQVKIRNMEHVEEISQQVQQL 246

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
              L   +        +E + K+   +  
Sbjct: 247 KKKLAWSWVYDVDRQLQEQSAKIEKLKDR 275


>gi|161525810|ref|YP_001580822.1| DNA repair protein RecN [Burkholderia multivorans ATCC 17616]
 gi|189349469|ref|YP_001945097.1| DNA repair protein [Burkholderia multivorans ATCC 17616]
 gi|160343239|gb|ABX16325.1| DNA repair protein RecN [Burkholderia multivorans ATCC 17616]
 gi|189333491|dbj|BAG42561.1| DNA repair protein [Burkholderia multivorans ATCC 17616]
          Length = 549

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 91/251 (36%), Gaps = 30/251 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FDA  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDAGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++     A+ ++ L    D + R    IN     +  + 
Sbjct: 57  TGCSRADITAEFTPHDRVARWLDEHAFDAEDTVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 ELGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAE--AANVARAWRVWRDATQAID 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+ ++ +  H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQPGEW-EEVSAEHKRLSHSANLIE 223

Query: 235 KFDQSFCALKE 245
               +  AL E
Sbjct: 224 GVRGALDALSE 234


>gi|73969294|ref|XP_538328.2| PREDICTED: similar to SMC1 structural maintenance of chromosomes
           1-like 2 [Canis familiaris]
          Length = 1235

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 62/155 (40%), Gaps = 16/155 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           +++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3   RLEVLLVENFKSWRGHQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKTANLRVKNIQ 62

Query: 63  DVTRIGSP--SFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKH 119
           ++   G+      S+ A V+ +        K  TR  R        +D  +     + + 
Sbjct: 63  ELI-HGAHIGRPVSSSASVKIVYVEESGEEKTFTRIIRGGCSEFHFDDNPVSRSAYIAEL 121

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
            +I  +V + + +               ER +F +
Sbjct: 122 EKIGIIVKARNCLVFQGTVESISMKKPKERTQFFE 156


>gi|157278443|ref|NP_001098324.1| meiosis-specific cohesin subunit SMC1 beta [Oryzias latipes]
 gi|41349746|dbj|BAD08304.1| meiosis-specific cohesin subunit SMC1 beta [Oryzias latipes]
          Length = 1082

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63
          +K L+I  F+++     +    + +  +G NG GK+N+++A+SF    R    R     D
Sbjct: 4  LKQLDIENFKSWRGKHVIGPFMKFSCIIGTNGSGKSNVMDALSFAIGERAASLRVKHLRD 63

Query: 64 VTR 66
          +  
Sbjct: 64 LIH 66


>gi|297570876|ref|YP_003696650.1| hypothetical protein Arch_0273 [Arcanobacterium haemolyticum DSM
          20595]
 gi|296931223|gb|ADH92031.1| conserved hypothetical protein [Arcanobacterium haemolyticum DSM
          20595]
          Length = 382

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I  + +  +RN+  +    D +    VG N  GK+N+L+   FL
Sbjct: 1  MRISQVRVKNWRNFRDIEFSLDRRL-FIVGANATGKSNLLDVFRFL 45


>gi|262165112|ref|ZP_06032849.1| DNA repair protein RecN [Vibrio mimicus VM223]
 gi|262024828|gb|EEY43496.1| DNA repair protein RecN [Vibrio mimicus VM223]
          Length = 554

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 57/182 (31%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +       L+
Sbjct: 117 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHTDLLKATRHAY-QNWRQASNLL 173

Query: 167 RG 168
           + 
Sbjct: 174 KQ 175


>gi|257418575|ref|ZP_05595569.1| DNA repair protein recN [Enterococcus faecalis T11]
 gi|257160403|gb|EEU90363.1| DNA repair protein recN [Enterococcus faecalis T11]
          Length = 560

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 104/292 (35%), Gaps = 38/292 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N++ ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +
Sbjct: 2   NKM-LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SS 55

Query: 63  DVTRIGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQIND 107
           D  R G+        FS     E  + L ++ I+ E          +   ++V  +    
Sbjct: 56  DYIRQGANKCTLEGLFSMPKSQELKKLLEELGIETEEDSLVIQRDISASGKNVCRVNGRI 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDF 162
           V I  +  + ++L           +      ER       F  + + A+  ++ +   ++
Sbjct: 116 VNITNLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEY 172

Query: 163 ERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             L   +R R +   E             ++A     +     +++   + L       +
Sbjct: 173 RALEAKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIAD 231

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
                  +L G  D   D+   ++ E     L     +DS  +        +
Sbjct: 232 ALTISYAALNGEDDSSLDKIGTSMNE-----LASIESLDSEYKTLSDTVQNA 278


>gi|77919950|ref|YP_357765.1| chromosome segregation SMC protein [Pelobacter carbinolicus DSM
          2380]
 gi|77546033|gb|ABA89595.1| condensin subunit Smc [Pelobacter carbinolicus DSM 2380]
          Length = 1173

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          ++IK + I  F+++   + L F       VG NG GK+N+++AI +    +     R  +
Sbjct: 1  MQIKRIEIVGFKSFVDRVALDFGPGIAAVVGPNGCGKSNVVDAIRWAMGEQSPKNLRGRA 60

Query: 61 YADVTRIGSP 70
            DV   GS 
Sbjct: 61 MEDVIFGGSE 70


>gi|17231480|ref|NP_488028.1| hypothetical protein alr3988 [Nostoc sp. PCC 7120]
 gi|17133123|dbj|BAB75687.1| alr3988 [Nostoc sp. PCC 7120]
          Length = 1008

 Score = 50.3 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 79/243 (32%), Gaps = 47/243 (19%)

Query: 9   FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            L +  F +Y    L F   HT    G NG GK+++LEAI++   G   R A+  DV   
Sbjct: 5   QLVLKNFLSYRDATLDFRGLHTACICGSNGAGKSSLLEAITWALWGES-RAAAEDDVINS 63

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
           G                     ++++     + +  +I    IR        L      P
Sbjct: 64  GEK------------------EVRVDFTFQNNQQKYRIIRSRIRGAS---GVLEFQIETP 102

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
           S  R  +G     R   D ++  I   +   +          +  L +G  D        
Sbjct: 103 SGFRAITG--KGVRATQDLILEHIKLDYDTFIN---------SAYLRQGRADEFML---- 147

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
                   K    R E++  L   + +Y + E               + ++S  ++K + 
Sbjct: 148 --------KRPSERKEILAELLK-LNQYDELEERAKDSSRQFKVRAEELERSLESIKTQL 198

Query: 248 AKK 250
            ++
Sbjct: 199 QQR 201


>gi|326475369|gb|EGD99378.1| SMC protein [Trichophyton tonsurans CBS 112818]
          Length = 1260

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|304312654|ref|YP_003812252.1| Chromosome segregation ATPase [gamma proteobacterium HdN1]
 gi|301798387|emb|CBL46611.1| Chromosome segregation ATPase [gamma proteobacterium HdN1]
          Length = 1166

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 104/311 (33%), Gaps = 52/311 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + I+ F+++     + F    T  VG NG GK+N ++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKIAGFKSFVDPTHITFPDNLTAVVGPNGCGKSNTIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQI-----------NDV 108
            ADV   GS +   +  A VE +   +D S++ E  +   +   ++           N  
Sbjct: 61  MADVIFNGSSTRKPTVQASVELIFDNSDGSLRGEYINYAEISIRRVATRDGQSQYFLNGT 120

Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRFL 144
             R  D                  E     R+    P   RIF   +       ERR+  
Sbjct: 121 KCRRKDITDIFLGTGLGPRSYAIIEQGMISRLIEAKPEDLRIFIEEAAGISKYKERRKET 180

Query: 145 DRMVFAIDPRHRRRMIDFERLM-RGRNRLLTEGYFDSSWCSSIEAQ-MAELGVKINIA-- 200
           +  +      +  R+ D    + R    L  +      +    E + + +  +++     
Sbjct: 181 ESRM-QRTRENLDRLEDIREELGRQLQHLERQAAAAEKYRQYREEERLLKAQLQVMRYQR 239

Query: 201 -------RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
                  R   I  L +     V  +     ++     +  +       ++  Y     +
Sbjct: 240 FHGGISERETAIRDLETRFEARVADQRNADAEIERLRDVHTEISDQLNEVQARYYGLGAE 299

Query: 254 GRKMDSMSRRT 264
             +++     T
Sbjct: 300 IARIEQTLHHT 310


>gi|66803272|ref|XP_635479.1| structural maintenance of chromosome protein [Dictyostelium
           discoideum AX4]
 gi|60463799|gb|EAL61975.1| structural maintenance of chromosome protein [Dictyostelium
           discoideum AX4]
          Length = 1131

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 12/133 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS---FLSPGRGFRRASYAD 63
           I  + ++ F  Y+ +      +  + +G NG GK++I+ AI+      P    R+    D
Sbjct: 70  IVRIKLNNFVTYSDVEFRPGPRLNVIIGPNGSGKSSIVCAIALGLGGGPNLLGRQKQLGD 129

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL--NKHLR 121
             +      +     +    G   I I+ + + + +     IN   I   D +   K L 
Sbjct: 130 FIKNRCSQGY-IEIELHNESGDNYI-IRRDLKKEGNGSEFHINGKSISKNDLITTIKKLN 187

Query: 122 ISW-----LVPSM 129
           +        +P  
Sbjct: 188 VQVDNLCQFLPQD 200


>gi|325957121|ref|YP_004292533.1| DNA repair protein recn [Lactobacillus acidophilus 30SC]
 gi|325333686|gb|ADZ07594.1| DNA repair protein recn [Lactobacillus acidophilus 30SC]
          Length = 560

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 21/130 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG       ++ R
Sbjct: 2   LVELDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRG-----QKEMIR 56

Query: 67  IGSPSFFST-----------FARVEGMEGLADISIKLETRDD---RSVRCLQINDV--VI 110
            G      T            A++    GL     +L    +   +    ++IN     I
Sbjct: 57  SGENKAVITGLFELDEQKEKIAQLCDQYGLPHDDDQLVISRELAVKGRNVVRINGQLTTI 116

Query: 111 RVVDELNKHL 120
            V+ +L  +L
Sbjct: 117 NVLRDLGHYL 126


>gi|294785315|ref|ZP_06750603.1| RecF/RecN/SMC N domain-containing protein [Fusobacterium sp.
           3_1_27]
 gi|294487029|gb|EFG34391.1| RecF/RecN/SMC N domain-containing protein [Fusobacterium sp.
           3_1_27]
          Length = 1183

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           + +K + I+ F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++      
Sbjct: 1   MYLKAVEINGFKSFGDKVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60

Query: 63  --DVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G      +T A V  +   +D  + L+    +  R + I+  
Sbjct: 61  SQDVIFSGGKEKKPATKAEVSLIIDNSDRYLDLDNDSVKITRRIHISGE 109


>gi|296140083|ref|YP_003647326.1| DNA repair protein RecN [Tsukamurella paurometabola DSM 20162]
 gi|296028217|gb|ADG78987.1| DNA repair protein RecN [Tsukamurella paurometabola DSM 20162]
          Length = 590

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 77/242 (31%), Gaps = 42/242 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----F 56
           M   I+I  L +            F    T+  G+ G GKT ++ ++  L+  R      
Sbjct: 1   MLEEIRIDSLGV-----IEQAAAEFAEGLTVLTGETGAGKTMVVTSLHLLAGARADPGRI 55

Query: 57  RRASYADVT--RI---GSPSFFSTFARVEGMEGLAD----ISIKLETRDDRSVRCLQIND 107
           R  +   V   R    G+ S       V+G  G  D    I+++    D RS   L    
Sbjct: 56  RAGADKAVVEGRFSLAGASSADQVREVVDGAGGDLDDDAVIAVRSVAADGRSRAYLGGRS 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           V +  + E    L          R+       +R  LD    A  P   + +  ++ +  
Sbjct: 116 VPVGTLGEFAGPLLTVHGQNDQLRLLR--PERQRDLLDAFAGA--PA-LKALATYQAV-- 168

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA--LSSLIMEYVQKENFPHIK 225
                               A  AEL  +   +R  ++    L+S + E    E  P   
Sbjct: 169 ---------------RDEWLAARAELADRTTRSRELVLEQDHLTSALAEIDGLEPLPGED 213

Query: 226 LS 227
           + 
Sbjct: 214 VE 215


>gi|221200969|ref|ZP_03574009.1| DNA repair protein RecN [Burkholderia multivorans CGD2M]
 gi|221206579|ref|ZP_03579592.1| DNA repair protein RecN [Burkholderia multivorans CGD2]
 gi|221173888|gb|EEE06322.1| DNA repair protein RecN [Burkholderia multivorans CGD2]
 gi|221178819|gb|EEE11226.1| DNA repair protein RecN [Burkholderia multivorans CGD2M]
          Length = 549

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 91/251 (36%), Gaps = 30/251 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FDA  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDAGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++     A+ ++ L    D + R    IN     +  + 
Sbjct: 57  TGCSRADITAEFTPHDRVARWLDEHAFDAEDTVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 ELGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAE--AANVARAWRVWRDATQAID 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+ ++ +  H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQPGEW-EEVSAEHKRLSHSANLIE 223

Query: 235 KFDQSFCALKE 245
               +  AL E
Sbjct: 224 GVRGALDALSE 234


>gi|206900665|ref|YP_002251333.1| DNA double-strand break repair Rad50 ATPase, putative [Dictyoglomus
           thermophilum H-6-12]
 gi|206739768|gb|ACI18826.1| DNA double-strand break repair Rad50 ATPase, putative [Dictyoglomus
           thermophilum H-6-12]
          Length = 983

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           K+  L +  F+ Y +  + F  +  I + G N  GK+ I EAI F   G+     + +++
Sbjct: 3   KLVSLTLRNFKQYRTAHINFPEKGKILIKGKNEAGKSTIFEAIGFALFGKPVYVGTISNL 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
            +  +         V+  + +  IS  L+     S 
Sbjct: 63  IKFNTEKA-EIELVVKTEDKILTISRTLKKNPQGST 97



 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 73/233 (31%), Gaps = 20/233 (8%)

Query: 157 RRMIDFERLM---RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI-NALSSLI 212
               D+  +    + +  LL++           EA + E   K    R ++I   +    
Sbjct: 746 ENWKDYASISIDPKEKEMLLSQKEELIKTLGEKEAILEEYESKTGQKRDDLIPEKVEEDY 805

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
            E  +K       + +         +S       + +++      D      +   ++  
Sbjct: 806 KEIERKIQKMDYAIKIAESTRESILKSILPRTMAFMQRILPILTSDRYHYAEIDEDYKLR 865

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL-ISNTTGFAP-ILLLDEISAHLDEDK 330
           +        +     S G Q  + + + LA A   +    G  P  + LDE     DED+
Sbjct: 866 VYTSDTKDPLGKERFSGGTQDQISLALRLAFAMATLPQDKGVQPKFIFLDEPLGSFDEDR 925

Query: 331 RNALF-----RIVTDIGSQIFMTG---TDKSVFDSLNETAKFMRISNHQALCI 375
              L        V++   QIF+      D+ +FD          I N Q   I
Sbjct: 926 AKGLLYLITQGEVSEFFDQIFVVTHVPIDEDLFDE------VYYIDNGQITKI 972


>gi|315051004|ref|XP_003174876.1| chromosome segregation protein sudA [Arthroderma gypseum CBS
          118893]
 gi|311340191|gb|EFQ99393.1| chromosome segregation protein sudA [Arthroderma gypseum CBS
          118893]
          Length = 1199

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MFIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 17/193 (8%)

Query: 161  DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
             +    + R  L        +   SI+  +  L  + + A       +S           
Sbjct: 979  QYNSFTKQRETLTKRREELDASHKSIDELIMILDQRKDEAIERTFKQVSREFARI----- 1033

Query: 221  FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
            F  +  +  G L  +        ++E      +  +  S+     +G   S       D 
Sbjct: 1034 FEKLAPAGRGRLIIQRKTDAATRQQEDMDSDEEEARR-SVENYIGVGISVS--FNSKHDD 1090

Query: 281  AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT- 339
               I   S G++ +  + +  A           AP  L DEI A+LD   R A+ +++  
Sbjct: 1091 QQRIQQLSGGQKSLCALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQMLQS 1145

Query: 340  ---DIGSQIFMTG 349
               +   Q   T 
Sbjct: 1146 ISEETNGQFICTT 1158


>gi|258620034|ref|ZP_05715074.1| DNA repair protein RecN [Vibrio mimicus VM573]
 gi|258587767|gb|EEW12476.1| DNA repair protein RecN [Vibrio mimicus VM573]
          Length = 554

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 57/182 (31%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +       L+
Sbjct: 117 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHTDLLKATRHAY-QNWRQASNLL 173

Query: 167 RG 168
           + 
Sbjct: 174 KQ 175


>gi|256846286|ref|ZP_05551743.1| ATP binding protein [Fusobacterium sp. 3_1_36A2]
 gi|294784630|ref|ZP_06749919.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
 gi|256718055|gb|EEU31611.1| ATP binding protein [Fusobacterium sp. 3_1_36A2]
 gi|294487846|gb|EFG35205.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
          Length = 352

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/355 (14%), Positives = 107/355 (30%), Gaps = 52/355 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + I  +R   +L++    ++  FVGDNG  KT ILE++    P              
Sbjct: 2   LKSIEIKNYRGIKNLKIDNFKKYNFFVGDNGSCKTTILESLFSAFP-------------- 47

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             SP    T A   G++   D         D   +   I      + DE+   +     +
Sbjct: 48  -NSPEGIITAANSRGLQVNLDNKYNFFFNADEENKIEFI------LNDEIVTKINTKNFI 100

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
                  +  S+     L  ++    P+               N L  + + +  +    
Sbjct: 101 EKNSLDLTNTSVSIEAKLSSLMS---PKFLY------------NSL--KSHGEKVFLDV- 142

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
              M +    I     ++ N L +   +      F    +   G       +     K+ 
Sbjct: 143 -DIMIDNIFNITTNIKDINNNLLNKYSKIYGSSYFISPSIKYKGNASLVIKELIKNKKKN 201

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH--GSTGEQKVVLVGIFLAHA 304
               + +  + D          +     V    K +       S G     ++ I     
Sbjct: 202 ELIDILNLFEKDIDD------INLDGSQVLLSKKGVKKLLPISSFGGGLSSILDIV---T 252

Query: 305 RLISNTTGFAPILLLDEISAHLDEDK-RNALFRIVTDIGSQIFMTGTDKSVFDSL 358
            L  +      I  ++    +L+  K   +L ++  +   Q+F+T   K + +  
Sbjct: 253 YLFDDEIKTLFIDEIETGIHYLNYQKFCESLIKVSKEKDIQLFITTHSKEILEEF 307


>gi|209877212|ref|XP_002140048.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209555654|gb|EEA05699.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 1289

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/62 (17%), Positives = 22/62 (35%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
          KI+ + +     +  L +       I  G NG GK++ +  I+ L      +      + 
Sbjct: 15 KIRRVVLHNIGGHELLDIELSNSLNIITGGNGSGKSSFVSGIALLCGWSSKKAGKDISLI 74

Query: 66 RI 67
            
Sbjct: 75 NY 76


>gi|169857604|ref|XP_001835450.1| hypothetical protein CC1G_05412 [Coprinopsis cinerea okayama7#130]
 gi|116503523|gb|EAU86418.1| hypothetical protein CC1G_05412 [Coprinopsis cinerea okayama7#130]
          Length = 1149

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 13/127 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +++ +F  +  L   F  Q    +G NG GK+ +L A+     G+     R      
Sbjct: 110 IEAVHMVDFMCHEKLSFEFGPQINFIIGHNGSGKSAVLTALVIALGGKTAATGRGTGLKT 169

Query: 64  VTRIGSPSFFSTF--------ARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVV 113
             R G P    T         A      G + I  +  T+D  +   +      +     
Sbjct: 170 FIREGRPWAEVTVKIKNQGSDAYKHDQYGNSIIITRRFTKDGSATWKIMSEHGKVISNKK 229

Query: 114 DELNKHL 120
           DEL+K  
Sbjct: 230 DELSKIC 236


>gi|66809611|ref|XP_638528.1| structural maintenance of chromosome protein [Dictyostelium
           discoideum AX4]
 gi|74996882|sp|Q54PK4|SMC2_DICDI RecName: Full=Structural maintenance of chromosomes protein 2
 gi|60467140|gb|EAL65176.1| structural maintenance of chromosome protein [Dictyostelium
           discoideum AX4]
          Length = 1184

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + I+ + I  F++YA+  +   FD       G NG GK+NIL++I F   +S     R  
Sbjct: 1   MYIEDIIIDGFKSYANRTVIEGFDPTFNAITGLNGSGKSNILDSICFVLGISNLSQVRVD 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           S  ++  + G          +            G E L  I++  +       + L IN 
Sbjct: 61  SLQELVYKKGQAGITKASVTITFNNSDKKQSPAGYEHLDKITVTRQVAIGGRNKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              ++    +    +   V +   +    
Sbjct: 120 HNAQLSRVQDLFHSVQLNVNNPHFLIMQG 148


>gi|67903510|ref|XP_682011.1| hypothetical protein AN8742.2 [Aspergillus nidulans FGSC A4]
 gi|40741345|gb|EAA60535.1| hypothetical protein AN8742.2 [Aspergillus nidulans FGSC A4]
          Length = 1232

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 60/209 (28%), Gaps = 9/209 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + + +F  Y +       +  + +G NG GK+ ++ AI   L  G     R     
Sbjct: 118 AIVRIKVKDFVTYTAAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPVHLGRAKDIG 177

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           +  + G            G +   +  +    + + +     +N           +   +
Sbjct: 178 EFVKHGCREATIEIELARGPKHSRNPVVTRIIKREGNKSSFMLNG----KQSFAIQVDNL 233

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
              +P                      A          + +RL   + +L +    D   
Sbjct: 234 CQFLPQDKVSEFAALTPVELLHSTQRAAAGAEMVELHENLKRLRAEQKKLQSNNQSDKDL 293

Query: 183 CSSIE--AQMAELGVKINIARVEMINALS 209
            +++E   +M     +    R ++   + 
Sbjct: 294 LANLENRQEMQRADFERVRQRAQIARRIE 322


>gi|326469805|gb|EGD93814.1| chromosome segregation protein [Trichophyton tonsurans CBS
          112818]
          Length = 1199

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MFIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 90/293 (30%), Gaps = 22/293 (7%)

Query: 66   RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            +  + +      R +    L + +  +E    R  + +Q    +     E + ++R   +
Sbjct: 879  QQNNEALQLEQRRADIKRELEEFAKSIEKHQRRMEKSMQKKAALTAQALECSANIRDLGV 938

Query: 126  VPSM-DRIFSGLSME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +P      F          R    +  +      +++    +    + R  L        
Sbjct: 939  LPDEAFTKFKNTDSNTIVKRLHKANEALKKYSHVNKKAFEQYNSFTKQRETLTKRREELD 998

Query: 181  SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   SI+  +  L  + + A       +S           F  +  +  G L  +     
Sbjct: 999  ASHKSIDELIMILDQRKDEAIERTFKQVSREFARI-----FEKLAPAGRGRLIIQRKTDA 1053

Query: 241  CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               ++E      +  +  S+     +G   S       D    I   S G++ +  + + 
Sbjct: 1054 ATRQQEDMDSDEEEARR-SVENYIGVGISVS--FNSKHDDQQRIQQLSGGQKSLCALALV 1110

Query: 301  LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
             A           AP  L DEI A+LD   R A+ +++     +   Q   T 
Sbjct: 1111 FA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQMLQSISEETNGQFICTT 1158


>gi|326431243|gb|EGD76813.1| hypothetical protein PTSG_08161 [Salpingoeca sp. ATCC 50818]
          Length = 950

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 6/107 (5%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
            I  + +  F  Y  +         + +G NG GK++I+ A++    G+     R    A
Sbjct: 56  AIVRMKLENFVTYNHVEFRPGPSLNVVIGPNGTGKSSIVCAMALALAGKPSVLGRETKAA 115

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
              R G+ S       VE  +      +        +     IN   
Sbjct: 116 AFIRTGANSA---TIEVELFQSSGQNMVVRRVIKKGNQNAFYINGKP 159


>gi|116491231|ref|YP_810775.1| DNA repair ATPase [Oenococcus oeni PSU-1]
 gi|290890774|ref|ZP_06553841.1| hypothetical protein AWRIB429_1231 [Oenococcus oeni AWRIB429]
 gi|116091956|gb|ABJ57110.1| DNA replication and repair protein RecN [Oenococcus oeni PSU-1]
 gi|290479546|gb|EFD88203.1| hypothetical protein AWRIB429_1231 [Oenococcus oeni AWRIB429]
          Length = 551

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 12/118 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F      ++ FD   T+  G+ G GK+ I++A+S L   R      Y+ + R
Sbjct: 2   LNNLSIKNFAIINDAQIDFDKGLTVMTGETGAGKSIIIDALSLLVGERS-----YSSMIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G        A ++G+      S  LE       R L I   + R    L     I  
Sbjct: 57  KGEKK-----AVIQGVFDYPKKS--LEDFGIEKDRQLVIRREINRTGRNLISANGIIL 107


>gi|241958308|ref|XP_002421873.1| structural maintenance of chromosomes protein, putative [Candida
           dubliniensis CD36]
 gi|223645218|emb|CAX39817.1| structural maintenance of chromosomes protein, putative [Candida
           dubliniensis CD36]
          Length = 1073

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 3/120 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF-RRASYADV 64
           I+ + +  F  Y+       +   + +G NG GK+ ++ +I   L+      +R +   +
Sbjct: 26  IRKVRVWNFTTYSYTEFNLSSTLNMIIGPNGSGKSTLVASICIGLAGSINLIKRKNLKSM 85

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            + G     S    +E  EG + + +K E     S   +         V ++     I  
Sbjct: 86  IKTGQEK-SSVEITIENYEGQSPLVVKREFTAKESNWTVNNKRSTEAKVKDIRAKFNIQL 144


>gi|238497153|ref|XP_002379812.1| chromosome segregation protein SudA, putative [Aspergillus flavus
          NRRL3357]
 gi|220694692|gb|EED51036.1| chromosome segregation protein SudA, putative [Aspergillus flavus
          NRRL3357]
          Length = 1199

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + +K + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 92/280 (32%), Gaps = 24/280 (8%)

Query: 80   EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD-----RIFS 134
            E    L +++  +E    R  + +Q    + +   E   ++R   ++P         + S
Sbjct: 893  ETRRELDELAKSIEKHQRRMEKSMQKKAALTKQAAECAANIRDLGVLPDEAFTKYKNMDS 952

Query: 135  GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
               +++   ++  +      +++    +    + R  L        +   SI+  +  L 
Sbjct: 953  NAVVKKLHKVNEGLKKYSHVNKKAFEQYNSFTKQRETLTNRREELDASQKSIDDLINVLD 1012

Query: 195  VKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
             + + A       +S       +K       +L +    D    Q+     E+       
Sbjct: 1013 QRKDEAIERTFKQVSREFHNVFEKLVPAGRGRLIIQRKTDRAMRQADELDSED------- 1065

Query: 254  GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
                +S+     +G   S       D+   I   S G++ +  + +  A           
Sbjct: 1066 EEARNSVENYVGVGISVS--FNSKHDEQQRIQQLSGGQKSLCALALVFA-----IQACDP 1118

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTG 349
            AP  L DEI A+LD   R A+ +++  I      Q   T 
Sbjct: 1119 APFYLFDEIDANLDAQYRTAVAQMLQSISDATNGQFICTT 1158


>gi|197118821|ref|YP_002139248.1| DNA repair ATPase RecN [Geobacter bemidjiensis Bem]
 gi|197088181|gb|ACH39452.1| DNA repair ATPase RecN [Geobacter bemidjiensis Bem]
          Length = 553

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 69/204 (33%), Gaps = 23/204 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I+       L + F     I  G+ G GK+ I++A++ +  GR     + +D+ R
Sbjct: 2   LRELQITNLAIIEKLHVEFAPGLNILTGETGAGKSIIIDAVNLILGGR-----ASSDLIR 56

Query: 67  IGS-----PSFFSTFAR--------VEGMEGLADISIKLETRDDRSVRCLQINDVVIRV- 112
            G+      + F    R          G++   ++ ++   +     R      +     
Sbjct: 57  SGAREASVEAVFDLAGREALLATLSDAGIDCDGELLVRRVVQQGGKNRVFIGGGLATTSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR--HRRRMIDFERLMRGRN 170
           + +L ++L   +       +    +    R LD    ++  R     R   ++       
Sbjct: 117 LSDLCRNLINIYGQHDAQTLLK--TENHLRLLDGFAGSLSLREEFASRFEAYQAAKNELA 174

Query: 171 RLLTEGYFDSSWCSSIEAQMAELG 194
            L             +  Q AE+G
Sbjct: 175 ALEEGEREAERRLDLLTFQSAEIG 198


>gi|169774329|ref|XP_001821632.1| chromosome segregation protein sudA [Aspergillus oryzae RIB40]
 gi|83769495|dbj|BAE59630.1| unnamed protein product [Aspergillus oryzae]
          Length = 1199

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + +K + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MYVKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 92/280 (32%), Gaps = 24/280 (8%)

Query: 80   EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD-----RIFS 134
            E    L +++  +E    R  + +Q    + +   E   ++R   ++P         + S
Sbjct: 893  ETRRELDELAKSIEKHQRRMEKSMQKKAALTKQAAECAANIRDLGVLPDEAFTKYKNMDS 952

Query: 135  GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
               +++   ++  +      +++    +    + R  L        +   SI+  +  L 
Sbjct: 953  NAVVKKLHKVNEGLKKYSHVNKKAFEQYNSFTKQRETLTNRREELDASQKSIDDLINVLD 1012

Query: 195  VKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
             + + A       +S       +K       +L +    D    Q+     E+       
Sbjct: 1013 QRKDEAIERTFKQVSREFHNVFEKLVPAGRGRLIIQRKTDRAMRQADELDSED------- 1065

Query: 254  GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
                +S+     +G   S       D+   I   S G++ +  + +  A           
Sbjct: 1066 EEARNSVENYVGVGISVS--FNSKHDEQQRIQQLSGGQKSLCALALVFA-----IQACDP 1118

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTG 349
            AP  L DEI A+LD   R A+ +++  I      Q   T 
Sbjct: 1119 APFYLFDEIDANLDAQYRTAVAQMLQSISDATNGQFICTT 1158


>gi|163802498|ref|ZP_02196391.1| recombination and repair protein [Vibrio sp. AND4]
 gi|159173799|gb|EDP58614.1| recombination and repair protein [Vibrio sp. AND4]
          Length = 554

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 83/272 (30%), Gaps = 34/272 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELLKGMTTITGETGAGKSIAIDALGLCLGGR-----ADAGMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  + L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFLLDNNLHATRWLEDNDLLDGSECILRRTITKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+    ++         +     +  ++
Sbjct: 117 LKSLGQRLINIHGQHAHHQLMK--SEHQMAMLDQYAGHLNLLKSTRSTYQHWRQADNNLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG--------VKINIARVEMINALSSLIMEYVQKE 219
              +   +             ++ EL         ++    R+     L++   + ++  
Sbjct: 175 QLKKNSHQNQAQKQLLEYQIKELNELSLGEEEFAELEQEHKRLSNSGELAATCQQAIELI 234

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
                  +L+         S  A  ++   +L
Sbjct: 235 YEGEEVNALSILQSANHALSELAELDDKLAEL 266


>gi|118465536|ref|YP_880670.1| hypothetical protein MAV_1428 [Mycobacterium avium 104]
 gi|118166823|gb|ABK67720.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 876

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L   +
Sbjct: 1  MKLHRLTLTNYRGIAHREIEFPDHGVVVVCGANEIGKSSMIEALDLLLEAK 51


>gi|115730842|ref|XP_786064.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115959643|ref|XP_001177541.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 1247

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
          +K L +  F++Y     +         +G NG GK+N+++AISF+   +    R    ++
Sbjct: 4  LKLLMLDNFKSYQGKQTIGPFKPFAAIIGPNGAGKSNLMDAISFVLGEKTSNLRVKRLSE 63

Query: 64 VTRIGSP 70
          +   G+P
Sbjct: 64 LI-HGAP 69


>gi|225852903|ref|YP_002733136.1| DNA repair protein RecN [Brucella melitensis ATCC 23457]
 gi|256263615|ref|ZP_05466147.1| DNA repair protein RecN [Brucella melitensis bv. 2 str. 63/9]
 gi|225641268|gb|ACO01182.1| DNA repair protein RecN [Brucella melitensis ATCC 23457]
 gi|263093667|gb|EEZ17672.1| DNA repair protein RecN [Brucella melitensis bv. 2 str. 63/9]
 gi|326409445|gb|ADZ66510.1| DNA repair protein RecN [Brucella melitensis M28]
 gi|326539151|gb|ADZ87366.1| DNA repair protein RecN [Brucella melitensis M5-90]
          Length = 559

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L + F +  ++  G+ G GK+ +L+++S     RG      A + R
Sbjct: 2   LSHLSIRDIVLIERLDIEFRSGLSVLTGETGAGKSILLDSLSLALGARG-----DASLVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRV 112
            G+                   F R  G +   DI ++     D   R    +    + +
Sbjct: 57  HGADQGQVTAVFDVPGNHPARLFLRENGFDDDGDIILRRLQMGDGRTRVFINDQAASVAL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMR 167
           + +L K L           +    +   R  LD          +     +   D E  + 
Sbjct: 117 LRDLGKRLVEIHGQHDDRALI--DTDLHRTLLDAFGGLDAQAMLVRERHKAWRDAESALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
                + +   +  +  S   ++ +L
Sbjct: 175 KHRARVEQAEREGDYLRSSVEELTKL 200


>gi|17986871|ref|NP_539505.1| DNA repair protein RECN [Brucella melitensis bv. 1 str. 16M]
 gi|256045052|ref|ZP_05447953.1| DNA repair protein RECN [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113975|ref|ZP_05454758.1| DNA repair protein RECN [Brucella melitensis bv. 3 str. Ether]
 gi|260565349|ref|ZP_05835833.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv.
           1 str. 16M]
 gi|265991478|ref|ZP_06104035.1| DNA repair protein RecN [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995316|ref|ZP_06107873.1| DNA repair protein RecN [Brucella melitensis bv. 3 str. Ether]
 gi|17982510|gb|AAL51769.1| DNA repair protein recn [Brucella melitensis bv. 1 str. 16M]
 gi|260151417|gb|EEW86511.1| ATP/GTP-binding site-containing protein A [Brucella melitensis bv.
           1 str. 16M]
 gi|262766429|gb|EEZ12218.1| DNA repair protein RecN [Brucella melitensis bv. 3 str. Ether]
 gi|263002262|gb|EEZ14837.1| DNA repair protein RecN [Brucella melitensis bv. 1 str. Rev.1]
          Length = 559

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L + F +  ++  G+ G GK+ +L+++S     RG      A + R
Sbjct: 2   LSHLSIRDIVLIERLDIEFRSGLSVLTGETGAGKSILLDSLSLALGARG-----DASLVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRV 112
            G+                   F R  G +   DI ++     D   R    +    + +
Sbjct: 57  HGADQGQVTAVFDVPGNHPARLFLRENGFDDDGDIILRRLQMGDGRTRVFINDQAASVAL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMR 167
           + +L K L           +    +   R  LD          +     +   D E  + 
Sbjct: 117 LRDLGKRLVEIHGQHDDRALI--DTDLHRTLLDAFGGLDAQAMLVRERHKAWRDAESALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
                + +   +  +  S   ++ +L
Sbjct: 175 KHRARVEQAEREGDYLRSSVEELTKL 200


>gi|17228623|ref|NP_485171.1| chromosome segregation protein [Nostoc sp. PCC 7120]
 gi|17130474|dbj|BAB73085.1| chromosome segregation protein [Nostoc sp. PCC 7120]
          Length = 1208

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + IK + ++ F+++  +  +   +  T+  G NG GK+NIL+A+ F   L+  +G R   
Sbjct: 2  VHIKRVELTNFKSFGGTTSVPLLSGFTVVSGPNGSGKSNILDALLFCLGLASSKGMRADR 61

Query: 61 YADVTR 66
            D+  
Sbjct: 62 LPDLVN 67


>gi|218752980|ref|ZP_03531776.1| hypothetical protein MtubG1_05830 [Mycobacterium tuberculosis GM
          1503]
 gi|289761430|ref|ZP_06520808.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
          1503]
 gi|289708936|gb|EFD72952.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
          1503]
          Length = 214

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L
Sbjct: 1  MKLHRLALTNYRGIAHRDVEFPDHGVVVVCGANEIGKSSMVEALDLL 47


>gi|71023505|ref|XP_761982.1| hypothetical protein UM05835.1 [Ustilago maydis 521]
 gi|46101547|gb|EAK86780.1| hypothetical protein UM05835.1 [Ustilago maydis 521]
          Length = 1223

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 5  IKIKFLNISEFRNYA-SLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          ++I+ L I  F++Y     +  FDA      G NG GK+NIL++I F   ++     R  
Sbjct: 1  MRIEELIIDGFKSYPVRTHVSGFDASFNAITGLNGSGKSNILDSICFVLGITNLTAVRAN 60

Query: 60 SYADVT-RIGSPSFFSTFARV 79
          +  D+  + G          +
Sbjct: 61 NLQDLIYKRGQAGITKASVTI 81


>gi|327194612|gb|EGE61462.1| DNA repair protein [Rhizobium etli CNPAF512]
          Length = 557

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 99/299 (33%), Gaps = 43/299 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F+   ++  G+ G GK+ +L+++S    GRG        + R
Sbjct: 2   LIQLSIRDIVLIERLDLAFETGLSVLTGETGAGKSILLDSLSLALGGRG-----DGGLVR 56

Query: 67  IGS-------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G                      R  G++   D+  + +   D   +    +  V   +
Sbjct: 57  HGEDKGQVTAVFDVGTDHGARALLRENGIDDEGDLIFRRQQSADGRTKAYVNDQPVSVQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRG 168
                 + +       DR     +   R  LD      D      R  R   D ER ++ 
Sbjct: 117 MRQAGQMLVEIHGQHDDRALV-DTNAHRTLLDAFAGLTDEVSEVARLYRLWRDSERTLKK 175

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMI--NALSSLIMEYVQ--- 217
               +     ++ +  S   ++ +L        ++  +R +M+    ++  I E  +   
Sbjct: 176 HREKVESAAREADYLRSSVDELQKLSPQDGEEEELAESRQKMMKAERIAGDIAEASEFLN 235

Query: 218 --KENFPHI-----KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR-KMDSMSRRTLIGP 268
                 PHI     +L           +    L +    +L + + ++++  R+T   P
Sbjct: 236 GNASPVPHIASLVRRLERKSHEAPGLLEDTVTLLDAALDQLSNAQMEVEAALRKTEYDP 294


>gi|326565176|gb|EGE15367.1| DNA repair protein RecN [Moraxella catarrhalis 103P14B1]
 gi|326574627|gb|EGE24563.1| DNA repair protein RecN [Moraxella catarrhalis 101P30B1]
          Length = 568

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 67/231 (29%), Gaps = 23/231 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L            + FD +  +  G+ G GK+ IL+A+S     R     + + + R
Sbjct: 2   LISLTFENLALIEQKHIDFDDRFNVITGETGAGKSLILDALSLCVGER-----ADSSMVR 56

Query: 67  IGSPSF-----------FSTFARVEGMEGL-ADISIKLETRDDRSVR-CLQINDVVIRVV 113
            G                   A  E  +    D ++ +  +     R    IN V   + 
Sbjct: 57  HGCDEASVFGEFDISGNAQVIAWFEQHDRKLEDETLLIRRKISNQGRSKSWINGVPASIS 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           +  +    +  +      +          +LDR+               +        L 
Sbjct: 117 ELKSLGSMLVNIHSQHAGLELLKPQFIVDWLDRIG-----GFGDLKAAAKTAFHHYQTLK 171

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +     S  +    +MA L  K+      ++     +  EY +  N   +
Sbjct: 172 RQADDARSQSAQRADRMALLSAKLTDIEPLLLVDFQEIEAEYDELSNLESL 222


>gi|327303830|ref|XP_003236607.1| chromosome segregation protein [Trichophyton rubrum CBS 118892]
 gi|326461949|gb|EGD87402.1| chromosome segregation protein [Trichophyton rubrum CBS 118892]
          Length = 1199

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MFIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 90/293 (30%), Gaps = 22/293 (7%)

Query: 66   RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            +  + +      R +    L + +  +E    R  + +Q    +     E + ++R   +
Sbjct: 879  QQNNEALQLEQRRADIKRELEEFAKSIEKHQRRMEKSMQKKAALTAQALECSANIRDLGV 938

Query: 126  VPSM-DRIFSGLSME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +P      F          R    +  +      +++    +    + R  L        
Sbjct: 939  LPDEAFTKFKNTDSNTIVKRLHKANEALKKYSHVNKKAFEQYNSFTKQRETLTKRREELD 998

Query: 181  SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   SI+  +  L  + + A       +S           F  +  +  G L  +     
Sbjct: 999  ASHKSIDELIMILDQRKDEAIERTFKQVSREFARI-----FEKLAPAGRGRLIIQRKTDA 1053

Query: 241  CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               ++E      +  +  S+     +G   S       D    I   S G++ +  + + 
Sbjct: 1054 ATRQQEDMDSDEEEARR-SVENYIGVGISVS--FNSKHDDQQRIQQLSGGQKSLCALALV 1110

Query: 301  LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
             A           AP  L DEI A+LD   R A+ +++     +   Q   T 
Sbjct: 1111 FA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQMLQSISEETNGQFICTT 1158


>gi|316979644|gb|EFV62407.1| putative RecF/RecN/SMC N domain protein [Trichinella spiralis]
          Length = 1055

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RR 58
            R+ IK + I  F++YA   +   F    T  VG NG GK+N+++++ F+   R    R 
Sbjct: 73  PRLMIKEIWIENFKSYAGRHVIGPFHKSFTAIVGPNGSGKSNVIDSLLFVFGYRAQRIRS 132

Query: 59  ASYADVTRIGSPSFFSTFARVE 80
              + +    +      F +VE
Sbjct: 133 KKISVLIHNTAEHGHMRFCKVE 154


>gi|309362928|emb|CAR99125.1| hypothetical protein CBG_28106 [Caenorhabditis briggsae AF16]
          Length = 277

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 16/115 (13%)

Query: 1   MTNRIKIKFLNISEF-RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           M N ++I  +    F R    L + F     +  GDNG GKT +++A++F +        
Sbjct: 1   MANTVRISSIRTENFPRGNRPLNVGFGTNFAVVRGDNGSGKTTLIKAVAFAAL------- 53

Query: 60  SYADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              D+  IG   S  +   R  G      +    +    RS+    IND  ++  
Sbjct: 54  -DKDLPIIGLENSTVAVSFRKNG------VETTFKRTTKRSISRFSINDGRVQKR 101


>gi|302508948|ref|XP_003016434.1| hypothetical protein ARB_04723 [Arthroderma benhamiae CBS 112371]
 gi|291180004|gb|EFE35789.1| hypothetical protein ARB_04723 [Arthroderma benhamiae CBS 112371]
          Length = 1199

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MFIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 17/193 (8%)

Query: 161  DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
             +    + R  L        +   SI+  +  L  + + A       +S           
Sbjct: 979  QYNSFTKQRETLTKRREELDASHKSIDELIMILDQRKDEAIERTFKQVSREFARI----- 1033

Query: 221  FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
            F  +  +  G L  +        ++E      +  +  S+     +G   S       D 
Sbjct: 1034 FEKLAPAGRGRLIIQRKTDAATRQQEDMDSDEEEARR-SVENYIGVGISVS--FNSKHDD 1090

Query: 281  AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT- 339
               I   S G++ +  + +  A           AP  L DEI A+LD   R A+ +++  
Sbjct: 1091 QQRIQQLSGGQKSLCALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQMLQS 1145

Query: 340  ---DIGSQIFMTG 349
               +   Q   T 
Sbjct: 1146 ISEETNGQFICTT 1158


>gi|259483061|tpe|CBF78122.1| TPA: structural maintenance of chromosome complex subunit SmcA
           (AFU_orthologue; AFUA_6G02700) [Aspergillus nidulans
           FGSC A4]
          Length = 1185

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 60/209 (28%), Gaps = 9/209 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + + +F  Y +       +  + +G NG GK+ ++ AI   L  G     R     
Sbjct: 118 AIVRIKVKDFVTYTAAEFFPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPVHLGRAKDIG 177

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           +  + G            G +   +  +    + + +     +N           +   +
Sbjct: 178 EFVKHGCREATIEIELARGPKHSRNPVVTRIIKREGNKSSFMLNG----KQSFAIQVDNL 233

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
              +P                      A          + +RL   + +L +    D   
Sbjct: 234 CQFLPQDKVSEFAALTPVELLHSTQRAAAGAEMVELHENLKRLRAEQKKLQSNNQSDKDL 293

Query: 183 CSSIE--AQMAELGVKINIARVEMINALS 209
            +++E   +M     +    R ++   + 
Sbjct: 294 LANLENRQEMQRADFERVRQRAQIARRIE 322


>gi|215426595|ref|ZP_03424514.1| hypothetical protein MtubT9_09472 [Mycobacterium tuberculosis
          T92]
          Length = 188

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L
Sbjct: 1  MKLHRLALTNYRGIAHRDVEFPDHGVVVVCGANEIGKSSMVEALDLL 47


>gi|118586762|ref|ZP_01544199.1| DNA repair protein RecN [Oenococcus oeni ATCC BAA-1163]
 gi|118432850|gb|EAV39579.1| DNA repair protein RecN [Oenococcus oeni ATCC BAA-1163]
          Length = 551

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 70/192 (36%), Gaps = 19/192 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F      ++ FD   T+  G+ G GK+ I++A+S L   R      Y+ + R
Sbjct: 2   LNNLSIKNFAIINDAQIDFDKGLTVMTGETGAGKSIIIDALSLLVGERS-----YSSMIR 56

Query: 67  IGSPSFFSTFA------RVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVDELN 117
            G                +E      D  + +    +R+ R  +  N +   ++ + ++ 
Sbjct: 57  KGEKKAVIQGVFDYPKKSLEDFGIEKDRQLVIRREINRTGRNLISANGIILTLKQLTQIG 116

Query: 118 KHLRISWLVPSMDRIFSG--LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
             L           +      +     F +R    +   ++ +  D+ RL   +N L+ +
Sbjct: 117 SRLVKISAQFDNQELLDNHLQAGLVDSFANRDFQDLLDDYQSKFDDYSRL---KNILIKK 173

Query: 176 GYFDSSWCSSIE 187
              +    S ++
Sbjct: 174 QKDEKDRQSRLD 185


>gi|111225155|ref|YP_715949.1| chromosome partition protein smc [Frankia alni ACN14a]
 gi|111152687|emb|CAJ64428.1| Chromosome partition protein smc [Frankia alni ACN14a]
          Length = 1249

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 70/191 (36%), Gaps = 25/191 (13%)

Query: 33  VGDNGVGKTNILEAISFLS---PGRGFRRASYADVTRIGSPS-----FFSTFARVEGMEG 84
           +G NG GK+N+++AI+++      +  R  + +DV   G+P+            ++  +G
Sbjct: 1   MGPNGSGKSNVVDAIAWVLGEQGAKALRGGTMSDVIFAGTPARPALGRAEVLLTIDNSDG 60

Query: 85  LADISIKLETRDDRSVRC----LQINDVVIRVVDE--------LNKHLRISWLVPSMDRI 132
              I     T      R       IN    R++D         + + L +      +D +
Sbjct: 61  ALPIEYTEVTVGRLMFRSGESEYTINGTGCRLLDIQELMSDSGIGRELHVIVGQGQLDAV 120

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
                 +RR F++     +  R        E+ +R    +       +   + +  Q+  
Sbjct: 121 LHARPEDRRAFIEEAAGVLKHR-----KRKEKALRKLEAMAANLTRLTDLSAELRRQLGP 175

Query: 193 LGVKINIARVE 203
           LG +  IAR  
Sbjct: 176 LGRQAEIARKA 186


>gi|90021524|ref|YP_527351.1| condensin subunit Smc [Saccharophagus degradans 2-40]
 gi|89951124|gb|ABD81139.1| condensin subunit Smc [Saccharophagus degradans 2-40]
          Length = 1168

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVNFPSNLCSVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGME-GLADISIKLETRDDRSVRCLQIND 107
             DV   GS              F ++ A + G   G  +ISIK +   +       +N 
Sbjct: 61  MTDVIFNGSGGRKPVGQASIELIFDNSDATITGEYAGFNEISIKRKVTREAQN-FYYLNG 119

Query: 108 VVIRVVD 114
              R  D
Sbjct: 120 SKCRRRD 126



 Score = 36.4 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 7/152 (4%)

Query: 196  KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK--FDQSFCALKEEYAKKLFD 253
            KI   R   +++ +  + E ++       K+        K  FDQ    L+E + K    
Sbjct: 977  KIESERKLYLDSQNEDLREALETLENAIKKIDRETRTRFKETFDQVNSGLQELFPKVFGG 1036

Query: 254  GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
            G     ++   ++    + +      K  TI   S GE+ +  + +  +  RL       
Sbjct: 1037 GHAYLELTGEDMLDTGIAIMARPPGKKNSTIHLLSGGEKALTAIALVFSIFRL-----NP 1091

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
            AP  +LDE+ A LD+       R+V ++  Q+
Sbjct: 1092 APFCMLDEVDAPLDDANVGRYARMVEEMSKQV 1123


>gi|120556271|ref|YP_960622.1| DNA repair protein RecN [Marinobacter aquaeolei VT8]
 gi|120326120|gb|ABM20435.1| DNA replication and repair protein RecN [Marinobacter aquaeolei
           VT8]
          Length = 559

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 58/208 (27%), Gaps = 28/208 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +S +     + L F+   T   G+ G GK+ +L+A+     GR     + A   R
Sbjct: 2   LTQLTVSNYAIAERVELQFNRGMTALTGETGAGKSIVLDALGLAMGGR-----ADAGAVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+                  ++     ++   D  ++     D   +   IN       
Sbjct: 57  HGAKRADITASFDISRIPEARSWLENHELDDKDDCILRRTISKDGRSKAF-INGQPCPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLM 166
            + EL   L           +        R+ LD    A           +      + +
Sbjct: 116 QLKELGGLLMDIHSQHQHQSLLRK--ETHRKLLDEFAGAESLADETRSAWKAWHQTRQKL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           + R     E             ++  L 
Sbjct: 174 QQRQHNADEAEARLQLLRYQVEELDRLA 201


>gi|312622428|ref|YP_004024041.1| DNA repair protein recn [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202895|gb|ADQ46222.1| DNA repair protein RecN [Caldicellulosiruptor kronotskyensis 2002]
          Length = 551

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 118/327 (36%), Gaps = 56/327 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I        L + FD   TI  G+ G GK+ I++++S L   + F+     ++ R
Sbjct: 2   LKRLLIENIAIIDRLDIEFDKGLTILTGETGAGKSIIIDSLSLLLGTK-FK----KEIIR 56

Query: 67  IGS-PSFFSTFARVEG---MEGLADISIKLETR--------DDRSVRCLQIN-------- 106
            G   +  S    +E    +E L  + I LE                  ++N        
Sbjct: 57  TGCTKACVSAVFEIEKKSTIERLTQMGISLEDNYLIVSREVYSSGKNICRVNNQFVLLST 116

Query: 107 -DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
              + + + E++       L     ++         RF  R +  +   ++    D++  
Sbjct: 117 LREITKHIFEIHGQNETHLLNDKRIQLLYID-----RFCGRELEELKAEYKDLYHDYQEK 171

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAE-------LGVKI-NIARVEMINALSSLIMEYVQ 217
            R   +++T+          +  Q+ E       +G  I    R E+I   +S  +++  
Sbjct: 172 KRLYEQIITKEEERERQLDLLNYQINEIESVKPQIGEDIELEKRKEIIQ--NSWKLKHNS 229

Query: 218 KENFPHIKLSLTGFLD---------GKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLI 266
           ++    I  ++   L+          +FD+ F A+ E      ++   +      +    
Sbjct: 230 EKMLDTINNTIIDSLEMCIRLANENSRFDKEFEAISERLNNVYYEIEDISFSISKKSQSY 289

Query: 267 GPHRSDL--IVDYCDK--AITIAHGST 289
             ++ ++  IVD  DK   +   +GST
Sbjct: 290 EVNKDEIEQIVDRLDKINRLKKKYGST 316


>gi|307826051|ref|ZP_07656264.1| chromosome segregation protein SMC [Methylobacter tundripaludum
           SV96]
 gi|307732890|gb|EFO03754.1| chromosome segregation protein SMC [Methylobacter tundripaludum
           SV96]
          Length = 1196

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K++ + +S F+++  S  +      T  VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MKLEKIKLSGFKSFVDSTVIPISGNLTAIVGPNGCGKSNIIDAVRWVMGESSAKHLRGGS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            ADV   GS              F +T +++ G     D                 +N  
Sbjct: 61  MADVIFNGSSGRKPVSTASVELVFNNTDSKLGGEYSQYDTIAIKRQVSRDGTSVFMLNGS 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 RCRRKD 126



 Score = 36.0 bits (82), Expect = 9.9,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 77/189 (40%), Gaps = 19/189 (10%)

Query: 171  RLLTEGYFDSSWCSSIEAQMAE---LGV---------KINIARVEMINALSSLIMEYVQK 218
            + L E   ++SW  +++  +A+   LG          K    R+  +N   + ++E +Q 
Sbjct: 968  QSLPEQAEENSWKRTVDDLLAQIERLGTINLTAIEEYKAQSERMNFLNEQHADLIEALQT 1027

Query: 219  ENFPHIKLSLTGFLDGK--FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
             +    K+     L  K  FD+    L+E++ K    G     ++ +  +    + +   
Sbjct: 1028 LDQAISKIDKESRLRFKETFDKINTGLQEKFPKLFGGGHAYLELTEQDELESGVNIIARP 1087

Query: 277  YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
               K  +I   S GE+ +  V +  +   L       AP  LLDE+ A LD+       +
Sbjct: 1088 PGKKNSSIHLLSGGEKALTAVALVFSIFEL-----NPAPFCLLDEVDAPLDDANVGRFSK 1142

Query: 337  IVTDIGSQI 345
            +V ++ + +
Sbjct: 1143 MVEEMSASV 1151


>gi|296114063|ref|YP_003628001.1| DNA repair protein RecN [Moraxella catarrhalis RH4]
 gi|295921757|gb|ADG62108.1| DNA repair protein RecN [Moraxella catarrhalis RH4]
 gi|326559450|gb|EGE09873.1| DNA repair protein RecN [Moraxella catarrhalis 7169]
 gi|326561288|gb|EGE11647.1| DNA repair protein RecN [Moraxella catarrhalis 46P47B1]
          Length = 568

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 67/231 (29%), Gaps = 23/231 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L            + FD +  +  G+ G GK+ IL+A+S     R     + + + R
Sbjct: 2   LISLTFENLALIEQKHIDFDDRFNVITGETGAGKSLILDALSLCVGER-----ADSSMVR 56

Query: 67  IGSPSF-----------FSTFARVEGMEGL-ADISIKLETRDDRSVR-CLQINDVVIRVV 113
            G                   A  E  +    D ++ +  +     R    IN V   + 
Sbjct: 57  HGCDEASVFGEFDISGNAQVIAWFEQHDRKLEDETLLIRRKISNQGRSKSWINGVPASIS 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           +  +    +  +      +          +LDR+               +        L 
Sbjct: 117 ELKSLGSMLVNIHSQHAGLELLKPQFIVDWLDRIG-----GFGDLKAAAKTAFHHYQTLK 171

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +     S  +    +MA L  K+      ++     +  EY +  N   +
Sbjct: 172 RQADDARSQSAQRADRMALLSAKLTDIEPLLLVDFQEIEAEYDELSNLESL 222


>gi|296170185|ref|ZP_06851779.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
          ATCC BAA-614]
 gi|295895137|gb|EFG74854.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
          ATCC BAA-614]
          Length = 873

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L   R
Sbjct: 1  MKLHRLILTNYRGIAHREIEFPDHGVVVVCGANEIGKSSMIEALDLLLECR 51


>gi|254689616|ref|ZP_05152870.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus bv. 6 str.
           870]
 gi|256257865|ref|ZP_05463401.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus bv. 9 str.
           C68]
 gi|260755143|ref|ZP_05867491.1| DNA repair protein RecN [Brucella abortus bv. 6 str. 870]
 gi|260884155|ref|ZP_05895769.1| DNA repair protein RecN [Brucella abortus bv. 9 str. C68]
 gi|297248701|ref|ZP_06932419.1| DNA repair protein RecN [Brucella abortus bv. 5 str. B3196]
 gi|260675251|gb|EEX62072.1| DNA repair protein RecN [Brucella abortus bv. 6 str. 870]
 gi|260873683|gb|EEX80752.1| DNA repair protein RecN [Brucella abortus bv. 9 str. C68]
 gi|297175870|gb|EFH35217.1| DNA repair protein RecN [Brucella abortus bv. 5 str. B3196]
          Length = 559

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L + F +  ++  G+ G GK+ +L+++S     RG      A + R
Sbjct: 2   LSHLSIRDIVLIERLDIEFRSGLSVLTGETGAGKSILLDSLSLALGARG-----DASLVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRV 112
            G+                   F R  G +   DI ++     D   R    +    + +
Sbjct: 57  HGADQGQVTAVFDVPGNHPARLFLRENGFDDDGDIILRRLQMGDGRTRVFINDQAASVAL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMR 167
           + +L K L           +    +   R  LD          +     +   D E  + 
Sbjct: 117 LRDLGKRLVEIHGQHDDRALI--DTDLHRTLLDAFGGLDAQAMLVRERHKAWRDAESALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
                + +   +  +  S   ++ +L
Sbjct: 175 KHRARVEQAEREGDYLRSSVEELTKL 200


>gi|226952348|ref|ZP_03822812.1| possible ATP-dependent endonuclease of the OLD family-like
          protein [Acinetobacter sp. ATCC 27244]
 gi|226836900|gb|EEH69283.1| possible ATP-dependent endonuclease of the OLD family-like
          protein [Acinetobacter sp. ATCC 27244]
          Length = 248

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +KI    I  FR   ++ L FD + T+ VG N  GKT+  E       G  
Sbjct: 1  MKIISAKIRNFRKLENVTLSFDEKTTVIVGRNNTGKTSTAEIFRSFLSGNS 51


>gi|160872306|ref|ZP_02062438.1| chromosome segregation protein SMC [Rickettsiella grylli]
 gi|159121105|gb|EDP46443.1| chromosome segregation protein SMC [Rickettsiella grylli]
          Length = 1176

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          ++++ + ++ F+++    +  F    T  VG NG GK+NI++AI ++   S  +  R  S
Sbjct: 1  MRLESIQLAGFKSFVDPTIVSFPTNLTAVVGPNGCGKSNIIDAIRWVMGESSAKQLRGES 60

Query: 61 YADVTRIGS 69
            DV   G 
Sbjct: 61 LDDVIFNGC 69


>gi|62290314|ref|YP_222107.1| DNA repair protein [Brucella abortus bv. 1 str. 9-941]
 gi|82700238|ref|YP_414812.1| DNA repair protein RecN [Brucella melitensis biovar Abortus 2308]
 gi|148559431|ref|YP_001259313.1| DNA repair protein RecN [Brucella ovis ATCC 25840]
 gi|189024548|ref|YP_001935316.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
 gi|237815821|ref|ZP_04594818.1| DNA repair protein RecN [Brucella abortus str. 2308 A]
 gi|254694106|ref|ZP_05155934.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697758|ref|ZP_05159586.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702143|ref|ZP_05163971.1| ATP/GTP-binding site motif A (P-loop) [Brucella suis bv. 5 str.
           513]
 gi|254708094|ref|ZP_05169922.1| ATP/GTP-binding site motif A (P-loop) [Brucella pinnipedialis
           M163/99/10]
 gi|254710463|ref|ZP_05172274.1| ATP/GTP-binding site motif A (P-loop) [Brucella pinnipedialis
           B2/94]
 gi|254714456|ref|ZP_05176267.1| ATP/GTP-binding site motif A (P-loop) [Brucella ceti M644/93/1]
 gi|254717354|ref|ZP_05179165.1| ATP/GTP-binding site motif A (P-loop) [Brucella ceti M13/05/1]
 gi|254730647|ref|ZP_05189225.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus bv. 4 str.
           292]
 gi|256031957|ref|ZP_05445571.1| ATP/GTP-binding site motif A (P-loop) [Brucella pinnipedialis
           M292/94/1]
 gi|256061479|ref|ZP_05451623.1| ATP/GTP-binding site motif A (P-loop) [Brucella neotomae 5K33]
 gi|256255362|ref|ZP_05460898.1| ATP/GTP-binding site motif A (P-loop) [Brucella ceti B1/94]
 gi|256369837|ref|YP_003107348.1| DNA repair protein RecN [Brucella microti CCM 4915]
 gi|260169094|ref|ZP_05755905.1| DNA repair protein RecN [Brucella sp. F5/99]
 gi|260546857|ref|ZP_05822596.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
           8038]
 gi|260758362|ref|ZP_05870710.1| DNA repair protein RecN [Brucella abortus bv. 4 str. 292]
 gi|260762188|ref|ZP_05874531.1| DNA repair protein RecN [Brucella abortus bv. 2 str. 86/8/59]
 gi|261214404|ref|ZP_05928685.1| DNA repair protein RecN [Brucella abortus bv. 3 str. Tulya]
 gi|261219184|ref|ZP_05933465.1| DNA repair protein RecN [Brucella ceti M13/05/1]
 gi|261222563|ref|ZP_05936844.1| DNA repair protein RecN [Brucella ceti B1/94]
 gi|261315596|ref|ZP_05954793.1| DNA repair protein RecN [Brucella pinnipedialis M163/99/10]
 gi|261318034|ref|ZP_05957231.1| DNA repair protein RecN [Brucella pinnipedialis B2/94]
 gi|261322245|ref|ZP_05961442.1| DNA repair protein RecN [Brucella ceti M644/93/1]
 gi|261325485|ref|ZP_05964682.1| DNA repair protein RecN [Brucella neotomae 5K33]
 gi|261752712|ref|ZP_05996421.1| DNA repair protein RecN [Brucella suis bv. 5 str. 513]
 gi|261758599|ref|ZP_06002308.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
           F5/99]
 gi|265989065|ref|ZP_06101622.1| DNA repair protein RecN [Brucella pinnipedialis M292/94/1]
 gi|294852748|ref|ZP_06793421.1| DNA repair protein RecN [Brucella sp. NVSL 07-0026]
 gi|62196446|gb|AAX74746.1| RecN, DNA repair protein [Brucella abortus bv. 1 str. 9-941]
 gi|82616339|emb|CAJ11396.1| ATP/GTP-binding site motif A (P-loop):ABC transporter:DNA repair
           protein RecN [Brucella melitensis biovar Abortus 2308]
 gi|148370688|gb|ABQ60667.1| DNA repair protein RecN [Brucella ovis ATCC 25840]
 gi|189020120|gb|ACD72842.1| ATP/GTP-binding site motif A (P-loop) [Brucella abortus S19]
 gi|237789119|gb|EEP63330.1| DNA repair protein RecN [Brucella abortus str. 2308 A]
 gi|256000000|gb|ACU48399.1| DNA repair protein RecN [Brucella microti CCM 4915]
 gi|260095907|gb|EEW79784.1| ATP/GTP-binding site-containing protein A [Brucella abortus NCTC
           8038]
 gi|260668680|gb|EEX55620.1| DNA repair protein RecN [Brucella abortus bv. 4 str. 292]
 gi|260672620|gb|EEX59441.1| DNA repair protein RecN [Brucella abortus bv. 2 str. 86/8/59]
 gi|260916011|gb|EEX82872.1| DNA repair protein RecN [Brucella abortus bv. 3 str. Tulya]
 gi|260921147|gb|EEX87800.1| DNA repair protein RecN [Brucella ceti B1/94]
 gi|260924273|gb|EEX90841.1| DNA repair protein RecN [Brucella ceti M13/05/1]
 gi|261294935|gb|EEX98431.1| DNA repair protein RecN [Brucella ceti M644/93/1]
 gi|261297257|gb|EEY00754.1| DNA repair protein RecN [Brucella pinnipedialis B2/94]
 gi|261301465|gb|EEY04962.1| DNA repair protein RecN [Brucella neotomae 5K33]
 gi|261304622|gb|EEY08119.1| DNA repair protein RecN [Brucella pinnipedialis M163/99/10]
 gi|261738583|gb|EEY26579.1| ATP/GTP-binding site domain-containing protein A [Brucella sp.
           F5/99]
 gi|261742465|gb|EEY30391.1| DNA repair protein RecN [Brucella suis bv. 5 str. 513]
 gi|264661262|gb|EEZ31523.1| DNA repair protein RecN [Brucella pinnipedialis M292/94/1]
 gi|294821337|gb|EFG38336.1| DNA repair protein RecN [Brucella sp. NVSL 07-0026]
          Length = 559

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L + F +  ++  G+ G GK+ +L+++S     RG      A + R
Sbjct: 2   LSHLSIRDIVLIERLDIEFRSGLSVLTGETGAGKSILLDSLSLALGARG-----DASLVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRV 112
            G+                   F R  G +   DI ++     D   R    +    + +
Sbjct: 57  HGADQGQVTAVFDVPGNHPARLFLRENGFDDDGDIILRRLQMGDGRTRVFINDQAASVAL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMR 167
           + +L K L           +    +   R  LD          +     +   D E  + 
Sbjct: 117 LRDLGKRLVEIHGQHDDRALI--DTDLHRTLLDAFGGLDAQAMLVRERHKAWRDAESALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
                + +   +  +  S   ++ +L
Sbjct: 175 KHRARVEQAEREGDYLRSSVEELTKL 200


>gi|327183845|gb|AEA32292.1| DNA repair protein recn [Lactobacillus amylovorus GRL 1118]
          Length = 560

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 21/130 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG       ++ R
Sbjct: 2   LVELDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRG-----QKEMIR 56

Query: 67  IGSPSFFST-----------FARVEGMEGLADISIKLETRDD---RSVRCLQINDV--VI 110
            G      T            A++    GL     +L    +   +    ++IN     I
Sbjct: 57  SGENKAVITGLFELDDQKEKIAQLCDQYGLPHDDDQLVISRELAVKGRNVVRINGQLTTI 116

Query: 111 RVVDELNKHL 120
            V+ +L  +L
Sbjct: 117 NVLRDLGHYL 126


>gi|326566130|gb|EGE16287.1| DNA repair protein RecN [Moraxella catarrhalis BC1]
 gi|326572808|gb|EGE22793.1| DNA repair protein RecN [Moraxella catarrhalis CO72]
          Length = 568

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 67/231 (29%), Gaps = 23/231 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L            + FD +  +  G+ G GK+ IL+A+S     R     + + + R
Sbjct: 2   LISLTFENLALIEQKHIDFDDRFNVITGETGAGKSLILDALSLCVGER-----ADSSMVR 56

Query: 67  IGSPSF-----------FSTFARVEGMEGL-ADISIKLETRDDRSVR-CLQINDVVIRVV 113
            G                   A  E  +    D ++ +  +     R    IN V   + 
Sbjct: 57  HGCDEASVFGEFDISGNAQVIAWFEQHDRKLEDETLLIRRKISNQGRSKSWINGVPASIS 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           +  +    +  +      +          +LDR+               +        L 
Sbjct: 117 ELKSLGSMLVNIHSQHAGLELLKPQFIVDWLDRIG-----GFGDLKAAAKTAFHHYQTLK 171

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +     S  +    +MA L  K+      ++     +  EY +  N   +
Sbjct: 172 RQADDARSQSAQRADRMALLSAKLTDIEPLLLVDFQEIEAEYDELSNLESL 222


>gi|326485241|gb|EGE09251.1| chromosome segregation protein sudA [Trichophyton equinum CBS
          127.97]
          Length = 1151

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MFIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 14/143 (9%)

Query: 216  VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD----GRKMDSMSRRT-LIGPHR 270
               ++   + + L    D   +++F  +  E+A+        GR    + R+T      +
Sbjct: 973  ASHKSIDELIMILDQRKDEAIERTFKQVSREFARIFEKLAPAGRGRLIIQRKTDAATRQQ 1032

Query: 271  SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
             D+  D  +    I   S G++ +  + +  A           AP  L DEI A+LD   
Sbjct: 1033 EDMDSDDEEARARIQQLSGGQKSLCALALVFA-----IQACDPAPFYLFDEIDANLDAQY 1087

Query: 331  RNALFRIVT----DIGSQIFMTG 349
            R A+ +++     +   Q   T 
Sbjct: 1088 RTAVAQMLQSISEETNGQFICTT 1110


>gi|328542327|ref|YP_004302436.1| hypothetical protein SL003B_0707 [polymorphum gilvum SL003B-26A1]
 gi|326412074|gb|ADZ69137.1| hypothetical protein SL003B_0707 [Polymorphum gilvum SL003B-26A1]
          Length = 294

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR-ASYAD 63
          +K+K   I  +R+     L+   Q T  +G N  GK+N+L A+  L+P  GF+  +   D
Sbjct: 1  MKLKQFRIQNYRSITDSGLIHVGQLTSLLGRNESGKSNLLRALHSLNPSDGFKALSKVKD 60

Query: 64 VTRI 67
            R 
Sbjct: 61 FPRH 64


>gi|238019892|ref|ZP_04600318.1| hypothetical protein VEIDISOL_01768 [Veillonella dispar ATCC 17748]
 gi|237863416|gb|EEP64706.1| hypothetical protein VEIDISOL_01768 [Veillonella dispar ATCC 17748]
          Length = 960

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
           ++   R  + N L S + ++  +    H         + +       L   Y ++L  G 
Sbjct: 788 QMLQEREALQNELESALEDWATQVLMSHCMDKAQQSYEQEKQPHMLELASSYIERLTGG- 846

Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
               M    ++G +    +V+   + + + + S+G    V + + LA A++ S     + 
Sbjct: 847 ----MYTFDVLGINEGVALVNGNGERLELKYWSSGLADQVYLALRLALAKVFSYQV-ESL 901

Query: 316 ILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
            ++LD+I    DE+++ +   ++ +IG   QI++    +SVFD 
Sbjct: 902 PIILDDILVRFDENRQRSALELLAEIGKNQQIWLFTCQRSVFDM 945



 Score = 39.9 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR----A 59
          + IK +   EF  Y        +    +  G N  GKT++LE +  L  G   +      
Sbjct: 1  MNIKRIRFDEFGPYCDWSFTTGNHGVQLMYGPNESGKTSLLEGMRTLLFGGTHKAYGSMT 60

Query: 60 SYADVTRIGSPSFFSTFAR 78
             DV R G   +     +
Sbjct: 61 GALDVERNGESYYIGRKGK 79


>gi|227893302|ref|ZP_04011107.1| DNA repair protein [Lactobacillus ultunensis DSM 16047]
 gi|227864882|gb|EEJ72303.1| DNA repair protein [Lactobacillus ultunensis DSM 16047]
          Length = 560

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 44/226 (19%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  + T+ +G+ G GK+ I++A+S L  GRG       ++ R
Sbjct: 2   LVELDIKNFAIIKSLKVRFQEKMTVIIGETGAGKSIIIDAVSLLMGGRG-----QKEMIR 56

Query: 67  IGSPSFFST-----------FARVEGMEGLADISIKLETRDD---RSVRCLQINDV--VI 110
            G      T            A +    GL     +L    +   +    ++IN     I
Sbjct: 57  SGEKKAVITGLFELDDQKDKIAELCDKYGLPHDDDQLVISRELAVKGRNVVRINGQLTTI 116

Query: 111 RVVDELNKHL-------RISWLVPSMDRI----------FSGLSMERR-RFLDRMVFAID 152
            V+ E+  +L           L+    +I          F     + +  F+        
Sbjct: 117 NVLREIGHYLVDIHGQHDQQILMDQDRQIDLVDNYAPASFKDDLKDYQADFVKWQNLTKK 176

Query: 153 PRHR----RRMIDFERLMR-GRNRLLTEGYFDSSWCSSIEAQMAEL 193
            RH     + +   + +++   N L +    D      +E +  EL
Sbjct: 177 LRHLRQDAQELAQKQDILQFQNNELESADLEDPQEDDKLEEEYNEL 222


>gi|108758892|ref|YP_635346.1| hypothetical protein MXAN_7233 [Myxococcus xanthus DK 1622]
 gi|108462772|gb|ABF87957.1| hypothetical protein MXAN_7233 [Myxococcus xanthus DK 1622]
          Length = 487

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 66/383 (17%), Positives = 136/383 (35%), Gaps = 58/383 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILE-AISFLSPGRGFRRASYA 62
           +K+++L + +FR+     RL+F     + +G+NG GK+ +L+ A + +S      R    
Sbjct: 76  LKLQWLQVHQFRSVKPGTRLLFSPSLNVLLGENGTGKSTLLDLAAAVVSSDFTPLRHEAF 135

Query: 63  DVTRIGSPSFFSTFARVE----GMEGLADISIKLET------------RDDRSVRCLQIN 106
           D+    +        RV     G EG + +S+ +              R+ + +R  + +
Sbjct: 136 DLEYALAADTGRITVRVRNVPSGAEGTSGLSMDITVAPRDMAWPLVIHREGQQLRVSRED 195

Query: 107 DVV----IRVVDELNKHLRISWLVPSMDRIFSGL----SMERRRFLDRMVF-AID-PRHR 156
           D       R+  E+   L +  +   +  +        S+E    + R V    D  R  
Sbjct: 196 DTTDVVHERIAPEVGGRLWLVLMTGGIAWVEKTGEGTASVEPMLAMAREVSAQADLHRFD 255

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
             +  F++L R   RL              E  +A  G  +     ++++ L  +     
Sbjct: 256 EGLAHFDQLWRAELRLSRRT----------EGVLAT-GTGVAS--EDLLDGLRKVAAAQW 302

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL-IV 275
                   +  L+         +   L    A+ L    +     +   +     DL  V
Sbjct: 303 GAS-----RYVLSSENVPFLRDAARLLGFASAEALLSPLETQPQGKYETLSLGNLDLCFV 357

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
               + ++      G++++V    +LAHAR          +++ DE++      +  A+ 
Sbjct: 358 TAAGQRLSARQLGYGQKRLVAFLHYLAHAR---------AVVIADEVAHAFHPRQVRAIL 408

Query: 336 RIVTDIGSQIFMTGTDKSVFDSL 358
             +     Q  +T     + DSL
Sbjct: 409 EQLE--PRQALLTSQSPELLDSL 429


>gi|85375774|ref|YP_459836.1| hypothetical protein ELI_14735 [Erythrobacter litoralis HTCC2594]
 gi|84788857|gb|ABC65039.1| hypothetical protein ELI_14735 [Erythrobacter litoralis HTCC2594]
          Length = 395

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS---FLSPGRGFRRASYA 62
          I  +    F  +  L L    +  + +G NG GKT++L+AI     ++ G+   R+  A
Sbjct: 2  IFKVEFENFTAFEKLNLSLSPRINVIIGSNGTGKTHLLKAIYGLNLIADGKFLERSKDA 60


>gi|269965200|ref|ZP_06179334.1| DNA repair protein RecN [Vibrio alginolyticus 40B]
 gi|269830186|gb|EEZ84413.1| DNA repair protein RecN [Vibrio alginolyticus 40B]
          Length = 554

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----ADAGMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  + L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFLLDNNLHATRWLEDNDLLDGSECILRRIITKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+    ++         +     +  ++
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMK--SEHQMAMLDQYAGHLNLLKSTRSAYQHWRQADNNLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
                  +             ++ EL 
Sbjct: 175 QLKENSQQNQAQKQLLEYQIKELNELS 201


>gi|260945319|ref|XP_002616957.1| hypothetical protein CLUG_02401 [Clavispora lusitaniae ATCC 42720]
 gi|238848811|gb|EEQ38275.1| hypothetical protein CLUG_02401 [Clavispora lusitaniae ATCC 42720]
          Length = 1193

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 89/274 (32%), Gaps = 27/274 (9%)

Query: 5   IKIKFLNISEFRNYASL-RLVF-DAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F+ Y +   +        + VG NG GK+N   AI   LS          
Sbjct: 1   MYIKKIIIQGFKTYKNTTEIDLLSPHFNVVVGRNGSGKSNFFAAIRFVLSDTYTHMTREE 60

Query: 62  AD-VTRIGSPSFFSTFARV-------EGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              +   GS +  S +  +              +I+I+      +    +         +
Sbjct: 61  RQGLIHEGSGTVMSAYVEIIFDNSDRRFPIQKDEIAIRRTIGLKKDDYSMDGRSATRSDI 120

Query: 114 DELNKHLRISWLVPSM-------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
             L +    S   P           + +    ER   L  +  A       ++ +  + M
Sbjct: 121 MNLLESAGFSRSNPYYIVPQGKITALTNSKDSERLSLLKEVSGA--KVFEAKLKESTKEM 178

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
              N  L     D S    +E ++++L  ++    ++    L       + + N    +L
Sbjct: 179 AHSN--LKMDRIDESM-EKLEEKLSDL--QLESNDLKEYQQLEK--KRKIYEFNLFDREL 231

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           S       ++D+ + ++     K + +  K + +
Sbjct: 232 SSLSTQIQEYDEEYESVISSSHKDISELEKREKL 265



 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 27/171 (15%)

Query: 217  QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS-----RRTLIGPHRS 271
             K +   +  SL         +SF  + E + +                 +    G    
Sbjct: 1007 SKVSIEQLMKSLEQQKGNAIKKSFEQVSESFQEIFEKLVPNGIGRLVMRTKENTDGVLGD 1066

Query: 272  DLIVDYCDKAITIAHGS-----------TGEQKVV-LVGIFLAHARLISNTTGFAPILLL 319
              I DY   +I ++  S           +G QK +  + + LA           AP  L 
Sbjct: 1067 QSIEDYVGVSIQVSFNSKEDEQLQIEQLSGGQKSLCAIALILA-----IQKCDPAPFYLF 1121

Query: 320  DEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRIS 368
            DE+ A+LD   R A+  ++  +   +Q   T       + L     F  +S
Sbjct: 1122 DEVDANLDTQYRTAVANMIQALAKSAQFICTT---FRPEMLQVANMFFGVS 1169


>gi|237742052|ref|ZP_04572533.1| chromosome partition protein smc [Fusobacterium sp. 4_1_13]
 gi|229429700|gb|EEO39912.1| chromosome partition protein smc [Fusobacterium sp. 4_1_13]
          Length = 1183

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           + +K + I+ F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++      
Sbjct: 1   MYLKAVEINGFKSFGDKVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60

Query: 63  --DVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G      +T A V  +   AD  + L+    +  R + I+  
Sbjct: 61  SQDVIFSGGKEKKPATKAEVSLIIDNADRYLDLDNDTVKITRRIHISGE 109


>gi|330973609|gb|EGH73675.1| hypothetical protein PSYAR_24276 [Pseudomonas syringae pv. aceris
          str. M302273PT]
          Length = 765

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI--SFLSPGRGFR 57
          ++I+ L I+ FR   S+R+   A+ T+ VG N  GK++ + A+    LS    FR
Sbjct: 1  MQIQHLEIANFRKLLSVRVDLAAETTLLVGANNSGKSSAMLALRKFLLSKASIFR 55


>gi|326573748|gb|EGE23706.1| DNA repair protein RecN [Moraxella catarrhalis O35E]
          Length = 568

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 67/231 (29%), Gaps = 23/231 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L            + FD +  +  G+ G GK+ IL+A+S     R     + + + R
Sbjct: 2   LISLTFENLALIEQKHIDFDDRFNVITGETGAGKSLILDALSLCVGER-----ADSSMVR 56

Query: 67  IGSPSF-----------FSTFARVEGMEGL-ADISIKLETRDDRSVR-CLQINDVVIRVV 113
            G                   A  E  +    D ++ +  +     R    IN V   + 
Sbjct: 57  HGCDEASVFGEFDISGNAQVIAWFEQHDRKLEDETLLIRRKISNQGRSKSWINGVPASIS 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           +  +    +  +      +          +LDR+               +        L 
Sbjct: 117 ELKSLGSMLVNIHSQHAGLELLKPQFIVDWLDRIG-----GFGDLKAAAKTAFHHYQTLK 171

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +     S  +    +MA L  K+      ++     +  EY +  N   +
Sbjct: 172 RQADDARSQSAQRADRMALLSAKLTDIEPLLLVDFQEIEAEYDELSNLESL 222


>gi|308185970|ref|YP_003930101.1| DNA replication and repair protein recF [Pantoea vagans C9-1]
 gi|308056480|gb|ADO08652.1| DNA replication and repair protein recF [Pantoea vagans C9-1]
          Length = 368

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I+ + I  FR+  +L L    Q  +  G NG GK+N+ +A+  L
Sbjct: 1  MAIEQIQIRGFRSIRNLTLSLQ-QLNVVSGPNGCGKSNLYKAVRLL 45


>gi|290558912|gb|EFD92300.1| hypothetical protein BJBARM5_1095 [Candidatus Parvarchaeum
          acidophilus ARMAN-5]
          Length = 326

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 27/50 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + +  +N+   R+++  ++ F     I  G+ G GK++IL ++ +   G+
Sbjct: 1  MILSEINLENIRSHSITKIKFSEGINIITGNTGSGKSSILMSVEYALFGK 50


>gi|256845387|ref|ZP_05550845.1| chromosome segregation protein SMC [Fusobacterium sp. 3_1_36A2]
 gi|256718946|gb|EEU32501.1| chromosome segregation protein SMC [Fusobacterium sp. 3_1_36A2]
          Length = 1183

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           + +K + I+ F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++      
Sbjct: 1   MYLKAVEINGFKSFGDKVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60

Query: 63  --DVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G      +T A V  +   AD  + L+    +  R + I+  
Sbjct: 61  SQDVIFSGGKEKKPATKAEVSLIIDNADRYLDLDNDTVKITRRIHISGE 109


>gi|296812245|ref|XP_002846460.1| chromosome segregation protein sudA [Arthroderma otae CBS 113480]
 gi|238841716|gb|EEQ31378.1| chromosome segregation protein sudA [Arthroderma otae CBS 113480]
          Length = 1199

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MFIKQIIIQGFKSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 47



 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 91/293 (31%), Gaps = 22/293 (7%)

Query: 66   RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            +  + +      RV+    L + +  +E    R  + +Q    +     E + ++R   +
Sbjct: 879  QQNNEAAQLEQRRVDIKRELEEFAKSIEKHQRRMEKSMQKKAALTAQALECSANIRDLGV 938

Query: 126  VPSM-DRIFSGLSME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +P      F          +    +  +      +++    +    + R  L        
Sbjct: 939  LPDEAFTKFKNTDSNTIVKKLHKANEALKKYSHVNKKAFEQYNSFTKQRETLTKRREELD 998

Query: 181  SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   SI+  +  L  + + A       +S           F  +  +  G L  +     
Sbjct: 999  ASHKSIDELIMILDQRKDEAIERTFKQVSREFARI-----FEKLAPAGRGRLIIQRKTDA 1053

Query: 241  CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
               ++E      +  +  S+     +G   S       D    I   S G++ +  + + 
Sbjct: 1054 TVRQQEDMDSDEEEARR-SVENYIGVGISVS--FNSKHDDQQRIQQLSGGQKSLCALALV 1110

Query: 301  LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
             A           AP  L DEI A+LD   R A+ +++     +   Q   T 
Sbjct: 1111 FA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQMLQSISEETNGQFICTT 1158


>gi|14600457|ref|NP_146972.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1]
 gi|18203646|sp|Q9YFZ1|RAD50_AERPE RecName: Full=DNA double-strand break repair rad50 ATPase
 gi|5103499|dbj|BAA79020.1| DNA double-strand break repair rad50 ATPase [Aeropyrum pernix K1]
          Length = 919

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 2/108 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +    ++ +  + F    T  VG NG GK+ ILEAI F       +    + +  
Sbjct: 4   LKRLELRNIMSHFNTSIDFREGFTAIVGRNGAGKSTILEAILFSIT--PHQAPRRSSMIS 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             S       A       L ++  KL  R   +     I  +  R + 
Sbjct: 62  ENSSRGEIYLALQSSEGRLLELRNKLIRRGGGTNTEAAIITLEGRRIA 109



 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 16/176 (9%)

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +    ++  +AEL  +I+    E +  L + I E   ++      L L           
Sbjct: 709 EARLKEVQNTLAELDDRISRIDRE-MGELQTRIREMKSRKASGEEALKLYLPAAASRRIM 767

Query: 240 FCALKEEYAKKL--FDGRKMDSMSRRTLIGPHRS-------DLIVDYCDKA---ITIAHG 287
               +  Y + L   +    D +SR  L             ++ V           +   
Sbjct: 768 EEIGEIAYRRLLAVLEDEMNDILSRFNLDVAGVEIREKAAREIEVKAIGGNGAYRPLEAV 827

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
           S GE+ V+ +   LA   L     G    L LDE +A+LDED+R +L  ++  I  
Sbjct: 828 SGGERTVLALSFVLA---LNKAVGGKLGFLALDEPTANLDEDRRRSLVEVLRGISV 880


>gi|225450013|ref|XP_002272410.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297736324|emb|CBI24962.3| unnamed protein product [Vitis vinifera]
          Length = 1051

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 14/134 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  +  L+    ++  + +G NG GK++++ AI+    G      R +S   
Sbjct: 23  ITEIELHNFMTFNDLKCKPGSRLNLVIGPNGSGKSSLVCAIALGLGGDPQLLGRASSIGA 82

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVD--ELNKHL 120
             + G  S    + ++       +  I +  + D   +   + N  V+   D  E+ +  
Sbjct: 83  YVKRGEESG---YIKISLRGDTEEEQITIMRKIDTRNKSEWLFNGKVVPKKDVIEIVRRF 139

Query: 121 RISW-----LVPSM 129
            I        +P  
Sbjct: 140 NIQVNNLTQFLPQD 153


>gi|153833528|ref|ZP_01986195.1| DNA repair protein RecN [Vibrio harveyi HY01]
 gi|156973440|ref|YP_001444347.1| recombination and repair protein [Vibrio harveyi ATCC BAA-1116]
 gi|148870179|gb|EDL69120.1| DNA repair protein RecN [Vibrio harveyi HY01]
 gi|156525034|gb|ABU70120.1| hypothetical protein VIBHAR_01130 [Vibrio harveyi ATCC BAA-1116]
          Length = 554

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----ADAGMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  + L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFLLDNNLHATRWLEDNDLLDGSECILRRIITKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+    ++         +     +  ++
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMK--SEHQMAMLDQYAGHLNLLKSTRSAYQHWRQADNNLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
                  +             ++ EL 
Sbjct: 175 QLKENSQQNQAQKQLLEYQIKELNELS 201


>gi|104784196|ref|YP_610694.1| hypothetical protein PSEEN5290 [Pseudomonas entomophila L48]
 gi|95113183|emb|CAK17911.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 388

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 62/193 (32%), Gaps = 31/193 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ +R+   L +    +  +  G NG GK+N+ +A+  L+     R      +  
Sbjct: 2   LTTLAIANYRSINQLVMPLG-RLNVITGANGSGKSNLYKALRLLAETA--RGGVVNALAA 58

Query: 67  IG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G    +F++   ++     + +  + +E    +  R L+                    
Sbjct: 59  EGGLESTFWAGPEKL--TRRMLNGEVPVEGGPRQQARRLK------------------MG 98

Query: 125 LVPSMD--RIFSGLSM-ERRRF-LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                    I  GL    R +F LD  +   +      +      +  RN  + +   D 
Sbjct: 99  FAGEDFGYAISLGLPEPSRSKFALDPQIKQ-ETIWAGPLCRPASQLVQRNAGMVKAR-DG 156

Query: 181 SWCSSIEAQMAEL 193
                +   M E 
Sbjct: 157 RQWQVLHQHMTEF 169


>gi|50288973|ref|XP_446916.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526225|emb|CAG59849.1| unnamed protein product [Candida glabrata]
          Length = 1219

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 5/124 (4%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60
           + IK + I  F+ Y +  +   F   H + +G NG GK+N   A+ F+        +R  
Sbjct: 1   MYIKRVIIKGFKTYRNETIIGDFSPHHNVVIGANGSGKSNFFAAVRFVLSDDYSNLKREE 60

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
              +   G+  S  S    +   +    I        + S   ++I   V    D+   +
Sbjct: 61  RQGLIHQGAGASVMSASVEIVFHDPEHSIIAPTGINSNGSSDEVRIRRTVGLKKDDYQVN 120

Query: 120 LRIS 123
            R  
Sbjct: 121 DRNV 124



 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 279  DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            D+ + +   S G++ V  + + LA  +++      AP  L DEI A LD+  R A+ + +
Sbjct: 1107 DEQLKVEQLSGGQKTVCAIALILA-IQMVE----PAPFYLFDEIDAALDKQYRRAVAQTI 1161

Query: 339  TDI--GSQIFMTGTDKSVFDSLNETAKFMRIS 368
            + +   +Q   T     + D+ N   KF R+ 
Sbjct: 1162 SQLSNNAQFICTTFRSDMVDAAN---KFYRVK 1190


>gi|313114997|ref|ZP_07800490.1| segregation protein SMC [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622688|gb|EFQ06150.1| segregation protein SMC [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 1185

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 14/126 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           +  K L I  F+++   +++ FDA  T  VG NG GK+N+ +A+ ++      R+   A 
Sbjct: 1   MVFKELEIQGFKSFPDKVKIRFDAGVTGVVGPNGSGKSNLSDAVRWVLGETSSRQLRAAG 60

Query: 63  ---DVT-----RIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVI 110
              DV      R G+  F      ++  +   D+    + +  +  RS      IN  V 
Sbjct: 61  KMEDVIFGGTRRRGAMGFAQVRLTLDNADHTFDVDADEVTIGRKYYRSGDSEYTINGQVC 120

Query: 111 RVVDEL 116
           R+ D  
Sbjct: 121 RLKDVY 126


>gi|297301841|ref|XP_002805863.1| PREDICTED: structural maintenance of chromosomes protein 3-like
           [Macaca mulatta]
          Length = 1204

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 86/264 (32%), Gaps = 13/264 (4%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF-RRAS 60
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60

Query: 61  YADVTRIGS-PSFFSTFARV--EGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVD 114
              +   G+ P   S F  +  +  +    I    + L            ++  ++   D
Sbjct: 61  RLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKKMVTKND 120

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF-ERLMRGR-NRL 172
            +N      +   +   I       ++  L+ +       +   + +  +   R + N L
Sbjct: 121 VMNLLESAGFSRSNPYYIVKQG-KVKQFILNLVTTLHQRNNATVLKNLIQEGKREKINEL 179

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           L             + ++A+      + R       +  + E   K +    K   +G  
Sbjct: 180 LKYIEERLHTLEEEKEELAQYQKWDKMRRALEYTIYNQELNETRAKLDELSAKRETSGEK 239

Query: 233 DGKFDQSFCALKEEYAKKLFDGRK 256
             +   +    +++        R+
Sbjct: 240 SRQLRDAQQDARDKMEDIERQVRE 263



 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 895  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 952

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 953  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1012

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1013 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQS 1072

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1073 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1122

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1123 PAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 1169


>gi|293605220|ref|ZP_06687608.1| choline-sulfatase [Achromobacter piechaudii ATCC 43553]
 gi|292816405|gb|EFF75498.1| choline-sulfatase [Achromobacter piechaudii ATCC 43553]
          Length = 656

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 58/361 (16%), Positives = 115/361 (31%), Gaps = 58/361 (16%)

Query: 15  FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-TRIGSPSFF 73
           +++  +L         +  G NG GKT +LE +++   G      + + +   I   SF 
Sbjct: 67  YKSIGNLMWENVPPFAVITGLNGSGKTQLLEVLAYKLTGTTHHGINLSGINVSITGDSFG 126

Query: 74  STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133
           +              +  +   D +  R            D+L   +          R  
Sbjct: 127 AESVAYLPSRWEVTPAAYVGIPDMQQAR------------DQLWSEVYQQGHNTHDIRTV 174

Query: 134 SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +  +  R +F+       +    +R+ D                 D ++       +A L
Sbjct: 175 TKRARIR-KFMGDGATDQE-TFNKRLSD-----------------DYAFMLEDGDVVAGL 215

Query: 194 GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
              +   R+ M   L        Q ++   I+ S+           +  + E +    F 
Sbjct: 216 AHVLVAYRLRMAEGLE-------QGQSKDEIRKSI-------GPAPWDVINEAFQAADFP 261

Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
             ++ S  +  + G +   L        I     S+GE+ ++++ ++L      S   G 
Sbjct: 262 -YEVVSPVKTPIAGIYELKLQSKLTGDQIPPGDLSSGEKMLLVLVLWL----YNSQHHGR 316

Query: 314 AP-ILLLDEISAHLDEDKRNALFR-----IVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
            P +LLLDE  A+L               +V   G ++ MT T      +L        +
Sbjct: 317 FPKLLLLDEPDANLHPSMTRQFLNVVKEVLVAKYGVRVLMT-THSPSTVALAPEGSVFEM 375

Query: 368 S 368
           S
Sbjct: 376 S 376


>gi|300361957|ref|ZP_07058134.1| DNA repair protein RecN [Lactobacillus gasseri JV-V03]
 gi|300354576|gb|EFJ70447.1| DNA repair protein RecN [Lactobacillus gasseri JV-V03]
          Length = 562

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 93/249 (37%), Gaps = 29/249 (11%)

Query: 5   IK--IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           ++  +  L+I  F    +L++ F  + T+ +G+ G GK+ I++A+S L   R     +  
Sbjct: 1   MRKMLVELDIKNFAIIKTLKVRFQEKMTVLIGETGAGKSIIIDAVSLLLGSR-----AQN 55

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           ++ R G        A + G+  L++    +E   ++     + + ++I    EL    R 
Sbjct: 56  EMIRSGEKK-----AVITGLFVLSEQKELIEKLCEKYGLPFEDDQLIISR--ELTHKGRN 108

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR--GRNRLLTEGYFDS 180
              +       + L    R  +D      D          ++++    R   L + Y   
Sbjct: 109 VVRINGQLTTINVLREIGRNLVDIH-GQND----------QQILMDPDRQIDLIDNYAKP 157

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
            +   +E  +A+     ++     +  L     E  QK++    + +     D       
Sbjct: 158 KFKDELEDYVADFETWRHLTSQ--LRKLREDAQEIAQKQDILEFQNNELESADLTDPDED 215

Query: 241 CALKEEYAK 249
             L+EE+ +
Sbjct: 216 EKLEEEFNE 224


>gi|108562793|ref|YP_627109.1| hypothetical protein HPAG1_0368 [Helicobacter pylori HPAG1]
 gi|107836566|gb|ABF84435.1| hypothetical protein HPAG1_0368 [Helicobacter pylori HPAG1]
          Length = 370

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+ +   ++    +  I  G N VGK+N+LEA+  L  G+ 
Sbjct: 2  IQSVRIKNFKTFKDTQIDGFTKLNIITGGNNVGKSNLLEALYCL-VGKS 49


>gi|24379063|ref|NP_721018.1| DNA repair protein RecN [Streptococcus mutans UA159]
 gi|24376960|gb|AAN58324.1|AE014902_12 DNA repair protein RecN [Streptococcus mutans UA159]
          Length = 552

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I  F     + L F+   T+  G+ G GK+ +++A++ +   R     +  DV R
Sbjct: 2   LLEIAIKNFAIIEEISLNFERGMTVLTGETGAGKSIVIDAMNMMLGSR-----ASIDVIR 56

Query: 67  IGS-----PSFFST--------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            GS       FFS             +G+    ++ I+ E          +IN  ++ + 
Sbjct: 57  HGSPKAEIEGFFSVDKNPSLEQLLADQGIAFSDELIIRREI-LQNGRSISRINGQMVNLA 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRGRN 170
                   +  +    D+       +  + LD     VF +  +H + + D  R +R R 
Sbjct: 116 TLRAVGQYLVDIHGQHDQEELMRPQKHIQLLDEFGDEVFQVSKQHYQDLFDHYRDLRKRV 175

Query: 171 -RLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
                      +    +E Q+ E+           K+   R +++N
Sbjct: 176 LNKRKNEQEHQARIEMLEYQIGEIEAANLQSGEDTKLLKQRDKLMN 221


>gi|327348439|gb|EGE77296.1| cohesin complex subunit [Ajellomyces dermatitidis ATCC 18188]
          Length = 1270

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAFFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|225352265|ref|ZP_03743288.1| hypothetical protein BIFPSEUDO_03881 [Bifidobacterium
          pseudocatenulatum DSM 20438]
 gi|225157512|gb|EEG70851.1| hypothetical protein BIFPSEUDO_03881 [Bifidobacterium
          pseudocatenulatum DSM 20438]
          Length = 566

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          + IK + +  F+ ++ L++       I VGDN  GK+ +LE I+ +  G+ +R  S A 
Sbjct: 1  MYIKEMRVFGFKRFSKLQVELSPGINIVVGDNDAGKSTLLEVITAVLDGQ-YRGTSLAR 58


>gi|254471690|ref|ZP_05085091.1| chromosome segregation protein SMC [Pseudovibrio sp. JE062]
 gi|211958892|gb|EEA94091.1| chromosome segregation protein SMC [Pseudovibrio sp. JE062]
          Length = 1152

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 64/165 (38%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K + L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFQRLRVLGFKSFVEPMEFVIEDGLTGIVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSLNRPARNTAEVTLFLDNSDRTAPSGYNDSDTLEVTRRIEREAGSVYKINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
             R  D   L          P+M R      + S     RR+ L+
Sbjct: 121 DARARDVQLLFADASTGARSPAMVRQGQIGELISSKPTSRRKILE 165


>gi|168217095|ref|ZP_02642720.1| DNA sulfur modification protein DndD [Clostridium perfringens
          NCTC 8239]
 gi|182380778|gb|EDT78257.1| DNA sulfur modification protein DndD [Clostridium perfringens
          NCTC 8239]
          Length = 718

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHT----IFVGDNGVGKTNILEAISFLSPG 53
          + I  + +  FR+Y       F         +  G+NG GK+ + EAI     G
Sbjct: 1  MIINNITLKNFRSYEDETTFSFTPNGNKNIVLIGGENGAGKSTLFEAIKLCIYG 54



 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTD 340
           + I   S GE+++ ++ +  A    I  ++G     ++D   A +DE  RNAL    + +
Sbjct: 613 VNINDFSKGEKQIYILCLIWA----IIKSSGVEIPFIIDTPYARIDETHRNALTTTYLPN 668

Query: 341 IGSQIFMTGTDKSVFDSLNETAK 363
           I  Q+ +  T+K +   L +  K
Sbjct: 669 ISKQVIILSTNKEIDSDLYQVVK 691


>gi|83945739|ref|ZP_00958083.1| hypothetical protein OA2633_05812 [Oceanicaulis alexandrii
          HTCC2633]
 gi|83850829|gb|EAP88690.1| hypothetical protein OA2633_05812 [Oceanicaulis alexandrii
          HTCC2633]
          Length = 68

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          + +  + +  FRN+  L +     + + VG+N VGK+N+L
Sbjct: 1  MYLSRIKVENFRNFRDLDVALG-GNIVIVGENRVGKSNVL 39


>gi|67924115|ref|ZP_00517561.1| DNA repair protein RecN [Crocosphaera watsonii WH 8501]
 gi|67854040|gb|EAM49353.1| DNA repair protein RecN [Crocosphaera watsonii WH 8501]
          Length = 591

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 90/272 (33%), Gaps = 35/272 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L L F     +  G+ G GK+ IL+AI  +  G+         + R
Sbjct: 2   LSLLQIKNFALVDRLTLQFSQGLNVLTGETGAGKSIILDAIDVVLGGK-----VNNRLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADI-SIKLETRDDRSV---RCLQINDVVIRVVDELNKHL-R 121
            G+          E    LA +   +++T DD +V   R L +    +R    +N  L  
Sbjct: 57  QGTQQASLEATFEEDERVLAWLQQQEIDTLDDGTVVCLRELSLTGTTVRSRSRINGVLVN 116

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           +  +      +    +  +   L       +      +     +++ R            
Sbjct: 117 LQLMGQFRHLLVEITAQGQTVQLMDATRQRE---LLDLYGGNTILKQR------------ 161

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF-DQSF 240
                  ++ E   +      ++++       E +Q+ +   ++  +    + +  D   
Sbjct: 162 -------KLVESAYENWKKAEKILDKRKKSEQERLQRLDL--LEYQIKELDEAQLNDPDE 212

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
               E+   +L    ++  +S +T    ++ D
Sbjct: 213 LQQLEQERDRLSHVVELQKLSYQTYQLLYQDD 244


>gi|330952481|gb|EGH52741.1| hypothetical protein PSYCIT7_14124 [Pseudomonas syringae Cit 7]
          Length = 800

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K++   +  +R    + +  D + +IFVG N  GKT+ ++ +  +  G
Sbjct: 1  MKLQAYRLQNYRRLRDVVIELDDEISIFVGANKSGKTSAVQGLYSMLRG 49


>gi|321258803|ref|XP_003194122.1| subunit of the condensin complex; Smc4p [Cryptococcus gattii WM276]
 gi|317460593|gb|ADV22335.1| Subunit of the condensin complex, putative; Smc4p [Cryptococcus
           gattii WM276]
          Length = 1548

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            R+ I  L +  F++YA    +  F    +  VG NG GK+N ++A+ F+   R    R+
Sbjct: 244 PRLTIHKLVLVNFKSYAGRQEIGPFHKSFSAIVGPNGSGKSNTIDALLFVFGYRASKMRQ 303

Query: 59  ASYADVTRI--GSPSFFSTFARV 79
              +++     G  +  S    V
Sbjct: 304 GKLSELIHNSAGKDNLESCSVEV 326


>gi|282850886|ref|ZP_06260260.1| putative DNA repair protein RecN [Lactobacillus gasseri 224-1]
 gi|282557838|gb|EFB63426.1| putative DNA repair protein RecN [Lactobacillus gasseri 224-1]
          Length = 386

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 86/259 (33%), Gaps = 55/259 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L++ F  + T+ +G+ G GK+ I++A+S L   R     + +++ R
Sbjct: 2   LVELDIKNFAIIKTLKVRFQEKMTVLIGETGAGKSIIIDAVSLLLGSR-----AQSEMIR 56

Query: 67  IGSP--------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VI 110
            G                          G+    D  I       +    ++IN     I
Sbjct: 57  SGEEKAVITGLFVLSEQKELIEKLCEKYGLPFEDDQLIISRELTHKGRNVVRINGQLTTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+ K+L +     +  +I     M+  R +D +     P  +  + D+        
Sbjct: 117 NVLREIGKNL-VDIHGQNDQQIL----MDPERQIDLIDNYAKPEFKDELQDY-------- 163

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                   D      + +Q+                 L     E  QK++    + +   
Sbjct: 164 ------AADFETWRHLTSQL---------------RKLREDAQEIAQKQDILEFQNNELE 202

Query: 231 FLDGKFDQSFCALKEEYAK 249
             D         L+EE+ +
Sbjct: 203 SADLTDPDEDEKLEEEFNE 221


>gi|256026552|ref|ZP_05440386.1| chromosome partition protein smc [Fusobacterium sp. D11]
 gi|289764560|ref|ZP_06523938.1| chromosome partition protein smc [Fusobacterium sp. D11]
 gi|289716115|gb|EFD80127.1| chromosome partition protein smc [Fusobacterium sp. D11]
          Length = 699

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           + +K + I+ F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++      
Sbjct: 1   MYLKAVEINGFKSFGDKVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60

Query: 63  --DVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G      +T A V  +    D  + L+    +  R + I+  
Sbjct: 61  SQDVIFSGGKEKKPATKAEVSLIIDNTDRYLDLDNDTVKITRRIHISGE 109


>gi|193215482|ref|YP_001996681.1| ATPase-like protein [Chloroherpeton thalassium ATCC 35110]
 gi|193088959|gb|ACF14234.1| ATPase-like protein [Chloroherpeton thalassium ATCC 35110]
          Length = 384

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++IK L+++ F+++ + R+ F  +  I +G N  GK+N L+ + FL
Sbjct: 1  MRIKSLSVANFKSFRAFRVAFQ-KLNILIGANSAGKSNFLQILKFL 45


>gi|190895190|ref|YP_001985483.1| hypothetical protein RHECIAT_PC0000863 [Rhizobium etli CIAT 652]
 gi|190700851|gb|ACE94933.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 572

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 60/385 (15%), Positives = 113/385 (29%), Gaps = 68/385 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I+ FR    LR +        VG    GK+ IL+AI      R         +T 
Sbjct: 4   VRILEIANFRAIRKLRWLPGPGVNCLVGPGDSGKSTILDAIDLCLGAR-------RSLTF 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +      F      +    ISI L   DD            ++ +D     L      
Sbjct: 57  TDADFHGVDF------DQPIRISITLGALDD-----------PLKNIDAYGDFL--VGFS 97

Query: 127 PSMDRIFSGLSMERRRFLDRMV---FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
                + +         L   +     ++P         +   R RN    +    +   
Sbjct: 98  ALTGTVEAEPGAGLETALTLQLTVQSDLEPEWTLVSPRAQAAGRMRNLSWADRTRIAP-- 155

Query: 184 SSIEAQMAELG----VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                  A LG      +   R  +++ ++    +              +  L     + 
Sbjct: 156 -------ARLGGAGDSHLTWRRGSVLSKITEGKADA-------------SSELTRLAREM 195

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS---TGE----Q 292
             A  +E  K+L    K+ + +   +  P  + +       +I+   GS     E     
Sbjct: 196 RDAFDQEKLKELEGSLKIVTAAAGEMGVPVGAAVQALIDAGSISFTGGSISLHDESGIPL 255

Query: 293 KVVLV-GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS----QIFM 347
           + + +    L  A L       A   L+DE+   L+  +   L   +         Q+F 
Sbjct: 256 RSLGLGSSRLLIAALQRKAAEKATTFLIDELEYGLEPHRIIRLLGALGAKEEVPPMQVFA 315

Query: 348 TGTDKSVFDSLNET-AKFMRISNHQ 371
           T    +    L+      +R  +H+
Sbjct: 316 TSHSPTTVTELSAHQLHIVRHKDHE 340


>gi|183221549|ref|YP_001839545.1| putative nucleoside triphosphate hydrolase [Leptospira biflexa
          serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911630|ref|YP_001963185.1| ATP-dependent endonuclease [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167776306|gb|ABZ94607.1| ATP-dependent endonuclease [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167779971|gb|ABZ98269.1| Putative nucleoside triphosphate hydrolase [Leptospira biflexa
          serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 458

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPG 53
          KI+ + I  FR+  S  + F  + + + VG N  GK+NIL A+     G
Sbjct: 3  KIEHIEILNFRSIVSESIKFGCKEYNVIVGANNSGKSNILRALELFFNG 51


>gi|116052679|ref|YP_792995.1| hypothetical protein PA14_60070 [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|32481622|gb|AAP84136.1| pathogenesis-related protein [Pseudomonas aeruginosa PA14]
 gi|115587900|gb|ABJ13915.1| conserved hypothetical protein [Pseudomonas aeruginosa
          UCBPP-PA14]
          Length = 807

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K++   +  +R    + +  D + +IFVG N  GKT+ ++ +  +  G
Sbjct: 1  MKLQAYRLQNYRRLRDVVIELDDEISIFVGANNSGKTSAVQGLYSMLRG 49


>gi|10954531|ref|NP_044170.1| hypothetical protein MJECL44 [Methanocaldococcus jannaschii DSM
          2661]
 gi|2496242|sp|Q60299|Y3544_METJA RecName: Full=Uncharacterized protein MJECL44
 gi|1522677|gb|AAC37113.1| hypothetical protein MJ_ECL44 [Methanocaldococcus jannaschii DSM
          2661]
          Length = 331

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          MT  + +  + I  FR+     +       +FVG N  GK+NIL+A+++    +
Sbjct: 10 MTKTLHLTKVTIRNFRSIKVAHINNIGDIAVFVGANESGKSNILKALNWFGTDK 63


>gi|331701504|ref|YP_004398463.1| DNA repair protein RecN [Lactobacillus buchneri NRRL B-30929]
 gi|329128847|gb|AEB73400.1| DNA repair protein RecN [Lactobacillus buchneri NRRL B-30929]
          Length = 567

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 71/199 (35%), Gaps = 25/199 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF---RRASYA 62
           +  L+I++F     L + F A  T+  G+ G GK+ I++A+  L  GR      R  +  
Sbjct: 2   LLELSITDFAIIEHLDIDFQAGMTVLTGETGAGKSIIIDAVGLLVGGRGSHDLIRTGASK 61

Query: 63  DVTR-----IGSPSFFSTFAR--VEGMEGLADISIKLETRDDRSVRC--LQINDVVIRVV 113
            V +           ++      ++  +G   I   +      S R   + +N   ++ +
Sbjct: 62  AVIQGNFILHDDNPTYNVLDDLGIDHSDGNVIIERVIFANGRNSCRVNGIMVNIATLKRI 121

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLD----RMVFAIDPRHRRRMIDFERLMRGR 169
            E    ++          +         + LD      + ++   ++     +++ ++ R
Sbjct: 122 GETIVDIQGQ---NDHQELMR--PERHIQLLDDYAEDELASVLQSYQD---QYDQFIKLR 173

Query: 170 NRLLTEGYFDSSWCSSIEA 188
           +    +   +  W   ++ 
Sbjct: 174 DLNQKKHQNEKQWAQRVDM 192


>gi|325182712|emb|CCA17167.1| structural maintenance of chromosomes protein 3 put [Albugo
           laibachii Nc14]
          Length = 1215

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 11/123 (8%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + IK + +S FR+Y    +   F  +H + +G NG GK+N  +AI F      F   R  
Sbjct: 1   MHIKQVFVSGFRSYKDQLVVEPFSKEHNVVIGRNGTGKSNFFDAIRFGLLTSRFANLRTE 60

Query: 60  SYADVTRIGSPSFF-STFARV-----EGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
               +   GS     S F  +     +G   +    + L            +N   I   
Sbjct: 61  DRQALLHEGSGKHVMSAFVEIVFDNSDGRLPVDTEEVVLRRTIGVKKDEFFLNRKHISKS 120

Query: 114 DEL 116
           D +
Sbjct: 121 DVI 123



 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 92/289 (31%), Gaps = 60/289 (20%)

Query: 88   ISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147
            +  +L     +S + L     +++  D+L + +R    +P           E  ++ D  
Sbjct: 909  VEKELGKEGRQSEKLLNRRRTLMQKRDDLMRSIRELGTLP---------LKEVEKYKDVC 959

Query: 148  VFAIDPRHRRR---MIDFERLMR-----------GRNRLLTEGYFDSSWCSSIEAQMAEL 193
            +  +     +    + ++  + +            R  L+       S   SI    A L
Sbjct: 960  LSQVIKTFGKCRTKLKNYNHVNKKALDQYVSFEDQRTTLIKRKEELDSGYGSI----ASL 1015

Query: 194  GVKINIARVEMINALSSLIMEYVQKENFPHIK------LSLTGFLDGKFDQSFCALKEEY 247
               ++  + E I      +  +  +     +       L +      +  ++   ++E  
Sbjct: 1016 IEVLDRRKDEAILRTFKGVSHHFAQVFRELVPTGEGKMLIIRSDTSSESPENPEPIQEA- 1074

Query: 248  AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLI 307
                    K+D+ S   +       +       +  +   S G++ +V +    A     
Sbjct: 1075 --------KVDTFSGVQI------KVSFRGEGDSYLMQQLSGGQKALVALAFIFA----- 1115

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTD------IGSQIFMTGT 350
                  AP  LLDEI   LD   R A+  ++          +Q F+T T
Sbjct: 1116 IQRCDPAPFYLLDEIDQALDSTHRAAVASLIHRQAHSEVSPAQ-FITST 1163


>gi|325266163|ref|ZP_08132847.1| ATP/GTP-binding protein [Kingella denitrificans ATCC 33394]
 gi|324982393|gb|EGC18021.1| ATP/GTP-binding protein [Kingella denitrificans ATCC 33394]
          Length = 598

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASL--RLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+K ++I  FR+   L   +  D       G N VGKTN+L A++  
Sbjct: 1  MKLKRIDIKRFRSINDLKLEIDLDNNFISICGPNNVGKTNVLRALNLF 48


>gi|322390910|ref|ZP_08064418.1| hypothetical protein HMPREF8577_1888 [Streptococcus parasanguinis
           ATCC 903]
 gi|321142423|gb|EFX37893.1| hypothetical protein HMPREF8577_1888 [Streptococcus parasanguinis
           ATCC 903]
          Length = 679

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 16/167 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK + I  +R+     L      ++ VG N  GKT++L  +      + F + S  ++
Sbjct: 1   MEIKKIYIQHYRSLNDFSLELKNDLSLIVGKNNCGKTSVLSVLE-----KIFNKNSNRNL 55

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                   +         E   +I    +  D      L IN  +     EL+ +  I  
Sbjct: 56  V-------WEDINLNHRREIFENIKRVSDIPDSELSSILGINLQIWIQYSELDSYQNIQG 108

Query: 125 L----VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
                 P  + I    S        R + ++          FE  M+
Sbjct: 109 FMMDLNPENNFIILEFSYIIPTQKLREISSLTCDFADDFSKFESFMK 155


>gi|242278340|ref|YP_002990469.1| SMC domain protein [Desulfovibrio salexigens DSM 2638]
 gi|242121234|gb|ACS78930.1| SMC domain protein [Desulfovibrio salexigens DSM 2638]
          Length = 519

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 12/148 (8%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L +          + F A   +  G+ G GK+ IL AI FL  G+  R   
Sbjct: 1   MLELLRIRDLAL-----IEDAEIEFSAGMNVLTGETGAGKSFILRAIDFL-TGQKMRP-- 52

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+ R G    F     +      + +   L     RS   + +ND +           
Sbjct: 53  --DMVRPGKEQAFVEALFIHPDGSESIVRRVLSAETGRS--RVYVNDKLSSQNTIREMGA 108

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMV 148
            +        +        + R LD  +
Sbjct: 109 SMILHTSQHAQQKLLQPAYQCRMLDTFL 136


>gi|183232409|ref|XP_655216.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169802055|gb|EAL49829.2| hypothetical protein EHI_164820 [Entamoeba histolytica HM-1:IMSS]
          Length = 1201

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 4/105 (3%)

Query: 7   IKFLNISEFRNY-ASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRASYA 62
           IK +++  F++Y   L    FD  + + +G NG GK+N  +AI F+     F   RA   
Sbjct: 4   IKRISLKGFKSYQEQLNFDEFDPHYNVVIGRNGSGKSNFYDAIQFVLCDEKFGNLRAGDR 63

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                         A VE +    D    +E  +    RC+ +  
Sbjct: 64  QFLLYEGNGESVVSAFVEVVFDNRDRRFMIERDEVSVKRCIGLQK 108



 Score = 37.2 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 259  SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
             +   T  G     +   +   A TI   S G++ VV + +  A           AP  L
Sbjct: 1043 KIRTETYSGISLRVIFPAFGGDAKTIQQLSGGQKTVVALSLIFA-----IQRCDPAPFYL 1097

Query: 319  LDEISAHLDEDKRNALFRIVTD--IGSQIFMTGTDKSVFDSLNETAKFMRISN 369
             DEI ++LD   R A+  ++ +    +Q  +T       + +    K+  I +
Sbjct: 1098 FDEIDSNLDTVYREAVSSLIQEQSKEAQYIVTT---FRPELILPANKWYEIKH 1147


>gi|219847692|ref|YP_002462125.1| chromosome segregation protein SMC [Chloroflexus aggregans DSM
           9485]
 gi|219541951|gb|ACL23689.1| chromosome segregation protein SMC [Chloroflexus aggregans DSM
           9485]
          Length = 1189

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 18/160 (11%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + +K L I  F+ +AS  +  F       VG NG GK+N+ +A+ ++   +     R   
Sbjct: 1   MYLKRLEIQGFKTFASRTVFEFQPGIIAVVGPNGSGKSNLADAVRWVLGEQSMSALRCKQ 60

Query: 61  YADVT-----RIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSV-RCLQINDVVIR 111
             ++      R            ++  + L  +    + +  R  R+      IN   +R
Sbjct: 61  AGELLFAGGGRRPPAGLAEVALTIDNSDRLLPLDFDEVTITRRVTRTGENEYFINRARVR 120

Query: 112 VVDELN-----KHLRISWLVPSMDRIFSGLSMERRRFLDR 146
           + D L                 +D   +    +RRR  + 
Sbjct: 121 LRDLLAAVEPLGGSYTIINQGLVDAALTLRPADRRRLFED 160


>gi|82701778|ref|YP_411344.1| chromosome segregation protein SMC [Nitrosospira multiformis ATCC
           25196]
 gi|82409843|gb|ABB73952.1| condensin subunit Smc [Nitrosospira multiformis ATCC 25196]
          Length = 1190

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 51/223 (22%), Positives = 81/223 (36%), Gaps = 31/223 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++     + F       VG NG GK+N+++A+ ++   S     R  S
Sbjct: 1   MRLSHIKLAGFKSFVDPTEIPFPGDLVGVVGPNGCGKSNVIDAVRWVLGESRASALRGES 60

Query: 61  YADVTRIGSP------------SFFSTFARVEGM-EGLADISIKLETRDDRSVRCLQIND 107
             DV   GS             +F ++  +  G     A+I IK   R D       IN+
Sbjct: 61  MQDVIFNGSTTRKPVGRASVELAFDNSLGKAAGQWSSYAEICIKRVLRRD-GESTYYINN 119

Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
           + +R  D         L            + RI      E R FL+     I     RR 
Sbjct: 120 IHVRRRDIADIFLGTGLGGRGYAIIEQGMISRIIEAKPEELRVFLE-EAAGISKYRERRR 178

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
               RL   R  LL         C  +E Q+  LG +   AR 
Sbjct: 179 ETESRLADTRENLLRVN----DICQELEKQLVRLGQQAETARR 217



 Score = 36.8 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 67/187 (35%), Gaps = 35/187 (18%)

Query: 191  AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
            A L  ++N  R + I AL  +    +++      + +         +++   L+    + 
Sbjct: 967  AALQSEVNRLRGD-ITALGPVNTAALEELESCQTRKTYLDSQARDLEEASETLRNAIRRI 1025

Query: 251  LFDGRKM--DSMSRR---------TLIGPHRSDLIVDY---------------CDKAITI 284
              + R+   +++ +          T+ G   + L++                   K  +I
Sbjct: 1026 DRETRERLLETVEKVNAHLGDMFPTIFGGGHAKLMLRGEEILDAGVQIVAQPPGKKNSSI 1085

Query: 285  AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
               S GE+ +  +    +  +L       AP  +LDE+ A LD+        +V  +  Q
Sbjct: 1086 HLLSGGEKALTALAFVFSLFQL-----NPAPFCMLDEVDAPLDDSNTERFCNLVRKMSRQ 1140

Query: 345  ---IFMT 348
               +F++
Sbjct: 1141 TQFVFIS 1147


>gi|319779223|ref|YP_004130136.1| Chromosome partition protein smc [Taylorella equigenitalis MCE9]
 gi|317109247|gb|ADU91993.1| Chromosome partition protein smc [Taylorella equigenitalis MCE9]
          Length = 1173

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 18/129 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + +S F+++  +  +   +     VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1   MRLTHIKLSGFKSFVETTDIAIPSNLVGVVGPNGCGKSNIIDAVRWVLGESKASELRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGM-EGLADISIKLETRDDRSVRCLQIND 107
             DV   GS +            F +   R++G      +ISIK     D S     IN+
Sbjct: 61  MQDVIFNGSTNRKPAGRCSVELVFDNADGRLQGQWSSYTEISIKRVLTRDGSS-SYFINN 119

Query: 108 VVIRVVDEL 116
             +R  D  
Sbjct: 120 QNVRRKDVY 128



 Score = 37.2 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 10/155 (6%)

Query: 199  IARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
              R   +      + E +   +E    I       L   F+Q+     + + K    G  
Sbjct: 985  KERKLFLVKQIDDLQEAIDTLEEAINKIDAETRELLSDTFEQANSHFADMFPKLFGGGEA 1044

Query: 257  MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
               M    ++      +      +  +I   S GE+ +  + +  A  +L       AP 
Sbjct: 1045 KLRMIGDQILSSGIEVMAHPPGKRNTSIHLLSGGEKALTAIALVFALFKL-----NPAPF 1099

Query: 317  LLLDEISAHLDEDKRNALFRIVTDIG--SQ-IFMT 348
             LLDE+ A LD+        +V+++    Q +F++
Sbjct: 1100 CLLDEVDAPLDDANTERYADLVSEMSKDIQFVFIS 1134


>gi|300863910|ref|ZP_07108828.1| ATPase-like protein [Oscillatoria sp. PCC 6506]
 gi|300338096|emb|CBN53974.1| ATPase-like protein [Oscillatoria sp. PCC 6506]
          Length = 371

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 22/43 (51%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
           +  L I  FR    L L    Q  + VG N  GKT++LEAIS
Sbjct: 3  HLDNLTIHRFRGLRDLTLQDLGQINLLVGANNSGKTSVLEAIS 45


>gi|289764679|ref|ZP_06524057.1| DNA repair protein recN [Fusobacterium sp. D11]
 gi|289716234|gb|EFD80246.1| DNA repair protein recN [Fusobacterium sp. D11]
          Length = 558

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 83/261 (31%), Gaps = 28/261 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ ++ L I        L + F+    +  G+ G GK+ IL  I+ L   +     +
Sbjct: 1   MGRKLMLRELKIENLAIIDELDIEFEKGFIVLTGETGAGKSIILSGINLLIGEK-----A 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+ R G  +  +        E       KLE           I         +    +
Sbjct: 56  SVDMIRDGEENLVAQGVFDVDEEQKK----KLEAMGIDIDGDEIIIRRSYSRSGKARAFV 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
               +  +  +  +         L  +V     +      +  +L+   + L  +     
Sbjct: 112 NNVRITLADLKEIAST-------LVDIVGQHSHQMLLNKNNHIKLLD--SFLNKDEKDLK 162

Query: 181 SWCSSIEAQMAELGVK---INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
               S+ +Q  E+  K   I   R E +        E+ + +     KL L    D   +
Sbjct: 163 ENLVSLLSQYREINTKIENIERERKETLEK-----KEFYEYQLEEIEKLKLKDGEDEILE 217

Query: 238 QSFCAL--KEEYAKKLFDGRK 256
             +  +   E+  +K+++  +
Sbjct: 218 AEYKRVFNAEKIREKVYESLE 238


>gi|254774305|ref|ZP_05215821.1| hypothetical protein MaviaA2_06510 [Mycobacterium avium subsp.
          avium ATCC 25291]
          Length = 876

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L   +
Sbjct: 1  MKLHRLTLTNYRGIAHREIEFPDHGVVVVCGANEIGKSSMIEALDLLLEAK 51


>gi|238792831|ref|ZP_04636462.1| hypothetical protein yinte0001_5870 [Yersinia intermedia ATCC
           29909]
 gi|238727939|gb|EEQ19462.1| hypothetical protein yinte0001_5870 [Yersinia intermedia ATCC
           29909]
          Length = 864

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/209 (19%), Positives = 79/209 (37%), Gaps = 29/209 (13%)

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-----------RVEMINALSSLIMEY 215
           + R   L +         ++  +  EL  +I +A           R+++ N L+S+    
Sbjct: 501 KLREARLYKQASKKRKIDALIKESKELKARIMLAEKLEGLISLVGRLKLYNTLNSISFSA 560

Query: 216 VQKENFPHIKL----SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
           + K+     KL     ++  L    D+ F  L   + K +   R        +L+     
Sbjct: 561 LSKKVSDKSKLFANSIISNALKKDLDEEFSKLGVSHIKTVLKPRVSKGKVFYSLL----- 615

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
            L +   +K   I   S GEQ+ V +  FLA  +L +++ G    ++ D+  + LD  +R
Sbjct: 616 -LDIPVSNKVDLI--LSEGEQRAVSLASFLAELKLANHSCG----IIFDDPVSSLDHHRR 668

Query: 332 NALFRIV--TDIGSQIFMTGTDKSVFDSL 358
             +   +       Q+ +   D +    L
Sbjct: 669 RRVATRLVEEAKNRQVIILTHDIAFLSEL 697


>gi|227822791|ref|YP_002826763.1| hypothetical protein NGR_c22500 [Sinorhizobium fredii NGR234]
 gi|227341792|gb|ACP26010.1| hypothetical protein NGR_c22500 [Sinorhizobium fredii NGR234]
          Length = 610

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          +K     +  FRN      +   + T FVG N  GK+N+ EA+  L+P
Sbjct: 12 MKFAGFRVQNFRNILDSGWIEANRITAFVGQNEAGKSNLFEALYVLNP 59


>gi|207092185|ref|ZP_03239972.1| hypothetical protein HpylHP_04145 [Helicobacter pylori
          HPKX_438_AG0C1]
          Length = 381

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ + I  F+ +   ++    +  I  G N VGK+N+LEA+  L  G+ 
Sbjct: 2  IQSVRIKNFKTFKDTQIDGFTKLNIITGGNNVGKSNLLEALYCL-VGKS 49


>gi|120612011|ref|YP_971689.1| SMC domain-containing protein [Acidovorax citrulli AAC00-1]
 gi|120590475|gb|ABM33915.1| SMC domain protein [Acidovorax citrulli AAC00-1]
          Length = 437

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 68/407 (16%), Positives = 134/407 (32%), Gaps = 90/407 (22%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRR 58
           +K++ L+++    +  L + F+   T+  G NGVGK+ +L A++ L            R 
Sbjct: 1   MKLESLSLAHCGGFEQLDIAFEPDVTLIAGVNGVGKSTVLHALTVLLSRAMPEFTPS-RS 59

Query: 59  A----SYADVTRIGSPSFFSTFARVEGMEGLADISI-KLETRDDRSVRCLQINDVVIRVV 113
           A    +  D+   G        AR++    + +  + +L   DD+  R + +        
Sbjct: 60  APLYFTDDDI--HGDKGSLEVSARIQIDGQIINAGVQRLRATDDKGDRFMLLRQAKAATD 117

Query: 114 D-ELNKHLRISWLVPSM----------DRIFSGLS--------MERRRFLDRMVFAIDPR 154
           D +    L    L   +            I    S          +R+   +     +  
Sbjct: 118 DTDFAHALSTRTLTGELEVGIKETRAALAILKNASHPPLAVYFSPKRQLPGQPRSLPEAT 177

Query: 155 HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
                I + R +  R   L E      W  + E    +LG      R ++++AL ++++E
Sbjct: 178 PFYPSIAYGRALHDREVELREFM---HWFRTQE----KLGAANEPRRFKVLDALRAVVVE 230

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM------DSMSRRTLIGP 268
            + +  F ++++     L    D+        Y  +L DG +       D   R  +  P
Sbjct: 231 LLPE--FGNLRIQEQPRLGFVVDKRGQPF---YLHQLSDGERGLLALVFDLTRRLAIANP 285

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
                        I    G                            ++L+DEI  HL  
Sbjct: 286 ESD--------NPIAEGVG----------------------------LVLIDEIELHLHP 309

Query: 329 DKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETA-KFMRISNHQA 372
             +  + + + DI    Q+ +T     V   +     +F+   N + 
Sbjct: 310 KWQRDVLQRLRDIFKACQLVVTTHSPLVLGEVPARCVRFLEFVNGKV 356


>gi|328954594|ref|YP_004371928.1| hypothetical protein Desac_2948 [Desulfobacca acetoxidans DSM
          11109]
 gi|328454918|gb|AEB10747.1| hypothetical protein Desac_2948 [Desulfobacca acetoxidans DSM
          11109]
          Length = 527

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I+ ++I  +  +   R+      T+  G N VGK+ ++EAI            S  +V R
Sbjct: 2  IRTIHIQNYMAHQDTRIELAPGVTVITGPNNVGKSAVVEAIRAAVN-----NPSPKNVIR 56

Query: 67 IGSPSFFST 75
           G+     +
Sbjct: 57 HGAKQAVVS 65


>gi|315606360|ref|ZP_07881376.1| DNA repair protein RecN [Prevotella buccae ATCC 33574]
 gi|315252051|gb|EFU32024.1| DNA repair protein RecN [Prevotella buccae ATCC 33574]
          Length = 554

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 68/206 (33%), Gaps = 24/206 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F      R+ F    ++  G+ G GK+ IL AI  L    +  +  R  +  
Sbjct: 2   LKQLYIKNFTLIDEERIDFGPGFSVITGETGAGKSIILGAIGLLLGNRAGSKAVRAGADR 61

Query: 63  DVTRIGSP----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDEL 116
            V          +    F+  +  E LAD  I+ E       R   IND  +   ++ EL
Sbjct: 62  CVIEAHFDLTNYAMGDFFSCNDIDEDLADTIIRRELSAAGRSRAF-INDTPVSLSLMREL 120

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP--RHRRRMIDFER------LMRG 168
            + L    +      +       +   +D +         +      + +       ++ 
Sbjct: 121 GEQL--VDIHSQHQNLLLQKEDFQLNVVDIIAADGKALDDYHTAYARYRKTETELDALK- 177

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG 194
             R + E   +  +      ++A+  
Sbjct: 178 --RQIEEARTNEEFLRFQYNELAKAA 201


>gi|300718002|ref|YP_003742805.1| recombination and DNA repair protein [Erwinia billingiae Eb661]
 gi|299063838|emb|CAX60958.1| recombination and DNA repair protein [Erwinia billingiae Eb661]
          Length = 553

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQRGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           +G+              PS  +     +  EG   +  ++ + D RS   +    V +  
Sbjct: 57  LGASRADICARFSLKDTPSALTWLVENQLDEGNECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLMR 167
           + +L + L       +   +       ++  LD       +        R      R++ 
Sbjct: 117 LRDLGQLLIQIHGQHAHQLLLK--PEHQKTLLDGYAGETGLMQEMATSYRAWHQSCRVLA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
              +L  E             ++ E  
Sbjct: 175 QHQQLSQEREARRELLQYQLKELNEFA 201


>gi|121705166|ref|XP_001270846.1| cohesin complex subunit  (Psm1), putative [Aspergillus clavatus
          NRRL 1]
 gi|119398992|gb|EAW09420.1| cohesin complex subunit (Psm1), putative [Aspergillus clavatus
          NRRL 1]
          Length = 1260

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R  + 
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTNL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|331679004|ref|ZP_08379676.1| conserved hypothetical protein [Escherichia coli H591]
 gi|331073069|gb|EGI44392.1| conserved hypothetical protein [Escherichia coli H591]
          Length = 566

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 7/86 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + I+ FR+   + +   A+  I VG+N  GK+NIL A++       F  +       
Sbjct: 33  IRRIEITNFRSIQKIVID-SARLQIIVGNNDAGKSNILRALNL------FFNSQTNPGES 85

Query: 67  IGSPSFFSTFARVEGMEGLADISIKL 92
               + ++ +A  +  +   +I IKL
Sbjct: 86  FDFSTDYNIYAAKKYSKKAREIKIKL 111


>gi|313764045|gb|EFS35409.1| DNA repair protein RecN [Propionibacterium acnes HL013PA1]
 gi|313816395|gb|EFS54109.1| DNA repair protein RecN [Propionibacterium acnes HL059PA1]
 gi|313827308|gb|EFS65022.1| DNA repair protein RecN [Propionibacterium acnes HL063PA2]
 gi|314914906|gb|EFS78737.1| DNA repair protein RecN [Propionibacterium acnes HL005PA4]
 gi|314930000|gb|EFS93831.1| DNA repair protein RecN [Propionibacterium acnes HL067PA1]
 gi|314956424|gb|EFT00736.1| DNA repair protein RecN [Propionibacterium acnes HL027PA1]
 gi|314957293|gb|EFT01396.1| DNA repair protein RecN [Propionibacterium acnes HL002PA1]
 gi|314967742|gb|EFT11841.1| DNA repair protein RecN [Propionibacterium acnes HL037PA1]
 gi|315098214|gb|EFT70190.1| DNA repair protein RecN [Propionibacterium acnes HL059PA2]
 gi|315101632|gb|EFT73608.1| DNA repair protein RecN [Propionibacterium acnes HL046PA1]
 gi|327452336|gb|EGE98990.1| DNA repair protein RecN [Propionibacterium acnes HL087PA3]
 gi|327452789|gb|EGE99443.1| DNA repair protein RecN [Propionibacterium acnes HL083PA2]
 gi|328752656|gb|EGF66272.1| DNA repair protein RecN [Propionibacterium acnes HL025PA2]
 gi|328753792|gb|EGF67408.1| DNA repair protein RecN [Propionibacterium acnes HL087PA1]
          Length = 559

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 111/369 (30%), Gaps = 40/369 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L   +  T   G+ G GKT ++  I  L   +     +
Sbjct: 1   MIRSVRIRGLGVID-----ETVLEPSSALTAVTGETGAGKTMVVTGIGLLLGDK-----A 50

Query: 61  YADVTRIGSPSFFS-------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              + R G                RV  + G  +    +  R   S R   +        
Sbjct: 51  DTGLVRHGCDRAVVEAVLDTPDAGRVSELGGTVEDGEVICARHITSRRSRALLGGAQVTA 110

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +L   +     +         +   R+     R     +     RH +   +F R    
Sbjct: 111 SQLAHIVGDQVTIHGQSEQVRLVDAARQLDVVDRAAGDELAGYLSRHAQLWSEF-RAASQ 169

Query: 169 RNRLLTEGYFDSSW-CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIK 225
           R + L E    +      +  +++E+           ++I  ++ L      +E+     
Sbjct: 170 RLQRLNEDRAGAEMEREVLTRRVSEVDAVDPKPHEDDDLIAEMAGLQAAQSIRESLNKAD 229

Query: 226 LSLTGFLDGKFDQSFC-ALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           + L G       Q    AL E+   +L      D    +   R   +    +DL      
Sbjct: 230 VLLNGVETSTGPQPGALALLEQAVHELDGTGDADPHAAELAERARQMSYDLTDLAASVAG 289

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FR 336
            A          Q++  +G  LA  + +          LLD  +A  D  +   L     
Sbjct: 290 HAARAEAD---PQRLEELGGRLAAIQRLLRARTTTLDDLLDSTAA--DRHRLAELDPGAT 344

Query: 337 IVTDIGSQI 345
            +  +G Q+
Sbjct: 345 DLDFLGQQV 353


>gi|190346081|gb|EDK38086.2| hypothetical protein PGUG_02184 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1183

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
           +R+ I  L ++ F++YA  ++   F+A  +  VG NG GK+N+++++ F+   R    R+
Sbjct: 135 SRLVISQLVLTNFKSYAGQQVIGPFNASFSAVVGPNGSGKSNVIDSMLFVFGFRASKMRQ 194

Query: 59  ASYADVTRIGSPSFFSTFARVE 80
              +++    +      F +V+
Sbjct: 195 GKLSELIHNSAGGEKLDFCQVD 216


>gi|6177744|dbj|BAA06453.2| cut14 protein [Schizosaccharomyces pombe]
          Length = 1172

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          +KI+ L I  F++YA   +   +D Q     G NG GK+NIL+AI F   ++     R  
Sbjct: 1  MKIEELIIDGFKSYAVRTVISNWDDQFNAITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60 SYADVT-RIGSPSFFSTFARV 79
          +  D+  + G          +
Sbjct: 61 NLQDLIYKRGQAGITRASVTI 81


>gi|86137668|ref|ZP_01056245.1| DNA repair protein RecN [Roseobacter sp. MED193]
 gi|85826003|gb|EAQ46201.1| DNA repair protein RecN [Roseobacter sp. MED193]
          Length = 548

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRALDIRDLLIIDHLELAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDVVIRV 112
            G+       A  +  EG    +I  +        +   ++N    R 
Sbjct: 57  QGAAQG-EVIAEFDIEEGHPAHAILDEAGLPGGDELVLRRVNTADGRK 103


>gi|326470524|gb|EGD94533.1| DNA repair protein Rad18 [Trichophyton tonsurans CBS 112818]
          Length = 1079

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++    G+     R  S   
Sbjct: 88  IERVDCYNFMCHEHFSVELGPLINFIVGKNGSGKSAILTALTLCLGGKASATNRGQSLKS 147

Query: 64  VTRIGSPSFFSTFARVEGM 82
             + G  S  +   R++  
Sbjct: 148 FVKEGKESA-TIIVRIKNR 165


>gi|269962379|ref|ZP_06176729.1| DNA repair protein RecN [Vibrio harveyi 1DA3]
 gi|269832875|gb|EEZ86984.1| DNA repair protein RecN [Vibrio harveyi 1DA3]
          Length = 554

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----ADAGMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  + L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFLLDNNLHATRWLEDNDLLDGSECILRRIITKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+    ++         +     +  ++
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMK--SEHQMAMLDQYAGHLNLLKSTRSAYQHWRQADNNLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
                  +             ++ EL 
Sbjct: 175 QLKENSQQNQAQKQLLEYQIKELNELS 201


>gi|255038951|ref|YP_003089572.1| DNA repair protein RecN [Dyadobacter fermentans DSM 18053]
 gi|254951707|gb|ACT96407.1| DNA repair protein RecN [Dyadobacter fermentans DSM 18053]
          Length = 551

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 29/212 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +  L I  +     L +  D    I  G+ G GK+ +L AI  L    +  +    +S  
Sbjct: 2   LSNLLIKNYALIKHLEMSPDPGLNIITGETGAGKSIMLGAIGLLLGNRADAKSLYDSSEK 61

Query: 63  DVTRIGSPSFFSTFA-------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            V        F+            E ++   +  ++ E       R   IND  + +  E
Sbjct: 62  CVI----EGTFNLAGYDLAPNFEDENLDFSDECIVRREISAAGKSRAF-INDTPVNL--E 114

Query: 116 LNKHLRISWLV--PSMDRIFSGLSMERRRFLD--------RMVFAID-PRHRRRMIDFER 164
           + + + +  L      D I  G +  + R +D           F  +   +R  +   + 
Sbjct: 115 ILRKIGMQLLDIHSQHDSILLGNNEFQLRVVDAYAENGDLLKAFQANFNAYREALKASDE 174

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           L +  ++L  E  +D      +     + G +
Sbjct: 175 LKKQAHQLRKEFDYDQFLFQELNNAGLKAGEQ 206


>gi|75907930|ref|YP_322226.1| exonuclease SbcC [Anabaena variabilis ATCC 29413]
 gi|75701655|gb|ABA21331.1| Exonuclease SbcC [Anabaena variabilis ATCC 29413]
          Length = 1008

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 83/269 (30%), Gaps = 27/269 (10%)

Query: 9   FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            L +  F +Y    L F   HT    G NG GK+++LEAI++   G   R A   DV   
Sbjct: 5   QLVLKNFLSYRDATLDFRGLHTACICGANGAGKSSLLEAITWALWGES-RAAVEDDVINS 63

Query: 68  GSPSFFSTFA---------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
           G       F           +      A   ++ +       R +    V     D + +
Sbjct: 64  GEKEVRVDFTFQNNQQKYRVIRSRIRGASGILEFQIETPSGFRAITGKGVRA-TQDLILE 122

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           H+++          F   +  R+   D  +       +  + +  + +   + L      
Sbjct: 123 HIKL------DYETFINSAYLRQGRADEFMLKRPSERKEILAELLK-LNQYDELEERAKD 175

Query: 179 DSSWCSSIEAQMAELGVKI---NIARV---EMINALSSLIMEYVQKENFPHIKLSLTGFL 232
            S        ++      I      R         L + I +  Q + F  I+L     +
Sbjct: 176 SSRQFKVRAEELERSLESIKTQLQQRENTKAQRAELEAEINQLQQVQAFETIQLQSLQVI 235

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             +   S   L   + ++ +     DS  
Sbjct: 236 QHQRQNSEQQL--NFVRQQYQNLTQDSDR 262


>gi|41408591|ref|NP_961427.1| hypothetical protein MAP2493c [Mycobacterium avium subsp.
          paratuberculosis K-10]
 gi|41396949|gb|AAS04810.1| hypothetical protein MAP_2493c [Mycobacterium avium subsp.
          paratuberculosis K-10]
          Length = 876

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L   +
Sbjct: 1  MKLHRLTLTNYRGIAHREIEFPDHGVVVVCGANEIGKSSMIEALDLLLEAK 51


>gi|315644210|ref|ZP_07897380.1| SMC-like protein [Paenibacillus vortex V453]
 gi|315280585|gb|EFU43874.1| SMC-like protein [Paenibacillus vortex V453]
          Length = 756

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 6   KIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           ++K + I  FR +++     F   +T+  G NG GKT+  EA+ +   G
Sbjct: 86  QLKKITIENFRGFSNQFFHDFSKPYTLIYGTNGSGKTSFCEALEYSLLG 134


>gi|309811142|ref|ZP_07704939.1| putative nuclease sbcCD subunit C [Dermacoccus sp. Ellin185]
 gi|308434930|gb|EFP58765.1| putative nuclease sbcCD subunit C [Dermacoccus sp. Ellin185]
          Length = 285

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 84/273 (30%), Gaps = 28/273 (10%)

Query: 5   IKIKFLNISEF-----RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           +++  L +  F     R +       D    +  G  G GK+++L+AI+F   G   G R
Sbjct: 1   MRLHSLTLEAFGPFPGREHIDFD-ALDQGILLINGPTGSGKSSLLDAIAFALFGDVPGAR 59

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           ++    +    +  F      +E   G     ++   + +   R  +      R    L 
Sbjct: 60  KSLRQSLRSHHAEPFAEPRVELEFSVGRTRWRVQRTPQWEAPKR--RGTGTTTRQATVLL 117

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM-------IDFERLMRGRN 170
              R      S   + S    E    +   +     +  + +         F R      
Sbjct: 118 SQWR-----DSAWHLVSQRIDEAADMMSDTLGMRLEQFAQVVLLPQGEFAQFLRAKPEDR 172

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM---EYVQKENFPHI--- 224
           R+L E  FD S   ++E    E   +    R   +  + S +    + + + + P     
Sbjct: 173 RILLERLFDVSRFDAVETWFTEAKNQRARERDASLERIRSHLTIVDDALARLDEPLEAPF 232

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            +S+              L E     + +  + 
Sbjct: 233 DVSVDAPSADAVSAGVPELPERLRAVVREVTER 265


>gi|299541748|ref|ZP_07052076.1| ATP-dependent OLD family endonuclease [Lysinibacillus fusiformis
           ZC1]
 gi|298725743|gb|EFI66379.1| ATP-dependent OLD family endonuclease [Lysinibacillus fusiformis
           ZC1]
          Length = 637

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 54/404 (13%), Positives = 122/404 (30%), Gaps = 77/404 (19%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + +  FR+Y    +       + +G N VGKT++L A+  +   RG          R
Sbjct: 5   VKEVRLRNFRSYKFADIKM-PFSGVLIGSNNVGKTSMLYALQVV-FERG---------IR 53

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-----------VVIRVVDE 115
           +     +         E  A I I +E  +D +    + ND                +D+
Sbjct: 54  VSGEDIYIEDGETLTNEKKAYIDILIEPSNDSNETPNEFNDTWFELFGELRSENPETLDQ 113

Query: 116 LNKHLRISWLV----------------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
                 I                    P+ + + +     R R  DR++ +I   +    
Sbjct: 114 FVAIRTIIKFNILKGEYDIERKALIQWPNSEEVENYSDYNRNRITDRLLQSIPVFYLDAK 173

Query: 160 IDFERLMRGRNRLLTEGYFDSSW----CSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
            D    M+ +     +   D        + +E+ + ++  +I      ++  LS  + + 
Sbjct: 174 RDISTEMKDKYSYWGKLVRDVDLTNSSLTQLESSLNDINEQIIDE-SPVLEHLSKNLNKI 232

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
            Q  +    K+ +                          +  D      +    +     
Sbjct: 233 SQTVDTKDSKIIINPV---------------------SRKIRDLNRGMDITFKDQKSEGF 271

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF-----APILLLDEISAHLDEDK 330
              +  +           +  + +  A+                PI+LL+E  AHL    
Sbjct: 272 PISNHGMGTR------SWITFLTLV-AYIEWKIQKMKEDNIPYHPIILLEEPEAHLHPQA 324

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
           +  +++ +  I  Q  ++     +  +  E    + +S  + + 
Sbjct: 325 QRKIYKQIQKIDGQKIVSS-HSPIIVAQAELENIIHVSKLEGVS 367


>gi|296138945|ref|YP_003646188.1| SMC domain protein [Tsukamurella paurometabola DSM 20162]
 gi|296027079|gb|ADG77849.1| SMC domain protein [Tsukamurella paurometabola DSM 20162]
          Length = 877

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFL----SPGRGFRR 58
          +++  L + +FR      + F     T+  G N  GK++++EA+  L    +  +  R 
Sbjct: 1  MRLHRLAVKDFRGVEQREIDFAETGVTLLHGPNEAGKSSMVEALQLLLDVKATSKSQRV 59



 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 20/197 (10%)

Query: 183 CSSIEAQMAELGVKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
            + + AQ+          R++     L          E        L   L    D    
Sbjct: 688 LAGLAAQLQLFQADGRRDRLDAAESELVHAERALASVEERARAAALLHDTLTAHRDARRA 747

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIG-----PHRSDLIV---DYCDKAITIAHGSTGEQK 293
            ++  Y + L +         RT+ G         DL +         +     S G Q+
Sbjct: 748 RVQAPYQRALEE-------LGRTVFGDPLTITVGDDLTIASRTVDGVTVPFESLSGGAQE 800

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTD 351
            + V   LA ARL+    G   I   D+   H D  + +A+   +   G  +Q+ +    
Sbjct: 801 QLGVLSRLACARLVDGVDGAPVIF--DDALGHSDPTRLSAMADALVAAGESAQVIVFSCV 858

Query: 352 KSVFDSLNETAKFMRIS 368
              FD+L        +S
Sbjct: 859 PGRFDALRGRPGVTEVS 875


>gi|258592175|emb|CBE68484.1| putative Chromosome partition protein smc [NC10 bacterium 'Dutch
           sediment']
          Length = 1199

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 68/204 (33%), Gaps = 32/204 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  L    F+++A  + + F+   T  VG NG GK+N+ +AI +    +     R   
Sbjct: 1   MRLLRLTAFGFKSFAEKVEVTFEPGVTAIVGPNGCGKSNLSDAIRWALGEQSAKLLRGDR 60

Query: 61  YADVTRIGS--------PSFFSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
             D+   G+              F    G        + +  R  RS      +N V  R
Sbjct: 61  MDDLIFAGNSVRKPLGMAEVSLIFTDNYGNIPTEFHEVTVTRRLYRSGESEYLLNHVPCR 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + D         L           S+  I S    ERR  ++             ++ ++
Sbjct: 121 LRDITDLFLDTGLGGEPYALIEQGSIGSIVSAKPAERRLLIEE---------AAGIMTYK 171

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIE 187
             +R R+ L      + +     +
Sbjct: 172 --VRKRSALAKLEAAEQNLLRVSD 193


>gi|254804335|ref|YP_003082556.1| putative ATP/GTP-binding protein [Neisseria meningitidis alpha14]
 gi|254667877|emb|CBA03964.1| putative ATP/GTP-binding protein [Neisseria meningitidis alpha14]
          Length = 586

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 112/360 (31%), Gaps = 55/360 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + ++   I  FR+  ++ + F      +  G+N +GKTN L A++       F      +
Sbjct: 1   MILRKFQIKNFRSLINVNVKFIDNLPIVISGENNIGKTNFLRALNVY-----FNHIHDKN 55

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +    +      +    G     ++  + E         ++ +          +K +   
Sbjct: 56  LYHAETDIPHHIYYGSRGGRTKTELIGEFENHGKIIKLLVRFDAKGNSSYKLDSKDIN-- 113

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
                 ++ F  LS  +  F++     + P     +++ + L+     L  +    S   
Sbjct: 114 -----DNKAFEFLSEFKFIFIESHNIHL-PSLIGAILEKDGLL----ALDKKRTKQSRPL 163

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +E         I+++R   I  + + I    +          LT F     +      
Sbjct: 164 EKLEE-------FIDLSRQA-ITDIENDINHCFK---------ELTDFDGILKEAKILIN 206

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             E+       R  D +   T I            +     + GS G Q+ V + +    
Sbjct: 207 FAEF------DRLRDVIRTMTSITLQ-------DGNNHEIESKGS-GAQRAVFLSLM--- 249

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNE 360
             +  N      I  +DE  A L    +  +F  +  +     Q  +  T    F +L  
Sbjct: 250 KYISKNIKNKKIIWAIDEPEAFLQPKLQRKVFETLQSMCKEDKQTIILTTHSQHFINLRN 309


>gi|229115357|ref|ZP_04244765.1| hypothetical protein bcere0017_16520 [Bacillus cereus Rock1-3]
 gi|228668077|gb|EEL23511.1| hypothetical protein bcere0017_16520 [Bacillus cereus Rock1-3]
          Length = 697

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 5  IKIKFLNISEFR-------NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + +K + I  FR       N   L+L F     + +G+N  GK+ I++AI F      
Sbjct: 1  MFLKEIKIWNFRKFGEGEANSPGLQLEFHKNFNLLIGENDSGKSAIIDAIHFTLGTVS 58


>gi|167770730|ref|ZP_02442783.1| hypothetical protein ANACOL_02076 [Anaerotruncus colihominis DSM
           17241]
 gi|167667325|gb|EDS11455.1| hypothetical protein ANACOL_02076 [Anaerotruncus colihominis DSM
           17241]
          Length = 557

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 27/205 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I      +   + F     +F G+ G GKT ++ AI+ +    G R +    + R
Sbjct: 2   LSQLYIKNVAVISEATIDFSQGLNVFTGETGAGKTILISAINAVL---GERASKD--MIR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD-------------ISIKLETRDDRSVRCLQINDVVI--R 111
            G      +    E     AD             + I  E   D      +IN       
Sbjct: 57  TGESHAVISALFTELSSDAADALSQAGYAPDDDTVLIMRELSADGKS-SCRINGRPATLA 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP---RHRRRMIDFERLMRG 168
           ++  ++ HL          ++      +   F+D    A+DP   ++R     +    R 
Sbjct: 116 ILKAVSAHLINVHGQHDNQQLL--SPGKHLGFID-GFGALDPLLEQYRTAYERYTDAKRE 172

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL 193
            N + T+    +     +  Q++E+
Sbjct: 173 LNEIDTDEAGKARRLDLLTYQVSEI 197


>gi|123471672|ref|XP_001319034.1| SMC flexible hinge domain protein [Trichomonas vaginalis G3]
 gi|121901808|gb|EAY06811.1| SMC flexible hinge domain protein, putative [Trichomonas
          vaginalis G3]
          Length = 1169

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF 49
          + I+ + +S F++Y    +V  FD       G NG GK+N+L+AI F
Sbjct: 1  MYIERIILSGFKSYRDHTVVDGFDPYFNAITGLNGSGKSNVLDAICF 47



 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)

Query: 266  IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
             G    D IV        +   S G++ ++ +G+ LA  +        API +LDE+ A 
Sbjct: 1058 HGVRGFDFIVRLNGLQKGLQELSGGQRALIALGLVLALLKF-----NPAPIYILDEVDAA 1112

Query: 326  LDEDKRNALFRIVTD--IGSQIFM 347
            LD  +   + R++      SQ  +
Sbjct: 1113 LDLSRTQDIGRLLKSQFKASQFIV 1136


>gi|25027822|ref|NP_737876.1| hypothetical protein CE1266 [Corynebacterium efficiens YS-314]
 gi|259506212|ref|ZP_05749114.1| ATPase involved in DNA repair [Corynebacterium efficiens YS-314]
 gi|23493105|dbj|BAC18076.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
 gi|259166189|gb|EEW50743.1| ATPase involved in DNA repair [Corynebacterium efficiens YS-314]
          Length = 878

 Score = 50.3 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++I  + I  FR    L L    ++   +  GDN  GK++ILEAI  +   +
Sbjct: 1  MRIHAITIDNFRAIEHLELKDIPESGVIVIHGDNEKGKSSILEAIQIVLTEK 52


>gi|190892572|ref|YP_001979114.1| DNA repair protein [Rhizobium etli CIAT 652]
 gi|190697851|gb|ACE91936.1| DNA repair protein [Rhizobium etli CIAT 652]
          Length = 557

 Score = 50.3 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 99/299 (33%), Gaps = 43/299 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F+   ++  G+ G GK+ +L+++S    GRG        + R
Sbjct: 2   LIQLSIRDIVLIERLDLAFETGLSVLTGETGAGKSILLDSLSLALGGRG-----DGGLVR 56

Query: 67  IGS-------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G                      R  G++   D+  + +   D   +    +  V   +
Sbjct: 57  HGEDKGQVTAVFDVGTDHGARALLRENGIDDEGDLIFRRQQSADGRTKAYVNDQPVSVQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRG 168
                 + +       DR     +   R  LD      D      R  R   D ER ++ 
Sbjct: 117 MRQAGQMLVEIHGQHDDRALV-DTNAHRTLLDAFAGLTDEVSEVARLYRLWRDSERTLKK 175

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMI--NALSSLIMEYVQ--- 217
               +     ++ +  S   ++ +L        ++  +R +M+    ++  I E  +   
Sbjct: 176 HREKVESAAREADYLRSSVDELQKLSPQDGEEEELAESRQKMMKAERIAGDIAEASEFLN 235

Query: 218 --KENFPHI-----KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR-KMDSMSRRTLIGP 268
                 PHI     +L           +    L +    +L + + ++++  R+T   P
Sbjct: 236 GNASPVPHIASLVRRLERKSHEAPGLLEDTVTLLDAALDQLSNAQMEVEAALRKTEYDP 294


>gi|256005357|ref|ZP_05430322.1| SMC domain protein [Clostridium thermocellum DSM 2360]
 gi|255990676|gb|EEU00793.1| SMC domain protein [Clostridium thermocellum DSM 2360]
 gi|316940302|gb|ADU74336.1| Rad50 zinc hook domain protein [Clostridium thermocellum DSM
          1313]
          Length = 483

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          IK + I  F+++    L F     + VG +  GK+ I+ AI ++            D  R
Sbjct: 4  IKRIRIENFQSHKDTELSFSDGLNVIVGPSDQGKSAIIRAIKWVLYNE----PRGTDFIR 59

Query: 67 IGSPSF 72
           G+ S 
Sbjct: 60 QGTNSA 65


>gi|190348158|gb|EDK40565.2| hypothetical protein PGUG_04663 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1210

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F+ Y +  ++      H + VG NG GK+N   AI   LS          
Sbjct: 1   MHIKRIVIQGFKTYKNATVIDLLSPHHNVVVGRNGSGKSNFFAAIRFVLSDAYTHMEREE 60

Query: 62  AD-VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
              +   G+ +  S +  +        + I  +    R    L+ +D
Sbjct: 61  RQGLIHEGNGTVMSAYVEIIFDNTDRRLPISKDEVAVRRTIGLKKDD 107



 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 279  DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            D+   I   S G++ +  + + LA           AP  L DEI A+LD   R A+  ++
Sbjct: 1102 DEQQRIEQLSGGQKSLCAIALILA-----IQKCDPAPFYLFDEIDANLDTQYRTAVASMI 1156

Query: 339  T--DIGSQIFMTGTDKSVFDSLNETAKFMRI 367
                 G+Q   T       + L    KF  I
Sbjct: 1157 NVLSKGAQFICTT---FRPEMLQVADKFFGI 1184


>gi|319950446|ref|ZP_08024361.1| chromosome partition protein [Dietzia cinnamea P4]
 gi|319435910|gb|EFV91115.1| chromosome partition protein [Dietzia cinnamea P4]
          Length = 226

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 26/220 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + +  L + +FR      +  +     +  G N  GKT++++A+  L      + +S   
Sbjct: 1   MILHRLMLEDFRGVVREEVELEPRGVLVIEGPNESGKTSLMDALEMLLE---HKASSGRA 57

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC------------------LQI 105
             +  SP        VE    +    ++      R  R                     +
Sbjct: 58  EIKAASPVGRDVPVVVEAEFTVDGQRMRYRKEFVRGKRTSLEFPGSTRPALSGDDAHDHV 117

Query: 106 NDVVIRVVDE-LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
            D++ R VD  L K LRI+   P      +      RR LD      DP     ++D  R
Sbjct: 118 RDLLDRQVDRSLWKALRIAQDEPLGQVDAAKGMGSLRRALDAAAGGEDPSGDDSLMD--R 175

Query: 165 LMRGRNRLLTEGYFDSS-WCSSIEAQMAELGVKINIARVE 203
           +   RNR LT    + +   +  E ++AE    ++ AR  
Sbjct: 176 VAEERNRYLTARRGEPTGELARSETRLAEARAALSEARAR 215


>gi|302776058|ref|XP_002971325.1| hypothetical protein SELMODRAFT_60332 [Selaginella
          moellendorffii]
 gi|300161307|gb|EFJ27923.1| hypothetical protein SELMODRAFT_60332 [Selaginella
          moellendorffii]
          Length = 1038

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
          I  + +  F  +++L + F        G NG GK+ IL A+      R     R  S  D
Sbjct: 4  IARIRVENFMCHSNLSIDFVDNVNFITGQNGSGKSAILTALCIAFGIRARGTQRATSLKD 63

Query: 64 VTRIGSPSFFSTF 76
            + G        
Sbjct: 64 FIKTGCSYALVIV 76


>gi|303280275|ref|XP_003059430.1| condensin complex component [Micromonas pusilla CCMP1545]
 gi|226459266|gb|EEH56562.1| condensin complex component [Micromonas pusilla CCMP1545]
          Length = 1265

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRA 59
           R+ IK + +  F++YA  +    F    +  VG NG GK+N+++A+ F+     +  R  
Sbjct: 14  RLVIKKMVLENFKSYAGAQHVGPFHKSFSSVVGPNGSGKSNVIDAMLFVFGKRAKQLRLN 73

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLA 86
             +++    +      +ARVE      
Sbjct: 74  KVSELIHNSTDFRNLEYARVEVHFHEI 100


>gi|119963147|ref|YP_949198.1| hypothetical protein AAur_3505 [Arthrobacter aurescens TC1]
 gi|119950006|gb|ABM08917.1| hypothetical protein AAur_3505 [Arthrobacter aurescens TC1]
          Length = 478

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
            +  L +  +R ++ + +VF  + TI  G NG GKT +L
Sbjct: 90  AVSQLTVHNWRQFSDIDIVFHPRLTILTGANGAGKTTLL 128


>gi|119485389|ref|ZP_01619717.1| DNA repair protein RecN [Lyngbya sp. PCC 8106]
 gi|119457145|gb|EAW38271.1| DNA repair protein RecN [Lyngbya sp. PCC 8106]
          Length = 576

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 62/197 (31%), Gaps = 21/197 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L L       +F G+ G GK+ IL+AI  +  G+         V R
Sbjct: 2   LLSLRIDNFALVDHLDLELGLGLNVFTGETGAGKSIILDAIDAVLGGK-----VDRRVIR 56

Query: 67  IGSPSFF-STFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNKHL-- 120
            G+          VE +        +++  D       R + ++   +R    LN  L  
Sbjct: 57  TGAKRAILEATFEVEPLISSWLAEQEIDLVDGTLAVCSREITLSAGKLRTRSRLNGILIS 116

Query: 121 ---------RISWLVPSMDRIFSGLSMERRRFLDR-MVFAIDPRHRRRMIDFERLMRGRN 170
                    R   +      +       +R +LD      +    +     + +  + +N
Sbjct: 117 RKLLDEVRDRFVEITAQGQTLQLSQPGLQREWLDLYGGTDLIVAKQSVATAYTQAKQAQN 176

Query: 171 RLLTEGYFDSSWCSSIE 187
            L     F+      ++
Sbjct: 177 ILENRRQFEQQRLQRLD 193


>gi|254253175|ref|ZP_04946493.1| ATPase involved in DNA repair [Burkholderia dolosa AUO158]
 gi|124895784|gb|EAY69664.1| ATPase involved in DNA repair [Burkholderia dolosa AUO158]
          Length = 549

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 92/252 (36%), Gaps = 30/252 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G            +      ++     A+ ++ L    D + R    IN     +  + 
Sbjct: 57  TGCSRADITAEFTPYDRVARWLDEHAFDAEDTVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 ELGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAD--AANVARAWRVWRDATQAID 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+ ++ +  H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQPGEW-EEVSAEHKRLSHSANLID 223

Query: 235 KFDQSFCALKEE 246
               +  AL E 
Sbjct: 224 GVQGALNALSEA 235


>gi|328769187|gb|EGF79231.1| hypothetical protein BATDEDRAFT_89546 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 1142

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + ++ F  Y+++         + VG NG GK+ ++ AI+    GR     R     D
Sbjct: 111 IVRIKLTNFLTYSAVEFYPGPNLNMVVGPNGTGKSTVVCAIALGLCGRPDVLGRARELQD 170

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
             + G          +E       + I        +    +IN +  +
Sbjct: 171 FVKHGEN---KAIVEIELKVTGKKLVITRTFERGSNQSSWKINGLSAK 215


>gi|325126071|gb|ADY85401.1| DNA repair protein [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 562

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 72/211 (34%), Gaps = 34/211 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  Q T+ +G+ G GK+ +++A+S L    G R     ++ R
Sbjct: 2   LVELDIQNFAIIKSLKIKFQPQMTVLIGETGAGKSILIDALSLLL---GHRAQK--ELVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADIS---------------IKLETRDDRSVRCLQINDV--V 109
            G      T       E + ++                I       +    ++IN     
Sbjct: 57  SGQSKAVVTGLFTLQDEEMREVEQIAADYGLPMDGDDLIISREISSKGRNVIRINGQLTT 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE------ 163
           I  + ++ ++L           +         R +D +        +  +  ++      
Sbjct: 117 ITALAKIGEYLVDIHGQNDQQMLMDQS-----RQIDLVDEYAGKDFKSLLGKYQAEYQTW 171

Query: 164 RLMRGRNRLLTEGYFDSSW-CSSIEAQMAEL 193
           + +  R   L     + +     ++ Q+ EL
Sbjct: 172 QSLNQRLEHLRRDSRELAQRQDILQFQVEEL 202


>gi|312077872|ref|XP_003141492.1| hypothetical protein LOAG_05905 [Loa loa]
 gi|307763345|gb|EFO22579.1| hypothetical protein LOAG_05905 [Loa loa]
          Length = 1038

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 79/253 (31%), Gaps = 29/253 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           I  +    F  Y  + +       + VG NG GK+ I+  +  L+ G       R    A
Sbjct: 21  ITQIIFENFLTYEHVEMFPGPNLNVIVGPNGTGKSTIMCGLC-LAVGGTPNLLGRSELLA 79

Query: 63  DVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           D  + GS       F R    E    +SI L  R   S   +    V    + ++ +   
Sbjct: 80  DYIKHGSEKGSVKVFIRDSKREKDRVLSIVLH-RPGSSHYFVDGEKVTQAKLRDVAESYN 138

Query: 122 ISWLVPSMD----------------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
           I    P                    + +      ++ ++        R+    + + + 
Sbjct: 139 IQIDNPCTFLAQDKVKSFAEQKPYVLLKNTEKAVGKKLIELHQNIRHIRYDESPVSYTKY 198

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +    RLL     +      +         +    R+ ++     L ++ +Q E   H +
Sbjct: 199 LE---RLLNSVQSELKTLVPLTENYRR--RETMRERIRLLQC-KQLYLKCLQAEVIAHER 252

Query: 226 LSLTGFLDGKFDQ 238
           +      +G+ ++
Sbjct: 253 IKYKRVKEGELEE 265


>gi|285019397|ref|YP_003377108.1| hypothetical protein XALc_2636 [Xanthomonas albilineans GPE PC73]
 gi|283474615|emb|CBA17114.1| hypothetical protein XALc_2636 [Xanthomonas albilineans]
          Length = 616

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 125/377 (33%), Gaps = 44/377 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP-GRGFR----R 58
           +K+  + +  FR Y    R+  D   T F+G N  GK+ ILEA+      G+  R     
Sbjct: 1   MKLSAVILENFRGYSQRTRIEIDD-LTAFIGKNDAGKSTILEALDIFFNDGKPERGDACV 59

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            S   + RIG  +F S    +  ++  A  S+  E   +       I +          +
Sbjct: 60  HSTDTMIRIGC-AFASLPTEI-VLDAAAHTSLAAEHLLNEKGELEIIKEWD-SSAKTPKE 116

Query: 119 HLRISWLVP------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER-----LMR 167
            +    + P       +  + +     R + L      +       M    R     L  
Sbjct: 117 SVFAIAMHPTNADATDLLTLKNSDLKARVKKLGIDESTVSLAINGSMRQAIREACHPLTL 176

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            R  L  +          +  Q+    +  +       +  S    E VQ      I  +
Sbjct: 177 ERKSLPLDKEDAKKVWEQLRPQLPMYALFRS-------DRPSQDGDEEVQSPLKFAITQA 229

Query: 228 LTGFLDG--KFDQSFCALKEEYAKK-LFDGRKMDSMSRRTLIGPHRSD------LIVDYC 278
           L    D   K + +     E+ AK+ L    +MD      L    ++D            
Sbjct: 230 LKELADDLKKIEDAVRLRAEDVAKRTLAKLNEMDGRLASELKPFFKADPKWDVFKFGLVG 289

Query: 279 DKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFR 336
           D  I I   GS G ++++L+  F A A       G  + I  ++E       D +  L +
Sbjct: 290 DNDIPINKRGS-GVRRLILLNFFRAEAERRRTEKGALSVIYAIEEPETSQHPDNQRLLVQ 348

Query: 337 IVTDI----GSQIFMTG 349
            + ++     +Q+ +T 
Sbjct: 349 ALKELAIDENTQVLVTS 365


>gi|322419814|ref|YP_004199037.1| DNA repair protein RecN [Geobacter sp. M18]
 gi|320126201|gb|ADW13761.1| DNA repair protein RecN [Geobacter sp. M18]
          Length = 553

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I+       L + F     I  G+ G GK+ I++A++ +  GRG      AD+ R
Sbjct: 2  LRELQITNLAIIDKLHVEFSPGLNILTGETGAGKSIIIDAVNLILGGRG-----SADLIR 56

Query: 67 IGSPSFFSTFA 77
           G+        
Sbjct: 57 SGAKEASVEAV 67


>gi|253744802|gb|EET00952.1| SMC6 protein [Giardia intestinalis ATCC 50581]
          Length = 1302

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          I  L+I+ F  +    + F+   ++  G NG GK++IL+AI F+  G+
Sbjct: 45 ILRLHITNFLTHRDKVVDFECPVSLIHGPNGAGKSSILQAIHFVLCGK 92


>gi|223040583|ref|ZP_03610854.1| SMC domain protein [Campylobacter rectus RM3267]
 gi|222878131|gb|EEF13241.1| SMC domain protein [Campylobacter rectus RM3267]
          Length = 428

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 55/379 (14%), Positives = 117/379 (30%), Gaps = 57/379 (15%)

Query: 4   RIKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           ++ I+ ++I    ++ +  +     +  + VG NG GK+N +EAIS L    G+  +   
Sbjct: 39  KMLIESISIKNLLSFNNEGISLRLNKFNVLVGSNGCGKSNFIEAISLLQSAPGYLASPVK 98

Query: 63  D---VTRI----GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
           D   +        +         ++      DI I+     + +     + D  I     
Sbjct: 99  DNGGIITWLYRGETKPTAYIEVVLDIKGAKHDIPIRHHIAFNETGNKFDLQDESIEDSRS 158

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR------ 169
                                S +R  F  R  F  +           +L   R      
Sbjct: 159 Y------------------DGSKDRPYFYYR--FRHNHPLLNVKGKERKL--QRVDIDPE 196

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS---SLIMEYVQKENFPHIKL 226
             +L++      +      Q+++   KI I R       +      M  ++ +       
Sbjct: 197 QSILSQIKDPDQYPEI--TQISKEYQKIRIYREWTFGRYAMPRQPQMADMRNDYLEENYR 254

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA--ITI 284
           +L   L+          K     +    R  D      + G   + + + + +K   I  
Sbjct: 255 NLGLILNKISAHPLLKKKLLEKLRALYPRFED--YGVIIEG---ATVQIFFNEKNYSIPA 309

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-- 342
              S G  + + +   L              +L ++E    L  D    + + + ++   
Sbjct: 310 TRLSDGTLRYLSLLAVL-------YNPYKPSLLCIEEPELGLHPDVLPIVAQTLKEVSED 362

Query: 343 SQIFMTGTDKSVFDSLNET 361
            QI +T     + D+L ++
Sbjct: 363 VQIVVTTHSDEIIDALTDS 381


>gi|71737437|ref|YP_275227.1| ATP binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71557990|gb|AAZ37201.1| ATP binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|320323728|gb|EFW79812.1| ATP binding protein [Pseudomonas syringae pv. glycinea str. B076]
          Length = 452

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 62/385 (16%), Positives = 124/385 (32%), Gaps = 77/385 (20%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAI-----SFLSPG 53
           ++IK   +     ++ L +          + T+ VG+NG GKT +L+++       ++  
Sbjct: 1   MEIKSFRLVNVGRFSDLEVALAPTERHASKVTVLVGNNGAGKTTLLKSVATSLSWLVARV 60

Query: 54  RGFRRA---SYADVTRIGSPSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQIN 106
           R  + A       + + G+ +  S   R+E +    + +  +  +      R  R    N
Sbjct: 61  RTPKGAGSRIDEGMVQNGTAT-SSITIRIEDVLISDDEINPLETEWGITATRKGR----N 115

Query: 107 DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF--ER 164
                V+ ELN+                     R +  ++   +        +  +  ER
Sbjct: 116 ATSSTVLSELNRL----------------ADGYRSKLTEKSDTS-----LPLLAFYPVER 154

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +      +            ++     LG  ++  R            E    EN   I
Sbjct: 155 SVIE----IPLKVHARHTFDQLDGYDNALGRGVDFRR------FFEWFREREDSENETGI 204

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT---LIGPH----------RS 271
            + L   L  K       L +   ++    R     + RT      P           R 
Sbjct: 205 SIELLNELSQKILID-TELWKVLTREHASSRDRQLTAVRTAVEAFMPGFTKLRVKRKPRL 263

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEISAHL 326
            + +D   K + ++  S GE+ ++ +       LA     + N      I+L+DE+  HL
Sbjct: 264 HMAIDKDGKTLNVSQLSQGEKSMMALVGDIARRLAMMNPALENPLHGNGIVLIDEVDLHL 323

Query: 327 DEDKRNALFRIVTDI--GSQIFMTG 349
               + +L   +T      Q  +T 
Sbjct: 324 HPKWQRSLIAQLTITFPNCQFLLTT 348


>gi|256957076|ref|ZP_05561247.1| DNA repair protein RecN [Enterococcus faecalis DS5]
 gi|257077872|ref|ZP_05572233.1| DNA repair protein RecN [Enterococcus faecalis JH1]
 gi|256947572|gb|EEU64204.1| DNA repair protein RecN [Enterococcus faecalis DS5]
 gi|256985902|gb|EEU73204.1| DNA repair protein RecN [Enterococcus faecalis JH1]
          Length = 560

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 98/266 (36%), Gaps = 33/266 (12%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           N++ ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +
Sbjct: 2   NKM-LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SS 55

Query: 63  DVTRIGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQIND 107
           D  R G+        FS     E  + L ++ I+ E          +   ++V  +    
Sbjct: 56  DYIRQGANKCTLEGLFSMPKSQELKKLLEELGIETEEDSLVIQRDISASGKNVCRVNGRI 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDF 162
           V I  +  + ++L           +      ER       F  + + A+  ++ +   ++
Sbjct: 116 VNITNLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEY 172

Query: 163 ERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             L   +R R +   E             ++A     +     +++   + L       +
Sbjct: 173 RALEAKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIAD 231

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKE 245
                  +L G  D   D+   ++ E
Sbjct: 232 ALTISYAALNGEDDSSLDKIGTSMNE 257


>gi|261205002|ref|XP_002627238.1| cohesin complex subunit [Ajellomyces dermatitidis SLH14081]
 gi|239592297|gb|EEQ74878.1| cohesin complex subunit [Ajellomyces dermatitidis SLH14081]
          Length = 1260

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAFFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|182890078|gb|AAI65249.1| Smc3 protein [Danio rerio]
          Length = 1216

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTVVDPFGSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEDEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  S+R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSSKRETCG 250



 Score = 36.4 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QI 345
            S G++ +V + +  A           AP  L DEI   LD   R A   ++ ++    Q 
Sbjct: 1115 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAASDMIMELAGHAQF 1169

Query: 346  FMTGTDKSVFDS 357
              T     + +S
Sbjct: 1170 ITTTFRPELLES 1181


>gi|73670173|ref|YP_306188.1| hypothetical protein Mbar_A2704 [Methanosarcina barkeri str.
          Fusaro]
 gi|72397335|gb|AAZ71608.1| hypothetical protein Mbar_A2704 [Methanosarcina barkeri str.
          Fusaro]
          Length = 581

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          IK L +  FR Y    + F  Q+TI VG+N  GK+ I+EA+  +S    
Sbjct: 2  IKELQLINFRCYRKHSIPF-KQNTIIVGENNAGKSTIIEALRIVSIIAS 49


>gi|327439336|dbj|BAK15701.1| uncharacterized conserved protein [Solibacillus silvestris StLB046]
          Length = 436

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 4/94 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I   N+  ++ Y           T+  G N  GK++ L+A+  L+  +      +  V  
Sbjct: 2   INSFNVRNYKCYDESSYFDLPGLTLVSGTNNSGKSSFLQALYLLAQNKS----RHFPVLT 57

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
           +       +F+R+     L    I+L    D++V
Sbjct: 58  LNEELNLGSFSRILNKNALNTDGIELGYSVDKAV 91


>gi|304395564|ref|ZP_07377447.1| SMC domain protein [Pantoea sp. aB]
 gi|304356858|gb|EFM21222.1| SMC domain protein [Pantoea sp. aB]
          Length = 368

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I+ + I  FR+  +L L    Q  +  G NG GK+N+ +A+  L
Sbjct: 1  MAIEQIQIRGFRSIRNLTLSLQ-QLNVVSGPNGCGKSNLYKAVRLL 45


>gi|108799563|ref|YP_639760.1| hypothetical protein Mmcs_2596 [Mycobacterium sp. MCS]
 gi|119868673|ref|YP_938625.1| hypothetical protein Mkms_2640 [Mycobacterium sp. KMS]
 gi|108769982|gb|ABG08704.1| hypothetical protein Mmcs_2596 [Mycobacterium sp. MCS]
 gi|119694762|gb|ABL91835.1| conserved hypothetical protein [Mycobacterium sp. KMS]
          Length = 887

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/186 (18%), Positives = 68/186 (36%), Gaps = 18/186 (9%)

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  + + L E    +    S     A +       R+ ++      ++  V         
Sbjct: 549 LTEKKKELVELEASAELTKSWTQIEALVRDAKQADRLTLLAKPMPGLLRAVTGLAKTASD 608

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
             +    D  F++   AL+    +  F GR+  +  R+ L G H+               
Sbjct: 609 QMINESFDALFNEECIALRAPALRVEFVGRQGRAQRRKVLNGKHK------------PST 656

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--S 343
             S GEQKV+ +  FLA ARL     G    ++ D+  + LD  + N + + +  +   +
Sbjct: 657 VLSEGEQKVLAMADFLAEARL----AGITAPVIFDDPVSSLDHRRINEVAQRIAALAETT 712

Query: 344 QIFMTG 349
           Q+ +  
Sbjct: 713 QVIVFT 718


>gi|50549059|ref|XP_502000.1| YALI0C19129p [Yarrowia lipolytica]
 gi|49647867|emb|CAG82320.1| YALI0C19129p [Yarrowia lipolytica]
          Length = 1606

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 2   TNRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
           T R+ I  L ++ F++YA    +  F +  +  VG NG GK+N+++++ F+   R    R
Sbjct: 313 TQRLTISNLVLTNFKSYAGRQEVGPFHSSFSAVVGPNGSGKSNVIDSLLFVFGFRASKMR 372

Query: 58  RASYADVTRIGSPSFFSTFARVE 80
           +   + +    S     TF  VE
Sbjct: 373 QGKLSALIHNSSNHPNLTFCSVE 395


>gi|289425191|ref|ZP_06426968.1| DNA repair protein RecN [Propionibacterium acnes SK187]
 gi|289154169|gb|EFD02857.1| DNA repair protein RecN [Propionibacterium acnes SK187]
 gi|313792440|gb|EFS40533.1| DNA repair protein RecN [Propionibacterium acnes HL110PA1]
 gi|313801515|gb|EFS42764.1| DNA repair protein RecN [Propionibacterium acnes HL110PA2]
 gi|313838276|gb|EFS75990.1| DNA repair protein RecN [Propionibacterium acnes HL086PA1]
 gi|314963134|gb|EFT07234.1| DNA repair protein RecN [Propionibacterium acnes HL082PA1]
 gi|315078197|gb|EFT50240.1| DNA repair protein RecN [Propionibacterium acnes HL053PA2]
 gi|327453541|gb|EGF00196.1| DNA repair protein RecN [Propionibacterium acnes HL092PA1]
          Length = 559

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 111/369 (30%), Gaps = 40/369 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L   +  T   G+ G GKT ++  I  L   +     +
Sbjct: 1   MIRSVRIRGLGVID-----ETVLEPSSALTAVTGETGAGKTMVVTGIGLLLGDK-----A 50

Query: 61  YADVTRIGSPSFFS-------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              + R G                RV  + G  +    +  R   S R   +        
Sbjct: 51  DTGLVRHGCDRAVVEAVLDTPDAGRVSELGGTVEDGEVICARHITSRRSRALLGGAQVTA 110

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +L   +     +         +   R+     R     +     RH +   +F R    
Sbjct: 111 SQLAHIVGDQVTIHGQSEQVRLVDAARQLDVVDRAAGDELAGYLSRHAQLWSEF-RAASQ 169

Query: 169 RNRLLTEGYFDSSW-CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIK 225
           R + L E    +      +  +++E+           ++I  ++ L      +E+     
Sbjct: 170 RLQRLNEDRAGAEMEREVLTRRVSEVDAVDPKPHEDDDLIAEMAGLQAAQSIRESLNKAD 229

Query: 226 LSLTGFLDGKFDQSFC-ALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           + L G       Q    AL E+   +L      D    +   R   +    +DL      
Sbjct: 230 VLLNGVETSTGPQPGALALLEQAVHELDGTGDADPHAAELAERARQMSYDLTDLAASVAG 289

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FR 336
            A          Q++  +G  LA  + +          LLD  +A  D  +   L     
Sbjct: 290 HAARAEAD---PQRLEELGGRLAAIQRLLRARTTTLDDLLDSTAA--DRHRLAELDPGAT 344

Query: 337 IVTDIGSQI 345
            +  +G Q+
Sbjct: 345 DLDFLGQQV 353


>gi|104774284|ref|YP_619264.1| RecN, ATPase involved in DNA repair [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103423365|emb|CAI98221.1| RecN, ATPase involved in DNA repair [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 562

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 72/211 (34%), Gaps = 34/211 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  Q T+ +G+ G GK+ +++A+S L    G R     ++ R
Sbjct: 2   LVELDIQNFAIIKSLKIKFQPQMTVLIGETGAGKSILIDALSLLL---GHRAQK--ELVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADIS---------------IKLETRDDRSVRCLQINDV--V 109
            G      T       E + ++                I       +    ++IN     
Sbjct: 57  SGQSKAVVTGLFTLQDEEMREVEQIAADYGLPMDGDDLIISREISSKGRNVIRINGQLTT 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE------ 163
           I  + ++ ++L           +         R +D +        +  +  ++      
Sbjct: 117 ITALAKIGEYLVDIHGQNDQQMLMDQS-----RQIDLVDEYAGKDFKSLLGKYQAEYQTW 171

Query: 164 RLMRGRNRLLTEGYFDSSW-CSSIEAQMAEL 193
           + +  R   L     + +     ++ Q+ EL
Sbjct: 172 QSLNQRLEHLRRDSRELAQRQDILQFQVEEL 202


>gi|57639954|ref|YP_182432.1| ABC transporter ATPase [Thermococcus kodakarensis KOD1]
 gi|57158278|dbj|BAD84208.1| predicted ABC-type transport system, ATPase component
          [Thermococcus kodakarensis KOD1]
          Length = 339

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I  L I  FR    L L    Q  +  G N  GK+++LEA+S  
Sbjct: 2  ITSLQIENFRGIKKLNLSNLGQINVIAGKNNAGKSSVLEALSLF 45


>gi|125973461|ref|YP_001037371.1| SMC protein-like protein [Clostridium thermocellum ATCC 27405]
 gi|125713686|gb|ABN52178.1| SMC protein-like protein [Clostridium thermocellum ATCC 27405]
          Length = 483

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          IK + I  F+++    L F     + VG +  GK+ I+ AI ++            D  R
Sbjct: 4  IKRIRIENFQSHKDTELSFSDGLNVIVGPSDQGKSAIIRAIKWVLYNE----PRGTDFIR 59

Query: 67 IGSPSF 72
           G+ S 
Sbjct: 60 QGTNSA 65


>gi|291460145|ref|ZP_06599535.1| putative RecF/RecN/SMC N domain protein [Oribacterium sp. oral
          taxon 078 str. F0262]
 gi|291417486|gb|EFE91205.1| putative RecF/RecN/SMC N domain protein [Oribacterium sp. oral
          taxon 078 str. F0262]
          Length = 434

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 6  KIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          KI  L I   +   +++L   A   TI  G N  GKT++L+AI++   G  FR +    
Sbjct: 4  KINKLEIENVKRVKAVKLEPSASGLTIIGGKNNQGKTSVLDAIAWTLGGNNFRPSKATR 62


>gi|237736930|ref|ZP_04567411.1| chromosome partition protein smc [Fusobacterium mortiferum ATCC
           9817]
 gi|229420792|gb|EEO35839.1| chromosome partition protein smc [Fusobacterium mortiferum ATCC
           9817]
          Length = 1172

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           + +K + I  F+++   + + F+   T  VG NG GK+NIL+A+ ++   + +   R   
Sbjct: 1   MFLKAVEIFGFKSFGERVYIEFNRGLTSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--------INDVVIR 111
            +DV   G        FA V      +D  + +E  + +  R L         IND   R
Sbjct: 61  SSDVIFSGGKDKKAMNFAEVSLYIDNSDSFLAVENDEIKITRKLHSTGENEYFINDSKSR 120

Query: 112 VVD 114
           + D
Sbjct: 121 LKD 123


>gi|254480602|ref|ZP_05093849.1| chromosome segregation protein SMC [marine gamma proteobacterium
           HTCC2148]
 gi|214039185|gb|EEB79845.1| chromosome segregation protein SMC [marine gamma proteobacterium
           HTCC2148]
          Length = 1165

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNVIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRI--------GSPSFFSTFARVEGMEG-----LADISIKLETRDDRSVRCLQIND 107
            ADV           G  S    F   +G  G      A+ISIK     +       +N 
Sbjct: 61  MADVIFNGSVNRQPVGQASIELVFDNTDGRVGGEYASYAEISIKRLVSREGQS-EYFLNG 119

Query: 108 VVIRVVD 114
              R  D
Sbjct: 120 TKCRRRD 126


>gi|330830680|ref|YP_004393632.1| chromosome segregation protein SMC [Aeromonas veronii B565]
 gi|328805816|gb|AEB51015.1| Chromosome segregation protein SMC [Aeromonas veronii B565]
          Length = 1124

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 63/365 (17%), Positives = 123/365 (33%), Gaps = 54/365 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    R+   A  T  VG NG GK+N+++A+ ++   S  R  R  +
Sbjct: 1   MRLKLIKLAGFKSFVEPTRIELSADMTAVVGPNGCGKSNVIDAVRWVLGESSARHLRGEN 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS +            F +   RV G  G   +IS++ E   D S    QIN 
Sbjct: 61  MTDVIFNGSINRSAHGRASVELVFDNPHNRVPGEFGRFTEISVRREVLRDGSN-HYQING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFER 164
              R  D        + L P    I    ++ R    R  D  +F  +      +  ++ 
Sbjct: 120 QKCRRKDV-TDLFLGTGLGPRSYAIIEQGTVSRLVESRPADLKLFMEE---AAGVSRYKE 175

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH- 223
             R   + +     +      I  ++          R++ + A +     Y Q ++    
Sbjct: 176 RRRETEQRIRHTQENLERLGDIRGELGS--------RLDHLKAQAETAERYKQLKSRSRA 227

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            +  L G      +      K E A+       +D+             + +    +   
Sbjct: 228 ARAELIGSELWALETRLGEAKTELAQAEQALAALDAKRTAD----EGRHVTLSVARQEAQ 283

Query: 284 IAHGSTGEQKVVL---VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
               S  +Q++ L       L   +L  +  G               + +  AL   +  
Sbjct: 284 AEQASR-QQQIFLGGQAIARLEQQQLHQSELGRDW------------QARAEALGERIAT 330

Query: 341 IGSQI 345
             +Q+
Sbjct: 331 RKAQL 335



 Score = 38.3 bits (88), Expect = 2.0,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 63/191 (32%), Gaps = 16/191 (8%)

Query: 166  MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
            +     +  +         ++E Q+  LG     A  E   A +       Q ++     
Sbjct: 893  LDQAVLIAADRSKLRQEIQTLEGQVEALGAINLAALEEYEEAKNRATYLENQCQDLEQAL 952

Query: 226  LSLTGFLDGKFDQSFCALKEEY---AKKLFDGRKMDSMSRRTLIGPHRSDLIVDY----- 277
             +L+  +     ++    ++ +    + L              +     DL+        
Sbjct: 953  ETLSQAIKRIDKETQIRFRDTFDKVNEDLKSLFPKVFGGGSAWLELTSDDLLEAGVSIMA 1012

Query: 278  ---CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
                 K  TIA  S GE+ +  + +  A  RL       AP  LLDE+ A LDE      
Sbjct: 1013 RPPGKKNATIALLSGGEKALTALALVFAIFRL-----NPAPFCLLDEVDAPLDEVNVGRF 1067

Query: 335  FRIVTDIGSQI 345
              +V ++ S +
Sbjct: 1068 CSLVKEMSSTV 1078


>gi|283798646|ref|ZP_06347799.1| conserved hypothetical protein [Clostridium sp. M62/1]
 gi|291073630|gb|EFE10994.1| conserved hypothetical protein [Clostridium sp. M62/1]
 gi|295090668|emb|CBK76775.1| hypothetical protein [Clostridium cf. saccharolyticum K10]
          Length = 619

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++  ++ I  F++   + L       I VG N  GKT++L+A+  ++ GR
Sbjct: 1  MRFTYIRIRNFKSIRDMELSEIDSALILVGKNNTGKTSVLDAVRLMTGGR 50


>gi|116514369|ref|YP_813275.1| DNA repair ATPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093684|gb|ABJ58837.1| DNA replication and repair protein RecN [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 562

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 72/211 (34%), Gaps = 34/211 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  Q T+ +G+ G GK+ +++A+S L    G R     ++ R
Sbjct: 2   LVELDIQNFAIIKSLKIKFQPQMTVLIGETGAGKSILIDALSLLL---GHRAQK--ELVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADIS---------------IKLETRDDRSVRCLQINDV--V 109
            G      T       E + ++                I       +    ++IN     
Sbjct: 57  SGQSKAVVTGLFTLQDEEMREVEQIAADYGLPMDGDDLIISREISSKGRNVIRINGQLTT 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE------ 163
           I  + ++ ++L           +         R +D +        +  +  ++      
Sbjct: 117 ITALAKIGEYLVDIHGQNDQQMLMDQS-----RQIDLVDEYAGKDFKSLLGKYQAEYQTW 171

Query: 164 RLMRGRNRLLTEGYFDSSW-CSSIEAQMAEL 193
           + +  R   L     + +     ++ Q+ EL
Sbjct: 172 QSLNQRLEHLRRDSRELAQRQDILQFQVEEL 202


>gi|19112972|ref|NP_596180.1| condensin subunit Cut14 [Schizosaccharomyces pombe 972h-]
 gi|13124693|sp|P41003|SMC2_SCHPO RecName: Full=Structural maintenance of chromosomes protein 2;
          AltName: Full=Cell untimely torn protein 14; AltName:
          Full=Chromosome segregation protein cut14
 gi|7363183|emb|CAB83164.1| condensin subunit Cut14 [Schizosaccharomyces pombe]
          Length = 1172

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          +KI+ L I  F++YA   +   +D Q     G NG GK+NIL+AI F   ++     R  
Sbjct: 1  MKIEELIIDGFKSYAVRTVISNWDDQFNAITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60 SYADVT-RIGSPSFFSTFARV 79
          +  D+  + G          +
Sbjct: 61 NLQDLIYKRGQAGITRASVTI 81


>gi|325066374|ref|ZP_08125047.1| SMC domain protein [Actinomyces oris K20]
          Length = 382

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +  L +  FR+   L L      T+ +G NG GK+N++ A+  +S
Sbjct: 4  ALGRLVVEGFRSIRRLELDLTTDVTVLIGANGSGKSNLVSALELVS 49


>gi|307265766|ref|ZP_07547317.1| SMC domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919161|gb|EFN49384.1| SMC domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 122

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 7  IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K + I+ FR   + L ++F+   T+ VG+N  GKT++++AI
Sbjct: 2  LKRIKINNFRCLQNNLEIIFEEDLTVIVGENDSGKTSLVDAI 43


>gi|291530315|emb|CBK95900.1| hypothetical protein EUS_06270 [Eubacterium siraeum 70/3]
          Length = 617

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          +++ +  ++  FRN+  +      + T+  G NGVGK+N+L   S ++ G G 
Sbjct: 6  KLRPEHFSVEYFRNFKEVSFELGRKITVISGQNGVGKSNLL---SLIASGSGL 55


>gi|288560428|ref|YP_003423914.1| hypothetical protein mru_1172 [Methanobrevibacter ruminantium M1]
 gi|288543138|gb|ADC47022.1| hypothetical protein mru_1172 [Methanobrevibacter ruminantium M1]
          Length = 117

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 7/90 (7%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR- 57
          M  +  IK L I  FR    L+  F+ +  +  G NG GK++I +A  +L  G+    + 
Sbjct: 1  MGQKFNIKELEIRSFRGIKDLKYDFEGKSLVLCGPNGCGKSSITQAFEYLFTGQVASLKG 60

Query: 58 ---RASYADVTRIG-SPSFFSTFARVEGME 83
                   +   G S       A++ G  
Sbjct: 61 IQGVKHDESLIHKGDSKEDLLVKAKIGGQY 90


>gi|326318311|ref|YP_004235983.1| DNA repair protein RecN [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323375147|gb|ADX47416.1| DNA repair protein RecN [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 557

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 17/128 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + + +F    SL L      T+  G+ G GK+ +++A+  L   R     +   V
Sbjct: 1   MALKRIALRDFVIVESLELDLHTGFTVLTGETGAGKSILIDALQLLLGAR-----ADPGV 55

Query: 65  TRIGSPSFF---------STFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            R G+ S           +  A ++      +  + L    D   +    IN V +    
Sbjct: 56  VREGAASTDLCAEFDGTPAIAAWLDDAGIPPEDGLLLRRTIDTQGKSRAWINGVPVTATQ 115

Query: 113 VDELNKHL 120
           +  L  HL
Sbjct: 116 MRTLGSHL 123


>gi|261402241|ref|YP_003246465.1| ATPase-like protein [Methanocaldococcus vulcanius M7]
 gi|261369234|gb|ACX71983.1| ATPase-like protein [Methanocaldococcus vulcanius M7]
          Length = 369

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          K + I+ FR   +L +    +  +FVG N  GKT++LE I  LS
Sbjct: 3  KKVIINSFRGINNLEIDDLKRINLFVGKNNCGKTSVLEGIYLLS 46


>gi|229526763|ref|ZP_04416167.1| hypothetical protein VCA_000893 [Vibrio cholerae bv. albensis
          VL426]
 gi|229336921|gb|EEO01939.1| hypothetical protein VCA_000893 [Vibrio cholerae bv. albensis
          VL426]
          Length = 663

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          +KIK + I  +R    +    D + T+ VG N  GKT+  EA       R F
Sbjct: 1  MKIKNVRIKNYRLLKDVSFSIDEKTTLIVGRNNTGKTSFAEAF------RSF 46


>gi|188995988|ref|YP_001930239.1| DNA repair protein RecN [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931055|gb|ACD65685.1| DNA repair protein RecN [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 532

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 73/194 (37%), Gaps = 17/194 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I +F     + +    +  +F G+ GVGK+ I++AISF+   RG           
Sbjct: 2   LSEIRIKKFLYLKDIEISLSDRLNVFTGETGVGKSLIIDAISFVLGERG----------S 51

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHLRISW 124
                +       +       I I L  +         +N   +   ++DE++++L    
Sbjct: 52  FEENDYVELMFEADNQYAEDGILI-LARQVKNGRNIYYLNGRKVVKSIIDEISQNLIEIH 110

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDP--RHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
              +  ++F   +  +R   D+   A D     ++   ++ ++ +    +L++   +   
Sbjct: 111 GQHASQKLF--DADYQREIFDKFAKAEDKLEEFQKLYSEYIKVKKEYEDILSKQAENQRK 168

Query: 183 CSSIEAQMAELGVK 196
              +  Q+ EL   
Sbjct: 169 IDFLTFQINELSSA 182


>gi|152987787|ref|YP_001348414.1| hypothetical protein PSPA7_3054 [Pseudomonas aeruginosa PA7]
 gi|150962945|gb|ABR84970.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
          Length = 896

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 16/191 (8%)

Query: 175 EGYFDSSWCSSIEAQMAELGVK--INIARV---EMIN--ALSSLIMEYVQKENFPHIKLS 227
               D +   ++  ++AEL  +  ++  R      I    +   +       N   +   
Sbjct: 524 RASADPAVRLALTRELAELEARQRLSGQRAAVERFIQDSQVHDKLSRCHGALNPQAVSRK 583

Query: 228 LTGFLDGKFDQSFCALKEEYAKKL-FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           LT        ++         K L +  R    ++ RT +G  +  L +       +   
Sbjct: 584 LTALAATHVTEALATTMNAELKALGYKRRVQPDLTGRTDLGVTKVTLRLKDISAKASKVL 643

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--Q 344
            S GEQ+ + + +FLA    + +       ++ D+ S  LD   R A+ R +  +    Q
Sbjct: 644 -SEGEQRALGLAMFLAELESLPH----TSTVVFDDPSTSLDHVYRRAIARRLVALSETRQ 698

Query: 345 IFMTGTDKSVF 355
           + +  T  +VF
Sbjct: 699 VLV-LTHDAVF 708


>gi|315924842|ref|ZP_07921059.1| DNA repair protein RecN [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621741|gb|EFV01705.1| DNA repair protein RecN [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 572

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 122/353 (34%), Gaps = 45/353 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K ++I+ +     L + +D+   +  G+ G GK+ +++A++ +   R     +     R
Sbjct: 2   LKRISITNYALIEQLDINWDSHLNVITGETGAGKSIVIDALTLILGQR-----ANKQNIR 56

Query: 67  IGSP--------SFFSTFARVEGMEGLA----DISIKLETRDDRSV-RCLQIND--VVIR 111
            G+         SF    A  E +  +A    D  + L     RS     ++N   V + 
Sbjct: 57  QGADRMSVQGVFSFDQNSAVHEHLAEMAIATPDDELILTRSISRSGHNVCRVNGYAVTVA 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            +  L + L         + +F     +RR         +     +     ++ ++  ++
Sbjct: 117 QLKTLGRDLVDIHSQHENNSLFQ-SEAQRRLLDAWGGTPVAALLLKTRQQADK-LKTLSK 174

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI--NALSSLIMEYVQKENFPHIKLSLT 229
            + +   D+      +  +A    +I  A ++     AL          E    +     
Sbjct: 175 TIRDQEKDAREIERRKEMIAFELAQIREAHLDPAADAALEKEQRILENGEMLFSLAGEAR 234

Query: 230 GFLDGKFDQSFCALK--EEYAKKLFDGRKMDSM---SRRTL------IGPHRSDLIVDYC 278
             LDG   +S   L+   +  ++L     +D      R+T+      +G    +L V   
Sbjct: 235 SLLDGDDGESAGVLESLAQLQERLARLSAIDETFAPYRQTVKDALDGLGDLSGELGVYLS 294

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG---FAPILLLDEISAHLDE 328
           D A       T EQ+       LA    +    G      +   ++++  LD+
Sbjct: 295 DMAFDPKRLETVEQR-------LALIEGLRRKYGATVEEIVAYGEQLAEELDD 340


>gi|300811666|ref|ZP_07092142.1| DNA repair protein RecN [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497367|gb|EFK32413.1| DNA repair protein RecN [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 562

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 67/215 (31%), Gaps = 37/215 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F  Q T+ +G+ G GK+ +++A+S L    G R     ++ R
Sbjct: 2   LVELDIQNFAIIKSLKIKFQPQMTVLIGETGAGKSILIDALSLLL---GHRAQK--EMVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADIS---------------IKLETRDDRSVRCLQINDV--V 109
            G      T       E + ++                I       +    ++IN     
Sbjct: 57  SGQSKAVVTGLFTLQDEEMREVEQIADDYGLPMDGDDLIISREISSKGRNVIRINGQLTT 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGL---------------SMERRRFLDRMVFAIDPR 154
           I  + ++ ++L           +                    +  +   +   +    +
Sbjct: 117 ITALAKIGEYLVDIHGQNDQQMLMDQSRQIDLVDEYAGKDFKPLLGKYQAEYRTWQSLNQ 176

Query: 155 HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
               +    R +  R  +L     + +     + Q
Sbjct: 177 RLEHLRRDSRELAQRQDILQFQVEELTQADLTDEQ 211


>gi|257468091|ref|ZP_05632187.1| chromosome partition protein smc [Fusobacterium ulcerans ATCC
          49185]
 gi|317062376|ref|ZP_07926861.1| chromosome partition protein smc [Fusobacterium ulcerans ATCC
          49185]
 gi|313688052|gb|EFS24887.1| chromosome partition protein smc [Fusobacterium ulcerans ATCC
          49185]
          Length = 1172

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          + +K + I  F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++     +
Sbjct: 1  MYLKAVEIFGFKSFGERVYIEFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60


>gi|328781019|ref|XP_003249903.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD50 [Apis
          mellifera]
          Length = 1377

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 6  KIKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ L+I   RN+        + F    T+ +G NG GKT I+EA+ F + G
Sbjct: 3  RIRRLSIRGIRNFGDEKEEALIKFSRPLTLILGPNGTGKTTIIEALKFATCG 54


>gi|302335014|ref|YP_003800221.1| hypothetical protein Olsu_0209 [Olsenella uli DSM 7084]
 gi|301318854|gb|ADK67341.1| conserved hypothetical protein [Olsenella uli DSM 7084]
          Length = 520

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 59/392 (15%), Positives = 126/392 (32%), Gaps = 64/392 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP-GRGFRRASYAD 63
           +KI+ + I+ FR YAS   V     T+FVG N +GK+++LEA+      G+G        
Sbjct: 1   MKIRSVEITNFRGYASETEVAMDDLTVFVGKNDIGKSSVLEALDIFFNDGKGA-VKFDKS 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV-VIRVVDELNKHLR 121
              + +       A +  +       I ++T    +++    +N    + +V +      
Sbjct: 60  DINVENQKGGDQEASIAVVFADLPDEIVIDTTAKTNLKDSYLLNGEDKLEIVKKYKG--- 116

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG------------- 168
                       +G      + L            ++  D ++L++              
Sbjct: 117 ------------TGAPKVYIKALHPTNSGCCDLLLKKNADLKKLVKQYKLEEEVDTKSNV 164

Query: 169 --RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
             R  L +    D            E    I       +   S    +    ++   ++ 
Sbjct: 165 SMRAALWSHFSDDLKLQEIEIDISKEDAKAIWSKLSTYMPVYSLFQADRENSDSDSEVQD 224

Query: 227 SLTGFL-----DGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRTLIGPHRSDLIV---- 275
            L   +     D    +    + ++  +KL +   R +D +           D ++    
Sbjct: 225 PLKESVKEVLNDLALKEELDEVAQKVREKLQEVANRTVDKLKEVDPEVASSLDPVIPATE 284

Query: 276 ------------DYCDKAITI-AHGSTGEQKVVLVGIFLAHAR-LISNTTGFAPILLLDE 321
                          D  I I   GS G ++++L+  F A A   ++ +     I  ++E
Sbjct: 285 SLKWADVFKNVSITGDGDIPINKRGS-GTKRLILLSFFRAEAERRLAESETNGVIYAIEE 343

Query: 322 ISAHLDEDKRNALFRIVTDI----GSQIFMTG 349
                  + +  L   + ++    G Q+ +T 
Sbjct: 344 PETAQHTENQKKLIEALQELSKIDGVQVILTT 375


>gi|33667844|gb|AAQ24522.1| Rad18 [Giardia intestinalis]
          Length = 1283

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I  L+I+ F  +    + F+   ++  G NG GK++IL+AI F+  G+       A   R
Sbjct: 23 ILRLHITNFLTHRDKVVDFECPVSLIHGPNGAGKSSILQAIHFVLGGK-------AKNIR 75

Query: 67 IGSPSF 72
               F
Sbjct: 76 DNCERF 81


>gi|260655697|ref|ZP_05861170.1| putative RecF/RecN/SMC N domain protein [Jonquetella anthropi E3_33
           E1]
 gi|260629614|gb|EEX47808.1| putative RecF/RecN/SMC N domain protein [Jonquetella anthropi E3_33
           E1]
          Length = 1114

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 94/302 (31%), Gaps = 36/302 (11%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRASYADVTRIGSPSFFSTFAR 78
           + F    T  VG NG GK+NIL+ + + + G       R A  +D+   GS +     + 
Sbjct: 1   MPFAPGFTAIVGPNGSGKSNILDGLRW-ALGESSASRLRIARQSDLIFQGS-AGMVEASE 58

Query: 79  VEGMEGLADISI--KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL 136
            E    L+D +    L     +S   +  + V IR + +L        L           
Sbjct: 59  AEVTVQLSDGATHPTLRRSLSQSGAEIWADGVKIR-LGDLGAFKEEVGLGGERFAFIGQG 117

Query: 137 ---------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
                      ERR  L+ +      R RR     E  ++     L          ++  
Sbjct: 118 EVTEAISQRPKERRLQLEELFGVDRYRRRRDDAALE--LKEAQDELLRLQTLIGELTARR 175

Query: 188 AQMAELG-----VKINIARVEMINALSSLIMEYVQKENFPH-----IKLSLTGFLDGKFD 237
            ++A         +   AR+E +N     +  + ++           KL         ++
Sbjct: 176 DEIAPQAALAKRAQELEARLETLNGRLYHLRRFEEERRLADAKARGEKLQAGFSRATWWN 235

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
             + +  +         R+ D   +R      R D +    + A      + G  +    
Sbjct: 236 AGWSSQLDRLR------RRGDEYLKRRAQLQERQDELTPMLENARQAETAAQGTIRENAF 289

Query: 298 GI 299
            +
Sbjct: 290 AL 291


>gi|239906244|ref|YP_002952984.1| hypothetical protein DMR_16070 [Desulfovibrio magneticus RS-1]
 gi|239796109|dbj|BAH75098.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 395

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI+ + +  F+++    L       + VG NG GK+ I +   FL
Sbjct: 1  MKIESIRLRNFKSFQDAELSDLPSFCVIVGANGTGKSTIFQVFGFL 46


>gi|190341563|gb|ACE74858.1| RecN [Enterobacter turicensis]
          Length = 553

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F A  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEVDFHAGMTAITGETGAGKSIAIDALGLCLGGR-----ADADMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              P+      + +  +G   +  ++ + D RS   +    V +  
Sbjct: 57  PGAGRADLCARFSLKDTPAALRWLEQNQLDDGRECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLMR 167
           + EL + L       +   +       ++  LD       +        R      R + 
Sbjct: 117 LRELGQLLIQIHGQHAHQLLLK--PDHQKALLDGYAGEHTLTQQMAAAYREWHQSCRALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
              +L  E    +   +    Q+ EL
Sbjct: 175 QHQQLSQERAARAELLAY---QLKEL 197


>gi|187479196|ref|YP_787221.1| DNA repair protein [Bordetella avium 197N]
 gi|115423783|emb|CAJ50334.1| DNA repair protein [Bordetella avium 197N]
          Length = 550

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/282 (16%), Positives = 98/282 (34%), Gaps = 20/282 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FR-RASY 61
           ++ L+I +F       + F A  T+F G+ G GK+ +++A++     RG     R  A+ 
Sbjct: 2   LRTLHIRDFVIVEQTEIHFGAGFTVFTGETGAGKSILIDALALALGERGDASVLREGAAR 61

Query: 62  ADVTR-IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--IRVVDELNK 118
           AD+T    SP   S +     +E   ++S++         R   IN +   +  + EL +
Sbjct: 62  ADITAIFDSPQHLSDWLTERELEPAEELSLRRVIDAHGRSRAF-INGLPATVTQLRELGE 120

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNRLLTEG 176
            L       +   +       +R  LD      +      +    +  L+R     L   
Sbjct: 121 ELVDIHGQHAHQSLMR--PEAQRELLDAHGGHAELRQTVAQAWKRWRGLVRQ----LETA 174

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVE--MINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
             D+   ++   ++      ++   +       L +        +        +   LDG
Sbjct: 175 EQDAETLAAERERLQWQADDLDRLNLAEGEWETLQAEHNRLSHAQGLLDGAGQILEALDG 234

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
           + D +   L      +L   ++ DS  R        + + + 
Sbjct: 235 EQDSALSRLNAA-THRLQQMQRHDSGLRSITETLESARITIS 275


>gi|159108258|ref|XP_001704401.1| SMC6 protein [Giardia lamblia ATCC 50803]
 gi|157432463|gb|EDO76727.1| SMC6 protein [Giardia lamblia ATCC 50803]
          Length = 1305

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L+I+ F  +    + F+   ++  G NG GK++IL+AI F+  G+       A   R
Sbjct: 45  ILRLHITNFLTHRDKVVDFECPVSLIHGPNGAGKSSILQAIHFVLGGK-------AKNIR 97

Query: 67  IGSPSF 72
                F
Sbjct: 98  DNCERF 103


>gi|288573533|ref|ZP_06391890.1| ATPase-like protein [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569274|gb|EFC90831.1| ATPase-like protein [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 420

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 60/390 (15%), Positives = 114/390 (29%), Gaps = 58/390 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K   +  FR      + F     +F+G N  GKT ++EA+ FL            D+  
Sbjct: 2   LKKFCVQNFRVLLDEEMEFGE-VNLFLGPNNCGKTTLIEAVHFLPRMVS------KDI-- 52

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ------INDVVIRVVD----EL 116
                     A ++ ++      I    +  RSV+          N+ ++  +     + 
Sbjct: 53  -----APKRTAFLDFIDSNGWDEIPNRAQSSRSVKIKYTLDAPNWNNPLVYDMSFEAGQK 107

Query: 117 NKHLRISWLVPSMDR--------------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
                  ++                             R  + R      P     +   
Sbjct: 108 LDIPHGFYISRESLMYENANEGYDQPFCFFKRESPETGRFSVKRSGKKEFPPMA--LERA 165

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           E + R    LL    F +         + +    + + R      +   +M +  K    
Sbjct: 166 ESVFRQDEELLKNSGFRNELYPVFSDGLEKARESLGVFRSYSSTDIRLDLMRFASKMEDE 225

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK--MDSMSRRTLIGPHRSD----LIVD 276
              L   G    +   S     EEY   L +     +  +   +     RSD    L   
Sbjct: 226 DRYLLFDGSNFARVLFSLKQKNEEYLNDLSENASVFIKGLRGFSFD--ERSDGTVQLYCT 283

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
                 ++   S G +K+++      H  L+++      + L DE   +L       L  
Sbjct: 284 INGSVFSLNELSDGTKKLLV------HLFLLTSPLKMDALSL-DEPELNLHPAWLGGLAG 336

Query: 337 IVTDIGS---QIFMTGTDKSVFDSLNETAK 363
            +   GS   QIF++     + D   E  +
Sbjct: 337 KILKAGSVSRQIFVSTHSPDLLDGFTEAFR 366


>gi|171321099|ref|ZP_02910078.1| DNA repair protein RecN [Burkholderia ambifaria MEX-5]
 gi|171093638|gb|EDT38796.1| DNA repair protein RecN [Burkholderia ambifaria MEX-5]
          Length = 549

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 90/259 (34%), Gaps = 30/259 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++     A+ ++ L    D + R    IN     +  + 
Sbjct: 57  AGCGRADITAEFTPHDRVARWLDEHAFDAEDTVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 ELGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAD--AANVARAWRVWRDATQAID 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+  +    H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQPGEW-DEVGSEHKRLSHSANLIA 223

Query: 235 KFDQSFCALKEEYAKKLFD 253
               +  AL E     L  
Sbjct: 224 GVQGALNALSEADDAMLAQ 242


>gi|313894522|ref|ZP_07828086.1| DNA repair protein RecN [Veillonella sp. oral taxon 158 str. F0412]
 gi|313440918|gb|EFR59346.1| DNA repair protein RecN [Veillonella sp. oral taxon 158 str. F0412]
          Length = 554

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 64/419 (15%), Positives = 131/419 (31%), Gaps = 66/419 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + + F+   TIF G+ G GK+ +++A S L    G R +S  +  R
Sbjct: 2   LTQMSIRNFALIEQMNISFNDGITIFTGETGAGKSILMDAFSILL---GERASS--EFIR 56

Query: 67  IGSPSFFSTFARVEGMEGLA------------DISIKLETRDDRSVRCLQI-NDVVI--R 111
            G  SF                          +  + L    +R+ +   + ND  I  +
Sbjct: 57  HGKDSFVIDGIFDIAHHQSIQELLESKNIMVEEGQLILSRSFNRNGKSSILANDQPIPLK 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLS-MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            + E+ ++L       S  R+    +  E     ++        +      +++  +  +
Sbjct: 117 ALKEIGQYLADIHGQYSNQRLLDADTHHEYLDTFNQDGKTAYKAYIEAYKVYKQAKQEVD 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAE-------LGVKINI----ARVEMINALSSLIMEYVQKE 219
            L       +     +  Q+ E       +G  I+I     R++    +  ++       
Sbjct: 177 NLQENMSERARELDMLRYQIDEIEDAGLSIGEDISIAEELKRLDSFEHIDKVLGSCYDAF 236

Query: 220 NFPH---------IKLSLTGFL--DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
                        IK+ +   +  D +  +    +   Y +     + +D          
Sbjct: 237 YNGRQPLLDTINSIKVEVNDLVKYDAELKEVSEMVDSAYFQLEEAAQSLDRYRDTISY-- 294

Query: 269 HRSDLIVDYCDKAITIAHG-------STGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
              +    YC    T  +G       S  E  ++      A ARL         +   DE
Sbjct: 295 --DEERYKYCQDRDTTIYGLKKKYGDSVEE--ILAYEEK-AQARL---EELEGLVFAQDE 346

Query: 322 ISAHLDEDKRNA-----LFRIVTDIGSQIFMTGTDKSVFDSLNETAKF-MRISNHQALC 374
           + A L+E K+ A     +   V    +++  T   + + D           I     L 
Sbjct: 347 LEARLEEAKKVAEEALTVLHKVRLKNAKVIATALHQELVDLGMPKGDIQFHIEEGDELS 405


>gi|172059721|ref|YP_001807373.1| DNA repair protein RecN [Burkholderia ambifaria MC40-6]
 gi|171992238|gb|ACB63157.1| DNA repair protein RecN [Burkholderia ambifaria MC40-6]
          Length = 549

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 89/252 (35%), Gaps = 30/252 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   +E     A+ ++ L    D + R    IN     +  + 
Sbjct: 57  AGCGRADITAEFTPHDRVARWLEEHAFDAEDTVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 ELGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAD--AANVARAWRVWRDATQAID 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+  +    H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQPGEW-DEVGSEHKRLSHSANLIA 223

Query: 235 KFDQSFCALKEE 246
               +  AL E 
Sbjct: 224 GVQGALNALSEA 235


>gi|170766770|ref|ZP_02901223.1| ATP/GTP-binding protein [Escherichia albertii TW07627]
 gi|170124208|gb|EDS93139.1| ATP/GTP-binding protein [Escherichia albertii TW07627]
          Length = 397

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++++ L +  FR Y +   ++ D   T  VG N  GK+ +LEA++  
Sbjct: 1  MRLRKLKLKNFRGYRNSTEIIIDESMTGIVGRNDFGKSTLLEALAIF 47


>gi|83855048|ref|ZP_00948578.1| SMC protein [Sulfitobacter sp. NAS-14.1]
 gi|83842891|gb|EAP82058.1| SMC protein [Sulfitobacter sp. NAS-14.1]
          Length = 1151

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFSKLRLTGFKSFVDPTDLIISDGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             DV   G+ S     F      ++  E LA          +   R  +      +   +
Sbjct: 61  MEDVIFAGASSRPAKNFAEVALHIDNSERLAPAGFNDGDSIEIIRRITRDVGSAYKAAGK 120

Query: 116 LNKHLRISWL---------VPSMDR------IFSGLSMERRRFLD 145
             +   +  L          P++ R      + +     RRR L+
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKNRRRILE 165


>gi|148257408|ref|YP_001241993.1| DNA repair protein RecN [Bradyrhizobium sp. BTAi1]
 gi|146409581|gb|ABQ38087.1| DNA replication and repair protein RecN [Bradyrhizobium sp. BTAi1]
          Length = 557

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 75/231 (32%), Gaps = 37/231 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  R+ I+ + +        L L F     +  G+ G GK+ +L+A +    GRG     
Sbjct: 1   MLARLSIRDIVL-----IERLDLEFSNGLAVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61  YADVTRIGSPSFFST----------FARV---EGMEGLADISIKLETRDDRSVRCLQIND 107
            A + R G+     T           AR+    G++   ++ ++     D   R   IND
Sbjct: 51  DASLVRHGAEQGQVTAVFEIGKEHPAARILAANGLDANGEMILRRVQYGDGRTRAF-IND 109

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM------VFAIDPRHRRRMID 161
             + V         +  +    D      +   RR LD        V A++     R   
Sbjct: 110 QSVSVQTLKAIGATLVEIHGQHDERALVDAATHRRLLDAFAGLEKDVAAVEALWVARRTA 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMIN 206
               +      +     ++ +      ++ +L        ++   R  M+ 
Sbjct: 170 VT-ALDQHRAGMERAAREADYLRHAADELKKLAPKEGEETQLAARRTAMMQ 219


>gi|254503972|ref|ZP_05116123.1| DNA repair protein RecN [Labrenzia alexandrii DFL-11]
 gi|222440043|gb|EEE46722.1| DNA repair protein RecN [Labrenzia alexandrii DFL-11]
          Length = 553

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 78/239 (32%), Gaps = 34/239 (14%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I +      L L F A  ++  G+ G GK+ +L+A+S     RG      AD+ R G 
Sbjct: 5   LSIRDIVLIDRLDLDFAAGMSVLTGETGAGKSILLDALSLALGARG-----DADLVRHGE 59

Query: 70  PSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                              F +   ++   D+ ++     D   R    +  V   +   
Sbjct: 60  GQGQVTAVFDVEMAHPVRAFLKDNSIDDDGDVILRRVQAADGRTRAFINDQPVSAGLLRQ 119

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF------AIDPRHRRRMIDFERLMRGRN 170
              L +       DR         R  +D          A+   + +     E+ +    
Sbjct: 120 AGALLVEIHGQHDDRALV-DPESHRALIDVFGGLTSDVDAVAKAY-QAYRTAEKAVSDHE 177

Query: 171 RLLTEGYFDSSWCSSIEAQMAEL------GVKINIARVEM--INALSSLIMEYVQKENF 221
             +     ++ +  S   ++++L        ++   R +M  +  ++  + E  +  N 
Sbjct: 178 ARIEAARNEADYLRSSVEELSQLKPEAGEEDQLAARRTDMMAVEKIAGDLSEAYETLNG 236


>gi|83951616|ref|ZP_00960348.1| SMC protein [Roseovarius nubinhibens ISM]
 gi|83836622|gb|EAP75919.1| SMC protein [Roseovarius nubinhibens ISM]
          Length = 1151

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 30/228 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           +    L ++ F+++     L+ +   T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MHFSKLRLTGFKSFVDPTDLIINDGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-------INDV 108
             DV   G+ S     F      ++  E LA  +       D   R  +       +N  
Sbjct: 61  MEDVIFAGAKSRPARNFAEVALSIDNSERLAPAAFNDSDTLDVIRRITRDVGSAYQVNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKARRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI-ARVEMINA 207
             E  ++ ++        D      +  Q+A+L  +    AR   I  
Sbjct: 177 RHEAELKLKSAETNLTRVDDV-VEQLAGQLAQLARQARQAARYRSIGE 223


>gi|307353310|ref|YP_003894361.1| ATPase [Methanoplanus petrolearius DSM 11571]
 gi|307156543|gb|ADN35923.1| ATPase [Methanoplanus petrolearius DSM 11571]
          Length = 415

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +I+ L +  +R    L L      T+F+G NG GK+ I +  +FLS
Sbjct: 9  RIEELTVKNYRTLRDLELKSLTPFTVFLGPNGSGKSTIFDVFAFLS 54


>gi|50310839|ref|XP_455442.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644578|emb|CAG98150.1| KLLA0F07997p [Kluyveromyces lactis]
          Length = 1119

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 3/71 (4%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYADVT 65
            L ++ F  YA           + +G NG GK+  + AI     G+     R     +  
Sbjct: 62  KLKLTNFVTYALTEFHLSPSLNMIIGPNGSGKSTFVCAICLGLAGKPEYIGRSKKVEEYI 121

Query: 66  RIGSPSFFSTF 76
           + G+       
Sbjct: 122 KNGTDEGVIEI 132


>gi|47550693|ref|NP_999854.1| structural maintenance of chromosomes protein 3 [Danio rerio]
 gi|27881878|gb|AAH44408.1| Structural maintenance of chromosomes 3 [Danio rerio]
          Length = 1216

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 51/278 (18%), Positives = 88/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFRSYRDQTVVDPFGSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEDEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  S+R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSSKRETCG 250



 Score = 36.4 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QI 345
            S G++ +V + +  A           AP  L DEI   LD   R A   ++ ++    Q 
Sbjct: 1115 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAASDMIMELAGHAQF 1169

Query: 346  FMTGTDKSVFDS 357
              T     + +S
Sbjct: 1170 ITTTFRPELLES 1181


>gi|99082427|ref|YP_614581.1| chromosome segregation protein SMC [Ruegeria sp. TM1040]
 gi|99038707|gb|ABF65319.1| Chromosome segregation protein SMC [Ruegeria sp. TM1040]
          Length = 1151

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 78/224 (34%), Gaps = 30/224 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+ ++   +  +  R   
Sbjct: 1   MRFSKLRLNGFKSFVDPTDLIIADGLTGVVGPNGCGKSNLLEALRWVMGETRAKAMRGGG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             DV   G     + +F     +++  E LA        + D   R  +      +   +
Sbjct: 61  MEDVIFAGTATRPARNFAEVSLQIDNSERLAPSGFNDSDQLDIVRRITRDVGSAYKANAK 120

Query: 116 LNKHLRISWL---------VPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             +   +  L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKARRRVLE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARV 202
             E  ++ +N        D      ++   Q++    +    R 
Sbjct: 177 RHEAELKLKNTEQNLLRVDDVIEQLATQLGQLSRQAKQAQRYRE 220


>gi|323345725|ref|ZP_08085948.1| DNA repair protein RecN [Prevotella oralis ATCC 33269]
 gi|323093839|gb|EFZ36417.1| DNA repair protein RecN [Prevotella oralis ATCC 33269]
          Length = 554

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 21/205 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  F     L + F+   ++  G+ G GK+ IL AI  L    +  +  +     
Sbjct: 2   LRQLYIRNFTLIDELAISFNPGFSVITGETGAGKSIILGAIGLLLGNRADMKAIKTGKER 61

Query: 63  -------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVV 113
                  DV+R G       FA  +      D   + E   +   R   IND  +   V+
Sbjct: 62  CVVEAHFDVSRYGMQ---LLFAENDIDYDDNDCIFRREINANGKSRAF-INDTPVPLSVM 117

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRNR 171
            E+ + L    +      +       +   LD +         +     D+ +       
Sbjct: 118 REIGEML--VDVHSQHQNLLLNKEDFQLSVLDIIANDDKQKNDYTETYKDYHQACEQLEA 175

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVK 196
           L +    D      +  Q  EL   
Sbjct: 176 LKSNIERDRQNEDFLRFQFNELSAA 200


>gi|254719453|ref|ZP_05181264.1| ATP/GTP-binding site motif A (P-loop) [Brucella sp. 83/13]
 gi|265984458|ref|ZP_06097193.1| DNA repair protein RecN [Brucella sp. 83/13]
 gi|264663050|gb|EEZ33311.1| DNA repair protein RecN [Brucella sp. 83/13]
          Length = 559

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L + F +  ++  G+ G GK+ +L+++S     RG      A + R
Sbjct: 2   LSHLSIRDIVLIERLDIEFRSGLSVLTGETGAGKSILLDSLSLALGARG-----DASLVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRV 112
            G+                   F R  G +   DI ++     D   R    +    + +
Sbjct: 57  HGADQGQVTAVFDVPGNHPARLFLRENGFDDDGDIILRRLQMGDGRTRVFINDQAASVAL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMR 167
           + +L + L           +    +   R  LD          +     +   D E  + 
Sbjct: 117 LRDLGRRLVEIHGQHDDRALI--DTDLHRTLLDAFGGLDAQAMLVRERHKAWRDAESALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
                + +   +  +  S   ++ +L
Sbjct: 175 KHRARVEQAEREGDYLRSSVEELTKL 200


>gi|218132764|ref|ZP_03461568.1| hypothetical protein BACPEC_00625 [Bacteroides pectinophilus ATCC
          43243]
 gi|217992490|gb|EEC58493.1| hypothetical protein BACPEC_00625 [Bacteroides pectinophilus ATCC
          43243]
          Length = 622

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          ++I +L+I  F++   L L       I VG N  GK+N+L+A+  ++
Sbjct: 1  MRIGYLHIKNFKSIKDLELTDIDDALILVGRNNSGKSNVLDAVRAVA 47


>gi|18071681|gb|AAL58284.1| acid-resistant locus arl23 [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 295

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/217 (18%), Positives = 82/217 (37%), Gaps = 23/217 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I  F     + L F++  TI  G+ G GK+ I++A+S L  GR     + +D  R
Sbjct: 2   LQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGR-----ASSDFVR 56

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIR-- 111
            G+                   A +E      D  I L      + R + +IN  ++   
Sbjct: 57  HGASKAEIEGLFFFEKTPELNSALLELGFEELDSEIILRREIFANGRSVCRINGQMVNLT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            + ++ + L           + +  S  R    F D     I   ++ +  +F+ L +  
Sbjct: 117 RLRQIGEFLVDIHGQHDSQELMNPKSHLRLLDEFGDENFEVIKNNYKNKFENFKNLRQQL 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMI 205
           N         +     ++ Q  E+   +IN+   E++
Sbjct: 177 NIRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDELL 213


>gi|262274034|ref|ZP_06051846.1| hypothetical ATP-dependent endonuclease of the OLD family
          [Grimontia hollisae CIP 101886]
 gi|262221844|gb|EEY73157.1| hypothetical ATP-dependent endonuclease of the OLD family
          [Grimontia hollisae CIP 101886]
          Length = 543

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +K+  + IS FR    L L  D   T+ +G+N  GK+++L+A+S   P  G
Sbjct: 1  MKLDRIEISGFRGIRRLSLSMDE-LTVLIGENAWGKSSLLDALSLCLPSSG 50


>gi|241764076|ref|ZP_04762114.1| DNA repair protein RecN [Acidovorax delafieldii 2AN]
 gi|241366607|gb|EER61088.1| DNA repair protein RecN [Acidovorax delafieldii 2AN]
          Length = 554

 Score = 49.9 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 17/128 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + + +F     L L   A  T+  G+ G GK+ +++A+      R     +   V
Sbjct: 1   MALKRMTLRDFVIVQELDLDLQAGFTVLTGETGAGKSILVDALQLALGAR-----ADTGV 55

Query: 65  TRIGSPSF---------FSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVV--IRV 112
            R G+             S  A +E     A+ +I L  R D   +    +N        
Sbjct: 56  VREGAAQADVCAEFDCPDSLHAWLEEAGIDANDAILLRRRVDTQGKSRAWVNGTPATATQ 115

Query: 113 VDELNKHL 120
           +  L   L
Sbjct: 116 LRFLGDQL 123


>gi|300814476|ref|ZP_07094737.1| chromosome segregation protein SMC [Peptoniphilus sp. oral taxon
          836 str. F0141]
 gi|300511394|gb|EFK38633.1| chromosome segregation protein SMC [Peptoniphilus sp. oral taxon
          836 str. F0141]
          Length = 1178

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +K + I  F+++    ++ F+   T  VG NG GK+NI +AI ++   S  +  R   
Sbjct: 1  MYLKAVYIEGFKSFAKKTKIEFNKDITAIVGPNGSGKSNITDAIMWVLGESSAKNLRGQK 60

Query: 61 YADVTRIGSPS 71
            D+   G+ +
Sbjct: 61 MEDIIFSGTDN 71


>gi|282882384|ref|ZP_06291012.1| chromosome segregation protein SMC [Peptoniphilus lacrimalis
          315-B]
 gi|281297805|gb|EFA90273.1| chromosome segregation protein SMC [Peptoniphilus lacrimalis
          315-B]
          Length = 1178

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +K + I  F+++    ++ F+   T  VG NG GK+NI +AI ++   S  +  R   
Sbjct: 1  MYLKAVYIEGFKSFAKKTKIEFNKDITAIVGPNGSGKSNITDAIMWVLGESSAKNLRGQK 60

Query: 61 YADVTRIGSPS 71
            D+   G+ +
Sbjct: 61 MEDIIFSGTDN 71


>gi|187939948|gb|ACD39084.1| hypothetical protein PACL_0296 [Pseudomonas aeruginosa]
          Length = 592

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I  + ++ FR++  +  +      T+  G N VGK+++L A+ ++
Sbjct: 18 MRITEIALTNFRSFQVTQSIALAP-VTLLFGPNSVGKSSVLMALFYI 63


>gi|182437636|ref|YP_001825355.1| hypothetical protein SGR_3843 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178466152|dbj|BAG20672.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 642

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGF--RRAS 60
           ++I  + I++F+     +L   D Q  T+  G N  GKT +L+A+  ++  RG   R   
Sbjct: 23  VRISEIVITDFKAIRHAKLTELDKQPYTLITGRNASGKTAMLQALHLITRTRGLEPRP-- 80

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
             ++ R+G   +       +   E        L      + R  +     +
Sbjct: 81  --ELVRLGKDKAGIELHFTLSDEEFHRVNLHHLSVFGKNAERRDRFRRTAV 129


>gi|307610802|emb|CBX00417.1| predicted ATPase [Legionella pneumophila 130b]
          Length = 386

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  L+I+ +R+   L+L    +  +  G NG GK+NI  A+  LS
Sbjct: 2  ISVLSINNYRSILDLKLPLG-RLNLITGPNGSGKSNIYRALRLLS 45


>gi|297191404|ref|ZP_06908802.1| bldA-regulated nucleotide binding protein [Streptomyces
          pristinaespiralis ATCC 25486]
 gi|297150906|gb|EDY66244.2| bldA-regulated nucleotide binding protein [Streptomyces
          pristinaespiralis ATCC 25486]
          Length = 412

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL---EAISFLSPGR 54
          R  +  L +S FR++ +         T+F G +G GK+N L   EA++ L  GR
Sbjct: 44 RPAVTQLRLSAFRSHRAAAFPLGP-MTLFAGPSGSGKSNALQAYEALALLGAGR 96


>gi|269104453|ref|ZP_06157149.1| hypothetical ATP-dependent endonuclease of the OLD family
          [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161093|gb|EEZ39590.1| hypothetical ATP-dependent endonuclease of the OLD family
          [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 566

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + ++ + IS FR    L L FD   ++ +G+N  GK+++L+A+S 
Sbjct: 1  MHLERIEISGFRGIKRLSLTFDE-LSVLIGENAWGKSSLLDALSI 44


>gi|313672243|ref|YP_004050354.1| DNA repair protein recn [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938999|gb|ADR18191.1| DNA repair protein RecN [Calditerrivibrio nitroreducens DSM 19672]
          Length = 547

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 59/170 (34%), Gaps = 16/170 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYAD 63
           +KFL++  F     + + F     IF G+ G GKT I+ A+  L      R F R     
Sbjct: 2   LKFLSVQNFSVIEDIEIEFSDGLNIFTGETGAGKTVIINAVKILVGEKLSRAFFRDETKP 61

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-----SVRCLQIND--VVIRVVDEL 116
             +I     FS    +   + L++  I  E    R         + +N      + +  L
Sbjct: 62  -IKI--QGIFSIKRELMAEDLLSEFEIDDEVIIRREFDLQGKNRILVNGNVATQKQLQAL 118

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFERL 165
            ++            + +        F+D ++       +  +   ++++
Sbjct: 119 TENFLDIHGQHEHQLLLN--PKNHLSFVDMLIDNKFKVDYLEKFKRYKQI 166


>gi|212639468|ref|YP_002315988.1| putative ATP-dependent endonuclease of the OLD family
           [Anoxybacillus flavithermus WK1]
 gi|212560948|gb|ACJ34003.1| Predicted ATP-dependent endonuclease of the OLD family
           [Anoxybacillus flavithermus WK1]
          Length = 569

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 64/381 (16%), Positives = 140/381 (36%), Gaps = 42/381 (11%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++   +++ ++ +  +  + F      I  G N  GK+ ILEAI+         +A   
Sbjct: 1   MRLIKFSVTNYKVFEKTFTIEFSKDSIVILTGRNNTGKSTILEAINCFFQKES--KAKTI 58

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                           V   +    I+I  + +D  + R    ND+ I+   EL   L  
Sbjct: 59  PSDCFSKRDKEIVLEAVFESDDENKITIVKKYKDGATPRFFDENDIEIKNNHELKDTLSK 118

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
                  ++ F          ++ ++  I          +  +++  N L      +   
Sbjct: 119 IL----DNKPFYITPYMLPDDINELIQNI----------YSEIIK--NDLEKLEELNEDN 162

Query: 183 CSSIE-AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
               E  ++A    KI  +  E +  L S   +         + + +T  L   F     
Sbjct: 163 ELEKEMRELASEYNKIKKSYPEFLKKLKSNTDKI-----LEQVSMDVTNHLQTLFGNDHL 217

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA-ITIAHGSTGEQKVVLVGIF 300
           +LK    +   +G  ++ + + T      S + V   +K  + +++  TG Q++ L+ + 
Sbjct: 218 SLKVIGGET--EGFSVNDILKST-----NSRINVSSKNKPDMPLSNQGTGLQRMSLIYLI 270

Query: 301 --LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDKSVFDS 357
             +   +++        +LL+DE  A L  +   AL + +  IG ++  M  T   +   
Sbjct: 271 QNMIEKKMLGQ--NENKLLLIDEPEAFLHPEAVRALSQSLYKIGQRMPLMISTHSPILID 328

Query: 358 LNETA---KFMRISNHQALCI 375
           L+E     +  R++  +A+ +
Sbjct: 329 LSERHTSIQVFRVNEEEAIQL 349


>gi|206900488|ref|YP_002250767.1| DNA repair protein RecN [Dictyoglomus thermophilum H-6-12]
 gi|206739591|gb|ACI18649.1| DNA repair protein RecN [Dictyoglomus thermophilum H-6-12]
          Length = 580

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L + +F     + L F     +  G+ G GK+ +++A++FL    G R ++   + R
Sbjct: 2   LLALRVKDFAIIDEITLDFHDGFNVITGETGAGKSLLVDAVAFLL---GERASTD--IIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            GS      + F+    VE +    DI  + +     S    +      RV  EL
Sbjct: 57  SGSNRTLVEAMFTMNEEVERLLDEWDIPKEKDGTLLVSRELNKNGRSKCRVNGEL 111


>gi|146413475|ref|XP_001482708.1| hypothetical protein PGUG_04663 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1210

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F+ Y +  ++      H + VG NG GK+N   AI   LS          
Sbjct: 1   MHIKRIVIQGFKTYKNATVIDLLSPHHNVVVGRNGSGKSNFFAAIRFVLSDAYTHMEREE 60

Query: 62  AD-VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
              +   G+ +  S +  +        + I  +    R    L+ +D
Sbjct: 61  RQGLIHEGNGTVMSAYVEIIFDNTDRRLPISKDEVAVRRTIGLKKDD 107



 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 279  DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            D+   I   S G++ +  + + LA           AP  L DEI A+LD   R A+  ++
Sbjct: 1102 DEQQRIEQLSGGQKSLCAIALILA-----IQKCDPAPFYLFDEIDANLDTQYRTAVASMI 1156

Query: 339  T--DIGSQIFMTGTDKSVFDSLNETAKFMRI 367
                 G+Q   T       + L    KF  I
Sbjct: 1157 NVLSKGAQFICTT---FRPEMLQVADKFFGI 1184


>gi|54308988|ref|YP_130008.1| hypothetical protein PBPRA1801 [Photobacterium profundum SS9]
 gi|46913418|emb|CAG20206.1| hypothetical protein PBPRA1801 [Photobacterium profundum SS9]
          Length = 633

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          +++K + ISE++N     L F       +FVG NG GK+N +EA+
Sbjct: 1  MRLKSVYISEYKNLNGFTLDFSQDSFLEVFVGKNGSGKSNFIEAL 45


>gi|219666714|ref|YP_002457149.1| ATPase AAA [Desulfitobacterium hafniense DCB-2]
 gi|219536974|gb|ACL18713.1| AAA ATPase [Desulfitobacterium hafniense DCB-2]
          Length = 340

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 24/44 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          + +K + +  F  +  + + F     + +G+NG GKT+I++ + 
Sbjct: 1  MALKKICLENFTVFDKMEIEFCDGVNVLIGENGTGKTHIMKLLY 44


>gi|306839230|ref|ZP_07472047.1| DNA repair protein RecN [Brucella sp. NF 2653]
 gi|306405777|gb|EFM62039.1| DNA repair protein RecN [Brucella sp. NF 2653]
          Length = 559

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L + F +  ++  G+ G GK+ +L+++S     RG      A + R
Sbjct: 2   LSHLSIRDIVLIERLDIEFRSGLSVLTGETGAGKSILLDSLSLALGARG-----DASLVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRV 112
            G+                   F R  G +   DI ++     D   R    +    + +
Sbjct: 57  HGADQGQVTAVFDVPGNHPARLFLRENGFDDDGDIILRRLQMGDGRTRVFINDQAASVAL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMR 167
           + +L + L           +    +   R  LD          +     +   D E  + 
Sbjct: 117 LRDLGRRLVEIHGQHDDRALI--DTDLHRTLLDAFGGLDAQAMLVRERHKAWRDAESALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
                + +   +  +  S   ++ +L
Sbjct: 175 KHRARVEQAEREGDYLRSSVEELTKL 200


>gi|270159077|ref|ZP_06187733.1| chromosome partition protein SMC [Legionella longbeachae D-4968]
 gi|289166087|ref|YP_003456225.1| chromosome partition protein smc [Legionella longbeachae NSW150]
 gi|269987416|gb|EEZ93671.1| chromosome partition protein SMC [Legionella longbeachae D-4968]
 gi|288859260|emb|CBJ13194.1| putative chromosome partition protein smc [Legionella longbeachae
          NSW150]
          Length = 1164

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +K L ++ F+++     + F +Q    VG NG GK+NI++A+ ++   S  R  R  S
Sbjct: 1  MHLKQLKLAGFKSFVDPTVVHFPSQLVAVVGPNGCGKSNIIDAVRWVMGESSARNLRGES 60

Query: 61 YADVTRIGSPS 71
            DV   GS  
Sbjct: 61 MTDVIFNGSSH 71


>gi|251778334|ref|ZP_04821254.1| conserved hypothetical protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
 gi|243082649|gb|EES48539.1| conserved hypothetical protein [Clostridium botulinum E1 str.
          'BoNT E Beluga']
          Length = 573

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KIK + I  FR+    +  F   +T+  G N VGKTN++ A+   
Sbjct: 1  MKIKSVTIHNFRSIKDGKFDFKD-YTLLTGKNNVGKTNVMSALRIF 45


>gi|160331189|ref|XP_001712302.1| smc2 [Hemiselmis andersenii]
 gi|159765749|gb|ABW97977.1| smc2 [Hemiselmis andersenii]
          Length = 1071

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 7  IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASY 61
          IK + I  F++Y   ++    D       G NG GK+N L++I F   LS     R +  
Sbjct: 4  IKEIIIDGFKSYGLKTVFTNLDPTFNSITGINGSGKSNFLDSICFVLGLSNLSVIRASKL 63

Query: 62 ADVTRIGSP 70
           D+      
Sbjct: 64 QDLIFQNEK 72


>gi|330978667|gb|EGH77948.1| SMC domain-containing protein [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 576

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 75/450 (16%), Positives = 136/450 (30%), Gaps = 97/450 (21%)

Query: 5   IKIKFLNI--------SEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI------- 47
           +++  L I         +F+N  ++ + FD     T+ +G NG GK+N+LEA+       
Sbjct: 1   MRLDKLTIGSAKDSPTHQFKNLKNVTIDFDQDHWVTVVIGWNGTGKSNVLEALAIIFRDL 60

Query: 48  --------------SFLSPGRGFRR-ASYADVTRIGSPS--FFSTFARVEGMEGLADISI 90
                           +  G G R     AD  R   P     +T A   G   L     
Sbjct: 61  IGKERMPAFAFKLAYRMGTGEGVRHIHIDADPDRENEPLIIHVATDAEARGEGTLTPFIE 120

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNKHL----------RISWLVP----SMDRIFSG- 135
             E       + +++   +    + L +++                P       ++ +G 
Sbjct: 121 GEEAASALRGKAIKLTAFLKADAESLPRYVFSYYSGESTRMYEVFSPYLESYDSKLRNGI 180

Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG---------------------RNRLLT 174
               +R F    V          MI    ++R                      R     
Sbjct: 181 DPGLKRLFYAMPV-HSQFVLLAFMIQQSDVVRAFLDDHLGIDPDDGIESVLFVLRQPPWK 239

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
               D        A+     V+  ++R+  I      I   V    +   KL        
Sbjct: 240 SKAPDGD-PRFWNARGV---VRDFLSRLHDIALAPIEISRQVSTSIWNKTKLQFKYL--- 292

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY--CDKAITIAHGSTGEQ 292
            + +   AL+     +       D  S           + +     D ++T    S GEQ
Sbjct: 293 -YVKDIAALRRLVGNQAPAQFFRDLESTYVSELIEEVRIRIRLKKNDGSVTFRELSEGEQ 351

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE----DKRNALFRIVTDIGSQ---- 344
           +++ V        L+  T     + LLDE   HL+     D  + L + + +   Q    
Sbjct: 352 QLLTV------LGLLRFTAEDESLFLLDEPDTHLNPRWSVDYISYLKQFIANGTKQEETS 405

Query: 345 -IFMTGTDKSVFDSLN-ETAKFMRISNHQA 372
            I +T  +      L+ E  + +R+S  + 
Sbjct: 406 HILLTTHNPLAVAELDREQVQILRMSKQEG 435


>gi|320032397|gb|EFW14350.1| cohesin complex subunit Psm1 [Coccidioides posadasii str.
          Silveira]
          Length = 1261

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|238880690|gb|EEQ44328.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1198

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F+ Y +   +        + VG NG GK+N   AI   LS          
Sbjct: 1   MHIKKIIIQGFKTYKNTTTIDLLSPHCNVVVGRNGSGKSNFFAAIRFVLSDAYTHMSREE 60

Query: 62  AD-VTRIGSPSFFSTFARV-----EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
              +   GS +  S +  +     +G   +    I +            ++       D
Sbjct: 61  RQGLIHEGSGTVMSAYVEIIFDNTDGRFPINKPEISIRRTIGLKKDDYSLDGKSATRSD 119


>gi|163738729|ref|ZP_02146143.1| DNA repair protein RecN [Phaeobacter gallaeciensis BS107]
 gi|161388057|gb|EDQ12412.1| DNA repair protein RecN [Phaeobacter gallaeciensis BS107]
          Length = 548

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 83/284 (29%), Gaps = 36/284 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRALDIRDILIIDHLELNFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGS------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--V 112
            G+            P   +     E      D  +          +   +ND      V
Sbjct: 57  QGAKQGEVLAEFDLTPEHPAHAVLAEAGLPGGDTLLLRRVNTAEGRKTAWVNDRRCSGEV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM-----VFAIDPRHRRRMIDFERLMR 167
           +  L+  L           + +      R  LD       + A             + + 
Sbjct: 117 LRALSDTLLELHGQHDDRGLLN--PRGHRAMLDEFAGLGDMLASVRDLWATASRARKAVE 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL------GVKINIARVEM--INALSSLIMEY--VQ 217
                L     +  +     A++  L         ++  R EM     +   I     + 
Sbjct: 175 ETRSALEAIRAEEDFLRHAVAELDALDPQPGEDAALDQRRREMQSAERIRGDIQRAQGIL 234

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            +           +L+G  DQ+  AL    A  L    ++    
Sbjct: 235 ADGAEAALGDAQRWLEGVSDQAENALDAPIAALLRAMIELGEAQ 278


>gi|68471573|ref|XP_720093.1| potential nuclear cohesin complex SMC ATPase [Candida albicans
           SC5314]
 gi|46441945|gb|EAL01238.1| potential nuclear cohesin complex SMC ATPase [Candida albicans
           SC5314]
          Length = 1240

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F+ Y +   +        + VG NG GK+N   AI   LS          
Sbjct: 1   MHIKKIIIQGFKTYKNTTTIDLLSPHCNVVVGRNGSGKSNFFAAIRFVLSDAYTHMSREE 60

Query: 62  AD-VTRIGSPSFFSTFARV-----EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
              +   GS +  S +  +     +G   +    I +            ++       D
Sbjct: 61  RQGLIHEGSGTVMSAYVEIIFDNTDGRFPINKPEISIRRTIGLKKDDYSLDGKSATRSD 119


>gi|319941125|ref|ZP_08015461.1| hypothetical protein HMPREF9464_00680 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805482|gb|EFW02284.1| hypothetical protein HMPREF9464_00680 [Sutterella wadsworthensis
           3_1_45B]
          Length = 527

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 8/155 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYADV 64
           IK L+I  F+ + +L + F+    I VG+N VGK+ IL+AI  +     +   ++   D+
Sbjct: 4   IKSLHIEGFKKFTNLDVEFNQYMNILVGENEVGKSTILDAIKLVLNQQYKNSDKSVLKDL 63

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                   F     ++ +   L +I ++L+T +  S+R         +   E    L   
Sbjct: 64  FNAKQIRDFECNPSIKTLPKILIEIELELDTSNRNSIRFFGEMHRDKQSHSEKFGILFKC 123

Query: 124 ----WLVPSMDRIFSGLSMERRRF-LDRMVFAIDP 153
                + P M+   +   +    + L    FA +P
Sbjct: 124 EYDENIDPDMEESINKGRIPYEYYSLTWTTFANNP 158


>gi|260574957|ref|ZP_05842959.1| chromosome segregation protein SMC [Rhodobacter sp. SW2]
 gi|259022962|gb|EEW26256.1| chromosome segregation protein SMC [Rhodobacter sp. SW2]
          Length = 1151

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/161 (21%), Positives = 60/161 (37%), Gaps = 24/161 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFARLRLNGFKSFVDPTDLVIHPGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G+      +F      ++  E LA         I++  R  R +    ++N  
Sbjct: 61  MEDVIFAGAATRPARNFAEVALVIDNAERLAPAGFNEADQIEIVRRITRDAGSAYKVNTR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERR 141
            +R  D   L          P++ R      + +     RR
Sbjct: 121 DVRARDVQMLFADASTGSHSPALVRQGQISELINARPKSRR 161


>gi|256824497|ref|YP_003148457.1| hypothetical protein Ksed_06300 [Kytococcus sedentarius DSM 20547]
 gi|256687890|gb|ACV05692.1| hypothetical protein Ksed_06300 [Kytococcus sedentarius DSM 20547]
          Length = 854

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 76/215 (35%), Gaps = 24/215 (11%)

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  + + L E    +    S     + +       R+ ++      ++  V         
Sbjct: 515 LAEKKKELVELEAAAELTKSWTLIESHVRDAKQADRLMLLAKPMPGLLRAVTGLAKTASD 574

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
             +    D  F +   AL+       F GR+  +  R+ L G H+               
Sbjct: 575 QMINESFDALFSEECAALRAPALHVEFVGRQGRAQRRKILSGKHK------------PSK 622

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--S 343
             S GEQKV+ +  FLA ARL     G    ++ D+  + LD  + N + + V  +   +
Sbjct: 623 VLSEGEQKVLAIADFLAEARL----AGITAPVIFDDPVSSLDHRRINEVAQRVASLADTT 678

Query: 344 QIFMTGTDKSVFDSLN------ETAKFMRISNHQA 372
           Q+ +   D     +L       +   + +I++ + 
Sbjct: 679 QVIVFTHDIFFASTLLTLMEATKRCSYFQITDEEG 713


>gi|195444278|ref|XP_002069794.1| GK11716 [Drosophila willistoni]
 gi|194165879|gb|EDW80780.1| GK11716 [Drosophila willistoni]
          Length = 1096

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL--EAISFLSPGRGF-RRASYA 62
           K+  + ++ F  +++  L F       VG NG GK+ ++   A+   S  R   R ++  
Sbjct: 72  KVISMRLTNFMCHSNFFLSFGPNINFLVGSNGSGKSAVITALALGLTSNARATNRASTIQ 131

Query: 63  DVTRIGSPSFFSTF-------ARVEGMEGLADISIKLETRDDRSVRCLQI--NDVVIRVV 113
            + R G  S             R +       I++    R   S   ++      V + +
Sbjct: 132 KLIRNGETSASIEITLSNIGSCRFKPDIYGPHITVVRHIRQSSSTYDMKDAHGKSVSKKL 191

Query: 114 DELNKHL 120
           DE+ + L
Sbjct: 192 DEIRRML 198


>gi|209550163|ref|YP_002282080.1| DNA repair protein RecN [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535919|gb|ACI55854.1| DNA repair protein RecN [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 557

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 99/299 (33%), Gaps = 43/299 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F+   ++  G+ G GK+ +L+++S    GRG        + R
Sbjct: 2   LIQLSIRDIVLIERLDLAFETGLSVLTGETGAGKSILLDSLSLALGGRG-----DGGLVR 56

Query: 67  IGS-------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G                   T  R  G++   D+  + +   D   +    +  V   +
Sbjct: 57  HGEDKGQVTAVFDVGMDHGARTLLRENGIDDEGDLIFRRQQSADGRTKAYVNDQPVSVQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRF-----LDRMVFAIDPRHRRRMIDFERLMRG 168
                 + +       DR     +  R        L   V  +   + R   D ER ++ 
Sbjct: 117 MRQAGQMLVEIHGQHDDRALVDTNAHRTLLDAFAGLTDEVSEVSRLY-RLWRDSERTLKK 175

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMI--NALSSLIMEYVQ--- 217
               +     ++ +  S   ++ +L        ++   R +M+    ++  I E  +   
Sbjct: 176 HREKVEGAAREADYLRSSVEELEKLSPQDGEEDELADRRQKMMKAERIAGDIAEASEFLN 235

Query: 218 --KENFPHI-----KLSLTGFLDGKFDQSFCALKEEYAKKLFDGR-KMDSMSRRTLIGP 268
                 PHI     +L           +    L +    +L + + ++++  R+T   P
Sbjct: 236 GNASPVPHIASLVRRLERKSHEAPGLLEDTVTLLDAALDQLSNAQMEVEAALRKTEYDP 294


>gi|167768646|ref|ZP_02440699.1| hypothetical protein CLOSS21_03205 [Clostridium sp. SS2/1]
 gi|167710170|gb|EDS20749.1| hypothetical protein CLOSS21_03205 [Clostridium sp. SS2/1]
          Length = 576

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +++I+ + I  FR+  S     + + T  VG+N  GKT +L AI
Sbjct: 2  QMRIEEVKIKNFRSIKSATFRMN-KITAVVGENNAGKTAVLRAI 44


>gi|92117524|ref|YP_577253.1| ATP-dependent OLD family endonuclease [Nitrobacter hamburgensis
          X14]
 gi|91800418|gb|ABE62793.1| ATP-dependent endonuclease of the OLD family-like protein
          [Nitrobacter hamburgensis X14]
          Length = 590

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I+ L+IS FR    L    D    + VG    GK+ +L AI+ L
Sbjct: 7  IRRLDISRFRCIEHLEWRPDQGVNVLVGGGDSGKSTVLHAIALL 50


>gi|83941571|ref|ZP_00954033.1| SMC protein [Sulfitobacter sp. EE-36]
 gi|83847391|gb|EAP85266.1| SMC protein [Sulfitobacter sp. EE-36]
          Length = 1151

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFSKLRLTGFKSFVDPTDLIISDGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             DV   G+ S     F      ++  E LA          +   R  +      +   +
Sbjct: 61  MEDVIFAGASSRPAKNFAEVALHIDNSERLAPAGFNDGDSIEIIRRITRDVGSAYKAAGK 120

Query: 116 LNKHLRISWL---------VPSMDR------IFSGLSMERRRFLD 145
             +   +  L          P++ R      + +     RRR L+
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKNRRRILE 165


>gi|322707182|gb|EFY98761.1| chromosome segregation protein SudA, putative [Metarhizium
          anisopliae ARSEF 23]
          Length = 1202

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +  + VG NG GK+N   A+ F
Sbjct: 1  MYIKQIIIQGFKSYKEQTVIEPFSPKTNVIVGRNGSGKSNFFAAMRF 47



 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 105/279 (37%), Gaps = 25/279 (8%)

Query: 80   EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS-----MDRIFS 134
            +  +   ++S ++E +  R  + +Q   ++     E  K++R   ++P       + + +
Sbjct: 894  QREQRQNELSTRIEKQQKRMEKTMQRKALLTTQAAECAKNIRELGVLPEEAFDKYENMEA 953

Query: 135  GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
                 + + ++  +      +++    +      +++L+       +   SIE    EL 
Sbjct: 954  NTITNKLKRVNEALKKYKHVNKKAFEQYNNFTTQQDQLMKRRKELDASQDSIE----ELV 1009

Query: 195  VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
              ++  + E I      + +      F  I   L     G+      A + +  ++  + 
Sbjct: 1010 EHLDRRKDEAIERTFKQVSK-----EFATIFGKLVPAGHGRLVIQRRADRRQEPEE-SEE 1063

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
                S+   T +G   S     + D+   I   S G++ +  + +  A        T  +
Sbjct: 1064 EARGSVENYTGVGISVS-FNSKHLDEQQRIQQLSGGQKSLCALCLIFAL-----QQTESS 1117

Query: 315  PILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
            P+++ DE+ A+LD   R A+  ++     + G+Q   T 
Sbjct: 1118 PMVIFDEVDANLDAQYRTAVAALLESISNEAGTQFICTT 1156


>gi|312888760|ref|ZP_07748324.1| chromosome segregation protein SMC [Mucilaginibacter paludis DSM
          18603]
 gi|311298760|gb|EFQ75865.1| chromosome segregation protein SMC [Mucilaginibacter paludis DSM
          18603]
          Length = 1180

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          +++  L +  F+++   + + F+   T  VG NG GK+N++++I ++   +     R   
Sbjct: 1  MQLTRLEVKGFKSFGDKITINFNEGITAIVGPNGCGKSNVVDSIRWVLGEQSTRMLRSEK 60

Query: 61 YADVTRIGSPS 71
            +V   GS S
Sbjct: 61 MENVIFNGSKS 71


>gi|163744557|ref|ZP_02151917.1| hypothetical protein OIHEL45_03200 [Oceanibulbus indolifex HEL-45]
 gi|161381375|gb|EDQ05784.1| hypothetical protein OIHEL45_03200 [Oceanibulbus indolifex HEL-45]
          Length = 660

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 63/394 (15%), Positives = 117/394 (29%), Gaps = 59/394 (14%)

Query: 5   IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61
           ++I+ + +S FR +    + +   ++ T  VG N  GKT +L A+S      R  R    
Sbjct: 1   MRIESVTLSGFRCFGPDPITVPIASEITAVVGPNAAGKTALLHALSKLFGVSRAQRTVER 60

Query: 62  ADV---TRIGSPSFFSTFARVEGMEGLADI--SIKLETRDDRSVRCLQINDVVIRVVDEL 116
           +D                  ++ M GL ++            S R +QI       V  L
Sbjct: 61  SDFHLGVDDDPEDREPKDLFIDVMIGLPELADGTATPETIAPSFRHMQIARAGDAPVCRL 120

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
               R        D    G   +   ++D +    DP       D    +   +R L + 
Sbjct: 121 RLEARW-----EDDGTVEGEVSQDLFWVDTL--DDDPG-----EDKCHPVSAADRGLVQL 168

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
           Y+  +   +          +I      +   L   I      E    ++ +         
Sbjct: 169 YYTPASRDA--------AAQIKATTGALAARLLRAIE--WSSETTEAVEEASEDLAAAFE 218

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR-------SDLIVDYCDKAITIAHG-- 287
           ++S  A   E  +K +     D +  +  +           S + V +         G  
Sbjct: 219 EESAIAAIVEALQKRWSSLHDDIVDTKPRLSLVSRRFEEVVSKIAVIFEQGPDGQERGLD 278

Query: 288 --STGEQKVVLVGIFLAHARLISNTTGFA--------------PILLLDEISAHLDEDKR 331
             S G+Q +    +  A   L                       +  L+E   HL     
Sbjct: 279 ALSDGQQSLFYFALAAAVFDLEREVVAGTVEGFRDDTLRIPALTLFALEEPENHLSPYFL 338

Query: 332 NALFRIVTDI----GSQIFMTGTDKSVFDSLNET 361
             + R V  +    G+Q  +T    +V   ++  
Sbjct: 339 ARIIRQVRSLTDTSGAQAIVTSHSPAVLSRVDPR 372


>gi|156974540|ref|YP_001445447.1| hypothetical protein VIBHAR_02258 [Vibrio harveyi ATCC BAA-1116]
 gi|156526134|gb|ABU71220.1| hypothetical protein VIBHAR_02258 [Vibrio harveyi ATCC BAA-1116]
          Length = 626

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + IS FR+     +    + T  VG N  GK+N+L A++    G+     + A+   
Sbjct: 2   IRQITISNFRSIRKETIS-AEEITTLVGKNDAGKSNLLRALNLFFNGK-----TDAE-QA 54

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
               + F+  A V+      +I ++L  +  RS R 
Sbjct: 55  FDFKADFNINATVQ-QRKAKEIVVELVLKLPRSYRK 89


>gi|322698449|gb|EFY90219.1| chromosome segregation protein SudA, putative [Metarhizium
          acridum CQMa 102]
          Length = 1202

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F  +  + VG NG GK+N   A+ F
Sbjct: 1  MYIKQIIIQGFKSYKEQTVIEPFSPKTNVIVGRNGSGKSNFFAAMRF 47



 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 105/279 (37%), Gaps = 25/279 (8%)

Query: 80   EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS-----MDRIFS 134
            +  +   ++S ++E +  R  + +Q   ++     E  K++R   ++P       + + +
Sbjct: 894  QREQRQNELSTRIEKQQKRMEKTMQRKALLTTQAAECAKNIRDLGVLPEEAFDKYENMEA 953

Query: 135  GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
                 + + ++  +      +++    +      +++L+       +   SIE    EL 
Sbjct: 954  NTITNKLKRVNEALKKYKHVNKKAFEQYNNFTTQQDQLMKRRKELDASQDSIE----ELV 1009

Query: 195  VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
              ++  + E I      + +      F  I   L     G+      A + +  ++  + 
Sbjct: 1010 EHLDRRKDEAIERTFKQVSK-----EFATIFGKLVPAGHGRLVIQRRADRRQEPEE-SEE 1063

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
                S+   T +G   S     + D+   I   S G++ +  + +  A        T  +
Sbjct: 1064 EARGSVENYTGVGISVS-FNSKHLDEQQRIQQLSGGQKSLCALCLIFAL-----QQTESS 1117

Query: 315  PILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
            P+++ DE+ A+LD   R A+  ++     + G+Q   T 
Sbjct: 1118 PMVIFDEVDANLDAQYRTAVAALLKSISNEAGTQFICTT 1156


>gi|313898508|ref|ZP_07832045.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312956890|gb|EFR38521.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 670

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
           +++  + I  +R      L  + + T+ VG N   KT+  E I
Sbjct: 8  NMQLSKIKIKNYRLLIDAELEVEPKTTLIVGRNNTAKTSCFECI 51


>gi|303316059|ref|XP_003068034.1| SMC family, C-terminal domain containing protein [Coccidioides
          posadasii C735 delta SOWgp]
 gi|240107710|gb|EER25889.1| SMC family, C-terminal domain containing protein [Coccidioides
          posadasii C735 delta SOWgp]
          Length = 1286

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|157375862|ref|YP_001474462.1| ATP-dependent OLD family endonuclease [Shewanella sediminis
          HAW-EB3]
 gi|157318236|gb|ABV37334.1| ATP-dependent endonuclease of the OLD family [Shewanella
          sediminis HAW-EB3]
          Length = 607

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +K+K L I+ FR      +  +   T  VG N +GK+ IL AI  
Sbjct: 1  MKLKKLIINNFRGIGFAEIDLE-NFTTLVGPNNIGKSTILNAIHL 44


>gi|46124753|ref|XP_386930.1| hypothetical protein FG06754.1 [Gibberella zeae PH-1]
          Length = 1202

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 103/287 (35%), Gaps = 34/287 (11%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS-----MDRI 132
            R +  +   +IS ++E +  R  + L+   V+     E  + +R   ++P       + +
Sbjct: 892  RAQREQAQQEISARIEKQQKRMDKSLRRKAVLTTQAAECAQTIRDLGVLPEEAFDKYENM 951

Query: 133  FSGLSMERRRFL-----DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
                +   R  L     +  +  ++ +       +      +++L+           SIE
Sbjct: 952  DPKTASFPRHGLAKANTNMSLGHVNKK---AFEQYNNFTTQQDQLMKRRKELDESQESIE 1008

Query: 188  AQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEE 246
              +  L  + + A       +S        K     H +L +    D + + +  +    
Sbjct: 1009 ELVEHLDRRKDEAIERTFKQVSREFTTIFGKLVPAGHGRLLIQRRADRRQEPTDES---- 1064

Query: 247  YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
                  DG    ++   T +G   S     + D+   I   S G++ +  + +  A    
Sbjct: 1065 ------DGEARGAVENYTGVGISVS-FNSKHLDEQQKIQQLSGGQKSLCALCLIFAL--- 1114

Query: 307  ISNTTGFAPILLLDEISAHLDEDKRNALFRIV----TDIGSQIFMTG 349
                T  +P+++ DE+ A+LD   R A+  ++     +IG+Q   T 
Sbjct: 1115 --QATESSPMVIFDEVDANLDAQYRTAVAALLDSISNEIGTQFICTT 1159



 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F ++  + VG NG GK+N   AI F
Sbjct: 1  MYIKQIIIQGFKSYKDQTVIEPFSSKTNVIVGRNGSGKSNFFAAIRF 47


>gi|323466050|gb|ADX69737.1| DNA repair ATPase [Lactobacillus helveticus H10]
          Length = 833

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 85/219 (38%), Gaps = 27/219 (12%)

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMINALSSLIME 214
           +++     L  +    +    +++AQ+A+L            +  A+ E+ N  ++ +  
Sbjct: 620 KVLTQLQNLAAQATDTTKEIDALQAQVAKLQVQLENLADSTAVFEAKQELANTETNFVNS 679

Query: 215 YVQKENFPHIKLS--LTGFLDGKFDQSFCAL---KEEYAKKLFDGRKMDSMSRRTLIGPH 269
              +E   ++ +S  ++  LD   ++ F  +    +EY   L  GR +D +  + L    
Sbjct: 680 --SQEYLANLVVSRWISRSLDLASNERFPKMLSAAKEYFALLTGGRYVDIILDKKLTVTR 737

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           +         K   + + S G  + +   + LA    I +       +L+D+   + D+ 
Sbjct: 738 KD-------GKKREVKYLSRGTAEQLYFALKLAFIEQIKDKINLP--ILIDDSFVNFDDH 788

Query: 330 KRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMR 366
           +   + +++  +   +Q+ +    + + D L  +     
Sbjct: 789 RIGYIKKLLEKVSENNQVLIFTAQEKLVDQLEISPLTFT 827



 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 81/250 (32%), Gaps = 31/250 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +++K + I  F  +++        Q  +F G N  GK+  +  I  +  G   R  +   
Sbjct: 1   MRLKQIKIVNFGQFSNKTFDLPSDQINVFFGANEAGKSTTVAFIKQVMFGFHLRSNASPF 60

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  + SP   S     +  E   +       +  R +  ++ +  V+      +
Sbjct: 61  FEDYTPLAHV-SPMGGSLVFENDDSEYELERLYAKGDKTKRGILTVKKDGQVVPENLFFD 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR-------- 169
           +   I     +   IF+   + +   L +    ++  +     +  +L++ R        
Sbjct: 120 QIQNIDGSFYADSFIFNQEMLGQVTSLSQEDL-LERIYYLGAANSGQLLKLRDDFAKEAG 178

Query: 170 ------------NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
                       NRLL +   D    +  +A+ ++   K+     +  + L     + + 
Sbjct: 179 KLFKKTGKKPEVNRLLKQIETDRDQLAQTKAEFSDY-EKLAQDLKDYKDRLRK-AQKALA 236

Query: 218 KENFPHIKLS 227
                   L 
Sbjct: 237 NIQNKQASLH 246


>gi|253583564|ref|ZP_04860762.1| chromosome partition protein smc [Fusobacterium varium ATCC
          27725]
 gi|251834136|gb|EES62699.1| chromosome partition protein smc [Fusobacterium varium ATCC
          27725]
          Length = 1172

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          + +K + I  F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++     +
Sbjct: 1  MYLKAVEIFGFKSFGEKVYIEFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60


>gi|170759346|ref|YP_001787291.1| hypothetical protein CLK_1353 [Clostridium botulinum A3 str. Loch
          Maree]
 gi|169406335|gb|ACA54746.1| conserved hypothetical protein [Clostridium botulinum A3 str.
          Loch Maree]
          Length = 645

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M N I +K L++  F+    L + F     IF G+NG GKT I ++ +FL
Sbjct: 1  MVNSIFLKNLSLKNFKGIKDLTIDFGKVTNIF-GENGTGKTTIQDSFTFL 49


>gi|222478962|ref|YP_002565199.1| chromosome segregation protein SMC [Halorubrum lacusprofundi ATCC
          49239]
 gi|222451864|gb|ACM56129.1| chromosome segregation protein SMC [Halorubrum lacusprofundi ATCC
          49239]
          Length = 1193

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  + +  F+++  + R+ F    T+  G NG GK+NI++ + F   L+  RG R   
Sbjct: 1  MHITEVVLDGFKSFGRTTRIPFYDDFTVVTGPNGSGKSNIIDGVLFALGLARTRGIRAKK 60

Query: 61 YADVT 65
            D+ 
Sbjct: 61 LTDLI 65


>gi|78045686|ref|YP_361861.1| hypothetical protein XCV0130 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034116|emb|CAJ21761.1| conserved hypothetical protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 558

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 6/142 (4%)

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
           +   +    Q            L       S   R+  G     L ++           S
Sbjct: 251 SELAEKVVSQELADALNREFAALKVNALRVSTQSRSERGKPLHRLRLELPQSRTPSEILS 310

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIF 346
            GEQ+ + +  FLA   L     G    ++ D+    LD  +R  + + +    +  Q+ 
Sbjct: 311 EGEQRAIAIASFLAEISL----NGQTSGIIFDDPVCSLDHRRRELVAKRLVQEAAKRQVI 366

Query: 347 MTGTDKSVFDSLNETAKFMRIS 368
           +   D      L +  K + +S
Sbjct: 367 VFTHDLYFLKLLADDGKRLGVS 388


>gi|94309943|ref|YP_583153.1| DNA repair protein RecN [Cupriavidus metallidurans CH34]
 gi|93353795|gb|ABF07884.1| recombination and repair protein [Cupriavidus metallidurans CH34]
          Length = 589

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 27/207 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +L L F A  T+F G+ G GK+ +++A++ +   R     + A V R
Sbjct: 2   LRSLSIRDFVIVDTLDLDFSAGFTVFTGETGAGKSILIDALALVLGER-----ADAGVVR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQ-----------INDVVI 110
            G+        F T + ++      ++S  +E  D  +V   +           IN    
Sbjct: 57  EGAARASISATFHTHSALDAWLAERELSSDMEDDDGGTVLLRRTVDASGRSKAFINGAAA 116

Query: 111 --RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH--RRRMIDFERLM 166
               + E+   L       +   +       +R+  D      +           +   +
Sbjct: 117 TLAQLREVGDQLVDIHGQHAHQLLLR--PDAQRQLFDAHAGLTEQSAAVAEAWRVWRACV 174

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           + R  +  +          +E Q+ EL
Sbjct: 175 KQREAVEHQSREMQLERERLEWQVGEL 201


>gi|332283844|ref|YP_004415755.1| ATP-dependent OLD family endonuclease [Pusillimonas sp. T7-7]
 gi|330427797|gb|AEC19131.1| ATP-dependent OLD family endonuclease [Pusillimonas sp. T7-7]
          Length = 626

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++++ ++I  FR Y     V     T FVG N +GK++ILEA+   
Sbjct: 20 MRLESVSIKNFRCYREETTVSMVDLTTFVGKNDIGKSSILEALEIF 65


>gi|254486515|ref|ZP_05099720.1| chromosome segregation protein SMC [Roseobacter sp. GAI101]
 gi|214043384|gb|EEB84022.1| chromosome segregation protein SMC [Roseobacter sp. GAI101]
          Length = 1156

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 74/226 (32%), Gaps = 30/226 (13%)

Query: 3   NRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRR 58
           + ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R 
Sbjct: 4   HGLRFSKLRLTGFKSFVDPTDLVIADGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRG 63

Query: 59  ASYADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
               DV   G+      +F      ++  E LA        + +   R  +      +  
Sbjct: 64  GGMEDVIFAGAATRPARNFAEVALHIDNTERLAPAGFNDTDQIEIIRRITRDVGSAYKAA 123

Query: 114 DELNKHLRISWL---------VPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRR 158
            +  +   +  L          P++ R      + +     RRR L+     I   +   
Sbjct: 124 GKDVRARDVQMLFADASTGSHSPALVRQGQISELINAKPKNRRRILE-EAAGISGLYA-- 180

Query: 159 MIDFERLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARV 202
               E  ++           D      S+  +Q+A    +    R 
Sbjct: 181 -RRHEAELKLNGAEANLARVDDVVDQLSTQLSQLARQARQAAKYRE 225


>gi|254303024|ref|ZP_04970382.1| chromosome segregation ATPase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323216|gb|EDK88466.1| chromosome segregation ATPase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 1183

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           + +K + I+ F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++      
Sbjct: 1   MYLKAVEINGFKSFGDKVYIDFNRGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60

Query: 63  --DVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             DV   G      +T A V  +   +D  + L+    +  R + I+  
Sbjct: 61  SQDVIFSGGKEKKPATKAEVSLIIDNSDRYLDLDNDTVKITRRIHISGE 109


>gi|311694424|gb|ADP97297.1| chromosome segregation protein SMC [marine bacterium HP15]
          Length = 1164

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + +S F+++     + F +  T  VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLSGFKSFVDPTTVPFPSNMTAVVGPNGCGKSNIIDAVRWVMGESSAKYLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGLADI------SIKLETRDDRSVRC-LQINDV 108
             DV   GS +       S     +  +G A         I +  R  R  +    +N  
Sbjct: 61  MTDVIFNGSSARKPVGQASIELVFDNSDGSAPGEFVKFNEISVRRRVSREGQSEYFLNGS 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 KCRRRD 126



 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 51/366 (13%), Positives = 113/366 (30%), Gaps = 60/366 (16%)

Query: 59   ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
                D          +  ++ +G+    D   +++ + +R    L+I        +E  +
Sbjct: 792  RHDRDHAHQLQLQLQTLHSQRDGLRQTID---RMQLQKERIDERLEILRESRESAEEPIE 848

Query: 119  HLRISWLVPSMDRIFS----GLSMERRRFLDRMV-------FAIDPRHRRRMIDFERLMR 167
             L++        R+      G + +    +DR V          D R +      E+L  
Sbjct: 849  DLQMQLEGLLDRRLAEEEKLGAARDALEEIDREVREKEQGRSGTDHRIQEVRSRLEKLKM 908

Query: 168  GRNRLLTEGYFDSSWCSSIEAQMAELGVKI-----NIARVEMINALSSLIMEYVQKENFP 222
                L             ++ ++ ++  ++          + +  + + I          
Sbjct: 909  ESQALEIRSGNHVDQLKELDVKLQDILAQLPEGANEKDWADELERIGNRIQRLGAINLAA 968

Query: 223  HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT------------------ 264
              +  +        D     L E         RK+D  +R+                   
Sbjct: 969  IEEYQVQSERKTYLDSQHEDLMEALETLDNAIRKIDRETRQRFKETFDQVNGGLQALFPK 1028

Query: 265  LIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            + G   + L +   D               K  TI   S GE+ +  + +  +  +L   
Sbjct: 1029 VFGGGNAYLELTGEDLLETGVAIMARPPGKKNSTIHLLSGGEKALTAIALVFSIFQL--- 1085

Query: 310  TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDKSVFDSLNETAKFMRIS 368
                AP  +LDE+ A LD+        +V ++  Q+ F+  T   +   + +  + M ++
Sbjct: 1086 --NPAPFCMLDEVDAPLDDANVGRYANMVKEMSKQVQFIYITHNKIAMEMAD--QLMGVT 1141

Query: 369  NHQALC 374
             H+  C
Sbjct: 1142 MHEPGC 1147


>gi|306844320|ref|ZP_07476912.1| DNA repair protein RecN [Brucella sp. BO1]
 gi|306275392|gb|EFM57133.1| DNA repair protein RecN [Brucella sp. BO1]
          Length = 559

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L + F +  ++  G+ G GK+ +L+++S     RG      A + R
Sbjct: 2   LSHLSIRDIVLIERLDIEFRSGLSVLTGETGAGKSILLDSLSLALGARG-----DASLVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRV 112
            G+                   F R  G +   DI ++     D   R    +    + +
Sbjct: 57  HGADQGQVTAVFDVPGNHPARLFLRENGFDDDGDIILRRLQMGDGRTRVFINDQAASVAL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA-----IDPRHRRRMIDFERLMR 167
           + +L K L           +    +   R  LD          +     +   D E  + 
Sbjct: 117 LRDLGKRLVEIHGQHDDRALI--DTDLHRTLLDAFGGLDAQAVLVRERHKAWRDAESALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
                + +   +  +  S   ++ +L
Sbjct: 175 KHRARVEQAEREGDYLRSSVEELTKL 200


>gi|295108287|emb|CBL22240.1| DNA replication and repair protein RecN [Ruminococcus obeum A2-162]
          Length = 563

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 21/121 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + ++ L +        + + F     I  G+ G GK+ +L ++  +  GR      
Sbjct: 1   MLVHLHVRNLAL-----IEDIEVEFGPGLNILTGETGAGKSILLGSMQLILGGRS----- 50

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADI-SIKLETRDDR---------SVRCLQINDVV 109
             D+ R G+  +      +VE     A +  + +ET + +              +IN   
Sbjct: 51  AKDMIRTGASNALVELLFQVENPRAEASLRELGVETSEGQVLLTRKLMDGRSINKINGET 110

Query: 110 I 110
            
Sbjct: 111 C 111


>gi|190358624|ref|NP_001121806.1| structural maintenance of chromosomes protein 6 [Danio rerio]
 gi|148725618|emb|CAN88051.1| novel protein similar to vertebrate structural maintenance of
           chromosomes 6 (SMC6) [Danio rerio]
          Length = 1090

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 95/291 (32%), Gaps = 40/291 (13%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ +++  F  ++ L    F       VG+NG GK+ +L A+     G+     R +S  
Sbjct: 52  IESISLRNFMCHSLLGPFAFGPNVNFVVGNNGSGKSAVLTALIVALGGKALTTNRGSSLK 111

Query: 63  DVTRIGSPSF-FSTFARVEGME--------GLADISIKLETRDDRSVR-CLQINDVVIRV 112
              + G  S   S   R  G +            + +++ +   R+ +       +V   
Sbjct: 112 GFVKEGESSADVSITLRNRGRDAYKPEKFGQSIVVDLRISSEGIRTYKLKSHTGQLVSAK 171

Query: 113 VDELNKHL---------RISWLVPSMDRIF---SGLSMERRRFLD-RMVFAIDPRHRRRM 159
            +EL   L          +S L   M + F    G   + + F+    +  +   +   M
Sbjct: 172 KEELVSILDHFNIQVDNPVSILTQEMSKHFLHSKGEGDKYKFFMKATQLDQMKEDYSYIM 231

Query: 160 -------IDFERL------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
                     E+       ++ + R   E Y   +    ++ ++ EL  ++  A V  + 
Sbjct: 232 KTKTLTQNTVEKHRETLLELKQKFRDKEERYKSLASLDEMQQKLNELKNQMAWALVAEME 291

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
                + E +  E    +K                 + ++   +L    + 
Sbjct: 292 QEMKPMKEQITAEERSTVKYDQKVEEWKGKVDEANKISKQLQDQLESVSER 342


>gi|42502|emb|CAA78294.1| hypothetical ATP binding protein [Escherichia coli]
          Length = 492

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 68/412 (16%), Positives = 137/412 (33%), Gaps = 62/412 (15%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHT--IFVGDNGVGKTNILEAISFLSPGRGFR--- 57
            ++++  +++  ++ + SL + F  +    I VG+NG GK+ IL+AI         R   
Sbjct: 59  GQLRVADIHLENYKGFESLIMDFSMKKNSTILVGNNGCGKSTILDAIQKGLTHLSSRLST 118

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           R+   D            +A +        I   +           +        ++EL 
Sbjct: 119 RSHNGDGIEKHELRKGQNYASIAINYDYMGIRFPMIIATTEPGYEDRA-KSNYSGINELG 177

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP----RHRRRMIDFERLMRGRNRLL 173
              + +  +               R  D     I+     +  +    F+      N+ L
Sbjct: 178 SIFKTAHSINPNVSFPLIAMYTVERANDVSTRDIENSEEIKEAQIWDKFKAY----NKSL 233

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
           T G  D         ++ E    I  +    I AL + I    +  + P +K  L    +
Sbjct: 234 T-GKADFKLFFRWFKELIE----IENSDNADITALRAEIRAKEKDLDNPLLKALLA---E 285

Query: 234 GKFDQSFCALKEEYAKKLFDGRKM----------------DSMS----RRTLIGPHRS-- 271
            K  ++   L E++   L   ++                 D+M       + +   R+  
Sbjct: 286 NKNSETTKKLLEDHQNSLKVLKEKLNSYYSVNSKTLHTVEDAMYSFLPGFSNLKLQRAPL 345

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT----------GFAPILLLDE 321
           DLIVD  + ++++   S GE+   ++ +    A +    T              I+L+DE
Sbjct: 346 DLIVDKNNVSLSVLQLSQGEK--TILALI---ADIARRLTLLNPNSVNPLDGTGIVLIDE 400

Query: 322 ISAHLDEDKRNALFRIVTD--IGSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371
           I  HL    +  +   +       Q  +T     V  ++ ++     + N Q
Sbjct: 401 IDLHLHPSWQQNIIPRLEKTFKNIQFIVTTHSPQVCHTI-DSQNIWLLKNGQ 451


>gi|255951060|ref|XP_002566297.1| Pc22g24070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593314|emb|CAP99695.1| Pc22g24070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1308

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 3/114 (2%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYA 62
            I  + ++ F  Y S       +  + +G NG GK+ ++ AI   L  G     R     
Sbjct: 95  AIVRIKVTNFVTYTSAVFYPGPKLNMVIGPNGTGKSTLVCAICLGLGWGPQHLGRAKDLG 154

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           +  + G+             +   +  I+   + D +     +N       D L
Sbjct: 155 EFVKHGAREATIEIELCGPPKIGHNPVIQRTIKRDGNKSSFTVNGANASKNDVL 208


>gi|163840238|ref|YP_001624643.1| chromosome partition protein [Renibacterium salmoninarum ATCC
          33209]
 gi|162953714|gb|ABY23229.1| chromosome partition protein [Renibacterium salmoninarum ATCC
          33209]
          Length = 885

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K+  L++  FR  ++  L F      +  G+N VGKT+++EA+  L   +
Sbjct: 1  MKLHRLSLENFRGISARSLDFPETGAIVIEGENEVGKTSMIEALDLLITEK 51


>gi|157373988|ref|YP_001472588.1| hypothetical protein Ssed_0849 [Shewanella sediminis HAW-EB3]
 gi|157316362|gb|ABV35460.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
          Length = 410

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 60/180 (33%), Gaps = 17/180 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  +R+   +R+    Q  +  G NG GK+N+ +A+  L+            +  
Sbjct: 19  LTTLAIQNYRSLREIRVPL-KQLNLVTGANGSGKSNLYKALRLLAQTAQ--GGVVNALAL 75

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G              +G+ D +  +E    +  + L++        DE +  + +    
Sbjct: 76  EGGLDSSFWAGPENVTKGMLDGTTAIEPTVRQQAKRLKLG----FAGDEYSYLIELGLPK 131

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    +F      +R  +  +     P           ++  R   L +   ++S  +  
Sbjct: 132 PDSTTLFGLDPQIKRESI-WVGNKYRPA---------SVLVERRGALVKNRAENSGQAGW 181


>gi|124028052|ref|YP_001013372.1| Rad50 [Hyperthermus butylicus DSM 5456]
 gi|123978746|gb|ABM81027.1| predicted Rad50 [Hyperthermus butylicus DSM 5456]
          Length = 887

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 7/136 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RASYA 62
           + I+ + +  F ++   ++         VG NG GKT+I++AI++       R  R    
Sbjct: 1   MIIEAVELENFLSHRYTKVELGRGIVAVVGPNGAGKTSIVDAITYALFNIHSRDTRNKKE 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV-----DELN 117
            + R+G+P+         G +                     + D   R+V         
Sbjct: 61  PLIRLGAPAAKIIVEFSVGKKRYRVHKTVYRGATPTQATLYLLEDGKPRLVARGVESVSR 120

Query: 118 KHLRISWLVPSMDRIF 133
           +  RI    P +  + 
Sbjct: 121 EIARIVGFDPQLADVI 136


>gi|119720477|ref|YP_920972.1| SMC domain-containing protein [Thermofilum pendens Hrk 5]
 gi|119525597|gb|ABL78969.1| SMC domain protein [Thermofilum pendens Hrk 5]
          Length = 840

 Score = 49.9 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 33/228 (14%)

Query: 7   IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPG--------RGFR 57
           +  L    FR       LVF     +  G N  GK+ ILEA+ F   G        RG R
Sbjct: 4   LVSLKAQNFRRLNFQEPLVFPKGFVVIRGRNEAGKSTILEAVLFGLFGDYRIIQELRGAR 63

Query: 58  RASYADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSV--RCLQIND------- 107
            A    V    S          VEG     +  ++      R V  R ++I         
Sbjct: 64  EAGLDSVVNHRSGRARVEVVFEVEGRRYRVERVVERGREGGRQVEARLVEITQGGERLIA 123

Query: 108 -VVIRVVDELNKHLRI---------SWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHR 156
               RV +E++K +R+               ++ +      ER + ++ M+ F    +  
Sbjct: 124 TSPSRVNEEVSKLVRVNWREMLATNVIAQKDLEHLLRMGKNEREKVINMMMGFESYNKAI 183

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204
            ++ +  R M+     L +   + S        + EL VK+   R E+
Sbjct: 184 EKLEEERRAMQQ---ELEKKVLEKSSLEDKLRNLEELKVKVEEYRREL 228


>gi|320334361|ref|YP_004171072.1| DNA repair protein RecN [Deinococcus maricopensis DSM 21211]
 gi|319755650|gb|ADV67407.1| DNA repair protein RecN [Deinococcus maricopensis DSM 21211]
          Length = 535

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 67/195 (34%), Gaps = 23/195 (11%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            +  L +        L L   A    F G+ G GK+ I++A+  L  GR     + +D+ 
Sbjct: 9   HLTRLEVQRLATIEGLHLDLHAGFHAFTGETGAGKSIIVDALGLLLGGR-----ANSDLV 63

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH----LR 121
           R G+P    T    E +      S    T         +++  V+  + +L       L 
Sbjct: 64  RTGAPDMLVTGFWGEDVASRRVTSAGRST--------ARVDGEVV-ALRDLADWTGTRLT 114

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           I W   +   +       +R  LDR+V      +      +    R R   L  G  D +
Sbjct: 115 IHWQHSAQSLL---TPANQRSLLDRLVTREVSAYTAAYTAWREA-RARLEALRAGERDRA 170

Query: 182 -WCSSIEAQMAELGV 195
                +  Q+ E+  
Sbjct: 171 RQIDLLTYQVQEISA 185


>gi|256846511|ref|ZP_05551968.1| ABC transporter ATP-binding protein [Fusobacterium sp. 3_1_36A2]
 gi|256718280|gb|EEU31836.1| ABC transporter ATP-binding protein [Fusobacterium sp. 3_1_36A2]
          Length = 671

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-----QHTIFVGDNGVGKTNILEAISFLSPG 53
          +++K + +  FR +  L++ F+        T+  GDNG GKT +  A  +   G
Sbjct: 1  MQLKSIKLINFRQFKDLKVSFENSNVGRNVTLIFGDNGSGKTTLANAFIWCLYG 54


>gi|237742517|ref|ZP_04572998.1| DNA repair protein recN [Fusobacterium sp. 4_1_13]
 gi|229430165|gb|EEO40377.1| DNA repair protein recN [Fusobacterium sp. 4_1_13]
          Length = 558

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 33/286 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ ++ L I        L + FD    +  G+ G GK+ IL  I+ L   +     +
Sbjct: 1   MGRKLMLRELKIENLAIIDELDIEFDKGFIVLTGETGAGKSIILSGINLLIGEK-----A 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+ R G  +  +        E       KLET          I         +    +
Sbjct: 56  SVDMIRDGEENLVAQGVFDVDEEQKK----KLETMGIDIDGDEIIIRRSYSRSGKARAFV 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
               +  +  +  +         L  +V     +      +  +L+              
Sbjct: 112 NNVRITLADLKEITST-------LVDIVGQHSHQMLLNKNNHIKLL-------------D 151

Query: 181 SWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
           S+ S  E  + E    +     E+   +  +     E ++K+ F   +L     L  K  
Sbjct: 152 SFLSKDEKDLKENLANLLSKYREINTKMEDIEREKRETLEKKEFYEYQLEEIEKLKLKDG 211

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
           +    L+ EY +     +  + +        +  D  +     +I 
Sbjct: 212 EDEI-LEAEYKRVFNAEKIREKVYESLEYLKNDDDSALSLITNSIR 256


>gi|298529490|ref|ZP_07016893.1| AAA ATPase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510926|gb|EFI34829.1| AAA ATPase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 340

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 7/111 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS-PGRGFRRASYAD 63
           + + +L    F  +  L L       +F+G NG GKT++++A        +     +   
Sbjct: 1   MTLTYLKFHRFTAFDRLELDLSPGINVFIGTNGTGKTHLMKAAYAACDITKSKLGLADK- 59

Query: 64  VTR--IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           + R  + S        + +     A + I    R ++ +     N   +  
Sbjct: 60  LVRVFLPSNRHIGRMVKRQKGSSRAKLDI---RRGNKKLTLSFSNHAKLSR 107


>gi|153873814|ref|ZP_02002269.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152069720|gb|EDN67731.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 359

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 16/114 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI---------SFLS--PGRG 55
           IK + I  F+ + +L L       +  G N VGKT  LEA+          +L+      
Sbjct: 6   IKNITIQNFKCFQNLHLEGMENVNLIGGKNNVGKTAFLEAVELLVSSNETYYLAVNIYNL 65

Query: 56  FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            RR          S  F   F +    E    I I  E++       LQ N + 
Sbjct: 66  LRRRQLNQ-VNQDSTDFILDFIK----EDEHQIKISTESKKCEICLNLQSNGID 114


>gi|307184041|gb|EFN70591.1| DNA repair protein RAD50 [Camponotus floridanus]
          Length = 1368

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 6  KIKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          KI+ L++   RN+        + F    T+ +G NG GKT I+EA+ + + G
Sbjct: 3  KIRKLSLRGIRNFGDDNEDSLIRFSCPLTLILGPNGTGKTTIIEALKYATTG 54



 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 34/245 (13%)

Query: 141  RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
             +  +     +  +  +   + + L+R +N  L               ++ +   +  +A
Sbjct: 1049 EKLKNMNYSELTKKWEQLESEKQALLRQKNVALGNQEELERVIKQYMQELRK--EEYRLA 1106

Query: 201  RVEMINALSSLIMEYVQKENFPHIKLSLTGFLD---GKFDQSFCALKEEYAKKLFDGRKM 257
            R    N     I   VQ++   ++K + +  LD    ++ +   +      KKL+     
Sbjct: 1107 RRNYTNK---CIELTVQEDTIANLK-AYSKILDTAMIEYHEERMSTVNRIMKKLWKHVYK 1162

Query: 258  DSMSRRTLIG--PHRSD-----------LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             + +    I   P +             +   +  K       S G++ +  + I LA A
Sbjct: 1163 GTDTSSIEICTEPTKDVGSNRRSYTYKLIQTKHGCKMDMKGRCSAGQKVLASIIIRLALA 1222

Query: 305  RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---------DIGSQIFMTGTDKSVF 355
                   G   IL LDE + +LDE+  N+L   +T             Q+ +   D+   
Sbjct: 1223 ETFCKDCG---ILALDEPTTNLDEENANSLADTLTKVVELRSRYQKNFQLIIISHDEKFL 1279

Query: 356  DSLNE 360
              L +
Sbjct: 1280 QKLAD 1284


>gi|297184344|gb|ADI20461.1| chromosome segregation ATPases [uncultured alpha proteobacterium
           EB080_L43F08]
          Length = 1151

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 91/278 (32%), Gaps = 31/278 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++   L ++ F+++     L      T  VG NG GK+N+LEA+ ++      +  R   
Sbjct: 1   MQFSKLRLTGFKSFVDPTELTIADGLTGVVGPNGCGKSNLLEALRWVMGENRPKAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             DV   G+ S     +      ++  + LA  +   +   +   R  +      +   +
Sbjct: 61  MEDVIFAGASSRPARNYAEVSLLIDNTQRLAPAAFNTQDVLEIIRRITRDVGSAYKTNGK 120

Query: 116 LNKHLRISWL---------VPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            ++   +  L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DSRAKDVQMLFADASTGAHSPALVRQGQISELINAKPKARRRVLE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSSLIMEYVQK 218
             E  ++ R         D      ++AQ+  L    +      E+ N L       + +
Sbjct: 177 RHEAELKLRGSETNLNRVDDV-VEQLDAQLGSLARQARQAKRYREIGNELRHSEGLLLYR 235

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
                         +      F A  +  A +L   R+
Sbjct: 236 RWREADIARQKASEELADATKFAANAQTEASQLLKARE 273



 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  T++  S GEQ +  + +  A           API +LDE+ A LD+   N    +
Sbjct: 1043 GKKLSTLSLLSGGEQTLTALALIFAVFLA-----NPAPICVLDEVDAPLDDANVNRFCDM 1097

Query: 338  VTDIGSQI 345
            + D+ SQ 
Sbjct: 1098 LDDMTSQT 1105


>gi|307271996|ref|ZP_07553263.1| DNA repair protein RecN [Enterococcus faecalis TX0855]
 gi|306511343|gb|EFM80346.1| DNA repair protein RecN [Enterococcus faecalis TX0855]
          Length = 530

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 32/262 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + + A+  ++ +   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
              +L G  D   D+   ++ E
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE 254


>gi|33322518|gb|AAQ06987.1|AF496312_2 chromosome partition protein Smc [Lactobacillus delbrueckii
          subsp. lactis]
          Length = 45

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEA 46
          + +  L +  F+++A    + F    T  VG NG GK+NI E+
Sbjct: 1  MPLTSLILEGFKSFADKTVIDFTKGITGIVGPNGSGKSNITES 43


>gi|289617716|emb|CBI61439.1| putative SMC1 protein [Sordaria macrospora]
          Length = 1263

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F D+  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDSYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|224476901|ref|YP_002634507.1| hypothetical protein Sca_1417 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421508|emb|CAL28322.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 977

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/327 (11%), Positives = 107/327 (32%), Gaps = 53/327 (16%)

Query: 86  ADISIKLETRDDRSVRCLQIN---DVVIRVVDELNKHLRISWLVPSMDRIFS-----GLS 137
            D+   L+  +D   +  + N   D++ + + +LN HL  +     +D++F         
Sbjct: 660 HDVKRWLKQAEDNHAKWTRNNESIDLLTKELSQLNTHLNEN--TNLIDKLFKHVKVDNEE 717

Query: 138 MERRRFLDRMVFAIDPRHRRRMIDF------------------ERLMRGRNRLLTEGYFD 179
              R       +  +      +  +                  +  +   N LL +   D
Sbjct: 718 SYYRYHNRYQTYQSNHSRYHDLNKYLENQNFMYDDASKLSDKTKVQLEDENTLLAKQVDD 777

Query: 180 -SSWCSSIEAQMAELGVKI-----------NIARVEMI-NALSSLIMEYVQKENFPHIKL 226
            +    ++++++++L  +I              R  M+ N  +    ++        +  
Sbjct: 778 YNDQFLTLQSEVSDLNAQIKHMETDDTLTQLRHRYHMLKNQFNENAKDWASLSYLEALVD 837

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI-TIA 285
           +    +  K              +L +GR        T +     +++V + +  +    
Sbjct: 838 AHIQQIKDKRLPQVIDEATNIFSRLTNGR-------YTQVTYANDNVMVKHENGQMYQPT 890

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343
             S   ++++ + + L+  +++        I  +D+   H D+ ++ A+   + ++    
Sbjct: 891 EISQSTKELLYISLRLSLIKILRPYYSMPII--IDDAFVHFDKQRKAAMMDYLKEMAQTY 948

Query: 344 QIFMTGTDKSVFDSLNETAKFMRISNH 370
           Q+      K  F    +     +I   
Sbjct: 949 QVLYFTCTKDNFVPTKQKVILEKIEEG 975


>gi|164426312|ref|XP_961409.2| hypothetical protein NCU01323 [Neurospora crassa OR74A]
 gi|157071285|gb|EAA32173.2| hypothetical protein NCU01323 [Neurospora crassa OR74A]
          Length = 1263

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F D+  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDSYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|22536680|ref|NP_687531.1| DNA repair protein RecN [Streptococcus agalactiae 2603V/R]
 gi|22533520|gb|AAM99403.1|AE014214_17 DNA repair protein RecN [Streptococcus agalactiae 2603V/R]
          Length = 552

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 95/278 (34%), Gaps = 37/278 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIEEISLNFETGMTVLTGETGAGKSIIIDAMNMMLGSR-----ASVEVIR 56

Query: 67  IGS-----PSFFST--------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
            G+       FFS              G+E   ++ I+ E          +IN  ++   
Sbjct: 57  HGANKAEIEGFFSVEKNQSLVQLLEENGIELADELIIRREIFQ-NGRSVSRINGQMVNLS 115

Query: 112 --------VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                   +VD   +H +   + P+M  +          F +     I  R++     + 
Sbjct: 116 TLKAVGHYLVDIYGQHDQEELMKPNMHILMLD------EFGNTEFNVIKERYQSLFDAYR 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE--MINALSSLIMEYVQKENF 221
           +L +           + S    +E Q+AE+      +  +  ++     L+      +  
Sbjct: 170 QLRKRVLDKQKNEQENKSRIEMLEFQIAEIESVALKSDEDQTLLKQRDKLMNHKNIADTL 229

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            +  L L             A+ +  A + FD    D 
Sbjct: 230 TNAYLMLDNEEFSSLSNVRSAMNDLMALEEFDREYKDL 267


>gi|83719658|ref|YP_443234.1| hypothetical protein BTH_I2720 [Burkholderia thailandensis E264]
 gi|257139468|ref|ZP_05587730.1| hypothetical protein BthaA_09741 [Burkholderia thailandensis
          E264]
 gi|83653483|gb|ABC37546.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 784

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + I+F+ I+ FR   S R+    + T+FVG N  GKT+ + A+
Sbjct: 1  MHIEFVEIANFRKLLSARVDLSLKTTLFVGANNSGKTSAMLAL 43


>gi|332264578|ref|XP_003281312.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of
           chromosomes protein 1B-like [Nomascus leucogenys]
          Length = 1236

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 97/279 (34%), Gaps = 35/279 (12%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
            ++ L +  F+++     +    + T  +G NG GK+NI++A+SF+   +    R  +  
Sbjct: 3   HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNIMDALSFVMGEKIANLRVKNIQ 62

Query: 63  DVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKH 119
           ++   G+      S+ A V+ +        K   R  R V    + +D ++     + + 
Sbjct: 63  ELI-HGAHIGKPISSSATVKIVYVEESGEEKTFARIIRGVCSEFRFDDNLVSRSVYIAEL 121

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDP--RHRRRMIDFER---- 164
            +I  +V + + +               ER +F + +  + +    +  +    ++    
Sbjct: 122 EKIGIIVKAQNCLVFQGTVESIAMKKPKERTQFFEEISSSGELIGEYEEKKRKLQKAEED 181

Query: 165 -----------LMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEMINALSSL 211
                          R   L +   D   S    ++    +L +       + I+ L++ 
Sbjct: 182 AQFNFNKKKNVAAERRQAKLEKEEADRYQSLLEELKMNKIQLQLFQLYHNEKKIHLLNTK 241

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           +    +  +     LS    +     +    L   Y K+
Sbjct: 242 LEHMNRDLSVXRESLSHHENIAKGRKKEHAMLSRRYYKQ 280


>gi|311742405|ref|ZP_07716214.1| DNA repair protein RecN [Aeromicrobium marinum DSM 15272]
 gi|311314033|gb|EFQ83941.1| DNA repair protein RecN [Aeromicrobium marinum DSM 15272]
          Length = 564

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 57/183 (31%), Gaps = 30/183 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + + ++ L +          L  DA  T+  G+ G GKT ++ A+  L   R     +
Sbjct: 1   MWHHLALRSLGV-----IEEAELELDAGFTVITGETGAGKTMVVTALGLLRGDR-----A 50

Query: 61  YADVTRIGSPS-----------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-- 107
              + R G+                  A VE   G  D ++ +        R        
Sbjct: 51  DPGLVRHGAEQARVEAEISVGTAGRVRAAVEEAGGSVDDTVVVARSVSAKGRSRAHAGGA 110

Query: 108 -VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR----FLDRMVFAIDPRHRRRMIDF 162
            V   ++ E+   L          R+      ++R     F    + A+  R+      +
Sbjct: 111 TVPAALLTEITDELVAVHGQSDQHRLLR--PTQQRAALDLFCGDELAALRSRYDPAWARW 168

Query: 163 ERL 165
             +
Sbjct: 169 REI 171


>gi|288941259|ref|YP_003443499.1| hypothetical protein Alvin_1534 [Allochromatium vinosum DSM 180]
 gi|288896631|gb|ADC62467.1| hypothetical protein Alvin_1534 [Allochromatium vinosum DSM 180]
          Length = 659

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 24/57 (42%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
          +K+  L +  +R +   ++ FD   T+  G N  GK+ ++EA          R    
Sbjct: 1  MKLVSLRVRHYRLHREQQIAFDPSLTLIGGANETGKSTLVEAAHRALFLNHRRTGQD 57



 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FRIVTDIGSQIFMTGTD 351
           +   + LA A +++   G +  L+ D+  A+ D ++  +L     +    G QI +   +
Sbjct: 586 LAAAVRLAIAEVLAANHGGSLPLVFDDAFANSDPERIQSLHRMLELAARRGLQIIVLTCN 645

Query: 352 KSVFDSLNET 361
            + + SL   
Sbjct: 646 PADYSSLGAR 655


>gi|183221017|ref|YP_001839013.1| putative DNA repair protein RecN [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911111|ref|YP_001962666.1| DNA repair protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167775787|gb|ABZ94088.1| DNA repair protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779439|gb|ABZ97737.1| Putative DNA repair protein RecN [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 569

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 27/181 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L I +F  + SL L      T+F G++G GK+ I +A++ L  G   R ++     R
Sbjct: 2   ITHLKIKDFALFESLELSLSDGLTVFTGESGAGKSLIFDALASLFGG---RCSTAN--IR 56

Query: 67  IGSPSF-FSTFARVEGMEGLAD-------------ISIKLETRDDRSVRCLQINDVVIRV 112
            G   +       + G     D             I I  E   D   R ++I + +   
Sbjct: 57  QGKDRYSLQAVLSLTGQNLTKDYLMEQGFRYTGDEILITKELMKDGKAR-VKIGESLAST 115

Query: 113 --VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM--VFAIDPRHRRRMIDFERLMRG 168
             + EL K +           +    +     FLDR   + ++  + +  +  +    + 
Sbjct: 116 THLRELGKTMAEIHCQNEQLFLLEKSNQL--EFLDRFGNLESLKFKFKSALQQYRH-WKQ 172

Query: 169 R 169
           +
Sbjct: 173 K 173


>gi|17978290|ref|NP_536718.1| structural maintenance of chromosomes protein 1B [Mus musculus]
 gi|29336874|sp|Q920F6|SMC1B_MOUSE RecName: Full=Structural maintenance of chromosomes protein 1B;
          Short=SMC protein 1B; Short=SMC-1-beta; Short=SMC-1B
 gi|15824418|gb|AAL09333.1|AF303827_1 structural maintenance of chromosomes 1beta [Mus musculus]
 gi|120538463|gb|AAI29801.1| Structural maintenance of chromosomes 1B [Mus musculus]
 gi|148672493|gb|EDL04440.1| structural maintenace of chromosomes 1B [Mus musculus]
          Length = 1248

 Score = 49.5 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3  HLELLLVENFKSWRGRQVIGPFKRFTCIIGPNGSGKSNVMDALSFVMGEKTTNLRVKNIQ 62

Query: 63 DVTR 66
          ++  
Sbjct: 63 ELIH 66


>gi|315109451|gb|EFT81427.1| DNA repair protein RecN [Propionibacterium acnes HL030PA2]
          Length = 559

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 111/369 (30%), Gaps = 40/369 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L   +  T   G+ G GKT ++  I  L   +     +
Sbjct: 1   MIRSVRIRGLGVID-----ETVLEPSSALTAVTGETGAGKTIVVTGIGLLLGDK-----A 50

Query: 61  YADVTRIGSPSFFS-------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              + R G                RV  + G  +    +  R   S R   +        
Sbjct: 51  DTGLVRHGCDRAVVEAVLDTPDAGRVSELGGTVEDGEVICARHITSRRSRALLGGAQVTA 110

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +L   +     +         +   R+     R     +     RH +   +F R    
Sbjct: 111 SQLAHIVGDQVTIHGQSEQVRLVDAARQLDVVDRAAGDELAGYLSRHAQLWSEF-RAASQ 169

Query: 169 RNRLLTEGYFDSSW-CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIK 225
           R + L E    +      +  +++E+           ++I  ++ L      +E+     
Sbjct: 170 RLQRLNEDRAGAEMEREVLTRRVSEVDAVDPKPHEDDDLIAEMAGLQAAQSIRESLNKAD 229

Query: 226 LSLTGFLDGKFDQSFC-ALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           + L G       Q    AL E+   +L      D    +   R   +    +DL      
Sbjct: 230 VLLNGVETSTGPQPGALALLEQAVHELDGTGDADPHAAELAERARQMSYDLTDLAASVAG 289

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FR 336
            A          Q++  +G  LA  + +          LLD  +A  D  +   L     
Sbjct: 290 HAARAEAD---PQRLEELGGRLAAIQRLLRARTTTLDDLLDSTAA--DRHRLAELDPGAT 344

Query: 337 IVTDIGSQI 345
            +  +G Q+
Sbjct: 345 DLDFLGQQV 353


>gi|292489109|ref|YP_003531996.1| DNA repair protein RecN [Erwinia amylovora CFBP1430]
 gi|292900229|ref|YP_003539598.1| DNA repair protein [Erwinia amylovora ATCC 49946]
 gi|291200077|emb|CBJ47203.1| DNA repair protein [Erwinia amylovora ATCC 49946]
 gi|291554543|emb|CBA22132.1| DNA repair protein recN (Recombination protein N) [Erwinia
           amylovora CFBP1430]
 gi|312173267|emb|CBX81522.1| DNA repair protein recN (Recombination protein N) [Erwinia
           amylovora ATCC BAA-2158]
          Length = 553

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 28/208 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LSQLTISNFAIVRELEIDFQRGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   + +   ++   +  ++     D   R   IN   V + 
Sbjct: 57  QGASRADICARFSLKDTPSAQRWLQDNQLDDGNECLLRRVIGSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDPRHRRRMIDFERLM 166
            + +L + L       +   +    S  ++  LD       +     RH R+     R +
Sbjct: 116 QLRDLGQTLIQIHGQHAHQLLLK--SEHQKTLLDAYAAEPELMQRMGRHYRQWHQSCRAL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELG 194
               +   E             ++ E  
Sbjct: 174 AQHQQQSQEREARRELLHYQLKELNEFA 201


>gi|261820935|ref|YP_003259041.1| hypothetical protein Pecwa_1644 [Pectobacterium wasabiae WPP163]
 gi|261604948|gb|ACX87434.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163]
          Length = 596

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 60/362 (16%), Positives = 116/362 (32%), Gaps = 65/362 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           ++I  + +  F N++++ +       + VG+N VGK+N +  +   L PG   R      
Sbjct: 1   MRISRVRLINFANFSNVDVETGESI-VIVGENKVGKSNFIRGLQLILDPGLSER---DRQ 56

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +   G   F+      E +    +IS+ L    D       +ND V+             
Sbjct: 57  L---GFEHFWDGLGE-EKLGETIEISVDLTDFTDDPRLMAHLNDCVVNP----------- 101

Query: 124 WLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                      G  M  R   RF  +      P     + D+E ++         G  D 
Sbjct: 102 -----------GPPMVARLTYRFQPKTELNRAP---ESLKDYEYVI--------FGGTDP 139

Query: 181 SW--------CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSL-T 229
                        I+ Q A    +  ++  R   +  L   +   +  +    I+  +  
Sbjct: 140 DMHIGGALRRMLPIDVQGALRDAEKDLSSWRNSPLRPLIEELTASLDDDAREEIQTQIDE 199

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG--PHRSD-----LIVDYCDKAI 282
              +        A  E  +++L      D  +    +G  P R D     L +   +   
Sbjct: 200 AQRELAGHDDVVATAERISERLV-AIAGDQHAVPVSLGLAPARVDALLRSLRLLLDNGIR 258

Query: 283 TIAHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
            I   S G   ++ + +  L   RL+ +        +++E  AHL    +  ++R     
Sbjct: 259 GIGDASLGTANLIFLALKSLELDRLVDDGERDHTFFVVEEPEAHLHPHVQRLVYRYFLGT 318

Query: 342 GS 343
             
Sbjct: 319 DG 320


>gi|145299091|ref|YP_001141932.1| hypothetical protein ASA_2118 [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851863|gb|ABO90184.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 395

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 52/371 (14%), Positives = 114/371 (30%), Gaps = 42/371 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ +++  F+++   R+    +  + +G NG GK+ +     FL             +
Sbjct: 1   MHIESIHLKNFKSFRDTRMNKIPKFCVLIGANGTGKSTLFAVFEFLKEA--LNGNINTAL 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            ++G    F    R  G  G  +I +K    DDR          +I    E+ +    + 
Sbjct: 59  MKVGGSRGFHE-VRSRGSSGNIEIELKFREADDR---------PLITYYLEIGEENGRAV 108

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +   + +   G S +   FLD      +          ++    R     +        +
Sbjct: 109 VARELLKYRRGSSGQPWHFLDFRCGKGEAIINELASMNDQQEMQRE---PQELRSPDILA 165

Query: 185 S-IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
               AQ A     + + R  +I      I ++   +  P  +      L  + +      
Sbjct: 166 VKGLAQFARFPAVMALGR--LIENW--HISDFHISKARPEQEAGFADHLSREGENLALVT 221

Query: 244 K-------EEYAKKLFDGRKM-----DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +       + + + L    +         ++ T  G           +      + S G 
Sbjct: 222 EYLYRSHPDVFTQVLTRLAERVPGITKVEAKTTEEGRVMLRFQDGAFEDPFLARYVSDGT 281

Query: 292 QKVVLVGIFL---AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            K+    I L   A   L+        +     +   L E+ R          G+Q+F++
Sbjct: 282 IKMFAYLILLYDPAPHELLCVEEPENQLY--PSLLTELAEEFRAY-----ATRGAQVFVS 334

Query: 349 GTDKSVFDSLN 359
                  +++ 
Sbjct: 335 SHSPDFLNAIE 345


>gi|330817980|ref|YP_004361685.1| hypothetical protein bgla_1g31210 [Burkholderia gladioli BSR3]
 gi|327370373|gb|AEA61729.1| hypothetical protein bgla_1g31210 [Burkholderia gladioli BSR3]
          Length = 395

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 20/137 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------------SP 52
           ++I+F+ I  FR + + RL    +  + VG NG GKT + +  SFL            + 
Sbjct: 1   MQIEFIEIKNFRLFRNTRLTNIPRLCVLVGANGTGKTTLFDVFSFLKDALVMNVGKAVAK 60

Query: 53  GRGFRRASYADVTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
             GFR     ++   G    P   +   R+E       ++  L+   D + R +   +V+
Sbjct: 61  RGGFR-----ELASRGFAHEPIEITLQFRLEITGRERLVTYLLKIEPDLNGRPVVAREVL 115

Query: 110 IRVVDELNKHLRISWLV 126
                            
Sbjct: 116 RYKRSSYGAPFHFLDFT 132


>gi|257452570|ref|ZP_05617869.1| chromosome partition protein smc [Fusobacterium sp. 3_1_5R]
 gi|317059110|ref|ZP_07923595.1| chromosome partition protein smc [Fusobacterium sp. 3_1_5R]
 gi|313684786|gb|EFS21621.1| chromosome partition protein smc [Fusobacterium sp. 3_1_5R]
          Length = 1172

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          + +K + +  F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++     +
Sbjct: 1  MYLKAVEVHGFKSFGEKVYIEFNQGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60


>gi|254565571|ref|XP_002489896.1| Structural maintenance of chromosomes (SMC) protein [Pichia
           pastoris GS115]
 gi|238029692|emb|CAY67615.1| Structural maintenance of chromosomes (SMC) protein [Pichia
           pastoris GS115]
 gi|328350307|emb|CCA36707.1| Structural maintenance of chromosomes protein 5 [Pichia pastoris
           CBS 7435]
          Length = 1098

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS----Y 61
            I  L +  F+N        + +    VG NG GK++ + A+     G+    A      
Sbjct: 34  AIIRLRVKNFQNTGLSEFQLNPRLNFIVGPNGSGKSSFVNAVCLGLGGKLEWIAKEQLQL 93

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHL 120
            D  R G  + F      +G E    ++++      +RS   L   +   ++V E  K L
Sbjct: 94  KDFIRNGCDNSF-IEIEFKGAETNETLTVRRSFNLTNRSTWTLNGKETTEKMVKERCKEL 152

Query: 121 RISW 124
            I  
Sbjct: 153 NIQL 156


>gi|326567833|gb|EGE17937.1| DNA repair protein RecN [Moraxella catarrhalis 12P80B1]
 gi|326568165|gb|EGE18247.1| DNA repair protein RecN [Moraxella catarrhalis BC8]
          Length = 568

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 67/231 (29%), Gaps = 23/231 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L            + FD +  +  G+ G GK+ IL+A+S     R     + + + R
Sbjct: 2   LISLTFENLALIEQKHIDFDDRFNVITGETGAGKSLILDALSLCVGER-----ADSSMVR 56

Query: 67  IGSPSF-----------FSTFARVEGMEGL-ADISIKLETRDDRSVR-CLQINDVVIRVV 113
            G                   A  E  +    D ++ +  +     R    IN V   + 
Sbjct: 57  HGCDEASVFGEFDISGNAQVIAWFEQHDRKLEDETLLIRRKISNQGRSKSWINGVPASIS 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           +  +    +  +      +          +LDR+               +        L 
Sbjct: 117 ELKSLGSMLVNIHSQHAGLELLKPQFIVDWLDRIG-----GFGDLKAAAKTAFHHYQTLK 171

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +     S  +    +MA L  K+      ++     +  EY +  N   +
Sbjct: 172 RQADDARSQSAQRADRMALLSAKLTDIEPLLLVDFQGIEAEYDELSNLESL 222


>gi|326773130|ref|ZP_08232413.1| DNA repair protein RecN [Actinomyces viscosus C505]
 gi|326636360|gb|EGE37263.1| DNA repair protein RecN [Actinomyces viscosus C505]
          Length = 602

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 83/306 (27%), Gaps = 46/306 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L+I +        L      T   G+ G GKT +L ++  L   R         + R
Sbjct: 2   IESLHIEDLGVIEEADLPLSRGLTALTGETGAGKTMVLTSLGLLLGQRAETT-----IVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISI---------------KLETRDDRSVRCLQINDVVIR 111
            G+       A +   E      +               +      RS   L    V   
Sbjct: 57  SGAERSLVEGAFLVDSESRVAARVVEAGGDLDDDLLLASRTVPASGRSRAYLGGRSVPAS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR-- 169
           V+ E+    R+  +    D++    +  +R  LD +       H      + R  + R  
Sbjct: 117 VLSEVGG--RLVSVHGQADQLRLRSTAAQRAALDSLGGQ---DHAALCRRYARAYQERRQ 171

Query: 170 ------------NRLLTEGYFDSSWCSSIEAQMAELGVKI----NIARVEMINALSSLIM 213
                            E     +W  ++E      G          R++    L     
Sbjct: 172 ADQELQEWQASAQARAVEVAQLRTWLEALEEVDPRSGEDRELTAEAERLDHAEDLRRAAT 231

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
                 +      S TG           A +   A+   D    +  +R   +G   +D+
Sbjct: 232 GARTALSGEE---SATGQAPDVVSLIAYAHRSLAAESARDSALAELATRTQRLGIDAADI 288

Query: 274 IVDYCD 279
             +   
Sbjct: 289 AAELGG 294


>gi|254583594|ref|XP_002497365.1| ZYRO0F03828p [Zygosaccharomyces rouxii]
 gi|238940258|emb|CAR28432.1| ZYRO0F03828p [Zygosaccharomyces rouxii]
          Length = 1217

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 6   KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           ++  L +  F++Y  ++R+ F D+     +G NG GK+N+++AISF+   +    R    
Sbjct: 3   RLVGLELYNFKSYRGTVRVGFGDSNFISIIGPNGSGKSNMMDAISFVLGVKSSHLRSQIL 62

Query: 62  ADVTRIG------SPSFFSTFARVEGMEGLADISIKLETRDDRSV-RCLQINDVVI--RV 112
            D+   G              A V+     +D +++L     R+     ++N      + 
Sbjct: 63  KDLIYRGVEGEEDEEDGEGRTAYVKAFYLKSDSTVELSRSISRNGDTQYKMNGKNCGYKQ 122

Query: 113 VDELNKHLRISW 124
             E  +   I  
Sbjct: 123 YAEFLEEENILI 134


>gi|257125271|ref|YP_003163385.1| DNA repair protein RecN [Leptotrichia buccalis C-1013-b]
 gi|257049210|gb|ACV38394.1| DNA repair protein RecN [Leptotrichia buccalis C-1013-b]
          Length = 559

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 6/92 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L ++      +L L F+ +     G+ G GK+ IL  IS L   R        D+ R
Sbjct: 2  LRELRLNNLAIIKNLDLEFNEKFIALTGETGAGKSIILNGISLLIGERSH-----IDMIR 56

Query: 67 IGSPSFFST-FARVEGMEGLADISIKLETRDD 97
           G  + F+     +   +      +  E  DD
Sbjct: 57 NGEENLFAEGIFELNENQKKRLNELGFEIEDD 88


>gi|167040182|ref|YP_001663167.1| DNA repair protein RecN [Thermoanaerobacter sp. X514]
 gi|300914265|ref|ZP_07131581.1| DNA repair protein RecN [Thermoanaerobacter sp. X561]
 gi|307724499|ref|YP_003904250.1| DNA repair protein RecN [Thermoanaerobacter sp. X513]
 gi|166854422|gb|ABY92831.1| DNA repair protein RecN [Thermoanaerobacter sp. X514]
 gi|300889200|gb|EFK84346.1| DNA repair protein RecN [Thermoanaerobacter sp. X561]
 gi|307581560|gb|ADN54959.1| DNA repair protein RecN [Thermoanaerobacter sp. X513]
          Length = 566

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 72/206 (34%), Gaps = 24/206 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I        + L F+    +  G+ G GK+ +++++  L   R  R     D+ R
Sbjct: 2   LLALSIQNVALIDKVELQFEEGFNVLTGETGAGKSIVIDSVLLLLGSRASR-----DIIR 56

Query: 67  IGSPS------FFSTFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDVV 109
            G         FF    + + +E L ++ + LE           T   RS   +    V 
Sbjct: 57  TGEEKAIVEGIFFVDSNKDKIVEILEEVGLNLEEDDTLIINREITSSGRSYCRINGRIVP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           +  + ++   L           +            F D+   ++  R +  + ++ ++ +
Sbjct: 117 LSFLSKIGAFLVDILGQHEHQFLLDNTKHLSILDNFGDQEFKSLKERFKEVLEEYRKIQK 176

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
             +    +    +     ++ Q+ E+
Sbjct: 177 EISSFFKDEKEKNEIIDLLKYQIEEI 202


>gi|104774372|ref|YP_619352.1| hypothetical protein Ldb1539 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423453|emb|CAI98339.1| Conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 808

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 78/224 (34%), Gaps = 25/224 (11%)

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--------------VEMIN 206
           D  +L+  +  L  E        S ++ +MA L  +    R               E+ +
Sbjct: 586 DLSKLLGQKQELEKELADKQRAVSVLQQEMANLLAE--EKRYASSSQVAEDKQTLAEIAD 643

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM--SRRT 264
           +      +Y+       +                  L ++Y + L  GR  + +  ++ +
Sbjct: 644 SFRRDSQDYLASLLAGEVIGRTLDLASNDRFPKMLKLAQDYLEILTGGRYREILLPAKLS 703

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
              P +   +V    K I +A+ S G Q+ +   + LA    I +       +L+D+   
Sbjct: 704 KKTPLK---VVRKDKKKIPLAYLSRGTQEQLYFALKLAFVMQIKDKIDLP--VLIDDSFV 758

Query: 325 HLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNETAKFMR 366
           + D  +   +  ++  +    QI +    + + ++++      R
Sbjct: 759 NFDGPRTGYIVDMLKKMSEDKQILVFTAREDLAEAVSAAPIRYR 802


>gi|113476492|ref|YP_722553.1| SMC protein-like [Trichodesmium erythraeum IMS101]
 gi|110167540|gb|ABG52080.1| SMC protein-like [Trichodesmium erythraeum IMS101]
          Length = 418

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K + +  ++++    L  D   T+ +G N  GK+N+++A+ FL
Sbjct: 2  LKQITLENWKSFRHAELYIDP-LTVLIGTNASGKSNVVDALDFL 44


>gi|323138748|ref|ZP_08073813.1| AAA ATPase [Methylocystis sp. ATCC 49242]
 gi|322395995|gb|EFX98531.1| AAA ATPase [Methylocystis sp. ATCC 49242]
          Length = 390

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  + I  F  + SL+L    +  + +G NG GKT++L+AI  L+  
Sbjct: 2  IAGVEIENFTAFGSLQLSLSPRVNVVIGSNGTGKTHLLKAIYGLALA 48


>gi|257440563|ref|ZP_05616318.1| putative cell division protein Smc [Faecalibacterium prausnitzii
           A2-165]
 gi|257196886|gb|EEU95170.1| putative cell division protein Smc [Faecalibacterium prausnitzii
           A2-165]
          Length = 1151

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 22/176 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           +  K L I  F+++   +++ FD   T  VG NG GK+N+ +A+ ++      R+   A 
Sbjct: 1   MVFKELEIQGFKSFPDKVKITFDEGVTGVVGPNGSGKSNLSDAVRWVLGETSARQLRAAG 60

Query: 63  ---DVT-----RIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVI 110
              DV      R G+  F      ++      D+    + +  R  RS      IN  + 
Sbjct: 61  KMEDVIFGGTRRRGAMGFAQVRLTLDNSSHALDVEADEVTIGRRYYRSGESEYSINGQIC 120

Query: 111 RVVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
           R+ D     L                +  I +  S ERR   +        R+R+ 
Sbjct: 121 RLKDVYELLLDTGIGRDGYSVIGQGRIAEIVAAKSSERREIFEEACGIAKYRYRKN 176


>gi|222151411|ref|YP_002560567.1| DNA repair protein RecN [Macrococcus caseolyticus JCSC5402]
 gi|222120536|dbj|BAH17871.1| DNA repair protein RecN [Macrococcus caseolyticus JCSC5402]
          Length = 555

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 94/264 (35%), Gaps = 31/264 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +F    SL +      T+  G+ G GK+ I++AI  L    G R +    + R
Sbjct: 2   LVSLSIQQFAIIESLEIELKNGLTVLSGETGAGKSIIIDAIGQLI---GMRASQT--MVR 56

Query: 67  IGSPSFFSTFAR-VEGMEGLADISIKLETRDD----------RSVRCL-QINDVVIRVVD 114
            G           +E  + +  +  + E   D          +S + L +IN+ +I  + 
Sbjct: 57  HGEQKAVVEGVFDIENNDKVIHLLEQKEIPLDDFMLVKREIFKSGKSLCRINNQLI-TLT 115

Query: 115 ELNKHLRISWLV---PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
           EL + ++    +        +           LD        +       +    + + +
Sbjct: 116 ELREVMQELLDIHGQHETQHLLK--PKYHIMLLDEYSEQTYQKLYEEYRAYYFDYKEKQK 173

Query: 172 LLTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
            L +    D +    ++  + +   K    +  ++N    L  E  + ENF  +   L+ 
Sbjct: 174 ELEQLQQKDEALLQRLD--LIKYQFKELSDKNLVVNEKERLEEEINRLENFEKLNDVLSK 231

Query: 231 FL-----DGKFDQSFCALKEEYAK 249
            +     DGK  +     KE+ A+
Sbjct: 232 SITLLNDDGKLLELLFDFKEQLAE 255


>gi|217979921|ref|YP_002364068.1| chromosome segregation protein SMC [Methylocella silvestris BL2]
 gi|217505297|gb|ACK52706.1| chromosome segregation protein SMC [Methylocella silvestris BL2]
          Length = 1151

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 95/295 (32%), Gaps = 42/295 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K   L I+ F+ +      + +   T  VG NG GK+N++EA+ +    S  +  R + 
Sbjct: 1   MKFTKLRIAGFKTFVDPTDFLIEPGLTGVVGPNGCGKSNLVEAMRWAMGESSSKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++     A        +I++  R +R S    ++N  
Sbjct: 61  MDDVIFSGGGNRPARNMAEVVLYLDNSARTAPAAFNDSDAIEVSRRIERESGSTYRVNGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR---MVFAIDPRHRR 157
             R  D   L          P+M R      + S    ERRR L+    +      RH  
Sbjct: 121 EARARDVQLLFADASSGSRSPAMVRQGQIGEMISAKPQERRRILEEAAGVAGLHSRRHEA 180

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR-----VEMINALSSLI 212
            +      ++     L                +     +    R     +    AL +LI
Sbjct: 181 ELR-----LKAAADNLQRLDDILQQIEGQTKGLERQARQAARYRDLAGSIRRAEALLALI 235

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG-----RKMDSMSR 262
                 ++    + SL  F     +++    +   A+ L        R  +  + 
Sbjct: 236 HHKEAAQSLAEAEASLDIFTREVEERTKAQAEAARAQGLAAHALPALRDAELAAG 290



 Score = 40.3 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K   +   S GEQ +  + +  A        T  +PI +LDE+ A LD+        +
Sbjct: 1041 GKKPQVMTLLSGGEQALTALSLIFAIF-----LTNPSPICVLDEVDAPLDDANVERFCDL 1095

Query: 338  VTDIGSQI---FMTGTDKSV 354
            + ++  +    F+T T   +
Sbjct: 1096 LQEMRGKTETRFITITHNPI 1115


>gi|163751931|ref|ZP_02159144.1| SMC family protein [Shewanella benthica KT99]
 gi|161328214|gb|EDP99379.1| SMC family protein [Shewanella benthica KT99]
          Length = 1136

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++  S  + F +  +  +G NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDSTTIPFLSPLSAIIGPNGCGKSNIIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            ADV   GS +            F +   R+ G        +              +N  
Sbjct: 61  MADVIFNGSTARRPVSVASVELNFENLDGRLTGEYSSYQEIVVKRQVSRDGDSNYFLNGQ 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 KCRRKD 126



 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 41/226 (18%), Positives = 76/226 (33%), Gaps = 49/226 (21%)

Query: 166  MRGRNRLLTEGYFDSSWCS------SIEAQMAELGVKINIA-RVEMINALSSLIMEYVQK 218
            ++ R   L  G  DS           +E   + L + I+   R   +  + + I+     
Sbjct: 877  LKLRREGLK-GQADSQLMQFKEQDIELEQVKSALDLNISAQTRQRELERIRAQIIHLGAI 935

Query: 219  ENFPHIKLS-------LTGFLDGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRT----- 264
                  +              D     +  +L+E   K   +   R  D+  +       
Sbjct: 936  NLAAIEEYEQRSERKNYLDSQDADLTSALSSLEEAIRKIDKETKSRFKDTFDKVNKDLGL 995

Query: 265  ----LIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHAR 305
                + G   ++L + + D               K  TI   S GE+ +  + +  A  R
Sbjct: 996  LFPKVFGGGSAELALTHDDLLETGVTIMARPPGKKNSTIHLLSGGEKALTALSLVFAIFR 1055

Query: 306  LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--Q-IFMT 348
            L       AP  +LDE+ A LD+   +   R+V ++    Q IF++
Sbjct: 1056 L-----NPAPFCMLDEVDAPLDDANVDRFCRLVKEMSQSVQFIFIS 1096


>gi|152997963|ref|YP_001342798.1| DNA repair protein RecN [Marinomonas sp. MWYL1]
 gi|150838887|gb|ABR72863.1| DNA repair protein RecN [Marinomonas sp. MWYL1]
          Length = 556

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 17/120 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + IS F    SL L F    T+  G+ G GK+ +++A+S     R     + A V R
Sbjct: 2   LTSIAISNFAIVESLELEFKKGMTVISGETGAGKSIMVDALSLCLGDR-----TDAAVVR 56

Query: 67  IGSPSFFS-----------TFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVD 114
            G                     +E  +   D    L     +  R    IN     + D
Sbjct: 57  HGQKRADISASFDIQHYPHVHKWLEERDLEHDQHCILRRVISKEGRSKAYINGRPCTLSD 116


>gi|315646336|ref|ZP_07899456.1| DNA repair protein RecN [Paenibacillus vortex V453]
 gi|315278535|gb|EFU41851.1| DNA repair protein RecN [Paenibacillus vortex V453]
          Length = 579

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 72/215 (33%), Gaps = 30/215 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M N + I+ L +       S+ + F     +  G+ G GK+ I++A+  ++ GRG     
Sbjct: 1   MLNTLSIRNLAVV-----ESVDVQFYPGFHVLTGETGAGKSIIIDALGLIAGGRG----- 50

Query: 61  YADVTRIGSPSFFSTFARVE--------------GMEGLADISIKLETRDDRSVRCL-QI 105
            A++ R G        A  E              G+E   +  + +        +   +I
Sbjct: 51  SAELIRYGCDKA-EIEALFELPIDHPVWNTLKELGVEADREEHLLIRRELTAQGKSTSRI 109

Query: 106 NDVVIRV--VDELNKHLRISWLVPSMDRIFSGLS--MERRRFLDRMVFAIDPRHRRRMID 161
           N  ++ +  + E+ + L           +            + D+++     +++    +
Sbjct: 110 NGQLLNLSMLREVGEKLINIHGQHEHQSLLRSEQHMSLLDTYGDKVIGPAKRKYQGLYSE 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           F ++ R    L                Q+ E+   
Sbjct: 170 FSKVERELRDLQETSQKAYQMLDMYRFQLEEIAAA 204


>gi|260583702|ref|ZP_05851450.1| DNA repair protein RecN [Granulicatella elegans ATCC 700633]
 gi|260158328|gb|EEW93396.1| DNA repair protein RecN [Granulicatella elegans ATCC 700633]
          Length = 561

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I+ L I  F     +R  F+   T+  G+ G GK+ I++A+  L+   G R +   ++ R
Sbjct: 2  IQELFIKNFAIIEEVRCQFEKGMTVLTGETGAGKSIIIDAVGLLA---GERASL--EMIR 56

Query: 67 IGSP-SFFSTFARVEGMEGLADI-SIKLETRDD 97
           GS  +       ++  E   +I  + +E  +D
Sbjct: 57 YGSEKATIQAVFTIDSEETKRNIEELGIEIEND 89


>gi|240142897|ref|YP_002967410.1| chromosome segregation-like (SMC) protein [Methylobacterium
           extorquens AM1]
 gi|240012844|gb|ACS44069.1| chromosome segregation-like (SMC) protein [Methylobacterium
           extorquens AM1]
          Length = 1146

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 79/234 (33%), Gaps = 30/234 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR----GFRRA 59
           ++I  L I  F+++A  ++L  +A  T  VG NG GK+N+LEAI + + G      FR +
Sbjct: 1   MRINGLVIDGFKSFADRVKLPIEAGTTGVVGPNGCGKSNLLEAIRW-AMGEHRVAEFRGS 59

Query: 60  SYADVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
              DV      R    S        E         +     +          +  +R + 
Sbjct: 60  GMEDVIFAGTQRRSERSICEVGIEHEDPARDGGRLMVRRRIERGEGSSYWFAERKVR-LS 118

Query: 115 ELNKHLRISWLVPSMDRIFSGL----------SMERRRFLD--RMVFAIDPRHRRRMIDF 162
           ++  H +     P+   + S              +RR  L+    +  + PR        
Sbjct: 119 DVVLHYKDLGSGPTSAALVSQSQITRLVDKATPADRRPLLEAAAGIAGLKPR----RDAA 174

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
            + +R   + L +   D     +   ++     +    R   I+ L       +
Sbjct: 175 AKSLRESLQNLHDNERDLERMRAEVERLTAEAEQ--ARRRMEIDGLVRRAEATL 226


>gi|66360042|ref|XP_627199.1| Smc ABC ATpase [Cryptosporidium parvum Iowa II]
 gi|46228608|gb|EAK89478.1| Smc ABC ATpase [Cryptosporidium parvum Iowa II]
          Length = 1268

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV- 64
          +IK + I++   +  + +       +  G NG GK++++ AI+ L    G +    A++ 
Sbjct: 26 QIKRVIINDIGGHEFIDISLLPGVNLITGGNGSGKSSLVSAIALLCGWSGRKAGKDANLN 85

Query: 65 --TRIGSP 70
             RIG+ 
Sbjct: 86 KYVRIGAN 93


>gi|307564560|ref|ZP_07627100.1| DNA repair protein RecN [Prevotella amnii CRIS 21A-A]
 gi|307346718|gb|EFN92015.1| DNA repair protein RecN [Prevotella amnii CRIS 21A-A]
          Length = 553

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 9/106 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  F     L + F A  ++  G+ G GK+ IL AI  L   R     + + + +
Sbjct: 2   LKNLYIKNFTLIDQLDISFHAGFSVITGETGAGKSIILGAIGLLLGNR-----ADSKMIK 56

Query: 67  IGSPSFFS----TFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            G            ++        D++I  E +D    R L +N  
Sbjct: 57  SGEKKCVIEAHFDISQYNYKSYFEDLNIDFEPKDTILRRELMVNGK 102


>gi|294788255|ref|ZP_06753498.1| putative RecF/RecN/SMC N domain protein [Simonsiella muelleri ATCC
           29453]
 gi|294483686|gb|EFG31370.1| putative RecF/RecN/SMC N domain protein [Simonsiella muelleri ATCC
           29453]
          Length = 1159

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 104/303 (34%), Gaps = 46/303 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++     +   +Q    +G NG GK+N+++A+ ++   +  +  R  +
Sbjct: 1   MRLTHIKLAGFKSFTDPTTIHVPSQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGEN 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDRSVR-CLQINDV 108
             DV   G+ +   +  A VE +    D            I ++ +  R       IN+ 
Sbjct: 61  MQDVIFNGAATRRPAPRASVELVFDNHDHALQGSWGQYSEISIKRQLTRQGESSYFINNQ 120

Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRFL 144
            +R  D                  E     RI    P   R++   +       ERRR  
Sbjct: 121 SVRRRDITDLFLGTGIGSRGYAVIEQGMISRIIEARPEELRVYIEEAAGISKYKERRRET 180

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-----GVKINI 199
           +  +      H +R+ D +  +  +   L +    ++       ++ EL      V    
Sbjct: 181 ETRLKD-TREHLQRLADLQAELARQVEKLDKQAATAAQYRQWVDELTELENVLNYVNWQN 239

Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
           A  +   A         Q E+F   +  L   L    D      ++ ++         + 
Sbjct: 240 ALADADRASKEHTAAQFQLEHFTEHQQQLNEQLQSLRDTEQEQQQQNHSLNQEHALLREQ 299

Query: 260 MSR 262
           ++R
Sbjct: 300 IAR 302



 Score = 36.4 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +    +
Sbjct: 1052 GKKNSTIYLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCNL 1106

Query: 338  VTDIGSQI 345
            V ++ +Q 
Sbjct: 1107 VKEMSAQT 1114


>gi|296127079|ref|YP_003634331.1| ATPase [Brachyspira murdochii DSM 12563]
 gi|296018895|gb|ADG72132.1| putative ATPase [Brachyspira murdochii DSM 12563]
          Length = 341

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          IK L I  FR +  L++    +    VG N  GKT+ILEA+
Sbjct: 2  IKDLYIENFRGFDKLKIDNIKKINFLVGKNNCGKTSILEAL 42


>gi|225621164|ref|YP_002722422.1| putative ATPase [Brachyspira hyodysenteriae WA1]
 gi|225215984|gb|ACN84718.1| putative ATPase [Brachyspira hyodysenteriae WA1]
          Length = 345

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          IK L I  FR +  L++    +    VG N  GKT++LEA+
Sbjct: 6  IKNLYIENFRGFDKLKIDNIKKINFLVGKNNCGKTSVLEAL 46


>gi|224059602|ref|XP_002299928.1| predicted protein [Populus trichocarpa]
 gi|222847186|gb|EEE84733.1| predicted protein [Populus trichocarpa]
          Length = 974

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 93/275 (33%), Gaps = 33/275 (12%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---R 57
           M     I  + +  F  Y  L     ++  + +G NG GK++I+ AI+    G      R
Sbjct: 25  MPGN--IIEIELRNFMTYDCLVCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGR 82

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
             S     + G  S      ++       D  I +  R D   +   + +  +    E+ 
Sbjct: 83  ATSIGAYVKRGEESG---HIKISLRGSTKDEKITIIRRIDAHNKSEWLFNGKVASKKEVT 139

Query: 118 KHLRISWLVPSMDRIFSGLSMER-RRFLDRMVFAI------------DPRHRRRMIDFER 164
           + ++       ++ +   L  +R   F       +             P   R ++D  R
Sbjct: 140 EIMQQ--FNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPIQHRALVDKSR 197

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            ++     +       +   ++ A++ E  V+    R  ++    S+      K+  P +
Sbjct: 198 ELKTIEMAVKRNGETLNQLKALNAEL-EKDVERVRQREVLLKKAESM------KKKLPWL 250

Query: 225 K---LSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           K   +        + ++      EE AK L + R+
Sbjct: 251 KYDAIKADYLKAKEAEKDVKQKLEEAAKTLNNLRE 285


>gi|218283537|ref|ZP_03489527.1| hypothetical protein EUBIFOR_02117 [Eubacterium biforme DSM 3989]
 gi|218215805|gb|EEC89343.1| hypothetical protein EUBIFOR_02117 [Eubacterium biforme DSM 3989]
          Length = 975

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 85/254 (33%), Gaps = 48/254 (18%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A    + FD   T  VG NG GK+N+ +AI   L     +  R  +
Sbjct: 1   MFLKRIELQGFKSFADKTVIQFDQDITGIVGPNGCGKSNVNDAIRWVLGEQSVKSLRSGT 60

Query: 61  Y-ADVTRIGSP-----SFFSTFARVEG-----MEGLADISIKLETRDDRSVRCLQINDVV 109
             +D+   GS      +        +           +I I  +     +     IN   
Sbjct: 61  NMSDIIFSGSEYRKPVNMARVTLVFDNSTRVFDSDFDEIEITRQILRANNEASYFINKTP 120

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMI 160
            R + ++N  +  + L      I +             +RR   +             + 
Sbjct: 121 CR-LKDINDLVMDTGLGKDSLSIITQGNISSFADAKPEDRRSLFEEAAG---------VA 170

Query: 161 DFERLMRGRNRLLTEGYFD----SSWCSSIEAQM------AELGVKINIARVEM----IN 206
            +++  +     L +   +          +E Q+      A+   K    R ++    I+
Sbjct: 171 KYKKRKKISLSKLEQTKENLDRLQDILDELERQIGPLEKQAKKAEKYISLRDKLSKIEIS 230

Query: 207 ALSSLIMEYVQKEN 220
            L   I +Y +K N
Sbjct: 231 VLVEDIDQYNEKIN 244


>gi|157863934|ref|XP_001687517.1| structural maintenance of chromosome (SMC) [Leishmania major
          strain Friedlin]
 gi|68223728|emb|CAJ01960.1| putative structural maintenance of chromosome (SMC) [Leishmania
          major strain Friedlin]
          Length = 1210

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY- 61
          +++K + I  F++YA  +             G NG GK+NI +AI F+      +R    
Sbjct: 1  MRVKSIVIDGFKSYAHRKELADLSPHFNAITGLNGSGKSNIFDAICFVMGITNLKRVRAE 60

Query: 62 --ADVT-RIGSPSFFSTFARVE 80
             ++  R G+    +    +E
Sbjct: 61 DPRELIFRAGTTGVHAARVTIE 82


>gi|67609873|ref|XP_667068.1| hypothetical protein [Cryptosporidium hominis TU502]
 gi|54658159|gb|EAL36835.1| hypothetical protein Chro.80351 [Cryptosporidium hominis]
          Length = 1268

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV- 64
          +IK + I++   +  + +       +  G NG GK++++ AI+ L    G +    A++ 
Sbjct: 26 QIKRVIINDIGGHEFIDISLLPGVNLITGGNGSGKSSLVSAIALLCGWSGRKAGKDANLN 85

Query: 65 --TRIGSP 70
             RIG+ 
Sbjct: 86 KYVRIGAN 93


>gi|260429350|ref|ZP_05783327.1| chromosome segregation protein SMC [Citreicella sp. SE45]
 gi|260419973|gb|EEX13226.1| chromosome segregation protein SMC [Citreicella sp. SE45]
          Length = 1169

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +    L ++ F+++     LV     T  VG NG GK+N+LEA+ ++   +  +  R A 
Sbjct: 19  LHFSRLRLTGFKSFVDPTDLVIADGLTGVVGPNGCGKSNLLEALRWVMGETRAKAMRGAG 78

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+      +F      ++  + +A         I++  R  R V    + N  
Sbjct: 79  MEDVIFAGASTRPARNFAEVCLTIDNSDRVAPAGFNDSDQIEIVRRITRDVGSAYKANSK 138

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + +     RRR L+
Sbjct: 139 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKNRRRILE 183


>gi|257466429|ref|ZP_05630740.1| chromosome partition protein smc [Fusobacterium gonidiaformans
          ATCC 25563]
 gi|315917585|ref|ZP_07913825.1| chromosome partition protein smc [Fusobacterium gonidiaformans
          ATCC 25563]
 gi|313691460|gb|EFS28295.1| chromosome partition protein smc [Fusobacterium gonidiaformans
          ATCC 25563]
          Length = 1172

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          + +K + +  F+++   + + F+   T  VG NG GK+NIL+A+ ++   + ++     +
Sbjct: 1  MYLKAVEVHGFKSFGEKVYIEFNQGITSIVGPNGSGKSNILDAVLWVLGEQSYKNIRAKE 60


>gi|255531047|ref|YP_003091419.1| DNA repair protein RecN [Pedobacter heparinus DSM 2366]
 gi|255344031|gb|ACU03357.1| DNA repair protein RecN [Pedobacter heparinus DSM 2366]
          Length = 555

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 63/187 (33%), Gaps = 20/187 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L+I  +    S+ L  D+   I  G+ G GK+ +L A+S +    +  + F      
Sbjct: 4   LQKLSIRNYALIDSVELELDSGLNIITGETGAGKSIMLGALSLILGQRAETKYFFNQDKK 63

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-----SVRCLQINDVVIRVVDELN 117
            +       F    A ++ +    D+    E+   R           IND  + +     
Sbjct: 64  CII---EGHFLLVSAHLQALFEENDLDFHKESTLRREITTDGKSRAFINDTPVTLTVMKQ 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE---RLMRGRNRLLT 174
              R+  +      +       +   +D +           + D+    +L + + R LT
Sbjct: 121 VGERLIDIHSQHATLEVNDPEFQLSVVDTLAGHQ-----PLLQDYRNQFKLYKQQQRQLT 175

Query: 175 EGYFDSS 181
           E    + 
Sbjct: 176 ELQNKAD 182


>gi|170112746|ref|XP_001887574.1| structural maintenance of chromosome protein 3 [Laccaria bicolor
          S238N-H82]
 gi|164637476|gb|EDR01761.1| structural maintenance of chromosome protein 3 [Laccaria bicolor
          S238N-H82]
          Length = 1240

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK L I  F++Y        F  +H + VG NG GK+N   AI F
Sbjct: 1  MYIKTLTIQGFKSYRDQTQIEPFSPRHNVVVGRNGSGKSNFFSAIRF 47



 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 108/306 (35%), Gaps = 40/306 (13%)

Query: 84   GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM----------DRIF 133
              ++ S  +  +   + R L    ++    DE N+ +R   ++P            DR+ 
Sbjct: 902  QQSEDSRSISKQQKTTERYLAKRQMLTTRKDECNRSIRDLGVLPEEAFEKYINDKADRLV 961

Query: 134  SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
                  +   ++  +      +++    +    + R++LL           SIE  +  L
Sbjct: 962  K-----KLHTVNEGLKKFAHVNKKAFEQYSNFTKQRDQLLKRREDLDKSAESIEELVQVL 1016

Query: 194  GVKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
              + + A       ++    E  +K       +L +   +D   ++     ++       
Sbjct: 1017 DQRKDEAIERTFKQVAKNFEEVFEKLVPAGRGRLIIQRRIDQGMEEDGEETQQS------ 1070

Query: 253  DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
                +D+ +  ++     S +     D+ + I   S G++ +V +    A          
Sbjct: 1071 ---TIDNYTGVSIKVSFNSKV-----DEGLRIQQLSGGQKSLVALATVFA-----IQKCD 1117

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDKSVFDSLNETAKFMRI--SN 369
             AP  L DEI A+LD   R A+  ++  + S   F+T T     + L    KF  +  +N
Sbjct: 1118 PAPFYLFDEIDANLDAQYRTAVASMIQSLASTAQFITTT--FRPEMLVTADKFYGVLFNN 1175

Query: 370  HQALCI 375
             +   I
Sbjct: 1176 QKVSSI 1181


>gi|154492226|ref|ZP_02031852.1| hypothetical protein PARMER_01860 [Parabacteroides merdae ATCC
           43184]
 gi|154087451|gb|EDN86496.1| hypothetical protein PARMER_01860 [Parabacteroides merdae ATCC
           43184]
          Length = 554

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 24/206 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F    SL + FD   ++  G+ G GK+ IL A+S +    + G+  +  S  
Sbjct: 2   LKSLFIRNFVLIDSLDIKFDKGFSVITGETGAGKSIILGALSLVLGQRADGKSIKNGSEK 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADIS-------IKLETRDDRSVRCLQIND-VVIRVVD 114
            V       F  +  ++E      D+        ++ E       R    +  V + VV 
Sbjct: 62  CVI---EAVFDVSRYKLEEFFLTNDLEYDAEICILRRELFASGKSRAFVNDSPVPLSVVK 118

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM------VFAIDPRHRRRMIDFERLMRG 168
           EL    R+  +      +  G +  + + +D M      +      + R +   ++ ++ 
Sbjct: 119 ELGS--RLIDIHSQHQNLLLGDNRFQLKVIDVMAENDILLILYRKEYSRYLS-LKKELKE 175

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG 194
                 +   +  +      Q+A+ G
Sbjct: 176 LTEKALQTKQEEDYVRFQLEQLADAG 201


>gi|194466512|ref|ZP_03072499.1| DNA repair protein RecN [Lactobacillus reuteri 100-23]
 gi|194453548|gb|EDX42445.1| DNA repair protein RecN [Lactobacillus reuteri 100-23]
          Length = 559

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 64/198 (32%), Gaps = 23/198 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L F  Q T+  G+ G GK+ I++A+  L+ GRG       +  R
Sbjct: 2   LQELTIDNLAIIKHLTLTFADQMTVLTGETGAGKSIIIDAVGLLAGGRG-----SQEFIR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
            G                 F       G++    I I            ++IN  +I   
Sbjct: 57  RGEEKLSLQGQFAIPDDPEFDKLLESLGIDHEDGILIVSREIHRNGRNIIRINGQLINTA 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA-IDPRHRRRMIDFERLMRGRN 170
            + ++   L          ++           LD+     + P  +    +++   + + 
Sbjct: 117 TLRQIGAGLVDIQGQNEHQQLMQ--PETHLGMLDQFAAKEVQPLLQDYQEEYQAYSKLKA 174

Query: 171 RLLTEGYFDSSWCSSIEA 188
            +  +   +  W   ++ 
Sbjct: 175 AVNKKQANEQQWAQRLDM 192


>gi|85703756|ref|ZP_01034860.1| DNA repair protein RecN [Roseovarius sp. 217]
 gi|85672684|gb|EAQ27541.1| DNA repair protein RecN [Roseovarius sp. 217]
          Length = 549

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRTLEIRDMLIIDRLDLTFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRV 112
            G+             E  A  I  +    D+ ++   ++N    R 
Sbjct: 57  NGADQGEVIAEFDLTAEHPARAILREAGLPDEEALILRRVNSADGRK 103


>gi|89055238|ref|YP_510689.1| DNA repair protein RecN [Jannaschia sp. CCS1]
 gi|88864787|gb|ABD55664.1| DNA replication and repair protein RecN [Jannaschia sp. CCS1]
          Length = 549

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 51/155 (32%), Gaps = 21/155 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      AD+ R
Sbjct: 2   LRHLDIRDMLIIDRLELAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RADLVR 56

Query: 67  IGS------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--V 112
            G+                +     E    ++D  I          +   +ND  +   V
Sbjct: 57  AGAAQGEVVAEFDLPDDHPALVVLEEAGLPISDELILRRINTPEGRKTAWVNDRRVSGEV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147
           +  L+  L           +        R  LD  
Sbjct: 117 LRALSDVLVELHGQQDDRGLL--DPKNHRTMLDDF 149


>gi|322488151|emb|CBZ23397.1| structural maintenance of chromosome (SMC),putative [Leishmania
          mexicana MHOM/GT/2001/U1103]
          Length = 1212

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY- 61
          +++K + I  F++YA  +             G NG GK+NI +AI F+      +R    
Sbjct: 1  MRVKSIVIDGFKSYAHRKELADLSPHFNAITGLNGSGKSNIFDAICFVMGITNLKRVRAE 60

Query: 62 --ADVT-RIGSPSFFSTFARVE 80
             ++  R G+    +    +E
Sbjct: 61 DPRELIFRAGTTGVHAARVTIE 82


>gi|309805482|ref|ZP_07699527.1| DNA repair protein RecN [Lactobacillus iners LactinV 09V1-c]
 gi|308165133|gb|EFO67371.1| DNA repair protein RecN [Lactobacillus iners LactinV 09V1-c]
          Length = 559

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 80/210 (38%), Gaps = 33/210 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F    T+ +G+ G GK+ I++A+S L   R     +  D+ R
Sbjct: 2   LVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSR-----AQIDMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F+  +  + L D+ I+     D            +    ++IN     I
Sbjct: 57  SGESKAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL----- 165
            ++  L+++L        M  +           ++ +    +   +  +  ++++     
Sbjct: 117 NILKNLSQYLVDIHGQRDMQILMDQDL-----HINLLDNYANNDFKESLCQYQKIYAKWQ 171

Query: 166 -MRGRNRLLTEGYFDSSWC-SSIEAQMAEL 193
            ++ R   + +   + +     +E Q+ EL
Sbjct: 172 EIKQRLSAIRKNAQEIAQKHDILEYQLNEL 201


>gi|258566539|ref|XP_002584014.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237907715|gb|EEP82116.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 978

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 88/307 (28%), Gaps = 52/307 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +  L +         VG NG GK+ +L A++     +     R  S   
Sbjct: 83  IERVDCYNFMCHEHLSMELGPLINFIVGKNGSGKSAVLTALTLCLGAKASTTNRGQSLKS 142

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLET-------RDDRSVRCLQINDVVIRVVDEL 116
             + G  +  +   R++     A +  +                   +I +   RVV   
Sbjct: 143 FIKEGKETA-TIIVRIKNQGDSAYLPHEFGRCIIVERHFSRSKASGFRIKNASGRVVSTK 201

Query: 117 NKHL-------------RISWLVPSMDR--IFSGLSMERRRFL--DRMVFAIDPRH---- 155
              L              ++ L   M R  + +    E+ +F      +  +D  +    
Sbjct: 202 RGDLDSITDYFALQIDNPMNVLSQDMARQFLSTSSPAEKYKFFVKGVQLEQLDQDYQLIE 261

Query: 156 ----------------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA-ELGVKIN 198
                            + + +     R +  L        +   S+ AQMA     +  
Sbjct: 262 ESMEHVNAKVAAHSGELKDLEEKRDKARAKLALSDRHEGIRARLRSLRAQMAWAQVEEQE 321

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY--AKKLFDGRK 256
             R    + L+    +    E             D  +  +   ++E     + L D R 
Sbjct: 322 RIRDSFDDELAKATEKITTLEGEVEASDRFYQEADNAYGVAETLVQEAKSELECLSDSR- 380

Query: 257 MDSMSRR 263
            D  S+ 
Sbjct: 381 KDIQSKY 387


>gi|190341591|gb|ACE74872.1| RecN [Yersinia enterocolitica]
          Length = 553

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 87/278 (31%), Gaps = 36/278 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 2   LTQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAIDALGLCLGSRS-----DGSMVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
           +G+                   +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  LGATRADICARFSLADTPSARQWLEDNHLDDSNECLLRRAIGSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRM 159
            + EL +HL       +   +       +++ LD            +  + I  +  R +
Sbjct: 116 QLRELGQHLIQIHGQHAHQLLLR--PDHQKQLLDAYANQSVLLTEMKAAYQIWHQSCRAL 173

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQK 218
              ++    RN       +     +S   Q  E   + I   R+     L SL  + +Q 
Sbjct: 174 ALHQQQSLERNARHELLQYQLKELNSFAPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQL 233

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            +       L+     K+  +  A  +E    L +  +
Sbjct: 234 LSDDEQNNILSQLYSAKYQLTELAGMDEQFNNLLNMLE 271


>gi|198452537|ref|XP_001358825.2| GA18949 [Drosophila pseudoobscura pseudoobscura]
 gi|198131970|gb|EAL27968.2| GA18949 [Drosophila pseudoobscura pseudoobscura]
          Length = 1117

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 12/128 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62
           K+  +++  F  + S  + F       VG NG GK+  + A++    G      R AS  
Sbjct: 93  KVISIHLENFMCHESFTVEFGPNTNFLVGKNGSGKSATITALTVGMGGNARATSRAASVT 152

Query: 63  DVTRIGSPSFFSTFAR-------VEGMEGLADISIKLETRDDRSVRCLQ--INDVVIRVV 113
            + + G  S               +       I++    R   S   L+     +V + +
Sbjct: 153 KLIKNGETSAKIEITLCNVGLSPFDAEHMGPHITVVRHIRQSSSSYELKDARGKIVSKKL 212

Query: 114 DELNKHLR 121
           D++ + LR
Sbjct: 213 DDVKRLLR 220


>gi|154292859|ref|XP_001546997.1| hypothetical protein BC1G_14462 [Botryotinia fuckeliana B05.10]
 gi|150845739|gb|EDN20932.1| hypothetical protein BC1G_14462 [Botryotinia fuckeliana B05.10]
          Length = 1227

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK +NI  F++Y    L   F     + VG NG GK+N   AI F
Sbjct: 2  VYIKQINIQGFKSYKDQTLIDEFSPATNVIVGRNGSGKSNFFAAIRF 48



 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 65/184 (35%), Gaps = 18/184 (9%)

Query: 161  DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE- 219
             + +    R+ L           SSI+  +  L  + + A       +S    +  ++  
Sbjct: 979  QYNQFTTQRDSLTKRRKELDDSQSSIQELVEVLDQRKDEAIERTFKQVSREFAQIFERLV 1038

Query: 220  NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
                 +L +    D +  +   + +E            DS+     +G   S     + D
Sbjct: 1039 PAGRGRLVIQRKTDRRVREEEDSDEEA----------RDSVENYVGVGISVS-FNSKHDD 1087

Query: 280  KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
            +   I   S G++ +  + +  A           AP  L DEI A+LD   R A+ +++ 
Sbjct: 1088 QQ-RIQQLSGGQKSLCALALVFA-----IQQCDPAPFYLFDEIDANLDAQYRTAVAQMLK 1141

Query: 340  DIGS 343
            +I +
Sbjct: 1142 EISA 1145


>gi|222056677|ref|YP_002539039.1| chromosome segregation protein SMC [Geobacter sp. FRC-32]
 gi|221565966|gb|ACM21938.1| chromosome segregation protein SMC [Geobacter sp. FRC-32]
          Length = 1176

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +KIK ++I  F++ +  + L F    T  VG NG GK+N+++AI ++      +  R   
Sbjct: 1  MKIKRVDIIGFKSFHDKVSLDFQQCITGIVGPNGCGKSNVVDAIRWVMGEQSAKNLRGKQ 60

Query: 61 YADVTRIGSPS 71
            D+   GS S
Sbjct: 61 MEDIIFGGSES 71


>gi|154707358|ref|YP_001424868.1| chromosome partition protein smc [Coxiella burnetii Dugway
           5J108-111]
 gi|154356644|gb|ABS78106.1| chromosome partition protein smc [Coxiella burnetii Dugway
           5J108-111]
          Length = 1169

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + ++ F+++    L+         VG NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1   MYLKTIKLAGFKSFVDPTLIPIRGSMNAIVGPNGCGKSNVVDAVRWVIGETSAKQLRGQS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQIND 107
            +DV   G+ S            F ++  R+ G      +I+I+ E   D       IN 
Sbjct: 61  MSDVIFNGTTSRKPVGKASIELHFDNSEGRIGGEYAKYGEIAIRREVERDGQSNYF-ING 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 AHVRRRD 126


>gi|54302573|ref|YP_132566.1| ATP-dependent endonuclease [Photobacterium profundum SS9]
 gi|46915995|emb|CAG22766.1| hypothetical ATP-dependent endonuclease of the OLD family
          [Photobacterium profundum SS9]
          Length = 548

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + ++ + +S FR    L L F+ Q ++ +G+N  GK+++L+A+S 
Sbjct: 1  MHLERIEVSGFRGIKRLSLSFN-QLSVLIGENAWGKSSLLDALSI 44


>gi|307289413|ref|ZP_07569367.1| DNA repair protein RecN [Enterococcus faecalis TX0109]
 gi|306499668|gb|EFM69031.1| DNA repair protein RecN [Enterococcus faecalis TX0109]
 gi|315165150|gb|EFU09167.1| DNA repair protein RecN [Enterococcus faecalis TX1302]
          Length = 557

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 101/288 (35%), Gaps = 37/288 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + + A+  ++ +   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              +L G  D   D+   ++ E     L     +DS  +        +
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE-----LASIESLDSEYKTLSDTVQNA 275


>gi|255722029|ref|XP_002545949.1| hypothetical protein CTRG_00730 [Candida tropicalis MYA-3404]
 gi|240136438|gb|EER35991.1| hypothetical protein CTRG_00730 [Candida tropicalis MYA-3404]
          Length = 1253

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 6  KIKFLNISEFRNYASLR-LVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          ++  L +  F++Y     + F  +  T  +G NG GK+N+++AISF+        R  + 
Sbjct: 3  RLIGLELYNFKSYKGKSVIGFGSSYFTSIIGPNGAGKSNMMDAISFVLGVNSYHLRSHNL 62

Query: 62 ADVTRIGSPS 71
           D+   G  S
Sbjct: 63 KDLIYRGRKS 72


>gi|163855255|ref|YP_001629553.1| RecF protein [Bordetella petrii DSM 12804]
 gi|163258983|emb|CAP41282.1| RecF protein [Bordetella petrii]
          Length = 590

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +++  L++S F+   S  L          GDN  GK+ I EA+     G   R +   ++
Sbjct: 1  MRLTNLSVSNFQGVKSAELPLPTAIGFITGDNYAGKSTIAEAVRMALLGSAERVSLKKEL 60

Query: 65 ---TRIGSPSFFSTFARVEG 81
              R G+    S    V+G
Sbjct: 61 GQVVRDGAK-LGSAAVEVDG 79


>gi|152971465|ref|YP_001336574.1| recombination and repair protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956314|gb|ABR78344.1| protein used in recombination and DNA repair [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 553

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 31/207 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E   +  ++     D   R   IN   V + 
Sbjct: 57  RGATRADLCARFALKDTPAAQRWLEENQLESGRECLLRRVISADGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +   +       ++  LD       +      H R+     R +
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLTK--PEHQKTLLDGYTGEYALTQRMAEHYRQWHQSCREL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               +   E    +        Q+ EL
Sbjct: 174 AQHQQQSQERAARADLLQY---QLKEL 197


>gi|29653880|ref|NP_819572.1| chromosome segregation protein SMC [Coxiella burnetii RSA 493]
 gi|28375461|emb|CAD66594.1| SMC protein [Coxiella burnetii]
 gi|29541143|gb|AAO90086.1| chromosome partition protein [Coxiella burnetii RSA 493]
          Length = 1169

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + ++ F+++    L+         VG NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1   MYLKTIKLAGFKSFVDPTLIPIRGSMNAIVGPNGCGKSNVVDAVRWVIGETSAKQLRGQS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQIND 107
            +DV   G+ S            F ++  R+ G      +I+I+ E   D       IN 
Sbjct: 61  MSDVIFNGTTSRKPVGKASIELHFDNSEGRIGGEYAKYGEIAIRREVERDGQSNYF-ING 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 AHVRRRD 126


>gi|209881009|ref|XP_002141943.1| structural maintenance of chromosomes protein [Cryptosporidium
           muris RN66]
 gi|209557549|gb|EEA07594.1| structural maintenance of chromosomes protein, putative
           [Cryptosporidium muris RN66]
          Length = 1378

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 33/176 (18%)

Query: 7   IKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           IK + +  F++Y        F  + T  VG NG GK+N+++A+SF+        R  +  
Sbjct: 30  IKMMELENFKSYKGKHKIGPFSKRFTCIVGPNGSGKSNLMDALSFVLGVSSGQIRGTNIK 89

Query: 63  DVT--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           D    + G     +     E     + +S+     +D                D+  +  
Sbjct: 90  DFIFRQEGQNDDNALSTNDELNYASSSVSLIFGHFNDE---------------DQSIQFC 134

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           R                    RF+          + +++ +   L++ RN L+ +G
Sbjct: 135 RKIL------------PSGATRFIINEKITSQESYLKKLEELNILVKARNFLVFQG 178


>gi|161829706|ref|YP_001596471.1| chromosome segregation protein SMC [Coxiella burnetii RSA 331]
 gi|161761573|gb|ABX77215.1| chromosome segregation protein SMC [Coxiella burnetii RSA 331]
          Length = 1169

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + ++ F+++    L+         VG NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1   MYLKTIKLAGFKSFVDPTLIPIRGSMNAIVGPNGCGKSNVVDAVRWVIGETSAKQLRGQS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQIND 107
            +DV   G+ S            F ++  R+ G      +I+I+ E   D       IN 
Sbjct: 61  MSDVIFNGTTSRKPVGKASIELHFDNSEGRIGGEYAKYGEIAIRREVERDGQSNYF-ING 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 AHVRRRD 126


>gi|124506421|ref|XP_001351808.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
 gi|23504834|emb|CAD51615.1| conserved Plasmodium protein, unknown function [Plasmodium
           falciparum 3D7]
          Length = 1849

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
           KI  L I  F N+ +L L F++   I +G NG GK+ I +A++ 
Sbjct: 227 KIIKLRIRNFLNHENLELTFNSYKNIIIGKNGRGKSAIAQAVAV 270


>gi|33860617|ref|NP_892178.1| SMC ATPase superfamily chromosome segregation protein
          [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
 gi|33633559|emb|CAE18516.1| putative chromosome segregation protein, SMC ATPase superfamily
          [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
          Length = 1194

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  +    F+++  S+++  +   T+  G NG GK+NIL+ I F   L+  RG R   
Sbjct: 2  VYINQVEFENFKSFGGSVKIPLEEGFTVVTGPNGSGKSNILDGILFCLGLANSRGMRAER 61

Query: 61 YADVTRIG-------SPSFFSTFARVEGMEGLADI 88
            D+           S +F S    +E      D+
Sbjct: 62 LPDLINNSKVKEGKASETFVSVKFNIEDWSPREDV 96


>gi|68471834|ref|XP_719960.1| potential nuclear cohesin complex SMC ATPase fragment [Candida
           albicans SC5314]
 gi|46441807|gb|EAL01101.1| potential nuclear cohesin complex SMC ATPase fragment [Candida
           albicans SC5314]
          Length = 1026

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F+ Y +   +        + VG NG GK+N   AI   LS          
Sbjct: 1   MHIKKIIIQGFKTYKNTTTIDLLSPHCNVVVGRNGSGKSNFFAAIRFVLSDAYTHMSREE 60

Query: 62  AD-VTRIGSPSFFSTFARV-----EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
              +   GS +  S +  +     +G   +    I +            ++       D
Sbjct: 61  RQGLIHEGSGTVMSAYVEIIFDNTDGRFPINKPEISIRRTIGLKKDDYSLDGKSATRSD 119


>gi|312874413|ref|ZP_07734443.1| DNA repair protein RecN [Lactobacillus iners LEAF 2052A-d]
 gi|311090025|gb|EFQ48439.1| DNA repair protein RecN [Lactobacillus iners LEAF 2052A-d]
          Length = 559

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 80/210 (38%), Gaps = 33/210 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F    T+ +G+ G GK+ I++A+S L   R     +  D+ R
Sbjct: 2   LVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSR-----AQIDMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F+  +  + L D+ I+     D            +    ++IN     I
Sbjct: 57  SGESKAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL----- 165
            ++  L+++L        M  +           ++ +    +   +  +  ++++     
Sbjct: 117 NILKNLSQYLVDIHGQRDMQILMDQDL-----HINLLDNYANNDFKESLCQYQKIYAKWQ 171

Query: 166 -MRGRNRLLTEGYFDSSWC-SSIEAQMAEL 193
            ++ R   + +   + +     +E Q+ EL
Sbjct: 172 EIKQRLSAIRKNAQEIAQKHDILEYQLNEL 201


>gi|291320364|ref|YP_003515627.1| p115-like ABC transporter ATP-Binding protein [Mycoplasma
           agalactiae]
 gi|290752698|emb|CBH40672.1| P115 Like (Mycoplasma hyorhinis) ABCtransporter ATP Binding Protein
           [Mycoplasma agalactiae]
          Length = 995

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 14/124 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+  +    F+++A  + L F+      VG NG GK+NI +AI ++   R     R  +
Sbjct: 1   MKLIKVEAHGFKSFAEPITLHFNGGVAGIVGPNGSGKSNINDAIKWVLGERSAKELRGDN 60

Query: 61  YADVTRIGSPSF--------FSTFARVEGMEGLADISIKLETRDDR--SVRCLQINDVVI 110
             DV   GS +           TF   +G   +   +I +    +R   +    +N  V 
Sbjct: 61  MDDVIFAGSKTAKPMDKAVVTLTFDNKDGQSSINHETITISRVLERGSGINQYYLNGEVC 120

Query: 111 RVVD 114
           R  D
Sbjct: 121 RQKD 124


>gi|255690062|ref|ZP_05413737.1| DNA repair protein RecN [Bacteroides finegoldii DSM 17565]
 gi|260624339|gb|EEX47210.1| DNA repair protein RecN [Bacteroides finegoldii DSM 17565]
          Length = 553

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 65/199 (32%), Gaps = 13/199 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + FD   ++  G+ G GK+ IL AI  L    +  +  RR +  
Sbjct: 2   LRSLYIQNYALIEKLDISFDTGFSVITGETGAGKSIILGAIGLLLGQRADVKSIRRGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +   R   S      F     +E   +  ++ E +     R   IND    +       
Sbjct: 62  CIIEARFDISAYGMRPFFEDNELEYDEECILRREVQASGKSRAF-INDTPASLAQVKELG 120

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMV---FAIDPRH--RRRMIDFERLMRGRNRLLT 174
            R+  +      +       +   LD +     A++  H         ER +     L  
Sbjct: 121 ERLIDVHSQHQNLLLNKEGFQLNVLDILAHNDTALEKYHTCYAGWKQTERELADLVSLAE 180

Query: 175 EGYFDSSWCSSIEAQMAEL 193
           +   D  +      Q+ E 
Sbjct: 181 KSRSDEDYIRFQLEQLEEA 199


>gi|119510145|ref|ZP_01629284.1| Exonuclease SbcC [Nodularia spumigena CCY9414]
 gi|119465206|gb|EAW46104.1| Exonuclease SbcC [Nodularia spumigena CCY9414]
          Length = 1008

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 2/90 (2%)

Query: 9  FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L +  F +Y    L F   HT    G NG GK+++LEAI++   G+  R     DV   
Sbjct: 5  QLILKNFLSYRDATLDFRGLHTACICGSNGAGKSSLLEAITWAIWGQS-RAGVEDDVIHS 63

Query: 68 GSPSFFSTFARVEGMEGLADISIKLETRDD 97
          G+      +      +    I  ++     
Sbjct: 64 GAKEVRVDYVFQCNQQKYRVIRTRVRGASG 93


>gi|315653405|ref|ZP_07906327.1| DNA repair protein RecN [Lactobacillus iners ATCC 55195]
 gi|315489330|gb|EFU78970.1| DNA repair protein RecN [Lactobacillus iners ATCC 55195]
          Length = 559

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 80/210 (38%), Gaps = 33/210 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F    T+ +G+ G GK+ I++A+S L   R     +  D+ R
Sbjct: 2   LVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSR-----AQIDMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F+  +  + L D+ I+     D            +    ++IN     I
Sbjct: 57  SGESKAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL----- 165
            ++  L+++L        M  +           ++ +    +   +  +  ++++     
Sbjct: 117 NILKNLSQYLVDIHGQRDMQILMDQDL-----HINLLDNYANNDFKESLCQYQKIYAKWQ 171

Query: 166 -MRGRNRLLTEGYFDSSWC-SSIEAQMAEL 193
            ++ R   + +   + +     +E Q+ EL
Sbjct: 172 EIKQRLSAIRKNAQEIAQKHDILEYQLNEL 201


>gi|307199390|gb|EFN80015.1| Structural maintenance of chromosomes protein 3 [Harpegnathos
           saltator]
          Length = 1201

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 94/326 (28%), Gaps = 43/326 (13%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYAD 63
           +K + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R     
Sbjct: 2   LKQVIIQGFKSYREQTVVEPFDPRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQRQ 61

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI-------SIKLETRDDRSVRCLQINDVVIRVVDEL 116
                        A VE +   +D         + L            +N  ++   D +
Sbjct: 62  ALLHEGTGPRVISAHVEIIFDNSDGRLPIDKDEVYLRRVIGSKKDQYFLNKKIVTRNDVM 121

Query: 117 N------------------KHLRISWLVPSMDR--IFSGLSMER----RRFLDRMVFAID 152
           N                    +      P   R  +   ++  R    RR   + +    
Sbjct: 122 NLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDDRREESKSILKET 181

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
                ++ DF R +  R + L E   +       + Q   L   I+   ++        +
Sbjct: 182 EGKLEKIEDFLRTIEERLKTLEEEKEELKEYQRWDKQRRCLEYTIHERELKENKRKLEEL 241

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCA-LKEEYAKKLFDGRKMD--------SMSRR 263
            E          +L        +  ++    LKE   +      + D         +  +
Sbjct: 242 EESRANSGAEQARLGAEAKTAQEMVRAATKRLKEAKKEVQSAKEERDTLSAEQQQLLKEK 301

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGST 289
           T +    +DL+ +      +      
Sbjct: 302 TKLTLTINDLLEEVKGDNDSRKRAQQ 327



 Score = 40.3 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QI 345
            S G++ +V + +  A           AP  L DEI   LD   R A+  ++ ++ S  Q 
Sbjct: 1100 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVADMIHELSSDAQ- 1153

Query: 346  FMTGTDKSVFDSLNETAKFMRIS 368
            F+T T     + L+   KF  + 
Sbjct: 1154 FITTT--FRPELLHHANKFYGVK 1174


>gi|238896061|ref|YP_002920797.1| recombination and repair protein [Klebsiella pneumoniae NTUH-K2044]
 gi|238548379|dbj|BAH64730.1| DNA repair protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 553

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 31/207 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E   +  ++     D   R   IN   V + 
Sbjct: 57  RGATRADLCARFALKDTPAAQRWLEENQLESGRECLLRRVISADGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +   +       ++  LD       +      H R+     R +
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLTK--PEHQKTLLDGYTGEYALTQRMAEHYRQWHQSCREL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               +   E    +        Q+ EL
Sbjct: 174 AQHQQQSQERAARADLLQY---QLKEL 197


>gi|323340047|ref|ZP_08080313.1| hypothetical protein HMPREF0542_10744 [Lactobacillus ruminis ATCC
          25644]
 gi|323092553|gb|EFZ35159.1| hypothetical protein HMPREF0542_10744 [Lactobacillus ruminis ATCC
          25644]
          Length = 438

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAI 47
          +KI  L I   +   +++L       TI  GDN  GKT++L+AI
Sbjct: 3  MKIAELQIENVKRVKAVKLEPSENGLTIIGGDNAQGKTSVLDAI 46


>gi|153207823|ref|ZP_01946423.1| chromosome segregation protein SMC [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218837|ref|YP_002305624.1| chromosome partition protein [Coxiella burnetii CbuK_Q154]
 gi|120576375|gb|EAX32999.1| chromosome segregation protein SMC [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212013099|gb|ACJ20479.1| chromosome partition protein [Coxiella burnetii CbuK_Q154]
          Length = 1169

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + ++ F+++    L+         VG NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1   MYLKTIKLAGFKSFVDPTLIPIRGSMNAIVGPNGCGKSNVVDAVRWVIGETSAKQLRGQS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQIND 107
            +DV   G+ S            F ++  R+ G      +I+I+ E   D       IN 
Sbjct: 61  MSDVIFNGTTSRKPVGKASIELHFDNSEGRIGGEYAKYGEIAIRREVERDGQSNYF-ING 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 AHVRRRD 126


>gi|170732066|ref|YP_001764013.1| DNA repair protein RecN [Burkholderia cenocepacia MC0-3]
 gi|169815308|gb|ACA89891.1| DNA repair protein RecN [Burkholderia cenocepacia MC0-3]
          Length = 549

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 30/259 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  ++F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFSVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++     A+ S+ L    D + R    IN     +  + 
Sbjct: 57  TGCGRADITAEFTPHDRVARWLDEHAFDAEDSVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 ELGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAD--AANVARAWRVWRDATQAID 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+  + +  H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQAGEW-DEVSNEHKRLSHSANLIE 223

Query: 235 KFDQSFCALKEEYAKKLFD 253
               +  AL E     L  
Sbjct: 224 GVRGALNALSESDDAMLAQ 242


>gi|114047078|ref|YP_737628.1| chromosome segregation protein SMC [Shewanella sp. MR-7]
 gi|113888520|gb|ABI42571.1| chromosome segregation protein SMC [Shewanella sp. MR-7]
          Length = 1142

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 108/330 (32%), Gaps = 78/330 (23%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ F    +  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPFLQALSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND 107
            +DV   GS +            F +   R+ G     +  I ++ +  R       +N 
Sbjct: 61  MSDVIFNGSSARKPVSVAGVELVFENKEGRLAGQYASYE-EISVKRQVSRDGESWYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   R F   +       ERRR 
Sbjct: 120 QKCRRKDITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAGISRYKERRRE 179

Query: 144 LDRMVFAIDPRH-------------RRRMIDFERLMRGRNRLLTEGYFDSS------WCS 184
            +  +                      ++    +  +   R L +    +          
Sbjct: 180 TENRIRHTRENLERLGDIRSELAKQLEKLSQQAKAAKQ-YRELKQAERKTHAELLVMRYQ 238

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +++QMA L  +I+      +    +      Q       +L LT  L    +Q   A++
Sbjct: 239 ELQSQMASLSEQISS-----LELQQAAAQSLAQTGELESTELQLT--LSQLAEQEQQAVE 291

Query: 245 EEYA---------KKLFDGRKMDSMSRRTL 265
             Y          ++L   ++ D+     L
Sbjct: 292 AYYLTGTEIAKLEQQLQSQKQRDAQLHTQL 321



 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 32/175 (18%)

Query: 197  INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            +++ R ++I  L ++ +  +++      + S     D   +     L+E   K   + R 
Sbjct: 929  LDLIRQKII-RLGAINLAAIEEYEQQSERKSYLDHQDEDLNNGLATLEEAIRKIDKETRT 987

Query: 257  M----------DSMS--------RRTLIGPHRSDLIVDY--------CDKAITIAHGSTG 290
                       D            R  +     DL+             K  TI   S G
Sbjct: 988  RFKTTFDAVNEDLGRLFPKVFGGGRAYLALTEDDLLETGVTIMAQPPGKKNSTIHLLSGG 1047

Query: 291  EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
            E+ +  + +  A  RL       AP  +LDE+ A LD+       R++ ++   +
Sbjct: 1048 EKALTALSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVERFCRLLKEMSQSV 1097


>gi|77464456|ref|YP_353960.1| chromosome segregation protein SMC2 [Rhodobacter sphaeroides 2.4.1]
 gi|28375559|emb|CAD66603.1| SMC protein [Rhodobacter sphaeroides]
 gi|77388874|gb|ABA80059.1| Chromosome segregation protein SMC2 [Rhodobacter sphaeroides 2.4.1]
          Length = 1151

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 41/237 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R A 
Sbjct: 1   MRFTRLRLNGFKSFVDPTDLVIHEGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGAG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G+      +F      ++  + LA         I++  R  R +    + N  
Sbjct: 61  MEDVIFAGAATRPARNFAEVALVLDNADRLAPAGFNDADTIEIVRRITRDAGSAYKANTR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR-----MVFAIDPRH 155
            +R  D   L          P++ R      + +     RRR L+       ++      
Sbjct: 121 DVRARDIQMLFADASTGAHSPALVRQGQISELINAKPKARRRILEEAAGISGLYQRRHEA 180

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSS 210
             R+   E+ +                   +  Q++ L    K      E+   L  
Sbjct: 181 ELRLAATEQNL----------ARVEDVLDQLAQQLSTLARQAKQAARYREIGEELRR 227


>gi|328470643|gb|EGF41554.1| ATP-dependent endonuclease [Vibrio parahaemolyticus 10329]
          Length = 544

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++++ + IS FR    L L FD   T  +G+N  GK+++L+A+S   P  G
Sbjct: 1  MRLERIEISGFRGIKRLSLSFDE-LTTLIGENTWGKSSLLDALSIALPANG 50


>gi|258564324|ref|XP_002582907.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237908414|gb|EEP82815.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1261

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y      L+ DA  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLLGDAYFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|254468473|ref|ZP_05081879.1| chromosome segregation protein SMC [beta proteobacterium KB13]
 gi|207087283|gb|EDZ64566.1| chromosome segregation protein SMC [beta proteobacterium KB13]
          Length = 1161

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 65/214 (30%), Gaps = 36/214 (16%)

Query: 157  RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
            +  ID++   +     L     D    S I+ + A    +      + I  +  + M  V
Sbjct: 904  QTKIDYDYSAKE---FLKFNTNDDEVASEIDGESATSIGEKIEKLNQKIERIGPINMAAV 960

Query: 217  QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
             +      +++          Q+   L+E   K   + R          +  + +D    
Sbjct: 961  SELESERERVAYIASQVEDLSQASATLEEAIGKIDRETRDK-LKETYNSVNQNLNDYFRK 1019

Query: 277  YCD---------------------------KAITIAHGSTGEQKVVLVGIFLAHARLISN 309
                                          K  TI   S GE+ +  + +  A  RL   
Sbjct: 1020 LFGGGKAVLELLGNEILDTGLQIVAQPPGKKNTTIHLLSGGEKALTAIALVFALFRL--- 1076

Query: 310  TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
                AP  LLDE+ A LD+        +V ++ S
Sbjct: 1077 --NPAPFCLLDEVDAPLDDSNTERFCELVKEMSS 1108


>gi|148377701|ref|YP_001256577.1| ABC transporter ATP-binding protein [Mycoplasma agalactiae PG2]
 gi|148291747|emb|CAL59136.1| P115 Like (Mycoplasma hyorhinis) ABCtransporter ATP Binding Protein
           [Mycoplasma agalactiae PG2]
          Length = 995

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 14/124 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+  +    F+++A  + L F+      VG NG GK+NI +AI ++   R     R  +
Sbjct: 1   MKLIKVEAHGFKSFAEPITLHFNGGVAGIVGPNGSGKSNINDAIKWVLGERSAKELRGDN 60

Query: 61  YADVTRIGSPSF--------FSTFARVEGMEGLADISIKLETRDDR--SVRCLQINDVVI 110
             DV   GS +           TF   +G   +   +I +    +R   +    +N  V 
Sbjct: 61  MDDVIFAGSKTAKPMDKAVVTLTFDNKDGQSSINHETITISRVLERGSGINQYYLNGEVC 120

Query: 111 RVVD 114
           R  D
Sbjct: 121 RQKD 124


>gi|28900709|ref|NP_800364.1| hypothetical protein VPA0854 [Vibrio parahaemolyticus RIMD
          2210633]
 gi|260362604|ref|ZP_05775511.1| nucleoside triphosphate hydrolase domain protein [Vibrio
          parahaemolyticus K5030]
 gi|260877644|ref|ZP_05889999.1| nucleoside triphosphate hydrolase domain protein [Vibrio
          parahaemolyticus AN-5034]
 gi|28809089|dbj|BAC62197.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
          2210633]
 gi|308090660|gb|EFO40355.1| nucleoside triphosphate hydrolase domain protein [Vibrio
          parahaemolyticus AN-5034]
 gi|308112792|gb|EFO50332.1| nucleoside triphosphate hydrolase domain protein [Vibrio
          parahaemolyticus K5030]
          Length = 544

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++++ + IS FR    L L FD   T  +G+N  GK+++L+A+S   P  G
Sbjct: 1  MRLERIEISGFRGIKRLSLSFDE-LTTLIGENTWGKSSLLDALSIALPANG 50


>gi|71028802|ref|XP_764044.1| condensin subunit [Theileria parva strain Muguga]
 gi|68350998|gb|EAN31761.1| condensin subunit, putative [Theileria parva]
          Length = 1246

 Score = 49.5 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 43/126 (34%), Gaps = 18/126 (14%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + I+++ +  F++Y++  +    D       G NG GK+N+L+++ F   +S     R  
Sbjct: 1   MFIEYVILDGFKSYSTRTVIGPLDPHFNAVTGLNGSGKSNVLDSLCFVFGISDLSTVRAN 60

Query: 60  SYADVT-RIGSPSFFSTFARV------------EGMEGLADISIKLETRDDRSVRCLQIN 106
              ++  + G          +                 + +I+I  +       +    N
Sbjct: 61  KLDELIYKQGQAGITRATVTIIINNTVPMPTLMHPYRNMKEITITRQIALGGKNKYFINN 120

Query: 107 DVVIRV 112
                 
Sbjct: 121 HPATAK 126


>gi|289578298|ref|YP_003476925.1| DNA repair protein RecN [Thermoanaerobacter italicus Ab9]
 gi|289528011|gb|ADD02363.1| DNA repair protein RecN [Thermoanaerobacter italicus Ab9]
          Length = 566

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 68/206 (33%), Gaps = 24/206 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I          L F+    +  G+ G GK+ +++++  L  GRG       ++ R
Sbjct: 2   LLALSIQNVALIDKAELQFEEGFNVLTGETGAGKSIVIDSVLLLLGGRG-----SKEIIR 56

Query: 67  IGSPSFFSTFA--------------RVEGMEGLADISIKLETRDDRSVRCL-QIND--VV 109
            G                          G+E   D ++ +     +S R   +IN   V 
Sbjct: 57  TGEEKAIVEGVFFVDSNKDKIVEILEEVGLELEEDDTLIINREITKSGRSYCRINGRIVP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSME--RRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           +  + ++   L           +            F D    A+  + +  + ++ R+ +
Sbjct: 117 LSFLSKIGAFLVDILGQHEHQFLLDNTKHLFILDNFGDEEFKALREKFKELLKEYNRIQK 176

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
             +    +    +     ++ Q+ E+
Sbjct: 177 EISSFFKDEKEKNETIELLKYQIEEI 202


>gi|212212965|ref|YP_002303901.1| chromosome partition protein [Coxiella burnetii CbuG_Q212]
 gi|212011375|gb|ACJ18756.1| chromosome partition protein [Coxiella burnetii CbuG_Q212]
          Length = 1169

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + ++ F+++    L+         VG NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1   MYLKTIKLAGFKSFVDPTLIPIRGSMNAIVGPNGCGKSNVVDAVRWVIGETSAKQLRGQS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQIND 107
            +DV   G+ S            F ++  R+ G      +I+I+ E   D       IN 
Sbjct: 61  MSDVIFNGTTSRKPVGKASIELHFDNSEGRIGGEYAKYGEIAIRREVERDGQSNYF-ING 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 AHVRRRD 126


>gi|13471539|ref|NP_103105.1| DNA repair protein RecN [Mesorhizobium loti MAFF303099]
 gi|14022281|dbj|BAB48891.1| DNA repair protein; RecN [Mesorhizobium loti MAFF303099]
          Length = 557

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L + F    ++  G+ G GK+ +L+A+S     RG      A + R
Sbjct: 2  LSRLSIRDIVLIEKLDIDFQPGLSVLTGETGAGKSILLDALSLALGARG-----DASLVR 56

Query: 67 IGSPSFFSTFA 77
           G+        
Sbjct: 57 HGAAQGQVIAV 67


>gi|302679510|ref|XP_003029437.1| hypothetical protein SCHCODRAFT_78297 [Schizophyllum commune H4-8]
 gi|300103127|gb|EFI94534.1| hypothetical protein SCHCODRAFT_78297 [Schizophyllum commune H4-8]
          Length = 1127

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-- 64
           I  + +  F  Y  +         + +G NG GK++I  AI              ADV  
Sbjct: 37  IVRIKLHNFVTYDDVEFRPGPYLNMILGPNGTGKSSIACAICLGLNWPPTVLGRAADVPS 96

Query: 65  -TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             ++ + S F     ++G +G  ++ I+     +  V    +N  
Sbjct: 97  FVKMDADSGF-IEIELKGSKGEDNVVIRRVIHRNSRVTTFTLNGK 140


>gi|298490107|ref|YP_003720284.1| exonuclease SbcC ['Nostoc azollae' 0708]
 gi|298232025|gb|ADI63161.1| exonuclease SbcC ['Nostoc azollae' 0708]
          Length = 1007

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 9  FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L +  F +Y    L F   HT    G NG GK+++LEAI++   G+  R     DV   
Sbjct: 5  QLILKNFLSYRDATLDFGGLHTACICGSNGAGKSSLLEAITWSIWGQS-RATVEDDVIYS 63

Query: 68 GSPSFFSTFARVEGMEGLADISIK 91
          G+      F      +    I  +
Sbjct: 64 GAKEVRVDFTFYNNQQTYRVIRTR 87


>gi|116618693|ref|YP_819064.1| DNA repair ATPase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116097540|gb|ABJ62691.1| DNA replication and repair protein RecN [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 555

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 20/129 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  F     + L F+   ++  G+ G GK+ I++A+  L+ GR     + +++ R
Sbjct: 2   LENLIIENFAIIEKVDLQFEEGMSVLTGETGAGKSIIIDALFMLTGGR-----ANSEMVR 56

Query: 67  IGSPSFF-------------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            GS                        G+ G  +  I     +      ++IN V++  +
Sbjct: 57  HGSKKAVLQAVFSVPDNQKLRDLIARSGVAGDDNELIIYRELNQNGRSIIRINGVLVNLK 116

Query: 112 VVDELNKHL 120
            +  + ++L
Sbjct: 117 TLAAIGRYL 125


>gi|10956128|ref|NP_037556.1| hypothetical protein pMD136_p01 [Pediococcus pentosaceus]
 gi|5091686|gb|AAD39633.1|AF033858_16 unknown [Pediococcus pentosaceus]
          Length = 607

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +  + I  FR Y + ++  D Q T  +G N VGK+ I++A+   
Sbjct: 1  MHLVSVTIHNFRGYKNTKINIDDQLTTLIGKNDVGKSTIVDALEIF 46


>gi|312871883|ref|ZP_07731967.1| DNA repair protein RecN [Lactobacillus iners LEAF 3008A-a]
 gi|312872491|ref|ZP_07732560.1| DNA repair protein RecN [Lactobacillus iners LEAF 2062A-h1]
 gi|311092073|gb|EFQ50448.1| DNA repair protein RecN [Lactobacillus iners LEAF 2062A-h1]
 gi|311092605|gb|EFQ50965.1| DNA repair protein RecN [Lactobacillus iners LEAF 3008A-a]
          Length = 559

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 80/210 (38%), Gaps = 33/210 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F    T+ +G+ G GK+ I++A+S L   R     +  D+ R
Sbjct: 2   LVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSR-----AQIDMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F+  +  + L D+ I+     D            +    ++IN     I
Sbjct: 57  SGESKAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL----- 165
            V+  L+++L        M  +           ++ +    +   +  +  ++++     
Sbjct: 117 NVLKNLSQYLVDIHGQRDMQILMDQDL-----HINLLDNYANNDFKESLCQYQKIYAKWQ 171

Query: 166 -MRGRNRLLTEGYFDSSWC-SSIEAQMAEL 193
            ++ R   + +   + +     +E Q+ EL
Sbjct: 172 EIKQRLSAIRKNAQEIAQKHDILEYQLNEL 201


>gi|299743960|ref|XP_002910729.1| hypothetical protein CC1G_15063 [Coprinopsis cinerea
          okayama7#130]
 gi|298405899|gb|EFI27235.1| hypothetical protein CC1G_15063 [Coprinopsis cinerea
          okayama7#130]
          Length = 1182

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK L I  F++Y        F  +H + VG NG GK+N   AI F
Sbjct: 1  MYIKTLTIQGFKSYRDQTQIEPFSPKHNVVVGRNGSGKSNFFAAIRF 47



 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 110/302 (36%), Gaps = 29/302 (9%)

Query: 84   GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMER-RR 142
              A+ S  +  +   + R L    ++    DE N+++R   ++P     F+  S ER  R
Sbjct: 881  QQAEDSRSMSKQQKTTERYLAKRQMLSTRKDECNRNIRDLGVLPE--EAFTKYSNERVER 938

Query: 143  FL------DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
             +      +  +      +++    +    + R++LL       +   SIE  +  L  +
Sbjct: 939  LVKKLHTVNEGLKKFAHVNKKAFEQYSNFTKQRDQLLKRREELDTSAESIEELVQVLDQR 998

Query: 197  INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             + A       ++    E      F  +  +  G L  +         +E  +       
Sbjct: 999  KDEAIERTFKQVAKNFEEV-----FEKLVPAGRGRLIIQRRVDQDVDMDEDEEDETQQSA 1053

Query: 257  MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
            +D+ +  ++     S +     D+ + I   S G++ +V +    A           AP 
Sbjct: 1054 IDNYTGISIKVSFNSKV-----DEGLRIQQLSGGQKSLVALATVFA-----IQKCDPAPF 1103

Query: 317  LLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDKSVFDSLNETAKFMRI--SNHQAL 373
             L DEI A+LD   R A+  ++  + S   F+T T     + L    KF  +  +N +  
Sbjct: 1104 YLFDEIDANLDAQYRTAVASMIQSLSSTAQFITTT--FRPEMLVTADKFYGVLFNNQKVS 1161

Query: 374  CI 375
             I
Sbjct: 1162 SI 1163


>gi|325680938|ref|ZP_08160475.1| putative DNA sulfur modification protein DndD [Ruminococcus albus
          8]
 gi|324107402|gb|EGC01681.1| putative DNA sulfur modification protein DndD [Ruminococcus albus
          8]
          Length = 676

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFD----AQHTIFVGDNGVGKTNILEAISFLSPGRG---- 55
          +  K + +  FR +     + F        TI +GDNG GKT+  +A ++   GR     
Sbjct: 1  MYFKQITLQNFRQFKEKTTVTFSTDHVKNVTIIMGDNGTGKTSFAQAFTWCLYGRTDFKD 60

Query: 56 ---FRRASYADVTRIGSPSFFSTFARVEG 81
             F ++  A++T   +   F     V G
Sbjct: 61 QDIFSKSKKAEMTNTDTAETFVELVFVHG 89


>gi|253572227|ref|ZP_04849630.1| DNA repair protein recN [Bacteroides sp. 1_1_6]
 gi|251838002|gb|EES66090.1| DNA repair protein recN [Bacteroides sp. 1_1_6]
          Length = 555

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 18/202 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  RR +  
Sbjct: 2   LRSLYIQNYALIEKLDIGFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRRGASK 61

Query: 63  DVT--RIGSPSFFST--FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDEL 116
            +   R    ++     F   E      +  ++ E +     R   IND       V EL
Sbjct: 62  CIIEARFDISAYGMRPFFEENELEYDDEECILRREVQASGKSRAF-INDTPASLAQVKEL 120

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRGRNR 171
            + L           +       +   LD +    D               +R +     
Sbjct: 121 GEQLIDV--HSQHQNLLLNKEGFQLNVLDILAHNDDALEKYHSLYNEWRQLDRELSELTA 178

Query: 172 LLTEGYFDSSWCSSIEAQMAEL 193
           L  +   D  +      Q+ E 
Sbjct: 179 LAEQSRTDEDYLRFQLEQLEEA 200


>gi|221057175|ref|XP_002259725.1| chromosome condensation protein [Plasmodium knowlesi strain H]
 gi|193809797|emb|CAQ40501.1| chromosome condensation protein, putative [Plasmodium knowlesi
           strain H]
          Length = 1485

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
           +R+ I  L +  F++Y+ +++   F  + +  VG NG GK+NI++A+ F+     +  R+
Sbjct: 65  SRLIIDRLILENFKSYSGVKVIGPFYKKFSCIVGPNGSGKSNIIDAMLFVFGRRAKKIRQ 124

Query: 59  ASYADVTR 66
               D+  
Sbjct: 125 NKLCDLIH 132


>gi|190345844|gb|EDK37800.2| hypothetical protein PGUG_01898 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1058

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 3/121 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRASYADV 64
           I  + ++ F  Y++          + +G NG GK+ ++ AI     G+    RR +   +
Sbjct: 15  IVSVRVTNFTTYSNAEFQLSPTLNMIIGPNGTGKSTLVAAICLGLGGKIELIRRKTLKSM 74

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-VIRVVDELNKHLRIS 123
            + G              +   +  +   T        L  N V   R V  + + L I 
Sbjct: 75  IKTGCSESTIEITLKNAEDANPEYLVIERTFTATESNWLVNNRVSDERTVRNVCRKLNIQ 134

Query: 124 W 124
            
Sbjct: 135 L 135


>gi|150016584|ref|YP_001308838.1| DNA repair protein RecN [Clostridium beijerinckii NCIMB 8052]
 gi|149903049|gb|ABR33882.1| DNA repair protein RecN [Clostridium beijerinckii NCIMB 8052]
          Length = 562

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 84/254 (33%), Gaps = 37/254 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI  F     + + F     I  G+ G GK+ +++AI F+  G+ F      ++ R
Sbjct: 2   LIQLNIKNFALIEDMTINFSEGFNILSGETGAGKSIMIDAIDFVLGGK-F----SKNLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G      T+         + +S  LE  D      L I+         L K    S + 
Sbjct: 57  TGED---RTYVEALFSLEKSKVSEVLEELDIEYEDVLIISRESHASGKNLIKVNGKSLIT 113

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
             + +I       R + LD      +             +  RN  +       S+    
Sbjct: 114 SQLRKI-------RAKLLDIHGQHANQE-----------LLQRNTHI-------SYLDGF 148

Query: 187 --EAQMAELG--VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             +  +  +G    +    +++I  ++ +     +++   ++K  +      K  +    
Sbjct: 149 IGDEIIHPIGRFSNLRADLIKIIEEINRICGNQDREKLLDYLKFQIEDIEKAKLKKDEEE 208

Query: 243 LKEEYAKKLFDGRK 256
             +E    L +  K
Sbjct: 209 TLKEEYNILANAEK 222


>gi|332981393|ref|YP_004462834.1| SMC domain-containing protein [Mahella australiensis 50-1 BON]
 gi|332699071|gb|AEE96012.1| SMC domain protein [Mahella australiensis 50-1 BON]
          Length = 484

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          I+ + +  F+++    L       IFVG +  GKT I+ AI
Sbjct: 7  IEKILLENFQSHEHTELDLTPGLNIFVGPSDSGKTAIIRAI 47


>gi|309808804|ref|ZP_07702689.1| DNA repair protein RecN [Lactobacillus iners LactinV 01V1-a]
 gi|325913510|ref|ZP_08175876.1| DNA repair protein RecN [Lactobacillus iners UPII 60-B]
 gi|308167930|gb|EFO70063.1| DNA repair protein RecN [Lactobacillus iners LactinV 01V1-a]
 gi|325477279|gb|EGC80425.1| DNA repair protein RecN [Lactobacillus iners UPII 60-B]
          Length = 559

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 80/210 (38%), Gaps = 33/210 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F    T+ +G+ G GK+ I++A+S L   R     +  D+ R
Sbjct: 2   LVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSR-----AQIDMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F+  +  + L D+ I+     D            +    ++IN     I
Sbjct: 57  SGESKAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL----- 165
            V+  L+++L        M  +           ++ +    +   +  +  ++++     
Sbjct: 117 NVLKNLSQYLVDIHGQRDMQILMDQDL-----HINLLDNYANNDFKESLCQYQKIYAKWQ 171

Query: 166 -MRGRNRLLTEGYFDSSWC-SSIEAQMAEL 193
            ++ R   + +   + +     +E Q+ EL
Sbjct: 172 EIKQRLSAIRKNAQEIAQKHDILEYQLNEL 201


>gi|289613822|emb|CBI59305.1| putative SMC6 protein [Sordaria macrospora]
          Length = 1199

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 4/85 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +  L           VG+NG GK+ IL AI+    G+     R  S   
Sbjct: 123 LQSITCINFMCHTRLHCELGPLLNFIVGENGSGKSAILTAITLCLGGKASSTNRGGSLKS 182

Query: 64  VTRIG-SPSFFSTFARVEGMEGLAD 87
             + G   S      + EG +    
Sbjct: 183 FVKEGTEKSVLIVKIKNEGQDAYRH 207


>gi|330013057|ref|ZP_08307561.1| DNA repair protein RecN [Klebsiella sp. MS 92-3]
 gi|328533605|gb|EGF60320.1| DNA repair protein RecN [Klebsiella sp. MS 92-3]
          Length = 553

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 31/207 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E   +  ++     D   R   IN   V + 
Sbjct: 57  RGATRADLCARFALKDTPAAQRWLEENQLESGRECLLRRVISADGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +   +       ++  LD       +      H R+     R +
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLTK--PEHQKTLLDGYTGEYALTQRMAEHYRQWHQSCREL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               +   E    +        Q+ EL
Sbjct: 174 AQHQQQSQERAARADLLQY---QLKEL 197


>gi|325911839|ref|ZP_08174243.1| DNA repair protein RecN [Lactobacillus iners UPII 143-D]
 gi|325476345|gb|EGC79507.1| DNA repair protein RecN [Lactobacillus iners UPII 143-D]
          Length = 559

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 80/210 (38%), Gaps = 33/210 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F    T+ +G+ G GK+ I++A+S L   R     +  D+ R
Sbjct: 2   LVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSR-----AQIDMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F+  +  + L D+ I+     D            +    ++IN     I
Sbjct: 57  SGESKAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL----- 165
            V+  L+++L        M  +           ++ +    +   +  +  ++++     
Sbjct: 117 NVLKNLSQYLVDIHGQRDMQILMDQDL-----HINLLDNYANNDFKESLCQYQKIYAKWQ 171

Query: 166 -MRGRNRLLTEGYFDSSWC-SSIEAQMAEL 193
            ++ R   + +   + +     +E Q+ EL
Sbjct: 172 EIKQRLSAIRKNAQEIAQKHDILEYQLNEL 201


>gi|319782857|ref|YP_004142333.1| DNA repair protein RecN [Mesorhizobium ciceri biovar biserrulae
          WSM1271]
 gi|317168745|gb|ADV12283.1| DNA repair protein RecN [Mesorhizobium ciceri biovar biserrulae
          WSM1271]
          Length = 557

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L + F    ++  G+ G GK+ +L+A+S     RG      A + R
Sbjct: 2  LSRLSIRDIVLIEKLDIDFQPGLSVLTGETGAGKSILLDALSLALGARG-----DASLVR 56

Query: 67 IGSPSFFSTFA 77
           G+        
Sbjct: 57 HGAAQGQVIAV 67


>gi|307173964|gb|EFN64694.1| Structural maintenance of chromosomes protein 2 [Camponotus
           floridanus]
          Length = 1177

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 109/304 (35%), Gaps = 51/304 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           + IK + +  F++Y   + +  FD +     G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MYIKSMILEGFKSYGKRIEINNFDKEFNAITGFNGTGKSNILDAICFVLGITNLGQVRAT 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           S  D+  + G          +            G E   +I I  +       +   +N 
Sbjct: 61  SLQDLVYKSGQAGVKKASVTIIFDNHDRESSPMGYEHHDEIIITRQVIIGGKNK-YMLNG 119

Query: 108 VVI--RVVDELNKHLRISWLVP------------------SMDRIFSGLSMER--RRFLD 145
             +  + V +L   ++++   P                   +  +    +  R   +   
Sbjct: 120 SNVPNKRVQDLFCSVQLNVNNPHFLIMQGRITKVLNMKPVEILSMLEEAAGTRMYEKKKQ 179

Query: 146 RMVFAIDPRHRRRMIDFERLMRG----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
             +  I+ +   ++ +   +++     R   L E          IE ++ E   +I +A 
Sbjct: 180 ASLITIEKK-DSKLKEINDILKEEIGPRLNKLKEERTQYVEFQRIEREL-EHCKRIYLAW 237

Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
            + + ALS+   +  +       K++L        ++    ++E+YA+ L    K ++  
Sbjct: 238 -KYVAALSNS-EKTEENVKTVQNKINLKLEDIAAGEKEIKDIEEKYAELLK---KKEAEK 292

Query: 262 RRTL 265
             TL
Sbjct: 293 GGTL 296


>gi|294678934|ref|YP_003579549.1| chromosome partition protein Smc [Rhodobacter capsulatus SB 1003]
 gi|294477754|gb|ADE87142.1| chromosome partition protein Smc [Rhodobacter capsulatus SB 1003]
          Length = 1152

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 43/220 (19%), Positives = 77/220 (35%), Gaps = 29/220 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFTRLRLNGFKSFVDPTDLVIHDGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGEG 60

Query: 61  YADVT-----RIGSPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV        G+  F      ++  E LA         +++  R  R +    ++N  
Sbjct: 61  MEDVIFAGAATRGARHFAEVSLSIDNSERLAPSGFNDSDVLEIVRRITRDAGSAYKVNTK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKARRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
             E  ++           D      +  Q+A L  ++  A
Sbjct: 177 RHEAELKLSGAEQNLARVDDV-LEQLGTQLASLSRQVRQA 215


>gi|227432101|ref|ZP_03914113.1| DNA repair protein RecN [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227352128|gb|EEJ42342.1| DNA repair protein RecN [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 559

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 20/129 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  F     + L F+   ++  G+ G GK+ I++A+  L+ GR     + +++ R
Sbjct: 6   LENLIIENFAIIEKVDLQFEEGMSVLTGETGAGKSIIIDALFMLTGGR-----ANSEMVR 60

Query: 67  IGSPSFF-------------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            GS                        G+ G  +  I     +      ++IN V++  +
Sbjct: 61  HGSKKAVLQAVFSVPDNQKLRDLIARSGVAGDDNELIIYRELNQNGRSIIRINGVLVNLK 120

Query: 112 VVDELNKHL 120
            +  + ++L
Sbjct: 121 TLAAIGRYL 129


>gi|146420544|ref|XP_001486227.1| hypothetical protein PGUG_01898 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 1058

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 3/121 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRASYADV 64
           I  + ++ F  Y++          + +G NG GK+ ++ AI     G+    RR +   +
Sbjct: 15  IVSVRVTNFTTYSNAEFQLSPTLNMIIGPNGTGKSTLVAAICLGLGGKIELIRRKTLKSM 74

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-VIRVVDELNKHLRIS 123
            + G              +   +  +   T     +  L  N V   R V  + + L I 
Sbjct: 75  IKTGCSESTIEITLKNAEDANPEYLVIERTFTATELNWLVNNRVSDERTVRNVCRKLNIQ 134

Query: 124 W 124
            
Sbjct: 135 L 135


>gi|90412629|ref|ZP_01220631.1| hypothetical ATP-dependent endonuclease of the OLD family protein
          [Photobacterium profundum 3TCK]
 gi|90326437|gb|EAS42849.1| hypothetical ATP-dependent endonuclease of the OLD family protein
          [Photobacterium profundum 3TCK]
          Length = 548

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + ++ + +S FR    L L F+ Q ++ +G+N  GK+++L+A+S 
Sbjct: 1  MHLERIEVSGFRGIKRLSLSFN-QLSVLIGENAWGKSSLLDALSI 44


>gi|120554092|ref|YP_958443.1| chromosome segregation protein SMC [Marinobacter aquaeolei VT8]
 gi|120323941|gb|ABM18256.1| condensin subunit Smc [Marinobacter aquaeolei VT8]
          Length = 1163

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +  T  VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVPFPSNMTAVVGPNGCGKSNIIDAVRWVMGESSAKYLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGLADI------SIKLETRDDRSVRC-LQINDV 108
             DV   GS +       S     +  +G A         I ++ R  R  +    +N  
Sbjct: 61  MTDVIFNGSSARKPVGQASIELVFDNSDGSAPGEFVKFNEISVKRRVSREGQSEYFLNGS 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 KCRRRD 126



 Score = 36.4 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 82/262 (31%), Gaps = 46/262 (17%)

Query: 152  DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-----NIARVEMIN 206
            + + +      E+L      L             ++ ++ E+  ++          E + 
Sbjct: 892  EHQVQEIRARLEKLKMESQALEIRSGNHIEQLKELDVKLQEVLEQLPEDAEEKVWAEELE 951

Query: 207  ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT-- 264
             + + I            +  +        D+    L E         RK+D  +R+   
Sbjct: 952  KIGNRIQRLGAINLAAIEEYQVQSERKTYLDEQHNDLMEALETLDNAIRKIDRETRQRFK 1011

Query: 265  ----------------LIGPHRSDLIVDYCD---------------KAITIAHGSTGEQK 293
                            + G   + L +   D               K  TI   S GE+ 
Sbjct: 1012 ETFDQVNGGLQALFPKVFGGGNAYLELTGEDLLETGVAIMARPPGKKNSTIHLLSGGEKA 1071

Query: 294  VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDK 352
            +  + +  +  +L       AP  +LDE+ A LD+        +V ++  Q+ F+  T  
Sbjct: 1072 LTAIALVFSIFQL-----NPAPFCMLDEVDAPLDDANVGRYANMVKEMSKQVQFIYITHN 1126

Query: 353  SVFDSLNETAKFMRISNHQALC 374
             +   + +  + M ++ H+  C
Sbjct: 1127 KIAMEMAD--QLMGVTMHEPGC 1146


>gi|107021819|ref|YP_620146.1| DNA repair protein RecN [Burkholderia cenocepacia AU 1054]
 gi|116688766|ref|YP_834389.1| DNA repair protein RecN [Burkholderia cenocepacia HI2424]
 gi|254246261|ref|ZP_04939582.1| ATPase [Burkholderia cenocepacia PC184]
 gi|105892008|gb|ABF75173.1| DNA replication and repair protein RecN [Burkholderia cenocepacia
           AU 1054]
 gi|116646855|gb|ABK07496.1| DNA replication and repair protein RecN [Burkholderia cenocepacia
           HI2424]
 gi|124871037|gb|EAY62753.1| ATPase [Burkholderia cenocepacia PC184]
          Length = 549

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 91/259 (35%), Gaps = 30/259 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  ++F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFSVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++     A+ S+ L    D + R    IN     +  + 
Sbjct: 57  TGCGRADITAEFTPHDRVARWLDEHAFDAEDSVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 ELGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAD--AANVARAWRVWRDATQAID 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+  + +  H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQAGEW-DEVSNEHKRLSHSANLIE 223

Query: 235 KFDQSFCALKEEYAKKLFD 253
               +  AL E     L  
Sbjct: 224 GVRGALNALSESDDAMLAQ 242


>gi|126331355|ref|XP_001372430.1| PREDICTED: similar to chromosome-associated polypeptide-C
           [Monodelphis domestica]
          Length = 1415

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
           T R+ I  +    F++YA   +L  F    +  +G NG GK+N+++++ F+   R    R
Sbjct: 206 TPRLMISHIVNLNFKSYAGRTQLGPFHKHFSCIIGPNGSGKSNVIDSMLFVFGCRAHKIR 265

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 266 SKKLSVLIHHSDDYQDLDSCTVEVHFQKI 294


>gi|123441344|ref|YP_001005331.1| recombination and repair protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088305|emb|CAL11096.1| DNA repair protein RecN [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 559

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 87/278 (31%), Gaps = 36/278 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 8   LTQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAIDALGLCLGSRS-----DGSMVR 62

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
           +G+                   +     ++   +  ++     D   R   IN   V + 
Sbjct: 63  LGATRADICARFSLADTPSARQWLEDNHLDDSNECLLRRAIGSDGRSRGF-INGTAVPLS 121

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRM 159
            + EL +HL       +   +       +++ LD            +  + I  +  R +
Sbjct: 122 QLRELGQHLIQIHGQHAHQLLLR--PDHQKQLLDAYANQSVLLTEMKAAYQIWHQSCRAL 179

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQK 218
              ++    RN       +     +S   Q  E   + I   R+     L SL  + +Q 
Sbjct: 180 ALHQQQSLERNARHELLQYQLKELNSFAPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQL 239

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            +       L+     K+  +  A  +E    L +  +
Sbjct: 240 LSDDEQNNILSQLYSAKYQLTELAGMDEQFNNLLNMLE 277


>gi|78044702|ref|YP_359793.1| hypothetical protein CHY_0946 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996817|gb|ABB15716.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 479

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ L +  F+++      F     + VG++  GKT ++ A+ +L           ++ 
Sbjct: 1   MYLEKLILVNFQSHKYSEFNFAPGLNVIVGESDRGKTAVIRALRWLFYNE----PKGSEF 56

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
            R+G      T          ++  I    R DR  R + I
Sbjct: 57  IRVGEREARVTA-------HFSNGLIVSRERSDRKNRYVLI 90


>gi|50287267|ref|XP_446063.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525370|emb|CAG58987.1| unnamed protein product [Candida glabrata]
          Length = 1223

 Score = 49.5 bits (117), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 89/282 (31%), Gaps = 39/282 (13%)

Query: 6   KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFL-------SPGRGF 56
           ++  L +  F++Y  ++ + F D+  T  +G NG GK+N+++AISF+             
Sbjct: 3   RLVGLELYNFKSYKGTVNVDFGDSNFTSIIGPNGSGKSNLMDAISFVLGIRSSSLRSSAL 62

Query: 57  RRASYADVTRIGS-------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
           +   Y D+    +              ++   F   +G        ++L +R   +   L
Sbjct: 63  KDLIYRDIISRENTPTGADNDENGNRTAYVKAFYEYDGKVVEL---MRLISRLGDTSYKL 119

Query: 104 QINDVVIRVVDE-------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPR 154
             N V  +   +       L K          +++I S   +   + ++           
Sbjct: 120 DGNTVTYKEYSQFLESQNILIKAKNFLVFQGDVEQIASQSPLGLTKLIEEVSGSMQYKKE 179

Query: 155 HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
           +      ++++ +     + +     +   + +  M+      +    + +     +   
Sbjct: 180 YEELKDQYDKICQASTESIKKRRRIHAELKTYKEGMSR-----DEEYRKYVQKKKRVQTN 234

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
               + +             +  Q+   +  E  +      +
Sbjct: 235 LSLWQLYHMEDERYQCLQKLEESQNDVDVIREKLEAEEKNLE 276


>gi|332982818|ref|YP_004464259.1| AAA ATPase [Mahella australiensis 50-1 BON]
 gi|332700496|gb|AEE97437.1| AAA ATPase [Mahella australiensis 50-1 BON]
          Length = 539

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAI 47
          ++++ + I  +R+   + L     +  +  G N  GK+NIL AI
Sbjct: 1  MRLEAILIKHYRSIERVALKLPQNKPLVLFGPNNAGKSNILSAI 44



 Score = 39.5 bits (91), Expect = 0.85,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQI 345
           TGEQ+V+L+    A+  +    TG   +L+++E  AHL    +  L   V D+   G Q+
Sbjct: 245 TGEQQVLLMAFVKAYMEVF---TGENFVLIIEEPEAHLHPLAQRWLKEYVVDMCSSGIQV 301

Query: 346 FMTG-----TDKSVFDSL 358
            ++       D    D L
Sbjct: 302 IISTHSSEFIDAEYLDGL 319


>gi|296804972|ref|XP_002843313.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238845915|gb|EEQ35577.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 1146

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++    G+     R  S   
Sbjct: 96  IERVDCYNFMCHEHFSVELGPLINFIVGKNGSGKSAILTALTLCLGGKASATNRGQSLKS 155

Query: 64  VTRIGSPSFFSTFARVEGM 82
             + G  S  +   R++  
Sbjct: 156 FVKEGKESA-TIIVRIKNQ 173


>gi|213408381|ref|XP_002174961.1| conserved hypothetical protein [Schizosaccharomyces japonicus
          yFS275]
 gi|212003008|gb|EEB08668.1| conserved hypothetical protein [Schizosaccharomyces japonicus
          yFS275]
          Length = 1173

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRA 59
          +KI+ L I  F++YA   +   +D+Q     G NG GK+NIL+AI F L        R  
Sbjct: 1  MKIEELIIDGFKSYAVRTVISGWDSQFNAITGLNGSGKSNILDAICFVLGITNMHTVRAQ 60

Query: 60 SYADVT-RIGSPSFFSTFARV 79
          +  D+  + G          +
Sbjct: 61 NLQDLIYKRGQAGITRASVTI 81


>gi|118444709|ref|YP_878060.1| DNA repair protein RecN [Clostridium novyi NT]
 gi|118135165|gb|ABK62209.1| DNA repair protein RecN [Clostridium novyi NT]
          Length = 564

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 60/173 (34%), Gaps = 17/173 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI  F    SL + F+    +  G+ G GK+ +++AI+++  G  F       + R
Sbjct: 2   LLQLNIKNFALIESLTINFEKGFNVLTGETGAGKSILIDAINYV-LGEKF----NKGLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDD----------RSVR-CLQINDVVIRVVDE 115
            G    F             ++   LE   D          +S +  +++N   I + D 
Sbjct: 57  TGENRTFVEAIFDMENTNTLEMLKSLEMPSDELLIVSRETFKSGKSIVKVNGKSILISDI 116

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR-RRMIDFERLMR 167
                 +  +             +   +LD     +          ++++L++
Sbjct: 117 KKISSTLINIHGQHQNQELLNPSKHINYLDEFGEELLKSFLIEYKENYKKLLQ 169


>gi|71281456|ref|YP_269133.1| hypothetical protein CPS_2417 [Colwellia psychrerythraea 34H]
 gi|71147196|gb|AAZ27669.1| conserved hypothetical protein [Colwellia psychrerythraea 34H]
          Length = 748

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTN 42
          +KI F++I  FR   S R+    + T+ VG N  GKT+
Sbjct: 1  MKISFIDIQNFRKLQSCRINLSDKETLLVGANNSGKTS 38


>gi|320528386|ref|ZP_08029548.1| segregation protein SMC [Solobacterium moorei F0204]
 gi|320131300|gb|EFW23868.1| segregation protein SMC [Solobacterium moorei F0204]
          Length = 981

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 51/286 (17%)

Query: 5   IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + +  F+++A   +  FD   T  VG NG GK+NI +++   L     +  R   
Sbjct: 1   MFLKRIEMQGFKSFADRTIIQFDHPITGIVGPNGCGKSNIADSVRWVLGEQSAKSMRGDK 60

Query: 61  YADVTRIGSPSFFST-FARVEGM---------EGLADISIKLETRDDRSVRCLQINDVVI 110
             DV   GS        A V  +         +   +I +      D       IN   +
Sbjct: 61  MNDVIFAGSADRRRVNMAEVTLVFDNTNHILNDDKDEIEVTRRLFRDSGEAEYLINRKNV 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMID 161
           R+ D ++  L    L      I S            +ERR   +             +  
Sbjct: 121 RLKDVVDLFLDT-GLGKDSLSIISQGNVLSFAEAKPLERRGIFEE---------AAGVAK 170

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN-IARVEMINALSSLIMEYVQKEN 220
           ++   + +   L++     +        + EL  +++ + R       + +  E  Q+  
Sbjct: 171 YK---KRKLESLSKLERTKANLDRSNDILIELEKQVSPLKRQA---RKAEIYREKKQR-- 222

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
              I++S+      +  +S  A  E   K LF     D  ++ T+ 
Sbjct: 223 LEEIEISVL----VQDIESIHADIESAKKALF-----DIETKTTMF 259


>gi|262196886|ref|YP_003268095.1| chromosome segregation protein SMC [Haliangium ochraceum DSM
          14365]
 gi|262080233|gb|ACY16202.1| chromosome segregation protein SMC [Haliangium ochraceum DSM
          14365]
          Length = 1403

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          ++IK + I  F+++     L   +  T  VG NG GK+NI++AI +    +     R  +
Sbjct: 1  MRIKRIEIIGFKSFCDRTVLNISSPVTSVVGPNGCGKSNIVDAIRWSMGEQSARHLRGKA 60

Query: 61 YADVTRIGSPS 71
            DV   GS S
Sbjct: 61 MDDVIFAGSES 71


>gi|242214587|ref|XP_002473115.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727776|gb|EED81685.1| predicted protein [Postia placenta Mad-698-R]
          Length = 275

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK L I  F++Y        F  +H + VG NG GK+N   AI F
Sbjct: 1  MYIKTLTIQGFKSYRDQTQIEPFSPRHNVVVGRNGSGKSNFFAAIRF 47


>gi|151945597|gb|EDN63838.1| structural maintenance of chromosomes [Saccharomyces cerevisiae
           YJM789]
          Length = 1093

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 6/120 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + + +F  Y            + +G NG GK+  + A+     G+     R     D
Sbjct: 42  IIKIRLQDFVTYTLTEFNLSPSLNMIIGPNGSGKSTFVCAVCLGLAGKPEYIGRSKKVED 101

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             + G      +   +          I+     D +++  +I     R  D L    ++S
Sbjct: 102 FIKNGQD---VSKIEITLKNSPNVTDIEYIDARDETIKITRIITRSKRRSDYLINDYQVS 158


>gi|325293454|ref|YP_004279318.1| DNA repair protein recN [Agrobacterium sp. H13-3]
 gi|325061307|gb|ADY64998.1| DNA repair protein recN [Agrobacterium sp. H13-3]
          Length = 557

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 69/203 (33%), Gaps = 26/203 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F+A  ++  G+ G GK+ +L+++S    GRG        + R
Sbjct: 2   LVQLSIRDIVLIERLDLGFEAGLSVLTGETGAGKSILLDSLSLALGGRG-----DGGLVR 56

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRV 112
            G      T               R  G++   D+  +     D   +    +  + +++
Sbjct: 57  HGEDKGQVTATFEVPNSHPTRHLLRENGLDDDGDLIFRRVQSADGRTKAYINDQAISVQM 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           + +L + L           +    +   R  LD      +         R   D ER ++
Sbjct: 117 MRQLGQLLVEIHGQHDDRALV--DTDAHRTLLDAFAGLSEDARAVQGFYRTWKDAERALK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQM 190
                +     ++ +  S   ++
Sbjct: 175 THRAKVEAAAREADYLRSSVEEL 197


>gi|320546354|ref|ZP_08040671.1| DNA repair protein RecN [Streptococcus equinus ATCC 9812]
 gi|320449008|gb|EFW89734.1| DNA repair protein RecN [Streptococcus equinus ATCC 9812]
          Length = 552

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 70/207 (33%), Gaps = 23/207 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLTFENGMTVLTGETGAGKSIIIDAMNLMLGAR-----ASLDVIR 56

Query: 67  I-------------GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
                         G  +  +      G++   ++ I+ E          +IN  ++   
Sbjct: 57  HGAKKAEIEGLFSVGENAALTHILEENGIDISDELIIRREI-LQNGRSISRINGQMVNLT 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            +  + ++L         + +       R    F D    A+   +R     +  L +  
Sbjct: 116 TLRAVGQYLVDIHGQHDQEELMKPNMHIRMLDEFGDEHFSAVKKHYREIFESYRTLRKRV 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVK 196
                      +    +E Q+AE+   
Sbjct: 176 LTKQKNEQEHKARIEMLEFQIAEIEAA 202


>gi|256273929|gb|EEU08848.1| Smc5p [Saccharomyces cerevisiae JAY291]
          Length = 1093

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 6/120 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + + +F  Y            + +G NG GK+  + A+     G+     R     D
Sbjct: 42  IIKIRLQDFVTYTLTEFNLSPSLNMIIGPNGSGKSTFVCAVCLGLAGKPEYIGRSKKVED 101

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             + G      +   +          I+     D +++  +I     R  D L    ++S
Sbjct: 102 FIKNGQD---VSKIEITLKNSPNVTDIEYIDARDETIKITRIITRSKRRSDYLINDYQVS 158


>gi|207341356|gb|EDZ69438.1| YOL034Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259149451|emb|CAY86255.1| Smc5p [Saccharomyces cerevisiae EC1118]
          Length = 1093

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 6/120 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + + +F  Y            + +G NG GK+  + A+     G+     R     D
Sbjct: 42  IIKIRLQDFVTYTLTEFNLSPSLNMIIGPNGSGKSTFVCAVCLGLAGKPEYIGRSKKVED 101

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             + G      +   +          I+     D +++  +I     R  D L    ++S
Sbjct: 102 FIKNGQD---VSKIEITLKNSPNVTDIEYIDARDETIKITRIITRSKRRSDYLINDYQVS 158


>gi|193591985|ref|XP_001948129.1| PREDICTED: structural maintenance of chromosomes protein 1A-like
          [Acyrthosiphon pisum]
          Length = 1239

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63
          +K + +  F++Y     +      T  +G NG GK+N ++AISF+   +    R    +D
Sbjct: 5  LKCIEMDNFKSYRGHHMIGPLKNFTAVIGPNGSGKSNFMDAISFVMGEKTTSLRVKRLSD 64

Query: 64 VTR 66
          +  
Sbjct: 65 LIH 67


>gi|190407309|gb|EDV10576.1| structural maintenance of chromosome 5 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 1093

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 6/120 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + + +F  Y            + +G NG GK+  + A+     G+     R     D
Sbjct: 42  IIKIRLQDFVTYTLTEFNLSPSLNMIIGPNGSGKSTFVCAVCLGLAGKPEYIGRSKKVED 101

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             + G      +   +          I+     D +++  +I     R  D L    ++S
Sbjct: 102 FIKNGQD---VSKIEITLKNSPNVTDIEYIDARDETIKITRIITRSKRRSDYLINDYQVS 158


>gi|114686914|ref|XP_515195.2| PREDICTED: structural maintenance of chromosomes protein 1B isoform
           2 [Pan troglodytes]
          Length = 1235

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 62/155 (40%), Gaps = 16/155 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
            ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3   HLELLLVENFKSWRGHQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQ 62

Query: 63  DVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKH 119
           ++   G+      S+ A V+ +        K   R  R      + ND ++     + + 
Sbjct: 63  ELI-HGAHIGKPISSSASVKIIYVEESGEEKTFARIIRGGCSEFRFNDNLVSRSVYIAEL 121

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
            +I  +V + + +               ER +F +
Sbjct: 122 EKIGIIVKAQNCLVFQGTVESISVKKPKERTQFFE 156


>gi|104780919|ref|YP_607417.1| chromosome segregation SMC protein [Pseudomonas entomophila L48]
 gi|95109906|emb|CAK14611.1| Putative chromosome segregation SMC protein [Pseudomonas
           entomophila L48]
          Length = 1162

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 101/324 (31%), Gaps = 44/324 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIRLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLAD----------ISIKLETRDDR-SVRCLQINDV 108
             DV   GS S    + A +E +   +D            I +  +  R       +N  
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELVFDNSDNTLVGEYAAYAEISIRRKVTRDGQNTYFLNGA 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               E R F++             +
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEELRNFIEE---------AAGI 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
             ++   R     +     + +  + +  ++     +++               E   K 
Sbjct: 171 SKYKERRRETENRIRRTQENLARLTDLREELERQLERLHRQAQAAEKYREYKAQERQLKA 230

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH-------RSD 272
               ++         + +      +  +   + + R  D+   R   G H       +  
Sbjct: 231 CLSALRWRDLDERVRQRETVIGDQEIAFEALVAEQRNADASIERLRDGHHELSERFNQVQ 290

Query: 273 LIVDYCDKAITIAHGS--TGEQKV 294
                    I     S   G+Q++
Sbjct: 291 GRFYSVAGDIARVEQSIQHGQQRL 314



 Score = 36.0 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 93/240 (38%), Gaps = 37/240 (15%)

Query: 163  ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-INALSSLIMEYVQKENF 221
             + ++   +LL++GY      ++++AQ +E G +  + +VE  I  L ++ +  +++   
Sbjct: 915  RKTLQE--QLLSDGYDLQGVLATLDAQASEQGTEQELEQVEARIQRLGAINLAAIEEYEQ 972

Query: 222  PHIKLSLTGFLDGKFDQSFCALKEEYAK--KLFDGRKMDSMSRRT---------LIGPHR 270
               +       D    ++   L+    K  K    R  D+  +           + G   
Sbjct: 973  QSERKRYLDAQDADLVEALETLENVIRKIDKETRNRFKDTFDQINAGLQALFPKVFGGGS 1032

Query: 271  SDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
            + L +   D               K  TI   S GE+ +  + +  A  +L       AP
Sbjct: 1033 AYLELTGEDLLDTGVTIMARPPGKKNSTIHLLSGGEKALTALALVFAIFKL-----NPAP 1087

Query: 316  ILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDKSVFDSLNETAKFMRISNHQALC 374
              +LDE+ A LD+       R+V ++   + F+  T   +   + +  + M ++ H+  C
Sbjct: 1088 FCMLDEVDAPLDDANVGRYARLVKEMSESVQFIYITHNKIAMEMAD--QLMGVTMHEPGC 1145


>gi|4127535|emb|CAA09427.1| RecN protein [Geobacillus stearothermophilus]
          Length = 56

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 27/49 (55%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +  L+I  F    SL + FD   T+  G+ G GK+ I++AI  L  GRG
Sbjct: 2  LAELSIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG 50


>gi|322496433|emb|CBZ31503.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1210

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY- 61
          +++K + I  F++YA  +             G NG GK+NI +AI F+      +R    
Sbjct: 1  MRVKSIVIDGFKSYAHRKELADLSPHFNAITGLNGSGKSNIFDAICFVMGITNLKRVRAE 60

Query: 62 --ADVT-RIGSPSFFSTFARVE 80
             ++  R G+    +    +E
Sbjct: 61 DPRELIFRAGTTGVHAARVTIE 82


>gi|322495597|emb|CBZ30902.1| putative structural maintenance of chromosome (SMC) family
          protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 1322

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 6  KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-------SPGRGFR 57
          KI  + +  F++Y     +      T  VG NG GK+N+++A+SF+       +     R
Sbjct: 4  KIHRVELDNFKSYYGKAVIGPFKDFTCIVGPNGAGKSNLMDALSFVLSNTVTQASASSMR 63

Query: 58 RASYADVTRIGSPSF 72
            S  D     + + 
Sbjct: 64 GKSAVDFIHRKAKTA 78


>gi|291539152|emb|CBL12263.1| hypothetical protein RO1_16780 [Roseburia intestinalis XB6B4]
          Length = 522

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/384 (11%), Positives = 124/384 (32%), Gaps = 52/384 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS-----PGRGFRRA 59
           +K+   ++  +R+  + R +     T+ VG N  GK+NIL A++             R  
Sbjct: 1   MKLSDFSVINYRSITTARKIHTNNMTVLVGKNNEGKSNILRALTLAMDIMKLYAMNPRML 60

Query: 60  SYADV---TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV--- 113
           S + V    R      +    +     GL+ + +  E  +       QI  + +      
Sbjct: 61  STSRVYLQGRYNWERDYPVSLQEVNPNGLSSVDLTFELSEHEINDIRQITGIRLSSYIPV 120

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
                H  +   +P            +++ ++ +   ID      +   +  ++      
Sbjct: 121 RVSINHSTVKIDIPKRGTAAFSNPNNKQKIIEYVCNKIDFNFIPAVRTEQDALK------ 174

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
                  +    ++              V++IN L   +++ + ++    ++  L    +
Sbjct: 175 VIESLIETELKVLD------SNDEYTNAVDVINKLQQDVLDNISRQIISPMREFLPALRN 228

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            +   S     ++    L    ++            + D                 G + 
Sbjct: 229 IQIKIS----NDKRRNALRRNAEIIIDDGTATSIQQKGD-----------------GIKS 267

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD--IGSQIFMTGTD 351
           +  + +       IS       ++ ++E  +HL  +    L+  +    +  Q+ +T T 
Sbjct: 268 LTALAML-----NISEQRDCVSVIAIEEPESHLHPESARQLYDTICSLALNHQVVLT-TH 321

Query: 352 KSVFDSLNETAKFMRISNHQALCI 375
             +F +    ++ + ++  +A+ +
Sbjct: 322 SPLFVNRTNLSENIIVNEGKAIPV 345


>gi|254519216|ref|ZP_05131272.1| chromosome segregation protein SMC [Clostridium sp. 7_2_43FAA]
 gi|226912965|gb|EEH98166.1| chromosome segregation protein SMC [Clostridium sp. 7_2_43FAA]
          Length = 1187

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          + +K L I  F+++A   +L F    T  VG NG GK+NI +++ ++   +     R   
Sbjct: 1  MFLKSLEIRGFKSFADKTQLKFKKGVTAVVGPNGSGKSNISDSVRWVLGEQSVKTLRGGK 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MEDVIFAGTQ 70


>gi|283796587|ref|ZP_06345740.1| hypothetical protein CLOM621_06518 [Clostridium sp. M62/1]
 gi|291076000|gb|EFE13364.1| hypothetical protein CLOM621_06518 [Clostridium sp. M62/1]
          Length = 668

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++I  +++ +S     +   T  +G+NG GK+NIL A+ +           Y ++
Sbjct: 1   MSLVEISIKNYKSISSCVFRLN-GVTALLGENGTGKSNILSAVRYF----------YDNL 49

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                      F     +    +I++  +    +    + + +   R      K L IS
Sbjct: 50  ISRSESD--EIFDHNNRLNNRVEIALTYDLGRLKQYARVNLRNEETRYASYYEKILGIS 106


>gi|307154040|ref|YP_003889424.1| SMC domain-containing protein [Cyanothece sp. PCC 7822]
 gi|306984268|gb|ADN16149.1| SMC domain protein [Cyanothece sp. PCC 7822]
          Length = 435

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K +    F+N+    L      T+ VG+N  GK+NI +A+ FL
Sbjct: 2  LKKIRFKNFKNFQDAELSLG-NFTLLVGENATGKSNIRDALRFL 44


>gi|254411737|ref|ZP_05025513.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181459|gb|EDX76447.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 354

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 66/390 (16%), Positives = 141/390 (36%), Gaps = 63/390 (16%)

Query: 5   IKIKFLNISEFR---N-----YASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPG 53
           +K++ + +  F+   N     +            + +G NG GKT++L+AI+    ++ G
Sbjct: 1   MKVQSVELKYFKKFSNPPVFDFTDSETGLARDIIVLIGMNGAGKTSLLQAIAATLGVATG 60

Query: 54  RGFRRASYADVTRIGSPSFFSTFARVEG---MEGLADISIKLETRDDRSVRCLQINDVVI 110
           R         + ++    +      + G        ++++K++   +      + N  + 
Sbjct: 61  R---------LQKLPDLDWVGFNYELLGNNWDRFEPEVTLKVQFSSEELHAVQEFNHKLQ 111

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAID-PRHRRRMID------ 161
               E+++HL +    P+ D + +      R   D+   +F      + ++++       
Sbjct: 112 ----EMDRHLPV---PPAEDYLATLRWQGERVQADKAAQLFQFKGRDYAKQLLRSEGFQV 164

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           FER+        TE    +S  S    Q  E+   I   R+       S   ++ Q    
Sbjct: 165 FERVGT--VFWYTEQRTSTSLTSENPDQKIEITENILRDRL-------SKWRQFHQDVET 215

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
             IK      L       +  +++ Y K   +      + R  +           Y  K 
Sbjct: 216 GRIK-----QLRPGQKDVYAEIEQAYQKVFPERSFEGPVPRENIDDILSEPWFYLYDGKN 270

Query: 282 I-TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
              I+  S GE+ +  + +  A+  +         ++L+DE+  HL    + AL R +  
Sbjct: 271 QYEISELSGGERAIFPILMDFANWNI------HNSVILIDELELHLHPPMQQALLRNLLK 324

Query: 341 IG--SQIFMTGTDKSVFDSLNETAKFMRIS 368
           +G  +Q  +T T     + L   A  +R+ 
Sbjct: 325 LGKNNQFIIT-THSDYVEQLVPEAHIIRLE 353


>gi|6324539|ref|NP_014608.1| Smc5p [Saccharomyces cerevisiae S288c]
 gi|74627239|sp|Q08204|SMC5_YEAST RecName: Full=Structural maintenance of chromosomes protein 5
 gi|1419827|emb|CAA99034.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814854|tpg|DAA10747.1| TPA: Smc5p [Saccharomyces cerevisiae S288c]
          Length = 1093

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 6/120 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + + +F  Y            + +G NG GK+  + A+     G+     R     D
Sbjct: 42  IIKIRLQDFVTYTLTEFNLSPSLNMIIGPNGSGKSTFVCAVCLGLAGKPEYIGRSKKVED 101

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             + G      +   +          I+     D +++  +I     R  D L    ++S
Sbjct: 102 FIKNGQD---VSKIEITLKNSPNVTDIEYIDARDETIKITRIITRSKRRSDYLINDYQVS 158


>gi|331005830|ref|ZP_08329186.1| hypothetical protein IMCC1989_2484 [gamma proteobacterium
          IMCC1989]
 gi|330420369|gb|EGG94679.1| hypothetical protein IMCC1989_2484 [gamma proteobacterium
          IMCC1989]
          Length = 661

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +KIK   I  +R    + L  D + T+ VG N  GKT++ E        R F  ++    
Sbjct: 1  MKIKSARIKNYRLLKDVCLSLDDRTTLIVGRNNTGKTSLAE------IFRSFLSST-GPK 53

Query: 65 TRIG 68
           R  
Sbjct: 54 IRYE 57


>gi|170700486|ref|ZP_02891491.1| DNA repair protein RecN [Burkholderia ambifaria IOP40-10]
 gi|170134610|gb|EDT02933.1| DNA repair protein RecN [Burkholderia ambifaria IOP40-10]
          Length = 549

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 89/252 (35%), Gaps = 30/252 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++     A+ ++ L    D + R    IN     +  + 
Sbjct: 57  AGCGRADITAEFTPHDRVARWLDEHAFDAEDTVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 ELGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAD--AANVARAWRVWRDATQAID 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+  +    H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQPDEW-DEVGSEHKRLSHSANLIA 223

Query: 235 KFDQSFCALKEE 246
               +  AL E 
Sbjct: 224 GVQGALNALSEA 235


>gi|163843676|ref|YP_001628080.1| DNA repair protein RecN [Brucella suis ATCC 23445]
 gi|163674399|gb|ABY38510.1| DNA repair protein RecN [Brucella suis ATCC 23445]
          Length = 559

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 67/206 (32%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L + F +  ++  G+ G GK+ +L+++S     RG      A + R
Sbjct: 2   LSHLSIRDIVLIERLDIEFRSGLSVLTGETGAGKSILLDSLSLALGARG-----DASLVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRV 112
            G+                   F R  G +   DI ++     D   R    +    + +
Sbjct: 57  HGADQGQVTAVFDVPGNHPARLFLRENGFDDDGDIILRRLQMGDGRTRVFINDQAASLAL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMR 167
           + +L K L           +    +   R  LD          +     +   D E  + 
Sbjct: 117 LRDLGKRLVEIHGQHDDRALI--DTDLHRTLLDAFGGLDAQAMLVRERHKAWRDAESALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
                + +   +  +  S   ++ +L
Sbjct: 175 KHRARVEQAEREGDYLRSSVEELTKL 200


>gi|326422574|gb|EGD71969.1| hypothetical protein CSMARM5_0116 [Candidatus Parvarchaeum
          acidophilus ARMAN-5_'5-way FS']
          Length = 796

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 27/50 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + +  +N+   R+++  ++ F     I  G+ G GK++IL ++ +   G+
Sbjct: 1  MILSEINLENIRSHSITKIKFSEGINIITGNTGSGKSSILMSVEYALFGK 50


>gi|321398912|emb|CAM65349.2| putative structural maintenance of chromosome (SMC) [Leishmania
          infantum JPCM5]
          Length = 1210

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY- 61
          +++K + I  F++YA  +             G NG GK+NI +AI F+      +R    
Sbjct: 1  MRVKSIVIDGFKSYAHRKELADLSPHFNAITGLNGSGKSNIFDAICFVMGITNLKRVRAE 60

Query: 62 --ADVT-RIGSPSFFSTFARVE 80
             ++  R G+    +    +E
Sbjct: 61 DPRELIFRAGTTGVHAARVTIE 82


>gi|309804247|ref|ZP_07698324.1| DNA repair protein RecN [Lactobacillus iners LactinV 11V1-d]
 gi|308163650|gb|EFO65920.1| DNA repair protein RecN [Lactobacillus iners LactinV 11V1-d]
          Length = 559

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 80/210 (38%), Gaps = 33/210 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F    T+ +G+ G GK+ I++A+S L   R     +  D+ R
Sbjct: 2   LVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSR-----AQIDMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F+  +  + L D+ I+     D            +    ++IN     I
Sbjct: 57  SGESKAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL----- 165
            V+  L+++L        M  +           ++ +    +   +  +  ++++     
Sbjct: 117 NVLKNLSQYLVDIHGQRDMQILMDQDL-----HINLLDNYANNDFKESLCQYQKIYAKWQ 171

Query: 166 -MRGRNRLLTEGYFDSSWC-SSIEAQMAEL 193
            ++ R   + +   + +     +E Q+ EL
Sbjct: 172 EIKQRLSAIRKNAQEIAQKHDILEYQLNEL 201


>gi|302916893|ref|XP_003052257.1| condensin complex component SMC3 [Nectria haematococca mpVI
          77-13-4]
 gi|256733196|gb|EEU46544.1| condensin complex component SMC3 [Nectria haematococca mpVI
          77-13-4]
          Length = 1197

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F ++  + VG NG GK+N   AI F
Sbjct: 1  MYIKQIIIQGFKSYKDQTVIEPFSSKTNVIVGRNGSGKSNFFAAIRF 47



 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 96/281 (34%), Gaps = 27/281 (9%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
            + +  +   +IS K+E    R  + L+   +      EL K +R   ++P          
Sbjct: 892  KAQREQRQQEISGKIEKHKKRMDKSLRQKALWTARAAELAKTIRDLGVLPEEAFDKYENM 951

Query: 138  MERRRFL--DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
             E+   +  +  +      +++    +      +++L+       +  +SIE    EL  
Sbjct: 952  EEKTVSIIVNEALKKYKHVNKKAFEQYNSFTTQQDQLMKRRKELDASQTSIE----ELVE 1007

Query: 196  KINIARVEMINALSSLIMEYVQKENF---PHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
             ++  + E I      + +          P     L         Q      E       
Sbjct: 1008 HLDRRKDEAIERTFKQVSKEFSTIFGKLVPAGHGRLLIQRRTDRRQEPADDSE------- 1060

Query: 253  DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             G    ++     +G   S     + D+   I   S G++ +  + +  A        T 
Sbjct: 1061 -GETRGAVENYIGVGISVS-FNSKHLDEQQKIQQLSGGQKSLCALCLIFAL-----QATE 1113

Query: 313  FAPILLLDEISAHLDEDKRNALFRIV----TDIGSQIFMTG 349
             +P+++ DE+ A+LD   R A+  ++     +IG+Q   T 
Sbjct: 1114 SSPMVIFDEVDANLDAQYRTAVAALLDSISNEIGTQFICTT 1154


>gi|288941264|ref|YP_003443504.1| hypothetical protein Alvin_1539 [Allochromatium vinosum DSM 180]
 gi|288896636|gb|ADC62472.1| conserved hypothetical protein [Allochromatium vinosum DSM 180]
          Length = 387

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +  L +  +RN+  + +    +  +  G N  GK+N+L+   FL
Sbjct: 1  MIVTRLKLKNWRNFREVDVPLGPRAYVI-GANAAGKSNLLDVFRFL 45


>gi|208779772|ref|ZP_03247116.1| hypothetical protein FTG_0517 [Francisella novicida FTG]
 gi|208744227|gb|EDZ90527.1| hypothetical protein FTG_0517 [Francisella novicida FTG]
          Length = 388

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 8/136 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I+ +R+   L +    +  I  G N  GK+N+ +A+  L+        +   V  
Sbjct: 2   LKTLAINHYRSLFDLVIPL-KKLNIITGVNASGKSNLYKALRLLAET------AEGGVIH 54

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +           G E ++   IK E     + +   +  + +   D+L  +       
Sbjct: 55  SLAKEGGLNTTFWAGPEKISRQMIKGEVAIQGNSKQN-VARLRLGFADDLFGYSISLGYP 113

Query: 127 PSMDRIFSGLSMERRR 142
                 FS     +R 
Sbjct: 114 EPSLSAFSLDPEIKRE 129


>gi|229916246|ref|YP_002884892.1| DNA repair protein RecN [Exiguobacterium sp. AT1b]
 gi|229467675|gb|ACQ69447.1| DNA repair protein RecN [Exiguobacterium sp. AT1b]
          Length = 565

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 90/273 (32%), Gaps = 55/273 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +F     L + F+   T+  G+ G GK+ +L+AI  L  GRG      ++  R
Sbjct: 2   LAELSIKQFAIIDELNIPFNRGMTVLTGETGAGKSILLDAIGLLVGGRG-----SSEFVR 56

Query: 67  IG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDV--VIR 111
            G             P      A  +    + D ++ L      S + + ++N     + 
Sbjct: 57  YGQDKAEIEGLFMIEPDHPVIEAAEQYGIDVEDGTVILRRDLHSSGKSVCRVNGKMMPLS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRH-------------R 156
            + E  + L           +            F ++ +  +   +              
Sbjct: 117 TLREFGRLLVDIHGQHEHQHLMDAEFHLGILDHFAEKEISPLVEEYQTAYAAWKQVADEL 176

Query: 157 RRMIDFERLMRGRNRLLTEGY--FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
           +R+   E+ +  R  LL+      +++     E Q       +   R E+ N        
Sbjct: 177 KRLSQSEQELAQRMDLLSFQTKEIEAAELKVGEEQ------ALTEERDELAN-----FER 225

Query: 215 YVQKENFPHIKLSLTGFLDGK--FDQSFCALKE 245
             Q     HI+LS     +     DQ   A++E
Sbjct: 226 IHQ-----HIRLSYEAVAEESNGLDQIGVAMRE 253


>gi|154332077|ref|XP_001561855.1| structural maintenance of chromosome (SMC) [Leishmania
          braziliensis MHOM/BR/75/M2904]
 gi|134059176|emb|CAM36875.1| putative structural maintenance of chromosome (SMC) [Leishmania
          braziliensis MHOM/BR/75/M2904]
          Length = 1208

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY- 61
          +++K + I  F++YA  +             G NG GK+NI +AI F+      +R    
Sbjct: 1  MRVKSIVIDGFKSYAHRKELADLSPHFNAITGLNGSGKSNIFDAICFVMGITNLKRVRAE 60

Query: 62 --ADVT-RIGSPSFFSTFARVE 80
             ++  R G+    +    +E
Sbjct: 61 DPRELIFRAGTTGVHAARVTIE 82


>gi|148544402|ref|YP_001271772.1| DNA repair protein RecN [Lactobacillus reuteri DSM 20016]
 gi|184153765|ref|YP_001842106.1| DNA repair protein RecN [Lactobacillus reuteri JCM 1112]
 gi|227363173|ref|ZP_03847307.1| DNA repair protein RecN [Lactobacillus reuteri MM2-3]
 gi|325682722|ref|ZP_08162238.1| DNA repair protein RecN [Lactobacillus reuteri MM4-1A]
 gi|148531436|gb|ABQ83435.1| DNA replication and repair protein RecN [Lactobacillus reuteri DSM
           20016]
 gi|183225109|dbj|BAG25626.1| DNA repair protein RecN [Lactobacillus reuteri JCM 1112]
 gi|227071779|gb|EEI10068.1| DNA repair protein RecN [Lactobacillus reuteri MM2-3]
 gi|324977072|gb|EGC14023.1| DNA repair protein RecN [Lactobacillus reuteri MM4-1A]
          Length = 559

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 65/198 (32%), Gaps = 23/198 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L F  Q T+  G+ G GK+ I++A+  L+ GRG       +  R
Sbjct: 2   LQELTIDNLAIIKHLTLTFADQMTVLTGETGAGKSIIIDAVGLLAGGRG-----SQEFIR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
            G                 F       G++    I I            ++IN  +I   
Sbjct: 57  RGEEKLSLQGQFAIPDDPEFDNLLESLGIDHEDGILIVSREIHRNGRNIIRINGQLINTA 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA-IDPRHRRRMIDFERLMRGRN 170
            + ++   L          ++           LD+     + P  ++   +++   + + 
Sbjct: 117 TLRQIGAGLVDIQGQNEHQQLMQ--PETHLGMLDQFAAKEVQPLLQKYQEEYQAYSKLKA 174

Query: 171 RLLTEGYFDSSWCSSIEA 188
            +  +   +  W   ++ 
Sbjct: 175 AVNKKQANEQQWAQRLDM 192


>gi|302756115|ref|XP_002961481.1| hypothetical protein SELMODRAFT_60327 [Selaginella
          moellendorffii]
 gi|300170140|gb|EFJ36741.1| hypothetical protein SELMODRAFT_60327 [Selaginella
          moellendorffii]
          Length = 1038

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
          I  + +  F  +++L + F        G NG GK+ IL A+      R     R  S  D
Sbjct: 4  IARIRVENFMCHSNLSIDFVDNVNFITGQNGSGKSAILTALCIAFGIRARGTQRATSLND 63

Query: 64 VTRIGSPSFFSTF 76
            + G        
Sbjct: 64 FIKTGCSYALVVV 76


>gi|119510679|ref|ZP_01629807.1| ATP binding protein [Nodularia spumigena CCY9414]
 gi|119464633|gb|EAW45542.1| ATP binding protein [Nodularia spumigena CCY9414]
          Length = 423

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL 50
          +K+K L +  FR    L L F+    TI +G NGVGK++I+E ++ L
Sbjct: 1  MKVKRLKMQSFRGIGDLTLDFNQNEPTILIGINGVGKSSIIECLAIL 47


>gi|170725207|ref|YP_001759233.1| hypothetical protein Swoo_0843 [Shewanella woodyi ATCC 51908]
 gi|169810554|gb|ACA85138.1| conserved hypothetical protein [Shewanella woodyi ATCC 51908]
          Length = 393

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 11/138 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  +R+   +R+  + +  +  G NG GK+N+ +A+  L+            +  
Sbjct: 2   LTTLAIQNYRSLREIRVPLE-RLNLVTGANGSGKSNLYKALRLLAQTAQ--GGVVNALAL 58

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G    SF++    +    G+      +E    +  + L++        DE +  + +  
Sbjct: 59  EGGLDSSFWAGPETISK--GMRSGETPIEPTVRQHAKRLKLG----FASDEYSYLIELGL 112

Query: 125 LVPSMDRIFSGLSMERRR 142
             P    +F      +R 
Sbjct: 113 PKPDSTTLFGLDPQVKRE 130


>gi|305665873|ref|YP_003862160.1| iron(III) ABC transporter ATP-binding protein [Maribacter sp.
           HTCC2170]
 gi|88710648|gb|EAR02880.1| iron(III) ABC transporter ATP-binding protein [Maribacter sp.
           HTCC2170]
          Length = 328

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 18/147 (12%)

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           +L   FD       EE   +     + + +  RT       ++        + + + S G
Sbjct: 81  YLSQDFDLMPFTSVEENIGQFLSVFEPEHLKERTSELLEMIEMTKF---AKVKVKYLSGG 137

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK----RNALFRIVTDIGSQIF 346
           +Q+ V +   LA             +LLLDE  +H+D  +    R  LF  + +    + 
Sbjct: 138 QQQRVALARVLAQ---------RPKVLLLDEPFSHIDNFRKNSLRRNLFGFLKEKDVTV- 187

Query: 347 MTGTDKSVFDSLNETAKFMRISNHQAL 373
           +T T     D L      + + +H+ +
Sbjct: 188 ITATH-DHNDMLPFADTVVVLKDHKII 213


>gi|322778931|gb|EFZ09347.1| hypothetical protein SINV_80256 [Solenopsis invicta]
          Length = 1374

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 6  KIKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
          K++ L++   RN+        + F    T+ +G NG GKT I+EA+ F + G  F     
Sbjct: 3  KVRRLSLRGIRNFGDDSEDALIRFSCPLTLILGANGTGKTTIIEALKFATTG-SFPPTGD 61

Query: 62 AD 63
            
Sbjct: 62 RP 63



 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 34/223 (15%)

Query: 163  ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
            + L+R +N  L               ++ +   +  +AR    N     I   VQ++   
Sbjct: 1076 QALLRQKNVALGNQEELERVIKQYTHELQK--EEYRLARRNYNNK---CIELTVQEDTIA 1130

Query: 223  HIKLSLTGFLD---GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD------- 272
            ++K +    LD    ++ +   +   +  +KL+      + +    I    +        
Sbjct: 1131 NLK-AYNKILDVAMIEYHEERMSTVNKIMRKLWKHVYKGTDTSSIEICTEPTKETANNRR 1189

Query: 273  ------LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
                  +   +  K       S G++ +  + I LA A       G   IL LDE + +L
Sbjct: 1190 SYCYKLMQTKHGCKMDMRGRCSAGQKVLASIIIRLALAETFCKNCG---ILALDEPTTNL 1246

Query: 327  DEDKRNALFRIVT---------DIGSQIFMTGTDKSVFDSLNE 360
            DE+   +L  ++T             Q+ +   D+     L +
Sbjct: 1247 DEENAKSLADMLTKVVELRSKHQKNFQLIIISHDEKFLQKLAD 1289


>gi|309810792|ref|ZP_07704598.1| DNA repair protein RecN [Dermacoccus sp. Ellin185]
 gi|308435272|gb|EFP59098.1| DNA repair protein RecN [Dermacoccus sp. Ellin185]
          Length = 583

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 22/206 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I      A   L       +  G+ G GKT ++  +  L   R     + AD  R
Sbjct: 5   LREIRIRNMGVIADATLELSPGLNVVTGETGAGKTMVVSGLGLLLGER-----ADADRVR 59

Query: 67  IGSPSFFS--------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            G  S                  +    D+    E    RSV     +   +        
Sbjct: 60  TGEKSALVEGFLDVPGEHVSAAALADEFDVEAGDEVILSRSVAATGRSRAQVAGRSVPAG 119

Query: 119 HLR-----ISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERLMRGR 169
            L      +  +    D+       E R+ LD      +  +  R+R   +  + L   R
Sbjct: 120 VLARIGHELVAVHGQADQWRLKQPEEHRQILDAFAGPELSELAQRYRDGYVRLKALRAER 179

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGV 195
             L  +    +   + +EA +A +  
Sbjct: 180 RELTLKAQERAQRLTMLEAGIARIDE 205


>gi|167760229|ref|ZP_02432356.1| hypothetical protein CLOSCI_02602 [Clostridium scindens ATCC
          35704]
 gi|167662112|gb|EDS06242.1| hypothetical protein CLOSCI_02602 [Clostridium scindens ATCC
          35704]
          Length = 677

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          +++  + I  +R      L  D++ T+ VG N   KT+  E I  +  G  F
Sbjct: 16 MRLSKIKIKNYRLLIDAELEVDSKTTLIVGRNNTAKTSCFECIGKVLDGTPF 67


>gi|194473650|ref|NP_001123970.1| structural maintenance of chromosomes protein 1B [Rattus
          norvegicus]
 gi|149065716|gb|EDM15589.1| SMC (structural maintenace of chromosomes 1)-like 2 (S.
          cerevisiae) (predicted) [Rattus norvegicus]
          Length = 1247

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3  HLELLLVENFKSWRGRQVIGPFKRFTCIIGPNGSGKSNVMDALSFVMGEKTTNLRVKNIQ 62

Query: 63 DVTR 66
          ++  
Sbjct: 63 ELIH 66


>gi|319778399|ref|YP_004129312.1| DNA repair protein RecN [Taylorella equigenitalis MCE9]
 gi|317108423|gb|ADU91169.1| DNA repair protein RecN [Taylorella equigenitalis MCE9]
          Length = 559

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 79/241 (32%), Gaps = 31/241 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +F       + F    T+F G+ G GK+ +++A+  L+ G+  R +  A V R
Sbjct: 2   LISLHIRDFVIVDRADINFKNGFTVFTGETGAGKSILIDAL-LLTLGQ--RAS--ASVIR 56

Query: 67  IGSPSFFSTFA---------RVEGMEGLADISIKLETRDDRSVRCLQINDVV--IRVVDE 115
            G      +            +   +  AD  I     D  S     IN V   +  + E
Sbjct: 57  SGCTKADISSVFSVDDELRSWLTERDFEADELILRRVIDSNSNSKAYINGVPSTLAQMKE 116

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH--RRRMIDFERLMRG----- 168
           L + L       +   +    S   R  LD     I   H        ++  +       
Sbjct: 117 LAELLIDIHGQHAHQLLLRAQSQ--RNLLDTQGGHISLVHELSSAWSKWQYSLAQLEEAK 174

Query: 169 -RNRLLTEGYFDSSWCSSIEAQMAEL---GVKINIA--RVEMINALSSLIMEYVQKENFP 222
            R++ +        W      ++A +     +IN    R+     L   +   + K +  
Sbjct: 175 SRSQNIEREIAQVQWELGEIQELAPIEGEWERINEEHTRLSNAEELIEGVARIINKLDKE 234

Query: 223 H 223
            
Sbjct: 235 S 235


>gi|213970095|ref|ZP_03398227.1| ATP binding protein [Pseudomonas syringae pv. tomato T1]
 gi|301381452|ref|ZP_07229870.1| ATP binding protein [Pseudomonas syringae pv. tomato Max13]
 gi|302061440|ref|ZP_07252981.1| ATP binding protein [Pseudomonas syringae pv. tomato K40]
 gi|213925199|gb|EEB58762.1| ATP binding protein [Pseudomonas syringae pv. tomato T1]
          Length = 452

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/382 (14%), Positives = 114/382 (29%), Gaps = 71/382 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           ++IK   +     ++ L +          + T+ VG+NG GKT +L +++        R 
Sbjct: 1   MEIKSFRLINVGRFSDLEVALAPTELHASRVTVLVGNNGAGKTTLLRSVATSLSWLVARV 60

Query: 59  ASYADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
            +   V  RI   +                       ++  +   ++++    +++D L 
Sbjct: 61  KTPKGVGIRIDEDT----------------------IQNGAATASIRVDAYNAQIIDPLI 98

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN-RLLTEG 176
           +     W         +G    R+     ++  +          +  ++  ++   L   
Sbjct: 99  RGADFYW-------EVAGTLKGRKATSSTVLGELS----MLAEGYRSVLTAKSDSSLPLL 147

Query: 177 YFDSSWCSSIEAQMAELGVKINIA---------RVEMINALSSLIMEYVQKENFPHIKLS 227
            F     S IE  +                   R            E    EN   I   
Sbjct: 148 AFYPVERSVIEIPLKVHAKHTFDQLDGYDDALGRGVDFRRFFEWFREREDSENETGIPTE 207

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS----------RRTLIGPHRS---DLI 274
           L   L          L +  +++    R     +            T +   R     + 
Sbjct: 208 LLTKLSQTISID-TELWKVLSREHASSRDRQLTAVRNAIAAFLPGFTNLRVKRKPRLHMA 266

Query: 275 VDYCDKAITIAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDED 329
           +D   + + ++  S GE+ ++ +       LA     + N      I+L+DE+  HL   
Sbjct: 267 IDKNGQTLNVSQLSQGEKSMMALVGDIARRLAMMNPALENPLHGNGIVLIDEVDLHLHPK 326

Query: 330 KRNALFRIVTDI--GSQIFMTG 349
            + +L    T      Q  +T 
Sbjct: 327 WQRSLIAQFTKTFPNCQFLLTT 348


>gi|262043861|ref|ZP_06016950.1| DNA repair protein RecN [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038795|gb|EEW39977.1| DNA repair protein RecN [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 553

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 31/207 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E   +  ++     D   R   IN   V + 
Sbjct: 57  RGATRADLCARFALKDTPAAQRWLEENQLESGRECLLRRVISADGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +   +       ++  LD       +      H R+     R +
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLTK--PEHQKTLLDGYTGEYALTQRMAEHYRQWHQSCREL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               +   E    +        Q+ EL
Sbjct: 174 AQHQQQSQERAARADLLQY---QLKEL 197


>gi|239906972|ref|YP_002953713.1| hypothetical protein DMR_23360 [Desulfovibrio magneticus RS-1]
 gi|239796838|dbj|BAH75827.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 539

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +++  L +  FR      ++F    T  +G N VGK+ +L AI  L
Sbjct: 11 MRLHSLCLRNFRRIKQATILFGD-TTFLIGPNNVGKSTVLAAIGCL 55


>gi|163732122|ref|ZP_02139568.1| DNA repair protein RecN [Roseobacter litoralis Och 149]
 gi|161394420|gb|EDQ18743.1| DNA repair protein RecN [Roseobacter litoralis Och 149]
          Length = 549

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I        L L F+    +  G+ G GK+ +L+++ F+   RG      AD+ R
Sbjct: 2  LRGLDIQNMLIIDRLELAFEPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RADLVR 56

Query: 67 IGSPSFFST 75
           G+     T
Sbjct: 57 QGAEQGEVT 65


>gi|154296273|ref|XP_001548568.1| hypothetical protein BC1G_12963 [Botryotinia fuckeliana B05.10]
 gi|150843421|gb|EDN18614.1| hypothetical protein BC1G_12963 [Botryotinia fuckeliana B05.10]
          Length = 1094

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
            I  + ++ F  Y S      +   + +G NG GK++++ A+  L  G       R    
Sbjct: 80  AIVRVKLNNFVTYESAEFFPGSNLNMVIGPNGTGKSSVVCALC-LGLGSSPKNLGRADKV 138

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            +  + GS   F      +      +  IK     D +     IN+  
Sbjct: 139 GEFVKHGSRDAFIEIELQKRSNEHENYIIKTRIIKDGNSCEFWINNKK 186


>gi|159042719|ref|YP_001531513.1| chromosome segregation protein SMC [Dinoroseobacter shibae DFL 12]
 gi|157910479|gb|ABV91912.1| chromosome segregation protein SMC [Dinoroseobacter shibae DFL 12]
          Length = 1150

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 61/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFTRLRLNGFKSFVDPTDLIIGDGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+ S     F      ++  +  A         +++  R  R V    + N  
Sbjct: 61  MEDVIFAGAASRPARNFAEVALILDNSDRRAPAGFNDTDQLEIIRRITRDVGSAYKTNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + +     RRR L+
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKARRRILE 165


>gi|115350691|ref|YP_772530.1| DNA repair protein RecN [Burkholderia ambifaria AMMD]
 gi|115280679|gb|ABI86196.1| DNA replication and repair protein RecN [Burkholderia ambifaria
           AMMD]
          Length = 549

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 89/252 (35%), Gaps = 30/252 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++     A+ ++ L    D + R    IN     +  + 
Sbjct: 57  AGCGRADITAEFTPHDRVARWLDEHAFDAEDTVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 ELGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAD--AANVARAWRVWRDATQAID 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+  +    H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQPGEW-DEVGSEHKRLSHSANLIA 223

Query: 235 KFDQSFCALKEE 246
               +  AL E 
Sbjct: 224 GVQGALNALSEA 235


>gi|46124223|ref|XP_386665.1| hypothetical protein FG06489.1 [Gibberella zeae PH-1]
          Length = 1062

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 31/179 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA---SYAD 63
           ++ +   +FRN       F    T+ VGDNG GK+ I+EAI +   GR  R         
Sbjct: 460 VQHVITIDFRN------DFPRGLTLLVGDNGSGKSTIVEAIVWCQFGRCIRSGMAVKDVP 513

Query: 64  VTRIGSP-----SFFSTFARVEGMEGLADISI-----------KLETRDDRSVRCLQIND 107
              IG        F + +A     +     +            +LE  D R+ +   IND
Sbjct: 514 NDTIGKNCSVTLEFANGYAITRYRQHKIHKNRVVVTLHGTPQPQLELPDARATQAA-IND 572

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
            +    D       +     S     +     RR  ++  +               +L+
Sbjct: 573 FLGTDYDTYVGT--VVLSQESAASFINSRPAHRRELIEASLGL---PMLDHWGQISKLL 626


>gi|164657177|ref|XP_001729715.1| hypothetical protein MGL_3259 [Malassezia globosa CBS 7966]
 gi|159103608|gb|EDP42501.1| hypothetical protein MGL_3259 [Malassezia globosa CBS 7966]
          Length = 1169

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK L I  F+++        F     + VG NG GK+N   AI F
Sbjct: 1  MFIKALKIHGFKSFRDADSITSFSPGLNVVVGRNGSGKSNFFAAIRF 47



 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 12/191 (6%)

Query: 163  ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF- 221
            +R        L          + +  +  E     +  R  ++     L   +   +   
Sbjct: 942  KRSTEQLAAQLQRVRASLDEVAHVNKRAVEQFHSFSKQRDTLLQRHKDLAASHASIDELV 1001

Query: 222  PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
              +       LD  F Q      E +A+ +  GR    +     IG    D+      + 
Sbjct: 1002 EVLDARKAAALDATFHQVAAHFTEIFAELVPGGRGR--LVMHNGIGVSM-DVSFHAGQER 1058

Query: 282  ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
            + +   S G++ +V + +  A        +  AP  L DEI A+LD   R A+ + V  +
Sbjct: 1059 MRMTQLSGGQKSLVALALVFA-----IQQSDPAPFYLFDEIDANLDTQYRTAVAQKVHAL 1113

Query: 342  --GSQIFMTGT 350
               +Q F+T T
Sbjct: 1114 ARDAQ-FITTT 1123


>gi|311278426|ref|YP_003940657.1| DNA repair protein RecN [Enterobacter cloacae SCF1]
 gi|308747621|gb|ADO47373.1| DNA repair protein RecN [Enterobacter cloacae SCF1]
          Length = 553

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 28/208 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGSPS-------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     +E   +  ++     D   R   IN   V + 
Sbjct: 57  AGATRADLCARFSLKDTPAAQRWLEANQLEDGRECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +   +       ++  LD       +      H R      R +
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLTR--PEHQKTLLDGYAGEYALTQRMAEHYRLWHQSCRDL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELG 194
               +L  E    ++       ++ E  
Sbjct: 174 AQHQQLSQERAARAALLQYQLKELNEFS 201


>gi|257053797|ref|YP_003131630.1| chromosome segregation protein SMC [Halorhabdus utahensis DSM
           12940]
 gi|256692560|gb|ACV12897.1| chromosome segregation protein SMC [Halorhabdus utahensis DSM
           12940]
          Length = 1188

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 102/307 (33%), Gaps = 69/307 (22%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + I  + +  F+++    R+ F    T   G NG GK+NI++AI F   L+   G R   
Sbjct: 1   MYITEVVLDNFKSFGRKTRIPFYEDFTTISGPNGSGKSNIVDAILFALGLARTSGIRAEK 60

Query: 61  YADVT-----RIGSPSFFSTFARVEGMEGLADISIKL----------------ETRDDRS 99
             D+      + G        A VE +   +D ++                  E    R 
Sbjct: 61  LTDLIYNPGHQDGESPDREREASVEVVLDNSDRTLSRSQVVSAAGSENVGDVEEITIKRR 120

Query: 100 VRCL--------QINDVVIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRR 142
           V+           IN   +  + ++   L  + + P          +  I +  +  RR 
Sbjct: 121 VKETDDNYYSYYYINGRSVN-LGDIQDLLAQAGVAPEGYNVVMQGDVTEIINMTAGARRE 179

Query: 143 FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA-- 200
            +D +           + +F++                     +E ++ E  ++I     
Sbjct: 180 IIDEIAG---------VAEFDQKKAQAF----------EELEVVEDRIDEADLRIEEKET 220

Query: 201 RVEMINALSSLIMEY--VQKENFPHIKLSLTGFLDGKFDQSFCALKE--EYAKKLFD-GR 255
           R+E +       +EY  ++ E   +        L+ K D      +E  E  + L D  R
Sbjct: 221 RLEQLEDERETALEYQELRDEKEEYEAYRKAAELEDKRDDLAAVREEIAELEETLEDRQR 280

Query: 256 KMDSMSR 262
           ++D    
Sbjct: 281 ELDEREG 287


>gi|218245762|ref|YP_002371133.1| AAA ATPase [Cyanothece sp. PCC 8801]
 gi|218166240|gb|ACK64977.1| AAA ATPase [Cyanothece sp. PCC 8801]
          Length = 382

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          M N+ ++  L+I  FR    L L    Q  +FVG N  GKT++LEAIS        R
Sbjct: 1  MENQ-QLDSLHIHSFRGIQDLELKDLGQINLFVGVNNCGKTSVLEAISLYCNPLNLR 56


>gi|159030942|emb|CAO88632.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 268

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++ L I  FR + +  +    +  + VG N  GKT+ILEAI
Sbjct: 2  LQSLKIEGFRGFHNFEMANLGRINLLVGKNNSGKTSILEAI 42


>gi|116514469|ref|YP_813375.1| DNA repair ATPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|116093784|gb|ABJ58937.1| DNA repair ATPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 808

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 79/224 (35%), Gaps = 25/224 (11%)

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--------------VEMIN 206
           D  +L+  +  L  E        S+++ +MA L  +    R               E+ +
Sbjct: 586 DLSKLLGQKQELEKELADKQRAVSALQQEMANLLAE--EKRYASSSQVAEDKQTLAEIAD 643

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM--SRRT 264
           +      +Y+       +                  L ++Y + L  GR  + +  ++ +
Sbjct: 644 SFRRDSQDYLASLLAGEVIGRTLDLASNDRFPKMLKLAQDYLEILTGGRYREILLPAKLS 703

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
              P +   +V    K I +A+ S G Q+ +   + LA    I +       +L+D+   
Sbjct: 704 KKTPLK---VVRKDKKKIPLAYLSRGTQEQLYFALKLAFVMQIKDKIDLP--VLIDDSFV 758

Query: 325 HLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNETAKFMR 366
           + D  +   +  ++  +    QI +    + + ++++      R
Sbjct: 759 NFDGPRTGYIVDMLKKMSEDKQILVFTAREDLAEAVSAAPIRYR 802


>gi|332678421|gb|AEE87550.1| putative RecF protein [Francisella cf. novicida Fx1]
          Length = 388

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 8/136 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I+ +R+   L +    +  I  G N  GK+N+ +A+  L+        +   V  
Sbjct: 2   LKTLAINHYRSLFDLVIPL-KKLNIITGVNASGKSNLYKALRLLAET------AEGGVIH 54

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +           G E ++   IK E     + +   +  + +   D+L  +       
Sbjct: 55  SLAKEGGLNTTFWAGPEKISRQMIKGEVAIQGNSKQN-VARLRLGFADDLFGYSISLGYP 113

Query: 127 PSMDRIFSGLSMERRR 142
                 FS     +R 
Sbjct: 114 EPSLSAFSLDPEIKRE 129


>gi|320167978|gb|EFW44877.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 592

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          +  L ++ FR +            + +G NG GKT +L AI+     R +   
Sbjct: 5  LTSLQLTNFRKFKDETFHLTTSPKVIMGRNGSGKTQLLWAIAI--FLRSYNTR 55


>gi|297807615|ref|XP_002871691.1| structural maintenance of chromosomes family protein [Arabidopsis
           lyrata subsp. lyrata]
 gi|297317528|gb|EFH47950.1| structural maintenance of chromosomes family protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 1052

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 73/221 (33%), Gaps = 30/221 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  +  L     ++  + +G NG GK++++ AI+    G      R  S   
Sbjct: 23  IIDIELHNFMTFNHLVCKPGSRLNLVIGPNGSGKSSLVCAIALCLGGEPQLLGRATSVGA 82

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-INDVVIRVVD--ELNKHL 120
             + G  S    + ++       +  + +  + D   +     N   +   D  E+ +  
Sbjct: 83  YVKRGEDSG---YVKISLRGNTREEILTIFRKIDTRNKSEWMFNGNTVCKKDIVEIIQKF 139

Query: 121 RISWLVPSMDRIFSGLSMER-RRFLDRMVFAI------------DPRHRRRMIDFERLMR 167
            I       + +   L  +R   F       +             P H R ++D  R ++
Sbjct: 140 NIQV-----NNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPVHHRALVDKSRDLK 194

Query: 168 GRNRLLTEGYFDSSWCSSI-EAQMAELGVKINIARVEMINA 207
              R + +     +   ++ + Q  E  V+    R   +  
Sbjct: 195 QLERAVAKNGETLNQLKALVDEQ--EKDVERVRQRELFLTK 233


>gi|291560593|emb|CBL39393.1| hypothetical protein CL2_25590 [butyrate-producing bacterium
          SSC/2]
          Length = 574

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++I+ + I  FR+  S     + + T  VG+N  GKT +L AI
Sbjct: 1  MRIEEVKIKNFRSIKSATFRMN-KITAVVGENNAGKTAVLRAI 42


>gi|78045010|ref|YP_360275.1| chromosome segregation protein SMC [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997125|gb|ABB16024.1| chromosome segregation protein SMC [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 1185

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/204 (20%), Positives = 75/204 (36%), Gaps = 22/204 (10%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
           +K + I  F+++A    + F+   T  VG NG GK+N+ EAI +    +  +  R     
Sbjct: 2   LKKVVIQGFKSFAEKTEITFEPSITGIVGPNGSGKSNVAEAIRWALGETKTKILRSERQQ 61

Query: 63  DVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIRVV 113
           DV   GS              ++       +    I +  R  RS      IN    R+ 
Sbjct: 62  DVIFTGSQGRKPVGMAEVTLILDNSNKHFPLPYAEIAITRRFFRSGESEFYINKSPCRLK 121

Query: 114 DE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
           D         L KH         +D I      E+R +L+     I+    R +   ++L
Sbjct: 122 DIHELLVDTGLGKHGYAIIGQGQVDEILFSSPEEKRSYLE-EAAGINRFRMRELEAKKKL 180

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQ 189
           +  +N +       +   + ++A+
Sbjct: 181 LETQNGITRLNDLTNELTNQLQAK 204



 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 13/159 (8%)

Query: 195  VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            VK    R+  +N   + + E   KE    +   LT  ++ +F++    L EEY     + 
Sbjct: 997  VKRLEERINFLNQQRNDLNE--AKEQLEKLLSQLTEEMEQRFNEFLKLLNEEYDLVFKEL 1054

Query: 255  RKMDSMSRRTLIGPHRSD----LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
                  +   ++G  + +    ++     K   +   S GE+ +  + +  A   L    
Sbjct: 1055 FGGGRAALEKVVGEDQKEGIEIIVELPGKKRQPLGLLSGGERALASIALLFALFNL---- 1110

Query: 311  TGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFM 347
               +P  +LDEI A LDE         +  IG   Q+ +
Sbjct: 1111 -KPSPFCVLDEIDAALDEANVQRFAAYLKKIGERNQVIL 1148


>gi|254437428|ref|ZP_05050922.1| chromosome segregation protein SMC [Octadecabacter antarcticus 307]
 gi|198252874|gb|EDY77188.1| chromosome segregation protein SMC [Octadecabacter antarcticus 307]
          Length = 1151

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFSRLRLNGFKSFVDPTDLIIQDGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLA--------DISIKLET-RDDRSVRCLQIN 106
             DV   G+      +F      ++  E LA        ++ I     RD  S   + + 
Sbjct: 61  MEDVIFAGAATRPARNFAEVSLVIDNAERLAPAAFNDADNLEIVRRITRDVGSAYKVGVK 120

Query: 107 DVVIRVVDELNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
           DV  R V  L          P++ R      + +     RRR L+
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQIAELINSKPKARRRILE 165


>gi|116072961|ref|ZP_01470223.1| RecF protein:ABC transporter [Synechococcus sp. RS9916]
 gi|116068266|gb|EAU74018.1| RecF protein:ABC transporter [Synechococcus sp. RS9916]
          Length = 903

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 29/51 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +K+   +++  R +A+L+L F    T+  G N  GK++++EA+      RG
Sbjct: 1  MKLLSCSLNSVRRHAALKLDFHPGLTLITGANESGKSSLVEALHRTLFLRG 51


>gi|319942617|ref|ZP_08016925.1| hypothetical protein HMPREF9464_02144 [Sutterella wadsworthensis
           3_1_45B]
 gi|319803796|gb|EFW00728.1| hypothetical protein HMPREF9464_02144 [Sutterella wadsworthensis
           3_1_45B]
          Length = 555

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 19/128 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LN+ +F     L L      T+  G+ G GK+ +++AI  +   R     + AD+ R
Sbjct: 2   LTTLNLKDFVIVDQLALDLSTGFTVLTGETGAGKSILIDAIQLIRGAR-----ADADMVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIK-----------LETRDDRSVR-CLQINDVVI--RV 112
            G+         +   E L  + I            +    D++ R    IN + +    
Sbjct: 57  KGAERANIIAEFMPSEEALRWLEINDLQDSSASTVLVRRSIDKNGRSRAWINGITVTLSQ 116

Query: 113 VDELNKHL 120
           + EL   L
Sbjct: 117 LKELGDTL 124


>gi|226293184|gb|EEH48604.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1154

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 74/265 (27%), Gaps = 25/265 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +++F  Y S          + +G NG GK+ +      L      R    A+  +
Sbjct: 131 IVRVKLTDFVTYTSAEFFPGPGLNMVIGPNGTGKSTL-----HLG-----RAKDPAEFVK 180

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL-------NKH 119
            G           +G     +  I+       +     +N         L        + 
Sbjct: 181 HGCEEATIEIELAKGPGHRQNPIIRRTIVRRDNKSTFTLNGKPSTKARVLELAHSFSIQI 240

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN-RLLTEGYF 178
             +   +P                      A  P       +  + +R    +LL     
Sbjct: 241 DNLCQFLPQDKVAEFAALSPINLLHSTQRAAAGPEMIE-WHESLKTLRAEQKKLLAANAE 299

Query: 179 DSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
           D    +++    ++  + V+    R  +I    +L+ +      F   + +L      + 
Sbjct: 300 DREQLANLQNRQELQRVDVERMQQR-ALIQKKIALLEKARPIPKFQEARQALKDARQKRR 358

Query: 237 D--QSFCALKEEYAKKLFD-GRKMD 258
           D       L+ + A  L     K D
Sbjct: 359 DLHNEQMELENQLAPALKSVNEKRD 383


>gi|323499775|ref|ZP_08104734.1| recombination and repair protein [Vibrio sinaloensis DSM 21326]
 gi|323315016|gb|EGA68068.1| recombination and repair protein [Vibrio sinaloensis DSM 21326]
          Length = 554

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 89/255 (34%), Gaps = 36/255 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  + L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFSLENNIHATRWLEDNDLLDGSDCILRRIISKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG-RNR 171
           +  L + L       +  ++  G         D  +  +D ++         L++  RN 
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMKG---------DYQMAMLD-QYAGHTN----LLKSTRNA 162

Query: 172 LLTEGYFDSSWCSSIEAQMAELGV-KINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                  D++     E   A L   ++   +++ +N LS    EY + E   H +LS +G
Sbjct: 163 YQKWRQADNNLKQLKENSAANLAQKQLLEYQIKELNELSIGEDEYEELEQE-HKRLSNSG 221

Query: 231 FLDGKFDQSFCALKE 245
            L     Q+   + E
Sbjct: 222 ELASTCQQAIELIYE 236


>gi|319941615|ref|ZP_08015939.1| hypothetical protein HMPREF9464_01158 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804845|gb|EFW01699.1| hypothetical protein HMPREF9464_01158 [Sutterella wadsworthensis
           3_1_45B]
          Length = 1190

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 17/127 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           + ++ + I+ F+++A  + +         VG NG GK+NI++A+   L  GR    R +S
Sbjct: 1   MHLRQIKIAGFKSFADPVVIELRDPLIAIVGPNGCGKSNIIDAVRWVLGEGRIGELRGSS 60

Query: 61  Y-ADVTRIGSPSFFSTF-ARVEGMEGLADISIK-----------LETRDDRSVRCLQIND 107
             +++   GS        A VE +   AD  +K                   V    IN 
Sbjct: 61  SMSELIFAGSTGRAPLGRASVELVLDNADHQVKGPWGQYEELSVRRVVTKEGVSAYYINH 120

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 121 QQVRRRD 127



 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              +  T+   S GEQ +    +  A  +L       AP  LLDE+ A LDE  +  L R+
Sbjct: 1069 GKRNQTVRLLSGGEQALTATALVFAMFKL-----NPAPFCLLDEVDAPLDEANQGRLARL 1123

Query: 338  VTDI--GSQIFM 347
             T++   +Q  +
Sbjct: 1124 CTEMSVDTQFLI 1135


>gi|68481803|ref|XP_715143.1| potential nuclear cohesin complex SMC ATPase [Candida albicans
           SC5314]
 gi|68481906|ref|XP_715092.1| potential nuclear cohesin complex SMC ATPase [Candida albicans
           SC5314]
 gi|46436700|gb|EAK96058.1| potential nuclear cohesin complex SMC ATPase [Candida albicans
           SC5314]
 gi|46436753|gb|EAK96110.1| potential nuclear cohesin complex SMC ATPase [Candida albicans
           SC5314]
          Length = 1240

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 4/107 (3%)

Query: 6   KIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           ++  L +  F++Y    ++    +  T  +G NG GK+N+++AISF+        R  + 
Sbjct: 3   RLIGLELFNFKSYKGKSIIGFGSSYFTSIIGPNGAGKSNMMDAISFVLGVNSYHLRSQNL 62

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            D+   G  +  +    ++ +E     +  + T +      L++   
Sbjct: 63  KDLIYRGRRNIDTDSTTLDAIEQDPTSAYVMATYEKDDGEILKLKRT 109


>gi|312127603|ref|YP_003992477.1| DNA repair protein recn [Caldicellulosiruptor hydrothermalis 108]
 gi|311777622|gb|ADQ07108.1| DNA repair protein RecN [Caldicellulosiruptor hydrothermalis 108]
          Length = 551

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 118/329 (35%), Gaps = 60/329 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I        L + FD   TI  G+ G GK+ I++++S L   + F+     ++ R
Sbjct: 2   LKRLLIENIAIIDRLDIEFDKGLTILTGETGAGKSIIIDSLSLLLGTK-FK----KEIIR 56

Query: 67  IGS-PSFFSTFARVEG---MEGLADISIKLETR--------DDRSVRCLQIN-------- 106
            G   +  S    +E    ++ L  + I LE                  ++N        
Sbjct: 57  TGCSKACVSAIFEIEKKSTLDALIQMGISLEDNFLLVSREVYSSGKNICRVNNQFVLLST 116

Query: 107 -DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE-- 163
              + + + E++       L     ++         RF  + +  +   ++    D++  
Sbjct: 117 LREITKHIFEIHGQNETHLLNDKRIQLLYID-----RFCGKELEELKAEYKDLYRDYQEK 171

Query: 164 -RLMRG-------RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
            RL          R R L    +  +   S+  Q+AE        R E+I   +S  +++
Sbjct: 172 KRLYEQIITKEEERERQLDLLNYQINEIESVNPQIAEDTE--LEKRKEIIQ--NSWKLKH 227

Query: 216 VQKENFPHIKLSLTGFLD---------GKFDQSFCALKEEYAKKLFDGRKM--DSMSRRT 264
             ++    I  ++   L+          +FD+ F A+ E      ++   +      +  
Sbjct: 228 NSEKMLDTINNTIIDSLEMCIRLANENSRFDKEFEAISERLNNVYYEIEDISFSISKKSQ 287

Query: 265 LIGPHRSDL--IVDYCDK--AITIAHGST 289
               ++ ++  IVD  DK   +   +GST
Sbjct: 288 SYEVNKDEIEQIVDRLDKINRLKKKYGST 316


>gi|309809454|ref|ZP_07703312.1| DNA repair protein RecN [Lactobacillus iners SPIN 2503V10-D]
 gi|308170126|gb|EFO72161.1| DNA repair protein RecN [Lactobacillus iners SPIN 2503V10-D]
          Length = 559

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 81/217 (37%), Gaps = 47/217 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F    T+ +G+ G GK+ I++A+S L   R     +  D+ R
Sbjct: 2   LVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSR-----AQIDMIR 56

Query: 67  IGSPSFF--STFARVEGMEGLADISIKLETRDD------------RSVRCLQINDV--VI 110
            G         F+  +  + L D+ I+     D            +    ++IN     I
Sbjct: 57  SGESKAIITGLFSVDDTNKVLIDMCIEAGIPLDDNQLVICRELSIKGRSIVRINGQITTI 116

Query: 111 RVVDELNKHL-------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            V+  L+++L        +  L+     I           LD      +   +  +  ++
Sbjct: 117 NVLKNLSQYLVDIHGQRDMQILMDQDLHI---------NLLDNFA---NNDFKESLCQYQ 164

Query: 164 RL------MRGRNRLLTEGYFDSSWC-SSIEAQMAEL 193
           ++      ++ R   + +   + +     +E Q+ EL
Sbjct: 165 KIYAKWQEIKQRLSAIRKNAQEIAQKHDILEYQLNEL 201


>gi|297617447|ref|YP_003702606.1| SMC domain protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297145284|gb|ADI02041.1| SMC domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 536

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +K++ + I  +R+   L           +G N VGK+NIL A++ 
Sbjct: 1  MKLERVKIQNYRSIKELEFEVGD-LCALIGPNNVGKSNILSALAL 44


>gi|159487461|ref|XP_001701741.1| structural maintenance of chromosomes protein 2 [Chlamydomonas
           reinhardtii]
 gi|158280960|gb|EDP06716.1| structural maintenance of chromosomes protein 2 [Chlamydomonas
           reinhardtii]
          Length = 1165

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 18/123 (14%)

Query: 5   IKIKFLNISEFRNYA-SLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + I+ L+I  F++YA  + L  FD       G NG GK+NIL++I F+   +     R  
Sbjct: 1   MYIQQLDIDGFKSYANHVTLNNFDRSFNAITGLNGSGKSNILDSICFVLGIKKLEQVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  ++  + G          +            G E    I +  +       +   IN 
Sbjct: 61  NLQELVYKQGQAGIQRASVSITFRNDDPKTGPSGYEDKETIVVTRQIAVGGRNK-YTING 119

Query: 108 VVI 110
              
Sbjct: 120 QAA 122


>gi|193210872|ref|NP_499453.3| SMC (structural maintenance of chromosomes) family member (smc-3)
          [Caenorhabditis elegans]
 gi|154147369|emb|CAB57898.4| C. elegans protein Y47D3A.26, confirmed by transcript evidence
          [Caenorhabditis elegans]
          Length = 1205

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISF 49
          +KIK + I+ FR+Y        F  +  + VG NG GK+N   AI F
Sbjct: 1  MKIKEVRITGFRSYKDNTNVSGFSPRSNVVVGRNGSGKSNFFHAIQF 47



 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + I  +           AP  L DEI A LD   R ++  ++  +  Q  F
Sbjct: 1104 SGGQKSLVALAIIFS-----IQKCDPAPFYLFDEIDAALDAQHRKSVADMIQSLSDQAQF 1158

Query: 347  MTGT 350
            +T T
Sbjct: 1159 VTTT 1162


>gi|327490060|gb|EGF21848.1| chromosome segregation ATPase family protein [Streptococcus
           sanguinis SK1058]
          Length = 630

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF--LSPGRG-FRRASY 61
           KIK L I  F  Y   L +    +  I  G NG+GKT +L  I +  + P +G  R  +Y
Sbjct: 9   KIKRLKIDNFDLYKCPLEIDLSDKLNIIFGTNGLGKTTLLNIIRYSVIGPYKGRERVRNY 68

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLE 93
            D  +   P F   + +      L +  +++E
Sbjct: 69  KDQQKSRRPMFDRDYFKNRMQVPLNEAEVEVE 100


>gi|323705308|ref|ZP_08116883.1| DNA repair protein RecN [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535210|gb|EGB24986.1| DNA repair protein RecN [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 568

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 28/193 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  LNI          + FD    I  G+ G GK+ +++++  L  GR     +  D+ R
Sbjct: 2   ILTLNIKNIALIDEAEIDFDDGLNILTGETGAGKSIVIDSMMLLLGGR-----ANKDIIR 56

Query: 67  IGSPSFFSTFARV--------------EGMEGLADISIKLETRDDRSVRCL-QIND--VV 109
            G+         +               G+E   D ++ +      + R   ++N   V 
Sbjct: 57  NGAQKATVEGVFLVDSNTDVIHKILDEAGIEYEDDDTLVISRDITENGRNYCRVNGRIVP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           +  + +L  +L           +            F D+  F +    R  + ++  L  
Sbjct: 117 LSFLSKLGTYLVDILGQHEHQFLLDSSKHLSILDNFQDKNFFDLKGTLRDLLSEYNIL-- 174

Query: 168 GRNRLLTEGYFDS 180
             N+ L E Y D 
Sbjct: 175 --NKRLKEFYSDD 185


>gi|313678608|ref|YP_004056348.1| chromosome segregation protein SMC [Mycoplasma bovis PG45]
 gi|312950128|gb|ADR24723.1| chromosome segregation protein SMC [Mycoplasma bovis PG45]
          Length = 992

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 14/124 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+  +    F+++A  + L FD      VG NG GK+NI +AI ++   R     R  +
Sbjct: 1   MKLIKVEAHGFKSFAEPITLRFDGGVAGIVGPNGSGKSNINDAIKWVLGERSAKELRGDN 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGLAD-----ISIKLETRDDRSVRCLQINDVVI 110
             DV   GS +             +  +G +      I+I         +    +N  V 
Sbjct: 61  MDDVIFAGSKTAKPMDKAVVTLTFDNKDGQSSINHEMITISRVLERGSGINQYYLNGEVC 120

Query: 111 RVVD 114
           R  D
Sbjct: 121 RQKD 124


>gi|218245573|ref|YP_002370944.1| hypothetical protein PCC8801_0703 [Cyanothece sp. PCC 8801]
 gi|218166051|gb|ACK64788.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
          Length = 399

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          IK ++I  FR +    +    +  +  G N  GKT +LEAI
Sbjct: 2  IKDIDIENFRCFERTHIKGFERVNLIGGKNNSGKTALLEAI 42


>gi|330994665|ref|ZP_08318588.1| hypothetical protein SXCC_04553 [Gluconacetobacter sp. SXCC-1]
 gi|329758306|gb|EGG74827.1| hypothetical protein SXCC_04553 [Gluconacetobacter sp. SXCC-1]
          Length = 1511

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 63/162 (38%), Gaps = 26/162 (16%)

Query: 9   FLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYADV 64
            L I+ F+++A  + +      T  VG NG GK+N++EA+ ++   +  R  R     D+
Sbjct: 7   RLRIAGFKSFADPVSVDILPGLTGIVGPNGCGKSNVVEALRWVMGETNARSLRGGEMDDL 66

Query: 65  TRIG-----SPSFFSTFARVEGM--------EGLADISIKLETRDDRSVRCLQINDVVIR 111
              G     + +       +EG         +G  ++ +     +  +    +IN    R
Sbjct: 67  IFAGTTTRAARNMADVTLTLEGAAEVAPAPFQGQDELQV-CRRAERGAGSGYRINGRTTR 125

Query: 112 VVD------ELNKHLRISWLVPS--MDRIFSGLSMERRRFLD 145
             D      +L    R S +V    +  + +    ERR  L+
Sbjct: 126 GRDVQTLFADLASGARSSAMVSQGRVSALVNARPEERRTILE 167


>gi|325126175|gb|ADY85505.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 808

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 79/224 (35%), Gaps = 25/224 (11%)

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--------------VEMIN 206
           D  +L+  +  L  E        S+++ +MA L  +    R               E+ +
Sbjct: 586 DLSKLLGQKQELEKELADKQRAVSALQQEMANLLAE--EKRYASSSQVAEDKQTLAEIAD 643

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM--SRRT 264
           +      +Y+       +                  L ++Y + L  GR  + +  ++ +
Sbjct: 644 SFRRDSQDYLASLLAGEVIGRTLDLASNDRFPKMLKLAQDYLEILTGGRYREILLPAKLS 703

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
              P +   +V    K I +A+ S G Q+ +   + LA    I +       +L+D+   
Sbjct: 704 KKTPLK---VVRKDKKKIPLAYLSRGTQEQLYFALKLAFVMQIKDKIDLP--VLIDDSFV 758

Query: 325 HLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNETAKFMR 366
           + D  +   +  ++  +    QI +    + + ++++      R
Sbjct: 759 NFDGPRTGYIVDMLKKMSEDKQILVFTAREDLAEAVSAAPIRYR 802


>gi|295396793|ref|ZP_06806928.1| DNA repair protein RecN [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970377|gb|EFG46317.1| DNA repair protein RecN [Brevibacterium mcbrellneri ATCC 49030]
          Length = 574

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 70/200 (35%), Gaps = 18/200 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           I+ L+I       +  +      T+  G+ G GKT  + A++ L+  R      R  +  
Sbjct: 8   IESLSIHNMGVIENAHVDLGPGFTVVTGETGAGKTMFVSALNLLTGARAETQAVRSDASK 67

Query: 63  DVTR--IGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQIND---VVIRVVDEL 116
            V        S     ARVE   G   D  + +      S R         V + V+  +
Sbjct: 68  AVVEGIFSVESQPEVVARVEDAGGSVDDGELVVTRTIPTSGRARATAGGRTVPVAVLSHV 127

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLD----RMVFAIDPRHRRRMIDFERLMRGRNRL 172
            +  R+  +    +++    + ++R  LD      +  +   +     ++ + +  R R 
Sbjct: 128 GE--RLVSMHGQSEQLTLRSASKQRELLDTYGGEELAHVRDAYVNAYEEW-KCVHERARE 184

Query: 173 LTEGYFDS-SWCSSIEAQMA 191
           L     +  +    +E  +A
Sbjct: 185 LHASEKERNARIEYLEGALA 204


>gi|291618460|ref|YP_003521202.1| RecN [Pantoea ananatis LMG 20103]
 gi|291153490|gb|ADD78074.1| RecN [Pantoea ananatis LMG 20103]
          Length = 561

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 32/210 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 10  LAQLTISNFAIVRELDIDFQRGMTAITGETGAGKSIAIDALGLCLGGR-----ADADMVR 64

Query: 67  IG-----------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            G                 +  + S     +G E L    I  + R    +    +    
Sbjct: 65  QGASRADLCARFQIKASPSAQRWLSDNHLDDGNECLLRRVISADGRSRGFINGTAVPLSQ 124

Query: 110 IRVVDEL-----NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
           +R + +L      +H     L P   +             D ++  +   + +      R
Sbjct: 125 LRDLGQLLIQIHGQHAHQLLLKPDHQKHLLDAYAGH----DDLLIQMRASY-QTWHQSCR 179

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
            +    +   E             ++ E  
Sbjct: 180 TLAQHQQQAQERESRRELLQYQLKELNEFA 209


>gi|302404285|ref|XP_002999980.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261361162|gb|EEY23590.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 1125

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 95/311 (30%), Gaps = 64/311 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +  L +         VG+NG GK+ +L A++     +     R  S   
Sbjct: 127 IENVECINFMCHERLYVELGPLINFIVGENGSGKSAVLTALTLCLGAKASSTNRGGSLKS 186

Query: 64  VTRIG------------------SPSFFSTFARVEG---MEGLADISIKLETRDDRSVRC 102
             + G                   P  +    RVE      G +   +K E     S + 
Sbjct: 187 FIKEGRDQAVITVCIKNQGQDAYQPDLYGETIRVERHFSRSGTSGFRLKSERGKTISTKK 246

Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRR--FLDRMVFAIDPRH----- 155
            +I+++      +++  L +     +   + S     + +  F    +  +D  +     
Sbjct: 247 AEIDEITEYWGLQVDNPLNVLSQDNARQFLNSATPAVKYKYFFKGVQLEQLDHNYKLISE 306

Query: 156 ----------------RRRMIDFERLMR-----GRNRLLT----EGYFDSSWCSSIEAQM 190
                            +  + ++R  +       N  L           +WC  ++   
Sbjct: 307 MLDSHEEKLVKLKDDAAQLEVKYQRAKKDKQAVEANLGLRAEGQRIRTQLAWCQVVD--- 363

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
                +    +   + AL+S ++E  +  +       LT   +       C   +E   K
Sbjct: 364 ---AERGLAQQQAQLEALTSKLVEDARNID--KATGQLTTCDEKIEQLEACCGGKEAKAK 418

Query: 251 LFDGRKMDSMS 261
           L D R+ +  +
Sbjct: 419 LEDHRREEREA 429


>gi|238879829|gb|EEQ43467.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1240

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 4/107 (3%)

Query: 6   KIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           ++  L +  F++Y    ++    +  T  +G NG GK+N+++AISF+        R  + 
Sbjct: 3   RLIGLELFNFKSYKGKSIIGFGSSYFTSIIGPNGAGKSNMMDAISFVLGVNSYHLRSQNL 62

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            D+   G  +  +    ++ +E     +  + T +      L++   
Sbjct: 63  KDLIYRGRRNIDTDSTTLDAIEQDPTSAYVMATYEKDDGEILKLKRT 109


>gi|78213768|ref|YP_382547.1| condensin subunit Smc [Synechococcus sp. CC9605]
 gi|78198227|gb|ABB35992.1| chromosome segregation protein SMC [Synechococcus sp. CC9605]
          Length = 1202

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  + ++ F+++  ++ +  +   T+  G NG GK+NIL+ + F   L+  RG R   
Sbjct: 2  VHINQVGLTHFKSFGGAMTIPLEEGFTVVTGPNGSGKSNILDGVLFCLGLATSRGMRADR 61

Query: 61 YADVTRIG 68
            D+   G
Sbjct: 62 LPDLVNSG 69


>gi|212656546|ref|NP_001129842.1| SMC (structural maintenance of chromosomes) family member (smc-3)
          [Caenorhabditis elegans]
 gi|186929457|emb|CAQ48406.1| C. elegans protein Y47D3A.26b, partially confirmed by transcript
          evidence [Caenorhabditis elegans]
          Length = 1261

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISF 49
          +KIK + I+ FR+Y        F  +  + VG NG GK+N   AI F
Sbjct: 1  MKIKEVRITGFRSYKDNTNVSGFSPRSNVVVGRNGSGKSNFFHAIQF 47



 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + I  +           AP  L DEI A LD   R ++  ++  +  Q  F
Sbjct: 1160 SGGQKSLVALAIIFS-----IQKCDPAPFYLFDEIDAALDAQHRKSVADMIQSLSDQAQF 1214

Query: 347  MTGT 350
            +T T
Sbjct: 1215 VTTT 1218


>gi|86141446|ref|ZP_01059992.1| hypothetical protein MED217_05492 [Leeuwenhoekiella blandensis
          MED217]
 gi|85832005|gb|EAQ50460.1| hypothetical protein MED217_05492 [Leeuwenhoekiella blandensis
          MED217]
          Length = 626

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +  L I  +RN+ +  +      T  +G+N +GK+N+L+++  +
Sbjct: 1  MYVSQLEILNYRNFKNFTVQLKP-VTQIIGENNIGKSNLLDSLGLI 45


>gi|327443931|gb|EGE90585.1| DNA repair protein RecN [Propionibacterium acnes HL013PA2]
          Length = 559

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 110/369 (29%), Gaps = 40/369 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L   +  T   G+ G GKT ++  I  L   +     +
Sbjct: 1   MIRSVRIRGLGVID-----ETVLEPSSALTAVTGETGAGKTMVVTGIGLLLGDK-----A 50

Query: 61  YADVTRIGSPSFFS-------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              + R G                RV  + G  +    +  R   S R   +        
Sbjct: 51  DTGLVRHGCDRAVVEAVLDTPDAGRVSELGGTVEDGEVICARHITSRRSRALLGGAQVTA 110

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +L   +     +         +   R+     R     +     RH +   +F R    
Sbjct: 111 SQLAHIVGDQVTIHGQSEQVRLVDAARQLDVVDRAAGDELAGYLSRHAQLWSEF-RAASQ 169

Query: 169 RNRLLTEGYFDSSW-CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIK 225
           R + L E    +      +  ++ E+           ++I  ++ L      +E+     
Sbjct: 170 RLQRLNEDRAGAEMEREVLTRRVGEVDAVDPKPHEDDDLIAEMAGLQAAQSIRESLNKAD 229

Query: 226 LSLTGFLDGKFDQSFC-ALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           + L G       Q    AL E+   +L      D    +   R   +    +DL      
Sbjct: 230 VLLNGVETSTGPQPGALALLEQAVHELDGTGDADPHAAELAERARQMSYDLTDLAASVAG 289

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FR 336
            A          Q++  +G  LA  + +          LLD  +A  D  +   L     
Sbjct: 290 HAARAEAD---PQRLEELGGRLAAIQRLLRARTTTLDDLLDSTAA--DRHRLAELDPGAT 344

Query: 337 IVTDIGSQI 345
            +  +G Q+
Sbjct: 345 DLDFLGQQV 353


>gi|327330010|gb|EGE71764.1| DNA repair protein RecN [Propionibacterium acnes HL097PA1]
          Length = 559

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 110/369 (29%), Gaps = 40/369 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L   +  T   G+ G GKT ++  I  L   +     +
Sbjct: 1   MIRSVRIRGLGVID-----ETVLEPSSALTAVTGETGAGKTMVVTGIGLLLGDK-----A 50

Query: 61  YADVTRIGSPSFFS-------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              + R G                RV  + G  +    +  R   S R   +        
Sbjct: 51  DTGLVRHGCDRAVVEAVLDTPDAGRVSELGGTVEDGEVICARHITSRRSRALLGGAQVTA 110

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +L   +     +         +   R+     R     +     RH +   +F R    
Sbjct: 111 SQLAHIVGDQVTIHGQSEQVRLVDAARQLDVVDRAAGDELAGYLSRHAQLWSEF-RAASQ 169

Query: 169 RNRLLTEGYFDSSW-CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIK 225
           R + L E    +      +  ++ E+           ++I  ++ L      +E+     
Sbjct: 170 RLQRLNEDRAGAEMEREVLTRRVGEVDAVDPKPHEDDDLIAEMAGLQAAQSIRESLNKAD 229

Query: 226 LSLTGFLDGKFDQSFC-ALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           + L G       Q    AL E+   +L      D    +   R   +    +DL      
Sbjct: 230 VLLNGVETSTGPQPGALALLEQAVHELDGTGDADPHAAELAERARQMSYDLTDLAASVAG 289

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FR 336
            A          Q++  +G  LA  + +          LLD  +A  D  +   L     
Sbjct: 290 HAARAEAD---PQRLEELGGRLAAIQRLLRARTTTLDDLLDSTAA--DRHRLAELDPGAT 344

Query: 337 IVTDIGSQI 345
            +  +G Q+
Sbjct: 345 DLDFLGQQV 353


>gi|315047706|ref|XP_003173228.1| hypothetical protein MGYG_09099 [Arthroderma gypseum CBS 118893]
 gi|311343614|gb|EFR02817.1| hypothetical protein MGYG_09099 [Arthroderma gypseum CBS 118893]
          Length = 1130

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ ++   F  +    +         VG NG GK+ IL A++    G+     R  S   
Sbjct: 89  IERVDCYNFMCHEHFSVELGPLINFIVGKNGSGKSAILTALTLCLGGKASATNRGQSLKS 148

Query: 64  VTRIGSPSFFSTFARVEGM 82
             + G  S  +   R++  
Sbjct: 149 FVKEGKESA-TIIVRIKNQ 166


>gi|260592340|ref|ZP_05857798.1| DNA repair protein RecN [Prevotella veroralis F0319]
 gi|260535727|gb|EEX18344.1| DNA repair protein RecN [Prevotella veroralis F0319]
          Length = 555

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 67/225 (29%), Gaps = 24/225 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  F     L + F +  ++  G+ G GK+ IL AI  L   R     + +   +
Sbjct: 2   LKHLYIKNFTLIDQLDIAFHSGFSVITGETGAGKSIILGAIGLLLGNR-----ADSKQIK 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G                F S F   +      D  I+ E       R   IND  + + 
Sbjct: 57  QGEKKCTIEAHFDLSHYGFESFFEDNDIDFEPEDTIIRRELTASGKSRAF-INDTPVSLQ 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDFERLMRGRNR 171
                  ++  +      +       +   +D +    A    +      ++  +  R  
Sbjct: 116 MMRILGEQLIDIHSQHQNLLLQKDDFQLNVVDIIAQDSAALSAYHSSYQHYKESL-QRLS 174

Query: 172 LLTEGYFDSSWCSSIEA-QMAEL-GVKINIARVEMINALSSLIME 214
            L E    +         Q  EL    +   R + +   S  +  
Sbjct: 175 DLKEQITKAQENEEFMRFQFDELESAGLVEGRQQELEQESETLSH 219


>gi|257094261|ref|YP_003167902.1| SMC domain-containing protein [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257046785|gb|ACV35973.1| SMC domain protein [Candidatus Accumulibacter phosphatis clade
          IIA str. UW-1]
          Length = 401

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          M + + +  + +  +++     +  +   T  VG NG GK+N L+A+  
Sbjct: 1  MIDPVFLTRVVLRNYKSIGYCDVRLNP-LTYLVGANGSGKSNFLDALHL 48


>gi|308799805|ref|XP_003074683.1| structural maintenance of chromosomes (ISS) [Ostreococcus tauri]
 gi|116000854|emb|CAL50534.1| structural maintenance of chromosomes (ISS) [Ostreococcus tauri]
          Length = 1075

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRAS 60
           ++++   +  F  +  +      +  + VG NGVGK+  + A+     G       R  S
Sbjct: 36  MRVR---MKNFMTHGDVTFEPGPRLNVVVGPNGVGKSAFVCAVCV-GLGGSTKLLGRAGS 91

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
             D  + G+ S ++         G   +  +     D      ++N V ++
Sbjct: 92  IQDFVKRGTESAWTEITLRGREVGKPIVIRRDFKNRDGGASRWKMNGVEVK 142


>gi|157114659|ref|XP_001652359.1| structural maintenance of chromosomes smc3 [Aedes aegypti]
 gi|108877178|gb|EAT41403.1| structural maintenance of chromosomes smc3 [Aedes aegypti]
          Length = 1201

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 9/122 (7%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MHIKQVIIQGFKSYREQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                       +  A VE +   +D  + ++  +      + +  V+    D+   + +
Sbjct: 61  RQALLHEGTGARAMSAYVEIIFDNSDNRVPIDKEE------IFLRRVIGAKKDQYFLNKK 114

Query: 122 IS 123
           + 
Sbjct: 115 VV 116



 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQI 345
            S G++ +V + +  A           AP  L DEI   LD   R A+  ++ ++   +Q 
Sbjct: 1100 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVADMIHELSDKAQ- 1153

Query: 346  FMTGTDKSVFDSLNETAKFMRI 367
            F+T T     + L    KF  +
Sbjct: 1154 FITTT--FRPELLENAHKFYGV 1173


>gi|34849448|gb|AAP58947.1| chromosome segregation ATPase [Spiroplasma kunkelii CR2-3x]
          Length = 988

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 65/184 (35%), Gaps = 28/184 (15%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGFRRASYA 62
           +K +    F+++A  L + FD +    VG NG GK+NI +AI +       +  R  +  
Sbjct: 4   LKKIEAFGFKSFADPLIVNFDHEMIGIVGPNGSGKSNINDAIRWCLGEQSIKSLRGNNSE 63

Query: 63  DVTRIGSPS-----------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
           DV   GS +            F+   R+  M+   +I I              IN   +R
Sbjct: 64  DVIFNGSETKPGLNIAEVKLIFNNTNRIFAMDYD-EIEIIRRVFRGNGENEYFINKQRVR 122

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDR--MVFAIDPRHRRRMI 160
            + ++      S L  S   I S            +ERR   +    V     R    + 
Sbjct: 123 -LKDIQDFAMDSGLTKSSLAIISQGNINAFAEAKPLERRALFEEAAGVAKYKRRKLEALK 181

Query: 161 DFER 164
             +R
Sbjct: 182 KLDR 185


>gi|297161637|gb|ADI11349.1| putative recombination and DNA repair protein [Streptomyces
           bingchenggensis BCW-1]
          Length = 583

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/366 (15%), Positives = 113/366 (30%), Gaps = 72/366 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     + A +
Sbjct: 9   MRIRALGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADAAL 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLE-----------------TRDDRSVRCLQIND 107
            RIG+ +      R+  ++G + ++++ E                 + + RS   +    
Sbjct: 59  VRIGAKAA-VVEGRI-TVDGRSAVAVRAEEAGAELDDGALLISRTVSAEGRSRAHVGGRS 116

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           V + ++ EL   L           +       +R+ LD        R+    +       
Sbjct: 117 VPVGLLGELADDLVAVHGQTDQQGLLR--PARQRQALD--------RYAGAAVA------ 160

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                L +         ++ A++ EL  +    R +  + L   + E    E  P     
Sbjct: 161 ---GPLEKYGAAYRRLRAVAAELDELTTR-ARERAQEADLLRFGLEEIAAAEPLPGEDTE 216

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM---SRRTLIGPHRSDLIVDYCDKAITI 284
           L    +        A     A     G   D     +   + G HR+   V   D     
Sbjct: 217 LAAEAERLGHAEALASAATAAHAALAGHPEDPEGVDAASLVAGAHRALEGVRSHDP---- 272

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK------RNALFRIV 338
                   K+  +   +A   ++ +          D++ A  D  +      R A    +
Sbjct: 273 --------KLAALADRIAEVGILMSDVAGELAGYADDLDA--DPRRLAVVEERRAALSHL 322

Query: 339 TDIGSQ 344
           T    Q
Sbjct: 323 TRKYGQ 328


>gi|239986195|ref|ZP_04706859.1| putative exonuclease [Streptomyces roseosporus NRRL 11379]
          Length = 508

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 96/271 (35%), Gaps = 29/271 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDA----QHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           +++  L+I+ F  +  +  + FDA       +  G  G GKT++L+A+ F   G   G R
Sbjct: 1   MRLHRLSITAFGPFGTTQEVDFDALSSAGLFLLHGPTGAGKTSVLDAVCFALYGAVPGAR 60

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-RVVDEL 116
           ++  A +    +P    T  ++E   G   + +       R  +  + +   + +    L
Sbjct: 61  QSPGASLRSDHAPVDLPTEVQLELTVGGRRLEVTRSPAQPRPKK--RGDGFTVEKAQSRL 118

Query: 117 NKHLR---ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR----GR 169
             +        L  S   I      E  + +                DF R +R     R
Sbjct: 119 RGYDPERGWHALSKSHQEI----GEELTQLIGMSRDQFCQVVLLPQGDFARFLRSDAEAR 174

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---GVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            +LL    FD+   +++E ++AEL         A  E I AL+  I +           +
Sbjct: 175 GKLLGRL-FDTRRFAAVEERLAELRRGAEAKVTAADERILALAQRIAQAAGPAGAEATPI 233

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
           +      G  +    A+ E  A      R+ 
Sbjct: 234 AARPGEPGLAE----AVLEWAAIARSTARER 260


>gi|215483865|ref|YP_002326090.1| Overcoming lysogenization defect protein [Acinetobacter baumannii
          AB307-0294]
 gi|213988023|gb|ACJ58322.1| Overcoming lysogenization defect protein [Acinetobacter baumannii
          AB307-0294]
          Length = 568

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ----HTIFVGDNGVGKTNIL 44
          + I  + +  FR      L  D       T+ VG N  GKT+ +
Sbjct: 1  MHISSIKVKNFRAIKDAELKLDPNQKQDLTLIVGKNNSGKTSFI 44


>gi|167763836|ref|ZP_02435963.1| hypothetical protein BACSTE_02216 [Bacteroides stercoris ATCC
          43183]
 gi|167697952|gb|EDS14531.1| hypothetical protein BACSTE_02216 [Bacteroides stercoris ATCC
          43183]
          Length = 653

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          K+K L++  F+   SL + F    T+  G+NG GKT + ++  +L  G+     S ++
Sbjct: 5  KLKSLSLVNFKGIRSLNIGFSDAETLVAGENGTGKTTVFDSFLWLLFGKDSTGRSDSN 62


>gi|325920213|ref|ZP_08182168.1| DNA replication and repair protein RecN [Xanthomonas gardneri
          ATCC 19865]
 gi|325549299|gb|EGD20198.1| DNA replication and repair protein RecN [Xanthomonas gardneri
          ATCC 19865]
          Length = 554

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2  LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67 IGSPSF 72
           G+   
Sbjct: 57 HGADRA 62


>gi|320011587|gb|ADW06437.1| DNA repair protein RecN [Streptomyces flavogriseus ATCC 33331]
          Length = 581

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 67/210 (31%), Gaps = 31/210 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +   +
Sbjct: 7   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADPAL 56

Query: 65  TRIGSPSFFS-----------TFARVEGMEGLADISIKLETR----DDRSVRCLQINDVV 109
            RIG+ +                 R E   G  +    L +R    + RS   L    V 
Sbjct: 57  VRIGAKAAVVEGRITVSPGDAAAVRAEEAGGEVEDGALLVSRTVSAEGRSRAHLGGRSVP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA-ID---PRHRRRMIDFERL 165
           + V+ EL   L           +       +R+ LDR   A +D     +         +
Sbjct: 117 VGVLAELADELVAVHGQTDQQGLLK--PARQRQALDRYAGAGVDGPLTTYAAAYRRLRAV 174

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
           +   + L       +     +   + E+  
Sbjct: 175 VTELDELTVRARERAQEADLLRFGLDEVAA 204



 Score = 37.2 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 26/147 (17%)

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            ++  +++ LG ++  AR E  +  ++ + E +     PH ++S         D++    
Sbjct: 360 DALRGELSVLGQQLTDARTEAADRFAAAVTEELASLAMPHARVSFAIGQSEAPDEASG-- 417

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD-LIVDYCDKA-----ITIAHGSTGEQKVVLV 297
                        +D   R  L GP  +D + +                 S GE   V++
Sbjct: 418 -------------IDIGGRSVLYGPSGADEVELLLAPHPGAQPRPIAKGASGGELSRVML 464

Query: 298 GIFLAHARLISNTTGFAPILLLDEISA 324
                   ++   +   P  L DE+ A
Sbjct: 465 A-----VEVVFAGSDPVPTYLFDEVDA 486


>gi|254459768|ref|ZP_05073184.1| chromosome segregation protein SMC [Rhodobacterales bacterium
           HTCC2083]
 gi|206676357|gb|EDZ40844.1| chromosome segregation protein SMC [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 1151

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 78/224 (34%), Gaps = 30/224 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L +  F+++     L+     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFSKLKLQGFKSFVDPTDLIIADGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDRSV-RCLQINDV 108
             DV   G+      +F     +++  E LA         + +  R  R V    + N  
Sbjct: 61  MEDVIFAGAATRPARNFAEVSLQIDNSERLAPAGFNDLDTLDVVRRITRDVGSAYKTNGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D   L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQIAELINAKPKNRRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDS--SWCSSIEAQMAELGVKINIARV 202
             E  ++ +         D      +S  +Q+A    + +  R 
Sbjct: 177 RHEAELKLKGAETNLARVDDVIEQLASQLSQLARQARQASRYRA 220


>gi|257058618|ref|YP_003136506.1| hypothetical protein Cyan8802_0732 [Cyanothece sp. PCC 8802]
 gi|256588784|gb|ACU99670.1| conserved hypothetical protein [Cyanothece sp. PCC 8802]
          Length = 399

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          IK ++I  FR +    +    +  +  G N  GKT +LEAI
Sbjct: 2  IKDIDIENFRCFERTHIKGFERVNLIGGKNNSGKTALLEAI 42


>gi|108804223|ref|YP_644160.1| SMC protein-like protein [Rubrobacter xylanophilus DSM 9941]
 gi|108765466|gb|ABG04348.1| SMC protein-like protein [Rubrobacter xylanophilus DSM 9941]
          Length = 1091

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 85/262 (32%), Gaps = 30/262 (11%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62
           +  + I  F+ +A  +R+  +   T  VG NG GK+NI +A+ F    +     R    +
Sbjct: 2   LSAIYIKGFKTFARPVRMPLEPGVTAIVGPNGSGKSNITDAVLFALGEQSPGVLRAGGMS 61

Query: 63  DVTRIGSPS-----FFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIRVV 113
           D+   GS S            ++   G   +    + +  R  R  R   ++     R+ 
Sbjct: 62  DLIFAGSESLPAANAAEVTLVLDNSGGEISLPYGEVAISRRISRDGRTEYRVGGARARLA 121

Query: 114 D------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           D      E            ++D I +G +   R+ L+             +  + R   
Sbjct: 122 DVRVVAGEAGLGRHSILRQGAVDAIVAGGAAACRQALEESAG---------LGVYRRRRL 172

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
              R L +          +EA +AE   +I   R          +    ++ +   +   
Sbjct: 173 AAARRLEKAAGQLERTRQLEASLAEQLRRI--EREAGAAREYRRLESRYRELSLARLHRE 230

Query: 228 LTGFLDGKFDQSFCALKEEYAK 249
            +G    +  +     +    +
Sbjct: 231 ASGGAQDRLRRRLEEAEARIRE 252


>gi|91787197|ref|YP_548149.1| DNA repair protein RecN [Polaromonas sp. JS666]
 gi|91696422|gb|ABE43251.1| DNA replication and repair protein RecN [Polaromonas sp. JS666]
          Length = 547

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K +++ +F    +L L      T+  G+ G GK+ +++A+  L+ G      + A V
Sbjct: 1   MSLKSISLRDFVIVHALDLDLSDGFTVLTGETGAGKSILIDALQ-LALG----SRADAGV 55

Query: 65  TRIGS---------PSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI 110
            R G+          S  S    +E     AD S+ L    D   +    IN    
Sbjct: 56  VREGAARCEISAEFDSPASLAPWLEQAGFQADGSLLLRRTIDSQGKSRAWINGSAA 111


>gi|258515868|ref|YP_003192090.1| putative ATP-binding protein [Desulfotomaculum acetoxidans DSM 771]
 gi|257779573|gb|ACV63467.1| putative ATP-binding protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 355

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L + +F  + SL + F     I  G+N  GKT IL+ +  ++        + +++
Sbjct: 1   MYISKLFLKDFMLFNSLNIDFSKNINIISGENSTGKTAILKLLYSVTKSISEANKAKSEL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQI 105
           T+  + +   +  +++G+    D  I  L TR     R   +
Sbjct: 61  TKEQNENLLVS--KLQGVFRPDDDKIGRLVTRIQGRNRSDIV 100


>gi|295130931|ref|YP_003581594.1| DNA repair protein RecN [Propionibacterium acnes SK137]
 gi|291376442|gb|ADE00297.1| DNA repair protein RecN [Propionibacterium acnes SK137]
 gi|313771924|gb|EFS37890.1| DNA repair protein RecN [Propionibacterium acnes HL074PA1]
 gi|313809649|gb|EFS47385.1| DNA repair protein RecN [Propionibacterium acnes HL083PA1]
 gi|313829969|gb|EFS67683.1| DNA repair protein RecN [Propionibacterium acnes HL007PA1]
 gi|313833027|gb|EFS70741.1| DNA repair protein RecN [Propionibacterium acnes HL056PA1]
 gi|314972865|gb|EFT16962.1| DNA repair protein RecN [Propionibacterium acnes HL053PA1]
 gi|314975712|gb|EFT19807.1| DNA repair protein RecN [Propionibacterium acnes HL045PA1]
 gi|314984104|gb|EFT28196.1| DNA repair protein RecN [Propionibacterium acnes HL005PA1]
 gi|315095706|gb|EFT67682.1| DNA repair protein RecN [Propionibacterium acnes HL038PA1]
 gi|327330030|gb|EGE71783.1| DNA repair protein RecN [Propionibacterium acnes HL096PA2]
 gi|327442739|gb|EGE89393.1| DNA repair protein RecN [Propionibacterium acnes HL043PA1]
 gi|327443863|gb|EGE90517.1| DNA repair protein RecN [Propionibacterium acnes HL043PA2]
 gi|328761450|gb|EGF74976.1| DNA repair protein RecN [Propionibacterium acnes HL099PA1]
          Length = 559

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 110/369 (29%), Gaps = 40/369 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L   +  T   G+ G GKT ++  I  L   +     +
Sbjct: 1   MIRSVRIRGLGVID-----ETVLEPSSALTAVTGETGAGKTMVVTGIGLLLGDK-----A 50

Query: 61  YADVTRIGSPSFFS-------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              + R G                RV  + G  +    +  R   S R   +        
Sbjct: 51  DTGLVRHGCDRAVVEAVLNTPDAGRVSELGGTVEDGEVICARHITSRRSRALLGGAQVTA 110

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +L   +     +         +   R+     R     +     RH +   +F R    
Sbjct: 111 SQLAHIVGDQVTIHGQSEQVRLVDAARQLDVVDRAAGDELAGYLSRHAQLWSEF-RAASQ 169

Query: 169 RNRLLTEGYFDSSW-CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIK 225
           R + L E    +      +  ++ E+           ++I  ++ L      +E+     
Sbjct: 170 RLQRLNEDRAGAEMEREVLTRRVGEVDAVDPKPHEDDDLIAEMAGLQAAQSIRESLNKAD 229

Query: 226 LSLTGFLDGKFDQSFC-ALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           + L G       Q    AL E+   +L      D    +   R   +    +DL      
Sbjct: 230 VLLNGVETSTGPQPGALALLEQAVHELDGTGDADPHAAELAERARQMSYDLTDLAASVAG 289

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FR 336
            A          Q++  +G  LA  + +          LLD  +A  D  +   L     
Sbjct: 290 HAARAEAD---PQRLEELGGRLAAIQRLLRARTTTLDDLLDSTAA--DRHRLAELDPGAT 344

Query: 337 IVTDIGSQI 345
            +  +G Q+
Sbjct: 345 DLDFLGQQV 353


>gi|146276201|ref|YP_001166360.1| chromosome segregation protein SMC [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554442|gb|ABP69055.1| chromosome segregation protein SMC [Rhodobacter sphaeroides ATCC
           17025]
          Length = 1170

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 41/237 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R A 
Sbjct: 20  LRFTRLRLNGFKSFVDPTDLVIHDGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGAG 79

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G+      +F      ++  + LA         I++  R  R +    + N  
Sbjct: 80  MEDVIFAGAATRPARNFAEVALVLDNADRLAPSGFNDADTIEIVRRITRDAGSAYKANSK 139

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR-----MVFAIDPRH 155
            +R  D   L          P++ R      + +     RRR L+       ++      
Sbjct: 140 DVRARDIQMLFADASTGAHSPALVRQGQISELINAKPRARRRILEEAAGISGLYQRRHEA 199

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSS 210
             R+   E+ +                   +  Q+A L    +      E+   L  
Sbjct: 200 ELRLAATEQNL----------ARVEDVLDQLAQQLATLARQARQAARYREIGEELRR 246


>gi|322820745|gb|EFZ27274.1| structural maintenance of chromosome (SMC), putative [Trypanosoma
           cruzi]
          Length = 1289

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
             +++K + I  F++YA  +             G NG GK+NI +A+ F+      +R  
Sbjct: 116 GEMRVKSIVIDGFKSYAHRKALEDLSPHFNAITGLNGSGKSNIFDAVCFVMGITNLKRVR 175

Query: 61  Y---ADVT-RIGSPSFFSTFARVE 80
                ++  R G+    +    +E
Sbjct: 176 AEDPRELIFRAGTTGVHAARVTIE 199


>gi|260434986|ref|ZP_05788956.1| chromosome segregation protein SMC [Synechococcus sp. WH 8109]
 gi|260412860|gb|EEX06156.1| chromosome segregation protein SMC [Synechococcus sp. WH 8109]
          Length = 1202

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  + ++ F+++  ++ +  +   T+  G NG GK+NIL+ + F   L+  RG R   
Sbjct: 2  VHINQVGLTHFKSFGGAMTIPLEEGFTVVTGPNGSGKSNILDGVLFCLGLATSRGMRAER 61

Query: 61 YADVTRIG 68
            D+   G
Sbjct: 62 LPDLVNSG 69


>gi|253682322|ref|ZP_04863119.1| DNA repair protein RecN [Clostridium botulinum D str. 1873]
 gi|253562034|gb|EES91486.1| DNA repair protein RecN [Clostridium botulinum D str. 1873]
          Length = 564

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  F     L + F+    +  G+ G GK+ +++AI+++  G+ F       + R
Sbjct: 2  LLQLNIKNFALIEELTINFEKGFNVLTGETGAGKSILIDAINYVLGGK-F----NKGLIR 56

Query: 67 IGSPSFFS 74
           G    F 
Sbjct: 57 TGENRTFV 64


>gi|229548925|ref|ZP_04437650.1| DNA repair protein RecN [Enterococcus faecalis ATCC 29200]
 gi|293382534|ref|ZP_06628468.1| DNA repair protein RecN [Enterococcus faecalis R712]
 gi|293387866|ref|ZP_06632405.1| DNA repair protein RecN [Enterococcus faecalis S613]
 gi|312906863|ref|ZP_07765860.1| DNA repair protein RecN [Enterococcus faecalis DAPTO 512]
 gi|312952743|ref|ZP_07771605.1| DNA repair protein RecN [Enterococcus faecalis TX0102]
 gi|312978882|ref|ZP_07790608.1| DNA repair protein RecN [Enterococcus faecalis DAPTO 516]
 gi|229305946|gb|EEN71942.1| DNA repair protein RecN [Enterococcus faecalis ATCC 29200]
 gi|291080082|gb|EFE17446.1| DNA repair protein RecN [Enterococcus faecalis R712]
 gi|291082713|gb|EFE19676.1| DNA repair protein RecN [Enterococcus faecalis S613]
 gi|310627117|gb|EFQ10400.1| DNA repair protein RecN [Enterococcus faecalis DAPTO 512]
 gi|310629259|gb|EFQ12542.1| DNA repair protein RecN [Enterococcus faecalis TX0102]
 gi|311288319|gb|EFQ66875.1| DNA repair protein RecN [Enterococcus faecalis DAPTO 516]
 gi|315153061|gb|EFT97077.1| DNA repair protein RecN [Enterococcus faecalis TX0031]
 gi|315156834|gb|EFU00851.1| DNA repair protein RecN [Enterococcus faecalis TX0043]
 gi|315171922|gb|EFU15939.1| DNA repair protein RecN [Enterococcus faecalis TX1342]
 gi|315173301|gb|EFU17318.1| DNA repair protein RecN [Enterococcus faecalis TX1346]
          Length = 557

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 32/262 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + + A+  ++ +   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
              +L G  D   D+   ++ E
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE 254


>gi|242001020|ref|XP_002435153.1| SMC protein, putative [Ixodes scapularis]
 gi|215498483|gb|EEC07977.1| SMC protein, putative [Ixodes scapularis]
          Length = 188

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 11/89 (12%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQI 345
           S G++ VV +   LA           AP  L DE+ +HLD ++R AL +++ ++   SQ 
Sbjct: 85  SGGQKSVVALSFILAL-----QKADPAPFYLFDEVDSHLDREQREALAQVLEELSDSSQF 139

Query: 346 FMTGTDKSVFDSLNETAKFMRISNHQALC 374
             +         L +      +++ Q   
Sbjct: 140 ICSTFSPE----LAQKGTVFYVTHKQGAS 164


>gi|257058807|ref|YP_003136695.1| ATPase AAA [Cyanothece sp. PCC 8802]
 gi|256588973|gb|ACU99859.1| AAA ATPase [Cyanothece sp. PCC 8802]
          Length = 382

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          M N+ ++  L+I  FR    L L    Q  +FVG N  GKT++LEAIS        R
Sbjct: 1  MENQ-QLDSLHIHSFRGIQDLELKDLGQINLFVGVNNCGKTSVLEAISLYCNPLNLR 56


>gi|50842876|ref|YP_056103.1| DNA repair protein RecN [Propionibacterium acnes KPA171202]
 gi|289428194|ref|ZP_06429890.1| DNA repair protein RecN [Propionibacterium acnes J165]
 gi|50840478|gb|AAT83145.1| DNA repair protein RecN [Propionibacterium acnes KPA171202]
 gi|289158575|gb|EFD06782.1| DNA repair protein RecN [Propionibacterium acnes J165]
 gi|313807157|gb|EFS45652.1| DNA repair protein RecN [Propionibacterium acnes HL087PA2]
 gi|313813276|gb|EFS50990.1| DNA repair protein RecN [Propionibacterium acnes HL025PA1]
 gi|313819353|gb|EFS57067.1| DNA repair protein RecN [Propionibacterium acnes HL046PA2]
 gi|313820002|gb|EFS57716.1| DNA repair protein RecN [Propionibacterium acnes HL036PA1]
 gi|313823206|gb|EFS60920.1| DNA repair protein RecN [Propionibacterium acnes HL036PA2]
 gi|313825006|gb|EFS62720.1| DNA repair protein RecN [Propionibacterium acnes HL063PA1]
 gi|314924841|gb|EFS88672.1| DNA repair protein RecN [Propionibacterium acnes HL036PA3]
 gi|314960602|gb|EFT04704.1| DNA repair protein RecN [Propionibacterium acnes HL002PA2]
 gi|314978098|gb|EFT22192.1| DNA repair protein RecN [Propionibacterium acnes HL072PA2]
 gi|314986259|gb|EFT30351.1| DNA repair protein RecN [Propionibacterium acnes HL005PA2]
 gi|314989527|gb|EFT33618.1| DNA repair protein RecN [Propionibacterium acnes HL005PA3]
 gi|315080900|gb|EFT52876.1| DNA repair protein RecN [Propionibacterium acnes HL078PA1]
 gi|315084823|gb|EFT56799.1| DNA repair protein RecN [Propionibacterium acnes HL027PA2]
 gi|315085996|gb|EFT57972.1| DNA repair protein RecN [Propionibacterium acnes HL002PA3]
 gi|315088285|gb|EFT60261.1| DNA repair protein RecN [Propionibacterium acnes HL072PA1]
 gi|315105947|gb|EFT77923.1| DNA repair protein RecN [Propionibacterium acnes HL030PA1]
 gi|327327891|gb|EGE69665.1| DNA repair protein RecN [Propionibacterium acnes HL096PA3]
 gi|328755020|gb|EGF68636.1| DNA repair protein RecN [Propionibacterium acnes HL020PA1]
 gi|332675812|gb|AEE72628.1| DNA repair protein RecN [Propionibacterium acnes 266]
          Length = 559

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 110/369 (29%), Gaps = 40/369 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L   +  T   G+ G GKT ++  I  L   +     +
Sbjct: 1   MIRSVRIRGLGVID-----ETVLEPSSALTAVTGETGAGKTMVVTGIGLLLGDK-----A 50

Query: 61  YADVTRIGSPSFFS-------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              + R G                RV  + G  +    +  R   S R   +        
Sbjct: 51  DTGLVRHGCDRAVVEAVLDTPDAGRVSELGGTVEDGEVICARHITSRRSRALLGGAQVTA 110

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +L   +     +         +   R+     R     +     RH +   +F R    
Sbjct: 111 SQLAHIVGDQVTIHGQSEQVRLVDAARQLDVVDRAAGDELAGYLSRHAQLWSEF-RAASQ 169

Query: 169 RNRLLTEGYFDSSW-CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIK 225
           R + L E    +      +  ++ E+           ++I  ++ L      +E+     
Sbjct: 170 RLQRLNEDRAGAEMEREVLTRRVGEVDAVDPKPHEDDDLIAEMAGLQAAQSIRESLNKAD 229

Query: 226 LSLTGFLDGKFDQSFC-ALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           + L G       Q    AL E+   +L      D    +   R   +    +DL      
Sbjct: 230 VLLNGVETSTGPQPGALALLEQAVHELDGTGDADPHAAELAERARQMSYDLTDLAASVAG 289

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FR 336
            A          Q++  +G  LA  + +          LLD  +A  D  +   L     
Sbjct: 290 HAARAEAD---PQRLEELGGRLAAIQRLLRARTTTLDDLLDSTAA--DRHRLAELDPGAT 344

Query: 337 IVTDIGSQI 345
            +  +G Q+
Sbjct: 345 DLDFLGQQV 353


>gi|327394856|dbj|BAK12278.1| DNA repair protein RecN [Pantoea ananatis AJ13355]
          Length = 553

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 62/210 (29%), Gaps = 32/210 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELDIDFQRGMTAITGETGAGKSIAIDALGLCLGGR-----ADADMVR 56

Query: 67  IG-----------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            G                 +  + S     +G E L    I  + R    +    +    
Sbjct: 57  QGASRADLCARFQIKASPSAQRWLSDNHLDDGNECLLRRVISADGRSRGFINGTAVPLSQ 116

Query: 110 IRVVDEL-----NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
           +R + +L      +H     L P   +             D ++  +   + +      R
Sbjct: 117 LRDLGQLLIQIHGQHAHQLLLKPDHQKHLLDAYAGH----DDLLIQMRASY-QTWHQSCR 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
            +    +   E             ++ E  
Sbjct: 172 TLAQHQQQAQERESRRELLQYQLKELNEFA 201


>gi|298480017|ref|ZP_06998216.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|298273826|gb|EFI15388.1| conserved hypothetical protein [Bacteroides sp. D22]
          Length = 653

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          K+K L++  F+   SL + F    T+  G+NG GKT + ++  +L  G+     S ++
Sbjct: 5  KLKSLSLVNFKGIRSLNIGFSDAETLVAGENGTGKTTVFDSFLWLLFGKDSTGRSDSN 62


>gi|154332493|ref|XP_001562063.1| structural maintenance of chromosome 3 protein [Leishmania
          braziliensis MHOM/BR/75/M2904]
 gi|134059511|emb|CAM37089.1| putative adaptor complex protein (AP) 3 delta subunit 1
          [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1198

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + IS FR+Y          ++  + VG NG GK+N   A+ F
Sbjct: 1  MFIKNIIISGFRSYREQSFPDGLSSKVNVLVGKNGSGKSNFFAAVQF 47



 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 107/310 (34%), Gaps = 27/310 (8%)

Query: 59   ASYADVTRIGSPSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQINDVVIRVVDELN 117
            +   D+ + G        ++++ +      +++ L+ R D + R      ++++  DE  
Sbjct: 878  SIDRDLEQEGRER-ERLQSQLDALTSKRLGTVRSLQERKDVADRTEMQRSLLVQRRDEAL 936

Query: 118  KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
            + +R   ++P     F   S+ +   L   + A++ + +       + +     LL    
Sbjct: 937  QKIRQLGVLPQGVAKFESASLGK---LMYHLKAVNEQLKGLSHVNRKALDQHAALLETMK 993

Query: 178  FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
              +S   ++  ++  + V        ++  L S   E +++     ++            
Sbjct: 994  ELTSQKETLTKELDSIHV--------LMEHLDSKKEEAIERTYK-QVQYQFEEVFKQLVG 1044

Query: 238  QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
               C+ + +        +K D  +        R  +     +    +   S G++ +V +
Sbjct: 1045 VESCSAELQLVAPAVSNKKEDPYTG------ARIKVSFGLGNPVSHLDQLSGGQKSLVAL 1098

Query: 298  GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGTDKSVF 355
             +  A           AP  L DEI A LD + R ++ +++       Q  +      + 
Sbjct: 1099 ALIFA-----IQRCDPAPFYLFDEIDAALDAEYRTSVAKMMARQSDECQFIVATFKTELL 1153

Query: 356  DSLNETAKFM 365
            D  ++     
Sbjct: 1154 DVADKVLGIF 1163


>gi|14521002|ref|NP_126477.1| hypothetical protein PAB0539 [Pyrococcus abyssi GE5]
 gi|5458219|emb|CAB49708.1| Hypothetical protein [Pyrococcus abyssi GE5]
          Length = 312

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I+  +I  F++  +L L    +  +F+G+  VGK+N+LEAI  LS   G      +D  R
Sbjct: 2  IRNFHIENFKSIGNLNLKC-RRINVFIGEPNVGKSNVLEAIGLLSYL-GH-VGDISDFIR 58

Query: 67 IGSPS 71
            + S
Sbjct: 59 FENIS 63


>gi|329117151|ref|ZP_08245868.1| DNA repair protein RecN [Streptococcus parauberis NCFD 2020]
 gi|326907556|gb|EGE54470.1| DNA repair protein RecN [Streptococcus parauberis NCFD 2020]
          Length = 553

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 78/215 (36%), Gaps = 26/215 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIEEISLTFENGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTEVIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----TRDD---RSVRCLQINDVVIRV-- 112
            G        FFS    ++    L D  I ++     R D         +IN  ++ +  
Sbjct: 57  HGQQKAEIEGFFSLEKNLDLQALLEDNGIPVQDELIIRRDIFANGRSVSRINGQMVNLTF 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA----IDPRHRRRMIDFERLMRG 168
           + E+ ++L    +    D+     +      LD         +   ++     ++ + + 
Sbjct: 117 LKEVGQYL--VDIHGQHDQEELMRASHHLTILDSFGNQDFKDLKTSYQETFNSYKTVRKR 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
                            +  Q+AE+   +++ R E
Sbjct: 175 VIERQKNEREHKERIEMLTFQLAEI-EAVDLHRGE 208


>gi|297198696|ref|ZP_06916093.1| DNA repair protein RecN [Streptomyces sviceus ATCC 29083]
 gi|297147176|gb|EDY58588.2| DNA repair protein RecN [Streptomyces sviceus ATCC 29083]
          Length = 576

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +
Sbjct: 1  MLEEMRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----A 50

Query: 61 YADVTRIGSPSFFS 74
           A + RIG+     
Sbjct: 51 DAALVRIGAEKAVV 64


>gi|295101894|emb|CBK99439.1| SMC proteins Flexible Hinge Domain [Faecalibacterium prausnitzii
          L2-6]
          Length = 1104

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          +K L +  + N+ ++     A+ T  +G N VGKT IL+AI   L+  R F
Sbjct: 4  LKRLKLINWHNFENVTFDC-ARLTYMIGVNAVGKTTILDAIRYCLTTNRSF 53


>gi|257453528|ref|ZP_05618818.1| DNA repair protein RecN [Enhydrobacter aerosaccus SK60]
 gi|257448986|gb|EEV23939.1| DNA repair protein RecN [Enhydrobacter aerosaccus SK60]
          Length = 568

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L +       +  +  +A   I  G+ G GK+ +L+A++    GR       A + R
Sbjct: 2  LTQLTLQNLALVTNAEIEMNAGFNIITGETGAGKSLLLDALTLCVGGRS-----DAGLIR 56

Query: 67 IGSPSFFS 74
           G  +  +
Sbjct: 57 HGQTTADA 64


>gi|119472553|ref|ZP_01614601.1| putative SMC family protein [Alteromonadales bacterium TW-7]
 gi|119444877|gb|EAW26177.1| putative SMC family protein [Alteromonadales bacterium TW-7]
          Length = 1134

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 54/128 (42%), Gaps = 18/128 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++    ++ F  Q T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLSTIKLAGFKSFVEPTKIPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL---------QIN 106
             DV   G     + S  S     +   G  ++      R+  +++ L          +N
Sbjct: 61  MTDVIFNGSTNRKAISQASVELIFDNSLGEQELKNTFADRNQIAIKRLVTRDGQSLYFLN 120

Query: 107 DVVIRVVD 114
               R  D
Sbjct: 121 GSKCRKRD 128


>gi|127511754|ref|YP_001092951.1| hypothetical protein Shew_0820 [Shewanella loihica PV-4]
 gi|126637049|gb|ABO22692.1| conserved hypothetical protein [Shewanella loihica PV-4]
          Length = 395

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 70/222 (31%), Gaps = 24/222 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ +R+   +RL    +  +  G NG GK+N+ +A+  L+            + +
Sbjct: 2   LTTLAINNYRSLRDIRLPLG-RLNLVTGANGSGKSNLYKALRLLAQTAQ--GGVVNALAQ 58

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G              +G+     ++     +  + L++        DE +  + +    
Sbjct: 59  EGGLDSCFWAGPENLTKGMLSGDTEITPTVRQQTKRLKLG----FAGDEFSYLIELGLPK 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P    +F      +R  +  +     P           ++  R   + +G          
Sbjct: 115 PDNTTLFGLDPQIKREAI-WVGNKYRPA---------AVLVERRGPMVKGRAQQRGQDGW 164

Query: 187 E--AQMAELGVKINIA-----RVEMINALSSLIMEYVQKENF 221
           +   Q  + G  I        R   +  L   I  +   ++F
Sbjct: 165 QSLNQHMQHGDSIFTELSDPSRTPEVLRLRDSIRAWRFYDHF 206


>gi|320103925|ref|YP_004179516.1| ATPase [Isosphaera pallida ATCC 43644]
 gi|319751207|gb|ADV62967.1| ATPase [Isosphaera pallida ATCC 43644]
          Length = 409

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 62/399 (15%), Positives = 120/399 (30%), Gaps = 64/399 (16%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
              ++I+ +    +R + S+         I +G NG GKT + +  SFL           
Sbjct: 15  QPALRIETITTRNYRVFQSVTFEKLGPLVILIGANGSGKTTLFDLFSFLK--ESLASNVA 72

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDELNKHL 120
             V R G    F         +   DI IK      R +   L+I     R         
Sbjct: 73  QAVARRG---GFKELVSRGHQDESIDIEIKFRESGGRLATYLLKIKQQNNRP-------- 121

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRM-----VFAIDPRHRRRMIDFERLMRGRNRLLTE 175
               +   + +   G   +  RFLD           +  + +  +D +R         +E
Sbjct: 122 ---IVSREILQFRRGRHGQPWRFLDFEEGKGQAITNESAYGQAGVDAQR---------SE 169

Query: 176 GYFDSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
              D     +I+   Q  E   ++      ++      I ++   +  P  +      L 
Sbjct: 170 YKLDDPTILAIKGLGQFKEF--RVIAEFRNLLENW--YIADFHVADARPSTEAGYAEHLS 225

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD----------LIVDYCDKAIT 283
            + D +   + +   +   D      ++  T   P  +           L++ + D+A T
Sbjct: 226 TRGD-NVAQVAQYLYENHRDIFNR-ILNAMTQRVPGVNHVEAKPTEDGRLVLRFQDEAFT 283

Query: 284 IAHGST----GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV- 338
               S     G  K+           ++       P+L ++E    L       L     
Sbjct: 284 DPFISRYVSDGTIKMFA-------YLVLLYDPKPHPLLAIEEPENQLHPHLLAELMEEFR 336

Query: 339 --TDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
                G Q+F++     + +   E  +   +   Q   I
Sbjct: 337 AYAKRGGQVFVSTHSPDLLNE-AELDEVYWLEKRQGFSI 374


>gi|312385392|gb|EFR29912.1| hypothetical protein AND_00851 [Anopheles darlingi]
          Length = 586

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63
          +KF+ +  F++Y     +    Q +  +G NG GK+N ++AISF+   +    R     +
Sbjct: 5  LKFIEVENFKSYRGRTVIGPLKQFSAVIGPNGSGKSNFMDAISFVMGEKTNSLRVRKLPE 64

Query: 64 VTR 66
          +  
Sbjct: 65 LIH 67


>gi|310796359|gb|EFQ31820.1| RecF/RecN/SMC N terminal domain-containing protein [Glomerella
           graminicola M1.001]
          Length = 1172

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +  L +         VG+NG GK+ +L A++    G+     R  S   
Sbjct: 131 IESVECINFMCHERLYVELGPLINFIVGENGSGKSAVLTALTLCLGGKASSTNRGGSLKS 190

Query: 64  VTRIGSPSFFSTF 76
             + G  +     
Sbjct: 191 FIKEGQANSVIIV 203


>gi|237738717|ref|ZP_04569198.1| ATP binding protein [Fusobacterium sp. 2_1_31]
 gi|229424200|gb|EEO39247.1| ATP binding protein [Fusobacterium sp. 2_1_31]
          Length = 348

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          IK + I  +R    L +    ++  F+GDNG  KT ILE++  
Sbjct: 2  IKSIRIKNYRGIKDLEIDNFKKYNFFIGDNGSKKTTILESLGI 44


>gi|146076788|ref|XP_001463003.1| structural maintenance of chromosome (SMC) [Leishmania infantum
          JPCM5]
          Length = 1151

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY- 61
          +++K + I  F++YA  +             G NG GK+NI +AI F+      +R    
Sbjct: 1  MRVKSIVIDGFKSYAHRKELADLSPHFNAITGLNGSGKSNIFDAICFVMGITNLKRVRAE 60

Query: 62 --ADVT-RIGSPSFFSTFARVE 80
             ++  R G+    +    +E
Sbjct: 61 DPRELIFRAGTTGVHAARVTIE 82


>gi|116328203|ref|YP_797923.1| DNA repair protein [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
 gi|116120947|gb|ABJ78990.1| DNA repair protein [Leptospira borgpetersenii serovar
          Hardjo-bovis L550]
          Length = 568

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-T 65
          ++ LNI +F       + F    T+  G+ G GK+ IL+AIS L  G+       + +  
Sbjct: 2  LRTLNIRDFALIEEACIDFQKGMTVITGETGAGKSLILDAISSLLGGKS------SPMEI 55

Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99
          R G+P +      +EG+  L+  S+ LE   ++ 
Sbjct: 56 RTGAPRYV-----LEGVFDLSKNSVALEWLKEKG 84


>gi|33594037|ref|NP_881681.1| hypothetical protein BP3115 [Bordetella pertussis Tohama I]
 gi|33564111|emb|CAE43383.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
 gi|332383454|gb|AEE68301.1| hypothetical protein BPTD_3078 [Bordetella pertussis CS]
          Length = 403

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          MT    I  + +  +++     +      T  VG NG GK+N ++A+ F+     +
Sbjct: 1  MTQHPFISRVAVRNYKSIGYCDVNLRP-LTYLVGHNGAGKSNFMDALHFVCDALSY 55


>gi|315157620|gb|EFU01637.1| DNA repair protein RecN [Enterococcus faecalis TX0312]
          Length = 557

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 32/262 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + + A+  ++ +   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
              +L G  D   D+   ++ E
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE 254


>gi|312126534|ref|YP_003991408.1| ATP-dependent old family endonuclease [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776553|gb|ADQ06039.1| ATP-dependent OLD family endonuclease [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 576

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 15/112 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK + I  FR+    +      + + VG N  GK+NIL A+             Y D 
Sbjct: 1   MKIKTVFIHNFRSIKDGKFDLYD-YNVLVGSNNSGKSNILTALRIF----------YEDE 49

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI---NDVVIRVV 113
            +    + F  F + +  E   +I   L   + +S++   +   N + +R  
Sbjct: 50  IKYNDSNDFPKF-KTDDNESWIEIEYVLSEEEVKSIKKEYVYDNNILKVRKY 100


>gi|312904547|ref|ZP_07763705.1| DNA repair protein RecN [Enterococcus faecalis TX0635]
 gi|310632060|gb|EFQ15343.1| DNA repair protein RecN [Enterococcus faecalis TX0635]
 gi|315577399|gb|EFU89590.1| DNA repair protein RecN [Enterococcus faecalis TX0630]
          Length = 557

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 32/262 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + + A+  ++ +   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
              +L G  D   D+   ++ E
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE 254


>gi|308163233|gb|EFO65589.1| SMC6 protein [Giardia lamblia P15]
          Length = 1303

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L+I+ F  +    + F    ++  G NG GK++IL+AI F+  G+       A   R
Sbjct: 45  ILRLHITNFLTHRDKIVDFTCPVSLIHGPNGAGKSSILQAIHFVLGGK-------AKNIR 97

Query: 67  IGSPSF 72
                F
Sbjct: 98  DNCERF 103


>gi|294947292|ref|XP_002785315.1| SMC4'SMC4,, putative [Perkinsus marinus ATCC 50983]
 gi|239899088|gb|EER17111.1| SMC4'SMC4,, putative [Perkinsus marinus ATCC 50983]
          Length = 1349

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 5/117 (4%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRA 59
           R+ I+ + +  F++Y   +    F    ++ VG NG GK+NI++A+ F+     +  R+ 
Sbjct: 365 RLVIRDIVLENFKSYGGHKYIGTFSNNFSVIVGPNGSGKSNIIDAMLFVFGKKAKQIRQN 424

Query: 60  SYADVTRI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             A++    G         ++   E   +   ++        R    N      +D+
Sbjct: 425 KLAELIHNAGGERPDRARVKIGFAEVNNEDGQEIPGSAFTISRECYANSSSKYAIDD 481


>gi|190341583|gb|ACE74868.1| RecN [Escherichia vulneris]
          Length = 553

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 68/207 (32%), Gaps = 31/207 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGSPS-------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     +E   +  ++     D   R   IN   V + 
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEANQLEDGRECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +  ++    S +++  LD       +  +   H R+     R +
Sbjct: 116 QLRELGQLLIQIHGQHAHQQLIK--SEQQKALLDGYAGEYALTQLMAEHYRQWHQSCREL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               +   E    +        Q+ EL
Sbjct: 174 AQHQQQSQERTARAELLEY---QLKEL 197


>gi|163915543|gb|AAI57408.1| Unknown (protein for IMAGE:6319183) [Xenopus laevis]
          Length = 360

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS     
Sbjct: 1  MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSH 55


>gi|49481979|gb|AAT66701.1| DNA repair and genetic recombination protein [Geobacillus
           thermoglucosidasius]
          Length = 573

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/280 (16%), Positives = 92/280 (32%), Gaps = 51/280 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+   F    SL + FD   T+  G+ G GK+ I++AI  L  GRG      A+  R
Sbjct: 2   LAELSXKNFAINESLSVSFDKGLTVLTGETGAGKSIIIDAIQLLIGGRG-----SAEFVR 56

Query: 67  IGSPSFFSTFARVEGM-----------EGLADISIKLETR--------DDRSVRCLQIND 107
            G        A +EG+           +  A++ I +                   ++N 
Sbjct: 57  YGEEK-----AEIEGLFLLDNENHPCYDKCAEVGIDISEGMVVLRREIFANGKSVCRVNG 111

Query: 108 VVI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMID 161
            ++   ++ ++   L           +           LD      + A    +R     
Sbjct: 112 KLVTTAILRDIGSTLVDIHGQHEHQELM--DPSRHLPLLDEYGGAEIAAALEEYRAVYEK 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN--ALSS 210
           +E+L +   +L       +     +  Q+ E+           ++   +V+++N   +  
Sbjct: 170 YEQLRKKLKKLNENEQQMAHRLDLLTFQLDEIQKANLQVNEDEQLMEEKVKIMNLPKIYE 229

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFC---ALKEEY 247
            +    +  +  H  L   G      +       ALKE Y
Sbjct: 230 ALKHSYEALSGEHRGLDWIGLAMSHLEDVTSISPALKEAY 269


>gi|158314580|ref|YP_001507088.1| ATP-dependent OLD family endonuclease [Frankia sp. EAN1pec]
 gi|158109985|gb|ABW12182.1| ATP-dependent endonuclease of the OLD family-like protein
          [Frankia sp. EAN1pec]
          Length = 608

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
          +++  + +  FR   +  +  D   T+ VG N VGK+ + EA+   L P R FRR    +
Sbjct: 1  MQVCRVTLRHFRGVEAGTVYLD-GDTLLVGSNSVGKSTVCEALDLVLGPERMFRRPVIDE 59

Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKL 92
                  F S +  V+G      I + L
Sbjct: 60 Y-----DFFASQYQDVDGSLPEIRIEVVL 83



 Score = 37.2 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 6/93 (6%)

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA-PILLLDEISAHLDEDKRNALFR 336
               +     STG   +++  +       I+   G    I  ++E    L    +  L  
Sbjct: 285 GAHGVPFNRLSTGSLNLLVFAL----LTYIAELKGDDSVIFAMEEPEIALPPHAQRRLVD 340

Query: 337 IVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
            V     Q  +T     V +   +  + + +S+
Sbjct: 341 FVVSRMGQAIITSHSPYVIEKF-DPGQIVVLSH 372


>gi|321457133|gb|EFX68226.1| structural maintenance of chromosome protein 3 [Daphnia pulex]
          Length = 1200

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y    +   F   H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MYIKQVIIQGFKSYREQTVVEPFHPGHNVVVGRNGSGKSNFFYAIQFVLSDEFNHLRPEQ 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
                          A VE +    D  + ++ ++    R +
Sbjct: 61  RQALLHEGTGPRVISAYVEIIFDNTDNRLPIDKKEVSLRRVI 102



 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 76/259 (29%), Gaps = 37/259 (14%)

Query: 110  IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRF-----LDRMVFAIDPRHRRRMIDFER 164
             + + E  + +R    +PS           +  F      +  +      +++ +  F  
Sbjct: 933  QQKITECTEKIRDLGSLPSDSFDKYQSMATKLLFKQLEKANSELKKYSHVNKKALDQFIS 992

Query: 165  LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPH 223
                +++LL            I+  M+ L  +   A       +S    E  Q+     H
Sbjct: 993  FSEEKSKLLERKEELDHGYDKIKELMSTLEYRKYEALQFTFKQVSKYFSEVFQRLVPNGH 1052

Query: 224  IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
              L ++   D           +++                   G     + V +  +   
Sbjct: 1053 AYLKVSNSEDASASFGDTEGTDQF------------------TGVA---IKVSFSGQNAE 1091

Query: 284  IA---HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
            +      S G++ +V + +  +           AP  L DEI   LD   R  +  ++ +
Sbjct: 1092 MKDMNQLSGGQKSLVALALIFS-----IQKCDPAPFYLFDEIDQALDAQHRKGVADMIHE 1146

Query: 341  --IGSQIFMTGTDKSVFDS 357
                +Q   T     + + 
Sbjct: 1147 HSKNAQFITTTFRPELLEH 1165


>gi|303229285|ref|ZP_07316080.1| conserved hypothetical protein [Veillonella atypica
          ACS-134-V-Col7a]
 gi|302516058|gb|EFL58005.1| conserved hypothetical protein [Veillonella atypica
          ACS-134-V-Col7a]
          Length = 635

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +K+  L +  F+   S  L  +    +  GDN  GKT + +++ +L  G+     +  ++
Sbjct: 1  MKLTKLELLNFKGLTSFTLDLN-GDVVIRGDNATGKTTVFDSVCWLLFGKDSLGRADFEI 59


>gi|169806692|ref|XP_001828090.1| DNA repair protein rad18 [Enterocytozoon bieneusi H348]
 gi|161779218|gb|EDQ31242.1| DNA repair protein rad18 [Enterocytozoon bieneusi H348]
          Length = 940

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
          I  + +  F  +++  + F  + T   G NG GK+  + A+  +  G+      R  S+ 
Sbjct: 10 ISKIILINFMCHSNTEINFSNRITCITGANGSGKSAFMIALGIV-FGQSAKKLERGNSFK 68

Query: 63 DVTRIGSPSFFSTF 76
          ++ +    S     
Sbjct: 69 NLIKQNETSATIIV 82


>gi|115565211|emb|CAL49464.1| chondroitin sulfate proteoglycan 6 (bamacan) [Xenopus (Silurana)
          tropicalis]
          Length = 458

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS     
Sbjct: 1  MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSH 55


>gi|225678645|gb|EEH16929.1| condensin subunit Cut3 [Paracoccidioides brasiliensis Pb03]
          Length = 1448

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 16/120 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F    +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 241 PRMVITHLVMTNFKSYAGRQIVGPFHVSFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 297

Query: 61  YAD-----VTRIGSP----SFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVV 109
                   +    +      F       E +  L D   ++  +++   S R  + N   
Sbjct: 298 MRQGKISALIHNSANFPDLQFCEVEVHFEEIMDLPDGGHEVVPDSQLVVSRRAFKNNSSK 357


>gi|170285139|gb|AAI61245.1| Unknown (protein for IMAGE:8931875) [Xenopus (Silurana)
          tropicalis]
          Length = 429

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS     
Sbjct: 1  MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSH 55


>gi|160902796|ref|YP_001568377.1| SMC domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360440|gb|ABX32054.1| SMC domain protein [Petrotoga mobilis SJ95]
          Length = 1174

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +K+  L I  F+++        D      +G NG GK+NI++AI +L   +     R + 
Sbjct: 1   MKLLSLEIEGFKSFGRRTYFNLDKNIIAIIGPNGSGKSNIVDAIRWLLGEQSQKQMRISE 60

Query: 61  YADVTRIGSPSFFST-FARVE---GMEGLADISIKLETRDDRSVRCLQINDV 108
             DV  IGS    S+ +A+V      +    I I      D S +    N V
Sbjct: 61  KNDVLHIGSNGSDSSNYAKVSLVVQNDNNEKIKISKILEKDESNKYYVNNKV 112


>gi|116330927|ref|YP_800645.1| DNA repair protein [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
 gi|116124616|gb|ABJ75887.1| DNA repair protein [Leptospira borgpetersenii serovar
          Hardjo-bovis JB197]
          Length = 568

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 12/94 (12%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-T 65
          ++ LNI +F       + F    T+  G+ G GK+ IL+AIS L  G+       + +  
Sbjct: 2  LRTLNIRDFALIEEACIDFQKGMTVITGETGAGKSLILDAISSLLGGKS------SPMEI 55

Query: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99
          R G+P +      +EG+  L+  S+ LE   ++ 
Sbjct: 56 RTGAPRYV-----LEGVFDLSKNSVALEWLKEKG 84


>gi|145222844|ref|YP_001133522.1| hypothetical protein Mflv_2256 [Mycobacterium gilvum PYR-GCK]
 gi|315443311|ref|YP_004076190.1| hypothetical protein Mspyr1_16890 [Mycobacterium sp. Spyr1]
 gi|145215330|gb|ABP44734.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
 gi|315261614|gb|ADT98355.1| hypothetical protein Mspyr1_16890 [Mycobacterium sp. Spyr1]
          Length = 883

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R      + F D    +  G N VGK+++LEA+  L
Sbjct: 1  MKLHRLVLTNYRGITHRDIEFPDRGVVVVSGANEVGKSSMLEALDLL 47


>gi|330503730|ref|YP_004380599.1| hypothetical protein MDS_2816 [Pseudomonas mendocina NK-01]
 gi|328918016|gb|AEB58847.1| hypothetical protein MDS_2816 [Pseudomonas mendocina NK-01]
          Length = 888

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           +K++ L +  FR + +        Q  +F G NG GKT++ E + +   G
Sbjct: 84  VKLRHLTLGPFRGFRTPEPFDLSKQIILFYGPNGSGKTSLCEGLEYALLG 133



 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 83/260 (31%), Gaps = 33/260 (12%)

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE-RLMRG---RNR 171
           L K L +       DR+ +     RR   DR+    + R   R+ +F+ R+      R +
Sbjct: 476 LAKILAVV------DRMAAQDDTSRRAQQDRLPHVAERR---RLSEFQLRVQAQDLKRQQ 526

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           L       +S   + +   AEL   I  A  E ++       +         ++ +    
Sbjct: 527 LTENVEAANSRIKAFDETNAEL---IAQAEQEKLDIARDAPFKVAYDRFLEELR-AYRDQ 582

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD--LIVDYCDKAITIAHG-- 287
           L  +         ++           D      L  P   D  + + +            
Sbjct: 583 LPEQLMTGLNDAAKDLYNAFNRN-DRDEDKLSALHLPLAGDGKIEISFRGNPDARMDALH 641

Query: 288 --STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK----RNALFRIVTDI 341
             S G  + + + I +A A+ I       P+++ D+    +D D     R A+F      
Sbjct: 642 VLSEGHIRCLGLAILMAKAKSIG-----CPVIVFDDAINAIDHDHRGGIREAIFESDQFA 696

Query: 342 GSQIFMTGTDKSVFDSLNET 361
            +Q+ +T         + + 
Sbjct: 697 QTQLIVTCHSNEFIKDIQQH 716


>gi|327405025|ref|YP_004345863.1| hypothetical protein Fluta_3049 [Fluviicola taffensis DSM 16823]
 gi|327320533|gb|AEA45025.1| hypothetical protein Fluta_3049 [Fluviicola taffensis DSM 16823]
          Length = 655

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/380 (16%), Positives = 135/380 (35%), Gaps = 53/380 (13%)

Query: 6   KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +I  +    ++ +      +  ++ + +  +  G+NG GK+++ E +      + F  +S
Sbjct: 3   RISEIEFVNYKAFYNRGEENKIIIPEGKSVLIYGENGSGKSSVYEGL------KQFFNSS 56

Query: 61  YADVTRIGSPSFFSTFARVEGM------EGLADISIKLETRD--DRSVRCLQINDVVIRV 112
              V  I S     +  R++        E L D+S+K+   D      R   + +  I+ 
Sbjct: 57  DNTVEVIPSRHIAVSKTRIKNEDTDIQSEVLNDVSVKITFTDVHGCEQREFGVTNNNIQG 116

Query: 113 VDELNKHLRISWLVPSMDRI-------FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
            + + +   ++  +   + +           +  RRRF + ++  I       +   +  
Sbjct: 117 ANYIAQANLLNSFLSYRELLQTYLMDDLRDRTEFRRRFANLLIENI-------LAKQKNS 169

Query: 166 MRGRNRL--LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           +  R+ L      +   +W       +   G+ ++I R+ +I  L+ +I     K   PH
Sbjct: 170 VTQRSYLHSWESLFAPRAWYKEENLALFAQGLDLDIRRINLI--LNEII-----KFFEPH 222

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
           +++ L  F++   D    + KE    +       +     +L G    +   ++      
Sbjct: 223 LEVQLV-FIEPYIDYIHSSKKE----RTGKHPICEIDLSVSLFGLDTENDEENHLTVLNE 277

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
                      + + I+ A             IL LD+I   LD   R  L  I+ +   
Sbjct: 278 ARLS------ALAISIYFAALINTPQNNFDFKILYLDDIFIGLDMSNRLPLLNILKNFKK 331

Query: 344 QIFMTGTDKSVFDSLNETAK 363
            I     D+   + + E  K
Sbjct: 332 PIIEHFVDEENDNKIIERIK 351


>gi|308479597|ref|XP_003102007.1| hypothetical protein CRE_07628 [Caenorhabditis remanei]
 gi|308262387|gb|EFP06340.1| hypothetical protein CRE_07628 [Caenorhabditis remanei]
          Length = 331

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 72/219 (32%), Gaps = 23/219 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  +++   R+     L F+       G NG GKT +L+AI +             ++ R
Sbjct: 6   IVQVSVLGVRHVLDQTLEFENGLNAIEGYNGSGKTTLLKAIKYCLNY-----IPDDNLVR 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR----- 121
             S S    F    G+      S      +D  ++   IN   +   + +          
Sbjct: 61  RDS-SVAVKFRLTNGLYRTYRKSTG--DPEDEELKPYSINGNKVSDTEYVVDLNNVGINN 117

Query: 122 --ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GY 177
             + +++P  D        E  R  +  +  +       + D +  +      L    G 
Sbjct: 118 HTVHFMIPEFDW------KEMARKDNWQLALLIENLSPELEDIKYDLEEVQEKLRRRSGK 171

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
                   ++ Q+ E+  +     +E  +AL++ +  Y 
Sbjct: 172 EKDEEFDRLQRQLEEVKTRRRTTFLESFDALATQVDRYY 210


>gi|289663885|ref|ZP_06485466.1| ATPase [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 435

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRA---- 59
           +I++L I  FR    L L      T+ +G NG GK+ + +  +FL+     G RRA    
Sbjct: 36  RIEYLKIQNFRAIRDLELRDITPLTVLLGPNGSGKSTVFDVFAFLAECFELGLRRAWDKR 95

Query: 60  -SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
               ++   GS    +    ++  E    +     + D+RS   + I + +     E  +
Sbjct: 96  GRAKELKTRGSEGPITI--EIKYREPGYPLITYHLSVDERSSSPVVIEEWLQWRRSERGR 153

Query: 119 HLRIS 123
             R  
Sbjct: 154 PFRFL 158


>gi|226295006|gb|EEH50426.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1448

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 16/120 (13%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F    +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 241 PRMVITHLVMTNFKSYAGRQIVGPFHVSFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 297

Query: 61  YAD-----VTRIGSP----SFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVV 109
                   +    +      F       E +  L D   ++  +++   S R  + N   
Sbjct: 298 MRQGKISALIHNSANFPDLQFCEVEVHFEEIMDLPDGGHEVVPDSQLVVSRRAFKNNSSK 357


>gi|289582242|ref|YP_003480708.1| chromosome segregation protein SMC [Natrialba magadii ATCC 43099]
 gi|289531795|gb|ADD06146.1| chromosome segregation protein SMC [Natrialba magadii ATCC 43099]
          Length = 1189

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 101/300 (33%), Gaps = 63/300 (21%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
           + IK + + +F+++    ++ F    T+  G NG GK+NI++A+ F   L+  RG R   
Sbjct: 1   MYIKAVVLDKFKSFGRKTKIPFYEDFTVVTGPNGSGKSNIIDAVLFALGLARTRGIRAEK 60

Query: 61  YADVT-----RIGSPSFFSTFARVEGMEGLADISIKL----------------ETRDDRS 99
             D+        GS S     A VE +   +D ++                  E R  R 
Sbjct: 61  LTDLIYNPGHEDGSDSTGPREAIVEVILDNSDETLSRSQVVNAAGSEDVGDVDEIRIRRR 120

Query: 100 VRCL--------QINDVVIRVVDELNKHLRISWLVPS---------MDRIFSGLSMERRR 142
           V+           +ND  +  + ++   L  + + P          +  I +     RR+
Sbjct: 121 VKETEDNYYSYYYLNDRAVN-LSDIQDLLAQAGVTPEGYNVVMQGDVTEIINMTPHARRQ 179

Query: 143 FLDR--MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE-----AQMAELGV 195
            +D    V   D +      + E         + E   D +     E      Q+A+   
Sbjct: 180 IIDEIAGVAEFDAKKEDAFEELE---------IVEERIDEAELRIEEKRDRLDQLAD--E 228

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
           +    R   +         Y +       +  L    D   D    +  E+  ++L + +
Sbjct: 229 RRQAMRYRRLRREKEEYEGYKKASELEEKRAELESAEDSVDD--LESDLEDLQRELDERQ 286


>gi|218189998|gb|EEC72425.1| hypothetical protein OsI_05743 [Oryza sativa Indica Group]
 gi|222622118|gb|EEE56250.1| hypothetical protein OsJ_05272 [Oryza sativa Japonica Group]
          Length = 679

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 11/117 (9%)

Query: 5   IKIKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRAS 60
           + IK + I  F++Y    +    F  +  + VG NG GK+N   AI   LS      R+ 
Sbjct: 1   MYIKKVVIEGFKSYRE-EISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSE 59

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                           A VE +   +D  I ++  +      +++   V    DE  
Sbjct: 60  DRGALLHEGAGHSVVSAFVEIVFDNSDNRIPVDKEE------VRLRRTVASKKDEYY 110


>gi|206561616|ref|YP_002232381.1| putative RecN DNA repair protein [Burkholderia cenocepacia J2315]
 gi|198037658|emb|CAR53601.1| putative RecN DNA repair protein [Burkholderia cenocepacia J2315]
          Length = 549

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 91/259 (35%), Gaps = 30/259 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  ++F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFSVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++     A+ ++ L    D + R    IN     +  + 
Sbjct: 57  TGCGRADITAEFTPHDRVARWLDEHAFDAEDTVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 ELGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAD--AANVARAWRVWRDATQAID 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+  + +  H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQAGEW-DEVSNEHKRLSHSANLIE 223

Query: 235 KFDQSFCALKEEYAKKLFD 253
               +  AL E     L  
Sbjct: 224 GVRGALNALSESDDAMLAQ 242


>gi|72548938|ref|XP_843456.1| structural maintenance of chromosome (SMC) family protein
          [Leishmania major strain Friedlin]
 gi|323363973|emb|CBZ12979.1| putative structural maintenance of chromosome (SMC) family
          protein [Leishmania major strain Friedlin]
          Length = 1321

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 6  KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-------SPGRGFR 57
          KI  + +  F++Y     +      T  VG NG GK+N+++A+SF+       +     R
Sbjct: 4  KIHRVELDNFKSYYGKAVIGPFKDFTCIVGPNGAGKSNLMDALSFVLSSTVTQASASSMR 63

Query: 58 RASYADVTRIGSPSF 72
            S  D     + + 
Sbjct: 64 GKSAVDFIHRKAKTA 78


>gi|296110651|ref|YP_003621032.1| DNA repair protein RecN [Leuconostoc kimchii IMSNU 11154]
 gi|295832182|gb|ADG40063.1| DNA repair protein RecN [Leuconostoc kimchii IMSNU 11154]
          Length = 558

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I  F     + L F+   ++  G+ G GK+ I++A+  L+ GR     + +D+ R
Sbjct: 2  LENLIIENFAIIEKVDLQFEGGMSVLTGETGAGKSIIIDALLMLTGGR-----ASSDMIR 56

Query: 67 IGSPSFF 73
           GS    
Sbjct: 57 HGSKKAI 63


>gi|251782887|ref|YP_002997190.1| DNA repair protein [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242391517|dbj|BAH81976.1| DNA repair protein [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
          Length = 554

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 74/211 (35%), Gaps = 33/211 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V
Sbjct: 1   MMLLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTEV 55

Query: 65  TRIGS-----PSFFSTFARVEGMEGLADISIKLE----TRDD---RSVRCLQINDVVIRV 112
            R G+       FFS  A  E +  L    I +E     R D         +IN  ++ +
Sbjct: 56  IRRGANKAEIEGFFSVDATPELVACLESSGIAMEEELIIRRDIFANGRSVSRINGQMVNL 115

Query: 113 V----------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
                      D   +H +   + P + +           F D+    +   ++     +
Sbjct: 116 ATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDA------FGDKAFEQLKENYQLIFDRY 169

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           + L R                  +  Q+AE+
Sbjct: 170 KSLRRQVIDKQKNEKEHKDRIDMLAFQIAEI 200


>gi|240173088|ref|ZP_04751746.1| hypothetical protein MkanA1_27496 [Mycobacterium kansasii ATCC
          12478]
          Length = 297

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R      + F D    +  G N  GK++++EA+  L
Sbjct: 1  MKLHRLVVTNYRGITHREIAFPDHGVVVVCGANESGKSSMIEALDLL 47


>gi|28867287|ref|NP_789906.1| hypothetical protein PSPTO_0046 [Pseudomonas syringae pv. tomato
          str. DC3000]
 gi|28850521|gb|AAO53601.1| conserved protein of unknown function [Pseudomonas syringae pv.
          tomato str. DC3000]
          Length = 661

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61
          + I+   +S FR +    + +    + T  VG N  GKT +L A++      R  R    
Sbjct: 1  MLIESAVLSGFRCFAPRPISVTISPKITTIVGPNAAGKTALLHALAKLFGVTRAQRTVRR 60

Query: 62 AD 63
          +D
Sbjct: 61 SD 62


>gi|78065307|ref|YP_368076.1| DNA repair protein RecN [Burkholderia sp. 383]
 gi|77966052|gb|ABB07432.1| DNA replication and repair protein RecN [Burkholderia sp. 383]
          Length = 549

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 90/259 (34%), Gaps = 30/259 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  ++F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFSVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPSF-----FSTFARV-----EGMEGLADISIKLETRDDRSVRCLQINDV--VIRVVD 114
           IG         F+   RV     E      D  +     D        IN     +  + 
Sbjct: 57  IGCGRADITAEFTQHDRVARWLDEHAFDTEDTVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 ELGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAD--AANVARAWRVWRDATQAIE 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+  + +  H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQPGEW-DEVSNEHKRLSHSANLIE 223

Query: 235 KFDQSFCALKEEYAKKLFD 253
               +  AL E     L  
Sbjct: 224 GVRGALNALSESDDAMLAQ 242


>gi|331269450|ref|YP_004395942.1| DNA repair protein RecN [Clostridium botulinum BKT015925]
 gi|329126000|gb|AEB75945.1| DNA repair protein RecN [Clostridium botulinum BKT015925]
          Length = 564

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  F     L + F+    +  G+ G GK+ +++AI+++  G+ F       + R
Sbjct: 2  LLQLNIKNFALIEELTINFEKGFNVLTGETGAGKSILIDAINYVLGGK-F----NKGLIR 56

Query: 67 IGSPSFFS 74
           G    F 
Sbjct: 57 TGENRTFV 64


>gi|284098248|ref|ZP_06385869.1| ATPase [Candidatus Poribacteria sp. WGA-A3]
 gi|283830570|gb|EFC34731.1| ATPase [Candidatus Poribacteria sp. WGA-A3]
          Length = 172

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 17/131 (12%)

Query: 5   IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + I+ + ++   ++   +  L       + +G NG GK+N++E I  L       +A+  
Sbjct: 1   MLIQSIKLTNVLSFGPDAQELELKP-LNVLIGPNGSGKSNLIEVIGLL-------QAAPK 52

Query: 63  DV---TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           D+    R G       + + E    LA+I + +  +++R +R + +     +     ++ 
Sbjct: 53  DLLTPIREGGGVGNWIW-QGESGSNLAEIEVLVSYQNNRLLRYMLVFRKDDQRFQVNSEQ 111

Query: 120 LRISWLVPSMD 130
           L      PS D
Sbjct: 112 LDPV---PSDD 119


>gi|160331081|ref|XP_001712248.1| smc3 [Hemiselmis andersenii]
 gi|159765695|gb|ABW97923.1| smc3 [Hemiselmis andersenii]
          Length = 1087

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 2/120 (1%)

Query: 5   IKIKFLNISEFR--NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + +  + I  F+  +Y  L+        +FVG NG GKT+  +A+  L   +      + 
Sbjct: 1   MFLLSIKIFNFKCFSYHCLKENISCGINVFVGANGSGKTSFFDAVFNLFFEKEPHSKIFK 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
           D     S     +++ +E +   +D    +  +  +  R   +    I + D L      
Sbjct: 61  DERFTNSGEGEKSYSIIECIFDNSDGFFPIPRKKVKIRRIFNMKWDKIFINDSLFSLKNF 120


>gi|308126085|ref|ZP_07663627.1| nucleoside triphosphate hydrolase domain protein [Vibrio
          parahaemolyticus AQ4037]
 gi|308108734|gb|EFO46274.1| nucleoside triphosphate hydrolase domain protein [Vibrio
          parahaemolyticus AQ4037]
          Length = 245

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++++ + IS FR    L L FD   T  +G+N  GK+++L+A+S   P  G
Sbjct: 1  MRLERIEISGFRGIKRLSLSFDE-LTTLIGENTWGKSSLLDALSIALPANG 50


>gi|47937470|gb|AAH72043.1| LOC432330 protein [Xenopus laevis]
          Length = 457

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS     
Sbjct: 1  MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSH 55


>gi|74216698|dbj|BAE37767.1| unnamed protein product [Mus musculus]
          Length = 353

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS     
Sbjct: 1  MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSH 55


>gi|291563843|emb|CBL42659.1| Predicted ATP-dependent endonuclease of the OLD family
          [butyrate-producing bacterium SS3/4]
          Length = 615

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +++  + I  +R      L  + + T+ VG N   KT+  E I
Sbjct: 1  MQLSKIRIKNYRLLIDAELEVEPKTTLIVGRNNTAKTSCFECI 43


>gi|255324488|ref|ZP_05365605.1| ATPase involved in DNA repair [Corynebacterium tuberculostearicum
          SK141]
 gi|255298394|gb|EET77694.1| ATPase involved in DNA repair [Corynebacterium tuberculostearicum
          SK141]
          Length = 861

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSP----GRGFRR 58
          ++I  L ++  R    L L    +    +  G+N  GK+ I+EA+  +      GR  R 
Sbjct: 1  MRIHRLELTNVRGIEHLVLDELPETGVVVIHGENEAGKSTIVEALDVVLTEKHSGRSKRI 60

Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADI 88
           S   V   G        A +   E    I
Sbjct: 61 RSLQPV---GKDVAPEVTAELSVGEYRFRI 87


>gi|220936009|ref|YP_002514908.1| ATP-dependent OLD family endonuclease [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219997319|gb|ACL73921.1| ATP-dependent OLD family endonuclease [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 674

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K++   I  FR  A ++L  +   T+ VG N  GKT++ E I  L
Sbjct: 1  MKLRHAKIKNFRLLADVQLALEDLTTVVVGRNNSGKTSLSEIIRRL 46


>gi|160935609|ref|ZP_02082984.1| hypothetical protein CLOBOL_00499 [Clostridium bolteae ATCC
          BAA-613]
 gi|158441353|gb|EDP19063.1| hypothetical protein CLOBOL_00499 [Clostridium bolteae ATCC
          BAA-613]
          Length = 659

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          N +++ +L I  F++  S+ +    +  I VG N  GKT++L+AI  +   
Sbjct: 30 NLMQLTYLRIHNFKSIRSMEIRDIERALILVGKNNTGKTSVLDAICAVCGC 80


>gi|284052395|ref|ZP_06382605.1| hypothetical protein AplaP_13088 [Arthrospira platensis str.
          Paraca]
          Length = 382

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I ++ +  +RN+ ++ +    +    VG N  GK+N L+A  FL
Sbjct: 1  MIISYIILKNWRNFRAVEVDLCDRI-FIVGPNACGKSNFLDAFRFL 45


>gi|256423704|ref|YP_003124357.1| chromosome segregation protein SMC [Chitinophaga pinensis DSM
          2588]
 gi|256038612|gb|ACU62156.1| chromosome segregation protein SMC [Chitinophaga pinensis DSM
          2588]
          Length = 1176

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI 47
          +++K L I  F+++A    L FD   T  +G NG GK+NI+++I
Sbjct: 1  MRLKTLEIKGFKSFADKTVLHFDEGVTGVIGPNGCGKSNIIDSI 44



 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 15/162 (9%)

Query: 194  GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
              +    R E I  L         KE+       +    + KF  +F  +KE + +    
Sbjct: 986  AYQEMKKRYEFI--LEQKTDLVTAKESLMATIQEVEATANQKFLDTFNQVKENFVRVFKA 1043

Query: 254  GRKMDSMSRRTLIGP-HRSDLIVDYCDKA-----ITIAHGSTGEQKVVLVGIFLAHARLI 307
                +      L  P + +D  ++   K        I   S GE+ +    +  A   + 
Sbjct: 1044 LFTEEDQCDMILNDPENLADTGIEIIAKPKGKRPAAITQLSGGEKTLTATALLFAIYLI- 1102

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
                  AP  +LDE+ A LD+        ++      SQ  +
Sbjct: 1103 ----KPAPFCILDEVDAPLDDANVGKFTNMIRKFSDNSQFII 1140


>gi|226953377|ref|ZP_03823841.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
 gi|226835873|gb|EEH68256.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
          Length = 413

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++++ + I  F++   +        +  VG NG GK+N  +A+ F 
Sbjct: 1  MELQRICIRGFKSIEDVIFEPKTGFSCLVGSNGAGKSNFCDALIFF 46


>gi|295668451|ref|XP_002794774.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226285467|gb|EEH41033.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1449

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 10/91 (10%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F    +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 242 PRMVITHLVMTNFKSYAGRQIVGPFHVSFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 298

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                   +    +      F  VE      
Sbjct: 299 MRQGKISALIHNSANFPDLQFCEVEVHFEEI 329


>gi|124023035|ref|YP_001017342.1| RecF protein:ABC transporter [Prochlorococcus marinus str. MIT
          9303]
 gi|123963321|gb|ABM78077.1| RecF protein:ABC transporter [Prochlorococcus marinus str. MIT
          9303]
          Length = 918

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +++   ++   R +  L + F    T+  G N  GK++++EA+ 
Sbjct: 1  MRLLHCHLENIRRHWLLDIDFSPGLTLISGANESGKSSLVEAMH 44



 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 99/292 (33%), Gaps = 33/292 (11%)

Query: 78  RVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDELNKHLRISWLVPSMDRIFS 134
           ++E  E    +  +     D   + L++N  +    + V +L + L    L      +  
Sbjct: 645 QIERKEHRKSLLTEHGPEPDIEEKLLKLNQSLTHLGQKVSDLEQQLGNQTLQAIKSALAE 704

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
             + E+R             H + +      +R R     EG       +++E       
Sbjct: 705 LDAQEKR----------LQEHLQVLSGQRGALRER----CEGLGSLEPYAALEEARVNFN 750

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
                 R ++   + +   + + K +F   +  L+        Q+ C+  +       DG
Sbjct: 751 QAKLEEREQL---MLAHAQQRLLK-SFQQAQAELSNRYTTPLRQAICSYLQPLLGNENDG 806

Query: 255 RKM--DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             +  D       +G  R         + +     S G ++ +   + L+ A  +     
Sbjct: 807 CHLNFDPHDGFRELGLRRD-------GQNVQFRDLSGGMKEQLNGALRLSIADALKGGHD 859

Query: 313 FAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNET 361
               +L D+   + D D+  ++ R++T     G Q+ +   D + ++++ + 
Sbjct: 860 DCLPILFDDAFTNTDPDRIESVLRMMTQAVKRGLQVIVLSCDPTPYETIADK 911


>gi|66391506|ref|YP_239031.1| gp46 recombination endonuclease subunit [Enterobacteria phage RB43]
 gi|62288594|gb|AAX78577.1| gp46 recombination endonuclease subunit [Enterobacteria phage RB43]
          Length = 567

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 93/275 (33%), Gaps = 55/275 (20%)

Query: 5   IKIKFLNISEFRNYASL-----RLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           +K+ F  I  ++N  S+      L FD A+ T+  G NG GK+ ++EA+++   G+ FR 
Sbjct: 1   MKLNFKKIK-YQNILSVGNTPIELEFDTAKKTLITGKNGGGKSTLIEALTYALFGKSFRD 59

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD---- 114
                +      S       VE        S K+       V  +  N   +        
Sbjct: 60  LKVGQLVN----SVNKKKCLVELEIEYGKDSYKIVRGQKPKVFEIWKNGDKLAEDSASGD 115

Query: 115 -----------ELNKHLRISWL-----VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
                       L    ++  L      P M+      + +RR+ ++ ++          
Sbjct: 116 YQSQLESMLNINLVGFKQVIVLGTAGYTPFMEL----RTPDRRKLVEDLLS------LSV 165

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           + + ++L             + S+   +  Q+  L +++N    + I      I E   K
Sbjct: 166 ISEMDKL-------------NKSYVRGVNQQLDTLSMQVNHI-QQQIATHQRFIDEQRAK 211

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
            N  + +         +  ++  A   +   ++ +
Sbjct: 212 ANQNNARYKEIYDSHVETAKNIKAQLMQLQAEIAE 246


>gi|85093572|ref|XP_959722.1| hypothetical protein NCU02402 [Neurospora crassa OR74A]
 gi|28921172|gb|EAA30486.1| predicted protein [Neurospora crassa OR74A]
          Length = 1192

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 3/87 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +  L           VG+NG GK+ IL AI+    G+     R  S   
Sbjct: 124 LESITCINFMCHTRLHCELGPLLNFIVGENGSGKSAILTAITLCLGGKASSTNRGGSLKS 183

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISI 90
             + G+             +      +
Sbjct: 184 FVKEGTEKAVLIVKIKNQGQDAYRHEL 210


>gi|315149508|gb|EFT93524.1| DNA repair protein RecN [Enterococcus faecalis TX0012]
          Length = 557

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 32/262 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + + A+  ++ +   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
              +L G  D   D+   ++ E
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE 254


>gi|225389521|ref|ZP_03759245.1| hypothetical protein CLOSTASPAR_03269 [Clostridium asparagiforme
          DSM 15981]
 gi|225044422|gb|EEG54668.1| hypothetical protein CLOSTASPAR_03269 [Clostridium asparagiforme
          DSM 15981]
          Length = 120

 Score = 49.1 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          M   ++  +L I  F++   + +       I VG N  GKT++L+A S +  G
Sbjct: 1  MERSMQFTYLRIQNFKSIRDMEIKDIEAALILVGKNNTGKTSVLDAFSAVCGG 53


>gi|329667058|gb|AEB93006.1| DNA repair protein RecN [Lactobacillus johnsonii DPC 6026]
          Length = 559

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 83/259 (32%), Gaps = 55/259 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L++ F  + T+ +G+ G GK+ I++A+S L   R     + +++ R
Sbjct: 2   LVELDIKNFAIIKTLKVRFQEKMTVLIGETGAGKSIIIDAVSLLLGSR-----AQSEMIR 56

Query: 67  IGSP--------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VI 110
            G                          G+    D  I       +    ++IN     I
Sbjct: 57  SGEEKAVITGLFVLSEQKDLIEDLCEKYGLPFEDDQLIISRELTHKGRNVVRINGQLTTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+ ++L           +         R +D +    +P  ++ +  ++       
Sbjct: 117 NVLREIGRNLVDIHGQNDQQILMDQD-----RQIDLIDNYAEPEFKKELHSYK------- 164

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                   D      + +Q+                 L     E  QK++    + +   
Sbjct: 165 -------VDFEKWRHLTSQL---------------RKLREDAQEIAQKQDILEFQNNELE 202

Query: 231 FLDGKFDQSFCALKEEYAK 249
             D         L+EE+ +
Sbjct: 203 SADLNDPNEDEKLEEEFNE 221


>gi|323335674|gb|EGA76957.1| Smc5p [Saccharomyces cerevisiae Vin13]
          Length = 989

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 6/120 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + + +F  Y            + +G NG GK+  + A+     G+     R     D
Sbjct: 42  IIKIRLQDFVTYTLTEFNLSPSLNMIIGPNGSGKSTFVCAVCLGLAGKPEYIGRSKKVED 101

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             + G      +   +          I+     D +++  +I     R  D L    ++S
Sbjct: 102 FIKNGQD---VSKIEITLKNSPNVTDIEYIDARDETIKITRIITRSKRRSDYLINDYQVS 158


>gi|315124282|ref|YP_004066286.1| predicted ATP-dependent endonuclease of the OLD family
          [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|315018004|gb|ADT66097.1| predicted ATP-dependent endonuclease of the OLD family
          [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 168

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI  + I  FR+YA+  +V     T FVG N +GK+ ILEA+
Sbjct: 1  MKIIQVKIKNFRSYANEVIVDFEDLTAFVGKNDIGKSTILEAL 43


>gi|315127019|ref|YP_004069022.1| SMC protein [Pseudoalteromonas sp. SM9913]
 gi|315015533|gb|ADT68871.1| SMC protein [Pseudoalteromonas sp. SM9913]
          Length = 1133

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 17/152 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++    ++ F  Q T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLSTIKLAGFKSFVEPTKIPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-----------INDV 108
             DV   GS +    + A VE +       +     D   V   +           +N  
Sbjct: 61  MTDVIFNGSTNRKPISQASVELIFDNTQGKLPNTFADRNQVAIKRLVTRDGQSLYFLNGS 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMER 140
             R  D +      + L P    I     + R
Sbjct: 121 KCRKRD-ITDIFLGTGLGPRSYAIIEQGMISR 151


>gi|256788610|ref|ZP_05527041.1| DNA repair protein [Streptomyces lividans TK24]
          Length = 580

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 76/248 (30%), Gaps = 41/248 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     + A +
Sbjct: 9   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADAAL 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETR---DDRSVRCLQINDVVIRVVDELNKHLR 121
            RIG+ +      R+      A      E     DD ++   +      R    L     
Sbjct: 59  VRIGAKNA-VVEGRIAVPGDAAVAVRAEEAGAELDDGALLISRTVSAEGRSRAHLGGRSV 117

Query: 122 ISWLVPSM-DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
              ++  + D + +            +    D           +L R R  L      D 
Sbjct: 118 PVGMLAELADELVA------------VHGQTDQ------QGLLKLNRQRQAL------DR 153

Query: 181 SWCSSIEAQMAELGVKINIARV--EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
               ++   +A+        R     +  +++   E  Q+ +     L     ++ +  +
Sbjct: 154 YAGDAVAGPLAKYAEAYRRLRAVVRELEEITTRARERAQEADLLRYGLDEIAAVEPRAGE 213

Query: 239 SFCALKEE 246
                +E 
Sbjct: 214 DVELAEEA 221


>gi|256830611|ref|YP_003159339.1| SMC domain-containing protein [Desulfomicrobium baculatum DSM 4028]
 gi|256579787|gb|ACU90923.1| SMC domain protein [Desulfomicrobium baculatum DSM 4028]
          Length = 533

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 65/196 (33%), Gaps = 17/196 (8%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +      + L F     +  G++G GK+ IL A+ F+   R      
Sbjct: 1   MLETLRIRNLALID-----DVELEFCPGLNVLTGESGAGKSFILRALDFILGER-----I 50

Query: 61  YADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            AD+ R G   +       ++G E    + ++ E         L IND +          
Sbjct: 51  AADLVRPGREKALVEAVFHLDGEE----LFLRRELSAKNGRSRLFINDDLGSQERLAELR 106

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRNRLLTEGY 177
            R+        +            LD  +    I    R      + ++  +  +     
Sbjct: 107 PRLLMHTSQHGQQRLLSPEHHAEILDAFLADPQILVSQREAREALQAILARKAEVQRRMA 166

Query: 178 FDSSWCSSIEAQMAEL 193
                   +E Q+AE+
Sbjct: 167 GLLERREFLEFQLAEI 182


>gi|254364175|ref|ZP_04980221.1| hypothetical protein TBHG_01262 [Mycobacterium tuberculosis str.
          Haarlem]
 gi|134149689|gb|EBA41734.1| hypothetical protein TBHG_01262 [Mycobacterium tuberculosis str.
          Haarlem]
          Length = 875

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L
Sbjct: 1  MKLHRLALTNYRGIAHRDVEFPDHGVVVVCGANEIGKSSMVEALDLL 47


>gi|170722765|ref|YP_001750453.1| chromosome segregation protein SMC [Pseudomonas putida W619]
 gi|169760768|gb|ACA74084.1| chromosome segregation protein SMC [Pseudomonas putida W619]
          Length = 1162

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 101/320 (31%), Gaps = 36/320 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIRLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   GS S    + A +E +   ++            I +  +  R       +N  
Sbjct: 61  MTDVIFNGSTSRKPVSQASIELIFDNSETTLLGEYAAYAEISIRRKVTRDGQNTYYLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRM 159
             R  D +      + L P    I               E R F++        +++ R 
Sbjct: 121 KCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEELRNFIEEAAG--ISKYKERR 177

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-----GVKINIARVEMINALSSLIME 214
            + E  +R     L      +     +E Q+  L       +           L + +  
Sbjct: 178 RETESRIRRTQENLARL---TDLRDELERQLERLHRQAQAAEKYREYKAQERQLKARLAA 234

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
              ++    ++   +   D          ++  A    +  +             +    
Sbjct: 235 LRWRDLDERVRQRESVIGDQDVAHEALVAEQRNADASIERLRDGHHELSERFNQVQGRFY 294

Query: 275 VDYCDKAITIAHGSTGEQKV 294
               D A        G+Q++
Sbjct: 295 SVAGDIARVEQSIQHGQQRL 314


>gi|58383287|ref|YP_194859.1| hypothetical protein pU302L_053 [Salmonella enterica subsp.
          enterica serovar Typhimurium]
 gi|157418162|ref|YP_001481234.1| hypothetical protein APECO1_O1CoBM79 [Escherichia coli APEC O1]
 gi|169546502|ref|YP_001711915.1| hypothetical protein pVM01_p066 [Escherichia coli]
 gi|256367838|ref|YP_003108395.1| hypothetical protein XCV [Escherichia coli]
 gi|300824709|ref|ZP_07104815.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331652541|ref|ZP_08353552.1| conserved hypothetical protein [Escherichia coli M718]
 gi|331685901|ref|ZP_08386478.1| conserved hypothetical protein [Escherichia coli H299]
 gi|37962766|gb|AAR05713.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
          Typhimurium]
 gi|62550900|emb|CAH64823.1| hypothetical protein [uncultured bacterium]
 gi|88770212|gb|ABD51649.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|168831054|gb|ACA34835.1| unknown [Escherichia coli]
 gi|228480775|gb|ACQ42102.1| hypothetical protein XCV [Escherichia coli]
 gi|300522799|gb|EFK43868.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|312914817|dbj|BAJ38791.1| putative ATP-dependent endonuclease of the OLD family [Salmonella
          enterica subsp. enterica serovar Typhimurium str.
          T000240]
 gi|327536735|gb|AEA95567.1| hypothetical protein pSD853_88_103 [Salmonella enterica subsp.
          enterica serovar Dublin]
 gi|331049647|gb|EGI21713.1| conserved hypothetical protein [Escherichia coli M718]
 gi|331076854|gb|EGI48075.1| conserved hypothetical protein [Escherichia coli H299]
          Length = 521

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          I  L +  F+ +  L L F     I VGDN  GK+ IL A+  +      R 
Sbjct: 4  ITRLMLQNFKKFPELDLRFSNDRNILVGDNESGKSTILLALDLVLSDSRHRV 55


>gi|32450573|gb|AAH54173.1| Unknown (protein for IMAGE:6875131) [Xenopus laevis]
          Length = 348

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          + IK + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS     
Sbjct: 1  MYIKQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSH 55


>gi|12849495|dbj|BAB28365.1| unnamed protein product [Mus musculus]
          Length = 233

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 54  IESIQLRNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLK 113

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
              + G  S              ADISI L  R D + R     D ++
Sbjct: 114 GFVKAGQNS--------------ADISITLRNRGDDAFRANVYGDSIV 147


>gi|24374427|ref|NP_718470.1| SMC family protein [Shewanella oneidensis MR-1]
 gi|24348999|gb|AAN55914.1|AE015728_3 SMC family protein [Shewanella oneidensis MR-1]
          Length = 1145

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 85/225 (37%), Gaps = 32/225 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ F    +  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPFLQALSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND 107
            +DV   GS +            F +   R+ G     +  I ++ +  R       +N 
Sbjct: 61  MSDVIFNGSSARKPVSVAGVELVFENKEGRLAGQYASYE-EISVKRQVSRDGESWYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P            R+      + R F++        R++ R
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAG--ISRYKER 176

Query: 159 MIDFE-RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
             + E R+   R  L   G   S     ++ ++++        R 
Sbjct: 177 RRETESRIRHTRENLERLGDIRSELGKQLD-KLSQQAKAATQYRE 220



 Score = 39.9 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 67/216 (31%), Gaps = 43/216 (19%)

Query: 156  RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
               + + + ++      L        W   ++             R ++I  L ++ +  
Sbjct: 902  LAALSEQQIVLAQIIDSLPSDGQPDKWQRDLDQ-----------IRQKII-RLGAINLAA 949

Query: 216  VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM----------DSMS---- 261
            +++      + S     D   ++    L+E   K   + R            D       
Sbjct: 950  IEEFEQQSERKSYLDHQDEDLNKGLATLEEAIRKIDKETRTRFKATFDAVNEDLGRLFPK 1009

Query: 262  ----RRTLIGPHRSDLIVDY--------CDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
                 R  +     DL+             K  TI   S GE+ +  + +  A  RL   
Sbjct: 1010 VFGGGRAYLALTEDDLLETGVTIMAQPPGKKNSTIHLLSGGEKALTALSLVFAIFRL--- 1066

Query: 310  TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                AP  +LDE+ A LD+       R++ ++   +
Sbjct: 1067 --NPAPFCMLDEVDAPLDDANVERFCRLLKEMSQSV 1100


>gi|70943153|ref|XP_741658.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56520174|emb|CAH82363.1| hypothetical protein PC000350.05.0 [Plasmodium chabaudi chabaudi]
          Length = 648

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 25/44 (56%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          KI  L I  F N+ +L L F+    I +G NG GK+ I +A++ 
Sbjct: 35 KIIKLRIRNFLNHENLELSFNCYKNIIIGKNGRGKSAIAQAVAV 78


>gi|126175901|ref|YP_001052050.1| SMC domain-containing protein [Shewanella baltica OS155]
 gi|125999106|gb|ABN63181.1| SMC domain protein [Shewanella baltica OS155]
          Length = 881

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 7   IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           +  +++  FR + ++       +  +F G NG GKT++ EA+ F   G
Sbjct: 86  LCHISLGPFRGFRNVEDFDLSRRIVLFYGPNGSGKTSLCEALEFALLG 133


>gi|82705825|ref|XP_727129.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23482825|gb|EAA18694.1| SMC domain N terminal domain, putative [Plasmodium yoelii yoelii]
          Length = 398

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 12/83 (14%)

Query: 1   MTNRI---------KIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL 50
           MT+ +          IK+L +  F++Y +  +    ++ T  +G NG GK+NI++ I F+
Sbjct: 188 MTSSMISSKESELCFIKYLTVCNFKSYENENIIGPFSKFTAIIGPNGSGKSNIMDCICFV 247

Query: 51  SP--GRGFRRASYADVTRIGSPS 71
                +  R  +   +       
Sbjct: 248 LGIDNKYLRIKNLRKLIYHKENE 270


>gi|322708199|gb|EFY99776.1| condensin subunit Cut3 [Metarhizium anisopliae ARSEF 23]
          Length = 1495

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 15/116 (12%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +RI +  L ++ F++YA    +  F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 214 SRIVLTHLILNNFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 270

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA-----DISIKLETRDDRSVRCLQIN 106
                   +    +      +  VE              I   ++   S +  + N
Sbjct: 271 MRQGKISALIHNSAQHPNLEYCEVEVHFQEVIDKPTGHEIIPNSKLIISRKAFRNN 326


>gi|315026961|gb|EFT38893.1| DNA repair protein RecN [Enterococcus faecalis TX2137]
          Length = 557

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 101/288 (35%), Gaps = 37/288 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + + A+  ++ R   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTRAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              +L G  D   D+   ++ E     L     +DS  +        +
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE-----LASIESLDSEYKTLSDTVQNA 275


>gi|307129652|ref|YP_003881668.1| recombination and repair protein [Dickeya dadantii 3937]
 gi|306527181|gb|ADM97111.1| recombination and repair protein [Dickeya dadantii 3937]
          Length = 553

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 86/263 (32%), Gaps = 38/263 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F A  ++  G+ G GK+  ++A+      R       A + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQAGMSVITGETGAGKSIAIDALGLCLGNRS-----DASMVR 56

Query: 67  IGSPSFFS-------------TFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  PGASRADICARFSLADTPAALRWLEHNQLDDNNECLLRRVISADGRSRAF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDFERLMRGR 169
            + EL +HL       +   +       +R  LD       +    R+    + +  R  
Sbjct: 116 QLRELGQHLIQLHGQHAHQLLLK--PEHQRHLLDAYADESQLLSAMRQIWQQWHQSCREL 173

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
            +L        +    ++ Q+ EL            N  +    EY ++ +  + +L+ +
Sbjct: 174 AQLQQATIEREARRELLQYQLKEL------------NEFAPQSGEY-EQIDVEYKRLANS 220

Query: 230 GFLDGKFDQSFCALKEEYAKKLF 252
           G L     Q+   L E   + L 
Sbjct: 221 GQLMSLSQQTLQILSESEDQNLL 243


>gi|32470927|ref|NP_863920.1| hypothetical protein RB457 [Rhodopirellula baltica SH 1]
 gi|32443072|emb|CAD71594.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 392

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I  + I  F++   + + F    T+ VG +G GK+N +EA+ FL
Sbjct: 2  IHEIRIQNFKSIQDVTVEFSD-VTVLVGRSGTGKSNFVEAVRFL 44


>gi|229546831|ref|ZP_04435556.1| DNA repair protein RecN [Enterococcus faecalis TX1322]
 gi|307290053|ref|ZP_07569977.1| DNA repair protein RecN [Enterococcus faecalis TX0411]
 gi|229307996|gb|EEN73983.1| DNA repair protein RecN [Enterococcus faecalis TX1322]
 gi|306498895|gb|EFM68389.1| DNA repair protein RecN [Enterococcus faecalis TX0411]
 gi|315029674|gb|EFT41606.1| DNA repair protein RecN [Enterococcus faecalis TX4000]
          Length = 557

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 95/262 (36%), Gaps = 32/262 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + + A+  ++ R   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTRAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
              +L G  D   D+   ++ E
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE 254


>gi|222110046|ref|YP_002552310.1| DNA repair protein Recn [Acidovorax ebreus TPSY]
 gi|221729490|gb|ACM32310.1| DNA repair protein RecN [Acidovorax ebreus TPSY]
          Length = 554

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 16/117 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +S+F    SL L   A  T+  G+ G GK+ +++A+  +   R     + + V
Sbjct: 1   MALRRIALSDFVIVRSLELDLHAGFTVLTGETGAGKSILIDALQLVLGAR-----ADSGV 55

Query: 65  TRIGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI 110
            R G+              +  A ++      D ++ L    D   +    IN +  
Sbjct: 56  IREGAQRTDVCAEFDGGTIALAAWLDEAGFPRDDTLLLRRTVDVQGKSRAWINGIPA 112


>gi|156741588|ref|YP_001431717.1| SMC domain-containing protein [Roseiflexus castenholzii DSM 13941]
 gi|156232916|gb|ABU57699.1| SMC domain protein [Roseiflexus castenholzii DSM 13941]
          Length = 909

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 81/244 (33%), Gaps = 3/244 (1%)

Query: 21  LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-VTRIG-SPSFFSTFAR 78
           L L F  +  + +G  GVGK+ +LE I +      +   +Y + + +           A 
Sbjct: 299 LSLDFSPEMNVLIGGRGVGKSALLEVIRYALDLPAYAPTAYREGLVKHALGSGGKVVLAF 358

Query: 79  VEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
            + +    +   ++E   D   R  +    V +  ++ L +     +         +  +
Sbjct: 359 YQVVRPGIERHYRIERVWDEQPRVFEGERSVSLSPLEVLGEREAPLFFGQREIYEVTQSA 418

Query: 138 MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
             RRR LD ++         ++      ++   R + E     +    +E ++ E+  +I
Sbjct: 419 RLRRRLLDEIIGRTAEMQLGQVKRITEELQRNARTILEHQERLAQRKDLEKRLQEIEHQI 478

Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            + +   I           + E                + +    L E +   L   ++ 
Sbjct: 479 ALYQQYGITQKLQQATALARDEERLKRAHEQLSQAQADWQEVQQRLAEHWTNALAGLKQA 538

Query: 258 DSMS 261
           DS+ 
Sbjct: 539 DSVQ 542


>gi|50542914|ref|XP_499623.1| YALI0A00616p [Yarrowia lipolytica]
 gi|49645488|emb|CAG83543.1| YALI0A00616p [Yarrowia lipolytica]
          Length = 1189

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 11/118 (9%)

Query: 5   IKIKFLNISEFRNYASL-RLV-FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y +L  +  F  +  + VG NG GK+N   A+   LS          
Sbjct: 1   MYIKQIRIQGFKSYKNLVEIDPFSPRFNVVVGRNGSGKSNFFAAVRFVLSDAYNHLNKEE 60

Query: 62  A-DVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              +   GS  S  +  A VE +   +D       R       + I   +    DE +
Sbjct: 61  RAALIHEGSGMSGTTMSAFVEIIFDNSD------RRLPTGGETVTIRRTIGSKKDEYS 112



 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 89/269 (33%), Gaps = 38/269 (14%)

Query: 91   KLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI-----FSGLSMERRRFLD 145
            KL      + R       + +  + +   +R   ++P    +       G  M+  R + 
Sbjct: 908  KLSKFAKAAERVAAKRQALEQRREHVQAKIREIGILPDDAFLDVSAQSDGDMMQEFREVS 967

Query: 146  RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
              +      +R+ +  F    + R+RLL+          SIE  ++ L  + + A     
Sbjct: 968  DELKKFGHVNRKALEQFATFSKDRDRLLSRRQNLMESAESIEELISTLNDQKDRAIKRTF 1027

Query: 206  NALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
              +S    E  Q+   P  K  L        DQ+  +         F+  + +      L
Sbjct: 1028 QQVSKEFSEVFQQL-VPRGKGQLVIERRALDDQNPDSYTGVAINVSFNSTENEQQRVEQL 1086

Query: 266  IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
             G                      G++ +  + +  A        +  AP  L DEI A+
Sbjct: 1087 SG----------------------GQKSLCALALIFA-----IQRSDPAPFYLFDEIDAN 1119

Query: 326  LDEDKRNALFRIVTDI-----GSQIFMTG 349
            LD+  R A+ ++++ I      +Q   T 
Sbjct: 1120 LDDQYRTAVAQVISQIANAPQPTQFICTT 1148


>gi|332285467|ref|YP_004417378.1| ATP-dependent OLD family endonuclease [Pusillimonas sp. T7-7]
 gi|330429420|gb|AEC20754.1| ATP-dependent OLD family endonuclease [Pusillimonas sp. T7-7]
          Length = 635

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +++  + I +FR    L +  +  + + +G+N  GK+ +L+AI   + GR
Sbjct: 1  MQLTSIKIKDFRCIEDLHISVN-GNAVIIGENNAGKSAVLDAIKI-ALGR 48


>gi|260427600|ref|ZP_05781579.1| DNA repair protein RecN [Citreicella sp. SE45]
 gi|260422092|gb|EEX15343.1| DNA repair protein RecN [Citreicella sp. SE45]
          Length = 551

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + ++ L I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++
Sbjct: 1  MMLRALEIRDMLIIDRLDLSFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAEL 55

Query: 65 TRIGSPSFFSTFA 77
           R G+     T  
Sbjct: 56 VRSGAAQGEVTAV 68


>gi|260462099|ref|ZP_05810343.1| DNA repair protein RecN [Mesorhizobium opportunistum WSM2075]
 gi|259031959|gb|EEW33226.1| DNA repair protein RecN [Mesorhizobium opportunistum WSM2075]
          Length = 557

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M  R+ I+ + +        L + F    ++  G+ G GK+ +L+A+S     RG     
Sbjct: 1  MLARLSIRDIVL-----IEKLDIDFQPGLSVLTGETGAGKSILLDALSLALGARG----- 50

Query: 61 YADVTRIGSPSFFSTFA 77
           A + R G+        
Sbjct: 51 DASLVRHGAAQGQVIAV 67


>gi|258625219|ref|ZP_05720132.1| DNA repair protein RecN [Vibrio mimicus VM603]
 gi|258582509|gb|EEW07345.1| DNA repair protein RecN [Vibrio mimicus VM603]
          Length = 554

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +        +
Sbjct: 117 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHADLLKATRHAY-QNWRQASNQL 173

Query: 167 RG 168
           + 
Sbjct: 174 KQ 175


>gi|311740656|ref|ZP_07714483.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
          ATCC 33035]
 gi|311304176|gb|EFQ80252.1| conserved hypothetical protein [Corynebacterium pseudogenitalium
          ATCC 33035]
          Length = 861

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSP----GRGFRR 58
          ++I  L ++  R    L L    +    +  G+N  GK+ I+EA+  +      GR  R 
Sbjct: 1  MRIHRLELTNVRGIEHLVLDELPETGVVVIHGENEAGKSTIVEALDVVLTEKHSGRSKRI 60

Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADI 88
           S   V   G        A +   E    I
Sbjct: 61 RSLQPV---GKDVAPEITAELSVGEYRFRI 87


>gi|227499075|ref|ZP_03929212.1| DNA repair protein recN [Acidaminococcus sp. D21]
 gi|226904524|gb|EEH90442.1| DNA repair protein recN [Acidaminococcus sp. D21]
          Length = 565

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 71/223 (31%), Gaps = 31/223 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           + FL + +F     +R+ F     +F G+ G GK+ +++A+  +  GR      R  + A
Sbjct: 2   LTFLEVQQFALIDKVRIGFAPGFNVFTGETGAGKSILIDALGIVLGGRAPSDAVRTGADA 61

Query: 63  DVTR--IGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVR-CLQIND--VVIRVVDEL 116
              +         S  A + E      D ++ L  R     +    +ND  V ++ +  L
Sbjct: 62  YQIQAVFDVTGNHSVEALLSELGLSAEDGTLFLRRRVSAQGKSQAFVNDTQVPVKTLARL 121

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              L           +    ++        ++   DP     +  ++       +     
Sbjct: 122 GALLVDIHGQHENQTLLRPGAVL------AILHHYDPELAPTLKAYQEAFDAAQKG---- 171

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
                  S  E +        N  R E +  L   + E    +
Sbjct: 172 ---RETLSYWEGK--------NEHREEELARLEDELKEIDAAQ 203


>gi|78188127|ref|YP_378465.1| ATPase [Chlorobium chlorochromatii CaD3]
 gi|78170326|gb|ABB27422.1| ATPase [Chlorobium chlorochromatii CaD3]
          Length = 565

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  + I  FR      L    Q  + +G N  GKT +L+AIS  + G
Sbjct: 2  ITKIQIKNFRQIRDQTLEL-KQVAVVIGPNNGGKTTLLQAISLFALG 47


>gi|332883061|gb|EGK03345.1| DNA repair protein RecN [Dysgonomonas mossii DSM 22836]
          Length = 554

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 68/207 (32%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-- 64
           ++ L I  +    SL + F+   ++  G+ G GK+ IL A+S +   R       AD+  
Sbjct: 2   LRSLYIKNYALIDSLEIDFEPGFSVITGETGAGKSIILGALSLILGQR-------ADMKA 54

Query: 65  TRIGSPSFF------------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            + G                   F   +G++   D  I              IND  + +
Sbjct: 55  IKQGESKCVIEGSFDVSAYDLRAFCEEKGIDYDPDSYILRREILSTGKSRAFINDSPVSL 114

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFE---RLMR 167
            D      ++  +      +    +  + + +D +    D   ++R+    ++   + + 
Sbjct: 115 TDLKELGSQLIDIHSQHQNLLLSDTRFQMQVVDALAGNKDLLSKYRQAFHQYKQSEKALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
                + +   +  +       + E  
Sbjct: 175 ELREAVRKSKEEEDYLRFQIESLTEAA 201


>gi|307278964|ref|ZP_07560023.1| DNA repair protein RecN [Enterococcus faecalis TX0860]
 gi|306504351|gb|EFM73562.1| DNA repair protein RecN [Enterococcus faecalis TX0860]
          Length = 557

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 32/262 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + + A+  ++ +   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
              +L G  D   D+   ++ E
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE 254


>gi|262402796|ref|ZP_06079357.1| DNA repair protein RecN [Vibrio sp. RC586]
 gi|262351578|gb|EEZ00711.1| DNA repair protein RecN [Vibrio sp. RC586]
          Length = 554

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +        +
Sbjct: 117 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHADLLKATRHAY-QNWRQASNQL 173

Query: 167 RG 168
           + 
Sbjct: 174 KQ 175


>gi|167756952|ref|ZP_02429079.1| hypothetical protein CLORAM_02501 [Clostridium ramosum DSM 1402]
 gi|167703127|gb|EDS17706.1| hypothetical protein CLORAM_02501 [Clostridium ramosum DSM 1402]
          Length = 551

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 67/209 (32%), Gaps = 34/209 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F     L + F    T+  G+ G GK+ I++AI  L   R       +   +
Sbjct: 2   LESIYIENFAIIDRLEVDFHNHMTVLTGETGAGKSIIIDAIGQLMGNRS-----QSSFIK 56

Query: 67  IGSPSFFSTFARVEG-----MEGLADISIKLETR-------DDRSVRCLQINDVVIRV-- 112
                 F       G     +  L +  I  E +       +  +   ++IN   +    
Sbjct: 57  ADCDECFIEGVFTIGAKSPVLNKLKEYRIDYEDKLVVSKSFNRDNKSIIKINYRNVSKMV 116

Query: 113 --------VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                   +D  ++    S        I          F+++ +  +   +      +  
Sbjct: 117 LQSIMADLIDIHSQFETHSLFDAENHLIILD------EFINQPLKKLFQTYSLAYRTYRE 170

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           + R   + L E   D       +AQ+AE+
Sbjct: 171 INRDYQKALNEELSDE-QLEFYQAQLAEI 198


>gi|152980340|ref|YP_001354576.1| RecN DNA repair protein [Janthinobacterium sp. Marseille]
 gi|151280417|gb|ABR88827.1| RecN DNA repair protein [Janthinobacterium sp. Marseille]
          Length = 548

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 66/178 (37%), Gaps = 22/178 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    ++ L F    ++F G+ G GK+ +++A++    GRG      A V R
Sbjct: 2   LRTLSIRDFVIVDAIELEFAPGFSVFTGETGAGKSILIDALALALGGRG-----DASVVR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLADISIK-----LETRDDRSVR-CLQINDVV--IRVV 113
            G+        FS  A ++      + S +     L    D + R    IN +V     +
Sbjct: 57  EGAAKADITAEFSASAELDAWLAENEFSNEDGGALLRRVIDNTGRSKAFINGIVATATQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGR 169
            EL + L       +   +    +   R  LD      D           +  L R R
Sbjct: 117 RELGEKLVDIHGQHAHQSLLKTDAQ--RVLLDNQAGLQDEVKAVAAAYKTWRALARQR 172


>gi|116748375|ref|YP_845062.1| hypothetical protein Sfum_0931 [Syntrophobacter fumaroxidans MPOB]
 gi|116697439|gb|ABK16627.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB]
          Length = 385

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 10/119 (8%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGF- 56
              ++   + +  +RN+ S+++    Q    VG N  GK+N L+A  FL    S G GF 
Sbjct: 7   ATAVRFTEIELKNWRNFGSVKVTL-PQRVFLVGPNASGKSNFLDAFRFLRDLASVGGGFQ 65

Query: 57  ----RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
               RR   + +  + +         V+           L+ R D   R +   + V+R
Sbjct: 66  AAVRRRGGLSSLRCLAARRIPDIVLSVKIGHEDERWQYSLKFRQDSQGRPMITEEKVVR 124


>gi|329924764|ref|ZP_08279753.1| DNA repair protein RecN [Paenibacillus sp. HGF5]
 gi|328940429|gb|EGG36752.1| DNA repair protein RecN [Paenibacillus sp. HGF5]
          Length = 579

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 73/214 (34%), Gaps = 28/214 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M N + I+ L +       S+ + F     +  G+ G GK+ I++A+  ++ GRG     
Sbjct: 1   MLNTLSIRNLAVV-----ESVDVHFYPGFHVLTGETGAGKSIIIDALGLIAGGRG----- 50

Query: 61  YADVTRIGS-----PSFFSTFA--------RVEGMEGLADISIKLETRDDRSVRCL-QIN 106
            A++ R G       + F   A        +  G+E   +  + +        +   +IN
Sbjct: 51  SAELIRYGCDKAEIEALFELPAEHPVWGTLKKLGVEADPEEHLLIRRELTSQGKSTSRIN 110

Query: 107 DVVIRV--VDELNKHLRISWLVPSMDRIFSGLS--MERRRFLDRMVFAIDPRHRRRMIDF 162
             ++ +  + E+ + L           +            + D+ +     +++    +F
Sbjct: 111 GQLLNLSMLREVGEKLINIHGQHEHQSLLRSEQHMSLLDTYGDKTIGPAKRKYQELYGEF 170

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
            ++ +    L                Q+ E+   
Sbjct: 171 SKVEKELKDLQETSQKAYQMLDMYRFQLEEIAAA 204


>gi|261212090|ref|ZP_05926376.1| DNA repair protein RecN [Vibrio sp. RC341]
 gi|260838698|gb|EEX65349.1| DNA repair protein RecN [Vibrio sp. RC341]
          Length = 554

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +        +
Sbjct: 117 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHADLLKATRHAY-QNWRQASNQL 173

Query: 167 RG 168
           + 
Sbjct: 174 KQ 175


>gi|224541906|ref|ZP_03682445.1| hypothetical protein CATMIT_01079 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525140|gb|EEF94245.1| hypothetical protein CATMIT_01079 [Catenibacterium mitsuokai DSM
           15897]
          Length = 441

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 67/410 (16%), Positives = 135/410 (32%), Gaps = 80/410 (19%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           ++IKI  L +   +   ++++       TI  G+N  GKT++L+AI++   G  ++ +  
Sbjct: 2   DKIKINSLELENVKRIKAVQIEPSENGLTIIGGNNNNGKTSVLDAITWCLGGNKYKPSKP 61

Query: 62  ADVTRIGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-------------- 105
               R GS  P+          +      +  L+  D   ++  Q               
Sbjct: 62  T---REGSYVPASLKVTLSNGIVVERKGKNSALKVTDPTGMKAGQNLLDSFISELALNLP 118

Query: 106 ---NDVVIRVVDELNKHLRISWLVPSMDRI-FSGLSMERRRFLDRMVFAIDPRHRRRMID 161
              N       D L   L I  +   + ++     ++   R     +     ++ + MI 
Sbjct: 119 KFMNSSEKEKADTL---LHIIGIGDELTKLDLKEKAIYNDRLAIGRIADQKLKYAKEMIH 175

Query: 162 F----ERLM-------RGRNRLLTEGYFDS---------SWCSSIEAQMAELGVKINIAR 201
           +     +++       + +  L   G  +          S   +IE +M +L  ++    
Sbjct: 176 YDNVPNKVVSASELIAKQQEMLAINGSNERKRVYLAECKSKSKAIEEKMEDLDKQLKALN 235

Query: 202 VEMINALSSLIMEYVQKENF-----PHIKLSLTGFLDG-----------KFDQSFCALKE 245
            E +  +       ++  N        I+ S+    D            K +Q    LK+
Sbjct: 236 EEYLKVIKERDKATIEVSNLVDNPTDEIEKSIKEIDDINIKVRANLEKKKAEQEANDLKK 295

Query: 246 EYA---KKLFDGRKMDSMSRRT----LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
           EYA   ++L D RK  +         L G    +  + Y ++      GS  +Q      
Sbjct: 296 EYASKSQELEDIRKEKANLLNNADLPLNGLGIKEGKITYLNQEWDNMSGS--QQ------ 347

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           + +A A  I          +L +    +D +        +   G Q   T
Sbjct: 348 LKVATA--ICRKINPNCGFILLDKLEQMDMNTLAEFGAWLKSEGLQAIAT 395


>gi|224088980|ref|XP_002191891.1| PREDICTED: SMC5 protein [Taeniopygia guttata]
          Length = 1050

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 2/105 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYADVT 65
           I  + +  F  Y    +       + VG NG GK++I+ AI     G+  F   +   V+
Sbjct: 17  IVKIFMKNFLTYNVCEVYPGPNLNLIVGGNGTGKSSIVCAICLGLAGKPSFLGRADK-VS 75

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
                        +E  +   +I I  E     +     IN    
Sbjct: 76  LFVKEGCLKAIVEIELFKSPDNIIITREIYVVNNTSVWFINGKPA 120


>gi|254451492|ref|ZP_05064929.1| chromosome segregation protein SMC [Octadecabacter antarcticus 238]
 gi|198265898|gb|EDY90168.1| chromosome segregation protein SMC [Octadecabacter antarcticus 238]
          Length = 1151

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFSRLRLNGFKSFVDPTDLIIQDGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLA--------DISIKLET-RDDRSVRCLQIN 106
             DV   G+      +F      ++  E LA        ++ I     RD  S   + + 
Sbjct: 61  MEDVIFAGASTRPARNFAEVSLVIDNAERLAPAAFNDTDNLEIVRRITRDVGSAYKVGVK 120

Query: 107 DVVIRVVDELNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
           DV  R V  L          P++ R      + +     RRR L+
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQIAELINSKPKARRRILE 165


>gi|325274413|ref|ZP_08140500.1| chromosome segregation protein SMC [Pseudomonas sp. TJI-51]
 gi|324100448|gb|EGB98207.1| chromosome segregation protein SMC [Pseudomonas sp. TJI-51]
          Length = 1162

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 112/330 (33%), Gaps = 56/330 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIRLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS              F ++   + G     A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSSGRKPVSQASIELVFDNSETTLVGEYAAYAEISIRRKVTRDGQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               E R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEELRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +     + +  + +  ++     +  + R+      +    EY  +
Sbjct: 170 ISKYKERRRETENRIRRTQENLARLTDLREEL-----ERQLERLHRQAQAAEKYREYKAQ 224

Query: 219 ENFPHIKLSLTGF--LDGKFDQSFCALKEE---YAKKLFDGRKMDSMSRRTLIGPH---- 269
           E     +LS   +  LD +  Q    + ++   +   + + R  D+   R   G H    
Sbjct: 225 ERQLKARLSALRWRDLDERVRQRESVIGDQGVAHEALVAEQRNADASIERLRDGHHELSE 284

Query: 270 ---RSDLIVDYCDKAITIAHGS--TGEQKV 294
              +           I     S   G+Q++
Sbjct: 285 RFNQVQGRFYSVAGDIARVEQSIQHGQQRL 314


>gi|312958286|ref|ZP_07772807.1| ABC transporter ATP-binding protein [Pseudomonas fluorescens WH6]
 gi|311287350|gb|EFQ65910.1| ABC transporter ATP-binding protein [Pseudomonas fluorescens WH6]
          Length = 371

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + I+ + I  F++  SL L      T   G NG GK+NI +A++F              V
Sbjct: 1  MNIESITIKGFKSLTSLTLEGLTPFTALAGSNGAGKSNITDALAFFGA-----------V 49

Query: 65 TRIGSPSFFSTFA 77
           + G+ +    F 
Sbjct: 50 VKRGAATAIRDFG 62


>gi|215403117|ref|ZP_03415298.1| hypothetical protein Mtub0_05356 [Mycobacterium tuberculosis
          02_1987]
 gi|289745023|ref|ZP_06504401.1| conserved hypothetical protein [Mycobacterium tuberculosis
          02_1987]
 gi|289685551|gb|EFD53039.1| conserved hypothetical protein [Mycobacterium tuberculosis
          02_1987]
          Length = 875

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L
Sbjct: 1  MKLHRLALTNYRGIAHRDVEFPDHGVVVVCGANEIGKSSMVEALDLL 47


>gi|294655197|ref|XP_002770099.1| DEHA2B07920p [Debaryomyces hansenii CBS767]
 gi|199429762|emb|CAR65469.1| DEHA2B07920p [Debaryomyces hansenii]
          Length = 1395

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            R+ I  L ++ F++YA +++   F+A  +  VG NG GK+N+++++ F+   R    R+
Sbjct: 168 PRLVIDKLVLTNFKSYAGVQVIGPFNASFSAVVGPNGSGKSNVIDSMLFVFGFRASKMRQ 227

Query: 59  ASYADVTRIGSPSFFSTFARVE 80
              +++    +      + +V+
Sbjct: 228 GKLSELIHNSAGGNKLDYCQVD 249


>gi|195348595|ref|XP_002040834.1| GM22385 [Drosophila sechellia]
 gi|194122344|gb|EDW44387.1| GM22385 [Drosophila sechellia]
          Length = 1034

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I  +   +F +Y+ +         +  G NG GK+ I+ AI  L  G       R AS 
Sbjct: 15  RIHSVYCKDFVSYSEITFHPKHYLNVLTGPNGSGKSTIVSAI-ILGLGGEPILLDRSASV 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD  +    S  +   RV G              + +      +ND      + L 
Sbjct: 74  ADYIQSNKSSA-TIIVRVYGR-TPNTTETFRRIINSKGSSTFSVNDKDTSKKNFLA 127


>gi|119472127|ref|ZP_01614358.1| hypothetical protein ATW7_11125 [Alteromonadales bacterium TW-7]
 gi|119445147|gb|EAW26440.1| hypothetical protein ATW7_11125 [Alteromonadales bacterium TW-7]
          Length = 663

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 26/48 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          ++++   +  FR+     L+   Q T  +G N  GK+N+L A+  L+P
Sbjct: 1  MRLQSFRVKNFRSINDTGLISTEQLTAILGRNESGKSNLLLALQMLNP 48


>gi|148822495|ref|YP_001287249.1| hypothetical protein TBFG_11304 [Mycobacterium tuberculosis F11]
 gi|253799677|ref|YP_003032678.1| hypothetical protein TBMG_02703 [Mycobacterium tuberculosis KZN
          1435]
 gi|254550284|ref|ZP_05140731.1| hypothetical protein Mtube_07469 [Mycobacterium tuberculosis
          '98-R604 INH-RIF-EM']
 gi|289554933|ref|ZP_06444143.1| hypothetical protein TBXG_02683 [Mycobacterium tuberculosis KZN
          605]
 gi|297633827|ref|ZP_06951607.1| hypothetical protein MtubK4_06879 [Mycobacterium tuberculosis KZN
          4207]
 gi|297730813|ref|ZP_06959931.1| hypothetical protein MtubKR_06964 [Mycobacterium tuberculosis KZN
          R506]
 gi|313658145|ref|ZP_07815025.1| hypothetical protein MtubKV_06979 [Mycobacterium tuberculosis KZN
          V2475]
 gi|148721022|gb|ABR05647.1| hypothetical protein TBFG_11304 [Mycobacterium tuberculosis F11]
 gi|253321180|gb|ACT25783.1| hypothetical protein TBMG_02703 [Mycobacterium tuberculosis KZN
          1435]
 gi|289439565|gb|EFD22058.1| hypothetical protein TBXG_02683 [Mycobacterium tuberculosis KZN
          605]
 gi|328459423|gb|AEB04846.1| hypothetical protein TBSG_02717 [Mycobacterium tuberculosis KZN
          4207]
          Length = 875

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L
Sbjct: 1  MKLHRLALTNYRGIAHRDVEFPDHGVVVVCGANEIGKSSMVEALDLL 47


>gi|15608418|ref|NP_215794.1| hypothetical protein Rv1278 [Mycobacterium tuberculosis H37Rv]
 gi|15840725|ref|NP_335762.1| hypothetical protein MT1315 [Mycobacterium tuberculosis CDC1551]
 gi|31792470|ref|NP_854963.1| hypothetical protein Mb1309 [Mycobacterium bovis AF2122/97]
 gi|121637206|ref|YP_977429.1| hypothetical protein BCG_1337 [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|148661065|ref|YP_001282588.1| hypothetical protein MRA_1286 [Mycobacterium tuberculosis H37Ra]
 gi|215430162|ref|ZP_03428081.1| hypothetical protein MtubE_05673 [Mycobacterium tuberculosis
          EAS054]
 gi|224989681|ref|YP_002644368.1| hypothetical protein JTY_1312 [Mycobacterium bovis BCG str. Tokyo
          172]
 gi|254231535|ref|ZP_04924862.1| hypothetical protein TBCG_01259 [Mycobacterium tuberculosis C]
 gi|260186213|ref|ZP_05763687.1| hypothetical protein MtubCP_09323 [Mycobacterium tuberculosis
          CPHL_A]
 gi|260200328|ref|ZP_05767819.1| hypothetical protein MtubT4_09418 [Mycobacterium tuberculosis
          T46]
 gi|260204532|ref|ZP_05772023.1| hypothetical protein MtubK8_09528 [Mycobacterium tuberculosis
          K85]
 gi|289442716|ref|ZP_06432460.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289446872|ref|ZP_06436616.1| conserved hypothetical protein [Mycobacterium tuberculosis
          CPHL_A]
 gi|289573940|ref|ZP_06454167.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289753354|ref|ZP_06512732.1| conserved hypothetical protein [Mycobacterium tuberculosis
          EAS054]
 gi|294994834|ref|ZP_06800525.1| hypothetical protein Mtub2_10067 [Mycobacterium tuberculosis 210]
 gi|306775446|ref|ZP_07413783.1| hypothetical protein TMAG_01910 [Mycobacterium tuberculosis
          SUMu001]
 gi|306781641|ref|ZP_07419978.1| hypothetical protein TMBG_01329 [Mycobacterium tuberculosis
          SUMu002]
 gi|306783998|ref|ZP_07422320.1| hypothetical protein TMCG_00908 [Mycobacterium tuberculosis
          SUMu003]
 gi|306788362|ref|ZP_07426684.1| hypothetical protein TMDG_01156 [Mycobacterium tuberculosis
          SUMu004]
 gi|306792688|ref|ZP_07430990.1| hypothetical protein TMEG_01174 [Mycobacterium tuberculosis
          SUMu005]
 gi|306797095|ref|ZP_07435397.1| hypothetical protein TMFG_02468 [Mycobacterium tuberculosis
          SUMu006]
 gi|306802975|ref|ZP_07439643.1| hypothetical protein TMHG_00462 [Mycobacterium tuberculosis
          SUMu008]
 gi|306807165|ref|ZP_07443833.1| hypothetical protein TMGG_01840 [Mycobacterium tuberculosis
          SUMu007]
 gi|306967364|ref|ZP_07480025.1| hypothetical protein TMIG_02952 [Mycobacterium tuberculosis
          SUMu009]
 gi|306971556|ref|ZP_07484217.1| hypothetical protein TMJG_03920 [Mycobacterium tuberculosis
          SUMu010]
 gi|307079269|ref|ZP_07488439.1| hypothetical protein TMKG_01775 [Mycobacterium tuberculosis
          SUMu011]
 gi|54040074|sp|P64796|Y1309_MYCBO RecName: Full=Uncharacterized protein Mb1309
 gi|54042505|sp|P64795|Y1278_MYCTU RecName: Full=Uncharacterized protein Rv1278/MT1315
 gi|1480308|emb|CAB00904.1| HYPOTHETICAL PROTEIN Rv1278 [Mycobacterium tuberculosis H37Rv]
 gi|13880915|gb|AAK45576.1| hypothetical protein MT1315 [Mycobacterium tuberculosis CDC1551]
 gi|31618059|emb|CAD94170.1| HYPOTHETICAL PROTEIN Mb1309 [Mycobacterium bovis AF2122/97]
 gi|121492853|emb|CAL71324.1| Hypothetical protein BCG_1337 [Mycobacterium bovis BCG str.
          Pasteur 1173P2]
 gi|124600594|gb|EAY59604.1| hypothetical protein TBCG_01259 [Mycobacterium tuberculosis C]
 gi|148505217|gb|ABQ73026.1| hypothetical protein MRA_1286 [Mycobacterium tuberculosis H37Ra]
 gi|224772794|dbj|BAH25600.1| hypothetical protein JTY_1312 [Mycobacterium bovis BCG str. Tokyo
          172]
 gi|289415635|gb|EFD12875.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289419830|gb|EFD17031.1| conserved hypothetical protein [Mycobacterium tuberculosis
          CPHL_A]
 gi|289538371|gb|EFD42949.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
 gi|289693941|gb|EFD61370.1| conserved hypothetical protein [Mycobacterium tuberculosis
          EAS054]
 gi|308216066|gb|EFO75465.1| hypothetical protein TMAG_01910 [Mycobacterium tuberculosis
          SUMu001]
 gi|308325602|gb|EFP14453.1| hypothetical protein TMBG_01329 [Mycobacterium tuberculosis
          SUMu002]
 gi|308331234|gb|EFP20085.1| hypothetical protein TMCG_00908 [Mycobacterium tuberculosis
          SUMu003]
 gi|308335050|gb|EFP23901.1| hypothetical protein TMDG_01156 [Mycobacterium tuberculosis
          SUMu004]
 gi|308338858|gb|EFP27709.1| hypothetical protein TMEG_01174 [Mycobacterium tuberculosis
          SUMu005]
 gi|308342543|gb|EFP31394.1| hypothetical protein TMFG_02468 [Mycobacterium tuberculosis
          SUMu006]
 gi|308346407|gb|EFP35258.1| hypothetical protein TMGG_01840 [Mycobacterium tuberculosis
          SUMu007]
 gi|308350349|gb|EFP39200.1| hypothetical protein TMHG_00462 [Mycobacterium tuberculosis
          SUMu008]
 gi|308354979|gb|EFP43830.1| hypothetical protein TMIG_02952 [Mycobacterium tuberculosis
          SUMu009]
 gi|308358926|gb|EFP47777.1| hypothetical protein TMJG_03920 [Mycobacterium tuberculosis
          SUMu010]
 gi|308362889|gb|EFP51740.1| hypothetical protein TMKG_01775 [Mycobacterium tuberculosis
          SUMu011]
 gi|323720234|gb|EGB29333.1| hypothetical protein TMMG_01973 [Mycobacterium tuberculosis
          CDC1551A]
 gi|326902899|gb|EGE49832.1| hypothetical protein TBPG_00754 [Mycobacterium tuberculosis
          W-148]
          Length = 875

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L
Sbjct: 1  MKLHRLALTNYRGIAHRDVEFPDHGVVVVCGANEIGKSSMVEALDLL 47


>gi|325854340|ref|ZP_08171539.1| DNA repair protein RecN [Prevotella denticola CRIS 18C-A]
 gi|325484134|gb|EGC87068.1| DNA repair protein RecN [Prevotella denticola CRIS 18C-A]
          Length = 555

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 17/119 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  F     L + F +  ++  G+ G GK+ IL AI  L   R     + +   +
Sbjct: 2   LKHLYIKNFTLIDQLDIAFHSGFSVITGETGAGKSIILGAIGLLLGNR-----ADSRQIK 56

Query: 67  IGS------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G                F +F     ++   + +I              IND  + + 
Sbjct: 57  QGEKKCTIEAHFDLSNYGFESFFEAHDIDFEPEDTIVRREVTATGKSRAFINDTPVSLQ 115


>gi|311105224|ref|YP_003978077.1| RecF protein [Achromobacter xylosoxidans A8]
 gi|310759913|gb|ADP15362.1| RecF protein [Achromobacter xylosoxidans A8]
          Length = 594

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 36/93 (38%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I  + I  F+   ++ L       +  G NG GK++I EA+     G   R     + 
Sbjct: 1  MRINRITIENFQGARAVDLDLRTPAALIAGPNGAGKSSIAEAVRLALLGAPERVGLKKEF 60

Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97
            + +         ++  +G   IS+   T+  
Sbjct: 61 GALVTDGAKVGAIALDLDDGAVGISLPKGTQSG 93


>gi|225871757|ref|YP_002753211.1| RecF/RecN/SMC N-terminal domain protein [Acidobacterium
          capsulatum ATCC 51196]
 gi|225792246|gb|ACO32336.1| RecF/RecN/SMC N-terminal domain protein [Acidobacterium
          capsulatum ATCC 51196]
          Length = 362

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +  + I  FR++ +     +++  + +G NG GK+++L+AI +L
Sbjct: 2  LTRIYIDNFRSFVNFEYRPESK-QLLLGPNGSGKSSLLDAIRYL 44


>gi|225174875|ref|ZP_03728872.1| DNA repair protein RecN [Dethiobacter alkaliphilus AHT 1]
 gi|225169515|gb|EEG78312.1| DNA repair protein RecN [Dethiobacter alkaliphilus AHT 1]
          Length = 552

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/306 (15%), Positives = 89/306 (29%), Gaps = 42/306 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +       +L         +  G+ G GK+ +L A+S L   R     + ++  R
Sbjct: 2   LRLLEVQNLALIDNLAFYPGKGLNVITGETGAGKSMLLGAVSLLLGER-----ATSEAIR 56

Query: 67  IGSPSFF---------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI------- 110
            G  +              A  +       +S+  E R D      +IN  V        
Sbjct: 57  SGQEAAVMQAVFTPPPEILAAHDLTAEEEGLSLCREIRRD-GPNICRINGRVQPLAAMSA 115

Query: 111 --RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRMIDFERLMR 167
             R + +L+   R   L+             +R  LD     A+          + R + 
Sbjct: 116 AGRALVDLHGQNRQQSLL---------DPETQRELLDSFGGEALAKEAAEVRRQYGR-LA 165

Query: 168 GRNRLLTEGYFDSSWC----SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             N+L+T    D +        ++ Q+ E+         E    L+              
Sbjct: 166 ELNKLVTSLGSDDASLAREADFLQFQLTEIEEAALSVEEE--EELTLDFQRLTHARTLLE 223

Query: 224 IKLS-LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
              S  +   +G  + +         K+L     +D      L     +   +    + +
Sbjct: 224 KTASLYSELYEGAMEGAVVDRLGAVEKELASAASLDESLSDILDNVASATQQLTEAAREL 283

Query: 283 TIAHGS 288
              H S
Sbjct: 284 RAYHDS 289


>gi|118619205|ref|YP_907537.1| hydrolase [Mycobacterium ulcerans Agy99]
 gi|118571315|gb|ABL06066.1| conserved hydrolase [Mycobacterium ulcerans Agy99]
          Length = 876

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L
Sbjct: 1  MKLHRLVLTNYRGIAHREIEFPDHGVVVVCGANEIGKSSMIEALDLL 47


>gi|331001419|ref|ZP_08325039.1| conserved domain protein [Parasutterella excrementihominis YIT
          11859]
 gi|329568301|gb|EGG50112.1| conserved domain protein [Parasutterella excrementihominis YIT
          11859]
          Length = 456

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 10/51 (19%)

Query: 7  IKFLNISEFRNYASLR-----LVFDAQHT-----IFVGDNGVGKTNILEAI 47
          +  L +  ++N++S       + F  +       I VG NG GKTN+L AI
Sbjct: 43 VSRLTLFNYKNFSSANGKPFSIHFSPKKNQSPNAILVGINGAGKTNLLTAI 93


>gi|294793730|ref|ZP_06758867.1| DNA repair protein RecN [Veillonella sp. 3_1_44]
 gi|294455300|gb|EFG23672.1| DNA repair protein RecN [Veillonella sp. 3_1_44]
          Length = 554

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 77/203 (37%), Gaps = 21/203 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + + F+   TIF G+ G GK+ +++A S L    G R +S  +  R
Sbjct: 2   LTQMSIRNFALIEQMNISFNDGITIFTGETGAGKSILMDAFSILL---GERASS--EFIR 56

Query: 67  IGSPSF-------FSTFARVEGMEGLADISIK-----LETRDDRSVRCLQI-NDVVI--R 111
            G  SF        +    ++ +    +I I+     L    +R+ +   + ND  I  +
Sbjct: 57  HGKDSFVIDGIFDIANHQSIQDLLESKNIMIEEGQLILSRSFNRNGKSSILANDQPIPLK 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLS-MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            + E+ ++L       S  R+    +  E     ++        +      +++  +  +
Sbjct: 117 ALKEIGQYLADIHGQYSNQRLLDADTHHEYLDTFNKEGKEAYKAYTDAYKMYKQAKQDVD 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAEL 193
            L       +     +  Q+ E+
Sbjct: 177 HLQENMSERARELDMLRYQIDEI 199


>gi|262047716|ref|ZP_06020669.1| DNA repair ATPase [Lactobacillus crispatus MV-3A-US]
 gi|260572001|gb|EEX28568.1| DNA repair ATPase [Lactobacillus crispatus MV-3A-US]
          Length = 831

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 245 EEYAKKLFDGRK-MDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           E + K L   ++ +  ++    +G +      +V    K   + + S G  + +   + L
Sbjct: 701 ERFPKMLKAAQEYLALLTGGRYVGINLDKKLTVVRSDGKKREVKYLSRGTAEQLYFALKL 760

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
           A    I +       +L+D+   + D+ + + + +++  I   +Q+ +    K++ D L 
Sbjct: 761 AFIEQIKDEINLP--ILIDDSFVNFDDQRVSYIDQLLQKISENNQVLIFTAQKNLVDQLG 818



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 62/178 (34%), Gaps = 9/178 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +++K + I  F  +++        Q  +F G N  GK+  +  I  +  G   R  S   
Sbjct: 1   MRLKQIKIINFGQFSNKTFDLPSDQINVFFGANEAGKSTTVAFIKQILFGFHLRSNSSPF 60

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  +        F   +G   L  +  K   +  + +  ++ +  V+      +
Sbjct: 61  FEDYTPLAHVSPMGGNLVFTAADGEYELERLYAK-GDKTKKGILTVKKDGQVVPESVFFD 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           +   I     +   IF+   + +   L +    ++  +     D  +L+  R+    E
Sbjct: 120 QIQNIDGSFYADSFIFNQEMLGQVNSLSQEDL-LERIYYLGAADSSKLLEMRDDFAKE 176


>gi|229918310|ref|YP_002886956.1| DNA sulfur modification protein DndD [Exiguobacterium sp. AT1b]
 gi|229469739|gb|ACQ71511.1| DNA sulfur modification protein DndD [Exiguobacterium sp. AT1b]
          Length = 671

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFD-----AQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          +K+  + ++ ++ Y  S  + FD         +  G NG GKT IL+A+ +L  G+  R 
Sbjct: 1  MKLVRIQLNNYKTYLNSQTINFDTHTDDKNIVLIGGLNGAGKTTILKAVRYLLYGK--RG 58

Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADI 88
           +  +  +  + +  ++F    G E  A +
Sbjct: 59 MTDTEFQQQFTNTINNSFFEQGGREASASL 88


>gi|254474799|ref|ZP_05088185.1| DNA repair protein RecN [Ruegeria sp. R11]
 gi|214029042|gb|EEB69877.1| DNA repair protein RecN [Ruegeria sp. R11]
          Length = 548

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 78/275 (28%), Gaps = 42/275 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRALDIRDILIIDHLELNFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IG------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-----DVV 109
            G            +P   +     E      +  +          +   +N       V
Sbjct: 57  QGAKQGEVMAEFDLAPDHPAHAVLAEAGLPGGETLLLRRVNTAEGRKTAWVNDRRCSGEV 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFER 164
           +R + E    L           + +      R  LD      D                +
Sbjct: 117 LRALSETLLELHGQH---DDRGLLN--PRGHRAMLDEFANLADLLATVRERWTTASRARK 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL------GVKINIARVEM--INALSSLIMEYV 216
            +      L     +  +     A++  L         ++  R EM     +   I    
Sbjct: 172 AVEETRSALEAIRAEEEFLRHAVAELDALDPQPGEDAALDQRRREMQAAERIRGDIQRAH 231

Query: 217 Q--KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
               +           +L+G  DQ+  AL    A 
Sbjct: 232 AILSDGAESALGDAQRWLEGVADQAESALDAPLAA 266


>gi|119593787|gb|EAW73381.1| SMC1 structural maintenance of chromosomes 1-like 2 (yeast),
           isoform CRA_a [Homo sapiens]
          Length = 1260

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 62/155 (40%), Gaps = 16/155 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
            ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3   HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQ 62

Query: 63  DVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKH 119
           ++   G+      S+ A V+ +        K   R  R      + ND ++     + + 
Sbjct: 63  ELI-HGAHIGKPISSSASVKIIYVEESGEEKTFARIIRGGCSEFRFNDNLVSRSVYIAEL 121

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
            +I  +V + + +               ER +F +
Sbjct: 122 EKIGIIVKAQNCLVFQGTVESISVKKPKERTQFFE 156


>gi|28199809|ref|NP_780123.1| chromosome segregation protein [Xylella fastidiosa Temecula1]
 gi|182682561|ref|YP_001830721.1| chromosome segregation protein SMC [Xylella fastidiosa M23]
 gi|28057930|gb|AAO29772.1| chromosome segregation protein [Xylella fastidiosa Temecula1]
 gi|182632671|gb|ACB93447.1| chromosome segregation protein SMC [Xylella fastidiosa M23]
 gi|307578841|gb|ADN62810.1| chromosome segregation protein [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 1167

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 92/281 (32%), Gaps = 23/281 (8%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPATLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             DV   GS +      A VE +   +D +I  E     +   + +   V R    +   
Sbjct: 61  LTDVIFSGSSARKPVAQATVELIFDNSDHTISGEFA---AFNEISVKRTVSRDGSSVYSL 117

Query: 120 LRISWLVPSMDRIFSGLSMERRRFL---DRMVFAI-------DPRHRRRMIDFERLMRGR 169
                    +  +F G  +  R +      M+  I          +        +    R
Sbjct: 118 NGTKCRRRDITDLFLGTGLGPRSYSIIEQGMISQIIEARPEDLRIYLEEAAGISKYKERR 177

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENFPHIKLSL 228
               +           +     E+G ++ ++ R          + E  + ++     L  
Sbjct: 178 KETESRIRHTQENLDRLNDLREEIGKQLEHLKRQARQAEQYQTLQEERRVKDAECKALQF 237

Query: 229 TGFLDGKFD---QSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
              LD +     Q+    +    + L + R+ +     + +
Sbjct: 238 R-ELDTRLQGLRQALLQEETRLQQLLAEQREAEMRIETSRV 277


>gi|66802390|ref|XP_629977.1| structural maintenance of chromosome protein [Dictyostelium
           discoideum AX4]
 gi|60463384|gb|EAL61572.1| structural maintenance of chromosome protein [Dictyostelium
           discoideum AX4]
          Length = 1373

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 94/306 (30%), Gaps = 61/306 (19%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEA-ISFLSPGRGF-RRASY 61
           + I  L I  F++Y  +  +      +  +G NG GK+NI++A I  L       R    
Sbjct: 1   MGISILKIQNFKSYKGNPLIGPFKDFSCVIGPNGRGKSNIMDAIIFVLGHNSSQIRSTKL 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD--RSVRCLQINDV----------- 108
            ++         +     EG +    ++I    + +  R  R +  N             
Sbjct: 61  NELVN---THIVTDKNNNEGGDNSTYVAINFNHQGNNYRFSRKIIGNGSQYFFEQTQVSA 117

Query: 109 --VIRVVDELN---KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
               + + ++               ++ I +    +   F+D +  +   +      +++
Sbjct: 118 EQYQKHLKDIGIDIGTKNFFVFQGDVESIATQNPKQISAFIDDISGSRALKF-----EYD 172

Query: 164 RLM---------------RGRNRLLTEGYFDSSWCSS--------------IEAQMAELG 194
           RL+               + +     +  +   W                  + Q+A+L 
Sbjct: 173 RLLGEKSKCEDDVFASYAKRKTIAFEKEQYKEQWTEVKEYQSMQDRVDSLKTDQQLAKLY 232

Query: 195 VKINIARVE--MINALSSLIMEYVQKENFPHI-KLSLTGFLDGKFDQSFCALKEEYAKKL 251
                 R E  +++     I      E  P   + + T        +    L+++ ++ +
Sbjct: 233 QTTKEMRKEQKLLDESKQQIQSIQSDEMKPLEQQYTQTSKNQASLHKEVVQLEDDISRLI 292

Query: 252 FDGRKM 257
              +K 
Sbjct: 293 KGKKKK 298


>gi|320529112|ref|ZP_08030204.1| DNA repair protein RecN [Selenomonas artemidis F0399]
 gi|320138742|gb|EFW30632.1| DNA repair protein RecN [Selenomonas artemidis F0399]
          Length = 574

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 76/242 (31%), Gaps = 33/242 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L+I  F     + + F A   I  G+ G GK+ +++A   L    G R ++ A   R
Sbjct: 2   LKSLHIRNFALLEEVSVEFGAGLNILTGETGAGKSILIDA---LGAILGQRISTDA--IR 56

Query: 67  IGSPSF-----FSTFARVEGM--------EGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            G  +      FS  A    +            +  + +  +  R+ +  + +N   + V
Sbjct: 57  SGCDALRVEAVFSLHADARELAAVLAEQEIDCEEEELIIVRKVSRAGKSSVLVNGSHVTV 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGLSMER-RRFLDRMVFAIDPRH---RRRMIDFERLM 166
             +  L   L           +    S  R     D  +  +   +        +   L 
Sbjct: 117 GFLRSLAPFLVDIHGQNENLALLREDSQRRLLEDGDGTLAQLLSAYRGVYDAWREKRALR 176

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVK--------INIARVEMINALSSLIMEYVQK 218
             R   + E           E ++++  ++          I R+  +  L     E   +
Sbjct: 177 EERAETVQEIGERLDMLRWQEQEISDADLQEGEDEELETEIRRLSHMEKLVDHASEASAR 236

Query: 219 EN 220
            +
Sbjct: 237 LS 238


>gi|308479769|ref|XP_003102093.1| hypothetical protein CRE_07623 [Caenorhabditis remanei]
 gi|308262473|gb|EFP06426.1| hypothetical protein CRE_07623 [Caenorhabditis remanei]
          Length = 334

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 16/120 (13%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFA 77
                + F+       G NG GKT ++ AI F   G+                SF++   
Sbjct: 15  LKDQTVSFNEGFNTLSGVNGSGKTLLVHAIRFGLNGKS-------------DDSFYTFSG 61

Query: 78  RVE-GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL 136
           RV  G        ++      R  R   I+   +   +E  + L    + P+M  +    
Sbjct: 62  RVTLGFRLPNRSEVEYSKAAGRMTR-YWIDGKEVSS-EEYAEGLEEIEITPNMIGVMVPG 119


>gi|219557174|ref|ZP_03536250.1| hypothetical protein MtubT1_07675 [Mycobacterium tuberculosis
          T17]
          Length = 438

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L
Sbjct: 1  MKLHRLALTNYRGIAHRDVEFPDHGVVVVCGANEIGKSSMVEALDLL 47


>gi|261405960|ref|YP_003242201.1| DNA repair protein RecN [Paenibacillus sp. Y412MC10]
 gi|261282423|gb|ACX64394.1| DNA repair protein RecN [Paenibacillus sp. Y412MC10]
          Length = 579

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 73/214 (34%), Gaps = 28/214 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M N + I+ L +       S+ + F     +  G+ G GK+ I++A+  ++ GRG     
Sbjct: 1   MLNTLSIRNLAVV-----ESVDVHFYPGFHVLTGETGAGKSIIIDALGLIAGGRG----- 50

Query: 61  YADVTRIGS-----PSFFSTFA--------RVEGMEGLADISIKLETRDDRSVRCL-QIN 106
            A++ R G       + F   A        +  G+E   +  + +        +   +IN
Sbjct: 51  SAELIRYGCDKAEIEALFELPAEHPVWSTLKKLGVEADPEEHLLIRRELTSQGKSTSRIN 110

Query: 107 DVVIRV--VDELNKHLRISWLVPSMDRIFSGLS--MERRRFLDRMVFAIDPRHRRRMIDF 162
             ++ +  + E+ + L           +            + D+ +     +++    +F
Sbjct: 111 GQLLNLSMLREVGEKLINIHGQHEHQSLLRSEQHMSLLDTYGDKTIGPAKRKYQELYGEF 170

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
            ++ +    L                Q+ E+   
Sbjct: 171 SKVEKELKDLQETSQKAYQMLDMYRFQLEEIAAA 204


>gi|159128766|gb|EDP53880.1| nuclear condensin complex subunit Smc4, putative [Aspergillus
           fumigatus A1163]
          Length = 1441

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 235 PRLIITHLVLTNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 291

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                   +    +      F  VE      
Sbjct: 292 MRQGKISALIHNSANFPNLPFCEVEVHFQEI 322


>gi|146322765|ref|XP_749352.2| nuclear condensin complex subunit Smc4 [Aspergillus fumigatus
           Af293]
 gi|129556791|gb|EAL87314.2| nuclear condensin complex subunit Smc4, putative [Aspergillus
           fumigatus Af293]
          Length = 1441

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 235 PRLIITHLVLTNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 291

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                   +    +      F  VE      
Sbjct: 292 MRQGKISALIHNSANFPNLPFCEVEVHFQEI 322


>gi|15078763|ref|NP_149513.1| 050L [Invertebrate iridescent virus 6]
 gi|82061651|sp|Q91G49|VF050_IIV6 RecName: Full=Uncharacterized protein 050L
 gi|15042203|gb|AAK81983.1|AF303741_50 050L [Invertebrate iridescent virus 6]
          Length = 1052

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 24/147 (16%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            L +  F+ + +    F  +  +    +G GKT+IL AI F   G G             
Sbjct: 3   ELKLKNFKCFENKTFNFKDEMVLISAPSGSGKTSILSAIKFALWGSG------------- 49

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
                 T  + E M G    S+ L   D    R  + N +V    +E+ +       +  
Sbjct: 50  -----KTLTKGEIMHGKNSCSVTLTYNDITIQRTKRPNRLVYTKQNEIYEDNEAQIYINE 104

Query: 129 MD------RIFSGLSMERRRFLDRMVF 149
                         S+++  +L++M F
Sbjct: 105 YFGNQSHNNFLESSSLDKTEYLEKMAF 131


>gi|71898273|ref|ZP_00680447.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Xylella
           fastidiosa Ann-1]
 gi|71732012|gb|EAO34069.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Xylella
           fastidiosa Ann-1]
          Length = 1167

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 92/281 (32%), Gaps = 23/281 (8%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPATLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             DV   GS +      A VE +   +D +I  E     +   + +   V R    +   
Sbjct: 61  LTDVIFSGSSARKPVAQATVELIFDNSDHTISGEFA---AFNEISVKRTVSRDGSSVYSL 117

Query: 120 LRISWLVPSMDRIFSGLSMERRRFL---DRMVFAI-------DPRHRRRMIDFERLMRGR 169
                    +  +F G  +  R +      M+  I          +        +    R
Sbjct: 118 NGTKCRRRDITDLFLGTGLGPRSYSIIEQGMISQIIEARPEDLRIYLEEAAGISKYKERR 177

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENFPHIKLSL 228
               +           +     E+G ++ ++ R          + E  + ++     L  
Sbjct: 178 KETESRIRHTQENLDRLNDLREEIGKQLEHLKRQARQAEQYQTLQEERRVKDAECKALQF 237

Query: 229 TGFLDGKFD---QSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
              LD +     Q+    +    + L + R+ +     + +
Sbjct: 238 R-ELDTRLQGLRQALLQEETRLQQLLAEQREAEMRIETSRV 277


>gi|306822653|ref|ZP_07456031.1| DNA repair protein RecN [Bifidobacterium dentium ATCC 27679]
 gi|309800840|ref|ZP_07694972.1| DNA repair protein RecN [Bifidobacterium dentium JCVIHMP022]
 gi|304554198|gb|EFM42107.1| DNA repair protein RecN [Bifidobacterium dentium ATCC 27679]
 gi|308222376|gb|EFO78656.1| DNA repair protein RecN [Bifidobacterium dentium JCVIHMP022]
          Length = 576

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 88/303 (29%), Gaps = 42/303 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I       S  +      T   G+ G GK+ +L AI  +S G             
Sbjct: 2   LEELEIRNLGPIRSALIAPAGGMTAITGETGAGKSMLLSAIRLISGGPS-----DGGRVS 56

Query: 67  IGSPSFFSTFARVEGMEGLA------------DISIKLETRDDRSVRC---LQINDVVIR 111
           +G+   ++      G    A            D  + L  +   S R    L    V   
Sbjct: 57  VGAEEAWAQGVFEVGASVAAVAAAREAGFEPEDGELFLSRKVPASGRSRSMLSGRSVPRS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGR 169
           V+D +   L    +    D++       +R FLDR     +    + R      R M  R
Sbjct: 117 VLDSVASEL--VTIHGQTDQLRIASPARQREFLDRYAGNDEAMAAYGRAWEAL-RAMDER 173

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKI---------NIARVEMINALSSLIMEYVQKEN 220
              L+         +    +  E   +I           AR + I        E  Q   
Sbjct: 174 LERLSSQESSMRQQADYLRESIERINRIDPQPGESEELHARRDRIE----NAAEIAQGAA 229

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF----DGRKMDSMSRRTLIGPHRSDLIVD 276
                L  +   D     S   L +  A+ L     +G   D   R   IG   SD++  
Sbjct: 230 TALAALDASQVGDDVDAASAAELIDRAAQALRSIHVEGVFSDLADRLDSIGADLSDVVFT 289

Query: 277 YCD 279
              
Sbjct: 290 LSG 292


>gi|269797988|ref|YP_003311888.1| DNA repair protein RecN [Veillonella parvula DSM 2008]
 gi|269094617|gb|ACZ24608.1| DNA repair protein RecN [Veillonella parvula DSM 2008]
          Length = 554

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 77/203 (37%), Gaps = 21/203 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + + F+   TIF G+ G GK+ +++A S L    G R +S  +  R
Sbjct: 2   LTQMSIRNFALIEQMNISFNDGITIFTGETGAGKSILMDAFSILL---GERASS--EFIR 56

Query: 67  IGSPSF-------FSTFARVEGMEGLADISIK-----LETRDDRSVRCLQI-NDVVI--R 111
            G  SF        +    ++ +    +I I+     L    +R+ +   + ND  I  +
Sbjct: 57  HGKDSFVIDGIFDIANHQSIQDLLESKNIMIEEGQLILSRSFNRNGKSSILANDQPIPLK 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLS-MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            + E+ ++L       S  R+    +  E     ++        +      +++  +  +
Sbjct: 117 ALKEIGQYLADIHGQYSNQRLLDTDTHHEYLDTFNKEGKEAYKAYTDAYKIYKKAKQDVD 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAEL 193
            L       +     +  Q+ E+
Sbjct: 177 HLQENMSERARELDMLRYQIDEI 199


>gi|217968007|ref|YP_002353513.1| SMC domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217337106|gb|ACK42899.1| SMC domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 978

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 6  KIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          K+  L +S F+ Y + R+ F      +  G N  GK+ I EAI+F   G+     S  ++
Sbjct: 3  KLVSLKLSNFKQYQNARIEFPEQGKILIKGKNEAGKSTIFEAIAFALFGKPVYVGSKPNL 62

Query: 65 TRIGSP 70
           R  + 
Sbjct: 63 IRFNAE 68



 Score = 38.7 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 16/105 (15%)

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARL-ISNTTGFAP-ILLLDEISAHLDEDKRNALFRIV 338
            +     S G Q  + + + LA A   +    G  P  + LDE     DED+   L  ++
Sbjct: 870 PLEKNIFSGGTQDQLSLALRLAFAMATLPQDKGVQPKFIFLDEPLGSFDEDRARGLLYLL 929

Query: 339 T-----DIGSQIFMTG---TDKSVFDSLNETAKFMRISNHQALCI 375
           T     +   QIF+      ++ +FD +        ++N Q + I
Sbjct: 930 TQGEVAEFFDQIFVVTHVPIEEELFDEI------YYVNNGQIIKI 968


>gi|218245353|ref|YP_002370724.1| AAA ATPase [Cyanothece sp. PCC 8801]
 gi|218165831|gb|ACK64568.1| AAA ATPase [Cyanothece sp. PCC 8801]
          Length = 369

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 7/52 (13%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT-------IFVGDNGVGKTNILEAISF 49
          +K++ + I  F+ + ++ + F  +         + +GDNG GKT +L+AI+ 
Sbjct: 1  MKVESITIQNFKRFDNIEVSFKNKTLQEVTNRFLILGDNGTGKTTLLQAIAL 52


>gi|170731184|ref|YP_001776617.1| chromosome segregation protein [Xylella fastidiosa M12]
 gi|167965977|gb|ACA12987.1| chromosome segregation protein [Xylella fastidiosa M12]
          Length = 1167

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 92/281 (32%), Gaps = 23/281 (8%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPATLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             DV   GS +      A VE +   +D +I  E     +   + +   V R    +   
Sbjct: 61  LTDVIFSGSSARKPVAQATVELIFDNSDHTISGEFA---AFNEISVKRTVSRDGSSVYSL 117

Query: 120 LRISWLVPSMDRIFSGLSMERRRFL---DRMVFAI-------DPRHRRRMIDFERLMRGR 169
                    +  +F G  +  R +      M+  I          +        +    R
Sbjct: 118 NGTKCRRRDITDLFLGTGLGPRSYSIIEQGMISQIIEARPEDLRIYLEEAAGISKYKERR 177

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENFPHIKLSL 228
               +           +     E+G ++ ++ R          + E  + ++     L  
Sbjct: 178 KETESRIRHTQENLDRLNDLREEIGKQLEHLKRQARQAEQYQTLQEERRVKDAECKALQF 237

Query: 229 TGFLDGKFD---QSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
              LD +     Q+    +    + L + R+ +     + +
Sbjct: 238 R-ELDTRLQGLRQALLQEETRLQQLLAEQREAEMRIETSRV 277


>gi|121593325|ref|YP_985221.1| DNA repair protein RecN [Acidovorax sp. JS42]
 gi|120605405|gb|ABM41145.1| DNA replication and repair protein RecN [Acidovorax sp. JS42]
          Length = 554

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 16/117 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +S+F    SL L   A  T+  G+ G GK+ +++A+  +   R     + + V
Sbjct: 1   MALRRIALSDFVIVRSLELDLHAGFTVLTGETGAGKSILIDALQLVLGAR-----ADSGV 55

Query: 65  TRIGSP----------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI 110
            R G+              +  A ++      D ++ L    D   +    IN +  
Sbjct: 56  IREGAQRTDVCAEFDGGTIALAAWLDEAGFPRDDTLLLRRTVDVQGKSRAWINGIPA 112


>gi|325124294|gb|ADY83817.1| protein used in recombination and DNA repair [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 555

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 93/278 (33%), Gaps = 41/278 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQINDVV- 109
            GS     T                   ++   G   +   +            +N    
Sbjct: 57  YGSDKADITAVFTYQNNSPEAKWLQDHELDDDSGEIHLRRVIFATGRSK---AWVNGRPS 113

Query: 110 -IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLM 166
            +  + EL + L   +   S  ++        + +LDR    +A     R     ++R +
Sbjct: 114 SLSELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDRYNNFYAEANDVREAYSTWQRTI 171

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           R     L           ++E Q+ EL   I     E+         E+ +  +  HI  
Sbjct: 172 RLHQAALDAQATRLQRIGTLEHQIEELEEVIQTDYKEI-------EQEFDRLSHHEHIMQ 224

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
             +  L+   D++   + +E +  +   R+++S + R+
Sbjct: 225 DCSYSLNV-LDEAEQNITQEMSSII---RRLESHAGRS 258


>gi|313901378|ref|ZP_07834858.1| ABC transporter related protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313468355|gb|EFR63789.1| ABC transporter related protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 312

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 22/188 (11%)

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +EA +   G  + + R   +  L   I     + +           L G  D+ +  L+
Sbjct: 91  VLEAVLDGFGELLVLRRQ--LAELEDRIARTASRPSAAAPGPQGEP-LQGLLDR-YGRLQ 146

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           E + ++  DG  M++ +R+ L+G     L     +     A  S G++      + L  A
Sbjct: 147 ERFQQQ--DGYAMEARARQVLLG-----LGFHPDEFERPPASLSGGQR------VRLGLA 193

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKF 364
           R++       P+LLLDE + HLD + R  L   +      + +T  D++  + L ET   
Sbjct: 194 RVLVA---RPPLLLLDEPTNHLDLETREVLEEALARYPGTLVVTSHDRAFLEPLVET--I 248

Query: 365 MRISNHQA 372
             + + + 
Sbjct: 249 WWVEDGRV 256


>gi|302689273|ref|XP_003034316.1| hypothetical protein SCHCODRAFT_81630 [Schizophyllum commune
          H4-8]
 gi|300108011|gb|EFI99413.1| hypothetical protein SCHCODRAFT_81630 [Schizophyllum commune
          H4-8]
          Length = 1192

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK L I  F++Y        F  +H + VG NG GK+N   AI F
Sbjct: 1  MYIKTLTIQGFKSYRDQTQIEPFSPKHNVVVGRNGSGKSNFFAAIRF 47



 Score = 40.3 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 104/298 (34%), Gaps = 21/298 (7%)

Query: 59   ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            A  A++ R+         A  +    L + +  +  +   + R L    ++    DE  +
Sbjct: 866  ALDAEIDRVTERMQKDRAALEKVQNQLLEDTRAMSKQQKTTERYLAKRQMLQNRKDECAR 925

Query: 119  HLRISWLVPSMDRI--FSGLS---MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
            ++R   ++P    +          + +   +   +      +++ +  +    + R++L 
Sbjct: 926  NIRDLGVLPEEAFVRYVDENPNRLVRKLHAVSETLRGFAHVNKKAVEQYTNFTKQRDQLR 985

Query: 174  TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
                       +    + EL   ++  + E I      + +  + E F  +  +  G L 
Sbjct: 986  DRRKE----LDTSAESIQELVDVLDQRKDEAIERTFKQVAKNFE-EVFEGLVPAGRGRLI 1040

Query: 234  GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             +        + +  +       +D+ +  ++     S +     D+ + I   S G++ 
Sbjct: 1041 IQRKIDRDEAEGDEDEDGEGQGGIDNYTGVSIKVSFNSKV-----DEGLRIQQLSGGQKS 1095

Query: 294  VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGT 350
            +V +    A           AP  L DEI A+LD   R A+  ++  +     F+T T
Sbjct: 1096 LVALATVFA-----IQKCDPAPFYLFDEIDANLDAQYRTAVAAMIHSLSGTAQFITTT 1148


>gi|325674268|ref|ZP_08153957.1| DNA repair protein RecN [Rhodococcus equi ATCC 33707]
 gi|325554948|gb|EGD24621.1| DNA repair protein RecN [Rhodococcus equi ATCC 33707]
          Length = 599

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 76/225 (33%), Gaps = 36/225 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I      +S    F    T+  G+ G GKT ++ ++  LS  R     + A   R
Sbjct: 10  LSEIRIDNLGAISSASAQFHEGLTVLTGETGAGKTMVVTSLHLLSGAR-----ADAGRVR 64

Query: 67  IGSPSFFSTF-ARVEGMEGLADISI-------KLETRDDRSVRCLQINDVVIRVVDELNK 118
           +G+          V+G     D  +         E  +D S+  ++      R    L  
Sbjct: 65  VGAARAVVEGRFSVDGSSQQIDREVTRLLESCGAERDEDGSIIAVRTVGGDGRSRAHLGG 124

Query: 119 --HLRISWLVPSMDRIFSGLSMERRRFL--DRMVFAIDPRHRR-----RMIDFERL---- 165
                      +   +      ++ R L  D+ + A+D R         +  + +L    
Sbjct: 125 RSIPAGVLSEFTDPLLTVHGQNDQLRLLRPDQQLAALD-RFADKTVGPLLARYGKLRSEW 183

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
           +  RN LL               ++A+   ++  A +E I+ ++ 
Sbjct: 184 VEARNELLERTSR--------TRELAQEADQLTFA-LEEIDRIAP 219


>gi|293610122|ref|ZP_06692423.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827354|gb|EFF85718.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 555

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 93/278 (33%), Gaps = 41/278 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQINDVV- 109
            GS     T                   ++   G   +   +            +N    
Sbjct: 57  YGSDKADITAVFTYQNNSPEAKWLQDHELDDDSGEIHLRRVIFATGRSK---AWVNGRPS 113

Query: 110 -IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLM 166
            +  + EL + L   +   S  ++        + +LDR    +A     R     ++R +
Sbjct: 114 SLSELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDRYNNFYAEANDVREAYSTWQRTI 171

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           R     L           ++E Q+ EL   I     E+         E+ +  +  HI  
Sbjct: 172 RLHQAALDAQATRLQRIGTLEHQIEELEEVIQTDYKEI-------EQEFDRLSHHEHIMQ 224

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
             +  L+   D++   + +E +  +   R+++S + R+
Sbjct: 225 DCSYSLNV-LDEAEQNITQEMSSII---RRLESHAGRS 258


>gi|269838168|ref|YP_003320396.1| DNA repair protein RecN [Sphaerobacter thermophilus DSM 20745]
 gi|269787431|gb|ACZ39574.1| DNA repair protein RecN [Sphaerobacter thermophilus DSM 20745]
          Length = 596

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 66/210 (31%), Gaps = 27/210 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     LRL F        G+ G GK+ I++A+S +   R       AD  R
Sbjct: 2   LLELAIRNFAIIRDLRLTFHPGLNALTGETGAGKSIIIDALSAVLGAR-----VSADFVR 56

Query: 67  IGSPSFFSTFAR---------------VEGMEGLADISIKLETRDDRSVR-CLQINDVVI 110
            G+   +                     E      D ++ L      + R   +IN   +
Sbjct: 57  TGASGAWVEAVFDVRDLAEREDFRTLLAETGVEPEDGTLILTRDISAAGRSAARINGRTV 116

Query: 111 --RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLM 166
               + +    L           +           LDR    ++   R    + ++ ++ 
Sbjct: 117 TASTLAQFGSLLVDIHGQSEHLSLLR--PAIHVDLLDRYAGTLEERERFAALVHEYHQIR 174

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           R  ++++ +    +     +  Q+ E+   
Sbjct: 175 RQIDQIVADERERAHRMDLLRFQVEEITAA 204


>gi|296126491|ref|YP_003633743.1| ATPase [Brachyspira murdochii DSM 12563]
 gi|296018307|gb|ADG71544.1| putative ATPase [Brachyspira murdochii DSM 12563]
          Length = 347

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS--FLSPGRGFRRASYADV 64
           ++ L I  FR    L++        F+G+    KT++LEAI   F      F     A  
Sbjct: 2   LESLEIENFRGIKKLKIDNFKNINFFIGNANTSKTSLLEAIYTGFSRNALSFLNLLDARD 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
                 +F + F      +  +D +IK+ +  D     L+I
Sbjct: 62  IAKDDDAFEALFY-----DHNSDNTIKINSLIDNEFFELEI 97


>gi|192292403|ref|YP_001993008.1| DNA repair protein RecN [Rhodopseudomonas palustris TIE-1]
 gi|192286152|gb|ACF02533.1| DNA repair protein RecN [Rhodopseudomonas palustris TIE-1]
          Length = 562

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M  R+ I+ + +        L + F     +  G+ G GK+ +L+A +    GRG     
Sbjct: 1  MLARLSIRDIVL-----IERLDIEFSRGLAVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61 YADVTRIGSPSFFSTFARVE 80
           A + R G+       A  +
Sbjct: 51 DAALVRHGAAEHGQVTASFD 70


>gi|154279276|ref|XP_001540451.1| hypothetical protein HCAG_04291 [Ajellomyces capsulatus NAm1]
 gi|150412394|gb|EDN07781.1| hypothetical protein HCAG_04291 [Ajellomyces capsulatus NAm1]
          Length = 1329

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 1   MTNRI-KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG-- 55
           +T  + K+  L +  F++Y     L+F DA     +G NG GK+N ++AISF+   +   
Sbjct: 66  LTATMGKLIRLELFNFKSYKGHHTLLFGDAYFASIIGPNGSGKSNSMDAISFVLGIKSSH 125

Query: 56  FRRASYADVTRIG 68
            R     D+   G
Sbjct: 126 LRSTHLRDLVYRG 138


>gi|119593789|gb|EAW73383.1| SMC1 structural maintenance of chromosomes 1-like 2 (yeast),
           isoform CRA_c [Homo sapiens]
          Length = 1247

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 62/155 (40%), Gaps = 16/155 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
            ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3   HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQ 62

Query: 63  DVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKH 119
           ++   G+      S+ A V+ +        K   R  R      + ND ++     + + 
Sbjct: 63  ELI-HGAHIGKPISSSASVKIIYVEESGEEKTFARIIRGGCSEFRFNDNLVSRSVYIAEL 121

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
            +I  +V + + +               ER +F +
Sbjct: 122 EKIGIIVKAQNCLVFQGTVESISVKKPKERTQFFE 156


>gi|115398574|ref|XP_001214876.1| hypothetical protein ATEG_05698 [Aspergillus terreus NIH2624]
 gi|114191759|gb|EAU33459.1| hypothetical protein ATEG_05698 [Aspergillus terreus NIH2624]
          Length = 1444

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +R+ I  L +  F++YA  ++   F A  +  VG NG GK+N+++A+ F+    GFR + 
Sbjct: 238 SRLMITTLVLMNFKSYAGKQVVGPFHASFSSVVGPNGSGKSNVIDALLFVF---GFRASK 294

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                   +    +      F  VE      
Sbjct: 295 MRQGKISALIHNSANHPNLPFCEVEVHFQEI 325


>gi|301385650|ref|ZP_07234068.1| hypothetical protein PsyrptM_23567 [Pseudomonas syringae pv.
          tomato Max13]
 gi|302059109|ref|ZP_07250650.1| hypothetical protein PsyrptK_03897 [Pseudomonas syringae pv.
          tomato K40]
 gi|302132532|ref|ZP_07258522.1| hypothetical protein PsyrptN_14135 [Pseudomonas syringae pv.
          tomato NCPPB 1108]
 gi|331015458|gb|EGH95514.1| hypothetical protein PLA106_05799 [Pseudomonas syringae pv.
          lachrymans str. M302278PT]
          Length = 65

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + L +  F+ + SL L FDA   + +GDN  GK+++L A+
Sbjct: 26 QKLILQNFKKFDSLMLEFDAGVNVLIGDNETGKSSVLLAL 65


>gi|289669471|ref|ZP_06490546.1| ATPase [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 411

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 9/125 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRA---- 59
           +I++L I  FR    L L      T+ +G NG GK+ + +  +FL+     G RRA    
Sbjct: 12  RIEYLKIQNFRAIRDLELRDITPLTVLLGPNGSGKSTVFDVFAFLAECFELGLRRAWDKR 71

Query: 60  -SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
               ++   GS    +    ++  E    +     + D+RS   + I + +     E  +
Sbjct: 72  GRAKELKTRGSEGPITI--EIKYREPGYPLITYHLSVDERSSSPVVIEEWLQWRRSERGR 129

Query: 119 HLRIS 123
             R  
Sbjct: 130 PFRFL 134


>gi|290580918|ref|YP_003485310.1| DNA repair protein [Streptococcus mutans NN2025]
 gi|254997817|dbj|BAH88418.1| DNA repair protein [Streptococcus mutans NN2025]
          Length = 552

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I  F     + L F+   T+  G+ G GK+ +++A++ +   R     +  DV R
Sbjct: 2   LLEIAIKNFAIIEEISLNFERGMTVLTGETGAGKSIVIDAMNMMLGSR-----ASIDVIR 56

Query: 67  IGS-----PSFFST--------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            GS       FFS             +G+    ++ I+ E          +IN  ++ + 
Sbjct: 57  HGSPKAEIEGFFSVDKNPSLEQLLADQGIAFSDELIIRREI-LQNGRSISRINGQMVNLA 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLD---RMVFAIDPRHRRRMIDFERLMRGRN 170
                   +  +    D+       +  + LD     VF +  +H + + D  R +R R 
Sbjct: 116 TLRAVGQYLVDIHGQHDQEELMRPQKHIQLLDEFGDEVFQVSKQHYQDLFDRYRDLRKRV 175

Query: 171 -RLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMIN 206
                      +    +E Q+ E+           K+   R +++N
Sbjct: 176 LNKRKNEQEHQARIEMLEYQIGEIEAANLQSGEDTKLLKQRDKLMN 221


>gi|239978723|ref|ZP_04701247.1| DNA recombination and repair protein [Streptomyces albus J1074]
          Length = 585

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 67/210 (31%), Gaps = 31/210 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     + A +
Sbjct: 9   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADAAL 58

Query: 65  TRIGSPSFFS-----------TFARVEGMEGLADISIKLETR----DDRSVRCLQINDVV 109
            RIG+ S                 R E      D    L +R    + RS   L    V 
Sbjct: 59  VRIGAKSAVVEGRLALPPDAPVLTRAEEAGAELDDGTLLISRTVSAEGRSRAHLGGRSVP 118

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERL 165
           + ++ EL   L           +       +R+ LDR     V      +        ++
Sbjct: 119 VGLLAELADELVAVHGQTDQQGLLK--PGRQRQALDRYAGEAVSVPLAAYGEAYRRLRKV 176

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
           +   + + T     +     +   + E+  
Sbjct: 177 VAELDEITTRARERAQEADLLRFGLEEISA 206


>gi|119498053|ref|XP_001265784.1| nuclear condensin complex subunit Smc4, putative [Neosartorya
           fischeri NRRL 181]
 gi|119413948|gb|EAW23887.1| nuclear condensin complex subunit Smc4, putative [Neosartorya
           fischeri NRRL 181]
          Length = 1440

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 235 PRLIITHLVLTNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 291

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                   +    +      F  VE      
Sbjct: 292 MRQGKISALIHNSANFPNLPFCEVEVHFQEI 322


>gi|121710752|ref|XP_001272992.1| nuclear condensin complex subunit Smc4, putative [Aspergillus
           clavatus NRRL 1]
 gi|119401142|gb|EAW11566.1| nuclear condensin complex subunit Smc4, putative [Aspergillus
           clavatus NRRL 1]
          Length = 1441

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L ++ F++YA  ++   F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 235 PRLIITHLVLTNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 291

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                   +    +      F  VE      
Sbjct: 292 MRQGKISALIHNSANFPNLPFCEVEVHFQEV 322


>gi|83646806|ref|YP_435241.1| ATPase [Hahella chejuensis KCTC 2396]
 gi|83634849|gb|ABC30816.1| predicted ATPase [Hahella chejuensis KCTC 2396]
          Length = 387

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L+I+ +R+   L +   +   +  G NG GK+N+  A+  L+
Sbjct: 2  LTTLSINNYRSILQLTMPLGS-LNVITGPNGSGKSNLYRALRLLA 45


>gi|121583277|ref|YP_973713.1| hypothetical protein Pnap_4907 [Polaromonas naphthalenivorans
          CJ2]
 gi|120596535|gb|ABM39971.1| conserved hypothetical protein [Polaromonas naphthalenivorans
          CJ2]
          Length = 769

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          ++FL   +FR    ++L  D + TI VG N  GKT++L A+  FL+ G  F
Sbjct: 16 LRFLEFCQFRRLGKVQLDIDKKTTILVGANNSGKTSVLAALRHFLADGSAF 66


>gi|311896058|dbj|BAJ28466.1| hypothetical protein KSE_26540 [Kitasatospora setae KM-6054]
          Length = 452

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++ L ++ F++Y    L      T+  G +G GK+N L+A+  LS  
Sbjct: 25 VEELRLTSFKSYRRAVLPMSP-LTVLYGPSGAGKSNALDALGVLSRL 70


>gi|302338382|ref|YP_003803588.1| chromosome segregation protein SMC [Spirochaeta smaragdinae DSM
           11293]
 gi|301635567|gb|ADK80994.1| chromosome segregation protein SMC [Spirochaeta smaragdinae DSM
           11293]
          Length = 941

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/275 (17%), Positives = 95/275 (34%), Gaps = 30/275 (10%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           + +K + I  F+++A    + F    +  +G NG GK+N++++I   L     +  R   
Sbjct: 1   MFLKSIQIFGFKSFADRSVIEFRDGISALLGPNGCGKSNVVDSIKWVLGEQSTKTLRAEK 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVIR 111
             DV   G+      +       +   +G+  I    I+++ R  RS      IN   ++
Sbjct: 61  MEDVIFNGTENRKALNVAEVTLTLSNDDGVLPIEIPEIEVKRRLHRSGESEYFINSAPVK 120

Query: 112 VVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR----- 158
           + +         + K          +D+I S    ERR   +        + +       
Sbjct: 121 LREVRELFFDTGIGKSSYSIMEQGKIDQILSNKPEERRYIFEEAAGITKYKLKGAEAERK 180

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ---MAELGVKINIARVEM-INALSSLIME 214
           +   E  MR    +L E             +     +L  +I    +++ +  L  ++ +
Sbjct: 181 LQRTEENMRQVEGILREVKRSYDTLKVQSEKTFSYRDLKERIFDLELDIQLLKLKGILDD 240

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
             QKE     K      L    D     L+E   +
Sbjct: 241 QHQKEEKLKEKSQKRDELRSAIDTINNLLEENLDQ 275


>gi|255292605|dbj|BAH89715.1| chromosome segregation protein [uncultured bacterium]
          Length = 800

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 92/275 (33%), Gaps = 42/275 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     +   +     VG NG GK+NI++A+ ++   S  +  R  +
Sbjct: 1   MRLKQIKLAGFKSFVDPTTVTLPSNRCAVVGPNGCGKSNIIDAVRWVMGESSAKQLRGEN 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIK------LETRDDRSVRC-----LQINDV 108
             DV   GS S   +  A +E +    D  I        E    R V         +N  
Sbjct: 61  LTDVIFNGSNSRKPTAIASIELIFDNRDGRIGGEYAAYAEISIRRQVTRDSQSAYFLNGN 120

Query: 109 VIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRFL 144
             R  D                  E     ++    P   R++   +       ERRR  
Sbjct: 121 KCRRRDIMDIFLGTGFGPRSYSIIEQGMINQLVEAKPEDLRVYLEEAAGISKYKERRRET 180

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVE 203
           +  +      +  R+ D    +  + + L      +     ++ +   L  ++  +    
Sbjct: 181 ENRIRH-TRENLSRLNDIREELEKQLKHLDRQAKAAERYRVLKEEERRLTAELYTLKYGA 239

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           +   L+    E    E       +    LD + +Q
Sbjct: 240 LEAELAKHQAEIQSLEVAFEQAAANQQRLDTEIEQ 274


>gi|113969848|ref|YP_733641.1| chromosome segregation protein SMC [Shewanella sp. MR-4]
 gi|113884532|gb|ABI38584.1| chromosome segregation protein SMC [Shewanella sp. MR-4]
          Length = 1142

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 88/248 (35%), Gaps = 42/248 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ F    +  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPFLQALSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND 107
            +DV   GS +            F +   R+ G     +  I ++ +  R       +N 
Sbjct: 61  MSDVIFNGSSARKPVSVAGVELVFENKEGRLAGQYASYE-EISVKRQVSRDGESWYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSM---------DRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P            R+      + R F++             
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +     +      I +++A+   K++          +    E  Q 
Sbjct: 170 ISRYKERRRETENRIRHTRENLERLGDIRSELAKQLEKLSQQ-----AKAAKQYRELKQA 224

Query: 219 ENFPHIKL 226
           E   H +L
Sbjct: 225 ERKTHAEL 232



 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 66/216 (30%), Gaps = 43/216 (19%)

Query: 156  RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
               + + + ++      L        W   ++             R ++I  L ++ +  
Sbjct: 899  LAALSEQQIVLAQIVDSLPADGHPDKWQRDLDQ-----------IRQKII-RLGAINLAA 946

Query: 216  VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM----------DSMS---- 261
            +++      + S     D   +     L+E   K   + R            D       
Sbjct: 947  IEEYEQQSERKSYLDHQDEDLNNGLATLEEAIRKIDKETRTRFKTTFDAVNEDLGRLFPK 1006

Query: 262  ----RRTLIGPHRSDLIVDY--------CDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
                 R  +     DL+             K  TI   S GE+ +  + +  A  RL   
Sbjct: 1007 VFGGGRAYLALTEDDLLETGVTIMAQPPGKKNSTIHLLSGGEKALTALSLVFAIFRL--- 1063

Query: 310  TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                AP  +LDE+ A LD+       R++ ++   +
Sbjct: 1064 --NPAPFCMLDEVDAPLDDANVERFCRLLKEMSQSV 1097


>gi|332992912|gb|AEF02967.1| chromosome segregation ATPase [Alteromonas sp. SN2]
          Length = 1155

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 108/310 (34%), Gaps = 54/310 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F  + T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLKKIKLAGFKSFVDPTTIPFPNEMTAVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS +            F ++  R+ G     +++S++     D       +N 
Sbjct: 61  MTDVIFNGSTARKPVGQCSVELFFDNSAGRIGGEYATYSELSVRRLVTRDAQS-TYFLNG 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   R+F   +       ERRR 
Sbjct: 120 TKCRRRDVTDLFLGTGLGPRSYAIIEQGMISRLIESKPQELRVFIEEAAGISKYKERRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
            +  +         R+ D    +  +   L      ++    +  ++ EL  ++   R  
Sbjct: 180 TENRIRHTQDN-LARLNDVRDELGQQLEKLQRQAAAATRYKMLREKVRELKGQLAGIRFL 238

Query: 204 MINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
             N  +  + + +Q  ++    + L   G   G            Y ++L   ++     
Sbjct: 239 KNNEQTENLQQVLQGHQQALDALVLRQHGDEAGML---------AYKEQLAQNKQAADDV 289

Query: 262 RRTLIGPHRS 271
           ++ L     +
Sbjct: 290 QQQLFTTSNA 299



 Score = 37.6 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A  RL       AP  LLDE+ A LD+        +
Sbjct: 1048 GKKNSTIHLLSGGEKALTALSLVFAIFRL-----NPAPFCLLDEVDAPLDDANVGRFCNL 1102

Query: 338  VTDIGSQI-FM 347
            V+++   + F+
Sbjct: 1103 VSEMSQTVQFI 1113


>gi|196013089|ref|XP_002116406.1| hypothetical protein TRIADDRAFT_60486 [Trichoplax adhaerens]
 gi|190580997|gb|EDV21076.1| hypothetical protein TRIADDRAFT_60486 [Trichoplax adhaerens]
          Length = 951

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 68/211 (32%), Gaps = 30/211 (14%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYADVTRIGSPSFF 73
           Y+  +  F  +  +  G NG GK++I+ A+  L          R     D  + G     
Sbjct: 15  YSDCKFRFGPKMNLVAGPNGSGKSSIVCAVC-LGLAGSPSVLGRAKQIKDFIKHGQMEAI 73

Query: 74  STFARVEGMEGLADISIKLETRDDRSVRCLQ-IND--VVIRVVDELNKHLRISW------ 124
                 +  +     S+  +  D +       IN      + V EL K   I        
Sbjct: 74  VEITLFDLPQSTVIKSVFKQNSDMQGSTSNWFINGTQSSKKKVAELVKSFNIQVDNLCQF 133

Query: 125 ---LVPS----MDRIFSGLSMERRRFLDRMVFAIDPR--HRRRMIDFERLMRGRNRLLTE 175
              + P       ++ +  S E     D  +  I+ R  H + +    +++  R +   E
Sbjct: 134 LPQINPELYQKHQKLLNFRSGE-----DNQMKEINKREEHLKDLESKNQVLHQRVQRYRE 188

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
                     +  ++    V+ N  R++  +
Sbjct: 189 REKHQDKLRLL--KIKRCWVEYNNQRMKYFH 217


>gi|332860066|ref|XP_003317352.1| PREDICTED: structural maintenance of chromosomes protein 1B [Pan
           troglodytes]
          Length = 1161

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 62/155 (40%), Gaps = 16/155 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
            ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3   HLELLLVENFKSWRGHQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQ 62

Query: 63  DVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKH 119
           ++   G+      S+ A V+ +        K   R  R      + ND ++     + + 
Sbjct: 63  ELI-HGAHIGKPISSSASVKIIYVEESGEEKTFARIIRGGCSEFRFNDNLVSRSVYIAEL 121

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
            +I  +V + + +               ER +F +
Sbjct: 122 EKIGIIVKAQNCLVFQGTVESISVKKPKERTQFFE 156


>gi|309797291|ref|ZP_07691685.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|308119038|gb|EFO56300.1| conserved hypothetical protein [Escherichia coli MS 145-7]
          Length = 423

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          I  L +  F+ +  L L F     I VGDN  GK+ IL A+  +      R 
Sbjct: 4  ITRLMLQNFKKFPELDLRFSNDRNILVGDNESGKSTILLALDLVLSDSRHRV 55


>gi|268319204|ref|YP_003292860.1| DNA repair protein recN [Lactobacillus johnsonii FI9785]
 gi|262397579|emb|CAX66593.1| DNA repair protein recN [Lactobacillus johnsonii FI9785]
          Length = 559

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 85/259 (32%), Gaps = 55/259 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L++ F  + T+ +G+ G GK+ I++A+S L   R     + +++ R
Sbjct: 2   LVELDIKNFAIIKTLKVRFQEKMTVLIGETGAGKSIIIDAVSLLLGSR-----AQSEMIR 56

Query: 67  IGSP--------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VI 110
            G                +   +     G+    D  I       +    ++IN     I
Sbjct: 57  SGEEKAVITGLFVLSEQKALIESLCEKYGLPFEDDQLIISRELTHKGRNVVRINGQLTTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+ ++L           +         R +D +    +P+ +  +  +E       
Sbjct: 117 NVLREIGRNLVDIHGQNDQQILMDQD-----RQIDLIDNYAEPKFKEELHSYE------- 164

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                   D      + +Q+                 L     E  QK++    + +   
Sbjct: 165 -------ADFEKWRHLTSQL---------------RKLREDAQEIAQKQDILEFQNNELE 202

Query: 231 FLDGKFDQSFCALKEEYAK 249
             D         L+EE+ +
Sbjct: 203 SADLNDPNEDEKLEEEFNE 221


>gi|261368257|ref|ZP_05981140.1| SMC family protein [Subdoligranulum variabile DSM 15176]
 gi|282569772|gb|EFB75307.1| SMC family protein [Subdoligranulum variabile DSM 15176]
          Length = 1185

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 14/126 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRA- 59
           +++K L I  F+++    ++      T  VG NG GK+NI ++I   L        R + 
Sbjct: 1   MRLKELEIQGFKSFPDRTKITIGNGITGVVGPNGSGKSNISDSIRWVLGETSSKQLRGSG 60

Query: 60  SYADVT-----RIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVI 110
              DV        G+  + S    ++  +   D+    + +  R  RS      IN   +
Sbjct: 61  KMEDVIFGGTQTRGAMGYASVVLTIDNSDHGLDMDADEVTIGRRYYRSGESEYSINGQNV 120

Query: 111 RVVDEL 116
           R+ D  
Sbjct: 121 RLKDVY 126


>gi|183984113|ref|YP_001852404.1| hydrolase [Mycobacterium marinum M]
 gi|183177439|gb|ACC42549.1| conserved hydrolase [Mycobacterium marinum M]
          Length = 876

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L
Sbjct: 1  MKLHRLVLTNYRGIAHREIEFPDHGVVVVCGANEIGKSSMIEALDLL 47


>gi|154418105|ref|XP_001582071.1| RecF/RecN/SMC N terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121916304|gb|EAY21085.1| RecF/RecN/SMC N terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 1053

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           I  + +  F  +  + +       + +G NG GK++I+ AI     G         +  +
Sbjct: 30  ILKIKLKNFMAFDKITVCPGPGTNLILGTNGSGKSSIIAAIGIC-FGASPAMINNSSKLS 88

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           +  R G  +       +   + L  I   LE    +     +      + + 
Sbjct: 89  NFIRAGCETAKIRI--ILKADPLITILCTLEKSATKPTWRYRQKKQTFKELS 138


>gi|116749457|ref|YP_846144.1| hypothetical protein Sfum_2026 [Syntrophobacter fumaroxidans MPOB]
 gi|116698521|gb|ABK17709.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB]
          Length = 897

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 70/198 (35%), Gaps = 28/198 (14%)

Query: 170 NRLLT--EGYFDSSWCSSIEA---------QMAELGVKINIARVEMINALSS----LIME 214
           N+LL   E   +    + +E          Q++E  ++I + R+  +  LS         
Sbjct: 514 NKLLRGYEQSQNPEQRAILEQRKEDLLAGKQLSEN-IRIILIRLRQLTTLSKLKQCKAAC 572

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
                +  + +L          ++    +KE   + L       S    + +G    D++
Sbjct: 573 DTTAISKKNSELRRLFITQEFEERLSKEVKEFRLEHLPFKIHERSDRGVSFLGVDL-DIV 631

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
               +K I     S GE + + +  FL     I + +G    ++LD+  + LD  +   +
Sbjct: 632 QRLQNKDI----LSDGEFRALALACFLTEVNTIPHHSG----IILDDPVSSLDHVRTRRV 683

Query: 335 FRIV---TDIGSQIFMTG 349
              +      G Q+ +  
Sbjct: 684 AMRLVQEAKRGGQVIIFT 701


>gi|291613967|ref|YP_003524124.1| SMC domain protein [Sideroxydans lithotrophicus ES-1]
 gi|291584079|gb|ADE11737.1| SMC domain protein [Sideroxydans lithotrophicus ES-1]
          Length = 921

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/328 (12%), Positives = 107/328 (32%), Gaps = 46/328 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++++ ++   +RN+    L  DA      G NG GKT +L+A+  L      ++  
Sbjct: 1   MFRLMELETVHWDYWRNFK---LPLDAPIITISGPNGSGKTTLLDAMRTLLALECSKKRD 57

Query: 61  YADVTRIGSPSFFSTFARVEG---------------MEGLADISIKLETRDDRSVRCLQI 105
           Y    R     F      V+                 +    ++ +++ +     R   I
Sbjct: 58  YKRYVRRNGEDFCWLRGVVDNQCPPGASYRPFRLPYQQDKITLACRIDKKGGDWSRKYWI 117

Query: 106 NDVVIRVV-----------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-------M 147
            D  + +             +  + L  + L P++ R+ S    +  +  +        +
Sbjct: 118 ADGEVSLQEIEQKGEEFGVRDYQRILHSAGLSPAIARVLSLEQGQTDKLCELSHKDLLDL 177

Query: 148 VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           VF +    +  +  +E     +   + E     +   ++   + +   K+   R    + 
Sbjct: 178 VFQVFGD-KEVLERYEEARHHQEHTVRELDAGQNQLEALGNSLEKHEQKV--NRYLEWHR 234

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L+   +    +   P ++  L         ++  A+++E+  K  +   M    +     
Sbjct: 235 LNQERVSLTAEI-RPRLEHHLLQREADNARRTLLAIRKEWRTKHAERASMQLELQAQRQA 293

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVV 295
              + L      ++         +Q+ +
Sbjct: 294 HENAQL------RSQAAQENEQNQQRAL 315



 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 273 LIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           +  ++ DK    +     S G+Q +  + + +A   L+   +     + +DE  AHLD  
Sbjct: 806 VRFNFDDKGFMGMNDGDASGGQQVMKSLILLVA---LMMEESRPGGFVFIDEPFAHLDIV 862

Query: 330 KRNALFRIVTDIGSQIFMTG 349
               + + +    +Q  +T 
Sbjct: 863 NIERVAKFLKATRAQYLLTT 882


>gi|218672534|ref|ZP_03522203.1| chromosome partition protein [Rhizobium etli GR56]
          Length = 223

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFNKLRLVGFKSFVEPTEFIIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  E  A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVALYLDNGERTAPAAFNDADEIQVTRRIEREQGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR+ L+
Sbjct: 121 ESRAKDVQLLFADASTGARSPSMVGQGRIGELIQAKPQARRQLLE 165


>gi|145533158|ref|XP_001452329.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124420017|emb|CAK84932.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1222

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 5/92 (5%)

Query: 1  MTNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
          M   + IK + +  F++Y    R++  +     +G NG GK+N ++AI F+   R    R
Sbjct: 1  MIENM-IKEVILENFKSYYGEHRIICGSHFNSIIGPNGSGKSNFIDAIQFVFGKRATSMR 59

Query: 58 RASYADVTRIGSPSFFSTFARVEGMEGLADIS 89
            + + +   G           EG      I 
Sbjct: 60 CKTVSQLISAGMSEC-RVEVVFEGFVLKRTIR 90


>gi|42519417|ref|NP_965347.1| DNA repair protein RecN [Lactobacillus johnsonii NCC 533]
 gi|41583705|gb|AAS09313.1| DNA repair protein RecN [Lactobacillus johnsonii NCC 533]
          Length = 559

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 83/259 (32%), Gaps = 55/259 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L++ F  + T+ +G+ G GK+ I++A+S L   R     + +++ R
Sbjct: 2   LVELDIKNFAIIKTLKVRFQEKMTVLIGETGAGKSIIIDAVSLLLGSR-----AQSEMIR 56

Query: 67  IGSP--------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VI 110
            G                          G+    D  I       +    ++IN     I
Sbjct: 57  SGEEKAVITGLFVLSEQKDLIEDLCEKYGLPFEDDQLIISRELTHKGRNVVRINGQLTTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+ ++L           +         R +D +    +P  ++ +  +E       
Sbjct: 117 NVLREIGRNLVDIHGQNDQQILMDQD-----RQIDLIDNYAEPEFKKELHSYE------- 164

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                   D      + +Q+                 L     E  QK++    + +   
Sbjct: 165 -------TDFEKWRHLTSQL---------------RKLREDAQEIAQKQDILEFQNNELE 202

Query: 231 FLDGKFDQSFCALKEEYAK 249
             D         L+EE+ +
Sbjct: 203 SADLNDPNEDEKLEEEFNE 221


>gi|88798057|ref|ZP_01113644.1| predicted ATPase [Reinekea sp. MED297]
 gi|88779254|gb|EAR10442.1| predicted ATPase [Reinekea sp. MED297]
          Length = 384

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/361 (14%), Positives = 121/361 (33%), Gaps = 42/361 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I  +R+   L+     Q T+  G NG GK+N+ +++  L+     R      + R
Sbjct: 2   LTAIAIRNYRSILDLKAPLS-QLTVITGPNGSGKSNLYKSLRLLAETA--RGGVVHSLAR 58

Query: 67  IG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G    +F++   ++       ++ ++   R  R         + +    +   +     
Sbjct: 59  EGGLESTFWAGPEKLTRSMKAREVEVQGGPRQSRV-------QLQLGFASDAFSYSITLG 111

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR-NRLLTEGYFDSSWC 183
           L       FS     +R  +        P     +     ++R R  R     +  +   
Sbjct: 112 LPVPSTSAFSLDPEIKREVI-WHGSVCRPA-SSLVERKGPMVRARDGRQWRVIHEHTPSF 169

Query: 184 SSIEAQMAE--LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL------TGFLDGK 235
           +S+   +A+     ++   R E I         +   ++ P  +  L             
Sbjct: 170 TSLFDTLADPVSAPEVFQLR-EFIRQWR-FYDHFRTDKDAPARQPQLGTRTPVLSQDGHD 227

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY------CDKAITIAHGST 289
              +   + E   K L DG   D+    ++     +D             + +T A  S 
Sbjct: 228 LAAAIQTIMEIGDKALLDGSINDAFPGASIHVGSEADGRFTLYFQQEGLLRPLTAAELSD 287

Query: 290 GEQK-VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIF 346
           G  + ++L+   L+             +++L+E    L  D   AL R++  +   +Q++
Sbjct: 288 GTLRYLLLMAALLS--------PRPPSLMILNEPETSLHPDLLPALARLIARVSEETQVW 339

Query: 347 M 347
           +
Sbjct: 340 V 340


>gi|87123352|ref|ZP_01079203.1| DNA repair protein RecN [Synechococcus sp. RS9917]
 gi|86169072|gb|EAQ70328.1| DNA repair protein RecN [Synechococcus sp. RS9917]
          Length = 563

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 29/201 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++++ + + +     SL L F+   T+  G+ G GK+ +L+A+   +   G +  +
Sbjct: 1   MLTGLRLQNIALID-----SLELDFEQGFTVLTGETGAGKSILLDALD--AVLGGLQGTA 53

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGLADISI----------KLETRDDRSVRCLQI 105
              + R           F+  A +       ++ +              +DDR     ++
Sbjct: 54  AQRLIRRDGDRAGIEARFTVQAALRAWLAAHELPLDDDQELVVSRDWRRQDDRLSSRFRV 113

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-------MVFAIDPRHRRR 158
           N VVI     L+    +  L              +RR+LDR        +     +H ++
Sbjct: 114 NGVVINRQQVLSLRPLLIDLTVQGQSQQLSRPGLQRRWLDRLGGPELEELLQRVRQHWQQ 173

Query: 159 MIDFERLMRGRNRLLTEGYFD 179
                  +            D
Sbjct: 174 WRLCSERLEQARADHQRLQHD 194


>gi|325276064|ref|ZP_08141876.1| hypothetical protein G1E_21571 [Pseudomonas sp. TJI-51]
 gi|324098786|gb|EGB96820.1| hypothetical protein G1E_21571 [Pseudomonas sp. TJI-51]
          Length = 769

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          ++ L + +FR    ++L  D + TI VG N  GKT++L A+  FLS G  F
Sbjct: 16 LRLLELCQFRRLGKVQLDIDKKTTILVGANNSGKTSVLAALRHFLSDGSRF 66


>gi|300871571|ref|YP_003786444.1| repair and genetic recombination protein [Brachyspira pilosicoli
           95/1000]
 gi|300689272|gb|ADK31943.1| repair and genetic recombination protein [Brachyspira pilosicoli
           95/1000]
          Length = 575

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 88/254 (34%), Gaps = 40/254 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K+L+I  F     +++ F+    +  G+ G GK+ I+ A+  ++  +G        +  
Sbjct: 2   LKYLDIRNFVLIDKVKINFENGFNVLTGETGAGKSIIISALELITGEKG-----STRMVG 56

Query: 67  IGSPSFFST----------FARVEGMEGLADIS-----IKLETRDDRSVRCLQIN-DVVI 110
           +                    + +  E   +I+     IK E   D   R    N  V +
Sbjct: 57  LNGDRLTVIGTFFLQSSLNIVKNKLKEWNIEITGNELNIKREITKDGKSRSFINNIGVRV 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV-----FAIDPRHRRRMI----D 161
             + EL   +           +F+  +     F D  +       +   H  ++      
Sbjct: 117 AELKELGDLIVDIHGQHEHQSLFN--AANHINFYDAYLNIEDKLQVYREHYNKLTKLIKQ 174

Query: 162 FERLMRGRNRLLTEGYF--------DSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
           +  + + +N +L E  F        + +     E +  +  + +      + +ALS +  
Sbjct: 175 YNEISQNKNTILKEKSFLEYAIEEIEKANLKYNEDEEIKNDIAMMSNAENIASALSIINK 234

Query: 214 EYVQKENFPHIKLS 227
           +    E+  ++KL+
Sbjct: 235 DIFGSESGAYLKLT 248


>gi|254495860|ref|ZP_05108771.1| chromosome segregation SMC protein [Legionella drancourtii
          LLAP12]
 gi|254354926|gb|EET13550.1| chromosome segregation SMC protein [Legionella drancourtii
          LLAP12]
          Length = 1164

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          + +K L ++ F+++    +V F +Q    VG NG GK+NI++A+ ++   S  R  R  S
Sbjct: 1  MHLKQLKLAGFKSFVDPTVVYFPSQLVAVVGPNGCGKSNIIDAVRWVMGESSARNLRGES 60

Query: 61 YADVTRIGSPS 71
            DV   GS +
Sbjct: 61 MTDVIFNGSSN 71


>gi|229513044|ref|ZP_04402510.1| DNA repair protein RecN [Vibrio cholerae TMA 21]
 gi|229525475|ref|ZP_04414880.1| DNA repair protein RecN [Vibrio cholerae bv. albensis VL426]
 gi|229339056|gb|EEO04073.1| DNA repair protein RecN [Vibrio cholerae bv. albensis VL426]
 gi|229349937|gb|EEO14891.1| DNA repair protein RecN [Vibrio cholerae TMA 21]
          Length = 562

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 10  LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 64

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 65  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 124

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +        +
Sbjct: 125 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHADLLKATRHAY-QNWRQASNQL 181

Query: 167 RG 168
           + 
Sbjct: 182 KQ 183


>gi|153007958|ref|YP_001369173.1| chromosome segregation protein SMC [Ochrobactrum anthropi ATCC
           49188]
 gi|151559846|gb|ABS13344.1| chromosome segregation protein SMC [Ochrobactrum anthropi ATCC
           49188]
          Length = 1152

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R S    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPAAYNDADELQVSRRIERESGSVYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|149203433|ref|ZP_01880403.1| hypothetical protein RTM1035_02410 [Roseovarius sp. TM1035]
 gi|149143266|gb|EDM31305.1| hypothetical protein RTM1035_02410 [Roseovarius sp. TM1035]
          Length = 628

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +++  + I  F+       +      T+  G N  GK+ IL+A+ +L
Sbjct: 1  MRLSHIEIENFKGIGTKQSIDLAP-ITLLFGPNSAGKSTILQALHYL 46


>gi|126740310|ref|ZP_01755998.1| DNA repair protein RecN [Roseobacter sp. SK209-2-6]
 gi|126718446|gb|EBA15160.1| DNA repair protein RecN [Roseobacter sp. SK209-2-6]
          Length = 549

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 108/356 (30%), Gaps = 61/356 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRALDIRDLLIIDHLELNFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFST-----------FARVE--GMEGLADISIKL----ETRDDRSVRCLQINDVV 109
            G+                  A +E  G+ G  ++ ++     E R    V   + +  V
Sbjct: 57  QGAAQGEVIAEFSLASDHPAHAVLEEAGLPGGEELILRRVNTAEGRKTAWVNDRRCSGEV 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM--VFAIDPRHRRRMIDF---ER 164
           +R + E    L           + +      R  LD    +  +    R    +     +
Sbjct: 117 LRRLSETLVELHGQH---DDRGLLN--PRGHRTLLDSFANLSELLSATRSAWSNMSLARK 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL------GVKINIARVEM--INALSSLIMEYV 216
            +      L     +  +     +++  L         ++  R +M     +   I+   
Sbjct: 172 AVEATRNALESVRSEEEFLRHSVSELDRLNPETGEDEALDQRRRQMQSAERIRGDILRAH 231

Query: 217 Q--KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
               E           +L+G  + +  A   E    L               G  R    
Sbjct: 232 TLLSEGAETALGEAQRWLEGVANGAEEAGLNEPLSALGRAM---IELGDAQDGVSRILDG 288

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
           +D+    +                  L   R ++   G    +L D+++ H D  +
Sbjct: 289 LDFDPGELEECEA------------RLFEIRALARKYG----VLPDDLATHADSLR 328


>gi|23099329|ref|NP_692795.1| DNA repair and genetic recombination [Oceanobacillus iheyensis
          HTE831]
 gi|22777558|dbj|BAC13830.1| DNA repair and genetic recombination (recombination protein N)
          [Oceanobacillus iheyensis HTE831]
          Length = 564

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +F     + + F+   T+  G+ G GK+ I++AI  L+ GRG       D  R
Sbjct: 2  LTELSIQDFAIIDDISITFNDGLTVLTGETGAGKSIIIDAIQLLAGGRG-----SVDYVR 56

Query: 67 IGSP 70
           G+ 
Sbjct: 57 HGTK 60


>gi|89097285|ref|ZP_01170175.1| predicted ATP-dependent endonuclease of the OLD family protein
           [Bacillus sp. NRRL B-14911]
 gi|89088108|gb|EAR67219.1| predicted ATP-dependent endonuclease of the OLD family protein
           [Bacillus sp. NRRL B-14911]
          Length = 603

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 20/125 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--------- 55
           +K+  L I  F+    L L  +   +I +G N   K+ +LEA+     G           
Sbjct: 1   MKLTKLTIRNFKGIKELALDVE-NISIIIGPNNCSKSTVLEAL--CKFGSSDTMLEKNLY 57

Query: 56  FRRASYADVTRIGSPSFFSTFARVEGME-GLADISIKL-ETRDDRSVRCLQINDVVIRVV 113
            R  +   V      SF +TF+ +   E  L  I   L E      VR +      +   
Sbjct: 58  HRHNTSNPV------SFHATFSDLTDEEINLHGIRASLHEPTGKFIVRAVYRLGEKVERA 111

Query: 114 DELNK 118
            +L+ 
Sbjct: 112 SKLSG 116


>gi|327313525|ref|YP_004328962.1| DNA repair protein RecN [Prevotella denticola F0289]
 gi|326944039|gb|AEA19924.1| DNA repair protein RecN [Prevotella denticola F0289]
          Length = 555

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 17/119 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  F     L + F +  ++  G+ G GK+ IL AI  L   R     + +   +
Sbjct: 2   LKHLYIKNFTLIDQLDIAFHSGFSVITGETGAGKSIILGAIGLLLGNR-----ADSRQIK 56

Query: 67  IGS------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G                F +F     ++   + +I              IND  + + 
Sbjct: 57  QGEKKCTIEAHFDLSNYGFESFFEAHDIDFEPEDTIVRREVTATGKSRAFINDTPVSLQ 115


>gi|307823122|ref|ZP_07653352.1| SMC domain protein [Methylobacter tundripaludum SV96]
 gi|307735897|gb|EFO06744.1| SMC domain protein [Methylobacter tundripaludum SV96]
          Length = 385

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 115/363 (31%), Gaps = 55/363 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + +  F++ A        +    +G NG GK+ +L+AI F++            + R
Sbjct: 2   IKSIAVRNFKSLADFDFKLS-KFNCLIGMNGAGKSTVLQAIDFIAQL--MVGNVDDWLIR 58

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ---INDVVIRVVDELNKHLRIS 123
                 ++       ++  ++I + +E + +     +     N   +    EL +   I 
Sbjct: 59  RE----WTALELNCKLQSKSNIQLAVEYQTENGDEIVWGCSFNRHELLCTSELLEVNGIE 114

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
            L     +   G + +                         ++      L +    +   
Sbjct: 115 QLNVKSKQYRIGENSDTEIAFKYQGS---------------ILSQ----LRDSELPAPIL 155

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
              +             R+  +  LS  ++    + +   + +   G     F  S    
Sbjct: 156 EFRDGM----------RRILSLELLSPNLLRKRARSS--DVDIGPGGEKLSAFLYSIKGE 203

Query: 244 KEEYAKKLFDGR---KMDSMSRRTLIGPHRSDLIVDYCDKAI--TIAHGSTGEQKVVLVG 298
           K ++  KL         D        G  +  +I  +  + I     H + G  +++ + 
Sbjct: 204 KRDFLIKLLQSFYPNMQDYKVSSQQSGWKKLTIIEKFGQQKIETEARHINDGLLRILAI- 262

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
             LA       ++    ++LLDEI   ++ +    L   + +   QI +T     + + L
Sbjct: 263 --LAQ------SSSNHSLILLDEIENGINPEIVEKLVDSLVNSTQQILVTTHSPMILNYL 314

Query: 359 NET 361
            + 
Sbjct: 315 EDA 317


>gi|299756665|ref|XP_002912232.1| smc4 chromosome structural maintenance 4-like protein [Coprinopsis
           cinerea okayama7#130]
 gi|298411778|gb|EFI28738.1| smc4 chromosome structural maintenance 4-like protein [Coprinopsis
           cinerea okayama7#130]
          Length = 569

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
           +R+ I  + +  F++YA    +  F    +  VG NG GK+N ++A+ F+   R    R+
Sbjct: 298 SRLVISKMALVNFKSYAGRQEIGPFHKSFSAIVGPNGSGKSNTIDALLFVFGYRASKMRQ 357

Query: 59  ASYADVTR 66
              +++  
Sbjct: 358 GKVSELIH 365


>gi|260770489|ref|ZP_05879422.1| ATP-dependent endonuclease [Vibrio furnissii CIP 102972]
 gi|260615827|gb|EEX41013.1| ATP-dependent endonuclease [Vibrio furnissii CIP 102972]
 gi|315181576|gb|ADT88489.1| hypothetical protein vfu_B00242 [Vibrio furnissii NCTC 11218]
          Length = 543

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +S FR    L L  D   T  +G+N  GK+++L+A+S + P       S    
Sbjct: 1   MHLERIEVSGFRGIRRLSLTLDE-LTTLIGENTWGKSSLLDALSVMLP-------SNGQP 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            +     F   ++          I +     D +  R  +  ++     ++ N   RI +
Sbjct: 53  YQFELQDFHVDYSISHPQTQDIQIILSFVASDTKEHRAGRYRNLKPVWREDENGQHRIIY 112


>gi|227878117|ref|ZP_03996097.1| DNA repair ATPase [Lactobacillus crispatus JV-V01]
 gi|256850153|ref|ZP_05555583.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|312984134|ref|ZP_07791481.1| conserved hypothetical protein [Lactobacillus crispatus CTV-05]
 gi|227862287|gb|EEJ69826.1| DNA repair ATPase [Lactobacillus crispatus JV-V01]
 gi|256713125|gb|EEU28116.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|310894488|gb|EFQ43563.1| conserved hypothetical protein [Lactobacillus crispatus CTV-05]
          Length = 831

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 245 EEYAKKLFDGRK-MDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           E + K L   ++ +  ++    +G +      +V    K   + + S G  + +   + L
Sbjct: 701 ERFPKMLKAAQEYLALLTGGRYVGINLDKKLTVVRSDGKKREVKYLSRGTAEQLYFALKL 760

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
           A    I +       +L+D+   + D+ + + + +++  I   +Q+ +    K++ D L 
Sbjct: 761 AFIEQIKDEINLP--ILIDDSFVNFDDQRVSYIDQLLQKISENNQVLIFTAQKNLVDQLG 818



 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 62/178 (34%), Gaps = 9/178 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +++K + I  F  +++        Q  +F G N  GK+  +  I  +  G   R  S   
Sbjct: 1   MRLKQIKIINFGQFSNKTFDLPSDQINVFFGANEAGKSTTVAFIKQILFGFHLRSNSSPF 60

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  +        F   +G   L  +  K   +  + +  ++ +  V+      +
Sbjct: 61  FEDYTPLAHVSPMGGNLVFTAADGEYELERLYAK-GDKTKKGILTVKKDGQVVPESVFFD 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           +   I     +   IF+   + +   L +    ++  +     D  +L+  R+    E
Sbjct: 120 QIQNIDGSFYADSFIFNQEMLGQVNSLSQEDL-LERIYYLGAADSSKLLEMRDDFAKE 176


>gi|295837141|ref|ZP_06824074.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|197699487|gb|EDY46420.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 404

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
          +  + +  +R+ A   +    +  + VG NG GK+N L+A
Sbjct: 8  LTRVRLKHYRSIAEADVELG-RLLLLVGPNGSGKSNFLDA 46


>gi|194365375|ref|YP_002027985.1| DNA repair protein RecN [Stenotrophomonas maltophilia R551-3]
 gi|194348179|gb|ACF51302.1| DNA repair protein RecN [Stenotrophomonas maltophilia R551-3]
          Length = 553

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 48/129 (37%), Gaps = 21/129 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+                   +     ++      ++   R D   R   IN   +   
Sbjct: 57  HGAARAELSAEFALDQLQAARQWLADNELDDEEQCQLRRVIRADGGSRS-WINGRPVTLA 115

Query: 112 VVDELNKHL 120
            + +L   L
Sbjct: 116 QLADLAGLL 124


>gi|21220272|ref|NP_626051.1| DNA repair protein [Streptomyces coelicolor A3(2)]
 gi|11134739|sp|Q9S220|RECN_STRCO RecName: Full=DNA repair protein recN; AltName: Full=Recombination
           protein N
 gi|5738496|emb|CAB52844.1| putative DNA repair protein [Streptomyces coelicolor A3(2)]
          Length = 572

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 76/248 (30%), Gaps = 41/248 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     + A +
Sbjct: 1   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADAAL 50

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETR---DDRSVRCLQINDVVIRVVDELNKHLR 121
            RIG+ +      R+      A      E     DD ++   +      R    L     
Sbjct: 51  VRIGAKNA-VVEGRIAVPGDAAVAVRAEEAGAELDDGALLISRTVSAEGRSRAHLGGRSV 109

Query: 122 ISWLVPSM-DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
              ++  + D + +            +    D           +L R R  L      D 
Sbjct: 110 PVGMLAELADELVA------------VHGQTDQ------QGLLKLNRQRQAL------DR 145

Query: 181 SWCSSIEAQMAELGVKINIARV--EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
               ++   +A+        R     +  +++   E  Q+ +     L     ++ +  +
Sbjct: 146 YAGDAVAGPLAKYAEAYRRLRAVVRELEEITTRARERAQEADLLRYGLDEIAAVEPRAGE 205

Query: 239 SFCALKEE 246
                +E 
Sbjct: 206 DVELAEEA 213


>gi|84686349|ref|ZP_01014243.1| DNA repair protein RecN [Maritimibacter alkaliphilus HTCC2654]
 gi|84665532|gb|EAQ12008.1| DNA repair protein RecN [Rhodobacterales bacterium HTCC2654]
          Length = 550

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      AD+ R
Sbjct: 2  LVSLDIRDMLIIDRLELEFRPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RADLVR 56

Query: 67 IGSPSFFSTFA 77
           G+     T  
Sbjct: 57 QGADEGEVTAV 67


>gi|77409327|ref|ZP_00786030.1| DNA repair protein RecN [Streptococcus agalactiae COH1]
 gi|77172059|gb|EAO75225.1| DNA repair protein RecN [Streptococcus agalactiae COH1]
          Length = 552

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 95/278 (34%), Gaps = 37/278 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIEEISLNFETGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASVEVIR 56

Query: 67  IGS-----PSFFST--------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
            G+       FFS              G+E   ++ I+ E          +IN  ++   
Sbjct: 57  HGANKAEIEGFFSIEKNQSLVQLLEENGIELADELIIRREIFQ-NGRSVSRINGQMVNLS 115

Query: 112 --------VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                   +VD   +H +   + P+M  +          F +     I  R++     + 
Sbjct: 116 TLKAVGHYLVDIHGQHDQEELMKPNMHILMLD------EFGNTEFNVIKERYQSLFDAYR 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE--MINALSSLIMEYVQKENF 221
           +L +           + S    +E Q+AE+      +  +  ++     L+      +  
Sbjct: 170 QLRKRVLDKQKNEQENKSRIEMLEFQIAEIESVALKSDEDQTLLKQRDKLMNHKNIADTL 229

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            +  L L             A+ +  A + FD    D 
Sbjct: 230 TNAYLMLDNEEFSSLSNVRSAMNDLMALEEFDREYKDL 267


>gi|71275193|ref|ZP_00651480.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Xylella
           fastidiosa Dixon]
 gi|71164002|gb|EAO13717.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Xylella
           fastidiosa Dixon]
          Length = 1167

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 89/280 (31%), Gaps = 21/280 (7%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPATLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             DV   GS +      A VE +   +D +I  E     +   + +   V R    +   
Sbjct: 61  LTDVIFSGSSARKPVAQATVELIFDNSDHTISGEFA---AFNEISVKRTVSRDGSSVYSL 117

Query: 120 LRISWLVPSMDRIFSGLSMERRRFL---DRMVFAI-------DPRHRRRMIDFERLMRGR 169
                    +  +F G  +  R +      M+  I          +        +    R
Sbjct: 118 NGTKCRRRDITDLFLGTGLGPRSYSIIEQGMISQIIEARPEDLRIYLEEAAGISKYKERR 177

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKENFPHIKLSL 228
               +           +     E+G ++ ++ R          + E  + ++     L  
Sbjct: 178 KETESRIRHTQENLDRLNDLREEIGKQLEHLKRQARQAEQYQTLQEERRVKDAECKALQF 237

Query: 229 TGFLD--GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
                      Q+    +    + L + R+ +     + +
Sbjct: 238 RELDTRLQGLRQALLQEETRLQQLLAEQREAEMRIETSRV 277


>gi|330719238|ref|ZP_08313838.1| DNA repair ATPase [Leuconostoc fallax KCTC 3537]
          Length = 559

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I  F     + L FD   ++  G+ G GK+ I++A++ L+ GR     + +D+ R
Sbjct: 2  LENLVIENFAIIEKVDLQFDKGMSVLTGETGAGKSIIIDALTLLTGGR-----ASSDMVR 56

Query: 67 IGS 69
           G+
Sbjct: 57 HGA 59


>gi|310825040|ref|YP_003957398.1| hypothetical protein STAUR_7816 [Stigmatella aurantiaca DW4/3-1]
 gi|309398112|gb|ADO75571.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 558

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
           +  L +  F++   + + F    T   G N VGK+N+ +AI FL      
Sbjct: 103 LTRLKVEGFKSLLDVDIHFGP-FTCIAGMNAVGKSNLFDAIRFLHLLTRH 151


>gi|310830919|ref|YP_003966020.1| ATPase involved in DNA repair [Paenibacillus polymyxa SC2]
 gi|309250386|gb|ADO59952.1| ATPase involved in DNA repair [Paenibacillus polymyxa SC2]
          Length = 700

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 70/206 (33%), Gaps = 24/206 (11%)

Query: 6   KIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-FRRASYAD 63
           ++  + +  FR +   + + FD     F+GDNG GK++I E ++++  GR    +    +
Sbjct: 12  QLIKVQVQGFRGFKDTVTIPFDLGKNEFLGDNGKGKSSIGELLAWIMTGRNIAGKQKEIN 71

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVVDELNKHLR 121
           V    + S       ++    + ++      R   S   ++++      + ++EL     
Sbjct: 72  VINKDTESVVGILTFMDQDGNMHELE-----RKQTSSMSIKLDYETIPQKRLEELIPMDL 126

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER---------------LM 166
                  M  +    S+ RR   +             M +  R                +
Sbjct: 127 FLSAFNPMFLLSLDESILRRTVANLFPNQTKEEILDEMDESNREVLKDEVFLVDQSNEYL 186

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAE 192
           + +N  L E      W      ++ E
Sbjct: 187 KNQNAELRELDEKRKWLEGYIGKLKE 212


>gi|86170605|ref|XP_966048.1| DNA repair-like protein, putative [Plasmodium falciparum 3D7]
 gi|259551807|sp|C6KSQ6|RAD50_PLAF7 RecName: Full=Probable DNA repair protein RAD50
 gi|46362290|emb|CAG25228.1| DNA repair-like protein, putative [Plasmodium falciparum 3D7]
          Length = 2236

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 74/214 (34%), Gaps = 44/214 (20%)

Query: 7   IKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSP---------GR 54
           ++ + I   R+Y       L F    TI  G+NG GK+ I+E +              G+
Sbjct: 4   LEKIGIQGIRSYNDEDVEILEFATPITIIYGNNGSGKSTIIECLKVSCTGDFPPNAEKGK 63

Query: 55  GF------------RRASYADVT-----RIGSPSFFSTFARVEGMEGLAD--------IS 89
            F            R      +      RIG    ++ F   +  + +          I 
Sbjct: 64  SFLHDPLISNKMNIRGKIDVLLNNYNNKRIGISRSYNLFYSKDKNKKVKHTFRALDNNII 123

Query: 90  IKLETRDDR--SVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI--FSGLSMERRRFLD 145
           IK E  DD   + +C+ IN+ + +++      L         + +  FS     +++F +
Sbjct: 124 IKKEKGDDLIITNKCVDINNHIPKLMGVSKALLENVIFCHHDENLWPFSESIKIKKKFDE 183

Query: 146 RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
                   +    ++  ++ +   N LL    FD
Sbjct: 184 LFGDDHFSKILEELLKCKKYL---NDLLKRKEFD 214


>gi|26990967|ref|NP_746392.1| chromosome segregation protein SMC [Pseudomonas putida KT2440]
 gi|24985991|gb|AAN69856.1|AE016624_7 chromosome segregation SMC protein [Pseudomonas putida KT2440]
          Length = 1162

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 112/330 (33%), Gaps = 56/330 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIRLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS              F ++   + G     A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSSGRKPVSQASIELVFDNSETTLVGEYAAYAEISIRRKVTRDGQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               E R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEELRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +     + +  + +  ++     +  + R+      +    EY  +
Sbjct: 170 ISKYKERRRETENRIRRTQENLARLTDLREEL-----ERQLERLHRQAQAAEKYREYKAQ 224

Query: 219 ENFPHIKLSLTGF--LDGKFDQSFCALKEE---YAKKLFDGRKMDSMSRRTLIGPH---- 269
           E     +LS   +  LD +  Q    + ++   +   + + R  D+   R   G H    
Sbjct: 225 ERQLKARLSALRWRDLDEQVRQRESVIGDQGVSHEALVAEQRNADASIERLRDGHHELSE 284

Query: 270 ---RSDLIVDYCDKAITIAHGS--TGEQKV 294
              +           I     S   G+Q++
Sbjct: 285 RFNQVQGRFYSVAGDIARVEQSIQHGQQRL 314


>gi|21242373|ref|NP_641955.1| chromosome segregation protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21107810|gb|AAM36491.1| chromosome segregation protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 1211

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 85/290 (29%), Gaps = 46/290 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 45  MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 104

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDV 108
             DV   GS +    + A VE +   +D +I  E                      +N  
Sbjct: 105 LTDVIFSGSSARKPVSQATVELIFDNSDHTISGEFASFNEISVKRLVSRDGNSAYYLNGT 164

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI-------DPRHRRRMID 161
             R  D +      + L P    I              M+  I          +      
Sbjct: 165 KCRRRD-ITDLFLGTGLGPRSYSIIEQG----------MISQIIEARPEDLRVYLEEAAG 213

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             +    R    T              ++++L  +I       +  L     +  Q +  
Sbjct: 214 ISKYKERRKETETRIRHTRENLD----RLSDLREEITKQ----LAHLQRQARQAEQYQAL 265

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              +       D ++        +   + L +    +    + LI   R 
Sbjct: 266 QEER----RIKDAEWKALEYRGLDGRLQGLREKLNQEETRLQQLIAEQRD 311


>gi|332701729|ref|ZP_08421817.1| DNA repair ATPase-like protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332551878|gb|EGJ48922.1| DNA repair ATPase-like protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 458

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 11/124 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F  +    +      T+ VG N  GK+ ++E +  L+        +     R
Sbjct: 2   LVKLTLENFLAHGRTVVELGPGLTVLVGPNNSGKSAVVEGLRCLAT-----NPAPRHFIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIK-LETRDDRSVRCLQINDVVIRVVDELNKHL 120
            G+      + FS   RV  +        + L    D+     ++   V + + ++ +  
Sbjct: 57  HGAKLARVEAEFSDGTRVAWLRKEKSAGYELLRPGADKPEEFWKLQGKVPQEIQDILRLN 116

Query: 121 RISW 124
            +  
Sbjct: 117 LVQL 120


>gi|300787878|ref|YP_003768169.1| DNA repair protein RecN [Amycolatopsis mediterranei U32]
 gi|299797392|gb|ADJ47767.1| DNA repair protein RecN [Amycolatopsis mediterranei U32]
          Length = 603

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/232 (18%), Positives = 77/232 (33%), Gaps = 35/232 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRAS 60
           ++I+ L +          L   A  T+  G+ G GKT ++  +  LS GR      R   
Sbjct: 15  MRIQGLGV-----IEDALLELHAGFTVVTGETGAGKTMVVTGLHLLSGGRAEVSKVRTGM 69

Query: 61  YADVT--RI------GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
                  R       G+    +        +G   I+++    D RS   L    V + V
Sbjct: 70  LKAFVEGRFTYSGVEGAERIVTDSGADVDEDGSV-IALRAVAVDGRSRAHLGGRSVPVGV 128

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERR----RFLDRMVFAIDPRHRRRMIDFERL--- 165
           + EL++ L          R+      E+R    RF    V      ++    ++  +   
Sbjct: 129 LAELSEQLIAVHGQNDQLRLLR--PAEQRAVIDRFAGDAVAKPLRAYQEIRSEWLAVIAE 186

Query: 166 MRGRNRLLTEGYFDSSWCS----SIEAQMAELGVKIN----IARVEMINALS 209
           +  R+    E    +         I+A   E G  +     I R+  ++ L 
Sbjct: 187 LTERSTRSREMAQQADLLKHGLTEIDAVAPEPGEDVELTDQIKRLAAVDELR 238


>gi|296840777|ref|ZP_06899349.1| ATP binding protein [Neisseria polysaccharea ATCC 43768]
 gi|296839999|gb|EFH23937.1| ATP binding protein [Neisseria polysaccharea ATCC 43768]
          Length = 247

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 58/178 (32%), Gaps = 23/178 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAI-----SFLSPG 53
           +++K + +     +  L +          +  +F+G+NG GKT +L+++        +  
Sbjct: 1   MQVKSITLHNIGQFKELTIPLAPLTENAPKVAVFIGNNGSGKTTVLKSLVTALSWLPARI 60

Query: 54  RGFRRASYA---DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           R  R        +V   G  S       +         + +L                 +
Sbjct: 61  RSERGRGLDIPEEVIMNGRSSGMVV---LSIENTKKSFTWQLSKAQKGRKNQF---STDL 114

Query: 111 RVVDELNKHLRISWLVPS--MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
           + ++EL    R +          I +   +ER   LD  +   +     ++  ++  +
Sbjct: 115 KDINELADIHRTNLTENEQADLPILAFYPVER-SVLDIPLKIREKHSFEQLNGYDNAL 171


>gi|295113837|emb|CBL32474.1| DNA replication and repair protein RecN [Enterococcus sp. 7L76]
          Length = 557

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 100/288 (34%), Gaps = 37/288 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + +  +  ++ R   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLTVKEKYTRAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              +L G  D   D+   ++ E     L     +DS  +        +
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE-----LASIESLDSEYKTLSDTVQNA 275


>gi|294791869|ref|ZP_06757017.1| DNA repair protein RecN [Veillonella sp. 6_1_27]
 gi|294457099|gb|EFG25461.1| DNA repair protein RecN [Veillonella sp. 6_1_27]
          Length = 554

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 89/244 (36%), Gaps = 34/244 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + + F+   TIF G+ G GK+ +++A S L    G R +S  +  R
Sbjct: 2   LTQMSIRNFALIEQMNISFNDGITIFTGETGAGKSILMDAFSILL---GERASS--EFIR 56

Query: 67  IGSPSF-------FSTFARVEGMEGLADISIK-----LETRDDRSVRCLQI-NDVVI--R 111
            G  SF        +    ++ +    +I I+     L    +R+ +   + ND  I  +
Sbjct: 57  HGKDSFVIDGIFDIANHQSIQDLLESKNIMIEEGQLILSRSFNRNGKSSILANDQPIPLK 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + E+ ++L       S  R+    +     +LD         ++     + ++ +    
Sbjct: 117 ALKEIGQYLADIHGQYSNQRLL--DADTHHEYLDTFNKEGKEAYKAYTDAY-KIYKQA-- 171

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                         ++  M+E   ++++ R + I+ +    +   +  +       L  F
Sbjct: 172 --------KQDVDHLQENMSERARELDMLRYQ-IDEIEDAGLSIGEDISIAEELKRLDSF 222

Query: 232 LDGK 235
               
Sbjct: 223 EHID 226


>gi|226941793|ref|YP_002796867.1| SMC protein [Laribacter hongkongensis HLHK9]
 gi|226716720|gb|ACO75858.1| SMC protein [Laribacter hongkongensis HLHK9]
          Length = 1162

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 100/302 (33%), Gaps = 38/302 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++     +          G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLTHIKLAGFKSFVDPTAIPVPGQLVAVCGPNGCGKSNVIDAVRWVLGESSAKQLRGES 60

Query: 61  YADVTRIGS-----PSFFSTFARVEGMEGLA------DISIKLETRDDRSV-RCLQINDV 108
             DV   GS         S     +  EG A         I ++    R       IN  
Sbjct: 61  MQDVIFNGSSTRKPAGRASVELVFDNSEGRAAGAWGQYGEIAIKRVLTRQGDSSYWINGQ 120

Query: 109 VIRVVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D  +  L                + RI      E R +L+        +++ R  
Sbjct: 121 QVRRRDIADLFLGTGVGTKGYAVIEQGMISRIIEAKPEELRHYLEEAAG--VSKYKERRR 178

Query: 161 DFE-RLMRGRNRLLTEGYFDSSWCSSIEAQM--AELGVKINIARVEMINA--LSSLIMEY 215
           + E RL   R+ L             ++     AE+  +    R ++     L +L+ + 
Sbjct: 179 ETESRLNDTRDNLSRLNDIREELTRQVDRLAGQAEVARQYQTMREQLAQQQNLLALVKKR 238

Query: 216 VQKENFPHIKLSLT------GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
             +E     +  L         L G+  +   A++E          ++D   +  L G  
Sbjct: 239 EAQEGEARAQAELARLETELAMLSGRGSELDAAIEEAREAHFAANEQVDRCQQH-LAGVS 297

Query: 270 RS 271
             
Sbjct: 298 AD 299


>gi|216996018|ref|YP_002333282.1| hypothetical protein pKpn114_03 [Klebsiella pneumoniae]
 gi|215397945|gb|ACJ65223.1| hypothetical protein [Klebsiella pneumoniae]
          Length = 371

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 14/118 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS---------FLSPGRGFR 57
           IK +++  F+ +  L L       I  G N  GKT+IL+AI           L   + FR
Sbjct: 2   IKEISLKNFKCFNELYLKQLKTLNIIAGKNNYGKTSILDAIFCFYDVKNPAVLLNIQAFR 61

Query: 58  RASYADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                ++  I  +  F+ ++           I I+ E  +       + N  +   + 
Sbjct: 62  ----KEMAEINKNKPFWVSYFHDMDTSQKMSIVIRDERSEVTQTYETETNQRLESSLS 115


>gi|23502292|ref|NP_698419.1| DNA repair protein RecN [Brucella suis 1330]
 gi|161619369|ref|YP_001593256.1| DNA repair protein RecN [Brucella canis ATCC 23365]
 gi|254704679|ref|ZP_05166507.1| DNA repair protein RecN [Brucella suis bv. 3 str. 686]
 gi|260566073|ref|ZP_05836543.1| ATP/GTP-binding site-containing protein A [Brucella suis bv. 4 str.
           40]
 gi|261755372|ref|ZP_05999081.1| DNA repair protein RecN [Brucella suis bv. 3 str. 686]
 gi|23348268|gb|AAN30334.1| DNA repair protein RecN [Brucella suis 1330]
 gi|161336180|gb|ABX62485.1| DNA repair protein RecN [Brucella canis ATCC 23365]
 gi|260155591|gb|EEW90671.1| ATP/GTP-binding site-containing protein A [Brucella suis bv. 4 str.
           40]
 gi|261745125|gb|EEY33051.1| DNA repair protein RecN [Brucella suis bv. 3 str. 686]
          Length = 559

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 68/206 (33%), Gaps = 26/206 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L +VF +  ++  G+ G GK+ +L+++S     RG      A + R
Sbjct: 2   LSHLSIRDIVLIERLDIVFRSGLSVLTGETGAGKSILLDSLSLALGARG-----DASLVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRV 112
            G+                   F R  G +   DI ++     D   R    +    + +
Sbjct: 57  HGADQGQVTAVFDVPGNHPARLFLRENGFDDDGDIILRRLQMGDGRTRVFINDQAASVAL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMR 167
           + +L K L           +    +   R  LD          +     +   D E  + 
Sbjct: 117 LRDLGKRLVEIHGQHDDRALI--DTDLHRTLLDAFGGLDAQAMLVRERHKAWRDAESALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
                + +   +  +  S   ++ +L
Sbjct: 175 KHRARVEQAEREGDYLRSSVEELTKL 200


>gi|67536854|ref|XP_662201.1| hypothetical protein AN4597.2 [Aspergillus nidulans FGSC A4]
 gi|40741209|gb|EAA60399.1| hypothetical protein AN4597.2 [Aspergillus nidulans FGSC A4]
 gi|259482571|tpe|CBF77179.1| TPA: nuclear condensin complex subunit Smc4, putative
           (AFU_orthologue; AFUA_2G02170) [Aspergillus nidulans
           FGSC A4]
          Length = 1476

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +R+ I  L ++ F++YA  ++   F A  +  VG NG GK+N+++A+ F+    GFR + 
Sbjct: 243 SRLMITTLVLNNFKSYAGKQVVGPFHASFSSVVGPNGSGKSNVIDALLFVF---GFRASK 299

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                   +    +      F  VE      
Sbjct: 300 MRQGKISALIHNSANHPNLPFCEVEVYFQEI 330


>gi|312874557|ref|ZP_07734582.1| DNA repair protein RecN [Lactobacillus iners LEAF 2053A-b]
 gi|311089948|gb|EFQ48367.1| DNA repair protein RecN [Lactobacillus iners LEAF 2053A-b]
          Length = 559

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 75/210 (35%), Gaps = 33/210 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    SL++ F    T+ +G+ G GK+ I++A+S L   R     +  D+ R
Sbjct: 2   LVELDIQNFAVIKSLKVSFKENMTVLIGETGAGKSIIIDALSLLLGSR-----AQIDMIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDD--------------RSVRCLQINDV--VI 110
            G      T            I + +E                  +    ++IN     I
Sbjct: 57  SGESKAIITGLFSVDDTNKVLIDMCIEAGIPLYDNQLVICRELSIKGRSIVRINGQITTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL----- 165
            ++  L+++L        M  +           ++ +    +   +  +  ++++     
Sbjct: 117 NILKNLSQYLVDIHGQRDMQILMDQDL-----HINLLDNYANNDFKESLCQYQKIYAKWQ 171

Query: 166 -MRGRNRLLTEGYFDSSWC-SSIEAQMAEL 193
            ++ R   + +   + +     +E Q+ EL
Sbjct: 172 EIKQRLSAIRKNAQEIAQKHDILEYQLNEL 201


>gi|291450614|ref|ZP_06590004.1| DNA repair protein recN [Streptomyces albus J1074]
 gi|291353563|gb|EFE80465.1| DNA repair protein recN [Streptomyces albus J1074]
          Length = 577

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 67/210 (31%), Gaps = 31/210 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     + A +
Sbjct: 1   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADAAL 50

Query: 65  TRIGSPSFFS-----------TFARVEGMEGLADISIKLETR----DDRSVRCLQINDVV 109
            RIG+ S                 R E      D    L +R    + RS   L    V 
Sbjct: 51  VRIGAKSAVVEGRLALPPDAPVLTRAEEAGAELDDGTLLISRTVSAEGRSRAHLGGRSVP 110

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERL 165
           + ++ EL   L           +       +R+ LDR     V      +        ++
Sbjct: 111 VGLLAELADELVAVHGQTDQQGLLK--PGRQRQALDRYAGEAVSVPLAAYGEAYRRLRKV 168

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
           +   + + T     +     +   + E+  
Sbjct: 169 VAELDEITTRARERAQEADLLRFGLEEISA 198


>gi|227890282|ref|ZP_04008087.1| DNA repair protein RecN [Lactobacillus johnsonii ATCC 33200]
 gi|227849096|gb|EEJ59182.1| DNA repair protein RecN [Lactobacillus johnsonii ATCC 33200]
          Length = 559

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 85/259 (32%), Gaps = 55/259 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F    +L++ F  + T+ +G+ G GK+ I++A+S L   R     + +++ R
Sbjct: 2   LVELDIKNFAIIKTLKVRFQEKMTVLIGETGAGKSIIIDAVSLLLGSR-----AQSEMIR 56

Query: 67  IGSP--------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VI 110
            G                +   +     G+    D  I       +    ++IN     I
Sbjct: 57  SGEEKAVITGLFVLSEQKALIESLCEKYGLPFEDDQLIISRELTHKGRNVVRINGQLTTI 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            V+ E+ ++L           +         R +D +    +P+ +  +  +E       
Sbjct: 117 NVLREIGRNLVDIHGQNDQQILMDQD-----RQIDLIDNYAEPKFKEELHSYE------- 164

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                   D      + +Q+                 L     E  QK++    + +   
Sbjct: 165 -------ADFEKWRHLTSQL---------------RKLREDAQEIAQKQDILEFQNNELE 202

Query: 231 FLDGKFDQSFCALKEEYAK 249
             D         L+EE+ +
Sbjct: 203 SADLNDPNEDEKLEEEFNE 221


>gi|217034032|ref|ZP_03439454.1| hypothetical protein HP9810_891g36 [Helicobacter pylori 98-10]
 gi|216943540|gb|EEC22991.1| hypothetical protein HP9810_891g36 [Helicobacter pylori 98-10]
          Length = 577

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 94/289 (32%), Gaps = 44/289 (15%)

Query: 5   IKI--KFLNISEFRNYA---------SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           +K+  + L +  FRN           +       +  I VG+N VGK+NILEA+      
Sbjct: 1   MKLYKRVLKLHHFRNLGKKSPTGLLLNSSFEKHGELVILVGENNVGKSNILEAL------ 54

Query: 54  RGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV- 112
           + F   +  D+       +F      + +  L + + +     D S   L+I    +   
Sbjct: 55  KAF---NDTDIKLCNEKDYFKAHKSEDAVLSLEEETSRNNETIDFSCVDLKIRYKEVSKG 111

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL+K L           +F G       F++ ++          +  F +  + + +L
Sbjct: 112 LKELSKTLISYPFS-----VFIGG------FINLIMS------YGILDSFLKFYKEKLKL 154

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                  +     +  ++ +          E+I      + E ++         +   F+
Sbjct: 155 SAFSTKQNHNL--LFKELVKH----LSGSSELIKVFCQCVREIIECNTPNKNHKTNQFFI 208

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
            GK  Q+  A    Y +KL             L      D I    D  
Sbjct: 209 IGKNRQNQLAEIYSYFEKLSANEVKPQDMGDILKKLKSLDEIFKTTDFN 257


>gi|218247492|ref|YP_002372863.1| hypothetical protein PCC8801_2706 [Cyanothece sp. PCC 8801]
 gi|218167970|gb|ACK66707.1| conserved hypothetical protein [Cyanothece sp. PCC 8801]
          Length = 395

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L I  ++ + ++ +    +  +FVG NG GK+ + +   FL      +      +
Sbjct: 1   MQITSLTIKNYKAFQNITINNMPRFCVFVGANGTGKSTLFDVFGFLR--DSLKNNVRQSL 58

Query: 65  -TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV--DELNKHLR 121
             R G     +     E +       +K+  ++      L+I     + +   E+ ++ R
Sbjct: 59  QVRGGFKEVITREHEDEDICFEVKFRMKILDKERLVTYVLKIGLENNKPIIKREMLRYKR 118

Query: 122 ISWLVPSMDRIFSGL 136
            S   P     F   
Sbjct: 119 GSQGSPFHFLDFKNG 133


>gi|154245924|ref|YP_001416882.1| chromosome segregation protein SMC [Xanthobacter autotrophicus Py2]
 gi|154160009|gb|ABS67225.1| chromosome segregation protein SMC [Xanthobacter autotrophicus Py2]
          Length = 1150

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K   L +  F+ +     L+ +   T  VG NG GK+N++EA+ ++   S  +  R   
Sbjct: 1   MKFDRLRLVGFKTFVEPTDLLIEPGLTGVVGPNGCGKSNLVEALRWVMGESSYKAMRAND 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDRS-VRCLQINDV 108
             DV   G     + +       ++  +  A         +++  R +R      +IN  
Sbjct: 61  MEDVIFSGTTGRPARNSAEVVLSLDNSDRTAPAAFNEWDQLEIVRRIERGAGSSYRINGK 120

Query: 109 VIRVVD 114
            +R  D
Sbjct: 121 DVRARD 126



 Score = 39.5 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 42/215 (19%), Positives = 69/215 (32%), Gaps = 16/215 (7%)

Query: 128  SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
             +  I  G     R        A  P         ER  R R RL              E
Sbjct: 899  EISDILEGPPELAREQAGIDPDAPPPNVAAIEATLERAKRDRERLGAVNLRADVELEETE 958

Query: 188  AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL-DGKFDQSFCALKEE 246
            +Q      K+   R +++ A+  L    +        +L  +  + DG F + F  L   
Sbjct: 959  SQHI----KLVGERDDLLEAIKRLRGAILSLNREARERLQASFVVVDGHFKKLFDTLFGG 1014

Query: 247  YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306
               +L      D +            +      K  T++  S GEQ +  + +  A    
Sbjct: 1015 GEAQLVLTEADDPLE------AGLDIIAKPPGKKPQTLSLLSGGEQALTAMALIFAVF-- 1066

Query: 307  ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
                T  API +LDE+ A LD+        ++ ++
Sbjct: 1067 ---LTNPAPICVLDEVDAPLDDANVERFCTLLEEM 1098


>gi|126659974|ref|ZP_01731097.1| hypothetical protein CY0110_01540 [Cyanothece sp. CCY0110]
 gi|126618739|gb|EAZ89485.1| hypothetical protein CY0110_01540 [Cyanothece sp. CCY0110]
          Length = 233

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 50/118 (42%), Gaps = 15/118 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  +R + +  +   ++  + VG N +GKT++LE I+ L             +  
Sbjct: 2   LKTLTIENYRCFKNFSIKNLSRINLIVGQNNIGKTSLLEFINSLDTNNSI-------LIS 54

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           +           ++ +E   D+ I+L  ++D++++ LQI +  I  +           
Sbjct: 55  VNDDY-------LDNIEKNWDL-IQLTPKEDKAIKALQIINSDIERIGFTVSQYPKQI 104


>gi|121596364|ref|YP_988260.1| hypothetical protein Ajs_4080 [Acidovorax sp. JS42]
 gi|120608444|gb|ABM44184.1| conserved hypothetical protein [Acidovorax sp. JS42]
          Length = 397

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I  L +  +RN+  + +    +    +G N  GK+N+L+   FL
Sbjct: 14 ISRLQLQNWRNFKKIEVDLRDRV-FVIGPNASGKSNLLDVFRFL 56


>gi|89067327|ref|ZP_01154840.1| Chromosome segregation protein [Oceanicola granulosus HTCC2516]
 gi|89046896|gb|EAR52950.1| Chromosome segregation protein [Oceanicola granulosus HTCC2516]
          Length = 1151

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 31/232 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFTRLRLNGFKSFVDPTDLVISQGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             DV   G+      +       ++  E  A        + + + R  +      +V  +
Sbjct: 61  MEDVIFAGAATRPARNHAEVSLVIDNAERTAPAGFNDADQLEITRRITRDVGSAYKVGSK 120

Query: 116 LNKHLRISWL---------VPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             +   +  L          P++ R      + +     RRR L+               
Sbjct: 121 DVRARDVQMLFADAATGAHSPALVRQGQISELINAKPKARRRILEDAAGIA----GLYQR 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSS 210
             E  +R ++        D      +  Q+ +L    +      E+  AL  
Sbjct: 177 RHEAELRLKSAESNLERVDDV-LDQLAQQLGQLARQARQAARYREIGEALRK 227


>gi|307353185|ref|YP_003894236.1| SMC domain-containing protein [Methanoplanus petrolearius DSM
           11571]
 gi|307156418|gb|ADN35798.1| SMC domain protein [Methanoplanus petrolearius DSM 11571]
          Length = 931

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ +    F+ Y+   + F+   T  +G+NG GK+ I++ I F   G   R     D 
Sbjct: 1   MILERIEFKNFKRYSDETINFNDGITGIIGNNGSGKSTIVQGILFALYGV--RAGIEGDF 58

Query: 65  TR-IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQIND 107
               GS S       ++  +   + +I    R   S       ++IN 
Sbjct: 59  INSSGSNSKDKCSVSLDFQKDGNNYTITRWYRKTPSTTQHEAQIKING 106



 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT--GFAPILLLDEISAHLDED 329
           D++V+   +       S GEQ  + + + +A +R +++         ++ DEI    DE+
Sbjct: 819 DILVNDLGENFPARRFSGGEQDDIAIALRIALSRYLADMHHMNGGTFMIFDEIFGSQDEE 878

Query: 330 KRNALFRIVTDIGS---QIFM 347
           +RN L   +    S   QIF+
Sbjct: 879 RRNNLISALRTQESHFPQIFL 899


>gi|296121423|ref|YP_003629201.1| chromosome segregation protein SMC [Planctomyces limnophilus DSM
           3776]
 gi|296013763|gb|ADG67002.1| chromosome segregation protein SMC [Planctomyces limnophilus DSM
           3776]
          Length = 1255

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62
           +K L +  F+++A   R  F +  T  VG NG GK+N+++A+   L     +  R     
Sbjct: 2   LKALELFGFKSFADRTRFDFASGITSVVGPNGSGKSNVVDALKWILGDQSAKSLRGKEMT 61

Query: 63  DVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
           DV   GS     + +A        +   + +ET +    R +  N  
Sbjct: 62  DVIFNGSAGRKPNAYAEATLTFDNSSGLLPIETPEVTVGRRIWRNGE 108


>gi|229505538|ref|ZP_04395048.1| DNA repair protein RecN [Vibrio cholerae BX 330286]
 gi|229510791|ref|ZP_04400270.1| DNA repair protein RecN [Vibrio cholerae B33]
 gi|229517912|ref|ZP_04407356.1| DNA repair protein RecN [Vibrio cholerae RC9]
 gi|229608558|ref|YP_002879206.1| recombination and repair protein [Vibrio cholerae MJ-1236]
 gi|229344627|gb|EEO09601.1| DNA repair protein RecN [Vibrio cholerae RC9]
 gi|229350756|gb|EEO15697.1| DNA repair protein RecN [Vibrio cholerae B33]
 gi|229357761|gb|EEO22678.1| DNA repair protein RecN [Vibrio cholerae BX 330286]
 gi|229371213|gb|ACQ61636.1| DNA repair protein RecN [Vibrio cholerae MJ-1236]
          Length = 562

 Score = 48.7 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 10  LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 64

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 65  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 124

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +        +
Sbjct: 125 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHADLLKATRHAY-QNWRQASNQL 181

Query: 167 RG 168
           + 
Sbjct: 182 KQ 183


>gi|321465214|gb|EFX76217.1| hypothetical protein DAPPUDRAFT_322547 [Daphnia pulex]
          Length = 1334

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I  L+I+  RN++S     + F+   T+ +G NG GKT I+E++ + + G
Sbjct: 3  RIDQLSITGIRNFSSDSAEVIKFEPPVTLILGKNGSGKTTIIESLKYATTG 53


>gi|229523343|ref|ZP_04412750.1| DNA repair protein RecN [Vibrio cholerae TM 11079-80]
 gi|229339706|gb|EEO04721.1| DNA repair protein RecN [Vibrio cholerae TM 11079-80]
          Length = 554

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +        +
Sbjct: 117 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHADLLKATRHAY-QNWRQASNQL 173

Query: 167 RG 168
           + 
Sbjct: 174 KQ 175


>gi|167462694|ref|ZP_02327783.1| ATPase involved in DNA repair [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 510

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 89/266 (33%), Gaps = 41/266 (15%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV- 64
           K K L +  F+++  L + F    T   G+N  GK++ILEAI +L        +      
Sbjct: 4   KFKTLFLHNFKSHRDLEINFGE-LTKITGENTKGKSSILEAIPWLFYSVDMLGSKSDPTP 62

Query: 65  TRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                          V+G +      I L    ++      IN+V  +   E  + ++  
Sbjct: 63  INYEYDHTLVKLHFAVDGKD------ILLGRGIEKGKATYYINEVPAK-AKEYEELVKSL 115

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSS 181
           +       +F              +   +P +   +    +    R  LL       +  
Sbjct: 116 F----DKDLF--------------LSLYNPSYYFTL----KWNEQRELLLRYVSAPANKE 153

Query: 182 WCSSIEAQMAE-LGVKINIARVEMINAL-----SSLIMEYVQKENFPHIKLSLTGFLDGK 235
             + +  Q AE LG  +    +  +  +     +     Y+  ++     +     L   
Sbjct: 154 VFAQLPKQQAEKLGELVKKHSLADLEKIHRDNKNKKDKAYIAAQSRTKTLIEQLQLLPQS 213

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMS 261
              +   ++++Y + L + + +DSM 
Sbjct: 214 -PPNLKNIQDDYDRFLAEIKVIDSML 238


>gi|150021561|ref|YP_001306915.1| hypothetical protein Tmel_1688 [Thermosipho melanesiensis BI429]
 gi|149794082|gb|ABR31530.1| hypothetical protein Tmel_1688 [Thermosipho melanesiensis BI429]
          Length = 427

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT------IFVGDNGVGKTNILEAISFLSPGR 54
          ++I+ + ++ F+ Y +  + F           + V   GVGK+N+LE+I++   G+
Sbjct: 1  MRIEKVKLNNFKQYKNFEIEFSKNDNQDNDFHVIVAIQGVGKSNLLESINWCLYGK 56


>gi|27227805|emb|CAD59411.1| SMC3 protein [Oryza sativa]
          Length = 1205

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 11/117 (9%)

Query: 5   IKIKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRAS 60
           + IK + I  F++Y    +    F  +  + VG NG GK+N   AI   LS      R+ 
Sbjct: 1   MYIKQVVIEGFKSYRE-EISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSE 59

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                           A VE +   +D  I ++  +      +++   V    DE  
Sbjct: 60  DRGALLHEGAGHSVVSAFVEIVFDNSDNRIPVDKEE------VRLRRTVASKKDEYY 110



 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 68/210 (32%), Gaps = 16/210 (7%)

Query: 144  LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
             +  +      +++ +  +      R +L        +   + + ++ EL   ++  + E
Sbjct: 963  CNEQLQQFSHVNKKALDQYVNFTEQREQLQRR----RAELDAGDQKIRELISVLDQRKDE 1018

Query: 204  MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
             I      +  + ++     ++    G       +      ++        R+ D   R 
Sbjct: 1019 SIERTFKGVARHFREVFSELVQ---GGHGHLVMMRKKDGDADDDDNDEDGPREPDPEGRI 1075

Query: 264  TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
                  +  +      +  ++   S G++ VV + +  A           AP  L DEI 
Sbjct: 1076 EKYIGVKVKVSFTGKGETQSMKQLSGGQKTVVALTLIFA-----IQRCDPAPFYLFDEID 1130

Query: 324  AHLDEDKRNALFRIVTDI----GSQIFMTG 349
            A LD   R A+  I+  +     +Q   T 
Sbjct: 1131 AALDPQYRTAVGSIIRRLADMADTQFIATT 1160


>gi|19703613|ref|NP_603175.1| DNA repair protein recN [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
 gi|19713719|gb|AAL94474.1| DNA repair protein recN [Fusobacterium nucleatum subsp. nucleatum
           ATCC 25586]
          Length = 558

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 82/283 (28%), Gaps = 27/283 (9%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ ++ L I        L + F+    +  G+ G GK+ IL  I+ L   +     +
Sbjct: 1   MGRKLMLRELKIENLAIIDELDIEFEKGFIVLTGETGAGKSIILSGINLLIGEK-----A 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+ R G  +  +        E       KLE           I         +    +
Sbjct: 56  SVDMIRDGEENLVAQGVFDVDEEQKK----KLEAMGIDIDGDEIIIRRSYSRSGKARAFI 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
               +  +  +  +         L  +V     +      +  +L+   + L  +     
Sbjct: 112 NNVRITLTDLKEIAST-------LVDIVGQHSHQMLLNKNNHIKLLD--SFLNKDEKDIK 162

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
              +S+  Q  E+  KI     E    L        Q E    +KL          D   
Sbjct: 163 ENLASLLYQYREIDSKIEDIEREKRETLEKKEFYEYQLEEIEKLKLK---------DGED 213

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
             L+ EY +     +  + +        +  D  +     +I 
Sbjct: 214 ELLEVEYKRVFNAEKIREKVYESLEYLKNDDDSALSLITNSIR 256


>gi|297544578|ref|YP_003676880.1| DNA repair protein RecN [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842353|gb|ADH60869.1| DNA repair protein RecN [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 566

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 68/206 (33%), Gaps = 24/206 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I          L F+    +  G+ G GK+ +++++  L  GRG       ++ R
Sbjct: 2   LLALSIQNVALIDKAELQFEEGFNVLTGETGAGKSIVIDSVLLLLGGRG-----SKEIIR 56

Query: 67  IGSPSFFSTFA--------------RVEGMEGLADISIKLETRDDRSVRCL-QIND--VV 109
            G                          G+E   D ++ +     ++ R   +IN   V 
Sbjct: 57  TGEEKAIVEGVFFVDSNKDKIVEILEEIGLELEEDDTLIINREITKNGRSYCRINGRIVP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSME--RRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           +  + ++   L           +            F D    A+  + +  + ++ R+ +
Sbjct: 117 LSFLSKIGAFLVDILGQHEHQFLLDNTKHLFILDNFGDEEFKALREKFKELLKEYNRIQK 176

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
             +    +    +     ++ Q+ E+
Sbjct: 177 EISSFFKDEKEKNETIELLKYQIEEI 202


>gi|117619202|ref|YP_856912.1| homology with RecF protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117560609|gb|ABK37557.1| homology with RecF protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 545

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 60/377 (15%), Positives = 117/377 (31%), Gaps = 71/377 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FR    L L  D   T+ +G+N  GK+++L A+  L           A+ 
Sbjct: 1   MFLERIEVKGFRGINRLSLGLD-NTTVLIGENAWGKSSLLRALWCLL-------GQDAEP 52

Query: 65  TRIGSPSFF---------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI----- 110
            +  S  F          +   ++          + L +R    +    +          
Sbjct: 53  YQFSSDDFHQPEDPELEPARHLQLVLTFSEHRPQMCLHSRRLARLGAAWVKHKDKFHRIH 112

Query: 111 -RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            R   EL     ++     +D I   L ++    L  ++  ++P          RL   R
Sbjct: 113 YRASAELQSDGTVTTTHDFLDGIGKSLPIDDAHELVCLLITMNPVF--------RLRDAR 164

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
                 G     W    E +++EL  K+                +  Q+   P +K +L 
Sbjct: 165 TA--RNGVETLQWGDLSEHRLSELADKLI---------------DEPQRIGEPELKEAL- 206

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR------RTLIGPHRSDLIVDYCDKAIT 283
                   Q+   L + Y   L   +      R       TL  P     ++   D    
Sbjct: 207 --------QAVRQLMDHYFNALAPIKNKPRSQREIVNRPMTLRNPGNLQALLRNADNRAL 258

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
                  +  +  +   L  AR       G  PI++L++  + L        + ++  + 
Sbjct: 259 -------QLAMAGMAATLLQARGNRELEQGARPIMILEDPESRLHPTMLALAWGLLEQLP 311

Query: 343 SQIFMTGTDKSVFDSLN 359
            Q  +T     +  SL 
Sbjct: 312 GQKLLTTNSGDLLSSLP 328


>gi|84996705|ref|XP_953074.1| chromosome segregation protein (SMC homologue) [Theileria annulata
           strain Ankara]
 gi|65304070|emb|CAI76449.1| chromosome segregation protein (SMC homologue), putative [Theileria
           annulata]
          Length = 1266

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 42/126 (33%), Gaps = 18/126 (14%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + I+++ +  F++Y++  +    D       G NG GK+N+L+++ F+         R  
Sbjct: 1   MYIEYVILDGFKSYSTRTVIGPLDPHFNAVTGLNGSGKSNVLDSLCFVFGITDLSLVRAN 60

Query: 60  SYADVT-RIGSPSFFSTFARV------------EGMEGLADISIKLETRDDRSVRCLQIN 106
              ++  + G          +                 + +I+I  +       +    N
Sbjct: 61  KLDELIYKQGQAGITRATVTIIINNTNPMPSLMHPYRNMKEITITRQIALGGKNKYFINN 120

Query: 107 DVVIRV 112
                 
Sbjct: 121 HPATAK 126


>gi|325168967|ref|YP_004285714.1| hypothetical protein ACMV_P2_00360 [Acidiphilium multivorum AIU301]
 gi|325052780|dbj|BAJ83116.1| hypothetical protein ACMV_P2_00360 [Acidiphilium multivorum AIU301]
          Length = 868

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 76/199 (38%), Gaps = 18/199 (9%)

Query: 169 RNRLLTEGY--FDSSWCSSIEAQ-MAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           R  +L E     D  W  SI+A  +AE+  +  IAR+E            V  ++    +
Sbjct: 517 RAAVLAEKAELVDRQWLGSIKADVLAEIERQKKIARLEAAQR--DTATNRVTTKSTEIAQ 574

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
             +T  L  +F +   + +         G  ++   + ++ G  R  + +     A    
Sbjct: 575 ALVTDALRAQFAREVASFE-------IAGLAVELRQQNSVQGIPRFKVALTRKPTAAVGQ 627

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS-- 343
             S GE + V +  F+A      N +G    ++ D+  + LD   R A+ + +    +  
Sbjct: 628 VLSEGEHRCVALAAFMAELATTENKSG----IVFDDPVSSLDHMHREAVAKRLVAEAAHR 683

Query: 344 QIFMTGTDKSVFDSLNETA 362
           Q+ +   D +    LN  A
Sbjct: 684 QVIVFTHDLAFLFELNRAA 702


>gi|309359903|emb|CAP32031.2| CBR-SMC-3 protein [Caenorhabditis briggsae AF16]
          Length = 1241

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF 49
          +KIK + I+ FR+Y     V  F  +  + VG NG GK+N   AI F
Sbjct: 1  MKIKEVRINGFRSYKDNTHVSGFSPRSNVVVGRNGSGKSNFFHAIQF 47


>gi|300865944|ref|ZP_07110681.1| ATPase-like [Oscillatoria sp. PCC 6506]
 gi|300336063|emb|CBN55839.1| ATPase-like [Oscillatoria sp. PCC 6506]
          Length = 375

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA---- 62
           +K + I  FR   +  L  D+   +F+G NG GK+ + + +  +           A    
Sbjct: 2   LKRIYIDNFRCLVNFELSVDS-INLFLGSNGAGKSTVFDVLRKIQAFVSGDSKVDAIFKS 60

Query: 63  -DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
            D TR  +    S    +EG  G     + +E   DR+     I
Sbjct: 61  VDCTRWQTSLIQSFELEIEGNGGTYKYELAIEHDRDRNGNQTHI 104


>gi|282849318|ref|ZP_06258703.1| hypothetical protein HMPREF1035_0268 [Veillonella parvula ATCC
           17745]
 gi|282581022|gb|EFB86420.1| hypothetical protein HMPREF1035_0268 [Veillonella parvula ATCC
           17745]
          Length = 961

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 92/219 (42%), Gaps = 30/219 (13%)

Query: 162 FERLMRGRN--RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE 219
           + R +R  N    L E        +SIE ++A L       R +++ A+ +L  +  Q++
Sbjct: 735 YRR-LREGNKDNWLDELAHSEREIASIEDKLATL----YERRGQIVEAMRTLGSDQEQRQ 789

Query: 220 NFPHIKLSLTGFLDGKFD----------------QSFCALKEEYAKKLFDG---RKMDSM 260
                + +L   L+   +                QS+   K+ +  +L      R     
Sbjct: 790 ML-QEREALQSELESALEDWATQVLISHCMDKAQQSYEQEKQPHMLELASSYVERLTGER 848

Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
               ++G ++   +++   + + +   S+G    V + + LA A++ S     +  ++LD
Sbjct: 849 YILDILGINKGVALINNNGERLELKFWSSGLADQVYLALRLALAKVFSYQV-ESLPIILD 907

Query: 321 EISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
           +I    DE+++ +   ++ ++G   QI++    +SV+D 
Sbjct: 908 DILVRFDENRQRSALELLAELGKNQQIWLFTCQRSVYDM 946



 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR----A 59
          + IK +   EF  Y        D    +  G N  GKT++LE +  L  G   +      
Sbjct: 2  MNIKRIRFDEFGPYRDWSFTTGDNGVQLMYGPNESGKTSLLEGMRTLLFGGTHKAYGPMT 61

Query: 60 SYADVTRIGSPSFFSTFAR 78
             DV R G   +     +
Sbjct: 62 GALDVDRNGESYYIGRKGK 80


>gi|229523607|ref|ZP_04413012.1| pathogenesis-related protein [Vibrio cholerae bv. albensis VL426]
 gi|229337188|gb|EEO02205.1| pathogenesis-related protein [Vibrio cholerae bv. albensis VL426]
          Length = 226

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA-ISFLS 51
          +KI F++I  FR     R+ F  + T+ VG N  GKT+  +A I FL 
Sbjct: 1  MKISFVDIQNFRKLKCCRVEFAEEQTLLVGANNSGKTSATDALICFLG 48


>gi|160947484|ref|ZP_02094651.1| hypothetical protein PEPMIC_01418 [Parvimonas micra ATCC 33270]
 gi|158446618|gb|EDP23613.1| hypothetical protein PEPMIC_01418 [Parvimonas micra ATCC 33270]
          Length = 511

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI  + I+ FR Y   + + FD   T+ VG N VGK+ ILEA+
Sbjct: 1  MKITSMKINNFRGYNKEINIKFDD-LTVIVGKNDVGKSTILEAL 43


>gi|152973641|ref|YP_001338681.1| hypothetical protein KPN_pKPN4p07072 [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|294496717|ref|YP_003560410.1| hypothetical protein pKpQIL_p033 [Klebsiella pneumoniae]
 gi|150958423|gb|ABR80451.1| hypothetical protein KPN_pKPN4p07072 [Klebsiella pneumoniae
          subsp. pneumoniae MGH 78578]
 gi|293339426|gb|ADE43980.1| hypothetical protein [Klebsiella pneumoniae]
          Length = 236

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          I  L +  F+ +  L L F     I VGDN  GK+ IL A+  +      R 
Sbjct: 4  ITRLMLQNFKKFPELDLRFTHDRNILVGDNESGKSTILLALDLVLSDSRHRV 55


>gi|146301397|ref|YP_001195988.1| ATP-dependent OLD family endonuclease [Flavobacterium johnsoniae
          UW101]
 gi|146155815|gb|ABQ06669.1| ATP-dependent endonuclease of the OLD family-like protein
          [Flavobacterium johnsoniae UW101]
          Length = 793

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +K + +  FR     ++  +   +IFVG N  GKT+   A   L
Sbjct: 1  MHLKSITVKNFRRLKKTQIDLEKDDSIFVGANNSGKTS---ATYLL 43


>gi|57015410|sp|Q8NDV3|SMC1B_HUMAN RecName: Full=Structural maintenance of chromosomes protein 1B;
           Short=SMC protein 1B; Short=SMC-1-beta; Short=SMC-1B
 gi|168985288|emb|CAQ08671.1| structural maintenance of chromosomes 1B [Homo sapiens]
          Length = 1235

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 62/155 (40%), Gaps = 16/155 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
            ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3   HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQ 62

Query: 63  DVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKH 119
           ++   G+      S+ A V+ +        K   R  R      + ND ++     + + 
Sbjct: 63  ELI-HGAHIGKPISSSASVKIIYVEESGEEKTFARIIRGGCSEFRFNDNLVSRSVYIAEL 121

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
            +I  +V + + +               ER +F +
Sbjct: 122 EKIGIIVKAQNCLVFQGTVESISVKKPKERTQFFE 156


>gi|148546830|ref|YP_001266932.1| chromosome segregation protein SMC [Pseudomonas putida F1]
 gi|148510888|gb|ABQ77748.1| condensin subunit Smc [Pseudomonas putida F1]
          Length = 1162

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 112/330 (33%), Gaps = 56/330 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIRLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS              F ++   + G     A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSSGRKPVSQASIELVFDNSETTLVGEYAAYAEISIRRKVTRDGQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               E R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEELRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +     + +  + +  ++     +  + R+      +    EY  +
Sbjct: 170 ISKYKERRRETENRIRRTQENLARLTDLREEL-----ERQLERLHRQAQAAEKYREYKAQ 224

Query: 219 ENFPHIKLSLTGF--LDGKFDQSFCALKEE---YAKKLFDGRKMDSMSRRTLIGPH---- 269
           E     +LS   +  LD +  Q    + ++   +   + + R  D+   R   G H    
Sbjct: 225 ERQMKARLSALRWRDLDEQVRQRESVIGDQGVSHEALVAEQRNADASIERLRDGHHELSE 284

Query: 270 ---RSDLIVDYCDKAITIAHGS--TGEQKV 294
              +           I     S   G+Q++
Sbjct: 285 RFNQVQGRFYSVAGDIARVEQSIQHGQQRL 314


>gi|297184263|gb|ADI20381.1| chromosome segregation ATPases [uncultured alpha proteobacterium
           EB080_L27A02]
          Length = 1151

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 31/278 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+ ++      +  R   
Sbjct: 1   MQFSKLRLTGFKSFVDPTELIIADGLTGVVGPNGCGKSNLLEALRWVMGENRPKAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             DV   G+ S     +      ++  + LA  +   +   +   R  +      +   +
Sbjct: 61  MEDVIFAGASSRPARNYAEVSLLIDNTQRLAPAAFNTQDVLEIIRRITRDVGSAYKTNGK 120

Query: 116 LNKHLRISWL---------VPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            ++   +  L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DSRAKDVQMLFADASTGAHSPALVRQGQISELINAKPKARRRVLE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSSLIMEYVQK 218
             E  ++ R         D      ++AQ+  L    +      E+ N L       + +
Sbjct: 177 RHEAELKLRGSETNLNRVDDV-VEQLDAQLGSLARQARQAKRYREIGNELRHSEGLLLYR 235

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
                         +      F A  +  A +L   R+
Sbjct: 236 RWREADIARQKASEELADATKFAANAQTEASQLLKARE 273



 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  T++  S GEQ +  + +  A           API +LDE+ A LD+   N    +
Sbjct: 1043 GKKLSTLSLLSGGEQTLTALALIFAVFLA-----NPAPICVLDEVDAPLDDANVNRFCDM 1097

Query: 338  VTDIGSQI 345
            + D+ SQ 
Sbjct: 1098 LDDMTSQT 1105


>gi|293380436|ref|ZP_06626505.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
 gi|290923015|gb|EFD99948.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
          Length = 831

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 245 EEYAKKLFDGRK-MDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           E + K L   ++ +  ++    +G +      +V    K   + + S G  + +   + L
Sbjct: 701 ERFPKMLKAAQEYLALLTGGRYVGINLDKKLTVVRSDGKKREVKYLSRGTAEQLYFALKL 760

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
           A    I +       +L+D+   + D+ + + + +++  I   +Q+ +    K++ D L 
Sbjct: 761 AFIEQIKDEINLP--ILIDDSFVNFDDQRVSYIDQLLQKISENNQVLIFTAQKNLVDQLG 818



 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +++K + I  F  +++        Q  +F G N  GK+  +  I  +  G   R  S   
Sbjct: 1   MRLKQIKIINFGQFSNKTFDLPSDQINVFFGANEAGKSTTVAFIKQILFGFHLRSNSSPF 60

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  +        F   +G   L  +  K   +  + +  ++ +  V+      +
Sbjct: 61  FEDYTPLAHVSPMGGNLVFTAADGEYELERLYAK-GDKTKKGILTVKKDGQVVPESVFFD 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           +   I     +   IF+   + +   L +    ++  +     D  +L+  R+    E 
Sbjct: 120 QIQNIDGSFYADSFIFNQEMLGQVNSLSQEDL-LERIYYLGAADSSKLLEMRDDFAKEA 177


>gi|261251175|ref|ZP_05943749.1| ATP-dependent endonuclease [Vibrio orientalis CIP 102891]
 gi|260938048|gb|EEX94036.1| ATP-dependent endonuclease [Vibrio orientalis CIP 102891]
          Length = 543

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +K++ + IS FR    L + FD   T  +G+N  GK+++L+A+S 
Sbjct: 1  MKLERIEISGFRGIKRLSIAFDE-LTTLIGENTWGKSSLLDALSV 44


>gi|229530040|ref|ZP_04419430.1| DNA repair protein RecN [Vibrio cholerae 12129(1)]
 gi|229333814|gb|EEN99300.1| DNA repair protein RecN [Vibrio cholerae 12129(1)]
          Length = 562

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 10  LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 64

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 65  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 124

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +        +
Sbjct: 125 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHADLLKATRHAY-QNWRQASNQL 181

Query: 167 RG 168
           + 
Sbjct: 182 KQ 183


>gi|241958420|ref|XP_002421929.1| chromosomal ATPase, putative; structural maintenance of chromosomes
           protein, putative; subunit of the multiprotein cohesin
           complex, putative [Candida dubliniensis CD36]
 gi|223645274|emb|CAX39930.1| chromosomal ATPase, putative [Candida dubliniensis CD36]
          Length = 1240

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 6   KIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
           ++  L +  F++Y    ++    +  T  +G NG GK+N+++AISF+        R  + 
Sbjct: 3   RLIGLELFNFKSYKGKSIIGFGSSYFTSIIGPNGAGKSNMMDAISFVLGVNSYHLRSQNL 62

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            D+   G  +  +    ++ +E     +  + T +  +   L++   
Sbjct: 63  KDLIYRGRRNVDTDNTTLDAIEQDPTSAYVMATYEKDNGEILKLKRT 109


>gi|195435017|ref|XP_002065498.1| GK15482 [Drosophila willistoni]
 gi|194161583|gb|EDW76484.1| GK15482 [Drosophila willistoni]
          Length = 1029

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 46/145 (31%), Gaps = 14/145 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +IK +   +F +Y  +         +  G NG GK+ I+ AI  L  G       R +S 
Sbjct: 11  RIKTVYCKDFVSYNEIAYCPKKYLNVLTGPNGTGKSTIVSAI-ILGFGGEPQLLNRSSSI 69

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL----- 116
           +D  +       +    + G  G  +I     T +        IND  +     L     
Sbjct: 70  SDYIQSNKTQA-TIIIEIYGR-GENEIDTFRRTINQTGPSKYAINDKDVSKKAFLAFVST 127

Query: 117 --NKHLRISWLVPSMDRIFSGLSME 139
              +   +   +P           E
Sbjct: 128 YNIQVSNLCQFLPQDRDFSKMNPQE 152


>gi|77405269|ref|ZP_00782365.1| DNA repair protein RecN [Streptococcus agalactiae H36B]
 gi|77176064|gb|EAO78837.1| DNA repair protein RecN [Streptococcus agalactiae H36B]
          Length = 552

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 96/278 (34%), Gaps = 37/278 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIEEISLNFETGMTVLTGETGAGKSIIIDAMNMMLGSR-----ASVEVIR 56

Query: 67  IGSP-SFFSTFARVE------------GMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
            G+  +    F  VE            G+E   ++ I+ E          +IN  ++   
Sbjct: 57  HGANKAAIEGFFSVEKNQSLVQLLEENGIELADELIIRREIFQ-NGRSVSRINGQMVNLS 115

Query: 112 --------VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                   +VD   +H +   + P+M  +          F +     I  R++     + 
Sbjct: 116 TLKAVGHYLVDIHGQHDQEELMKPNMHILMLD------EFGNTEFNVIKERYQSLFDAYR 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE--MINALSSLIMEYVQKENF 221
           +L +           + S    +E Q+AE+      +  +  ++     L+      +  
Sbjct: 170 QLRKRVLDKQKNEQENKSRIEMLEFQIAEIESVALKSDEDQTLLKQRDKLMNHKNIADTL 229

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            +  L L             A+ +  A + FD    D 
Sbjct: 230 TNAYLMLDNEEFSSLSNVRSAMNDLMALEEFDREYKDL 267


>gi|329961136|ref|ZP_08299391.1| DNA repair protein RecN [Bacteroides fluxus YIT 12057]
 gi|328532074|gb|EGF58884.1| DNA repair protein RecN [Bacteroides fluxus YIT 12057]
          Length = 553

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 16/199 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + FD+  ++  G+ G GK+ IL AI  L    +  +  R  +  
Sbjct: 2   LRSLYIQNYALIEKLDINFDSGFSVITGETGAGKSIILGAIGLLLGQRADVKSIRTGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            V   R   S      F     +E   +  ++ E       R   IND       + EL 
Sbjct: 62  CVIEARFDISAYGMQPFFEENELEYEEECILRREVYASGKSRAF-INDTPASLAQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID---PRHRRRMIDFERLMRGRNRLLT 174
           + L           +       +   LD ++   +     ++    ++++ +    +++ 
Sbjct: 121 ELLIDV--HSQHQNLLLNKEGFQLNVLD-ILSHNEEVLAAYQSVHKEWKQALYDLEKIIA 177

Query: 175 EGYFDSSWCSSIEAQMAEL 193
               D +    I  Q+ +L
Sbjct: 178 RAEQDKADEDYIRFQLEQL 196


>gi|317967964|ref|ZP_07969354.1| SMC ATPase superfamily chromosome segregation protein
          [Synechococcus sp. CB0205]
          Length = 1201

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          + I  + ++ F+++  S+ +  D   T+  G NG GK+NIL+ + F       R      
Sbjct: 2  VHINQVELTHFKSFGGSMSIPLDEGFTVVTGPNGSGKSNILDGVLFCLGLASSRGMRAER 61

Query: 64 V 64
          +
Sbjct: 62 L 62


>gi|308483796|ref|XP_003104099.1| CRE-SMC-3 protein [Caenorhabditis remanei]
 gi|308258407|gb|EFP02360.1| CRE-SMC-3 protein [Caenorhabditis remanei]
          Length = 1232

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF 49
          +KIK + I+ FR+Y     V  F  +  + VG NG GK+N   AI F
Sbjct: 1  MKIKEVRINGFRSYKDNTHVSGFSPRSNVVVGRNGSGKSNFFHAIQF 47



 Score = 43.0 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V + I  A           AP  L DEI A LD   R ++  ++  +  Q  F
Sbjct: 1131 SGGQKSLVALAIIFA-----IQKCDPAPFYLFDEIDAALDAQHRKSVAEMIQSLSDQAQF 1185

Query: 347  MTGT 350
            +T T
Sbjct: 1186 VTTT 1189


>gi|222081488|ref|YP_002540851.1| hypothetical protein Arad_7840 [Agrobacterium radiobacter K84]
 gi|221726167|gb|ACM29256.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 598

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++I  ++I  FR      + FD   T+ +GDN  GK+ + EAI  
Sbjct: 1  MRIVRVHIENFRGIKLADIYFD-GTTVLLGDNNTGKSTVFEAIEL 44


>gi|52548503|gb|AAU82352.1| hypothetical protein GZ17A3_14 [uncultured archaeon GZfos17A3]
          Length = 540

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +KI+   I  +R+   L++       +  G N VGK+NIL  +  
Sbjct: 1  MKIEAFTIKNYRSIKELKIENLNPVNVVFGKNNVGKSNILRGLHL 45


>gi|58040431|ref|YP_192395.1| chromosome partition protein Smc [Gluconobacter oxydans 621H]
 gi|58002845|gb|AAW61739.1| Chromosome partition protein Smc [Gluconobacter oxydans 621H]
          Length = 1511

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/163 (22%), Positives = 66/163 (40%), Gaps = 24/163 (14%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
           I  L+I  F+++A  +RL      T  +G NG GK+N++E + +    +  R  R     
Sbjct: 8   IDRLSIGGFKSFADEVRLDILPGLTGIIGPNGCGKSNVVEGLRWAMGETSARALRGGELD 67

Query: 63  DVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDVVI 110
           D+   G     + +       +    GLA         +++  R +R S    +IN  V+
Sbjct: 68  DLIFAGTGARSARNIAQVTLHLSNAAGLAPSPFQDADELEISRRAERGSGSEYRINGRVM 127

Query: 111 RVVD------ELNKHLRISWLVPSMD--RIFSGLSMERRRFLD 145
           R  D      +L    R S ++      ++ +    ERR  L+
Sbjct: 128 RARDVQTLFADLASGARSSAIISQNRVGQLIAAKPEERRLLLE 170


>gi|325299836|ref|YP_004259753.1| ATP-binding protein [Bacteroides salanitronis DSM 18170]
 gi|324319389|gb|ADY37280.1| ATP-binding protein [Bacteroides salanitronis DSM 18170]
          Length = 308

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR---RASYAD 63
            L +  F  +    L F     +F+G NG GKT+IL+ ++             +   D
Sbjct: 3  NKLYLKGFTCFQDCTLEFCGGINVFIGRNGTGKTHILKCMAAAMKANSLFEQSTSKTKD 61


>gi|256371918|ref|YP_003109742.1| SMC domain protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008502|gb|ACU54069.1| SMC domain protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 535

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 18/185 (9%)

Query: 10  LNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT- 65
           L++ E RN     +  L          G+ G GKT I+ AI  L   R     + +D+  
Sbjct: 2   LSLLEVRNLGVVEAASLELPGGLVALTGETGAGKTLIVGAIGLLLGER-----ARSDLVG 56

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                +       V+G E + +  +  E R        +I+  ++ V +  +   R   +
Sbjct: 57  ASDERARVRAIVDVDGHEAVVEREVTREGRSR-----ARIDGELVAVGELASFVARAVQV 111

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           V     +F     ++R  LDR+    D    R        +      L     D      
Sbjct: 112 VGQHQAVFVTQPDQQRAILDRIGGIDDRAWHRARER----LADATAALRRARDDHDHAER 167

Query: 186 IEAQM 190
              ++
Sbjct: 168 ERERL 172


>gi|190341577|gb|ACE74865.1| RecN [Escherichia hermannii]
          Length = 553

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 83/274 (30%), Gaps = 37/274 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHNGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPS-------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFSLKDTPAAQRWLEENQLEEGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +   +       +R  LD       +     +H R+     R +
Sbjct: 116 QLRELGQVLIQIHGQHAHQLLLK--PEHQRTLLDGYAGEYALTQQMAQHYRQWHQSCRDL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMINA---LSSLIMEYVQ 217
               +   E    +        ++ E         +I+     + N+   LS+       
Sbjct: 174 AAHQQQSQERTARAELLQYQLKELNEFAPQPGEYEQIDAEYKRLANSGQLLSTGQQALQL 233

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
             +     +    +   +       + E+ +  L
Sbjct: 234 ITDGEDANIQSQLYAARQLLTELAGMDEKLSSVL 267


>gi|281417662|ref|ZP_06248682.1| SMC domain protein [Clostridium thermocellum JW20]
 gi|281409064|gb|EFB39322.1| SMC domain protein [Clostridium thermocellum JW20]
          Length = 483

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          IK + I  F+++    L F     + VG +  GK+ I+ AI ++            D  R
Sbjct: 4  IKRVRIENFQSHKDTELSFSDGLNVIVGPSDQGKSAIIRAIKWVLYNE----PRGTDFIR 59

Query: 67 IGSPSF 72
           G+ S 
Sbjct: 60 QGTNSA 65


>gi|172056361|ref|YP_001812821.1| AAA ATPase [Exiguobacterium sibiricum 255-15]
 gi|171988882|gb|ACB59804.1| AAA ATPase [Exiguobacterium sibiricum 255-15]
          Length = 437

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE--AISFLSPGRGFRRASYA 62
          + IK + +  F  +    + F  Q T+ VG+NG GKT +L+  A++  S   G     ++
Sbjct: 1  MIIKEITMKNFHGFKERHITFSDQFTVLVGNNGTGKTAVLDGLAVALGSYLSGL-NGVHS 59

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKL 92
             +         +  +    GL+DI ++ 
Sbjct: 60 RHIKRDE-----IYREIYIHGGLSDIQMQF 84


>gi|42740738|gb|AAS44543.1| structural maintenance of chromosome protein 2 [Trypanosoma
          cruzi]
          Length = 1172

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY- 61
          +++K + I  F++YA  +             G NG GK+NI +A+ F+      +R    
Sbjct: 1  MRVKSIVIDGFKSYAHRKALEDLSPHFNAITGLNGSGKSNIFDAVCFVMGITNLKRVRAE 60

Query: 62 --ADVT-RIGSPSFFSTFARVE 80
             ++  R G+    +    +E
Sbjct: 61 DPRELIFRAGTTGVHAARVTIE 82


>gi|71565160|ref|NP_683515.3| structural maintenance of chromosomes protein 1B [Homo sapiens]
          Length = 1235

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 62/155 (40%), Gaps = 16/155 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
            ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3   HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQ 62

Query: 63  DVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKH 119
           ++   G+      S+ A V+ +        K   R  R      + ND ++     + + 
Sbjct: 63  ELI-HGAHIGKPISSSASVKIIYVEESGEEKTFARIIRGGCSEFRFNDNLVSRSVYIAEL 121

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
            +I  +V + + +               ER +F +
Sbjct: 122 EKIGIIVKAQNCLVFQGTVESISVKKPKERTQFFE 156


>gi|330892447|gb|EGH25108.1| ATP binding protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 429

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
            +R +    + FD   TI +  NG GKT IL+A
Sbjct: 2  QNYRCFGEFEIDFDPHLTILIASNGGGKTTILDA 35


>gi|320322902|gb|EFW78993.1| hypothetical protein PsgB076_20607 [Pseudomonas syringae pv.
          glycinea str. B076]
          Length = 333

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEA-ISFLSPGRGFRRASY 61
          ++I+ +++S FR +    + +   A+ T  VG N  GKT +L A +      R  R    
Sbjct: 1  MRIESVSLSGFRCFGPNPITVDVSAEITTIVGPNAAGKTALLHAMLKLFGVTRAQRTILR 60

Query: 62 AD 63
          +D
Sbjct: 61 SD 62


>gi|303236081|ref|ZP_07322684.1| DNA repair protein RecN [Prevotella disiens FB035-09AN]
 gi|302483954|gb|EFL46946.1| DNA repair protein RecN [Prevotella disiens FB035-09AN]
          Length = 553

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 26/197 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  F     L + F    ++  G+ G GK+ IL AIS L   R     + +   +
Sbjct: 2   LKHLYIKNFTLIDELDIDFFNGFSVISGETGAGKSIILGAISLLLGNR-----ADSKQIK 56

Query: 67  IGSPSFFS------------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--V 112
            G                   F +  G++   D +I     +D       IND  +   +
Sbjct: 57  QGEKKCIIEAVFTLAKGVYDDFFKANGIDLDIDETILRREINDSGKSRAFINDTPVSLTL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFE---RLMR 167
           + +L   L    +      +       +   +D +         ++    D++   + + 
Sbjct: 117 MRDLGDQL--VDIHSQHQNLLLQKEDFQLNIVDIIARNEQELQHYKEAYTDYKNTEKRLA 174

Query: 168 GRNRLLTEGYFDSSWCS 184
              + L E   +  +  
Sbjct: 175 QLKKQLEESAENEEFMR 191


>gi|297709149|ref|XP_002831306.1| PREDICTED: structural maintenance of chromosomes protein 1B-like
           isoform 1 [Pongo abelii]
          Length = 1235

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 63/155 (40%), Gaps = 16/155 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
            ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3   HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKTIQ 62

Query: 63  DVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKH 119
           ++   G+      S+FA V+ +        K   R  R      + +D ++     + + 
Sbjct: 63  ELI-HGAHIGKPISSFASVKIVYVEKSGEEKTFARIIRGRCSEFRFDDNLVSRSVYIAEL 121

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
            +I  +V + + +               ER +F +
Sbjct: 122 EKIGIIVKAQNCLVFQGTVESISMKKPKERTQFFE 156


>gi|260103205|ref|ZP_05753442.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260082996|gb|EEW67116.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 833

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 85/219 (38%), Gaps = 27/219 (12%)

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMINALSSLIME 214
           +++     L  +    +    +++AQ+A+L            +  A+ E+ N  ++ +  
Sbjct: 620 KVLAQLQNLAAQATDTTKEIDALQAQVAKLQVQLDNLADSTAVFEAKQELANTETNFVNS 679

Query: 215 YVQKENFPHIKLS--LTGFLDGKFDQSFCAL---KEEYAKKLFDGRKMDSMSRRTLIGPH 269
              +E   ++ +S  ++  LD   ++ F  +    +EY   L  GR +D +  + L    
Sbjct: 680 --SQEYLANLVVSRWISRSLDLASNERFPKMLSAAKEYFALLTGGRYVDIILDKKLTVTR 737

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           +         K   + + S G  + +   + LA    I +       +L+D+   + D+ 
Sbjct: 738 KD-------GKKREVKYLSRGTAEQLYFALKLAFIEQIKDKINLP--ILIDDSFVNFDDR 788

Query: 330 KRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMR 366
           +   + +++  +   +Q+ +    + + D L  +     
Sbjct: 789 RIGYIKKLLEKVSENNQVLIFTAQEKLVDQLEISPLTFT 827



 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 81/250 (32%), Gaps = 31/250 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +++K + I  F  +++        Q  +F G N  GK+  +  I  +  G   R  +   
Sbjct: 1   MRLKQIKIVNFGQFSNKTFDLPSDQINVFFGANEAGKSTTVAFIKQVMFGFHLRSNASPF 60

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  + SP   S     +  E   +       +  R +  ++ +  V+      +
Sbjct: 61  FEDYTPLAHV-SPMGGSLVFENDDSEYELERLYAKGDKTKRGILTVKKDGQVVPENLFFD 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR-------- 169
           +   I     +   IF+   + +   L +    ++  +     +  +L++ R        
Sbjct: 120 QIQNIDGSFYADSFIFNQEMLGQVTSLSQEDL-LERIYYLGAANSGQLLKLRDDFAKEAG 178

Query: 170 ------------NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
                       NRLL +   D    +  +A+ ++   K+     +  + L     + + 
Sbjct: 179 KLFKKTGKKPEVNRLLKQIETDRDQLAQTKAEFSDY-EKLAQDLKDYKDRLRK-AQKALA 236

Query: 218 KENFPHIKLS 227
                   L 
Sbjct: 237 NIQNKQASLR 246


>gi|229587796|ref|YP_002869915.1| hypothetical protein PFLU0231 [Pseudomonas fluorescens SBW25]
 gi|229359662|emb|CAY46510.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 386

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 93/303 (30%), Gaps = 50/303 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L ++ +R+   L +  D +  +  G NG GK+N+  A+  L+            + R
Sbjct: 2   LKTLAVANYRSINKLVVPLD-RLNLVTGPNGSGKSNLYRALRLLAETAQ--GGVINALAR 58

Query: 67  IG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN------------DVVIRV 112
            G    +F++    +     + +  + +E    + V+ L++              +    
Sbjct: 59  EGGLDSTFWAGPETISRR--MRNGEVPVEAVVRQGVKRLRLGFAGEDFSYAISLGLPEPS 116

Query: 113 VDELNKHLRI--------SWLVPSMDRIFSGLSMER-RRFLDR-MVFAIDPRHRRRMIDF 162
               +    +            P+   +     M R R   +  ++    P +       
Sbjct: 117 RSFFSLDPEVKKECIWAGQIYRPASLLVQRSGPMVRARDGRNWDVLAQHTPNYHSLFDQV 176

Query: 163 ER--------LMRGRNRLLT---------EGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
                     L+R   R            +         +    +   G  +  A ++ I
Sbjct: 177 GSLRGSPEVLLLRESIRGWRFYDHFRSDVDAPVRQPQLGTRTPVLHHDGRDLAAA-LQTI 235

Query: 206 NAL-SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
             +     ++    + FP  +L++     G+F   F   +E   + L      D   R  
Sbjct: 236 REIGDPEALQRAVSDAFPGARLNIEPLQGGRFAIEF--YQEGLLRPLSAAELSDGTLRYL 293

Query: 265 LIG 267
           L+ 
Sbjct: 294 LLI 296


>gi|254414789|ref|ZP_05028553.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
          chthonoplastes PCC 7420]
 gi|196178278|gb|EDX73278.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
          chthonoplastes PCC 7420]
          Length = 1006

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 9  FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           L +  F +Y    L F   HT    G NG GK+++LEAI++   G+  R AS  D+   
Sbjct: 5  KLTLKNFLSYRETTLDFRGLHTACICGANGAGKSSLLEAITWAIWGQC-RAASEDDLIHS 63

Query: 68 GSPSFFSTF 76
          G+ +    F
Sbjct: 64 GAKNVRVDF 72


>gi|161507903|ref|YP_001577867.1| hypothetical protein lhv_1664 [Lactobacillus helveticus DPC 4571]
 gi|160348892|gb|ABX27566.1| hypothetical protein lhv_1664 [Lactobacillus helveticus DPC 4571]
          Length = 833

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 85/219 (38%), Gaps = 27/219 (12%)

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMINALSSLIME 214
           +++     L  +    +    +++AQ+A+L            +  A+ E+ N  ++ +  
Sbjct: 620 KVLAQLQNLAAQATDTTKEIDALQAQVAKLQVQLDNLADSTAVFEAKQELANTETNFVNS 679

Query: 215 YVQKENFPHIKLS--LTGFLDGKFDQSFCAL---KEEYAKKLFDGRKMDSMSRRTLIGPH 269
              +E   ++ +S  ++  LD   ++ F  +    +EY   L  GR +D +  + L    
Sbjct: 680 --SQEYLANLVVSRWISRSLDLASNERFPKMLSAAKEYFALLTGGRYVDIILDKKLTVTR 737

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           +         K   + + S G  + +   + LA    I +       +L+D+   + D+ 
Sbjct: 738 KD-------GKKREVKYLSRGTAEQLYFALKLAFIEQIKDKINLP--ILIDDSFVNFDDR 788

Query: 330 KRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMR 366
           +   + +++  +   +Q+ +    + + D L  +     
Sbjct: 789 RIGYIKKLLEKVSENNQVLIFTAQEKLVDQLEISPLTFT 827



 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 81/250 (32%), Gaps = 31/250 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +++K + I  F  +++        Q  +F G N  GK+  +  I  +  G   R  +   
Sbjct: 1   MRLKQIKIVNFGQFSNKTFDLPSDQINVFFGANEAGKSTTVAFIKQVMFGFHLRSNASPF 60

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  + SP   S     +  E   +       +  R +  ++ +  V+      +
Sbjct: 61  FEDYTPLAHV-SPMGGSLVFENDDSEYELERLYAKGDKTKRGILTVKKDGQVVPENLFFD 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR-------- 169
           +   I     +   IF+   + +   L +    ++  +     +  +L++ R        
Sbjct: 120 QIQNIDGSFYADSFIFNQEMLGQVTSLSQEDL-LERIYYLGAANSGQLLKLRDDFAKEAG 178

Query: 170 ------------NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
                       NRLL +   D    +  +A+ ++   K+     +  + L     + + 
Sbjct: 179 KLFKKTGKKPEVNRLLKQIETDRDQLAQTKAEFSDY-EKLAQDLKDYKDRLRK-AQKALA 236

Query: 218 KENFPHIKLS 227
                   L 
Sbjct: 237 NIQNKQASLH 246


>gi|50365048|ref|YP_053473.1| structural maintenance of chromosomes smc superfamily protein
           [Mesoplasma florum L1]
 gi|50363604|gb|AAT75589.1| structural maintenance of chromosomes smc superfamily protein
           [Mesoplasma florum L1]
          Length = 995

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 67/190 (35%), Gaps = 38/190 (20%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K +    F+++A    L F  +    VG NG GK+NI ++I +       +  R A+  
Sbjct: 4   LKQIRAVGFKSFAEPTTLNFTKEMIGVVGPNGSGKSNITDSIRWALGEQSTKSLRGANMD 63

Query: 63  DVTRIGS-PSFFSTFARVEGM-EGLADI-------SIKLETRDDRSVR--CLQINDVVIR 111
           D+   GS     + FA V  + +   DI        +++  R ++  R     IN    +
Sbjct: 64  DIVFSGSTDKPAADFAEVTLVFDNQRDIFSTIKTDVVEITRRFNKKTRDSDFFINGEKCK 123

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
            + ++      + L  S   I S              RR   D             +  +
Sbjct: 124 -LRDIQDVALETGLTKSSIAIISQGTISTFAEAKPDARREIFDE---------AAGLAKY 173

Query: 163 ER----LMRG 168
           ++     ++ 
Sbjct: 174 KKRKLEALKQ 183


>gi|15839002|ref|NP_299690.1| hypothetical protein XF2411 [Xylella fastidiosa 9a5c]
 gi|9107597|gb|AAF85210.1|AE004050_3 hypothetical protein XF_2411 [Xylella fastidiosa 9a5c]
          Length = 777

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 71/200 (35%), Gaps = 17/200 (8%)

Query: 161 DFERLMRGRNRLLT--EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
            +   +   NR +T        +  ++++A +A L + I     E++ A++       +K
Sbjct: 400 AYNAAVVEINRRITNFRKTLAENTPAALDASIATLEIGIVRQSTEVVQAITVYQAAKAKK 459

Query: 219 ENFPHIKLSLTGFLDGKFDQ---SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
           E     K ++   LD         + +   ++ +       +  + +    G  R+  ++
Sbjct: 460 EQLEREKKNMRAALDAGLPDLLSEYASKINQFLRDFGAAFSIKKLQQSMQGGTMRASYVL 519

Query: 276 DYCDKAITIAH-----------GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
               K + +              S G+++ + +  FLA      +      ++L D+   
Sbjct: 520 QLRGKEVALGRRTDSDPGFHNVLSEGDKRTLALAFFLARLYATPDALVGKSVVL-DDPMC 578

Query: 325 HLDEDKRNALFRIVTDIGSQ 344
             D  +RN     +  + +Q
Sbjct: 579 SFDMTRRNRTMESIAALVNQ 598


>gi|58580161|ref|YP_199177.1| ATPase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84622162|ref|YP_449534.1| hypothetical protein XOO_0505 [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|58424755|gb|AAW73792.1| predicted ATPase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84366102|dbj|BAE67260.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
          MAFF 311018]
          Length = 411

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 7/82 (8%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRA---- 59
          +I++L I  FR    L L      T+ +G NG GK+ + +  +FL+     G RRA    
Sbjct: 12 RIEYLKIQNFRAIRDLELRDITPLTVLLGPNGSGKSTVFDVFAFLAECFELGLRRAWDKR 71

Query: 60 -SYADVTRIGSPSFFSTFARVE 80
              ++   GS    +   +  
Sbjct: 72 GRARELKTRGSEGPITIEIKYR 93


>gi|297581241|ref|ZP_06943165.1| DNA repair protein RecN [Vibrio cholerae RC385]
 gi|297534557|gb|EFH73394.1| DNA repair protein RecN [Vibrio cholerae RC385]
          Length = 554

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +        +
Sbjct: 117 LKTLGQLLINVHGQHAHQQLMK--PEHQLSMLDQYAGHADLLKATRHAY-QNWRQASNQL 173

Query: 167 RG 168
           + 
Sbjct: 174 KQ 175


>gi|332532504|ref|ZP_08408382.1| chromosome partition protein Smc [Pseudoalteromonas haloplanktis
          ANT/505]
 gi|332038147|gb|EGI74594.1| chromosome partition protein Smc [Pseudoalteromonas haloplanktis
          ANT/505]
          Length = 1133

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + ++ F+++    ++ F  Q T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1  MRLSTIKLAGFKSFVEPTKIPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MTDVIFNGS 69


>gi|291279978|ref|YP_003496813.1| DNA repair protein RecN [Deferribacter desulfuricans SSM1]
 gi|290754680|dbj|BAI81057.1| DNA repair protein RecN [Deferribacter desulfuricans SSM1]
          Length = 547

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 82/243 (33%), Gaps = 29/243 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I++L I  F  +    + F+    I  G+ G GK+ +++AI  +  G  F +    D+ +
Sbjct: 2   IRYLKIKNFSVFDETSIEFENGLNIITGETGAGKSVLIDAIKMV-LGDRFSKEKQRDLAK 60

Query: 67  IGSPSF----FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND----------VVIRV 112
                           +     + D  I     D      + IN           +   +
Sbjct: 61  KTVLEAVFEDIKLSDELNDKYEIEDTLIIRREIDSGGKNKVFINGFSATLNELRNLASNL 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP----RHRRRMIDFERLMRG 168
           VD   +H     L P   + F        +F+D            +++      + L+  
Sbjct: 121 VDIHGQHDHQLLLNPENHKFFID------KFIDNEFLQKFRQNYEKYKSLKTKLKHLIEN 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEM---INALSSLIMEYVQKENFPHI 224
           R+ +  +  +  +  + I+    ++   +    R++    I  + + I   +Q  ++  I
Sbjct: 175 RSEIELKREYLLNQINEIDELNIDIENDLKLEERIKFLSNIEKIRNAINSSLQLLSYSEI 234

Query: 225 KLS 227
            + 
Sbjct: 235 NVE 237


>gi|251777825|ref|ZP_04820745.1| gp49 [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082140|gb|EES48030.1| gp49 [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 655

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 6/110 (5%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           K+K L +  F+    L + F    T  +G+NG GK+ I +  ++L  G+        ++ 
Sbjct: 3   KLKKLELKNFKGIKELTVTFG-TVTTILGENGTGKSTIFDGFNWLLFGKDSHDKKDFEIQ 61

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            +   +       + G+E      ++++  +    R  +      R   E
Sbjct: 62  TLDGNNDV-----IHGLEHYVTGYLEVDGTEKTFKRTYKEKWQKTRGSAE 106


>gi|77360024|ref|YP_339599.1| SMC protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76874935|emb|CAI86156.1| putative SMC family protein [Pseudoalteromonas haloplanktis
          TAC125]
          Length = 1137

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + ++ F+++    ++ F  Q T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1  MRLSTIKLAGFKSFVEPTKIPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61 YADVTRIGS 69
           ADV   GS
Sbjct: 61 MADVIFNGS 69


>gi|117920015|ref|YP_869207.1| chromosome segregation protein SMC [Shewanella sp. ANA-3]
 gi|117612347|gb|ABK47801.1| chromosome segregation protein SMC [Shewanella sp. ANA-3]
          Length = 1142

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/374 (12%), Positives = 111/374 (29%), Gaps = 77/374 (20%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++ F    +  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPFLQALSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQIND 107
            +DV   GS +            F +   R+ G     +  I ++ +  R       +N 
Sbjct: 61  MSDVIFNGSSARKPVSVAGVELVFENKEGRLAGQYASYE-EISVKRQVSRDGESWYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               + R F++             
Sbjct: 120 QKCRRKD-ITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAG--------- 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +     +      I +++A           + +  LS       Q 
Sbjct: 170 ISRYKERRRETENRIRHTRENLERLGDIRSELA-----------KQLEKLSQQAKAAKQY 218

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                 +      L     Q   +     ++++       + ++                
Sbjct: 219 RELKQAERKTHAELLVMRYQELQSQMASLSEQISSLELQQAAAQSLAQ------------ 266

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE------DKRN 332
                     TGE +   + + L+               L     A L++       +  
Sbjct: 267 ----------TGELESTELQLKLSQLAE-QEQQAVEAYYLTGTEIAKLEQQLQSQKQRDA 315

Query: 333 ALFRIVTDIGSQIF 346
            L   +  +  QI 
Sbjct: 316 QLHNQLEQLSEQII 329



 Score = 39.1 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 66/216 (30%), Gaps = 43/216 (19%)

Query: 156  RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
               + + + ++      L        W   ++             R ++I  L ++ +  
Sbjct: 899  LAALSEQQIVLAQIVDSLPADGHPDKWQRDLDQ-----------IRQKII-RLGAINLAA 946

Query: 216  VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM----------DSMS---- 261
            +++      + S     D   +     L+E   K   + R            D       
Sbjct: 947  IEEFEQQSERKSYLDHQDEDLNNGLATLEEAIRKIDKETRTRFKTTFDAVNEDLGRLFPK 1006

Query: 262  ----RRTLIGPHRSDLIVDY--------CDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
                 R  +     DL+             K  TI   S GE+ +  + +  A  RL   
Sbjct: 1007 VFGGGRAYLALTEDDLLETGVTIMAQPPGKKNSTIHLLSGGEKALTALSLVFAIFRL--- 1063

Query: 310  TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                AP  +LDE+ A LD+       R++ ++   +
Sbjct: 1064 --NPAPFCMLDEVDAPLDDANVERFCRLLKEMSQSV 1097


>gi|71414964|ref|XP_809565.1| structural maintenance of chromosome (SMC) [Trypanosoma cruzi
          strain CL Brener]
 gi|70873967|gb|EAN87714.1| structural maintenance of chromosome (SMC), putative [Trypanosoma
          cruzi]
          Length = 1172

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY- 61
          +++K + I  F++YA  +             G NG GK+NI +A+ F+      +R    
Sbjct: 1  MRVKSIVIDGFKSYAHRKALEDLSPHFNAITGLNGSGKSNIFDAVCFVMGITNLKRVRAE 60

Query: 62 --ADVT-RIGSPSFFSTFARVE 80
             ++  R G+    +    +E
Sbjct: 61 DPRELIFRAGTTGVHAARVTIE 82


>gi|260944566|ref|XP_002616581.1| hypothetical protein CLUG_03822 [Clavispora lusitaniae ATCC 42720]
 gi|238850230|gb|EEQ39694.1| hypothetical protein CLUG_03822 [Clavispora lusitaniae ATCC 42720]
          Length = 425

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 3/104 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYADV 64
           I  L I  F  Y+           + +G NG GK+  + A+     GR    +R +   +
Sbjct: 28  ITLLRIWNFTTYSYGEFKLSPTLNMIIGPNGTGKSTFVAAVCLGLGGRVDLIKRKNMDSM 87

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            + G          ++  EG  D+ I+  +         +IN  
Sbjct: 88  IKSGEKEC-RIEITLKDEEGSPDVVIERISHLKSVRSTWRINGE 130


>gi|146279542|ref|YP_001169700.1| ATP-dependent exoDNAse beta subunit [Rhodobacter sphaeroides ATCC
          17025]
 gi|145557783|gb|ABP72395.1| ATP-dependent exoDNAse (exonuclease V) beta subunit (contains
          helicase and exonuclease domains)-like protein
          [Rhodobacter sphaeroides ATCC 17025]
          Length = 657

 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 6/61 (9%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRR 58
          +KI+ + +S FR +    + +  +   T  VG+NG GKT +  A++ L    +  R  R+
Sbjct: 1  MKIETITLSNFRCFGADPVVISLEENLTALVGNNGSGKTAVFMALARLFGATAAQRALRK 60

Query: 59 A 59
          +
Sbjct: 61 S 61


>gi|324998568|ref|ZP_08119680.1| recombination and DNA repair protein [Pseudonocardia sp. P1]
          Length = 557

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/362 (16%), Positives = 118/362 (32%), Gaps = 68/362 (18%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRR 58
           M + ++I+ L + +        L  D   T+  G+ G GKT  +  ++ L  GR    R 
Sbjct: 5   MLSEMRIQGLGVID-----DATLELDPGLTVLTGETGAGKTMAVTGLNLLGGGRAESSRV 59

Query: 59  ASYADVT----RIGSPSFFSTFARVEGMEGLADISI---KLETRDDRSVRCLQINDVVIR 111
           ++ A       R  +       A   G E   D ++   +  + D  S   L    V   
Sbjct: 60  SAGARRAVVEGRFTASPGALALAEEVGAEADDDGTLIAARTVSADGGSRAHLGGRSVPNG 119

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
           V+  L +            R+  G   ++R  LDR  FA DP     +  +  +      
Sbjct: 120 VLGRLAEAQLAVHGQNDQLRLLRGS--DQRALLDR--FAGDPV-ATPLAAYRAV------ 168

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                   + W   +     EL  + + AR   +   + ++   + + +           
Sbjct: 169 -------RAEWLEVVT----ELAERRDNARR--LAQEADMLRHGLAEID----------- 204

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
                         + A+++ +   + S +  T +    SD      D     A G  G+
Sbjct: 205 -SVDPQPGEDRALVDQARRMVEADDLRSAAEGTRMALSGSD------DGETPGAVGLAGQ 257

Query: 292 QKVVL----------VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
            K +           +G  LA A  +         + LD + A  D ++ + +     ++
Sbjct: 258 AKGLAEGSDDPALAGLGPRLAEAIAVLADAAAEVSVYLDGLDA--DPERLSQVLARQAEL 315

Query: 342 GS 343
            S
Sbjct: 316 KS 317


>gi|298524781|ref|ZP_07012190.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
 gi|298494575|gb|EFI29869.1| conserved hypothetical protein [Mycobacterium tuberculosis
          94_M4241A]
          Length = 841

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R  A   + F D    +  G N +GK++++EA+  L
Sbjct: 1  MKLHRLALTNYRGIAHRDVEFPDHGVVVVCGANEIGKSSMVEALDLL 47


>gi|312139855|ref|YP_004007191.1| DNA repair protein recn [Rhodococcus equi 103S]
 gi|311889194|emb|CBH48508.1| DNA repair protein RecN [Rhodococcus equi 103S]
          Length = 591

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 36/225 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I      +S    F    T+  G+ G GKT ++ ++  LS  R     + A   R
Sbjct: 2   LSEIRIDNLGAISSASAQFHEGLTVLTGETGAGKTMVVTSLHLLSGAR-----ADAGRVR 56

Query: 67  IGSPSFFSTF-ARVEGMEGLADISI-------KLETRDDRSVRCLQINDVVIRVVDELNK 118
           +G+          V+G     D  +         E  +D S+  ++      R    L  
Sbjct: 57  VGAARAVVEGRFSVDGSSQQIDREVTRLLESCGAERDEDGSIIAVRTVGGDGRSRAHLGG 116

Query: 119 --HLRISWLVPSMDRIFSGLSMERRRFL--DRMVFAIDPRHRR-----RMIDFERLMRG- 168
                      +   +      ++ R L  D+ + A+D R         +  + +L    
Sbjct: 117 RSIPAGVLSEFTDPLLTVHGQNDQLRLLRPDQQLAALD-RFADKTVGPLLSRYGKLRSEW 175

Query: 169 ---RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
              RN LL               ++A+   ++  A +E I+ ++ 
Sbjct: 176 AEARNELLERTSR--------TRELAQEADQLTFA-LEEIDRIAP 211


>gi|29375566|ref|NP_814720.1| DNA repair protein RecN [Enterococcus faecalis V583]
 gi|227555094|ref|ZP_03985141.1| DNA repair protein RecN [Enterococcus faecalis HH22]
 gi|307275468|ref|ZP_07556610.1| DNA repair protein RecN [Enterococcus faecalis TX2134]
 gi|29343027|gb|AAO80790.1| DNA repair protein RecN [Enterococcus faecalis V583]
 gi|227175762|gb|EEI56734.1| DNA repair protein RecN [Enterococcus faecalis HH22]
 gi|306507856|gb|EFM76984.1| DNA repair protein RecN [Enterococcus faecalis TX2134]
 gi|315168049|gb|EFU12066.1| DNA repair protein RecN [Enterococcus faecalis TX1341]
 gi|315574271|gb|EFU86462.1| DNA repair protein RecN [Enterococcus faecalis TX0309B]
 gi|315581574|gb|EFU93765.1| DNA repair protein RecN [Enterococcus faecalis TX0309A]
          Length = 557

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 101/288 (35%), Gaps = 37/288 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKKLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + + A+  ++ +   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              +L G  D   D+   ++ E     L     +DS  +        +
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE-----LASIESLDSEYKTLSDTVQNA 275


>gi|116179608|ref|XP_001219653.1| hypothetical protein CHGG_00432 [Chaetomium globosum CBS 148.51]
 gi|88184729|gb|EAQ92197.1| hypothetical protein CHGG_00432 [Chaetomium globosum CBS 148.51]
          Length = 1053

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I+ +    F  +  L           VG+NG GK+ IL AI+    G+     R  S   
Sbjct: 137 IESVTCVNFMCHVRLHCELGPLLNFIVGENGSGKSAILTAITLCLGGKASSTNRGGSLKS 196

Query: 64  VTRIGSPSFF 73
             + G     
Sbjct: 197 FVKEGCERAV 206


>gi|330887833|gb|EGH20494.1| ATP binding protein [Pseudomonas syringae pv. mori str. 301020]
          Length = 416

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
            +R +    + FD   TI +  NG GKT IL+A
Sbjct: 2  QNYRCFGEFEIDFDPHLTILIASNGGGKTTILDA 35


>gi|312880557|ref|ZP_07740357.1| ATPase [Aminomonas paucivorans DSM 12260]
 gi|310783848|gb|EFQ24246.1| ATPase [Aminomonas paucivorans DSM 12260]
          Length = 379

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/382 (14%), Positives = 116/382 (30%), Gaps = 79/382 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR--ASYADV 64
           ++ L ++ FR   +  + F +   + +G NG GK+ + + +  +   R F    A   +V
Sbjct: 2   LRRLYVNHFRCLVNFEVKFGS-LHLIMGANGCGKSTVFDIVDRI---RRFVTNGAKVTEV 57

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                    S  AR E         + +E         L I     R  +          
Sbjct: 58  --FPPEDLTSWVARDE-----QRFEVDVEGNGGLYAYRLAIGHTKDRKKER--------- 101

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAID----PRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            V   + +F+G  + R       +F  D    P +      +  L      +        
Sbjct: 102 -VDLEELLFNGNPLFRYEQGSVHLFHDDHEPGPIYPFDWS-YSSL---STIISRSDNTKL 156

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           +W  +   QM                 L  L  +     +    +L  +G     +   +
Sbjct: 157 TWFKNWLEQMI---------------ILKPLPQDMTALASEESSRLEYSGANFASW---Y 198

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG------------- 287
             L +E+  ++F         +  + G +   L  +   + + +                
Sbjct: 199 RYLSQEHQDRIFSLINR---LKEIVPGFYSFKLEQEGNTRVLRVGFADEEIHGSSPFYFD 255

Query: 288 ----STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-- 341
               S G++ ++++        L+ +  G    L LDE   +L  D+       ++D+  
Sbjct: 256 FDRLSDGQRILLVL------YSLLCDVEGQHRTLFLDEPGNYLSIDEIQPWLVELSDLCA 309

Query: 342 --GSQIFMTGTDKSVFDSLNET 361
               Q  +   +  + D L   
Sbjct: 310 EEEVQAVLISHNPELIDYLGGA 331


>gi|118787977|ref|XP_316422.3| AGAP006388-PA [Anopheles gambiae str. PEST]
 gi|27227576|emb|CAD59405.1| SMC3 protein [Anopheles gambiae]
 gi|116127058|gb|EAA11190.3| AGAP006388-PA [Anopheles gambiae str. PEST]
          Length = 1201

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   FD +H + VG NG GK+N   AI F
Sbjct: 1  MHIKQVIIQGFKSYREQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQF 47



 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQI 345
            S G++ +V + +  A           AP  L DEI   LD   R+A+  ++ +    +Q 
Sbjct: 1100 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRSAVADMIHEQSDRAQ- 1153

Query: 346  FMTGT 350
            F+T T
Sbjct: 1154 FITTT 1158


>gi|76799067|ref|ZP_00781259.1| DNA repair protein RecN [Streptococcus agalactiae 18RS21]
 gi|76585582|gb|EAO62148.1| DNA repair protein RecN [Streptococcus agalactiae 18RS21]
          Length = 502

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 95/278 (34%), Gaps = 37/278 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIEEISLNFETGMTVLTGETGAGKSIIIDAMNMMLGSR-----ASVEVIR 56

Query: 67  IGS-----PSFFST--------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
            G+       FFS              G+E   ++ I+ E          +IN  ++   
Sbjct: 57  HGANKAEIEGFFSVEKNQSLVQLLEENGIELADELIIRREIFQ-NGRSVSRINGQMVNLS 115

Query: 112 --------VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                   +VD   +H +   + P+M  +          F +     I  R++     + 
Sbjct: 116 TLKAVGHYLVDIHGQHDQEELMKPNMHILMLD------EFGNTEFNVIKERYQSLFDAYR 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE--MINALSSLIMEYVQKENF 221
           +L +           + S    +E Q+AE+      +  +  ++     L+      +  
Sbjct: 170 QLRKRVLDKQKNEQENKSRIEMLEFQIAEIESVALKSDEDQTLLKQRDKLMNHKNIADTL 229

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            +  L L             A+ +  A + FD    D 
Sbjct: 230 TNAYLMLDNEEFSSLSNVRSAMNDLMALEEFDREYKDL 267


>gi|298294365|ref|YP_003696304.1| chromosome segregation protein SMC [Starkeya novella DSM 506]
 gi|296930876|gb|ADH91685.1| chromosome segregation protein SMC [Starkeya novella DSM 506]
          Length = 1150

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K   L +  F+ +     ++ +   T  VG NG GK+N++EA+ ++   S  +  R   
Sbjct: 1   MKFTRLRLVGFKTFVEPTEMLIEPGLTGIVGPNGCGKSNLVEAMRWVMGESSYKAMRAEG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       V+  E  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFGGTTTRPARNTAEVVLVVDNAERSAPAVFNDADLLEISRRIEREAGSSYRINGR 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          PSM R      I       RRR L+
Sbjct: 121 EVRARDVQILFADASSGSRSPSMVRQGQIGEIVGAKPAARRRILE 165



 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 8/80 (10%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  +++  S GEQ +  + +  A        T  API +LDE+ A LD+        +
Sbjct: 1040 GKKPQSLSLLSGGEQALTAMALIFAVF-----LTNPAPICVLDEVDAPLDDANVERFCNL 1094

Query: 338  VTDIGSQI---FMTGTDKSV 354
            + ++       F+T T   +
Sbjct: 1095 LDEMRRLTETRFVTITHNPI 1114


>gi|268316211|ref|YP_003289930.1| chromosome segregation protein SMC [Rhodothermus marinus DSM
          4252]
 gi|262333745|gb|ACY47542.1| chromosome segregation protein SMC [Rhodothermus marinus DSM
          4252]
          Length = 1185

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAI 47
          + +  L +  F+++A    L FD   T  VG NG GK+N+++A+
Sbjct: 1  MYLSKLELQGFKSFADRTVLHFDPGITAIVGPNGCGKSNLVDAV 44


>gi|257865773|ref|ZP_05645426.1| DNA repair protein RecN [Enterococcus casseliflavus EC30]
 gi|257872108|ref|ZP_05651761.1| DNA repair protein RecN [Enterococcus casseliflavus EC10]
 gi|257799707|gb|EEV28759.1| DNA repair protein RecN [Enterococcus casseliflavus EC30]
 gi|257806272|gb|EEV35094.1| DNA repair protein RecN [Enterococcus casseliflavus EC10]
          Length = 557

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 99/297 (33%), Gaps = 51/297 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F   ++L L F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRG-----SSDYLR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE---------TRDDRSVRCLQINDVVIRV 112
            G+        F    + E  E  AD+ I  E         ++  +++  +    V + V
Sbjct: 57  QGAEKCRLEGIFEWPNQQEFKELTADLGIDEEEVLIVQRDISQSGKTICRVNGRTVTLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRR----FLDRMVFAIDPRHRRRMIDFERLMR- 167
           + ++   L           +      +       F D    A    +R+    +  L + 
Sbjct: 117 LRQIGLFLVDIQGQNEHQELLQ--PEKHLALMDGFGDDAFKAELANYRQAYQAYRSLEKH 174

Query: 168 ------------GRNRLLTEGY---FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
                        R  +L         +    + E Q+ +   K+     ++++AL    
Sbjct: 175 VRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEEQLIDEREKLTN-YQKIVDALGQSY 233

Query: 213 MEYVQKE-------NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
                +E       +    ++     LD  +++   A++  Y   L      D   +
Sbjct: 234 GALSAEEVNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYY--LLQDAATDISRQ 288


>gi|238026821|ref|YP_002911052.1| hypothetical protein bglu_1g11800 [Burkholderia glumae BGR1]
 gi|237876015|gb|ACR28348.1| Hypothetical protein bglu_1g11800 [Burkholderia glumae BGR1]
          Length = 477

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +  L +  F+N   + + F    T   G NGVGK+N+ +AI+FL     
Sbjct: 2  LTRLKVVGFKNLRKIDIQFG-LFTCIAGANGVGKSNLFDAITFLCDLAS 49


>gi|187932800|ref|YP_001886968.1| hypothetical protein CLL_A2780 [Clostridium botulinum B str. Eklund
           17B]
 gi|187720953|gb|ACD22174.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 656

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 6/110 (5%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           K+K L +  F+    L + F    T  +G+NG GK+ I +  ++L  G+        ++ 
Sbjct: 3   KLKKLELKNFKGIKDLTVTFG-TVTTILGENGTGKSTIFDGFNWLLFGKDSHDKKDFEIQ 61

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            +   +       + G+E      + +   +    R  +      R   E
Sbjct: 62  TLDGNNDV-----IHGLEHYVTGYLDIGGTEKTFKRTYKEKWQKTRGSAE 106


>gi|296155961|ref|ZP_06838800.1| SMC domain protein [Burkholderia sp. Ch1-1]
 gi|295893467|gb|EFG73246.1| SMC domain protein [Burkholderia sp. Ch1-1]
          Length = 874

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 4/195 (2%)

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL-TGFLD 233
           E        + + +Q+  +G      R+  + A          + +     LSL    L 
Sbjct: 675 EQNERQVRIAGLRSQLETVGASGLGERLAALEARVEQATRRKDELSLRASALSLLDEVLV 734

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            + D +   L+    ++L    K         +G   S   +D   +A T+   S G ++
Sbjct: 735 DERDAAVAQLRAPLTERLGHYLKRIFPQSTIALGDDLSPATLDRYGRADTLDALSFGTRE 794

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGTD 351
            + +   LA+A L+   +G   +L+LD+ + H D  +R+A+ R +       QI +    
Sbjct: 795 QLGILTRLAYADLLK-ASGRPTLLMLDDAAVHTDAARRDAIKRALIDAATRHQILVFTCH 853

Query: 352 KSVFDSLNETAKFMR 366
             ++D L    + + 
Sbjct: 854 PELWDDLGVRQRAIE 868



 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +K++ + I EF+ +    +         +FVG N  GK+ I EA+  +   R ++ +   
Sbjct: 1  MKLQSIAIQEFKQFTGRLVIDDLQPGLNLFVGPNEAGKSTIAEAVRAVFLER-YKASHLK 59

Query: 63 DVTRIGSPSF 72
          D+   G  S 
Sbjct: 60 DLLPWGKASG 69


>gi|258623465|ref|ZP_05718468.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584280|gb|EEW09026.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 543

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ + I+ FR    L L FD   T  +G+N  GK+++L+A+S + P  G
Sbjct: 1  MHLERIEIAGFRGIRRLSLTFDE-ITTLIGENTWGKSSLLDALSVVLPADG 50


>gi|156376571|ref|XP_001630433.1| predicted protein [Nematostella vectensis]
 gi|156217454|gb|EDO38370.1| predicted protein [Nematostella vectensis]
          Length = 1054

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 91/294 (30%), Gaps = 45/294 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I+ + +  F  +  L +         +G NG GK+ I+ A+     G+     R +S   
Sbjct: 5   IEKVTLVNFMCHTMLEVPLGPNVNFIIGRNGSGKSAIMTALVVGLGGKATVTSRGSSLKG 64

Query: 64  VTRIGSP-SFFSTFARVEGMEG--------LADISIKLETRDDRSVRCLQINDVVIRV-- 112
             +     +  S   R  G++            +  ++ +    S +    +   +    
Sbjct: 65  FIKEHCHYALISIKLRNRGLDAYCKDKYGPSITVERRINSDGSGSYKLKSHSGKTVSTKK 124

Query: 113 --VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRMI 160
             ++ +     I    P        S + + S    ++ +F      +  I   ++  + 
Sbjct: 125 EELNHILDQFNIQVDNPISVLNQDTSRNFLNSSDPKDKYKFFLKATQLEQISDDYQMVLT 184

Query: 161 DFERL--MRGRNR-----------LLTEGYFDSSWCSSIEAQMAEL-----GVKINIARV 202
             E +  M  +             +L   Y D     +++ Q+ EL       ++     
Sbjct: 185 HQEVINDMLEKKAKMIPITEKEVKILENKYNDLKQLRTMKDQVEELKKERAWAEVIE-YE 243

Query: 203 EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           + +  L   +     K      K+        + +    A++ E    L + R+
Sbjct: 244 KRLGPLEREVKSKQDKLPRYEAKVEECNAEVLRLESESQAIEAEIETVLKEARE 297


>gi|153824559|ref|ZP_01977226.1| DNA repair protein RecN [Vibrio cholerae MZO-2]
 gi|254285530|ref|ZP_04960494.1| DNA repair protein RecN [Vibrio cholerae AM-19226]
 gi|149741777|gb|EDM55806.1| DNA repair protein RecN [Vibrio cholerae MZO-2]
 gi|150424392|gb|EDN16329.1| DNA repair protein RecN [Vibrio cholerae AM-19226]
          Length = 554

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +        +
Sbjct: 117 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHADLLKATRHAY-QNWRQASNQL 173

Query: 167 RG 168
           + 
Sbjct: 174 KQ 175


>gi|153802053|ref|ZP_01956639.1| DNA repair protein RecN [Vibrio cholerae MZO-3]
 gi|254225094|ref|ZP_04918708.1| DNA repair protein RecN [Vibrio cholerae V51]
 gi|262191961|ref|ZP_06050127.1| DNA repair protein RecN [Vibrio cholerae CT 5369-93]
 gi|124122412|gb|EAY41155.1| DNA repair protein RecN [Vibrio cholerae MZO-3]
 gi|125622481|gb|EAZ50801.1| DNA repair protein RecN [Vibrio cholerae V51]
 gi|262032136|gb|EEY50708.1| DNA repair protein RecN [Vibrio cholerae CT 5369-93]
          Length = 554

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +        +
Sbjct: 117 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHADLLKATRHAY-QNWRQASNQL 173

Query: 167 RG 168
           + 
Sbjct: 174 KQ 175


>gi|146312737|ref|YP_001177811.1| recombination and repair protein [Enterobacter sp. 638]
 gi|145319613|gb|ABP61760.1| DNA replication and repair protein RecN [Enterobacter sp. 638]
 gi|190341567|gb|ACE74860.1| RecN [Enterobacter sp. 638]
          Length = 553

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 87/274 (31%), Gaps = 46/274 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFLSGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDIVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  SGANRADLCARFSLKDTPAALRWLEANQLEDGRECLLRRVISNDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLMR 167
           + EL + L       +  ++      +++  LD       +  +   H R+     R + 
Sbjct: 117 LRELGQLLIQIHGQHAHQQLIK--PEQQKSLLDGYAGEYALTQLMAEHYRQWHQSCRELA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
              +   E    +        Q+ E             N     + E+ ++ +  + +L+
Sbjct: 175 QHQQQSQERLARAELLEY---QLKEF------------NEFQPQLGEF-EQIDEEYKRLA 218

Query: 228 LTGFLDGKFDQSFCALKE----EYAKKLFDGRKM 257
            +G L     Q+   L +        +L+  R+ 
Sbjct: 219 NSGHLISTSQQALNLLADGEDVNLQSQLYSVRQQ 252


>gi|121726042|ref|ZP_01679341.1| DNA repair protein RecN [Vibrio cholerae V52]
 gi|121631524|gb|EAX63894.1| DNA repair protein RecN [Vibrio cholerae V52]
          Length = 554

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +        +
Sbjct: 117 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHADLLKATRHAY-QNWRQASNQL 173

Query: 167 RG 168
           + 
Sbjct: 174 KQ 175


>gi|302389859|ref|YP_003825680.1| DNA repair protein RecN [Thermosediminibacter oceani DSM 16646]
 gi|302200487|gb|ADL08057.1| DNA repair protein RecN [Thermosediminibacter oceani DSM 16646]
          Length = 576

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/237 (19%), Positives = 76/237 (32%), Gaps = 42/237 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I +F     + + F     I  G+ G GK+ I++AI  +    G R +S  +  R
Sbjct: 2   LLKLIIKDFALIDDIEIDFKRGLNILTGETGAGKSIIIDAIGMIL---GERASS--EYIR 56

Query: 67  IGSPSF------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRV 112
            G  S              S F R  G+E   +  I      D+     +IN     +  
Sbjct: 57  SGKESSVIEAVFEYDNEQVSAFLRELGIEEEDNTLIISRQITDQGKNYCRINGKSVPVSA 116

Query: 113 VDELNKHL--------RISWLVP----SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
           +  L K+L          S L P     M  +  G  +     + + V     R    + 
Sbjct: 117 LKNLGKYLIDIHGQHQHQSLLNPERHLEMLDLLGGDEIAN---VKKQVGQYYRRILDTVY 173

Query: 161 DFERLMRGRNRLLTEG--------YFDSSWCSSIEAQMAELGVKINIARVEMINALS 209
             E L R R                 + +     E  M E   +I     +++  L+
Sbjct: 174 RLETLKRSREEFFRYREQLQFEIEELERAQLKPQEDVMLEEEREILAHSEKILKNLN 230


>gi|302338050|ref|YP_003803256.1| DNA repair protein RecN [Spirochaeta smaragdinae DSM 11293]
 gi|301635235|gb|ADK80662.1| DNA repair protein RecN [Spirochaeta smaragdinae DSM 11293]
          Length = 562

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/252 (18%), Positives = 84/252 (33%), Gaps = 28/252 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  +    S  L F    T+  G+ G GK+ ++ A+S L  G+G       +  R
Sbjct: 2   LETLTIRGYALIDSANLDFSEHLTVLSGETGAGKSILIGALSLLLGGKG-----DTESIR 56

Query: 67  IGSPSF-FSTFARVEGMEG----LADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           IGS     +   RV+  +G    LAD  I  E       R L+ N           +   
Sbjct: 57  IGSEEAEITAMVRVDSCDGALGWLADHDISDEDGAVLLRRVLKRNG----RGSSFIQSTP 112

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
            +       R  +G       FL  +    + +    + D  RL+  R   L E   + +
Sbjct: 113 ATL---KDLRDLTG-------FLFDLHGQHEHQSLFSV-DNHRLLLDRFAGLEERAGEVA 161

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
              +    +  L  ++   R +  + L    +           KL      +   ++   
Sbjct: 162 SLFT---SLTSLHKELESLRSDERDLLRERDILEYAIHEIDESKLVPGEEEELTRERDLL 218

Query: 242 ALKEEYAKKLFD 253
           +  E+    L  
Sbjct: 219 SQSEKLFSLLEQ 230


>gi|325981036|ref|YP_004293438.1| hypothetical protein NAL212_0323 [Nitrosomonas sp. AL212]
 gi|325530555|gb|ADZ25276.1| hypothetical protein NAL212_0323 [Nitrosomonas sp. AL212]
          Length = 650

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-----RRA 59
           +K+   +I+ FR+         +  T  VG N  GKT IL+A+  + P   F     R  
Sbjct: 1   MKLISAHITNFRSIEDSNQFEISDLTCLVGKNEAGKTAILQALYGVKPFGNFEYDKIRDY 60

Query: 60  SYADVTRIGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
               ++R     P   S     E     ADI +  +     +++  +I
Sbjct: 61  PRRYLSRFDERHPDGISKVIETEWELSEADIRLISDRFGQEALKSSEI 108


>gi|262198165|ref|YP_003269374.1| hypothetical protein Hoch_4992 [Haliangium ochraceum DSM 14365]
 gi|262081512|gb|ACY17481.1| hypothetical protein Hoch_4992 [Haliangium ochraceum DSM 14365]
          Length = 380

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--------SPGRGF 56
          ++I       FR++  + L       IF G NGVGK+NIL A+  L           RGF
Sbjct: 1  MRITAFWAKGFRSFDDMHLDGLGAFNIFYGPNGVGKSNILAAMKTLFGQLAWRSEAARGF 60

Query: 57 R 57
          R
Sbjct: 61 R 61


>gi|227544386|ref|ZP_03974435.1| DNA repair protein RecN [Lactobacillus reuteri CF48-3A]
 gi|300909753|ref|ZP_07127214.1| DNA repair protein RecN [Lactobacillus reuteri SD2112]
 gi|227185649|gb|EEI65720.1| DNA repair protein RecN [Lactobacillus reuteri CF48-3A]
 gi|300893618|gb|EFK86977.1| DNA repair protein RecN [Lactobacillus reuteri SD2112]
          Length = 559

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 65/198 (32%), Gaps = 23/198 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L F  Q T+  G+ G GK+ I++A+  L+ GRG       +  R
Sbjct: 2   LQELTIDNLAIIKHLTLTFADQMTVLTGETGAGKSIIIDAVGLLAGGRG-----SQEFIR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
            G                 F       G++    I I            +++N  +I   
Sbjct: 57  RGEEKLSLQGQFAIPDDPEFDKLLESLGIDHEDGILIVSREIHRNGRNIIRVNGQLINTA 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA-IDPRHRRRMIDFERLMRGRN 170
            + ++   L          ++           LD+     + P  ++   +++   + + 
Sbjct: 117 TLRQIGAGLVDIQGQNEHQQLMQ--PETHLGMLDQFAAKEVQPLLQKYQEEYQAYSKLKA 174

Query: 171 RLLTEGYFDSSWCSSIEA 188
            +  +   +  W   ++ 
Sbjct: 175 AVNKKQANEQQWAQRLDM 192


>gi|218680062|ref|ZP_03527959.1| chromosome partition protein [Rhizobium etli CIAT 894]
          Length = 115

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
          +K   L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1  MKFNKLRLVGFKSFVEPTEFIIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MDDVIFSGS 69


>gi|261342046|ref|ZP_05969904.1| DNA repair protein RecN [Enterobacter cancerogenus ATCC 35316]
 gi|190341505|gb|ACE74829.1| RecN [Enterobacter cancerogenus]
 gi|288315702|gb|EFC54640.1| DNA repair protein RecN [Enterobacter cancerogenus ATCC 35316]
          Length = 553

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 66/207 (31%), Gaps = 31/207 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+      R     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGSR-----AEGDMVR 56

Query: 67  IGSPS-------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     +E   +  ++     D   R   IN   V + 
Sbjct: 57  TGANRADLCARFSLKDTPAALRWLEANQLEDGRECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +  ++      +++  LD       +  +   H R+     R +
Sbjct: 116 QLRELGQLLIQIHGQHAHQQLIK--PEQQKALLDGYAGEYALTQLMADHYRQWHQSCREL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               +   E    +        Q+ EL
Sbjct: 174 AQHQQQSQERAARAELLEY---QLKEL 197


>gi|171060159|ref|YP_001792508.1| DNA repair protein RecN [Leptothrix cholodnii SP-6]
 gi|170777604|gb|ACB35743.1| DNA repair protein RecN [Leptothrix cholodnii SP-6]
          Length = 567

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 76/246 (30%), Gaps = 31/246 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L++ +F    +L + F A   +  G+ G GK+ +++A+     GRG      + V R
Sbjct: 2   LKRLSLRDFVIVTTLEVDFSAGFAVLTGETGAGKSILIDALQLALGGRG-----DSGVVR 56

Query: 67  IGSPSFF----------STFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVV 113
            G+              +  A ++      D S+ L    D   +    IN     +  +
Sbjct: 57  EGATRAEISAEFEPVDPALTAWLDEAGFGTDDSLLLRRTVDAQGKSRAWINGSSATVAQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER------LMR 167
            EL + L    +               R  LD           +    +          R
Sbjct: 117 RELGEQL--VDIHGQHAWQSLTRPASVRALLDAYAGLDTGALAQAWAQWREHQTRLDSAR 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            R   +       +W     A++A    +        +NA    +       +   + L 
Sbjct: 175 ERGGEIERERERLAWQIGELAKLAPAADEWAE-----LNAEHERLAHAQAILDATQLALH 229

Query: 228 LTGFLD 233
           LT   D
Sbjct: 230 LTSEAD 235


>gi|99080533|ref|YP_612687.1| DNA repair protein RecN [Ruegeria sp. TM1040]
 gi|99036813|gb|ABF63425.1| DNA repair protein RecN [Ruegeria sp. TM1040]
          Length = 549

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A + R
Sbjct: 2  LRALDIRDLLIIDHLELSFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAALVR 56

Query: 67 IGSPSFFSTFARVEGMEGLA 86
           G+       A  +  EG A
Sbjct: 57 QGADQG-EVVAEFDLPEGHA 75


>gi|330936886|ref|XP_003305520.1| hypothetical protein PTT_18385 [Pyrenophora teres f. teres 0-1]
 gi|311317414|gb|EFQ86377.1| hypothetical protein PTT_18385 [Pyrenophora teres f. teres 0-1]
          Length = 1287

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L I  F++Y      L  D+  T  +G NG GK+N ++AISF+   R    R    
Sbjct: 3  KLVRLEIYNFKSYRGRHTLLFGDSYFTSIIGPNGSGKSNSMDAISFVLGVRSSHLRSEKL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 KDMVYRG 69


>gi|302916255|ref|XP_003051938.1| hypothetical protein NECHADRAFT_92410 [Nectria haematococca mpVI
           77-13-4]
 gi|256732877|gb|EEU46225.1| hypothetical protein NECHADRAFT_92410 [Nectria haematococca mpVI
           77-13-4]
          Length = 1163

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +  L +         VG+NG GK+ +L A++    G+     R  S   
Sbjct: 121 VESITCYNFMCHERLHVELGPLINFIVGENGSGKSAVLTALTLCLGGKASDTNRGGSLKS 180

Query: 64  VTRIGSPSF 72
             + G    
Sbjct: 181 FVKEGREQG 189


>gi|239501314|ref|ZP_04660624.1| SMC domain protein [Acinetobacter baumannii AB900]
          Length = 641

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYA 62
          ++++ L IS F+++ +        Q T  +G NG GKT  L+A+    +     RR + +
Sbjct: 1  MQLQSLRISNFQSFGATPTELSLEQITYLIGPNGSGKTASLQALCRLFAFDPSLRRITRS 60

Query: 63 D 63
          D
Sbjct: 61 D 61


>gi|115373581|ref|ZP_01460877.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|115369423|gb|EAU68362.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
          Length = 457

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          +  L +  F++   + + F    T   G N VGK+N+ +AI FL      
Sbjct: 2  LTRLKVEGFKSLLDVDIHFGP-FTCIAGMNAVGKSNLFDAIRFLHLLTRH 50


>gi|49475846|ref|YP_033887.1| DNA repair protein recn [Bartonella henselae str. Houston-1]
 gi|49238654|emb|CAF27900.1| DNA repair protein recn [Bartonella henselae str. Houston-1]
          Length = 553

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 92/269 (34%), Gaps = 34/269 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I       +L + F A  ++  G+ G GK+ +L+A+S    GRG      A + R
Sbjct: 2   LIQLSIHNIVLIETLDIHFRAGLSVLTGETGAGKSILLDALSLALGGRG-----DASLVR 56

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G      T               R  G +   DI ++     D   R    + V    +
Sbjct: 57  HGVDRGQVTAVFDVPVSHSVRQLIRENGFDDEGDIILRRVQLSDGRSRVFINDQVASVAL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRG 168
                   +       +R    +    R+ LD      D      +  R   +FE+ ++ 
Sbjct: 117 MRHVGRQLVEIHGQHDNRALVDV-DTHRQLLDAFGGLEDETENLRQCYRIWREFEKRLQQ 175

Query: 169 R-----NRLLTEGYFDS--SWCSSIEAQMAELGVKINIARVEM--INALSSLIMEYVQKE 219
           +     N L    Y  +       ++ Q+ E    +++ R +M  +  +++ I E     
Sbjct: 176 QRLKVENALREADYLRACVQELEKLDFQVGEEDA-LSLRRADMLKLEKIATDIKEADDLL 234

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
             P   + +   L  + ++     +E  A
Sbjct: 235 TGPKSPIPVLSNLVRRLERKIPEAQELIA 263


>gi|34764252|ref|ZP_00145101.1| DNA repair protein recN [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
 gi|27885973|gb|EAA23300.1| DNA repair protein recN [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256]
          Length = 558

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 86/286 (30%), Gaps = 33/286 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ ++ L I        L + FD    +  G+ G GK+ IL  I+ L   +     +
Sbjct: 1   MGRKLMLRELKIGNLAIIDELDIEFDKGFIVLTGETGAGKSIILSGINLLIGEK-----A 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+ R G  +  +        E       KLET          I         +    +
Sbjct: 56  SVDMIRDGEENLVAQGVFDVDEEQKK----KLETMGIDIDGDEIIIRRSYSRSGKARAFV 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
               +  +  +  +         L  +V     +      +  +L+              
Sbjct: 112 NNVRITLADLKEIAST-------LVDIVGQHSHQMLLNKNNHIKLL-------------D 151

Query: 181 SWCSSIEAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
           S+ S  E  + E    +     E+   +  +     E ++K+ F   +L     L  K  
Sbjct: 152 SFLSKDEKDLKENLANLLSKYREINTKMEDIEREKRETLEKKEFYEYQLEEIEKLKLKDG 211

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
           +    L+ EY +     +  + +        +  D  +     +I 
Sbjct: 212 EDEI-LEAEYKRVFNAEKIREKVYESLEYLKNDDDSALSLITNSIR 256


>gi|282850217|ref|ZP_06259596.1| DNA repair protein RecN [Veillonella parvula ATCC 17745]
 gi|282579710|gb|EFB85114.1| DNA repair protein RecN [Veillonella parvula ATCC 17745]
          Length = 554

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 77/203 (37%), Gaps = 21/203 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + + F+   TIF G+ G GK+ +++A S L    G R +S  +  R
Sbjct: 2   LTQMSIRNFALIEQMNISFNDGITIFTGETGAGKSILMDAFSILL---GERASS--EFIR 56

Query: 67  IGSPSF-------FSTFARVEGMEGLADISIK-----LETRDDRSVRCLQI-NDVVI--R 111
            G  SF        +    ++ +    +I I+     L    +R+ +   + ND  I  +
Sbjct: 57  HGKDSFVIDGIFDIANHQSIQDLLESKNIMIEEGQLILSRSFNRNGKSSILANDQPIPLK 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLS-MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            + E+ ++L       S  R+    +  E     ++        +      +++  +  +
Sbjct: 117 ALKEIGQYLADIHGQYSNQRLLDADTHHEYLDTFNKEGKEAYKAYTDAYKMYKQAKQDVD 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAEL 193
            L       +     +  Q+ E+
Sbjct: 177 YLQENMSERARELDMLRYQIDEI 199


>gi|256832358|ref|YP_003161085.1| DNA repair protein RecN [Jonesia denitrificans DSM 20603]
 gi|256685889|gb|ACV08782.1| DNA repair protein RecN [Jonesia denitrificans DSM 20603]
          Length = 577

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 87/295 (29%), Gaps = 51/295 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + + I  L +         R+ F    T   G+ G GKT +L  +S L   +     +
Sbjct: 1   MLDEMTIDSLGVIH-----RTRMDFSPGLTAITGETGAGKTMVLTGMSLLLGAK-----A 50

Query: 61  YADVTRIGSPSFFS----------TFARVEGMEGLAD-----ISIKLETRDDRSVRCLQI 105
                R+G+                   VE + G  D     I  +      RS   L  
Sbjct: 51  DPATVRVGAQRAVVEGRVTAVSDEVVRTVEEVGGYLDDDGALIISRTVAAAGRSRTHLAG 110

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR----RFLDRMVFAIDPRHRRRMID 161
             V  + + ++ + L    +    D+I       +R     F       +   +R     
Sbjct: 111 RSVPQQTLADVAQEL--VTIHGQSDQIRLKSPARQRAALDEFAGEEFARVLKEYRTAWFR 168

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAE-----------LGVKINIARVEMINALSS 210
              L+   + L+T+    +     +   +AE           + +    AR+  +  L  
Sbjct: 169 RAELVAQLDGLVTQRDERAREAELLRMGLAEVERVEPVSGEDVALAAEAARLSNVQLLRD 228

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRR 263
                        I        DG  D+      L +  A+ L    + D+   R
Sbjct: 229 AAHAAHMCVAGGDI-------ADGGVDELTPVTELLDRAARVLHGVEEHDAELGR 276


>gi|190341491|gb|ACE74822.1| RecN [Citrobacter koseri]
          Length = 553

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 90/251 (35%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----ADADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           +G+      + F+  +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  VGATRADLCARFSLKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKSEHQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
               +   L ++   +R ++ +     +  + Q+      ++ L  +   + ++      
Sbjct: 148 GYANE--ALLIQEMSSRYQLWHQSCRDLAHHQQQSQERAARMELLQYQLKELNEFNPQPG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|157363277|ref|YP_001470044.1| SMC domain-containing protein [Thermotoga lettingae TMO]
 gi|157313881|gb|ABV32980.1| SMC domain protein [Thermotoga lettingae TMO]
          Length = 854

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 3/125 (2%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RASYADVTRI 67
           + I  F       L F     + +G NG GK+++LEAI F   G G R  + S ++  R 
Sbjct: 9   IEIENFLGIKKCNLSFKDGVFLIIGQNGAGKSSLLEAIVFALYGTGVRYGKKSPSEYIRS 68

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
            S S    F+ +       ++  +++          + N VV      ++K LR    + 
Sbjct: 69  RSSSCQIKFSFLRNG-KKYEVIRRIKASGGSEASLSENNAVVTTHRTLVDKELRKIMDIS 127

Query: 128 SMDRI 132
               I
Sbjct: 128 YDSFI 132



 Score = 36.8 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 58/205 (28%), Gaps = 23/205 (11%)

Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
           R          +          E L + R+  + +          +E             
Sbjct: 636 RNLTKISAQQCESLFAELNNTVELLKKQRDNFIRQKAVMEHLIKELEE---------IRR 686

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLS---LTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
             E +  + + I +  Q         S      ++     ++      +    L DGR  
Sbjct: 687 EKENLERIFNQIHKEYQIAQSVKSTFSAREFQSYIAKIVLENILIKVNDILDILTDGRFR 746

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317
                   +    +  +V            S GE+ +V + + ++ A +     G     
Sbjct: 747 --------LSIDENGFVVIDDGTKRNADGLSGGEKTLVSLSLAMSIAEI---AAGQMEAF 795

Query: 318 LLDEISAHLDEDKRNALFRIVTDIG 342
            +DE  + LDED +  + + +  + 
Sbjct: 796 FIDEGFSALDEDNKAKVAQTLKQME 820


>gi|81428297|ref|YP_395297.1| DNA repair and genetic recombination protein N [Lactobacillus
          sakei subsp. sakei 23K]
 gi|78609939|emb|CAI54986.1| DNA repair and genetic recombination protein N [Lactobacillus
          sakei subsp. sakei 23K]
          Length = 567

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I +F     L + FD   T+  G+ G GK+ I++A+  L+ GRG       D  R
Sbjct: 2  LQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGRG-----SQDFIR 56

Query: 67 IGSP 70
           G+ 
Sbjct: 57 TGAK 60


>gi|322700245|gb|EFY92001.1| nuclear condensin complex subunit Smc4 [Metarhizium acridum CQMa
           102]
          Length = 1488

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +RI +  L ++ F++YA    +  F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 209 SRIVLTHLILNNFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 265

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                   +    +      +  VE      
Sbjct: 266 MRQGKISALIHNSAQHPNLEYCEVEVHFQEV 296


>gi|294780574|ref|ZP_06745937.1| DNA repair protein RecN [Enterococcus faecalis PC1.1]
 gi|294452401|gb|EFG20840.1| DNA repair protein RecN [Enterococcus faecalis PC1.1]
          Length = 557

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 32/262 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKKLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + + A+  ++ +   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLRFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
              +L G  D   D+   ++ E
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE 254


>gi|184200376|ref|YP_001854583.1| hypothetical protein KRH_07300 [Kocuria rhizophila DC2201]
 gi|183580606|dbj|BAG29077.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 692

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +++  + I  FR +++  L    Q    +G+N  GK+++L AI +
Sbjct: 1  MRLTNVRIKNFRAHSNTELPL-PQLGCLIGENNAGKSSVLHAIQY 44


>gi|200388167|ref|ZP_03214779.1| RecF/RecN/SMC N domain protein [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
 gi|12719019|gb|AAK02041.1|AF261825_10 putative exonuclease [Salmonella enterica subsp. enterica serovar
          Typhimurium]
 gi|199605265|gb|EDZ03810.1| RecF/RecN/SMC N domain protein [Salmonella enterica subsp.
          enterica serovar Virchow str. SL491]
          Length = 641

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYA 62
          +K+  + IS F+++ +  +       T  +G NG GKT  L+A+    +     RR   +
Sbjct: 1  MKLHSIRISNFQSFGAEPIELTLENITYLIGPNGSGKTAALQALCRLFAFDPSLRRIQRS 60

Query: 63 D 63
          D
Sbjct: 61 D 61


>gi|317046280|ref|YP_004113928.1| SMC domain-containing protein [Pantoea sp. At-9b]
 gi|316947897|gb|ADU67372.1| SMC domain protein [Pantoea sp. At-9b]
          Length = 547

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 8   KFLNISEFRNYASL--RLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
             L +  ++       ++ FD    IFVG NG GKT+I+E++   S  
Sbjct: 67  STLELVNYKGIRKTVKKITFDPHLNIFVGVNGSGKTSIIESLVKASTW 114


>gi|313497883|gb|ADR59249.1| Chromosome segregation protein SMC [Pseudomonas putida BIRD-1]
          Length = 1162

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/330 (16%), Positives = 112/330 (33%), Gaps = 56/330 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIRLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS              F ++   + G     A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSSGRKPVSQASIELVFDNSETTLVGEYAAYAEISIRRKVTRDGQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               E R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEELRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +  ++   R     +     + +  + +  ++     +  + R+      +    EY  +
Sbjct: 170 ISKYKERRRETENRIRRTQENLARLTDLREEL-----ERQLERLHRQAQAAEKYREYKAQ 224

Query: 219 ENFPHIKLSLTGF--LDGKFDQSFCALKEE---YAKKLFDGRKMDSMSRRTLIGPH---- 269
           E     +LS   +  LD +  Q    + ++   +   + + R  D+   R   G H    
Sbjct: 225 ERQMKARLSALRWRDLDEQVRQRESVIGDQGVSHEALVAEQRNADASIERLRDGHHELSE 284

Query: 270 ---RSDLIVDYCDKAITIAHGS--TGEQKV 294
              +           I     S   G+Q++
Sbjct: 285 RFNQVQGRFYSVAGDIARVEQSIQHGQQRL 314


>gi|301775071|ref|XP_002922958.1| PREDICTED: structural maintenance of chromosomes protein 1B-like
          [Ailuropoda melanoleuca]
          Length = 1235

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3  HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKTANLRVKNIQ 62

Query: 63 DVTR 66
          ++  
Sbjct: 63 ELIH 66


>gi|262195692|ref|YP_003266901.1| DNA repair protein RecN [Haliangium ochraceum DSM 14365]
 gi|262079039|gb|ACY15008.1| DNA repair protein RecN [Haliangium ochraceum DSM 14365]
          Length = 605

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L +  F   + + + F     +  G+ G GK+ I+EA++ L  GR     + AD+ R
Sbjct: 2  LRHLRVINFAILSDVAIDFGEGFNVLTGETGAGKSLIVEAVNLLRGGR-----ASADIPR 56

Query: 67 IGSPSFFS 74
           G+     
Sbjct: 57 AGADQAVV 64


>gi|254432485|ref|ZP_05046188.1| chromosome segregation protein SMC [Cyanobium sp. PCC 7001]
 gi|197626938|gb|EDY39497.1| chromosome segregation protein SMC [Cyanobium sp. PCC 7001]
          Length = 1203

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYA 62
          I  + ++ F+++  S+ +  +   T+  G NG GK+NIL+A+ F   L+  RG R     
Sbjct: 4  INQVELTHFKSFGGSMTIPLEQGFTVVTGPNGSGKSNILDAVLFCLGLASSRGMRAERLP 63

Query: 63 DVTR 66
          D+  
Sbjct: 64 DLIN 67


>gi|172055185|ref|YP_001806512.1| putative ATPase [Cyanothece sp. ATCC 51142]
 gi|171701466|gb|ACB54446.1| putative ATPase [Cyanothece sp. ATCC 51142]
          Length = 248

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K L I  +R + +  +   ++  + VG N +GKT++LE I
Sbjct: 17 LKTLTIENYRCFENFSINNLSKINLIVGQNNIGKTSLLEFI 57


>gi|183230377|ref|XP_657185.2| mitotic chromosome and X-chromosome-associated protein [Entamoeba
          histolytica HM-1:IMSS]
 gi|169802951|gb|EAL51799.2| mitotic chromosome and X-chromosome-associated protein, putative
          [Entamoeba histolytica HM-1:IMSS]
          Length = 1151

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
          + I+ + I  F++YA       FD++     G NG GK+NIL+AI F+   +     R  
Sbjct: 1  MFIEEVLIDGFKSYARKTTIGKFDSKFNAITGLNGSGKSNILDAICFVMGIQNLSLVRVQ 60

Query: 60 SYADVT 65
          +  ++ 
Sbjct: 61 TLQELI 66


>gi|27363836|ref|NP_759364.1| recombination and repair protein [Vibrio vulnificus CMCP6]
 gi|27359953|gb|AAO08891.1| DNA repair protein RecN [Vibrio vulnificus CMCP6]
          Length = 554

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 63/208 (30%), Gaps = 26/208 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L        R    IN   +    
Sbjct: 57  QGEDKTEVSAAFLLDNNLHATRWLEDNELLDGSECILRRIITSEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   +D+    ++         +     +  ++
Sbjct: 117 LKALGQLLINIHGQHAHHQLMK--SEHQMAMVDQYAGHLNLLKNTRVAYQNWRQADNHLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGV 195
                  +             ++ EL +
Sbjct: 175 QLQENSLQNQAQKQLLEYQIKELNELAI 202


>gi|15640868|ref|NP_230499.1| recombination and repair protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121585685|ref|ZP_01675480.1| DNA repair protein RecN [Vibrio cholerae 2740-80]
 gi|147673817|ref|YP_001216333.1| recombination and repair protein [Vibrio cholerae O395]
 gi|153818040|ref|ZP_01970707.1| DNA repair protein RecN [Vibrio cholerae NCTC 8457]
 gi|153822045|ref|ZP_01974712.1| DNA repair protein RecN [Vibrio cholerae B33]
 gi|227081028|ref|YP_002809579.1| DNA repair protein RecN [Vibrio cholerae M66-2]
 gi|254847989|ref|ZP_05237339.1| recombination and repair protein [Vibrio cholerae MO10]
 gi|255744652|ref|ZP_05418603.1| DNA repair protein RecN [Vibrio cholera CIRS 101]
 gi|262161217|ref|ZP_06030328.1| DNA repair protein RecN [Vibrio cholerae INDRE 91/1]
 gi|262168721|ref|ZP_06036416.1| DNA repair protein RecN [Vibrio cholerae RC27]
 gi|298499019|ref|ZP_07008826.1| DNA repair protein RecN [Vibrio cholerae MAK 757]
 gi|172044576|sp|P0C6Q4|RECN_VIBCH RecName: Full=DNA repair protein recN; AltName: Full=Recombination
           protein N
 gi|172047451|sp|A5F379|RECN_VIBC3 RecName: Full=DNA repair protein recN; AltName: Full=Recombination
           protein N
 gi|9655304|gb|AAF94014.1| DNA repair protein RecN [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121550048|gb|EAX60064.1| DNA repair protein RecN [Vibrio cholerae 2740-80]
 gi|126511386|gb|EAZ73980.1| DNA repair protein RecN [Vibrio cholerae NCTC 8457]
 gi|126520439|gb|EAZ77662.1| DNA repair protein RecN [Vibrio cholerae B33]
 gi|146315700|gb|ABQ20239.1| DNA repair protein RecN [Vibrio cholerae O395]
 gi|227008916|gb|ACP05128.1| DNA repair protein RecN [Vibrio cholerae M66-2]
 gi|227012672|gb|ACP08882.1| DNA repair protein RecN [Vibrio cholerae O395]
 gi|254843694|gb|EET22108.1| recombination and repair protein [Vibrio cholerae MO10]
 gi|255737683|gb|EET93077.1| DNA repair protein RecN [Vibrio cholera CIRS 101]
 gi|262022839|gb|EEY41545.1| DNA repair protein RecN [Vibrio cholerae RC27]
 gi|262028967|gb|EEY47620.1| DNA repair protein RecN [Vibrio cholerae INDRE 91/1]
 gi|297543352|gb|EFH79402.1| DNA repair protein RecN [Vibrio cholerae MAK 757]
          Length = 554

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +        +
Sbjct: 117 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHADLLKATRHAY-QNWRQASNQL 173

Query: 167 RG 168
           + 
Sbjct: 174 KQ 175


>gi|15601303|ref|NP_232934.1| hypothetical protein VCA0544 [Vibrio cholerae O1 biovar eltor
          str. N16961]
 gi|153823761|ref|ZP_01976428.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227812113|ref|YP_002812123.1| hypothetical protein VCM66_A0503 [Vibrio cholerae M66-2]
 gi|229506285|ref|ZP_04395794.1| ATP-dependent endonuclease [Vibrio cholerae BX 330286]
 gi|229509595|ref|ZP_04399077.1| ATP-dependent endonuclease [Vibrio cholerae B33]
 gi|229516583|ref|ZP_04406030.1| ATP-dependent endonuclease [Vibrio cholerae RC9]
 gi|229605835|ref|YP_002876539.1| ATP-dependent endonuclease [Vibrio cholerae MJ-1236]
 gi|254849705|ref|ZP_05239055.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|298499343|ref|ZP_07009149.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9657951|gb|AAF96446.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
          str. N16961]
 gi|126518719|gb|EAZ75942.1| conserved hypothetical protein [Vibrio cholerae B33]
 gi|227011255|gb|ACP07466.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|229346464|gb|EEO11435.1| ATP-dependent endonuclease [Vibrio cholerae RC9]
 gi|229353545|gb|EEO18483.1| ATP-dependent endonuclease [Vibrio cholerae B33]
 gi|229356636|gb|EEO21554.1| ATP-dependent endonuclease [Vibrio cholerae BX 330286]
 gi|229372321|gb|ACQ62743.1| ATP-dependent endonuclease [Vibrio cholerae MJ-1236]
 gi|254845410|gb|EET23824.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297541324|gb|EFH77375.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 554

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ + I+ FR    L L FD   T  +G+N  GK+++L+A+S + P  G
Sbjct: 12 MHLERIEIAGFRGIRRLSLTFDE-ITTLIGENTWGKSSLLDALSVVLPADG 61


>gi|332860068|ref|XP_001135642.2| PREDICTED: structural maintenance of chromosomes protein 1B
          isoform 1 [Pan troglodytes]
          Length = 1235

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
           ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3  HLELLLVENFKSWRGHQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQ 62

Query: 63 DVTR 66
          ++  
Sbjct: 63 ELIH 66


>gi|323492776|ref|ZP_08097919.1| ATP-dependent endonuclease [Vibrio brasiliensis LMG 20546]
 gi|323312972|gb|EGA66093.1| ATP-dependent endonuclease [Vibrio brasiliensis LMG 20546]
          Length = 162

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +K++ + IS FR    L + FD   T  +G+N  GK+++L+A+S 
Sbjct: 1  MKLERIEISGFRGIKRLSIAFDE-LTTLIGENTWGKSSLLDALSV 44


>gi|313682334|ref|YP_004060072.1| smc domain protein [Sulfuricurvum kujiense DSM 16994]
 gi|313155194|gb|ADR33872.1| SMC domain protein [Sulfuricurvum kujiense DSM 16994]
          Length = 785

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + ++ L +  F+ YA   + F++     +G NG GK+ I + + F   G
Sbjct: 1  MTLESLRLQNFKRYAEYEITFESGLCGILGRNGRGKSTIFDGVFFALYG 49


>gi|227517907|ref|ZP_03947956.1| DNA repair protein RecN [Enterococcus faecalis TX0104]
 gi|227074661|gb|EEI12624.1| DNA repair protein RecN [Enterococcus faecalis TX0104]
          Length = 557

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 94/262 (35%), Gaps = 32/262 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKQLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + +  +  ++ R   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLTVKEKYTRAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
              +L G  D   D+   ++ E
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE 254


>gi|254465073|ref|ZP_05078484.1| DNA repair protein RecN [Rhodobacterales bacterium Y4I]
 gi|206685981|gb|EDZ46463.1| DNA repair protein RecN [Rhodobacterales bacterium Y4I]
          Length = 549

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRALDIRDILIIDHLELNFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRV 112
            G+           G +  A  I  +       S+   ++N    R 
Sbjct: 57  QGARQGEVLAEFELGADHPAHAILEEAGLPGGDSLILRRVNTADGRK 103


>gi|114769591|ref|ZP_01447201.1| SMC protein [alpha proteobacterium HTCC2255]
 gi|114549296|gb|EAU52178.1| SMC protein [alpha proteobacterium HTCC2255]
          Length = 1151

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 92/278 (33%), Gaps = 31/278 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+ ++      +  R   
Sbjct: 1   MQFSKLRLTGFKSFVDPTELIIADGLTGVVGPNGCGKSNLLEALRWVMGENRPKAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             DV   G+ S     +      ++  + LA  S   +   +   R  +      +   +
Sbjct: 61  MEDVIFAGASSRPARNYAEVSLLIDNTQRLAPASFNTQDVLEIIRRITRDVGSAYKTNGK 120

Query: 116 LNKHLRISWL---------VPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            ++   +  L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DSRAKDVQMLFADASTGAHSPALVRQGQISELINAKPKARRRVLE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSSLIMEYVQK 218
             E  ++ R         +      ++AQ+  L    +      E+ N L       + +
Sbjct: 177 RHEAELKLRGSETNLNRVNDV-VEQLDAQLGSLARQARQAKRYREIGNELRHSEGLLLYR 235

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
                         +      F A  +  A +L   R+
Sbjct: 236 RWREADIARQKASEELADATKFAANAQTEASQLLRARE 273



 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  T++  S GEQ +  + +  A           API +LDE+ A LD+   N    +
Sbjct: 1043 GKKLSTLSLLSGGEQTLTALALIFAVFLA-----NPAPICVLDEVDAPLDDANVNRFCDM 1097

Query: 338  VTDIGSQI 345
            + D+ SQ 
Sbjct: 1098 LDDMTSQT 1105


>gi|120611844|ref|YP_971522.1| ATP-dependent endonuclease family protein [Acidovorax citrulli
          AAC00-1]
 gi|120590308|gb|ABM33748.1| ATP-dependent endonuclease family protein [Acidovorax citrulli
          AAC00-1]
          Length = 641

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +++  + I  FR      L       + +GDN  GKT +LEA+  
Sbjct: 1  MQVARIEIHNFRGIREATLDLVQHA-VLLGDNNTGKTTVLEAMDL 44


>gi|94986693|ref|YP_594626.1| DNA repair ATPase [Lawsonia intracellularis PHE/MN1-00]
 gi|94730942|emb|CAJ54305.1| ATPase involved in DNA repair [Lawsonia intracellularis PHE/MN1-00]
          Length = 527

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 10/116 (8%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +      + L F +   +  G+ G GK+ IL+AI+FL  G   R   
Sbjct: 2   MFEYLRIQNLALID-----DIELEFSSGMNVITGETGAGKSFILKAINFL-MGDKLRV-- 53

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
             D+ R G          V   +G   +  +L     RS   L         V EL
Sbjct: 54  --DMVRQGKERAQIEALFVHPEKGELILRRELSAATGRSRFYLNDKLTSQNTVKEL 107


>gi|71736032|ref|YP_274075.1| hypothetical protein PSPPH_1843 [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|71556585|gb|AAZ35796.1| conserved hypothetical protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
          Length = 505

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYAD 63
          + I+ + +  FR     R+   +  +IFVG N  GKT+   A+   +     R       
Sbjct: 1  MHIETVWVRNFRRLKDTRIDLASDISIFVGANNSGKTSAAHALQLFTSASKDRFTLHD-- 58

Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLET 94
               S  +    A  EG +G+   +I L+ 
Sbjct: 59 ---FSSECWDVINAFGEGADGVELPTISLDI 86


>gi|330908687|gb|EGH37201.1| putative ABC oligo/dipeptide transport, ATP-binding protein
           [Escherichia coli AA86]
          Length = 577

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 1   MTNRI-KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRR 58
           M N+I K+K +N+ +FR   ++ + F ++ T+  G NG  K+ IL  I+   S  + F +
Sbjct: 1   MANQITKLKNINVVKFRGLKNINIEFGSRLTVICGKNGTSKSTILGIIAQIFSFTKDFTK 60

Query: 59  ASYADVTRIGS------PSFFSTFARV-EGMEGLADISIKLETRDDRSVRCL 103
               D+T+  +       S FS   R+ E  +    + +K+   D  S + L
Sbjct: 61  NPETDLTQYKTLTNGSFKSAFSEHFRLSEQFDVPGSMDVKISVYDGASNKHL 112


>gi|325092373|gb|EGC45683.1| mitotic cohesin complex [Ajellomyces capsulatus H88]
          Length = 1260

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y     L+F DA     +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLIRLELFNFKSYKGHHTLLFGDAYFASIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 RDLVYRG 69


>gi|320157240|ref|YP_004189619.1| DNA repair protein RecN [Vibrio vulnificus MO6-24/O]
 gi|319932552|gb|ADV87416.1| DNA repair protein RecN [Vibrio vulnificus MO6-24/O]
          Length = 554

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 63/208 (30%), Gaps = 26/208 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L        R    IN   +    
Sbjct: 57  QGEDKTEVSAAFLLDNNLHATRWLEDNELLDGSECILRRIITSEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+    ++         +     +  ++
Sbjct: 117 LKALGQLLINIHGQHAHHQLMK--SEHQMAMLDQYAGHLNLLKNTRVAYQNWRQADNHLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGV 195
                  +             ++ EL +
Sbjct: 175 QLQENSLQNQAQKQLLEYQIKELNELAI 202


>gi|319411782|emb|CBQ73825.1| related to SMC5-Structural maintenance of chromosomes, required for
           cell viability [Sporisorium reilianum]
          Length = 1238

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 18/223 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I+ + +S F  Y S+         +  G NG GK++I  AI+  L        R +    
Sbjct: 160 IRRIALSNFLTYDSVEFRVGPYLNLICGPNGTGKSSIACAIALGLGGQPSLLGRASHLGS 219

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL------- 116
             + G    +     ++   G  +  ++       +     +N       D L       
Sbjct: 220 FVKRGETDGW-IEIELQASPGSPNPVVRRTLTTSSNKSDWYVNGRSTTKTDVLAMVSEYN 278

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRM---VFAIDPRHRRRMIDFERLMRGRNRLL 173
                +   +P           + +R ++       A   R   R+ +  +        L
Sbjct: 279 IDVANLCSFLPQDKVHEFAKMTDAKRLVETEKAVGGARLVRWHERLNEHGKAAAEIASQL 338

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSLIM 213
                + +        + ++ V+    R E+   I  L  +I 
Sbjct: 339 KAKQEEKAHLEQRNQAL-QVDVERFEERQEIEQRIERLEVMIA 380


>gi|262164215|ref|ZP_06031953.1| ATP-dependent endonuclease [Vibrio mimicus VM223]
 gi|262026595|gb|EEY45262.1| ATP-dependent endonuclease [Vibrio mimicus VM223]
          Length = 543

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ + I+ FR    L L FD   T  +G+N  GK+++L+A+S + P  G
Sbjct: 1  MHLERIEIAGFRGIRRLSLTFDE-ITTLIGENTWGKSSLLDALSVVLPADG 50


>gi|237740465|ref|ZP_04570946.1| DNA repair protein recN [Fusobacterium sp. 2_1_31]
 gi|229422482|gb|EEO37529.1| DNA repair protein recN [Fusobacterium sp. 2_1_31]
          Length = 558

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 83/279 (29%), Gaps = 29/279 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  +  ++ L I        L + F+    +  G+ G GK+ IL  I+ L   +     +
Sbjct: 1   MGRKFMLRELKIENLAIIDELDIEFEKGFIVLTGETGAGKSIILSGINLLIGEK-----A 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADIS-IKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             D+ R G  +  +        E    +  + ++T  D  +     N             
Sbjct: 56  SVDMIRDGEENLVAQGVFDIDEEQKKKLEAMGIDTDGDEIIIRRYYNRNGKARA-----F 110

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           +    +  +  +  +         L  +V     +      +  +L+   + L  E    
Sbjct: 111 VNNVRITLADLKEIAST-------LVDIVGQHSHQMLLNRNNHIKLLD--SFLSKEDKDI 161

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                ++ +Q  E+  KI     +    L        Q E    +KL          D  
Sbjct: 162 KEKLLTLLSQHREIKSKIEKIESDKKETLEKKEFYEYQLEEIEKLKLK---------DGE 212

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
              L+ EY K     +  + +        +  D  + + 
Sbjct: 213 DEILEAEYKKVFNAEKIREKVYESLEYLKYDDDSALGFI 251


>gi|197303925|ref|ZP_03168957.1| hypothetical protein RUMLAC_02662 [Ruminococcus lactaris ATCC
          29176]
 gi|197296893|gb|EDY31461.1| hypothetical protein RUMLAC_02662 [Ruminococcus lactaris ATCC
          29176]
          Length = 517

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI  + I  FR Y    ++  +   T+FVG N +GK+ ILEA+
Sbjct: 1  MKIDSIKIKNFRGYKDETKIELND-LTVFVGKNDIGKSTILEAL 43


>gi|159899697|ref|YP_001545944.1| SMC domain-containing protein [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892736|gb|ABX05816.1| SMC domain protein [Herpetosiphon aurantiacus ATCC 23779]
          Length = 1023

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 96/275 (34%), Gaps = 37/275 (13%)

Query: 8   KFLNISEFRNYAS--LRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + L +  F  Y      L F+  +     G+NG GK+ +L+AI++   G+  R +S  ++
Sbjct: 4   EKLRVRNFMCYRDDVPTLDFEGIRVACLSGENGAGKSALLDAITWALWGKA-RVSSDDEL 62

Query: 65  TRIGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             +G+             +++  +            LE + +       I+   IR   E
Sbjct: 63  IALGAQEMEVDLQFSVAKTSYRVLRRRSSAKRGQTILEIQVNDGDNWRAISGNSIRETQE 122

Query: 116 LNKH---LRISWLVPS-------MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
           +      +     + S        D        ER+R L  ++          +  +E+ 
Sbjct: 123 IIHSVLRMEYDTFINSAFLVQGKADEFTRKAPAERKRVLAEILG---------LDAYEQ- 172

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  R +     + D +    +E  ++     +   R   ++   +   + VQ+ +    +
Sbjct: 173 LEARAKEQVRYFSDRA--QGLEGTISSYREWV-NKRDFYLSQ-EAEAQQRVQQLSHEIER 228

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
            ++      +  ++    K E  ++L   R ++  
Sbjct: 229 ATVVFEQADQQRRALEHRKAERDRELSRSRDLERQ 263


>gi|91791170|ref|YP_552120.1| hypothetical protein Bpro_5366 [Polaromonas sp. JS666]
 gi|91701051|gb|ABE47222.1| conserved hypothetical protein [Polaromonas sp. JS666]
          Length = 892

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 6   KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           +++ L +  FR + +        +  +F G NG GKT++ E + +   G
Sbjct: 85  RLRHLTLGPFRGFRTPEPFDLQKRVILFYGPNGSGKTSLCEGLEYALLG 133


>gi|81300588|ref|YP_400796.1| DNA repair protein RecN [Synechococcus elongatus PCC 7942]
 gi|81169469|gb|ABB57809.1| DNA repair protein RecN [Synechococcus elongatus PCC 7942]
          Length = 581

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 94/308 (30%), Gaps = 52/308 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  F     L L       +  G+ G GK+ +L+AI  +  G+           R
Sbjct: 2   LQSLRIENFALIDQLELELGQGLHVLTGETGAGKSILLDAIDCVLGGKP-----GGRPIR 56

Query: 67  IGSPSFF--STFAR------------VEGMEGLADISIKLETRDDRSVRCLQINDVVI-- 110
            G       +TFA             +E +E     S +L    +      ++N V++  
Sbjct: 57  SGCDRALLEATFALSPDLATWLQEQAIEAIEDSLICSRELVQSSNGLRSRSRVNGVLVNR 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----------RMVFAIDPRHRRRM 159
           + + EL +HL    +      +  G + ++R +LD           + V      +R   
Sbjct: 117 QQLAELRRHL--VEITAQGQTVALGQTAQQRDWLDSFGGESLAKQRQGVALAYAAYREAA 174

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEM--INALSSLI 212
              E   +     L +   D      +    AEL       +++  R  +  +  L    
Sbjct: 175 QTLETRRQSDRDRLRQQDLDRFQLEELTQ--AELSDPEELTQLSQERDRLAHVAELQQQS 232

Query: 213 MEYVQKENFPHIKLSLTGFLDGK---------FDQSFCALKEEYAKKLFDGRKMDSMSRR 263
               Q  +      S    L            FD S     +   + +   +++     R
Sbjct: 233 YRVYQALDQSEEAGSACDRLGEAEQGLTQMVVFDPSLQPWLQLLQEAIAQVQEVSRQLYR 292

Query: 264 TLIGPHRS 271
              G    
Sbjct: 293 YGEGLESD 300


>gi|56752323|ref|YP_173024.1| DNA replication and repair protein RecN [Synechococcus elongatus
           PCC 6301]
 gi|56687282|dbj|BAD80504.1| DNA replication and repair protein RecN [Synechococcus elongatus
           PCC 6301]
          Length = 588

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 94/308 (30%), Gaps = 52/308 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  F     L L       +  G+ G GK+ +L+AI  +  G+           R
Sbjct: 9   LQSLRIENFALIDQLELELGQGLHVLTGETGAGKSILLDAIDCVLGGKP-----GGRPIR 63

Query: 67  IGSPSFF--STFAR------------VEGMEGLADISIKLETRDDRSVRCLQINDVVI-- 110
            G       +TFA             +E +E     S +L    +      ++N V++  
Sbjct: 64  SGCDRALLEATFALSPDLATWLQEQAIEAIEDSLICSRELVQSSNGLRSRSRVNGVLVNR 123

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----------RMVFAIDPRHRRRM 159
           + + EL +HL    +      +  G + ++R +LD           + V      +R   
Sbjct: 124 QQLAELRRHL--VEITAQGQTVALGQTAQQRDWLDSFGGESLAKQRQGVALAYAAYREAA 181

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEM--INALSSLI 212
              E   +     L +   D      +    AEL       +++  R  +  +  L    
Sbjct: 182 QTLETRRQSDRDRLRQQDLDRFQLEELTQ--AELSDPEELTQLSQERDRLAHVAELQQQS 239

Query: 213 MEYVQKENFPHIKLSLTGFLDGK---------FDQSFCALKEEYAKKLFDGRKMDSMSRR 263
               Q  +      S    L            FD S     +   + +   +++     R
Sbjct: 240 YRVYQALDQSEEAGSACDRLGEAEQGLTQMVVFDPSLQPWLQLLQEAIAQVQEVSRQLYR 299

Query: 264 TLIGPHRS 271
              G    
Sbjct: 300 YGEGLESD 307


>gi|25010616|ref|NP_735011.1| DNA repair protein RecN [Streptococcus agalactiae NEM316]
 gi|76788066|ref|YP_329234.1| DNA repair protein RecN [Streptococcus agalactiae A909]
 gi|77412382|ref|ZP_00788692.1| DNA repair protein RecN [Streptococcus agalactiae CJB111]
 gi|77414001|ref|ZP_00790173.1| DNA repair protein RecN [Streptococcus agalactiae 515]
 gi|23094970|emb|CAD46191.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563123|gb|ABA45707.1| DNA repair protein RecN [Streptococcus agalactiae A909]
 gi|77159927|gb|EAO71066.1| DNA repair protein RecN [Streptococcus agalactiae 515]
 gi|77161570|gb|EAO72571.1| DNA repair protein RecN [Streptococcus agalactiae CJB111]
          Length = 552

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 95/278 (34%), Gaps = 37/278 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIEEISLNFETGMTVLTGETGAGKSIIIDAMNMMLGSR-----ASVEVIR 56

Query: 67  IGS-----PSFFST--------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
            G+       FFS              G+E   ++ I+ E          +IN  ++   
Sbjct: 57  HGANKAEIEGFFSVEKNQSLVQLLEENGIELADELIIRREIFQ-NGRSVSRINGQMVNLS 115

Query: 112 --------VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                   +VD   +H +   + P+M  +          F +     I  R++     + 
Sbjct: 116 TLKAVGHYLVDIHGQHDQEELMKPNMHILMLD------EFGNTEFNVIKERYQSLFDAYR 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE--MINALSSLIMEYVQKENF 221
           +L +           + S    +E Q+AE+      +  +  ++     L+      +  
Sbjct: 170 QLRKRVLDKQKNEQENKSRIEMLEFQIAEIESVALKSDEDQTLLKQRDKLMNHKNIADTL 229

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            +  L L             A+ +  A + FD    D 
Sbjct: 230 TNAYLMLDNEEFSSLSNVRSAMNDLMALEEFDREYKDL 267


>gi|329117850|ref|ZP_08246567.1| RecF/RecN/SMC N-terminal domain protein [Streptococcus parauberis
           NCFD 2020]
 gi|326908255|gb|EGE55169.1| RecF/RecN/SMC N-terminal domain protein [Streptococcus parauberis
           NCFD 2020]
          Length = 850

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 54/142 (38%), Gaps = 15/142 (10%)

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L+  I    QK      KL  + ++  K+ ++F    ++  KKL      +   R    G
Sbjct: 542 LAKEIRLSTQKITTFQNKL-FSEYITSKYIETF----DDECKKLDANFSAEIKQR----G 592

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
              + L          I   S GEQ+ + +  FLA  RL          L+ D+  + LD
Sbjct: 593 HKGATLSKLSIKGKSPIEILSEGEQRSIALANFLAETRL----NKNNSCLVFDDPVSSLD 648

Query: 328 EDKRNALFRIVTDIGS--QIFM 347
             +R  +   + +  S  Q+ +
Sbjct: 649 HVRRERIAERLVEEASHKQVVI 670


>gi|258544839|ref|ZP_05705073.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
 gi|258519944|gb|EEV88803.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
          Length = 1128

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 92/270 (34%), Gaps = 43/270 (15%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +  + ++ F+++A       DA  T  +G NG GK+NI++A+ ++   +  +  R  +
Sbjct: 1   MHLTAIRLAGFKSFADNTTFPVDAPLTGIIGPNGCGKSNIIDAVRWVLGETAAKQLRGQA 60

Query: 61  YADVT-----RIGSPSFFSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV           +  S     +  +G         A++ I  + + D       IN 
Sbjct: 61  MTDVIFAGAANRRGAAQASVALHFDNSDGKAGGAFADYAELVIARKVQSDGQS-QYSING 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSME------RRRF 143
             +R  D                  E     RI    P   R+F   +        RR+ 
Sbjct: 120 KRVRRRDIVELLQGTGVGARSYAVIEQGMISRIIEAKPEELRVFIEEAAGIALYKTRRKE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
            +  +  +     R      +L + R++L  E     +W  +++AQ      ++   +  
Sbjct: 180 SEARMNEVRDHLTRHDDRLHQLGKQRDKLAQEAETAKTW-RALQAQAQTASHQLQSWQYH 238

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            ++       E   ++      L     +D
Sbjct: 239 QLHRQHEAAQEQYSRDRAALNDLFAHSGID 268



 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
            S GE+ +  + +  A  RL       AP  LLDE+ A LD+     L  ++ ++  Q
Sbjct: 1038 SGGEKALTALALVFALFRL-----NPAPFCLLDEVDAPLDDANVGRLSALLREMAGQ 1089


>gi|238926863|ref|ZP_04658623.1| DNA repair protein RecN [Selenomonas flueggei ATCC 43531]
 gi|238885395|gb|EEQ49033.1| DNA repair protein RecN [Selenomonas flueggei ATCC 43531]
          Length = 568

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 54/387 (13%), Positives = 108/387 (27%), Gaps = 63/387 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I  F     + + F     I  G+ G GK +IL  I  L    G R    ADV
Sbjct: 1   MVLHSLRIQNFALLEEVTVEFGTGLNILTGETGAGK-SIL--IGALGAILGQRVP--ADV 55

Query: 65  TRIGS-----------PSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            R G                +  A +   E   D  + +  +  R+ +  + +N   + +
Sbjct: 56  IRSGCDFLRVEAVFSIEENSAVSALLAAQEIECDDELIIVRKVSRAGKSSILVNGAHVTL 115

Query: 113 --VDELNKHLRISWLVPSMDRIFSGLSMERRRFL---DRMVFAIDPRHRRRMIDFERLMR 167
             + +L  HL           +    +   R  L   D  +      ++    D++   +
Sbjct: 116 TFLKKLAPHLVDIHGQNENLALLREEAQ--RSLLEGGDADLAERLGAYQDIYRDWKARTK 173

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVK-----------INIARVEMINALSSLIMEYV 216
            R     E    +     +  Q  E+                I R+     L     E  
Sbjct: 174 ERETRTEENAKIAERLDMLRWQEQEIAEAELTEGEDEELETEIRRLSHAERLMEHAAEAS 233

Query: 217 QKENFPHIK----------LSLTGFLDGKFDQSFCA----LKEEYAKKLFDGRK-MDSMS 261
              +    +          ++       ++D+S       ++E Y        +  D + 
Sbjct: 234 NLLSEDTEEGAAVLTALSRVTYALEEIARYDESLAGAQAMIEEAYISLQEASYEVRDYLE 293

Query: 262 RRTLIGPHRSDLIVDYC-DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
                      + +     + +   +G         +   LA    +      A    +D
Sbjct: 294 GIDADPASLDKIQLRMDVIERLKKKYG-------GSISAVLARLESLRTEISSAERYDMD 346

Query: 321 EISAHLD---EDKRNALFRIVTDIGSQ 344
                LD      R  + +   ++  Q
Sbjct: 347 --IEELDAVIARLRQRMEQCAAELTKQ 371


>gi|119893373|ref|XP_600396.3| PREDICTED: structural maintenance of chromosomes 1B, partial [Bos
          taurus]
          Length = 637

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
          +++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3  RLEVLFVENFKSWRGRQVIGPFKRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQ 62

Query: 63 DVTR 66
          ++  
Sbjct: 63 ELIH 66


>gi|159044954|ref|YP_001533748.1| DNA repair protein [Dinoroseobacter shibae DFL 12]
 gi|157912714|gb|ABV94147.1| DNA repair protein [Dinoroseobacter shibae DFL 12]
          Length = 553

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 48/159 (30%), Gaps = 22/159 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F A   +  G+ G GK+ +L+A+ F+   RG      AD+ R
Sbjct: 2   LARLDIRDILIIDHLVLDFRAGLNVLTGETGAGKSILLDALGFVLGWRG-----RADLVR 56

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
            G+     T               R  G        I          +   +ND      
Sbjct: 57  QGAAQGEVTAVFDLAPDHPAFAVLRAAGFPDPEGELILRRVNTGEGRKSAYVNDRACSGT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           V+  L+  L           +        R  LD     
Sbjct: 117 VLRALSDVLVELHGQQDDRGLL--DPKGHRALLDDFGGH 153


>gi|91778862|ref|YP_554070.1| putative GTP-binding protein [Burkholderia xenovorans LB400]
 gi|91691522|gb|ABE34720.1| putative GTP-binding protein [Burkholderia xenovorans LB400]
          Length = 874

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 4/195 (2%)

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL-TGFLD 233
           E        + + +Q+  +G      R+  + A          + +     LSL    L 
Sbjct: 675 EQNERQVRIAGLRSQLETVGASGLGERLAALEARVEQATRRKDELSLRASALSLLDEVLV 734

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            + D +   L+    ++L    K         +G   S   +D   +A T+   S G ++
Sbjct: 735 DERDAAVAQLRAPLTERLGHYLKRIFPQSTIALGDDLSPATLDRYGRADTLDALSFGTRE 794

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGTD 351
            + +   LA+A L+   +G   +L+LD+ + H D  +R+A+ R +       QI +    
Sbjct: 795 QLGILTRLAYADLLK-ASGRPTLLMLDDAAVHTDAARRDAIKRALIDAATRHQILVFTCH 853

Query: 352 KSVFDSLNETAKFMR 366
             ++D L    + + 
Sbjct: 854 PELWDDLGVRQRAIE 868



 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +K++ + I EF+ +    +         +FVG N  GK+ I EA+  +   R ++ +   
Sbjct: 1  MKLQSIAIQEFKQFTGRLVIDDLQPGLNLFVGPNEAGKSTIAEAVRAVFLER-YKASHLK 59

Query: 63 DVTRIGSPSF 72
          D+   G  S 
Sbjct: 60 DLLPWGKASG 69


>gi|312883362|ref|ZP_07743088.1| ATP-dependent endonuclease [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368978|gb|EFP96504.1| ATP-dependent endonuclease [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 543

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +K++ + IS FR    L + FD   T  +G+N  GK+++L+A+S 
Sbjct: 1  MKLERIEISGFRGIKRLSIAFDE-LTTLIGENTWGKSSLLDALSV 44


>gi|269964231|ref|ZP_06178519.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831035|gb|EEZ85206.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 380

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + ++ + +  F+++ ++ L       I  G N VGK++I++A+
Sbjct: 1  MALRKIRLENFKSFENVELPLS-NLNILAGGNSVGKSSIIQAL 42


>gi|262173725|ref|ZP_06041402.1| ATP-dependent endonuclease [Vibrio mimicus MB-451]
 gi|261891083|gb|EEY37070.1| ATP-dependent endonuclease [Vibrio mimicus MB-451]
          Length = 543

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ + I+ FR    L L FD   T  +G+N  GK+++L+A+S + P  G
Sbjct: 1  MHLERIEIAGFRGIRRLSLTFDE-ITTLIGENTWGKSSLLDALSVVLPADG 50


>gi|241782309|ref|XP_002400604.1| paramyosin, putative [Ixodes scapularis]
 gi|215508579|gb|EEC18033.1| paramyosin, putative [Ixodes scapularis]
          Length = 1024

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYAD 63
           I+ + +  F  +  L   F       +G NG GK+ IL ++     G+     R  S  +
Sbjct: 41  IESVQLRNFMCHTKLDFSFSDHTNFIIGRNGSGKSAILTSLIIGLGGKANTASRGTSVKN 100

Query: 64  VTRIGSPSF-FSTFARVEGME 83
           +   G  +   +   R  G +
Sbjct: 101 LVETGKRAAEVTIRLRNHGRD 121


>gi|300814427|ref|ZP_07094695.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
          str. F0141]
 gi|300511461|gb|EFK38693.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
          str. F0141]
          Length = 403

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          I  +++  F+++ +  L FD    + +G++  GKT IL AI
Sbjct: 4  ITKVHLENFQSHKNTSLEFDRGLNVILGNSDSGKTAILRAI 44


>gi|289626457|ref|ZP_06459411.1| hypothetical protein PsyrpaN_15172 [Pseudomonas syringae pv.
          aesculi str. NCPPB3681]
 gi|330866383|gb|EGH01092.1| hypothetical protein PSYAE_03805 [Pseudomonas syringae pv.
          aesculi str. 0893_23]
          Length = 778

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYAD 63
          + I+ + +  FR     R+   +  +IFVG N  GKT+   A+   +     R       
Sbjct: 1  MHIETVWVRNFRRLKDTRIDLASDISIFVGANNSGKTSAAHALQLFTSASKDRFTLHD-- 58

Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLET 94
               S  +    A  EG +G+   +I L+ 
Sbjct: 59 ---FSSECWDVINAFGEGADGVELPTISLDI 86


>gi|260888432|ref|ZP_05899695.1| putative RecF/RecN/SMC N domain protein [Selenomonas sputigena
          ATCC 35185]
 gi|260861968|gb|EEX76468.1| putative RecF/RecN/SMC N domain protein [Selenomonas sputigena
          ATCC 35185]
          Length = 367

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          N+ ++  L +  F++     + F     + +G NG GKTN++   S L
Sbjct: 8  NQFQLTRLKVLGFKSIQETEIEFG-MLNVLIGSNGSGKTNLISLFSLL 54


>gi|222622120|gb|EEE56252.1| hypothetical protein OsJ_05274 [Oryza sativa Japonica Group]
          Length = 1061

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 5  IKIKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRAS 60
          + IK + +  F++Y    +    F  +  + VG NG GK+N   AI   LS      R+ 
Sbjct: 1  MYIKKVVVEGFKSYRE-EISTEPFSPKVNVVVGANGSGKSNFFHAIRFVLSDMFQNLRSE 59

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
                          A VE +   +D  I L+  D
Sbjct: 60 DRGALLHEGADISVLSAFVEIVFDNSDNRIPLKKED 95


>gi|157148128|ref|YP_001455447.1| recombination and repair protein [Citrobacter koseri ATCC BAA-895]
 gi|157085333|gb|ABV15011.1| hypothetical protein CKO_03938 [Citrobacter koseri ATCC BAA-895]
 gi|190341493|gb|ACE74823.1| RecN [Citrobacter koseri]
          Length = 553

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 90/251 (35%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----ADADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           +G+      + F+  +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  VGATRADLCARFSLKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKSEHQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
               +   L ++   +R ++ +     +  + Q+      ++ L  +   + ++      
Sbjct: 148 GYANE--ALLIQEMSSRYQLWHQSCRDLAHHQQQSQERAARMELLQYQLKELNEFNPQPG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|56694881|ref|YP_164391.1| hypothetical protein BCBBV1cgp13 [Bacillus phage BCJA1c]
 gi|52631308|gb|AAU85060.1| 13 [Bacillus phage BCJA1c]
          Length = 434

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 6  KIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          KI  L I   +   ++++       T+  G NG GKT+ L+AI++   G  +R +
Sbjct: 3  KINKLEIENIKRVKAVKIEPSPNGLTVIGGGNGQGKTSTLDAIAWALGGNKYRPS 57


>gi|87301336|ref|ZP_01084177.1| Chromosome segregation protein SMC [Synechococcus sp. WH 5701]
 gi|87284304|gb|EAQ76257.1| Chromosome segregation protein SMC [Synechococcus sp. WH 5701]
          Length = 1205

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  + +++F+++  ++ +  +   T+  G NG GK+NIL+A+ F   L+  RG R   
Sbjct: 2  VYINQVELAQFKSFGGAMAIRLEPSFTVITGPNGSGKSNILDAVLFCLGLASSRGMRAER 61

Query: 61 YADVT-----RIGSPSFFSTFARVEGMEGLAD 87
            D+      R G  +      R +  +   D
Sbjct: 62 LPDLINSATVRQGKAAETVVSVRFDLSDWEPD 93


>gi|300779520|ref|ZP_07089378.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
 gi|300505030|gb|EFK36170.1| conserved hypothetical protein [Chryseobacterium gleum ATCC
          35910]
          Length = 376

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I  L +  F+ + +          IF G NG+GK++I+++I  L
Sbjct: 2  ITKLELKNFKAHENAFFDL-KGLNIFTGRNGMGKSSIIQSILLL 44


>gi|209963842|ref|YP_002296757.1| SMC family protein [Rhodospirillum centenum SW]
 gi|209957308|gb|ACI97944.1| SMC family protein [Rhodospirillum centenum SW]
          Length = 1175

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 24/166 (14%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++   L IS F+++     L  +   T  VG NG GK+N++EA+ ++   +  +  R A 
Sbjct: 1   MQFTRLRISGFKSFVDATELQIEPGMTGIVGPNGCGKSNLVEALRWVMGETSAKKMRGAD 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++     A         +++  + +R S    +IN  
Sbjct: 61  MDDVIFGGTATRPARNICEVTLSLDNAGRTAPAQFNDWPELEVTRKLERASGSDYRINGK 120

Query: 109 VIRVVDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDR 146
            +R  D            +         +  + +    +RR+ L+ 
Sbjct: 121 GVRARDVHILFADNASGANSPALVSQGRVGALINARPTDRRQLLED 166


>gi|56696100|ref|YP_166454.1| DNA repair protein RecN [Ruegeria pomeroyi DSS-3]
 gi|56677837|gb|AAV94503.1| DNA repair protein RecN [Ruegeria pomeroyi DSS-3]
          Length = 549

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2  LRALEIRDMLIIDRLELNFRPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67 IGSPSFFS 74
           G+     
Sbjct: 57 QGAEQGEV 64


>gi|327461349|gb|EGF07680.1| ATPase [Streptococcus sanguinis SK1]
          Length = 724

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 69/201 (34%), Gaps = 29/201 (14%)

Query: 168 GRNRLLTEGYFDSSWCS---SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            R   L +            S+ +Q  EL         E I   + L  E   +++   I
Sbjct: 378 QRIESLKKYNQQLIILEEKESLSSQFIELS--------EFIKKKNRLFQE---RKSVSEI 426

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD-------SMSRRTLIGPHRSDLIVDY 277
            +S   FL  K   +   L +   K      K+         +      G  +++L++  
Sbjct: 427 NISKLSFLSKKAHTAL--LTDNLLKTFKQNLKLLGLNNLSIELQGSNSKGKQQTELVLG- 483

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
            +K I     S GEQK   + +F++   L    +     ++ D+    LD    N    +
Sbjct: 484 ANKNIEDIL-SEGEQKATALALFISEISL----SNNKSAIIFDDPVNSLDHRIMNNFSEL 538

Query: 338 VTDIGSQIFMTGTDKSVFDSL 358
           +  + +QI +   +K   D  
Sbjct: 539 LMSLENQIIIFTHNKMFLDGF 559


>gi|294795000|ref|ZP_06760135.1| conserved hypothetical protein [Veillonella sp. 3_1_44]
 gi|294454362|gb|EFG22736.1| conserved hypothetical protein [Veillonella sp. 3_1_44]
          Length = 635

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K+  L +  F+   S  +  +    +  GDN  GKT + +++ +L  G+
Sbjct: 1  MKLTKLELLNFKGLKSFAINLN-GDVVIRGDNATGKTTVFDSVCWLLFGK 49


>gi|190341495|gb|ACE74824.1| RecN [Citrobacter koseri]
          Length = 553

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 90/251 (35%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----ADADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
           +G+      + F+  +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  VGATRADLCARFSLKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKSEHQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
               +   L ++   +R ++ +     +  + Q+      ++ L  +   + ++      
Sbjct: 148 GYANE--ALLIQEMSSRYQLWHQSCRDLAHHQQQSQERAARMELLQYQLKELNEFNPQPG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|167395675|ref|XP_001741701.1| DNA double-strand break repair Rad50 ATPase [Entamoeba dispar
          SAW760]
 gi|165893697|gb|EDR21837.1| DNA double-strand break repair Rad50 ATPase, putative [Entamoeba
          dispar SAW760]
          Length = 1135

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
          + I+ + I  F++YA       FD++     G NG GK+NIL+AI F+   +     R  
Sbjct: 1  MFIEEVLIDGFKSYARKTTIGKFDSKFNAITGLNGSGKSNILDAICFVMGIQNLSLVRVQ 60

Query: 60 SYADVT 65
          +  ++ 
Sbjct: 61 TLQELI 66


>gi|77361976|ref|YP_341550.1| exonuclease sbcCD subunit C [Pseudoalteromonas haloplanktis TAC125]
 gi|76876887|emb|CAI89104.1| exonuclease sbcCD subunit C [Pseudoalteromonas haloplanktis TAC125]
          Length = 1217

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 68/238 (28%), Gaps = 21/238 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           +KI  + I    +     + F      DA      GD G GK+ IL+AI      +  R 
Sbjct: 1   MKITAVRIHNLASIVDAEIDFLAAPLKDAGLFAITGDTGAGKSTILDAICLALYAKTARL 60

Query: 59  ASYA-DVTRIGSPSFFSTFARVEGMEGLADI--SIKLETRDDRSVRCLQ-INDVVIRVVD 114
                +       S     AR     G ++    +    +D  S R    +N    +   
Sbjct: 61  GGDRGNKVEFQGDSIRLNDARNLLRRGTSNGYAEVDFVGQDKESYRACWSVNRSRGKSDG 120

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRF---LDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            L        L+P    I S  S   ++    +                +F   ++    
Sbjct: 121 NLQAAQHTLHLLPDDTLISSDKSKTVKQIEAKIGLTFDQFSRAVLLAQHEFAAFLKA--- 177

Query: 172 LLTEGYFDSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
               G   +     +    + + +GV+I     E+      L             +L+
Sbjct: 178 ---TGDERAQLLECLTGTDKFSRIGVRIFERNKELKEKFELLQASLASYTLLSEDELA 232


>gi|282881996|ref|ZP_06290637.1| putative DNA repair exo subunit 2 [Peptoniphilus lacrimalis
          315-B]
 gi|281298026|gb|EFA90481.1| putative DNA repair exo subunit 2 [Peptoniphilus lacrimalis
          315-B]
          Length = 482

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          I  +++  F+++ +  L FD    + +G++  GKT IL AI
Sbjct: 4  ITKVHLENFQSHKNTSLEFDRGLNVILGNSDSGKTAILRAI 44


>gi|256843685|ref|ZP_05549173.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
 gi|256615105|gb|EEU20306.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
          Length = 831

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 245 EEYAKKLFDGRK-MDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           E + K L   ++ +  ++    +G +      +V    K   + + S G  + +   + L
Sbjct: 701 ERFPKMLKAAQEYLALLTGGRYVGINLDKKLTVVRSDGKKREVKYLSRGTAEQLYFALKL 760

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
           A    I +       +L+D+   + D+ + + + +++  I   +Q+ +    K++ D L 
Sbjct: 761 AFIEQIKDQINLP--ILIDDSFVNFDDQRVSYIDQLLQKISENNQVLIFTAQKNLVDQLG 818



 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +++K + I  F  +++        Q  +F G N  GK+  +  I  +  G   R  S   
Sbjct: 1   MRLKQIKIINFGQFSNKTFDLPSDQINVFFGANEAGKSTTVAFIKQILFGFHLRSNSSPF 60

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  +        F   +G   L  +  K   +  + +  ++ +  V+      +
Sbjct: 61  FEDYTPLAHVSPMGGNLVFTAADGEYELERLYAK-GDKTKKGILTVKKDGQVVPESVFFD 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           +   I     +   IF+   + +   L +    ++  +     D  +L+  R+    E 
Sbjct: 120 QIQNIDGSFYADSFIFNQEMLGQVNSLSQEDL-LERIYYLGAADSSKLLEMRDDFAKEA 177


>gi|153828288|ref|ZP_01980955.1| DNA repair protein RecN [Vibrio cholerae 623-39]
 gi|148876242|gb|EDL74377.1| DNA repair protein RecN [Vibrio cholerae 623-39]
          Length = 554

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 28/182 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------PRHRRRMIDFERLM 166
           +  L + L       +  ++       +   LD+     D        + +        +
Sbjct: 117 LKTLGQLLINVHGQHAHQQLMK--PEYQLSMLDQYAGHADLLKATRHAY-QNWRQASNQL 173

Query: 167 RG 168
           + 
Sbjct: 174 KQ 175


>gi|227903364|ref|ZP_04021169.1| conserved hypothetical protein [Lactobacillus acidophilus ATCC
          4796]
 gi|227868840|gb|EEJ76261.1| conserved hypothetical protein [Lactobacillus acidophilus ATCC
          4796]
          Length = 156

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 11/75 (14%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAIS---------FLSPGR 54
          + IK LNI ++R +     +      T   G NGVGK+ IL AI          + + G 
Sbjct: 1  MWIKDLNIKDYRAFQKETNIELSKHLTAIAGMNGVGKSTIL-AILTNVGELPKKYKTIGG 59

Query: 55 GFRRASYADVTRIGS 69
             R  ++DV    +
Sbjct: 60 SLFRGEFSDVIMYDA 74


>gi|295693417|ref|YP_003602027.1| DNA repair atpase [Lactobacillus crispatus ST1]
 gi|295031523|emb|CBL51002.1| DNA repair ATPase [Lactobacillus crispatus ST1]
          Length = 831

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 7/120 (5%)

Query: 245 EEYAKKLFDGRK-MDSMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           E + K L   ++ +  ++    +G +      +V    K   + + S G  + +   + L
Sbjct: 701 ERFPKMLKAAQEYLALLTGGRYVGINLDKKLTVVRSDGKKREVKYLSRGTAEQLYFALKL 760

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
           A    I +       +L+D+   + D+ + + + +++  I   +QI +    K++ D L 
Sbjct: 761 AFIEQIKDEINLP--ILIDDSFVNFDDQRVSYIDQLLQKISENNQILIFTAQKNLVDQLG 818



 Score = 38.0 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +++K + I  F  +++        Q  +F G N  GK+  +  I  +  G   R  S   
Sbjct: 1   MRLKQIKIINFGQFSNKTFDLPSDQINVFFGANEAGKSTTVAFIKQILFGFHLRSNSSPF 60

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  +        F   +G   L  +  K   +  + +  ++ +  V+      +
Sbjct: 61  FEDYTPLAHVSPMGGNLVFTAADGEYELERLYAK-GDKTKKGILTVKKDGQVVPESVFFD 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           +   I     +   IF+   + +   L +    ++  +     D  +L+  R+    E 
Sbjct: 120 QIQNIDGSFYADSFIFNQEMLGQVNSLSQEDL-LERIYYLGAADSSKLLEMRDDFAKEA 177


>gi|167586224|ref|ZP_02378612.1| DNA repair protein RecN [Burkholderia ubonensis Bu]
          Length = 549

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 91/259 (35%), Gaps = 30/259 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGS---------PSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++     A+ ++ L    D + R    IN     +  + 
Sbjct: 57  TGCGRADITAEFTQHDRVARWLDEHAFDAEDTVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           E+ + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 EVGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAD--AANVARAWRVWRDATQAID 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+  + +  H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQPGEW-DEVSNEHKRLSHSANLID 223

Query: 235 KFDQSFCALKEEYAKKLFD 253
               +  AL E     L  
Sbjct: 224 GVQGALNALSEADDAMLAQ 242


>gi|88855505|ref|ZP_01130169.1| predicted ATP-dependent endonuclease, OLD family protein [marine
          actinobacterium PHSC20C1]
 gi|88815412|gb|EAR25270.1| predicted ATP-dependent endonuclease, OLD family protein [marine
          actinobacterium PHSC20C1]
          Length = 668

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K+  + +  +R+   + L     +T  VG NG GK+++L A+ +   G
Sbjct: 1  MKVSHIVVENYRSLRRVELSVTD-YTALVGANGSGKSSVLYALQWFYEG 48


>gi|330838255|ref|YP_004412835.1| SMC domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746019|gb|AEB99375.1| SMC domain protein [Selenomonas sputigena ATCC 35185]
          Length = 361

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          N+ ++  L +  F++     + F     + +G NG GKTN++   S L
Sbjct: 2  NQFQLTRLKVLGFKSIQETEIEFG-MLNVLIGSNGSGKTNLISLFSLL 48


>gi|297170705|gb|ADI21728.1| ATPase involved in DNA repair [uncultured actinobacterium
           HF0130_15N16]
          Length = 531

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 15/246 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++       S   +     +   G+ G GKT +++AI  L+ GR     +   + R
Sbjct: 2   LLELSVQNLGVIESSSFILSPGVSALTGETGAGKTMVVQAIELLTGGR-----ADGSMVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH-LRISWL 125
            G+        R E  EG     I L+       R     D  +    +L++  L +  L
Sbjct: 57  RGADQAL-VEGRFETPEGA---EIILKRVIPSKGRSRAYVDGSLAGASQLSEIGLSLVDL 112

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
                         +R  LD               +  RL      +  +    +     
Sbjct: 113 HGQHQHQSLLNPKTQRSALDVFAKIDLRALISARSECRRLQAEIEEMGGDAKARAREVDL 172

Query: 186 IEAQMAELGVKINIARVEM-----INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
           ++ Q+ E+      +  E+     +  L +   E ++       ++S  G L  +  ++ 
Sbjct: 173 LKFQIDEIAALSIQSPDELNALEKLEELLTNAEERIEAGGHTRERISGDGGLLDQIGETI 232

Query: 241 CALKEE 246
             L +E
Sbjct: 233 QRLGDE 238


>gi|261212317|ref|ZP_05926602.1| ATP-dependent endonuclease [Vibrio sp. RC341]
 gi|260838248|gb|EEX64904.1| ATP-dependent endonuclease [Vibrio sp. RC341]
          Length = 543

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ + I+ FR    L L FD   T  +G+N  GK+++L+A+S + P  G
Sbjct: 1  MHLERIEIAGFRGIRRLSLTFDE-ITTLIGENTWGKSSLLDALSVVLPADG 50


>gi|156100779|ref|XP_001616083.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148804957|gb|EDL46356.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1785

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 81/223 (36%), Gaps = 51/223 (22%)

Query: 7   IKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---------GR 54
           ++ + I   R+Y    +  L F +  T+  G+NG GK+ I+E +              G+
Sbjct: 4   LEKIGIQGIRSYGDEEAQELEFASPITVIYGNNGSGKSTIIECLKMSCTGDFPPNADKGK 63

Query: 55  GFRRASYADVT--------------------RIGSPSFFSTFA------RVEGMEGLADI 88
            F    +  +                     RIG    F+ F       +++      D 
Sbjct: 64  SF---IHDPLISNKMNIRGKINLLLKNYNDKRIGISRSFTLFYSKDKNKKIKHTFRALDN 120

Query: 89  SIKLETRDDR-----SVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI--FSGLSMERR 141
           SI ++  + +     + +CL IN+ + +++      L    L    + +  FS     ++
Sbjct: 121 SIIIKKEEGQEDVIITNKCLDINEHIPKLMGVSKALLENVILCHHEESLWPFSESLKIKK 180

Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +F    +F  D    + + +F +  +  N +L    ++ +   
Sbjct: 181 KF--DELFGDDH-FSKILDEFTKCRKTMNDVLKRKEYELATLR 220


>gi|118580001|ref|YP_901251.1| DNA repair protein RecN [Pelobacter propionicus DSM 2379]
 gi|118502711|gb|ABK99193.1| DNA replication and repair protein RecN [Pelobacter propionicus DSM
           2379]
          Length = 556

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 31/166 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+      SL L      TI  G+ G GK+ I++A+  +  GR     + AD+ R
Sbjct: 2   LTDLSITNIAIIDSLHLSLKPGLTILTGETGAGKSIIIDAVGLIMGGR-----ASADLIR 56

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQIN------- 106
            GS                        G    A++ +K         R            
Sbjct: 57  SGSDEAVVEAIFDISDMSELSQLLSDSGFPCEAELLVKRSISRAGKNRIFINGAMATLTL 116

Query: 107 --DVVIRVVDELNKHLRISWLVPS----MDRIFSGLSMERRRFLDR 146
             D+  R+++   +H   + L P     +  +F+G +  R  F   
Sbjct: 117 LSDISRRLINIYGQHESQTLLRPENQLLLLDLFAGNTDLRGAFASL 162


>gi|126436524|ref|YP_001072215.1| hypothetical protein Mjls_3949 [Mycobacterium sp. JLS]
 gi|126236324|gb|ABN99724.1| conserved hypothetical protein [Mycobacterium sp. JLS]
          Length = 877

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K+  L ++ +R  +   + F D    +  G N +GK++++EA+  L   +
Sbjct: 1  MKLHRLVLTNYRGISRREIEFPDRGVVVISGANEIGKSSMIEALDLLFAAK 51


>gi|108800898|ref|YP_641095.1| hypothetical protein Mmcs_3934 [Mycobacterium sp. MCS]
 gi|119870038|ref|YP_939990.1| hypothetical protein Mkms_4008 [Mycobacterium sp. KMS]
 gi|108771317|gb|ABG10039.1| conserved hypothetical protein [Mycobacterium sp. MCS]
 gi|119696127|gb|ABL93200.1| conserved hypothetical protein [Mycobacterium sp. KMS]
          Length = 877

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K+  L ++ +R  +   + F D    +  G N +GK++++EA+  L   +
Sbjct: 1  MKLHRLVLTNYRGISRREIEFPDRGVVVISGANEIGKSSMIEALDLLFAAK 51


>gi|91781391|ref|YP_556597.1| hypothetical protein Bxe_A4456 [Burkholderia xenovorans LB400]
 gi|91685345|gb|ABE28545.1| hypothetical protein Bxe_A4456 [Burkholderia xenovorans LB400]
          Length = 833

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 66/203 (32%), Gaps = 22/203 (10%)

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY-VQKENFP 222
           +L+  R  L           + +EA        I+    E    L   I     +  +  
Sbjct: 524 KLLLERAELDARHKLREVKDAVLEA--------ISKY--EYCAKLQKCIDGTDTRGISRK 573

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
              LS T       D     LK     +L    K +S   RT        L +     A 
Sbjct: 574 STDLSRTLASKELADALNDELKRLKCHELQVVMKPESPGGRTQF-----KLTLQLPGNAT 628

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TD 340
             A  S GEQ+ + +  FLA  +L     G    ++ D+  + LD  +R  +   +    
Sbjct: 629 PAAILSEGEQRAIAIASFLAETKL----GGGLGGIVFDDPVSSLDHRRRWEVAERLVEES 684

Query: 341 IGSQIFMTGTDKSVFDSLNETAK 363
           +  Q+ +   D      L + A+
Sbjct: 685 LKRQVIVFTHDIYFLCILEQKAE 707


>gi|167037520|ref|YP_001665098.1| DNA repair protein RecN [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256752074|ref|ZP_05492942.1| DNA repair protein RecN [Thermoanaerobacter ethanolicus CCSD1]
 gi|320115934|ref|YP_004186093.1| DNA repair protein RecN [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856354|gb|ABY94762.1| DNA repair protein RecN [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|256749084|gb|EEU62120.1| DNA repair protein RecN [Thermoanaerobacter ethanolicus CCSD1]
 gi|319929025|gb|ADV79710.1| DNA repair protein RecN [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 566

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 72/206 (34%), Gaps = 24/206 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I        + L F+    +  G+ G GK+ +++++  L   R  R     D+ R
Sbjct: 2   LLALSIQNVALIDKVELQFEEGFNVLTGETGAGKSIVIDSVLLLLGSRASR-----DIIR 56

Query: 67  IGSPS------FFSTFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDVV 109
            G         FF    + + +E L ++ + LE           T   RS   +    V 
Sbjct: 57  TGEEKAIVEGIFFVDSNKDKIVEILEEVGLNLEEDDTLIINREITSSGRSYCRINGRIVP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           +  + ++   L           +            F D+   ++  R +  + ++ ++ +
Sbjct: 117 LSFLSKIGAFLVDILGQHEHQFLLDNTKHLSILDNFGDQKFKSLKERFKEVLEEYRKIQK 176

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
             +    +    +     ++ Q+ E+
Sbjct: 177 EISSFFKDEKEKNEIIDLLKYQIEEI 202


>gi|330988574|gb|EGH86677.1| ATP binding protein [Pseudomonas syringae pv. lachrymans str.
          M301315]
          Length = 429

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
            +R +    + FD   TI +  NG GKT IL+A
Sbjct: 2  QNYRCFGEFEIDFDPHLTILIASNGGGKTTILDA 35


>gi|332162709|ref|YP_004299286.1| recombination and repair protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325666939|gb|ADZ43583.1| recombination and repair protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859469|emb|CBX69813.1| DNA repair protein recN [Yersinia enterocolitica W22703]
          Length = 553

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 84/277 (30%), Gaps = 34/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 2   LTQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAIDALGLCLGSRS-----DGSMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E           L        R    IN   V +  
Sbjct: 57  LGATRADICARFSLADTPSARQWLEENHLDDSNECLLRRAIGSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMI 160
           + EL +HL       +   +       +++ LD            + V+ I  +  R + 
Sbjct: 117 LRELGQHLIQIHGQHAHQLLLR--PDHQKQLLDAYANQSVLLTEMKAVYQIWHQSCRALA 174

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKE 219
             ++    RN       +     +S   Q  E   + I   R+     L SL  + +Q  
Sbjct: 175 LHQQQSLERNARHELLQYQLKELNSFAPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL 234

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +       L+     K   +  A  +E    L +  +
Sbjct: 235 SDDEHNNILSQLYSAKHQLTELAGMDEQFNNLLNMLE 271


>gi|218961972|ref|YP_001741747.1| hypothetical protein CLOAM1705 [Candidatus Cloacamonas
          acidaminovorans]
 gi|167730629|emb|CAO81541.1| hypothetical protein CLOAM1705 [Candidatus Cloacamonas
          acidaminovorans]
          Length = 411

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          M   + +K + I  F+    L L  D +  + +G N  GK+ IL+A+  L+    
Sbjct: 1  MEVEM-LKQITIKGFKGITDLTLNLD-KINVLIGVNSSGKSTILQALDLLANCAS 53


>gi|332298201|ref|YP_004440123.1| chromosome segregation protein SMC [Treponema brennaborense DSM
          12168]
 gi|332181304|gb|AEE16992.1| chromosome segregation protein SMC [Treponema brennaborense DSM
          12168]
          Length = 977

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K L +  F+++A   R+ F    T  +G NG GK+N+++A+   L     +  R   
Sbjct: 1  MFLKSLEVFGFKSFADRTRIEFSDGITALLGPNGCGKSNVVDAVKWVLGEQGAKNMRAEK 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MEDVIFNGTE 70


>gi|300176733|emb|CBK24398.2| unnamed protein product [Blastocystis hominis]
          Length = 1050

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 9/75 (12%)

Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRRASYADVTR 66
            F  +  L++ F  Q T   G NG GK+ IL A+         S G   R + Y  + R
Sbjct: 2  RNFMCHEHLKIDFPQQITFITGPNGGGKSAILTALQVAFCIRANSTG---RASRYDQLIR 58

Query: 67 IGSPSFFSTFARVEG 81
           GS S       +  
Sbjct: 59 KGSNSPAKICVELNN 73


>gi|298710689|emb|CBJ32113.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 107

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  F  Y   + VF  +  + VG NG GK+ ++ AI+ L  G         D+  
Sbjct: 37  IVSLKMKNFLVYKDAKAVFGPRLNMVVGPNGSGKSTLVCAIA-LGLGGSL---KARDL-- 90

Query: 67  IGSPSFFSTFARVEGMEGLADI 88
              P+++   AR+E       +
Sbjct: 91  ---PAWWG--ARIEATRLQLRL 107


>gi|289606841|emb|CBI60988.1| unnamed protein product [Sordaria macrospora]
          Length = 162

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 7  IKFLNISEFRNYASLR----LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          I  L+I  FR + S      L  +   T  +G+N  GKT +++A+  +   R        
Sbjct: 11 INLLSIENFRLFGSADRAFHLPLNPGLTALIGENDAGKTAVIDAVRLVLGTR------DQ 64

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
          D+ R+    F  +     G E    I+I+L  R 
Sbjct: 65 DMLRVDPVDFHQSAP---GAERANQITIRLTFRG 95


>gi|256396025|ref|YP_003117589.1| ATP-dependent OLD family endonuclease [Catenulispora acidiphila
          DSM 44928]
 gi|256362251|gb|ACU75748.1| ATP-dependent OLD family endonuclease [Catenulispora acidiphila
          DSM 44928]
          Length = 669

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +++  + I  FR    + +  D   T+ VG N  GKT+++
Sbjct: 1  MRLTSIKIKNFRLLEDIEVGIDEIATLIVGRNNSGKTSLV 40


>gi|225683805|gb|EEH22089.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
          Length = 1221

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 75/265 (28%), Gaps = 25/265 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +++F  Y S       +  + +G NG GK+ +      L      R    A+  +
Sbjct: 131 IVRVKLTDFVTYTSAEFFPGPRLNMVIGPNGTGKSTL-----HLG-----RAKDPAEFVK 180

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL-------NKH 119
            G           +G     +  I+       +     +N         L        + 
Sbjct: 181 HGCEEATIEIELAKGPGHRQNPIIRRTIVRRDNKSTFTLNGKPSTKARVLELAHSFSIQI 240

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN-RLLTEGYF 178
             +   +P                      A  P       +  + +R    +LL     
Sbjct: 241 DNLCQFLPQDKVAEFAALSPINLLHSTQRAAAGPEMIE-WHESLKTLRAEQKKLLAANAE 299

Query: 179 DSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
           D    +++    ++  + V+    R  +I    +L+ +      F   + +L      + 
Sbjct: 300 DREQLANLQNRQELQRVDVERMQQR-ALIQKKIALLEKARPIPKFQEARQALKDARQKRR 358

Query: 237 D--QSFCALKEEYAKKLFD-GRKMD 258
           D       L+ + A  L     K D
Sbjct: 359 DLHNEQMELENQLAPALKSVNEKRD 383


>gi|33416919|gb|AAH55623.1| Zgc:66377 protein [Danio rerio]
          Length = 418

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
            I  + +  F  Y    +    +  + VG NG GK++I+ AI     G+     R     
Sbjct: 41  AIVRITMHNFLTYDHSEVFPGPKLNMIVGANGTGKSSIVCAICLGLAGKTSVLGRGDKVG 100

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              + G     S    +    G   ++ +++  +++S   L       + V+E  + L I
Sbjct: 101 LYVKRGCQRG-SVEIELYRTRGNLIVTREIQVENNQSTWMLNKKHASQKAVEEAVRELHI 159

Query: 123 SW 124
             
Sbjct: 160 QV 161


>gi|71899831|ref|ZP_00681981.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Xylella
           fastidiosa Ann-1]
 gi|71730422|gb|EAO32503.1| SMC protein, N-terminal:Structural maintenance of chromosome
           protein SMC, C-terminal:SMCs flexible hinge [Xylella
           fastidiosa Ann-1]
          Length = 1167

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 89/285 (31%), Gaps = 31/285 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPATLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             DV   GS +      A VE +   +D +I  E     +   + +   V R    +   
Sbjct: 61  LTDVIFSGSSARKPVAQATVELIFDNSDHTISGEFA---AFNEISVKRTVSRDGSSVYSL 117

Query: 120 LRISWLVPSMDRIFSGLSMERRRFL---DRMVFAI-------DPRHRRRMIDFERLMRGR 169
                    +  +F G  +  R +      M+  I          +        +    R
Sbjct: 118 NGTKCRRRDITDLFLGTGLGPRSYSIIEQGMISQIIEARPEDLRIYLEEAAGISKYKERR 177

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKI----NIARV----EMINALSSLIMEYVQKENF 221
               +           +     E+G ++      AR     + +     +     +   F
Sbjct: 178 KETESRIRHTQENLDRLNDLREEIGKQLEHLKRQARQAEQYQTLQEERRVKDAECKALQF 237

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
             +   L G       +     +    + L + R+ +     + +
Sbjct: 238 RELDTRLQGLRHALLQE-----ETRLQQLLAEQREAEMRIETSRV 277


>gi|302036921|ref|YP_003797243.1| DNA repair protein RecN [Candidatus Nitrospira defluvii]
 gi|300604985|emb|CBK41318.1| DNA repair protein RecN [Candidatus Nitrospira defluvii]
          Length = 565

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 79/269 (29%), Gaps = 24/269 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +   +F G+ G GK+ +++A++ L  G   R ++     R
Sbjct: 2   LTELRISNFGVIEQLAVRFGSGFIVFTGETGAGKSLLIDAVTLLVGG---RASTDQ--IR 56

Query: 67  IGSPSFFSTFARVE---------------GMEGLADISIKLETRDDRSVRCLQI-NDVVI 110
             S       A V                   G  DI I+         R     N   +
Sbjct: 57  AQSDEADLEAAFVLPSDHPILHLLRTKEFARPGETDIVIRRVISRTGRNRTYLNGNLCPV 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            +++EL   L           + S  +          + A+   ++     ++  +  R 
Sbjct: 117 HLLEELGGALVDVHGQHEQQSLLSSGAQLEALDAFGRLHALRQDYQAAYRSWQERVAERE 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
            L             +  Q  E+      A  +    L       +  +    +   L  
Sbjct: 177 TLTAHIAQRREREDLLRFQFQEISDAAVEAGED--ARLEQERPRLMHSQQLGDLSDQLHE 234

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
            L    DQ   +L     K L     +D 
Sbjct: 235 LL-YAGDQGVLSLLASARKLLAKMVSIDR 262


>gi|281344193|gb|EFB19777.1| hypothetical protein PANDA_012005 [Ailuropoda melanoleuca]
          Length = 1202

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3  HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKTANLRVKNIQ 62

Query: 63 DVTR 66
          ++  
Sbjct: 63 ELIH 66


>gi|190341575|gb|ACE74864.1| RecN [Enterobacter sp. E440]
          Length = 553

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 31/207 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F A  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHAGMTAITGETGAGKSIAIDALGLCLGGR-----ADADMVR 56

Query: 67  IGSPS-------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            GS                   +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  PGSGRADLCARFSLKDTPAALRWLEANQLDDGRECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +   +       ++  LD       +        R      R +
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PDHQKTLLDGYAGEHALTQKMAATYREWHQSCRAL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAEL 193
               +L  E    +   +    Q+ EL
Sbjct: 174 AQHQQLSQERAARAELLAY---QLKEL 197


>gi|153000394|ref|YP_001366075.1| hypothetical protein Shew185_1869 [Shewanella baltica OS185]
 gi|160876489|ref|YP_001555805.1| hypothetical protein Sbal195_3383 [Shewanella baltica OS195]
 gi|151365012|gb|ABS08012.1| conserved hypothetical protein [Shewanella baltica OS185]
 gi|160862011|gb|ABX50545.1| conserved hypothetical protein [Shewanella baltica OS195]
 gi|315268681|gb|ADT95534.1| hypothetical protein Sbal678_3392 [Shewanella baltica OS678]
          Length = 569

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGF--RRAS 60
          + I+ + I  +R + S ++      ++ +G+N  GKTN+ +A++    S    F  +R S
Sbjct: 1  MYIRTVEIENYRAFKSFKIKLSP-LSLIIGENEAGKTNLFDALALPLNSNDISFNKKRLS 59

Query: 61 YADVTRIGSPSFFSTFARVEGME 83
           +D+ R     F+      +G +
Sbjct: 60 VSDINREAIKDFYQAIINGKGDD 82


>gi|104779869|ref|YP_606367.1| hypothetical protein PSEEN0610 [Pseudomonas entomophila L48]
 gi|95108856|emb|CAK13552.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 451

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 116/364 (31%), Gaps = 49/364 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  + I  F++     +    + T  +G NG GK+ IL+A+ FLS  +  R     D+
Sbjct: 70  VQLNRMAIDNFKSLVGFTMSLT-KFTCLIGLNGAGKSTILQAMDFLS--QQMRG----DL 122

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                   +        +   ++I+ +LE   + +  V     N  ++R   E  +   +
Sbjct: 123 AGWLKSREWKAIDLKSKLSKSSNITFELECDLQGESLVWRGSFNRTLLRCTQESIEIDGV 182

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             +     R       E            DP       +++  +  R   L E       
Sbjct: 183 LVMKVDDGRFLVERDEE-----------GDPLTGDIAFEYQGSVLSR---LREESVSGRL 228

Query: 183 CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFDQS 239
                         I       ++ALS   +    +E            + FL    D  
Sbjct: 229 L-----VFKHFIATITS-----LDALSPQHLRRKSRETDGGLGFAGEKFSSFLHALPDAH 278

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT--IAHGSTGEQKVVLV 297
              L+E  +      + +D  + R   G     ++  Y D   +    H + G  +++ +
Sbjct: 279 KLKLRELLSGPYPQVQGIDLSALR--AGWKSLSILERYADHRFSTEARHMNDGMLRLMAI 336

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
                    I+ T      +L DE+   +  +    L   +     Q+ +T     V + 
Sbjct: 337 ---------IAETLSDHQFMLFDEVENGIHPEVIEFLLDHLVSTPQQVMVTTHSPMVLNY 387

Query: 358 LNET 361
           L + 
Sbjct: 388 LEDD 391


>gi|262403587|ref|ZP_06080145.1| ATP-dependent endonuclease [Vibrio sp. RC586]
 gi|262350091|gb|EEY99226.1| ATP-dependent endonuclease [Vibrio sp. RC586]
          Length = 543

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ + I+ FR    L L FD   T  +G+N  GK+++L+A+S   P  G
Sbjct: 1  MHLERIEIAGFRGIRRLSLTFDE-ITTLIGENTWGKSSLLDALSVALPADG 50


>gi|255746678|ref|ZP_05420625.1| ATP-dependent endonuclease [Vibrio cholera CIRS 101]
 gi|262151204|ref|ZP_06028341.1| ATP-dependent endonuclease [Vibrio cholerae INDRE 91/1]
 gi|255736432|gb|EET91830.1| ATP-dependent endonuclease [Vibrio cholera CIRS 101]
 gi|262030971|gb|EEY49598.1| ATP-dependent endonuclease [Vibrio cholerae INDRE 91/1]
          Length = 543

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ + I+ FR    L L FD   T  +G+N  GK+++L+A+S + P  G
Sbjct: 1  MHLERIEIAGFRGIRRLSLTFDE-ITTLIGENTWGKSSLLDALSVVLPADG 50


>gi|229513286|ref|ZP_04402751.1| ATP-dependent endonuclease [Vibrio cholerae TMA 21]
 gi|229349696|gb|EEO14651.1| ATP-dependent endonuclease [Vibrio cholerae TMA 21]
          Length = 543

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ + I+ FR    L L FD   T  +G+N  GK+++L+A+S + P  G
Sbjct: 1  MHLERIEIAGFRGIRRLSLTFDE-ITTLIGENTWGKSSLLDALSVVLPADG 50


>gi|167758095|ref|ZP_02430222.1| hypothetical protein CLOSCI_00433 [Clostridium scindens ATCC 35704]
 gi|167663992|gb|EDS08122.1| hypothetical protein CLOSCI_00433 [Clostridium scindens ATCC 35704]
          Length = 557

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 21/122 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L + +      + + F     I  G+ G GK+ IL +IS    GR      
Sbjct: 1   MLQNLHVKNLALID-----EIEVEFKDGLNILTGETGAGKSIILGSISLALGGR-----Y 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLA-----------DISIKLETRDDRSVRCLQINDVV 109
             D+ R G+   F     +   E              +  + L  R        +IN   
Sbjct: 51  TKDILRQGAEYGFVELTFLVENESQQKKLKEMDIYPEEGMVTLSRRLMAGRSVSRINGET 110

Query: 110 IR 111
           ++
Sbjct: 111 VQ 112


>gi|153830733|ref|ZP_01983400.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148873791|gb|EDL71926.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 283

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ + I+ FR    L L FD   T  +G+N  GK+++L+A+S + P  G
Sbjct: 1  MHLERIEIAGFRGIRRLSLTFDE-ITTLIGENTWGKSSLLDALSVVLPADG 50


>gi|254302670|ref|ZP_04970028.1| DNA repair protein RecN [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322862|gb|EDK88112.1| DNA repair protein RecN [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 553

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 80/255 (31%), Gaps = 28/255 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L + FD    +  G+ G GK+ IL  I+ L   +     +  D+ R
Sbjct: 2   LRELKIENLAIIDELDIEFDKGFIVLTGETGAGKSIILSGINLLIGEK-----ASVDMIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  +  +        E    +        D     + I     R        +    + 
Sbjct: 57  DGEENLVAQGVFDVDEEQKKALE---AMGIDTDGEEIIIRRSYSRSGKARA-FVNNVRIS 112

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
            +  +  +         L  +V     +      +  +L+   + L  +         ++
Sbjct: 113 LTDLKEIAST-------LVDIVGQHSHQMLLNKNNHIKLLD--SFLNKDEKDLKENLVNL 163

Query: 187 EAQMAELGVK---INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            AQ  E+  K   I   R E +        E+ + +     KL L    D   +  +  +
Sbjct: 164 LAQYREIDTKIENIEKERKETLEK-----KEFYEYQLEEIEKLKLKDGEDELLEAEYKRV 218

Query: 244 --KEEYAKKLFDGRK 256
              E+  +K+++  +
Sbjct: 219 FNAEKIREKVYESLE 233


>gi|73542060|ref|YP_296580.1| hypothetical protein Reut_A2374 [Ralstonia eutropha JMP134]
 gi|72119473|gb|AAZ61736.1| hypothetical protein Reut_A2374 [Ralstonia eutropha JMP134]
          Length = 579

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 24/55 (43%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          ++I  ++   F    +  ++     ++  G NG GK+++ EA+     G   R  
Sbjct: 1  MRITAIHARNFLGIRAADIITATPVSLICGPNGAGKSSVQEAVRMALTGESVRVG 55


>gi|147671695|ref|YP_001215318.1| hypothetical protein VC0395_0477 [Vibrio cholerae O395]
 gi|153212490|ref|ZP_01948259.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|153800679|ref|ZP_01955265.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|153827513|ref|ZP_01980180.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|229523040|ref|ZP_04412452.1| ATP-dependent endonuclease [Vibrio cholerae TM 11079-80]
 gi|229526847|ref|ZP_04416251.1| ATP-dependent endonuclease [Vibrio cholerae bv. albensis VL426]
 gi|229527609|ref|ZP_04417000.1| ATP-dependent endonuclease [Vibrio cholerae 12129(1)]
 gi|254285156|ref|ZP_04960122.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|262166956|ref|ZP_06034675.1| ATP-dependent endonuclease [Vibrio cholerae RC27]
 gi|262191044|ref|ZP_06049252.1| ATP-dependent endonuclease [Vibrio cholerae CT 5369-93]
 gi|297580336|ref|ZP_06942263.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|124116527|gb|EAY35347.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124123814|gb|EAY42557.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|146314078|gb|ABQ18618.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|149738565|gb|EDM52920.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
 gi|150425159|gb|EDN16936.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227015405|gb|ACP11614.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229333971|gb|EEN99456.1| ATP-dependent endonuclease [Vibrio cholerae 12129(1)]
 gi|229337005|gb|EEO02023.1| ATP-dependent endonuclease [Vibrio cholerae bv. albensis VL426]
 gi|229339890|gb|EEO04900.1| ATP-dependent endonuclease [Vibrio cholerae TM 11079-80]
 gi|262024597|gb|EEY43279.1| ATP-dependent endonuclease [Vibrio cholerae RC27]
 gi|262033065|gb|EEY51595.1| ATP-dependent endonuclease [Vibrio cholerae CT 5369-93]
 gi|297535982|gb|EFH74816.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|327485573|gb|AEA79979.1| Predicted ATP-dependent endonuclease of the OLD family [Vibrio
          cholerae LMA3894-4]
          Length = 543

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ + I+ FR    L L FD   T  +G+N  GK+++L+A+S + P  G
Sbjct: 1  MHLERIEIAGFRGIRRLSLTFDE-ITTLIGENTWGKSSLLDALSVVLPADG 50


>gi|164657536|ref|XP_001729894.1| hypothetical protein MGL_2880 [Malassezia globosa CBS 7966]
 gi|159103788|gb|EDP42680.1| hypothetical protein MGL_2880 [Malassezia globosa CBS 7966]
          Length = 1358

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 4   RIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
           R+ I  L + +F++YA    +  F    +  VG NG GK+N+++A+ F+   R    R+ 
Sbjct: 50  RLVIHKLVLQDFKSYAGRQEIGPFHKSFSSIVGPNGSGKSNVIDALLFVFGWRANKMRQG 109

Query: 60  SYADVTR 66
             +++  
Sbjct: 110 RLSELIH 116


>gi|58266090|ref|XP_570201.1| chromosome associated protein [Cryptococcus neoformans var.
          neoformans JEC21]
 gi|134110944|ref|XP_775936.1| hypothetical protein CNBD3430 [Cryptococcus neoformans var.
          neoformans B-3501A]
 gi|50258602|gb|EAL21289.1| hypothetical protein CNBD3430 [Cryptococcus neoformans var.
          neoformans B-3501A]
 gi|57226434|gb|AAW42894.1| chromosome associated protein, putative [Cryptococcus neoformans
          var. neoformans JEC21]
          Length = 1208

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y        F   H + VG NG GK+N   AI F
Sbjct: 1  MYIKTITIQGFKSYRDQVAVDPFSPGHNVVVGRNGSGKSNFFSAIRF 47



 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 59/342 (17%), Positives = 115/342 (33%), Gaps = 51/342 (14%)

Query: 56   FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIK-------------------LETRD 96
             RR+   ++ R          +  EG  G  +  I                    +    
Sbjct: 857  LRRSELRNLVR-DIEQLEEKVSESEGRVGELNSEISKISENLERVQTQQMENTRAIMRVQ 915

Query: 97   DRSVRCLQINDVVIRVVDELNKHLRISWLVPS----------MDRIFSGLSMERRRFLDR 146
              + R L     +I   +E N  +R   ++P            D+I       R   ++ 
Sbjct: 916  KNAERYLTKRQTLINRKEECNNAIRDLGVLPEEAFSKYIDQRSDKIIK-----RLHKVND 970

Query: 147  MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
             +      +++    +    + R+ L+               ++ EL   ++  + E I 
Sbjct: 971  GLKKFAHVNKKAFEQYSNFTKQRDELMDR----RDELDQSAIKIEELIETLDQRKDEAIE 1026

Query: 207  ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
                 + +Y ++     + L     +  K    F  ++EE  + L  GR+   +   T +
Sbjct: 1027 RTFKQVSKYFEEVFETLVPLGKGELIMQKKTDGF--IEEESEESLEQGREKSDIDSYTGV 1084

Query: 267  GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
                S       D+   I   S G++ +V + +  A           AP  L DEI A+L
Sbjct: 1085 SIRVS--FNSKHDEGQRIQQLSGGQKSLVALALVFA-----IQKCDPAPFYLFDEIDANL 1137

Query: 327  DEDKRNALFRIVTDIGSQI-FMTGTDKSVFDSLNETAKFMRI 367
            D   R A+  ++  + +   F+T T KS  + L +  KF  +
Sbjct: 1138 DAQYRTAVATMIHTLSTSAQFITTTFKS--EMLAQADKFYGV 1177


>gi|292491546|ref|YP_003526985.1| chromosome segregation protein SMC [Nitrosococcus halophilus Nc4]
 gi|291580141|gb|ADE14598.1| chromosome segregation protein SMC [Nitrosococcus halophilus Nc4]
          Length = 1169

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/284 (16%), Positives = 100/284 (35%), Gaps = 44/284 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     L   +     VG NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKKIKLAGFKSFVDPTSLPLPSNCVAIVGPNGCGKSNVIDAVRWVMGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
            ADV   GS S            F ++   + G     +  I ++ +  R  +    +N 
Sbjct: 61  MADVIFNGSTSRKPVGQCSVELVFDNSEGSLGGQYATYN-EIAIKRQVSRDGQSHYFLNS 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   R+F   +       ERRR 
Sbjct: 120 ARCRRRDITDIFLGTGLGPRSYAIIEQGMISRLIEAKPEELRVFLEEAAGISKYKERRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
            +  +         R+ D    +  +   L     ++      +    E+  +I   R +
Sbjct: 180 TENRMGHTSEN-LNRINDLREEIGRQLNTLKRQAKNAEKYQEFKQLEREIKAQIQALRWQ 238

Query: 204 MINAL-SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
            ++        +  QKE     +++    ++ + +Q   AL + 
Sbjct: 239 ALDEEGRKQNQDIEQKETLLEGRVAALRQVEARLEQQREALHQA 282


>gi|238791288|ref|ZP_04634927.1| hypothetical protein yinte0001_30410 [Yersinia intermedia ATCC
           29909]
 gi|238729421|gb|EEQ20936.1| hypothetical protein yinte0001_30410 [Yersinia intermedia ATCC
           29909]
          Length = 471

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/393 (14%), Positives = 123/393 (31%), Gaps = 65/393 (16%)

Query: 8   KFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISF-LSPGRG---FRRASYA 62
           + L+IS FR    L L F  +   +  G+NGVGK++IL+ +S+ LS       ++     
Sbjct: 2   EELSISNFRALDELTLNFSEKNLIVLAGENGVGKSSILDGLSYSLSWLVNRILYKGGKGK 61

Query: 63  DV----TRIGSPSFFSTFARVEGMEGLADIS---IKLETRDDRSVRCLQINDVVIRVVDE 115
           ++     R  S   +S+      +     I     +L      + +        +  + +
Sbjct: 62  EIERLDIREDSDKGYSSVITKLNINRHTTIHFELCELHIGSSTNKKSYLNEVTKLGALYK 121

Query: 116 LNKHLRISWLVP-----SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
                  S+ +P      + R     + +     D      + R       F        
Sbjct: 122 FAGENSSSFTLPIFAYYGVSRTIDISTKDINVIDDINSSQNNNRFEAYTNAF-------- 173

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                G  D                     R++ I    +   +    ++    KL++  
Sbjct: 174 ----SGKADIKSFLKW------------FKRLDDIEKHRATSSDSFSADDDLINKLAILA 217

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDS--------------MSRRTLIGPHRS---DL 273
             D    +   +LK++  KK  D    +               M   T +         L
Sbjct: 218 PSDLNARKLLESLKQKNQKKEDDNYLWEISKIKKNLNQTVNFFMDGYTDLSIEVEPVVRL 277

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL-----ISNTTGFAPILLLDEISAHLDE 328
            ++     + I   S GE+ ++ + + ++   +     + N      I+++DE+  HL  
Sbjct: 278 TINKNGHKLNILQLSQGEKSLLALLLDISRRMIILNPQLDNPLKSPGIIIIDELDLHLHP 337

Query: 329 DKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
             +  +      I    Q+ ++     V   + 
Sbjct: 338 RWQRNIVTYFNLIFPNCQLIVSTHSPQVISEVR 370


>gi|254413474|ref|ZP_05027244.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179581|gb|EDX74575.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 456

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/419 (14%), Positives = 130/419 (31%), Gaps = 90/419 (21%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           ++I+ + ++    + +L +            T+FVG+NG GKT++L+A   L+    +  
Sbjct: 1   MEIQRVILNNIGLFENLEIPLAPTEQNPSNITVFVGNNGAGKTSVLKA---LATSLSWFT 57

Query: 59  ASYA-----------DVTRIGSPSFFSTFARVEGMEGLAD------------ISIKLETR 95
           A              D   + + +  S    +    G +D             ++     
Sbjct: 58  ARLRTEKGSGNPIPEDAI-LNTANAASIEIEICDASGTSDNPNQNEIQHHFKWTLAKNRT 116

Query: 96  DDRSVRCLQIND---VVIRVVDELNKH----LRISWLVPSMDRIFSGLSMERRRFLDRMV 148
             +S     +ND   +  R  D L +     L I    P             R  LD  +
Sbjct: 117 GRKSRYTSHLNDCTRLANRYRDALTRDHKTRLPIIGFYP-----------VERVVLDIPL 165

Query: 149 FAIDPRHRRRMIDFERLMRG-----RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
                    ++  ++  +       R         D+   S++                +
Sbjct: 166 KIRTKHTFLQLDGYDNSLSQGVDFRRFFEWFREREDTENESAMPE--------------D 211

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
           ++N L  L+      E  P     L        D+   A++    + +     +    + 
Sbjct: 212 VLNQLKPLL------ETNPDAWQRLNELNASAKDRQLTAVRTAIRQFMPQMDNLRVRRK- 264

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILL 318
                 R  + +D   + + +A  S GE+ ++ +       LA     + N      I+L
Sbjct: 265 -----PRLHMAIDKNGETLNVAQLSQGEKSLMALVGDIARRLAMLNPALENPLAGDGIVL 319

Query: 319 LDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           +DE+  HL    + +L   +       Q  +T     V            ++N +   +
Sbjct: 320 IDEVDLHLHPSWQRSLCDRLIATFPNCQFVLTTHSPLVISDCK-NVLVYTLTNGELQQL 377


>gi|307268065|ref|ZP_07549453.1| DNA repair protein RecN [Enterococcus faecalis TX4248]
 gi|312900455|ref|ZP_07759762.1| DNA repair protein RecN [Enterococcus faecalis TX0470]
 gi|306515706|gb|EFM84233.1| DNA repair protein RecN [Enterococcus faecalis TX4248]
 gi|311292431|gb|EFQ70987.1| DNA repair protein RecN [Enterococcus faecalis TX0470]
 gi|315031729|gb|EFT43661.1| DNA repair protein RecN [Enterococcus faecalis TX0017]
 gi|315034214|gb|EFT46146.1| DNA repair protein RecN [Enterococcus faecalis TX0027]
 gi|315147936|gb|EFT91952.1| DNA repair protein RecN [Enterococcus faecalis TX4244]
 gi|323480224|gb|ADX79663.1| DNA repair protein RecN [Enterococcus faecalis 62]
 gi|329574363|gb|EGG55935.1| DNA repair protein RecN [Enterococcus faecalis TX1467]
          Length = 557

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 32/262 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2   LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVVIR 111
            G+        FS     E  + L ++ I+ E          +   ++V  +    V I 
Sbjct: 57  QGANKCTLEGLFSMPKSQELKKLLEELGIETEEDSLVIQRDISASGKNVCRVNGRIVNIT 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERL- 165
            +  + ++L           +      ER       F  + + A+  ++ +   ++  L 
Sbjct: 117 NLKRIGEYLVDIHGQNEHQELMQ---SERHIDMLDEFGGKKLLAVKEKYTQAYQEYRALE 173

Query: 166 --MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
             +R R +   E             ++A     +     +++   + L       +    
Sbjct: 174 AKVRKRQKNEKEFAQRMDMLHFQSDEIAS-AQLVAGEEEQLLEERNKLNNFQKIADALTI 232

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
              +L G  D   D+   ++ E
Sbjct: 233 SYAALNGEDDSSLDKIGTSMNE 254


>gi|294651981|ref|ZP_06729265.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
          19194]
 gi|292822137|gb|EFF81056.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
          19194]
          Length = 515

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++ + I  ++    LR+ F+ + T+ +GDNGVGKT IL+AI
Sbjct: 58 LEKIEICNYKKIRKLRINFEKELTVIIGDNGVGKTTILDAI 98


>gi|256026683|ref|ZP_05440517.1| DNA repair protein recN [Fusobacterium sp. D11]
          Length = 553

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 80/255 (31%), Gaps = 28/255 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L + F+    +  G+ G GK+ IL  I+ L   +     +  D+ R
Sbjct: 2   LRELKIENLAIIDELDIEFEKGFIVLTGETGAGKSIILSGINLLIGEK-----ASVDMIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  +  +        E       KLE           I         +    +    + 
Sbjct: 57  DGEENLVAQGVFDVDEEQKK----KLEAMGIDIDGDEIIIRRSYSRSGKARAFVNNVRIT 112

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
            +  +  +         L  +V     +      +  +L+   + L  +         S+
Sbjct: 113 LADLKEIAST-------LVDIVGQHSHQMLLNKNNHIKLLD--SFLNKDEKDLKENLVSL 163

Query: 187 EAQMAELGVK---INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            +Q  E+  K   I   R E +        E+ + +     KL L    D   +  +  +
Sbjct: 164 LSQYREINTKIENIERERKETLEK-----KEFYEYQLEEIEKLKLKDGEDEILEAEYKRV 218

Query: 244 --KEEYAKKLFDGRK 256
              E+  +K+++  +
Sbjct: 219 FNAEKIREKVYESLE 233


>gi|257068539|ref|YP_003154794.1| DNA repair protein RecN [Brachybacterium faecium DSM 4810]
 gi|256559357|gb|ACU85204.1| DNA repair protein RecN [Brachybacterium faecium DSM 4810]
          Length = 590

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 61/197 (30%), Gaps = 19/197 (9%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + ++I+ + + +        L F    T   G+ G GKT I+  +S L  GR  R  +
Sbjct: 1   MLSTLRIRHIGVID-----DAMLDFGPGFTALTGETGAGKTMIVTGLSMLLGGRLDRGRT 55

Query: 61  ------YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--V 112
                    ++  G     +    +   E   ++ +      D   R  QI  V +    
Sbjct: 56  RGSSTVDGTLSLTGHTELAAALDELGADEDDGEVLVVRRVTRDGRSRA-QIGGVPVPIGT 114

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           +  L              R+       +R  LDR     +      +     + R R+ L
Sbjct: 115 LSRLVGTAVTVHGQSDQQRL--RDPEAQREALDRFA---EAEVGTLLRRHREIWRERSAL 169

Query: 173 LTEGYFDSSWCSSIEAQ 189
                      +  + +
Sbjct: 170 AARVTELEELLAERDRR 186


>gi|168186205|ref|ZP_02620840.1| DNA repair protein RecN [Clostridium botulinum C str. Eklund]
 gi|169295642|gb|EDS77775.1| DNA repair protein RecN [Clostridium botulinum C str. Eklund]
          Length = 564

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 96/270 (35%), Gaps = 21/270 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI  F    SL + F+    +  G+ G GK+ +++AI+++  G  F       + R
Sbjct: 2   LLQLNIKNFALIESLTINFEKGFNVLTGETGAGKSILIDAINYV-LGEKF----NKSLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDD----------RSVR-CLQINDVVIRVVDE 115
            G    F             ++   LE   D          +S +  +++N   I + D 
Sbjct: 57  TGENRTFVEAIFDIENTSTLEMLKSLEMSSDELLIVSRETFKSGKSIVKVNGKSILISDI 116

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFERLMRGRNRLLT 174
                 +  +           + +   +LD      +         ++++L+   +  + 
Sbjct: 117 KKISSTLINIHGQHQNQELLNASKHIDYLDEFGEELLKSSFIDYKENYKKLL-QIDEKIK 175

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           E   D      +   +     +I  A++E IN  + L  +Y    N   I  SL    + 
Sbjct: 176 EFGIDDGEKEKLVDFLKYQIDEIENAKLE-INEDTELQEQYTILNNAEKIAKSLAKSYNI 234

Query: 235 KF--DQSFCALKEEYAKKLFDGRKMDSMSR 262
            +  D ++ ++ +     + + R ++   +
Sbjct: 235 LYATDDNYRSIYDSLNTVIRELRSVEGHMK 264


>gi|167924625|ref|ZP_02511716.1| hypothetical protein BpseBC_39065 [Burkholderia pseudomallei
          BCC215]
          Length = 783

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-D 63
          + I+ + I  FR     R+   +  +IFVG N  GKT+   A+   +       +     
Sbjct: 1  MHIETVWIRNFRRLKDARIDLASDISIFVGSNNSGKTSAGHALQLFTAA-----SRDRFS 55

Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLET 94
          +    S  +    A  EG EG    SI ++ 
Sbjct: 56 LHDFSSDCWDDINAFGEGAEGSELPSISIDI 86


>gi|157803368|ref|YP_001491917.1| DNA repair protein RecN [Rickettsia canadensis str. McKiel]
 gi|157784631|gb|ABV73132.1| DNA repair protein RecN [Rickettsia canadensis str. McKiel]
          Length = 546

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 55/300 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  F     L + F+    +  G+ G GK+ +L+AI F                 
Sbjct: 2   LQSLLVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILFC---------------- 45

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                                +  K+     +  +   +  ++  + +E+   L  +++ 
Sbjct: 46  ---------------------LGYKISNNIIKRGKDYAVVSIIYSLNEEIKNFLLQNFIE 84

Query: 127 PSMDRIFSGL--SMERRRF------LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           P    +   L  +  R++F      +++ +      +   +          N  L E   
Sbjct: 85  PEELLLVKCLHKTEGRKKFFINNQVVNKTLMQQLATYLFELHGQNH-----NISLLEANT 139

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                 S    + +   +++    ++       I E   K+N    ++    F   +  +
Sbjct: 140 QRDILDSYGNIL-DFRAELSKCY-QIWKDTQKEIAEITLKQNSIEQEIDYLSFATEELTK 197

Query: 239 SFCAL--KEEYAKKLFDGRKMDSMSRRTLIGPHR-SDLIVDYCDKAITIAHGSTGEQKVV 295
               +  +E+ A    D +  D   +       + ++  ++             G+ K  
Sbjct: 198 LNIQIGEEEKLANIRKDLQNKDKELQLIKDTLEQINNPEINISINRAEKLLARQGQNKHF 257


>gi|313124218|ref|YP_004034477.1| DNA repair ATPase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312280781|gb|ADQ61500.1| DNA repair ATPase [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 808

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 78/221 (35%), Gaps = 25/221 (11%)

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--------------VEMINALS 209
           +L+R +  L  E        S+ + +MA L  +    R               E+ ++  
Sbjct: 589 KLLRQKQELEKELADKQKAVSARQQEMANLLAE--EKRYASSSQVAEDKQTLAEIADSFR 646

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM--SRRTLIG 267
               +Y+       +                  L ++Y + L  GR  + +  ++ +   
Sbjct: 647 RDSQDYLASLLAGEVIGRTLDLASNDRFPKMLKLAQDYLEILTGGRYREILLPAKLSKKT 706

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           P +   +V    K I +A+ S G Q+ +   + LA    I +       +L+D+   + D
Sbjct: 707 PLK---VVRKDKKKIPLAYLSRGTQEQLYFALKLAFVMQIKDKIDLP--VLIDDSFVNFD 761

Query: 328 EDKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETAKFMR 366
             +   +  ++  +    QI +    + + ++++      R
Sbjct: 762 GPRTGYIVDMLKKMSKDKQILVFTAREDLAEAVSAAPIRYR 802


>gi|302385757|ref|YP_003821579.1| ATP-dependent OLD family endonuclease [Clostridium
          saccharolyticum WM1]
 gi|302196385|gb|ADL03956.1| ATP-dependent OLD family endonuclease [Clostridium
          saccharolyticum WM1]
          Length = 618

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          ++I  ++I  F++   + +       I VG N  GKT IL+AI   +
Sbjct: 1  MQITSVHIKNFKSIRDMEIQGVENALILVGKNNTGKTGILDAIRAAA 47


>gi|209364058|ref|YP_001424737.2| DNA repair protein [Coxiella burnetii Dugway 5J108-111]
 gi|207081991|gb|ABS77588.2| DNA repair protein [Coxiella burnetii Dugway 5J108-111]
          Length = 608

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 80/278 (28%), Gaps = 50/278 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    SL L FD   T+  G+ G GK+ I++A++ L+ G      +   + R
Sbjct: 54  LTHIHIKNFIVVESLSLDFDKGLTVLTGETGAGKSIIVDAVN-LALGE----RADTAIIR 108

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             +     S    +             +  D       +I     R    +N H     L
Sbjct: 109 KEADQCDISLCFDISNNSDAQAWLKAKDFADGFDCIVRRIIFPDGRSRSTINGHPCTQQL 168

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +              R F    +  I  +H                LL            
Sbjct: 169 I--------------REFA-HFILQIHGQH------------QHQTLLKRERQQQ----- 196

Query: 186 IEAQMAELGVKINIARVEM---------INALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                A     ++  R +          +N L+        + +   ++       +   
Sbjct: 197 WLDNFAHHHELLDKIRQDYFQWKNLQTELNQLNEQAKNRDHELSL--LRYQFEELENANL 254

Query: 237 DQSFCALKEEYAKKLFDGRKM-DSMSRRTLIGPHRSDL 273
            +       +  ++L + + + + +++   +     ++
Sbjct: 255 QEGEWKTLSQQHQQLHNAQSLIEKLTQAITLTVQSDEI 292


>gi|171058649|ref|YP_001790998.1| hypothetical protein Lcho_1966 [Leptothrix cholodnii SP-6]
 gi|170776094|gb|ACB34233.1| conserved hypothetical protein [Leptothrix cholodnii SP-6]
          Length = 424

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 2  TNRI-KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR- 57
             + +I++L +  FR    +        T+ +G NG GK+ + +  +FL+     G R 
Sbjct: 12 PGGMARIEYLKVQNFRALHDVEFKDLTPLTVLLGPNGSGKSTVFDVFAFLAECFELGLRK 71

Query: 58 ----RASYADVTRIGSPSFFSTFARVE 80
              R    ++   G+    S   +  
Sbjct: 72 AWDKRGRAKELKTRGAEGPVSVEIKYR 98


>gi|241202950|ref|YP_002974046.1| hypothetical protein Rleg_0196 [Rhizobium leguminosarum bv.
          trifolii WSM1325]
 gi|240856840|gb|ACS54507.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
          trifolii WSM1325]
          Length = 654

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          +++K  ++SEFR+  AS  +      T  VG N  GKT +L+A+  LSP
Sbjct: 1  MRLKSFSVSEFRSIIASGEITLGD-VTCLVGKNEAGKTALLKALYKLSP 48


>gi|163733899|ref|ZP_02141341.1| chromosome segregation protein, putative [Roseobacter litoralis Och
           149]
 gi|161393010|gb|EDQ17337.1| chromosome segregation protein, putative [Roseobacter litoralis Och
           149]
          Length = 1151

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFSKLRLTGFKSFVDPTDLVIADGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS---------IKLETRDDRSVRCLQIN 106
             DV   G+      +F     +++  + LA            ++  TRD  S   +   
Sbjct: 61  MEDVIFAGAATRPARNFAEVVLQIDNSDRLAPAGFNDDDVLEIVRRITRDVGSAYKVGAR 120

Query: 107 DVVIRVVDELNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
           DV  R V  L          P++ R      + +     RRR L+
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQIAELINAKPKSRRRILE 165


>gi|329297612|ref|ZP_08254948.1| recombination and repair protein [Plautia stali symbiont]
          Length = 553

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 68/207 (32%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAQLTISNFAIVRELEIDFHRGMTAITGETGAGKSIAIDALGLCLGGR-----AEAGMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              PS     A  +  +G   +  ++ + D RS   +    V +  
Sbjct: 57  QGASRADICARFQLKASPSAQRWLAENQLDDGNECLLRRVISADGRSRGFINGTSVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           + EL + L       +   +    +  ++  LD      D      +H +R     R + 
Sbjct: 117 LRELGQLLIQIHGQHAHQLLLK--TDHQKHLLDAYAAHDDRLAEMRQHYQRWHHSCRALA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
              +L  E             ++ E  
Sbjct: 175 QHQQLSQEREARRELLQYQLKELNEFA 201


>gi|254500968|ref|ZP_05113119.1| RecF/RecN/SMC N terminal domain, putative [Labrenzia alexandrii
           DFL-11]
 gi|222437039|gb|EEE43718.1| RecF/RecN/SMC N terminal domain, putative [Labrenzia alexandrii
           DFL-11]
          Length = 1156

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 24/169 (14%)

Query: 1   MTNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--- 56
           M   ++   L I+ F+++   +  + D   T  VG NG GK+N++EA+ ++     +   
Sbjct: 1   MRAPMRFSKLRIAGFKSFVEPMEFIIDDGLTGVVGPNGCGKSNLVEALRWVMGENSYKNM 60

Query: 57  RRASYADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQ 104
           R +   DV   G     + +       +E  +  A  +      +++  R +R      +
Sbjct: 61  RASGMDDVIFSGSLNRPARNTAEVTLFLENNDHTAPSAFNDADLLEVSRRIEREQGSNYK 120

Query: 105 INDVVIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
           IN   +R  D   L          P+M R      + +     RR+ L+
Sbjct: 121 INAKDVRARDVQLLFADASTGARSPAMVRQGQIGELIAAKPTSRRKILE 169


>gi|222085163|ref|YP_002543693.1| chromosome partition protein [Agrobacterium radiobacter K84]
 gi|221722611|gb|ACM25767.1| chromosome partition protein [Agrobacterium radiobacter K84]
          Length = 1153

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFNRLRLVGFKSFVEPAEFVIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  +  A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVGLYLDNSDRTAPAAFNDSDEIQVTRRIEREQGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR+ L+
Sbjct: 121 EARAKDVQLLFADASTGARSPSMVGQGRIGELIQAKPQARRQLLE 165


>gi|120436824|ref|YP_862510.1| hypothetical protein GFO_2487 [Gramella forsetii KT0803]
 gi|117578974|emb|CAL67443.1| conserved hypothetical protein [Gramella forsetii KT0803]
          Length = 674

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +IK L +  F+   +L++    + T   G N  GKT I++A S+L  G+
Sbjct: 5  QIKSLILRNFKGIKNLKIEDFQKETSIWGANATGKTTIVDAFSWLLFGK 53


>gi|50914594|ref|YP_060566.1| hypothetical protein M6_Spy1248 [Streptococcus pyogenes MGAS10394]
 gi|50903668|gb|AAT87383.1| RecN [Streptococcus pyogenes MGAS10394]
          Length = 554

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 83/236 (35%), Gaps = 34/236 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V
Sbjct: 1   MMLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTEV 55

Query: 65  TRIGS-----PSFFSTFARVEGMEGLADISIKLE----TRDD---RSVRCLQINDVVIRV 112
            R G+       FFS  A  E +  L    I +E     R D         +IN  ++ +
Sbjct: 56  IRRGANKAEIEGFFSVDATPELVACLESSGIAMEEELIIRRDIFANGRSVSRINGQMVNL 115

Query: 113 V----------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
                      D   +H +   + P + +           F D+    +   ++     +
Sbjct: 116 ATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDA------FGDKAFEQLKENYQLIFDRY 169

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQ 217
           + L R                  +  Q+AE+    ++    + +N     +M + Q
Sbjct: 170 KSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQ 225


>gi|83815915|ref|YP_446158.1| hypothetical protein SRU_2052 [Salinibacter ruber DSM 13855]
 gi|294508081|ref|YP_003572139.1| hypothetical protein SRM_02266 [Salinibacter ruber M8]
 gi|83757309|gb|ABC45422.1| conserved hypothetical protein [Salinibacter ruber DSM 13855]
 gi|294344409|emb|CBH25187.1| conserved hypothetical protein [Salinibacter ruber M8]
          Length = 427

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
           +F++Y   R       T+ +G N  GK+N LE I FLS     +     D  R      
Sbjct: 8  EDFKSYREARFPLAP-LTLLIGTNASGKSNALEGIRFLSWLS--KGQRLDDALRAVQEDD 64

Query: 73 FSTFARVE--GMEGLADISIKLETRDDR 98
           +    +E  G  G    S+       +
Sbjct: 65 ITIRGSLETLGYHGAESFSLGCSLTSTK 92


>gi|50287189|ref|XP_446024.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49525331|emb|CAG58948.1| unnamed protein product [Candida glabrata]
          Length = 1105

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 91/297 (30%), Gaps = 42/297 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  Y            + +G NG GK+  + A+     G+     R     D
Sbjct: 38  IVKIRLENFVTYNYTEFNLSPSLNMIIGPNGSGKSTYVCAVCLGLAGKPEYIGRSKQVED 97

Query: 64  VTRIGSP----------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--- 104
             + G                   F  +        G     + +    ++  +  +   
Sbjct: 98  FIKNGQDTSKIEIVLKDDPNIDIEFLGSSFHRIRNNGNYKGLLTITRNLEKRTKIGRNLE 157

Query: 105 --------INDVV------IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
                   IN +         +V + +  L       S +R+     +   + LD  + A
Sbjct: 158 KRRTQEYSINGLPTTESNVRNLVSKFHIQLDNLCQFLSQERVEEFAKLRPEKLLDETIRA 217

Query: 151 IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI--EAQMAELGVKINIARVEMINAL 208
           ID          ++L      +  E   ++     +  + +  +  V++     E ++ L
Sbjct: 218 IDSELLSMFEVLKKLQLQEIEMSNEIQTNTDSLKKLKTDEENFQQEVQLLNEYQETLDTL 277

Query: 209 SSL--IMEYVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKMDSMS 261
                ++ Y++ ++     L+    ++G     Q F   +E Y + L    + D+  
Sbjct: 278 DKHKKLLPYLKIQDHREKLLTYKRQVEGAKKQLQEFQKEREPYMQVLASLNESDAQL 334


>gi|33598009|ref|NP_885652.1| DNA repair protein [Bordetella parapertussis 12822]
 gi|33574438|emb|CAE38776.1| DNA repair protein [Bordetella parapertussis]
          Length = 553

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 25/198 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F       L F    T+F G+ G GK+ +++A++     RG      A + R
Sbjct: 2   LRTLHIRDFVIVEQTELHFGDGFTVFSGETGAGKSILIDALALTLGERG-----DASMLR 56

Query: 67  IGSPSFFSTFA---------RVEGMEGLADISIKLETRDDRSVR-CLQINDVV--IRVVD 114
            G+     T            +   E  +   + L    D   R    IN +   I  + 
Sbjct: 57  EGAARADITAVFDAPPALRDWLAERELDSGDELALRRVIDSQGRSRAYINGMPATIAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNRL 172
           EL   L       +   +       +R  LD      +      +    +  L R     
Sbjct: 117 ELGDGLVDIHGQHAHQSLMR--PEAQRDLLDAHGGHAELRQTVAQAWKQWRALARQ---- 170

Query: 173 LTEGYFDSSWCSSIEAQM 190
           L     D+   ++   ++
Sbjct: 171 LDTAEQDAEALAAERDRL 188


>gi|238792142|ref|ZP_04635777.1| hypothetical protein yinte0001_16380 [Yersinia intermedia ATCC
          29909]
 gi|238728379|gb|EEQ19898.1| hypothetical protein yinte0001_16380 [Yersinia intermedia ATCC
          29909]
          Length = 382

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + I  L IS +R+   + L    Q  +  G NG GK+++  A+  LS
Sbjct: 1  MMITRLAISGYRSLRDVVLELG-QLNVITGANGSGKSSLYRALRLLS 46


>gi|254511722|ref|ZP_05123789.1| DNA repair protein RecN [Rhodobacteraceae bacterium KLH11]
 gi|221535433|gb|EEE38421.1| DNA repair protein RecN [Rhodobacteraceae bacterium KLH11]
          Length = 549

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 6/107 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F        G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRALDIRDMLIIDRLELTFQPGLNALTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+          +        +  +        +   ++N    R 
Sbjct: 57  QGAAQGEVVAEFELSDDHPAHGVLAEAGLPGGEELILRRVNTAEGRK 103


>gi|161528159|ref|YP_001581985.1| SMC domain-containing protein [Nitrosopumilus maritimus SCM1]
 gi|160339460|gb|ABX12547.1| SMC domain protein [Nitrosopumilus maritimus SCM1]
          Length = 1174

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG----RGFRR 58
          + +K + I  F+++   +  + F+       G NG GK+NIL+AI   + G    +  R 
Sbjct: 2  VHVKKVEIFGFKSFGFKNTTVQFEPGLVSISGPNGSGKSNILDAI-IFAMGENKPKVMRV 60

Query: 59 ASYADVTR 66
               +  
Sbjct: 61 DKLRSLIH 68



 Score = 37.2 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 72/199 (36%), Gaps = 22/199 (11%)

Query: 180  SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
             S    + A++A L      A    +           +K +    + S+  F++      
Sbjct: 959  ESIVQGLSAELASLNALNAKAPETYLEVSYGYRSMSTRKNSLEEERNSIVKFIEDIEKDK 1018

Query: 240  FCALKEEYAKKLFDGRKM-DSMSRRT--LIGPHRSDLI-------VDYCDKAITIAHG-S 288
                 + + K   + + + + M+     L   +  D+        + + +K    +   S
Sbjct: 1019 RQTFLDAFDKVDKEIKLIFNKMTGGNAWLELQNEDDIFNSGISYLIQFPNKPKRESTSIS 1078

Query: 289  TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD--IGSQIF 346
             GE+ +  +   LA  +L       +P  L DE+ AHLD      L  I+ +    SQ  
Sbjct: 1079 GGEKTLAAIVFVLALQKL-----KPSPFYLFDEVDAHLDAPNSERLSNILEERAKESQFI 1133

Query: 347  MTGTDKSVFDSLNETAKFM 365
            M     S+ DS+ + AK +
Sbjct: 1134 M----VSLKDSVVQKAKLI 1148


>gi|310764833|gb|ADP09783.1| recombination and repair protein [Erwinia sp. Ejp617]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 64/208 (30%), Gaps = 28/208 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LSQLTISNFAIVRELEIDFQRGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  QGASRADICARFSLKDTPSAQRWLLDNQLDDGNECLLRRVIGSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDPRHRRRMIDFERLM 166
            + +L + L       +   +    S  ++  LD       +     RH R+     R +
Sbjct: 116 QLRDLGQTLIQIHGQHAHQLLLK--SEHQKTLLDAYAAEPELMQSMGRHYRQWHQSCRAL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELG 194
               +   E             ++ E  
Sbjct: 174 AQHQQQSQEREARRELLHYQLKELNEFA 201


>gi|190341485|gb|ACE74819.1| RecN [Citrobacter freundii]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 85/251 (33%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQNGMTVITGETGAGKSIAIDALGLCLGGR-----ADADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + F   +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  AGATRADLCARFTLKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKSEHQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
               + A L  +    R ++ +     +  + Q+      +  L  +   + ++      
Sbjct: 148 GYANE-ASL-TQEMAVRYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNEFNPQPG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|167856191|ref|ZP_02478928.1| probable ATP-binding protein NMA0346 [Haemophilus parasuis 29755]
 gi|167852680|gb|EDS23957.1| probable ATP-binding protein NMA0346 [Haemophilus parasuis 29755]
          Length = 343

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL-EAISFLSPGRGFRRASYADVT 65
          +K L +  F  +  + L F     + +G+NG+GK++IL  A S ++        S   + 
Sbjct: 2  LKKLVLKNFTVFNEVDLNFSPHLNVIIGENGMGKSHILKLAYSLIACNASAFSVSKTQMQ 61

Query: 66 RIGSPSFFSTF 76
          +  +    + F
Sbjct: 62 KNYADKLINVF 72


>gi|88861392|ref|ZP_01136022.1| putative SMC family protein [Pseudoalteromonas tunicata D2]
 gi|88816658|gb|EAR26483.1| putative SMC family protein [Pseudoalteromonas tunicata D2]
          Length = 1141

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++    ++ F  Q T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1   MRLSTIKLAGFKSFVEPTKIPFPDQMTCVVGPNGCGKSNVIDAVRWVLGESSAKNLRGDA 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-----------INDV 108
             DV   GS +    + A VE +       +     D   V   +           +N  
Sbjct: 61  MTDVIFNGSTNRKPISQASVELLFDNTQGYLAGSLVDRNQVAIKRLVTREGESFYYLNGT 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 KCRKRD 126


>gi|325685776|gb|EGD27850.1| DNA repair ATPase [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 808

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 78/221 (35%), Gaps = 25/221 (11%)

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--------------VEMINALS 209
           +L+R +  L  E        S+ + +MA L  +    R               E+ ++  
Sbjct: 589 KLLRQKQELEKELADKQKAVSARQQEMANLLAE--EKRYASSSQVAEDKQTLAEIADSFR 646

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM--SRRTLIG 267
               +Y+       +                  L ++Y + L  GR  + +  ++ +   
Sbjct: 647 RDSQDYLASLLAGEVIGRTLDLASNDRFPKMLKLAQDYLEILTGGRYREILLPAKLSKKT 706

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           P +   +V    K I +A+ S G Q+ +   + LA    I +       +L+D+   + D
Sbjct: 707 PLK---VVRKDKKKIPLAYLSRGTQEQLYFALKLAFVMQIKDKIDLP--VLIDDSFVNFD 761

Query: 328 EDKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETAKFMR 366
             +   +  ++  +    QI +    + + ++++      R
Sbjct: 762 GPRTGYIVDMLKKMSKDKQILVFTAREDLAEAVSAAPIRYR 802


>gi|323698858|ref|ZP_08110770.1| SMC domain protein [Desulfovibrio sp. ND132]
 gi|323458790|gb|EGB14655.1| SMC domain protein [Desulfovibrio desulfuricans ND132]
          Length = 569

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 74/268 (27%), Gaps = 45/268 (16%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            + + ++ L I          L F        G+ G GK+ I+ A+ FL   R       
Sbjct: 27  HHHM-LELLRIRNLALIEDAELEFSPGLNALTGETGAGKSFIMRAVDFLMGER-----MD 80

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
             + R G+    +  A     EG A I  +L     RS   + +ND +       +   +
Sbjct: 81  KKLVRPGAEKA-TVEALFVLPEGEAVIRRELSAETGRS--RVYVNDALSSQPTIRDMGAQ 137

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           +        +        +   LD  +                              D S
Sbjct: 138 LVIHTSQHGQQKLLSPAFQAEILDSFL-----------------------------PDPS 168

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
             +    ++A L   +   R      LS    +  ++  F  ++                
Sbjct: 169 LLAERNDRLAVLNDVLERKR-----RLSEKFDDLQKQREF--LEYQKKEIESVDPQPDEE 221

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
              EE  K L D  +     +  L   H
Sbjct: 222 DDLEERKKILKDRERAGECLQNALDILH 249


>gi|303389851|ref|XP_003073157.1| Rad18-like recombination and DNA repair protein [Encephalitozoon
           intestinalis ATCC 50506]
 gi|303302302|gb|ADM11797.1| Rad18-like recombination and DNA repair protein [Encephalitozoon
           intestinalis ATCC 50506]
          Length = 980

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + + +F  +  L +      TI  G NG GK+ I+ AI  +   R +   R + + D
Sbjct: 10  IASIELIKFMCHDHLLINLRKPLTIVTGCNGSGKSAIMVAIGLVLGQRAYNLERGSCFRD 69

Query: 64  VTRIGSPSFFSTFARVEGMEGLAD----ISIKLETRDD-RSVRCLQINDVV 109
           + + G  +       +E   G        +I +E R   +S     +N   
Sbjct: 70  MIKSGESNA-VVRVVLENHRGFKREFFGGTIIIEKRIGLKSATSSIVNGER 119


>gi|262379994|ref|ZP_06073149.1| DNA repair protein RecN [Acinetobacter radioresistens SH164]
 gi|262298188|gb|EEY86102.1| DNA repair protein RecN [Acinetobacter radioresistens SH164]
          Length = 557

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 98/284 (34%), Gaps = 42/284 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +  L +  F     L L  +    +  G+ G GK+ +L+A   LS   G R   
Sbjct: 1   MDAFM-LTHLTLINFALADHLALDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT-- 54

Query: 61  YADVTRIGS----------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
             +  R G+                 + + +   +    G   +   +            
Sbjct: 55  DTNYVRYGTDKADITAVFSYQPDSPEAGWLSAHELNDESGEIHLRRVIFATGRSK---AW 111

Query: 105 INDVV--IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMI 160
           IN     +  + E+ + L   +   S  ++        R++LDR    +    + R    
Sbjct: 112 INGRPSSLSELKEIGRLLVQLYSQHSQQQLLE--PPYPRKWLDRYSNFYNEAQQVRDAYS 169

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
            +++ +R     L          S++E Q+ EL   + I   E+         E+ +  +
Sbjct: 170 QWQKNIRQHQAALEAQASRLQRISTLELQLEELEDIVAIHYKEI-------EQEFDRLSH 222

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
             HI       L+   D++   L +E +  +   R++++ + R+
Sbjct: 223 HEHIMQDCAYSLNV-LDEAESNLSQELSSVI---RRLETHAGRS 262


>gi|262382076|ref|ZP_06075214.1| DNA repair protein RecN [Bacteroides sp. 2_1_33B]
 gi|262297253|gb|EEY85183.1| DNA repair protein RecN [Bacteroides sp. 2_1_33B]
          Length = 554

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 76/205 (37%), Gaps = 21/205 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F    +L + FD   ++  G+ G GK+ IL A+S +    + G+  ++ S  
Sbjct: 2   LKSLFIQNFVLIDNLDIRFDKGFSVITGETGAGKSIILGALSLVLGQRADGKSIKKGSDK 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADIS-------IKLETRDDRSVRCLQINDVVIR--VV 113
            V       F  +  ++E      D+        ++ E       R   +ND  +   ++
Sbjct: 62  CVI---EAVFDVSKYQLEPFFLSNDLEYDADSCILRRELYASGKSRAF-VNDSPVSLTIL 117

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRNR 171
            EL    R+  +      +  G +  + + +D M     +   +++    ++ L R    
Sbjct: 118 KELGS--RLIDIHSQHQNLLLGDNRFQLKVIDVMAENEILLILYKKEFTRYQALRRELKD 175

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVK 196
           L  +          I  Q+ +L   
Sbjct: 176 LRDKAAQSKQEEDYIRFQLEQLDEA 200


>gi|291613929|ref|YP_003524086.1| chromosome segregation protein SMC [Sideroxydans lithotrophicus
           ES-1]
 gi|291584041|gb|ADE11699.1| chromosome segregation protein SMC [Sideroxydans lithotrophicus
           ES-1]
          Length = 1177

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 107/284 (37%), Gaps = 41/284 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++     +    Q    VG NG GK+N+++A+ ++   S     R  S
Sbjct: 1   MRLAHIKLAGFKSFVDPTHIALPGQLVGIVGPNGCGKSNVIDALRWVLGESRASALRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGM-EGLADISIKLETRDDRSVRCLQIND 107
             DV   G+ +            F ++  +V G     A+ISIK   + D       IN+
Sbjct: 61  MQDVIFNGAGTRKPVARASVELVFDNSLGKVGGQWATYAEISIKRVLQRD-GDSSYYINN 119

Query: 108 VVIRVVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
             +R  D  +  L       +          RI      E R FL+        ++R R 
Sbjct: 120 QSVRRKDITDIFLGTGVGARAYAIIEQGMISRIIEAKPEELRVFLEEAAG--VSKYRDRR 177

Query: 160 IDFE-RLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSSLIMEYV 216
            + E RL   R+ LL      S     ++ Q+  LG   ++     E + A      + +
Sbjct: 178 RETELRLGDTRDNLLRV----SDILQELDKQLVHLGGQAEVAKTYRE-LEARRETTQKLL 232

Query: 217 ---QKENFPHIKLSLTGFLDGKFDQSFCALKE--EYAKKLFDGR 255
               K+     ++ L+  ++   ++    + +  E   +L   R
Sbjct: 233 WLVNKQEAETRRVRLSQQVEKTKNELEAEIAKLREVEARLETAR 276



 Score = 36.0 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  +I   S GE+ +  + +  +  +L       AP  +LDE+ A LD+     L ++
Sbjct: 1060 GKKNASIHLLSGGEKALTAIALVFSLFQL-----NPAPFCVLDEVDAPLDDTNTERLCKL 1114

Query: 338  VTDIG 342
            +  + 
Sbjct: 1115 IQKMS 1119


>gi|190341487|gb|ACE74820.1| RecN [Citrobacter sp. NZ3872_90]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 85/251 (33%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----ADADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             +      + F+  +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  TDATRADLCARFSLKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRTRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKSEHQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
               ++     +   AR  + +     +  + Q+      +  L  +   + ++      
Sbjct: 148 GYANEVTL--TQEMAARYRLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNEFNPQAG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|284929641|ref|YP_003422163.1| DNA replication and repair protein RecN [cyanobacterium UCYN-A]
 gi|284810085|gb|ADB95782.1| DNA replication and repair protein RecN [cyanobacterium UCYN-A]
          Length = 586

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 46/116 (39%), Gaps = 9/116 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F    +L + F +   +  G+ G GK+ +L+AI  +  GR         + R
Sbjct: 2   LSLLQIKNFALIDNLTVTFGSGLNVLTGETGAGKSIVLDAIDIVLGGR-----INQRLIR 56

Query: 67  IGSPS-FFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDELNK 118
             + + F     +V         + K++   ++ V   R + ++   IR    +N 
Sbjct: 57  NKTQNVFIKATFQVNSEVLKLLQTHKIDYPKNKQVIFSREISLSGKAIRSRFRING 112


>gi|161502220|ref|YP_001569332.1| recombination and repair protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863567|gb|ABX20190.1| hypothetical protein SARI_00244 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              P+        +  EG   +  ++ + D RS   +    V +  
Sbjct: 57  TGATRADLCARFSLKDTPAALRWLEENQLEEGRECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLMR 167
           + EL + L       +  ++      +++  LD       +  +   H +      R + 
Sbjct: 117 LRELGQLLIQIHGQHAHQQLTK--PEQQKSLLDSYANESALAQLMAAHYQLWHQSCRDLA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
              +   E    +        Q+ EL
Sbjct: 175 HHQQQSQERAARAELLQY---QLKEL 197


>gi|167009781|ref|ZP_02274712.1| IMP dehydrogenase/GMP reductase [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367512|ref|ZP_04983538.1| ATP binding protein [Francisella tularensis subsp. holarctica 257]
 gi|134253328|gb|EBA52422.1| ATP binding protein [Francisella tularensis subsp. holarctica 257]
          Length = 180

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 47/136 (34%), Gaps = 8/136 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I+ +R+   L +    +  I  G N  GK+N+ +A+  LS        +   V  
Sbjct: 2   LKILAINHYRSLFDLVIPL-KKLNIITGVNASGKSNLYKALRLLSET------AEGGVIH 54

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +           G E ++   IK E     + +   +  + +   D+L  +       
Sbjct: 55  SLAKEGGLNTTFWAGPEKISRQMIKGEVAIQGNSKQN-VARLRLGFADDLFGYSISLGYP 113

Query: 127 PSMDRIFSGLSMERRR 142
                 FS     +R 
Sbjct: 114 EPSLSAFSLDPEIKRE 129


>gi|109094525|ref|XP_001109647.1| PREDICTED: structural maintenance of chromosomes protein 1B-like
          isoform 1 [Macaca mulatta]
          Length = 1234

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3  HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKTINLRVKNIQ 62

Query: 63 DVTR 66
          ++  
Sbjct: 63 ELIH 66


>gi|87120233|ref|ZP_01076128.1| DNA repair protein RecN [Marinomonas sp. MED121]
 gi|86164336|gb|EAQ65606.1| DNA repair protein RecN [Marinomonas sp. MED121]
          Length = 561

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 60/212 (28%), Gaps = 31/212 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I  F    SL L      T+  G+ G GK+ +++A+S     R     + + V R
Sbjct: 2   LTSIAIKNFAIVESLELELKQGMTVISGETGAGKSIMVDALSLCLGAR-----TDSRVVR 56

Query: 67  IGSPSF----------------FSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVV 109
            G                    +     +E      D    L     +  R    IN   
Sbjct: 57  HGENKADISATFDIQAYPEVINWLEEHDLETGASDHDQHCILRRVVTKEGRSKSYINGRP 116

Query: 110 IRVVDELNKHLRISWLV--PSMDRIFSGLSMERRRFLDRM-----VFAIDPRHRRRMIDF 162
             + D      ++  +        +    +   R  +D       +     +  +     
Sbjct: 117 CSLTDLKFVSSQLINIHGQHEHQSLLKKSAQ--RLQVDEFGKLTNLAHKVKQAYQDWRAL 174

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           +  +  R    ++        S  + +M +L 
Sbjct: 175 KEELAERQNRSSDQDARIQLLSYQQQEMDQLA 206


>gi|294626366|ref|ZP_06704968.1| Chromosome segregation protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599367|gb|EFF43502.1| Chromosome segregation protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1167

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 88/282 (31%), Gaps = 30/282 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             DV   GS +    + A VE +   +D +I  E      +   ++          LN  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDHTISGEFASFNEISVKRLVSRDGHSAYYLNGT 120

Query: 120 LRISWLVPSMDRIFSGLSMERRRFL---DRMVFAI-------DPRHRRRMIDFERLMRGR 169
                    +  +F G  +  R +      M+  I          +        +    R
Sbjct: 121 KCRRR---DITDLFLGTGLGPRSYSIIEQGMISQIIEARPEDLRVYLEEAAGISKYKERR 177

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
               T              ++++L  +I       +  L     +  Q +     +    
Sbjct: 178 KETETRIRHTRENLD----RLSDLREEITKQ----LAHLQRQARQAEQYQALQEER---- 225

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              D ++        +   + L +    +    + LI   R 
Sbjct: 226 RIKDAEWKALEYRGLDGRLQGLREKLNQEETRLQQLIAEQRD 267


>gi|259418546|ref|ZP_05742463.1| DNA repair protein RecN [Silicibacter sp. TrichCH4B]
 gi|259344768|gb|EEW56622.1| DNA repair protein RecN [Silicibacter sp. TrichCH4B]
          Length = 549

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A + R
Sbjct: 2  LRALDIRDLLIIDHLELTFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAALVR 56

Query: 67 IGSPSFFSTFARVEGMEGLA 86
           G+       A  +  EG A
Sbjct: 57 QGAEQG-EVVAEFDLPEGHA 75


>gi|148550945|ref|YP_001260375.1| hypothetical protein Swit_4992 [Sphingomonas wittichii RW1]
 gi|148503356|gb|ABQ71608.1| hypothetical protein Swit_4992 [Sphingomonas wittichii RW1]
          Length = 881

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 72/212 (33%), Gaps = 31/212 (14%)

Query: 164 RLMRGRNRLLTEGYFDSSW-CSSIEAQMAE------LGVKINIAR------VEMINALSS 210
           +L   +  L+     D      + +A++ +         K+   R           AL+ 
Sbjct: 508 KLADEKAELIKASDADERLKLETEKAELEDSKILNANAAKLITRRDLMVTDAAYAKALTL 567

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
           +    + K     +   LT  +  +FD      + ++ K     +           G  +
Sbjct: 568 VATSGITKRANELLDTHLTSAVVSQFDAERERFEIKHLKVGLARKS----------GQTK 617

Query: 271 SDLIVD--YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           ++  V+       IT    S GEQ+ + +  FL    L    T     +++D+  + LD 
Sbjct: 618 AEFEVNPQTALTKITSQILSEGEQRALALAAFLTEVAL----TDGTGPIIVDDPVSSLDR 673

Query: 329 DKRNALFRIVTDIGS--QIFMTGTDKSVFDSL 358
           ++   +   + +     Q+ +   D   F+ L
Sbjct: 674 ERSAKVADRIAEEAGKRQVVVFTHDMVFFNEL 705


>gi|325120015|emb|CBZ55568.1| DEHA2A05324p, related [Neospora caninum Liverpool]
          Length = 1420

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 86/271 (31%), Gaps = 20/271 (7%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF---RRAS 60
           ++  L +  +  Y   + + F     +    NG GK+++L A++F L         R + 
Sbjct: 52  QLLQLRLENWMAYTGPVEVNFLTGINLLAAPNGAGKSSLLCAMAFGLGYDVAHISRRGSR 111

Query: 61  YADVTRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             D  +IG  +   +        G       +L    D++V    IN         +   
Sbjct: 112 LRDFIKIGHNACSVSCVLAGRKPGEFVTTKRELRLSGDQAVSTFYINGNECGAEARIQFQ 171

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
            R+      +D +   +  ER    +      +      +   +  +      L +    
Sbjct: 172 RRMKL---QVDNLICFMPQER--VPEFATMRPEDLFMATLRAIDYDLHEAYAGLRDWEAQ 226

Query: 180 SSWCSSIEAQ----MAELGVKINIARVEM--INALSSLIMEYVQKEN--FPHIKLSLTGF 231
                 +  Q    +  L   +   R+E   +  L S   E +  E     +   ++   
Sbjct: 227 RDETEKLLTQGRADLVVLSRAVEKLRLEHEELKRLQSCEKERILCEGKILENRVAAVKAS 286

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
           L  + ++     ++E  +     RK+D   +
Sbjct: 287 LKAQ-EREKQKTEKELRRANEKVRKVDEKLK 316


>gi|322412217|gb|EFY03125.1| DNA repair protein recN [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 35/210 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMTMMLGAR-----ASTEVIR 56

Query: 67  IGS-----PSFFSTFA--------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+       FFS  A           G+    D+ I+ +   +      +IN  ++ + 
Sbjct: 57  HGANKAEIEGFFSVDANPALVAYLEASGIAMEEDLVIRRDIF-ENGRSVSRINGQMVNLA 115

Query: 114 ----------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                     D   +H +   + P + +           F D+    +   ++     ++
Sbjct: 116 TLKEVGQFLVDIHGQHDQEELMRPQLHQQILDA------FGDKAFEQLKEHYQLIFDRYK 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
            L R                  +  Q+AE+
Sbjct: 170 SLRRQVIDKQKNEKEHKDRIDMLAFQIAEI 199


>gi|300114087|ref|YP_003760662.1| chromosome segregation protein SMC [Nitrosococcus watsonii C-113]
 gi|299540024|gb|ADJ28341.1| chromosome segregation protein SMC [Nitrosococcus watsonii C-113]
          Length = 1170

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 104/330 (31%), Gaps = 52/330 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + +  F+++     L   +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKKIKLVGFKSFVDPTSLPLPSNRVAVVGPNGCGKSNIIDAVRWVMGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRC-LQIND 107
            ADV   GS S            F ++   + G     +  I ++ +  R  +    +N+
Sbjct: 61  MADVIFNGSTSRKPVGQCSVELVFDNSQGGLGGQYAAYN-EIAIKRQVSRDGQSHYFLNN 119

Query: 108 VVIRVVD------------------ELNKHLRISWLVPSMDRIFSGLSM------ERRRF 143
              R  D                  E     R+    P   R+F   +       ERRR 
Sbjct: 120 ARCRRRDITDIFLGTGLGPRSYAIIEQGMISRLIEAKPEELRVFLEEAAGISKYKERRRE 179

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
            +  +         R+ D    +  +   L      +    +++    ++  +I   R  
Sbjct: 180 TENRMSHTVDN-LNRINDLREEIERQFNTLKRQAKQAEKYQALKQLDRKIKAQIEALRWR 238

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM--DSMS 261
           ++N       E   + N    +            +   A  E+  + L+  R    +   
Sbjct: 239 VLN-------EKTCQLNQEIERQETLLEGHTADLRRVEAQLEQQGEALYQARDKTAEIQE 291

Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
                G   + L           A     +
Sbjct: 292 TYYSQGAEIARLEQQLHHGRAQRAQHQQEQ 321


>gi|297621843|ref|YP_003709980.1| putative chromosome segregation SMC protein [Waddlia chondrophila
          WSU 86-1044]
 gi|297377144|gb|ADI38974.1| putative chromosome segregation SMC protein [Waddlia chondrophila
          WSU 86-1044]
          Length = 1239

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 7  IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
          +K + I  F+++A    L F    T  VG NG GK+NI ++  ++      +  R +   
Sbjct: 10 LKKIKILGFKSFADSTVLEFHPGITAIVGPNGCGKSNISDSFRWVLGEQSAKSMRGSKMN 69

Query: 63 DVTRIGSP 70
          DV   G+ 
Sbjct: 70 DVIFAGTA 77


>gi|229817931|ref|ZP_04448213.1| hypothetical protein BIFANG_03218 [Bifidobacterium angulatum DSM
           20098]
 gi|229784535|gb|EEP20649.1| hypothetical protein BIFANG_03218 [Bifidobacterium angulatum DSM
           20098]
          Length = 587

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 73/251 (29%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----------- 55
           ++ L++         ++      T   G+ G GK+ +L AI  +S G             
Sbjct: 2   LEELSVRNLGPIRDAQIAPAPGFTAITGETGAGKSMLLSAIRLISGGAASGSRVSAGAGE 61

Query: 56  ------FRRASYADV------TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
                 F     +D+          SP+  +     E      D  + L      S R  
Sbjct: 62  AWAQGVFCVPGDSDLSGTANAVGTLSPAGKAVQYAEEAGVTPEDGELFLSRVVPASGRSR 121

Query: 104 QINDVVIRVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
            +          L      +  +    +++    + ++R FLD            ++  +
Sbjct: 122 AVLGGKTVPRSVLESVAGELITVHGQSEQLRIASAAKQREFLDMAAGDD-----AQLAAY 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
                                ++++ ++A+L  +   AR +  + L   I    Q +  P
Sbjct: 177 RHAW--------------DELTAMDERLAKLRSQEASARQQA-DYLRESIARIDQVDPQP 221

Query: 223 HIKLSLTGFLD 233
                L    D
Sbjct: 222 GEDAELKERRD 232


>gi|222153398|ref|YP_002562575.1| DNA repair protein [Streptococcus uberis 0140J]
 gi|222114211|emb|CAR42769.1| putative DNA repair protein [Streptococcus uberis 0140J]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 72/203 (35%), Gaps = 21/203 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTDVIR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+                  +     G++   D+ I+ +   + RSV  +    V +  
Sbjct: 57  HGTEKAEIEGFFSLDRKNEIKSILEKNGIDVSDDLVIRRDIFANGRSVSRINGQMVTLST 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           + E+  +L         + +            F +    ++  R++    D++ + +   
Sbjct: 117 LKEVGHYLVDIHGQHDQEELMRASHHQSILDAFGNDAFQSLKRRYQSLFNDYKLIRKRVI 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAEL 193
                          +  Q+AE+
Sbjct: 177 EKQKNEQEHRERIEMLAFQLAEI 199


>gi|167725796|ref|ZP_02409032.1| hypothetical protein BpseD_42663 [Burkholderia pseudomallei DM98]
          Length = 588

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
          +KI  + ++      +  L      ++F G NG GK+++ EA+     G   R A   + 
Sbjct: 1  MKITDIYVANVLGIRTADLRLAKPVSLFTGPNGAGKSSLQEAVRMALTGDTVRVALKKEY 60

Query: 64 --VTRIGSPSFFSTFA 77
            +   G+       A
Sbjct: 61 GSLVTEGADGGQIVVA 76


>gi|310814892|ref|YP_003962856.1| DNA repair protein RecN [Ketogulonicigenium vulgare Y25]
 gi|308753627|gb|ADO41556.1| DNA repair protein RecN [Ketogulonicigenium vulgare Y25]
          Length = 551

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I +      L L F     +  G+ G GK+ +L+A+ F+   RG      A+V R
Sbjct: 2  LRALEIRDMVIIDRLDLAFQPGLNVLTGETGAGKSILLDALGFVLGWRG-----RAEVVR 56

Query: 67 IGSPSFFST 75
           G+     T
Sbjct: 57 QGADRAEVT 65


>gi|284105049|ref|ZP_06386178.1| conserved hypothetical protein [Candidatus Poribacteria sp.
          WGA-A3]
 gi|283830172|gb|EFC34432.1| conserved hypothetical protein [Candidatus Poribacteria sp.
          WGA-A3]
          Length = 373

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          K+  + I  FR+     L F     + +G NG GK+N++
Sbjct: 3  KLNSIAIRGFRSVKEATLEFRP-LNVLIGANGAGKSNLI 40


>gi|154500960|ref|ZP_02038998.1| hypothetical protein BACCAP_04646 [Bacteroides capillosus ATCC
           29799]
 gi|150269984|gb|EDM97503.1| hypothetical protein BACCAP_04646 [Bacteroides capillosus ATCC
           29799]
          Length = 1192

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 44/125 (35%), Gaps = 13/125 (10%)

Query: 3   NRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRR 58
             + +K L I  F+++     L F    T  VG NG GK+NI +AI ++      R  R 
Sbjct: 2   PDLYLKALEIQGFKSFPDKTVLTFGEDVTAIVGPNGSGKSNISDAIRWVMGEQSTRALRG 61

Query: 59  ASYADVT-----RIGSPSFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVV 109
               DV      +     F      ++  E   D+     +              IN   
Sbjct: 62  GKMEDVIFGGTAKRKQLGFAEVSLVLDNSEHFFDLEESEVMVTRRYYRSGESEYYINRRS 121

Query: 110 IRVVD 114
           +R+ D
Sbjct: 122 VRLKD 126


>gi|330961760|gb|EGH62020.1| ATP binding protein [Pseudomonas syringae pv. maculicola str.
          ES4326]
          Length = 451

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
            +R +    + FD   TI +  NG GKT IL+A
Sbjct: 2  QNYRCFGEFEIDFDPHLTILIASNGGGKTTILDA 35


>gi|264676962|ref|YP_003276868.1| DNA repair protein RecN [Comamonas testosteroni CNB-2]
 gi|262207474|gb|ACY31572.1| DNA repair protein RecN [Comamonas testosteroni CNB-2]
          Length = 593

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 87/285 (30%), Gaps = 42/285 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + + +F    SL L +    T+  G+ G GK+ +L+A+  +   R     + A V
Sbjct: 1   MALKRIVLRDFVIVQSLDLDWQTGFTVLTGETGAGKSIMLDALQLVLGAR-----ADAQV 55

Query: 65  TRIGSPSFFS---------TFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI---- 110
            R G P                 +E      +  + L    D   R    IN        
Sbjct: 56  VREGCPQADICAEFDCPPHLHEWLEESGFAQEQDLLLRRVIDSLGRSRAWINGSPATATQ 115

Query: 111 ------RVVDELNKHLRISWLVPSMDRIF------SGLSMERRRFLDRMVFAIDPRHRRR 158
                 +++D   +H   S   P   R           +  +  +LD           + 
Sbjct: 116 LRHLGDQLIDIHGQHAWQSLTRPDAARAMLDTYGGIETAQLKSLWLDW--RQNHQALEQA 173

Query: 159 MIDFERLMRGRNRL------LTEGYFDSSWCSSIEAQMAELGVK--INIARVEMINALSS 210
           +   + L R R RL      L +    +     + AQ   L     +  +    +  L  
Sbjct: 174 LSAQDNLQRERERLQWQISELDKLSPRAEEWDELNAQHTRLSHAQTLMDSAQSCLQLLED 233

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
                       H  L     L+ +F QS   +      +L D R
Sbjct: 234 DDSGAATPLGRAHHLLQDQEHLEPEF-QSIADVLGSCVAQLHDAR 277


>gi|255713132|ref|XP_002552848.1| KLTH0D02816p [Lachancea thermotolerans]
 gi|238934228|emb|CAR22410.1| KLTH0D02816p [Lachancea thermotolerans]
          Length = 1094

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 41/130 (31%), Gaps = 16/130 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  L +  F  YA           + +G NG GK+  + A+     G+     R     D
Sbjct: 47  IVTLRLENFVTYALTEFHMSPSLNMIIGPNGSGKSTFVCAVCLGLAGKPEYIGRSTKIED 106

Query: 64  VTRIGSPSFFSTFA-----RVEGMEGLADISIKLET--RDDRSVRCLQINDVVI------ 110
             + G                E     +D + K+      +R      +N   +      
Sbjct: 107 YIKNGEDRSVIEVTLKRDPEAEDRYVASDGTTKVTRVLHRNRKASEYFLNGQSVTESAVK 166

Query: 111 RVVDELNKHL 120
           R+V ELN  L
Sbjct: 167 RLVSELNIQL 176


>gi|153869287|ref|ZP_01998935.1| ATPase [Beggiatoa sp. PS]
 gi|152074189|gb|EDN71071.1| ATPase [Beggiatoa sp. PS]
          Length = 181

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE 45
          IK + I  +++   L+L    + T+ +G+NG GK+NILE
Sbjct: 2  IKEIRIENYKSIQKLKLELG-RVTVLIGENGCGKSNILE 39


>gi|33593489|ref|NP_881133.1| DNA repair protein [Bordetella pertussis Tohama I]
 gi|33572845|emb|CAE42778.1| DNA repair protein [Bordetella pertussis Tohama I]
 gi|332382897|gb|AEE67744.1| DNA repair protein [Bordetella pertussis CS]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 25/198 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F       L F    T+F G+ G GK+ +++A++     RG      A + R
Sbjct: 2   LRTLHIRDFVIVEQTELHFGDGFTVFSGETGAGKSILIDALALTLGERG-----DASMLR 56

Query: 67  IGSPSFFSTFA---------RVEGMEGLADISIKLETRDDRSVR-CLQINDVV--IRVVD 114
            G+     T            +   E  +   + L    D   R    IN +   I  + 
Sbjct: 57  EGAARADITAVFDAPPALRDWLAERELDSGDELALRRVIDSQGRSRAYINGMPATIAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNRL 172
           EL   L       +   +       +R  LD      +      +    +  L R     
Sbjct: 117 ELGDGLVDIHGQHAHQSLMR--PEAQRDLLDAHGGHAELRQTVAQAWKQWRALARQ---- 170

Query: 173 LTEGYFDSSWCSSIEAQM 190
           L     D+   ++   ++
Sbjct: 171 LDTAEQDAEALAAERDRL 188


>gi|91977849|ref|YP_570508.1| DNA repair protein RecN [Rhodopseudomonas palustris BisB5]
 gi|91684305|gb|ABE40607.1| DNA repair protein RecN [Rhodopseudomonas palustris BisB5]
          Length = 561

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L + F     +  G+ G GK+ +L+A +    GRG      A + R
Sbjct: 2  LSRLSIRDIVLIERLDIEFSRGLAVLTGETGAGKSILLDAFALALGGRG-----DAALVR 56

Query: 67 IGSPSF 72
           G+   
Sbjct: 57 HGAEHG 62


>gi|217967435|ref|YP_002352941.1| DNA repair protein RecN [Dictyoglomus turgidum DSM 6724]
 gi|217336534|gb|ACK42327.1| DNA repair protein RecN [Dictyoglomus turgidum DSM 6724]
          Length = 580

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L + +F     + L F     +  G+ G GK+ +++A++FL    G R ++   + R
Sbjct: 2   LLALRVKDFAIIDEITLDFHDGLNVITGETGAGKSLLVDALAFLL---GERASTD--IIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            GS      + F+    VE +    +I  + +     S    +      RV  EL
Sbjct: 57  SGSNRSVVEAMFTMNEEVERLLDEWEIPKEKDGTLLVSRELNKSGRSKCRVNGEL 111


>gi|71020611|ref|XP_760536.1| hypothetical protein UM04389.1 [Ustilago maydis 521]
 gi|46100334|gb|EAK85567.1| hypothetical protein UM04389.1 [Ustilago maydis 521]
          Length = 1218

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK L I  F++Y        F   H + VG NG GK+N   AI F
Sbjct: 1  MYIKTLTIQGFKSYRDQTAVEPFSPHHNVVVGRNGSGKSNFFSAIRF 47



 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 71/196 (36%), Gaps = 13/196 (6%)

Query: 157  RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
            + +  +    + R++LL           SI+    EL   ++  + E I      + +Y 
Sbjct: 987  KAVEQYNSFTKQRDQLLERRGELEQSAESIQ----ELIDVLDQRKDEAIERTFKQVSKYF 1042

Query: 217  QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
            + E F  +  +  G L  +               + D  + D     +  G         
Sbjct: 1043 E-EVFEKLVPAGRGRLIMQRRADIAGGGSGGGGGVADESEDDGAPVESYTGVSIKVSFNS 1101

Query: 277  YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
              D+ + I   S G++ +V +    A           AP  L DEI A+LD   R A+  
Sbjct: 1102 KLDEGLRIQQLSGGQKSLVALATVFA-----IQKCDPAPFYLFDEIDANLDALYRTAVAN 1156

Query: 337  IVTDI--GSQIFMTGT 350
            ++ ++   +Q F+T T
Sbjct: 1157 MIKELAENAQ-FITTT 1171


>gi|82701255|ref|YP_410821.1| ATP-dependent OLD family endonuclease [Nitrosospira multiformis
          ATCC 25196]
 gi|82409320|gb|ABB73429.1| ATP-dependent endonuclease of the OLD family-like protein
          [Nitrosospira multiformis ATCC 25196]
          Length = 429

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          K + +  +R + ++ + F  + T+  G NG GKT +L
Sbjct: 3  KKIVLHGWRQFRNVDIDFHPRLTVLTGANGAGKTTLL 39


>gi|186682009|ref|YP_001865205.1| exonuclease SbcC [Nostoc punctiforme PCC 73102]
 gi|186464461|gb|ACC80262.1| exonuclease SbcC [Nostoc punctiforme PCC 73102]
          Length = 1008

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 9   FLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            L +  F +Y    L F   HT    G NG GK+++LEAI++   G   R  +  DV   
Sbjct: 5   QLILKNFLSYRDATLDFRGLHTACISGSNGAGKSSLLEAITWAIWGES-RATAEDDVIYS 63

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
           G+      F      +      I+   R   SV   QI
Sbjct: 64  GAKEVRVDFTFQSNQQKYR--VIRTRIRGGTSVLEFQI 99


>gi|301310649|ref|ZP_07216588.1| DNA repair protein RecN [Bacteroides sp. 20_3]
 gi|300832223|gb|EFK62854.1| DNA repair protein RecN [Bacteroides sp. 20_3]
          Length = 554

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 76/205 (37%), Gaps = 21/205 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F    +L + FD   ++  G+ G GK+ IL A+S +    + G+  ++ S  
Sbjct: 2   LKSLFIQNFVLIDNLDIRFDKGFSVITGETGAGKSIILGALSLVLGQRADGKSIKKGSDK 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADIS-------IKLETRDDRSVRCLQINDVVIR--VV 113
            V       F  +  ++E      D+        ++ E       R   +ND  +   ++
Sbjct: 62  CVI---EAVFDVSKYQLEPFFLSNDLEYDADSCILRRELYASGKSRAF-VNDSPVSLTIL 117

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRNR 171
            EL    R+  +      +  G +  + + +D M     +   +++    ++ L R    
Sbjct: 118 KELGS--RLIDIHSQHQNLLLGDNRFQLKVIDVMAENEILLILYKKEFTRYQALRRELKD 175

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVK 196
           L  +          I  Q+ +L   
Sbjct: 176 LRDKAAQSKQEEDYIRFQLEQLDEA 200


>gi|295086014|emb|CBK67537.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
          Length = 717

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + IK + I  F++Y  S  + F     + +G+ G GK+ +  A  ++  G+
Sbjct: 1  MIIKNITIENFQSYYESQTMEFSKGLNLIIGNGGKGKSKLFNAFYWVLFGK 51


>gi|187920074|ref|YP_001889105.1| SMC domain-containing protein [Burkholderia phytofirmans PsJN]
 gi|187718512|gb|ACD19735.1| SMC domain protein [Burkholderia phytofirmans PsJN]
          Length = 874

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 77/202 (38%), Gaps = 6/202 (2%)

Query: 170 NRLLTEGYFDSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
           +  L  G  +      +++  Q+   G      R+  + A          + +     LS
Sbjct: 668 SAELARGEQNERQVKIAALRGQLETAGASGLGERLAAVQAKVEQATRRKDELSLRASALS 727

Query: 228 L-TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           L    L  + D +   L+    ++L    K         +G   S   +D   +A T+  
Sbjct: 728 LLDEVLVDERDAAVAQLRAPLTERLGHYLKRIFPQSTIALGDDLSPATLDRFGRADTLEA 787

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQ 344
            S G ++ + +   LA+A L+   +G   +L+LD+ + H D  +R+A+ R +       Q
Sbjct: 788 LSFGTREQLGILTRLAYADLLK-ASGRPTLLMLDDAAVHTDAARRDAIKRALIDAATRHQ 846

Query: 345 IFMTGTDKSVFDSLNETAKFMR 366
           I +      ++D L    + + 
Sbjct: 847 ILVFTCHPELWDDLGVRQRAIE 868



 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +K++ + I EF+ +    +         +FVG N  GK+ I EA+  +   R ++ +   
Sbjct: 1  MKLQSIAIQEFKQFTGKLVIDDLQPGLNLFVGPNEAGKSTIAEAVRAVFLER-YKASHLK 59

Query: 63 DVTRIGSPSF 72
          D+   G  S 
Sbjct: 60 DLLPWGKASG 69


>gi|289649241|ref|ZP_06480584.1| hypothetical protein Psyrpa2_16069 [Pseudomonas syringae pv.
          aesculi str. 2250]
          Length = 535

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYAD 63
          + I+ + +  FR     R+   +  +IFVG N  GKT+   A+   +     R       
Sbjct: 1  MHIETVWVRNFRRLKDTRIDLASDISIFVGANNSGKTSAAHALQLFTSASKDRFTLHD-- 58

Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLET 94
               S  +    A  EG +G+   +I L+ 
Sbjct: 59 ---FSSECWDVINAFGEGADGVELPTISLDI 86


>gi|289164297|ref|YP_003454435.1| hypothetical protein LLO_0950 [Legionella longbeachae NSW150]
 gi|288857470|emb|CBJ11298.1| Conserved hypothetical protein [Legionella longbeachae NSW150]
          Length = 894

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 74/209 (35%), Gaps = 23/209 (11%)

Query: 173 LTEGYFDSSWCSSIEAQMAEL--------GVKINIARVE---MINALSSLIMEYVQKENF 221
           L +   D+     ++ Q+A L         + I + R+E   ++  L+  +         
Sbjct: 521 LEKECVDNERFERLQEQLANLKDRKRFAADIDIFLQRLEDSTLLANLNKCLAALDTTNTS 580

Query: 222 PHI-KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
             I +L  T F +         + E     +    +  +    TL+G +     +   + 
Sbjct: 581 KKITQLRKTLFTEDLKKNILDEINELDLTHIPFTVESRTDRGTTLVGVNL-KTTIPVSNS 639

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
            +     S GEQ+ + +  FLA  +      G    +++D+  + LD  +   + + +T 
Sbjct: 640 DV----LSEGEQRALALSCFLAEVKREPIQHG----IIIDDPVSSLDHLRLRRVAQRLTK 691

Query: 341 --IGSQIFMTGTDKSVFDSLNETAKFMRI 367
                Q+ +   +   +  + + A    I
Sbjct: 692 EATNRQVVIFTHNILFYSEIKKYAAKYSI 720


>gi|212634785|ref|YP_002311310.1| SMC family protein [Shewanella piezotolerans WP3]
 gi|212556269|gb|ACJ28723.1| SMC family protein [Shewanella piezotolerans WP3]
          Length = 1141

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 81/225 (36%), Gaps = 32/225 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++    ++      +  +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPLPNPLSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
            ADV   GS +            F +   R+ G      +I++K +   D        N 
Sbjct: 61  MADVIFNGSTARRPVSVAGVELLFDNQDNRLAGQYASYQEIAVKRQVSRDGDSSYFLNNQ 120

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R   ++      + L P    I               E R F++        R++ R
Sbjct: 121 KCRRK--DITDLFMGTGLGPRSYAIIEQGTISRLIESKPQELRVFIEEAAG--ISRYKER 176

Query: 159 MIDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV 202
             +   R+   R  L   G   S     +E  +AE        R 
Sbjct: 177 RRETENRIRHTRENLSRLGDIRSELHKQLER-LAEQAQTAKQYRE 220



 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 76/232 (32%), Gaps = 47/232 (20%)

Query: 157  RRMIDFERLMRGRNRLLTEGYFDSSWCSS------IEAQMAEL-GVKINIARVEMINALS 209
              +      ++ R   L  G  DS +         +E  +++L   +  + R + +  L 
Sbjct: 873  EDLTQTMSALKLRREGLK-GQIDSQFSLITEQGIDVEQVLSKLDASRNTLWRQKELERLR 931

Query: 210  SLIMEYVQKENFPHIKL-------SLTGFLDGKFDQSFCALKEEYAKKLFD--GRKMDSM 260
            + I            +        S     D   + +  +L+E   K   +   R  D+ 
Sbjct: 932  ARIAHLGAINLAAIEEFEQQNQRKSYLDSQDEDLNSALGSLEEAIRKIDTETKSRFKDTF 991

Query: 261  SRRT---------LIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVL 296
             +           + G   + L +   D               K  TI   S GE+ +  
Sbjct: 992  DKVNKDLGILFPKVFGGGSAYLALTDDDLLETGVTIMARPPGKKNSTIQLLSGGEKALTA 1051

Query: 297  VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FM 347
            + +  A  RL       AP  +LDE+ A LD+       R+V ++   + F+
Sbjct: 1052 LSLVFAIFRL-----NPAPFCMLDEVDAPLDDANVERFCRLVKEMSQSVQFI 1098


>gi|254374525|ref|ZP_04990006.1| hypothetical protein FTDG_00696 [Francisella novicida GA99-3548]
 gi|151572244|gb|EDN37898.1| hypothetical protein FTDG_00696 [Francisella novicida GA99-3548]
          Length = 388

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 8/136 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I+ +R+   L +    +  I  G N  GK+N+ +A+  L+        +   V  
Sbjct: 2   LKILAINHYRSLFDLVIPL-KKLNIITGVNASGKSNLYKALRLLAET------AEGGVIH 54

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +           G E ++   IK E     + +   +  + +   D+L  +       
Sbjct: 55  SLAKEGGLNTTFWAGPEKISRQMIKGEVAIQGNSKQN-VARLRLGFADDLFGYSISLGYP 113

Query: 127 PSMDRIFSGLSMERRR 142
                 FS     +R 
Sbjct: 114 EPSLSAFSLDPEIKRE 129


>gi|257077012|ref|ZP_05571373.1| chromosome partition protein smc [Ferroplasma acidarmanus fer1]
          Length = 1156

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 7/119 (5%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEA-ISFLSP--GRGFRRAS 60
           + +  + +  F++Y     +  +   T+ +G NG GK+NI ++ +  L     +  R   
Sbjct: 1   MIVDSIEMENFKSYGDKQSIKINKGFTVIIGPNGSGKSNIGDSMLFVLGIRANKTVRVDK 60

Query: 61  YADVTRIGSP---SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
             D      P     +     +        I  +L            IND      D L
Sbjct: 61  LEDFIHKTDPPKKHCYVVLNVISNENNRYSIKRELVYNHGEYKSNYYINDKRASRTDVL 119


>gi|77456457|ref|YP_345962.1| hypothetical protein Pfl01_0229 [Pseudomonas fluorescens Pf0-1]
 gi|77380460|gb|ABA71973.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 386

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L ++ +R+   L +    +  +  G NG GK+N+  A+  L+            + R
Sbjct: 2   LKTLAVANYRSINKLVIPLG-RLNLITGPNGSGKSNLYRALRLLAETAQ--GGVVNALAR 58

Query: 67  IG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
            G    +F++    +     + +  + +++   + V+ L++
Sbjct: 59  EGGLDSTFWAGPETISRR--MRNGEVPIQSTVRQGVKRLRL 97


>gi|326782157|ref|YP_004322558.1| recombination endonuclease subunit [Prochlorococcus phage P-HM1]
 gi|310004364|gb|ADO98757.1| recombination endonuclease subunit [Prochlorococcus phage P-HM1]
          Length = 573

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 81/272 (29%), Gaps = 42/272 (15%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR--IGSPSFFST 75
           ++ ++L      T+ VG NG GK+  L+A+ +    + FR+ S   +        +    
Sbjct: 19  FSEIQLDTSPA-TLIVGANGAGKSTFLDAMCYALFNKPFRKISKGQLVNAVNEKDTMVEL 77

Query: 76  FARVEGMEGLADISIKLET------RDDRSVRCLQINDVVIRVVDELNK---------HL 120
              +   E +    IK          +       Q+          L            L
Sbjct: 78  EFSIGSREYMVRRGIKPSLFEIYLNSEKLKEEASQLEQQKYLEQSILGLNYKSFTQVVVL 137

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
             S  VP M          RR  ++ ++        R       +++ R + + E   + 
Sbjct: 138 GSSCFVPFMQL----NPPNRREVIEDLLD------IRIFSTMNGILKERVKGIKENIREV 187

Query: 181 SW-----------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
            +             ++   + E        R   I  +   I +  +  +     L L+
Sbjct: 188 EYQFELAKNKVETQQALIEHLKEQSNANTARRKTEIATIEKEITDITKDVDG---DLKLS 244

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
              + K ++      +    ++++ R  D   
Sbjct: 245 KSYEDKLEKFDSVDTDLSQLRIYENRFKDKQK 276


>gi|260778340|ref|ZP_05887233.1| putative RecF protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606353|gb|EEX32638.1| putative RecF protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 387

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  L I+ +R+  +L +    +  +  G NG GK+N+ +A+  L+
Sbjct: 2  ITALAINNYRSILNLVIPLG-RLNVITGANGTGKSNLYKALRLLA 45


>gi|14590094|ref|NP_142158.1| hypothetical protein PH0155 [Pyrococcus horikoshii OT3]
 gi|3256541|dbj|BAA29224.1| 317aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 317

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I  + +  FR    L L    +  + VG N  GK+ +LEA+S  
Sbjct: 2  IDSIRVEGFRGLKELELSSLRRINVIVGRNNSGKSTLLEALSLF 45


>gi|302871625|ref|YP_003840261.1| ATP-dependent OLD family endonuclease [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574484|gb|ADL42275.1| ATP-dependent OLD family endonuclease [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 648

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 82/224 (36%), Gaps = 41/224 (18%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-------- 55
           + I  + I  ++++  S  ++ D +   F+G N  GK+ IL+AI    P           
Sbjct: 1   MYISKMRIRNYKSFLDSGEIMLDEKIFAFIGQNNTGKSTILDAIKIFFPNYKKQVDRKDI 60

Query: 56  FRRASYADVTRI---GSPSFFSTFARVEGMEGL-------------ADISIKLETRDDRS 99
            R  +   +  +   G  SFF      E    +               + + +E   +++
Sbjct: 61  HRGINDNIIIEMWLGGVESFFENTRTDEVDRQVEKLLRKVTDNSLYIKLVLNVEDSTNKN 120

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH---- 155
           +R     D        L K L    ++P++       + +R+ +L  ++  +D  +    
Sbjct: 121 IRKYFDKDEEEIKEATLKKLLPELVVIPAIRDPEKESTADRKSYLRSLIDILDSEYETDI 180

Query: 156 ------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
                   + +++ +L    N +LT+       C S+  ++ E 
Sbjct: 181 LIKDEGAEKRVNYNQL----NNILTKEARKR--CESLSQKITEY 218


>gi|288800444|ref|ZP_06405902.1| DNA repair protein RecN [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332657|gb|EFC71137.1| DNA repair protein RecN [Prevotella sp. oral taxon 299 str. F0039]
          Length = 558

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 62/183 (33%), Gaps = 20/183 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F     L + F +  ++  G+ G GK+ I+ A+  L    +  +  +     
Sbjct: 2   LKHLYIKNFTLIDELNIDFFSGFSVITGETGAGKSIIVGAVGLLKGNRADIKSIKANRDK 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADIS-------IKLETRDDRSVRCLQINDVVIRVVDE 115
            +      +F  +   ++ +    DI        I+ E  ++   R   IND+ + +   
Sbjct: 62  CIV---EATFNISAYDMKNLFDEHDIDYDENECIIRRELNNNGKSRAF-INDMPVSLTTM 117

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR---HRRRMIDFERLMRGRNRL 172
                 +  +      +       +   +D ++     +   + +    +    +    L
Sbjct: 118 KAIGECLIDVHSQHQNLLLNQEDFQLNIID-IIAQSQKQLALYTQAYNHYREANKQ-LAL 175

Query: 173 LTE 175
           L E
Sbjct: 176 LKE 178


>gi|323342203|ref|ZP_08082435.1| hypothetical protein HMPREF0357_10615 [Erysipelothrix
          rhusiopathiae ATCC 19414]
 gi|322463315|gb|EFY08509.1| hypothetical protein HMPREF0357_10615 [Erysipelothrix
          rhusiopathiae ATCC 19414]
          Length = 441

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 9  FLNISEFRNYASLRLVFDAQ------HTIFVGDNGVGKTNILEAISFL 50
           L +  FR Y  LR+ F  +           GDN  GK+++L + +FL
Sbjct: 4  SLTLKNFRCYRDLRVEFKNKRGTVKPRVYIYGDNASGKSSLLLSFAFL 51


>gi|163731815|ref|ZP_02139262.1| hypothetical protein RLO149_20964 [Roseobacter litoralis Och 149]
 gi|161395269|gb|EDQ19591.1| hypothetical protein RLO149_20964 [Roseobacter litoralis Och 149]
          Length = 725

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63
          +KI    +  +R    + LV D Q  I VG N  GKT+ + A+  FL      R      
Sbjct: 1  MKISSFYLKNYRRLIDVELVLDDQKAILVGANNSGKTSGIGALYTFLMRPENLR------ 54

Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIK 91
            R  S   + + + +    G  +IS +
Sbjct: 55 -VRDVSKQHWQSISSIGVQLGADEISTE 81


>gi|156838385|ref|XP_001642899.1| hypothetical protein Kpol_392p8 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113477|gb|EDO15041.1| hypothetical protein Kpol_392p8 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1427

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 19/118 (16%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS- 60
           R+ I  L + +F++YA  ++   F +  +  VG NG GK+N+++++ F+    GFR +  
Sbjct: 153 RLCIDKLVLHDFKSYAGTQVVGPFHSSFSAVVGPNGSGKSNVIDSMLFVF---GFRASKM 209

Query: 61  ----YADVTRIGSPSF-----FSTFARVEGMEGLADISIKLETRDDR---SVRCLQIN 106
                +D+    S +F      S     E +    D +  + T  ++   + +  + N
Sbjct: 210 RQDRLSDLI-HKSENFPDLKSCSVEVHFEYVIDKPDGTTIINTVKEKLVITRKAFKNN 266


>gi|327534571|gb|AEA93405.1| DNA repair protein RecN [Enterococcus faecalis OG1RF]
          Length = 557

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67 IGSP 70
           G+ 
Sbjct: 57 QGAN 60


>gi|312114834|ref|YP_004012430.1| DNA repair protein RecN [Rhodomicrobium vannielii ATCC 17100]
 gi|311219963|gb|ADP71331.1| DNA repair protein RecN [Rhodomicrobium vannielii ATCC 17100]
          Length = 567

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 91/297 (30%), Gaps = 40/297 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I +      L L F+   T+F G+ G GK+ IL+++S     RG        + R G+
Sbjct: 5   LSIRDIVLIDKLDLGFEKGFTVFTGETGAGKSIILDSLSLALGARG-----DGGLVRRGA 59

Query: 70  ------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV--VDE 115
                        +  +     E      D  I    + +       IND  +    + +
Sbjct: 60  TSASVTASFDLNDAHPAMALLAEQGFDSEDTLILRRVQGEDGRTKAFINDRPVSTGLLKQ 119

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMRGRN 170
           L K L           +    S   R  LD+            R      +  + +    
Sbjct: 120 LGKMLVEIHGQHDDRALL--DSATHRHLLDQFGGLIGEVQEVSRLWEAWREKNKAVDELE 177

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVK------INIARVEMINALS-----SLIMEYVQKE 219
           + L     +  + ++   ++ +L  +      +   R  ++ A         I + +   
Sbjct: 178 KALAVAEREKDYLTAACEELNQLAPQPGEEDDLATRRASIVAAQKARADLEDIADALNAP 237

Query: 220 NFPHIKLSL---TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
            FP  KLS              +   ++    + L +  +   +    L G    ++
Sbjct: 238 QFPAAKLSAALRRLERTPNIPDALKPIQSALERVLIEAEEARELVEAQLRGESGDNV 294


>gi|20145494|emb|CAD29584.1| SMC5 protein [Drosophila melanogaster]
          Length = 1030

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I  +   +F +Y+ +         +  G NG GK+ I+ AI  L  G       R AS 
Sbjct: 15  RIHSVYCKDFVSYSEITFHPKHYLNVLTGPNGSGKSTIVSAI-ILGLGGEPILLDRSASV 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD  +    S  +   RV G              +   +    +ND      + L 
Sbjct: 74  ADYIQSNKTSA-TIIVRVYGR-TPNTTETFRRIINSNGLSTFSVNDKDTSKKNFLA 127


>gi|91775754|ref|YP_545510.1| condensin subunit Smc [Methylobacillus flagellatus KT]
 gi|91709741|gb|ABE49669.1| condensin subunit Smc [Methylobacillus flagellatus KT]
          Length = 1168

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 26/166 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L ++ F+++     L    Q    VG NG GK+N++E+I ++   S  +  R  S
Sbjct: 1   MRLTHLKLAGFKSFVDPTTLHIHGQRVGVVGPNGCGKSNVMESIRWVLGESSAKEMRSES 60

Query: 61  YADVTRIGS-PSFFSTFARVEGM------------EGLADISIKLETRDDRSVRCLQIND 107
            ADV   GS     ++ A VE +               A+IS+K     ++      IN+
Sbjct: 61  MADVIFNGSGNRKLASRASVELIFDNSLGGAAGEWSQYAEISVKRVIEREKGS-SYFINN 119

Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
             +R  D         L           ++ RI      E R FL+
Sbjct: 120 TAVRRRDVADLFLGTGLGGRAYAIIGQNTISRIVEARPEEMRVFLE 165



 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 71/197 (36%), Gaps = 39/197 (19%)

Query: 172  LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
             L +G   ++  S +E ++A LGV+I         AL  + +  +Q+      +      
Sbjct: 936  SLVQGLTANTKTSDLERRIAALGVEI--------EALGPVNLAALQELESERERKQYLDS 987

Query: 232  LDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR------TLIGPHRSDLIVDYCD- 279
                 +Q+   L++   +   + R       D ++R        L G  ++ L +   + 
Sbjct: 988  QSADLEQAVATLEDAIRRIDRETRIRLQHTYDEVNRNFAELFAELFGGGQARLEMLGDEI 1047

Query: 280  --------------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
                          K  TI   S GE+ +  + +  A  RL       AP  L+DE+ A 
Sbjct: 1048 LDTGMQVFAQPPGKKNSTIHLLSGGEKALTALALVFALFRL-----NPAPFCLMDEVDAP 1102

Query: 326  LDEDKRNALFRIVTDIG 342
            LD+        +V  + 
Sbjct: 1103 LDDSNTERFCALVKKMS 1119


>gi|148252802|ref|YP_001237387.1| hypothetical protein BBta_1241 [Bradyrhizobium sp. BTAi1]
 gi|146404975|gb|ABQ33481.1| hypothetical protein BBta_1241 [Bradyrhizobium sp. BTAi1]
          Length = 610

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  L IS FR   S  ++   +H + VG N  GKT I+EA++ L
Sbjct: 1  MHIIRLKISGFRGARSADILLG-RHAVLVGSNNSGKTTIIEALALL 45


>gi|329935549|ref|ZP_08285380.1| DNA repair protein [Streptomyces griseoaurantiacus M045]
 gi|329304963|gb|EGG48832.1| DNA repair protein [Streptomyces griseoaurantiacus M045]
          Length = 589

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 78/245 (31%), Gaps = 35/245 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     + A +
Sbjct: 9   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADAAL 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            RIG+ +     A VEG        I +      +VR     +     +D+    +  + 
Sbjct: 59  VRIGAKN-----AVVEGR-------ISVPDAGSAAVRA----EEAGAELDDGALLISRTV 102

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRNRLLTEGYFDSSWC 183
                 R   G        L  +   +   H +       +L R R  L      D    
Sbjct: 103 SAEGRSRAHLGGRSVPVGMLAELADELVAVHGQTDQQGLLKLSRQRQAL------DRYAG 156

Query: 184 SSIEAQMAELGVKINIAR--VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
            +I   +A+        R     +  +++   E  Q+ +     L     ++ +  +   
Sbjct: 157 DTIAVPLAKYTGAYRRLRAVAAELEEITTRARERAQEADLLRFGLDEIAAVEPRAGEDVE 216

Query: 242 ALKEE 246
              E 
Sbjct: 217 LAAEA 221


>gi|238026293|ref|YP_002910524.1| DNA repair protein RecN [Burkholderia glumae BGR1]
 gi|237875487|gb|ACR27820.1| DNA repair protein RecN [Burkholderia glumae BGR1]
          Length = 549

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 17/126 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A L L FDA  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVARLDLEFDAGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++     AD S+ L    D S R    IN     +  + 
Sbjct: 57  AGCQRADITAEFTLHDRVAQWLDAHAFDADDSVMLRRVIDASGRSRAFINGTSATLSQLR 116

Query: 115 ELNKHL 120
           EL + L
Sbjct: 117 ELGEML 122


>gi|168234207|ref|ZP_02659265.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472698|ref|ZP_03078682.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194459062|gb|EDX47901.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205331829|gb|EDZ18593.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + FA  +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  SGATRADLCARFALKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               + LT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QQLTKPEQQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
           S   + A    +   AR ++ +     +  + Q+      +  L  +   + +       
Sbjct: 148 SYANEAAL--AQQMAARYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDFNPQAG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|254373073|ref|ZP_04988562.1| hypothetical protein FTCG_00648 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570800|gb|EDN36454.1| hypothetical protein FTCG_00648 [Francisella novicida GA99-3549]
          Length = 388

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 8/136 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I+ +R+  +L +    +  I  G N  GK+N+ +A+  L+        +   V  
Sbjct: 2   LKILAINHYRSLFNLVIPL-KKLNIITGVNASGKSNLYKALRLLAET------AEGGVIH 54

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             +           G E ++   IK E     + +   +  + +   D+L  +       
Sbjct: 55  SLAKEGGLNTTFWAGPEKISRQMIKGEVAIQGNSKQN-VARLRLGFADDLFGYSISLGYP 113

Query: 127 PSMDRIFSGLSMERRR 142
                 FS     +R 
Sbjct: 114 EPSLSAFSLDPEIKRE 129


>gi|300820009|ref|ZP_07100189.1| conserved domain protein [Escherichia coli MS 107-1]
 gi|300527458|gb|EFK48520.1| conserved domain protein [Escherichia coli MS 107-1]
          Length = 78

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          I  L +  F+ +  L L F     I VGDN  GK+ IL A+  +      R 
Sbjct: 4  ITRLMLQNFKKFPELDLRFTHDRNILVGDNESGKSTILLALDLVLSDSRHRV 55


>gi|300856103|ref|YP_003781087.1| putative ATP-binding protein [Clostridium ljungdahlii DSM 13528]
 gi|300436218|gb|ADK15985.1| predicted ATP-binding protein [Clostridium ljungdahlii DSM 13528]
          Length = 249

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 7/51 (13%)

Query: 6  KIKFLNISEF-----RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          KIK  +   F     +N +S  L F  + T  VG+NG GK+ ILEAI+ LS
Sbjct: 19 KIKSFSTYPFCLPVIKNLSS--LKFHPKVTFIVGENGTGKSTILEAIAVLS 67


>gi|190341579|gb|ACE74866.1| RecN [Escherichia hermannii]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 28/208 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHNGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPS-------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFSLKDTPAAQRWLEENQLEEGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            + EL + L       +   +       +R  LD       +     +H R+     R +
Sbjct: 116 QLRELGQVLIQIHGQHAHQLLLK--PEHQRTLLDGYAGEYALTQQMAQHYRQWHQSCRDL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELG 194
               +   E    +        ++ E  
Sbjct: 174 AAHQQQSQERTARAELLQYQLKELNEFA 201


>gi|160945681|ref|ZP_02092907.1| hypothetical protein FAEPRAM212_03212 [Faecalibacterium
          prausnitzii M21/2]
 gi|158443412|gb|EDP20417.1| hypothetical protein FAEPRAM212_03212 [Faecalibacterium
          prausnitzii M21/2]
          Length = 577

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +++K + +  FR      + F+   T  VG+N  GKT IL A+
Sbjct: 1  MRLKSVEVENFRAIKKCSIRFNE-LTALVGENNSGKTAILRAL 42


>gi|150007349|ref|YP_001302092.1| DNA repair protein recN [Parabacteroides distasonis ATCC 8503]
 gi|255014020|ref|ZP_05286146.1| DNA repair protein recN [Bacteroides sp. 2_1_7]
 gi|256839640|ref|ZP_05545149.1| DNA repair protein RecN [Parabacteroides sp. D13]
 gi|298375337|ref|ZP_06985294.1| DNA repair protein RecN [Bacteroides sp. 3_1_19]
 gi|149935773|gb|ABR42470.1| DNA repair protein recN [Parabacteroides distasonis ATCC 8503]
 gi|256738570|gb|EEU51895.1| DNA repair protein RecN [Parabacteroides sp. D13]
 gi|298267837|gb|EFI09493.1| DNA repair protein RecN [Bacteroides sp. 3_1_19]
          Length = 554

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 76/205 (37%), Gaps = 21/205 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F    +L + FD   ++  G+ G GK+ IL A+S +    + G+  ++ S  
Sbjct: 2   LKSLFIQNFVLIDNLDIRFDKGFSVITGETGAGKSIILGALSLVLGQRADGKSIKKGSDK 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADIS-------IKLETRDDRSVRCLQINDVVIR--VV 113
            V       F  +  ++E      D+        ++ E       R   +ND  +   ++
Sbjct: 62  CVI---EAVFDVSKYQLEPFFLSNDLEYDADSCILRRELYASGKSRAF-VNDSPVSLTIL 117

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRNR 171
            EL    R+  +      +  G +  + + +D M     +   +++    ++ L R    
Sbjct: 118 KELGS--RLIDIHSQHQNLLLGDNRFQLKVIDVMAENEILLILYKKEFTRYQALRRELKD 175

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVK 196
           L  +          I  Q+ +L   
Sbjct: 176 LRDKAAQSKQEEDYIRFQLEQLDEA 200


>gi|167034835|ref|YP_001670066.1| chromosome segregation protein SMC [Pseudomonas putida GB-1]
 gi|166861323|gb|ABY99730.1| chromosome segregation protein SMC [Pseudomonas putida GB-1]
          Length = 1162

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 98/325 (30%), Gaps = 46/325 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKCIRLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
             DV   GS              F ++   + G     A+ISI+ +   D       +N 
Sbjct: 61  MTDVIFNGSSGRKPVSQASIELVFDNSETTLVGEYAAYAEISIRRKVTRDGQN-SYYLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRR 158
              R  D +      + L P    I               E R F++             
Sbjct: 120 TKCRRRD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEELRNFIEE---------AAG 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWC----SSIEAQMAEL-----GVKINIARVEMINALS 209
           +  ++   R     +     + +        +E Q+  L       +           + 
Sbjct: 170 ISKYKERRRETENRIRRTQENLARLTDLREELERQLERLHRQAQAAEKYREYKAQERQMK 229

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
           + +     +     ++   +   D          ++  A    +  +             
Sbjct: 230 ACLAALRWRGLDEQVRQRESVIGDQGVSHEALVAEQRNADASIERLRDGHHELSERFNQV 289

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKV 294
           +        D A        G+Q++
Sbjct: 290 QGRFYSVAGDIARVEQSIQHGQQRL 314


>gi|116497135|gb|AAI26209.1| SMC1B protein [Homo sapiens]
          Length = 1161

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 62/155 (40%), Gaps = 16/155 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
            ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3   HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQ 62

Query: 63  DVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKH 119
           ++   G+      S+ A V+ +        K   R  R      + ND ++     + + 
Sbjct: 63  ELI-HGAHIGKPISSSASVKIIYVEESGEEKTFARIIRGGCSEFRFNDNLVSRSVYIAEL 121

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
            +I  +V + + +               ER +F +
Sbjct: 122 EKIGIIVKAQNCLVFQGTVESISVKKPKERTQFFE 156


>gi|116071378|ref|ZP_01468647.1| Chromosome segregation protein SMC [Synechococcus sp. BL107]
 gi|116066783|gb|EAU72540.1| Chromosome segregation protein SMC [Synechococcus sp. BL107]
          Length = 1204

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  + +  F+++  ++ +  +   T+  G NG GK+NIL+ + F   L+  RG R   
Sbjct: 2  VYINQVGLKHFKSFGGAMTIPLEEGFTVVTGPNGSGKSNILDGVLFCLGLANSRGMRADR 61

Query: 61 YADVTRIG 68
            D+   G
Sbjct: 62 LPDLINSG 69


>gi|320120432|gb|EFE27625.2| SMC family protein [Filifactor alocis ATCC 35896]
          Length = 1180

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 107/314 (34%), Gaps = 43/314 (13%)

Query: 5   IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRA 59
           +K+K + +  F+++ +    +         VG NG GK+N+L+A  ++      +  R  
Sbjct: 1   MKLKSIELKGFKSFQNKTKIVFPVDGLVSIVGPNGSGKSNVLDAFRWVLGEQSAKTLRGE 60

Query: 60  SYADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVR----CLQINDVVI 110
              DV   G+      +        +      D+     +   ++ R       IN+   
Sbjct: 61  KMEDVIFSGTQFKKPLNMCEVEIVFDNSSHTLDLDYDEVSIRRKAYRSGESSFYINNKSC 120

Query: 111 RVVDELNKHLRISWLVPS---------MDRIFSGLSMERRRFLDRMVFAIDPRH------ 155
           R + ++ +    S +            +D I +  S +RR+  +        R+      
Sbjct: 121 R-LKDIRELFMNSGIGREGYSIVGQGKVDEIVNANSQDRRKIFEEACGITKYRYKKEENE 179

Query: 156 ---RRRMIDFERL------MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE-MI 205
               R   + ER+      +  R   L +    +     ++ ++    + + +   + ++
Sbjct: 180 RKLSRVKENLERIEDVYAEIERRVLPLEKEKEKAEQYFLLKKELKVSELNLILKETKGIV 239

Query: 206 NALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR--KMDSMSR 262
             + +   E  Q+E      +L L    + K +      ++E  ++    +  +     +
Sbjct: 240 EQIQTDEEELHQREQERLSKELQLENLQEQKEEHDNFRKEQEQLQERMQQQLIEKSEQQQ 299

Query: 263 RTLIGPHRSDLIVD 276
                  ++D IV 
Sbjct: 300 TLTYNIQKNDEIVK 313


>gi|312170948|emb|CBX79207.1| Structural maintenance of chromosomes protein 3 [Erwinia amylovora
           ATCC BAA-2158]
          Length = 666

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 31/232 (13%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           +     +R ++ + E  +      +     D       E ++ +L  +    R +    L
Sbjct: 397 WQHFDLYRNQLAEVELQLEQAAANIARAPEDDQLMDLFE-KLRDLDRQREAQRQKYCLLL 455

Query: 209 SSLIMEYVQKEN--------FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR----- 255
                   Q+ +           ++         K  Q    L + Y+  L   R     
Sbjct: 456 EQAKHTKQQQLDCVRQIQKAHDAVRYQHNYSSAFKNAQETINLLDRYSDVLTQARVKTLA 515

Query: 256 -----------KMDSMSRRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                      + + +     I P   D+ +   + ++      S GE+++  + I    
Sbjct: 516 TNFELAYRKLARKEDLQLSAHINPGTFDVELIDENGSVINRKLLSAGEKQIYAIAI---- 571

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
              ++ T+G    +++D     LD   R+ L      +   Q+ +  TD  V
Sbjct: 572 LEALAKTSGRDLPVIIDTPLGRLDSQHRDKLINHYFPEASHQVVLLSTDTEV 623



 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPG 53
          + IK L +  FR ++ +  +    +            +F G NG GKT+IL AI     G
Sbjct: 1  MLIKQLVLRNFRVFSGTHTIDLAPRKRLHDENPRPIVLFGGLNGAGKTSILSAIRLALYG 60

Query: 54 R 54
          R
Sbjct: 61 R 61


>gi|303239857|ref|ZP_07326380.1| DNA repair protein RecN [Acetivibrio cellulolyticus CD2]
 gi|302592567|gb|EFL62292.1| DNA repair protein RecN [Acetivibrio cellulolyticus CD2]
          Length = 575

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 25/193 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        + +       +  G+ G GK+ I+++I+ +   R        D+ R
Sbjct: 2   LQQLQIQNIAIIDKVEIELGDGLNVLTGETGAGKSIIIDSINAILGER-----LSKDLIR 56

Query: 67  IGSPSFFSTFA------RVEGMEGLADIS--------IKLETRDDRSVRCLQINDV--VI 110
            G               R+ G+ G   I         I  E        C +IN     +
Sbjct: 57  AGKDKAAVEAVFTIDDDRLSGLLGEYGIEPEEDGTLIISREFTLSGKNTC-RINGKIATV 115

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLS--MERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
            ++ ++ + L           +    S       F D  +  +   +  ++  ++ + + 
Sbjct: 116 SMLKQIGEMLIDIHGQHDNQSLLRTESHIDLLDSFADENIHNLKNNYLEKLSQYQEI-KN 174

Query: 169 RNRLLTEGYFDSS 181
           R + L+    D  
Sbjct: 175 RLKSLSGDKNDRE 187


>gi|300859955|ref|ZP_07106043.1| DNA repair protein RecN [Enterococcus faecalis TUSoD Ef11]
 gi|300850773|gb|EFK78522.1| DNA repair protein RecN [Enterococcus faecalis TUSoD Ef11]
 gi|315144370|gb|EFT88386.1| DNA repair protein RecN [Enterococcus faecalis TX2141]
 gi|315162950|gb|EFU06967.1| DNA repair protein RecN [Enterococcus faecalis TX0645]
          Length = 557

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L++  F   +SL+L F    T+  G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2  LQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRG-----SSDYIR 56

Query: 67 IGSP 70
           G+ 
Sbjct: 57 QGAN 60


>gi|301093678|ref|XP_002997684.1| chromosome segregation protein, putative [Phytophthora infestans
           T30-4]
 gi|262109933|gb|EEY67985.1| chromosome segregation protein, putative [Phytophthora infestans
           T30-4]
          Length = 1211

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 41/121 (33%), Gaps = 11/121 (9%)

Query: 5   IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           + IK + +  FR+Y        F  QH + +G NG GK+N  +AI F      F   R  
Sbjct: 1   MHIKQVIVCGFRSYKDQVAVAPFSNQHNVVIGRNGTGKSNFFDAIRFGLLTSRFANLRPD 60

Query: 60  SYADVTRIGSPSFF------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
               +   GS            F   +G   + D  + L            +N   I   
Sbjct: 61  ERQALLHEGSGKHVMSAYVEIVFDNSDGRLPVDDTEVTLRRTIGVKKDEFFLNRKHITKS 120

Query: 114 D 114
           D
Sbjct: 121 D 121


>gi|260890845|ref|ZP_05902108.1| conserved hypothetical protein [Leptotrichia hofstadii F0254]
 gi|260859398|gb|EEX73898.1| conserved hypothetical protein [Leptotrichia hofstadii F0254]
          Length = 420

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/380 (16%), Positives = 118/380 (31%), Gaps = 72/380 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-----HTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           +KIK L+I E+    +L + F+++       +  G NG GKT +LE+             
Sbjct: 1   MKIKNLHIKEYNGLENLDINFESEGKVLDLIVLAGINGSGKTRVLES------------- 47

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
                 R     F S    VE      +  +     +   +  +   +   +   E    
Sbjct: 48  -----IRYWFEMFRSKAVNVELFYEENEREVLESLMNSEGLTEV---EKEAQKDIEFTDC 99

Query: 120 LRISWLVPSMDRIFS------GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           LR         R            +  R F    +F     +    I+FE + +     L
Sbjct: 100 LRNIKFYNYDYRHNKTENQNYNSKIISRSFEKLKIFP-KIIYVPTEINFEEI-KKAQTNL 157

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            + Y   +   S E                 I  + S I   + K       L++     
Sbjct: 158 KKEYSFINIVDSYE-----------------IKDIPSYIATRISKVANEEEDLTMGQVRK 200

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             F +            +F+  ++D          +   +  D   K   I   S+GE++
Sbjct: 201 KVFAE---------INGIFEILELDVKLSEISKDENSMPIFTDSSGKKFGINELSSGEKQ 251

Query: 294 VVL--VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTG 349
           + L  + I +              I+++DE    L    +  +  +   IG  +QI +  
Sbjct: 252 LFLRTLAIKMLE--------PENSIIMIDEPELSLHPKWQQKIIDVYKKIGKNNQIILAT 303

Query: 350 TDKSVFDSLNETAKFMRISN 369
               +  S+ + +  + + N
Sbjct: 304 HSPHILGSVEKESIILLVKN 323


>gi|227892863|ref|ZP_04010668.1| DNA repair ATPase [Lactobacillus ultunensis DSM 16047]
 gi|227865365|gb|EEJ72786.1| DNA repair ATPase [Lactobacillus ultunensis DSM 16047]
          Length = 824

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
           +EY   L  GR +D    + L    +         K   + + S G  + +   + LA  
Sbjct: 704 KEYLALLTGGRYVDLDLGKKLTVIRKD-------GKKRDVKYLSRGTAEQLYFALKLAFI 756

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
             I +       +L+D+   + D+ +   + +++ +I   +Q+ +     ++ D L 
Sbjct: 757 EQIKDEINLP--ILIDDSFVNFDDRRVGYIEKLLKEISENNQVLIFTAQGNLVDRLG 811



 Score = 39.5 bits (91), Expect = 0.77,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 109/345 (31%), Gaps = 46/345 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +++K + +  F  +++        +  +F G N  GK+  +  I  +  G   R  S   
Sbjct: 2   MRLKQIKMINFGQFSNKTFDLPSDKINVFFGANEAGKSTTVAFIKQIMFGFHLRSNSSPF 61

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  + SP   S    V G E   +       +  R +  ++ +  V+      +
Sbjct: 62  FEDYTPLAHV-SPMGGSLIFDVNGSEYELERLYAKGDKTKRGILTVKKDGQVVPENLFFD 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           +   I     +   IF+            M+  +    +  ++        R   L  G 
Sbjct: 121 QIENIDGSFYADSFIFNQE----------MLGQVSSLSQEDLL-------ERIYYL--GA 161

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            DS     +    A+   K+              + + +++       L+ T      ++
Sbjct: 162 ADSGKLLEMRDDFAKEASKLFKK-----TGKKPEVNQLLKQLETDREDLTQTQDEFNNYE 216

Query: 238 Q---SFCALKEEYAKK---LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           +         EE  K+   L D    +   R           +++   +   +A  S   
Sbjct: 217 ELDRDLTNKAEELQKRQKVLQDLHAKEQNLRDLQKELGNYQTLLELQKQVKDVAFDSESY 276

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
           QK   +   +A  R +  T        L+E  A LD D ++ +  
Sbjct: 277 QKAQDI---MAQGRNLQRTIKS-----LEEQLADLDVDNQDNVIE 313


>gi|254522210|ref|ZP_05134265.1| DNA repair protein RecN [Stenotrophomonas sp. SKA14]
 gi|219719801|gb|EED38326.1| DNA repair protein RecN [Stenotrophomonas sp. SKA14]
          Length = 558

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2  LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67 IGSPSF 72
           G+   
Sbjct: 57 HGAARA 62


>gi|197249669|ref|YP_002147619.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197213372|gb|ACH50769.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + FA  +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  SGATRADLCARFALKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               + LT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QQLTKPEQQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
           S   + A    +   AR ++ +     +  + Q+      +  L  +   + +       
Sbjct: 148 SYANEAAL--AQQMAARYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDFNPQAG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|167896296|ref|ZP_02483698.1| hypothetical protein Bpse7_21308 [Burkholderia pseudomallei 7894]
          Length = 783

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA-D 63
          + I+ + I  FR     R+   +  +IFVG N  GKT+   A+   +       +     
Sbjct: 1  MHIETVWIRNFRRLKDARIDLASDISIFVGSNNSGKTSAGHALQLFTAA-----SRDRFS 55

Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLET 94
          +    S  +    A  EG EG    SI ++ 
Sbjct: 56 LHDFSSDCWDDINAFGEGAEGSELPSISIDI 86


>gi|308799039|ref|XP_003074300.1| DNA repair protein recN (ISS) [Ostreococcus tauri]
 gi|116000471|emb|CAL50151.1| DNA repair protein recN (ISS) [Ostreococcus tauri]
          Length = 678

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 91/260 (35%), Gaps = 29/260 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I+ F   +   + F+    +  G +G GK+ +L+AI+ +        +   +   
Sbjct: 62  LQRLKITNFALVSEQTVEFERGLNVITGKSGSGKSVLLDAIAQIC------GSPAKE--- 112

Query: 67  IGSPSFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             S    ++ A++E    +A  S+ +  +  +D+       +   ++      +      
Sbjct: 113 -ESIRADTSGAKLEATFHVATESLGMIYDVVNDQITSIASKDGKSVKPFGPDKEDKNALK 171

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--EGYFDSSW 182
           +   +  + S    +R R + R+   + P          + ++    +L    G   +S 
Sbjct: 172 ISRELQYVDSNGKTKRIRSVCRINGRVVPL---------KALKALGDILMDFNGQGAAST 222

Query: 183 CSSIEAQMAELGVK-----INIARVEMINALSSLIMEYVQK-ENFPHIKLSLTGFLDGKF 236
            S   AQ+A L        +      + + L++   +     E  P  +  L   L+  +
Sbjct: 223 LSDEGAQLALLDEWAGTKVLRQKFERLSDDLTAQFNKVKNAVELLPGEREELQAELEEYY 282

Query: 237 DQSFCALKEEYAKKLFDGRK 256
                 L++   K      +
Sbjct: 283 AVDPEPLEDVALKAELRRLE 302


>gi|326790855|ref|YP_004308676.1| DNA repair protein RecN [Clostridium lentocellum DSM 5427]
 gi|326541619|gb|ADZ83478.1| DNA repair protein RecN [Clostridium lentocellum DSM 5427]
          Length = 562

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 74/252 (29%), Gaps = 23/252 (9%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFA 77
              + L  D +  IF G+ G GK+ ++++I F    R         + R G      T  
Sbjct: 13  IEEVELNLDPKLNIFTGETGAGKSMLIDSIQFAIGNRS-----SKQIIRKGEDMASVTLC 67

Query: 78  RVE----GMEGLADISIKLETRD--------DRSVRCLQINDVVIRVV--DELNKHLRIS 123
             +    G+E L    I +E  +               ++N  V       EL+  L   
Sbjct: 68  FEDQIGMGIEYLKQHEISVEANEIILERVIYQSGRTIYKVNGSVATRQMVKELSSLLIDV 127

Query: 124 WLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
                   +    S  R    F ++        +RR    ++ +     ++         
Sbjct: 128 HGQHEPQSLLDIASHIRLLDSFGEKDFSQKKEAYRRCYERWQSVKADIQKIGDNDRKKLQ 187

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
               +  Q+ E+G        E    L          E           FLDG+ + S  
Sbjct: 188 LKDMLSFQINEIGSAKLKKDEE--ENLKEQYDILSHAEKIMMQCQKSYDFLDGETETSAT 245

Query: 242 ALKEEYAKKLFD 253
            L  +    L D
Sbjct: 246 LLLGQAIHALQD 257


>gi|190341581|gb|ACE74867.1| RecN [Escherichia vulneris]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 79/256 (30%), Gaps = 45/256 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----ADADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             +      + F+  +       +    +  D R     ++     R    +N       
Sbjct: 57  TDAARADLCARFSLKDTPAAQRWLE-ANQLEDGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+     +   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKSDHQKTLLD 147

Query: 185 ------SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                 ++  QMAE   ++       +        E   +     +   L    D     
Sbjct: 148 GYAGEYALTQQMAEH-YRLWNHSCRELAQHQQQSQERSARAEL--LHYQLKELNDFSPQP 204

Query: 239 SFCALKEEYAKKLFDG 254
                 +E  K+L + 
Sbjct: 205 GEFERIDEEYKRLANS 220


>gi|190341515|gb|ACE74834.1| RecN [Enterobacter helveticus]
 gi|190341517|gb|ACE74835.1| RecN [Enterobacter helveticus]
 gi|190341519|gb|ACE74836.1| RecN [Enterobacter helveticus]
 gi|190341521|gb|ACE74837.1| RecN [Enterobacter helveticus]
 gi|190341523|gb|ACE74838.1| RecN [Enterobacter helveticus]
 gi|190341525|gb|ACE74839.1| RecN [Enterobacter helveticus]
 gi|190341527|gb|ACE74840.1| RecN [Enterobacter helveticus]
 gi|190341529|gb|ACE74841.1| RecN [Enterobacter helveticus]
 gi|190341531|gb|ACE74842.1| RecN [Enterobacter helveticus]
 gi|190341533|gb|ACE74843.1| RecN [Enterobacter helveticus]
 gi|190341535|gb|ACE74844.1| RecN [Enterobacter helveticus]
 gi|190341537|gb|ACE74845.1| RecN [Enterobacter helveticus]
 gi|190341539|gb|ACE74846.1| RecN [Enterobacter helveticus]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 91/256 (35%), Gaps = 38/256 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F A  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHAGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              P+        +  +G   +  ++ + D RS   +    V +  
Sbjct: 57  QGASRADLCARFSLKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       ++  LD         +       E  +  +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLLK--PEHQKTLLD--------GYAG-----ETTLTQQMAA 161

Query: 173 LTEGYFDSSWCSSIEAQMAE---LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
               +  S    ++  Q+++      ++   +++ +N  +    E+ ++ +  + +L+ +
Sbjct: 162 AYRQWHQSCRDLALHQQLSQERAARAELLHYQLKELNDFNPQAGEF-EQIDEEYKRLANS 220

Query: 230 GFLDGKFDQSFCALKE 245
           G L     Q+   L +
Sbjct: 221 GQLLSTSQQALHLLAD 236


>gi|255553458|ref|XP_002517770.1| structural maintenance of chromosomes 5 smc5, putative [Ricinus
           communis]
 gi|223543042|gb|EEF44577.1| structural maintenance of chromosomes 5 smc5, putative [Ricinus
           communis]
          Length = 1057

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 73/223 (32%), Gaps = 24/223 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---R 57
           M     I  + +  F  Y  L     ++  + +G NG GK++I+ AI+    G      R
Sbjct: 27  MPGN--IIEMELHNFMTYDHLFCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGR 84

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
             S     + G       + ++       D  I +  + D   +   + +  +    E+ 
Sbjct: 85  ATSVGAYVKRGEECA---YIKISLRGNTKDERITIMRKIDTHNKSEWLYNGKVVPKKEIG 141

Query: 118 KHLRISWLVPSMDRIFSGLSMER-RRFLDRMVFAIDPRHRRRMID-----FERLMRGRNR 171
           +          ++ +   L  +R   F       +     + + D       R +  ++R
Sbjct: 142 EI--TQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPIQHRALVEKSR 199

Query: 172 LLT-------EGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
            L              +   ++ A++ E  V+    R E++  
Sbjct: 200 ELKNIEVAVERNGETLNQLKALNAEL-EKDVERVRQREELLEK 241


>gi|71903829|ref|YP_280632.1| DNA repair protein [Streptococcus pyogenes MGAS6180]
 gi|94990753|ref|YP_598853.1| DNA repair protein recN [Streptococcus pyogenes MGAS10270]
 gi|71802924|gb|AAX72277.1| DNA repair protein [Streptococcus pyogenes MGAS6180]
 gi|94544261|gb|ABF34309.1| DNA repair protein recN [Streptococcus pyogenes MGAS10270]
          Length = 554

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 83/236 (35%), Gaps = 34/236 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V
Sbjct: 1   MMLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTEV 55

Query: 65  TRIGS-----PSFFSTFARVEGMEGLADISIKLE----TRDD---RSVRCLQINDVVIRV 112
            R G+       FFS  A  E +  L    I +E     R D         +IN  ++ +
Sbjct: 56  IRRGANKAEIEGFFSVDATPELVACLESSGIAMEEELIIRRDIFANGRSVSRINGQMVNL 115

Query: 113 V----------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
                      D   +H +   + P + +           F D+    +   ++     +
Sbjct: 116 ATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDA------FGDKAFEQLKENYQLIFDRY 169

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQ 217
           + L R                  +  Q+AE+    ++    + +N     +M + Q
Sbjct: 170 KSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQ 225


>gi|75910064|ref|YP_324360.1| ATPase-like protein [Anabaena variabilis ATCC 29413]
 gi|75703789|gb|ABA23465.1| ATPase-like protein [Anabaena variabilis ATCC 29413]
          Length = 370

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 12/101 (11%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-RRASYADVT 65
          +K + I  FR   +  L  DA   + +G NG GK+ + +A+  L   + F   +   ++ 
Sbjct: 2  LKRIYIDNFRCLVNFELNIDA-INLILGGNGSGKSTVFDALRRL---QSFIIGSHPIEMV 57

Query: 66 -------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99
                 R  + S       + G +G     + +E    +S
Sbjct: 58 FPIFECTRWQNLSIQRFEIELSGNQGNYKYELAVEHYQSKS 98


>gi|327263564|ref|XP_003216589.1| PREDICTED: structural maintenance of chromosomes protein 5-like
           [Anolis carolinensis]
          Length = 1079

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYA-- 62
            I  +++  F  Y +  +       + VG NG GK++I+ AI     G+  F   +    
Sbjct: 49  AIVRISMENFLTYDNCVVYPGPHLNVIVGANGTGKSSIVCAICLGLAGKPSFIGRADKVG 108

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVVDELNKHL 120
              + G          +E  +   ++ I  E     +     IN+    ++ V++    L
Sbjct: 109 HYVKRGCNKGVI---EIELYKNPKNLIITREISVTNNQSTWFINEKLSTLKAVEDHISAL 165

Query: 121 RISW-----LVPSM 129
            I        +P  
Sbjct: 166 NIQVGNLCQFLPQD 179


>gi|297709153|ref|XP_002831308.1| PREDICTED: structural maintenance of chromosomes protein 1B-like
           isoform 3 [Pongo abelii]
          Length = 1161

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 63/155 (40%), Gaps = 16/155 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
            ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3   HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKTIQ 62

Query: 63  DVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKH 119
           ++   G+      S+FA V+ +        K   R  R      + +D ++     + + 
Sbjct: 63  ELI-HGAHIGKPISSFASVKIVYVEKSGEEKTFARIIRGRCSEFRFDDNLVSRSVYIAEL 121

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
            +I  +V + + +               ER +F +
Sbjct: 122 EKIGIIVKAQNCLVFQGTVESISMKKPKERTQFFE 156


>gi|283835675|ref|ZP_06355416.1| DNA repair protein RecN [Citrobacter youngae ATCC 29220]
 gi|291068890|gb|EFE06999.1| DNA repair protein RecN [Citrobacter youngae ATCC 29220]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 81/254 (31%), Gaps = 41/254 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQNGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + FA  +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  AGATRADLCARFALKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKSEHQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN----FPHIKLSLTGFLDGKFDQSF 240
               + A L  ++         +   L     Q +        ++  L    +       
Sbjct: 148 GYANE-ASLTQEMAARYQRWHQSCRDLAHHQQQSQERAARAELLQYQLKELNEFNPQPGE 206

Query: 241 CALKEEYAKKLFDG 254
               +E  K+L + 
Sbjct: 207 FEQIDEEYKRLANS 220


>gi|254785948|ref|YP_003073377.1| chromosome segregation protein SMC [Teredinibacter turnerae T7901]
 gi|237684299|gb|ACR11563.1| chromosome segregation protein SMC [Teredinibacter turnerae T7901]
          Length = 1166

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  +
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVTFPSNLCAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGEA 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGME-GLADISIKLETRDDRSVRCLQIND 107
             DV   GS S            F ++   + G   G  +IS+K +   +       +N 
Sbjct: 61  MTDVIFNGSGSRKPVGQASIELVFDNSDGTIRGEFAGYNEISVKRKVTRESQN-FYYLNG 119

Query: 108 VVIRVVD 114
              R  D
Sbjct: 120 NKCRRRD 126



 Score = 38.0 bits (87), Expect = 2.8,   Method: Composition-based stats.
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 24/194 (12%)

Query: 173  LTEGYFDSSWCSSIEAQMAELGVKINI----------------ARVEMINALSSLIMEYV 216
            L E   +      +E ++ ++G +I+                  R   ++A +  + E +
Sbjct: 936  LLENLQEGDTIPDLEEELGKIGNRISRLGPINLAAIDEYKTESERKTYLDAQNEDLREAL 995

Query: 217  QKENFPHIKLSLTGFLDGK--FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
            +       K+        K  FDQ    L+E + K    G     ++   ++    + + 
Sbjct: 996  ETLENAIKKIDRETRTRFKETFDQINSGLQELFPKVFGGGHAYLELTGEDMLDTGIAIMA 1055

Query: 275  VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
                 K  TI   S GE+ +  + +  +  RL       AP  +LDE+ A LD+      
Sbjct: 1056 RPPGKKNSTIHLLSGGEKALTAIALVFSIFRL-----NPAPFCMLDEVDAPLDDANVGRY 1110

Query: 335  FRIVTDIGSQI-FM 347
             R+V ++ SQ+ F+
Sbjct: 1111 ARMVEEMSSQVQFI 1124


>gi|78184767|ref|YP_377202.1| ATPase [Synechococcus sp. CC9902]
 gi|78169061|gb|ABB26158.1| ATPase [Synechococcus sp. CC9902]
          Length = 212

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 18/132 (13%)

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCD-----KAITIAHGSTGEQKVVLVGIFLAHAR 305
           L      +       +G  R D ++         +       S G+Q+ + + + L    
Sbjct: 88  LGLNVSQELRLGHRRLGSDRQDQVLHRVGLQKISRMTPPEQLSGGQQRRLALAVQL---- 143

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGT-DKSVFDSLNETAK 363
                   A +LLLDE +A LD   R+ + ++++D+   Q+ +  T +  +F+  +  + 
Sbjct: 144 -----LRGAEVLLLDEPTAGLDWSVRSEVLKLLSDLAQEQVLIVVTHEPELFNRWD--SD 196

Query: 364 FMRISNHQALCI 375
            +R+ N Q   +
Sbjct: 197 RLRLENGQLTSM 208


>gi|15898520|ref|NP_343125.1| hypothetical protein SSO1710 [Sulfolobus solfataricus P2]
 gi|15898588|ref|NP_343193.1| hypothetical protein SSO1789 [Sulfolobus solfataricus P2]
 gi|284175705|ref|ZP_06389674.1| hypothetical protein Ssol98_13763 [Sulfolobus solfataricus 98/2]
 gi|13814957|gb|AAK41915.1| Hypothetical protein SSO1710 [Sulfolobus solfataricus P2]
 gi|13815037|gb|AAK41983.1| Hypothetical protein SSO1789 [Sulfolobus solfataricus P2]
 gi|261603021|gb|ACX92624.1| hypothetical protein Ssol_2488 [Sulfolobus solfataricus 98/2]
          Length = 464

 Score = 48.0 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 6   KIKFL----NISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPG----RGF 56
           ++  L     IS FR +   +++F   +  + +G N VGKT ILEAI+ L       R F
Sbjct: 196 RLSSLGIGIRISNFRRFRDFKMIFPEFKIGVILGKNNVGKTTILEAIAMLGKNEDKIRKF 255

Query: 57  RRASYADV 64
           R     ++
Sbjct: 256 RGNISTEI 263


>gi|330881573|gb|EGH15722.1| ATP binding protein [Pseudomonas syringae pv. glycinea str. race
          4]
          Length = 451

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
            +R +    + FD   TI +  NG GKT IL+A
Sbjct: 2  QNYRCFGEFEIDFDPHLTILIASNGGGKTTILDA 35


>gi|320325720|gb|EFW81781.1| ATP binding protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320327361|gb|EFW83375.1| ATP binding protein [Pseudomonas syringae pv. glycinea str. race
          4]
          Length = 451

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
            +R +    + FD   TI +  NG GKT IL+A
Sbjct: 2  QNYRCFGEFEIDFDPHLTILIASNGGGKTTILDA 35


>gi|312113497|ref|YP_004011093.1| hypothetical protein Rvan_0718 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218626|gb|ADP69994.1| hypothetical protein Rvan_0718 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 472

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 74/213 (34%), Gaps = 29/213 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS----PGRGFRRASYA 62
           I+ +  S F+ +    +    +  I VG N  GK++IL+A+  L       +  R+ +Y 
Sbjct: 2   IRSVTFSNFKRFKHFTISLQER-NIIVGPNNSGKSSILDALRILESCMRYAKS-RKPTYI 59

Query: 63  DVT-------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--INDVVIRVV 113
            +        +I   S +             D  I  + ++  SV+            +V
Sbjct: 60  SMDDQSGYGYQIPDSSLWIPVENTTNNYTDDDAIITFKHQNGTSVKIFIHPKRSTKCIIV 119

Query: 114 DELNKHLRISWLV---PSMDRIF--SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
            ++NK     +     P+   +    G   ER   +       + + R    +F      
Sbjct: 120 KDINKQYNTKFFSSSFPANIFVVPTLGPVEEREILVSDETVNANAKTRLSSRNF------ 173

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
           RN  L +   D S    I   ++E    ++I R
Sbjct: 174 RNIWLRKTETDYSL---INEMLSETWDGVSIQR 203


>gi|290961521|ref|YP_003492703.1| DNA repair protein [Streptomyces scabiei 87.22]
 gi|260651047|emb|CBG74166.1| putative DNA repair protein [Streptomyces scabiei 87.22]
          Length = 576

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 78/252 (30%), Gaps = 41/252 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +
Sbjct: 1   MLEEMRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETR---DDRSVRCLQINDVVIRVVDELN 117
              + RIG+ +      R+   EG A +    E     DD ++   +      R    L 
Sbjct: 51  DPALVRIGAKNA-VVEGRIAVPEGAAAVVRAEEAGAELDDGALLISRTVSAEGRSRAHLG 109

Query: 118 KHLRISWLVPSM-DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
                  ++  + D + +                          D + L++   +     
Sbjct: 110 GRSVPVGVLAELADELVA---------------------VHGQTDQQGLLKQSRQ---RA 145

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEM--INALSSLIMEYVQKENFPHIKLSLTGFLDG 234
             D     ++   + + G      R     ++ + +   E  Q+ +     L     ++ 
Sbjct: 146 ALDRYAGDAVAVPLTKYGEAYRRLRAVAGELDEIVTRARERAQEADMLRYGLDEIAGVEP 205

Query: 235 KFDQSFCALKEE 246
           +  +     +E 
Sbjct: 206 RAGEDVELAEEA 217


>gi|190573960|ref|YP_001971805.1| putative DNA repair protein [Stenotrophomonas maltophilia K279a]
 gi|190011882|emb|CAQ45503.1| putative DNA repair protein [Stenotrophomonas maltophilia K279a]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 84/277 (30%), Gaps = 36/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +  L F    T+  G+ G GK+ +++A+ FLS  R     + + V R
Sbjct: 2   LRHLSIKDFAVVRATELEFGPGMTVVSGETGAGKSLMVDALGFLSGLR-----ADSGVVR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--R 111
            G+                   +     ++      ++   R D   R   IN   +   
Sbjct: 57  HGAARAELSAEFALEQLQAARQWLADNELDDEEQCQLRRVIRADGGSRA-WINGRPVTLA 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLS------MERRRFLDRMVFAIDPRHRRRMIDFERL 165
            + +L   L           + +  S         R   +R          + ++D    
Sbjct: 116 QLGDLASLLVEIHGQHEQQALLTRPSQLALLDAYARNENERRQVRRAAAAWQALVDESLA 175

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  +  +     F       ++ +  E          E I AL +               
Sbjct: 176 LSQQGDVSDRIGFLEHQLRELDREDLE---------PESIAALGASHRRQAHASALLSAC 226

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            + +  L+G    S   L ++   +L    + D    
Sbjct: 227 QAASNQLNGDDGSSALDLLQQVRHELSRLIEHDPRLG 263


>gi|254228594|ref|ZP_04922019.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262392605|ref|YP_003284459.1| hypothetical protein VEA_001831 [Vibrio sp. Ex25]
 gi|151938976|gb|EDN57809.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262336199|gb|ACY49994.1| hypothetical protein VEA_001831 [Vibrio sp. Ex25]
          Length = 377

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS-PGRGFR----RASY 61
           I  L+++ F+ +  L L      T   G N  GKT+ +++I  LS   +  R     +  
Sbjct: 2   INKLDLTNFKCFKRLILPLS-HLTALTGFNASGKTSTIQSILLLSQNLKNIRQDDKVSLN 60

Query: 62  ADVTRIGS------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
             + R+GS              +++       IS+ L+     + R + I
Sbjct: 61  GTLVRLGSPGDVLYEHSDEKLIKIDIENEEEKISLSLDISKRNTDRTIDI 110


>gi|191168711|ref|ZP_03030490.1| DNA sulfur modification protein DndD [Escherichia coli B7A]
 gi|190901259|gb|EDV61029.1| DNA sulfur modification protein DndD [Escherichia coli B7A]
          Length = 666

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 74/232 (31%), Gaps = 31/232 (13%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           +     +R ++ + E+ +      +     D       E ++ +L  +      +  + L
Sbjct: 397 WQRFELYRTQLSEIEQQLEQAAANIARAPEDEQLMDLFE-KLRDLDRQREAQLQKYRSLL 455

Query: 209 SSLIMEYVQKEN--------FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR----- 255
                +  Q+ +            +   +     K  Q    L + Y+  L   R     
Sbjct: 456 EDAKRKKQQQLDCVRQIQKAHDAARYQHSYSSAFKNAQETINLLDRYSDVLTQARVKTLS 515

Query: 256 -----------KMDSMSRRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                      + + +     I P   D+ +   + ++      S GE+++  + I    
Sbjct: 516 TNFELAYRKLARKEDLQLSAHINPQTFDVELIDENGSVINRKLLSAGEKQIYAIAI---- 571

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
              ++ T+G    +++D     LD   R+ L      +   Q+ +  TD  V
Sbjct: 572 LEALAKTSGRDLPVIIDTPLGRLDSQHRDKLINHYFPEASHQVVLLSTDTEV 623



 Score = 41.4 bits (96), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPG 53
          + IK L +  FR +  +  +    +            +F G NG GKT+IL AI     G
Sbjct: 1  MLIKQLVLHNFRVFNGTHTIDLAPRKRPHDLNPRPIVLFGGLNGAGKTSILSAIRIALYG 60

Query: 54 R 54
          R
Sbjct: 61 R 61


>gi|297475488|ref|XP_002688026.1| PREDICTED: structural maintenance of chromosomes 1B [Bos taurus]
 gi|296486908|gb|DAA29021.1| structural maintenance of chromosomes 1B [Bos taurus]
          Length = 1235

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
          +++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3  RLEVLFVENFKSWRGRQVIGPFKRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQ 62

Query: 63 DVTR 66
          ++  
Sbjct: 63 ELIH 66


>gi|255720056|ref|XP_002556308.1| KLTH0H09966p [Lachancea thermotolerans]
 gi|238942274|emb|CAR30446.1| KLTH0H09966p [Lachancea thermotolerans]
          Length = 1224

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 90/276 (32%), Gaps = 29/276 (10%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60
           + IK + I  F+ Y +   V     +  + +G NG GK+N   A+ F+        +R  
Sbjct: 1   MYIKSVVIQGFKTYKNTTSVEGLSPRFNVIIGGNGSGKSNFFAAVRFVLSDDYSNLKREE 60

Query: 61  YADVTRIGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQ----------INDV 108
              +   G+ S  S +  +      G   I+  +   ++  VR  +          +N  
Sbjct: 61  RQGLIHQGTGSVMSAYVEIIFHDPSGQMMITSGIPMTEEHIVRVRRTIGLKKDEYSVNGK 120

Query: 109 VIRVVDELNKHLRISWLV--------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
                 ++++                P    +    + +R R               ++ 
Sbjct: 121 TCHK-SDISRMFESVGFSAVNPYNIVPQGRIVAVTNAKDRERLALLEEVVGAKSFEIKLR 179

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           +  + M   NR  T    + +   +   ++ E   ++     + +     +    +    
Sbjct: 180 ESAKKMEATNRDRTRIDSELAELRTRLDELNEERQELEKY--QKLERDRRIFQFVLYDRE 237

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
              +   +   L+ +++    +  EE+ ++L+   +
Sbjct: 238 LNEVTSQIES-LEDEYNHVLQS-SEEFLQELYKREE 271



 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 38/100 (38%), Gaps = 13/100 (13%)

Query: 273  LIVDYCDKAITIAHGST--GEQKVV-LVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
            + V +  K     +     G QK V  + + LA           AP  L DEI A LD+ 
Sbjct: 1103 ISVSFNSKNNEQLYVEQLSGGQKTVCAIALILA-----IQMVDPAPFYLFDEIDAALDKQ 1157

Query: 330  KRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETAKFMRI 367
             R ++  ++ ++   +Q   T       D L     F R+
Sbjct: 1158 YRTSVANVIKELSVHAQFICTT---FRSDMLQVADSFYRV 1194


>gi|188533122|ref|YP_001906919.1| recombination and repair protein [Erwinia tasmaniensis Et1/99]
 gi|188028164|emb|CAO96022.1| Protein used in recombination and DNA repair (DNA repair protein
           RecN) [Erwinia tasmaniensis Et1/99]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 63/208 (30%), Gaps = 28/208 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQRGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  HGATRADICARFSLKDTPSAQRWLSDNQLDDGNECLLRRVIGSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDPRHRRRMIDFERLM 166
            + +L + L       +   +    S  ++  LD       +     RH  +     R +
Sbjct: 116 QLRDLGQALIQIHGQHAHQLLLK--SEHQKMLLDAYAAEPELLQNMGRHYSQWHQSCRAL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELG 194
               +   E             ++ E  
Sbjct: 174 AQHQQQSQEREARRELLHYQLKELNEFA 201


>gi|78357638|ref|YP_389087.1| DNA repair protein RecN [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220043|gb|ABB39392.1| DNA replication and repair protein RecN [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 537

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 97/281 (34%), Gaps = 39/281 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L +        + L F     +  G+ G GK+ IL+A++FL+  R      
Sbjct: 1   MLELLRIRNLAL-----IEDMELEFAPGMNVLTGETGAGKSFILKALNFLTGDR-----L 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV------VD 114
            AD+ R G+    +  A     +G   I  +L     RS   L IND +           
Sbjct: 51  SADIVRAGADKA-TVEALFALSDGDLIIRRELTAHSGRS--RLFINDKLSSQETVRDMRS 107

Query: 115 ELN----KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            L     +H +   L PS         M R   L++    +  R  R + + +  +  R+
Sbjct: 108 SLIIHTSQHGQQKLLQPSFQAALLDTYMNRPDLLEQRDSLL--RSLRSLTEEKEALHERS 165

Query: 171 RLLTEGY----FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           R L +      F     + ++ Q  E    +   R+         +    Q +      L
Sbjct: 166 RSLADRRELLEFQQQEIAKVDPQPGEEDALLERKRL---------LRGQTQSKQLVEDAL 216

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           S  G  +G    +   L E   ++L            T+ G
Sbjct: 217 SCLGGYEGGIIPALGTL-ESTLRQLAAALPEYEEDATTVSG 256


>gi|33602915|ref|NP_890475.1| DNA repair protein [Bordetella bronchiseptica RB50]
 gi|33568546|emb|CAE34304.1| DNA repair protein [Bordetella bronchiseptica RB50]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 25/198 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F       L F    T+F G+ G GK+ +++A++     RG      A + R
Sbjct: 2   LRTLHIRDFVIVEQTELHFGDGFTVFSGETGAGKSILIDALALTLGERG-----DASMLR 56

Query: 67  IGSPSFFSTFA---------RVEGMEGLADISIKLETRDDRSVR-CLQINDVV--IRVVD 114
            G+     T            +   E  +   + L    D   R    IN +   I  + 
Sbjct: 57  EGAARADITAVFDAPPALRDWLAERELDSGDELALRRVIDSQGRSRAYINGMPATIAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNRL 172
           EL   L       +   +       +R  LD      +      +    +  L R     
Sbjct: 117 ELGDGLVDIHGQHAHQSLMR--PEAQRDLLDAHGGHAELRQTVAQAWKQWRALARQ---- 170

Query: 173 LTEGYFDSSWCSSIEAQM 190
           L     D+   ++   ++
Sbjct: 171 LDTAEQDAEALAAERDRL 188


>gi|320532809|ref|ZP_08033587.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
           F0337]
 gi|320134976|gb|EFW27146.1| conserved domain protein [Actinomyces sp. oral taxon 171 str.
           F0337]
          Length = 65

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
            P+L+LD++ A LDE +R AL ++V      +     D+ V   L        +++ + 
Sbjct: 6   EPVLILDDVFASLDEQRRRALAQMVAGAQQVLLTAAVDEDVPAEL--AGARYHVADGEV 62


>gi|261415085|ref|YP_003248768.1| hypothetical protein Fisuc_0674 [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371541|gb|ACX74286.1| conserved hypothetical protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 592

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 58/376 (15%), Positives = 112/376 (29%), Gaps = 78/376 (20%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
              +++  + IS  R+            T  +G N  GKTNIL  I +L           
Sbjct: 3   PQALRLSRITISNLRSIQRETFPLSD-FTALIGYNNAGKTNILMGIRWLLANFSL----- 56

Query: 62  ADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDD----RSVRCLQINDVVIRVVDEL 116
            D++    P+         EG+       +  E   +     S   L++   V R+  EL
Sbjct: 57  -DISYFDDPNHPVEAEGLFEGITEQVLNRLGEEKAAEVEPFLSGTTLRV-KKVQRIPGEL 114

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRM---------VFAIDPRHRRRM-----IDF 162
             ++      P            +R+  D +            + P             +
Sbjct: 115 PGNIEFWAFCP---------PNGKRKGKDWVRVNDKFTAAFNRMFPESIAIWDFEGNQAY 165

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
            +LM    + L   +      S +  Q  EL    +  + E I A    +   ++   FP
Sbjct: 166 TKLMHEIFKPLERKFGGE--LSQVIEQFTELLSPGSDCQAEEIKAFDKEVNSALRPL-FP 222

Query: 223 HIKLSLT---GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
            +++ L      L+     +   + +E      DG + D                     
Sbjct: 223 SVRVELDIPVPTLETFLKSATIKVVDE-----DDGFERDISRMGA--------------- 262

Query: 280 KAITIAHGSTGEQKVVLVGIF--LAHA-RLISNTTGFAPILLLDEISAHLDEDKRNAL-- 334
                     G Q+ + + +   LA   +  +N      +LL+D     L       +  
Sbjct: 263 ----------GSQRAIQMALIRYLAEIKKHHNNHYLSRKLLLIDSPELFLHPQAVELVRV 312

Query: 335 -FRIVTDIGSQIFMTG 349
             + +++ G Q+    
Sbjct: 313 ALKNLSNEGYQVIFAT 328


>gi|205353720|ref|YP_002227521.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273501|emb|CAR38478.1| DNA repair protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326628826|gb|EGE35169.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + FA  +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  TGATRADLCARFALKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               + LT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QQLTKPEQQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
           S   + A    +   AR ++ +     +  + Q+      +  L  +   + +       
Sbjct: 148 SYANEAAL--AQQMAARYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDFNPQAG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|62181254|ref|YP_217671.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62128887|gb|AAX66590.1| recombination and DNA repair protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322715740|gb|EFZ07311.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + FA  +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  TGATRADLCARFALKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               + LT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QQLTKPEQQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
           S   + A    +   AR ++ +     +  + Q+      +  L  +   + +       
Sbjct: 148 SYANEAAL--AQQMAARYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDFNPQAG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|16765999|ref|NP_461614.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|56414649|ref|YP_151724.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161615614|ref|YP_001589579.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167992464|ref|ZP_02573562.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168239454|ref|ZP_02664512.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168244707|ref|ZP_02669639.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262143|ref|ZP_02684116.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168464143|ref|ZP_02698060.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168823039|ref|ZP_02835039.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194443554|ref|YP_002041945.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449811|ref|YP_002046687.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194737809|ref|YP_002115693.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197264124|ref|ZP_03164198.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197363576|ref|YP_002143213.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|200386918|ref|ZP_03213530.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|207858031|ref|YP_002244682.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584535|ref|YP_002638333.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238909526|ref|ZP_04653363.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16421231|gb|AAL21573.1| protein used in recombination and DNA repair [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56128906|gb|AAV78412.1| DNA repair protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161364978|gb|ABX68746.1| hypothetical protein SPAB_03397 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402217|gb|ACF62439.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194408115|gb|ACF68334.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194713311|gb|ACF92532.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195633405|gb|EDX51819.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197095053|emb|CAR60599.1| DNA repair protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197242379|gb|EDY24999.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197287860|gb|EDY27248.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|199604016|gb|EDZ02561.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205329265|gb|EDZ16029.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205336458|gb|EDZ23222.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205340644|gb|EDZ27408.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205349004|gb|EDZ35635.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206709834|emb|CAR34186.1| DNA repair protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224469062|gb|ACN46892.1| DNA repair protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|261247874|emb|CBG25704.1| DNA repair protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994827|gb|ACY89712.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159243|emb|CBW18758.1| DNA repair protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913706|dbj|BAJ37680.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087161|emb|CBY96928.1| DNA repair protein recN Recombination protein N [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321223475|gb|EFX48540.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322614469|gb|EFY11400.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621466|gb|EFY18319.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624327|gb|EFY21160.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629374|gb|EFY26152.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633614|gb|EFY30356.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638343|gb|EFY35041.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639781|gb|EFY36464.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647358|gb|EFY43854.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650473|gb|EFY46883.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656034|gb|EFY52334.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661428|gb|EFY57653.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322662628|gb|EFY58836.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667001|gb|EFY63176.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671370|gb|EFY67493.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677623|gb|EFY73686.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681551|gb|EFY77581.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322683951|gb|EFY79961.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323131027|gb|ADX18457.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323195520|gb|EFZ80698.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197893|gb|EFZ83016.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203071|gb|EFZ88103.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205312|gb|EFZ90287.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210538|gb|EFZ95422.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323218181|gb|EGA02893.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221553|gb|EGA05966.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223773|gb|EGA08078.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230944|gb|EGA15062.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234704|gb|EGA18790.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238743|gb|EGA22793.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241443|gb|EGA25474.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246860|gb|EGA30827.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253259|gb|EGA37089.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257055|gb|EGA40764.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260472|gb|EGA44083.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264471|gb|EGA47977.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269606|gb|EGA53059.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|332989608|gb|AEF08591.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + FA  +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  TGATRADLCARFALKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               + LT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QQLTKPEQQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
           S   + A    +   AR ++ +     +  + Q+      +  L  +   + +       
Sbjct: 148 SYANEAAL--AQQMAARYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDFNPQAG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|294782451|ref|ZP_06747777.1| DNA repair protein RecN [Fusobacterium sp. 1_1_41FAA]
 gi|294481092|gb|EFG28867.1| DNA repair protein RecN [Fusobacterium sp. 1_1_41FAA]
          Length = 558

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 84/279 (30%), Gaps = 29/279 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  +  ++ L I        L + F+    +  G+ G GK+ IL  I+ L   +     +
Sbjct: 1   MGRKFMLRELKIENLAIIDELDIEFEKGFIVLTGETGAGKSIILSGINLLIGEK-----A 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISI-KLETRDDRSVRCLQINDVVIRVVDELNKH 119
             D+ R G  +  +        E    + +  ++T  D  +     N             
Sbjct: 56  SVDMIRDGEENLVAQGVFDVDEEQKKKLEVMGIDTDGDEIIIRRYYNRNGKARA-----F 110

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           +    +  +  +  +         L  +V     +      +  +L+   + L  +    
Sbjct: 111 VNNVRITLADLKEIAST-------LVDIVGQHSHQMLLNRNNHIKLLD--SFLTKDDKDI 161

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
               SS+ +Q  E+  +I     E    L        Q E    +KL          D  
Sbjct: 162 KEKLSSLLSQYREIKSRIEKIESEKKETLEKKEFYEYQLEEIEKLKLK---------DGE 212

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
              L+ EY K     +  + +        +  D  + + 
Sbjct: 213 DEILEAEYKKVFNAEKIREKVYESLEYLKYDDDSALGFI 251


>gi|288800632|ref|ZP_06406090.1| hypothetical protein HMPREF0669_01030 [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288332845|gb|EFC71325.1| hypothetical protein HMPREF0669_01030 [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 626

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 111/346 (32%), Gaps = 24/346 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIF-VGDNGVGKTNILEAISFL--SPGRGFRRASYAD 63
           IK + I  F+ + + +   +    +   G+NG GK++I  A+  L  S  +  R A Y +
Sbjct: 4   IKEIEIEGFKAFPN-KFNLELGKNLLMYGENGSGKSSIYYALHALLQSVYKSDRGAKYFN 62

Query: 64  VTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
                        +A +     +  I IKL+      +    ++        EL    + 
Sbjct: 63  NENSDENLINIYKWADIGDNGFMPHIKIKLDNGHQWELNRNGLSSPDTTDDSELRLLNKT 122

Query: 123 SWLVPSM--DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
           S  +      R  S  + E     +  +  I P +     D  + +      L       
Sbjct: 123 SAFINHSYISRFRSARNSEMINLWNVFIKDILPFYVPVGAD--KTLADTYYDLVTNRPYK 180

Query: 181 SWCSS--IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                     Q++             IN ++S   +   +      +  +  F+  K+ +
Sbjct: 181 VRNDINKFNEQLSG-----------FINRVNSKAADIYNQYFKDEDEADI--FIQVKYAK 227

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
               +   Y ++     K  +     +    +  L ++  + +I        E ++  + 
Sbjct: 228 DNDRINNPYHEEFQLLFKRQTAGGAYVWRYPKIGLHIEVDNISIQKPQSFFNEARLTAIA 287

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
           + +  A L S        L +D++   LD   R  +   +    +Q
Sbjct: 288 LAIRFACLQSENPQDGQFLAIDDMLISLDMSNRMKVVEYLLSEYTQ 333


>gi|258516123|ref|YP_003192345.1| SMC domain-containing protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257779828|gb|ACV63722.1| SMC domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 393

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRA--- 59
           +KI+ L I  ++ +  + +       +F+G NG GK+ + +   FL  +     R A   
Sbjct: 1   MKIESLRIKNYKVFRDVSIRDLPNMAVFLGANGSGKSTLFDVFGFLHDALTDNIRSALVK 60

Query: 60  --SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
              Y +V   G+        +     G   ++  L    ++  
Sbjct: 61  RGGYKEVVSRGAKGPIEFEIKFRPNPGDPIVTYILVIEPNKRG 103


>gi|254460341|ref|ZP_05073757.1| DNA repair protein RecN [Rhodobacterales bacterium HTCC2083]
 gi|206676930|gb|EDZ41417.1| DNA repair protein RecN [Rhodobacteraceae bacterium HTCC2083]
          Length = 549

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 8/108 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F +   +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRTLDIRDILIIDHLELGFQSGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISI--KLETRDDRSVRCLQINDVVIRV 112
            G+       A  +  +G A +SI  +     +  +   ++N    R 
Sbjct: 57  AGAEQG-EVTAVFDLPKGHAALSILEETGLPVEHELILRRVNRSDGRK 103


>gi|86749130|ref|YP_485626.1| DNA repair protein RecN [Rhodopseudomonas palustris HaA2]
 gi|86572158|gb|ABD06715.1| DNA repair protein RecN [Rhodopseudomonas palustris HaA2]
          Length = 561

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L + F     +  G+ G GK+ +L+A +    GRG      A + R
Sbjct: 2  LSRLSIRDIVLIERLDIEFSRGLAVLTGETGAGKSILLDAFALALGGRG-----DAALVR 56

Query: 67 IGSPSF 72
           G+   
Sbjct: 57 HGAEHG 62


>gi|55701276|ref|YP_138490.1| hypothetical protein pHVE14_47 [Sulfolobus islandicus]
 gi|55650986|emb|CAG38268.1| hypothetical protein [Sulfolobus islandicus]
          Length = 300

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + I  + I  FR       +   +  I VG+NG GKT+ LE+I   +  + 
Sbjct: 1  MSISEVKIEGFRGLEIASKL--KRVNIVVGENGSGKTSFLESIFMSALFQS 49


>gi|294794827|ref|ZP_06759962.1| hypothetical protein HMPREF0873_01438 [Veillonella sp. 3_1_44]
 gi|294454189|gb|EFG22563.1| hypothetical protein HMPREF0873_01438 [Veillonella sp. 3_1_44]
          Length = 965

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 71/166 (42%), Gaps = 12/166 (7%)

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
           ++   R  + + L S + ++  +    H         + +       L   Y +KL   R
Sbjct: 793 QMLQEREALQSELESALEDWATQVLISHCMDKAQQSYEQEKQPHMLELASSYVEKLTGER 852

Query: 256 KMDSMSRRTL--IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
                   TL  +G ++   +++   + + +   S+G    V + + LA A++ S     
Sbjct: 853 -------YTLDILGINKGVALINNNGERLELKFWSSGLADQVYLSLRLALAKVFSYQV-E 904

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
           +  ++LD+I    DE+++ +   ++ ++G   QI++    +SV+D 
Sbjct: 905 SLPIILDDILVRFDENRQRSALELLAELGKNQQIWLFTCQRSVYDM 950



 Score = 41.8 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR----A 59
          + IK +   EF  Y        D    +  G N  GKT++LE +  L  G   +      
Sbjct: 2  MNIKRIRFDEFGPYRDWSFTTGDNGVQLMYGPNESGKTSLLEGMRTLLFGGTHKAYGPMT 61

Query: 60 SYADVTRIGSPSFFSTFAR 78
             DV R G   +     +
Sbjct: 62 GALDVDRNGESYYIGRKGK 80


>gi|302878910|ref|YP_003847474.1| chromosome segregation protein SMC [Gallionella capsiferriformans
           ES-2]
 gi|302581699|gb|ADL55710.1| chromosome segregation protein SMC [Gallionella capsiferriformans
           ES-2]
          Length = 1156

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 97/322 (30%), Gaps = 37/322 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++     +    Q    VG NG GK+N+++A+ ++   S     R  S
Sbjct: 1   MRLSQIKLAGFKSFVDPTTIDLPGQIVGVVGPNGCGKSNVIDALRWVLGESRASALRGES 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQIND 107
             DV   GS      +  S     +   G         A+ISIK             IN 
Sbjct: 61  MQDVIFNGSARRKPVARASVELIFDNQSGKAGGQWASYAEISIK-RVLLRNGDSSYYINS 119

Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
             +R  D         L            + RI      E R FL+        ++R R 
Sbjct: 120 QKVRRRDITDIFLGTGLGARAYAIIEQGMISRIIEAKPEELRIFLEEAAG--VSKYRERR 177

Query: 160 IDF-ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
            +  +RL   R+ LL            +   +A+        R   +  L          
Sbjct: 178 RETAQRLNDTRDNLLRVDDILQEMDKQL-LHLAQQAAVAVQYRE--LETLRDTAQHLFWL 234

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                 +L+  GF         C  + E    +    +      R+       +L     
Sbjct: 235 LRREEAELARAGF---AAQIEKCRTELELKTAVLRENESALEMARSSHYLLSDELQAKQG 291

Query: 279 DKAITIAHGSTGEQ--KVVLVG 298
           D     +     EQ  K   + 
Sbjct: 292 DLYAANSDLVRLEQQIKHAALA 313


>gi|215487965|ref|YP_002330396.1| recombination and repair protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312965547|ref|ZP_07779778.1| DNA repair protein RecN [Escherichia coli 2362-75]
 gi|215266037|emb|CAS10452.1| recombination and repair protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312289795|gb|EFR17684.1| DNA repair protein RecN [Escherichia coli 2362-75]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 82/240 (34%), Gaps = 32/240 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALCWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       ++  LD         +       +  M  R  L
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTK--PEHQKFLLD--------GYANETSQLQE-MTARYHL 165

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             +   D +    +  + A    ++   +++ +N  +    E+ ++ +  + +L+ +G L
Sbjct: 166 WHQSCRDLAHHQQLSQERA-ARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQL 223


>gi|168985289|emb|CAQ08672.1| structural maintenance of chromosomes 1B [Homo sapiens]
          Length = 1161

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 62/155 (40%), Gaps = 16/155 (10%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
            ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3   HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQ 62

Query: 63  DVTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIRVVDELNKH 119
           ++   G+      S+ A V+ +        K   R  R      + ND ++     + + 
Sbjct: 63  ELI-HGAHIGKPISSSASVKIIYVEESGEEKTFARIIRGGCSEFRFNDNLVSRSVYIAEL 121

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLD 145
            +I  +V + + +               ER +F +
Sbjct: 122 EKIGIIVKAQNCLVFQGTVESISVKKPKERTQFFE 156


>gi|85374272|ref|YP_458334.1| ATPase [Erythrobacter litoralis HTCC2594]
 gi|84787355|gb|ABC63537.1| ATPase [Erythrobacter litoralis HTCC2594]
          Length = 554

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 63/198 (31%), Gaps = 29/198 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I       +L L F     +  G+ G GK+ +L+A+  +   R     + + + R
Sbjct: 2   LTRLSIRNIVLIEALELDFGRGLGVLTGETGAGKSILLDALGLVLGNR-----ADSGLVR 56

Query: 67  IGSP-----------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            G                   S     A +E  EG   + I+ + + D   +    +  V
Sbjct: 57  AGEDKASVTASFEFARLPSTLSAALDDADLEIEEGE-PLLIRRQLKADGGSKAFINDQPV 115

Query: 110 -IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER---L 165
            + ++ E+   L           + +      R  LDR          +    ++R    
Sbjct: 116 GVALLREIGGALVELHGQHDDRGLVN--PRGHRVLLDRYAGGDVEAVAQAWTAWQRASEA 173

Query: 166 MRGRNRLLTEGYFDSSWC 183
           +R     + E   +    
Sbjct: 174 LRKAQEEIEEAKAEQDLL 191


>gi|15239023|ref|NP_199671.1| ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME
          3); ATP binding / transporter [Arabidopsis thaliana]
 gi|75333958|sp|Q9FJL0|SMC4_ARATH RecName: Full=Structural maintenance of chromosomes protein 4;
          Short=AtSMC4; Short=SMC protein 4; Short=SMC-4;
          AltName: Full=Chromosome-associated protein C;
          Short=AtCAP-C
 gi|10177350|dbj|BAB10693.1| chromosome condensation protein [Arabidopsis thaliana]
 gi|332008311|gb|AED95694.1| structural maintenance of chromosomes protein 4 [Arabidopsis
          thaliana]
          Length = 1241

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 2  TNRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFR 57
          T R+ IK L +  F++Y        F    +  VG NG GK+N+++A+ F+     +  R
Sbjct: 21 TPRLYIKELVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMR 80

Query: 58 RASYADVTR 66
              +++  
Sbjct: 81 LNKVSELIH 89


>gi|116203627|ref|XP_001227624.1| hypothetical protein CHGG_09697 [Chaetomium globosum CBS 148.51]
 gi|88175825|gb|EAQ83293.1| hypothetical protein CHGG_09697 [Chaetomium globosum CBS 148.51]
          Length = 1690

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 15/129 (11%)

Query: 7   IKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
           I  L ++ F++YA +  +  F A  +  VG NG GK+N+++++ F+    GFR +     
Sbjct: 233 ITKLVLTNFKSYAGTQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASKMRQG 289

Query: 64  ----VTRIGSPSFFSTFARV-----EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
               +    +     T   V     E M+     S  +   D +  R    N+     +D
Sbjct: 290 KISALIHNSAQYPNLTHCEVAVHFCEVMDQPGGGSEVIPGSDMKISRKAFKNNSSQYYID 349

Query: 115 ELNKHLRIS 123
           + N +    
Sbjct: 350 DKNSNFTTV 358


>gi|254671011|emb|CBA07790.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
          Length = 349

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 2/113 (1%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M++   I+ L ++ F    +    F     + V +NG GKT++L+ +  L          
Sbjct: 1   MSSNQYIQSLELTNFTVLPNDTFEFSENLNVIVAENGCGKTHLLKILYSLLEVTS--NTK 58

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              +      SF      V   + L  +S +L+ R    +     N      +
Sbjct: 59  NRLLKTELQKSFADKLLNVFRPDSLGRLSKRLQGRGRTEIVLKLQNGTTHSRL 111


>gi|269797282|ref|YP_003311182.1| hypothetical protein Vpar_0215 [Veillonella parvula DSM 2008]
 gi|269093911|gb|ACZ23902.1| conserved hypothetical protein [Veillonella parvula DSM 2008]
          Length = 960

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 71/166 (42%), Gaps = 12/166 (7%)

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
           ++   R  + + L S + ++  +    H         + +       L   Y +KL   R
Sbjct: 788 QMLQEREALQSELESALEDWATQVLISHCMDKAQQSYEQEKQPHMLELASSYVEKLTGER 847

Query: 256 KMDSMSRRTL--IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
                   TL  +G ++   +++   + + +   S+G    V + + LA A++ S     
Sbjct: 848 -------YTLDILGINKGVALINNNGERLELKFWSSGLADQVYLSLRLALAKVFSYQV-E 899

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
           +  ++LD+I    DE+++ +   ++ ++G   QI++    +SV+D 
Sbjct: 900 SLPIILDDILVRFDENRQRSALELLAELGKNQQIWLFTCQRSVYDM 945



 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR----A 59
          + IK +   EF  Y     +  D    +  G N  GKT++LE +  L  G   +      
Sbjct: 1  MNIKRIRFDEFGPYRDWSFITGDNGVQLMYGPNESGKTSLLEGMRTLLFGDIHKAYGPMT 60

Query: 60 SYADVTRIGSPSFFSTFAR 78
             DV R G   +     +
Sbjct: 61 GALDVDRNGESYYIGRKGK 79


>gi|326536438|ref|YP_004300868.1| endonuclease subunit [Aeromonas phage 65]
 gi|40795444|gb|AAR90909.1| endonuclease subunit [Aeromonas phage 65]
          Length = 775

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/263 (17%), Positives = 85/263 (32%), Gaps = 53/263 (20%)

Query: 20  SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARV 79
            ++L    + T+  G NG GK+ ++EA+SFL  G+ +R+     +    +         V
Sbjct: 22  RVQLDLTEK-TLVTGTNGAGKSTMIEALSFLLYGKSYRKLKKEQLINQINKKNLLVSGEV 80

Query: 80  EGMEGLADISIKLETRDDRSVRCLQINDVVI---RVVDELNKHLRISWLVPSM----DRI 132
                L  I   ++    ++     I+   I       E  + L    L  S       I
Sbjct: 81  TIGNKLVHIERGMKPNVSKT-----IDGEPIPEAASATEYQRILEEDILNVSHESFKQLI 135

Query: 133 FSGL----------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE------- 175
             G             +RR  ++ ++          +    +L    N  L         
Sbjct: 136 VLGTAGYTPFMELKPEQRRTMVEDLLQ------LSVLGQMNKL---NNVELKRVSTAMDL 186

Query: 176 --------GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                        S  +SIE Q  +    +   +   I +L S +   + KEN   +   
Sbjct: 187 VDVEIGGLDNERKSILNSIEEQ-KKSNDDVIEHQSNQIRSLVSRVK--LSKENIEKLNTE 243

Query: 228 LTGFLDGK---FDQSFCALKEEY 247
           L G +D      D+   A++  Y
Sbjct: 244 LDGLVDIDSTVIDEVIKAIETNY 266


>gi|332008312|gb|AED95695.1| structural maintenance of chromosomes protein 4 [Arabidopsis
          thaliana]
          Length = 1244

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 2  TNRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFR 57
          T R+ IK L +  F++Y        F    +  VG NG GK+N+++A+ F+     +  R
Sbjct: 21 TPRLYIKELVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMR 80

Query: 58 RASYADVTR 66
              +++  
Sbjct: 81 LNKVSELIH 89


>gi|330964984|gb|EGH65244.1| ATP binding protein [Pseudomonas syringae pv. actinidiae str.
          M302091]
          Length = 451

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 13 SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
            +R +    + FD   TI +  NG GKT IL+A
Sbjct: 2  QNYRCFGEFEIDFDPHLTILIASNGGGKTTILDA 35


>gi|315605275|ref|ZP_07880321.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313092|gb|EFU61163.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 574

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + EY + L      D+ +  T +      L +   D++  +A  S G++  + + + L  
Sbjct: 140 EAEYDRVLAAMIARDAWTIDTRLEQTLEALALGGLDRSRPLASLSPGQRARLRLALIL-- 197

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
                        L+LDE + HLD D R  L R + D    + MT  D++  +
Sbjct: 198 -------VDRPEALVLDEPTNHLDADGREHLARTIDDWQGPVLMTSHDRAFIE 243


>gi|304382370|ref|ZP_07364872.1| DNA repair protein RecN [Prevotella marshii DSM 16973]
 gi|304336487|gb|EFM02721.1| DNA repair protein RecN [Prevotella marshii DSM 16973]
          Length = 552

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 68/202 (33%), Gaps = 21/202 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F     L + F    ++  G+ G GK+ IL AI  L    +  +  +     
Sbjct: 2   LKQLYIKNFTLIEELDIQFRNGFSVITGETGAGKSIILGAIGLLLGQRADSKTIKSGCDK 61

Query: 63  -------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VV 113
                  D++  G  SFFS     +      D  I+ E       R   IND+ ++   +
Sbjct: 62  CTIEAHFDLSGYGMDSFFS---ENDIDYDATDCIIRRELAASGKSRAF-INDIPVQLMQM 117

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNR 171
            EL + L    +      +       +   +D +    +    + +   ++ +  R    
Sbjct: 118 RELGEQLMD--IHSQHQNLLLNKEDFQLNVVDTIAENTELLAAYAKSYQNYRQTKRELEA 175

Query: 172 LLTEGYFDSSWCSSIEAQMAEL 193
           L       +     +  Q  EL
Sbjct: 176 LRESIRQANENEDFLRFQFKEL 197


>gi|222529581|ref|YP_002573463.1| ATP-dependent OLD family endonuclease [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222456428|gb|ACM60690.1| ATP-dependent OLD family endonuclease [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 652

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 67/176 (38%), Gaps = 25/176 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-------- 55
           + I  + I  ++++  S  ++ D +   F+G N  GK+ IL+A+    P           
Sbjct: 1   MYISKMRIRNYKSFLDSGEIMLDEKIFAFIGQNNTGKSTILDAVKVFFPNYKKQVDKKDI 60

Query: 56  FRRASYADVTRI---GSPSFF-------------STFARVEGMEGLADISIKLETRDDRS 99
            R  + + +  +   G  SFF                ++ +       + + +E   +++
Sbjct: 61  HRGINDSIIIEMWLGGVESFFENTRTDEVDRQVEKLLSKADDNSLYIKLVLNIEDGTNKN 120

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           +R     D        L K L    ++P++       + +R+ +L  ++  +D  +
Sbjct: 121 IRKYFDKDGEEIKEATLKKLLPELVVIPAIRDPEKESTADRKSYLRSLIDILDSEY 176


>gi|204929454|ref|ZP_03220528.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321173|gb|EDZ06373.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + FA  +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  TGATRADLCARFALKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               + LT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QQLTKPEQQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
           S   + A    +   AR ++ +     +  + Q+      +  L  +   + +       
Sbjct: 148 SYANEAAL--AQQMAARYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDFNPQAG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|169824452|ref|YP_001692063.1| exonuclease SbcC-like protein [Finegoldia magna ATCC 29328]
 gi|167831257|dbj|BAG08173.1| exonuclease SbcC homolog [Finegoldia magna ATCC 29328]
          Length = 527

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 11/152 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  + ++ F++Y         +  +  G +  GKT ++ A+S++     F   +   +
Sbjct: 1   MYITDIYLTNFQSYEQGHFELSEKVNLITGASDSGKTALIRALSWVL----FNDYTTDLL 56

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            R G       +  VE      + +  L  R   +      N+     + E     R   
Sbjct: 57  IRNG-------YNNVEVKIVFNNGNFILRGRKGNTNYYHIKNNADNEDIKEYVNFGREIP 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
                D +F  +++   ++   +   ++    
Sbjct: 110 TEIQNDFLFKKVNLLNEQYNILIASQLENSFL 141


>gi|166365925|ref|YP_001658198.1| hypothetical protein MAE_31840 [Microcystis aeruginosa NIES-843]
 gi|166088298|dbj|BAG03006.1| unknown protein [Microcystis aeruginosa NIES-843]
          Length = 648

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVF----DAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +++K + ++ ++ Y S  + F    D +  I  G+NG GKT+++ AI +   G
Sbjct: 3  LRLKQIRLTNWKCYPSQNITFNLHPDRKIQIIFGNNGHGKTSLMTAILWCLYG 55



 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 73/216 (33%), Gaps = 25/216 (11%)

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIE----AQMAELGVKINIARVEM----INAL 208
             +    R ++  N  + +      W    E     +M +  ++     +E+    +  L
Sbjct: 400 EEINQHIRQLKQENTGIDQDSVRQIWRKVGESGKNVEMIQERIERLQKEIEIKEKQLENL 459

Query: 209 SSLIMEYVQKENFPHIKLS------------LTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
              + E +  EN   + LS                ++   D S   + +  + +      
Sbjct: 460 RKEV-EILASENQTTLMLSNQVKMARGLKNATNELIEWHIDNSQKMINQVTSDRYLQVTN 518

Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
                R   I P  +  I     K +     S GE++     +  A    ++  T     
Sbjct: 519 KPEEYRGVEITPEYTLGIRTITGKLLNPDVLSAGEKE----ALAFAFITGLNQITDTCVP 574

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
           L++D    HLD++ +  +   + ++ SQ+ +  TD+
Sbjct: 575 LIMDTPFGHLDKEHQKNIINSLPNLNSQVIILATDR 610


>gi|149201859|ref|ZP_01878833.1| DNA repair protein RecN [Roseovarius sp. TM1035]
 gi|149144907|gb|EDM32936.1| DNA repair protein RecN [Roseovarius sp. TM1035]
          Length = 549

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 21/153 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +      L LVF     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRALEIRDMLIIDRLDLVFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--V 112
            G+                      E      D+ I          +   +ND  +   V
Sbjct: 57  RGADQGEVVAEFELRPDHPARAVLREAGLPDEDVLILRRVNSADGRKTAWVNDRRVSGEV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           + +L+  L           +        R  LD
Sbjct: 117 LRQLSDVLVELHGQQDDRGLL--DPKAHRDLLD 147


>gi|299531525|ref|ZP_07044931.1| DNA repair protein RecN [Comamonas testosteroni S44]
 gi|298720488|gb|EFI61439.1| DNA repair protein RecN [Comamonas testosteroni S44]
          Length = 585

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/285 (17%), Positives = 87/285 (30%), Gaps = 42/285 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + + +F    SL L +    T+  G+ G GK+ +L+A+  +   R     + A V
Sbjct: 1   MALKRIVLRDFVIVQSLDLDWQTGFTVLTGETGAGKSIMLDALQLVLGAR-----ADAQV 55

Query: 65  TRIGSPSFFS---------TFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI---- 110
            R G P                 +E      +  + L    D   R    IN        
Sbjct: 56  VREGCPQADICAEFDCPPHLHEWLEESGFAQEQDLLLRRVIDSLGRSRAWINGSPATATQ 115

Query: 111 ------RVVDELNKHLRISWLVPSMDRIF------SGLSMERRRFLDRMVFAIDPRHRRR 158
                 +++D   +H   S   P   R           +  +  +LD           + 
Sbjct: 116 LRHLGDQLIDIHGQHAWQSLTRPDAARAMLDTYGGIETAQLKSLWLDW--RQNHQALEQA 173

Query: 159 MIDFERLMRGRNRL------LTEGYFDSSWCSSIEAQMAELGVK--INIARVEMINALSS 210
           +   + L R R RL      L +    +     + AQ   L     +  +    +  L  
Sbjct: 174 LSAQDNLQRERERLQWQISELDKLSPRAEEWDELNAQHTRLSHAQTLMDSAQSCLQLLED 233

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
                       H  L     L+ +F QS   +      +L D R
Sbjct: 234 DDSGAATPLGRAHHLLQDQEHLEPEF-QSIADVLGSCVAQLHDAR 277


>gi|294155771|ref|YP_003560155.1| ABC transporter, ATP-binding protein [Mycoplasma crocodyli MP145]
 gi|291600351|gb|ADE19847.1| ABC transporter, ATP-binding protein [Mycoplasma crocodyli MP145]
          Length = 241

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 26/176 (14%)

Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGK-FDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
           N     I+    +  F   K  L    +   F  +F      Y+  L  G+K        
Sbjct: 58  NKWEGKILINGIENKFAQAKAKLGYMPENPIFPSNFTTYDYLYSFALLSGQKRSLAKENV 117

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
                  ++I     K  +    S+G++K +L+           +      +L++DE +A
Sbjct: 118 SKISELLNIIELLNRKPDSF---SSGQKKKILLA---------QSLINDPDLLIMDEPAA 165

Query: 325 HLDEDKRNALFRIVTDIGSQ---IFMTGTDKSVFDSLNETAKFMR----ISNHQAL 373
           +LD + R  LF I+ D+ +Q   IF++         L E ++F+     I   Q +
Sbjct: 166 NLDPNAREELFSILNDVKAQGKTIFIST------HELYEISRFVDYVTIIDKGQLI 215


>gi|288961586|ref|YP_003451896.1| chromosome segregation protein [Azospirillum sp. B510]
 gi|288913866|dbj|BAI75352.1| chromosome segregation protein [Azospirillum sp. B510]
          Length = 1153

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           ++   L +S F+++     LV +   T  VG NG GK+N++EA+ ++   +  +  R   
Sbjct: 1   MQFTRLRLSGFKSFVDATDLVIEPGMTGIVGPNGCGKSNLVEALRWVMGETSAKRMRGDD 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLA------DISIKLETRDDR-SVRCLQINDV 108
             DV   G+ S            V+     A         +++  R +R S    +IN  
Sbjct: 61  MDDVIFGGTSSRPARNLGEVTLAVDNRSRTAPAGFNDHDELEITRRIERGSGSDYRINGK 120

Query: 109 VIRVVD 114
           ++R  D
Sbjct: 121 LVRARD 126



 Score = 37.2 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K   ++  S GEQ +  + +  A  R     +  API +LDE+ A LDE        +
Sbjct: 1043 GKKLQVLSLLSGGEQALTALSLLFAVFR-----SNPAPICVLDEVDAPLDEANVGRFCDL 1097

Query: 338  VTDIGSQ 344
            V DI  Q
Sbjct: 1098 VEDIARQ 1104


>gi|255264215|ref|ZP_05343557.1| DNA repair protein RecN [Thalassiobium sp. R2A62]
 gi|255106550|gb|EET49224.1| DNA repair protein RecN [Thalassiobium sp. R2A62]
          Length = 545

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +      L L F+    +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2  LRGLDIRDMLIIDRLELEFEPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67 IGSPSFFST 75
           G+     T
Sbjct: 57 SGAEQGEVT 65


>gi|297561967|ref|YP_003680941.1| DNA repair protein RecN [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846415|gb|ADH68435.1| DNA repair protein RecN [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 569

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 75/238 (31%), Gaps = 35/238 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----F 56
           M   ++I+ L + +        L      T+  G+ G GKT ++  +  L  GR      
Sbjct: 1   MLEEVRIQGLGVID-----DAVLELSPGLTVVTGETGAGKTMVVTGLGLLFGGRADPQRV 55

Query: 57  RRASYADVT--RIGSPSFFSTFARVEGMEGLADISIKLETR----DDRSVRCLQINDVVI 110
           R  +   V   R+  PS     ARV    G  D  + + TR    + RS   +      +
Sbjct: 56  RPGADRAVVEGRLTVPSGGRVAARVLEAGGDIDDDVLILTRTVSAEGRSRATMGGRSAPV 115

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            ++  L   L          R+    S  +R  LDR  FA +P          + ++   
Sbjct: 116 SLLAYLADDLVAVHGQSDQQRLLR--SDRQRSSLDR--FAGEP--------LTKALKQYT 163

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
                    S+    +  Q           R +  + L     E    E  P     L
Sbjct: 164 VAYRRHREVSAELEELVEQ--------ARERAQEADMLRFGAEEIAAAEPRPGEDAEL 213


>gi|21885325|gb|AAL59731.1| unknown [Vibrio cholerae]
          Length = 160

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          IK +++S F++     L  D++    +G NG GK+++L+  S++S  
Sbjct: 13 IKRISVSAFKSLVDFELNLDSKFNCIIGLNGAGKSSVLQLFSYVSAL 59


>gi|325928159|ref|ZP_08189368.1| condensin subunit Smc [Xanthomonas perforans 91-118]
 gi|325541455|gb|EGD12988.1| condensin subunit Smc [Xanthomonas perforans 91-118]
          Length = 1167

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 85/290 (29%), Gaps = 46/290 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDV 108
             DV   GS +    + A VE +   +D +I  E                      +N  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDHTISGEFASFNEISVKRLVSRDGNSAYYLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI-------DPRHRRRMID 161
             R  D +      + L P    I              M+  I          +      
Sbjct: 121 KCRRRD-ITDLFLGTGLGPRSYSIIEQG----------MISQIIEARPEDLRVYLEEAAG 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             +    R    T              ++++L  +I       +  L     +  Q +  
Sbjct: 170 ISKYKERRKETETRIRHTRENLD----RLSDLREEITKQ----LAHLQRQARQAEQYQAL 221

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              +       D ++        +   + L +    +    + LI   R 
Sbjct: 222 QEER----RIKDAEWKALEYRGLDGRLQGLREKLNQEETRLQQLIAEQRD 267


>gi|319941628|ref|ZP_08015952.1| ATP/GTP-binding protein [Sutterella wadsworthensis 3_1_45B]
 gi|319804858|gb|EFW01712.1| ATP/GTP-binding protein [Sutterella wadsworthensis 3_1_45B]
          Length = 511

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KIK + I  FR Y   + + FD   T+ +G N +GK+ ILEA+
Sbjct: 1  MKIKSVKIKNFRGYRDEICVDFD-NLTVLIGKNDIGKSTILEAL 43


>gi|195592192|ref|XP_002085820.1| GD14975 [Drosophila simulans]
 gi|194197829|gb|EDX11405.1| GD14975 [Drosophila simulans]
          Length = 1034

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I  +   +F +Y+ +         +  G NG GK+ I+ AI  L  G       R AS 
Sbjct: 15  RIHSVYCKDFVSYSEITFHPKHYLNVLTGPNGSGKSTIVSAI-ILGLGGEPILLDRSASV 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD  +    S  +   RV G              +        +ND      + L 
Sbjct: 74  ADYIQSNKSSA-TIIVRVYGR-TPNTTETFRRIINSNGSSTFSVNDKDTSKKNFLA 127


>gi|146319305|ref|YP_001199017.1| ATPase involved in DNA repair [Streptococcus suis 05ZYH33]
 gi|146321508|ref|YP_001201219.1| DNA repair ATPase [Streptococcus suis 98HAH33]
 gi|145690111|gb|ABP90617.1| ATPase involved in DNA repair [Streptococcus suis 05ZYH33]
 gi|145692314|gb|ABP92819.1| ATPase involved in DNA repair [Streptococcus suis 98HAH33]
 gi|292558937|gb|ADE31938.1| DNA repair protein RecN [Streptococcus suis GZ1]
          Length = 556

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 103/279 (36%), Gaps = 43/279 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   TI  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 5   LLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGAR-----ATTDVIR 59

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+                       +G+E   ++ I+ E  ++ RSV  +    V + V
Sbjct: 60  HGAAKAEIEGLFSFENSRALEQILLEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSV 119

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFE----RLM 166
           + ++ ++L         + +       R    F +   +++  R++     +     R++
Sbjct: 120 LKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDRYQTTFDAYRSLRKRVL 179

Query: 167 -RGRNRLLTEGYFDSSWCSSIEAQMAEL----GVKINIARVEMINALS-----SLIMEYV 216
            + +N    +   +       E + A+L     +++N  R +++N        +     +
Sbjct: 180 EKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALL 239

Query: 217 QKENFPHI--------KLSLTGFLDGKFDQSFCALKEEY 247
             E+F  +         L      D  + Q   +L E Y
Sbjct: 240 DNEDFSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAY 278


>gi|154345017|ref|XP_001568450.1| structural maintenance of chromosome (SMC) family protein
          [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134065787|emb|CAM43561.1| putative structural maintenance of chromosome (SMC) family
          protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 1322

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 6  KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-------SPGRGFR 57
          KI  + +  F++Y     +      T  VG NG GK+N+++A+SF+       +     R
Sbjct: 4  KIHRVELENFKSYYGKGVIGPFKDFTCIVGPNGAGKSNLMDALSFVLSSSVTPARASSMR 63

Query: 58 RASYADVTRIGSPSF 72
            +  D     + + 
Sbjct: 64 GKALVDFIHRKAKAA 78


>gi|46370592|gb|AAS90118.1| condensin subunit [Tetrahymena thermophila]
          Length = 1359

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           +K + +  F++Y   ++   F  + T  VG NG GK+N++E++ F+   +    R     
Sbjct: 50  VKQIVLENFKSYQGRQVIGPFHKRFTSVVGPNGSGKSNLIESLLFVFGKKASWMRLKKLE 109

Query: 63  DVTRIGSPSFFSTFARVEGMEGLAD 87
            +    S       A VE       
Sbjct: 110 QLIHNSSKHQNVKKASVEVTFHEIR 134


>gi|257464224|ref|ZP_05628603.1| DNA repair protein recN [Fusobacterium sp. D12]
          Length = 555

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 92/263 (34%), Gaps = 36/263 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L F     +  G+ G GK+ IL  I+ L   +     +  D+ R
Sbjct: 2   LRELKIENLAIIEELDLEFQEGFVVLTGETGAGKSIILSGINLLIGEK-----ASVDMIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  S  +        +G+ DI+ K E    +    ++  +VV+R   + N   +I    
Sbjct: 57  DGENSLLA--------QGVFDITKKQEEELQKFGISIEDGEVVVRRQLDRNGKSKIYV-- 106

Query: 127 PSMDRIFSGLSMERRRFLDRM--VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
              + I   ++  R      +  V     +      + ++L+     L  +G        
Sbjct: 107 ---NNIRVNVTELREIMSSLVDIVGQHSHQMLLNKSNHQKLLDH--FLEKKGQEIKQEVE 161

Query: 185 SIEAQMAELG---VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF- 240
           S+  +   L     +I   R E +        E+ + +     KL L    D K ++ + 
Sbjct: 162 SLAKEYDRLDKRIKEIETHRQEALEK-----KEFYEYQLQEIEKLELQEGEDEKLEEEYK 216

Query: 241 -----CALKEEYAKKLFDGRKMD 258
                  +KE+    L+  R  +
Sbjct: 217 KIFHAGQIKEKLYATLYALRDGE 239


>gi|229594500|ref|XP_001023403.3| SMC family, C-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|225566824|gb|EAS03158.3| SMC family, C-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 1359

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           +K + +  F++Y   ++   F  + T  VG NG GK+N++E++ F+   +    R     
Sbjct: 50  VKQIVLENFKSYQGRQVIGPFHKRFTSVVGPNGSGKSNLIESLLFVFGKKASWMRLKKLE 109

Query: 63  DVTRIGSPSFFSTFARVEGMEGLAD 87
            +    S       A VE       
Sbjct: 110 QLIHNSSKHQNVKKASVEVTFHEIR 134


>gi|124002756|ref|ZP_01687608.1| chromosome segregation protein SMC [Microscilla marina ATCC
          23134]
 gi|123991984|gb|EAY31371.1| chromosome segregation protein SMC [Microscilla marina ATCC
          23134]
          Length = 1200

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
          + +K L I  F+++   + + F    T  VG NG GK+N+++AI   L     +  R   
Sbjct: 1  MLLKKLEIKGFKSFGDKVHIDFTTGVTGIVGPNGCGKSNVVDAIRWVLGEQRTKNLRSDK 60

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
           ++V   G+        R  G    A++S+  +   
Sbjct: 61 MSNVIFNGT--------RARGQGRTAEVSLTFDNNK 88


>gi|78184004|ref|YP_376439.1| chromosome segregation protein SMC [Synechococcus sp. CC9902]
 gi|78168298|gb|ABB25395.1| condensin subunit Smc [Synechococcus sp. CC9902]
          Length = 1204

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  + +  F+++  ++ +  +   T+  G NG GK+NIL+ + F   L+  RG R   
Sbjct: 2  VYINQVGLKHFKSFGGAMTIPLEEGFTVVTGPNGSGKSNILDGVLFCLGLANSRGMRADR 61

Query: 61 YADVTRIG 68
            D+   G
Sbjct: 62 LPDLINSG 69


>gi|332025475|gb|EGI65639.1| Structural maintenance of chromosomes protein 3 [Acromyrmex
          echinatior]
          Length = 1201

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 7  IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYAD 63
          +K + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R     
Sbjct: 2  LKQVIIQGFKSYREQTVVEPFDPRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLRPDQRQ 61

Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLET 94
                       A VE +   +D  + ++ 
Sbjct: 62 GLLHEGTGPRVISAHVEIIFDNSDGRLPIDK 92



 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 277  YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
            +  +   +   S G++ +V + +  A           AP  L DEI   LD   R A+  
Sbjct: 1089 HRGEMREMNQLSGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVAD 1143

Query: 337  IVTDIGS--QIFMTGTDKSVFDSLNETAKFMRIS 368
            ++ ++ S  Q F+T T     + L+   KF  + 
Sbjct: 1144 MIHELSSDAQ-FITTT--FRPELLHHANKFYGVK 1174


>gi|294665958|ref|ZP_06731222.1| Chromosome segregation protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604261|gb|EFF47648.1| Chromosome segregation protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1167

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 85/290 (29%), Gaps = 46/290 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDV 108
             DV   GS +    + A VE +   +D +I  E                      +N  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDHTISGEFASFNEISVKRLVSRDGNSAYYLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI-------DPRHRRRMID 161
             R  D +      + L P    I              M+  I          +      
Sbjct: 121 KCRRRD-ITDLFLGTGLGPRSYSIIEQG----------MISQIIEARPEDLRVYLEEAAG 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             +    R    T              ++++L  +I       +  L     +  Q +  
Sbjct: 170 ISKYKERRKETETRIRHTRENLD----RLSDLREEITKQ----LAHLQRQARQAEQYQAL 221

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              +       D ++        +   + L +    +    + LI   R 
Sbjct: 222 QEER----RIKDAEWKALEYRGLDGRLQGLREKLNQEETRLQQLIAEQRD 267


>gi|260495232|ref|ZP_05815360.1| ABC transporter [Fusobacterium sp. 3_1_33]
 gi|260197289|gb|EEW94808.1| ABC transporter [Fusobacterium sp. 3_1_33]
          Length = 414

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ-----HTIFVGDNGVGKTNILEAI 47
          +KI+ ++I   +    L L F          +  G NG GKT ILEAI
Sbjct: 1  MKIEKVHIKNVKGIKDLELSFKKDDKILDLIVLAGVNGSGKTTILEAI 48


>gi|160878902|ref|YP_001557870.1| ATP-dependent OLD family endonuclease [Clostridium
          phytofermentans ISDg]
 gi|160427568|gb|ABX41131.1| ATP-dependent endonuclease of the OLD family-like protein
          [Clostridium phytofermentans ISDg]
          Length = 642

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++IK ++I  F++   L++    +  I VG N  GKT IL+AI
Sbjct: 1  MQIKEISIKNFKSIRKLQMTNIEKAFIIVGKNSTGKTVILDAI 43


>gi|39997162|ref|NP_953113.1| DNA repair protein RecN [Geobacter sulfurreducens PCA]
 gi|39984052|gb|AAR35440.1| DNA repair protein RecN [Geobacter sulfurreducens PCA]
 gi|298506175|gb|ADI84898.1| DNA repair ATPase RecN [Geobacter sulfurreducens KN400]
          Length = 558

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 82/263 (31%), Gaps = 46/263 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I       SL + FD   T+  G+ G GK+ I++A++ +  GR     + A++ R
Sbjct: 2   LTDLSIRNLAIIDSLHVSFDRGLTVLTGETGAGKSIIIDAVNLIMGGR-----ASAELVR 56

Query: 67  IGSPSFFSTFAR-------------VEGMEGLADISIKLETRDDRSVRCLQIND-VVIRV 112
            G                         G++   ++ +K         R         + +
Sbjct: 57  TGEEEATVEALFSLPTDAPLGQRLAAMGLDCDGELLVKRVVSRSGRNRVFIGGGLSTLAM 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRN 170
           + ++++ L   +       +         R LD      ++   +      +        
Sbjct: 117 LSDISRELVNIYGQHESQTLLR--PENHLRLLDGFAGLDSLRADYAAIFDRYR------- 167

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                     +    ++      G +    R+++   LS  + E       P  + +L G
Sbjct: 168 -------ETEARLRELDE-----GEREAARRLDL---LSFQVEEIHAAALAPGEEEALAG 212

Query: 231 FLDGKFDQS-FCALKEEYAKKLF 252
             +   +        EE  + L+
Sbjct: 213 ERELLVNAERLSRGSEEAYEALY 235


>gi|78047220|ref|YP_363395.1| chromosome segregation protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78035650|emb|CAJ23341.1| Chromosome segregation protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 1167

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 85/290 (29%), Gaps = 46/290 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDV 108
             DV   GS +    + A VE +   +D +I  E                      +N  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDHTISGEFASFNEISVKRLVSRDGNSAYYLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI-------DPRHRRRMID 161
             R  D +      + L P    I              M+  I          +      
Sbjct: 121 KCRRRD-ITDLFLGTGLGPRSYSIIEQG----------MISQIIEARPEDLRVYLEEAAG 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             +    R    T              ++++L  +I       +  L     +  Q +  
Sbjct: 170 ISKYKERRKETETRIRHTRENLD----RLSDLREEITKQ----LAHLQRQARQAEQYQAL 221

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              +       D ++        +   + L +    +    + LI   R 
Sbjct: 222 QEER----RIKDAEWKALEYRGLDGRLQGLREKLNQEETRLQQLIAEQRD 267


>gi|317061744|ref|ZP_07926229.1| DNA repair protein recN [Fusobacterium sp. D12]
 gi|313687420|gb|EFS24255.1| DNA repair protein recN [Fusobacterium sp. D12]
          Length = 560

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/263 (18%), Positives = 92/263 (34%), Gaps = 36/263 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L F     +  G+ G GK+ IL  I+ L   +     +  D+ R
Sbjct: 7   LRELKIENLAIIEELDLEFQEGFVVLTGETGAGKSIILSGINLLIGEK-----ASVDMIR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  S  +        +G+ DI+ K E    +    ++  +VV+R   + N   +I    
Sbjct: 62  DGENSLLA--------QGVFDITKKQEEELQKFGISIEDGEVVVRRQLDRNGKSKIYV-- 111

Query: 127 PSMDRIFSGLSMERRRFLDRM--VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
              + I   ++  R      +  V     +      + ++L+     L  +G        
Sbjct: 112 ---NNIRVNVTELREIMSSLVDIVGQHSHQMLLNKSNHQKLLDH--FLEKKGQEIKQEVE 166

Query: 185 SIEAQMAELG---VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF- 240
           S+  +   L     +I   R E +        E+ + +     KL L    D K ++ + 
Sbjct: 167 SLAKEYDRLDKRIKEIETHRQEALEK-----KEFYEYQLQEIEKLELQEGEDEKLEEEYK 221

Query: 241 -----CALKEEYAKKLFDGRKMD 258
                  +KE+    L+  R  +
Sbjct: 222 KIFHAGQIKEKLYATLYALRDGE 244


>gi|313893791|ref|ZP_07827357.1| hypothetical protein HMPREF9199_0266 [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313441355|gb|EFR59781.1| hypothetical protein HMPREF9199_0266 [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 960

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/214 (19%), Positives = 92/214 (42%), Gaps = 30/214 (14%)

Query: 171 RLLTEGYFDSSWCSSI---EAQMAELGVKI---NIARVEMINALSSLIMEYVQKENFPHI 224
           R L EG  D +W   +   E +MA +  K+      R +++ A+ +L  +  Q++     
Sbjct: 735 RRLREGNKD-NWLDELAHSEREMASIEDKLATLYERRGQIVEAMRALGSDQEQQQML-QE 792

Query: 225 KLSLTGFLDGKFD----------------QSFCALKEEYAKKLFDG---RKMDSMSRRTL 265
           + +L   L+   +                QS+   K+ +  +L      R    +    +
Sbjct: 793 REALQSELETALEDWATQVLMSHCMDKAQQSYEQEKQPHMLELASSYIERLTGGIYTFDI 852

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
           +G +    +V+   + + +   S+G    V + + LA A++ S     +  ++LD+I   
Sbjct: 853 LGINEGIALVNGNGERLELKFWSSGLADQVYLALRLALAKVFSYQV-ESLPIILDDILVR 911

Query: 326 LDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
            DE+++ +   ++ +IG   QI++    +SV+D 
Sbjct: 912 FDENRQRSALELLAEIGKNQQIWLFTCQRSVYDM 945



 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR----A 59
          + IK +   EF  Y        +    +  G N  GKT++LE +  L  G   +      
Sbjct: 1  MNIKRIRFDEFGPYRDWSFTTGNNGVQLMYGPNESGKTSLLEGMRTLLFGGTHKAYGPMN 60

Query: 60 SYADVTRIGSPSFFSTFAR 78
             DV R G   +     R
Sbjct: 61 GALDVERNGESYYIGRKGR 79


>gi|312875967|ref|ZP_07735956.1| DNA repair protein RecN [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797165|gb|EFR13505.1| DNA repair protein RecN [Caldicellulosiruptor lactoaceticus 6A]
          Length = 551

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 118/327 (36%), Gaps = 56/327 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I        L + FD   TI  G+ G GK+ I++++S L   + F+     ++ R
Sbjct: 2   LKRLLIENIAIIDRLDIEFDKGLTILTGETGAGKSIIIDSLSLLLGTK-FK----KEIIR 56

Query: 67  IGS-PSFFSTFARVE---GMEGLADISIKLETR--------DDRSVRCLQIN-------- 106
            G   +  S    +E    +E L  + I LE                  ++N        
Sbjct: 57  TGCTKACVSAVFEIEKKSAIERLTQMGISLEDNFLIVSREVYSSGKNICRVNNQFVLLST 116

Query: 107 -DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
              + + + E++       L     ++         RF  + +  +   ++    D++  
Sbjct: 117 LREITKHIFEIHGQNETHLLNDKRIQLLYID-----RFCGKELEELKAEYKDLYHDYQEK 171

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGV---KI-----NIARVEMINALSSLIMEYVQ 217
            R   +++T+          +  Q+ E+     +I        R E+I   +S  +++  
Sbjct: 172 KRLYEQIITKEEERERQLDLLNYQINEIESVKPQIGEDTELEKRKEIIQ--NSWKLKHNS 229

Query: 218 KENFPHIKLSLTGFLD---------GKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLI 266
           ++    I  ++   L+          +FD+ F A+ E      ++   +      +    
Sbjct: 230 EKILDTINNTIIDSLEMCIRLANENSRFDKEFEAISERLNNVYYEIEDISFSISKKSQSY 289

Query: 267 GPHRSDL--IVDYCDK--AITIAHGST 289
             ++ ++  IVD  DK   +   +GST
Sbjct: 290 EVNKDEIEQIVDRLDKINRLKKKYGST 316


>gi|167762352|ref|ZP_02434479.1| hypothetical protein BACSTE_00706 [Bacteroides stercoris ATCC
           43183]
 gi|167699995|gb|EDS16574.1| hypothetical protein BACSTE_00706 [Bacteroides stercoris ATCC
           43183]
          Length = 553

 Score = 48.0 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 62/198 (31%), Gaps = 17/198 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F +  ++  G+ G GK+ IL AI  L    +  +  RR +  
Sbjct: 2   LRSLYIQNYALIKKLDIDFGSGFSVITGETGAGKSIILGAIGLLLGQRADVKSIRRGAAK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            V   R   +      F     +E   +  ++ E       R   IND       + EL 
Sbjct: 62  CVIEARFEIAGYGMQPFFEENELEYEDECILRREVYASGKSRAF-INDTPASLVQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRGRNRL 172
           + L           +       +   LD +    D         R     ++ +     L
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLSVLDLLAHDEDELSKYRSLHREWKQVQQDLEQLVAL 178

Query: 173 LTEGYFDSSWCSSIEAQM 190
             +   D  +      Q+
Sbjct: 179 SEKNKADEDYIRFQLEQL 196


>gi|317011791|gb|ADU85538.1| hypothetical protein HPSA_07985 [Helicobacter pylori
          SouthAfrica7]
          Length = 363

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          IK + I  ++N+  L++        F G N   KTN+LEA+  
Sbjct: 2  IKSVEIENYKNFKHLKMENFKLINFFTGQNDTSKTNLLEALYI 44


>gi|319744557|gb|EFV96910.1| DNA repair protein RecN [Streptococcus agalactiae ATCC 13813]
          Length = 552

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 77/210 (36%), Gaps = 35/210 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIEEISLNFETGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASVEVIR 56

Query: 67  IGS-----PSFFST--------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
            G+       FFS              G+E   ++ I+ E          +IN  ++   
Sbjct: 57  HGANKAEIEGFFSVEKNQSLVQLLEENGIELADELIIRREIFQ-NGRSVSRINGQMVNLS 115

Query: 112 --------VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                   +VD   +H +   + P+M  +          F +     I  R++     + 
Sbjct: 116 TLKAVGHYLVDIHGQHDQEELMKPNMHILMLD------EFGNTEFNVIKERYQSLFDAYR 169

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +L +           + S    +E Q+AE+
Sbjct: 170 QLRKRVLDKQKNEQENKSRIEMLEFQIAEI 199


>gi|331703475|ref|YP_004400162.1| chromosome segregation ATPase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|256383895|gb|ACU78465.1| chromosome segregation protein SMC [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|256384726|gb|ACU79295.1| chromosome segregation protein SMC [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|296455977|gb|ADH22212.1| chromosome segregation protein SMC [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
 gi|328802030|emb|CBW54184.1| Chromosome segregation ATPase [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 988

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 81/238 (34%), Gaps = 42/238 (17%)

Query: 7   IKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K +  S F+++A L +  F+   T  VG NG GK+NI +AI +       +  R +   
Sbjct: 4   LKQIRASGFKSFADLTVMDFNYDMTGVVGPNGSGKSNITDAIRWTLGEQSTKTLRGSKMD 63

Query: 63  DVTRIGSPS------FFSTFARVEGMEGLADIS---IKLETRDDRSVR--CLQINDVVIR 111
           D+   G+           T       E  + I    +++  + D++ R     IN    +
Sbjct: 64  DIVFSGNNEKKAADVAEVTLVFNNTHENFSSIKSDVVEITRKFDKNTRESEFYINSTKCK 123

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
           + D  +  L    L  S   I S              +R   D             +  +
Sbjct: 124 LKDVQSIALEA-GLTRSSIAIISQGTVANFTESKPETKREIFDDAAG---------VSKY 173

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           ++  +     L +   + +    I         K    R+  +   S   +EY QK N
Sbjct: 174 KKRKKETLSKLEKATENLTRLEDI--------AKEISRRLPNLERQSKKALEYQQKVN 223


>gi|240147381|ref|ZP_04745982.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257200421|gb|EEU98705.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 164

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  ++I  F+    +++       I VG N  GKT ILEAI   + G     A   D
Sbjct: 1  MKLTGIHIKNFKAIHEMKIDSIENALILVGQNNTGKTTILEAIR-AAFGDYHISAEDFD 58


>gi|298377208|ref|ZP_06987162.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298266192|gb|EFI07851.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 516

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + IK + +  FR Y S   V  +  T FVG N +GK+ ILEA+
Sbjct: 1  MLIKSVTLKNFRGYRSETTVLFSNLTTFVGRNDIGKSTILEAL 43


>gi|297261296|ref|XP_002798460.1| PREDICTED: structural maintenance of chromosomes protein 1B-like
          isoform 2 [Macaca mulatta]
          Length = 1160

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3  HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKTINLRVKNIQ 62

Query: 63 DVTR 66
          ++  
Sbjct: 63 ELIH 66


>gi|291616611|ref|YP_003519353.1| Hypothetical Protein PANA_1058 [Pantoea ananatis LMG 20103]
 gi|291151641|gb|ADD76225.1| Hypothetical Protein PANA_1058 [Pantoea ananatis LMG 20103]
          Length = 370

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK +++  FR+   L L    Q  +  G NG GK+N+ +A+  L
Sbjct: 3  MTIKQIHLRGFRSVRDLTLPLQ-QLNVVSGPNGCGKSNLYKAVRLL 47


>gi|237755996|ref|ZP_04584580.1| DNA repair protein RecN [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691836|gb|EEP60860.1| DNA repair protein RecN [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 532

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 72/194 (37%), Gaps = 17/194 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I +F     + +    +  +F G+ GVGK+ I++AISF+   RG           
Sbjct: 2   LSEIRIKKFLYLKDIEISLSDRLNVFTGETGVGKSLIIDAISFVLGERG----------S 51

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHLRISW 124
                +       +       I I L  +         +N   +   ++DE++++L    
Sbjct: 52  FEKNDYVELMFEADNQYAEDGILI-LARQVKNGKNIYYLNGRKVVKSIIDEISQNLIEIH 110

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDP--RHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
              +  ++F   +  +R   D+     D     ++   ++ ++ +    +L++   +   
Sbjct: 111 GQHASQKLF--DADYQREIFDKFAKVEDKLEEFQKLYSEYIKVKKEYEDILSKQAENQRK 168

Query: 183 CSSIEAQMAELGVK 196
              +  Q+ EL   
Sbjct: 169 IDFLTFQINELSSA 182


>gi|194751397|ref|XP_001958013.1| GF23727 [Drosophila ananassae]
 gi|190625295|gb|EDV40819.1| GF23727 [Drosophila ananassae]
          Length = 1034

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 7/116 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I+ +   +F +Y+ +         +  G NG GK+ I+ AI  L  G       R +S 
Sbjct: 15  RIQSVYCKDFVSYSEITFHPKHYLNVLTGPNGSGKSTIVSAI-ILGLGGEPILLDRSSSV 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD  +    S  +   RV G       + +    +        +N       + L 
Sbjct: 74  ADYIQSNKTSA-TIVVRVYGRTAKTTEAFR-RIINSNGSSIYSVNGENTTKKNFLA 127


>gi|158422835|ref|YP_001524127.1| putative GTP-binding protein [Azorhizobium caulinodans ORS 571]
 gi|158329724|dbj|BAF87209.1| putative GTP-binding protein [Azorhizobium caulinodans ORS 571]
          Length = 874

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 14/96 (14%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          ++I+ L+I  FR + +  +   F     +    N  GK+ +LEA+          RA+  
Sbjct: 1  MRIRRLSIENFRKFRAPVVLDGFSDGLNLVCEPNESGKSTVLEAL----------RAALF 50

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98
          +  R  S S      R  G +    ++++ E    R
Sbjct: 51 E--RYNSKSGRIRSFRPHGDDVAPTVTVEFEVAGGR 84


>gi|83647419|ref|YP_435854.1| chromosome segregation protein SMC [Hahella chejuensis KCTC 2396]
 gi|83635462|gb|ABC31429.1| chromosome segregation protein SMC [Hahella chejuensis KCTC 2396]
          Length = 1162

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVHFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKHLRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-IND 107
             DV   GS +            F +    ++G     +  I ++ +  R  + L  +N 
Sbjct: 61  MTDVIFNGSNTRKPVGQASIELIFDNAGGVLQGEFSRYN-EISVKRKVTRDAQSLYFLNG 119

Query: 108 VVIRVVD 114
              R  D
Sbjct: 120 NKCRRKD 126


>gi|78188566|ref|YP_378904.1| hypothetical protein Cag_0588 [Chlorobium chlorochromatii CaD3]
 gi|78170765|gb|ABB27861.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 397

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 59/384 (15%), Positives = 120/384 (31%), Gaps = 52/384 (13%)

Query: 7   IKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFL-SPGRGFRRASYADV 64
           I  + +    ++AS        +  +F+G NG GK+N++EA+  + +  R      +  V
Sbjct: 2   IHSIRLDNLLSFASGNPTLPLQKLNVFIGTNGAGKSNLIEALDLVRATPRSPSNNDFQRV 61

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
              G       +      +G  D    +E   D            IR +       +   
Sbjct: 62  ISRGGTIMEWIW------KGSPDTPATIELIMDNPYNSHTNEKQPIRHLFSFKGEQQRVI 115

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
            V   + I +                 +P    R  + + ++        +   D     
Sbjct: 116 FV--DEIIENESPYH---------SNNEPYFYYRSYNGKPVINSAIAGERKLQRD----- 159

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEY--VQKENFPHIKLSLTGFLDGKFDQSFCA 242
           SI  +++ L  + +  +   I  L+ +  E+   ++  F    +        + D     
Sbjct: 160 SINEELSILAQRRDPEQYPEITKLAEIYEEFRLYREWTFGRNTI---FRNPQRSDLRNDR 216

Query: 243 LKEEYAKK-LFDGR---KMDSMSRRTLIG-----PHRSDLIVDYCDKAITIAHGSTGEQK 293
           L+E+++ K LF  R            L G         D  +      + +     GE  
Sbjct: 217 LEEDFSNKGLFLNRLKTHKPKAKTAILEGLKDLYQGIDDFNISIEGGTVQVFFT-EGE-- 273

Query: 294 VVLV-GIFLAHARLISNTTGF-------APILLLDEISAHLDEDKRNALFRIV--TDIGS 343
              +    L+   L               P+L ++E    L  D    L  ++      +
Sbjct: 274 -FSIPATRLSDGTLRYLCLLALLCDPEPPPLLCIEEPELGLHPDIIPKLADLLIDASQRT 332

Query: 344 QIFMTGTDKSVFDSLNETAKFMRI 367
           QI +T     + D+L E  + + +
Sbjct: 333 QIIVTTHSDILIDALTEIPESVVV 356


>gi|330829409|ref|YP_004392361.1| putative ATP-dependent endonuclease of the OLD family [Aeromonas
           veronii B565]
 gi|328804545|gb|AEB49744.1| Predicted ATP-dependent endonuclease of the OLD family [Aeromonas
           veronii B565]
          Length = 545

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 61/377 (16%), Positives = 126/377 (33%), Gaps = 71/377 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FR    L L  D Q T+ +G+N  GK+++L A+  L           A+ 
Sbjct: 1   MFLERIEVKGFRGINRLSLGLD-QTTVLIGENTWGKSSLLRALWCLL-------GQDAEP 52

Query: 65  TRIGSPSF-------FSTFARVEGMEGLADISIKLETRDDRSVR--------CLQINDVV 109
            +  +  F        +    ++ +   ++   ++     R  R          + + + 
Sbjct: 53  YQFTAEDFHQPEDPELAPARHLQLVLTFSEHRPQMCQHSRRLARLCPSWVLHKDKFHRIH 112

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            R   EL     +  +   +D +   L +     L  ++  ++P          RL   R
Sbjct: 113 YRASAELQADGSVLTIHDFLDGVGKSLPIANTHELVCLLITMNPVF--------RLRDAR 164

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
                 G     W    E +++EL  K+                +  Q+   P +K +L 
Sbjct: 165 TA--RNGVETLQWGDLSEHRLSELADKLI---------------DEPQRIGEPELKEAL- 206

Query: 230 GFLDGKFDQSFCALKEEYAKKL-----FDGRKMDSMSR-RTLIGPHRSDLIVDYCDKAIT 283
                   Q+   L + Y   L         + D ++R  TL  P     ++ + D    
Sbjct: 207 --------QAVRQLMDHYFNALAPIKNKPRSQRDIINRPMTLRNPGNLHTLLRHADNR-- 256

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISN-TTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
                T +  +  +   L  AR       G  PI++L++  + L        + ++  + 
Sbjct: 257 -----TLQLAMAGMAATLLQARGNRELEEGARPIMILEDPESRLHPTMLALAWGLLEQLP 311

Query: 343 SQIFMTGTDKSVFDSLN 359
            Q  +T     +  SL 
Sbjct: 312 GQKLLTTNSGDLLSSLP 328


>gi|313888329|ref|ZP_07822000.1| RecF/RecN/SMC N-terminal domain protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
 gi|312845732|gb|EFR33122.1| RecF/RecN/SMC N-terminal domain protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
          Length = 483

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          IK + ++ F+++    + FD    + +G++  GKT IL AI
Sbjct: 4  IKNVELTNFQSHNHTEIEFDRGLNVILGNSDAGKTAILRAI 44


>gi|224025067|ref|ZP_03643433.1| hypothetical protein BACCOPRO_01801 [Bacteroides coprophilus DSM
          18228]
 gi|224018303|gb|EEF76301.1| hypothetical protein BACCOPRO_01801 [Bacteroides coprophilus DSM
          18228]
          Length = 516

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + IK + +  FR Y S   V  +  T FVG N +GK+ ILEA+
Sbjct: 1  MLIKSVTLKNFRGYRSETTVLFSNLTTFVGRNDIGKSTILEAL 43


>gi|167757406|ref|ZP_02429533.1| hypothetical protein CLORAM_02956 [Clostridium ramosum DSM 1402]
 gi|167703581|gb|EDS18160.1| hypothetical protein CLORAM_02956 [Clostridium ramosum DSM 1402]
          Length = 651

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 92/267 (34%), Gaps = 32/267 (11%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KI  + ++ F+   +L L FD  +    GDNG GKT I+ A  +L   +     +     
Sbjct: 4   KINQMKLTNFQGIRNLELNFDESNKSIRGDNGTGKTTIINAYYYLLTDKPSVTMADY--- 60

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDD--RSVRCLQINDVVIRVVDELNKHLRIS 123
              SP        +  +E   + +  +       +     +          EL  +    
Sbjct: 61  ---SPKTKGVEGDLHNLEHTVECTFDVNGIVKVLKKTYKEKWTQKRGNKNKELTGNT--- 114

Query: 124 WLVPSMDRIFSGLSMERRR----FLDRMVFA--IDPRHRRRMIDFERLMRGRNRLLTEGY 177
            +   +D +        R     F  R +    I P +   ++ +    + R + LT+  
Sbjct: 115 -ISYEVDGLPVKEKDYNREIEELFGPREIIQMLISPTYFSDVLSW----KDRRKYLTDIC 169

Query: 178 FDSSWCSSIE--AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
            D +    I   A++  L  +I +         S      + K N   I   L   +  +
Sbjct: 170 GDYTDEEIINVVAELEPL-NEILLLNGSTTQKRSIDDQIKLLKTNMSSINKELK-QIPSR 227

Query: 236 FDQSFCALKE------EYAKKLFDGRK 256
            D++  A+ E      +Y  +LF+ RK
Sbjct: 228 IDEAERAIPETAGSKADYENQLFEVRK 254


>gi|281366584|ref|NP_730660.3| Smc5, isoform F [Drosophila melanogaster]
 gi|272455267|gb|AAN12180.3| Smc5, isoform F [Drosophila melanogaster]
          Length = 1001

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I  +   +F +Y+ +         +  G NG GK+ I+ AI  L  G       R AS 
Sbjct: 15  RIHSVYCKDFVSYSEITFHPKHYLNVLTGPNGSGKSTIVSAI-ILGLGGEPILLDRSASV 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD  +    S  +   RV G              +   +    +ND      + L 
Sbjct: 74  ADYIQSNKTSA-TIIVRVYGR-TPNTTETFRRIINSNGLSTFSVNDKDTSKKNFLA 127


>gi|241952959|ref|XP_002419201.1| structural maintenance of chromosomes protein, putative; subunit of
           the multiprotein Cohesin complex required for sister
           chromatid cohesion in mitotic cells, putative [Candida
           dubliniensis CD36]
 gi|223642541|emb|CAX42790.1| structural maintenance of chromosomes protein, putative [Candida
           dubliniensis CD36]
          Length = 1232

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 5   IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F+ Y +   +        + VG NG GK+N   AI   LS          
Sbjct: 1   MYIKKIIIQGFKTYKNTTTIDLLSPHCNVVVGRNGSGKSNFFAAIRFVLSDAYTHMSREE 60

Query: 62  AD-VTRIGSPSFFSTFARV-----EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
              +   GS +  S +  +     +G   +    I +            ++       D
Sbjct: 61  RQGLIHEGSGTVMSAYVEIIFDNADGRFPINKPEISIRRTIGLKKDDYSLDGKSATRSD 119


>gi|328699504|ref|XP_003240955.1| PREDICTED: structural maintenance of chromosomes protein 3-like
          [Acyrthosiphon pisum]
          Length = 1204

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
          + IK + I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R   
Sbjct: 1  MFIKQVIIHGFKSYREQTVVEPFDKRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ 60

Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLET 94
                         A VE +    D  + ++ 
Sbjct: 61 RQALLHEGTGPKVNSAYVEIIFDNTDNRLPIDK 93



 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
            S G++ +V +G+  A           AP  L DEI   LD   R ++  ++ ++ S+  F
Sbjct: 1103 SGGQKSLVALGLIFA-----IQKCDPAPFYLFDEIDQALDPQHRKSVADMIHEMSSEAQF 1157

Query: 347  MTGTDKSVFDSLNETAKFMRIS 368
            +T T     + L    KF  + 
Sbjct: 1158 ITTT--FRPELLQHAHKFYGVK 1177


>gi|33589338|gb|AAQ22436.1| RE65864p [Drosophila melanogaster]
          Length = 1034

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I  +   +F +Y+ +         +  G NG GK+ I+ AI  L  G       R AS 
Sbjct: 15  RIHSVYCKDFVSYSEITFHPKHYLNVLTGPNGSGKSTIVSAI-ILGLGGEPILLDRSASV 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD  +    S  +   RV G              +   +    +ND      + L 
Sbjct: 74  ADYIQSNKTSA-TIIVRVYGR-TPNTTETFRRIINSNGLSTFSVNDKDTSKKNFLA 127


>gi|145219448|ref|YP_001130157.1| hypothetical protein Cvib_0637 [Prosthecochloris vibrioformis DSM
           265]
 gi|145205612|gb|ABP36655.1| conserved hypothetical protein [Chlorobium phaeovibrioides DSM 265]
          Length = 402

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF-----RR 58
           +++ L +  +R    +        T+ +G NG GK+ + +  +FLS     G      RR
Sbjct: 10  RVESLRVQNYRALKDITFKQLTPLTVLLGPNGSGKSTVFDVFAFLSECFTEGLRKAWDRR 69

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97
             + ++             +         I+  LE  ++
Sbjct: 70  GRFRELRSRDCKGPIVIELQYRERIHTPLITYHLEIDEE 108


>gi|237735519|ref|ZP_04566000.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381264|gb|EEO31355.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 444

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 6  KIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          KI  L +   +   ++++  +    T+  G N  GKT++L++I++   G  F+ ++ A 
Sbjct: 4  KINSLELENVKRIKAVKVEPNQNGLTVIGGRNNQGKTSVLDSIAWALGGNKFKPSNAAR 62


>gi|229031245|ref|ZP_04187251.1| hypothetical protein bcere0028_32980 [Bacillus cereus AH1271]
 gi|228730003|gb|EEL80977.1| hypothetical protein bcere0028_32980 [Bacillus cereus AH1271]
          Length = 728

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
          +KIK + +S +R   ++    +   ++ +G N  GKT++L A
Sbjct: 1  MKIKKIKVSNYRLLKNMNFDMEENLSLIIGKNNCGKTSLLSA 42


>gi|225850428|ref|YP_002730662.1| DNA repair protein RecN [Persephonella marina EX-H1]
 gi|225645150|gb|ACO03336.1| DNA repair protein RecN [Persephonella marina EX-H1]
          Length = 543

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 64/192 (33%), Gaps = 13/192 (6%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++ +  +NI +F     + +  D    +F G+ GVGK+ I++A+ F+   +G        
Sbjct: 12  KM-LTQINIKKFLYMEDISIDLDEGLNVFTGETGVGKSLIIDAVEFVLGKKG-------- 62

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                  S+          +   D ++ +            IN     +         + 
Sbjct: 63  --NFSDGSYVELVFENVDNQYSEDGTLIISREIKGGRSAYYINGRRSTLSTVKEASEGVV 120

Query: 124 WLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
            +     +         R  LDR   +  +  ++++    +  L +   +LL E      
Sbjct: 121 EIHGQHQQQKLLHKEYHRYILDRYAGILDVLEKYQKVYRRYTELRKKEEKLLEEQSNRIK 180

Query: 182 WCSSIEAQMAEL 193
               +  Q+ EL
Sbjct: 181 ELDILRYQLQEL 192


>gi|161528721|ref|YP_001582547.1| SMC domain-containing protein [Nitrosopumilus maritimus SCM1]
 gi|160340022|gb|ABX13109.1| SMC domain protein [Nitrosopumilus maritimus SCM1]
          Length = 806

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 9/132 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + ++  R+Y +  + F    T+F GD G GK+ IL AI F   G G        +
Sbjct: 1   MILKSIQLNNIRSYTNEIIEFPLGITLFEGDIGSGKSTILMAIEFSLFGIG--NNKGNSL 58

Query: 65  TRIGSPSFFS-TFARVEGMEGLADISIKLETRDD----RSVRCLQINDVVIRVVDELNKH 119
            +      F+     VEG     +I  KL+ ++      S   ++          EL K 
Sbjct: 59  LKTNEDEGFTKLEFSVEG--KKYEICRKLKRKNKSISQNSGYIIENEKKTTLSATELKKR 116

Query: 120 LRISWLVPSMDR 131
           +           
Sbjct: 117 IIQILKFNESSE 128


>gi|327393039|dbj|BAK10461.1| ATPase [Pantoea ananatis AJ13355]
          Length = 368

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK +++  FR+   L L    Q  +  G NG GK+N+ +A+  L
Sbjct: 1  MTIKQIHLRGFRSVRDLTLPLQ-QLNVVSGPNGCGKSNLYKAVRLL 45


>gi|301609958|ref|XP_002934531.1| PREDICTED: structural maintenance of chromosomes protein 6-like
           [Xenopus (Silurana) tropicalis]
          Length = 1116

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 28/193 (14%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F       VG+NG GK+ +L A+     G+     R ++  
Sbjct: 88  IESIFLRNFMCHSMLGPFRFGPNVNFVVGNNGSGKSAVLTALIVGLGGKAAVTNRGSTIK 147

Query: 63  DVTRIGSP-SFFSTFARVEGME--------GLADISIKLETRDDRSVRCLQINDVVIR-V 112
              + G   +  S   R  G +            +  ++     R+ +       VI   
Sbjct: 148 GFIKDGEKFAEISIKLRNRGQDAYKPDVFGNSITVRQRITKEGGRTYKLKSAAGAVISNK 207

Query: 113 VDELNKHL---------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM-IDF 162
            +EL   L          +S L   M ++F     E     D+  F +   H  +M  D+
Sbjct: 208 KEELTMILDHFNIQVDNPVSVLTQEMSKLFLQSKNE----SDKYKFFMKATHLEQMKKDY 263

Query: 163 ERLMRGRNRLLTE 175
             + + R R L +
Sbjct: 264 SYIRKQRLRDLRQ 276


>gi|269215206|ref|ZP_06159110.1| putative RecF/RecN/SMC N domain protein [Neisseria lactamica ATCC
           23970]
 gi|269208054|gb|EEZ74509.1| putative RecF/RecN/SMC N domain protein [Neisseria lactamica ATCC
           23970]
          Length = 852

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 32  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 91

Query: 61  YADVTRIGSP 70
             DV   G+ 
Sbjct: 92  MQDVIFNGAA 101


>gi|227820724|ref|YP_002824694.1| hypothetical protein NGR_c01380 [Sinorhizobium fredii NGR234]
 gi|227339723|gb|ACP23941.1| hypothetical protein NGR_c01380 [Sinorhizobium fredii NGR234]
          Length = 1018

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 96/291 (32%), Gaps = 55/291 (18%)

Query: 7   IKFLNISEFRNYAS---LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--------- 54
           ++ + +S FR Y       L  +   T+  G NG+GKT+  + + +   G+         
Sbjct: 6   LRSVELSNFRVYGDSYVFELPAEPGVTLITGANGLGKTSFFDGVEWALTGQVGRFSDIRT 65

Query: 55  GFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             RR     +TR+G+P      A         D        +      L+        + 
Sbjct: 66  DSRRREADPLTRLGAPENSHRVALAFTDGEPIDRGCGFLPTEHEVAALLKQERWPA--IS 123

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFL----------------DRMVFAIDPRHRR- 157
            L+ +L I+  +        G +  RR  L                DR+    +    + 
Sbjct: 124 NLHGYLSITHFL--------GQASTRRFSLREPKAQWEALKGPAGVDRINSLRERVSGQG 175

Query: 158 RMIDFERLMRGRNRLLTEGYFD-SSWCSSIEA--QMAELGV--------KINIARVEMIN 206
               F R +R R   L +      SW S IE   ++A L          ++      ++ 
Sbjct: 176 ARQAFTRAIRDRTLRLEKASEALQSWLSLIEERDRLARLSSSERSFPPQQVLEECERILA 235

Query: 207 ALSSLI----MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
            L+ L+     E   +   P   L   G L G+ D+ +   +E   K L  
Sbjct: 236 QLAPLLPAAQHEIAGRTEEPEAVLQRLGSLIGEVDE-YNRAEEAKLKALEA 285


>gi|163800599|ref|ZP_02194500.1| hypothetical membrane spanning protein [Vibrio sp. AND4]
 gi|159176042|gb|EDP60836.1| hypothetical membrane spanning protein [Vibrio sp. AND4]
          Length = 714

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +K+  + IS FR   S  L  + + ++ +G N  GKT+IL  +  L+
Sbjct: 1  MKVARIEISNFRLLKSFALDLEDELSLVIGKNNTGKTSILACLDKLA 47


>gi|114777947|ref|ZP_01452861.1| DNA repair protein RecN [Mariprofundus ferrooxydans PV-1]
 gi|114551734|gb|EAU54286.1| DNA repair protein RecN [Mariprofundus ferrooxydans PV-1]
          Length = 558

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 20/152 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I +F     ++L  DA  T+F G+ G GK+ +++A+     G  F   + AD  R
Sbjct: 2   LVSLIIKQFALIEHVQLQLDAGMTVFTGETGAGKSMLVDAL-----GAVFGTRASADWVR 56

Query: 67  IGSPSFFSTFA------RVEGMEGLADISIKLETRDDR-----SVRCLQINDVVI--RVV 113
            G+              ++  +    DI ++ E    R           IN V +  RV+
Sbjct: 57  HGAERAEVMAVWQGGEKQIAALLAEQDIDVEDELILRRIINSDGRSRAYINGVPVPSRVL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +L +             +       +RR LD
Sbjct: 117 QQLGRVCLDLHGQHEHQALLQ--PDFQRRLLD 146


>gi|24668225|ref|NP_649334.2| Smc5, isoform A [Drosophila melanogaster]
 gi|23094255|gb|AAF51749.2| Smc5, isoform A [Drosophila melanogaster]
          Length = 735

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I  +   +F +Y+ +         +  G NG GK+ I+ AI  L  G       R AS 
Sbjct: 15  RIHSVYCKDFVSYSEITFHPKHYLNVLTGPNGSGKSTIVSAI-ILGLGGEPILLDRSASV 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD  +    S  +   RV G              +   +    +ND      + L 
Sbjct: 74  ADYIQSNKTSA-TIIVRVYGR-TPNTTETFRRIINSNGLSTFSVNDKDTSKKNFLA 127


>gi|304436636|ref|ZP_07396605.1| DNA repair protein RecN [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304370332|gb|EFM23988.1| DNA repair protein RecN [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 574

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 64/209 (30%), Gaps = 24/209 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +  L I  F     + + F     I  G+ G GK +IL  I  L    G R    ADV
Sbjct: 1   MVLHSLRIQNFALLEEVTVEFGTGLNILTGETGAGK-SIL--IGALGTILGQRV--LADV 55

Query: 65  TRIGS-----------PSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            R G                   A +   E   D  + +  +  R+ +  + +N   + +
Sbjct: 56  IRSGCDFLRVEAVFSIEENSVVSALLAEQEIEYDDELIIVRKVSRAGKSSILVNGAHVTL 115

Query: 113 --VDELNKHLRISWLVPSMDRIFSGLSMERRRFL---DRMVFAIDPRHRRRMIDFERLMR 167
             + +L  HL           +    +   R  L   D  +      ++     ++   +
Sbjct: 116 TFLKKLAPHLVDIHGQNENLALLREEAQ--RSLLEGDDADLAERLCAYQDVYRAWKARTK 173

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
            R     E    +     +  Q  E+   
Sbjct: 174 EREMRTEENAEIAERLDMLRWQEQEIAEA 202


>gi|253752338|ref|YP_003025479.1| DNA repair protein [Streptococcus suis SC84]
 gi|253754164|ref|YP_003027305.1| DNA repair protein [Streptococcus suis P1/7]
 gi|253756098|ref|YP_003029238.1| DNA repair protein [Streptococcus suis BM407]
 gi|302024289|ref|ZP_07249500.1| DNA repair protein [Streptococcus suis 05HAS68]
 gi|330833275|ref|YP_004402100.1| putative DNA repair protein [Streptococcus suis ST3]
 gi|251816627|emb|CAZ52267.1| putative DNA repair protein [Streptococcus suis SC84]
 gi|251818562|emb|CAZ56395.1| putative DNA repair protein [Streptococcus suis BM407]
 gi|251820410|emb|CAR47043.1| putative DNA repair protein [Streptococcus suis P1/7]
 gi|319758739|gb|ADV70681.1| putative DNA repair protein [Streptococcus suis JS14]
 gi|329307498|gb|AEB81914.1| putative DNA repair protein [Streptococcus suis ST3]
          Length = 553

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 103/279 (36%), Gaps = 43/279 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   TI  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+                       +G+E   ++ I+ E  ++ RSV  +    V + V
Sbjct: 57  HGAAKAEIEGLFSFENSRALEQILLEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFE----RLM 166
           + ++ ++L         + +       R    F +   +++  R++     +     R++
Sbjct: 117 LKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDRYQTTFDAYRSLRKRVL 176

Query: 167 -RGRNRLLTEGYFDSSWCSSIEAQMAEL----GVKINIARVEMINALS-----SLIMEYV 216
            + +N    +   +       E + A+L     +++N  R +++N        +     +
Sbjct: 177 EKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALL 236

Query: 217 QKENFPHI--------KLSLTGFLDGKFDQSFCALKEEY 247
             E+F  +         L      D  + Q   +L E Y
Sbjct: 237 DNEDFSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAY 275


>gi|226306752|ref|YP_002766712.1| DNA repair protein RecN [Rhodococcus erythropolis PR4]
 gi|226185869|dbj|BAH33973.1| DNA repair protein RecN [Rhodococcus erythropolis PR4]
          Length = 592

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 40/213 (18%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I+I  L +      +     F    T+  G+ G GKT ++ ++  LS  R     +
Sbjct: 1   MLAEIRIDSLGV-----ISEASAQFHEGLTVLTGETGAGKTMVVTSLHLLSGAR-----A 50

Query: 61  YADVTRIGSPSFFSTFARV---------------------EGMEGLADISIKLETRDDRS 99
            A   R+G+         +                     E  E    I+++    D RS
Sbjct: 51  DAGRVRLGASRAVVEGRFIADDVSPATEREIVRILESSGAERDEDGTIIAVRTVGSDGRS 110

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR----RFLDRMVFAIDPRH 155
              L    V   V+ E    L          R+      ++R    RF D+ +  +  R+
Sbjct: 111 RAHLGGRSVPAGVLSEFTDPLLTVHGQNDQLRLLR--PDQQRNALDRFGDKAIGTLLTRY 168

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
           R+   ++   +  R+ L+             + 
Sbjct: 169 RKHRREW---LDARSELIERTSKARELAQEADQ 198


>gi|296084229|emb|CBI24617.3| unnamed protein product [Vitis vinifera]
          Length = 125

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          + IK + +  F++YA+  +V  FD       G NG  K+NIL++I F+      R+   +
Sbjct: 1  MYIKDICLEGFKSYATRTVVPGFDPYFNAITGLNGSCKSNILDSICFVLGITNLRQVLAS 60

Query: 63 DV 64
          ++
Sbjct: 61 NL 62


>gi|254850929|ref|ZP_05240279.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|254846634|gb|EET25048.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|259156350|gb|ACV96296.1| conserved hypothetical protein [Vibrio cholerae Ind4]
          Length = 389

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          IK +++S F++     L  D++    +G NG GK+++L+  S++S  
Sbjct: 2  IKRISVSAFKSLVDFELNLDSKFNCIIGLNGAGKSSVLQLFSYVSAL 48


>gi|45201184|ref|NP_986754.1| AGR089Cp [Ashbya gossypii ATCC 10895]
 gi|44985967|gb|AAS54578.1| AGR089Cp [Ashbya gossypii ATCC 10895]
          Length = 1370

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
           R+ I+ L +  F++YA  ++   F +  +  VG NG GK+N+++++ F    R    R+ 
Sbjct: 105 RLCIRTLVLENFKSYAGRQVVGPFHSSFSAVVGPNGSGKSNVIDSMLFAFGFRANKMRQG 164

Query: 60  SYADVTRIGSPSFFSTFARVE 80
             + +           F  VE
Sbjct: 165 KLSHLIHKSEKYPDLDFCSVE 185


>gi|304393526|ref|ZP_07375454.1| chromosome segregation protein SMC [Ahrensia sp. R2A130]
 gi|303294533|gb|EFL88905.1| chromosome segregation protein SMC [Ahrensia sp. R2A130]
          Length = 1153

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++         A  T  VG NG GK+N++EA+ ++     +   R ++
Sbjct: 1   MEFDKLRLLGFKSFVEPTEFSIKAGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASA 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       +   +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSGNRPSRNMAEVALFLNNDDRTAPAAFNDAEELQVSRRIEREAGSVYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
            +R  D   L   +      PSM        + S     RR  L+
Sbjct: 121 DVRAKDVQLLFADVSTGARSPSMIGQGRIGELISAKPQARRALLE 165


>gi|229494835|ref|ZP_04388589.1| DNA repair protein RecN [Rhodococcus erythropolis SK121]
 gi|229318273|gb|EEN84140.1| DNA repair protein RecN [Rhodococcus erythropolis SK121]
          Length = 592

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 68/213 (31%), Gaps = 40/213 (18%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I+I  L +      +     F    T+  G+ G GKT ++ ++  LS  R     +
Sbjct: 1   MLAEIRIDSLGV-----ISEASAQFHEGLTVLTGETGAGKTMVVTSLHLLSGAR-----A 50

Query: 61  YADVTRIGSPSFFSTFARV---------------------EGMEGLADISIKLETRDDRS 99
            A   R+G+         +                     E  E    I+++    D RS
Sbjct: 51  DAGRVRLGASRAVVEGRFIADDVSPATEREIVRILESSGAERDEDGTIIAVRTVGSDGRS 110

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR----RFLDRMVFAIDPRH 155
              L    V   V+ E    L          R+      ++R    RF D+ +  +  R+
Sbjct: 111 RAHLGGRSVPAGVLSEFTDPLLTVHGQNDQLRLLR--PDQQRNALDRFGDKAIGTLLTRY 168

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
           R+   ++   +  R+ L+             + 
Sbjct: 169 RKHRREW---LDARSELIERTSKARELAQEADQ 198


>gi|166033147|ref|ZP_02235976.1| hypothetical protein DORFOR_02869 [Dorea formicigenerans ATCC
          27755]
 gi|166027504|gb|EDR46261.1| hypothetical protein DORFOR_02869 [Dorea formicigenerans ATCC
          27755]
          Length = 524

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          +KIK L +  F  + +  + F     +  G+N  GK+ +
Sbjct: 1  MKIKELRLKNFGKFTNKEIHFSDGMNVIYGENESGKSTL 39



 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 67/186 (36%), Gaps = 14/186 (7%)

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             ++ ++    +++   RV   N L   + E     +   I  +         D+    L
Sbjct: 332 DRLKWELERNALELGDKRVRYSN-LKEDLEELDGISDEERILNAQAEARQLAIDK-IQEL 389

Query: 244 KEEYAKKLF---DGRKMDSMS-----RRTLIGPHRS-DLIVDYCDKAITIAHGSTGEQKV 294
             E  KKL    + R  + M      + T +      ++ +    + + IA  S G  + 
Sbjct: 390 SGEMQKKLRGKLNDRVSEIMEFITEGKYTRLNVEEGLNISLLSEGRKVDIARVSQGTAEQ 449

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           V   + +A + ++         ++LD+     DE++  ++   +   G Q+ +    K  
Sbjct: 450 VYFALRMAASEVLLE---EELPVILDDTFVSYDEERLESVLEWLAKSGKQVLLFTCQKRE 506

Query: 355 FDSLNE 360
              L+E
Sbjct: 507 MKILSE 512


>gi|170090358|ref|XP_001876401.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164647894|gb|EDR12137.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1203

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 10/107 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF------RRAS 60
           I  + +  F  Y  +         + VG NG GK++I  +I   + G  F      R + 
Sbjct: 121 IVRIQLHNFVTYDFVEFRPGPYLNMIVGPNGTGKSSIACSI---ALGLNFPPSILGRASE 177

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                +IG+   +     ++G +G  ++ I+             +N 
Sbjct: 178 LNSFVKIGTEGGY-IEIELKGPKGKRNVIIRRTLSATSKSSNFTLNG 223


>gi|187917926|ref|YP_001883489.1| chromosome partition protein Smc [Borrelia hermsii DAH]
 gi|119860774|gb|AAX16569.1| chromosome partition protein Smc [Borrelia hermsii DAH]
          Length = 821

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 5/112 (4%)

Query: 1   MTNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGF 56
           M   + ++ + +  F+++     L  ++     VG NG GK+N+L+AI F          
Sbjct: 1   MGVALFLEKIGLLGFKSFVKMQELKLNSSLNFIVGPNGCGKSNLLDAIRFCIGEDNLSIL 60

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
           R     D+    + S  S FA V       D+S+          R L  +  
Sbjct: 61  RVKYITDLISA-AKSGESNFAEVTLFFNNEDLSVSDFRDRFYIRRRLYKDGT 111


>gi|281366582|ref|NP_996141.2| Smc5, isoform E [Drosophila melanogaster]
 gi|272455266|gb|AAN12179.3| Smc5, isoform E [Drosophila melanogaster]
          Length = 1034

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I  +   +F +Y+ +         +  G NG GK+ I+ AI  L  G       R AS 
Sbjct: 15  RIHSVYCKDFVSYSEITFHPKHYLNVLTGPNGSGKSTIVSAI-ILGLGGEPILLDRSASV 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD  +    S  +   RV G              +   +    +ND      + L 
Sbjct: 74  ADYIQSNKTSA-TIIVRVYGR-TPNTTETFRRIINSNGLSTFSVNDKDTSKKNFLA 127


>gi|70729404|ref|YP_259142.1| ATP/GTP-binding protein [Pseudomonas fluorescens Pf-5]
 gi|68343703|gb|AAY91309.1| ATP/GTP-binding protein [Pseudomonas fluorescens Pf-5]
          Length = 466

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          I+ L+I    NY  + L F+    +  G NG GKT +L
Sbjct: 5  IQSLSIRMLHNYLDIDLSFNEGLNVIYGKNGKGKTTVL 42


>gi|110634348|ref|YP_674556.1| DNA repair protein RecN [Mesorhizobium sp. BNC1]
 gi|110285332|gb|ABG63391.1| DNA replication and repair protein RecN [Chelativorans sp. BNC1]
          Length = 558

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L + F A  ++  G+ G GK+ +L+++S     RG      A + R
Sbjct: 2  LSHLSIRDIVLIERLDIDFSAGLSVLTGETGAGKSILLDSLSLALGARG-----DASLVR 56

Query: 67 IGSPSFFSTFA 77
           G+     T  
Sbjct: 57 HGAEQGQVTAV 67


>gi|302874816|ref|YP_003843449.1| DNA repair protein RecN [Clostridium cellulovorans 743B]
 gi|307690566|ref|ZP_07633012.1| DNA repair protein recN [Clostridium cellulovorans 743B]
 gi|302577673|gb|ADL51685.1| DNA repair protein RecN [Clostridium cellulovorans 743B]
          Length = 567

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI+ F    +L + F    T+  G+ G GK+ +++AISF+   +  R      V R
Sbjct: 2  LLQLNINNFALIENLTINFSEGFTVLTGETGTGKSILIDAISFVLGAKNNRG-----VIR 56

Query: 67 IGSPSFFS 74
           G+   F 
Sbjct: 57 TGTDKAFV 64


>gi|296328718|ref|ZP_06871233.1| DNA repair protein RecN [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
 gi|296154155|gb|EFG94958.1| DNA repair protein RecN [Fusobacterium nucleatum subsp. nucleatum
           ATCC 23726]
          Length = 558

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 84/258 (32%), Gaps = 22/258 (8%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ ++ L I        L + FD    +  G+ G GK+ IL  I+ L   +     +
Sbjct: 1   MGRKLMLRELKIENLAIIDELDIEFDKGFIVLTGETGAGKSIILSGINLLIGEK-----A 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+ R G  +  +        E    +        D     + I     R        +
Sbjct: 56  SVDMIRDGEENLVAQGVFDVDEEQKKALE---AMGIDTDGDEIIIRRSYSRSGKARA-FI 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
               +  +  +  +         L  +V     +      +  +L+   + L  +     
Sbjct: 112 NNVRISLADLKEIAST-------LVDIVGQHSHQMLLNKNNHIKLLD--SFLNKDEKDLK 162

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS--LTGFLDGKFDQ 238
              +S+ +Q  E+  KI     E    L        Q E    +KL       L+ ++ +
Sbjct: 163 ENLASLLSQYREIDSKIENIEREKKETLEKKEFYEYQLEEIEKLKLKDGEDELLEVEYKR 222

Query: 239 SFCALKEEYAKKLFDGRK 256
            F A  E+  +K+++  +
Sbjct: 223 VFNA--EKIREKVYESLE 238


>gi|255319725|ref|ZP_05360933.1| DNA repair protein RecN [Acinetobacter radioresistens SK82]
 gi|255303254|gb|EET82463.1| DNA repair protein RecN [Acinetobacter radioresistens SK82]
          Length = 553

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 96/278 (34%), Gaps = 41/278 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L L  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLALDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGS----------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV- 109
            G+                 + + +   +    G   +   +            IN    
Sbjct: 57  YGTDKADITAVFSYQPDSPEAGWLSAHELNDESGEIHLRRVIFATGRSK---AWINGRPS 113

Query: 110 -IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLM 166
            +  + E+ + L   +   S  ++        R++LDR    +    + R     +++ +
Sbjct: 114 SLSELKEIGRLLVQLYSQHSQQQLLE--PPYPRKWLDRYSNFYNEAQQVRDAYSQWQKNI 171

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           R     L          S++E Q+ EL   + I   E+         E+ +  +  HI  
Sbjct: 172 RQHQAALEAQASRLQRISTLELQLEELEDIVAIHYKEI-------EQEFDRLSHHEHIMQ 224

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
                L+   D++   L +E +  +   R++++ + R+
Sbjct: 225 DCAYSLNV-LDEAESNLSQELSSVI---RRLETHAGRS 258


>gi|219850705|ref|YP_002465137.1| SMC domain protein [Methanosphaerula palustris E1-9c]
 gi|219544964|gb|ACL15414.1| SMC domain protein [Methanosphaerula palustris E1-9c]
          Length = 862

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          + +  L I   R+Y    + + F    ++F GD G GK+ IL AI F   G G       
Sbjct: 2  LHLVHLRIQNIRSYGEEPITIDFSPGISLFSGDIGSGKSTILSAIEFGLFGLG--DVKST 59

Query: 63 DVTRIGSPSFFSTFARVEGME 83
           + R        +   + G E
Sbjct: 60 HLLRHHQKRGEVSLTFITGEE 80


>gi|170703331|ref|ZP_02894120.1| ATPase-like protein [Burkholderia ambifaria IOP40-10]
 gi|170131763|gb|EDT00302.1| ATPase-like protein [Burkholderia ambifaria IOP40-10]
          Length = 391

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +  L I+ +R+   L +       +  G NG GK+++  A+  L+
Sbjct: 3  ALNTLAIANYRSLRELIVPLAP-LNVVTGPNGSGKSSVYRALRLLA 47


>gi|153820237|ref|ZP_01972904.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
 gi|126509220|gb|EAZ71814.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
          Length = 204

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ + I+ FR    L L FD   T  +G+N  GK+++L+A+S + P  G
Sbjct: 1  MHLERIEIAGFRGIRRLSLTFDE-ITTLIGENTWGKSSLLDALSVVLPADG 50


>gi|145521847|ref|XP_001446773.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124414262|emb|CAK79376.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1295

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 2  TNRIKIKFLNISEFRNY-ASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
           +++ I  + +  F++Y   L +  F  Q T  VG NG GK+N++E++ F+   +    R
Sbjct: 8  PSQLIINRIILDNFKSYYGHLEIGPFHHQFTSIVGPNGSGKSNLIESLLFVFGKKASWMR 67

Query: 58 RASYADVTRIGSPSFFSTFARVE 80
                +    +       A VE
Sbjct: 68 LQKIHQLIHNSAEHRDVKKASVE 90


>gi|77360038|ref|YP_339613.1| hypothetical protein PSHAa1095 [Pseudoalteromonas haloplanktis
          TAC125]
 gi|76874949|emb|CAI86170.1| putative orphan protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 693

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTN 42
          +K+    I  FR    + + F+   T+FVG N  GKT+
Sbjct: 1  MKLAKAFIRNFRRLEEVEVDFEKSETVFVGPNNSGKTS 38


>gi|17550582|ref|NP_510041.1| hypothetical protein C23H4.6 [Caenorhabditis elegans]
 gi|3874427|emb|CAB01681.1| C. elegans protein C23H4.6a, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1137

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 9/116 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFD-AQHTIFV--GDNGVGKTNILEAISFLSPGR---GFRRA 59
           ++  +++  F  +A+L + FD A    F   G NG GK+ +  A++    GR     R  
Sbjct: 41  RVASIHLKNFMCHANLLIEFDVANKNCFYIGGPNGSGKSALFAAMNMGLGGRGSDSERGN 100

Query: 60  SYADVTRIGSPSF-FSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRV 112
           +     + G+     +     EG+  L +    I +E   +R+     I ++ +  
Sbjct: 101 NVQAYIKDGTTQAKITITLTNEGLNALPEYDELISIERTINRTASKYTIRNIKVNT 156


>gi|300919013|ref|ZP_07135562.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300413862|gb|EFJ97172.1| conserved hypothetical protein [Escherichia coli MS 115-1]
          Length = 520

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          I  L +  F+ +  L L F     I VGDN  GK+ IL A+  +      R 
Sbjct: 4  ITRLMLQNFKKFPELDLRFTHDRNILVGDNESGKSTILLALDLVLSDSRHRV 55


>gi|300837015|ref|YP_003754069.1| hypothetical protein pKP048_p076 [Klebsiella pneumoniae]
 gi|299474819|gb|ADJ18643.1| hypothetical protein [Klebsiella pneumoniae]
          Length = 520

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          I  L +  F+ +  L L F     I VGDN  GK+ IL A+  +      R 
Sbjct: 4  ITRLMLQNFKKFPELDLRFTHDRNILVGDNESGKSTILLALDLVLSDSRHRV 55


>gi|225571188|ref|ZP_03780186.1| hypothetical protein CLOHYLEM_07276 [Clostridium hylemonae DSM
           15053]
 gi|225160019|gb|EEG72638.1| hypothetical protein CLOHYLEM_07276 [Clostridium hylemonae DSM
           15053]
          Length = 515

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 30/198 (15%)

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-L 228
           N +  E         ++  Q+ EL           ++++S      +Q       +LS L
Sbjct: 334 NHVCEELREKQVQYDNLREQLEELDE---------VSSMSREQERNIQGVRLAMERLSEL 384

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY--CDKAITIAH 286
              +  + +Q       E   ++  GR        T +     DL ++     + I +  
Sbjct: 385 AAGMQKELEQKLDDRASEIMSEITGGR-------YTKLVVE-DDLHMNLICGGRKIPVEQ 436

Query: 287 GSTG--EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
            S G  EQ      + +A A L+       P++L D+   + D+ +     R + +   Q
Sbjct: 437 VSRGTIEQ--TYFALRMASAGLLHEE--EYPVIL-DDTFVYYDDVRLENTLRWLAENKKQ 491

Query: 345 IFMTGT---DKSVFDSLN 359
           + +      ++ + D L 
Sbjct: 492 VIIFTCQKREEHILDELG 509



 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          ++IK L +  F       +       +  G+N  GK+ +
Sbjct: 1  MRIKELMVKNFGKIKDKNVTLSDGVNLLYGENESGKSTL 39


>gi|221130377|ref|XP_002165777.1| PREDICTED: similar to SMC4 protein, partial [Hydra magnipapillata]
          Length = 190

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRASYA 62
           I  +    F++YA  ++   F    T  VG NG GK+N+++A+ F+   R    R    +
Sbjct: 45  ITHIENINFKSYAGKQVLGPFHKNFTSIVGRNGSGKSNVIDAMLFVFGYRSQKIRSKKLS 104

Query: 63  DVTRIGSPSFFST 75
            +    S S  + 
Sbjct: 105 LLI-HNSESHLNI 116


>gi|195480658|ref|XP_002086685.1| GE23268 [Drosophila yakuba]
 gi|194186475|gb|EDX00087.1| GE23268 [Drosophila yakuba]
          Length = 1034

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 7/116 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I  +   +F +Y+ +         +  G NG GK+ I+ AI  L  G       R AS 
Sbjct: 15  RIHSVYCKDFVSYSEITFHPKHYLNVLTGPNGSGKSTIVSAI-ILGLGGEPILLDRSASV 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD  +    S  +   RV G              +        +ND      + L 
Sbjct: 74  ADYIQSNKTSA-TIIVRVYGR-TPNTTETFRRVINSNGSSIFSVNDKDTSKKNFLA 127


>gi|48427624|emb|CAD43404.2| SMC1beta protein [Homo sapiens]
          Length = 1235

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
           ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3  HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKNIQ 62

Query: 63 DVTR 66
          ++  
Sbjct: 63 ELIH 66


>gi|330872365|gb|EGH06514.1| ATP-binding protein [Pseudomonas syringae pv. glycinea str. race
          4]
          Length = 288

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 7  IKFLNISE---FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K L++     FR    L L       + VG+NG+GKT++L+    L
Sbjct: 2  LKTLSVKNLTVFR---ELNLTCSPGLNVIVGENGMGKTHLLKVAYAL 45


>gi|325977775|ref|YP_004287491.1| DNA repair protein recN [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177703|emb|CBZ47747.1| DNA repair protein recN [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 552

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 31/215 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLTFENGMTVLTGETGAGKSIIIDAMNLMLGAR-----ASLDVIR 56

Query: 67  IGSPSFFSTFARVEGM--------------EGLADISIKLETRDD---RSVRCLQINDVV 109
            G+       A +EG+              E   D++ +L  R D         +IN  +
Sbjct: 57  HGANK-----AEIEGLFSVGENPALTQILEENGIDVTEELIIRRDILQNGRSIGRINGQM 111

Query: 110 IR--VVDELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERL 165
           +    +  + ++L         + +       R    F +     +   ++     + +L
Sbjct: 112 VNLTTLRAVGQYLVDIHGQHDQEELMKPNMHIRMLDEFGNEQFADVKKHYQELFESYRQL 171

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
            +             +    +E Q+AE+      A
Sbjct: 172 RKRVVTKQKNEQEHKARIEMLEFQIAEIEAAALKA 206


>gi|319408815|emb|CBI82472.1| DNA repair protein RecN [Bartonella schoenbuchensis R1]
          Length = 554

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 90/264 (34%), Gaps = 32/264 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I        L + F     I  G+ G GK+ +L+++S    GRG      A + R
Sbjct: 2   LIQLSIHNIVLIEKLDISFPMGLLILTGETGAGKSILLDSLSLALGGRG-----DASLVR 56

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+     T               R  G +   DI ++    +D   R    + V    +
Sbjct: 57  HGAEQGQVTAVFDVPISHPVRQLIRENGFDNEGDIILRRVQSNDGRSRGFINDQVASIAL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRF-----LDRMVFAIDPRHRRRMIDFERLMRG 168
                 + +       DR    +   RR       L+     +   + R   + E  ++ 
Sbjct: 117 MRNVGRMLVEIHGQHDDRALVDVDTHRRLLDAFGGLESEAENVRKCY-RIWHELEEHVQQ 175

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKI------NIARVEMIN--ALSSLIMEYVQKEN 220
           ++  +     ++ +  +   ++ +    I      ++ R +M+    +++ I E     N
Sbjct: 176 QHIKVEAATREAFYLRASVEELEKFDFTIDEENTLSLRRADMLKLDKIATDIKEADDLFN 235

Query: 221 FPHIKLSLTGFLDGKFDQSFCALK 244
            P   +S+   L  + ++     +
Sbjct: 236 GPKSPISILSNLVRRLERKIPEAQ 259


>gi|306830875|ref|ZP_07464037.1| DNA repair protein RecN [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426898|gb|EFM30008.1| DNA repair protein RecN [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 552

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 31/215 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLTFENGMTVLTGETGAGKSIIIDAMNLMLGAR-----ASLDVIR 56

Query: 67  IGSPSFFSTFARVEGM--------------EGLADISIKLETRDD---RSVRCLQINDVV 109
            G+       A +EG+              E   D++ +L  R D         +IN  +
Sbjct: 57  HGANK-----AEIEGLFSVGENPALTQILEENGIDVTEELIIRRDILQNGRSIGRINGQM 111

Query: 110 IR--VVDELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERL 165
           +    +  + ++L         + +       R    F +     +   ++     + +L
Sbjct: 112 VNLTTLRAVGQYLVDIHGQHDQEELMKPNMHIRMLDEFGNEQFADVKKHYQELFESYRQL 171

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
            +             +    +E Q+AE+      A
Sbjct: 172 RKRVVTKQKNEQEHKARIEMLEFQIAEIEAAALKA 206


>gi|168205257|ref|ZP_02631262.1| putative DNA double-strand break repair Rad50 ATPase [Clostridium
          perfringens E str. JGS1987]
 gi|170663130|gb|EDT15813.1| putative DNA double-strand break repair Rad50 ATPase [Clostridium
          perfringens E str. JGS1987]
          Length = 658

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++IK + +  F  Y +     +   T+  G NG GK+ +LE I+F   G
Sbjct: 1  MQIKKILLKNFGKYTNKDFEIEP-ITLIKGPNGSGKSTVLEGITFALTG 48


>gi|165975483|ref|YP_001651076.1| DNA repair protein [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|165875584|gb|ABY68632.1| DNA repair protein [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
          Length = 582

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 85/275 (30%), Gaps = 37/275 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L ++ F     L L  +   ++  G+ G GK+  ++A+S     R       + + R
Sbjct: 27  LTHLTVNNFAIVRHLTLELNEGMSVITGETGAGKSIAIDALSLCLGYRS-----ESSMIR 81

Query: 67  IGSP----------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VV 109
            G+                   +     +   +   +  ++     +   +    N  + 
Sbjct: 82  HGADKADITATFSMQATSPAYLWLKQHELLDEDNPQECILRRMINQEGRSKAFVNNRPLP 141

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMR 167
           I  + EL ++L       +   +    S  +   LD    +  +      +   +++L +
Sbjct: 142 ISQLRELGQYLIHLNGQHAPQLLLK--SEYQLEVLDNYAGIHNLLNEMSSQYQRWKKLHQ 199

Query: 168 G-RN--RLLTEGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSSLIMEYV 216
             +N  +   E             ++ E  +K           +R+    AL++L  E  
Sbjct: 200 QVKNFRQQCQENEAREQLLQYQVDELDEFAIKQGEFEEMEETHSRLSNSEALTALSQEVT 259

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
              +   + +    +   +  +    +   Y   L
Sbjct: 260 DLLSESELNVDSMLYKAIRHLEDLVEVDSRYQSAL 294


>gi|89895401|ref|YP_518888.1| hypothetical protein DSY2655 [Desulfitobacterium hafniense Y51]
 gi|89334849|dbj|BAE84444.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1198

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 7  IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
          +K + I  F+++A  ++L      ++ VG NG GK+N+ +AI ++      +  R +   
Sbjct: 11 LKSITIQGFKSFADKVKLELGQGLSVVVGPNGSGKSNVADAIRWVLGEQSAKNLRGSKME 70

Query: 63 DVTRIGS 69
          DV   GS
Sbjct: 71 DVIFSGS 77



 Score = 36.0 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 14/157 (8%)

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLFDG 254
               R + ++     + E    E+   +   L   +  +F++ F A+ E +    K+LF+G
Sbjct: 1007 LQERYDFLSVQKQDLEE--ANESLQQLIAELDKTMSERFEEGFIAVNEAFKVVFKELFNG 1064

Query: 255  RKMDSMS--RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
               +        L+      +      K   ++  S GE+ +  +G+  A  ++      
Sbjct: 1065 GYAELRLVDPTNLLDTGVEIIAQPPGKKPQLLSLLSGGERALTAIGLLFALLKV-----K 1119

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
             +P  +LDEI A LD+   +   + +  +   +Q  +
Sbjct: 1120 PSPFCVLDEIEASLDDANVSRFAQYIHRLSDSTQFLV 1156


>gi|270263651|ref|ZP_06191920.1| hypothetical protein SOD_e02760 [Serratia odorifera 4Rx13]
 gi|270042535|gb|EFA15630.1| hypothetical protein SOD_e02760 [Serratia odorifera 4Rx13]
          Length = 666

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 97/300 (32%), Gaps = 40/300 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPG 53
           + IK L +  FR +  +  +    +            +F G NG GKT+IL AI     G
Sbjct: 1   MLIKQLVLHNFRVFNGTHTIDLAPRKRRHDDNPRPIILFGGLNGAGKTSILSAIRLALYG 60

Query: 54  RGFRRASYAD---------VTRIGS-------PSFFSTFARVEGMEGLADISIKLETRDD 97
           R     +            +   G+        +              ++ +++    + 
Sbjct: 61  RLAFGPATQQQEYIEHLSSLIHNGAHNIERPTEAAIELTFTYNKDGYESEFTVQRTWENG 120

Query: 98  RSVRCLQINDVVIRVVDELNKHLRISWLVPSMD-----RIFSGLSMERRRFLDRMVFAID 152
              R         +V++ELN   +    +  +       +F     +     +     I 
Sbjct: 121 HKDRLYL--QQDGKVLNELNDD-QCQGFLNELIPHGIADLFFFDGEKIAELAEDESGTIL 177

Query: 153 PRHRRRMIDFERLMRGRNRLL--TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
               RR++  + + + RN L+   +    S    S + Q+A+L V+I     +    L  
Sbjct: 178 RTAVRRLLGLDLISKLRNDLMIFVKRQQSSQLADSQQQQLADLEVQIKQLDYQTEEILEK 237

Query: 211 LIMEYVQKENFPHIKLSLTGFL---DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
                 + +      +   G L    G F  +    K++    L D  +++   R+   G
Sbjct: 238 ADFTKTRIDFLSKDIIRYEGLLNAQGGAFAHTKTQEKQKVETLLKDKERLEKALRQECDG 297


>gi|260598994|ref|YP_003211565.1| recombination and repair protein [Cronobacter turicensis z3032]
 gi|260218171|emb|CBA33014.1| DNA repair protein recN [Cronobacter turicensis z3032]
          Length = 573

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 94/268 (35%), Gaps = 38/268 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 22  LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 76

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 77  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 135

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     D    M    R
Sbjct: 136 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GDLMAQMAQSYR 184

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 185 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQAGEF-EQIDEEYKRLANSGQ 242

Query: 232 LDGKFDQSFCALKE----EYAKKLFDGR 255
           L     Q+   L +        +L+  R
Sbjct: 243 LLSTSQQALNLLADAEDANLQSQLYSAR 270


>gi|224367396|ref|YP_002601559.1| RecN [Desulfobacterium autotrophicum HRM2]
 gi|223690112|gb|ACN13395.1| RecN [Desulfobacterium autotrophicum HRM2]
          Length = 568

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L I  F     +R+ F    ++  G+ G GK+ I+EA++ L  GR     + +D+ R
Sbjct: 2  LSELAIKNFAIIDDIRISFSRGFSVLTGETGAGKSIIIEAVNLLLGGR-----AASDLVR 56

Query: 67 IGSP 70
           G  
Sbjct: 57 TGEK 60


>gi|158522527|ref|YP_001530397.1| DNA repair protein RecN [Desulfococcus oleovorans Hxd3]
 gi|158511353|gb|ABW68320.1| DNA repair protein RecN [Desulfococcus oleovorans Hxd3]
          Length = 572

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 27/149 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     LR+ FD   TI  G+ G GK+ I+ A++ L   R     + A + R
Sbjct: 2   LNELAIKNFAIIDDLRIRFDRGLTILSGETGAGKSIIINAVNLLLGSR-----ATARLIR 56

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQINDVV-IRV 112
            G  +                    V G+ G  ++ I+    D    R         I+V
Sbjct: 57  TGESTAEVEAVFDVAPKSELARKLEVNGLTGDNELIIRRVVSDTNKNRIYINGHAATIQV 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIF 133
           + ++         +H     L   +  + 
Sbjct: 117 LSDITASLASISGQHAHQQLLNEDLHLLI 145


>gi|33864877|ref|NP_896436.1| SMC ATPase superfamily chromosome segregation protein
          [Synechococcus sp. WH 8102]
 gi|33632400|emb|CAE06856.1| putative chromosome segregation protein, SMC ATPase superfamily
          [Synechococcus sp. WH 8102]
          Length = 1203

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  + +++F+++  ++ +  +   T+  G NG GK+NIL+ + F   L+  RG R   
Sbjct: 2  VHINQVGLTQFKSFGGAMTIPLEQGFTVVTGPNGSGKSNILDGVLFCLGLATSRGMRADR 61

Query: 61 YADVTR 66
            D+  
Sbjct: 62 LPDLIN 67


>gi|85714985|ref|ZP_01045970.1| DNA repair protein RecN [Nitrobacter sp. Nb-311A]
 gi|85698182|gb|EAQ36054.1| DNA repair protein RecN [Nitrobacter sp. Nb-311A]
          Length = 556

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 70/230 (30%), Gaps = 35/230 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  R+ I+ + +        L + F A   +  G+ G GK+ +L+A +    GRG     
Sbjct: 1   MLARLSIRDIVL-----IERLDIEFAAGLAVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61  YADVTRIGSPSFFSTFAR-------------VEGMEGLADISIKLETRDDRSVRCLQIND 107
            A + R G+     T                  G++   ++ ++     D   R    + 
Sbjct: 51  DAGLVRHGAEQGQVTATFDVPKSHPACAILAANGVDSAGEMILRRVQLADGRTRAFINDQ 110

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRF-----LDRMVFAIDPRHRRRMIDF 162
            +            +       +R     S  RR       LD  V  ++     R   +
Sbjct: 111 AISVQTLRAVGATLVEIHGQHDERALVDASTHRRLLDAFAGLDTDVATLEALWEARRCAY 170

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMIN 206
             L   R   +     ++ +      ++ +L         +   R  M+ 
Sbjct: 171 AALDEHR-AGMERAAREAEYLRHASDELTQLAPQDSEEAALAERRATMMA 219


>gi|90424786|ref|YP_533156.1| DNA repair protein RecN [Rhodopseudomonas palustris BisB18]
 gi|90106800|gb|ABD88837.1| DNA repair protein RecN [Rhodopseudomonas palustris BisB18]
          Length = 561

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M  R+ I+ + +        L + F     +  G+ G GK+ +L+A +    GRG     
Sbjct: 1  MLARLSIRDIVL-----IERLDIEFARGLAVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61 YADVTRIGSPSFFSTFA 77
           A + R G+     T A
Sbjct: 51 DAGLVRHGAEHGQVTAA 67


>gi|295839680|ref|ZP_06826613.1| DNA repair protein RecN [Streptomyces sp. SPB74]
 gi|295827597|gb|EFG65491.1| DNA repair protein RecN [Streptomyces sp. SPB74]
          Length = 576

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 10/70 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     + A +
Sbjct: 9  MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADAAL 58

Query: 65 TRIGSPSFFS 74
           RIG+ S   
Sbjct: 59 VRIGAKSAVV 68


>gi|288904843|ref|YP_003430065.1| DNA repair and genetic recombination protein RecN [Streptococcus
           gallolyticus UCN34]
 gi|288731569|emb|CBI13124.1| DNA repair and genetic recombination protein RecN [Streptococcus
           gallolyticus UCN34]
          Length = 552

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 75/215 (34%), Gaps = 31/215 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLTFENGMTVLTGETGAGKSIIIDAMNLMLGAR-----ASLDVIR 56

Query: 67  IGSPSFFSTFARVEGM--------------EGLADISIKLETRDD---RSVRCLQINDVV 109
            G+       A +EG+              E   D++ +L  R D         +IN  +
Sbjct: 57  HGANK-----AEIEGLFSVGENPALTQILEENGIDVTEELIIRRDILQNGRSIGRINGQM 111

Query: 110 IR--VVDELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERL 165
           +    +  + ++L         + +       R    F +     +   ++     + +L
Sbjct: 112 VNLTTLRAVGQYLVDIHGQHDQEELMKPNMHIRMLDEFGNEQFADVKKHYQELFESYRQL 171

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
            +             +    +E Q+AE+      A
Sbjct: 172 RKRVVTKQKNEQEHKARIEMLEFQIAEIEAAALKA 206


>gi|283458434|ref|YP_003363058.1| DNA repair ATPase [Rothia mucilaginosa DY-18]
 gi|283134473|dbj|BAI65238.1| ATPase involved in DNA repair [Rothia mucilaginosa DY-18]
          Length = 572

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 55/385 (14%), Positives = 116/385 (30%), Gaps = 60/385 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I I+ L I         RL  +   ++  G+ G GKT ++ A+  L   R      
Sbjct: 1   MIEEIHIRDLGI-----ITDARLPLEPGFSVLTGETGAGKTMVVTALGMLLGARS----- 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD---------------------DRS 99
            A   R G+ S  +  A +    G   + +  E                         RS
Sbjct: 51  DASSVRNGAKSALAE-AVIRLPHGHRALELAEEAGGTAEDIDEQTSELLLARTVNASGRS 109

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRH 155
              +      I  + ++ + L         D++    + E+R  LD      +  +  ++
Sbjct: 110 RAHVGGCSAPIGTLSQIGQTLVAV--HGQSDQLRLKSAAEQRHSLDLYAGEELANLLEKY 167

Query: 156 RRRMIDFERL---MRG-RNRLLTEGYFDSSWCSSIEAQMA---ELGVKINIARVEMINAL 208
           R     +      ++  R           +   ++E   A   + G +  +   EM+  +
Sbjct: 168 RENYERYRAAAAELKEVRENSRARALEAQTLQGALEEISAVNPQAGEEEELK-AEMVKLM 226

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
           +   +E ++  +                +QS  +L +     L      D          
Sbjct: 227 N---VEALRIASATASAALSGSEYSTGDEQSVMSLLDASRSALQAQADADEELASLAARV 283

Query: 269 HRSDLIVDYCDKAITIAHGS---TGEQKVVLVGIFLAHARLISNTTGFAPILLL---DEI 322
           +   ++       ++    S    G +++  V    A    ++   G     +L   +E 
Sbjct: 284 NELLILATDISSDLSSYMASLDVEGPERLAQVQTRRAQLATLTRKYGADIAEVLEWAEES 343

Query: 323 SAHL-----DEDKRNALFRIVTDIG 342
            A L     D  ++  L   +  + 
Sbjct: 344 RARLETLVDDPQRQETLETELVQLR 368


>gi|228982472|ref|ZP_04142731.1| metallophosphoesterase [Bacillus thuringiensis Bt407]
 gi|228776655|gb|EEM24963.1| metallophosphoesterase [Bacillus thuringiensis Bt407]
          Length = 802

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRR 58
           I  + +  F+++ +  L F     +F G++G GK+ ++ A +F+  + GR  RR
Sbjct: 356 ITKMVLENFQSHENTTLDFSKGLNLFTGESGQGKSAVIRAFAFIFENFGRNPRR 409


>gi|328874190|gb|EGG22556.1| structural maintenance of chromosome protein [Dictyostelium
           fasciculatum]
          Length = 1442

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 7   IKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYA 62
           I+ L I  F++YA  + L  F    +  +G NG GK+N+L++I F+     +  R    +
Sbjct: 192 IEKLEIENFKSYAGKVELGPFHKCFSSVIGPNGSGKSNVLDSIRFVFGERAKNIRFNKIS 251

Query: 63  DVTRIGSPSFFSTFARV 79
           ++    S     T ARV
Sbjct: 252 ELIHNSSTHKGLTEARV 268


>gi|257124847|ref|YP_003162961.1| ATP-binding protein involved in virulence-like protein
           [Leptotrichia buccalis C-1013-b]
 gi|257048786|gb|ACV37970.1| ATP-binding protein involved in virulence-like protein
           [Leptotrichia buccalis C-1013-b]
          Length = 420

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 59/380 (15%), Positives = 119/380 (31%), Gaps = 72/380 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-----HTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           +KIK L+I E+    +L + F+++       +  G NG GKT +LE+             
Sbjct: 1   MKIKNLHIEEYNGLENLDINFESEGKVLDLIVLAGINGSGKTRVLES------------- 47

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
                 R     F S    VE      +  +     +   +  +   +   +   E    
Sbjct: 48  -----IRYWFEMFRSKAVNVELFYEENEREVLESLMNSEGLTEV---EKEAQKDIEFTDC 99

Query: 120 LRISWLVPSMDRIFS------GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           L+         R            +  R F    +F     +    I+FE + +     L
Sbjct: 100 LKNIKFYNYDYRHNKTENQNYNSKIISRSFRKLKIFP-KIIYVPTEINFEEI-KKAQTNL 157

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            + Y   +   S E                 I  + S I   + K       L++     
Sbjct: 158 KKEYSFINIVDSYE-----------------IKDIPSYIATRISKVANEEEDLTMGQVRK 200

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
             F++            +F+  ++D          +   +  +   K   I   S+GE++
Sbjct: 201 KVFEE---------INGIFEILELDVKLSEISKDENSMPIFTNSSGKKFGINELSSGEKQ 251

Query: 294 VVL--VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTG 349
           + L  + I +              I+++DE    L    +  +  +   IG  +QI +  
Sbjct: 252 LFLRTLAIKMLE--------PENSIIMIDEPELSLHPKWQQKIIDVYKKIGKNNQIILAT 303

Query: 350 TDKSVFDSLNETAKFMRISN 369
               +  S+ + +  + + N
Sbjct: 304 HSPHILGSVEKESIILLVKN 323


>gi|154149264|ref|YP_001406217.1| hypothetical protein CHAB381_0630 [Campylobacter hominis ATCC
          BAA-381]
 gi|153805273|gb|ABS52280.1| conserved hypothetical protein [Campylobacter hominis ATCC
          BAA-381]
          Length = 513

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KIK + +  FR Y+   +V     T+ VG N VGK+ ILEA+
Sbjct: 1  MKIKSMKVKNFRGYSDEIIVNFDDLTVIVGKNDVGKSTILEAL 43


>gi|32328841|emb|CAD66596.2| SMC protein [Desulfitobacterium hafniense]
          Length = 1205

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 7  IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
          +K + I  F+++A  ++L      ++ VG NG GK+N+ +AI ++      +  R +   
Sbjct: 18 LKSITIQGFKSFADKVKLELGQGLSVVVGPNGSGKSNVADAIRWVLGEQSAKNLRGSKME 77

Query: 63 DVTRIGS 69
          DV   GS
Sbjct: 78 DVIFSGS 84


>gi|58582036|ref|YP_201052.1| chromosome segregation protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58426630|gb|AAW75667.1| chromosome segregation protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1218

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 52  MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 111

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDV 108
             DV   GS +    + A VE +   +D +I  E                      +N  
Sbjct: 112 LTDVIFSGSSARKPVSQATVELIFDNSDHTISGEFASFNEISVKRLVSRDGNSAYYLNGT 171

Query: 109 VIRVVD 114
             R  D
Sbjct: 172 KCRRRD 177


>gi|37527248|ref|NP_930592.1| recombination and repair protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786682|emb|CAE15748.1| DNA repair protein recN (recombination protein N) [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 553

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 78/231 (33%), Gaps = 37/231 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      RG      A++ R
Sbjct: 2   LTQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAIDALGLCLGNRG-----EANMVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     ++   +  ++     D   R   IN   V I 
Sbjct: 57  RGASRADICARFSLSDTPSARQWLEAHQLDDSNECLLRRTITSDGRSRGF-INGTAVPIS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL  HL       +   + +     ++R LD               + +  M+   +
Sbjct: 116 QLRELGTHLIQIHGQHAHQLLLNNG--HQKRLLDTYANQF---------NLQNEMKQAYQ 164

Query: 172 LLTEGYFDSS--WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
              +   D +     ++E Q      ++    ++ +N L+    EY +++N
Sbjct: 165 QWHQSCQDLARFQQQALERQ---SRQQLLEYHLKELNELAPQPGEYPEQDN 212


>gi|313888022|ref|ZP_07821700.1| DNA repair protein RecN [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845977|gb|EFR33360.1| DNA repair protein RecN [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 553

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 63/192 (32%), Gaps = 24/192 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI  F    ++++ F+    +  G+ G GK+ I++++  +   R     +  D+ +
Sbjct: 2   LLELNIENFAIIENMKIEFEPSLNVLTGETGSGKSIIIDSLGLVLGQR-----ANKDIIK 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDD-----------RSVRCLQINDVVI--RVV 113
            G    F         E   D+ ++                 +     ++N+  +  +++
Sbjct: 57  KGKDRAFIEAVFSSYDEETKDLLLEYGIESGDLVVVSKEIREKGPTITRVNNRTVTSQIL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
            +++ HL   +       +       + + +D             +    + +      L
Sbjct: 117 SKISSHLIDIFAQHESISLMDN--KNQLKLIDDFSGKDQGELLENL----KYLVHEINSL 170

Query: 174 TEGYFDSSWCSS 185
              Y + S    
Sbjct: 171 KNEYHEKSTMEQ 182


>gi|300707868|ref|XP_002996127.1| hypothetical protein NCER_100830 [Nosema ceranae BRL01]
 gi|239605398|gb|EEQ82456.1| hypothetical protein NCER_100830 [Nosema ceranae BRL01]
          Length = 843

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRA 59
          + IK + +  F+ Y +  +       +    G NG GK+NI++ I F          R  
Sbjct: 1  MYIKDIILDGFKIYENKTVIRNLTKSYNAITGLNGSGKSNIIDGIIFALGLESRKLLRAN 60

Query: 60 SYADVTR 66
          S  ++  
Sbjct: 61 SLKELIN 67


>gi|227485059|ref|ZP_03915375.1| DNA repair protein RecN [Anaerococcus lactolyticus ATCC 51172]
 gi|227236892|gb|EEI86907.1| DNA repair protein RecN [Anaerococcus lactolyticus ATCC 51172]
          Length = 562

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 64/176 (36%), Gaps = 11/176 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F       + F+ +  +  G+ G GK+ ILEAI+ LS G+  R +    +  
Sbjct: 2   LAELYIDNFIIIKKDHIFFEDKFNVLTGETGSGKSIILEAINLLS-GK--RASKDI-IGN 57

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDR--SVRCLQINDVVIRVVDELNKHLRISW 124
               S       ++        ++ +   DD+    R +  N   IR+   L+    +  
Sbjct: 58  FKDQSIIEAVFLLKDDLIQKLTNLGISFDDDKLIITRNIGKNSSSIRINGRLSNINILKE 117

Query: 125 LVPSMDRIFSGLSM----ERRRFLDRM-VFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           +   +  ++          +  ++D +  +  D + +        L + +N  L  
Sbjct: 118 ISDDLIDVYKQGDSNIYMNKANYVDLIDSYQNDGKTKDIRSKLASLFKEKNDYLRR 173


>gi|295666121|ref|XP_002793611.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226277905|gb|EEH33471.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1169

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 10/110 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +++F  Y S       +  + +G NG GK+ +      L      R    A+  +
Sbjct: 130 IVRVKLTDFVTYTSAEFFPGPRLNMVIGPNGTGKSTL-----HLG-----RAKDPAEFVK 179

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            G           +G     +  I+       +     +N         L
Sbjct: 180 HGCEEATIEIELAKGPAHRQNPIIRRTIVRRDNKSTFTLNGKPSTKARVL 229


>gi|281421324|ref|ZP_06252323.1| putative RecF/RecN/SMC N domain protein [Prevotella copri DSM
          18205]
 gi|281404396|gb|EFB35076.1| putative RecF/RecN/SMC N domain protein [Prevotella copri DSM
          18205]
          Length = 362

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 12/76 (15%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGF------- 56
          I  + +  ++++    +  D+   I +G N  GK+N+L+A +FL     G+         
Sbjct: 2  ITKIRLQNWKSFKDSTIYIDS-LGILIGTNASGKSNVLDAFAFLRAVGEGKSLLDAIQTV 60

Query: 57 RRASYADVTRIGSPSF 72
          R      + R G   F
Sbjct: 61 RGGEDW-IIRRGEDFF 75


>gi|242007208|ref|XP_002424434.1| structural maintenance of chromosome, putative [Pediculus humanus
          corporis]
 gi|212507834|gb|EEB11696.1| structural maintenance of chromosome, putative [Pediculus humanus
          corporis]
          Length = 1186

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
          + +K + I  F++Y     +  FD +     G NG GK+NIL+AI F+   +     R  
Sbjct: 1  MFVKSIVIDGFKSYGRRTEISGFDREFNAITGLNGSGKSNILDAICFVLGLQNLGQVRAT 60

Query: 60 SYADVT 65
             D+ 
Sbjct: 61 LLQDLV 66


>gi|169628512|ref|YP_001702161.1| hypothetical protein MAB_1421 [Mycobacterium abscessus ATCC
          19977]
 gi|169240479|emb|CAM61507.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 874

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFL 50
          +K+  L+++ +R      + F      +  G N VGKT+++EA+  L
Sbjct: 1  MKLHRLSVTNYRGITHRDITFPERGVVVVGGANEVGKTSMIEALDLL 47


>gi|327273419|ref|XP_003221478.1| PREDICTED: structural maintenance of chromosomes protein 1B-like
           [Anolis carolinensis]
          Length = 1236

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63
           +K L +  F+++     +    + +  +G NG GK+N+++A+SF+   +    R     +
Sbjct: 4   LKLLVVENFKSWRGKQCIGPFKKFSCVIGPNGSGKSNVMDALSFVMGEKITNLRVKHIRE 63

Query: 64  VTRIGSPSF--FSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVVIRVV---DELN 117
           +   G+      S+ A V  +    +   K   R  R       IND V+       EL 
Sbjct: 64  LI-HGAHVGKPISSTASVRMIYREENGEEKTFARIIRGNGSEFLINDSVVNRSVYTKELG 122

Query: 118 KH------LRISWLVPSMDRIFSGLSMERRRFLD 145
           K                ++ I      ER + L+
Sbjct: 123 KIGIITRAKNCLVFQGEVETIAMKKPKERTQLLE 156


>gi|322388873|ref|ZP_08062465.1| hypothetical protein HMPREF9423_1863 [Streptococcus infantis ATCC
          700779]
 gi|321140256|gb|EFX35769.1| hypothetical protein HMPREF9423_1863 [Streptococcus infantis ATCC
          700779]
          Length = 677

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          ++I  +NI  +R      L   ++ ++ VG N  GKT++L
Sbjct: 1  MRINKINIRNYRLLKDFSLELKSELSLIVGKNNCGKTSVL 40


>gi|328782551|ref|XP_001120037.2| PREDICTED: structural maintenance of chromosomes protein 5-like
           [Apis mellifera]
          Length = 1050

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 9/131 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I ++ +  F  Y  + +       + +G NG GK+ I+ AI     G+     R    AD
Sbjct: 9   ITYIYLENFVTYNKVCIKPGRNLNVIIGPNGTGKSTIVCAIVLGLGGKPSTIGRAIHVAD 68

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             + G            G +    I  ++     +S+  L      I+ + EL K   I 
Sbjct: 69  YVKRGCEEAKVEIHLKNGKKNDIIIQ-RIFNISGKSLWFLDERPSNIKEIQELIKTFNIQ 127

Query: 124 W-----LVPSM 129
                  +P  
Sbjct: 128 VDNLCQFLPQD 138


>gi|257470078|ref|ZP_05634170.1| DNA repair protein recN [Fusobacterium ulcerans ATCC 49185]
 gi|317064302|ref|ZP_07928787.1| DNA repair protein recN [Fusobacterium ulcerans ATCC 49185]
 gi|313689978|gb|EFS26813.1| DNA repair protein recN [Fusobacterium ulcerans ATCC 49185]
          Length = 554

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 84/265 (31%), Gaps = 46/265 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L F     +  G+ G GK+ IL  I+ L   +     +  D+ R
Sbjct: 2   LRELKIENLAIIDELDLEFANGLIVLTGETGAGKSIILSGINLLIGEK-----ASVDMIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADIS----IKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
            G     +        E   ++S    I+ E  +    R L  N            ++R+
Sbjct: 57  SGEDHLLAQGVFEINDEQAEELSAHFGIETEDNEVIVRRYLDKNG----KGKAFVNNIRV 112

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
           S    +  +   G        L  +V     +      +  RL+                
Sbjct: 113 SL---NSLKDVMGT-------LVDIVGQHSHQMLLNKNNHIRLL---------------- 146

Query: 183 CSSIEAQMAELGVKINIARVEM------INALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
              +  +   L   I     E       I+ +     E ++K  F   +L+    ++ + 
Sbjct: 147 DKFLGEEGKALRENIAKKYNECRDVVSQIDNIEKNRQEAIEKREFYEFQLAEIDRVNPQL 206

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMS 261
           ++    L+EEY K    G+  D + 
Sbjct: 207 EEDV-KLEEEYKKLFNAGKIKDKIL 230


>gi|237734655|ref|ZP_04565136.1| DNA repair protein [Mollicutes bacterium D7]
 gi|229382475|gb|EEO32566.1| DNA repair protein [Coprobacillus sp. D7]
          Length = 403

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 67/209 (32%), Gaps = 34/209 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  F     L + F    T+  G+ G GK+ I++AI  L   R       +   +
Sbjct: 2   LESIYIENFAIIDRLEVDFHNHMTVLTGETGAGKSIIIDAIGQLMGNRS-----QSSFIK 56

Query: 67  IGSPSFFSTFARVEG-----MEGLADISIKLETR-------DDRSVRCLQINDVVIRV-- 112
                 F       G     +  L +  I  E +       +  +   ++IN   +    
Sbjct: 57  ADCDECFIEGVFTIGAKSPVLNKLKEYRIDYEDKLVVSKSFNRDNKSIIKINYRNVSKMV 116

Query: 113 --------VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                   +D  ++    S        I          F+++ +  +   +      +  
Sbjct: 117 LQSIMADLIDIHSQFETHSLFDAENHLIILD------EFINQPLKKLFQTYSLAYRTYRE 170

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           + R   + L E   D       +AQ+AE+
Sbjct: 171 INRDYQKALNEELSDE-QLEFYQAQLAEI 198


>gi|238854799|ref|ZP_04645129.1| DNA repair protein RecN [Lactobacillus jensenii 269-3]
 gi|260664030|ref|ZP_05864883.1| DNA repair protein RecN [Lactobacillus jensenii SJ-7A-US]
 gi|282933877|ref|ZP_06339225.1| DNA repair protein RecN [Lactobacillus jensenii 208-1]
 gi|313472308|ref|ZP_07812800.1| DNA repair protein RecN [Lactobacillus jensenii 1153]
 gi|238832589|gb|EEQ24896.1| DNA repair protein RecN [Lactobacillus jensenii 269-3]
 gi|239529841|gb|EEQ68842.1| DNA repair protein RecN [Lactobacillus jensenii 1153]
 gi|260561916|gb|EEX27885.1| DNA repair protein RecN [Lactobacillus jensenii SJ-7A-US]
 gi|281301966|gb|EFA94220.1| DNA repair protein RecN [Lactobacillus jensenii 208-1]
          Length = 561

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    +L++ F    T+ +G+ G GK+ +++A+S L    G R  S  ++ R
Sbjct: 2  LVELDIQNFAIIKNLKIKFKKNMTVLIGETGAGKSILIDALSLLL---GHRAQS--EMIR 56

Query: 67 IGSPSFFST 75
           G      T
Sbjct: 57 SGEKKAIVT 65


>gi|119952850|ref|YP_945059.1| chromosome partition protein Smc [Borrelia turicatae 91E135]
 gi|119861621|gb|AAX17389.1| chromosome partition protein Smc [Borrelia turicatae 91E135]
          Length = 821

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 1   MTNRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGF 56
           M   + ++ + +  F+++     L  ++     VG NG GK+N+L+AI F          
Sbjct: 1   MGVALFLEKIGLLGFKSFVKMQELKLNSSLNFIVGPNGCGKSNLLDAIRFCIGEDNLSVL 60

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
           R     D+      S  S FA V       D+S+          R L  +  
Sbjct: 61  RVKYITDLIS-DVKSGESNFAEVTLFFNNEDLSVSDFRDRFYIRRRLYKDGT 111


>gi|149919822|ref|ZP_01908298.1| nuclease SbcCD, C subunit [Plesiocystis pacifica SIR-1]
 gi|149819269|gb|EDM78702.1| nuclease SbcCD, C subunit [Plesiocystis pacifica SIR-1]
          Length = 646

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 98/321 (30%), Gaps = 80/321 (24%)

Query: 5   IKIKFLNISEFRNYASLRLVFD----------AQHTIFVGDNGVGKTNILEAISFLSPGR 54
           +KI  L +   +N ASL   F+          A      G  G GKT +L+AI      R
Sbjct: 1   MKI--LAVRG-KNLASLHGHFEVDFRAPPLDRAGLVAITGPTGAGKTTLLDAICLALFDR 57

Query: 55  GFR----------------------RASY-ADVTRIGS-------------PSFFSTFAR 78
             R                      RA+    + R G+                ++    
Sbjct: 58  TPRFANRGGVTIGRAPGGAPGEGGLRANDVRGILRHGAVDGWAEVDFLGVDDRVWTARWE 117

Query: 79  VEGMEGLADISI---KLETRDDRSVRCLQINDV-------VIRVVDELNKHLRISWLVPS 128
           V    G  D  I   +++  D  + R ++ +           R+  + ++  R   L   
Sbjct: 118 VRRARGRHDGRIQGQQMKLSDAVTGRAVEADRKLDVLEAIEARLGLDFDQFRRSVLLAQG 177

Query: 129 MDRIFSGLS-MERRRFLDRMVFAIDPRHRRR-MIDFERLMRGRNRLLTEGYFDSSWCSSI 186
               F   S  +R   L+RM       +R      FER  +  +  L     +     S+
Sbjct: 178 EFAAFLEASGSDRAELLERMTGT--RLYRELGRAAFERA-KQADAELDLLRRELDGLDSL 234

Query: 187 EA----QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
           +     Q+      +  AR E+     +      + +   H +L       G+ ++    
Sbjct: 235 DEAARTQLKAQVEALTQARAEL-----TRARAQAEADRTWHARL-------GELERGAAR 282

Query: 243 LKEEYAKKLFDGRKMDSMSRR 263
            K E        R +D  +R 
Sbjct: 283 AKAEVEGAEQALRALDGDART 303


>gi|124485332|ref|YP_001029948.1| hypothetical protein Mlab_0507 [Methanocorpusculum labreanum Z]
 gi|124362873|gb|ABN06681.1| ATPase-like protein [Methanocorpusculum labreanum Z]
          Length = 373

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +I  + I  FR+  S  L       I +G NG GK+N L
Sbjct: 16 QIDRITIRGFRSIRSCDLKLRD-INILIGANGAGKSNFL 53


>gi|114328528|ref|YP_745685.1| chromosome partition protein smc [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316702|gb|ABI62762.1| chromosome partition protein smc [Granulibacter bethesdensis
           CGDNIH1]
          Length = 1523

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 16/123 (13%)

Query: 8   KFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYAD 63
             L I+ F+++A    +      T  VG NG GK+N++EA+ +       R  R     D
Sbjct: 6   SRLRIAGFKSFADPQSIEILPGLTGVVGPNGCGKSNVVEALRWAMGENSARALRGGEMDD 65

Query: 64  VTRIGSP-----SFFSTFARVEGMEGLAD------ISIKLETRDDR-SVRCLQINDVVIR 111
           V   G+      +       +E + G A         +++  R +R      +IN   +R
Sbjct: 66  VIFAGTAHRSSRNLAEVVLSLEDVAGQAPPPFGEVPELEISRRIERGGGSTYRINGREVR 125

Query: 112 VVD 114
             D
Sbjct: 126 ARD 128


>gi|37651524|ref|NP_932398.1| gp46 [Aeromonas phage 44RR2.8t]
 gi|66391846|ref|YP_238771.1| gp46 [Aeromonas phage 31]
 gi|34732824|gb|AAQ81362.1| recombination endonuclease subunit [Aeromonas phage 44RR2.8t]
 gi|62114683|gb|AAX63531.1| gp46 [Aeromonas phage 31]
          Length = 570

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 6   KIKFLNISEFRNY-----ASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           ++ F+ +  ++N        + L  +    T+  G NG GK+ +LEAI F   G+ FR  
Sbjct: 8   QLDFIRVR-YKNIMSVGDEPIDLTLNEYAKTLCTGKNGAGKSTMLEAIYFALFGKPFRDI 66

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
           +   +    +         +E  E +  I+  ++   
Sbjct: 67  TKNQLINENTGKNMLVELWLEYEEKVYHITRGIKPNK 103


>gi|332667999|ref|YP_004450787.1| hypothetical protein Halhy_6092 [Haliscomenobacter hydrossis DSM
          1100]
 gi|332336813|gb|AEE53914.1| hypothetical protein Halhy_6092 [Haliscomenobacter hydrossis DSM
          1100]
          Length = 448

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +  + ++ FR +   + + F+   T+F+  NG GKT +L+A+ 
Sbjct: 16 VDRIKLASFRGFQNEVEIHFEPDLTVFIAQNGGGKTTVLDALY 58


>gi|294787549|ref|ZP_06752802.1| DNA repair protein RecN [Parascardovia denticolens F0305]
 gi|315226865|ref|ZP_07868653.1| DNA repair protein RecN [Parascardovia denticolens DSM 10105]
 gi|294484905|gb|EFG32540.1| DNA repair protein RecN [Parascardovia denticolens F0305]
 gi|315120997|gb|EFT84129.1| DNA repair protein RecN [Parascardovia denticolens DSM 10105]
          Length = 594

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 78/268 (29%), Gaps = 16/268 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYADV 64
           ++ L I          L      T   G+ G GK+ +L AI  LS    +  R A  AD 
Sbjct: 2   LEELEIQSLGPIHQAVLRPQPGMTAITGETGAGKSMLLSAIQLLSGSDAQSQRVAPGADH 61

Query: 65  TR-------IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                     G     S  AR        ++ +          RC      V R + E  
Sbjct: 62  AWVQGIFDVAGEEDVQSLAARAGSPCDEGELFVSRTVPAQGRSRCYANGKTVPRSLLEQL 121

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR--GRNRLLTE 175
                  +    +++    S  +R FLDR     D         ++ + +   +   L +
Sbjct: 122 SSF-TVTIHGQAEQLKLASSAHQRAFLDRCCGD-DQELADYQTAYQAVRKADEKLEHLVQ 179

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVE---MINALSSLIMEYVQKENFPHIKLSLTGFL 232
                   +    +  +   KI   R E   +    + +       +      ++L    
Sbjct: 180 EQSQIQAQADYLRESIDRIDKIGPQRGEDDALREQRTRIESAADISQAVQRALMALDSSQ 239

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           +G    S   L E+  + L      D  
Sbjct: 240 EGGDQASAADLLEQAVRVLESSAARDLF 267


>gi|255595159|ref|XP_002536238.1| conserved hypothetical protein [Ricinus communis]
 gi|223520335|gb|EEF26146.1| conserved hypothetical protein [Ricinus communis]
          Length = 344

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISF 49
           +++  L +  FR ++      F   +T   G NG GK+++ EA+ +
Sbjct: 81  VRLTKLEVEHFRGFSEKHTFEFKNPYTFVYGPNGTGKSSLCEALEY 126


>gi|156540772|ref|XP_001600265.1| PREDICTED: similar to LP09268p [Nasonia vitripennis]
          Length = 1307

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 6  KIKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +IK L I   RN+    A + + F    T+ +G NG GKT I+EA+ F++ G
Sbjct: 3  RIKDLEIRGIRNFGDERAKVLIHFSKPLTLILGPNGTGKTTIIEALKFVTSG 54


>gi|148263769|ref|YP_001230475.1| DNA repair protein RecN [Geobacter uraniireducens Rf4]
 gi|146397269|gb|ABQ25902.1| DNA replication and repair protein RecN [Geobacter uraniireducens
          Rf4]
          Length = 553

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I       +L + F     I  G+ G GK+ I++A++ +  GR     + AD+ R
Sbjct: 2  LTDLSIKNIAIIDTLHVSFQPGLNILTGETGAGKSIIIDAVNLILGGR-----ASADLIR 56

Query: 67 IGSPSFFS 74
           G+     
Sbjct: 57 TGADEGVV 64


>gi|85710935|ref|ZP_01041996.1| ABC transporter ATP-binding protein [Idiomarina baltica OS145]
 gi|85695339|gb|EAQ33276.1| ABC transporter ATP-binding protein [Idiomarina baltica OS145]
          Length = 708

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 106/314 (33%), Gaps = 47/314 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFD----AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +K+    IS FR   SL L F      + T+    N  GKT  L A+ +   G       
Sbjct: 1   MKLISAKISNFRLLKSLSLDFSTDHEKKLTVIRAANETGKTTCLNALLWCFYGS------ 54

Query: 61  YADVTRIGSPSFF----STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI-RVVDE 115
              + + G  S F       ++   +    D  ++L   + R +  +  N   I R  +E
Sbjct: 55  -KALPQRGHYSLFPSDEKNHSKKVKVAVEIDFEVELAESNRRGMSSVSRNRYKIERSCEE 113

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF---------AIDPRHR----RRMIDF 162
            ++     +    + +++   S    R LD  V          ++   +       M   
Sbjct: 114 YSESKGGQFRDHEIVQLWKITSTGAERILDSEVKDVIEATLPESLRNVYFTDGDSAMSFI 173

Query: 163 ERLMRGRNRLLTEGYFDSSW--CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           E       +         S    + ++A +  LG        +++N  S  I        
Sbjct: 174 EAAASQGQKRKRVATAIESLLGLNVLDATIKHLG--------QVVNKFSQEIDNTDYARE 225

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
              +   ++G     +++      +E  +  F  R+ +  +    I   R DL +   +K
Sbjct: 226 IEELNDKMSG-----YEEDIEEWSQELTE--FHERQKELEAELRQINSKREDL-IRLGNK 277

Query: 281 AITIAHGSTGEQKV 294
           ++ I   S  E+++
Sbjct: 278 SVLIERKSKAERRI 291


>gi|312793518|ref|YP_004026441.1| DNA repair protein recn [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180658|gb|ADQ40828.1| DNA repair protein RecN [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 551

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 31/208 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I        L + FD   TI  G+ G GK+ I++++S L   + F+     ++ R
Sbjct: 2   LKRLLIENIAIIDRLDIEFDKGLTILTGETGAGKSIIIDSLSLLLGTK-FK----KEIIR 56

Query: 67  IGS-PSFFSTFARVE---GMEGLADISIKLETR--------DDRSVRCLQIN-------- 106
            G   +  S    +E    +E L  + I LE                  ++N        
Sbjct: 57  TGCTKACVSVVFEIEKKSAIERLTQMGISLEDNFLIVSREVYSSGKNICRVNNQFVLLST 116

Query: 107 -DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
              + + + E++       L     ++         RF  + +  +   ++    D++  
Sbjct: 117 LREITKHIFEIHGQNETHLLNDKRIQLLYID-----RFCGKELEELKAEYKDLYHDYQEK 171

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
            R   +++T+          +  Q+ E+
Sbjct: 172 KRLYEQIITKEEERERQLDLLNYQINEI 199


>gi|260434235|ref|ZP_05788206.1| DNA repair protein RecN [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418063|gb|EEX11322.1| DNA repair protein RecN [Silicibacter lacuscaerulensis ITI-1157]
          Length = 549

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +      L L F        G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2   LRALDIRDMLIIDRLELTFQPGLNALTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--QINDVVIRV 112
            G+       A  E  E     +I  E         +  ++N    R 
Sbjct: 57  QGAAQG-EVVAEFELPENHPAHAILAEAGLPGGSELILRRVNTAEGRK 103


>gi|238882443|gb|EEQ46081.1| conserved hypothetical protein [Candida albicans WO-1]
          Length = 1368

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            R+ I  L +++F++YA  ++   F +  +  VG NG GK+N+++++ F+   R    R+
Sbjct: 145 PRLVIDRLVLTDFKSYAGKKVIGPFHSSFSAVVGPNGSGKSNVIDSMLFVFGFRASKMRQ 204

Query: 59  ASYADVTR 66
              +++  
Sbjct: 205 GKLSELIH 212


>gi|261364938|ref|ZP_05977821.1| conserved hypothetical protein [Neisseria mucosa ATCC 25996]
 gi|288566730|gb|EFC88290.1| conserved hypothetical protein [Neisseria mucosa ATCC 25996]
          Length = 395

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 71/399 (17%), Positives = 135/399 (33%), Gaps = 63/399 (15%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +KIK + I     ++ +  L F+    I  G NG GKT IL+ I ++  G       + D
Sbjct: 1   MKIKSVKIFGLHKHSEIINLTFNDDLNIITGRNGAGKTTILKLIWYVLSG-------HID 53

Query: 64  VTRIGSPSFFSTFARVE----GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +  I    F       +     +  +   + K+E R +   +     D V          
Sbjct: 54  LA-IKEIEFDKLVVCTDIYKCSINKINKNTCKVEWRWENKEKEEVFEDQVEHR-SFYYGE 111

Query: 120 LRISWLVPSMDRIFSGLSME--RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
              + +V   D I    + E   RR  +       P  RR    F   +     L     
Sbjct: 112 DGETIIVDEDDGIIIQNAEEIPNRRLQNTGASVFLPTFRRIEGGF---LTDSRPLSRRLS 168

Query: 178 FDS-SWCSSIEAQMAELGVKINIARVEMINALSSL-----IMEYVQKENFPHIKLSLTGF 231
           F+S S  +SIE  ++ L  ++ +     + +LS+      +++   + +  + ++     
Sbjct: 169 FESFSATASIEEALSNLSDRLTVNNHIFVASLSTFDIESLLIKKHSELSEKYNRIQQKVT 228

Query: 232 LD-----GKFDQSFCALKEEYAKKLF------DGRKMDSMS----------------RRT 264
            D      K  +S    +E+  K +       + R+ + M                 R  
Sbjct: 229 SDTMDRIKKSRESNGDAQEDILKLIQKDIEEMEKRRQEIMKPLDTVKESVLKFFKNHRGI 288

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
            +G  +  L       AI     S GE++++     LA+     +      I ++DE   
Sbjct: 289 KLGKSKV-LNFGDAANAINSNFLSAGEKQMLSF---LAYNTFYKDA-----IFIIDEPEL 339

Query: 325 HLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNET 361
            L  D +  L   +   G+  Q  +      ++    E 
Sbjct: 340 SLHVDWQRILLSTLVKQGTSNQFIVATHSPFIYSKYPEK 378


>gi|33863851|ref|NP_895411.1| SMC ATPase superfamily chromosome segregation protein
          [Prochlorococcus marinus str. MIT 9313]
 gi|33635434|emb|CAE21759.1| putative chromosome segregation protein, SMC ATPase superfamily
          [Prochlorococcus marinus str. MIT 9313]
          Length = 1202

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 9/92 (9%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  + +++F+++  S+ +  +   T+  G NG GK+NIL+ + F   L+  RG R   
Sbjct: 2  VHINQVGLTQFKSFGGSMTIPLEEGFTVVTGPNGSGKSNILDGVLFCLGLATSRGMRADR 61

Query: 61 YADVT-----RIGSPSFFSTFARVEGMEGLAD 87
            D+      R G  +      R +  +   D
Sbjct: 62 LPDLVNSRILRAGKAAETVVSVRFDLSDWKPD 93


>gi|219669829|ref|YP_002460264.1| chromosome segregation protein SMC [Desulfitobacterium hafniense
          DCB-2]
 gi|219540089|gb|ACL21828.1| chromosome segregation protein SMC [Desulfitobacterium hafniense
          DCB-2]
          Length = 1198

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 7  IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
          +K + I  F+++A  ++L      ++ VG NG GK+N+ +AI ++      +  R +   
Sbjct: 11 LKSITIQGFKSFADKVKLELGQGLSVVVGPNGSGKSNVADAIRWVLGEQSAKNLRGSKME 70

Query: 63 DVTRIGS 69
          DV   GS
Sbjct: 71 DVIFSGS 77


>gi|68478241|ref|XP_716862.1| potential nuclear condensin complex SMC ATPase [Candida albicans
           SC5314]
 gi|68478362|ref|XP_716802.1| potential nuclear condensin complex SMC ATPase [Candida albicans
           SC5314]
 gi|46438486|gb|EAK97816.1| potential nuclear condensin complex SMC ATPase [Candida albicans
           SC5314]
 gi|46438548|gb|EAK97877.1| potential nuclear condensin complex SMC ATPase [Candida albicans
           SC5314]
          Length = 1368

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            R+ I  L +++F++YA  ++   F +  +  VG NG GK+N+++++ F+   R    R+
Sbjct: 145 PRLVIDRLVLTDFKSYAGKKVIGPFHSSFSAVVGPNGSGKSNVIDSMLFVFGFRASKMRQ 204

Query: 59  ASYADVTR 66
              +++  
Sbjct: 205 GKLSELIH 212


>gi|312885009|ref|ZP_07744698.1| recombination and repair protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367341|gb|EFP94904.1| recombination and repair protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 554

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 86/254 (33%), Gaps = 34/254 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLDLSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  + L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFSLDNNINATRWLEDNDLLEGTDCILRRIISKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           +  L + L       +  ++            D  +  +D ++         L R RN  
Sbjct: 117 LKALGQLLINIHGQHAHHQLMRS---------DHQMAMLD-QYAGH---HNLLKRTRNTY 163

Query: 173 LTEGYFDSSWCSSIEAQMAELGV-KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                 D+      E   A L   ++   +++ +N LS    EY Q E   H +LS +G 
Sbjct: 164 QNWRQADNHLKQLQENSAANLAQKQLLEYQIKELNELSLGEEEYEQLEQE-HKRLSNSGE 222

Query: 232 LDGKFDQSFCALKE 245
           L     Q+   + E
Sbjct: 223 LASSCQQAIELIYE 236


>gi|291166545|gb|EFE28591.1| DNA repair protein RecN [Filifactor alocis ATCC 35896]
          Length = 561

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 12/132 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + I  F   + L +  +   T+  G+ G GK+ I++AIS L  GR  R +   +  R
Sbjct: 2   LKEIYIENFALISQLHIDINRGFTVITGETGSGKSIIIDAIS-LCLGR--RGSK--EFVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISI-KLETRDDRS---VRCLQINDVVIRVVDELNKHLRI 122
            G         R+E +    +  + ++    D      R LQ +   +  ++   + + +
Sbjct: 57  HGEDKAI-IELRLENLPKKIEKELSEIGIDTDGQLIVTRELQKDGSSVSRMNR--RMVPV 113

Query: 123 SWLVPSMDRIFS 134
           S L   M  + +
Sbjct: 114 SVLKSVMMDLIT 125


>gi|260776589|ref|ZP_05885484.1| DNA repair protein RecN [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607812|gb|EEX34077.1| DNA repair protein RecN [Vibrio coralliilyticus ATCC BAA-450]
          Length = 554

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 91/303 (30%), Gaps = 48/303 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSHGMTTITGETGAGKSIAIDALGLCLGGR-----AEAGMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  + L      L    ++  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFSLENNIHATRWLEDNDLLEGGDCILRRIINKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+     +         +     +  ++
Sbjct: 117 LKTLGQLLINIHGQHAHHQLMK--SDYQMAMLDQYAGHTNLLKGTRNAYQNWRQADNNLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGV-----------KINIARVEMINALSSLIMEYV 216
               L      + +    +E Q+ EL             +    R+     L++   + +
Sbjct: 175 Q---LKENSAANLAQKQLLEYQIKELNELSLGEDEYEELEQEHKRLSNSGELAATCQQAI 231

Query: 217 QKENFPHI--------KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
           +                 S +     + D++   L    ++ +    + +S  R  L   
Sbjct: 232 ELIYEGEEVNALGILQSASSSLIQLAELDEALAELPNMLSEAIIQIEEANSELRGYLDNI 291

Query: 269 HRS 271
              
Sbjct: 292 DVD 294


>gi|170690477|ref|ZP_02881644.1| SMC domain protein [Burkholderia graminis C4D1M]
 gi|170144912|gb|EDT13073.1| SMC domain protein [Burkholderia graminis C4D1M]
          Length = 874

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 4/188 (2%)

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL-TGFLD 233
           E +      + + +Q+  +G      R+  + A          + +     LSL    L 
Sbjct: 675 EQHERQVRIAHLRSQLETVGASGLGERLAALEAKIEQATRRKDELSLRAGALSLLDEVLV 734

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            + D +   L+    ++L    K         +G   S   +D   +A T+   S G ++
Sbjct: 735 AERDAAVAQLRAPLTERLGHYLKRIFPQSTIALGDDLSPATLDRYGRADTLDALSFGTRE 794

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTD 351
            + +   LA+A L+   +G   +L+LD+ + H D  +R+A+ R + D  S  QI +    
Sbjct: 795 QLGILTRLAYADLLK-ASGRPTLLMLDDAAVHTDAARRDAIKRALIDAASRHQILVFTCH 853

Query: 352 KSVFDSLN 359
             ++D L 
Sbjct: 854 PELWDDLG 861



 Score = 41.0 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +K++ + I EF+ +              +FVG N  GK+ I EA+  +   R ++ +   
Sbjct: 1  MKLQSIAIQEFKQFTGRLFIDDLQPGLNLFVGPNEAGKSTIAEAVRAVFLER-YKASHLK 59

Query: 63 DVTRIGSPSF 72
          D+   G  S 
Sbjct: 60 DLLPWGKASG 69


>gi|163760361|ref|ZP_02167443.1| putative structural maintenance of chromosomes protein [Hoeflea
           phototrophica DFL-43]
 gi|162282312|gb|EDQ32601.1| putative structural maintenance of chromosomes protein [Hoeflea
           phototrophica DFL-43]
          Length = 1154

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++        +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFTKLRVLGFKSFVEPTEFHIERGLTGVVGPNGCGKSNLVEAMRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  +  A         I++  R +R S    +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVGLYLDNTDRTAPAAFNNSDEIQVTRRIERESGSVYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR+ L+
Sbjct: 121 EARAKDVQLLFADASTGARSPSMVGQGRIGELIQAKPQARRQLLE 165


>gi|15898540|ref|NP_343145.1| hypothetical protein SSO1739 [Sulfolobus solfataricus P2]
 gi|284174326|ref|ZP_06388295.1| hypothetical protein Ssol98_06667 [Sulfolobus solfataricus 98/2]
 gi|13814981|gb|AAK41935.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
 gi|261603066|gb|ACX92669.1| SMC domain protein [Sulfolobus solfataricus 98/2]
          Length = 315

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ ++I  FR    L +    +    +G NG GKT+ LEA+ F S    
Sbjct: 2  IENISIGNFRGLK-LNVNLG-RINAIIGRNGTGKTSFLEALFFSSLFLS 48


>gi|50550759|ref|XP_502852.1| YALI0D15246p [Yarrowia lipolytica]
 gi|49648720|emb|CAG81040.1| YALI0D15246p [Yarrowia lipolytica]
          Length = 1292

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  L+I   R++ +     + F+   T+ VG NG GKT I+E + + + G
Sbjct: 4  ISKLSIQGIRSFDNTERETITFNKPLTLIVGQNGSGKTTIIECLRYATTG 53


>gi|304440026|ref|ZP_07399919.1| ATP-dependent endonuclease [Peptoniphilus duerdenii ATCC
          BAA-1640]
 gi|304371518|gb|EFM25131.1| ATP-dependent endonuclease [Peptoniphilus duerdenii ATCC
          BAA-1640]
          Length = 561

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEA 46
          ++++ +NI  +R+  ++ ++    +  +  G N  GK+NIL A
Sbjct: 1  MRLEKINIRHYRSIENISIIMPKNKPLVLFGPNNAGKSNILSA 43


>gi|317051173|ref|YP_004112289.1| SMC domain-containing protein [Desulfurispirillum indicum S5]
 gi|316946257|gb|ADU65733.1| SMC domain protein [Desulfurispirillum indicum S5]
          Length = 396

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+ + I  F+++ +  +    +  + VG NG GK+ + +   FL     F        
Sbjct: 1   MLIESIRIKNFKSFRNAEMKKLPRFCVVVGANGSGKSTLFDVFGFLKDCLTFNVKQALQ- 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC--------LQINDVVIRVVDEL 116
            R G   F    +R        ++ IK         R         L+   VV+R   EL
Sbjct: 60  VRGG---FREVLSRGVADTESIELEIKFRMSIANVERLVTYLIEIGLENRQVVVRR--EL 114

Query: 117 NKHLRISWLVPSMDRIFSGL 136
            ++ R  +  P     F+  
Sbjct: 115 LRYKRGRYGSPYHFLHFNQG 134


>gi|239842534|gb|ACS32051.1| S024 [Salmonella enterica subsp. enterica]
          Length = 641

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61
          +K+  + IS F+++      L  +   T  +G NG GKT  L+A+    +     RR   
Sbjct: 1  MKLHSIRISNFQSFGAEPTELTLE-NITYLIGPNGSGKTAALQALCRLFAFDPSLRRIQR 59

Query: 62 AD 63
          +D
Sbjct: 60 SD 61


>gi|87121835|ref|ZP_01077721.1| hypothetical protein MED121_00885 [Marinomonas sp. MED121]
 gi|86162864|gb|EAQ64143.1| hypothetical protein MED121_00885 [Marinomonas sp. MED121]
          Length = 393

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 63/178 (35%), Gaps = 18/178 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L++S +R+   L +    +  +  G N  GK+N+ +A+  L+            + +
Sbjct: 2   INCLSVSNYRSLLKLVIPLG-KLNLITGANASGKSNLYKALRLLAETAQ--GGVVNALAK 58

Query: 67  IG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G    +F++    +      A++ I  +    + V+ L++        D  +  + +  
Sbjct: 59  EGGLESTFWAGPETLSNSMKRAEVPI--QGGPRQKVKRLRLG----FSSDNFSYSISLGL 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             PS    FS     +R  +    +     +R         +  R+  L +      W
Sbjct: 113 PKPSDSA-FSLDPEIKRECI-WGSYGDSNAYRPAAS-----LIDRDSSLVKVREGREW 163


>gi|186684606|ref|YP_001867802.1| hypothetical protein Npun_F4493 [Nostoc punctiforme PCC 73102]
 gi|186467058|gb|ACC82859.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
          Length = 661

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 12/203 (5%)

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY- 215
                  + +      + E   +     +I  ++AEL   I  ++ E+ +     I    
Sbjct: 429 EDYTKLRQALETAQNQVVEAKAN---YETIRRRLAELETVIAKSKRELSDYTVENIKHKN 485

Query: 216 --VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK-LFDGRKMDSMSRRTLIGPHRSD 272
                 +   ++ +L  F +    +    L+EE     L+   K D + R T+     S 
Sbjct: 486 SEHIITSAAKVQETLKTFREKLTLRKLNKLEEEVKNCFLYLLHKSDLVHRITIDTKTFSL 545

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           L+ D   K +     S GE++++ +    A    ++  +G    + +D     LD   R+
Sbjct: 546 LLYDLNGKPVPKHRLSAGEKQLLAI----AFLWGLAKVSGHRLPVAIDTPLGRLDSSHRS 601

Query: 333 ALFR-IVTDIGSQIFMTGTDKSV 354
            L          Q+ +  TD  +
Sbjct: 602 NLVERYFPSASHQVILLSTDTEI 624


>gi|327311172|ref|YP_004338069.1| hypothetical protein TUZN_1281 [Thermoproteus uzoniensis 768-20]
 gi|326947651|gb|AEA12757.1| hypothetical protein TUZN_1281 [Thermoproteus uzoniensis 768-20]
          Length = 328

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
           I  +R      +  +    +  G NG GK+++LEA+   + G G
Sbjct: 4  RIRGYRCLDDFVIDVEDLLVVL-GPNGSGKSSLLEALYLAASGGG 47


>gi|297709151|ref|XP_002831307.1| PREDICTED: structural maintenance of chromosomes protein 1B-like
          isoform 2 [Pongo abelii]
          Length = 1235

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYA 62
           ++ L +  F+++     +    + T  +G NG GK+N+++A+SF+   +    R  +  
Sbjct: 3  HLELLLVENFKSWRGRQVIGPFRRFTCIIGPNGSGKSNVMDALSFVMGEKIANLRVKTIQ 62

Query: 63 DVTR 66
          ++  
Sbjct: 63 ELIH 66


>gi|282164092|ref|YP_003356477.1| putative DNA double-strand break repair Rad50 ATPase [Methanocella
           paludicola SANAE]
 gi|282156406|dbj|BAI61494.1| putative DNA double-strand break repair Rad50 ATPase [Methanocella
           paludicola SANAE]
          Length = 787

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 2/97 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + IK + +   ++Y    + F    T   G NG GK+ +LE+I + +        + ++ 
Sbjct: 2   MIIKKVALKNIKSYGEDVIEFQEGITSIHGLNGAGKSTVLESIGY-ALFDSL-PYNQSEF 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101
            R G  S       V   +    I+ K  +    ++R
Sbjct: 60  VRKGEKSGEIVVTIVGMDDLEYTITRKCGSSQSYTIR 96



 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 71/199 (35%), Gaps = 23/199 (11%)

Query: 180 SSWCSSIEAQMAELGVKINIA--RVEMINA----LSSLIMEYVQKENFPHIKLSLTGFLD 233
            S C  +   +A LG +I+    R++ I+     +   + +    +     ++    F++
Sbjct: 570 KSSCEKLRTGLASLGARIDAEESRIKAIDKNLEDIEESLKQMASLKEKRTAEIDYLAFIE 629

Query: 234 GKFD------QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH- 286
              D           +  +   +   G   +            +D  +   +        
Sbjct: 630 RARDVIRMAGPEVIRVYIDLISREATGMYCEIAGDHRFEIRWTADYDIILIEDGRERTFR 689

Query: 287 -GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI---VTDIG 342
             S GEQ    + + LA  ++++++     I+ LDE + +LDE +R  L +    + D  
Sbjct: 690 QLSGGEQMSAALAVRLAVLKILTSSD----IVFLDEPTQNLDESRRERLAQEIMRIKDFK 745

Query: 343 SQIFMTGTDKSVFDSLNET 361
             I ++      F++  E 
Sbjct: 746 QMIIIS--HDDTFNASLEN 762


>gi|281424375|ref|ZP_06255288.1| DNA repair protein RecN [Prevotella oris F0302]
 gi|281401644|gb|EFB32475.1| DNA repair protein RecN [Prevotella oris F0302]
          Length = 553

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 82/245 (33%), Gaps = 36/245 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F     L + F++  ++  G+ G GK+ IL AI+ L    +  +  +     
Sbjct: 2   LKQLYIKNFTLIDELNIAFNSGFSVITGETGAGKSIILGAINLLLGQRADTKVIKADRDK 61

Query: 63  DVT-------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VV 113
            V        + G   FF   A  +      D  I+ E   +   R   +ND+ ++  ++
Sbjct: 62  CVIEAHFNLSKYGMDQFF---ADNDIDYDSEDCIIRREINKNGKSRAF-VNDMPVQLTLM 117

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRNR 171
            EL + L    +      +       +   +D +         ++     + +       
Sbjct: 118 RELGEML--VDIHSQHQNLLLQKENFQLNVVDIIAHDEQERKNYQESFKAYRKA------ 169

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                    +    +E  +A+        R +  N +    ++  ++EN       L+  
Sbjct: 170 --------HADLKQLEENIAQGKENEEFMRFQF-NEIEKANLKADEQENIEQETEQLSHS 220

Query: 232 LDGKF 236
            + K 
Sbjct: 221 EEIKE 225


>gi|302415549|ref|XP_003005606.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261355022|gb|EEY17450.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 1323

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            R+ I  L ++ F++YA    +  F A  +  VG NG GK+N+++++ F+   R    R+
Sbjct: 207 PRLVITHLVLTNFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVFGFRASKMRQ 266

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLA 86
              + +    +         V       
Sbjct: 267 GKLSALIHNSAQYPNLDHCEVSVHFKEV 294


>gi|160891919|ref|ZP_02072922.1| hypothetical protein BACUNI_04377 [Bacteroides uniformis ATCC 8492]
 gi|317480389|ref|ZP_07939489.1| DNA repair protein RecN [Bacteroides sp. 4_1_36]
 gi|156858397|gb|EDO51828.1| hypothetical protein BACUNI_04377 [Bacteroides uniformis ATCC 8492]
 gi|316903467|gb|EFV25321.1| DNA repair protein RecN [Bacteroides sp. 4_1_36]
          Length = 556

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 66/203 (32%), Gaps = 24/203 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F +  ++  G+ G GK+ IL AI  L    +  +  R  +  
Sbjct: 2   LRSLYIQNYALIEKLDISFSSGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRVGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            +   R   S      F     +E   +  ++ E       R   IND       + EL 
Sbjct: 62  CIIEARFDISAYGMQPFFEENELEYEEECILRREVSASGKSRAF-INDTPASLAQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRN---- 170
           + L           +       +   LD ++   +      +  ++ +    +       
Sbjct: 121 ELLIDV--HSQHQNLLLNKEGFQLNVLD-ILSHNE----EALSAYQHIFGAWKQAQQDLE 173

Query: 171 RLLTEGYFDSSWCSSIEAQMAEL 193
            L+     D S    I  Q+ +L
Sbjct: 174 ALVARANQDKSDEDYIRFQLEQL 196


>gi|150025613|ref|YP_001296439.1| hypothetical protein FP1562 [Flavobacterium psychrophilum
          JIP02/86]
 gi|149772154|emb|CAL43630.1| Protein of unknown function [Flavobacterium psychrophilum
          JIP02/86]
          Length = 698

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +KI  + I  FR   + +L  + + ++ +G N  GKT++L
Sbjct: 1  MKINKIKIENFRLLKNFQLDLENELSLVIGKNNCGKTSLL 40


>gi|145231946|ref|XP_001399441.1| structural maintenance of chromosomes protein 2 [Aspergillus niger
           CBS 513.88]
 gi|134056350|emb|CAK47585.1| unnamed protein product [Aspergillus niger]
          Length = 1179

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRITEIIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDTAKSPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|41207549|gb|AAR99643.1| RecN [Lactococcus lactis subsp. cremoris MG1363]
          Length = 135

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 20/129 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I  F     + L F++  TI  G+ G GK+ I++A+S L  GR     + +D  R
Sbjct: 2   LQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGR-----ASSDFVR 56

Query: 67  IGSPSFFST------------FARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIR-- 111
            G+                   A +E      D  I L      + R + +IN  ++   
Sbjct: 57  HGASKAEIEGLFFFEKTPELNSALLELGFEELDSEIILRREIFANGRSVCRINGQMVNLT 116

Query: 112 VVDELNKHL 120
            + ++ + L
Sbjct: 117 RLRQIGEFL 125


>gi|333028069|ref|ZP_08456133.1| putative DNA repair protein RecN [Streptomyces sp. Tu6071]
 gi|332747921|gb|EGJ78362.1| putative DNA repair protein RecN [Streptomyces sp. Tu6071]
          Length = 589

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 10/70 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     + A +
Sbjct: 9  MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADAAL 58

Query: 65 TRIGSPSFFS 74
           RIG+ S   
Sbjct: 59 VRIGAKSAVV 68


>gi|318062635|ref|ZP_07981356.1| DNA recombination and repair protein [Streptomyces sp. SA3_actG]
 gi|318081133|ref|ZP_07988465.1| DNA recombination and repair protein [Streptomyces sp. SA3_actF]
          Length = 589

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 10/70 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     + A +
Sbjct: 9  MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADAAL 58

Query: 65 TRIGSPSFFS 74
           RIG+ S   
Sbjct: 59 VRIGAKSAVV 68


>gi|300703270|ref|YP_003744872.1| hypothetical protein RCFBP_10938 [Ralstonia solanacearum CFBP2957]
 gi|299070933|emb|CBJ42239.1| conserved protein of unknown function [Ralstonia solanacearum
           CFBP2957]
          Length = 870

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 65/203 (32%), Gaps = 22/203 (10%)

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY-VQKENFP 222
           +L+  R  L           + +EA        I+    E    L   I     +  +  
Sbjct: 521 KLVAERAELDARYKLREVKDAVLEA--------ISKY--EYCAKLQKCIDGTDTRGISRK 570

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
              LS T       D     LK+    +L    K +S   RT        L +     A 
Sbjct: 571 STDLSRTLASKELADALNDELKKLKCHELQVVMKPESPGGRTQF-----KLTLQLPGNAT 625

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TD 340
             +  S GEQ+ + +  FLA         G    ++ D+  + LD  +R  +   +    
Sbjct: 626 PASILSEGEQRAIAIASFLAEI----KLGGGLGGIVFDDPVSSLDHRRRWEVAERLVEES 681

Query: 341 IGSQIFMTGTDKSVFDSLNETAK 363
           +  Q+ +   D      L + A+
Sbjct: 682 LKRQVIVFTHDIYFLCILEQKAE 704


>gi|256821293|ref|YP_003145256.1| hypothetical protein Kkor_0066 [Kangiella koreensis DSM 16069]
 gi|256794832|gb|ACV25488.1| conserved hypothetical protein [Kangiella koreensis DSM 16069]
          Length = 661

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
          ++I+ ++IS FR ++     +  ++  T FVG+NG GK+ ++ A+       R  R    
Sbjct: 1  MEIEKISISNFRCFSEAEAVIFMESDITCFVGNNGTGKSALILALKRIFGSTREERT--- 57

Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKL 92
            V R     F+             ++ I++
Sbjct: 58 --VIR---EDFYVGSGEDYKEISGRELYIEI 83


>gi|218676547|ref|YP_002395366.1| predicted ATP-dependent endonuclease [Vibrio splendidus LGP32]
 gi|218324815|emb|CAV26524.1| predicted ATP-dependent endonuclease [Vibrio splendidus LGP32]
          Length = 590

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + IS FR    + L FD   T  +G+N  GK+++L+A+S + P       S    
Sbjct: 1   MQLERIEISGFRGIKRMSLAFDE-LTTLIGENTWGKSSLLDALSVVLP-------SDGVP 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDELN 117
                  F   ++          I + L+  D   +   +      + V DE  
Sbjct: 53  YHFEMTDFHVDYSVSHPQSQHLQIVLALKANDKSELNAGRYRKLKPVWVQDEFG 106


>gi|153953860|ref|YP_001394625.1| hypothetical protein CKL_1235 [Clostridium kluyveri DSM 555]
 gi|219854475|ref|YP_002471597.1| hypothetical protein CKR_1132 [Clostridium kluyveri NBRC 12016]
 gi|146346741|gb|EDK33277.1| RecN [Clostridium kluyveri DSM 555]
 gi|219568199|dbj|BAH06183.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 565

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 18/130 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI+ F     L + F++   I  G+ G GK+ +++AI+++  G  F      D+ R
Sbjct: 2   LLQLNINNFALIEKLIISFESGFNILSGETGAGKSILIDAINYV-MGSKF----NKDLIR 56

Query: 67  IG-SPSFFSTFARVEG-----------MEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
            G + +F      +E            + G  ++ I             ++N   + ++ 
Sbjct: 57  TGKNKTFVEAVFTIENPKTFEILNEEDISGEENMVIISRESFQSGRTIAKVNGKSV-LIS 115

Query: 115 ELNKHLRISW 124
            L K      
Sbjct: 116 NLRKISSTLL 125


>gi|74830387|emb|CAI39060.1| Structural maintenance of chromosomes 3 [Paramecium tetraurelia]
          Length = 1287

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 2  TNRIKIKFLNISEFRNY-ASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
           +++ I  + +  F++Y   L +  F  Q T  VG NG GK+N++E++ F+   +    R
Sbjct: 8  PSQLIINRIILDNFKSYYGHLEIGPFHHQFTSIVGPNGSGKSNLIESLLFVFGKKASWMR 67

Query: 58 RASYADVTRIGSPSFFSTFARVE 80
                +    +       A VE
Sbjct: 68 LQKIHQLIHNSAEHRDVKKASVE 90


>gi|86148316|ref|ZP_01066610.1| predicted ATP-dependent endonuclease [Vibrio sp. MED222]
 gi|85833871|gb|EAQ52035.1| predicted ATP-dependent endonuclease [Vibrio sp. MED222]
          Length = 590

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + IS FR    + L FD   T  +G+N  GK+++L+A+S + P       S    
Sbjct: 1   MQLERIEISGFRGIKRMSLAFDE-LTTLIGENTWGKSSLLDALSVVLP-------SDGVP 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDELN 117
                  F   ++          I + L+  D   +   +      + V DE  
Sbjct: 53  YHFEMTDFHVDYSVSHPQSQHLQIVLALKANDKSELNAGRYRKLKPVWVQDEFG 106


>gi|332827898|gb|EGK00620.1| hypothetical protein HMPREF9455_02894 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 414

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/383 (12%), Positives = 122/383 (31%), Gaps = 68/383 (17%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--------RRA 59
           + L I  F  +  +   F     IF+G    GK+ +++   +    + +        R  
Sbjct: 4   EKLIIKNFAGFEHIEFDFKP-INIFIGPQAAGKSVVVKLAYYF---KSYLNDLYKFDRIH 59

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLE-----TRDDRSVRCLQINDVVIRVVD 114
             +++    +  F+S F           I   L+         R  +   I     + + 
Sbjct: 60  MPSELIDRYNDLFYSYFPVESWSNKNFTIKYILDKSFIIISSSRKAKDWYIEVKFSKDIR 119

Query: 115 ELNKHLRISW---LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
           E+ + L       L P M   FS     R                +  + ++ +++ +  
Sbjct: 120 EIIESLTEILENNLDPQMIN-FSTARNLRE--------------LKEKVKYKSVLQSKQY 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            +  G                    I      ++ + ++ I  ++ +    + +  +   
Sbjct: 165 FIPAGRS--------------FFSNIQSNIFALLQS-NNTIDPFIIEFGANYEQAKVVFN 209

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
                 ++   L +  ++ L      D+          +    +   +        S+G+
Sbjct: 210 KSSDIFRTHNKLSKLCSEILKGIYIRDNQIDYL---VQKDKRKISLLN-------ASSGQ 259

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-----GSQIF 346
           Q+   + +F+      SN     P+L ++E   HL    +  + ++++ +       Q+F
Sbjct: 260 QETFPLLMFIQTLFFPSNKEPKDPVLYIEEPETHLYPVAQKQIVQVLSRLFNILINKQLF 319

Query: 347 MTGTDK---SVFDSLNETAKFMR 366
           +T       + F++L E    ++
Sbjct: 320 ITTHSPYILAAFNNLLEAGNIIK 342


>gi|322806602|emb|CBZ04171.1| hypothetical protein H04402_02363 [Clostridium botulinum H04402
           065]
          Length = 576

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           KIK LNI  F     L L    +  +  G  G GK++I+E+I      +  R     +V 
Sbjct: 3   KIKKLNIKNFLGLEELGLDCS-KINLIKGPKGSGKSSIIESIEKGFTNKNRRT----EVV 57

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           + G           +G+    D  ++ E  D   VR 
Sbjct: 58  KHGEEEATIYIELDDGL--SIDRRLRTEKADYLKVRK 92


>gi|255326176|ref|ZP_05367262.1| DNA repair protein RecN [Rothia mucilaginosa ATCC 25296]
 gi|255296630|gb|EET75961.1| DNA repair protein RecN [Rothia mucilaginosa ATCC 25296]
          Length = 572

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 52/384 (13%), Positives = 115/384 (29%), Gaps = 58/384 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I I+ L I         RL  +   ++  G+ G GKT ++ A+  L   R      
Sbjct: 1   MIEEIHIRDLGI-----ITDARLPLEPGFSVLTGETGAGKTMVVTALGMLLGARS----- 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD---------------------DRS 99
            A   R G+ S  +  A +    G   + +  E                         RS
Sbjct: 51  DASSVRNGAKSALAE-AVIRLPHGHRALELAEEAGGTAEDIDEQTSELLLARTVNASGRS 109

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRH 155
              +      I  + ++ + L         D++    + E+R+ LD      +  +  ++
Sbjct: 110 RAHVGGCSAPIGTLSQIGQTLVAV--HGQSDQLRLKSAAEQRQSLDLYAGEELSNLLEKY 167

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV------KINIARVEMINALS 209
           R     +         +       +    +++  + E+        +    + EM+  ++
Sbjct: 168 RENYERYRAAAAELKEVRENSRARALEAQTLQGALEEISAVNPQEGEEEELKAEMVKLMN 227

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
              +E ++  +                +QS  +L +     L      D          +
Sbjct: 228 ---VEALRIASATASAALSGSEYSTGDEQSVMSLLDASRSALQAQADADEELASLAARVN 284

Query: 270 RSDLIVDYCDKAITIAHGS---TGEQKVVLVGIFLAHARLISNTTGFAPILLL---DEIS 323
              ++       ++    S    G +++  V    A    ++   G     +L   +E  
Sbjct: 285 ELLILATDISSDLSSYMASLDVEGPERLAQVQTRRAQLATLTRKYGADIAEVLEWAEESR 344

Query: 324 AHL-----DEDKRNALFRIVTDIG 342
           A L     D  ++  L   +  + 
Sbjct: 345 ARLETLVDDPQRQETLETELVQLR 368


>gi|190575036|ref|YP_001972881.1| putative chromosome partition protein [Stenotrophomonas maltophilia
           K279a]
 gi|190012958|emb|CAQ46590.1| putative chromosome partition protein [Stenotrophomonas maltophilia
           K279a]
          Length = 1181

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 16/128 (12%)

Query: 3   NRIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRR 58
           + +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R 
Sbjct: 13  HAMRLSTIKLSGFKSFVDPTTLHLPTNMTGVVGPNGCGKSNIIDAVRWVMGESSASRLRG 72

Query: 59  ASYADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-----------IN 106
            S  DV   GS +    + A VE +   +D +I  E      +   +           +N
Sbjct: 73  DSLTDVIFSGSNARKPVSQATVELIFDNSDHTISGEYASFNEISVKRTVSRDGTSNYYLN 132

Query: 107 DVVIRVVD 114
               R  D
Sbjct: 133 GTKCRRRD 140


>gi|86152093|ref|ZP_01070305.1| predicted ATP-dependent endonuclease of the OLD family
          [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85840878|gb|EAQ58128.1| predicted ATP-dependent endonuclease of the OLD family
          [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 168

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI  + I  FR+Y +  +V     T FVG N +GK+ ILEA+
Sbjct: 1  MKIIQVKIKNFRSYVNEVIVDFEDLTAFVGKNDIGKSTILEAL 43


>gi|322830494|gb|EFZ33497.1| structural maintenance of chromosome protein 4, putative
           [Trypanosoma cruzi]
          Length = 1404

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 3   NRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
            R+ I+ + +  F++Y        F    T  +G NG GK+N+++A+ F+     +  R 
Sbjct: 61  TRMVIRDIEVENFKSYAGKHCIGPFHKTFTAVIGPNGSGKSNVIDAMLFVFGRNAKKIRL 120

Query: 59  ASYADVTRIGSPSFFSTFARV 79
              +++    +      +A V
Sbjct: 121 ERLSELIHSSAAHPNQAYASV 141


>gi|295100362|emb|CBK97907.1| condensin subunit Smc [Faecalibacterium prausnitzii L2-6]
          Length = 1185

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 22/176 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           +  K L I  F+++   +++ FD   T  VG NG GK+N+ +A+ ++      R+   A 
Sbjct: 1   MVFKELEIQGFKSFPDKVKIRFDEGVTGVVGPNGSGKSNLSDAVRWVLGETSSRQLRAAG 60

Query: 63  ---DVT-----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC----LQINDVVI 110
              DV      R G+  F      ++      DI         +  R       IN  + 
Sbjct: 61  KMEDVIFGGTRRRGAMGFAMVRLTLDNSAHTLDIDADEAVIGRKYYRSGESEYTINGQLC 120

Query: 111 RVVDELNKHLRI--------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR 158
           R+ D     L                +  I +  S ERR   +        R+R+ 
Sbjct: 121 RLKDIYELLLDTGIGRDGYSVIGQGRIAEIVAAKSSERREIFEEACGIAKYRYRKN 176


>gi|294340193|emb|CAZ88565.1| putative Structural maintenance of chromosome protein SMC
          [Thiomonas sp. 3As]
          Length = 1177

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L ++ F+++A  + L F  + +  VG NG GK+N+++A+ ++   S     R  S
Sbjct: 1  MRLTSLRLAGFKSFAEPVTLPFPGRISGIVGPNGCGKSNVIDAVRWVLGESKASELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|259046630|ref|ZP_05737031.1| DNA repair protein RecN [Granulicatella adiacens ATCC 49175]
 gi|259036795|gb|EEW38050.1| DNA repair protein RecN [Granulicatella adiacens ATCC 49175]
          Length = 573

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 71/203 (34%), Gaps = 21/203 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + I  F     ++  F+   T+  G+ G GK+ I++A+  L    G R +   ++ R
Sbjct: 5   IQEIYIKNFAIIEEVQCTFEKGMTVLTGETGAGKSIIIDAVGLLI---GERASL--EMIR 59

Query: 67  IGSP-SFFSTFARVEG---MEGLADISIKLE----------TRDDRSVRCLQINDVVIRV 112
            G   S      R+E    +E L +  +++            ++ +S   +      + +
Sbjct: 60  YGEEKSLIQGVFRIEDPAVVEKLQEFGVEVVEDELMIQRELLQNGKSNCRINGQLATVAL 119

Query: 113 VDELNKHLRISWLVPSMDRIFSGLS--MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           + ++  +L           + +          F    + ++   +           +   
Sbjct: 120 LKQIGPYLIDIHGQNEHFLLLNEEKHLGLLDEFAHHQMGSLMAEYDEAYAKVVAAKQELR 179

Query: 171 RLLTEGYFDSSWCSSIEAQMAEL 193
            L T    D+     ++ Q+ E+
Sbjct: 180 ALQTAEKEDAQRVDMLKFQLQEI 202


>gi|261820281|ref|YP_003258387.1| recombination and repair protein [Pectobacterium wasabiae WPP163]
 gi|261604294|gb|ACX86780.1| DNA repair protein RecN [Pectobacterium wasabiae WPP163]
          Length = 553

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 80/245 (32%), Gaps = 32/245 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  ++  G+ G GK+  ++A+      R       A + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMSVITGETGAGKSIAIDALGLCLGNRS-----DASMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            ++   +  ++     D   R   IN   V + 
Sbjct: 57  PGTARADICARFALADTPTARQWLEENQLDDSNECLLRRVISADGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRIS--------WLVPSMDRIFSGLSMERRRFLD--RMVFAIDPRHRRRMID 161
            + EL +HL            L P   +       +  + L   + V+    +  R +  
Sbjct: 116 QLRELGQHLIQVHGQHAHQLLLRPDHQKHLLDAYADEPKLLAAMQQVWHQWHQSCRALAQ 175

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKEN 220
            ++    R        +     +    Q AE   + +   R+     L ++  + +Q  +
Sbjct: 176 LQQAAIEREARRELLQYQLKELNEFAPQPAEYEQIDVEYKRLANSGQLLTMSQQAMQLLS 235

Query: 221 FPHIK 225
               +
Sbjct: 236 EDEEQ 240


>gi|13476253|ref|NP_107823.1| chromosome segregation SMC protein [Mesorhizobium loti MAFF303099]
 gi|14027014|dbj|BAB53968.1| chromosome segregation SMC protein [Mesorhizobium loti MAFF303099]
          Length = 1152

 Score = 47.6 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K   L +  F+++      V +   T  VG NG GK+N++EA+ ++   S  +  R + 
Sbjct: 1   MKFSRLRLLGFKSFVEPGEFVIERGLTGIVGPNGCGKSNLVEALRWVMGESSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSGTRPARNTAEVTLFLDNSDRSAPAAFNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|326385841|ref|ZP_08207469.1| ATP-dependent OLD family endonuclease [Novosphingobium
          nitrogenifigens DSM 19370]
 gi|326209678|gb|EGD60467.1| ATP-dependent OLD family endonuclease [Novosphingobium
          nitrogenifigens DSM 19370]
          Length = 255

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 5  IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +K+K  +I  +R+         +A  TI VG N  GKT +L+A+  ++P +G
Sbjct: 1  MKLKTAHIQNYRSIRDTGVFEIEAGKTILVGPNEAGKTAVLQALQQINPPKG 52


>gi|306831338|ref|ZP_07464498.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
          gallolyticus TX20005]
 gi|304426574|gb|EFM29686.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
          gallolyticus TX20005]
          Length = 656

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + + I  + I  +RN+  L +    + ++ VG+N VGKTN ++A+  +
Sbjct: 2  DSLYISRVVIKNYRNFKDLDVNLQHK-SVIVGENNVGKTNFIKALQLI 48


>gi|302839240|ref|XP_002951177.1| structural maintenance of chromosomes protein 4 [Volvox carteri f.
           nagariensis]
 gi|300263506|gb|EFJ47706.1| structural maintenance of chromosomes protein 4 [Volvox carteri f.
           nagariensis]
          Length = 1239

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 4   RIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRA 59
           R+ I+ + +  F++Y        F    +  VG NG GK+N+++A+ F+     +  R  
Sbjct: 15  RLMIREMILENFKSYAGEQKVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGRRAKQLRFN 74

Query: 60  SYADVTRIGSPSFFSTFARV-----EGMEGLADISIKLETRDDRSVRCLQINDV 108
             +++            ARV     E ++   D    +   +    R  Q N+ 
Sbjct: 75  KVSELIHNSQNHRNLELARVTVRFQEILDQEGDQYTVIPGSEFNVARTAQRNNE 128


>gi|304373610|ref|YP_003858355.1| gp46 recombination endonuclease subunit [Enterobacteria phage RB16]
 gi|299829566|gb|ADJ55359.1| gp46 recombination endonuclease subunit [Enterobacteria phage RB16]
          Length = 565

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 92/271 (33%), Gaps = 47/271 (17%)

Query: 5   IKIKFLNISEFRNYASL-----RLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           +K+ F  I  ++N  S+      L FD A+ T+  G NG GK+ ++EA+++   G+ FR 
Sbjct: 1   MKLNFRKIK-YQNILSVGNTPIELEFDTAKKTLITGKNGGGKSTLIEALTYALFGKSFRD 59

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
                +      S       VE        S K+       V  +  N   +        
Sbjct: 60  LKVGQLVN----SVNKKKCLVELDIEYGKDSYKVVRGQKPKVFEIWKNGDKLAEDSAAGD 115

Query: 119 H------LRISWLVPSMDRIFSGLSM----------ERRRFLDRMVFAIDPRHRRRMIDF 162
           +      +    LV     I  G +           +RR+ ++ ++          + + 
Sbjct: 116 YQSQLESMLNINLVGFKQVIVLGTAGYTPFMELKTPDRRKLVEDLLS------LSVISEM 169

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           ++L             + S+   +  Q+  L +++N    + I      I E   K N  
Sbjct: 170 DKL-------------NKSYVRGVNQQLDTLSMQVNHI-QQQIATHQRFIDEQRAKANQN 215

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
           + +         +  ++  A   +   ++ +
Sbjct: 216 NARYKEIYDSHVETAKNIKAQLMQLQAEIAE 246


>gi|91224288|ref|ZP_01259550.1| Predicted ATPase, possibly involved in inorganic ion transport
           [Vibrio alginolyticus 12G01]
 gi|91190630|gb|EAS76897.1| Predicted ATPase, possibly involved in inorganic ion transport
           [Vibrio alginolyticus 12G01]
          Length = 866

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 8/127 (6%)

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI--VDYCDKAITIAHGSTGEQKVVL 296
           +  +LK+ + ++L   R           G     L+       K       S GEQK V 
Sbjct: 573 AIGSLKKVFNEELRKLRFKSFNVGTETRGSQGKQLLKLSLTGKKNDIADVASEGEQKCVA 632

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD--IGSQIFMTGTDKSV 354
           +  FLA              ++ D+    LD   R    + + +  +  Q+ +   D S 
Sbjct: 633 LAGFLAEL----TVDDRKSAIIFDDPINSLDHKWRRMFAKRIAEEALHRQVIVFTHDMSF 688

Query: 355 FDSLNET 361
              L E 
Sbjct: 689 LIMLKEA 695


>gi|254228627|ref|ZP_04922051.1| DNA repair protein RecN [Vibrio sp. Ex25]
 gi|262395065|ref|YP_003286919.1| DNA repair protein RecN [Vibrio sp. Ex25]
 gi|151938806|gb|EDN57640.1| DNA repair protein RecN [Vibrio sp. Ex25]
 gi|262338659|gb|ACY52454.1| DNA repair protein RecN [Vibrio sp. Ex25]
          Length = 554

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 63/207 (30%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEAGMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  + L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFLLDNNLHATRWLEDNDLLDGSECILRRIITKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+    ++         +     +  ++
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMK--SEHQMAMLDQYAGHLNLLKSTRSAYQHWRQADNNLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
                  +             ++ EL 
Sbjct: 175 QLKENSQQNQAQKQLLEYQIKELNELS 201


>gi|330470058|ref|YP_004407801.1| ABC transporter-like protein [Verrucosispora maris AB-18-032]
 gi|328813029|gb|AEB47201.1| ABC transporter-like protein [Verrucosispora maris AB-18-032]
          Length = 551

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 85/301 (28%), Gaps = 51/301 (16%)

Query: 71  SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130
                   V   +       + E    +  R  +   VV  +             VP   
Sbjct: 278 EHQRLAEAVNEAQQRLSTGWRPEKGHGKHQRQSRAPGVVQALRRRQEDLAAHQLTVPE-- 335

Query: 131 RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR--------NRLLT---EGYFD 179
                    R R+ +       P  R   +     +R          +RLL     G   
Sbjct: 336 ------PPLRLRWPELGTRTRSPILRCTAVTVTGRLRHAVTLTIDGEDRLLVTGPNGAGK 389

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
           S+  + +  Q+     ++       +  L   + ++        +     G L     QS
Sbjct: 390 STLLAVLARQLEPSTGEVRHLPQARVALLGQEVPDWPSDVLAHELYDRYVGRL-----QS 444

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
              L +     L     +D  + RT +G                    S G+Q+ + + +
Sbjct: 445 AGRLGDRDRLPLTATNLLDREALRTPVG------------------RMSQGQQRRLNLAL 486

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            LA             +L+LDE + HL     + L   + +  + + +   D+ +   L 
Sbjct: 487 RLAE---------RPDLLILDEPTNHLSAPLVDELTAALRETSAAVVVATHDRQMLVDLA 537

Query: 360 E 360
           +
Sbjct: 538 D 538


>gi|302327508|gb|ADL26709.1| nuclease, ATP-dependent, OLD family [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 592

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/376 (15%), Positives = 112/376 (29%), Gaps = 78/376 (20%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
              +++  + IS  R+            T  +G N  GKTNIL  I +L           
Sbjct: 3   PQALRLSRITISNLRSIQRETFPLSD-FTALIGYNNAGKTNILMGIRWLLANFSL----- 56

Query: 62  ADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDD----RSVRCLQINDVVIRVVDEL 116
            D++    P+         EG+       +  E   +     S   L++   V R+  EL
Sbjct: 57  -DISYFDDPNHPVEAEGLFEGITEQVLNRLGEEKAAEVEPFLSGTTLRV-KKVQRIPGEL 114

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRM---------VFAIDPRHRRRM-----IDF 162
             ++      P            +R+  D +            + P             +
Sbjct: 115 PGNIEFWAFCP---------PNGKRKGKDWVRVNDKFTAAFNRMFPESIAIWDFEGNQAY 165

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
            +LM    + L   +      S +  Q  EL    +  + E I A    +   ++   FP
Sbjct: 166 TKLMHEIFKPLERKFGGE--LSQVIEQFTELLSPGSDCQAEEIKAFDKEVNSALRPL-FP 222

Query: 223 HIKLSLT---GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
            +++ L      L+     +   + +E      DG + D                     
Sbjct: 223 SVRVELNIPVPTLETFLKSATIKVVDE-----DDGFERDISRMGA--------------- 262

Query: 280 KAITIAHGSTGEQKVVLVGIF--LAHA-RLISNTTGFAPILLLDEISAHLDEDKRNAL-- 334
                     G Q+ + + +   LA   +  +N      +LL+D     L       +  
Sbjct: 263 ----------GSQRAIQMALIRYLAEIKKHHNNHYLSRKLLLIDSPELFLHPQAVELVRV 312

Query: 335 -FRIVTDIGSQIFMTG 349
             + +++ G Q+    
Sbjct: 313 ALKNLSNEGYQVIFAT 328


>gi|284036391|ref|YP_003386321.1| ATPase [Spirosoma linguale DSM 74]
 gi|283815684|gb|ADB37522.1| ATPase-like protein [Spirosoma linguale DSM 74]
          Length = 426

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           + ++ I  F++   LRL    +  +F+G   VGK+NILEA+  L  G
Sbjct: 65  LNWVEIKNFKSIKDLRLDC-KRVNVFIGKPNVGKSNILEALGLLGAG 110


>gi|255263544|ref|ZP_05342886.1| chromosome segregation protein SMC [Thalassiobium sp. R2A62]
 gi|255105879|gb|EET48553.1| chromosome segregation protein SMC [Thalassiobium sp. R2A62]
          Length = 1151

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 78/232 (33%), Gaps = 31/232 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFSKLRLNGFKSFVDPTDLIIADGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             DV   G+      +F      ++  E LA  +       +   R  +      +   +
Sbjct: 61  MEDVIFAGAATRPARNFAEVSLIIDNGERLAPAAFNDSDNLEIIRRITRDVGSAYKANTK 120

Query: 116 LNKHLRISWL---------VPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
             +   +  L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DIRARDVQMLFADASTGAHSPALVRQGQISELINSKPKARRRILE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSS 210
             E  ++ R         D      + +Q++ L    +      E+  AL  
Sbjct: 177 RHEAELKLRGAETNLARVDDV-IEQLASQLSSLARQARQAARYREIGEALRK 227


>gi|172034841|ref|YP_001798618.1| putative ATPase [Cyanothece sp. ATCC 51142]
 gi|171701605|gb|ACB54584.1| putative ATPase [Cyanothece sp. ATCC 51142]
          Length = 574

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +  + I  F+N  +L L  D +  I VG N  GK++IL+AI F
Sbjct: 2  LGKITIQRFKNLENLTLDLD-RVNILVGSNNSGKSSILQAIQF 43



 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 313 FAPILLLDEISAHLDEDKRNALFRIV----TDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
              ILLLDE  +HL  + +  L +++     +   QI +T   + + D+L E  K   + 
Sbjct: 255 KPQILLLDEPDSHLHPNNQRKLAKMLIKLTEERDLQIIVTTHSRHLLDALREKTKIYWLK 314

Query: 369 NHQAL 373
           N   +
Sbjct: 315 NGTII 319


>gi|171742795|ref|ZP_02918602.1| hypothetical protein BIFDEN_01909 [Bifidobacterium dentium ATCC
           27678]
 gi|283456155|ref|YP_003360719.1| DNA repair protein recN [Bifidobacterium dentium Bd1]
 gi|171278409|gb|EDT46070.1| hypothetical protein BIFDEN_01909 [Bifidobacterium dentium ATCC
           27678]
 gi|283102789|gb|ADB09895.1| DNA repair protein recN [Bifidobacterium dentium Bd1]
          Length = 576

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 56/303 (18%), Positives = 89/303 (29%), Gaps = 42/303 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +     S  +      T   G+ G GK+ +L AI  +S G             
Sbjct: 2   LEELEIRDLGPIRSALIAPAGGMTAITGETGAGKSMLLSAIRLISGGPS-----DGGRVS 56

Query: 67  IGSPSFFSTFARVEGMEGLA------------DISIKLETRDDRSVRC---LQINDVVIR 111
           +G+   ++      G    A            D  + L  +   S R    L    V   
Sbjct: 57  VGAEEAWAQGVFEVGASVAAVAAAREAGFEPEDGELFLSRKVPASGRSRSMLSGRSVPRS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGR 169
           V+D +   L    +    D++       +R FLDR     +    + R      R M  R
Sbjct: 117 VLDSVASEL--VTIHGQADQLRIASPARQREFLDRYAGNDEAMAAYGRAWEAL-RAMDER 173

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKI---------NIARVEMINALSSLIMEYVQKEN 220
              L+         +    +  E   +I           AR + I        E  Q   
Sbjct: 174 LERLSSQESSMRQQADYLRESIERINRIDPQPGESEELHARRDRIE----NAAEIAQGAA 229

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF----DGRKMDSMSRRTLIGPHRSDLIVD 276
                L  +   D     S   L +  A+ L     +G   D   R   IG   SD++  
Sbjct: 230 TALAALDASQVGDDVDAASAAELIDRAAQALRSIHVEGVFSDLADRLDSIGADLSDVVFT 289

Query: 277 YCD 279
              
Sbjct: 290 LSG 292


>gi|167841738|ref|ZP_02468422.1| hypothetical protein Bpse38_34002 [Burkholderia thailandensis
          MSMB43]
          Length = 588

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
          +KI  + ++      +  +       +F G NG GK+++ EA+     G   R A   + 
Sbjct: 1  MKITDIYVANVLGIRTADIRLAKPVALFTGPNGAGKSSLQEAVRMALTGDTVRVALKKEY 60

Query: 64 --VTRIGSPSFFSTFA 77
            +   G+       A
Sbjct: 61 GSLVTEGADGGQIVVA 76


>gi|58580159|ref|YP_199175.1| hypothetical protein XOO0536 [Xanthomonas oryzae pv. oryzae
          KACC10331]
 gi|84622159|ref|YP_449531.1| hypothetical protein XOO_0502 [Xanthomonas oryzae pv. oryzae MAFF
          311018]
 gi|58424753|gb|AAW73790.1| unknown protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84366099|dbj|BAE67257.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
          MAFF 311018]
          Length = 397

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI+ + +  F+ +  + L       + VG NG GK+ + +   FL
Sbjct: 1  MKIESIRLRNFKAFRDVHLKDMPSFLVVVGANGSGKSTLFDVFGFL 46


>gi|319784674|ref|YP_004144150.1| chromosome segregation protein SMC [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170562|gb|ADV14100.1| chromosome segregation protein SMC [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 1153

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K   L +  F+++      V +   T  VG NG GK+N++EA+ ++   S  +  R + 
Sbjct: 1   MKFSRLRLLGFKSFVEPGEFVIERGLTGIVGPNGCGKSNLVEALRWVMGESSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSGTRPARNTAEVTLFLDNSDRSAPAAFNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|311899105|dbj|BAJ31513.1| putative DNA repair protein RecN [Kitasatospora setae KM-6054]
          Length = 581

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 27/190 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +
Sbjct: 1   MLDEMRIRDLGVID-----DAVVELAPGFTAVTGETGAGKTMVVTSLGLLLGGR-----A 50

Query: 61  YADVTRIGSPSFFS-----------TFAR-VEGMEGLADISIKLET---RDDRSVRCLQI 105
              + R GS                  AR +E    L D  + +      + RS   +  
Sbjct: 51  DPALVRNGSERAVVEGRLTLDPGSPVVARALEAGAELDDGELLVSRTVSAEGRSRAHVGG 110

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
             V + ++ EL + L          R+       +R  LDR           R  +  R 
Sbjct: 111 RSVPVGLLAELGEDLIAVHGQTDQQRLLR--PSRQRGALDRYAGEAVAEPLARYREVYRE 168

Query: 166 MRGRNRLLTE 175
           +R  +  L E
Sbjct: 169 LREVSATLEE 178


>gi|296135972|ref|YP_003643214.1| chromosome segregation protein SMC [Thiomonas intermedia K12]
 gi|295796094|gb|ADG30884.1| chromosome segregation protein SMC [Thiomonas intermedia K12]
          Length = 1177

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L ++ F+++A  + L F  + +  VG NG GK+N+++A+ ++   S     R  S
Sbjct: 1  MRLTSLRLAGFKSFAEPVTLPFPGRISGIVGPNGCGKSNVIDAVRWVLGESKASELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|254586671|ref|XP_002498903.1| ZYRO0G21296p [Zygosaccharomyces rouxii]
 gi|238941797|emb|CAR29970.1| ZYRO0G21296p [Zygosaccharomyces rouxii]
          Length = 1227

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 5/123 (4%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60
           + I+ + I  F+ Y +  +   F   H I +G NG GK+N   AI F+        +R  
Sbjct: 1   MYIRRVVIKGFKTYRNETIIDNFSPHHNIVIGSNGSGKSNFFAAIRFVLSNDYANLKREE 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
              +   GS S  S    +   +    I +       R    + +   V    D+   + 
Sbjct: 61  RQGLIHQGSGSVMSASVEIVFHDPSHRIILPSGI-PPRENDEVFVRRTVGLKKDDYQLND 119

Query: 121 RIS 123
           R  
Sbjct: 120 RNV 122



 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 106/297 (35%), Gaps = 25/297 (8%)

Query: 84   GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV-----PSMDRIFSGLSM 138
              A +  KLET    + + +     +    +EL + +R   L+      S + + SG  +
Sbjct: 915  QQASLLKKLETFQKDAEKSMVKKTTLAARREELQQKIREVGLLAEEALNSFNNLSSGELL 974

Query: 139  ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198
            +R   ++  +  +   ++R   +F++    R  L           SSI+  +  L  +  
Sbjct: 975  QRLNSVNEDISGLSNVNKRAFENFKKFGEKRTELEERAEELDESKSSIQNLITRLKRQKV 1034

Query: 199  IARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKE-EYAKKLFDGRK 256
             A     N +S    +  +K       KL +    D + D +           +  + R 
Sbjct: 1035 NAVDSTFNKVSENFSKVFEKLVPRGTAKLIIHRNTDIQEDPNDDEDVNMSDGDENDESRS 1094

Query: 257  MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST--GEQKVV-LVGIFLAHARLISNTTGF 313
                +  + +        V +  K     H     G QK V  V + LA  +++      
Sbjct: 1095 KSVEAMYSGVSIS-----VSFNSKKNEQQHVEQLSGGQKTVCAVALILA-IQMVE----P 1144

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRIS 368
            AP  L DEI A LD+  R A+   + ++   +Q   T       D L    KF R+ 
Sbjct: 1145 APFYLFDEIDAALDKQYRTAVASTIKELSENAQFICTT---FRSDMLEVADKFYRVK 1198


>gi|15677905|ref|NP_275073.1| hypothetical protein NMB2085 [Neisseria meningitidis MC58]
 gi|218767347|ref|YP_002341859.1| putative ATP-binding protein [Neisseria meningitidis Z2491]
 gi|304388716|ref|ZP_07370774.1| probable ATP-binding protein [Neisseria meningitidis ATCC 13091]
 gi|7227347|gb|AAF42402.1| hypothetical protein NMB2085 [Neisseria meningitidis MC58]
 gi|121051355|emb|CAM07646.1| putative ATP-binding protein [Neisseria meningitidis Z2491]
 gi|304337280|gb|EFM03456.1| probable ATP-binding protein [Neisseria meningitidis ATCC 13091]
 gi|308390184|gb|ADO32504.1| hypothetical protein NMBB_2397 [Neisseria meningitidis alpha710]
 gi|316983975|gb|EFV62954.1| ATP-binding protein [Neisseria meningitidis H44/76]
 gi|319409607|emb|CBY89906.1| putative ATP-binding protein [Neisseria meningitidis WUE 2594]
 gi|325127359|gb|EGC50294.1| hypothetical protein NMXN1568_1953 [Neisseria meningitidis N1568]
 gi|325129293|gb|EGC52131.1| hypothetical protein NMBOX9930304_1906 [Neisseria meningitidis
          OX99.30304]
 gi|325133260|gb|EGC55926.1| hypothetical protein NMBM13399_2083 [Neisseria meningitidis
          M13399]
 gi|325135313|gb|EGC57934.1| hypothetical protein NMBM0579_1979 [Neisseria meningitidis M0579]
 gi|325139405|gb|EGC61945.1| hypothetical protein NMBCU385_1819 [Neisseria meningitidis CU385]
 gi|325143496|gb|EGC65817.1| hypothetical protein NMBM01240013_2037 [Neisseria meningitidis
          M01-240013]
 gi|325201130|gb|ADY96585.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325201280|gb|ADY96734.1| conserved hypothetical protein [Neisseria meningitidis
          M01-240149]
 gi|325208934|gb|ADZ04386.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
          Length = 349

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M++   I+ L ++ F    +    F     + V +NG GKT++L+ +  L
Sbjct: 1  MSSNQYIQSLELTNFTVLPNDTFEFSENLNVIVAENGCGKTHLLKILYSL 50


>gi|163941362|ref|YP_001646246.1| hypothetical protein BcerKBAB4_3445 [Bacillus weihenstephanensis
          KBAB4]
 gi|163863559|gb|ABY44618.1| conserved hypothetical protein [Bacillus weihenstephanensis
          KBAB4]
          Length = 628

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  + +  FR+Y    ++  +  T  +G N  GK+ ILEA+   
Sbjct: 1  MKLTTIKLENFRSYHGEVVIDISNFTTLIGRNDAGKSTILEALEIF 46


>gi|332522831|ref|ZP_08399083.1| DNA repair protein RecN [Streptococcus porcinus str. Jelinkova
          176]
 gi|332314095|gb|EGJ27080.1| DNA repair protein RecN [Streptococcus porcinus str. Jelinkova
          176]
          Length = 553

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 13/93 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  ++I  F     + L FD   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2  LLEISIKNFAIIEEISLSFDNGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASIDVIR 56

Query: 67 IGSPSFFSTFARVEG---MEGLADISIKLETRD 96
           G+P      A +EG   ++  A++ + LE   
Sbjct: 57 HGAPK-----AEIEGFFSIDHKAELMVLLEANG 84


>gi|291461126|ref|ZP_06600275.1| DNA repair protein RecN [Fusobacterium periodonticum ATCC 33693]
 gi|291378785|gb|EFE86303.1| DNA repair protein RecN [Fusobacterium periodonticum ATCC 33693]
          Length = 558

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 84/279 (30%), Gaps = 29/279 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  +  ++ L I        L + F+    +  G+ G GK+ IL  I+ L   +     +
Sbjct: 1   MGRKFMLRELKIENLAIIDELDIEFEKGFIVLTGETGAGKSIILSGINLLIGEK-----A 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADIS-IKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             D+ R G  +  +        E    +  + ++T  D  +     N             
Sbjct: 56  SVDMIRDGEENLVAQGVFDVDEEQKKKLEAMGIDTDGDEIIIRRYYNRNGKARA-----F 110

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
           +    +  +  +  +         L  +V     +      +  +L+   + L  +    
Sbjct: 111 VNNVRITLADLKEIAST-------LVDIVGQHSHQMLLNRNNHIKLLD--SFLSKDEKDI 161

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
               SS+ +Q  E+  KI     E    L        Q E    +KL          D  
Sbjct: 162 KEKLSSLLSQYREINSKIEKIESEKKETLEKKEFYEYQLEEIEKLKLK---------DGE 212

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
              L+ EY K     +  + +        +  D  + + 
Sbjct: 213 DEILEAEYKKVFNAEKIREKVHESLEYLKYDDDSALGFI 251


>gi|288905264|ref|YP_003430486.1| hypothetical protein GALLO_1063 [Streptococcus gallolyticus
          UCN34]
 gi|288731990|emb|CBI13555.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
          Length = 656

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + + I  + I  +RN+  L +    + ++ VG+N VGKTN ++A+  +
Sbjct: 2  DSLYISRVVIKNYRNFKDLDVNLQHK-SVIVGENNVGKTNFIKALQLI 48


>gi|256005439|ref|ZP_05430402.1| DNA repair protein RecN [Clostridium thermocellum DSM 2360]
 gi|281417534|ref|ZP_06248554.1| DNA repair protein RecN [Clostridium thermocellum JW20]
 gi|255990579|gb|EEU00698.1| DNA repair protein RecN [Clostridium thermocellum DSM 2360]
 gi|281408936|gb|EFB39194.1| DNA repair protein RecN [Clostridium thermocellum JW20]
 gi|316940435|gb|ADU74469.1| DNA repair protein RecN [Clostridium thermocellum DSM 1313]
          Length = 570

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 36/183 (19%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        + +       +  G+ G GK+ I+++I+ +   R      Y D+ R
Sbjct: 2   LQRLEIQNVAIIDKVEIELGDGLNVLTGETGAGKSIIIDSINAILGQR-----LYKDLIR 56

Query: 67  IGSPSFFSTFA------RVE------GMEGLADISIKLETRDDRSVR-CLQINDVVI--- 110
            G               RVE      G++   D ++ +      S +   +IN  +    
Sbjct: 57  TGRDKAIVEAVFQVDKKRVEDLLEDFGIDWEEDGTLVVSREFTTSGKNTCRINGRIATVS 116

Query: 111 -------RVVDELNKHLRISWL-VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
                  R++D   +H   S L   S   +    +  R + L          + + +  +
Sbjct: 117 MLKQLGERLIDVHGQHDNQSLLRTESHIDLLDSFASSRLQSLKDE-------YLKHLETY 169

Query: 163 ERL 165
            ++
Sbjct: 170 RKI 172


>gi|149278765|ref|ZP_01884900.1| DNA repair protein [Pedobacter sp. BAL39]
 gi|149230384|gb|EDM35768.1| DNA repair protein [Pedobacter sp. BAL39]
          Length = 552

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 72/226 (31%), Gaps = 32/226 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +    S+ L  D    I  G+ G GK+ +L A+S +    +  + F      
Sbjct: 2   LQKLTIRNYALIDSVELELDKGLNIITGETGAGKSIMLGALSLILGQRAETKYFFN-QDK 60

Query: 63  DVTRIGS----PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
                G      +        + ++   + +++ E   D   R   IND  + +      
Sbjct: 61  KCIIEGQFQLKNTDLKVLFEEQDIDFYEESTLRREISTDGKSRAF-INDTPVTLSLMKQI 119

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFER------LMRG-- 168
             R+  +      +       +   +D +         +R     +++       ++   
Sbjct: 120 GERLIDIHSQHATLAVNDPAFQLAVVDTLANHQAALHSYRSSYKKYKKDQQTLAALQQAA 179

Query: 169 ---RNRL---------LTEGYFDSSWCSSIEAQMAELGVKINIARV 202
              R+R          L +    +     +EA++  L    +I R 
Sbjct: 180 DEARSRQDYEQFLFNELEQAALKAEEQQQLEAELQTLSNAESIKRA 225


>gi|89900442|ref|YP_522913.1| DNA repair protein RecN [Rhodoferax ferrireducens T118]
 gi|89345179|gb|ABD69382.1| DNA repair protein RecN [Rhodoferax ferrireducens T118]
          Length = 558

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + +K + + +F     L L      T+  G+ G GK+ +++A+  ++ GR     +   V
Sbjct: 1  MSLKRIVLRDFVIVRELDLDLADGFTVLTGETGAGKSILIDALQLVTGGR-----ADVGV 55

Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
           R GS     +       +  AD+++ LET  
Sbjct: 56 IREGSSRTDVSA----EFDATADLALWLETAG 83


>gi|126463296|ref|YP_001044410.1| chromosome segregation protein SMC [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104960|gb|ABN77638.1| chromosome segregation protein SMC [Rhodobacter sphaeroides ATCC
           17029]
          Length = 1170

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/237 (18%), Positives = 79/237 (33%), Gaps = 41/237 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R A 
Sbjct: 20  LRFTRLRLNGFKSFVDPTDLVIHEGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGAG 79

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G+      +F      ++  + LA         I++  R  R +    + N  
Sbjct: 80  MEDVIFAGAATRPARNFAEVALVLDNADRLAPAGFNDADTIEIVRRITRDAGSAYKANTK 139

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR-----MVFAIDPRH 155
            +R  D   L          P++ R      + +     RRR L+       ++      
Sbjct: 140 DVRARDIQMLFADASTGAHSPALVRQGQISELINAKPKARRRILEEAAGISGLYQRRHEA 199

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSS 210
             R+   E+ +                   +  Q++ L    K      E+   L  
Sbjct: 200 ELRLAATEQNL----------ARVEDVLDQLAQQLSTLARQAKQAARYREIGEELRR 246


>gi|67539458|ref|XP_663503.1| hypothetical protein AN5899.2 [Aspergillus nidulans FGSC A4]
 gi|40738572|gb|EAA57762.1| hypothetical protein AN5899.2 [Aspergillus nidulans FGSC A4]
 gi|259479933|tpe|CBF70609.1| TPA: Condensin subunit [Source:UniProtKB/TrEMBL;Acc:Q8J150]
           [Aspergillus nidulans FGSC A4]
          Length = 1179

 Score = 47.6 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRITEIIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDTAKSPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|320582364|gb|EFW96581.1| SMC chromosomal ATPase, putative [Pichia angusta DL-1]
          Length = 1092

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 95/284 (33%), Gaps = 27/284 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LS-----PGRGFRRA 59
            I  + +  F +Y+     F  +  + +G NG GK+  + AI   L+      G+     
Sbjct: 35  AILRVKLRNFMSYSLTEFHFGPKMNLIIGPNGTGKSTFVCAICIGLAGKLEYLGKS--SM 92

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
           +     + G     S    ++  E    + ++ E    +      IN  +     + +L 
Sbjct: 93  NVDHFIKSGQKEA-SIELELKAAEKFETVIVEREF-VRKGKTSWYINKKLSNELQIKKLL 150

Query: 118 KHLRISWLVPSMDRIFSGLSMER-RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           K   I       D +   L  +R  RF       +     R   + E L+   N+L+   
Sbjct: 151 KDFNIQL-----DNLCQFLPQDRVARFASLKPEELLKELERLYENGE-LLEQHNKLIELY 204

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                   +    +A++  ++   R + ++ L     +Y + +                 
Sbjct: 205 SLRQEKIKA----LADIEFQLTSLREKRVS-LEERAQQYQEYQLLEKELQRHETLRPYVE 259

Query: 237 DQSFCALKEEYAKKLFD-GRKMDSMSRRTLIGPHRSDLIVDYCD 279
             +    +EE  K+  +  +++    +R L  P +  L   + +
Sbjct: 260 LSTKKRAREELKKEAEEMSQRIKEFDKRIL--PMKEKLQQFHRN 301


>gi|313232328|emb|CBY09437.1| unnamed protein product [Oikopleura dioica]
          Length = 1115

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
           KIK + +  F  +  L L    + T   G NG GK+  + A++ +  GR
Sbjct: 55  KIKKIILENFMCHRKLELELGDRITFITGKNGSGKSATMNALTAVFGGR 103


>gi|257465179|ref|ZP_05629550.1| ATP-dependent OLD family endonuclease [Actinobacillus minor 202]
 gi|257450839|gb|EEV24882.1| ATP-dependent OLD family endonuclease [Actinobacillus minor 202]
          Length = 586

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI+ + I  +R+   L++       I +G N  GK+N+L AI F 
Sbjct: 1  MKIQSIEIKNWRSIKELKIA-AQDLMIIIGQNNHGKSNLLSAILFF 45


>gi|257084589|ref|ZP_05578950.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256992619|gb|EEU79921.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
          Length = 674

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K+  L I  FR++   +  + FD   T  +G N  GKT IL AI
Sbjct: 1  MKLTRLEICNFRSFGSEAETIYFDE-FTGIIGHNSAGKTTILNAI 44


>gi|156139595|gb|ABU51098.1| unknown [uncultured bacterium Bio5]
          Length = 409

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 7  IKFLNISEFRNY-ASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASY 61
          +K ++I  F+++     +  D    T  VG NG GK+NI +AIS++      +  R A  
Sbjct: 30 LKRIHILGFKSFCDRTEVSLDTHGVTAIVGPNGCGKSNISDAISWVLGEQSAKSLRGAKM 89

Query: 62 ADVTRIGSPS 71
           DV   G+  
Sbjct: 90 EDVIFSGTRE 99


>gi|166713775|ref|ZP_02244982.1| hypothetical protein Xoryp_20640 [Xanthomonas oryzae pv.
          oryzicola BLS256]
          Length = 397

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI+ + +  F+ +  + L       + VG NG GK+ + +   FL
Sbjct: 1  MKIESIRLRNFKAFRDVHLKDMPSFLVVVGANGSGKSTLFDVFGFL 46


>gi|159485144|ref|XP_001700607.1| structural maintenance of chromosomes protein 1 [Chlamydomonas
          reinhardtii]
 gi|158272131|gb|EDO97936.1| structural maintenance of chromosomes protein 1 [Chlamydomonas
          reinhardtii]
          Length = 818

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +I  L +  F++Y     +      T  +G NG GK+N+++AISF
Sbjct: 13 RIDRLEVENFKSYRGRQFIGPFKPFTAVIGPNGSGKSNLMDAISF 57


>gi|149924750|ref|ZP_01913096.1| hypothetical protein PPSIR1_14490 [Plesiocystis pacifica SIR-1]
 gi|149814396|gb|EDM73991.1| hypothetical protein PPSIR1_14490 [Plesiocystis pacifica SIR-1]
          Length = 1046

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 16/162 (9%)

Query: 6   KIKFLNISEFR--NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +++ + + ++R        L   A+  +  G NG GK++++EA+  +  G   R A   D
Sbjct: 277 RLESVELEDYRLPGLRRFVLDPRARLHLLHGHNGSGKSSLVEALELMLTGSIERLAGVDD 336

Query: 64  ---VTR-IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
              V R   +P        +    G+   S     R  +        D+  R   EL   
Sbjct: 337 YAGVIRNRWAPKHRHASVELRCSGGVHRFSFADGARPPK--------DIAGRSAVELAAS 388

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
            R+   V  MDR+      +R   L    FA D R R R   
Sbjct: 389 FRLDQTV--MDRLVRTSDADRAAELLAAFFAEDTRARERWRQ 428


>gi|126238208|gb|ABO07415.1| SMC1 [Solanum lycopersicum]
          Length = 263

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 19/144 (13%)

Query: 14  EFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYADVT----- 65
            F++Y     +      T  +G NG GK+N+++AISF+   R    R A   D+      
Sbjct: 1   NFKSYKGFQTIGPFYDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDD 60

Query: 66  RIGSPSFFSTFAR----------VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
           R         F R          ++    +          D ++V   + N   ++ +D 
Sbjct: 61  REKEQRGRRAFVRLIYQLANGTEIQFTRAITSAGASEYRIDGKAVNWDEYN-AKLKSLDI 119

Query: 116 LNKHLRISWLVPSMDRIFSGLSME 139
           L K          ++ I S    E
Sbjct: 120 LVKARNFLVFQGDVESIASKNPKE 143


>gi|332830417|gb|EGK03045.1| DNA repair protein RecN [Dysgonomonas gadei ATCC BAA-286]
          Length = 552

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 66/205 (32%), Gaps = 22/205 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  +    SL + F++  ++  G+ G GK+ IL A+S +   R     +     +
Sbjct: 2   LKSLYIKNYALIDSLEIDFESGFSVITGETGAGKSIILGALSLILGQR-----ADIKAIK 56

Query: 67  IGSPSFF------------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
            G                   F   +G+E      I              IND  + + D
Sbjct: 57  QGESKCIIEGAFDVSAYDLKDFCEEKGIEYDPHSYILRREILSTGKSRAFINDSPVGLND 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFE---RLMRGR 169
                 ++  +      +    S  + + +D +    A+   +++    ++   + +   
Sbjct: 117 LKELGSQLIDIHSQHQNLLLSDSRFQMQVVDALAGNKALLKEYQQAFHQYKQTEKALAEL 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELG 194
              + +   +  +       + E  
Sbjct: 177 RDTIRKSKEEEDYLRFQYQALHEAA 201


>gi|326926166|ref|XP_003209275.1| PREDICTED: structural maintenance of chromosomes protein 4-like
           [Meleagris gallopavo]
          Length = 1300

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA    L  F  + +  +G NG GK+N+++A+ F+   R    R
Sbjct: 76  APRLMITHIVNQNFKSYAGEQTLGPFHKRFSCIIGPNGSGKSNVIDAMLFVFGYRAQKIR 135

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 136 SKKLSVLIHNSEEHTDIQSCSVEVHFQKI 164


>gi|325978249|ref|YP_004287965.1| putative ATP-dependent endonuclease of the OLD family
          [Streptococcus gallolyticus subsp. gallolyticus ATCC
          BAA-2069]
 gi|325178177|emb|CBZ48221.1| putative ATP-dependent endonuclease of the OLD family
          [Streptococcus gallolyticus subsp. gallolyticus ATCC
          BAA-2069]
          Length = 656

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + + I  + I  +RN+  L +    + ++ VG+N VGKTN ++A+  +
Sbjct: 2  DSLYISRVVIKNYRNFKDLDVNLQHK-SVIVGENNVGKTNFIKALQLI 48


>gi|188588555|ref|YP_001921543.1| DNA repair protein RecN [Clostridium botulinum E3 str. Alaska E43]
 gi|188498836|gb|ACD51972.1| DNA repair protein RecN [Clostridium botulinum E3 str. Alaska E43]
          Length = 562

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 25/164 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI  F     + + F+    I  G+ G GK+ +++AI ++  G+ F       + R
Sbjct: 2   LIQLNIKNFALIQEITMNFNEGFNILSGETGAGKSILIDAIDYVLGGK-F----SKSLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G    +           L ++ I+L+   D  +  L I+    +    L K    ++L 
Sbjct: 57  TGENKTYVEAIFTVENSLLKNVLIELDIESDDDM--LIISRETHQSGRSLIKVNGKTFLT 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
             + +I       R + LD                  + +  RN
Sbjct: 115 SQLKKI-------REKLLDIHGQHQ-----------NQTLLQRN 140


>gi|149237575|ref|XP_001524664.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146451261|gb|EDK45517.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 1449

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 11/118 (9%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
             R+ I+ L ++ F++YA  +    F +  +  VG NG GK+N+++A+ F+   +    R
Sbjct: 220 QPRLVIEKLVLTNFKSYAGCQTIGPFHSSFSSVVGPNGSGKSNVIDAMLFVFGFKATKMR 279

Query: 58  RASYADVTRI---GSPSFFSTFAR----VEGMEGLADISIKLETRDDRSVRCLQINDV 108
           +   +++        P F          ++  E    +   L++    S +  Q N  
Sbjct: 280 QGKISELIHNSGEEKPDFCQVDIHFKQVIDDHEKSHKVDAPLDSELIISRKAYQNNQS 337


>gi|154252132|ref|YP_001412956.1| hypothetical protein Plav_1680 [Parvibaculum lavamentivorans
          DS-1]
 gi|154156082|gb|ABS63299.1| hypothetical protein Plav_1680 [Parvibaculum lavamentivorans
          DS-1]
          Length = 771

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +++  + I  +R++ +   ++ D   T+ +G N  GKTN L A+  L
Sbjct: 1  MRLTKVQIKGYRSFKAKTTILLDNHITVLLGANDHGKTNFLSALEHL 47


>gi|125973332|ref|YP_001037242.1| DNA repair protein RecN [Clostridium thermocellum ATCC 27405]
 gi|125713557|gb|ABN52049.1| DNA replication and repair protein RecN [Clostridium thermocellum
           ATCC 27405]
          Length = 570

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 36/183 (19%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        + +       +  G+ G GK+ I+++I+ +   R      Y D+ R
Sbjct: 2   LQRLEIQNVAIIDKVEIELGDGLNVLTGETGAGKSIIIDSINAILGQR-----LYKDLIR 56

Query: 67  IGSPSFFSTFA------RVE------GMEGLADISIKLETRDDRSVR-CLQINDVVI--- 110
            G               RVE      G++   D ++ +      S +   +IN  +    
Sbjct: 57  TGRDKAIVEAVFQVDKKRVEDLLEDFGIDWEEDGTLVVSREFTTSGKNTCRINGRIATVS 116

Query: 111 -------RVVDELNKHLRISWL-VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
                  R++D   +H   S L   S   +    +  R + L          + + +  +
Sbjct: 117 MLKQLGERLIDVHGQHDNQSLLRTESHIDLLDSFASSRLQSLKDE-------YLKHLETY 169

Query: 163 ERL 165
            ++
Sbjct: 170 RKI 172


>gi|306833006|ref|ZP_07466138.1| DNA repair protein RecN [Streptococcus bovis ATCC 700338]
 gi|304424905|gb|EFM28039.1| DNA repair protein RecN [Streptococcus bovis ATCC 700338]
          Length = 552

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 81/230 (35%), Gaps = 40/230 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEISIKNFAIIEEISLTFENGMTVLTGETGAGKSIIIDAMNLMLGAR-----ASLDVIR 56

Query: 67  IGSPSFFSTFARVEGM--------------EGLADISIKLETRDD---RSVRCLQINDVV 109
            G+       A +EG+              E   D++ +L  R D         +IN  +
Sbjct: 57  HGANK-----AEIEGLFSVGENPALTQILEENGIDVTEELIIRRDILQNGRSIGRINGQM 111

Query: 110 IR--VVDELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERL 165
           +    +  + ++L         + +       R    F +     +   ++     + +L
Sbjct: 112 VNLTTLRAVGQYLVDIHGQHDQEELMKPNMHIRMLDEFGNEQFADVKKHYQELFESYRQL 171

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVK---------INIARVEMIN 206
            +             +    +E Q+AE+            +N  R +++N
Sbjct: 172 RKRVVTKQKNEQEHKARIEMLEFQIAEIEAAALKSGEDQVLNQKRDKLLN 221


>gi|302392479|ref|YP_003828299.1| DNA repair protein RecN [Acetohalobium arabaticum DSM 5501]
 gi|302204556|gb|ADL13234.1| DNA repair protein RecN [Acetohalobium arabaticum DSM 5501]
          Length = 581

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 90/302 (29%), Gaps = 38/302 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           +  L+I  F     L++ F     I  G+ G GK+ I++A+  L  GR      R     
Sbjct: 2   LLNLSIYNFALIEELQIDFTGNLNIITGETGAGKSIIVKALQMLLGGRASTDYIRSGQKK 61

Query: 63  DVTRIGS----PSFFSTFARVEGMEGLADISIKLETRDD-RSVRCLQINDVVI--RVVDE 115
            V                    G++      I L          C +IN  ++  +V  E
Sbjct: 62  AVIEANCSIKNDQPVKNKLEQLGIDYDPTEGIILTREITHNGNNCSRINGRIVTLKVTRE 121

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           L+++L           +F           F  + +  +  +        ++       L 
Sbjct: 122 LSQYLIEIHSQHEHQALFKSQKQLTLLDDFGGKEISELLKKTEMIYQRLKKKQEEYTALN 181

Query: 174 TEGYFDSSWCSSIEAQMAE--------------LGVKINIARVEMINALSSLIMEYVQKE 219
                 +     ++ Q+ E              L  K  ++ +E I  ++  I   + + 
Sbjct: 182 QNEKEKARRIDLLQFQLDEIEEADLTAGEDEELLAEKRRLSNIEEIAEITGRIYAGLYES 241

Query: 220 NFPHI-----------KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
            F              +L+     D + +     L+E   K      ++D    +    P
Sbjct: 242 GFEETVIIDQLNQFVKELNYISSFDDELESIIEMLEEAVYKLQEAAYQLDDYQHQLEFNP 301

Query: 269 HR 270
            R
Sbjct: 302 QR 303


>gi|260596317|ref|YP_003208888.1| hypothetical protein CTU_05250 [Cronobacter turicensis z3032]
 gi|260215494|emb|CBA27633.1| hypothetical protein CTU_05250 [Cronobacter turicensis z3032]
          Length = 678

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 31/232 (13%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           +     +R+++ D E+ +      +     D      + A + EL  K    R +  + L
Sbjct: 409 WQRFDMYRQQLADIEQQLEQAAANIARAPEDEQLMD-LFAALRELDHKREKQRQKYRSLL 467

Query: 209 SSLIM------------EYVQKENFPHIKLS------------LTGFLDGKFDQSFCALK 244
                            +           LS            L  + D         L 
Sbjct: 468 EEAKRTKQQQLDCVRQVQKAHDITRSQHGLSSAFKNAQETINLLDYYSDVLTQARVKKLS 527

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +        + + +     I P   D+ +VD     I     S GE+++  + I    
Sbjct: 528 ANFEIAYHKLARKEDLQLNAHINPQTFDVELVDEKGSVINRKLLSAGEKQIYAIAI---- 583

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
              ++ T+G    +++D     LD   R+ L      +   Q+ +  TD  V
Sbjct: 584 LEALAKTSGRDFPVIIDTPLGRLDSQHRDKLINHYFPEASHQVVLLSTDTEV 635



 Score = 39.5 bits (91), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPGR 54
          IK L +  FR +  +  +    +            +F G NG GKT+IL AI     GR
Sbjct: 12 IKQLVLHNFRVFCGTHTIDLAPRKRPHEVNPRPIVLFGGLNGAGKTSILSAIRLALYGR 70


>gi|209921768|ref|YP_002295852.1| hypothetical protein ECSE_4577 [Escherichia coli SE11]
 gi|209915027|dbj|BAG80101.1| conserved hypothetical protein [Escherichia coli SE11]
          Length = 681

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 70/232 (30%), Gaps = 31/232 (13%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           +     +R+++ D E+ +      +     D      + A + EL  K    R +  + L
Sbjct: 412 WQRFDMYRQQLADIEQQLEQAAANIARAPEDEQLMD-LFAALRELDHKREKQRQKYRSLL 470

Query: 209 SSLIM------------EYVQKENFPHIKLS------------LTGFLDGKFDQSFCALK 244
                            +           LS            L  + D         L 
Sbjct: 471 EEAKRTKQQQLDCVRQVQKAHDITRSQHGLSSAFKNAQETINLLDYYSDVLTQARVKKLS 530

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +        + + +     I P   D+ +VD     I     S GE+++  + I    
Sbjct: 531 ANFEIAYHKLARKEDLQLNAHINPQTFDVELVDEKGSVINRKLLSAGEKQIYAIAI---- 586

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
              ++ T+G    +++D     LD   R+ L      +   Q+ +  TD  V
Sbjct: 587 LEALAKTSGRDFPVIIDTPLGRLDSQHRDKLINHYFPEASHQVVLLSTDTEV 638



 Score = 39.9 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPGR 54
          IK L +  FR +  +  +    +            +F G NG GKT+IL AI     GR
Sbjct: 15 IKQLVLHNFRVFNGTHTIDLAPRKRPHEVNPRPIVLFGGLNGAGKTSILSAIRLALYGR 73


>gi|33862269|ref|NP_893830.1| DNA repair protein RecN [Prochlorococcus marinus subsp. pastoris
           str. CCMP1986]
 gi|33634487|emb|CAE20172.1| DNA REPAIR PROTEIN RECN, ABC transporter [Prochlorococcus marinus
           subsp. pastoris str. CCMP1986]
          Length = 559

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 28/218 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +        + + F+    IF GD+G GK+ IL++++ L  G          + R
Sbjct: 2   LIQLTLKNIALIEIIEINFEKGLNIFTGDSGSGKSLILDSLNVLFGGS---NIPLNHLIR 58

Query: 67  IGSPSF-----------FSTFARVEG---MEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G                + +    G   + G   +  K   ++++ +    IN+  I  
Sbjct: 59  PGKEECLIEAKFSNSSQVTDWFSKNGFYKISGEIFVKRKSYIKNNKILSKYTINNFSISK 118

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF----AIDPRHRRRMIDFERLMRG 168
                  L +       D +       RR  +D +       I+   +    +F+ L + 
Sbjct: 119 KLLEELGLLLVDFAGQSDSVLYDNQDYRRSIIDDLGSKELKTINFEIKNMWQEFQNLRKR 178

Query: 169 RNRLLTEGYFDS-------SWCSSIEAQMAELGVKINI 199
           R  ++                   +E      G +I  
Sbjct: 179 RQDMMHSYKQKEENNFVIKEMYKVLEEANLNSGNEIFE 216


>gi|116196206|ref|XP_001223915.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
 gi|88180614|gb|EAQ88082.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
          Length = 1131

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           +++  L I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRVTELIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E    IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNKDKRRSPIGFEEYTTISVTRQIVLGGTTKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|240168793|ref|ZP_04747452.1| ATPase [Mycobacterium kansasii ATCC 12478]
          Length = 387

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 17/119 (14%)

Query: 12  ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPS 71
           +  +R+   L +    Q  +  G NG GK+N+  A+  L+     R  + A + R G  S
Sbjct: 7   VENYRSLRQLVVPL-RQLNVVTGANGTGKSNLYRALRLLA--DSARNGAVAALAREGGLS 63

Query: 72  FFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                              RV+G      +S+KL    D     L +  + I    E  
Sbjct: 64  STIWAGPAVIGRSVRQGRHRVQGTVRTESVSLKLGFAGDEFGYALDL-GLPIATRTEFG 121


>gi|227821139|ref|YP_002825109.1| chromosome segregation protein SMC [Sinorhizobium fredii NGR234]
 gi|227340138|gb|ACP24356.1| chromosome segregation protein SMC [Sinorhizobium fredii NGR234]
          Length = 1153

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 99/311 (31%), Gaps = 50/311 (16%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFNKLRLLGFKSFVEPTEFIIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  +  A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVGLYLDNSDRTAPAAFNDSDEIQVTRRIEREQGSVYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLDRMV---FAIDPRH-- 155
             R  D   L          PSM        + +     RR+ L+           RH  
Sbjct: 121 EARAKDVQLLFADASTGARSPSMVGQGRIGELIAAKPQARRQLLEEAAGISGLHSRRHEA 180

Query: 156 ----------RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR---- 201
                       R+ D    +  +   L      ++    + A++      +   R    
Sbjct: 181 ELRLKAAETNLERLDDVTSQLESQIESLKRQSRQANRFKMLSAEIRRHEAILLHIRWVQA 240

Query: 202 -------VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
                     +N +++L+ E  Q +       ++      +  ++   L     +     
Sbjct: 241 KEAESEAASQLNQITALVAEKAQAQMEAAKHQAIASLKLPELRENEAKLAAALQRLQIAR 300

Query: 255 RKMDSMSRRTL 265
            +++  + R L
Sbjct: 301 AQLEEDAGRIL 311


>gi|222529326|ref|YP_002573208.1| DNA repair protein RecN [Caldicellulosiruptor bescii DSM 6725]
 gi|222456173|gb|ACM60435.1| DNA repair protein RecN [Caldicellulosiruptor bescii DSM 6725]
          Length = 551

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 74/208 (35%), Gaps = 31/208 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I        L + FD   TI  G+ G GK+ I++++S L   + F+     ++ R
Sbjct: 2   LKRLLIENIAIIDRLDIEFDKGLTILTGETGAGKSIIIDSLSLLFGTK-FK----KEIIR 56

Query: 67  IGS-PSFFSTFARVEG---MEGLADISIKLETR--------DDRSVRCLQIN-------- 106
            G   +  S    +E    +E L  + I LE                  ++N        
Sbjct: 57  TGCTKACVSAVFEIEKKSTIERLTQMGISLEDNYLIVSREVYSSGKNICRVNNQFVLLST 116

Query: 107 -DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
              + + + E++       L     ++         RF  R +  +   ++    D++  
Sbjct: 117 LREITKHIFEIHGQNETHLLNDKRIQLLYID-----RFCGRELEELKAEYKDLYHDYQEK 171

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
            R   +++T+          +  Q+ E+
Sbjct: 172 KRLYEQIITKEEERERQLDLLNYQINEI 199


>gi|149184725|ref|ZP_01863043.1| ATPase [Erythrobacter sp. SD-21]
 gi|148832045|gb|EDL50478.1| ATPase [Erythrobacter sp. SD-21]
          Length = 554

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 71/214 (33%), Gaps = 37/214 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  R+ I+ + +       +L L F     +  G+ G GK+ +L+++  +   R     +
Sbjct: 1   MLTRLAIRNIVL-----IEALDLDFGRGLGVLTGETGAGKSILLDSLGLVLGNR-----A 50

Query: 61  YADVTRIGSPSFFSTF-----------------ARVEGMEGLADISIKLETRDDRSVRCL 103
            + + R G P    +                  A +E  EG   + I+ + + D   +  
Sbjct: 51  DSGLVRAGEPKASVSASFEFAALPDAIATALDDADIEIEEGE-PLIIRRQLKADGGSKAF 109

Query: 104 QINDVV-IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
             +  V + ++ E+   L           + +      R  LDR   A   +  +    +
Sbjct: 110 INDQPVGVALLREIAGALVELHGQHDDRGLVN--PRGHRALLDRFAGAGTAKVEQAWTKW 167

Query: 163 ERL---MRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
                 +      L +   D        A +AEL
Sbjct: 168 RATEDRLAEARDALEQAKLDQDLLL---AHLAEL 198


>gi|254302156|ref|ZP_04969514.1| possible ATP binding protein [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
 gi|148322348|gb|EDK87598.1| possible ATP binding protein [Fusobacterium nucleatum subsp.
          polymorphum ATCC 10953]
          Length = 352

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          IK + I  +R    L +    ++  F+GDNG  KT ILE++  
Sbjct: 2  IKSIVIKNYRGIKDLEIDNFKKYNFFIGDNGSKKTTILESLGI 44


>gi|121635740|ref|YP_975985.1| putative ATP-binding protein [Neisseria meningitidis FAM18]
 gi|161869110|ref|YP_001598276.1| ATP-binding protein [Neisseria meningitidis 053442]
 gi|120867446|emb|CAM11218.1| putative ATP-binding protein [Neisseria meningitidis FAM18]
 gi|161594663|gb|ABX72323.1| ATP-binding protein [Neisseria meningitidis 053442]
 gi|254673452|emb|CBA08820.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
 gi|325131325|gb|EGC54036.1| hypothetical protein NMBM6190_2007 [Neisseria meningitidis M6190]
 gi|325137354|gb|EGC59942.1| hypothetical protein NMBES14902_1984 [Neisseria meningitidis
          ES14902]
 gi|325141358|gb|EGC63841.1| hypothetical protein NMB9615945_2024 [Neisseria meningitidis
          961-5945]
 gi|325199173|gb|ADY94629.1| conserved hypothetical protein [Neisseria meningitidis G2136]
 gi|325206986|gb|ADZ02439.1| conserved hypothetical protein [Neisseria meningitidis
          M04-240196]
          Length = 349

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M++   I+ L ++ F    +    F     + V +NG GKT++L+ +  L
Sbjct: 1  MSSNQYIQSLELTNFTVLPNDTFEFSENLNVIVAENGCGKTHLLKILYSL 50


>gi|84516946|ref|ZP_01004304.1| DNA repair protein RecN [Loktanella vestfoldensis SKA53]
 gi|84509414|gb|EAQ05873.1| DNA repair protein RecN [Loktanella vestfoldensis SKA53]
          Length = 540

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 21/142 (14%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTF- 76
              L L F     +  G+ G GK+ +L+++ F+   RG      A++ R G+     T  
Sbjct: 4   IDRLELAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVRQGAEQGEVTAW 58

Query: 77  ----------ARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR--VVDELNKHLRIS 123
                     A ++      +  + L   + R  R    +ND  +   V+  L+  L   
Sbjct: 59  FDLSTDHPARAILQDAGLEVEDELILRRINTRDGRKTAWVNDRRVSGDVLRALSDTLVEL 118

Query: 124 WLVPSMDRIFSGLSMERRRFLD 145
                   + +      R+ LD
Sbjct: 119 HGQHDDRGLLN--PRGHRQMLD 138


>gi|146295676|ref|YP_001179447.1| ATP-dependent OLD family endonuclease [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409252|gb|ABP66256.1| ATP-dependent endonuclease of the OLD family-like protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 581

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 25/176 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-------- 55
           + I  + I  ++++  S  ++ D +   F+G N  GK+ IL+AI    P           
Sbjct: 1   MYISKMRIRNYKSFLDSGEIMLDEKIFAFIGQNNTGKSTILDAIKIFFPNYKKQVDRKDI 60

Query: 56  FRRASYADVTR---------IGSPSFFSTFARVEGMEGLAD-------ISIKLETRDDRS 99
            R  +   +             +        +VE +   AD       + + +E   +++
Sbjct: 61  HRGINDNIIIEMWLGRVGSFFENTRTDEVDRQVEKLLSKADDNSLYIKLVLNIEDSTNKN 120

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH 155
           +R     D        L K L    ++P++       + +R+ +L  ++  +D  +
Sbjct: 121 IRKYFDKDEEEIKEAALKKLLPELVVIPAIRDPEKESTADRKSYLRSLIDILDSEY 176


>gi|71667236|ref|XP_820569.1| structural maintenance of chromosome protein 4 [Trypanosoma cruzi
           strain CL Brener]
 gi|70885919|gb|EAN98718.1| structural maintenance of chromosome protein 4, putative
           [Trypanosoma cruzi]
          Length = 1402

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 3   NRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
            R+ I+ + +  F++Y        F    T  +G NG GK+N+++A+ F+     +  R 
Sbjct: 59  TRMVIRDIEVENFKSYAGKHCIGPFHKTFTAVIGPNGSGKSNVIDAMLFVFGRNAKKIRL 118

Query: 59  ASYADVTRIGSPSFFSTFARV 79
              +++    +      +A V
Sbjct: 119 ERLSELIHSSAAHPNQAYASV 139


>gi|77462669|ref|YP_352173.1| DNA repair protein RecN [Rhodobacter sphaeroides 2.4.1]
 gi|77387087|gb|ABA78272.1| DNA repair protein RecN [Rhodobacter sphaeroides 2.4.1]
          Length = 546

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2  LRSLDIRDMLIIDRLSLAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67 IGSPSFFSTFA 77
           G+     T  
Sbjct: 57 AGADKGEVTAV 67


>gi|189194603|ref|XP_001933640.1| condensin subunit Cut3 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187979204|gb|EDU45830.1| condensin subunit Cut3 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1471

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 10/113 (8%)

Query: 7   IKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           I +L ++ F++YA    +  F A  +  VG NG GK+N+++++ F+   R    R++  +
Sbjct: 266 ITWLVLNNFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVFGFRASKMRQSKLS 325

Query: 63  DVTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
            +    +      +  VE               +   ++   S R  + N   
Sbjct: 326 ALIHNSAAFPDLDYCEVEVHFQEVKDLPNGGHEVIPGSQLVVSRRAFKNNSSK 378


>gi|126697241|ref|YP_001092127.1| DNA repair protein RecN, ABC transporter [Prochlorococcus marinus
           str. MIT 9301]
 gi|126544284|gb|ABO18526.1| DNA repair protein RecN, ABC transporter [Prochlorococcus marinus
           str. MIT 9301]
          Length = 559

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 59/166 (35%), Gaps = 26/166 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++KI+ + +        + + F+    I  GD+G GK+ IL++++ L  G       
Sbjct: 1   MLVQLKIENIAL-----IEIIEINFEKGLNIITGDSGSGKSLILDSLNALFGGT---NIP 52

Query: 61  YADVTRIGS-----PSFFSTFARVEGMEGLADISI---KLETRDDRSVRCLQI------N 106
              + R G       + FS+  ++          I   +L+ +     +  +I      N
Sbjct: 53  LKHLIRPGKDFCVIEAIFSSSIQINNWLIRNGFEITSSELQIKRKSYKKNNKILTKYSLN 112

Query: 107 DVVIRVVD--ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           D+ I      +L   L         D        +RR  +D +   
Sbjct: 113 DLPINRQSLEKLGGFL--IDFAGQSDTFIFDSLDKRRLIIDDLCSQ 156


>gi|113867151|ref|YP_725640.1| ATPase DNA repair [Ralstonia eutropha H16]
 gi|113525927|emb|CAJ92272.1| ATPase DNA repair [Ralstonia eutropha H16]
          Length = 584

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 40/213 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +L L F    T+F G+ G GK+ +++A++ +   R     + A V R
Sbjct: 2   LRSLSIRDFVIVDTLDLDFTTGFTVFTGETGAGKSILIDALALVLGER-----ADAGVVR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            G+P    +                    E  +G+  + ++         +   IN    
Sbjct: 57  EGAPRASVSATFSTHPALDAWLAERELNSEAEDGVHTVLLRRTVDAGGRSKAF-INGAAA 115

Query: 111 ----------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
                     ++VD   +H     L P   R+               +            
Sbjct: 116 TLAQLREVGDQLVDIHGQHAHQLLLRPDAQRLLFDA--------HAGLTQQAGAVAEAWR 167

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
            +   +R R  +  +          +E Q+ EL
Sbjct: 168 AWRACVRQREAVEHQSREMQLERERLEWQVGEL 200


>gi|45383133|ref|NP_989849.1| structural maintenance of chromosomes protein 4 [Gallus gallus]
 gi|26801168|emb|CAD58707.1| condensin complex subunit [Gallus gallus]
          Length = 1274

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA    L  F  + +  +G NG GK+N+++A+ F+   R    R
Sbjct: 50  APRLMITHIVNQNFKSYAGEQTLGPFHKRFSCIIGPNGSGKSNVIDAMLFVFGYRAQKIR 109

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 110 SKKLSVLIHNSEEHTDIQSCSVEVHFQKI 138


>gi|260460274|ref|ZP_05808526.1| chromosome segregation protein SMC [Mesorhizobium opportunistum
           WSM2075]
 gi|259033919|gb|EEW35178.1| chromosome segregation protein SMC [Mesorhizobium opportunistum
           WSM2075]
          Length = 1152

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K   L +  F+++      V +   T  VG NG GK+N++EA+ ++   S  +  R + 
Sbjct: 1   MKFSRLRLLGFKSFVEPGEFVIERGLTGIVGPNGCGKSNLVEALRWVMGESSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSGTRPARNTAEVTLFLDNSDRSAPAAFNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|238565545|ref|XP_002385881.1| hypothetical protein MPER_16097 [Moniliophthora perniciosa FA553]
 gi|215436169|gb|EEB86811.1| hypothetical protein MPER_16097 [Moniliophthora perniciosa FA553]
          Length = 134

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           +I  + +  F  Y            + +G NG GK++I  AI+           R  S  
Sbjct: 11  QIVRMQLHNFLTYDFAEFTCGPYLNMIIGPNGTGKSSIACAIALGLNWSPSILGRAESIQ 70

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
              +    + +     ++  +G  ++ I+             +N    
Sbjct: 71  SFVKNDKDTGYVEI-EMKAPKGRPNLVIRRNINSASKTNSFTLNGKPA 117


>gi|162453150|ref|YP_001615517.1| hypothetical protein sce4874 [Sorangium cellulosum 'So ce 56']
 gi|161163732|emb|CAN95037.1| hypothetical protein sce4874 [Sorangium cellulosum 'So ce 56']
          Length = 345

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ L++ +F  ++   LVF     +FVG+NG GKT+ L+    L     
Sbjct: 2  IRSLHVKDFTVFSEAELVFGEHLNVFVGENGTGKTHALKLAYSLLATSS 50


>gi|146276755|ref|YP_001166914.1| DNA repair protein RecN [Rhodobacter sphaeroides ATCC 17025]
 gi|145554996|gb|ABP69609.1| DNA repair protein RecN [Rhodobacter sphaeroides ATCC 17025]
          Length = 546

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2  LRSLDIRDMLIIDRLSLAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67 IGSPSFFSTFA 77
           G+     T  
Sbjct: 57 AGADKGEVTAV 67


>gi|256851324|ref|ZP_05556713.1| DNA repair protein RecN [Lactobacillus jensenii 27-2-CHN]
 gi|260660748|ref|ZP_05861663.1| DNA repair protein RecN [Lactobacillus jensenii 115-3-CHN]
 gi|282933231|ref|ZP_06338618.1| DNA repair protein RecN [Lactobacillus jensenii 208-1]
 gi|297206194|ref|ZP_06923589.1| DNA repair protein RecN [Lactobacillus jensenii JV-V16]
 gi|256616386|gb|EEU21574.1| DNA repair protein RecN [Lactobacillus jensenii 27-2-CHN]
 gi|260548470|gb|EEX24445.1| DNA repair protein RecN [Lactobacillus jensenii 115-3-CHN]
 gi|281302735|gb|EFA94950.1| DNA repair protein RecN [Lactobacillus jensenii 208-1]
 gi|297149320|gb|EFH29618.1| DNA repair protein RecN [Lactobacillus jensenii JV-V16]
          Length = 561

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F    +L++ F    T+ +G+ G GK+ +++A+S L    G R  S  ++ R
Sbjct: 2  LVELDIQNFAIIKNLKIKFKKNMTVLIGETGAGKSILIDALSLLL---GHRAQS--EMIR 56

Query: 67 IGSPSFFST 75
           G      T
Sbjct: 57 SGEKKAVVT 65


>gi|157325333|ref|YP_001468753.1| gp49 [Listeria phage B054]
 gi|66733338|gb|AAY53154.1| gp49 [Listeria phage B054]
          Length = 647

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          K+  L +  F+    L + F    T   G N  GKT IL+A ++L
Sbjct: 5  KLLKLQLENFKGIKELEIDFQDN-TSIYGANASGKTTILDAFTWL 48


>gi|16800824|ref|NP_471092.1| hypothetical protein lin1756 [Listeria innocua Clip11262]
 gi|16414243|emb|CAC96987.1| lin1756 [Listeria innocua Clip11262]
          Length = 660

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          K+  L +  F+    L + F    T   G N  GKT IL+A ++L
Sbjct: 19 KLLKLQLENFKGIKELEIDFQDN-TSIYGANASGKTTILDAFTWL 62


>gi|312214936|emb|CBX94890.1| similar to structural maintenance of chromosomes protein 1A
          [Leptosphaeria maculans]
          Length = 1283

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 6  KIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASY 61
          K+  L +  F++Y      L  D+  T  +G NG GK+N ++AISF+   +    R    
Sbjct: 3  KLVRLELCNFKSYSGRHTLLFGDSYFTSIIGPNGAGKSNSMDAISFVLGVKSATLRSDKL 62

Query: 62 ADVTRIG 68
           D+   G
Sbjct: 63 KDMVYRG 69


>gi|268593268|ref|ZP_06127489.1| DNA repair protein RecN [Providencia rettgeri DSM 1131]
 gi|291311164|gb|EFE51617.1| DNA repair protein RecN [Providencia rettgeri DSM 1131]
          Length = 553

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 60/381 (15%), Positives = 115/381 (30%), Gaps = 61/381 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F     L + F    T   G+ G GK+  ++A+      RG      A++ R
Sbjct: 2   LTQLTINNFAIVRELEIDFRNGMTAITGETGAGKSIAIDALGLCLGNRG-----EANMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + F+ V+  E  A+  I+ +  +       +      R    +N       
Sbjct: 57  PGALRADLCARFSLVDA-EMAANWLIEHQLDNQNECLLRRTISPDGRSRGFINGVSV--- 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                        + + R L  ++  I  +H               +LL +     S   
Sbjct: 113 ------------PLSQLRELGTLLIQIHGQHAH-------------QLLLDNTHQKSLLD 147

Query: 185 SIEAQ---MAELGVKINIARV--EMINALSSLIMEYVQKENFPHIKL-SLTGFLDGKFDQ 238
           +   Q   +A++           + +      + E   ++      L  L  FL  + + 
Sbjct: 148 AYSNQQELLAQMKKAWKTWHDSCQQLAVFQKEMQERESRQQLLEYHLKELNEFLPVQGE- 206

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVG 298
            F  + +EY +    G+ +      T I     D  V                    LV 
Sbjct: 207 -FEEIDQEYKQLANHGQFLSIGQTTTHILSENDDANVISLLNMAKNEL-------TDLVA 258

Query: 299 I--FLAHARLISNTTGFAPILLLDEISA-----HLDEDKRNALFRIVTDIGSQIFMTGTD 351
           +    +    +          + DEI        LD ++   LF +   I  QI +    
Sbjct: 259 LNPKFSELLDMLEEASIQVSEVSDEIKHYCDQYELDPNR---LFELEQRISKQISLARKH 315

Query: 352 KSVFDSLNETAKFMRISNHQA 372
               ++L E  + +     Q 
Sbjct: 316 HVSPEALPELFQQLLTEQEQI 336


>gi|104781356|ref|YP_607854.1| hypothetical protein PSEEN2231 [Pseudomonas entomophila L48]
 gi|95110343|emb|CAK15050.1| hypothetical protein PSEEN2231 [Pseudomonas entomophila L48]
          Length = 568

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K+  + I  FR   A   +      T  +G N  GKTN +  + +   G
Sbjct: 7  MKVTSVRIKNFRTITAEQVINIRDGCT-LIGPNNSGKTNAMLGVYYFFTG 55


>gi|254228201|ref|ZP_04921630.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262394060|ref|YP_003285914.1| pathogenesis related protein [Vibrio sp. Ex25]
 gi|151939274|gb|EDN58103.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|262337654|gb|ACY51449.1| pathogenesis related protein [Vibrio sp. Ex25]
          Length = 714

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +K+  + IS FR   S  L  + + ++ +G N  GKT++L  +  L+
Sbjct: 1  MKVARIEISNFRLLKSFTLDLEDELSLVIGKNNTGKTSVLACLDKLA 47


>gi|318606818|emb|CBY28316.1| DNA repair protein RecN [Yersinia enterocolitica subsp. palearctica
           Y11]
          Length = 553

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 83/277 (29%), Gaps = 34/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 2   LTQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAIDALGLCLGSRS-----DGSMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E           L        R    IN   V +  
Sbjct: 57  LGATRADICARFSLADTPSARQWLEENHLDDSNECLLRRAIGSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMI 160
           + EL +HL       +   +       +++ LD            +  + I  +  R + 
Sbjct: 117 LRELGQHLIQIHGQHAHQLLLR--PDHQKQLLDAYANQSVLLTEMKAAYQIWHQSCRALA 174

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKE 219
             ++    RN       +     +S   Q  E   + I   R+     L SL  + +Q  
Sbjct: 175 LHQQQSLERNARHELLQYQLKELNSFAPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL 234

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +       L+     K   +  A  +E    L +  +
Sbjct: 235 SDDEHNNILSQLYSAKHQLTELAGMDEQFNNLLNMLE 271


>gi|241760014|ref|ZP_04758112.1| conserved hypothetical protein [Neisseria flavescens SK114]
 gi|241319468|gb|EER55898.1| conserved hypothetical protein [Neisseria flavescens SK114]
          Length = 481

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 10/59 (16%)

Query: 5  IKIKFLNISEFR---------NYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + IK + +S F+         N+ +       +   IF+G+N  GK++I EAI+FL  G
Sbjct: 1  MFIKSICLSNFKGFIGDNHRINFKTPDGTTPGSGLNIFIGENNSGKSSIFEAINFLRNG 59


>gi|288572969|ref|ZP_06391326.1| putative ATP-binding protein [Dethiosulfovibrio peptidovorans DSM
          11002]
 gi|288568710|gb|EFC90267.1| putative ATP-binding protein [Dethiosulfovibrio peptidovorans DSM
          11002]
          Length = 348

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M   + I+ L +     +    + F +   + VG+NG GK+++L+A+  L
Sbjct: 1  MLKSMDIENLTV-----FTKANVSFSSGLNVIVGENGTGKSHLLKAVYSL 45


>gi|328948681|ref|YP_004366018.1| DNA repair protein RecN [Treponema succinifaciens DSM 2489]
 gi|328449005|gb|AEB14721.1| DNA repair protein RecN [Treponema succinifaciens DSM 2489]
          Length = 565

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 87/283 (30%), Gaps = 44/283 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I  F    S  + F+   T+  G+ G GK+ ++ +++FL  G+        +  R
Sbjct: 2   LEELDIKNFALIESAHIEFEKGFTVLSGETGAGKSILIGSLAFLLGGKS-----GTEQIR 56

Query: 67  IGSPSFFSTFARV------------EGMEGLADISIKLETRDDRSVRCLQINDVVIRV-- 112
            G      +                 G+E   +  I      D       I    +    
Sbjct: 57  AGCHEAQVSGVFFLENKETFLWLDEHGIESEENRIIIRRVIRDNGKSSAWIGGTPVTRVI 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR------MVFAIDPRHRRRMIDFERLM 166
           + E +  L           +      E RR+LD        V +    +  ++++  +++
Sbjct: 117 LSEFSAFLVDIHGQHEQQSLMKV--AEHRRYLDIYAGIVGEVSSFTSIY-NQLVEKRKIL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVK--------INIARVEMINALSSLIMEYVQK 218
              N   +E        +   ++++E  +K            R+     L + I E    
Sbjct: 174 ENLNSNESERNAKIDMLNFAVSEISEANLKAGEDEELEAEENRLSSFEKLYADIEEINSA 233

Query: 219 ENFPHI--------KLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
                         K+  T       D+S   L+       ++
Sbjct: 234 FEGEGENGIIFLLKKICGTASKALDSDKSLEPLENRLQSAFYE 276


>gi|326203425|ref|ZP_08193289.1| phage-like protein [Clostridium papyrosolvens DSM 2782]
 gi|325986245|gb|EGD47077.1| phage-like protein [Clostridium papyrosolvens DSM 2782]
          Length = 676

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           RI +K L I  F+      L  D ++    G+NG GKT I +A+++L   +  +      
Sbjct: 28  RITLKQLIIKNFKGLKEFTLNVDGKNADIYGNNGKGKTTIKDALNWLLFDKDSQNKKDFA 87

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             +    +  +       +E + D     E +  ++ R   +     + + E + H    
Sbjct: 88  -IKPQDEAGNAIHFLDTEVEAVMDCD-GKEVKLKKTFREKWV-KKKRQELQEFSGHETDY 144

Query: 124 WLVPSMDRIFSG 135
           W       +  G
Sbjct: 145 WC--DDVPLKKG 154


>gi|289679590|ref|ZP_06500480.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
          syringae FF5]
          Length = 64

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1  MRLKCIKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61 YADV 64
            DV
Sbjct: 61 MTDV 64


>gi|290476147|ref|YP_003469047.1| nucleoside triphosphate hydrolase domain-containing protein
           [Xenorhabdus bovienii SS-2004]
 gi|289175480|emb|CBJ82283.1| protein used in recombination and DNA repair with nucleoside
           triphosphate hydrolase domain [Xenorhabdus bovienii
           SS-2004]
          Length = 557

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 77/234 (32%), Gaps = 39/234 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+      RG      A++ R
Sbjct: 2   LTQLTISNFAIVRELEIDFRSGMTAITGETGAGKSIAIDALGLCLGNRG-----EANMVR 56

Query: 67  IGSPS-----------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-- 107
            G+                   +       E  +   +  ++     D   R   IN   
Sbjct: 57  AGATRTDICARFSLADAPSARKWLEAHQLDESRDDDNECLLRRTITADGRSRGF-INGTA 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           V +  + EL  HL       +   +       +RR LD      + +H     + ++  +
Sbjct: 116 VPLSQLRELGSHLIQIHGQHAHQLLLEN--RHQRRLLDIYAGEFERQH-----EMKQAYQ 168

Query: 168 G-RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
             R        F          Q      ++    ++ +N L+  + EY ++++
Sbjct: 169 QWRQSCQALARFQQQALERRSRQ------QLLEYHLKELNELAPQVGEYQEQDS 216


>gi|260943746|ref|XP_002616171.1| hypothetical protein CLUG_03412 [Clavispora lusitaniae ATCC 42720]
 gi|238849820|gb|EEQ39284.1| hypothetical protein CLUG_03412 [Clavispora lusitaniae ATCC 42720]
          Length = 1419

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 3   NRIKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            R+ I  L ++ F++YA ++    F+A  +  VG NG GK+N+++++ F+   R    R+
Sbjct: 192 PRLVINRLVLTNFKSYAGVQEIGPFNASFSAVVGPNGSGKSNVIDSMLFVFGFRASKMRQ 251

Query: 59  ASYADVTRIGSPSFFSTFARVE 80
              +++           + +V+
Sbjct: 252 GKLSELIHNSEGGQKLDYCQVD 273


>gi|222149126|ref|YP_002550083.1| DNA repair protein RecN [Agrobacterium vitis S4]
 gi|221736111|gb|ACM37074.1| DNA repair protein RecN [Agrobacterium vitis S4]
          Length = 557

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F A  ++  G+ G GK+ +L+++S    GRG        + R
Sbjct: 2   LVQLSIRDIVLIERLDLDFSAGLSVLTGETGAGKSILLDSLSLALGGRG-----DGSLVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
            G      T      +   A I ++    DD      +
Sbjct: 57  HGEDKGQVTAVFDVAISHPARIMLRENGIDDDGDLIFR 94


>gi|254507684|ref|ZP_05119816.1| putative RecF family protein [Vibrio parahaemolyticus 16]
 gi|219549381|gb|EED26374.1| putative RecF family protein [Vibrio parahaemolyticus 16]
          Length = 542

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 12/122 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + IS FR    L + FD   T  +G+N  GK+++L+A+S   P  G         
Sbjct: 1   MQLERIEISGFRGIKRLSIAFDE-LTTLIGENTWGKSSLLDALSVALPSEG--------- 50

Query: 65  T--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              +     F   ++          I + L + D   V   +   +    + +     RI
Sbjct: 51  IPYQFEMTDFHVDYSIAHPQSQHLQIVLSLVSTDKHEVNSGRYRKLKPVWIKDDQGKNRI 110

Query: 123 SW 124
            +
Sbjct: 111 IY 112


>gi|172051559|emb|CAQ34954.1| hypothetical protein [Photobacterium damselae subsp. piscicida]
          Length = 389

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          IK +++S F++     L  D++    +G NG GK+++L+  S++S  
Sbjct: 2  IKKISVSAFKSLVDFELNLDSKFNCIIGLNGAGKSSVLQLFSYVSAL 48


>gi|94971109|ref|YP_593157.1| ATP-dependent OLD family endonuclease [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553159|gb|ABF43083.1| ATP-dependent endonuclease of the OLD family [Candidatus Koribacter
           versatilis Ellin345]
          Length = 566

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 52/383 (13%), Positives = 114/383 (29%), Gaps = 61/383 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  + +  FR      + F  + T+ +G+N  GK+ ++EA+  +             +
Sbjct: 1   MQLHSVLVENFRGIRRAEVSFS-RDTVLIGENDSGKSRVIEALCLVLNSSS-------GI 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                P  F      E  +    I I +   +             I+ +           
Sbjct: 53  IPF-EPCHFCVPVE-EANQFSVPIRITITFAERHKGEWSSATYQPIQSL----------- 99

Query: 125 LVPSMDR---------IFSGLSMERRRFLDRMVFAI---DPRHRRRMIDFERLMRGRNRL 172
           L P   R           S  +  R RF            P     +     ++R    L
Sbjct: 100 LAPESSRQRELRLEVHAASADAKPRIRFFSSGGALAGSESPELLAWVRANNPIIRLEQGL 159

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           L +G  +         ++      ++     ++    +     +  E       +L    
Sbjct: 160 LNQGGRNGP---VRNKEIQSYSDLVDRHYAALVG--GASTNATLDLEAGFKAAQTLVALS 214

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
               D          A        ++ ++  TL    R          +   +  S    
Sbjct: 215 SQHLD----------ANARRTNWLLEEIAGSTLKLSSR----FANDSTSAPPSGNSY--- 257

Query: 293 KVVLVGIFLAHARLISNTTG--FAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           K+ L+    A  R  S   G    PI++ ++  AHL      +++ ++  +  Q  ++ T
Sbjct: 258 KIGLLLFVGALLRAHSQPFGPDAEPIVIFEDPEAHLHPLTLASVWSLIERMRWQTIVS-T 316

Query: 351 DKSVF---DSLNETAKFMRISNH 370
              V      L+   + +R+++ 
Sbjct: 317 HSGVLLTEAPLHSIRRLIRVNDE 339


>gi|307825341|ref|ZP_07655560.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]
 gi|307733516|gb|EFO04374.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]
          Length = 867

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 84/263 (31%), Gaps = 51/263 (19%)

Query: 147 MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA------QMAELGVKINIA 200
            +  +D +       FE+ +  R   +        W  + EA      Q+  L  K+N+ 
Sbjct: 444 EIAGMDAKLATDSRAFEQALTARQEAIKAAVISHQWDGTDEALPSPAAQLQALADKLNVE 503

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLS----------------------LTGFLDGKFDQ 238
             E +   S  +  Y  ++ F  +                         L   L     +
Sbjct: 504 -AETLEKASDEVARYALQKQFNELDARVRLSQVKDAVATAVSRLGHQAKLKQCLSAVDTR 562

Query: 239 SFCALKEEYA-----KKLFDGRKMD-----------SMSRRTLIGPHRSDLIVDYCDKAI 282
           S      E A     K+L D    +            +  R+  G     L ++      
Sbjct: 563 SISLKASELAAKAVSKELADALNREFKALGVGSLCVMLQTRSDKGKPLHKLKLELPQSRN 622

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
                S GEQ+ + +G FLA   L +   G    ++ D+  + LD  +R  + + +    
Sbjct: 623 PGEILSEGEQRAIAIGSFLAEVGLSNGKGG----IVFDDPVSSLDHRRRELVAKRLAAEA 678

Query: 343 S--QIFMTGTDKSVFDSLNETAK 363
           +  Q+ +   D      L+E AK
Sbjct: 679 AHRQVIVFTHDIYFLCILDEEAK 701


>gi|297195199|ref|ZP_06912597.1| DNA recombination and repair protein [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152683|gb|EFH31928.1| DNA recombination and repair protein [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 295

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 77/277 (27%), Gaps = 37/277 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +   +
Sbjct: 9   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADPAL 58

Query: 65  TRIGSPSFFS-----------TFARVEGMEGLADISIKLETR----DDRSVRCLQINDVV 109
            RIG+ S                 R E      D    L +R    + RS   L    V 
Sbjct: 59  VRIGAKSAVVEGRIRVSPDAPAALRAEEAGAELDDGTLLVSRTVSAEGRSRAHLGGRSVP 118

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI----DPRHRRRMIDFERL 165
           + ++ EL   L           +       +R  LDR           ++         +
Sbjct: 119 VGMLAELADELVAVHGQTDQQGLLR--PARQREALDRYAGDAVAVPHAKYAAAYRRLRAV 176

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH-- 223
                 L T     +     +   + E+      A  ++   L++        E      
Sbjct: 177 STELEELTTRARERAQEADLLRFGLNEIAAVEPRAGEDV--ELAAEAERLGHAEALASAA 234

Query: 224 --IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
                 L G  +         L     + L   R  D
Sbjct: 235 SVAHAGLAGNPEDPEVVDATTLVAGAGRALEAVRSHD 271


>gi|139436930|ref|ZP_01771090.1| Hypothetical protein COLAER_00063 [Collinsella aerofaciens ATCC
           25986]
 gi|133776577|gb|EBA40397.1| Hypothetical protein COLAER_00063 [Collinsella aerofaciens ATCC
           25986]
          Length = 542

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 63/206 (30%), Gaps = 25/206 (12%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + +++  + +          LV  A  T+  G+ G GKT +L A+  +   R     +
Sbjct: 1   MIDELQVSNIAL-----IREATLVPSAGLTVLTGETGAGKTALLSALKLILGER-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNK 118
            +   R G           +G       +++     +   R ++I+     +R + E   
Sbjct: 51  DSSTVREGEALASVEARLFDGPHDTEGFTVQRSLSAEGRSR-VKIDGRIASVRELSERVG 109

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            +          R+    S      +D             +  +    +       E   
Sbjct: 110 VMMDLCGQHEHQRLL--DSAHHVAMVDAWAG---RSALEALDAYRACFKASRAAAKEVR- 163

Query: 179 DSSWCSSIEAQMAELGVKINIARVEM 204
                   EA  A+ G ++  AR  +
Sbjct: 164 -----RVEEASRAQ-GSRVEEARFAL 183


>gi|150020379|ref|YP_001305733.1| hypothetical protein Tmel_0481 [Thermosipho melanesiensis BI429]
 gi|149792900|gb|ABR30348.1| conserved hypothetical protein [Thermosipho melanesiensis BI429]
          Length = 818

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 17/39 (43%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          + IK L I+ F    S  L F     +  G N  GKT I
Sbjct: 1  MLIKSLKINGFGKLKSKELKFKPGLNVIFGPNASGKTTI 39


>gi|118384729|ref|XP_001025504.1| SMC family, C-terminal domain containing protein [Tetrahymena
           thermophila]
 gi|89307271|gb|EAS05259.1| SMC family, C-terminal domain containing protein [Tetrahymena
           thermophila SB210]
          Length = 1296

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 95/282 (33%), Gaps = 23/282 (8%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + I F+ +  F+++    ++    Q T  +G NG GK+NI++A++F       R      
Sbjct: 1   MNIYFIEVENFKSFRGKHQIGPFTQMTGIIGPNGCGKSNIVDALTFAFNIENARNHHPIS 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-----DVVIRVVDELNK 118
                S         V   +    IS K      + +     N     D  +  + + N 
Sbjct: 61  SITQQSK-PDMCSVEVVLQDKRQKISFKKTQNRKKQITFYMNNNILNQDQYLEQLKKYNI 119

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDF-------------E 163
             +   L    D++      E    +++          +                    +
Sbjct: 120 GPQSFMLQGETDKLIKKSPEELSEIIEKACGSLQYKKEYDELNQQIKSINDETIKIISEQ 179

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN-ALSSLIMEYVQKENFP 222
           + ++  ++ L      +    S+  ++ ++ VKI  A    I+ ++   +      +N  
Sbjct: 180 KNLKKEDQKLRSISEQNEKYESLNEEIKQIEVKIEQANFFQIDSSILQEMKALSTTQNKL 239

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
             + +  G +  K  Q+   +K    ++    ++ + + ++ 
Sbjct: 240 DERKTEEGAIKQKIQQNNIKIKNLQKEQSKKEKEREQIKQQI 281


>gi|58336807|ref|YP_193392.1| hypothetical protein LBA0476 [Lactobacillus acidophilus NCFM]
 gi|58254124|gb|AAV42361.1| hypothetical protein LBA0476 [Lactobacillus acidophilus NCFM]
          Length = 582

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 11/75 (14%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI---------SFLSPGR 54
          + IK LNI ++R +     +      T   G NGVGK+ IL AI          + + G 
Sbjct: 1  MWIKDLNIKDYRAFQKETNIELSKHLTAIAGMNGVGKSTIL-AILTNVGELPKKYKTIGG 59

Query: 55 GFRRASYADVTRIGS 69
             R  ++DV    +
Sbjct: 60 SLFRGEFSDVIMYDA 74


>gi|319441290|ref|ZP_07990446.1| putative drug resistance ATP-binding protein [Corynebacterium
           variabile DSM 44702]
          Length = 557

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 11/160 (6%)

Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE-YAKKLFDGRK 256
           + ARV +++  +        ++      +++   +    + +     E+ Y + +    +
Sbjct: 82  HRARVGLLHQQAPFAPADTIEQALESA-VAVERQVARDLESAADPYDEQAYTEAIDLAER 140

Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
           +D       I    + L + +          S G+Q  + +   L              I
Sbjct: 141 LDIWETDARISATLAGLGLSHIPTDRPTGELSGGQQARLSLAWLL---------LNRPDI 191

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           LLLDE + HLD+     L  +++     +     D++  D
Sbjct: 192 LLLDEPTNHLDDAATTYLVSVLSAWRGPVLFASHDRAFLD 231



 Score = 36.8 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
           ++   D+   +   S G+Q+ V + + LA             +LLLDE   HL      A
Sbjct: 475 LIHPRDENRPLVELSLGQQRRVALAVLLA---------DPPEVLLLDEPDNHLSLSLVTA 525

Query: 334 LFRIVTDIGSQIFMTGTDK 352
           L   + +    + +   D+
Sbjct: 526 LEEAIPEYPGAVVVASHDR 544


>gi|312622615|ref|YP_004024228.1| SMC domain-containing protein [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312203082|gb|ADQ46409.1| SMC domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 857

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 93/292 (31%), Gaps = 47/292 (16%)

Query: 5   IKIKFLNISEFRNYASL--RLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFR--RA 59
           +K  FL I  F++Y      + F   +    +G NG GK++I EAI++   G   R    
Sbjct: 1   MKPLFLRIENFKSYKDSQNEIDFSNIKVACIIGKNGNGKSSIAEAIAWALFGEFERLQTG 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-------------- 105
               V      +  S + +VE    L     K+  R DR  +                  
Sbjct: 61  KRGKVAETEYINSHSDYMQVEFEFELNKTIYKVVRRLDRRGKKYLSLFVRKADSLIPINE 120

Query: 106 --NDVVIRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFLDRMVFAIDPRH 155
             N      +  +       +L              +      +RR  L +++       
Sbjct: 121 ATNTQTQEKLQNILGIDFNVFLHSTYLSQKRTEDFLL--SSPEDRREVLAKIL------- 171

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN---IARVEMINALSSLI 212
              +  ++R+    N L  E   +      I+ +  E   KI     +   ++  L    
Sbjct: 172 --NLSIYDRI----NELAKEKRREIKVLLDIKNREIEEENKILSEEESIKSLVADLEKKR 225

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
                + N    +L+       + +Q    L ++ ++ +   RK + +  R 
Sbjct: 226 TAIEAELNGLRNELNALISKKSEIEQKLSLLSQKKSEMIEHQRKAEEIRYRI 277


>gi|190341585|gb|ACE74869.1| RecN [Leclercia adecarboxylata ATCC 23216]
 gi|190341587|gb|ACE74870.1| RecN [Leclercia adecarboxylata]
          Length = 553

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 71/207 (34%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F++  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNSGMTAITGETGAGKSIAIDALGLCLGGR-----ADGDMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              P+      + +  +G   +  ++   D RS   +    V +  
Sbjct: 57  AGASRADLCARFSLKDTPAALRWLEQNQLEDGRECLLRRVLNSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLMR 167
           + EL + L       +  ++      +++  LD       +  +   H R+     R + 
Sbjct: 117 LRELGQLLIQIHGQHAHQQLIK--PDQQKSLLDGYAGESDLMQLMAAHYRQWHQSCRELA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
              +   E    +   +    ++ E  
Sbjct: 175 LHQQQSQERAARAELLAYQLKELNEFS 201


>gi|221638527|ref|YP_002524789.1| DNA repair protein RecN [Rhodobacter sphaeroides KD131]
 gi|221159308|gb|ACM00288.1| DNA repair protein RecN [Rhodobacter sphaeroides KD131]
          Length = 546

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2  LRSLDIRDMLIIDRLSLAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67 IGSPSFFSTFA 77
           G+     T  
Sbjct: 57 AGADKGEVTAV 67


>gi|222529134|ref|YP_002573016.1| SMC domain-containing protein [Caldicellulosiruptor bescii DSM
           6725]
 gi|222455981|gb|ACM60243.1| SMC domain protein [Caldicellulosiruptor bescii DSM 6725]
          Length = 857

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 93/292 (31%), Gaps = 47/292 (16%)

Query: 5   IKIKFLNISEFRNYASL--RLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFR--RA 59
           +K  FL I  F++Y      + F   +    +G NG GK++I EAI++   G   R    
Sbjct: 1   MKPLFLRIENFKSYKDSQNEIDFSNIKVACIIGKNGNGKSSIAEAIAWALFGEFERLQTG 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-------------- 105
               +      +  S + +VE    L     K+  R DR  +                  
Sbjct: 61  KRGKIAETEYINSHSDYMQVEFEFELNKTIYKVVRRLDRRGKKYLSLFVRKADSLIPINE 120

Query: 106 --NDVVIRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFLDRMVFAIDPRH 155
             N      +  +       +L              +      +RR  L +++       
Sbjct: 121 ATNTQTQEKLQNILGIDFNVFLHSTYLSQKRTEDFLL--SSPEDRREVLAKIL------- 171

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN---IARVEMINALSSLI 212
              +  ++R+    N L  E   +      I+ +  E   KI     +   ++  L    
Sbjct: 172 --NLSIYDRI----NELAKEKRREIKVLLDIKNREIEEENKILSEEESIKSLVADLEKKR 225

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
                + N    +L+       + +Q    L ++ ++ +   RK + +  R 
Sbjct: 226 TAIEAELNGLRNELNALISKKSEIEQKLSLLSQKKSEMIEHQRKAEEIRYRI 277


>gi|260829711|ref|XP_002609805.1| hypothetical protein BRAFLDRAFT_219461 [Branchiostoma floridae]
 gi|229295167|gb|EEN65815.1| hypothetical protein BRAFLDRAFT_219461 [Branchiostoma floridae]
          Length = 1096

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/218 (19%), Positives = 75/218 (34%), Gaps = 18/218 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
            I  + +  F +Y         +  + +  N  GK+ +  A+  L  G       R    
Sbjct: 44  AIVRMKLINFMSYNECEFFPGCRLNVIIAPNHTGKSAMTCAMC-LGLGGSTKIVDRGKEV 102

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRVVDELNKHL 120
           ++  + G  + +     + G E   ++ IK +  RD+RS   L       + V E     
Sbjct: 103 SEYVKHGKETGY-IELELHGGEDEDNVVIKRQIHRDNRSDWSLNGQHATQKKVLETVASF 161

Query: 121 RISW-----LVPSMDRIFSGLSMERRRFLDRMVFAI-DPRHRRR---MIDFERLMRGRNR 171
            I        +P   R+     M+R + L+    A+  P+       + DF R  R  + 
Sbjct: 162 NIQINNLCQFLPQH-RVEDFAKMDRYQLLENTEKAVGSPQMYEDHCQLKDFRRDERQLSN 220

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209
            L E            A++ EL VK    R   +  + 
Sbjct: 221 KLEEHRTHLERLKERNARL-ELDVKRYRERERHLAKIQ 257


>gi|307325241|ref|ZP_07604444.1| SMC domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306889045|gb|EFN20028.1| SMC domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 458

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 5  IKIKFLNISEFRNY---ASLRLVFD------AQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +K L +   R++     + L         A  T+  G NG GKT +L A++    G
Sbjct: 1  MYLKNLRLRNIRSFHGARDVDLDLTRPDGSYAGWTVLAGRNGSGKTTLLRAVALTISG 58


>gi|300765830|ref|ZP_07075804.1| hypothetical protein LMHG_12470 [Listeria monocytogenes FSL
          N1-017]
 gi|300513407|gb|EFK40480.1| hypothetical protein LMHG_12470 [Listeria monocytogenes FSL
          N1-017]
          Length = 647

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          K+  L +  F+    L + F    T   G N  GKT IL+A ++L
Sbjct: 5  KLLKLQLENFKGIKELEIDFQDN-TSIYGANASGKTTILDAFTWL 48


>gi|295699582|ref|YP_003607475.1| SMC domain protein [Burkholderia sp. CCGE1002]
 gi|295438795|gb|ADG17964.1| SMC domain protein [Burkholderia sp. CCGE1002]
          Length = 873

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 75/203 (36%), Gaps = 17/203 (8%)

Query: 167 RGRNRLLTEGYFDSSW-CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           R    L      +     + + +Q+  +G      R+  + A          + +     
Sbjct: 666 RASAELARNEQHERQLRIAELRSQLETMGASGLGERLAALEAQVEQATRRKDELSLRASA 725

Query: 226 LSL-TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA--- 281
           LSL    L  + D +   L+    ++L    K         +G    DLI    D+    
Sbjct: 726 LSLLDEVLVDERDAALAQLRAPLTERLGHYLKRIFPQSSLALG---DDLIPAMLDRDGRA 782

Query: 282 ---ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
                ++ G+  +   + +   LA+A L+   +G   +L+LD+ + H D  +R+AL R++
Sbjct: 783 ELLDALSFGTREQ---LGILTRLAYADLL-QASGRPTLLMLDDAAVHTDAARRDALKRVL 838

Query: 339 --TDIGSQIFMTGTDKSVFDSLN 359
                  QI +      ++D L 
Sbjct: 839 IDAATRHQILVFTCHPELWDDLG 861



 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +K++ + I EFR +    +         +FVG N  GK+ I EA+  +   R ++ +   
Sbjct: 1  MKLQRIAIQEFRQFGGQIVIDDLQPGLNLFVGPNEAGKSTIAEAVRTVFLER-YKASHLK 59

Query: 63 DVTRIG 68
          D+   G
Sbjct: 60 DLLPWG 65


>gi|190149294|ref|YP_001967819.1| DNA repair protein RecN [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307262607|ref|ZP_07544237.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
 gi|189914425|gb|ACE60677.1| DNA repair protein RecN [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306872030|gb|EFN03744.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 13
           str. N273]
          Length = 557

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 85/275 (30%), Gaps = 37/275 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L ++ F     L L  +   ++  G+ G GK+  ++A+S     R       + + R
Sbjct: 2   LTHLTVNNFAIVRHLTLELNEGMSVITGETGAGKSIAIDALSLCLGYRS-----ESSMIR 56

Query: 67  IGSP----------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VV 109
            G+                   +     +   +   +  ++     +   +    N  + 
Sbjct: 57  HGADKADITATFSMQATSPAYLWLKQHELLDEDNPQECILRRMINQEGRSKAFVNNRPLP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMR 167
           I  + EL ++L       +   +    S  +   LD    +  +      +   +++L +
Sbjct: 117 ISQLRELGQYLIHLNGQHAPQLLLK--SEYQLEVLDNYAGIHNLLNEMSSQYQRWKKLHQ 174

Query: 168 G-RN--RLLTEGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSSLIMEYV 216
             +N  +   E             ++ E  +K           +R+    AL++L  E  
Sbjct: 175 QVKNFRQQCQENEAREQLLQYQVDELDEFAIKQGEFEEMEETHSRLSNSEALTALSQEVT 234

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
              +   + +    +   +  +    +   Y   L
Sbjct: 235 DLLSESELNVDSMLYKAIRHLEDLVEVDSRYQSAL 269


>gi|84514557|ref|ZP_01001921.1| SMC protein [Loktanella vestfoldensis SKA53]
 gi|84511608|gb|EAQ08061.1| SMC protein [Loktanella vestfoldensis SKA53]
          Length = 1151

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+ ++         R   
Sbjct: 1   MRFSKLRLNGFKSFVDPTDLIIADGLTGVVGPNGCGKSNLLEALRWVMGEHRASAMRGGG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G+      +F      ++  E LA         +++  R  R +    ++   
Sbjct: 61  MEDVIFAGAATRPARNFAEVSLIIDNAERLAPAAFNDADQLEIVRRITRDAGSAYKVGTK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + +     RRR L+
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGMIAELINAKPKSRRRILE 165


>gi|325962897|ref|YP_004240803.1| DNA replication and repair protein RecN [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468984|gb|ADX72669.1| DNA replication and repair protein RecN [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 579

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 70/217 (32%), Gaps = 33/217 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L +          L      ++  G+ G GKT ++ A+  L   R      
Sbjct: 1   MLEELRIRDLGV-----ITDATLPLGPGLSVVTGETGAGKTMVVTAVGLLLGARS----- 50

Query: 61  YADVTRIGSPSFFSTF------------------ARVEGMEGLADISIKLETRDDRSVRC 102
            A   R G+ S  +                    A  E  +G A++ +      D   R 
Sbjct: 51  DAGAVRSGAKSATAEAVLKLDAGHPAIARALDAGAEAEEFDGGAELILARRLGSDGRSRA 110

Query: 103 LQIND-VVIRVVDELNKHLRISWLVPSMDRIFSGLSMER---RRFLDRMVFAIDPRHRRR 158
                   + V+ E+ + L +        R+  G + +R    +F    +      ++  
Sbjct: 111 FLGGRAAPVGVLAEIGETLVVVHGQSDQIRL-KGAAAQRGALDKFAGEALAGPLTAYQDL 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
              ++  +     L +          S+++ +AE+  
Sbjct: 170 YSRWKSSLAELEELRSAARDRLREAESLQSALAEIDE 206


>gi|320324204|gb|EFW80284.1| hypothetical protein PsgB076_13562 [Pseudomonas syringae pv.
          glycinea str. B076]
 gi|320328634|gb|EFW84635.1| hypothetical protein PsgRace4_18048 [Pseudomonas syringae pv.
          glycinea str. race 4]
 gi|330882360|gb|EGH16509.1| hypothetical protein Pgy4_26015 [Pseudomonas syringae pv.
          glycinea str. race 4]
          Length = 639

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61
          +K+  L IS F+++      + F+   T  +G NG GKT +L+A+    +   G RR   
Sbjct: 1  MKLCSLRISNFQSFGPQPTPITFED-ITYLLGPNGAGKTAVLQALCRLFAFEPGLRRVRS 59

Query: 62 AD 63
          +D
Sbjct: 60 SD 61


>gi|319945380|ref|ZP_08019641.1| hypothetical protein HMPREF0551_2489 [Lautropia mirabilis ATCC
          51599]
 gi|319741373|gb|EFV93799.1| hypothetical protein HMPREF0551_2489 [Lautropia mirabilis ATCC
          51599]
          Length = 400

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          M+  + ++ + +  +++     +      T  VG NG GK+N L+A+  +S
Sbjct: 1  MSIPVFLQRVILQNYKSIGHCDVRLHP-LTWLVGGNGAGKSNFLDALQLVS 50


>gi|303250504|ref|ZP_07336701.1| DNA repair protein RecN [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307251546|ref|ZP_07533453.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302650492|gb|EFL80651.1| DNA repair protein RecN [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306861010|gb|EFM93016.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 557

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 85/275 (30%), Gaps = 37/275 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L ++ F     L L  +   ++  G+ G GK+  ++A+S     R       + + R
Sbjct: 2   LTHLTVNNFAIVRHLTLELNEGMSVITGETGAGKSIAIDALSLCLGYRS-----ESSMIR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQIND-VV 109
            G+     T                   +   +   +  ++     +   +    N  + 
Sbjct: 57  HGADKADITATFSMQPTSPAYSWLQQHELLDEDNPQECILRRMINQEGRSKAFVNNRPLP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMR 167
           I  + EL ++L       +   +    S  +   LD    +  +      +   +++L +
Sbjct: 117 ISQLRELGQYLIHLNGQHAPQLLLK--SEYQLEVLDNYAGIHNLLNEMSSQYQRWKKLHQ 174

Query: 168 G-RN--RLLTEGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSSLIMEYV 216
             +N  +   E             ++ E  +K           +R+    AL++L  E  
Sbjct: 175 QVKNFRQQCQENEARKQLLQYQVDELDEFAIKQGEFEEMEETHSRLSNSEALTALSQEVT 234

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
              +   + +    +   +  +    +   Y   L
Sbjct: 235 DLLSESELNVDSMLYKAIRHLEDLVEVDSRYQSAL 269


>gi|282864471|ref|ZP_06273527.1| DNA repair protein RecN [Streptomyces sp. ACTE]
 gi|282560958|gb|EFB66504.1| DNA repair protein RecN [Streptomyces sp. ACTE]
          Length = 583

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 65/210 (30%), Gaps = 31/210 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +   +
Sbjct: 9   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADPAL 58

Query: 65  TRIGSPSFFS-----------TFARVEGMEGLADISIKLETR----DDRSVRCLQINDVV 109
            R+G+ +                 R E   G  +    + +R    + RS   L    V 
Sbjct: 59  VRVGAKAAVVEGRITVAPGDAAALRAEEAGGEIEDGALIVSRTVSAEGRSRAHLGGRSVP 118

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERL 165
           + V+ EL   L           +       +R+ LDR     V      +         +
Sbjct: 119 VGVLTELADELVAVHGQTDQQGLLK--PARQRQALDRYAGDGVSVPLAAYTAAYRRLRAV 176

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
           +   + L       +     +   + E+  
Sbjct: 177 VTELDELTVRARERAQEADLLRFGLDEVAA 206


>gi|288573749|ref|ZP_06392106.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans
          DSM 11002]
 gi|288569490|gb|EFC91047.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans
          DSM 11002]
          Length = 70

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          IK ++I +F++   + L      T  +G NG GK+ +L+AI F+ 
Sbjct: 2  IKSISIKKFKSLVDMELELSD-FTCLIGVNGSGKSTVLQAIDFIG 45


>gi|257413969|ref|ZP_04744813.2| putative RecF/RecN/SMC N domain protein [Roseburia intestinalis
          L1-82]
 gi|257201668|gb|EEU99952.1| putative RecF/RecN/SMC N domain protein [Roseburia intestinalis
          L1-82]
          Length = 805

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 4  RIKIKFLNISEFRNYASLRL-VFDAQ-HTIFVGDNGVGKTNILEAISFLSPG 53
          R+ IK + I  FR ++  ++  F+ +   +    NG GKT++++AI +   G
Sbjct: 5  RMNIKKIKIINFRGFSEEKIFEFEGKPFVMLTAPNGKGKTSVIDAIEWCMTG 56


>gi|221487281|gb|EEE25513.1| structural maintenance of chromosomes 6 smc6, putative [Toxoplasma
           gondii GT1]
          Length = 1966

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
           KI  + + +F N+  L     +   +  G NG GK+ +  AI F      
Sbjct: 562 KITRVELRDFLNHRHLTWTPGSHCNVVTGMNGSGKSALARAILFCCGAES 611


>gi|195495495|ref|XP_002095291.1| GE19773 [Drosophila yakuba]
 gi|194181392|gb|EDW95003.1| GE19773 [Drosophila yakuba]
          Length = 993

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I  +   +F +Y+ +         +  G NG GK+ I+ AI  L  G       R AS 
Sbjct: 15  RIHSVYCKDFVSYSEITFHPKHYLNVLTGPNGSGKSTIVSAI-ILGLGGEPILLDRSASV 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD  +    S  +   RV G              +        +ND      + L+
Sbjct: 74  ADYIQSNKTSA-TIIVRVYGR-TPNTTETFRRVINSNGSSIFSVNDKDTSKKNFLS 127


>gi|156743486|ref|YP_001433615.1| hypothetical protein Rcas_3548 [Roseiflexus castenholzii DSM 13941]
 gi|156234814|gb|ABU59597.1| conserved hypothetical protein [Roseiflexus castenholzii DSM 13941]
          Length = 368

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD--V 64
           IK +++  F+ +    +      TI  G N  GK+++++A+  L   +  +R +  D  +
Sbjct: 2   IKTIHLHNFKCFGDQSIHCAP-LTILTGANATGKSSVIQALLLLR--QSHQRDTLRDGVL 58

Query: 65  TRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVV---DELNKHL 120
              GS +   T   +        D+SI++E  +D   + +       + V     L  + 
Sbjct: 59  LLNGSLATLGTVTDIFYQNAQDNDLSIEIEASEDIRFKFMFERGEPTQRVLRGQSLQHYE 118

Query: 121 RISWLVPSMDRIFSGLSMERRRF 143
            I+   P  + + +     R  F
Sbjct: 119 AINLFYPQFNYLSAERLGPRTIF 141


>gi|307304262|ref|ZP_07584014.1| chromosome segregation protein SMC [Sinorhizobium meliloti BL225C]
 gi|307320567|ref|ZP_07599982.1| chromosome segregation protein SMC [Sinorhizobium meliloti AK83]
 gi|306893843|gb|EFN24614.1| chromosome segregation protein SMC [Sinorhizobium meliloti AK83]
 gi|306902730|gb|EFN33323.1| chromosome segregation protein SMC [Sinorhizobium meliloti BL225C]
          Length = 1153

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFTRLRLLGFKSFVEPTEFVIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  +  A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVGLYLDNSDRTAPAAFNDSDEIQVTRRIEREQGSVYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        + +     RR+ L+
Sbjct: 121 EARAKDVQLLFADASTGARSPSMVGQGRIGELIAAKPQARRQLLE 165


>gi|307249224|ref|ZP_07531221.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|307256046|ref|ZP_07537834.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
 gi|306858748|gb|EFM90807.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306865468|gb|EFM97363.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 10
           str. D13039]
          Length = 557

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 85/275 (30%), Gaps = 37/275 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L ++ F     L L  +   ++  G+ G GK+  ++A+S     R       + + R
Sbjct: 2   LTHLTVNNFAIVRHLTLELNEGMSVITGETGAGKSIAIDALSLCLGYRS-----ESSMIR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQIND-VV 109
            G+     T                   +   +   +  ++     +   +    N  + 
Sbjct: 57  HGADKADITATFSMQPTSPAYSWLQQHELLDEDNPQECILRRMINQEGRSKAFVNNRPLP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMR 167
           I  + EL ++L       +   +    S  +   LD    +  +      +   +++L +
Sbjct: 117 ISQLRELGQYLIHLNGQHAPQLLLK--SEYQLEVLDNYAGIHNLLNEMSSQYQRWKKLHQ 174

Query: 168 G-RN--RLLTEGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSSLIMEYV 216
             +N  +   E             ++ E  +K           +R+    AL++L  E  
Sbjct: 175 QVKNFRQQCQENEARKQLLQYQVDELDEFAIKQGEFEEMEETHSRLSNSEALTALSQEVT 234

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
              +   + +    +   +  +    +   Y   L
Sbjct: 235 DLLSESELNVDSMLYKAIRHLEDLVEVDSRYQSAL 269


>gi|291319965|ref|YP_003515223.1| hypothetical protein MAGa0300 [Mycoplasma agalactiae]
 gi|290752294|emb|CBH40265.1| Hypothetical ABC transporter, ATP binding protein [Mycoplasma
           agalactiae]
          Length = 280

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 17/128 (13%)

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           F ++  A +  Y+  L  G     +  R        +      D + + A+ S+G++K +
Sbjct: 64  FPKNLSATEYLYSLALMSGVDKKVIKDRINYI--MDNYGFHVPDMSKSPAYMSSGQKKSI 121

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDK 352
           ++         I        IL+LDE +A+LD   R  LF  +  +   G  IF++    
Sbjct: 122 ML---------IQALINDPEILILDEPAANLDPSSRIKLFNTLKQLHLEGKTIFISS--- 169

Query: 353 SVFDSLNE 360
            + D L +
Sbjct: 170 HILDELEK 177


>gi|271499341|ref|YP_003332366.1| DNA repair protein RecN [Dickeya dadantii Ech586]
 gi|270342896|gb|ACZ75661.1| DNA repair protein RecN [Dickeya dadantii Ech586]
          Length = 553

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 77/247 (31%), Gaps = 36/247 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F A  ++  G+ G GK+  ++A+      R       A++ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQAGMSVITGETGAGKSIAIDALGLCLGNRS-----DANMVR 56

Query: 67  IGSPSFFS-------------TFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  PGATRADICARFSLTDTPAALRWLEHNQLDDNNECLLRRVISADGRSRAF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRM 159
            + EL +HL       +   +       +R  LD            R ++    +  R +
Sbjct: 116 QLRELGQHLIQLHGQHAHQLLLK--PEHQRHLLDAYADESQLLGAMRQMWQQWHQSCREL 173

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQK 218
              ++    R        +     +    Q  E   + +   R+     L SL  + +Q 
Sbjct: 174 AQHQQATIEREARRELLQYQLKELNEFTPQPGEYEQIDVEYKRLANSGQLMSLSQQTLQI 233

Query: 219 ENFPHIK 225
            +    +
Sbjct: 234 LSEGEEQ 240


>gi|165923882|ref|ZP_02219714.1| chromosome segregation protein SMC [Coxiella burnetii RSA 334]
 gi|165916667|gb|EDR35271.1| chromosome segregation protein SMC [Coxiella burnetii RSA 334]
          Length = 1169

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + ++ F+ +    L+         VG NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1   MYLKTIKLAGFKTFVDPTLIPIRGSMNAIVGPNGCGKSNVVDAVRWVIGETSAKQLRGQS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQIND 107
            +DV   G+ S            F ++  R+ G      +I+I+ E   D       IN 
Sbjct: 61  MSDVIFNGTTSRKPVGKASIELHFDNSEGRIGGEYAKYGEIAIRREVERDGQSNYF-ING 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 AHVRRRD 126


>gi|148981700|ref|ZP_01816499.1| predicted ATP-dependent endonuclease [Vibrionales bacterium SWAT-3]
 gi|145960772|gb|EDK26109.1| predicted ATP-dependent endonuclease [Vibrionales bacterium SWAT-3]
          Length = 573

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + IS FR    + L FD   T  +G+N  GK+++L+A+S + P       S    
Sbjct: 1   MQLERIEISGFRGIKRMSLAFDE-LTTLIGENTWGKSSLLDALSVVLP-------SDGVP 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDELN 117
                  F   ++          I + L+  D   +   +      I V DE  
Sbjct: 53  YHFEMTDFHVDYSVSHPQSQHLQIVLSLKANDKSELNAGRYRKLKPIWVQDEFG 106


>gi|189091834|ref|XP_001929750.1| hypothetical protein [Podospora anserina S mat+]
 gi|27803028|emb|CAD60731.1| unnamed protein product [Podospora anserina]
 gi|188219270|emb|CAP49250.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1191

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +  L           VG+NG GK+ +L AI+    G+     R  S   
Sbjct: 146 LEQVICINFMCHTRLNCELGPLLNFVVGENGSGKSAVLTAITLCLGGKASSTNRGGSLKS 205

Query: 64  VTRIGSPSFF 73
             + G     
Sbjct: 206 FIKEGEDKAI 215


>gi|15964684|ref|NP_385037.1| putative chromosome partition protein [Sinorhizobium meliloti 1021]
 gi|15073862|emb|CAC45503.1| Putative chromosome partition protein [Sinorhizobium meliloti 1021]
          Length = 1156

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 4   MKFTRLRLLGFKSFVEPTEFVIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 63

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  +  A         I++  R +R      +IN  
Sbjct: 64  MDDVIFSGSGNRPARNTAEVGLYLDNSDRTAPAAFNDSDEIQVTRRIEREQGSVYRINGK 123

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        + +     RR+ L+
Sbjct: 124 EARAKDVQLLFADASTGARSPSMVGQGRIGELIAAKPQARRQLLE 168


>gi|53729112|ref|ZP_00134076.2| COG0497: ATPase involved in DNA repair [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207513|ref|YP_001052738.1| DNA repair protein RecN [Actinobacillus pleuropneumoniae L20]
 gi|126096305|gb|ABN73133.1| DNA repair protein RecN [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 557

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 85/275 (30%), Gaps = 37/275 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L ++ F     L L  +   ++  G+ G GK+  ++A+S     R       + + R
Sbjct: 2   LTHLTVNNFAIVRHLTLELNEGMSVITGETGAGKSIAIDALSLCLGYRS-----ESSMIR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQIND-VV 109
            G+     T                   +   +   +  ++     +   +    N  + 
Sbjct: 57  HGADKADITATFSMQPTSPAYSWLQQHELLDEDNPQECILRRMINQEGRSKAFVNNRPLP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMR 167
           I  + EL ++L       +   +    S  +   LD    +  +      +   +++L +
Sbjct: 117 ISQLRELGQYLIHLNGQHAPQLLLK--SEYQLEVLDNYAGIHNLLNEMSSQYQRWKKLHQ 174

Query: 168 G-RN--RLLTEGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSSLIMEYV 216
             +N  +   E             ++ E  +K           +R+    AL++L  E  
Sbjct: 175 QVKNFRQQCQENEARKQLLQYQVDELDEFAIKQGEFEEMEETHSRLSNSEALTALSQEVT 234

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
              +   + +    +   +  +    +   Y   L
Sbjct: 235 DLLSESELNVDSMLYKAIRHLEDLVEVDSRYQSAL 269


>gi|303251847|ref|ZP_07338018.1| DNA repair protein [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|307249148|ref|ZP_07531155.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307260476|ref|ZP_07542171.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
 gi|302649277|gb|EFL79462.1| DNA repair protein [Actinobacillus pleuropneumoniae serovar 2 str.
           4226]
 gi|306854436|gb|EFM86632.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306869879|gb|EFN01661.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 12
           str. 1096]
          Length = 557

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 85/275 (30%), Gaps = 37/275 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L ++ F     L L  +   ++  G+ G GK+  ++A+S     R       + + R
Sbjct: 2   LTHLTVNNFAIVRHLTLELNEGMSVITGETGAGKSIAIDALSLCLGYRS-----ESSMIR 56

Query: 67  IGSP----------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VV 109
            G+                   +     +   +   +  ++     +   +    N  + 
Sbjct: 57  HGADKADITATFSMQATSPAYLWLKQHELLDEDNPQECILRRMINQEGRSKAFVNNRPLP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMR 167
           I  + EL ++L       +   +    S  +   LD    +  +      +   +++L +
Sbjct: 117 ISQLRELGQYLIHLNGQHAPQLLLK--SEYQLEVLDNYAGIHNLLNEMSSQYQRWKKLHQ 174

Query: 168 G-RN--RLLTEGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSSLIMEYV 216
             +N  +   E             ++ E  +K           +R+    AL++L  E  
Sbjct: 175 QVKNFRQQCQENEAREQLLQYQVDELDEFAIKQGEFEEMEETHSRLSNSEALTALSQEVT 234

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
              +   + +    +   +  +    +   Y   L
Sbjct: 235 DLLSESELNVDSMLYKAIRHLEDLVEVDSRYQSAL 269


>gi|218690006|ref|YP_002398218.1| hypothetical protein ECED1_2279 [Escherichia coli ED1a]
 gi|330000676|ref|ZP_08303789.1| hypothetical protein HMPREF9538_01449 [Klebsiella sp. MS 92-3]
 gi|218427570|emb|CAR08466.2| conserved hypothetical protein [Escherichia coli ED1a]
 gi|328537912|gb|EGF64098.1| hypothetical protein HMPREF9538_01449 [Klebsiella sp. MS 92-3]
          Length = 594

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 83/277 (29%), Gaps = 42/277 (15%)

Query: 5   IKIKFLNISE---FRN-------YASLRLVFDAQHT--------IFVGDNGVGKTNILEA 46
           +K+  L IS+   FR+       Y         +          +  G NG GK+N+LEA
Sbjct: 1   MKLLRLKISDPSGFRSLPCGFEHYFRTEWDLQEELNQHEGFAPFVCAGPNGSGKSNLLEA 60

Query: 47  IS-------FLSPGRGF----RRASYADV--TRIGSPSFFSTFARVEGMEGLADISIKLE 93
           ++        L   R F     +++  D+                     G     + + 
Sbjct: 61  LAAIFFQLEILRVRRSFLPEVLQSTDHDLSPISFELDYLIRVPEEFRISGGQEWAKVSVW 120

Query: 94  TRDDRSVRCLQINDVV-IRVVDELNKHLRISWLVPSMDRIFSGLSME--RRRFLDRMVFA 150
             +  SVR   +N        DE+ K      L+P     +S    E     F       
Sbjct: 121 KNNGESVRFHWVNQSDFDTNADEVFKGSHADILLPQYVLGYSSGENEILSLPFFKMRFVQ 180

Query: 151 IDPRHRRRMID---FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM-IN 206
            D  +   +     +      R   L  G+  +    ++   + +    +   R ++ I 
Sbjct: 181 FD-EYWNALTRQLSYSGHPESRLAYLDSGFSQAILLCNL---LFQNETALQPFREDVGIE 236

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           AL    +   +       +L+     D    QS   +
Sbjct: 237 ALREFRIIIRRSIPLAPEQLTSFASEDKNQHQSLDDI 273


>gi|238544540|dbj|BAH60892.1| putative endonuclease [Desulfotignum balticum]
          Length = 552

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 12/69 (17%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--------- 55
          +K   ++I  FR+     +       + VG N  GKT +++AI     G+G         
Sbjct: 1  MKAVEISIHNFRSICDTTISLSD-CGMLVGANNAGKTTVIDAIRAF-YGKGIKFEKGRDF 58

Query: 56 -FRRASYAD 63
            R A   +
Sbjct: 59 PHRGAIDNE 67


>gi|237829819|ref|XP_002364207.1| chromosome segregation protein, putative [Toxoplasma gondii ME49]
 gi|211961871|gb|EEA97066.1| chromosome segregation protein, putative [Toxoplasma gondii ME49]
 gi|221507071|gb|EEE32675.1| structural maintenance of chromosomes 6, SMC6, putative [Toxoplasma
           gondii VEG]
          Length = 1967

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
           KI  + + +F N+  L     +   +  G NG GK+ +  AI F      
Sbjct: 563 KITRVELRDFLNHRHLTWTPGSHCNVVTGMNGSGKSALARAILFCCGAES 612


>gi|167516574|ref|XP_001742628.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779252|gb|EDQ92866.1| predicted protein [Monosiga brevicollis MX1]
          Length = 294

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 6  KIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          K+  L I   R++       L F    T+ VG+NG GKT I+EA+ F++ G
Sbjct: 3  KVNKLLIQGIRSFSPDQHEVLEFFP-ITVVVGENGSGKTTIVEALRFITTG 52


>gi|50119783|ref|YP_048950.1| recombination and repair protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610309|emb|CAG73753.1| DNA repair protein [Pectobacterium atrosepticum SCRI1043]
          Length = 553

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 88/270 (32%), Gaps = 44/270 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  ++  G+ G GK+  ++A+      R       A + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMSVITGETGAGKSIAIDALGLCLGNRS-----DASMVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  PGAARADICARFALTDTPMARQWLEENQLDDSNECLLRRVISADGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL +HL       +   +       ++  LD   +A +P+    M           R
Sbjct: 116 QLRELGQHLIQVHGQHAHQLLLR--PDHQKHLLD--AYADEPKLLVAMQQVWHQWHQSCR 171

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTG 230
            L              AQ+ +  ++   AR E++      + E+  Q   + HI +    
Sbjct: 172 AL--------------AQLQQAAIE-REARRELLQYQLKELNEFAPQPGEYEHIDIEYKR 216

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
             +         + ++  + L +  + + +
Sbjct: 217 LANSG---QLLTMSQQAMQLLSENEEQNIL 243


>gi|167830098|ref|ZP_02461569.1| putative old protein [Burkholderia pseudomallei 9]
 gi|226193570|ref|ZP_03789175.1| ATP-dependent endonuclease, OLD family [Burkholderia pseudomallei
           Pakistan 9]
 gi|225934452|gb|EEH30434.1| ATP-dependent endonuclease, OLD family [Burkholderia pseudomallei
           Pakistan 9]
          Length = 616

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 11/107 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-----GFRRA 59
           +++    +  F+      L ++    + +G+N  GK+ IL AI+    G         R 
Sbjct: 1   MRLCRFEVRNFKCVEYASLEWED-LLVLIGENNAGKSTILSAIAAFLSGSAIKDPSLFRR 59

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
              DV      +        +G+       + +  R +     L+  
Sbjct: 60  HLTDV-----ANAIELIGHFDGLSDEETTQVAVRGRMNGDRWVLKKR 101


>gi|198241855|ref|YP_002216692.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197936371|gb|ACH73704.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326624449|gb|EGE30794.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 553

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 86/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + FA  +    L  +  + +  + R     ++     R    +N       
Sbjct: 57  TGATRADLCARFALKDTPAALRWLE-ENQLEESRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               + LT+     S   
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QQLTKPEQQKSLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
           S   + A    +   AR ++ +     +  + Q+      +  L  +   + +       
Sbjct: 148 SYANEAAL--AQQMAARYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDFNPQAG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|118467978|ref|YP_889254.1| hypothetical protein MSMEG_5002 [Mycobacterium smegmatis str. MC2
          155]
 gi|118169265|gb|ABK70161.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
          155]
          Length = 877

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L ++ +R      + F D    +  G N +GK++++EA+  L
Sbjct: 1  MKLHRLVLTNYRGITHREIEFPDHGVVVVSGANEIGKSSMIEALDLL 47


>gi|53713065|ref|YP_099057.1| hypothetical protein BF1776 [Bacteroides fragilis YCH46]
 gi|52215930|dbj|BAD48523.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 515

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + I+ + +  FR Y +   V  +  T FVG N +GK+ ILEA+
Sbjct: 1  MLIRSVTLKNFRGYRNETTVLFSNLTTFVGRNDIGKSTILEAL 43


>gi|117928029|ref|YP_872580.1| SMC domain-containing protein [Acidothermus cellulolyticus 11B]
 gi|117648492|gb|ABK52594.1| SMC domain protein [Acidothermus cellulolyticus 11B]
          Length = 917

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +++    +  +R +  L + FD   T+  GDN  GK+ ++EAI      +
Sbjct: 1  MRLDSATVRRYRLHRDLTVEFDPSRTLITGDNETGKSTLVEAIHRALFLK 50


>gi|327267570|ref|XP_003218572.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of
           chromosomes protein 3-like [Anolis carolinensis]
          Length = 1217

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 87/278 (31%), Gaps = 43/278 (15%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + +  + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R   
Sbjct: 1   MCLFQVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP-- 58

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                          A +    G   IS  +E   D S   L I+   + +   +     
Sbjct: 59  -----------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKD 107

Query: 122 ISWLV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNR 171
             +L         +  +       R           +P +  +     ++       R +
Sbjct: 108 QYFLDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLK 157

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           LL E      +    + +   L  +    R + IN L   I E +        +L+    
Sbjct: 158 LLREVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQK 215

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
            D         +   Y ++L + R    +  ++R   G
Sbjct: 216 WDKMRRALEYTI---YNQELNETRAKLDELSAKRETSG 250



 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QI 345
            S G++ +V + +  A           AP  L DEI   LD   R A+  ++ ++ S  Q 
Sbjct: 1116 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELASHAQF 1170

Query: 346  FMTGTDKSVFDS 357
              T     + +S
Sbjct: 1171 ITTTFRPELLES 1182


>gi|259415026|ref|ZP_05738948.1| conserved ATP-binding component of ABC transporter [Silicibacter
           sp. TrichCH4B]
 gi|259348936|gb|EEW60690.1| conserved ATP-binding component of ABC transporter [Silicibacter
           sp. TrichCH4B]
          Length = 505

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 11/106 (10%)

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           DL V Y  + + +   S G Q+  L+      A  I        +LLLDE + HLD ++ 
Sbjct: 109 DLSVPYELQHLRLRELSGGWQRTALLA-----AEWIKE----PDVLLLDEPTNHLDLNRI 159

Query: 332 NALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
             L   ++ +     + +T  D++  D+      F+R  + +   +
Sbjct: 160 GMLQDWLSRLPRDVAVVITSHDRAFLDATTNRTVFLRAESARVFSL 205


>gi|238784172|ref|ZP_04628185.1| DNA repair protein recN [Yersinia bercovieri ATCC 43970]
 gi|238714881|gb|EEQ06880.1| DNA repair protein recN [Yersinia bercovieri ATCC 43970]
          Length = 553

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 85/278 (30%), Gaps = 36/278 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAIDALGLCLGSRS-----DGSMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E           L        R    IN   V +  
Sbjct: 57  LGATRADICARFSLADTPSARQWLENNHLDDSNECLLRRAIGTDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMI 160
           + EL +HL       +   +       +++ LD            +  + I  +  R + 
Sbjct: 117 LRELGQHLIQIHGQHAHQLLLR--PDHQKQLLDAYADQSLLLAEMKAAYQIWHQSCRALA 174

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQK 218
             ++    RN       +     +S   Q  E   +I+     + N   L SL  + +Q+
Sbjct: 175 LHQQQSLERNARHELLQYQLKELNSFAPQAGEY-EQIDSEYKRLANSGQLLSLSQQTLQQ 233

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
            +       L+     K   +  A  +E    L +  +
Sbjct: 234 LSDDEQSNILSQLYSAKNQLTELASMDEQFNNLLNMLE 271


>gi|115384568|ref|XP_001208831.1| hypothetical protein ATEG_01466 [Aspergillus terreus NIH2624]
 gi|114196523|gb|EAU38223.1| hypothetical protein ATEG_01466 [Aspergillus terreus NIH2624]
          Length = 1179

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRITEIVIDGFKSYAVRTVIGGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDTAKSPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|329896665|ref|ZP_08271658.1| Chromosome partition protein smc [gamma proteobacterium IMCC3088]
 gi|328921601|gb|EGG28977.1| Chromosome partition protein smc [gamma proteobacterium IMCC3088]
          Length = 930

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 20/149 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F    +  VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKSIKLAGFKSFVDPTTVQFPHNMSAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGES 60

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             DV   GS              G A I +  + +D        +     R  +      
Sbjct: 61  MTDVIFNGSGG--------RQPVGQASIELVFDNQDGT------VGGEYARFSE--IAIK 104

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVF 149
           R+       D   +G    RR   D  + 
Sbjct: 105 RLVTRAGQSDYFLNGARCRRRDITDIFLG 133


>gi|297826003|ref|XP_002880884.1| hypothetical protein ARALYDRAFT_344464 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297326723|gb|EFH57143.1| hypothetical protein ARALYDRAFT_344464 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1138

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 3/106 (2%)

Query: 5   IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
           + IK + I  F++Y        F  +    VG NG GK+N   AI   LS      R+  
Sbjct: 1   MYIKQVIIEGFKSYKEQVATEDFSNKVNCVVGANGSGKSNFFHAIRFVLSDIFQNLRSED 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                          A VE +   +D    ++  + R  R + +  
Sbjct: 61  RHALLHEGAGHQVVSAFVEIVFDNSDNRFPVDKEEIRLRRTVGLKK 106


>gi|254498005|ref|ZP_05110768.1| putative SMC domain protein [Legionella drancourtii LLAP12]
 gi|254352782|gb|EET11554.1| putative SMC domain protein [Legionella drancourtii LLAP12]
          Length = 816

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ + I   R    L       + +  G NG GK+ I++AI F   G
Sbjct: 3  RIESITIENLRGIKRLHHNLGHGNLVIQGPNGSGKSGIIDAIEFALTG 50


>gi|126733815|ref|ZP_01749562.1| chromosome segregation protein, putative [Roseobacter sp. CCS2]
 gi|126716681|gb|EBA13545.1| chromosome segregation protein, putative [Roseobacter sp. CCS2]
          Length = 1151

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFSKLRLNGFKSFVDPTDLIIADGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLA------DISIKLETRDDR-SVRCLQINDV 108
             DV   G+      +F      ++  E LA      D ++++  R  R +    ++   
Sbjct: 61  MEDVIFAGAATRPARNFAEVSLVIDNGERLAPAAFNDDDNLEIIRRITRDAGSAYKVGAK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + +     RRR L+
Sbjct: 121 DVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKARRRILE 165


>gi|83773137|dbj|BAE63264.1| unnamed protein product [Aspergillus oryzae]
          Length = 1169

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 34/184 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           ++ +    F  +    +         VG NG GK+ +L AI+    G+     R  S   
Sbjct: 103 LERVECYNFMCHDHFYVELGPLINFIVGKNGSGKSAVLTAITLCLGGKASATNRGQSLKS 162

Query: 64  VTRIGSPSF-------FSTFARVEGMEGLADI------SIKLETRDDRSV----RCLQIN 106
             + G            +   R++     A +      SI +E    ++     +    N
Sbjct: 163 FIKEGKEYVRLSLYWSATIVVRIKNQGDGAYMPDDYGKSIVIERHFTKAGTSGFKIKAEN 222

Query: 107 DVVIRV----VDELNKHLRISWLVP--------SMDRIFSGLSMERRRFL--DRMVFAID 152
             ++      +D +     + +  P        +   + S    E+ +F      +  +D
Sbjct: 223 GRIVSTKKAELDAIIDFFTLQFDNPMNVLSQDMARQFLSSSSPAEKYKFFVKGVQLEQLD 282

Query: 153 PRHR 156
             +R
Sbjct: 283 QDYR 286


>gi|126461562|ref|YP_001042676.1| DNA repair protein RecN [Rhodobacter sphaeroides ATCC 17029]
 gi|332557551|ref|ZP_08411873.1| DNA repair protein RecN [Rhodobacter sphaeroides WS8N]
 gi|126103226|gb|ABN75904.1| DNA repair protein RecN [Rhodobacter sphaeroides ATCC 17029]
 gi|332275263|gb|EGJ20578.1| DNA repair protein RecN [Rhodobacter sphaeroides WS8N]
          Length = 546

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 2  LRSLDIRDMLIIDRLSLAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 56

Query: 67 IGSPSFFSTFA 77
           G+     T  
Sbjct: 57 AGADKGEVTAV 67


>gi|332533042|ref|ZP_08408912.1| exonuclease SbcC [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037521|gb|EGI73974.1| exonuclease SbcC [Pseudoalteromonas haloplanktis ANT/505]
          Length = 1216

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 73/259 (28%), Gaps = 20/259 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           +KI  + I    +     + F      DA      GD G GK+  L+AI      +  R 
Sbjct: 1   MKITAVRIHNLASIVDAEIDFTQAPLKDAGLFAITGDTGAGKSTFLDAICLALYTKTARL 60

Query: 59  ASYA-DVTRIGSPSFFSTFARVEGMEGLADISIKLE-TRDDRSVRCLQ--INDVVIRVVD 114
                ++      S     AR     G  +   +++    D+ +   +  I+    +V  
Sbjct: 61  RGDKGNLIEFNGDSIKLNDARNLLRRGTWEGYAEVDFLGQDKQLYRARYTISRTHKKVTG 120

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRF--LDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           +L         +P    I       +     +                +F   ++     
Sbjct: 121 KLKVAEHTLITLPDETLIADKSHTIKEVESKIGLNFEQFSRAVLLAQHEFAAFLKA---- 176

Query: 173 LTEGYFDSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
              G   +     +    + + +GV+I     E +  L +L             +L L  
Sbjct: 177 --TGDERAQLLECLTGTDKFSRIGVRIFERHKEQVAKLEALKAGLESYTLLTSDELELQQ 234

Query: 231 FLDGKFDQSFCALKEEYAK 249
                        K+E  K
Sbjct: 235 TKLTDLKAQTEHTKKELTK 253


>gi|317491425|ref|ZP_07949861.1| hypothetical protein HMPREF0864_00624 [Enterobacteriaceae
          bacterium 9_2_54FAA]
 gi|316920972|gb|EFV42295.1| hypothetical protein HMPREF0864_00624 [Enterobacteriaceae
          bacterium 9_2_54FAA]
          Length = 556

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ + I  FR    L L  D   T+ +G+N  GK+++L+A++  
Sbjct: 1  MYLERIEIVGFRGINRLSLTLDEN-TVLIGENAWGKSSLLDALTLC 45


>gi|315650025|ref|ZP_07903105.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487795|gb|EFU78098.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 476

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 12/124 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++  + I     +       D +     G NGVGKT++++AI +    +  R      +
Sbjct: 1   MRVTKIKIKNL--FGIKEYEADGKSVELSGKNGVGKTSVIDAIRYALTNKSSR----DYI 54

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV-DELNKHLRIS 123
            R G            G+          E     S + ++ N   +      L       
Sbjct: 55  VRNGENEGEILIETDNGLRIDRR-----ERLTQTSYKSVKSNGKEVPSPESFLRDIFTPL 109

Query: 124 WLVP 127
            L P
Sbjct: 110 QLNP 113


>gi|307111145|gb|EFN59380.1| hypothetical protein CHLNCDRAFT_13527 [Chlorella variabilis]
          Length = 169

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 3/100 (3%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYAD 63
           +  + I  F++Y    +   F  +    VG NG GK+N   AI   L             
Sbjct: 1   LSQVVIEGFKSYKDQTILEPFSNRINCVVGANGSGKSNFFHAIRFVLDDLFSSLSTEDRR 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
                S       A VE +   +D  + ++  + R  R +
Sbjct: 61  ALLHESVGHHVLSAYVEIVFDNSDNRLPVDKAEVRLRRSI 100


>gi|296417609|ref|XP_002838445.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634384|emb|CAZ82636.1| unnamed protein product [Tuber melanosporum]
          Length = 1482

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 16/120 (13%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            R+ I  L +  F++YA    +  F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 275 PRLVITHLVLMNFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 331

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
                   +    +      +  VE               +  +++   S R  + N   
Sbjct: 332 MRQGKVSALIHNSAAFPNLDYCEVEVHFQEVLDAAGGGHEVVPDSKLVVSRRAFKNNSSK 391


>gi|326201551|ref|ZP_08191422.1| hypothetical protein Cpap_3404 [Clostridium papyrosolvens DSM
          2782]
 gi|325988151|gb|EGD48976.1| hypothetical protein Cpap_3404 [Clostridium papyrosolvens DSM
          2782]
          Length = 669

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  + I  +++     +       + +G+NG GK+NIL A+ + 
Sbjct: 1  MGIAKIEILNYKSIKKCNMDLTD-INLLIGENGCGKSNILSAVKYF 45


>gi|269925812|ref|YP_003322435.1| SMC domain protein [Thermobaculum terrenum ATCC BAA-798]
 gi|269789472|gb|ACZ41613.1| SMC domain protein [Thermobaculum terrenum ATCC BAA-798]
          Length = 618

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/242 (20%), Positives = 80/242 (33%), Gaps = 22/242 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRR----ASY 61
           +  L I+ F+   SL + F  Q TI V G N  GK+ + EAI F   G+         S 
Sbjct: 4   LGELQITNFKRIRSLCITFPRQGTILVEGPNESGKSTLFEAIYFALYGQPIVTETNRKSL 63

Query: 62  ADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQ-------INDVVI--- 110
            D+   G            +      D ++K       ++R +        IN V     
Sbjct: 64  DDLITYGENQLRVKLSVHTDKNTLYIDRTVKRSKGSTITLRVMSGSGIEEVINSVRAANS 123

Query: 111 RVVDELNKHLRISWLVPS------MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
           R+V EL      + L         + ++    + ERR  L +++      +    +   +
Sbjct: 124 RIVQELGGIDGSALLNSCLVEQKKLSKLEELDAKERRDSLMKILNLEKLSYIEDRLRVPK 183

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
               +   L   Y  ++  S  E  +  L       R  +IN  SS       K      
Sbjct: 184 GEIEQLDALKIRYELANCLSQKEQLLVSLQELEEDYRNGLINMASSQSKSLYSKIASAKN 243

Query: 225 KL 226
            L
Sbjct: 244 DL 245


>gi|225017785|ref|ZP_03706977.1| hypothetical protein CLOSTMETH_01714 [Clostridium methylpentosum
           DSM 5476]
 gi|224949436|gb|EEG30645.1| hypothetical protein CLOSTMETH_01714 [Clostridium methylpentosum
           DSM 5476]
          Length = 662

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 16/148 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASY 61
           +K+  L+++ F+        FD Q     G NG GKT +  A+++L   +   G R  + 
Sbjct: 1   MKLLKLSLTNFQGIPHAEFDFDGQSASIYGTNGTGKTTVFNAMTYLLFDKASTGERNYTP 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
                 G+   F     VE +    D S ++  + D   +         +++D       
Sbjct: 61  KTTDHDGNDVHFLNHI-VEAVFQKEDGS-RITLKKDYHEKYKTKRGASEKLMDGHG---- 114

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVF 149
                  +D    G+ ++ ++F + + F
Sbjct: 115 -------VDYFVDGVPVKEKQFNNMLCF 135


>gi|306825345|ref|ZP_07458685.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432283|gb|EFM35259.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 679

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 16/192 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++IK + I  +R      L      ++ VG N  GKT++L  +      + F + S  ++
Sbjct: 1   MEIKKIYIQHYRLLNDFSLELKNDLSLIVGKNNCGKTSVLSVLE-----KIFNKNSNRNL 55

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                   +         E   +I    +  D      L IN  +     EL+ +  I  
Sbjct: 56  V-------WEDINLNHRREIFENIKRVSDIPDSELSSILGINLQIWIQYSELDSYQNIQG 108

Query: 125 L----VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                 P  + I    S        R + ++          FE  M+       E    S
Sbjct: 109 FMMDLNPENNFIILEFSYIIPTQKLREISSLTCDFADDFSKFESFMKKNLNKFFEIQIYS 168

Query: 181 SWCSSIEAQMAE 192
              + I  +M E
Sbjct: 169 RGYNPITQEMTE 180


>gi|282863226|ref|ZP_06272286.1| SMC domain protein [Streptomyces sp. ACTE]
 gi|282562208|gb|EFB67750.1| SMC domain protein [Streptomyces sp. ACTE]
          Length = 1017

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 21/224 (9%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDA----QHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           +++  L ++ F  +  +  + FDA       +  G  G GKT+IL+A+ +       G R
Sbjct: 1   MRLHRLTLTAFGPFGTTQEVDFDALSSAGLFLLHGPTGAGKTSILDAVCYALYAAVPGAR 60

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI--NDVVIRVVDE 115
           ++  A +    +P+   T  R+E   G   + +       R  +       +     + E
Sbjct: 61  QSPGAPLRSDHAPAGLPTEVRLELTVGGRRLEVTRRPAQPRPKKRGGGVTTEKAQSWLRE 120

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR----GRNR 171
                    L  S   I      E  + +                DF R +R     R +
Sbjct: 121 YRPEDGWQGLSRSHQEI----GEEISQLIGMSREQFCQVVLLPQGDFARFLRADAEARGK 176

Query: 172 LLTEGYFDSSWCSSIEAQMAEL---GVKINIARVEMINALSSLI 212
           LL    FD+   +++E ++AEL            E I AL+  I
Sbjct: 177 LLGRL-FDTRRFAAVEERLAELRRAAEARVRTADEQILALAQRI 219


>gi|149375772|ref|ZP_01893540.1| DNA repair protein RecN [Marinobacter algicola DG893]
 gi|149359897|gb|EDM48353.1| DNA repair protein RecN [Marinobacter algicola DG893]
          Length = 559

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 58/209 (27%), Gaps = 26/209 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +S +     + L F    T   G+ G GK+ +L+A+     GR     + A   R
Sbjct: 2   LTQLTVSNYAIAERVELQFGKGMTALTGETGAGKSIVLDALGLAMGGR-----ADAGAVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G+     T              +E  E   D    L     +  R    IN        
Sbjct: 57  HGAKRADITATFDVSRIAEARQWLENHELDDDHECILRRVISKDGRSRAYINGQPCPLAH 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM-----VFAIDPRHRRRMIDFERLMR 167
           + +L   L           +        R+ LD       +        +      + + 
Sbjct: 117 LKDLGSALMDIHSQHQHQSLLRK--ETHRKLLDEFAGAEALGEQTRDAWKAWHKTRQRLT 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
            R +   E             ++  L ++
Sbjct: 175 ERQQNADEAEARLQLLRYQVEELDRLALE 203


>gi|170733246|ref|YP_001765193.1| ATPase-like protein [Burkholderia cenocepacia MC0-3]
 gi|169816488|gb|ACA91071.1| ATPase-like protein [Burkholderia cenocepacia MC0-3]
          Length = 391

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +K L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 3  ALKTLAIANYRSLRELIVPLAA-LNVVTGPNGSGKSSVYRALRLLA 47


>gi|118590883|ref|ZP_01548283.1| probable dna repair protein [Stappia aggregata IAM 12614]
 gi|118436405|gb|EAV43046.1| probable dna repair protein [Stappia aggregata IAM 12614]
          Length = 555

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 19/149 (12%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I +      L L F +  ++  G+ G GK+ +L+++S     RG      AD+ R G 
Sbjct: 5   LSIRDIVLIDRLDLEFASGMSVLTGETGAGKSILLDSLSLALGARG-----DADLVRHGE 59

Query: 70  PSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                             TF R   ++   DI ++     D   R    +  V   +   
Sbjct: 60  AQGQVTAVFDVAAGHPVRTFLRENDVDDDGDIILRRIQTSDGRTRAFVNDQPVSAGLLRQ 119

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLD 145
              L +       DR         R  +D
Sbjct: 120 AGALLVEIHGQHDDRALV-DPESHRALID 147


>gi|59801785|ref|YP_208497.1| hypothetical protein NGO1443 [Neisseria gonorrhoeae FA 1090]
 gi|293398567|ref|ZP_06642745.1| chromosome segregation protein SMC [Neisseria gonorrhoeae F62]
 gi|59718680|gb|AAW90085.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|291611038|gb|EFF40135.1| chromosome segregation protein SMC [Neisseria gonorrhoeae F62]
          Length = 1161

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 40.7 bits (94), Expect = 0.43,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 76/218 (34%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++    +EA +A+   K+  + +      I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDVLEA-LAKESAKVLNSSIGSLTRQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAIALLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +   ++V ++  Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCKLVKEMSVQT 1115


>gi|148548402|ref|YP_001268504.1| ATPase-like protein [Pseudomonas putida F1]
 gi|148512460|gb|ABQ79320.1| ATPase-like protein [Pseudomonas putida F1]
          Length = 387

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 19/189 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  +R+   L L    Q  +  G NG GK+N+ +A+  L+            + R
Sbjct: 2   LTTLAIGNYRSINHLVLPLS-QLNLVTGANGSGKSNLYKALRLLAETAQ--GGVVEALAR 58

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G     + +A  E    +    + ++ +    VR L++      +   +   L I    
Sbjct: 59  EGGLD-STWWAGPETSARMRRGEVPIQGQHPSEVRRLRLGFATEDLGFAITLGLPIPLPY 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           PS   +       +   +     A  P           L+  R   L      + W + +
Sbjct: 118 PSAFML---DPEIKCEAI-WGAGAYRPS---------SLLVERKNALVRAREGNRW-AVL 163

Query: 187 EAQMAELGV 195
           + Q A+ G 
Sbjct: 164 D-QHADSGE 171


>gi|323474306|gb|ADX84912.1| hypothetical protein SiRe_0837 [Sulfolobus islandicus REY15A]
          Length = 397

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 10  LNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL-----SPGRGFRRASYAD 63
           + I  +R     + ++   +  + +G N VGKT+ILEAI+ L     S  R FR    + 
Sbjct: 138 IRIRNYRKLNDFKMILPSFKIGVILGKNNVGKTSILEAIAMLDKNNVSKIREFRGRISSQ 197

Query: 64  VTRIGSPSFFSTFARVE 80
           V    +  F + + RVE
Sbjct: 198 VA--ETELFLNEYYRVE 212


>gi|240116224|ref|ZP_04730286.1| hypothetical protein NgonPID1_08280 [Neisseria gonorrhoeae PID18]
 gi|260439963|ref|ZP_05793779.1| hypothetical protein NgonDG_02565 [Neisseria gonorrhoeae DGI2]
 gi|268601886|ref|ZP_06136053.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291043248|ref|ZP_06568971.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|268586017|gb|EEZ50693.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|291012854|gb|EFE04837.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 1161

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 40.7 bits (94), Expect = 0.44,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 76/218 (34%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++    +EA +A+   K+  + +      I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDVLEA-LAKESAKVLNSSIGSLTRQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAIALLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +   ++V ++  Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCKLVKEMSVQT 1115


>gi|42561011|ref|NP_975462.1| P115-like protein [Mycoplasma mycoides subsp. mycoides SC str. PG1]
 gi|42492508|emb|CAE77104.1| P115-like protein with SMC_C motif [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301320894|gb|ADK69537.1| chromosome segregation protein SMC [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 988

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/238 (18%), Positives = 81/238 (34%), Gaps = 42/238 (17%)

Query: 7   IKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K +  S F+++A L +  F+   T  VG NG GK+NI +AI +       +  R +   
Sbjct: 4   LKQIRASGFKSFADLTVMDFNYDMTGVVGPNGSGKSNITDAIRWTLGEQSTKTLRGSKMD 63

Query: 63  DVTRIGSPS------FFSTFARVEGMEGLADIS---IKLETRDDRSVR--CLQINDVVIR 111
           D+   G+           T       E  + I    +++  + D++ R     IN    +
Sbjct: 64  DIVFSGNNEKKAADVAEVTLVFNNIHENFSSIKSDVVEITRKFDKNTRESEFYINSTKCK 123

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
           + D  +  L    L  S   I S              +R   D             +  +
Sbjct: 124 LKDVQSIALEA-GLTRSSIAIISQGTVANFTESKPETKREIFDD---------AAGVSKY 173

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           ++  +     L +   + +    I         K    R+  +   S   +EY QK N
Sbjct: 174 KKRKKETLSKLEKATENLTRLEDI--------AKEISRRLPNLERQSKKALEYQQKVN 223


>gi|89895089|ref|YP_518576.1| hypothetical protein DSY2343 [Desulfitobacterium hafniense Y51]
 gi|219669502|ref|YP_002459937.1| DNA repair protein RecN [Desulfitobacterium hafniense DCB-2]
 gi|89334537|dbj|BAE84132.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539762|gb|ACL21501.1| DNA repair protein RecN [Desulfitobacterium hafniense DCB-2]
          Length = 555

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 25/205 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  +++  F    +++L F    TIF G+ G GK+ +++A+  L  GR     +  D  R
Sbjct: 2   LTEIHVENFALMEAVQLSFSRGLTIFSGETGTGKSMLIDALGVLLGGR-----ASTDFIR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVR---CLQINDVVIRV 112
            G                      E    + D  + L    +RS R    +Q   V + +
Sbjct: 57  HGLEKALVEGIFEECPPEVLEGLAEAGYPVEDGQLILSREINRSGRNICRVQGRTVPLTL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID----FERLMRG 168
              L + L           +F+      R  LD           +++      +  L++ 
Sbjct: 117 YRTLVQGLVDIHGQMEHQSLFN--PDSHRGLLDAFGGEQQLELLKQVNQSAKNYRGLLQR 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL 193
             +LL            +  Q+ E+
Sbjct: 175 EQQLLRSEADRERREDILRYQIDEI 199


>gi|166711575|ref|ZP_02242782.1| chromosome segregation protein [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 1167

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDV 108
             DV   GS +    + A VE +   +D +I  E                      +N  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDHTITGEFASFNEISVKRLVSRDGNSAYYLNGT 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 KCRRRD 126


>gi|116051772|ref|YP_789389.1| hypothetical protein PA14_15610 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586993|gb|ABJ13008.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 868

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 10/128 (7%)

Query: 241 CALKEEYAKKLF----DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL 296
            AL+ ++A+++      G  ++   + ++ G  R  + +     A      S GE + V 
Sbjct: 579 DALRAQFAREVASFEIAGLAVELRQQNSVQGIPRFKVALTRKPTAAVGQVLSEGEHRCVA 638

Query: 297 VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSV 354
           +  F+A      N +G    ++ D+  + LD   R A+ + +    +  Q+ +   D + 
Sbjct: 639 LAAFMAELATTENKSG----IVFDDPVSSLDHMHREAVAKRLVAEAAHRQVIVFTHDLAF 694

Query: 355 FDSLNETA 362
              LN  A
Sbjct: 695 LFELNRAA 702


>gi|87120177|ref|ZP_01076073.1| Purine NTPase [Marinomonas sp. MED121]
 gi|86164879|gb|EAQ66148.1| Purine NTPase [Marinomonas sp. MED121]
          Length = 786

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 90/264 (34%), Gaps = 19/264 (7%)

Query: 1   MTNRIKIKFLNISEFRNY-ASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           M+N  +++ L  + F+ +     + F      +F G NG GKT + +AI  L+   G RR
Sbjct: 1   MSNLYRLEKLTFNNFKLFGEEFTINFSGNELVVFDGPNGHGKTTVYDAIE-LALTGGIRR 59

Query: 59  ASYADVTRIGSPSFFS------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            +  +  +       +       F R+E       I I+   + D      +I++     
Sbjct: 60  FNSTENQQNPKDVVVAYKNSADCFVRLELRNDEDCILIERRLKKDLPNSAKKISNFRSLW 119

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
              L K+     +         G     R F    +F     +  +  D    ++ +   
Sbjct: 120 DLILLKNNERKIITEFDLNELIGSPNLGRDF---TLFH----YVEQ-EDTAHFLKHKKEK 171

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                    +  +IE Q     V+    R++ I  L     E    EN  +++ S  G  
Sbjct: 172 ERAEALSVLFGDTIEMQDKVFKVEQIEKRLDEI--LREKDREKKNLENRGNLETSEGGQE 229

Query: 233 DGKFDQSFCALKEEYAKKLFDGRK 256
                +S    K+ + +   +  +
Sbjct: 230 SILCFKSLLEWKDIHFEWDRENIE 253


>gi|300990714|ref|ZP_07179299.1| DNA repair protein RecN [Escherichia coli MS 200-1]
 gi|300305682|gb|EFJ60202.1| DNA repair protein RecN [Escherichia coli MS 200-1]
 gi|315284843|gb|EFU44288.1| DNA repair protein RecN [Escherichia coli MS 110-3]
          Length = 553

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 83/240 (34%), Gaps = 32/240 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       ++  LD         +       +  M  R +L
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTK--PEHQKFLLD--------GYANETSQLQE-MTARYQL 165

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             +   D +    +  + A    ++   +++ +N  +    E+ ++ +  + +L+ +G L
Sbjct: 166 WHQSCRDLAHHQQLSQERA-ARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQL 223


>gi|299771796|ref|YP_003733822.1| ATPase [Acinetobacter sp. DR1]
 gi|298701884|gb|ADI92449.1| ATPase [Acinetobacter sp. DR1]
          Length = 555

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 93/278 (33%), Gaps = 41/278 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQINDVV- 109
            GS     T                   ++   G   +   +            +N    
Sbjct: 57  YGSDKADITAVFTYQNNSPEAKWLQDHELDDDSGEIHLRRVIFATGRSK---AWVNGRPS 113

Query: 110 -IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLM 166
            +  + EL + L   +   S  ++        + +LDR    +A     R     ++R +
Sbjct: 114 SLSELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDRYNNFYAEANDVREAYSSWQRTI 171

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           R     L           ++E Q+ EL   I     E+         E+ +  +  HI  
Sbjct: 172 RLHQAALDAQATRLQRIGTLEHQIEELEEVIQTDYKEI-------EQEFDRLSHHEHIMQ 224

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
             +  L+   D++   + +E +  +   R+++S + R+
Sbjct: 225 DCSFSLNV-LDEAEQNITQEISSII---RRLESHAGRS 258


>gi|289548973|ref|YP_003473961.1| SMC domain protein [Thermocrinis albus DSM 14484]
 gi|289182590|gb|ADC89834.1| SMC domain protein [Thermocrinis albus DSM 14484]
          Length = 501

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 85/275 (30%), Gaps = 22/275 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  FR    + L F     +  G+ G GK+    A+ FL+               
Sbjct: 2   LLRLSIESFRLLKDVELNFSPGLNVITGETGSGKSMTFSAVRFLA--------------- 46

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G          VE    L +    +     R      +N +        +  LR   L 
Sbjct: 47  -GDEEESQEGTAVEMELELEEEEYVIRREIRRGRSRYYLNGMGSTAKVVKDILLRAILLQ 105

Query: 127 PSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
              DR+    S  +R   D +     +   ++     + ++ R R   L+    +    +
Sbjct: 106 GQNDRLSFLKSHYQRDIYDTLAGTLPLRKEYQDLYDRYRKI-RSRFEELSHRKKEKELRT 164

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
            +  +       I ++  E    +   + E  +KE    +       +D K  +    L+
Sbjct: 165 KLLEEEIREIESIGLSAEEY-ERIKEYLEELSRKEKICRLAEEGVRCIDDKVLEGLSTLR 223

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
           +           ++    R  +   RSDL+    D
Sbjct: 224 KICRDIGIKTEDLEEFRER--LIQLRSDLLSIIED 256


>gi|262377006|ref|ZP_06070232.1| DNA repair protein RecN [Acinetobacter lwoffii SH145]
 gi|262308044|gb|EEY89181.1| DNA repair protein RecN [Acinetobacter lwoffii SH145]
          Length = 553

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 57/187 (30%), Gaps = 30/187 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L +  D    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALAEHLAIDIDKGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGS----------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV- 109
            GS                 + +     ++   G   +   +            IN    
Sbjct: 57  YGSEKADVTASFSYQEHSPEAAWLKEHELDDESGEIHLRRVIFATGRSK---AWINGRPS 113

Query: 110 -IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR--RRMIDFERLM 166
            +  + E+ + L   +   S  ++        + +LDR      P          +++ +
Sbjct: 114 SLSELKEIGRLLVQLYSQHSQQQLLE--PPYPKHWLDRYYHFYAPAQAVRDAYSTWQKNI 171

Query: 167 RGRNRLL 173
           R     L
Sbjct: 172 RQHQAAL 178


>gi|229198638|ref|ZP_04325340.1| hypothetical protein bcere0001_41650 [Bacillus cereus m1293]
 gi|228584920|gb|EEK43036.1| hypothetical protein bcere0001_41650 [Bacillus cereus m1293]
          Length = 419

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 60/367 (16%), Positives = 111/367 (30%), Gaps = 74/367 (20%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           K++ L+I        L + F+       G NG+GKT IL  IS        R    +   
Sbjct: 3   KVRTLDIQRINGIKDLFIEFNPGLNFICGPNGIGKTTILNCISSAF----HRSGLSS--- 55

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                     F       G  +I ++              + +  +         R +  
Sbjct: 56  --------GIFPHNNAKYGEFNIGVE--------------DHLFSKSACFYVGEHRENIF 93

Query: 126 VPSMD---RIFSGLSMERRRFLDRMVFAIDPRHRRRMI--DFERLMRGRNRLLTEGYFDS 180
                    +   ++  R   ++  + +    +  +M+   F  +   ++ L T  Y D 
Sbjct: 94  SLEYQKTKNMHRHINDYRGNCINFNIRSRAFEYSLQMVGERFNHI---KSWLYTNYYKDE 150

Query: 181 SWCSS-IEAQMAELGVKINIARVEMINALSSLIM--EYVQKENFPHIKLSLTGFLDGKFD 237
                    Q+ +          E  N L   I      +        LS      GK  
Sbjct: 151 MDLHKFYNLQLVQ----------ECFNLLDPNISFGRITETVVTDRHPLSRHAMYKGKIG 200

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
            +  ++       L  GR        T+  P   D+ V+     + +   S+G  K  L 
Sbjct: 201 VNVNSI-------LKHGR------GYTVR-PKNLDMFVNTSHGEVLVECLSSG-YKSSLT 245

Query: 298 GIFLAHARLISNT------TGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTG 349
            + L   R I ++        F  I+++DEI  HL    +  L   +  +   +Q+  T 
Sbjct: 246 VL-LGVIRGIESSSTTGLVDEFNGIIIIDEIDLHLHPQWQAKLVDAIRKLVPKAQVICTT 304

Query: 350 TDKSVFD 356
               +  
Sbjct: 305 HSPHIIQ 311


>gi|193214989|ref|YP_001996188.1| SMC domain-containing protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193088466|gb|ACF13741.1| SMC domain protein [Chloroherpeton thalassium ATCC 35110]
          Length = 400

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 57/388 (14%), Positives = 121/388 (31%), Gaps = 49/388 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-------R 57
           ++I+ L++  ++ +    +   +   +F+G NG GK+ + +   FLS            R
Sbjct: 1   MQIEQLHVKNYKVFKDTEIRGLSNLCVFLGPNGSGKSTLFDVFGFLSDALQSNVTIAVNR 60

Query: 58  RASYADVTRIGSPS-----FFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
           R    +V   G        FF    R     E   +  I  + R         +   ++R
Sbjct: 61  RGGVKEVLARGCDPEKDELFFELKFRNPNAFENDFNPVITYQVRIGFERGKAIVRREILR 120

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
                       +L         G ++   +         +           +++   + 
Sbjct: 121 YRRGRKGK-PWHFLDFQDGA---GSAIVNEQAYGEEGATDERE--------NKVLSSPDI 168

Query: 172 LLTEGYFDSSWCSSIEA--QMAE----LGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           L  +G        ++    +M E        I+ AR      L   +      EN   + 
Sbjct: 169 LAVKGLGQFEQFRAVSEFRKMLEKWYISSFSIDAARRVSDTGLDEHLNAT--GENLAQVT 226

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
             +  +    FDQ    L +     +     +DS+  + ++     + +  +  K     
Sbjct: 227 KYIYEYHRDIFDQILHKLPQRI-PGISKVEAVDSIEGKVVLRFQDENFVDPFIGK----- 280

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV---TDIG 342
             S G  K+    I L             P+L ++E    L  D   +L   +    + G
Sbjct: 281 FVSDGTIKMFAYMILL-------YDPDPHPLLCIEEPENFLHPDLLVSLAEEIREYAERG 333

Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISNH 370
            Q+F++       ++L+    F  + + 
Sbjct: 334 GQVFVSTHSPDFVNALDIDELFFLVKDG 361


>gi|188992088|ref|YP_001904098.1| Chromosome segregation protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167733848|emb|CAP52054.1| Chromosome segregation protein [Xanthomonas campestris pv.
           campestris]
          Length = 1167

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 84/290 (28%), Gaps = 46/290 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDV 108
             DV   GS +    + A VE +   +D +I  E                      +N  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDHTISGEFASFNEISVKRLVSRDGNSAYYLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI-------DPRHRRRMID 161
             R  D +      + L P    I              M+  I          +      
Sbjct: 121 KCRRRD-ITDLFLGTGLGPRSYSIIEQG----------MISQIIEARPEDLRVYLEEAAG 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             +    R    T              ++ +L  +I       +  L     +  Q +  
Sbjct: 170 ISKYKERRKETETRIRHTRENLD----RLGDLREEITKQ----LAHLQRQARQAEQYQAL 221

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              +       D ++        +   + L +    +    + LI   R 
Sbjct: 222 QEER----RIKDAEWKALEYRGLDGRLQGLREKLNQEETRLQQLIAEQRD 267


>gi|153872188|ref|ZP_02001153.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152071344|gb|EDN68845.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 186

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--------SPGRGFRR 58
          IK  +I  FR +   +    A+  +  G N  GKT +LEA+  +        +    FR 
Sbjct: 2  IKSFDIKNFRCFKHTKATGFARINLVGGRNNAGKTALLEALLLMVKPSNESIAKLLSFRG 61


>gi|123508009|ref|XP_001329542.1| RecF/RecN/SMC N terminal domain containing protein [Trichomonas
           vaginalis G3]
 gi|121912498|gb|EAY17319.1| RecF/RecN/SMC N terminal domain containing protein [Trichomonas
           vaginalis G3]
          Length = 177

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 5/126 (3%)

Query: 3   NRIKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            ++K+  + +  F+++     +      +  VG NG GK+N+L++++F            
Sbjct: 2   GKLKLARIELENFKSFRGPHTIGPFLPFSGIVGPNGAGKSNVLDSLAFSLFLDP--NPRS 59

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            +          + F  V  +       I  E R D       +N    +  +E  K +R
Sbjct: 60  TNYIYKDPTDTSAKFCFVRTVFTEGKKEISFERRLDEKE-TYFVNGEE-KDPEEYVKIIR 117

Query: 122 ISWLVP 127
              + P
Sbjct: 118 DYKITP 123


>gi|12848443|dbj|BAB27956.1| unnamed protein product [Mus musculus]
 gi|28981308|gb|AAH48790.1| Smc6 protein [Mus musculus]
          Length = 326

 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 54  IESIQLRNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLK 113

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
              + G  S              ADISI L  R D + R     D ++
Sbjct: 114 GFVKAGQNS--------------ADISITLRNRGDDAFRANVYGDSIV 147


>gi|332524181|ref|ZP_08400408.1| AAA ATPase [Rubrivivax benzoatilyticus JA2]
 gi|332107517|gb|EGJ08741.1| AAA ATPase [Rubrivivax benzoatilyticus JA2]
          Length = 429

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + I  + +   + +  L           A  T+F GDNG GK+ +L+AI+    GR
Sbjct: 1  MYIDRIQLRNVKGFEKLSFNLVRPGGSHAGWTVFTGDNGAGKSTLLKAIALGLVGR 56


>gi|325915471|ref|ZP_08177785.1| condensin subunit Smc [Xanthomonas vesicatoria ATCC 35937]
 gi|325538353|gb|EGD10035.1| condensin subunit Smc [Xanthomonas vesicatoria ATCC 35937]
          Length = 1167

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 84/290 (28%), Gaps = 46/290 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDV 108
             DV   GS +    + A VE +   +D +I  E                      +N  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDHTITGEFASFNEISVKRLVSRDGNSAYYLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI-------DPRHRRRMID 161
             R  D +      + L P    I              M+  I          +      
Sbjct: 121 KCRRRD-ITDLFLGTGLGPRSYSIIEQG----------MISQIIEARPEDLRVYLEEAAG 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             +    R    T              ++ +L  +I       +  L     +  Q +  
Sbjct: 170 ISKYKERRKETETRIRHTRENLD----RLGDLREEITKQ----LAHLQRQARQAEQYQAL 221

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              +       D ++        +   + L +    +    + LI   R 
Sbjct: 222 QEER----RIKDAEWKALEYRGLDGQLQGLREKLNQEETRLQQLIADQRD 267


>gi|284052695|ref|ZP_06382905.1| ATPase [Arthrospira platensis str. Paraca]
 gi|291571891|dbj|BAI94163.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 351

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 10/60 (16%)

Query: 5  IKIKFLNISEFRNYASLRLVF-------DAQHTIFVGDNGVGKTNILEAISF---LSPGR 54
          +KI+ +N+  F+ + +L L F            + +G NG GKT+IL+A++    ++ GR
Sbjct: 1  MKIQSINLQYFKKFRNLVLDFTDSETGLAKDLIVLIGINGAGKTSILQALAATLGMATGR 60



 Score = 37.2 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETAKFMRIS 368
             ++L+DEI  HL    + AL R +  +G  +Q  +T T     + L   A  +R+ 
Sbjct: 295 NSVILIDEIELHLHPPMQQALLRSLPKLGKNNQFIIT-THSDYIEQLVPDAHIIRVE 350


>gi|238920387|ref|YP_002933902.1| hypothetical protein NT01EI_2497 [Edwardsiella ictaluri 93-146]
 gi|238869956|gb|ACR69667.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 296

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 15/160 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FR    + L  D   T+ +G+N  GK+++L+A++          +   D+
Sbjct: 1   MYLERIEVVGFRGINRISLSLDDN-TVLIGENAWGKSSLLDALTLCL-------SPERDL 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADIS---IKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            R     F+         E    I     ++E    R+ R  +++ +     D L +   
Sbjct: 53  YRFQPHDFYFPPGDETAREHHLQIVFTFCEIERGHARARRYYRLSPLWQESGDRLQRIYF 112

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
                 S D          R FL+    ++   H   +  
Sbjct: 113 RQEGELSDDNTV----CTWRSFLNEQGESLSLHHVDLLAR 148


>gi|228476928|ref|ZP_04061573.1| DNA repair protein RecN [Streptococcus salivarius SK126]
 gi|228251502|gb|EEK10647.1| DNA repair protein RecN [Streptococcus salivarius SK126]
          Length = 556

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 69/221 (31%), Gaps = 22/221 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           +  + I  F     + L F+   T+  G+ G GK+ I++A++ +   R      R ++  
Sbjct: 2   LLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASK 61

Query: 63  DVTR----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN- 117
              +    I       +     G+    ++ I+ E          +IN  ++ +      
Sbjct: 62  AEIQGFFSIEQNPALVSILEDNGIPVEDELIIRREIFQ-NGRSVSRINGQMVNLTTLKAV 120

Query: 118 KHLRISWLVPSMDRIFSGLSME---RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            H  +              ++       F D+  F     ++     +  L +       
Sbjct: 121 GHFLVDIHGQHDQEELMKPALHITMLDAFGDKEFFQTKKEYQEYFDRYRELRKAVLEKQK 180

Query: 175 EGYFDSSWCSSIEAQMAELGV---------KINIARVEMIN 206
                 +    +  Q+AE+            +   R +++N
Sbjct: 181 NEQEHKARIEMLAFQIAEIEAVSLKSGEDLALMKERDKLLN 221


>gi|217968516|ref|YP_002353750.1| SMC domain protein [Thauera sp. MZ1T]
 gi|217505843|gb|ACK52854.1| SMC domain protein [Thauera sp. MZ1T]
          Length = 397

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI+ + +  F+ + ++ L       + VG NG GK+ + +   FL
Sbjct: 1  MKIESIRLKNFKAFRNVHLKDIPSFLVVVGANGSGKSTLFDVFGFL 46


>gi|213965936|ref|ZP_03394126.1| DNA repair protein RecN [Corynebacterium amycolatum SK46]
 gi|213951350|gb|EEB62742.1| DNA repair protein RecN [Corynebacterium amycolatum SK46]
          Length = 579

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 22/211 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRASYA 62
           +  ++I +        L F    T+  G+ G GKT ++ ++  L   R      R  +  
Sbjct: 2   LTEISIRDLGVIPDATLEFSPGLTVLTGETGAGKTMVVTSLKLLCGARADAGRVRTGADK 61

Query: 63  DVT-------RIGSPSFFSTFARVEGMEGLADI--SIKLETRDDRSVRCLQINDVVIRVV 113
            +         +      +  A V  + G  D      L  +     R            
Sbjct: 62  ALVEGRVSTEHLSEEESTTIDAVVSELGGERDENDEYLLARQVSAKGRSRAWVGGRSASA 121

Query: 114 DELNKHL-RISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRG 168
             L     R+  +    D++    + E+R  +DRM    +      HR++   +  L++ 
Sbjct: 122 AALADVSTRLIAIHGQNDQLRLQSADEQRAAIDRMDAETIAPTLETHRQQRAHWRSLVKE 181

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINI 199
               L E        +    Q++    +I+ 
Sbjct: 182 ----LEEKTSKRRELAMRADQLSFAIEEIDA 208


>gi|209879826|ref|XP_002141353.1| structural maintenance of chromosomes protein [Cryptosporidium
          muris RN66]
 gi|209556959|gb|EEA07004.1| structural maintenance of chromosomes protein, putative
          [Cryptosporidium muris RN66]
          Length = 1330

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 2  TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFR 57
          ++R+ I  L +  F++Y   ++   F    T  VG NG GK+N+++A+ F+     R  R
Sbjct: 19 SSRLIIHKLELENFKSYGGKKIIGPFHKSFTAIVGPNGSGKSNVIDAMLFVFGKRARHMR 78

Query: 58 RASYADVTR 66
              +D+  
Sbjct: 79 LNKVSDLVH 87


>gi|198282751|ref|YP_002219072.1| DNA repair protein RecN [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667121|ref|YP_002424946.1| DNA repair protein RecN [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|198247272|gb|ACH82865.1| DNA repair protein RecN [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218519334|gb|ACK79920.1| DNA repair protein RecN [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 558

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 15/112 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L + +F    ++ + F A  T+  G+ G GK+ +++AI+ L   +G      A+  R
Sbjct: 2   LLNLQVRDFALIDAVSIDFAAGLTVLTGETGAGKSILVDAIALLLGDKGH-----AEDIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            G+             E  A+  +  E    R +R  +I D  + ++  + +
Sbjct: 57  HGAEQA----------EISAEFGLSPEHPARRWLREQEIEDEDVCLLRRIIQ 98


>gi|113954217|ref|YP_731649.1| chromosome segregation protein SMC [Synechococcus sp. CC9311]
 gi|113881568|gb|ABI46526.1| chromosome segregation protein SMC [Synechococcus sp. CC9311]
          Length = 1201

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  + ++ F+++  ++ +  +   T+  G NG GK+NIL+ + F   L+  RG R   
Sbjct: 2  VHINQVGLTHFKSFGGAMTIPLETGFTVVTGPNGSGKSNILDGVLFCLGLANSRGMRADR 61

Query: 61 YADVTRIG 68
            D+   G
Sbjct: 62 LPDLVNSG 69


>gi|71734351|ref|YP_276885.1| ATP-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71554904|gb|AAZ34115.1| probable ATP-binding protein NMA0346 [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|320326368|gb|EFW82421.1| ATP-binding protein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331642|gb|EFW87580.1| ATP-binding protein [Pseudomonas syringae pv. glycinea str. race
          4]
          Length = 350

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 7  IKFLNISE---FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K L++     FR    L L       + VG+NG+GKT++L+    L
Sbjct: 2  LKTLSVKNLTVFR---ELNLTCSPGLNVIVGENGMGKTHLLKVAYAL 45


>gi|330970859|gb|EGH70925.1| hypothetical protein PSYAR_10222 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 727

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
            ++++ I  ++   +L +   ++  +F G N  GKT +LEAI  L+
Sbjct: 391 HLRWIRIDSYKQITNLEINKLSKINLFAGVNNCGKTTLLEAIYLLA 436


>gi|324997393|ref|ZP_08118505.1| ATPase AAA [Pseudonocardia sp. P1]
          Length = 249

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 12/81 (14%)

Query: 19  ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRRASYADVTRIGSPSF 72
               L      T  VG+NG GK+ ++EA++           R FR A+       GS S 
Sbjct: 37  EHGALPLYPGVTFLVGENGSGKSTLVEALAVAIGLNPEGGSRSFRFAT------RGSESD 90

Query: 73  FSTFARVEGMEGLADISIKLE 93
                RV    G    S  L 
Sbjct: 91  LGAHLRVARRPGRERTSFFLR 111


>gi|322503172|emb|CBZ38256.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1322

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 6  KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-------SPGRGFR 57
          KI  + +  F++Y     +      T  VG NG GK+N+++A+SF+       +     R
Sbjct: 4  KIHRVELDNFKSYYGKAVIGPFKDFTCVVGPNGAGKSNLMDALSFVLSSTVTQTSASSMR 63

Query: 58 RASYADVTRIGSPSF 72
            S  D     + + 
Sbjct: 64 GKSAVDFIHRKAKTA 78


>gi|256159209|ref|ZP_05457020.1| chromosome segregation protein SMC [Brucella ceti M490/95/1]
 gi|256254536|ref|ZP_05460072.1| chromosome segregation protein SMC [Brucella ceti B1/94]
 gi|261221715|ref|ZP_05935996.1| chromosome segregation protein SMC [Brucella ceti B1/94]
 gi|265997677|ref|ZP_06110234.1| chromosome segregation protein SMC [Brucella ceti M490/95/1]
 gi|260920299|gb|EEX86952.1| chromosome segregation protein SMC [Brucella ceti B1/94]
 gi|262552145|gb|EEZ08135.1| chromosome segregation protein SMC [Brucella ceti M490/95/1]
          Length = 1152

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|238814373|ref|NP_001154946.1| structural maintenance of chromosomes 6 [Nasonia vitripennis]
          Length = 1082

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62
           +IK + +  F  ++ + +  + +    VG NG GK+ IL A++     R     R  S  
Sbjct: 53  RIKKICMKNFMCHSLMSVDLNQKVNFIVGANGSGKSAILTALTVGLGARANVTNRGPSIR 112

Query: 63  DVTRIGSPSFFSTF 76
           +  + G  S     
Sbjct: 113 EFIKKGKSSAAVEI 126


>gi|23501398|ref|NP_697525.1| SMC family protein [Brucella suis 1330]
 gi|23347295|gb|AAN29440.1| SMC family protein [Brucella suis 1330]
          Length = 1152

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|89897555|ref|YP_521042.1| hypothetical protein DSY4809 [Desulfitobacterium hafniense Y51]
 gi|219670678|ref|YP_002461113.1| hypothetical protein Dhaf_4680 [Desulfitobacterium hafniense DCB-2]
 gi|89337003|dbj|BAE86598.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219540938|gb|ACL22677.1| conserved hypothetical protein [Desulfitobacterium hafniense DCB-2]
          Length = 458

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 74/410 (18%), Positives = 144/410 (35%), Gaps = 49/410 (11%)

Query: 7   IKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEA-ISFLSPGRGFRRA 59
           I +  +  FR+++++ L          +     G+NG GK+N++ + +  L     F+  
Sbjct: 2   ITYFELKNFRSFSNITLDLRKAYGKPKKVVFIYGENGSGKSNLMSSFLFLLQTLNTFKNQ 61

Query: 60  S-YADVTRIGSPSFFST---FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
               D+    S  F S      R + ++ +  +     +      + L     +      
Sbjct: 62  VELKDMPEYKSNLFESIKDDKIRHQLLQQILHMQFITLSNLIDEYKMLGNEKNMSTKFGF 121

Query: 116 LNKHLRISWLV-PSMDRIFSGLSMERRRFLDRMVFAIDPR--------HRRRMIDFERLM 166
             +    S+ +  S D+I       +    +  VF+I                 D+++ +
Sbjct: 122 RIEESDGSYFMEFSKDKIIKEELRYQINEREGTVFSISKNQITLSPTVFLDL--DYKKEL 179

Query: 167 RGR-NRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMI---NALSSLIMEYVQKENF 221
           +    +   +  F +  C+ IE + +     KIN   + +I     LS    E   +   
Sbjct: 180 QDNIEKYWGKHTFMAILCNEIETKNSNYIKAKINKNLLNVIWEMRGLSVWCKECHGETAR 239

Query: 222 PHIKLSLTGFLD--GKFDQSFCALK--EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
             I L     LD     DQ+   LK  E      F     D  +   +  P+ +D   + 
Sbjct: 240 ISIPLKFMRQLDEGSVKDQNNKELKLCETALNTFFTQLYSDIKAVHYVFTPNENDYSYEL 299

Query: 278 CDK--------AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           C K         I I+  STG +K++ +        L  +  G    +   +   H D  
Sbjct: 300 CFKKLIDGKLIDIPISLESTGTRKLLEI-----FPMLFGSVAGTPVFVDEIDSGIH-DVL 353

Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFDSLN-ETAKFMRIS---NHQALCI 375
            +N L R++  I  Q+  T  +  + +SL  E    +R++   N    C+
Sbjct: 354 MKNLLERLLESIEGQLIATTHNTLLMESLPTENTYIIRVNATGNKSIDCV 403


>gi|326385633|ref|ZP_08207267.1| SMC protein-like protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209967|gb|EGD60750.1| SMC protein-like protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 641

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-----SFLSPGRGFRR 58
           + +K + I   R++     +VFD   +I +G NG GKTN+L+ +      +L   R F +
Sbjct: 1   MLLKKITIENVRSFLDRREMVFDGPISIIIGPNGGGKTNLLDVVNTMLRRYLFATRYFTQ 60

Query: 59  ASYA------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
              A      ++      +        +       +SI++E          QI     R 
Sbjct: 61  KYDAEQKVQWELRHNDQLNNMRLEKHSDARSLPQHVSIEVEVSQGDLDNMAQI----QRD 116

Query: 113 VDELNK 118
            DEL K
Sbjct: 117 ADELRK 122


>gi|310818932|ref|YP_003951290.1| hypothetical protein STAUR_1659 [Stigmatella aurantiaca DW4/3-1]
 gi|309392004|gb|ADO69463.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 288

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          I+ ++   FR   ++ L+     T+ VG +  GKT++L+ + +
Sbjct: 2  IRSVHFENFRCLKNVELMLQP-LTVLVGASASGKTSVLDGMQY 43


>gi|294661473|ref|YP_003579926.1| gp46 recombination endonuclease subunit [Klebsiella phage KP15]
 gi|292660634|gb|ADE34882.1| gp46 recombination endonuclease subunit [Klebsiella phage KP15]
          Length = 565

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 11/112 (9%)

Query: 5   IKIKFLNISEFRNYASL-----RLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           +K+KF  ++ ++N  S+      + FD A+ T+  G NG GK+ ++EA+++   G+ FR 
Sbjct: 1   MKLKFKTLT-YQNILSVGNVPIVIDFDSAKKTLITGKNGGGKSTMIEALTYALFGKSFRD 59

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
                +      S       VE +    +   K+       V  +  N   +
Sbjct: 60  LKVGQLVN----SINKKKCLVELLIEYGNDEYKIIRGQKPKVFEIWKNGEKL 107


>gi|257485353|ref|ZP_05639394.1| ATP binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331010788|gb|EGH90844.1| ATP binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 452

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 63/381 (16%), Positives = 122/381 (32%), Gaps = 69/381 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAI-----SFLSPG 53
           ++IK   +     ++ L +          + T+ VG+NG GKT +L+++       ++  
Sbjct: 1   MEIKSFRLVNVGRFSDLEVALAPTERYASKVTVLVGNNGAGKTTLLKSVATSLSWLVARV 60

Query: 54  RGFRRA---SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           R  + A       + + G+ +  S   R+E +    D    LE+    +      N    
Sbjct: 61  RTPKGAGSRIDEGMVQNGTAT-SSITIRIEDVLISDDEINPLESEWAITATRKGRNATSS 119

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF--ERLMRG 168
            V+ ELN+                     R +  ++   +        +  +  ER +  
Sbjct: 120 TVLSELNRL----------------ADGYRSKLTEKSDTS-----LPLLAFYPVERSVIE 158

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
               +            ++     LG  ++  R            E    EN   I   L
Sbjct: 159 ----IPLKVHARHTFDQLDGYDNALGRGVDFRR------FFEWFREREDSENETGISTEL 208

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT---LIGPH----------RSDLIV 275
              L  K       L +   ++    R     + RT      P           R  + +
Sbjct: 209 LNELSQKILID-TELWKVLTREHASSRDRQLTAVRTAVEAFMPGFTKLRVKRKPRLHMAI 267

Query: 276 DYCDKAITIAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDEDK 330
           D   K + ++  S GE+ ++ +       LA     + N      I+L+DE+  HL    
Sbjct: 268 DKEGKTLNVSQLSQGEKSMMALVGDIARRLAMMNPALENPLHGNGIVLIDEVDLHLHPKW 327

Query: 331 RNALFRIVTDI--GSQIFMTG 349
           + +L   +T      Q  +T 
Sbjct: 328 QRSLIAQLTTTFPNCQFLLTT 348


>gi|226223719|ref|YP_002757826.1| ABC transporter ATP-binding protein [Listeria monocytogenes
          Clip81459]
 gi|225876181|emb|CAS04887.1| Putative ABC transporter ATP-binding protein [Listeria
          monocytogenes serotype 4b str. CLIP 80459]
          Length = 453

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +++  L I++  +  S  + F+   T F G NG GKT IL  +S +  G+
Sbjct: 1  MRLTRLKITDLHSSYSYDIEFNKDITFFYGTNGSGKTTILNILSSIVTGK 50


>gi|217421942|ref|ZP_03453446.1| SMC domain protein [Burkholderia pseudomallei 576]
 gi|217395684|gb|EEC35702.1| SMC domain protein [Burkholderia pseudomallei 576]
          Length = 140

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 48 LTALAIAHYRSLRELIVPL-ATLNVITGPNGSGKSSLYRALRLLA 91


>gi|237745213|ref|ZP_04575694.1| DNA repair protein recN [Fusobacterium sp. 7_1]
 gi|229432442|gb|EEO42654.1| DNA repair protein recN [Fusobacterium sp. 7_1]
          Length = 558

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 83/258 (32%), Gaps = 22/258 (8%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ ++ L I        L + F+    +  G+ G GK+ IL  I+ L   +     +
Sbjct: 1   MGRKLMLRELKIENLAIIDELDIEFEKGFIVLTGETGAGKSIILSGINLLIGEK-----A 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+ R G  +  +        E       KLE           I         +    +
Sbjct: 56  SVDMIRDGEENLVAQGVFDVDEEQKK----KLEAMGIDIDGDEIIIRRSYSRSGKARAFI 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
               +  +  +  +         L  +V     +      +  +L+   + L  +     
Sbjct: 112 NNVRITLADLKEIAST-------LVDIVGQHSHQMLLNKNNHIKLLD--SFLSKDEKDLK 162

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS--LTGFLDGKFDQ 238
               ++ +Q  E+  KI     E    L        Q E    +KL       L+ ++ +
Sbjct: 163 ENLVTLLSQYREINTKIENIEREKKETLEKKEFYEYQLEEIEKLKLKDGEDEILEAEYKR 222

Query: 239 SFCALKEEYAKKLFDGRK 256
            F A  E+  +K+++  +
Sbjct: 223 VFNA--EKIREKVYESLE 238


>gi|192359535|ref|YP_001982385.1| chromosome segregation protein SMC [Cellvibrio japonicus Ueda107]
 gi|190685700|gb|ACE83378.1| chromosome segregation protein SMC [Cellvibrio japonicus Ueda107]
          Length = 1169

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  +
Sbjct: 1   MRLKCIKLAGFKSFVDPTTVNFPSNLCAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGEN 60

Query: 61  YADVTRI--------GSPSFFSTFARVEGM---EGLADISIKLETRDDR-SVRCLQINDV 108
             DV           G  S    F   +G    E  +   I ++ +  R       +N  
Sbjct: 61  MTDVIFNGSSGRKPVGQASIELVFDNSDGTLLGEYASFTEISIKRKVTRDGENSYYLNGT 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 KCRRRD 126


>gi|21231021|ref|NP_636938.1| chromosome segregation protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768974|ref|YP_243736.1| chromosome segregation protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112645|gb|AAM40862.1| chromosome segregation protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574306|gb|AAY49716.1| chromosome segregation protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1167

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 86/290 (29%), Gaps = 46/290 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-----------INDV 108
             DV   GS +    + A VE +   +D +I  E      +   +           +N  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDHTISGEFASFNEISVKRLVSRDGTSAYYLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI-------DPRHRRRMID 161
             R  D +      + L P    I              M+  I          +      
Sbjct: 121 KCRRRD-ITDLFLGTGLGPRSYSIIEQG----------MISQIIEARPEDLRVYLEEAAG 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             +    R    T              ++ +L  +I       +  L     +  Q +  
Sbjct: 170 ISKYKERRKETETRIRHTRENLD----RLGDLREEITKQ----LAHLQRQARQAEQYQAL 221

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              +       D ++        +   + L +    +    + LI   R 
Sbjct: 222 QEER----RIKDAEWKALEYRGLDGRLQGLREKLNQEETRLQQLIAEQRD 267


>gi|17228003|ref|NP_484551.1| hypothetical protein alr0507 [Nostoc sp. PCC 7120]
 gi|17129852|dbj|BAB72465.1| alr0507 [Nostoc sp. PCC 7120]
          Length = 394

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 5/135 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  + I  +R + SL +       + +G NG GK+ + +   FL      +      +
Sbjct: 1   MKIVSIKIKNYRAFESLEIKEIPTFCVIIGANGTGKSTLFDIFGFLRDA--LKNNIRQAL 58

Query: 65  -TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV--DELNKHLR 121
             R G     +     E +E      + +   +      L +     R +   E+ ++ R
Sbjct: 59  QIRGGFNEVVTRGKEQEDIEIELKFRMNILETERLVTYILNVGQEERRPLVKREILRYKR 118

Query: 122 ISWLVPSMDRIFSGL 136
             +  P     F   
Sbjct: 119 GEYGSPYHFLDFQNG 133


>gi|84393525|ref|ZP_00992280.1| predicted ATP-dependent endonuclease [Vibrio splendidus 12B01]
 gi|84375878|gb|EAP92770.1| predicted ATP-dependent endonuclease [Vibrio splendidus 12B01]
          Length = 603

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++++ + IS FR    + L FD   T  +G+N  GK+++L+A+S + P       S    
Sbjct: 1   MQLERIEISGFRGIKRMSLAFDE-LTTLIGENTWGKSSLLDALSVVLP-------SDGVP 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDELN 117
                  F   ++          I + L+  D   +   +      I V DE  
Sbjct: 53  YHFEMTDFHVDYSVSHPQSQHLQIVLALKANDKSELNAGRYRKLKPIWVQDEFG 106


>gi|325190125|emb|CCA24606.1| structural maintenance of chromosomes protein 5 puta [Albugo
           laibachii Nc14]
          Length = 1083

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y         +  + +G NG GK++++ A+     G   +         
Sbjct: 23  IYRVKLHNFLTYNDAEFHPGPRLNLILGPNGTGKSSVVCALCV-GLGGSTKV-------- 73

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +G       F R E   G  +I +   + +    R +Q + 
Sbjct: 74  LGRADKVGQFVRHEKESGFVEIELFFGSGNSIIRRIIQRDH 114


>gi|325190122|emb|CCA24603.1| structural maintenance of chromosomes protein 5 puta [Albugo
           laibachii Nc14]
          Length = 1099

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y         +  + +G NG GK++++ A+     G   +         
Sbjct: 23  IYRVKLHNFLTYNDAEFHPGPRLNLILGPNGTGKSSVVCALCV-GLGGSTKV-------- 73

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +G       F R E   G  +I +   + +    R +Q + 
Sbjct: 74  LGRADKVGQFVRHEKESGFVEIELFFGSGNSIIRRIIQRDH 114


>gi|307244826|ref|ZP_07526925.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307253780|ref|ZP_07535634.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307258236|ref|ZP_07539979.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
 gi|306854271|gb|EFM86477.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306863264|gb|EFM95204.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306867696|gb|EFM99541.1| DNA repair protein recN [Actinobacillus pleuropneumoniae serovar 11
           str. 56153]
          Length = 557

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 85/275 (30%), Gaps = 37/275 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L ++ F     L L  +   ++  G+ G GK+  ++A+S     R       + + R
Sbjct: 2   LTHLTVNNFAIVRHLTLELNEGMSVITGETGAGKSIAIDALSLCLGYRS-----ESSMIR 56

Query: 67  IGSP----------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VV 109
            G+                   +     +   +   +  ++     +   +    N  + 
Sbjct: 57  HGADKADITATFSMQATSPAYLWLKQHELLDEDNPQECILRRMINQEGRSKAFVNNRPLP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMR 167
           I  + EL ++L       +   +    S  +   LD    +  +      +   +++L +
Sbjct: 117 ISQLRELGQYLIHLNGQHAPQLLLK--SEYQLEVLDNYAGIHNLLNEMSSQYQRWKKLHQ 174

Query: 168 G-RN--RLLTEGYFDSSWCSSIEAQMAELGVKI--------NIARVEMINALSSLIMEYV 216
             +N  +   E             ++ E  +K           +R+    AL++L  E  
Sbjct: 175 QVKNFRQQCQENEARKQLLQYQVDELDEFAIKQGEFEEMEETHSRLSNSEALTALSQEVT 234

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
              +   + +    +   +  +    +   Y   L
Sbjct: 235 DLLSESELNVDSMLYKAIRHLEDLVEVDSRYQSAL 269


>gi|254701300|ref|ZP_05163128.1| chromosome segregation protein SMC [Brucella suis bv. 5 str. 513]
 gi|261751842|ref|ZP_05995551.1| chromosome segregation protein SMC [Brucella suis bv. 5 str. 513]
 gi|261741595|gb|EEY29521.1| chromosome segregation protein SMC [Brucella suis bv. 5 str. 513]
          Length = 1152

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|237814967|ref|ZP_04593965.1| chromosome segregation protein SMC [Brucella abortus str. 2308 A]
 gi|237789804|gb|EEP64014.1| chromosome segregation protein SMC [Brucella abortus str. 2308 A]
          Length = 1154

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 3   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 62

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 63  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 122

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 123 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 167


>gi|225852033|ref|YP_002732266.1| chromosome segregation protein SMC [Brucella melitensis ATCC 23457]
 gi|256044210|ref|ZP_05447117.1| chromosome segregation protein SMC [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256113025|ref|ZP_05453922.1| chromosome segregation protein SMC [Brucella melitensis bv. 3 str.
           Ether]
 gi|256264463|ref|ZP_05466995.1| SMC family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|260563569|ref|ZP_05834055.1| SMC family protein [Brucella melitensis bv. 1 str. 16M]
 gi|265990626|ref|ZP_06103183.1| chromosome segregation protein SMC [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994458|ref|ZP_06107015.1| chromosome segregation protein SMC [Brucella melitensis bv. 3 str.
           Ether]
 gi|225640398|gb|ACO00312.1| chromosome segregation protein SMC [Brucella melitensis ATCC 23457]
 gi|260153585|gb|EEW88677.1| SMC family protein [Brucella melitensis bv. 1 str. 16M]
 gi|262765571|gb|EEZ11360.1| chromosome segregation protein SMC [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001410|gb|EEZ13985.1| chromosome segregation protein SMC [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094794|gb|EEZ18532.1| SMC family protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326408527|gb|ADZ65592.1| chromosome segregation protein SMC [Brucella melitensis M28]
 gi|326538244|gb|ADZ86459.1| chromosome segregation protein SMC [Brucella melitensis M5-90]
          Length = 1152

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGHIGELIQAKPQARRALLE 165


>gi|213970337|ref|ZP_03398466.1| hypothetical protein PSPTOT1_1419 [Pseudomonas syringae pv.
          tomato T1]
 gi|213924808|gb|EEB58374.1| hypothetical protein PSPTOT1_1419 [Pseudomonas syringae pv.
          tomato T1]
          Length = 59

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + L +  F+ + SL L FDA   + +GDN  GK+++L A+
Sbjct: 20 QKLILQNFKKFDSLMLEFDAGVNVLIGDNETGKSSVLLAL 59


>gi|194099237|ref|YP_002002328.1| hypothetical protein NGK_1703 [Neisseria gonorrhoeae NCCP11945]
 gi|254494237|ref|ZP_05107408.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|193934527|gb|ACF30351.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
 gi|226513277|gb|EEH62622.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
          Length = 1161

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 40.3 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 76/218 (34%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++    +EA +A+   K+  + +      I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDVLEA-LAKESAKVLNSSIGSLTRQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAIALLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +   ++V ++  Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCKLVKEMSVQT 1115


>gi|161618470|ref|YP_001592357.1| chromosome segregation protein SMC [Brucella canis ATCC 23365]
 gi|254703845|ref|ZP_05165673.1| chromosome segregation protein SMC [Brucella suis bv. 3 str. 686]
 gi|260566901|ref|ZP_05837371.1| SMC family protein [Brucella suis bv. 4 str. 40]
 gi|261754497|ref|ZP_05998206.1| chromosome segregation protein SMC [Brucella suis bv. 3 str. 686]
 gi|161335281|gb|ABX61586.1| chromosome segregation protein SMC [Brucella canis ATCC 23365]
 gi|260156419|gb|EEW91499.1| SMC family protein [Brucella suis bv. 4 str. 40]
 gi|261744250|gb|EEY32176.1| chromosome segregation protein SMC [Brucella suis bv. 3 str. 686]
          Length = 1152

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|170721182|ref|YP_001748870.1| SMC domain-containing protein [Pseudomonas putida W619]
 gi|169759185|gb|ACA72501.1| SMC domain protein [Pseudomonas putida W619]
          Length = 387

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I  +R+   L L    Q  +  G NG GK+N+ +A+  L+
Sbjct: 2  LTTLAIGNYRSINHLVLPLS-QLNLVTGANGSGKSNLYKALRLLA 45


>gi|17987722|ref|NP_540356.1| chromosome segregation protein SMC2 [Brucella melitensis bv. 1 str.
           16M]
 gi|17983440|gb|AAL52620.1| chromosome segregation protein smc2 [Brucella melitensis bv. 1 str.
           16M]
          Length = 1154

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 3   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 62

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 63  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 122

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 123 EARAKDVQLLFADQSTGARSPSMVGQGHIGELIQAKPQARRALLE 167


>gi|89256325|ref|YP_513687.1| hypothetical protein FTL_0978 [Francisella tularensis subsp.
          holarctica LVS]
 gi|254367659|ref|ZP_04983680.1| hypothetical protein FTHG_00929 [Francisella tularensis subsp.
          holarctica 257]
 gi|89144156|emb|CAJ79417.1| hypothetical protein FTL_0978 [Francisella tularensis subsp.
          holarctica LVS]
 gi|134253470|gb|EBA52564.1| hypothetical protein FTHG_00929 [Francisella tularensis subsp.
          holarctica 257]
          Length = 96

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI  L I  ++N   + +  ++    F+  NG GK+N+LEA+SF+
Sbjct: 1  MKITRLKIKGYKNL-DIDIKHESNIMAFIRLNGSGKSNVLEALSFI 45


>gi|62289478|ref|YP_221271.1| SMC family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82699403|ref|YP_413977.1| ATP/GTP-binding domain-containing protein [Brucella melitensis
           biovar Abortus 2308]
 gi|189023727|ref|YP_001934495.1| SMC family protein [Brucella abortus S19]
 gi|254688789|ref|ZP_05152043.1| SMC family protein [Brucella abortus bv. 6 str. 870]
 gi|254696919|ref|ZP_05158747.1| SMC family protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729821|ref|ZP_05188399.1| SMC family protein [Brucella abortus bv. 4 str. 292]
 gi|256257035|ref|ZP_05462571.1| SMC family protein [Brucella abortus bv. 9 str. C68]
 gi|260545770|ref|ZP_05821511.1| SMC family protein [Brucella abortus NCTC 8038]
 gi|260754276|ref|ZP_05866624.1| chromosome segregation protein SMC [Brucella abortus bv. 6 str.
           870]
 gi|260757495|ref|ZP_05869843.1| chromosome segregation protein SMC [Brucella abortus bv. 4 str.
           292]
 gi|260761320|ref|ZP_05873663.1| chromosome segregation protein SMC [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883300|ref|ZP_05894914.1| chromosome segregation protein SMC [Brucella abortus bv. 9 str.
           C68]
 gi|297247891|ref|ZP_06931609.1| chromosome segregation protein SMC [Brucella abortus bv. 5 str.
           B3196]
 gi|62195610|gb|AAX73910.1| SMC family protein [Brucella abortus bv. 1 str. 9-941]
 gi|82615504|emb|CAJ10478.1| Disease resistance protein:ATP/GTP-binding site motif A
           (P-loop):Peptidase family S16:SMC protein,
           N-terminal:Structural main [Brucella melitensis biovar
           Abortus 2308]
 gi|189019299|gb|ACD72021.1| SMC family protein [Brucella abortus S19]
 gi|260097177|gb|EEW81052.1| SMC family protein [Brucella abortus NCTC 8038]
 gi|260667813|gb|EEX54753.1| chromosome segregation protein SMC [Brucella abortus bv. 4 str.
           292]
 gi|260671752|gb|EEX58573.1| chromosome segregation protein SMC [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674384|gb|EEX61205.1| chromosome segregation protein SMC [Brucella abortus bv. 6 str.
           870]
 gi|260872828|gb|EEX79897.1| chromosome segregation protein SMC [Brucella abortus bv. 9 str.
           C68]
 gi|297175060|gb|EFH34407.1| chromosome segregation protein SMC [Brucella abortus bv. 5 str.
           B3196]
          Length = 1152

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|46446311|ref|YP_007676.1| putative DNA repair protein RecN [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399952|emb|CAF23401.1| putative DNA repair protein RecN [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 541

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 80/255 (31%), Gaps = 42/255 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  +++I+ + +       +  + F +   I  G+ G GK+ I+     LS   G R   
Sbjct: 1   MLKQLRIQNIILV-----ENADISFSSGLNILTGETGSGKSAIM---HGLSLAIGERV-- 50

Query: 61  YADVTRIGSPSFFSTFA----RVE----------GMEGLADISIKLETRDDRSVRCLQIN 106
              + R G             R++            E   D+ I+ E       R    N
Sbjct: 51  DTSLIRKGCDKGIVEAIFDIDRLDLNNLLEEGGIDHESHQDLIIRREIAITGKNRIFINN 110

Query: 107 DVVIRV-VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFE 163
                  + +L   +       +   +F+      R  LD    +     R++   + +E
Sbjct: 111 QSAQASFLRKLGSQIVQIVGQRANQNLFNLD--YHREVLDIYGGLSPFLQRYKESYV-YE 167

Query: 164 RLMRGRNRLLTEGYF---------DSSWCSSIEAQM-AELGVKINIARVEMIN--ALSSL 211
             ++ R  LL +             S W    EAQ+ +    ++      + N   LS  
Sbjct: 168 NELKKRLDLLIQQDAHRMREIDICKSEWEELEEAQLKSGEDEELFTEYAILFNSEELSEK 227

Query: 212 IMEYVQKENFPHIKL 226
             E  Q      + +
Sbjct: 228 TREINQALTGEKVSI 242


>gi|307822588|ref|ZP_07652819.1| ATPase-like protein [Methylobacter tundripaludum SV96]
 gi|307736192|gb|EFO07038.1| ATPase-like protein [Methylobacter tundripaludum SV96]
          Length = 350

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            ++I+ F++   + L    +  + +G   VGK+NILEA+     G   R      +T+ 
Sbjct: 6  NSVHITNFKSLKDVTLSDCRRINLLIGKPNVGKSNILEALGLFGVGYS-RLNKNKKLTQF 64


>gi|289663139|ref|ZP_06484720.1| chromosome segregation protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 1167

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-----------INDV 108
             DV   GS +    + A VE +   +D +I  E      +   +           +N  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDHTISGEFASFNEISVRRLVSRDGTSAYYLNGT 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 KCRRRD 126


>gi|16580622|emb|CAD10418.1| SMC protein [Deinococcus radiodurans]
          Length = 1100

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 17/107 (15%)

Query: 7   IKFLNISEFRNYAS---LRLVFDAQ---HTIFVGDNGVGKTNILEAISFLSPG---RGFR 57
           I  + +  F+++A    L     +        +G NG GK+N++EAI + + G   R  R
Sbjct: 2   IHAITLQGFKSFADRTRLEFSLSSGSGGVCAVIGPNGSGKSNVVEAIRWATHGARARDLR 61

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
               +++   GS          +   GLA++ ++L T     +   +
Sbjct: 62  AGRGSELIFHGSGG--------KAPLGLAEVQLELRTPAGERLNVTR 100


>gi|325190121|emb|CCA24602.1| structural maintenance of chromosomes protein 5 puta [Albugo
           laibachii Nc14]
          Length = 1097

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y         +  + +G NG GK++++ A+     G   +         
Sbjct: 23  IYRVKLHNFLTYNDAEFHPGPRLNLILGPNGTGKSSVVCALCV-GLGGSTKV-------- 73

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +G       F R E   G  +I +   + +    R +Q + 
Sbjct: 74  LGRADKVGQFVRHEKESGFVEIELFFGSGNSIIRRIIQRDH 114


>gi|323693769|ref|ZP_08107964.1| DNA repair protein RecN [Clostridium symbiosum WAL-14673]
 gi|323502155|gb|EGB18022.1| DNA repair protein RecN [Clostridium symbiosum WAL-14673]
          Length = 557

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 89/289 (30%), Gaps = 40/289 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L + +     S  + FD    I  G+ G GK+ I+ +++     +     +
Sbjct: 1   MLFHLYVKNLALID-----SAEVEFDDGLNILTGETGAGKSVIIGSVNVALGAK-----A 50

Query: 61  YADVTRIGSPSFFSTFA----------RVEGMEGLADIS--IKLETRDDRSVRCLQINDV 108
             D+ R G  S +               +EG++   D    I +  +   +    +IN  
Sbjct: 51  SKDLIRQGCDSAYVELVFSVTDEKKRKELEGLDVHPDDDSLIIISKKIMPARSISKINGE 110

Query: 109 VI--RVVDELNKHL---------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
            +    + E+   L         +          I       R   L + +      +  
Sbjct: 111 TVTSARLREITGLLIDIHGQHEHQSLLYHARHLEILDEYGKTRTAGLKQKIAKEYHAYIE 170

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI----NIARVEMINALSSLIM 213
                E L   + + L E  F       IE    + G +        R      ++  + 
Sbjct: 171 LRKKLESLNLNQEQRLREMDFCRFEIDEIENADLKPGEEEECQSVYRRFSNAKRITESLA 230

Query: 214 EYVQKENFPHIKLSLTGFLDG-KFDQSFCALKEEYA--KKLFDGRKMDS 259
              +  +   I  +L    D  ++D+   +++++      L      + 
Sbjct: 231 LAHEAVSTDEISRALRAVDDAMQYDEELMSIRDQLYDVDSLLSDLTREI 279


>gi|299473405|emb|CBN77803.1| structural maintenance of chromosomes 1 protein [Ectocarpus
          siliculosus]
          Length = 1295

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          ++  +    F++YA +  +      T  +G NG GK+N+++AISF+   +    R    +
Sbjct: 3  RLIRIEAENFKSYAGTQIIGPFKDFTAVIGPNGAGKSNLMDAISFVLGVQSKHLRSTKLS 62

Query: 63 DVT 65
          D+ 
Sbjct: 63 DLV 65


>gi|299143834|ref|ZP_07036914.1| DNA repair protein RecN [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518319|gb|EFI42058.1| DNA repair protein RecN [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 554

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 17/115 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     LR+ F+    +  G+ G GK+ I++A+S +   R     +  DV +
Sbjct: 2   LLELSIKNFAIIEDLRVEFEKGLNVITGETGSGKSIIIDALSMVLGAR-----ASKDVIK 56

Query: 67  IGSPSFFSTFARVEGMEGLADIS-----------IKLETRDDRSVRCLQINDVVI 110
            G    F             ++            I  E R DR     +IN   I
Sbjct: 57  SGKEFAFIEAIFSNDGILKTELEKYDIDNDDLIVISREIRIDRPS-ITKINGRTI 110


>gi|259907662|ref|YP_002648018.1| recombination and repair protein [Erwinia pyrifoliae Ep1/96]
 gi|224963284|emb|CAX54769.1| Protein used in recombination and DNA repair (DNA repair protein
           RecN) [Erwinia pyrifoliae Ep1/96]
 gi|283477509|emb|CAY73425.1| DNA repair protein recN (Recombination protein N) [Erwinia
           pyrifoliae DSM 12163]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 64/208 (30%), Gaps = 28/208 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LSQLTISNFAIVRELEIDFQRGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  QGASRADICARFSLKDTPSAQRWLLDNQLDDGNECLLRRVIGSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDPRHRRRMIDFERLM 166
            + +L + L       +   +    S  ++  L+       +     RH R+     R +
Sbjct: 116 QLRDLGQTLIQIHGQHAHQLLLK--SEHQKTLLNAYAAEPELMQSMGRHYRQWHQSCRAL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELG 194
               +   E             ++ E  
Sbjct: 174 AQHQQQSQEREARRELLHYQLKELNEFA 201


>gi|189485519|ref|YP_001956460.1| DNA repair protein RecN [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287478|dbj|BAG13999.1| DNA repair protein RecN [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 554

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 102/324 (31%), Gaps = 50/324 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-- 64
           +  L+I  +     L + F    T+  G+ G GK+ ++++I  L+  R       AD+  
Sbjct: 2   LLALSIKNYALIEYLTIDFTGGFTVITGETGSGKSILIKSIELLTGAR-------ADLSS 54

Query: 65  TRIGSPSFFSTFARVEGMEGLAD-------------ISIKLETRDDRSVRCLQINDVVIR 111
            R G  +     A  E      D             I +   T ++       IND  + 
Sbjct: 55  IRSGCSACD-ITASFEYSNSKVDDFLDNFSISAGNNIVLIRRTIENTGKSKAFINDSHVS 113

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
           ++        +       ++        +   LD  +  I P  +     + ++   R++
Sbjct: 114 ILALATLGKLLIDFHGQDEKHSLLDLDAQLEILDNEIEDIRPLLKESAALYAQIKNLRSK 173

Query: 172 L--------LTEGYFDSSWCSSIEAQMAEL-----------------GVKINIARVEMIN 206
           L              D       E + AEL                   KI+    E+I+
Sbjct: 174 LEALNLSDAERGRKNDLYSFQVREIEDAELETGEDKKLELDIPKLKNAEKISALSQEIIS 233

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
           AL S     +         +            +   +++ Y +     R++D +  +T +
Sbjct: 234 ALYSSENSILGNILKTKKNIEAINSYGADASGAVSLIEQAYYQTEEAYREVDIILSKTRL 293

Query: 267 GPHR--SDLIVDYCDKAITIAHGS 288
            P +  + L      K +   +GS
Sbjct: 294 DPEKLNASLERVELIKKLKKKYGS 317


>gi|217974664|ref|YP_002359415.1| hypothetical protein Sbal223_3510 [Shewanella baltica OS223]
 gi|217499799|gb|ACK47992.1| conserved hypothetical protein [Shewanella baltica OS223]
          Length = 390

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I  +R+   + L    Q  +  G NG GK+N+ +A+  L+
Sbjct: 2  LTTLAIFNYRSLREIVLPLG-QLNLITGANGSGKSNLYKALRLLA 45


>gi|146101622|ref|XP_001469160.1| structural maintenance of chromosome (SMC) family protein
          [Leishmania infantum]
 gi|134073529|emb|CAM72261.1| putative structural maintenance of chromosome (SMC) family
          protein [Leishmania infantum JPCM5]
          Length = 1322

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 8/75 (10%)

Query: 6  KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-------SPGRGFR 57
          KI  + +  F++Y     +      T  VG NG GK+N+++A+SF+       +     R
Sbjct: 4  KIHRVELDNFKSYYGKAVIGPFKDFTCVVGPNGAGKSNLMDALSFVLSSTVTQTSASSMR 63

Query: 58 RASYADVTRIGSPSF 72
            S  D     + + 
Sbjct: 64 GKSAVDFIHRKAKTA 78


>gi|331697602|ref|YP_004333841.1| DNA repair protein RecN [Pseudonocardia dioxanivorans CB1190]
 gi|326952291|gb|AEA25988.1| DNA repair protein RecN [Pseudonocardia dioxanivorans CB1190]
          Length = 614

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/228 (17%), Positives = 79/228 (34%), Gaps = 35/228 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RR 58
           M   ++I+ L + +        L  D   T+  G+ G GKT ++  +S L  GR    R 
Sbjct: 16  MLAEMRIQGLGVID-----DATLELDPGLTVLTGETGAGKTMVVTGLSLLGGGRAEASRV 70

Query: 59  A--SYADVT--RIGSPSFFSTFARVEGMEGLAD--ISIKLETRDDRSVRCLQINDVVIRV 112
           +  +   V   R  + +     A   G +      I+++  + D RS   L    V + V
Sbjct: 71  SEGARRAVVEGRFLARAQALALAEEVGADVDDGELIAVRTVSADGRSRAHLGGRSVPVGV 130

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFERL--- 165
           +  L +            R+      ++R  LDR     V A    +R    +++++   
Sbjct: 131 LGRLAEASLAVHGQNDQLRLLR--PADQRALLDRYAGDAVAAPLQAYRAVRAEWQKVCAE 188

Query: 166 MRGRNRLLTEGYFDSSWCS-------------SIEAQMAELGVKINIA 200
           +  R         ++                 + + ++ E   ++  A
Sbjct: 189 LVERRDGARRLAQEADLLRHGLAEIEAVAPRPAEDRELVEQARRLAAA 236


>gi|328544980|ref|YP_004305089.1| RecF/RecN/SMC N terminal domain [polymorphum gilvum SL003B-26A1]
 gi|326414722|gb|ADZ71785.1| RecF/RecN/SMC N terminal domain, putative [Polymorphum gilvum
           SL003B-26A1]
          Length = 1152

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 78/225 (34%), Gaps = 40/225 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++   +  +     T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFNKLRVVGFKSFVEPMEFIIGDGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  E  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSLNRPARNTAEVTLYLDNSERRAPSGFNETDLLEVSRRIEREAGSIYRINAK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLDR--MVFAIDPRHRRR 158
            +R  D   L          P+M R      + S     RR+ L+    +  +  R    
Sbjct: 121 EVRARDVQLLFADASTGARSPAMVRQGQIGELISAKPTSRRQILEEAAGISGLHSR---- 176

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
                     R+               +E  + ++  +++  R +
Sbjct: 177 ----------RHEAEIRLRAAEQNLDRLEDVLVQIDAQLDSLRRQ 211


>gi|325190123|emb|CCA24604.1| structural maintenance of chromosomes protein 5 puta [Albugo
           laibachii Nc14]
          Length = 1061

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y         +  + +G NG GK++++ A+     G   +         
Sbjct: 23  IYRVKLHNFLTYNDAEFHPGPRLNLILGPNGTGKSSVVCALCV-GLGGSTKV-------- 73

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +G       F R E   G  +I +   + +    R +Q + 
Sbjct: 74  LGRADKVGQFVRHEKESGFVEIELFFGSGNSIIRRIIQRDH 114


>gi|325190120|emb|CCA24601.1| structural maintenance of chromosomes protein 5 puta [Albugo
           laibachii Nc14]
          Length = 1063

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y         +  + +G NG GK++++ A+     G   +         
Sbjct: 23  IYRVKLHNFLTYNDAEFHPGPRLNLILGPNGTGKSSVVCALCV-GLGGSTKV-------- 73

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +G       F R E   G  +I +   + +    R +Q + 
Sbjct: 74  LGRADKVGQFVRHEKESGFVEIELFFGSGNSIIRRIIQRDH 114


>gi|313234652|emb|CBY10607.1| unnamed protein product [Oikopleura dioica]
          Length = 1130

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 108/349 (30%), Gaps = 61/349 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  F +  + +  F+       G NG GK+ I+ A+  +  G   R A       
Sbjct: 28  IVSLTLENFMSTDNTKYPFNPTTNYIFGANGTGKSTIVAALFLIFDG---RTAKL----- 79

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G     S F   E     A I++++ T    ++       +  +     NK+ R     
Sbjct: 80  -GRADDLSMFVNRERPNKKARITVEISTGRGTTI------GIQRQWCSGKNKNTRWKM-- 130

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
                        R R    +         R +  +   ++   + L +   +       
Sbjct: 131 ------------RRERTSTFLPLNNKDELTRTINKYNLHVQNLMQFLPQEKVND------ 172

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
              +++L  K      + +NA    I +  +     H KL +      K  ++    +E 
Sbjct: 173 ---LSDLSSK------DRLNAFQQAISDGKENLLEKHEKL-MEYQDSTKNAKANIESQER 222

Query: 247 YAKKLFDGRKMDSMS--RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHA 304
             + L    + D +   R   +  H+         K          + K  LV + ++  
Sbjct: 223 KLEDLKRDEERDKVRVQRFQTMQKHKDKKQRFILIKNFV-----EWQMKKELVELTVSFH 277

Query: 305 RLISNTTGFAPILLLDEISAHL------DEDKRNALFRI---VTDIGSQ 344
                        L+ +++  L      +   R  LFR    + D GSQ
Sbjct: 278 EEWKRQHKEVKEKLMKDVNLQLAKLSKEEPVLRKKLFREKNVLEDKGSQ 326


>gi|241762592|ref|ZP_04760666.1| hypothetical protein ZmobDRAFT_1745 [Zymomonas mobilis subsp.
          mobilis ATCC 10988]
 gi|241372853|gb|EER62550.1| hypothetical protein ZmobDRAFT_1745 [Zymomonas mobilis subsp.
          mobilis ATCC 10988]
          Length = 532

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ---HTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          + +   +I+ FR +A L +    +     +  G NG GK++  +A+           
Sbjct: 1  MHLLSAHITNFRRFADLTIKEIPKTAKLVVLAGPNGSGKSSFFDALLLRYRLDSHFG 57


>gi|162447342|ref|YP_001620474.1| DNA repair protein ATPase [Acholeplasma laidlawii PG-8A]
 gi|161985449|gb|ABX81098.1| DNA repair protein, ATPase [Acholeplasma laidlawii PG-8A]
          Length = 547

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           + +L +  F     L + F    T   G+ G GK+ +LE++  L     F + S A+  R
Sbjct: 2   LNYLEVKNFALIDDLNIEFKHGLTSLTGETGSGKSILLESLQLL-----FGKRSDAEYIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADI----SIKLETRDDRSVR-CLQINDVVIRVVDELNKHLR 121
            G+                 D+     I L    D+S R  +++ND  I  +  L +   
Sbjct: 57  TGTTKATVLGRFSLTPNQARDLDLPNDITLSREIDQSGRHLVKLNDETI-TLARLRQITN 115

Query: 122 ISWLV 126
              L+
Sbjct: 116 KIGLI 120


>gi|261417102|ref|YP_003250785.1| chromosome segregation protein SMC [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|32452356|emb|CAD66598.2| SMC protein [Fibrobacter succinogenes]
 gi|261373558|gb|ACX76303.1| chromosome segregation protein SMC [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326426|gb|ADL25627.1| chromosome segregation protein SMC [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 1184

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFD-AQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRA 59
           ++I  L I  F+++A    + F     T  VG NG GK+NI +AI   L   +    R  
Sbjct: 1   MQITKLKIFGFKSFAQRTEINFPTKGLTAVVGPNGCGKSNITDAIRWVLGEQKAAALRMG 60

Query: 60  SYADVTRIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
              DV   G       + A V  +   +D ++  +  +    R +  +  
Sbjct: 61  KMQDVIFSGTEERAAMSLAEVSIVIDNSDGTLASDYSEVIVTRRVHRDGS 110


>gi|325190126|emb|CCA24607.1| structural maintenance of chromosomes protein 5 puta [Albugo
           laibachii Nc14]
          Length = 1077

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y         +  + +G NG GK++++ A+     G   +         
Sbjct: 23  IYRVKLHNFLTYNDAEFHPGPRLNLILGPNGTGKSSVVCALCV-GLGGSTKV-------- 73

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +G       F R E   G  +I +   + +    R +Q + 
Sbjct: 74  LGRADKVGQFVRHEKESGFVEIELFFGSGNSIIRRIIQRDH 114


>gi|256368950|ref|YP_003106456.1| chromosome segregation protein SMC [Brucella microti CCM 4915]
 gi|255999108|gb|ACU47507.1| chromosome segregation protein SMC [Brucella microti CCM 4915]
          Length = 1152

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|254693272|ref|ZP_05155100.1| SMC family protein [Brucella abortus bv. 3 str. Tulya]
 gi|261213522|ref|ZP_05927803.1| chromosome segregation protein SMC [Brucella abortus bv. 3 str.
           Tulya]
 gi|260915129|gb|EEX81990.1| chromosome segregation protein SMC [Brucella abortus bv. 3 str.
           Tulya]
          Length = 1152

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|241758637|ref|ZP_04756751.1| chromosome segregation protein SMC [Neisseria flavescens SK114]
 gi|241321148|gb|EER57344.1| chromosome segregation protein SMC [Neisseria flavescens SK114]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+    +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNTSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|240081217|ref|ZP_04725760.1| hypothetical protein NgonF_07900 [Neisseria gonorrhoeae FA19]
 gi|268597327|ref|ZP_06131494.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268551115|gb|EEZ46134.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +      I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESAKVLNSSIGSLTRQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAIALLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +   ++V ++  Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCKLVKEMSVQT 1115


>gi|240014697|ref|ZP_04721610.1| hypothetical protein NgonD_08643 [Neisseria gonorrhoeae DGI18]
 gi|240121219|ref|ZP_04734181.1| hypothetical protein NgonPI_05513 [Neisseria gonorrhoeae PID24-1]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +      I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESAKVLNSSIGSLTRQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAIALLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +   ++V ++  Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCKLVKEMSVQT 1115


>gi|239999520|ref|ZP_04719444.1| hypothetical protein Ngon3_08551 [Neisseria gonorrhoeae 35/02]
 gi|240017144|ref|ZP_04723684.1| hypothetical protein NgonFA_08246 [Neisseria gonorrhoeae FA6140]
 gi|240113429|ref|ZP_04727919.1| hypothetical protein NgonM_07664 [Neisseria gonorrhoeae MS11]
 gi|268595333|ref|ZP_06129500.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268599502|ref|ZP_06133669.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268548722|gb|EEZ44140.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583633|gb|EEZ48309.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +      I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESAKVLNSSIGSLTRQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAIALLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +   ++V ++  Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCKLVKEMSVQT 1115


>gi|255939049|ref|XP_002560294.1| Pc15g00680 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211584916|emb|CAP82954.1| Pc15g00680 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1179

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRITEIVIDGFKSYAVRTVISGWDEAFNSITGLNGSGKSNILDAICFVLGITNMTTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A+IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDTAKSPIGFEEYANISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|148560462|ref|YP_001258510.1| chromosome segregation protein SMC [Brucella ovis ATCC 25840]
 gi|163842779|ref|YP_001627183.1| chromosome segregation protein SMC [Brucella suis ATCC 23445]
 gi|254709640|ref|ZP_05171451.1| chromosome segregation protein SMC [Brucella pinnipedialis B2/94]
 gi|256031133|ref|ZP_05444747.1| chromosome segregation protein SMC [Brucella pinnipedialis
           M292/94/1]
 gi|256060630|ref|ZP_05450796.1| chromosome segregation protein SMC [Brucella neotomae 5K33]
 gi|260168264|ref|ZP_05755075.1| chromosome segregation protein SMC [Brucella sp. F5/99]
 gi|261317173|ref|ZP_05956370.1| chromosome segregation protein SMC [Brucella pinnipedialis B2/94]
 gi|261324627|ref|ZP_05963824.1| chromosome segregation protein SMC [Brucella neotomae 5K33]
 gi|261757728|ref|ZP_06001437.1| SMC family protein [Brucella sp. F5/99]
 gi|265988211|ref|ZP_06100768.1| chromosome segregation protein SMC [Brucella pinnipedialis
           M292/94/1]
 gi|294851872|ref|ZP_06792545.1| chromosome segregation protein SMC [Brucella sp. NVSL 07-0026]
 gi|148371719|gb|ABQ61698.1| chromosome segregation protein SMC [Brucella ovis ATCC 25840]
 gi|163673502|gb|ABY37613.1| chromosome segregation protein SMC [Brucella suis ATCC 23445]
 gi|261296396|gb|EEX99892.1| chromosome segregation protein SMC [Brucella pinnipedialis B2/94]
 gi|261300607|gb|EEY04104.1| chromosome segregation protein SMC [Brucella neotomae 5K33]
 gi|261737712|gb|EEY25708.1| SMC family protein [Brucella sp. F5/99]
 gi|264660408|gb|EEZ30669.1| chromosome segregation protein SMC [Brucella pinnipedialis
           M292/94/1]
 gi|294820461|gb|EFG37460.1| chromosome segregation protein SMC [Brucella sp. NVSL 07-0026]
          Length = 1152

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|153002086|ref|YP_001367767.1| hypothetical protein Shew185_3578 [Shewanella baltica OS185]
 gi|151366704|gb|ABS09704.1| conserved hypothetical protein [Shewanella baltica OS185]
          Length = 390

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I  +R+   + L    Q  +  G NG GK+N+ +A+  L+
Sbjct: 2  LTTLAIFNYRSLREIVLPLG-QLNLITGANGSGKSNLYKALRLLA 45


>gi|332876765|ref|ZP_08444523.1| DNA repair protein RecN [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332685324|gb|EGJ58163.1| DNA repair protein RecN [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 557

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  +    +L + F+   ++  G+ G GK+ IL AI  L    +  +  +     
Sbjct: 2   LKSLFIQNYALIDTLDIRFEPGFSVITGETGAGKSIILGAIGLLLGQRADCKSIKNGMSK 61

Query: 63  DVTR-------IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVV 113
            +          G   FF    R +      +  ++ E       R   IND    +  +
Sbjct: 62  CIIEAVFDLSAYGMQEFFE---RNDLEFDGKECIVRREITASGKSRAF-INDTPAPVSQL 117

Query: 114 DELNKHL 120
            EL + L
Sbjct: 118 KELGEML 124


>gi|325190124|emb|CCA24605.1| structural maintenance of chromosomes protein 5 puta [Albugo
           laibachii Nc14]
          Length = 1075

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y         +  + +G NG GK++++ A+     G   +         
Sbjct: 23  IYRVKLHNFLTYNDAEFHPGPRLNLILGPNGTGKSSVVCALCV-GLGGSTKV-------- 73

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
           +G       F R E   G  +I +   + +    R +Q + 
Sbjct: 74  LGRADKVGQFVRHEKESGFVEIELFFGSGNSIIRRIIQRDH 114


>gi|237797328|ref|ZP_04585789.1| SMC domain-containing protein [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331020178|gb|EGI00235.1| SMC domain-containing protein [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 1011

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 85/264 (32%), Gaps = 18/264 (6%)

Query: 6   KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYAD 63
           ++K + +S  R + A  ++      TI +  NG GKT I EA+ F   G+  R   +   
Sbjct: 3   QLKSITLSNIRRFGAETKIELSRGATILLAPNGTGKTAIFEAVEFALTGKISRLDGNLVP 62

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           + R        + ARV    G    S ++    D             +   ++   LR++
Sbjct: 63  IIRDSQ-----SMARVSLDFGDLQASAQVNKSGDVETTGDLSLLFPSKDPADIPFLLRLT 117

Query: 124 WLVP--SMDRIFSGLSM-----ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
            L+     + +             R  + +    +              ++     L   
Sbjct: 118 HLLDQREGEWLVKADPKVAGSQLERLPIGKDGSQVSSALASIRRALTEQIKQAKASLDSL 177

Query: 177 YFDSSWCSSIE---AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
             + +   S+     Q A        +R  +  ++S +  +    +  P   L      D
Sbjct: 178 EAEFAEWQSLSLDRDQAAVQTQGALRSRESIAESISDIAQQAQSLDQLPSGLLVPPLGQD 237

Query: 234 GKFDQSFCALKEEYAKKLFDGRKM 257
           G  +    AL++    KL   R+ 
Sbjct: 238 G-LETVHDALEQLVQNKLERLREQ 260


>gi|218690733|ref|YP_002398945.1| recombination and repair protein [Escherichia coli ED1a]
 gi|218428297|emb|CAR09074.1| recombination and repair protein [Escherichia coli ED1a]
 gi|320194778|gb|EFW69407.1| DNA repair protein RecN [Escherichia coli WV_060327]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 82/240 (34%), Gaps = 32/240 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       ++  LD         +       +  M  R  L
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTK--PEHQKFLLD--------GYANETSQLQE-MTARYHL 165

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             +   D +    +  + A    ++   +++ +N  +    E+ ++ +  + +L+ +G L
Sbjct: 166 WHQSCRDLAHHQQLSQERA-ARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQL 223


>gi|206560322|ref|YP_002231086.1| hypothetical protein BCAL1958 [Burkholderia cenocepacia J2315]
 gi|198036363|emb|CAR52259.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
          Length = 391

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +K L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 3  ALKTLAIANYRSLRELIVPLAA-LNVVTGPNGSGKSSVYRALRLLA 47


>gi|74197310|dbj|BAC34200.2| unnamed protein product [Mus musculus]
 gi|74213748|dbj|BAC40087.2| unnamed protein product [Mus musculus]
          Length = 327

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 54  IESIQLRNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLK 113

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
              + G  S              ADISI L  R D + R     D ++
Sbjct: 114 GFVKAGQNS--------------ADISITLRNRGDDAFRANVYGDSIV 147


>gi|332158332|ref|YP_004423611.1| hypothetical protein PNA2_0691 [Pyrococcus sp. NA2]
 gi|331033795|gb|AEC51607.1| hypothetical protein PNA2_0691 [Pyrococcus sp. NA2]
          Length = 319

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 24/190 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + I  FR    L L    Q  + VG N  GK+ +LEA++ L+ GR       ++V  
Sbjct: 10  IRVITIEGFRGIKRLELSELGQVNVIVGKNNSGKSTVLEALA-LTLGRENFINVLSEVVI 68

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL- 125
                 +     ++ +  +   S ++ T + R     + + V  R  D   K  ++S+  
Sbjct: 69  W---RGWYGGQSIDDLFYMDGNSFRITTNEARLEALKKDSIVEFRFGDNSIKIDKLSFNA 125

Query: 126 -VPSMDRIFSG-----LSMERRRFLDRMVFAIDPRHRRRMIDF---ERLMRGRNRLLTEG 176
             PSM     G       +  RRF           +   +  +    R++R    +L E 
Sbjct: 126 RAPSMPFFLKGNFEFLTPLTFRRF----------GYVESLYSYAYERRVIRESINILNEA 175

Query: 177 YFDSSWCSSI 186
           Y +    S +
Sbjct: 176 YPEVEGFSPL 185


>gi|326780713|ref|ZP_08239978.1| putative exonuclease [Streptomyces cf. griseus XylebKG-1]
 gi|326661046|gb|EGE45892.1| putative exonuclease [Streptomyces cf. griseus XylebKG-1]
          Length = 1020

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 104/281 (37%), Gaps = 29/281 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDA----QHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           +++  L+I+ F  + A+  + FDA       +  G  G GKT++L+A+ F   G   G R
Sbjct: 1   MRLHRLSITAFGPFGATQEVDFDALSSAGLFLLHGPTGAGKTSVLDAVCFALYGAVPGAR 60

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDEL 116
           ++  A +    +P+   T  ++E   G   + +       R  +  + +   + +    L
Sbjct: 61  QSPGASLRSDHAPADLPTEVQLELTVGGRRLEVTRSPAQPRPKK--RGDGFTLEKAQSRL 118

Query: 117 NKHLR---ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR----GR 169
             H        L  S   I      E  R +                DF R +R     R
Sbjct: 119 RGHDPERGWQALSKSHQEI----GEELTRLIGMSRDQFCQVVLLPQGDFARFLRSDAEAR 174

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---GVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            +LL    FD+   +++E ++AEL   G     A  E I AL+  I +           +
Sbjct: 175 GKLLGRL-FDTRRFAAVEERLAELRRGGEARVTAADERILALAQRIAQAAGPAGAEATPI 233

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           +      G  +    A+ E  A      R+   ++ R L G
Sbjct: 234 AARPGEPGLAE----AVLEWAAVARSTARERLDIAHRVLTG 270


>gi|240126328|ref|ZP_04739214.1| hypothetical protein NgonSK_09014 [Neisseria gonorrhoeae
          SK-92-679]
 gi|268684913|ref|ZP_06151775.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|268625197|gb|EEZ57597.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +      I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESAKVLNSSIGSLTRQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAIALLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +   ++V ++  Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCKLVKEMSVQT 1115


>gi|237715179|ref|ZP_04545660.1| DNA repair protein recN [Bacteroides sp. D1]
 gi|262408868|ref|ZP_06085413.1| DNA repair protein RecN [Bacteroides sp. 2_1_22]
 gi|294647644|ref|ZP_06725211.1| DNA repair protein RecN [Bacteroides ovatus SD CC 2a]
 gi|294810717|ref|ZP_06769365.1| DNA repair protein RecN [Bacteroides xylanisolvens SD CC 1b]
 gi|229445012|gb|EEO50803.1| DNA repair protein recN [Bacteroides sp. D1]
 gi|262353079|gb|EEZ02174.1| DNA repair protein RecN [Bacteroides sp. 2_1_22]
 gi|292637010|gb|EFF55461.1| DNA repair protein RecN [Bacteroides ovatus SD CC 2a]
 gi|294442050|gb|EFG10869.1| DNA repair protein RecN [Bacteroides xylanisolvens SD CC 1b]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 67/201 (33%), Gaps = 17/201 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  RR +  
Sbjct: 2   LRSLYIQNYALIEKLDISFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRRGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            +   R   +      F     +E   +  ++ E +     R   IND       + EL 
Sbjct: 62  CIIEARFDIAAYGMRPFFEENELEYDEECILRREVQASGKSRAF-INDTPASLVQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMV---FAIDPRHRRR--MIDFERLMRGRNRL 172
           + L           +       +   LD +     A++  H R       ER +     L
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLDILAHNDAALEKYHLRYGEWKQTERELAELMSL 178

Query: 173 LTEGYFDSSWCSSIEAQMAEL 193
             +   D  +      Q+ E 
Sbjct: 179 AEKSRSDEDYIRFQLEQLEEA 199


>gi|156543634|ref|XP_001604641.1| PREDICTED: similar to KIAA0594 protein [Nasonia vitripennis]
          Length = 1059

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 57/192 (29%), Gaps = 12/192 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           I  + +  F  Y  + +       + +G NG GK+ I+ AI  L  G       R     
Sbjct: 16  ITRIAMKNFVTYDEVVVKPGKNLNLIIGPNGTGKSTIVSAI-VLGLGGSPSVIGRAPQIG 74

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              + G  +         G      ++ ++    + +   +       + + +L +   I
Sbjct: 75  HYVKSGEQNATIEIDLQNGPNKFVTVT-RMFNLQNHTTWMVNKKGATSKQITDLMRTFNI 133

Query: 123 SW-----LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
                   +P    +        +   +      DP+     +   + +R +   L E  
Sbjct: 134 QVDNLCQFLPQDKVVEFANMSPPKLLEETERSVGDPKLLDNHLKL-KALRTQQADLEEDL 192

Query: 178 FDSSWCSSIEAQ 189
              +     E Q
Sbjct: 193 EKKTRLQDREKQ 204


>gi|115378867|ref|ZP_01466005.1| hypothetical protein STIAU_4105 [Stigmatella aurantiaca DW4/3-1]
 gi|310820059|ref|YP_003952417.1| hypothetical protein STAUR_2792 [Stigmatella aurantiaca DW4/3-1]
 gi|115364106|gb|EAU63203.1| hypothetical protein STIAU_4105 [Stigmatella aurantiaca DW4/3-1]
 gi|309393131|gb|ADO70590.1| conserved uncharacterized protein [Stigmatella aurantiaca
          DW4/3-1]
          Length = 439

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 2  TNRIKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAIS 48
           + +K+  L + ++R       L+F     +F+G+NG G+T +LE +S
Sbjct: 21 PSFMKLTRLKVHQYRAVPPGTELLFGPSLNLFLGENGTGRTMLLELLS 68


>gi|325206603|gb|ADZ02056.1| chromosome segregation protein SMC [Neisseria meningitidis
          M04-240196]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|317164767|gb|ADV08308.1| hypothetical protein NGTW08_1343 [Neisseria gonorrhoeae
          TCDC-NG08107]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +      I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESAKVLNSSIGSLTRQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAIALLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +   ++V ++  Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCKLVKEMSVQT 1115


>gi|307304714|ref|ZP_07584464.1| SMC domain protein [Shewanella baltica BA175]
 gi|306912116|gb|EFN42540.1| SMC domain protein [Shewanella baltica BA175]
          Length = 390

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I  +R+   + L    Q  +  G NG GK+N+ +A+  L+
Sbjct: 2  LTTLAIFNYRSLREIVLPLG-QLNLITGANGSGKSNLYKALRLLA 45


>gi|240128717|ref|ZP_04741378.1| hypothetical protein NgonS_08832 [Neisseria gonorrhoeae
          SK-93-1035]
 gi|268687103|ref|ZP_06153965.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268627387|gb|EEZ59787.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +      I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESAKVLNSSIGSLTRQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAIALLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLAAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +   ++V ++  Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCKLVKEMSVQT 1115


>gi|240124052|ref|ZP_04737008.1| hypothetical protein NgonP_08948 [Neisseria gonorrhoeae PID332]
 gi|268682678|ref|ZP_06149540.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268622962|gb|EEZ55362.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +      I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESAKVLNSSIGSLTRQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAIALLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +   ++V ++  Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCKLVKEMSVQT 1115


>gi|240118508|ref|ZP_04732570.1| hypothetical protein NgonPID_08607 [Neisseria gonorrhoeae PID1]
 gi|268604217|ref|ZP_06138384.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268588348|gb|EEZ53024.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +      I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESAKVLNSSIGSLTRQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAIALLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +   ++V ++  Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCKLVKEMSVQT 1115


>gi|261378219|ref|ZP_05982792.1| SMC family protein [Neisseria cinerea ATCC 14685]
 gi|269145294|gb|EEZ71712.1| SMC family protein [Neisseria cinerea ATCC 14685]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   KI  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKILNSSIGSLTQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|157156101|ref|YP_001464365.1| hypothetical protein EcE24377A_3363 [Escherichia coli E24377A]
 gi|157078131|gb|ABV17839.1| hypothetical protein EcE24377A_3363 [Escherichia coli E24377A]
          Length = 607

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 62/370 (16%), Positives = 119/370 (32%), Gaps = 42/370 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + IS FR  +++ +    + T+ +G N  GKT++++A+  L+ G   R  S  D   
Sbjct: 5   IDKVRISGFRGISNIEITL-PRVTVLLGQNNAGKTSVIKAMQ-LAMGDYSRYLSDEDF-H 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           IG          V+      D   +++   +   +         ++  E +    +    
Sbjct: 62  IGEDEKRQEAITVDLRFIAVDGETRIKEFSENWQQVFG-----EKIQSEPDGSQFVCIRT 116

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
            +      G  +  R  LD     I P  R    D    +  +NRL     F       I
Sbjct: 117 TAKPDRVKGGYVVERFHLD-----IWPE-RMNWQDAR--VNNKNRLGKRLEFVPFI--PI 166

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           +AQ           +   +  + S + EY  K+     ++      +           + 
Sbjct: 167 DAQRDIHSE--LKEKSSFVGRVLSSV-EYDDKDVAELERMVAEINKEAIEKSEPLKRLKN 223

Query: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDL-----IVDYCDKAITIAHGS---TG---EQKVV 295
           +   L    +    S +T + P    +                +  S    G        
Sbjct: 224 HLDNLNQSFE---GSGQTELTPFPKKIRDLSKRFSVNFGESDKSSFSMEYHGMGTRSWAS 280

Query: 296 LVGIFLAHARLISNTTGFA-----PILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGT 350
           ++ +  A   L+            PI+  +E  AHL  + +  L+R + D   Q+ ++ T
Sbjct: 281 MLTVK-AFTELLVKNHEEEAEPFFPIMAAEEPEAHLHPNAQRTLYRQLVDAPGQVIIS-T 338

Query: 351 DKSVFDSLNE 360
                  L E
Sbjct: 339 HSPYIAGLAE 348


>gi|149369743|ref|ZP_01889595.1| possible ATPase involved in DNA repair [unidentified eubacterium
          SCB49]
 gi|149357170|gb|EDM45725.1| possible ATPase involved in DNA repair [unidentified eubacterium
          SCB49]
          Length = 701

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEFRNY-ASLRLVF----DAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K+  + I+ FR Y   + +      D    +  G NG GKTN L +I +   GR
Sbjct: 1  MKLSEIKINNFRQYYKEVNIDLTTNSDENIILIGGKNGYGKTNFLISIVWCLYGR 55


>gi|152996589|ref|YP_001341424.1| SMC domain-containing protein [Marinomonas sp. MWYL1]
 gi|150837513|gb|ABR71489.1| SMC domain protein [Marinomonas sp. MWYL1]
          Length = 263

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 5  IKIKFLNISE--FRN--------YASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + +K + I    +RN        Y     L F+   T  VG+NG GK+ +LEA+S  S
Sbjct: 1  MYLKSVYIKNDEYRNGFPFHLEVYRKFKELEFNNNVTFLVGENGSGKSTLLEALSINS 58


>gi|114766760|ref|ZP_01445697.1| DNA repair protein RecN [Pelagibaca bermudensis HTCC2601]
 gi|114541017|gb|EAU44074.1| DNA repair protein RecN [Roseovarius sp. HTCC2601]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I +      L L F     +  G+ G GK+ +L+++ F+   RG      A++ R
Sbjct: 5  LRALEIRDMLIIDRLDLAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RAELVR 59

Query: 67 IGSPSFFSTFA 77
           G+     T  
Sbjct: 60 SGAAQGEVTAV 70


>gi|159184469|ref|NP_353825.2| chromosome segregation protein [Agrobacterium tumefaciens str. C58]
 gi|159139780|gb|AAK86610.2| chromosome segregation protein [Agrobacterium tumefaciens str. C58]
          Length = 1155

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFNKLRVVGFKSFVEPSEFIIEPGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDRS-VRCLQINDV 108
             DV   G     + +       ++  +  A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVGLYLDNSDRTAPAAFNDADEIQVTRRIERENGSVYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        + +     RR+ L+
Sbjct: 121 EARAKDVQLLFADASTGARSPSMVGQGRIGELINAKPQARRQLLE 165


>gi|84500325|ref|ZP_00998591.1| SMC protein [Oceanicola batsensis HTCC2597]
 gi|84392259|gb|EAQ04527.1| SMC protein [Oceanicola batsensis HTCC2597]
          Length = 1151

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 1   MRFSKLRLTGFKSFVDPTDLLIHDGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             DV   G+ S     F      ++  E LA  +     + +   R  +      +    
Sbjct: 61  MEDVIFAGAASRPARNFAEVSLIIDNAERLAPAAFNDSDQIEIVRRITRDVGSAYKANSR 120

Query: 116 LNKHLRISWL---------VPSMDR------IFSGLSMERRRFLD 145
             +   I  L          P++ R      + +     RRR L+
Sbjct: 121 DVRARDIQMLFADASTGSQSPALVRQGQISELINAKPKARRRILE 165


>gi|238796721|ref|ZP_04640227.1| DNA repair protein recN [Yersinia mollaretii ATCC 43969]
 gi|238719452|gb|EEQ11262.1| DNA repair protein recN [Yersinia mollaretii ATCC 43969]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 83/277 (29%), Gaps = 34/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAIDALGLCLGSRS-----DGSMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E           L        R    IN   V +  
Sbjct: 57  LGATRADICARFSLADTPSARQWLENNHLDDSNECLLRRAIGTDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMI 160
           + EL +HL       +   +       +++ LD            +  + I  +  R + 
Sbjct: 117 LRELGQHLIQIHGQHAHQLLLR--PDHQKQLLDAYADQSTLLAEMKAAYQIWHQSCRALA 174

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKE 219
             ++    RN       +     +S   Q  E   + I   R+     L SL  + +Q  
Sbjct: 175 LHQQQSLERNARHELLQYQLKELNSFAPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL 234

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +       L+     K   +  A  +E    L +  +
Sbjct: 235 SDDEQNNILSQLYSAKHQLTELASMDEQFNNLLNMLE 271


>gi|296314914|ref|ZP_06864855.1| SMC family protein [Neisseria polysaccharea ATCC 43768]
 gi|296838099|gb|EFH22037.1| SMC family protein [Neisseria polysaccharea ATCC 43768]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+    +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNTSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|255065092|ref|ZP_05316947.1| SMC family protein [Neisseria sicca ATCC 29256]
 gi|255050513|gb|EET45977.1| SMC family protein [Neisseria sicca ATCC 29256]
          Length = 1160

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 79/218 (36%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGNLTQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     ++      D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKERFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|167553515|ref|ZP_02347264.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205322061|gb|EDZ09900.1| DNA repair protein RecN [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              P+        +  EG   +  ++ + D RS   +    V +  
Sbjct: 57  TGATRADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDPRHRRRMIDFERLMR 167
           + EL + L       +  ++      +++  LD       +      H +      R + 
Sbjct: 117 LRELGQLLIQIHGQHAHQQLTK--PEQQKSLLDSYANEAALAQQMAAHYQLWHQSCRDLA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
              +   E    +        Q+ EL
Sbjct: 175 HHQQQSQERAARAELLQY---QLKEL 197


>gi|220931482|ref|YP_002508390.1| hypothetical protein Hore_06380 [Halothermothrix orenii H 168]
 gi|219992792|gb|ACL69395.1| hypothetical protein Hore_06380 [Halothermothrix orenii H 168]
          Length = 968

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 5   IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++IK L I +F  +   +L        +  G N  GKT  L  I +L  G   ++     
Sbjct: 1   MRIKSLYIKDFGIFREQKLEKIAPGMVVIGGPNRAGKTTFLNIIRYLWFGFPSKKTLPPA 60

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           + +    +  +        +   + +I +E +    +  ++ N   I+  +EL   
Sbjct: 61  LRKYEVEADIAL-------DNEDEYNIYVEGQAPPKITAIRANSDQIKSFEELVGV 109


>gi|325135865|gb|EGC58477.1| chromosome segregation protein SMC [Neisseria meningitidis M0579]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.2 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +    +
Sbjct: 1053 GKKNSTIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCNL 1107

Query: 338  VTDIGSQI 345
            V ++ +Q 
Sbjct: 1108 VKEMSAQT 1115


>gi|325133939|gb|EGC56595.1| chromosome segregation protein SMC [Neisseria meningitidis
          M13399]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|316985405|gb|EFV64353.1| chromosome segregation protein SMC [Neisseria meningitidis
          H44/76]
 gi|325200767|gb|ADY96222.1| chromosome segregation protein SMC [Neisseria meningitidis
          H44/76]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.2 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +   R+
Sbjct: 1053 GKKNSTIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCRL 1107

Query: 338  VTDIGSQI 345
            V ++ +Q 
Sbjct: 1108 VKEMSAQT 1115


>gi|310658856|ref|YP_003936577.1| hypothetical protein CLOST_1552 [Clostridium sticklandii DSM 519]
 gi|308825634|emb|CBH21672.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 644

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 9/124 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS---Y 61
           +K+  L +  F+    L L  D +     G+NG GKT I +A  +L   +  + +S    
Sbjct: 1   MKLINLRLRNFKGIKDLSLEIDGKDLNVYGENGTGKTTIFDAFMWLLFDKDSQNSSQFNV 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
             +  +G P+       +  +E        +E +     +  +      +   EL  H  
Sbjct: 61  KPLDILGEPNHMMEHEVIAVIELDGKH---VELQKTYKEKWTKKRG---QADSELTGHTT 114

Query: 122 ISWL 125
             ++
Sbjct: 115 EYFI 118


>gi|289669575|ref|ZP_06490650.1| chromosome segregation protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1167

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-----------INDV 108
             DV   GS +    + A VE +   +D +I  E      +   +           +N  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDHTISGEFASFNEISVRRLVSRDGTSAYYLNGT 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 KCRRRD 126


>gi|254712944|ref|ZP_05174755.1| chromosome segregation protein SMC [Brucella ceti M644/93/1]
 gi|254716702|ref|ZP_05178513.1| chromosome segregation protein SMC [Brucella ceti M13/05/1]
 gi|261218508|ref|ZP_05932789.1| chromosome segregation protein SMC [Brucella ceti M13/05/1]
 gi|261320642|ref|ZP_05959839.1| chromosome segregation protein SMC [Brucella ceti M644/93/1]
 gi|260923597|gb|EEX90165.1| chromosome segregation protein SMC [Brucella ceti M13/05/1]
 gi|261293332|gb|EEX96828.1| chromosome segregation protein SMC [Brucella ceti M644/93/1]
          Length = 1152

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSRLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|254671447|emb|CBA08972.1| putative chromosome partition protein [Neisseria meningitidis
          alpha153]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.2 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +    +
Sbjct: 1053 GKKNSTIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCNL 1107

Query: 338  VTDIGSQI 345
            V ++ +Q 
Sbjct: 1108 VKEMSAQT 1115


>gi|254804429|ref|YP_003082650.1| chromosome segregation protein [Neisseria meningitidis alpha14]
 gi|254667971|emb|CBA04250.1| chromosome segregation protein [Neisseria meningitidis alpha14]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.2 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +    +
Sbjct: 1053 GKKNSTIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCNL 1107

Query: 338  VTDIGSQI 345
            V ++ +Q 
Sbjct: 1108 VKEMSAQT 1115


>gi|261365297|ref|ZP_05978180.1| SMC family protein [Neisseria mucosa ATCC 25996]
 gi|288566221|gb|EFC87781.1| SMC family protein [Neisseria mucosa ATCC 25996]
          Length = 1160

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLTQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAISLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|217970372|ref|YP_002355606.1| SMC domain protein [Thauera sp. MZ1T]
 gi|217507699|gb|ACK54710.1| SMC domain protein [Thauera sp. MZ1T]
          Length = 930

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 32/80 (40%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           IK L +  +  +    L  DAQ    VG NG GKT +L+A+  L   R   +  +    
Sbjct: 3  HIKTLELVHWDFWRRFTLPLDAQIITIVGPNGSGKTTLLDALRTLFALRCSGKRDFRRYV 62

Query: 66 RIGSPSFFSTFARVEGMEGL 85
          R    SF    A V    G 
Sbjct: 63 RRADRSFAWIRAVVANQPGH 82



 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 69/213 (32%), Gaps = 40/213 (18%)

Query: 141 RRFLDRMVFAIDPRHRRRMIDF--ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN 198
           RR LD   +  DP           +  +R R+ L  +GY  ++   S            +
Sbjct: 715 RRHLDEGEWITDPAVLVVRDRLGADVALRERDYLNRQGYCTTARLHS------------D 762

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
            AR   I  L + + +Y +         +L    +   D     L+ +       G ++ 
Sbjct: 763 NARAAYIAKLRATVRQYAKNLK------ALGELANVSVDCPTPHLENDDLSLAQAGLEV- 815

Query: 259 SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ--KVVLVGIFLAHARLISNTTGFAPI 316
                      R D         +     S G+Q  K +++        L+ + +     
Sbjct: 816 -----------RFDFD-RKGAVGLNDGEASGGQQVMKSLIL-----LIGLLMDESRPGGF 858

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           + +DE  AHLD    + +   +    +Q  +T 
Sbjct: 859 VFIDEPFAHLDVANIDRVGTFLRATRAQYLITT 891


>gi|325202666|gb|ADY98120.1| chromosome segregation protein SMC [Neisseria meningitidis
          M01-240149]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQTAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMVRPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|325141757|gb|EGC64209.1| chromosome segregation protein SMC [Neisseria meningitidis
          961-5945]
 gi|325197757|gb|ADY93213.1| chromosome segregation protein SMC [Neisseria meningitidis G2136]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITILEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|325129675|gb|EGC52489.1| chromosome segregation protein SMC [Neisseria meningitidis
          OX99.30304]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITILEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|312622197|ref|YP_004023810.1| SMC domain-containing protein [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202664|gb|ADQ45991.1| SMC domain protein [Caldicellulosiruptor kronotskyensis 2002]
          Length = 631

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 54/413 (13%), Positives = 133/413 (32%), Gaps = 60/413 (14%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
            ++ I  + +  FR +    +  +   T+ VG+N  GK++ L+    +       +    
Sbjct: 2   GKVYISKVVVENFRCFKGTEIGLEEDLTLIVGENDSGKSSFLDVFRIIFSVNNKAKKQDK 61

Query: 63  DVTRIGSPSFFSTFARVEGMEG---LADISIKLETRDDRSVRCLQ--INDVV----IRVV 113
            +  I    FF   +  E  E       I I++E  +   V  ++  +N+       +  
Sbjct: 62  KL-EIEEGDFFVRKSEHEKNESDFINEPIRIRIELSNGDVVEYIKKDLNEDPLLCLCKST 120

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMER-RRFLDRMVFAI-DPRHRRRMI-DFERLMRGRN 170
           DE  ++++     P    + + LS E+ ++ + ++   I        +   F  ++  + 
Sbjct: 121 DEFREYIQ----NPD---LVNNLSEEKLKKVISQLGGNIGSRSSLETLRKKFSDILEEKK 173

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF--------- 221
             +      S     ++  + E    + +      N +  ++ +   +E+          
Sbjct: 174 EEIINKEKISVEIDRLDDYLYEYFDFLYLDGKTFYN-VDDILYKLYLEESLMGILDEPIK 232

Query: 222 -PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG--------------RKMDSMSRRTLI 266
                  ++  ++GK +      ++E  + L                  ++D + +    
Sbjct: 233 IGEYDKKISEIINGKIENIIKDKEKEINELLLKDIKNFLPEVKRISLLHELDGIEKNISK 292

Query: 267 GPHRSDLIVDYCDKAITIAHGST----GEQKVVLVG-IFLAHARLISNTTGFAPILLLDE 321
                 + V   +         T    G ++ + +  +  A             + L DE
Sbjct: 293 SI---KIKVFLNEDNNDQGIMLTKKGDGTKRRMTLALLKYAE----KKDFKKPILYLFDE 345

Query: 322 ISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDS-LNETAKFMRISNHQ 371
              HL    +  L  I+  +    QI MT     + +  L +        N +
Sbjct: 346 PDTHLHVRAQYELMSIIEKLKMDNQIVMTTHSPFIINYVLPKKIVLFEKINGE 398


>gi|309379614|emb|CBX21785.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.2 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +    +
Sbjct: 1053 GKKNSTIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCNL 1107

Query: 338  VTDIGSQI 345
            V ++ +Q 
Sbjct: 1108 VKEMSAQT 1115


>gi|255316758|ref|ZP_05358341.1| putative phosphoesterase [Clostridium difficile QCD-76w55]
          Length = 864

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 8/97 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS--FLSPGRGFRRASYADV 64
           I  L I  F  +      F     +  G +G GK+ +L AI   +    +  R    +  
Sbjct: 360 ITELEIINFACFKHAVFEFSEGLNVVSGVSGQGKSAVLRAIREVYDCYIKNPRNHILS-- 417

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101
                  FF     +     ++ I    E ++    +
Sbjct: 418 ----GEDFFKITLYLSNGFVISRIVENNEDKNGNKRK 450


>gi|47214763|emb|CAG01298.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1156

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/271 (17%), Positives = 82/271 (30%), Gaps = 43/271 (15%)

Query: 12  ISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADVTRIG 68
           I  FR+Y    +   F  +  + VG NG GK+N   AI   LS      R          
Sbjct: 4   IQGFRSYRDQTVVDPFSPKPNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP--------- 54

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV-- 126
                   A +    G   IS  +E   D S   L I+   + +   +       +L   
Sbjct: 55  ----EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKK 110

Query: 127 ----PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNRLLTEGYF 178
                 +  +       R           +P +  +     ++       R +LL E   
Sbjct: 111 MVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLKLLREVAG 160

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
              +    + +   L  +    R + IN L   I E +        +L+     D     
Sbjct: 161 TRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEDEKEELAQYQKWDKMRRA 218

Query: 239 SFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
               +   Y ++L + R    +  ++R   G
Sbjct: 219 LEYTI---YNQELNETRAKLDELSTKRETCG 246



 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QI 345
            S G++ +V + +  A           AP  L DEI   LD   R A+  ++ ++    Q 
Sbjct: 1028 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIVELAGHAQF 1082

Query: 346  FMTGTDKSVFDS 357
              T     + +S
Sbjct: 1083 ITTTFRPELLES 1094


>gi|325207588|gb|ADZ03040.1| chromosome segregation protein SMC [Neisseria meningitidis
          NZ-05/33]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQTAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|319637793|ref|ZP_07992559.1| hypothetical protein HMPREF0604_00182 [Neisseria mucosa C102]
 gi|317400948|gb|EFV81603.1| hypothetical protein HMPREF0604_00182 [Neisseria mucosa C102]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.6 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDTLEA-LAKESPKVLNSSIGSLIQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|304410617|ref|ZP_07392235.1| SMC domain protein [Shewanella baltica OS183]
 gi|304351101|gb|EFM15501.1| SMC domain protein [Shewanella baltica OS183]
          Length = 390

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I  +R+   + L    Q  +  G NG GK+N+ +A+  L+
Sbjct: 2  LTTLAIFNYRSLREIVLPLG-QLNLITGANGSGKSNLYKALRLLA 45


>gi|304388228|ref|ZP_07370348.1| SMC structural maintenance of chromosomes partitioning protein
          [Neisseria meningitidis ATCC 13091]
 gi|304337755|gb|EFM03904.1| SMC structural maintenance of chromosomes partitioning protein
          [Neisseria meningitidis ATCC 13091]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITILEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|212636987|ref|YP_002313512.1| ATPase [Shewanella piezotolerans WP3]
 gi|212558471|gb|ACJ30925.1| ATPase, putative [Shewanella piezotolerans WP3]
          Length = 393

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 22/188 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ +R+   + +   AQ  +  G NG GK+N+ +A+  L+            +  
Sbjct: 2   LTALAINNYRSLRDITIPL-AQLNLVTGANGSGKSNLYKALRLLAQTAQ--GGVVNALAL 58

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G    SF++      G E L+   +  E   + +VR       +    DE +  + +  
Sbjct: 59  EGGLDSSFWA------GPETLSRAMLAGEVPVEATVRQEVKRLKLGFSSDEFSYLIELGL 112

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSW 182
             P    +F      +R  +  +  A  P           L+  R+ L+    G    + 
Sbjct: 113 PKPDSTTLFGLDPQIKREAI-WVGNAYRPS--------TVLVERRSALVKSRTGKDKPAG 163

Query: 183 CSSIEAQM 190
             ++   M
Sbjct: 164 WQTLNVHM 171


>gi|163794973|ref|ZP_02188942.1| Chromosome segregation ATPase [alpha proteobacterium BAL199]
 gi|159179792|gb|EDP64319.1| Chromosome segregation ATPase [alpha proteobacterium BAL199]
          Length = 1156

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 76/237 (32%), Gaps = 41/237 (17%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +    L ++ F+++     ++ +   T  VG NG GK+N++EA+ ++   S  +  R   
Sbjct: 1   MHFSKLRLAGFKSFVDPTEVIIEPGLTGVVGPNGCGKSNLVEALRWVMGESSAKQMRGGG 60

Query: 61  YADVTRIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCL-----------QINDV 108
             D+   G+ +      A V  +    D     +  D   +  +           ++N  
Sbjct: 61  MDDIIFGGTTARPKRNMAEVSLLVANEDRRAPAQFNDSEELEIIRRIERERGSHYRVNGR 120

Query: 109 VIRVVDE------------------LNKHLRISWLVPSMDRIFSGLSME------RRRFL 144
            +R  D                     K   I    P   RI    +        RR   
Sbjct: 121 EVRARDVQLLFADAATGARSAGLVSQGKIGSIVQAKPQDRRILLEEAANIRGLHSRRHEA 180

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
           +  + A +     R+ D  + + G+   L      +    ++  Q+      +   R
Sbjct: 181 ELRLKAAEQN-LERLDDVMKALEGQRHALRRQAKQAQRYRALSEQIRRAESIVLHRR 236


>gi|220930670|ref|YP_002507579.1| SMC domain protein [Clostridium cellulolyticum H10]
 gi|220000998|gb|ACL77599.1| SMC domain protein [Clostridium cellulolyticum H10]
          Length = 433

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 6  KIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          KI  L I   +   ++++       TI  G NG GKT+++++I++   G  FR +S   
Sbjct: 5  KINKLEIENVKRVKAVKIEPNSNGLTIVGGKNGQGKTSVIDSIAWALGGEKFRPSSATR 63


>gi|121582858|ref|YP_973300.1| Fis family transcriptional regulator [Polaromonas
          naphthalenivorans CJ2]
 gi|120596120|gb|ABM39558.1| transcriptional regulator, Fis family [Polaromonas
          naphthalenivorans CJ2]
          Length = 645

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61
          +K+  L IS F+++  +   + F+A  T  +G NG GKT +L+A++         RR   
Sbjct: 1  MKLTRLRISNFQSFGPVPTPIDFEA-MTFLLGPNGAGKTVVLQALARLFGFDPSLRRVRR 59

Query: 62 AD 63
          +D
Sbjct: 60 SD 61


>gi|71018685|ref|XP_759573.1| hypothetical protein UM03426.1 [Ustilago maydis 521]
 gi|46099331|gb|EAK84564.1| hypothetical protein UM03426.1 [Ustilago maydis 521]
          Length = 1276

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 4/114 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF--RRASYAD 63
           I+ + +S F  Y S+         +  G NG GK++I  AI+  L        R ++   
Sbjct: 221 IRRIALSNFLTYDSVEFRVGPYLNLICGPNGTGKSSIACAIALGLGGHPSLLGRASNLGS 280

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
             + G    +     ++   G ++  I+       +     ++       D L 
Sbjct: 281 FVKRGETEGW-IEIELQASSGSSNPVIRRTITTASNKSDWYLDGRSTTKSDVLA 333


>gi|117926499|ref|YP_867116.1| SMC domain-containing protein [Magnetococcus sp. MC-1]
 gi|117610255|gb|ABK45710.1| SMC domain protein [Magnetococcus sp. MC-1]
          Length = 394

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 28/46 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I+ + +  +R +  +++   ++ T+ VG NG GK+   + +SF+
Sbjct: 1  MRIESIEVKNYRVFEDIKIDRLSRVTVLVGANGSGKSTFFDILSFI 46


>gi|325922525|ref|ZP_08184286.1| condensin subunit Smc [Xanthomonas gardneri ATCC 19865]
 gi|325546990|gb|EGD18083.1| condensin subunit Smc [Xanthomonas gardneri ATCC 19865]
          Length = 1167

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 86/290 (29%), Gaps = 46/290 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-----------INDV 108
             DV   GS +    + A VE +   +D +I  E      +   +           +N  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDHTITGEFASFNEISVKRLVSRDGTSAYYLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI-------DPRHRRRMID 161
             R  D +      + L P    I              M+  I          +      
Sbjct: 121 KCRRRD-ITDLFLGTGLGPRSYSIIEQG----------MISQIIEARPEDLRVYLEEAAG 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
             +    R    T              ++ +L  +I       +  L     +  Q +  
Sbjct: 170 ISKYKERRKETETRIRHTRENLD----RLGDLREEITKQ----LAHLQRQARQAEQYQAL 221

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
              +       D ++        +   + L +    +    + LI   R 
Sbjct: 222 QEER----RIKDAEWKALEYRGLDGRLQGLREKLNQEETRLQQLIAEQRD 267


>gi|323528014|ref|YP_004230166.1| SMC domain-containing protein [Burkholderia sp. CCGE1001]
 gi|323385016|gb|ADX57106.1| SMC domain protein [Burkholderia sp. CCGE1001]
          Length = 874

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 77/188 (40%), Gaps = 4/188 (2%)

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL-TGFLD 233
           E +      + + +Q+  +G      R+  ++A          + +     LSL    L 
Sbjct: 675 EQHERQVRIAHLRSQLETVGASGLGERLAALDAKIEQATRRKDELSLRAGALSLLDEVLV 734

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            + D +   L+    ++L    K         +G   S   +D   +A T+   S G ++
Sbjct: 735 AERDAAVAQLRAPLTERLGHYLKRIFPQSTIALGDDLSPATLDRYGRADTLDALSFGTRE 794

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTD 351
            + +   LA+A L+   +G   +L+LD+ + H D  +R+A+ R + D  +  QI +    
Sbjct: 795 QLGILTRLAYADLLK-ASGRPTLLMLDDAAVHTDAGRRDAIKRALIDAAARHQILVFTCH 853

Query: 352 KSVFDSLN 359
             ++D L 
Sbjct: 854 PELWDDLG 861



 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +K++ + I EF+ +              +FVG N  GK+ I EA+  +   R ++ +   
Sbjct: 1  MKLQSIAIQEFKQFTGRLFIDDLQPGLNLFVGPNEAGKSTIAEAVRAVFLER-YKASHLK 59

Query: 63 DVTRIGSPSF 72
          D+   G  S 
Sbjct: 60 DLLPWGKASG 69


>gi|302530398|ref|ZP_07282740.1| SMC domain-containing protein [Streptomyces sp. AA4]
 gi|302439293|gb|EFL11109.1| SMC domain-containing protein [Streptomyces sp. AA4]
          Length = 384

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I  +R+   L L    Q T+ VG NG GK+++  A+  L+
Sbjct: 2  LTTLAIQNYRSLRDLVLPLS-QLTVIVGANGTGKSSLYRALRLLA 45


>gi|254671825|emb|CBA03959.1| putative chromosome partition protein [Neisseria meningitidis
          alpha275]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITILEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|241955237|ref|XP_002420339.1| condensin complex subunit, putative; structural maintenance of
           chromosomes protein, putative [Candida dubliniensis
           CD36]
 gi|223643681|emb|CAX41414.1| condensin complex subunit, putative [Candida dubliniensis CD36]
          Length = 1368

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            R+ I  L +++F++YA  ++   F +  +  VG NG GK+N+++++ F+   R    R+
Sbjct: 143 PRLIIDRLVLTDFKSYAGKKVIGPFHSSFSAVVGPNGSGKSNVIDSMLFVFGFRASKMRQ 202

Query: 59  ASYADVTR 66
              +++  
Sbjct: 203 GKLSELIH 210


>gi|121634340|ref|YP_974585.1| hypothetical protein NMC0484 [Neisseria meningitidis FAM18]
 gi|120866046|emb|CAM09784.1| hypothetical protein NMC0484 [Neisseria meningitidis FAM18]
 gi|325131781|gb|EGC54482.1| chromosome segregation protein SMC [Neisseria meningitidis M6190]
 gi|325137671|gb|EGC60248.1| chromosome segregation protein SMC [Neisseria meningitidis
          ES14902]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.2 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITILEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|146310135|ref|YP_001175209.1| SMC domain-containing protein [Enterobacter sp. 638]
 gi|145317011|gb|ABP59158.1| SMC domain protein [Enterobacter sp. 638]
          Length = 666

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 103/288 (35%), Gaps = 36/288 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPG 53
           + IK L +  FR +     +    +            +F G NG GKT+IL AI     G
Sbjct: 1   MLIKQLVLRNFRVFNGTHVIDLAPRKRQNDDNSRPIVLFGGLNGAGKTSILSAIRLALYG 60

Query: 54  RGFRRASYAD---------VTRIGSPSFFS-TFARVEGMEGLADISIKLETRDDRSVRCL 103
           R     +            +   GS +    + A +E +        + E    RS +  
Sbjct: 61  RLAFGPATQQQEYVEELSALVHNGSTTGERPSEASIELVFTYNKGGHEAEFTVTRSWKKG 120

Query: 104 QINDVVIRVVDELNKHL---RISWLVPSMD-----RIFSGLSMERRRFLDRMVFAIDPRH 155
           + + + ++   +L + L   +    +  +       +F     +     +     I    
Sbjct: 121 KKDQLSLQQDGQLLEELDYDQCQGFLNELIPHGIADLFFFDGEKIAELAEDDSGNILRTA 180

Query: 156 RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
            RR++  + + + RN L+       S      +Q+A    +      E +   +    + 
Sbjct: 181 VRRLLGLDLISKLRNDLMIFVKRQQS------SQLAGSQQQKLAELEEQVKQFAFQTEQI 234

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK-KLFDGRKMDSMSR 262
           ++K +F  +++ L      +++    A    +A+ K  + +K+D++ +
Sbjct: 235 LEKADFAKMRIDLLSKEINRYEALLNAQGGAFAQTKAQEKQKVDTLLK 282



 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 33/233 (14%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM---- 204
           +     +R ++ + E  +      +     D       E ++ EL  K    R E     
Sbjct: 397 WQRFDLYRHQLAEVEEQLEQAAANIARAPEDDQLFDIFE-KLRELDRKRESKRQEYRSLL 455

Query: 205 -----INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR---- 255
                   L       VQK +    +            Q    L + Y++ L   R    
Sbjct: 456 EEAKQTKQLQLDCARQVQKTH-DLARNQHNSDSAFNNAQETINLLDRYSELLTQARVKTL 514

Query: 256 ------------KMDSMSRRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLA 302
                       + + +     I P   D+ +   + ++      S GE+++  + I   
Sbjct: 515 SANFEGAYRKLARKEDLQLNAHINPETFDVELVDENASVINRKLLSAGEKQIYAIAI--- 571

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
               ++ T+G    +++D     LD   R+ L          Q+ +  TD  V
Sbjct: 572 -LEALAKTSGRDLPVIIDTPLGRLDSQHRDKLINHYFPFASHQVVLLSTDTEV 623


>gi|25991997|gb|AAN77000.1| condensin subunit [Emericella nidulans]
          Length = 1179

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++Y    +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRITEIIIDGFKSYTVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDTAKSPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|24215021|ref|NP_712502.1| DNA repair protein RecN [Leptospira interrogans serovar Lai str.
          56601]
 gi|45657492|ref|YP_001578.1| DNA repair protein [Leptospira interrogans serovar Copenhageni
          str. Fiocruz L1-130]
 gi|24196069|gb|AAN49520.1|AE011402_1 DNA repair protein RecN [Leptospira interrogans serovar Lai str.
          56601]
 gi|45600731|gb|AAS70215.1| DNA repair protein [Leptospira interrogans serovar Copenhageni
          str. Fiocruz L1-130]
          Length = 568

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +K LNI +F       + F    T+  G+ G GK+ IL+AIS L  G+ 
Sbjct: 2  LKTLNIRDFALIEEACIDFQKGMTVITGETGAGKSLILDAISSLLGGKS 50


>gi|323188393|gb|EFZ73682.1| DNA repair protein RecN [Escherichia coli RN587/1]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 82/240 (34%), Gaps = 32/240 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDAPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       ++  LD         +       +  M  R  L
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTK--PEHQKFLLD--------GYANETSQLQE-MTARYHL 165

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             +   D +    +  + A    ++   +++ +N  +    E+ ++ +  + +L+ +G L
Sbjct: 166 WHQSCRDLAHHQQLSQERA-ARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQL 223


>gi|308388730|gb|ADO31050.1| hypothetical protein NMBB_0592 [Neisseria meningitidis alpha710]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +      I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLTRQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|294670151|ref|ZP_06735076.1| transcriptional regulator, GntR family [Neisseria elongata subsp.
          glycolytica ATCC 29315]
 gi|291308078|gb|EFE49321.1| transcriptional regulator, GntR family [Neisseria elongata subsp.
          glycolytica ATCC 29315]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLTQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|292486878|ref|YP_003529748.1| structural maintenance of chromosomes protein 3 [Erwinia amylovora
           CFBP1430]
 gi|292900725|ref|YP_003540094.1| DNA-binding protein [Erwinia amylovora ATCC 49946]
 gi|291200573|emb|CBJ47704.1| putative DNA-binding protein [Erwinia amylovora ATCC 49946]
 gi|291552295|emb|CBA19332.1| Structural maintenance of chromosomes protein 3 [Erwinia amylovora
           CFBP1430]
          Length = 666

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 31/232 (13%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           +     +R ++ + E  +      +     D       E ++ +L  +    R +    L
Sbjct: 397 WQHFDLYRNQLAEVELQLEQAAANIARAPEDDQLMDLFE-KLRDLDRQREAQRQKYCLFL 455

Query: 209 SSLIMEYVQKEN--------FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR----- 255
                   Q+ +           ++         K  Q    L + Y+  L   R     
Sbjct: 456 EQAKHTKQQQLDCVRQIQKAHDAVRYQHNYSSAFKNAQETINLLDRYSDVLTQARVKTLA 515

Query: 256 -----------KMDSMSRRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                      + + +     I P   D+ +   + ++      S GE+++  + I    
Sbjct: 516 TNFELAYRKLARKEDLQLSAHINPGTFDVELIDENGSVINRKLLSAGEKQIYAIAI---- 571

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
              ++ T+G    +++D     LD   R+ L      +   Q+ +  TD  V
Sbjct: 572 LEALAKTSGRDLPVIIDTPLGRLDSQHRDKLINHYFPEASHQVVLLSTDTEV 623



 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPG 53
          + IK L +  FR ++ +  +    +            +F G NG GKT+IL AI     G
Sbjct: 1  MLIKQLVLRNFRVFSGTHTIDLAPRKRLHDENPRPIVLFGGLNGAGKTSILSAIRLALYG 60

Query: 54 R 54
          R
Sbjct: 61 R 61


>gi|261393084|emb|CAX50681.1| SMC protein [Neisseria meningitidis 8013]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.6 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+    +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNTSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|242096806|ref|XP_002438893.1| hypothetical protein SORBIDRAFT_10g027780 [Sorghum bicolor]
 gi|241917116|gb|EER90260.1| hypothetical protein SORBIDRAFT_10g027780 [Sorghum bicolor]
          Length = 1057

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 7/110 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  Y  L      +  + VG NG GK++++ AI+    G      R +S   
Sbjct: 31  IVEIELFNFMTYDHLVCCPGPRLNLVVGPNGSGKSSLVCAIALGLAGDPNILGRASSVGA 90

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ-INDVVIRV 112
             + G     +   ++       D  I +  + D   +    +N   +  
Sbjct: 91  FVKRGE---VAGHVKISLRGETPDDKICVTRKIDTKNKSEWLLNGATVPK 137


>gi|239986741|ref|ZP_04707405.1| putative recombination and DNA repair protein [Streptomyces
           roseosporus NRRL 11379]
          Length = 581

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 49/246 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +   +
Sbjct: 7   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADPAL 56

Query: 65  TRIGSPSFFSTFARVEGMEGLA-------------DISIKLET---RDDRSVRCLQINDV 108
            R+G+ +      R+   EG A             D ++ +      + RS   L    V
Sbjct: 57  VRVGAKAA-VVEGRITVSEGDAAALRAEEAGAELDDGALLISRTVSAEGRSRAHLGGRSV 115

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRMIDFERLMR 167
            + V+ EL   L           +       +R  LDR     ++  H +    + R   
Sbjct: 116 PVGVLTELADELVAVHGQTDQQGLLK--PARQRGALDRYAGDGVEVPHAKYAAAYRR--- 170

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                            ++  ++ EL ++    R +  + L   + E    E  P   + 
Sbjct: 171 ---------------LRAVATELDELTIR-ARERAQEADLLRFGLNEVAAVEPLPGEDVE 214

Query: 228 LTGFLD 233
           L    +
Sbjct: 215 LAAEAE 220


>gi|162449223|ref|YP_001611590.1| putative ATPase [Sorangium cellulosum 'So ce 56']
 gi|161159805|emb|CAN91110.1| putative ATPase [Sorangium cellulosum 'So ce 56']
          Length = 428

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-SPGRGF 56
          +  + +  F+++    +      T+ VG N  GK+N+ +A  FL   GRG+
Sbjct: 2  LTSITLENFKSFRKAAIPLGP-FTLLVGTNASGKSNLRDAFRFLHGVGRGY 51


>gi|26248980|ref|NP_755020.1| recombination and repair protein [Escherichia coli CFT073]
 gi|91211951|ref|YP_541937.1| recombination and repair protein [Escherichia coli UTI89]
 gi|110642776|ref|YP_670506.1| recombination and repair protein [Escherichia coli 536]
 gi|117624837|ref|YP_853750.1| recombination and repair protein [Escherichia coli APEC O1]
 gi|191171389|ref|ZP_03032938.1| DNA repair protein RecN [Escherichia coli F11]
 gi|218559535|ref|YP_002392448.1| recombination and repair protein [Escherichia coli S88]
 gi|227888182|ref|ZP_04005987.1| recombination and repair protein [Escherichia coli 83972]
 gi|237706796|ref|ZP_04537277.1| recombination and repair protein [Escherichia sp. 3_2_53FAA]
 gi|300986814|ref|ZP_07177803.1| DNA repair protein RecN [Escherichia coli MS 45-1]
 gi|301050487|ref|ZP_07197365.1| DNA repair protein RecN [Escherichia coli MS 185-1]
 gi|331658763|ref|ZP_08359705.1| DNA repair protein RecN [Escherichia coli TA206]
 gi|26109386|gb|AAN81588.1|AE016764_270 DNA repair protein recN [Escherichia coli CFT073]
 gi|91073525|gb|ABE08406.1| DNA repair protein RecN [Escherichia coli UTI89]
 gi|110344368|gb|ABG70605.1| DNA repair protein RecN [Escherichia coli 536]
 gi|115513961|gb|ABJ02036.1| DNA recombination and repair protein RecN [Escherichia coli APEC
           O1]
 gi|190908323|gb|EDV67913.1| DNA repair protein RecN [Escherichia coli F11]
 gi|218366304|emb|CAR04055.1| recombination and repair protein [Escherichia coli S88]
 gi|226899836|gb|EEH86095.1| recombination and repair protein [Escherichia sp. 3_2_53FAA]
 gi|227834822|gb|EEJ45288.1| recombination and repair protein [Escherichia coli 83972]
 gi|294493325|gb|ADE92081.1| DNA repair protein RecN [Escherichia coli IHE3034]
 gi|300297795|gb|EFJ54180.1| DNA repair protein RecN [Escherichia coli MS 185-1]
 gi|300407866|gb|EFJ91404.1| DNA repair protein RecN [Escherichia coli MS 45-1]
 gi|307554628|gb|ADN47403.1| ATPase involved in DNA repair [Escherichia coli ABU 83972]
 gi|307625835|gb|ADN70139.1| recombination and repair protein [Escherichia coli UM146]
 gi|315290943|gb|EFU50308.1| DNA repair protein RecN [Escherichia coli MS 153-1]
 gi|315298665|gb|EFU57919.1| DNA repair protein RecN [Escherichia coli MS 16-3]
 gi|323951186|gb|EGB47062.1| DNA repair protein RecN [Escherichia coli H252]
 gi|323957017|gb|EGB52743.1| DNA repair protein RecN [Escherichia coli H263]
 gi|324012454|gb|EGB81673.1| DNA repair protein RecN [Escherichia coli MS 60-1]
 gi|331053345|gb|EGI25374.1| DNA repair protein RecN [Escherichia coli TA206]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 83/240 (34%), Gaps = 32/240 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       ++  LD         +       +  M  R +L
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTK--PEHQKFLLD--------GYANETSQLQE-MTARYQL 165

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             +   D +    +  + A    ++   +++ +N  +    E+ ++ +  + +L+ +G L
Sbjct: 166 WHQSCRDLAHHQQLSQERA-ARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQL 223


>gi|332876602|ref|ZP_08444362.1| RecF/RecN/SMC protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332685435|gb|EGJ58272.1| RecF/RecN/SMC protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 410

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 60/383 (15%), Positives = 122/383 (31%), Gaps = 78/383 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDA---QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           IK ++I++ R+   + +  +     H +  G NG GKT++L AI           A++ +
Sbjct: 5   IKNIHINKVRHLKDINIPLEKEYYPHLMITGKNGSGKTSLLNAI-----------ANHIE 53

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
                +   + +F   E      +  +K     D S   L I   +     +        
Sbjct: 54  RI---ANDDYKSFESYERQIEYWEKQLK-----DNSKNTLSIEKDLEYWKSQYELFFGEV 105

Query: 124 WLVPSM-DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
            +     D +        R++ D             +  +E     +N    +       
Sbjct: 106 IVAFEDVDNLI-------RKYQDGNF---------IIAFYEAHRTIKNLQEPKNPTKPKL 149

Query: 183 CSSIEAQ----------MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
               E +          +A+L ++  +AR E +   ++ I E+          ++    L
Sbjct: 150 QDKWEIKQTSTQEFLKFLADLKIQEALARNEKLERDANQIREWF---------VNFERLL 200

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
              F      L   Y    F         + T +    SD      D  +          
Sbjct: 201 GEIFQDKDLQLYFNYKDYSFKILTKGKEFKFTEL----SDGFAAVLDIVVD--------- 247

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGT 350
               + + + H   ++       I+L+DEI  HL  + +  +  ++T I    Q  +T  
Sbjct: 248 ----LILKMQHKNQLTRAYECEGIVLVDEIETHLHLELQKVIMPLLTKIFPNIQFIVTTH 303

Query: 351 DKSVFDSLNETAKFMRISNHQAL 373
              V  SL+  A    + + + +
Sbjct: 304 SPFVLSSLS-NAVAFDLEHQEII 325


>gi|134301995|ref|YP_001121964.1| hypothetical protein FTW_1016 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049772|gb|ABO46843.1| hypothetical protein FTW_1016 [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 468

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 8/80 (10%)

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           D+ + + D  +TI   S GE+K++L+    A    ++       + +LDE  +H+  D +
Sbjct: 37  DIQIFFNDDNLTIGDLSEGEKKLLLLK---AAFEFVAQ---EDSLFMLDEPDSHIHLDNK 90

Query: 332 NALFRIVTDI--GSQIFMTG 349
             +  I+       Q  +T 
Sbjct: 91  KHIIDILEQYKDNRQFIVTT 110


>gi|157127726|ref|XP_001661151.1| structural maintenance of chromosomes 5 smc5 [Aedes aegypti]
 gi|108872830|gb|EAT37055.1| structural maintenance of chromosomes 5 smc5 [Aedes aegypti]
          Length = 1060

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/210 (19%), Positives = 72/210 (34%), Gaps = 21/210 (10%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRASY 61
           KIK + + +F  Y  +    D    I +G NG GK+ I+ AI  L  G       R  S 
Sbjct: 31  KIKSVAVKDFVTYDVVIFYPDEHLNIIIGPNGTGKSTIVAAI-VLGMGGNCKLLSRSGSI 89

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL----- 116
            D  + G        A  +   G  DI +   T +   +   +I+   +   + L     
Sbjct: 90  EDYIKNGKEMAKIEVALYKNSRG--DIMMFNRTFNRSGMDRFEIDGTKVSHKEFLKRVKD 147

Query: 117 --NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
              +   +   +P            R   L+       P     M    +L+  R +   
Sbjct: 148 LNIQIDNLCQFLPQDRVQDFTKMNSRELLLNTQASVCRPEMTELM---NQLLEKRQQ--- 201

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEM 204
           +   + S   ++ A++ E   K    RV++
Sbjct: 202 QKTVNKSSMDNL-AKLKEAEAKNEELRVQI 230


>gi|74213333|dbj|BAB26022.3| unnamed protein product [Mus musculus]
          Length = 338

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 54  IESIQLRNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLK 113

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
              + G  S              ADISI L  R D + R     D ++
Sbjct: 114 GFVKAGQNS--------------ADISITLRNRGDDAFRANVYGDSIV 147


>gi|51244608|ref|YP_064492.1| ABC transporter, ATP-binding protein [Desulfotalea psychrophila
           LSv54]
 gi|50875645|emb|CAG35485.1| probable ABC transporter, ATP-binding protein [Desulfotalea
           psychrophila LSv54]
          Length = 246

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 13/86 (15%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIF 346
           S GE+K+V +   LA             ILLLDE + +LD   ++ L  I+  +  SQ+ 
Sbjct: 141 SGGEKKLVALATILAM---------KPKILLLDEPTNNLDPRTQDRLVEILNGLAQSQLI 191

Query: 347 MTGTDKSVFDSLNETAKFMRISNHQA 372
           ++  D    DS+ E  +   +   + 
Sbjct: 192 ISH-DLDFLDSVTE--ELYTVEEGRI 214


>gi|325203636|gb|ADY99089.1| chromosome segregation protein SMC [Neisseria meningitidis
          M01-240355]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +   R+
Sbjct: 1053 GKKNSTIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCRL 1107

Query: 338  VTDIGSQI 345
            V ++ +Q 
Sbjct: 1108 VKEMSAQT 1115


>gi|325143894|gb|EGC66206.1| chromosome segregation protein SMC [Neisseria meningitidis
          M01-240013]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|317503314|ref|ZP_07961364.1| DNA repair protein RecN [Prevotella salivae DSM 15606]
 gi|315665573|gb|EFV05190.1| DNA repair protein RecN [Prevotella salivae DSM 15606]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 80/240 (33%), Gaps = 28/240 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F     L + FD+  ++  G+ G GK+ IL AI+ L    +  +  +     
Sbjct: 2   LKQLYIKNFTLIDELNISFDSGFSVITGETGAGKSIILGAINLLLGQRADTKVIKAEKDK 61

Query: 63  DVTRIGSP----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            +             + F   +      D  ++ E   +   R   IND+ +++      
Sbjct: 62  CIIEAHFNLKNYDLGAFFQENDIDYDPEDCILRREINKNGKSRAF-INDIPVQLTLIKTL 120

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP---RHRRRMIDFERLMRGRNRLLTE 175
             R+  +      +       +   +D ++   +     ++     + + +         
Sbjct: 121 GERLIDIHSQHQNLLLQKENFQLNVVD-IIAHDEKERNEYQISFKAYRKAL--------- 170

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
                S    +E  +A+     +  R +  N L    ++  ++E+       L+   + K
Sbjct: 171 -----SELKLLEDNLAQSKENEDFMRFQF-NELDKAQLKPDEQESIEQETEQLSHAEEIK 224


>gi|320107204|ref|YP_004182794.1| DNA repair protein RecN [Terriglobus saanensis SP1PR4]
 gi|319925725|gb|ADV82800.1| DNA repair protein RecN [Terriglobus saanensis SP1PR4]
          Length = 590

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 18/130 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L    +         F     +  G+ G GK+ +++A++ L  G+     + +DV R
Sbjct: 2   LLELRAENYAVIDHAVASFGPGLNLLTGETGAGKSILVDALALLLGGK-----ASSDVVR 56

Query: 67  IGSP-----------SFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND-VVIRVV 113
            G+            +         G++    +I ++ E       R    N    + V+
Sbjct: 57  HGAEKAVVSCVFDTTAGAELILEANGIDVEGTEILLRREVSSAGKGRVFVNNQPATVTVL 116

Query: 114 DELNKHLRIS 123
            +L   L + 
Sbjct: 117 KQLAPELALV 126


>gi|239831369|ref|ZP_04679698.1| chromosome segregation protein SMC [Ochrobactrum intermedium LMG
           3301]
 gi|239823636|gb|EEQ95204.1| chromosome segregation protein SMC [Ochrobactrum intermedium LMG
           3301]
          Length = 1164

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 13  MRFSKLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 72

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R S    +IN  
Sbjct: 73  MDDVIFSGSATRPARNTAEVTLFLDNSDRSAPASYNDADELQVSRRIERESGSVYRINGK 132

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 133 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 177


>gi|161869474|ref|YP_001598641.1| hypothetical protein NMCC_0486 [Neisseria meningitidis 053442]
 gi|161595027|gb|ABX72687.1| conserved hypothetical protein [Neisseria meningitidis 053442]
 gi|319409923|emb|CBY90248.1| SMC protein [Neisseria meningitidis WUE 2594]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.2 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +    +
Sbjct: 1053 GKKNSTIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCNL 1107

Query: 338  VTDIGSQI 345
            V ++ +Q 
Sbjct: 1108 VKEMSAQT 1115


>gi|119961847|ref|YP_947210.1| hypothetical protein AAur_1436 [Arthrobacter aurescens TC1]
 gi|119948706|gb|ABM07617.1| conserved hypothetical protein [Arthrobacter aurescens TC1]
          Length = 402

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          IK L I+ +R+   L +       I  G NG GK+++  A+  L+
Sbjct: 2  IKALAIANYRSIRDLAIELH-GLDIVTGANGSGKSSLYRALRLLA 45


>gi|26989245|ref|NP_744670.1| hypothetical protein PP_2525 [Pseudomonas putida KT2440]
 gi|24984090|gb|AAN68134.1|AE016445_4 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 387

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 19/189 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  +R+   L L    Q  +  G NG GK+N+ +A+  L+            + R
Sbjct: 2   LTTLAIGNYRSINHLVLPLS-QLNLVTGANGSGKSNLYKALRLLAETAQ--GGVVEALAR 58

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G     + +A  E    +    + ++ +    VR L++      +   +   L I    
Sbjct: 59  EGGLD-STWWAGPETSARMRRGEVPIQGQHPSEVRRLRLGFATEDLGFAITLGLPIPLPY 117

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           PS   +       +   +     A  P           L+  R   L      + W + +
Sbjct: 118 PSAFML---DPEIKCEAI-WGAGAYRPS---------SLLVERKNALVRAREGNRW-AVL 163

Query: 187 EAQMAELGV 195
           + Q A+ G 
Sbjct: 164 D-QHADSGE 171


>gi|84623948|ref|YP_451320.1| chromosome segregation protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84367888|dbj|BAE69046.1| chromosome segregation protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 1167

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDV 108
             DV   GS +    + A VE +   +D +I  E                      +N  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDHTISGEFASFNEISVKRLVSRDGNSAYYLNGT 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 KCRRRD 126


>gi|209522031|ref|ZP_03270689.1| SMC domain protein [Burkholderia sp. H160]
 gi|209497532|gb|EDZ97729.1| SMC domain protein [Burkholderia sp. H160]
          Length = 873

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/203 (19%), Positives = 75/203 (36%), Gaps = 17/203 (8%)

Query: 167 RGRNRLLTEGYFDSSW-CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           R    L      +     + + +Q+  +G      R+  + A     M    + +     
Sbjct: 666 RASAELARNEQHERQLRIAELRSQLETMGASGLGERLAALEAQVEQAMRRKDELSMRASA 725

Query: 226 LSL-TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA--- 281
           LSL    L  + D +   L+    ++L    K         +G    DLI    D+    
Sbjct: 726 LSLLDEVLVDERDAALAQLRAPLTERLGHYLKRIFPQSSLALG---DDLIPAMLDRDGRA 782

Query: 282 ---ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
                ++ G+  +   + +   LA+A L+   +G   +L+LD+ + H D  +R+AL R +
Sbjct: 783 ELLDALSFGTREQ---LGILTRLAYADLL-QASGRPTLLMLDDAAVHTDAVRRDALKRAL 838

Query: 339 --TDIGSQIFMTGTDKSVFDSLN 359
                  QI +      ++D L 
Sbjct: 839 IDAATRHQILVFTCHPELWDDLG 861



 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +K++ + I EFR ++   +         +F+G N  GK+ I EA+  +   R ++ +   
Sbjct: 1  MKLQRIAIQEFRQFSGQLVIDDLQPGLNLFIGPNEAGKSTIAEAVRTVFLER-YKASHLK 59

Query: 63 DVTRIG 68
          D+   G
Sbjct: 60 DLLPWG 65


>gi|182891126|gb|AAI65244.1| Zgc:152845 protein [Danio rerio]
          Length = 697

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
            I  + +  F  Y    +    +  + VG NG GK++I+ AI     G+     R     
Sbjct: 41  AIVRIAMHNFLTYDHSEVFPGPKLNMIVGANGTGKSSIVCAICLGLAGKTSVLGRGDKVG 100

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              + G     S    +    G   ++ +++  +++S   L       + V+E  + L I
Sbjct: 101 LYVKRGCQRG-SVEIELYRTRGNLIVTREIQVENNQSTWMLNKKHASQKAVEEAVRELHI 159

Query: 123 SW 124
             
Sbjct: 160 QV 161


>gi|115527798|gb|AAI24594.1| Zgc:152845 [Danio rerio]
          Length = 697

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
            I  + +  F  Y    +    +  + VG NG GK++I+ AI     G+     R     
Sbjct: 41  AIVRIAMHNFLTYDHSEVFPGPKLNMIVGANGTGKSSIVCAICLGLAGKTSVLGRGDKVG 100

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              + G     S    +    G   ++ +++  +++S   L       + V+E  + L I
Sbjct: 101 LYVKRGCQRG-SVEIELYRTRGNLIVTREIQVENNQSTWMLNKKHASQKAVEEAVRELHI 159

Query: 123 SW 124
             
Sbjct: 160 QV 161


>gi|39936581|ref|NP_948857.1| DNA repair protein RecN [Rhodopseudomonas palustris CGA009]
 gi|39650437|emb|CAE28960.1| putative DNA repair protein RecN [Rhodopseudomonas palustris
          CGA009]
          Length = 561

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M  R+ I+ + +        L + F     +  G+ G GK+ +L+A +    GRG     
Sbjct: 1  MLARLSIRDIVL-----IERLDIEFSRGLAVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61 YADVTRIGSPSF 72
           A + R G+   
Sbjct: 51 DAALVRHGAEHG 62


>gi|294053685|ref|YP_003547343.1| hypothetical protein Caka_0144 [Coraliomargarita akajimensis DSM
          45221]
 gi|293613018|gb|ADE53173.1| hypothetical protein Caka_0144 [Coraliomargarita akajimensis DSM
          45221]
          Length = 608

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 5  IK-IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +K I  + I  FR+  S+ L   +   +  G N VGK+N+++A++    G  
Sbjct: 1  MKFISKITIKYFRSLHSVDLKKCSSVNVISGRNDVGKSNVIKALNLFFNGSS 52


>gi|316933198|ref|YP_004108180.1| DNA repair protein RecN [Rhodopseudomonas palustris DX-1]
 gi|315600912|gb|ADU43447.1| DNA repair protein RecN [Rhodopseudomonas palustris DX-1]
          Length = 561

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 10/72 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M  R+ I+ + +        L + F     +  G+ G GK+ +L+A +    GRG     
Sbjct: 1  MLARLSIRDIVL-----IERLDIEFSRGLAVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61 YADVTRIGSPSF 72
           A + R G+   
Sbjct: 51 DAALVRHGAEHG 62


>gi|270296415|ref|ZP_06202615.1| DNA repair protein RecN [Bacteroides sp. D20]
 gi|270273819|gb|EFA19681.1| DNA repair protein RecN [Bacteroides sp. D20]
          Length = 556

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 66/203 (32%), Gaps = 24/203 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F +  ++  G+ G GK+ IL AI  L    +  +  R  +  
Sbjct: 2   LRSLYIQNYALIEKLDISFSSGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRVGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            +   R   S      F     +E   +  ++ E       R   IND       + EL 
Sbjct: 62  CIIEARFDISAYGMQPFFEENELEYEEECLLRREVSASGKSRAF-INDTPASLAQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL---MRGRN---- 170
           + L           +       +   LD ++   +      +  ++ +    +       
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLD-ILSHNE----EALSAYQHIFGAWKQAQQDLE 173

Query: 171 RLLTEGYFDSSWCSSIEAQMAEL 193
            L+     D S    I  Q+ +L
Sbjct: 174 ALVARANQDKSDEDYIRFQLEQL 196


>gi|271962677|ref|YP_003336873.1| SMC domain-containing protein [Streptosporangium roseum DSM 43021]
 gi|270505852|gb|ACZ84130.1| SMC domain protein [Streptosporangium roseum DSM 43021]
          Length = 450

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 61/414 (14%), Positives = 123/414 (29%), Gaps = 95/414 (22%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  L ++EF+ +    L      T  +G N  GK+N L+ +  LS              
Sbjct: 4   RLLELRLTEFKTFRDATLPLG-GMTTLIGRNSSGKSNALDGLEVLSRLAS---------- 52

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             G+    +  +R  G EG     I  E          ++    +     +     + WL
Sbjct: 53  --GADLVDALDSR-RGDEGPLRGGI--EGCPPHGADQFRL-GCTVMSPSRVGSGYILIWL 106

Query: 126 V--------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
                    P +         E+RR        I             L++  +     G 
Sbjct: 107 DVTIQVRPEPEIISETLRGLSEKRRSTRNPAGQIAHE----------LLKTVDAAPGSGS 156

Query: 178 FDSSWC---------------SSIEAQM-------AELGVKINIARVEMINALSSLIMEY 215
            D++W                  + +Q+        E   ++  A  +++ AL S+    
Sbjct: 157 IDATWYNGRRGRDPRAPFRSTRLLTSQLPLRLAGETEAEHRVTTAAEDVLEALRSVFH-- 214

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI--------- 266
              +  PH+        D +  ++     E  +  +   R+ D    R L+         
Sbjct: 215 --LDPVPHLMRQYVPSRDTRLRRT----AENLSAVVGHMRENDPQRFRQLVAGVQGLVEH 268

Query: 267 ---------GPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVG-IFLAHARLI------SN 309
                     P    ++    D A+      S G  +   +    L   + +      + 
Sbjct: 269 EVTGIEVIRSPLNDVMLALREDGAVTPAREMSDGLLRFAAIATSLLRQGQDLDLGGRGAE 328

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLN 359
             G  P L+++E+   L   +   +  +V        SQ+  T    ++  +L 
Sbjct: 329 DDGRPPTLVIEELENGLHPSQATEILGLVKQATQENASQVIFTTHSPALLSALE 382


>gi|190341691|gb|ACE74922.1| RecN [Cronobacter turicensis]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/276 (17%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     D    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GDLMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQAGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|188576351|ref|YP_001913280.1| chromosome segregation protein SMC [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188520803|gb|ACD58748.1| chromosome segregation protein SMC [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 1167

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDV 108
             DV   GS +    + A VE +   +D +I  E                      +N  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDHTISGEFASFNEISVKRLVSRDGNSAYYLNGT 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 KCRRRD 126


>gi|59713578|ref|YP_206353.1| hypothetical protein VF_A0395 [Vibrio fischeri ES114]
 gi|59481826|gb|AAW87465.1| conserved protein with nucleoside triphosphate hydrolase domain
           [Vibrio fischeri ES114]
          Length = 544

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 13/115 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +S FR    L L F+ Q T  +G+N  GK+++L+A+S   P  G       ++
Sbjct: 1   MLLERIEVSGFRGIKRLSLSFE-QLTTLIGENTWGKSSLLDALSIALPISG-------EL 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +     F    +     +    I I  +T +    +  +      R +  L +H
Sbjct: 53  HQFTLKDFHQDHSISYTQDQHIQIIITWQTTEKNEHKAGRY-----RKLSSLWQH 102


>gi|126172987|ref|YP_001049136.1| hypothetical protein Sbal_0740 [Shewanella baltica OS155]
 gi|125996192|gb|ABN60267.1| conserved hypothetical protein [Shewanella baltica OS155]
          Length = 390

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I  +R+   + L    Q  +  G NG GK+N+ +A+  L+
Sbjct: 2  LTTLAIFNYRSLREIVLPLG-QLNLITGANGSGKSNLYKALRLLA 45


>gi|302129641|ref|NP_001180470.1| structural maintenance of chromosomes protein 5 [Danio rerio]
          Length = 1073

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 4/122 (3%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
            I  + +  F  Y    +    +  + VG NG GK++I+ AI     G+     R     
Sbjct: 41  AIVRITMHNFLTYDHSEVFPGPKLNMIVGANGTGKSSIVCAICLGLAGKTSVLGRGDKVG 100

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              + G     S    +    G   ++ +++  +++S   L       + V+E  + L I
Sbjct: 101 LYVKRGCQRG-SVEIELYRTRGNLIVTREIQVENNQSTWMLNKKHASQKAVEEAVRELHI 159

Query: 123 SW 124
             
Sbjct: 160 QV 161


>gi|86356646|ref|YP_468538.1| chromosome partition protein [Rhizobium etli CFN 42]
 gi|86280748|gb|ABC89811.1| chromosome partition protein [Rhizobium etli CFN 42]
          Length = 1153

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFNKLRLVGFKSFVEPTEFIIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  E  A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVALYLDNGERTAPAAFNDSDEIQVTRRIEREQGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR+ L+
Sbjct: 121 ESRAKDVQLLFADASTGARSPSMVGQGRIGELIQAKPQARRQLLE 165


>gi|322786052|gb|EFZ12663.1| hypothetical protein SINV_01372 [Solenopsis invicta]
          Length = 1196

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 12 ISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADVTRIG 68
          I  F++Y    +   FD +H + VG NG GK+N   AI   LS      R          
Sbjct: 3  IQGFKSYREQTVVEPFDPRHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQRQALLHE 62

Query: 69 SPSFFSTFARVEGMEGLADISIKLET 94
                  A VE +   +D  + ++ 
Sbjct: 63 GTGPRVISAHVEIIFDNSDGRLPIDK 88



 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 10/94 (10%)

Query: 277  YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
            +  +   +   S G++ +V + +  A           AP  L DEI   LD   R A+  
Sbjct: 1085 HRGEMREMNQLSGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVAD 1139

Query: 337  IVTDIGS--QIFMTGTDKSVFDSLNETAKFMRIS 368
            ++ ++ S  Q F+T T     + L+   KF  + 
Sbjct: 1140 MIHELSSDAQ-FITTT--FRPELLHHANKFYGVK 1170


>gi|313668974|ref|YP_004049258.1| hypothetical protein NLA_16940 [Neisseria lactamica ST-640]
 gi|313006436|emb|CBN87899.1| conserved hypothetical protein [Neisseria lactamica 020-06]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +    +
Sbjct: 1053 GKKNSTIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCNL 1107

Query: 338  VTDIGSQI 345
            V ++ +Q 
Sbjct: 1108 VKEMSAQT 1115


>gi|306835832|ref|ZP_07468829.1| ATPase [Corynebacterium accolens ATCC 49726]
 gi|304568306|gb|EFM43874.1| ATPase [Corynebacterium accolens ATCC 49726]
          Length = 862

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASY 61
          ++I  L I   R    L L    +    +  G+N  GK+ I+EA+  +   +   R +  
Sbjct: 1  MRIHSLEIKNVRGIEHLVLDDLPETGVVVIHGENEAGKSTIVEALDVVLTEKHTARPSGI 60

Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADI 88
           D+  +G        A +   E    I
Sbjct: 61 RDLQPVGKDVSPEVIADISVGEYRFRI 87


>gi|298481742|ref|ZP_06999932.1| DNA repair protein RecN [Bacteroides sp. D22]
 gi|298271964|gb|EFI13535.1| DNA repair protein RecN [Bacteroides sp. D22]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/201 (18%), Positives = 67/201 (33%), Gaps = 17/201 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  RR +  
Sbjct: 2   LRSLYIQNYALIEKLDISFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRRGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            +   R   +      F     +E   +  ++ E +     R   IND       + EL 
Sbjct: 62  CIIEARFDIAAYGMRPFFEENELEYDEECILRREVQASGKSRAF-INDTPASLAQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMV---FAIDPRHRRR--MIDFERLMRGRNRL 172
           + L           +       +   LD +     A++  H R       ER +     L
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLDILAHNDAALEKYHLRYGEWKQTERELAELMSL 178

Query: 173 LTEGYFDSSWCSSIEAQMAEL 193
             +   D  +      Q+ E 
Sbjct: 179 AEKSRSDEDYIRFQLEQLEEA 199


>gi|291530281|emb|CBK95866.1| chromosome segregation protein SMC, common bacterial type
           [Eubacterium siraeum 70/3]
          Length = 1192

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 13/118 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +  K + I  F+++     L FD + T  VG NG GK+NI +A+ ++      +  R   
Sbjct: 1   MFFKSMEIYGFKSFPDKTILHFDKRMTAVVGSNGNGKSNISDALRWVMGEQGAKSLRGDK 60

Query: 61  YADVTRIGS-----PSFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVV 109
             DV   G+       F S    ++  +    +    + +  +  RS     +IN   
Sbjct: 61  MEDVIFHGTVRRKPMGFASVTLTIDNCDRALRVDSDEVVISRKLYRSGESEYKINGAK 118


>gi|160938269|ref|ZP_02085624.1| hypothetical protein CLOBOL_03165 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438642|gb|EDP16399.1| hypothetical protein CLOBOL_03165 [Clostridium bolteae ATCC
           BAA-613]
          Length = 552

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 89/313 (28%), Gaps = 53/313 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L +          + F     I  G+ G GK+ I+ +++    G+  + + 
Sbjct: 1   MLLELHVKNLAL-----IEKADVEFGEGLNILTGETGAGKSIIIGSVTMALGGKAPKGS- 54

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLA-----------DISIKLETRDDRSVRCLQINDV 108
                R G+  ++      V G E              D  + +  +   +    +IND 
Sbjct: 55  ----IRPGADYAYIELVFSVTGEEKRKALRELDVEPTEDGLVIISRKLTSARSISRINDE 110

Query: 109 VI--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
            +    + ++   L           +                     +H   +  + +  
Sbjct: 111 TVTMARLSQITGLLLDIHGQHEHQSLLYKS-----------------KHLEILDAYVKAA 153

Query: 167 RG--RNRLLTEGYFDSSWCSSIEAQMAELGVKINIA---RVEMINALSSLIMEYVQKENF 221
               +  +        S    +     +   +I  A   R E I  + +  ++  ++E  
Sbjct: 154 TQPVKQTIADRYRIYRSLEEKLRGFDLDAESRIREADFLRFE-IEEIEASALKEGEEEEL 212

Query: 222 PHIKLSLTGF------LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
             +    +        L   ++           K++    + D          + +D I+
Sbjct: 213 TSVYRRYSHSRRIAECLGAAYEAVEGDWLARALKEVEQASEYDESLGGVRDQLYDADSIL 272

Query: 276 DYCDKAITIAHGS 288
               + ++    S
Sbjct: 273 RDAGREMSAYLDS 285


>gi|221068905|ref|ZP_03545010.1| DNA repair protein RecN [Comamonas testosteroni KF-1]
 gi|220713928|gb|EED69296.1| DNA repair protein RecN [Comamonas testosteroni KF-1]
          Length = 585

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 86/285 (30%), Gaps = 42/285 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + + +F    SL L +    T+  G+ G GK+ +L+A+  +   R     + A V
Sbjct: 1   MALKRIVLRDFVIVQSLDLDWQTGFTVLTGETGAGKSIMLDALQLVLGAR-----ADAQV 55

Query: 65  TRIGSPSFFS---------TFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI---- 110
            R G P                 ++      +  + L    D   R    IN        
Sbjct: 56  VREGCPQADICAEFDCPPHLHEWLQESGFAQEQDLLLRRVIDSLGRSRAWINGSPATATQ 115

Query: 111 ------RVVDELNKHLRISWLVPSMDRIF------SGLSMERRRFLDRMVFAIDPRHRRR 158
                 +++D   +H   S   P   R           +  +  + D           + 
Sbjct: 116 LRHLGDQLIDVHGQHAWQSLTRPDAARAMLDTYGGIETAQLKSLWQDW--RQSHQALEQA 173

Query: 159 MIDFERLMRGRNRL------LTEGYFDSSWCSSIEAQMAELGVK--INIARVEMINALSS 210
           +   + L R R RL      L +    +     + AQ   L     +  +    +  L  
Sbjct: 174 LSAQDNLQRERERLQWQISELDKLSPRAEEWDELNAQHTRLSHAQTLMDSAQSCLQLLED 233

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
                       H  L     L+ +F QS   +      +L D R
Sbjct: 234 DDAGAATPLGRAHHLLQDQEHLEPEF-QSIADVLGSCVAQLHDAR 277


>gi|15676451|ref|NP_273590.1| hypothetical protein NMB0545 [Neisseria meningitidis MC58]
 gi|7225771|gb|AAF40974.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|325139802|gb|EGC62335.1| chromosome segregation protein SMC [Neisseria meningitidis CU385]
          Length = 1161

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +   R+
Sbjct: 1053 GKKNSTIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCRL 1107

Query: 338  VTDIGSQI 345
            V ++ +Q 
Sbjct: 1108 VKEMSAQT 1115


>gi|107028934|ref|YP_626029.1| ATPase-like [Burkholderia cenocepacia AU 1054]
 gi|116689908|ref|YP_835531.1| ATPase-like protein [Burkholderia cenocepacia HI2424]
 gi|105898098|gb|ABF81056.1| ATPase-like protein [Burkholderia cenocepacia AU 1054]
 gi|116647997|gb|ABK08638.1| ATPase-like protein [Burkholderia cenocepacia HI2424]
          Length = 391

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +K L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 3  ALKTLAIANYRSLRELIVPLAA-LNVVTGPNGSGKSSVYRALRLLA 47


>gi|326326014|ref|YP_004250823.1| hypothetical protein VIBNI_0067 [Vibrio nigripulchritudo]
 gi|323669065|emb|CBJ93107.1| Conserved hypothetical protein [Vibrio nigripulchritudo]
          Length = 569

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + I+ + I  +R + +  +      ++ +G+N  GKTN+  A++ 
Sbjct: 1  MYIRTVEIENYRAFKNFEIKLSP-LSLIIGENEAGKTNLFSALTL 44


>gi|310830443|ref|YP_003965544.1| Metallophosphoesterase [Paenibacillus polymyxa SC2]
 gi|309249910|gb|ADO59476.1| Metallophosphoesterase [Paenibacillus polymyxa SC2]
          Length = 841

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSF 72
             F+++    L F     + VG++  GKT IL    ++   +     S   V + G+   
Sbjct: 356 ENFQSHEYTDLEFSRGLNVLVGESRQGKTAILRGFQWMYENK----PSGRRVIKRGADYA 411

Query: 73  FSTFARVEG------MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
             TF    G      ME   +     E  D  +   +  N  ++  V ++  +     
Sbjct: 412 KVTFFLSNGFVVSRIMEKKKNGKNGYEITDPSTGEVVYYNTKILPEVQKILGYNPFVI 469


>gi|300865470|ref|ZP_07110263.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300336539|emb|CBN55413.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 426

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 52/388 (13%), Positives = 123/388 (31%), Gaps = 77/388 (19%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           + L I  F     L +    +  I +G    GK+   + + +    + F           
Sbjct: 3   EKLIIRNFAGIKDLEIEV-KRINILIGPQASGKSVCAKLLFYF---KNF----------- 47

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVP 127
                +   + VE      ++ +    + +                D   ++   +  + 
Sbjct: 48  ----VWEVLSVVENELTKRNLDLNYSKKFEEYFPQDCWG-----KQDFFIRYEISNVFI- 97

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
               I    +  R   +      +  +    + +  + +R  +      Y +        
Sbjct: 98  ---EIRRQDTKGR---ISLSYSELLKKELTDLRNLMKKLREASSEKNTQYVN-------- 143

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQ---------KENFPHIKLSLTGFLD----- 233
             + +L +   I R  ++ +LS  I              +  F +++ ++  FL      
Sbjct: 144 --LDKLSLSRLILRDNLVESLSRSICREAAFNQLFIPAGRSFFANLQSNIFSFLSNNNTL 201

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR---------------SDLIVDYC 278
             F +SF ++ E         R  D  ++      +R                D +    
Sbjct: 202 DPFLRSFGSIYETIKNLGIQYRINDKYTKDIQEEINRLIEKSLCGKHIHEKGKDFLEAAD 261

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            + I++A+ S+G+Q+ + + I LA    ++++ G   +  ++E  AHL    +  +  ++
Sbjct: 262 GRRISVANSSSGQQETLPLTIILAALPFLASSGGGQTVY-IEEPEAHLFPSAQRNIIELI 320

Query: 339 T------DIGSQIFMTGTDKSVFDSLNE 360
                      Q F+T     V  +LN 
Sbjct: 321 ATVFNSRKERLQFFITTHSPYVLTALNN 348


>gi|291557096|emb|CBL34213.1| chromosome segregation protein SMC, common bacterial type
           [Eubacterium siraeum V10Sc8a]
          Length = 1192

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 13/118 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +  K + I  F+++     L FD + T  VG NG GK+NI +A+ ++      +  R   
Sbjct: 1   MFFKSMEIYGFKSFPDKTILHFDKRMTAVVGSNGNGKSNISDALRWVMGEQGAKSLRGDK 60

Query: 61  YADVTRIGS-----PSFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVV 109
             DV   G+       F S    ++  +    +    + +  +  RS     +IN   
Sbjct: 61  MEDVIFHGTVRRKPMGFASVTLTIDNCDRALRVDSDEVVISRKLYRSGESEYKINGAK 118


>gi|291536575|emb|CBL09687.1| Predicted ATP-dependent endonuclease of the OLD family [Roseburia
          intestinalis M50/1]
          Length = 627

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  ++I  F+    +++       I VG N  GKT ILEAI   + G     A   D
Sbjct: 1  MKLTGIHIKNFKAIHEMKIDSIENALILVGQNNTGKTTILEAIR-AAFGDYHISAEDFD 58


>gi|251790874|ref|YP_003005595.1| recombination and repair protein [Dickeya zeae Ech1591]
 gi|247539495|gb|ACT08116.1| DNA repair protein RecN [Dickeya zeae Ech1591]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 62/208 (29%), Gaps = 28/208 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F A  ++  G+ G GK+  ++A+      R       A + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQAGMSVITGETGAGKSIAIDALGLCLGNRS-----DASMVR 56

Query: 67  IGSPSFFS-------------TFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  PGAGRADICARFSLADTPAALRWLEHNQLDDNNECLLRRVISADGRSRAF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDFE---RLM 166
            + EL +HL       +   +       +R  LD       +    R+    +    R +
Sbjct: 116 QLRELGQHLIQLHGQHAHQLLLK--PEHQRHLLDAYADESQLLCAMRQVWQQWHQSCREL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELG 194
               +   E             ++ E  
Sbjct: 174 AQHQQATIEREARRELLQYQLKELNEFA 201


>gi|197337427|ref|YP_002157989.1| putative RecF family protein [Vibrio fischeri MJ11]
 gi|197314679|gb|ACH64128.1| putative RecF family protein [Vibrio fischeri MJ11]
          Length = 544

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 13/115 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +S FR    L L F+ Q T  +G+N  GK+++L+A+S   P  G       ++
Sbjct: 1   MLLERIEVSGFRGIKRLSLSFE-QLTTLIGENTWGKSSLLDALSIALPISG-------EL 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +     F    +     +    I I  +T +    +  +      R +  L +H
Sbjct: 53  HQFTLKDFHQDHSISYTQDQHIQIIITWQTTEKNEHKAGRY-----RKLSSLWQH 102


>gi|167751474|ref|ZP_02423601.1| hypothetical protein EUBSIR_02470 [Eubacterium siraeum DSM 15702]
 gi|167655282|gb|EDR99411.1| hypothetical protein EUBSIR_02470 [Eubacterium siraeum DSM 15702]
          Length = 1192

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 13/118 (11%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           +  K + I  F+++     L FD + T  VG NG GK+NI +A+ ++      +  R   
Sbjct: 1   MFFKSMEIYGFKSFPDKTILHFDKRMTAVVGSNGNGKSNISDALRWVMGEQGAKSLRGDK 60

Query: 61  YADVTRIGS-----PSFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVV 109
             DV   G+       F S    ++  +    +    + +  +  RS     +IN   
Sbjct: 61  MEDVIFHGTVRRKPMGFASVTLTIDNCDRALRVDSDEVVISRKLYRSGESEYKINGAK 118


>gi|149174069|ref|ZP_01852697.1| hypothetical protein PM8797T_12808 [Planctomyces maris DSM 8797]
 gi|148847049|gb|EDL61384.1| hypothetical protein PM8797T_12808 [Planctomyces maris DSM 8797]
          Length = 1409

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNIL 44
          +KI  +++++F N+  L L   D    +F G N  GK+ ++
Sbjct: 1  MKITRIHVNQFGNWQDLNLAALDPGINVFYGPNETGKSTLM 41



 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 101/346 (29%), Gaps = 66/346 (19%)

Query: 66   RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            +  + + F   A  E          +   R  +  + L+     +++  E   HLR    
Sbjct: 716  QQNTENPFEQVATWERELETISSQREERARLMKQEQRLRQEADALKLKREEFSHLR---- 771

Query: 126  VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
                  +  G +  R  FL R     +       I  E+ +    R L          + 
Sbjct: 772  ---STLLIQGGAASREDFLKRAASMTER------IQIEKTLATAQRELERASQSEQEMAI 822

Query: 186  IEAQM--------AEL-------------------------------------GVKINIA 200
            +E  +        AE                                       V++   
Sbjct: 823  VEEDLLNFDAEANAEHLEMLNLELEDIEQDLVTTAENMGRLKQDYQNAKTDRSAVQLRFQ 882

Query: 201  RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
            R +++  +     E+   E        L    +        A+  +Y ++L +GR  +  
Sbjct: 883  REQILEQIRQASEEWFTTELSAVGLQKLQAEFERTSQPETLAIASDYLRQLTNGRYCNIW 942

Query: 261  SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
            +      P   D         +T++  S+G ++ + + I LA      N  G    ++LD
Sbjct: 943  TPLGEQYPKVDD----NEGHTLTVSELSSGTREQLFLAIRLAMVERFRN-NGVELPMVLD 997

Query: 321  EISAHLDEDKRNALFRIV---TDIGSQIFMTGTDKSVFDSLNETAK 363
            ++  + D+ +  A    +    + G QI        +     E  K
Sbjct: 998  DVLVNFDQSRTQAAIETLISVAEKGQQILFFTCHLHLTHLFEEQGK 1043


>gi|83594578|ref|YP_428330.1| condensin subunit Smc [Rhodospirillum rubrum ATCC 11170]
 gi|83577492|gb|ABC24043.1| condensin subunit Smc [Rhodospirillum rubrum ATCC 11170]
          Length = 1167

 Score = 46.8 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +    L +  F+++     L+ +   T  VG NG GK+N++EA+ ++   +  +  R   
Sbjct: 2   LHFTRLRLVGFKSFVEPAELMIEPGLTGVVGPNGCGKSNVVEALRWVMGETSAKQLRGED 61

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLAD------ISIKLETRDDRS-VRCLQINDV 108
             DV   G+ S            ++  EG A         +++  R  R      ++N  
Sbjct: 62  MDDVIFGGTASRPPRNVAEVTLLLDNREGGAPALFNAAQELEVTRRIARGDGSLYRVNGK 121

Query: 109 VIRVVD 114
            +R  D
Sbjct: 122 DVRARD 127


>gi|312880702|ref|ZP_07740502.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
 gi|310783993|gb|EFQ24391.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
          Length = 421

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ L I  F++     L      T  +G NG GK+ +L+A+ FL     FR      +
Sbjct: 2  LRIRRLQIHNFKSLVHFDL-PMEHLTGLIGLNGAGKSTLLQALDFLCQL--FRGDLEGYL 58

Query: 65 TRIG 68
          +R G
Sbjct: 59 SRRG 62


>gi|297625141|ref|YP_003706575.1| DNA repair protein RecN [Truepera radiovictrix DSM 17093]
 gi|297166321|gb|ADI16032.1| DNA repair protein RecN [Truepera radiovictrix DSM 17093]
          Length = 552

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
          L + +F    +LRL F     +  G+ G GK+ +++A++ L  GR     + A   R G+
Sbjct: 5  LELRDFAIIDALRLEFAPGLNVLTGETGAGKSILVDALALLIGGR-----ADAKAVRTGA 59

Query: 70 PSFFS 74
           S   
Sbjct: 60 QSALV 64


>gi|261867833|ref|YP_003255755.1| ATP-dependent OLD family endonuclease [Aggregatibacter
          actinomycetemcomitans D11S-1]
 gi|261413165|gb|ACX82536.1| ATP-dependent OLD family endonuclease [Aggregatibacter
          actinomycetemcomitans D11S-1]
          Length = 584

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KIK + I  +R+   LR+       I +G N  GK+N+L AI F 
Sbjct: 1  MKIKTIEIKNWRSIKELRIS-AQDLMIIIGQNNHGKSNLLSAILFF 45


>gi|237785885|ref|YP_002906590.1| hypothetical protein ckrop_1302 [Corynebacterium kroppenstedtii
          DSM 44385]
 gi|237758797|gb|ACR18047.1| hypothetical protein ckrop_1302 [Corynebacterium kroppenstedtii
          DSM 44385]
          Length = 908

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAI 47
          ++I  ++IS FR    + L F DA  T+  G N VGK+++++A+
Sbjct: 3  MQIHKIDISNFRTIDHVTLEFPDAGVTVISGPNEVGKSSVVKAL 46


>gi|209809244|ref|YP_002264782.1| hypothetical protein VSAL_II0449 [Aliivibrio salmonicida LFI1238]
 gi|208010806|emb|CAQ81203.1| conserved hypothetical protein [Aliivibrio salmonicida LFI1238]
          Length = 554

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +S FR    L L F+ Q T  +G+N  GK+++L+A+S   P  G       ++
Sbjct: 11  MLLERIEVSGFRGIKRLSLSFE-QLTTLIGENTWGKSSLLDALSIALPISG-------EL 62

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
            +     F    +     +    I I  +T +    R  +   
Sbjct: 63  HQFSLTDFHQDHSISYTQDQHIQIIITFQTTEKNEYRAGRYRK 105


>gi|86741844|ref|YP_482244.1| DNA repair protein RecN [Frankia sp. CcI3]
 gi|86568706|gb|ABD12515.1| DNA replication and repair protein RecN [Frankia sp. CcI3]
          Length = 584

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 60/191 (31%), Gaps = 35/191 (18%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I+I+ L + +        L      T+  G+ G GKT I++ +  L+ GR     +
Sbjct: 1   MLEEIRIRGLGVID-----DAALDLAPGLTVVSGETGAGKTMIVQGLGLLTGGR-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISI-------------------KLETRDDRSVR 101
              + R G    F     V G E      +                   +  T + RS  
Sbjct: 51  DYGLVRPGVDRAFVEGRLVIGAESAVAARVREVGGDLDEDPGGAVLVVGRTLTAEGRSRA 110

Query: 102 CLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR----RFLDRMVFAIDPRHRR 157
            +    V   V+ E+ + L          R+       +R    RF    V     R+  
Sbjct: 111 QVAGRSVPASVLAEIAEELIAVHGQSEAQRLLK--PSTQRDALDRFAGSAVAGPLARYGG 168

Query: 158 RMIDFERLMRG 168
              +  R+ R 
Sbjct: 169 VYRELTRVSRQ 179


>gi|259156490|gb|ACV96434.1| ATP-dependent endonuclease of the OLD family [Vibrio cholerae
          Mex1]
          Length = 641

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61
          +K+  + +S F+++      L  +   T  +G NG GKT  L+A+    +     RR   
Sbjct: 1  MKLHSIRVSNFQSFGAEPTELTLE-NITYLIGPNGSGKTAALQALCRLFAFDPSLRRIQR 59

Query: 62 AD 63
          +D
Sbjct: 60 SD 61


>gi|26990389|ref|NP_745814.1| hypothetical protein PP_3680 [Pseudomonas putida KT2440]
 gi|24985352|gb|AAN69278.1|AE016563_1 hypothetical protein PP_3680 [Pseudomonas putida KT2440]
          Length = 667

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 2  TNRIKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRR 58
          ++ +K+  L IS F+++      + FD   T  +G NG GKT  L+A++       G RR
Sbjct: 22 SHHMKLCSLRISGFQSFGQDITDITFD-GVTYLLGPNGAGKTATLQALARMFGFEPGLRR 80

Query: 59 ASYAD 63
             +D
Sbjct: 81 LRRSD 85


>gi|329955853|ref|ZP_08296656.1| DNA repair protein RecN [Bacteroides clarus YIT 12056]
 gi|328525233|gb|EGF52283.1| DNA repair protein RecN [Bacteroides clarus YIT 12056]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 66/217 (30%), Gaps = 25/217 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F +  ++  G+ G GK+ IL AI  L    +  +  RR +  
Sbjct: 2   LRSLYIQNYALIEKLDIDFGSGFSVITGETGAGKSIILGAIGLLLGQRADVKSIRRGAAK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            V   R   +      F     +E   +  ++ E       R   IND       + EL 
Sbjct: 62  CVIEARFEIAGYGMQPFFEENELEYEDECILRREVYASGKSRAF-INDTPASLVQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT--- 174
           + L           +       +   LD  + A D           R  +   R L    
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLD--ILAHDEEELAAYQSLHREWKQAQRDLENLI 176

Query: 175 ----EGYFDSSW----CSSIEAQMAELGVKINIARVE 203
               +   D  +       +E      G +  + R  
Sbjct: 177 ALAGQNKADEDYIRFQLEQLEDAHLTAGEQEELEREA 213


>gi|302871864|ref|YP_003840500.1| DNA repair protein RecN [Caldicellulosiruptor obsidiansis OB47]
 gi|302574723|gb|ADL42514.1| DNA repair protein RecN [Caldicellulosiruptor obsidiansis OB47]
          Length = 551

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 74/208 (35%), Gaps = 31/208 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I        L + FD   TI  G+ G GK+ I++++S L   + F+     DV R
Sbjct: 2   LKRLLIENIAIIDRLDIEFDKGLTILTGETGAGKSIIIDSLSLLLGTK-FK----KDVIR 56

Query: 67  IGS-PSFFSTFARVEG---MEGLADISIKLETR--------DDRSVRCLQIN-------- 106
            G   +  S    +E    ++ L  + I LE                  ++N        
Sbjct: 57  TGCSKACVSAIFEIEKKSTLDALIQMGISLEDNFLIVSREVYSSGKNICRVNNQFVLLST 116

Query: 107 -DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
              + + + E++       L     ++         RF  + +  +   ++    D++  
Sbjct: 117 LREITKHIFEIHGQNETHLLNDKRIQLLYID-----RFCGKELEELKAEYKDLYHDYQEK 171

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
            R   +++T+          +  Q+ E+
Sbjct: 172 KRLYEQIITKEEERERQLDLLNYQINEI 199


>gi|222034317|emb|CAP77058.1| DNA repair protein recN [Escherichia coli LF82]
 gi|312947187|gb|ADR28014.1| recombination and repair protein [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 83/240 (34%), Gaps = 32/240 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       ++  LD         +       +  M  R +L
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTK--PEHQKFLLD--------GYANETSQLQE-MTARYQL 165

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             +   D +    +  + A    ++   +++ +N  +    E+ ++ +  + +L+ +G L
Sbjct: 166 WHQSCRDLAHHQQLSQERA-ARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQL 223


>gi|167836312|ref|ZP_02463195.1| hypothetical protein Bpse38_07461 [Burkholderia thailandensis
          MSMB43]
          Length = 392

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 4  LTALAIANYRSLRDLIVPL-ATLNVITGPNGSGKSSLYRALRLLA 47


>gi|254361822|ref|ZP_04977957.1| possible OLD family overcome lysogenization defect ATP-dependent
          nuclease [Mannheimia haemolytica PHL213]
 gi|153093357|gb|EDN74353.1| possible OLD family overcome lysogenization defect ATP-dependent
          nuclease [Mannheimia haemolytica PHL213]
          Length = 515

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +K + IS FR    L L       + +G+N  GK+++++A+S +
Sbjct: 1  MYLKHIEISGFRGINHLSLQLRPNM-VLIGENAWGKSSLIDALSLI 45


>gi|329946510|ref|ZP_08294026.1| DNA repair protein RecN [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527141|gb|EGF54146.1| DNA repair protein RecN [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 620

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 47/307 (15%), Positives = 86/307 (28%), Gaps = 48/307 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L+I +        L      T   G+ G GKT +L ++  L   R         + R
Sbjct: 2   IESLHIEDLGVIEEADLPLSRGLTALTGETGAGKTMVLTSLGLLLGQRAETT-----IVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRD----------------DRSVRCLQINDVVI 110
            G+       A +   +  A     +E                    RS   L    V  
Sbjct: 57  TGAERSLVEGAFLVDPDSRAAAR-AIEAGGDLDDDLLLASRTVPFSGRSRAYLGGRSVPA 115

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR- 169
            V+ E+    R+  +    D++    +  +R  LD +     P H      + +  + R 
Sbjct: 116 SVLSEVGG--RLVSVHGQADQLRLRSAAAQRAALDSLGG---PDHAALCRRYSQAYQERR 170

Query: 170 -------------NRLLTEGYFDSSWCSSIEAQMAELGVKIN----IARVEMINALSSLI 212
                            TE     +W  ++E      G   +      R++    L    
Sbjct: 171 KVAQELQEWQASAQARATEVAQLRTWLEALEEIDPRNGEDRDLTAEAERLDHAEDLRRAA 230

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
                  +      S TG           A +    +   D    +  +R   +G   +D
Sbjct: 231 TVARTALSGEE---SATGQEPDVVSLIAHAHRSLITESDRDPVLAELAARTQRLGIDAAD 287

Query: 273 LIVDYCD 279
           +  +   
Sbjct: 288 IAAELGG 294


>gi|238029044|ref|YP_002913269.1| hypothetical protein bglu_4p0730 [Burkholderia glumae BGR1]
 gi|237880621|gb|ACR32949.1| Hypothetical protein bglu_4p0730 [Burkholderia glumae BGR1]
          Length = 767

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          ++++ + +FR    ++L  D Q TI VG N  GKT IL A+  FL+    F
Sbjct: 14 LRYVELCKFRRLGKVQLDLDPQTTILVGANNSGKTAILTALRHFLAESSPF 64


>gi|225570019|ref|ZP_03779044.1| hypothetical protein CLOHYLEM_06114 [Clostridium hylemonae DSM
          15053]
 gi|225161489|gb|EEG74108.1| hypothetical protein CLOHYLEM_06114 [Clostridium hylemonae DSM
          15053]
          Length = 616

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++I  L I  F++   + +       I VG N  GKT +L+AI
Sbjct: 1  MQITDLRIRNFKSIRDMHIQGIENALILVGKNNTGKTAVLDAI 43


>gi|167746741|ref|ZP_02418868.1| hypothetical protein ANACAC_01453 [Anaerostipes caccae DSM 14662]
 gi|317471553|ref|ZP_07930900.1| ATP-dependent OLD family endonuclease [Anaerostipes sp.
          3_2_56FAA]
 gi|167653701|gb|EDR97830.1| hypothetical protein ANACAC_01453 [Anaerostipes caccae DSM 14662]
 gi|316900956|gb|EFV22923.1| ATP-dependent OLD family endonuclease [Anaerostipes sp.
          3_2_56FAA]
          Length = 618

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++I  L I  F++  ++ L       I VG N  GK+++L+A+
Sbjct: 1  MQITSLYIHNFKSIKTMHLTDVENALILVGKNNAGKSSVLDAV 43


>gi|167077115|ref|YP_001661477.1| hypothetical protein pAV2_04 [Acinetobacter venetianus]
 gi|83833717|gb|ABC47673.1| hypothetical protein [Acinetobacter venetianus]
          Length = 389

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNIS-EFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +KI+ L++    RN     + F+   ++ VG +GVGKT IL+AI 
Sbjct: 1  MKIQSLSVKYSTRNICIQDVEFNNGLSLLVGVSGVGKTQILDAIC 45


>gi|160876805|ref|YP_001556121.1| hypothetical protein Sbal195_3701 [Shewanella baltica OS195]
 gi|160862327|gb|ABX50861.1| conserved hypothetical protein [Shewanella baltica OS195]
 gi|315269007|gb|ADT95860.1| hypothetical protein Sbal678_3728 [Shewanella baltica OS678]
          Length = 390

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I  +R+   + L    Q  +  G NG GK+N+ +A+  L+
Sbjct: 2  LTTLAIFNYRSLREIVLPLG-QLNLITGANGSGKSNLYKALRLLA 45


>gi|320168353|gb|EFW45252.1| zinc ion binding protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1396

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYAS---LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ L+I   R+++S     + F    T+ VG NG GKT I+E + +++ G
Sbjct: 4  IERLSIQGIRSFSSNDACDIRFQTPLTVIVGHNGAGKTTIIECLRYVTTG 53


>gi|312135151|ref|YP_004002489.1| DNA repair protein recn [Caldicellulosiruptor owensensis OL]
 gi|311775202|gb|ADQ04689.1| DNA repair protein RecN [Caldicellulosiruptor owensensis OL]
          Length = 551

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 74/211 (35%), Gaps = 37/211 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I        L + FD   TI  G+ G GK+ I++++S L   + F+     +V R
Sbjct: 2   LKRLLIENIAIIDRLDIEFDQGLTILTGETGAGKSIIIDSLSLLLGTK-FK----KEVIR 56

Query: 67  IGS-PSFFSTFARVEG---MEGLADISIKLETR--------DDRSVRCLQIN-------- 106
            G   +  S    +E    ++ L  + I LE                  ++N        
Sbjct: 57  TGCSKACVSAIFEIEKKSTIDALIQMGISLEDNFLIVSREVYSSGKNICRVNNQFVLLST 116

Query: 107 -DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE-- 163
              + + + E++       L     ++         RF  + +  +   ++    D++  
Sbjct: 117 LREITKHIFEIHGQNETHLLNDKRTQLLYID-----RFCGKELEELKAEYKDLYHDYQEK 171

Query: 164 -RLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
            R+      ++T+          +  Q+ E+
Sbjct: 172 KRIYEQ---IITKEEERERQLDLLNYQINEI 199


>gi|312898599|ref|ZP_07757989.1| segregation protein SMC [Megasphaera micronuciformis F0359]
 gi|310620518|gb|EFQ04088.1| segregation protein SMC [Megasphaera micronuciformis F0359]
          Length = 1180

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 92/303 (30%), Gaps = 48/303 (15%)

Query: 11  NISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYADVTR 66
            +  F+++A    L FD   T  VG NG GK+NI +A+ ++      R  R     D+  
Sbjct: 2   ELRGFKSFADKTTLTFDKGITAIVGPNGSGKSNISDAVRWVMGEQNVRQLRGQRAEDIIF 61

Query: 67  IGSPSFF-STFARVEGMEGLADISIKLETRD--------DRSVRCLQINDVVIRVVDE-- 115
            G+ +      A V      +D ++  E R+                IN    R+ D   
Sbjct: 62  SGTDTRRPQGVAEVSLYFDNSDKTLDTEFREVVVTRRYFRSGDSEFYINKRHCRLKDIHN 121

Query: 116 ------LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAID-------------PR 154
                 + +          +DRI +    ERR   +    +                   
Sbjct: 122 LFADTGIGQDSMAVIGQNRVDRILNSRPEERRIIFEEVAGISRFKGRKEEGLKKICETKA 181

Query: 155 HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
           +  R+ D   L+  R   LT           ++ +       + +  ++    L S    
Sbjct: 182 NLERIHDMTVLLEERLEPLTRQVEKLRSFRLLDEERRAYEGTLTLQELKNFERLLSKAEN 241

Query: 215 YVQKENF------------PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
             Q+  F               +  +   ++ +  +     +   A K    R  + + R
Sbjct: 242 IRQQAFFADRNVEKQIEAKERERQRVMASIEAEGARMQALNEAAGAAKSEADRLRERLER 301

Query: 263 RTL 265
             L
Sbjct: 302 YDL 304


>gi|291546670|emb|CBL19778.1| hypothetical protein CK1_16950 [Ruminococcus sp. SR1/5]
          Length = 515

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKT 41
          + I+ L I  F    +  +       +  G+N  GKT
Sbjct: 1  MVIRRLKIKNFGKIRAKDMELSPGINVLYGENESGKT 37



 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 71/195 (36%), Gaps = 20/195 (10%)

Query: 168 GRNRLLTEGYFDSSWCSSIEAQM--AELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
            RN L ++     +   +++A++   E   ++       I AL+      +  E    + 
Sbjct: 329 NRNSLDSDYEEKHTALENLQAELTECEENTEVITPEETEIQALN------MAMETIEALS 382

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
            ++T  +  +  +    +  E     +    MD              + V+  ++ ++I 
Sbjct: 383 GNITDQVGVRLKKRTSEILSEITGGRYQEVLMDEAL----------HISVNTGERIVSIE 432

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
             S G  + +   + +A   L          ++LD++    DE++  A  R +     Q+
Sbjct: 433 RLSRGTLEQIYFALRMAAGELFCKE--EPFPVILDDVFGMYDEERLAAALRWLHKENRQV 490

Query: 346 FMTGTDKSVFDSLNE 360
            ++   K   + L++
Sbjct: 491 IISTCHKREMEILDK 505


>gi|281179661|dbj|BAI55991.1| DNA repair protein RecN [Escherichia coli SE15]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 83/240 (34%), Gaps = 32/240 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       ++  LD         +       +  M  R +L
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTK--PEHQKFLLD--------GYANETSQLQE-MTARYQL 165

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             +   D +    +  + A    ++   +++ +N  +    E+ ++ +  + +L+ +G L
Sbjct: 166 WHQSCRDLAHHQQLSQERA-ARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQL 223


>gi|261837655|gb|ACX97421.1| hypothetical protein KHP_0205 [Helicobacter pylori 51]
          Length = 1047

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 21/133 (15%)

Query: 5   IKI--KFLNISEFRNYA---------SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           +K+  + L + +FRN           +       +  I VG+N VGK+NILEA+      
Sbjct: 1   MKLYKRVLKLHQFRNLGKNLPTELLLNSSFEKHGELVILVGENNVGKSNILEAL------ 54

Query: 54  RGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV- 112
           + F   +  D+       +F      E    L + + +     D S   L+I    +   
Sbjct: 55  KAF---NDTDIKLRNEKDYFKDHESKEATLSLEEETSRNNETIDFSCVDLKIRYKEVSKG 111

Query: 113 VDELNKHLRISWL 125
           + EL+K L +   
Sbjct: 112 LKELSKTLIVYPF 124


>gi|221120167|ref|XP_002165197.1| PREDICTED: similar to SMC5 protein, partial [Hydra magnipapillata]
          Length = 591

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
           +I  L +  F  Y            + +G NG GK++I+ AI 
Sbjct: 283 RIVRLKLKNFLTYDDCEFFPGENLNVVLGPNGTGKSSIVCAIC 325


>gi|254780640|ref|YP_003065053.1| hypothetical protein CLIBASIA_02635 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040317|gb|ACT57113.1| hypothetical protein CLIBASIA_02635 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 110

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 6  KIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          K+  + IS FR +    ++ F    TI  G NG GK+++ EAI +L  G   RR  
Sbjct: 28 KLLDIEISHFRGFTEIQKIEFADHLTIVNGQNGYGKSSLSEAIEWLFYGYTQRRKH 83


>gi|218440059|ref|YP_002378388.1| DNA repair protein RecN [Cyanothece sp. PCC 7424]
 gi|218172787|gb|ACK71520.1| DNA repair protein RecN [Cyanothece sp. PCC 7424]
          Length = 586

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L I  F     L L F  +  +  G+ G GK+ IL+AI  +  G+    A+Y  + R
Sbjct: 2  LSVLRIQNFTLIDQLELEFGTKLNVLTGETGAGKSIILDAIDVVLGGK----ANYR-LIR 56

Query: 67 IGSPSF 72
           G+   
Sbjct: 57 QGTQQA 62


>gi|182440043|ref|YP_001827762.1| putative exonuclease [Streptomyces griseus subsp. griseus NBRC
           13350]
 gi|178468559|dbj|BAG23079.1| putative exonuclease [Streptomyces griseus subsp. griseus NBRC
           13350]
          Length = 1021

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 105/281 (37%), Gaps = 29/281 (10%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDA----QHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           +++  L+I+ F  + A+  + FDA       +  G  G GKT++L+A+ F   G   G R
Sbjct: 1   MRLHRLSITAFGPFGATQDVDFDALSSAGLFLLHGPTGAGKTSVLDAVCFALYGAVPGAR 60

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVDEL 116
           ++  A +    +P+   T  ++E   G   + +       R  +  + +   + +    L
Sbjct: 61  QSPGASLRSDHAPADLPTEVQLELTVGGRRLEVTRSPAQPRPKK--RGDGFTLEKAQSRL 118

Query: 117 NKHLR---ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR----GR 169
             H        L  S   I      E  R +                DF R +R     R
Sbjct: 119 RGHDPERGWQALSKSHQEI----GEELTRLIGMSRDQFCQVVLLPQGDFARFLRSDAEAR 174

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL---GVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            +LL    FD+   +++E ++AEL   G    IA  E I AL+  I +           +
Sbjct: 175 GKLLGRL-FDTRRFAAVEERLAELRRGGEARVIAADERILALAQRIAQAAGPAGGEATPI 233

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           +      G  +    A+ E  A      R+   ++ R L G
Sbjct: 234 AARRGEPGLAE----AVLEWAAVARSTARERLDIAHRVLTG 270


>gi|254248003|ref|ZP_04941324.1| hypothetical protein BCPG_02823 [Burkholderia cenocepacia PC184]
 gi|124872779|gb|EAY64495.1| hypothetical protein BCPG_02823 [Burkholderia cenocepacia PC184]
          Length = 391

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +K L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 3  ALKTLAIANYRSLRELIVPLAA-LNVVTGPNGSGKSSVYRALRLLA 47


>gi|238790201|ref|ZP_04633977.1| hypothetical protein yfred0001_3290 [Yersinia frederiksenii ATCC
          33641]
 gi|238721739|gb|EEQ13403.1| hypothetical protein yfred0001_3290 [Yersinia frederiksenii ATCC
          33641]
          Length = 381

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  L IS +R+   + L    Q  +  G NG GK+++  A+  LS
Sbjct: 2  ITRLAISGYRSLRDVVLELG-QLNVITGANGSGKSSLYRALRLLS 45


>gi|332672426|ref|YP_004421670.1| gp46 recombination endonuclease [Campylobacter phage NCTC12673]
 gi|327493603|gb|AEA86462.1| gp46 recombination endonuclease [Campylobacter phage NCTC12673]
          Length = 548

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 3  NRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          N I  K + +  F  Y     +  F     +  G NG GK+++  A+ +   G+ +   +
Sbjct: 2  NNINFKSITLQNFMKYGNKKTKFEFTNGIHLVTGKNGAGKSSLFLALHYCLFGKTYNGKT 61

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97
             +    +      +  VE      + +IK  T   
Sbjct: 62 IGSLVNNINKKGM--YVEVEMNINGDEFTIKRGTNPS 96


>gi|317029494|ref|XP_001391750.2| structural maintenance of chromosomes protein 4 [Aspergillus niger
           CBS 513.88]
          Length = 1440

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +R+ I  L +  F++YA  ++   F A  +  VG NG GK+N+++A+ F+    GFR + 
Sbjct: 234 SRLIITTLILMNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDALLFVF---GFRASK 290

Query: 61  YAD 63
              
Sbjct: 291 MRQ 293


>gi|291541100|emb|CBL14211.1| Predicted ATP-dependent endonuclease of the OLD family [Roseburia
          intestinalis XB6B4]
          Length = 627

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  ++I  F+    +++       I VG N  GKT ILEAI   S G     A   D
Sbjct: 1  MKLTGIHIKNFKAIHEMKIDSIENALILVGQNNTGKTTILEAIR-ASFGDYHISAEDFD 58


>gi|261491610|ref|ZP_05988193.1| putative OLD family overcome lysogenization defect ATP-dependent
          nuclease [Mannheimia haemolytica serotype A2 str.
          BOVINE]
 gi|261494969|ref|ZP_05991438.1| putative OLD family overcome lysogenization defect ATP-dependent
          nuclease [Mannheimia haemolytica serotype A2 str.
          OVINE]
 gi|261309378|gb|EEY10612.1| putative OLD family overcome lysogenization defect ATP-dependent
          nuclease [Mannheimia haemolytica serotype A2 str.
          OVINE]
 gi|261312736|gb|EEY13856.1| putative OLD family overcome lysogenization defect ATP-dependent
          nuclease [Mannheimia haemolytica serotype A2 str.
          BOVINE]
          Length = 515

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +K + IS FR    L L       + +G+N  GK+++++A+S +
Sbjct: 1  MYLKHIEISGFRGINHLSLQLRPNM-VLIGENAWGKSSLIDALSLI 45


>gi|224476630|ref|YP_002634236.1| DNA repair protein RecN [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222421237|emb|CAL28051.1| similar to DNA repair protein RecN [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 559

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 89/273 (32%), Gaps = 37/273 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2   LQTLTIKQFAIIDELEINFADGLTVLSGETGAGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            G         F        +E L ++ I ++       R +  +   I  V+  N  L 
Sbjct: 57  HGEKKSTIEGIFDIDDNKSVIETLKELDIDIDEDFLLVKREIFSSGKSICKVNNQNVTLH 116

Query: 122 ISWLVPSMDRIFSG-----LSMERRRFLDRMVFAIDPRHRRRMIDFE------------- 163
              L+        G       ++++  L  +    D ++ + +  ++             
Sbjct: 117 DLRLIMQELLDIHGQHETQSLLKKKYHLQLLDSYADGKYDQYLEQYQETYQTYKAKQHEL 176

Query: 164 -------RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
                  + +  R  L+     + S  +  + ++ +L   I   R++    LS  +    
Sbjct: 177 NELESADQALLQRLDLMKFQAEELSEANLQDGEIDQLEADI--KRIQNSENLSVALNAAH 234

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
                          L  + D     +  E+ +
Sbjct: 235 STLTDEQAIPDRLYELSQQLDTINEIIPNEFKE 267


>gi|187932364|ref|YP_001886586.1| DNA repair protein RecN [Clostridium botulinum B str. Eklund 17B]
 gi|187720517|gb|ACD21738.1| DNA repair protein RecN [Clostridium botulinum B str. Eklund 17B]
          Length = 562

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 25/164 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI  F     + + F+    I  G+ G GK+ +++AI ++  G+ F       + R
Sbjct: 2   LIQLNIKNFALIQEITMNFNEGFNILSGETGAGKSILIDAIDYVLGGK-F----SKSLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G    +           L ++ I+L+   D  +  L ++    +    L K    ++L 
Sbjct: 57  TGEDKTYVEAIFTIENSLLKNVLIELDIESDDDM--LIVSRETHQSGRSLIKVNGKTFLA 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
             + +I       R R LD                  + +  RN
Sbjct: 115 SQLKKI-------RERLLDIHGQHQ-----------NQTLLQRN 140


>gi|251796327|ref|YP_003011058.1| DNA repair protein RecN [Paenibacillus sp. JDR-2]
 gi|247543953|gb|ACT00972.1| DNA repair protein RecN [Paenibacillus sp. JDR-2]
          Length = 569

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I        + + F     +  G+ G GK+ +++A+S +  GRG      AD+ R
Sbjct: 2  LRELSIRNLAVIEEVNVSFHHGFHVLTGETGAGKSILIDALSLIVGGRG-----SADMVR 56

Query: 67 IGSP 70
           G  
Sbjct: 57 YGCD 60


>gi|84501765|ref|ZP_00999937.1| DNA repair protein RecN [Oceanicola batsensis HTCC2597]
 gi|84390386|gb|EAQ02945.1| DNA repair protein RecN [Oceanicola batsensis HTCC2597]
          Length = 548

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +      L L F     +  G+ G GK+ +L+++ F+   RG      AD+ R
Sbjct: 2  LRGLDIRDMLIIDRLELEFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RADLVR 56

Query: 67 IGSPSFFST 75
           G+     T
Sbjct: 57 QGAGQGEVT 65


>gi|329118035|ref|ZP_08246748.1| SMC structural maintenance of chromosomes partitioning protein
          [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465923|gb|EGF12195.1| SMC structural maintenance of chromosomes partitioning protein
          [Neisseria bacilliformis ATCC BAA-1200]
          Length = 1162

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 40.7 bits (94), Expect = 0.41,   Method: Composition-based stats.
 Identities = 39/196 (19%), Positives = 60/196 (30%), Gaps = 24/196 (12%)

Query: 165  LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
             +              S  S +  Q+  LG     A  E+  A         Q E+    
Sbjct: 930  ALEQAAASAGRPSALGSSISELTRQIEALGAVNLAALQELEEARERDGYYRSQSEDV--- 986

Query: 225  KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD----- 279
              S    L+    Q     KE +        +       TL G   + L +   D     
Sbjct: 987  -QSAIALLEEAIAQIDSKTKERFKATFDAVNEKVQTFFPTLFGGGEATLHMVGDDLLTAG 1045

Query: 280  ----------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
                      K  TI   S GE+ +  + +  A   L       AP  LLDE+ A LD+ 
Sbjct: 1046 VSIMARPPGKKNATIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDA 1100

Query: 330  KRNALFRIVTDIGSQI 345
              +    +V ++ +Q 
Sbjct: 1101 NTSRFCNLVKEMSAQT 1116


>gi|282896980|ref|ZP_06304983.1| ATPase-like protein [Raphidiopsis brookii D9]
 gi|281198133|gb|EFA73026.1| ATPase-like protein [Raphidiopsis brookii D9]
          Length = 440

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +    ++ F++Y +  L   +  T+ +G N  GK+N LE + FLS
Sbjct: 5  LTEFTLANFKSYRTSHLPLGS-LTVLIGANAAGKSNALEGLRFLS 48


>gi|194875725|ref|XP_001973652.1| GG16203 [Drosophila erecta]
 gi|190655435|gb|EDV52678.1| GG16203 [Drosophila erecta]
          Length = 1025

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I  +   +F +Y+ +         +  G NG GK+ I+ AI  L  G       R AS 
Sbjct: 15  RIHSVYCKDFVSYSEITFYPKHYLNVLTGPNGSGKSTIVSAI-ILGLGGEPILLDRSASV 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           AD  +    S  +   RV G   L          +        +ND      + L 
Sbjct: 74  ADYIQSNKTSA-TIIVRVYGR-TLNTTETFRRIINSNGSSTFSVNDKDTSKKNFLA 127


>gi|95930184|ref|ZP_01312923.1| DNA repair protein RecN [Desulfuromonas acetoxidans DSM 684]
 gi|95133878|gb|EAT15538.1| DNA repair protein RecN [Desulfuromonas acetoxidans DSM 684]
          Length = 557

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 88/274 (32%), Gaps = 49/274 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I        L++ F     +  G+ G GK+ I++A+  L   R       +D+ R
Sbjct: 2   LTDLSIKNLAVIEQLQVNFGPGFNVLSGETGAGKSIIIDAMGLLLGQR-----VRSDLVR 56

Query: 67  IGSPSFFSTFAR-----------VEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVD 114
            G  +                  ++ M+   D  + +     R  +  + +N        
Sbjct: 57  TGEETANVEAVFSLQQQPGVRQLLQEMDFDDDDELVIRRSLSRQGKNRVYVNGA------ 110

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            +    ++  L   M  IF           D+        H R +  F +       LL 
Sbjct: 111 -MATLAQLQQLTAPMLAIFGQH--------DQQQLQRVENHLRLLDGFGQC----QELLG 157

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           +         +++ Q+            E +        + +   +F H +++      G
Sbjct: 158 DYQHHYRQWLTLQKQL------------ETLQQSERDRADRIDLLSFQHQEITAAALQSG 205

Query: 235 KFDQSFCA-LKEEYAKKLFDGRKMDSMSRRTLIG 267
           + ++     L+ ++A++L+ G +          G
Sbjct: 206 EDEELAAERLRLQHAERLYAGCQQGYERLYADQG 239


>gi|227327921|ref|ZP_03831945.1| hypothetical protein PcarcW_11545 [Pectobacterium carotovorum
          subsp. carotovorum WPP14]
          Length = 394

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +KI F  I+      +L L F     I  G NG+GK+ IL++I F+   R    +S    
Sbjct: 1  MKIIFTEINHIGGIKNLTLNFTESMNIICGPNGIGKSTILDSIGFM-FSRS--GSSIKKN 57

Query: 65 TRIGSPSFFSTFARVEGMEGLADIS 89
           R           +++  EG  +++
Sbjct: 58 IRSNDDG--KINLQIKNAEGQQELT 80


>gi|303290725|ref|XP_003064649.1| condensin complex component [Micromonas pusilla CCMP1545]
 gi|226453675|gb|EEH50983.1| condensin complex component [Micromonas pusilla CCMP1545]
          Length = 1026

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + ++ + I  F++YA   +   FD       G NG GK+NIL++I F
Sbjct: 1  MFVEEVCIDGFKSYAQRTVVPAFDPLFNAITGLNGSGKSNILDSICF 47


>gi|145329965|ref|NP_001077968.1| TTN7 (TITAN7); ATP binding / protein binding [Arabidopsis thaliana]
 gi|145360381|ref|NP_180285.4| TTN7 (TITAN7); ATP binding / protein binding [Arabidopsis thaliana]
 gi|62319915|dbj|BAD93989.1| putative chromosome associated protein [Arabidopsis thaliana]
 gi|330252854|gb|AEC07948.1| structural maintenance of chromosome 3 (chondroitin sulfate
           proteoglycan 6) [Arabidopsis thaliana]
 gi|330252855|gb|AEC07949.1| structural maintenance of chromosome 3 (chondroitin sulfate
           proteoglycan 6) [Arabidopsis thaliana]
          Length = 1204

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 5   IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRAS 60
           + IK + I  F++Y        F  +    VG NG GK+N   AI F+     +  R + 
Sbjct: 1   MFIKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLR-SE 59

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                           A VE +   +D    ++  + R  R + +  
Sbjct: 60  DRHALLHEGAGHQVVSAFVEIVFDNSDNRFPVDKEEIRLRRTVGLKK 106



 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 69/212 (32%), Gaps = 18/212 (8%)

Query: 144  LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
                +      +++ +  +      R     E     +   + + ++ EL   ++  + E
Sbjct: 962  CSEQLQQFSHVNKKALDQYVNFTEQR----EELQNRQAELDAGDEKIKELITVLDQRKDE 1017

Query: 204  MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL-FDGRKMDSMSR 262
             I      +  + +      ++      +  K        +++       +      + +
Sbjct: 1018 SIERTFKGVAHHFRDVFSELVQDGYGNLIIMKKKDLDNDDEDDDDDDGGREAVTEGRVEK 1077

Query: 263  RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
               +   +  +      +   +   S G++ VV + +  A           AP  L DEI
Sbjct: 1078 YIGV---KVKVSFTGQGETQLMKQLSGGQKTVVALALIFA-----IQRCDPAPFYLFDEI 1129

Query: 323  SAHLDEDKRNALFRIVT----DIGSQIFMTGT 350
             A LD   R A+  ++     D G+Q F+T T
Sbjct: 1130 DAALDPQYRTAVGNLIRRLADDYGTQ-FITTT 1160


>gi|41584495|gb|AAS09910.1| SMC3 [Arabidopsis thaliana]
          Length = 1204

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 5   IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRAS 60
           + IK + I  F++Y        F  +    VG NG GK+N   AI F+     +  R + 
Sbjct: 1   MFIKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLR-SE 59

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                           A VE +   +D    ++  + R  R + +  
Sbjct: 60  DRHALLHEGAGHQVVSAFVEIVFDNSDNRFPVDKEEIRLRRTVGLKK 106



 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 69/212 (32%), Gaps = 18/212 (8%)

Query: 144  LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
                +      +++ +  +      R     E     +   + + ++ EL   ++  + E
Sbjct: 962  CSEQLQQFSHVNKKALDQYVNFTEQR----EELQNRQAELDAGDEKIKELITVLDQRKDE 1017

Query: 204  MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL-FDGRKMDSMSR 262
             I      +  + +      ++      +  K        +++       +      + +
Sbjct: 1018 SIERTFKGVAHHFRDVFSELVQDGYGNLIIMKKKDLDHDDEDDDDDDGGREAVTEGRVEK 1077

Query: 263  RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
               +   +  +      +   +   S G++ VV + +  A           AP  L DEI
Sbjct: 1078 YIGV---KVKVSFTGQGETQLMKQLSGGQKTVVALALIFA-----IQRCDPAPFYLFDEI 1129

Query: 323  SAHLDEDKRNALFRIVT----DIGSQIFMTGT 350
             A LD   R A+  ++     D G+Q F+T T
Sbjct: 1130 DAALDPQYRTAVGNLIRRLADDYGTQ-FITTT 1160


>gi|23476966|emb|CAD43403.2| SMC3 protein [Arabidopsis thaliana]
          Length = 1205

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 5   IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRAS 60
           + IK + I  F++Y        F  +    VG NG GK+N   AI F+     +  R + 
Sbjct: 1   MFIKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLR-SE 59

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                           A VE +   +D    ++  + R  R + +  
Sbjct: 60  DRHALLHEGAGHQVVSAFVEIVFDNSDNRFPVDKEEIRLRRTVGLKK 106



 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 69/212 (32%), Gaps = 18/212 (8%)

Query: 144  LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
                +      +++ +  +      R     E     +   + + ++ EL   ++  + E
Sbjct: 963  CSEQLQQFSHVNKKALDQYVNFTEQR----EELQNRQAELDAGDEKIKELITVLDQRKDE 1018

Query: 204  MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL-FDGRKMDSMSR 262
             I      +  + +      ++      +  K        +++       +      + +
Sbjct: 1019 SIERTFKGVAHHFRDVFSELVQDGYGNLIIMKKKDLDNDDEDDDDDDGGREAVTEGRVEK 1078

Query: 263  RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
               +   +  +      +   +   S G++ VV + +  A           AP  L DEI
Sbjct: 1079 YIGV---KVKVSFTGQGETQLMKQLSGGQKTVVALALIFA-----IQRCDPAPFYLFDEI 1130

Query: 323  SAHLDEDKRNALFRIVT----DIGSQIFMTGT 350
             A LD   R A+  ++     D G+Q F+T T
Sbjct: 1131 DAALDPQYRTAVGNLIRRLADDYGTQ-FITTT 1161


>gi|329901688|ref|ZP_08272886.1| DNA repair protein RecN [Oxalobacteraceae bacterium IMCC9480]
 gi|327549044|gb|EGF33650.1| DNA repair protein RecN [Oxalobacteraceae bacterium IMCC9480]
          Length = 551

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 86/254 (33%), Gaps = 35/254 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F     + L F A  ++  G+ G GK+ +++A++    GRG      A V R
Sbjct: 2   LRTLTIRDFVIVDLIELDFSAGFSVLTGETGAGKSILIDALALALGGRG-----DASVVR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLA-----DISIKLETRDDRSVR-CLQINDVV--IRVV 113
            G+        +ST A  +           D  + L    D + R    IN +      +
Sbjct: 57  DGAAKADISADYSTHAEADAWLAAHDFASPDGGVLLRRVIDNAGRSKAYINGIAATATQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR--RRMIDFERLMRGRNR 171
            +L + L       +   +    +   R+ LD      +           +  + + R  
Sbjct: 117 RDLGELLVDIHGQHAHQSLLKTDAQ--RQLLDTQASLQEQVRAVGTAYKSWRAVGKQREE 174

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
             T           +E Q+ EL            + L+    E+ +  +  H +LS    
Sbjct: 175 FETNAKNVLLERERLEWQVGEL------------DKLAPQDGEWTE-ISSEHSRLSHAAS 221

Query: 232 LDGKFDQSFCALKE 245
           L      +  A+ E
Sbjct: 222 LIDGAQDALTAISE 235


>gi|190890715|ref|YP_001977257.1| chromosome partition protein [Rhizobium etli CIAT 652]
 gi|190695994|gb|ACE90079.1| chromosome partition protein [Rhizobium etli CIAT 652]
          Length = 1153

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFNKLRLVGFKSFVEPTEFIIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  E  A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVALYLDNGERTAPAAFNDADEIQVTRRIEREQGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR+ L+
Sbjct: 121 ESRAKDVQLLFADASTGARSPSMVGQGRIGELIQAKPQARRQLLE 165


>gi|161830993|ref|YP_001597149.1| DNA repair protein RecN [Coxiella burnetii RSA 331]
 gi|161762860|gb|ABX78502.1| DNA repair protein RecN [Coxiella burnetii RSA 331]
          Length = 556

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 80/278 (28%), Gaps = 50/278 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    SL L FD   T+  G+ G GK+ I++A++ L+ G      +   + R
Sbjct: 2   LTHIHIKNFIVVESLSLDFDKGLTVLTGETGAGKSIIVDAVN-LALGE----RADTAIIR 56

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             +     S    +             +  D       +I     R    +N H     L
Sbjct: 57  KEADQCDISLCFDISNNSDAQAWLKAKDFADGFDCIVRRIIFPDGRSRSTINGHPCTQQL 116

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +              R F    +  I  +H                LL            
Sbjct: 117 I--------------REFA-HFILQIHGQH------------QHQTLLKRERQQQ----- 144

Query: 186 IEAQMAELGVKINIARVEM---------INALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                A     ++  R +          +N L+        + +   ++       +   
Sbjct: 145 WLDNFAHHHELLDKIRQDYFQWKNLQTELNQLNEQAKNRDHELSL--LRYQFEELENANL 202

Query: 237 DQSFCALKEEYAKKLFDGRKM-DSMSRRTLIGPHRSDL 273
            +       +  ++L + + + + +++   +     ++
Sbjct: 203 QEGEWKTLSQQHQQLHNAQSLIEKLTQAITLTVQSDEI 240


>gi|317476594|ref|ZP_07935839.1| DNA repair protein RecN [Bacteroides eggerthii 1_2_48FAA]
 gi|316907190|gb|EFV28899.1| DNA repair protein RecN [Bacteroides eggerthii 1_2_48FAA]
          Length = 553

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 76/257 (29%), Gaps = 38/257 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F +  ++  G+ G GK+ IL AI  L    +  +  R+ +  
Sbjct: 2   LRSLYIQNYALIEKLDIDFGSGFSVITGETGAGKSIILGAIGLLLGQRADVKSIRQGAAK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            V   R   +      F     +E   +  ++ E       R   IND       + EL 
Sbjct: 62  CVIEARFEIAGYGMRPFFEENELEYEDECILRREVYASGKSRAF-INDTPASLVQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           + L           +               V  I       + +++ L R       +  
Sbjct: 121 EQLIDVHSQHQNLLLNKEG-------FQLNVLDILAHDEEELNNYQSLHRE----WKQVQ 169

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            D      +  Q        N A  + I           Q E     +L+     + + +
Sbjct: 170 QDLEDLIVLAEQ--------NKADEDYIR---------FQLEQLEDAQLAAGEQEELELE 212

Query: 238 QSFCALKEEYAKKLFDG 254
               +  EE    LF  
Sbjct: 213 ADTLSHAEEIKAGLFRA 229


>gi|284799617|ref|ZP_06390248.1| putative RecF/RecN/SMC N domain protein [Neisseria subflava
          NJ9703]
 gi|284797531|gb|EFC52878.1| putative RecF/RecN/SMC N domain protein [Neisseria subflava
          NJ9703]
          Length = 635

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70


>gi|212212320|ref|YP_002303256.1| DNA repair protein [Coxiella burnetii CbuG_Q212]
 gi|212010730|gb|ACJ18111.1| DNA repair protein [Coxiella burnetii CbuG_Q212]
          Length = 556

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 80/278 (28%), Gaps = 50/278 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    SL L FD   T+  G+ G GK+ I++A++ L+ G      +   + R
Sbjct: 2   LTHIHIKNFIVVESLSLDFDKGLTVLTGETGAGKSIIVDAVN-LALGE----RADTAIIR 56

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             +     S    +             +  D       +I     R    +N H     L
Sbjct: 57  KEADQCDISLCFDISNNSDAQAWLKAKDFADGFDCIVRRIIFPDGRSRSTINGHPCTQQL 116

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +              R F    +  I  +H                LL            
Sbjct: 117 I--------------REFA-HFILQIHGQH------------QHQTLLKRERQQQ----- 144

Query: 186 IEAQMAELGVKINIARVEM---------INALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                A     ++  R +          +N L+        + +   ++       +   
Sbjct: 145 WLDNFAHHHELLDKIRQDYFQWKNLQTELNQLNEQAKNRDHELSL--LRYQFEELENANL 202

Query: 237 DQSFCALKEEYAKKLFDGRKM-DSMSRRTLIGPHRSDL 273
            +       +  ++L + + + + +++   +     ++
Sbjct: 203 QEGEWKTLSQQHQQLHNAQSLIEKLTQAITLTVQSDEI 240


>gi|281355719|ref|ZP_06242213.1| DNA repair protein RecN [Victivallis vadensis ATCC BAA-548]
 gi|281318599|gb|EFB02619.1| DNA repair protein RecN [Victivallis vadensis ATCC BAA-548]
          Length = 552

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          + F+ IS +       L F     +  G++G GK+ ++ A+  L  GR         V R
Sbjct: 2  LSFIKISNYALIERAELEFGPGFNVVTGESGAGKSILMGAVELLLGGR-----VDRSVVR 56

Query: 67 IGSPSFFST 75
           G+     T
Sbjct: 57 TGADRCEVT 65


>gi|160900853|ref|YP_001566435.1| DNA repair protein RecN [Delftia acidovorans SPH-1]
 gi|160366437|gb|ABX38050.1| DNA repair protein RecN [Delftia acidovorans SPH-1]
          Length = 591

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + +K + + +F    +L L + A  T+  G+ G GK+ +++A+      R     + ADV
Sbjct: 1  MALKRIVLRDFVIVQALDLDWHAGFTVLTGETGAGKSILIDALQLALGAR-----ADADV 55

Query: 65 TRIGS 69
           R G 
Sbjct: 56 VREGC 60


>gi|323342011|ref|ZP_08082244.1| DNA repair protein RecN [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322464436|gb|EFY09629.1| DNA repair protein RecN [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 551

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 74/224 (33%), Gaps = 28/224 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS-----------PGRG 55
           +  L I  F     + + F  +  +F G+ G GK+ +++A++F+S            G+ 
Sbjct: 2   LTHLTIDNFVLIHHISVDFSDRFNVFTGETGAGKSLLVDALNFVSGQRSSASVVGKNGKS 61

Query: 56  FRRASYADVTR-IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
            R     D+ + I        F   +  +  A IS ++           +IN  V+ +  
Sbjct: 62  ARVEVAFDLEKAINLKMKLVAFDLYDEDDEYAVISREMNLEGRS---ICKINQRVVNLST 118

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA-IDPRHRRRMIDFERLMRGRNRLL 173
             +    +  +    +  +        + LD       +  +   +    +  + R R L
Sbjct: 119 VKSCLDGVLDIHSQHETQYLLNPKNHLKLLDEFAQNETERLYYNDLFRKYQEAQMRLRNL 178

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
                +    +    Q+ E            I+ L+  I +Y  
Sbjct: 179 ENSNINPDEIAFASFQLKE------------IHDLNPSIDDYHS 210


>gi|257061172|ref|YP_003139060.1| hypothetical protein Cyan8802_3397 [Cyanothece sp. PCC 8802]
 gi|256591338|gb|ACV02225.1| conserved hypothetical protein [Cyanothece sp. PCC 8802]
          Length = 395

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 5/135 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I  L I  ++ + ++ +    +  +FVG NG GK+ + +   FL      +      +
Sbjct: 1   MQIISLKIKNYKAFQNITINNMPRFCVFVGANGTGKSTLFDVFGFLR--DSLKNNVRQSL 58

Query: 65  -TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV--DELNKHLR 121
             R G     +     E +       +K+  ++      L+I     + +   E+ ++ R
Sbjct: 59  QVRGGFKEVITREHEDEDICFEVKFRMKILDKERLVTYVLKIGLENNKPIIKREMLRYKR 118

Query: 122 ISWLVPSMDRIFSGL 136
            S   P     F   
Sbjct: 119 GSQGSPFHFLDFKNG 133


>gi|118785609|ref|XP_557814.2| AGAP008672-PA [Anopheles gambiae str. PEST]
 gi|116127816|gb|EAL40260.2| AGAP008672-PA [Anopheles gambiae str. PEST]
          Length = 1214

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 84/236 (35%), Gaps = 37/236 (15%)

Query: 8   KFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYAD 63
           + + I+ F++Y    +    D +H + VG NG GK+N   AI F+        R A    
Sbjct: 5   RQIIINGFKSYKLQTVVERLDPKHNVVVGRNGSGKSNFFSAIEFVLSDEYNNLRPAQRVG 64

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
           +   G+    S  A VE +   +  S    +    +    +I   +    D+        
Sbjct: 65  LINKGTSKNRSDSAYVEIVFDHSSASQTTPSPGTET----RIRRTISATKDQYT------ 114

Query: 124 WLVPSMDRIFSGLSMERR---RFLD-RMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
                     +G +  R+     LD   + + +P +  +     +L   R R L +  +D
Sbjct: 115 ---------VNGRNATRKEIDELLDTLGLSSCNPYYIVKQGKVSQLTTARPRQLLQLLYD 165

Query: 180 SSWCSSIEAQMAEL----------GVKINIARVEMINALSSLIMEYVQKENFPHIK 225
                  + ++ E+            +I+  R  + N L  L  +  ++  F  ++
Sbjct: 166 IGGIRVYDEKLKEILKLWQDADKGLQQIHAERTALANRLELLSSQQREQRAFEQLE 221



 Score = 39.9 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 59/188 (31%), Gaps = 13/188 (6%)

Query: 183  CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
               +E   A     I   R +  ++L         + NF  I   L     G+       
Sbjct: 1009 LQQLEQSRALHDASIQQLRAQRTDSLERTFDSV--RRNFGEIFSKLVPAGCGQLSLQTAD 1066

Query: 243  LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVL-VGIFL 301
            L E     +      D           R ++      + +   +  +G QK ++ + +  
Sbjct: 1067 LDEAAEGAIERTDHPDGGEPVDRYVGLRLEVSFRGNGELMREMNALSGGQKTLVAIALIF 1126

Query: 302  AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
            A           AP  L DEI   LD   R  +   +  +   SQ F+T T +     L 
Sbjct: 1127 A-----IQRNKPAPFYLFDEIDQALDAQHRKVIAGEIAALSASSQ-FITITFRREL--LE 1178

Query: 360  ETAKFMRI 367
              AK+  +
Sbjct: 1179 HAAKYFGV 1186


>gi|66732758|gb|AAY53349.1| gp46 [Listeria phage P100]
          Length = 126

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 12/124 (9%)

Query: 8   KFLNISEFRNYASLRLVFDA-QHTIFVGDN---------GVGKTNILEAISFLSPGRGFR 57
           K + I  F +   + L  D     +  G N         G GKT++++AI++   G+   
Sbjct: 5   KKVKIKNFLSIKDMELNLDKQGLVLIEGKNKTNEAFKSNGAGKTSMIDAITYAIFGKTVG 64

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                 V         +     E         I+   +D +    +++     +   E +
Sbjct: 65  GLKSDSVVNNKEKKNTAVILDFE--VDKNKYRIERYRKDKKEGNIVKLYQGKKQYYKEYS 122

Query: 118 KHLR 121
              R
Sbjct: 123 GQHR 126


>gi|325292183|ref|YP_004278047.1| chromosome segregation protein [Agrobacterium sp. H13-3]
 gi|325060036|gb|ADY63727.1| chromosome segregation protein [Agrobacterium sp. H13-3]
          Length = 1155

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFNKLRVVGFKSFVEPSEFIIEPGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDRS-VRCLQINDV 108
             DV   G     + +       ++  +  A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVGLYLDNSDRTAPAAFNDADEIQVTRRIERENGSVYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        + +     RR+ L+
Sbjct: 121 EARAKDVQLLFADASTGARSPSMVGQGRIGELINAKPQARRQLLE 165


>gi|321469575|gb|EFX80555.1| hypothetical protein DAPPUDRAFT_318525 [Daphnia pulex]
          Length = 1247

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYAD 63
           +K++ +  F++Y    R+      +  +G NG GK+N ++A+SF+   +    R    AD
Sbjct: 8   LKYIEVENFKSYLGFQRIGPLKNFSAVIGPNGSGKSNFMDAVSFVMGEKTQTLRVKRLAD 67

Query: 64  VTRIGS--PSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +   G+      S  A+V  +  L D   +K            + ND  +       + 
Sbjct: 68  LI-HGASINKAVSNSAKVSAIFELEDKTELKFTRLVSHGSSEHRFNDETVNSSRYFAEL 125


>gi|83319729|ref|YP_424468.1| structural maintenance of chromosomes (SMC) superfamily protein
           [Mycoplasma capricolum subsp. capricolum ATCC 27343]
 gi|83283615|gb|ABC01547.1| structural maintenance of chromosomes (SMC) superfamily protein
           [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 988

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 83/238 (34%), Gaps = 42/238 (17%)

Query: 7   IKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K +  S F+++A L +  F+   T  VG NG GK+NI +AI +       +  R +   
Sbjct: 4   LKQIRASGFKSFADLTVMDFNYDMTGVVGPNGSGKSNITDAIRWTLGEQSTKTLRGSKMD 63

Query: 63  DVTRIGSPS-FFSTFARV--------EGMEGLADISIKLETRDDRSVR--CLQINDVVIR 111
           D+   G+     +  A V        E    +   ++++  + D++ R     IN    +
Sbjct: 64  DIVFSGNNEKKAADVAEVTLVFNNIHENFSSIKSDTVEITRKFDKNTRESEFYINSNKCK 123

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
           + D  +  L    L  S   I S              +R   D             +  +
Sbjct: 124 LKDVQSIALEA-GLTRSSIAIISQGTVANFTESKPETKREIFDD---------AAGVSKY 173

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           ++  +     L +   + +    I         +    R+  +   S   +EY QK N
Sbjct: 174 KKRKKETLSKLEKATENLTRLEDI--------AREISRRLPNLERQSKKALEYEQKVN 223


>gi|109899753|ref|YP_663008.1| hypothetical protein Patl_3452 [Pseudoalteromonas atlantica T6c]
 gi|109702034|gb|ABG41954.1| hypothetical protein Patl_3452 [Pseudoalteromonas atlantica T6c]
          Length = 519

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 7  IKFLNISEFRNYASL--RLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          IK + I +FR+  S+   L F     IFVG N  GK+N+L A++  
Sbjct: 4  IKSVQIRKFRSLKSVTKNLEFSD-LNIFVGQNDQGKSNLLRALNLF 48


>gi|291443682|ref|ZP_06583072.1| DNA repair protein recN [Streptomyces roseosporus NRRL 15998]
 gi|291346629|gb|EFE73533.1| DNA repair protein recN [Streptomyces roseosporus NRRL 15998]
          Length = 575

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 49/246 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +   +
Sbjct: 1   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADPAL 50

Query: 65  TRIGSPSFFSTFARVEGMEGLA-------------DISIKLET---RDDRSVRCLQINDV 108
            R+G+ +      R+   EG A             D ++ +      + RS   L    V
Sbjct: 51  VRVGAKAA-VVEGRITVSEGDAAALRAEEAGAELDDGALLISRTVSAEGRSRAHLGGRSV 109

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRMIDFERLMR 167
            + V+ EL   L           +       +R  LDR     ++  H +    + R   
Sbjct: 110 PVGVLTELADELVAVHGQTDQQGLLK--PARQRGALDRYAGDGVEVPHAKYAAAYRR--- 164

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                            ++  ++ EL ++    R +  + L   + E    E  P   + 
Sbjct: 165 ---------------LRAVATELDELTIR-ARERAQEADLLRFGLNEVAAVEPLPGEDVE 208

Query: 228 LTGFLD 233
           L    +
Sbjct: 209 LAAEAE 214


>gi|239940252|ref|ZP_04692189.1| putative recombination and DNA repair protein [Streptomyces
           roseosporus NRRL 15998]
          Length = 581

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 80/246 (32%), Gaps = 49/246 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +   +
Sbjct: 7   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADPAL 56

Query: 65  TRIGSPSFFSTFARVEGMEGLA-------------DISIKLET---RDDRSVRCLQINDV 108
            R+G+ +      R+   EG A             D ++ +      + RS   L    V
Sbjct: 57  VRVGAKAA-VVEGRITVSEGDAAALRAEEAGAELDDGALLISRTVSAEGRSRAHLGGRSV 115

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRMIDFERLMR 167
            + V+ EL   L           +       +R  LDR     ++  H +    + R   
Sbjct: 116 PVGVLTELADELVAVHGQTDQQGLLK--PARQRGALDRYAGDGVEVPHAKYAAAYRR--- 170

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                            ++  ++ EL ++    R +  + L   + E    E  P   + 
Sbjct: 171 ---------------LRAVATELDELTIR-ARERAQEADLLRFGLNEVAAVEPLPGEDVE 214

Query: 228 LTGFLD 233
           L    +
Sbjct: 215 LAAEAE 220


>gi|153853414|ref|ZP_01994823.1| hypothetical protein DORLON_00812 [Dorea longicatena DSM 13814]
 gi|149754200|gb|EDM64131.1| hypothetical protein DORLON_00812 [Dorea longicatena DSM 13814]
          Length = 435

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPG 53
          M + IKI  L I   +   ++++       TI  G+N  GKT++L++I++   G
Sbjct: 1  MADSIKINKLEIENVKRIKAVKIEPTKNGLTIVGGNNNQGKTSVLDSIAWALGG 54


>gi|83721408|ref|YP_442682.1| hypothetical protein BTH_I2161 [Burkholderia thailandensis E264]
 gi|167619738|ref|ZP_02388369.1| hypothetical protein BthaB_25767 [Burkholderia thailandensis Bt4]
 gi|83655233|gb|ABC39296.1| conserved hypothetical protein [Burkholderia thailandensis E264]
          Length = 392

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 4  LTALAIANYRSLRDLIVPL-ATLNVITGPNGSGKSSLYRALRLLA 47


>gi|18311710|ref|NP_558377.1| hypothetical protein PAE0098 [Pyrobaculum aerophilum str. IM2]
 gi|18159111|gb|AAL62559.1| hypothetical protein PAE0098 [Pyrobaculum aerophilum str. IM2]
          Length = 327

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
            +IS +R   SL L  +    + VG NG GK+++LEA+   +    
Sbjct: 2  RFSISGYRCL-SLELELED-FLVVVGPNGSGKSSLLEALYLAASRGS 46


>gi|150391670|ref|YP_001321719.1| SMC domain-containing protein [Alkaliphilus metalliredigens QYMF]
 gi|149951532|gb|ABR50060.1| SMC domain protein [Alkaliphilus metalliredigens QYMF]
          Length = 985

 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 4  RIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           I +  ++IS  R +   + + F    TI +  NG GKT I EAI  L+     + +   
Sbjct: 3  NIHLNKISISNARRFAKDVEINFGKGATILLAPNGTGKTTIFEAIE-LALSGSLK-SKLG 60

Query: 63 D----VTRIGSPSF 72
          D    + R G    
Sbjct: 61 DPPNALIRDGKKEL 74


>gi|325266560|ref|ZP_08133237.1| SMC structural maintenance of chromosomes partitioning protein
           [Kingella denitrificans ATCC 33394]
 gi|324982003|gb|EGC17638.1| SMC structural maintenance of chromosomes partitioning protein
           [Kingella denitrificans ATCC 33394]
          Length = 1166

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 54/126 (42%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1   MRLTQIKLTGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDRSVR-CLQINDV 108
             DV   G+ +   +  A VE +   +D            + ++ +  R       IN+ 
Sbjct: 61  MQDVIFNGAATRRPAPRASVELVFDNSDHSLQGAWGQYAEVSIKRQLTRQGESSYFINNQ 120

Query: 109 VIRVVD 114
            +R  D
Sbjct: 121 PVRRRD 126



 Score = 36.0 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              +  +I   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +   ++
Sbjct: 1055 GKRNSSIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCKL 1109

Query: 338  VTDIGSQI 345
            V  + +Q 
Sbjct: 1110 VKQMSAQT 1117


>gi|242374092|ref|ZP_04819666.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W1]
 gi|242348217|gb|EES39819.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W1]
          Length = 978

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 77/238 (32%), Gaps = 37/238 (15%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + ++ + + L  +++    + +     
Sbjct: 729 YHNNLNRFNDLTKYLENQNYSYEMSSKLSEKTTAQLDEEDSTLARQVDEYNDQYLEMQAE 788

Query: 207 --ALSSLIMEYVQKENFPHIKLSLTGF--------LDGKFDQSFCALKEEYAKKLFDGRK 256
              L++ I          H++               D         L EE+ K++ D R 
Sbjct: 789 VSDLNAQINHMETDTTLAHLRHEYYSLKNRLNDIARDWASLSYLQNLVEEHIKQIKDKRL 848

Query: 257 MDSMSR------------RTLIGPHRSD-LIVDYCDKAI-TIAHGSTGEQKVVLVGIFLA 302
              ++              T+I     D + V + +  +      S   ++++ V + ++
Sbjct: 849 PQVINEAISIFKYLTNNAYTMINYSEDDTIRVKHANGQVFEPMELSQSTKELLYVALRIS 908

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIF-MTGTDKSVFDS 357
             +++         +++D+   H D+ ++  +   + D+    Q+   T T  ++  S
Sbjct: 909 LIKVLKPYY--PFPIIVDDAFVHFDKHRKERMLNYLRDLSKNYQVLYFTCTKDNMIPS 964


>gi|190341603|gb|ACE74878.1| RecN [Cronobacter genomosp. 1]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPHAGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|167581621|ref|ZP_02374495.1| hypothetical protein BthaT_25989 [Burkholderia thailandensis
          TXDOH]
          Length = 392

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 4  LTALAIANYRSLRDLIVPL-ATLNVITGPNGSGKSSLYRALRLLA 47


>gi|311067551|ref|YP_003972474.1| DNA ATP-dependent repair enzyme [Bacillus atrophaeus 1942]
 gi|310868068|gb|ADP31543.1| DNA ATP-dependent repair enzyme [Bacillus atrophaeus 1942]
          Length = 1130

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 52/284 (18%), Positives = 102/284 (35%), Gaps = 39/284 (13%)

Query: 12  ISEFRNYASLRLVFD----AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
           +  FR      + FD    A      G  G GK++IL+A++    G+  R A+       
Sbjct: 11  LHSFR--EEQTIDFDGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILN 68

Query: 68  GSPSFFSTFA------------RVEGMEGLAD-------ISIKLETRDDRSVRCLQINDV 108
            +    S               +VE +    D       +   +E +D+++V   + N+V
Sbjct: 69  HAEDQLSVSFTFALQSNHQTSYKVERVFKRTDETKVKTALCRFIEIKDEQTVLADKANEV 128

Query: 109 VIRVVDELN----KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
             +V + L        R   L       F  L    RR + + +F ++ ++  R++  ++
Sbjct: 129 NKKVEELLGLTIDDFTRAVVLPQGKFAEFLSLKGAERRHMLQRLFNLE-QYGDRLV--KK 185

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L R     + E     +   + ++ + E G +      + ++     +    +K      
Sbjct: 186 LRRQ----VQEANSKKNEMLAEQSGLGEAGAEALEQAEQALHEAEERLEGMRKK--REQE 239

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-DSMSRRTLIG 267
           K   T   D    Q    + EE  K+L + +   D+M  R   G
Sbjct: 240 KERYTEHQDIWNLQKEKGVYEEEQKRLQEEQPRVDAMRTRLSEG 283


>gi|29654597|ref|NP_820289.1| DNA repair protein [Coxiella burnetii RSA 493]
 gi|29541865|gb|AAO90803.1| DNA repair protein [Coxiella burnetii RSA 493]
          Length = 556

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 80/278 (28%), Gaps = 50/278 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    SL L FD   T+  G+ G GK+ I++A++ L+ G      +   + R
Sbjct: 2   LTHIHIKNFIVVESLSLDFDKGLTVLTGETGAGKSIIVDAVN-LALGE----RADTAIIR 56

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             +     S    +             +  D       +I     R    +N H     L
Sbjct: 57  KEADQCDISLCFDISNNSDAQAWLKAKDFADGFDCIVRRIIFPDGRSRSTINGHPCTQQL 116

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +              R F    +  I  +H                LL            
Sbjct: 117 I--------------REFA-HFILQIHGQH------------QHQTLLKRERQQQ----- 144

Query: 186 IEAQMAELGVKINIARVEM---------INALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                A     ++  R +          +N L+        + +   ++       +   
Sbjct: 145 WLDNFAHHHELLDKIRQDYFQWKNLQTELNQLNEQAKNRDHELSL--LRYQFEELENANL 202

Query: 237 DQSFCALKEEYAKKLFDGRKM-DSMSRRTLIGPHRSDL 273
            +       +  ++L + + + + +++   +     ++
Sbjct: 203 QEGEWKTLSQQHQQLHNAQSLIEKLTQAITLTVQSDEI 240


>gi|315122568|ref|YP_004063057.1| DNA repair protein RecN [Candidatus Liberibacter solanacearum
          CLso-ZC1]
 gi|313495970|gb|ADR52569.1| DNA repair protein RecN [Candidatus Liberibacter solanacearum
          CLso-ZC1]
          Length = 558

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I       +L + F A  +I  G+ G GK+ +L+A+     GRG        + R
Sbjct: 2  LTHLSIRNIVIIENLDIDFSAGLSILSGETGSGKSIVLDALFLAIGGRG-----DGGLVR 56

Query: 67 IGSPSFFSTFA 77
            +        
Sbjct: 57 RHTEKGQVIAV 67


>gi|306812467|ref|ZP_07446665.1| recombination and repair protein [Escherichia coli NC101]
 gi|305854505|gb|EFM54943.1| recombination and repair protein [Escherichia coli NC101]
 gi|324005814|gb|EGB75033.1| DNA repair protein RecN [Escherichia coli MS 57-2]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 83/240 (34%), Gaps = 32/240 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       ++  LD         +       +  M  R +L
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTK--PEHQKFLLD--------GYANETSQVQE-MTARYQL 165

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             +   D +    +  + A    ++   +++ +N  +    E+ ++ +  + +L+ +G L
Sbjct: 166 WHQSCRDLAHHQQLSQERA-ARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQL 223


>gi|293376097|ref|ZP_06622348.1| putative DNA sulfur modification protein DndD [Turicibacter
          sanguinis PC909]
 gi|292645299|gb|EFF63358.1| putative DNA sulfur modification protein DndD [Turicibacter
          sanguinis PC909]
          Length = 666

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEFR-----NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K K +NI  FR     N     +  +   TI    NG GKT +L+A ++   G+
Sbjct: 1  MKFKSINIINFRQFSGENLLEFSVNDEKNLTIIHAMNGSGKTTLLQAFNWCLYGK 55


>gi|266621271|ref|ZP_06114206.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288867068|gb|EFC99366.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 618

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 25/47 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          ++I  ++I  F+    + +       I VG N  GKT++L+AI  ++
Sbjct: 1  MQITSVHIRNFKAIREMEIHGIENALILVGKNNTGKTSVLDAIRAVA 47


>gi|238922298|ref|YP_002935812.1| hypothetical protein EUBELI_20534 [Eubacterium eligens ATCC
          27750]
 gi|238873970|gb|ACR73678.1| Hypothetical protein EUBELI_20534 [Eubacterium eligens ATCC
          27750]
          Length = 619

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++I++L I  F++   L +       I VG N  GK+ +L+AI
Sbjct: 1  MRIEYLLIRNFKSIRELEINDIEDVLILVGRNNAGKSVVLDAI 43


>gi|225076848|ref|ZP_03720047.1| hypothetical protein NEIFLAOT_01899 [Neisseria flavescens
          NRL30031/H210]
 gi|224951834|gb|EEG33043.1| hypothetical protein NEIFLAOT_01899 [Neisseria flavescens
          NRL30031/H210]
          Length = 1161

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++ +   +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTAPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+    +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNTSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +   ++V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCKLVKEMSAQT 1115


>gi|153868604|ref|ZP_01998426.1| hypothetical protein BGS_0607 [Beggiatoa sp. SS]
 gi|152144076|gb|EDN71574.1| hypothetical protein BGS_0607 [Beggiatoa sp. SS]
          Length = 38

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGV 38
          N +K+K L + +FR + +L + F  Q T+ VG NG 
Sbjct: 2  NDMKLKQLKLIDFRPFKTLNIEFGEQLTVLVGVNGA 37


>gi|186471653|ref|YP_001862971.1| initiation factor 2 associated domain-containing protein
           [Burkholderia phymatum STM815]
 gi|184197962|gb|ACC75925.1| Initiation factor 2 associated domain protein [Burkholderia
           phymatum STM815]
          Length = 680

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
           K+  + I+ F+   +LR+      TI VG NG GK+++L+AI + +    +
Sbjct: 119 KLASVEITNFKAVKNLRVPLSD-VTILVGPNGSGKSSVLQAIHWATRAASY 168



 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 313 FAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
              ++L+DE  AHL  DK+  L   +     +   Q+ +T     +  + +  A  + ++
Sbjct: 383 RPKLILIDEPDAHLHPDKQERLIEALEFASDEFDVQVLLTTHSPHIARAASPAASLLWVN 442

Query: 369 NHQAL 373
           N Q +
Sbjct: 443 NGQVV 447


>gi|134076232|emb|CAK39518.1| unnamed protein product [Aspergillus niger]
          Length = 1309

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           +R+ I  L +  F++YA  ++   F A  +  VG NG GK+N+++A+ F+    GFR + 
Sbjct: 103 SRLIITTLILMNFKSYAGKQIVGPFHASFSSVVGPNGSGKSNVIDALLFVF---GFRASK 159

Query: 61  YAD 63
              
Sbjct: 160 MRQ 162


>gi|29833041|ref|NP_827675.1| DNA recombination and repair protein [Streptomyces avermitilis
           MA-4680]
 gi|29610162|dbj|BAC74210.1| putative DNA recombination and repair protein [Streptomyces
           avermitilis MA-4680]
          Length = 578

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 78/245 (31%), Gaps = 35/245 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +   +
Sbjct: 7   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADPAL 56

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            RIG+ +     A VEG        I + T     VR     +     +D+    +  + 
Sbjct: 57  VRIGAKN-----AVVEGR-------ITVPTGGSAVVRA----EEAGAELDDGALLISRTV 100

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID-FERLMRGRNRLLTEGYFDSSWC 183
                 R   G        L  +   +   H +       +L R R  L      D    
Sbjct: 101 SAEGRSRAHLGGRSVPVGVLAELADELVAVHGQTDQQGLLKLSRQRQAL------DRYAG 154

Query: 184 SSIEAQMAELGVKINIARV--EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
            ++ A +A+        R     +  +++   E  Q+ +     L     ++ +  +   
Sbjct: 155 DAVAAPLAKYAGAYRRLRAISAELEEITTRARERAQEADMLRFGLDEIAAVEPRAGEDVE 214

Query: 242 ALKEE 246
              E 
Sbjct: 215 LAAEA 219


>gi|323127691|gb|ADX24988.1| putative DNA repair and genetic recombination protein
           [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 73/209 (34%), Gaps = 33/209 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTEVIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----TRDD---RSVRCLQINDVVIRVV- 113
            G+       FFS  A  E +  L    I +E     R D         +IN  ++ +  
Sbjct: 57  RGANKAEIEGFFSVDATPELVACLESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLAT 116

Query: 114 ---------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                    D   +H +   + P + +           F D+    +   ++     ++ 
Sbjct: 117 LKQVGQFLVDIHGQHDQEELMRPQLHQQILDA------FGDKAFEQLKENYQLIFDRYKS 170

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           L R                  +  Q+AE+
Sbjct: 171 LRRQVIDKQKNEKEHKDRIDMLAFQIAEI 199


>gi|298370129|ref|ZP_06981445.1| RecF/RecN/SMC N domain-containing protein [Neisseria sp. oral
          taxon 014 str. F0314]
 gi|298281589|gb|EFI23078.1| RecF/RecN/SMC N domain-containing protein [Neisseria sp. oral
          taxon 014 str. F0314]
          Length = 1161

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  +
Sbjct: 1  MRLSHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGEN 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLTQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQAAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|255658176|ref|ZP_05403585.1| DNA repair protein RecN [Mitsuokella multacida DSM 20544]
 gi|260849484|gb|EEX69491.1| DNA repair protein RecN [Mitsuokella multacida DSM 20544]
          Length = 572

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +K L +  F     +++ F+    I  G+ G GK+ +++++  +   R       AD+ R
Sbjct: 2  LKSLTVWNFALLEHVQVEFEPGLNILTGETGAGKSILIDSLGAVLGAR-----MSADMVR 56

Query: 67 IGSPSFFSTFARVEGMEGLADISIKLE 93
           G       + RVE +  L D S+ L 
Sbjct: 57 SGCD-----WLRVEAVFSLEDESLGLH 78


>gi|156977416|ref|YP_001448322.1| hypothetical protein VIBHAR_06203 [Vibrio harveyi ATCC BAA-1116]
 gi|156529010|gb|ABU74095.1| hypothetical protein VIBHAR_06203 [Vibrio harveyi ATCC BAA-1116]
          Length = 669

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +K+  + IS F+ +  L  + F+   T  +G NG GKT+ L A+S
Sbjct: 1  MKLSKVRISNFQCFGKLTEIEFEEDLTALIGLNGSGKTSTLHALS 45


>gi|118575575|ref|YP_875318.1| chromosome segregation ATPase [Cenarchaeum symbiosum A]
 gi|118194096|gb|ABK77014.1| chromosome segregation ATPase [Cenarchaeum symbiosum A]
          Length = 1175

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + I+ + I  F+++   +  + F        G NG GK+NIL+AI F
Sbjct: 2  VHIRKVEIFGFKSFGFRNTSVEFRPGLVSISGPNGSGKSNILDAIIF 48


>gi|300309947|ref|YP_003774039.1| DNA repair protein [Herbaspirillum seropedicae SmR1]
 gi|300072732|gb|ADJ62131.1| DNA repair protein [Herbaspirillum seropedicae SmR1]
          Length = 548

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 22/202 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F    ++ L F    ++F G+ G GK+ +++A++    GRG        V R
Sbjct: 2   LRTLTIRDFVIVDAIELEFARGFSVFTGETGAGKSILIDALALALGGRG-----DPSVVR 56

Query: 67  IGSPSFFS---------TFARVEGMEGLADI-SIKLETRDDRSVR-CLQINDVV--IRVV 113
            G+                A +E  E   +   + L    D + R    IN        +
Sbjct: 57  EGAAKADVSADFSATPEVQAWLEEHEFADEHGGVLLRRVIDNAGRSKAYINGSAATAAQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNR 171
            E+ + L       +   +    +   R+ LD     ++           +  L R R +
Sbjct: 117 REVGEMLVDIHGQHAHQSLMKADAQ--RQLLDSQAGLLEQAREVAASYKTWRALARQREQ 174

Query: 172 LLTEGYFDSSWCSSIEAQMAEL 193
              +          +E Q+AEL
Sbjct: 175 FEQDARNVLLERERLEWQVAEL 196


>gi|203283973|ref|YP_002221713.1| P115 protein [Borrelia duttonii Ly]
 gi|203287516|ref|YP_002222531.1| P115 protein [Borrelia recurrentis A1]
 gi|201083416|gb|ACH93007.1| P115 protein [Borrelia duttonii Ly]
 gi|201084736|gb|ACH94310.1| P115 protein [Borrelia recurrentis A1]
          Length = 821

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           ++ + +  F+++     L  ++     VG NG GK+N+L+AI F          R     
Sbjct: 7   LEKIGLLGFKSFVKMQELKLNSSLNFIVGPNGCGKSNLLDAIRFCIGEDNLSILRIKHIT 66

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
           D+  + S S  S FA V       D+SI          R L  +  
Sbjct: 67  DLISV-SKSKESNFAEVTLFFNNEDLSIGDFRDKFYIRRRLYKDGT 111


>gi|153808237|ref|ZP_01960905.1| hypothetical protein BACCAC_02525 [Bacteroides caccae ATCC 43185]
 gi|149129140|gb|EDM20356.1| hypothetical protein BACCAC_02525 [Bacteroides caccae ATCC 43185]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 15/200 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  RR +  
Sbjct: 2   LRSLYIQNYALIEKLDISFETGFSVITGETGAGKSIILGAIGLLLGQRADMKAIRRGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            V   R   S      F     +E   +  ++ E +     R   IND       V EL 
Sbjct: 62  CVIEARFDISAYGMRPFFEENELEYDEECILRREVQASGKSRAF-INDTPASLVQVKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           + L           +                D  +     R+       ER +     L 
Sbjct: 121 EQLIDVHSQHQNLLLNKEGFQLNVLDILAHNDAALEKYHSRYAG-WKQTERELSELMELA 179

Query: 174 TEGYFDSSWCSSIEAQMAEL 193
            +   D  +      Q+ E 
Sbjct: 180 EKSRADEDYIRFQLEQLEEA 199


>gi|323484861|ref|ZP_08090217.1| hypothetical protein HMPREF9474_01968 [Clostridium symbiosum
          WAL-14163]
 gi|323401857|gb|EGA94199.1| hypothetical protein HMPREF9474_01968 [Clostridium symbiosum
          WAL-14163]
          Length = 111

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   + +K L + +     S  + FD    I  G+ G GK+ I+ +++     +     +
Sbjct: 1  MLFHLYVKNLALID-----SAEVEFDDGLNILTGETGAGKSVIIGSVNVALGAK-----A 50

Query: 61 YADVTRIGSPSFFSTFA 77
            D+ R G  S +    
Sbjct: 51 SKDLIRQGCDSAYVELV 67


>gi|309389173|gb|ADO77053.1| DNA repair protein RecN [Halanaerobium praevalens DSM 2228]
          Length = 558

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 64/364 (17%), Positives = 114/364 (31%), Gaps = 64/364 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     + + F     I  G+ G GK+ I+ A+  L   R     +  DV R
Sbjct: 2   LSDLQVKNFALINKVNINFKQGLNILSGETGAGKSIIIGALDLLLGAR-----ANTDVIR 56

Query: 67  IGSPSFFSTFAR-------VEGMEGLADIS-------IKLETRDDRSVR--------CLQ 104
            G  S + +          + G+   A I        I  E R++   R         L+
Sbjct: 57  SGKKSAYISAFFQPNELPIINGILTEAGIEKEENGVLIAREIRENGRNRTLINGQLATLK 116

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
           I   + R + +++       L+     +    +     F+   +  +    R     +++
Sbjct: 117 IVKKISRYLIDIHGQHEHQLLLDQGSHLIILDA-----FIGGEIKTLKSEIRDL---YQK 168

Query: 165 LMRGRNRLLTEGYFDSS---WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           L + RN L      DS        I  Q+ E+     +   E    L          E  
Sbjct: 169 LTKIRNELSEIEIDDSERVRELDIINFQIDEIEEAALVK-GEY-QKLKEEYNSLAHGEEI 226

Query: 222 PHIKLSLTGFLDGKFDQSFCALK------------EEYAKKLFDGRKMDSMSRRTLIGPH 269
            +I + L   L G        +             EEY + L D  K  +     L    
Sbjct: 227 YNIAVELLNVLSGDDYSEKGIIDRLAILKKKFSTVEEYNQNLKDLNKKFADIYYIL---- 282

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
             D I D  D      +    E+++ ++   L     +    G      ++ I  +LDE 
Sbjct: 283 -EDFIFDLRDFETNFDYD---EERISIISDRLDLINTLLRKYGEN----VETILLYLDEL 334

Query: 330 KRNA 333
            +  
Sbjct: 335 YQKR 338


>gi|255513288|gb|EET89554.1| SMC domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2]
          Length = 767

 Score = 46.4 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 26/47 (55%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ + +  ++ +   +L F     + +G  G GK+++++AISF   G
Sbjct: 2  IRSIELINWKTHRHTKLEFRKGVNVLIGVMGAGKSSVMDAISFSLFG 48


>gi|327261285|ref|XP_003215461.1| PREDICTED: structural maintenance of chromosomes protein 6-like
           [Anolis carolinensis]
          Length = 1097

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 35/239 (14%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 56  IESIKLKNFMCHSMLGPFEFGSNVNFIVGNNGSGKSAVLTALIVGLGGKAIVTNRGSSVK 115

Query: 63  DVTRIGSPSF-FSTFARVEGMEG------------LADISIKLETRDDRSVRCLQINDVV 109
              + G  S   +   R  G +                IS++             I    
Sbjct: 116 GFVKDGQSSADITIILRNRGEDAYRPEHYGNSITVKQHISLEGHRTYKLQSSTGAIISAK 175

Query: 110 IRVVDELNKHLRISWLVP--------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
              +  +  H  I    P        S   + S    ++ +F       ++    +   D
Sbjct: 176 KEELTAVLDHFNIQVDNPVSVLTQEMSKQFLQSKNEGDKYKFF-MKATQLE----QMEED 230

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           +  +M  ++R   +      +   +  Q++E       AR + I ALS +  +  Q +N
Sbjct: 231 YTYIMATKSRTSDQIEQGEEFLEGLAMQVSE-----KEARYKSIAALSEMQNDLKQLQN 284


>gi|261856129|ref|YP_003263412.1| hypothetical protein Hneap_1535 [Halothiobacillus neapolitanus
          c2]
 gi|261836598|gb|ACX96365.1| conserved hypothetical protein [Halothiobacillus neapolitanus c2]
          Length = 457

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +KI  L + +F+++   +  F  + TI  G N  GK+ IL A++ +  G
Sbjct: 1  MKITELQLEKFKSFELQKFNF-KKITILAGANSAGKSTILNALATILQG 48


>gi|302671266|ref|YP_003831226.1| hypothetical protein bpr_I1910 [Butyrivibrio proteoclasticus
          B316]
 gi|302395739|gb|ADL34644.1| hypothetical protein bpr_I1910 [Butyrivibrio proteoclasticus
          B316]
          Length = 566

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 29/52 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          +++ ++ I  +RN  +L L  +   +  VG+N +GK+N  + +S +   + F
Sbjct: 1  MQLTYVEIQNYRNLGNLELSINRDISFIVGENNIGKSNFQKCLSNIFLCKQF 52


>gi|302185494|ref|ZP_07262167.1| hypothetical protein Psyrps6_04093 [Pseudomonas syringae pv.
           syringae 642]
          Length = 558

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 15/153 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  + I+ F+ + +L L  + QH +  G NG GK+++  A+   +  +  R+ S   + 
Sbjct: 4   RLHQITITNFKAFRNLSLKLEGQHLLVYGANGAGKSSLYWALY--TFLQSARKPSNG-IV 60

Query: 66  RI----GSPSFFSTFARVEGMEGLADISIKLE---TRDDRSVRCLQINDVVIRVVDELNK 118
           +        +  + + + E       I++ L    TR+D + R  Q +   +     L  
Sbjct: 61  KYFDPADPQNLLNLYEQSEAEPRTGQIALTLRDTATRNDTTYRISQTDHGTLNQPAILKG 120

Query: 119 HLRISWLVPSMDRIFSGLSMER--RRFLDRMVF 149
            L   ++     R F G S  R   RF    +F
Sbjct: 121 DLASDFIT---YRFFFGFSHFRNSERFNIWPLF 150


>gi|251773429|gb|EES53978.1| DNA repair protein RecN [Leptospirillum ferrodiazotrophum]
          Length = 550

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 96/277 (34%), Gaps = 33/277 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR----GFRRASYA 62
           +  L ++ F     + L FD   T+  G+ G GK+ +++A+S ++  +      R  S  
Sbjct: 2   LSHLRVASFATIQEISLSFDGGLTVITGETGAGKSLLVDALSLIAGQKPRNLSVRPGSSE 61

Query: 63  DVTRIGSPSFFS------TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
            V      +FFS        A  E +    DI I+     +  +R   +N   +      
Sbjct: 62  AVV----EAFFSPLSSPIPEALSEILTPDDDIVIRRLISSNGRLRQT-VNGQAVSTSQLS 116

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL---- 172
           +  L++  LV   + +        R+FLD              +  E L + R RL    
Sbjct: 117 SLVLQLFDLVGQGESLRMSGGENHRQFLDEYAGTSSLASEYERLRREILAKRRERLEILE 176

Query: 173 -----------LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
                      + E + D+   S    +  EL   ++   + +   L S    Y      
Sbjct: 177 RKANLDRSLSEIRERHEDAHLLSGRPGEFEELSATLSAQ-LNLQEILQSSGRAYQMLSED 235

Query: 222 PHIKLSLTGFLDGKFDQ--SFCALKEEYAKKLFDGRK 256
               L   G + G+ D    F    + +  +L + R+
Sbjct: 236 EESVLVHIGRISGEIDHILGFDPAAQIFRDRLGEARE 272


>gi|222616177|gb|EEE52309.1| hypothetical protein OsJ_34323 [Oryza sativa Japonica Group]
          Length = 140

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYAD 63
           I  + +S F  Y  L      +  + +G NG GK++++ AI+      PG   R AS   
Sbjct: 39  IVEIELSNFMTYHRLACRPGPRLNLVLGPNGSGKSSLVCAIALALAADPGVLGRVASVGA 98

Query: 64  VTRIGSPSFFS 74
             + G  S   
Sbjct: 99  FVKRGEESGHV 109


>gi|169621967|ref|XP_001804393.1| hypothetical protein SNOG_14194 [Phaeosphaeria nodorum SN15]
 gi|160704664|gb|EAT78431.2| hypothetical protein SNOG_14194 [Phaeosphaeria nodorum SN15]
          Length = 1299

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I  L I   R++       + FD   T+ VG NG GKT I+E + + + G
Sbjct: 3  RIDRLMIQGIRSFGPERGETIKFDPPLTLIVGWNGSGKTTIIECLRYATTG 53


>gi|77551601|gb|ABA94398.1| Structural maintenance of chromosome 5, putative [Oryza sativa
           Japonica Group]
          Length = 160

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYAD 63
           I  + +S F  Y  L      +  + +G NG GK++++ AI+      PG   R AS   
Sbjct: 39  IVEIELSNFMTYHRLACRPGPRLNLVLGPNGSGKSSLVCAIALALAADPGVLGRVASVGA 98

Query: 64  VTRIGSPSFFS 74
             + G  S   
Sbjct: 99  FVKRGEESGHV 109


>gi|332668313|ref|YP_004451101.1| hypothetical protein Halhy_6409 [Haliscomenobacter hydrossis DSM
          1100]
 gi|332337127|gb|AEE54228.1| hypothetical protein Halhy_6409 [Haliscomenobacter hydrossis DSM
          1100]
          Length = 593

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I+ L I  F+ +  L + F       +G N  GK+ +L+A++  
Sbjct: 1  MRIRKLRIENFKKFQKLEVEFQE-LDCLIGGNNSGKSTLLQALALF 45


>gi|237737543|ref|ZP_04568024.1| DNA repair protein recN [Fusobacterium mortiferum ATCC 9817]
 gi|229419423|gb|EEO34470.1| DNA repair protein recN [Fusobacterium mortiferum ATCC 9817]
          Length = 560

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 94/263 (35%), Gaps = 32/263 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L F+    +  G+ G GK+ IL  I+ L   +     +  D+ R
Sbjct: 7   LRELKIENLAIIDELDLEFEDGFIVLTGETGAGKSIILSGINLLIGEK-----ATTDMIR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  +  +        E   ++  + E   +        N+V++R   ++N   ++   V
Sbjct: 62  TGEKNLSAQGVFEINSEQREELLHRFEIDAE-------DNEVIVRRTLDINGKGKV--FV 112

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
             +    + L       +D +V     +      +  +L+               +    
Sbjct: 113 NGVRVSLTNLKEIMGTLVD-IVGQHSHQMLLNKNNHIKLL-------------DKFLGDE 158

Query: 187 EAQMAELGVKINIARVEM---INALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             ++ +   ++     E+   I ++     E ++K+ F   +L+    ++ K ++    L
Sbjct: 159 GKELIKNSNRLYNRFREIDNKIESIEKNRREAIEKKEFYEFQLAEIEKINPKKNED-NLL 217

Query: 244 KEEYAKKLFDGRKMDSMSRRTLI 266
           ++EY K    G+  + +    L 
Sbjct: 218 EDEYKKLFNAGKIKEKIENSALY 240


>gi|53719079|ref|YP_108065.1| hypothetical protein BPSL1443 [Burkholderia pseudomallei K96243]
 gi|52209493|emb|CAH35445.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
          Length = 436

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 48 LTALAIAHYRSLRELIVPL-ATLNVITGPNGSGKSSLYRALRLLA 91


>gi|12857523|dbj|BAB31030.1| unnamed protein product [Mus musculus]
          Length = 214

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIISFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|126442152|ref|YP_001059309.1| hypothetical protein BURPS668_2274 [Burkholderia pseudomallei
          668]
 gi|167902305|ref|ZP_02489510.1| hypothetical protein BpseN_08547 [Burkholderia pseudomallei NCTC
          13177]
 gi|126221645|gb|ABN85151.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
          Length = 392

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 4  LTALAIAHYRSLRELIVPL-ATLNVITGPNGSGKSSLYRALRLLA 47


>gi|76810795|ref|YP_333830.1| hypothetical protein BURPS1710b_2434 [Burkholderia pseudomallei
          1710b]
 gi|126452783|ref|YP_001066577.1| hypothetical protein BURPS1106A_2313 [Burkholderia pseudomallei
          1106a]
 gi|134277675|ref|ZP_01764390.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|167719170|ref|ZP_02402406.1| hypothetical protein BpseD_09107 [Burkholderia pseudomallei DM98]
 gi|167738173|ref|ZP_02410947.1| hypothetical protein Bpse14_08905 [Burkholderia pseudomallei 14]
 gi|167815359|ref|ZP_02447039.1| hypothetical protein Bpse9_09459 [Burkholderia pseudomallei 91]
 gi|167845312|ref|ZP_02470820.1| hypothetical protein BpseB_08483 [Burkholderia pseudomallei
          B7210]
 gi|167918572|ref|ZP_02505663.1| hypothetical protein BpseBC_08460 [Burkholderia pseudomallei
          BCC215]
 gi|237812633|ref|YP_002897084.1| SMC domain protein [Burkholderia pseudomallei MSHR346]
 gi|242315967|ref|ZP_04814983.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
 gi|254189141|ref|ZP_04895652.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
          52237]
 gi|254197512|ref|ZP_04903934.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|254260053|ref|ZP_04951107.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
 gi|76580248|gb|ABA49723.1| conserved hypothetical protein [Burkholderia pseudomallei 1710b]
 gi|126226425|gb|ABN89965.1| conserved hypothetical protein [Burkholderia pseudomallei 1106a]
 gi|134251325|gb|EBA51404.1| conserved hypothetical protein [Burkholderia pseudomallei 305]
 gi|157936820|gb|EDO92490.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
          52237]
 gi|169654253|gb|EDS86946.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|237502837|gb|ACQ95155.1| SMC domain protein [Burkholderia pseudomallei MSHR346]
 gi|242139206|gb|EES25608.1| conserved hypothetical protein [Burkholderia pseudomallei 1106b]
 gi|254218742|gb|EET08126.1| conserved hypothetical protein [Burkholderia pseudomallei 1710a]
          Length = 392

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 4  LTALAIAHYRSLRELIVPL-ATLNVITGPNGSGKSSLYRALRLLA 47


>gi|325842999|ref|ZP_08167846.1| putative DNA sulfur modification protein DndD [Turicibacter sp.
          HGF1]
 gi|325489462|gb|EGC91831.1| putative DNA sulfur modification protein DndD [Turicibacter sp.
          HGF1]
          Length = 666

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEFR-----NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K K +NI  FR     N     +  +   TI    NG GKT +L+A ++   G+
Sbjct: 1  MKFKSINIINFRQFSGENLLEFSVNDEKNLTIIHAMNGSGKTTLLQAFNWCLYGK 55


>gi|323450369|gb|EGB06251.1| hypothetical protein AURANDRAFT_72033 [Aureococcus anophagefferens]
          Length = 2222

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 2   TNRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFR 57
           T R+ I+ + +  F++Y     +  F  + +  VG NG GK+N+++A+ F+     +  R
Sbjct: 846 TPRLMIEKMVLENFKSYGGQREIGPFHKRFSSIVGPNGSGKSNVIDAMLFVFGKRAKKLR 905

Query: 58  RASYADVTRIGSPSFFSTFARV 79
               +++           +A+V
Sbjct: 906 LNKVSELIHKSDTYPDLDWAKV 927


>gi|146327056|gb|AAI40006.1| RAD50 protein [Homo sapiens]
          Length = 110

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|40807120|gb|AAH65259.1| SMC4 protein [Homo sapiens]
          Length = 423

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|92116845|ref|YP_576574.1| DNA repair protein RecN [Nitrobacter hamburgensis X14]
 gi|91799739|gb|ABE62114.1| DNA replication and repair protein RecN [Nitrobacter hamburgensis
          X14]
          Length = 561

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M  R+ I+ + +        L + F A   +  G+ G GK+ +L+A +    GRG     
Sbjct: 1  MLARLSIRDIVL-----IERLDIEFAAGLAVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61 YADVTRIGSPSF 72
           A + R G+   
Sbjct: 51 DAGLVRHGADQG 62


>gi|330685689|gb|EGG97330.1| chromosome segregation protein SMC [Staphylococcus epidermidis
           VCU121]
          Length = 1169

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYADVTRIGSPSFFSTFARV 79
           + FD   T  VG NG GK+NI +AI   L     +  R +   D+   G+          
Sbjct: 1   MQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKMEDIIFSGAEH-------- 52

Query: 80  EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
              +  A++ +KL    D   + LQI+  V+ V   L +
Sbjct: 53  RKPQNFAEVKLKL----DNHSKKLQIDAEVVEVTRRLYR 87



 Score = 37.2 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 12/160 (7%)

Query: 198  NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA---KKLFDG 254
               R   +N   + + E   K     I   +   ++ +F ++F A++  ++   K+LF G
Sbjct: 977  LNERYTFLNDQRTDLRE--AKSTLEQIINEMDKEVEDRFKETFHAVQSHFSDVFKQLFGG 1034

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
             + +             D+IV    K +  ++  S GE+ +  + +  A  ++       
Sbjct: 1035 GQAELQLTENDYLAAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKV-----RS 1089

Query: 314  APILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDK 352
            AP ++LDE+ A LDE       + + ++  Q  F+  T +
Sbjct: 1090 APFVILDEVEAALDEANVIRYAQYLNELSDQTQFIVITHR 1129


>gi|321469411|gb|EFX80391.1| putative SMC6, structural maintenance of chromosome protein 6,
          copy A [Daphnia pulex]
          Length = 967

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K + +  F  +  L++ F+ +    +G NG GK+ IL  I
Sbjct: 2  LKLIVLENFLCHDHLKVEFNKKINFIIGKNGSGKSAILTGI 42


>gi|303240103|ref|ZP_07326624.1| SMC protein-like protein [Acetivibrio cellulolyticus CD2]
 gi|302592372|gb|EFL62099.1| SMC protein-like protein [Acetivibrio cellulolyticus CD2]
          Length = 876

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA-----ISFLSPGRGFRRA 59
          +KI+ L++  F  + +  + FD    +  G+N  GK+ I EA     +  L  GR F++ 
Sbjct: 1  MKIEKLDLKGFGKFNNFEIKFDEGFNVVYGENESGKSTI-EAFIKAMLYSLKGGRNFKQG 59

Query: 60 SYAD 63
          +   
Sbjct: 60 ALTP 63


>gi|170766151|ref|ZP_02900962.1| DNA repair protein RecN [Escherichia albertii TW07627]
 gi|170125297|gb|EDS94228.1| DNA repair protein RecN [Escherichia albertii TW07627]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 83/240 (34%), Gaps = 32/240 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +      E ++FL           +  +  ++        L
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTK---SEHQKFLLDGYANETSLLQEMLARYQ--------L 165

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             +   D +    +  + A    ++   +++ +N  +    E+ ++ +  + +L+ +G L
Sbjct: 166 WHQSCRDLAHHQQLSQERA-ARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQL 223


>gi|218130101|ref|ZP_03458905.1| hypothetical protein BACEGG_01688 [Bacteroides eggerthii DSM 20697]
 gi|217987605|gb|EEC53933.1| hypothetical protein BACEGG_01688 [Bacteroides eggerthii DSM 20697]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 71/238 (29%), Gaps = 25/238 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F +  ++  G+ G GK+ IL AI  L    +  +  R+ +  
Sbjct: 2   LRSLYIQNYALIEKLDIDFGSGFSVITGETGAGKSIILGAIGLLLGQRADVKSIRQGAAK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            V   R   +      F     +E   +  ++ E       R   IND       + EL 
Sbjct: 62  CVIEARFEIAGYGMRPFFEENELEYEDECILRREVYASGKSRAF-INDTPASLVQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           + L           +               V  I       + +++ L R       +  
Sbjct: 121 EQLIDVHSQHQNLLLNKEG-------FQLNVLDILAHDEEELNNYQSLHRE----WKQVQ 169

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
            D      +  Q       I       +  L    +   ++E       +L+   + K
Sbjct: 170 QDLEDLIVLAEQNKADEDYIRFQ----LEQLEDAQLAAGEQEELEQEADTLSHAEEIK 223


>gi|71734275|ref|YP_273411.1| hypothetical protein PSPPH_1143 [Pseudomonas syringae pv.
          phaseolicola 1448A]
 gi|71554828|gb|AAZ34039.1| conserved hypothetical protein [Pseudomonas syringae pv.
          phaseolicola 1448A]
          Length = 213

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 3  NRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEA-ISFLSPGRGFRRA 59
          N ++I+ +++S FR +    + +   A+ T  VG N  GKT +L A +      R  R  
Sbjct: 2  NLVRIESVSLSGFRCFGPNPITVDVSAEITTIVGPNAAGKTALLHAMLKLFGVTRAQRTI 61

Query: 60 SYAD 63
            +D
Sbjct: 62 LRSD 65


>gi|307941614|ref|ZP_07656969.1| chromosome segregation protein SMC [Roseibium sp. TrichSKD4]
 gi|307775222|gb|EFO34428.1| chromosome segregation protein SMC [Roseibium sp. TrichSKD4]
          Length = 1152

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 64/165 (38%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++   +  +     T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFSKLRVVGFKSFVEPMEFIIGDGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV   G     + +       +E  +  A  +      +++  R +R S    +IN  
Sbjct: 61  MDDVIFSGSLNRPARNTAEVTLFLENNDRTAPQAFNEADILEVSRRIERESGSNYKINAK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P+M R      + S     RR+ L+
Sbjct: 121 DVRARDVQLLFADASTGARSPAMVRQGQIGELISAKPTSRRKILE 165


>gi|297582324|ref|ZP_06944233.1| DNA repair protein RecN [Vibrio cholerae RC385]
 gi|297533450|gb|EFH72302.1| DNA repair protein RecN [Vibrio cholerae RC385]
          Length = 133

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 19/131 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I+ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSINNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L     +  R    IN   +    
Sbjct: 57  QGEDKTEVSAAFHLDNNLLASRWLEDNELLEGKECILRRIITKDGRSKAFINGSPVPLSQ 116

Query: 113 VDELNKHLRIS 123
           +  L + L   
Sbjct: 117 LKTLGQLLINV 127


>gi|291446406|ref|ZP_06585796.1| predicted protein [Streptomyces roseosporus NRRL 15998]
 gi|291349353|gb|EFE76257.1| predicted protein [Streptomyces roseosporus NRRL 15998]
          Length = 815

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 148/422 (35%), Gaps = 68/422 (16%)

Query: 5   IKIKFLNISEFRNYA-SLRLVF----DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           ++++ + +S  R     L+L F         +  G+NG GK+ I++AI F   GR  R A
Sbjct: 244 VRLRSVELSALRGAPGRLKLTFGKKSSPSSALIFGENGTGKSTIVDAIEFALQGRIGRSA 303

Query: 60  S-YADVT---RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC----------LQI 105
              + +    R  S +  S  ARV+  +G    S++ +   D   R            ++
Sbjct: 304 HYDSPLAPSLRSFSATGESV-ARVDLTDGS---SVERKAVIDSQKRVAAEPRGVRPGFRL 359

Query: 106 NDVVIRVVD--------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-------- 149
             + I+  D         L++   +    P+     +    E+ R L   V         
Sbjct: 360 APITIKRADLSNFLDTEALSRGTVLLDYFPADSDSLAVRPSEKARLLQIEVTELRIKRTA 419

Query: 150 ---------AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS--SIEAQMAELGVKIN 198
                     +DP        F + +R +   + +G   +++      E    EL  ++ 
Sbjct: 420 YSGRLAELIGVDPVDLANSSGFNKAIREK---IYKGKSAATFSEGGGWEHVDIEL-RQLV 475

Query: 199 IARVEMINAL--SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG-- 254
                +   L  +   +E       P +    T  L          +   + +   +   
Sbjct: 476 QQLGSVFGQLGKAKQFIENSDNSLNPVLHRKQTLLLKSALQDVGGEVTSAFRRICHEHPV 535

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAI--TIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
            ++D +   +  GP   DL+V              S   + ++ +  F+A AR  S   G
Sbjct: 536 ERIDIVLGES--GPLSLDLVVKLDGGRNCFPQQLFSEAYRDLLALLFFVAVAR-RSAERG 592

Query: 313 FAPILLLDEISAHLDEDKRNALFRIVTD--IGSQIFMTGTDKSVFDSLN---ETAKFMRI 367
            A +L+LD++   +D   R A    + +     Q+  T  D+   + L     +A+ + +
Sbjct: 593 QAKVLILDDVLQSVDSTVRQAFVEHLLEELSEWQLIFTVHDRFWLERLRSLFNSAQHIFV 652

Query: 368 SN 369
            +
Sbjct: 653 EH 654


>gi|239637671|ref|ZP_04678643.1| DNA repair protein RecN [Staphylococcus warneri L37603]
 gi|239596889|gb|EEQ79414.1| DNA repair protein RecN [Staphylococcus warneri L37603]
          Length = 558

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 82/242 (33%), Gaps = 29/242 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2   LQTLSIKQFAIIDELEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--YVR 56

Query: 67  IGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G   +       ++  +    +   L    D     ++     I    +    +    +
Sbjct: 57  HGEKKAIIEGIFDIDNSKDAIHVLQDLNIDIDEDFLLVK---REIFSSGKSICRINNQTI 113

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
                R         +  LD               + + L++ +  L     +     S 
Sbjct: 114 TLQDLR------KVMQELLDIHGQH----------ETQSLLKQKYHLQLLDDYAGEQYSD 157

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKEN---FPHIKLSLTGFLDGKFDQSFCA 242
           + +Q  E+  +    R E +  L S     +Q+ +   F   +L+     +G+ DQ    
Sbjct: 158 LLSQYHEVFNQYKSKRKE-LEELESADQALLQRLDLMKFQLEELTEASLKEGEVDQLESD 216

Query: 243 LK 244
           +K
Sbjct: 217 IK 218


>gi|121998659|ref|YP_001003446.1| chromosome segregation protein SMC [Halorhodospira halophila SL1]
 gi|121590064|gb|ABM62644.1| chromosome segregation protein SMC [Halorhodospira halophila SL1]
          Length = 1165

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           + +K + ++ F+++     +    +    VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MHLKRIKLAGFKSFVDPTSVPLPGRMVAVVGPNGCGKSNIIDAVRWVMGESSAKHLRGES 60

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGLA--------DISIKLETRDDRSVRCLQIND 107
             DV   GS +       S     +  +G          +IS+K +   +       +N 
Sbjct: 61  MTDVIFSGSSARSPVGKASIELVFDNSDGAIGGQYAAYNEISVKRQVNREGQS-QYSLNG 119

Query: 108 VVIRVVD 114
              R  D
Sbjct: 120 TRCRRRD 126


>gi|256395384|ref|YP_003116948.1| ATPase, RecF-like protein [Catenulispora acidiphila DSM 44928]
 gi|256361610|gb|ACU75107.1| ATPase, RecF-like protein [Catenulispora acidiphila DSM 44928]
          Length = 393

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  +R+  +L +    + T+  G NG GK+++  A+  L+     R  + A + R
Sbjct: 2   ITTLAVENYRSLRNLCI-PVGRLTVVTGANGSGKSSLYRAVRLLADVS--RNGAVAALAR 58

Query: 67  IGS---------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
            G                  R +G    A + ++L    +     +
Sbjct: 59  EGGLSSTLWAGPEQGTKAGRRTQGTVRSAPVGLRLGFGGEEFGYAI 104


>gi|156052513|ref|XP_001592183.1| hypothetical protein SS1G_06422 [Sclerotinia sclerotiorum 1980]
 gi|154704202|gb|EDO03941.1| hypothetical protein SS1G_06422 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1171

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 90/276 (32%), Gaps = 26/276 (9%)

Query: 80   EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSG---- 135
            +  +    I++ +E    +  R +    ++     +  K++R   ++P            
Sbjct: 837  QKEDEQQKIAVLIEKHQKKMERSIARKAILTTSASDCAKNIRDLGVLPDEAFEKYKDYDP 896

Query: 136  -LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
                 R + +   +      +++    + +    R+ L           +SI+  +  L 
Sbjct: 897  KSIQSRLKKVQEALKKYKHVNKKAFEQYNQFTTQRDSLTKRRKELDDSQASIQELVEVLD 956

Query: 195  VKINIARVEMINALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
             + + A       +S    +  ++       +L +    D +  +   + +E        
Sbjct: 957  QRKDEAIERTFKQVSKEFAQIFERLVPAGRGRLVIQRKADRRAREEEDSDEEA------- 1009

Query: 254  GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
                DS+     +G   S       D    I   S G++ +  + +  A           
Sbjct: 1010 ---RDSVENYVGVGISVS--FNSKHDDQQRIQQLSGGQKSLCALALVFA-----IQQCDP 1059

Query: 314  APILLLDEISAHLDEDKRNAL---FRIVTDIGSQIF 346
            AP  L DEI A+LD   R A+    + ++   SQ F
Sbjct: 1060 APFYLFDEIDANLDAQYRTAVAQMLKEISAKQSQAF 1095


>gi|330958612|gb|EGH58872.1| SMC domain-containing protein [Pseudomonas syringae pv.
          maculicola str. ES4326]
          Length = 1011

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 6  KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR-RASYAD 63
          ++K + +S  R + A   +      TI +  NG GKT   EAI     G+  R   +   
Sbjct: 3  QLKSITLSNIRRFSADTTIELSQGATILLAPNGTGKTAFFEAIELGLTGKILRLGDNLLP 62

Query: 64 VTR 66
          + R
Sbjct: 63 IIR 65


>gi|325521158|gb|EGD00059.1| DNA repair protein RecN [Burkholderia sp. TJI49]
          Length = 377

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 30/259 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++      + ++ L    D + R    +N     +  + 
Sbjct: 57  TGCSRADITAEFTPHDRVARWLDEHAFDTEDTVMLRRVIDANGRSRAFVNGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL + L       +   +       +R   D     +       +    R+ R   + + 
Sbjct: 117 ELGEMLVDIHGQHAHQLLMR--PDAQRELFDTHAGLVAE--AANVARAWRVWRDATQAID 172

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                         ++A         ++  ++ L+    E+  + N  H +LS +  L  
Sbjct: 173 AAKAHERELQLEREKLA--------WQLAELDKLAPQPGEW-DEINGEHKRLSHSANLIE 223

Query: 235 KFDQSFCALKEEYAKKLFD 253
               +  AL E     L  
Sbjct: 224 GVRGALNALSESDDAMLAQ 242


>gi|295106912|emb|CBL04455.1| Uncharacterized conserved protein [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 378

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 14/119 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGR---GF----- 56
           +K +++  F+   +  L F  +  +  G N  GKT ++++++F+  S  +    F     
Sbjct: 2   LKHIHLENFKAQQATDLDFS-KINVLTGFNSTGKTTVIQSLAFVKQSLQKKELSFNDYLL 60

Query: 57  RRASYADVT-RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           R   Y +V  R  +         ++G     ++   LE      V    ++       D
Sbjct: 61  RLGDYREVVSRHDTDLPIRISVTLDG--DAEELQYSLEASMGGVVESFAVDGEEGWKWD 117


>gi|282890961|ref|ZP_06299475.1| hypothetical protein pah_c032o043 [Parachlamydia acanthamoebae
          str. Hall's coccus]
 gi|281499176|gb|EFB41481.1| hypothetical protein pah_c032o043 [Parachlamydia acanthamoebae
          str. Hall's coccus]
          Length = 548

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +K L I       ++ + F+    +  G+ G GK+ I+ A++ ++  R     + + + R
Sbjct: 2  LKHLTIRNLILIENVEIPFENHLNVLSGETGAGKSAIMHALALIAGSR-----ADSSLIR 56

Query: 67 IGSP 70
           G+ 
Sbjct: 57 NGAD 60


>gi|238750402|ref|ZP_04611903.1| DNA repair protein recN [Yersinia rohdei ATCC 43380]
 gi|238711333|gb|EEQ03550.1| DNA repair protein recN [Yersinia rohdei ATCC 43380]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 81/270 (30%), Gaps = 48/270 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAIDALGLCLGSRS-----DGSMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E           L        R    IN   V +  
Sbjct: 57  LGATRADICARFSLADTPSARQWLENNHLDDSNECLLRRAIGTDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA------IDPRHRRRMIDFER-- 164
           + EL +HL       +   +       +++ LD           +   + +      R  
Sbjct: 117 LRELGQHLIQIHGQHAHQLLLK--PDHQKQLLDAYANQSALLAEMKAAY-QVWHQSCRAL 173

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
            +  +  L                       ++   +++ +N+ +    EY ++ +  + 
Sbjct: 174 ALHQQQSLERNARH-----------------ELLQYQLKELNSFAPQAGEY-EQIDVEYK 215

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
           +LS +G L     Q+   L ++    +   
Sbjct: 216 RLSNSGQLLSLSQQALQILADDEQNNILRQ 245


>gi|269860026|ref|XP_002649736.1| DNA repair protein RAD50 [Enterocytozoon bieneusi H348]
 gi|220066795|gb|EED44266.1| DNA repair protein RAD50 [Enterocytozoon bieneusi H348]
          Length = 1180

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRN---YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++  L+I   R+   + S R+ FD   T+ VG NG GKT I+E + +L+ G
Sbjct: 3  RLISLDIKGIRSFDPHKSNRIEFDVPLTLIVGQNGTGKTTIIECLKYLTTG 53


>gi|328881466|emb|CCA54705.1| DNA repair protein RecN [Streptomyces venezuelae ATCC 10712]
          Length = 580

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 31/180 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +   +
Sbjct: 9   MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADPAL 58

Query: 65  TRIGSPSFFS-----------TFARVEGMEGLADISIKLETR----DDRSVRCLQINDVV 109
            RIG+ S                 R E      D  + L +R    + RS   L    V 
Sbjct: 59  VRIGAASAVVEGRISVPAGAPAALRAEEAGAELDDGVLLVSRTVSAEGRSRAHLGGRSVP 118

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERR----RFLDRMVFAIDPRHRRRMIDFERL 165
           + ++ EL   L           +       +R    R+    V      +         +
Sbjct: 119 VGLLAELADELVAVHGQTDQQGLLK--PARQRGALDRYAGEAVSGPLAAYAEAYRRLRAV 176


>gi|300812662|ref|ZP_07093073.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496348|gb|EFK31459.1| conserved hypothetical protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 808

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 25/221 (11%)

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--------------VEMINALS 209
           +L+  +  L  E        S+ + +MA L  +    R               E+ ++  
Sbjct: 589 KLLGQKQELEKELADKQKAVSARQQEMANLLAE--EKRYASSSQVAEDKQTLAEIADSFR 646

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM--SRRTLIG 267
               +Y+       +                  L ++Y + L  GR  + +  ++ +   
Sbjct: 647 RDSQDYLASLLAGEVIGRTLDLASNDRFPKMLKLAQDYLEILTGGRYREILLPAKLSNKT 706

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
           P +   +V    K I +A+ S G Q+ +   + LA    I +       +L+D+   + D
Sbjct: 707 PLK---VVRKDKKKIPLAYLSRGTQEQLYFALKLAFVMQIKDKIDLP--VLIDDSFVNFD 761

Query: 328 EDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNETAKFMR 366
             +   +  ++  +    QI +    + + ++++      R
Sbjct: 762 GPRTGYIVDMLKKMSEDKQILVFTAREDLAEAVSAAPIRYR 802


>gi|302307782|ref|NP_984523.2| AEL337Cp [Ashbya gossypii ATCC 10895]
 gi|299789166|gb|AAS52347.2| AEL337Cp [Ashbya gossypii ATCC 10895]
          Length = 1097

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 14/133 (10%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
            I  + ++ F  Y+           + +G NG GK+  + AI     G+     R     
Sbjct: 45  AIVSIRLTNFVTYSLAEFHMSPSLNMIIGPNGSGKSTFVCAICLGLAGKPEYIGRAKRVE 104

Query: 63  DVTRIG-SPSFFSTFARVEGMEGLAD--------ISIKLETRDDRSVRCLQINDVVIR-- 111
           D  + G + S      R                 I+++      R      IN   +   
Sbjct: 105 DFIKNGTAESTIEIQLRNSRNVSGLPMISAEDEAINVRTVLMKARRKCAYYINGEPVSEN 164

Query: 112 VVDELNKHLRISW 124
            +  L   L I  
Sbjct: 165 QMRALVSMLNIQL 177


>gi|258624530|ref|ZP_05719472.1| Predicted ATP-dependent endonuclease of the OLD family [Vibrio
          mimicus VM603]
 gi|258583183|gb|EEW07990.1| Predicted ATP-dependent endonuclease of the OLD family [Vibrio
          mimicus VM603]
          Length = 543

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ + I+ FR    L L FD   T  +G+N  GK+++L+A+S + P  G
Sbjct: 1  MYLERIEIAGFRGIRRLSLTFDE-ITTLIGENTWGKSSLLDALSVVLPADG 50


>gi|223986290|ref|ZP_03636302.1| hypothetical protein HOLDEFILI_03612 [Holdemania filiformis DSM
          12042]
 gi|223961729|gb|EEF66229.1| hypothetical protein HOLDEFILI_03612 [Holdemania filiformis DSM
          12042]
          Length = 556

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K L +  F       L FDA  ++F G+ G GK+ +++AIS L   R
Sbjct: 2  LKHLYVKNFILIDEADLDFDAGFSVFTGETGAGKSILIDAISLLCGQR 49


>gi|159030661|emb|CAO88331.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 647

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVF----DAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +++K + ++ ++ Y S  + F    D +  I  G+NG GKT+++  I +   G
Sbjct: 3  LRLKQIRLTNWKCYPSQNITFNLHPDRKIQIIFGNNGHGKTSLMTGILWCLYG 55



 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 4/121 (3%)

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           ++   D S   + +  + +           +   I P  +  I     K +     S GE
Sbjct: 493 IEWNIDNSQKMINQVTSDRYLQVTNKPEEYKGVEITPEYTLGIRTITGKLLNPDVLSAGE 552

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           ++     +  A    ++  T     L++D    HLDE+ +  +   + ++ SQ+ +  TD
Sbjct: 553 KE----ALAFAFITGLNQITDTCVPLIMDTPFGHLDEEHQKNIINSLPNLHSQVIILATD 608

Query: 352 K 352
           +
Sbjct: 609 R 609


>gi|134095819|ref|YP_001100894.1| DNA recombination and repair protein [Herminiimonas arsenicoxydans]
 gi|133739722|emb|CAL62773.1| DNA repair protein RecN (Recombination protein N) [Herminiimonas
           arsenicoxydans]
          Length = 549

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    ++ L F +  ++F G+ G GK+ +++A++    GRG      A V R
Sbjct: 2   LRTLSIRDFVIVDAIELEFSSGFSVFTGETGAGKSILIDALALALGGRG-----DASVVR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLADISIK-----LETRDDRSVR-CLQINDVV--IRVV 113
            G+        FS  A ++      + + +     L    D + R    IN +      +
Sbjct: 57  EGAAKADITAEFSASAELDAWLAENEFTNEEGGALLRRVIDNAGRSKAFINGIAATATQL 116

Query: 114 DELNKHL 120
            EL + L
Sbjct: 117 RELGEKL 123


>gi|74136137|ref|NP_001027927.1| SMC4 protein [Takifugu rubripes]
 gi|26986436|emb|CAD58915.1| SMC4 protein [Takifugu rubripes]
          Length = 1326

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  L    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 75  APRLMITHLVNRNFKSYAGEQILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 134

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 135 SKKLSVLIHSSDKHKDVESCTVEVHFQKI 163


>gi|53723607|ref|YP_103073.1| hypothetical protein BMA1418 [Burkholderia mallei ATCC 23344]
 gi|121601531|ref|YP_993228.1| hypothetical protein BMASAVP1_A1909 [Burkholderia mallei SAVP1]
 gi|124384603|ref|YP_001029327.1| hypothetical protein BMA10229_A3395 [Burkholderia mallei NCTC
          10229]
 gi|126448289|ref|YP_001080736.1| hypothetical protein BMA10247_1182 [Burkholderia mallei NCTC
          10247]
 gi|166998750|ref|ZP_02264604.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
 gi|167823769|ref|ZP_02455240.1| hypothetical protein Bpseu9_08825 [Burkholderia pseudomallei 9]
 gi|167893856|ref|ZP_02481258.1| hypothetical protein Bpse7_08871 [Burkholderia pseudomallei 7894]
 gi|226197395|ref|ZP_03792972.1| conserved hypothetical protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|238563336|ref|ZP_00439031.2| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
 gi|254177509|ref|ZP_04884164.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|254200019|ref|ZP_04906385.1| conserved hypothetical protein [Burkholderia mallei FMH]
 gi|254206353|ref|ZP_04912705.1| conserved hypothetical protein [Burkholderia mallei JHU]
 gi|254297353|ref|ZP_04964806.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|254358232|ref|ZP_04974505.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
 gi|52427030|gb|AAU47623.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
 gi|121230341|gb|ABM52859.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
 gi|124292623|gb|ABN01892.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
 gi|126241159|gb|ABO04252.1| conserved hypothetical protein [Burkholderia mallei NCTC 10247]
 gi|147749615|gb|EDK56689.1| conserved hypothetical protein [Burkholderia mallei FMH]
 gi|147753796|gb|EDK60861.1| conserved hypothetical protein [Burkholderia mallei JHU]
 gi|148027359|gb|EDK85380.1| conserved hypothetical protein [Burkholderia mallei 2002721280]
 gi|157806955|gb|EDO84125.1| conserved hypothetical protein [Burkholderia pseudomallei 406e]
 gi|160698548|gb|EDP88518.1| conserved hypothetical protein [Burkholderia mallei ATCC 10399]
 gi|225930774|gb|EEH26784.1| conserved hypothetical protein [Burkholderia pseudomallei
          Pakistan 9]
 gi|238520904|gb|EEP84360.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
 gi|243065104|gb|EES47290.1| conserved hypothetical protein [Burkholderia mallei PRL-20]
          Length = 436

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 48 LTALAIAHYRSLRELIVPL-ATLNVITGPNGSGKSSLYRALRLLA 91


>gi|312862804|ref|ZP_07723044.1| DNA repair protein RecN [Streptococcus vestibularis F0396]
 gi|322516635|ref|ZP_08069549.1| DNA repair protein RecN [Streptococcus vestibularis ATCC 49124]
 gi|311101664|gb|EFQ59867.1| DNA repair protein RecN [Streptococcus vestibularis F0396]
 gi|322124905|gb|EFX96329.1| DNA repair protein RecN [Streptococcus vestibularis ATCC 49124]
          Length = 556

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 95/278 (34%), Gaps = 35/278 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I  F     + L F+   T+  G+ G GK+ I++A++ +   R     + ++V R
Sbjct: 2   LLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGAR-----ASSEVVR 56

Query: 67  IGSP-----SFFST------FARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
             +P      FFS        + +E      +  + +     ++ R + +IN  ++ +  
Sbjct: 57  HSAPKAEIQGFFSIEQNPALVSLLEDNGIPVEDELIIRREVFQNGRSVSRINGQMVNLTT 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
             +    +  +    D+               F D+  F    +++     +  L +   
Sbjct: 117 LKSVGHFLVDIHGQHDQEELMRPALHISMLDAFGDKAFFQTKKKYQEYFDRYRELRKAVL 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINALS-----SLIMEYV 216
                     +    +  Q+AE+            +   R +++N        +     +
Sbjct: 177 EKQKNEQEHKARIEMLAFQIAEIEAASLKSGEDFALLKERDKLLNHKQIADTLTNAYVML 236

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
             E+F  +    +   D +  + + +  +E +  L + 
Sbjct: 237 DNEDFSSLSNVRSAMNDLQSLEEYDSDYKELSNNLSEA 274


>gi|307297606|ref|ZP_07577412.1| chromosome segregation protein SMC [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916866|gb|EFN47248.1| chromosome segregation protein SMC [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 1174

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 12/119 (10%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +++  + I  F+++A   R    +  T  VG NG GK+N+++AI ++   +     R  S
Sbjct: 2   LRLNSVYIKGFKSFAMPTRFEVSSGMTAVVGPNGSGKSNVVDAIRWIFGEQSMKNIRADS 61

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             DV   GS  F            E  EG+  I+ ++      S +   +ND   R+ D
Sbjct: 62  REDVIFNGSERFPPSNSAEVKLVFESEEGIFSIAREISRDGQSSYK---VNDKQSRLKD 117


>gi|262276579|ref|ZP_06054388.1| DNA repair protein RecN [Grimontia hollisae CIP 101886]
 gi|262220387|gb|EEY71703.1| DNA repair protein RecN [Grimontia hollisae CIP 101886]
          Length = 555

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 56/201 (27%), Gaps = 24/201 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I  F    +L L F    T   G+ G GK+  ++A+      R     + A + R
Sbjct: 2   LAHITIQNFAIVKALELDFQPGMTTITGETGAGKSIAIDALGLCLGDR-----ADAAMVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G                     +E  E        L     +  R    IN   +    
Sbjct: 57  PGEDKADIVVQFHLQNNPAARRWLEDNELADGDECILRRVISKEGRSRAYINGSPVPASQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
              L +HL       +   +       +   LD+               ++     RN  
Sbjct: 117 QKSLGQHLINIHGQHAHQLLMKND--YQLTLLDQYAGH-QHLLATMRQRYQDWRAARNE- 172

Query: 173 LTEGYFDSSWCSSIEAQMAEL 193
           L +   +     + + Q+ E 
Sbjct: 173 LKQLEKNKEALEA-QRQLLEY 192


>gi|256422208|ref|YP_003122861.1| hypothetical protein Cpin_3193 [Chitinophaga pinensis DSM 2588]
 gi|256037116|gb|ACU60660.1| plasmid-related protein [Chitinophaga pinensis DSM 2588]
          Length = 674

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +KI  L I  F+++     R+        F+G N  GKT+ LEA+  L  G      +  
Sbjct: 1  MKISTLTIKGFKSFGPQETRITLRKNLAAFIGLNSAGKTSALEALKRL-FGSSL---AER 56

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97
          ++ R     F     + E  + + +  + +E R D
Sbjct: 57 EIYR---EDFH--IGKDENSDEITERELSIEVRID 86


>gi|160899596|ref|YP_001565178.1| ATP-dependent endonuclease family protein [Delftia acidovorans
           SPH-1]
 gi|163858601|ref|YP_001632899.1| hypothetical protein Bpet4283 [Bordetella petrii DSM 12804]
 gi|160365180|gb|ABX36793.1| ATP-dependent endonuclease family protein [Delftia acidovorans
           SPH-1]
 gi|163262329|emb|CAP44632.1| conserved hypothetical protein [Bordetella petrii]
          Length = 600

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 66/389 (16%), Positives = 120/389 (30%), Gaps = 69/389 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
           ++I  + + +FR   S  +     H++F+GDN VGK+ +LEAI   L P R  RR    +
Sbjct: 1   MQIAKVKVEKFRGIESGIVTLS-GHSVFLGDNNVGKSTLLEAIDLVLGPERLSRRPVIDE 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ--INDVVIRVVDELNKHLR 121
                       +   EG   L  I + +        R  +  I          L     
Sbjct: 60  -----HDFHAGRYLDEEGDPVLIRIEVIVSDLSAEQQRHFRDHIEWWSATEKTLLVGPPP 114

Query: 122 ISWLVPSM---DRIFSGLSMERRR--FLDRMVFA-------IDPRHRRRMID-----FER 164
                  +    R+F     ++    F     FA         P  +          + R
Sbjct: 115 EGTDASDVSAALRVFFEGRYDKEEDDFTGNTFFATPVLAEGTHPTFKTTDKRKCGFLYLR 174

Query: 165 LMR--GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
            +R   R   L  G    S    I        +++   RV M   L + + + +   + P
Sbjct: 175 TLRTGARALSLERG----SLLDVI--------LRLQDKRVTMWEDLLNELRK-LPVADKP 221

Query: 223 HIKLS--LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
            + ++  L    D           EE   ++ D    +++ +         DL V +   
Sbjct: 222 ELGIAPLLKDVQDAVRRFVPSDWAEEPHMRVSD-LTREALRK---------DLTV-FMGT 270

Query: 281 AITIAHGS----------TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                 GS          TG    +++ + L+    +        I  ++E    L    
Sbjct: 271 GAKRPDGSTYCAPYHHQGTGTINTLVLAL-LSIIAGLKQ----NVIFAMEEPEIALPPHT 325

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
           +  +   V +  +Q   T     V +   
Sbjct: 326 QKRIVNSVRETSAQALFTSHSPYVLEEFA 354


>gi|308806069|ref|XP_003080346.1| structural maintenance of chromosomes (ISS) [Ostreococcus tauri]
 gi|116058806|emb|CAL54513.1| structural maintenance of chromosomes (ISS) [Ostreococcus tauri]
          Length = 1030

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 8/109 (7%)

Query: 13  SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFRRASYADVTR 66
             F  +++  +    +     G+NG GK+ IL A+S        S GR     S+  + +
Sbjct: 2   HNFMCHSNCEVELGPRINYITGENGSGKSAILTALSVALGAKMRSVGRSS-SKSFNGMIK 60

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
            GS     +     +G +     S       ++++     N + ++   
Sbjct: 61  SGSTQAKITVVISNDGPDAFKPESYGKAIVVEKTLNGAGANVLRLKSAR 109


>gi|146296903|ref|YP_001180674.1| DNA repair protein RecN [Caldicellulosiruptor saccharolyticus DSM
           8903]
 gi|145410479|gb|ABP67483.1| DNA replication and repair protein RecN [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 551

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 93/275 (33%), Gaps = 42/275 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I        L + FD   +I  G+ G GK+ I++++S L   +     +  ++ R
Sbjct: 2   LKRLLIENIAIIEKLEIEFDKGLSILTGETGAGKSIIIDSLSLLLGTK-----ARKEIIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRS----VRCLQINDVVIRV-------VDE 115
                   +       E   ++   +    +       R +  N   I         +  
Sbjct: 57  TNCTKALVSAVFDIEKESTLELLNSMGVVPEDGQLIVSREIYSNGKSICKVNNQFVTLSN 116

Query: 116 LNKHLRISWLVP-----SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE---RLMR 167
           L +  +  + +       +        M   RF  + V  +  ++R+   +++   ++++
Sbjct: 117 LREITKHIFEIHGQNETHLLNDKKIQLMYLDRFCGKNVEELKNQYRQLFYEYQEKSKVLK 176

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAE-------LGVKI-NIARVEMINALS------SLIM 213
               L+ +          +  Q+ E       LG  I    R +++  +S        ++
Sbjct: 177 E---LIDQEKEKDRNLDILNYQINEIESVSPRLGEDIELERRKDIVQNISKLKYNTERML 233

Query: 214 EYVQKENFPHIKLSLT-GFLDGKFDQSFCALKEEY 247
               K     I++ +     + KFD SF  + E  
Sbjct: 234 HIFNKNLIESIEVCIKLASENSKFDDSFKDIIERL 268


>gi|67478732|ref|XP_654748.1| SMC4 protein [Entamoeba histolytica HM-1:IMSS]
 gi|56471819|gb|EAL49361.1| SMC4 protein, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1226

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 2  TNRIKIKFLNISEFRNY-ASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFR 57
          T+R+ I+ +    F++Y   + L  F    T  VG NG GK+N+++ + F+     +  R
Sbjct: 7  TSRMIIEKMTFYNFKSYYDKVELGPFHESFTAIVGANGCGKSNVIDGLLFVFGRRAKQIR 66

Query: 58 RASYADVTRIGSPSFFSTFARVE 80
          +   AD+    +     T ARV+
Sbjct: 67 QQKVADLIHKSALHPNCTEARVD 89


>gi|332664049|ref|YP_004446837.1| hypothetical protein Halhy_2079 [Haliscomenobacter hydrossis DSM
           1100]
 gi|332332863|gb|AEE49964.1| hypothetical protein Halhy_2079 [Haliscomenobacter hydrossis DSM
           1100]
          Length = 370

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 55/362 (15%), Positives = 109/362 (30%), Gaps = 48/362 (13%)

Query: 22  RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD------VTRIGSPSFFST 75
            L F+    IF G NG GKT +L+ + +L  G         +      +    +      
Sbjct: 17  DLQFNEDINIFTGSNGTGKTTLLKTLWYLYSG--HFNQLVKEIYFKEAIITAKNDRKLVI 74

Query: 76  ---FARVEGMEGLADISIKLETRDDRSVR-------CLQINDVVIRVVDELNKHLRISWL 125
                 V+  + +   ++      D   +        ++  +      + +   +  S  
Sbjct: 75  RRNEIVVQNEDVVPSKTLITMALIDNKGKTYLSFESTIKGKEPEENPDNAIEGAVDGSIF 134

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
            P+            RR                + DF   M                   
Sbjct: 135 FPTF-----------RRLEGGFSLQESSDLINALRDFTSQMTKDQHRFISSSDSQDIRGL 183

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           I    +++ +K+  A  + +N L+  +   V     PH    L   ++ K      A  +
Sbjct: 184 INEISSDIRIKMESANADFMNFLTKNVKGSVS----PHFTEELKKKIEQKEKAETEA--K 237

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E    L          +   I     DL +      I++ + S GE K  L  +  A   
Sbjct: 238 EPITNLSKYIDQYFWEKSIKIT---DDLKLGRNTNEISVENLSAGE-KNFLSFLVYA--- 290

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAK 363
               ++    I+ +DE   +L  D +  L   +  I    Q F+     +++ S  + + 
Sbjct: 291 ----SSLKKGIIFIDEPELNLHIDWQRLLLSTLHHISPKVQFFVATHSPAIYASYPDKSF 346

Query: 364 FM 365
           + 
Sbjct: 347 WF 348


>gi|313665382|ref|YP_004047253.1| chromosome segregation protein SMC [Mycoplasma leachii PG50]
 gi|312949476|gb|ADR24072.1| chromosome segregation protein SMC [Mycoplasma leachii PG50]
          Length = 988

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 81/238 (34%), Gaps = 42/238 (17%)

Query: 7   IKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K +  S F+++A L +  F+   T  VG NG GK+NI +AI +       +  R +   
Sbjct: 4   LKQIRASGFKSFADLTVMDFNYDMTGVVGPNGSGKSNITDAIRWTLGEQSTKTLRGSKMD 63

Query: 63  DVTRIGSPS------FFSTFARVEGMEGLADIS---IKLETRDDRSVR--CLQINDVVIR 111
           D+   G+           T       E  + I    +++  + D++ R     IN    +
Sbjct: 64  DIVFSGNNEKKAADVAEVTLVFNNTHENFSSIKSDIVEITRKFDKNTRESEFYINSNKCK 123

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDF 162
           + D  +  L    L  S   I S              +R   D             +  +
Sbjct: 124 LKDVQSIALEA-GLTRSSIAIISQGTVANFTESKPETKREIFDD---------AAGVSKY 173

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           ++  R +  LL       +     +        K    R+  +   S   +EY QK N
Sbjct: 174 KK--RKKETLLKLEKATENLTRLEDI------AKEISRRLPNLERQSKKALEYQQKVN 223


>gi|241664249|ref|YP_002982609.1| hypothetical protein Rpic12D_2666 [Ralstonia pickettii 12D]
 gi|240866276|gb|ACS63937.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 118/349 (33%), Gaps = 59/349 (16%)

Query: 29  HTIFVGDNGVGKTNILEAIS-FLSPG--RGFRRAS-YADVTRIGSPSFFSTFARV-EGME 83
             + VG N  GKT +++A+   LS G     R +S    VT  G+ S  +TF+ V  G+ 
Sbjct: 4   LNVLVGPNNAGKTAVVDALRVLLSAGDEGALRVSSYDLHVTDAGAQSAQATFSYVFAGLS 63

Query: 84  GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRF 143
              +       +   + +             E   HL + +  P      SG    RR  
Sbjct: 64  KSEEADFLTALKPTTNAKGE----------TEYEAHLTVRYSNPDD----SGRLRVRRWC 109

Query: 144 LDRMVFAIDPRHRRRMID-FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKIN--IA 200
            D     I       +   +   +R   + L               Q+A L  +++   +
Sbjct: 110 GDHEDNPIASEMLEDLRAVYLPPLRDPAQGLRPSRSS---------QLARLVQRLSDDAS 160

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR-KMDS 259
           R E++  L+ L  E   K+     + ++T        +    L +  ++KL  G    D 
Sbjct: 161 RQEVVETLTKLDTELRAKKPITDTQAAIT-------KRHTDMLGKVLSQKLAVGLSPSDF 213

Query: 260 MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLL 319
                 +    +D  V+                 ++ + + L+   L          L++
Sbjct: 214 QRVAARLALAVADFDVEQNGLGFNN---------LIYMAVVLSELSLNKEA--AYRALIV 262

Query: 320 DEISAHLDEDKRNALFRIVTDIGS--------QIFMTGTDKSVFDSLNE 360
           +E  AHL    +  L + +  + +        Q+F+T      F +L +
Sbjct: 263 EEPEAHLHPQLQAVLLQYLKSVETPAVNENPVQVFVTS-HSPNFAALAD 310


>gi|255657907|ref|ZP_05403316.1| putative ABC transporter ATP-binding protein [Mitsuokella multacida
           DSM 20544]
 gi|260850099|gb|EEX70106.1| putative ABC transporter ATP-binding protein [Mitsuokella multacida
           DSM 20544]
          Length = 673

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 16/113 (14%)

Query: 7   IKFLNISEFRNYA-SLRLVF----DAQHTIFVGDNGVGKTNILEA-ISFLSPGRGFRRAS 60
           IK + +  FR +     L F        T+ +G+NG GKT + +A +  L     FR   
Sbjct: 6   IKSMTLENFRQFKGESTLDFATDSHKNVTVIMGENGAGKTTLEQAFMWCLYGTNTFR--- 62

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD--RSVRCLQINDVVIR 111
             ++              + G E    +++ +       + VR  ++    +R
Sbjct: 63  LKELINRE-----VRDTMISGDEERVSVTLMISHNQKNYKIVRKQRLKKQGVR 110


>gi|153854766|ref|ZP_01996000.1| hypothetical protein DORLON_01998 [Dorea longicatena DSM 13814]
 gi|149752673|gb|EDM62604.1| hypothetical protein DORLON_01998 [Dorea longicatena DSM 13814]
          Length = 522

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 67/201 (33%), Gaps = 21/201 (10%)

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            ++ +  E         ++  Q+AEL      +R   +   +  +     ++    ++  
Sbjct: 337 EKSHITAELKEKRIQYDNLGEQLAELDEVNERSREYEMKRQAVQMAADHLEQLSEEMRGY 396

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           L   L+ K     C +     KKL    K+               + +   +K + I   
Sbjct: 397 LKRDLNEKASSFICEITGGKYKKLVTDEKL--------------HVSLMTDEKRVEIEQV 442

Query: 288 STG--EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
           S G  EQ  V + + +A   L+         ++LD+  A+ DE++     R + +   Q+
Sbjct: 443 SRGTVEQ--VYLALRMAVGELLCE---EEMPVILDDAFAYYDEERMLQTLRWLKEHKKQV 497

Query: 346 FMTGTDKSVFDSLNETAKFMR 366
            +          + E      
Sbjct: 498 IIFTCQTREEQVMKEAGLVYH 518



 Score = 41.4 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          ++I  L +  F  +   ++  D    +  G+N  GK+ I
Sbjct: 1  MQINELLLKNFGKFHDRQIDLDEGINLIHGENESGKSTI 39


>gi|149174927|ref|ZP_01853551.1| hypothetical protein PM8797T_11144 [Planctomyces maris DSM 8797]
 gi|148846264|gb|EDL60603.1| hypothetical protein PM8797T_11144 [Planctomyces maris DSM 8797]
          Length = 1277

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 100/296 (33%), Gaps = 55/296 (18%)

Query: 7   IKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--------- 53
           +  L    FR        +   FD +  +  G NG GKT++L A+ ++  G         
Sbjct: 101 LADLTCKSFRGIAPAGEKVHFSFDTKSNLIYGPNGSGKTSLLGAVIWVLTGSAISDANDT 160

Query: 54  -----------RGFRRASYAD-----------VTRIGSPSFFSTFARVEGMEGLADISIK 91
                       G + +   D           +T+      F+   ++   +   ++ ++
Sbjct: 161 SETAPVHAISNSGSKGSKITDWPVVATLPEGNITKTTEQECFA-QVKLISQDRQHELHLR 219

Query: 92  LETRDDRSVRCLQINDVVIRVVDELNKH---LRISWLVPSMDRIFS-GLSMERRRFLDRM 147
               +       + +      +++   H   L++S L P++   FS   + + +  L  M
Sbjct: 220 RSISNGLEHSSDETDWKNCSNLEQFGIHSLDLQLSLLAPTVFGRFSVEDAPDTKSLLSLM 279

Query: 148 VFAIDPRHRRRMIDFERLMRGRNRLLTE--GYFDSSWCSSIEAQMAELGVK--INIARVE 203
           +   D      +    ++ R R  L+T+     D  W S +  ++  +  K  ++   +E
Sbjct: 280 LGYDDLIILGDLA--SKIARNRTSLVTKETNSIDKEW-SELTEKLQAISEKPLVSENILE 336

Query: 204 MINALSSLIMEYVQKE--------NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
           +I  L       + +         N      S    L G   +     K +YA+ L
Sbjct: 337 IIKPLRIKSEATLDQIDTVGKQLSNLVKDSQSYLANLLGLSHEEESENKIDYAEIL 392


>gi|116250856|ref|YP_766694.1| structural maintenance of chromosomes protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255504|emb|CAK06581.1| putative structural maintenance of chromosomes protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1153

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFNKLRLVGFKSFVEPTEFIIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  E  A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVALYLDNAERTAPAAFNDSDEIQVTRRIEREQGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR+ L+
Sbjct: 121 ESRAKDVQLLFADASTGARSPSMVGQGRIGELIQAKPQARRQLLE 165


>gi|66770388|ref|YP_245150.1| hypothetical protein XC_4091 [Xanthomonas campestris pv.
          campestris str. 8004]
 gi|66575720|gb|AAY51130.1| conserved hypothetical protein [Xanthomonas campestris pv.
          campestris str. 8004]
          Length = 472

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  L ++ F+N     + F        G NGVGK+NI ++I FLS  
Sbjct: 2  LTRLEVNCFKNLLGFSVNFGP-FNCVAGLNGVGKSNIFDSIKFLSLL 47


>gi|19115819|ref|NP_594907.1| Smc5-6 complex SMC subunit Smc5 [Schizosaccharomyces pombe 972h-]
 gi|8489009|sp|O13710|SMC5_SCHPO RecName: Full=Structural maintenance of chromosomes protein 5;
           AltName: Full=DNA repair protein spr18; AltName:
           Full=SMC partner of rad18
 gi|3861449|emb|CAB11195.1| Smc5-6 complex SMC subunit Smc5 [Schizosaccharomyces pombe]
 gi|7649692|emb|CAB89122.1| Spr18 protein [Schizosaccharomyces pombe]
          Length = 1065

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/215 (18%), Positives = 68/215 (31%), Gaps = 25/215 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           I  + +  F  Y    L       + +G NG GK+ I+ AI     G       R     
Sbjct: 13  IVRIKLVNFVTYDYCELFPGPYLNLIIGPNGTGKSTIVSAICI-GLGWPPKLLGRAKEAR 71

Query: 63  DVTRIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVD--ELNKH 119
           +  + G     +    +E      + ++I  +   D+S     IN           L   
Sbjct: 72  EFIKYGKN---TATIEIEMKYRDDETVTITRQISQDKSS-SFSINREACATSSITSLMDT 127

Query: 120 LRISW-----LVPSMD--RIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRN 170
             +        +P              R    +R +    + P H  ++ID  +  R R 
Sbjct: 128 FNVQLNNLCHFLPQDRVAEFAQLDPYSRLMETERAIDHEGLLPAH-EKLIDLRK--RERE 184

Query: 171 RLLTEGYFDSSWCSSIEAQMA-ELGVKINIARVEM 204
            L  +    S+  S  + Q A E  V I   R ++
Sbjct: 185 ILQNKNQGQSTLNSLKDRQQALEKEVNIFKEREKI 219


>gi|332161830|ref|YP_004298407.1| hypothetical protein YE105_C2208 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
 gi|318605670|emb|CBY27168.1| putative ATPase [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325666060|gb|ADZ42704.1| hypothetical protein YE105_C2208 [Yersinia enterocolitica subsp.
          palearctica 105.5R(r)]
          Length = 392

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  L IS +R+   + L    Q  +  G NG GK+++  A+  LS
Sbjct: 2  ITRLAISGYRSLRDVVLELG-QLNVITGANGSGKSSLYRALRLLS 45


>gi|295695412|ref|YP_003588650.1| DNA repair protein RecN [Bacillus tusciae DSM 2912]
 gi|295411014|gb|ADG05506.1| DNA repair protein RecN [Bacillus tusciae DSM 2912]
          Length = 569

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 80/211 (37%), Gaps = 36/211 (17%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            L++  F       L F+    +  G+ G GK+ +L+A+  +   RG R +  A   R G
Sbjct: 2   SLSVRNFLLIDEAHLEFETGFHVLTGETGAGKSILLDALGLI---RGERAS--AQQVRAG 56

Query: 69  S-----PSFFSTFARVEGMEGLADISIK------LETRDDRSVRCL-QIND--VVIRVVD 114
           +      + FST  R E +  L ++  +      L     R  + + +IN   V ++++ 
Sbjct: 57  AKQAVVEALFSTDGRPEALRWLEEMGFEPAEEILLVREVGRQGKSVCRINGRTVTVQMLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           +L   L   +       +         R LD      D  H+  + ++ R          
Sbjct: 117 DLAARLIDVYGQHEHQSLLQ--PDRYARMLD---GYGDASHQTLLEEYRRA--------- 162

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMI 205
               D    +  + + A+LG +  + R++ +
Sbjct: 163 ---HDLFTRADADLRAAQLGEEERLQRIDWL 190


>gi|238762642|ref|ZP_04623612.1| hypothetical protein ykris0001_43050 [Yersinia kristensenii ATCC
          33638]
 gi|238699287|gb|EEP92034.1| hypothetical protein ykris0001_43050 [Yersinia kristensenii ATCC
          33638]
          Length = 392

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  L IS +R+   + L    Q  +  G NG GK+++  A+  LS
Sbjct: 2  ITRLAISGYRSLRDVVLELG-QLNVITGANGSGKSSLYRALRLLS 45


>gi|224048768|ref|XP_002196915.1| PREDICTED: structural maintenance of chromosomes 6 [Taeniopygia
           guttata]
          Length = 1095

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  +++L    F +     +G NG GK+++L A+     G+     R +S  
Sbjct: 56  IESIQLKNFMCHSNLGPFQFGSNLNFVIGTNGSGKSSVLTALIVGLGGKATATNRGSSLK 115

Query: 63  DVTRIGSPSF-FSTFARVEGME 83
              + G  S   S   R +G +
Sbjct: 116 MFIQKGETSADISITLRNQGRD 137


>gi|332976415|gb|EGK13264.1| ATP-binding nuclease [Psychrobacter sp. 1501(2011)]
          Length = 674

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          ++I  L I  F+++    + +    + + F+G N  GKT  LEA+  L  G      S  
Sbjct: 9  MQISNLRIKGFKSFGPDGVDINLKHKLSAFIGLNSSGKTTALEALRKL-FGSSL---SER 64

Query: 63 DVTRIG 68
           + R  
Sbjct: 65 MLVRED 70


>gi|330895386|gb|EGH27724.1| hypothetical protein PSYJA_01284 [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 564

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KIK + +  ++   ++ L F    T   G N  GKT++++A+
Sbjct: 1  MKIKSIVVKNYKTLENVPLTFGDTFTSISGRNNAGKTSVIKAL 43


>gi|314933693|ref|ZP_07841058.1| DNA repair protein RecN [Staphylococcus caprae C87]
 gi|313653843|gb|EFS17600.1| DNA repair protein RecN [Staphylococcus caprae C87]
          Length = 558

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 95/282 (33%), Gaps = 40/282 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2   LQTLSIKQFAIIDKLEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--YVR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKL-------ETRDDRSVRCL-QINDVVIRVV 113
            G         F      + +  L D+SI +       +     S + + +IN+ ++ + 
Sbjct: 57  HGEKKAIIEGIFDIDESKDAISILEDLSIDIDEDFLLVKREIFSSGKSICRINNQIVTLQ 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG----R 169
           D       +  +    +           + LD      + ++   +  ++ +       R
Sbjct: 117 DLRKVMQELLDIHGQHETQSLLKQKYHLQLLDD---YAENQYSDLLQQYKNVFNQYKDKR 173

Query: 170 NRLLTEGYFDSSWCSSIE------AQMAELG--------VKINIARVEMINALSSLIMEY 215
             L      D +    ++       ++ E          ++++I R++    LS  +   
Sbjct: 174 KELEDLESADQALLQRLDLMKFQFEELTEASLKEDEVEQLEVDIKRIQNSEKLSLALNNA 233

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            Q     +        L     QS   +  E  +KL +    
Sbjct: 234 HQVLTDENAIPDRLYELSNHL-QSINDIVPEKYEKLKEDIDQ 274


>gi|261381103|ref|ZP_05985676.1| conserved hypothetical protein [Neisseria subflava NJ9703]
 gi|284795901|gb|EFC51248.1| conserved hypothetical protein [Neisseria subflava NJ9703]
          Length = 478

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 10/59 (16%)

Query: 5  IKIKFLNISEFRNY--ASLRLVF--------DAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + IK + +S F+ +   + ++ F         +   IFVG+N  GK++I EA+ FL  G
Sbjct: 1  MFIKSICLSNFKGFIGENHQINFKIPDGTTPGSGLNIFVGENNSGKSSIFEAVDFLRNG 59


>gi|168185970|ref|ZP_02620605.1| putative RecF/RecN/SMC N domain [Clostridium botulinum C str.
           Eklund]
 gi|169296094|gb|EDS78227.1| putative RecF/RecN/SMC N domain [Clostridium botulinum C str.
           Eklund]
          Length = 761

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 6/111 (5%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I +K L +  F+    L + F  + T   G NG GK+ I +A  +L   +      
Sbjct: 1   MGKNIFLKKLALRNFKGIKDLTVDFS-KVTNIYGGNGTGKSTIADAFMWLLFDK-----D 54

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
             D +     +       + G+E      + ++ +D    +  +      R
Sbjct: 55  SQDRSAFEIKTLDKDSNVIHGLEHEVTGVLSIDGKDITLSKIYKEKWTKRR 105


>gi|153869449|ref|ZP_01999044.1| ATPase [Beggiatoa sp. PS]
 gi|152074060|gb|EDN70959.1| ATPase [Beggiatoa sp. PS]
          Length = 471

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 112/349 (32%), Gaps = 30/349 (8%)

Query: 20  SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-RGFRRASYADVT-RIGSPSFFSTFA 77
            +  + D +  I +G NG GKT +L  I     G + F    +  +  +  S    +  A
Sbjct: 123 DINWILDPKVNILIGKNGTGKTTLLHLIEAAIGGVKNFNETEFKSIQLKFNSNKHITVRA 182

Query: 78  RVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNKHLRISWLVPSMDRIFSG 135
            ++     A+   +      +  R   +      +   D+      +         + S 
Sbjct: 183 -IDPSSFFAEEFSEEPKTLKKKERFDLLKQFLSAVAKNDKFGGAYSV------DTNLISK 235

Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG-RNRLLTEGYFDSSWCSSIEAQMAE-- 192
              E+          I       +  FE  +   +           +    I A + E  
Sbjct: 236 --QEKENMDSMDFSHIIN--LATISTFELSLSALKPTQDKRNSQIKTELDIILADLIERF 291

Query: 193 --LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
               +K+         +L   I E   KE     +L     L    DQ    + ++    
Sbjct: 292 KGYQLKLRNWEKNETASLDQKIKELSAKETAEKAELEELRRLIADKDQKITEIYQQKNDF 351

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIV--DYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           +     + S +R+TL     + LI       K I+    S+GE++V+++ +      ++ 
Sbjct: 352 INQVNTLFSDARKTLDFDENNALIFQKSQNQKLISPYQLSSGEKQVLIILL----TTILQ 407

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVF 355
                  I+L+DE    L    +  +  ++  +    Q+ +      +F
Sbjct: 408 E--NKPSIILMDEPEISLHLSWQLYIIDVIQKLNPNCQLIIVTHSPGIF 454


>gi|94988852|ref|YP_596953.1| DNA repair protein [Streptococcus pyogenes MGAS9429]
 gi|94992743|ref|YP_600842.1| DNA repair protein recN [Streptococcus pyogenes MGAS2096]
 gi|94542360|gb|ABF32409.1| DNA repair protein [Streptococcus pyogenes MGAS9429]
 gi|94546251|gb|ABF36298.1| DNA repair protein recN [Streptococcus pyogenes MGAS2096]
          Length = 567

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 34/234 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 16  LLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTEVIR 70

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----TRDD---RSVRCLQINDVVIRVV- 113
            G+       FFS  A  E +  L    I +E     R D         +IN  ++ +  
Sbjct: 71  RGANKAEIEGFFSVDATPELVACLESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLAT 130

Query: 114 ---------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                    D   +H +   + P + +           F D+    +   ++     ++ 
Sbjct: 131 LKQVGQFLVDIHGQHDQEELMRPQLHQQILDA------FGDKAFEQLKENYQLIFDRYKS 184

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQ 217
           L R                  +  Q+AE+    ++    + +N     +M + Q
Sbjct: 185 LRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQ 238


>gi|254252190|ref|ZP_04945508.1| hypothetical protein BDAG_01406 [Burkholderia dolosa AUO158]
 gi|124894799|gb|EAY68679.1| hypothetical protein BDAG_01406 [Burkholderia dolosa AUO158]
          Length = 393

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +K L ++ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 5  ALKTLAVANYRSLRELIVPLAA-LNVVTGPNGSGKSSVYRALRLLA 49


>gi|319949191|ref|ZP_08023280.1| recombination and DNA repair protein [Dietzia cinnamea P4]
 gi|319437177|gb|EFV92208.1| recombination and DNA repair protein [Dietzia cinnamea P4]
          Length = 586

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 83/286 (29%), Gaps = 52/286 (18%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----F 56
           M   ++I  L + +          F    ++  G+ G GKT ++  +  L+ GR      
Sbjct: 1   MLTELRISGLGVID-----EAVADFSPGLSVLTGETGAGKTMVVTGLRLLAGGRADPGRV 55

Query: 57  RRASYADVT--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           RR +   V   R    +  +                 ++  +D SV   +      R   
Sbjct: 56  RRGADKAVVEGRFDLSATATMDPADRRDLDDLLEDADVDLDEDGSVIAARRVGADGRSRA 115

Query: 115 ELNKHL-----------RISWLVPSMDRIFSGLSMERRRFLD-------RMVFAIDPRHR 156
            L                +  +    D++       +R  +D       R          
Sbjct: 116 RLGGRSVPAGTLARFCAPVLAVHGQNDQLRLLRPDRQRDAVDAHGGDDARAALEAYRETY 175

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWC-------SSIEAQ---MAELGVKINIARVEMIN 206
           RR  + ER +  R     E   ++           +++ Q    AEL   I   R+    
Sbjct: 176 RRWREAERSLAERTGRARELAREADLLRMGLEEIDALDPQPGEEAELDALI--RRLTDSE 233

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
            L  +  +  +               DG+  +    L ++  ++L 
Sbjct: 234 ELREVAGQAHEALTG-----------DGETTEPMVGLLDQLRQRLA 268


>gi|194366359|ref|YP_002028969.1| chromosome segregation protein SMC [Stenotrophomonas maltophilia
           R551-3]
 gi|194349163|gb|ACF52286.1| chromosome segregation protein SMC [Stenotrophomonas maltophilia
           R551-3]
          Length = 1167

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGVVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-----------INDV 108
             DV   GS +    + A VE +   +D +I  E      +   +           +N  
Sbjct: 61  LTDVIFSGSNARKPVSQATVELIFDNSDHTISGEYASFNEISVKRTVSRDGTSNYYLNGT 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 KCRRRD 126


>gi|114771763|ref|ZP_01449156.1| DNA repair protein RecN [alpha proteobacterium HTCC2255]
 gi|114547579|gb|EAU50470.1| DNA repair protein RecN [alpha proteobacterium HTCC2255]
          Length = 545

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 63/181 (34%), Gaps = 32/181 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + I  L + +      L L F     +  G+ G GK+ +L+++ F+   RG R + 
Sbjct: 1   MLRGLYITDLLLID-----KLELNFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-RSS- 53

Query: 61  YADVTRIGSPSFFST-FARVEGMEGLADI----------------SIKLETRDDRSVRCL 103
              + R G+ +     +  ++    + +I                ++ LE R    V   
Sbjct: 54  ---LVREGANNGEVIAYFDIKNSVSVKEILKSSGIPATDELILRRTVNLEGRKTSYVNDK 110

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + +  ++R + ++   +   +       + +         LD        + R    ++ 
Sbjct: 111 RCSGEILRKLSDVLVEIHGQF---DDRGLLN--PKSHIDLLDNFGNINSFKLRLLWKEYR 165

Query: 164 R 164
           +
Sbjct: 166 K 166


>gi|21233424|ref|NP_639341.1| hypothetical protein XCC4002 [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|188993590|ref|YP_001905600.1| hypothetical protein xccb100_4195 [Xanthomonas campestris pv.
          campestris str. B100]
 gi|21115266|gb|AAM43223.1| conserved hypothetical protein [Xanthomonas campestris pv.
          campestris str. ATCC 33913]
 gi|167735350|emb|CAP53564.1| conserved hypothetical protein [Xanthomonas campestris pv.
          campestris]
          Length = 472

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  L ++ F+N     + F        G NGVGK+NI ++I FLS  
Sbjct: 2  LTRLEVNCFKNLLGFSVNFGP-FNCVAGLNGVGKSNIFDSIKFLSLL 47


>gi|56963962|ref|YP_175693.1| hypothetical protein ABC2197 [Bacillus clausii KSM-K16]
 gi|56910205|dbj|BAD64732.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 478

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 5  IKIKFL---NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
          +K+  +    +  F+++    L FD    + VG +  GKT IL A+ +      F +   
Sbjct: 1  MKLNNIVSVRLENFQSHLDSTLQFDKGLNVIVGQSDSGKTAILRAVRWAL----FNQPRG 56

Query: 62 ADVTRIGSP 70
           D  R+G+ 
Sbjct: 57 TDFIRVGAD 65


>gi|42693|emb|CAA68435.1| unnamed protein product [Escherichia coli K-12]
          Length = 567

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 81/249 (32%), Gaps = 41/249 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  +       ++          + +  D       ++     R    +N         
Sbjct: 57  TGCRADLCARFSLKDTPARLRWLEENQLEDGHECLLRRVISSDGRSRGFING-------- 108

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
                  + + + + R L +++  I  +H               +LLT+           
Sbjct: 109 -------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKPEHQKFLLDGY 148

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------SF 240
             + + L  +   AR ++ +     +  + Q       +  L  +   + ++       F
Sbjct: 149 ANETSLL--QEMTARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEF 206

Query: 241 CALKEEYAK 249
             + EEY +
Sbjct: 207 EQIDEEYKR 215


>gi|223932929|ref|ZP_03624924.1| DNA repair protein RecN [Streptococcus suis 89/1591]
 gi|223898375|gb|EEF64741.1| DNA repair protein RecN [Streptococcus suis 89/1591]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 103/279 (36%), Gaps = 43/279 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   TI  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2   LLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGAR-----ATTDVIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
            G+                       +G+E   ++ I+ E  ++ RSV  +    V + V
Sbjct: 57  HGAAKAEIEGLFSFENSRALEQILLEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFE----RLM 166
           + ++ ++L         + +       R    F +   +++  R++     +     R++
Sbjct: 117 LKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDKFWSLKDRYQTTFDAYRSLRKRVL 176

Query: 167 -RGRNRLLTEGYFDSSWCSSIEAQMAEL----GVKINIARVEMINALS-----SLIMEYV 216
            + +N    +   +       E + A+L     +++N  R +++N        +     +
Sbjct: 177 EKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALL 236

Query: 217 QKENFPHI--------KLSLTGFLDGKFDQSFCALKEEY 247
             E+F  +         L      D  + Q   +L E Y
Sbjct: 237 DNEDFSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAY 275


>gi|312864596|ref|ZP_07724827.1| DNA repair protein RecN [Streptococcus downei F0415]
 gi|311099723|gb|EFQ57936.1| DNA repair protein RecN [Streptococcus downei F0415]
          Length = 551

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 97/279 (34%), Gaps = 43/279 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIEEISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTEVIR 56

Query: 67  IGSP-----SFFST--------FARVEGMEGLADISIKLET-RDDRSVRCLQINDVVIRV 112
             +P      FF+              G++   ++ I+ E  ++ RSV  +    V +  
Sbjct: 57  HAAPKAEIQGFFTVEESPALSQVMEEHGIDFSDELIIRREIFQNGRSVSRINGQMVNLST 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           +  + ++L         + +       +    F D    A    ++     +  L +   
Sbjct: 117 LRSVGQYLVDIHGQHDQEELMKAPQHIKLLDEFGDENFQASKRAYQTSFEAYRTLRKRVL 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINALS-----SLIMEYV 216
                     +    +E Q+AE+           K+N  R +++N  +     +     +
Sbjct: 177 DKQKNEQEHKARIEMLEFQLAEIEAADLKPGEDDKLNQERDKLLNHKNIADTLTNAYAML 236

Query: 217 QKENFPHI--------KLSLTGFLDGKFDQSFCALKEEY 247
             E+F  +         L      D  + +   +L E Y
Sbjct: 237 DNEDFSSLTNVRSAMNDLQTIEDFDSDYKEVSSSLAESY 275


>gi|307247129|ref|ZP_07529181.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
 gi|306856378|gb|EFM88529.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 2 str. S1536]
          Length = 542

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ + IS FR    L L       + +G+N  GK+++L+A+S +
Sbjct: 1  MYLQQIEISGFRGINHLSLTLRPNM-VLIGENAWGKSSLLDALSHI 45


>gi|297157214|gb|ADI06926.1| SMC domain protein [Streptomyces bingchenggensis BCW-1]
          Length = 404

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          I  + +  +++ A   +    + T+ +G N  GK+N L+A+ F
Sbjct: 4  ITRVQVDNYKSIAHCDVTLG-RFTVLLGLNAAGKSNFLDALRF 45


>gi|190341549|gb|ACE74851.1| RecN [Enterobacter pulveris]
 gi|190341553|gb|ACE74853.1| RecN [Enterobacter pulveris]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 86/256 (33%), Gaps = 38/256 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  QGASRADLCARFSLKDTPAALRWLEENQLEDGSECLLRRAISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       ++  LD         +       E  +  +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLLK--PEHQKTLLD--------GYAG-----ETALTQQMSA 161

Query: 173 LTEGYFDSSWCSSIEAQMAE---LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
               +  S    ++  Q+++      ++   +++ +N  +    E+ ++ +  + +L+ +
Sbjct: 162 AYRQWHQSCRDLALHQQLSQERAARAELLHYQLKELNDFNPQAGEF-EQIDEEYKRLANS 220

Query: 230 GFLDGKFDQSFCALKE 245
           G L     Q+   L +
Sbjct: 221 GQLLSTSQQALHLLAD 236


>gi|190341547|gb|ACE74850.1| RecN [Enterobacter pulveris]
 gi|190341551|gb|ACE74852.1| RecN [Enterobacter pulveris]
 gi|190341555|gb|ACE74854.1| RecN [Enterobacter pulveris]
 gi|190341557|gb|ACE74855.1| RecN [Enterobacter pulveris]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 86/256 (33%), Gaps = 38/256 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  QGASRADLCARFSLKDTPAALRWLEENQLEDGSECLLRRAISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       ++  LD         +       E  +  +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLLK--PEHQKTLLD--------GYAG-----ETALTQQMSA 161

Query: 173 LTEGYFDSSWCSSIEAQMAE---LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
               +  S    ++  Q+++      ++   +++ +N  +    E+ ++ +  + +L+ +
Sbjct: 162 AYRQWHQSCRDLALHQQLSQERAARAELLHYQLKELNDFNPQAGEF-EQIDEEYKRLANS 220

Query: 230 GFLDGKFDQSFCALKE 245
           G L     Q+   L +
Sbjct: 221 GQLLSTSQQALHLLAD 236


>gi|254179472|ref|ZP_04886071.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
 gi|184210012|gb|EDU07055.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
          Length = 444

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 56 LTALAIAHYRSLRELIVPL-ATLNVITGPNGSGKSSLYRALRLLA 99


>gi|167910546|ref|ZP_02497637.1| hypothetical protein Bpse112_08630 [Burkholderia pseudomallei
          112]
          Length = 436

 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 48 LTALAIAHYRSLRELIVPL-ATLNVITGPNGSGKSSLYRALRLLA 91


>gi|301166106|emb|CBW25681.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 574

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEA 46
          ++K L I  FR+     +  D     + +G N VGK++IL A
Sbjct: 10 RLKNLKIKNFRSIGKTEVSIDLDDIVVLIGPNNVGKSSILNA 51


>gi|166030422|ref|ZP_02233251.1| hypothetical protein DORFOR_00083 [Dorea formicigenerans ATCC
           27755]
 gi|166029780|gb|EDR48537.1| hypothetical protein DORFOR_00083 [Dorea formicigenerans ATCC
           27755]
          Length = 558

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 21/121 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L + +      + + F     I  G+ G GK+ IL +++    GR      
Sbjct: 1   MLQSLHVKNLALID-----EIEVEFAEGLNILTGETGAGKSIILGSVNLALGGR-----Y 50

Query: 61  YADVTRIGSPSFFSTFA-------RVEGMEGL----ADISIKLETRDDRSVRCLQINDVV 109
             D+ R G                R++ +E L     D  + L  +        +IN   
Sbjct: 51  TKDLIRQGENYALVELVFTVTEKSRLKALEKLCIYPEDGLLILSRKLMDGRSVSRINGET 110

Query: 110 I 110
           +
Sbjct: 111 V 111


>gi|162451507|ref|YP_001613874.1| hypothetical protein sce3235 [Sorangium cellulosum 'So ce 56']
 gi|161162089|emb|CAN93394.1| hypothetical protein sce3235 [Sorangium cellulosum 'So ce 56']
          Length = 411

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLS 51
          ++ + I  FR    + +        + +G+N  GK+ IL+ ++ + 
Sbjct: 2  LEKIRIQGFRALKDVEISLPPGKPLVLIGENASGKSTILDGVAMIC 47


>gi|163941196|ref|YP_001646080.1| hypothetical protein BcerKBAB4_3277 [Bacillus weihenstephanensis
          KBAB4]
 gi|163863393|gb|ABY44452.1| conserved hypothetical protein [Bacillus weihenstephanensis
          KBAB4]
          Length = 728

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 24/42 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
          +KIK + +S +R   ++    +   ++ +G N  GKT++L A
Sbjct: 1  MKIKKIKVSNYRLLKNMIFDMEENLSLIIGKNNCGKTSLLSA 42


>gi|313205117|ref|YP_004043774.1| hypothetical protein Palpr_2659 [Paludibacter propionicigenes
          WB4]
 gi|312444433|gb|ADQ80789.1| hypothetical protein Palpr_2659 [Paludibacter propionicigenes
          WB4]
          Length = 568

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFR 57
          + IK +    +R   ++ + F   +T   G N  GK+NI+ AI   L+ G  FR
Sbjct: 1  MIIKRITAKNYRTLENIEVEFKGFYTAISGRNNAGKSNIIRAIRGILNQGIRFR 54


>gi|290510931|ref|ZP_06550300.1| DNA repair protein RecN [Klebsiella sp. 1_1_55]
 gi|289775924|gb|EFD83923.1| DNA repair protein RecN [Klebsiella sp. 1_1_55]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 30/195 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E   +  ++     D   R   IN   V + 
Sbjct: 57  RGATRADLCARFALKDTPAAQRWLEENQLESGRECLLRRVISADGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFER-- 164
            + EL + L       +   +       ++  LD       +      H R+     R  
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLTK--PEHQKTLLDGYTGEYALTQRMAEHYRQWHQSCREL 173

Query: 165 LMRGRNRLLTEGYFD 179
            +  +         D
Sbjct: 174 ALHQQQSQERAARAD 188


>gi|218700808|ref|YP_002408437.1| SMC domain-containing protein (fragment) [Escherichia coli IAI39]
 gi|218370794|emb|CAR18607.1| SMC domain protein (fragment) [Escherichia coli IAI39]
          Length = 189

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAI 47
          + I+ L ++    +  L +            T+F+G+NG GKT+IL+++
Sbjct: 2  MNIRTLKLTNLGRFEELDVHLAPVEEFKSNVTVFIGNNGAGKTSILKSL 50


>gi|206579944|ref|YP_002237046.1| DNA repair protein RecN [Klebsiella pneumoniae 342]
 gi|206569002|gb|ACI10778.1| DNA repair protein RecN [Klebsiella pneumoniae 342]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 30/195 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E   +  ++     D   R   IN   V + 
Sbjct: 57  RGATRADLCARFALKDTPAAQRWLEENQLESGRECLLRRVISADGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFER-- 164
            + EL + L       +   +       ++  LD       +      H R+     R  
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLTK--PEHQKTLLDGYTGEYALTQRMAEHYRQWHQSCREL 173

Query: 165 LMRGRNRLLTEGYFD 179
            +  +         D
Sbjct: 174 ALHQQQSQERAARAD 188


>gi|167756666|ref|ZP_02428793.1| hypothetical protein CLORAM_02204 [Clostridium ramosum DSM 1402]
 gi|167702841|gb|EDS17420.1| hypothetical protein CLORAM_02204 [Clostridium ramosum DSM 1402]
          Length = 1010

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 82/289 (28%), Gaps = 38/289 (13%)

Query: 18  YASLRLVFDA----QHTIFVGDNGVGKTNILEAISFLSPG---RGFRRAS--YADVTRIG 68
           +  + + F+        +  G  G GKT I +AI F   G      R +    +D     
Sbjct: 15  HQVVTIDFEPFIQDGLFLITGPTGAGKTMIFDAIMFALYGVSSGSERSSEQFRSDQANHD 74

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDR------------SVRCLQINDVVIRVVDEL 116
           +P+F      +     L   S +      +              + ++    V   + E+
Sbjct: 75  TPTFVELDFILHNQHYLIKRSPRYLLEGKKTPKLPTALLTLPGGKMIEGIKEVNYKIKEI 134

Query: 117 NKHLRISW------LVPSMDRIFSGLSMERRRFLDRMVF---------AIDPRHRRRMID 161
                  +            ++    S ER + L  +            +  R +     
Sbjct: 135 LGIDDKQFKQIAMIAQGEFTKLIYAGSEEREKVLRNLFKTDNFRCLEEQLKLRVKEYKSK 194

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
           ++ L + R  LL     +      ++  +  L  KI I  +E          +  +    
Sbjct: 195 YDLLFKQREMLLKSLDVEDEKID-LDEYLDSLEKKIKIKAMEYQQNAQYYEQKAKELNVI 253

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
                 L    D K   S    KE+Y ++L      D      L   + 
Sbjct: 254 EINNRRLEYLDDLKIQLSNYLSKEDYYRELEKMI-KDLKRANQLQNIYS 301


>gi|33416654|gb|AAH56009.1| XCAP-C protein [Xenopus laevis]
          Length = 361

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  R+   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 73  APRLMITHIVNQNFKSYAGERILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 132

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 133 SKKLSVLIHNSDEHKDVQSCTVEVHFQKI 161


>gi|258565287|ref|XP_002583388.1| chromosome segregation protein sudA [Uncinocarpus reesii 1704]
 gi|237907089|gb|EEP81490.1| chromosome segregation protein sudA [Uncinocarpus reesii 1704]
          Length = 1177

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 97/299 (32%), Gaps = 29/299 (9%)

Query: 60   SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
              A++ ++          + +    L +++  +E    R  + +Q    + +   E + +
Sbjct: 858  RNAEMIQLEQR-------KADIRRELDELAKSIERHQRRMEKSMQKKAALTKQAAECSAN 910

Query: 120  LRISWLVPSM-DRIFSGLSME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            +R   ++P      F          R   ++  +      +++    +    + R  L+ 
Sbjct: 911  IRDLGVLPDEAFTKFKNTDSNAVVKRLHKVNEALKKYSHVNKKAFEQYNNFTKQRETLMG 970

Query: 175  EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                  +   SI+    EL   ++  + E I      +     K  F  +  +  G L  
Sbjct: 971  RREELDASHKSID----ELITILDQRKDEAIERTFKQVSREFAKI-FEKLVPAGRGRLII 1025

Query: 235  KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +        +++      +     S+     +G   S       D    I   S G++ +
Sbjct: 1026 QRKTDPTN-RQDDDIDSDEEETRRSVENYVGVGISVS--FNSKHDDQQRIQQLSGGQKSL 1082

Query: 295  VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIFMTG 349
              + +  A           AP  L DEI A+LD   R A+ +++     +   Q   T 
Sbjct: 1083 CALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQMLKSISEETNGQFICTT 1136


>gi|212715763|ref|ZP_03323891.1| hypothetical protein BIFCAT_00663 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661130|gb|EEB21705.1| hypothetical protein BIFCAT_00663 [Bifidobacterium catenulatum DSM
           16992]
          Length = 568

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 82/276 (29%), Gaps = 44/276 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I       S  +      T   G+ G GK+ +L AI  +S G             
Sbjct: 2   LEELEIHNLGPIRSALIAPAGGMTAITGETGAGKSMLLSAIRLISGGPS-----DGGRVS 56

Query: 67  IGSPSFFSTFA------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           +G+   ++                 E      D  + L  +   S R   +         
Sbjct: 57  VGANEAWAQGVFEVASSPAAVAAAHEAGFEPEDGELFLSRKVPASGRSRSMLSGRSVPRS 116

Query: 115 ELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDR----------------MVFAIDPRHRR 157
            L      +  +    D++    S  +R FLDR                 + A+D R   
Sbjct: 117 VLGSIAAELVTIHGQADQLRIASSARQREFLDRYAGDDVALAAYGKTWNALRAMDER-LE 175

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
           R+   E  MR +   L E     +       +MAEL      AR + I        E  +
Sbjct: 176 RLSSQESSMRQQADYLRESIERINRIDPQPGEMAEL-----RARRDRIE----NAAEIAE 226

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
             N     L  +  +D     S   L +  ++ L  
Sbjct: 227 GVNRALSALDASQVVDDVESSSATDLIDRASQALRA 262


>gi|320537542|ref|ZP_08037484.1| DNA repair protein RecN [Treponema phagedenis F0421]
 gi|320145624|gb|EFW37298.1| DNA repair protein RecN [Treponema phagedenis F0421]
          Length = 562

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 80/223 (35%), Gaps = 26/223 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + +       SL L F +   +  G+ G GK+ ++ A+SFL  G+     +  D+ R
Sbjct: 2   IENIIVKNIALIDSLSLDFASGFNVLSGETGAGKSILIGALSFLLGGK-----AGTDILR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+   + + +     +  A  +   E   +     + +    I+        ++   + 
Sbjct: 57  TGAEEGWVSGSFYLDPQHKAATAWLAERDIEPENGRILLRRS-IKQNGRSAAWIQSYPVA 115

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
            +   +F+        FL  +    D +   ++ +  R +              +     
Sbjct: 116 RTDLEVFTS-------FLVDIHGQHDHQSLFKIAEHRRFLDA-----------YAGLEEE 157

Query: 187 EAQMAELGVKINIARVEM--INALSSLIMEYVQKENFPHIKLS 227
            A    L  +++  R E+  +N     + E ++  NF   +++
Sbjct: 158 TAAFTALYTELSEKRAELEELNISEKQLNEKIELLNFAVEEIT 200


>gi|153810468|ref|ZP_01963136.1| hypothetical protein RUMOBE_00849 [Ruminococcus obeum ATCC 29174]
 gi|149833647|gb|EDM88728.1| hypothetical protein RUMOBE_00849 [Ruminococcus obeum ATCC 29174]
          Length = 563

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 14/119 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L +        + + F     I  G+ G GK+ +L ++  +   R      
Sbjct: 1   MLVHLHVKNLAL-----IEDIEVEFGPGLNILTGETGAGKSILLGSMQLILGSR-----I 50

Query: 61  YADVTRIGSP-SFFSTFARVEG---MEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             D+ R G+  +      +VE     E L  + I+LE       R +     + ++  E
Sbjct: 51  AKDMIREGASYALVELLFQVENPRAEEALGKLGIELEEGQVLLTRKILDGRSINKINGE 109


>gi|271969275|ref|YP_003343471.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
 gi|270512450|gb|ACZ90728.1| ATPase-like protein [Streptosporangium roseum DSM 43021]
          Length = 362

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  + I  F+++ +  L         VG N  GK+N+ +A+ +++
Sbjct: 2  ITRIEIDGFKSFLNFDLDVPP-FLALVGPNSSGKSNLFDAVGYVA 45


>gi|256394565|ref|YP_003116129.1| DNA repair protein RecN [Catenulispora acidiphila DSM 44928]
 gi|256360791|gb|ACU74288.1| DNA repair protein RecN [Catenulispora acidiphila DSM 44928]
          Length = 580

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 15/78 (19%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ L +          L      T   G+ G GKT ++  +  L  GR       + +
Sbjct: 1  MRIRGLGV-----IEDAVLELSPGFTAVTGETGAGKTMVVTGLGLLFGGRS-----DSAL 50

Query: 65 TRIGSPSFFSTFARVEGM 82
           R G+       A VEG 
Sbjct: 51 VRPGAER-----ASVEGR 63


>gi|75675254|ref|YP_317675.1| DNA repair protein RecN [Nitrobacter winogradskyi Nb-255]
 gi|74420124|gb|ABA04323.1| DNA replication and repair protein RecN [Nitrobacter winogradskyi
          Nb-255]
          Length = 561

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 10/72 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M  R+ I+ + +        L + F +   +  G+ G GK+ +L+A +    GRG     
Sbjct: 1  MLARLSIRDIVL-----IERLDIEFASGLAVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61 YADVTRIGSPSF 72
           A + R G+   
Sbjct: 51 DAGLVRHGAEQG 62


>gi|330501981|ref|YP_004378850.1| SMC domain-containing protein [Pseudomonas mendocina NK-01]
 gi|328916267|gb|AEB57098.1| SMC domain-containing protein [Pseudomonas mendocina NK-01]
          Length = 386

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L ++ +R+  SL L    +  +  G NG GK+N+  A+  L+            + R
Sbjct: 2  LHTLAVANYRSINSLILPLG-RLNLITGANGSGKSNLYRALRLLAETAQ--GGVVNALAR 58

Query: 67 IG--SPSFFSTFARVEGMEGLADISIKLETRDD 97
           G    SF++   ++       D+ ++   R +
Sbjct: 59 EGGLESSFWAGPEKISRRMLKGDVPVQGGPRQN 91


>gi|325569751|ref|ZP_08145775.1| DNA repair protein RecN [Enterococcus casseliflavus ATCC 12755]
 gi|325157056|gb|EGC69222.1| DNA repair protein RecN [Enterococcus casseliflavus ATCC 12755]
          Length = 557

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F   ++L L F    T   G+ G GK+ I++A+  L+ GRG      +D  R
Sbjct: 2  LLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRG-----SSDYLR 56

Query: 67 IGSP 70
           G+ 
Sbjct: 57 QGAE 60


>gi|291523590|emb|CBK81883.1| ATPase components of ABC transporters with duplicated ATPase
           domains [Coprococcus catus GD/7]
          Length = 603

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 11/101 (10%)

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
            +   D ++ I   S G+++ V +   LA             +LLLDE + HLD      
Sbjct: 102 QLGIMDYSMPIDQLSGGQKRKVALAKVLAQ---------DFDVLLLDEPTNHLDSAMIRW 152

Query: 334 LFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
           L   + +    I M   D+   D +    K + IS  +   
Sbjct: 153 LEDYLKNFRGTILMVTHDRYFLDQVTN--KILEISQGKIYS 191


>gi|288934009|ref|YP_003438068.1| DNA repair protein RecN [Klebsiella variicola At-22]
 gi|288888738|gb|ADC57056.1| DNA repair protein RecN [Klebsiella variicola At-22]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/195 (17%), Positives = 63/195 (32%), Gaps = 30/195 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E   +  ++     D   R   IN   V + 
Sbjct: 57  RGATRADLCARFALKDTPAAQRWLEENQLESGRECLLRRVISADGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFER-- 164
            + EL + L       +   +       ++  LD       +      H R+     R  
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLTK--PEHQKTLLDGYTGEYALTQRMAEHYRQWHQSCREL 173

Query: 165 LMRGRNRLLTEGYFD 179
            +  +         D
Sbjct: 174 ALHQQQSQERAARAD 188


>gi|300708743|ref|XP_002996545.1| hypothetical protein NCER_100357 [Nosema ceranae BRL01]
 gi|239605855|gb|EEQ82874.1| hypothetical protein NCER_100357 [Nosema ceranae BRL01]
          Length = 1147

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  L I   R+Y    +  + F    T+ VG NG GKT ++E + +++ G
Sbjct: 4  LHKLVIKGVRSYNPNKAQTIDFQHPLTLIVGQNGTGKTTLIECLKYITTG 53


>gi|238753938|ref|ZP_04615298.1| DNA repair protein recN [Yersinia ruckeri ATCC 29473]
 gi|238707926|gb|EEQ00284.1| DNA repair protein recN [Yersinia ruckeri ATCC 29473]
          Length = 553

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 84/269 (31%), Gaps = 46/269 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R     +   + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQPGLTTITGETGAGKSIAIDALGLCLGSR-----ADGSMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               +  A +E  +        L        R    IN   V +  
Sbjct: 57  LGATRADICARFSLADTPTARAWLEQHQLDDSNECLLRRAIGSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFER-----L 165
           + EL +HL       +   +       +++ LD       +    +     + +      
Sbjct: 117 LRELGQHLIQIHGQHAHQLLLK--PDHQKQLLDAYADQPALLAEMKAAYQAWHKSCRALA 174

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           +  +  L  +                    ++    ++ +NA +  I    ++ +  + +
Sbjct: 175 LHQQQSLERDARH-----------------QLLQYHLKELNAFAP-IQGEYEQIDAEYKR 216

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
           L+ +G L     Q+   L ++  + +   
Sbjct: 217 LANSGQLISISQQALQLLADDEQQNILSQ 245


>gi|241589833|ref|YP_002979858.1| ATP-dependent OLD family endonuclease [Ralstonia pickettii 12D]
 gi|241664374|ref|YP_002982734.1| ATP-dependent OLD family endonuclease [Ralstonia pickettii 12D]
 gi|309782956|ref|ZP_07677676.1| hypothetical protein HMPREF1004_04311 [Ralstonia sp. 5_7_47FAA]
 gi|240866401|gb|ACS64062.1| ATP-dependent OLD family endonuclease [Ralstonia pickettii 12D]
 gi|240868545|gb|ACS66204.1| ATP-dependent OLD family endonuclease [Ralstonia pickettii 12D]
 gi|308918380|gb|EFP64057.1| hypothetical protein HMPREF1004_04311 [Ralstonia sp. 5_7_47FAA]
          Length = 677

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFR--NYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K+  + I  FR   YA +RL      TI VG N  GKT+ +EA+
Sbjct: 1  MKLSEIAIMNFRLLQYARMRLDTTGITTILVGPNNSGKTSAIEAM 45


>gi|27381704|ref|NP_773233.1| DNA repair protein [Bradyrhizobium japonicum USDA 110]
 gi|27354873|dbj|BAC51858.1| DNA repair protein [Bradyrhizobium japonicum USDA 110]
          Length = 557

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M  R+ I+ + +        L + F     +  G+ G GK+ +L+A +    GRG     
Sbjct: 1  MLARLSIRDIVL-----IERLDIEFATGLAVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61 YADVTRIGSPSFFSTFA 77
           A + R G+     T  
Sbjct: 51 DAGLVRHGAEQGQVTAV 67


>gi|195941151|ref|ZP_03086533.1| ATP/GTP-binding protein [Escherichia coli O157:H7 str. EC4024]
          Length = 49

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++++ L +  FR Y +   ++ D   T  VG N  GK+ +LEA++  
Sbjct: 1  MRLRKLKLKNFRGYRNSTEIIIDESMTGIVGRNDFGKSTLLEALAIF 47


>gi|146301207|ref|YP_001195798.1| DNA repair protein RecN [Flavobacterium johnsoniae UW101]
 gi|146155625|gb|ABQ06479.1| DNA repair protein RecN [Flavobacterium johnsoniae UW101]
          Length = 550

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 39/115 (33%), Gaps = 8/115 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           I  L+I  +     L + F    +I  G+ G GK+ IL AI  +    +     +     
Sbjct: 2   ITSLSIKNYALIEKLSIDFSKGFSIITGETGAGKSIILGAIGLVLGKRADLTSLKNKEEK 61

Query: 63  DVTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
            V       S      F     ++   +  I+ E       R   IND  + + +
Sbjct: 62  CVIEAQFEISKYNLKEFFEANDLDYEDETIIRREILPSGKSRAF-INDSPVNLQE 115


>gi|117926220|ref|YP_866837.1| hypothetical protein Mmc1_2940 [Magnetococcus sp. MC-1]
 gi|117609976|gb|ABK45431.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
          Length = 410

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKT 41
          ++I  L+++ FR +   +L  D Q T+ V  NG GK+
Sbjct: 1  MRIHHLHLTHFRRFIDFKLTLDPQLTLLVSRNGGGKS 37


>gi|330836629|ref|YP_004411270.1| DNA repair protein RecN [Spirochaeta coccoides DSM 17374]
 gi|329748532|gb|AEC01888.1| DNA repair protein RecN [Spirochaeta coccoides DSM 17374]
          Length = 564

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 108/350 (30%), Gaps = 70/350 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L IS +     + + F +  T+  G+ G GK+ IL AI  L+  +       A V R
Sbjct: 2   LEHLQISNYALIEDVHIDFTSGFTVLSGETGAGKSIILGAIGLLTGEK-----CDATVVR 56

Query: 67  IGSPSFFSTFARVEGM-----EGLADISIKLETRDDRSVRCLQIND----------VVIR 111
            G      +            E L +  ++ +       R ++ N           V  +
Sbjct: 57  TGEKEAVISAELYISDNDPVNEWLKERELETDDGILTLRRVVKDNGRNHIYIQGQTVTRQ 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGR 169
            ++ L   L           +      ++RR LD       +  R+     + ERL +  
Sbjct: 117 ELESLGSFLFDISGQHEHQSLV--SPDKQRRVLDDFGHLDDVRERYGMAYKEHERLTKEL 174

Query: 170 NRL--------------------LTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINAL 208
            +L                    + +         ++ A++A     +I    +E+   L
Sbjct: 175 QQLEAMIAAGARETDYLSYACNEIEKAKLQEGEDDNLAAELARASHAEILHENMELAAGL 234

Query: 209 SSLIMEYVQKENFPH---IKLSLTGFLDGKFDQSFCALK------EEYAKKLFD------ 253
                         H     L+ +  +D    +    L+      E+  + L +      
Sbjct: 235 LKGDAGGQGVLPALHDVVAALARSSHVDSSLQELAQRLESLRLEAEDIRETLKERMATLF 294

Query: 254 ----------GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
                      R+ +    +   GP  S++++   +    +    +GE K
Sbjct: 295 FSPEELDSLQARQAEIQRLKKKYGPSLSEVLIFARNAREKLELAVSGEDK 344


>gi|319787336|ref|YP_004146811.1| chromosome segregation protein SMC [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465848|gb|ADV27580.1| chromosome segregation protein SMC [Pseudoxanthomonas suwonensis
           11-1]
          Length = 1178

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 4   RIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRA 59
           R+++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  
Sbjct: 11  RMRLSTIKLSGFKSFVDPTTLHLPTNMTGVVGPNGCGKSNIIDAVRWVMGESSASRLRGD 70

Query: 60  SYADVTRIGSPSFF-STFARVEGMEGLADISIKLE 93
           S  DV   GS +    + A+VE +   +D +I  E
Sbjct: 71  SLTDVIFSGSSARKPVSMAQVELIFDNSDHTISGE 105


>gi|312891114|ref|ZP_07750637.1| DNA replication and repair protein RecN [Mucilaginibacter paludis
           DSM 18603]
 gi|311296422|gb|EFQ73568.1| DNA replication and repair protein RecN [Mucilaginibacter paludis
           DSM 18603]
          Length = 554

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 108/363 (29%), Gaps = 39/363 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I+ +    +L + F+    I  G+ G GK+ IL A+S +    +  R F      
Sbjct: 2   LQQLKINNYALIDNLEITFNRGLNILTGETGAGKSIILGALSLILGQRAESRYFFNQQKK 61

Query: 63  DVTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +              F     ++  A+  ++ E   D   R   +ND  + +       
Sbjct: 62  CIIEGTFHIGEFHIKAFFEDNDLDYAAETVLRREISADGKSRAF-VNDTPVNLNTLKQLG 120

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
            R+  +      +    +  +   +D +     P          RL +  +  L +   +
Sbjct: 121 ERLIDIHSQHATLEINDAAFQLLVIDSVAKH--PELLNEYQVTYRLFKTSSAKLKQLQDE 178

Query: 180 ----SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
                S     + Q  EL         +    L   +       +     L     +   
Sbjct: 179 SGKAKSELDYHQFQYDELEKANLSEDEQ--EKLEQELYALNNAGDIKRNLLGAHYLMQEG 236

Query: 236 FDQSFCALKEEYAK----KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
              +   L++   +    + F+ +  +   R         D+  +  +           E
Sbjct: 237 ETSALIQLRDAAHQLSALEKFNPQIQELNQRLNSTVIELRDIAAEIENM----------E 286

Query: 292 QKVVL-------VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF--RIVTDIG 342
           Q+ ++       +   L+    +           L +I   L +  +  LF    + ++ 
Sbjct: 287 QRTLINEERVAEINERLSLIYALQKKHRVNTNAELLQIQQELSDKIQQVLFGDEEIEELQ 346

Query: 343 SQI 345
            QI
Sbjct: 347 QQI 349


>gi|312958338|ref|ZP_07772859.1| hypothetical protein PFWH6_0235 [Pseudomonas fluorescens WH6]
 gi|311287402|gb|EFQ65962.1| hypothetical protein PFWH6_0235 [Pseudomonas fluorescens WH6]
          Length = 388

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 93/305 (30%), Gaps = 54/305 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L ++ +R+   L +    +  +  G NG GK+N+  A+  L+            + R
Sbjct: 4   LKTLAVANYRSINKLVVPLG-RLNLVTGPNGSGKSNLYRALRLLAETAQ--GGVINALAR 60

Query: 67  IG--SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN------------DVVIRV 112
            G    +F++    +     + +  + +E      V+ L++              +  + 
Sbjct: 61  EGGLDSTFWAGPETISRR--MRNGDVPVEPIVRHGVKRLRLGFAGEDFSYAISLGLPEKT 118

Query: 113 VDELNKHLRI--------SWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMI 160
           +   +    +            P+   +     M R    R +   ++    P +     
Sbjct: 119 LSYFSLDPEVKKECIWAGHLYRPASLLVQRSGPMVRARDGRAW--DVLAQHTPNYHSLFD 176

Query: 161 DFER--------LMRGRNRLLT---------EGYFDSSWCSSIEAQMAELGVKINIARVE 203
                       L+R   R            +         +    +   G  +  A ++
Sbjct: 177 QVGSLRGSPEVLLLRESIRGWRFYDHFRSDVDAPVRQPQLGTRTPVLHHDGRDLAAA-LQ 235

Query: 204 MINAL-SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            I  +     ++    + FP  +L++     G+F  +    +E   + L      D   R
Sbjct: 236 TIREIGDPEALQRAVSDAFPGARLNIEPLQGGRF--AIELYQEGLLRPLSAAELSDGTLR 293

Query: 263 RTLIG 267
             L+ 
Sbjct: 294 YLLLI 298


>gi|293376583|ref|ZP_06622811.1| DNA repair protein RecN [Turicibacter sanguinis PC909]
 gi|292644809|gb|EFF62891.1| DNA repair protein RecN [Turicibacter sanguinis PC909]
          Length = 561

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 19/142 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I        L+L  + + T+  G+ G GK+ I++AIS L   R     +  D+ R
Sbjct: 2   LSHLSIQNMAIIEGLQLDLNQKMTVLTGETGAGKSIIIDAISLLIGDR-----ASTDLIR 56

Query: 67  IGSPSFFSTFAR-------VEGMEGLADISIKLETRDDRSVRC-----LQINDV--VIRV 112
                              ++      DI  + +    R+++      +++N        
Sbjct: 57  HHEEMAVVEGVFEIENNKPLKSYLIAHDIPFETQLIVKRTIKRSGNGQIRVNGELMTANQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFS 134
           + E+ ++L    +     R+F+
Sbjct: 117 LKEIGQYLVDIHVQHDTHRLFN 138


>gi|146338339|ref|YP_001203387.1| hypothetical protein BRADO1247 [Bradyrhizobium sp. ORS278]
 gi|146191145|emb|CAL75150.1| hypothetical protein BRADO1247 [Bradyrhizobium sp. ORS278]
          Length = 645

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
           I  L I  +R +        A   + +G    GKT ILEAI+ L
Sbjct: 61  ILRLKIERYRAFQKFDWFLRAGLNVILGGGDAGKTTILEAIALL 104



 Score = 39.5 bits (91), Expect = 0.82,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 20/104 (19%)

Query: 289 TGEQKVVLVGI-------------------FLAHARLISNTTGFAPILLLDEISAHLDED 329
            G+    L+G+                    LA   +        PI L+DE    L+  
Sbjct: 293 QGQSISALIGLTAAIEESRLPLSSWGSGTRRLASLAVAQACRSGCPITLVDEAERGLEPY 352

Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           ++  L   +    SQ+ MT        +  E A    +S    +
Sbjct: 353 RQRKLVSELAAGPSQVVMTTHSAPALVA-AEPATIWYLSQGHVI 395


>gi|32265977|ref|NP_860009.1| ATPase [Helicobacter hepaticus ATCC 51449]
 gi|32266299|ref|NP_860331.1| hypothetical protein HH0800 [Helicobacter hepaticus ATCC 51449]
 gi|32262026|gb|AAP77075.1| predicted ATPase [Helicobacter hepaticus ATCC 51449]
 gi|32262349|gb|AAP77397.1| conserved hypothetical protein [Helicobacter hepaticus ATCC
          51449]
          Length = 349

 Score = 46.4 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          I+ + +  ++   S+ +   AQ  IFVG N  GKT++LE I  
Sbjct: 2  IESIEVKNYKVLDSIEVENLAQINIFVGKNNCGKTSLLETIFL 44


>gi|320014244|gb|ADV97815.1| recombination and repair protein [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 83/277 (29%), Gaps = 34/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 2   LVQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAVDALGLCLGNRS-----DGSMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E      +    L        R    IN   V +  
Sbjct: 57  LGATRADICARFSLADTPSAHQWLENNHLDDNNECLLRRAIGADGRSRGFINGTPVPVSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMI 160
           + EL +HL       +   +       +++ LD            +  + I  +  R + 
Sbjct: 117 LRELGQHLIQIHGQHAHQLLLK--PDHQKQLLDAYANQSSLLAEMKAAYQIWHQSCRDLA 174

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKE 219
             ++    R        +     +S   Q  E   + I   R+     L SL  + +Q  
Sbjct: 175 LHQQQSLERTARQELLQYQLKELNSFSPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL 234

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +       L+     K   +  A  +E    L +  +
Sbjct: 235 SDDEQNNILSQLYAAKHQLTELASMDEQFNNLLNMLE 271


>gi|303389895|ref|XP_003073179.1| Rad50-like DNA repair protein [Encephalitozoon intestinalis ATCC
          50506]
 gi|303302324|gb|ADM11819.1| Rad50-like DNA repair protein [Encephalitozoon intestinalis ATCC
          50506]
          Length = 1240

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K L I   R+++      L F +  T+ VG NG GKT I+E++ ++S G
Sbjct: 4  LKKLMIRGIRSFSHREGSILEFYSPLTLIVGPNGTGKTTIIESLKYISTG 53


>gi|260219871|emb|CBA26837.1| hypothetical protein Csp_G38630 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 576

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + +K + + +F   + L L  ++  ++  G+ G GK+ +++A+  ++  R     +   V
Sbjct: 1  MALKRIVLRDFVIVSELELDLESGFSVLTGETGAGKSILIDALQLVTGAR-----ADTGV 55

Query: 65 TRIGSP 70
           R G+ 
Sbjct: 56 IREGAA 61


>gi|254523223|ref|ZP_05135278.1| chromosome segregation protein SMC [Stenotrophomonas sp. SKA14]
 gi|219720814|gb|EED39339.1| chromosome segregation protein SMC [Stenotrophomonas sp. SKA14]
          Length = 1167

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGVVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-----------INDV 108
             DV   GS +    + A VE +   +D +I  E      +   +           +N  
Sbjct: 61  LTDVIFSGSNARKPVSQATVELIFDNSDHTISGEYASFNEISVKRTVSRDGTSNYYLNGT 120

Query: 109 VIRVVD 114
             R  D
Sbjct: 121 KCRRRD 126


>gi|209559663|ref|YP_002286135.1| Putative DNA repair and genetic recombination protein
           [Streptococcus pyogenes NZ131]
 gi|209540864|gb|ACI61440.1| Putative DNA repair and genetic recombination protein
           [Streptococcus pyogenes NZ131]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 34/234 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTEVIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----TRDD---RSVRCLQINDVVIRVV- 113
            G+       FFS  A  E +  L    I +E     R D         +IN  ++ +  
Sbjct: 57  RGANKAEIEGFFSVDATPELVACLESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLAT 116

Query: 114 ---------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                    D   +H +   + P + +           F D+    +   ++     ++ 
Sbjct: 117 LKQVGQFLVDIHGQHDQEELMRPQLHQQILDA------FGDKAFEQLKENYQLIFDRYKS 170

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQ 217
           L R                  +  Q+AE+    ++    + +N     +M + Q
Sbjct: 171 LRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQ 224


>gi|167562461|ref|ZP_02355377.1| hypothetical protein BoklE_07854 [Burkholderia oklahomensis
          EO147]
 gi|167569644|ref|ZP_02362518.1| hypothetical protein BoklC_07378 [Burkholderia oklahomensis
          C6786]
          Length = 392

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 4  LTALAIAHYRSLRELIVPL-ATLNVITGPNGSGKSSLYRALRLLA 47


>gi|153871685|ref|ZP_02000794.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152071847|gb|EDN69204.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 337

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 80/225 (35%), Gaps = 11/225 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + I+ F+ + + +     +  + VG N VGKT ++EA       +  R    A V  
Sbjct: 12  ITEIEINNFKCFENFKANGFKRVNLIVGKNNVGKTALMEACWIYERNKNSRSLIEAYVNM 71

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
           + + +    F  +       D+          +   ++ +D  +++  E N       + 
Sbjct: 72  VNTITLIKEFRNLHN-YASYDLQTAFALLRKFNRLLIKSHDKSVKLNIETNNLEVKVSIN 130

Query: 127 PSMDR-------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
                       +F  +  +++ F    + +    +   +  ++ +   R +     Y +
Sbjct: 131 DFEINTSLTNSHLFEEMLSDKKNFSKNFISSCQIDNDLMISLYDHIKENRKKDNLNQYIN 190

Query: 180 SSWCSSIEAQMAELGVKINIA-RVEM--INALSSLIMEYVQKENF 221
               + +E ++ +   K+ +A R +   I  L   +  YV   + 
Sbjct: 191 EFDSNILEFEIIKNVPKVFLASRQQFEDIAELGHGLKRYVAIISA 235


>gi|295397732|ref|ZP_06807803.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
 gi|294974018|gb|EFG49774.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
          Length = 915

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 59/171 (34%), Gaps = 10/171 (5%)

Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +  A    ++    + +E+   +         T        +        +   L D R 
Sbjct: 752 LLQAYQAQVDEAYQMSVEWAANKLAIATFEKATVGESSDVKERVLTNASRFLVDLSDSRF 811

Query: 257 MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
            +       +    +D      D  +++   S GE+ ++ V +  A     +        
Sbjct: 812 TNLAFSEEGMTVRLAD------DSEVSVNQLSRGEKALLFVAMRFAFMD--AQLGNIELP 863

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNETAKFM 365
           +++DE  +HLD   R+ ++R +    +  QI     D ++ D +   A+ +
Sbjct: 864 IIIDEAFSHLDRKYRSNIYRFLQKFAASHQIIFFTVDDTLLDLVEAPAQHV 914



 Score = 43.4 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I+   I  +  +            +F G NG GKT ++     LS   GF      + 
Sbjct: 1   MHIQRFEIFGYGKWVDQSFQLTPNLNVFSGLNGSGKTTLMS--FLLSVMFGFPNTRRKNA 58

Query: 65  TRIGSPSFFSTFARVEGMEGLA-DISIKLETRDDRSVRCLQINDVVIR 111
               +        R+        D+ I+    + +      IN+   +
Sbjct: 59  RNYDTNDNVKYGGRLYLSNTKYGDVMIERTKTNGKQQLAYTINEGEKQ 106


>gi|229822808|ref|ZP_04448878.1| hypothetical protein GCWU000282_00097 [Catonella morbi ATCC 51271]
 gi|229787621|gb|EEP23735.1| hypothetical protein GCWU000282_00097 [Catonella morbi ATCC 51271]
          Length = 1177

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 15  FRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYADVTRIGSP 70
           F+++A    + FD   T  VG NG GK+N+ EAI ++      +  R     DV   G+ 
Sbjct: 4   FKSFADKTVIEFDRGMTAVVGPNGSGKSNLSEAIRWVLGEQSAKSLRGNKMEDVIFNGTQ 63

Query: 71  SF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           +      A+V  +    D  +  +  +    R    N    
Sbjct: 64  ARKAVNLAKVTLVLNNEDRYLDYDFSEISITRSYNRNGESQ 104


>gi|284033299|ref|YP_003383230.1| DNA repair protein RecN [Kribbella flavida DSM 17836]
 gi|283812592|gb|ADB34431.1| DNA repair protein RecN [Kribbella flavida DSM 17836]
          Length = 574

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 15/99 (15%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M + I+I  L +          L  D   T   G+ G GKT ++  ++ L  GR     +
Sbjct: 1  MLSEIRITGLGV-----IEDATLDLDPGFTAVTGETGAGKTMVVTGVNMLLGGR-----A 50

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99
           + + R G        ARVEG       SI  +  D   
Sbjct: 51 DSGLVRHG-----VRRARVEGRASAVPKSIVRQAEDRGG 84


>gi|325839432|ref|ZP_08166871.1| DNA repair protein RecN [Turicibacter sp. HGF1]
 gi|325490552|gb|EGC92868.1| DNA repair protein RecN [Turicibacter sp. HGF1]
          Length = 561

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 19/142 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I        L+L  + + T+  G+ G GK+ I++AIS L   R     +  D+ R
Sbjct: 2   LSHLSIQNMAIIEGLQLDLNQKMTVLTGETGAGKSIIIDAISLLIGDR-----ASTDLIR 56

Query: 67  IGSPSFFST-FARVEGMEGL------ADISIKLETRDDRSVRC-----LQINDV--VIRV 112
                        +E  + L       DI  + +    R+++      +++N        
Sbjct: 57  HHEEMAVVEGIFEIENNKPLKSYLIAHDIPFETQLIVKRTIKRSGNGQIRVNGELMTANQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFS 134
           + E+ ++L    +     R+F+
Sbjct: 117 LKEIGQYLVDIHVQHDTHRLFN 138


>gi|317128434|ref|YP_004094716.1| DNA repair protein RecN [Bacillus cellulosilyticus DSM 2522]
 gi|315473382|gb|ADU29985.1| DNA repair protein RecN [Bacillus cellulosilyticus DSM 2522]
          Length = 575

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 94/277 (33%), Gaps = 46/277 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F       + F+   T+  G+ G GK+ I++AI  L  GRG       D  R
Sbjct: 2   LMELSIRNFAIIDYTTISFEKGLTVLTGETGAGKSIIIDAIGQLIGGRG-----SVDFVR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVI-- 110
            GS              S+  T      ++   D ++ L+    +  + + +IN  ++  
Sbjct: 57  HGSARAEIEGLFSIEKSSYMLTLFENFNIDYSEDDTVLLKREITKQGKSVCRINGKLVTL 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGL--SMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
            V+ E+ + L           +       +   RF +  +      +      +ER  + 
Sbjct: 117 AVLREIGQSLVDIHGQHEHQHLLQMDKHLLLLDRFAENKLKQTKKEYEEL---YERFYKK 173

Query: 169 RNRLLTEGYFDSSWCSSIEA---QMAE-----------LGVKINIARVEMINALSSLIME 214
           R +L      ++     ++    Q+ E           L +K    R++    L   +  
Sbjct: 174 REKLKQLTENENEMMQRLDLIQYQLEEITNAKLQPNEDLLLKEEKQRLDYSEELYKSVHS 233

Query: 215 YVQKENFPHIKL-----SLTGFLD-GKFDQSFCALKE 245
             +        L     S+    D  K D+S   ++E
Sbjct: 234 AYEALYGDQKGLEWIMHSMQQMEDAAKIDESLQKIQE 270


>gi|147673450|ref|YP_001217887.1| hypothetical protein VC0395_A1963 [Vibrio cholerae O395]
 gi|5830765|emb|CAB54591.1| putative ATP binding protein [Vibrio cholerae]
 gi|146315333|gb|ABQ19872.1| conserved hypothetical protein [Vibrio cholerae O395]
          Length = 265

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 11/98 (11%)

Query: 4   RIKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +I+++ +++ +++ ++ L+     +  TI +G+NG GK+ ILE+IS              
Sbjct: 61  KIRLRNISLYDYKKFSKLKFTSSEKNTTIIIGNNGSGKSTILESISKCLQFLS------- 113

Query: 63  DVTRIGSPS---FFSTFARVEGMEGLADISIKLETRDD 97
           D  RI + +   F  +   +  + G   +   LE  +D
Sbjct: 114 DNIRIQNNNNYKFQDSEINIHSISGQTIVRCILEIEND 151


>gi|114332087|ref|YP_748309.1| chromosome segregation protein SMC [Nitrosomonas eutropha C91]
 gi|114309101|gb|ABI60344.1| condensin subunit Smc [Nitrosomonas eutropha C91]
          Length = 1190

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTI-FVGDNGVGKTNILEAISFL---SPGRGF 56
          M +++++  + ++ F+ +    +V    + +  VG NG GK+N+++A+ ++   S     
Sbjct: 1  MPSKLRLTEIKLAGFKTFVDPTVVPVPGNLVGIVGPNGCGKSNVIDAVRWVLGESRASAL 60

Query: 57 RRASYADVTRIGS 69
          R  S  DV   GS
Sbjct: 61 RGESLQDVIFSGS 73


>gi|119387189|ref|YP_918244.1| DNA repair protein RecN [Paracoccus denitrificans PD1222]
 gi|119377784|gb|ABL72548.1| DNA replication and repair protein RecN [Paracoccus denitrificans
          PD1222]
          Length = 547

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +      L L F     +  G+ G GK+ +L+ + F+   RG      AD+ R
Sbjct: 2  LRHLDIRDMLLIDRLELAFRPGLNVLTGETGAGKSILLDCLGFVLGWRG-----RADLVR 56

Query: 67 IGSPSFFSTFA 77
           G+     T  
Sbjct: 57 AGASQGEVTAV 67


>gi|239917916|ref|YP_002957474.1| DNA repair protein RecN [Micrococcus luteus NCTC 2665]
 gi|239839123|gb|ACS30920.1| DNA repair protein RecN [Micrococcus luteus NCTC 2665]
          Length = 580

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 81/260 (31%), Gaps = 44/260 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR------ 54
           M + ++I  L +          +  D   T+  G+ G GKT ++ A+  L   R      
Sbjct: 1   MIDHLRISGLGV-----IGEATVDLDPGFTVVTGETGAGKTMVVTALGLLLGARADAGAV 55

Query: 55  -----------GFRRASYADVTRIGSPSFFSTFARVEGMEGLADI----SIKLETRDDRS 99
                      G R A+     R+   +        EG +G  D+    S+       RS
Sbjct: 56  RRGSSRAVVDAGVRVAADHAALRLAQEAGAVV---DEGDDGTHDLVLSRSVTASGEGTRS 112

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERR---RFLDRMVFAIDPRHR 156
                   V + ++ E+   L          R+  G   +R     F    + A    +R
Sbjct: 113 RATAGGRSVPVGLLSEIGATLVAVHGQNDQVRL-QGADAQRHALDAFGGAELAAALRAYR 171

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-----------VKINIARVEMI 205
                +    R R  L       +    +++  + E+            ++  I R+E +
Sbjct: 172 ADHAAWTAARREREELTAHRQERAREAEALQRSLEEIDLAEPQEGEDEELRALIRRLEDV 231

Query: 206 NALSSLIMEYVQKENFPHIK 225
             L +   E   +   P + 
Sbjct: 232 EELRAASGEAHARLAGPDVD 251


>gi|164423145|ref|XP_958567.2| hypothetical protein NCU09063 [Neurospora crassa OR74A]
 gi|157069967|gb|EAA29331.2| hypothetical protein NCU09063 [Neurospora crassa OR74A]
          Length = 1650

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 10/91 (10%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            RI I  L +  F++YA    +  F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 301 PRIVITNLVLINFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 357

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                   +    +      +  VE      
Sbjct: 358 MRQGKISALIHNSAQFPNLDYCEVEVHFQEV 388


>gi|146303874|ref|YP_001191190.1| hypothetical protein Msed_1102 [Metallosphaera sedula DSM 5348]
 gi|145702124|gb|ABP95266.1| hypothetical protein Msed_1102 [Metallosphaera sedula DSM 5348]
          Length = 411

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
           +  L  S F+  A   L       I +G N  GKT +LEAI  L
Sbjct: 94  VDRLRFSNFKGIAEGELDLRD-VAIILGGNNAGKTTVLEAIYLL 136


>gi|115530857|emb|CAL49314.1| smc4 structural maintenance of chromosomes 4-like 1 (yeast)
           [Xenopus (Silurana) tropicalis]
          Length = 338

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  R+   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 69  APRLMITHIVNQNFKSYAGERILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 128

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 129 SKKLSVLIHNSDEHKDVQSCTVEVHFQKI 157


>gi|83591841|ref|YP_425593.1| hypothetical protein Rru_A0502 [Rhodospirillum rubrum ATCC 11170]
 gi|83574755|gb|ABC21306.1| hypothetical protein Rru_A0502 [Rhodospirillum rubrum ATCC 11170]
          Length = 1325

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 6   KIKFLNISEFRNY-----------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
           K+  ++   FR                 L   A  T+F G NG GKT+++ A+ +   G 
Sbjct: 101 KLVRIDAHRFRGLHRHCAEGGIDPKPFELELSAPATLFRGFNGAGKTSLVSAVCWCLTGL 160

Query: 55  GFRR 58
           G R 
Sbjct: 161 GHRS 164


>gi|87124553|ref|ZP_01080402.1| RecF protein:ABC transporter [Synechococcus sp. RS9917]
 gi|86168125|gb|EAQ69383.1| RecF protein:ABC transporter [Synechococcus sp. RS9917]
          Length = 898

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +++    +   R +  L LVF    T+  G N  GK+ ++EA+      R
Sbjct: 1  MRLTHCRLESVRRHRQLELVFAPGVTLVAGANESGKSTLVEAMHRALFLR 50


>gi|299138491|ref|ZP_07031670.1| DNA repair protein RecN [Acidobacterium sp. MP5ACTX8]
 gi|298599737|gb|EFI55896.1| DNA repair protein RecN [Acidobacterium sp. MP5ACTX8]
          Length = 563

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 20/154 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L    +        VF     +  G+ G GK+ +++A+  L  G+     + +D+ R
Sbjct: 2   LLELRAENYAVIDHAVAVFGPGLNLLTGETGAGKSILIDALVLLLGGK-----ASSDLVR 56

Query: 67  IGSP------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVV 113
            G+                +   R        +I ++ E   +   R    N    + V+
Sbjct: 57  FGAEKAVLGCVFESTIGADAILERNGIDPESGEILLRREIGANGKGRVFINNQPATVGVL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147
            +L   L +       + + +  + ++R  LDR 
Sbjct: 117 RQLAPELALV--HAQSETLIAFDAEQQRLLLDRF 148


>gi|197264514|ref|ZP_03164588.1| DNA sulfur modification protein DndD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197242769|gb|EDY25389.1| DNA sulfur modification protein DndD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 669

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 75/232 (32%), Gaps = 31/232 (13%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           +     +R ++ D E+ +      +     D      + A + +L  K    R +  + L
Sbjct: 400 WQRFDMYRHQLADIEQQLEQAAANIARAPEDEQLMD-LFAALRDLDHKREKQRQKYRSLL 458

Query: 209 SSLIMEYVQKEN-------FPHIKLSLTGFLDG-KFDQSFCALKEEYAKKLFDGR----- 255
                   Q+ +          I  S  G     K  Q    L + Y+  L   R     
Sbjct: 459 EEAKRTKQQQLDCVRQVQKAHDITRSQHGLSSAFKNAQETINLLDYYSNVLTQARVKKLS 518

Query: 256 -----------KMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                      + + +     I P   D+ +VD     I     S GE+++  + I    
Sbjct: 519 ANFEIAYHKLARKEDLQLNAHINPQTFDVELVDEKGSVINRKLLSAGEKQIYAIAI---- 574

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
              ++ T+G    +++D     LD   R+ L      +   Q+ +  TD  V
Sbjct: 575 LEALAKTSGRDFPVIIDTPLGRLDSQHRDKLINHYFPEASHQVVLLSTDTEV 626



 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPG 53
          + IK L +  FR +  +  +    +            +F G NG GKT+IL AI     G
Sbjct: 1  MLIKQLVLHNFRVFCGTHTIDLAPRKRPHEVNPRPIVLFGGLNGAGKTSILSAIRLALYG 60

Query: 54 R 54
          R
Sbjct: 61 R 61


>gi|77165172|ref|YP_343697.1| chromosome segregation protein SMC [Nitrosococcus oceani ATCC
           19707]
 gi|254434247|ref|ZP_05047755.1| chromosome segregation protein SMC [Nitrosococcus oceani AFC27]
 gi|76883486|gb|ABA58167.1| condensin subunit Smc [Nitrosococcus oceani ATCC 19707]
 gi|207090580|gb|EDZ67851.1| chromosome segregation protein SMC [Nitrosococcus oceani AFC27]
          Length = 1170

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + +  F+++     L   +     VG NG GK+NI++A+ ++   S  +  R  S
Sbjct: 1   MRLKKIKLVGFKSFVDPTSLPLPSNRMAIVGPNGCGKSNIIDAVRWVMGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQIND 107
            ADV   GS S            F ++   + G      +I+IK +   D    C  +N 
Sbjct: 61  MADVIFNGSTSRKPVGQCSVELVFDNSKGNLGGQYAAYNEIAIKRQVSRDGQS-CYFLNG 119

Query: 108 VVIRVVD 114
              R  D
Sbjct: 120 ARCRRRD 126


>gi|55821220|ref|YP_139662.1| DNA repair and genetic recombination protein [Streptococcus
           thermophilus LMG 18311]
 gi|55737205|gb|AAV60847.1| DNA repair and genetic recombination protein [Streptococcus
           thermophilus LMG 18311]
          Length = 556

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 93/278 (33%), Gaps = 35/278 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I  F     + L F+   T+  G+ G GK+ I++A++ +   R     + ++V R
Sbjct: 2   LLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGAR-----ASSEVVR 56

Query: 67  IGSP-----SFFST------FARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
             +P      FFS        + +E      +  + +     ++ R + +IN  ++ +  
Sbjct: 57  HSAPKAEIQGFFSIEQNPALVSLLEDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTI 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
                  +  +    D+               F D+  F     ++     +  L +   
Sbjct: 117 LKAVGNFLVDIHGQHDQEELMRPALHISMLDAFGDKDFFQAKKEYQEYFDRYRELRKAVL 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINALS-----SLIMEYV 216
                     +    +  Q+AE+            +   R +++N        +     +
Sbjct: 177 EKQKNEKEHKARIEMLAFQIAEIEAASLKTGEDLALMKERDKLLNHKQIADTLTNAYVML 236

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
             E+F  +    +   D +  + + +  +E +  L + 
Sbjct: 237 DNEDFSSLSNVRSAMNDLQSLEEYDSDYKELSNNLSEA 274


>gi|26990687|ref|NP_746112.1| hypothetical protein PP_3982 [Pseudomonas putida KT2440]
 gi|24985678|gb|AAN69576.1|AE016591_4 hypothetical protein PP_3982 [Pseudomonas putida KT2440]
          Length = 881

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 7   IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           +  L I  FR + S        +  +F G NG GKT++ EA+ +   G
Sbjct: 86  LSELTIGPFRGFRSPETFDLTKRLILFYGPNGSGKTSLCEALEYALLG 133


>gi|323144958|ref|ZP_08079518.1| conserved domain protein [Succinatimonas hippei YIT 12066]
 gi|322415237|gb|EFY06011.1| conserved domain protein [Succinatimonas hippei YIT 12066]
          Length = 632

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 26/46 (56%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++   I  FR    L++ F+   ++ +G+N  GK+++L A+  +
Sbjct: 1  MYLETAEIFNFRGIRHLKINFEEDSSVLIGENSWGKSSLLSALWMM 46


>gi|288920320|ref|ZP_06414632.1| DNA repair protein RecN [Frankia sp. EUN1f]
 gi|288348268|gb|EFC82533.1| DNA repair protein RecN [Frankia sp. EUN1f]
          Length = 583

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/217 (18%), Positives = 71/217 (32%), Gaps = 43/217 (19%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----- 55
           M   I+I+ L + +        L      T+  G+ G GKT I++ +  L+ GR      
Sbjct: 1   MLEEIRIRGLGVID-----DAVLDLAPGLTVVTGETGAGKTMIVQGLGLLTGGRADYALV 55

Query: 56  ------------FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETR----DDRS 99
                          A+ + + +           RV  ++G  D  + L  R    + RS
Sbjct: 56  SAAAGRASVEARLVVAADSPLVK-----------RVHELDGELDDDVILMGRTLTAESRS 104

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM 159
              L    V   V+ E+ +++          R+       +R  LDR   +         
Sbjct: 105 RAQLAGRSVPASVLAEITENVIAVHGQSEAQRLRR--PAMQRDALDRFAGSAVAEPLAHY 162

Query: 160 ID-FERLMRGRNRLLT---EGYFDSSWCSSIEAQMAE 192
              + RL + R RL          +     +   +AE
Sbjct: 163 ARVYARLAKARARLAEITGRARERAQEAELLRLGLAE 199


>gi|326319531|ref|YP_004237203.1| SMC domain-containing protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323376367|gb|ADX48636.1| SMC domain protein [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 944

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 27/162 (16%)

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           A+ G  +  AR   I  L S +  Y +       +L     ++   D       +     
Sbjct: 760 AQAGTAVMNARESYIEVLRSTVRRYRKNIQ----ELGALAGVEVAADLPLLENDD----- 810

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLI 307
                        T++      +   +  K    +     S G+Q  V+  + L    L 
Sbjct: 811 -------------TVLAQAGLKVHFAFDGKGSIGMNDGEASGGQQ--VIKSLILLVGLLK 855

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
              +G    + +DE  AHLD      +   +    +Q  +T 
Sbjct: 856 DEESGSGGFVFIDEPFAHLDVRNIQLVGHFLRSTQAQYVLTT 897



 Score = 40.3 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 69/236 (29%), Gaps = 44/236 (18%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-- 63
            ++ L +  +     + L  DA      G NG GKT +L+A+  L    G R ++  D  
Sbjct: 3   HLQTLELVHWDYCQRVALPLDASIITIAGPNGSGKTTLLDAMRTLL---GLRCSAPRDYR 59

Query: 64  -VTRI-GSPSFFSTFARVEGMEGLADISIKLETRD------DRSVRCLQINDVVIRVVDE 115
              R  G+ + +         +G    S     R         + R  +      R    
Sbjct: 60  TYARHAGAQTAWLRAVVDNRPQGRQTSSRPFARRLLYADQVTLACRIDKNGGDWQRRYCL 119

Query: 116 LNKHLRISWL--VPSMDRIFSGLSMERR------------RFLDRMVFAIDP--RHR--- 156
           L+  + I  L   P  D  F G+    R            R L       D         
Sbjct: 120 LDGDVSIEQLRDTPEKDLGFMGVEAWGRVLGAAGLSPAIARVLSLEQGQTDRLCEFSPRE 179

Query: 157 ------------RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                       + +  +++    + +L  E            AQ+ EL  ++   
Sbjct: 180 LLRLVFDVFGDQQVLDAYDQAREHQQQLSREMAQAERELDHSRAQLTELSNRVTSY 235


>gi|268323491|emb|CBH37079.1| conserved hypothetical protein [uncultured archaeon]
 gi|268326507|emb|CBH40095.1| conserved hypothetical protein [uncultured archaeon]
          Length = 588

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 128/383 (33%), Gaps = 51/383 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + I+ FR   ++ +  + Q TI  G N  GKT+ L+A+      R F          
Sbjct: 5   IKTIRIAGFRGLENIEIALE-QTTILTGMNNTGKTSFLKALQLALGNRQFVT-------- 55

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                FF     V     + D+ I     D +       +  ++  +D +      +  V
Sbjct: 56  --QDDFFIPGNSVSEKI-IIDLLIVPINDDGKRGEDFSEDWEILFTIDRIRNDDTGNSFV 112

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRR---RMIDFERLMRGRNRLLTEGYFDSSWC 183
           P +  I +  +++      + +    P  ++      D +      N   T  YFD    
Sbjct: 113 P-LRTIITFDAIKNSYKTQQFILQNWPELKQDDVNWFDID------NGNKTSFYFDEVPF 165

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             IEAQ     ++    R   +  + S I     KE    I+  +    +     S   +
Sbjct: 166 FYIEAQ--RDILEDIKLRNSYLGKMLSKIK--YSKEAIKEIEAQIESLNEEAV--SSSDI 219

Query: 244 KEEYAKKLFD-GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE----------- 291
                  L +    MD+ S    I P      +   +K +TI +    E           
Sbjct: 220 LSNIKTTLKELDTAMDTRSEGIEITPFTKK--IRDLNKGLTIYYTDQKEPFPMEYHGMGT 277

Query: 292 -QKVVLVGIF----LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
                L+ +     L       + + F PIL ++E  AHL  + +  L+  +  I  Q  
Sbjct: 278 RSWSSLLTLKSFISLRSINAQKDQSVFFPILAIEEPEAHLHPNAQKKLYGQMDAIAGQKI 337

Query: 347 MTGTDKSVFDSLNETAKFMRISN 369
           ++         +   AK  +I N
Sbjct: 338 IST----HSPYIAAAAKLGQIRN 356


>gi|254718670|ref|ZP_05180481.1| chromosome segregation protein SMC [Brucella sp. 83/13]
 gi|265983651|ref|ZP_06096386.1| chromosome segregation protein SMC [Brucella sp. 83/13]
 gi|306837781|ref|ZP_07470645.1| chromosome segregation protein SMC [Brucella sp. NF 2653]
 gi|264662243|gb|EEZ32504.1| chromosome segregation protein SMC [Brucella sp. 83/13]
 gi|306407122|gb|EFM63337.1| chromosome segregation protein SMC [Brucella sp. NF 2653]
          Length = 1152

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSKLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|239826781|ref|YP_002949405.1| SMC domain protein [Geobacillus sp. WCH70]
 gi|239807074|gb|ACS24139.1| SMC domain protein [Geobacillus sp. WCH70]
          Length = 417

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +K ++   ++++++  L  D   T+ +G N  GK+N L+ I+FLS     R     ++  
Sbjct: 2  LKEVHYKNWKSFSNATLYIDP-LTVLIGTNASGKSNALDGIAFLS-----RVVQGKELQT 55

Query: 67 I-GSPSFFSTFARVEGMEGLAD 87
          I    S     A ++ + G  +
Sbjct: 56 ILSGDSALLLEANIQAIRGGVE 77


>gi|227501658|ref|ZP_03931707.1| ATP-binding protein [Corynebacterium accolens ATCC 49725]
 gi|227077683|gb|EEI15646.1| ATP-binding protein [Corynebacterium accolens ATCC 49725]
          Length = 862

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASY 61
          ++I  L I   R    L L    +    +  G+N  GK+ I+EA+  +   +   R +  
Sbjct: 1  MRIHSLEIKNVRGIEHLVLDDLPETGVVVIHGENEAGKSTIVEALDVVLTEKHTARPSGI 60

Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADI 88
           D+  +G        A +   +    I
Sbjct: 61 RDLQPVGKDVSPEVIADISVGQYRFRI 87


>gi|150395771|ref|YP_001326238.1| chromosome segregation protein SMC [Sinorhizobium medicae WSM419]
 gi|150027286|gb|ABR59403.1| chromosome segregation protein SMC [Sinorhizobium medicae WSM419]
          Length = 1153

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFTKLRLLGFKSFVEPTEFIIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  +  A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVGLYLDNSDRTAPAAFNDSDEIQVTRRIEREQGSVYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        + +     RR+ L+
Sbjct: 121 EARAKDVQLLFADASTGARSPSMVGQGRIGELIAAKPQARRQLLE 165


>gi|94496772|ref|ZP_01303347.1| hypothetical protein SKA58_16573 [Sphingomonas sp. SKA58]
 gi|94423785|gb|EAT08811.1| hypothetical protein SKA58_16573 [Sphingomonas sp. SKA58]
          Length = 673

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 19/136 (13%)

Query: 5   IKIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAI----SFLSPGRG 55
           + ++ + + +FR +      +L    D   T+   +NGVGKT +L A+      L+  + 
Sbjct: 1   MWLEEITLKDFRCFFGEHVLTLSTDEDENVTLIHAENGVGKTTLLNAMLWCFYGLTTAKF 60

Query: 56  FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLET-------RDDRSVRCLQINDV 108
            R+    D+    + +  ST A VE +    D   +            +R+   +++++ 
Sbjct: 61  ERKH---DLVNHDAMAAGSTSAFVEVLFEHNDKRYRARRYAPAPGSSVERAFSIMRMDEG 117

Query: 109 VIRVVDELNKHLRISW 124
               +D  +  +    
Sbjct: 118 HSHQIDNPDSFINTVI 133


>gi|79152363|gb|AAI07945.1| Smc4 protein [Rattus norvegicus]
          Length = 434

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 77  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 136

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 137 SKKLSVLIHNSDEHTDIQSCTVEVHFQKI 165


>gi|74220594|dbj|BAE31509.1| unnamed protein product [Mus musculus]
          Length = 337

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 77  APRLMITHIVNQNFKSYAGEKVLGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 136

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 137 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 165


>gi|50291227|ref|XP_448046.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49527357|emb|CAG60997.1| unnamed protein product [Candida glabrata]
          Length = 1305

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 79/233 (33%), Gaps = 24/233 (10%)

Query: 156  RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
             R    +ERL       L E     +   S+  Q+      I+    +    L +     
Sbjct: 1058 ARLRTQYERLSAQNAGKLGEIRQIQNQIDSLTQQLRSDYKDIDDKYQKEWVELQTRSFAN 1117

Query: 216  VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS------RRTLIGPH 269
               + +     S          +    + +E  K+ + G  +D++         T  G  
Sbjct: 1118 DDIDTYSKALDSAIMKYHSLKMEDINRIIDELWKRTYTGTDIDTIKICSDEVGSTTKGKS 1177

Query: 270  RSDLIVDYCDKA--ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP-ILLLDEISAHL 326
             +  +V Y   A        S G++ +  + I LA    +S T G    ++ LDE + +L
Sbjct: 1178 YNYRVVMYKQDAELDMRGRCSAGQKVLASIIIRLA----LSETFGINCGVIALDEPTTNL 1233

Query: 327  DEDKRNALFRIV--------TDIGSQIFMTGTDKSVFDSLNETA---KFMRIS 368
            DE+   +L + +             Q+ +   D+   + +N  +    F R+ 
Sbjct: 1234 DEENIESLAKSLHNIIEFRKHQKNFQLIVITHDEKFLNHMNAASFTDHFFRVK 1286



 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I  L+I   R++ S     + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  AIYKLSIQGIRSFDSNDRETIEFGKPLTLIVGMNGSGKTTIIECLKYATTG 53


>gi|332187543|ref|ZP_08389280.1| hypothetical protein SUS17_2659 [Sphingomonas sp. S17]
 gi|332012472|gb|EGI54540.1| hypothetical protein SUS17_2659 [Sphingomonas sp. S17]
          Length = 631

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +KI  ++I  FR  +S  LV    H + +GDN  GK+++LEAI  
Sbjct: 1  MKIYAVSIDNFRGISSTTLVL-PDHAVLIGDNNTGKSSVLEAIDL 44


>gi|320169388|gb|EFW46287.1| hypothetical protein CAOG_04255 [Capsaspora owczarzaki ATCC 30864]
          Length = 1193

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYADVT 65
            +++  F  +    + F  Q T   G NG GK+ IL A+     G+     R +S  ++ 
Sbjct: 157 EIDLQNFMCHGRFHMKFSPQFTFVTGVNGSGKSAILCALMVGLGGKTGSTGRGSSIKELI 216

Query: 66  RIGSPSFFSTF 76
           + G+       
Sbjct: 217 KTGADRAVVRI 227


>gi|238762780|ref|ZP_04623749.1| DNA repair protein recN [Yersinia kristensenii ATCC 33638]
 gi|238699085|gb|EEP91833.1| DNA repair protein recN [Yersinia kristensenii ATCC 33638]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 79/277 (28%), Gaps = 34/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAIDALGLCLGSRS-----DGSMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E           L        R    IN   V +  
Sbjct: 57  LGATRADICARFSLADTPSARQWLENNHLDDSNECLLRRAIGTDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           + EL +HL       +   +       +++ LD                +      R + 
Sbjct: 117 LRELGQHLIQIHGQHAHQLLLK--PDHQKQLLDAYAGQSTLLAEMKAAYQSWHQSCRALA 174

Query: 168 -------GRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKE 219
                   RN      ++     +S   Q  E   + +   R+     L SL  + +Q  
Sbjct: 175 LHQQQSLERNARHELLHYQLKELNSFAPQAGEYEQIDVEYKRLANSGQLLSLSQQTLQLL 234

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +       L+     K   +  A  +E    L +  +
Sbjct: 235 SDDEHNNILSQLYSAKSQLTELAGMDEQFNNLLNMLE 271


>gi|224060949|ref|XP_002194869.1| PREDICTED: structural maintenance of chromosomes 4 [Taeniopygia
           guttata]
          Length = 1570

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+NI++++ F+   R    R
Sbjct: 337 APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNIIDSLLFVFGYRAQKIR 396

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 397 SKKLSVLIHTSDEHENIQSCSVEVHFQKI 425


>gi|220912610|ref|YP_002487919.1| ABC transporter [Arthrobacter chlorophenolicus A6]
 gi|219859488|gb|ACL39830.1| ABC transporter related [Arthrobacter chlorophenolicus A6]
          Length = 248

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE++++ +   LA             +L+LDE S  LD   R  L   +  +G Q+ M
Sbjct: 142 SGGERQLMALAAVLAV---------EPAVLVLDEPSTLLDLRNRELLGHTLAGLGQQVIM 192

Query: 348 TGTDKSVFDSLNETAKFMRISNHQA 372
           +  D  +   ++   + + I N   
Sbjct: 193 STHDLELALDMD---RVLVIENGTV 214


>gi|86750096|ref|YP_486592.1| hypothetical protein RPB_2979 [Rhodopseudomonas palustris HaA2]
 gi|86573124|gb|ABD07681.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 464

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +  L +  F+++ +  +      T   G N  GK++I   I FL   +  + +    +
Sbjct: 2  LTHLKLQNFKSWRNANIALAP-LTALYGANSSGKSSI---IQFLLMLKQTKDSQDRSL 55


>gi|47123398|gb|AAH70161.1| SMC4 protein [Homo sapiens]
          Length = 459

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|62020536|gb|AAH01557.1| SMC4 protein [Homo sapiens]
 gi|76780203|gb|AAI06034.1| SMC4 protein [Homo sapiens]
          Length = 459

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|163849209|ref|YP_001637253.1| cobalt ABC transporter ATPase subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222527187|ref|YP_002571658.1| cobalt ABC transporter ATPase subunit [Chloroflexus sp. Y-400-fl]
 gi|163670498|gb|ABY36864.1| cobalt ABC transporter, ATPase subunit [Chloroflexus aurantiacus
           J-10-fl]
 gi|222451066|gb|ACM55332.1| cobalt ABC transporter, ATPase subunit [Chloroflexus sp. Y-400-fl]
          Length = 232

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G++K V +   LA             IL LDE SA LD   R  L  ++  +   + +
Sbjct: 137 SLGQRKRVALATVLAM---------QPAILALDEPSAGLDPRARRELIELLHALPQTMII 187

Query: 348 TGTDKSVFDSLNETAKFMRISNHQAL 373
              D  +   L   A  M  ++ Q +
Sbjct: 188 ATHDLDLVADLAPRAIVM--ADGQIV 211


>gi|326332586|ref|ZP_08198854.1| hypothetical protein NBCG_04030 [Nocardioidaceae bacterium
          Broad-1]
 gi|325949587|gb|EGD41659.1| hypothetical protein NBCG_04030 [Nocardioidaceae bacterium
          Broad-1]
          Length = 635

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +++  + I+ FR  A      D   T FVG N  GKT +L+A+++ + G
Sbjct: 1  MRVSRVEITGFRRLARTGTSIDGPLTAFVGFNEAGKTTLLDALTWFTDG 49


>gi|322434427|ref|YP_004216639.1| hypothetical protein AciX9_0790 [Acidobacterium sp. MP5ACTX9]
 gi|321162154|gb|ADW67859.1| hypothetical protein AciX9_0790 [Acidobacterium sp. MP5ACTX9]
          Length = 659

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K+    I  FR+      +  +   T+ VG N  GKT  L+A+
Sbjct: 1  MKLIKARIINFRSIEDSNDVQIEPTVTVLVGQNDSGKTGFLQAL 44


>gi|218886043|ref|YP_002435364.1| ABC transporter [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756997|gb|ACL07896.1| ABC transporter related [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 562

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 16/89 (17%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN---ALFRIVTDIGSQ 344
           STG+ + VL+   LA         G   +LLLDE  + LD   R    AL   +   G Q
Sbjct: 469 STGQLRRVLLARALA---------GAPDLLLLDEPCSGLDPASRAGFLALLGQLARAGVQ 519

Query: 345 -IFMTGTDKSVFDSLNETAKFMRISNHQA 372
            + +T  +  +   + E +  +R+++ + 
Sbjct: 520 MVLVTHHEGDL---IPEISHVLRLADGRV 545


>gi|19746449|ref|NP_607585.1| DNA repair and genetic recombination protein [Streptococcus
           pyogenes MGAS8232]
 gi|139473480|ref|YP_001128196.1| DNA repair protein [Streptococcus pyogenes str. Manfredo]
 gi|19748651|gb|AAL98084.1| putative DNA repair and genetic recombination protein
           [Streptococcus pyogenes MGAS8232]
 gi|134271727|emb|CAM29960.1| putative DNA repair protein [Streptococcus pyogenes str. Manfredo]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 34/234 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTEVIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----TRDD---RSVRCLQINDVVIRVV- 113
            G+       FFS  A  E +  L    I +E     R D         +IN  ++ +  
Sbjct: 57  RGANKAEIEGFFSVDATPELVACLESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLAT 116

Query: 114 ---------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                    D   +H +   + P + +           F D+    +   ++     ++ 
Sbjct: 117 LKQVGQFLVDIHGQHDQEELMRPQLHQQILDA------FGDKAFEQLKENYQLIFDRYKS 170

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQ 217
           L R                  +  Q+AE+    ++    + +N     +M + Q
Sbjct: 171 LRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQ 224


>gi|332300160|ref|YP_004442081.1| hypothetical protein Poras_0970 [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177223|gb|AEE12913.1| hypothetical protein Poras_0970 [Porphyromonas asaccharolytica DSM
           20707]
          Length = 419

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 124/377 (32%), Gaps = 64/377 (16%)

Query: 7   IKFLNISEFRNYASLRL---VFDAQHTIFVGDNGVGKTNILEA----ISFLSPGRGFRRA 59
           I+ ++I++ R+  +L +     +  H +  G NG GKT++LEA    I+ L  G+     
Sbjct: 5   IQSIHINKVRHLHNLDIYIPDDEHPHLLITGKNGSGKTSLLEAIRDHIALLQKGQSLDFL 64

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            Y +  +             + +    D   K E     +    +++++   V  E    
Sbjct: 65  KYDEQIQY----------YAQQLSSCTDPLRKAELEQKLAFWQERLDELYGAVRVEFEDP 114

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
            +I +       I +  +  R   +   +    P  R + +  +         L++    
Sbjct: 115 TQIVFHSSDKLFICAMYAASREVRMLEPLNPTKPTFRDQWLINQGASDQFLNYLSDLKIQ 174

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +          E   +IN   V     L  +  +   K +F +   S     +GK  + 
Sbjct: 175 EALAR--NEHQTEDADRINDWFVSFEALLGKIFGDSGLKLSFNYKDYSFHIETEGKSFK- 231

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           F  L + +A  +                    D+I D                    + +
Sbjct: 232 FNELSDGFAAVI--------------------DIISD--------------------LIL 251

Query: 300 FLAHA-RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFD 356
            ++              I+L+DE+  HL    +  +  ++T +    Q  +T     V +
Sbjct: 252 KMSSISDRTMQLYDIPGIVLIDEVETHLHLSLQRQVMPLLTKVFPNIQFIVTTHSPFVLN 311

Query: 357 SLNETAKFMRISNHQAL 373
           S+  +A    + + + L
Sbjct: 312 SIA-SASVYDLEHQKVL 327


>gi|258591122|emb|CBE67417.1| DNA repair protein recN (Recombination protein N) [NC10 bacterium
          'Dutch sediment']
          Length = 571

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I+ F     LR+ F     +  G+ G GK+ I++A+      RG      A+  R
Sbjct: 2  LRELCITNFALIDELRVEFGPGLNVLTGETGAGKSIIIDALGLALGMRG-----EAEQIR 56

Query: 67 IGSPSFFSTFA 77
           G+       A
Sbjct: 57 TGTDGATVEAA 67


>gi|269792809|ref|YP_003317713.1| SMC domain-containing protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100444|gb|ACZ19431.1| SMC domain protein [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 1134

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 89/267 (33%), Gaps = 30/267 (11%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           + I  + ++ F+++  +  L  +      VG NG GK+NIL+A+ +          R   
Sbjct: 1   MYIGRIGLNGFKSFGGVHELPLEMGMVAIVGPNGSGKSNILDALKWTLGEGSPSRLRINR 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            +D+   GS S   +  A V  +     +S  +  R  +        D V R + EL + 
Sbjct: 61  QSDLLFQGSASLPPAKEAEVSVLFRGDGMSTSISRRVQQDGTTAVFVDGVRRTLAELEEA 120

Query: 120 LRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            R   +                     M RR  L+ ++          +  + +     +
Sbjct: 121 KRRIHMEGDRFAFIGQGEVSEVIQQRPMARRMLLESLLG---------IDFYRKRRNESS 171

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINI--ARVEMINALSSLIMEYVQKENFPHIKLSL 228
             L E   D     +   +++    +I+    R      + S +    +   +       
Sbjct: 172 DRLKEVSEDLGRLMAFYGELSSRRREISQEVERARRAREIQSELEGLHRDHYWWR----- 226

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGR 255
              L+ +  +   AL+   A++    R
Sbjct: 227 RSSLEARLSEVRSALESLTAQREMRAR 253


>gi|237808349|ref|YP_002892789.1| SMC domain-containing protein [Tolumonas auensis DSM 9187]
 gi|237500610|gb|ACQ93203.1| SMC domain protein [Tolumonas auensis DSM 9187]
          Length = 680

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFR-----NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K+  +++  +R     N     +      T+  G+NG GKT+IL A  +   G
Sbjct: 1  MKLINISLINYRQFFGENTLKFSVDPKQNITVIHGENGAGKTSILNAFKWCFYG 54


>gi|118594559|ref|ZP_01551906.1| DNA repair protein RecN [Methylophilales bacterium HTCC2181]
 gi|118440337|gb|EAV46964.1| DNA repair protein RecN [Methylophilales bacterium HTCC2181]
          Length = 551

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 88/290 (30%), Gaps = 48/290 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  F     L L F    +   G+ G GK+ +++A   LS   G R  +   + R
Sbjct: 2   LESLVIKNFVIVDHLELNFLPGFSSLTGETGAGKSILIDA---LSICLGQRAGTD--LIR 56

Query: 67  IGSP-------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--IR 111
            G               +   ++     ++    + ++     D   +   IN     + 
Sbjct: 57  KGEDKSDITSTFTIDNNAQAISWMHENAIDHDGSLIVRRIINIDGKSKAF-INGTPSSVS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL-------SMERRRFLDRMVFAIDPRHRRRMIDFER 164
            + EL++ L   +   S   +           S  R + L   V          + ++E 
Sbjct: 116 QLKELSEFLVDIYSQNSHHSLLKPSTQKEILDSFARSQNLASEVKNAYSVWVALLKEYEA 175

Query: 165 LMRGRNRLL----------TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL--I 212
             + R   +           +    +      E   AE   K+     E+I        +
Sbjct: 176 FAKNRESFINELEELEEKYKDFNALNFSLDGWEQLKAEH--KVLNNSAELIAGTQQCLDL 233

Query: 213 MEYVQKENFPHIKLSLTGF------LDGKFDQSFCALKEEYAKKLFDGRK 256
           M+   K +     L+L  +      LD K       L+    + L   R 
Sbjct: 234 MDNTDKSSINEKILTLKNYLSSLTKLDVKLAGKVTTLEGSALELLELSRD 283


>gi|71001526|ref|XP_755444.1| nuclear condensin complex subunit Smc2 [Aspergillus fumigatus
           Af293]
 gi|66853082|gb|EAL93406.1| nuclear condensin complex subunit Smc2, putative [Aspergillus
           fumigatus Af293]
 gi|159129514|gb|EDP54628.1| nuclear condensin complex subunit Smc2, putative [Aspergillus
           fumigatus A1163]
          Length = 1179

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 17/125 (13%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           +++  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRVTEIVIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L    
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDTAKSPIGFEEYATISVTRQIVLGGTSKYLINGH 120

Query: 108 VVIRV 112
              + 
Sbjct: 121 RAQQQ 125


>gi|330986169|gb|EGH84272.1| chromosome segregation protein SMC [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 1013

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 103/322 (31%), Gaps = 50/322 (15%)

Query: 10  LNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYADVT 65
           + ++ F+++     + F +     VG NG GK+NI++A+ ++   S  +  R  S  DV 
Sbjct: 2   IKLAGFKSFVDPTTVNFPSNMAAVVGPNGCGKSNIIDAVRWVMGESSAKNLRGESMTDVI 61

Query: 66  RIGSPSF-----FSTFARVEGMEGL--------ADISIKLETRDDRSVRCLQINDVVIRV 112
             GS S       S     +  +G         A+ISI+ +   D       +N    R 
Sbjct: 62  FNGSTSRKPVSQASIELVFDNSDGTLVGEYAAYAEISIRRKVTRDSQN-SYYLNGTKCRR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
            D +      + L P    I               + R F++             +  ++
Sbjct: 121 RD-ITDIFLGTGLGPRSYSIIEQGMISKLIEAKPEDLRNFIEE---------AAGISKYK 170

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
              R     +   + + +  + +  ++     +++               E   K     
Sbjct: 171 ERRRETENRIRRTHENLARLTDLREELERQLERLHRQAQAAEKYQEYKAEERQLKAQLSA 230

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC----- 278
           ++      L G+ +      +  +   + D R  D+   R   G H  DL   +      
Sbjct: 231 LRWQALNDLVGQREAVIGNQEIGFEALVADQRSADASIERLRDGHH--DLSERFNLVQGR 288

Query: 279 ----DKAITIAHGS--TGEQKV 294
                  I     S   G+Q++
Sbjct: 289 FYSVGGDIARVEQSIQHGQQRL 310


>gi|329728345|gb|EGG64782.1| RecF/RecN/SMC N-terminal domain protein [Staphylococcus aureus
          subsp. aureus 21189]
          Length = 174

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAV 63


>gi|315605444|ref|ZP_07880484.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180
          str. F0310]
 gi|315312851|gb|EFU60928.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180
          str. F0310]
          Length = 383

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          ++   + I  ++N+  L      +    VG N  GK+N+L+   FL 
Sbjct: 1  MEFSHVRIRNWKNFRDLSFDVGHRL-FIVGPNAAGKSNLLDVFRFLG 46


>gi|313886395|ref|ZP_07820118.1| conserved hypothetical protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924171|gb|EFR34957.1| conserved hypothetical protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 419

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 58/377 (15%), Positives = 124/377 (32%), Gaps = 64/377 (16%)

Query: 7   IKFLNISEFRNYASLRL---VFDAQHTIFVGDNGVGKTNILEA----ISFLSPGRGFRRA 59
           I+ ++I++ R+  +L +     +  H +  G NG GKT++LEA    I+ L  G+     
Sbjct: 5   IQSIHINKVRHLHNLDIYIPDDEHPHLLITGKNGSGKTSLLEAIRDHIALLQKGQSLDFL 64

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            Y +  +             + +    D   K E     +    +++++   V  E    
Sbjct: 65  KYDEQIQY----------YAQQLSSCTDPLRKAELEQKLAFWQERLDELYGAVRVEFEDP 114

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
            +I +       I +  +  R   +   +    P  R + +  +         L++    
Sbjct: 115 TQIVFHSSDKLFICAMYAASREVRMLEPLNPTKPTFRDQWLINQGASDQFLNYLSDLKIQ 174

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
            +          E   +IN   V     L  +  +   K +F +   S     +GK  + 
Sbjct: 175 EALAR--NEHQTEDADRINDWFVSFEALLGEIFGDSGLKLSFNYKDYSFHIETEGKSFK- 231

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
           F  L + +A  +                    D+I D                    + +
Sbjct: 232 FNELSDGFAAVI--------------------DIISD--------------------LIL 251

Query: 300 FLAHA-RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFD 356
            ++              I+L+DE+  HL    +  +  ++T +    Q  +T     V +
Sbjct: 252 KMSSISDRTMQLYDIPGIVLIDEVETHLHLSLQRQVMPLLTKVFPNIQFIVTTHSPFVLN 311

Query: 357 SLNETAKFMRISNHQAL 373
           S+  +A    + + + L
Sbjct: 312 SIA-SASVYDLEHQKVL 327


>gi|262280746|ref|ZP_06058529.1| DNA repair protein RecN [Acinetobacter calcoaceticus RUH2202]
 gi|262257646|gb|EEY76381.1| DNA repair protein RecN [Acinetobacter calcoaceticus RUH2202]
          Length = 555

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 94/282 (33%), Gaps = 49/282 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQINDVV- 109
            GS     T                   ++   G   +   +            +N    
Sbjct: 57  YGSDKADITAVFTYQNNSPEEKWLQEHELDDDSGEIHLRRVIFATGRSK---AWVNGRPS 113

Query: 110 -IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH------RRRMIDF 162
            +  + EL + L   +   S  ++        + +LDR     +  +      R     +
Sbjct: 114 SLSELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDR----YNNFYVEANDVREAYSMW 167

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           +R +R     L           ++E Q+ EL  ++     + I        E+ +  +  
Sbjct: 168 QRTIRLHQAALDAQATRLQRIGTLEHQIEEL-EEVVQTDYKEIE------QEFDRLSHHE 220

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
           HI    +  L+   D++   + +E +  +   R+++S + R+
Sbjct: 221 HIMQDCSYSLNV-LDEAEQNITQEMSSII---RRLESHAGRS 258


>gi|257875401|ref|ZP_05655054.1| DNA repair protein RecN [Enterococcus casseliflavus EC20]
 gi|257809567|gb|EEV38387.1| DNA repair protein RecN [Enterococcus casseliflavus EC20]
          Length = 557

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 98/297 (32%), Gaps = 51/297 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F   ++L L F    T   G+ G GK+ I++A+  L+  RG      +D  R
Sbjct: 2   LLELSIQNFAIISNLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGSRG-----SSDYLR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE---------TRDDRSVRCLQINDVVIRV 112
            G+        F    + E  E  AD+ I  E         ++  +++  +    V + V
Sbjct: 57  QGAEKCRLEGIFEWPNQQEFKELTADLGIDEEEVLIVQRDISQSGKTICRVNGRTVTLSV 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRR----FLDRMVFAIDPRHRRRMIDFERLMR- 167
           + ++   L           +      +       F D    A    +R+    +  L + 
Sbjct: 117 LRQIGLFLVDIQGQNEHQELLQ--PEKHLALMDGFGDDAFKAELANYRQAYQAYRSLEKH 174

Query: 168 ------------GRNRLLTEGY---FDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
                        R  +L         +    + E Q+ +   K+     ++++AL    
Sbjct: 175 VRTIQENEQLYVQRMDMLRFQQEEIAQAELMENEEEQLIDEREKLTN-YQKIVDALGQSY 233

Query: 213 MEYVQKE-------NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
                +E       +    ++     LD  +++   A++  Y   L      D   +
Sbjct: 234 GALSAEEVNSLDGVSVALSEIQSIAHLDPAYEKISEAIQSAYY--LLQDAATDISRQ 288


>gi|150402809|ref|YP_001330103.1| hypothetical protein MmarC7_0885 [Methanococcus maripaludis C7]
 gi|150033839|gb|ABR65952.1| hypothetical protein MmarC7_0885 [Methanococcus maripaludis C7]
          Length = 670

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 4  RI-KIKFLNISEFRNYASL-RLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ K+  L I  +++      +       T+  G N  GKT+ILEA++  + G  
Sbjct: 11 KMIKLTKLRIKNYKSIKDSGDIFLSSDGITVLAGMNESGKTSILEALNDFNVGNS 65


>gi|119897785|ref|YP_932998.1| hypothetical protein azo1494 [Azoarcus sp. BH72]
 gi|119670198|emb|CAL94111.1| conserved hypothetical protein [Azoarcus sp. BH72]
          Length = 930

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 31/74 (41%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           IK L +  +  +    L  DAQ    VG NG GKT +L+A+  L   R   +  +    
Sbjct: 3  HIKTLELVHWDYWRRFTLPLDAQIITIVGPNGSGKTTLLDAMRTLFALRCSGKRDFRRYV 62

Query: 66 RIGSPSFFSTFARV 79
          R    SF    A V
Sbjct: 63 RRADRSFAWIRAVV 76



 Score = 40.3 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 91/300 (30%), Gaps = 46/300 (15%)

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDD-------RSVRCLQINDVVIRVVDELN---- 117
           +    +  A  E  E L  + I+L+ R+        R     + N    R   E      
Sbjct: 619 AERAATRGALDEVAEKLRGVEIELDRRNRELKNIELRLADIARDNAPRRRAQAERILKLR 678

Query: 118 ---KHLRISWLVPSMDRIF---SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
              + +   WL  +   +     G +   R  LDR+   +D       +    ++  R+R
Sbjct: 679 RRRRGMPAHWLDSAELALLVEKYGDARSARLQLDRLRRHLDEG---DWVTDGTVLTLRDR 735

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLT 229
           L T+           +A  A      + AR   I  L + + +Y +  K       L + 
Sbjct: 736 LTTDLAGRERDYGDRQAYCATARRHTDEARAAYIAKLRATVRQYGKNLKALGELANLDVD 795

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
                  +      +     +    RK                         +     S 
Sbjct: 796 CPAPHLDNDDLSLAQAGLEVRFDFDRK---------------------GAVGLNDGEASG 834

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           G+Q +  + + +A   L+ +       + +DE  AHLD    + +   +    +Q  +T 
Sbjct: 835 GQQVMKSLILLVA---LLMDDARPGGFVFIDEPFAHLDVANIDRVGTFLRATRAQYLITT 891


>gi|50311811|ref|XP_455936.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49645072|emb|CAG98644.1| KLLA0F19085p [Kluyveromyces lactis]
          Length = 1372

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 11/119 (9%)

Query: 2   TNRIKIKFLNISEFRNYAS-LRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
           + R+ I  L ++ F++YA    +  F    +  VG NG GK+N+++++ F+   R    R
Sbjct: 120 SQRLCIDKLVLNNFKSYAGIQEIGPFHTSFSAVVGPNGSGKSNVIDSMLFVFGFRANKMR 179

Query: 58  RASYADVT----RIGSPSFFSTFARVEGMEGLADISIKLETRDDR---SVRCLQINDVV 109
           +   +++     +  S +  S       +    +   K+           R  + N   
Sbjct: 180 QGKLSELIHKSEQFPSLASCSVQIHFHYVHDTDNGETKILPSAGTMVVERRAFKNNSSK 238


>gi|71983162|gb|AAZ57431.1| structural maintenance of chromosome 2 [Toxoplasma gondii]
          Length = 1186

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 4  RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RR 58
          ++ I+ + +  F++Y++         Q     G NG GK+NIL++I F+         R 
Sbjct: 23 KMYIEAIVLEGFKSYSNRVYVGPLHPQFNAVTGLNGTGKSNILDSICFVLGITNHALVRA 82

Query: 59 ASYADVT 65
              D+ 
Sbjct: 83 TKLDDLV 89


>gi|307073978|gb|ADN26583.1| DNA phosphorothioation protein DptD [Salmonella enterica subsp.
           enterica serovar Cerro]
          Length = 683

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 75/232 (32%), Gaps = 31/232 (13%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           +     +R ++ D E+ +      +     D      + A + +L  K    R +  + L
Sbjct: 414 WQRFDMYRHQLADIEQQLEQAAANIARAPEDEQLMD-LFAALRDLDHKREKQRQKYRSLL 472

Query: 209 SSLIMEYVQKEN-------FPHIKLSLTGFLDG-KFDQSFCALKEEYAKKLFDGR----- 255
                   Q+ +          I  S  G     K  Q    L + Y+  L   R     
Sbjct: 473 EEAKRTKQQQLDCVRQVQKAHDITRSQHGLSSAFKNAQETINLLDYYSNVLTQARVKKLS 532

Query: 256 -----------KMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                      + + +     I P   D+ +VD     I     S GE+++  + I    
Sbjct: 533 ANFEIAYHKLARKEDLQLNAHINPQTFDVELVDEKGSVINRKLLSAGEKQIYAIAI---- 588

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
              ++ T+G    +++D     LD   R+ L      +   Q+ +  TD  V
Sbjct: 589 LEALAKTSGRDFPVIIDTPLGRLDSQHRDKLINHYFPEASHQVVLLSTDTEV 640



 Score = 39.5 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPGR 54
          IK L +  FR +  +  +    +            +F G NG GKT+IL AI     GR
Sbjct: 17 IKQLVLHNFRVFCGTHTIDLAPRKRPHEVNPRPIVLFGGLNGAGKTSILSAIRLALYGR 75


>gi|257456301|ref|ZP_05621498.1| putative ATP-binding protein [Treponema vincentii ATCC 35580]
 gi|257446387|gb|EEV21433.1| putative ATP-binding protein [Treponema vincentii ATCC 35580]
          Length = 122

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 28 QHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYADVTRI 67
          +     G N  GKTNILEA+ F +      F R    +V   
Sbjct: 45 KMACIYGANASGKTNILEALRFYAYFMLSSFTRLKPDEVINF 86


>gi|190341695|gb|ACE74924.1| RecN [Cronobacter turicensis]
 gi|190341697|gb|ACE74925.1| RecN [Cronobacter turicensis]
 gi|190341699|gb|ACE74926.1| RecN [Cronobacter turicensis]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQAGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|167904485|ref|ZP_02491690.1| putative GTP-binding protein [Burkholderia pseudomallei NCTC 13177]
          Length = 882

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 95/310 (30%), Gaps = 55/310 (17%)

Query: 5   IKIKFLNISEFRNYAS-LRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +K+  L I + R +    ++        +FVG N  GK+ I EAI      R  R +S  
Sbjct: 3   MKLSRLRIEQLRKFRQPAQIGDLADGINLFVGPNEAGKSTIAEAIRAAFFER-HRSSSVE 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV---IRVVDELNKH 119
            +   G     S    ++   G     +  ++   R    L+IN      ++  D L   
Sbjct: 62  HLRPWG-DGAASPSIEIDFTVGGRSARLH-KSFLQRKRCELEINGQRLEGVQAEDHLADL 119

Query: 120 LRI-----------SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID------- 161
           L              W +P +  I  G + +    +      +       + +       
Sbjct: 120 LGFGFAGRGASGPEHWGIPGLLWIEQGAAQDIDAPVAHAAEHLQRALGAALGEVASSSGD 179

Query: 162 --FERLMRGRNRLL---------------TEGYFDSSWCSSIEAQMAELGVKI----NIA 200
              +R+ R RN LL                     ++  + +E Q+A    K+     + 
Sbjct: 180 VVLDRIERARNELLTPATGQPRGDYAEARRREVTLATELTGLEGQVATYRGKVDQLATLR 239

Query: 201 RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL--------F 252
           R    +           KE    ++L     +           ++   ++         F
Sbjct: 240 RDHAADDTEQPWQALRAKERAAQVELDAVEAVKKSLADVREKAEQTTQRQALLVANLDTF 299

Query: 253 DGRKMDSMSR 262
           D ++ D  +R
Sbjct: 300 DQQERDLRAR 309


>gi|15675399|ref|NP_269573.1| putative DNA repair and genetic recombination protein
           [Streptococcus pyogenes M1 GAS]
 gi|71911041|ref|YP_282591.1| DNA repair protein [Streptococcus pyogenes MGAS5005]
 gi|13622585|gb|AAK34294.1| putative DNA repair and genetic recombination protein
           [Streptococcus pyogenes M1 GAS]
 gi|71853823|gb|AAZ51846.1| DNA repair protein [Streptococcus pyogenes MGAS5005]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 34/234 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTEVIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----TRDD---RSVRCLQINDVVIRVV- 113
            G+       FFS  A  E +  L    I +E     R D         +IN  ++ +  
Sbjct: 57  RGANKAEIEGFFSVDATPELVACLESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLAT 116

Query: 114 ---------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                    D   +H +   + P + +           F D+    +   ++     ++ 
Sbjct: 117 LKQVGQFLVDIHGQHDQEELMRPQLHQQILDA------FGDKAFEQLKENYQLIFDRYKS 170

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQ 217
           L R                  +  Q+AE+    ++    + +N     +M + Q
Sbjct: 171 LRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQ 224


>gi|56808393|ref|ZP_00366145.1| COG0497: ATPase involved in DNA repair [Streptococcus pyogenes M49
           591]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 34/234 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTEVIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----TRDD---RSVRCLQINDVVIRVV- 113
            G+       FFS  A  E +  L    I +E     R D         +IN  ++ +  
Sbjct: 57  RGANKAEIEGFFSVDATPELVACLESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLAT 116

Query: 114 ---------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                    D   +H +   + P + +           F D+    +   ++     ++ 
Sbjct: 117 LKQVGQFLVDIHGQHDQEELMRPQLHQQILDA------FGDKAFEQLKENYQLIFDRYKS 170

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQ 217
           L R                  +  Q+AE+    ++    + +N     +M + Q
Sbjct: 171 LRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQ 224


>gi|328770039|gb|EGF80081.1| hypothetical protein BATDEDRAFT_88502 [Batrachochytrium
          dendrobatidis JAM81]
          Length = 1192

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F++Y    +   F   H   VG NG GK+N   AI F
Sbjct: 1  MYIKQIVIQGFKSYKEQTVIEPFSPAHNSVVGRNGSGKSNFFWAIRF 47



 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 98/277 (35%), Gaps = 15/277 (5%)

Query: 92   LETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL-----SMERRRFLDR 146
            +E +  +  + +    ++++  D+   ++R   ++P    +          +++   ++ 
Sbjct: 893  IELQQRKMEKFMTRRALLLKKKDDALGNIRDLGVLPDEAFVKYKGINTKTLVKKLHQVNE 952

Query: 147  MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
             +      +R+    +      + +L            +IE  +  L  + + A  +   
Sbjct: 953  ALKLFGHVNRKAFEQYNNFAMQKEQLQERKEELDQSHQAIEDLIRVLDQRKDDAIEQTFK 1012

Query: 207  ALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
             ++    +  +K        L +    D  FD       +       D  +  ++ + T 
Sbjct: 1013 QVAQNFSDIWEKIVPSGQGHLIMLRRSDEAFDGMEATQDDSLQPGRRDTLRDSAIEQYTG 1072

Query: 266  IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
            +  + S       D+ + +   S G++ +V + +  A        +  AP  L DEI A 
Sbjct: 1073 VAINVS--FSSKTDEGLRMPQLSGGQKSLVALTLIFA-----IQRSDPAPFYLFDEIDAA 1125

Query: 326  LDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNE 360
            LD   R A+  +V ++   +Q   T     + +  ++
Sbjct: 1126 LDAQYRTAIADMVHELSEHAQFITTTFRPELLEHTDK 1162


>gi|322411789|gb|EFY02697.1| DNA helicase associated protein [Streptococcus dysgalactiae
          subsp. dysgalactiae ATCC 27957]
          Length = 689

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 29/46 (63%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  + I+ FR++   +++     T+ +G+N  GKT +L+A+S L
Sbjct: 1  MKLTKVIINNFRSFGESQIIELNNQTVLIGNNSSGKTTVLQALSKL 46


>gi|313112697|ref|ZP_07798349.1| hypothetical protein HMPREF9436_00189 [Faecalibacterium cf.
          prausnitzii KLE1255]
 gi|310624987|gb|EFQ08290.1| hypothetical protein HMPREF9436_00189 [Faecalibacterium cf.
          prausnitzii KLE1255]
          Length = 1097

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          +K L +  + N+ ++     A+ T  +G N VGKT IL+AI   L+  R F
Sbjct: 4  LKRLKLINWHNFENVTFDC-ARLTYMIGVNAVGKTTILDAIRYCLTTNRNF 53


>gi|306845125|ref|ZP_07477705.1| chromosome segregation protein SMC [Brucella sp. BO1]
 gi|306274540|gb|EFM56335.1| chromosome segregation protein SMC [Brucella sp. BO1]
          Length = 1152

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           ++   L +  F+++   +  V +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MRFSKLRLVGFKSFVEPMEFVIEGGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   GS      +       ++  +  A         +++  R +R +    +IN  
Sbjct: 61  MDDVIFSGSATRPARNTAEVTLFLDNSDRTAPPAYNDADELQVSRRIEREAGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR  L+
Sbjct: 121 EARAKDVQLLFADQSTGARSPSMVGQGRIGELIQAKPQARRALLE 165


>gi|55823132|ref|YP_141573.1| DNA repair and genetic recombination protein [Streptococcus
           thermophilus CNRZ1066]
 gi|55739117|gb|AAV62758.1| DNA repair and genetic recombination protein [Streptococcus
           thermophilus CNRZ1066]
          Length = 556

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 93/278 (33%), Gaps = 35/278 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I  F     + L F+   T+  G+ G GK+ I++A++ +   R     + ++V R
Sbjct: 2   LLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGAR-----ASSEVVR 56

Query: 67  IGSP-----SFFST------FARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
             +P      FFS        + +E      +  + +     ++ R + +IN  ++ +  
Sbjct: 57  HSAPKAEIQGFFSIEQNPALVSLLEDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTI 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
                  +  +    D+               F D+  F     ++     +  L +   
Sbjct: 117 LKAVGNFLVDIHGQHDQEELMRPALHINMLDAFGDKDFFQAKKEYQEYFDRYRELRKAVL 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINALS-----SLIMEYV 216
                     +    +  Q+AE+            +   R +++N        +     +
Sbjct: 177 EKQKNEKEHKARIEMLAFQIAEIEAASLKTGEDLALMKERDKLLNHKQIADTLTNAYVML 236

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
             E+F  +    +   D +  + + +  +E +  L + 
Sbjct: 237 DNEDFSSLSNVRSAMNDLQSLEEYDSDYKELSNNLSEA 274


>gi|116627946|ref|YP_820565.1| DNA repair and genetic recombination protein [Streptococcus
           thermophilus LMD-9]
 gi|116101223|gb|ABJ66369.1| ATPase involved in DNA repair [Streptococcus thermophilus LMD-9]
 gi|312278534|gb|ADQ63191.1| ATPase involved in DNA repair [Streptococcus thermophilus ND03]
          Length = 556

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 93/278 (33%), Gaps = 35/278 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I  F     + L F+   T+  G+ G GK+ I++A++ +   R     + ++V R
Sbjct: 2   LLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGAR-----ASSEVVR 56

Query: 67  IGSP-----SFFST------FARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
             +P      FFS        + +E      +  + +     ++ R + +IN  ++ +  
Sbjct: 57  HSAPKAEIQGFFSIEQNPALVSLLEDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTI 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMER----RRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
                  +  +    D+               F D+  F     ++     +  L +   
Sbjct: 117 LKAVGNFLVDIHGQHDQEELMRPALHISMLDAFGDKDFFQAKKEYQEYFDRYRELRKAVL 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMINALS-----SLIMEYV 216
                     +    +  Q+AE+            +   R +++N        +     +
Sbjct: 177 EKQKNEKEHKARIEMLAFQIAEIEAASLKTGEDLALMKERDKLLNHKQIADTLTNAYVML 236

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
             E+F  +    +   D +  + + +  +E +  L + 
Sbjct: 237 DNEDFSSLSNVRSAMNDLQSLEEYDSDYKELSNNLSEA 274


>gi|325295392|ref|YP_004281906.1| DNA repair protein RecN [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325065840|gb|ADY73847.1| DNA repair protein RecN [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 520

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 70/189 (37%), Gaps = 18/189 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +S F +  S  L+F     + +G+ G GK+ +L +I FL   +        +V  
Sbjct: 2   IEELRLSSFGSI-SAELLFSQGFNVIIGETGAGKSLLLSSIEFLKGKKS-------NVVF 53

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  SF      V+G E    I I+ E ++ RS     +N + +       K   +    
Sbjct: 54  EG--SFVEAVFNVQGEE----IFIRREIKNGRS--RYFLNGMRVPQNLVEKKLFSLITFQ 105

Query: 127 PSMDRIFSGLSMERRRFLDRM--VFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                I       + + LD    V  +   +++    + +      +LL E         
Sbjct: 106 SQRQSIELLKPSYQLKLLDVFSIVTPLLKEYKKIYELYRQKETELKKLLDEMSAKDREID 165

Query: 185 SIEAQMAEL 193
            +  Q+ E+
Sbjct: 166 ILRFQIEEI 174


>gi|319784114|ref|YP_004143590.1| ATPase AAA [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170002|gb|ADV13540.1| AAA ATPase [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 260

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 7/49 (14%)

Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS------PGRGFR 57
          FR +    L F    TI VG+NG GK+ +LEAI  L+       G+G+R
Sbjct: 38 FRGH-DFELEFTTPITIIVGENGTGKSTLLEAIGALAGYDEAGGGKGYR 85


>gi|307328946|ref|ZP_07608115.1| DNA repair protein RecN [Streptomyces violaceusniger Tu 4113]
 gi|306885456|gb|EFN16473.1| DNA repair protein RecN [Streptomyces violaceusniger Tu 4113]
          Length = 581

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 65/209 (31%), Gaps = 31/209 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     + A +
Sbjct: 9   MRIRALGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADAAL 58

Query: 65  TRIGSPSF-----FSTFARVEGMEGLADISIKLE----------TRDDRSVRCLQINDVV 109
            RIG+ +       +  AR        +   +LE          + + RS   +    V 
Sbjct: 59  VRIGAKAAVVEGRITVDARSAAAVRAEEAGAELEDGVLLISRTLSAEGRSRAHVGGRSVP 118

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR----HRRRMIDFERL 165
           + ++ EL   L           +       +R+ LDR            +         +
Sbjct: 119 VGLLGELADDLVAVHGQTDQQGLLR--PARQRQALDRYAGDAVAGPLEKYAGAYRRLRAV 176

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
                 L T     +     +   + E+ 
Sbjct: 177 SAEWEELTTRARERAQEADLLRFGLEEVA 205


>gi|194397225|ref|YP_002037963.1| DNA helicase associated protein [Streptococcus pneumoniae G54]
 gi|307127256|ref|YP_003879287.1| Yga2G [Streptococcus pneumoniae 670-6B]
 gi|194356892|gb|ACF55340.1| DNA helicase associated protein [Streptococcus pneumoniae G54]
 gi|306484318|gb|ADM91187.1| Yga2G [Streptococcus pneumoniae 670-6B]
 gi|319412010|emb|CBY91943.1| DNA helicase associated protein [Streptococcus pneumoniae]
          Length = 689

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 29/46 (63%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  + I+ FR++   +++     T+ +G+N  GKT +L+A+S L
Sbjct: 1  MKLTKVIINNFRSFGESQIIELNNQTVLIGNNSSGKTTVLQALSKL 46


>gi|170748765|ref|YP_001755025.1| DNA repair protein RecN [Methylobacterium radiotolerans JCM 2831]
 gi|170655287|gb|ACB24342.1| DNA repair protein RecN [Methylobacterium radiotolerans JCM 2831]
          Length = 557

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 76/249 (30%), Gaps = 37/249 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ I+ + + +      L L F +  ++  G+ G GK+ +L+A +    GRG     
Sbjct: 1   MLAQLAIRDIVLID-----RLELNFRSGLSVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61  YADVTRIGSPSFFSTF---------ARVEGMEGLADIS---IKLETRDDRSVRCLQINDV 108
              + R G      T          AR    E   D     I   T+         +ND 
Sbjct: 51  DGRLVRHGEAQGAVTAVFDLPLDHPARRIAAEAEIDTEGDLILRRTQMADGRTRAFVNDQ 110

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
            + V         +  +    D          R  LD     +  +  +       +   
Sbjct: 111 PVGVQVLRAIGAALVEIHGQHDDRALADPASHRAILD-AFGGLQSQLAKVAAASRAVRTA 169

Query: 169 RNRLLTE------GYFDSSWCSSIEAQMAELG------VKINIAR--VEMINALSSLIME 214
           R  L            +S +      ++A L        ++   R  ++    ++  + E
Sbjct: 170 RTELAEHRARVEAARKESDFLRHAVEELAALAPLAGEEAQLAERRTIMQQSEKVARELNE 229

Query: 215 YVQKENFPH 223
            ++    PH
Sbjct: 230 ALEAVGGPH 238


>gi|73980575|ref|XP_532882.2| PREDICTED: similar to SMC6 protein [Canis familiaris]
          Length = 1606

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 18/100 (18%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 563 IESIQLRNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLK 622

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
              + G  S              ADISI L  R D + R 
Sbjct: 623 GFVKDGQNS--------------ADISITLRNRGDDAYRA 648


>gi|134294816|ref|YP_001118551.1| Fis family transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137973|gb|ABO53716.1| DNA replication and repair protein RecN [Burkholderia vietnamiensis
           G4]
          Length = 549

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 17/126 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD   T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDGGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            G                   ++     A+ ++ L    D + R    IN     +  + 
Sbjct: 57  AGCGRADITAEFTPHDRVARWLDEHAFDAEDTVMLRRVIDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHL 120
           EL + L
Sbjct: 117 ELGEML 122


>gi|125973676|ref|YP_001037586.1| hypothetical protein Cthe_1161 [Clostridium thermocellum ATCC
           27405]
 gi|125713901|gb|ABN52393.1| hypothetical protein Cthe_1161 [Clostridium thermocellum ATCC
           27405]
          Length = 800

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 60/146 (41%), Gaps = 12/146 (8%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYADV 64
           +K +NI   R    +  +  + +  I  G+NG GK++I++ I +   G      ++  +V
Sbjct: 2   LKSINIENLRGIRFNTNIDLNKKSLIIFGENGKGKSSIVDGIEYAITGDIKHISSTCREV 61

Query: 65  -TRIGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLRI 122
             +  +P  ++ F  ++     +D S+    ++ ++     +I +  +  ++ L +    
Sbjct: 62  SLKKHAPHIYADFQEIKVEVEFSDGSVLSNYKEPEKGTLAYRIRNSKLGNINILRR---- 117

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMV 148
                 +    S    ER   L + +
Sbjct: 118 ----SQLLDAISAQPKERYDLLKQFL 139


>gi|332799247|ref|YP_004460746.1| SMC domain-containing protein [Tepidanaerobacter sp. Re1]
 gi|332696982|gb|AEE91439.1| SMC domain protein [Tepidanaerobacter sp. Re1]
          Length = 480

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          IK L +  F+++   ++ FD   T+ +G    GK+ I+ A+
Sbjct: 4  IKSLKLKNFQSHKESQIDFDEGLTVILGQTDQGKSAIIRAL 44


>gi|303251968|ref|ZP_07338139.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 2 str. 4226]
 gi|302649398|gb|EFL79583.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 2 str. 4226]
          Length = 519

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ + IS FR    L L       + +G+N  GK+++L+A+S +
Sbjct: 1  MYLQQIEISGFRGINHLSLTLRPNM-VLIGENAWGKSSLLDALSHI 45


>gi|302872030|ref|YP_003840666.1| SMC domain protein [Caldicellulosiruptor obsidiansis OB47]
 gi|302574889|gb|ADL42680.1| SMC domain protein [Caldicellulosiruptor obsidiansis OB47]
          Length = 857

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 92/287 (32%), Gaps = 43/287 (14%)

Query: 5   IKIKFLNISEFRNYASL--RLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFR--RA 59
           ++  FL I  F++Y      + F   +    +G NG GK++I EAI++   G   R    
Sbjct: 1   MRPLFLRIENFKSYKDTQNEIDFSNIKVACIIGKNGNGKSSIAEAIAWALFGEFERLQTG 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ------------IN- 106
               V      +    + +VE    L     K+  R DR  +               IN 
Sbjct: 61  KRGKVAETEYINSHRDYMQVEFEFELNKTIYKVVRRLDRKGKKYLSLFVRKGDSLIPINE 120

Query: 107 ----DVVIRVVDELNKHLRISWLVPSMD-----RIFSGLSMERRRFLDRMVFAIDPRHRR 157
                  +++ + L     +      +              +RR    +++         
Sbjct: 121 ATYTQTQVKLQNILGIDFNVFLHSAYLSQKRTEDFLLSSPEDRREVFAKIL--------- 171

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV---EMINALSSLIME 214
            +  ++R+    N L  E   +      I+ +  E   KI   +     ++  L      
Sbjct: 172 NLSIYDRI----NELAKEKRKEKKVLLDIKNREIEEENKILSEKESIKSLVADLEKKRTT 227

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
              + N    +L+       + +Q    L ++  + +   RK + + 
Sbjct: 228 IEAELNGLRNRLNTLISKRSEIEQKLDILNQKKNEMIELQRKAEEIR 274


>gi|253687128|ref|YP_003016318.1| DNA repair protein RecN [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753706|gb|ACT11782.1| DNA repair protein RecN [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 76/250 (30%), Gaps = 42/250 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  ++  G+ G GK+  ++A+      R       A + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMSVITGETGAGKSIAIDALGLCLGNRS-----DASMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            ++   +  ++     D   R   IN   V + 
Sbjct: 57  PGAARADICARFALADTPTARQWLEENQLDDSNECLLRRVISADGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRIS--------WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            + EL +HL            L P   +       +  + L   +  +  +         
Sbjct: 116 QLRELGQHLIQVHGQHAHQLLLRPDHQKHLLDAYADEPKLL-VAMQQVWHQ----WHQSC 170

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK--------INIARVEMINALSSLIMEY 215
           R +    +   E             ++ E   +        +   R+     L ++  + 
Sbjct: 171 RALAQLQQAAIEREARRELLQYQLKELNEFAPQPGEYEQIDVEYKRLANSGQLLTMSQQA 230

Query: 216 VQKENFPHIK 225
           +Q  +    +
Sbjct: 231 MQLLSEDEEQ 240


>gi|169775035|ref|XP_001821985.1| structural maintenance of chromosomes protein 2 [Aspergillus oryzae
           RIB40]
 gi|83769848|dbj|BAE59983.1| unnamed protein product [Aspergillus oryzae]
          Length = 1179

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRITEVVIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A+IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDTAKSPIGFEEYANISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|56710334|ref|NP_989847.1| SMC1 protein cohesin subunit [Gallus gallus]
 gi|29837126|emb|CAD58850.2| SMC1 protein cohesin subunit [Gallus gallus]
          Length = 1234

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYAD 63
          +K + I  F++Y     +    + T  +  NG GK+N+++AISF+   +    R  +  D
Sbjct: 4  LKLIEIENFKSYKGRQIIGPFRRFTAIIVPNGSGKSNLMDAISFVLGEKTSNLRVKALRD 63

Query: 64 VTRIGSP 70
          +   G+P
Sbjct: 64 LI-HGAP 69


>gi|307129571|ref|YP_003881587.1| putative ATPase involved in DNA repair [Dickeya dadantii 3937]
 gi|306527100|gb|ADM97030.1| Possible ATPase involved in DNA repair [Dickeya dadantii 3937]
          Length = 683

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 69/232 (29%), Gaps = 31/232 (13%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           +     +R +++D E+ +      +     D      + A + +L  K    R +    L
Sbjct: 414 WQRFDMYRHQLVDIEQQLEQAAANIARAPEDEQLMD-LFAALRDLDHKREKQRQKYRALL 472

Query: 209 SSLIM------------EYVQKENFPHIKLS------------LTGFLDGKFDQSFCALK 244
                            +           LS            L  + D         L 
Sbjct: 473 EEAKRTKQQQLDCVRQVQKAHDITRSQHGLSSAFKNAQETINLLDYYSDVLTQARVKKLS 532

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +        + + +     I P   D+ +VD     I     S GE+++  + I    
Sbjct: 533 ANFEIAYHKLARKEDLQLNAHINPQTFDVELVDEKGSVINRKLLSAGEKQIYAIAI---- 588

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
              ++ T+G    +++D     LD   R+ L      +   Q+ +  TD  V
Sbjct: 589 LEALAKTSGRDFPVIIDTPLGRLDSQHRDKLINHYFPEASHQVVLLSTDTEV 640



 Score = 39.5 bits (91), Expect = 0.81,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPGR 54
          IK L +  FR +  +  +    +            +F G NG GKT+IL AI     GR
Sbjct: 17 IKQLVLHNFRVFCGTHTIDLAPRKRPHEVNPRPIVLFGGLNGAGKTSILSAIRLALYGR 75


>gi|299144064|ref|ZP_07037144.1| putative exonuclease SBCC [Peptoniphilus sp. oral taxon 386 str.
          F0131]
 gi|298518549|gb|EFI42288.1| putative exonuclease SBCC [Peptoniphilus sp. oral taxon 386 str.
          F0131]
          Length = 434

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          I  + +  F+++ +  + F     + +G++  GKT IL AI
Sbjct: 4  ITKVELINFQSHENTVIDFHRGLNVILGNSDSGKTAILRAI 44


>gi|190341701|gb|ACE74927.1| RecN [Cronobacter turicensis]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQAGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|222529589|ref|YP_002573471.1| hypothetical protein Athe_1604 [Caldicellulosiruptor bescii DSM
          6725]
 gi|312127362|ref|YP_003992236.1| hypothetical protein Calhy_1146 [Caldicellulosiruptor
          hydrothermalis 108]
 gi|222456436|gb|ACM60698.1| conserved hypothetical protein [Caldicellulosiruptor bescii DSM
          6725]
 gi|311777381|gb|ADQ06867.1| conserved hypothetical protein [Caldicellulosiruptor
          hydrothermalis 108]
          Length = 685

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + I  + I  FR +      + FD + T  +G N  GKT +L A+
Sbjct: 1  MYIDKIKIRNFRCFGPEETVIEFD-KLTALIGANSCGKTAVLHAL 44


>gi|119509850|ref|ZP_01628993.1| hypothetical protein N9414_11614 [Nodularia spumigena CCY9414]
 gi|119465459|gb|EAW46353.1| hypothetical protein N9414_11614 [Nodularia spumigena CCY9414]
          Length = 418

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 12/83 (14%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
          K + +  F+ +    +      T+ +G+N  GK+N+L  I                + R 
Sbjct: 3  KQVTLKNFKTHKLTTVELHP-VTLLIGNNNSGKSNLLTGIQHFC-----------RLVRR 50

Query: 68 GSPSFFSTFARVEGMEGLADISI 90
          G P   +    V          +
Sbjct: 51 GRPGNINKTVNVHRDLYPHRYRL 73


>gi|33240152|ref|NP_875094.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|33237679|gb|AAP99746.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 904

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +++    I   + +  L + F  + T+  G N  GK+ ++EAI 
Sbjct: 1  MRLVKCQIKNVKTHDDLTVNFSPKITLIGGRNETGKSTLIEAIH 44



 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 57/144 (39%), Gaps = 7/144 (4%)

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           +   L  ++ +       +Y + LF  + +  +S     G     L +    +  +    
Sbjct: 765 VQSDLSSRYSEPLAKSIGKYLQPLFSKQPIAHLSFNQTTGFSG--LQMKRGKEFYSFDQL 822

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQ 344
           S G ++ +   + L+ A ++ +       L+ D+  A+ D ++   + +++T     G Q
Sbjct: 823 SGGMREQLSAALRLSMAEVLKHEHDGCLPLVFDDAFANSDPERIPHIKQMLTKAVNQGLQ 882

Query: 345 IFMTGTDKSVFDSLNETAKFMRIS 368
           + +   D   + S  E  +  R+S
Sbjct: 883 VIILTCDPESYASFAE--QIFRLS 904


>gi|319892504|ref|YP_004149379.1| DNA repair protein RecN [Staphylococcus pseudintermedius HKU10-03]
 gi|317162200|gb|ADV05743.1| DNA repair protein RecN [Staphylococcus pseudintermedius HKU10-03]
          Length = 560

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 44/279 (15%), Positives = 89/279 (31%), Gaps = 49/279 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +L + F    T+  G+ G GK+ I++AI  L    G R +S  +  R
Sbjct: 2   LQSLSIKQFAIIDTLDIQFSDGLTVLSGETGAGKSIIIDAIGQLI---GMRASS--EFVR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLETR--------DDRSVRCLQINDVVIRVV 113
            G         F      + +  L  + I +                   +IN+  + + 
Sbjct: 57  HGEKKAIIEGIFDIDDAKDAIRQLETLGIDINEDFLIVKREIFSSGKSICRINNQTVTLQ 116

Query: 114 DELNKHLRISWLVPSMDRIFSG-----LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           D     LR             G       ++++  ++ +    D  +   +  + +    
Sbjct: 117 D-----LRQVM---ESLLDIHGQHETQSLLKQKYHVELLDRYADGEYIEELQQYAQSYEQ 168

Query: 169 RNRLLTE----GYFDSSWCSSIE-----------AQMAE---LGVKINIARVEMINALSS 210
               + E       D +    ++           AQ+ E     ++I+I R++    LS 
Sbjct: 169 HQEKIKELEALESADQALLQRLDLMKFQYDELKEAQLKEGEIEQLEIDIKRIQNSENLSL 228

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
            +          H        L  +       L E + K
Sbjct: 229 ALNAAYVTLTDEHAITDRLYTLSSELQNVNQILPETFEK 267


>gi|300690533|ref|YP_003751528.1| DNA repair protein recN (Recombination protein N) [Ralstonia
           solanacearum PSI07]
 gi|299077593|emb|CBJ50226.1| DNA repair protein recN (Recombination protein N) [Ralstonia
           solanacearum PSI07]
          Length = 569

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 92/254 (36%), Gaps = 35/254 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F    +L L      T+F G+ G GK+ +++A   L+   G R  + A V R
Sbjct: 2   LRSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDA---LALTLGER--ADAAVVR 56

Query: 67  IGSPSFFSTFA---------RVEGME-GLADISIKLETRDDRSVR-CLQINDVVI--RVV 113
            G+P    T A          +E  E    D +I L    D + R    IN   +    +
Sbjct: 57  EGAPRADITAAFDTHPQVTTWLEAHELHGDDGTILLRRTVDAAGRSKAFINGAAVTLAQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNR 171
            E+ + L       +   +    +   RR LD      D       R   ++ ++R    
Sbjct: 117 REVGEQLVDIHGQHAHQLLLKTDAQ--RRLLDAHAGLEDEVRTVGERYRAWQAVVR---- 170

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            L E     S  + +E +  E        +V  +  L+    E+ +     H +LS    
Sbjct: 171 -LREAAEQQSREAQLERERVE-------WQVNELQKLAPQPGEW-EDIQAEHHRLSHAAS 221

Query: 232 LDGKFDQSFCALKE 245
           L      +  AL E
Sbjct: 222 LIEGTRAALDALSE 235


>gi|257437777|ref|ZP_05613532.1| conserved hypothetical protein [Faecalibacterium prausnitzii
          A2-165]
 gi|257199792|gb|EEU98076.1| conserved hypothetical protein [Faecalibacterium prausnitzii
          A2-165]
          Length = 1112

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          +K L +  + N+ ++     A+ T  +G N VGKT IL+AI   L+  R F
Sbjct: 4  LKRLKLINWHNFENVTFDC-ARLTYMIGVNAVGKTTILDAIRYCLTTNRNF 53


>gi|237747421|ref|ZP_04577901.1| RecN DNA repair protein [Oxalobacter formigenes HOxBLS]
 gi|229378772|gb|EEO28863.1| RecN DNA repair protein [Oxalobacter formigenes HOxBLS]
          Length = 550

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 20/153 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +F    SL L F +  +   G+ G GK+ +++A+     GRG      + + R
Sbjct: 2   LRTLTVHDFVIVDSLELDFASGFSALTGETGAGKSILIDALHLTLGGRG-----DSGMIR 56

Query: 67  IGS-----------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVV 113
            G+                 + R   +E   D  +   T D        +N V +    +
Sbjct: 57  EGAGKADICAEFSVSDAIVEWLRTNDIECEEDSVLMRRTIDCSGRSRGFVNGVSVTTSQM 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146
            EL   L       +   +    + E+R  LDR
Sbjct: 117 RELAALLIDIHGQNAHQSLLK--ADEQRNLLDR 147


>gi|218886025|ref|YP_002435346.1| SMC domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756979|gb|ACL07878.1| SMC domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 550

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 63/195 (32%), Gaps = 23/195 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L +        + L F        G+ G GK+ IL+A++FL   R      
Sbjct: 1   MLEYLRIRDLAL-----IEDMELDFAPGLNALTGETGAGKSFILKALNFLIGDR-----L 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKL--ETRDDRSVRCLQINDVVIRVVDELNK 118
            +D+ R G        A VE +  L D  + L  E   D     L IND +       + 
Sbjct: 51  TSDMVRPGKEK-----AHVEALFALPDGDMVLRRELTADTGRSRLFINDRLSSQDAVRDM 105

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG----RNRLLT 174
              +        +        + R LD   F   P       D  + +R     R  L  
Sbjct: 106 RASLVVHTSQHGQQKLLQPAFQARLLDE--FLNRPDLLAARDDALKGLREVAARREELAA 163

Query: 175 EGYFDSSWCSSIEAQ 189
                      +E Q
Sbjct: 164 RARSLEDRRDVLEFQ 178


>gi|147797629|emb|CAN76338.1| hypothetical protein VITISV_035723 [Vitis vinifera]
          Length = 350

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          + IK + +  F++YA+  +V  FD       G NG  K+NIL++I F+      R+   +
Sbjct: 2  MYIKXICLEGFKSYATRTVVPGFDPYFNAITGLNGSCKSNILDSICFVLGITNLRQVLAS 61

Query: 63 DV 64
          ++
Sbjct: 62 NL 63


>gi|20803919|emb|CAD31497.1| HYPOTHETICAL PROTEIN [Mesorhizobium loti R7A]
          Length = 670

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAI 47
          +++K   I+ +R+      +  +   TI VG N  GK+ +L+A+
Sbjct: 1  MRLKKARITNYRSVKDSGSIELEPNKTILVGPNEAGKSALLKAL 44


>gi|322515079|ref|ZP_08068087.1| OLD family ATP-dependent endonuclease [Actinobacillus ureae ATCC
          25976]
 gi|322118959|gb|EFX91136.1| OLD family ATP-dependent endonuclease [Actinobacillus ureae ATCC
          25976]
          Length = 521

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ + IS FR    L L       + +G+N  GK+++L+A+S +
Sbjct: 1  MYLQQIEISGFRGINQLTLQLRPNM-VLIGENAWGKSSLLDALSHI 45


>gi|322372796|ref|ZP_08047332.1| DNA repair protein RecN [Streptococcus sp. C150]
 gi|321277838|gb|EFX54907.1| DNA repair protein RecN [Streptococcus sp. C150]
          Length = 556

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 77/225 (34%), Gaps = 30/225 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I  F     + L F+   T+  G+ G GK+ I++A++ +   R     + ++V R
Sbjct: 2   LLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGAR-----ASSEVVR 56

Query: 67  IGSP-----SFFST------FARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIR-VV 113
             +P      FFS        + +E      +  + +     ++ R + +IN  ++   +
Sbjct: 57  HSAPKAEIQGFFSIEQNPALVSLLEDNGIPVEDELIIRREVFQNGRSVSRINGQMVNLTI 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLS---MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
            +   H  +              +        F D+  F    +++     +  L +   
Sbjct: 117 LKAVGHFLVDIHGQHDQEELMRPALHISMLDAFGDKAFFQTKKKYQEYFDRYRELRKAVL 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGV---------KINIARVEMIN 206
                     +    +  Q+AE+            +   R +++N
Sbjct: 177 EKQKNEQEHKARIEMLAFQIAEIEAASLKSGEDFALMKERDKLLN 221


>gi|282881574|ref|ZP_06290243.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304560|gb|EFA96651.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 356

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          + + I  +++   L+L       I +G NG GK+N+L
Sbjct: 2  ESIEIKGYKSIRDLKLKLSP-INILIGANGSGKSNLL 37


>gi|190341703|gb|ACE74928.1| RecN [Cronobacter turicensis]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQAGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|190149415|ref|YP_001967940.1| ATP-dependent endonuclease of the OLD family [Actinobacillus
          pleuropneumoniae serovar 7 str. AP76]
 gi|307244955|ref|ZP_07527052.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|307249351|ref|ZP_07531345.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|307253908|ref|ZP_07535760.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|307258362|ref|ZP_07540103.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
 gi|307262732|ref|ZP_07544359.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
 gi|189914546|gb|ACE60798.1| predicted ATP-dependent endonuclease of the OLD family
          [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|306854120|gb|EFM86328.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 1 str. 4074]
 gi|306858645|gb|EFM90707.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 4 str. M62]
 gi|306863112|gb|EFM95054.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 9 str. CVJ13261]
 gi|306867546|gb|EFM99393.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 11 str. 56153]
 gi|306871877|gb|EFN03594.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 13 str. N273]
          Length = 519

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ + IS FR    L L       + +G+N  GK+++L+A+S +
Sbjct: 1  MYLQQIEISGFRGINHLSLTLRPNM-VLIGENAWGKSSLLDALSHI 45


>gi|42740740|gb|AAS44544.1| structural maintenance of chromosome protein 4 [Trypanosoma cruzi]
          Length = 1215

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 3   NRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
            R+ I+ + +  F++Y        F    T  +G NG GK+N+++A+ F+     +  R 
Sbjct: 59  TRMVIRDIEVENFKSYAGKHRIGPFHKTFTAVIGPNGSGKSNVIDAMLFVFGRNAKKIRL 118

Query: 59  ASYADVTRIGSPSFFSTFARV 79
              +++    +      +A V
Sbjct: 119 ERLSELIHSSAAHPNQAYASV 139


>gi|258514668|ref|YP_003190890.1| SMC domain-containing protein [Desulfotomaculum acetoxidans DSM
          771]
 gi|257778373|gb|ACV62267.1| SMC domain protein [Desulfotomaculum acetoxidans DSM 771]
          Length = 526

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 26/43 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + IK +++  F+++AS  +      TI VG++  GK+ I+ A+
Sbjct: 1  MFIKKISLENFQSHASTEIELPPGLTIIVGESDRGKSAIIRAL 43


>gi|253988754|ref|YP_003040110.1| recombination and repair protein [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|211637921|emb|CAR66549.1| dna repair protein recn (recombination protein n) [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780204|emb|CAQ83365.1| dna repair protein recn (recombination protein n) [Photorhabdus
           asymbiotica]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 76/229 (33%), Gaps = 33/229 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      RG       ++ R
Sbjct: 2   LTQLTISNFAIVRELEIEFRPGMTAITGETGAGKSIAIDALGLCLGNRG-----ETNMVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+                   +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  NGASRADICARFSLADAPSARQWLEEHQLDDSNECLLRRTITSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL  HL       +   +    S  ++R LD      + +H      +++  +    
Sbjct: 116 QLRELGAHLIQIHGQHAHQLLL--DSNHQKRLLDTYANQFNLQH-EMKQAYQKWHQSCQN 172

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
           L            ++E Q      ++    ++ +N L+    EY + +N
Sbjct: 173 LAQFQQ------QALERQ---SRQQLLEYHLKELNELAPQPGEYQEHDN 212


>gi|241204311|ref|YP_002975407.1| SMC domain protein [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858201|gb|ACS55868.1| SMC domain protein [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 818

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I  ++I EFR    L L    Q+    G NG GK+ I++AI F+  G
Sbjct: 3  RIDKIHIKEFRGIRELTLTLKGQNFAACGPNGTGKSGIVDAIEFVLTG 50



 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 60/164 (36%), Gaps = 11/164 (6%)

Query: 197 INIARVE-MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
           +   R++    A  +     V+ +    +  +      G  ++ +  ++  +A       
Sbjct: 449 LAHERLDNYRRARQNHAAGRVRADRATKVSATYGAVTTGALEKIYKNVETAFASYYSKIN 508

Query: 256 KMDSMSRRTLIGPH----RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
           + D  +    + P       D+           A+ S G Q  + + ++LA   L+S+  
Sbjct: 509 EDDEKAFSAKLIPSIGKLGFDVDFYGRGHFPPGAYHSEGHQDGMGLCLYLA---LMSHLL 565

Query: 312 GFAPIL-LLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDK 352
           G      +LD++   +D   R  +  ++ ++   +Q   T  D+
Sbjct: 566 GQNFTFAVLDDVLMSVDSGHRRQVCTLLKEMFPNTQFIFTTHDE 609


>gi|32034539|ref|ZP_00134703.1| COG3593: Predicted ATP-dependent endonuclease of the OLD family
          [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207632|ref|YP_001052857.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae L20]
 gi|126096424|gb|ABN73252.1| predicted ATP-dependent endonuclease of the OLD family
          [Actinobacillus pleuropneumoniae serovar 5b str. L20]
          Length = 519

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ + IS FR    L L       + +G+N  GK+++L+A+S +
Sbjct: 1  MYLQQIEISGFRGINHLSLTLRPNM-VLIGENAWGKSSLLDALSHI 45


>gi|295098433|emb|CBK87523.1| DNA sulfur modification protein DndD [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 602

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 69/232 (29%), Gaps = 31/232 (13%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           +     +R ++ D E+ +      +     D      + A + +L  K    R +  + L
Sbjct: 333 WQRFDMYRHQLADIEQQLEQAAANIARAPEDEQLMD-LFAALRDLDHKREKQRQKYRSLL 391

Query: 209 SSLIM------------EYVQKENFPHIKLS------------LTGFLDGKFDQSFCALK 244
                            +           LS            L  + D         L 
Sbjct: 392 EEAKRTKQQQLDCVRQVQKAHDITRSQHGLSSAFKNAQETINLLDYYSDVLTQARVKKLS 451

Query: 245 EEYAKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
             +        + + +     I P   D+ +VD     I     S GE+++  + I    
Sbjct: 452 ANFEIAYHKLARKEDLQLNAHINPQTFDVELVDEKGSVINRKLLSAGEKQIYAIAI---- 507

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
              ++ T+G    +++D     LD   R+ L      +   Q+ +  TD  V
Sbjct: 508 LEALAKTSGRDFPVIIDTPLGRLDSQHRDKLINHYFPEASHQVVLLSTDTEV 559


>gi|219870854|ref|YP_002475229.1| putative prophage Lp2 protein 4 [Haemophilus parasuis SH0165]
 gi|219691058|gb|ACL32281.1| putative prophage Lp2 protein 4 [Haemophilus parasuis SH0165]
          Length = 547

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          I  LNI  +R   +L L F     +  G NG  K++IL
Sbjct: 2  ITNLNIIHYRKLKNLSLAFKPGINLISGTNGTCKSSIL 39


>gi|116623517|ref|YP_825673.1| condensin subunit Smc [Candidatus Solibacter usitatus Ellin6076]
 gi|116226679|gb|ABJ85388.1| condensin subunit Smc [Candidatus Solibacter usitatus Ellin6076]
          Length = 1210

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 36/177 (20%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRA 59
           +K+K + +  F+++     L F+       VG NG GK+NI +AIS++      +  R A
Sbjct: 2   LKLKRVELQGFKSFCDRTELRFNGEGIAAIVGPNGCGKSNISDAISWVLGEQSAKSLRGA 61

Query: 60  SYADVTRIG----------------------SPSFFSTFARVEGMEGLADISIKLETRDD 97
              DV   G                      + +       VEG +      + +  R  
Sbjct: 62  RMEDVIFAGTRDRKPLGMAYVTMTLVDPDLYNENAAHKLQPVEGGQPPKAAEVTITRRLY 121

Query: 98  RSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLD 145
           RS     + D     + ++      + L P    I               +RR  ++
Sbjct: 122 RSGESEYLIDGRTARLRDIQDLFMGTGLGPESYAIIEQGRIGQILSSKPQDRRNVIE 178


>gi|114797433|ref|YP_759115.1| putative DNA repair protein RecN [Hyphomonas neptunium ATCC 15444]
 gi|114737607|gb|ABI75732.1| putative DNA repair protein RecN [Hyphomonas neptunium ATCC 15444]
          Length = 594

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 73/227 (32%), Gaps = 32/227 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---RGF-RRASYA 62
           +  ++I EF   + L L      T   G+ G GK+ IL+AI+    G   RGF R  +  
Sbjct: 35  LLSISIREFVLISRLDLSPGEGFTALTGETGAGKSIILDAIALALGGPADRGFIRVGADQ 94

Query: 63  DVTR------IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV---- 112
                      G P +    A   G E    +++K   R   S R   IND  +      
Sbjct: 95  ASVAAEFEAGAGHPVWALLKAHGVGAEAGDTLTLKRVVRTQGSARGF-INDQPVSAALLA 153

Query: 113 -VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRGR 169
              +L   +       S+ R         RR LD+     A+           +     R
Sbjct: 154 EAGDLLVEIHGQHAASSLMR-----PSSHRRLLDQFAGNDALLAECAGAWQALDAARAAR 208

Query: 170 NRL---LTEGYFDSSWCSSIEAQMAEL------GVKINIARVEMINA 207
             L            W  +   ++  L        ++   R+ ++ A
Sbjct: 209 ETLKAEQAAAREAREWLEASVEELERLAPQAGEAERLAEERMRLMQA 255


>gi|293401680|ref|ZP_06645822.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
 gi|291304938|gb|EFE46185.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
          5_2_54FAA]
          Length = 449

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
            + I ++R ++++ + F    T+  G NG GKT +L
Sbjct: 27 TRIKIEDWRQFSNIDITFHEHLTVLTGANGAGKTTVL 63


>gi|289428154|ref|ZP_06429853.1| RecF/RecN/SMC N-terminal domain protein [Propionibacterium acnes
          J165]
 gi|289158634|gb|EFD06838.1| RecF/RecN/SMC N-terminal domain protein [Propionibacterium acnes
          J165]
 gi|313808566|gb|EFS47026.1| RecF/RecN/SMC protein [Propionibacterium acnes HL087PA2]
 gi|313826873|gb|EFS64587.1| RecF/RecN/SMC protein [Propionibacterium acnes HL063PA1]
 gi|314979095|gb|EFT23189.1| RecF/RecN/SMC protein [Propionibacterium acnes HL072PA2]
 gi|315089641|gb|EFT61617.1| RecF/RecN/SMC protein [Propionibacterium acnes HL072PA1]
 gi|327334018|gb|EGE75733.1| putative RecF/RecN/SMC N domain protein [Propionibacterium acnes
          HL096PA3]
 gi|327450391|gb|EGE97045.1| RecF/RecN/SMC protein [Propionibacterium acnes HL013PA2]
 gi|332676646|gb|AEE73462.1| ATPase involved in DNA repair [Propionibacterium acnes 266]
          Length = 868

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            RI  P   S    +E  
Sbjct: 60 KVRIAQPYGTSLQVVIEAE 78


>gi|190341605|gb|ACE74879.1| RecN [Cronobacter genomosp. 1]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQAGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|224436906|ref|ZP_03657887.1| DNA repair protein RecN [Helicobacter cinaedi CCUG 18818]
          Length = 516

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 12/176 (6%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP-SFFSTF 76
           +  + L       +F G +G GK+  +E+++ +   +     S AD+       S  +  
Sbjct: 13  FKDVELYLQGGFNVFSGASGSGKSVFMESLTAIFGIKE----SNADLIEANIDVSHIAFD 68

Query: 77  ARVEGMEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLRISWLVPSMDRIFSG 135
               G+    +  I L        R    +     + ++EL           S D +   
Sbjct: 69  WDNYGIPNDLENEIVLSIVKKDKTRYFLNHTSSSKKRLNELVCGFAKHISTKSGDEL--- 125

Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFER---LMRGRNRLLTEGYFDSSWCSSIEA 188
                 R LD  +      H   + ++ER    ++   + L E     +  ++++ 
Sbjct: 126 SPQNLLRILDHFIAKTHKAHLELLTNYERDFLALQEAQKQLKELESKEANIATLKE 181


>gi|218698029|ref|YP_002405696.1| putative ATPase involved in DNA thiolation [Escherichia coli 55989]
 gi|218354761|emb|CAV01839.1| putative ATPase involved in DNA thiolation [Escherichia coli 55989]
          Length = 682

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 31/232 (13%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           +     +R ++ + E+ +      +     D       E ++ +L  +    R + ++ L
Sbjct: 413 WQRFELYRIQLAEIEQQLEQAAANIARAPEDEQLMDIFE-KLRDLDKQRENQRQKYLSLL 471

Query: 209 -------SSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCALKEEYAKKLFDGR----- 255
                     +    Q +       S  GF    K  Q    L + Y+  L   R     
Sbjct: 472 EDAKRVKQQQLDCVRQVQKLHDAARSQHGFSSAFKNAQETINLLDRYSDVLTQARVKTLS 531

Query: 256 -----------KMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                      + + M     I P   D+ ++D     I     S GE+++  + I    
Sbjct: 532 ANFEVAYRKLARKEDMQLSAHINPETFDVELIDEKGSVINRKLLSAGEKQIYAIAI---- 587

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
              ++ T+G    +++D     LD   R+ L          Q+ +  TD  V
Sbjct: 588 LEALAKTSGRDLPVIIDTPLGRLDSQHRDKLINHYFPFASHQVVLLSTDTEV 639



 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 48/299 (16%), Positives = 93/299 (31%), Gaps = 42/299 (14%)

Query: 7   IKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPGRG 55
           IK L +  FR +  +  +    +            +F G NG GKT+IL AI     GR 
Sbjct: 19  IKQLVLHNFRVFNGTHTIDLAPRKRPHEVNPRPIVLFGGLNGAGKTSILSAIRLALYGRL 78

Query: 56  FRRASYAD---------VTRIG-------SPSFFSTFARVEGMEGLADISIKLETRDDRS 99
               +            +   G         +              ++ ++    +  + 
Sbjct: 79  AFGLATQQQDYIEHLSSLIHKGAYYIEQPEEAAVELTFTYNKGGQESEFTVTRTWKKGKK 138

Query: 100 VR-CLQINDVVIRVVDELNKHLRISWLVPSMD-----RIFSGLSMERRRFLDRMVFAIDP 153
            R  LQ +   +  +D    + +    +  +       +F     +     +     I  
Sbjct: 139 DRLSLQKDGQPLSELD----YDQCQGFLNELIPHGIADLFFFDGEKIAELAEDESGNILR 194

Query: 154 RHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
              RR++  + + + RN L+       SS  +  + Q  E+  K +        AL    
Sbjct: 195 TAVRRLLGLDLISKLRNDLMIFVKRQQSSQLAETQQQQIEVLEKQSRDLACQTEALLEKA 254

Query: 213 MEYVQKENFPHIK-LSLTGFL---DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
                +  F     +   G L    G F Q+    K++    L D  +++   R+   G
Sbjct: 255 DFAKSRIEFLSKDIIRYEGLLNAQGGAFAQTKAQEKQKVETLLKDKERLEKALRQECDG 313


>gi|257058570|ref|YP_003136458.1| ATP-dependent endonuclease of the OLD family [Cyanothece sp. PCC
           8802]
 gi|256588736|gb|ACU99622.1| ATP-dependent endonuclease of the OLD family [Cyanothece sp. PCC
           8802]
          Length = 353

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 60/403 (14%), Positives = 120/403 (29%), Gaps = 90/403 (22%)

Query: 5   IKIKFLNIS---EFRNYASLRLV-----FDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
           +K++ + +     FRN                  + +G NG GKT++L+AI         
Sbjct: 1   MKVQSVELKYFKRFRNPPRFDFTDPETGLARDLIVLIGMNGAGKTSLLQAI--------- 51

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-------CLQINDVV 109
                       + +      R++ +  L       E       R        +Q +   
Sbjct: 52  ------------AATLGVATGRLQKLSDLEWPGFNYELLGRNWGRFTPDVTLQVQFSSSE 99

Query: 110 IRVVDELNKHLR---ISWLVPSMDRIFSGLSMERRRFLDR--MVFAID-PRHRRRMID-- 161
           I+ V E ++ LR        P    I +    + R        +F      + +++    
Sbjct: 100 IQAVHEFHQKLRDMGRDLQPPGDQSIVTLKWRDDRVQAGTAAELFQFRGREYAKQLRGSE 159

Query: 162 ----FERL------MRGR--NRLLTEGYFD--SSWCSSIEAQMAELGVKINIARVEMINA 207
               FER          R    L  E   +        +  ++++ G      ++  I  
Sbjct: 160 GFQVFERAGTILWYTEQRTSTSLTPENPHNKLEITYDVLRDRLSKFGQFHQNIQMGKIKE 219

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
                 +   +    +  +      +G         +EE    L +              
Sbjct: 220 FRPGQKDLYAEIEQAYRTVFPKRSFEGPVP------REEIDDILSEPW------------ 261

Query: 268 PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
                  +        I+  S GE+    + +  A+  +         ++L+DEI  HL 
Sbjct: 262 -----FYLYDGKNQYEISEMSGGERATFPIFMDFANWNI------HNSVILIDEIELHLH 310

Query: 328 EDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNETAKFMRIS 368
              + AL R +  +G+  Q  +T T     + L   A  +R+ 
Sbjct: 311 PPMQQALLRALPKLGTNNQFIIT-THSDYVEQLVPEAYIVRLE 352


>gi|165975600|ref|YP_001651193.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 3 str. JL03]
 gi|307256169|ref|ZP_07537956.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|307260601|ref|ZP_07542293.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
 gi|165875701|gb|ABY68749.1| predicted ATP-dependent endonuclease of the OLD family
          [Actinobacillus pleuropneumoniae serovar 3 str. JL03]
 gi|306865350|gb|EFM97246.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 10 str. D13039]
 gi|306869678|gb|EFN01463.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 12 str. 1096]
          Length = 519

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ + IS FR    L L       + +G+N  GK+++L+A+S +
Sbjct: 1  MYLQQIEISGFRGINHLSLTLRPNM-VLIGENAWGKSSLLDALSHI 45


>gi|152991417|ref|YP_001357139.1| hypothetical protein NIS_1676 [Nitratiruptor sp. SB155-2]
 gi|151423278|dbj|BAF70782.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 684

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNYASLRL-----VFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +K L + +FR +   ++       +    +  G+NG GKT +LEA S+   G
Sbjct: 1  MFLKTLVLEDFRQFKDRQILNLTTTNEKNIVLIHGENGAGKTTLLEAFSWCLYG 54


>gi|47224982|emb|CAF97397.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1305

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  L    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 33  APRLMITHLLNRNFKSYAGEQILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 92

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 93  SKKLSVLIHSSDKHKDVESCTVEVHFQKI 121


>gi|117923430|ref|YP_864047.1| hypothetical protein Mmc1_0112 [Magnetococcus sp. MC-1]
 gi|117607186|gb|ABK42641.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
          Length = 430

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 64/402 (15%), Positives = 114/402 (28%), Gaps = 66/402 (16%)

Query: 6   KIKFLNISEFRNYASLRL---------VFDAQHTIFVGDNGVGKTNILEAISFLS-PGRG 55
           KI+   I  FR    + L               T  +G NGVGK+ + +A  FLS   + 
Sbjct: 3   KIEGFRIKNFRALKDVTLGRLWNQQQADPLTSMTAVIGKNGVGKSTLFDAFGFLSDALKS 62

Query: 56  -------FRRASYADVTRIGSPSF---FSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
                   R     +  R         F  + + +G        I ++         L+ 
Sbjct: 63  GVEEACDSRGRGGFERIRAQGQKGSIEFEVYYKEDGNARPITYEISIDVDSSGRPYVLKE 122

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
                R   +         L      ++ G    R+  +D      D      +   E +
Sbjct: 123 RLRQRRKGQKHGWPFSFLVLNSGKGVVWKGDQEGRQ--IDEEQGDFD-----LLGLMESI 175

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQ---MAELGV-----KINIARVEMINALSSLIMEYVQ 217
              ++    E   ++      + +   +A LG      +I+  R + I            
Sbjct: 176 ---KSGEAKEESKETDVVELDDMRKLGIATLGSLKQHPRISAFR-KFIEGWYLSYFTPDA 231

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD----- 272
             + P         + G    +     E    K F         +  + G ++ D     
Sbjct: 232 ARSLPLAGPQKHLNIHGDNLGNVVQFMEREHPKRFQAILNRIAEK--IPGINKIDTEKTN 289

Query: 273 ---LIVDYCDKAITIAHGST----GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
              L++ + D+       S     G  KV    + L             P L ++E    
Sbjct: 290 DGRLLLRFNDRGFQDPFYSQQMSDGTLKVFAYLLLL-------EDPTPPPFLCIEEPENG 342

Query: 326 LDEDKRNALFRIVTDI------GSQIFMTGTDKSVFDSLNET 361
           L      +L     D       GSQ+F+T     + D+L   
Sbjct: 343 LYHKLLESLVNEFRDHATGRKGGSQVFITTHQPYLVDALESK 384


>gi|219668192|ref|YP_002458627.1| ATPase AAA [Desulfitobacterium hafniense DCB-2]
 gi|219538452|gb|ACL20191.1| AAA ATPase [Desulfitobacterium hafniense DCB-2]
          Length = 250

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 16 RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          RN     L    + T  VG+NG GK+ ILEAI+ 
Sbjct: 34 RNLD--TLALHPKVTFLVGENGSGKSTILEAIAV 65


>gi|297571511|ref|YP_003697285.1| DNA repair protein RecN [Arcanobacterium haemolyticum DSM 20595]
 gi|296931858|gb|ADH92666.1| DNA repair protein RecN [Arcanobacterium haemolyticum DSM 20595]
          Length = 564

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 58/192 (30%), Gaps = 35/192 (18%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++IK L +          + F        G+ G GKT  L ++  L   +      
Sbjct: 1   MIEELRIKDLGV-----IEHAHVQFGPGLNALTGETGAGKTMALTSLMMLMGAK-----I 50

Query: 61  YADVTRIGSPSFFS------------------TFARVEGMEGLADISIKLETRDDRSVRC 102
            +   R G+ +                         V+  +  A I +          R 
Sbjct: 51  DSAKVRAGAQAAVVDGTFVVDAHSPAIDIVRNAGGDVDIDDDQAVIYVSRHVPASGRTRA 110

Query: 103 LQIND-VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD----RMVFAIDPRHRR 157
                 V + ++ +L++HL         D++       +R+ LD      V     ++R 
Sbjct: 111 YVGGQAVPLAILKQLSEHLVTV--HGQKDQLRLTAPQAQRKVLDTYGGTSVGKTLEKYRD 168

Query: 158 RMIDFERLMRGR 169
               ++   R R
Sbjct: 169 AWETYQTTQRER 180


>gi|282878545|ref|ZP_06287326.1| conserved domain protein [Prevotella buccalis ATCC 35310]
 gi|281299336|gb|EFA91724.1| conserved domain protein [Prevotella buccalis ATCC 35310]
          Length = 356

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          + + I  +++   L+L       I +G NG GK+N+L
Sbjct: 2  ESIEIKGYKSIRDLKLKLSP-VNILIGANGSGKSNLL 37


>gi|239817304|ref|YP_002946214.1| DNA repair protein RecN [Variovorax paradoxus S110]
 gi|239803881|gb|ACS20948.1| DNA repair protein RecN [Variovorax paradoxus S110]
          Length = 559

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 17/128 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + + +F    SL L   A  T+  G+ G GK+ +++A+  L+ G      + A  
Sbjct: 1   MALRRIALRDFVIVRSLELDLSAGFTVLTGETGAGKSILIDALQ-LALG----NRADAGA 55

Query: 65  TRIGSPSFFS---------TFARVEGMEGLADISIKLETRDDRSVRCL-QINDVV--IRV 112
            R G+                A ++        ++ L    D   R    IN        
Sbjct: 56  VREGAERLDVSAEFDADPALAAWLDEGGFENGDALLLRRTVDLQGRSRGWINGSPATATQ 115

Query: 113 VDELNKHL 120
           + EL   L
Sbjct: 116 LRELGDRL 123


>gi|238496327|ref|XP_002379399.1| nuclear condensin complex subunit Smc2, putative [Aspergillus
           flavus NRRL3357]
 gi|220694279|gb|EED50623.1| nuclear condensin complex subunit Smc2, putative [Aspergillus
           flavus NRRL3357]
          Length = 1179

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRITEVVIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A+IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDTAKSPIGFEEYANISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|161524560|ref|YP_001579572.1| ATPase-like protein [Burkholderia multivorans ATCC 17616]
 gi|189350684|ref|YP_001946312.1| ATPase-like protein [Burkholderia multivorans ATCC 17616]
 gi|160341989|gb|ABX15075.1| ATPase-like protein [Burkholderia multivorans ATCC 17616]
 gi|189334706|dbj|BAG43776.1| ATPase-like protein [Burkholderia multivorans ATCC 17616]
          Length = 392

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +  L I+ +R+   L +   A  T+  G NG GK+++  A+  L+
Sbjct: 3  ALNTLAIANYRSLRELTVPLAA-LTVVTGPNGSGKSSVYRALRLLA 47


>gi|123969454|ref|YP_001010311.1| DNA repair protein RecN, ABC transporter [Prochlorococcus marinus
           str. AS9601]
 gi|123199564|gb|ABM71205.1| DNA repair protein RecN, ABC transporter [Prochlorococcus marinus
           str. AS9601]
          Length = 559

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++KI+ + +        + + F+    I  GD+G GK+ IL++++ L  G       
Sbjct: 1   MLIQLKIENIAL-----IEIIEINFEKGLNIITGDSGSGKSLILDSLNALFGGT---NIP 52

Query: 61  YADVTRIGS-----PSFFSTFARV---------EGMEGLADISIKLETRDDRSVRCLQIN 106
              + R G       + FS+  ++         E       I  K   ++++ +    +N
Sbjct: 53  LKHLIRPGKDFCVIEAIFSSSFQINNWLISNGFEITSSELQIKRKSYKKNNKILSKYSLN 112

Query: 107 DVVIRVVDELNKHLRISW-LVPSMDRIFSGLSMERRRFLDRMVFA 150
           D+ I     L K  R         D        +RR  +D +   
Sbjct: 113 DLPINKQS-LEKLGRFLIDFAGQSDTFIFDSLDKRRLIIDDLCSQ 156


>gi|119385462|ref|YP_916518.1| chromosome segregation protein SMC [Paracoccus denitrificans
           PD1222]
 gi|119375229|gb|ABL70822.1| chromosome segregation protein SMC [Paracoccus denitrificans
           PD1222]
          Length = 1167

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 21  LRFDRLRLNGFKSFVDPTDLVIHEGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGEG 80

Query: 61  YADVT-----RIGSPSFFSTFARVEGMEGLADIS------IKLETRDDR-SVRCLQINDV 108
             DV      R  + +       ++    LA         + +  R  R +    +IN  
Sbjct: 81  MEDVIFAGTARRSARAHAEVTLTIDNKARLAPAGMNDSDALDITRRITRDAGSAYRINGK 140

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P++ R      + +     RRR L+
Sbjct: 141 EVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKARRRVLE 185


>gi|302552639|ref|ZP_07304981.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302470257|gb|EFL33350.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 703

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 148/427 (34%), Gaps = 70/427 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA---SY 61
           ++I  + IS +R   S+ +  + +    +G+N  GK+++ +A++    G     +   S 
Sbjct: 1   MRITKVKISNYRGLESVEIPLN-RFGCVIGENNAGKSSVFQALNTFLRGSAMDSSDFLSR 59

Query: 62  ADVTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-VIRVVDELN 117
               R+    S       AR++  +  A I  ++E      VR         IRV+ ++ 
Sbjct: 60  RQNIRVQVSFSEIGPDDLARLD-TQHRAKIEKEVEDGSLTLVRTYTSPGKGEIRVLSKVP 118

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           +  R S +           + E    +   V    P    ++    ++ +   R   E  
Sbjct: 119 RDERFSSVALEGTLKVGLSAAE----ISANVQHTYPEIYDQLN--GKITKAAVRRAFEEL 172

Query: 178 FDSSWCSSIEAQMAELGVKINIA---------RVEMINALSSLIMEYVQKENFPHIKLSL 228
             +     +    ++L   I+ +          +  +  L+  +           + L L
Sbjct: 173 VSNLRPEELTEGESKLPTGIDRSITTLLPDVIYIPAVKELNDELKTTDSSTFGKLLGL-L 231

Query: 229 TGFLDGK---FDQSFCALKE-----------EYAKKLFDGRKMDSMSRRTLI-GPHRSDL 273
            G ++ +     +SF  L++           E  ++L + R ++ +  R L     R+D+
Sbjct: 232 FGQIEHQMPTLQKSFDDLRQHLNVVTDDQGNEIDQRLQEVRDVEKLIERNLQEAFPRADV 291

Query: 274 IVDYCDKAITIAHGST-----------------GEQKVVLVGIFLA-------HARLISN 309
            +D    A+     S                  G ++ V   I  A          L S+
Sbjct: 292 RLDIPPPALRTLLSSAEISINDGVSGHFRTKGDGLRRSVTFAILRAYVDQKKKQVDLESS 351

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMTGTDKSVFDSLNETAKFMR 366
                 ILL +E    L    +  LF  +    SQ   + +T T  S F    ET  F++
Sbjct: 352 GAERPTILLFEEPEVFLHPRAQRKLFEAL-KFFSQYNDVLVT-THSSAFYGPKETGTFVK 409

Query: 367 -ISNHQA 372
            I NHQ 
Sbjct: 410 MIKNHQV 416


>gi|296412283|ref|XP_002835854.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629650|emb|CAZ80011.1| unnamed protein product [Tuber melanosporum]
          Length = 1345

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 47/259 (18%), Positives = 93/259 (35%), Gaps = 51/259 (19%)

Query: 6   KIKFLNISEFRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-------- 54
           +I  L I   R++ +     + F A  T+ VG NG GKT I+E + + + G         
Sbjct: 43  RIDKLAILGVRSFDNTRSETIQFHAPLTLIVGYNGSGKTTIIECLKYATTGDLPPNSKGG 102

Query: 55  --------------------GFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLET 94
                                F+  S A +    + S   T  +    +   +  + +  
Sbjct: 103 AFIHDPKMCGEKEVLAQVKLSFKSTSDAKMVC--TRSLQLTVKKTTRQQKTLEGQLLVVR 160

Query: 95  RDDRSV---RCLQINDVVIRVVDELNKHLRISWLVPSMDRI--FSGLSMERRRFLDRMVF 149
             +RS    RC +++ V+ + +      L         + +   S  ++ ++RF +    
Sbjct: 161 NGERSTISSRCAELDQVMPQYLGVSKAVLEYVIFCHQDESLWPLSEPAVLKKRFDEI--- 217

Query: 150 AIDPRHRRRMIDFERLMRGRNR--------LLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
             +     + ID  +++R +          LL +   D       + +  EL  +I   R
Sbjct: 218 -FEALKYTKAIDNIKILRKKQNEELGNLKILLEQYRTDKDRGERAKRRSDELHDEIESMR 276

Query: 202 VEMINALSSLIMEYVQKEN 220
           +E +  LS  I E V ++ 
Sbjct: 277 LE-VTELSRQISEIVAQQA 294


>gi|167767258|ref|ZP_02439311.1| hypothetical protein CLOSS21_01777 [Clostridium sp. SS2/1]
 gi|167711233|gb|EDS21812.1| hypothetical protein CLOSS21_01777 [Clostridium sp. SS2/1]
 gi|291559431|emb|CBL38231.1| hypothetical protein CL2_12570 [butyrate-producing bacterium
          SSC/2]
          Length = 517

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI  + I  FR Y     +  +   T+ VG N +GK+ ILEA+
Sbjct: 1  MKIDSMKIKNFRGYKDETEIKLND-LTVLVGKNDIGKSTILEAL 43


>gi|313499397|gb|ADR60763.1| ATPase-like protein [Pseudomonas putida BIRD-1]
          Length = 387

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I  +R+   L L    Q  +  G NG GK+N+ +A+  L+
Sbjct: 2  LTTLAIGNYRSINHLVLPLG-QLNLVTGANGSGKSNLYKALRLLA 45


>gi|21910687|ref|NP_664955.1| putative DNA repair and genetic recombination protein
           [Streptococcus pyogenes MGAS315]
 gi|28895623|ref|NP_801973.1| DNA repair and genetic recombination protein [Streptococcus
           pyogenes SSI-1]
 gi|306827055|ref|ZP_07460353.1| DNA repair protein RecN [Streptococcus pyogenes ATCC 10782]
 gi|21904890|gb|AAM79758.1| putative DNA repair and genetic recombination protein
           [Streptococcus pyogenes MGAS315]
 gi|28810872|dbj|BAC63806.1| putative DNA repair and genetic recombination protein
           [Streptococcus pyogenes SSI-1]
 gi|304430801|gb|EFM33812.1| DNA repair protein RecN [Streptococcus pyogenes ATCC 10782]
          Length = 553

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 82/234 (35%), Gaps = 34/234 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 2   LLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTEVIR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----TRDD---RSVRCLQINDVVIRVV- 113
            G+       FFS  A  E +  L    I +E     R D         +IN  ++ +  
Sbjct: 57  RGANKAEIEGFFSVDATPELVACLESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLAT 116

Query: 114 ---------DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
                    D   +H +   + P + +           F D+    +   ++     ++ 
Sbjct: 117 LKQVGQFLVDIHGQHDQEELMRPQLHQQILDA------FGDKAFEQLKENYQLIFDRYKS 170

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQ 217
           L R                  +  Q+AE+    ++    + +N     +M + Q
Sbjct: 171 LRRQVIDKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQ 224


>gi|320582443|gb|EFW96660.1| putative nuclear cohesin complex SMC ATPase [Pichia angusta DL-1]
          Length = 1518

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 103/295 (34%), Gaps = 27/295 (9%)

Query: 83   EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD-----RIFSGLS 137
            E   ++  +LE     S + L    ++    DE+++ +R   ++P         I SG  
Sbjct: 1214 ESQRNLLRRLENYGKSSEKSLSRKVLLGNRRDEISRKIRDLGVLPEEAFTAYKDISSGEV 1273

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
            +     +   +      +++ +  F    + R+ L+           SIE  ++ L  + 
Sbjct: 1274 LNLLNEVTESLKQYSHVNKKALEQFLNFAKQRDSLVARKNELDDAKESIEDLISVLERRK 1333

Query: 198  NIARVEMINALSSLIMEYVQKE---NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            + A +     +S    E  +K        + +       GK  +      ++        
Sbjct: 1334 DDAIIRTFKEVSIGFTEVFEKLVPAGTGKLIIQKRSEKVGKGKRGIEQDSDD-------- 1385

Query: 255  RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
             + D+      +G   S       D+   I   S G++ +  + + LA           A
Sbjct: 1386 -EEDAELVDQYVGISISVSFNSREDEQQRIEQLSGGQKSLCAIALILA-----IQKCDPA 1439

Query: 315  PILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRI 367
            P  L DEI A+LD   R ++ +I+ ++   +Q   T       + L    K+  +
Sbjct: 1440 PFYLFDEIDANLDAQYRTSVSQIIHELSRNAQFICTT---FRPEMLKVCDKYFGV 1491



 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 12/79 (15%)

Query: 9   FLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI------SFLSPGRGFRRAS 60
            + I  F+ Y ++ +   F  +H + VG NG GK+N   AI      ++ +  R  R++ 
Sbjct: 328 KIVIQGFKTYKNMTIIDSFSPKHNVVVGRNGSGKSNFFAAIRFVLSDAYTNMTREERQS- 386

Query: 61  YADVTRIGSPSFFSTFARV 79
              +   GS +  S +  +
Sbjct: 387 ---LIHEGSGTVMSAYVEI 402


>gi|313143378|ref|ZP_07805571.1| DNA repair protein RecN [Helicobacter cinaedi CCUG 18818]
 gi|313128409|gb|EFR46026.1| DNA repair protein RecN [Helicobacter cinaedi CCUG 18818]
          Length = 515

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 12/176 (6%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP-SFFSTF 76
           +  + L       +F G +G GK+  +E+++ +   +     S AD+       S  +  
Sbjct: 12  FKDVELYLQGGFNVFSGASGSGKSVFMESLTAIFGIKE----SNADLIEANIDVSHIAFD 67

Query: 77  ARVEGMEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDELNKHLRISWLVPSMDRIFSG 135
               G+    +  I L        R    +     + ++EL           S D +   
Sbjct: 68  WDNYGIPNDLENEIVLSIVKKDKTRYFLNHTSSSKKRLNELVCGFAKHISTKSGDEL--- 124

Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFER---LMRGRNRLLTEGYFDSSWCSSIEA 188
                 R LD  +      H   + ++ER    ++   + L E     +  ++++ 
Sbjct: 125 SPQNLLRILDHFIAKTHKAHLELLTNYERDFLALQEAQKQLKELESKEANIATLKE 180


>gi|325298423|ref|YP_004258340.1| DNA repair protein RecN [Bacteroides salanitronis DSM 18170]
 gi|324317976|gb|ADY35867.1| DNA repair protein RecN [Bacteroides salanitronis DSM 18170]
          Length = 554

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 73/207 (35%), Gaps = 22/207 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ ++I  +     L + F    ++  G+ G GK+ IL AI  L    +  +  +  +  
Sbjct: 2   LQSIHIQNYALIDKLDIDFMPGFSVITGETGAGKSIILGAIGLLLGQRADMKAIKSGASK 61

Query: 63  -------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
                   +   G  SFF+    ++      +  ++ E   +   R   IND    +   
Sbjct: 62  CIVEARFHIVSYGLESFFN---ELDLEYDPEECILRREVSANGKSRAF-INDTPASLAQM 117

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP---RHRRRMIDFERLMRGRNRL 172
                ++  +      +       +   LD ++   D     +++   D++   +  + L
Sbjct: 118 KALGEKLIDIHSQHQNLLLNKEGFQLTILD-ILAQDDKQLASYKQMYADYKNTCKELDTL 176

Query: 173 L---TEGYFDSSWCSSIEAQMAELGVK 196
           +    +   D  +      Q+ E G++
Sbjct: 177 IGQAEKSKQDEDYLRFQLEQLEEAGLR 203


>gi|303249848|ref|ZP_07336052.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|307251672|ref|ZP_07533577.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|302651415|gb|EFL81567.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
 gi|306860869|gb|EFM92877.1| ATP-dependent endonuclease [Actinobacillus pleuropneumoniae
          serovar 6 str. Femo]
          Length = 523

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ + IS FR    L L       + +G+N  GK+++L+A+S +
Sbjct: 1  MYLQKIEISGFRGINHLSLTLRPNM-VLIGENAWGKSSLLDALSHI 45


>gi|332666439|ref|YP_004449227.1| DNA repair protein RecN [Haliscomenobacter hydrossis DSM 1100]
 gi|332335253|gb|AEE52354.1| DNA repair protein RecN [Haliscomenobacter hydrossis DSM 1100]
          Length = 551

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 72/199 (36%), Gaps = 16/199 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           IK L+I  +     L + F    TI  G+ G GK+ +L A+  +    +  +        
Sbjct: 2   IKRLHIRNYAIIEHLDIDFAKGLTIITGETGAGKSILLGALGLIMGDRADTKSLYNQEEK 61

Query: 63  DVTR----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDEL 116
            V      +        FA  + ++   ++ ++ E       R   +ND  +  +V+ +L
Sbjct: 62  CVIEGIFDLNGQDLSEFFAEND-LDNETEVVVRRELTPSGKSRAF-VNDSPVTLKVLQDL 119

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP--RHRRRMIDFERLMRGRNRLLT 174
           +  L    L    D +       + R +D +    +   ++R    +F    R  + LL 
Sbjct: 120 SAEL--IDLHQQFDTLDIHNLSFQLRMIDALAGNKERLLQYRNVYKEFSANQRRLDELLR 177

Query: 175 EGYFDSSWCSSIEAQMAEL 193
                +     I+ Q+ E 
Sbjct: 178 RNEQSTKEMDFIQFQLEEF 196


>gi|332297897|ref|YP_004439819.1| DNA repair protein RecN [Treponema brennaborense DSM 12168]
 gi|332181000|gb|AEE16688.1| DNA repair protein RecN [Treponema brennaborense DSM 12168]
          Length = 582

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 90/243 (37%), Gaps = 19/243 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++IS+F    S+ L F+   T+  G+ G GK+ ++ A+SFL   +G       +V R
Sbjct: 2   LEDVSISDFALIESVSLDFNGGFTVLSGETGAGKSILIGALSFLLGAKG-----GTEVIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+       ARV G   L+    +     D      + + V++R            W+ 
Sbjct: 57  AGAQE-----ARVSGTFVLSAADTEAAAWLDAHGVEAENDRVLLRRFVRDTGKTGA-WI- 109

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
                +      E   FL  +    + +   R+ +  R +     +  E    +   + +
Sbjct: 110 -QNTSVTRAELAEFSAFLVDIHGQHEHQSLMRVAEHRRFLDSYAGITAETAAFTELYAQL 168

Query: 187 ---EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD--GKFDQSFC 241
                Q+ EL    +  R      LS  I E    +  P+    LT       +F+Q + 
Sbjct: 169 VEKRRQLDELNSS-DSERARKAEMLSFAIAEITDAKLLPNEDEELTAEETRLSRFEQIYS 227

Query: 242 ALK 244
            ++
Sbjct: 228 EIE 230


>gi|331219761|ref|XP_003322557.1| DNA repair protein RAD50 [Puccinia graminis f. sp. tritici CRL
          75-36-700-3]
 gi|309301547|gb|EFP78138.1| DNA repair protein RAD50 [Puccinia graminis f. sp. tritici CRL
          75-36-700-3]
          Length = 1291

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I  L I   R++ +  +    F +  T+ VG NG GKT I+E++ +++ G
Sbjct: 3  QIDKLAIRGIRSFDNQSIAVIQFYSPLTVIVGHNGSGKTTIIESLKYITTG 53



 Score = 36.8 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 14/99 (14%)

Query: 284  IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-- 341
                S G++ +  + I LA A       G   IL LDE + +LD++  +AL   + +I  
Sbjct: 1184 RGRCSAGQKVLASIIIRLALAESFGTNCG---ILALDEPTTNLDKENIDALANSLAEIIK 1240

Query: 342  ------GSQIFMTGTDKSVFDSLNET---AKFMRISNHQ 371
                    Q+ +   D+   + L +     K+ R+S +Q
Sbjct: 1241 ERRDQANFQLVVITHDEDFLNRLGQADVLDKYWRVSRNQ 1279


>gi|298386582|ref|ZP_06996138.1| DNA repair protein RecN [Bacteroides sp. 1_1_14]
 gi|298260959|gb|EFI03827.1| DNA repair protein RecN [Bacteroides sp. 1_1_14]
          Length = 555

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 18/202 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  RR +  
Sbjct: 2   LRSLYIQNYALIEKLDIGFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRRGASK 61

Query: 63  DVT--RIGSPSFFST--FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDEL 116
            +   R    ++     F   E      +  ++ E +     R   IND       V EL
Sbjct: 62  CIIEARFDISAYGMRPFFEENELEYDDEECILRREVQASGKSRAF-INDTPASLAQVKEL 120

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRGRNR 171
            + L           +       +   LD +    D               +R +     
Sbjct: 121 GEQLIDV--HSQHQNLLLNKEGFQLNVLDILAHNDDALEKYHLLYNEWKLLDRELSELTA 178

Query: 172 LLTEGYFDSSWCSSIEAQMAEL 193
           L  +   D  +      Q+ E 
Sbjct: 179 LAEQSRTDEDYLRFQLEQLEEA 200


>gi|284039460|ref|YP_003389390.1| SMC domain protein [Spirosoma linguale DSM 74]
 gi|283818753|gb|ADB40591.1| SMC domain protein [Spirosoma linguale DSM 74]
          Length = 378

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M  +  ++ +++S FR+  S+ L       I +G NG GK+N +E   FL
Sbjct: 14 MDGQHTLQSIHVSGFRSIQSVDLPIQD-LNILIGQNGAGKSNFIELFRFL 62


>gi|226954363|ref|ZP_03824827.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
 gi|226834899|gb|EEH67282.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
          Length = 282

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/106 (17%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +++K   +  FR+      +     T  +G N  GKTN+L A+  L+P       S    
Sbjct: 1   MELKAFQVENFRSIDQSEWINIDDVTALIGTNESGKTNLLCALWKLNP------VSDDGK 54

Query: 65  TRIGSPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDVV 109
             + S +    ++++   +     I  K E  ++ +    ++    
Sbjct: 55  INLLSDAPRKLYSQLRASDKSTIFIRCKFELNENEAQHISKLRKTP 100


>gi|255283559|ref|ZP_05348114.1| conserved hypothetical protein [Bryantella formatexigens DSM
          14469]
 gi|255265821|gb|EET59026.1| conserved hypothetical protein [Bryantella formatexigens DSM
          14469]
          Length = 444

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 6  KIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++  + I ++++  + L +  ++  T+ +G N  GKTNILEA+
Sbjct: 3  RLTKVRIHQYKSIENALDMDVESDITVLMGKNEAGKTNILEAL 45


>gi|27764621|ref|NP_776243.1| Yga2G [Corynebacterium glutamicum]
 gi|27657792|gb|AAO18220.1| Yga2G [Corynebacterium glutamicum]
          Length = 645

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 5  IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61
          +KI  L +S F+++      L      T  +G NG GKT +LEA+S   SP    R    
Sbjct: 1  MKITVLRLSNFQSFGQGPTSLNLTD-ITYVLGPNGAGKTAVLEALSRLFSPVAAQRTIRI 59

Query: 62 AD 63
          +D
Sbjct: 60 SD 61


>gi|116619647|ref|YP_821803.1| DNA repair protein RecN [Candidatus Solibacter usitatus Ellin6076]
 gi|116222809|gb|ABJ81518.1| DNA repair protein RecN [Candidatus Solibacter usitatus Ellin6076]
          Length = 561

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 88/283 (31%), Gaps = 41/283 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  +     LR+ F A   +  G+ G GK+ +++A+  L   R     + A++ R
Sbjct: 2   LLELVVENYAVVERLRVHFHAGLNLLTGETGSGKSIVVDALGLLLGSR-----ASAEMIR 56

Query: 67  IGS------------------PSFFSTFARVEGME-GLADISIKLETRDDRSVRCL---- 103
            G+                   S         G+E    ++ ++ E       R      
Sbjct: 57  TGAGRARVAGIFEIREPEVRDQSALRRLLEQAGLEIEEGELLVEREILGSGKSRAFVGSR 116

Query: 104 -----QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHR 156
                 + D+   + D   +H +    +P   R         R  LDR   ++       
Sbjct: 117 PVSVALLRDLAPFLGDIHGQHDQQLLFLPDAQRDMLDAFAGNRELLDRAAGLYQQWRASA 176

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR--VEMINALSSLIME 214
             + + ER  + + RLL    F        E + A+    +   R  ++ +  L      
Sbjct: 177 AELEELERNEQEKLRLLDLWSFQRKEIEGAELE-ADEDTALENERRVLQNVQKLQESAGT 235

Query: 215 YVQKEN-FPHIKLSLTGFLDGKFDQS--FCALKEEYAKKLFDG 254
                   P   LSL      + D+     +  E   + L   
Sbjct: 236 AYDAVFESPESALSLARIAAKRVDELCRIDSSLEGLREHLKSA 278


>gi|325265409|ref|ZP_08132133.1| DNA repair protein RecN [Clostridium sp. D5]
 gi|324029410|gb|EGB90701.1| DNA repair protein RecN [Clostridium sp. D5]
          Length = 558

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 10/118 (8%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L + +      + + F     I  G+ G GK+ IL ++     GR      
Sbjct: 1   MLQNLHVKNLALID-----EIEVEFQPGLNILTGETGAGKSIILGSVGLALGGR-----Y 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            AD+ R G+       A     E +      L+   +  +  L    +  R + ++N 
Sbjct: 51  SADMLRKGAQFGLVELAFTVEDEAVRTQLEALDIFPEEGMLILSRKLMEGRSISKING 108


>gi|323977729|gb|EGB72815.1| hypothetical protein ERFG_01251 [Escherichia coli TW10509]
          Length = 481

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFD--------AQHTIFVGDNGVGKTNILEAISFL 50
          + IK L I  F+ Y      L F+        +   IFVG+N  GK+ + E I F+
Sbjct: 1  MFIKKLKIENFKGYHGEDNELEFNIPDGETEGSGLNIFVGENNAGKSTVFEIIDFI 56


>gi|308176939|ref|YP_003916345.1| DNA repair protein RecN [Arthrobacter arilaitensis Re117]
 gi|307744402|emb|CBT75374.1| DNA repair protein RecN [Arthrobacter arilaitensis Re117]
          Length = 584

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 76/241 (31%), Gaps = 44/241 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ + IS         L      T+  G+ G GKT ++ A+S L       R + A   R
Sbjct: 2   IQEIQISNLGVITEATLPLGPGLTVVTGETGAGKTMVITALSLLLG-----RRADAGAVR 56

Query: 67  IGS------------------PSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQIND 107
            G+                   +     A +E   E    +  +  +   RS   +    
Sbjct: 57  NGAKHALAEAVVHLPPDHHVLDAAGQAGAFIEPAGENSELLLSRSLSAQGRSRATIGGRS 116

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
             + ++ EL   L         D+I     + +R  LDR   +      R + +++R  R
Sbjct: 117 APVGLLAELGHDLVAV--HGQSDQIRLKEPVAQRDALDRFAGS---SLSRTLSNYQRAYR 171

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                            S   ++A L  + +  RV     L   + E    +  P    S
Sbjct: 172 Q--------------WRSAAKELASLKTE-SRNRVREAENLRLALDEIDSLDPQPGEDES 216

Query: 228 L 228
           L
Sbjct: 217 L 217


>gi|238022588|ref|ZP_04603014.1| hypothetical protein GCWU000324_02496 [Kingella oralis ATCC
          51147]
 gi|237867202|gb|EEP68244.1| hypothetical protein GCWU000324_02496 [Kingella oralis ATCC
          51147]
          Length = 478

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 10/59 (16%)

Query: 5  IKIKFLNISEFRNY--ASLRLVF--------DAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + IK + +S F+ +   + ++ F         +   IFVG+N  GK++I EA+ FL  G
Sbjct: 1  MFIKSICLSNFKGFIGENHQINFKIPDGTTAGSGLNIFVGENNSGKSSIFEAVDFLRNG 59


>gi|212710896|ref|ZP_03319024.1| hypothetical protein PROVALCAL_01964 [Providencia alcalifaciens
          DSM 30120]
 gi|212686593|gb|EEB46121.1| hypothetical protein PROVALCAL_01964 [Providencia alcalifaciens
          DSM 30120]
          Length = 396

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI+ + I +    ++L L   + Q  I  G+NGVGKTN+L++I+  
Sbjct: 1  MKIESIKIIDVGGISNLVLQNLNQQINIICGENGVGKTNVLDSIASC 47


>gi|317506151|ref|ZP_07963974.1| hypothetical protein HMPREF9336_00343 [Segniliparus rugosus ATCC
          BAA-974]
 gi|316255573|gb|EFV14820.1| hypothetical protein HMPREF9336_00343 [Segniliparus rugosus ATCC
          BAA-974]
          Length = 836

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYA 62
          +++  + +  +R      +VF A   T+  G N  GK++++EA+  L   +   +     
Sbjct: 1  MRLHRIKLEHYRGVRDREVVFAADGVTVVEGPNESGKSSMIEALDLLFEAKDASKTRQVR 60

Query: 63 DVTRIGSPSFFSTFARVE 80
           +   G+ +  S  A +E
Sbjct: 61 AIAPKGADAAPSVEAELE 78


>gi|226323199|ref|ZP_03798717.1| hypothetical protein COPCOM_00971 [Coprococcus comes ATCC 27758]
 gi|225208389|gb|EEG90743.1| hypothetical protein COPCOM_00971 [Coprococcus comes ATCC 27758]
          Length = 392

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 21/121 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L + +        + F     I  G+ G GK+ IL ++S    GR      
Sbjct: 1   MLQNLHVKNLALID-----EAEVDFSGGLNILTGETGAGKSIILGSVSLALGGR-----Y 50

Query: 61  YADVTRIGSPSFFS----------TFARVEGMEGLADISIKLETRDDRSVRCL-QINDVV 109
            AD+ R G+               T  ++E M+   D    + TR     R + +IN   
Sbjct: 51  SADMLRKGADKGLVELTFYVENPETVRKLEEMDLSPDGGQIIITRRFNGNRSVSRINGET 110

Query: 110 I 110
           +
Sbjct: 111 V 111


>gi|254506794|ref|ZP_05118934.1| DNA repair protein RecN [Vibrio parahaemolyticus 16]
 gi|219550375|gb|EED27360.1| DNA repair protein RecN [Vibrio parahaemolyticus 16]
          Length = 554

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 48/255 (18%), Positives = 90/255 (35%), Gaps = 36/255 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  + L      L    ++  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFSLENNIHATRWLEDNDLLDGSDCILRRIINKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG-RNR 171
           +  L + L       +  ++            D  +  +D ++         L++  RN 
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMKS---------DYQMAMLD-QYAGHTN----LLKSTRNA 162

Query: 172 LLTEGYFDSSWCSSIEAQMAELGV-KINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
             T    D++     E   A L   ++   +++ +N LS    EY + E   H +LS +G
Sbjct: 163 YQTWRQADNNLKQLKENSAANLAQKQLLEYQIKELNELSIGEDEYEELEQE-HKRLSNSG 221

Query: 231 FLDGKFDQSFCALKE 245
            L     Q+   + E
Sbjct: 222 ELASTCQQAIELIYE 236


>gi|257468095|ref|ZP_05632191.1| ATP-binding protein involved in virulence-like protein
          [Fusobacterium ulcerans ATCC 49185]
 gi|317062380|ref|ZP_07926865.1| ABC transporter [Fusobacterium ulcerans ATCC 49185]
 gi|313688056|gb|EFS24891.1| ABC transporter [Fusobacterium ulcerans ATCC 49185]
          Length = 390

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-----QHTIFVGDNGVGKTNILEAIS 48
          +KIK + I   +   ++++ F+         +  G NG GKT +LE+I 
Sbjct: 1  MKIKSIEIENNKALKNIKINFEKENEILNTVVIAGSNGSGKTTLLESIW 49


>gi|213855294|ref|ZP_03383534.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 531

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              P+        +  EG   +  ++ + D RS   +    V +  
Sbjct: 57  TGATRADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDPRHRRRMIDFERLMR 167
           + EL + L       +  ++      +++  LD       +      H +      R + 
Sbjct: 117 LRELGQLLIQIHGQHTHQQLTK--PEQQKSLLDSYANEAALAQQMAAHYQLWHQSCRDLA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
              +   E    +        Q+ EL
Sbjct: 175 HHQQQSQERAARAELLQY---QLKEL 197


>gi|213052725|ref|ZP_03345603.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213424856|ref|ZP_03357606.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213647048|ref|ZP_03377101.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 569

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              P+        +  EG   +  ++ + D RS   +    V +  
Sbjct: 57  TGATRADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDPRHRRRMIDFERLMR 167
           + EL + L       +  ++      +++  LD       +      H +      R + 
Sbjct: 117 LRELGQLLIQIHGQHTHQQLTK--PEQQKSLLDSYANEAALAQQMAAHYQLWHQSCRDLA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
              +   E    +        Q+ EL
Sbjct: 175 HHQQQSQERAARAELLQY---QLKEL 197


>gi|221058216|ref|XP_002261616.1| DNA repair protein RAD50 [Plasmodium knowlesi strain H]
 gi|194247621|emb|CAQ41021.1| DNA repair protein RAD50, putative [Plasmodium knowlesi strain H]
          Length = 1804

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++ + I   R+Y    +  L F +  T+  G+NG GK+ I+E +     G
Sbjct: 4  LEKIGIQGIRSYGDEEAQELEFASPITVIYGNNGSGKSTIIECLKVSCTG 53


>gi|156546758|ref|XP_001605353.1| PREDICTED: similar to ATP-binding cassette sub-family A member 3,
           putative [Nasonia vitripennis]
          Length = 1660

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 11/92 (11%)

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
           Y  + +     S G+++ V +G+ L          G    L+LDE ++ LD + R  ++ 
Sbjct: 625 YDKRNVLPKTLSGGQKRRVCLGMAL---------VGDPGTLILDEPTSGLDPESRRVIWD 675

Query: 337 IVTDIGSQ--IFMTGTDKSVFDSLNETAKFMR 366
           I+  +  Q  I ++  D    D L +    + 
Sbjct: 676 ILLKMRGQKTILISTHDMEEADILGDRIAILH 707


>gi|146306051|ref|YP_001186516.1| SMC domain-containing protein [Pseudomonas mendocina ymp]
 gi|145574252|gb|ABP83784.1| SMC domain protein [Pseudomonas mendocina ymp]
          Length = 386

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L ++ +R+  SL L    +  +  G NG GK+N+  A+  L+            + R
Sbjct: 2  LHTLAVANYRSINSLILPLG-RLNLITGANGSGKSNLYRALRLLAETAQ--GGVVNALAR 58

Query: 67 IG--SPSFFSTFARVEGMEGLADISIKLETRDD 97
           G    SF++   ++       ++ ++   R +
Sbjct: 59 EGGLESSFWAGPEKISRRMLKGEVPVQGSPRQN 91


>gi|327334436|gb|EGE76147.1| putative RecF/RecN/SMC N domain protein [Propionibacterium acnes
          HL097PA1]
          Length = 868

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            RI  P   S    VE  
Sbjct: 60 KVRIAQPYGTSLQVVVEAE 78


>gi|314985924|gb|EFT30016.1| RecF/RecN/SMC protein [Propionibacterium acnes HL005PA2]
 gi|314989233|gb|EFT33324.1| RecF/RecN/SMC protein [Propionibacterium acnes HL005PA3]
          Length = 868

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            RI  P   S    VE  
Sbjct: 60 KVRIAQPYGTSLQVVVEAE 78


>gi|314968771|gb|EFT12869.1| RecF/RecN/SMC protein [Propionibacterium acnes HL037PA1]
          Length = 868

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            RI  P   S    VE  
Sbjct: 60 KVRIAQPYGTSLQVVVEAE 78


>gi|316936029|ref|YP_004111011.1| SMC domain-containing protein [Rhodopseudomonas palustris DX-1]
 gi|315603743|gb|ADU46278.1| SMC domain protein [Rhodopseudomonas palustris DX-1]
          Length = 429

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  L +S +R+   +RL       +  G NG GK+++  A+  L+
Sbjct: 46 ITRLAVSGYRSLRDVRLSLGP-LNVVTGANGTGKSSLYRALRLLA 89


>gi|269960485|ref|ZP_06174857.1| hypothetical protein VME_12410 [Vibrio harveyi 1DA3]
 gi|269834562|gb|EEZ88649.1| hypothetical protein VME_12410 [Vibrio harveyi 1DA3]
          Length = 580

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 3  NRIKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEA 46
           R +++ L+I  FR   +  + +  D    + VG N VGK++IL A
Sbjct: 4  PRPRLRKLSIKNFRCIGNTPVEIELDE-IVVLVGPNNVGKSSILRA 48


>gi|156848905|ref|XP_001647333.1| hypothetical protein Kpol_1018p2 [Vanderwaltozyma polyspora DSM
          70294]
 gi|156118019|gb|EDO19475.1| hypothetical protein Kpol_1018p2 [Vanderwaltozyma polyspora DSM
          70294]
          Length = 1211

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60
          + I  + I  F+ Y +  ++  F   + I +G NG GK+N   AI F+        +R  
Sbjct: 1  MYIHRIVIKGFKTYRNETVIDFFSPNYNIVIGSNGSGKSNFFAAIRFVLSDDYSNLKREE 60

Query: 61 YADVTRIGSPSFFSTFARV 79
             +   GS S  S    +
Sbjct: 61 RQGLIHQGSGSVMSASVEI 79



 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 13/122 (10%)

Query: 252  FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST--GEQKVV-LVGIFLAHARLIS 308
             + +        T        + V +  K     H     G QK V  + + LA      
Sbjct: 1069 EENKTRSKDKNSTESIYSGISISVSFNSKKNEQLHVEQLSGGQKTVCAIALILA-----I 1123

Query: 309  NTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMR 366
                 AP  L DEI A LD+  R A+  ++  +   +Q   T       D L    KF R
Sbjct: 1124 QMVDPAPFYLFDEIDAALDKQYRAAVADVIKSLSGNAQFICTT---FRTDMLQVADKFFR 1180

Query: 367  IS 368
            + 
Sbjct: 1181 VK 1182


>gi|154508473|ref|ZP_02044115.1| hypothetical protein ACTODO_00973 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798107|gb|EDN80527.1| hypothetical protein ACTODO_00973 [Actinomyces odontolyticus ATCC
           17982]
          Length = 569

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + EY + L      D+ +  T +      L +   D++  +A  S G++  + + + L  
Sbjct: 137 EAEYDRVLAAMTARDAWTIDTRLEQTLEALGLGGVDRSRALASLSPGQRARLRLALVLVE 196

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
                        L+LDE + HLD D R  L R + D    + MT  D++  +
Sbjct: 197 ---------RPNALILDEPTNHLDADGREYLTRAIDDWQGPVLMTSHDRAFIE 240


>gi|153207491|ref|ZP_01946191.1| DNA repair protein RecN [Coxiella burnetii 'MSU Goat Q177']
 gi|165918941|ref|ZP_02219027.1| DNA repair protein RecN [Coxiella burnetii RSA 334]
 gi|212218711|ref|YP_002305498.1| DNA repair protein [Coxiella burnetii CbuK_Q154]
 gi|120576622|gb|EAX33246.1| DNA repair protein RecN [Coxiella burnetii 'MSU Goat Q177']
 gi|165917338|gb|EDR35942.1| DNA repair protein RecN [Coxiella burnetii RSA 334]
 gi|212012973|gb|ACJ20353.1| DNA repair protein [Coxiella burnetii CbuK_Q154]
          Length = 556

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 80/278 (28%), Gaps = 50/278 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F    SL L FD   T+  G+ G GK+ I++A++ L+ G      +   + R
Sbjct: 2   LTHIHIKNFIVVESLSLDFDKGLTVLTGETGAGKSIIVDAVN-LALGE----RADTAIIR 56

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             +     S    +             +  D       +I     R    +N H     L
Sbjct: 57  KEADQCDISLCFDISNNSDAQAWLKAKDFADGFDCIVRRIIFPDGRSRSTINGHPCTQQL 116

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
           +              R F    +  I  +H                LL            
Sbjct: 117 I--------------REFA-HFILQIHGQH------------QHQTLLKRERQQQ----- 144

Query: 186 IEAQMAELGVKINIARVEM---------INALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
                A     ++  R +          +N L+        + +   ++       +   
Sbjct: 145 WLDNFAHHHELLDKIRQDYFQWKNLQTELNQLNEQAKNRDHELSL--LRYQFEELENANL 202

Query: 237 DQSFCALKEEYAKKLFDGRKM-DSMSRRTLIGPHRSDL 273
            +       +  ++L + + + + +++   +     ++
Sbjct: 203 QEGEWKTLSQQHQQLHNAQSLIEKLTQAIALTVQSDEI 240


>gi|56461189|ref|YP_156470.1| ATPase [Idiomarina loihiensis L2TR]
 gi|56180199|gb|AAV82921.1| Predicted ATPase, possibly involved in inorganic ion transport
           [Idiomarina loihiensis L2TR]
          Length = 863

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 10/167 (5%)

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
           I R ++I  + +L  E       P   L+   + +G       A  EE  K+    R   
Sbjct: 540 IRRHKVITRMKALGREC---STRPVSTLASQIYQNGVVTPLLEAFSEEL-KQFGFIRFSV 595

Query: 259 SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
               R   G  +  L+++   + +     S GEQ+ + +  FLA  +     +     ++
Sbjct: 596 KAQTRNRSGTQQLKLVIEEGGEPLVSKIASEGEQRCIAIAAFLAEMKADHRKS----AVI 651

Query: 319 LDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNETAK 363
            D+    L    R+ +   +       Q+ +   D   +  L E A+
Sbjct: 652 FDDPVNSLSHQWRSRVAERLVKESLLRQVIVFTHDIVFYKLLLEAAE 698


>gi|15639358|ref|NP_218807.1| chromosome segregation protein, putative [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025600|ref|YP_001933372.1| chromosome segregation protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|3322648|gb|AAC65355.1| chromosome segregation protein, putative [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018175|gb|ACD70793.1| possible chromosome segregation protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059759|gb|ADD72494.1| chromosome segregation protein SMC [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 941

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 21/160 (13%)

Query: 7   IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRASYA 62
           +K L +  F+++A  +R+ F    T  +G NG GK+N+++AI   L     R  R     
Sbjct: 4   LKTLEVFGFKSFADRVRVEFADGVTALLGPNGCGKSNVVDAIKWVLGEQSSRALRADRME 63

Query: 63  DVTRIGSP---SFFSTFARVEGMEGLADISIKLE--------TRDDRSVRCLQINDVVIR 111
           DV   G+    S     A +   +    +S+ +          R   S   L  N V ++
Sbjct: 64  DVIFNGTESRRSLNVAEASLTVCDEAGILSLDVPEILIKRRLYRSGESEYFLNGNAVRLK 123

Query: 112 VVDEL------NKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            + EL       K          +D+I S    ERR   +
Sbjct: 124 EIRELFWDTGIGKVAYSVMEQGKIDQILSNKPEERRYLFE 163


>gi|327448733|gb|EGE95387.1| RecF/RecN/SMC protein [Propionibacterium acnes HL043PA1]
          Length = 868

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            RI  P   S    VE  
Sbjct: 60 KVRIAQPYGTSLQVVVEAE 78


>gi|313794111|gb|EFS42131.1| RecF/RecN/SMC protein [Propionibacterium acnes HL110PA1]
 gi|313803232|gb|EFS44428.1| RecF/RecN/SMC protein [Propionibacterium acnes HL110PA2]
 gi|313839234|gb|EFS76948.1| RecF/RecN/SMC protein [Propionibacterium acnes HL086PA1]
 gi|314964007|gb|EFT08107.1| RecF/RecN/SMC protein [Propionibacterium acnes HL082PA1]
 gi|327457544|gb|EGF04199.1| RecF/RecN/SMC protein [Propionibacterium acnes HL092PA1]
          Length = 868

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            RI  P   S    VE  
Sbjct: 60 KVRIAQPYGTSLQVVVEAE 78


>gi|289425884|ref|ZP_06427636.1| RecF/RecN/SMC N-terminal domain protein [Propionibacterium acnes
          SK187]
 gi|289153660|gb|EFD02369.1| RecF/RecN/SMC N-terminal domain protein [Propionibacterium acnes
          SK187]
          Length = 868

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            RI  P   S    VE  
Sbjct: 60 KVRIAQPYGTSLQVVVEAE 78


>gi|241203462|ref|YP_002974558.1| chromosome segregation protein SMC [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857352|gb|ACS55019.1| chromosome segregation protein SMC [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 1153

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFNKLRLVGFKSFVEPTEFIIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  +  A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVALYLDNADRTAPAAFNDSDEIQVTRRIEREQGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR+ L+
Sbjct: 121 ESRAKDVQLLFADASTGARSPSMVGQGRIGELIQAKPQARRQLLE 165


>gi|167462747|ref|ZP_02327836.1| hypothetical protein Plarl_09320 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322384074|ref|ZP_08057794.1| hypothetical protein PL1_3267 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321151230|gb|EFX44527.1| hypothetical protein PL1_3267 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 542

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 88/283 (31%), Gaps = 43/283 (15%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + IK + I  +       L+F         GD+G GKT+ +EA+  +   +  R     +
Sbjct: 1   MHIKKIEIKNW--LGIKELLFSPGKMNKVSGDSGTGKTSFIEALEKIFTNKNRRT----E 54

Query: 64  VTRIGSPSFFSTFARVEGMEGLADIS--------IKLETRDDRSVRCL---QIND----- 107
           V R  +          +G++    I         +K E++   S        IN      
Sbjct: 55  VIRHDAGEAELFVELDDGLQTTRKIRSEKADYLKVKHESKAVSSTEAFLRKLINGDIFRP 114

Query: 108 -----VVIRVVDELNKHLRISWLVPSMDRIFSG--LSMERRRFLDRMVFAIDPRHRRRMI 160
                   +   E+  ++          + + G     + +  + +++  I+  +     
Sbjct: 115 IEFVQKNAKEQTEIILNMLQIDWTVDDIKAWFGEVPEADYQLHILQILKQIETGYYAERE 174

Query: 161 DFER---LMRGRNRLLTE----GYFDSSWCSSIEAQM------AELGVKINIARVEMINA 207
              R   L+R     +       Y    W      ++      AE   K       +I+ 
Sbjct: 175 SINREINLLRANIEGIKRDLPSNYDGEEWREVNLQELYKKLSDAEESNKRLEEAQTLIDG 234

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           LS  I +  ++      +  L         +S     E++ ++
Sbjct: 235 LSLRIDDIKRRMANASEEKRLDYSRQRDMLKSSITRLEDHIQR 277


>gi|163746143|ref|ZP_02153502.1| DNA repair protein RecN [Oceanibulbus indolifex HEL-45]
 gi|161380888|gb|EDQ05298.1| DNA repair protein RecN [Oceanibulbus indolifex HEL-45]
          Length = 556

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+IS+      L L F     +  G+ G GK+ +L+++ F+   RG      AD+ R
Sbjct: 2  LRGLDISDMLIIDRLELGFQPGLNVLTGETGAGKSILLDSLGFVLGWRG-----RADLVR 56

Query: 67 IGSPSFFST 75
           G+     T
Sbjct: 57 QGAAQGEVT 65


>gi|50843691|ref|YP_056918.1| putative ATPase involved in DNA repair [Propionibacterium acnes
          KPA171202]
 gi|295131782|ref|YP_003582445.1| RecF/RecN/SMC N-terminal domain protein [Propionibacterium acnes
          SK137]
 gi|50841293|gb|AAT83960.1| conserved protein, putative ATPase involved in DNA repair
          [Propionibacterium acnes KPA171202]
 gi|291377339|gb|ADE01194.1| RecF/RecN/SMC N-terminal domain protein [Propionibacterium acnes
          SK137]
 gi|313765132|gb|EFS36496.1| RecF/RecN/SMC protein [Propionibacterium acnes HL013PA1]
 gi|313811998|gb|EFS49712.1| RecF/RecN/SMC protein [Propionibacterium acnes HL083PA1]
 gi|313813920|gb|EFS51634.1| RecF/RecN/SMC protein [Propionibacterium acnes HL025PA1]
 gi|313817143|gb|EFS54857.1| RecF/RecN/SMC protein [Propionibacterium acnes HL059PA1]
 gi|313829243|gb|EFS66957.1| RecF/RecN/SMC protein [Propionibacterium acnes HL063PA2]
 gi|313832432|gb|EFS70146.1| RecF/RecN/SMC protein [Propionibacterium acnes HL007PA1]
 gi|313834137|gb|EFS71851.1| RecF/RecN/SMC protein [Propionibacterium acnes HL056PA1]
 gi|314916862|gb|EFS80693.1| RecF/RecN/SMC protein [Propionibacterium acnes HL005PA4]
 gi|314919040|gb|EFS82871.1| RecF/RecN/SMC protein [Propionibacterium acnes HL050PA1]
 gi|314921130|gb|EFS84961.1| RecF/RecN/SMC protein [Propionibacterium acnes HL050PA3]
 gi|314932524|gb|EFS96355.1| RecF/RecN/SMC protein [Propionibacterium acnes HL067PA1]
 gi|314956247|gb|EFT00619.1| RecF/RecN/SMC protein [Propionibacterium acnes HL027PA1]
 gi|314958745|gb|EFT02847.1| RecF/RecN/SMC protein [Propionibacterium acnes HL002PA1]
 gi|314975097|gb|EFT19192.1| RecF/RecN/SMC protein [Propionibacterium acnes HL053PA1]
 gi|314977508|gb|EFT21603.1| RecF/RecN/SMC protein [Propionibacterium acnes HL045PA1]
 gi|314985886|gb|EFT29978.1| RecF/RecN/SMC protein [Propionibacterium acnes HL005PA1]
 gi|315081440|gb|EFT53416.1| RecF/RecN/SMC protein [Propionibacterium acnes HL078PA1]
 gi|315096862|gb|EFT68838.1| RecF/RecN/SMC protein [Propionibacterium acnes HL038PA1]
 gi|315100077|gb|EFT72053.1| RecF/RecN/SMC protein [Propionibacterium acnes HL059PA2]
 gi|315102762|gb|EFT74738.1| RecF/RecN/SMC protein [Propionibacterium acnes HL046PA1]
 gi|315107315|gb|EFT79291.1| RecF/RecN/SMC protein [Propionibacterium acnes HL030PA1]
 gi|315110535|gb|EFT82511.1| RecF/RecN/SMC protein [Propionibacterium acnes HL030PA2]
 gi|327333026|gb|EGE74758.1| putative RecF/RecN/SMC N domain protein [Propionibacterium acnes
          HL096PA2]
 gi|327449072|gb|EGE95726.1| RecF/RecN/SMC protein [Propionibacterium acnes HL043PA2]
 gi|327455550|gb|EGF02205.1| RecF/RecN/SMC protein [Propionibacterium acnes HL087PA3]
 gi|327456207|gb|EGF02862.1| RecF/RecN/SMC protein [Propionibacterium acnes HL083PA2]
 gi|328756785|gb|EGF70401.1| RecF/RecN/SMC protein [Propionibacterium acnes HL087PA1]
 gi|328759068|gb|EGF72684.1| RecF/RecN/SMC protein [Propionibacterium acnes HL025PA2]
 gi|328762176|gb|EGF75672.1| putative RecF/RecN/SMC N domain protein [Propionibacterium acnes
          HL099PA1]
          Length = 868

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            RI  P   S    VE  
Sbjct: 60 KVRIAQPYGTSLQVVVEAE 78


>gi|15966797|ref|NP_387150.1| hypothetical protein SMc02491 [Sinorhizobium meliloti 1021]
 gi|307301625|ref|ZP_07581384.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
 gi|307316351|ref|ZP_07595795.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|15076069|emb|CAC47623.1| Hypothetical protein SMc02491 [Sinorhizobium meliloti 1021]
 gi|306898191|gb|EFN28933.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306903323|gb|EFN33912.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
          Length = 378

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-SPGRGFRRASYAD 63
           + ++ +    +R+  S+R+   A   +F+G+NGVGK+N+  A+  + +  RG      A+
Sbjct: 1   MMLRSMFAENYRSLRSIRMDL-AGVNLFIGENGVGKSNLYRALQLVQAAVRGHLAREIAE 59

Query: 64  ---VT--------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
              +         R+G P+     A +   E       ++E                   
Sbjct: 60  EGGMVSAIWSGPQRVGKPARIRLDAELIDEERAITFRYRIEAGFRPPKAAAGFAHEPQVK 119

Query: 113 VDEL 116
            +EL
Sbjct: 120 EEEL 123


>gi|313819089|gb|EFS56803.1| RecF/RecN/SMC protein [Propionibacterium acnes HL046PA2]
 gi|313821633|gb|EFS59347.1| RecF/RecN/SMC protein [Propionibacterium acnes HL036PA1]
 gi|313823769|gb|EFS61483.1| RecF/RecN/SMC protein [Propionibacterium acnes HL036PA2]
 gi|314926109|gb|EFS89940.1| RecF/RecN/SMC protein [Propionibacterium acnes HL036PA3]
 gi|314960949|gb|EFT05050.1| RecF/RecN/SMC protein [Propionibacterium acnes HL002PA2]
 gi|315084918|gb|EFT56894.1| RecF/RecN/SMC protein [Propionibacterium acnes HL027PA2]
 gi|315087449|gb|EFT59425.1| RecF/RecN/SMC protein [Propionibacterium acnes HL002PA3]
 gi|328757674|gb|EGF71290.1| RecF/RecN/SMC protein [Propionibacterium acnes HL020PA1]
          Length = 868

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            RI  P   S    VE  
Sbjct: 60 KVRIAQPYGTSLQVVVEAE 78


>gi|313771600|gb|EFS37566.1| RecF/RecN/SMC protein [Propionibacterium acnes HL074PA1]
          Length = 868

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            RI  P   S    VE  
Sbjct: 60 KVRIAQPYGTSLQVVVEAE 78


>gi|166710093|ref|ZP_02241300.1| hypothetical protein Xoryp_01070 [Xanthomonas oryzae pv.
          oryzicola BLS256]
          Length = 74

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++I+ + I  FR + + +L    +  + VG NG  K+ + +  SFL
Sbjct: 1  MQIESIEIKNFRLFRNAKLTHVPRLCVLVGANGTAKSTLFDLFSFL 46


>gi|260905247|ref|ZP_05913569.1| DNA repair protein RecN [Brevibacterium linens BL2]
          Length = 567

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 21/156 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + ++I  L +      A   +      T+  G+ G GKT  + A+S L       R  
Sbjct: 1   MISELRISHLGV-----IAEAEVELSTGFTVVTGETGAGKTMFVSALSLLMG-----RKV 50

Query: 61  YADVTRIGSPSF----------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            + V R G+              S  +R+E   G A+    +     +  R         
Sbjct: 51  GSGVVRKGAEKAEVEGIFSSVTDSVRSRIEEAGGSAEDEAIISRTVAQKGRARATAGGRT 110

Query: 111 RVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLD 145
             +  L +    +  L    +++      ++R+ LD
Sbjct: 111 VPISVLTEISDELITLHGQSEQLRLKGPAQQRQLLD 146


>gi|85859153|ref|YP_461355.1| DNA repair protein recN [Syntrophus aciditrophicus SB]
 gi|85722244|gb|ABC77187.1| DNA repair protein recN [Syntrophus aciditrophicus SB]
          Length = 560

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L I  F    +L + FD    I  G+ G GK+ I+ AI  L   R     +  ++ R
Sbjct: 2  LAQLKIRNFALIDALDVSFDRGLNILSGETGAGKSIIIGAIGLLLGDR-----ASTEMIR 56

Query: 67 IGSPSFFS 74
           G+ +   
Sbjct: 57 SGAEAAEV 64


>gi|71534101|gb|AAH99955.1| Smc6 protein [Mus musculus]
          Length = 757

 Score = 46.1 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 54  IESIQLRNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLK 113

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
              + G  S              ADISI L  R D + R     D ++
Sbjct: 114 GFVKAGQNS--------------ADISITLRNRGDDAFRANVYGDSIV 147


>gi|318081848|ref|ZP_07989157.1| recombination protein F [Streptomyces sp. SA3_actF]
          Length = 74

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372
            P+L+LD++ A LD  +R+ L   V   G Q+ +T   ++ V   L        +S    
Sbjct: 15  EPVLILDDVFAELDARRRDRLAEHVAS-GEQVLVTAAVEEDVPAPL--KGTRYAVSEGTV 71


>gi|296532810|ref|ZP_06895487.1| DNA repair protein RecN [Roseomonas cervicalis ATCC 49957]
 gi|296266871|gb|EFH12819.1| DNA repair protein RecN [Roseomonas cervicalis ATCC 49957]
          Length = 556

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 66/206 (32%), Gaps = 24/206 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I +      L L   A  T+  G+ G GK+ +L+++  L+ G+     + A + R
Sbjct: 2   LTSLAIRDVVLIERLDLALGAGLTVLTGETGAGKSILLDSLG-LALGQ----RAEAGMVR 56

Query: 67  IGSPSFFSTFAR-------------VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G      T                 +G+E   ++ ++   + D   R    ND  + V 
Sbjct: 57  AGQAQASVTACFHLPDGHPANALLAEQGIEAEDELVLRRVVQADGRSRAFA-NDEPVGVA 115

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF---AIDPRH--RRRMIDFERLMRG 168
                   +  +    D++           LD         +      R     ER ++ 
Sbjct: 116 LLRRLGALLVEVQGQHDQVGLADPASHAGLLDAFGGLEAQRNRVSDTYRAWRAAERALKD 175

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELG 194
               + +   D  W      +++ L 
Sbjct: 176 AQEAIAQAQRDEEWLRHAVDELSALS 201


>gi|282897786|ref|ZP_06305784.1| hypothetical protein CRD_00707 [Raphidiopsis brookii D9]
 gi|281197326|gb|EFA72224.1| hypothetical protein CRD_00707 [Raphidiopsis brookii D9]
          Length = 372

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 5  IK-IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +K +  + I +FR    L L    +  + VG N  GKT++LEA+   S
Sbjct: 1  MKSLDSVIIHQFRGIRDLELKDLGRINLLVGINNSGKTSVLEALQIYS 48


>gi|260460186|ref|ZP_05808438.1| ATP-binding protein involved in virulence-like protein
           [Mesorhizobium opportunistum WSM2075]
 gi|259033831|gb|EEW35090.1| ATP-binding protein involved in virulence-like protein
           [Mesorhizobium opportunistum WSM2075]
          Length = 442

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 49/219 (22%)

Query: 5   IKIKFLNISEFRNYASLRLVFD---------------------AQHTIFVGDNGVGKTNI 43
           + ++ L +S  R+ A  RL                            + +G NG GK+ +
Sbjct: 1   MYVRSLKVSNLRSVAKGRLDLVYPGRACDGPFQKGFPNWPPKLPNVNVLLGINGAGKSTM 60

Query: 44  LEAISFLSP------GRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97
           L+AI+  +         GFR  +   + R  +       A ++    +    I       
Sbjct: 61  LDAIALAAMSPVVSESSGFRPYA---LIRRVASGDAPKTASIDAEIVVHPQDIV--DAPK 115

Query: 98  RSVRCLQINDVVIRVVDELNKHLRISWLVP---------SMDRIFSGLSMERRRFLDRMV 148
           +    ++     +    +L     +    P         S   +  G    RR   +   
Sbjct: 116 KRTEVIREIGATVERRGDLEVLKAVQHPDPLWEGMFKDQSPAFLMVGYGATRRVETN--- 172

Query: 149 FAIDPRHRRRMIDFERLMR-GRNRLLTEGYFDSSWCSSI 186
             +D      +    R++R  R   L E +F     SS 
Sbjct: 173 AQVD----EALRSRTRVLRYERIASLFEDHFTLRPLSSW 207


>gi|284036061|ref|YP_003385991.1| ATPase [Spirosoma linguale DSM 74]
 gi|283815354|gb|ADB37192.1| ATPase-like protein [Spirosoma linguale DSM 74]
          Length = 366

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRG 55
           + +  I  F+ + S  +    Q  + VGDN VGKT++LEA++F   L   R 
Sbjct: 5  HLTYFKIENFKRFDSFEMSNLGQFNLIVGDNNVGKTSVLEALTFDENLVYWRS 57


>gi|92118332|ref|YP_578061.1| hypothetical protein Nham_2830 [Nitrobacter hamburgensis X14]
 gi|91801226|gb|ABE63601.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 1152

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 11/118 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA--QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           ++I+ L +  +  +A   L F       +  G N  GKT+ L AI  L  G G R     
Sbjct: 1   MRIERLVLERYGIFADHTLSFHPDAALHVVYGANEAGKTSALSAIGDLLFGFGARTPYDF 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
              R  S +      RV G    ++  + +  R  +  +   I+     + D+    L
Sbjct: 61  ---RHDSKTL-----RVGGAFRHSNGQV-IAARRRKGNKNTLIDAADQPLPDDWLASL 109


>gi|46138859|ref|XP_391120.1| hypothetical protein FG10944.1 [Gibberella zeae PH-1]
          Length = 1493

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            RI +  L +  F++YA    +  F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 204 PRIVLTHLILENFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 260

Query: 61  YAD 63
              
Sbjct: 261 MRQ 263


>gi|289615285|emb|CBI58052.1| putative SMC4/CSM1 protein [Sordaria macrospora]
          Length = 1644

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 10/91 (10%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            RI I  L +  F++YA    +  F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 300 PRIVITNLVLINFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 356

Query: 61  YAD-----VTRIGSPSFFSTFARVEGMEGLA 86
                   +    +      +  VE      
Sbjct: 357 MRQGKISALIHNSAQFPDLNYCEVEVHFQEV 387


>gi|255036409|ref|YP_003087030.1| ABC transporter-like protein [Dyadobacter fermentans DSM 18053]
 gi|254949165|gb|ACT93865.1| ABC transporter related [Dyadobacter fermentans DSM 18053]
          Length = 325

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 17/101 (16%)

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           K       S GE++   +   +A             +LLLDE  AHLD   R  L   + 
Sbjct: 133 KDRKAKLLSGGEKQRTAIAKAIAEL---------PDVLLLDEPFAHLDNHNRRVLADAIE 183

Query: 340 DIGSQ-----IFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
            +  Q     IF+T       D+L  + +   + + + + I
Sbjct: 184 RLRRQQKMSCIFVT---HEAADALAWSDRIAVLRDGKIVQI 221


>gi|167461701|ref|ZP_02326790.1| putative old protein [Paenibacillus larvae subsp. larvae
          BRL-230010]
 gi|322384018|ref|ZP_08057746.1| hypothetical protein PL1_2074 [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321151385|gb|EFX44574.1| hypothetical protein PL1_2074 [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 626

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 5  IKIKFLNISEFRNY---ASLRLVF----DAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++I  L I  F+N       ++VF    D+     +G+N +GK+++LEA+    PG
Sbjct: 1  MRINELIIKNFKNIGTEKPCKIVFPVEDDSDLISIIGENNIGKSSVLEALRLFMPG 56


>gi|154498039|ref|ZP_02036417.1| hypothetical protein BACCAP_02020 [Bacteroides capillosus ATCC
           29799]
 gi|150273029|gb|EDN00186.1| hypothetical protein BACCAP_02020 [Bacteroides capillosus ATCC
           29799]
          Length = 568

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 65/202 (32%), Gaps = 22/202 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I       S  + FDA      G+ G GK+ +++AI  +    G R +    + R
Sbjct: 5   LSLLHIENIAVIESADIRFDAGFNALTGETGAGKSIVIDAIGAVI---GERTSRD--LIR 59

Query: 67  IGSPSFFSTFARV------------EGMEGLADISIKLETRDDRSVRCLQIND-VVIRVV 113
            G+ S                    EG +   ++ I+ E   D    C      + +  +
Sbjct: 60  TGAKSALVEAVFTDLPKLSWFEENGEGPDEDGNLIIRREIHPDGKNTCRLGGRLLTVSQL 119

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNR 171
             L   L          ++          +LD      +    ++        + R  + 
Sbjct: 120 KALGSQLVNIHGQHDGQQLLDE--RCHLSYLDSFGGTGEALADYQAAYSALTAIRREMDT 177

Query: 172 LLTEGYFDSSWCSSIEAQMAEL 193
           L  +    +    S+  Q+AEL
Sbjct: 178 LRMDEAERARRIDSLNYQIAEL 199


>gi|148269526|ref|YP_001243986.1| hypothetical protein Tpet_0384 [Thermotoga petrophila RKU-1]
 gi|147735070|gb|ABQ46410.1| hypothetical protein Tpet_0384 [Thermotoga petrophila RKU-1]
          Length = 758

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 60/387 (15%), Positives = 124/387 (32%), Gaps = 58/387 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ +++  F  + +      +   I  G N  GKT +   I +   G         ++
Sbjct: 1   MKIERVHVEGFGKFENFSFPLKSGLNIIFGGNAAGKTTLANFIRYCLTGE------LPEL 54

Query: 65  --------TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                    R G     ++  RVE  +G  D  +   T          +N    +V   L
Sbjct: 55  ENYRPWFSNRFGG-YLETSEGRVEFGQGRLDPELFSFTSFISEGVDNTLNGSK-KVASFL 112

Query: 117 NKHLRISWLVPSMDRIFSGL---SMERRRFLDRMVFAIDPRHRRRMIDFER----LMRGR 169
            +  R       ++RI +      M++ + L+  +  +  R      +  R    +++ +
Sbjct: 113 MESYRNRPEAVELERILNEDFSVLMKKTKELEAEISNLKER-VEAWKEKRRSLLLVLKRK 171

Query: 170 NRLLTEGYFDSSWCSSI--------EAQMAELGVKINIARVEMI---NALSSLIMEYVQK 218
             L  +                     +++ +  +IN  + E++     L  +  +    
Sbjct: 172 KELSRDLQEKRRLLEEEINRFESEKSERLSSIEARINEMKAELLRVEKELEEIERKTAVS 231

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
           E      + +   LD   ++    L++E        +  +   +         D  V   
Sbjct: 232 EEKVREAIEIAQKLDYLRERG-KELEKEIESLEEKSKDTEERLKTI-----MKDFSVSSL 285

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           +           E K+ L  + L    L+ N         L+EI  HL E  R  +   +
Sbjct: 286 E-----------ELKLKLENMKL-QIELVENEQKAK----LNEIIGHLREPLRE-IDEKL 328

Query: 339 TDIGSQIFMTGTDKSVFDSLNETAKFM 365
            +  ++I  TG D   FD      +  
Sbjct: 329 EETQAKIENTGDDMKRFDKTLSIFRIF 355


>gi|42783642|ref|NP_980889.1| hypothetical protein BCE_4596 [Bacillus cereus ATCC 10987]
 gi|42739571|gb|AAS43497.1| hypothetical protein BCE_4596 [Bacillus cereus ATCC 10987]
          Length = 879

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 7  IKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  +N+  FR Y S ++ F           +  G NG GKT +L+AI +   G
Sbjct: 8  ISEVNMENFRGYKSQKVKFFEEQSDKTGVVLISGPNGYGKTTLLDAIEWCLTG 60



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 93/286 (32%), Gaps = 35/286 (12%)

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
            EL +   I + +PS+     G +M    FL   + +      + + +F R  +    LL
Sbjct: 578 RELVEKDDIIYKIPSLID--KGKAMHLEEFLALDIKSKRECINQVLKEFGRKTKEVQNLL 635

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMI----NALSSLIMEYVQKENFPH------ 223
            +          ++ ++  L   +       +      L     E  +  N         
Sbjct: 636 GDRQVKDINIDILKVKLEILHSIMKELNSNYLIATKQKLFEKAKEDYETYNLELVSKQNA 695

Query: 224 -IKLSLTGF----LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI-----GPHRSDL 273
             KL         +   +D+   +   E  +K++      +  +            ++ +
Sbjct: 696 LEKLKYLSKQIKKIRTDWDKKIASQINEPLRKIYKRLNRHTNIQTIDFMTEGRTTQKAKM 755

Query: 274 IVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
            V   D  + I    STG+  +V + IFL  A  +           +D+    LD+    
Sbjct: 756 TVKVNDTEVFIPNILSTGQLSIVSLAIFLTIA--MGQKENPFRCYFMDDPIQTLDDLNVL 813

Query: 333 ALFRIVTDIGS----------QIFMTGTDKSVFDSLNETAKFMRIS 368
           +   ++    +          Q+F+T  D+S    ++   ++  ++
Sbjct: 814 SFVDLIRTELTNDNQENRFMDQLFITTCDESFEKLISHKMRYFNVN 859


>gi|315078347|gb|EFT50384.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
          Length = 854

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            RI  P   S    VE  
Sbjct: 60 KVRIAQPYGTSLQVVVEAE 78


>gi|284007904|emb|CBA73847.1| conserved hypothetical protein [Arsenophonus nasoniae]
          Length = 190

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + ++ + IS FR    L L  D   T+ +G+N  GK+++L+A++ L   R         +
Sbjct: 1  MYLQQVEISGFRGINRLSLTLDHN-TVLIGENTWGKSSLLDALTILLSPR-------QPL 52

Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98
           +     F    A  E +  L  I +  E + + 
Sbjct: 53 YQFNQHDFHHLVATDEQINNLQIILVFCENQPNN 86


>gi|218462074|ref|ZP_03502165.1| chromosome partition protein [Rhizobium etli Kim 5]
          Length = 445

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFNKLRLVGFKSFVEPTEFIIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++  E  A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVALYLDNGERTAPAAFNDADEIQVTRRIEREQGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR+ L+
Sbjct: 121 ESRAKDVQLLFADASTGARSPSMVGQGRIGELIQAKPQARRQLLE 165


>gi|182419465|ref|ZP_02950717.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237666911|ref|ZP_04526896.1| conserved hypothetical protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
 gi|182376796|gb|EDT74368.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237658110|gb|EEP55665.1| conserved hypothetical protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
          Length = 662

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 5  IK---IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K   I  + +  +RN+    +    +  + +G+N VGKTN ++A+  +
Sbjct: 1  MKSPYISKVILKNYRNFKDCTVNLSHK-GVIIGENNVGKTNFIKALQLI 48


>gi|16761536|ref|NP_457153.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143007|ref|NP_806349.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|289824181|ref|ZP_06543776.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25300521|pir||AG0834 DNA repair protein [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16503837|emb|CAD05862.1| DNA repair protein [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29138640|gb|AAO70209.1| DNA repair protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 553

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              P+        +  EG   +  ++ + D RS   +    V +  
Sbjct: 57  TGATRADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDPRHRRRMIDFERLMR 167
           + EL + L       +  ++      +++  LD       +      H +      R + 
Sbjct: 117 LRELGQLLIQIHGQHTHQQLTK--PEQQKSLLDSYANEAALAQQMAAHYQLWHQSCRDLA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
              +   E    +        Q+ EL
Sbjct: 175 HHQQQSQERAARAELLQY---QLKEL 197


>gi|114319840|ref|YP_741523.1| chromosome segregation protein SMC [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226234|gb|ABI56033.1| chromosome segregation protein SMC [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 1168

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 61/359 (16%), Positives = 113/359 (31%), Gaps = 71/359 (19%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++K + +S F+++    ++         VG NG GK+NI++A+ ++   S  R  R  S
Sbjct: 1   MRLKKIKLSGFKSFVDPTQVAMPGDLVAVVGPNGCGKSNIIDAVRWVMGESSARHLRGQS 60

Query: 61  YADVTRIGSPSFF-STFARVE----------GMEGLADISIKLETRDDRSVR-CLQINDV 108
            ADV   GS +    + A VE          G +      I +  + +R  +    +N  
Sbjct: 61  MADVIFNGSTARKPVSHASVELVFDNSDGRLGGQYAQYGEIAVRRQVNREGQSQYFLNGT 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF----------- 149
             R  D         L            + R+      E R +L+               
Sbjct: 121 RCRRKDITDVFLGTGLGPRGYTIIEQGMISRVIEARPEELRVYLEEAAGISIYKERRRET 180

Query: 150 ------------AIDPRHRRRMIDFERLMRG-----RNRLLTEGYFD----------SSW 182
                        ++          E+L R      R R L +   D          +S 
Sbjct: 181 ERRIRDTRENLERLEDVREEVRRQLEKLRRQAEVARRYRELKQAERDTRAELITLRQASL 240

Query: 183 CSSIEAQMAELGVKINIARVEM---------INALSSLIMEYVQKENFPHIKLSLTGFLD 233
            + +E Q A +  K+N     +         I A+ +   E   + N         G   
Sbjct: 241 KAQLEEQEAVIAAKVNAREFALATQRQAEREIEAIRATQGEAGDRLNAIQADYYGVGSEI 300

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
            + +Q     +E   K+L + R  +   +    G       +   ++ +        EQ
Sbjct: 301 ARIEQQISHRRELRDKQLRELRDSEGEVQALERGLEEDREKLALLEERLEALQPEQEEQ 359


>gi|326916539|ref|XP_003204564.1| PREDICTED: structural maintenance of chromosomes protein 6-like
           [Meleagris gallopavo]
          Length = 1096

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 56/150 (37%), Gaps = 23/150 (15%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     +G+NG GK+++L A+     G+     R +S  
Sbjct: 56  IERIQLKNFMCHSMLGPFQFGSNLNFIIGNNGSGKSSVLTALIVGLGGKATATNRGSSLK 115

Query: 63  DVTRIGSPSF-FSTFARVEGME--------GLADISIKLETRDDRSVRCLQINDVVI-RV 112
              + G  S   S   + +G +            ++  +     R+ R    +  VI   
Sbjct: 116 LFVKSGESSADISVTLQNQGRDAFKPELYGDSIIVNTHINLEGSRTYRLKSKSGTVISSK 175

Query: 113 VDELNKHL---------RISWLVPSMDRIF 133
            +EL   L          +S L   M ++F
Sbjct: 176 KEELLGMLDHFNIQVENPVSVLTQEMSKLF 205


>gi|302840259|ref|XP_002951685.1| hypothetical protein VOLCADRAFT_105201 [Volvox carteri f.
          nagariensis]
 gi|300262933|gb|EFJ47136.1| hypothetical protein VOLCADRAFT_105201 [Volvox carteri f.
          nagariensis]
          Length = 1241

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 6  KIKFLNISEFRNY-ASLRLVFDAQHTI--FVGDNGVGKTNILEAISFL--SPGRGFRRAS 60
          ++  + +  F+++  S   V      +   +G NG GK+N+LEA+ F    P    R  +
Sbjct: 17 QLSSIRVRGFKSFGPSWVTVPLPNTNLVGILGPNGSGKSNLLEAVLFAVGCPATSLRVRT 76

Query: 61 YADVTRIGSPSF 72
            ++    +   
Sbjct: 77 LRELASSDAAHA 88


>gi|193215680|ref|YP_001996879.1| DNA repair protein RecN [Chloroherpeton thalassium ATCC 35110]
 gi|193089157|gb|ACF14432.1| DNA repair protein RecN [Chloroherpeton thalassium ATCC 35110]
          Length = 573

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 18/113 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  F     L + F++   I  G+ G GK+ ++ A+S +    G R +    V R
Sbjct: 2   LKTLYIKNFALIEELSIEFNSGLNIITGETGAGKSILIGALSLVL---GERGSVD--VIR 56

Query: 67  IGSPSFF-------------STFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            G                  S   +   ++   ++ ++ E       RC   +
Sbjct: 57  KGEDKAIIECIIDVSNNKQVSDLLKNNEIDYSDEMILRREISRKGQSRCFIND 109


>gi|186474004|ref|YP_001861346.1| putative GTP-binding protein [Burkholderia phymatum STM815]
 gi|184196336|gb|ACC74300.1| putative GTP-binding protein [Burkholderia phymatum STM815]
          Length = 878

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 76/210 (36%), Gaps = 15/210 (7%)

Query: 160 IDFERLM-RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
            +++  + R RN  L     ++   + +  ++A+    I  A         + +      
Sbjct: 671 NEYQHHLERQRNVGLLRTRLETLGGTELGVRLAQTAAAIEQA-----EMRRAELRMRADA 725

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
            +       L   L  + D +   L++    ++    +    +    +    S + +   
Sbjct: 726 LSL------LESVLVQERDTAVATLRKPLTDRVNHYLRRVFPTGELAVDDSLSPVGLTRE 779

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
                    S G Q+ + + + LA+A L+ +  G   +LL D+   H DE +R ++ R +
Sbjct: 780 TADEAFESLSYGTQEQLGLLVRLAYADLLKDA-GKPTLLLFDDAIVHTDEARRESIKRAL 838

Query: 339 TDIGS--QIFMTGTDKSVFDSLNETAKFMR 366
            D  +  QI +     S +  L    + + 
Sbjct: 839 LDAATRHQILVFTCHPSAWSDLGVKQRRLE 868



 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI 47
          + ++ + I  FR      +    ++   +  G N  GK+ I EA+
Sbjct: 1  MILESITIQNFRKLTDRIVIDGLESGLNLISGPNEAGKSTIAEAV 45


>gi|310642657|ref|YP_003947415.1| DNA repair protein recn [Paenibacillus polymyxa SC2]
 gi|309247607|gb|ADO57174.1| DNA repair protein RecN [Paenibacillus polymyxa SC2]
          Length = 572

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 68/202 (33%), Gaps = 26/202 (12%)

Query: 16  RNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS--- 69
           RN     ++ + F     +  G+ G GK+ I++A+  ++ GRG      AD+ R G    
Sbjct: 8   RNLAVVEAVDVHFYKGFHVLSGETGAGKSIIIDALGLIAGGRG-----SADLVRYGCDKA 62

Query: 70  --PSFFSTFAR------VEGMEGLADISIKLETRDD---RSVRCLQINDVVIRV--VDEL 116
              + F    +      +E     A+    L  R +   +     +IN  ++ +  + E+
Sbjct: 63  EMEALFELPVKHPVWNTLEEQGIKANPEEHLLIRRELTVQGKSSSRINGQMVNLTMLREV 122

Query: 117 NKHLRISWLVPSMDRIFSGLS--MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            + L           +            F D ++  +   +R R   F +  +    L +
Sbjct: 123 GEQLVNIHGQHEHQSLLRADRHLALLDTFGDSVIGPVKALYRERYNAFVKAEKEVRELQS 182

Query: 175 EGYFDSSWCSSIEAQMAELGVK 196
                         Q+ E+   
Sbjct: 183 SSQKAYQLLDMYRFQLEEIAAA 204


>gi|156089495|ref|XP_001612154.1| SMC family, C-terminal domain containing protein [Babesia bovis]
 gi|154799408|gb|EDO08586.1| SMC family, C-terminal domain containing protein [Babesia bovis]
          Length = 1346

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYA 62
           I  + +  F++Y    +   F  + T  VG NG GK+N+++A+ F+     +  R    +
Sbjct: 45  INKVVLRNFKSYGGTTVIGPFHKRFTSIVGPNGSGKSNVIDAMLFVFGFRAKQMRFDKLS 104

Query: 63  DVTRIGSP 70
           D+      
Sbjct: 105 DLIHNSQA 112


>gi|154488631|ref|ZP_02029480.1| hypothetical protein BIFADO_01938 [Bifidobacterium adolescentis
           L2-32]
 gi|154082768|gb|EDN81813.1| hypothetical protein BIFADO_01938 [Bifidobacterium adolescentis
           L2-32]
          Length = 568

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 82/276 (29%), Gaps = 44/276 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I       S  +      T   G+ G GK+ +L AI  +S G             
Sbjct: 2   LEELEIHNLGPIRSALIAPAGGMTAITGETGAGKSMLLSAIRLISGGPS-----DGGRVS 56

Query: 67  IGSPSFFSTFA------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           +G+   ++                 E      D  + L  +   S R   +         
Sbjct: 57  VGASEAWAQGVFEVASSPAAVAAAHEAGFEPEDGELFLSRKVPASGRSRSMLSGRSVPRS 116

Query: 115 ELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDR----------------MVFAIDPRHRR 157
            L      +  +    D++    S  +R FLDR                 + A+D R   
Sbjct: 117 VLGSIAAELVTIHGQADQLRIASSARQREFLDRYAGDDVALVAYGKAWNALRAMDER-LE 175

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
           R+   E  MR +   L E     +       +MAEL      AR + I        E  +
Sbjct: 176 RLSSQESSMRQQADYLRESIERINRIDPQPGEMAEL-----RARRDRIE----NAAEIAE 226

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
             N     L  +  +D     S   L +  ++ L  
Sbjct: 227 GVNRALSALDASQVVDDVESSSATDLIDRASQALRA 262


>gi|74189359|dbj|BAE22709.1| unnamed protein product [Mus musculus]
          Length = 767

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 54  IESIQLRNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLK 113

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
              + G  S              ADISI L  R D + R     D ++
Sbjct: 114 GFVKAGQNS--------------ADISITLRNRGDDAFRANVYGDSIV 147


>gi|114046339|ref|YP_736889.1| hypothetical protein Shewmr7_0833 [Shewanella sp. MR-7]
 gi|113887781|gb|ABI41832.1| conserved hypothetical protein [Shewanella sp. MR-7]
          Length = 390

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L IS +R    + L    +  + +G NG GK+N+ +A+  L+
Sbjct: 2  LTTLAISNYRTLREIVLPLG-RLNLVIGANGSGKSNLYKALRLLA 45


>gi|226946323|ref|YP_002801396.1| DNA repair protein RecN [Azotobacter vinelandii DJ]
 gi|226721250|gb|ACO80421.1| DNA repair protein RecN [Azotobacter vinelandii DJ]
          Length = 557

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 52/177 (29%), Gaps = 27/177 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  +     L L  DA  T+  G+ G GK+ +L+A+  L+ G      + +   R
Sbjct: 2   LVHLSIHNYAIVEHLDLELDAGMTVITGETGAGKSIMLDALG-LALGD----RTDSGAVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV-- 112
            G+                  A +   +   +    L        R    IN        
Sbjct: 57  PGADRADILASFDLTEIPEARAWLAERDLEREGPCILRRVITAEGRSRAYINGSPCPQGD 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
           +  L + L           +    +   RR LD             +    RL   R
Sbjct: 117 LRALGELLIDVHSQHEHQSLLKNDTQ--RRLLDEYAG------ASDLARQVRLAAQR 165


>gi|332981373|ref|YP_004462814.1| DNA repair protein RecN [Mahella australiensis 50-1 BON]
 gi|332699051|gb|AEE95992.1| DNA repair protein RecN [Mahella australiensis 50-1 BON]
          Length = 574

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 68/211 (32%), Gaps = 19/211 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I          + FD    I  G+ G GK+ I++AI+ L   R     +  D  R
Sbjct: 2   LKELIIENLVLIDYAHIAFDQGLNILTGETGAGKSVIIDAIALLLGER-----ADKDAIR 56

Query: 67  IGS-----PSFFSTFARVE--------GMEGLADISIKLETRDDRSVRCL-QINDVVIRV 112
            G         F      E        G++   D  + L    + S + + +IN   + +
Sbjct: 57  SGCDKGRIEGLFDITGYTEVKDLLDLYGIDLSDDEYLILSRELNASGKNVCRINGAAVPL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
               +   R+  L           +     FLDR         +  +  +    +  N  
Sbjct: 117 SMLKDISSRLINLHSQASHYALLDAQNHGLFLDRFAGVEVEELKSEISKYYNKWQKLNAE 176

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           L++   D          ++    +I  AR+ 
Sbjct: 177 LSKWSADPQIRQREMDLLSYQINEIEAARLR 207


>gi|302342434|ref|YP_003806963.1| SMC domain protein [Desulfarculus baarsii DSM 2075]
 gi|301639047|gb|ADK84369.1| SMC domain protein [Desulfarculus baarsii DSM 2075]
          Length = 947

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          ++   + +  FR  A S+ L F +  T+    NG GKT +L+A   L      RR     
Sbjct: 3  VQFSSIKVVNFRGLAGSIELDFSSPITLIYAPNGTGKTTLLQAAELLFT----RRIRSKR 58

Query: 64 VTRIGSPSFFSTFA 77
                 + +S  A
Sbjct: 59 -INADMNNCWSECA 71



 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 268 PHRSDLIVDYCDKAI--TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
            + +D++    +        + S G+++ + + IFLA                LDE  AH
Sbjct: 816 INITDIVAYIENGVPLSPSKYFSRGQRQDLALSIFLA------RAREAGGTYFLDEPFAH 869

Query: 326 LDEDKRNALFRIVT 339
           LD+  R A+  IV 
Sbjct: 870 LDDLNRVAVIDIVR 883


>gi|291571522|dbj|BAI93794.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 311

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          ++I+ + ++ F  + +L +            T+FVG NG GK++IL A   L+    +  
Sbjct: 1  MEIQRVILTNFGLFKNLEISLAPTQQNPSNITVFVGKNGAGKSSILTA---LATSLSWFT 57

Query: 59 ASYA 62
          A   
Sbjct: 58 ARLR 61


>gi|237808344|ref|YP_002892784.1| DNA sulfur modification protein DndD [Tolumonas auensis DSM 9187]
 gi|237500605|gb|ACQ93198.1| DNA sulfur modification protein DndD [Tolumonas auensis DSM 9187]
          Length = 671

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/192 (18%), Positives = 72/192 (37%), Gaps = 8/192 (4%)

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV--EMINALSSLIMEYVQKENFPHI 224
           + R R   +    S + + +E    EL + +  AR   ++ +       +    EN  + 
Sbjct: 441 KIRARDKKKQELCSDYQALLEDAKQELRLALETARQIQKLHDKHRDNANKNASVENAQNT 500

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAIT 283
            L L+ F D        +L++ + +      + + +    LI P   D+ ++D     I 
Sbjct: 501 ILLLSKFADQLTKSRVKSLEQHFVESYKKLARKEDLQLCALINPKSFDVELIDEHGNKIN 560

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIG 342
               S GE+++  + I       +  T+G    +++D     LD   R+ L         
Sbjct: 561 RKAMSAGEKQIYAISI----LEALGKTSGRKLPIIIDTPLGRLDSHHRDKLVENYFPTAS 616

Query: 343 SQIFMTGTDKSV 354
            Q+ +  TD  +
Sbjct: 617 HQVVILSTDTEI 628



 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 19/71 (26%)

Query: 5  IKIKFLNISEFR---NYASLRLVFDA---------------QHTIFVGDNGVGKTNILEA 46
          + I  L+++ FR       + L   +                  +F G NG GKT+IL A
Sbjct: 1  MLITKLSLNNFRVFCGLHEIDLTPSSAAHNAKGEEIPGTERSIILFGGLNGAGKTSILTA 60

Query: 47 ISFLSPGR-GF 56
          +     GR  F
Sbjct: 61 VRLALYGRLSF 71


>gi|170288201|ref|YP_001738439.1| hypothetical protein TRQ2_0400 [Thermotoga sp. RQ2]
 gi|170175704|gb|ACB08756.1| conserved hypothetical protein [Thermotoga sp. RQ2]
          Length = 758

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 60/387 (15%), Positives = 124/387 (32%), Gaps = 58/387 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ +++  F  + +      +   I  G N  GKT +   I +   G         ++
Sbjct: 1   MKIERVHVEGFGKFENFSFPLKSGLNIIFGGNAAGKTTLANFIRYCLTGE------LPEL 54

Query: 65  --------TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                    R G     ++  RVE  +G  D  +   T          +N    +V   L
Sbjct: 55  ENYRPWFSNRFGG-YLETSEGRVEFGQGRLDPELFSFTSFISEGVDNTLNGSK-KVASFL 112

Query: 117 NKHLRISWLVPSMDRIFSGL---SMERRRFLDRMVFAIDPRHRRRMIDFER----LMRGR 169
            +  R       ++RI +      M++ + L+  +  +  R      +  R    +++ +
Sbjct: 113 MESYRNRPEAVELERILNEDFSVLMKKTKELEAEISNLKER-VEAWKEKRRSLLLVLKRK 171

Query: 170 NRLLTEGYFDSSWCSSI--------EAQMAELGVKINIARVEMI---NALSSLIMEYVQK 218
             L  +                     +++ +  +IN  + E++     L  +  +    
Sbjct: 172 KELSRDLQEKRRLLEEEIDRFESEKSERLSSIEARINEMKAELLRVEKELEEIERKTAVS 231

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
           E      + +   LD   ++    L++E        +  +   +         D  V   
Sbjct: 232 EEKVREAIEIAQKLDYLRERG-KELEKEIESLEEKSKDTEERLKTI-----MKDFSVSSL 285

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           +           E K+ L  + L    L+ N         L+EI  HL E  R  +   +
Sbjct: 286 E-----------ELKLKLENMKL-QIELVENEQKAK----LNEIIGHLREPLRE-IDEKL 328

Query: 339 TDIGSQIFMTGTDKSVFDSLNETAKFM 365
            +  ++I  TG D   FD      +  
Sbjct: 329 EETQAKIENTGDDMKRFDKTLSIFRIF 355


>gi|74138157|dbj|BAE28576.1| unnamed protein product [Mus musculus]
          Length = 761

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 54  IESIQLRNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLK 113

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
              + G  S              ADISI L  R D + R     D ++
Sbjct: 114 GFVKAGQNS--------------ADISITLRNRGDDAFRANVYGDSIV 147


>gi|16800310|ref|NP_470578.1| hypothetical protein lin1241 [Listeria innocua Clip11262]
 gi|16413715|emb|CAC96472.1| lin1241 [Listeria innocua Clip11262]
          Length = 646

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          K+  L +  F+    L + F+   T   G N  GKT I++A ++L
Sbjct: 5  KLLKLQLENFKGIKELEIDFENS-TSIYGANASGKTTIIDAFTWL 48


>gi|328869330|gb|EGG17708.1| structural maintenance of chromosome protein [Dictyostelium
           fasciculatum]
          Length = 1093

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA---ISFLSPGRGFRRASYAD 63
           I  + +  F  Y+ +      +  + +G NG GK++I+ A             R     D
Sbjct: 65  IVRVKLINFVTYSEIEFTPGPRLNVIIGPNGSGKSSIVCALALGLGGGTHLLGRAKQAKD 124

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             + G             ++G  +  ++ +  DD S    ++N   +   +   + ++  
Sbjct: 125 FIKNGEKHAIIEIELF--VKGGTNAIVRRDIYDDNST-TFRLNGKKLSATELQREVMKFQ 181

Query: 124 W 124
            
Sbjct: 182 I 182


>gi|325526688|gb|EGD04216.1| ATPase-like protein [Burkholderia sp. TJI49]
          Length = 392

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +K L ++ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 3  ALKTLAVAHYRSLRELIVPLAA-LNVVTGPNGSGKSSVYRALRLLA 47


>gi|315125767|ref|YP_004067770.1| hypothetical protein PSM_A0669 [Pseudoalteromonas sp. SM9913]
 gi|315014281|gb|ADT67619.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 611

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 58/380 (15%), Positives = 122/380 (32%), Gaps = 82/380 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + IS FR  ++L L    +  + +G N  GKT+I++A+  L+ G   R  +      
Sbjct: 5   VNSVRISGFRGISNLELSL-PKVVVLIGQNNAGKTSIIKALQ-LAIGDYSRHLTD----- 57

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                F+      + +     + I +   D  S R     D     V+     ++     
Sbjct: 58  ---EDFYIDC--YDNVRSEIIVDISIVPVDGSSQRANIFADE---WVEVFGDWIQADLEE 109

Query: 127 PSMDRI--FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                I         +  F              ++  +          L+      +W  
Sbjct: 110 NDFVAIRTICEKDSIKGGF--------------KVSRY---------PLSRWPGFENWTD 146

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               + A++  KI+  R++ I  ++      + +E             D  F+       
Sbjct: 147 ----ESAKINNKIS-KRIDAIPFVAIDAQRDIHQELREKTSYIGKVLSDISFESDDKDAL 201

Query: 245 EEYAKKLFDG------------RKMDSMSRRTLIGPHRSDLI-----VDYCDKAITIAHG 287
           EE   +L +               +DS+S+ +  G  ++D+      +    K  +I  G
Sbjct: 202 EELIAELNESAVEKSSVLSELKTHLDSLSQ-SFEGQGQADITPFPKKIRDLSKRFSIHFG 260

Query: 288 S----------TG---EQKVVLVGIFLAHARLISNTTGFA-----PILLLDEISAHLDED 329
                       G        ++ +  A   ++            P++  +E  AHL  +
Sbjct: 261 EDDSNSFSMEYHGMGTRSWASMLTVK-AFIDILEKKHVEEEECFFPLIAAEEPEAHLHPN 319

Query: 330 KRNALFRIVTDIGSQIFMTG 349
            +  L++ +TDI  Q  ++ 
Sbjct: 320 AQRTLYKQLTDIKGQTIISS 339


>gi|56475784|ref|YP_157373.1| hypothetical protein ebA671 [Aromatoleum aromaticum EbN1]
 gi|56311827|emb|CAI06472.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 368

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          ++ + +  FR+  ++ L       + +G NG GK+N +
Sbjct: 7  LQRVALRGFRSIRAMDLELGP-LNVLIGANGAGKSNFI 43


>gi|308069593|ref|YP_003871198.1| DNA repair protein RecN [Paenibacillus polymyxa E681]
 gi|305858872|gb|ADM70660.1| DNA repair protein recN (Recombination protein N) [Paenibacillus
           polymyxa E681]
          Length = 572

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 68/202 (33%), Gaps = 26/202 (12%)

Query: 16  RNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS--- 69
           RN     ++ + F     +  G+ G GK+ I++A+  ++ GRG      AD+ R G    
Sbjct: 8   RNLAVVEAVDVHFYKGFHVLSGETGAGKSIIIDALGLIAGGRG-----SADLVRYGCDKA 62

Query: 70  --PSFFSTFAR------VEGMEGLADISIKLETRDD---RSVRCLQINDVVIRV--VDEL 116
              + F    +      +E     A+    L  R +   +     +IN  ++ +  + E+
Sbjct: 63  EMEALFELPVKHPVWNTLEEQGIKANAEEHLLIRRELTVQGKSSSRINGQMVNLTMLREV 122

Query: 117 NKHLRISWLVPSMDRIFSGLS--MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            + L           +            F D ++  +   +R R   F +  +    L +
Sbjct: 123 GEQLVNIHGQHEHQSLLRADRHLALLDTFGDSVIGPVKTLYRERYNAFVKAEKEVRELQS 182

Query: 175 EGYFDSSWCSSIEAQMAELGVK 196
                         Q+ E+   
Sbjct: 183 SSQKAYQLLDMYRFQLEEIAAA 204


>gi|229526609|ref|ZP_04416013.1| hypothetical protein VCA_000739 [Vibrio cholerae bv. albensis
           VL426]
 gi|229336767|gb|EEO01785.1| hypothetical protein VCA_000739 [Vibrio cholerae bv. albensis
           VL426]
          Length = 630

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 9/62 (14%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+Q+ VL+                 PIL+LDE +AHLDE     +   +  +G  I M
Sbjct: 550 SQGQQQRVLLA---------RALYQRKPILILDEGTAHLDEVNEKNILENLKGLGITIIM 600

Query: 348 TG 349
           T 
Sbjct: 601 TA 602


>gi|257792229|ref|YP_003182835.1| DNA repair protein RecN [Eggerthella lenta DSM 2243]
 gi|317490157|ref|ZP_07948645.1| DNA repair protein RecN [Eggerthella sp. 1_3_56FAA]
 gi|325833524|ref|ZP_08165973.1| DNA repair protein RecN [Eggerthella sp. HGA1]
 gi|257476126|gb|ACV56446.1| DNA repair protein RecN [Eggerthella lenta DSM 2243]
 gi|316910651|gb|EFV32272.1| DNA repair protein RecN [Eggerthella sp. 1_3_56FAA]
 gi|325485448|gb|EGC87917.1| DNA repair protein RecN [Eggerthella sp. HGA1]
          Length = 571

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M + I+++ L +          LV     T+  G+ G GKT +L A+  L   R     +
Sbjct: 1  MIDEIQVENLAL-----IREATLVPARGLTVLTGETGAGKTALLSALKLLMGAR-----A 50

Query: 61 YADVTRIGSPSF 72
            D  R G  + 
Sbjct: 51 DKDAVRDGEEAL 62


>gi|302335250|ref|YP_003800457.1| hypothetical protein Olsu_0458 [Olsenella uli DSM 7084]
 gi|301319090|gb|ADK67577.1| hypothetical protein Olsu_0458 [Olsenella uli DSM 7084]
          Length = 396

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 30/176 (17%)

Query: 6   KIKFLNISEFRNYAS-LRLVFDAQ----HTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           K+  L +  FR++     L  D +     T   G N  GK+NI +A+  L      RR+S
Sbjct: 3   KLVSLTVGNFRSFCDPQTLTLDGRSAHSVTAVFGPNAGGKSNIAKALVALINCI--RRSS 60

Query: 61  YAD--------VTRIG---SPSFFSTFARVEGMEGLADIS-----IKLETRDDRSVRCLQ 104
             +        + + G    PS       ++G      +S     +  E   ++S +  +
Sbjct: 61  DPNFRLPYEPFLLKAGMDERPSMLGMAFSLDGRRYEYSVSFLAHKVTHELLREQSDKTNR 120

Query: 105 INDVVIRVVDELNKHLRISWL-------VPSMDRIFSGLSMERRRFLDRMVFAIDP 153
           +N V+ R  D+LN + R                 + +    +   + + +   +D 
Sbjct: 121 MNKVLERTDDKLNPYARQYGFGKRLLDRTREDTLLITKGREDNNAYSNIIFGLLDH 176


>gi|253997078|ref|YP_003049142.1| DNA repair protein RecN [Methylotenera mobilis JLW8]
 gi|253983757|gb|ACT48615.1| DNA repair protein RecN [Methylotenera mobilis JLW8]
          Length = 550

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 82/237 (34%), Gaps = 31/237 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           ++ L+I +F     L L F +  T+  G+ G GK+ +++A+S     RG     R     
Sbjct: 2   LQTLSIRDFVIVDQLDLDFQSGFTVLTGETGAGKSILIDALSLALGARGEGGVTRAGCDK 61

Query: 63  DVTR-----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDE 115
                      +    +  A  E      ++ ++     D   R   IN      + + E
Sbjct: 62  AEISACFSLQNNVEALTWLAEQEIAHDEPELLLRRVIYADGRSRAF-INGASATMQQLKE 120

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRGRNRLL 173
           L + L   +   +   +    ++ +R+ LD    +  +      +   + RL   R  L 
Sbjct: 121 LGEFLVDIYSQNAHHSLLK--AVTQRQILDEFGGLLGVAKNVAEQYKHWYRLHGLRLELE 178

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                      +   ++A L         + +  LS+L  E  + +   H  L L+ 
Sbjct: 179 KNA-------EAYADELALL--------RDNVRELSALAFEAQEWDALQHEHLLLSN 220


>gi|27468393|ref|NP_765030.1| abortive phage resistance protein [Staphylococcus epidermidis
          ATCC 12228]
 gi|27315940|gb|AAO05074.1|AE016749_20 abortive phage resistance protein [Staphylococcus epidermidis
          ATCC 12228]
          Length = 443

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 7  IKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFL 50
          IK + +  ++++  + + F      + + +   G+NG GK+NI+    FL
Sbjct: 5  IKSVELKNYKSFKKVEIDFTSNIQSENKFSFIYGENGSGKSNIISVFHFL 54


>gi|332663918|ref|YP_004446706.1| hypothetical protein Halhy_1948 [Haliscomenobacter hydrossis DSM
          1100]
 gi|332332732|gb|AEE49833.1| hypothetical protein Halhy_1948 [Haliscomenobacter hydrossis DSM
          1100]
          Length = 652

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + IS ++++  +  ++      + VG N VGKT  LE ++F
Sbjct: 1  MYIKKVRISNYKSFNGTQDVLLSRGINLVVGKNNVGKTAFLETLTF 46


>gi|322387920|ref|ZP_08061527.1| DNA repair protein RecN [Streptococcus infantis ATCC 700779]
 gi|321141193|gb|EFX36691.1| DNA repair protein RecN [Streptococcus infantis ATCC 700779]
          Length = 555

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 10/76 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  ++I  F    ++ L F+   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2  LLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGAR-----ATTDVIR 56

Query: 67 IGSPSFFSTFARVEGM 82
           G+P      A +EG+
Sbjct: 57 HGAPK-----AEIEGL 67


>gi|314937234|ref|ZP_07844579.1| conserved hypothetical protein [Staphylococcus hominis subsp.
          hominis C80]
 gi|313654667|gb|EFS18414.1| conserved hypothetical protein [Staphylococcus hominis subsp.
          hominis C80]
          Length = 618

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+K + I  FR + S  ++ +   T  +G N  GK+++L+AI +L
Sbjct: 1  MKLKSIKIEGFRKHYSTEVICED-TTFLIGPNNAGKSSVLKAIKYL 45


>gi|156382738|ref|XP_001632709.1| predicted protein [Nematostella vectensis]
 gi|156219769|gb|EDO40646.1| predicted protein [Nematostella vectensis]
          Length = 1221

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 3  NRIKIKFLNISEFRNYASL-RL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
           R+ I  +    F++YA +  L  F    +  VG NG GK+N+++A+ F+   R    R 
Sbjct: 12 PRLMITKIVNENFKSYAGVQELGPFHKSFSSIVGPNGSGKSNVIDAMLFVFGYRSKMIRT 71

Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLA 86
             + +    S         V       
Sbjct: 72 KKVSQLIHNSSAHPNVASCTVSVHFQRI 99


>gi|29346771|ref|NP_810274.1| recombination protein RecN [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338668|gb|AAO76468.1| DNA repair protein recN (Recombination protein N) [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 555

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 63/202 (31%), Gaps = 18/202 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  RR +  
Sbjct: 2   LRSLYIQNYALIEKLDIGFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRRGASK 61

Query: 63  DVT--RIGSPSFFST--FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDEL 116
            +   R    ++     F   E      +  ++ E +     R   IND       V EL
Sbjct: 62  CIIEARFDISAYGMRPFFEENELEYDDEECILRREVQASGKSRAF-INDTPASLAQVKEL 120

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRGRNR 171
            + L           +       +   LD +    D               +R +     
Sbjct: 121 GEQLIDV--HSQHQNLLLNKEGFQLNVLDILAHNDDALEKYHLLYNEWKLLDRELSELTA 178

Query: 172 LLTEGYFDSSWCSSIEAQMAEL 193
           L  +   D  +      Q+ E 
Sbjct: 179 LAEQSRTDEDYLRFQLEQLEEA 200


>gi|330503512|ref|YP_004380381.1| hypothetical protein MDS_2598 [Pseudomonas mendocina NK-01]
 gi|328917798|gb|AEB58629.1| hypothetical protein MDS_2598 [Pseudomonas mendocina NK-01]
          Length = 633

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 43/124 (34%), Gaps = 20/124 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHT---IFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           +  L +  F++     +      T   +  G N  GK+++++AI  L    G R  S + 
Sbjct: 2   LTNLRLKNFKSI---DMDVPIGLTNYSVLCGANSSGKSSLIQAILLLGQTFGSRIPSDSV 58

Query: 63  ----DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC------LQINDVVIRV 112
                + R+G              +    I   + T+   ++         +++   ++ 
Sbjct: 59  VLNGHLIRLGGFQDIKKHGV---GDDKVTIGFSITTQASNALNISFEMVFGRLSKQKVKQ 115

Query: 113 VDEL 116
            D+ 
Sbjct: 116 EDDY 119


>gi|291532846|emb|CBL05959.1| DNA repair protein RecN [Megamonas hypermegale ART12/1]
          Length = 569

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +K L+I  F     +++ FD    I  G+ G GK+ +L A+  +  GR  R    A   R
Sbjct: 2  LKTLSIWNFALIEHVQIDFDKGLNILTGETGAGKSILLGALGMV-IGR--RTNIDA--IR 56

Query: 67 IGSP 70
           G  
Sbjct: 57 SGCE 60


>gi|285018507|ref|YP_003376218.1| chromosome segregation protein smc [Xanthomonas albilineans GPE
           PC73]
 gi|283473725|emb|CBA16228.1| putative chromosome segregation protein smc [Xanthomonas
           albilineans]
          Length = 1167

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 92/283 (32%), Gaps = 39/283 (13%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
           +++  + +S F+++     L      T  VG NG GK+NI++A+ ++         R  S
Sbjct: 1   MRLSTIKLSGFKSFVDPTTLHLPTNMTGIVGPNGCGKSNIIDAVRWVMGESSASRLRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADISIKLETRDDRSVRCLQ-----------INDV 108
             DV   GS +    + A VE +   +D +I  E      +   +           +N  
Sbjct: 61  LTDVIFSGSSARKPVSQATVELIFDNSDRTIAGEYAAFNEISVKRQVSRDGSSSYSLNGT 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI-------DPRHRRRMID 161
             R  D +      + L P    I              M+  I          +      
Sbjct: 121 KCRRRD-ITDLFLGTGLGPRSYSIIEQG----------MISQIIEARPEDLRVYLEEAAG 169

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI-NIARVEMINALSSLIMEYVQKEN 220
             +    R    T           +     E+G ++ ++ R          + E  + ++
Sbjct: 170 ISKYKERRKETETRIRHTRENLERLSDLREEIGKQLEHLKRQARQAEQYQALQEERRIKD 229

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEE---YAKKLFDGRKMDSM 260
                L   G LDG+      AL +E     + + + R  ++ 
Sbjct: 230 AQWKALEYRG-LDGRLQGLREALDQEETRLQQLIAEQRDAEAR 271


>gi|254196484|ref|ZP_04902908.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
 gi|169653227|gb|EDS85920.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
          Length = 598

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 128/399 (32%), Gaps = 60/399 (15%)

Query: 1   MTNRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           +  R ++  L IS FR      + +  D    + VG N  GK++IL A   +        
Sbjct: 15  VAPRARLHKLTISNFRAIGAKPVTIELDD-IVVLVGPNNAGKSSILRAYEVVME-----S 68

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
               ++T      F S     EG       +I+LET      +    + + ++   + + 
Sbjct: 69  GKLNELT---IEDFPSARLPEEGAADAVP-TIELETVLYEDSKAPAQHWIDVKANGDRHV 124

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH----RRRMIDFERLMRGRNRLLT 174
             R  W VP       G   +R    +  +   DP H       +    R    R     
Sbjct: 125 RERWVWRVP-------GKPEKRG--YNAELGEWDPDHGPWGVAGVAQINRPEPHRIEAFA 175

Query: 175 EGYFDSS-----WCSSIEAQM------AELGVKINIARVEMINALSSLIMEYVQKENFPH 223
                +         +I+ ++      +E          +++++++  + + V  +    
Sbjct: 176 NPQEQAEEIISLLQEAIKEKLKDVSKKSESSEGEKSQYNQLLDSVAD-LQKRVAADALEA 234

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
           IK      ++    +S   +  E++  L D R  D + +          L +       +
Sbjct: 235 IK-----DVNDDLSKSISDVFPEFSITL-DARPEDDLEKVISFFKSSPVLRMGPAGGHQS 288

Query: 284 I--AHGSTGEQKVVL-VGIF-LAHARLISNTTG----FAPILLLDEISAHL------DED 329
                GS G ++ +L   +  LA         G       +LL+DE    L      D  
Sbjct: 289 TLERQGS-GARRTLLWTALRILAEHARTKKGKGDVSERPHVLLIDEPEMCLHPTAIRDAC 347

Query: 330 KRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
           +   L+ +      Q+ +T       D        +R+ 
Sbjct: 348 RV--LYSLPQSKKWQVMVTTHSPIFIDLSRNNTSIVRVQ 384


>gi|146283556|ref|YP_001173709.1| hypothetical protein PST_3231 [Pseudomonas stutzeri A1501]
 gi|145571761|gb|ABP80867.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 561

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 1  MTNRI-KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          M   + +IK +NI +FR   ++      + T+  G NG  K++IL     L+    FR+ 
Sbjct: 1  MPRNVTQIKKINIEKFRALNNVEFELGNRITVICGKNGTAKSSIL---GILAQAFNFRKN 57


>gi|115351875|ref|YP_773714.1| ATPase-like protein [Burkholderia ambifaria AMMD]
 gi|115281863|gb|ABI87380.1| ATPase-like protein [Burkholderia ambifaria AMMD]
          Length = 391

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 3  ALNTLAIANYRSLRELIVPLAA-LNVVTGPNGSGKSSVYRALRLLA 47


>gi|27881713|gb|AAH44679.1| XCAP-C protein [Xenopus laevis]
          Length = 361

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  R+   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 73  APRLMITHIVNQNFKSYAGERILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 132

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 133 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 161


>gi|269139557|ref|YP_003296258.1| hypothetical protein ETAE_2212 [Edwardsiella tarda EIB202]
 gi|267985218|gb|ACY85047.1| hypothetical protein ETAE_2212 [Edwardsiella tarda EIB202]
 gi|304559445|gb|ADM42109.1| Predicted OLD family ATP-dependent endonuclease [Edwardsiella tarda
           FL6-60]
          Length = 556

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 11/104 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + ++ + +  FR    + L  D   T+ +G+N  GK+++L+A++          +   D+
Sbjct: 1   MYLERIEVVGFRGINRISLSLDDN-TVLIGENAWGKSSLLDALTLCL-------SPERDL 52

Query: 65  TRIGSPSFFSTFARVEGMEGLADIS---IKLETRDDRSVRCLQI 105
            R     F+         E    I     + E    R+ R  ++
Sbjct: 53  YRFEPHDFYFPPGDETAREHHLQIVFTFCETERGHARARRYHRL 96


>gi|257439743|ref|ZP_05615498.1| DNA repair protein RecN [Faecalibacterium prausnitzii A2-165]
 gi|257197811|gb|EEU96095.1| DNA repair protein RecN [Faecalibacterium prausnitzii A2-165]
          Length = 558

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 83/271 (30%), Gaps = 29/271 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADVT 65
           +  L I          + F+    +  G+ G GK+ ++++I + L      R +    + 
Sbjct: 2   LSSLQIENVAVIQKANVHFEKGLNVLTGETGAGKSILIDSINAILGN----RTSKD--LV 55

Query: 66  RIGSPSFFSTFARVE------------GMEGLADISIKLETRDDRSVRCLQINDVV--IR 111
           R G+       A  +            G E    +++  E   +    C +IN +     
Sbjct: 56  RTGAAKAVIRAAFDDVPPAVLDSLEKAGYERSEALTLSREITAEGKSTC-RINGMPATAA 114

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDFERLMRGR 169
           ++ EL   L           + +         LD      A+   +     +  ++ +  
Sbjct: 115 ILRELCGGLININGQHDSVGLLN--PARHEGILDAYAQNGAVYQEYYAVYRELIKVKKEL 172

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
           + ++T+          +  Q+ E+    +     E + A   ++           I  S 
Sbjct: 173 DAIITDEGEKQRKIDLLSYQVQEIEDASLTAGEEETLMARRKVLAN--ASTIRERISQSY 230

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDS 259
                G        L  E +  +    ++DS
Sbjct: 231 ALLSGGDDAPGAVDLLGEASNAIDGAAQLDS 261


>gi|281411756|ref|YP_003345835.1| hypothetical protein Tnap_0317 [Thermotoga naphthophila RKU-10]
 gi|281372859|gb|ADA66421.1| conserved hypothetical protein [Thermotoga naphthophila RKU-10]
          Length = 758

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 60/387 (15%), Positives = 124/387 (32%), Gaps = 58/387 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ +++  F  + +      +   I  G N  GKT +   I +   G         ++
Sbjct: 1   MKIERVHVEGFGKFENFSFPLKSGLNIIFGGNAAGKTTLANFIRYCLTGE------LPEL 54

Query: 65  --------TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                    R G     ++  RVE  +G  D  +   T          +N    +V   L
Sbjct: 55  ENYRPWFSNRFGG-YLETSEGRVEFGQGRLDPELFSFTSFISEGVDNTLNGSK-KVASFL 112

Query: 117 NKHLRISWLVPSMDRIFSGL---SMERRRFLDRMVFAIDPRHRRRMIDFER----LMRGR 169
            +  R       ++RI +      M++ + L+  +  +  R      +  R    +++ +
Sbjct: 113 MESYRNRPEAVELERILNEDFSVLMKKTKELEAEISNLKER-VEAWKEKRRSLLLVLKRK 171

Query: 170 NRLLTEGYFDSSWCSSI--------EAQMAELGVKINIARVEMI---NALSSLIMEYVQK 218
             L  +                     +++ +  +IN  + E++     L  +  +    
Sbjct: 172 KELSRDLQEKRRLLEEEINRFESEKSERLSSIEARINEMKAELLRVEKELEEIERKTAVS 231

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
           E      + +   LD   ++    L++E        +  +   +         D  V   
Sbjct: 232 EEKVREAIEIAQKLDYLRERG-KELEKEIESLEEKSKDTEERLKTI-----MKDFSVSSL 285

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           +           E K+ L  + L    L+ N         L+EI  HL E  R  +   +
Sbjct: 286 E-----------ELKLKLENMKL-QIELVENEQKAK----LNEIIGHLREPLRE-IDEKL 328

Query: 339 TDIGSQIFMTGTDKSVFDSLNETAKFM 365
            +  ++I  TG D   FD      +  
Sbjct: 329 EETQAKIENTGDDMKRFDKTLSIFRIF 355


>gi|254475719|ref|ZP_05089105.1| ATP-binding protein [Ruegeria sp. R11]
 gi|214029962|gb|EEB70797.1| ATP-binding protein [Ruegeria sp. R11]
          Length = 355

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +K      F +  S    F     + VG+NG+GK++ L+A+ 
Sbjct: 2  LKSATFINFTSIPSDEWKFSPGLNVIVGENGLGKSHALKALY 43


>gi|74217207|dbj|BAC40608.2| unnamed protein product [Mus musculus]
          Length = 454

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 77  APRLMITHIVNQNFKSYAGEKVLGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 136

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 137 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 165


>gi|67474252|ref|XP_652875.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|56469773|gb|EAL47489.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
          Length = 1241

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 9  FLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
           L I+  R+      + + F    T+  G NG GKT I+E++ +   G  
Sbjct: 6  KLEIAGIRSINPDKPVEIEFFKPLTLITGPNGAGKTTIIESVRYACTGTS 55


>gi|315658205|ref|ZP_07911077.1| DNA repair protein RecN [Staphylococcus lugdunensis M23590]
 gi|315496534|gb|EFU84857.1| DNA repair protein RecN [Staphylococcus lugdunensis M23590]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQNLSIKQFAIIDELEIQFSDGLTVLSGETGAGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGS-----PSFFSTFARVEGMEGLADISIKLE 93
           G         F     +E +  L+++ I ++
Sbjct: 57 HGEKKAIIEGIFDIDNSIEAISILSELGIDID 88


>gi|289550709|ref|YP_003471613.1| DNA repair protein RecN [Staphylococcus lugdunensis HKU09-01]
 gi|289180241|gb|ADC87486.1| DNA repair protein RecN [Staphylococcus lugdunensis HKU09-01]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQNLSIKQFAIIDELEIQFSDGLTVLSGETGAGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGS-----PSFFSTFARVEGMEGLADISIKLE 93
           G         F     +E +  L+++ I ++
Sbjct: 57 HGEKKAIIEGIFDIDNSIEAISILSELGIDID 88


>gi|261416708|ref|YP_003250391.1| DNA repair protein RecN [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373164|gb|ACX75909.1| DNA repair protein RecN [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326269|gb|ADL25470.1| DNA repair protein RecN [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 549

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 13/125 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           +K L I+ F   A   + F    T   G+ G GK+ +++A+  +   +      R     
Sbjct: 2   LKQLTINSFTLIAEASVPFHEGFTAITGETGAGKSVLMKALRMVCGDKSQASMVRTGEEK 61

Query: 63  DVTR-----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--E 115
            V          P      A++E ++   ++ I+ E  ++   R  ++N  V+ + D  E
Sbjct: 62  AVIEGTFDISNEPEVKQILAKLE-LDDDDELIIRREILENGKGRA-RVNGSVVSLSDLQE 119

Query: 116 LNKHL 120
           L + L
Sbjct: 120 LGESL 124


>gi|228918563|ref|ZP_04082005.1| hypothetical protein bthur0012_56990 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
 gi|228841088|gb|EEM86288.1| hypothetical protein bthur0012_56990 [Bacillus thuringiensis
          serovar pulsiensis BGSC 4CC1]
          Length = 521

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAI 47
          +KI+ + I  ++         F     +F+G N VGK+NILEA+
Sbjct: 7  MKIQEIKIFNYKTTVDFEFNCFKNGLNVFIGTNNVGKSNILEAL 50


>gi|282911158|ref|ZP_06318960.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|282324853|gb|EFB55163.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          WBG10049]
 gi|312438012|gb|ADQ77083.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          TCH60]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAV 63


>gi|225352185|ref|ZP_03743208.1| hypothetical protein BIFPSEUDO_03801 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157432|gb|EEG70771.1| hypothetical protein BIFPSEUDO_03801 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 568

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 50/276 (18%), Positives = 82/276 (29%), Gaps = 44/276 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I       S  +      T   G+ G GK+ +L AI  +S G             
Sbjct: 2   LEELEIHNLGPIRSALIAPAGGMTAITGETGAGKSMLLSAIRLISGGPS-----DGGRVS 56

Query: 67  IGSPSFFSTFA------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           +G+   ++                 E      D  + L  +   S R   +         
Sbjct: 57  VGASEAWAQGVFEVASSPAAVAAAHEAGFEPEDGELFLSRKVPASGRSRSMLSGRSVPRS 116

Query: 115 ELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDR----------------MVFAIDPRHRR 157
            L      +  +    D++    S  +R FLDR                 + A+D R   
Sbjct: 117 VLGSIAAELVTIHGQADQLRIASSARQREFLDRYAGDDVALVAYGKAWNALRAMDER-LE 175

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
           R+   E  MR +   L E     +       +MAEL      AR + I        E  +
Sbjct: 176 RLSSQESSMRQQADYLRESIERINRIDPQPGEMAEL-----RARRDRIE----NAAEIAE 226

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
             N     L  +  +D     S   L +  ++ L  
Sbjct: 227 GVNRALSALDASQVVDDVESSSATDLIDRASQALRA 262


>gi|223043092|ref|ZP_03613139.1| DNA repair protein RecN [Staphylococcus capitis SK14]
 gi|222443303|gb|EEE49401.1| DNA repair protein RecN [Staphylococcus capitis SK14]
          Length = 558

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 95/282 (33%), Gaps = 40/282 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2   LQTLSIKQFAIIDKLEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--YVR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKL-------ETRDDRSVRCL-QINDVVIRVV 113
            G         F      + +  L D+SI +       +     S + + +IN+ ++ + 
Sbjct: 57  HGEKKAIIEGIFDIDESKDAISILEDLSIDIDEDFLLVKREIFSSGKSICRINNQIVTLQ 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG----R 169
           D       +  +    +           + LD      + ++   +  ++ +       R
Sbjct: 117 DLRKVMQELLDIHGQHETQSLLKQKYHLQLLDD---YAENQYSDLLQQYKNIFNQYKDKR 173

Query: 170 NRLLTEGYFDSSWCSSIE------AQMAELG--------VKINIARVEMINALSSLIMEY 215
             L      D +    ++       ++ E          ++++I R++    LS  +   
Sbjct: 174 KELEDLESADQALLQRLDLMKFQFEELTEASLKEDEVEQLEVDIKRIQNSEKLSLALNNA 233

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            Q     +        L     QS   +  E  +KL +    
Sbjct: 234 HQVLTDENAITDRLYELSNHL-QSINDIVPEKYEKLKEDIDQ 274


>gi|149190061|ref|ZP_01868338.1| recombination and repair protein [Vibrio shilonii AK1]
 gi|148836091|gb|EDL53051.1| recombination and repair protein [Vibrio shilonii AK1]
          Length = 554

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 87/260 (33%), Gaps = 46/260 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A   R
Sbjct: 2   LSHLSVNNFAIVKSLQLELSTGMTTITGETGAGKSIAIDALGLCLGGR-----AEAGAVR 56

Query: 67  IGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      T A V           E  +        L     +  R    IN   +    
Sbjct: 57  AGEDKTEVTAAFVIENNQQATRWLEDNDLFDGTECILRRTITKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG-RNR 171
           +  L + L       +  ++            D  +  +D ++         L++  RN+
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMKS---------DYQLSLLD-QYAGHTN----LLQQVRNK 162

Query: 172 LLTEGYFDSSWCSSIEAQMAELGV------KINIARVEMINALSSLIMEYVQKENFPHIK 225
                  D +      +Q+ E         ++   +++ +N L+    E+ + E   H +
Sbjct: 163 YQAWRSADIAL-----SQLKENSANNLAQLQLLEYQIKELNELAIGEQEFPELEQ-EHKR 216

Query: 226 LSLTGFLDGKFDQSFCALKE 245
           LS +G L     Q+   + E
Sbjct: 217 LSNSGELAITCQQAIDIIYE 236


>gi|74228735|dbj|BAE21860.1| unnamed protein product [Mus musculus]
          Length = 451

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 77  APRLMITHIVNQNFKSYAGEKVLGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 136

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 137 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 165


>gi|302843706|ref|XP_002953394.1| structural maintenance of chromosomes protein 6 [Volvox carteri f.
           nagariensis]
 gi|300261153|gb|EFJ45367.1| structural maintenance of chromosomes protein 6 [Volvox carteri f.
           nagariensis]
          Length = 1276

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR----ASY 61
           +I  + +  F  +    + F    T+  G NG GK+ +++A+     G   R      + 
Sbjct: 173 QIAKIRVENFMCHKHFEMEFGPHVTLVSGQNGSGKSAVVQALQVC-LGVSARNTGRGTAI 231

Query: 62  ADVTR 66
           A++  
Sbjct: 232 AELIN 236


>gi|254579491|ref|XP_002495731.1| ZYRO0C01716p [Zygosaccharomyces rouxii]
 gi|238938622|emb|CAR26798.1| ZYRO0C01716p [Zygosaccharomyces rouxii]
          Length = 1413

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
             R+ I  L + +F++YA  ++   F+   +  VG NG GK+N+++++ F+   R    R
Sbjct: 140 HTRLCIDQLILQDFKSYAGRQVVGPFNTSFSAVVGPNGSGKSNVIDSMLFVFGFRANKMR 199

Query: 58  RASYADVTRIGSP 70
           +   +D+      
Sbjct: 200 QDRLSDLIHKSEE 212


>gi|218245192|ref|YP_002370563.1| SMC domain-containing protein [Cyanothece sp. PCC 8801]
 gi|218165670|gb|ACK64407.1| SMC domain protein [Cyanothece sp. PCC 8801]
          Length = 448

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 12/76 (15%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +K + + ++ F+++    +       + +G N  GK+N L+   FL            D+
Sbjct: 1  MKFERVKVANFKSFDDCEVKLKD-FNVVIGANASGKSNFLQIFRFL-----------RDI 48

Query: 65 TRIGSPSFFSTFARVE 80
             G  +  S    VE
Sbjct: 49 QLHGLENAISLQGDVE 64


>gi|171321894|ref|ZP_02910788.1| ATPase-like protein [Burkholderia ambifaria MEX-5]
 gi|171092808|gb|EDT38077.1| ATPase-like protein [Burkholderia ambifaria MEX-5]
          Length = 391

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 3  ALNTLAIANYRSLRELIVPLAA-LNVVTGPNGSGKSSVYRALRLLA 47


>gi|148745129|gb|AAI42746.1| Smc4 protein [Danio rerio]
          Length = 481

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 78  APRLMITHIVNRNFKSYAGEQILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 137

Query: 58  RASYADVTRI--GSPSFFSTFARVE 80
               + +     G P   S    V 
Sbjct: 138 SKKLSVLIHSSDGHPDIQSCTVEVH 162


>gi|114568719|ref|YP_755399.1| hypothetical protein Mmar10_0165 [Maricaulis maris MCS10]
 gi|114339181|gb|ABI64461.1| conserved hypothetical protein [Maricaulis maris MCS10]
          Length = 595

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +++  + I  F+       +      T+  G N  GK+ +L+A+ +
Sbjct: 1  MRLTRIEIENFKGIGKRQVIDLAP-ITLLFGPNSAGKSTVLQALHY 45


>gi|78066656|ref|YP_369425.1| ATPase-like [Burkholderia sp. 383]
 gi|77967401|gb|ABB08781.1| ATPase-like protein [Burkholderia sp. 383]
          Length = 391

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 3  ALNTLAIANYRSLRELIVPLAA-LNVVTGPNGSGKSSVYRALRLLA 47


>gi|108804290|ref|YP_644227.1| DNA repair protein RecN [Rubrobacter xylanophilus DSM 9941]
 gi|108765533|gb|ABG04415.1| DNA repair protein RecN [Rubrobacter xylanophilus DSM 9941]
          Length = 557

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 46/264 (17%), Positives = 85/264 (32%), Gaps = 47/264 (17%)

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL  +L      P       G   E R         ++ ++   +  + R  R R R L 
Sbjct: 290 ELRAYLEELEADPERLEAVEGRLAELR--------GLERKYGGDVPGYLRGARERLRRLE 341

Query: 175 EGYFDSSWCSS----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
               +++         E ++ EL  K++ AR E    L+  +       N   + L  T 
Sbjct: 342 NADEETAGLEEKIARGERRLGELAEKVSAARREAAGRLARRVQ-----GNLEGLNLGGTL 396

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
           F  G        L              + +       P   +L V          H S G
Sbjct: 397 FRAGLVPAEPGPLG------------RERVEFSIRPNPGEPELPVR--------RHASGG 436

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMT 348
           E   +++ + LA           +   + DE+ A +  +   A+   + ++G   Q+ +T
Sbjct: 437 ELSRIMLALRLAQ-----REPDPSVTYIFDEVDAGIGGETATAVGARLRELGERCQV-IT 490

Query: 349 GTDKSVFDSLNETAKFMRISNHQA 372
            T      S  E +  + +S  + 
Sbjct: 491 ITHLPQIAS--EASSHVVVSKEEV 512


>gi|261400774|ref|ZP_05986899.1| putative ATP-binding protein [Neisseria lactamica ATCC 23970]
 gi|313667584|ref|YP_004047868.1| ATP-binding protein [Neisseria lactamica ST-640]
 gi|269209374|gb|EEZ75829.1| putative ATP-binding protein [Neisseria lactamica ATCC 23970]
 gi|309379308|emb|CBX22081.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313005046|emb|CBN86478.1| putative ATP-binding protein [Neisseria lactamica 020-06]
          Length = 348

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M++   I+ L ++ F    +    F     I V +NG GKT++L+ +  L
Sbjct: 1  MSSNQYIQSLELTNFTVLPNDTFKFSENLNIIVAENGCGKTHLLKILYSL 50


>gi|49483769|ref|YP_040993.1| DNA repair protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282904102|ref|ZP_06311990.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          C160]
 gi|282905929|ref|ZP_06313784.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          Btn1260]
 gi|282908839|ref|ZP_06316657.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|283958284|ref|ZP_06375735.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|295428098|ref|ZP_06820730.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          EMRSA16]
 gi|297590936|ref|ZP_06949574.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus MN8]
 gi|49241898|emb|CAG40592.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
          MRSA252]
 gi|282327103|gb|EFB57398.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          WW2703/97]
 gi|282331221|gb|EFB60735.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          Btn1260]
 gi|282595720|gb|EFC00684.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          C160]
 gi|283790433|gb|EFC29250.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          A017934/97]
 gi|295128456|gb|EFG58090.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          EMRSA16]
 gi|297575822|gb|EFH94538.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus MN8]
 gi|315195421|gb|EFU25808.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
          CGS00]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAV 63


>gi|297181866|gb|ADI18044.1| ATPase involved in DNA repair [uncultured actinobacterium
          HF0200_20K23]
          Length = 531

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L++       S  LV     T+  G+ G GKT +++AI  L+ G+     +   + R
Sbjct: 2  LLELSVQNLGVIESSSLVLGPGVTVLTGETGAGKTMVVQAIQLLTGGK-----ADPSMVR 56

Query: 67 IGSPSFFSTFARVEGMEGLADISIKLETR 95
           G+       A VEG    +D    +  R
Sbjct: 57 NGAEQ-----ATVEGRFLTSDGGEVILRR 80


>gi|118486802|gb|ABK95236.1| unknown [Populus trichocarpa]
          Length = 247

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 17/211 (8%)

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
            +  +      +++ +  +      R  L        +   + + ++ EL   ++  + E
Sbjct: 5   CNEQLQQFSHVNKKALDQYVNFTEQREELQKR----QAELEAGDEKIRELISALDQRKDE 60

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRR 263
            I      +  + ++     ++    G       +       +        R+ D   R 
Sbjct: 61  SIERTFKGVARHFREVFSELVQ---GGHGHLVMMKKKDGDHGDDDYDDDGPREADLEGRV 117

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
                 +  +      +  ++   S G++ VV + +  A           AP  L DEI 
Sbjct: 118 EKYIGVKVKVSFTGQGETQSMKQLSGGQKTVVALTLIFA-----IQRCDPAPFYLFDEID 172

Query: 324 AHLDEDKRNALFRIVTDI----GSQIFMTGT 350
           A LD   R A+  ++  +     +Q F+T T
Sbjct: 173 AALDPQYRTAVGNMIRRLADMANTQ-FITTT 202


>gi|197313737|ref|NP_001032262.2| structural maintenance of chromosomes 4 [Rattus norvegicus]
          Length = 1286

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 77  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 136

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 137 SKKLSVLIHNSDEHTDIQSCTVEVHFQKI 165


>gi|85374405|ref|YP_458467.1| ATP-dependent endonuclease, OLD family protein [Erythrobacter
          litoralis HTCC2594]
 gi|84787488|gb|ABC63670.1| predicted ATP-dependent endonuclease, OLD family protein
          [Erythrobacter litoralis HTCC2594]
          Length = 654

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++++ + I  FR  + L +  D   T  +G NGVGK+ +L+AI
Sbjct: 1  MRLETVYIKNFRAISELEINIDD-VTTLIGSNGVGKSCVLKAI 42


>gi|32476874|ref|NP_869868.1| RecF protein [Rhodopirellula baltica SH 1]
 gi|32447422|emb|CAD79011.1| putative RecF protein [Rhodopirellula baltica SH 1]
          Length = 387

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  + I+ +R+  SL +      T+  G NG GKTN+  ++  ++
Sbjct: 2  IHRIAITGYRSIRSLTVRLGE-LTVVTGPNGSGKTNLYRSLRLIA 45


>gi|291513683|emb|CBK62893.1| hypothetical protein AL1_01800 [Alistipes shahii WAL 8301]
          Length = 679

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          M+ ++ +K L +  F+    L + F    T   G N  GK+ + +A +++  G+
Sbjct: 1  MSKKVTLKELTLKNFKGIRDLAVKFGE-VTTIAGANATGKSTVFDAFTWVLFGK 53


>gi|170053090|ref|XP_001862515.1| structural maintenance of chromosomes 5 smc5 [Culex
           quinquefasciatus]
 gi|167873770|gb|EDS37153.1| structural maintenance of chromosomes 5 smc5 [Culex
           quinquefasciatus]
          Length = 1046

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 9/119 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-----RRAS 60
           KIK   + +F  Y       D    I +G NG GK+ I+ A+  L  G G      R +S
Sbjct: 7   KIKSTAVKDFVTYDVAIFYPDEHLNIIIGPNGTGKSTIVAAV-VLGMG-GHCKLLSRSSS 64

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             D  + G        A  +      +  +   T D   +   +I+   +   + L + 
Sbjct: 65  IEDYIKNGKEVAKVEVAIYKNA--KRETIMFNRTFDRSGLDRFEIDGTKVSHKEYLKRI 121


>gi|118161361|gb|ABK64044.1| putative DNA repair protein RecN [Janthinobacterium lividum]
          Length = 493

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 47/278 (16%), Positives = 88/278 (31%), Gaps = 33/278 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +F    ++ L F A  ++  G+ G GK+ +++A++    GRG      A V R
Sbjct: 2   LHTLSIRDFVIVDTIELEFSAGFSVLTGETGAGKSILIDALTLALGGRG-----DASVVR 56

Query: 67  IGSPSFF---------STFARVEGMEGLADISIKLETR--DDRSVRCLQINDVV--IRVV 113
            G+                A +   E   D    L  R  D+       IN +      +
Sbjct: 57  EGAAKADITADFSVSEVAQAWLVAHEFANDDGGALLRRVIDNAGRSKAYINGIPATAAQL 116

Query: 114 DELNKHL---------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
            EL   L         +      +   +  G +  R    ++    +   H      +  
Sbjct: 117 RELGDMLVDIHGQHAHQSLLKSEAQRALLDGQATAREAGAEQDARQVAALH----KRWRA 172

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L+R R    T           +E Q+ EL  K+     E     +               
Sbjct: 173 LVRQREEFETNAANVLYERERLEWQVGEL-EKLAAKPGEWTEITNEHSRLSHAASLLEGA 231

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
           + +L+  +    D    +      +KL     +D+  +
Sbjct: 232 QEALS-LISESEDHPIVSQLSALNQKLGKLVSVDAELQ 268


>gi|115377261|ref|ZP_01464471.1| RecF/RecN/SMC N terminal domain, putative [Stigmatella aurantiaca
          DW4/3-1]
 gi|310817991|ref|YP_003950349.1| RecF like family protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365737|gb|EAU64762.1| RecF/RecN/SMC N terminal domain, putative [Stigmatella aurantiaca
          DW4/3-1]
 gi|309391063|gb|ADO68522.1| RecF like family protein [Stigmatella aurantiaca DW4/3-1]
          Length = 388

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 7  IKFLNISEFRNYASLRLVFDA----QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          I+ L++    N  S  L  +        + +G NG GK+N++ AIS L+        + +
Sbjct: 5  IQSLHLQ---NLLSFGLEAEPVPLGDLNVIIGPNGSGKSNLIAAISLLAAT----PRTLS 57

Query: 63 DVTRIG 68
          +  R G
Sbjct: 58 EAIRAG 63


>gi|109287972|ref|YP_654666.1| hypothetical protein MIV094L [Invertebrate iridescent virus 3]
 gi|123868013|sp|Q196W6|VF050_IIV3 RecName: Full=Uncharacterized protein 094L
 gi|106073595|gb|ABF82124.1| hypothetical protein MIV094L [Aedes taeniorhynchus iridescent
          virus]
          Length = 829

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 9  FLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPG-RGFR 57
           L +  F+ Y S    F     T+  G +G GK+ IL A+ F   G  G R
Sbjct: 2  KLTLKNFKCYTSATFNFALDSTTLITGPSGQGKSTILLAVQFALFGMTGHR 52


>gi|330825265|ref|YP_004388568.1| ATP-dependent OLD family endonuclease [Alicycliphilus
          denitrificans K601]
 gi|329310637|gb|AEB85052.1| ATP-dependent OLD family endonuclease [Alicycliphilus
          denitrificans K601]
          Length = 674

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ--HTIFVGDNGVGKTNILEAI 47
          +K+  + I  FR     R+  D     TI VG N  GKT+ +EA+
Sbjct: 1  MKLCEIGIKNFRLLQDARMRLDTTGITTILVGPNNSGKTSTIEAM 45


>gi|172060845|ref|YP_001808497.1| ATPase-like protein [Burkholderia ambifaria MC40-6]
 gi|171993362|gb|ACB64281.1| ATPase-like protein [Burkholderia ambifaria MC40-6]
          Length = 391

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 3  ALNTLAIANYRSLRELIVPLAA-LNVVTGPNGSGKSSVYRALRLLA 47


>gi|149048336|gb|EDM00912.1| rCG63397 [Rattus norvegicus]
          Length = 946

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 77  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 136

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 137 SKKLSVLIHNSDEHTDIQSCTVEVHFQKI 165


>gi|86751449|ref|YP_487945.1| hypothetical protein RPB_4347 [Rhodopseudomonas palustris HaA2]
 gi|86574477|gb|ABD09034.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 385

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  L +S +R+   +RL       +  G NG GK+++  A+  L+
Sbjct: 2  ITRLAVSGYRSLRDVRLSLGP-LNVVTGANGTGKSSLYRALKLLA 45


>gi|59712605|ref|YP_205381.1| recombination and repair protein [Vibrio fischeri ES114]
 gi|197334469|ref|YP_002156829.1| DNA repair protein RecN [Vibrio fischeri MJ11]
 gi|59480706|gb|AAW86493.1| recombination and repair protein [Vibrio fischeri ES114]
 gi|197315959|gb|ACH65406.1| DNA repair protein RecN [Vibrio fischeri MJ11]
          Length = 555

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 59/206 (28%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I+ F    SL L      T   G+ G GK+  ++A+      R     + A + R
Sbjct: 2   LAHIKITHFAIVKSLELDLTKGMTTITGETGAGKSIAIDALGLCLGDR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVRCL-QINDVVI--RV 112
            G      T              +E  E        L     +  R    IN   +    
Sbjct: 57  QGEEKAEITVLFTLENNINAKRWLEDNELYDGNDCILRRVITKEGRSRGFINGSPVPAAQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L   L       +   +       +   LD+    +          +     +  ++
Sbjct: 117 LKTLGHLLINIHGQHAHHELMK--PEYQLNMLDQYAGHVSLLNKTRSRYQAWRQADNALK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
               ++     + +    IE Q+ EL
Sbjct: 175 Q---MIKHSQQNEAQKQLIEYQIKEL 197


>gi|78186857|ref|YP_374900.1| ATPase involved in DNA repair-like [Chlorobium luteolum DSM 273]
 gi|78166759|gb|ABB23857.1| ATPase involved in DNA repair-like protein [Chlorobium luteolum
          DSM 273]
          Length = 910

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +++    +  +R +   R+ FD   TI  G N  GK+ ++EA+ 
Sbjct: 1  MRLISATVRNYRIHRDTRVEFDPSRTIIGGGNETGKSTLVEALH 44



 Score = 41.4 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 73/219 (33%), Gaps = 29/219 (13%)

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           ER +  R  L  +G  D         ++A    +    RVE     + L+ E  ++E   
Sbjct: 703 ERSLSQRAVLERDGSDDPFGTLYAATEVARQAEEQFR-RVEQRARATKLLYELYREEQAL 761

Query: 223 HIK-------LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
             +         +TG+L   F     A  +   K   + R        T           
Sbjct: 762 DARRFSRPLAEKITGYLCCMFGPGLEAAVDYTGKSFSNIR---IQRGGT----------- 807

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL- 334
                +I  +  S G ++ V   + L+ A L++   G    ++ D+   + D  +   L 
Sbjct: 808 ----GSIGFSGLSGGMKEQVAAAVRLSIAELLAEGYGGTLPVVFDDAFTNTDPQRVQLLQ 863

Query: 335 --FRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371
                    G QI +   +   + SL  T   + ++ H+
Sbjct: 864 RMLDRAASQGLQIIILSCNPGEYSSLGATPVSLEVTAHR 902


>gi|45184642|ref|NP_982360.1| AAL182Wp [Ashbya gossypii ATCC 10895]
 gi|44979988|gb|AAS50184.1| AAL182Wp [Ashbya gossypii ATCC 10895]
          Length = 1231

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 93/273 (34%), Gaps = 31/273 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRAS 60
           + IK + I  F+ Y +   +  F   H + VG NG GK+N   AI F+        +R  
Sbjct: 1   MYIKKVIIRGFKTYKNKTEIDNFSPHHNVVVGFNGSGKSNFFAAIRFVLSDDYTNLKREE 60

Query: 61  YADVTRIGSPSFFSTFARV--EGMEGLADIS------IKLETRDDRSVRCLQINDVVIRV 112
              +   G+ S  S +  +   G E    +       I +            IN+     
Sbjct: 61  RRSLIYQGTSSVMSGYVEIVFHGAENRTLLGAQDGGVIHIRRTVGLKKDEYMINNKNASR 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGLS---------MERRRFLDRMVFA--IDPRHRRRMID 161
            D         +   +   I               ER + L+ ++ A   + + +  +  
Sbjct: 121 SDVQRLLESAGFSTSNPYNIVPQGRIVSLTNAQNRERLQLLEEVIGAKSFERKLKESLQK 180

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENF 221
            E   + R ++  E     +  + ++ +  EL    ++ R   +   +    E       
Sbjct: 181 METTEKNREKIRIELEEVEAKLNELDEERKELEKYNSLDRKRKMCQFALYDREL------ 234

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
            +   S+   LDG++  +   L E+Y ++L   
Sbjct: 235 -NEVTSMVEKLDGEYTNTLV-LSEQYIQELEKR 265



 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 11/100 (11%)

Query: 273  LIVDYCDKAITIAHGST--GEQKVV-LVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
            + V +  K     H     G QK V  + + LA           AP  L DEI A LD+ 
Sbjct: 1109 IEVSFNSKKDEQVHVEQLSGGQKTVCAIALILA-----IQMVDPAPFYLFDEIDAALDKQ 1163

Query: 330  KRNALFRIVTDIGSQI-FMTGTDKSVFDSLNETAKFMRIS 368
             R A+   V  + SQ  F+  T +   D +    +F R++
Sbjct: 1164 YRTAVAATVKQLSSQAQFICTTFRG--DMIAVADRFYRVN 1201


>gi|1352653|sp|P41508|P115_MYCHR RecName: Full=Protein P115
 gi|150165|gb|AAA25423.1| 115 kDa protein [Mycoplasma hyorhinis]
          Length = 979

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +K+  + I  F+++A  + + FD      VG NG GK+NI +AI   L     +  R  +
Sbjct: 2   LKLIKIEIEGFKSFADPISINFDGSVVGIVGPNGSGKSNINDAIRWVLGEQSAKQLRGLN 61

Query: 61  YADVTRIG-------SPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIR 111
             DV   G         +      + E    E     +I    +  +       ND  +R
Sbjct: 62  MDDVIFAGSKTVKPQEKAMVKLTFKNEDAIEETKQIFTISRLLKRGQGTNEYFYNDQPVR 121

Query: 112 VVD 114
             D
Sbjct: 122 YKD 124


>gi|319795621|ref|YP_004157261.1| DNA repair protein recn [Variovorax paradoxus EPS]
 gi|315598084|gb|ADU39150.1| DNA repair protein RecN [Variovorax paradoxus EPS]
          Length = 560

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + ++ + + +F    SL L      T+  G+ G GK+ +++A+  L+ G      + A  
Sbjct: 1  MALRRIALRDFVIVRSLELDLSGGFTVLTGETGAGKSILIDALQ-LALG----NRADAGA 55

Query: 65 TRIGSPSFFST 75
           R G+     +
Sbjct: 56 VREGAERLDVS 66


>gi|295837753|ref|ZP_06824686.1| DNA replication and repair protein RecF [Streptomyces sp. SPB74]
 gi|295826658|gb|EFG64966.1| DNA replication and repair protein RecF [Streptomyces sp. SPB74]
          Length = 76

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT-GTDKSVFDSLNETAKFMRISNHQA 372
            P+L+LD++ A LD  +R+ L   V   G Q+ +T   ++ V   L        ++    
Sbjct: 17  EPVLILDDVFAELDARRRDRLAEHVA-PGEQVLVTAAVEEDVPAPL--KGARYAVAEGTV 73


>gi|295115730|emb|CBL36577.1| hypothetical protein [butyrate-producing bacterium SM4/1]
          Length = 46

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++  ++ I  F++   + L       I VG N  GKT++L+A+  +
Sbjct: 1  MRFTYIRIRNFKSIRDMELSEIDSALILVGKNNTGKTSVLDAVRLM 46


>gi|258423173|ref|ZP_05686066.1| DNA repair protein RecN [Staphylococcus aureus A9635]
 gi|257846623|gb|EEV70644.1| DNA repair protein RecN [Staphylococcus aureus A9635]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAV 63


>gi|303310257|ref|XP_003065141.1| SMC proteins Flexible Hinge Domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|240104801|gb|EER22996.1| SMC proteins Flexible Hinge Domain containing protein [Coccidioides
           posadasii C735 delta SOWgp]
 gi|320033964|gb|EFW15910.1| condensin subunit Cut14 [Coccidioides posadasii str. Silveira]
          Length = 1179

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRIVEIIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKTKSPIGFEEYASISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|229525462|ref|ZP_04414867.1| hypothetical protein VCA_003090 [Vibrio cholerae bv. albensis
           VL426]
 gi|229339043|gb|EEO04060.1| hypothetical protein VCA_003090 [Vibrio cholerae bv. albensis
           VL426]
          Length = 656

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 103/313 (32%), Gaps = 27/313 (8%)

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-NDVVIRVVDEL----NK 118
           +       F +    ++         +K    DD S +  ++ N +     D L      
Sbjct: 311 LIEQEIIGFNNAQKHIKANNEELIKRLKKSASDDISEKVNRLLNSIFQESKDGLKYENYL 370

Query: 119 HLRISWLVPSMDRIFSGLSMER-----RRFLDRMVFAIDPRHRRRMIDFERLMRG---RN 170
            +       +   I S ++  +     R+ L   +  +D +    + DFE +      + 
Sbjct: 371 DINPVIFDFAESSIKSEITESKELLNQRKELQETLALLDKK-LDAVPDFETVREQIEAKG 429

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-------YVQKENFPH 223
           R+        +   S+  ++A+   +IN     +   L     E           E+   
Sbjct: 430 RIEASIAHSKTILESLMEELAQCKTQINENEARLDATLIQQNAEDFEGKRNQQIAEHLVE 489

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AI 282
           +K  +  F      ++   L++    K     +   +  +  I P   +L +   D   +
Sbjct: 490 MKDIVDAFKAQLIKENIATLEKRIKSKFDSLERKSELIAKVSINPETFNLTLADLDGLPL 549

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDI 341
                S GE++++ V I  A    ++  +G     ++D     LD   R  L      + 
Sbjct: 550 DTKRLSAGERQLLSVAILWA----LAEVSGKEIPTIIDTPMGRLDGKHRTKLVENYFPEA 605

Query: 342 GSQIFMTGTDKSV 354
             Q+ +  TD+ +
Sbjct: 606 AGQVILLSTDEEI 618


>gi|183980180|ref|YP_001848471.1| ATPase [Mycobacterium marinum M]
 gi|183173506|gb|ACC38616.1| predicted ATPase [Mycobacterium marinum M]
          Length = 387

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
          +  +R+   L +    Q  +  G NG GK+N+  A+  ++     R  + A + R G
Sbjct: 7  VENYRSLRQLVVPLH-QLNVVTGANGSGKSNLYRALRLMA--DSARNGAVAALAREG 60


>gi|120613396|ref|YP_973074.1| SMC domain-containing protein [Acidovorax citrulli AAC00-1]
 gi|120591860|gb|ABM35300.1| SMC domain protein [Acidovorax citrulli AAC00-1]
          Length = 944

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 27/162 (16%)

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           A+ G  +  AR   I  L S +  Y +       +L     ++   D       +     
Sbjct: 760 AQAGTAVMNARESYIEVLRSTVRRYRKNIQ----ELGALAGVEVAADLPLLENDD----- 810

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLI 307
                        T++      +   +  K    +     S G+Q  V+  + L    L 
Sbjct: 811 -------------TVLAQAGLKVHFAFDGKGSIGLNDGEASGGQQ--VIKSLILLVGLLK 855

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
              +G    + +DE  AHLD      +   +    +Q  +T 
Sbjct: 856 DEESGSGGFVFIDEPFAHLDVRNIQLVGHFLRSTQAQYVLTT 897



 Score = 40.3 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 69/236 (29%), Gaps = 44/236 (18%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-- 63
            ++ L +  +     + L  DA      G NG GKT +L+A+  L    G R ++  D  
Sbjct: 3   HLQTLELVHWDYCQRVALPLDASIITIAGPNGSGKTTLLDAMRTLL---GLRCSAPRDYR 59

Query: 64  -VTRI-GSPSFFSTFARVEGMEGLADISIKLETRD------DRSVRCLQINDVVIRVVDE 115
              R  G+ + +         +G    S     R         + R  +      R    
Sbjct: 60  TYARHAGAQTAWLRAVVDNRPQGRQTSSRPFARRLLYADQVTLACRIDKNGGDWQRRYCL 119

Query: 116 LNKHLRISWL--VPSMDRIFSGLSMERR------------RFLDRMVFAIDP--RHR--- 156
           L+  + I  L   P  D  F G+    R            R L       D         
Sbjct: 120 LDGDVSIEQLRDTPEKDLGFMGVEAWGRVLGAAGLSPAIARVLSLEQGQTDRLCEFSPRE 179

Query: 157 ------------RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                       + +  +++    + +L  E            AQ+ EL  ++   
Sbjct: 180 LLRLVFDVFGDQQVLDAYDQAREHQQQLSREMAQAERELDHSRAQLTELSNRVTSY 235


>gi|194334158|ref|YP_002016018.1| ABC transporter-like protein [Prosthecochloris aestuarii DSM 271]
 gi|194311976|gb|ACF46371.1| ABC transporter related [Prosthecochloris aestuarii DSM 271]
          Length = 217

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 16/153 (10%)

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC-ALKEEYAKKLFDG--RKMDSMSRRT 264
           +S        +++F   +L          DQ FC +++E+ A  L +   RK +++ +  
Sbjct: 61  ISLWNQSMKTEQDFKQARLKTGFLFQDPDDQLFCPSVEEDIAFALLNRGVRKDEALRKVD 120

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
            I        + +  K +   H S G++++V +        LI+       +LLLDE +A
Sbjct: 121 AIC---DRFAIGHLRKRVPF-HLSWGQKRLVSLA-----GILITQ----PELLLLDEPTA 167

Query: 325 HLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS 357
             DE   + +   +   G  + ++  D+    +
Sbjct: 168 GADERVVSTIVEYLGSYGGTVIISSHDRDFLAA 200


>gi|322376075|ref|ZP_08050585.1| putative ATP/GTP-binding protein [Streptococcus sp. C300]
 gi|321279025|gb|EFX56068.1| putative ATP/GTP-binding protein [Streptococcus sp. C300]
          Length = 480

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 29/55 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
          I+   I+   NY  + L F    TI++G+NGVGKT IL  + +L      R + Y
Sbjct: 4  IEKFKINNLHNYYDVELNFKNDKTIYIGENGVGKTTILSMLYYLLNLNYERLSKY 58


>gi|296491125|gb|DAA33198.1| structural maintenance of chromosomes 4 [Bos taurus]
          Length = 344

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSF 72
               + +    S   
Sbjct: 139 SKKLSVLI-HNSDEH 152


>gi|257425645|ref|ZP_05602069.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257428306|ref|ZP_05604704.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257430943|ref|ZP_05607323.1| DNA repair protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257436545|ref|ZP_05612589.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          M876]
 gi|282914327|ref|ZP_06322113.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          M899]
 gi|282919296|ref|ZP_06327031.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          C427]
 gi|282924621|ref|ZP_06332289.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          C101]
 gi|293503402|ref|ZP_06667249.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          58-424]
 gi|293510418|ref|ZP_06669124.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          M809]
 gi|293530958|ref|ZP_06671640.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          M1015]
 gi|257271339|gb|EEV03485.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          55/2053]
 gi|257275147|gb|EEV06634.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          65-1322]
 gi|257278373|gb|EEV09009.1| DNA repair protein [Staphylococcus aureus subsp. aureus 68-397]
 gi|257283896|gb|EEV14019.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          M876]
 gi|282313456|gb|EFB43851.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          C101]
 gi|282317106|gb|EFB47480.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          C427]
 gi|282321508|gb|EFB51833.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          M899]
 gi|290920226|gb|EFD97292.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          M1015]
 gi|291095068|gb|EFE25333.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          58-424]
 gi|291466782|gb|EFF09302.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          M809]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAV 63


>gi|241668317|ref|ZP_04755895.1| hypothetical protein FphipA2_06101 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876850|ref|ZP_05249560.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842871|gb|EET21285.1| predicted protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 574

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 56/372 (15%), Positives = 120/372 (32%), Gaps = 65/372 (17%)

Query: 8   KFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
             L I   +N  + + L    + TI +G+NG GK+ ILE+I      +         +  
Sbjct: 4   NHLTIIPHKNIKNKICLNITKKQTILIGENGSGKSAILESIFKTYSYK-----KDVRIVG 58

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             S              G+ +    L        +   IN     +         +  LV
Sbjct: 59  FSS--------------GMNESFTYLFKHLTLENKKKIINQENSIINTFYFNSSWVFVLV 104

Query: 127 PSMDRIFSGLSMERRRFL--DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                +     +  R FL   R+V     ++      + +L               S+  
Sbjct: 105 FFATSLKENGLV--REFLKKKRLVSESSVKYDLTTRLYFKL-----------KIPKSYVG 151

Query: 185 SIEAQMAELGVKINIA--RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC- 241
           +I+  + +   K ++   R   +N     I             L   G+++  F  S   
Sbjct: 152 TIQRSLEKEKEKYDLKSIRRSFLNLFLERI-------------LKFNGYVNYDFQDSIPK 198

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRS------DLIVDYCDKAITIAHGSTGEQKVV 295
              +  A  ++D    +     +     +       D+ + + D  + +   S GE +++
Sbjct: 199 EFVQIKASNIYDIFSKNIEEISSFFSIFKDSLIDFTDINLLFKDG-VELNSLSDGEYQLL 257

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSV 354
            +    A   L  +      I L DE+ +HL     + ++  +  I  +   T    +++
Sbjct: 258 AI---YAMIDLFDDNR---TIFLFDEVDSHLHYKNISKIWECLDHIEGKCIATSHISETI 311

Query: 355 FDSLNETAKFMR 366
            ++  +  K++ 
Sbjct: 312 LNACLDCIKYVE 323


>gi|190573467|ref|YP_001971312.1| hypothetical protein Smlt1466 [Stenotrophomonas maltophilia
          K279a]
 gi|190011389|emb|CAQ45004.1| conserved hypothetical protein [Stenotrophomonas maltophilia
          K279a]
          Length = 396

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          T  + ++ L I+ +R+   L L       +  GDNG GK+++  A+  L+
Sbjct: 8  TPAM-LQTLAIAHYRSLHGLVLPLQP-LNVVTGDNGSGKSSLYRALRLLA 55


>gi|182414634|ref|YP_001819700.1| DNA repair protein RecN [Opitutus terrae PB90-1]
 gi|177841848|gb|ACB76100.1| DNA repair protein RecN [Opitutus terrae PB90-1]
          Length = 553

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 99/289 (34%), Gaps = 59/289 (20%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L +        + L F+A  T   G+ G GK+ +L A+S L+  R  +   
Sbjct: 1   MLQSLRIRNLAL-----LEEVALDFEAGFTAVTGETGAGKSILLGALSLLAGERVEKT-- 53

Query: 61  YADVTRIGSPSF--------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
              + R G+ +                +  A +E       + I   +        + +N
Sbjct: 54  ---IIRQGAAACEVEAALYFESSKRIDAVLAELELPACEDGLLILKRSVPREKAPKITVN 110

Query: 107 DV--VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID------------ 152
                +  +  L +H    W+             E RR L +  + ++            
Sbjct: 111 GSLATLAALQRLGEH----WIDFH-------GPSEPRRLL-KEAWQLELLDLFGRATEAR 158

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSL 211
             ++     +   +  R R+ +E          ++AQ+A +  +++     E I  L   
Sbjct: 159 ANYQEAYRAWRGAVAERERIASETKLSPDQIEFLQAQLARIEALELTD---EAIETLERD 215

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
                  +    +  +L   L G+      +++   A  L + R+++++
Sbjct: 216 FARMSSAQELIGLTQTLENGLTGE-----ASVQTTLAALLREARQVEAL 259


>gi|218780891|ref|YP_002432209.1| ATPase-like protein [Desulfatibacillum alkenivorans AK-01]
 gi|218762275|gb|ACL04741.1| ATPase-like protein [Desulfatibacillum alkenivorans AK-01]
          Length = 369

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 13/102 (12%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-RG------FRRA 59
          I  + I  FR   + R+       +++G+NG GKT++L+A+  +    RG      FR++
Sbjct: 2  ITEIYIDNFRCLTNFRIEPGD-FQLWLGENGSGKTSVLDALRSIQRLMRGEHVDDIFRKS 60

Query: 60 SYADVTRIGSPS--FFSTFARVEGMEGLADISIKLETRDDRS 99
          S   +T   + +   F     ++      +++++  T++D+ 
Sbjct: 61 S---LTTWDARNTQVFGFSMLIDEENYKYELTVEYSTQEDKK 99


>gi|157414318|ref|YP_001485184.1| DNA repair protein RecN, ABC transporter [Prochlorococcus marinus
           str. MIT 9215]
 gi|157388893|gb|ABV51598.1| DNA repair protein RecN, ABC transporter [Prochlorococcus marinus
           str. MIT 9215]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 64/166 (38%), Gaps = 26/166 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++KI+ + +        + + F+    I  GD+G GK+ IL++++ L  G       
Sbjct: 1   MLIQLKIENIAL-----IEIIEINFEKGLNIITGDSGSGKSLILDSLNVLFGGT---NIP 52

Query: 61  YADVTRIGSPSF-----FSTFARV---------EGMEGLADISIKLETRDDRSVRCLQIN 106
              + R G         FS+ +++         EG      I  K   ++++ +    +N
Sbjct: 53  LKHLIRPGKDHCMIEAIFSSSSQINNWLISNGFEGSNSELIIKRKSFRKNNKILSKYNVN 112

Query: 107 DVVIRV--VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           ++ I    +++L + L         D        +RR  +D +   
Sbjct: 113 NLSINKTLLEKLGRFL--IDFAGQSDTFIFDTLDKRRTIIDDLASQ 156


>gi|226360081|ref|YP_002777859.1| DNA repair protein RecN [Rhodococcus opacus B4]
 gi|226238566|dbj|BAH48914.1| DNA repair protein RecN [Rhodococcus opacus B4]
          Length = 590

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 34/218 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I+I  L +      +     F    T+  G+ G GKT ++ ++  LS  R     +
Sbjct: 1   MLAEIRIDNLGV-----ISEASAQFHEGLTVLTGETGAGKTMVVTSLHLLSGAR-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADIS---------IKLETRDDRSVRCLQINDVVIR 111
            A   R+G+P       R    EG   +             E  +D ++  ++      R
Sbjct: 51  DAGRVRLGAPRA-VVEGRFMTDEGSEHVERAVSRLLESTGAERDEDGTIIAVRTVGSDGR 109

Query: 112 VVDELNK--HLRISWLVPSMDRIFSGLSMERRRFL--DRMVFAIDPRHRR-----RMIDF 162
               L             +   +      ++ R L  D+   A+D R         +  +
Sbjct: 110 SRAHLGGRSVPAGVLSEFTDPLLTVHGQNDQLRLLRPDQQCAALD-RFADKTVGPLVARY 168

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
               + RN  +T    +    +    ++A+   ++  A
Sbjct: 169 R---KHRNEWMT-ARSELIERTGRTRELAQEADQLTFA 202


>gi|225849341|ref|YP_002729505.1| DNA repair protein RecN [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644175|gb|ACN99225.1| DNA repair protein RecN [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 532

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 63/165 (38%), Gaps = 15/165 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I +F     + +    +  +F G+ GVGK+ +++AI+F+   +G           
Sbjct: 2   LSSVRIKKFLYIKDVEIDLHPKMNVFTGETGVGKSLVIDAITFVLGEKG----------N 51

Query: 67  IGSPSFFSTFARVEGMEGLADIS-IKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                +      V+       I  I  + ++ +S+  L    V   ++ E+++ L     
Sbjct: 52  YEEEDYVELTFEVDNDYSEDGILVIARQIKNGKSLYYLNGRKVGKSLIQEVSRDLIEVHG 111

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDP--RHRRRMIDFERLMRG 168
                R+F       R   D+ +   D     ++  I +++L + 
Sbjct: 112 QHYSQRLFDKD--YHREVYDKYLKIEDKLQEFQQLYIQYQKLKKE 154


>gi|218782709|ref|YP_002434027.1| ATPase-like protein [Desulfatibacillum alkenivorans AK-01]
 gi|218764093|gb|ACL06559.1| ATPase-like protein [Desulfatibacillum alkenivorans AK-01]
          Length = 342

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 14/112 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K L+I  FR   ++RL      ++ VGDN  GK+++LEA + L   R F  + + +V
Sbjct: 1   MLLKNLDIGAFRGMKNVRLDDLPPFSVIVGDNNAGKSSVLEAAALL--LRPFDLSQWFNV 58

Query: 65  TRIGSPSFFSTFARV------------EGMEGLADISIKLETRDDRSVRCLQ 104
            R                         EG      I +K    D+      +
Sbjct: 59  ARQRDSDLAVVDGVWSMFPSKEPLDVEEGPVQTQHIELKATIGDEDRNFSAR 110


>gi|116284089|gb|AAI18123.1| SMC4 protein [Bos taurus]
          Length = 343

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSF 72
               + +    S   
Sbjct: 139 SKKLSVLI-HNSDEH 152


>gi|24375286|ref|NP_719329.1| hypothetical protein SO_3792 [Shewanella oneidensis MR-1]
 gi|24350091|gb|AAN56773.1|AE015813_1 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 390

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L IS +R    + L    +  +  G NG GK+N+ +A+  L+
Sbjct: 2  LTTLAISNYRTLREIVLPLG-RLNVVTGANGSGKSNLYKALRLLA 45


>gi|68062825|ref|XP_673421.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56491259|emb|CAI02389.1| hypothetical protein PB300714.00.0 [Plasmodium berghei]
          Length = 197

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYAS---LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  + I   R+Y      +L F +  TI  G+NG GK+ I+E +     G
Sbjct: 4  LDKIGIQGIRSYCDEYSQQLEFSSPITIIYGNNGSGKSTIIECLKVNCTG 53


>gi|314936358|ref|ZP_07843705.1| DNA repair protein RecN [Staphylococcus hominis subsp. hominis
          C80]
 gi|313654977|gb|EFS18722.1| DNA repair protein RecN [Staphylococcus hominis subsp. hominis
          C80]
          Length = 557

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIDELEIHFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAI 63


>gi|288803398|ref|ZP_06408831.1| DNA repair protein RecN [Prevotella melaninogenica D18]
 gi|288334218|gb|EFC72660.1| DNA repair protein RecN [Prevotella melaninogenica D18]
          Length = 556

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 73/241 (30%), Gaps = 30/241 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  +     L + F +  ++  G+ G GK+ IL AI  L   R     + +   +
Sbjct: 2   LKHLYIKNYTLIDQLDIAFHSGFSVITGETGAGKSIILGAIGLLLGNR-----ADSKQIK 56

Query: 67  IGS------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
            G                F +F   + ++   + +I              IND  + +  
Sbjct: 57  QGEKKCTIEAHFDLSNYGFESFFEEQDVDFEPEDTIVRRELTATGKSRAFINDTPVSLQM 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
                 ++  +      +       +   +D ++             ++           
Sbjct: 117 MRVLGEQLIDIHSQHQNLLLQKDDFQLNVVD-IIAQDTKELAAYRSAYQ----------- 164

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           +        S +  Q+++        R +  N L +  +   ++E       +L+   D 
Sbjct: 165 DYKETERRLSDMREQISKAQENEEFMRFQF-NELDNANLIEGRQEELEQESETLSHSEDI 223

Query: 235 K 235
           K
Sbjct: 224 K 224


>gi|222099021|ref|YP_002533589.1| ATPase-like protein [Thermotoga neapolitana DSM 4359]
 gi|221571411|gb|ACM22223.1| ATPase-like protein [Thermotoga neapolitana DSM 4359]
          Length = 412

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 15/89 (16%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
            + I+ +    F+++  L++       + +G N  GK+N +    FL            
Sbjct: 6  GNMFIEKIEGKNFKSFDELKVDLG-NFNVVIGPNASGKSNFIRIFEFL-----------R 53

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIK 91
          D+   G  +  S      G E + ++ I 
Sbjct: 54 DIANFGLDNAISLQG---GHEYIRNMKIG 79


>gi|207723345|ref|YP_002253744.1| chromosome segregation protein smc [Ralstonia solanacearum MolK2]
 gi|206588544|emb|CAQ35507.1| putative chromosome segregation protein smc [Ralstonia solanacearum
           MolK2]
          Length = 1575

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           +++  + ++ F+++          Q    VG NG GK+NI++A+   L   R    R  S
Sbjct: 1   MRLSSIKLAGFKSFVDPTNFHVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRAAELRGES 60

Query: 61  YADVTRIGS--------PSFFSTFARVEGM-----EGLADISIKLETRDDRSVRCLQIND 107
             DV   GS         S    F   EG         A+I++K     D +     IN+
Sbjct: 61  MQDVIFNGSTQRKPAGRASVELVFDNAEGRAAGQWSQYAEIAVKRVLSRDGTS-SYFINN 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 QAVRRRD 126


>gi|224534950|ref|ZP_03675519.1| p115 protein [Borrelia spielmanii A14S]
 gi|224513890|gb|EEF84215.1| p115 protein [Borrelia spielmanii A14S]
          Length = 815

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++     L      +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIALLGFKSFLNRQELEIGENLSFIVGPNGCGKSNLIDAVRFCMGEDNLKFLRVED 60

Query: 61 YADVT---RIGSPSFFSTFARVEGMEGLADI 88
           +D+    ++G  +F         ++G    
Sbjct: 61 ISDLISVSKLGKSNFAEITLFFSNIDGEKST 91


>gi|92119275|ref|YP_579004.1| hypothetical protein Nham_3841 [Nitrobacter hamburgensis X14]
 gi|91802169|gb|ABE64544.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 895

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV---TDIGSQ 344
           S GE++ + +  FLA  + +    G    +++D+  + LD  +  A+ + +      G Q
Sbjct: 641 SEGEKRALALAGFLAELKEVGARHG----IVVDDPVSSLDHARMEAVAKRLVKEAAAGRQ 696

Query: 345 IFMTGTDKSVFDSLNETAKFMRI 367
           + +   +     ++ E A+ +++
Sbjct: 697 VIIFTHNLFFHYAVLEAAQDLKV 719


>gi|327266850|ref|XP_003218217.1| PREDICTED: structural maintenance of chromosomes protein 4-like
           [Anolis carolinensis]
          Length = 1279

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 73  APRLMITHIVNQNFKSYAGEQILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 132

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              +E      
Sbjct: 133 SKKLSVLIHNSDEHSDIQSCTIEVHFQKI 161


>gi|302333196|gb|ADL23389.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
          JKD6159]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAV 63


>gi|222480011|ref|YP_002566248.1| AAA ATPase [Halorubrum lacusprofundi ATCC 49239]
 gi|222452913|gb|ACM57178.1| AAA ATPase [Halorubrum lacusprofundi ATCC 49239]
          Length = 577

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 297 VGIFLAHARLISNT-TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF 355
           +   +A+ R +  + T     ++ DE  ++LD + R  L   +     QI  T +DKS+ 
Sbjct: 496 ISFAVAYNRFVRESDTTEWSTIVCDEPFSNLDAEGRVNLLEFIESCDEQIICTSSDKSLL 555

Query: 356 DSLNETAKFMR 366
           D   +T +  R
Sbjct: 556 DEFPKTGQLTR 566


>gi|149634592|ref|XP_001512851.1| PREDICTED: similar to SMCD [Ornithorhynchus anatinus]
          Length = 1238

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 86/275 (31%), Gaps = 43/275 (15%)

Query: 8   KFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADV 64
           K + I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R      
Sbjct: 25  KEVIIQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP----- 79

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                       A +    G   IS  +E   D S   L I+   + +   +       +
Sbjct: 80  --------EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYF 131

Query: 125 LV------PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNRLLT 174
           L         +  +       R           +P +  +     ++       R +LL 
Sbjct: 132 LDKKMVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLKLLR 181

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
           E      +    + +   L  +    R + IN L   I E +        +L+     D 
Sbjct: 182 EVAGTRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQKWDK 239

Query: 235 KFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
                   +   Y ++L + R    +  ++R   G
Sbjct: 240 MRRALEYTI---YNQELNETRAKLDELSAKRETSG 271



 Score = 39.9 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 929  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 986

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 987  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1046

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1047 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSAESERGSGSQS 1106

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1107 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1156

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1157 PAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 1203


>gi|144897938|emb|CAM74802.1| DNA repair protein RecN [Magnetospirillum gryphiswaldense MSR-1]
          Length = 555

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L L F    ++F G+ G GK+ +L+++S     R     + + + R
Sbjct: 2  LASLSIRDVVLIEKLDLSFAGGLSVFTGETGAGKSILLDSLSLTLGAR-----ADSGLVR 56

Query: 67 IGSPSFFST 75
           G+P     
Sbjct: 57 HGAPQLTVI 65


>gi|125577599|gb|EAZ18821.1| hypothetical protein OsJ_34357 [Oryza sativa Japonica Group]
          Length = 230

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 13/123 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y  L      +  +  G NG GK +++            R AS     +
Sbjct: 34  IVEIELLNFMTYDRLACHPGPRLNLVAGPNGSGKGSLVLG----------RAASVGAFDK 83

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  S      ++       +  I++  + D   +   + DV      +L +  + +  V
Sbjct: 84  RGEESG---HVKISLSGNTPEHIIRITRKIDTKNKSEWLLDVFTTRPIQLLEETQKAVGV 140

Query: 127 PSM 129
           P +
Sbjct: 141 PDL 143


>gi|118619974|ref|YP_908306.1| ATPase [Mycobacterium ulcerans Agy99]
 gi|118572084|gb|ABL06835.1| predicted ATPase [Mycobacterium ulcerans Agy99]
          Length = 387

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
          +  +R+   L +    Q  +  G NG GK+N+  A+  ++     R  + A + R G
Sbjct: 7  VENYRSLRQLVVPLH-QLNVVTGANGSGKSNLYRALRLMA--DSARNGAVAALAREG 60


>gi|148235651|ref|NP_001081371.1| structural maintenance of chromosomes protein 4 [Xenopus laevis]
 gi|1722855|sp|P50532|SMC4_XENLA RecName: Full=Structural maintenance of chromosomes protein 4;
           Short=SMC protein 4; Short=SMC-4; AltName:
           Full=Chromosome assembly protein XCAP-C; AltName:
           Full=Chromosome-associated protein C
 gi|563812|gb|AAA64679.1| XCAP-C [Xenopus laevis]
          Length = 1290

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  R+   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 73  APRLMITHIVNQNFKSYAGERILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 132

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 133 SKKLSVLIHNSDEHKDVQSCTVEVHFQKI 161


>gi|304373284|ref|YP_003856493.1| Protein P115 [Mycoplasma hyorhinis HUB-1]
 gi|304309475|gb|ADM21955.1| Protein P115 [Mycoplasma hyorhinis HUB-1]
          Length = 979

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +K+  + I  F+++A  + + FD      VG NG GK+NI +AI   L     +  R  +
Sbjct: 2   LKLIKIEIEGFKSFADPISINFDGSVVGIVGPNGSGKSNINDAIKWVLGEQSAKQLRGLN 61

Query: 61  YADVTRIG-------SPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIR 111
             DV   G         +      + E    E     +I    +  +       ND  +R
Sbjct: 62  MDDVIFAGSKTVKPQEKAMVKLTFKNEDAIEETEQIFTISRLLKRGQGTNEYFYNDQPVR 121

Query: 112 VVD 114
             D
Sbjct: 122 YKD 124


>gi|298736852|ref|YP_003729382.1| hypothetical protein HPB8_1361 [Helicobacter pylori B8]
 gi|298356046|emb|CBI66918.1| conserved hypothetical protein [Helicobacter pylori B8]
          Length = 1041

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 35/179 (19%)

Query: 10  LNISEFRNYA---------SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           L +  FRN           +          I VG+N VGK+N+LEA+            +
Sbjct: 8   LKLHHFRNLGRNLPAELLLNSSFEKHGGLVILVGENNVGKSNVLEALKIF---------N 58

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV-VDELNKH 119
            ADV       +F      + +  L + +I        S   L+I    +   + EL+K 
Sbjct: 59  DADVKLCSEKDYFKAHESEDAVLNLEEETILDHKTIGFSCVDLKIQTKEVSEGLKELSKI 118

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMRGRNRLL 173
           L           +F G       F++ ++      +    ++ ++       R  N LL
Sbjct: 119 LISYPFC-----VFVGS------FINLIMSYGVLDSFLKSYKEKLKLSSFSTRQANHLL 166


>gi|262038191|ref|ZP_06011585.1| DNA repair protein RecN [Leptotrichia goodfellowii F0264]
 gi|261747772|gb|EEY35217.1| DNA repair protein RecN [Leptotrichia goodfellowii F0264]
          Length = 552

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L ++      ++ L F++      G+ G GK+ IL+ IS L   R     + A++ R
Sbjct: 2  LRELRLNNLAIIKNMDLEFNSNMITLTGETGAGKSIILDGISLLIGER-----NQAEMIR 56

Query: 67 IGSPSFFSTFA 77
           G  S F+   
Sbjct: 57 TGEESLFAEGV 67


>gi|213626071|gb|AAI70550.1| (XCAP-C) [Xenopus laevis]
          Length = 1290

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  R+   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 73  APRLMITHIVNQNFKSYAGERILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 132

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 133 SKKLSVLIHNSDEHKDVQSCTVEVHFQKI 161


>gi|212694906|ref|ZP_03303034.1| hypothetical protein BACDOR_04443 [Bacteroides dorei DSM 17855]
 gi|237710746|ref|ZP_04541227.1| DNA repair protein recN [Bacteroides sp. 9_1_42FAA]
 gi|237727136|ref|ZP_04557617.1| DNA repair protein recN [Bacteroides sp. D4]
 gi|265750420|ref|ZP_06086483.1| DNA repair protein RecN [Bacteroides sp. 3_1_33FAA]
 gi|212662466|gb|EEB23040.1| hypothetical protein BACDOR_04443 [Bacteroides dorei DSM 17855]
 gi|229433992|gb|EEO44069.1| DNA repair protein recN [Bacteroides dorei 5_1_36/D4]
 gi|229455468|gb|EEO61189.1| DNA repair protein recN [Bacteroides sp. 9_1_42FAA]
 gi|263237316|gb|EEZ22766.1| DNA repair protein RecN [Bacteroides sp. 3_1_33FAA]
          Length = 553

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 65/205 (31%), Gaps = 27/205 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  +    +L + F    ++  G+ G GK+ IL AI  L   R     +     +
Sbjct: 2   LQSIYIQNYALIDTLDISFTPGFSVITGETGAGKSIILGAIGLLLGQR-----ADIKAIK 56

Query: 67  IGSPSFFST-------------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
            G+                   F + +      +  I+ E       R   IND      
Sbjct: 57  KGANKCIVEARFNISAYQMEPFFTQRDLEYDPNECIIRRELYASGKSRAF-INDTPASLA 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID---PRHRRRMIDFERLMRG 168
            + EL + L           +       +   LD ++   D     ++    +++ + + 
Sbjct: 116 QMKELGEKLIDV--HSQHQNLLLNSEGFQLNVLD-ILAQNDNELSAYKNIYTEYKNVCKQ 172

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL 193
               +T+          I  Q+ +L
Sbjct: 173 LADFITQAEQSRKDEDYIRFQLEQL 197


>gi|171694914|ref|XP_001912381.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947699|emb|CAP59861.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1320

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRN---YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ L+I   R+   +    + F+   T+ VG NG GKT ++E + + + G
Sbjct: 3  RIEKLSILGVRSFSPHEQQAIAFNTPLTLIVGYNGSGKTTVIECLKYATTG 53


>gi|29829468|ref|NP_824102.1| hypothetical protein SAV_2926 [Streptomyces avermitilis MA-4680]
 gi|29606576|dbj|BAC70637.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 684

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEFRN-YASLRLVF----DAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K+  L +  FR  Y    L           +  G+NG GKT +L A ++   G+
Sbjct: 1  MKLLRLTLDNFRAFYGRQTLDLAVNDSKPAVLIFGNNGAGKTTLLNAFAWALYGK 55


>gi|257457931|ref|ZP_05623090.1| DNA repair protein RecN [Treponema vincentii ATCC 35580]
 gi|257444644|gb|EEV19728.1| DNA repair protein RecN [Treponema vincentii ATCC 35580]
          Length = 563

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 44/213 (20%), Positives = 80/213 (37%), Gaps = 25/213 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ +++        L L F+A   +  G+ G GK+ ++ A+SFL  G+       AD+ R
Sbjct: 2   LETISVKNIALIDELSLDFNAHLNVLSGETGAGKSILIGALSFLLGGK-----VTADIIR 56

Query: 67  IGSPSFFSTFARV------EGMEGLADISIKLETRDDRSVRCLQIND----------VVI 110
            G+     +          E    L +  I+ E       R L+ N           V  
Sbjct: 57  TGTAEAAVSGTFYLANTHPEAAAWLNERGIEPENNRILLRRTLKENGRGSIWIQDAQVSR 116

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
             ++E    L           +F   + E RRFLD     +D   R   + + RL   + 
Sbjct: 117 SELEEFTSFLVDIHGQHDHQSLFK--TAEHRRFLDSYAGILDEV-REFSVLYTRLAEIKA 173

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           +L T    +       +  +A +  +I+ AR++
Sbjct: 174 KLETIRRSEKERTERTD-YLAFVIDEIDNARLQ 205


>gi|255282366|ref|ZP_05346921.1| putative RecF/RecN/SMC N domain protein [Bryantella formatexigens
           DSM 14469]
 gi|255266950|gb|EET60155.1| putative RecF/RecN/SMC N domain protein [Bryantella formatexigens
           DSM 14469]
          Length = 618

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 11/105 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAIS---------FLSPGR 54
           + I  + + +F+ YA  + +  + Q  + +G+N +GK+ I EA+            S  R
Sbjct: 1   MYISKITLKDFKAYADTVIIEVNRQFNVIIGENNIGKSTIFEALFLWKKCYDETLTSNKR 60

Query: 55  GFRRASYADVTRIGSPSFFSTFARVEGMEG-LADISIKLETRDDR 98
            F   S           F       +   G      I++E ++D 
Sbjct: 61  DFYSQSVQLYISFDELYFLRITKDEDLFYGTKRTCEIEIEFKEDN 105


>gi|123503015|ref|XP_001328416.1| SMC flexible hinge domain protein [Trichomonas vaginalis G3]
 gi|121911359|gb|EAY16193.1| SMC flexible hinge domain protein, putative [Trichomonas vaginalis
            G3]
          Length = 1155

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 58/166 (34%), Gaps = 26/166 (15%)

Query: 228  LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD------LIVDYCDKA 281
            L    +   + +F  + + +AK   +           L  P   +      + V + D  
Sbjct: 976  LDFKKNDAIEHTFAQISDNFAKIFQELVPTGQGVLSLLKNPDDDNKAVGIGIRVRFGDNT 1035

Query: 282  ITIAHG-------STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
              +          S G+Q +V + +  A           AP  L+DE  A LD + R A+
Sbjct: 1036 EEVGTAATSMMQLSGGQQSLVALALVFA-----IQKFSPAPFYLMDESDAALDPNHRKAV 1090

Query: 335  FRIVTDIG--------SQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
              ++T +         +QI +T     + +S  +    ++  NH  
Sbjct: 1091 ADLITKLSKPQDDVAPAQIILTSFKPELLESCEKLFAIVQEKNHSV 1136



 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 3  NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + I IK + I  F++Y+       F       VG NG GK+N   AI F
Sbjct: 2  SGIHIKRVTIHGFKSYSDTVTFGPFSPGTNAVVGLNGSGKSNFYNAIEF 50


>gi|115728772|ref|XP_780691.2| PREDICTED: similar to chondroitin sulfate proteoglycan 6 (bamacan)
           [Strongylocentrotus purpuratus]
 gi|115959469|ref|XP_001183387.1| PREDICTED: similar to chondroitin sulfate proteoglycan 6 (bamacan)
           [Strongylocentrotus purpuratus]
          Length = 156

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 260 MSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
            +         +D+ V +  KA     +   S G++ +V + +  A           AP 
Sbjct: 24  RNGYLTATSRSTDITVSFSGKAGETREMQQLSGGQKSLVALTLIFA-----IQKCDPAPF 78

Query: 317 LLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDS 357
            L DEI + LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 79  YLFDEIDSALDAMHRKAVADMIHELAANAQFITTTFRPELLES 121


>gi|114590138|ref|XP_001157529.1| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]
 gi|114590140|ref|XP_001157906.1| PREDICTED: hypothetical protein isoform 11 [Pan troglodytes]
          Length = 1230

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|88195326|ref|YP_500130.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus NCTC
          8325]
 gi|87202884|gb|ABD30694.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus NCTC
          8325]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAV 63


>gi|88800011|ref|ZP_01115582.1| hypothetical protein MED297_17912 [Reinekea sp. MED297]
 gi|88777289|gb|EAR08493.1| hypothetical protein MED297_17912 [Reinekea sp. MED297]
          Length = 1166

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++K + ++ F+++    ++ F    +  VG NG GK+N ++A+ ++   S  +  R  S
Sbjct: 1  MRLKSIKLAGFKSFVDPTKIPFPTNLSAIVGPNGCGKSNTIDAVRWVMGESSAKHLRGES 60

Query: 61 YADVTRIGSPS 71
            DV   GS S
Sbjct: 61 KTDVIFNGSNS 71


>gi|330723843|gb|AEC46213.1| Protein P115 [Mycoplasma hyorhinis MCLD]
          Length = 979

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 13/123 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAI-SFLS--PGRGFRRAS 60
           +K+  + I  F+++A  + + FD      VG NG GK+NI +AI   L     +  R  +
Sbjct: 2   LKLIKIEIEGFKSFADPISINFDGSVVGIVGPNGSGKSNINDAIRWVLGEQSAKQLRGLN 61

Query: 61  YADVTRIG-------SPSFFSTFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIR 111
             DV   G         +      + E    E     +I    +  +       ND  +R
Sbjct: 62  MDDVIFAGSKTVKPQEKAMVKLTFKNEDAIEETEQIFTISRLLKRGQGTNEYFYNDQPVR 121

Query: 112 VVD 114
             D
Sbjct: 122 YKD 124


>gi|326334760|ref|ZP_08200966.1| DNA repair protein RecN [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325693073|gb|EGD35006.1| DNA repair protein RecN [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 553

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 71/206 (34%), Gaps = 17/206 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  F     +++ F    TI  G+ G GK+ +L+A++ +    +     R     
Sbjct: 2   LQTLAIKNFALIEDIKMNFSKGFTIITGETGSGKSILLDALALVLGKRADLSALRNPEEK 61

Query: 63  DVTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--------- 110
            +            + F + E ++      I+ E       R   IND  +         
Sbjct: 62  CIVEAEFSIGNYALADFFKEEELDYEPLTIIRREILPSGKSRAF-INDSPVTLDVLSTLG 120

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
           + + +++       L     + F   S+     L +   A    +++     + L+  + 
Sbjct: 121 KALIDIHSQHDTQQLSEEDFQFFLIDSLAEDTSLLQEYQAALKIYKKEAKKLQELLDFQQ 180

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVK 196
               E  +++     ++    E G++
Sbjct: 181 NTQKEHDYNTFILEELQEIDLEEGMQ 206


>gi|323492389|ref|ZP_08097539.1| recombination and repair protein [Vibrio brasiliensis LMG 20546]
 gi|323313350|gb|EGA66464.1| recombination and repair protein [Vibrio brasiliensis LMG 20546]
          Length = 554

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 89/260 (34%), Gaps = 46/260 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEAGMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  + L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFSLENNINATRWLEDNDLLDGSDCILRRIISKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG-RNR 171
           +  L + L       +  ++            +  +  +D ++         L++  RN 
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMKS---------EYQMAMLD-QYAGHSA----LLKSTRNA 162

Query: 172 LLTEGYFDSSWCSSIEAQMAELGV------KINIARVEMINALSSLIMEYVQKENFPHIK 225
             +    D++       Q+ E         ++   +++ +N LS    EY Q E   H +
Sbjct: 163 YQSWRQADNNL-----KQLKENSAANQAQKQLLEYQIKELNELSLGEDEYEQLEQ-EHKR 216

Query: 226 LSLTGFLDGKFDQSFCALKE 245
           LS +G L     Q+   + E
Sbjct: 217 LSNSGELASTCQQAIELIYE 236


>gi|311694086|gb|ADP96959.1| protein containing RecF/RecN/SMC protein, N-terminal domain
          [marine bacterium HP15]
          Length = 686

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 5  IKIKFLNISEFRNYASL--RLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  + +S FR++      ++ D   T  +G NG GKT  LEA+  L
Sbjct: 48 MKLHTMRLSNFRSFGQTPTTILLDD-ITYLIGRNGSGKTAALEALCRL 94


>gi|237722508|ref|ZP_04552989.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448318|gb|EEO54109.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 524

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
          + IK ++IS+FR +A+       Q T+  G NG  KT +L     LS     R    
Sbjct: 1  MIIKKVHISKFRGFANAEFEMGDQITVIAGQNGTQKTTLL---GILSQTFSLRGHKT 54


>gi|197105772|ref|YP_002131149.1| DNA repair protein RecN [Phenylobacterium zucineum HLK1]
 gi|196479192|gb|ACG78720.1| DNA repair protein RecN [Phenylobacterium zucineum HLK1]
          Length = 573

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   + I  L I +F    +L L      T   G+ G GK+ IL+A+   +  R     +
Sbjct: 1  MFPAMLI-GLQIRDFVLIEALDLSIGPGLTALTGETGAGKSIILDALGLATGMR-----A 54

Query: 61 YADVTRIGSPSFFSTFA 77
           + + R G+    ST  
Sbjct: 55 DSGLVRRGAAQAVSTAV 71


>gi|38639947|ref|NP_943902.1| gp46 recombination endonuclease subunit [Aeromonas phage Aeh1]
 gi|33414636|gb|AAQ17679.1| gp46 recombination endonuclease subunit [Aeromonas phage Aeh1]
          Length = 772

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 19  ASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFA 77
            ++R+  D  + T+  G NG GK+  +EA++FL  G+ FR  + A +    +        
Sbjct: 19  KAVRVTLDEHKKTLVTGTNGAGKSTFIEALTFLLYGKAFRDVTKAQLVNSQNKKGLHVEG 78

Query: 78  RVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
            +   +    I   ++    +  +    N   ++
Sbjct: 79  ELSVGKDRYHIERGIKPNILKITK----NGEPLK 108


>gi|21739524|emb|CAD38803.1| hypothetical protein [Homo sapiens]
          Length = 1230

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|325127621|gb|EGC50537.1| chromosome segregation protein SMC [Neisseria meningitidis N1568]
          Length = 1161

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIYVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +   R+
Sbjct: 1053 GKKNSTIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCRL 1107

Query: 338  VTDIGSQI 345
            V ++ +Q 
Sbjct: 1108 VKEMSAQT 1115


>gi|324019255|gb|EGB88474.1| DNA sulfur modification protein DndD [Escherichia coli MS 117-3]
          Length = 666

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 31/232 (13%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           +     +R ++ + E+ +      +     D       E ++ +L  +    R + ++ L
Sbjct: 397 WQRFELYRIQLAEIEQQLEQAAANIARAPEDEQLMDIFE-KLRDLDKQRENQRQKYLSLL 455

Query: 209 -------SSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCALKEEYAKKLFDGR----- 255
                     +    Q +       S  GF    K  Q    L + Y+  L   R     
Sbjct: 456 EDAKRVKQQQLDCVRQVQKLHDAARSQHGFSSAFKNAQETINLLDRYSDVLTQARVKTLS 515

Query: 256 -----------KMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                      + + M     I P   D+ ++D     I     S GE+++  + I    
Sbjct: 516 ANFEVAYRKLARKEDMQLSAHINPETFDVELIDEKGSVINRKLLSAGEKQIYAIAI---- 571

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
              ++ T+G    +++D     LD   R+ L          Q+ +  TD  V
Sbjct: 572 LEALAKTSGRDLPVIIDTPLGRLDSQHRDKLINHYFPFASHQVVLLSTDTEV 623



 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 94/301 (31%), Gaps = 42/301 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPG 53
           + IK L +  FR +  +  +    +            +F G NG GKT+IL AI     G
Sbjct: 1   MLIKQLVLHNFRVFNGTHTIDLAPRKRPHEVNPRPIVLFGGLNGAGKTSILSAIRLALYG 60

Query: 54  RGFRRASYAD---------VTRIG-------SPSFFSTFARVEGMEGLADISIKLETRDD 97
           R     +            +   G         +              ++ ++    +  
Sbjct: 61  RLAFGLATQQQDYIEHLSSLIHKGAYYIEQPEEAAVELTFTYNKGGQESEFTVTRTWKKG 120

Query: 98  RSVR-CLQINDVVIRVVDELNKHLRISWLVPSMD-----RIFSGLSMERRRFLDRMVFAI 151
           +  R  LQ +   +  +D    + +    +  +       +F     +     +     I
Sbjct: 121 KKDRLSLQKDGQPLSELD----YDQCQGFLNELIPHGIADLFFFDGEKIAELAEDESGNI 176

Query: 152 DPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
                RR++  + + + RN L+       SS  +  + Q  E+  K +        AL  
Sbjct: 177 LRTAVRRLLGLDLISKLRNDLMIFVKRQQSSQLAETQQQQIEVLEKQSRDLACQTEALLE 236

Query: 211 LIMEYVQKENFPHIK-LSLTGFL---DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
                  +  F     +   G L    G F Q+    K++    L D  +++   R+   
Sbjct: 237 KADFAKSRIEFLSKDIIRYEGLLNAQGGAFAQTKAQEKQKVETLLKDKERLEKALRQECD 296

Query: 267 G 267
           G
Sbjct: 297 G 297


>gi|313680919|ref|YP_004058658.1| smc domain protein [Oceanithermus profundus DSM 14977]
 gi|313153634|gb|ADR37485.1| SMC domain protein [Oceanithermus profundus DSM 14977]
          Length = 584

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +  + I  FR+   + L F+   T+ VG+N  GK+ I  AI   + G+
Sbjct: 2  LTRVIIKNFRSLHDIMLTFETASTVIVGENDSGKSAIFHAI-LAATGK 48


>gi|297184040|gb|ADI20160.1| chromosome segregation ATPases [uncultured alpha proteobacterium
           EB080_L06A09]
          Length = 1151

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 91/278 (32%), Gaps = 31/278 (11%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
           ++   L ++ F+++     L+     T  VG NG GK+N+LEA+ ++      +  R   
Sbjct: 1   MQFSKLRLTGFKSFVDPTELIIADGLTGVVGPNGCGKSNLLEALRWVMGENRPKAMRGGG 60

Query: 61  YADVTRIGSPS-----FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             DV   G+ S     +      ++  + LA  +   +   +   R  +      +   +
Sbjct: 61  MEDVIFAGASSRPARNYAEVSLLIDNTQRLAPAAFNTQDVLEIIRRITRDVGSAYKTNGK 120

Query: 116 LNKHLRISWL---------VPSMDR------IFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            ++   +  L          P++ R      + +     RRR L+     I   ++    
Sbjct: 121 DSRAKDVQMLFADASTGAHSPALVRQGQISELINAKPKARRRVLE-EAAGISGLYQ---R 176

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG--VKINIARVEMINALSSLIMEYVQK 218
             E  ++ R         +      + +Q+  L    +      E+ N L       + +
Sbjct: 177 RHEAELKLRGSETNLSRVNDV-VEQLNSQLGSLARQARQAKRYREIGNELRQSEGLLLYR 235

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
                         +      F A  +  A +L   R+
Sbjct: 236 RWREADIARQKASEELAEATKFAANAQTEALQLLKNRQ 273



 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  T++  S GEQ +  + +  A           API +LDE+ A LD+   N    +
Sbjct: 1043 GKKLSTLSLLSGGEQTLTALALIFAVFLA-----NPAPICVLDEVDAPLDDANVNRFCDM 1097

Query: 338  VTDIGSQI 345
            + D+ SQ 
Sbjct: 1098 LDDMTSQT 1105


>gi|217076135|ref|YP_002333851.1| DNA double-strand break repair protein Rad50, putative
          [Thermosipho africanus TCF52B]
 gi|217035988|gb|ACJ74510.1| DNA double-strand break repair protein Rad50, putative
          [Thermosipho africanus TCF52B]
          Length = 643

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 6/56 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT------IFVGDNGVGKTNILEAISFLSPGR 54
          ++I+ + +S+F+ +   ++ F   +       + V   GVGK+N+LE+I++   G+
Sbjct: 1  MRIESIKLSKFKQFKDFKIEFSKDNNQDNDFHVIVAKMGVGKSNLLESINWCLYGK 56


>gi|148242264|ref|YP_001227421.1| putative ATPase involved in DNA repair [Synechococcus sp. RCC307]
 gi|147850574|emb|CAK28068.1| Putative ATPase involved in DNA repair [Synechococcus sp. RCC307]
          Length = 853

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +++  + +   R +  L L   +  T+  G N  GK+ + EAI 
Sbjct: 1  MQLLQITLEHVRLHRQLNLPLASGITVLEGANESGKSTLAEAIH 44


>gi|160880631|ref|YP_001559599.1| DNA repair protein RecN [Clostridium phytofermentans ISDg]
 gi|160429297|gb|ABX42860.1| DNA repair protein RecN [Clostridium phytofermentans ISDg]
          Length = 561

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 17/116 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  F     + + F     I  G+ G GK+ ++++I+    G+        D+ R
Sbjct: 2   LLSLHVKNFAIIDEVEVYFKDHLNILTGETGAGKSILIDSINVALGGK-----VTKDIIR 56

Query: 67  IGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCL-QINDVVI 110
                       V           E      D  I +  +   + R + ++N   +
Sbjct: 57  KNCEYALVELVFVTNRPEVLKLLEENDLPTEDGQILISRKIMTNGRSICKLNGENV 112


>gi|27881854|gb|AAH44377.1| Smc4 protein [Danio rerio]
 gi|33417184|gb|AAH55496.1| Smc4 protein [Danio rerio]
          Length = 482

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 78  APRLMITHIVNRNFKSYAGEQILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 137

Query: 58  RASYADVTRI--GSPSFFSTFARVE 80
               + +     G P   S    V 
Sbjct: 138 SKKLSVLIHSSDGHPDIQSCTVEVH 162


>gi|146329776|ref|YP_001209519.1| chromosome segregation SMC family protein [Dichelobacter nodosus
          VCS1703A]
 gi|146233246|gb|ABQ14224.1| chromosome segregation SMC family protein [Dichelobacter nodosus
          VCS1703A]
          Length = 1127

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +K+  + +  F+++A   L   DA  T  +G NG GK+NI++A+ ++   S  +  R   
Sbjct: 1  MKLTAIELIGFKSFADRALFPVDAPITGIIGPNGCGKSNIVDAVRWVLGESAAKQLRGQM 60

Query: 61 YADVT 65
            DV 
Sbjct: 61 LTDVI 65


>gi|167647061|ref|YP_001684724.1| DNA repair protein RecN [Caulobacter sp. K31]
 gi|167349491|gb|ABZ72226.1| DNA repair protein RecN [Caulobacter sp. K31]
          Length = 564

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 80/289 (27%), Gaps = 43/289 (14%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L+I +     SL L      T   G+ G GK+ IL+A+   +  R     + A + R G+
Sbjct: 5   LSIRDVVLIESLDLAIGPGLTALTGETGAGKSIILDALGLATGAR-----ADAGLVRRGA 59

Query: 70  PSFFSTFARV--------------EGMEGLADISIKLETRDDRSVR-CLQINDVVIRV-- 112
               S  A                +G++   D  + L  +     R    +ND    +  
Sbjct: 60  AGHASATAIFALPADHAAFAYLDDKGLDYARDEDLVLRRQLSPDGRSRAFVNDQATSIGV 119

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + +L   L           +    +   R  LD                + R  R +   
Sbjct: 120 LKDLGALLLEVHGQHETVGLL--DARTHRALLDAFGLVSVGTVGSAWSAW-RAAREKAAA 176

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL-------IMEYVQKENFPHIK 225
           L +   D +   + E  +          R+  ++ L            E     +     
Sbjct: 177 LRDL-ADRAAVETEELTL----------RLSELDRLDPREGEETALAEERALLGSAEKAL 225

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
             +    D     +         + L   R     +     GP  + L 
Sbjct: 226 ADIAAASDALGGDALSGKLASAFRALERARDRAIQAGAPADGPAVTKLA 274


>gi|294784963|ref|ZP_06750251.1| DNA repair protein RecN [Fusobacterium sp. 3_1_27]
 gi|294486677|gb|EFG34039.1| DNA repair protein RecN [Fusobacterium sp. 3_1_27]
          Length = 558

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 16/125 (12%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ ++ L I        L + FD    +  G+ G GK+ IL  I+ L   +     +
Sbjct: 1   MGRKLMLRELKIGNLAIIDELDIEFDKGFIVLTGETGAGKSIILSGINLLIGEK-----A 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADI----------SIKLETRDDRSVR-CLQINDVV 109
             D+ R G  +  +        E    +           I +     RS +    +N+V 
Sbjct: 56  SVDMIRDGEENLVAQGVFDVDEEQKKKLEAMGVDIDGDEIIIRRSYSRSGKARAFVNNVR 115

Query: 110 IRVVD 114
           I + D
Sbjct: 116 ITLAD 120


>gi|253581690|ref|ZP_04858914.1| DNA repair protein RecN [Fusobacterium varium ATCC 27725]
 gi|251836039|gb|EES64576.1| DNA repair protein RecN [Fusobacterium varium ATCC 27725]
          Length = 554

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 82/261 (31%), Gaps = 38/261 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L F     +  G+ G GK+ IL  I+ L   +     +  D+ R
Sbjct: 2   LRELKIENLAIIDELDLEFGNGLIVLTGETGAGKSIILSGINLLIGEK-----ASVDMIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G     +        E   ++S +     + +   ++              ++R+S   
Sbjct: 57  SGEDHLLAQGVFEINDEQAEELSARFGIETEDNEVIVRRYLDTNGKGKAFVNNIRVSL-- 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
            S  +   G        L  +V     +      +  RL+                   +
Sbjct: 115 -SSLKDVMGT-------LVDIVGQHSHQMLLNKNNHIRLL----------------DKFL 150

Query: 187 EAQMAELGVKINIARVE------MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
             +   L   I     E       I+ +     E ++K  F   +L+    ++ + ++  
Sbjct: 151 GEEGKALRENIGRKYNEHRDIVLQIDNIEKTRQEAIEKREFYEFQLAEIDRVNPQPEEDI 210

Query: 241 CALKEEYAKKLFDGRKMDSMS 261
             L+EEY K    G+  D + 
Sbjct: 211 -RLEEEYKKLFNAGKIKDKIL 230


>gi|124514553|gb|EAY56066.1| conserved protein of unknown function [Leptospirillum rubarum]
          Length = 716

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 20/44 (45%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +K     I  FRN      +   + T FVG N  GKT +L+A  
Sbjct: 1  MKAVRFRIQNFRNIDDSGWIPIERVTNFVGRNESGKTTLLKAFH 44


>gi|15924509|ref|NP_372043.1| DNA repair protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927100|ref|NP_374633.1| DNA repair protein [Staphylococcus aureus subsp. aureus N315]
 gi|148268004|ref|YP_001246947.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus JH9]
 gi|150394071|ref|YP_001316746.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus JH1]
 gi|156979838|ref|YP_001442097.1| DNA repair protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|253314889|ref|ZP_04838102.1| DNA repair protein [Staphylococcus aureus subsp. aureus str.
          CF-Marseille]
 gi|255006306|ref|ZP_05144907.2| DNA repair protein [Staphylococcus aureus subsp. aureus
          Mu50-omega]
 gi|257793596|ref|ZP_05642575.1| DNA repair protein RecN [Staphylococcus aureus A9781]
 gi|258411104|ref|ZP_05681384.1| DNA repair protein RecN [Staphylococcus aureus A9763]
 gi|258420092|ref|ZP_05683047.1| DNA repair protein RecN [Staphylococcus aureus A9719]
 gi|258437352|ref|ZP_05689336.1| DNA repair protein RecN [Staphylococcus aureus A9299]
 gi|258443558|ref|ZP_05691897.1| DNA repair protein RecN [Staphylococcus aureus A8115]
 gi|258446765|ref|ZP_05694919.1| DNA repair protein RecN [Staphylococcus aureus A6300]
 gi|258448679|ref|ZP_05696791.1| DNA repair protein RecN [Staphylococcus aureus A6224]
 gi|258453496|ref|ZP_05701474.1| DNA repair protein RecN [Staphylococcus aureus A5937]
 gi|269203149|ref|YP_003282418.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          ED98]
 gi|282893021|ref|ZP_06301255.1| DNA repair protein RecN [Staphylococcus aureus A8117]
 gi|282916790|ref|ZP_06324548.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          D139]
 gi|282928991|ref|ZP_06336578.1| DNA repair protein RecN [Staphylococcus aureus A10102]
 gi|283770596|ref|ZP_06343488.1| DNA repair protein RecN (Recombination protein N) [Staphylococcus
          aureus subsp. aureus H19]
 gi|295406642|ref|ZP_06816447.1| DNA repair protein RecN [Staphylococcus aureus A8819]
 gi|296275124|ref|ZP_06857631.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus MR1]
 gi|297245775|ref|ZP_06929640.1| DNA repair protein RecN [Staphylococcus aureus A8796]
 gi|13701318|dbj|BAB42612.1| DNA repair protein [Staphylococcus aureus subsp. aureus N315]
 gi|14247290|dbj|BAB57681.1| DNA repair protein [Staphylococcus aureus subsp. aureus Mu50]
 gi|147741073|gb|ABQ49371.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus JH9]
 gi|149946523|gb|ABR52459.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus JH1]
 gi|156721973|dbj|BAF78390.1| DNA repair protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257787568|gb|EEV25908.1| DNA repair protein RecN [Staphylococcus aureus A9781]
 gi|257840254|gb|EEV64718.1| DNA repair protein RecN [Staphylococcus aureus A9763]
 gi|257843803|gb|EEV68197.1| DNA repair protein RecN [Staphylococcus aureus A9719]
 gi|257848557|gb|EEV72545.1| DNA repair protein RecN [Staphylococcus aureus A9299]
 gi|257850964|gb|EEV74907.1| DNA repair protein RecN [Staphylococcus aureus A8115]
 gi|257854340|gb|EEV77289.1| DNA repair protein RecN [Staphylococcus aureus A6300]
 gi|257857957|gb|EEV80846.1| DNA repair protein RecN [Staphylococcus aureus A6224]
 gi|257864227|gb|EEV86977.1| DNA repair protein RecN [Staphylococcus aureus A5937]
 gi|262075439|gb|ACY11412.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          ED98]
 gi|282319277|gb|EFB49629.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          D139]
 gi|282589398|gb|EFB94489.1| DNA repair protein RecN [Staphylococcus aureus A10102]
 gi|282764339|gb|EFC04465.1| DNA repair protein RecN [Staphylococcus aureus A8117]
 gi|283460743|gb|EFC07833.1| DNA repair protein RecN (Recombination protein N) [Staphylococcus
          aureus subsp. aureus H19]
 gi|283470798|emb|CAQ50009.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          ST398]
 gi|285817202|gb|ADC37689.1| DNA repair protein RecN [Staphylococcus aureus 04-02981]
 gi|294968389|gb|EFG44413.1| DNA repair protein RecN [Staphylococcus aureus A8819]
 gi|297177426|gb|EFH36678.1| DNA repair protein RecN [Staphylococcus aureus A8796]
 gi|298694802|gb|ADI98024.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          ED133]
 gi|312829909|emb|CBX34751.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          ECT-R 2]
 gi|315129797|gb|EFT85787.1| DNA repair protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|323440417|gb|EGA98129.1| DNA repair protein [Staphylococcus aureus O11]
 gi|323443191|gb|EGB00809.1| DNA repair protein [Staphylococcus aureus O46]
 gi|329727183|gb|EGG63639.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          21172]
 gi|329730844|gb|EGG67222.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          21193]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAV 63


>gi|301607379|ref|XP_002933283.1| PREDICTED: structural maintenance of chromosomes protein 4 [Xenopus
           (Silurana) tropicalis]
          Length = 1286

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  R+   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 69  APRLMITHIVNQNFKSYAGERILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 128

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 129 SKKLSVLIHNSDEHKDVQSCTVEVHFQKI 157


>gi|294498712|ref|YP_003562412.1| hypothetical protein BMQ_1949 [Bacillus megaterium QM B1551]
 gi|294348649|gb|ADE68978.1| hypothetical protein BMQ_1949 [Bacillus megaterium QM B1551]
          Length = 621

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 36/108 (33%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ----------------------------------HT 30
           +++ +L + EFRN   +   F  +                                   T
Sbjct: 1   MELVYLWVEEFRNIKQVGFSFSPKFKVEFKFNEKLGYKQIYIEEFQKQRKLFDDKISNVT 60

Query: 31  IFVGDNGVGKTNILEAISF-LSPGRGFRRASYADVTRIGSPSFFSTFA 77
             +G NG GKTNIL+ +   ++  + FR A Y  +      + FS   
Sbjct: 61  TIIGKNGSGKTNILDLLGLRMNERKQFRDAKYF-IIYHHEDNLFSIEG 107


>gi|254412897|ref|ZP_05026669.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
          chthonoplastes PCC 7420]
 gi|196180061|gb|EDX75053.1| RecF/RecN/SMC N terminal domain, putative [Microcoleus
          chthonoplastes PCC 7420]
          Length = 396

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 1  MTNRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          M  +  I+ + +    +Y      +       + +G N  GK+N++EAI  L
Sbjct: 1  MEGKQFIRTMRLQNLLSYGSEGEEIELQP-LNVLIGANASGKSNLIEAIGLL 51


>gi|70726397|ref|YP_253311.1| DNA repair protein [Staphylococcus haemolyticus JCSC1435]
 gi|68447121|dbj|BAE04705.1| DNA repair protein [Staphylococcus haemolyticus JCSC1435]
          Length = 561

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 10/92 (10%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIDELEIHFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--YVR 56

Query: 67 IGS-----PSFFSTFARVEGMEGLADISIKLE 93
           G         F      + +  L ++ I+++
Sbjct: 57 HGEKKAIIEGIFDIDESKDVIHILHNLDIEID 88


>gi|134295915|ref|YP_001119650.1| ATPase-like protein [Burkholderia vietnamiensis G4]
 gi|134139072|gb|ABO54815.1| ATPase-like protein [Burkholderia vietnamiensis G4]
          Length = 391

 Score = 45.7 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +K L I+ +R+   L +   A  T+  G NG GK+++  A+  L+
Sbjct: 3  ALKTLAIANYRSLRELIVPLAA-LTVVTGPNGSGKSSVYRALRLLA 47


>gi|323464394|gb|ADX76547.1| DNA repair protein RecN [Staphylococcus pseudintermedius ED99]
          Length = 560

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 92/274 (33%), Gaps = 39/274 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +L + F    T+  G+ G GK+ I++AI  L    G R +S  +  R
Sbjct: 2   LQSLSIKQFAIIDTLDIQFSDGLTVLSGETGAGKSIIIDAIGQLI---GMRASS--EFVR 56

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLETR--------DDRSVRCLQINDVVIRVV 113
            G         F      + +  L  + I +                   +IN+  + + 
Sbjct: 57  HGEKKAIIEGIFDIDDAKDAIRQLETLGIDINEDFLIVKREIFSSGKSICRINNQTVTLQ 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL 173
           D L + ++    +       +   ++++  ++ +    D  +   +  + +        +
Sbjct: 117 D-LRQVMQSLLDIHGQHE--TQSLLKQKYHVELLDRYADGEYIEELQQYAQSYEQHQEKI 173

Query: 174 TE----GYFDSSWCSSIE-----------AQMAE---LGVKINIARVEMINALSSLIMEY 215
            E       D +    ++           AQ+ E     ++I+I R++    LS  +   
Sbjct: 174 KELEALESADQALLQRLDLMKFQYDELKEAQLKEGEIEQLEIDIKRIQNSENLSLALNAA 233

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
                  H        L  +       L E + K
Sbjct: 234 YVTLTDEHAITDRLYTLSSELQNVNQILPETFEK 267


>gi|213582900|ref|ZP_03364726.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 488

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              P+        +  EG   +  ++ + D RS   +    V +  
Sbjct: 57  TGATRADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDPRHRRRMIDFERLMR 167
           + EL + L       +  ++      +++  LD       +      H +      R + 
Sbjct: 117 LRELGQLLIQIHGQHTHQQLTK--PEQQKSLLDSYANEAALAQQMAAHYQLWHQSCRDLA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
              +   E    +        Q+ EL
Sbjct: 175 HHQQQSQERAARAELLQY---QLKEL 197


>gi|313890806|ref|ZP_07824431.1| DNA repair protein RecN [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120907|gb|EFR44021.1| DNA repair protein RecN [Streptococcus pseudoporcinus SPIN 20026]
          Length = 553

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 13/93 (13%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  ++I  F     + L FD   T+  G+ G GK+ I++A++ +   R     +  DV R
Sbjct: 2  LLEISIKNFAIIEEISLSFDNGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASIDVIR 56

Query: 67 IGSPSFFSTFARVEG---MEGLADISIKLETRD 96
           G+       A +EG   ++  A++   LE   
Sbjct: 57 HGAQK-----AEIEGFFSIDHKAELMTLLEANG 84


>gi|257452785|ref|ZP_05618084.1| DNA repair protein recN [Fusobacterium sp. 3_1_5R]
 gi|257466847|ref|ZP_05631158.1| DNA repair protein recN [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917995|ref|ZP_07914235.1| DNA repair protein recN [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059326|ref|ZP_07923811.1| DNA repair protein recN [Fusobacterium sp. 3_1_5R]
 gi|313685002|gb|EFS21837.1| DNA repair protein recN [Fusobacterium sp. 3_1_5R]
 gi|313691870|gb|EFS28705.1| DNA repair protein recN [Fusobacterium gonidiaformans ATCC 25563]
          Length = 555

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 94/265 (35%), Gaps = 40/265 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L F     +  G+ G GK+ IL  I+ L   +     +  D+ R
Sbjct: 2   LRELKIENLAIIEELDLEFQEGFVVLTGETGAGKSIILSGINLLIGEK-----ASVDMIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  S  +        +G+ DI+ K E    +    ++  +VV+R   + N   +I    
Sbjct: 57  DGENSLLA--------QGVFDITKKQEQDLQKFGISIEDGEVVVRRQLDRNGKSKIYVNS 108

Query: 127 PSMDRIFSGLSMERRRFLDRM--VFAIDPRHRRRMIDFERL----MRGRNRLLTEGYFDS 180
                I   ++  R      +  V     +      + ++L    +  + +++ +     
Sbjct: 109 -----IRVNVTELREIMSSLVDIVGQHSHQMLLNKNNHQKLLDHFLEEKGQIVKKEVESL 163

Query: 181 S-WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
           +     ++ ++ E    I   R E +        E+ + +     KL L    D K ++ 
Sbjct: 164 AKEYDILDRRIKE----IEKNRQEALEK-----KEFYEYQLQEIEKLQLKEGEDEKLEEE 214

Query: 240 F------CALKEEYAKKLFDGRKMD 258
           +        +KE+    L+  R  +
Sbjct: 215 YKKIFHAGKIKEKLYNTLYALRDGE 239


>gi|228472099|ref|ZP_04056865.1| DNA repair protein RecN [Capnocytophaga gingivalis ATCC 33624]
 gi|228276302|gb|EEK15026.1| DNA repair protein RecN [Capnocytophaga gingivalis ATCC 33624]
          Length = 552

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 17/143 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  F     +++ F    TI  G+ G GK+ +L+A++ +    +     R     
Sbjct: 2   LQSLAIKNFALIEDIKIHFSKGFTIITGETGSGKSILLDALALVLGRRADLSALRNPEEK 61

Query: 63  DVTRIG---SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--------- 110
            V       +    + F + E ++      I+ E       R   +ND  +         
Sbjct: 62  CVVEAEFAIASYGLADFFQQEELDYEPLTIIRREILSSGKSRAF-VNDSPVTLDVLSSLG 120

Query: 111 RVVDELNKHLRISWLVPSMDRIF 133
           + + +++       L     + F
Sbjct: 121 KTLIDIHSQHDTQQLSEEDFQFF 143


>gi|219871508|ref|YP_002475883.1| DNA repair protein RecN [Haemophilus parasuis SH0165]
 gi|219691712|gb|ACL32935.1| DNA repair protein RecN [Haemophilus parasuis SH0165]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 81/277 (29%), Gaps = 39/277 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F     L L  +   ++  G+ G GK+  ++A+      R       + + R
Sbjct: 2   LTQLTINNFAIVRHLTLELNEGMSVITGETGAGKSIGIDALGLCLGYRS-----ESSMIR 56

Query: 67  IGSP----------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VV 109
            G+                   +     +   +   +  ++     +   +    N  + 
Sbjct: 57  NGADKADISATFSMQPTSPAYLWLKEHELLDEDNPQECILRRMINQEGRSKAFVNNHPIP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF---ERLM 166
           +  + EL ++L       +   +      E +  +      + P        +    +L 
Sbjct: 117 VSQLRELGQYLIHLNGQHAPQLLLK---SEYQLEVVDNYANLHPLLAEMATQYHSWRKLH 173

Query: 167 RG-RN--RLLTEGYFDSSWCSSIEAQMAELGV--------KINIARVEMINALSSLIMEY 215
           +  +N  +   E             ++ E  +        + + AR+     L+ L    
Sbjct: 174 KQVKNFHQQCQENEARKQLLQYQVEELDEFAIKEGEFEQLEEDHARLANSEQLTELSQSV 233

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
           +   +  +  +    +   +  +    +  +Y   L 
Sbjct: 234 LNLLSDDNANVDTMLYRAIRDLEELVEVDSQYQSALE 270


>gi|167759763|ref|ZP_02431890.1| hypothetical protein CLOSCI_02124 [Clostridium scindens ATCC
          35704]
 gi|167662630|gb|EDS06760.1| hypothetical protein CLOSCI_02124 [Clostridium scindens ATCC
          35704]
          Length = 461

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHT-----IFVGDNGVGKTNILEAISFLSPGRG 55
          M   +++  L I   +N     L F             G NG GKT +++ +  L     
Sbjct: 1  MQQIVRLTRLTIDNIKNVQHGELEFAQGDNKGGVLGIYGQNGSGKTVVIDCMVLLKCLFS 60


>gi|82751124|ref|YP_416865.1| DNA repair protein [Staphylococcus aureus RF122]
 gi|82656655|emb|CAI81081.1| DNA repair protein [Staphylococcus aureus RF122]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAV 63


>gi|21283201|ref|NP_646289.1| DNA repair protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49486356|ref|YP_043577.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57650476|ref|YP_186405.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus COL]
 gi|87160403|ref|YP_494164.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|151221637|ref|YP_001332459.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|161509748|ref|YP_001575407.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|221140060|ref|ZP_03564553.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus str.
          JKD6009]
 gi|253732173|ref|ZP_04866338.1| DNA repair protein [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253733231|ref|ZP_04867396.1| DNA repair protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|258451177|ref|ZP_05699212.1| DNA repair protein RecN [Staphylococcus aureus A5948]
 gi|262049105|ref|ZP_06021982.1| DNA repair protein [Staphylococcus aureus D30]
 gi|262051186|ref|ZP_06023410.1| DNA repair protein [Staphylococcus aureus 930918-3]
 gi|282924768|ref|ZP_06332435.1| DNA repair protein RecN [Staphylococcus aureus A9765]
 gi|284024579|ref|ZP_06378977.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus 132]
 gi|294848550|ref|ZP_06789296.1| DNA repair protein RecN [Staphylococcus aureus A9754]
 gi|297207761|ref|ZP_06924196.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|300911842|ref|ZP_07129285.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|304380892|ref|ZP_07363552.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|21204641|dbj|BAB95337.1| DNA repair protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49244799|emb|CAG43245.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
          MSSA476]
 gi|57284662|gb|AAW36756.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus COL]
 gi|87126377|gb|ABD20891.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          USA300_FPR3757]
 gi|150374437|dbj|BAF67697.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus str.
          Newman]
 gi|160368557|gb|ABX29528.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          USA300_TCH1516]
 gi|253724128|gb|EES92857.1| DNA repair protein [Staphylococcus aureus subsp. aureus
          USA300_TCH959]
 gi|253728771|gb|EES97500.1| DNA repair protein [Staphylococcus aureus subsp. aureus TCH130]
 gi|257861232|gb|EEV84045.1| DNA repair protein RecN [Staphylococcus aureus A5948]
 gi|259160823|gb|EEW45843.1| DNA repair protein [Staphylococcus aureus 930918-3]
 gi|259162774|gb|EEW47339.1| DNA repair protein [Staphylococcus aureus D30]
 gi|269941010|emb|CBI49394.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
          TW20]
 gi|282592775|gb|EFB97781.1| DNA repair protein RecN [Staphylococcus aureus A9765]
 gi|294824576|gb|EFG40999.1| DNA repair protein RecN [Staphylococcus aureus A9754]
 gi|296887778|gb|EFH26676.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus ATCC
          51811]
 gi|300886088|gb|EFK81290.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          TCH70]
 gi|302751351|gb|ADL65528.1| putative DNA repair protein [Staphylococcus aureus subsp. aureus
          str. JKD6008]
 gi|304340619|gb|EFM06553.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus ATCC
          BAA-39]
 gi|315198786|gb|EFU29114.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          CGS01]
 gi|320140595|gb|EFW32449.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          MRSA131]
 gi|320144132|gb|EFW35901.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          MRSA177]
 gi|329314197|gb|AEB88610.1| DNA repair protein RecN [Staphylococcus aureus subsp. aureus
          T0131]
          Length = 559

 Score = 45.7 bits (107), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAV 63


>gi|330995704|ref|ZP_08319602.1| DNA repair protein RecN [Paraprevotella xylaniphila YIT 11841]
 gi|329574763|gb|EGG56324.1| DNA repair protein RecN [Paraprevotella xylaniphila YIT 11841]
          Length = 557

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  +    +L + F+   ++  G+ G GK+ IL AI  L    +  +  +     
Sbjct: 2   LKSLFIQNYALIDTLDIRFEPGFSVITGETGAGKSIILGAIGLLLGQRADSKSIKNGMSK 61

Query: 63  DVTR-------IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVV 113
            +          G   FF    R +      +  ++ E       R   IND    +  +
Sbjct: 62  CIIEAVFDLSAYGMQGFFE---RNDLEFDGKECIVRREITASGKSRAF-INDTPAPVSQL 117

Query: 114 DELNKHL 120
            EL + L
Sbjct: 118 KELGEML 124


>gi|322420367|ref|YP_004199590.1| hypothetical protein GM18_2870 [Geobacter sp. M18]
 gi|320126754|gb|ADW14314.1| hypothetical protein GM18_2870 [Geobacter sp. M18]
          Length = 656

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRG 55
          +K+  + +  +R+       FD    T  VG N  GKT +L A+  L P + 
Sbjct: 1  MKLIKVRVQNYRSVEDSE-EFDIGNLTCLVGKNEAGKTALLSALRALRPSKS 51


>gi|159477601|ref|XP_001696897.1| structural maintenance of chromosomes protein 6A [Chlamydomonas
           reinhardtii]
 gi|158274809|gb|EDP00589.1| structural maintenance of chromosomes protein 6A [Chlamydomonas
           reinhardtii]
          Length = 1207

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGR-GFRRASYA 62
            +  + +  F  +++  L      T+  G NG GK+ +++A+     +  R   R  S+A
Sbjct: 107 HVDRIRVENFMCHSNFELQLGPHVTLVSGTNGSGKSAVIQAMQVCLGATARETSRARSFA 166

Query: 63  DVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
              + G   +         G +             +RS++        ++++DE  K + 
Sbjct: 167 AFVKEGCHEARVYVTLWNVGEDAFLPDLFGERITIERSIKAA--GGTDVKLLDERGKRVT 224

Query: 122 I 122
           +
Sbjct: 225 V 225


>gi|147902597|ref|NP_001082472.1| structural maintenance of chromosomes protein 5 [Xenopus laevis]
 gi|82132868|sp|Q805A1|SMC5_XENLA RecName: Full=Structural maintenance of chromosomes protein 5;
           Short=SMC protein 5; Short=SMC-5
 gi|28316402|dbj|BAC56936.1| structural maintenance of chromosomes protein 5 [Xenopus laevis]
          Length = 1065

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 35/102 (34%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y    +       + VG NG GK++I+ AI     G+         V  
Sbjct: 31  IVRIKMENFLTYDQCEVFPGPYLNMIVGANGTGKSSIVCAICLGLAGKTAFIGRADKVGF 90

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                    F  +E  +   ++ IK E +   +     IN  
Sbjct: 91  YVKRGCQKGFVELELYKTSGNVIIKREIQVANNQSVWYINHK 132


>gi|108803297|ref|YP_643234.1| SMC protein-like protein [Rubrobacter xylanophilus DSM 9941]
 gi|108764540|gb|ABG03422.1| SMC protein-like protein [Rubrobacter xylanophilus DSM 9941]
          Length = 955

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 53/146 (36%), Gaps = 20/146 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + +K L +  ++ +   L L+        VG NG GKT + EAI +   G    R + A 
Sbjct: 1   MILKRLYLENYKQFRDPLELLPPEGAIGVVGANGAGKTTLFEAILWAFFGS---RGTDA- 56

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             R  + S   +           ++++++     R  R L+      RV  E        
Sbjct: 57  --RFANDSIPWSGGSASDR-SAVEVTLEVGGTSYRVERSLRRGRTEARVCRE-------- 105

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVF 149
                 + +  G S  +R   + ++ 
Sbjct: 106 ----PDEELVGGPSEVKRWVQEHLLG 127


>gi|325114640|emb|CBZ50196.1| smc2 protein, related [Neospora caninum Liverpool]
          Length = 826

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
          + I+ + +  F++Y++         Q     G NG GK+NIL++I F+         R  
Sbjct: 1  MYIEAIVLEGFKSYSNRVYVGPLHPQFNAVTGLNGTGKSNILDSICFVLGITNHALVRAT 60

Query: 60 SYADVT 65
             D+ 
Sbjct: 61 KLDDLV 66


>gi|326783818|ref|YP_004324212.1| recombination endonuclease subunit [Synechococcus phage S-SSM7]
 gi|310003830|gb|ADO98225.1| recombination endonuclease subunit [Synechococcus phage S-SSM7]
          Length = 574

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 21/138 (15%)

Query: 28  QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR--IGSPSFFSTFARVEG---- 81
              + VG NG GK+ IL+A++F+   + FR+   A +                ++G    
Sbjct: 28  PTNLIVGQNGAGKSTILDALTFVLYNKPFRKIKKAQLVNTVNDKECEVQIEFEIQGKIYT 87

Query: 82  -MEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW----------LVPSMD 130
            + G+     ++     +  +    ND    + D + +    S+           VP M 
Sbjct: 88  IVRGMKPTLFEIYIDGKKQDQFASSNDQQQHLEDNILRLNYKSFTQTTILGAATFVPFMQ 147

Query: 131 RIFSGLSMERRRFLDRMV 148
                    RR  ++ ++
Sbjct: 148 L----SQTHRREIVEDVL 161


>gi|288926140|ref|ZP_06420067.1| conserved hypothetical protein [Prevotella buccae D17]
 gi|288337032|gb|EFC75391.1| conserved hypothetical protein [Prevotella buccae D17]
          Length = 425

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 55/384 (14%), Positives = 118/384 (30%), Gaps = 48/384 (12%)

Query: 5   IKI-KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGK-------------TNILEAISFL 50
           + I   + + +FR      ++ +   T+  G NG GK             TN LE I   
Sbjct: 1   MTINTEMQVKDFRAIHHADILLN-GITVIAGINGSGKSTLSKLLYSAFENTNRLEDIYIA 59

Query: 51  SPGRGFRRASYADVTRIGSPSF-----FSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
              +     +  ++ +    +F       TF R    +G  D + +L  +   ++R    
Sbjct: 60  IYQKSL--TNITEIYQQIKMAFPKLEPLRTFIRNLYEKGKRDKARELLVKALDTLRSAIT 117

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
           +D        L   +  +  V           +      D     ++           R 
Sbjct: 118 HDTDNEKARRLRNIIEYNLNVHGSLDEVLQSVLTT---FDSAEELLEKNMA------NRP 168

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
           ++  +  + +G+ ++S    +   ++E GV     +V  +  L  +              
Sbjct: 169 IKELDAAMADGFDENSLLEYVS--LSEYGVPFFDKKVSKVPILHYIKNTTYIDSPLAINF 226

Query: 226 LSLTGFLDGKFDQSFCALK-----EEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
                  D     S          ++Y K ++     D +    L+     ++     D 
Sbjct: 227 SERPYRHDDWKRDSLDEKLRMDGIKDYNKDIYSYISRDIIKGEALLSEDMEEIYYTREDG 286

Query: 281 AI-TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
               +   +TG  K       +    L +       ++++DE  AHL         +IV 
Sbjct: 287 QAFALQDCATG-VKSFA----MLQMLLRNGHINDRSLIIIDEPEAHLHPQWIVEYAKIVV 341

Query: 340 DIGSQI----FMTGTDKSVFDSLN 359
           ++  Q+    F+      +  +L 
Sbjct: 342 ELNKQVGAKFFIATHSTDMVSALR 365


>gi|237739555|ref|ZP_04570036.1| ATPase [Fusobacterium sp. 2_1_31]
 gi|229423163|gb|EEO38210.1| ATPase [Fusobacterium sp. 2_1_31]
          Length = 330

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ-----HTIFVGDNGVGKTNILEAI 47
          +KI+ ++I   +    L L F          +  G NG GKT ILE+I
Sbjct: 1  MKIEKVHIKNIKGIKDLELSFRKDNKILDVIVLAGVNGSGKTTILESI 48


>gi|218261829|ref|ZP_03476536.1| hypothetical protein PRABACTJOHN_02207 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223748|gb|EEC96398.1| hypothetical protein PRABACTJOHN_02207 [Parabacteroides johnsonii
           DSM 18315]
          Length = 421

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 73/201 (36%), Gaps = 19/201 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  F    SL + FD   ++  G+ G GK+ IL A+S +    + G+  +  S  
Sbjct: 2   LKSLFIRNFVLIDSLDIKFDKGFSVITGETGAGKSIILGALSLVLGQRADGKSIKNGSEK 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADIS-------IKLETRDDRSVRCLQIND-VVIRVVD 114
            V       F  +  ++E      D+        ++ E       R    +  V + VV 
Sbjct: 62  CVI---EAVFDVSRYKLEEFFLTNDLEYDAEVCILRRELFASGKSRAFVNDSPVPLSVVK 118

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRNRL 172
           EL    R+  +      +  G +  + + +D M     +   +R+    +  L +    L
Sbjct: 119 ELGS--RLIDIHSQHQNLLLGDNRFQLKVIDVMAENDILLILYRKEYSRYLFLKKELKEL 176

Query: 173 LTEGYFDSSWCSSIEAQMAEL 193
             +          +  Q+ +L
Sbjct: 177 TEKALQTKQEEDYVRFQLEQL 197


>gi|114590136|ref|XP_001157803.1| PREDICTED: structural maintenance of chromosomes protein 4 isoform
           9 [Pan troglodytes]
          Length = 1263

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 54  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 113

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 114 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 142


>gi|109048435|ref|XP_001098705.1| PREDICTED: structural maintenance of chromosomes protein 4-like
           isoform 7 [Macaca mulatta]
          Length = 1262

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 53  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 112

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 113 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 141


>gi|86131758|ref|ZP_01050355.1| DNA repair protein RecN [Dokdonia donghaensis MED134]
 gi|85817580|gb|EAQ38754.1| DNA repair protein RecN [Dokdonia donghaensis MED134]
          Length = 550

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 23/125 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  +    S++L FD   T+  G+ G GK+ +L A+  +           AD++ 
Sbjct: 2   LTSLSIKNYALIQSVQLQFDKGFTVITGETGAGKSILLGALGLI-------TGKRADMSS 54

Query: 67  IG--------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G              S     TF +   ++  A   I+ E       R   IND  +  
Sbjct: 55  AGDASQKCVVEGVFAISDYHLKTFFKANDLDYDASTIIRREILPSGKSRAF-INDTPV-T 112

Query: 113 VDELN 117
           + +L+
Sbjct: 113 LSQLS 117


>gi|331086442|ref|ZP_08335522.1| hypothetical protein HMPREF0987_01825 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330406208|gb|EGG85731.1| hypothetical protein HMPREF0987_01825 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 424

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +KIK+++I  F+++    +  +   TI +G N  GK+N +  I F
Sbjct: 1  MKIKYIHIKNFKSFGEQIINLE-NLTILLGANASGKSNTVSIIRF 44


>gi|329928691|ref|ZP_08282542.1| hypothetical protein HMPREF9412_3137 [Paenibacillus sp. HGF5]
 gi|328937587|gb|EGG34003.1| hypothetical protein HMPREF9412_3137 [Paenibacillus sp. HGF5]
          Length = 684

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +K+  + I  FR++    ++   +    +G N  GKT  L A+     G     +   +V
Sbjct: 1  MKLSKVKIKNFRSFGQEEVIQIDELVALIGSNSCGKTTFLNAM-LKIFGE---TSKEREV 56

Query: 65 TRIG 68
           R  
Sbjct: 57 IRSD 60


>gi|325107285|ref|YP_004268353.1| hypothetical protein Plabr_0704 [Planctomyces brasiliensis DSM
          5305]
 gi|324967553|gb|ADY58331.1| hypothetical protein Plabr_0704 [Planctomyces brasiliensis DSM
          5305]
          Length = 708

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE 45
          +K+    +S FR   ++ + FD + T+FVG N  GKT+  E
Sbjct: 1  MKLIHACVSGFRRLENVLIEFDERETVFVGPNNSGKTSAAE 41


>gi|302345416|ref|YP_003813769.1| DNA repair protein RecN [Prevotella melaninogenica ATCC 25845]
 gi|302148983|gb|ADK95245.1| DNA repair protein RecN [Prevotella melaninogenica ATCC 25845]
          Length = 556

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 69/225 (30%), Gaps = 24/225 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  +     L + F +  ++  G+ G GK+ IL AI  L   R     + +   +
Sbjct: 2   LKHLYIKNYTLIDQLDIAFHSGFSVITGETGAGKSIILGAIGLLLGNR-----ADSKQIK 56

Query: 67  IGS------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
            G                F +F   + ++   + +I              IND  + +  
Sbjct: 57  QGEKKCTIEAHFDLSNYGFESFFEEQDIDFEPEDTIVRRELTATGKSRAFINDTPVSLQM 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR---HRRRMIDFERLMRGRNR 171
                 ++  +      +       +   +D ++         +R    D++     R  
Sbjct: 117 MRALGEQLIDIHSQHQNLLLQKDDFQLNVVD-IIAQDSKELANYRSAYQDYKEA-ERRLS 174

Query: 172 LLTEGYFDSSWCSSIEA-QMAELGVK-INIARVEMINALSSLIME 214
            + E  F +         Q  EL    +   R E +   S  +  
Sbjct: 175 DMKEQIFKAQENEEFMRFQFNELDNAGLIEGRQEELEQESETLSH 219


>gi|242088357|ref|XP_002440011.1| hypothetical protein SORBIDRAFT_09g024390 [Sorghum bicolor]
 gi|241945296|gb|EES18441.1| hypothetical protein SORBIDRAFT_09g024390 [Sorghum bicolor]
          Length = 1244

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 3  NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
           R+ IK + +  F++YA   R+  F    +  VG NG GK+N+++A+ F+     +  R 
Sbjct: 21 PRLFIKEMVLRNFKSYAGEQRIGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRL 80

Query: 59 ASYADVTRIGSPS 71
             +++    S  
Sbjct: 81 NKVSELIHNSSNH 93


>gi|241763538|ref|ZP_04761590.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
 gi|241367269|gb|EER61609.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
          Length = 703

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +K+K + IS F+   +  L  ++  T  VG+N  GK+++++AI F
Sbjct: 1  MKLKHIAISNFKGIQADNLSPES-FTCLVGENNAGKSSVMQAIVF 44


>gi|217031968|ref|ZP_03437470.1| hypothetical protein HPB128_3g87 [Helicobacter pylori B128]
 gi|216946437|gb|EEC25042.1| hypothetical protein HPB128_3g87 [Helicobacter pylori B128]
          Length = 540

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 61/179 (34%), Gaps = 35/179 (19%)

Query: 10  LNISEFRNYA---------SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           L +  FRN           +          I VG+N VGK+N+LEA+            +
Sbjct: 8   LKLHHFRNLGRNLPAELLLNSSFEKHGGLVILVGENNVGKSNVLEALKIF---------N 58

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV-VDELNKH 119
            ADV       +F      + +  L + +I        S   L+I    +   + EL+K 
Sbjct: 59  DADVKLCSEKDYFKAHESEDAVLNLEEETILDHKTIGFSCVDLKIQTKEVSEGLKELSKI 118

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMRGRNRLL 173
           L           +F G       F++ ++      +    ++ ++       R  N LL
Sbjct: 119 LISYPFC-----VFVGS------FINLIMSYGVLDSFLKSYKEKLKLSSFSTRQANHLL 166


>gi|253699070|ref|YP_003020259.1| hypothetical protein GM21_0421 [Geobacter sp. M21]
 gi|251773920|gb|ACT16501.1| conserved hypothetical protein [Geobacter sp. M21]
          Length = 368

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 13/72 (18%)

Query: 1  MTNRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          M +   +  L I  F++  +L     +    IF+G NG GK+N++E    L      R  
Sbjct: 1  MAHS--LDRLTIRGFKSIRALEDFKLND-LNIFIGGNGAGKSNLVEFFRLL------RTV 51

Query: 60 SYADV---TRIG 68
             ++    R G
Sbjct: 52 IDGNLNDYIRSG 63


>gi|307725761|ref|YP_003908974.1| SMC domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307586286|gb|ADN59683.1| SMC domain protein [Burkholderia sp. CCGE1003]
          Length = 874

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/188 (19%), Positives = 76/188 (40%), Gaps = 4/188 (2%)

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL-TGFLD 233
           E +      + + +Q+  +G      R+  + A         ++ +     LSL    L 
Sbjct: 675 EQHERQVRIAHLRSQLETVGASGLGERLAALEAKIEQATRRKEELSLRAGALSLLDEVLV 734

Query: 234 GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQK 293
            + D +   L+    ++L    K         +G   S   +D   +A T+   S G ++
Sbjct: 735 AERDAAVAQLRAPLTERLGHYLKRIFPQSTLALGDDLSPATLDRYGRADTLEALSFGTRE 794

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTD 351
            + +   LA+A L+    G   +L+LD+ + H D  +R+A+ R + D  +  QI +    
Sbjct: 795 QLGILTRLAYADLLKAA-GRPTLLMLDDAAVHTDAARRDAIKRALLDAATRHQILVFTCH 853

Query: 352 KSVFDSLN 359
             ++D + 
Sbjct: 854 PELWDDMG 861



 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +K++ + I EF+ +              +FVG N  GK+ I EA+  +   R ++ +   
Sbjct: 1  MKLQSIAIQEFKQFTGRLFIDDLQPGLNLFVGPNEAGKSTIAEAVRAVFLER-YKASHLK 59

Query: 63 DVTRIGSPSF 72
          D+   G  S 
Sbjct: 60 DLLPWGKASG 69


>gi|167856011|ref|ZP_02478756.1| DNA repair protein RecN [Haemophilus parasuis 29755]
 gi|167852850|gb|EDS24119.1| DNA repair protein RecN [Haemophilus parasuis 29755]
          Length = 559

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 81/277 (29%), Gaps = 39/277 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F     L L  +   ++  G+ G GK+  ++A+      R       + + R
Sbjct: 2   LTQLTINNFAIVRHLTLELNEGMSVITGETGAGKSIGIDALGLCLGYRS-----ESSMIR 56

Query: 67  IGSP----------------SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VV 109
            G+                   +     +   +   +  ++     +   +    N  + 
Sbjct: 57  NGADKADISATFSMQPTSPAYLWLKEHELLDEDNPQECILRRMINQEGRSKAFVNNHPIP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF---ERLM 166
           +  + EL ++L       +   +      E +  +      + P        +    +L 
Sbjct: 117 VSQLRELGQYLIHLNGQHAPQLLLK---SEYQLEVVDNYANLHPLLAEMATQYHSWRKLH 173

Query: 167 RG-RN--RLLTEGYFDSSWCSSIEAQMAELGV--------KINIARVEMINALSSLIMEY 215
           +  +N  +   E             ++ E  +        + + AR+     L+ L    
Sbjct: 174 KQVKNFHQQCQENEARKQLLQYQVEELDEFAIKEGEFEQLEEDHARLANSEQLTELSQSV 233

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
           +   +  +  +    +   +  +    +  +Y   L 
Sbjct: 234 LNLLSDDNANVDTMLYRAIRDLEELVEVDSQYQSALE 270


>gi|167586972|ref|ZP_02379360.1| ATPase-like protein [Burkholderia ubonensis Bu]
          Length = 342

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +  L I+ +R+   L +   A   +  G NG GK+++  A+  L+
Sbjct: 3  ALHTLAIANYRSLRELIVPLAA-LNVVTGPNGSGKSSVYRALRLLA 47


>gi|187250642|ref|YP_001875124.1| putative ATP-dependent endonuclease [Elusimicrobium minutum
          Pei191]
 gi|186970802|gb|ACC97787.1| putative ATP-dependent endonuclease [Elusimicrobium minutum
          Pei191]
          Length = 578

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KIK ++I  FR+        ++ ++I  G+N  GKT  + A+   
Sbjct: 1  MKIKNVHIHNFRSILDADFPLES-YSILAGENNSGKTTFINALRVF 45


>gi|39937586|ref|NP_949862.1| hypothetical protein RPA4528 [Rhodopseudomonas palustris CGA009]
 gi|39651445|emb|CAE29968.1| conserved hypothetical protein [Rhodopseudomonas palustris
          CGA009]
          Length = 388

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  L +S +R+   +RL       +  G NG GK+++  A+  L+
Sbjct: 2  ITRLAVSGYRSLRDVRLSLGP-LNVVTGANGTGKSSLYRALRLLA 45


>gi|86143164|ref|ZP_01061566.1| hypothetical protein MED217_08280 [Leeuwenhoekiella blandensis
          MED217]
 gi|85830069|gb|EAQ48529.1| hypothetical protein MED217_08280 [Leeuwenhoekiella blandensis
          MED217]
          Length = 700

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +K   + I+ FR Y       L    D    +  G NG GKTN+L +I +   G
Sbjct: 1  MKFSNIKINNFRQYYNAVNIDLTTDTDRNIVVIGGRNGYGKTNLLLSIVWCLYG 54


>gi|330972233|gb|EGH72299.1| putative nucleoside triphosphate hydrolase domain-containing
           protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 598

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 60/360 (16%), Positives = 118/360 (32%), Gaps = 72/360 (20%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
           +++  + I  FRN+  L +       + VG+N VGK+N+L A+  L   S     R    
Sbjct: 1   MQLTRVAIRNFRNFKDLDVPLSGNIVV-VGENRVGKSNLLYALRLLLDPSLADSAR---- 55

Query: 62  ADVTRIGSPSFF------------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
               ++G   F+            +    ++G E   D+   L      +   L  +   
Sbjct: 56  ----QLGQGDFWDGLGEPLEDEKITILIEIQGFEEDVDLLAML------TDYRLDDDADT 105

Query: 110 IRVVDELNKHLRISWLVPSMDR---IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
           +R+  EL     +     S +    I  G   ER+RF               +    R+ 
Sbjct: 106 VRLTYELRPLPNLGRFPASDEDYEFICFGGETERKRF------------GHDLRR--RIT 151

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
                 L +   D +                   R   +  L       V ++    ++ 
Sbjct: 152 MDTLPALRDAEGDLAM-----------------WRRSPLRPLIERAFSEVSRDELGEVQE 194

Query: 227 SLTGFLDGKFDQSFCALKEE-----YAKKLFDGRKMDSMSRRTLIGPHR--SDLIVDYCD 279
           ++    +           EE     YA      + ++     + I   R   ++ +    
Sbjct: 195 AIRTATNDLTQFDPVRTLEENLGAMYASMSGPNQYIEPRLGFSTIDITRLYRNVKLLIDG 254

Query: 280 KAITIAHGSTGEQKVVLVGIF-LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
              TI+  S G   VV + +  L   +L++       +L ++E  AHL    + +++R +
Sbjct: 255 GLRTISEASLGSANVVFLSLKTLELKQLMNENRRDHTLLGIEEPEAHLHPHLQRSVYRHL 314


>gi|329770350|ref|ZP_08261733.1| DNA repair protein RecN [Gemella sanguinis M325]
 gi|328836708|gb|EGF86364.1| DNA repair protein RecN [Gemella sanguinis M325]
          Length = 565

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 82/248 (33%), Gaps = 26/248 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI +F    +  +      T+  G+ G GK+ IL AIS LS   G R ++     R
Sbjct: 2   LIQLNIKQFGIIENATIELKNGLTVLSGETGAGKSMILAAISQLS---GQRTSTS--YIR 56

Query: 67  IGSPSF------------FSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVV 113
            G                       E    + D  I +      S + + ++N  ++ + 
Sbjct: 57  YGEEKASVEGVFDFPKNKAVVNIFKELDLDIEDEVIIIRRDIYNSGKSVCRVNGTIVNLS 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERLMRGR 169
                   +  +    D     +       +D      +  I   +R    ++ +L+  +
Sbjct: 117 TLKKISAYLLDIHEQHDNQILLVEKNHLNLIDSFNKEDINPILRNYREIYKEY-KLINEK 175

Query: 170 NRLLTEGYFDSSW-CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
              L +   D       ++ Q  EL         ++I  L   I      E    +  S+
Sbjct: 176 IENLKQQESDVLQKVDFLKFQYQELAQMKLKKDEDLI--LEKDIDYLENFEKVNTLAYSI 233

Query: 229 TGFLDGKF 236
           T  +DG++
Sbjct: 234 TDGIDGEY 241


>gi|328955579|ref|YP_004372912.1| DNA replication and repair protein RecN [Coriobacterium glomerans
           PW2]
 gi|328455903|gb|AEB07097.1| DNA replication and repair protein RecN [Coriobacterium glomerans
           PW2]
          Length = 550

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 77/232 (33%), Gaps = 32/232 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + + ++ L +          LV     T+  G+ G GKT +L A+  L   R     +
Sbjct: 1   MLDELHVENLAL-----IRDAVLVPGTGLTVLTGETGAGKTALLSALKLLMGER-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--IRVVDELNK 118
              + R G  S             +  +S+      D   R ++++  +  +R + +   
Sbjct: 51  DVSMVREGERSASVEGRLFLNPHDIEGVSVCRRIGSDGRSR-VRLDGEISSVRALTQRVA 109

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLD-RMVFAIDPRHRRRMIDFERLMRG-RNRLLTEG 176
                       R+    +      +D      I+P        +   +   R+      
Sbjct: 110 SHIDLCGQHEHQRLL--DAATHVEMVDAWASREIEP----LRSAYVAALEQARSARCE-- 161

Query: 177 YFDSSWCSSIEAQMAELGVKINIAR--VEMINALSSLIMEY-VQKENFPHIK 225
                    IEA +   G +++ AR  +E IN +     E    +E+ P I+
Sbjct: 162 ------LDRIEAAIRTRGSRLDEARFTLERINEVDPGADELETLEESLPRIE 207


>gi|320657044|gb|EFX24867.1| recombination and repair protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 553

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|207727472|ref|YP_002255866.1| hypothetical protein RSMK03784 [Ralstonia solanacearum MolK2]
 gi|206590708|emb|CAQ56320.1| conserved hypothetical protein [Ralstonia solanacearum MolK2]
          Length = 885

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQI 345
           S GEQ+ + +  F+A   L+         ++ D+  + LD  +R  + R +       Q+
Sbjct: 634 SEGEQRALALATFMAEVSLVP----GHGAVIFDDPMSSLDHARRERVARRLVTEARTRQV 689

Query: 346 FMTGTDKSVFDSLNETAKFMRIS 368
            +   D +  + L + +    ++
Sbjct: 690 IIFTHDLAFANHLADESARQSVA 712


>gi|85712932|ref|ZP_01043972.1| ATPase involved in DNA repair, RecN [Idiomarina baltica OS145]
 gi|85693238|gb|EAQ31196.1| ATPase involved in DNA repair, RecN [Idiomarina baltica OS145]
          Length = 554

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 52/197 (26%), Gaps = 26/197 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F    T   G+ G GK+  L+A+     GR     + A+  R
Sbjct: 2   LTELHIRNFAIVKQLDIEFKNGMTAITGETGAGKSIALDALGLCLGGR-----ADANWVR 56

Query: 67  IGSPSFFS-----------TFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G                     +   E   D+   L     +  R    +N   +    
Sbjct: 57  PGCDKTDISARFTITHDSPAHRWLVDNEFDDDLECVLRRTISKDGRSRAWVNGAPVTLTQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
              L   L           +       +R  LD+     +         R     E+  R
Sbjct: 117 QRTLAPTLVNIHGQHEHQLLVKE--EHQRELLDQFAQHAELITEVQESYRNWAATEKRFR 174

Query: 168 GRNRLLTEGYFDSSWCS 184
              +   E        S
Sbjct: 175 QHQQRKEELAAQKQLIS 191


>gi|150016495|ref|YP_001308749.1| hypothetical protein Cbei_1619 [Clostridium beijerinckii NCIMB
           8052]
 gi|149902960|gb|ABR33793.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
           8052]
          Length = 663

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK L I  F+   +L + F     I  G N  GKT I ++  +L  G+  +     ++  
Sbjct: 6   IKKLIIKNFKGVKALEVDFGNITNIL-GGNATGKTTIFDSFCWLLFGKDSKDRKDFEI-- 62

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
               +  S    + G+E      +++   +    R L       + + +
Sbjct: 63  ---KTLDSNGQAIHGLEHSVTGILEVNGEEIELQRILMEKWTKKKGLAD 108


>gi|296227686|ref|XP_002759477.1| PREDICTED: structural maintenance of chromosomes protein 4 isoform
           3 [Callithrix jacchus]
          Length = 1262

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 53  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 112

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 113 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 141


>gi|242769947|ref|XP_002341877.1| DNA repair protein Rad50 [Talaromyces stipitatus ATCC 10500]
 gi|218725073|gb|EED24490.1| DNA repair protein Rad50 [Talaromyces stipitatus ATCC 10500]
          Length = 1328

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 1  MTNRIKIKFLNISEFRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +T R KI  L+I   R++ +     + F    T+ VG NG GKT I+E + + + G
Sbjct: 26 ITPRSKIDKLSILGVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 81



 Score = 39.9 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 78/245 (31%), Gaps = 41/245 (16%)

Query: 133  FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS------SI 186
                   RR++ D + +    R    + D  + +  +N  +    F            ++
Sbjct: 1033 LKDSDNTRRQYSDNLSYRQSCRLLEEVQDEIQQLEEQNAEIDRSRFKEESERWTRKHNAL 1092

Query: 187  EAQMAELGVKINIARVEMINALSSL----------IMEYVQKENFPHIKLSLTGFLDGKF 236
             AQ A    ++     +++  L+              E   K       +   G   G  
Sbjct: 1093 AAQQASKMGEMKSKDDQLLQLLADWNTDYKDAAANYKEAHIKVETTKAAVDDLGRYGGAL 1152

Query: 237  DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT------------- 283
            D++         +++   R ++ + +RT  G     +++   ++                
Sbjct: 1153 DKAIMKYHSLKMEEI--NRIVEELWQRTYRGTDVDTILIRSDNENAKGNRSYNYRVCMVK 1210

Query: 284  -------IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
                       S G++ +  + I LA A       G   ++ LDE + +LD D   +L  
Sbjct: 1211 QGAEMDMRGRCSAGQKVLASIIIRLALAECFGVNCG---LIALDEPTTNLDRDNIRSLAE 1267

Query: 337  IVTDI 341
             + DI
Sbjct: 1268 SLHDI 1272


>gi|193785579|dbj|BAG54637.1| unnamed protein product [Homo sapiens]
          Length = 1263

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 54  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 113

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 114 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 142


>gi|192293378|ref|YP_001993983.1| ATPase, RecF-like protein [Rhodopseudomonas palustris TIE-1]
 gi|192287127|gb|ACF03508.1| ATPase, RecF-like protein [Rhodopseudomonas palustris TIE-1]
          Length = 388

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  L +S +R+   +RL       +  G NG GK+++  A+  L+
Sbjct: 2  ITRLAVSGYRSLRDVRLSLGP-LNVVTGANGTGKSSLYRALRLLA 45


>gi|51473382|ref|YP_067139.1| DNA repair protein RecN [Rickettsia typhi str. Wilmington]
 gi|81826333|sp|Q68XI5|RECN_RICTY RecName: Full=DNA repair protein recN; AltName: Full=Recombination
           protein N
 gi|51459694|gb|AAU03657.1| DNA repair protein RecN [Rickettsia typhi str. Wilmington]
          Length = 554

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 84/255 (32%), Gaps = 53/255 (20%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            L++  F     L + F+    +  G+ G GK+ +L+AI F    +     +  +V + G
Sbjct: 4   SLSVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILFCLGYK-----TSNNVIKHG 58

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
                                               +N       DE+ K L  +++ P 
Sbjct: 59  KDYTVVNI-------------------------IFSLN-------DEIKKFLIQNFIEPE 86

Query: 129 MDRIFSGLSMERRR---FLDRMVFAIDPRHRRRMIDFERLM--RGRNRLLTEGYFDSSWC 183
              +   L     R   F++  +  +     +++ ++   +  +  N  L E        
Sbjct: 87  ELLLVKCLQKVEGRKNFFINNQI--VTKTLMKQLANYLFELHGQNNNITLLEASTQRDIL 144

Query: 184 SSI------EAQMAELGVKINIARVEM--INALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
            S         Q+A+        R E+  I    + I + +   +F   +L+      G+
Sbjct: 145 DSYGNLLEFRVQLAKCYQIWQNTRKEIEEITVKQNEIEQEIDYLSFVTEELTKLNIQIGE 204

Query: 236 FDQSFCALKEEYAKK 250
            +++   ++++   K
Sbjct: 205 -EETLTNIRKDLQNK 218


>gi|309790945|ref|ZP_07685487.1| DNA repair protein RecN [Oscillochloris trichoides DG6]
 gi|308227059|gb|EFO80745.1| DNA repair protein RecN [Oscillochloris trichoides DG6]
          Length = 580

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 22/131 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I +F     L L  +A   +  G+ G GK+ I++A   L   RG R      + R
Sbjct: 2   LLELQIRDFAIIDRLHLRLEAGFNVLTGETGAGKSIIIDA---LGTLRGERT--DVSLVR 56

Query: 67  IGSPSF-----------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            G                        +   +  +G   ++ ++     RSV  +    V 
Sbjct: 57  AGCSRARIEGIFSLEDSPHLIPVLQEYGVYDEDDGQIILAREISAESGRSVARINGRAVS 116

Query: 110 IRVVDELNKHL 120
             V+ E+   L
Sbjct: 117 TSVLREVGGQL 127


>gi|282882129|ref|ZP_06290770.1| DNA repair protein RecN [Peptoniphilus lacrimalis 315-B]
 gi|281298159|gb|EFA90614.1| DNA repair protein RecN [Peptoniphilus lacrimalis 315-B]
          Length = 555

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  +     +++ F     +  G+ G GK+ I++A+  +  GR     +  DV +
Sbjct: 2  LLELNIENYAIIEDMKINFQKGLNVITGETGSGKSIIIDALGMVLGGR-----ANKDVIK 56

Query: 67 IGSPSFFSTFARVEGMEGLADISIK 91
           G       F  +E +    D  IK
Sbjct: 57 AGKD-----FCHIEAIFTTYDKDIK 76


>gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
          psy62]
 gi|254547865|gb|ACT57646.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 554

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            L+I       SL + F A  +I  GD G GK+ +L+A+  ++ GRG        + R 
Sbjct: 2  TRLSIYNIVLIESLDIDFSAGLSILSGDTGSGKSILLDALILVTGGRG-----DGGLVRR 56

Query: 68 GSPSFFSTFA 77
           +        
Sbjct: 57 HAEKGQVVAV 66


>gi|149204084|ref|ZP_01881052.1| hypothetical protein RTM1035_11200 [Roseovarius sp. TM1035]
 gi|149142526|gb|EDM30571.1| hypothetical protein RTM1035_11200 [Roseovarius sp. TM1035]
          Length = 641

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 5  IKIKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +K+K + I  F++   S  +      T  VG N  GK+  LEA+  L P +G
Sbjct: 1  MKLKTVRIDHFKHVLDSTEVAIQPDITCLVGKNESGKSAFLEALRRLKPAQG 52


>gi|126724445|ref|ZP_01740288.1| hypothetical protein RB2150_11456 [Rhodobacterales bacterium
           HTCC2150]
 gi|126705609|gb|EBA04699.1| hypothetical protein RB2150_11456 [Rhodobacterales bacterium
           HTCC2150]
          Length = 870

 Score = 45.3 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 85/263 (32%), Gaps = 44/263 (16%)

Query: 141 RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW-----------CSSIEAQ 189
           RRFL   +   +     R++  +   R R  L   G  D                ++E +
Sbjct: 445 RRFLADEMGKSELASALRLLVLKLSWRMRALLRNNGETDHELPEFTQVGLQGAIDALEKR 504

Query: 190 -MAELGVKINIARVEMINALSS-------------LIMEYVQKENFPHIKLSLTGFLDGK 235
            +A L  + +  R  + + L               ++ E  +++   +I+ +L       
Sbjct: 505 ALALLSDEESEERKALRSELLELHDRQLLGGVKDDVVAEIGRRKAVSNIEDALKDTRPNA 564

Query: 236 FDQSFCALKEEYAKKLFDGR-------------KMDSMSRRTLIGPHRSDLIVDYCDKAI 282
             Q   AL E        GR             +++    R+  G  R  + +       
Sbjct: 565 ITQKNTALSEALITDRLRGRFSKEIDNLHLAGLEIELEQARSQHGVSRFRVSLIESKSDN 624

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
                S GE + V +  F+A      + +G    ++ D+  + LD   R A+   + + G
Sbjct: 625 AGDILSEGEYRCVALAGFMAELATNDSGSG----IIFDDPVSSLDHLHREAIATRLAEEG 680

Query: 343 --SQIFMTGTDKSVFDSLNETAK 363
              Q+ +   D      L    +
Sbjct: 681 RNRQVIVFTHDLPFLYMLRNACR 703


>gi|311993043|ref|YP_004009909.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          CC31]
 gi|284177881|gb|ADB81547.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          CC31]
          Length = 562

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 5  IKIKFLNISEFRNY-----ASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          +KI  LN  +++N        + +  D    T+  G NG GK+ +LEAI+F   G+ FR 
Sbjct: 1  MKIFKLNRVKYQNIMSVGGQPIDIQLDKVHKTLITGKNGAGKSTMLEAITFALFGKPFRD 60

Query: 59 ASYADVTR 66
               +  
Sbjct: 61 FKKGQLIN 68


>gi|309365041|emb|CAP23745.2| CBR-SMC-6 protein [Caenorhabditis briggsae AF16]
          Length = 1152

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQ-HTIFV--GDNGVGKTNILEAISFLSPGRGF---RRA 59
           ++  + +  F  +A+L++ F+ + +  F   G NG GK+ +  AI+    GRG    R +
Sbjct: 49  RVASVKLQNFMCHANLQIDFNTKQNNCFYIGGPNGSGKSALFAAINLGLGGRGSDNDRGS 108

Query: 60  SYADVTRIGSPS 71
           +     + G+P 
Sbjct: 109 TVKSYIKDGTPQ 120


>gi|256845854|ref|ZP_05551312.1| DNA repair protein RecN [Fusobacterium sp. 3_1_36A2]
 gi|256719413|gb|EEU32968.1| DNA repair protein RecN [Fusobacterium sp. 3_1_36A2]
          Length = 558

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 16/125 (12%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ ++ L I        L + FD    +  G+ G GK+ IL  I+ L   +     +
Sbjct: 1   MGRKLMLRELKIGNLAIIDELDIEFDKGFIVLTGETGAGKSIILSGINLLIGEK-----A 55

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADI----------SIKLETRDDRSVR-CLQINDVV 109
             D+ R G  +  +        E    +           I +     RS +    +N+V 
Sbjct: 56  SVDMIRDGEENLVAQGVFDVDEEQKKKLEAMGVDIDGDEIIIRRSYSRSGKARAFVNNVR 115

Query: 110 IRVVD 114
           I + D
Sbjct: 116 ITLAD 120


>gi|198474490|ref|XP_002132702.1| GA25741 [Drosophila pseudoobscura pseudoobscura]
 gi|198138414|gb|EDY70104.1| GA25741 [Drosophila pseudoobscura pseudoobscura]
          Length = 234

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 13/129 (10%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYA 62
           K+  +++  F  + + R+ F       VG NG GK+  + A++    G      R AS  
Sbjct: 38  KVISIHVENFMFHENFRVEFGPNTNFLVGKNGSGKSATITALTVGLGGTARASSRAASIP 97

Query: 63  DVTRIGSPSFFSTFA-------RVEGME-GLADISIKLETRDDRSVRCLQ--INDVVIRV 112
            + + G  +             R +    G   +++    R   S   L+     +V R 
Sbjct: 98  KLIKKGERAAKIEITLCNIGWNRFDAEHMGPDYLTVVRHIRQSSSTYELKDARGRIVSRK 157

Query: 113 VDELNKHLR 121
           +D++ + LR
Sbjct: 158 LDDVKRLLR 166


>gi|326479028|gb|EGE03038.1| DNA repair protein Rad50 [Trichophyton equinum CBS 127.97]
          Length = 690

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          KI  L+I   R++ +     + F    T+ VG NG GKT I+E + + + G
Sbjct: 27 KIDKLSILGVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 77


>gi|325955808|ref|YP_004286418.1| ABC transporter ATP-binding protein [Lactobacillus acidophilus
           30SC]
 gi|325332373|gb|ADZ06281.1| ABC transporter ATP-binding protein [Lactobacillus acidophilus
           30SC]
          Length = 417

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFA 77
                L   ++ T+  G NGVGKT++ +A++ + P  G       ++ ++    + +  A
Sbjct: 220 LKQADLNLYSKSTLITGPNGVGKTSLFKAMTKMIPYSGSFTYHDHEIAKLHQRKYLAQVA 279

Query: 78  RV--EGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           +V  +  +    +++K E +  +  R     D  I
Sbjct: 280 QVFQKATDQFLTVTVKDELKLSKKDRNSFFTDQKI 314


>gi|315037338|ref|YP_004030906.1| ABC transporter ATP-binding protein [Lactobacillus amylovorus GRL
           1112]
 gi|312275471|gb|ADQ58111.1| ABC transporter ATP-binding protein [Lactobacillus amylovorus GRL
           1112]
 gi|327182645|gb|AEA31092.1| ABC transporter ATP-binding protein [Lactobacillus amylovorus GRL
           1118]
          Length = 417

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFA 77
                L   ++ T+  G NGVGKT++ +A++ + P  G       ++ ++    + +  A
Sbjct: 220 LKQADLNLYSKSTLITGPNGVGKTSLFKAMTKMIPYSGSFTYHDHEIAKLHQRKYLAQVA 279

Query: 78  RV--EGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           +V  +  +    +++K E +  +  R     D  I
Sbjct: 280 QVFQKATDQFLTVTVKDELKLSKKDRNSFFTDQKI 314


>gi|225025930|ref|ZP_03715122.1| hypothetical protein EUBHAL_00166 [Eubacterium hallii DSM 3353]
 gi|224956716|gb|EEG37925.1| hypothetical protein EUBHAL_00166 [Eubacterium hallii DSM 3353]
          Length = 555

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 14/136 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L +          + F     I  G+ G GK+ ++ +I      +      
Sbjct: 1   MLINLHVKNLAL-----IEETEVDFTDHLNILTGETGAGKSILIGSIQSALGAK-----I 50

Query: 61  YADVTRIGSPSFFST---FARVEGMEGL-ADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
             D+ R G  S         + + ++    +  I  E  +    R +  N V+ +V D  
Sbjct: 51  PKDMIRHGCDSALIELIFHTKSQAVQKKMEEFEIPFEDGEIIISRRITNNRVINKVNDIS 110

Query: 117 NKHLRISWLVPSMDRI 132
               R+  L P +  +
Sbjct: 111 VTIGRLKELSPLLLDL 126


>gi|224826989|ref|ZP_03700087.1| chromosome segregation protein SMC [Lutiella nitroferrum 2002]
 gi|224600822|gb|EEG07007.1| chromosome segregation protein SMC [Lutiella nitroferrum 2002]
          Length = 1161

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++     +         +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1  MRLTHIKLSGFKSFVDPTAIPVPGQLVAVIGPNGCGKSNVIDAVRWVLGESSAKQLRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|116073799|ref|ZP_01471061.1| chromosome segregation protein SMC [Synechococcus sp. RS9916]
 gi|116069104|gb|EAU74856.1| chromosome segregation protein SMC [Synechococcus sp. RS9916]
          Length = 1202

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRAS 60
          + I  +    F+++  ++ +  +   T+  G NG GK+NIL+ + F   L+  RG R   
Sbjct: 2  VHINQVGFKHFKSFGGAVTIPLETGFTVVTGPNGSGKSNILDGVLFCLGLASSRGMRADR 61

Query: 61 YADVTRIG 68
            D+   G
Sbjct: 62 LPDLVNSG 69


>gi|90418185|ref|ZP_01226097.1| DNA repair protein recN [Aurantimonas manganoxydans SI85-9A1]
 gi|90337857|gb|EAS51508.1| DNA repair protein recN [Aurantimonas manganoxydans SI85-9A1]
          Length = 561

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L +  D   ++  G+ G GK+ +L+++S    GRG        + R
Sbjct: 2  LVHLSIRDIVLIERLDIALDEGLSVLTGETGAGKSILLDSLSLALGGRG-----DGGLVR 56

Query: 67 IGSPSFFSTFA 77
           G+     T A
Sbjct: 57 HGAKQGEVTAA 67


>gi|34499363|ref|NP_903578.1| chromosome segregation protein [Chromobacterium violaceum ATCC
          12472]
 gi|34105213|gb|AAQ61569.1| probable chromosome segregation protein [Chromobacterium
          violaceum ATCC 12472]
          Length = 1162

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + ++ F+++     +    Q    +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1  MRLTHIKLAGFKSFVDPTSIAVPGQLVAVIGPNGCGKSNVIDAVRWVLGESSAKQLRGES 60

Query: 61 YADVTRIGSPS 71
            DV   GS S
Sbjct: 61 MQDVIFNGSSS 71



 Score = 37.2 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 7/146 (4%)

Query: 199  IARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
              R E + + S  + + +   +E    I       L   +D     ++E +      GR 
Sbjct: 973  KKRGEYLQSQSDDLNQAMATLEEAIAKIDGETRDMLQTTYDAVNAKMREFFPTLFGGGRA 1032

Query: 257  MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
               ++   L+      +      K  TI   S GE+ +  + +  +   L       AP 
Sbjct: 1033 ELVLTGEDLLDAGVQIIAQPPGKKNSTIHLLSGGEKALTAMSLVFSLFSL-----NPAPF 1087

Query: 317  LLLDEISAHLDEDKRNALFRIVTDIG 342
             LLDE+ A LD+   +    +V  + 
Sbjct: 1088 CLLDEVDAPLDDANTSRFCDLVKQMS 1113


>gi|326436528|gb|EGD82098.1| hypothetical protein PTSG_02778 [Salpingoeca sp. ATCC 50818]
          Length = 1157

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF------LSPGRGFRRAS 60
           +K L++  F  +  L + F        G NG GK+ IL A+         + GRG    +
Sbjct: 109 VKALHLVNFMCHRMLEIKFADNINFINGVNGSGKSAILSALVLGLGAQPTNTGRG--STN 166

Query: 61  YADVTRIGSPSF 72
            +   R G+   
Sbjct: 167 VSSFIRNGARDA 178


>gi|307265154|ref|ZP_07546713.1| DNA repair protein RecN [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919776|gb|EFN49991.1| DNA repair protein RecN [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 338

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 70/206 (33%), Gaps = 24/206 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I          + F+    +  G+ G GK+ +++++  L   R  R     D+ R
Sbjct: 2   LLALSIQNVALIDKAEIQFEEGFNVLTGETGAGKSIVIDSVLLLLGSRASR-----DIIR 56

Query: 67  IGSPS------FFSTFARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDVV 109
            G         FF    + + +E L ++ + LE           T   RS   +    V 
Sbjct: 57  TGEEKAIVEGIFFVDSNKDKIVEILEEVGLSLEEDDTLIINREITSSGRSYCRINGRIVP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLS--MERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           +  + ++   L           +            F D+   ++  + +  + ++ ++  
Sbjct: 117 LSFLSKIGAFLVDILGQHEHQFLLDNTKHLSILDNFGDQKFKSLKEKFKELLEEYRKIQN 176

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
             +    +    +     ++ Q+ E+
Sbjct: 177 EISSFFKDEKEKNETIDLLKYQIEEI 202


>gi|300703139|ref|YP_003744741.1| DNA repair protein recn (recombination protein n) [Ralstonia
           solanacearum CFBP2957]
 gi|299070802|emb|CBJ42099.1| DNA repair protein recN (Recombination protein N) [Ralstonia
           solanacearum CFBP2957]
          Length = 569

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 91/254 (35%), Gaps = 35/254 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F    +L L      T+F G+ G GK+ +++A   L+   G R  + A V R
Sbjct: 2   LRSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDA---LALTLGER--ADAAVVR 56

Query: 67  IGSPSFF---------STFARVEGME-GLADISIKLETRDDRSVR-CLQINDVVI--RVV 113
            G+P               A +E  E    D +I L    D + R    IN   +    +
Sbjct: 57  EGAPRADITAAFDTHPQVAAWLEAHELHGDDGAILLRRTVDAAGRSKAFINGAAVTLAQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNR 171
            E+ + L       +   +    +   RR LD      D       R   ++ ++R    
Sbjct: 117 REVGEQLVDIHGQHAHQLLLKTDAQ--RRLLDAHAGLEDEVRAVGERYRAWQAVVR---- 170

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            L E     S  + +E +  E        +V  +  L+    E+ ++    H +LS    
Sbjct: 171 -LREAAEQQSREAQLERERVE-------WQVNELQKLAPQPGEW-EEVQAEHHRLSHAAS 221

Query: 232 LDGKFDQSFCALKE 245
           L      +   L E
Sbjct: 222 LIEGTRAALDTLSE 235


>gi|239931597|ref|ZP_04688550.1| hypothetical protein SghaA1_25482 [Streptomyces ghanaensis ATCC
           14672]
 gi|291439969|ref|ZP_06579359.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291342864|gb|EFE69820.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 807

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 13/92 (14%)

Query: 3   NRI---KIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
            R+    ++ + +S FR     A L L      T+  G NG GK++  EA+     G   
Sbjct: 59  GRMPGAYLQSVTVSGFRGIGRTARLPLTPGPGLTLVTGRNGSGKSSFAEAVEIALTGDNA 118

Query: 57  RRASYADV-------TRIGSPSFFSTFARVEG 81
           R    +D+          G     +   RV+G
Sbjct: 119 RWRGRSDIWRRSWRNLHHGEQPQVTVELRVDG 150


>gi|227328445|ref|ZP_03832469.1| recombination and repair protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 553

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 91/261 (34%), Gaps = 46/261 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  ++  G+ G GK+  ++A+      R       A + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMSVITGETGAGKSIAIDALGLCLGNRS-----DASMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            ++   +  ++     D   R   IN   V + 
Sbjct: 57  PGAARADICARFALADTPTARQWLEENQLDDSNECLLRRVISADGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL +HL       +   +       ++  LD   +A +P+    M           R
Sbjct: 116 QLRELGQHLIQVHGQHAHQLLLR--PDHQKHLLD--AYADEPKLLVAMQQVWHQWHQSCR 171

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY------VQKENFPHIK 225
            L              AQ+ +  ++   AR E++      + E+       ++ +  + +
Sbjct: 172 AL--------------AQLQQAAIE-REARRELLQYQLKELNEFSPQPGEYEQIDVEYKR 216

Query: 226 LSLTGFLDGKFDQSFCALKEE 246
           L+ +G L     Q+   L E+
Sbjct: 217 LANSGQLLTMSQQAMQLLSED 237


>gi|219118000|ref|XP_002179784.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217408837|gb|EEC48770.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 635

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 16/100 (16%)

Query: 273 LIVDYCDKAITIAHG--STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
             + +  K +       S G+QK+VL+          +  +    IL+LDE    LD   
Sbjct: 517 FNLTHDPKLLEQHFADLSQGQQKLVLLA---------AAISSRPRILVLDEPCQGLDIVH 567

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
           R  L  +V  +  Q     TD +  D+ + +   + I++H
Sbjct: 568 RRLLLGLVERL-CQ----ATDTNDTDTSSRSITLIYITHH 602


>gi|121608039|ref|YP_995846.1| DNA repair protein RecN [Verminephrobacter eiseniae EF01-2]
 gi|121552679|gb|ABM56828.1| DNA repair protein RecN [Verminephrobacter eiseniae EF01-2]
          Length = 565

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 26/50 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + ++ + + +F    +L L  DA  T+  G+ G GK+ +++A+      R
Sbjct: 1  MALRRITLRDFVIVQALELELDAGFTVLTGETGAGKSILIDALQLALGAR 50


>gi|157819723|ref|NP_001101484.1| structural maintenance of chromosomes protein 6 [Rattus norvegicus]
 gi|149050928|gb|EDM03101.1| SMC6 structural maintenance of chromosomes 6-like 1 (yeast)
           (predicted) [Rattus norvegicus]
          Length = 1097

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 54  IESIQLRNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLK 113

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
              + G  S              ADISI L  R D + R     D ++
Sbjct: 114 GFVKAGQNS--------------ADISITLRNRGDDAFRANVYGDSIV 147


>gi|21262152|emb|CAD32690.1| SMC4 protein [Oryza sativa]
          Length = 1236

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 3  NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
           R+ IK + +  F++YA   R+  F    +  VG NG GK+N+++A+ F+     +  R 
Sbjct: 19 PRLFIKEMVLRNFKSYAGEQRIGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRL 78

Query: 59 ASYADVTRIGSPS 71
             +++    S  
Sbjct: 79 NKVSELIHNSSNH 91


>gi|70733741|ref|YP_257381.1| hypothetical protein PFL_0235 [Pseudomonas fluorescens Pf-5]
 gi|68348040|gb|AAY95646.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 398

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/99 (16%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L ++ +R+   L +    +  +  G NG GK+N+  A+  L+            + +
Sbjct: 2   LKTLAVANYRSINKLVIPLG-RLNLVTGANGSGKSNLYRALRLLAETAQ--GGVVNALAK 58

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
            G           +    ++   + ++    ++ R LQ+
Sbjct: 59  EGGLESTYWAGPEQISRRMSQGEVPIQGGPRKAARRLQL 97


>gi|325264520|ref|ZP_08131250.1| hypothetical protein HMPREF0240_03527 [Clostridium sp. D5]
 gi|324030182|gb|EGB91467.1| hypothetical protein HMPREF0240_03527 [Clostridium sp. D5]
          Length = 620

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++I  L I  F+   ++ +       I VG N  GKT +L+AI
Sbjct: 1  MRITSLRIRNFKYIRNMYIEDIDNALILVGQNNTGKTAVLDAI 43


>gi|317053142|ref|YP_004119496.1| ATPase [Pantoea sp. At-9b]
 gi|316953469|gb|ADU72940.1| ATPase [Pantoea sp. At-9b]
          Length = 387

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 112/364 (30%), Gaps = 48/364 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +   +I+ +R+   L L    + ++  G+NG GK+N+ +A+  L+       A    V  
Sbjct: 2   LTCFSIANYRSICDLTLPLG-RLSVITGENGSGKSNLYKALRLLAE-----TAKEG-VVN 54

Query: 67  IGSPSFFSTFARVEGME----GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
             +     T     G E    G+    + +E     +V  L++         +   +   
Sbjct: 55  SLAEEGGLTSTYWAGPETLSRGMKRGDVPIEGGPRHNVVRLKLG-----FASDHFGYAIT 109

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             L       F+     +R  +        P +R         +  R   + +   D  W
Sbjct: 110 LGLPTPSSSAFALDPEIKREVIFNG-----PSYRPASS-----LVERKGNMLKVRTDRQW 159

Query: 183 ---------CSSIEAQMAE--LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                     SS+  Q+A+     ++   R EMI        ++ + +     + S    
Sbjct: 160 QVVAQKVPVYSSMFDQLADPTTAPEVFQVR-EMIRNWR--FYDHFRTDKDAPARQSQLLT 216

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
                      L       +  G +           P     ++ + +    IA    G 
Sbjct: 217 RTPVLHHDGRDLASALQTIIETGDRHALAHAIDDAFPGSRLEVIHHSEGRSAIAFYQQGL 276

Query: 292 QKVVLVG------IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGS 343
            + +         +          T     +++L+E    L  D   AL R++      S
Sbjct: 277 LRPLSAAELSDGTLRFILWVAALLTPRPPELMVLNEPETSLHPDLLPALARLILQASQQS 336

Query: 344 QIFM 347
           QI++
Sbjct: 337 QIWV 340


>gi|239627497|ref|ZP_04670528.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517643|gb|EEQ57509.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 552

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 68/195 (34%), Gaps = 25/195 (12%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L +          + F     I  G+ G GK+ I+ +++    G+  R   
Sbjct: 1   MLLELHVKNLAL-----IEKADVEFGEGLNILTGETGAGKSIIIGSVTMALGGKASR--- 52

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADI-SIKLETRDDRSV---RCLQINDVVIRVVDE 115
             +  R G+  ++      V G +    +  +++E  +D +V   R +  +  V R+ DE
Sbjct: 53  --ESIRHGADYAYVELVFSVSGEDKAKALKELEVEPAEDGTVIVSRKIMASRSVSRINDE 110

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG--RNRLL 173
                R+  +      +      E +  L         +H   +  + +      + ++ 
Sbjct: 111 TVTTARLRQIT--GLLLDIHGQHEHQSLL------YKSKHLEILDAYVKASTQPVKQKIA 162

Query: 174 TEGYFDSSWCSSIEA 188
            E     +    +E 
Sbjct: 163 KEYQSYRALIKRLEE 177


>gi|291400090|ref|XP_002716339.1| PREDICTED: SMC4 structural maintenance of chromosomes 4-like 1
           [Oryctolagus cuniculus]
          Length = 1157

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 78  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 137

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 138 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 166


>gi|237753067|ref|ZP_04583547.1| hypothetical protein HWAG_00217 [Helicobacter winghamensis ATCC
          BAA-430]
 gi|229375334|gb|EEO25425.1| hypothetical protein HWAG_00217 [Helicobacter winghamensis ATCC
          BAA-430]
          Length = 177

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          IK + I  FR    + L   ++  IFVG   + KT+ILEA+  
Sbjct: 19 IKEIGIKNFRGIKDISLKDFSKINIFVGKANMRKTSILEALYL 61


>gi|227537941|ref|ZP_03967990.1| DNA repair protein RecN [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242243|gb|EEI92258.1| DNA repair protein RecN [Sphingobacterium spiritivorum ATCC 33300]
          Length = 553

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 10/115 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP----GRGFRRASYA 62
           +  L I  +    +L + FD    I  G+ G GK+ I+ A+S +      G+ F      
Sbjct: 2   LSRLYIRNYALIDTLDISFDKGLNIITGETGAGKSIIMGALSLILGSRIEGKYFFNQDQK 61

Query: 63  DVT----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            +      IG+     +F     M+   +  I+ E   D   R   IND  + + 
Sbjct: 62  CIIEGYFNIGA-YHLQSFFDEHDMDYETETIIRREISVDGKSRAF-INDSPVNLA 114


>gi|190341559|gb|ACE74856.1| RecN [Enterobacter pyrinus]
          Length = 553

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 63/201 (31%), Gaps = 19/201 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----R-RASY 61
           +  L IS F     L + F +  T   G+ G GK+  ++A+      R      R  AS 
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTAITGETGAGKSIAIDALGLCLGNRAEGDIVRAGASR 61

Query: 62  ADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRVVDELN 117
           AD+  R       +    +E  +        L        R    IN   V +  + EL 
Sbjct: 62  ADLCARFNLKDTPAALRWLEQNQLEDGRECLLRRVISSDGRSRGFINGTAVPVSQLRELG 121

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + L       +   +       ++  LD     +++         +     R +    +L
Sbjct: 122 QLLIQIHGQHAHQLLVK--PEHQKTLLDGYIGEQVLTQRMSEQYAQWHQSCRALAHHQQL 179

Query: 173 LTEGYFDSSWCSSIEAQMAEL 193
             E    +        Q+ EL
Sbjct: 180 SQERAARAELLEY---QLKEL 197


>gi|194041163|ref|XP_001927540.1| PREDICTED: structural maintenance of chromosomes protein 4 [Sus
           scrofa]
          Length = 1288

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|119599048|gb|EAW78642.1| SMC4 structural maintenance of chromosomes 4-like 1 (yeast),
           isoform CRA_c [Homo sapiens]
          Length = 1289

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|114590126|ref|XP_001157958.1| PREDICTED: SMC4 structural maintenance of chromosomes 4-like 1
           isoform 12 [Pan troglodytes]
 gi|114590128|ref|XP_001158014.1| PREDICTED: SMC4 structural maintenance of chromosomes 4-like 1
           isoform 13 [Pan troglodytes]
 gi|114590130|ref|XP_001158064.1| PREDICTED: structural maintenance of chromosomes protein 4 isoform
           14 [Pan troglodytes]
 gi|114590132|ref|XP_001157855.1| PREDICTED: SMC4 structural maintenance of chromosomes 4-like 1
           isoform 10 [Pan troglodytes]
 gi|114590134|ref|XP_001158124.1| PREDICTED: SMC4 structural maintenance of chromosomes 4-like 1
           isoform 15 [Pan troglodytes]
          Length = 1288

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|109048423|ref|XP_001099428.1| PREDICTED: structural maintenance of chromosomes protein 4-like
           isoform 14 [Macaca mulatta]
 gi|297286511|ref|XP_001098806.2| PREDICTED: structural maintenance of chromosomes protein 4-like
           isoform 8 [Macaca mulatta]
          Length = 1287

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 78  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 137

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 138 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 166


>gi|83720672|ref|YP_441847.1| DNA repair protein RecN [Burkholderia thailandensis E264]
 gi|167618784|ref|ZP_02387415.1| DNA repair protein RecN [Burkholderia thailandensis Bt4]
 gi|257138016|ref|ZP_05586278.1| DNA repair protein RecN [Burkholderia thailandensis E264]
 gi|83654497|gb|ABC38560.1| DNA repair protein RecN [Burkholderia thailandensis E264]
          Length = 549

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 94/256 (36%), Gaps = 40/256 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            GS                  ++     AD ++ L    D + R    IN     +  + 
Sbjct: 57  TGSGRADISAEFTPHDRVARWLDEHAFDADDTVMLRRVVDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRF-----LDRMVFAIDPRHRRRMIDFERLMRGR 169
           E+ + L +        ++      +R  F     L     A+   + R   D    +   
Sbjct: 117 EVGEML-VDIHGQHAHQLLMRADAQRELFDTHAGLAADAAAVTRGY-RAWRDATHAIDAA 174

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
                E   +      +  Q+AEL            + L+    E+  + +  H +L+ +
Sbjct: 175 QAHERERQLER---EKLAWQLAEL------------DKLAPQPGEW-DEISAEHKRLTHS 218

Query: 230 GFLDGKFDQSFCALKE 245
             L      +  A+ E
Sbjct: 219 ANLIDGVQGALNAISE 234


>gi|37521496|ref|NP_924873.1| hypothetical protein glr1927 [Gloeobacter violaceus PCC 7421]
 gi|35212493|dbj|BAC89868.1| glr1927 [Gloeobacter violaceus PCC 7421]
          Length = 381

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +    + +  +RN+ +  +    +    VG N  GK+N L+   FL
Sbjct: 1  MFASRIVLKNWRNFRAADVQLTDRV-FVVGPNASGKSNFLDVFRFL 45


>gi|13476986|ref|NP_108556.1| ABC transporter, ATP-binding protein [Mesorhizobium loti
          MAFF303099]
 gi|14027749|dbj|BAB54342.1| ABC transporter, ATP-binding protein [Mesorhizobium loti
          MAFF303099]
          Length = 258

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          FR      L F A  TI VG+NG GK+ +LEAI  L+
Sbjct: 38 FRG-REFELEFTAPITIIVGENGTGKSTLLEAIGALA 73


>gi|294673573|ref|YP_003574189.1| DNA repair protein RecN [Prevotella ruminicola 23]
 gi|294473132|gb|ADE82521.1| DNA repair protein RecN [Prevotella ruminicola 23]
          Length = 552

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 75/261 (28%), Gaps = 49/261 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I  F     L +      ++  G+ G GK+ IL AI+ L   R     + +   +
Sbjct: 2   LKHLYIKNFTLIDELDISLYEGFSVITGETGAGKSIILGAIALLLGQR-----ADSKTIK 56

Query: 67  IGSPSFFST-------------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV- 112
            G+                   F   +      D  I+ E       R   IND  + + 
Sbjct: 57  QGAEKCVIEAHFDLSRYNMQAFFDENDIEYDADDCIIRRELTAAGKSRAF-INDTPVALS 115

Query: 113 -VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL   L           +               V  I      ++  +++       
Sbjct: 116 MLKELGDQLMDVHSQHQNLLLNKQD-------FQLEVVDIIADDAAQLTKYQQT------ 162

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
                    +   + E ++AEL   I   R       +   +++ Q E   +  L     
Sbjct: 163 --------YTAYQAAEKELAELQAAIERNRE------NRDFLQF-QYEELENAHLVEGEQ 207

Query: 232 LDGKFDQSFCALKEEYAKKLF 252
            + +         E+    L+
Sbjct: 208 EELEQRSDTMEHSEDIKSALY 228


>gi|282882590|ref|ZP_06291209.1| ATP-dependent OLD family endonuclease [Peptoniphilus lacrimalis
           315-B]
 gi|281297565|gb|EFA90042.1| ATP-dependent OLD family endonuclease [Peptoniphilus lacrimalis
           315-B]
          Length = 656

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 63/423 (14%), Positives = 141/423 (33%), Gaps = 82/423 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-------- 56
           +++  + I  +R      L  DA+ T+ VG N   KT+    I+ +  G  F        
Sbjct: 1   MRLSKIKIKNYRLLIDAELDIDAKTTLIVGRNNTAKTSCSNCINTVLQGNDFSYNDYPIS 60

Query: 57  --------------RRASYADVTRIGSP---SFFSTFARVEGMEGL-------ADISIKL 92
                         ++ SY D+ R   P    F   ++  +    L        D+ +  
Sbjct: 61  KRENLYNLFFQFMEKKLSYEDLCRGIEPISIEFVVDYSLDDQDTKLGALSPFIIDVDVDT 120

Query: 93  ETRDDRSVRCLQINDVVIRVVDELNKHLRISW--LVPSMDRIFSGLSMERRRFLDRMVFA 150
            T   R+   L+I++  +R   EL K    S     P  + + + L+    R    +++A
Sbjct: 121 TTALIRAEYQLKIDESKLR---ELFKDSCYSNDKFAPKAEEMHAKLASNFSRLFGLIIYA 177

Query: 151 IDPRHRRRMI------------DF----ERLM----RGRNRLLTEGYFDSSWCSSIEAQM 190
           ++P++                  +    ER++      +N  L+    D    +  E  +
Sbjct: 178 VNPKNLEDWQVKSHRELKDLFPYYPIPAERILGEDGTQKNESLSSLIADYFSLN--EEDL 235

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
                +       +++  +  + +   +         L+  +       +  ++E     
Sbjct: 236 TPDIAEKVKELRAVVDGANKNVQKESDRI--------LSDLVSKAVGFGYPNVEELQLGV 287

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
             + +  D +  +T +            D+++  +H   G + ++ +   LA        
Sbjct: 288 TTELKIDDQIKNQTRLSYSS-----GASDESLPSSHNGLGYKNLIKMEFLLAAFARDVEK 342

Query: 311 TGFAPI--LLLDEISAHLDED-------KRNALFRIVTDIGSQIFMTGTDKSVFDSLNET 361
            G A I  L ++E  +H+                  +T +  Q F+T T  +   +  + 
Sbjct: 343 KGDACIPLLFIEEPESHMHPQMQHAFAEHLEKFLDKITTVHIQTFLT-THSAHIANTMDF 401

Query: 362 AKF 364
           +K 
Sbjct: 402 SKI 404


>gi|255587856|ref|XP_002534418.1| Structural maintenance of chromosome, putative [Ricinus communis]
 gi|223525329|gb|EEF27966.1| Structural maintenance of chromosome, putative [Ricinus communis]
          Length = 1259

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 2  TNRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFR 57
            R+ IK + +  F++Y        F    +  VG NG GK+N+++A+ F+     +  R
Sbjct: 23 PPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMR 82

Query: 58 RASYADVTR 66
              +++  
Sbjct: 83 LNKVSELIH 91


>gi|220916213|ref|YP_002491517.1| SMC domain protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954067|gb|ACL64451.1| SMC domain protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 808

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 6  KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++K L+I  FR +     +  DA   +  G NG GK+++L AI F   G
Sbjct: 4  RLKRLSIKGFRRFEVEATVPLDADVILVHGPNGTGKSSVLNAIEFGLTG 52


>gi|166365757|ref|YP_001658030.1| hypothetical protein MAE_30160 [Microcystis aeruginosa NIES-843]
 gi|166088130|dbj|BAG02838.1| hypothetical protein MAE_30160 [Microcystis aeruginosa NIES-843]
          Length = 475

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 58/136 (42%), Gaps = 13/136 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--------PGRGFRR 58
           I ++ I  F+++ +  +VF    T+  G N  GK+N+ +A+  L+             +R
Sbjct: 2   ITYIKIHGFKSFHNFEMVFTP-LTVVAGVNASGKSNLFDALQLLARLAEVDLKTAFSEQR 60

Query: 59  ASYADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-DVVIRVVDEL 116
              +++ T+     + +    +  +E L +  +K     +  ++  ++   + I+    +
Sbjct: 61  GHPSELFTQYDEDDYATEMEFI--VEMLVNRKVKDNWGGEVDLKYTRLRYQLKIKRESNI 118

Query: 117 NKHLRISWLVPSMDRI 132
           +    +  +  S++ +
Sbjct: 119 SGFENLYIVYESLENL 134


>gi|71030162|ref|XP_764723.1| RAD50 DNA repair protein [Theileria parva strain Muguga]
 gi|68351679|gb|EAN32440.1| RAD50 DNA repair protein, putative [Theileria parva]
          Length = 1002

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRN---YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  L I   R+   Y +  L F+   T+ VG NG GKT ++E++  ++ G
Sbjct: 4  INSLEIRGIRSFTPYRTEFLEFEKPLTLIVGKNGSGKTTLVESLKAVTSG 53


>gi|332214598|ref|XP_003256422.1| PREDICTED: structural maintenance of chromosomes protein 4 isoform
           3 [Nomascus leucogenys]
          Length = 1262

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 53  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 112

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 113 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 141


>gi|296227682|ref|XP_002759475.1| PREDICTED: structural maintenance of chromosomes protein 4 isoform
           1 [Callithrix jacchus]
 gi|296227684|ref|XP_002759476.1| PREDICTED: structural maintenance of chromosomes protein 4 isoform
           2 [Callithrix jacchus]
          Length = 1287

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 78  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 137

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 138 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 166


>gi|6807671|emb|CAB66811.1| hypothetical protein [Homo sapiens]
          Length = 1288

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|22126951|ref|NP_670374.1| recombination and repair protein [Yersinia pestis KIM 10]
 gi|45440885|ref|NP_992424.1| recombination and repair protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|21959992|gb|AAM86625.1|AE013908_8 DNA repair protein [Yersinia pestis KIM 10]
 gi|45435743|gb|AAS61301.1| DNA repair protein RecN [Yersinia pestis biovar Microtus str.
           91001]
          Length = 589

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 83/277 (29%), Gaps = 34/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 38  LVQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAVDALGLCLGNRS-----DGSMVR 92

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E      +    L        R    IN   V +  
Sbjct: 93  LGATRADICARFSLADTPSARQWLENNHLDDNNECLLRRAIGADGRSRGFINGTPVPVSQ 152

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMI 160
           + EL +HL       +   +       +++ LD            +  + I  +  R + 
Sbjct: 153 LRELGQHLIQIHGQHAHQLLLK--PDHQKQLLDAYANQSSLLAEMKAAYQIWHQSCRDLA 210

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKE 219
             ++    R        +     +S   Q  E   + I   R+     L SL  + +Q  
Sbjct: 211 LHQQQSLERTARQELLQYQLKELNSFSPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL 270

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +       L+     K   +  A  +E    L +  +
Sbjct: 271 SDDEQNNILSQLYAAKHQLTELASMDEQFNNLLNMLE 307


>gi|268531906|ref|XP_002631081.1| Hypothetical protein CBG02854 [Caenorhabditis briggsae]
          Length = 1131

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQ-HTIFV--GDNGVGKTNILEAISFLSPGRGF---RRA 59
          ++  + +  F  +A+L++ F+ + +  F   G NG GK+ +  AI+    GRG    R +
Sbjct: 28 RVASVKLQNFMCHANLQIDFNTKQNNCFYIGGPNGSGKSALFAAINLGLGGRGSDNDRGS 87

Query: 60 SYADVTRIGSPS 71
          +     + G+P 
Sbjct: 88 TVKSYIKDGTPQ 99


>gi|50658063|ref|NP_001002800.1| structural maintenance of chromosomes protein 4 [Homo sapiens]
 gi|50658065|ref|NP_005487.3| structural maintenance of chromosomes protein 4 [Homo sapiens]
 gi|30173386|sp|Q9NTJ3|SMC4_HUMAN RecName: Full=Structural maintenance of chromosomes protein 4;
           Short=SMC protein 4; Short=SMC-4; AltName:
           Full=Chromosome-associated polypeptide C; Short=hCAP-C;
           AltName: Full=XCAP-C homolog
 gi|4092846|dbj|BAA73535.1| chromosome-associated polypeptide-C [Homo sapiens]
 gi|119599045|gb|EAW78639.1| SMC4 structural maintenance of chromosomes 4-like 1 (yeast),
           isoform CRA_a [Homo sapiens]
 gi|119599046|gb|EAW78640.1| SMC4 structural maintenance of chromosomes 4-like 1 (yeast),
           isoform CRA_a [Homo sapiens]
 gi|148922377|gb|AAI46371.1| Structural maintenance of chromosomes 4 [synthetic construct]
 gi|151556600|gb|AAI48797.1| Structural maintenance of chromosomes 4 [synthetic construct]
 gi|261857726|dbj|BAI45385.1| structural maintenance of chromosomes 4 [synthetic construct]
          Length = 1288

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|6323115|ref|NP_013187.1| Smc4p [Saccharomyces cerevisiae S288c]
 gi|29427672|sp|Q12267|SMC4_YEAST RecName: Full=Structural maintenance of chromosomes protein 4
 gi|1256888|gb|AAB67590.1| Ylr086wp [Saccharomyces cerevisiae]
 gi|1360455|emb|CAA97646.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285813506|tpg|DAA09402.1| TPA: Smc4p [Saccharomyces cerevisiae S288c]
          Length = 1418

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
            +R+ I  L +  F++YA  ++   F    +  VG NG GK+N+++++ F+   R    R
Sbjct: 151 QSRLFINELVLENFKSYAGKQVVGPFHTSFSAVVGPNGSGKSNVIDSMLFVFGFRANKMR 210

Query: 58  RASYADVTR 66
           +   +D+  
Sbjct: 211 QDRLSDLIH 219


>gi|296393104|ref|YP_003657988.1| hypothetical protein Srot_0675 [Segniliparus rotundus DSM 44985]
 gi|296180251|gb|ADG97157.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985]
          Length = 811

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYA 62
          +++  L +S +R      +VF A   T+  G N  GK++++EA+  L   +   +     
Sbjct: 1  MRLHRLVLSHYRGVRHREVVFAAQGATVVEGPNEAGKSSMVEALDLLFEVKDSSKTKQLR 60

Query: 63 DVTRIGSPSFFSTFARVE 80
           +   G+ +     A V+
Sbjct: 61 AIAPKGADAAPFVEAEVQ 78


>gi|289643927|ref|ZP_06476030.1| DNA repair protein RecN [Frankia symbiont of Datisca glomerata]
 gi|289506256|gb|EFD27252.1| DNA repair protein RecN [Frankia symbiont of Datisca glomerata]
          Length = 581

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   ++I+ L + +        L      T+  G+ G GKT I++ +  L+ GR     +
Sbjct: 1  MLEEVRIRGLGVID-----DAVLELAPGLTVVSGETGAGKTMIVQGLGLLTGGR-----A 50

Query: 61 YADVTRIGSPSFFSTFARVEGMEG 84
           A + R G+   F     +   +G
Sbjct: 51 DAGLVRPGAVRAFVDGRLIVSPDG 74


>gi|193212829|ref|YP_001998782.1| ABC transporter related [Chlorobaculum parvum NCIB 8327]
 gi|193086306|gb|ACF11582.1| ABC transporter related [Chlorobaculum parvum NCIB 8327]
          Length = 429

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 11/123 (8%)

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDS-MSRRTLIGPHRSDLIVDYCD- 279
           P  + SL G +  K D        E      + R   + +  R      ++ +  +  D 
Sbjct: 80  PRERASLIGVVPQKLDSPMAFTVGEIVMLGRNLRGRWTGLEGRDYDSVEKAMIYTNVFDM 139

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           K       S GEQ+   + + LA             I++LDE  AHLD +    + RI+ 
Sbjct: 140 KERRFNELSAGEQQRTALAMALAQ---------EPRIIMLDESIAHLDINHSQEVLRILM 190

Query: 340 DIG 342
           +I 
Sbjct: 191 NIN 193


>gi|170285184|gb|AAI60994.1| LOC100145425 protein [Xenopus (Silurana) tropicalis]
          Length = 911

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 8  KFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYADV 64
          K L I  F+++     +    +    +G NG GK+N+++A SF+   +    R  +   +
Sbjct: 5  KQLIIENFKSWGGRQVIGPFLRFNCVIGPNGSGKSNLMDAFSFVMGEKPANLRVRNIRQL 64

Query: 65 TR 66
            
Sbjct: 65 IH 66


>gi|156089429|ref|XP_001612121.1| hypothetical protein [Babesia bovis T2Bo]
 gi|154799375|gb|EDO08553.1| conserved hypothetical protein [Babesia bovis]
          Length = 1121

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 7  IKFLNISEFRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K L I   R ++   +  + F+   T+ VG NG GKT I+E +
Sbjct: 4  LKSLQIQGIRCFSPNNAQSIEFEKPLTLIVGPNGAGKTTIMECL 47


>gi|114107981|gb|AAI23313.1| Unknown (protein for IMAGE:8329210) [Xenopus laevis]
          Length = 417

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  R+   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 73  APRLMITHIVNQNFKSYAGERILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 132

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 133 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 161


>gi|46981263|gb|AAT07581.1| putative SMC protein [Oryza sativa Japonica Group]
 gi|218197032|gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group]
 gi|222632094|gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group]
          Length = 1241

 Score = 45.3 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 3  NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
           R+ IK + +  F++YA   R+  F    +  VG NG GK+N+++A+ F+     +  R 
Sbjct: 19 PRLFIKEMVLRNFKSYAGEQRIGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRL 78

Query: 59 ASYADVTRIGSPS 71
             +++    S  
Sbjct: 79 NKVSELIHNSSNH 91


>gi|302531848|ref|ZP_07284190.1| SMC domain-containing protein [Streptomyces sp. AA4]
 gi|302440743|gb|EFL12559.1| SMC domain-containing protein [Streptomyces sp. AA4]
          Length = 259

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 14/61 (22%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLS------PGRGFRRAS--------YADVTRIG 68
           L  D   T  VGDNG GK+ ++EAI+  +        + FR A+           V R G
Sbjct: 45  LDLDPGVTFLVGDNGTGKSTLVEAIAVAAGFNPEGGSQSFRFATRATESSLGDRLVLRWG 104

Query: 69  S 69
           +
Sbjct: 105 A 105


>gi|300772576|ref|ZP_07082446.1| DNA repair protein RecN [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760879|gb|EFK57705.1| DNA repair protein RecN [Sphingobacterium spiritivorum ATCC 33861]
          Length = 553

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 10/115 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP----GRGFRRASYA 62
           +  L I  +    +L + FD    I  G+ G GK+ I+ A+S +      G+ F      
Sbjct: 2   LSRLYIRNYALIDTLDISFDKGLNIITGETGAGKSIIMGALSLILGSRIEGKYFFNQDQK 61

Query: 63  DVT----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            +      IG+     +F     M+   +  I+ E   D   R   IND  + + 
Sbjct: 62  CIIEGYFNIGA-YHLQSFFDEHDMDYETETIIRREISVDGKSRAF-INDSPVNLA 114


>gi|256391659|ref|YP_003113223.1| hypothetical protein Caci_2464 [Catenulispora acidiphila DSM
          44928]
 gi|256357885|gb|ACU71382.1| hypothetical protein Caci_2464 [Catenulispora acidiphila DSM
          44928]
          Length = 1051

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFL 50
          +++  + ++ FR  A   L F     T+  G N  GK++ +EA   L
Sbjct: 1  MRLLRIRLTNFRGVADRELTFAEHGVTVVEGPNESGKSSTIEAFGLL 47


>gi|281421725|ref|ZP_06252724.1| putative DNA sulfur modification protein DndD [Prevotella copri
          DSM 18205]
 gi|281404220|gb|EFB34900.1| putative DNA sulfur modification protein DndD [Prevotella copri
          DSM 18205]
          Length = 666

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVF----DAQHTIFVGDNGVGKTNILEAIS 48
          + IK + I  ++ Y SL L      D    +  G NG GKT + EAI 
Sbjct: 1  MIIKRIKIKNYKTYLSLDLDLSVNPDQPIILIGGMNGGGKTTLFEAIC 48


>gi|88810626|ref|ZP_01125883.1| hypothetical protein NB231_16138 [Nitrococcus mobilis Nb-231]
 gi|88792256|gb|EAR23366.1| hypothetical protein NB231_16138 [Nitrococcus mobilis Nb-231]
          Length = 1170

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          +++  + ++ F+++     +         VG NG GK+NI++A+ ++         R  S
Sbjct: 1  MRLNKIKLAGFKSFVEPTTVSLPGSIVGVVGPNGCGKSNIIDAVRWVMGESSPRYLRGES 60

Query: 61 YADVTRIGSPS 71
           ADV   GS +
Sbjct: 61 MADVIFNGSDA 71



 Score = 37.2 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 64/201 (31%), Gaps = 34/201 (16%)

Query: 176  GYFDSSWCSSIEAQMAELGVKINIAR-VEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
            GY   S  + +  ++ E      ++R  E I  L  + +  + +      + +       
Sbjct: 934  GYEPESVVAKLNPELNEAACAQELSRLQEQIARLEPVNLAAIDECRDLEERKAYIEGQHA 993

Query: 235  KFDQSFCALKEEYAKKLFDGRKM--------DSMSRR---TLIGPHRSDLIVDYCD---- 279
                +   L++       + R+         D   R     L G  ++ L +   D    
Sbjct: 994  DLTVALKTLEDAIRHIDQETRRRFKETFEQVDQRLRALFPRLFGGGQAHLELTGEDLLEA 1053

Query: 280  -----------KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
                       K  ++   S+GE+ +  V +  A   L       AP  +LDE+ A LDE
Sbjct: 1054 AITIMARPPGKKITSLHLLSSGEKALTAVSLIFALFEL-----NPAPFCMLDEVDAPLDE 1108

Query: 329  DKRNALFRIV--TDIGSQIFM 347
                    ++       Q  M
Sbjct: 1109 ANVGRFCDLLREQSARVQFIM 1129


>gi|326329282|ref|ZP_08195607.1| antibiotic ABC transporter [Nocardioidaceae bacterium Broad-1]
 gi|325952857|gb|EGD44872.1| antibiotic ABC transporter [Nocardioidaceae bacterium Broad-1]
          Length = 542

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 55/139 (39%), Gaps = 11/139 (7%)

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           P  +++L G  +  +     A  E YA+          +S R L+    + L +D   + 
Sbjct: 407 PGARVALVGQEEPAWAPGLTA-AEVYAQHCGRLVAAGVVSERALVSLRSTGL-MDAEARR 464

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
              +  S G+Q+ + + + LA             +L+LDE + HL     + L   +   
Sbjct: 465 TPASRLSQGQQRRLELALRLAS---------RPHLLILDEPTNHLSAGLVDELTAALRAT 515

Query: 342 GSQIFMTGTDKSVFDSLNE 360
            + + +   D+ +   L++
Sbjct: 516 PAAVVVATHDRQMLRDLSD 534


>gi|316997287|dbj|BAJ52740.1| hypothetical protein [Campylobacter lari]
          Length = 350

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          I  + I  F+    L+L   ++   FVG    GKT+ILEA+ 
Sbjct: 2  IDSIEIKNFKGIKELKLENFSKVNFFVGRANTGKTSILEALF 43


>gi|217326827|ref|ZP_03442910.1| DNA repair protein RecN [Escherichia coli O157:H7 str. TW14588]
 gi|217319194|gb|EEC27619.1| DNA repair protein RecN [Escherichia coli O157:H7 str. TW14588]
          Length = 522

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|167377212|ref|XP_001734316.1| DNA double-strand break repair Rad50 ATPase [Entamoeba dispar
          SAW760]
 gi|165904230|gb|EDR29530.1| DNA double-strand break repair Rad50 ATPase, putative [Entamoeba
          dispar SAW760]
          Length = 505

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 9  FLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
           L I+  R+      + + F    T+  G NG GKT I+E++ +   G  
Sbjct: 6  KLEIAGIRSINPDKPVEIEFFKPLTLITGPNGAGKTTIIESVRYACTGTS 55


>gi|162449337|ref|YP_001611704.1| recombination protein N [Sorangium cellulosum 'So ce 56']
 gi|161159919|emb|CAN91224.1| recombination protein N [Sorangium cellulosum 'So ce 56']
          Length = 565

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 43/269 (15%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           L +  F    +L L  +    +  G+ G GK+ ++ A+S +  GR     + A+  R G+
Sbjct: 5   LRVKNFILMDALELRLEPGFNVLTGETGAGKSIVVGALSLVLGGR-----ASAEQVRPGA 59

Query: 70  PSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI----SW 124
                     V G +    +        +  +   ++     R    LN  L        
Sbjct: 60  DEAEIEALFDVRGSDRAMAMLDAAGIASEGELVVRRVVQATGRSRAYLNGRLCTAGELQA 119

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPR-HRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
           L P +  + S             V   DP  H   +  F RL+  R+ L      D S  
Sbjct: 120 LAPELADVASQ---------HESVALTDPSTHLGYLDRFGRLVPARSEL----AADVSAL 166

Query: 184 SSIEAQMAELGVKINIAR----------VEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
            ++ A++     ++   R          ++ I+ALS    E +        +L   G L 
Sbjct: 167 EALTAEL-RAARELERGRGEREAFLSFQLQAIDALSPRPGE-LADLAAERNRLRHAGRLH 224

Query: 234 -------GKFDQSFCALKEEYAKKLFDGR 255
                   + DQ   A+ +E A+   + R
Sbjct: 225 DITRRAASRLDQGDDAMCDELARLASELR 253


>gi|67920871|ref|ZP_00514390.1| hypothetical protein CwatDRAFT_5352 [Crocosphaera watsonii WH
          8501]
 gi|67856988|gb|EAM52228.1| hypothetical protein CwatDRAFT_5352 [Crocosphaera watsonii WH
          8501]
          Length = 442

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQH---TIFVG-DNGVGKTNILEAISFLSPG 53
          +K+  +++  FRN  ++ L F+         +G +NG GK+ +L+ I  L   
Sbjct: 1  MKLLKVSVPNFRNLKNVELTFEPSLKPAVFPIGSENGGGKSTLLQLIFVLLTC 53


>gi|319405997|emb|CBI79628.1| DNA repair protein RecN [Bartonella sp. AR 15-3]
          Length = 555

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 8/144 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I        L + F    ++  G+ G GK+ +L+++S    GRG      + + R
Sbjct: 2   LVQLSIHNIVLIEKLDIHFTKGLSVLTGETGTGKSILLDSLSLALGGRG-----DSSLVR 56

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G +    +    V     +  +  +    DD  +   ++     R    LN  +    L
Sbjct: 57  HGMTQGQVTAIFNVPVSHPVRQLIYENGLDDDGDIILRRVQSSDGRSRGFLNDQVISVAL 116

Query: 126 VPSMDRIFSG--LSMERRRFLDRM 147
           + S+ R+        + R F+D  
Sbjct: 117 MRSIGRMLVEIHGQHDDRAFVDIG 140


>gi|312262447|gb|ADQ52742.1| gp46 recombination endonuclease subunit [Aeromonas phage PX29]
          Length = 772

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 4/84 (4%)

Query: 28  QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLAD 87
           + T+  G NG GK+  +EA++FL  G+ FR  + A +    +         +   +    
Sbjct: 29  KKTLVTGTNGAGKSTFIEALTFLLYGKAFRDITKAQLVNSQNKKGLFVEGELSVGKDRYH 88

Query: 88  ISIKLETRDDRSVRCLQINDVVIR 111
           I   ++      V  +Q N V ++
Sbjct: 89  IERGIKPN----VLKIQKNGVPLK 108


>gi|301644058|ref|ZP_07244074.1| DNA repair protein RecN [Escherichia coli MS 146-1]
 gi|301077603|gb|EFK92409.1| DNA repair protein RecN [Escherichia coli MS 146-1]
          Length = 553

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 83/240 (34%), Gaps = 32/240 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       ++  LD         +       +  M  R +L
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTK--PEHQKFLLD--------GYANETSLLQE-MTARYQL 165

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             +   D +    +  + A    ++   +++ +N  +    E+ ++ +  + +L+ +G L
Sbjct: 166 WHQSCRDLAHHQQLSQEHA-ARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQL 223


>gi|197284580|ref|YP_002150452.1| hypothetical protein PMI0685 [Proteus mirabilis HI4320]
 gi|227356762|ref|ZP_03841147.1| OLD family ATP-dependent endonuclease [Proteus mirabilis ATCC
          29906]
 gi|194682067|emb|CAR41598.1| conserved hypothetical protein [Proteus mirabilis HI4320]
 gi|227163052|gb|EEI47987.1| OLD family ATP-dependent endonuclease [Proteus mirabilis ATCC
          29906]
          Length = 557

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + ++ + I+ FR    L L  D   T+ VG+N  GKT++L+A++ 
Sbjct: 1  MYLERVEIAGFRGLNRLSLPLDMN-TVLVGENAWGKTSLLDALTL 44


>gi|167580679|ref|ZP_02373553.1| DNA repair protein RecN [Burkholderia thailandensis TXDOH]
          Length = 549

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 94/256 (36%), Gaps = 40/256 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67  IGSPS---------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVD 114
            GS                  ++     AD ++ L    D + R    IN     +  + 
Sbjct: 57  TGSGRADISAEFTPHDRVARWLDEHAFDADDTVMLRRVVDANGRSRAFINGTSATLAQLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRF-----LDRMVFAIDPRHRRRMIDFERLMRGR 169
           E+ + L +        ++      +R  F     L     A+   + R   D    +   
Sbjct: 117 EVGEML-VDIHGQHAHQLLMRADAQRELFDTHAGLAADAAAVTRGY-RAWRDATHAIDAA 174

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
                E   +      +  Q+AEL            + L+    E+  + +  H +L+ +
Sbjct: 175 QAHERERQLER---EKLAWQLAEL------------DKLAPQPGEW-DEISAEHKRLTHS 218

Query: 230 GFLDGKFDQSFCALKE 245
             L      +  A+ E
Sbjct: 219 ANLIDGVQGALNAISE 234


>gi|160942646|ref|ZP_02089890.1| hypothetical protein FAEPRAM212_00119 [Faecalibacterium
          prausnitzii M21/2]
 gi|158446061|gb|EDP23064.1| hypothetical protein FAEPRAM212_00119 [Faecalibacterium
          prausnitzii M21/2]
 gi|295103816|emb|CBL01360.1| hypothetical protein [Faecalibacterium prausnitzii SL3/3]
          Length = 447

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTI------FVGDNGVGKTNILEAISFL 50
            + +  FR++  +      +  +        G+NG GK+N++ A   L
Sbjct: 3  TKITLENFRSFDHIVFDLTEKGNVPKHLAVLYGENGAGKSNLMSAFVLL 51


>gi|330686009|gb|EGG97632.1| DNA repair protein RecN [Staphylococcus epidermidis VCU121]
          Length = 558

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIDELEIQFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--YVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAI 63


>gi|331648358|ref|ZP_08349446.1| DNA repair protein RecN [Escherichia coli M605]
 gi|330912377|gb|EGH40887.1| DNA repair protein RecN [Escherichia coli AA86]
 gi|331042105|gb|EGI14247.1| DNA repair protein RecN [Escherichia coli M605]
          Length = 553

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|260777651|ref|ZP_05886544.1| ATP-dependent endonuclease [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605664|gb|EEX31949.1| ATP-dependent endonuclease [Vibrio coralliilyticus ATCC BAA-450]
          Length = 543

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + ++ + IS FR    L + FD   T  +G+N  GK+++L+A+S 
Sbjct: 1  MLLERIEISGFRGIKRLSIAFDE-LTTLIGENTWGKSSLLDALSV 44


>gi|238022149|ref|ZP_04602575.1| hypothetical protein GCWU000324_02055 [Kingella oralis ATCC
          51147]
 gi|237866763|gb|EEP67805.1| hypothetical protein GCWU000324_02055 [Kingella oralis ATCC
          51147]
          Length = 1160

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + ++ F++      +   +Q    +G NG GK+N+++A+ ++   S  +  R  S
Sbjct: 1  MRLTQIKLAGFKSFIDPTTIHVPSQLVAVIGPNGCGKSNVIDAVRWVLGESSAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVISNGAA 70



 Score = 37.6 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 277  YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
               K  +I   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +   +
Sbjct: 1051 IGKKNSSIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCQ 1105

Query: 337  IVTDIGSQI 345
            +V ++ +Q 
Sbjct: 1106 LVKEMAAQT 1114


>gi|220915711|ref|YP_002491015.1| hypothetical protein A2cp1_0592 [Anaeromyxobacter dehalogenans
          2CP-1]
 gi|219953565|gb|ACL63949.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
          2CP-1]
          Length = 361

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASYA 62
          +  ++I  FR+  ++RL      T+ +G NG GKTN+ +A+  L   + G   R  + +
Sbjct: 2  LTDIHIEGFRSVRAVRLRLAP-VTVVLGANGTGKTNLYQALRLLKAAASGTLARTVADS 59


>gi|126179563|ref|YP_001047528.1| SMC domain-containing protein [Methanoculleus marisnigri JR1]
 gi|125862357|gb|ABN57546.1| SMC domain protein [Methanoculleus marisnigri JR1]
          Length = 1057

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +  L +  F+ +    +VF    T  VG+NG GK++I+ A+ F   G
Sbjct: 1  MLLNKLWMRNFKRFRDQEIVFQDGITGIVGNNGTGKSSIVSAVLFALYG 49



 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 96/322 (29%), Gaps = 31/322 (9%)

Query: 53   GRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G   R    A+  +             +     ++   + +T   R+   L++    +  
Sbjct: 742  GISARVNGLAERLQAIQAELIRLAFDPDRFARQSEECNRADTAHRRAF-ELRVRLEAVPR 800

Query: 113  VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
            + E  +  +        +R+  G +++   F +  V A + R      D       R+ +
Sbjct: 801  LIEALEAKQTLLANREAERLRVGEAVKELGFTEETVTAAEERVANCERDLAAAREQRSAV 860

Query: 173  LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                            +++     +   R  +   +                +L LT  L
Sbjct: 861  AFRINSLKMDIEKETGRLSR-AADLVRHRETLTEEIG---------------RLKLTRSL 904

Query: 233  DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI--TIAHGSTG 290
              ++      +  +  ++       +    R        D  V   D          S G
Sbjct: 905  IKEYTDYLLQVVRDRIEEEAGWVLAEITDGRYGTVMLDDDFTVLVHDMGDDYPADRFSGG 964

Query: 291  EQKVVLVGIFLAHARLISN--TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            EQ  + + + +A +R ++       +  L+ DEI    DE +RN L R +          
Sbjct: 965  EQDDIAIALRVALSRFLAEVNEVHDSTFLIFDEIFGSQDEGRRNNLLRALR--------- 1015

Query: 349  GTDKSVFDSLNETAKFMRISNH 370
             T ++ F  +   +    + + 
Sbjct: 1016 -TQEAHFPQILLISHITEVQDE 1036


>gi|50745053|ref|XP_419962.1| PREDICTED: hypothetical protein [Gallus gallus]
          Length = 1096

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 23/150 (15%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     +G+NG GK+++L A+     G+     R +S  
Sbjct: 56  IESIQLKNFMCHSMLGPFQFGSNLNFIIGNNGSGKSSVLTALIVGLGGKATATNRGSSLK 115

Query: 63  DVTRIGSPSF-FSTFARVEGME--------GLADISIKLETRDDRSVRCLQINDVVI-RV 112
              + G  S   S   + +G +            ++  +     R+ R    +  +I   
Sbjct: 116 MFVKSGETSADISVTLQNQGRDAFKPELYGDSIIVNTHINLEGSRTYRLKSKSGAIISSK 175

Query: 113 VDELNKHL---------RISWLVPSMDRIF 133
            +EL   L          +S L   M ++F
Sbjct: 176 KEELLGMLDHFNIQVENPVSVLTQEMSKLF 205


>gi|332214594|ref|XP_003256420.1| PREDICTED: structural maintenance of chromosomes protein 4 isoform
           1 [Nomascus leucogenys]
 gi|332214596|ref|XP_003256421.1| PREDICTED: structural maintenance of chromosomes protein 4 isoform
           2 [Nomascus leucogenys]
          Length = 1287

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 78  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 137

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 138 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 166


>gi|302389772|ref|YP_003825593.1| SMC domain protein [Thermosediminibacter oceani DSM 16646]
 gi|302200400|gb|ADL07970.1| SMC domain protein [Thermosediminibacter oceani DSM 16646]
          Length = 483

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           IK + +  F+++    + FD   T+ +G    GK+ I+ A+ ++            D   
Sbjct: 4   IKKIRLENFQSHKDTEITFDEGLTVILGPTDQGKSAIIRALKWVLYNE----PRGTDFIS 59

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           +GS         VE  +G     I  E  ++++   L+ +    
Sbjct: 60  VGSNFC---RVSVEMDDGTV---IIRERGNNKNRYILRKDGKEQ 97


>gi|271966292|ref|YP_003340488.1| ABC transporter [Streptosporangium roseum DSM 43021]
 gi|270509467|gb|ACZ87745.1| ABC transporter related protein [Streptosporangium roseum DSM
           43021]
          Length = 566

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
            +   S G+Q+ + + + LA         G   ++LLDE + HL     + L   + D  
Sbjct: 474 PVGRMSQGQQRRLDLALALA---------GRPGLILLDEPTNHLSSALVDELTDAIRDTS 524

Query: 343 SQIFMTGTDKSVFDSLNE 360
           + + +   D+ +   L +
Sbjct: 525 AAVVVATHDRQLLRDLAD 542


>gi|24415998|ref|NP_079971.2| structural maintenance of chromosomes protein 6 [Mus musculus]
 gi|81879970|sp|Q924W5|SMC6_MOUSE RecName: Full=Structural maintenance of chromosomes protein 6;
           Short=SMC protein 6; Short=SMC-6; Short=mSMC6
 gi|14250922|emb|CAC39250.1| SMC6 protein [Mus musculus]
 gi|60334826|gb|AAH90630.1| Structural maintenance of chromosomes 6 [Mus musculus]
 gi|148666017|gb|EDK98433.1| structural maintenance of chromosomes 6 [Mus musculus]
          Length = 1097

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 54  IESIQLRNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLK 113

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
              + G  S              ADISI L  R D + R     D ++
Sbjct: 114 GFVKAGQNS--------------ADISITLRNRGDDAFRANVYGDSIV 147


>gi|325115486|emb|CBZ51041.1| xenopus 14s cohesin smc1 subunit, related [Neospora caninum
           Liverpool]
          Length = 1652

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 3   NRIKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRA 59
            R++++++ +  F++Y     +         +G NG GK+N+ +AI F      +  R +
Sbjct: 234 GRLRLRWVVLENFKSYKGTHVIGPLYGSVAVIGPNGAGKSNLTDAICFALGVNAKQLRCS 293

Query: 60  SYADVTR 66
              ++  
Sbjct: 294 RLVELIH 300


>gi|302876315|ref|YP_003844948.1| AAA ATPase [Clostridium cellulovorans 743B]
 gi|307687050|ref|ZP_07629496.1| AAA ATPase [Clostridium cellulovorans 743B]
 gi|302579172|gb|ADL53184.1| AAA ATPase [Clostridium cellulovorans 743B]
          Length = 251

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          I   +N     L F  + T  VG+NG GK+ ILEAI+ 
Sbjct: 33 IINLKN-----LEFHPKVTFIVGENGSGKSTILEAIAV 65


>gi|167465102|ref|ZP_02330191.1| hypothetical protein Plarl_21506 [Paenibacillus larvae subsp.
          larvae BRL-230010]
          Length = 125

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 6  KIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          KI  L I   +   ++++    +  T+  G N  GKT++L+AI++   G  +R +    
Sbjct: 3  KINKLEIENVKRVKAVKIEPTTSGLTVVGGKNNQGKTSVLDAIAWGLGGNKYRPSQANR 61


>gi|168022085|ref|XP_001763571.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162685364|gb|EDQ71760.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1028

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 71/239 (29%), Gaps = 28/239 (11%)

Query: 17  NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYADVTRIGSP-SF 72
            ++SL L    +     G NG GK+ IL A+      +     R  S  D  + G     
Sbjct: 2   CHSSLSLDLIDRVNFITGQNGSGKSAILTALCVAFGIKARGTQRATSLKDFIKNGQSYGG 61

Query: 73  FSTFARVEGME----GLADISIKLETRDDRSVRCLQINDVVIRVVD-------ELNKHL- 120
                + EG +     +    I +E R   S +   + D   R V        EL  H  
Sbjct: 62  VIVDIKNEGADAFKPDVYGKIITVERRITESGQSFSMKDERGRKVGHKREDLQELLDHFN 121

Query: 121 -----RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLL-- 173
                    +     R F     E+ RF       +  +    +   E  +   N ++  
Sbjct: 122 IEVENPCVIMTQDKSREFLHAGSEKERFKFFFKATLLQQVSDLLKRIEFSLEEANGVIEG 181

Query: 174 --TEGYFDSSWCSSIEAQM--AELGVKINIARVEMINALS-SLIMEYVQKENFPHIKLS 227
              E         S+E Q+   +    +      +   L+   +    +K      KL 
Sbjct: 182 IKEEMRPYLEEFKSLEDQIKNVQHIEDMVQEAAAVKKKLAWKWVQITDEKLLAERAKLE 240


>gi|114590142|ref|XP_001156946.1| PREDICTED: SMC4 structural maintenance of chromosomes 4-like 1
           isoform 1 [Pan troglodytes]
          Length = 1068

 Score = 45.3 bits (106), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|310722427|ref|YP_003969251.1| recombination protein subunit [Aeromonas phage phiAS4]
 gi|306021270|gb|ADM79805.1| recombination protein subunit [Aeromonas phage phiAS4]
          Length = 176

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS 89
           T+  G NG GK+ +LEAI F   G+ FR  +   +    +         +E  E +  I+
Sbjct: 37  TLCTGKNGAGKSTMLEAIYFALFGKPFRDITKNQLLNENTGKNLLVELWLEYEEKVYHIT 96

Query: 90  IKLETRD 96
             ++   
Sbjct: 97  RGIKPNK 103


>gi|304392247|ref|ZP_07374189.1| DNA repair protein RecN [Ahrensia sp. R2A130]
 gi|303296476|gb|EFL90834.1| DNA repair protein RecN [Ahrensia sp. R2A130]
          Length = 558

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 84/245 (34%), Gaps = 45/245 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +     +L + F A   +  G+ G GK+ +L+++S     RG       D+ R
Sbjct: 2   LAALSIRDIVLIRALDVDFGAGLAVLSGETGAGKSILLDSLSLALGARG-----DGDLVR 56

Query: 67  IGSPS---------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
           +G+                 F +        +  ++  I   T++        IND  + 
Sbjct: 57  VGATQGQVSAVFDVPADHGIFDTLEEHDLVGDSRSEGVILRRTQNADGRTRAWINDRPVS 116

Query: 112 --VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD---------RMVFAIDPRHRRRMI 160
              +  + +HL           +        R  +D           V A     R ++ 
Sbjct: 117 VTQLRAIGRHLVEIHGQHEERAMV--DPAAHRDLVDAFGGLEGQVTEVRAAHVDWRDKLR 174

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMI--NALSSLI 212
           +   +++ R   + +   D+ +  +   ++ EL        ++   R  M+    +++ I
Sbjct: 175 ELN-VLKAR---VEKAARDADYLRASVEELNELSPKEGEEEELAGRRQTMMSAEKIATDI 230

Query: 213 MEYVQ 217
            E  +
Sbjct: 231 NEAYE 235


>gi|218437130|ref|YP_002375459.1| ATPase [Cyanothece sp. PCC 7424]
 gi|218169858|gb|ACK68591.1| ATPase-like protein [Cyanothece sp. PCC 7424]
          Length = 407

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 12/64 (18%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRI 67
            + +  +R +    +      T+ +G+N  GK+N+L  I   S           D+ + 
Sbjct: 3  TKITLRNYRTHKLTTIELQP-VTLLIGNNNSGKSNLLAGIQHFS-----------DLVKR 50

Query: 68 GSPS 71
          G P 
Sbjct: 51 GDPE 54


>gi|27379743|ref|NP_771272.1| hypothetical protein bll4632 [Bradyrhizobium japonicum USDA 110]
 gi|27352896|dbj|BAC49897.1| bll4632 [Bradyrhizobium japonicum USDA 110]
          Length = 520

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRA-- 59
           + +K+K L IS FR  A   +   A HT+ VG N VGK+ + EA+   L P R +RR   
Sbjct: 27  HEVKVKRLTISNFRGVAHGVVHL-AGHTLLVGGNNVGKSTVCEALDLVLGPERLYRRPVI 85

Query: 60  --SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
                   R           RVE +  L D+  + E R  R +R 
Sbjct: 86  DEHDFHCGRYLDDQKEPIEVRVEAV--LTDLPQEAELRFHRHLRR 128


>gi|154244288|ref|YP_001415246.1| DNA repair protein RecN [Xanthobacter autotrophicus Py2]
 gi|154158373|gb|ABS65589.1| DNA repair protein RecN [Xanthobacter autotrophicus Py2]
          Length = 565

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L L      T+  G+ G GK+ +L+A+S    GRG        + R
Sbjct: 2  LAALSIRDIVLIEKLDLTLSEGLTVLTGETGAGKSILLDAVSLALGGRG-----DGALVR 56

Query: 67 IG 68
           G
Sbjct: 57 HG 58


>gi|254439561|ref|ZP_05053055.1| hypothetical protein OA307_4431 [Octadecabacter antarcticus 307]
 gi|198255007|gb|EDY79321.1| hypothetical protein OA307_4431 [Octadecabacter antarcticus 307]
          Length = 616

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          KI+ + +  FR+   L +      T+ VGDN  GK+N+L A++  
Sbjct: 3  KIRRIVVKNFRSILELEMD-AKDLTVIVGDNDCGKSNVLRALNLF 46


>gi|224531716|ref|ZP_03672348.1| p115 protein [Borrelia valaisiana VS116]
 gi|224511181|gb|EEF81587.1| p115 protein [Borrelia valaisiana VS116]
          Length = 815

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++            +  VG NG GK+N+++A+ F       +  R  +
Sbjct: 1  MVLKKIVLLGFKSFLNRQEFEIGENLSFIVGPNGCGKSNLIDAVRFCMGEDNLKFLRVEN 60

Query: 61 YADVT---RIGSPSFFSTFARVEGMEGLADI 88
           +D+    ++G  +F         + G    
Sbjct: 61 ISDLISVSKLGKSNFAEITLFFSNINGEKST 91


>gi|156938172|ref|YP_001435968.1| SMC domain-containing protein [Ignicoccus hospitalis KIN4/I]
 gi|156567156|gb|ABU82561.1| SMC domain protein [Ignicoccus hospitalis KIN4/I]
          Length = 878

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 11/178 (6%)

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           R R+ LL       +        +A+L  ++N  + E I  L     E          + 
Sbjct: 666 RKRDALLRNISETEAKIMETRRNVAKLREELNRYQNE-IEKLR--AYEQYA-IFLEEFRK 721

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD-----LIVDYCDKA 281
           + +  +  K  +SF    EE A ++ D   ++           +         V      
Sbjct: 722 TFSTVIIDKLTESFRKAWEEEANRILDMFDLNVKKVEIKEIIEKRKKGWTIRAVLDGGAR 781

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           +T+   S GE+  V + + L+ A+L+S   G    L++DE +A+LD ++R AL +I++
Sbjct: 782 VTVDSLSGGERVGVALALRLSLAKLLSR--GRISFLIMDEPTAYLDSERRQALKKIIS 837



 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYADV 64
          ++  L +  F +Y +L +       + VG NG GK++ ++AI++ L+     R+ +  ++
Sbjct: 4  QLLKLELRNFLSYENLEVRIPEGVVVVVGPNGAGKSSFVDAIAYALTSAAVSRKVTNKEL 63

Query: 65 TRIGSPSFFST 75
             G+ S    
Sbjct: 64 INYGAKSAEVV 74


>gi|114705260|ref|ZP_01438168.1| probable dna repair protein [Fulvimarina pelagi HTCC2506]
 gi|114540045|gb|EAU43165.1| probable dna repair protein [Fulvimarina pelagi HTCC2506]
          Length = 556

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L I +      L L       +  G+ G GK+ +L+A+S    GRG        + R
Sbjct: 2  LVHLAIRDIVLIERLDLSLSEGLAVLTGETGAGKSIMLDALSLALGGRG-----DGSLVR 56

Query: 67 IGSPSFFSTFA 77
           G+     T  
Sbjct: 57 HGAERGEVTAV 67


>gi|332878965|ref|ZP_08446678.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
          F0087]
 gi|332683072|gb|EGJ55956.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
          F0087]
          Length = 259

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +KI  + +  FR      L  + + ++ +G N  GKT+IL
Sbjct: 1  MKIFKIQVENFRLLKKFSLDLEDELSLVIGKNNTGKTSIL 40


>gi|284922561|emb|CBG35648.1| DNA repair protein [Escherichia coli 042]
          Length = 553

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 73/224 (32%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              P+        +  +G   +  ++ + D RS   +    V +  
Sbjct: 57  NGATRADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|153005164|ref|YP_001379489.1| ABC transporter-like protein [Anaeromyxobacter sp. Fw109-5]
 gi|152028737|gb|ABS26505.1| ABC transporter related [Anaeromyxobacter sp. Fw109-5]
          Length = 259

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE+K V +   LA             +LLLDE +A+LD      +  ++  +      
Sbjct: 141 SGGEKKRVALAAILAL---------EPRVLLLDEATANLDPATAARVVELLGALDVTTLA 191

Query: 348 TGTDKSVFDSLNETAKFMRISNHQAL 373
           +  + SV + L E A  +  +    L
Sbjct: 192 STHNLSVVEELGERAILLDRAGGGVL 217


>gi|110738867|dbj|BAF01356.1| putative chromosome associated protein [Arabidopsis thaliana]
          Length = 465

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 5   IKIKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRAS 60
           + IK + I  F++Y        F  +    VG NG GK+N   AI F+     +  R + 
Sbjct: 1   MFIKQVIIEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLR-SE 59

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                           A VE +   +D    ++  + R  R + +  
Sbjct: 60  DRHALLHEGAGHQVVSAFVEIVFDNSDNRFPVDKEEIRLRRTVGLKK 106


>gi|66362792|ref|XP_628362.1| SMC4'SMC4, chromosomal ATpase with giant coiled coil regions'
           [Cryptosporidium parvum Iowa II]
 gi|46229789|gb|EAK90607.1| SMC4'SMC4, chromosomal ATpase with giant coiled coil regions'
           [Cryptosporidium parvum Iowa II]
          Length = 1366

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
            R+ I  + +  F++Y   ++   F    T  VG NG GK+N+++A+ F+     +  R 
Sbjct: 68  PRLIIHKIVLENFKSYGGSKVIGPFHKSFTAIVGPNGSGKSNVIDAMLFVFGKRAKHMRL 127

Query: 59  ASYADVTR 66
              +++  
Sbjct: 128 NKVSELIH 135


>gi|323497205|ref|ZP_08102225.1| ATP-dependent endonuclease [Vibrio sinaloensis DSM 21326]
 gi|323317780|gb|EGA70771.1| ATP-dependent endonuclease [Vibrio sinaloensis DSM 21326]
          Length = 542

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + ++ + IS FR    L + FD   T  +G+N  GK+++L+A+S   P  G
Sbjct: 1  MLLERIEISGFRGIKRLSIAFDE-LTTLIGENTWGKSSLLDALSVALPAEG 50


>gi|297379429|gb|ADI34316.1| Hypothetical protein HPV225_0220 [Helicobacter pylori v225d]
          Length = 880

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 70/185 (37%), Gaps = 35/185 (18%)

Query: 5   IKI--KFLNISEFRNYAS-------LRLVFDA--QHTIFVGDNGVGKTNILEAISFLSPG 53
           +K+  + L + +FRN          L   F+      I VG+N VGK+NILEA+      
Sbjct: 1   MKLYKRVLKLHQFRNLGKNLPTELLLNSSFEKYGGLVILVGENNVGKSNILEAL------ 54

Query: 54  RGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
           + F   +  D+        F      + +  L + +I      D S   L+I     ++ 
Sbjct: 55  KAF---NDTDIKLCNENDCFKAHESEDTVLNLEEETILNNKTIDFSCVDLKI--QTKKIG 109

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLMRG 168
           ++L +  +     P    +F G       F++ ++      +    ++ ++       + 
Sbjct: 110 EDLKELSKTLISYP--FSVFIGG------FINLIMSYGVLDSFLKFYKEKLKLNAFATKQ 161

Query: 169 RNRLL 173
            + LL
Sbjct: 162 NHNLL 166


>gi|326780172|ref|ZP_08239437.1| DNA repair protein RecN [Streptomyces cf. griseus XylebKG-1]
 gi|326660505|gb|EGE45351.1| DNA repair protein RecN [Streptomyces cf. griseus XylebKG-1]
          Length = 580

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +   +
Sbjct: 7  MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADPAL 56

Query: 65 TRIGSPSFFSTFARVEGMEGLA 86
           R+G+ +      R+   EG A
Sbjct: 57 VRVGAKAA-VVEGRITVSEGDA 77



 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 26/147 (17%)

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             + A+++ LG  +  AR E     +  + E +     PH ++S      G  D++    
Sbjct: 360 DGLRAELSVLGQALTDARTEAAARFAEAVTEELASLAMPHARVSFAISQTGAADEASG-- 417

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD-LIVDYCDKA-----ITIAHGSTGEQKVVLV 297
                        +D   R    GP  +D + +                 S GE   V++
Sbjct: 418 -------------IDIGGRSVAYGPSGADEVELLLAPHPGAQPRPIAKGASGGELSRVML 464

Query: 298 GIFLAHARLISNTTGFAPILLLDEISA 324
                   ++   +   P  L DE+ A
Sbjct: 465 A-----VEVVFAGSDPVPTYLFDEVDA 486


>gi|292622980|ref|XP_001337776.2| PREDICTED: structural maintenance of chromosomes protein 6 [Danio
           rerio]
          Length = 948

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F ++  L  L F A     VG+NG GK+ IL A+     G+     R  S  
Sbjct: 65  IESITLRNFMSHHLLGPLKFGANVNFIVGNNGTGKSAILTALIVGLGGKATTTNRGTSLK 124

Query: 63  DVTRIGSPS 71
              + G  S
Sbjct: 125 GFVKYGETS 133


>gi|240279089|gb|EER42594.1| SMC2 protein [Ajellomyces capsulatus H143]
          Length = 229

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIVEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSKSPIGFEEYASISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|260587864|ref|ZP_05853777.1| ABC transporter, ATP-binding protein [Blautia hansenii DSM 20583]
 gi|260542129|gb|EEX22698.1| ABC transporter, ATP-binding protein [Blautia hansenii DSM 20583]
          Length = 242

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++ +++   RN     L F++  T F G+NG GK+ +LEAI+ 
Sbjct: 23 LRNISVL--RNLKH--LEFNSNITFFAGENGSGKSTLLEAIAV 61


>gi|218767667|ref|YP_002342179.1| hypothetical protein NMA0724 [Neisseria meningitidis Z2491]
 gi|121051675|emb|CAM07978.1| hypothetical protein NMA0724 [Neisseria meningitidis Z2491]
          Length = 1161

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          +++  + +S F+++     +    Q    +G NG GK+N+++A+ ++      +  R  S
Sbjct: 1  MRLTHIKLSGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEVSAKQLRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGAA 70



 Score = 37.6 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 36/218 (16%)

Query: 158  RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARV----EMINALSSLIM 213
             ++  +  +    R        ++   ++EA +A+   K+  + +    + I AL ++ +
Sbjct: 904  ALLQQQEALINAKRYHQNLTERAADLDALEA-LAKESPKVLNSSIGSLSQQIEALGAVNL 962

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----DSMSRR----- 263
              +Q+      +             +   L+E  A+     +       D+++ +     
Sbjct: 963  AALQELEEARERDGYYRSQSEDVQTAITLLEEAIAQIDDKTKARFKETFDAVNGKVQTFF 1022

Query: 264  -TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVLVGIFLAHARLI 307
             TL G   + L +   D               K  TI   S GE+ +  + +  A   L 
Sbjct: 1023 PTLFGGGEATLKMIGDDLLTAGVSIMARPPGKKNSTIHLLSGGEKALTAMSLVFALFSL- 1081

Query: 308  SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI 345
                  AP  LLDE+ A LD+   +    +V ++ +Q 
Sbjct: 1082 ----NPAPFCLLDEVDAPLDDANTSRFCNLVKEMSAQT 1115


>gi|330965953|gb|EGH66213.1| chromosome partition protein [Pseudomonas syringae pv. actinidiae
          str. M302091]
          Length = 596

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +++  L I  FR   +  + F     + +GDN  GKT ++EA++ 
Sbjct: 1  MRVANLRIENFRGVKTGFVQFGKHP-VLIGDNNTGKTTLIEAMTL 44



 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
              +G   ++ L+E   HL    +  L + V  + +Q F+T T   +  S+ +    + +
Sbjct: 300 RALSGGEFLMALEEPEIHLPPSAQQRLVQRVQALSTQTFVT-THSPLVASIADPTSVLVL 358

Query: 368 SNHQAL 373
             H+ +
Sbjct: 359 KKHEGV 364


>gi|320528394|ref|ZP_08029556.1| DNA repair protein RecN [Solobacterium moorei F0204]
 gi|320131308|gb|EFW23876.1| DNA repair protein RecN [Solobacterium moorei F0204]
          Length = 547

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K L I  F     L L F +  + F G+ G GK+ +L+AIS L   R
Sbjct: 2  LKHLYIKNFILIDELNLDFKSGFSAFTGETGAGKSIMLDAISILCAER 49


>gi|295103682|emb|CBL01226.1| SMC proteins Flexible Hinge Domain. [Faecalibacterium prausnitzii
          SL3/3]
          Length = 1099

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          +K L +  + N+ +      A+ T  +G N VGKT IL+AI   L+  R F
Sbjct: 4  LKRLKLINWHNFENTTFDC-ARLTYMIGVNAVGKTTILDAIRYCLTTNRNF 53



 Score = 37.2 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 79/234 (33%), Gaps = 36/234 (15%)

Query: 154  RHRRRMIDFERLMRGRNRL---------LTEGYFDSSWCSSIEAQMAELGVKINI----- 199
            R+  R+   +R  + R R          +          + +  Q+   G ++       
Sbjct: 837  RYAARLEQAQRDCKDRFRKDILFRMKDDIFNARRQFRELNKVMEQL-TYGEEVYRFELEP 895

Query: 200  ARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
            +R   + A   +I++   ++      L  L    D  +++    L E+    + +     
Sbjct: 896  SRDPQLAAFYQVIVDKGNQQMTEGDSLDNLAATADPAYERQVDELMEKIMADVDEN-TRA 954

Query: 259  SMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVL----------------VGIF 300
                RT  G   SD      Y D  I + +  TG+Q  +                 V I 
Sbjct: 955  RQEGRTAAGATLSDYVDYRTYLDYDIKVTNQVTGQQAYLSRVSRDSSGGENQAPFYVAIC 1014

Query: 301  LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDKS 353
             +  ++   +     ++LLDE  + +  D+   +  +   +  Q+  ++  +KS
Sbjct: 1015 ASLLQIYQKSENSIRLVLLDEAFSKMTSDRIRPMMELFRRLQLQVLLISTVEKS 1068


>gi|242373819|ref|ZP_04819393.1| DNA repair protein RecN [Staphylococcus epidermidis M23864:W1]
 gi|242348373|gb|EES39975.1| DNA repair protein RecN [Staphylococcus epidermidis M23864:W1]
          Length = 558

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIDELEIHFSDGLTVLSGETGSGKSIIIDAIGQLI---GMRASSD--YVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAV 63


>gi|221504653|gb|EEE30326.1| SMC protein, putative [Toxoplasma gondii VEG]
          Length = 1200

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
          + I+ + +  F++Y++         Q     G NG GK+NIL++I F+         R  
Sbjct: 1  MYIEAIVLEGFKSYSNRVYVGPLHPQFNAVTGLNGTGKSNILDSICFVLGITNHALVRAT 60

Query: 60 SYADVT 65
             D+ 
Sbjct: 61 KLDDLV 66


>gi|221481578|gb|EEE19960.1| structural maintenance of chromosome protein, putative
          [Toxoplasma gondii GT1]
          Length = 1200

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
          + I+ + +  F++Y++         Q     G NG GK+NIL++I F+         R  
Sbjct: 1  MYIEAIVLEGFKSYSNRVYVGPLHPQFNAVTGLNGTGKSNILDSICFVLGITNHALVRAT 60

Query: 60 SYADVT 65
             D+ 
Sbjct: 61 KLDDLV 66


>gi|182439508|ref|YP_001827227.1| putative recombination and DNA repair protein [Streptomyces
          griseus subsp. griseus NBRC 13350]
 gi|178468024|dbj|BAG22544.1| putative recombination and DNA repair protein [Streptomyces
          griseus subsp. griseus NBRC 13350]
          Length = 580

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +   +
Sbjct: 7  MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADPAL 56

Query: 65 TRIGSPSFFSTFARVEGMEGLA 86
           R+G+ +      R+   EG A
Sbjct: 57 VRVGAKAA-VVEGRITVSEGDA 77



 Score = 36.0 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 26/147 (17%)

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             + A+++ LG  +  AR E     +  + E +     PH ++S      G  D++    
Sbjct: 360 DGLRAELSVLGQALTDARTEAAARFAEAVTEELASLAMPHARVSFAISQTGAADEASG-- 417

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSD-LIVDYCDKA-----ITIAHGSTGEQKVVLV 297
                        +D   R    GP  +D + +                 S GE   V++
Sbjct: 418 -------------IDIGGRSVAYGPSGADEVELLLAPHPGAQPRPIAKGASGGELSRVML 464

Query: 298 GIFLAHARLISNTTGFAPILLLDEISA 324
                   ++   +   P  L DE+ A
Sbjct: 465 A-----VEVVFAGSDPVPTYLFDEVDA 486


>gi|160944314|ref|ZP_02091543.1| hypothetical protein FAEPRAM212_01825 [Faecalibacterium
          prausnitzii M21/2]
 gi|158444496|gb|EDP21500.1| hypothetical protein FAEPRAM212_01825 [Faecalibacterium
          prausnitzii M21/2]
          Length = 1099

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGF 56
          +K L +  + N+ +      A+ T  +G N VGKT IL+AI   L+  R F
Sbjct: 4  LKRLKLINWHNFENTTFDC-ARLTYMIGVNAVGKTTILDAIRYCLTTNRNF 53



 Score = 37.2 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 79/234 (33%), Gaps = 36/234 (15%)

Query: 154  RHRRRMIDFERLMRGRNRL---------LTEGYFDSSWCSSIEAQMAELGVKINI----- 199
            R+  R+   +R  + R R          +          + +  Q+   G ++       
Sbjct: 837  RYAARLEQAQRDCKDRFRKDILFRMKDDIFNARRQFRELNKVMEQL-TYGEEVYRFELEP 895

Query: 200  ARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
            +R   + A   +I++   ++      L  L    D  +++    L E+    + +     
Sbjct: 896  SRDPQLAAFYQVIVDKGNQQMTEGDSLDNLAATADPAYERQVDELMEKIMADVDEN-TRA 954

Query: 259  SMSRRTLIGPHRSDL--IVDYCDKAITIAHGSTGEQKVVL----------------VGIF 300
                RT  G   SD      Y D  I + +  TG+Q  +                 V I 
Sbjct: 955  RQEGRTAAGATLSDYVDYRTYLDYDIKVTNQVTGQQAYLSRVSRDSSGGENQAPFYVAIC 1014

Query: 301  LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-FMTGTDKS 353
             +  ++   +     ++LLDE  + +  D+   +  +   +  Q+  ++  +KS
Sbjct: 1015 ASLLQIYQKSENSIRLVLLDEAFSKMTSDRIRPMMELFRRLQLQVLLISTVEKS 1068


>gi|113971469|ref|YP_735262.1| hypothetical protein Shewmr4_3134 [Shewanella sp. MR-4]
 gi|113886153|gb|ABI40205.1| conserved hypothetical protein [Shewanella sp. MR-4]
          Length = 390

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 46/137 (33%), Gaps = 9/137 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS +R    + L    +  +  G NG GK+N+ +A+  L+            + +
Sbjct: 2   LTTLAISNYRTLREIVLPLG-RLNLVTGANGSGKSNLYKALRLLAQTAQ--GGVVNALAQ 58

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G              +G+      +E    ++ + L++         E   +L    L 
Sbjct: 59  EGGLDSCFWAGPENLTKGMLAGDTPIEATVRQAPKRLKLG-----FAGEDFSYLIELGLP 113

Query: 127 -PSMDRIFSGLSMERRR 142
            P    +F      +R 
Sbjct: 114 KPDSTTLFGLDPQIKRE 130


>gi|315425147|dbj|BAJ46818.1| hypothetical conserved protein [Candidatus Caldiarchaeum
          subterraneum]
          Length = 431

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYADV 64
          I+ L I  F++  ++ L      T+ +G N  GK+++L A++ L  S G+G   A+   +
Sbjct: 2  IEKLTIQGFKSLKNVSLDLG-LITVIIGPNRSGKSSVLHALAALRQSLGQGHLYAN-GQM 59

Query: 65 TRIGS 69
            +GS
Sbjct: 60 INLGS 64


>gi|257869061|ref|ZP_05648714.1| DNA repair protein RecN [Enterococcus gallinarum EG2]
 gi|257803225|gb|EEV32047.1| DNA repair protein RecN [Enterococcus gallinarum EG2]
          Length = 556

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L I  F   + L L F    T   G+ G GK+ I++A+  L+ GRG       D  R
Sbjct: 2  LLELTIQNFAIISHLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRG-----STDYLR 56

Query: 67 IGSP 70
           G+ 
Sbjct: 57 QGAE 60


>gi|257080653|ref|ZP_05575014.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256988683|gb|EEU75985.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 433

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISF 49
          +KI  L +   +   ++ +  +    TI  G+N  GKT++L+AI++
Sbjct: 1  MKINSLEVENVKRVKAVVIQPNENGLTILGGNNNQGKTSVLDAIAW 46


>gi|218547866|ref|YP_002381657.1| recombination and repair protein [Escherichia fergusonii ATCC
           35469]
 gi|218355407|emb|CAQ88016.1| recombination and repair protein [Escherichia fergusonii ATCC
           35469]
 gi|323963924|gb|EGB59417.1| DNA repair protein RecN [Escherichia coli M863]
 gi|325496317|gb|EGC94176.1| recombination and repair protein [Escherichia fergusonii ECD227]
 gi|327252321|gb|EGE63993.1| DNA repair protein RecN [Escherichia coli STEC_7v]
          Length = 553

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 86/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + F+  +    L  +  + +  D R     ++     R    +N       
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLE-ENQLEDGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+         
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKPEHQKFLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
               + + L  +   AR ++ +     +  + Q       +  L  +   + ++      
Sbjct: 148 GYANETSLL--QEMTARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|209523570|ref|ZP_03272124.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209495975|gb|EDZ96276.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 247

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KI  L I  +R + SL +       + +G NG GK+ + +   FL
Sbjct: 1  MKIVALRIKNYRAFESLEIKDIPPFCVIIGANGTGKSTLFDIFGFL 46


>gi|149731053|ref|XP_001488501.1| PREDICTED: similar to Structural maintenance of chromosomes protein
           4 (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C
           homolog) [Equus caballus]
          Length = 1252

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 43  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 102

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 103 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 131


>gi|91202715|emb|CAJ72354.1| hypothetical protein kustd1609 [Candidatus Kuenenia
          stuttgartiensis]
          Length = 651

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +++K + I  ++              T  VG N  GK+ +L+A+  L
Sbjct: 1  MRLKTVRIHNYKCIDDSEEFSLAP-ITCLVGKNESGKSAVLQALYKL 46


>gi|83649649|ref|YP_438084.1| DNA repair ATPase [Hahella chejuensis KCTC 2396]
 gi|83637692|gb|ABC33659.1| ATPase involved in DNA repair [Hahella chejuensis KCTC 2396]
          Length = 663

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 11/148 (7%)

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL-IVDYCDKAITIAH 286
           L  F     +     L++E+ K      + D +     I P    + ++D     I    
Sbjct: 502 LESFSSKSRETRINTLEQEFIKSFAKLARKDDLMITAKIDPETFSVSLIDGTGHIIDKKK 561

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQI 345
            S GE+++  + +       +  T+G    +++D     LD   R  L +        Q+
Sbjct: 562 LSAGEKQIYAIAM----LEALGRTSGRNLPIIIDTPLGRLDSHHRENLVKNYFPTASHQV 617

Query: 346 FMTGTDKSVFDSL-----NETAKFMRIS 368
            +  TD  V +        E +    ++
Sbjct: 618 LILSTDTEVDEDFYKELSPEISHAFEVA 645


>gi|46107656|ref|XP_380887.1| hypothetical protein FG00711.1 [Gibberella zeae PH-1]
          Length = 1976

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I  L+IS  R+++      + F+   T+ VG NG GKT I+E + + + G
Sbjct: 3  RIDKLSISGVRSFSPSVREAIQFNTPLTLIVGYNGSGKTTIIECLKYATTG 53


>gi|228476135|ref|ZP_04060843.1| DNA repair protein RecN [Staphylococcus hominis SK119]
 gi|228269958|gb|EEK11438.1| DNA repair protein RecN [Staphylococcus hominis SK119]
          Length = 557

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2  LQTLSIKQFAIIDELEIHFSDGLTVLSGETGAGKSIIIDAIGQLI---GMRASSD--FVR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 HGEKKAI 63


>gi|225620712|ref|YP_002721970.1| hypothetical protein BHWA1_01802 [Brachyspira hyodysenteriae WA1]
 gi|225215532|gb|ACN84266.1| hypothetical protein BHWA1_01802 [Brachyspira hyodysenteriae WA1]
          Length = 113

 Score = 45.3 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +  + I  FR    L +       IF+G    GKT+++EAI
Sbjct: 2  LNSIEIKNFRGIKHLTIDNFKNINIFLGKANTGKTSVIEAI 42


>gi|325119395|emb|CBZ54948.1| Smc ABC ATpase, related [Neospora caninum Liverpool]
          Length = 1982

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           KI  +++ +F N+  L     +   +  G NG GK+ +  AI F  
Sbjct: 653 KITRVDLRDFLNHKQLSWTPGSNCNVVTGMNGSGKSALARAILFCC 698


>gi|237843805|ref|XP_002371200.1| structural maintenance of chromosomes protein, putative
          [Toxoplasma gondii ME49]
 gi|211968864|gb|EEB04060.1| structural maintenance of chromosomes protein, putative
          [Toxoplasma gondii ME49]
          Length = 1217

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
          + I+ + +  F++Y++         Q     G NG GK+NIL++I F+         R  
Sbjct: 1  MYIEAIVLEGFKSYSNRVYVGPLHPQFNAVTGLNGTGKSNILDSICFVLGITNHALVRAT 60

Query: 60 SYADVT 65
             D+ 
Sbjct: 61 KLDDLV 66


>gi|310794967|gb|EFQ30428.1| RecF/RecN/SMC N terminal domain-containing protein [Glomerella
           graminicola M1.001]
          Length = 1549

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            R+ I +L ++ F++YA    +  F    +  VG NG GK+N+++++ F+   R    R+
Sbjct: 265 PRLVISYLILTNFKSYAGRQEVGPFHGSFSSVVGPNGSGKSNVIDSLLFVFGFRASKMRQ 324

Query: 59  ASYADVTRIGSPSFFSTFARV 79
              + +    +      +  V
Sbjct: 325 GKLSALIHNSAQHPNLDYCEV 345


>gi|302898855|ref|XP_003047930.1| condensin complex component SMC4 [Nectria haematococca mpVI
           77-13-4]
 gi|256728862|gb|EEU42217.1| condensin complex component SMC4 [Nectria haematococca mpVI
           77-13-4]
          Length = 1449

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 7   IKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
           +  L ++ F++YA    +  F A  +  VG NG GK+N+++++ F+    GFR +     
Sbjct: 203 LTHLILNNFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASKMRQG 259

Query: 64  ----VTRIGSPSFFSTFARV 79
               +    +      +  V
Sbjct: 260 KISALIHNSAQHPNLEYCEV 279


>gi|213962676|ref|ZP_03390937.1| DNA repair protein RecN [Capnocytophaga sputigena Capno]
 gi|213954671|gb|EEB65992.1| DNA repair protein RecN [Capnocytophaga sputigena Capno]
          Length = 552

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 46/124 (37%), Gaps = 12/124 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR----GFRRASYA 62
           +  L+I  +     L++ F     I  G+ G GK+ +L+A+S +   R      R     
Sbjct: 2   LTSLSIKNYALIDDLKVDFPEGFIIITGETGSGKSIMLDALSLILGKRADMASLRNKEEK 61

Query: 63  DVTRIGSP----SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDEL 116
            V          SF S F  ++       I I+ E       R   INDV     V+  L
Sbjct: 62  CVIEAEFSLQKYSFQSLFNELDLDYDPQTI-IRREILPSGKSRAF-INDVPATLEVLSRL 119

Query: 117 NKHL 120
            + L
Sbjct: 120 GELL 123


>gi|114590144|ref|XP_001157759.1| PREDICTED: SMC4 structural maintenance of chromosomes 4-like 1
          isoform 8 [Pan troglodytes]
          Length = 1216

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2  TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
            R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 7  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 66

Query: 58 RASYADVTRIGSPSFFSTFARVEGMEGLA 86
              + +              VE      
Sbjct: 67 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 95


>gi|74003564|ref|XP_535848.2| PREDICTED: similar to Structural maintenance of chromosomes 4-like
           1 protein (Chromosome-associated polypeptide C) (hCAP-C)
           (XCAP-C homolog) isoform 1 [Canis familiaris]
          Length = 1288

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|157825368|ref|YP_001493088.1| DNA repair protein RecN [Rickettsia akari str. Hartford]
 gi|157799326|gb|ABV74580.1| DNA repair protein RecN [Rickettsia akari str. Hartford]
          Length = 546

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 15/115 (13%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            L++  F     L + F+    +  G+ G GK+ +L+AI F    +     +  ++ + G
Sbjct: 4   SLSVKHFILIDELEIEFNKGLCVITGETGAGKSILLDAILFCLGYK-----TSNNIIKRG 58

Query: 69  SPSFFSTF----------ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
                               ++ +    ++ +    +  +  +   IN+ V+   
Sbjct: 59  KDYAVVNIIFSLNEEIKNFLIQNLIEPEELLLVKCLQKAKGRKKFFINNQVVNKA 113


>gi|324111251|gb|EGC05233.1| DNA repair protein RecN [Escherichia fergusonii B253]
          Length = 553

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 86/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + F+  +    L  +  + +  D R     ++     R    +N       
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLE-ENQLEDGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+         
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKPEHQKFLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
               + + L  +   AR ++ +     +  + Q       +  L  +   + ++      
Sbjct: 148 GYANETSLL--QEMTARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|323978475|gb|EGB73558.1| DNA repair protein RecN [Escherichia coli TW10509]
          Length = 553

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 86/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + F+  +    L  +  + +  D R     ++     R    +N       
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLE-ENQLEDGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+         
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKPEHQKFLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
               + + L  +   AR ++ +     +  + Q       +  L  +   + ++      
Sbjct: 148 GYANETSLL--QEMTARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|195378470|ref|XP_002048007.1| GJ11591 [Drosophila virilis]
 gi|194155165|gb|EDW70349.1| GJ11591 [Drosophila virilis]
          Length = 1035

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 46/289 (15%), Positives = 94/289 (32%), Gaps = 43/289 (14%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +I+ +   +F +Y+ +         +  G NG GK+ I+ AI  L  G       R +S 
Sbjct: 15  RIQSVYCKDFVSYSEITYFPKEYLNVLTGPNGTGKSTIVSAI-ILGLGGDPQLLDRSSSI 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL----- 116
           +D  +  S S  +    + G +  +  + K     +   R   +N   +     L     
Sbjct: 74  SDYIKS-SKSSAAIVITIYGKQKDSVEAFKRTINHNGESRYF-VNSKELSKSKYLAIIAT 131

Query: 117 --NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-----AIDPRHRRRMIDFERLM--- 166
              +   +   +P   R+     M  +  L   +       +            + +   
Sbjct: 132 YNIQVSNLCQFLPQD-RVQDFSKMNPQELLVNTMSSVCDNQLIKNFIDLKNMRIKQLGAH 190

Query: 167 ----RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL-IMEYVQKENF 221
               R  ++LL E         S++             R E++  L+     +   +   
Sbjct: 191 ADRERENDKLLKEQKRLEQLQISVDQ---------YQERQEVLQKLNVYKAKKLWTEVTL 241

Query: 222 PHIKL-SLTGFLDGKFDQSFCALKEEYAKKLFD----GRKMDSMSRRTL 265
              K+ S    LD K  ++  +LK  Y  +        RK + +  +T+
Sbjct: 242 AEEKIDSYKSELD-KAKENCESLKNAYELEKRSQEGISRKREELKEKTI 289


>gi|38505558|ref|NP_942179.1| hypothetical protein slr5023 [Synechocystis sp. PCC 6803]
 gi|38423582|dbj|BAD01793.1| slr5023 [Synechocystis sp. PCC 6803]
          Length = 393

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 5/135 (3%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  + I  +R +  +++       + +G NG GK+ + +   FL      +      +
Sbjct: 1   MKIVSIKIKNYRVFEDIKITNIPSFCVIIGANGTGKSTLFDVFGFLRDA--LKNNIRQAL 58

Query: 65  -TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV--DELNKHLR 121
             R G     +     E +E      +++   +      L I     + V   E+ ++ R
Sbjct: 59  QIRGGFKEVVTRGKESEDIEIELKFRMEILATERLVTYILIIGQEGKKPVIKREILRYKR 118

Query: 122 ISWLVPSMDRIFSGL 136
             +  P     F   
Sbjct: 119 GEYGSPFHFLDFHNG 133


>gi|26353334|dbj|BAC40297.1| unnamed protein product [Mus musculus]
          Length = 602

 Score = 45.3 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 77  APRLMITHIVNQNFKSYAGEKVLGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 136

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 137 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 165


>gi|332969955|gb|EGK08955.1| SMC structural maintenance of chromosomes partitioning protein
          [Kingella kingae ATCC 23330]
          Length = 1181

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + ++ F+++     +    Q    +G NG GK+N+++A+ ++   +  +  R  S
Sbjct: 20 MRLTQIKLAGFKSFTDPTTIHVPGQLVAVIGPNGCGKSNVIDAVRWVLGEASAKQLRGES 79

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 80 MQDVIFNGAA 89



 Score = 36.8 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  TI   S GE+ +  + +  A   L       AP  LLDE+ A LD+   +    +
Sbjct: 1074 GKKNSTIHLLSGGEKALTAMSLVFALFSL-----NPAPFCLLDEVDAPLDDANTSRFCNL 1128

Query: 338  VTDIGSQI 345
            V ++ +Q 
Sbjct: 1129 VKEMSAQT 1136


>gi|293412005|ref|ZP_06654728.1| DNA repair protein RecN [Escherichia coli B354]
 gi|291468776|gb|EFF11267.1| DNA repair protein RecN [Escherichia coli B354]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 86/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + F+  +    L  +  + +  D R     ++     R    +N       
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLE-ENQLEDGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+         
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKPEHQKFLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
               + + L  +   AR ++ +     +  + Q       +  L  +   + ++      
Sbjct: 148 GYANETSLL--QEMTARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|312889268|ref|ZP_07748822.1| ATP-dependent endonuclease of the OLD family [Mucilaginibacter
          paludis DSM 18603]
 gi|311298145|gb|EFQ75260.1| ATP-dependent endonuclease of the OLD family [Mucilaginibacter
          paludis DSM 18603]
          Length = 708

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          K+    +  FR+      +    +T  VG N  GKTN+L A+  L
Sbjct: 4  KLLRYKVINFRSIEESDWITAGDNTCLVGTNEAGKTNLLIALWKL 48


>gi|309356422|emb|CAP37231.2| CBR-DPY-27 protein [Caenorhabditis briggsae AF16]
          Length = 1575

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 7   IKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           I+ + +  F++Y        F    T+ +G NG GK+NI++A+ F+   +  R
Sbjct: 100 IQDIIVHNFKSYKGSHQLGPFHKNLTMVMGPNGSGKSNIIDALLFVFGFKSKR 152


>gi|300814948|ref|ZP_07095176.1| DNA repair protein RecN [Peptoniphilus sp. oral taxon 836 str.
          F0141]
 gi|300510918|gb|EFK38190.1| DNA repair protein RecN [Peptoniphilus sp. oral taxon 836 str.
          F0141]
          Length = 555

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI  +     +++ F     +  G+ G GK+ I++A+  +  GR     +  DV +
Sbjct: 2  LLELNIENYAIIEDMKINFQKGLNVITGETGSGKSIIIDALGMVLGGR-----ANKDVIK 56

Query: 67 IGSPSFFSTFARVEGMEGLADISIK 91
           G       F  +E +    D  IK
Sbjct: 57 AGKD-----FCHIEAIFTTYDKDIK 76


>gi|300789864|ref|YP_003770155.1| exonuclease SbcC [Amycolatopsis mediterranei U32]
 gi|299799378|gb|ADJ49753.1| exonuclease SbcC [Amycolatopsis mediterranei U32]
          Length = 983

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 69/230 (30%), Gaps = 16/230 (6%)

Query: 5   IKIKFLNISEF-----RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           +++  L +  F     R      ++      +  G+ G GKT +L+AI+F   G   G R
Sbjct: 1   MRLHRLEVEAFGPYCAREVVDFDVLGADGLFLLHGETGAGKTTLLDAIAFALFGVVPGAR 60

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                 +    +     T   +E       + I       R  R  +        V    
Sbjct: 61  N-EAKRLRCDLAERDQVTEVALELTVQGHRLKIVRNPEYQRPKRRGEGTTTQQARVSLSW 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR----GRNRLL 173
                + L P        ++    R L                +F R +R     R +LL
Sbjct: 120 VGTAPAGLAPEGLIRIEEVARTVERLLGMTAAQFFQVVLLPQGEFARFLRSDTAEREKLL 179

Query: 174 TEGYFDSSWCSSIEAQMAELGVKI---NIARVEMINALSSLIMEYVQKEN 220
              +    +    E   A+L  +      AR   +  L +   +  Q++ 
Sbjct: 180 ERLFGTERFADV-ERWFADLRAERGRELEARQRDVRELLARYAQEAQQDP 228


>gi|53714268|ref|YP_100260.1| DNA repair protein RecN [Bacteroides fragilis YCH46]
 gi|52217133|dbj|BAD49726.1| DNA repair protein RecN [Bacteroides fragilis YCH46]
          Length = 561

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 16/199 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  R+ +  
Sbjct: 2   LRSLYIQNYALIEKLDIRFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRQGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            V   R   S      F     +E   +  ++ E +     R   IND       + EL 
Sbjct: 62  CVIEARFDISAYHMEAFFEENELEYEPECILRREVQSSGKSRAF-INDTPASLTQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR---HRRRMIDFERLMRGRNRLLT 174
           + L           +       +   LD ++   +     +     D+++L +  + L+ 
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLD-ILSHNEEALDVYHHLYQDWKKLSKELDELIV 177

Query: 175 EGYFDSSWCSSIEAQMAEL 193
                 +    I  Q+ +L
Sbjct: 178 LAEQSKTDEDYIRFQLEQL 196


>gi|313201134|ref|YP_004039792.1| chromosome segregation protein smc [Methylovorus sp. MP688]
 gi|312440450|gb|ADQ84556.1| chromosome segregation protein SMC [Methylovorus sp. MP688]
          Length = 1173

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L ++ F+++     L    Q    VG NG GK+N++E+I ++   S  +  R  S
Sbjct: 1   MRLTHLKLAGFKSFVDPTTLHIHGQRVGVVGPNGCGKSNVMESIRWVLGESSAKEMRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVE----------GMEGLADISIKLETRDDR-SVRCLQINDV 108
              V   GS +    + A VE          G E      I ++   +R       IN+ 
Sbjct: 61  MDAVIFNGSANRKPISRASVELIFDNSLGGAGGEWAQYAEISVKRVIERDKGSSYYINNS 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +R  D         L           ++ RI      E R FL+
Sbjct: 121 AVRRRDVADLFLGTGLGGRAYAIIGQNTISRIIEAKPEEMRVFLE 165



 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 31/166 (18%)

Query: 203  EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM----- 257
            E I AL  + +  VQ+      +           DQ+   L++   +   + R       
Sbjct: 963  EEIEALGPVNLAAVQELESEKERKQYLDSQATDLDQAIQTLEDAIRRIDRETRSRLQQTF 1022

Query: 258  DSMSRR------TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVL 296
            D  +R       +L G  ++ L +   +               K  TI   S GE+ +  
Sbjct: 1023 DEANRHFGELFASLFGGGQARLELLGDEILDTGMQVFAQPPGKKNSTIHLLSGGEKALTA 1082

Query: 297  VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
            + +  A  RL       AP  L+DE+ A LD+        +V  + 
Sbjct: 1083 LALVFALFRL-----NPAPFCLMDEVDAPLDDSNTERFCAMVKKMS 1123


>gi|153868925|ref|ZP_01998649.1| ATPase [Beggiatoa sp. PS]
 gi|152074506|gb|EDN71353.1| ATPase [Beggiatoa sp. PS]
          Length = 380

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  + +  + N+  + +    +    +G N  GK+N L+A  FL
Sbjct: 1  MKVSRIVLKNWFNFQLVDVPLVDRV-FLIGANASGKSNFLDAFRFL 45


>gi|67624445|ref|XP_668505.1| stable maintenance of chromosomes; Smc4p [Cryptosporidium hominis
          TU502]
 gi|54659708|gb|EAL38274.1| stable maintenance of chromosomes; Smc4p [Cryptosporidium
          hominis]
          Length = 1316

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 3  NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
           R+ I  + +  F++Y   ++   F    T  VG NG GK+N+++A+ F+     +  R 
Sbjct: 19 PRLIIHKIVLENFKSYGGSKVIGPFHKSFTAIVGPNGSGKSNVIDAMLFVFGKRAKHMRL 78

Query: 59 ASYADVTR 66
             +++  
Sbjct: 79 NKVSELIH 86


>gi|317180010|dbj|BAJ57796.1| hypothetical protein HPF32_0214 [Helicobacter pylori F32]
          Length = 883

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 11/54 (20%)

Query: 5  IKI--KFLNISEFRNYA---------SLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K+  + L +  FRN           +          I VG+N VGK+N+LEA+
Sbjct: 1  MKLYKRVLKLHHFRNLGKNLPTGLLLNSSFEKHGGLVILVGENNVGKSNVLEAL 54


>gi|307132516|ref|YP_003884532.1| hypothetical protein Dda3937_03074 [Dickeya dadantii 3937]
 gi|306530045|gb|ADM99975.1| hypothetical protein Dda3937_03074 [Dickeya dadantii 3937]
          Length = 382

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 10/101 (9%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
            +  L I  F++  SL + F+     + VG NG GK+N++      +  +  R     ++
Sbjct: 12  ALDKLTIKGFKSIRSL-VDFELGSLNVIVGGNGAGKSNLI------AFFKMLRALIDGNL 64

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
            R    S  +      G        ++ ETR        ++
Sbjct: 65  NRYVRDSGGAGDLLFNGR--KITQKMEFETRFGTRGFRFKL 103


>gi|300865700|ref|ZP_07110466.1| ABC transport protein, ATP-binding subunit [Oscillatoria sp. PCC
          6506]
 gi|300336296|emb|CBN55616.1| ABC transport protein, ATP-binding subunit [Oscillatoria sp. PCC
          6506]
          Length = 73

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          K + I  FR   S  +      T+ +G NGVGKT+ LE  S L+
Sbjct: 5  KSITIEGFRRLFSAEVEMRP-LTVMIGANGVGKTSFLEIFSLLA 47


>gi|300769874|ref|ZP_07079754.1| ATPase [Sphingobacterium spiritivorum ATCC 33861]
 gi|300763325|gb|EFK60141.1| ATPase [Sphingobacterium spiritivorum ATCC 33861]
          Length = 571

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 6   KIKFLNISEF---RNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
           KI  + I  +   +N     + F +Q   F G+NG GKT+IL AI
Sbjct: 189 KISEIEIVNYGPIKNLQINEIPFSSQWIFFTGENGTGKTSILRAI 233


>gi|159042004|ref|YP_001541256.1| hypothetical protein Cmaq_1441 [Caldivirga maquilingensis IC-167]
 gi|157920839|gb|ABW02266.1| conserved hypothetical protein [Caldivirga maquilingensis IC-167]
          Length = 307

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           L+I  +R+   + +      TI +G N  GK+++  A  FL+
Sbjct: 2  KLHIKNWRSIEEVEIELKP-VTIIMGPNDAGKSSLAYAPYFLT 43


>gi|119582905|gb|EAW62501.1| SMC5 structural maintenance of chromosomes 5-like 1 (yeast),
           isoform CRA_a [Homo sapiens]
          Length = 529

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 7/130 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  +++  F  Y    +       + VG NG GK++I+ AI     G+         V  
Sbjct: 53  IVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 112

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN      ++V+E    L I  
Sbjct: 113 FVKRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQV 172

Query: 125 -----LVPSM 129
                 +P  
Sbjct: 173 GNLCQFLPQD 182


>gi|83747234|ref|ZP_00944276.1| RecN [Ralstonia solanacearum UW551]
 gi|207744220|ref|YP_002260612.1| dna repair protein [Ralstonia solanacearum IPO1609]
 gi|83726058|gb|EAP73194.1| RecN [Ralstonia solanacearum UW551]
 gi|206595625|emb|CAQ62552.1| dna repair protein [Ralstonia solanacearum IPO1609]
          Length = 569

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 91/254 (35%), Gaps = 35/254 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F    +L L      T+F G+ G GK+ +++A   L+   G R  + A V R
Sbjct: 2   LRSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDA---LALTLGER--ADAAVVR 56

Query: 67  IGSPSFF---------STFARVEGME-GLADISIKLETRDDRSVR-CLQINDVVI--RVV 113
            G+P               A +E  E    D +I L    D + R    IN   +    +
Sbjct: 57  EGAPRADITAAFDTHPQVTAWLEAHELHGDDGAILLRRTVDAAGRSKAFINGAAVTLAQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNR 171
            E+ + L       +   +    +   RR LD      D       R   ++ ++R    
Sbjct: 117 REVGEQLVDIHGQHAHQLLLKTDAQ--RRLLDAHAGLEDEVRVVGERYRAWQAVVR---- 170

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            L E     S  + +E +  E        +V  +  L+    E+ ++    H +LS    
Sbjct: 171 -LREAAEQQSREAQLERERVE-------WQVNELQKLAPQPGEW-EEVQAEHHRLSHAAS 221

Query: 232 LDGKFDQSFCALKE 245
           L      +   L E
Sbjct: 222 LIEGTRAALDTLSE 235


>gi|148258576|ref|YP_001243161.1| hypothetical protein BBta_7392 [Bradyrhizobium sp. BTAi1]
 gi|146410749|gb|ABQ39255.1| hypothetical protein BBta_7392 [Bradyrhizobium sp. BTAi1]
          Length = 874

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 67/197 (34%), Gaps = 24/197 (12%)

Query: 174 TEGYFDSSWCSSI-EAQMAELGVKINIARVEMINAL----SSLIMEYVQKENFPHIKLSL 228
            +G  D  W   +    +A++       R++ I A+           +  ++    +  +
Sbjct: 530 RDGLSDRKWLGVVKTDVLAQID------RLKAIEAIDKASKDTATNKITTQSARIAQALV 583

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
           T  L G+F      L          G  ++    +T  G     + +            S
Sbjct: 584 TNRLRGRFAIEVDKLG-------VAGLAIELQQAKTTAGVPFFQVRLINKPNEPVGKVLS 636

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIF 346
            GE + V +  FLA      +T      ++ D+  + LD   R+ +   + + G   Q+ 
Sbjct: 637 EGEHRCVALAAFLAEL----STIDAQSAIVFDDPVSSLDHLHRDKVAARLAEAGQTRQVI 692

Query: 347 MTGTDKSVFDSLNETAK 363
           +   D +    L+E  +
Sbjct: 693 VFTHDMAFLLLLDEACR 709


>gi|219666173|ref|YP_002456608.1| SMC domain protein [Desulfitobacterium hafniense DCB-2]
 gi|219536433|gb|ACL18172.1| SMC domain protein [Desulfitobacterium hafniense DCB-2]
          Length = 395

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 7  IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          IK L ++   ++   +  +  ++   + VG NG GK+N+++AIS L
Sbjct: 10 IKELKLANLLSFGSETTDIQLNS-LNVVVGPNGSGKSNLIDAISLL 54


>gi|116670079|ref|YP_831012.1| DNA repair protein RecN [Arthrobacter sp. FB24]
 gi|116610188|gb|ABK02912.1| DNA replication and repair protein RecN [Arthrobacter sp. FB24]
          Length = 579

 Score = 44.9 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 67/217 (30%), Gaps = 33/217 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L +          L      ++  G+ G GKT ++ A+  L   R      
Sbjct: 1   MLEELRIRDLGV-----ITDATLPLGPGLSVVTGETGAGKTMVVTAVGLLLGARS----- 50

Query: 61  YADVTRIGSPS------------------FFSTFARVEGMEGLADISIKLETRDDRSVRC 102
            A   R G+ S                       A VE  +G A++ +      D   R 
Sbjct: 51  DAGAVRSGAKSASAEAVLKLDAGHAAVLRALEAGAEVEEFDGGAELILARRLGADGRSRA 110

Query: 103 LQIND-VVIRVVDELNKHLRISWLVPSMDRIFSGLSMER---RRFLDRMVFAIDPRHRRR 158
                   + V+ E+ + L +        R+  G   +R    +F    +      ++  
Sbjct: 111 YLGGRAAPVGVLAEIGESLVVVHGQSDQIRL-KGALAQRGALDKFAGDTLAGPLGTYQAL 169

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
              ++      + L            S+E  +AE+  
Sbjct: 170 YSHWKASQAELDALRGAARDRLREAESLEIALAEIDE 206


>gi|331674055|ref|ZP_08374817.1| DNA repair protein RecN [Escherichia coli TA280]
 gi|331068794|gb|EGI40187.1| DNA repair protein RecN [Escherichia coli TA280]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 86/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + F+  +    L  +  + +  D R     ++     R    +N       
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLE-ENQLEDGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+         
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKPEHQKFLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
               + + L  +   AR ++ +     +  + Q       +  L  +   + ++      
Sbjct: 148 GYANETSLL--QEMTARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|207721679|ref|YP_002252118.1| dna repair protein [Ralstonia solanacearum MolK2]
 gi|206586841|emb|CAQ17426.1| dna repair protein [Ralstonia solanacearum MolK2]
          Length = 569

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 92/254 (36%), Gaps = 35/254 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F    +L L      T+F G+ G GK+ +++A   L+   G R  + A V R
Sbjct: 2   LRSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDA---LALTLGER--ADAAVVR 56

Query: 67  IGSPSFF---------STFARVEGME-GLADISIKLETRDDRSVR-CLQINDVVI--RVV 113
            G+P               A +E  E    D +I L    D + R    IN   +    +
Sbjct: 57  EGAPRADITAAFDTHPQVTAWLEAHELHGDDGAILLRRTVDAAGRSKAFINGAAVTLAQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNR 171
            E+ + L       +   +    +   RR LD      D       R   ++ ++R    
Sbjct: 117 REVGEQLVDIHGQHAHQLLLKTDAQ--RRLLDAHAGLEDEVRVVGERYRAWQAVVR---- 170

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            L E     S  + +E +  E        +V  ++ L+    E+ ++    H +LS    
Sbjct: 171 -LREAAEQQSREAQLERERVE-------WQVNELHKLAPQPGEW-EEVQAEHHRLSHAAS 221

Query: 232 LDGKFDQSFCALKE 245
           L      +   L E
Sbjct: 222 LIEGTRAALDTLSE 235


>gi|70993434|ref|XP_751564.1| DNA repair protein Rad50 [Aspergillus fumigatus Af293]
 gi|66849198|gb|EAL89526.1| DNA repair protein Rad50 [Aspergillus fumigatus Af293]
          Length = 1312

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  L ++  R++ +     + F    T+ VG NG GKT I+E + + + G
Sbjct: 2  ILSLKLNNVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 51


>gi|312218512|emb|CBX98458.1| similar to nuclear condensin complex subunit Smc4 [Leptosphaeria
           maculans]
          Length = 1492

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 10/113 (8%)

Query: 7   IKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           I +L ++ F++YA    +  F A  +  VG NG GK+N+++++ F+   R    R+   +
Sbjct: 288 ITWLVLNNFKSYAGRQEVGPFHASFSAVVGPNGSGKSNVIDSLLFVFGFRASKMRQGKLS 347

Query: 63  DVTRIGSPSFFSTFARVEGMEGLA------DISIKLETRDDRSVRCLQINDVV 109
            +           F  VE               +  +++   S R  + N   
Sbjct: 348 ALIHNSFAYPDLDFCEVEVHFQEVKDLPAGGCEVIPDSQLVISRRAFKNNSSK 400


>gi|331654072|ref|ZP_08355072.1| DNA repair protein RecN [Escherichia coli M718]
 gi|331047454|gb|EGI19531.1| DNA repair protein RecN [Escherichia coli M718]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 86/251 (34%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + F+  +    L  +  + +  D R     ++     R    +N       
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLE-ENQLEDGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H               +LLT+         
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAH-------------QLLTKPEHQKFLLD 147

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
               + + L  +   AR ++ +     +  + Q       +  L  +   + ++      
Sbjct: 148 GYANETSLL--QEMTARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|291613517|ref|YP_003523674.1| DNA repair protein RecN [Sideroxydans lithotrophicus ES-1]
 gi|291583629|gb|ADE11287.1| DNA repair protein RecN [Sideroxydans lithotrophicus ES-1]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L I +F    +L L F A  T   G+ G GK+ +++A+S     RG      A + R
Sbjct: 2   LKNLIIRDFVIVDTLELDFSAGFTALTGETGAGKSILIDALSLALGERG-----DAGMVR 56

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
            G           + GM  L     + E   D  V  L+
Sbjct: 57  SGCEKAEIGAEFDIAGMPQLQSWLREQELEGDEGVCLLR 95


>gi|221198160|ref|ZP_03571206.1| SMC domain protein [Burkholderia multivorans CGD2M]
 gi|221208349|ref|ZP_03581352.1| SMC domain protein [Burkholderia multivorans CGD2]
 gi|221171762|gb|EEE04206.1| SMC domain protein [Burkholderia multivorans CGD2]
 gi|221182092|gb|EEE14493.1| SMC domain protein [Burkholderia multivorans CGD2M]
          Length = 392

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +  L I+ +R+   L +   A  T+  G NG GK+++  A+  L+
Sbjct: 3  ALTTLAIANYRSLRELIVPLAA-LTVVTGPNGSGKSSVYRALRLLA 47


>gi|148655869|ref|YP_001276074.1| SMC domain-containing protein [Roseiflexus sp. RS-1]
 gi|148567979|gb|ABQ90124.1| SMC domain protein [Roseiflexus sp. RS-1]
          Length = 906

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 79/275 (28%), Gaps = 31/275 (11%)

Query: 21  LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-VTRIGSPSFFSTFARV 79
           + L F  +  + VG  GVGK+ ILE + F+     F    Y + +      S       +
Sbjct: 296 VDLTFSPELNVLVGGRGVGKSAILETVRFVLDLEAFSPTEYRERLVEHALGSGGKAILTL 355

Query: 80  -EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE-LNKHLRISWLVPSMDRIFSGLS 137
            + +    +   ++E     + R  +    V  +  E L +     +         + + 
Sbjct: 356 CQAVRPGVEREFRIERVLGEAPRVFEGERAVQLLPREVLGEREIPLFFGQREMYEVTQVP 415

Query: 138 MERRRFLDRMVF--------AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQ 189
             RRR LD ++          +         +   ++  R   L +          IE Q
Sbjct: 416 ALRRRLLDAIIGRESDQQRRQVKKLEEEARRNMRAIL-ERQERLAQREDLEKRWQEIEHQ 474

Query: 190 MAEL------------------GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
           +A                      ++  AR +  +   S   E+ Q+ +           
Sbjct: 475 VALYRQYGIAQKLQEATALTRDAERLRQAREQF-DQARSDWHEFRQRLSERWASALSRLG 533

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
             G    +         + L +          T +
Sbjct: 534 QAGSAQAALLQEAARLVRHLRETLDGSLQQGETSL 568


>gi|89095738|ref|ZP_01168632.1| hypothetical protein B14911_03374 [Bacillus sp. NRRL B-14911]
 gi|89089484|gb|EAR68591.1| hypothetical protein B14911_03374 [Bacillus sp. NRRL B-14911]
          Length = 98

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
           IK + I+ FR+Y  +         + +G N  GK+N++
Sbjct: 5  HIKQIEIAGFRSYKEVIFDHLGSINLLIGPNNAGKSNLI 43


>gi|331005322|ref|ZP_08328709.1| DNA repair protein RecN [gamma proteobacterium IMCC1989]
 gi|330420861|gb|EGG95140.1| DNA repair protein RecN [gamma proteobacterium IMCC1989]
          Length = 557

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 99/283 (34%), Gaps = 44/283 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I+ F     L L      T   G+ G GK+ +L+A   L+   G R  + AD  R
Sbjct: 2   LTHITINNFTLVEHLDLDLKTGMTAITGETGTGKSILLDA---LAMTLGER--ADADRVR 56

Query: 67  IGS-----------PSFFSTFARVEGMEGLADISIKLETRDDRSVR-----CLQINDVVI 110
            GS               S  + +   +   D S + E    R+V         IN   +
Sbjct: 57  FGSKRADITATFSLDDLASAKSWLIKNDLSHDESHENECLLRRTVTAEGRSRCFINGQPV 116

Query: 111 --RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE--RLM 166
             + V  L + L       +   + S  + +R   L        P  ++    ++  + +
Sbjct: 117 TLQQVRALGELLIDIHSQHAHQSLLSKQTHQR---LLDEFAQHQPLVKKVKQTYQEWQSL 173

Query: 167 --------------RGRNRLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSL 211
                         + R +LL     + +     E ++++L   +  +   ++I   S  
Sbjct: 174 HSTLVSLRDNADETKARYQLLHYQVEELNQLDLTEGELSKLEVEQKTLDSADIIIHKSQQ 233

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
           + EY   E    ++ SL+  +    D +  ++    A++L + 
Sbjct: 234 LAEYCDNEEHG-LQPSLSQAIRLLGDINPKSMALSNAEQLLNN 275


>gi|312134983|ref|YP_004002321.1| SMC domain-containing protein [Caldicellulosiruptor owensensis OL]
 gi|311775034|gb|ADQ04521.1| SMC domain protein [Caldicellulosiruptor owensensis OL]
          Length = 857

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 91/287 (31%), Gaps = 43/287 (14%)

Query: 5   IKIKFLNISEFRNYASL--RLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFR--RA 59
           ++  FL +  F++Y      + F   +    +G NG GK++I EAI++   G   R    
Sbjct: 1   MRPLFLRVENFKSYKDTQNEIDFSNIKVACIIGKNGNGKSSIAEAIAWALFGEFERLQTG 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ------------IND 107
               V      +    + +VE    L     K+  R DR  +               IN+
Sbjct: 61  KRGKVAETEYINSHRDYMQVEFEFELNKTIYKVVRRLDRKGKKYLSLFVKKGDSLIPINE 120

Query: 108 VVIR----VVDELNKHLRISWLVPSMD------RIFSGLSMERRRFLDRMVFAIDPRHRR 157
                    +  +       +L  +                +RR  L +++         
Sbjct: 121 ATYTQTQVKLQNILGIDFNVFLHSAYLSQKRTEDFLLSSPEDRREVLAKIL--------- 171

Query: 158 RMIDFERLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIA--RVEMINALSSLIME 214
            +  ++R+    N L  E   +          ++ E    ++       ++  L    + 
Sbjct: 172 NLSVYDRI----NELAKEKRKEIKVLLDIKNREIDEENKILSEEESIKSLVADLEKKRIT 227

Query: 215 YVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
              + N    +L+       + +Q    L ++  + +   RK D + 
Sbjct: 228 IEAELNGLRNRLNAFISQRSEIEQKLDILNQKKNEMIELQRKADEIR 274


>gi|260893592|ref|YP_003239689.1| SMC domain protein [Ammonifex degensii KC4]
 gi|260865733|gb|ACX52839.1| SMC domain protein [Ammonifex degensii KC4]
          Length = 445

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 96/328 (29%), Gaps = 77/328 (23%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR----------G 55
           KI+ + +  F+++    +      T+ VG++  GK+ ++ A+ +L   R           
Sbjct: 3   KIRRIILENFQSHRYTEIELSPTVTVLVGESDRGKSAVVRALRWLFYNRPQGEGLVRAGS 62

Query: 56  FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            R     ++              VE           ++  D +S+R       V + V+E
Sbjct: 63  HRCRVAVEL---------EDGLLVEREREGKTNRYCIKYPDGKSLRLESPGRSVPKEVEE 113

Query: 116 LNKHLRISWLVPSMDR----------IFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
           L      S    S++           +       R + + ++  A           F+R 
Sbjct: 114 LTGIKPYSIGNQSLELHLAHQLDPPFLLRESPSVRAQVIGQIAGA---------DLFQRA 164

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
            +     L E         S+E  +A L  KI+                   +E  P ++
Sbjct: 165 AK---AALREQSQWQGRIKSLEESVAALRKKIS-----------------PLQEELPQLE 204

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
             L    +          +E  A+ L    K + + R        +   +    +  +  
Sbjct: 205 EKLKTVRE--LVNGVLKAEERRAELLCLKEKRERLRR-------EAAFFMSALARLPSEE 255

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGF 313
                     ++   LA    +    G 
Sbjct: 256 ----------ILAAKLAELEELERRYGQ 273


>gi|168789518|ref|ZP_02814525.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC869]
 gi|261227498|ref|ZP_05941779.1| recombination and repair protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255692|ref|ZP_05948225.1| recombination and repair protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189370855|gb|EDU89271.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC869]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|154502464|ref|ZP_02039524.1| hypothetical protein RUMGNA_00277 [Ruminococcus gnavus ATCC 29149]
 gi|153796860|gb|EDN79280.1| hypothetical protein RUMGNA_00277 [Ruminococcus gnavus ATCC 29149]
          Length = 557

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 86/274 (31%), Gaps = 37/274 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L + +      + + F     I  G+ G GK+ IL +++    GR      
Sbjct: 1   MLQNLHVKNLALID-----EVEVDFGPGLNILTGETGAGKSIILGSVNLALGGR-----Y 50

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            AD+ R G+          +E  E +  +  +++   +  +  L    +  R V ++N  
Sbjct: 51  NADMLRKGARFGLVELMFSIENQELIRQLE-EMDIFPEDGMLILSRKLMEGRSVSKINGE 109

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
                ++  +  +                      H       +RL+  RN L     + 
Sbjct: 110 TVTMGVLRDVASLLID-------------IHEQHEH-------QRLLNKRNHLTFLDVYA 149

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINAL-SSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                  + +MA        A  E    L +S + E  +++     +  L          
Sbjct: 150 KEQVEKPKQKMALA----YRAYQEYSRRLEASGMEEKERRKEIDLTEYELHEIESAHLRM 205

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
                 E   +++   + + S   +T       D
Sbjct: 206 GEDEDLESLYQRMTQSKDLTSAVAQTYQYTSEDD 239


>gi|326334347|ref|ZP_08200561.1| SMC domain protein [Capnocytophaga sp. oral taxon 338 str. F0234]
 gi|325693506|gb|EGD35431.1| SMC domain protein [Capnocytophaga sp. oral taxon 338 str. F0234]
          Length = 352

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 51/349 (14%), Positives = 102/349 (29%), Gaps = 61/349 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  ++I  F++   + L  +      +G NG GK+N +    FL+     R  +Y+   R
Sbjct: 2   INSIHIEGFKSIKKIALPLNP-INTLIGANGAGKSNFISFFKFLNNLYEKRLGNYSR--R 58

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+ +         G +    I +K+E     +  C     +       L       +  
Sbjct: 59  KGAENLL-----YFGSKTTQHIYLKIEFSHTNAYEC----QLSPTSDGTLFIDYENIFFN 109

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
                + +       +   + +      + R   ++       N  L +    +   S  
Sbjct: 110 NERKNLSTNSRESVLKDRQQDIAQYVGGYMRAFKNYHFHDTSENAPLRKSSLLTDNLSLR 169

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK-- 244
           +                                N P     L       F+Q    +K  
Sbjct: 170 DD-----------------------------GGNLPSFLYYLQEKHPFHFEQIEAVIKTV 200

Query: 245 EEYAKK--LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
             Y ++  L   R  DS+ +         D+  +         H S G  + V +   L 
Sbjct: 201 APYFERFDLHPDRLNDSIIQLEWRAQQSPDIPFN-------STHFSDGTLRFVALATLLM 253

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTG 349
              L         ++++DE    L     N L  ++    + SQ+ ++ 
Sbjct: 254 QPEL-------PKVIIIDEPELGLHPFAINVLAGLIRKASVKSQVIIST 295


>gi|301791021|ref|XP_002930509.1| PREDICTED: structural maintenance of chromosomes protein 4-like
           [Ailuropoda melanoleuca]
          Length = 1288

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|302848078|ref|XP_002955572.1| structural maintenance of chromosomes protein 1 [Volvox carteri
          f. nagariensis]
 gi|300259195|gb|EFJ43425.1| structural maintenance of chromosomes protein 1 [Volvox carteri
          f. nagariensis]
          Length = 1169

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          IK L +  F++Y    R+      T  +G NG GK+N+++AISF
Sbjct: 13 IKRLEVENFKSYKGHHRIGPFVSFTAVIGPNGSGKSNLMDAISF 56


>gi|291440511|ref|ZP_06579901.1| DNA repair protein recN [Streptomyces ghanaensis ATCC 14672]
 gi|291343406|gb|EFE70362.1| DNA repair protein recN [Streptomyces ghanaensis ATCC 14672]
          Length = 449

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 10/70 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     + A +
Sbjct: 1  MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADAAL 50

Query: 65 TRIGSPSFFS 74
           RIG+ +   
Sbjct: 51 VRIGARNAVV 60


>gi|225175474|ref|ZP_03729469.1| ABC transporter related protein [Dethiobacter alkaliphilus AHT 1]
 gi|225169226|gb|EEG78025.1| ABC transporter related protein [Dethiobacter alkaliphilus AHT 1]
          Length = 301

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 12/81 (14%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR---NALFRIVTDIGSQ 344
           STG+++ + + + +AH            +++LDE +A LD   R   + + R + D G+ 
Sbjct: 132 STGQKRRLALALAVAH---------NPKLVILDEPTAGLDVQSRVTLHQVLRELRDAGTT 182

Query: 345 IFMTGTDKSVFDSLNETAKFM 365
           I ++  D +  +SL +    M
Sbjct: 183 IILSTHDMAEVESLADRVAIM 203


>gi|307152122|ref|YP_003887506.1| ATPase-like protein [Cyanothece sp. PCC 7822]
 gi|306982350|gb|ADN14231.1| ATPase-like protein [Cyanothece sp. PCC 7822]
          Length = 368

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 13/124 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-----SPGRGFRRASY 61
           +K + I  FR + +  L    Q  +F+G NG GK+ + E +  L       G+  +    
Sbjct: 2   LKRIYIDNFRCFVNFELSL-RQINLFMGLNGTGKSTVFEVLRKLQAFITGEGQIHQIFKL 60

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           AD T        +    +EG EG     + +E   +       IN   I          R
Sbjct: 61  ADFTIWQKLPLQTFELEIEGNEGNYKYELAIEHNQE-------INKARIHYKRLFFDGNR 113

Query: 122 ISWL 125
           +   
Sbjct: 114 LIKF 117


>gi|160934645|ref|ZP_02082031.1| hypothetical protein CLOLEP_03518 [Clostridium leptum DSM 753]
 gi|156866098|gb|EDO59470.1| hypothetical protein CLOLEP_03518 [Clostridium leptum DSM 753]
          Length = 608

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 53/282 (18%), Positives = 96/282 (34%), Gaps = 49/282 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KIK +  ++FRN+ + +       +   G NG GKT +   I +   G  +      + 
Sbjct: 7   MKIKGVTFTDFRNHKAPQSYTFGDISYITGHNGTGKTTMAHGICYALYGVSYYGEQKIER 66

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
                 +            G     I+  + D  +   L ++   +R  D          
Sbjct: 67  LMNEKATGTQVQLDFTDQNGTTHTLIRNRSGDKTA---LLLDGYTVRQGD---------- 113

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
               +DRIF     ++  FL       +P +          +  + R L   Y      +
Sbjct: 114 ----IDRIF----CDKETFLSM----FNPTYLTER------LGEKGRPLILKYLQPVSAN 155

Query: 185 SIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQKENFPHIKLS------LTGFLDGKF 236
           ++  QM+E          E ++   L++   E   KE    ++ +      L G +D   
Sbjct: 156 AVLEQMSE-------TYREYLDGIDLNTFPPEAKLKEFRGAVRQAEEQEAYLQGNIDSFE 208

Query: 237 DQSFCA---LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
           + S  A   L E YA K    +K   +S +   G    DL +
Sbjct: 209 EASRTAEQKLSELYADKAAIEKKRKVLSDKQFEGIEVEDLSI 250


>gi|47224584|emb|CAG03568.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1088

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 106/333 (31%), Gaps = 58/333 (17%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           +K + +  F  +A+L    F +     VG NG GK+ IL  +     G      R +S  
Sbjct: 6   VKSITLKNFMCHANLGPFAFGSNVNFVVGKNGSGKSAILTGLIVALGGNAQATNRGSSLK 65

Query: 63  DVTRIGSPSFFST-----FARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDEL 116
              + G  +   +       R     G+   +I ++ R  R  +R  ++ +   R++   
Sbjct: 66  GFVKEGESAADVSVTLNNVGRDAYKPGVYGQTIVVDQRITREGIRSYKLKNNSGRIISTK 125

Query: 117 NKHL-------------RISWLVPSMDRIF---SGLSMERRRFLD-RMVFAIDPRHRRRM 159
            + L              ++ L   M + F    G++ + + F+    +  +        
Sbjct: 126 KEDLLAILDNFNIQVNNPVTVLTQEMSKYFLHSKGVAEKYKFFMKATQLEQMKDDFVHIK 185

Query: 160 I----------DFERLMRG-RNRLLTEGYFDSSW---------CSSIEAQMA-ELGVKI- 197
                       +   ++  R   L +    +S             ++ QMA  L  ++ 
Sbjct: 186 STKSVTVDKVDQYSECLKDLRQDYLEKEDRYNSLASVNEMHTKLEELQKQMAWALVAEVQ 245

Query: 198 ---------NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
                      +    I+     + E+ +K      K   +        Q    L+ + A
Sbjct: 246 TELKPMKEKLESDRRAIDKFDEKVEEWKKKVEVAEGKQKQSQEQLDGISQQISELQSKCA 305

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
               + +K ++  +   +  HR    +   +K 
Sbjct: 306 VLKAELQKRNANLKSCEVTVHRHKANIRDLEKD 338


>gi|189346160|ref|YP_001942689.1| DNA repair protein RecN [Chlorobium limicola DSM 245]
 gi|189340307|gb|ACD89710.1| DNA repair protein RecN [Chlorobium limicola DSM 245]
          Length = 568

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 19/117 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L + F     I  G+ G GK+ ++ A+S +   R       +D+ R
Sbjct: 2   LSSLYIRNFALIRELTVEFSRGLCIITGETGAGKSMLIGALSLVLGERS-----SSDLVR 56

Query: 67  IGSPSFF-----------STFARVE--GMEGLADISIKLETRDDRSVRCLQINDVVI 110
            G                   A +E  G+E   D  ++ E       RC  IND   
Sbjct: 57  SGENKAIIEAMLCGQLPERLGALLEEAGIECTNDTLLRREISVSGQSRCF-INDTPC 112


>gi|331664181|ref|ZP_08365090.1| DNA repair protein RecN [Escherichia coli TA143]
 gi|331058638|gb|EGI30616.1| DNA repair protein RecN [Escherichia coli TA143]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|302344590|ref|YP_003809119.1| DNA repair protein RecN [Desulfarculus baarsii DSM 2075]
 gi|301641203|gb|ADK86525.1| DNA repair protein RecN [Desulfarculus baarsii DSM 2075]
          Length = 568

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          + +L I  F     L L      T+  G+ G GK+ IL A+  +   R     +  D+ R
Sbjct: 2  LSYLRIENFALIDRLELELSPGLTVLSGETGAGKSIILAAMGLILGQR-----AAGDLVR 56

Query: 67 IGSPSFF 73
           G+    
Sbjct: 57 QGAEQAV 63


>gi|300819936|ref|ZP_07100118.1| DNA repair protein RecN [Escherichia coli MS 107-1]
 gi|300527477|gb|EFK48539.1| DNA repair protein RecN [Escherichia coli MS 107-1]
          Length = 569

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 18  LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 72

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 73  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 132

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 133 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 192

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 193 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 235


>gi|294636958|ref|ZP_06715281.1| RecF protein [Edwardsiella tarda ATCC 23685]
 gi|291089827|gb|EFE22388.1| RecF protein [Edwardsiella tarda ATCC 23685]
          Length = 556

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + ++ + +  FR    + L  D   T+ +G+N  GK+++L+A++          +   D+
Sbjct: 1  MYLERIEVVGFRGINRISLSLDEN-TVLIGENAWGKSSLLDALTLCL-------SPQNDL 52

Query: 65 TRIGSPSFF 73
           R  +  F+
Sbjct: 53 YRFEAHDFY 61


>gi|253999026|ref|YP_003051089.1| chromosome segregation protein SMC [Methylovorus sp. SIP3-4]
 gi|253985705|gb|ACT50562.1| chromosome segregation protein SMC [Methylovorus sp. SIP3-4]
          Length = 1173

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L ++ F+++     L    Q    VG NG GK+N++E+I ++   S  +  R  S
Sbjct: 1   MRLTHLKLAGFKSFVDPTTLHIHGQRVGVVGPNGCGKSNVMESIRWVLGESSAKEMRGDS 60

Query: 61  YADVTRIGSPSFF-STFARVE----------GMEGLADISIKLETRDDR-SVRCLQINDV 108
              V   GS +    + A VE          G E      I ++   +R       IN+ 
Sbjct: 61  MDAVIFNGSANRKPISRASVELIFDNSLGGAGGEWAQYAEISVKRVIERDKGSSYYINNS 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            +R  D         L           ++ RI      E R FL+
Sbjct: 121 AVRRRDVADLFLGTGLGGRAYAIIGQNTISRIIEAKPEEMRVFLE 165



 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 31/166 (18%)

Query: 203  EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM----- 257
            E I AL  + +  VQ+      +           DQ+   L++   +   + R       
Sbjct: 963  EEIEALGPVNLAAVQELESEKERKQYLDSQATDLDQAIQTLEDAIRRIDRETRSRLQQTF 1022

Query: 258  DSMSRR------TLIGPHRSDLIVDYCD---------------KAITIAHGSTGEQKVVL 296
            D  +R       +L G  ++ L +   +               K  TI   S GE+ +  
Sbjct: 1023 DEANRHFGELFASLFGGGQARLELLGDEILDTGMQVFAQPPGKKNSTIHLLSGGEKALTA 1082

Query: 297  VGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
            + +  A  RL       AP  L+DE+ A LD+        +V  + 
Sbjct: 1083 LALVFALFRL-----NPAPFCLMDEVDAPLDDSNTERFCAMVKKMS 1123


>gi|183599795|ref|ZP_02961288.1| hypothetical protein PROSTU_03303 [Providencia stuartii ATCC 25827]
 gi|188022059|gb|EDU60099.1| hypothetical protein PROSTU_03303 [Providencia stuartii ATCC 25827]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 74/213 (34%), Gaps = 38/213 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F     L + F +  T   G+ G GK+  ++A+      RG      A++ R
Sbjct: 2   LTQLTINNFAIVRDLEIDFRSGMTTITGETGAGKSIAIDALGLCLGSRG-----DANMVR 56

Query: 67  IGSP--SFFSTFARVEG-----------MEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + F+ V+            ++  ++  ++     D   R   IN   V + 
Sbjct: 57  PGAQRADLCARFSLVDADMAAKWLIEHELDNQSECLLRRTITLDGRSRGF-INGTAVPLS 115

Query: 112 VVDEL--------NKHLRISWLVPSMDR-IFSGLSMERRRFLDR-MVFAIDPRHRRRMID 161
            + EL         +H     L  +  + +    + ++ RFL     +       +++  
Sbjct: 116 QLRELGALLIQIHGQHAHQLLLDNNHQKSLLDAYANQQERFLQMKHAWQKWHDSCQQLAM 175

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
           F++ M+ R                   ++AE  
Sbjct: 176 FQKQMQER-------ESRQQLLDYHLKELAEFS 201


>gi|167998859|ref|XP_001752135.1| condensin complex component SMC4 [Physcomitrella patens subsp.
           patens]
 gi|162696530|gb|EDQ82868.1| condensin complex component SMC4 [Physcomitrella patens subsp.
           patens]
          Length = 1283

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
            R+ IK + +  F++YA  +    F    +  VG NG GK+N+++A+ F+     +  R 
Sbjct: 20  PRLFIKKMVLENFKSYAGKQYIGPFHKCFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRL 79

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLA 86
              +++    +       A V       
Sbjct: 80  NKVSELIHNSTNHQNLDKASVSVHFQEI 107


>gi|148240866|ref|YP_001226253.1| ATPase involved in DNA repair RecN [Synechococcus sp. WH 7803]
 gi|147849405|emb|CAK24956.1| ATPase involved in DNA repair RecN [Synechococcus sp. WH 7803]
          Length = 562

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 17/159 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-------SPG 53
           M   ++++ + + +     SL L FD   ++  G+ G GK+ +L+A+  +       +  
Sbjct: 1   MLTGLRLQNIALID-----SLDLAFDQGFSVLTGETGAGKSILLDALDAVLGGMQASAAA 55

Query: 54  RGFRRASYADVT----RIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
           R  R      +     R+G+    +    +++  E    +S +   +DDR     ++N V
Sbjct: 56  RLLRSGCDRALIEASFRVGASGQRWLERHQLDDGEPELVVSREWRRQDDRLSSRSRLNGV 115

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147
           V+     L     +  L             ++RR+LDR+
Sbjct: 116 VVNRQQLLELRPLLIDLTVQGQTQQLARPGQQRRWLDRL 154


>gi|154246976|ref|YP_001417934.1| ATP-dependent endonuclease family protein [Xanthobacter
          autotrophicus Py2]
 gi|154161061|gb|ABS68277.1| ATP-dependent endonuclease family protein [Xanthobacter
          autotrophicus Py2]
          Length = 598

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +KI  + I  FR   S +LV    H + +GDN  GK+++ EAI  
Sbjct: 1  MKIFSVGIENFRGIQSAKLVL-PDHAVLIGDNNTGKSSVFEAIDL 44


>gi|332527435|ref|ZP_08403489.1| SMC domain-containing protein [Rubrivivax benzoatilyticus JA2]
 gi|332111844|gb|EGJ11822.1| SMC domain-containing protein [Rubrivivax benzoatilyticus JA2]
          Length = 403

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 2  TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          T R  +K + +  +++     +   AQ T  VG N  GK+N ++A+  
Sbjct: 4  TPRTFLKRVILRNYKSIGHCDVPLRAQ-TYLVGANASGKSNFVDALHL 50


>gi|315095207|gb|EFT67183.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
 gi|327328834|gb|EGE70594.1| hypothetical protein HMPREF9341_00304 [Propionibacterium acnes
          HL103PA1]
          Length = 868

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            R   P   S    VE  
Sbjct: 60 KVRTAQPYGTSLQVVVEAE 78


>gi|314965978|gb|EFT10077.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
          Length = 868

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            R   P   S    VE  
Sbjct: 60 KVRTAQPYGTSLQVVVEAE 78


>gi|317133766|ref|YP_004089677.1| SMC domain protein [Ruminococcus albus 7]
 gi|315450228|gb|ADU23791.1| SMC domain protein [Ruminococcus albus 7]
          Length = 597

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +  K + I  F     L      +  + +G NG GKT  L+A+ +   G   R    +++
Sbjct: 1  MNFKNICIENFGGITHLE-TIPKRVNVIIGPNGHGKTTFLKAVKYGLVGSQTR----SEL 55

Query: 65 TRIGS 69
           + G+
Sbjct: 56 IKDGA 60


>gi|284031703|ref|YP_003381634.1| DNA repair ATPase-like protein [Kribbella flavida DSM 17836]
 gi|283810996|gb|ADB32835.1| ATPase-like protein involved in DNA repair [Kribbella flavida DSM
          17836]
          Length = 926

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISF 49
          +++  L +  FR      +   +   T+ VGDN VGK++++EA + 
Sbjct: 1  MRLHSLTLRNFRGVTDRTVRLPSIGTTVVVGDNEVGKSSLVEAFAL 46


>gi|219851991|ref|YP_002466423.1| DNA sulfur modification protein DndD [Methanosphaerula palustris
           E1-9c]
 gi|219546250|gb|ACL16700.1| DNA sulfur modification protein DndD [Methanosphaerula palustris
           E1-9c]
          Length = 677

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 8/189 (4%)

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVK---INIARVEMINALSSLIMEYVQKENFPHIKL 226
           N L       S      + ++ E   +   I   R+++   L  +     + +    + L
Sbjct: 449 NELSKHLGELSEKLRVADEKIHEFDSQLKEIERQRLKLDEELQGVKCGSKKMQLAQQVTL 508

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
            L  ++     Q    L +          + D   +  LI  + +  + +    AI    
Sbjct: 509 ILNEYMKELQRQKVSQLSDNILSCFTRLIRKDDYVKDILIDENYAITLYEPDGHAIPKEL 568

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL-FRIVTDIGSQI 345
            S GE+++  V +       ++ T+G     ++D     LD + R  L        G Q+
Sbjct: 569 LSAGEKEIFAVSL----LWGLTLTSGRQLPFIIDTPLGRLDSEHRGNLVMDFFQHAGDQM 624

Query: 346 FMTGTDKSV 354
            +  TD  +
Sbjct: 625 IIFSTDTEI 633



 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 9/58 (15%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDA--------QHTIFVGDNGVGKTNILEAISFLSPG 53
          + +K L +   R +  +  L F             +  G NG GKT + E+I     G
Sbjct: 1  MLLKSLTLENIRIFKGVNTLDFTPVHSSKEQKSIILIGGKNGAGKTTMFESILLCLYG 58


>gi|182415732|ref|YP_001820798.1| ATPase-like protein [Opitutus terrae PB90-1]
 gi|177842946|gb|ACB77198.1| ATPase-like protein [Opitutus terrae PB90-1]
          Length = 336

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  +    F+   + ++       + +G NG GKT+++EA+  L   
Sbjct: 2  IASVAFRRFKALRNAQVRLTP-FNLVLGPNGSGKTSLIEALQHLRTL 47


>gi|158335908|ref|YP_001517082.1| DNA repair protein RecN [Acaryochloris marina MBIC11017]
 gi|158306149|gb|ABW27766.1| DNA repair protein RecN [Acaryochloris marina MBIC11017]
          Length = 594

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +  L I  F    +L L F     +  G+ G GK+ +L+AI  +  G+
Sbjct: 2  LLSLRIENFALIDTLDLTFTDGLNVLTGETGAGKSILLDAIDLILGGK 49


>gi|187930242|ref|YP_001900729.1| SMC domain-containing protein [Ralstonia pickettii 12J]
 gi|187727132|gb|ACD28297.1| SMC domain protein [Ralstonia pickettii 12J]
          Length = 634

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5  IKIKFLNISEFRNYASL--RLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61
          +K++ + +S F+++      +V +   T  +G NG GKT  L+A+    +     RR   
Sbjct: 1  MKLQTIRLSNFQSFGEAPTEVVLED-ITYLIGPNGSGKTAALQALCRLFAFDPSLRRILR 59

Query: 62 AD 63
          +D
Sbjct: 60 SD 61


>gi|118398608|ref|XP_001031632.1| hypothetical protein TTHERM_00773790 [Tetrahymena thermophila]
 gi|89285963|gb|EAR83969.1| hypothetical protein TTHERM_00773790 [Tetrahymena thermophila SB210]
          Length = 1303

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 67/192 (34%), Gaps = 22/192 (11%)

Query: 150  AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209
            A++  +   +  +++      R L E    +     I+  + EL   +     + +  ++
Sbjct: 1073 ALEKNYAEAIARYDQAEERYCRALVELEVKNGLLKDIQEYLEELDKTLINYHKDKMEQIN 1132

Query: 210  SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
              I +  +K                   Q    +K E   +  +GR     + R ++  +
Sbjct: 1133 KCIADTWKKIY-----------------QGQDIVKVEIKAEEAEGRGKKIYNYRIVMFIY 1175

Query: 270  RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
              D       +       S G++ +  + I LA A   +   G   IL LDE + +LD+ 
Sbjct: 1176 --DEKDKDLKEIDMKGRCSAGQKVLASIIIRLALAEAFTMNCG---ILALDEPTTNLDKL 1230

Query: 330  KRNALFRIVTDI 341
                L   + ++
Sbjct: 1231 HAQKLGEQLCEL 1242



 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 7/62 (11%)

Query: 7  IKFLNISEFRNYASL------RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          +K L I   R+Y          + F    T+ +G+NG GK+ I+E +  ++ G  F   S
Sbjct: 4  LKKLGIYGIRSYGDQNSEKYEEIAFFKPLTLILGNNGAGKSTIIECLKLITTG-SFPPNS 62

Query: 61 YA 62
            
Sbjct: 63 DK 64


>gi|120598026|ref|YP_962600.1| ATPase [Shewanella sp. W3-18-1]
 gi|120558119|gb|ABM24046.1| ATPase, possibly involved in inorganic ion transport [Shewanella
           sp. W3-18-1]
          Length = 861

 Score = 44.9 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 102/294 (34%), Gaps = 37/294 (12%)

Query: 76  FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSG 135
            A+ EG+    D+      +    V   ++N  +I     L+  +     +P      S 
Sbjct: 434 IAQFEGVLNELDV-----IKPGLKVGLEKLNQSLINRQAVLSGSV-----LPESLDEISL 483

Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
              +  R +D+ +F       ++  + E + + +   LTE   D ++       +A+   
Sbjct: 484 SHFQALREIDKELFTQIGELEQQSSNNEFVAK-KQARLTELT-DRAY-------VAKHKA 534

Query: 196 KIN--IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
            I   + R +++  L+  I +     +   +   +              LKE + K+L  
Sbjct: 535 NIITNVRRSKIVAKLNK-ISDQCATRSISTLSARIYSQG------VIEPLKESFVKELKS 587

Query: 254 ---GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
               R   ++  R   G  +  L +   ++++     S GEQ+ + +  FL+        
Sbjct: 588 FGFNRFDINVKTRNKAGQQQFKLELANSNESVVGKVASEGEQRCIAIASFLSEM----KA 643

Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGTDKSVFDSLNETA 362
                 +L D+    L       + + +    +  Q+ +   D   +  L E +
Sbjct: 644 DSRRSAVLFDDPVNSLSHQWSAKVAKRLIEESLERQVIVFTHDIVFYKLLLEAS 697


>gi|326391723|ref|ZP_08213246.1| DNA repair protein RecN [Thermoanaerobacter ethanolicus JW 200]
 gi|325992223|gb|EGD50692.1| DNA repair protein RecN [Thermoanaerobacter ethanolicus JW 200]
          Length = 566

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 28/180 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I          + F+    +  G+ G GK+ +++++  L   R  R     D+ R
Sbjct: 2   LLALSIQNVALIDKAEIQFEEGFNVLTGETGAGKSIVIDSVLLLLGSRASR-----DIIR 56

Query: 67  IGSPS------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            G         FF    + + +E L ++ + LE  D      L IN  +        +  
Sbjct: 57  TGEEKAIVEGIFFVDSNKDKIVEILEEVGLSLEEDD-----TLIINREITSSGRSYCRIN 111

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR----RRMIDFERLMRGRNRLLTEG 176
               +VP       G       FL  ++   + +      + +   +     + + L E 
Sbjct: 112 GR--IVPLSFLSKIGA------FLVDILGQHEHQFLLDNTKHLSILDNFGDQKFKSLKEK 163


>gi|307245345|ref|ZP_07527433.1| hypothetical protein appser1_5500 [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|307258758|ref|ZP_07540490.1| hypothetical protein appser11_5560 [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
 gi|306853686|gb|EFM85903.1| hypothetical protein appser1_5500 [Actinobacillus
          pleuropneumoniae serovar 1 str. 4074]
 gi|306867109|gb|EFM98965.1| hypothetical protein appser11_5560 [Actinobacillus
          pleuropneumoniae serovar 11 str. 56153]
          Length = 536

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          I  L+I  +R   ++ L F     +  G NG  K++IL  IS
Sbjct: 2  ITNLDIDHYRKLRNITLSFTPGINLISGTNGTCKSSILHIIS 43


>gi|304310479|ref|YP_003810077.1| hypothetical protein HDN1F_08350 [gamma proteobacterium HdN1]
 gi|301796212|emb|CBL44418.1| conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 365

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +I  L +  +++ A   +    +  + +G NG GK+N++
Sbjct: 9  QITRLVLHGYKSIAECDIQLG-RINVLIGANGAGKSNLI 46


>gi|289191558|ref|YP_003457499.1| hypothetical protein MFS40622_0063 [Methanocaldococcus sp.
           FS406-22]
 gi|288938008|gb|ADC68763.1| hypothetical protein MFS40622_0063 [Methanocaldococcus sp.
           FS406-22]
          Length = 336

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 17/111 (15%)

Query: 5   IKIKFL-NISEFRNYASL--RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           + I  + +I EFR    L   +  D +  I +G N  GKT ILE++      R  R    
Sbjct: 1   MLINEIKSIKEFRGIKKLKESIKLD-KFNILIGKNNSGKTAILESLFLFPHPR--RVYKL 57

Query: 62  A------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
           A      D    G     S   + EG        ++ +   D      +IN
Sbjct: 58  ANNRSVLDFISSGRNGIKSLVYKYEGTA-----ELEFDINLDNKFYKWKIN 103


>gi|251791113|ref|YP_003005834.1| AAA ATPase [Dickeya zeae Ech1591]
 gi|247539734|gb|ACT08355.1| AAA ATPase [Dickeya zeae Ech1591]
          Length = 573

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 1  MTNRI-KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          M N+I K+K ++I  FR  + + L    + TI  G NG  K+ IL
Sbjct: 1  MANKITKLKSIDIKNFRGLSGVSLDIADRITIVCGKNGTSKSTIL 45


>gi|226313175|ref|YP_002773069.1| hypothetical protein BBR47_35880 [Brevibacillus brevis NBRC
          100599]
 gi|226096123|dbj|BAH44565.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 418

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 11 NISEFR-N----YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
           I +FR N    Y ++ + FD+   I VG+NGVGKT IL  + +    +
Sbjct: 4  KIKKFRINKLFGYKNVNIDFDSGVMILVGENGVGKTTILNVLYYTLSTK 52


>gi|222147830|ref|YP_002548787.1| chromosome segregation protein [Agrobacterium vitis S4]
 gi|221734818|gb|ACM35781.1| chromosome segregation protein [Agrobacterium vitis S4]
          Length = 1153

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFTKLRVVGFKSFVEPTEFIIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDRS-VRCLQINDV 108
             DV   G     + +       ++  +  A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNSAEVGLYLDNSDRTAPAAFNDSDEIQVSRRIERENGSVYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR+ L+
Sbjct: 121 EARAKDVQLLFADASTGARSPSMVGQGRIGELIQAKPQARRQLLE 165


>gi|37527769|ref|NP_931114.1| nuclease sbcCD subunit C [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36787205|emb|CAE16285.1| Nuclease sbcCD subunit C [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 1228

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 86/294 (29%), Gaps = 39/294 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           +KI  L +    +     ++ F       +      G  G GKT +L+AI         R
Sbjct: 1   MKILSLRLKNINSLQGEWKIDFTAEPFASSGLFAITGPTGAGKTTLLDAICLALYHETPR 60

Query: 58  ----RASYADVTRIGSPSFFSTFARVEGMEGLADIS----------------IKLETRDD 97
                +    +TR  + S       V+G+   A  S                ++L     
Sbjct: 61  LTISTSQNELMTRHTAESLAEVEFEVKGVAYRAFWSQRRARNQPNGNLQAPKVELALSSS 120

Query: 98  RSVRCLQINDVVIRVVD----ELNKHLRISWLVPSMDRIFSGL-SMERRRFLDRMVFAID 152
             +   +I D   ++++    +  +  +   L       F      ER   L+ +     
Sbjct: 121 GKILADKIQDKKEKIIEITGLDYGRFTKSILLSQGDFAAFLNAQPNERADLLEELTGT-- 178

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
             +        +  +    +L      +S    + A+  +  ++         + L+  I
Sbjct: 179 EIYGILSQQIYQQHKQAQSVLDILQAKASTIDLLTAEQHQQYLEQQQQLTHAESQLNQQI 238

Query: 213 ---MEYVQKENFPHIKLSLTGFLDGKFDQSFCAL--KEEYAKKLFDGRKMDSMS 261
                  Q          L    +    Q+  AL   E   +KL +    +++ 
Sbjct: 239 KTVQHSAQWLTREEELEQLVTENNAILQQAEKALTHAEPQLQKLANSEPAETLR 292


>gi|322513890|ref|ZP_08066969.1| DNA repair protein RecN [Actinobacillus ureae ATCC 25976]
 gi|322120289|gb|EFX92236.1| DNA repair protein RecN [Actinobacillus ureae ATCC 25976]
          Length = 605

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 22/131 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L ++ F     L L  +   ++  G+ G GK+  ++A+S     R       + + R
Sbjct: 50  LTQLTVNNFAIVRHLTLELNEGMSVITGETGAGKSIAIDALSLCLGYRS-----ESSMIR 104

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQIND-VV 109
            G+     T                   +   +   +  ++     +   +    N  + 
Sbjct: 105 NGADKADITATFTMQPTSPAYLWLQQHELLDEDNPQECILRRMINQEGRSKAFVNNRPLP 164

Query: 110 IRVVDELNKHL 120
           I  + EL ++L
Sbjct: 165 ISQLRELGQYL 175


>gi|265766240|ref|ZP_06094281.1| DNA repair protein RecN [Bacteroides sp. 2_1_16]
 gi|263253908|gb|EEZ25373.1| DNA repair protein RecN [Bacteroides sp. 2_1_16]
          Length = 561

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 16/199 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  R+ +  
Sbjct: 2   LRSLYIQNYALIEKLDIRFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRQGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            V   R   S      F     +E   +  ++ E +     R   IND       + EL 
Sbjct: 62  CVIEARFDISAYHMEAFFEENELEYEPECILRREVQSSGKSRAF-INDTPASLTQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR---HRRRMIDFERLMRGRNRLLT 174
           + L           +       +   LD ++   +     +     D+++L +  + L+ 
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLD-ILSHNEEALDVYHHLYQDWKKLSKELDELIV 177

Query: 175 EGYFDSSWCSSIEAQMAEL 193
                 +    I  Q+ +L
Sbjct: 178 LAEQSKTDEDYIRFQLEQL 196


>gi|296137214|ref|YP_003644456.1| ABC transporter related protein [Thiomonas intermedia K12]
 gi|295797336|gb|ADG32126.1| ABC transporter related protein [Thiomonas intermedia K12]
          Length = 252

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 282 ITIAHGSTGEQKVVLVGI----FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
           I     S G Q    +       LA AR          +LLLDE  +HLD     A+ + 
Sbjct: 127 IRAGLHSRGRQSAASLSSGQRQRLALARAWMMQ---PALLLLDEPCSHLDPQASAAILQD 183

Query: 338 VTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371
           V ++ +Q           + +    + +R+ + Q
Sbjct: 184 VQELAAQGITVVLSTHRPEEIALAQRVLRLDHGQ 217


>gi|16329624|ref|NP_440352.1| hypothetical protein slr1048 [Synechocystis sp. PCC 6803]
 gi|1652107|dbj|BAA17032.1| slr1048 [Synechocystis sp. PCC 6803]
          Length = 1006

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 8  KFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          + L +  F +Y  + L F   HT    G NG GK+++LEAI++   G+  R  S  DV  
Sbjct: 4  QQLILKNFLSYQDVSLNFRGLHTACICGSNGAGKSSLLEAITWAIWGKC-RAESEDDVLH 62

Query: 67 IGSPSFFSTFARVEGMEGLADIS 89
           G+      F  +   +    I 
Sbjct: 63 NGTDQVRVDFEFISNNQTYRIIR 85


>gi|117919257|ref|YP_868449.1| hypothetical protein Shewana3_0805 [Shewanella sp. ANA-3]
 gi|117611589|gb|ABK47043.1| conserved hypothetical protein [Shewanella sp. ANA-3]
          Length = 390

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L IS +R    + L    +  +  G NG GK+N+ +A+  L+
Sbjct: 2  LTTLAISNYRTLREIVLPLG-RLNLVTGANGSGKSNLYKALRLLA 45


>gi|332665879|ref|YP_004448667.1| SMC domain-containing protein [Haliscomenobacter hydrossis DSM
          1100]
 gi|332334693|gb|AEE51794.1| SMC domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 701

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNYA-----SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + IK L +  FR Y      +L    D    I  G NG GKTN L A+ +   G
Sbjct: 1  MYIKELELYNFRQYKGNNTINLETEEDKNILIVSGMNGFGKTNFLIALVWCLYG 54


>gi|328953426|ref|YP_004370760.1| DNA repair ATPase [Desulfobacca acetoxidans DSM 11109]
 gi|328453750|gb|AEB09579.1| DNA repair ATPase [Desulfobacca acetoxidans DSM 11109]
          Length = 884

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 74/245 (30%), Gaps = 31/245 (12%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFA 77
              L + F       +G  G GK+ +LE I +    R         + +           
Sbjct: 272 LDGLEIDFSEHLNAVIGGRGTGKSTLLECIRYALELR--------PLAKNAQKQHDEIIR 323

Query: 78  RVEGME-GLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              G E G  +++I+      +     +       V DE       S   P+        
Sbjct: 324 ENLGKEKGRIELTIRSSAMHGKRFLISRRYGESATVRDEFG---NPSAFSPADVL----- 375

Query: 137 SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
                 +    ++ I    + R+    R +   NR              ++ ++ E+  K
Sbjct: 376 -PRIEIYGQNEIYEIAQNPQGRLRLLNRFLDIDNR-------------QLDQRLEEIARK 421

Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +   R  ++    +L     +    P ++  +  F   + D+    +    ++K   GR 
Sbjct: 422 LKDNRKAILQEQENLAQVEDEVSRLPKLQEQVEQFKKLRLDEKLKIIPLLESEKRLSGRV 481

Query: 257 MDSMS 261
            + + 
Sbjct: 482 SEEIE 486


>gi|319899148|ref|YP_004159241.1| DNA repair protein RecN [Bartonella clarridgeiae 73]
 gi|319403112|emb|CBI76670.1| DNA repair protein RecN [Bartonella clarridgeiae 73]
          Length = 555

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 6/120 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I        L + F    ++  G+ G GK+ +L+++S    GRG      A + R
Sbjct: 2   LVQLSIHNIVLIERLDIHFTKGLSVLTGETGAGKSILLDSLSLALGGRG-----DASLVR 56

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G      +    +     +  +  +    D+  +   ++     R    LN  +    L
Sbjct: 57  HGMTHGQVTAIFDIPVSHPVRRLICENGFDDEGDIILRRVQSNDGRSRGFLNDQVISVAL 116


>gi|315105324|gb|EFT77300.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2]
          Length = 868

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDT-STKASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            R   P   S    VE  
Sbjct: 60 KVRTAQPYGTSLQVVVEAE 78


>gi|301026399|ref|ZP_07189843.1| DNA repair protein RecN [Escherichia coli MS 69-1]
 gi|300395546|gb|EFJ79084.1| DNA repair protein RecN [Escherichia coli MS 69-1]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|290510937|ref|ZP_06550306.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
 gi|289775930|gb|EFD83929.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
          Length = 349

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA--DV 64
          +  ++I  F++  S  L      TI  G N  GK+++L+A+  L          Y+  DV
Sbjct: 2  LTQIDIQGFKSLDSASLALSP-LTILTGTNSSGKSSVLQALMLLIK-HSASVNQYSMEDV 59

Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99
           R  +        ++        I IK++  + RS
Sbjct: 60 IRFLADFSVIRNKKINAKF----IKIKVQDSEGRS 90


>gi|289619547|emb|CBI53830.1| putative SMC2 protein [Sordaria macrospora]
          Length = 1179

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           +++  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRVTEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKKKSPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|253564784|ref|ZP_04842240.1| DNA repair protein [Bacteroides sp. 3_2_5]
 gi|251946249|gb|EES86626.1| DNA repair protein [Bacteroides sp. 3_2_5]
          Length = 561

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 16/199 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  R+ +  
Sbjct: 2   LRSLYIQNYALIEKLDIRFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRQGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            V   R   S      F     +E   +  ++ E +     R   IND       + EL 
Sbjct: 62  CVIEARFDISAYHMEAFFEENELEYEPECILRREVQSSGKSRAF-INDTPASLTQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR---HRRRMIDFERLMRGRNRLLT 174
           + L           +       +   LD ++   +     +     D+++L +  + L+ 
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLD-ILSHNEEALDVYHHLYQDWKKLCKELDELIV 177

Query: 175 EGYFDSSWCSSIEAQMAEL 193
                 +    I  Q+ +L
Sbjct: 178 LAEQSKTDEDYIRFQLEQL 196


>gi|190341629|gb|ACE74891.1| RecN [Cronobacter muytjensii]
 gi|190341631|gb|ACE74892.1| RecN [Cronobacter muytjensii]
 gi|190341633|gb|ACE74893.1| RecN [Cronobacter muytjensii]
 gi|190341635|gb|ACE74894.1| RecN [Cronobacter muytjensii]
 gi|190341637|gb|ACE74895.1| RecN [Cronobacter muytjensii]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 92/267 (34%), Gaps = 36/267 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              P+        +  +G   +  ++ + D RS   +    V +  
Sbjct: 57  AGASRADLCARFSLKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       ++R LD         +          M    R 
Sbjct: 117 LRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-STLMAQMAQSYRQ 165

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G L
Sbjct: 166 WHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQL 223

Query: 233 DGKFDQSFCALKE----EYAKKLFDGR 255
                Q+   L +        +L+  R
Sbjct: 224 LSTSQQALNLLADAEDANLQSQLYSAR 250


>gi|224535476|ref|ZP_03676015.1| hypothetical protein BACCELL_00339 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522942|gb|EEF92047.1| hypothetical protein BACCELL_00339 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 554

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 84/256 (32%), Gaps = 38/256 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F A  ++  G+ G GK+ IL AI  L    +  +  R+ +  
Sbjct: 2   LRSLYIQNYALIEKLDISFGAGFSVITGETGAGKSIILGAIGLLLGQRAEVKAIRQGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            V   R   S      F     +E   +  ++ E       R   IND       + EL 
Sbjct: 62  CVIEARFDISAYGMEPFFEDNELEYEEECILRREVYASGKSRAF-INDTPASLVQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           + L           +       +   LD ++   D     ++  ++ L R       +  
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLD-ILSHND----EQLSTYQSLYRE----WKQAQ 169

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
                      ++A+L     IAR E   A    I    Q E      LS+    + + +
Sbjct: 170 ----------QELADL-----IARAEQNKADEDYIR--FQLEQLEEANLSVGEQEELEQE 212

Query: 238 QSFCALKEEYAKKLFD 253
               +  EE    LF 
Sbjct: 213 TDMLSHAEEIKAGLFR 228


>gi|254526106|ref|ZP_05138158.1| DNA repair protein RecN, ABC transporter [Prochlorococcus marinus
           str. MIT 9202]
 gi|221537530|gb|EEE39983.1| DNA repair protein RecN, ABC transporter [Prochlorococcus marinus
           str. MIT 9202]
          Length = 559

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 22/164 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++KI+ + +        + + F+    I  GD+G GK+ IL++++ L  G       
Sbjct: 1   MLIQLKIENIAL-----IEIIEINFEKGLNIITGDSGSGKSLILDSLNVLFGGT---NIP 52

Query: 61  YADVTRIGSPSF-----FSTFARV------EGMEGLADISIKLETRDDRSVRCL-QINDV 108
              + R G         FS+ +++       G EG +   I       ++ + L + N  
Sbjct: 53  LKHLIRPGKDHCMIEAIFSSSSQINNWLISNGFEGTSSELIIRRKSFRKNNKILSKYNVN 112

Query: 109 VIRVVDELNKHLR--ISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
            + +  +L + L   +       D        +RR  +D +   
Sbjct: 113 NLSINKQLLEKLGRFLIDFAGQSDTYIFDTLDKRRTIIDDLASQ 156


>gi|167623233|ref|YP_001673527.1| ATP-dependent OLD family endonuclease [Shewanella halifaxensis
          HAW-EB4]
 gi|167353255|gb|ABZ75868.1| ATP-dependent endonuclease of the OLD family-like protein
          [Shewanella halifaxensis HAW-EB4]
          Length = 415

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +  K L I+ ++ + ++ L    + TI  G NG GKT IL
Sbjct: 1  MHFKKLEINHWQQFETVDLAIHDRLTIITGSNGCGKTTIL 40


>gi|153008432|ref|YP_001369647.1| hypothetical protein Oant_1098 [Ochrobactrum anthropi ATCC 49188]
 gi|151560320|gb|ABS13818.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
          Length = 410

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +++   +   +R+  S+R     Q T+FVG+NG GK+N+  A+  
Sbjct: 47 MRLVSFSAKGYRSLRSVRFDLG-QVTVFVGENGAGKSNLYRALQL 90


>gi|150005408|ref|YP_001300152.1| DNA repair protein recN [Bacteroides vulgatus ATCC 8482]
 gi|254884287|ref|ZP_05256997.1| DNA repair protein recN [Bacteroides sp. 4_3_47FAA]
 gi|294777186|ref|ZP_06742643.1| DNA repair protein RecN [Bacteroides vulgatus PC510]
 gi|319640627|ref|ZP_07995344.1| DNA repair protein recN [Bacteroides sp. 3_1_40A]
 gi|149933832|gb|ABR40530.1| DNA repair protein recN [Bacteroides vulgatus ATCC 8482]
 gi|254837080|gb|EET17389.1| DNA repair protein recN [Bacteroides sp. 4_3_47FAA]
 gi|294449055|gb|EFG17598.1| DNA repair protein RecN [Bacteroides vulgatus PC510]
 gi|317387748|gb|EFV68610.1| DNA repair protein recN [Bacteroides sp. 3_1_40A]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 27/205 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ + I  +    +L + F    ++  G+ G GK+ IL AI  L   R     +     +
Sbjct: 2   LQSIYIQNYALIDTLDISFTPGFSVITGETGAGKSIILGAIGLLLGQR-----ADIKAIK 56

Query: 67  IGSPSFFST-------------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR-- 111
            G+                   F + +      +  I+ E       R   IND      
Sbjct: 57  KGANKCIVEARFNISAYQMEPFFTQRDLEYDPDECIIRRELYASGKSRAF-INDTPASLA 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID---PRHRRRMIDFERLMRG 168
            + EL + L           +       +   LD ++   D     ++    ++  + + 
Sbjct: 116 QMKELGEKLIDV--HSQHQNLLLNSEGFQLNVLD-ILAQDDNELSAYKDIYTEYRNVCKQ 172

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL 193
               +T+          I  Q+ +L
Sbjct: 173 LADFITQAEQSRKDEDYIRFQLEQL 197


>gi|89893821|ref|YP_517308.1| hypothetical protein DSY1075 [Desulfitobacterium hafniense Y51]
 gi|89333269|dbj|BAE82864.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 251

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 16 RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          RN     L    Q T  VG+NG GK+ ILEAI+ 
Sbjct: 35 RNLD--TLALHPQVTFLVGENGSGKSTILEAIAV 66


>gi|331083866|ref|ZP_08332975.1| hypothetical protein HMPREF0992_01899 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|330403291|gb|EGG82851.1| hypothetical protein HMPREF0992_01899 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 242

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++ +++   RN     L F++  T F G+NG GK+ +LEAI+ 
Sbjct: 23 LRNISVL--RNLKH--LEFNSNITFFAGENGSGKSTLLEAIAV 61


>gi|326781884|ref|YP_004322286.1| recombination endonuclease subunit [Synechococcus phage S-SM2]
 gi|310003074|gb|ADO97472.1| recombination endonuclease subunit [Synechococcus phage S-SM2]
          Length = 570

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFA 77
           Y  +    + +  + +G NG GK+ +L+A++F   G+ FR+ +   +      S      
Sbjct: 19  YTEVNFT-ENKTNLIIGTNGAGKSTVLDALTFSLFGKPFRKINKPQLIN----STNEKDC 73

Query: 78  RVEGMEGLADISIKLETRDDRSVRCLQINDV 108
           RVE    + +   K+      +V  +  ND 
Sbjct: 74  RVEVCFSVNNTEWKIVRGIKPNVFEIWRNDS 104


>gi|331684271|ref|ZP_08384863.1| DNA repair protein RecN [Escherichia coli H299]
 gi|331077886|gb|EGI49092.1| DNA repair protein RecN [Escherichia coli H299]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|301057164|ref|ZP_07198295.1| cobalt ABC transporter, ATP-binding protein [delta proteobacterium
           NaphS2]
 gi|300448722|gb|EFK12356.1| cobalt ABC transporter, ATP-binding protein [delta proteobacterium
           NaphS2]
          Length = 463

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 14/88 (15%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE---DKRNALFRIVTDIGSQ 344
           S G+   + +   L+ A           ILLLDE +A LD    D+  AL + +   G  
Sbjct: 135 SAGQTHRLAIASVLSTA---------PGILLLDEPAAQLDAPGKDRLRALLKEMKAAGHT 185

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQA 372
           + +   D   F++L +   FM     + 
Sbjct: 186 LIIADHDLDPFETLADRYVFM--EQGRI 211



 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 10/59 (16%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
           S GEQ  V +   +A             IL+LDE  A LD  +R  + +I++ +  Q F
Sbjct: 379 SFGEQHRVALASVIA---------PQPDILMLDEPFAGLDFGRRRNILKILSHL-CQTF 427


>gi|226322399|ref|ZP_03797917.1| hypothetical protein COPCOM_00167 [Coprococcus comes ATCC 27758]
 gi|225209199|gb|EEG91553.1| hypothetical protein COPCOM_00167 [Coprococcus comes ATCC 27758]
          Length = 517

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          +KI  L +  F  + + +++      I  G+N  GKT +
Sbjct: 1  MKITELILKNFGRFTNKQILLTDGINIIYGENESGKTTL 39



 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
            + +    K I++   S G  + +   I +A  +++         ++LD+   + D+ + 
Sbjct: 422 HVQLMSNGKKISMDQVSRGTLEQIYFAIRMAATKILHE---EECPVILDDAFGYYDDSRL 478

Query: 332 NALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
               R + D   Q+ +    K   + L +
Sbjct: 479 VQTLRWLKDSKRQVIIFSCQKREMEMLEK 507


>gi|146318589|ref|YP_001198301.1| hypothetical protein SSU05_0935 [Streptococcus suis 05ZYH33]
 gi|253751713|ref|YP_003024854.1| hypothetical protein SSUSC84_0840 [Streptococcus suis SC84]
 gi|253755573|ref|YP_003028713.1| hypothetical protein SSUBM407_0968 [Streptococcus suis BM407]
 gi|145689395|gb|ABP89901.1| hypothetical protein SSU05_0935 [Streptococcus suis 05ZYH33]
 gi|251816002|emb|CAZ51619.1| hypothetical protein SSUSC84_0840 [Streptococcus suis SC84]
 gi|251818037|emb|CAZ55826.1| hypothetical protein SSUBM407_0968 [Streptococcus suis BM407]
          Length = 695

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 29/46 (63%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  + I+ FR++   +++     T+ +G+N  GKT +L+A+S L
Sbjct: 1  MKLTKVIINNFRSFGDSQVIGFNDQTVLIGNNSSGKTTVLQALSKL 46


>gi|311746977|ref|ZP_07720762.1| putative SMC family protein [Algoriphagus sp. PR1]
 gi|126578674|gb|EAZ82838.1| putative SMC family protein [Algoriphagus sp. PR1]
          Length = 1179

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---GRGFRRAS 60
          + +  L I  F+++   + + FD   T  VG NG GK+N+++AI ++      R  R   
Sbjct: 1  MLLSKLEIKGFKSFGDKMVIHFDKGITGVVGPNGCGKSNVVDAIRWVLGEQKTRMLRSDK 60

Query: 61 YADVTRIGSP 70
            +V   G+ 
Sbjct: 61 MENVIFNGTK 70


>gi|91791612|ref|YP_561263.1| SMC protein-like protein [Shewanella denitrificans OS217]
 gi|91713614|gb|ABE53540.1| SMC protein-like protein [Shewanella denitrificans OS217]
          Length = 264

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 27/89 (30%)

Query: 22  RLVFDAQHTIFVGDNGVGKTNILEAI---------------------------SFLSPGR 54
            L FDA  T FVG+NG GK+ +LEAI                            +L   +
Sbjct: 55  SLDFDADVTFFVGENGSGKSTLLEAIAVAMGLNAEGGNKNTHFATKVSHSNLGYYLKTIK 114

Query: 55  GFRRASYADVTRIGSPSFFSTFARVEGME 83
            F++   +   R  S    +++   +G E
Sbjct: 115 SFKKPKDSYFLRAESFYNLASYMEEDGRE 143


>gi|147675720|ref|YP_001218254.1| hypothetical protein VC0395_A2354 [Vibrio cholerae O395]
 gi|262166993|ref|ZP_06034711.1| hypothetical protein VIJ_000155 [Vibrio cholerae RC27]
 gi|146317603|gb|ABQ22142.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|227011832|gb|ACP08042.1| hypothetical protein VC395_0013 [Vibrio cholerae O395]
 gi|262024577|gb|EEY43260.1| hypothetical protein VIJ_000155 [Vibrio cholerae RC27]
          Length = 565

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + IK + I  +R++         Q T+ +G+N  GKTN   A+S    G
Sbjct: 1  MYIKKVTIKNYRSFRFFEAQLQ-QLTVVIGENDTGKTNFFTALSLPLSG 48


>gi|307155365|ref|YP_003890749.1| hypothetical protein Cyan7822_5604 [Cyanothece sp. PCC 7822]
 gi|306985593|gb|ADN17474.1| conserved hypothetical protein [Cyanothece sp. PCC 7822]
          Length = 384

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 5  IKIKFLNISEFR----NYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI+ L    +R    N+    + F     + VG +G GKT IL +I
Sbjct: 1  MKIQKLT---YRDQEYNWKLDTVEFSPNLNLLVGISGAGKTQILRSI 44


>gi|307254299|ref|ZP_07536138.1| hypothetical protein appser9_5480 [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306862727|gb|EFM94682.1| hypothetical protein appser9_5480 [Actinobacillus
          pleuropneumoniae serovar 9 str. CVJ13261]
          Length = 462

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          I  L+I  +R   ++ L F     +  G NG  K++IL  IS
Sbjct: 2  ITNLDIDHYRKLRNITLSFTPGINLISGTNGTCKSSILHIIS 43


>gi|295396106|ref|ZP_06806289.1| ATP-dependent endonuclease [Brevibacterium mcbrellneri ATCC
          49030]
 gi|294971047|gb|EFG46939.1| ATP-dependent endonuclease [Brevibacterium mcbrellneri ATCC
          49030]
          Length = 83

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYAD 63
          +K++ L I  FR   + +++F    T+ VG+N VGK+ + EA+   L P R  RR    +
Sbjct: 1  MKVRQLEIENFRGVRAGKVIFVDN-TLLVGENNVGKSTVCEALDLVLGPERTSRRPVVDE 59


>gi|285019367|ref|YP_003377078.1| hypothetical protein XALc_2607 [Xanthomonas albilineans GPE PC73]
 gi|283474585|emb|CBA17085.1| hypothetical pseudogene protein [Xanthomonas albilineans]
          Length = 62

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT-IFVGDNGVGKTNILEAI 47
          +KI+ L I  FR    L      + T   +G     KT +LEAI
Sbjct: 1  MKIRQLKILNFRGICKLEWDLPNEKTFCLIGKGDSTKTTVLEAI 44


>gi|254506359|ref|ZP_05118502.1| conserved hypothetical protein [Vibrio parahaemolyticus 16]
 gi|219550839|gb|EED27821.1| conserved hypothetical protein [Vibrio parahaemolyticus 16]
          Length = 778

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 20/167 (11%)

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
             N   ++ S   FLD  FD+     +   ++     RK ++  R+ +      DL V +
Sbjct: 494 NNNKETLEASQEEFLDNYFDEINLLFQSLGSRNFNISRKQNNSGRKIVY-----DLEVSF 548

Query: 278 CDKAITIA----HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
               I         S  +++ + + I+LA    +SN      IL++D+     D ++ ++
Sbjct: 549 NGTTIPRNKMNCLFSESDRRALALCIYLAKINKLSNEDKAKAILVMDDPVTSFDNERISS 608

Query: 334 LFRIVTDIGS---QIFMTG-------TDKSVFDSLNETAKFMRISNH 370
           +   + +I     Q+F+T        T    F +     K ++++N 
Sbjct: 609 ILNKLYEISPTIKQLFITTHYRGMAATAIKKFAN-TSALKIVKVANG 654


>gi|170683348|ref|YP_001744799.1| recombination and repair protein [Escherichia coli SMS-3-5]
 gi|170521066|gb|ACB19244.1| DNA repair protein RecN [Escherichia coli SMS-3-5]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|188582301|ref|YP_001925746.1| ATP-dependent endonuclease [Methylobacterium populi BJ001]
 gi|179345799|gb|ACB81211.1| ATP-dependent endonuclease family protein [Methylobacterium
          populi BJ001]
          Length = 598

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +KI  + I  FR   S +LV    H + +GDN  GK+++ EAI  
Sbjct: 1  MKIFSVVIENFRGIQSAKLVL-PDHAVLIGDNNTGKSSVFEAIDL 44


>gi|82777974|ref|YP_404323.1| recombination and repair protein [Shigella dysenteriae Sd197]
 gi|309784640|ref|ZP_07679275.1| DNA repair protein RecN [Shigella dysenteriae 1617]
 gi|81242122|gb|ABB62832.1| protein used in recombination and DNA repair [Shigella dysenteriae
           Sd197]
 gi|308927537|gb|EFP73009.1| DNA repair protein RecN [Shigella dysenteriae 1617]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|145220206|ref|YP_001130915.1| DNA repair protein RecN [Prosthecochloris vibrioformis DSM 265]
 gi|145206370|gb|ABP37413.1| DNA replication and repair protein RecN [Chlorobium
          phaeovibrioides DSM 265]
          Length = 573

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L I  F     L + F    T+  G+ G GK+ I+ A+  +   R       +++ R
Sbjct: 2  LSSLYIRNFALIEELTIAFQPGLTVITGETGAGKSIIIGALGLVLGDRS-----SSEMVR 56

Query: 67 IGS 69
            +
Sbjct: 57 TDA 59


>gi|323703800|ref|ZP_08115437.1| SMC domain protein [Desulfotomaculum nigrificans DSM 574]
 gi|323531215|gb|EGB21117.1| SMC domain protein [Desulfotomaculum nigrificans DSM 574]
          Length = 982

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 17/122 (13%)

Query: 5   IKIKFLNISEFRNY------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-- 56
           + I  + +   ++Y        + +  +       G NGVGK+ ++EAI +         
Sbjct: 1   MWIAQIRLKNIKSYGAGPDGDGIYIQLEPGVNQIAGKNGVGKSTLIEAIGYALFDAEPVV 60

Query: 57  RRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
           R A    + R G  S       ++      D   ++E       R  ++    +R  D+ 
Sbjct: 61  RLAKNTYLLRNGCKS-----GEIDVWVWHQDCLYRVERDVGAGARRWKV----VRQDDDF 111

Query: 117 NK 118
            +
Sbjct: 112 IE 113



 Score = 37.2 bits (85), Expect = 3.9,   Method: Composition-based stats.
 Identities = 32/169 (18%), Positives = 57/169 (33%), Gaps = 19/169 (11%)

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
           S  E   A+  V     RV+ ++ LS    E +Q+     I+L     +  K  Q+    
Sbjct: 788 SKWEE--AKRAVVEQQRRVQTLDRLSKQRTEQMQEL----IRLQAQEKILEKARQTLKHA 841

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPH-------RSDLIVDYCDKAITIAHGST--GEQKV 294
           +E  A+ L       +      I           SD  +   + +      S   G+Q  
Sbjct: 842 QEAVARDLTARVAAQAQIIYNAISQEAAQFNWRSSDYTLTVANVSGEKRFASLSGGQQMK 901

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
             + + LA    +      A     DE +  LD D +  L  ++  + +
Sbjct: 902 AALAMQLA----LVKEFSAAGFCAFDEPTYGLDADSKTMLAEVIAKVQA 946


>gi|315656642|ref|ZP_07909529.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
 gi|315492597|gb|EFU82201.1| conserved hypothetical protein [Mobiluncus curtisii subsp.
          holmesii ATCC 35242]
          Length = 659

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTN 42
          ++++  + I  +R      L  DA+ T+ VG N   KT+
Sbjct: 3  KMRLSKIKIKNYRLLIDAELDVDAKTTLIVGRNNTAKTS 41


>gi|301064124|ref|ZP_07204571.1| RecF/RecN/SMC N-terminal domain protein [delta proteobacterium
          NaphS2]
 gi|300441744|gb|EFK06062.1| RecF/RecN/SMC N-terminal domain protein [delta proteobacterium
          NaphS2]
          Length = 370

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +IK + I  F++  +L  +      + +G NG GK+N++
Sbjct: 3  RIKHIRIEGFKSIKNLEPLMLGAINLLIGPNGSGKSNLI 41


>gi|228923834|ref|ZP_04087112.1| hypothetical protein bthur0011_48090 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
 gi|228835963|gb|EEM81326.1| hypothetical protein bthur0011_48090 [Bacillus thuringiensis
          serovar huazhongensis BGSC 4BD1]
          Length = 198

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++I  L IS FR++   S ++  +   +  +G N  GKT +++A+
Sbjct: 1  MQITKLTISNFRSFGPKSTKITLN-NLSAIIGSNSSGKTTLIQAL 44


>gi|209695895|ref|YP_002263825.1| recombination and repair protein [Aliivibrio salmonicida LFI1238]
 gi|208009848|emb|CAQ80159.1| DNA repair protein RecN [Aliivibrio salmonicida LFI1238]
          Length = 565

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 59/206 (28%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I+ F    SL L      T   G+ G GK+  ++A+      R     + A + R
Sbjct: 12  LAHIKITHFAIVKSLELDLTKGMTTITGETGAGKSIAIDALGLCLGDR-----AEASMVR 66

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVRCL-QINDVVI--RV 112
            G      T              +E  E        L     +  R    IN   +    
Sbjct: 67  QGEEKAEITVLFTLENNINAKRWLEDNELYDGNDCILRRVITKEGRSRGFINGSPVPATQ 126

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L   L       +   +       +   LD+    +          +     +  ++
Sbjct: 127 LKTLGHLLINIHGQHAHHELMK--PEYQLNMLDQYAGHLSLLNKTRSRYQAWRQCDNSLK 184

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
               L+     + +    IE Q+ EL
Sbjct: 185 Q---LIKNSLQNEAQKQLIEYQIKEL 207


>gi|268571445|ref|XP_002641048.1| C. briggsae CBR-DPY-27 protein [Caenorhabditis briggsae]
          Length = 1449

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 7   IKFLNISEFRNYA--SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           I+ + +  F++Y        F    T+ +G NG GK+NI++A+ F+   +  R
Sbjct: 73  IQDIIVHNFKSYKGSHQLGPFHKNLTMVMGPNGSGKSNIIDALLFVFGFKSKR 125


>gi|15803136|ref|NP_289168.1| recombination and repair protein [Escherichia coli O157:H7 EDL933]
 gi|15832732|ref|NP_311505.1| recombination and repair protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|168755358|ref|ZP_02780365.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4401]
 gi|168762408|ref|ZP_02787415.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4501]
 gi|168768703|ref|ZP_02793710.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4486]
 gi|168800495|ref|ZP_02825502.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC508]
 gi|195939667|ref|ZP_03085049.1| recombination and repair protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208809614|ref|ZP_03251951.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4206]
 gi|208812442|ref|ZP_03253771.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4045]
 gi|208819371|ref|ZP_03259691.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4042]
 gi|209397502|ref|YP_002272085.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4115]
 gi|254794561|ref|YP_003079398.1| recombination and repair protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|291283887|ref|YP_003500705.1| recombination and repair protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|12517040|gb|AAG57726.1|AE005491_6 protein used in recombination and DNA repair [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362949|dbj|BAB36901.1| DNA repair protein RecN [Escherichia coli O157:H7 str. Sakai]
 gi|189357331|gb|EDU75750.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4401]
 gi|189362141|gb|EDU80560.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4486]
 gi|189367302|gb|EDU85718.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4501]
 gi|189377148|gb|EDU95564.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC508]
 gi|208729415|gb|EDZ79016.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4206]
 gi|208733719|gb|EDZ82406.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4045]
 gi|208739494|gb|EDZ87176.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4042]
 gi|209158902|gb|ACI36335.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC4115]
 gi|209762488|gb|ACI79556.1| DNA repair protein RecN [Escherichia coli]
 gi|209762490|gb|ACI79557.1| DNA repair protein RecN [Escherichia coli]
 gi|209762492|gb|ACI79558.1| DNA repair protein RecN [Escherichia coli]
 gi|209762494|gb|ACI79559.1| DNA repair protein RecN [Escherichia coli]
 gi|209762496|gb|ACI79560.1| DNA repair protein RecN [Escherichia coli]
 gi|254593961|gb|ACT73322.1| recombination and repair protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|290763760|gb|ADD57721.1| recombination and repair protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|320188949|gb|EFW63608.1| DNA repair protein RecN [Escherichia coli O157:H7 str. EC1212]
 gi|320640798|gb|EFX10296.1| recombination and repair protein [Escherichia coli O157:H7 str.
           G5101]
 gi|320646143|gb|EFX15088.1| recombination and repair protein [Escherichia coli O157:H- str.
           493-89]
 gi|320651440|gb|EFX19841.1| recombination and repair protein [Escherichia coli O157:H- str. H
           2687]
 gi|320662708|gb|EFX30052.1| recombination and repair protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667525|gb|EFX34449.1| recombination and repair protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326344366|gb|EGD68124.1| DNA repair protein RecN [Escherichia coli O157:H7 str. 1125]
 gi|326347735|gb|EGD71452.1| DNA repair protein RecN [Escherichia coli O157:H7 str. 1044]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|116750517|ref|YP_847204.1| DNA repair protein RecN [Syntrophobacter fumaroxidans MPOB]
 gi|116699581|gb|ABK18769.1| DNA repair protein RecN [Syntrophobacter fumaroxidans MPOB]
          Length = 574

 Score = 44.9 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 64/206 (31%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +S F     L + F+    +  G+ G GK+ ++ A++ L   R     +  ++ R
Sbjct: 16  LRDLVVSNFAIIKDLEVSFEDGLNVLTGETGAGKSILIGAVNLLLGSR-----ASQEMIR 70

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
            G+                     R  G++   +I I+     +   R   +ND  + + 
Sbjct: 71  SGTGEALVEAVFSVSNRPRFIDRMRELGLDESGEILIRRSINRNGRNRIF-VNDCTVSLQ 129

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR------HRRRMIDFERLMR 167
                   +  +    +             LD    A+D R              +  ++
Sbjct: 130 QLQILAEGLISISGQHEHQLLLNPEIHLGLLD-SFGALDSRCREVACAYSEWSRTDEALK 188

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
               L       ++    +  Q  EL
Sbjct: 189 Q---LRRHKQDRAAQLDFMTFQFEEL 211


>gi|167522549|ref|XP_001745612.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775961|gb|EDQ89583.1| predicted protein [Monosiga brevicollis MX1]
          Length = 177

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 7  IKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
          I  + +  F++Y  ++    F    +  VG NG GK+N+++A+ F+   R    R+A   
Sbjct: 2  ITHMRMENFKSYLGVQEVGPFHQCFSSVVGPNGSGKSNVIDALLFVFGYRAKKIRQAKLK 61

Query: 63 DVTRIGSPSFFSTFARV 79
          D+             RV
Sbjct: 62 DLIHKSEGHTNLDSCRV 78


>gi|119510071|ref|ZP_01629211.1| hypothetical protein N9414_19652 [Nodularia spumigena CCY9414]
 gi|119465258|gb|EAW46155.1| hypothetical protein N9414_19652 [Nodularia spumigena CCY9414]
          Length = 689

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 5  IKIKFLNISEFRNY----ASLRLVFDAQHT--IFVGDNGVGKTNILEA 46
          +K+  + +  FR++      + L         I  G+NG GKT++L A
Sbjct: 1  MKLTSIKLCNFRSFYGTTPEIFLAVGDTLNTTIIHGNNGSGKTSLLNA 48


>gi|19552630|ref|NP_600632.1| DNA repair ATPase [Corynebacterium glutamicum ATCC 13032]
 gi|62390298|ref|YP_225700.1| DNA repair protein RECN [Corynebacterium glutamicum ATCC 13032]
 gi|21324182|dbj|BAB98807.1| ATPases involved in DNA repair [Corynebacterium glutamicum ATCC
           13032]
 gi|41325635|emb|CAF21424.1| DNA REPAIR PROTEIN RECN [Corynebacterium glutamicum ATCC 13032]
          Length = 593

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 90/292 (30%), Gaps = 62/292 (21%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I I+ L +       +    F +  T+  G+ G GKT ++  +  LS GR     +
Sbjct: 1   MLVDIAIENLGV-----IPAASAEFSSGLTVLTGETGAGKTMVVTGLRLLSGGR-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR----------------SVRCLQ 104
            A   R GSP      A VEG      +   +  R                   +VR + 
Sbjct: 51  DASRVRTGSPQ-----AVVEGRFVTQGVPCDIVERATGIVSNAGGAADENGEFLAVRSVG 105

Query: 105 IND----------VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR---MVFAI 151
            N           V    + E +  L          R+       +   LDR    +  +
Sbjct: 106 ANGRSKAHLGGRSVPAATLSEFSDELLTIHGQNDQLRLL--SPERQLEALDRFDPELAQL 163

Query: 152 DPRH---RRRMIDFERLMRGRNRLLTEGYFDSSWCS-SIEA---------QMAELGVKIN 198
              +          ++ ++ R     E   +      +I           + AEL  +I 
Sbjct: 164 RKNYNAKYLTWKSLDKDLQKRLSSRRELAQEVDRLQFAINEIEEVSPQPGEDAELVEQI- 222

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             R++ ++ L       +   +     LS      G FD+S  +  ++  + 
Sbjct: 223 -RRLQDVDTLREQAATALAAIDGAG-SLSDAMGGSGGFDESQESASDQLGQA 272


>gi|29789347|ref|NP_598547.1| structural maintenance of chromosomes protein 4 [Mus musculus]
 gi|30173242|sp|Q8CG47|SMC4_MOUSE RecName: Full=Structural maintenance of chromosomes protein 4;
           Short=SMC protein 4; Short=SMC-4; AltName:
           Full=Chromosome-associated polypeptide C; AltName:
           Full=XCAP-C homolog
 gi|26986200|emb|CAD59183.1| SMC4 protein [Mus musculus]
 gi|38566274|gb|AAH62939.1| Structural maintenance of chromosomes 4 [Mus musculus]
          Length = 1286

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 77  APRLMITHIVNQNFKSYAGEKVLGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 136

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 137 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 165


>gi|85107158|ref|XP_962321.1| hypothetical protein NCU07679 [Neurospora crassa OR74A]
 gi|28923924|gb|EAA33085.1| hypothetical protein NCU07679 [Neurospora crassa OR74A]
          Length = 1179

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           +++  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRVTEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKKKSPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|313884676|ref|ZP_07818432.1| DNA repair protein RecN [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620044|gb|EFR31477.1| DNA repair protein RecN [Eremococcus coleocola ACS-139-V-Col8]
          Length = 573

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 104/310 (33%), Gaps = 44/310 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI  F    +  + F    T+  G+ G GK+ I++A+  +  GRG       D  R
Sbjct: 2   LISLNIENFAIIQATSIDFSRGMTVLSGETGAGKSIIIDALGLVCGGRG-----SVDFIR 56

Query: 67  IGSP---------------SFFSTFARVEGMEGLADISIKLETRDD-RSVRCLQIND--V 108
            G+                +      +        D S+ L+ + + +    +++N    
Sbjct: 57  KGADKLSLEALFVFDHLPQAICQVLDKYGLSYSDEDASLLLQRQINLKGANLIRVNGHLA 116

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL--- 165
            + ++ EL   L           + +         +D+      P    ++  +++    
Sbjct: 117 NVSMLKELGAILVDIHGQNEHQVLLN--PNTHLDLVDQFAG---PSLLNQLQTYQKAYAN 171

Query: 166 MRG-RNRLLTEGYFDSSWCSSIE------AQMAELGVKINIARVEMINALSSLIMEYVQK 218
            R  R   ++    +S+    ++       ++ + G  ++ A  + +  +S  +   VQ 
Sbjct: 172 YRQLRKDWISGQETESNQLQRLDFIQFQAQELEKFG--LDAAEEDHLKEVSLKMRHQVQV 229

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                  +     +  + DQS     ++    L +  K+D   +  +     S   ++  
Sbjct: 230 ----QADIERLNQVLSESDQSVLNQLDQAMTFLEELVKIDDSYQVMIDQLKTSRFELEDI 285

Query: 279 DKAITIAHGS 288
            + +     S
Sbjct: 286 AQQLAFKDLS 295


>gi|302558752|ref|ZP_07311094.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
 gi|302476370|gb|EFL39463.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
          Length = 420

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 17/107 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG---------- 53
           + ++  ++  +R +     +    + T+ +G N  GK+ ++ A+  LS G          
Sbjct: 1   MSLERFSLENYRCFRERQEVELG-RITVVLGRNNSGKSAVVRALPLLSLGIRGDSQYPLD 59

Query: 54  ----RGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
               +GF   S+AD+    SP          G E    +S   E ++
Sbjct: 60  LDLIQGF-TPSFADLIHGSSPHGHIRLGASIGREDGETVSATAEVQN 105


>gi|225714870|gb|ACO13281.1| Structural maintenance of chromosomes protein 4 [Esox lucius]
          Length = 180

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 84  APRLMITHIVNQNFKSYAGEQILGPFHKRFSRIIGPNGSGKSNVIDSMLFVFGYRAQKIR 143

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 144 SKKLSVLIHSSDQHTGVQSCTVEVHFQKI 172


>gi|212543753|ref|XP_002152031.1| nuclear condensin complex subunit Smc2, putative [Penicillium
           marneffei ATCC 18224]
 gi|210066938|gb|EEA21031.1| nuclear condensin complex subunit Smc2, putative [Penicillium
           marneffei ATCC 18224]
          Length = 1179

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRIVEIIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E    IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKAKSPIGFEEYGSISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|163756179|ref|ZP_02163294.1| hypothetical protein KAOT1_06567 [Kordia algicida OT-1]
 gi|161323791|gb|EDP95125.1| hypothetical protein KAOT1_06567 [Kordia algicida OT-1]
          Length = 790

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 8/59 (13%)

Query: 4   RIKIKFLNISEFRNYASLRLVFD--------AQHTIFVGDNGVGKTNILEAISFLSPGR 54
            + +  + +  F+ ++ L L               +F+G+NGVGK+++L+AI+    G+
Sbjct: 363 NVYLDKIELKNFKCFSHLVLELPGYAEDTSAEPWLVFLGENGVGKSSVLKAIAIALMGK 421


>gi|308198054|ref|XP_001386802.2| DNA repair protein [Scheffersomyces stipitis CBS 6054]
 gi|149388833|gb|EAZ62779.2| DNA repair protein [Pichia stipitis CBS 6054]
          Length = 1306

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 104/328 (31%), Gaps = 69/328 (21%)

Query: 7   IKFLNISEFRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--------- 54
           +  L+I   R++       + F    T+  G NG GKT I+E + +++ G          
Sbjct: 4   LFKLSIKGIRSFEPENEETIQFGFPLTLICGQNGCGKTTIIECLKYVTTGDLPPNSKGGA 63

Query: 55  -------------------GFRRASYADVT---------RIGSPSFFSTFARVEGMEGLA 86
                               FR A+   +          +    +F +TF  +EG     
Sbjct: 64  FVNDPSISGRPVVTGQIKLAFRNANGKSMIATRTVQLTRKQTRGAFTNTFKTLEGQLATI 123

Query: 87  DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI--FSGLSMERRRFL 144
           D   K+      S +  +++      +      L         + +   S  S+ ++RF 
Sbjct: 124 DKGNKVSI----STKNSELDAQTPIFLGASPAILDYVLFCHQDESLWPLSEASVLKKRFD 179

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204
           D                F +++      L     D S    +  Q  +  + I+  R + 
Sbjct: 180 DIF----------EASKFTKVLDN----LKTIKKDMSTDIKLIEQSVKH-LNIDKTRAKK 224

Query: 205 IN----ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM 260
           I      +++ +  Y ++    ++K+        K  +   A  +E+ K L     +   
Sbjct: 225 IEDKVLQMNASVESYTEQIGDINLKIEAK----EKEAEDLFASNQEFQKTLSTYESLKIQ 280

Query: 261 SRRTLIGPHRSDLIVDYCDKAITIAHGS 288
            R       R    +DY D+A      S
Sbjct: 281 KRGVEEQIGRMKDNIDYIDEATDEELLS 308



 Score = 36.0 bits (82), Expect = 9.7,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 284  IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV----- 338
                S G++ +  + I LA A       G   I+ LDE + +LD +   AL   +     
Sbjct: 1194 RGRCSAGQKVLASILIRLALAECFGVNCG---IIALDEPTTNLDHENSEALAEALNNIIE 1250

Query: 339  ---TDIGSQIFMTGTDKSVFDSLNE---TAKFMRIS 368
                    Q+ +   D++    +N    T  F R+ 
Sbjct: 1251 YRKAQRNFQLIVITHDENFLTHINGGKFTDHFYRVQ 1286


>gi|148239727|ref|YP_001225114.1| ATPase [Synechococcus sp. WH 7803]
 gi|147848266|emb|CAK23817.1| Predicted ATPase [Synechococcus sp. WH 7803]
          Length = 370

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 10/46 (21%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ L +S +R+   + +    + T+  G NG GK+N+  ++  +
Sbjct: 1  MTLQHLAVSGYRSLRDVVIPLH-RLTLITGANGSGKSNLFRSLKLI 45


>gi|146320789|ref|YP_001200500.1| hypothetical protein SSU98_0942 [Streptococcus suis 98HAH33]
 gi|145691595|gb|ABP92100.1| hypothetical protein SSU98_0942 [Streptococcus suis 98HAH33]
          Length = 556

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 29/46 (63%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  + I+ FR++   +++     T+ +G+N  GKT +L+A+S L
Sbjct: 1  MKLTKVIINNFRSFGDSQVIGFNDQTVLIGNNSSGKTTVLQALSKL 46


>gi|119716708|ref|YP_923673.1| DNA repair protein RecN [Nocardioides sp. JS614]
 gi|119537369|gb|ABL81986.1| DNA replication and repair protein RecN [Nocardioides sp. JS614]
          Length = 584

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 15/88 (17%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   I+I  L + +     S  L      T+  G+ G GKT I+ A+  L  GR     +
Sbjct: 1  MLEEIRISSLGVID-----SSTLELGPGLTVITGETGAGKTMIVTALGLLLGGR-----A 50

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLADI 88
           +   R G+       ARVEG+  + D+
Sbjct: 51 DSGAVRTGA-----RTARVEGVVRVGDL 73


>gi|317485413|ref|ZP_07944292.1| DNA repair protein RecN [Bilophila wadsworthia 3_1_6]
 gi|316923372|gb|EFV44579.1| DNA repair protein RecN [Bilophila wadsworthia 3_1_6]
          Length = 519

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 76/227 (33%), Gaps = 31/227 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + I+ L +      + + L F +   +  G+ G GK+ IL+A++FL   R      
Sbjct: 1   MLEYLHIRDLAL-----ISDMELEFASGMNVLTGETGAGKSFILKALNFLMGER-----L 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            AD+ R G          +   E   ++ ++ E   +     L IND +           
Sbjct: 51  GADMVRPGKERAQVEALFMRSGE---ELIVRRELIAETGRSRLFINDTLASQETIKELRT 107

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
            +        +        + + +D  +   D            L+  RN LL E    +
Sbjct: 108 TLLVHTSQHGQQKLLQPNFQAKLIDDWMNQPD------------LLAARNTLLKELKEAA 155

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
               ++  +  EL       R E++    + I E V        +L 
Sbjct: 156 ERKEALRTRFRELAD-----RRELLEMHLTEI-EKVSPAEGEEEQLE 196


>gi|317499596|ref|ZP_07957859.1| ATP-dependent OLD family endonuclease [Lachnospiraceae bacterium
          5_1_63FAA]
 gi|316893145|gb|EFV15364.1| ATP-dependent OLD family endonuclease [Lachnospiraceae bacterium
          5_1_63FAA]
          Length = 625

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++IK+L+I  F++   + +       I VG N  GK++IL A+
Sbjct: 1  MEIKYLSIKNFKSIRHMEISDIQNALILVGKNNTGKSSILHAL 43


>gi|293415886|ref|ZP_06658526.1| DNA repair protein RecN [Escherichia coli B185]
 gi|291432075|gb|EFF05057.1| DNA repair protein RecN [Escherichia coli B185]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 69/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A++    GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALALCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|254994514|ref|ZP_05276704.1| hypothetical protein LmonocytoFSL_17167 [Listeria monocytogenes FSL
           J2-064]
          Length = 339

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 11  NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP--GRGFRRASYADVTRIG 68
           +I   + +  + + F+ +  I VG+N  GK+ ILEAI+ +     R   +    D+  I 
Sbjct: 1   HIKGLKKFKDIDIEFNEKINILVGENESGKSTILEAINIVLNQQYRSIDKYILKDLMNIN 60

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
           S      F +   +  L  I+I++E   D       I
Sbjct: 61  S---MKDFHKNPQVNNLPSITIEIELELDNQANVDTI 94


>gi|253578458|ref|ZP_04855730.1| AAA ATPase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850776|gb|EES78734.1| AAA ATPase [Ruminococcus sp. 5_1_39BFAA]
          Length = 341

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          + +  +    F  +  +++ F     + VG+NGVGKT+I++           
Sbjct: 4  MPLTKIAAENFTVFEDIKIPFCEGLNVLVGENGVGKTHIMKLAYAACQASKH 55


>gi|256823624|ref|YP_003147587.1| DNA repair protein RecN [Kangiella koreensis DSM 16069]
 gi|256797163|gb|ACV27819.1| DNA repair protein RecN [Kangiella koreensis DSM 16069]
          Length = 552

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 91/283 (32%), Gaps = 47/283 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I +F     L L   +  T+  G+ G GK+ +++A+S+    R     + ++V R
Sbjct: 2   LTSIHIKDFAIIDQLDLDLKSGMTVITGETGAGKSIMVDALSYALGER-----ADSNVVR 56

Query: 67  IGSPSF-FSTFARVEGMEGLADI----------SIKLETRDDRSVR-CLQINDVVIR--V 112
            G+     S +  ++ +  + D              L    +   R    +N   +    
Sbjct: 57  NGAKRAEISAYFDIKQLPHVKDWLDEQMLDDDDHCILRRVINHDGRSKAFVNGQPVNLAQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP------------RHRRRMI 160
           V EL   L           +F        + LDR     +                 ++ 
Sbjct: 117 VSELGDFLVDIHGQHEHQSLFK--PQVHLQLLDRYAGLTEQSAELSKVAAKIGSISSKLK 174

Query: 161 DFERLMRGRN----------RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
            F+  ++ +N          + L +   D +     E + A    ++     + + ALS 
Sbjct: 175 AFQSALKDKNDRKDLISFQLQELEQAPIDKANDIEQEHKRAANASRLLEKGQQSLAALSE 234

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
              E     N   I  +++  L    D+      +     L +
Sbjct: 235 D--EDTISSNLGRIVHTISDML--AVDEGLKNTHDLLQSALVE 273


>gi|218701127|ref|YP_002408756.1| recombination and repair protein [Escherichia coli IAI39]
 gi|218371113|emb|CAR18941.1| recombination and repair protein [Escherichia coli IAI39]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|120554381|ref|YP_958732.1| hypothetical protein Maqu_1460 [Marinobacter aquaeolei VT8]
 gi|120324230|gb|ABM18545.1| conserved hypothetical protein [Marinobacter aquaeolei VT8]
          Length = 391

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 12/97 (12%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR-----ASY 61
          I  +NI  F+ ++   +   A  T+  G N  GK+  L+A+  +S     R      A  
Sbjct: 2  ITQINIENFKCFSKKNMPVGA-LTMLTGFNAAGKSTALQALLLISQMVSGRHGDVSAALN 60

Query: 62 ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR 98
           ++ R+G+P        V   +G  +I I +ET + +
Sbjct: 61 GELVRMGTP------GDVLRSDGSKEIKIGIETVEQK 91


>gi|226946788|ref|YP_002801861.1| hypothetical protein Avin_47820 [Azotobacter vinelandii DJ]
 gi|226721715|gb|ACO80886.1| Conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 395

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L ++ +R+   L +    + T+  G NG GK+N+  A+  L+
Sbjct: 2  LTTLAVANYRSLRELIVPLG-RLTLITGANGSGKSNLYRALRLLA 45


>gi|320177033|gb|EFW52054.1| DNA repair protein RecN [Shigella dysenteriae CDC 74-1112]
 gi|320183097|gb|EFW57959.1| DNA repair protein RecN [Shigella flexneri CDC 796-83]
 gi|332091818|gb|EGI96896.1| DNA repair protein RecN [Shigella boydii 3594-74]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|312793323|ref|YP_004026246.1| SMC domain-containing protein [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180463|gb|ADQ40633.1| SMC domain protein [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 857

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 5   IKIKFLNISEFRNYASL--RLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFR--RA 59
           ++  FL I  F++Y      + F   +    +G NG GK++I EAI++   G   R    
Sbjct: 1   MRPLFLRIENFKSYKDTQNEIDFSNIKVACIIGKNGNGKSSIAEAIAWALFGEFERLQTG 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
               V      +    + +VE    L     K+  R DR  +      + +R  D L 
Sbjct: 61  KRGKVAETEYINSHRDYMQVEFEFELNKTIYKVVRRLDRKGKKYL--SLFVRKADSLI 116


>gi|281341326|gb|EFB16910.1| hypothetical protein PANDA_020979 [Ailuropoda melanoleuca]
          Length = 1267

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 139 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 167


>gi|82545159|ref|YP_409106.1| recombination and repair protein [Shigella boydii Sb227]
 gi|81246570|gb|ABB67278.1| protein used in recombination and DNA repair [Shigella boydii
           Sb227]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|332212801|ref|XP_003255507.1| PREDICTED: structural maintenance of chromosomes protein 3
           [Nomascus leucogenys]
          Length = 1250

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 84/271 (30%), Gaps = 43/271 (15%)

Query: 12  ISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADVTRIG 68
           I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R          
Sbjct: 41  IQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP--------- 91

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV-- 126
                   A +    G   IS  +E   D S   L I+   + +   +       +L   
Sbjct: 92  ----EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKK 147

Query: 127 ----PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNRLLTEGYF 178
                 +  +       R           +P +  +     ++       R +LL E   
Sbjct: 148 MVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLKLLREVAG 197

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
              +    + +   L  +    R + IN L   I E +        +L+     D     
Sbjct: 198 TRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQKWDKMRRA 255

Query: 239 SFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
               +   Y ++L + R    +  ++R   G
Sbjct: 256 LEYTI---YNQELNETRAKLDELSAKRETSG 283



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 941  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 998

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 999  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1058

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1059 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGESERGSGSQS 1118

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1119 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1168

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1169 PAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 1215


>gi|254385881|ref|ZP_05001200.1| DNA repair protein recN [Streptomyces sp. Mg1]
 gi|194344745|gb|EDX25711.1| DNA repair protein recN [Streptomyces sp. Mg1]
          Length = 575

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +   +
Sbjct: 1  MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADPAL 50

Query: 65 TRIGSPSFFS 74
           RIG+ +   
Sbjct: 51 VRIGAKAAVV 60


>gi|113953447|ref|YP_730384.1| RecF/RecN/SMC domain-containing protein [Synechococcus sp.
          CC9311]
 gi|113880798|gb|ABI45756.1| RecF/RecN/SMC N terminal domain protein [Synechococcus sp.
          CC9311]
          Length = 883

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +++     +  R +  L L F    T+  G N  GK++++EA+ 
Sbjct: 1  MRLIRSEFTSVRRHQDLALDFAPGLTVIGGANESGKSSLVEALH 44



 Score = 37.6 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 65/224 (29%), Gaps = 42/224 (18%)

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINA--------LSSLIMEYVQKENF------- 221
             D      +E Q+ E   ++ I R  +           L S + E   K +        
Sbjct: 666 KADLETLDRLEHQLTEQRHELGIQRGALFERCESLGKSDLHSAVAEASAKLDLATQAEQQ 725

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM-----------------DSMSRRT 264
             + +S   +L   F ++   L + Y+  L                       D      
Sbjct: 726 EALLISARSYLLQCFQKARSDLSQRYSNPLKSNINQVLQPLLANPNDSCSLSYDPKDGLQ 785

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
            +G  R   +  +          S G ++ +   + +A A  +    G    L+ D+   
Sbjct: 786 ELGLEREGTLFAFN-------QLSGGMKEQLNAALRIAIADTLKERHGGCLPLVFDDAFT 838

Query: 325 HLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSLNETAKFM 365
           + D  +   +  ++      G QI +   D   +  +      +
Sbjct: 839 NTDPQRIQGVLEMLQQAVSRGLQIIVLSCDPDPYKCIANQVVMI 882


>gi|58337852|ref|YP_194437.1| hypothetical protein LBA1590 [Lactobacillus acidophilus NCFM]
 gi|58255169|gb|AAV43406.1| hypothetical protein LBA1590 [Lactobacillus acidophilus NCFM]
          Length = 832

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 80/218 (36%), Gaps = 25/218 (11%)

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMINA---LSS 210
             L +    +  +    +   ++++ Q+AEL            +  A+ ++ NA    ++
Sbjct: 618 NELQKQLQIMTEKIAATTDEVNTLQQQVAELQVQLNNLSDSTAVFEAKQDLANAETNFTN 677

Query: 211 LIMEYVQKENFPH-IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
              EY+        I  SL    + +F +   A KE Y K L  GR +D    + L    
Sbjct: 678 SSKEYLANLLAAKWISRSLDIASNERFPKMLKAAKE-YLKLLTGGRYVDLELDKKLTVIR 736

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
                     K   + + S G  + +   + LA    I +       +L+D+   + D+ 
Sbjct: 737 ND-------GKKREVKYLSRGTAEQLYFALKLAFIEQIKDKINLP--ILIDDSFVNFDDR 787

Query: 330 KRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFM 365
           +   + +++  I   +Q+ +    +S+ + L       
Sbjct: 788 RIGYIDKLLKKISENNQVLIFTAQESLVNKLQIKPLTF 825



 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 86/257 (33%), Gaps = 32/257 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +++K + I  F  ++         +  +F G N  GK+  +  I  +  G   R  S   
Sbjct: 1   MRLKQIKIVNFGQFSDQTFDLPSDKIDVFFGANEAGKSTTVAFIKQILFGFHLRSNSSPF 60

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  + SP   S      G E   +       +  R +  ++ +  V+      +
Sbjct: 61  FEDYTPLAHV-SPMGGSLVFENNGSEYKLERLYAKGDKTKRGILTVKKDGEVVPESIFYD 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR-------- 169
           +   I     +   IF+   + +   L +    ++  +     D  +L+  R        
Sbjct: 120 QIQNIDGPFYADSFIFNQEMLGQVSSLSQEDL-LERIYYLGAADSGKLLELRDDFAKEAS 178

Query: 170 ------------NRLLTEGYFDSSWCSSIEAQMAEL---GVKINIARVEMINALSSLIME 214
                       NRLL +        +  +A+  +      K++  + E+I     L   
Sbjct: 179 KLFKKTGKKPEVNRLLKQVEIQRDNLAQTQAEFTDYETLAQKVSAKKSELIEKQKLLADL 238

Query: 215 YVQKENFPHIKLSLTGF 231
             + +N  H++  ++ +
Sbjct: 239 QKKADNLYHLEKEVSNY 255


>gi|24113953|ref|NP_708463.1| recombination and repair protein [Shigella flexneri 2a str. 301]
 gi|30064014|ref|NP_838185.1| recombination and repair protein [Shigella flexneri 2a str. 2457T]
 gi|110806717|ref|YP_690237.1| recombination and repair protein [Shigella flexneri 5 str. 8401]
 gi|24053062|gb|AAN44170.1| DNA repair protein RecN [Shigella flexneri 2a str. 301]
 gi|30042270|gb|AAP17995.1| DNA repair protein RecN [Shigella flexneri 2a str. 2457T]
 gi|110616265|gb|ABF04932.1| DNA repair protein recN [Shigella flexneri 5 str. 8401]
 gi|281602025|gb|ADA75009.1| DNA repair protein RecN [Shigella flexneri 2002017]
 gi|313648294|gb|EFS12738.1| DNA repair protein RecN [Shigella flexneri 2a str. 2457T]
 gi|332753362|gb|EGJ83742.1| DNA repair protein RecN [Shigella flexneri 4343-70]
 gi|332754041|gb|EGJ84413.1| DNA repair protein RecN [Shigella flexneri K-671]
 gi|332755600|gb|EGJ85963.1| DNA repair protein RecN [Shigella flexneri 2747-71]
 gi|332765594|gb|EGJ95807.1| DNA repair protein RecN [Shigella flexneri 2930-71]
 gi|332999391|gb|EGK18976.1| DNA repair protein RecN [Shigella flexneri VA-6]
 gi|333000789|gb|EGK20363.1| DNA repair protein RecN [Shigella flexneri K-218]
 gi|333000988|gb|EGK20558.1| DNA repair protein RecN [Shigella flexneri K-272]
 gi|333015508|gb|EGK34847.1| DNA repair protein RecN [Shigella flexneri K-227]
 gi|333015814|gb|EGK35150.1| DNA repair protein RecN [Shigella flexneri K-304]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|308273420|emb|CBX30022.1| hypothetical protein N47_D28310 [uncultured Desulfobacterium sp.]
          Length = 412

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 15/129 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--------PGRGFRR 58
           I  +    +R    ++    +   I VG N  GK+  L+ ISFL              R 
Sbjct: 2   ICSVEALNYRCLRYIKKDLGS-FHILVGPNASGKSTFLDVISFLGDVVREGPENAVRKRT 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            +Y D+  +    FF     +   +   +I               +I    I    E   
Sbjct: 61  PNYNDLIWLKKGRFFELAIEMNIPDKYQEI------IGRTGNCRYEIAVGDIPETGEFGI 114

Query: 119 HLRISWLVP 127
                W  P
Sbjct: 115 LSETMWFKP 123


>gi|299136217|ref|ZP_07029401.1| SMC domain protein [Acidobacterium sp. MP5ACTX8]
 gi|298602341|gb|EFI58495.1| SMC domain protein [Acidobacterium sp. MP5ACTX8]
          Length = 454

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 28/124 (22%)

Query: 2   TNRIKIKFLNISEFRNY-ASLRLVFDA------QHTIFVGDNGVGKTNILEAISFL---- 50
            + +  + L +   R +     L          +  + +G+NGVGKT +LEA+  +    
Sbjct: 8   PDAMHFRSLCLENVRAFGRPQSLDLFDNDGNISRWNLILGENGVGKTTLLEALMVMRPVP 67

Query: 51  -SPGRG---------------FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLET 94
            S  +                F         R G  +     A +E  +G A + +++E 
Sbjct: 68  ASIEKSGAAGTPTLSIARISEFENREIMRFIRRGESNSTVMTAVLETADG-ATLEVRVEI 126

Query: 95  RDDR 98
           +   
Sbjct: 127 KGST 130


>gi|291559718|emb|CBL38518.1| hypothetical protein CL2_15860 [butyrate-producing bacterium
          SSC/2]
          Length = 625

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++IK+L+I  F++   + +       I VG N  GK++IL A+
Sbjct: 1  MEIKYLSIKNFKSIRHMEISDIQNALILVGKNNTGKSSILHAL 43


>gi|169831193|ref|YP_001717175.1| DNA repair protein RecN [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169638037|gb|ACA59543.1| DNA repair protein RecN [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 572

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 22/130 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +  F     L + F     +  G+ G GK+ +++A+  +      RRAS  D  R
Sbjct: 2   IERLVVRNFVLIDHLEVEFGPGLNVLTGETGTGKSLLIDALEVVLG----RRASP-DYVR 56

Query: 67  IGSPSFFSTF----------------ARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            G+   +                   A +E  EGL  +S +L   + R+V  +    V +
Sbjct: 57  AGADRAYLEVVFGLQGGNPVLGELENAGMEAEEGLLILSRELF-GNGRNVYRIGGRTVPL 115

Query: 111 RVVDELNKHL 120
            +  E+ +HL
Sbjct: 116 SIFREIGRHL 125


>gi|157964247|ref|YP_001499071.1| DNA repair protein RecN [Rickettsia massiliae MTU5]
 gi|157844023|gb|ABV84524.1| DNA repair protein RecN [Rickettsia massiliae MTU5]
          Length = 549

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   +    L++  F     L + F+    +  G+ G GK+ +L+AI F    +     +
Sbjct: 1  MKQHM-FCSLSVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILFCLGYK-----T 54

Query: 61 YADVTRIGSPSFFS 74
            ++ + G      
Sbjct: 55 SNNIIKRGKDYAVV 68


>gi|94994731|ref|YP_602829.1| DNA repair protein recN [Streptococcus pyogenes MGAS10750]
 gi|94548239|gb|ABF38285.1| DNA repair protein recN [Streptococcus pyogenes MGAS10750]
          Length = 242

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 80/228 (35%), Gaps = 22/228 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + L F+   T+  G+ G GK+ I++A++ +   R     +  +V R
Sbjct: 16  LLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGAR-----ASTEVIR 70

Query: 67  IGS-----PSFFSTFARVEGMEGLADISIKLE----TRDD---RSVRCLQINDVVIRVVD 114
            G+       FFS  A  E +  L    I +E     R D         +IN  ++ +  
Sbjct: 71  RGANKAEIEGFFSVDATPELVACLESSGIAMEEELIIRRDIFANGRSVSRINGQMVNLAT 130

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRR----FLDRMVFAIDPRHRRRMIDFERLMRGRN 170
                  +  +    D+         ++    F D+    +   ++     ++ L R   
Sbjct: 131 LKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFGDKAFEQLKENYQLIFDRYKSLRRQVI 190

Query: 171 RLLTEGYFDSSWCSSIEAQMAEL-GVKINIARVEMINALSSLIMEYVQ 217
                          +  Q+AE+    ++    + +N     +M + Q
Sbjct: 191 DKQKNEKEHKDRIDMLAFQIAEIEAAALSRGEDDRLNQERDRLMNHKQ 238


>gi|155722985|ref|NP_055925.2| structural maintenance of chromosomes protein 5 [Homo sapiens]
 gi|122070387|sp|Q8IY18|SMC5_HUMAN RecName: Full=Structural maintenance of chromosomes protein 5;
           Short=SMC protein 5; Short=SMC-5; Short=hSMC5
 gi|55662386|emb|CAH73243.1| structural maintenance of chromosomes 5 [Homo sapiens]
          Length = 1101

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 7/130 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  +++  F  Y    +       + VG NG GK++I+ AI     G+         V  
Sbjct: 53  IVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 112

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN      ++V+E    L I  
Sbjct: 113 FVKRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQV 172

Query: 125 -----LVPSM 129
                 +P  
Sbjct: 173 GNLCQFLPQD 182


>gi|27545259|ref|NP_775360.1| structural maintenance of chromosomes protein 4 [Danio rerio]
 gi|20977563|gb|AAM28209.1| structural maintenance of chromosomes family member SMC4-like
           protein 1 [Danio rerio]
          Length = 1289

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 78  APRLMITHIVNRNFKSYAGEQILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 137

Query: 58  RASYADVTRI--GSPSFFSTFARVE 80
               + +     G P   S    V 
Sbjct: 138 SKKLSVLIHSSDGHPDIQSCTVEVH 162


>gi|218928273|ref|YP_002346148.1| recombination and repair protein [Yersinia pestis CO92]
 gi|115346884|emb|CAL19771.1| DNA repair protein RecN [Yersinia pestis CO92]
          Length = 559

 Score = 44.9 bits (105), Expect = 0.021,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 83/277 (29%), Gaps = 34/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 8   LVQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAVDALGLCLGNRS-----DGSMVR 62

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E      +    L        R    IN   V +  
Sbjct: 63  LGATRADICARFSLADTPSARQWLENNHLDDNNECLLRRAIGADGRSRGFINGTPVPVSQ 122

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMI 160
           + EL +HL       +   +       +++ LD            +  + I  +  R + 
Sbjct: 123 LRELGQHLIQIHGQHAHQLLLK--PDHQKQLLDAYANQSSLLAEMKAAYQIWHQSCRDLA 180

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKE 219
             ++    R        +     +S   Q  E   + I   R+     L SL  + +Q  
Sbjct: 181 LHQQQSLERTARQELLQYQLKELNSFSPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL 240

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +       L+     K   +  A  +E    L +  +
Sbjct: 241 SDDEQNNILSQLYAAKHQLTELASMDEQFNNLLNMLE 277


>gi|332673048|gb|AEE69865.1| conserved hypothetical protein [Helicobacter pylori 83]
          Length = 275

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 21/133 (15%)

Query: 5   IKI--KFLNISEFRNYA---------SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           +K+  + L + +FRN           +       +  I VG+N VGK+NILEA+      
Sbjct: 1   MKLYKRVLKLHQFRNLGKNLPTELLLNSSFEKHGELVILVGENNVGKSNILEAL------ 54

Query: 54  RGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV- 112
           + F   +  D+       +F +    + +  L + + +     D S   L+I    +   
Sbjct: 55  KAF---NDTDIKLCNEKDYFKSHEFEDAVLSLEEETSRNNETIDFSCVDLKIRYKEVSKG 111

Query: 113 VDELNKHLRISWL 125
           + EL+K L +   
Sbjct: 112 LKELSKTLIVYPF 124


>gi|326436734|gb|EGD82304.1| Smc4l1 protein [Salpingoeca sp. ATCC 50818]
          Length = 1294

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 2  TNRIKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
          T R+ I  + +  F++Y  ++    F    +  VG NG GK+N+++A+ F+   R    R
Sbjct: 15 TPRLMITKMRLENFKSYYGVQEVGPFHKCFSAVVGPNGSGKSNVIDAMLFVFGFRAKKIR 74

Query: 58 RASYADVTRIGS 69
          +A   D+     
Sbjct: 75 QAKLKDLIHNSE 86


>gi|320166531|gb|EFW43430.1| XCAP-C [Capsaspora owczarzaki ATCC 30864]
          Length = 1312

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 4   RIKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
           R+ I  + +  F++YA ++    F    +  VG NG GK+N+++A+ F+   R    R+ 
Sbjct: 22  RLMITKMVLENFKSYAGVQEIGPFHKSFSSVVGPNGSGKSNVIDAMLFVFAFRANRLRQK 81

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLA 86
           + +++    +      + RV       
Sbjct: 82  NVSELIHNSTNHKDLKYCRVSVHFHEI 108


>gi|228923825|ref|ZP_04087103.1| AAA ATPase [Bacillus thuringiensis serovar huazhongensis BGSC
          4BD1]
 gi|228835954|gb|EEM81317.1| AAA ATPase [Bacillus thuringiensis serovar huazhongensis BGSC
          4BD1]
          Length = 369

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYAD 63
           +  FR   +L++       I  G+N  GKT+ LEA+  LS         R A   +
Sbjct: 2  EVVSFRGIQNLKVENLGGINIVTGNNNSGKTSFLEAMMMLSVPESLLNIIRVARLRE 58


>gi|218706116|ref|YP_002413635.1| recombination and repair protein [Escherichia coli UMN026]
 gi|293406122|ref|ZP_06650048.1| recombination and repair protein [Escherichia coli FVEC1412]
 gi|298381856|ref|ZP_06991453.1| DNA repair protein RecN [Escherichia coli FVEC1302]
 gi|300900197|ref|ZP_07118386.1| DNA repair protein RecN [Escherichia coli MS 198-1]
 gi|218433213|emb|CAR14111.1| recombination and repair protein [Escherichia coli UMN026]
 gi|291426128|gb|EFE99160.1| recombination and repair protein [Escherichia coli FVEC1412]
 gi|298276996|gb|EFI18512.1| DNA repair protein RecN [Escherichia coli FVEC1302]
 gi|300356312|gb|EFJ72182.1| DNA repair protein RecN [Escherichia coli MS 198-1]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|42526809|ref|NP_971907.1| DNA repair protein RecN [Treponema denticola ATCC 35405]
 gi|41817124|gb|AAS11818.1| DNA repair protein RecN [Treponema denticola ATCC 35405]
          Length = 561

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 11/107 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ +++       SL + F+    +  G+ G GK+ ++ +++FL  G+     +  D+ R
Sbjct: 2   LENISVKNIALIDSLFVEFENGLNVLSGETGAGKSILIGSLTFLLGGK-----TSTDLIR 56

Query: 67  IGSPSFFSTFARVEGMEG------LADISIKLETRDDRSVRCLQIND 107
            G+     + +   G E       LAD  I+ E       R L+ N 
Sbjct: 57  SGTDEAAVSGSFFIGNEHSEALKWLADHGIEPENSRILIRRNLKQNG 103


>gi|119357962|ref|YP_912606.1| SMC domain-containing protein [Chlorobium phaeobacteroides DSM
          266]
 gi|119355311|gb|ABL66182.1| SMC domain protein [Chlorobium phaeobacteroides DSM 266]
          Length = 398

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 7  IKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
          I+ + +    ++AS     +     + +G NG GK+N++EA++ +      R +S  D  
Sbjct: 2  IQSIRLDNLLSFASGSPALELKNLNVLIGTNGSGKSNLIEALALVRTAP--RTSSNDDFQ 59

Query: 66 R 66
          R
Sbjct: 60 R 60


>gi|332655291|ref|ZP_08421031.1| SMC family, C- domain protein [Ruminococcaceae bacterium D16]
 gi|332515796|gb|EGJ45406.1| SMC family, C- domain protein [Ruminococcaceae bacterium D16]
          Length = 1193

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRAS 60
          + +K L I  F+++     L F +  T  VG NG GK+NI +AI ++   +     R   
Sbjct: 4  LYLKALEIQGFKSFPDKTVLTFGSDITAIVGPNGSGKSNISDAIRWVMGEQSTRVLRGGK 63

Query: 61 YADVT 65
            DV 
Sbjct: 64 MEDVI 68


>gi|301163798|emb|CBW23353.1| DNA repair protein [Bacteroides fragilis 638R]
          Length = 561

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 16/199 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  R+ +  
Sbjct: 2   LRSLYIQNYALIEKLDIRFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRQGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            V   R   S      F     +E   +  ++ E +     R   IND       + EL 
Sbjct: 62  CVIEARFDISAYHMEAFFEENELEYEPECILRREVQSSGKSRAF-INDTPASLTQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR---HRRRMIDFERLMRGRNRLLT 174
           + L           +       +   LD ++   +     +     D+++L +  + L+ 
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLD-ILSHNEEALDVYHHLYQDWKKLCKELDELIV 177

Query: 175 EGYFDSSWCSSIEAQMAEL 193
                 +    I  Q+ +L
Sbjct: 178 LAEQSKTDEDYIRFQLEQL 196


>gi|300940954|ref|ZP_07155478.1| DNA repair protein RecN [Escherichia coli MS 21-1]
 gi|300454278|gb|EFK17771.1| DNA repair protein RecN [Escherichia coli MS 21-1]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|288928334|ref|ZP_06422181.1| DNA repair protein RecN [Prevotella sp. oral taxon 317 str. F0108]
 gi|288331168|gb|EFC69752.1| DNA repair protein RecN [Prevotella sp. oral taxon 317 str. F0108]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 67/204 (32%), Gaps = 22/204 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +  L I  F     L + F +  ++  G+ G GK+ IL A+  +    +  +  +  +  
Sbjct: 2   LTQLYIKNFALIDELDMDFRSGFSVITGETGAGKSIILGALGLVMGQRADVKSIKHGAEK 61

Query: 63  -------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVD 114
                  ++   G  SFF    + +      D  I+ E       R    +    + +V 
Sbjct: 62  CTVEAHFNIAHYGLESFFE---QNDLDYDANDCIIRREINVSGKSRAFINDAPAPLALVK 118

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDFERL---MRGR 169
           EL +  R+  +      +       +   +D +    A    +      ++     +R  
Sbjct: 119 ELGE--RLIDIHSQHQNLLLNKEDFQLNVIDLIAQNSAQLAEYAEAYDKYKAAEKELRQL 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL 193
             L++       +     A++ E 
Sbjct: 177 EELISGNKEREDYLRFQHAELEEA 200


>gi|238027007|ref|YP_002911238.1| hypothetical protein bglu_1g13850 [Burkholderia glumae BGR1]
 gi|237876201|gb|ACR28534.1| Hypothetical protein bglu_1g13850 [Burkholderia glumae BGR1]
          Length = 391

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+     +   A   +  G NG GK+++  A+  L+
Sbjct: 4  LSALAIANYRSLREFIVPL-AGLNVVTGPNGSGKSSVYRALRLLA 47


>gi|126640403|ref|YP_001083387.1| recombination and DNA repair protein [Acinetobacter baumannii ATCC
           17978]
          Length = 559

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 91/281 (32%), Gaps = 36/281 (12%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R   
Sbjct: 1   MDAFM-LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT-- 54

Query: 61  YADVTRIGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVR-CLQIND 107
             +  R GS     T                E         I L      + R    +N 
Sbjct: 55  DTNYVRYGSDKADVTAVFTYQDNSPEAKWLKEHELDDDSGEIHLRRVIFATGRSKAWVNG 114

Query: 108 VV--IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL 165
               +  + EL + L   +   S  ++        + +LDR              D    
Sbjct: 115 RPSSLSELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDR-----YSNFYAEANDVREA 167

Query: 166 MR--GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
                RN    +   D+        ++A L ++I      +      +  E+ +  +  H
Sbjct: 168 YSTWQRNIRQHQAALDAQATRL--QRIATLELQIEELEEIIQTDYKEIEQEFDRLSHHEH 225

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
           I    +  L+   D++   + +E +  +   R+++S + R+
Sbjct: 226 IMQDCSYSLNA-LDEAEQNITQEMSSII---RRLESHAGRS 262


>gi|220927491|ref|YP_002504400.1| hypothetical protein Ccel_0032 [Clostridium cellulolyticum H10]
 gi|219997819|gb|ACL74420.1| conserved hypothetical protein [Clostridium cellulolyticum H10]
          Length = 664

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +KIK L++  F         F     +  G N  GK+ ++
Sbjct: 1  MKIKRLHVRGFGKLQDFNCDFSDGLNVIYGHNESGKSTLM 40


>gi|23398518|gb|AAH38225.1| Structural maintenance of chromosomes 5 [Homo sapiens]
 gi|119582906|gb|EAW62502.1| SMC5 structural maintenance of chromosomes 5-like 1 (yeast),
           isoform CRA_b [Homo sapiens]
 gi|123993377|gb|ABM84290.1| structural maintenance of chromosomes 5 [synthetic construct]
 gi|124000517|gb|ABM87767.1| structural maintenance of chromosomes 5 [synthetic construct]
 gi|168278663|dbj|BAG11211.1| structural maintenance of chromosomes protein 5 [synthetic
           construct]
          Length = 1101

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 7/130 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  +++  F  Y    +       + VG NG GK++I+ AI     G+         V  
Sbjct: 53  IVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 112

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN      ++V+E    L I  
Sbjct: 113 FVKRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQV 172

Query: 125 -----LVPSM 129
                 +P  
Sbjct: 173 GNLCQFLPQD 182


>gi|332977514|gb|EGK14286.1| DNA repair protein RecN [Desmospora sp. 8437]
          Length = 564

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 38/301 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA- 62
           ++ ++I +F     + + FD    +  G+ G GK+ + +A+S ++ GRG   F       
Sbjct: 2   LREISIRDFAIIEQVHVTFDNGFHVLTGETGAGKSILFDALSLVTGGRGSTDFIGHHAKK 61

Query: 63  ----DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV--VDEL 116
                +  +G            G+E      +             +IN  ++ +  + ++
Sbjct: 62  AMVEALFELGESHPVRPVLSELGLEPEDPHLLIRREISSSGKSTCRINGQMVTLAMLKQV 121

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA----IDPRHRRRMIDFERLMRGRNRL 172
             HL          ++      E  R+LD    A        ++    ++  ++    R+
Sbjct: 122 GTHLVEIHGQHEHQKLLQV--EEHLRWLDAFGGAPLKKRLQAYQEIYREYRDVVNQLERI 179

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIA-----------RVEMINALSSLIMEYVQKENF 221
             +    S     +  Q  E+      A           R+     L     +  +    
Sbjct: 180 DADEKEVSRRIDMLTFQRDEIAAARLEAGEDEVLEQEHNRLAHAERLMQNAADSYEALYG 239

Query: 222 PHIKLSLTG------FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
            +                  +D+S   + E      +   +      R     +R +L  
Sbjct: 240 ENRGAESINRAVRDLEEIVPYDESLSGVLELIQSAYYQVEEAARQLGR-----YRDELEF 294

Query: 276 D 276
           D
Sbjct: 295 D 295


>gi|325473867|gb|EGC77055.1| DNA repair protein RecN [Treponema denticola F0402]
          Length = 561

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 11/107 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ +++       SL + F+    +  G+ G GK+ ++ +++FL  G+     +  D+ R
Sbjct: 2   LENISVKNIALIDSLFVEFENGLNVLSGETGAGKSILIGSLTFLLGGK-----TSTDLIR 56

Query: 67  IGSPSFFSTFARVEGMEG------LADISIKLETRDDRSVRCLQIND 107
            G+     + +   G E       LAD  I+ E       R L+ N 
Sbjct: 57  SGTDEAAVSGSFFIGNEHSEALKWLADHGIEPENSRILIRRNLKQNG 103


>gi|288556910|ref|YP_003428845.1| putative DNA repair protein [Bacillus pseudofirmus OF4]
 gi|288548070|gb|ADC51953.1| putative protein involved in DNA repair [Bacillus pseudofirmus OF4]
          Length = 475

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +  F+++    + F A   + VG +  GKT I+  + ++     F +    D  R
Sbjct: 4   IASLRLENFQSHLDTTIEFSAGLNVLVGQSDSGKTAIIRGVRWVL----FNQPRGTDFMR 59

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
           +G+      FARV  +     ++I  E    ++   ++
Sbjct: 60  VGAD-----FARV-TLTFTHGVTIVRERTSSKNRYIIK 91


>gi|255524481|ref|ZP_05391436.1| SMC domain protein [Clostridium carboxidivorans P7]
 gi|296185983|ref|ZP_06854388.1| RecF/RecN/SMC [Clostridium carboxidivorans P7]
 gi|255511777|gb|EET88062.1| SMC domain protein [Clostridium carboxidivorans P7]
 gi|296049251|gb|EFG88680.1| RecF/RecN/SMC [Clostridium carboxidivorans P7]
          Length = 250

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++   +N     L F  + T  VG+NG GK+ ILEAI
Sbjct: 29 SLEAVKNLN--TLDFHPKVTFIVGENGTGKSTILEAI 63


>gi|241764428|ref|ZP_04762452.1| chromosome segregation protein SMC [Acidovorax delafieldii 2AN]
 gi|241366170|gb|EER60747.1| chromosome segregation protein SMC [Acidovorax delafieldii 2AN]
          Length = 1174

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 67/378 (17%), Positives = 122/378 (32%), Gaps = 45/378 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + +S F+++A     +   Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1   MRLTSIKLSGFKSFAEPTNFMLPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLAD------ISIKLETRDDR-SVRCLQINDV 108
             DV   G       S  S     +  +  A         + +     R       +N+ 
Sbjct: 61  MQDVIFSGTTTRKQASRASVELVFDNSDHRAGGQWSQYGEVAVRRVLTRDGTSSYYLNNQ 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D         L           ++ RI      E R FL+        +++ R  
Sbjct: 121 PVRRRDVQDVFLGTGLGPRAYAIIGQGTISRIIESRPEELRLFLEEAAG--VSKYKERRR 178

Query: 161 DF-ERLMRGRNRLLTEGYFDSSW---CSSIEAQMAELGVKI-NIARVEMINALSSLIMEY 215
           +   RL   R  L                +E Q AE+  K   +     +       ++ 
Sbjct: 179 ETENRLSDTRENLTRVEDILRELNANLEKLEKQ-AEVAAKYNTLQADATLKQHQLWFLKR 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI- 274
            + E     K+ L G       +S  A        L   R+    +    +   +  L  
Sbjct: 238 AEAEEQ-QAKVRLDGLQAVNDLESRMADLRAVESDLETIRQAHYAAG-DQVNQAQGKLYE 295

Query: 275 --VDYCDKAITIAHGSTG----EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD- 327
              +       I +   G    EQ++V +   +A  +        A I L +   A +D 
Sbjct: 296 ATAEVGKLEAEIRYVVEGRQRVEQRLVQLAEQIAQWQARKE---EADIELENLAGAGVDA 352

Query: 328 EDKRNALFRIVTDIGSQI 345
           E++   L   V +   Q+
Sbjct: 353 EERAELLAAQVEEQAMQL 370


>gi|108806580|ref|YP_650496.1| recombination and repair protein [Yersinia pestis Antiqua]
 gi|108813053|ref|YP_648820.1| recombination and repair protein [Yersinia pestis Nepal516]
 gi|145599857|ref|YP_001163933.1| recombination and repair protein [Yersinia pestis Pestoides F]
 gi|149366895|ref|ZP_01888929.1| DNA repair protein [Yersinia pestis CA88-4125]
 gi|162421663|ref|YP_001605902.1| recombination and repair protein [Yersinia pestis Angola]
 gi|165924417|ref|ZP_02220249.1| DNA repair protein RecN [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165938354|ref|ZP_02226912.1| DNA repair protein RecN [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011545|ref|ZP_02232443.1| DNA repair protein RecN [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211364|ref|ZP_02237399.1| DNA repair protein RecN [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399718|ref|ZP_02305236.1| DNA repair protein RecN [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419655|ref|ZP_02311408.1| DNA repair protein RecN [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424294|ref|ZP_02316047.1| DNA repair protein RecN [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170025198|ref|YP_001721703.1| recombination and repair protein [Yersinia pseudotuberculosis
           YPIII]
 gi|229841040|ref|ZP_04461199.1| recombination and repair protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229843144|ref|ZP_04463290.1| recombination and repair protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229893982|ref|ZP_04509168.1| recombination and repair protein [Yersinia pestis Pestoides A]
 gi|229903494|ref|ZP_04518607.1| recombination and repair protein [Yersinia pestis Nepal516]
 gi|270487276|ref|ZP_06204350.1| DNA repair protein RecN [Yersinia pestis KIM D27]
 gi|294503113|ref|YP_003567175.1| DNA repair protein RecN [Yersinia pestis Z176003]
 gi|108776701|gb|ABG19220.1| DNA repair protein RecN [Yersinia pestis Nepal516]
 gi|108778493|gb|ABG12551.1| DNA repair protein RecN [Yersinia pestis Antiqua]
 gi|145211553|gb|ABP40960.1| DNA repair protein RecN [Yersinia pestis Pestoides F]
 gi|149291269|gb|EDM41344.1| DNA repair protein [Yersinia pestis CA88-4125]
 gi|162354478|gb|ABX88426.1| DNA repair protein RecN [Yersinia pestis Angola]
 gi|165913732|gb|EDR32351.1| DNA repair protein RecN [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165923477|gb|EDR40609.1| DNA repair protein RecN [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989493|gb|EDR41794.1| DNA repair protein RecN [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207135|gb|EDR51615.1| DNA repair protein RecN [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962396|gb|EDR58417.1| DNA repair protein RecN [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050426|gb|EDR61834.1| DNA repair protein RecN [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167057143|gb|EDR66906.1| DNA repair protein RecN [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169751732|gb|ACA69250.1| DNA repair protein RecN [Yersinia pseudotuberculosis YPIII]
 gi|229679264|gb|EEO75367.1| recombination and repair protein [Yersinia pestis Nepal516]
 gi|229689491|gb|EEO81552.1| recombination and repair protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229697406|gb|EEO87453.1| recombination and repair protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229703867|gb|EEO90880.1| recombination and repair protein [Yersinia pestis Pestoides A]
 gi|262361149|gb|ACY57870.1| DNA repair protein RecN [Yersinia pestis D106004]
 gi|262365297|gb|ACY61854.1| DNA repair protein RecN [Yersinia pestis D182038]
 gi|270335780|gb|EFA46557.1| DNA repair protein RecN [Yersinia pestis KIM D27]
 gi|294353572|gb|ADE63913.1| DNA repair protein RecN [Yersinia pestis Z176003]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 83/277 (29%), Gaps = 34/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 2   LVQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAVDALGLCLGNRS-----DGSMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E      +    L        R    IN   V +  
Sbjct: 57  LGATRADICARFSLADTPSARQWLENNHLDDNNECLLRRAIGADGRSRGFINGTPVPVSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMI 160
           + EL +HL       +   +       +++ LD            +  + I  +  R + 
Sbjct: 117 LRELGQHLIQIHGQHAHQLLLK--PDHQKQLLDAYANQSSLLAEMKAAYQIWHQSCRDLA 174

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKE 219
             ++    R        +     +S   Q  E   + I   R+     L SL  + +Q  
Sbjct: 175 LHQQQSLERTARQELLQYQLKELNSFSPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL 234

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +       L+     K   +  A  +E    L +  +
Sbjct: 235 SDDEQNNILSQLYAAKHQLTELASMDEQFNNLLNMLE 271


>gi|307719853|ref|YP_003875385.1| hypothetical protein STHERM_c21830 [Spirochaeta thermophila DSM
           6192]
 gi|306533578|gb|ADN03112.1| hypothetical protein STHERM_c21830 [Spirochaeta thermophila DSM
           6192]
          Length = 716

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63
           ++++ + +  F  ++ +R       T+F G N  GK+ + +A+   ++ GR        D
Sbjct: 1   MRLRGIRLIGFGKFSEVRFELGP-VTVFHGPNEAGKSTVCDALYDLIASGR-------KD 52

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           + R G            G E     S+  E    RS R 
Sbjct: 53  LDRYGRAGERRVEGEWVGEEWHVPASLFSEVYAIRSGRV 91


>gi|295105578|emb|CBL03122.1| DNA replication and repair protein RecN [Faecalibacterium
           prausnitzii SL3/3]
          Length = 556

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 66/211 (31%), Gaps = 40/211 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADVT 65
           +  L I          + F+    +  G+ G GK+ ++++I + L      R +    + 
Sbjct: 2   LSSLQIENVAVIQKAEVHFEPGLNVLTGETGAGKSILIDSINAILGN----RTSKD--LV 55

Query: 66  RIGSPSFFSTFA------------RVEGMEGLADISIKLETRDDRSVRCLQINDVV--IR 111
           R G+       A               G E    + +  E   +      +IN +     
Sbjct: 56  RTGAAKAVIRAAFEQVPPAVLDKLEQSGYERSEALLLSREITAEGKS-SCRINGMPATAA 114

Query: 112 VVDELNK--------HLRISWLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           V+ EL          H  +  L P+    I    +  R  F           +     + 
Sbjct: 115 VLRELCGGLININGQHDSVGLLNPAHHLGILDDYAQNRTVF---------QEYYALYREL 165

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
            R+ R  + L+T+          ++ Q+ E+
Sbjct: 166 VRVKRELDALITDEAEKQRKIDLLQYQVQEI 196


>gi|291520802|emb|CBK79095.1| DNA replication and repair protein RecN [Coprococcus catus GD/7]
          Length = 558

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 21/122 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I +K + + +        + F     I  G+ G GK+ I+ +IS    G+      
Sbjct: 1   MLQNIHVKNMALID-----EADVDFGGHLNILTGETGAGKSIIIGSISTALGGK-----V 50

Query: 61  YADVTRIGSPSFFS----------TFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVV 109
             DV R  +                 A +E ME   D   + +  R   S    +IN  +
Sbjct: 51  SRDVIRKDAEYALVELNFKVNSPQILAELEKMEIPVDGDEVVISRRITGSRSVARINGEL 110

Query: 110 IR 111
           + 
Sbjct: 111 VS 112


>gi|221484425|gb|EEE22721.1| structural maintenance of chromosomes smc1, putative [Toxoplasma
           gondii GT1]
          Length = 510

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRR 58
             R+ ++++ +  F++Y    +V         +G NG GK+N+ +AI F      +  R 
Sbjct: 227 AGRLCLRWVVLENFKSYKGTHVVGPLYGSVAVIGPNGAGKSNLTDAICFALGVNAKQLRC 286

Query: 59  ASYADVTRIGSP 70
               ++      
Sbjct: 287 TRLVELIHASEA 298


>gi|153872184|ref|ZP_02001150.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152071349|gb|EDN68849.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 272

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 5  IKIKFLNISEFRNYASLRL----VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          + +  + I EFR   ++ +     F  +      +NG GK+ +L+ I  L      
Sbjct: 1  MHLTRIQIPEFRVLKNVDITFEKDFTPKVFPLGSENGGGKSTLLQLIFVLLHCASH 56


>gi|83592276|ref|YP_426028.1| DNA repair protein RecN [Rhodospirillum rubrum ATCC 11170]
 gi|83575190|gb|ABC21741.1| DNA repair protein RecN [Rhodospirillum rubrum ATCC 11170]
          Length = 577

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L L F     +F G+ G GK+ +L+++S     R     + + + R
Sbjct: 2  LSALSIRDVVLIERLDLAFGPGLGVFTGETGAGKSILLDSLSLALGAR-----ADSALVR 56

Query: 67 IGSPSF 72
           G+P  
Sbjct: 57 KGAPQL 62


>gi|85059778|ref|YP_455480.1| recombination and repair protein [Sodalis glossinidius str.
           'morsitans']
 gi|84780298|dbj|BAE75075.1| DNA repair protein RecN [Sodalis glossinidius str. 'morsitans']
          Length = 553

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 102/302 (33%), Gaps = 42/302 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F    +L + F +  ++  G+ G GK+  ++A+     GR       A + R
Sbjct: 2   LAQLTIANFAIVRALTIDFQSGMSVITGETGAGKSIAIDALGLCLGGRS-----EASMVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
             +                 + +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  PDAARADICARFLLNDTPLAARWLVDNALDNGNECLMRRVVNQDGRSRGF-INGMPVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +       E+ ++    
Sbjct: 116 QLRELGQFLIQIHGQHAHQLMLR--PDHQKRLLD--------AYA-----CEKDLQQAMA 160

Query: 172 LLTEGYFDSSW-CSSIEAQMAELGV--KINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
                +  S    +S   Q AE     ++   +++ +N  + +  EY ++ +  + +L+ 
Sbjct: 161 AAYRQWHQSCLDLASARQQAAERDARRELLQYQLKELNEFAPVADEY-EQIDQEYKRLAN 219

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP--HRSDLIVDYCDKAITIAH 286
           +G L     Q+   L E     L             L+      SD++    D AI +  
Sbjct: 220 SGQLITTTQQTLELLSESDEANLLSQLHAARQVMSELVTLDASLSDVMTLLEDAAIQLTE 279

Query: 287 GS 288
            S
Sbjct: 280 AS 281


>gi|60682324|ref|YP_212468.1| DNA repair protein [Bacteroides fragilis NCTC 9343]
 gi|60493758|emb|CAH08548.1| DNA repair protein [Bacteroides fragilis NCTC 9343]
          Length = 561

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 16/199 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  R+ +  
Sbjct: 2   LRSLYIQNYALIEKLDIRFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRQGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            V   R   S      F     +E   +  ++ E +     R   IND       + EL 
Sbjct: 62  CVIEARFDISAYHMEAFFEENELEYEPECILRREVQSSGKSRAF-INDTPASLTQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR---HRRRMIDFERLMRGRNRLLT 174
           + L           +       +   LD ++   +     +     D+++L +  + L+ 
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLD-ILSHNEEALDVYHHLYQDWKKLCKELDELIV 177

Query: 175 EGYFDSSWCSSIEAQMAEL 193
                 +    I  Q+ +L
Sbjct: 178 LAEQSKTDEDYIRFQLEQL 196


>gi|20521095|dbj|BAA25520.2| KIAA0594 protein [Homo sapiens]
          Length = 1120

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 7/130 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  +++  F  Y    +       + VG NG GK++I+ AI     G+         V  
Sbjct: 72  IVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 131

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN      ++V+E    L I  
Sbjct: 132 FVKRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQV 191

Query: 125 -----LVPSM 129
                 +P  
Sbjct: 192 GNLCQFLPQD 201


>gi|320334215|ref|YP_004170926.1| SMC domain-containing protein [Deinococcus maricopensis DSM 21211]
 gi|319755504|gb|ADV67261.1| SMC domain protein [Deinococcus maricopensis DSM 21211]
          Length = 910

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 49/243 (20%), Positives = 86/243 (35%), Gaps = 44/243 (18%)

Query: 5   IKIKFLNISEF---RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--RA 59
           ++   L +  F   R +A +    D +     G  G GK+ +L+A++F   G   R    
Sbjct: 1   MRPLRLTVQGFMPFRQHADVDFS-DMELYAIQGQTGSGKSALLDAMTFALYGSTPRLGAR 59

Query: 60  SYADVTRIGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRS------VRC 102
               +   G      +F           AR  G    A+  ++ E   D         + 
Sbjct: 60  GLDALISQGERGLAVSFEFESGGETYRVARTHGR-KQAEREVRFERLVDGRFVSLAENKK 118

Query: 103 LQINDVVIRVVDELNKHLRISWLVP--SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            QI + + R V         + L+P    DR   G   ER+  L  ++      H RRM 
Sbjct: 119 AQIQEHITRAVGLDYDAFTRAILLPQGQFDRFLRGSGRERQELLGALMNM---EHVRRMA 175

Query: 161 DFERL--------MRGRNRLLTEGYFD------SSWCSSIEAQMAELGVKINIARVEMIN 206
           ++           +  RN LL   Y D      ++W +  +A +A+   ++   R  +  
Sbjct: 176 EYAGAKRSGLAHELAARNALLDGEYRDLSDDVIAAWDAERDAALAD-AERLGQDRERLNA 234

Query: 207 ALS 209
            L+
Sbjct: 235 TLA 237


>gi|300949011|ref|ZP_07163064.1| DNA repair protein RecN [Escherichia coli MS 116-1]
 gi|300957401|ref|ZP_07169615.1| DNA repair protein RecN [Escherichia coli MS 175-1]
 gi|300315836|gb|EFJ65620.1| DNA repair protein RecN [Escherichia coli MS 175-1]
 gi|300451538|gb|EFK15158.1| DNA repair protein RecN [Escherichia coli MS 116-1]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|169618920|ref|XP_001802873.1| hypothetical protein SNOG_12652 [Phaeosphaeria nodorum SN15]
 gi|111058830|gb|EAT79950.1| hypothetical protein SNOG_12652 [Phaeosphaeria nodorum SN15]
          Length = 1177

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           ++I  L I  +++YA   +   +D       G NG GK+NIL++I F+         R  
Sbjct: 1   MRIIELVIDGYKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGINNLSVVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARV-----------EGMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSKSPVGFEEHAQISVTRQIVLGGASKYL-ING 119

Query: 108 VVIRVVD 114
              +   
Sbjct: 120 HRAQQQS 126


>gi|73670040|ref|YP_306055.1| ABC transporter ATP-binding protein [Methanosarcina barkeri str.
           Fusaro]
 gi|72397202|gb|AAZ71475.1| ABC transporter, ATP-binding protein [Methanosarcina barkeri str.
           Fusaro]
          Length = 274

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 13/97 (13%)

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           K  +    S GE+K V +   LA             +LLLDE +A LD   +  L  ++ 
Sbjct: 141 KDRSPHTLSGGEKKKVCIAAVLA---------NNPDVLLLDEPTAGLDPRTQLWLVELLQ 191

Query: 340 DIG--SQIFMTGT-DKSVFDSLNETAKFMRISNHQAL 373
           ++G   +  +T T D    + +++ A  M   +H+ +
Sbjct: 192 ELGKAGKTIITATHDLETVEQISKRAIVMG-EDHRII 227


>gi|17553272|ref|NP_497935.1| SMC (structural maintenance of chromosomes) family member (smc-4)
           [Caenorhabditis elegans]
 gi|29427679|sp|Q20060|SMC4_CAEEL RecName: Full=Structural maintenance of chromosomes protein 4;
           Short=SMC protein 4; Short=SMC-4
 gi|3876724|emb|CAA86336.1| C. elegans protein F35G12.8, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1549

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 2   TNRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
            +R+ I+ + +  F++Y   +    F    T  +G NG GK+N+++++ F+   R    R
Sbjct: 87  ADRLMIRNVEVDNFKSYFGKASIGPFHKSFTSIIGPNGSGKSNLIDSLLFVFGFRASKIR 146

Query: 58  RASYADVTR 66
            A  +++  
Sbjct: 147 SAKVSNLIH 155


>gi|14250918|emb|CAC39247.1| SMC5 protein [Homo sapiens]
          Length = 1101

 Score = 44.9 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 7/130 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  +++  F  Y    +       + VG NG GK++I+ AI     G+         V  
Sbjct: 53  IVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 112

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN      ++V+E    L I  
Sbjct: 113 FVKRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQV 172

Query: 125 -----LVPSM 129
                 +P  
Sbjct: 173 GNLCQFLPQD 182


>gi|317013648|gb|ADU81084.1| hypothetical protein HPGAM_01170 [Helicobacter pylori
          Gambia94/24]
          Length = 1066

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 19/90 (21%)

Query: 10 LNISEFRNYAS-------LRLVFDA---QHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          L +  FRN          L   FD       + VG+N VGK+N+LEA++           
Sbjct: 8  LKLHHFRNLGRKSPAKLLLNSSFDEKHGGLVVLVGENNVGKSNVLEALTIF--------- 58

Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADIS 89
          + AD+       +F  + +    + L  + 
Sbjct: 59 NDADIKLCSEEDYFKDYEKDHEKDTLLSLE 88


>gi|312880555|ref|ZP_07740355.1| SMC domain protein [Aminomonas paucivorans DSM 12260]
 gi|310783846|gb|EFQ24244.1| SMC domain protein [Aminomonas paucivorans DSM 12260]
          Length = 394

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTN 42
          + I+ L+I  +R+  ++         I +G NG GK+N
Sbjct: 1  MNIEQLDIEGYRSLRNVSWRPG-NLNIIIGPNGSGKSN 37


>gi|294783387|ref|ZP_06748711.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
 gi|294480265|gb|EFG28042.1| conserved hypothetical protein [Fusobacterium sp. 1_1_41FAA]
          Length = 413

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ-----HTIFVGDNGVGKTNILEAI 47
          +KI+ ++I   +    L L            +  G NG GKT ILE+I
Sbjct: 1  MKIEKVHIKNIKGIKDLELSLKKDNKILDVIVLAGVNGSGKTTILESI 48


>gi|291545453|emb|CBL18561.1| DNA replication and repair protein RecN [Ruminococcus sp. SR1/5]
          Length = 403

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 10/74 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   + +K L +          + F     I  G+ G GK+ +L +I  +  G+  R   
Sbjct: 1  MLVHLHVKNLAL-----IEESEVEFGPGLNILTGETGAGKSILLGSIQLILGGKTSRS-- 53

Query: 61 YADVTRIGSPSFFS 74
             + R  +     
Sbjct: 54 ---MIRENASYALV 64


>gi|198458384|ref|XP_001361018.2| GA19522 [Drosophila pseudoobscura pseudoobscura]
 gi|198136325|gb|EAL25594.2| GA19522 [Drosophila pseudoobscura pseudoobscura]
          Length = 1312

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 7  IKFLNISEFRNYAS-----LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I  L+I   R++ S       L F +  T+ +G+NG GKT ++E I +   G  
Sbjct: 4  IDKLSIQGVRSFGSNAEDLQSLTFSSPVTLILGENGCGKTTVIECIKYALTGES 57


>gi|91216771|ref|ZP_01253735.1| hypothetical protein P700755_04537 [Psychroflexus torquis ATCC
          700755]
 gi|91184932|gb|EAS71311.1| hypothetical protein P700755_04537 [Psychroflexus torquis ATCC
          700755]
          Length = 376

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I+ + I  F++             + +G NG GK++ ++++  L
Sbjct: 2  IESIEIKNFKSIKEKHFNL-KNLNVLLGLNGQGKSSFIQSLLLL 44


>gi|194427848|ref|ZP_03060394.1| DNA repair protein RecN [Escherichia coli B171]
 gi|194414081|gb|EDX30357.1| DNA repair protein RecN [Escherichia coli B171]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|332832147|ref|XP_520066.3| PREDICTED: structural maintenance of chromosomes protein 5 [Pan
           troglodytes]
          Length = 1101

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 7/130 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  +++  F  Y    +       + VG NG GK++I+ AI     G+         V  
Sbjct: 53  IVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 112

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN      ++V+E    L I  
Sbjct: 113 FVKRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQV 172

Query: 125 -----LVPSM 129
                 +P  
Sbjct: 173 GNLCQFLPQD 182


>gi|320159463|ref|YP_004172687.1| DNA repair protein RecN [Anaerolinea thermophila UNI-1]
 gi|319993316|dbj|BAJ62087.1| DNA repair protein RecN [Anaerolinea thermophila UNI-1]
          Length = 580

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 62/196 (31%), Gaps = 30/196 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L L F      F G+ G GK+ IL+AI+ +  G+         + R
Sbjct: 2   LSELRIENFAIIDHLTLTFRPGLIAFTGETGAGKSIILDAIAAVIGGK-----VEPAMIR 56

Query: 67  IGSPSFFS-------------TFARVEGMEGLADISIKLETRD-DRSVRCL-QINDVVIR 111
            G+                      +E  + L D    L  R+  R  R + ++N   + 
Sbjct: 57  AGAERALVEATFSLPEEIRPAVHEILEREDLLDDPETLLLAREIRREGRSVARVNGRAVS 116

Query: 112 V--VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
              + EL  +L           + +    E    LDR     D      + D+ +    R
Sbjct: 117 AGLMRELGSYLVDIHGQSEHLSLLNV--KEHIHLLDRFAGLQD-----ALDDYRKA-YQR 168

Query: 170 NRLLTEGYFDSSWCSS 185
            + +           +
Sbjct: 169 LQGMRRELDKLRQMEA 184


>gi|257484221|ref|ZP_05638262.1| hypothetical protein PsyrptA_13257 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331008292|gb|EGH88349.1| hypothetical protein PSYTB_00969 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 571

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 69/385 (17%), Positives = 123/385 (31%), Gaps = 76/385 (19%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYA 62
           ++I  L +  FR   SL         +  +G     KT +L+AI + LSP          
Sbjct: 1   MRIAKLVVHNFRGIRSLTWQPGSQAMSCIIGPGDSAKTTVLDAIEATLSP---------- 50

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRD-DRSVRCLQINDVVIRVVDELNKHLR 121
                G P F            L  I I++   +  +++   Q   + IR + +      
Sbjct: 51  RWITFGEPDF-------HLGNSLNPIKIEVTIAELSKALLSDQRFGLYIRGLAD----DG 99

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF--ERLMRGRNRLLTEGYFD 179
             +  P         ++  R  +D  +   +P        +   R++  R+R L    F 
Sbjct: 100 TVYDEPEAHH---DPALTIRLTVDATM---EPVWELICDRYPTPRVLSNRDRSL----FG 149

Query: 180 SSWCSSIEAQMAELGVKINIARVE-----MINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
               +  EA+    G    +AR+        N L+       Q  N      S++  +D 
Sbjct: 150 VVRLAGEEARHLTWGQGSVLARMTGDTEGAANQLADAYRVAKQTANLS----SISSLVD- 204

Query: 235 KFDQSFCALKEEYAKKL----FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
                  A  E+ AK+L      G   D    R           +   D    +     G
Sbjct: 205 -----TAARAEQLAKQLGAYVNHGYGPDLELGRGGFSSGS----IALHDGTTPLRMSGLG 255

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR----------NALFRIVTD 340
            +++  + I  A  +          I+L+DEI   L+  +             L +  + 
Sbjct: 256 TRRLATLAIQRASIK-------EGAIVLVDEIEQGLEPHRVLGAVSALRNAQELAKSSSA 308

Query: 341 IGSQIFMTGTDKSVFDSLNETAKFM 365
              Q+ +T   + V   L   A F+
Sbjct: 309 PTGQLLITTHSEVVLSELKSNALFV 333


>gi|302924127|ref|XP_003053819.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734760|gb|EEU48106.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1955

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          KI  L+IS  R+++      + F+   T+ VG NG GKT I+E + + + G
Sbjct: 3  KIDKLSISGVRSFSPSVREAIQFNTPLTLIVGYNGSGKTTIIECLKYATTG 53


>gi|160945189|ref|ZP_02092415.1| hypothetical protein FAEPRAM212_02708 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442920|gb|EDP19925.1| hypothetical protein FAEPRAM212_02708 [Faecalibacterium prausnitzii
           M21/2]
          Length = 556

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 66/211 (31%), Gaps = 40/211 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADVT 65
           +  L I          + F+    +  G+ G GK+ ++++I + L      R +    + 
Sbjct: 2   LSSLQIENVAVIQKAEVHFEPGLNVLTGETGAGKSILIDSINAILGN----RTSKD--LV 55

Query: 66  RIGSPSFFSTFA------------RVEGMEGLADISIKLETRDDRSVRCLQINDVV--IR 111
           R G+       A               G E    + +  E   +      +IN +     
Sbjct: 56  RTGAAKAVIRAAFEQVPPAVLDKLEQSGYERSEALLLSREITAEGKS-SCRINGMPATAA 114

Query: 112 VVDELNK--------HLRISWLVPS-MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF 162
           V+ EL          H  +  L P+    I    +  R  F           +     + 
Sbjct: 115 VLRELCGGLININGQHDSVGLLNPAHHLGILDDYAQNRTVF---------QEYYALYREL 165

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
            R+ R  + L+T+          ++ Q+ E+
Sbjct: 166 VRVKRELDALITDEAEKQRKIDLLQYQVQEI 196


>gi|157364842|ref|YP_001471609.1| chromosome segregation protein SMC [Thermotoga lettingae TMO]
 gi|157315446|gb|ABV34545.1| chromosome segregation protein SMC [Thermotoga lettingae TMO]
          Length = 1175

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 8/117 (6%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           +K+  + +S F+++A   +L F    T  +G NG GK+NI++AI ++   +  ++     
Sbjct: 1   MKLVSMALSGFKSFARPTKLFFADGITAIIGPNGGGKSNIVDAIRWVFGEQSMKQLRAEE 60

Query: 63  --DVTRIGS---PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
             DV   GS   P+  S +  +        + +      D       +N  V+R+ D
Sbjct: 61  KYDVIFAGSSKIPAATSAYVELSFENEDEKLVVSRLLTSDGKN-QYMLNGEVVRLKD 116


>gi|15674730|ref|NP_268904.1| hypothetical protein SPy_0663 [Streptococcus phage 370.1]
 gi|13621853|gb|AAK33625.1| hypothetical protein, phage associated [Streptococcus phage
          370.1]
          Length = 439

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPG 53
          I  L I   +   ++++   A   TI  G+N  GKT++L+AI++   G
Sbjct: 5  INKLEIENVKRIKAVKIEPSATGLTIIGGNNNQGKTSVLDAIAWALGG 52


>gi|207092726|ref|ZP_03240513.1| hypothetical protein HpylHP_07721 [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 538

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 24/138 (17%)

Query: 10  LNISEFRNYAS-------LRLVFDA---QHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           L +  FRN          L   FD       + VG+N VGK+N+LEA++           
Sbjct: 8   LKLHHFRNLGRKSPTKLLLNSSFDEKHGGLVVLVGENNVGKSNVLEALTIF--------- 58

Query: 60  SYADVTRIGSPSFFSTFARVE----GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
           + ADV       +F    +        E + D  I   +  D  ++  +I    ++ + +
Sbjct: 59  NDADVKLCSEEDYFKDHEKDSLLSLEEEAILDHKITGFSCVDLKIQTKEI-GEGLKELSK 117

Query: 116 LNKHLRISWLVPSMDRIF 133
           +         V S   + 
Sbjct: 118 ILISYPFCVFVGSFINLI 135


>gi|78189705|ref|YP_380043.1| DNA repair protein RecN [Chlorobium chlorochromatii CaD3]
 gi|78171904|gb|ABB29000.1| DNA replication and repair protein RecN [Chlorobium chlorochromatii
           CaD3]
          Length = 574

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 67/202 (33%), Gaps = 20/202 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           +  L+I        L +VF    TI  G+ G GK+ +++++S +   R      R  +  
Sbjct: 2   LASLSIKNIALIEELTVVFHPSLTIITGETGAGKSILMDSLSLVMGDRASSSMIRTGANK 61

Query: 63  DVTRI-----GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN-----DVVIRV 112
            V         S +  +  A         ++ ++ E   +   RC   +      ++ + 
Sbjct: 62  AVIEAILTDVHSETIEALLADAAIDSRQGELILRRELAANGQSRCFMNDTPCTLSLLRQA 121

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR-HRRRMIDFERLMRGRNR 171
            +EL              ++    +       D      +   + R     ++L   R+ 
Sbjct: 122 AEELIDLHGQ-----HEHQLLLRSATHEGLLDDFAQAHHERATYSRCYQHLQQLQAQRSA 176

Query: 172 LLTEGYFDSSWCSSIEAQMAEL 193
           L+ +          ++ Q+ EL
Sbjct: 177 LVEKAQSLRDKKEFLDFQLQEL 198


>gi|328876510|gb|EGG24873.1| structural maintenance of chromosome protein [Dictyostelium
          fasciculatum]
          Length = 1476

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDA--QHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I  L +  F++Y    +      Q +  +G NG GK+N+++AI+F+     
Sbjct: 4  IDSLEVKNFKSYKGTHI-LGPFLQFSCVIGPNGSGKSNLMDAITFVLGVSS 53


>gi|322506544|gb|ADX01998.1| Recombination and DNA repair protein [Acinetobacter baumannii
           1656-2]
          Length = 559

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 35/190 (18%), Positives = 60/190 (31%), Gaps = 25/190 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R   
Sbjct: 1   MDAFM-LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT-- 54

Query: 61  YADVTRIGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVR-CLQIND 107
             +  R GS     T                E         I L      + R    +N 
Sbjct: 55  DTNYVRYGSDKADVTAVFTYQDNSPEAKWLKEHELDDDSGEIHLRRVIFATGRSKAWVNG 114

Query: 108 VV--IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFE 163
               +  + EL + L   +   S  ++        + +LDR    +A     R     ++
Sbjct: 115 RPSSLSELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDRYSNFYAEANDVREAYSTWQ 172

Query: 164 RLMRGRNRLL 173
           R +R     L
Sbjct: 173 RNIRQHQAAL 182


>gi|306824633|ref|ZP_07457978.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
          str. 73H25AP]
 gi|304433201|gb|EFM36172.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071
          str. 73H25AP]
          Length = 391

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 27/50 (54%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + ++ + I+ +++YA    +  ++  +  G N  GKT+ +E++  L   R
Sbjct: 1  MVLRSVTINNYKSYAVETTINCSKLNVLAGTNSSGKTSFIESLLILGQLR 50


>gi|260173822|ref|ZP_05760234.1| DNA repair protein recN (recombination protein N) [Bacteroides sp.
           D2]
 gi|315922085|ref|ZP_07918325.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695960|gb|EFS32795.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 17/201 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  R  +  
Sbjct: 2   LRSLYIQNYALIEKLDISFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRHGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            +   R   S      F     +E   +  ++ E +     R   IND       V EL 
Sbjct: 62  CIIEARFDISAYGMRPFFEENELEYDEECILRREVQSSGKSRAF-INDTPASLAQVKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMV---FAIDPRHR--RRMIDFERLMRGRNRL 172
           + L           +       +   LD +     A++  H         +R +     L
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLDILAHNDAALEKYHLCYDEWKQTDRELAELVSL 178

Query: 173 LTEGYFDSSWCSSIEAQMAEL 193
             +   D  +      Q+ E 
Sbjct: 179 AEKSRSDEDYIRFQLEQLEEA 199


>gi|312109710|ref|YP_003988026.1| ATPase AAA [Geobacillus sp. Y4.1MC1]
 gi|311214811|gb|ADP73415.1| AAA ATPase [Geobacillus sp. Y4.1MC1]
          Length = 561

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          IK + I +FR    ++     + T+  G NG+GK+ IL  I+  S  +G 
Sbjct: 9  IKSIYIKKFRKLKEIKFDIAERITVIAGHNGIGKSTILGLIANGSELKGH 58


>gi|110678649|ref|YP_681656.1| chromosome segregation protein, putative [Roseobacter denitrificans
           OCh 114]
 gi|109454765|gb|ABG30970.1| chromosome segregation protein, putative [Roseobacter denitrificans
           OCh 114]
          Length = 1169

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           ++   L ++ F+++     LV     T  VG NG GK+N+LEA+   +   R    R   
Sbjct: 19  VRFSKLRLTGFKSFVDPTDLVIADGLTGVVGPNGCGKSNLLEALRWVMGENRPTAMRGGG 78

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADIS---------IKLETRDDRSVRCLQIN 106
             DV   G+      +F     +++  E LA            ++  TRD  S   +   
Sbjct: 79  MEDVIFAGASTRPARNFAEVSLQIDNSERLAPAGFNDDDVLEIVRRITRDVGSAYKVGAR 138

Query: 107 DVVIRVVDELNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
           DV  R V  L          P++ R      + +     RRR L+
Sbjct: 139 DVRARDVQMLFADASTGAHSPALVRQGQIAELINAKPKSRRRILE 183


>gi|91224631|ref|ZP_01259892.1| predicted ATP-dependent endonuclease of the OLD family protein
           [Vibrio alginolyticus 12G01]
 gi|91190519|gb|EAS76787.1| predicted ATP-dependent endonuclease of the OLD family protein
           [Vibrio alginolyticus 12G01]
          Length = 608

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 58/403 (14%), Positives = 113/403 (28%), Gaps = 65/403 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY--- 61
           +K+K + I  FR      +  D   T  VG N +GK+ IL AI   +             
Sbjct: 1   MKLKKVVIENFRGITFAAIDVDD-FTTLVGRNNIGKSTILSAIRI-ALNTSHPTLDDWPN 58

Query: 62  ----ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                +  RI        F  ++  E       +L   ++  +R   I            
Sbjct: 59  KACSEEPMRITCE-----FGDIQEWEKRKPAISQLMDGENLKIRMEGIWTEEGGSPAYKY 113

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----------- 166
                    P         +  +  FL  ++ A+D    +   D+ + +           
Sbjct: 114 YVHNEKITTPFDG--VKITAARKDEFLSTVLAALD---IKDAADYNQRLGEIEQYVIENH 168

Query: 167 ---RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
                R+    E  F +S   +I   M           +++ +  S        K  FP 
Sbjct: 169 EDKVERSTGWHEKSFANSLQQAIPHVMYVPASFRIEEDLKVTSNTSP-FSILFNKRLFPK 227

Query: 224 IK--LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS---DLIVDYC 278
           +K   S + ++D     S     +       +G   +  +  + +         + +   
Sbjct: 228 VKGDDSYSEYIDKARLLSEKLKGQAKDGTCIEGLNAELETLSSTLNQIIDFDSKVKLTVG 287

Query: 279 DKAITIAH-------------------GSTGEQKVVLVGIFL--AHARLISNTTGFAPIL 317
           D  I  A                    GS G Q+ +   +    A    +        I+
Sbjct: 288 DIDIETAFRKAATLLIDEQLETSLVYQGS-GVQRALAFALLEGNASVDAVVEGGQRTTIV 346

Query: 318 LLDEISAHLDEDKRNALFRIVTD----IGSQIFMTGTDKSVFD 356
           L +E   ++       L   +      +  Q+  +     + D
Sbjct: 347 LYEEPELYIHPHLMRRLKDTLHSRSETVEWQVICSTHSPFLID 389


>gi|157157277|ref|YP_001463935.1| recombination and repair protein [Escherichia coli E24377A]
 gi|157079307|gb|ABV19015.1| DNA repair protein RecN [Escherichia coli E24377A]
          Length = 553

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|332829955|gb|EGK02583.1| hypothetical protein HMPREF9455_00833 [Dysgonomonas gadei ATCC
          BAA-286]
          Length = 709

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          K+    +  FR+      +  A ++  VG N  GKTN+L A+  L+P 
Sbjct: 4  KLDRFKVYNFRSIEESDWIEVADNSCLVGTNEAGKTNLLIALWKLNPA 51


>gi|320166843|gb|EFW43742.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 625

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +  L +  F+ +  L   F +   +  G NG GKT +L AI
Sbjct: 31 LLSLRLQNFKRFHDLVFKFSSSPKVIAGRNGFGKTQLLWAI 71


>gi|237750312|ref|ZP_04580792.1| predicted protein [Helicobacter bilis ATCC 43879]
 gi|229374206|gb|EEO24597.1| predicted protein [Helicobacter bilis ATCC 43879]
          Length = 674

 Score = 44.9 bits (105), Expect = 0.023,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 70/186 (37%), Gaps = 31/186 (16%)

Query: 183 CSSIEAQMAELGVKINIA---RVEM---INALSSLIMEYVQKENFPHIKLSLTGFLDGKF 236
             + + ++A+   ++      R+E+   I +L         + N   I   L      K 
Sbjct: 453 IKAYKEELAQKNKELIEKQQIRLELNNKIESLEKEKSLLYARINTERINKKL------KV 506

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRR-------------TLIGPHRS-DLIVDYCDKA- 281
            +S   +  EY ++L +  + +                    +G  +  D+ +   D   
Sbjct: 507 LESLQHIITEYKEQLIETLREELCRGIKESYKTLLPNDNIVSVGMGQDFDITLKDIDGNE 566

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
           I++A+ S+G+++++ + I       +S  +     L++D   A +D   R  + +     
Sbjct: 567 ISVANQSSGQKQILAIAI----FWTLSKLSHSTIPLIIDTPLARIDATNRQRIIQNYYAK 622

Query: 342 GSQIFM 347
           G Q+ +
Sbjct: 623 GHQVIV 628


>gi|332292349|ref|YP_004430958.1| ABC transporter [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170435|gb|AEE19690.1| ABC transporter [Krokinobacter diaphorus 4H-3-7-5]
          Length = 576

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 5  IKIKFLNISE-FRN-YASLRLVFDAQHT--------IFVGDNGVGKTNILEAISFLSPGR 54
          +K+  L I + FR+ +    + F              F G NG GK+N+LEA++ +    
Sbjct: 1  MKLLNLTIQDEFRSLHKGFSINFHKNLDSMDTFQPFCFAGLNGSGKSNVLEALASIFYHL 60

Query: 55 GFRRASYAD 63
           F  A +  
Sbjct: 61 EFCVAKFRP 69


>gi|281206402|gb|EFA80589.1| structural maintenance of chromosome protein [Polysphondylium
           pallidum PN500]
          Length = 1324

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFR 57
           T R+ IK + +  F++YA  ++   F    T  +G NG GK+N+++A+ F+     +  R
Sbjct: 66  TRRLMIKMMELENFKSYAGKQVIGPFHKCFTSVIGPNGSGKSNVIDAMLFVFGRRAKQIR 125

Query: 58  RASYADVTRIGSPSFFSTFARV 79
               +++    S       ARV
Sbjct: 126 LNKVSELVHNSSQHRNVQSARV 147


>gi|74003562|ref|XP_861587.1| PREDICTED: similar to Structural maintenance of chromosomes
          4-like 1 protein (Chromosome-associated polypeptide C)
          (hCAP-C) (XCAP-C homolog) isoform 4 [Canis familiaris]
          Length = 1216

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2  TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
            R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 7  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 66

Query: 58 RASYADVTRIGSPSFFSTFARVEGMEGLA 86
              + +              VE      
Sbjct: 67 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 95


>gi|51595483|ref|YP_069674.1| recombination and repair protein [Yersinia pseudotuberculosis IP
           32953]
 gi|51588765|emb|CAH20379.1| DNA repair protein RecN [Yersinia pseudotuberculosis IP 32953]
          Length = 559

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 83/277 (29%), Gaps = 34/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 8   LVQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAVDALGLCLGNRS-----DGSMVR 62

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E      +    L        R    IN   V +  
Sbjct: 63  LGATRADICARFSLADTPSARQWLENNHLDDNNECLLRRAIGADGRSRGFINGTPVPVSQ 122

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMI 160
           + EL +HL       +   +       +++ LD            +  + I  +  R + 
Sbjct: 123 LRELGQHLIQIHGQHAHQLLLK--PDHQKQLLDAYANQSSLLAEMKAAYQIWHQSCRDLA 180

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKE 219
             ++    R        +     +S   Q  E   + I   R+     L SL  + +Q  
Sbjct: 181 LHQQQSLERTARRELLQYQLKELNSFSPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL 240

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +       L+     K   +  A  +E    L +  +
Sbjct: 241 SDDEQNNILSQLYAAKHQLTELASMDEQFNNLLNMLE 277


>gi|121998262|ref|YP_001003049.1| DNA repair protein RecN [Halorhodospira halophila SL1]
 gi|121589667|gb|ABM62247.1| DNA replication and repair protein RecN [Halorhodospira halophila
           SL1]
          Length = 556

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 92/279 (32%), Gaps = 41/279 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I +F     L L F     +  G+ G GK+ +L+A+      R     + A++ R
Sbjct: 2   LREIHIRDFAIVERLDLEFGEGMHVLTGETGAGKSILLDALGLCLGDR-----AKAEIVR 56

Query: 67  IGSPSFFSTFARV------------EGMEGLADISIKLETRDDRSVRCLQINDVVIRV-- 112
            G+     +                  +EG  ++ ++   + +   R   IN   + +  
Sbjct: 57  PGTDRAEVSAVFDPPSTRIARWLAERELEGEDEVIVRRVIQSNGRSRGF-INGTPVALQM 115

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + EL + L       +   +       +R  LD         +     +  R +  R R 
Sbjct: 116 LRELGEQLVDIHGQHAHQSLLR--PATQRELLD--------AYAEA-TEARREVAERFRE 164

Query: 173 LTEGYFDSSWCSS----IEAQMAELGVKINIARVEM-----INALSSLIMEYVQKENFPH 223
           L +   + +         E ++A L  +++           +  L +        E+   
Sbjct: 165 LRDLDRELTDLEGQDNDYEDRLALLRHQVDELEAAAPSPDGLTELENEHQRLAHAESLIT 224

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
           +  +    L    D +  AL     ++L + R +     
Sbjct: 225 LAQTQLQALSDD-DHAAQALLGRAVRELEERRDLAPALG 262


>gi|238788240|ref|ZP_04632035.1| DNA repair protein recN [Yersinia frederiksenii ATCC 33641]
 gi|238723827|gb|EEQ15472.1| DNA repair protein recN [Yersinia frederiksenii ATCC 33641]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 84/272 (30%), Gaps = 24/272 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-----RRASY 61
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         A+ 
Sbjct: 2   LAQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAIDALGLCLGSRSEGSMVRLGATR 61

Query: 62  ADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRVVDELN 117
           AD+  R       S    +E           L        R    IN   V +  + EL 
Sbjct: 62  ADICARFSLADTPSARQWLENNHLDDSNECLLRRAIGTDGRSRGFINGTAVPLSQLRELG 121

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMIDFERL 165
           +HL       +   +       +++ LD            +  + I  +  R +   ++ 
Sbjct: 122 QHLIQIHGQHAHQLLLR--PDHQKQLLDAYADQSTLLAEMKAAYQIWHQSCRTLALHQQQ 179

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKENFPHI 224
              RN       +     +S   Q  E   + I   R+     L SL  + +Q  +    
Sbjct: 180 SLERNARHELLQYQLKELNSFSPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLLSDDEQ 239

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
              L+     K   +  A  +E    L +  +
Sbjct: 240 NNILSQLYSAKHQLTELAGMDEQFNNLLNMLE 271


>gi|117925060|ref|YP_865677.1| DNA repair protein RecN [Magnetococcus sp. MC-1]
 gi|117608816|gb|ABK44271.1| DNA replication and repair protein RecN [Magnetococcus sp. MC-1]
          Length = 560

 Score = 44.5 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I        L L F    ++  G+ G GK+ IL+++  +   R     + A + R
Sbjct: 2  LRQLTIEHVALIERLELEFGPGLSVITGETGAGKSIILDSLGLILGER-----ADAGLIR 56

Query: 67 IGSPSFFSTFARV 79
           GS     +   +
Sbjct: 57 TGSERAMVSGYFI 69


>gi|311253094|ref|XP_003125390.1| PREDICTED: structural maintenance of chromosomes protein 6-like
           [Sus scrofa]
          Length = 1097

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 18/108 (16%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 54  IESIQLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAIATNRGSSLK 113

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
              + G  S              ADISI L  R D + R     D +I
Sbjct: 114 GFVKDGQNS--------------ADISITLRNRGDDAYRANVYGDSII 147


>gi|308187821|ref|YP_003931952.1| DNA repair protein recN (Recombination protein N) [Pantoea vagans
          C9-1]
 gi|308058331|gb|ADO10503.1| DNA repair protein recN (Recombination protein N) [Pantoea vagans
          C9-1]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L IS F     L + F    T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2  LAQLTISNFAIVRELDIDFQRGMTAITGETGAGKSIAIDALGLCLGGR-----ADADMVR 56

Query: 67 IGSPSF 72
           G+   
Sbjct: 57 QGASRA 62


>gi|302562405|ref|ZP_07314747.1| high affinity branched-chain amino acid ABC transporter,
          ATP-binding protein [Streptomyces griseoflavus Tu4000]
 gi|302480023|gb|EFL43116.1| high affinity branched-chain amino acid ABC transporter,
          ATP-binding protein [Streptomyces griseoflavus Tu4000]
          Length = 261

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 18 YASLRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            S+ L       +  +G NG GKT +L A+S     R  R A  A   R G
Sbjct: 29 LRSVSLTVPPGTVVALLGANGAGKTTLLRAVS--GTLRLHRGAITAGRIRYG 78


>gi|226314387|ref|YP_002774283.1| hypothetical protein BBR47_48020 [Brevibacillus brevis NBRC
          100599]
 gi|226097337|dbj|BAH45779.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 731

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +KI+ L +  F  +      F     +F   N  GK+ IL+ I     G
Sbjct: 1  MKIEELVLGSFGKWQDASFRFAPGINLFYAPNESGKSTILQGIFAALYG 49


>gi|254441306|ref|ZP_05054799.1| hypothetical protein OA307_721 [Octadecabacter antarcticus 307]
 gi|198251384|gb|EDY75699.1| hypothetical protein OA307_721 [Octadecabacter antarcticus 307]
          Length = 1144

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFD-----AQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          ++I+ L++  F ++      F          I  G N  GKT  +EA   L  G   R
Sbjct: 1  MRIQRLHLERFGHFTDQEFDFGNGGDRPDFHIIYGPNEAGKTTTMEAALRLFYGFPLR 58


>gi|186894536|ref|YP_001871648.1| recombination and repair protein [Yersinia pseudotuberculosis
           PB1/+]
 gi|186697562|gb|ACC88191.1| DNA repair protein RecN [Yersinia pseudotuberculosis PB1/+]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 83/277 (29%), Gaps = 34/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 2   LVQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAVDALGLCLGNRS-----DGSMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E      +    L        R    IN   V +  
Sbjct: 57  LGATRADICARFSLADTPSARQWLENNHLDDNNECLLRRAIGADGRSRGFINGTPVPVSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMI 160
           + EL +HL       +   +       +++ LD            +  + I  +  R + 
Sbjct: 117 LRELGQHLIQIHGQHAHQLLLK--PDHQKQLLDAYANQSSLLAEMKAAYQIWHQSCRDLA 174

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKE 219
             ++    R        +     +S   Q  E   + I   R+     L SL  + +Q  
Sbjct: 175 LHQQQSLERTARRELLQYQLKELNSFSPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL 234

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +       L+     K   +  A  +E    L +  +
Sbjct: 235 SDDEQNNILSQLYAAKHQLTELASMDEQFNNLLNMLE 271


>gi|209548262|ref|YP_002280179.1| chromosome segregation protein SMC [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534018|gb|ACI53953.1| chromosome segregation protein SMC [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 1153

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L +  F+++      + +   T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFNKLRLVGFKSFVEPTEFIIERGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       ++     A         I++  R +R      +IN  
Sbjct: 61  MDDVIFSGSGNRPARNTAEVALYLDNATRTAPAAFNDSDEIQVTRRIEREQGSLYRINGK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMD------RIFSGLSMERRRFLD 145
             R  D   L          PSM        +       RR+ L+
Sbjct: 121 ESRAKDVQLLFADASTGARSPSMVGQGRIGELIQAKPQARRQLLE 165


>gi|68060704|ref|XP_672341.1| DNA repair protein RAD50 [Plasmodium berghei strain ANKA]
 gi|56489322|emb|CAH94687.1| DNA repair protein RAD50, putative [Plasmodium berghei]
          Length = 272

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYAS---LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  + I   R+Y      +L F +  TI  G+NG GK+ I+E +     G
Sbjct: 4  LDKIGIQGIRSYCDEYSQQLEFSSPITIIYGNNGSGKSTIIECLKVNCTG 53


>gi|194439433|ref|ZP_03071509.1| DNA repair protein RecN [Escherichia coli 101-1]
 gi|253772491|ref|YP_003035322.1| recombination and repair protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162585|ref|YP_003045693.1| recombination and repair protein [Escherichia coli B str. REL606]
 gi|312973141|ref|ZP_07787314.1| DNA repair protein RecN [Escherichia coli 1827-70]
 gi|194421609|gb|EDX37620.1| DNA repair protein RecN [Escherichia coli 101-1]
 gi|242378210|emb|CAQ32985.1| protein used in recombination and DNA repair [Escherichia coli
           BL21(DE3)]
 gi|253323535|gb|ACT28137.1| DNA repair protein RecN [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974486|gb|ACT40157.1| recombination and repair protein [Escherichia coli B str. REL606]
 gi|253978653|gb|ACT44323.1| recombination and repair protein [Escherichia coli BL21(DE3)]
 gi|310333083|gb|EFQ00297.1| DNA repair protein RecN [Escherichia coli 1827-70]
 gi|323960526|gb|EGB56155.1| DNA repair protein RecN [Escherichia coli H489]
 gi|323971441|gb|EGB66677.1| DNA repair protein RecN [Escherichia coli TA007]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|49176247|ref|YP_026172.1| recombination and repair protein [Escherichia coli str. K-12
           substr. MG1655]
 gi|74313205|ref|YP_311624.1| recombination and repair protein [Shigella sonnei Ss046]
 gi|89109416|ref|AP_003196.1| recombination and repair protein [Escherichia coli str. K-12
           substr. W3110]
 gi|157162091|ref|YP_001459409.1| recombination and repair protein [Escherichia coli HS]
 gi|170019108|ref|YP_001724062.1| recombination and repair protein [Escherichia coli ATCC 8739]
 gi|170082218|ref|YP_001731538.1| recombination and repair protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|188492326|ref|ZP_02999596.1| DNA repair protein RecN [Escherichia coli 53638]
 gi|191167070|ref|ZP_03028891.1| DNA repair protein RecN [Escherichia coli B7A]
 gi|193065987|ref|ZP_03047046.1| DNA repair protein RecN [Escherichia coli E22]
 gi|193071256|ref|ZP_03052176.1| DNA repair protein RecN [Escherichia coli E110019]
 gi|194432959|ref|ZP_03065242.1| DNA repair protein RecN [Shigella dysenteriae 1012]
 gi|209920090|ref|YP_002294174.1| recombination and repair protein [Escherichia coli SE11]
 gi|218555195|ref|YP_002388108.1| recombination and repair protein [Escherichia coli IAI1]
 gi|218696239|ref|YP_002403906.1| recombination and repair protein [Escherichia coli 55989]
 gi|238901775|ref|YP_002927571.1| recombination and repair protein [Escherichia coli BW2952]
 gi|254037691|ref|ZP_04871749.1| recombination and repair protein [Escherichia sp. 1_1_43]
 gi|256019566|ref|ZP_05433431.1| recombination and repair protein [Shigella sp. D9]
 gi|256024858|ref|ZP_05438723.1| recombination and repair protein [Escherichia sp. 4_1_40B]
 gi|260845297|ref|YP_003223075.1| recombination and repair protein RecN [Escherichia coli O103:H2
           str. 12009]
 gi|260856704|ref|YP_003230595.1| recombination and repair protein RecN [Escherichia coli O26:H11
           str. 11368]
 gi|260869296|ref|YP_003235698.1| recombination and repair protein RecN [Escherichia coli O111:H-
           str. 11128]
 gi|293448967|ref|ZP_06663388.1| DNA repair protein RecN [Escherichia coli B088]
 gi|300825182|ref|ZP_07105272.1| DNA repair protein RecN [Escherichia coli MS 119-7]
 gi|300905063|ref|ZP_07122873.1| DNA repair protein RecN [Escherichia coli MS 84-1]
 gi|300921161|ref|ZP_07137539.1| DNA repair protein RecN [Escherichia coli MS 115-1]
 gi|300925609|ref|ZP_07141479.1| DNA repair protein RecN [Escherichia coli MS 182-1]
 gi|301026812|ref|ZP_07190214.1| DNA repair protein RecN [Escherichia coli MS 196-1]
 gi|301305739|ref|ZP_07211826.1| DNA repair protein RecN [Escherichia coli MS 124-1]
 gi|301326737|ref|ZP_07220051.1| DNA repair protein RecN [Escherichia coli MS 78-1]
 gi|307139336|ref|ZP_07498692.1| recombination and repair protein [Escherichia coli H736]
 gi|307315073|ref|ZP_07594657.1| DNA repair protein RecN [Escherichia coli W]
 gi|309794127|ref|ZP_07688551.1| DNA repair protein RecN [Escherichia coli MS 145-7]
 gi|331643332|ref|ZP_08344463.1| DNA repair protein RecN [Escherichia coli H736]
 gi|331669366|ref|ZP_08370212.1| DNA repair protein RecN [Escherichia coli TA271]
 gi|331678606|ref|ZP_08379280.1| DNA repair protein RecN [Escherichia coli H591]
 gi|332280689|ref|ZP_08393102.1| recombination and repair protein [Shigella sp. D9]
 gi|1710071|sp|P05824|RECN_ECOLI RecName: Full=DNA repair protein recN; AltName: Full=Recombination
           protein N
 gi|1800021|dbj|BAA16501.1| recombination and repair protein [Escherichia coli str. K12 substr.
           W3110]
 gi|48994901|gb|AAT48145.1| recombination and repair protein [Escherichia coli str. K-12
           substr. MG1655]
 gi|73856682|gb|AAZ89389.1| protein used in recombination and DNA repair [Shigella sonnei
           Ss046]
 gi|157067771|gb|ABV07026.1| DNA repair protein RecN [Escherichia coli HS]
 gi|169754036|gb|ACA76735.1| DNA repair protein RecN [Escherichia coli ATCC 8739]
 gi|169890053|gb|ACB03760.1| recombination and repair protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|188487525|gb|EDU62628.1| DNA repair protein RecN [Escherichia coli 53638]
 gi|190902852|gb|EDV62580.1| DNA repair protein RecN [Escherichia coli B7A]
 gi|192926401|gb|EDV81036.1| DNA repair protein RecN [Escherichia coli E22]
 gi|192955409|gb|EDV85892.1| DNA repair protein RecN [Escherichia coli E110019]
 gi|194418686|gb|EDX34772.1| DNA repair protein RecN [Shigella dysenteriae 1012]
 gi|209913349|dbj|BAG78423.1| DNA repair protein RecN [Escherichia coli SE11]
 gi|218352971|emb|CAU98771.1| recombination and repair protein [Escherichia coli 55989]
 gi|218361963|emb|CAQ99564.1| recombination and repair protein [Escherichia coli IAI1]
 gi|226839315|gb|EEH71336.1| recombination and repair protein [Escherichia sp. 1_1_43]
 gi|238863426|gb|ACR65424.1| recombination and repair protein [Escherichia coli BW2952]
 gi|257755353|dbj|BAI26855.1| recombination and repair protein RecN [Escherichia coli O26:H11
           str. 11368]
 gi|257760444|dbj|BAI31941.1| recombination and repair protein RecN [Escherichia coli O103:H2
           str. 12009]
 gi|257765652|dbj|BAI37147.1| recombination and repair protein RecN [Escherichia coli O111:H-
           str. 11128]
 gi|260448311|gb|ACX38733.1| DNA repair protein RecN [Escherichia coli DH1]
 gi|291322057|gb|EFE61486.1| DNA repair protein RecN [Escherichia coli B088]
 gi|299879558|gb|EFI87769.1| DNA repair protein RecN [Escherichia coli MS 196-1]
 gi|300403050|gb|EFJ86588.1| DNA repair protein RecN [Escherichia coli MS 84-1]
 gi|300411892|gb|EFJ95202.1| DNA repair protein RecN [Escherichia coli MS 115-1]
 gi|300418304|gb|EFK01615.1| DNA repair protein RecN [Escherichia coli MS 182-1]
 gi|300522344|gb|EFK43413.1| DNA repair protein RecN [Escherichia coli MS 119-7]
 gi|300838993|gb|EFK66753.1| DNA repair protein RecN [Escherichia coli MS 124-1]
 gi|300846597|gb|EFK74357.1| DNA repair protein RecN [Escherichia coli MS 78-1]
 gi|306905502|gb|EFN36036.1| DNA repair protein RecN [Escherichia coli W]
 gi|308122032|gb|EFO59294.1| DNA repair protein RecN [Escherichia coli MS 145-7]
 gi|309702995|emb|CBJ02326.1| DNA repair protein [Escherichia coli ETEC H10407]
 gi|315061929|gb|ADT76256.1| recombination and repair protein [Escherichia coli W]
 gi|315137233|dbj|BAJ44392.1| recombination and repair protein [Escherichia coli DH1]
 gi|315615315|gb|EFU95950.1| DNA repair protein RecN [Escherichia coli 3431]
 gi|320182471|gb|EFW57365.1| DNA repair protein RecN [Shigella boydii ATCC 9905]
 gi|323156270|gb|EFZ42429.1| DNA repair protein RecN [Escherichia coli EPECa14]
 gi|323159136|gb|EFZ45129.1| DNA repair protein RecN [Escherichia coli E128010]
 gi|323167739|gb|EFZ53434.1| DNA repair protein RecN [Shigella sonnei 53G]
 gi|323173067|gb|EFZ58698.1| DNA repair protein RecN [Escherichia coli LT-68]
 gi|323177258|gb|EFZ62846.1| DNA repair protein RecN [Escherichia coli 1180]
 gi|323184508|gb|EFZ69882.1| DNA repair protein RecN [Escherichia coli 1357]
 gi|323377491|gb|ADX49759.1| DNA repair protein RecN [Escherichia coli KO11]
 gi|323935670|gb|EGB31987.1| DNA repair protein RecN [Escherichia coli E1520]
 gi|323941367|gb|EGB37551.1| DNA repair protein RecN [Escherichia coli E482]
 gi|323946257|gb|EGB42290.1| DNA repair protein RecN [Escherichia coli H120]
 gi|324016598|gb|EGB85817.1| DNA repair protein RecN [Escherichia coli MS 117-3]
 gi|324120073|gb|EGC13949.1| DNA repair protein RecN [Escherichia coli E1167]
 gi|331036803|gb|EGI09027.1| DNA repair protein RecN [Escherichia coli H736]
 gi|331063034|gb|EGI34947.1| DNA repair protein RecN [Escherichia coli TA271]
 gi|331073436|gb|EGI44757.1| DNA repair protein RecN [Escherichia coli H591]
 gi|332088124|gb|EGI93249.1| DNA repair protein RecN [Shigella boydii 5216-82]
 gi|332089208|gb|EGI94315.1| DNA repair protein RecN [Shigella dysenteriae 155-74]
 gi|332103041|gb|EGJ06387.1| recombination and repair protein [Shigella sp. D9]
 gi|332344485|gb|AEE57819.1| DNA repair protein RecN [Escherichia coli UMNK88]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|328948497|ref|YP_004365834.1| hypothetical protein Tresu_1638 [Treponema succinifaciens DSM
          2489]
 gi|328448821|gb|AEB14537.1| hypothetical protein Tresu_1638 [Treponema succinifaciens DSM
          2489]
          Length = 666

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEFRNYASL-RLVFD----AQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + IK + +  FR +  L  + F        TI +G+NG GKT   +A  +   G+
Sbjct: 1  MLIKKITLENFRQFKGLQSVEFSEDNVKNITIILGENGAGKTTFAQAFRWCLYGK 55


>gi|325271389|ref|ZP_08137917.1| ATP-dependent OLD family endonuclease [Pseudomonas sp. TJI-51]
 gi|324103511|gb|EGC00830.1| ATP-dependent OLD family endonuclease [Pseudomonas sp. TJI-51]
          Length = 669

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +++  + +  +R+   +     +   TI VG N  GKT IL+AI
Sbjct: 1  MRLSKVRVQNYRSIIDTGEFEIERLKTILVGPNEAGKTAILQAI 44


>gi|320198388|gb|EFW72990.1| DNA repair protein RecN [Escherichia coli EC4100B]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|307153175|ref|YP_003888559.1| ATPase-like protein [Cyanothece sp. PCC 7822]
 gi|306983403|gb|ADN15284.1| ATPase-like protein [Cyanothece sp. PCC 7822]
          Length = 419

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 7  IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + FL +  ++N A    L       IF+G NG GK+N++  + FL
Sbjct: 2  LSFLYLQNYKNLALPDKLEL-KNLNIFIGSNGSGKSNLINCLKFL 45


>gi|156848089|ref|XP_001646927.1| hypothetical protein Kpol_2000p34 [Vanderwaltozyma polyspora DSM
          70294]
 gi|156117609|gb|EDO19069.1| hypothetical protein Kpol_2000p34 [Vanderwaltozyma polyspora DSM
          70294]
          Length = 1305

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I  L+I   R++ S     + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  AIYKLSIQGIRSFDSNDRETIEFGKPLTLIVGSNGSGKTTIIECLKYATTG 53


>gi|118590783|ref|ZP_01548184.1| Chromosome segregation ATPase [Stappia aggregata IAM 12614]
 gi|118436759|gb|EAV43399.1| Chromosome segregation ATPase [Stappia aggregata IAM 12614]
          Length = 1152

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 24/165 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRAS 60
           +K   L I  F+++   +  +     T  VG NG GK+N++EA+ ++     +   R + 
Sbjct: 1   MKFSKLRIVGFKSFVEPMEFIIGNGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADI------SIKLETRDDR-SVRCLQINDV 108
             DV   G     + +       +E  +  A        ++++  R +R      +IN  
Sbjct: 61  MDDVIFSGSLNRPARNTAEVTLYLENQDRTAPAAFNDADALEVSRRIEREQGSNYKINAK 120

Query: 109 VIRVVDE--LNKHLRISWLVPSMDR------IFSGLSMERRRFLD 145
            +R  D   L          P+M R      + +     RR+ L+
Sbjct: 121 DVRARDVQLLFADASTGARSPAMVRQGQIGELIAAKPTSRRQILE 165


>gi|150018287|ref|YP_001310541.1| SMC domain-containing protein [Clostridium beijerinckii NCIMB
          8052]
 gi|149904752|gb|ABR35585.1| SMC domain protein [Clostridium beijerinckii NCIMB 8052]
          Length = 248

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          IK L +    N  SL +      T FVG+NG GK+ +LEAI+  S
Sbjct: 24 IKELPVVN--NLTSLDI--SRNVTFFVGENGSGKSTLLEAIAVNS 64


>gi|327538827|gb|EGF25473.1| SMC domain protein [Rhodopirellula baltica WH47]
          Length = 387

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  + I+ +R+  SL +      T+  G NG GKTN+  ++  ++
Sbjct: 2  IHRIAIAGYRSIRSLTVRLGE-LTVVTGPNGSGKTNLYRSLRLIA 45


>gi|313886153|ref|ZP_07819885.1| conserved domain protein [Porphyromonas asaccharolytica
          PR426713P-I]
 gi|312924414|gb|EFR35191.1| conserved domain protein [Porphyromonas asaccharolytica
          PR426713P-I]
          Length = 371

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)

Query: 3  NRIKIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNIL 44
          NR+++  L+I  F++      + L F    T+ +G NG GK+NI+
Sbjct: 4  NRLRLTKLSIRGFKSIDTNEGVDLNFGD-ITLLMGANGAGKSNIV 47


>gi|241667201|ref|ZP_04754779.1| DNA repair protein RecN [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|254875753|ref|ZP_05248463.1| DNA repair protein recN [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
 gi|254841774|gb|EET20188.1| DNA repair protein recN [Francisella philomiragia subsp.
          philomiragia ATCC 25015]
          Length = 549

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++ L I  F    S  + F    T+  G+ G GK+ +L+A+SF+   R
Sbjct: 2  LQHLAIKNFAIIKSTEIDFREGMTVLTGETGAGKSILLDALSFVLGAR 49


>gi|227826945|ref|YP_002828724.1| hypothetical protein M1425_0595 [Sulfolobus islandicus M.14.25]
 gi|227458740|gb|ACP37426.1| conserved hypothetical protein [Sulfolobus islandicus M.14.25]
          Length = 299

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  +N+  FR       +   +  I VG+NG GKT+ LE+I   +  +     +  D+
Sbjct: 1   MNISEVNVEGFRGLKIATRL--KRINIVVGENGSGKTSFLESIFMSTLFQS--DINDNDI 56

Query: 65  ------TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
                          S F+ +   +   D  I    + D     ++IN+  +  +   + 
Sbjct: 57  YTFLIYILNSRGDILSAFSTLSDSKVRLDGVITQFKKIDPYSIDVEINNEKVAEIRVKSG 116

Query: 119 HLRISWLV 126
            L    L 
Sbjct: 117 ILTTETLS 124


>gi|190341655|gb|ACE74904.1| RecN [Cronobacter sakazakii]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|195154461|ref|XP_002018140.1| GL17546 [Drosophila persimilis]
 gi|194113936|gb|EDW35979.1| GL17546 [Drosophila persimilis]
          Length = 1312

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 7  IKFLNISEFRNYAS-----LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I  L+I   R++ S       L F +  T+ +G+NG GKT ++E I +   G  
Sbjct: 4  IDKLSIQGVRSFGSNAEDLQSLTFSSPVTLILGENGCGKTTVIECIKYALTGES 57


>gi|74317246|ref|YP_314986.1| condensin subunit Smc [Thiobacillus denitrificans ATCC 25259]
 gi|74056741|gb|AAZ97181.1| Chromosome segregation protein SMC [Thiobacillus denitrificans
          ATCC 25259]
          Length = 1165

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + ++ F+++    ++    Q T  VG NG GK+N+++A+ ++   S  +  R  +
Sbjct: 1  MRLTHIKLAGFKSFVDPTVIPVPAQLTGVVGPNGCGKSNVIDAVRWVLGESSAKHLRGET 60

Query: 61 YADVTRIGSPS 71
            DV   GS S
Sbjct: 61 MQDVIFNGSGS 71



 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 10/155 (6%)

Query: 199  IARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
             AR E + A  + + E V   ++    I       L   FD     + E + K    G+ 
Sbjct: 976  QARAEYLAAQCADLTEAVTTLEDAIRRIDQESRARLKETFDTVNQHMGELFPKLFGGGQA 1035

Query: 257  MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
               ++   L+             K  +I   S GE+ +  + +  A  +L       AP 
Sbjct: 1036 RLILTGEELLDSGVQVFAQPPGKKNASIHLLSGGEKTLTALSLVFAMFKL-----NPAPF 1090

Query: 317  LLLDEISAHLDEDKRNALFRIVTDIGSQI---FMT 348
             LLDE+ A LD+   +    +V  +  Q    F+T
Sbjct: 1091 CLLDEVDAPLDDANTDRYCNLVKAMSDQTQFLFIT 1125


>gi|38181589|gb|AAH61481.1| Smc4 protein [Mus musculus]
          Length = 1216

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2  TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
            R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 7  APRLMITHIVNQNFKSYAGEKVLGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 66

Query: 58 RASYADVTRIGSPSFFSTFARVEGMEGLA 86
              + +              VE      
Sbjct: 67 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 95


>gi|19074483|ref|NP_585989.1| RAD50-LIKE DNA REPAIR PROTEIN [Encephalitozoon cuniculi GB-M1]
 gi|74697545|sp|Q8SRK6|RAD50_ENCCU RecName: Full=DNA repair protein RAD50
 gi|19069125|emb|CAD25593.1| RAD50-LIKE DNA REPAIR PROTEIN [Encephalitozoon cuniculi GB-M1]
          Length = 1247

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          IK L I   R+++      L F +  T+ VG NG GKT I+E++ + + G
Sbjct: 4  IKKLMIRGVRSFSHKESNTLEFYSPLTLIVGANGTGKTTIIESLKYATTG 53


>gi|88857177|ref|ZP_01131820.1| hypothetical protein PTD2_01416 [Pseudoalteromonas tunicata D2]
 gi|88820374|gb|EAR30186.1| hypothetical protein PTD2_01416 [Pseudoalteromonas tunicata D2]
          Length = 758

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 67/184 (36%), Gaps = 29/184 (15%)

Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
              R ++++  S L +E +Q E     K +    L+     +  + K+   + L      
Sbjct: 431 IRYRQDVVDLFSQLALEKIQDETAKSEKQTKKDALNQIMQATLESYKDRINELL------ 484

Query: 258 DSMSRRTLIGPH---------RSDLIVDYCDKAITIAHG--------STGEQKVVLVGIF 300
                   + P+         RSD ++      I ++ G        S G+++ +    F
Sbjct: 485 -RGFGAQFLIPNIDFNYRGGLRSDYVLQMRGANIALSGGVPDFKTSLSEGDKRTLAFAFF 543

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNA---LFRIVTDIGSQIFMTGTDKSVFDS 357
           +A A    +      ++++D+    LD +++     + + + D   QI +   D     +
Sbjct: 544 IASAESDPDLANK--VIVIDDPMCSLDLNRKQQTRTVLKRLHDSCKQIIVLAHDVHFLRN 601

Query: 358 LNET 361
           L + 
Sbjct: 602 LRDD 605


>gi|332139522|ref|YP_004425260.1| DNA repair ATPase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549544|gb|AEA96262.1| DNA repair ATPase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 704

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 5  IKIKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK L++  F+ Y          F     + +G+NG GK+ + +   +
Sbjct: 1  MLIKSLSLKNFQCYCGELDQNHFCFKNGLNLIIGNNGNGKSKVFDGFYW 49


>gi|153950325|ref|YP_001401852.1| recombination and repair protein [Yersinia pseudotuberculosis IP
           31758]
 gi|152961820|gb|ABS49281.1| DNA repair protein RecN [Yersinia pseudotuberculosis IP 31758]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 83/277 (29%), Gaps = 34/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 2   LVQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAVDALGLCLGNRS-----DGSMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E      +    L        R    IN   V +  
Sbjct: 57  LGATRADICARFSLADTPSARQWLENNHLDDNNECLLRRAIGADGRSRGFINGTPVPVSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMI 160
           + EL +HL       +   +       +++ LD            +  + I  +  R + 
Sbjct: 117 LRELGQHLIQIHGQHAHQLLLK--PDHQKQLLDAYANQSSLLAEMKAAYQIWHQSCRDLA 174

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKE 219
             ++    R        +     +S   Q  E   + I   R+     L SL  + +Q  
Sbjct: 175 LHQQQSLERTARRELLQYQLKELNSFSPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL 234

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +       L+     K   +  A  +E    L +  +
Sbjct: 235 SDDEQNNILSQLYAAKHQLTELASMDEQFNNLLNMLE 271


>gi|320103664|ref|YP_004179255.1| DNA repair protein RecN [Isosphaera pallida ATCC 43644]
 gi|319750946|gb|ADV62706.1| DNA repair protein RecN [Isosphaera pallida ATCC 43644]
          Length = 564

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 76/260 (29%), Gaps = 32/260 (12%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L +         R+        + G+ G GK+ +L A+  +   +     +
Sbjct: 1   MLLEVSVKNLAL-----IEDARVELKPGLCAWTGETGAGKSLLLTALGLVMGAK-----A 50

Query: 61  YADVTRIGSPSFFSTFAR-------------VEGMEGLADISIKLETRDDRSVRCLQIND 107
             ++ R G     ++                V G E   +  I       +      +N 
Sbjct: 51  SPELVREGKEEARASAVFDLSDPLLKGEVEAVLGGEIEEETLIVTRRLGAQGRSWAHVNG 110

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP---RHRRRMIDFER 164
           V +           +  L    D         +R +LD     ++P   R+         
Sbjct: 111 VPVTAATLKALSSHLLDLHSQQDARALADPDRQRGWLD-AFGKLEPLRLRYCEARAVHAA 169

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           L++ R  L+            +  +  EL          ++     L  E  +  N    
Sbjct: 170 LLQRRRELVESAEQRDRELELLRFECEELAAA-----RPVVGEYEELQREARRLANARRF 224

Query: 225 KLSLTGFLDGKFDQSFCALK 244
           + ++ G     ++    A++
Sbjct: 225 REAVQGGHHWLYEADGSAVE 244


>gi|310828531|ref|YP_003960888.1| DNA repair and genetic recombination [Eubacterium limosum
          KIST612]
 gi|308740265|gb|ADO37925.1| DNA repair and genetic recombination [Eubacterium limosum
          KIST612]
          Length = 567

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  + I  +    +L +  D    +  G+ G GK+ +++A++ L   RG          R
Sbjct: 2  LLNIVIKNYALIEALNIDLDPGLNVITGETGAGKSIVIDALTLLLGQRG-----NKSNIR 56

Query: 67 IGSP 70
           G+ 
Sbjct: 57 HGAD 60


>gi|297539186|ref|YP_003674955.1| DNA repair protein RecN [Methylotenera sp. 301]
 gi|297258533|gb|ADI30378.1| DNA repair protein RecN [Methylotenera sp. 301]
          Length = 558

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 16/201 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L++ +F     L L F+   T+  G+ G GK+ +++A+S     R     + A   +
Sbjct: 2   LQSLSVRDFVIVNQLDLDFETGFTVLTGETGAGKSILIDALSLALGARAEGGVTRAGCDK 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRD--------DRSVRCLQIND--VVIRVVDEL 116
               + F+    +E  + L D  ++ E  +                IN   V +  + EL
Sbjct: 62  AEISAIFAITNNLEAKQWLVDAEMENEANELILRRVMYADGRSRAFINGATVTVAQLKEL 121

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE---RLMRGRNRLL 173
            + L   +   +   +       +R  LD     +     +    ++    L + R  + 
Sbjct: 122 GELLVDIYSQNAHHSLLK--LATQRNVLDNFGG-LSGLALQVSAQYKVWHALNQQRLEVE 178

Query: 174 TEGYFDSSWCSSIEAQMAELG 194
                 +   + +     EL 
Sbjct: 179 KNASAYADELADLRDNTRELA 199


>gi|94992057|ref|YP_600156.1| chromosome segregation ATPases [Streptococcus phage 2096.1]
 gi|94545565|gb|ABF35612.1| Chromosome segregation ATPases [Streptococcus phage 2096.1]
          Length = 446

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPG 53
          I  L I   +   ++++   A   TI  G+N  GKT++L+AI++   G
Sbjct: 12 INKLEIENVKRIKAVKIEPSATGLTIIGGNNNQGKTSVLDAIAWALGG 59


>gi|330817235|ref|YP_004360940.1| hypothetical protein bgla_1g23570 [Burkholderia gladioli BSR3]
 gi|327369628|gb|AEA60984.1| hypothetical protein bgla_1g23570 [Burkholderia gladioli BSR3]
          Length = 389

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L ++ +R+     +   A   +  G NG GK+++  A+  L+
Sbjct: 4  LTALAVANYRSLRDFIVPL-AGLNVVTGPNGSGKSSVYRALRLLA 47


>gi|282854539|ref|ZP_06263875.1| conserved hypothetical protein [Propionibacterium acnes J139]
 gi|282582400|gb|EFB87781.1| conserved hypothetical protein [Propionibacterium acnes J139]
 gi|314980699|gb|EFT24793.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3]
 gi|315090982|gb|EFT62958.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4]
          Length = 868

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDTGT-KASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            R   P   S    VE  
Sbjct: 60 KVRTAQPYGTSLQVVVEAE 78


>gi|261252215|ref|ZP_05944788.1| DNA repair protein RecN [Vibrio orientalis CIP 102891]
 gi|260935606|gb|EEX91595.1| DNA repair protein RecN [Vibrio orientalis CIP 102891]
          Length = 554

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 66/206 (32%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  + L      L     +  R    IN   +    
Sbjct: 57  QGEEKTEVSAAFSLDNNINATRWLEDNDLLDGSDCILRRIISKEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
           +  L + L       +  ++    S  +   LD+     +         +     +  ++
Sbjct: 117 LKSLGQLLINIHGQHAHHQLMK--SEYQMAMLDQYAGHSNLLKSTRNAYQSWRQADNNLK 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
               L      + +    +E Q+ EL
Sbjct: 175 Q---LKENSAANLAQKQLLEYQIKEL 197


>gi|190341649|gb|ACE74901.1| RecN [Cronobacter sakazakii]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|169830701|ref|YP_001716683.1| ATP-dependent endonuclease, OLD family protein [Candidatus
          Desulforudis audaxviator MP104C]
 gi|169637545|gb|ACA59051.1| ATP-dependent endonuclease, OLD family protein [Candidatus
          Desulforudis audaxviator MP104C]
          Length = 663

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  +++  FR+     L  D + T  VG NG GK+++L A+   
Sbjct: 1  MLISAVHVKNFRSILDDSLPCD-RLTALVGRNGAGKSSLLRALELF 45


>gi|167626644|ref|YP_001677144.1| DNA repair protein RecN [Francisella philomiragia subsp.
          philomiragia ATCC 25017]
 gi|167596645|gb|ABZ86643.1| DNA repair protein RecN [Francisella philomiragia subsp.
          philomiragia ATCC 25017]
          Length = 549

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++ L I  F    S  + F    T+  G+ G GK+ +L+A+SF+   R
Sbjct: 2  LQHLAIKNFAIIKSTEIDFREGMTVLTGETGAGKSILLDALSFVLGAR 49


>gi|153810619|ref|ZP_01963287.1| hypothetical protein RUMOBE_01003 [Ruminococcus obeum ATCC 29174]
 gi|149833015|gb|EDM88097.1| hypothetical protein RUMOBE_01003 [Ruminococcus obeum ATCC 29174]
          Length = 412

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 11/98 (11%)

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           +   D    IAH S G++K V +   L            A +L+LDE + HLD +  + L
Sbjct: 109 LGIEDHEEEIAHLSGGQKKRVALAAVL---------VNPADVLILDEPTNHLDNEMASWL 159

Query: 335 FRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
              +      + M   D+   D +    K + IS+ + 
Sbjct: 160 EDYLNRFKGVVIMVTHDRYFLDRVTN--KILEISHGKI 195


>gi|124023127|ref|YP_001017434.1| ABC transporter ATP-binding protein [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963413|gb|ABM78169.1| possible ABC transporter, ATP-binding component [Prochlorococcus
           marinus str. MIT 9303]
          Length = 210

 Score = 44.5 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 13/96 (13%)

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
            +        S G+Q+ + + + L              ILLLDE +A LD   R+ +  +
Sbjct: 120 INMKQAPERLSGGQQRRLALAVQL---------LRKPTILLLDEPTAGLDWSVRDEVLEL 170

Query: 338 VTDI-GSQIFMTGT-DKSVFDSLNETAKFMRISNHQ 371
           ++ +   Q+ +  T +  +F+ L+  A   R+ + Q
Sbjct: 171 LSKLARDQLLIVATHEPELFEGLSSAA--YRLDSGQ 204


>gi|332702018|ref|ZP_08422106.1| SMC domain protein [Desulfovibrio africanus str. Walvis Bay]
 gi|332552167|gb|EGJ49211.1| SMC domain protein [Desulfovibrio africanus str. Walvis Bay]
          Length = 531

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 10 LNISEFRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          L +   RN A    L L F        G+ G GK+ IL A++FL+  +        D+ R
Sbjct: 2  LELLRIRNLALIDDLELEFAPGLNALTGETGAGKSFILRAVNFLTGDK-----LTPDMVR 56

Query: 67 IGSP-SFFSTFARVEGMEGLADISIKLETRDDR 98
           G   +       VEG+E +    +  +T   R
Sbjct: 57 AGRDKAMVEALFVVEGVECVIRRELAADTGRSR 89


>gi|329314665|gb|AEB89078.1| RecF/RecN/SMC N terminal domain protein [Staphylococcus aureus
          subsp. aureus T0131]
          Length = 647

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          +KI  L IS F      +  FD +     G+N  GKT I  A+ +L   +G   ++
Sbjct: 1  MKINKLTISNFAGIKEEKFNFDGKDAKIYGNNATGKTTIATALQWLLFDKGLDGST 56


>gi|319400856|gb|EFV89075.1| DNA repair protein RecN [Staphylococcus epidermidis FRI909]
          Length = 558

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 84/256 (32%), Gaps = 28/256 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2   LQTLSIKQFAIIDELDINFSDGLTVMSGETGSGKSIIIDAIGQLI---GMRASSD--YVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G           +  E    I I      D     L +   +      + +      + 
Sbjct: 57  HGEKKAI-IEGIFDIDESKDAIKILESLAIDIDEDFLLVKREIFSSGKSICRINN-QTVT 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL-LTEGYFDSSWCSS 185
               R         +  LD               + + L++ +  L L + Y D+ +   
Sbjct: 115 LQDLR------KVMQELLDIHGQH----------ETQSLLKQKYHLQLLDDYADNQYSDL 158

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +     +L  K    + + +  L S     +Q+ +   +K  L    +    +      E
Sbjct: 159 LNQY--QLSYKQYKNKRKELEELESADQALLQRLDL--MKFQLEELTEASLKEGEVDQLE 214

Query: 246 EYAKKLFDGRKMDSMS 261
              K++ +  K++   
Sbjct: 215 SDIKRIQNSEKLNLAL 230


>gi|314922022|gb|EFS85853.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
          Length = 868

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L        I  G N +GKT+++EA+  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDCGVVIATGRNEIGKTSMVEALDLLLDTGT-KASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            R   P   S    VE  
Sbjct: 60 KVRTAQPYGTSLQVVVEAE 78


>gi|302387817|ref|YP_003823639.1| hypothetical protein Closa_3490 [Clostridium saccharolyticum WM1]
 gi|302198445|gb|ADL06016.1| conserved hypothetical protein [Clostridium saccharolyticum WM1]
          Length = 687

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 5  IKIKFLNISEFRNYASLR--LVFDAQHTIFVGDNGVGKTNILEAI 47
          +K+  L +  +R++      + FD   T  +G+N  GKT  L A+
Sbjct: 1  MKLAKLKLYNYRSFGESEQIINFDE-LTALIGNNSSGKTAALNAL 44


>gi|295093911|emb|CBK83002.1| hypothetical protein [Coprococcus sp. ART55/1]
          Length = 501

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 55/447 (12%), Positives = 128/447 (28%), Gaps = 104/447 (23%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQ-----------HTIFVGDNGVGKTNILEAISFLSPG- 53
           +++   +  F++     +VF                   G NG GKT+ +EA++ L    
Sbjct: 18  RLQKAVLDNFKSVEHGEIVFACGKKFVPYGTESDILGLYGQNGSGKTSFIEALAILKLLM 77

Query: 54  -RGFRRASYADVTRIGSP----------------------SFFSTFARVEGMEGLADISI 90
                 A YA+    G                         F  +    E   G      
Sbjct: 78  IGAEVPAVYAECVAKGQEMARLEFTFDLQYEDGRIRKVVYEFLMSAVENETNNGFRQYGG 137

Query: 91  KLETRDDRSVRCLQINDVVIRVVDELNK---HLRISWLVPSMDRIFSGLSMERRRFLDRM 147
           + +     S R ++I+   + +  +       L+      + D  F    + ++++    
Sbjct: 138 EDQNSGQPSYR-VRISGEKLSMSGDFEGRKMILQPVIDTCTDDMPF--GPVSKQKYF--- 191

Query: 148 VFAIDPRHRRRMIDFERLMRGRNRL------------------------LTEGYFDSSWC 183
               D +    +    RL + ++                          L   Y+   + 
Sbjct: 192 -ITNDRKFVDELNVVRRLAQEKSASFIFSLGTAKVCDECGLYSEFYQVILELAYYSQLYL 250

Query: 184 SSIEAQM-----AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
             ++ +         G+ +     + +  L + +   + +  F  IK      ++    Q
Sbjct: 251 HVVDTKSTGYIRLNYGLPLYTQSGKFL--LKTDVPNIMPEIVFSEIKSQFEN-INIVLSQ 307

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR---SDLIVDYCDKA-------ITIAHGS 288
               L  +  + L      D      +        +D+ V +  +A       +   + S
Sbjct: 308 IVPGLNVDLHE-LSPALMKDGSMGHVVEIVSSRNETDMSVFHNQEAAPDGRVHMPFRYES 366

Query: 289 TGEQKVV-LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-----G 342
            G +K+V ++ +      +I      +  + +D     LD      L   V         
Sbjct: 367 DGIRKIVSVLSL------IIDAYNEQSCTIAID----ELDAGVFEYLLGEVLQTFQESGK 416

Query: 343 SQIFMTGTDKSVFDSLNETAKFMRISN 369
            Q   T  +    + +++   +   +N
Sbjct: 417 GQFIFTSHNLRPLEVISKDYIYFTTTN 443


>gi|190341651|gb|ACE74902.1| RecN [Cronobacter sakazakii]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|190341607|gb|ACE74880.1| RecN [Cronobacter malonaticus]
 gi|190341609|gb|ACE74881.1| RecN [Cronobacter malonaticus]
 gi|190341613|gb|ACE74883.1| RecN [Cronobacter malonaticus]
 gi|190341615|gb|ACE74884.1| RecN [Cronobacter malonaticus]
 gi|190341617|gb|ACE74885.1| RecN [Cronobacter malonaticus]
 gi|190341619|gb|ACE74886.1| RecN [Cronobacter malonaticus]
 gi|190341623|gb|ACE74888.1| RecN [Cronobacter malonaticus]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|151941253|gb|EDN59631.1| structural maintenance of chromosomes [Saccharomyces cerevisiae
           YJM789]
          Length = 1418

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
           R+ I  L +  F++YA  ++   F    +  VG NG GK+N+++++ F+   R    R+ 
Sbjct: 153 RLFINELVLENFKSYAGKQVVGPFHTSFSAVVGPNGSGKSNVIDSMLFVFGFRANKMRQD 212

Query: 60  SYADVTR 66
             +D+  
Sbjct: 213 RLSDLIH 219


>gi|256053077|ref|XP_002570035.1| chondroitin sulfate proteoglycan [Schistosoma mansoni]
 gi|227287391|emb|CAY17654.1| Structural maintenance of chromosome 3 (Chondroitin sulfate
           proteoglycan 6) (Chromosome-associated polypeptide)
           (hCAP) (Bamacan) (Basement membrane-associated
           chondroitin proteoglycan), putative [Schistosoma
           mansoni]
          Length = 1376

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 4/71 (5%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RR 58
            R+ I  +    F++Y  +R+   F    +  +G NG GK+N+++++ F+   R    R 
Sbjct: 44  PRLMITQIVTENFKSYGGMRVMGPFHKNFSCIIGPNGSGKSNVIDSMLFVFGYRASKVRS 103

Query: 59  ASYADVTRIGS 69
              + +     
Sbjct: 104 KKISQLIHYSE 114


>gi|190341611|gb|ACE74882.1| RecN [Cronobacter malonaticus]
 gi|190341621|gb|ACE74887.1| RecN [Cronobacter malonaticus]
 gi|190341625|gb|ACE74889.1| RecN [Cronobacter malonaticus]
 gi|190341639|gb|ACE74896.1| RecN [Cronobacter sakazakii]
 gi|190341643|gb|ACE74898.1| RecN [Cronobacter sakazakii]
 gi|190341645|gb|ACE74899.1| RecN [Cronobacter sakazakii]
 gi|190341647|gb|ACE74900.1| RecN [Cronobacter sakazakii]
 gi|190341653|gb|ACE74903.1| RecN [Cronobacter sakazakii]
 gi|190341659|gb|ACE74906.1| RecN [Cronobacter sakazakii]
 gi|190341661|gb|ACE74907.1| RecN [Cronobacter sakazakii]
 gi|190341663|gb|ACE74908.1| RecN [Cronobacter sakazakii]
 gi|190341667|gb|ACE74910.1| RecN [Cronobacter sakazakii]
 gi|190341671|gb|ACE74912.1| RecN [Cronobacter sakazakii]
 gi|190341673|gb|ACE74913.1| RecN [Cronobacter sakazakii]
 gi|190341675|gb|ACE74914.1| RecN [Cronobacter sakazakii]
 gi|190341677|gb|ACE74915.1| RecN [Cronobacter sakazakii]
 gi|190341679|gb|ACE74916.1| RecN [Cronobacter sakazakii]
 gi|190341681|gb|ACE74917.1| RecN [Cronobacter sakazakii]
 gi|190341683|gb|ACE74918.1| RecN [Cronobacter sakazakii]
 gi|190341685|gb|ACE74919.1| RecN [Cronobacter sakazakii]
 gi|190341687|gb|ACE74920.1| RecN [Cronobacter sakazakii]
 gi|190341689|gb|ACE74921.1| RecN [Cronobacter sakazakii]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|194754908|ref|XP_001959734.1| GF11892 [Drosophila ananassae]
 gi|190621032|gb|EDV36556.1| GF11892 [Drosophila ananassae]
          Length = 1308

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 7  IKFLNISEFRNYAS-----LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I+ L+I   R++ S       + F +  T+ +G+NG GKT I+E + +   G  
Sbjct: 4  IEKLSIQGVRSFGSNAEDMQSITFSSPVTLILGENGCGKTTIIECLKYALTGES 57


>gi|254234488|ref|ZP_04927811.1| hypothetical protein PACG_00346 [Pseudomonas aeruginosa C3719]
 gi|126166419|gb|EAZ51930.1| hypothetical protein PACG_00346 [Pseudomonas aeruginosa C3719]
          Length = 610

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +++K + +S FR Y +   +  D   T  VG N  GK+ +LEA++  
Sbjct: 1  MRLKTIKLSHFRGYRTTTVIPIDVAMTGIVGRNDYGKSTVLEALAIF 47


>gi|323347562|gb|EGA81830.1| Smc4p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1418

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
           R+ I  L +  F++YA  ++   F    +  VG NG GK+N+++++ F+   R    R+ 
Sbjct: 153 RLFINELVLENFKSYAGKQVVGPFHTSFSAVVGPNGSGKSNVIDSMLFVFGFRANKMRQD 212

Query: 60  SYADVTR 66
             +D+  
Sbjct: 213 RLSDLIH 219


>gi|300930658|ref|ZP_07146045.1| DNA repair protein RecN [Escherichia coli MS 187-1]
 gi|300461478|gb|EFK24971.1| DNA repair protein RecN [Escherichia coli MS 187-1]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLKEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|190406122|gb|EDV09389.1| structural maintenance of chromosome 4 [Saccharomyces cerevisiae
           RM11-1a]
          Length = 1418

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
           R+ I  L +  F++YA  ++   F    +  VG NG GK+N+++++ F+   R    R+ 
Sbjct: 153 RLFINELVLENFKSYAGKQVVGPFHTSFSAVVGPNGSGKSNVIDSMLFVFGFRANKMRQD 212

Query: 60  SYADVTR 66
             +D+  
Sbjct: 213 RLSDLIH 219


>gi|163801686|ref|ZP_02195584.1| hypothetical protein 1103602000597_AND4_09537 [Vibrio sp. AND4]
 gi|159174603|gb|EDP59405.1| hypothetical protein AND4_09537 [Vibrio sp. AND4]
          Length = 660

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          +K+    +  FR+      +     T  +G N  GK+NIL A+  L+P
Sbjct: 1  MKLTKFRVRNFRSINDSGEITTNDLTAILGRNESGKSNILLALQHLNP 48


>gi|120555884|ref|YP_960235.1| hypothetical protein Maqu_2974 [Marinobacter aquaeolei VT8]
 gi|120325733|gb|ABM20048.1| conserved hypothetical protein [Marinobacter aquaeolei VT8]
          Length = 393

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          IK   +S +R+   + +   A   +  G NG GK+N+ +++  L+
Sbjct: 2  IKAFAVSNYRSLRDV-VAPLAGLNVVTGPNGCGKSNLYKSLRLLA 45


>gi|320093497|ref|ZP_08025394.1| DNA repair protein RecN [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319979542|gb|EFW11007.1| DNA repair protein RecN [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 562

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 60/208 (28%), Gaps = 19/208 (9%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
             R+ I  ++I      A     F    T+  G+ G GKT +L ++  L  GR     + 
Sbjct: 4   HGRM-ITSIDIRNLGVIAEAHADFGPGLTVVTGETGAGKTMVLSSLLLLLGGR-----AD 57

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADIS------------IKLETRDDRSVRCLQINDVV 109
           A + R G+          E  EG A+ +            I   T   R     ++    
Sbjct: 58  AALVRQGAARLDVD-GVFEVDEGTAERAEEAGGVVEDGELIVGRTVPARGRSRARLGGRP 116

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
           +           +  +    D+I       +R  LDR   A          +        
Sbjct: 117 VPASAIAGIVGSMVTIHGQSDQIRLTSQNAQREALDRFGAAAHQELVASYREAFHAAVAA 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKI 197
            + L     D          +A    +I
Sbjct: 177 KKRLDAALADRDGREEEIEDLAAATARI 204


>gi|302670351|ref|YP_003830311.1| DNA repair protein RecN [Butyrivibrio proteoclasticus B316]
 gi|302394824|gb|ADL33729.1| DNA repair protein RecN [Butyrivibrio proteoclasticus B316]
          Length = 562

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 10/77 (12%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   + +K L +          + F     I  G+ G GK+ ++ +++    G+     +
Sbjct: 1  MLYSLHVKNLAL-----IKEQEIEFSKGLNILTGETGAGKSVVIGSVNLALGGK-----A 50

Query: 61 YADVTRIGSPSFFSTFA 77
           A + R G         
Sbjct: 51 DAGLIRTGEEYALVELV 67


>gi|270291691|ref|ZP_06197907.1| putative ATP-binding protein [Streptococcus sp. M143]
 gi|270279776|gb|EFA25617.1| putative ATP-binding protein [Streptococcus sp. M143]
          Length = 490

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I+   I+   NY  + L F    TI++G+NG+GKT IL  + +L
Sbjct: 4  IEKFKINNLHNYYDVELNFKNDKTIYIGENGIGKTTILSILYYL 47


>gi|242398779|ref|YP_002994203.1| SMC_N domain containing protein [Thermococcus sibiricus MM 739]
 gi|242265172|gb|ACS89854.1| SMC_N domain containing protein [Thermococcus sibiricus MM 739]
          Length = 43

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 6/40 (15%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGK 40
          M  ++ IK      +++     L F  +  + VG NG GK
Sbjct: 1  MLTKMLIK-----NYKSIKKAELEFS-KINVLVGPNGSGK 34


>gi|152982918|ref|YP_001352697.1| hypothetical protein mma_1007 [Janthinobacterium sp. Marseille]
 gi|151282995|gb|ABR91405.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 936

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 26/161 (16%)

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           +   V ++ AR   I+ L + I  Y +      ++L L   ++   D       ++    
Sbjct: 759 SAAAVAVDNARERYIDVLRATIRRYRKNI----VELGLLAGVEVSADLPHLDNDDDVL-- 812

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ--KVVLVGIFLAHARLIS 308
               R  +        G           D  +     S G+Q  K +++        L+ 
Sbjct: 813 ----RHAELKVSFNFDG---------KGDIGLNDGEASGGQQVIKSLIL-----LVGLLK 854

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
           +       + +DE  AHLD      +   +    +Q  +T 
Sbjct: 855 DEDVPGGFVFIDEPFAHLDVRNIQLVGHFLKSTKAQYVLTT 895



 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-----SPGRGFRR 58
           ++ + + ++     L L  D       G NG GKT +L+A+  L     S GR ++ 
Sbjct: 3  HLQSIELLQWDYCQRLTLPLDGAIITVAGPNGSGKTTLLDAMRTLLGLDCSGGRSYKT 60


>gi|15604056|ref|NP_220571.1| DNA repair protein RECN (recN) [Rickettsia prowazekii str. Madrid
          E]
 gi|11134855|sp|Q9ZDY2|RECN_RICPR RecName: Full=DNA repair protein recN; AltName:
          Full=Recombination protein N
 gi|3860747|emb|CAA14648.1| DNA REPAIR PROTEIN RECN (recN) [Rickettsia prowazekii]
 gi|292571777|gb|ADE29692.1| DNA repair protein RecN [Rickettsia prowazekii Rp22]
          Length = 554

 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
           L++  F     L + F     +  G+ G GK+ +L+AI F    +     +  ++ + G
Sbjct: 4  SLSVKNFILIDELEIEFSKGLCVITGETGAGKSILLDAILFCLGYK-----TSNNIIKHG 58

Query: 69 SP 70
            
Sbjct: 59 KD 60


>gi|327356683|gb|EGE85540.1| DNA repair protein Rad50 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1485

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 6   KIKFLNISEFRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           KI  L+I   R++ +     + F    T+ VG NG GKT I+E + + + G
Sbjct: 187 KIDKLSILGVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 237


>gi|320580809|gb|EFW95031.1| DNA repair protein RAD50 [Pichia angusta DL-1]
          Length = 732

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  L++S  R+++      + F+   T+ VG NG GKT I+EA+ + + G
Sbjct: 4  IYKLSVSGVRSFSGDTHETIQFERPLTLIVGANGSGKTTIIEALRYATTG 53


>gi|312222395|emb|CBY02335.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1502

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 60/191 (31%), Gaps = 22/191 (11%)

Query: 161  DFERLMRGRNRLL-TEGYFDSS------WCSSIEAQMAELGVKINIARVEMINALSSLIM 213
             +E   R R  L       D+S          ++         I     ++  A   +  
Sbjct: 1271 QYENFTRQRRTLTDRRAELDTSRKSIENLIDVLDQ---RKDEAIARTFRQVAQAFHEVFQ 1327

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
            + V       + ++     D +   S     EE  +     +  +     T  G   +  
Sbjct: 1328 QLV-PIGQGRLIINRKSDRDVRGQASDDEDSEEETQAKKGSKVAE----YT--GVSIAVS 1380

Query: 274  IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
                 D+   I   S G++ +  + +  A           AP  L DEI A+LD   R A
Sbjct: 1381 FNSKHDEQQKIGQLSGGQKSLCALALIFA-----IQKCDPAPFYLFDEIDANLDAQYRTA 1435

Query: 334  LFRIVTDIGSQ 344
            + +++  +  Q
Sbjct: 1436 VAQMLKKLSGQ 1446



 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 5   IKIKFLN----ISEFRNYASL-RLV-FDAQHTIFVGDNGVGKTNILEAISF 49
           + +  L     +  F++Y    ++  F  +  + VG NG GK+N   A+ F
Sbjct: 288 LHLSRLQSYPTLRCFKSYKDQMQIEPFSPKCNVIVGRNGSGKSNFFAAVRF 338


>gi|227904502|ref|ZP_04022307.1| DNA repair ATPase [Lactobacillus acidophilus ATCC 4796]
 gi|227867757|gb|EEJ75178.1| DNA repair ATPase [Lactobacillus acidophilus ATCC 4796]
          Length = 832

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 85/230 (36%), Gaps = 32/230 (13%)

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSS-------IEAQMAEL---------GVKINIAR 201
            + + ++++   N L  +    +   ++       ++ Q+AEL            +  A+
Sbjct: 606 DLAELQQIVDQPNELQKQLQIMTEKIAATTYEVNTLQQQVAELQVQLNNLSDSTAVFEAK 665

Query: 202 VEMINA---LSSLIMEYVQKENFPH-IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
            ++ NA    ++   EY+        I  SL    + +F +   A KE Y K L  GR +
Sbjct: 666 QDLANAETNFTNSSKEYLANLLAAKWISRSLDIASNERFPKMLKAAKE-YLKLLTGGRYV 724

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317
           D    + L              K   + + S G  + +   + LA    I +       +
Sbjct: 725 DLELDKKLTVIRND-------GKKREVKYLSRGTAEQLYFALKLAFIEQIKDKINLP--I 775

Query: 318 LLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFM 365
           L+D+   + D+ +   + +++  I   +Q+ +    +S+ + L       
Sbjct: 776 LIDDSFVNFDDRRIGYIDKLLKKISENNQVLIFTAQESLVNKLQIKPLTF 825



 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 86/257 (33%), Gaps = 32/257 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +++K + I  F  ++         +  +F G N  GK+  +  I  +  G   R  S   
Sbjct: 1   MRLKQIKIVNFGQFSDQTFDLPSDKIDVFFGANEAGKSTTVAFIKQILFGFHLRSNSSPF 60

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  + SP   S      G E   +       +  R +  ++ +  V+      +
Sbjct: 61  FEDYTPLAHV-SPMGGSLVFENNGSEYKLERLYAKGDKTKRGILTVKKDGEVVPESIFYD 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR-------- 169
           +   I     +   IF+   + +   L +    ++  +     D  +L+  R        
Sbjct: 120 QIQNIDGPFYADSFIFNQEMLGQVSSLSQEDL-LERIYYLGAADSGKLLELRDDFAKEAS 178

Query: 170 ------------NRLLTEGYFDSSWCSSIEAQMAEL---GVKINIARVEMINALSSLIME 214
                       NRLL +        +  +A+  +      K++  + E+I     L   
Sbjct: 179 KLFKKTGKKPEVNRLLKQVEIQRDNLAQTQAEFTDYETLAQKVSAKKSELIEKQKLLADL 238

Query: 215 YVQKENFPHIKLSLTGF 231
             + +N  H++  ++ +
Sbjct: 239 QKKADNLYHLEKEVSNY 255


>gi|194385300|dbj|BAG65027.1| unnamed protein product [Homo sapiens]
          Length = 729

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 7/130 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  +++  F  Y    +       + VG NG GK++I+ AI     G+         V  
Sbjct: 53  IVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 112

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN      ++V+E    L I  
Sbjct: 113 FVKRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQV 172

Query: 125 -----LVPSM 129
                 +P  
Sbjct: 173 GNLCQFLPQD 182


>gi|171185564|ref|YP_001794483.1| hypothetical protein Tneu_1106 [Thermoproteus neutrophilus
          V24Sta]
 gi|170934776|gb|ACB40037.1| conserved hypothetical protein [Thermoproteus neutrophilus
          V24Sta]
          Length = 372

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          +++    I +F++ A   L      TI +G    GK+NIL+A++ L  
Sbjct: 1  MRV---AIRDFKSVAHAELEIAP-LTILIGPPAGGKSNILDALAVLGY 44


>gi|111017951|ref|YP_700923.1| DNA repair protein RecN [Rhodococcus jostii RHA1]
 gi|110817481|gb|ABG92765.1| DNA repair protein RecN [Rhodococcus jostii RHA1]
          Length = 590

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 60/181 (33%), Gaps = 28/181 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I+I  L +      +     F    T+  G+ G GKT ++ ++  LS  R     +
Sbjct: 1   MLAEIRIDNLGV-----ISEASAQFHEGLTVLTGETGAGKTMVVTSLHLLSGAR-----A 50

Query: 61  YADVTRIGSPSFFST--FARVEGMEGLADI------SIKLETRDDRSVRCLQINDVVIRV 112
            A   R+G+P       F   EG E +         S   E  +D ++  ++      R 
Sbjct: 51  DAGRVRLGAPRAVVEGRFLTDEGSEHVERAVSRLLESTGAERDEDGTIIAVRTVGSDGRS 110

Query: 113 VDELNK--HLRISWLVPSMDRIFSGLSMERRRFL--DRMVFAIDPRHRR-----RMIDFE 163
              L             +   +      ++ R L  D+   A+D R         +  + 
Sbjct: 111 RAHLGGRSVPAGVLSEFTDPLLTVHGQNDQLRLLRPDQQCAALD-RFADKTVGPLLARYR 169

Query: 164 R 164
           +
Sbjct: 170 K 170


>gi|187731758|ref|YP_001881406.1| recombination and repair protein [Shigella boydii CDC 3083-94]
 gi|187428750|gb|ACD08024.1| DNA repair protein RecN [Shigella boydii CDC 3083-94]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLGQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|295103253|emb|CBL00797.1| condensin subunit Smc [Faecalibacterium prausnitzii SL3/3]
          Length = 1185

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 14/126 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           +  K L I  F+++   +++ FD   T  VG NG GK+N+ +A+ ++      R+   A 
Sbjct: 1   MVFKELEIQGFKSFPDKVKISFDTGVTGVVGPNGSGKSNLSDAVRWVLGETSSRQLRAAG 60

Query: 63  ---DVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVI 110
              DV   G+       F      ++      D+    + +  +  RS      IN  V 
Sbjct: 61  KMEDVIFGGTRKRSPMGFAQVRLTLDNAAHTLDVDADEVTIGRKYYRSGDSEYTINGQVC 120

Query: 111 RVVDEL 116
           R+ D  
Sbjct: 121 RLRDVY 126


>gi|261212875|ref|ZP_05927159.1| predicted ATPase possibly involved in inorganic ion transport
           [Vibrio sp. RC341]
 gi|260837940|gb|EEX64617.1| predicted ATPase possibly involved in inorganic ion transport
           [Vibrio sp. RC341]
          Length = 756

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 101/294 (34%), Gaps = 37/294 (12%)

Query: 76  FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSG 135
            A+ EG+    D+      +    V   ++N  +I     L+        +P      S 
Sbjct: 434 IAQFEGVLNELDV-----IKPGLKVGLEKLNQSLINRQAVLSGSA-----LPESLDEISL 483

Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
              +  R +D+ +F       ++  + E + + +   LTE   D ++       +A+   
Sbjct: 484 SHFQALREIDKELFTQIGELEQQSSNNEFVAK-KQARLTELT-DRAY-------VAKHKA 534

Query: 196 KIN--IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
            I   + R +++  L+  I +     +   +   +              LKE + K+L  
Sbjct: 535 NIITNVRRSKIVAKLNK-ISDQCATRSISTLSARIYSQG------VIEPLKESFVKELKS 587

Query: 254 ---GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
               R   ++  R   G  +  L +   ++++     S GEQ+ + +  FL+        
Sbjct: 588 FGFNRFDINVKTRNKAGQQQFKLELANSNESVVGKVASEGEQRCIAIASFLSEM----KA 643

Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGTDKSVFDSLNETA 362
                 +L D+    L       + + +    +  Q+ +   D   +  L E +
Sbjct: 644 DSRRSAVLFDDPVNSLSHQWSAKVAKRLIEESLERQVIVFTHDIVFYKLLLEAS 697


>gi|260438380|ref|ZP_05792196.1| DNA repair protein RecN [Butyrivibrio crossotus DSM 2876]
 gi|292808966|gb|EFF68171.1| DNA repair protein RecN [Butyrivibrio crossotus DSM 2876]
          Length = 560

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 20/121 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L + +      + + F     I  G+ G GK+ IL +I+ L+ G      +
Sbjct: 1   MITNLYVKNLALID-----EIEIEFSNGLNILTGETGAGKSIILGSIN-LALG----NKA 50

Query: 61  YADVT-RIGSPSFFSTFARVEGMEGL---------ADISIKLETRDDRSVRCLQINDVVI 110
            +D+    G          V+  +            +  + +  R       ++IN   +
Sbjct: 51  TSDIIGHYGESGLVEVTFSVDDNKAKELATYDIYPENNELTISRRIMEGRSVIKINGETV 110

Query: 111 R 111
            
Sbjct: 111 S 111


>gi|242398545|ref|YP_002993969.1| hypothetical protein TSIB_0555 [Thermococcus sibiricus MM 739]
 gi|242264938|gb|ACS89620.1| hypothetical protein TSIB_0555 [Thermococcus sibiricus MM 739]
          Length = 803

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 72/197 (36%), Gaps = 24/197 (12%)

Query: 151 IDPRHRRRMIDFERL---MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
           +   H   +  FE     +  + + L +   D +   +   ++ E        R  +   
Sbjct: 577 VRKEHEELLRKFESTKTELEEKTKSLEKNLKDLTEVEAEIKELEE-------KRNNLKAE 629

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGK---FDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
           L     + ++K      ++      DG      Q    +  E A    +   MD      
Sbjct: 630 L-----DKIKKLLNDLERIRRAYHRDGVQRLLRQKIAPIISELATGYIENFNMDI---TD 681

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
           +      D+ V      + I+  S GE+  V + + LA AR +S +     I+++DE + 
Sbjct: 682 IYLSEDFDITVVKNSVEVPISTLSGGEKVAVALALRLAIARALSKSL---SIVIMDEPTT 738

Query: 325 HLDEDKRNALFRIVTDI 341
           HLDE++R  L  I+   
Sbjct: 739 HLDEERRKDLVEILDRF 755


>gi|319427655|gb|ADV55729.1| SMC domain protein [Shewanella putrefaciens 200]
          Length = 872

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 6   KIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           ++K L +  FR +A   L   +++  +  G NG GK++  EA+ +   G
Sbjct: 81  RLKTLTVGPFRGFARQELFDLNSRLVLIYGPNGTGKSSFCEALEYTLLG 129


>gi|116283983|gb|AAH17666.1| SMC5 protein [Homo sapiens]
          Length = 941

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 7/130 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  +++  F  Y    +       + VG NG GK++I+ AI     G+         V  
Sbjct: 53  IVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 112

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV--VIRVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN      ++V+E    L I  
Sbjct: 113 FVKRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKSTTQKIVEEKVAALNIQV 172

Query: 125 -----LVPSM 129
                 +P  
Sbjct: 173 GNLCQFLPQD 182


>gi|116182584|ref|XP_001221141.1| hypothetical protein CHGG_01920 [Chaetomium globosum CBS 148.51]
 gi|88186217|gb|EAQ93685.1| hypothetical protein CHGG_01920 [Chaetomium globosum CBS 148.51]
          Length = 1282

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 101/313 (32%), Gaps = 63/313 (20%)

Query: 6   KIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-------- 54
           +I+ L+I   R++       + F+   T+ VG NG GKT I+E + + + G         
Sbjct: 3   RIEKLSILGVRSFGPQHQETIAFNTPLTLIVGYNGSGKTTIIECLKYATTGELPPNSKGG 62

Query: 55  --------------------GFRRASYADVTRIGSPSFFSTFARV-----EGMEGLADIS 89
                                FR          G     +   ++        +   + S
Sbjct: 63  AFIHDPTLAGEKDVRAQVKVSFRSTV-------GESYVVTRNVQLMVKKSTRSQKTLEGS 115

Query: 90  IKLETRDDR---SVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF--SGLSMERRRFL 144
           + L    +R   S R ++++ +V   +      L         + ++  S  +  ++RF 
Sbjct: 116 LLLRNNGERHVISTRVMELDKLVPEKLGVSPAVLDTVIFCHQDESLWPMSEPAALKKRFD 175

Query: 145 DRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS----------IEAQMAELG 194
           +        ++ + + + + L + +   L E     S   +          +  Q+    
Sbjct: 176 EIFEAM---KYTKVIDNLKILRKKKGEELRELKLQESQDKANKERADKVNKLMGQLTREI 232

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK--EEYAKKLF 252
            +      E+   ++    +   K    +  L +   L  K ++     +  +E   ++ 
Sbjct: 233 EEGRDKYDELTEQMAEEGTKIKSKHEQANSFLRIVNDLQTKTEKLEYKKEAVQELRSRIE 292

Query: 253 DGRKMDSMSRRTL 265
           +    D + +  L
Sbjct: 293 ESADTDQVLKNAL 305


>gi|331087239|ref|ZP_08336309.1| hypothetical protein HMPREF0987_02612 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408925|gb|EGG88386.1| hypothetical protein HMPREF0987_02612 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 527

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 71/202 (35%), Gaps = 18/202 (8%)

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS- 227
           R  LL E   +          + E G ++     E +     ++ E  +        +  
Sbjct: 343 RRELLREEIAEKQMQY---ENLCEQGEELMEVSEEYV-----VLEEKGRAIQLAEDTIRH 394

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           L+  +  +F+     +  E    + DG K D +          +++ +    + I++   
Sbjct: 395 LSTDVRKEFETRLNEVSSEILCAITDG-KYDRI-----FIDENTNIYLLQGAQKISVGQV 448

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G  + +   + +A A L+         ++LDE  A+ DE +     R + +   QI +
Sbjct: 449 SRGTMEQIYFALRMAAAELMYE---EEFPVILDETFAYYDERRLENTLRWLAENKRQIIL 505

Query: 348 TGTDKSVFDSLNETAKFMRISN 369
               +   + L +      ++ 
Sbjct: 506 FTCQRRELEMLRKLGIPYHVNG 527


>gi|325831366|ref|ZP_08164620.1| ABC transporter, ATP-binding protein [Eggerthella sp. HGA1]
 gi|325486620|gb|EGC89068.1| ABC transporter, ATP-binding protein [Eggerthella sp. HGA1]
          Length = 504

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE+K + +   LA             +L LDE + HLD   R  + + +        +
Sbjct: 112 SHGERKRIQIACALAA---------EPQVLALDEPTNHLDAPTRALVAQALASFKGVGLL 162

Query: 348 TGTDKSVFDSLNETAKFMRISNHQALCI 375
              D+++ D L ++  F  +   +AL I
Sbjct: 163 VSHDRALLDELVQSCVF--VEAGRALAI 188


>gi|238883317|gb|EEQ46955.1| hypothetical protein CAWG_05509 [Candida albicans WO-1]
          Length = 1014

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 4/94 (4%)

Query: 17  NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYADVTRIG-SPSF 72
            + S  L    Q    +G NG GK+ IL  IS     +     R ++  D+ + G S S 
Sbjct: 2   CHDSFELKLGPQLNFIIGRNGSGKSAILTGISVGLGAKATDTNRGSTIRDLIKDGKSTSR 61

Query: 73  FSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
            +   + EG +         +   +R ++    N
Sbjct: 62  ITVVLKNEGSDAYKPDVFGKKIIIERKLQRSGSN 95


>gi|256423223|ref|YP_003123876.1| ATP-dependent endonuclease, OLD family [Chitinophaga pinensis DSM
          2588]
 gi|256038131|gb|ACU61675.1| ATP-dependent endonuclease, OLD family [Chitinophaga pinensis DSM
          2588]
          Length = 780

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTN 42
          + +K + I  +R    +++      TIFVG N  GKT+
Sbjct: 1  MYLKTICIKNYRRLKDVKINIQKDTTIFVGANNSGKTS 38


>gi|298529498|ref|ZP_07016901.1| SMC domain protein [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510934|gb|EFI34837.1| SMC domain protein [Desulfonatronospira thiodismutans ASO3-1]
          Length = 519

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++IK L +        + L FD    +  G++G GK+ IL+A+ F+   +      
Sbjct: 1   MLELLRIKNLAL-----IQDMELEFDPGLNVLTGESGAGKSFILKALDFILGEK-----M 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            A + R G          V   E   +  IK E     S     +ND 
Sbjct: 51  SASMVRAGEDKAVVEAVFVLDGE---EYIIKRELAARTSRSRFYLNDS 95


>gi|148683552|gb|EDL15499.1| structural maintenance of chromosomes 4 [Mus musculus]
          Length = 981

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 77  APRLMITHIVNQNFKSYAGEKVLGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 136

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +              VE      
Sbjct: 137 SKKLSVLIHNSDEHKDIQSCTVEVHFQKI 165


>gi|295085189|emb|CBK66712.1| Predicted ATPase [Bacteroides xylanisolvens XB1A]
          Length = 359

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I  + I  +++  +  +       I +G NG+GKTN + A   +
Sbjct: 2  IDAITIEGYKSIKAQEVKLSP-INILIGGNGIGKTNFISAFELI 44


>gi|256394639|ref|YP_003116203.1| ATPase AAA [Catenulispora acidiphila DSM 44928]
 gi|256360865|gb|ACU74362.1| AAA ATPase [Catenulispora acidiphila DSM 44928]
          Length = 464

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 23/78 (29%)

Query: 5  IKIKFLNISEFRNY---ASLRLVFD------AQHTIFVGDNGVGKTNILEAISFLSPG-- 53
          + +K + +   R +     + L         A  T+  G NG GKT +L AI+    G  
Sbjct: 1  MYLKRVTLKNIRGFHGDRRVDLDLTRPDRSYAGWTVLAGRNGSGKTTLLRAIALAIAGPT 60

Query: 54 ------------RGFRRA 59
                         R +
Sbjct: 61 AASRLIPDFEDWVSHRTS 78


>gi|229000747|ref|ZP_04160257.1| AAA ATPase [Bacillus mycoides Rock3-17]
 gi|228759007|gb|EEM08043.1| AAA ATPase [Bacillus mycoides Rock3-17]
          Length = 437

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE--AISFLSPGRGFRRASYA 62
          + I  L +     +    + F  + T+ VGDNG GKT +L+  A++  +   G       
Sbjct: 1  MIIHDLKLENSHGFEERYITFSDKFTVLVGDNGTGKTAVLDGLAVALGAFLSGLDGVHSR 60

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETR 95
             R            +  + GL+DI ++   +
Sbjct: 61 H-IRRDE-----IHREIFKLGGLSDIQMQFPVK 87


>gi|168464610|ref|ZP_02698513.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195632725|gb|EDX51179.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 366

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 45/127 (35%), Gaps = 17/127 (13%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
           + I  +++  F+ +    +  + Q    VG N VGK++I+++I  L P +        D 
Sbjct: 1   MIINRIHLENFKCFIDCDIEIN-QLNFLVGINSVGKSSIIQSI--LLPLQS---VHDTDI 54

Query: 64  -----VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVDEL 116
                +  +G  +       +E  +    I+I+           +    N +    +  L
Sbjct: 55  ELNGPLINLGDHN---DILNIEAADDSIRINIQTNDESCTWGFEKGYVNNGLPKFSLPLL 111

Query: 117 NKHLRIS 123
           +      
Sbjct: 112 HGENSWV 118


>gi|164663071|ref|XP_001732657.1| hypothetical protein MGL_0432 [Malassezia globosa CBS 7966]
 gi|159106560|gb|EDP45443.1| hypothetical protein MGL_0432 [Malassezia globosa CBS 7966]
          Length = 78

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  L I   R++ S     + F    T+ VG NG GKT I+E + +   G
Sbjct: 4  LDKLAIRGMRSFDSHEVNIIQFFKPLTVIVGHNGSGKTTIVECLKYAVAG 53


>gi|50293773|ref|XP_449298.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528611|emb|CAG62272.1| unnamed protein product [Candida glabrata]
          Length = 1398

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
           R+ I  L +++F++YA  ++   F    +  VG NG GK+N+++++ F+   R    R+ 
Sbjct: 127 RLFIHQLVLNDFKSYAGRQVIGPFHTSFSAIVGPNGSGKSNVIDSMLFVFGFRANKMRQD 186

Query: 60  SYADVTR 66
             +D+  
Sbjct: 187 RLSDLIH 193


>gi|328351032|emb|CCA37432.1| DNA repair protein RAD50 [Pichia pastoris CBS 7435]
          Length = 1342

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 1  MTNRIKIKFLNISEFRN---YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +T R  I  L I   R+   +    + F    T+ VG NG GKT I+E + + + G
Sbjct: 43 LTERSSIYKLAIQGVRSFDPHTPETIQFSKPLTLIVGQNGSGKTTIIECLKYATTG 98


>gi|225558965|gb|EEH07248.1| DNA repair protein rad50 [Ajellomyces capsulatus G186AR]
          Length = 1454

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 6   KIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           KI  L+I   R++    S  + F    T+ VG NG GKT I+E + + + G
Sbjct: 156 KIDKLSILGVRSFDNSRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 206



 Score = 36.4 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 29/192 (15%)

Query: 170  NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
            N L            S + Q+ +L    N    +     +    E   K       +   
Sbjct: 1216 NALSARQASKMGEMKSKDDQLMQLLADWNTDYKDA----AVKFKEAHIKVETTKAAVDDL 1271

Query: 230  GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT------ 283
            G      D++         +++   R ++ + ++T  G     +++   ++         
Sbjct: 1272 GRYGSALDKAIMKYHSLKMEEI--NRIIEELWQKTYRGTDVDTILIRSDNENAKGNRSYN 1329

Query: 284  --------------IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
                              S G++ +  + I LA A       G   ++ LDE + +LD D
Sbjct: 1330 YRVCMVKQDAEMDMRGRCSAGQKVLASIIIRLALAECFGVNCG---LIALDEPTTNLDRD 1386

Query: 330  KRNALFRIVTDI 341
               +L   + DI
Sbjct: 1387 NIRSLAESLHDI 1398


>gi|221215097|ref|ZP_03588064.1| SMC domain protein [Burkholderia multivorans CGD1]
 gi|221165033|gb|EED97512.1| SMC domain protein [Burkholderia multivorans CGD1]
          Length = 392

 Score = 44.5 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           +  L I+ +R+   L +   A  T+  G NG GK+++  A+  L+
Sbjct: 3  ALNTLAIANYRSLRELIVPLAA-LTVVTGPNGSGKSSVYRALRLLA 47


>gi|326923963|ref|XP_003208202.1| PREDICTED: structural maintenance of chromosomes protein 3-like
           [Meleagris gallopavo]
          Length = 1227

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 84/271 (30%), Gaps = 43/271 (15%)

Query: 12  ISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADVTRIG 68
           I  FR+Y    +   F ++H + VG NG GK+N   AI   LS      R          
Sbjct: 32  IQGFRSYRDQTIVDPFSSKHNVIVGRNGSGKSNFFYAIQFVLSDEFSHLRP--------- 82

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV-- 126
                   A +    G   IS  +E   D S   L I+   + +   +       +L   
Sbjct: 83  ----EQRLALLHEGTGPRVISAFVEIIFDNSDNRLPIDKEEVSLRRVIGAKKDQYFLDKK 138

Query: 127 ----PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM----RGRNRLLTEGYF 178
                 +  +       R           +P +  +     ++       R +LL E   
Sbjct: 139 MVTKNDVMNLLESAGFSR----------SNPYYIVKQGKINQMATAPDSQRLKLLREVAG 188

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
              +    + +   L  +    R + IN L   I E +        +L+     D     
Sbjct: 189 TRVY-DERKEESISLMKETEGKREK-INELLKYIEERLHTLEEEKEELAQYQKWDKMRRA 246

Query: 239 SFCALKEEYAKKLFDGRKM--DSMSRRTLIG 267
               +   Y ++L + R    +  ++R   G
Sbjct: 247 LEYTI---YNQELNETRAKLDELSAKRETSG 274



 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 19/287 (6%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
              E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 918  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 975

Query: 138  MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
              +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 976  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 1035

Query: 198  NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
              A       +S    E  QK        L +  G ++G   Q       E  +      
Sbjct: 1036 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSAESERGSGSQS 1095

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
             + S+ + T +G     + V +  K      +   S G++ +V + +  A          
Sbjct: 1096 SVPSVDQFTGVG-----IRVSFTGKQGEMREMQQLSGGQKSLVALALIFA-----IQKCD 1145

Query: 313  FAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
             AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 1146 PAPFYLFDEIDQALDAQHRKAVSDMIMELAEHAQFITTTFRPELLES 1192


>gi|320583658|gb|EFW97871.1| Protein involved in recombination repair [Pichia angusta DL-1]
          Length = 756

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 17  NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYADVTRIGSP-SF 72
            +A+ +L F  Q    +G NG GK+ IL  IS     +     R  S   +   G   + 
Sbjct: 2   CHAAFKLDFGEQTNFIIGRNGSGKSAILTGISVALGAKASDTDRGNSLKGLIMHGKNVAR 61

Query: 73  FSTFARVEGMEGLADISIKLETRDDRSVRC 102
                + EG E             +R ++ 
Sbjct: 62  AIVTFKNEGPEAYRPHEYGKIITIERVLKV 91


>gi|319793882|ref|YP_004155522.1| chromosome segregation protein smc [Variovorax paradoxus EPS]
 gi|315596345|gb|ADU37411.1| chromosome segregation protein SMC [Variovorax paradoxus EPS]
          Length = 1171

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 90/286 (31%), Gaps = 31/286 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + +S F+++A     +   Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1   MRLNSIKLSGFKSFAEPTNFLLPGQLVGVVGPNGCGKSNIMDAVRWVLGESRASELRGES 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLAD------ISIKLETRDDR-SVRCLQINDV 108
             DV   G       S  S     +  +  A         I +     R       IN+ 
Sbjct: 61  MQDVIFNGTTTRKQASRSSVELVFDNADHRAGGQWNQFGEIAVRRVLTRDGTSSYYINNQ 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D         L           ++ RI      E R FL+        +++ R  
Sbjct: 121 PVRRRDVQDVFLGTGLGPRAYAIIGQGTISRIIESKPEELRLFLEEAAG--VSKYKERRR 178

Query: 161 DF-ERLMRGRNRLLTEGYFDSSW---CSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
           +   RL   R  L                +E Q AE+  + N  + E       L     
Sbjct: 179 ETENRLGDTRENLTRVEDILRELNANLEKLEKQ-AEVAARYNTLQGEATKKQHQLWFLKR 237

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            + +    K+           +S  A       +L   R+    + 
Sbjct: 238 SESDADQAKIKSDSERAINDLESRTADLRHIEAELETVRQAHYAAG 283



 Score = 36.0 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 79/247 (31%), Gaps = 37/247 (14%)

Query: 128  SMDRIFSGLSMERRRFLDRMV---------FAIDPRHRRR-MIDFERLMRGRNRLLTEGY 177
                +    S ERR  L+R +         F +  +  R  +  +++L+      L    
Sbjct: 881  DDLTLKLRASDERRLQLERELDPLRQRITEFQLKEQAARLGVEQYQQLLEDAGADLEAIA 940

Query: 178  FD-----------SSWCSSIEAQMAELGV---------KINIARVEMINALSSLIMEYVQ 217
                          S    +  ++  LG           I   R   ++A S+ + E + 
Sbjct: 941  QSIETDKVRLTGLQSEIDRLNREVVALGAVNLAALDELAIASERKTFLDAQSADLNEAIG 1000

Query: 218  --KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
              ++    I       L G F          + +    G     M+   ++      L  
Sbjct: 1001 TLEDAIRKIDAETRDLLGGTFKIVNEHFSRMFPELFGGGNARLVMTGDEILDAGVQVLAQ 1060

Query: 276  DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
                K  TI   S GE+ +  + +  A  +L       AP  LLDE+ A LD+       
Sbjct: 1061 PPGKKNQTIHLLSGGEKALTAIALVFAIFQL-----NPAPFCLLDEVDAPLDDANTERYA 1115

Query: 336  RIVTDIG 342
            ++VT + 
Sbjct: 1116 KLVTAMS 1122


>gi|295980932|emb|CBJ57180.1| putative DNA helicase associated protein [Streptococcus
          pneumoniae]
          Length = 689

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  + I+ FR++  S  +  + Q  + +G+N  GKT +L+A+S L
Sbjct: 1  MKLTKVIINNFRSFGESQIIELNNQP-VLIGNNSSGKTTVLQALSKL 46


>gi|301119841|ref|XP_002907648.1| structural maintenance of chromosomes protein 5, putative
           [Phytophthora infestans T30-4]
 gi|262106160|gb|EEY64212.1| structural maintenance of chromosomes protein 5, putative
           [Phytophthora infestans T30-4]
          Length = 1088

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 19/102 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y+        +  + +G NG GK++I+ A+     G             
Sbjct: 20  IYRVKLHNFLTYSDAEFYPGPRLNLILGPNGTGKSSIVCALCVGLAGS------------ 67

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                  + F R E   G  +I +  E  +    R +  ++ 
Sbjct: 68  -------TKFVRHEKESGYTEIELFFERGNKVIRRNIFRDNK 102


>gi|242242788|ref|ZP_04797233.1| DNA repair protein RecN [Staphylococcus epidermidis W23144]
 gi|242233924|gb|EES36236.1| DNA repair protein RecN [Staphylococcus epidermidis W23144]
          Length = 558

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 84/256 (32%), Gaps = 28/256 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2   LQTLSIKQFAIIDELDINFSDGLTVMSGETGSGKSIIIDAIGQLI---GMRASSD--YVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G           +  E    I I      D     L +   +      + +      + 
Sbjct: 57  HGEKKAI-IEGIFDIDESKDAIKILESLAIDVDEDFLLVKREIFSSGKSICRINN-QTVT 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL-LTEGYFDSSWCSS 185
               R         +  LD               + + L++ +  L L + Y D+ +   
Sbjct: 115 LQDLR------KVMQELLDIHGQH----------ETQSLLKQKYHLQLLDDYADNQYSDL 158

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
           +     +L  K    + + +  L S     +Q+ +   +K  L    +    +      E
Sbjct: 159 LNQY--QLSYKQYKNKRKELEELESADQALLQRLDL--MKFQLEELTEASLKEGEVDQLE 214

Query: 246 EYAKKLFDGRKMDSMS 261
              K++ +  K++   
Sbjct: 215 SDIKRIQNSEKLNLAL 230


>gi|239611181|gb|EEQ88168.1| DNA repair protein Rad50 [Ajellomyces dermatitidis ER-3]
          Length = 1470

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 6   KIKFLNISEFRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           KI  L+I   R++ +     + F    T+ VG NG GKT I+E + + + G
Sbjct: 172 KIDKLSILGVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 222


>gi|225452807|ref|XP_002278154.1| PREDICTED: similar to ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL
           MAINTENANCE OF CHROMOSOME 3); ATP binding [Vitis
           vinifera]
          Length = 1568

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 2   TNRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFR 57
             R+ IK + +  F++Y        F    +  VG NG GK+N+++A+ F+     +  R
Sbjct: 311 APRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMR 370

Query: 58  RASYADVTR 66
               +++  
Sbjct: 371 LNKVSELIH 379


>gi|116249575|ref|YP_765413.1| hypothetical protein pRL90121 [Rhizobium leguminosarum bv. viciae
          3841]
 gi|115254223|emb|CAK03838.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
          viciae 3841]
          Length = 388

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          + ++ +    +R+  S+R+   A   +F+G+NGVGK+N+
Sbjct: 11 MLLRSMFAQNYRSLRSIRMDL-AGVNVFIGENGVGKSNL 48


>gi|51244254|ref|YP_064138.1| hypothetical protein DP0402 [Desulfotalea psychrophila LSv54]
 gi|50875291|emb|CAG35131.1| hypothetical ATP-binding protein [Desulfotalea psychrophila LSv54]
          Length = 427

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 55/381 (14%), Positives = 123/381 (32%), Gaps = 65/381 (17%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAISF-LSPGRGFR 57
           ++++   +     +  L ++           T+F+G+NG GKT++L++++  LS     R
Sbjct: 1   MEVQRFQLHNIGCFEQLEILLAPTKENNSNITVFIGNNGAGKTSLLKSLATSLSWLVS-R 59

Query: 58  RASYA-------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
             S A       ++    S +  S    ++  +     S   +     +           
Sbjct: 60  IRSEAGSGSPIPELVIQNSKN--SAAIDIQVSDKNITTSSAKDLSAPSTFEWRIAKSRKG 117

Query: 111 RVVDELNKHLRISWLVPSM-DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
           R  +  +   + S L  +  DR+    + E+        ++++       +     ++G+
Sbjct: 118 RKGEHKSLLQQASLLANAYRDRL---SADEQTALPLMAFYSVERVVIEIPLR----IKGK 170

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
           +  L    +D+S    ++                          +    EN   I   + 
Sbjct: 171 HSFLQLDGYDNSLQQGVD-----------------FKRFFEWFRKREDTENESIIPPEIL 213

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH-------------RSDLIVD 276
             L  +  +   +L++E  K     R     + RT I                R  + +D
Sbjct: 214 KQL-QELTEENSSLQQELQKLNASNRDRQLTAVRTAISSFMPGFTNLRVRRKPRLHMAID 272

Query: 277 YCDKAITIAHGSTGEQKVVL-----VGIFLAHARLISNTTGF-APILLLDEISAHLDEDK 330
                  +A  S GE K ++     +   LA              I+L+DE+  HL    
Sbjct: 273 KDGDTFDVAQLSQGE-KSLMTLVGDIARRLAMMNPGRQNPLEGEGIILIDEVDMHLHPRW 331

Query: 331 RNALFRIVTDIG--SQIFMTG 349
           +  +   ++      Q  ++ 
Sbjct: 332 QRTVLANLSKTFPHCQFVVST 352


>gi|332236692|ref|XP_003267534.1| PREDICTED: structural maintenance of chromosomes protein 5
           [Nomascus leucogenys]
          Length = 1177

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
           I  +++  F  Y    +       + VG NG GK++I+ AI     G+
Sbjct: 169 IVRISMENFLTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGK 216


>gi|296189777|ref|XP_002806532.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of
           chromosomes protein 5-like [Callithrix jacchus]
          Length = 1203

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 33/103 (32%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  +++  F  Y    +       + +G NG GK++I+ AI     G+         V  
Sbjct: 153 IVRISMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 212

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
                       +E      ++ I  E    ++     IN   
Sbjct: 213 FVKRGCSKGMVEIELFRASGNLVITREIDVAKNQSFWFINKKP 255


>gi|284054130|ref|ZP_06384340.1| SMC domain protein [Arthrospira platensis str. Paraca]
 gi|291569444|dbj|BAI91716.1| putative ABC transporter ATP-binding protein [Arthrospira platensis
           NIES-39]
          Length = 381

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 58/384 (15%), Positives = 127/384 (33%), Gaps = 61/384 (15%)

Query: 7   IKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           I  L +    +Y   +  +  +    + +G N  GK+N++EA+  L       +++  D+
Sbjct: 5   IHSLKLRNLLSYGSETEPIKLEP-LNVLIGRNASGKSNLIEALGIL-------KSTPTDL 56

Query: 65  ---TRIG---SPSFFST-----FARVEGMEGLADISIKLETRDD--RSVRCLQINDVVIR 111
               R G   S   +        A ++      + S+ L  R     + + L+I D  I 
Sbjct: 57  TAPIRQGGGISDFLWKGAQNIPIAEIDATIAPLEGSMNLRYRISFTEAGQRLEILDEAIE 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
                          P     + G         +   +      R  +   + ++  R  
Sbjct: 117 NEHPYPGENE-----PYFFYRYQGGRPVINEATEVDGYKKRALRRETLSPEQSVLSQR-- 169

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH----IKLS 227
                  D      + + +A    +IN+ R   I   S       Q+ + P       +S
Sbjct: 170 ------KDPDMYPQL-SYLASQFAQINLYRNWQIGRYSEP--RLAQQTDLPSHPILEDIS 220

Query: 228 LTGFL--DGKFDQSFCALKEEYAKKLFDGRKMDS-MSRRTLIGPHRSDLIVDYCDKAITI 284
             G +  + ++      + E   K   +  ++   +   T+    R   ++    + I  
Sbjct: 221 NLGLVLNNLQYQLGSREIIENLQKFYEEAEELIIKIYGGTVQIFIREKDLI----QPIPA 276

Query: 285 AHGSTGEQK-VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDI 341
              S G  + + L+ +      L+  T G  PIL ++E    L  D    +  ++     
Sbjct: 277 TRLSDGTLRYLFLMAL------LLDPTPG--PILCIEEPEIGLHPDILPMIAEMLISASE 328

Query: 342 GSQIFMTGTDKSVFDSLNETAKFM 365
            +Q+ +T    ++  +L   +  +
Sbjct: 329 RTQLIVTTHSDALISALPPESVLV 352


>gi|158522642|ref|YP_001530512.1| ABC transporter-related protein [Desulfococcus oleovorans Hxd3]
 gi|158511468|gb|ABW68435.1| ABC transporter-related protein [Desulfococcus oleovorans Hxd3]
          Length = 357

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 23/184 (12%)

Query: 1   MTNRIKIKFLNIS--EFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL---SPGR 54
           M  R+ +  L+I    FR    +    +     + +G  G GKT  LEA++ L   + G 
Sbjct: 6   MKGRVAVCDLSIRLPGFR-LEHISFSIEPGEFFLLLGPTGAGKTLTLEALAGLVPINTGT 64

Query: 55  GFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                   +VTR+  P   S     +       +S+          R  ++  +  + ++
Sbjct: 65  LHVNG--QNVTRLP-PEARSVGIVYQDYALFPHLSVMENICYGVRYRKPEV-RMPRKQIN 120

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMER----RR--------FLDRMVFAIDPRHRRRMIDF 162
           EL   + I+ L        SG   +R    R          LD  + A+DP  R  +   
Sbjct: 121 ELMSQVGIAHLANRSIVTLSGGEKQRVALLRALAVNPSVLLLDEPLSALDPGFREDLQQL 180

Query: 163 ERLM 166
            + +
Sbjct: 181 LKAL 184


>gi|157962128|ref|YP_001502162.1| SMC domain-containing protein [Shewanella pealeana ATCC 700345]
 gi|157847128|gb|ABV87627.1| SMC domain protein [Shewanella pealeana ATCC 700345]
          Length = 676

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 22/127 (17%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHT-----------IFVGDNGVGKTNILEAISF--- 49
           + IK L I+ FR +  +  +  + + T           +F G NG GKT+IL A+     
Sbjct: 1   MIIKSLVINNFRVFRGVHEIDLEPRVTRKHQTAASPIVLFGGLNGAGKTSILSAVRVALY 60

Query: 50  --LSPGRGFRRASYAD----VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
              + GRG   A Y +    +   G     +  A ++ +   +   ++ E R  R  +  
Sbjct: 61  GRAAFGRGMNSAQYQEQLDALIHNGV-GISADKASIQLIFTHSQNGVESEYRVTRGWKRG 119

Query: 104 QINDVVI 110
           Q + +V+
Sbjct: 120 QKDKLVL 126


>gi|33151972|ref|NP_873325.1| DNA repair protein [Haemophilus ducreyi 35000HP]
 gi|33148194|gb|AAP95714.1| DNA repair protein [Haemophilus ducreyi 35000HP]
          Length = 559

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 22/131 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F     L L  +   ++  G+ G GK+  ++A+S     R       + + R
Sbjct: 2   LNQLTINNFAIVHHLTLDLNEGMSVITGETGAGKSIAIDALSLCLGYRS-----ESSMIR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQIND-VV 109
            G+                         +   +   +  ++     +   +    N  + 
Sbjct: 57  NGANKADIIATFSMQPASPAYLWLKQHELLDEDNPQECILRRMINQEGRSKAFVNNRPLP 116

Query: 110 IRVVDELNKHL 120
           I  + EL ++L
Sbjct: 117 ISQLRELGQYL 127


>gi|1033112|gb|AAA79786.1| CG Site No. 10872; alternate name radB; a frame- shift error in
           GenBank Accession Number Y00357 changes the C-terminal
           end of the gene [Escherichia coli str. K-12 substr.
           MG1655]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 30/224 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
            G+               +    +E  +        L        R    IN   V +  
Sbjct: 57  TGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           + EL         +H       P   +            L  M   + +  +  R +   
Sbjct: 117 LRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMTARYQLWHQSCRDLAHH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
           ++L + R        +     +    Q  E   +I+     + N
Sbjct: 177 QQLSQERAARAELLQYQLKELNEFNPQPGEF-EQIDEEYKRLAN 219


>gi|330949906|gb|EGH50166.1| AAA ATPase [Pseudomonas syringae Cit 7]
          Length = 793

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 14/64 (21%)

Query: 7   IKFLNISEFRNYASLRLVFDAQH-------------TIFVGDNGVGKTNILEAISF-LSP 52
           +  L I  F++   L +    Q               + +G+N  GK+ ILEA++  LS 
Sbjct: 345 VTSLRIENFKSIEHLDINLRPQTPTTPAEGTRQVPALLIIGENSAGKSTILEALALGLSS 404

Query: 53  GRGF 56
            + F
Sbjct: 405 TQAF 408


>gi|258577137|ref|XP_002542750.1| structural maintenance of chromosome 2 [Uncinocarpus reesii 1704]
 gi|237903016|gb|EEP77417.1| structural maintenance of chromosome 2 [Uncinocarpus reesii 1704]
          Length = 1179

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRIVEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKTKSPIGFEEYASISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|239815928|ref|YP_002944838.1| chromosome segregation protein SMC [Variovorax paradoxus S110]
 gi|239802505|gb|ACS19572.1| chromosome segregation protein SMC [Variovorax paradoxus S110]
          Length = 1171

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 90/286 (31%), Gaps = 31/286 (10%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + +S F+++A     +   Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1   MRLNSIKLSGFKSFAEPTNFLLPGQLVGVVGPNGCGKSNIMDAVRWVLGESRASELRGES 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLAD------ISIKLETRDDR-SVRCLQINDV 108
             DV   G       S  S     +  +  A         I +     R       IN+ 
Sbjct: 61  MQDVIFNGTTTRKQASRSSVELVFDNADHRAGGQWNQFGEIAVRRVLTRDGTSSYYINNQ 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D         L           ++ RI      E R FL+        +++ R  
Sbjct: 121 PVRRRDVQDVFLGTGLGPRAYAIIGQGTISRIIESKPEELRLFLEEAAG--VSKYKERRR 178

Query: 161 DF-ERLMRGRNRLLTEGYFDSSW---CSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
           +   RL   R  L                +E Q AE+  + N  + E       L     
Sbjct: 179 ETENRLGDTRENLTRVEDILRELNANLEKLEKQ-AEVAARYNALQGEATKKQHQLWFLKR 237

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            + +    K+           +S  A       +L   R+    + 
Sbjct: 238 SESDADQAKIKADSEKAINDLESRTADLRRIESELETVRQAHYAAG 283


>gi|153872402|ref|ZP_02001306.1| ATPase involved in DNA repair [Beggiatoa sp. PS]
 gi|152071131|gb|EDN68693.1| ATPase involved in DNA repair [Beggiatoa sp. PS]
          Length = 679

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ------HTIFVGDNGVGKTNILEAISFLSPG 53
          + I  + + +F++Y +    F A         +  G NG GKT +L+AI     G
Sbjct: 1  MWISKIELRKFKSYDNQVFKFPAPSEDGRHIILIGGMNGYGKTTLLQAIYLGLYG 55


>gi|148239736|ref|YP_001225123.1| putative ATPase involved in DNA repair [Synechococcus sp. WH
          7803]
 gi|147848275|emb|CAK23826.1| Putative ATPase involved in DNA repair [Synechococcus sp. WH
          7803]
          Length = 894

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +++    +   R +  L + F    T+  G N  GK++++EA+ 
Sbjct: 1  MRLIRCRLESVRRHRELEVAFAPGLTLIGGGNETGKSSLVEAMH 44


>gi|123456478|ref|XP_001315974.1| ABC transporter family protein [Trichomonas vaginalis G3]
 gi|121898667|gb|EAY03751.1| ABC transporter family protein [Trichomonas vaginalis G3]
          Length = 774

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E+ +     R +D  + +  I     +L +            S G+++ + + + L    
Sbjct: 613 EHLEIFGRIRGIDEFTLQNSIDFFADNLQLR-EMLPNRAGDLSGGQKRKLCIALSL---- 667

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSLNETAKF 364
                 G  PI+++DE +A +D   R  +++ ++ +  S   +T    ++ ++   +++ 
Sbjct: 668 -----LGNPPIIMMDEPTAGVDVQARQLIWKTISTLKESTCIITT--HALEEAEAVSSRM 720

Query: 365 MRISNHQA 372
             IS  + 
Sbjct: 721 FVISGGKI 728


>gi|88808771|ref|ZP_01124281.1| RecF protein:ABC transporter [Synechococcus sp. WH 7805]
 gi|88787759|gb|EAR18916.1| RecF protein:ABC transporter [Synechococcus sp. WH 7805]
          Length = 890

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +++    +   R +  L + F    T+  G N  GK++++EA+ 
Sbjct: 1  MRLIRCRLESVRRHRELEVAFAPGLTLIGGGNETGKSSLVEAMH 44


>gi|189499564|ref|YP_001959034.1| DNA repair protein RecN [Chlorobium phaeobacteroides BS1]
 gi|189495005|gb|ACE03553.1| DNA repair protein RecN [Chlorobium phaeobacteroides BS1]
          Length = 569

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 49/281 (17%), Positives = 93/281 (33%), Gaps = 29/281 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRASYA 62
           +  L I  F     L + F    TI  G+ G GK+ ++ A++ +   R      R  S  
Sbjct: 2   LTNLYIKNFALIEELSVAFSKGLTIITGETGAGKSILIGALNQILGIRANTDLVRSGSDK 61

Query: 63  DVTRI----GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--IRVVDEL 116
            V         P   +      G++   +I ++ E       RC  IND    ++V+ +L
Sbjct: 62  AVIEAILTPEKPERLTPILEEAGIDPGEEIILRREISAKGQSRCF-INDTPGTLQVLKKL 120

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              L           +           LD     ++P       +  + ++ + + L   
Sbjct: 121 GDQLVDLHGQHEHQLLLH--PETHLSLLD-EFGQLNPL-VESYQNVFKNLKKKRKELERV 176

Query: 177 YFDSSWC----SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             ++         +E Q  EL +      +E+ +   + I E +        + SL   L
Sbjct: 177 TTEADRLKEKQDLLEYQYKELDL------LELKSGEQADIEEEIILHENAETRFSLCSSL 230

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT-LIGPHRSD 272
               +Q +      +       R++D +S       PH  D
Sbjct: 231 S---EQLYDDDLSAFVLLSEAVRQLDRLSGIDKSFSPHLQD 268


>gi|332668242|ref|YP_004451030.1| SMC domain-containing protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332337056|gb|AEE54157.1| SMC domain protein [Haliscomenobacter hydrossis DSM 1100]
          Length = 1215

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 86/293 (29%), Gaps = 38/293 (12%)

Query: 5   IKIKFLNISEFRNYA-SLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           +KI+ L I    +      + F       +      GD G GK+ IL+AI+    G   R
Sbjct: 1   MKIRKLTIKNLHSLRLDAEIDFVSAPLGTSGLFAITGDTGAGKSTILDAITLALYGELPR 60

Query: 58  RASYADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRD----DRSVR 101
            ++Y ++   G+ +                   V    G  D  I+   R+    D + +
Sbjct: 61  ESAYEEIISYGAATSLAELEFEHNGLLLRAKWSVHRAGGKPDGKIQAPKRELAQWDEARQ 120

Query: 102 CLQINDVVIRVVD---------ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152
              I     + +D         +  +  R   L       F       R  L   +   +
Sbjct: 121 EFVIIAEKAKELDQQVEKLTGLDYERFRRSVLLAQGDFAAFLHAKEGERSELLEKITGSE 180

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI----EAQMAELGVKINIARVEMINAL 208
             +           +  +  L E   + S    +      Q+A+   ++     + +   
Sbjct: 181 -IYTELSKAAFAKHKQEDLRLKELQAEKSRLEILPVEEAEQLAQQVQELEQE-SQSLQQR 238

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
              + + +QK        +    LDG+  Q   A        +   R  D   
Sbjct: 239 IGDLRQLLQKLERKQELEADISRLDGEQLQWELAKANALPNFVRLNRFQDLRL 291


>gi|328541940|ref|YP_004302049.1| SMC domain protein [polymorphum gilvum SL003B-26A1]
 gi|326411690|gb|ADZ68753.1| SMC domain protein [Polymorphum gilvum SL003B-26A1]
          Length = 817

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 76/237 (32%), Gaps = 37/237 (15%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG----------RG 55
           K++  ++ EFR    L + F        G NG GK+ +++AI F   G          + 
Sbjct: 3   KLETAHVEEFRGIRKLDIDFGKGTFAISGPNGTGKSGVIDAIEFGLTGEIGRLTGRGTKS 62

Query: 56  FRRASYA---DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
              + +    D  +    +F      +  +   A I+ K+       +     +  V   
Sbjct: 63  LSVSEHGPHVDKVKFPDAAFVELKVFLPALGKSATITRKVSAPGKPKIEPA--DADVKAA 120

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + E+  H  I+     + R       +R   +  ++          +      +      
Sbjct: 121 LAEIADHPEITLARRDILRFILVEPTKRSEEIQAILK------LDGIGQTRAALNTAQNK 174

Query: 173 LTEGYFDS-----SWCSSIEAQM-------AELGVKINIARVEM----INALSSLIM 213
           L  G+  +     S   +++  +       AEL   +N  R  +    I AL+    
Sbjct: 175 LQSGFKSATGQVQSSRDTLQRHLQIAVFGAAELLAAVNPKREALGLPKIEALTPDTQ 231


>gi|241664066|ref|YP_002982426.1| DNA repair protein RecN [Ralstonia pickettii 12D]
 gi|240866093|gb|ACS63754.1| DNA repair protein RecN [Ralstonia pickettii 12D]
          Length = 568

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 16/115 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F    +L L      T+F G+ G GK+ +++A   L+   G R  + A V R
Sbjct: 2   LRSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDA---LALTLGER--ADAAVVR 56

Query: 67  IGSPSFFS---------TFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVI 110
            G+P               A +E  E   D  + L  R  D        IN   +
Sbjct: 57  EGAPRADITAEFDVHPHVAAWLEAHELHDDEGVILLRRTVDAAGRSKAFINGAAV 111


>gi|39971565|ref|XP_367173.1| hypothetical protein MGG_07098 [Magnaporthe oryzae 70-15]
 gi|145019566|gb|EDK03794.1| hypothetical protein MGG_07098 [Magnaporthe oryzae 70-15]
          Length = 1179

 Score = 44.5 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          +++  + I  F++YA   +   +D       G NG GK+NIL+AI F
Sbjct: 1  MRVTEIIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICF 47


>gi|331685338|ref|ZP_08385924.1| DNA sulfur modification protein DndD [Escherichia coli H299]
 gi|323939573|gb|EGB35779.1| DNA sulfur modification protein DndD [Escherichia coli E482]
 gi|331077709|gb|EGI48921.1| DNA sulfur modification protein DndD [Escherichia coli H299]
          Length = 666

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 92/300 (30%), Gaps = 40/300 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPG 53
           + IK L +  FR +  +  +    +            +F G NG GKT+IL AI     G
Sbjct: 1   MLIKQLVLHNFRVFNGTHTIDLAPRKRPHEVSPRPIVLFGGLNGAGKTSILSAIRLALYG 60

Query: 54  RGFRRASYAD---------VTRIG-------SPSFFSTFARVEGMEGLADISIKLETRDD 97
           R     +            +   G         +              ++ ++    +  
Sbjct: 61  RLAFGLATQQQDYIEHLSSLIHKGAYYIEQPEEAAVELTFTYNKGGQESEFTVTRTWKKG 120

Query: 98  RSVRCLQINDVVIRVVDELNKHLRISWLVPSMD-----RIFSGLSMERRRFLDRMVFAID 152
           +  R         + + EL  + +    +  +       +F     +     +     I 
Sbjct: 121 KKDRLSL--QKDGQPLSEL-GYDQCQGFLNELIPHGIADLFFFDGEKIAELAEDESGNIL 177

Query: 153 PRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
               RR++  E + + RN L+       SS  +  + Q  E+    +        AL   
Sbjct: 178 RTAVRRLLGLELISKLRNDLMIFVKRQQSSQLAETQQQQIEVLENKSRDLACQTEALLEK 237

Query: 212 IMEYVQKENFPHIK-LSLTGFL---DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
                 + +F     +   G L    G F Q+    K++    L D  +++   R+   G
Sbjct: 238 ADFAKSRIDFLSKDIIRYEGLLNAQGGAFAQTKAQEKQKVETLLKDKERLEKALRQECDG 297



 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 74/232 (31%), Gaps = 31/232 (13%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           +     +R ++ + E+ +      +     D       E ++ +L  +    R + ++ L
Sbjct: 397 WQRFDLYRIQLAEIEQQLEQAAANIARAPEDEQLMDLFE-KLRDLDKQREDQRQKYLSLL 455

Query: 209 -------SSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCALKEEYAKKLFDGR----- 255
                     +    Q +       +   F    K  Q    L + Y+  L   R     
Sbjct: 456 GDAKRVKQQQLDCVRQVQKLHDAARTQHSFSSAFKNAQETINLLDRYSDVLTQARVKTLS 515

Query: 256 -----------KMDSMSRRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                      + + M     I P   D+ +    KA+      S GE+++  + I    
Sbjct: 516 ANFEVAYRKLARKEDMQLSAHINPETFDVELIDEKKAVINRKLLSAGEKQIYAIAI---- 571

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
              ++ T+G    +++D     LD   R+ L          Q+ +  TD  V
Sbjct: 572 LEALAKTSGRDLPVIIDTPLGRLDSQHRDKLINHYFPFASHQVVLLSTDTEV 623


>gi|301062560|ref|ZP_07203198.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300443325|gb|EFK07452.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 418

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 12/142 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--------FRR 58
           I+ +    +R    ++   +    + VG N  GKT  L+ ISFL              R 
Sbjct: 2   IRMVEALNYRCLRYIKQDLND-FHVLVGPNASGKTTFLDVISFLGDLLSESLDSAILERT 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN--DVVIRVVDEL 116
           +++ D+        F     +E     A + +  E + D     + I      I + DE 
Sbjct: 61  SNFVDLLFARRGHHFELAIEMEIPSERARM-LPQERKFDAIRYEISIGMEKNEIHIFDEK 119

Query: 117 NKHLRISWLVPSMDRIFSGLSM 138
              L+     P    +F     
Sbjct: 120 VILLQKEPDPPKQRELFPNPPD 141


>gi|297265476|ref|XP_002799197.1| PREDICTED: structural maintenance of chromosomes protein 6-like
           [Macaca mulatta]
          Length = 977

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 18/100 (18%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ +++  F  ++ L    F +     VG+NG GK+ +L A+     GR     R +S  
Sbjct: 49  IESIHLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNRGSSLK 108

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
              + G  S              ADISI L  R D + + 
Sbjct: 109 GFVKDGQNS--------------ADISITLRNRGDDAFKA 134


>gi|190341665|gb|ACE74909.1| RecN [Cronobacter sakazakii]
 gi|190341669|gb|ACE74911.1| RecN [Cronobacter sakazakii]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 45/268 (16%), Positives = 94/268 (35%), Gaps = 38/268 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKE----EYAKKLFDGR 255
           L     Q+   L +        +L+  R
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSAR 250


>gi|209526441|ref|ZP_03274968.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209493076|gb|EDZ93404.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 369

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          IK L +  F+ +    L F    T+  G N  GK++IL+A+  L
Sbjct: 2  IKLLRLQNFKCFEDKSLAFQ-NLTLLSGLNSSGKSSILQALLLL 44


>gi|171679495|ref|XP_001904694.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939373|emb|CAP64601.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1587

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
            RI I +L ++ F++YA    +  F A  +  VG NG GK+N+++++ F+    GFR + 
Sbjct: 257 PRIVITYLVLTNFKSYAGKQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVF---GFRASK 313

Query: 61  YAD 63
              
Sbjct: 314 MRQ 316


>gi|282899814|ref|ZP_06307776.1| ATPase [Cylindrospermopsis raciborskii CS-505]
 gi|281195296|gb|EFA70231.1| ATPase [Cylindrospermopsis raciborskii CS-505]
          Length = 353

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ-------HTIFVGDNGVGKTNILEAI 47
          +KI+ L++  F+ + S    F            + +G NG GKT++L+ I
Sbjct: 1  MKIQSLDLRSFKKFRSSTFDFTDPETGLARDIIVLIGMNGAGKTSLLQVI 50


>gi|269468563|gb|EEZ80212.1| DNA repair protein RecN [uncultured SUP05 cluster bacterium]
          Length = 554

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ +K L +        L L FD   ++  G+ G GK+ +L+A++    GRG     
Sbjct: 1   MLAQLSVKNLAVV-----EHLDLSFDKGMSVVTGETGAGKSILLQALNLALGGRG----- 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
            + + R G      + +            +K ++ +D     L+
Sbjct: 51  DSSLVRHGKDKAEVSASFDVMQHKKIQNYLKEQSLEDDGECILR 94


>gi|21673821|ref|NP_661886.1| hypothetical protein CT0993 [Chlorobium tepidum TLS]
 gi|21646953|gb|AAM72228.1| hypothetical protein CT0993 [Chlorobium tepidum TLS]
          Length = 585

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++ I  L +  F+N       F     + VG N  GK+ +L+AI+ 
Sbjct: 3  KM-ITRLTLRNFKNVQEQTYEFTE-FDLLVGRNNSGKSTVLQAIAI 46


>gi|190341657|gb|ACE74905.1| RecN [Cronobacter sakazakii]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|255279883|ref|ZP_05344438.1| DNA replication and repair protein RecF [Bryantella formatexigens
          DSM 14469]
 gi|255269656|gb|EET62861.1| DNA replication and repair protein RecF [Bryantella formatexigens
          DSM 14469]
          Length = 115

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          IK      F+++    L  +A  T  +G N  GK+N +E IS L+
Sbjct: 2  IKCFAYENFKSFEKAELDIEA-LTTLIGTNSSGKSNAIEGISILA 45


>gi|212542011|ref|XP_002151160.1| DNA repair protein Rad50 [Penicillium marneffei ATCC 18224]
 gi|210066067|gb|EEA20160.1| DNA repair protein Rad50 [Penicillium marneffei ATCC 18224]
          Length = 1329

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 4  RIKIKFLNISEFRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          R KI  L+I   R++ +     + F    T+ VG NG GKT I+E + + + G
Sbjct: 30 RSKIDKLSILGVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 82



 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 77/245 (31%), Gaps = 41/245 (16%)

Query: 133  FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS------SI 186
                   RR++ D + +    R    +    + +  +N  +    F            ++
Sbjct: 1034 LKDSDNTRRQYSDNISYRQSCRLLEEVQREIQQLEEQNAEIDRSRFKEESERWTRKHNAL 1093

Query: 187  EAQMAELGVKINIARVEMINALSSL----------IMEYVQKENFPHIKLSLTGFLDGKF 236
             AQ A    ++     +++  L+              E   K       +   G   G  
Sbjct: 1094 AAQQASKMGEMKSKDDQLLQLLADWNTDYKDAAANYKEAHIKVETTKAAVDDLGRYGGAL 1153

Query: 237  DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT------------- 283
            D++         +++   R ++ + +RT  G     +++   ++                
Sbjct: 1154 DKAIMKYHSLKMEEI--NRIVEELWQRTYRGTDVDTILIRSDNENAKGNRSYNYRVCMVK 1211

Query: 284  -------IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
                       S G++ +  + I LA A       G   ++ LDE + +LD D   +L  
Sbjct: 1212 QGAEMDMRGRCSAGQRVLASIIIRLALAECFGVNCG---LIALDEPTTNLDRDNIRSLAE 1268

Query: 337  IVTDI 341
             + DI
Sbjct: 1269 SLHDI 1273


>gi|169600791|ref|XP_001793818.1| hypothetical protein SNOG_03248 [Phaeosphaeria nodorum SN15]
 gi|111068859|gb|EAT89979.1| hypothetical protein SNOG_03248 [Phaeosphaeria nodorum SN15]
          Length = 1217

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 90/318 (28%), Gaps = 45/318 (14%)

Query: 60   SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            + A +  I +       A+ E       ++  +E  + +  R           +DE+ K 
Sbjct: 875  TDAQIEEIRTQLGALEEAKAEKESSNRKLAAAMEKHEQQISRKDTDRSRYKAQLDEVRKE 934

Query: 120  LRISWLVPSMDRIFSGLSMERRRFLDRMVF--------------AIDPRHRRRMIDFERL 165
            +R    +P             R++                         +++    +E  
Sbjct: 935  IRNLGTLPEDVD---------RKYSRWDATKIAKELTKATSAQKQFAHVNKKAFEQYESW 985

Query: 166  MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE-NFPHI 224
             R R  L+       +   SIE  +A L  + + A       ++    E  Q+       
Sbjct: 986  TRQRKTLIDRRAELDTSRKSIENLIAVLDQRKDEAIARTFRQVAQAFQEVFQELVPIGQG 1045

Query: 225  KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
            +L +    D           E  +    + +           G     + V +  K    
Sbjct: 1046 RLIIKRRSDADVRGGVDDDDESGSDNEGETQAKKGSKVAEYTGVS---IAVSFNSKHDEQ 1102

Query: 285  AHGST---GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
               S    G++ +  + +  A           AP  L DEI A+LD   R A+  ++  +
Sbjct: 1103 QRISQLSGGQKSLCALALIFA-----IQKCDPAPFYLFDEIDANLDAQYRTAVAEMLKKL 1157

Query: 342  G----------SQIFMTG 349
                        Q   T 
Sbjct: 1158 SGQGGRTGEGGGQFICTT 1175



 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 7  IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          IK + I  F++Y        F  +  + VG NG GK+N   A+ F
Sbjct: 4  IKQITIQGFKSYKDQTQMEPFSPKCNVVVGRNGSGKSNFFAAVRF 48


>gi|88809367|ref|ZP_01124875.1| DNA repair protein RecN [Synechococcus sp. WH 7805]
 gi|88786586|gb|EAR17745.1| DNA repair protein RecN [Synechococcus sp. WH 7805]
          Length = 562

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 19/160 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG------- 53
           M   ++++ + + +     SL L FD   ++  G+ G GK+ +L+A+  +  G       
Sbjct: 1   MLTGLRLQNIALID-----SLDLAFDQGFSVLTGETGAGKSILLDALDAVLGGMQASAAS 55

Query: 54  RGFRRASYADVT----RIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQIND 107
           R  R      +     R+G  S      R +  +G  ++ +  E   +DDR     ++N 
Sbjct: 56  RLLRTGCDRALIEASFRVG-DSGQRWLKRHQLDDGEPELVVTREWRRQDDRLSSRSRLNG 114

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147
           VV+     L     +  L             ++RR+LDR+
Sbjct: 115 VVVNRHQLLELRPLLIDLTVQGQTQQLARPGQQRRWLDRL 154


>gi|116620799|ref|YP_822955.1| hypothetical protein Acid_1680 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223961|gb|ABJ82670.1| conserved hypothetical protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 381

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 63/383 (16%), Positives = 118/383 (30%), Gaps = 67/383 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + +  F+    + +   A  T+  G N  GK+ +L+AI   +  + +          
Sbjct: 2   LSRIRLENFKASREVDVRLTA-LTVLAGLNSSGKSTLLQAIG--ALRQSYGTN------- 51

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G    FS    +  +    D+  +    D   +  ++ N +  R        +  S L 
Sbjct: 52  -GCTDGFSLAGELVQLGKYVDLLTEGTPGDTVGITTVE-NGLDYRWS--FGGAVDASQL- 106

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
           P     F         F+    F                    +R+L +  +  +   + 
Sbjct: 107 PLSQLAFIETPPAAPEFVTTPDFQFL---------------QADRMLPKTLYPQAPQRAR 151

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEY--VQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++           AR E       +  +    +   FP   L LT  L  K   +   L 
Sbjct: 152 DSGF-------LGARGEYTADFLGMARKRSVARARTFPRTGLGLTQELLDKVAPTDGLLD 204

Query: 245 EE--YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD----------KAITIAHGSTGEQ 292
           +   + ++L  G ++DS     L G     L   Y            +   +  G     
Sbjct: 205 QVAGWLQQLSPGARLDS---TPLGGTDEVLLQFRYDGRRGEPTSNFYRPTNVGFG----- 256

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTG 349
               + I +A    ++   G   +LLL+   AHL    + AL  +V      G QI +  
Sbjct: 257 LTYSLPILVA---CLAAPRG--SLLLLENPEAHLHPQGQAALGELVARCASDGVQIIVET 311

Query: 350 TDKSVFDSLNETAKFMRISNHQA 372
               + + +    K   I N   
Sbjct: 312 HSDHLLNGVRLAVKRRIIDNGTV 334


>gi|124267000|ref|YP_001021004.1| putative chromosome partition protein [Methylibium petroleiphilum
          PM1]
 gi|124259775|gb|ABM94769.1| putative chromosome partition protein [Methylibium petroleiphilum
          PM1]
          Length = 1175

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++A         Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1  MRLNSIKLSGFKSFAEPTNFQLPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|330898642|gb|EGH30061.1| hypothetical protein PSYJA_14232 [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 614

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA----ISFL-SPGRGFRRA 59
          ++I  + +S+F+   SL +      T  VG N  GK++ L+A    +S L +  RG R  
Sbjct: 3  VRIDKIIVSDFKRIESLDIDLQP-VTALVGGNTSGKSSALQAAQLGVSILQAAFRGLRPN 61

Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD 97
                  GSP F  T A    +    ++ + L     
Sbjct: 62 --------GSPDFAGTVANDAVLFRPTELLLDLRRGGS 91


>gi|270294132|ref|ZP_06200334.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275599|gb|EFA21459.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1140

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT------IFVGDNGVGKTNILEAISF 49
          +K++ L I    +     + F+          +  G+ G GKT IL+AI  
Sbjct: 1  MKLQKLTIKNLASIEDAVIDFENGPLSEESLFLICGETGAGKTTILDAICL 51


>gi|255535366|ref|YP_003095737.1| DNA repair ATPase [Flavobacteriaceae bacterium 3519-10]
 gi|255341562|gb|ACU07675.1| ATPase involved in DNA repair [Flavobacteriaceae bacterium
          3519-10]
          Length = 699

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQ----HTIFVGDNGVGKTNILEAISFLSPGR 54
          +KI  +    FR Y     ++F        +I  G NG GKT  L ++ ++  G+
Sbjct: 1  MKINRIKFQNFRIYKGENEILFSPNPSKNISIIAGKNGFGKTTFLTSLIWVFYGK 55


>gi|224001944|ref|XP_002290644.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220974066|gb|EED92396.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 451

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 18/92 (19%)

Query: 278 CDKAITIAHG--STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
            D  ++ + G  S G+QK++L+   +A             +L+LDE S  LD   R  + 
Sbjct: 356 NDTFLSRSFGTLSQGQQKLLLIASAIAQ---------RPSLLILDEPSQGLDLWNRGHVL 406

Query: 336 RIVTDIGSQIF------MTGTDKSVFDSLNET 361
            +V  +  Q+       +T  ++ +  S+   
Sbjct: 407 ALVEMM-CQVTDMGLVYVTHHEEELIPSIGHR 437


>gi|160889882|ref|ZP_02070885.1| hypothetical protein BACUNI_02313 [Bacteroides uniformis ATCC
          8492]
 gi|317478886|ref|ZP_07938036.1| exonuclease SbcC [Bacteroides sp. 4_1_36]
 gi|156860874|gb|EDO54305.1| hypothetical protein BACUNI_02313 [Bacteroides uniformis ATCC
          8492]
 gi|316904968|gb|EFV26772.1| exonuclease SbcC [Bacteroides sp. 4_1_36]
          Length = 1140

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT------IFVGDNGVGKTNILEAISF 49
          +K++ L I    +     + F+          +  G+ G GKT IL+AI  
Sbjct: 1  MKLQKLTIKNLASIEDAVIDFENGPLSEESLFLICGETGAGKTTILDAICL 51


>gi|309780491|ref|ZP_07675239.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
 gi|308920765|gb|EFP66414.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
          Length = 366

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +I  L +  +++ A   L    +  + +G NG GK+N +
Sbjct: 10 QISRLVLHGYKSIAECDLELG-RLNVLIGANGAGKSNFI 47


>gi|303240748|ref|ZP_07327261.1| SMC protein-like protein [Acetivibrio cellulolyticus CD2]
 gi|302591636|gb|EFL61371.1| SMC protein-like protein [Acetivibrio cellulolyticus CD2]
          Length = 483

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 96/298 (32%), Gaps = 27/298 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + I  F+++ +  L F     + +G +  GK+ ++ AI ++            +  R
Sbjct: 4   INKVLIENFQSHENTELTFHDGLNVIIGPSDHGKSAVIRAIKWVLYNE----PRGNEFIR 59

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN--------- 117
            GS      FARV         +I  E    ++   L  ND    V +            
Sbjct: 60  QGSN-----FARVTLWLNT-GYTITRERTPSKNRYILSDNDGNSNVYEGFGNEVPHEVIK 113

Query: 118 -KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              +    L   ++   +        FL     ++  +   R+     + +      T+ 
Sbjct: 114 AHGIPKVMLDTDINSSINMGGQLEGPFLISESGSVRAKAIGRLTGLHIIDKSIRDSATDL 173

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL----SLTGFL 232
             ++     I  ++  +  K+N  R   ++ L   I             L    +LT   
Sbjct: 174 RRENQTRDRINDELVSVDEKLNEFR--YLDLLEDRIEVSSNHIKRIEEYLDRISTLTSIN 231

Query: 233 DGKFDQSFCALKEEY-AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
               D +    K  Y   +L    + + + ++  IG  R   + +  ++    +  ST
Sbjct: 232 GSLLDINQMYSKAAYELTRLEKLDECEMLLKKVEIGYMRLRSMDNLRNRYKDNSFAST 289


>gi|291458158|ref|ZP_06597548.1| conserved hypothetical protein [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291419241|gb|EFE92960.1| conserved hypothetical protein [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 573

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 95/312 (30%), Gaps = 37/312 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI---LEAISF------LSPGRG 55
           +K+  L I  F  +    L       +  G N  GK+ +   L ++ +        P R 
Sbjct: 1   MKLIELRIHGFGKFHDYTLPLSDGLNLIYGRNEAGKSTLHHFLRSMFYGLPSGGSLPARE 60

Query: 56  FRRASY--ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
           FR       +  R G     S     E      D S   E    RS +     D     +
Sbjct: 61  FRLHIRPWKNPERFGGELLVSYLG--ERYLIQRDFSAPDEGLSIRSEKSGIPLDKPGPFL 118

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI--DPRHRRRMIDFERLMRGRNR 171
            EL  HL                    R  +         D      +  + + M+    
Sbjct: 119 SELLCHLTE---------------KGYRNTVSIAQLHAKTDREMAGELRRYVKNMQESKS 163

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
               G     +    E ++ EL   ++   V+ ++ L+  I    ++   P  +  +  F
Sbjct: 164 SSISGERALRFLDEEEGRLREL---LDSGAVKELSLLTGEIRNLERELENPRYENRIRRF 220

Query: 232 LDGKFD--QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
              + +  ++   L+    + L      + + R  L G    + I     KA  +     
Sbjct: 221 AALREEARENLAELQRRKEELLRRNSGKEEVLR--LSGLSDQEEIEKEEGKAEGLYRALQ 278

Query: 290 GEQKVVLVGIFL 301
            E+K  ++ + L
Sbjct: 279 EEKKSSVLRLLL 290



 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 71/194 (36%), Gaps = 11/194 (5%)

Query: 170 NRLLTEGYFDSSWCSSIEAQM---AELGVKINIA--RVEMINALSSLIMEYVQKENFPHI 224
           N +L+E     +     + ++    EL  ++     R+  +      ++  V++      
Sbjct: 351 NAVLSELEEKENAEKGYDEELLRQHELQTELEGKLERLSQLRTRELRLLSSVRENGRIER 410

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFD--GRKMDSMSRRTLIGPHRSD---LIVDYCD 279
            L        +  +    + E + + L +  GR +  ++          D   L +   +
Sbjct: 411 HLDALSLARERISELSLRISESFGRHLNEKAGRILSEITGGRYRSLFVDDSLELFIGSGE 470

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           + + +   S G    V + + LA + L+         L LDE  A  DE++  +    ++
Sbjct: 471 RMLKLKELSLGTMDQVYLALRLAVSSLMQEEAPERLPLFLDESFALYDEERLKSCLHFLS 530

Query: 340 DI-GSQIFMTGTDK 352
           D+ G QI +    K
Sbjct: 531 DMTGEQILLFSCHK 544


>gi|218245493|ref|YP_002370864.1| SMC domain-containing protein [Cyanothece sp. PCC 8801]
 gi|257058528|ref|YP_003136416.1| SMC domain protein [Cyanothece sp. PCC 8802]
 gi|218165971|gb|ACK64708.1| SMC domain protein [Cyanothece sp. PCC 8801]
 gi|256588694|gb|ACU99580.1| SMC domain protein [Cyanothece sp. PCC 8802]
          Length = 367

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          ++ + +  +++   L L  D +  I +G NG GK+N +
Sbjct: 2  LRKIELKGYKSIKDLTLELD-KINILIGANGSGKSNFI 38


>gi|91070582|gb|ABE11482.1| DNA repair protein RECN, ABC transporter [uncultured
           Prochlorococcus marinus clone HOT0M-8F9]
          Length = 559

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 56/166 (33%), Gaps = 26/166 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   +KI+ + +        + + F+    I  GD+G GK+ IL++++ L  G       
Sbjct: 1   MLIHLKIENIAL-----IEIIEINFEKGLNIITGDSGSGKSLILDSLNALFGGT---NIP 52

Query: 61  YADVTRIGSPSFFSTFAR----------VEGMEGLADISIKLETRDDRSVRCLQ----IN 106
              + R G                    +     +    ++++ +  +    +     +N
Sbjct: 53  LKHLIRPGKDFCVIKAIFSSSPQINNWLISNGFEITSSELQIKRKSYKKNNKIFSKYSLN 112

Query: 107 DVVIRV--VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
           D+ I    +++L   L         D        +RR  +D +   
Sbjct: 113 DLPINKQPLEKLGGFL--IDFAGQSDTFIFDSLDKRRLIIDDLSSQ 156


>gi|19075000|ref|NP_586506.1| putative NUCLEAR PROTEIN OF THE SMC FAMILY [Encephalitozoon
          cuniculi GB-M1]
 gi|19069725|emb|CAD26110.1| putative NUCLEAR PROTEIN OF THE SMC FAMILY [Encephalitozoon
          cuniculi GB-M1]
          Length = 1025

 Score = 44.5 bits (104), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
          I  + +  F+ +  + L F +      G NG GK++I  A+  L  G       R  +  
Sbjct: 9  IVSMELENFQTFKKMSLGFCSSFNFIAGPNGSGKSSIANAM-VLVFGGTPKVIGRGKTVG 67

Query: 63 DVTRIGS-PSFFSTFARVEGMEGL 85
          +  R G   +       ++G E  
Sbjct: 68 EYVRFGEREAKIEVVVWIKGKETR 91


>gi|308061527|gb|ADO03415.1| hypothetical protein HPCU_01155 [Helicobacter pylori Cuz20]
          Length = 1009

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 11/54 (20%)

Query: 5  IKI--KFLNISEFRNYA---------SLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K+  + L +  FRN           +          I VG+N VGK+NILEA+
Sbjct: 1  MKLYKRVLKLHHFRNLGKNLPTELLLNSNFENQGGLVILVGENNVGKSNILEAL 54


>gi|224418926|ref|ZP_03656932.1| hypothetical protein HcanM9_06580 [Helicobacter canadensis MIT
           98-5491]
 gi|253827877|ref|ZP_04870762.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313142441|ref|ZP_07804634.1| predicted protein [Helicobacter canadensis MIT 98-5491]
 gi|253511283|gb|EES89942.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131472|gb|EFR49089.1| predicted protein [Helicobacter canadensis MIT 98-5491]
          Length = 566

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 47/371 (12%), Positives = 120/371 (32%), Gaps = 65/371 (17%)

Query: 5   IKIKFLNISEFRNYASLRL------VFDAQHTIFVGDNGVGKT----NILEAISFLSPGR 54
           + ++ + I       +L          + +  + VG+NG GKT    NI+++   +    
Sbjct: 1   MYLEKIIIKNISAIKNLEFTSSFTKEGNPKPIVIVGENGSGKTTLLSNIIDSFYEIG--- 57

Query: 55  GFRRASYADVTRIGSPSFFSTFARVEGMEG---LADISIKLETRDDRSVRCLQINDVVIR 111
                           + F+  AR+E         +  + L   +++    ++     ++
Sbjct: 58  ---------------SALFTNVARMENTSRNFYKVNGELNLSCNENKGFAIIKYKSKAMQ 102

Query: 112 VVDELNKHLRIS---WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
              E   ++  +           + + +     +F +  +  +      +   ++   R 
Sbjct: 103 NPIEYIDYINCNTDDIKEFCSLNLQTAIGKIITQFSENNIENLQKEWHTQAHYYQPANRY 162

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
                    F+ ++    E Q       +    +E+I +        +         + L
Sbjct: 163 EEPFWKNPNFNINFKE--EKQY----NNVYNKELEIITSFEKNYSYIM--------DIVL 208

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFD----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
               D K   +     E+  +++        ++   +  + IG  + +         +  
Sbjct: 209 DKLADSKEANNILNAIEKILQEIKQDKTSNFRLLHRNFGSRIGIDKDEKPFLSNINQL-- 266

Query: 285 AHGSTGEQKVVLVGI---FLAHARLISNTTGF-APILLLDEISAHLDEDKRNALFRIVTD 340
              S GE  + L+ +    + H  L + T      I+++DEI AHL  D ++ +   +  
Sbjct: 267 ---SLGE--LTLLNLFINIIRHTDLSNETMDKLEGIVVIDEIDAHLHSDLQSKVLPSLIK 321

Query: 341 I--GSQIFMTG 349
           +    Q  +T 
Sbjct: 322 LFPKIQFIITT 332


>gi|257058218|ref|YP_003136106.1| SMC domain protein [Cyanothece sp. PCC 8802]
 gi|256588384|gb|ACU99270.1| SMC domain protein [Cyanothece sp. PCC 8802]
          Length = 448

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 12/76 (15%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          +K + + ++ F+++    +       + +G N  GK+N ++   FL            D+
Sbjct: 1  MKFERVKVANFKSFDDCEVKLKD-FNVVIGANASGKSNFVQIFRFL-----------RDI 48

Query: 65 TRIGSPSFFSTFARVE 80
             G  +  S    VE
Sbjct: 49 QLHGLENAISLQGDVE 64


>gi|182417321|ref|ZP_02948660.1| DNA repair protein RecN [Clostridium butyricum 5521]
 gi|237668188|ref|ZP_04528172.1| DNA repair protein RecN [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378829|gb|EDT76348.1| DNA repair protein RecN [Clostridium butyricum 5521]
 gi|237656536|gb|EEP54092.1| DNA repair protein RecN [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 562

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 84/250 (33%), Gaps = 29/250 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI  F     + + F     I  G+ G GK+ +++AI F+  G+ F       + R
Sbjct: 2   LIQLNIKNFALIEEMTINFKEGFNILSGETGAGKSIMIDAIDFVLGGK-F----SKSLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G    +           + ++  +L+   D     L I+    +    L K    S + 
Sbjct: 57  TGEDRTYVEALFTLDGSKVCEVLDELDIEYDD---VLIISRESHQSGKNLIKINGKSLIT 113

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
             + R+       R + LD      +      ++    ++          Y D     SI
Sbjct: 114 SQLKRV-------RAKLLDIHGQHQNQ---ELLLRSSHIL----------YLDGFIDKSI 153

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
           E  + +    +  + +++   L  +     +++   ++K  +      K  ++      E
Sbjct: 154 EEPLNKY-TVLRESLLQVREDLKRITGNQDREKLLDYLKFQIEDIEKAKLKENEEDTLRE 212

Query: 247 YAKKLFDGRK 256
               L +  K
Sbjct: 213 EYNILANAEK 222


>gi|82703536|ref|YP_413102.1| DNA repair protein RecN [Nitrosospira multiformis ATCC 25196]
 gi|82411601|gb|ABB75710.1| DNA replication and repair protein RecN [Nitrosospira multiformis
           ATCC 25196]
          Length = 563

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 32/211 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +KFL I +F     + L F    T+  G+ G GK+ +++A+S +   R       A   R
Sbjct: 2   LKFLGIRDFVIVDRIDLEFAPGFTVLTGETGAGKSILIDALSLVLGERS-----DASAVR 56

Query: 67  IGSPSFFSTFA-------------RVEGMEGLADISIKLETR----DDRSVRCLQINDVV 109
            G      +                  G E   +  + L  R      RS   +  N   
Sbjct: 57  NGCERAEISAGFEVADLPEVIAWLHENGFENTEEEGVCLLRRLVDAGGRSRSFINGNSAT 116

Query: 110 IRVVDELNKHL---RISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFER 164
           ++ +  + ++L   +   +  SM R     S  +R  LD    +  +  +       ++ 
Sbjct: 117 LQQLRAIGENLVDIQGQHVHQSMLR-----SEVQRELLDSYAGSKPLARQVAEAYRRWQT 171

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
             + R                +E Q+ EL  
Sbjct: 172 ARQQREAWEQNAAAFVREREELEWQVNELST 202


>gi|27468118|ref|NP_764755.1| DNA repair protein [Staphylococcus epidermidis ATCC 12228]
 gi|57867000|ref|YP_188657.1| DNA repair protein RecN [Staphylococcus epidermidis RP62A]
 gi|251810932|ref|ZP_04825405.1| DNA repair protein RecN [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876059|ref|ZP_06284926.1| DNA repair protein RecN [Staphylococcus epidermidis SK135]
 gi|293366524|ref|ZP_06613201.1| DNA repair protein RecN [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315664|gb|AAO04799.1|AE016748_33 DNA repair protein [Staphylococcus epidermidis ATCC 12228]
 gi|57637658|gb|AAW54446.1| DNA repair protein RecN [Staphylococcus epidermidis RP62A]
 gi|251805612|gb|EES58269.1| DNA repair protein RecN [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295084|gb|EFA87611.1| DNA repair protein RecN [Staphylococcus epidermidis SK135]
 gi|291319293|gb|EFE59662.1| DNA repair protein RecN [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329735262|gb|EGG71554.1| DNA repair protein RecN [Staphylococcus epidermidis VCU045]
 gi|329737397|gb|EGG73651.1| DNA repair protein RecN [Staphylococcus epidermidis VCU028]
          Length = 558

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 83/240 (34%), Gaps = 25/240 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2   LQTLSIKQFAIIDELDINFSDGLTVMSGETGSGKSIIIDAIGQLI---GMRASSD--YVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G           +  E    I+I      D     L +   +      + +      + 
Sbjct: 57  HGEKKAI-IEGIFDIDESKDAINILESLAIDVDEDFLLVKREIFSSGKSICRINN-QTVT 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL-LTEGYFDSSWCSS 185
               R         +  LD               + + L++ +  L L + Y D+ +   
Sbjct: 115 LQDLR------KVMQELLDIHGQH----------ETQSLLKQKYHLQLLDDYADNQYSDL 158

Query: 186 IEA-QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +   Q++    K     +E + +    +++ +    F   +L+     +G+ DQ    +K
Sbjct: 159 LNQYQLSYNQYKNKRKELEELESADQALLQRLDLMKFQLEELTEASLKEGEVDQLESDIK 218


>gi|325187989|emb|CCA22531.1| hypothetical protein CHGG_09697 [Albugo laibachii Nc14]
          Length = 1386

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 2   TNRIKIKFLNISEFRNYASL-RL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
           + R+ I  + +  F++YA +  +  F    +  VG NG GK+N+++A+ F+   R    R
Sbjct: 57  STRLVITKMQLENFKSYAGIIEIGPFHNNFSAVVGPNGSGKSNVIDAMLFVFGKRASKLR 116

Query: 58  RASYADVTRIGSP 70
               +++      
Sbjct: 117 LKKISELIHRSEQ 129


>gi|325297205|ref|YP_004257122.1| hypothetical protein Bacsa_0034 [Bacteroides salanitronis DSM
           18170]
 gi|324316758|gb|ADY34649.1| hypothetical protein Bacsa_0034 [Bacteroides salanitronis DSM
           18170]
          Length = 634

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 111/364 (30%), Gaps = 54/364 (14%)

Query: 6   KIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
            I  + I  F+ +     LV + ++ +  G+NG GK++I  A+  L   +          
Sbjct: 3   AISKIRIDGFKAFPKEFELVLNGKNLLMYGENGSGKSSIYYALHALLQSQYH----DKGA 58

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV-VIRVVDELNKHLRIS 123
                 S  S     +       I I+LE  + +     +  +    + +  L       
Sbjct: 59  IYFDKNSPESI-VNKDTTTAEPYIEIELEGSETKYRLSKKGYEEFPHQPISPLRDMNAEC 117

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID---------FERLMRG----RN 170
             +     +F   S     ++D     I       +           ++ +M+G    RN
Sbjct: 118 VFINHKF-LFRTFSFRNSEYIDLFPVFIKDILPFVLTRDNAEYIGNIYDDVMKGIRFYRN 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKE--NFPHIKLSL 228
             L + Y       +IE Q               +N ++        +   N    KL L
Sbjct: 177 NQLEDSYKKRIDKFNIETQYV-------------VNLINKNASVIYNENFRNNDERKLRL 223

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS------------DLIVD 276
           T   D   D+     K  + +  +  R ++                         D+   
Sbjct: 224 TLEFDNNLDEVPSPDKSYWLRCDYRYRHINVAGAWEQKNIGLDILQPSIILKVEEDIEGT 283

Query: 277 YCDKAITIAHGSTGEQKVVLVGI--FLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           Y        + +  E K+  + +    +   +IS + G    + LD++   LD   R  +
Sbjct: 284 YKPIKKPQTYFN--EAKLTAIALSVRFSLLDIISASNGR--FMALDDMLISLDMSNRMKV 339

Query: 335 FRIV 338
            + +
Sbjct: 340 IKYL 343


>gi|309781342|ref|ZP_07676078.1| DNA repair protein RecN [Ralstonia sp. 5_7_47FAA]
 gi|308919755|gb|EFP65416.1| DNA repair protein RecN [Ralstonia sp. 5_7_47FAA]
          Length = 568

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 16/115 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F    +L L      T+F G+ G GK+ +++A   L+   G R  + A V R
Sbjct: 2   LRSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDA---LALTLGER--ADAAVVR 56

Query: 67  IGSPSFFS---------TFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVI 110
            G+P               A +E  E   D  + L  R  D        IN   +
Sbjct: 57  EGAPRADITAEFDVHPHVAAWLEAHELHDDEGVILLRRTVDAAGRSKAFINGAAV 111


>gi|293372859|ref|ZP_06619233.1| DNA repair protein RecN [Bacteroides ovatus SD CMC 3f]
 gi|292632148|gb|EFF50752.1| DNA repair protein RecN [Bacteroides ovatus SD CMC 3f]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 17/201 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  R  +  
Sbjct: 2   LRSLYIQNYALIEKLDISFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRHGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            +   R   S     +F     +E   +  ++ E +     R   IND       V EL 
Sbjct: 62  CIIEARFDISAYGMRSFFEENELEYDEECILRREVQSSGKSRAF-INDTPASLAQVKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMV---FAIDPRHR--RRMIDFERLMRGRNRL 172
           + L           +       +   LD +     A+   H         +R +     L
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLDILAHNDAALAKYHLCYDEWKQTDRELAELVSL 178

Query: 173 LTEGYFDSSWCSSIEAQMAEL 193
             +   D  +      Q+ E 
Sbjct: 179 AEKSRSDEDYIRFQLEQLEEA 199


>gi|262202725|ref|YP_003273933.1| DNA repair protein RecN [Gordonia bronchialis DSM 43247]
 gi|262086072|gb|ACY22040.1| DNA repair protein RecN [Gordonia bronchialis DSM 43247]
          Length = 590

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 85/269 (31%), Gaps = 27/269 (10%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRASYADVTR------- 66
             +    F    T+  G+ G GKT I+ ++  LS  R      R  S   V         
Sbjct: 13  IEAASARFHPGFTVLTGETGAGKTMIVTSLHLLSGARADANRVRNGSPKAVVEGRFRLPG 72

Query: 67  IGSPSFFSTFARVEGMEGLADI--SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            GS +  +  + ++    +A+I  S   E  DD +V  ++      R    L        
Sbjct: 73  QGSAAAGTQTSGIQQDSVVAEILESTGAELDDDDTVIAVRTVGADGRSRAHLGGRSVPVG 132

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
           +   M R+ + +     +  +  +  + P H+R  +D     R    L        +W  
Sbjct: 133 V---MGRLTNAVLAIHGQ--NDQLRLLRPEHQRAALDAFAGARADKALTAYRRARDAWIE 187

Query: 185 SIEAQMAELGVKINIAR--VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
            ++    EL  +    R   +  + L   I E    +  P     L   +    D     
Sbjct: 188 ILD----ELDARRANYREIAQEADRLRFGIDEIAAVDPAPGEDEELAATIRRLTDLESIR 243

Query: 243 LKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
                ++ L  G     +     +G  R 
Sbjct: 244 TAAATSQDLVAGDGRSVIEG---LGQVRD 269


>gi|190341641|gb|ACE74897.1| RecN [Cronobacter sakazakii]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|87199753|ref|YP_497010.1| DNA repair protein RecN [Novosphingobium aromaticivorans DSM 12444]
 gi|87135434|gb|ABD26176.1| DNA replication and repair protein RecN [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 554

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 26/205 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I       +L L F     +  G+ G GK+ +L+A+  +   R     + + + R
Sbjct: 2   LTSLSIRNVVLIEALDLSFGGGLGVLTGETGAGKSILLDALGLVLGDR-----ADSGLVR 56

Query: 67  IGSPSFFSTF-----------------ARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
            G      T                  A ++   G   + +K   + D   R    +  V
Sbjct: 57  AGEDQASVTATFEFDRLPDAIRQALAEAEIDVEPGE-PLIVKRRLKADGGSRAFINDQPV 115

Query: 110 -IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
            + ++ EL + L           + +  +   R  LDR   A           + +    
Sbjct: 116 GVALLRELARSLVELHGQHDDRGLVN--ARGHRALLDRYAGADVAGVEAAWGKWRKAEEA 173

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL 193
                 +    +     + A +AEL
Sbjct: 174 LAAARAQVARAAEEQDLLLAHLAEL 198


>gi|295110147|emb|CBL24100.1| Predicted ATPases [Ruminococcus obeum A2-162]
          Length = 368

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 11/92 (11%)

Query: 5  IK-IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY-- 61
          +K I  +NI  FR   +LRL   AQ  I  G+N  GKT++LE I         R+     
Sbjct: 1  MKNINEINIKSFRGIRNLRLTDLAQVNIIAGNNNCGKTSVLEIIE------SLRQPDDIL 54

Query: 62 --ADVTRIGSPSFFSTFARVEGMEGLADISIK 91
            + ++R  + S  +  +  EG+  L DI+I+
Sbjct: 55 MWSSLSRRTTTSMRNRMSFYEGIYDLFDINIE 86


>gi|190341693|gb|ACE74923.1| RecN [Cronobacter turicensis]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 93/276 (33%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++  LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKHLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQAGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|239629037|ref|ZP_04672068.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519183|gb|EEQ59049.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 620

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 85/266 (31%), Gaps = 29/266 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP------GRGFRR 58
           +KI  L+I  F       + F     +  G N  GK+ +   I  +        GR  R 
Sbjct: 1   MKILSLHIDGFGKLHDQDISFQDGMNVVYGKNEAGKSTLHTFIKGMLFGLERQRGRAARN 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD---E 115
            +Y+          +  + R+E    +  I  +   R         +N+ + R ++    
Sbjct: 61  DTYSRYEPWQGSGTYEGWLRLESEGQVYRIQRRFHKRGRE---LTIVNETLGRELEPTKA 117

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L   LR      + D   S         + ++  A D      + ++   +     +   
Sbjct: 118 LLDQLRCGLSETAYDNTIS---------IGQLKCATDGGMVSELRNYIANLNTSGSIALN 168

Query: 176 GYFDSSWCSS----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
               +++  +    +E QM     +   +   ++  +  +  E    E    +    T  
Sbjct: 169 ITKATAYLKAQRRELENQMVPEAAR---SYAALLGEIRKIEQEISAPEYANQLIACRTRK 225

Query: 232 LDGKFD-QSFCALKEEYAKKLFDGRK 256
           ++ +    +    KE   +K   GR+
Sbjct: 226 MEIRQQLDNLQKEKEGLLEKTAKGRQ 251


>gi|184157182|ref|YP_001845521.1| putative ABC oligo/dipeptide transport, ATP-binding protein
          [Acinetobacter baumannii ACICU]
 gi|183208776|gb|ACC56174.1| putative ABC oligo/dipeptide transport, ATP-binding protein
          [Acinetobacter baumannii ACICU]
 gi|322507079|gb|ADX02533.1| putative ABC oligo/dipeptide transport, ATP-binding protein
          [Acinetobacter baumannii 1656-2]
          Length = 573

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 1  MTNRI-KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          MT+ I ++K + ++ FR   ++ +    + T+  G NG  K+ IL
Sbjct: 1  MTSNITQLKKIKVNHFRGLKNIEINLGDRLTVICGKNGTSKSTIL 45


>gi|15827553|ref|NP_301816.1| hypothetical protein ML1120 [Mycobacterium leprae TN]
 gi|221230030|ref|YP_002503446.1| hypothetical protein MLBr_01120 [Mycobacterium leprae Br4923]
 gi|13093103|emb|CAC31501.1| conserved hypothetical protein [Mycobacterium leprae]
 gi|219933137|emb|CAR71215.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
          Length = 873

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFV-GDNGVGKTNILEAISFL 50
          +K+  L ++ +R  A   + F  +  I V G N +GK++++EA+  L
Sbjct: 1  MKLHRLALTNYRGTARREIEFPDRGVILVCGANEIGKSSMIEALDLL 47


>gi|331091272|ref|ZP_08340113.1| DNA repair protein RecN [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330404719|gb|EGG84258.1| DNA repair protein RecN [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 558

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 10/118 (8%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + IK L + +      + + F+    I  G+ G GK+ IL ++     G+      
Sbjct: 1   MLQNLHIKNLALID-----EIEVDFEEGLNILTGETGAGKSIILGSVHLALGGK-----Y 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            AD+ R G+             E   +   KL+   + +        +  R V  +N 
Sbjct: 51  NADMLRKGASYGLVELTFQIREEECKEALEKLDIFPEENEVVFSRKLMEGRSVSRING 108


>gi|325278763|ref|YP_004251305.1| AAA ATPase [Odoribacter splanchnicus DSM 20712]
 gi|324310572|gb|ADY31125.1| AAA ATPase [Odoribacter splanchnicus DSM 20712]
          Length = 550

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 5  IKIKFLNISE--FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +KIK ++  +  FR + +L +    + T+  G NG+GK+ +L  I+  S  + 
Sbjct: 1  MKIKSISFGDIPFRMFRNLTINISERLTVIAGHNGIGKSTLLGLIANGSELKS 53


>gi|260584239|ref|ZP_05851987.1| hypothetical protein HMPREF0446_00815 [Granulicatella elegans ATCC
           700633]
 gi|260158865|gb|EEW93933.1| hypothetical protein HMPREF0446_00815 [Granulicatella elegans ATCC
           700633]
          Length = 894

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 66/189 (34%), Gaps = 32/189 (16%)

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
           W + +E Q+ E    +           S  I+E +QK+                      
Sbjct: 735 WKAEVEEQLVEWASYLYA---------SKWILESLQKQL-------------PSQTNEVI 772

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
            +   Y  +L  GR      +   I   ++D    +       +  S G    +LV I L
Sbjct: 773 KVAGHYFNRLTQGRYHGIQMKNMKIVVQKNDENWLF------ASELSRGTLDQLLVSIRL 826

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLN 359
           A    +  ++  A  +L+D+   + D +++  + +++ ++ S  Q+     D   F    
Sbjct: 827 AFIENL--SSKIALPILIDDGFVNFDSERKQIMLQLIKELSSKVQVIYFSLDNEPFTIAE 884

Query: 360 ETAKFMRIS 368
             A  +R+ 
Sbjct: 885 TPASLIRLQ 893


>gi|256087873|ref|XP_002580087.1| structural maintenance of chromosomes smc2 [Schistosoma mansoni]
 gi|238665593|emb|CAZ36326.1| structural maintenance of chromosomes smc2, putative [Schistosoma
          mansoni]
          Length = 1162

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 25 FDAQHTIFVGDNGVGKTNILEAISFLS--PGRGF-RRASYADVT 65
          FD Q     G NG GK+NIL+AI FL         R A+  ++ 
Sbjct: 19 FDPQFNAITGLNGSGKSNILDAICFLLGITNLSHVRAANLHELV 62


>gi|190341589|gb|ACE74871.1| RecN [Pantoea sp. E147]
          Length = 553

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L IS F     L + F    T   G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2  LAQLTISNFAIVRELDIDFQRGMTAITGETGAGKSIAIDALGLCLGGR-----ADADMVR 56

Query: 67 IGSPSF 72
           G+   
Sbjct: 57 QGASRA 62


>gi|163753837|ref|ZP_02160960.1| putative ABC transporter ATP-binding protein [Kordia algicida
          OT-1]
 gi|161326051|gb|EDP97377.1| putative ABC transporter ATP-binding protein [Kordia algicida
          OT-1]
          Length = 703

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEFR-----NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + IK + +  FR     N   L +  D    I  G NG GKT  L ++ +   GR
Sbjct: 1  MIIKSIELDNFRIYKGNNIIDLSVTDDENIIIVSGKNGFGKTTFLMSLVWCLYGR 55


>gi|150003256|ref|YP_001298000.1| hypothetical protein BVU_0672 [Bacteroides vulgatus ATCC 8482]
 gi|149931680|gb|ABR38378.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
          Length = 329

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
            L+I  F+++    L      TI  G N  GK+ +++AI  L+ G
Sbjct: 5  NQLDIQGFKSFEYASLSLHP-LTILTGLNSSGKSTVIQAIRMLAQG 49


>gi|10954501|ref|NP_044137.1| hypothetical protein MJECL10 [Methanocaldococcus jannaschii DSM
          2661]
 gi|2496216|sp|Q60272|Y3510_METJA RecName: Full=Uncharacterized protein MJECL10
 gi|1522650|gb|AAC37083.1| hypothetical protein MJ_ECL10 [Methanocaldococcus jannaschii DSM
          2661]
          Length = 219

 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          I+ ++I  FR    L+L    Q  I  G N   K++ILEA++     +
Sbjct: 12 IETIHIKNFRGIRELKLENLGQINIIAGKNNASKSSILEALALFLSAK 59


>gi|329725396|gb|EGG61879.1| DNA repair protein RecN [Staphylococcus epidermidis VCU144]
          Length = 558

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 83/240 (34%), Gaps = 25/240 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S     R
Sbjct: 2   LQTLSIKQFAIIDELDINFSDGLTVMSGETGSGKSIIIDAIGQLI---GMRASSD--YVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G           +  E    I+I      D     L +   +      + +      + 
Sbjct: 57  HGEKKAI-IEGIFDIDESKDAINILESLAIDVDEDFLLVKREIFSSGKSICRINN-QTVT 114

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL-LTEGYFDSSWCSS 185
               R         +  LD               + + L++ +  L L + Y D+ +   
Sbjct: 115 LQDLR------KVMQELLDIHGQH----------ETQSLLKQKYHLQLLDDYADNQYSDL 158

Query: 186 IEA-QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           +   Q++    K     +E + +    +++ +    F   +L+     +G+ DQ    +K
Sbjct: 159 LNQYQLSYNQYKNKRKELEELESADQALLQRLDLMKFQLEELTEASLKEGEVDQLESDIK 218


>gi|293115417|ref|ZP_05791371.2| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
 gi|292810187|gb|EFF69392.1| conserved hypothetical protein [Butyrivibrio crossotus DSM 2876]
          Length = 626

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 26/43 (60%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          ++I+++ IS F++  +L +       I VG N  GK+ +++AI
Sbjct: 2  MRIEYIRISNFKSIDNLEIKDIENALILVGQNNTGKSTVIDAI 44


>gi|160946002|ref|ZP_02093228.1| hypothetical protein FAEPRAM212_03535 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443733|gb|EDP20738.1| hypothetical protein FAEPRAM212_03535 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1185

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 14/126 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA- 62
           +  K L I  F+++   +++ FD   T  VG NG GK+N+ +A+ ++      R+   A 
Sbjct: 1   MVFKELEIQGFKSFPDKVKISFDTGVTGVVGPNGSGKSNLSDAVRWVLGETSSRQLRAAG 60

Query: 63  ---DVTRIGSP-----SFFSTFARVEGMEGLADI---SIKLETRDDRSVRC-LQINDVVI 110
              DV   G+       F      ++      D+    + +  +  RS      IN  V 
Sbjct: 61  KMEDVIFGGTRKRSPMGFAQVRLTLDNAAHTLDVDADEVTIGRKYYRSGDSEYTINGQVC 120

Query: 111 RVVDEL 116
           R+ D  
Sbjct: 121 RLRDVY 126


>gi|150020978|ref|YP_001306332.1| ATP-dependent OLD family endonuclease [Thermosipho melanesiensis
          BI429]
 gi|149793499|gb|ABR30947.1| ATP-dependent endonuclease of the OLD family-like protein
          [Thermosipho melanesiensis BI429]
          Length = 616

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KI  + +  FR +     +     T+F+G N  GK+ ILEAI
Sbjct: 1  MKIAKVILENFRAFYGRNEIPIEDFTVFIGRNDQGKSTILEAI 43


>gi|81871233|sp|Q8CG46|SMC5_MOUSE RecName: Full=Structural maintenance of chromosomes protein 5;
           Short=SMC protein 5; Short=SMC-5; Short=mSMC5; AltName:
           Full=Protein expressed in male leptotene and zygotene
           spermatocytes 453; Short=MLZ-453
 gi|26986202|emb|CAD59184.1| SMC5 protein [Mus musculus]
 gi|148709654|gb|EDL41600.1| mCG5312, isoform CRA_c [Mus musculus]
          Length = 1101

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 84/308 (27%), Gaps = 49/308 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y    +       + +G NG GK++I+ AI     G+         V  
Sbjct: 53  IVRIAMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 112

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN   +  ++V+E    L I  
Sbjct: 113 FVKRGCSKGLVEIELFRTSGNLIITREIDVIKNQSFWFINKKPVTQKIVEEQVAALNIQV 172

Query: 125 -----LVPSM----------DRIFS------GLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                 +P              +        G     R   +          R +    E
Sbjct: 173 GNLCQFLPQDKVGEFAKLSKIELLEATEKSVGPPEMHRYHCEL------KNFREKEKQLE 226

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
              + +   L +    +              V+    R   ++ L  ++        + +
Sbjct: 227 TSCKEKTEYLEKMVQRNERYKQ--------DVERFYERKRHLD-LIEMLEAKRPWVEYEN 277

Query: 224 IKLSLTG--FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           ++    G   +  +  +    LKE          ++D           R  L V   +K+
Sbjct: 278 VRQEYEGVKLIRDRVKEEVRKLKEGQIPMTRRIEEIDR---------QRHTLEVRIKEKS 328

Query: 282 ITIAHGST 289
             I   S 
Sbjct: 329 TDIKEASQ 336


>gi|46121453|ref|XP_385281.1| hypothetical protein FG05105.1 [Gibberella zeae PH-1]
          Length = 1180

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRA 59
           +++  + I  F++YA   +   +D       G NG GK+NIL+AI F+         R  
Sbjct: 1   MRVIEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITSMATVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NIQDLIYKRGQAGVTKASVTIVFDNRDTKKSPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + S + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINSPNFLIMQG 148


>gi|317138239|ref|XP_001816777.2| DNA repair protein Rad50 [Aspergillus oryzae RIB40]
          Length = 1448

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 4   RI-KIKFLNISEFRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           ++ KI  L+I   R++ +     + F    T+ VG NG GKT I+E + + + G
Sbjct: 130 KMSKIDKLSILGVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 183


>gi|313905338|ref|ZP_07838704.1| DNA repair protein RecN [Eubacterium cellulosolvens 6]
 gi|313469808|gb|EFR65144.1| DNA repair protein RecN [Eubacterium cellulosolvens 6]
          Length = 561

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 14/120 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L + +        + F     I  G+ G GK+ ++ +I+     +  R   
Sbjct: 1   MLTNLHVKNLALID-----EAEVNFGPGLNILTGETGAGKSILIGSINIALGQKMSR--- 52

Query: 61  YADVTRIGSPSFFS-TFARVEGMEGLADI-SIKLETRDDRSVRCLQINDVVIRVVDELNK 118
             ++ R G  S       +VE       + ++ +ET D + +   + ND   R +  LN 
Sbjct: 53  --EMIRKGQTSALVELVFQVENQAVREKLKTLDVETEDGQLIITRKYND--GRSISRLNG 108


>gi|301312200|ref|ZP_07218119.1| probable ATP-binding protein [Bacteroides sp. 20_3]
 gi|300829875|gb|EFK60526.1| probable ATP-binding protein [Bacteroides sp. 20_3]
          Length = 345

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 13/142 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYA--- 62
           I  + +++F  +A+ R  F     + +G NG GKT++L+ ++     R  F   + A   
Sbjct: 2   INSILLTDFTGFANTRFDFTKGINVLIGKNGTGKTHVLKCLAATLQARHDFLGKNSASKE 61

Query: 63  --------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                   D+     P             G A+I++ ++ +  R          V    D
Sbjct: 62  QFEYILAEDMIFYFKPDVIGNLVNKGVPSGRANITVTIDGKLLRYSFSSASKTTVKLETD 121

Query: 115 ELNKHLRISWLVP-SMDRIFSG 135
           E        ++ P  M  +F G
Sbjct: 122 EKWDDRHFIYIPPREMFSLFEG 143


>gi|300974244|ref|ZP_07172517.1| DNA sulfur modification protein DndD [Escherichia coli MS 45-1]
 gi|300410652|gb|EFJ94190.1| DNA sulfur modification protein DndD [Escherichia coli MS 45-1]
          Length = 666

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 75/232 (32%), Gaps = 31/232 (13%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
           +     +R ++ + E+ +      +     D       E ++ +L  +    R + ++ L
Sbjct: 397 WQRFELYRIQLAEIEQQLEQAAANIARAPEDEQLMDLFE-KLRDLDKQRENQRQKYLSLL 455

Query: 209 -------SSLIMEYVQKENFPHIKLSLTGFLDG-KFDQSFCALKEEYAKKLFDGR----- 255
                     +    Q +       S  GF    K  Q    L + Y+  L   R     
Sbjct: 456 EDAKRVKQQQLDCVRQVQKLHDAARSQHGFSSAFKNAQETINLLDRYSDVLTQARVKTLS 515

Query: 256 -----------KMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
                      + + M     I P   D+ ++D     I     S GE+++  + I    
Sbjct: 516 ANFEVAYRKLARKEDMQLSAHINPETFDVELIDEKGSVINRKLLSAGEKQIYAIAI---- 571

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
              ++ T+G    +++D     LD   R+ L          Q+ +  TD  V
Sbjct: 572 LEALAKTSGRDLPVIIDTPLGRLDSQHRDKLINHYFPFASHQVVLLSTDTEV 623



 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 94/301 (31%), Gaps = 42/301 (13%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPG 53
           + IK L +  FR +  +  +    +            +F G NG GKT+IL AI     G
Sbjct: 1   MLIKQLVLHNFRVFNGTHTIDLAPRKRPHEVNPRPIVLFGGLNGAGKTSILSAIRLALYG 60

Query: 54  RGFRRASYAD---------VTRIG-------SPSFFSTFARVEGMEGLADISIKLETRDD 97
           R     +            +   G         +              ++ ++    +  
Sbjct: 61  RLAFGLATQQQDYIEHLSSLIHKGAYYIEQPEEAAVELTFTYNKGGQESEFTVTRTWKKG 120

Query: 98  RSVR-CLQINDVVIRVVDELNKHLRISWLVPSMD-----RIFSGLSMERRRFLDRMVFAI 151
           +  R  LQ +   +  +D    + +    +  +       +F     +     +     I
Sbjct: 121 KKDRLSLQKDGQPLSELD----YDQCQGFLNELIPHGIADLFFFDGEKIAELAEDESGNI 176

Query: 152 DPRHRRRMIDFERLMRGRNRLLTE-GYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
                RR++  + + + RN L+       SS  +  + Q  E+  K +        AL  
Sbjct: 177 LRTAVRRLLGLDLISKLRNDLMIFVKRQQSSQLAETQQQQIEVLEKQSRDLACQTEALLE 236

Query: 211 LIMEYVQKENFPHIK-LSLTGFL---DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
                  +  F     +   G L    G F Q+    K++    L D  +++   R+   
Sbjct: 237 KADFAKSRIEFLSKDIIRYEGLLNAQGGAFAQTKAQEKQKVETLLKDKERLEKALRQECD 296

Query: 267 G 267
           G
Sbjct: 297 G 297


>gi|283786307|ref|YP_003366172.1| hypothetical protein ROD_26321 [Citrobacter rodentium ICC168]
 gi|282949761|emb|CBG89380.1| hypothetical prophage protein [Citrobacter rodentium ICC168]
          Length = 595

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 8/106 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYADV 64
           K+K +N+ +FR   ++ + F ++ T+  G NG  K+ IL  I+   S  +   +    D+
Sbjct: 25  KLKKINVVKFRGLKNINIEFGSRLTVICGKNGTSKSTILGIIAQIFSFTKDLSKNPEVDL 84

Query: 65  TRIGS------PSFFSTFARV-EGMEGLADISIKLETRDDRSVRCL 103
           T+  +       S FS   R+ E  +    + +++   D  S + L
Sbjct: 85  TQYKTLTNGTFKSAFSEHFRLSEQFDTAGSMEVRISVYDGASNKHL 130


>gi|153871512|ref|ZP_02000665.1| ATPase [Beggiatoa sp. PS]
 gi|152072020|gb|EDN69333.1| ATPase [Beggiatoa sp. PS]
          Length = 106

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 5  IKIKFLNISEFRNY-ASLRLVF--DAQH----TIFVGDNGVGKTNILEAISFL 50
          +KIK + +  ++ +  S    F          T+ VG+NG GK++IL+AI  L
Sbjct: 1  MKIKQITLQNYKRFVQSKTFSFTDSDGIVNEKTLIVGNNGTGKSSILQAIVIL 53


>gi|332710839|ref|ZP_08430776.1| putative ATPase [Lyngbya majuscula 3L]
 gi|332350392|gb|EGJ29995.1| putative ATPase [Lyngbya majuscula 3L]
          Length = 394

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE 45
          +KI  + I  +R + +L +       + VG NG GK+ + +
Sbjct: 1  MKILSIKIKNYRVFENLEIKNIPAFFVIVGANGTGKSTLFD 41


>gi|329846729|ref|ZP_08262002.1| recF/RecN/SMC N terminal domain protein [Asticcacaulis biprosthecum
           C19]
 gi|328844236|gb|EGF93804.1| recF/RecN/SMC N terminal domain protein [Asticcacaulis biprosthecum
           C19]
          Length = 1057

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 23/129 (17%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFD--AQHTIFVGDNGVGKTNILEAISFLSPGR-GF--- 56
           + I I  + + EFRN+  L +         I  G NG+GK+++ + + +   G       
Sbjct: 29  SSIYISQIQLKEFRNFGDLTIDLPAAPGVMIVHGTNGLGKSSLFDGLEWALTGEIDHFNE 88

Query: 57  --RRASYAD-VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV- 112
             + A   D + R  +P+                  I L   D  S+R +  N + ++  
Sbjct: 89  WKKGAKPKDYLRRWDAPA-------------QNPTEISLAFSDGNSLRRILPNTLDVKAG 135

Query: 113 VDELNKHLR 121
           +D++   LR
Sbjct: 136 IDDVTGFLR 144


>gi|312877256|ref|ZP_07737224.1| SMC domain protein [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795970|gb|EFR12331.1| SMC domain protein [Caldicellulosiruptor lactoaceticus 6A]
          Length = 369

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 5   IKIKFLNISEFRNYASL--RLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFR--RA 59
           ++  FL I  F++Y      + F   +    +G NG GK++I EAI++   G   R    
Sbjct: 1   MRPLFLRIENFKSYKDTQNEIDFSNIKVACIIGKNGNGKSSIAEAIAWALFGEFERLQTG 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
               V      +    + +VE    L     K+  R DR  +      + +R  D L 
Sbjct: 61  KRGKVAETEYINSHRDYMQVEFEFELNKTIYKVVRRLDRKGKKYL--SLFVRKADSLI 116


>gi|157147693|ref|YP_001455012.1| hypothetical protein CKO_03496 [Citrobacter koseri ATCC BAA-895]
 gi|157084898|gb|ABV14576.1| hypothetical protein CKO_03496 [Citrobacter koseri ATCC BAA-895]
          Length = 665

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 68/175 (38%), Gaps = 13/175 (7%)

Query: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS----FC 241
           ++A+ A L   +   R +    L   I   V  EN     LS+   LD    +       
Sbjct: 453 LDAKTA-LTEALECTREQ--QKLHDAIKNKVALENASDYALSILPLLDEYAKKLTQKRIS 509

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIF 300
            +++E+++      + D +  R  I  +  ++ +   D  I   +  S GE+++  V + 
Sbjct: 510 EVEQEFSRVYKKLARKDELKLRAKIDVNTFNVNLQDEDGLIIDRSLLSAGEKQIYAVTM- 568

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGTDKSV 354
                 + N +G    +++D     LD   R+ L    + D   Q+ +  TD  +
Sbjct: 569 ---LEALGNVSGKLLPIIIDTPLGRLDSHHRDKLVEHYIPDASHQVIILSTDTEI 620



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 5  IKIKFLNISEFRNYASLRL-------VFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + I  L +  FR +    +              +  G NG GKT+IL AI     G
Sbjct: 1  MIITKLVMRNFRVFRGEHVLDLAPNDEPGKPLILIGGLNGSGKTSILTAIRLALYG 56


>gi|170744724|ref|YP_001773379.1| DNA repair protein RecN [Methylobacterium sp. 4-46]
 gi|168198998|gb|ACA20945.1| DNA repair protein RecN [Methylobacterium sp. 4-46]
          Length = 557

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 69/216 (31%), Gaps = 43/216 (19%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++ I+ + + +      L L F    ++  G+ G GK+ +L+A +    GRG     
Sbjct: 1   MLVQLAIRDIVLID-----KLELNFRDGLSVLTGETGAGKSILLDAFTLALGGRG----- 50

Query: 61  YADVTRIGS-------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
              + R G                     A    ++   D+ ++     D   R   +ND
Sbjct: 51  DGRLVRHGEAQGQVTAVFDVPLDHPARAIAAASDLDTEGDLVLRRVQVADGRTRAF-VND 109

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
             + V         +  +    D          R  LD             + + +  + 
Sbjct: 110 QPVGVQVLRAIGAALVEIHGQHDDRALADPTTHRAILDA---------FGNLQERQAAVA 160

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
             +R + +            A++AE  V++  AR E
Sbjct: 161 EASRGVRQAR----------ARLAEHRVRVEAARKE 186


>gi|167766568|ref|ZP_02438621.1| hypothetical protein CLOSS21_01074 [Clostridium sp. SS2/1]
 gi|167711691|gb|EDS22270.1| hypothetical protein CLOSS21_01074 [Clostridium sp. SS2/1]
 gi|291558604|emb|CBL37404.1| DNA replication and repair protein RecN [butyrate-producing
           bacterium SSC/2]
          Length = 560

 Score = 44.5 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 75/223 (33%), Gaps = 33/223 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L +        L + FD    I  G+ G GK+ ++ +I   + G+      
Sbjct: 1   MLQNLHVKNLALIN-----ELEITFDEHLNILTGETGAGKSVLIGSIE-SALGK----KI 50

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADIS-IKLETRDDRSVRCLQINDVVIRVVDELNK 118
             D+ R G+  +       +E  + + +I  + LE  D +      IN+           
Sbjct: 51  SKDMIRPGAKEAVIELLFWIEDQKLIKEIEALDLEVEDGQIFIKRVINEK---------- 100

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
             R    +       + L    RR  D         H+  + +   L    + L     +
Sbjct: 101 --RSINKINDSTVTLNTLREVSRRLFDLHGQQ---EHQVLLKEKNHLSMMDHFLPENARY 155

Query: 179 DSSWCSSIEAQMAELGVKI------NIARVEMINALSSLIMEY 215
               C ++  +  E+  KI      +  R+  ++ L   I E 
Sbjct: 156 SLEQCKNLAGEYHEISTKIKEISIDDQQRLREMDFLKHEISEI 198


>gi|329964793|ref|ZP_08301816.1| exonuclease SbcCD, C subunit [Bacteroides fluxus YIT 12057]
 gi|328524644|gb|EGF51707.1| exonuclease SbcCD, C subunit [Bacteroides fluxus YIT 12057]
          Length = 1139

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT------IFVGDNGVGKTNILEAISF 49
          +K++ L +    +     + F+          +  G+ G GKT IL+AI  
Sbjct: 1  MKLQKLTLKNLASIEDAVIDFENGPLSEESLFLICGETGAGKTTILDAICL 51


>gi|330038514|ref|XP_003239618.1| structural maintenance of chromosomes 1 [Cryptomonas paramecium]
 gi|327206542|gb|AEA38720.1| structural maintenance of chromosomes 1 [Cryptomonas paramecium]
          Length = 1059

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 6  KIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS 51
          KI+F+ I  F++Y                G NG GKTN++EA  F+ 
Sbjct: 11 KIQFIKIHNFKSYKKSSFFDTFETTGWITGKNGTGKTNLIEAFIFVC 57


>gi|297271051|ref|XP_001090492.2| PREDICTED: structural maintenance of chromosomes protein 5 [Macaca
           mulatta]
          Length = 1166

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
           I  +++  F  Y    +       + +G NG GK++I+ AI     G+
Sbjct: 153 IVRISMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGK 200


>gi|169797420|ref|YP_001715213.1| protein used in recombination and DNA repair [Acinetobacter
           baumannii AYE]
 gi|213155766|ref|YP_002317811.1| DNA repair protein RecN [Acinetobacter baumannii AB0057]
 gi|301345139|ref|ZP_07225880.1| DNA repair protein RecN [Acinetobacter baumannii AB056]
 gi|301510700|ref|ZP_07235937.1| DNA repair protein RecN [Acinetobacter baumannii AB058]
 gi|301594960|ref|ZP_07239968.1| DNA repair protein RecN [Acinetobacter baumannii AB059]
 gi|169150347|emb|CAM88244.1| protein used in recombination and DNA repair [Acinetobacter
           baumannii AYE]
 gi|213054926|gb|ACJ39828.1| DNA repair protein RecN [Acinetobacter baumannii AB0057]
          Length = 555

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 24/184 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVR-CLQINDVV--IR 111
            GS     T                E         I L      + R    +N     + 
Sbjct: 57  YGSDKADVTAVFTYQDNSPEAKWLKEHELDDDSGEIHLRRVIFATGRSKAWVNGRPSSLS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRGR 169
            + EL + L   +   S  ++        + +LDR    +A     R     ++R +R  
Sbjct: 117 ELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDRYSNFYAEANDVREAYSTWQRNIRQH 174

Query: 170 NRLL 173
              L
Sbjct: 175 QAAL 178


>gi|329663956|ref|NP_001098796.2| structural maintenance of chromosomes protein 4 [Bos taurus]
          Length = 1288

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R
Sbjct: 79  APRLMITHIVNQNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIR 138

Query: 58  RASYADVTRIGSPSF 72
               + +    S   
Sbjct: 139 SKKLSVLI-HNSDEH 152


>gi|157962905|ref|YP_001502939.1| ATP-dependent OLD family endonuclease [Shewanella pealeana ATCC
          700345]
 gi|157847905|gb|ABV88404.1| ATP-dependent endonuclease of the OLD family [Shewanella pealeana
          ATCC 700345]
          Length = 605

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +KI  + I  FR      +  +   T  VG N +GK+ IL A++ 
Sbjct: 1  MKINKVEIENFRGITEAVIDLN-NFTTLVGPNNIGKSTILAALNL 44


>gi|299067451|emb|CBJ38650.1| Chromosome segregation protein SMC [Ralstonia solanacearum CMR15]
          Length = 1171

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           +++  + ++ F+++          Q    VG NG GK+NI++A+   L   R    R  S
Sbjct: 1   MRLSSIKLAGFKSFVEPTNFHVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRAAELRGES 60

Query: 61  YADVTRIGS--------PSFFSTFARVEGM-----EGLADISIKLETRDDRSVRCLQIND 107
             DV   GS         S    F   EG         A+I++K     D +     IN+
Sbjct: 61  MQDVIFNGSTQRKPAGRASVELVFDNAEGRAAGQWSQYAEIAVKRVLSRDGTS-SYFINN 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 QAVRRRD 126



 Score = 36.4 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 12/166 (7%)

Query: 188  AQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKE 245
            A + EL       R   ++A S+ +++ +   ++    I       L G FDQ      E
Sbjct: 973  AALDELAAA--RERKGFLDAQSADLLDAITTLEDAIRKIDQETRALLQGTFDQVNHHFGE 1030

Query: 246  EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             +      G+    M+   ++      +      K  TI   S GE+ +  + +  A  +
Sbjct: 1031 LFPTLFGGGQAKLIMTGEEILDAGVQVMAQPPGKKNSTIHLLSGGEKALTAIALVFAMFQ 1090

Query: 306  LISNTTGFAPILLLDEISAHLDEDKRNA---LFRIVTDIGSQIFMT 348
            L       AP  LLDE+ A LD+        + + ++D    +F++
Sbjct: 1091 L-----NPAPFCLLDEVDAPLDDANTERYANMVKRMSDKTQFVFIS 1131


>gi|116070642|ref|ZP_01467911.1| ATPase [Synechococcus sp. BL107]
 gi|116066047|gb|EAU71804.1| ATPase [Synechococcus sp. BL107]
          Length = 212

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 18/132 (13%)

Query: 251 LFDGRKMDSMSRRTLIGPHRSD-----LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           L      +       +G  R D     + +    +       S G+Q+ + + + L    
Sbjct: 88  LGLNVSQELRLGHRRLGSDRQDQVLQRVGLKDIPRNTAPERLSGGQQRRLALAVQL---- 143

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGT-DKSVFDSLNETAK 363
                   A +LLLDE +A LD   R+ +  +++++   Q+ +  T +  +F   +    
Sbjct: 144 -----LRGAEVLLLDEPTAGLDWSVRSDVLTLLSNLAQEQVLIVVTHEPELFHQWDSDQ- 197

Query: 364 FMRISNHQALCI 375
            +R+ + Q   +
Sbjct: 198 -LRLESGQLTSM 208


>gi|91084903|ref|XP_969783.1| PREDICTED: similar to RAD50 homolog [Tribolium castaneum]
 gi|270009233|gb|EFA05681.1| rad50 [Tribolium castaneum]
          Length = 1309

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 7  IKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++ L IS  R++         + F    T+ +G NG GKT I+EAI ++   
Sbjct: 4  LERLQISGVRSFGPNEEHCQTIKFATPLTLILGQNGSGKTTIIEAIKYVCTA 55



 Score = 36.0 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 14/99 (14%)

Query: 284  IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---- 339
                S G++ +  + I +A A  +S   G   IL LDE + +LD +   +L   +     
Sbjct: 1202 RGRCSAGQKVLACLIIRMALAETLSANCG---ILALDEPTTNLDRENIFSLCEALARIVE 1258

Query: 340  ----DIGSQIFMTGTDKSVFDSL---NETAKFMRISNHQ 371
                +   Q+ +   D+   ++L        F R+S +Q
Sbjct: 1259 SRQKEKNFQLVVITHDEEFINALTRAQGVPFFYRVSRNQ 1297


>gi|304321379|ref|YP_003855022.1| putative DNA repair protein RecN [Parvularcula bermudensis
           HTCC2503]
 gi|303300281|gb|ADM09880.1| putative DNA repair protein RecN [Parvularcula bermudensis
           HTCC2503]
          Length = 564

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 84/254 (33%), Gaps = 24/254 (9%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + ++ + +      A LRL   A  T   G+ G GK+ +L+++   + G+     +
Sbjct: 1   MLVNLHVQDIVL-----IAQLRLSIGAGLTALTGETGAGKSILLDSLGLATGGK-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLE--TRDDRSVRCLQINDVVIRVVDELNK 118
              + R G+                   +++    + +D ++   +I     +    +N 
Sbjct: 51  DRSLVRHGAERGIVAATFDVDRRHEVWAALEEGGLSTEDDTITLRRIQYADGKSRAFIND 110

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDF---ERLMRGRNRLLTE 175
                 L     R   G  +E       + F  +  HR+ +  F   E  +R        
Sbjct: 111 QPCSVGL----LRAVGGRLIEIHGQHQALGFLDERAHRQLLDHFGGHEEALRAVQSADAA 166

Query: 176 GYFDSSWCSS---IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
                +   +    + ++ E    +     E ++AL+    E  Q        L     +
Sbjct: 167 HRAAIASLDAAMSADRRLHEEADYLRHM-AEELSALAPQAGEEAQLAER-RAVLMAAEKI 224

Query: 233 DGKFDQSFCALKEE 246
               D++   L+E+
Sbjct: 225 GADLDEAAHLLEED 238


>gi|300856184|ref|YP_003781168.1| hypothetical protein CLJU_c30180 [Clostridium ljungdahlii DSM
          13528]
 gi|300436299|gb|ADK16066.1| conserved hypothetical protein [Clostridium ljungdahlii DSM
          13528]
          Length = 688

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          + +K L +  FR +      + F+   T  +G+N  GKT +L+A+  L         +  
Sbjct: 1  MNLKKLRLCRFRCFGDDEQEIYFN-NLTTLIGNNSCGKTTVLQALLKLFSYNS----NER 55

Query: 63 DVTRIG 68
          ++ R  
Sbjct: 56 NLIRSD 61


>gi|218246302|ref|YP_002371673.1| ABC transport protein, ATP-binding subunit [Cyanothece sp. PCC
          8801]
 gi|257059349|ref|YP_003137237.1| ATPase-like protein [Cyanothece sp. PCC 8802]
 gi|218166780|gb|ACK65517.1| ABC transport protein, ATP-binding subunit [Cyanothece sp. PCC
          8801]
 gi|256589515|gb|ACV00402.1| ATPase-like protein [Cyanothece sp. PCC 8802]
          Length = 382

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + + +++  FR    + L       + +G NG GKT+ L+ +S L+
Sbjct: 3  RFENISVRGFRRLRQVDLEMRD-LIVMIGANGAGKTSFLDVLSILA 47


>gi|114565773|ref|YP_752927.1| hypothetical protein Swol_0204 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336708|gb|ABI67556.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 394

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 44/373 (11%), Positives = 110/373 (29%), Gaps = 48/373 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG-------FR 57
           ++I+ +    F+      +       IF+G NG GK+   +   FL             +
Sbjct: 1   MRIESIRTKNFKILKDTTIRNIPAMAIFLGANGSGKSTFFDIFGFLHDCLTDNVRAALLK 60

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           R  + +V   G         +     G   ++ +L    D     +   +++     +  
Sbjct: 61  RGGFKEVVSRGQSGPIEFEIKFRSAPGEPLVTYELHINLDDKGLPIVSKELLKYRRGQKG 120

Query: 118 KHLRISWLVPSMDRIF-----SGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           +          +          G    +     + + + D    + +  F++        
Sbjct: 121 RPWHFLDFSNGVGHAIVNESEYGKPGVQEAREQQTLDSPDILAIKGLGQFQKY------- 173

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
             +                     ++  R+E   + +             ++ L +T F+
Sbjct: 174 -KQIASFRRLIEGW---------HVSDFRIESARSTNDAGYAEHLSATGDNLAL-VTQFM 222

Query: 233 DGKFDQSFCALKEEYAKK---LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
              +   F  + E+ A++   +      ++   R ++     +             + S 
Sbjct: 223 HEHYSDRFQQVLEKIAQRVPGIKSVEAKETADGRIVLRFQNEEFK-----DPFISRYVSD 277

Query: 290 GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV---TDIGSQIF 346
           G  K+       A+  L+ + T   P+L ++E    L  D    L          G Q+F
Sbjct: 278 GTLKMF------AYLILLYDPT-PHPLLCIEEPENQLHPDLLLELAEEFRAYASNGGQVF 330

Query: 347 MTGTDKSVFDSLN 359
           ++       +++ 
Sbjct: 331 ISTHSPDFVNAVQ 343


>gi|313159323|gb|EFR58687.1| conserved hypothetical protein [Alistipes sp. HGB5]
          Length = 177

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 14/62 (22%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS------PGRGFR---RASYA 62
          ++ FR     RL F    T  +G+NG+GK+ +LEAI+  +        + FR   RAS++
Sbjct: 32 LANFR-----RLEFRRPVTFIMGENGMGKSTLLEAIAVKAGFNPEGGSKNFRFATRASHS 86

Query: 63 DV 64
          D+
Sbjct: 87 DL 88


>gi|294637629|ref|ZP_06715908.1| DNA repair protein RecN [Edwardsiella tarda ATCC 23685]
 gi|291089184|gb|EFE21745.1| DNA repair protein RecN [Edwardsiella tarda ATCC 23685]
          Length = 553

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 79/265 (29%), Gaps = 42/265 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A++    GR       A + R
Sbjct: 2   LTQLTISNFAIVRELEIDFQRGMTAITGETGAGKSIAIDALTLCLGGRS-----EAAMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +  P              S  A +E  +        L        R    IN   V +  
Sbjct: 57  MNMPRADICARFSLADTPSARAWLEENQLDDSNECLLRRVISADGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + +L + L       +   +       +R  LD                 + L++     
Sbjct: 117 LRDLGQLLIQIHGQHAHQLLLK--PEHQRHLLD------------AYGQQQTLLQEMRAA 162

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGF 231
             + +      +    Q++E       AR E++      + E+  Q   F  I       
Sbjct: 163 YRQWHHSVRLLADHRRQVSE-----REARRELLQYQLKELNEFAPQLGEFEQIDEEYKRQ 217

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRK 256
            +        +L ++    L DG  
Sbjct: 218 ANSG---QLLSLSQQILAALADGED 239


>gi|46580867|ref|YP_011675.1| DNA repair protein RecN [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601826|ref|YP_966226.1| SMC domain-containing protein [Desulfovibrio vulgaris DP4]
 gi|46450287|gb|AAS96935.1| DNA repair protein RecN [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562055|gb|ABM27799.1| DNA replication and repair protein RecN [Desulfovibrio vulgaris
           DP4]
 gi|311234563|gb|ADP87417.1| SMC domain protein [Desulfovibrio vulgaris RCH1]
          Length = 539

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 23/195 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L +        + L F     +  G+ G GK+ IL+A++FL+  R      
Sbjct: 1   MLEYLRIRDLAL-----IEDMELEFSNGLNVLTGETGAGKSFILKALNFLTGDR-----L 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADIS--IKLETRDDRSVRCLQINDVVIRVVDELNK 118
            AD+ R G        A+VE +  L D    ++ E         L IND +       + 
Sbjct: 51  GADMVRPG-----RDKAQVEALFMLPDGECIMRRELVAATGRSRLFINDALSSQDAARDL 105

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRR----MIDFERLMRGRNRLLT 174
              +        +        + + LD   +   P    R    +     +   R  LL 
Sbjct: 106 RPSLIVHTSQHGQHKLLQPSFQAQLLD--TYLQRPDLLERREATLRQLRDVAAQREALLE 163

Query: 175 EGYFDSSWCSSIEAQ 189
                      +E Q
Sbjct: 164 RSRTLEEKRDVLEYQ 178


>gi|70946900|ref|XP_743118.1| DNA repair protein RAD50 [Plasmodium chabaudi chabaudi]
 gi|56522461|emb|CAH80533.1| DNA repair protein RAD50, putative [Plasmodium chabaudi chabaudi]
          Length = 346

 Score = 44.1 bits (103), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYAS---LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  + I   R+Y      +L F +  TI  G+NG GK+ I+E +     G
Sbjct: 4  LDKIGIQGIRSYCDEYAQQLEFSSPITIIYGNNGSGKSTIIECLKVNCTG 53


>gi|291562665|emb|CBL41481.1| DNA replication and repair protein RecN [butyrate-producing
           bacterium SS3/4]
          Length = 563

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/126 (14%), Positives = 43/126 (34%), Gaps = 22/126 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L +          + F     I  G+ G GK+ I+ +++     +  R   
Sbjct: 1   MLVGLHVKNLAL-----IEQADVEFGNGLNILTGETGAGKSIIIGSVALALGAKASR--- 52

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLADIS-----------IKLETRDDRSVRCLQINDV 108
             D+ R G   ++      V+  +   ++            + +  +  ++    +IND 
Sbjct: 53  --DMIRCGEEYAYIELIFSVDDEKKREELKKMDVYPDEDGLLIISKKITQTRSISRINDE 110

Query: 109 VIRVVD 114
            +    
Sbjct: 111 TVTTAR 116


>gi|190341627|gb|ACE74890.1| RecN [Cronobacter malonaticus]
          Length = 553

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     +   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSNGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       ++R LD         +     +    M    R
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD--------GYAGE-GELMAQMAQSYR 164

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              +   D +       + A    ++   +++ +N  +    E+ ++ +  + +L+ +G 
Sbjct: 165 QWHQSCRDLALHQQQSQERA-ARAELLHYQLKELNEFNPQPGEF-EQIDEEYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
           L     Q+   L +     L             L+G
Sbjct: 223 LLSTSQQALNLLADAEDANLQSQLYSARNLVTDLVG 258


>gi|221195855|ref|ZP_03568908.1| DNA repair protein RecN [Atopobium rimae ATCC 49626]
 gi|221184329|gb|EEE16723.1| DNA repair protein RecN [Atopobium rimae ATCC 49626]
          Length = 547

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 32/101 (31%), Gaps = 6/101 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L +          LV     T+  G+ G GKT +L AI  L   RG          R
Sbjct: 2   IDELFVQNVALIEEASLVPAKGLTVLTGETGAGKTALLSAIKLLIGERG-----DVTAIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
            GS              G     ++     D   R ++I+ 
Sbjct: 57  EGSDELHVEARFFLADSGEEGTIVRRRMNTDGRGR-VEIDG 96


>gi|187929956|ref|YP_001900443.1| DNA repair protein RecN [Ralstonia pickettii 12J]
 gi|187726846|gb|ACD28011.1| DNA repair protein RecN [Ralstonia pickettii 12J]
          Length = 568

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 16/115 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F    +L L      T+F G+ G GK+ +++A   L+   G R  + A V R
Sbjct: 2   LRSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDA---LALTLGER--ADAAVVR 56

Query: 67  IGSPSFFS---------TFARVEGMEGLADISIKLETR--DDRSVRCLQINDVVI 110
            G+P               A +E  E   D  + L  R  D        IN   +
Sbjct: 57  EGAPRADITAEFDVHPHVAAWLEAHELHDDEGVILLRRTVDAAGRSKAFINGAAV 111


>gi|167740054|ref|ZP_02412828.1| DNA repair protein RecN [Burkholderia pseudomallei 14]
          Length = 107

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2  LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67 IGS 69
           GS
Sbjct: 57 TGS 59


>gi|76808604|ref|YP_334700.1| DNA repair protein RecN [Burkholderia pseudomallei 1710b]
 gi|167825680|ref|ZP_02457151.1| DNA repair protein RecN [Burkholderia pseudomallei 9]
 gi|167912401|ref|ZP_02499492.1| DNA repair protein RecN [Burkholderia pseudomallei 112]
 gi|226194310|ref|ZP_03789909.1| DNA repair protein RecN [Burkholderia pseudomallei Pakistan 9]
 gi|254191587|ref|ZP_04898090.1| DNA repair protein RecN [Burkholderia pseudomallei Pasteur 52237]
 gi|254260346|ref|ZP_04951400.1| DNA repair protein RecN [Burkholderia pseudomallei 1710a]
 gi|76578057|gb|ABA47532.1| DNA repair protein RecN [Burkholderia pseudomallei 1710b]
 gi|157939258|gb|EDO94928.1| DNA repair protein RecN [Burkholderia pseudomallei Pasteur 52237]
 gi|225933775|gb|EEH29763.1| DNA repair protein RecN [Burkholderia pseudomallei Pakistan 9]
 gi|254219035|gb|EET08419.1| DNA repair protein RecN [Burkholderia pseudomallei 1710a]
          Length = 549

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2  LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67 IGS 69
           GS
Sbjct: 57 TGS 59


>gi|254180752|ref|ZP_04887350.1| DNA repair protein RecN [Burkholderia pseudomallei 1655]
 gi|184211291|gb|EDU08334.1| DNA repair protein RecN [Burkholderia pseudomallei 1655]
          Length = 549

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2  LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67 IGS 69
           GS
Sbjct: 57 TGS 59


>gi|53726219|ref|YP_103892.1| DNA repair protein RecN [Burkholderia mallei ATCC 23344]
 gi|67642158|ref|ZP_00440919.1| DNA repair protein RecN [Burkholderia mallei GB8 horse 4]
 gi|121600457|ref|YP_991841.1| DNA repair protein RecN [Burkholderia mallei SAVP1]
 gi|124383475|ref|YP_001027092.1| DNA repair protein RecN [Burkholderia mallei NCTC 10229]
 gi|126439090|ref|YP_001060297.1| DNA repair protein RecN [Burkholderia pseudomallei 668]
 gi|126449391|ref|YP_001081743.1| DNA repair protein RecN [Burkholderia mallei NCTC 10247]
 gi|126455415|ref|YP_001067556.1| DNA repair protein RecN [Burkholderia pseudomallei 1106a]
 gi|134280596|ref|ZP_01767307.1| DNA repair protein RecN [Burkholderia pseudomallei 305]
 gi|167721081|ref|ZP_02404317.1| DNA repair protein RecN [Burkholderia pseudomallei DM98]
 gi|167847168|ref|ZP_02472676.1| DNA repair protein RecN [Burkholderia pseudomallei B7210]
 gi|167895751|ref|ZP_02483153.1| DNA repair protein RecN [Burkholderia pseudomallei 7894]
 gi|167904142|ref|ZP_02491347.1| DNA repair protein RecN [Burkholderia pseudomallei NCTC 13177]
 gi|167920355|ref|ZP_02507446.1| DNA repair protein RecN [Burkholderia pseudomallei BCC215]
 gi|217421075|ref|ZP_03452580.1| DNA repair protein RecN [Burkholderia pseudomallei 576]
 gi|242314472|ref|ZP_04813488.1| DNA repair protein RecN [Burkholderia pseudomallei 1106b]
 gi|254178750|ref|ZP_04885404.1| DNA repair protein RecN [Burkholderia mallei ATCC 10399]
 gi|254202603|ref|ZP_04908966.1| DNA repair protein RecN [Burkholderia mallei FMH]
 gi|254207941|ref|ZP_04914291.1| DNA repair protein RecN [Burkholderia mallei JHU]
 gi|254355919|ref|ZP_04972197.1| DNA repair protein RecN [Burkholderia mallei 2002721280]
 gi|52429642|gb|AAU50235.1| DNA repair protein RecN [Burkholderia mallei ATCC 23344]
 gi|121229267|gb|ABM51785.1| DNA repair protein RecN [Burkholderia mallei SAVP1]
 gi|124291495|gb|ABN00764.1| DNA repair protein RecN [Burkholderia mallei NCTC 10229]
 gi|126218583|gb|ABN82089.1| DNA repair protein RecN [Burkholderia pseudomallei 668]
 gi|126229057|gb|ABN92597.1| DNA repair protein RecN [Burkholderia pseudomallei 1106a]
 gi|126242261|gb|ABO05354.1| DNA repair protein RecN [Burkholderia mallei NCTC 10247]
 gi|134248603|gb|EBA48686.1| DNA repair protein RecN [Burkholderia pseudomallei 305]
 gi|147746850|gb|EDK53927.1| DNA repair protein RecN [Burkholderia mallei FMH]
 gi|147751835|gb|EDK58902.1| DNA repair protein RecN [Burkholderia mallei JHU]
 gi|148024894|gb|EDK83072.1| DNA repair protein RecN [Burkholderia mallei 2002721280]
 gi|160694664|gb|EDP84672.1| DNA repair protein RecN [Burkholderia mallei ATCC 10399]
 gi|217396487|gb|EEC36504.1| DNA repair protein RecN [Burkholderia pseudomallei 576]
 gi|238523252|gb|EEP86692.1| DNA repair protein RecN [Burkholderia mallei GB8 horse 4]
 gi|242137711|gb|EES24113.1| DNA repair protein RecN [Burkholderia pseudomallei 1106b]
          Length = 549

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2  LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67 IGS 69
           GS
Sbjct: 57 TGS 59


>gi|237739242|ref|ZP_04569723.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
 gi|229422850|gb|EEO37897.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
          Length = 441

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTI------FVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           ++ +  +++   L +    +           G+NGVGK+N +++   L      R  + 
Sbjct: 3  TYIKLKNYKSLIELEVDLTKKENTPKKLISIYGENGVGKSNFVDSFYTLKRIVSTRTINE 62

Query: 62 ADVTRI 67
              RI
Sbjct: 63 K--IRI 66


>gi|254410800|ref|ZP_05024578.1| hypothetical protein MC7420_278 [Microcoleus chthonoplastes PCC
           7420]
 gi|196182155|gb|EDX77141.1| hypothetical protein MC7420_278 [Microcoleus chthonoplastes PCC
           7420]
          Length = 363

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 125/356 (35%), Gaps = 45/356 (12%)

Query: 5   IKIKFLNISE----FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           ++I  +++++    F N+  + L  + + TI  G NGVGKT +L+ I  +     +   S
Sbjct: 1   MRINQISVTDLFGVF-NHV-IPLNLEDRITIIYGKNGVGKTKLLKLIYEICSSVCYETPS 58

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
                  G           +  E L     K+E   +        +++ +  +  +   +
Sbjct: 59  ----INFGQ-----LTLSFDNNETLKVDGRKIEDSPEG-------HELFLDQISSIYSKI 102

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDR-MVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
            +  +     R+    +  R +  +R  +      + + +    +        L++    
Sbjct: 103 NVRLI--EDTRLLYSTANNRTQHYNRQSMLQTVSNYAQELAKNIQAKITEYGTLSQSLDR 160

Query: 180 SSWCSSIEAQ-MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
           +     ++ Q M +L  +    ++  +    S +++Y       +  + L   +D    +
Sbjct: 161 TFPARVVQQQAMPKLDDESLKNKLNNLEKRRSELIDYGLLIQDNNQDIKLQEDIDESTKK 220

Query: 239 SFCALKEEYAKKLFD----GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG------- 287
                 E+  KKL       RK+D ++R      +   + ++          G       
Sbjct: 221 ILAVYIEDAEKKLSLFDDIARKIDLLTRIINNKFNYKHMKINKNGGFNFATDGGKLLHPT 280

Query: 288 --STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI 341
             S+GEQ  +++        L+        ++L+DE    L  + +    + + +I
Sbjct: 281 KLSSGEQHELVL-----LYELLFKVE-PNSLILIDEPELSLHVEWQVQFLKDLQEI 330


>gi|167647762|ref|YP_001685425.1| SMC domain-containing protein [Caulobacter sp. K31]
 gi|167350192|gb|ABZ72927.1| SMC domain protein [Caulobacter sp. K31]
          Length = 682

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +++ F+ I  FR +  L R+ F    T+  G NGVGK+ + +A+ F   G
Sbjct: 1  MRLDFIEICGFRGFRDLVRINFGRGFTVITGRNGVGKSTLCDAVEFAIIG 50



 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 62/176 (35%), Gaps = 9/176 (5%)

Query: 189 QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
           +M+ +   I   R + I  L++ + +                 +  +      A      
Sbjct: 463 RMSSIESNITALRAD-IEKLANAVSQSQNAVTAAREIERSVRRVSAEIIDERLAQISPLL 521

Query: 249 KKLFDGRKMDSMSR---RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
            +L+   +  +  R    ++ G  R  L +   D        S+G+++   +   L+   
Sbjct: 522 NELYQRLRPHADWRTIDYSIRGDVRRFLSLKVGDGLNPQFVFSSGQRRAAGLAFLLSV-- 579

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQIFMTGTDKSVFDSL 358
            ++        LLLD+   H+D+ +   L  ++  +   G QI     D ++ D L
Sbjct: 580 HLARAWTPLRSLLLDDPVQHIDDFRALHLVEVLAALRLDGRQIICAVEDPALADLL 635


>gi|331002435|ref|ZP_08325953.1| DNA repair protein RecN [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330410251|gb|EGG89685.1| DNA repair protein RecN [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 549

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 13/118 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + IK L +          + F    ++  G+ G GK+ ++++I+     +     +
Sbjct: 1   MLIELHIKNLAL-----IKKADIYFKEGLSVLSGETGAGKSILIDSINLALGAK-----A 50

Query: 61  YADVTRIGSPSFFS--TFARVEGM-EGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
             D+ R G    F    F   E   E L ++ I  E       R +  +  V R+ DE
Sbjct: 51  SKDIIRTGENEGFVELIFTLDEKRKEKLKNLDISFEDDLLIITRKISNSRSVCRINDE 108


>gi|313836434|gb|EFS74148.1| conserved domain protein [Propionibacterium acnes HL037PA2]
 gi|314929047|gb|EFS92878.1| conserved domain protein [Propionibacterium acnes HL044PA1]
 gi|314971007|gb|EFT15105.1| conserved domain protein [Propionibacterium acnes HL037PA3]
 gi|328906669|gb|EGG26444.1| LOW QUALITY PROTEIN: putative ATPase involved in DNA repair
          [Propionibacterium sp. P08]
          Length = 390

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  +++  F+      L   D    I  G N +GKT+++E +  L      + +S + 
Sbjct: 1  MKLHRIHVENFKAIDERTLELPDRGIVIAAGRNEIGKTSMVETLDLLLDTGT-KASSKSR 59

Query: 64 VTRIGSPSFFSTFARVEGM 82
            RI  P   S    +E  
Sbjct: 60 KVRIAQPYGTSRQVVIEAE 78


>gi|239500944|ref|ZP_04660254.1| DNA repair protein RecN [Acinetobacter baumannii AB900]
          Length = 555

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 24/184 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVR-CLQINDVV--IR 111
            GS     T                E         I L      + R    +N     + 
Sbjct: 57  YGSDKADVTAVFTYQDNSPEAKWLKEHELDDDSGEIHLRRVIFATGRSKAWVNGRPSSLS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRGR 169
            + EL + L   +   S  ++        + +LDR    +A     R     ++R +R  
Sbjct: 117 ELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDRYSNFYAEANDVREAYSTWQRNIRQH 174

Query: 170 NRLL 173
              L
Sbjct: 175 QAAL 178


>gi|238619089|ref|YP_002913914.1| hypothetical protein M164_0627 [Sulfolobus islandicus M.16.4]
 gi|238380158|gb|ACR41246.1| conserved hypothetical protein [Sulfolobus islandicus M.16.4]
          Length = 299

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + I  +N+  FR       +   +  I VG+NG GKT+ LE+I   +  + 
Sbjct: 1  MNISEVNVEGFRGLKIATRL--KRINIVVGENGSGKTSFLESIFMSTLFQS 49


>gi|213024315|ref|ZP_03338762.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 169

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            G+      + FA  +    L  +  + +  + R     ++     R    +N 
Sbjct: 57  TGATRADLCARFALKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING 109


>gi|15639433|ref|NP_218882.1| DNA repair protein (recN) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189025674|ref|YP_001933446.1| DNA repair protein [Treponema pallidum subsp. pallidum SS14]
 gi|11134452|sp|O83456|RECN_TREPA RecName: Full=DNA repair protein recN; AltName: Full=Recombination
           protein N
 gi|3322727|gb|AAC65429.1| DNA repair protein (recN) [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018249|gb|ACD70867.1| DNA repair protein [Treponema pallidum subsp. pallidum SS14]
 gi|291059828|gb|ADD72563.1| DNA repair protein RecN [Treponema pallidum subsp. pallidum str.
           Chicago]
          Length = 573

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 77/250 (30%), Gaps = 27/250 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L++       SL L F AQ T   G+ G GK+ IL A+SFL   +        D+ R
Sbjct: 2   IEQLSVRNVALIQSLALEFGAQFTALSGETGAGKSMILGALSFLCGQK-----VGPDLIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                 + + A          +   L  R         +   V+R        ++   + 
Sbjct: 57  KDENEAWVS-AVFRCDHAPRAVHTWLAERSIEPEHHRVLLRRVMRRTGRGTAWIQNVPVS 115

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
            +    F+        F   +    + +   R+ +  R        L           + 
Sbjct: 116 RADLEFFTS-------FFIDLHGQHEHQSLFRVAEHRR-------FLDTYGGLQQEVDAF 161

Query: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246
            A  A L       R   +  L+S   E+ ++E    +  +L        D       E 
Sbjct: 162 TACYAALAE-----RRAQLQRLASC--EHNRQERLEFLSFALEELEHAALDVHEERALEG 214

Query: 247 YAKKLFDGRK 256
             +KL    K
Sbjct: 215 EEQKLCQHEK 224


>gi|238793788|ref|ZP_04637409.1| DNA repair protein recN [Yersinia intermedia ATCC 29909]
 gi|238726852|gb|EEQ18385.1| DNA repair protein recN [Yersinia intermedia ATCC 29909]
          Length = 553

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 46/277 (16%), Positives = 84/277 (30%), Gaps = 34/277 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R         + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAIDALGLCLGSRS-----DGSMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +G+               S    +E           L        R    IN   V +  
Sbjct: 57  LGATRADICARFSLADTPSARQWLEHNHLDDSNECLLRRAIGTDGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD------------RMVFAIDPRHRRRMI 160
           + EL +HL       +   +    +  +++ LD            +  + I  +  R + 
Sbjct: 117 LRELGQHLIQIHGQHAHQLLLR--ADHQKQLLDAYADQPALLSEMKAAYQIWHQSCRALA 174

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMINALSSLIMEYVQKE 219
             ++    RN       +     +S   Q  E   + I   R+     L SL  + +Q  
Sbjct: 175 LHQQQSLERNARKELLQYQLKELNSFAPQAGEYEQIDIEYKRLANSGQLLSLSQQTLQLL 234

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +       L+     K   +  A  +E    L +  +
Sbjct: 235 SDDEQNNILSQLYSAKHQLTELASMDEQFNNLLNMLE 271


>gi|150390274|ref|YP_001320323.1| DNA repair protein RecN [Alkaliphilus metalliredigens QYMF]
 gi|149950136|gb|ABR48664.1| DNA repair protein RecN [Alkaliphilus metalliredigens QYMF]
          Length = 569

 Score = 44.1 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L +S F     L + F+    I  G+ G GK+ I++A++ +   R     +  ++ R
Sbjct: 2  LLELEVSNFALIDQLHIQFENGLNILTGETGAGKSIIIDAVNMVIGAR-----ADRELVR 56

Query: 67 IGS-----PSFFSTFARVEGMEGLADISIKLE 93
           G+        FS   +VE +  L++  + ++
Sbjct: 57 TGANKCTIQGIFSLENKVELVRMLSNYGVDID 88


>gi|323691104|ref|ZP_08105384.1| ATP-dependent OLD family endonuclease [Clostridium symbiosum
          WAL-14673]
 gi|323504801|gb|EGB20583.1| ATP-dependent OLD family endonuclease [Clostridium symbiosum
          WAL-14673]
          Length = 619

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +++  L I  ++    + +       I VG N  GKT++L+AI  +S
Sbjct: 1  MQLVRLRIRNYKVIRDMEICDIENALILVGKNNTGKTSVLDAIRVVS 47


>gi|323483397|ref|ZP_08088785.1| hypothetical protein HMPREF9474_00534 [Clostridium symbiosum
          WAL-14163]
 gi|323403251|gb|EGA95561.1| hypothetical protein HMPREF9474_00534 [Clostridium symbiosum
          WAL-14163]
          Length = 619

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +++  L I  ++    + +       I VG N  GKT++L+AI  +S
Sbjct: 1  MQLVRLRIRNYKVIRDMEICDIENALILVGKNNTGKTSVLDAIRVVS 47


>gi|315056489|ref|XP_003177619.1| DNA repair protein Rad50 [Arthroderma gypseum CBS 118893]
 gi|311339465|gb|EFQ98667.1| DNA repair protein Rad50 [Arthroderma gypseum CBS 118893]
          Length = 1274

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASL---RLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          KI  L+I   R++ +     + F    T+ VG NG GKT I+E + + + G
Sbjct: 8  KIDKLSILGVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 58


>gi|300933602|ref|ZP_07148858.1| hypothetical protein CresD4_05987 [Corynebacterium resistens DSM
           45100]
          Length = 1011

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 2/112 (1%)

Query: 5   IKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++I  L I  F      ++       T+  G N  GK+  +EA   L      R     D
Sbjct: 26  LQIYRLEIWNFAGVEHAKIEPQIPGVTVVHGPNESGKSTFVEAFQLLLNPNYRRDTQAKD 85

Query: 64  VTRIGSPSFFSTF-ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           VT+  S      F    +   G  D++++ E +       L I    +  + 
Sbjct: 86  VTKYKSKGKDLAFTVEADLRLGEYDLTMRKEFKKPGGQSILTIRSPRVENLS 137


>gi|237813687|ref|YP_002898138.1| DNA repair protein RecN [Burkholderia pseudomallei MSHR346]
 gi|237504744|gb|ACQ97062.1| DNA repair protein RecN [Burkholderia pseudomallei MSHR346]
          Length = 549

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2  LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67 IGS 69
           GS
Sbjct: 57 TGS 59


>gi|149917970|ref|ZP_01906464.1| hypothetical protein PPSIR1_37144 [Plesiocystis pacifica SIR-1]
 gi|149821236|gb|EDM80640.1| hypothetical protein PPSIR1_37144 [Plesiocystis pacifica SIR-1]
          Length = 447

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 18 YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           A + L F  +  +  GDNG+GKT +L+ I ++  G
Sbjct: 13 IAEMTLEFGPRLNVLTGDNGLGKTFVLDLIWWVLTG 48


>gi|153829654|ref|ZP_01982321.1| conserved hypothetical protein [Vibrio cholerae 623-39]
 gi|148874882|gb|EDL73017.1| conserved hypothetical protein [Vibrio cholerae 623-39]
          Length = 565

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + I+ + I+ +R++ +       Q T+ +G+N  GKTN   A+S    G
Sbjct: 1  MYIRKVTINNYRSFRTFEAKLQ-QLTVVIGENDTGKTNFFTALSLPLSG 48


>gi|126207980|ref|YP_001053205.1| hypothetical protein APL_0496 [Actinobacillus pleuropneumoniae
          L20]
 gi|126096772|gb|ABN73600.1| hypothetical protein APL_0496 [Actinobacillus pleuropneumoniae
          serovar 5b str. L20]
          Length = 547

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          I  LNI  +R   +L LVF     +  G NG  K++IL
Sbjct: 2  ITDLNIIHYRKLKNLSLVFKPGINLISGTNGTCKSSIL 39


>gi|53720442|ref|YP_109428.1| putative RecN DNA repair protein [Burkholderia pseudomallei
          K96243]
 gi|167817270|ref|ZP_02448950.1| putative RecN DNA repair protein [Burkholderia pseudomallei 91]
 gi|52210856|emb|CAH36844.1| putative RecN DNA repair protein [Burkholderia pseudomallei
          K96243]
          Length = 549

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 5/63 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2  LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67 IGS 69
           GS
Sbjct: 57 TGS 59


>gi|315122996|ref|YP_004065002.1| exonuclease sbcCD subunit C [Pseudoalteromonas sp. SM9913]
 gi|315016756|gb|ADT70093.1| exonuclease sbcCD subunit C [Pseudoalteromonas sp. SM9913]
          Length = 1216

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          +KI  + I    + A   + F      DA      GD G GK+ +L+AI      +  R 
Sbjct: 1  MKITAVRIHNLASIADAEIDFLASPLKDAGLFAITGDTGAGKSTVLDAICLALYTKTARL 60

Query: 59 ASYA-DVTRIGSPSFFSTFARVEGMEGLAD 87
               ++      +     AR     G  +
Sbjct: 61 KGDKGNLIDFNGDNIKLNDARNLLRRGKWE 90


>gi|294892698|ref|XP_002774189.1| DNA repair protein RAD50, putative [Perkinsus marinus ATCC 50983]
 gi|239879406|gb|EER06005.1| DNA repair protein RAD50, putative [Perkinsus marinus ATCC 50983]
          Length = 123

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYASLRLV---FDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  L I   R+++S R+    F+   T+ VG NG GKT ++E +   + G
Sbjct: 4  LNKLGIQGIRSFSSERIEAIEFEKPVTLIVGHNGAGKTTVIECLKMATTG 53


>gi|193076170|gb|ABO10785.2| recombination and DNA repair protein [Acinetobacter baumannii ATCC
           17978]
          Length = 555

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 89/275 (32%), Gaps = 35/275 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVR-CLQINDVV--IR 111
            GS     T                E         I L      + R    +N     + 
Sbjct: 57  YGSDKADVTAVFTYQDNSPEAKWLKEHELDDDSGEIHLRRVIFATGRSKAWVNGRPSSLS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR--GR 169
            + EL + L   +   S  ++        + +LDR              D         R
Sbjct: 117 ELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDR-----YSNFYAEANDVREAYSTWQR 169

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
           N    +   D+        ++A L ++I      +      +  E+ +  +  HI    +
Sbjct: 170 NIRQHQAALDAQATRL--QRIATLELQIEELEEIIQTDYKEIEQEFDRLSHHEHIMQDCS 227

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
             L+   D++   + +E +  +   R+++S + R+
Sbjct: 228 YSLNA-LDEAEQNITQEMSSII---RRLESHAGRS 258


>gi|189240120|ref|XP_973544.2| PREDICTED: similar to structural maintenance of chromosomes 6 smc6
           [Tribolium castaneum]
          Length = 1002

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63
           I  + +  F  ++ L +      +I +G NG GK+ IL A+     G+     R  S   
Sbjct: 47  IIRMVLKNFMCHSMLEVDLSENISIIIGRNGSGKSAILTALVVGLGGKASLTNRGNSVKS 106

Query: 64  VTRIG 68
             + G
Sbjct: 107 FIKTG 111


>gi|171913200|ref|ZP_02928670.1| hypothetical protein VspiD_18510 [Verrucomicrobium spinosum DSM
           4136]
          Length = 772

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 10/167 (5%)

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
             R +  NA      E+  +E F  I  ++  F     D      +E+  +    G ++ 
Sbjct: 447 ARRAKFANAAFKKSREFAIEEVFARISGTVLAFYKKLHDS-----EEQNERSECTGLELK 501

Query: 259 SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
             SR    G   +   ++  D     A  S G    + + IFLA  ++ + T     +L+
Sbjct: 502 PDSRAAAGGLKLAIQFLELADPKDPRAFLSEGHLDSLGLCIFLATVKIFNPTG---TMLV 558

Query: 319 LDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNETAK 363
           LD++   +D+D R+ +  ++ D     QI +T  D+  FD L   ++
Sbjct: 559 LDDVLTSIDKDHRHRVGELLFDEFHEYQILLTTHDEYWFDLLKSLSR 605


>gi|156042456|ref|XP_001587785.1| hypothetical protein SS1G_11025 [Sclerotinia sclerotiorum 1980]
 gi|154695412|gb|EDN95150.1| hypothetical protein SS1G_11025 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1360

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 16/116 (13%)

Query: 7   IKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
           I +L ++ F++YA    +  F +  +  VG NG GK+N+++++ F+    GFR +     
Sbjct: 207 ITYLILTNFKSYAGRQEVGPFHSSFSSVVGPNGSGKSNVIDSLLFVF---GFRASKMRQG 263

Query: 64  ----VTRIGSP----SFFSTFARVEGMEGLADISIKLETRDDR--SVRCLQINDVV 109
               +    +              + +    D + ++    D   S R  + N   
Sbjct: 264 KISALIHNSAAFPDLDHCEVAVHFQEVMDQPDGTHQIIPNSDLVISRRAFKNNASK 319


>gi|145481615|ref|XP_001426830.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124393907|emb|CAK59432.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1256

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 6   KIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYA 62
           KIK + +  F+++ +   V    + T  +G NG GK+N+L+AI F+     R  R     
Sbjct: 41  KIKGMKVCNFKSFENEHFVGPFTKFTSIIGPNGGGKSNVLDAIQFVLGISIRSMRCHRAE 100

Query: 63  DVT 65
           ++ 
Sbjct: 101 ELI 103


>gi|20089872|ref|NP_615947.1| hypothetical protein MA0995 [Methanosarcina acetivorans C2A]
 gi|19914823|gb|AAM04427.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 251

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISF 49
            L F  + T  +G+NG GK+ ILE+I+ 
Sbjct: 38 QSLSFHPKVTFIIGENGSGKSTILESIAV 66


>gi|329896051|ref|ZP_08271287.1| DNA repair protein RecN [gamma proteobacterium IMCC3088]
 gi|328922011|gb|EGG29375.1| DNA repair protein RecN [gamma proteobacterium IMCC3088]
          Length = 550

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 98/299 (32%), Gaps = 44/299 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I  F     + + FDA  T+  G+ G GK+ +++A+      R     + +   R
Sbjct: 2   LTHIHIKNFAVVEDIAIDFDAGMTVITGETGAGKSILIDALGLCLGDR-----ADSSSVR 56

Query: 67  IGSP-----------SFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G+                  A +      +D  + L        R    IN V    + 
Sbjct: 57  YGADKAEISASFDLHGLAQAQAWLAKHHLDSDDDLVLRRIVTSEGRSKAYINGVPCTAQQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI----DFERLMRG 168
            +EL + L       +   + +      R  LD ++   D  +  R+     +F  + + 
Sbjct: 117 CNELGEFLVDIHGQHAHQSLMNK--KTHRHILDALIA--DTSYLHRVRELAHEFREVKKE 172

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR---------------VEMINALSSLIM 213
            + L      +    + +E Q+ EL   I  A                  +I  LS    
Sbjct: 173 LDALTQGNSDNQEAKAFLEYQVEELQSVILSADELESLEQEQDLLSQGETLIKQLSEAAY 232

Query: 214 EYVQKENFPHIKLSL--TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
              Q+ +     + L  +G   G   +++  L     +     R ++  S +  + P R
Sbjct: 233 HCEQQSDGLRQTIRLLESGLKSGLTSEAYELLNSALIQVDEARRDIERRSDKLELNPER 291


>gi|305663064|ref|YP_003859352.1| ABC transporter related [Ignisphaera aggregans DSM 17230]
 gi|304377633|gb|ADM27472.1| ABC transporter related [Ignisphaera aggregans DSM 17230]
          Length = 237

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 15/106 (14%)

Query: 274 IVDYCDKAITI-AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           +V   DKA       S GEQ+ V +                  I+L+DE +AHLD +  +
Sbjct: 134 MVRLGDKAYRKPDELSGGEQQRVAIA---------RALVTRPSIVLMDEPTAHLDSETGS 184

Query: 333 ALFRIVTDIGS---QIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
            L ++V  + S   Q F+  T   +   +N   K +RI + + + I
Sbjct: 185 ELMKLVKRLNSKLKQTFIIATHDPIV--VNSCEKVIRIRDGKIISI 228


>gi|326315890|ref|YP_004233562.1| AAA ATPase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372726|gb|ADX44995.1| AAA ATPase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 251

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          ++ F    T FVG+NG GK+ +LEA   L+ G GF
Sbjct: 37 QIDFHPNVTFFVGENGAGKSTVLEA---LALGMGF 68


>gi|227113652|ref|ZP_03827308.1| SMC protein-like protein [Pectobacterium carotovorum subsp.
          brasiliensis PBR1692]
          Length = 249

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 17 NYASLR-LVFDAQHTIFVGDNGVGKTNILEAISF 49
          +  SL  L    + T F+G+NG GK+ +LEAI+ 
Sbjct: 29 SIRSLDKLELHPKVTFFIGENGAGKSTLLEAIAV 62


>gi|213619279|ref|ZP_03373105.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 165

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            G+      + FA  +    L  +  + +  + R     ++     R    +N 
Sbjct: 57  TGATRADLCARFALKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING 109


>gi|184156657|ref|YP_001844996.1| ATPase [Acinetobacter baumannii ACICU]
 gi|332873065|ref|ZP_08441022.1| DNA repair protein RecN [Acinetobacter baumannii 6014059]
 gi|183208251|gb|ACC55649.1| ATPase [Acinetobacter baumannii ACICU]
 gi|323516423|gb|ADX90804.1| ATPase [Acinetobacter baumannii TCDC-AB0715]
 gi|332738577|gb|EGJ69447.1| DNA repair protein RecN [Acinetobacter baumannii 6014059]
          Length = 555

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 24/184 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVR-CLQINDVV--IR 111
            GS     T                E         I L      + R    +N     + 
Sbjct: 57  YGSDKADVTAVFTYQDNSPEAKWLKEHELDDDSGEIHLRRVIFATGRSKAWVNGRPSSLS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRGR 169
            + EL + L   +   S  ++        + +LDR    +A     R     ++R +R  
Sbjct: 117 ELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDRYSNFYAEANDVREAYSTWQRNIRQH 174

Query: 170 NRLL 173
              L
Sbjct: 175 QAAL 178


>gi|75571298|sp|Q5ZJY5|SMC5_CHICK RecName: Full=Structural maintenance of chromosomes protein 5;
           Short=SMC protein 5; Short=SMC-5
 gi|53133044|emb|CAG31958.1| hypothetical protein RCJMB04_14g12 [Gallus gallus]
          Length = 1065

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 2/103 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYADVT 65
           I  + +  F  Y    +       + +G NG GK++I+ AI     G+  F   +   V 
Sbjct: 32  IVRIYMENFLTYDICEVRPGPNLNMIIGANGTGKSSIVCAICLGLAGKPSFLGRAEK-VG 90

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                        +E  +   +I I  E +   +     IN  
Sbjct: 91  LFVKQGCLKGLVEIELFKVPENIIITREIQVVTNTSTWHINRK 133


>gi|291383350|ref|XP_002708283.1| PREDICTED: SMC5 protein [Oryctolagus cuniculus]
          Length = 1102

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
           I  +++  F  Y    +       + +G NG GK++I+ AI     G+
Sbjct: 53  IVRISMENFLTYDVCEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGK 100


>gi|260556312|ref|ZP_05828531.1| DNA repair protein RecN [Acinetobacter baumannii ATCC 19606]
 gi|260410367|gb|EEX03666.1| DNA repair protein RecN [Acinetobacter baumannii ATCC 19606]
          Length = 555

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 24/184 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVR-CLQINDVV--IR 111
            GS     T                E         I L      + R    +N     + 
Sbjct: 57  YGSDKADVTAVFTYQDNSPEAKWLKEHELDDDSGEIHLRRVIFATGRSKAWVNGRPSSLS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRGR 169
            + EL + L   +   S  ++        + +LDR    +A     R     ++R +R  
Sbjct: 117 ELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDRYSNFYAEANDVREAYSTWQRNIRQH 174

Query: 170 NRLL 173
              L
Sbjct: 175 QAAL 178


>gi|255010435|ref|ZP_05282561.1| DNA repair protein RecN [Bacteroides fragilis 3_1_12]
          Length = 561

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 70/199 (35%), Gaps = 16/199 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  R+ +  
Sbjct: 2   LRSLYIQNYALIEKLDIRFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRQGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            +   R   S      F     +E   +  ++ E +     R   IND       + EL 
Sbjct: 62  CIIEARFDISAYHMEAFFEENELEYEPECILRREVQSSGKSRAF-INDTPASLTQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR---HRRRMIDFERLMRGRNRLLT 174
           + L           +       +   LD ++   +     +     ++++L +  + L+ 
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLD-ILSHNEEALDVYHHLYQEWKKLSKELDELIV 177

Query: 175 EGYFDSSWCSSIEAQMAEL 193
                 +    I  Q+ +L
Sbjct: 178 LAEQSKTDEDYIRFQLEQL 196


>gi|212709685|ref|ZP_03317813.1| hypothetical protein PROVALCAL_00733 [Providencia alcalifaciens
          DSM 30120]
 gi|212687496|gb|EEB47024.1| hypothetical protein PROVALCAL_00733 [Providencia alcalifaciens
          DSM 30120]
          Length = 554

 Score = 44.1 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 9/95 (9%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          + ++ + I  FR    L L  +   T+ +G+N  GK+++L+A+  L        +     
Sbjct: 1  MYLERVEIYGFRGINRLSLELNNN-TVLIGENSWGKSSLLDALDILL-------SPDHRE 52

Query: 65 TRIGSPSFFSTFARVEGMEGLADISIKL-ETRDDR 98
           +  +  F       E       I +K  E+R  R
Sbjct: 53 YQFNANDFHHPTGDDETRFRTLQIVLKFCESRPGR 87


>gi|326783105|ref|YP_004323502.1| recombination endonuclease subunit [Prochlorococcus phage P-HM2]
 gi|310005523|gb|ADO99911.1| recombination endonuclease subunit [Prochlorococcus phage P-HM2]
          Length = 573

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 84/276 (30%), Gaps = 50/276 (18%)

Query: 18  YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFA 77
           ++ ++L      T+ VG NG GK+  L+A+ +    + FR+ +   +    +        
Sbjct: 19  FSEIQLDTSPA-TLIVGANGAGKSTFLDAMCYALFDKPFRKITKGQLVNAVNEK--DLLV 75

Query: 78  RVEGMEGLADISIKLETRDDRSVRCLQINDVVIR------------VVDELNK------- 118
            +E   G  +  ++   + +  +  + +N    +                L         
Sbjct: 76  ELEFAIGSREYMVRRGRKPN--LFEIYLNGEKTKEEASTLEQQKYLEQSILGLNYKSFTQ 133

Query: 119 --HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              L  S  VP M          RR  ++ ++        R       +++ R + + E 
Sbjct: 134 VVVLGSSCFVPFMQL----TPPNRREVIEDLLD------IRIFSTMNGILKERCKGIREN 183

Query: 177 YFDSSW-----------CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK 225
             +  +             ++   + E        R   I  +   I +     +   + 
Sbjct: 184 IREVEYQFELAKNKVETQQALIEHLKEQSNANTTRRKAEIKNIEKEIQDITILVDKD-LD 242

Query: 226 LSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           LS +        Q+      +   ++++ R  D   
Sbjct: 243 LSKSYEESLVEYQTVDTDLSQL--RIYESRFKDKQK 276


>gi|294649068|ref|ZP_06726513.1| DNA repair protein RecN [Acinetobacter haemolyticus ATCC 19194]
 gi|292825053|gb|EFF83811.1| DNA repair protein RecN [Acinetobacter haemolyticus ATCC 19194]
          Length = 553

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 28/158 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L L  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLALDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IG----------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV- 109
            G                + + + T   +E   G   +   +            IN    
Sbjct: 57  YGADKADVTAVFSYQPDSAEAHWLTEHELEDDTGEIHLRRVVFATGRSK---AWINGRPS 113

Query: 110 -IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146
            +  + E+ + L   +   S  ++        + +LDR
Sbjct: 114 SLAELKEIGRLLVQLYSQHSQQQLLE--PPYPKHWLDR 149


>gi|124515132|gb|EAY56643.1| conserved protein of unknown function [Leptospirillum rubarum]
 gi|206603705|gb|EDZ40185.1| Conserved protein of unknown function [Leptospirillum sp. Group
          II '5-way CG']
          Length = 657

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 5  IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          +K+  ++++ FR+           Q    VG N  GKT IL+A++ L+P
Sbjct: 1  MKLTKIHVTNFRSVEDSGEFDLG-QVLCLVGKNEAGKTAILQALAGLNP 48


>gi|317026241|ref|XP_001389243.2| DNA repair protein Rad50 [Aspergillus niger CBS 513.88]
          Length = 1342

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          K+  L +  F N  S  + F    T+ VG NG GKT I+E + + + G
Sbjct: 34 KLSILGVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 81


>gi|308509930|ref|XP_003117148.1| CRE-SMC-6 protein [Caenorhabditis remanei]
 gi|308242062|gb|EFO86014.1| CRE-SMC-6 protein [Caenorhabditis remanei]
          Length = 1169

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQ-HTIFV--GDNGVGKTNILEAISFLSPGRGF---RRA 59
           ++  + +  F  +A+L + F+ + +  F   G NG GK+ +  AI+    GRG    R  
Sbjct: 64  RVASVRLINFMCHANLEIDFNTKENNCFYIGGPNGSGKSALFAAINLGLGGRGSDNDRGN 123

Query: 60  SYADVTRIGSPSF-FSTFARVEGMEGLADI 88
           +     + G+     +     EG+    D+
Sbjct: 124 TVKSYIKDGTTQAKITITLTNEGLNSHPDL 153


>gi|255319704|ref|ZP_05360912.1| conserved hypothetical protein [Acinetobacter radioresistens
          SK82]
 gi|262380014|ref|ZP_06073169.1| conserved hypothetical protein [Acinetobacter radioresistens
          SH164]
 gi|255303233|gb|EET82442.1| conserved hypothetical protein [Acinetobacter radioresistens
          SK82]
 gi|262298208|gb|EEY86122.1| conserved hypothetical protein [Acinetobacter radioresistens
          SH164]
          Length = 450

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAIS-----FLSPGRGFRR 58
          +K+K + +    ++  L+L  D    T+ +GD   GKT+IL+ I      F +  +  R 
Sbjct: 1  MKLKSVRLKHISHFTDLQLELDEQPLTLIIGDQASGKTSILKNIYQALTWFPARLKDLRT 60

Query: 59 A----SYADVTR 66
          A       D+  
Sbjct: 61 AGVFIQDQDIMH 72


>gi|255716126|ref|XP_002554344.1| KLTH0F03058p [Lachancea thermotolerans]
 gi|238935727|emb|CAR23907.1| KLTH0F03058p [Lachancea thermotolerans]
          Length = 1298

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I  L+I   R++       + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  AIYKLSIQGIRSFDSNERETIEFGKPLTLIVGTNGSGKTTIIECLKYATTG 53


>gi|310639444|ref|YP_003944203.1| hypothetical protein EIO_3106 [Ketogulonicigenium vulgare Y25]
 gi|308753020|gb|ADO44164.1| conserved hypothetical protein [Ketogulonicigenium vulgare Y25]
          Length = 686

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILE 45
           I  FR    + + F+ + T+ VG N  GKT+I E
Sbjct: 2  KIENFRLLQDVEIGFEDRTTLIVGRNNSGKTSIAE 36


>gi|294140878|ref|YP_003556856.1| hypothetical protein SVI_2107 [Shewanella violacea DSS12]
 gi|293327347|dbj|BAJ02078.1| hypothetical protein [Shewanella violacea DSS12]
          Length = 671

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 22/127 (17%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHT-----------IFVGDNGVGKTNILEAISF--- 49
           + IK L I+ FR +  +  +    +             +F G NG GKT+IL A+     
Sbjct: 1   MIIKSLVINNFRVFRGVHEIDLAPRINRKHQTTPSPIILFGGLNGSGKTSILTAVRVALY 60

Query: 50  --LSPGRGFRRASYAD----VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
              + GRG   A Y +    +   G          ++ +   +   I+ E    R  +  
Sbjct: 61  GRAAFGRGMSSAQYQEQLDALIHNGV-GISVDKTSIQLIFTHSHNGIESEYSVTRGWKRG 119

Query: 104 QINDVVI 110
           Q + +V+
Sbjct: 120 QKDKLVL 126



 Score = 41.4 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG-STGEQKVVLVGIF 300
            L+ E+ K      + + +     I     D+ +   +K +    G S GE+++  + I 
Sbjct: 511 QLETEFIKSYRKLARKEDLQLSARINTKTFDVELIDENKHVISRKGLSAGEKQIYAISI- 569

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGTDKSV 354
                 +  T+G    +++D     LD   RN L      +   Q+ +  TD  +
Sbjct: 570 ---LEALGKTSGKKLPIIIDTPLGRLDSKHRNKLIEHYFPEASHQVIILSTDTEI 621


>gi|229584118|ref|YP_002842619.1| hypothetical protein M1627_0608 [Sulfolobus islandicus M.16.27]
 gi|228019167|gb|ACP54574.1| conserved hypothetical protein [Sulfolobus islandicus M.16.27]
          Length = 299

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + I  +N+  FR       +   +  I VG+NG GKT+ LE+I   +  + 
Sbjct: 1  MNISEVNVEGFRGLKIATRL--KRVNIVVGENGSGKTSFLESIFMSTLFQS 49


>gi|167837760|ref|ZP_02464643.1| putative RecN DNA repair protein [Burkholderia thailandensis
           MSMB43]
          Length = 549

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 71/199 (35%), Gaps = 17/199 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRASYA 62
           ++ L+I +F   A+L L FD+  T+F G+ G GK+ +++A++     R      R  S  
Sbjct: 2   LRHLSIRDFVIVAALDLEFDSGFTVFSGETGAGKSILIDALALALGERADASVVRTGSSR 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDV--VIRVVDELNKH 119
                           ++     AD ++ L    D S R    IN     +  + E+ + 
Sbjct: 62  ADISAEFTPHDRVARWLDEHAFDADDTVMLRRVVDASGRSRAFINGTSATLAQLREVGEM 121

Query: 120 LRISWLVPSMDRIFSGLSMERRRF-----LDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           L +        ++      +R  F     L     A+   H R   D    +        
Sbjct: 122 L-VDIHGQHAHQLLMRADAQRELFDTHAGLAADAAAVARGH-RAWRDATHAIEAAQAHER 179

Query: 175 EGYFDSSWCSSIEAQMAEL 193
           E   +      +  Q+AEL
Sbjct: 180 ERQLER---EKLAWQLAEL 195


>gi|51598307|ref|YP_072495.1| P115 protein [Borrelia garinii PBi]
 gi|51572878|gb|AAU06903.1| P115 protein [Borrelia garinii PBi]
          Length = 815

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++        D   +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIVLLGFKSFLNRQEFEIDGNLSFIVGPNGCGKSNLIDAVRFCMGEDNLKFLRVED 60

Query: 61 YADVT 65
           +D+ 
Sbjct: 61 ISDLI 65


>gi|73541577|ref|YP_296097.1| chromosome segregation protein SMC [Ralstonia eutropha JMP134]
 gi|72118990|gb|AAZ61253.1| Chromosome segregation protein SMC [Ralstonia eutropha JMP134]
          Length = 1171

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++          Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1   MRLSSIKLAGFKSFVDPTNFQVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRASELRGES 60

Query: 61  YADVT--------RIGSPSFFSTFARVEGM-----EGLADISIKLETRDDRSVRCLQIND 107
             DV         + G  S    F   EG         A++++K     D +     IN+
Sbjct: 61  MQDVIFNGSTARKQAGRASVELVFDNAEGRAAGQWSQYAEVAVKRVLTRDGTS-SYYINN 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 QPVRRRD 126



 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 12/166 (7%)

Query: 188  AQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKE 245
            A + EL       R   ++A S+ + + +   ++    I       L G FDQ      E
Sbjct: 973  AALDELAAA--RERKTFLDAQSADLNDAITTLEDAIAKIDQETRALLQGTFDQVNHHFGE 1030

Query: 246  EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             + +    G+    M+   ++      +      K  TI   S GE+ +  + +  A  +
Sbjct: 1031 LFPQLFGGGQARLIMTGEEILDAGVQVMAQPPGKKNSTIHLLSGGEKALTAIALVFAMFQ 1090

Query: 306  LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQ-IFMT 348
            L       AP  LLDE+ A LD+        +V  +   +Q +F++
Sbjct: 1091 L-----NPAPFCLLDEVDAPLDDANTERYANMVARMSDKTQFVFIS 1131


>gi|46447600|ref|YP_008965.1| hypothetical protein pc1966 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46401241|emb|CAF24690.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 1282

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 130/349 (37%), Gaps = 51/349 (14%)

Query: 27  AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLA 86
              ++  G NGVGK+N+L+AI F    +        +  ++ + +F      ++  +GL 
Sbjct: 351 PMFSVIAGKNGVGKSNLLQAILFGCFSK-------QNEIKLSNNNF--QICSLQNTDGLK 401

Query: 87  DISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL-----VPSMDRIFSGLSMERR 141
            +   +E +        +++  +   + +L+K+     L      PS   +F  +     
Sbjct: 402 PLRQDIEDKSK-----DKLDKELRNSIRDLSKYAANKLLQSRSNTPSAQPLFDEVIESTL 456

Query: 142 RFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
           + +++  F         +  F+R ++  N+         +  +SI  Q+A+L        
Sbjct: 457 QVINKKDFD---SFSFAI--FDRELK--NQFNKRNTPHIADYNSI-QQVAKLA------- 501

Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
                 L  ++ E   K+       +       K +  +   +  +A  + +G   D   
Sbjct: 502 --FDKLLDKMLNETKDKQEAVKRTFAEINNYLVKCNFKYILSETSFAWNVNNGEFKDVNL 559

Query: 262 RRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDE 321
                 P             + +++ S+GE ++VL+ +     R          ++LLDE
Sbjct: 560 TFASTAPWMK------YSLTVPLSNISSGE-RIVLLILL---WRFDQRNIQKESVILLDE 609

Query: 322 ISAHLDEDKRNALFR-----IVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
             AHL       +       +VT++G Q+ MT  + +    + + + F+
Sbjct: 610 PDAHLHPSMVKEVIDVIKTKLVTELGIQVIMTTHNPTTVSFVPKKSLFI 658


>gi|325696379|gb|EGD38270.1| hypothetical protein HMPREF9384_2267 [Streptococcus sanguinis
           SK160]
          Length = 616

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 60/376 (15%), Positives = 129/376 (34%), Gaps = 67/376 (17%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           I+ +   ++++   + R+ F    T+ VG NG  KT+IL+A+   + G+           
Sbjct: 27  IEHIRFPKYKSLVPNSRIDFTYPITLLVGQNGGNKTSILQALYGSTDGKS---------- 76

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE----LNKHLR 121
            IG   F +   +++   G+           + + + ++I  +  R++ E      +  R
Sbjct: 77  -IGDYWFSTDVDKIQSGYGVDRQCFIYGYYFEPANKVVEI--LKTRILRENNPDYWEPAR 133

Query: 122 IS----WLVPSMDRIFSGLSMERRRFLDRMVFAID-PRHRRRM------IDFERLMRGRN 170
                  ++    +     S  R   L + V   D   +           DF+  +R R+
Sbjct: 134 PQRSYDMVIEKDYKALGSSSATRWDVLKKEVVYCDCKEYVSAFDLFFYHYDFQPTLRQRS 193

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
           +              IE  + E        RV++   +S              + L+++ 
Sbjct: 194 KQDFIRLRSKKLAEVIENNLDEY-EYQKKDRVQLNEVVS------------EEVCLAVSK 240

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
            +   +D+      + Y+K+  +              P ++ + V    +A + A   TG
Sbjct: 241 IMGETYDEIKIITHDFYSKQSGNK-------------PSKT-IWVRKNGQAYSEAFAGTG 286

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI----GSQIF 346
           E +V+L+        +I        +LL+DE    L           + +I      Q+ 
Sbjct: 287 EARVILL-----VNDIIKAPKN--SLLLIDEPEISLHPSAVYRFKDFLIEITLRNNHQVV 339

Query: 347 MTGTDKSVFDSLNETA 362
           +T     +     + A
Sbjct: 340 ITTHSTQLLKDFPKEA 355


>gi|312879825|ref|ZP_07739625.1| AAA ATPase [Aminomonas paucivorans DSM 12260]
 gi|310783116|gb|EFQ23514.1| AAA ATPase [Aminomonas paucivorans DSM 12260]
          Length = 355

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 62/390 (15%), Positives = 123/390 (31%), Gaps = 71/390 (18%)

Query: 5   IKIKFLNISEFRNYASLRLVF------DAQ-HTIFVGDNGVGKTNILEAISF---LSP-- 52
           +K+   ++  F+      + F      D +  T F+G+NG GKT +L+AI+    L+   
Sbjct: 1   MKLLGCSLKNFKGIREKTISFRGDPQGDPRPLTAFLGENGTGKTTVLQAIALVLSLATRK 60

Query: 53  GRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETR-DDRSVRCLQ-----IN 106
           GR  R              F       E +  L    ++L+    +  VR ++       
Sbjct: 61  GRILRV-----------EDFPWHGFLPERLSSLGPTEVELDVAFGEDEVRAVRELYELTR 109

Query: 107 DVVIRVVDELNKHLRISWLVPSMDRIFS-GLSMERRRFLDRMVFAIDPRHRRRMID-FER 164
                  +E+        LV    ++ S        +FL R    +  +    + + + R
Sbjct: 110 GRPGLTREEIPGSHEEVRLVFREGKLESPQGPDGLAQFLGRYYIQVMQKQDPELRNFYRR 169

Query: 165 LM------RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           +       + RN +   G               E G          +  L   ++ +   
Sbjct: 170 VGGVFWFDQFRNLVTRSGG--------------EWGAAEPGGWSAGVERLREYLVVWWS- 214

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                    ++ F  G        L++ +     D        R    G    D +    
Sbjct: 215 -------YHVSSFPHGVDY--IPDLEKAFQNVFPDVEFAGVQPRNVDSGGGIKDSLFLLR 265

Query: 279 DKAITIAHG--STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
            K         S+GEQ V  +         +        I+L+DE+  HL   ++  L  
Sbjct: 266 KKQRVYDIAEMSSGEQGVFPI-----LYEFVRLRI-AKSIVLVDELEMHLHPFQQQVLLA 319

Query: 337 IVTDIG--SQIFMTGTDKSVFDSLNETAKF 364
            ++ +G   Q  +T     + + + ++ + 
Sbjct: 320 ALSRLGEDCQFVLTTHSPYLEEVIPDSCEV 349


>gi|293194290|ref|ZP_06609976.1| putative antibiotic resistance ABC transporter protein [Actinomyces
           odontolyticus F0309]
 gi|292819737|gb|EFF78751.1| putative antibiotic resistance ABC transporter protein [Actinomyces
           odontolyticus F0309]
          Length = 569

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + EY + L      D+ +  T +      L +   D++  +A  S G++  + + + L  
Sbjct: 137 EAEYDRVLAAMITRDAWTIDTRLEQTLEALDLGGLDRSRPLASLSPGQRARLHLALTL-- 194

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
                        L+LDE + HLD D R  L   + +    + MT  D++  +
Sbjct: 195 -------VDRPEALVLDEPTNHLDTDGREHLAHTIDNWQGPVLMTSHDRAFIE 240


>gi|215484858|ref|YP_002327097.1| DNA repair protein RecN [Acinetobacter baumannii AB307-0294]
 gi|332854388|ref|ZP_08435340.1| DNA repair protein RecN [Acinetobacter baumannii 6013150]
 gi|332867603|ref|ZP_08437751.1| DNA repair protein RecN [Acinetobacter baumannii 6013113]
 gi|213988549|gb|ACJ58848.1| DNA repair protein RecN [Acinetobacter baumannii AB307-0294]
 gi|332728064|gb|EGJ59455.1| DNA repair protein RecN [Acinetobacter baumannii 6013150]
 gi|332733877|gb|EGJ65023.1| DNA repair protein RecN [Acinetobacter baumannii 6013113]
          Length = 555

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 24/184 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVR-CLQINDVV--IR 111
            GS     T                E         I L      + R    +N     + 
Sbjct: 57  YGSDKADVTAVFTYQDNSPEAKWLKEHELDDDSGEIHLRRVIFATGRSKAWVNGRPSSLS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRGR 169
            + EL + L   +   S  ++        + +LDR    +A     R     ++R +R  
Sbjct: 117 ELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDRYSNFYAEANDVREAYSTWQRNIRQH 174

Query: 170 NRLL 173
              L
Sbjct: 175 QAAL 178


>gi|126664873|ref|ZP_01735857.1| DNA repair protein RecN [Marinobacter sp. ELB17]
 gi|126631199|gb|EBA01813.1| DNA repair protein RecN [Marinobacter sp. ELB17]
          Length = 558

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 41/128 (32%), Gaps = 19/128 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +S +     + L F    T   G+ G GK+ +L+A+     GR     + A   R
Sbjct: 2   LTQLTVSNYAIAERVELHFHKGMTALTGETGAGKSIVLDALGLAMGGR-----ADAGAVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G+     T            + +E  E        L     R  R    IN        
Sbjct: 57  YGAKRADITATFDISAITAARSWLEQQELDDHNDCILRRAISRDGRSRAYINGQPCPLSH 116

Query: 113 VDELNKHL 120
           + EL   L
Sbjct: 117 LKELGGLL 124


>gi|34540766|ref|NP_905245.1| hypothetical protein PG1025 [Porphyromonas gingivalis W83]
 gi|34397080|gb|AAQ66144.1| conserved domain protein [Porphyromonas gingivalis W83]
          Length = 362

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I+ ++I+ +++     +       + +G NG+GK+N + A S +
Sbjct: 2  IQRIDITGYKSIKDQSIKLSP-INVLIGGNGIGKSNFISAFSLI 44


>gi|74830393|emb|CAI39061.1| Structural maintenance of chromosomes 1 [Paramecium tetraurelia]
          Length = 1267

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 6   KIKFLNISEFRNYASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYA 62
           KIK + +  F+++ +   V    + T  +G NG GK+N+L+AI F+     R  R     
Sbjct: 41  KIKGMKVCNFKSFENEHFVGPFTKFTSIIGPNGGGKSNVLDAIQFVLGISIRSMRCHRAE 100

Query: 63  DVT 65
           ++ 
Sbjct: 101 ELI 103


>gi|325498710|gb|EGC96569.1| DNA sulfur modification protein DndD [Escherichia fergusonii
           ECD227]
          Length = 666

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 68/231 (29%), Gaps = 29/231 (12%)

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE--AQMAELGVKINIARVEMIN 206
           +     +R ++ + E+ +      +     D       E    +             ++ 
Sbjct: 397 WQRFELYRTQLSEIEQQLEQAAANIARAPEDDQLMDLFEKLRGLDRQRETQLQKYRSLLE 456

Query: 207 ALSSLIMEYVQ-----KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR------ 255
                  + +      ++     +         K  Q    L + Y+  L   R      
Sbjct: 457 DAKRTKQQQLDCVRQIQKAHDAARYQHNYSSAFKNAQETINLLDRYSDVLTQARVKTLST 516

Query: 256 ----------KMDSMSRRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAHA 304
                     + + +     I P   D+ +   + ++      S GE+++  + I     
Sbjct: 517 NFELAYRKLARKEDLQLSAHINPQTFDVELIDENGSVINRKLLSAGEKQIYAIAI----L 572

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALF-RIVTDIGSQIFMTGTDKSV 354
             ++ T+G    +++D     LD   R+ L      +   Q+ +  TD  V
Sbjct: 573 EALAKTSGRDLPVIIDTPLGRLDSQHRDKLINHYFPEASHQVVLLSTDTEV 623



 Score = 41.0 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQ----------HTIFVGDNGVGKTNILEAISFLSPG 53
          + IK L +  FR +  +  +    +            +F G NG GKT+IL AI     G
Sbjct: 1  MLIKQLVLRNFRVFNGTHTIDLAPRKRPHDLNPRPIVLFGGLNGAGKTSILSAIRIALYG 60

Query: 54 R 54
          R
Sbjct: 61 R 61


>gi|312127803|ref|YP_003992677.1| SMC domain-containing protein [Caldicellulosiruptor
          hydrothermalis 108]
 gi|311777822|gb|ADQ07308.1| SMC domain protein [Caldicellulosiruptor hydrothermalis 108]
          Length = 857

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 5  IKIKFLNISEFRNYASL--RLVFDA-QHTIFVGDNGVGKTNILEAISFLSPG 53
          ++  FL I  F++Y      + F   +    +G NG GK++I EAI++   G
Sbjct: 1  MRPLFLRIENFKSYQETQNEIDFSNIKVACIIGKNGNGKSSIAEAIAWALFG 52


>gi|303234050|ref|ZP_07320699.1| RecF/RecN/SMC N-terminal domain protein [Finegoldia magna
          BVS033A4]
 gi|302494975|gb|EFL54732.1| RecF/RecN/SMC N-terminal domain protein [Finegoldia magna
          BVS033A4]
          Length = 646

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 5  IKIK--FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +KIK   L I  F+   +L + F A+ T   G NG+GKT + +A S+L
Sbjct: 1  MKIKLIELKIENFKGIKNLVIDF-AKTTHISGRNGIGKTTVFDAYSWL 47


>gi|152966508|ref|YP_001362292.1| SMC domain protein [Kineococcus radiotolerans SRS30216]
 gi|151361025|gb|ABS04028.1| SMC domain protein [Kineococcus radiotolerans SRS30216]
          Length = 829

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 48/159 (30%), Gaps = 18/159 (11%)

Query: 7   IKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           I+ + +   R+     +    D   T   G  GVGK+ +L  + +   G          +
Sbjct: 4   IESVELVNVRSIGRAVVEPLVDGGVTALNGPRGVGKSTVLIGLLYALFGTTPDGVPAQAL 63

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-------------VRCLQINDVVIR 111
            R GS                  +   L+ R+D                +    N+ VIR
Sbjct: 64  RRQGSEGEVKIVVTFVHDGQRIVLERGLKGRNDTPYAKVTLNGIEQTVGKIKAANEWVIR 123

Query: 112 VVDEL---NKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147
              +L               +D +    + +RR   +R+
Sbjct: 124 RFGDLDATGFLAAFVVRQKELDALVKARAADRRALFERL 162


>gi|332874201|ref|ZP_08442124.1| hypothetical protein HMPREF0022_01737 [Acinetobacter baumannii
          6014059]
 gi|332737623|gb|EGJ68527.1| hypothetical protein HMPREF0022_01737 [Acinetobacter baumannii
          6014059]
          Length = 349

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 1  MTNRI-KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          MT+ I ++K + ++ FR   ++ +    + T+  G NG  K+ IL
Sbjct: 1  MTSNITQLKKIKVNHFRGLKNIEINLGDRLTVICGKNGTSKSTIL 45


>gi|302335892|ref|YP_003801099.1| DNA replication and repair protein RecN [Olsenella uli DSM 7084]
 gi|301319732|gb|ADK68219.1| DNA replication and repair protein RecN [Olsenella uli DSM 7084]
          Length = 546

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 6/101 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  L++ +        +      T+  G+ G GK+ +L +I  L   R       A   R
Sbjct: 2   IDELHVQDVALIRDATIAPAPGLTVLTGETGAGKSALLSSIQLLMGERS-----DASAVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
            G+        RV      A+  +     +      ++I+ 
Sbjct: 57  EGAD-GLVVEGRVFLSASDAEGVVVRRRVEAEGRGRVEIDG 96


>gi|269859569|ref|XP_002649509.1| chromosome segregation ATPase [Enterocytozoon bieneusi H348]
 gi|220067060|gb|EED44528.1| chromosome segregation ATPase [Enterocytozoon bieneusi H348]
          Length = 917

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 6/46 (13%)

Query: 5  IKIKFLNISE---FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + I+ +++     F+NY  + L         +G NG GK+N + AI
Sbjct: 1  MYIESISLQNYKSFKNYTKIHLT---SVNWILGTNGSGKSNFISAI 43



 Score = 39.9 bits (92), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 271 SDLI-VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
            D++ +   ++       S G++ + ++   L+  ++        PI + DEI A+LD  
Sbjct: 813 DDIMNIKINNEEYCFKSLSGGQKTLFIICFILSIHKIY-----PLPIYIFDEIDANLDVV 867

Query: 330 KRNALFRIVTDIGSQIFMTG 349
             + ++ ++  + SQ  +T 
Sbjct: 868 HTSKIYNLLLQLNSQFIITT 887


>gi|121603816|ref|YP_981145.1| DNA repair protein RecN [Polaromonas naphthalenivorans CJ2]
 gi|120592785|gb|ABM36224.1| DNA replication and repair protein RecN [Polaromonas
           naphthalenivorans CJ2]
          Length = 549

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 15/116 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + +K + + +F     + L      T+  G+ G GK+ ++ A+  +   R       A V
Sbjct: 1   MSLKSIALRDFVIVREMDLDLSQGFTVLTGETGAGKSILIGALQLVLGARS-----DAGV 55

Query: 65  TRIGS---------PSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI 110
            R G+          +       +E     +  ++ L    D   +    IN   +
Sbjct: 56  VREGAGRCEISAEFDNAARLAPWLEQAGLESGETLLLRRTIDAQGKSRAWINGSAV 111


>gi|14250920|emb|CAC39248.1| SMC6 protein [Homo sapiens]
          Length = 1091

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 18/100 (18%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ +++  F  ++ L    F +     VG+NG GK+ +L A+     GR     R +S  
Sbjct: 48  IESIHLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNRGSSLK 107

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
              + G  S              ADISI L  R D + + 
Sbjct: 108 GFVKDGQNS--------------ADISITLRNRGDDAFKA 133


>gi|78780191|ref|YP_398303.1| DNA repair protein RecN, ABC transporter [Prochlorococcus marinus
           str. MIT 9312]
 gi|78713690|gb|ABB50867.1| DNA replication and repair protein RecN [Prochlorococcus marinus
           str. MIT 9312]
          Length = 559

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 28/167 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++KIK + +        + + F+    I  GD+G GK+ +L++++ L  G       
Sbjct: 1   MLIQLKIKNIAL-----IEIIEINFEKGLNIITGDSGSGKSLVLDSLNVLFGGT---NIP 52

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD------RSVRCLQINDV------ 108
              + R G     +  A+      + +  I    +        + +   + N V      
Sbjct: 53  LKHLIRPG-KDHCAIEAKFSSSFHINNWLISNGFQSSSSVLNIKRISYRKNNKVLSKYSL 111

Query: 109 -----VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA 150
                  + ++EL   L         D        +RR  +D +   
Sbjct: 112 NNLSINKKSLEELGGLL--IDFAGQSDTFIFHTQDKRRLIIDDLCSH 156


>gi|328703668|ref|XP_001946623.2| PREDICTED: structural maintenance of chromosomes protein 5-like
           [Acyrthosiphon pisum]
          Length = 1044

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 11/98 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  +  +     ++  + +G NG GK++I+ A+  L  G      +  D+ R
Sbjct: 31  IVKVVLKNFMTFTEVTYTPHSKLNLIIGPNGSGKSSIVTAL-ILGFG-----GNPKDINR 84

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
                       V+  + +ADISI+L  R +++V   +
Sbjct: 85  -----GDKVSQFVKKGKSVADISIELYKRSNQNVHLRR 117


>gi|315639629|ref|ZP_07894769.1| DNA repair protein RecN [Enterococcus italicus DSM 15952]
 gi|315484590|gb|EFU75046.1| DNA repair protein RecN [Enterococcus italicus DSM 15952]
          Length = 561

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70
           I  F    SL L F    T   G+ G GK+ I++A+  L+  R     +  DV R G+ 
Sbjct: 6  TIENFAIIESLTLSFHEGMTTLTGETGAGKSIIIDALGLLAGSR-----ASVDVIRQGAD 60

Query: 71 SF 72
            
Sbjct: 61 RC 62


>gi|308182377|ref|YP_003926504.1| hypothetical protein HPPC_01025 [Helicobacter pylori PeCan4]
 gi|308064562|gb|ADO06454.1| hypothetical protein HPPC_01025 [Helicobacter pylori PeCan4]
          Length = 805

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 11/54 (20%)

Query: 5  IKI--KFLNISEFRNYA---------SLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K+  + L +  FRN           +          I VG+N VGK+N LEA+
Sbjct: 1  MKLYKRVLKLHHFRNLGKNLPTELLLNSNFEKHGGLVILVGENNVGKSNTLEAL 54


>gi|254258895|ref|ZP_04949949.1| hypothetical protein BURPS1710A_1431 [Burkholderia pseudomallei
          1710a]
 gi|254217584|gb|EET06968.1| hypothetical protein BURPS1710A_1431 [Burkholderia pseudomallei
          1710a]
          Length = 347

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +K+  L I  ++   S +L+F    T  +G N  GK+ +L+AI +L   +
Sbjct: 1  MKLHSLKIDGYKRIQSAQLLFGDA-TFLIGPNNAGKSTVLKAIEWLLSAK 49


>gi|225874730|ref|YP_002756189.1| DNA sulfur modification protein DndD [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792628|gb|ACO32718.1| DNA sulfur modification protein DndD [Acidobacterium capsulatum
           ATCC 51196]
          Length = 655

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 16/198 (8%)

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP--- 222
           ++  N  L       +  ++++ Q+     +I  AR  + +AL + + + +         
Sbjct: 428 LKDANAELARVQ---AAMANLDDQIERWNRQIEDARKNLDSALGTRLKQGISNAEAERVV 484

Query: 223 -HIKL---SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
            HI+L   SL  +L    ++    +  +         +   +     I PH   + +   
Sbjct: 485 RHIELVDRSLQEYLVKMVERHSGDISSKILASFRLIARKPELLSGLKIDPHTFHMSLTGN 544

Query: 279 -DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR- 336
             K I     S GE++++   I       ++ ++G     L+D     LD   R  + + 
Sbjct: 545 SGKHIDPGELSAGERQILAFAI----LDGLAKSSGRQIPTLIDSPLGRLDGIHRQRIAQH 600

Query: 337 IVTDIGSQIFMTGTDKSV 354
            +     Q  +  TDK V
Sbjct: 601 YLPSASHQTIVFSTDKEV 618


>gi|219849814|ref|YP_002464247.1| SMC domain-containing protein [Chloroflexus aggregans DSM 9485]
 gi|219544073|gb|ACL25811.1| SMC domain protein [Chloroflexus aggregans DSM 9485]
          Length = 1031

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 9/103 (8%)

Query: 9   FLNISEFRNYAS-----LRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
            L++  F  Y +     LRL  D        G+NG GK+ +L+AI++   G+   R++  
Sbjct: 5   QLSLRNFMCYRTDDGKPLRLELDGLHVLCLSGENGAGKSTLLDAITWALWGKA--RSADD 62

Query: 63  DVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
           D+   G           ++G         +      +     +
Sbjct: 63  DLITQGETEMMVELVFALDGRTYRVIRQHQRGRSTGKGTSAGK 105



 Score = 39.5 bits (91), Expect = 0.79,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 68/207 (32%), Gaps = 27/207 (13%)

Query: 156  RRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI--- 212
             R +   ER +  +   L +    ++   +++AQ      +    R  +   L+      
Sbjct: 818  ARALQIAERDLTEKQTYLRQAEAAAAQLETLQAQ-----ERQLCERSALFAELAEAFGKK 872

Query: 213  --MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHR 270
                 + +   P I+             S  A   +    L    + D+    T+     
Sbjct: 873  GVQAMLIETAIPQIE---------DEANSLLARLTDGQMHLRFEMQRDTKKGDTVETL-- 921

Query: 271  SDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP-ILLLDEISAHLDED 329
             D+ V            S GE   V   I +A +RL+++  G     L++DE    LD D
Sbjct: 922  -DVRVADALGTRDYKTFSGGEAMRVNFAIRIALSRLLAHRAGARLETLVIDEGFGTLDAD 980

Query: 330  KRNALFRIVTDIGS----QIFMTGTDK 352
             R  +   +T I       I +T  D 
Sbjct: 981  GRERMVEAITAIQQDFARIIVITHIDD 1007


>gi|120404263|ref|YP_954092.1| DNA repair protein RecN [Mycobacterium vanbaalenii PYR-1]
 gi|119957081|gb|ABM14086.1| DNA replication and repair protein RecN [Mycobacterium vanbaalenii
           PYR-1]
          Length = 591

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 85/292 (29%), Gaps = 52/292 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----F 56
           M   I+I+ L        ++    FD   T+  G+ G GKT ++  +  L   R      
Sbjct: 1   MLAEIRIEALGA-----ISAATAEFDGGLTVLTGETGAGKTMVVTGLHLLGGARADATKV 55

Query: 57  RRASYADVT--RI-GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
           R  +   V   R   +    +  A+V+G+   +      E  DD SV   +         
Sbjct: 56  RSGADRAVVEGRFTTAEVGDAVAAQVDGILDSS----GAERDDDGSVIAARSVSRDGPSR 111

Query: 114 DELNKHL----RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
             L         +S     +  +       R    D    A+D R+        R    R
Sbjct: 112 AYLGGRSVPAKSLSGFTNELLTLHGQNDQLRLMRPDEQRAALD-RYADVATQLHRYRTAR 170

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKI----------------------NIARVEMINA 207
           +  L E   D         +MA+   ++                       I R+  ++A
Sbjct: 171 DSWL-EAKRDLDDRRRRAREMAQEADRLQFALNEIDVIDPHSGEDDALVAEIRRLSELDA 229

Query: 208 LSSLIMEYVQKENFP--------HIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
           L   +       +          H        L+G  D    AL E+    L
Sbjct: 230 LREAVQTARAALSGESDDGFSAAHAVGQARSALEGTDDAPLKALAEQLGSAL 281


>gi|110347357|ref|YP_666173.1| SMC protein-like [Mesorhizobium sp. BNC1]
 gi|110287533|gb|ABG65590.1| SMC protein-like [Chelativorans sp. BNC1]
          Length = 671

 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 59/153 (38%), Gaps = 6/153 (3%)

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD-GRKMDSMSRRTLIGPHRS 271
               + E       +L  +     D     L+ E+ +      RK+D ++   +     +
Sbjct: 482 AATHRAELASRTAQALADYEHRLLDHKLTQLRAEFVRCFNHLVRKVDLIADVRIDSASFA 541

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
             ++D   + +  A  S GE++V  + +  A    ++ T+G    +++D   A LD + R
Sbjct: 542 ATLIDAAGREVPKAALSAGEKQVYAIAMLWA----LARTSGRPLPMIIDTPLARLDSEHR 597

Query: 332 NALF-RIVTDIGSQIFMTGTDKSVFDSLNETAK 363
             L  R       Q+ +  TD  + D L    +
Sbjct: 598 ANLVGRYFPAASHQVILLSTDTEIDDHLVGDLQ 630



 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 12/113 (10%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQ--------HTIFVGDNGVGKTNILEAISFLSPGRG 55
           + ++ + + +F  YA +  L    +          +  G NG GKT +LEA+     G  
Sbjct: 1   MILRSIRLEDFGLYAGVTDLDLVPRQRLGGPTPIILIGGKNGAGKTTLLEAVRLALYG-- 58

Query: 56  FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            RRA  A V++    ++       +     A ++++ +  +  +V   ++   
Sbjct: 59  -RRALGARVSQADYEAYLRQRINRDATTPAAAVALEFDYAEAGTVHRYRVRRE 110


>gi|332253761|ref|XP_003276000.1| PREDICTED: structural maintenance of chromosomes protein 6 isoform
           1 [Nomascus leucogenys]
 gi|332253763|ref|XP_003276001.1| PREDICTED: structural maintenance of chromosomes protein 6 isoform
           2 [Nomascus leucogenys]
 gi|332253765|ref|XP_003276002.1| PREDICTED: structural maintenance of chromosomes protein 6 isoform
           3 [Nomascus leucogenys]
          Length = 1091

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 18/100 (18%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ +++  F  ++ L    F +     VG+NG GK+ +L A+     GR     R +S  
Sbjct: 48  IESIHLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNRGSSLK 107

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
              + G  S              ADISI L  R D + + 
Sbjct: 108 GFVKDGQNS--------------ADISITLRNRGDDAFKA 133


>gi|302134326|ref|ZP_07260316.1| ATP binding protein [Pseudomonas syringae pv. tomato NCPPB 1108]
          Length = 449

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 53/379 (13%), Positives = 111/379 (29%), Gaps = 71/379 (18%)

Query: 8   KFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           K   +     ++ L +          + T+ VG+NG GKT +L +++        R  + 
Sbjct: 1   KSFRLINVGRFSDLEVALAPTELHASRVTVLVGNNGAGKTTLLRSVATSLSWLVARVKTP 60

Query: 62  ADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             V  RI   +                       ++  +   ++++    +++D L +  
Sbjct: 61  KGVGIRIDEDT----------------------IQNGAATASIRVDAYNAQIIDPLIRGA 98

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN-RLLTEGYFD 179
              W         +G    R+     ++  +          +  ++  ++   L    F 
Sbjct: 99  DFYW-------EVAGTLKGRKATSSTVLGELS----MLAEGYRSVLTAKSDSSLPLLAFY 147

Query: 180 SSWCSSIEAQMAELGVKINIA---------RVEMINALSSLIMEYVQKENFPHIKLSLTG 230
               S IE  +                   R            E    EN   I   L  
Sbjct: 148 PVERSVIEIPLKVHAKHTFDQLDGYDDALGRGVDFRRFFEWFREREDSENETGIPTELLT 207

Query: 231 FLDGKFDQSFCALKEEYAKKLFDGRKMDSMS----------RRTLIGPHRS---DLIVDY 277
            L          L +  +++    R     +            T +   R     + +D 
Sbjct: 208 KLSQTISID-TELWKVLSREHASSRDRQLTAVRNAIAAFLPGFTNLRVKRKPRLHMAIDK 266

Query: 278 CDKAITIAHGSTGEQKVVLV----GIFLAHAR-LISNTTGFAPILLLDEISAHLDEDKRN 332
             + + ++  S GE+ ++ +       LA     + N      I+L+DE+  HL    + 
Sbjct: 267 NGQTLNVSQLSQGEKSMMALVGDIARRLAMMNPALENPLHGNGIVLIDEVDLHLHPKWQR 326

Query: 333 ALFRIVTDI--GSQIFMTG 349
           +L    T      Q  +T 
Sbjct: 327 SLIAQFTKTFPNCQFLLTT 345


>gi|297668145|ref|XP_002812313.1| PREDICTED: structural maintenance of chromosomes protein 6-like
           isoform 1 [Pongo abelii]
 gi|297668147|ref|XP_002812314.1| PREDICTED: structural maintenance of chromosomes protein 6-like
           isoform 2 [Pongo abelii]
 gi|297668149|ref|XP_002812315.1| PREDICTED: structural maintenance of chromosomes protein 6-like
           isoform 3 [Pongo abelii]
          Length = 1091

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 18/100 (18%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ +++  F  ++ L    F +     VG+NG GK+ +L A+     GR     R +S  
Sbjct: 48  IESIHLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNRGSSLK 107

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
              + G  S              ADISI L  R D + + 
Sbjct: 108 GFVKDGQNS--------------ADISITLRNRGDDAFKA 133


>gi|229185447|ref|ZP_04312629.1| hypothetical protein bcere0004_30000 [Bacillus cereus BGSC 6E1]
 gi|228598035|gb|EEK55673.1| hypothetical protein bcere0004_30000 [Bacillus cereus BGSC 6E1]
          Length = 664

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 5  IKIKFLNISEFRN--YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          + I  L++S FR+  Y S  +  +   T  +G N  GKT+++ A+  L   +     +  
Sbjct: 1  MLISELHVSNFRSFGYESQMIETE-NLTALIGANSSGKTSLIMALLRLFGQK----NTDR 55

Query: 63 DVTRIG 68
           + +  
Sbjct: 56 TLIKTD 61


>gi|210615781|ref|ZP_03290762.1| hypothetical protein CLONEX_02980 [Clostridium nexile DSM 1787]
 gi|210150117|gb|EEA81126.1| hypothetical protein CLONEX_02980 [Clostridium nexile DSM 1787]
          Length = 558

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 21/121 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + + +K L + +      + + F     I  G+ G GK+ IL +++    G+      
Sbjct: 1   MLHNLYVKNLALID-----EIEVEFTKGLNILTGETGAGKSIILGSVNLALGGK-----Y 50

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGL----------ADISIKLETRDDRSVRCLQINDVV 109
            AD+ R G+   +      VE                D  + L  +        +IN   
Sbjct: 51  SADIIRKGAEYGYVELTFFVENKTQEEALKRKDIFPEDGVVVLSRKLMSKRSISKINGET 110

Query: 110 I 110
           +
Sbjct: 111 V 111


>gi|50304743|ref|XP_452327.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641460|emb|CAH01178.1| KLLA0C02915p [Kluyveromyces lactis]
          Length = 1296

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I  L+I   R++ S     + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  AIYKLSIQGIRSFDSNDRETIEFGKPLTLIVGTNGSGKTTIIECLKYATTG 53



 Score = 36.4 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 107/328 (32%), Gaps = 69/328 (21%)

Query: 69   SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
            S S  S  A ++ +E   + +++     D   + +++N  ++ +  EL +          
Sbjct: 976  SNSVESKTAEIKSIEDSINNTVQKLKDSDNEFKNIKLNIDLLGLKCELQRIENAI----- 1030

Query: 129  MDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEA 188
                 +    ER ++ +           R    +E+L       L E     +  S+++ 
Sbjct: 1031 SSMDVTHAEQERNKYQEDS--------LRLRTAYEKLSSENAGKLGEIKQLQNQISNLKN 1082

Query: 189  QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYA 248
            Q+      I+                         IKL     +    D    AL     
Sbjct: 1083 QLQTDYKNIDEHYQR------------------EWIKLQTKSLVTDDIDTYSRALDSAIM 1124

Query: 249  K----KLFD-GRKMDSMSRRTLIGPHRSDLIVDYCD--------------------KAIT 283
            K    K+ D  R +D + +RT  G     + +   +                    +   
Sbjct: 1125 KYHSIKMKDINRIIDELWKRTYSGTDVDTIKIKTDEVSNVRGKSYNYRVVMYKQDAELDM 1184

Query: 284  IAHGSTGEQKVVLVGIFLAHARLISNTTGFAP-ILLLDEISAHLDEDKRNALFRIVT--- 339
                S G++ +  + I LA    +S T G    ++ LDE + +LDE+   +L R +    
Sbjct: 1185 RGRCSAGQKVLAAIIIRLA----LSETFGVNCGVIALDEPTTNLDEENIESLARSLATII 1240

Query: 340  -----DIGSQIFMTGTDKSVFDSLNETA 362
                     Q+ +   D+   + +N ++
Sbjct: 1241 EVRRHQKNFQLIVITHDEKFLNHMNASS 1268


>gi|308051213|ref|YP_003914779.1| ATPase AAA [Ferrimonas balearica DSM 9799]
 gi|307633403|gb|ADN77705.1| AAA ATPase [Ferrimonas balearica DSM 9799]
          Length = 483

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 11/146 (7%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA---ISFLSPGRGFRRASYA 62
            ++++ +   R ++  R+          G+NG GK+ I++A   I   +       + + 
Sbjct: 22  HLEWIELDGLRGWSGQRVDLSFPIVAICGENGAGKSTIIQAAASIYDSTSDEKHYASDFF 81

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKL--------ETRDDRSVRCLQINDVVIRVVD 114
             T   S       A ++  +   ++SI+         +TR  R V+ L +  +      
Sbjct: 82  PDTAWDSLEGVVIKASIKEGQNSTEVSIRKPTRRWRGNDTRRQRPVKYLDLRRIQPISAR 141

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMER 140
                L    L  +  R F G +++R
Sbjct: 142 TGYGRLAKPALNEADSRDFEGGALQR 167


>gi|303230306|ref|ZP_07317071.1| hypothetical protein HMPREF9321_0955 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515017|gb|EFL56994.1| hypothetical protein HMPREF9321_0955 [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 951

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 106/310 (34%), Gaps = 32/310 (10%)

Query: 62  ADVTRIGSPSFFSTFARVE---GMEGLADISIKLETRDDRSV-------RCLQINDVVIR 111
             + R           R+E         ++ ++ +   ++S        R   I++   +
Sbjct: 639 QQMIRWEQKESQRKSYRMEYDNWHRKEKELLLEQKALLEKSGLSGANEYRQKLIDEDQFK 698

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR-- 169
             + + K  ++         + +     +  F  R+           +   ++ +  R  
Sbjct: 699 QWETIYKQSQVQL------DLLTPDGENKDLFYRRLREGNKENWTDELAHADQELNARKD 752

Query: 170 ---NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
              N     G    +  +    Q           R E+ + L S + ++  +    H   
Sbjct: 753 AMANLYEKRGQIVEAMRALGSDQEQREA---IQQRQELESELESALEDWATQVVIAHCME 809

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                 + +       L  +Y K+L +G          + G      +++  D+ + I H
Sbjct: 810 RAQQSYEEESQPKMLELASQYIKRLTNG-----AYTFDMWGLQDGLALLNERDERLPIYH 864

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQ 344
            S+G    V + + LA A++ S      PI+L D+I    DED++ +   ++ ++G   Q
Sbjct: 865 WSSGLADQVYLALRLALAKVFSYQVDALPIIL-DDILVRFDEDRQKSALELLAELGEHQQ 923

Query: 345 IFMTGTDKSV 354
           I++    + V
Sbjct: 924 IWLFTCQQQV 933



 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          + IK + +  F  Y +           +  G N  GKT++LE +  L  G   +
Sbjct: 1  MNIKQIRLDSFGPYENWTFTSGPNGVQLVYGANESGKTSLLEGMRSLLFGGKHK 54


>gi|220935194|ref|YP_002514093.1| chromosome segregation SMC protein [Thioalkalivibrio sp.
          HL-EbGR7]
 gi|219996504|gb|ACL73106.1| chromosome segregation SMC protein [Thioalkalivibrio sp.
          HL-EbGR7]
          Length = 1168

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + ++ F+++     +   +     VG NG GK+N ++A+ ++   S  +  R  S
Sbjct: 1  MRLSKIKLAGFKSFVDPTTIDLPSNLVGIVGPNGCGKSNTIDAVRWVMGESSAKHLRGDS 60

Query: 61 YADVTRIGSPS 71
            DV   GS S
Sbjct: 61 MEDVIFNGSSS 71


>gi|167462155|ref|ZP_02327244.1| hypothetical protein Plarl_06295 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 436

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 58/411 (14%), Positives = 126/411 (30%), Gaps = 88/411 (21%)

Query: 6   KIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           KI  L I   +   ++++    +  T+  G N  GKT++L+AI++   G  +R +     
Sbjct: 3   KINKLEIENVKRVKAVKIEPTTSGLTVVGGKNNQGKTSVLDAIAWGLGGNKYRPSQAK-- 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS-VRCLQINDVV--IRVVDELNKHLR 121
            R GS         +          + +E +   S ++ +  N      +++D   + L 
Sbjct: 61  -REGSAVPPHLHIVLSN-------GLVVERKGKNSDLKVIDPNGQKGGQQLLDSFVEELA 112

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH---------RRRMIDFERLMRGRNRL 172
           I      + +  +  + E+   L R++   D  H           +     ++   + + 
Sbjct: 113 I-----DLPKFMNASNKEKANILLRIIGVGDKLHELETKEQEVYNQRHAIGKIADQKAKY 167

Query: 173 LTEGYFDS----------SWCSSIEAQMAELGV-KINIARVEMINALSSLIMEYVQKENF 221
             E  +                  +  +A+ G  +    R+    A      + + +   
Sbjct: 168 AKEQPYYPDAPKEPVSAAELIRQQQEILAKNGENQRKRQRLNYFEAEREAKGKEIARLEA 227

Query: 222 PHIKLSLTGFLDGKF------------DQSFCALK------EEYAKKLFDGRKMDSM--- 260
             IKL       G+             D+S   L+      +E  +K+      D     
Sbjct: 228 ELIKLKEEYMKIGEDLAIARKDALDLHDESTAELEANIQQIDEINRKVRANLDKDKAEAD 287

Query: 261 ------------SRRTLIGPHRSDLIVDYCDKAITIAHGS--------TGEQK---VVLV 297
                       +  T I   ++DL     +  + +   S         G++        
Sbjct: 288 ASEYRVQYDKLSAEITEIRQQKTDL---LKNANLPLPSLSVEDGELVYNGQKWDNMSGAD 344

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
            + ++ A  I          +L +    +D D      + +   G Q   T
Sbjct: 345 QLKVSTA--IVRKLKPDCGFILLDKLEQMDIDTLREFGQWLEQEGLQAIAT 393


>gi|169617864|ref|XP_001802346.1| hypothetical protein SNOG_12112 [Phaeosphaeria nodorum SN15]
 gi|160703502|gb|EAT80524.2| hypothetical protein SNOG_12112 [Phaeosphaeria nodorum SN15]
          Length = 1552

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 7   IKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYA 62
           I +L ++ F++YA    +  F A  +  VG NG GK+N+++++ F+   R    R+   +
Sbjct: 263 ITWLVMTNFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVFGFRASKMRQGKLS 322

Query: 63  DVTRIGSPSFFSTFARVEGMEGLA 86
            +    +      F  VE      
Sbjct: 323 ALIHNSAGFQDLDFCEVEVHFQEV 346


>gi|270012741|gb|EFA09189.1| structural maintenance of chromosomes 6 [Tribolium castaneum]
          Length = 1070

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63
           I  + +  F  ++ L +      +I +G NG GK+ IL A+     G+     R  S   
Sbjct: 47  IIRMVLKNFMCHSMLEVDLSENISIIIGRNGSGKSAILTALVVGLGGKASLTNRGNSVKS 106

Query: 64  VTRIG 68
             + G
Sbjct: 107 FIKTG 111


>gi|91205916|ref|YP_538271.1| DNA repair protein RecN [Rickettsia bellii RML369-C]
 gi|157826723|ref|YP_001495787.1| DNA repair protein RecN [Rickettsia bellii OSU 85-389]
 gi|122425341|sp|Q1RHI2|RECN_RICBR RecName: Full=DNA repair protein recN; AltName:
          Full=Recombination protein N
 gi|91069460|gb|ABE05182.1| DNA repair protein RecN [Rickettsia bellii RML369-C]
 gi|157802027|gb|ABV78750.1| DNA repair protein RecN [Rickettsia bellii OSU 85-389]
          Length = 550

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
           L++  F     L + F     +  G+ G GK+ +L+AI F    +     S A + + G
Sbjct: 4  SLSVKNFILIDELEIEFTNGLCVITGETGAGKSILLDAILFCLGYK----TSSAGIIKHG 59

Query: 69 SPSFFSTFA 77
                   
Sbjct: 60 KDYAAVNIV 68


>gi|86129602|ref|NP_001034424.1| structural maintenance of chromosomes protein 5 [Gallus gallus]
 gi|60098715|emb|CAH65188.1| hypothetical protein RCJMB04_6o14 [Gallus gallus]
          Length = 1064

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 2/103 (1%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASYADVT 65
           I  + +  F  Y    +       + +G NG GK++I+ AI     G+  F   +   V 
Sbjct: 32  IVRIYMENFLTYDICEVRPGPNLNMIIGANGTGKSSIVCAICLGLAGKPSFLGRAEK-VG 90

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                        +E  +   +I I  E +   +     IN  
Sbjct: 91  LFVKQGCLKGLVEIELFKVPENIIITREIQVVTNTSTWHINRK 133


>gi|34496316|ref|NP_900531.1| hypothetical protein CV_0861 [Chromobacterium violaceum ATCC 12472]
 gi|34102169|gb|AAQ58536.1| hypothetical protein CV_0861 [Chromobacterium violaceum ATCC 12472]
          Length = 936

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 48/160 (30%), Gaps = 26/160 (16%)

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
            AR   I  L + +  Y Q          +   ++     +  A+  +    L       
Sbjct: 764 EARAAYIGKLRATVRAYGQNVKRLGELAGIQVEVELPQLSNDDAVLAQAGLVLKFNFDQK 823

Query: 259 SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ--KVVLVGIFLAHARLISNTTGFAPI 316
            M                     +     S G+Q  K +++        L+ + +  +  
Sbjct: 824 GMMG-------------------MNDGEASGGQQVMKSLIL-----LIGLMMDESNPSGF 859

Query: 317 LLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
           + +DE  AHLD    + +   +    +Q  +T  +    +
Sbjct: 860 VFIDEPFAHLDIFNIDRVAGFLKATEAQYLITTPNTHNIN 899



 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%)

Query: 18 YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFA 77
          +  L +  DAQ    +G NG GKT +L+A+  L   +   +  Y    R    +F     
Sbjct: 15 WQRLSVPLDAQIVTIIGPNGSGKTTLLDAMRTLLAIKCSGKRDYKRYVRNNKEAFAYLRG 74

Query: 78 RVEGMEG 84
           V+    
Sbjct: 75 VVDNPRR 81


>gi|89091963|ref|ZP_01164918.1| DNA repair protein RecN [Oceanospirillum sp. MED92]
 gi|89083698|gb|EAR62915.1| DNA repair protein RecN [Oceanospirillum sp. MED92]
          Length = 553

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 55/204 (26%), Gaps = 16/204 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +  L I +F     L L      T+  G+ G GK+ +L+A+       +     R  +  
Sbjct: 2   LNQLTIRDFAIVEQLDLELKQGMTVVSGETGAGKSIMLDALGLTLGDRAEAGAVRHGADK 61

Query: 63  DVT--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRVVDELN 117
                     +       +   +   D    L     +  R    IN        V  L 
Sbjct: 62  ADISASFNIDTIPEAAQWLTDNDLDNDGECILRRVITKEGRSRCYINGRPTPAGQVKLLG 121

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRGRNRL 172
           +HL          R+        R  LD                       + ++  +  
Sbjct: 122 EHLIAIHGQHEHQRLLKKD--HHRELLDNFAGEAKLASKVRETYHDWQKLAQELKQLSEQ 179

Query: 173 LTEGYFDSSWCSSIEAQMAELGVK 196
             E        S    ++ +LG++
Sbjct: 180 SAEQTARVQLLSYQIEELDQLGLQ 203


>gi|117928452|ref|YP_873003.1| DNA repair protein RecN [Acidothermus cellulolyticus 11B]
 gi|117648915|gb|ABK53017.1| DNA replication and repair protein RecN [Acidothermus
           cellulolyticus 11B]
          Length = 592

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 79/245 (32%), Gaps = 37/245 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + ++I  L + +        + F    T   G+ G GKT ++  +  L   R      
Sbjct: 1   MLDELRIADLGVID-----EAVVEFSRGLTALTGETGAGKTMVVTGLGLLFGARS----- 50

Query: 61  YADVTRIGSPSFFST-FARVEG---------------MEGLADISIKLETRDDRSVRCLQ 104
              + R G+         R++                 +GL  IS  +   D RS   + 
Sbjct: 51  DPGLVRAGATRAAVDGHVRIQTCPDLLKRVEELGADLDDGLLAISRTI-AADGRSRAQIG 109

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
              V I V+ E  +  R+  +    D+I       +R  LD      D  H+R + ++  
Sbjct: 110 GRPVPISVLAEFGE--RLVAVHGQADQIRLRSPSAQRAALDAFG---DSEHQRILREYRE 164

Query: 165 LMRGRNRLLTE--GYFDSSWCSSIEAQMAELGV-KINIARVE--MINALSSLIMEYVQKE 219
             R  +   +        +     EA+M      ++  ARVE      L   I      +
Sbjct: 165 TYREHSEAASRLDALRSETAQRMREAEMLRFACDEVRRARVEPDEAARLVRDIERLAHAD 224

Query: 220 NFPHI 224
                
Sbjct: 225 ELAEA 229


>gi|325088021|gb|EGC41331.1| DNA repair protein RAD50 [Ajellomyces capsulatus H88]
          Length = 1298

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          KI  L+I   R++    S  + F    T+ VG NG GKT I+E + + + G
Sbjct: 8  KIDKLSILGVRSFDNSRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 58


>gi|283786235|ref|YP_003366100.1| DNA repair protein [Citrobacter rodentium ICC168]
 gi|282949689|emb|CBG89308.1| DNA repair protein [Citrobacter rodentium ICC168]
          Length = 553

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 89/251 (35%), Gaps = 44/251 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + F+  +    L  +    +  D R     ++     R    +N       
Sbjct: 57  TGATRADLCARFSLKDTPAALRWLE-DNQLEDGRECLLRRVISSDGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS 184
                    + + + + R L +++  I  +H  +++    +     + L +GY +     
Sbjct: 110 ---------TAVPLSQLRELGQLLIQIHGQHAHQLL----IKPEHQKSLLDGYANEVLL- 155

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------ 238
                     V+   +R ++ +     +  + Q+      +  L  +   + ++      
Sbjct: 156 ----------VQEMASRYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNEFNPQAG 205

Query: 239 SFCALKEEYAK 249
            F  + EEY +
Sbjct: 206 EFEQIDEEYKR 216


>gi|115524132|ref|YP_781043.1| DNA repair protein RecN [Rhodopseudomonas palustris BisA53]
 gi|115518079|gb|ABJ06063.1| DNA repair protein RecN [Rhodopseudomonas palustris BisA53]
          Length = 560

 Score = 44.1 bits (103), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M  R+ I+ + +        L + F     +  G+ G GK+ +L+A +    GRG     
Sbjct: 1  MLARLSIRDIVL-----IERLDIEFARGLAVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61 YADVTRIGSPSF 72
           + + R G    
Sbjct: 51 DSGLVRHGVEHG 62


>gi|297538572|ref|YP_003674341.1| chromosome segregation protein SMC [Methylotenera sp. 301]
 gi|297257919|gb|ADI29764.1| chromosome segregation protein SMC [Methylotenera sp. 301]
          Length = 1183

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 26/166 (15%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  L ++ F+++     L    Q    VG NG GK+N++E++ ++   S  +  R  S
Sbjct: 1   MRLTHLKLAGFKSFVDPTTLHIHGQRVGVVGPNGCGKSNVMESVRWVLGESSAKEMRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGM-EGLADISIKLETRDDRSVRCLQIND 107
              V   GS +            F ++     G     A+IS+K     D+      IN+
Sbjct: 61  MDAVIFNGSGNRKPISRASVELIFDNSLGGATGEWSQYAEISVKRVIERDKGS-TYYINN 119

Query: 108 VVIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            V+R  D         L           +++RI      E R FL+
Sbjct: 120 TVVRRRDVADLFLGTGLGGRAYAIIGQNTINRIVEAKPEELRIFLE 165



 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 5/120 (4%)

Query: 223  HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
             I     G L   FD++     E +      G+    +    ++             K  
Sbjct: 1018 KIDKETRGRLQATFDEANRHFMELFTTLFGGGQARLELLGEEILDTGMQVFAQPPGKKNS 1077

Query: 283  TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
            TI   S GE+ +  + +  A  RL       AP  L+DE+ A LD+        +V  + 
Sbjct: 1078 TIHLLSGGEKALTALALVFALFRL-----NPAPFCLMDEVDAPLDDSNTERFCSMVKKMS 1132


>gi|323341753|ref|ZP_08081986.1| hypothetical protein HMPREF0357_10166 [Erysipelothrix
          rhusiopathiae ATCC 19414]
 gi|322464178|gb|EFY09371.1| hypothetical protein HMPREF0357_10166 [Erysipelothrix
          rhusiopathiae ATCC 19414]
          Length = 684

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + IK + I  ++     +R+    +    VG N  GKT I+EAI     G
Sbjct: 1  MIIKEIEIENYKGITDKVRISIGRKIVPIVGMNESGKTTIIEAIYAFDNG 50


>gi|226951817|ref|ZP_03822281.1| recombination and DNA repair protein [Acinetobacter sp. ATCC 27244]
 gi|226837357|gb|EEH69740.1| recombination and DNA repair protein [Acinetobacter sp. ATCC 27244]
          Length = 553

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 28/158 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L L  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLALDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IG----------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV- 109
            G                + + + T   +E   G   +   +            IN    
Sbjct: 57  YGADKADVTAVFSYQPDSAEAHWLTEHELEDDTGEIHLRRVVFATGRSK---AWINGRPS 113

Query: 110 -IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146
            +  + E+ + L   +   S  ++        + +LDR
Sbjct: 114 SLAELKEIGRLLVQLYSQHSQQQLLE--PPYPKHWLDR 149


>gi|224009910|ref|XP_002293913.1| chromosome condensation protein-like protein [Thalassiosira
          pseudonana CCMP1335]
 gi|220970585|gb|EED88922.1| chromosome condensation protein-like protein [Thalassiosira
          pseudonana CCMP1335]
          Length = 1268

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 7  IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYA 62
          I  + +  F++YA L+    F    +  VG NG GK+N+++A+ F+     +  R    +
Sbjct: 2  ITKMELENFKSYAGLKQIGPFHKCFSSVVGPNGSGKSNVIDAMLFVFGKRAKKLRLNKVS 61

Query: 63 DVTR 66
          ++  
Sbjct: 62 ELIH 65


>gi|260460905|ref|ZP_05809155.1| AAA ATPase [Mesorhizobium opportunistum WSM2075]
 gi|259033482|gb|EEW34743.1| AAA ATPase [Mesorhizobium opportunistum WSM2075]
          Length = 260

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 7/49 (14%)

Query: 15 FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS------PGRGFR 57
          FR   +  L F    TI VG+NG GK+ +LEAI  L+       G+G+R
Sbjct: 38 FRG-RAFELEFTTPITIIVGENGTGKSTLLEAIGALAGYDEAGGGKGYR 85


>gi|194289236|ref|YP_002005143.1| recombination and repair protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193223071|emb|CAQ69076.1| recombination and repair protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 583

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 38/212 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F    +L L F +  T+F G+ G GK+ +++A++ +   R     + A V R
Sbjct: 2   LRSLSIRDFVIVDTLDLDFASGFTVFTGETGAGKSILIDALALVLGER-----ADAGVVR 56

Query: 67  IGS---------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI- 110
            G+                ++ +        +G     +   T D        IN     
Sbjct: 57  EGAPRASVSATFSTHPALDAWLAERELNSEEDGGVPTVLLRRTVDAGGRSKAFINGAAAT 116

Query: 111 ---------RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
                    ++VD   +H     L P   R+               +             
Sbjct: 117 LAQLREVGDQLVDIHGQHAHQQLLRPDAQRLLFDA--------HAGLTQQAAAVAEAWRA 168

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL 193
           +   +R R  +  +          +E Q+ EL
Sbjct: 169 WRACVRQREAVEHQSREMQLERERLEWQVGEL 200


>gi|260774480|ref|ZP_05883394.1| hypothetical protein VIB_002961 [Vibrio metschnikovii CIP 69.14]
 gi|260610607|gb|EEX35812.1| hypothetical protein VIB_002961 [Vibrio metschnikovii CIP 69.14]
          Length = 252

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 273 LIVDYCDKAITIAH-GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           L +   DK   I    S GEQK + +  FLA              ++ D+    LD   R
Sbjct: 2   LKIRLTDKTNGITDVASEGEQKCIALAGFLAEL----TVDNRKSAIIFDDPINSLDHRWR 57

Query: 332 NALFRIVTD--IGSQIFMTGTDKSVFDSLNET 361
                 +    +  Q+ +   D S    L E+
Sbjct: 58  RLFADRIAQEALTRQVIVFTHDMSFLKMLEES 89


>gi|195068516|ref|XP_001996924.1| GH23715 [Drosophila grimshawi]
 gi|193891380|gb|EDV90246.1| GH23715 [Drosophila grimshawi]
          Length = 1035

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 7/111 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASY 61
           +IK +   +F +Y+ +         +  G NG GK+ I+ AI  L  G       R +S 
Sbjct: 15  RIKSVYCKDFVSYSEITFFPKEYLNVLTGPNGTGKSTIVSAI-ILGLGGEPQLLKRSSSI 73

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
           +D  +  S S  +    V G    +  + K    D+   R   +N   +  
Sbjct: 74  SDYIKS-SKSTATVIITVYGRGNNSTEAFKRIISDNGQSRYF-VNSKELSK 122


>gi|297582105|ref|ZP_06944023.1| ATPase [Vibrio cholerae RC385]
 gi|297533625|gb|EFH72468.1| ATPase [Vibrio cholerae RC385]
          Length = 329

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
           L +  F  + S  L F     +F+G+NG GKT++++ +  +
Sbjct: 4  KLVLDSFGAFQSAELQFSKGLNVFIGENGTGKTHLMKLMYCM 45


>gi|220931501|ref|YP_002508409.1| DNA repair protein RecN [Halothermothrix orenii H 168]
 gi|219992811|gb|ACL69414.1| DNA repair protein RecN [Halothermothrix orenii H 168]
          Length = 565

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70
           +  F     L L F     +  G+ G GK+ I+ A+  L   R     + +D+ R G  
Sbjct: 6  RVKNFILIDRLELEFGRGLNVLTGETGAGKSMIIGALEVLLGAR-----ATSDLIRRGQD 60

Query: 71 SFFSTFA 77
                 
Sbjct: 61 RAIIEAV 67


>gi|126458904|ref|YP_001055182.1| hypothetical protein Pcal_0279 [Pyrobaculum calidifontis JCM
          11548]
 gi|126248625|gb|ABO07716.1| conserved hypothetical protein [Pyrobaculum calidifontis JCM
          11548]
          Length = 278

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASY 61
          ++I+ + + +F       +      T+  G NG GK++++  ++ L         R    
Sbjct: 1  MRIERVCLRDFLAVGGQCVEVG-GPTLLYGPNGAGKSSLILGVAALLYAISGGVLRGLVP 59

Query: 62 ADV---TRIGSPSFFSTFARVEGMEGLADIS 89
           ++    R G+ +  +  A V+G     +I 
Sbjct: 60 DNLALWVRRGAEAG-AVEAVVDGRRYRLEIG 89


>gi|154416624|ref|XP_001581334.1| SMC flexible hinge domain protein [Trichomonas vaginalis G3]
 gi|121915560|gb|EAY20348.1| SMC flexible hinge domain protein, putative [Trichomonas
          vaginalis G3]
          Length = 1135

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + IS F+ +A   +   F       +G NG GKT + +AI F
Sbjct: 1  MNIKKVVISGFKAFADTTIFGPFSPGKNCILGLNGSGKTTLFQAIEF 47



 Score = 39.5 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 23/179 (12%)

Query: 196  KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
            +I+ +R  +I  +S L  +          KLS   F D           +   ++     
Sbjct: 942  EIDDSRKSLIELISELDSKKRSAFESFFAKLSYH-FKDIYHKLEPTRNCQIVLQRESSNL 1000

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
              +  +    +     D  +            S G++ +  +   LA        T   P
Sbjct: 1001 GQEEETPLKGVAFRFDDFFI---------EQMSGGQKTICAISFLLA-----IQKTTPTP 1046

Query: 316  ILLLDEISAHLDEDKRNALFRIVTDI-----GSQIFMTGTDKSVFDSLNETAKFMRISN 369
              L DEI A LD   R  L  +++++      SQ   +       + L  + KF  ISN
Sbjct: 1047 FYLFDEIDADLDPQHRKNLSEVISEMANADPPSQFIFST---FRPEMLEVSDKFFGISN 1102


>gi|114576261|ref|XP_001136387.1| PREDICTED: structural maintenance of chromosomes protein 6 isoform
           7 [Pan troglodytes]
 gi|114576265|ref|XP_001136300.1| PREDICTED: SMC6 protein isoform 6 [Pan troglodytes]
 gi|114576267|ref|XP_001136212.1| PREDICTED: SMC6 protein isoform 5 [Pan troglodytes]
 gi|114576271|ref|XP_001136059.1| PREDICTED: structural maintenance of chromosomes protein 6 isoform
           3 [Pan troglodytes]
 gi|114576273|ref|XP_001136130.1| PREDICTED: SMC6 protein isoform 4 [Pan troglodytes]
          Length = 1091

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 18/100 (18%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ +++  F  ++ L    F +     VG+NG GK+ +L A+     GR     R +S  
Sbjct: 48  IESIHLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNRGSSLK 107

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
              + G  S              ADISI L  R D + + 
Sbjct: 108 GFVKDGQNS--------------ADISITLRNRGDDAFKA 133


>gi|28375555|emb|CAD66601.1| SMC protein [Methylococcus capsulatus]
          Length = 1169

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          ++++ L I+ F+++     L         VG NG GK+N+++A+ ++   S  R  R  +
Sbjct: 1  MRLEKLKIAGFKSFVDPTTLPLPGNLVGVVGPNGCGKSNVIDAVRWVMGESSARHLRGET 60

Query: 61 YADVTRIGS 69
           ADV   GS
Sbjct: 61 MADVIFNGS 69



 Score = 36.4 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 66/188 (35%), Gaps = 30/188 (15%)

Query: 184  SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
            S+ +A +  LG +I       + A+     +  ++         LT  L    +Q+   +
Sbjct: 950  SAWQASVIRLGEEIERLGPVNLTAMQEYQEQEARQRYLEEQDRDLTESL-ATLEQAIEKI 1008

Query: 244  KEEYAKKLFDGRKMDSMSRRT-----LIGPHRSDLIVDYCD---------------KAIT 283
              E   +  +  +    +        L G  ++ L +   +               +  +
Sbjct: 1009 DRECRARFKETFEK-INAGFQRMFPKLFGGGKAALELTENNLLSAGVSVMAQPPGKRNSS 1067

Query: 284  IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
            I   S GE+ +    +  A   L       AP  LLDE+ A LD+       ++V ++  
Sbjct: 1068 IHLLSGGEKALTAAALVFAIFEL-----NPAPFCLLDEVDAPLDDANVGRFSQLVKEMSE 1122

Query: 344  QI---FMT 348
            ++   F+T
Sbjct: 1123 KVQFLFIT 1130


>gi|238504128|ref|XP_002383296.1| DNA repair protein Rad50 [Aspergillus flavus NRRL3357]
 gi|83764631|dbj|BAE54775.1| unnamed protein product [Aspergillus oryzae]
 gi|220690767|gb|EED47116.1| DNA repair protein Rad50 [Aspergillus flavus NRRL3357]
          Length = 1326

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          K+  L +  F N  S  + F    T+ VG NG GKT I+E + + + G
Sbjct: 14 KLSILGVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 61


>gi|13375848|ref|NP_078900.1| structural maintenance of chromosomes protein 6 [Homo sapiens]
 gi|214010216|ref|NP_001135758.1| structural maintenance of chromosomes protein 6 [Homo sapiens]
 gi|122070455|sp|Q96SB8|SMC6_HUMAN RecName: Full=Structural maintenance of chromosomes protein 6;
           Short=SMC protein 6; Short=SMC-6; Short=hSMC6
 gi|12052726|emb|CAB66479.1| hypothetical protein [Homo sapiens]
 gi|24980982|gb|AAH39828.1| Structural maintenance of chromosomes 6 [Homo sapiens]
 gi|52545748|emb|CAH56327.1| hypothetical protein [Homo sapiens]
 gi|62630105|gb|AAX88851.1| unknown [Homo sapiens]
 gi|117646594|emb|CAL37412.1| hypothetical protein [synthetic construct]
 gi|119621271|gb|EAX00866.1| SMC6 structural maintenance of chromosomes 6-like 1 (yeast),
           isoform CRA_a [Homo sapiens]
 gi|119621272|gb|EAX00867.1| SMC6 structural maintenance of chromosomes 6-like 1 (yeast),
           isoform CRA_a [Homo sapiens]
 gi|119621273|gb|EAX00868.1| SMC6 structural maintenance of chromosomes 6-like 1 (yeast),
           isoform CRA_a [Homo sapiens]
 gi|158258274|dbj|BAF85110.1| unnamed protein product [Homo sapiens]
 gi|208965582|dbj|BAG72805.1| protein for structural maintenance of chromosomes 6 [synthetic
           construct]
          Length = 1091

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 18/100 (18%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ +++  F  ++ L    F +     VG+NG GK+ +L A+     GR     R +S  
Sbjct: 48  IESIHLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNRGSSLK 107

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
              + G  S              ADISI L  R D + + 
Sbjct: 108 GFVKDGQNS--------------ADISITLRNRGDDAFKA 133


>gi|328707330|ref|XP_003243363.1| PREDICTED: structural maintenance of chromosomes protein 4-like
           isoform 2 [Acyrthosiphon pisum]
 gi|328707332|ref|XP_001948250.2| PREDICTED: structural maintenance of chromosomes protein 4-like
           isoform 1 [Acyrthosiphon pisum]
          Length = 1358

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 3   NRIKIKFLNISEFRNY-ASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
            R+ I  +  + F++Y   + +  F    T  VG NG GK+N+++++ F+   R 
Sbjct: 65  PRMVITEIVANNFKSYFGEVTIGKFHKSLTSIVGANGSGKSNVIDSLLFVFGYRS 119


>gi|325107990|ref|YP_004269058.1| hypothetical protein Plabr_1424 [Planctomyces brasiliensis DSM 5305]
 gi|324968258|gb|ADY59036.1| hypothetical protein Plabr_1424 [Planctomyces brasiliensis DSM 5305]
          Length = 1043

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 38/302 (12%)

Query: 78   RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL--------------RIS 123
            R +      ++   LE    ++    + N   ++   EL   L                 
Sbjct: 744  RKDLEFAEHELVELLERGHAKTPEQFRRNAGKLQRGRELRALLADINDQLTSLSREEPEL 803

Query: 124  WLVPSMDRIFSGL-SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW 182
             +V    + F+G  + ER   +   +  ++              R R     E       
Sbjct: 804  AIVEEDLKTFNGQQAQERIDLIGMELEDLE--------------RDREECSEELGRARQR 849

Query: 183  CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCA 242
             +++E++ A     +   R  +++       +++  E        +T   + +F     A
Sbjct: 850  LTALESETA--AADLQTRRERLLDQARMTASDWLATEAAGRTFSDMTATFEERFQPETLA 907

Query: 243  LKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLA 302
                Y  +L  GR       RT  G  R  ++ +       ++  S G ++ + + I LA
Sbjct: 908  RASHYLNELTLGRY---EQVRTPFG-SRELIVHERSGATRQVSELSDGTREQLFLAIRLA 963

Query: 303  HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNE 360
               +++        ++LD+I  + D+ +  A    + D     Q+      + +      
Sbjct: 964  LVDMLAEE-QTVLPMVLDDICVNFDQQRTEAAVSTILDFAERRQVLFFTCHEHLAQMFQH 1022

Query: 361  TA 362
              
Sbjct: 1023 RG 1024


>gi|256852159|ref|ZP_05557545.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260661808|ref|ZP_05862719.1| DNA repair ATPase [Lactobacillus jensenii 115-3-CHN]
 gi|297205676|ref|ZP_06923072.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16]
 gi|256615205|gb|EEU20396.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260547555|gb|EEX23534.1| DNA repair ATPase [Lactobacillus jensenii 115-3-CHN]
 gi|297150254|gb|EFH30551.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16]
          Length = 805

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 76/217 (35%), Gaps = 19/217 (8%)

Query: 159 MIDFERLMRGRNR----LLTEGYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSL 211
               +  ++ +N      L +   +++         A    +I   + E+      L++ 
Sbjct: 598 WQQKKDALKKQNHQLELYLAKLNQNAAEIKVKMENFA-NSDEIERQKQELETTNTQLNTA 656

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
             +Y+       I         G+         +EY   L +G        +T+   +R+
Sbjct: 657 TSKYLAYILASRIITRALDIASGERLPKMLVASQEYFTLLTNGNYQAINFGKTIKVTNRT 716

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
                   K I I + S   ++ +   + LA A+ I +       +L+D+   + D  + 
Sbjct: 717 -------GKKIEIKYLSRATKEQLYFALKLAFAKQIQDDINLP--ILIDDSFVNFDHGRT 767

Query: 332 NALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMR 366
             + +++  +   SQI +    KS+ ++L +      
Sbjct: 768 ENIIKLLEQLAQESQIIIFTARKSLANALTKHVLTFE 804



 Score = 38.3 bits (88), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +K+  + I  F   ++L     ++   +F G N  GK+  +  I  +  G   R +    
Sbjct: 2   MKLTKIKIIHFGKLSNLTFSLPSKEINVFFGQNEAGKSTTVAFIKQILFGFYLRSSKSPF 61

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  + SP   S F  ++G E   +       +  +    ++ +  ++      +
Sbjct: 62  FEEYEPLAAV-SPMGGSLFFELDGSEFELERLWAKGDKSKKGTLTVKKDGHIVPESLFFD 120

Query: 118 KHLRISWLVPSMDRIFS 134
           +   I     +   IF+
Sbjct: 121 QIQNIDGSFYADSFIFN 137


>gi|227873759|ref|ZP_03991988.1| conserved hypothetical protein [Oribacterium sinus F0268]
 gi|227840375|gb|EEJ50776.1| conserved hypothetical protein [Oribacterium sinus F0268]
          Length = 711

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 9/163 (5%)

Query: 202 VEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
           +E +     L+ +  ++      + +L        + +      +Y + + +  +    S
Sbjct: 551 LEFLEEQERLLEQKKEEREALEKRYNLLQKTKAYLEMAKERFALQYKEPILEAFQKYFQS 610

Query: 262 RRT--LIGPHRSDLIVDYCDKAITIAHG--STGEQKVVLVGIFLAHARLISNTTGFAPIL 317
             T  L      DL + + D+ ++   G  S G Q +      LA    +         L
Sbjct: 611 ICTEPLQFQMSEDLELSFVDRGLSREQGYLSEGLQDLCRFCQKLAIFDAMFRE--EKAFL 668

Query: 318 LLDEISAHLDED---KRNALFRIVTDIGSQIFMTGTDKSVFDS 357
           LLD+  +HLDE    +  AL   +       + T +++     
Sbjct: 669 LLDDPFSHLDEKNGARARALLEELAKSRQIFYFTCSEERKLSD 711



 Score = 36.4 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          + I+  +I++F  +      F      F+ DNG GKT+ +
Sbjct: 1  MIIEACHIAQFGKWKDADFSFSPGKNSFLWDNGYGKTSFI 40


>gi|207343115|gb|EDZ70677.1| YLR086Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 754

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 4   RIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
           R+ I  L +  F++YA  ++   F    +  VG NG GK+N+++++ F+   R    R+ 
Sbjct: 153 RLFINELVLENFKSYAGKQVVGPFHTSFSAVVGPNGSGKSNVIDSMLFVFGFRANKMRQD 212

Query: 60  SYADVTR 66
             +D+  
Sbjct: 213 RLSDLIH 219


>gi|145299907|ref|YP_001142748.1| recombination and repair protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852679|gb|ABO91000.1| DNA repair protein RecN [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 554

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 62/241 (25%), Gaps = 34/241 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L ++ F     L L      T   G+ G GK+  ++A+      R     + A + R
Sbjct: 2   LTQLTVNNFAIVKFLELDLQPGMTCITGETGAGKSIAIDALGLCLGER-----AEASMVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVRCL-QINDVVI--RV 112
             S     +            A +   E   +    +        R    IN V +    
Sbjct: 57  PDSDKTEVSARFLLDGNPAARAWLAANELENEGECIVRRVLSAEGRSRSYINGVPVPLTQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           +  L + L       +   +       +   LD             +    +L R     
Sbjct: 117 LKNLGQLLVNVHGQHAHQLLLK--PDYQLSLLDGYAGH--HLLLEEVRQHYQLWRQLQNE 172

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           L     +     +   Q+ E            +  L    ++  + E        L    
Sbjct: 173 LNRLKAEQQQREA-RRQLIEY----------QVQELDEFALQPGEFEAIEEEHQRLANGT 221

Query: 233 D 233
           +
Sbjct: 222 E 222


>gi|145299212|ref|YP_001142053.1| ATP-dependent endonuclease [Aeromonas salmonicida subsp.
          salmonicida A449]
 gi|142851984|gb|ABO90305.1| predicted ATP-dependent endonuclease of the OLD family [Aeromonas
          salmonicida subsp. salmonicida A449]
          Length = 545

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ + +  FR    L L  D   T+ +G+N  GK+++L A+  L
Sbjct: 1  MFLERIEVKGFRGINRLSLGLD-NTTVLIGENAWGKSSLLRALWCL 45


>gi|24497433|ref|NP_722503.1| structural maintenance of chromosomes protein 5 [Mus musculus]
 gi|23468222|gb|AAH38345.1| Structural maintenance of chromosomes 5 [Mus musculus]
          Length = 1087

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 84/308 (27%), Gaps = 49/308 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y    +       + +G NG GK++I+ AI     G+         V  
Sbjct: 53  IVRIAMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 112

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN   +  ++V+E    L I  
Sbjct: 113 FVKRGCSKGLVEIELFRTSGNLIITREIDVIKNQSFWFINKKPVTQKIVEEQVAALNIQV 172

Query: 125 -----LVPSM----------DRIFS------GLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                 +P              +        G     R   +          R +    E
Sbjct: 173 GNLCQFLPQDKVGEFAKLSKIELLEATEKSVGPPEMHRYHCEL------KNFREKEKQLE 226

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
              + +   L +    +              V+    R   ++ L  ++        + +
Sbjct: 227 TSCKEKTEYLEKMVQRNERYKQ--------DVERFYERKRHLD-LIEMLEAKRPWVEYEN 277

Query: 224 IKLSLTG--FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           ++    G   +  +  +    LKE          ++D           R  L V   +K+
Sbjct: 278 VRQEYEGVKLIRDRVKEEVRKLKEGQIPMTRRIEEIDR---------QRHTLEVRIKEKS 328

Query: 282 ITIAHGST 289
             I   S 
Sbjct: 329 TDIKEASQ 336


>gi|30250214|ref|NP_842284.1| chromosome segregation ATPase [Nitrosomonas europaea ATCC 19718]
 gi|30181009|emb|CAD86196.1| Chromosome segregation ATPases [Nitrosomonas europaea ATCC 19718]
 gi|42627761|tpe|CAD66176.1| TPA: SMC protein [Nitrosomonas europaea]
          Length = 1175

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTI-FVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + ++ F+ +    +V    + +  VG NG GK+N+++A+ ++   S     R  S
Sbjct: 1  MRLTEIKLAGFKTFVDPAVVPVPGNLVGIVGPNGCGKSNVIDAVRWVLGESRASALRGES 60

Query: 61 YADVTRIGSP 70
            DV   GS 
Sbjct: 61 LQDVIFNGSA 70


>gi|318041988|ref|ZP_07973944.1| putative DNA repair ATPase [Synechococcus sp. CB0101]
          Length = 910

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +++    +   R + +L L F  Q T+  G N  GK+ ++EA+      R
Sbjct: 1  MRLIACTLQNVRRHRALELHFGRQLTLIAGANESGKSTLVEALHKALFLR 50



 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 68/203 (33%), Gaps = 23/203 (11%)

Query: 167 RGRNRLLTEGYFDSSW---CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
           + R + L      +      ++ E   AE   +    R + +  L               
Sbjct: 695 QQRTQSLGANNPLAELEQRQATWEE--AEADRRSIEQRGQALRLLLDRFH---------- 742

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
              S    L  ++ +   A    Y   L D      ++     G H  +L +   D+A  
Sbjct: 743 ---STQSNLANRYSEPLRAAIAPYLAALADEPHQPLLAFDPQQGFH--NLQLRQGDEAFA 797

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT---D 340
               S G ++ +   + LA A ++    G    L+ D+   + D +++  L R++     
Sbjct: 798 FERLSGGMREQLAATVRLAMAEVLKPAYGDVLPLVFDDAFTNSDRERQQGLRRMLERGMQ 857

Query: 341 IGSQIFMTGTDKSVFDSLNETAK 363
            G QI +     S +  L +  +
Sbjct: 858 QGIQIVLLTCHPSDYTPLLDEGQ 880


>gi|288904653|ref|YP_003429874.1| hypothetical protein GALLO_0437 [Streptococcus gallolyticus
          UCN34]
 gi|288731378|emb|CBI12929.1| hypothetical protein, phage associated [Streptococcus
          gallolyticus UCN34]
          Length = 430

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 7  IKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          I  L I   +   ++++   A   T+  G+N  GKT++L++I++   G  ++ +    
Sbjct: 4  INKLEIENVKRIKAVKIEPSASGLTVIGGNNNQGKTSVLDSIAWALGGNKYKPSKAER 61


>gi|157823069|ref|NP_001099827.1| structural maintenance of chromosomes protein 5 [Rattus norvegicus]
 gi|149062592|gb|EDM13015.1| SMC5 structural maintenance of chromosomes 5-like 1 (yeast)
           (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 1064

 Score = 44.1 bits (103), Expect = 0.038,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 89/297 (29%), Gaps = 27/297 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y    +       + +G NG GK++I+ AI     G+         V  
Sbjct: 53  IVRIAMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 112

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN   +  ++V+E    L I  
Sbjct: 113 FVKRGCSKGLVEIELFRTSGNLIITREIDVIKNQSFWFINKKPVTQKIVEEQVAALNIQV 172

Query: 125 -----LVPSM--DRIFSGLSMERRRFLDRMVFAID-PRHRRRMIDFERLMRGRNRLLTEG 176
                 +P            +E     ++ +   +  R+   + +F    +       E 
Sbjct: 173 GNLCQFLPQDKVGEFAKLSKIELLEATEKSIGPPEMHRYHCELKNFREKEKQLETSCKEK 232

Query: 177 YFDSSWCSSIEAQMAEL--GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FL 232
              + +   +  +       V+    R   ++ L  ++        + +++    G   +
Sbjct: 233 ---TEYLDKMIQRNERYKQDVERFYERKRHLD-LIEMLEAKRPWVEYENVRQEYEGVKLV 288

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
             +  +    LKE          +++   R          L V   +KA  I   S 
Sbjct: 289 RDRVKEEVRKLKEGQIPMTRRIEEIERQRRT---------LEVRIKEKATDIKEASQ 336


>gi|282933669|ref|ZP_06339028.1| DNA repair ATPase [Lactobacillus jensenii 208-1]
 gi|281302202|gb|EFA94445.1| DNA repair ATPase [Lactobacillus jensenii 208-1]
          Length = 804

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 76/217 (35%), Gaps = 19/217 (8%)

Query: 159 MIDFERLMRGRNR----LLTEGYFDSSWCSSIEAQMAELGVKINIARVEM---INALSSL 211
               +  ++ +N      L +   +++         A    +I   + E+      L++ 
Sbjct: 597 WQQKKDALKKQNHQLELYLAKLNQNAAEIKVKMENFA-NSDEIERQKQELETTNTQLNTA 655

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
             +Y+       I         G+         +EY   L +G        +T+   +R+
Sbjct: 656 TSKYLAYILASRIITRALDIASGERLPKMLVASQEYFTLLTNGNYQAINFGKTIKVTNRT 715

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
                   K I I + S   ++ +   + LA A+ I +       +L+D+   + D  + 
Sbjct: 716 -------GKKIEIKYLSRATKEQLYFALKLAFAKQIQDDINLP--ILIDDSFVNFDHGRT 766

Query: 332 NALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMR 366
             + +++  +   SQI +    KS+ ++L +      
Sbjct: 767 ENIIKLLEQLAQESQIIIFTARKSLANALTKHVLTFE 803



 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 50/137 (36%), Gaps = 8/137 (5%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRAS--- 60
           +K+  + I  F   ++L     ++   +F G N  GK+  +  I  +  G   R +    
Sbjct: 1   MKLTKIKIIHFGKLSNLTFSLPSKEINVFFGQNEAGKSTTVAFIKQILFGFYLRSSKSPF 60

Query: 61  ---YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
              Y  +  + SP   S F  ++G E   +       +  +    ++ +  ++      +
Sbjct: 61  FEEYEPLAAV-SPMGGSLFFELDGSEFELERLWAKGDKSKKGTLTVKKDGHIVPESLFFD 119

Query: 118 KHLRISWLVPSMDRIFS 134
           +   I     +   IF+
Sbjct: 120 QIQNIDGSFYADSFIFN 136


>gi|289432438|ref|YP_003462311.1| SMC domain protein [Dehalococcoides sp. GT]
 gi|288946158|gb|ADC73855.1| SMC domain protein [Dehalococcoides sp. GT]
          Length = 859

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 74/250 (29%), Gaps = 32/250 (12%)

Query: 9   FLNISEFRNYASLRLVFDAQ---HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            L I  F  Y      F           G NG GK+ +++AI++   G+  R  S  DV 
Sbjct: 5   KLKIKNFMCYRGEIPPFSFNGIHTACICGQNGAGKSALIDAITWALWGKS-RAKSDDDVI 63

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            +       +      ++      +    R  +  +    N                   
Sbjct: 64  SLNEQEAEVS------LDFEISGELYQVIRQRQRPKKAGANGQ----------------- 100

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM-IDFERLMRGRNRLLTEGYFDSSWCS 184
             S+  +FS    + R      +   + +    + +D++  +   +  L +G+ +     
Sbjct: 101 --SLLSLFSLQDEKPRNITGDTLTQTEKKIISILHMDYDTFI--NSAFLRQGHANQFTQQ 156

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               +   L   + +   + +  L+   +   + +N    +    G    K         
Sbjct: 157 PPGKRKEVLANILGLEIYDQLEDLARQAVREAEAKNLQIEQSIEDGKESLKSRPELEEAL 216

Query: 245 EEYAKKLFDG 254
               K L +G
Sbjct: 217 NHTRKDLAEG 226


>gi|169334429|ref|ZP_02861622.1| hypothetical protein ANASTE_00829 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259146|gb|EDS73112.1| hypothetical protein ANASTE_00829 [Anaerofustis stercorihominis DSM
           17244]
          Length = 565

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 98/305 (32%), Gaps = 35/305 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +  LNI+ +     L + FD    I  G+ G GK+ I+ A+S +    +     R     
Sbjct: 2   LLSLNINNYAIIDKLSIDFDEGLNIITGETGAGKSIIIGALSLVLGEHAKLENIRTGQDK 61

Query: 63  DVTRI----GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRVVDE 115
              +        S        +     +D ++ L        R + ++N+  V +  + E
Sbjct: 62  ANIQALFTVDDNSLELKKVLDDLSIDYSDGTLILYREISSKGRNICRVNNSLVNVSTLKE 121

Query: 116 LNKHLRISWLVPSMDRIFSG------LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
           +  HL          ++ +       L       ++  +  ++  +      +++  +  
Sbjct: 122 IGTHLIDIHGQHEHQKLLNQHTHLSFLDAYGNNLINDDLENVERSYFE----YKKAEKDF 177

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGV--------KINIARVEMINALSSLIMEYVQKENF 221
             + ++   +      +  Q  E+          +    R +++   S  I  Y+     
Sbjct: 178 KSIKSKAKENEDNLDLLTRQFKEIDEVELEIGEDEALSKREKLLLN-SQNIYNYIDGAYS 236

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
              K      ++    +   +  E +   + +  +M     +TLI     ++I    D  
Sbjct: 237 LLYKNENNVSINLAEAEKMFSEVERFDDSVKESIEM-LSEGKTLI----DEVIFFLRDYR 291

Query: 282 ITIAH 286
            +I  
Sbjct: 292 DSITF 296


>gi|168705349|ref|ZP_02737626.1| SMC protein-like protein [Gemmata obscuriglobus UQM 2246]
          Length = 264

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISF 49
           L F  + T FVG+NG GK+ +LEA++ 
Sbjct: 42 TLEFHPRVTFFVGENGAGKSTLLEAVAV 69


>gi|153953563|ref|YP_001394328.1| ATP-binding protein [Clostridium kluyveri DSM 555]
 gi|219854185|ref|YP_002471307.1| hypothetical protein CKR_0842 [Clostridium kluyveri NBRC 12016]
 gi|146346444|gb|EDK32980.1| Predicted ATP-binding protein [Clostridium kluyveri DSM 555]
 gi|219567909|dbj|BAH05893.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 244

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISF 49
          L F  + T  VG+NG GK+ ILEAI+ 
Sbjct: 39 LEFHPKVTYIVGENGTGKSTILEAIAV 65


>gi|76661227|ref|XP_587519.2| PREDICTED: SMC6 protein isoform 1 [Bos taurus]
 gi|297480590|ref|XP_002691521.1| PREDICTED: structural maintenance of chromosomes 6 [Bos taurus]
 gi|296482356|gb|DAA24471.1| structural maintenance of chromosomes 6 [Bos taurus]
          Length = 1092

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 18/99 (18%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 49  IESIQLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAITTNRGSSLK 108

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101
              + G  S              ADISI +  R D + R
Sbjct: 109 GFVKDGQNS--------------ADISITIRNRGDDAYR 133


>gi|163847460|ref|YP_001635504.1| AAA ATPase [Chloroflexus aurantiacus J-10-fl]
 gi|222525311|ref|YP_002569782.1| AAA ATPase [Chloroflexus sp. Y-400-fl]
 gi|163668749|gb|ABY35115.1| AAA ATPase [Chloroflexus aurantiacus J-10-fl]
 gi|222449190|gb|ACM53456.1| AAA ATPase [Chloroflexus sp. Y-400-fl]
          Length = 570

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +  L I  F+ +  + +    +  IF+G N  GKT+ L+A++ 
Sbjct: 2  LTKLTIRNFKLFTDVEIELGERV-IFIGPNNSGKTSALQALAL 43


>gi|326330319|ref|ZP_08196629.1| urea ABC transporter, ATP-binding protein UrtD [Nocardioidaceae
           bacterium Broad-1]
 gi|325951856|gb|EGD43886.1| urea ABC transporter, ATP-binding protein UrtD [Nocardioidaceae
           bacterium Broad-1]
          Length = 255

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 16/128 (12%)

Query: 5   IKIKFLNISEFR-------NYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRG- 55
           + ++ L +S+ R           + L  +       +G NG GKT +++A++ L+ G G 
Sbjct: 1   MTVETLQVSDLRVEFDGFVAIDGVSLTLEPGRLHFLIGPNGAGKTTLVDALTGLAKGSGE 60

Query: 56  --FRRASY-----ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             +R           +TR+G    F T    E +  L ++ I       R    L    +
Sbjct: 61  ARYRTRDLLALASHRITRLGVGRTFQTATVFEELSVLQNLDIAAGVHRARWRLMLPRRGM 120

Query: 109 VIRVVDEL 116
             +V + L
Sbjct: 121 PEQVAEVL 128


>gi|288870134|ref|ZP_06409643.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
 gi|288868252|gb|EFD00551.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
          Length = 626

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 108/324 (33%), Gaps = 35/324 (10%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
            +R+KI  + I+ F  +    L F+    I  G N  GK+     I     G  F     
Sbjct: 4   ADRMKILDIYINGFGKFHGRNLSFEDGLNIVYGKNEAGKST----IHTFIRGMLF--GIE 57

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDD--RSVRCLQINDVVIRVVDELNK- 118
               R      +S F   E   G  +  ++LE +D   R  R  Q N    +VVDE    
Sbjct: 58  KQRGRASRNDLYSKFEPWEN-SGTYEGQLRLEHKDHIYRIERTFQKNKKEFKVVDETAGR 116

Query: 119 -HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
                   +  +    S  +      + ++  A D      + ++   +     +     
Sbjct: 117 EIEPTKAFLDDLLSGLSETAYNNTVSIGQLKSATDEGMVSELKNYIANLNTTGNIALNIT 176

Query: 178 FDSSWCSS----IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
             +S+  S    +E+QM     +       +++ + +   E    E    I+      ++
Sbjct: 177 KATSFLKSQHKELESQMVPEAAR---TYTSLLSEIRNTEKEIASPEYENQIQAYQRIRVE 233

Query: 234 GKFD-QSFCALKEEYAKKLFDGRK---------MDSMSRRTLIGPHRSDLIVDYCDKAIT 283
            K   +     KEE  +K+  G++          DS++  ++      D   +       
Sbjct: 234 VKDTLEVKQKEKEELIQKVARGKQVLANNQFTDQDSITAYSIKTQGTFDEYTE------A 287

Query: 284 IAHGSTGEQKVV-LVGIFLAHARL 306
                   +K++ ++ + +A   L
Sbjct: 288 KEVCGRKSKKILSVLSLVIATLLL 311


>gi|260891416|ref|ZP_05902679.1| conserved hypothetical protein [Leptotrichia hofstadii F0254]
 gi|260858799|gb|EEX73299.1| conserved hypothetical protein [Leptotrichia hofstadii F0254]
          Length = 378

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ-----HTIFVGDNGVGKTNILEAIS 48
          +KIK L I   +   +L + F+         +  G NG+GKT +LE IS
Sbjct: 1  MKIKNLYIENEKRLKNLNINFENNGKILDVVVLAGINGMGKTTVLEVIS 49


>gi|257084618|ref|ZP_05578979.1| predicted protein [Enterococcus faecalis Fly1]
 gi|256992648|gb|EEU79950.1| predicted protein [Enterococcus faecalis Fly1]
          Length = 755

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 6  KIKFLNISEFRNY---ASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPG 53
          KI  + IS  RN      L      Q  TI  G NG GKT   +AI  L  G
Sbjct: 7  KINNVEISNLRNIPYDKPLTFELSKQMITILDGPNGYGKTTFFDAIELLITG 58


>gi|148709652|gb|EDL41598.1| mCG5312, isoform CRA_a [Mus musculus]
          Length = 1086

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 84/308 (27%), Gaps = 49/308 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y    +       + +G NG GK++I+ AI     G+         V  
Sbjct: 53  IVRIAMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 112

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN   +  ++V+E    L I  
Sbjct: 113 FVKRGCSKGLVEIELFRTSGNLIITREIDVIKNQSFWFINKKPVTQKIVEEQVAALNIQV 172

Query: 125 -----LVPSM----------DRIFS------GLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                 +P              +        G     R   +          R +    E
Sbjct: 173 GNLCQFLPQDKVGEFAKLSKIELLEATEKSVGPPEMHRYHCEL------KNFREKEKQLE 226

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
              + +   L +    +              V+    R   ++ L  ++        + +
Sbjct: 227 TSCKEKTEYLEKMVQRNERYKQ--------DVERFYERKRHLD-LIEMLEAKRPWVEYEN 277

Query: 224 IKLSLTG--FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           ++    G   +  +  +    LKE          ++D           R  L V   +K+
Sbjct: 278 VRQEYEGVKLIRDRVKEEVRKLKEGQIPMTRRIEEIDR---------QRHTLEVRIKEKS 328

Query: 282 ITIAHGST 289
             I   S 
Sbjct: 329 TDIKEASQ 336


>gi|258654731|ref|YP_003203887.1| hypothetical protein Namu_4619 [Nakamurella multipartita DSM
          44233]
 gi|258557956|gb|ACV80898.1| conserved hypothetical protein [Nakamurella multipartita DSM
          44233]
          Length = 582

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIF--VGDNGVGKTNILEAISFLSPGR 54
          ++I+ + I  F+          A  T F  +G     KT +LEAI      R
Sbjct: 1  MRIRRVEIENFKGIKRADWRVPADKTFFCLIGPGDSSKTTLLEAIHLALTDR 52


>gi|262199290|ref|YP_003270499.1| SMC domain protein [Haliangium ochraceum DSM 14365]
 gi|262082637|gb|ACY18606.1| SMC domain protein [Haliangium ochraceum DSM 14365]
          Length = 851

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPG-RGFRRASY 61
          ++   L +   R+YA    + F  +     VGD G GK++ILEAI +   G   + +   
Sbjct: 1  MRPLLLRVKGLRSYASERTIDFSERTLAAIVGDTGAGKSSILEAICYALYGSSSWNQRGV 60

Query: 62 ADVTRIGSP 70
           ++   G+ 
Sbjct: 61 KELISHGAD 69


>gi|191168705|ref|ZP_03030484.1| conserved hypothetical protein [Escherichia coli B7A]
 gi|190901253|gb|EDV61023.1| conserved hypothetical protein [Escherichia coli B7A]
          Length = 536

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
           IKI  L+I     +    +  ++  T   G NG+GKT++L+ I 
Sbjct: 25 NIKICSLSIKNVPLFEDADITINSALTSICGRNGIGKTSLLKLIY 69


>gi|150398128|ref|YP_001328595.1| hypothetical protein Smed_2931 [Sinorhizobium medicae WSM419]
 gi|150029643|gb|ABR61760.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 382

 Score = 44.1 bits (103), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 13/103 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-SPGRGFRRASYAD 63
           + ++ +    +R+  S+R+   A   +F+G+NGVGK+N+   +  + +  RG      A+
Sbjct: 1   MLLRSMFAENYRSLRSIRMDL-AGVNLFIGENGVGKSNLYRGLQLVQAAVRGHFAREIAE 59

Query: 64  -----------VTRIGSPSFFSTFARVEGMEGLADISIKLETR 95
                        R G P+     A +   E       ++E  
Sbjct: 60  EGGMASAIWSGSRRAGKPARIRLDAELMDEERAITFRYRIEAG 102


>gi|330970648|gb|EGH70714.1| SMC-like protein [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 882

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 5   IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISF 49
           +++  + +  FR ++      F   +T   G NG GK+++ EA+ +
Sbjct: 81  VRLTKVEVEHFRGFSDKHTFEFKNPYTFVYGPNGTGKSSLCEALEY 126



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
           R ++  +  DK   +   S G  + + + I LA       T    P L+ D++   +D++
Sbjct: 622 RIEIEFENGDKCDALQVLSEGHIRCLGLAILLA-----KITRDRLPFLIFDDVVNSIDDE 676

Query: 330 KRNALFRIVTDIGS----QIFMTGTDKSVFDSLNET 361
            R+A+  ++ +       Q+ +T   +     L   
Sbjct: 677 HRSAIIDLILNPEEVGKRQLIVTTHGEDFVKRLENA 712


>gi|327310156|ref|YP_004337053.1| hypothetical protein TUZN_0243 [Thermoproteus uzoniensis 768-20]
 gi|326946635|gb|AEA11741.1| hypothetical protein TUZN_0243 [Thermoproteus uzoniensis 768-20]
          Length = 349

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++++ L    FR      +  +  H +  G    GKT++LEA+S L   RG
Sbjct: 1  MELRRLCARNFRALDRC-VDLE-GHALLFGPPNSGKTSLLEALSMLMQSRG 49


>gi|315187267|gb|EFU21023.1| hypothetical protein SpithDRAFT_0020 [Spirochaeta thermophila DSM
           6578]
          Length = 716

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASYAD 63
           ++++ + +  F  ++ +R       T+F G N  GK+ + +A+   ++ GR        D
Sbjct: 1   MRLRGIRLIGFGKFSEVRFELGP-VTVFHGPNEAGKSTVCDALYDLIASGR-------KD 52

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           + R G            G E     S+  E    RS R 
Sbjct: 53  LDRYGRAGERRVEGEWVGEEWHVPASLFSEVFAIRSGRV 91


>gi|330915009|ref|XP_003296873.1| hypothetical protein PTT_07081 [Pyrenophora teres f. teres 0-1]
 gi|311330803|gb|EFQ95045.1| hypothetical protein PTT_07081 [Pyrenophora teres f. teres 0-1]
          Length = 1215

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 7  IKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF 49
          IK + I  F++Y   L++  F     + VG NG GK+N   A+ F
Sbjct: 4  IKQITIQGFKSYKEQLQIEPFSPNCNVVVGRNGSGKSNFFAAVRF 48



 Score = 40.3 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 63/193 (32%), Gaps = 20/193 (10%)

Query: 156  RRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
                    R +  R   L T      +    ++         I     ++ +A   +  +
Sbjct: 982  YENFTRQRRTLTERRAELDTSRKSIENLIDVLDQ---RKDEAIARTFKQVASAFGEVFQQ 1038

Query: 215  YVQKENFPHIKLSLTGFLD---GKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
             V       + ++     D   G  D +    +EE  +      K++  +  ++     S
Sbjct: 1039 LV-PIGRGRLIINRKSDRDARGGGGDDASSDDEEEETQG--KKSKVEEYTGVSIAVSFNS 1095

Query: 272  DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
                   D+   I   S G++ +  + +  A           AP  L DEI A+LD   R
Sbjct: 1096 K-----HDEQQKIGQLSGGQKSLCALALIFA-----IQKCDPAPFYLFDEIDANLDAQYR 1145

Query: 332  NALFRIVTDIGSQ 344
             A+ +++  +  Q
Sbjct: 1146 TAVAQMLEKLSGQ 1158


>gi|15614944|ref|NP_243247.1| hypothetical protein BH2381 [Bacillus halodurans C-125]
 gi|10175001|dbj|BAB06100.1| BH2381 [Bacillus halodurans C-125]
          Length = 470

 Score = 44.1 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          I  + +  F+++    + F     + VG++  GKT+IL AI
Sbjct: 4  INQVRLENFQSHLDTVIEFGEGMNVIVGESDSGKTSILRAI 44


>gi|297584551|ref|YP_003700331.1| DNA repair protein RecN [Bacillus selenitireducens MLS10]
 gi|297143008|gb|ADH99765.1| DNA repair protein RecN [Bacillus selenitireducens MLS10]
          Length = 569

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L I +F     + + F+   T+  G+ G GK+ I++AI  L  GRG      AD  R
Sbjct: 2  LLELTIKDFAIIERVTISFEGGLTVMTGETGAGKSIIIDAIGQLIGGRG-----SADFVR 56

Query: 67 IGSPSFFSTFARVEGMEGLAD 87
                 S  A +EG+  + D
Sbjct: 57 H-----ASKRAEIEGIFSIED 72


>gi|294676386|ref|YP_003577001.1| DNA repair protein RecN [Rhodobacter capsulatus SB 1003]
 gi|294475206|gb|ADE84594.1| DNA repair protein RecN [Rhodobacter capsulatus SB 1003]
          Length = 549

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 17/117 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L+L F A   +  G+ G GK+ +L+ + F+   RG      A++ R
Sbjct: 2   LCTLDIRDMLLIDRLQLDFGAGLNVLTGETGAGKSILLDCLGFVLGWRG-----RAELVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVRC-LQINDVVIR 111
            G+                  A +E     A+  + L   + R  R    IND    
Sbjct: 57  AGAAQGEVVAVFELPAGHPARAVLEDAGIPAEDELILRRVNARDGRKTAFINDRRAS 113


>gi|229060128|ref|ZP_04197498.1| Purine NTPase [Bacillus cereus AH603]
 gi|228719168|gb|EEL70778.1| Purine NTPase [Bacillus cereus AH603]
          Length = 787

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 12 ISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  F++     + F+     +  G NG GKT I +AI  +  G
Sbjct: 3  LENFKSIDEAIVTFNGENLNVLDGPNGFGKTTIYDAIELVLTG 45


>gi|74095933|ref|NP_001027801.1| structural maintenance of chromosomes protein 5 [Takifugu rubripes]
 gi|82132695|sp|Q802R9|SMC5_TAKRU RecName: Full=Structural maintenance of chromosomes protein 5;
           Short=SMC protein 5; Short=SMC-5
 gi|28301615|emb|CAD65850.1| SMC5 protein [Takifugu rubripes]
          Length = 1092

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 8/111 (7%)

Query: 3   NRI--KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---R 57
            R+   I  + +  F  Y    +       + VG NG GK++I+ AI     G+     R
Sbjct: 38  GRMDGSILRITMRNFLTYDYTEVYPGPNLNMIVGANGTGKSSIVCAICLGLAGKTAVLGR 97

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                   + G          +E  +   ++ I  E   + +     IN  
Sbjct: 98  GDKVGLYVKRGCQKG---SIEIELYKHGGNLVITREIHVENNQSHWMINGK 145


>gi|268572561|ref|XP_002641353.1| C. briggsae CBR-SMC-3 protein [Caenorhabditis briggsae]
          Length = 1204

 Score = 43.7 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 5  IKIKFLNISE---FRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF 49
          +KIK + +     FR+Y     V  F  +  + VG NG GK+N   AI F
Sbjct: 1  MKIKEVRLVRINGFRSYKDNTHVSGFSPRSNVVVGRNGSGKSNFFHAIQF 50



 Score = 42.6 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 66/196 (33%), Gaps = 24/196 (12%)

Query: 157  RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-Y 215
            + +  +      +  L           +SIE  +  L  +   A       +S    E +
Sbjct: 988  KALDQYMTASTQKEELTKRMDEQKRSEASIEELLEVLENRKFEAIDMTFKQVSKNFKEVF 1047

Query: 216  VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
             Q       K++L    +   D S                +++S    T++    SD   
Sbjct: 1048 KQLVPHGSGKMTLKAGDEQDSDPS--------------RHRVESYQGITVMVSFVSD--- 1090

Query: 276  DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
            D   +   +   S G++ +V + I  A           AP  L DEI A LD   R ++ 
Sbjct: 1091 DGTSETREMTQLSGGQKSLVALAIIFA-----IQKCDPAPFYLFDEIDAALDAQHRKSVA 1145

Query: 336  RIVTDIGSQI-FMTGT 350
             ++  +  Q  F+T T
Sbjct: 1146 EMIRSLSDQAQFVTTT 1161


>gi|296224444|ref|XP_002807609.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of
           chromosomes protein 6-like [Callithrix jacchus]
          Length = 1097

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 18/100 (18%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     GR     R +S  
Sbjct: 54  IESIRLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNRGSSLK 113

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
              + G  S              ADISI L  R D + + 
Sbjct: 114 GFVKDGQNS--------------ADISITLRNRGDDAFKA 139


>gi|266620372|ref|ZP_06113307.1| DNA repair protein RecN [Clostridium hathewayi DSM 13479]
 gi|288868029|gb|EFD00328.1| DNA repair protein RecN [Clostridium hathewayi DSM 13479]
          Length = 554

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M + + +K L +          + F     I  G+ G GK+ I+ +++    G+      
Sbjct: 1  MLSELHVKNLAL-----IEKADIEFGEGLNILTGETGAGKSIIIGSVTMALGGK-----V 50

Query: 61 YADVTRIGSPSFFS 74
            D+ R G+   + 
Sbjct: 51 QKDMIRRGTEYAYV 64


>gi|257470527|ref|ZP_05634617.1| SMC domain protein [Fusobacterium ulcerans ATCC 49185]
 gi|317064734|ref|ZP_07929219.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC
          49185]
 gi|313690410|gb|EFS27245.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC
          49185]
          Length = 366

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++  ++IS +++     +  + +  + +G NG GK+N + A + L
Sbjct: 7  QLSRIDISGYKSIKKCSIKLN-KINVLIGSNGAGKSNFISAFALL 50


>gi|94265950|ref|ZP_01289675.1| ATPase-like [delta proteobacterium MLMS-1]
 gi|93453493|gb|EAT03904.1| ATPase-like [delta proteobacterium MLMS-1]
          Length = 374

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 121/362 (33%), Gaps = 74/362 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYADV 64
           +K +    FR + +          + +G NG GKT ++E +  L        R      +
Sbjct: 2   LKRIYAHNFRTFVNFETSLRP-VQLLMGPNGSGKTALMEILERLRQLICESARIHDTFPL 60

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQI----NDVVIRVVDELN 117
                       A + G EG  D+  +L+ +DD+       LQI       + RV  E  
Sbjct: 61  --------SERSAGLAGAEG--DMRFELDMQDDKGGLYTYGLQIEVDDGRGLQRVGREWL 110

Query: 118 KHLRISWLVPS--MDRIFSGLSMERRRF-LDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
            +             +++     E   F +D  +  +             LM+ R     
Sbjct: 111 HYNGKPLFAAERGEAQLYRDDHSEGPSFPMDWSLSGV-----------GFLMKSR----- 154

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
               D++  S+ + Q+A         R+  I+ L S + +  + E        L  F D 
Sbjct: 155 ----DNNLLSAFKDQLA---------RLYFIHMLPSTMSDESRAE-ASRPDCRLANFADW 200

Query: 235 KFDQSFC------ALKEEYAKKL---FDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITI 284
               S         L E+ +++L      R  ++   + L+     D   +   K ++  
Sbjct: 201 YRHLSLAMPERVHTLAEDLSQRLPGFIGLRFREAGDGKILLV----DFEAETGGKSSMRF 256

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GS 343
              S G++   L+G+  A  R +        +L +DE    L   +       + DI   
Sbjct: 257 GTLSDGQK--ALIGL-YAVLRALPEAG---AVLCIDEPENFLALPEIQPWLDELNDIAEE 310

Query: 344 QI 345
           Q+
Sbjct: 311 QV 312


>gi|74096357|ref|NP_001027868.1| structural maintenance of chromosomes protein 6 [Takifugu rubripes]
 gi|82132692|sp|Q802R8|SMC6_TAKRU RecName: Full=Structural maintenance of chromosomes protein 6;
           Short=SMC protein 6; Short=SMC-6
 gi|28301617|emb|CAD65851.1| SMC6 protein [Takifugu rubripes]
          Length = 1090

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           +K + ++ F  +A+L    F +     VG NG GK+ IL  +     G      R +S  
Sbjct: 55  VKSITLNNFMCHANLGPFAFGSNVNFIVGKNGSGKSAILTGLIVALGGNAQATNRGSSLK 114

Query: 63  DVTRIGSPSFFSTF 76
              + G      + 
Sbjct: 115 GFVKEGESFAVVSI 128


>gi|301758366|ref|XP_002915034.1| PREDICTED: structural maintenance of chromosomes protein 6-like
           [Ailuropoda melanoleuca]
          Length = 1098

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 18/100 (18%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 54  IESIQLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLK 113

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
              + G  S              ADISI L  R D + R 
Sbjct: 114 GFVKDGQNS--------------ADISITLRNRGDDAYRA 139


>gi|154273336|ref|XP_001537520.1| hypothetical protein HCAG_07829 [Ajellomyces capsulatus NAm1]
 gi|150416032|gb|EDN11376.1| hypothetical protein HCAG_07829 [Ajellomyces capsulatus NAm1]
          Length = 1179

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 17/125 (13%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA+  +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIVEVIIDGFKSYAARTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L    
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSKSPIGFEEYASISVTRQIVLGGTSKYLINGH 120

Query: 108 VVIRV 112
              + 
Sbjct: 121 RAQQQ 125


>gi|113911989|gb|AAI22735.1| SMC5 protein [Bos taurus]
          Length = 603

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 32/102 (31%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y    +       + +G NG GK++I+ AI     G+         V  
Sbjct: 55  IVRIAMENFLTYDVCEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 114

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                       +E      ++ I  E    ++     IN  
Sbjct: 115 FVKRGCSKGMVEIELFRTSGNLVITREIDVAKNQSSWFINKK 156


>gi|73748390|ref|YP_307629.1| putative exonuclease SbcC [Dehalococcoides sp. CBDB1]
 gi|73660106|emb|CAI82713.1| putative exonuclease SbcC [Dehalococcoides sp. CBDB1]
          Length = 859

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 74/250 (29%), Gaps = 32/250 (12%)

Query: 9   FLNISEFRNYASLRLVFDAQ---HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            L I  F  Y      F           G NG GK+ +++AI++   G+  R  S  DV 
Sbjct: 5   KLKIKNFMCYRGEIPPFSFNGIHTACICGQNGAGKSALIDAITWALWGKS-RAKSDDDVI 63

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            +       +      ++      +    R  +  +    N                   
Sbjct: 64  SLNEQEAEVS------LDFEISGELYQVIRQRQRPKKAGANGQ----------------- 100

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM-IDFERLMRGRNRLLTEGYFDSSWCS 184
             S+  +FS    + R      +   + +    + +D++  +   +  L +G+ +     
Sbjct: 101 --SLLSLFSLQDEKPRNITGDTLTQTEKKIISILHMDYDTFI--NSAFLRQGHANQFTQQ 156

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
               +   L   + +   + +  L+   +   + +N    +    G    K         
Sbjct: 157 PPGKRKEVLANILGLEIYDQLEDLARQAVREAEAKNLQIEQSIEDGKESLKSRPELEEAL 216

Query: 245 EEYAKKLFDG 254
               K L +G
Sbjct: 217 NHTRKDLAEG 226


>gi|253990978|ref|YP_003042334.1| nuclease sbccd subunit c [Photorhabdus asymbiotica subsp.
          asymbiotica ATCC 43949]
 gi|253782428|emb|CAQ85592.1| nuclease sbccd subunit c [Photorhabdus asymbiotica]
          Length = 1229

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 12/94 (12%)

Query: 5  IKIKFLNISEFRNYA-SLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          +KI  L +    +     ++ F              G  G GKT +L+AI      +  R
Sbjct: 1  MKILSLRLKNINSLQGEWKIDFTTEPFASNGLFAITGPTGAGKTTLLDAICLALYHKTPR 60

Query: 58 -----RASYADVTRIGSPSFFSTFARVEGMEGLA 86
                +    +TR  + S       V+G+   A
Sbjct: 61 LMTISTSQNELMTRHTAESLAEVEFEVKGVAYRA 94


>gi|123473236|ref|XP_001319807.1| SMC family, C-terminal domain containing protein [Trichomonas
          vaginalis G3]
 gi|121902599|gb|EAY07584.1| SMC family, C-terminal domain containing protein [Trichomonas
          vaginalis G3]
          Length = 1095

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I+ F++Y                +G NG GK+N+ +AI F
Sbjct: 1  MFIKRVTITGFKSYGKTTTFDDLSKGLNTIIGFNGSGKSNLYKAIEF 47



 Score = 37.2 bits (85), Expect = 4.4,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 60/151 (39%), Gaps = 8/151 (5%)

Query: 209  SSLIMEYVQKENFPHIKL-SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIG 267
             + +ME  +K N    K+  +   LD   D++     E  +K   +   + +     L  
Sbjct: 919  QTKLMEEREKLNENEEKINEMISRLDKDRDKTLNETFESVSKHFNEYLSIITNLDVKLNL 978

Query: 268  PHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
             + S  +    +    ++  S G++ +V + +  +    +    G AP  + DE  + LD
Sbjct: 979  NNESKEVSLLIENVENVSQLSGGQKSIVAICLVFS----MQEIFG-APFYIFDEFDSALD 1033

Query: 328  EDKRNALFRIVTDI--GSQIFMTGTDKSVFD 356
             + R  L +++  +   SQ  +T     + D
Sbjct: 1034 IEHRANLCKLIKKLSESSQYIVTTFKSDILD 1064


>gi|37521412|ref|NP_924789.1| hypothetical protein gll1843 [Gloeobacter violaceus PCC 7421]
 gi|35212409|dbj|BAC89784.1| gll1843 [Gloeobacter violaceus PCC 7421]
          Length = 368

 Score = 43.7 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 7   IKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-V 64
           ++ + +  F++ AS+  L       + +G NG GK+N ++     +     R     D V
Sbjct: 4   LETITVKGFKSIASIEQLKLKP-INVIIGPNGSGKSNFID---VFTFLHALREGRLQDYV 59

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
            + G       +    G +    I I +  R  R+   +++
Sbjct: 60  IKAGGAEKILHY----GSKVTDKIQIDISFRGGRNRYEIEL 96


>gi|227113542|ref|ZP_03827198.1| recombination and repair protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 553

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 86/259 (33%), Gaps = 42/259 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  ++  G+ G GK+  ++A+      R       A + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMSVITGETGAGKSIAIDALGLCLGNRS-----DASMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+      + FA  +       +  + +  D       ++     R    +N       
Sbjct: 57  PGAARADICARFALADTPTARQWLE-ENQLDDSNECLLRRVISADGRSRGFING------ 109

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM---IDFERLMRGRNRLLTEGYFDSS 181
                    + + + + R L + +  +  +H  ++    D ++ +        E     +
Sbjct: 110 ---------TAVPLSQLRELGQHLIQVHGQHAHQLLLRSDHQKHLLD--AYADEPKLLVA 158

Query: 182 WCSSIEAQ------MAEL--GVKINIARVEMINALSSLIMEY------VQKENFPHIKLS 227
                         +A+L        AR E++      + E+       ++ +  + +L+
Sbjct: 159 MQQVWHQWHQSCRALAQLQQAAIEREARRELLQYQLKELNEFSPQPGEYEQIDVEYKRLA 218

Query: 228 LTGFLDGKFDQSFCALKEE 246
            +G L     Q+   L E+
Sbjct: 219 NSGQLLTMSQQAMQLLSED 237


>gi|254483122|ref|ZP_05096356.1| DNA repair protein RecN [marine gamma proteobacterium HTCC2148]
 gi|214036644|gb|EEB77317.1| DNA repair protein RecN [marine gamma proteobacterium HTCC2148]
          Length = 549

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 78/259 (30%), Gaps = 28/259 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  ++I+ +   +SL + F    T+  G+ G GK+ +L+A+      R     +     R
Sbjct: 2   LSHISITNYTIVSSLEMEFARGMTVITGETGAGKSIMLDALGLCLGDR-----ADPKTVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRVVD 114
            G      T            A ++G +        L        R    IN     + D
Sbjct: 57  HGCDRADITATFDISDIPAAGAWLQGRDLSGGDECILRRVVTTEGRSRAYINGSTSTLQD 116

Query: 115 --ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
             EL   L       +   +       +R  LD             +     +  +R + 
Sbjct: 117 CAELGSILIDIHSQHAHQSLLRKS--VQREMLDVYAGQQKLASSVEQLASDWLRAQRELE 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                  E    +   +    ++ EL ++     +  +     L+    +  +  H  L 
Sbjct: 175 LLTGSQDEHTARAQLLAYQVEELNELALQEGE--LAAMEQEQKLLANAEEILSSAHSALE 232

Query: 228 LTGFLDGKFDQSFCALKEE 246
           L    +    Q+   L EE
Sbjct: 233 LCEQQEIGTRQALNFLDEE 251


>gi|148709653|gb|EDL41599.1| mCG5312, isoform CRA_b [Mus musculus]
          Length = 1106

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 84/308 (27%), Gaps = 49/308 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y    +       + +G NG GK++I+ AI     G+         V  
Sbjct: 72  IVRIAMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 131

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN   +  ++V+E    L I  
Sbjct: 132 FVKRGCSKGLVEIELFRTSGNLIITREIDVIKNQSFWFINKKPVTQKIVEEQVAALNIQV 191

Query: 125 -----LVPSM----------DRIFS------GLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
                 +P              +        G     R   +          R +    E
Sbjct: 192 GNLCQFLPQDKVGEFAKLSKIELLEATEKSVGPPEMHRYHCEL------KNFREKEKQLE 245

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
              + +   L +    +              V+    R   ++ L  ++        + +
Sbjct: 246 TSCKEKTEYLEKMVQRNERYKQ--------DVERFYERKRHLD-LIEMLEAKRPWVEYEN 296

Query: 224 IKLSLTG--FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
           ++    G   +  +  +    LKE          ++D           R  L V   +K+
Sbjct: 297 VRQEYEGVKLIRDRVKEEVRKLKEGQIPMTRRIEEIDR---------QRHTLEVRIKEKS 347

Query: 282 ITIAHGST 289
             I   S 
Sbjct: 348 TDIKEASQ 355


>gi|123496174|ref|XP_001326909.1| ABC transporter family protein [Trichomonas vaginalis G3]
 gi|121909830|gb|EAY14686.1| ABC transporter family protein [Trichomonas vaginalis G3]
          Length = 831

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 54/127 (42%), Gaps = 13/127 (10%)

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E+ +     R +D  + +  I     +L +            S G+++ + + + L    
Sbjct: 619 EHLEIFGRIRGIDEQTLQESIDFFADNLQLK-EMLPNRAGDLSGGQKRKLCIAMAL---- 673

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-GSQIFMTGTDKSVFDSLNETAKF 364
                 G  PI+++DE +A +D   R  +++ ++++  S   +T    ++ ++   +++ 
Sbjct: 674 -----LGNPPIIMMDEPTAGVDVQARQLIWKAISNLKNSTCIITT--HALEEAEAVSSRM 726

Query: 365 MRISNHQ 371
             +S  Q
Sbjct: 727 FVVSRGQ 733


>gi|313888331|ref|ZP_07822002.1| RecF/RecN/SMC N-terminal domain protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
 gi|312845734|gb|EFR33124.1| RecF/RecN/SMC N-terminal domain protein [Peptoniphilus harei
          ACS-146-V-Sch2b]
          Length = 244

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 10/53 (18%)

Query: 7  IKFLNISEF------RNYASLR----LVFDAQHTIFVGDNGVGKTNILEAISF 49
          I  +NI +F      RN  SL+    +      T FVG+NG GK+ +LEAI+ 
Sbjct: 7  IYKINIEDFEEYSYLRNIPSLKNFQGIKIHKPVTFFVGENGSGKSTLLEAIAV 59


>gi|307106676|gb|EFN54921.1| hypothetical protein CHLNCDRAFT_134635 [Chlorella variabilis]
          Length = 1220

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFR 57
             R+ I  + +  F++YA  +    F    +  VG NG GK+N+++A+ F+     +  R
Sbjct: 14  AARLMITQMVLENFKSYAGAQSVGPFHKSFSSVVGPNGSGKSNVIDAMLFVFGKRAKQLR 73

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               +++    +       ARV       
Sbjct: 74  LNKVSELIHNSTYHRNLEQARVSVHFQEI 102


>gi|296082911|emb|CBI22212.3| unnamed protein product [Vitis vinifera]
          Length = 1253

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 2  TNRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFR 57
            R+ IK + +  F++Y        F    +  VG NG GK+N+++A+ F+     +  R
Sbjct: 25 APRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMR 84

Query: 58 RASYADVTR 66
              +++  
Sbjct: 85 LNKVSELIH 93


>gi|189466079|ref|ZP_03014864.1| hypothetical protein BACINT_02449 [Bacteroides intestinalis DSM
          17393]
 gi|189434343|gb|EDV03328.1| hypothetical protein BACINT_02449 [Bacteroides intestinalis DSM
          17393]
          Length = 1140

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT------IFVGDNGVGKTNILEAISF 49
          +K++ L I    +     + F+          +  G+ G GKT +L+AI  
Sbjct: 1  MKLQKLTIKNLASIEDAVIDFENGPLSEESLFLICGETGAGKTTLLDAICL 51


>gi|169629447|ref|YP_001703096.1| DNA repair protein RecN [Mycobacterium abscessus ATCC 19977]
 gi|169241414|emb|CAM62442.1| DNA repair protein RecN [Mycobacterium abscessus]
          Length = 586

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 47/245 (19%), Positives = 87/245 (35%), Gaps = 24/245 (9%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I+I+ L         +    FD+  T+  G+ G GKT ++ ++  L   R     +
Sbjct: 1   MLTEIRIESLGA-----IPAATAEFDSGLTVLTGETGAGKTMVVTSLHLLGGAR-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
            A+  R G+       A VEG    AD  +  E  +   V    ++    +  D+ +   
Sbjct: 51  DANRVRAGADR-----AVVEGRFLTAD-PLGAEPAEVTEV----LDSSGAQRDDDGSVIA 100

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
             S       R + G      + L      +   H +   D  RLMR   +L     F S
Sbjct: 101 ARSVTSDGRSRAYLGGRSVPAKSLASFTAGLLTVHGQN--DQLRLMRPEQQLAALDKFAS 158

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALS--SLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
               ++     +L  +   AR ++I+  +    + +   +  F   ++       G+ DQ
Sbjct: 159 DSIEALLTTYRKLREEWLAARRDLIDRTNRVRELAQEADRLGFALNEIDTVDPKPGEDDQ 218

Query: 239 SFCAL 243
               +
Sbjct: 219 LTADI 223


>gi|88603012|ref|YP_503190.1| ATPase [Methanospirillum hungatei JF-1]
 gi|88188474|gb|ABD41471.1| ATPase [Methanospirillum hungatei JF-1]
          Length = 515

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGF 56
          +++ + I   R    + + F    ++  G N  GKT +L A+  L     GR F
Sbjct: 23 RLEQVRIQNIRGIVDISIRFPYPVSVLAGPNACGKTTVLHALGCLYINKLGRSF 76


>gi|25028104|ref|NP_738158.1| putative DNA repair protein RecN [Corynebacterium efficiens YS-314]
 gi|23493388|dbj|BAC18358.1| putative DNA repair protein RecN [Corynebacterium efficiens YS-314]
          Length = 596

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 83/282 (29%), Gaps = 42/282 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----F 56
           M   I I+ L +       +    F +  T+  G+ G GKT ++  +  LS GR      
Sbjct: 4   MLADITIENLGV-----IPAASAEFSSGLTVLTGETGAGKTMVVTGLRLLSGGRADASRV 58

Query: 57  RRASYADVT--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND------- 107
           R  +   V   R  + +                     E  +  +VR +  N        
Sbjct: 59  RTGARQAVVEGRFVTENAPCDIVERATGIVSNAGGCADENGEFLAVRSVSANGRSKAHLG 118

Query: 108 ---VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM---VFAIDPRH---RRR 158
              V    + E +  L          R+       +   LDR    +  +   +      
Sbjct: 119 GRSVPAATLSEFSGELLTIHGQNDQLRLL--SPERQLDALDRFLPTLSGLRKAYVEKYTT 176

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCS----SIEA------QMAELGVKINIARVEMINAL 208
             +  R ++ R     E   +          I+A      +  EL  +I   R++ ++ L
Sbjct: 177 WKELSRDLKQRVSSRRELAQEVDRLQFAINEIDAVEPTPGEDVELLAQI--RRLQDVDTL 234

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
                  +   +         G   G FD+   +  ++  + 
Sbjct: 235 REQAATALAAIDGAGALNESMGGAAG-FDEEQHSASDQLGQA 275


>gi|309389771|gb|ADO77651.1| ABC transporter related protein [Halanaerobium praevalens DSM 2228]
          Length = 207

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G++K++     LA             ILLLDE  A LD+     + +I+  I     +
Sbjct: 138 SQGQKKIIAFAAVLAM---------EPDILLLDEPFASLDKQSVKRMIKILNKIPQSFII 188

Query: 348 TGTDKSVFDSLNETAKFMR 366
              +K + D +   + F+ 
Sbjct: 189 VSHNKVLLDQVTNISYFIE 207


>gi|260549560|ref|ZP_05823778.1| SMC domain-containing protein [Acinetobacter sp. RUH2624]
 gi|260407353|gb|EEX00828.1| SMC domain-containing protein [Acinetobacter sp. RUH2624]
          Length = 242

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +L F    T FVG+NG GK+ I+EAI+ L+ G  
Sbjct: 36 QLTFHPDVTFFVGENGSGKSTIMEAIA-LALGFS 68


>gi|260588131|ref|ZP_05854044.1| DNA repair protein RecN [Blautia hansenii DSM 20583]
 gi|331082301|ref|ZP_08331427.1| DNA repair protein RecN [Lachnospiraceae bacterium 6_1_63FAA]
 gi|260541658|gb|EEX22227.1| DNA repair protein RecN [Blautia hansenii DSM 20583]
 gi|330400787|gb|EGG80388.1| DNA repair protein RecN [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 560

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 25/131 (19%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L +          + F+    I  G+ G GK+ ++ +++     +  R   
Sbjct: 1   MLVHLHVKNLAL-----IEEAEVDFEEGLNILTGETGAGKSILIGSVNLALGQKMSR--- 52

Query: 61  YADVTRIGSPSFFSTFARVEGMEGL----------ADISIKLETRDDRSVRCLQINDVV- 109
             ++ R G+   +         +             +  + +  R   +    +IN    
Sbjct: 53  --EMIREGADYAYVELVFQVNPDTEEKLKKLEVFPEEGQVIISRRFTENRSISKINGETT 110

Query: 110 ----IRVVDEL 116
               IR + EL
Sbjct: 111 TVSGIRKISEL 121


>gi|167563990|ref|ZP_02356906.1| DNA repair protein RecN [Burkholderia oklahomensis EO147]
          Length = 549

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F   A+L L FD+  ++F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2  LRHLSIRDFVIVAALDLEFDSGFSVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67 IGSPSF 72
           G    
Sbjct: 57 AGCARA 62


>gi|162453954|ref|YP_001616321.1| hypothetical protein sce5678 [Sorangium cellulosum 'So ce 56']
 gi|161164536|emb|CAN95841.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 900

 Score = 43.7 bits (102), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 6   KIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
           ++  +N+S FR +       +  DA   +  G NG GK+++L+A+     G G
Sbjct: 230 RVHKVNLSNFRGWCGTNEHEIDVDADLVLLTGANGQGKSSLLQAVMLALTGDG 282


>gi|319902382|ref|YP_004162110.1| hypothetical protein Bache_2566 [Bacteroides helcogenes P 36-108]
 gi|319417413|gb|ADV44524.1| hypothetical protein Bache_2566 [Bacteroides helcogenes P 36-108]
          Length = 1139

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT------IFVGDNGVGKTNILEAISF 49
          ++++ L I    +     + F+          +  G+ G GKT +L+AI  
Sbjct: 1  MRLQKLTIKNLASIEDAVIDFENGPLKEESLFLICGETGAGKTTLLDAICL 51


>gi|307353930|ref|YP_003894981.1| hypothetical protein Mpet_1790 [Methanoplanus petrolearius DSM
          11571]
 gi|307157163|gb|ADN36543.1| conserved hypothetical protein [Methanoplanus petrolearius DSM
          11571]
          Length = 603

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 24/46 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  + +  FR Y   + +     T  +G N +GK+++LEA+   
Sbjct: 1  MKLISVTLKNFRCYLDEKTIQIQDLTTIIGKNDIGKSSVLEALEIF 46


>gi|227546209|ref|ZP_03976258.1| ATPase involved in DNA repair [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227213190|gb|EEI81062.1| ATPase involved in DNA repair [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 608

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 73/260 (28%), Gaps = 53/260 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYADV 64
           ++ L+I          +   A  T   G+ G GK+ +L AI  +S G     R ++ AD 
Sbjct: 2   LEELDIRNLGPIREATIAPAAGMTAITGETGAGKSMLLSAIRLVSGGAAESSRVSAGADE 61

Query: 65  TRIGSPSFFSTFARVEGMEGLA------------------------------DISIKLET 94
               +    S  A      G                                D  + L  
Sbjct: 62  AWAQAIFALSDDAVASEHSGDTNDAGSGDADSGFTGAAAAVAKAHDAGVDPEDGELFLSR 121

Query: 95  RDDRSVRCLQINDVVIRVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP 153
               S R   +          L      +  +    D++    S  +R FLDR+      
Sbjct: 122 TVRASGRSRAVLGGKSVPRSVLGGIAGELVTIHGQTDQLKIAASSRQREFLDRVAGD--- 178

Query: 154 RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
                +  + +                   ++++ ++  L  + + AR +  + L   I 
Sbjct: 179 --EAELAAYRKAW--------------DALAAMDERLERLRSQESSARQQA-DYLRESID 221

Query: 214 EYVQKENFPHIKLSLTGFLD 233
              + +  P     L    +
Sbjct: 222 RINRIDPQPGEDEELKARRE 241


>gi|167571134|ref|ZP_02364008.1| DNA repair protein RecN [Burkholderia oklahomensis C6786]
          Length = 549

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F   A+L L FD+  ++F G+ G GK+ +++A++ L+ G      + A V R
Sbjct: 2  LRHLSIRDFVIVAALDLEFDSGFSVFSGETGAGKSILIDALA-LALGE----RADASVVR 56

Query: 67 IGSPSF 72
           G    
Sbjct: 57 AGCARA 62


>gi|52548677|gb|AAU82526.1| hypothetical protein GZ18C8_3 [uncultured archaeon GZfos18C8]
          Length = 660

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 6/50 (12%)

Query: 5  IKIKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAIS 48
          + IK ++I+++R+  +++L         ++  +  G NG GK++ILE IS
Sbjct: 1  MYIKRIDINKYRHLENVKLGPFSSPSVSSEMVVLAGPNGGGKSSILELIS 50


>gi|83590350|ref|YP_430359.1| DNA repair protein RecN [Moorella thermoacetica ATCC 39073]
 gi|83573264|gb|ABC19816.1| DNA replication and repair protein RecN [Moorella thermoacetica
          ATCC 39073]
          Length = 558

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I       SL+L  +   T+  G+ G GK+ I++A+  L   R     +  +  R
Sbjct: 2  LQELQIENLALIESLQLNLEPGLTVLTGETGAGKSIIVDAVGLLVGAR-----ASGEYIR 56

Query: 67 IGSPSFFS 74
           G+     
Sbjct: 57 AGADKAVV 64


>gi|53711927|ref|YP_097919.1| hypothetical protein BF0636 [Bacteroides fragilis YCH46]
 gi|52214792|dbj|BAD47385.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 709

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 6/49 (12%)

Query: 7   IKFLNISEFRNYASLRLVF-DAQHT-----IFVGDNGVGKTNILEAISF 49
           I++++I  F++  +L++ F + +       I +G+NGVGK++IL+AI+ 
Sbjct: 290 IEYIHIKNFKSIENLKIEFKEDELNNKSWLILLGENGVGKSSILQAIAV 338


>gi|134300660|ref|YP_001114156.1| SMC domain-containing protein [Desulfotomaculum reducens MI-1]
 gi|134053360|gb|ABO51331.1| SMC domain protein [Desulfotomaculum reducens MI-1]
          Length = 250

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISF 49
           L F  + T  VG+NG GK+ +LEAI+ 
Sbjct: 38 TLDFHPRVTFIVGENGTGKSTLLEAIAI 65


>gi|315425116|dbj|BAJ46788.1| chromosome assembly protein homolog [Candidatus Caldiarchaeum
           subterraneum]
          Length = 548

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 8/110 (7%)

Query: 32  FVGDNGVGKTNILEAISF-LSPGRGFRRASYADVTRIGSPSFFSTFAR----VEGMEGLA 86
            VG NG GK++IL AIS  L      R    AD+ R G  S           V+G+  + 
Sbjct: 2   IVGPNGAGKSSILLAISVALGQTYTERGQRLADLIRRGYESARVAVVFDNRPVDGVRPIP 61

Query: 87  DI---SIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133
            I   ++ +     ++       +   +   E+   L    + P    I 
Sbjct: 62  SINSDTVTITRFLKKTGEYWHYVNNRFKTKAEVGNLLSRIGINPDNVLII 111


>gi|224283237|ref|ZP_03646559.1| DNA repair protein RecN [Bifidobacterium bifidum NCIMB 41171]
 gi|310287596|ref|YP_003938854.1| DNA repair protein [Bifidobacterium bifidum S17]
 gi|311064512|ref|YP_003971237.1| DNA repair protein RecN [Bifidobacterium bifidum PRL2010]
 gi|313140384|ref|ZP_07802577.1| DNA repair protein RecN [Bifidobacterium bifidum NCIMB 41171]
 gi|309251532|gb|ADO53280.1| DNA repair protein [Bifidobacterium bifidum S17]
 gi|310866831|gb|ADP36200.1| RecN DNA repair protein [Bifidobacterium bifidum PRL2010]
 gi|313132894|gb|EFR50511.1| DNA repair protein RecN [Bifidobacterium bifidum NCIMB 41171]
          Length = 588

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 72/238 (30%), Gaps = 40/238 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYADV 64
           ++ L I +        L      T   G+ G GK+ +L AI  +S G     R +  A  
Sbjct: 2   LEELEIHDLGPIHRALLTPAGGMTAITGETGAGKSMLLSAIRLISGGPASSGRVSPGA-- 59

Query: 65  TRIGSPSFFSTFARVEGMEGLA-----------DISIKLETRDDRSVRCLQINDVVIRVV 113
               S ++      V+   G+A           D  + L      S R   + +      
Sbjct: 60  ----SEAWAQGVFAVDDRGGVAQEARDAGAVLEDGELYLSRTVPVSGRSRAVLNGKSAPR 115

Query: 114 DELNKH-LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
             L     ++  +    D++    +  +R FLD +    D      +  +          
Sbjct: 116 SVLESLASQLVTIHGQADQLRIAAASRQREFLDMVAGDDD-----LLARYRHSW------ 164

Query: 173 LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
                        ++ ++  L  + + AR    + L   I    + +  P     L G
Sbjct: 165 --------DALRDLDDRLERLRHQESSARQRA-DYLRESIQRINRADPQPGEDEELKG 213


>gi|157311335|ref|YP_001469378.1| endonuclease subunit [Enterobacteria phage Phi1]
 gi|149380539|gb|ABR24544.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          Phi1]
          Length = 560

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 19 ASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR--IGSPSFFST 75
            + +  D  + T+  G NG GK+ ++EA+ F+  G+ FR      +             
Sbjct: 20 EPVEIQLDGFKKTLITGVNGAGKSTMIEALCFVLFGKPFRSIKKGQLINSVHKKKLLVEV 79

Query: 76 FARVEGME 83
          +  ++G E
Sbjct: 80 WFELDGKE 87


>gi|150025560|ref|YP_001296386.1| ABC transporter ATPase [Flavobacterium psychrophilum JIP02/86]
 gi|149772101|emb|CAL43577.1| Probable ABC-type transport system, ATPase component
           [Flavobacterium psychrophilum JIP02/86]
          Length = 314

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 15/96 (15%)

Query: 282 ITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK----RNALFRI 337
           + +   S G+Q+ V +   LA             ILLLDE  +H+D  +    R  LF  
Sbjct: 129 VKVNLLSGGQQQRVALARVLAL---------EPEILLLDEPFSHIDNFRKNALRRNLFSY 179

Query: 338 VTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           +   G   F+   D +  D+L+ + + + + + + +
Sbjct: 180 LKSRGITCFIATHDST--DALSFSDQTIVLKDGKII 213


>gi|123473921|ref|XP_001320146.1| ABC transporter family protein [Trichomonas vaginalis G3]
 gi|121902945|gb|EAY07923.1| ABC transporter family protein [Trichomonas vaginalis G3]
          Length = 832

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 53/128 (41%), Gaps = 13/128 (10%)

Query: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
           E+ +     R +D  + +  I     +L +            S G+++ + + + L    
Sbjct: 620 EHLEIFGRIRGIDEYTLQNSIDFFADNLQLR-EMLPNRAGDLSGGQKRKLCIALSL---- 674

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG-SQIFMTGTDKSVFDSLNETAKF 364
                 G  PI+++DE +A +D   R  +++ ++ +  S   +T    ++ ++   +++ 
Sbjct: 675 -----LGNPPIIMMDEPTAGVDVQARQLIWKTISTLKESTCIITT--HALEEAEAVSSRM 727

Query: 365 MRISNHQA 372
             IS  + 
Sbjct: 728 FVISGGKV 735


>gi|113868041|ref|YP_726530.1| chromosome segregation ATPase [Ralstonia eutropha H16]
 gi|113526817|emb|CAJ93162.1| chromosome segregation ATPase [Ralstonia eutropha H16]
          Length = 1171

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++          Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1   MRLSSIKLAGFKSFVDPTNFQVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRASELRGES 60

Query: 61  YADVT--------RIGSPSFFSTFARVEGM-----EGLADISIKLETRDDRSVRCLQIND 107
             DV         + G  S    F   EG         A++++K     D +     IN+
Sbjct: 61  MQDVIFNGSTARKQAGRASVELVFDNAEGRAAGQWSQYAEVAVKRVLTRDGTS-SYYINN 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 QPVRRRD 126



 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 188  AQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKE 245
            A + EL       R   ++A S+ + + +   ++    I       L G FDQ      E
Sbjct: 973  AALDELAAA--RERKTFLDAQSADLNDAINTLEDAIAKIDQETRALLQGTFDQVNHHFGE 1030

Query: 246  EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             +      G+    M+   ++      +      K  TI   S GE+ +  + +  A  +
Sbjct: 1031 LFPSLFGGGQARLIMTGEEILDAGVQVMAQPPGKKNSTIHLLSGGEKALTAIALVFAMFQ 1090

Query: 306  LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQ-IFMT 348
            L       AP  LLDE+ A LD+        +V  +   +Q +F++
Sbjct: 1091 L-----NPAPFCLLDEVDAPLDDANTERYANMVARMSDKTQFVFIS 1131


>gi|110740719|dbj|BAE98460.1| putative chromosome associated protein [Arabidopsis thaliana]
          Length = 535

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 69/212 (32%), Gaps = 18/212 (8%)

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
               +      +++ +  +      R     E     +   + + ++ EL   ++  + E
Sbjct: 293 CSEQLQQFSHVNKKALDQYVNFTEQR----EELQNRQAELDAGDEKIKELITVLDQRKDE 348

Query: 204 MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL-FDGRKMDSMSR 262
            I      +  + +      ++      +  K        +++       +      + +
Sbjct: 349 SIERTFKGVAHHFRDVFSELVQDGYGNLIIMKKKDLDNDDEDDDDDDGGREAVTEGRVEK 408

Query: 263 RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
              +   +  +      +   +   S G++ VV + +  A           AP  L DEI
Sbjct: 409 YIGV---KVKVSFTGQGETQLMKQLSGGQKTVVALALIFA-----IQRCDPAPFYLFDEI 460

Query: 323 SAHLDEDKRNALFRIVT----DIGSQIFMTGT 350
            A LD   R A+  ++     D G+Q F+T T
Sbjct: 461 DAALDPQYRTAVGNLIRRLADDYGTQ-FITTT 491


>gi|120553499|ref|YP_957850.1| hypothetical protein Maqu_0562 [Marinobacter aquaeolei VT8]
 gi|120323348|gb|ABM17663.1| conserved hypothetical protein [Marinobacter aquaeolei VT8]
          Length = 370

 Score = 43.7 bits (102), Expect = 0.043,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 5  IKIKFLNISEFR---NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          +K+K +++  F+   N+   R+ F+   T+ +G NG GK+N++     L  
Sbjct: 1  MKLKEISVKGFKSISNHDYERIAFND-VTVLLGANGSGKSNLISLFRLLGF 50


>gi|308238071|emb|CBW37674.1| hypothetical protein [Streptococcus pneumoniae]
          Length = 466

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           + Y  +   I  GS GE     + + L    L    +    IL+LDE ++HLD+     L
Sbjct: 66  IAYVPQVKEIRDGSGGE-----ISLKL----LKEAFSSRTSILILDEPTSHLDQHNVQWL 116

Query: 335 FRIVTDIGSQIFMTGTDKSVFDSLNETAKFMR 366
              ++     I +   D+ + D++ E   F+ 
Sbjct: 117 IHRISKFDGTIILVSHDRFLLDNIIEKIVFIE 148


>gi|301024305|ref|ZP_07187995.1| hypothetical protein HMPREF9534_03826 [Escherichia coli MS 69-1]
 gi|300396630|gb|EFJ80168.1| hypothetical protein HMPREF9534_03826 [Escherichia coli MS 69-1]
          Length = 373

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          L I  +++ A L LV       F G NG GK+NI +A++F  
Sbjct: 6  LIIKGYKSIAELSLVESPPFITFAGANGAGKSNITDALAFFG 47


>gi|190341511|gb|ACE74832.1| RecN [Enterobacter cowanii]
          Length = 541

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 81/239 (33%), Gaps = 35/239 (14%)

Query: 19  ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP--SFFSTF 76
             L + F++  T   G+ G GK+  ++A+     GR     + AD+ R G+      + F
Sbjct: 2   RELEIDFNSGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVRAGAQRADLCARF 56

Query: 77  ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL 136
           A  +       +  + +  D R     ++     R    +N                + +
Sbjct: 57  ALKDTPAAQRWLE-ENQLEDGRECLLRRVISSDGRSRGFING---------------TAV 100

Query: 137 SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
            + + R L +++  I  +H  +++    +     + L +GY        +  QMAE    
Sbjct: 101 PLSQLRELGQLLIQIHGQHAHQLL----IKSEHQKTLLDGYAGEY---VLTQQMAE---- 149

Query: 197 INIARVEMINALSSLIMEYVQKENFPH-IKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
              A  +    L+    +  ++      +   L    +           +E  K+L + 
Sbjct: 150 RYRAWHQSCRELAQHQQQSQERAARAELLHYQLKELNEFSPQPGEFEQIDEEYKRLANS 208


>gi|94497004|ref|ZP_01303578.1| DNA repair protein RecN [Sphingomonas sp. SKA58]
 gi|94423680|gb|EAT08707.1| DNA repair protein RecN [Sphingomonas sp. SKA58]
          Length = 554

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 54/199 (27%), Gaps = 31/199 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I       +L L F A  ++  G+ G GK+ +L+++      R     +   + R
Sbjct: 2   LTSLAIRNVVLIEALDLEFGAGLSVLTGETGAGKSILLDSLGLALGAR-----ADTGLVR 56

Query: 67  IGSPSFFSTFARVE----------------GMEGLADISIKLETRDDRSVRCLQINDVVI 110
            G        A                    ME    + I+   + D   R   IND   
Sbjct: 57  AGEQQASVIAAFNPPAPDHPAAALLADNGIDMEPGEPLLIRRMVKADGGSRAF-INDQPC 115

Query: 111 RV--VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----MVFAIDPRHRRRMIDFER 164
               + EL   L           + +      R  LD        A+   H         
Sbjct: 116 SAALLRELGGSLVEIHGQHDDRGLLN--PRGHRAMLDTYGRCDTAAVAKAHAD-WRVAAN 172

Query: 165 LMRGRNRLLTEGYFDSSWC 183
            +      +     D  + 
Sbjct: 173 ALSQARETVATAARDRDYL 191


>gi|90962536|ref|YP_536452.1| hypothetical protein LSL_1565 [Lactobacillus salivarius UCC118]
 gi|90821730|gb|ABE00369.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118]
 gi|300215150|gb|ADJ79566.1| Putative uncharacterized protein [Lactobacillus salivarius CECT
          5713]
          Length = 679

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFD-----AQHTIFVGDNGVGKTNIL 44
          + +  + +  +R+   ++LV D        ++ +G N  GKT+ L
Sbjct: 1  MYLNEVKVKNYRSLKDVKLVLDKEKGTPNLSLIIGKNNSGKTSFL 45


>gi|47459159|ref|YP_016021.1| ATPase [Mycoplasma mobile 163K]
 gi|47458488|gb|AAT27810.1| predicted ATPase [Mycoplasma mobile 163K]
          Length = 512

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++IK L I+ ++ +      F  +    +G N  GK+ +LE I  LS  +
Sbjct: 1  MQIKSLYINNYKKFQDRFFHF-RKMNSIIGPNNSGKSTLLEII--LSFLK 47


>gi|21228804|ref|NP_634726.1| hypothetical protein MM_2702 [Methanosarcina mazei Go1]
 gi|20907323|gb|AAM32398.1| hypothetical protein MM_2702 [Methanosarcina mazei Go1]
          Length = 782

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +  + I  +R    + L    +    VG+N  GK++ L A+S    G
Sbjct: 22 MLLNSVRIENYRGLRDICLPLS-RFVCIVGENNSGKSSTLLALSLFITG 69


>gi|224140989|ref|XP_002323859.1| condensin complex components subunit [Populus trichocarpa]
 gi|222866861|gb|EEF03992.1| condensin complex components subunit [Populus trichocarpa]
          Length = 1256

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 2  TNRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFR 57
            R+ IK + +  F++Y        F    +  VG NG GK+N+++A+ F+     +  R
Sbjct: 28 APRLFIKEMIMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMR 87

Query: 58 RASYADVTR 66
              +++  
Sbjct: 88 LNKVSELIH 96


>gi|28211107|ref|NP_782051.1| transporter [Clostridium tetani E88]
 gi|28203547|gb|AAO35988.1| transporter [Clostridium tetani E88]
          Length = 249

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          ++ F  + T  VG+NG GK+ ILEAI+   
Sbjct: 43 KIEFHPKVTYIVGENGTGKSTILEAIAIAC 72


>gi|88812326|ref|ZP_01127576.1| DNA repair protein RecN [Nitrococcus mobilis Nb-231]
 gi|88790333|gb|EAR21450.1| DNA repair protein RecN [Nitrococcus mobilis Nb-231]
          Length = 553

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 66/205 (32%), Gaps = 28/205 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR--------R 58
           ++ ++I  F    ++ + F+   T   G+ G GK+ +L+A   L    G R         
Sbjct: 2   LRRIHIRNFAIVDTVEIAFEPGMTTLTGETGAGKSILLDA---LGTCLGERADSSVLPNH 58

Query: 59  ASYADV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RVVD 114
           A  A++         +     +   +   D    L     R+ R    IN   +  + + 
Sbjct: 59  AERAEIHVTFDLHDAWHAREWLRQQDLDDDDECILRRILQRNGRSQSYINGRPVPLQQLA 118

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID---FERL---MRG 168
            L   L       +   +       RRR + R +      H   +     + +    +  
Sbjct: 119 ALGGRLIGIHSQHAHQSL-------RRRDIQREILDAFGGHTTELARVGEYHQAYHRLHT 171

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAEL 193
             + L  G    +    +  Q+ EL
Sbjct: 172 AIQRLQSGQGRGAEIELLRYQVDEL 196


>gi|189191974|ref|XP_001932326.1| structural maintenance of chromosomes protein 3 [Pyrenophora
          tritici-repentis Pt-1C-BFP]
 gi|187973932|gb|EDU41431.1| structural maintenance of chromosomes protein 3 [Pyrenophora
          tritici-repentis Pt-1C-BFP]
          Length = 1206

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 7  IKFLNISEFRNY-ASLRLV-FDAQHTIFVGDNGVGKTNILEAISF 49
          IK + I  F++Y   L++  F     + VG NG GK+N   A+ F
Sbjct: 4  IKQITIQGFKSYKEQLQIEPFSPNCNVVVGRNGSGKSNFFAAVRF 48



 Score = 41.0 bits (95), Expect = 0.31,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 63/192 (32%), Gaps = 18/192 (9%)

Query: 156  RRRMIDFERLMRGRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
                    R +  R   L T      +    ++         I     ++ +A   +  +
Sbjct: 973  YENFTRQRRTLTERRAELDTSRKSIENLIDVLDQ---RKDEAIARTFKQVASAFGEVFQQ 1029

Query: 215  YVQKENFPHIKLSLTGFLDGKFD--QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSD 272
             V       + ++     D +        + +EE A +     K++  +  ++     S 
Sbjct: 1030 LV-PIGRGRLIINRKSDRDARRGGGDDASSDEEEEATQGKKS-KVEEYTGVSIAVSFNSK 1087

Query: 273  LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
                  D+   I   S G++ +  + +  A           AP  L DEI A+LD   R 
Sbjct: 1088 -----HDEQQKIGQLSGGQKSLCALALIFA-----IQKCDPAPFYLFDEIDANLDAQYRT 1137

Query: 333  ALFRIVTDIGSQ 344
            A+ +++  +  Q
Sbjct: 1138 AVAQMLEKLSGQ 1149


>gi|170077077|ref|YP_001733715.1| DNA repair protein RecN [Synechococcus sp. PCC 7002]
 gi|169884746|gb|ACA98459.1| DNA repair protein RecN [Synechococcus sp. PCC 7002]
          Length = 588

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 83/270 (30%), Gaps = 32/270 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L L   A   +  G+ G GK+ IL+A+     G+     + A + R
Sbjct: 2   LCCLRIENFALIDHLELDLQAGLMVLTGETGAGKSIILDALDLALGGK-----ATARLIR 56

Query: 67  I--------GSPSFFSTFARVEGMEGLADISIKLETRDDRSV---RCLQINDVVIRVVDE 115
                    G  +F      +         S  ++  +D +V   R L +    +R    
Sbjct: 57  AKNDQGDATGERAFIEATFSLTPSIKQWLQSQDIDLLEDETVICSRELSLTRTGLRSRSR 116

Query: 116 LNKHLRISWLVPS----MDRIFSGL-------SMERRRFLD-RMVFAIDPRHRRRMIDFE 163
           +N  +    L+      +  I +            +R  LD      +  + +   + ++
Sbjct: 117 VNGIILNQGLMAELRAQLLEITAQGQTVELLIPERQRILLDSYGGSQVQQQRQLVNLAYQ 176

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEA---QMAELGVKINIARVEMINALSSLIMEYVQKEN 220
             ++ +  L +    +      ++    Q+ EL    ++   E +  L            
Sbjct: 177 TYLKAKQLLESRRTSEQERLQRLDLLQYQLQELRDA-HLEDSEELETLQQEGDRLSHVVE 235

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
              +       L    D    A+ +   + 
Sbjct: 236 LQQLSYQAHQILYQNDDPETPAVADLLGEA 265


>gi|218782621|ref|YP_002433939.1| hypothetical protein Dalk_4794 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764005|gb|ACL06471.1| conserved hypothetical protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 696

 Score = 43.7 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 57/156 (36%), Gaps = 20/156 (12%)

Query: 5   IKIKFLNISEFRN-YASLRLVFDAQ-----HTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           + +  L I  FR  Y    + F         T+F G NG GKT +L A  +   G     
Sbjct: 1   MNLIALRIENFRQFYGVHEIEFAKGNQDQNVTVFHGYNGSGKTALLNAFIWCLYGE---T 57

Query: 59  ASYADVTRIGSPSFFSTFARVE-GMEGLADISIKLETRD-----DRSVRCLQINDVVIRV 112
               +       S     A +E G      I +    R       RS++C+++N +  R 
Sbjct: 58  TPDFE--SPDRLSSEKAIAEIEPGKSIEVSIRLSFSIRSVKYIVQRSIKCIKVNVMESRY 115

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
             E  +  ++           S     R+R++++M+
Sbjct: 116 EKEELEMWKVV---DGELETLSDSDRVRQRYINQML 148



 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 65/199 (32%), Gaps = 19/199 (9%)

Query: 166 MRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV---QKENF 221
           +  R + L     D  +      +++ E     +  R ++I              QKE+ 
Sbjct: 437 LAERLKTLNREAIDIKADTKYWNSKLKENTECQSTLRRQIIQLQVQDEKAKTIKNQKESV 496

Query: 222 PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA 281
             +  +L    + + +     L E  +K   D    D  +  T     + DL        
Sbjct: 497 ERVAEALEQIYNIQKEHVREDLAERISKIWDDAAIKDYKASITPD--FKLDLTKHVAGNP 554

Query: 282 ITIAHGSTGEQKVVLVGIFLAHAR----LISNTTGFAPI---------LLLDEISAHLDE 328
             +   STGE++V+ +    +  +     +        I         L++D     L++
Sbjct: 555 QPVHGTSTGEKQVLALSFVGSLVQKAKVNMEEAGNSPQIGIPLGGEYPLVMDSAFGSLED 614

Query: 329 DKRNALFRIVTDIGSQIFM 347
           D R  +   +  +  Q+ M
Sbjct: 615 DYRAKIAEWIPTLAHQVIM 633


>gi|262402924|ref|ZP_06079484.1| predicted ATPase possibly involved in inorganic ion transport
           [Vibrio sp. RC586]
 gi|262350423|gb|EEY99556.1| predicted ATPase possibly involved in inorganic ion transport
           [Vibrio sp. RC586]
          Length = 861

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 104/295 (35%), Gaps = 39/295 (13%)

Query: 76  FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSG 135
            A+ EG+    D+      +    V   ++N  +I     L+        +P      S 
Sbjct: 434 IAQFEGVLNELDV-----IKPGLKVGLEKLNQSLINRQAVLSGSA-----LPESLDEISL 483

Query: 136 LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
              +  R +D+ +F       ++  + E + + +   LTE   D ++       +A+   
Sbjct: 484 SHFQALREIDKELFTQIGELEQQSSNNEFVAK-KQARLTELT-DRAY-------VAKHKA 534

Query: 196 KIN--IARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
            I   + R +++  L+ +      +  +    ++   G ++         LKE + K+L 
Sbjct: 535 NIITNVRRSKIVAKLNKISDQSATRSISTLSARIYSQGVIE--------PLKESFVKELK 586

Query: 253 D---GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
                R   ++  R   G  +  L +   ++++     S GEQ+ + +  FL+       
Sbjct: 587 SFGFNRFDINVKTRNKAGQQQFKLELANSNESVVGKVASEGEQRCIAIASFLSEM----K 642

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQIFMTGTDKSVFDSLNETA 362
                  +L D+    L       + + +    +  Q+ +   D   +  L E +
Sbjct: 643 ADSRRSAVLFDDPVNSLSHQWSAKVAKRLIEESLERQVIVFTHDIVFYKLLLEAS 697


>gi|322805247|emb|CBZ02811.1| putative ATP-binding protein [Clostridium botulinum H04402 065]
          Length = 244

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + F  + T  VG+NG GK+ ILEAI+   
Sbjct: 36 IEFHPKVTYIVGENGTGKSTILEAIAIAC 64


>gi|300310633|ref|YP_003774725.1| SMC domain-containing protein [Herbaspirillum seropedicae SmR1]
 gi|300073418|gb|ADJ62817.1| SMC domain protein [Herbaspirillum seropedicae SmR1]
          Length = 937

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 95/297 (31%), Gaps = 47/297 (15%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-----SPGRGFRR-- 58
            ++ L + ++     L L  D       G NG GKT +L+A+  L     S GR ++   
Sbjct: 3   HLQSLELLQWDYCQRLTLPLDGSIITIAGPNGSGKTTLLDAMRTLLGLECSGGRSYKTYA 62

Query: 59  ----------ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                      +  D    G  +    FAR         ++ ++E       R   ++D 
Sbjct: 63  RHANADTTWLRATVDNRPHGRQTSTRPFARNLLYADQVTLACRIERNGGDWQRRYCMSDG 122

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERR---RFLDRMVFAIDP--RHR------- 156
            +  ++ L +     WL     R     +   R   R L       D             
Sbjct: 123 DV-AIETLAQLPEKDWLGLDHWRKRLEGAGLSRAIARVLALEQGQTDRLCEFSPKELLRL 181

Query: 157 --------RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
                     +  +E   R +  L  E        +  EAQ+A+L  ++ + R +    L
Sbjct: 182 VFEVFGDQEVLDRYEEARRHQRDLAAEVTLAEQELAYSEAQLAQLDSRVTLYR-QYQGKL 240

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
                E +  E  P ++         +   +   L+E + ++L    +    S  TL
Sbjct: 241 RE--RETLATEVIPVLR------WHEERQGTAHRLRELHRQRLHHNSQRRQRSSDTL 289



 Score = 36.4 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 10/83 (12%)

Query: 272 DLIVDYCDKA---ITIAHGSTGEQ--KVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
            +  ++  K    +     S G+Q  K +++        L+ +       + +DE  AHL
Sbjct: 818 KVSFNFDGKGEIGLNDGEASGGQQVIKSLIL-----LVGLLKDDDMPGGFVFIDEPFAHL 872

Query: 327 DEDKRNALFRIVTDIGSQIFMTG 349
           D      +   +    +Q  +T 
Sbjct: 873 DVRNIQLVGNFLKSTRAQYVLTT 895


>gi|319762936|ref|YP_004126873.1| chromosome segregation protein smc [Alicycliphilus denitrificans
           BC]
 gi|330825016|ref|YP_004388319.1| chromosome segregation protein SMC [Alicycliphilus denitrificans
           K601]
 gi|317117497|gb|ADU99985.1| chromosome segregation protein SMC [Alicycliphilus denitrificans
           BC]
 gi|329310388|gb|AEB84803.1| chromosome segregation protein SMC [Alicycliphilus denitrificans
           K601]
          Length = 1174

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 124/377 (32%), Gaps = 43/377 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++A         Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1   MRLNSIKLAGFKSFAEPTNFQLPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES 60

Query: 61  YADVTRIGSPSFF-STFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   G+ S   ++ A VE +   AD            I ++    R       IN+ 
Sbjct: 61  MQDVIFNGTTSRKPASRASVELIFDNADHRAGGQWNQFTEIAVKRVLTRDGTSSYYINNQ 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D         L           ++ RI      E R FL+        +++ R  
Sbjct: 121 PVRRRDVQDVFLGTGLGPRAYAIIGQGTISRIIESRPEELRLFLEEAAG--VSKYKERRR 178

Query: 161 DF-ERLMRGRNRLLTEGYFDSSW---CSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
           +   RL   R  L                +E Q AE+  K N  + ++      L     
Sbjct: 179 ETENRLADTRENLTRVEDILRELNANLEKLEKQ-AEVAAKYNALQQDVTLKQHQLWYLKR 237

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI-- 274
                   ++   G       +S  A        L   R+    +    +   +  L   
Sbjct: 238 ADAEAEQARVRTEGLQAVNDLESRMADLRSVEADLEAIRQAHYEAG-DQVNQAQGKLYEA 296

Query: 275 -VDYCDKAITIAHGSTG----EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
             +       I +   G    EQ++V +    A  +  S     A   L     A +D +
Sbjct: 297 TAEVGKLEAEIRYVVEGRQRVEQRLVQLA---AQIQDWSARKEEAEAELETLEGAGMDAE 353

Query: 330 KRNALFRI-VTDIGSQI 345
           ++  L    V +  +QI
Sbjct: 354 EQAELLAAQVEEQAAQI 370


>gi|262194925|ref|YP_003266134.1| SMC domain protein [Haliangium ochraceum DSM 14365]
 gi|262078272|gb|ACY14241.1| SMC domain protein [Haliangium ochraceum DSM 14365]
          Length = 385

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L IS +R+   + L  D +  +  G NG GK+++  +I  L+
Sbjct: 2  LSALAISGYRSLRDVVLPLD-RLNVVTGPNGSGKSSLYRSIRLLA 45


>gi|227543071|ref|ZP_03973120.1| ABC superfamily ATP binding cassette transporter, ABC protein
          [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181293|gb|EEI62265.1| ABC superfamily ATP binding cassette transporter, ABC protein
          [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 238

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++ L +  F+      L F    T+FVGDNG GK+ +LEA++ 
Sbjct: 21 VEHLPV--FQALKESPLEFSHPVTVFVGDNGAGKSTLLEALAV 61


>gi|254411276|ref|ZP_05025053.1| hypothetical protein MC7420_1767 [Microcoleus chthonoplastes PCC
          7420]
 gi|196181777|gb|EDX76764.1| hypothetical protein MC7420_1767 [Microcoleus chthonoplastes PCC
          7420]
          Length = 114

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 8/38 (21%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          ++ + ++ F++  ++ L       + +G NG GK+N++
Sbjct: 2  LQRIILNGFKSIKTMDLELRP-LNVLIGANGAGKSNLV 38


>gi|168178328|ref|ZP_02612992.1| transporter [Clostridium botulinum NCTC 2916]
 gi|182671130|gb|EDT83104.1| transporter [Clostridium botulinum NCTC 2916]
          Length = 244

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + F  + T  VG+NG GK+ ILEAI+   
Sbjct: 36 IEFHPKVTYIVGENGTGKSTILEAIAIAC 64


>gi|153814709|ref|ZP_01967377.1| hypothetical protein RUMTOR_00924 [Ruminococcus torques ATCC 27756]
 gi|317500239|ref|ZP_07958469.1| hypothetical protein HMPREF1026_00411 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087531|ref|ZP_08336463.1| DNA repair protein RecN [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145847740|gb|EDK24658.1| hypothetical protein RUMTOR_00924 [Ruminococcus torques ATCC 27756]
 gi|316898365|gb|EFV20406.1| hypothetical protein HMPREF1026_00411 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330401749|gb|EGG81327.1| DNA repair protein RecN [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 558

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 21/123 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K + + +        + F     I  G+ G GK+ +L ++     G+      
Sbjct: 1   MLQNLHVKNIALID-----ETEVDFGQGLNILTGETGAGKSILLGSVGLALGGK-----Y 50

Query: 61  YADVTRIGSPSFFS--TFARVEGMEGLA---------DISIKLETRDDRSVRCLQINDVV 109
            +D+ R G+ +     TF+  +G              D  + L  +   S    +IN   
Sbjct: 51  SSDLLRNGAENGLVELTFSVDDGQIRQKLEEMDIIPDDGMVTLTRKFTGSRSISRINGET 110

Query: 110 IRV 112
           +  
Sbjct: 111 VNT 113


>gi|118497019|ref|YP_898069.1| DNA repair protein [Francisella tularensis subsp. novicida U112]
 gi|194324254|ref|ZP_03058028.1| DNA repair protein RecN [Francisella tularensis subsp. novicida
          FTE]
 gi|118422925|gb|ABK89315.1| DNA repair protein [Francisella novicida U112]
 gi|194321701|gb|EDX19185.1| DNA repair protein RecN [Francisella tularensis subsp. novicida
          FTE]
          Length = 549

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +  L+I  F    S  + F    T+  G+ G GK+ +L+A+SF+   R
Sbjct: 2  LLHLSIKNFAIIKSTEIDFREGMTVLTGETGAGKSILLDALSFVLGAR 49


>gi|319648377|ref|ZP_08002593.1| hypothetical protein HMPREF1012_03632 [Bacillus sp. BT1B_CT2]
 gi|317389456|gb|EFV70267.1| hypothetical protein HMPREF1012_03632 [Bacillus sp. BT1B_CT2]
          Length = 668

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 63/417 (15%), Positives = 138/417 (33%), Gaps = 78/417 (18%)

Query: 5   IKIKFLNISEFRNYASL-----RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG---F 56
           + I    I+ +++Y         +    ++T+++G+NGVGK+ ILEAI      R    +
Sbjct: 1   MLISSF-INGYKSYNKAYFVPITIGLHDKYTVYIGNNGVGKSGILEAIDVFFNNREWNVY 59

Query: 57  RRASYADV--------------TRIGSPSFFSTFARVEGMEGLADISI-------KLETR 95
           + A   DV               R  + + F+     E  + +AD++         L+  
Sbjct: 60  KGAKKDDVYISPVFLINKKEFNARFENHNRFNRAEINEFQKTIADLTKISDYIWGNLDGI 119

Query: 96  DDRSVRCLQIND--VVIRVVDELNKHLRISW--------------LVPSMDRIFSGLSME 139
              S R   I+    + R +++  K                        + ++       
Sbjct: 120 VRGSSRREHIDKFFEMKRKLEDRYKEDYYLLVIGVKSNGKTTLNPFQGYLGKLIEESEKR 179

Query: 140 RRRFLDRMVFAIDPRHRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGV 195
             +    ++      +         +++       +L++    +      +  ++ E  +
Sbjct: 180 MDKIRKMILLHYSYVYISVEQRANDILKIEAEQMQKLMSRDVLE------LVDKIIEQPL 233

Query: 196 KINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
            I    +  ++ ++  + +++ + N   IK      +D ++D    A    Y K+L    
Sbjct: 234 NIEGRNINFLSYINQNLDKFMDEIN-EKIKC-----IDTRYDYGVSA---NYKKRLTRTD 284

Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
             D +            L          I+  S+GEQ+  LV I  A     +       
Sbjct: 285 LRDKILEAYF-------LKKSLRHNQREISKLSSGEQRKALVDIAYAFLSNFNQKEKE-I 336

Query: 316 ILLLDEISAHLDEDKR----NALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
           +L +DE    L+          +  +     SQI +T T    F  +    + + + 
Sbjct: 337 VLAIDEPEVSLNVANCFAQFTRIEDLANKFNSQIIIT-THWYGFLPITTKGQLIHLE 392


>gi|299065791|emb|CBJ36968.1| DNA repair protein recN (Recombination protein N) [Ralstonia
           solanacearum CMR15]
          Length = 569

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 91/255 (35%), Gaps = 35/255 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I +F    +L L      T+F G+ G GK+ +++A   L+   G R  + A V R
Sbjct: 2   LHSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDA---LALTLGER--ADATVVR 56

Query: 67  IGSPSFF---------STFARVEGME-GLADISIKLETRDDRSVR-CLQINDVVI--RVV 113
            G+P               A +E  E    D +I L    D + R    IN   +    +
Sbjct: 57  EGAPRADITAAFDTHPQVLAWLEAHELHGDDGTILLRRTVDAAGRSKAFINGAAVTLAQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNR 171
            E+ + L       +   +    +   RR LD      D       R   ++ ++R    
Sbjct: 117 REVGEQLVDIHGQHAHQLLLKTDAQ--RRLLDAHAGLEDEVRAVGERYRAWQAVVR---- 170

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            L E     S  + +E +  E   +++      +  L+    E+ ++    H +LS    
Sbjct: 171 -LREAAEQQSREAQLERERVEW--QVSE-----LQKLAPQPGEW-EEVQAEHHRLSHAAS 221

Query: 232 LDGKFDQSFCALKEE 246
           L      +   L E 
Sbjct: 222 LIEGTRAALDTLSEA 236


>gi|319765032|ref|YP_004128969.1| smc domain protein [Alicycliphilus denitrificans BC]
 gi|317119593|gb|ADV02082.1| SMC domain protein [Alicycliphilus denitrificans BC]
          Length = 945

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 27/162 (16%)

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           A+    +  AR   I  L S +  Y +       +L     ++   D       +     
Sbjct: 760 AQAATAVLNARESYIEVLRSTVRRYRKNIQ----ELGQLAGVEVAADLPLLENDD----- 810

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLI 307
                        T++      +   +  K    +     S G+Q  V+  + L    L 
Sbjct: 811 -------------TVLAQAGLKVHFAFDGKGSIGLNDGEASGGQQ--VIKSLILLVGLLK 855

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
              +G    + +DE  AHLD      +   +    +Q  +T 
Sbjct: 856 DEESGSGGFVFIDEPFAHLDVRNIQLVGHFLRSTRAQYVLTT 897



 Score = 39.9 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 68/236 (28%), Gaps = 44/236 (18%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-- 63
            ++ L +  +     + L  DA      G NG GKT +L+A+  L    G R ++  D  
Sbjct: 3   HLQTLELVHWDYCQRVSLPLDASIITIAGPNGSGKTTLLDAMRTLL---GLRCSAPRDYR 59

Query: 64  -VTRI-GSPSFFSTFARVEGMEGLADISIKLETRD------DRSVRCLQINDVVIRVVDE 115
              R  G+ + +         +G    S     R         + R  +      R    
Sbjct: 60  TYARHAGAQTAWLRAVVDNRPQGRQSSSRPFARRLLYSDQVTLACRIDRNGGDWQRRYCL 119

Query: 116 LNKHLRISWL--VPSMDRIFSGLSMERR------------RFLDRMVFAIDP--RHR--- 156
           L     I  L   P  D  F G+    R            R L       D         
Sbjct: 120 LEGDASIERLVDTPEKDLGFMGVEAWGRMLAAAGLSPAIARVLSLEQGQTDRLCEFSPRE 179

Query: 157 ------------RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                       + +  +++    + +L  E            AQ++EL  ++   
Sbjct: 180 LLRLVFDVFGDQQVLDAYDQAREHQQQLAREMAQAERELDHSRAQLSELHNRVTSY 235


>gi|281344217|gb|EFB19801.1| hypothetical protein PANDA_002977 [Ailuropoda melanoleuca]
          Length = 1050

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 18/100 (18%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 8   IESIQLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLK 67

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
              + G  S              ADISI L  R D + R 
Sbjct: 68  GFVKDGQNS--------------ADISITLRNRGDDAYRA 93


>gi|209963786|ref|YP_002296701.1| hypothetical protein RC1_0449 [Rhodospirillum centenum SW]
 gi|209957252|gb|ACI97888.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 1184

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 34/109 (31%), Gaps = 10/109 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQ---HTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           ++I  L +  + ++    L          +  G N  GK+  L+AI  L  G G      
Sbjct: 1   MRIDRLALERYGHFEDRELDLSGPDVLLHVVHGPNEAGKSTTLQAIYDLLFGFGHTT--- 57

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            D             A +   EG A   I    R  R    L  +   +
Sbjct: 58  -DYAFRHDTGSLRIGATLVNREGRA---ISFRRRKGRGDTILSADGAAL 102


>gi|159468574|ref|XP_001692449.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158278162|gb|EDP03927.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 456

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 73/238 (30%), Gaps = 47/238 (19%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ L I +F       +       +  G++G GK+ ++     L+PG G R    + V 
Sbjct: 8   RLEKLYIRDFALVTEQTVRLGPGLNVITGESGSGKSVLI----ALAPGGGLR----SRVA 59

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV------DELNKH 119
             G+PS       + G+    +         D + +   ++ +             L   
Sbjct: 60  LNGAPSSLRLLRELAGLLVDTNGQHSTLALRDPATQLELLDRIAGTAPLAAAYGSSLAAL 119

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR----------RRMIDFERLMRGR 169
             +   +  +D + +     R + L   V +   R+            R+   ERLM+  
Sbjct: 120 RAVEARLDELDELDNEGERARLQKLVDAVKSYARRYAFSAADAEATQERLSRLERLMKTA 179

Query: 170 NR-----------------------LLTEGYFDSSWCSSIEAQMAELGVKINIARVEM 204
           +                         L   Y         EAQ+ +L   I    + +
Sbjct: 180 SAAGFGGGRITTSEQLLAAAEEAGAKLAAYYEMEGQREGWEAQLMDLAADIRRRALAL 237


>gi|15643303|ref|NP_228347.1| hypothetical protein TM0537 [Thermotoga maritima MSB8]
 gi|4981051|gb|AAD35622.1|AE001729_2 hypothetical protein TM_0537 [Thermotoga maritima MSB8]
          Length = 758

 Score = 43.7 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 62/380 (16%), Positives = 126/380 (33%), Gaps = 43/380 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI+ +++  F  + +      +   I  G N  GKT +   I +   G         ++
Sbjct: 1   MKIERVHVEGFGKFENFSFPLKSGLNIIFGGNAAGKTTLANFIRYCLTGE------LPEL 54

Query: 65  --------TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
                    R G     ++  RVE  +G  D  +   T          +N    +V   L
Sbjct: 55  ENYRPWFSNRFGG-YLETSEGRVEFGQGRLDPELFSFTSFISEGVDNTLNGSK-KVASFL 112

Query: 117 NKHLRISWLVPSMDRIFSGL---SMERRRFLDRMVFAIDPRHRRRMIDFER----LMRGR 169
            +  R       ++RI +      M++ + L+  +  +  R      +  R    +++ +
Sbjct: 113 MESYRNRPEAVELERILNEDFSVLMKKTKELEAEISNLKER-VEAWKEKRRSLLLVLKRK 171

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
             L  +           E ++     + +     +   ++ +  E ++ E         T
Sbjct: 172 KELSRDLQEKRRLL---EEEIDRFESEKSERLSSIEARINEVKAELLRVEKELEEIERET 228

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH--RSDLIVDYCDKAITIAHG 287
              + K  ++      E A+KL   R+     +R +        D            +  
Sbjct: 229 AVPEEKVREAI-----ELAQKLDYLRERGEELKREIESLEEKSKDTEERLKTIMKDFSVS 283

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S  E K+ L  + L    L+ N         L+EI  HL E  R  +   + +I ++I  
Sbjct: 284 SLEELKLKLENMKL-QIELVENEQKAK----LNEIIGHLREPLRE-IDEKLEEIQAKIEN 337

Query: 348 TGTDKSVFDSLNETAKFMRI 367
           TG         ++T    R+
Sbjct: 338 TG---DHMKRFDKTLSIFRV 354


>gi|328676483|gb|AEB27353.1| DNA repair protein RecN [Francisella cf. novicida Fx1]
          Length = 549

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +  L+I  F    S  + F    T+  G+ G GK+ +L+A+SF+   R
Sbjct: 2  LLHLSIKNFAIIKSTEIDFREGMTVLTGETGAGKSILLDALSFVLGAR 49


>gi|288917595|ref|ZP_06411959.1| hypothetical protein FrEUN1fDRAFT_1654 [Frankia sp. EUN1f]
 gi|288350988|gb|EFC85201.1| hypothetical protein FrEUN1fDRAFT_1654 [Frankia sp. EUN1f]
          Length = 842

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          ++I+ L +  +  + + R+ F    T+ VG N  GK+  L+A+S L     FR   
Sbjct: 1  MRIRALGLERYGAFEARRVEFGPGLTLVVGANEAGKSTTLDALSDL--LWTFRGTR 54


>gi|222112637|ref|YP_002554901.1| smc domain-containing protein [Acidovorax ebreus TPSY]
 gi|221732081|gb|ACM34901.1| SMC domain protein [Acidovorax ebreus TPSY]
          Length = 944

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 27/162 (16%)

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           A+    +  AR   I  L S +  Y +       +L     ++   D       +     
Sbjct: 760 AQAATAVLNARESYIEVLRSTVRRYRKNIQ----ELGQLAGVEVAADLPLLENDD----- 810

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLI 307
                        T++      +   +  K    +     S G+Q  V+  + L    L 
Sbjct: 811 -------------TVLAQAGLKVHFAFDGKGSIGLNDGEASGGQQ--VIKSLILLVGLLK 855

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
              +G    + +DE  AHLD      +   +    +Q  +T 
Sbjct: 856 DEESGSGGFVFIDEPFAHLDVRNIQLVGHFLRSTRAQYVLTT 897



 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
           ++ L +  +     + L  D       G NG GKT +L+A+  L   R
Sbjct: 3  HLQTLELVHWDYCQRVSLPLDGSIITIAGPNGSGKTTLLDAMRTLLGLR 51


>gi|210623070|ref|ZP_03293557.1| hypothetical protein CLOHIR_01507 [Clostridium hiranonis DSM
          13275]
 gi|210153873|gb|EEA84879.1| hypothetical protein CLOHIR_01507 [Clostridium hiranonis DSM
          13275]
          Length = 370

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 13/63 (20%)

Query: 6  KIKFLNISEFRNYASLRLVFDA-------------QHTIFVGDNGVGKTNILEAISFLSP 52
          +++ L I   RN   +++  +                    G NG GKT+IL AI  L  
Sbjct: 5  RLENLVIKNIRNLKEVKISMEEYEDLRENNSKEYSNILGLFGPNGSGKTSILYAIDILKT 64

Query: 53 GRG 55
             
Sbjct: 65 VMS 67


>gi|208780476|ref|ZP_03247816.1| DNA repair protein RecN [Francisella novicida FTG]
 gi|208743622|gb|EDZ89926.1| DNA repair protein RecN [Francisella novicida FTG]
          Length = 549

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +  L+I  F    S  + F    T+  G+ G GK+ +L+A+SF+   R
Sbjct: 2  LLHLSIKNFAIIKSTEIDFREGMTVLTGETGAGKSILLDALSFVLGAR 49


>gi|194289799|ref|YP_002005706.1| chromosome segregation protein smc [Cupriavidus taiwanensis LMG
           19424]
 gi|193223634|emb|CAQ69641.1| Chromosome segregation protein SMC [Cupriavidus taiwanensis LMG
           19424]
          Length = 1171

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++          Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1   MRLSSIKLAGFKSFVDPTNFQVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRASELRGES 60

Query: 61  YADVT--------RIGSPSFFSTFARVEGM-----EGLADISIKLETRDDRSVRCLQIND 107
             DV         + G  S    F   EG         A++++K     D +     IN+
Sbjct: 61  MQDVIFNGSTARKQAGRASVELVFDNAEGRAAGQWSQYAEVAVKRVLTRDGTS-SYYINN 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 QPVRRRD 126



 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 12/166 (7%)

Query: 188  AQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKE 245
            A + EL       R   ++A S+ + + +   ++    I       L G FDQ      E
Sbjct: 973  AALDELAAA--RERKTFLDAQSADLNDAIGTLEDAIAKIDQETRALLQGTFDQVNHHFGE 1030

Query: 246  EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             +      G+    M+   ++      +      K  TI   S GE+ +  + +  A  +
Sbjct: 1031 LFPSLFGGGQARLIMTGEEILDAGVQVMAQPPGKKNSTIHLLSGGEKALTAIALVFAMFQ 1090

Query: 306  LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQ-IFMT 348
            L       AP  LLDE+ A LD+        +V  +   +Q +F++
Sbjct: 1091 L-----NPAPFCLLDEVDAPLDDANTERYANMVARMSDKTQFVFIS 1131


>gi|187251389|ref|YP_001875871.1| hypothetical protein Emin_0981 [Elusimicrobium minutum Pei191]
 gi|186971549|gb|ACC98534.1| hypothetical protein Emin_0981 [Elusimicrobium minutum Pei191]
          Length = 419

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 42/126 (33%), Gaps = 9/126 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV-T 65
           I  L +   +   ++ +  +       G NG GK+ +L+AI ++  G+     +   +  
Sbjct: 5   IISLQLENIKKIKAITIRPEGNFVEISGRNGQGKSTVLDAIWWVLKGKD----NIQQMPV 60

Query: 66  RIGSPSFFSTFAR----VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
           R G              +E +  + ++     T    + +          V+D+    L 
Sbjct: 61  RQGQEKGTIRLELNDLIIERVFKVNEVGTDYTTTIKVTSKDGAKYSSPQAVLDKFTGILG 120

Query: 122 ISWLVP 127
              L  
Sbjct: 121 FDPLAF 126


>gi|162456938|ref|YP_001619305.1| hypothetical protein sce8655 [Sorangium cellulosum 'So ce 56']
 gi|161167520|emb|CAN98825.1| hypothetical protein sce8655 [Sorangium cellulosum 'So ce 56']
          Length = 409

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 66/397 (16%), Positives = 127/397 (31%), Gaps = 63/397 (15%)

Query: 2   TNRIKIKFLNISEFRNYASLRLVFDAQ------HTIFVGDNGVGKTNILEAISFLSPGRG 55
              +++  L++  FR    + L             +  G NG GKT    A+        
Sbjct: 27  APGLRLTRLDVRNFRGIDEISLDLRDAQGAAIDLVVLAGANGSGKT----ALLEAILLLL 82

Query: 56  FR-------RASYADVTRIGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
            R        A   +  R G+ +       R +  + L D   +L    D   R      
Sbjct: 83  HRPEKLPRDAAPLREQIRFGAEALELRGEFRFQERDELVDFHTELRVAHDTPARS----- 137

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMID---- 161
                       LR   L P       G S + R   +   F+   +P     +++    
Sbjct: 138 ---------GNFLRAHGLEPQETLPGYGWSRDARFDANVEYFSARREPEALGEVVNPGGA 188

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINI------ARVEMINALSSLIMEY 215
              +   R R L      S++   + AQ A     +        AR    +   + +   
Sbjct: 189 RSDVEAHRLRELKR-RLISAYYRDLRAQ-ARRAKPVTEAPANGGARAAQDDGPFARLQRL 246

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIV 275
            ++ N     L +    +         L+++      D   ++   R   + P R D+  
Sbjct: 247 WERFNGAGQTLDVIPVSNDPGSGDEVVLRDD-RPVPEDVTSLEMARR---LAPARPDI-- 300

Query: 276 DYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF 335
               + + +   S+G+     V + LA A  +        +LL+DE   HL    +  L 
Sbjct: 301 ---PRMVPLDRLSSGQ-----VSL-LAFAGPLVFRDAPTDVLLIDEPEQHLHVQWQRLLI 351

Query: 336 RIVTDIG--SQIFMTGTDKSVFDSLNETAKFMRISNH 370
             + ++   +QI +    +S+ DS     +F+ + + 
Sbjct: 352 PALRELSPTTQILVATHSESILDSALSYERFILVEDE 388


>gi|120609459|ref|YP_969137.1| hypothetical protein Aave_0765 [Acidovorax citrulli AAC00-1]
 gi|120587923|gb|ABM31363.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
          Length = 365

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          ++  L +  +++ A   L   +   + +G NG GK+N +
Sbjct: 9  QLSRLVLKGYKSIAECDLPLGS-INVLIGANGAGKSNFI 46


>gi|121596398|ref|YP_988294.1| SMC domain-containing protein [Acidovorax sp. JS42]
 gi|120608478|gb|ABM44218.1| SMC domain protein [Acidovorax sp. JS42]
          Length = 944

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 27/162 (16%)

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           A+    +  AR   I  L S +  Y +       +L     ++   D       +     
Sbjct: 760 AQAATAVLNARESYIEVLRSTVRRYRKNIQ----ELGQLAGVEVAADLPLLENDD----- 810

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLI 307
                        T++      +   +  K    +     S G+Q  V+  + L    L 
Sbjct: 811 -------------TVLAQAGLKVHFAFDGKGSIGLNDGEASGGQQ--VIKSLILLVGLLK 855

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
              +G    + +DE  AHLD      +   +    +Q  +T 
Sbjct: 856 DEESGSGGFVFIDEPFAHLDVRNIQLVGHFLRSTRAQYVLTT 897



 Score = 38.3 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
           ++ L +  +     + L  D       G NG GKT +L+A+  L   R
Sbjct: 3  HLQTLELVHWDYCQRVSLPLDGSIITIAGPNGSGKTTLLDAMRTLLGLR 51


>gi|327480964|gb|AEA84274.1| ATPase involved in DNA repair [Pseudomonas stutzeri DSM 4166]
          Length = 670

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 64/161 (39%), Gaps = 7/161 (4%)

Query: 197 INIARVEMINALSSLIMEYVQKENF-PHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
           +   R++ ++A  + + E  +  +     K  L  F     +     L+ ++     +  
Sbjct: 473 LVARRLDDLHAEVNKLEEDGRAISLAERAKDVLREFSIRAREAKLKELESQFYSSFNNLA 532

Query: 256 KMDSMSRRTLIGPHRSDL-IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
           + D       I P+  ++ +VD  ++AI  +  S GE+++  + I       ++ T+G +
Sbjct: 533 RKDDRHLAIKIDPNSFEVDLVDESEQAIKKSELSAGEKQIFAISI----LEALARTSGRS 588

Query: 315 PILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGTDKSV 354
             +++D     LD   R  L          Q+ +  TD  +
Sbjct: 589 LPVVIDTPLGRLDSLHRRKLLDNYFPKTSHQVVILSTDTEI 629



 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 9/60 (15%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQ--------HTIFVGDNGVGKTNILEAISFLSPGRG 55
          + I  L++ +FR ++ S       +          +F G NG GKT IL A+     GRG
Sbjct: 1  MIIDSLSLLDFRVFSGSHNFDLVPKLKRGKPAPIVLFGGLNGGGKTTILLALKLALYGRG 60


>gi|320590923|gb|EFX03364.1| nuclear condensin complex subunit [Grosmannia clavigera kw1407]
          Length = 1522

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            RI I +L ++ F++YA    +  F A  +  VG NG GK+N+++++ F+   R    R+
Sbjct: 249 PRIVIAYLILTNFKSYAGRQEVGPFHASFSSVVGPNGSGKSNVIDSLLFVFGFRASKMRQ 308

Query: 59  ASYADVTRIGSPSFFSTFARV 79
              + +    +      +  V
Sbjct: 309 GKLSALIHNSAQYPNLDYCEV 329


>gi|227873684|ref|ZP_03991918.1| possible DNA repair protein RecN [Oribacterium sinus F0268]
 gi|227840473|gb|EEJ50869.1| possible DNA repair protein RecN [Oribacterium sinus F0268]
          Length = 558

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 87/263 (33%), Gaps = 22/263 (8%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M +R+ +K L +          + F     +  G+ G GK+ +L +I  L+ G+     +
Sbjct: 1   MLDRLLVKDLAL-----IEKSVVEFSDGLNVLTGETGAGKSILLGSIQ-LALGQ----KA 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
             D+ R G          VE    L +  ++     +  +   +   ++ R + E    +
Sbjct: 51  NKDLIRHGKEQAI-----VELDFSLTEEEVRRIQALEEDLELEEERLLIRRKISEKKSDI 105

Query: 121 RI--SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           R+    L  +  R  +G  ++     +      +  H   +  F +  +   +LL E   
Sbjct: 106 RVNDLGLTLAKLREITGGLLDLHGQHEHQSLLREGSHLEIIDGFRK--KQGGKLLEEVAN 163

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                   +  + +  +K    R   ++ L   I E          +  LT   +    +
Sbjct: 164 AYHLLQEKKRALQKFSLK-EEERTRELDFLDFEIQELADAHLSEGEEAELT--KEYSLYE 220

Query: 239 SFCALKEEYAKKLFDGRKMDSMS 261
           +   LK           +MD   
Sbjct: 221 NMDRLKSLLLSAKESLEEMDFHR 243


>gi|225567885|ref|ZP_03776910.1| hypothetical protein CLOHYLEM_03958 [Clostridium hylemonae DSM
           15053]
 gi|225163286|gb|EEG75905.1| hypothetical protein CLOHYLEM_03958 [Clostridium hylemonae DSM
           15053]
          Length = 994

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 96/294 (32%), Gaps = 47/294 (15%)

Query: 79  VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSM 138
           +   E  A+I  ++E          + + V ++  +EL++H+        +D+    L  
Sbjct: 684 INSKELFAEIQQEIERLKQEREELNRKHKVFLQKREELSRHM------SELDKEIFRLES 737

Query: 139 ERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG---- 194
           ++  + +     ++       + +   +  R+  LT+         +++ ++  LG    
Sbjct: 738 QKEGYEEASEKQMNYMWEEYEVTYNHALEIRDESLTDLARMKKQIQTLKGEIKGLGDVNV 797

Query: 195 -----VKINIARVEMIN--------------ALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
                 KI   R E +                +   + E ++K+      L     + G+
Sbjct: 798 NAIEDYKILSERYEFLKNQHDDLVEAEATLVQIIEELDEAMRKQFREQFDL-----ISGE 852

Query: 236 FDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVV 295
           FD  F  L       L      D +     I             K   +   S GE+ + 
Sbjct: 853 FDHVFKELFGGGKGTLELMEDEDILEAGIRIIAQ------PPGKKLQNMMQLSGGEKALT 906

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
            + +  A           +P  LLDEI A LD+       + +  +   +Q  +
Sbjct: 907 AIALLFA-----IQNLKPSPFCLLDEIEAALDDSNVVRFAKYLHKLTKNTQFIV 955


>gi|156363816|ref|XP_001626236.1| predicted protein [Nematostella vectensis]
 gi|156213105|gb|EDO34136.1| predicted protein [Nematostella vectensis]
          Length = 1073

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 12 ISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          I  FR+Y    +   F ++H + VG NG GK+N   AI F
Sbjct: 3  IQGFRSYRDQTIIEPFSSKHNVIVGRNGSGKSNFFFAIQF 42


>gi|119500032|ref|XP_001266773.1| DNA repair protein Rad50 [Neosartorya fischeri NRRL 181]
 gi|119414938|gb|EAW24876.1| DNA repair protein Rad50 [Neosartorya fischeri NRRL 181]
          Length = 1306

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          K+  L +  F N  S  + F    T+ VG NG GKT I+E + + + G
Sbjct: 11 KLSILGVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 58


>gi|20198135|gb|AAM15423.1| putative chromosome associated protein [Arabidopsis thaliana]
          Length = 1175

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 69/212 (32%), Gaps = 18/212 (8%)

Query: 144  LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
                +      +++ +  +      R     E     +   + + ++ EL   ++  + E
Sbjct: 933  CSEQLQQFSHVNKKALDQYVNFTEQR----EELQNRQAELDAGDEKIKELITVLDQRKDE 988

Query: 204  MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL-FDGRKMDSMSR 262
             I      +  + +      ++      +  K        +++       +      + +
Sbjct: 989  SIERTFKGVAHHFRDVFSELVQDGYGNLIIMKKKDLDNDDEDDDDDDGGREAVTEGRVEK 1048

Query: 263  RTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
               +   +  +      +   +   S G++ VV + +  A           AP  L DEI
Sbjct: 1049 YIGV---KVKVSFTGQGETQLMKQLSGGQKTVVALALIFA-----IQRCDPAPFYLFDEI 1100

Query: 323  SAHLDEDKRNALFRIVT----DIGSQIFMTGT 350
             A LD   R A+  ++     D G+Q F+T T
Sbjct: 1101 DAALDPQYRTAVGNLIRRLADDYGTQ-FITTT 1131



 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 5/100 (5%)

Query: 12  ISEFRNYAS--LRLVFDAQHTIFVGDNGVGKTNILEAISFLS--PGRGFRRASYADVTRI 67
           I  F++Y        F  +    VG NG GK+N   AI F+     +  R +        
Sbjct: 20  IEGFKSYKEQVATEEFSNKVNCVVGANGSGKSNFFHAIRFVLSDIYQNLR-SEDRHALLH 78

Query: 68  GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND 107
                    A VE +   +D    ++  + R  R + +  
Sbjct: 79  EGAGHQVVSAFVEIVFDNSDNRFPVDKEEIRLRRTVGLKK 118


>gi|17547370|ref|NP_520772.1| DNA repair protein [Ralstonia solanacearum GMI1000]
 gi|17429673|emb|CAD16358.1| probable dna repair protein [Ralstonia solanacearum GMI1000]
          Length = 569

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 93/260 (35%), Gaps = 35/260 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I +F    +L L      T+F G+ G GK+ +++A   L+   G R  + A V R
Sbjct: 2   LHSLTIRDFVIVHALDLDLADGFTVFTGETGAGKSILIDA---LALTLGER--ADATVVR 56

Query: 67  IGSPSFF---------STFARVEGME-GLADISIKLETRDDRSVR-CLQINDVVI--RVV 113
            G+P               A +E  E    D +I L    D + R    IN   +    +
Sbjct: 57  EGAPRADITAAFDTHPQVLAWLEAHELHGDDGTILLRRTVDAAGRSKAFINGAAVTLAQL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNR 171
            E+ + L       +   +    +   RR LD      D       R   ++ ++R    
Sbjct: 117 REVGEQLVDIHGQHAHQLLLKTDAQ--RRLLDAHAGLEDEVRAVGERYRAWQAVVR---- 170

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
            L E     S  + +E +  E   +++      +  L+    E+ ++    H +LS    
Sbjct: 171 -LREAAEQQSREAQLERERVEW--QVSE-----LQKLAPQPGEW-EEVQAEHHRLSHAAS 221

Query: 232 LDGKFDQSFCALKEEYAKKL 251
           L      +   L E  +  L
Sbjct: 222 LIEGTRAALDTLSEADSAVL 241


>gi|154245946|ref|YP_001416904.1| ABC transporter related [Xanthobacter autotrophicus Py2]
 gi|154160031|gb|ABS67247.1| ABC transporter related [Xanthobacter autotrophicus Py2]
          Length = 266

 Score = 43.7 bits (102), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
               +A  S G++++V +   LA             ILLLDE  + LD   R      + 
Sbjct: 158 GERAVADLSEGQKQLVCILAALAAG---------PRILLLDEPFSSLDLTTRLGFAARLA 208

Query: 340 DIGSQIFMTGTDKSVFDSLN 359
           D+  Q+ M   D  +FD  +
Sbjct: 209 DLDLQVVMASHDLHLFDGFD 228


>gi|253995857|ref|YP_003047921.1| hypothetical protein Mmol_0484 [Methylotenera mobilis JLW8]
 gi|253982536|gb|ACT47394.1| conserved hypothetical protein, putative P-loop containing
          nucleoside triphosphate hydrolase [Methylotenera
          mobilis JLW8]
          Length = 374

 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK +N++ F+ Y S       + ++F G N VGK+  ++A+   
Sbjct: 1  MNIKKINLTNFKAYQSQTFELS-KLSVFCGSNSVGKSTAIQALCIF 45


>gi|83590623|ref|YP_430632.1| DNA repair ATPase-like protein [Moorella thermoacetica ATCC 39073]
 gi|83573537|gb|ABC20089.1| ATPase involved in DNA repair-like protein [Moorella thermoacetica
           ATCC 39073]
          Length = 901

 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 6/91 (6%)

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
              +   S G Q+ ++V I LA  R +    G   +++LD+   + D  +R+ +  ++  
Sbjct: 813 PQPLDVFSVGTQEQLMVAIRLALGRFLGA--GERQLVVLDDALVNTDAGRRSRILDLLAA 870

Query: 341 IGS--QIFMTGTDKSVFDSLNETAKFMRISN 369
                QI +       +  L    +   +  
Sbjct: 871 AAEKLQIIILTCHPENYSGL--KGRLFNVEE 899



 Score = 36.8 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 5  IKIKFLN---ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
          + +  L    +  FRN  +L   FD    I  G N  GK+ ++  +  L+       +  
Sbjct: 1  MFLHSLTVAGLRRFRNPVALT-GFDPGINIIYGPNECGKSTLIWGL-ILAFLNRHNVSG- 57

Query: 62 ADVTRI 67
           ++ R 
Sbjct: 58 EEIARF 63


>gi|38233772|ref|NP_939539.1| DNA repair protein [Corynebacterium diphtheriae NCTC 13129]
 gi|38200033|emb|CAE49706.1| DNA repair protein [Corynebacterium diphtheriae]
          Length = 579

 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 72/234 (30%), Gaps = 28/234 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           +  + I       S  L      T+  G+ G GKT ++  +  L+ GR      R  S  
Sbjct: 2   LSDITIHNLGVIPSASLELSEGLTVLTGETGAGKTMVVTGLRLLAGGRAEAQRVRSGSSQ 61

Query: 63  DVT--RI-------GSPSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV 112
            V   R         S           G     +  + +        R    +    +  
Sbjct: 62  AVVEGRFLLDSVAPESAEMARAVVSAAGGALDENGEVIVSRTVSAHGRSRAHLGGRSVPA 121

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM---VFAIDPRH---RRRMIDFERLM 166
              +     +  +    D++    S  +R  LDR    + A+   +    R   +  + +
Sbjct: 122 ASLVEFSKEVLTIHGQNDQLRLLNSDRQRDALDRFSQKISALMTVYSEAYRAWKNLSKDL 181

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVK--------INIARVEMINALSSLI 212
           + R     E   +         +++E+  +        + IAR++ ++ L +  
Sbjct: 182 QERQASKRELAQEVDRLEFAIREISEVDPQPGEEADLLVQIARLQDVDDLRAQA 235


>gi|294628607|ref|ZP_06707167.1| DNA repair protein RecN [Streptomyces sp. e14]
 gi|292831940|gb|EFF90289.1| DNA repair protein RecN [Streptomyces sp. e14]
          Length = 575

 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
          ++I+ L + +        +      T   G+ G GKT ++ ++  L  GR     +   +
Sbjct: 4  MRIRSLGVID-----DAVVELSPGFTAVTGETGAGKTMVVTSLGLLLGGR-----ADPAL 53

Query: 65 TRIGSPSFFS 74
           RIG+     
Sbjct: 54 VRIGAGKAVV 63


>gi|254372379|ref|ZP_04987869.1| hypothetical protein FTCG_01603 [Francisella tularensis subsp.
          novicida GA99-3549]
 gi|151570107|gb|EDN35761.1| hypothetical protein FTCG_01603 [Francisella novicida GA99-3549]
          Length = 549

 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +  L+I  F    S  + F    T+  G+ G GK+ +L+A+SF+   R
Sbjct: 2  LLHLSIKNFAIIKSTEIDFREGMTVLTGETGAGKSILLDALSFVLGAR 49


>gi|56707987|ref|YP_169883.1| DNA repair protein recN [Francisella tularensis subsp. tularensis
          SCHU S4]
 gi|110670458|ref|YP_667015.1| DNA repair protein recN [Francisella tularensis subsp. tularensis
          FSC198]
 gi|134302221|ref|YP_001122190.1| DNA repair protein RecN [Francisella tularensis subsp. tularensis
          WY96-3418]
 gi|254370472|ref|ZP_04986477.1| DNA repair protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|56604479|emb|CAG45519.1| DNA repair protein recN [Francisella tularensis subsp. tularensis
          SCHU S4]
 gi|110320791|emb|CAL08902.1| DNA repair protein recN [Francisella tularensis subsp. tularensis
          FSC198]
 gi|134049998|gb|ABO47069.1| DNA repair protein RecN [Francisella tularensis subsp. tularensis
          WY96-3418]
 gi|151568715|gb|EDN34369.1| DNA repair protein [Francisella tularensis subsp. tularensis
          FSC033]
 gi|282159176|gb|ADA78567.1| DNA repair protein RecN [Francisella tularensis subsp. tularensis
          NE061598]
          Length = 549

 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +  L+I  F    S  + F    T+  G+ G GK+ +L+A+SF+   R
Sbjct: 2  LLHLSIKNFAIIKSTEIDFREGMTVLTGETGAGKSILLDALSFVLGAR 49


>gi|328907880|gb|EGG27643.1| DNA repair protein RecN [Propionibacterium sp. P08]
          Length = 556

 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 110/360 (30%), Gaps = 37/360 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           ++I+ L + +        L   +  T   G+ G GKT ++  I  L   +     +   +
Sbjct: 1   MRIRGLGVID-----ETLLEPSSALTAVTGETGAGKTMVVTGIGLLLGDK-----ADTGL 50

Query: 65  TRIGSPSFFSTFA-------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
            R G                RV  + G  +    +  R   + R   +         +L 
Sbjct: 51  VRHGCDRAVVEAILDAPCADRVNELGGTVEDDEVICARHITTRRSRALLGGAQVTASQLA 110

Query: 118 KHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           + +     +         +   R+     R     +     +H +   +F R +  R   
Sbjct: 111 RIVGDQVTIYGQSEQVRLVDASRQLDVVDRAAGDDLSDHLSQHAQLWSEF-RAVSQRLHR 169

Query: 173 LTEGYFDSSW-CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
           L E    +      +  ++ E+           ++I  ++ L      +E+       L 
Sbjct: 170 LNEDRAGAEMEREVLTRRVGEVDAVDPKPHEDDDLIAEIAGLQAAQSIRESLRKADALLN 229

Query: 230 GFLDGKFDQSFC-ALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAIT 283
           G       Q    AL E+   +L      D +  +   R   +    +DL       A  
Sbjct: 230 GLETSTGPQPGALALLEQAVHELDATGDADPQAAELAERARQMSYDLTDLAASVAGHAAR 289

Query: 284 IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS 343
                   Q++  +G  LA  + +          LL+  +A  D  +   L    TD+GS
Sbjct: 290 AEAD---PQRLEELGGRLAAIQRLLRARTTTLDDLLETTAA--DRRRLTELDPAATDLGS 344


>gi|325271471|ref|ZP_08137992.1| hypothetical protein G1E_01626 [Pseudomonas sp. TJI-51]
 gi|324103395|gb|EGC00721.1| hypothetical protein G1E_01626 [Pseudomonas sp. TJI-51]
          Length = 435

 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ-----HTIFVGDNGVGKTNILEAISF 49
          + +  +  S  R +    L F+        T+F+GDNG GKT IL AI+ 
Sbjct: 3  LYLSSIQFSNIRGFKDFSLSFEEGKKHRQWTVFIGDNGHGKTTILRAIAL 52


>gi|225620774|ref|YP_002722032.1| putative ATPase [Brachyspira hyodysenteriae WA1]
 gi|225215594|gb|ACN84328.1| putative ATPase [Brachyspira hyodysenteriae WA1]
          Length = 345

 Score = 43.7 bits (102), Expect = 0.047,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L+I  FR    L++        F+G     KT++LE++   S  + 
Sbjct: 2  LESLDIENFRGIKKLKIDNFKNINFFIGKANTSKTSLLESLYI-SLLKS 49


>gi|332529210|ref|ZP_08405174.1| chromosome segregation protein SMC [Hylemonella gracilis ATCC
           19624]
 gi|332041433|gb|EGI77795.1| chromosome segregation protein SMC [Hylemonella gracilis ATCC
           19624]
          Length = 1177

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + +S F+++A     +   Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1   MRLNSIKLSGFKSFAEPTNFMLPGQLVGVVGPNGCGKSNIMDAVRWVLGESRASELRGES 60

Query: 61  YADVTRIGSPSF-FSTFARVEGMEGLADI----------SIKLETRDDR-SVRCLQINDV 108
             DV   G+ S   ++ A VE +   AD            I ++    R       IN+ 
Sbjct: 61  MQDVIFNGTTSRKAASRASVELVFDNADHRAGGQWGQYAEIAVKRVLTRDGTSSYYINNQ 120

Query: 109 VIRVVD 114
            +R  D
Sbjct: 121 PVRRRD 126


>gi|330827227|ref|YP_004390530.1| SMC domain-containing protein [Alicycliphilus denitrificans K601]
 gi|329312599|gb|AEB87014.1| SMC domain protein [Alicycliphilus denitrificans K601]
          Length = 945

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 49/162 (30%), Gaps = 27/162 (16%)

Query: 191 AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           A+    +  AR   I  L S +  Y +       +L     ++   D       +     
Sbjct: 760 AQAATAVLNARESYIEVLRSTVRRYRKNIQ----ELGQLAGVEVAADLPLLENDD----- 810

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLI 307
                        T++      +   +  K    +     S G+Q  V+  + L    L 
Sbjct: 811 -------------TVLAQAGLKVHFAFDGKGSIGLNDGEASGGQQ--VIKSLILLVGLLK 855

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
              +G    + +DE  AHLD      +   +    +Q  +T 
Sbjct: 856 DEESGSGGFVFIDEPFAHLDVRNIQLVGHFLRSTRAQYVLTT 897



 Score = 39.9 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 68/236 (28%), Gaps = 44/236 (18%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-- 63
            ++ L +  +     + L  DA      G NG GKT +L+A+  L    G R ++  D  
Sbjct: 3   HLQTLELVHWDYCQRVSLPLDASIITIAGPNGSGKTTLLDAMRTLL---GLRCSAPRDYR 59

Query: 64  -VTRI-GSPSFFSTFARVEGMEGLADISIKLETRD------DRSVRCLQINDVVIRVVDE 115
              R  G+ + +         +G    S     R         + R  +      R    
Sbjct: 60  TYARHAGAQTAWLRAVVDNRPQGRQSSSRPFARRLLYSDQVTLACRIDRNGGDWQRRYCL 119

Query: 116 LNKHLRISWL--VPSMDRIFSGLSMERR------------RFLDRMVFAIDP--RHR--- 156
           L     I  L   P  D  F G+    R            R L       D         
Sbjct: 120 LEGDASIERLVDTPEKDLGFMGVEAWGRMLAAAGLSPAIARVLSLEQGQTDRLCEFSPRE 179

Query: 157 ------------RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA 200
                       + +  +++    + +L  E            AQ++EL  ++   
Sbjct: 180 LLRLVFDVFGDQQVLDAYDQAREHQQQLAREMAQAERELDHSRAQLSELHNRVTSY 235


>gi|327534676|gb|AEA93510.1| ATP-binding nuclease [Enterococcus faecalis OG1RF]
          Length = 699

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+K + +  +R+       + F+   T+ +G+N VGKT  L A++ L
Sbjct: 10 MKLKKMILKNYRSIGDDEQVIDFE-NLTMLIGNNSVGKTAALSALNKL 56


>gi|300858238|ref|YP_003783221.1| hypothetical protein cpfrc_00820 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|300685692|gb|ADK28614.1| hypothetical protein cpfrc_00820 [Corynebacterium
          pseudotuberculosis FRC41]
 gi|302205960|gb|ADL10302.1| ATP-binding protein [Corynebacterium pseudotuberculosis C231]
 gi|302330513|gb|ADL20707.1| ATP-binding protein [Corynebacterium pseudotuberculosis 1002]
 gi|308276195|gb|ADO26094.1| ATP-binding protein [Corynebacterium pseudotuberculosis I19]
          Length = 857

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF 49
          ++I  + I + R+   L L    +    +  GDN +GK+ I+EAI+ 
Sbjct: 1  MRIHAIEIQDMRSIGHLELQDLPEKGVIVISGDNELGKSTIMEAIAI 47


>gi|227488460|ref|ZP_03918776.1| ABC superfamily ATP binding cassette transporter, ABC protein
          [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227091674|gb|EEI26986.1| ABC superfamily ATP binding cassette transporter, ABC protein
          [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 238

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          ++ L +  F+      L F    T+FVGDNG GK+ +LEA++ 
Sbjct: 21 VEHLPV--FQALKESPLEFSHPVTVFVGDNGAGKSTLLEALAV 61


>gi|190341597|gb|ACE74875.1| RecN [Cronobacter dublinensis]
 gi|190341599|gb|ACE74876.1| RecN [Cronobacter dublinensis]
          Length = 553

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 23/154 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            + EL + L       +   +       ++R LD
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD 147


>gi|218438995|ref|YP_002377324.1| hypothetical protein PCC7424_2026 [Cyanothece sp. PCC 7424]
 gi|218171723|gb|ACK70456.1| conserved hypothetical protein [Cyanothece sp. PCC 7424]
          Length = 367

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 58/382 (15%), Positives = 113/382 (29%), Gaps = 72/382 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           I+ L +  FR   +  L+      ++ +G NG GK+ I   +  L               
Sbjct: 2   IQRLYVHNFRCLENFELILKEMPSSLLIGKNGSGKSTIAFVLEIL------------QNI 49

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
             G           +   G +D+ I++E                + + D+L K++    L
Sbjct: 50  GRGINRVGQLIQSKDFNRGRSDVPIRIEI--------------EVLLDDKLYKYVLALEL 95

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSW--- 182
            P   R       E R F + ++   +P + R+          +N    E  F   W   
Sbjct: 96  -PENFR-------ELRVFEEELLIQGNPIYSRQEAKVTLYKNQQNS---EAQFFVDWHLI 144

Query: 183 -CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF----- 236
               I+ Q  +  + I    +  +  L+ +            ++    G   G++     
Sbjct: 145 ALPVIQEQSEKDPLHIFKLWLARMIILAPIPSLMTGNSYGETLEPKRDGSNFGEWFSGLL 204

Query: 237 ----------DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                     DQ    +  +    L +G   D+ S         ++L +D+         
Sbjct: 205 SRYPAAYTKIDQYLREVMPDIQDFLNEGIGKDAKSMVVRFEAKSANLRIDF-------KE 257

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GS 343
            S GE+   L  + LA                 DE   +L   +       +        
Sbjct: 258 LSDGEKCFFLCAVVLAANEYY-----GPLFCFWDEPDNYLSLSEVGHFLMSLRRSFTNKG 312

Query: 344 QIFMTGTDKSVFDSLNETAKFM 365
           Q+  T  ++      +    F+
Sbjct: 313 QMITTSHNEEAIRRFSNENTFV 334


>gi|123967137|ref|YP_001012218.1| DNA repair protein RecN, ABC transporter [Prochlorococcus marinus
           str. MIT 9515]
 gi|123201503|gb|ABM73111.1| DNA repair protein RecN, ABC transporter [Prochlorococcus marinus
           str. MIT 9515]
          Length = 558

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 33/187 (17%), Positives = 67/187 (35%), Gaps = 26/187 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M  ++K+K + +        + + F+    I  GD+G GK+ IL++++ L  G       
Sbjct: 1   MLIQLKLKNIAL-----IEIIEINFEKGLNIITGDSGSGKSLILDSLNVLFGGT---NIP 52

Query: 61  YADVTRIGSPSFFS------------TFARVEGMEGLADISIKLE--TRDDRSVRCLQIN 106
              + R G                   F+R    E   +I +K +   ++++      IN
Sbjct: 53  LKHLIRPGKKECLIEAKFSNSSKLTDWFSRNGFKEISDEIFVKRQSYKKNNKIHSKYTIN 112

Query: 107 DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF----AIDPRHRRRMIDF 162
           ++ +         L +       D         RRR +D +       I+   +    +F
Sbjct: 113 NLSVNKKVLGKLGLLLVDFAGQSDTFLYDNQDYRRRIIDDLGSKRLKKINFDIKSLWQEF 172

Query: 163 ERLMRGR 169
           + L + R
Sbjct: 173 QILKKRR 179


>gi|115774659|ref|XP_797583.2| PREDICTED: similar to XCAP-C [Strongylocentrotus purpuratus]
 gi|115964743|ref|XP_001183157.1| PREDICTED: similar to XCAP-C [Strongylocentrotus purpuratus]
          Length = 1289

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--R 57
             R+ I  +    F++YA   +   F    +  +G NG GK+N+++++ F+   R    R
Sbjct: 98  QPRLMITQIMTENFKSYAGKVVLGPFHKSFSCIIGPNGSGKSNVIDSMLFVFGYRAAKIR 157

Query: 58  RASYADVTRIGSPS 71
               + +       
Sbjct: 158 SKKLSVLIHKSENH 171


>gi|312143721|ref|YP_003995167.1| DNA repair protein RecN [Halanaerobium sp. 'sapolanicus']
 gi|311904372|gb|ADQ14813.1| DNA repair protein RecN [Halanaerobium sp. 'sapolanicus']
          Length = 563

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 54/365 (14%), Positives = 113/365 (30%), Gaps = 41/365 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRASYA 62
           +  L +  F     + + F     I  G+ G GK+ I+ A+  L   R      R A  A
Sbjct: 2   LSDLQVKNFALIDQVNINFKKGLNILSGETGAGKSIIIGALDLLLGARANTDVIRTAKDA 61

Query: 63  DVTR-IGSPSFFSTFARVEGMEG----LADISIKLETRDDRSVRCLQIN--------DVV 109
                   PS       +    G       I I  E +++   R L             +
Sbjct: 62  AYISAFFQPSELEIINNILDEAGVEKEQNGILIAREIKENGRNRTLINGQLATLRMVKKI 121

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
            R + +++       L+     +    +     F+   +  +    +     ++ L R  
Sbjct: 122 SRYLIDIHGQHEHQLLLDQSSHLMILDA-----FIGSEIKELKNDIKDNYAKYQVLKREL 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
             +  +          +  Q+     +I  A ++ I    SL  +Y    +   I  + +
Sbjct: 177 AEIDIDDSERVRELDILNFQI----DEIEKANLQ-IGEYQSLKEKYQSLSHGEEIYQNTS 231

Query: 230 GFL-----DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
             L     D   +Q           KL      +   +   +  + +D+  +  +    +
Sbjct: 232 EVLNALSGDDYSEQGLLDRMAILKSKLES--LKEYNKKLAELNQNFADIYYNLEEFIFEL 289

Query: 285 A-HGST---GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
             + S+    E+++ L    L     +    G     +L E  A L E ++      + +
Sbjct: 290 GDYCSSFNYDEEELALTADRLDLLNSLFRKYGDGVEEIL-EYLAELQEKRKK--LENIEE 346

Query: 341 IGSQI 345
             +QI
Sbjct: 347 KIAQI 351


>gi|283769260|ref|ZP_06342164.1| conserved hypothetical protein [Bulleidia extructa W1219]
 gi|283104236|gb|EFC05615.1| conserved hypothetical protein [Bulleidia extructa W1219]
          Length = 436

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 63/402 (15%), Positives = 129/402 (32%), Gaps = 70/402 (17%)

Query: 6   KIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           KI  L +   +   +++L   A   T+  G N  GKT++L+AI++   G  ++ +     
Sbjct: 5   KINSLELENVKRVKAVKLEPTANGLTVVGGKNNQGKTSVLDAITWALGGEKYKPSQPE-- 62

Query: 65  TRIGSPSFFSTFARVEG-----MEGLADISIKLETRDDRSVRCL--------------QI 105
            R GS         +         G       L+    +S + L               +
Sbjct: 63  -REGSMIPPKLHIELSNGFVVERSGKNSALKVLDPTGSKSGQKLLDSFIGTFALDLPKFM 121

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSME---RRRFLDRMVFAIDPRHRRRMIDF 162
           N       + L + + +         IF     +   RR  + R+      ++   M+ +
Sbjct: 122 NSTTKDKANTLLQIIGV----GDQLTIFDKQESKLYSRRTEIGRIADQ-KKKYADEMVQW 176

Query: 163 E----------RLMRGRNRLLTEGYFDSSW---CSSIEAQ---MAELGVKINIARVEMIN 206
           +           L++ +  +LT    +       +++EAQ   + +   +   A  EM  
Sbjct: 177 DGVPEEIISASELIQQQQEILTRNGKNQELRNQVNTLEAQKTILNQRIEETTRALSEMQG 236

Query: 207 ALSSLIMEY-VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTL 265
            L+ LI +  +   N   ++   T  L+     +  +   +    L   R  +      L
Sbjct: 237 QLADLINKLVIANTNAKDLQDESTAELEKSI-ANIDSTNAKVRDNLNKQRAQEEAEEYNL 295

Query: 266 --------IGPHRSDLIVDYCDKAITIAHGS--------TGEQKVVLVG---IFLAHARL 306
                   I   R + +       + +   S         G++   + G   + +A A  
Sbjct: 296 QYDRLTEEIEAIRKERMDLLNGVEMPLHDLSVDNGELVYKGQKWDNMSGSDQLKVATA-- 353

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           I          +L +    +D D  N   + +   G Q   T
Sbjct: 354 IVRKINPKCGFVLLDKLEQMDIDTMNEFGKWLEQEGLQAIAT 395


>gi|259507160|ref|ZP_05750060.1| DNA repair protein RecN [Corynebacterium efficiens YS-314]
 gi|259165241|gb|EEW49795.1| DNA repair protein RecN [Corynebacterium efficiens YS-314]
          Length = 593

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 83/282 (29%), Gaps = 42/282 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----F 56
           M   I I+ L +       +    F +  T+  G+ G GKT ++  +  LS GR      
Sbjct: 1   MLADITIENLGV-----IPAASAEFSSGLTVLTGETGAGKTMVVTGLRLLSGGRADASRV 55

Query: 57  RRASYADVT--RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND------- 107
           R  +   V   R  + +                     E  +  +VR +  N        
Sbjct: 56  RTGARQAVVEGRFVTENAPCDIVERATGIVSNAGGCADENGEFLAVRSVSANGRSKAHLG 115

Query: 108 ---VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM---VFAIDPRH---RRR 158
              V    + E +  L          R+       +   LDR    +  +   +      
Sbjct: 116 GRSVPAATLSEFSGELLTIHGQNDQLRLL--SPERQLDALDRFLPTLSGLRKAYVEKYTT 173

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCS----SIEA------QMAELGVKINIARVEMINAL 208
             +  R ++ R     E   +          I+A      +  EL  +I   R++ ++ L
Sbjct: 174 WKELSRDLKQRVSSRRELAQEVDRLQFAINEIDAVEPTPGEDVELLAQI--RRLQDVDTL 231

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
                  +   +         G   G FD+   +  ++  + 
Sbjct: 232 REQAATALAAIDGAGALNESMGGAAG-FDEEQHSASDQLGQA 272


>gi|297570106|ref|YP_003691450.1| SMC domain protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926021|gb|ADH86831.1| SMC domain protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 360

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          ++  + +  F++     L    +  + +G NG GK+N +
Sbjct: 5  QLSRIVLQGFKSIRQCDLEL-KELNVLIGPNGAGKSNFI 42


>gi|223041567|ref|ZP_03611768.1| DNA repair protein [Actinobacillus minor 202]
 gi|198246538|gb|ACH82228.1| DNA repair protein [Actinobacillus minor 202]
          Length = 559

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 22/131 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F     L L  +   ++  G+ G GK+  ++A+      R       + + R
Sbjct: 2   LTQLTINNFAIVRHLNLELNEGMSVITGETGAGKSIGIDALGLCLGYRS-----ESSMIR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQIND-VV 109
            G+     T                   +   +   +  ++     +   +    N  + 
Sbjct: 57  NGADKADITATFQMQPDSPAYLWLKEQELLDEDNPHECILRRMINLEGRSKAFVNNRPLP 116

Query: 110 IRVVDELNKHL 120
           +  + EL ++L
Sbjct: 117 VSQLRELGQYL 127


>gi|187931289|ref|YP_001891273.1| DNA repair protein RecN [Francisella tularensis subsp.
          mediasiatica FSC147]
 gi|187712198|gb|ACD30495.1| DNA repair protein RecN [Francisella tularensis subsp.
          mediasiatica FSC147]
          Length = 549

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +  L+I  F    S  + F    T+  G+ G GK+ +L+A+SF+   R
Sbjct: 2  LLHLSIKNFAIIKSTEIDFREGMTVLTGETGAGKSILLDALSFVLGAR 49


>gi|153871149|ref|ZP_02000391.1| ATPase [Beggiatoa sp. PS]
 gi|152072383|gb|EDN69607.1| ATPase [Beggiatoa sp. PS]
          Length = 373

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ------HTIFVGDNGVGKTNILEAISF 49
          + IK + IS+++    L++             +  G NG GKT++L+ I+F
Sbjct: 1  MYIKEIYISDYKILTDLKIQLQPPPQSQNSVNVIAGINGTGKTSLLKGIAF 51


>gi|153870418|ref|ZP_01999825.1| ATPase [Beggiatoa sp. PS]
 gi|152073119|gb|EDN70178.1| ATPase [Beggiatoa sp. PS]
          Length = 140

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 12/106 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS----FLSPGRG----FRR 58
           +K + I  F+   +  L  ++   + +G NG GKT +  A+     F+  G+     F+ 
Sbjct: 2   LKRIYIDNFKCLVNFELTVES-MNLLLGANGTGKTTLFLALHKLQQFIVEGKTVTELFKS 60

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
           A+   +T+    S  S    + G  G+   S+ +E + +++   +Q
Sbjct: 61  AN---LTKWQDLSVQSFELEIAGNGGVYKYSLAIEHQREKTRSRIQ 103


>gi|124005545|ref|ZP_01690385.1| DNA repair protein RecN [Microscilla marina ATCC 23134]
 gi|123988979|gb|EAY28572.1| DNA repair protein RecN [Microscilla marina ATCC 23134]
          Length = 552

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 18/191 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +  L I  +     L +       I  G+ G GK+ +L AI  L    +  +        
Sbjct: 2   LTNLLIKNYALIEQLMVKPHQSLNIITGETGAGKSILLGAIGMLMGKRADTKTLLYHDSK 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-----SVRCLQINDVVIR--VVDE 115
            +      +F     ++ G+    DI  + ET   R           IND  +   ++ +
Sbjct: 62  CII---EGAFLIGSYQLHGLFEELDIDYEEETTIRREITPSGKSRAFINDTPVNLDILRQ 118

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDFERLMRGRNRLL 173
           + +HL    +    D +     + + R +D      A+  R+  +  ++  + +  ++L+
Sbjct: 119 VGRHL--VDIHSQHDNLLLSDHLFQLRIVDVCAENQALMKRYTAKYKEYRTVKKKHDQLV 176

Query: 174 TEGYFDSSWCS 184
            E     +   
Sbjct: 177 EEYNQHKNELD 187


>gi|189423507|ref|YP_001950684.1| SMC domain protein [Geobacter lovleyi SZ]
 gi|189419766|gb|ACD94164.1| SMC domain protein [Geobacter lovleyi SZ]
          Length = 242

 Score = 43.7 bits (102), Expect = 0.048,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 16 RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          RN     L F +  T FVG+NG GK+ ++E+I+ L+ G  
Sbjct: 31 RNIN--TLQFHSGVTFFVGENGAGKSTLIESIA-LAMGFS 67


>gi|326335085|ref|ZP_08201284.1| hypothetical protein HMPREF9071_0750 [Capnocytophaga sp. oral
          taxon 338 str. F0234]
 gi|325692749|gb|EGD34689.1| hypothetical protein HMPREF9071_0750 [Capnocytophaga sp. oral
          taxon 338 str. F0234]
          Length = 261

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFR 57
            L+++ ++ + +++L       I +G NG GK+N +     L+    R  R
Sbjct: 2  NHLHLTGYKTFKNIQLDLSP-INILIGANGSGKSNFISFFELLNRLYNRSLR 52


>gi|326202804|ref|ZP_08192671.1| hypothetical protein Cpap_2113 [Clostridium papyrosolvens DSM
          2782]
 gi|325986881|gb|EGD47710.1| hypothetical protein Cpap_2113 [Clostridium papyrosolvens DSM
          2782]
          Length = 664

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 16/40 (40%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +KI  L++  F         F     +  G N  GK+ ++
Sbjct: 1  MKIDRLHVRGFGKLEDFTCDFSDGLNVIYGHNESGKSTLM 40


>gi|225621406|ref|YP_002722665.1| hypothetical protein BHWA1_02508 [Brachyspira hyodysenteriae WA1]
 gi|225216227|gb|ACN84961.1| conserved hypothetical protein [Brachyspira hyodysenteriae WA1]
          Length = 443

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 56/387 (14%), Positives = 129/387 (33%), Gaps = 50/387 (12%)

Query: 11  NISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRASY 61
            +  +++     +          +  I  G+NG GK+N ++A   L      + ++ A  
Sbjct: 6   KLKNYKSLVDFEVDLTSSKNNPKKMIIIYGENGAGKSNFIDAFFTLFDTLNTKIYKTALD 65

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
             ++                 + L D    L+T  +++      +++V+    +LN    
Sbjct: 66  KFMSENSDDKKNKKELEFFFNKVLKDNFKNLDTIIEKNKTIGSKDNMVLEFGFKLNGKNG 125

Query: 122 ISWLVPSMDRIFSG-----LSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
           I  +    + I        L   + ++ +  + + D      +   ++ +     L  + 
Sbjct: 126 IYHIETDNENIVKEKLEYVLDKNKTKYFELSINSKDNYINPSLFKSDKYLNEIKDLTDKF 185

Query: 177 YFDSSWCSSI-----EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT-- 229
           +   S+ S +     +     +   IN    E+I   SS+ +      N    K+S+   
Sbjct: 186 WGKHSFLSILLFEQEDKTTKYISKNINNNIFEVIKYFSSMSIHIKNGSNIEKGKISVDKK 245

Query: 230 ------------------GFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
                                +   +  F A+  +  K  +     D      L    + 
Sbjct: 246 FISIMDNGSIKINEKEKLNHTEKILNNFFTAIYSDIKKVYYKTEIKDDKLHYNLFI--KK 303

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL-DEDK 330
            +     D  I     STG QK+    + L    LI ++     ++ +DE+ + + D   
Sbjct: 304 QIYGKIID--IDFKLESTGTQKL----LRL--FPLILSSMKKNNVVAIDELDSGIHDILT 355

Query: 331 RNALFRIVTDIGSQIFMTGTDKSVFDS 357
            + L  +  +I  Q  +T  + ++ +S
Sbjct: 356 ASILESLFNNIKGQFILTTHNTTILES 382


>gi|169350495|ref|ZP_02867433.1| hypothetical protein CLOSPI_01263 [Clostridium spiroforme DSM
          1552]
 gi|169292815|gb|EDS74948.1| hypothetical protein CLOSPI_01263 [Clostridium spiroforme DSM
          1552]
          Length = 551

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ + I  F     L++ F  Q T+  G+ G GK+ I++AI  L   R 
Sbjct: 2  LESIYIENFAIIDQLQIDFHDQMTVLTGETGAGKSIIIDAIGQLCGNRS 50


>gi|148654304|ref|YP_001274509.1| DNA repair protein RecN [Roseiflexus sp. RS-1]
 gi|148566414|gb|ABQ88559.1| DNA repair protein RecN [Roseiflexus sp. RS-1]
          Length = 599

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNIS+F     L L F     +  G+ G GK+ I++A   L   RG R        R
Sbjct: 2  LLELNISDFAIIERLNLRFCDGFNVLTGETGAGKSIIIDA---LGTLRGERT--DPSFVR 56

Query: 67 IGSPSFFSTFARVEGMEGLAD 87
           GS       ARVEG+  +AD
Sbjct: 57 AGSER-----ARVEGIFSIAD 72


>gi|78187714|ref|YP_375757.1| ATP-dependent OLD family endonuclease [Chlorobium luteolum DSM
          273]
 gi|78167616|gb|ABB24714.1| ATP-dependent endonuclease of the OLD family-like protein
          [Chlorobium luteolum DSM 273]
          Length = 595

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +  ++IS FR+   +     A  T FVG N  GK+N+L AI
Sbjct: 4  LSRISISNFRSCQQVDFALAA-FTPFVGYNNAGKSNLLAAI 43


>gi|298712757|emb|CBJ33353.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 442

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  L+I   R++       + F    T+ VG NG GKT I+E + +   G
Sbjct: 4  IHKLSIRGIRSFSHEREQVIEFYTPLTMIVGANGCGKTTIIECLKYACTG 53


>gi|291563347|emb|CBL42163.1| hypothetical protein CK3_26360 [butyrate-producing bacterium SS3/4]
          Length = 677

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I  F N  ++ L F  + T+  G+N  GKT I +A    +        S AD  R
Sbjct: 6   LRQLKIENFGNIKAIELQFGKR-TVIRGENESGKTTIGDA-YSWTMTNSLMNGSQADKIR 63

Query: 67  -IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
              +      +  +     L      +E +  ++   ++    
Sbjct: 64  PHDASGKDVDYVDIVATVTLDIDGRTVEIQKTQAQDWVKKTGE 106


>gi|284175246|ref|ZP_06389215.1| conserved repeat domain protein [Sulfolobus solfataricus 98/2]
          Length = 1084

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 20/119 (16%)

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
           R+ +       + P   +L      K       S G+Q+ V +   LA            
Sbjct: 121 RRREKAEEILSMIPGMLEL------KNKKPNELSGGQQQRVAIARALA---------NDP 165

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMTGTDKSVFDSLNETAKFMRISNH 370
            ILL DE +A+LD     A+  ++  +  Q     +  T     D +    + + I + 
Sbjct: 166 KILLADEPTANLDSKTGEAIVELIKKLNEQRGVTVVMATHD--PDMMKYADRIIYIRDG 222


>gi|206890604|ref|YP_002248768.1| DNA repair protein RecN [Thermodesulfovibrio yellowstonii DSM
          11347]
 gi|206742542|gb|ACI21599.1| DNA repair protein RecN [Thermodesulfovibrio yellowstonii DSM
          11347]
          Length = 547

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 4/80 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I+ L I  F    SL +       +  G+ G GK+ I++AI  L   +        D  +
Sbjct: 2  IEELRIKNFAIIDSLVVPLSKGFNVITGETGAGKSIIVDAIGILLKEK----VPAVDFIK 57

Query: 67 IGSPSFFSTFARVEGMEGLA 86
           G           +  E  +
Sbjct: 58 HGKNEANIEVIIYDTNEKES 77


>gi|328675559|gb|AEB28234.1| DNA repair protein RecN [Francisella cf. novicida 3523]
          Length = 549

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +  L+I  F    S  + F    T+  G+ G GK+ +L+A+SF+   R
Sbjct: 2  LLHLSIKNFAIIKSTEIDFRDGMTVLTGETGAGKSILLDALSFVLGAR 49


>gi|315652712|ref|ZP_07905686.1| hypothetical protein HMPREF0381_2680 [Eubacterium saburreum DSM
          3986]
 gi|315484914|gb|EFU75322.1| hypothetical protein HMPREF0381_2680 [Eubacterium saburreum DSM
          3986]
          Length = 1109

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYA 62
          ++K L++  + N+    + F    T  +G N VGKT I++A+   L+  + F  A   
Sbjct: 3  RMKRLHLINWHNFQDDIIDF-KNITYLLGVNAVGKTTIMDAVRYCLTTNKDFNTAGNK 59


>gi|325981744|ref|YP_004294146.1| chromosome segregation protein SMC [Nitrosomonas sp. AL212]
 gi|325531263|gb|ADZ25984.1| chromosome segregation protein SMC [Nitrosomonas sp. AL212]
          Length = 1183

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++ ++ ++ F+++A    +         VG NG GK+N+++A+ ++   S     R  S
Sbjct: 1  MRLAYIKLAGFKSFAEPTTVPISHDLVGIVGPNGCGKSNVIDAVRWVLGESKASALRGDS 60

Query: 61 YADVTRIGSPS 71
            DV   GS +
Sbjct: 61 MQDVIFSGSEN 71


>gi|289807103|ref|ZP_06537732.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 183

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67  IGS--PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            G+      + FA  +    L  +  + +  + R     ++     R    +N 
Sbjct: 57  TGATRADLCARFALKDTPAALRWLE-ENQLEEGRECLLRRVISSDGRSRGFING 109


>gi|187779045|ref|ZP_02995518.1| hypothetical protein CLOSPO_02640 [Clostridium sporogenes ATCC
          15579]
 gi|187772670|gb|EDU36472.1| hypothetical protein CLOSPO_02640 [Clostridium sporogenes ATCC
          15579]
          Length = 252

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + F  + T  VG+NG GK+ ILEAI+   
Sbjct: 44 IEFHPKVTYIVGENGTGKSTILEAIAIAC 72


>gi|170761193|ref|YP_001786315.1| hypothetical protein CLK_0367 [Clostridium botulinum A3 str. Loch
          Maree]
 gi|169408182|gb|ACA56593.1| conserved hypothetical protein [Clostridium botulinum A3 str.
          Loch Maree]
          Length = 244

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + F  + T  VG+NG GK+ ILEAI+   
Sbjct: 36 IEFHPKVTYIVGENGTGKSTILEAIAIAC 64


>gi|169634565|ref|YP_001708301.1| protein used in recombination and DNA repair [Acinetobacter
           baumannii SDF]
 gi|169153357|emb|CAP02474.1| protein used in recombination and DNA repair [Acinetobacter
           baumannii]
          Length = 555

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 24/184 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVR-CLQINDVV--IR 111
            GS     T                E         I L      + R    +N     + 
Sbjct: 57  YGSDKADVTAIFTYQDNSPEAKWLKEHELDDDSGEIHLRRVIFATGRSKAWVNGRPSSLS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRGR 169
            + EL + L   +   S  ++        + +LDR    +A     R     ++R +R  
Sbjct: 117 ELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDRYSNFYAEANDVREAYSTWQRNIRQH 174

Query: 170 NRLL 173
              L
Sbjct: 175 QAAL 178


>gi|70605899|ref|YP_254769.1| hypothetical protein Saci_0046 [Sulfolobus acidocaldarius DSM 639]
 gi|68566547|gb|AAY79476.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
          Length = 581

 Score = 43.7 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 72/186 (38%), Gaps = 23/186 (12%)

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
           R   L +   D      +E Q+ +LG  I     E I +L   I +  ++ +        
Sbjct: 402 RIEELRKRRSD------LELQLQQLG--IPKKVAEEIESLKKQIDDINKQID-------- 445

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGS 288
              ++ ++ +    +KEE+ + L +    +     T     +  L++      + +   S
Sbjct: 446 --DINREYIRRLTVVKEEF-ETLSNSILKELEFNYTAEIDEKYRLVIKKDGVTMELRRLS 502

Query: 289 TGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           T E+  + + + L            AP  ++DE     D+ + + + + +  I   + +T
Sbjct: 503 TSEKTTLALILILVGL----KEYFKAPFFIIDESFMTFDQKRFSRVLKYLNGIVDYVIIT 558

Query: 349 GTDKSV 354
            +D+++
Sbjct: 559 KSDETL 564



 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 86/259 (33%), Gaps = 22/259 (8%)

Query: 19  ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFAR 78
             L L  +   TI+   N  GKT++ +A+  L         +  D+  + S   F     
Sbjct: 13  RELVLSLEKGITIYRAPNAYGKTSLSKALVSLLTNE----ITAEDLLNVFSDEGF---VE 65

Query: 79  VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS-----------WLVP 127
           +E         +K         + L  +D    ++   +    +            W + 
Sbjct: 66  IEMDGKKYFRRLKRIKNRILEEKNLIADDKNATLLSYFSPENPLIARIITGDENIEWFIS 125

Query: 128 SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIE 187
           S  RI       RR  L   +  +   +   +  ++ + +  N L              E
Sbjct: 126 STSRI--DELKRRRESLIMKLEEVKSNYNNLLRTYDDIKKIANELENINLEIERLEKEKE 183

Query: 188 AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS-LTGFLDGKFDQSFCALKEE 246
               +    I I R   I  +   I   +++      K+  LT  L+    ++   LK++
Sbjct: 184 NVTVQTEQTIKITRQNRIVEIRERIQAKIKELKEKETKIQKLTQELEELKGKANIELKDK 243

Query: 247 YAKKLFD-GRKMDSMSRRT 264
             K++ +  R++DS+  R 
Sbjct: 244 LTKEIQEIDRELDSLINRQ 262


>gi|256838863|ref|ZP_05544373.1| ATP-binding protein [Parabacteroides sp. D13]
 gi|301308085|ref|ZP_07214039.1| probable ATP-binding protein [Bacteroides sp. 20_3]
 gi|256739782|gb|EEU53106.1| ATP-binding protein [Parabacteroides sp. D13]
 gi|300833555|gb|EFK64171.1| probable ATP-binding protein [Bacteroides sp. 20_3]
          Length = 345

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          I  + ++ F  +A+ R  F     + +G NG GKT++L+ +
Sbjct: 2  INSILLTNFTGFANNRFDFTEGVNVLIGKNGTGKTHVLKCL 42


>gi|75908420|ref|YP_322716.1| hypothetical protein Ava_2201 [Anabaena variabilis ATCC 29413]
 gi|75702145|gb|ABA21821.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
          Length = 690

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQ----HTIFVGDNGVGKTNILEA 46
          +K+  + +  FR++   +  +V         TI  G+NG GKT++L A
Sbjct: 1  MKLTSIKLCNFRSFYGRTPEIVIAGGDVLNTTIIHGNNGSGKTSLLNA 48


>gi|82595351|ref|XP_725813.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23480956|gb|EAA17378.1| unnamed protein product [Plasmodium yoelii yoelii]
          Length = 1919

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYAS---LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  + I   R+Y      +L F +  TI  G+NG GK+ I+E +     G
Sbjct: 33 LDKIGIQGIRSYCDEYPQQLEFSSPITIIYGNNGSGKSTIIECLKVNCTG 82


>gi|317498201|ref|ZP_07956502.1| ATP-binding protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894556|gb|EFV16737.1| ATP-binding protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 236

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 11 NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
           I   +N     L F      FVG+NG GK+ +LEAI+ 
Sbjct: 24 QIEALKNIER--LEFKNSINFFVGENGSGKSTLLEAIAI 60


>gi|190341601|gb|ACE74877.1| RecN [Cronobacter dublinensis]
          Length = 553

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 23/154 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            + EL + L       +   +       ++R LD
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD 147


>gi|163785127|ref|ZP_02179829.1| recombination protein RecN [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879605|gb|EDP73407.1| recombination protein RecN [Hydrogenivirga sp. 128-5-R1-1]
          Length = 223

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 67/192 (34%), Gaps = 18/192 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I +F     + L       +F G+ GVGK+ I++AISF+   +G          +
Sbjct: 2   LSKIKIGKFLYIKDIELELTDGLNVFTGETGVGKSLIVDAISFVLGKKG----------K 51

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHLRISW 124
                +          +   D  + L            +N        + E ++ +    
Sbjct: 52  YSEGDYVELSFENVDNQYAEDGLLFLAREVKNGKSYYYVNGKRATLSTLKEASEGIIAIH 111

Query: 125 LVPSMDRIFSGLSMERRRFLDRMVFAID---PRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
                  +F+    E  + LD+    ID    ++R+   +++ L +    L+ +      
Sbjct: 112 GQHHQQALFNR--KEHIKMLDK-YAQIDDLLEKYRKLYKEYKSLEKEEQELIQQQSNRLR 168

Query: 182 WCSSIEAQMAEL 193
               ++ Q+ EL
Sbjct: 169 ELDILKYQLQEL 180


>gi|254369071|ref|ZP_04985084.1| hypothetical protein FTAG_00918 [Francisella tularensis subsp.
          holarctica FSC022]
 gi|157121992|gb|EDO66162.1| hypothetical protein FTAG_00918 [Francisella tularensis subsp.
          holarctica FSC022]
          Length = 549

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +  L+I  F    S  + F    T+  G+ G GK+ +L+A+SF+   R
Sbjct: 2  LLHLSIKNFAIIKSTEIDFREGMTVLTGETGAGKSILLDALSFVLGAR 49


>gi|149728135|ref|XP_001501978.1| PREDICTED: similar to SMC6 structural maintenance of chromosomes
           6-like 1 [Equus caballus]
          Length = 1101

 Score = 43.7 bits (102), Expect = 0.050,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 18/100 (18%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYA 62
           I+ + +  F  ++ L    F +     VG+NG GK+ +L A+     G+     R +S  
Sbjct: 54  IESIQLRNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGKAVATNRGSSLK 113

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
              + G  S              ADISI L  R D + + 
Sbjct: 114 GFVKDGQNS--------------ADISITLRNRGDDAYKA 139


>gi|322692510|gb|EFY84416.1| DNA repaire protein UVS6 [Metarhizium acridum CQMa 102]
          Length = 1307

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 98/302 (32%), Gaps = 68/302 (22%)

Query: 6   KIKFLNISEFRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-------- 54
           +I  L+IS  R+++      + F+   T+ VG NG GKT I+E + + + G         
Sbjct: 3   RIDKLSISGVRSFSPSVREAIQFNTPLTLIVGYNGSGKTTIIECLKYATTGELPPNSKGG 62

Query: 55  --------------------GFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLET 94
                                FR  +        + S   T  +    +   D S+ +  
Sbjct: 63  AFIHDPKLCGEKEVMAQVKLQFRSINDRQHVA--TRSLQLTVKKTTRSQKTLDCSLVVVN 120

Query: 95  RDDR---SVRCLQINDVVIRVVDELNKHLRISWLVPSMDRI--FSGLSMERRRFLDRM-- 147
             +R   S R  Q+++++   +      L         + +   S  +  ++RF +    
Sbjct: 121 NGERTTTSTRQAQLDEMIPERLGVSPAILDAVIFCHQDESLWPLSEPAALKKRFDEIFEA 180

Query: 148 ---------VFAIDPRHRRRMID------FERLMRGR--------NRLLTEGYFDSSWCS 184
                    +  +  +H  ++          +  + R          L  E       C 
Sbjct: 181 LKYTKAIDNLKVLRKKHVEQLGKLQNDEAHNKANKDRGERAEKRMTGLQAEIEDAREKCE 240

Query: 185 SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALK 244
           ++ A+M E   KI     +     ++  ++ VQ       +L        +  Q+F  L 
Sbjct: 241 ALSAEMQETHDKIRRKYEQ-----ANSFLQIVQNVGNKKEQLEYRQDAVNELKQTFDELH 295

Query: 245 EE 246
           E+
Sbjct: 296 ED 297


>gi|313201624|ref|YP_004040282.1| DNA repair protein recn [Methylovorus sp. MP688]
 gi|312440940|gb|ADQ85046.1| DNA repair protein RecN [Methylovorus sp. MP688]
          Length = 551

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 69/200 (34%), Gaps = 14/200 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F     L L FD   T+  G+ G GK+ +++A+S     RG    + +   R
Sbjct: 2   LQTLTIRDFVIVDQLNLEFDRGFTVLTGETGAGKSILIDALSLALGARGEGGVTRSGCDR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND----------VVIRVVDEL 116
               + F      +  + L +  +  + +     R +  +             ++ + E 
Sbjct: 62  ADISASFDIAGLPDLQQWLDEHELPSDDQQLLLRRVIYADGRSKAFIGGMPATVQQLREA 121

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRNRLLT 174
            + L   +   +   +    +  +R+ LD       +     +    +  L   R     
Sbjct: 122 GEFLVDIYSQHAHHSLLK--TSYQRQTLDLYAGQSALAADVAQHFHAWHALHERRLAAEQ 179

Query: 175 EGYFDSSWCSSIEAQMAELG 194
                +   + +  Q+ ELG
Sbjct: 180 NAAAYADELAELRDQLRELG 199


>gi|190341595|gb|ACE74874.1| RecN [Cronobacter dublinensis]
          Length = 553

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 23/154 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            + EL + L       +   +       ++R LD
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD 147


>gi|224457071|ref|ZP_03665544.1| DNA repair protein RecN [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|254874788|ref|ZP_05247498.1| DNA repair protein recN [Francisella tularensis subsp. tularensis
          MA00-2987]
 gi|254840787|gb|EET19223.1| DNA repair protein recN [Francisella tularensis subsp. tularensis
          MA00-2987]
          Length = 547

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +  L+I  F    S  + F    T+  G+ G GK+ +L+A+SF+   R
Sbjct: 2  LLHLSIKNFAIIKSTEIDFREGMTVLTGETGAGKSILLDALSFVLGAR 49


>gi|171059195|ref|YP_001791544.1| chromosome segregation protein SMC [Leptothrix cholodnii SP-6]
 gi|170776640|gb|ACB34779.1| chromosome segregation protein SMC [Leptothrix cholodnii SP-6]
          Length = 1170

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + +S F+++A         Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1   MRLNSIKLSGFKSFAEPTHFQLPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGM-EGLADISIKLETRDDRSVRCLQIND 107
             DV   GS +            F +  AR  G      +I++K     D +     IN+
Sbjct: 61  MQDVIFNGSGNRKPASRASVELIFDNASARAGGQWNQFTEIAVKRVLTRDGTS-SYYINN 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 QPVRRRD 126


>gi|302387562|ref|YP_003823384.1| DNA repair protein RecN [Clostridium saccharolyticum WM1]
 gi|302198190|gb|ADL05761.1| DNA repair protein RecN [Clostridium saccharolyticum WM1]
          Length = 552

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 46/122 (37%), Gaps = 22/122 (18%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + + ++ L +          + F     +  G+ G GK+ I+ +++    G+     +
Sbjct: 1   MLSELHVRNLAL-----IEKADVEFGQGFNVLTGETGAGKSIIIGSVTIALGGK-----T 50

Query: 61  YADVTRIGSP-SFFSTFARVEGMEGLA-----------DISIKLETRDDRSVRCLQINDV 108
             D+ R G+  ++      V  +E +            D ++ +  +   S    +IND 
Sbjct: 51  PKDIIRKGAEYAYIELIFSVRDLEKVRLLKEMDVYPDGDGTVIISKKIMPSRSLSKINDE 110

Query: 109 VI 110
            +
Sbjct: 111 TV 112


>gi|251810840|ref|ZP_04825313.1| nitric-oxide reductase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805675|gb|EES58332.1| nitric-oxide reductase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 266

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 13/246 (5%)

Query: 18  YASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTF 76
           +   + +F     I + G  G GKT + E +S +      +     D+       F +  
Sbjct: 17  FEDAKALFQLNKNILLKGPTGSGKTKLAETLSHVMKLPMHQVNCSVDLDTESLLGFKTIH 76

Query: 77  ARVEGMEGL--ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL--RISWLVPSMDRI 132
              EG + +   D  +    ++   +   +IN      +  LN  L  R     P    +
Sbjct: 77  TNEEGHQKIVFIDGPVIKAMKEGHILYIDEINMAKPETLPILNGVLDYRRQLTNPYTGEV 136

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS-SIEAQMA 191
                         ++ AI+  +   +      ++ R  ++   Y D       I+ Q  
Sbjct: 137 IKAAPGF------NVIAAINEGYVGTLP-MNEALKNRFIVIEVDYIDGDILKTVIKEQSK 189

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
               ++    V+    L ++  +    E    I+  +             A++     KL
Sbjct: 190 LQDEQLIQHIVKFNEDLRTMTKQGQISEEAASIRALIDLSDLATVMPIERAVQRTIIDKL 249

Query: 252 FDGRKM 257
            D R+ 
Sbjct: 250 EDEREQ 255


>gi|295674137|ref|XP_002797614.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226280264|gb|EEH35830.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1201

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 95/303 (31%), Gaps = 23/303 (7%)

Query: 57   RRASYADVTRIGSPSFFSTFARV-EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            R     +    GS        R  +    L D++  +E    R  + +Q    + +   E
Sbjct: 871  RLKKLEESVEKGSAEMAQLEQRKSDIKRDLEDLARSIEKHQRRMEKNMQKKAALTKQAAE 930

Query: 116  LNKHLRISWLVPSM-DRIFSGLSME----RRRFLDRMVFAIDPRHRRRMIDFERLMRGRN 170
             + ++R   ++P      F          R   ++  +      +++         + R 
Sbjct: 931  CSANIRDLGVLPDDAFTKFKNTDSNTVVKRLHKVNEALKKYSHVNKQAFEQHNGFTKQRE 990

Query: 171  RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG 230
             L        S   SIE       + +   R +    L+   +     + F  +  +  G
Sbjct: 991  TLTKRREELDSSQKSIEEL-----ITVLDHRKDAAIELTFKQVSREFAQIFEKLVPAGRG 1045

Query: 231  FLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTG 290
             L  +      A +   A +L    +    S    +G   S       D+   I   S G
Sbjct: 1046 RLIIQRKTDHAARQ---ADELGSDEEEARNSVENYVGVGISVSFNSKHDEQQRIQQLSGG 1102

Query: 291  EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT----DIGSQIF 346
            ++ +  + +  A           AP  L DEI A+LD   R A+ +++     +   Q  
Sbjct: 1103 QKSLCALALVFA-----IQACDPAPFYLFDEIDANLDAQYRTAVAQMLKSISEETNGQFI 1157

Query: 347  MTG 349
             T 
Sbjct: 1158 CTT 1160



 Score = 41.0 bits (95), Expect = 0.33,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 9/103 (8%)

Query: 17  NYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADVTRIGSPSFF 73
           NY    +   F  +H + VG NG GK+N   AI   LS                      
Sbjct: 15  NYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRFVLSDAYTHMGREERQTLLHEGSGSA 74

Query: 74  STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
              A VE +   +D       R     + L +   +    DE 
Sbjct: 75  VMSAYVEIIFDNSD------ERFPTGKKELILRRTIGTKKDEY 111


>gi|190341593|gb|ACE74873.1| RecN [Cronobacter dublinensis]
          Length = 553

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 57/154 (37%), Gaps = 23/154 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F+A  T   G+ G GK+  ++A+     GR     +  D+ R
Sbjct: 2   LAQLTISNFAIVRELEIDFNAGMTAITGETGAGKSIAIDALGLCLGGR-----AEGDMVR 56

Query: 67  IGS--PSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            G+      + FA  +            +E  ++  ++     D   R   IN   V + 
Sbjct: 57  AGASRADLCARFALKDTPAALRWLEENQLEDGSECLLRRVISSDGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
            + EL + L       +   +       ++R LD
Sbjct: 116 QLRELGQLLIQIHGQHAHQLLLK--PEHQKRLLD 147


>gi|225018817|ref|ZP_03708009.1| hypothetical protein CLOSTMETH_02767 [Clostridium methylpentosum
           DSM 5476]
 gi|224948377|gb|EEG29586.1| hypothetical protein CLOSTMETH_02767 [Clostridium methylpentosum
           DSM 5476]
          Length = 556

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 81/219 (36%), Gaps = 32/219 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + + I+ L +        + + FD    +F G+ G GK+ +++AI+ +  GR      
Sbjct: 1   MLSGLFIQNLAV-----IEKVYIEFDNGMNVFTGETGAGKSIVIDAINAILGGR-----C 50

Query: 61  YADVTRIGSPSFFSTF------------ARVEGME-GLADISIKLETR-DDRSVRCLQIN 106
             ++ R G+                   A   G+E    ++ I+ E   D R+   +   
Sbjct: 51  SKELVRTGADKAVIVGSFRALPLPVRSMAEKNGIELEEDELVIQREISADGRTSARVCGR 110

Query: 107 DVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFER 164
            V + ++ EL    R+  +    D        +    LD    + ++   +R+    ++R
Sbjct: 111 PVTVSMLRELGA--RLINIHGQHDNQILLSPEKHIDILDSFGELGSLRSEYRQTYQSWKR 168

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVE 203
           +       L E   D +  +     +A    +I  A +E
Sbjct: 169 VRSE----LEEMNQDEAHKAQKLDMLAYQINEIEQAELE 203


>gi|126135460|ref|XP_001384254.1| hypothetical protein PICST_44736 [Scheffersomyces stipitis CBS
           6054]
 gi|126091452|gb|ABN66225.1| predicted protein [Scheffersomyces stipitis CBS 6054]
          Length = 153

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           D+   +   S G++ +  + + LA           AP  L DEI A+LD   R A+  ++
Sbjct: 44  DEQQRVEQLSGGQKSLCAIALILA-----IQKCDPAPFYLFDEIDANLDSQYRTAVASMI 98

Query: 339 TDIGS--QIFMTGTDKSVFDSLNETAKFMRI 367
             + S  Q   T       + L    KF  +
Sbjct: 99  KTLSSKAQFICTT---FRPEMLQVADKFYGV 126


>gi|91775128|ref|YP_544884.1| DNA repair protein RecN [Methylobacillus flagellatus KT]
 gi|91709115|gb|ABE49043.1| DNA replication and repair protein RecN [Methylobacillus
          flagellatus KT]
          Length = 552

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++ L+I +F     L L F    T+  G+ G GK+ +++A+S +   RG
Sbjct: 2  LQTLSIRDFVIVDKLELEFSPGFTVLTGETGAGKSILIDALSLVLGARG 50


>gi|83646183|ref|YP_434618.1| siderophore ABC transporter ATPase/permease [Hahella chejuensis KCTC
            2396]
 gi|83634226|gb|ABC30193.1| ABC-type siderophore export system, fused ATPase and permease
            components [Hahella chejuensis KCTC 2396]
          Length = 1047

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 17/121 (14%)

Query: 257  MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
             D+++R   +    +D      D A      STG++K + + + LA           +P+
Sbjct: 931  RDAINRNIAL-LGMADKSTLLDDGAFDNIKLSTGQRKRLSLAMLLA---------DPSPV 980

Query: 317  LLLDEISAHLDEDKRNALFRI----VTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
            ++LDE +A  D   ++  ++     +   G  +F+   D   F    E    + + N Q 
Sbjct: 981  VVLDEWAADQDPRSKSRFYKEWVPMLKAQGRIVFVVTHDDEYFS---EADALITMKNGQL 1037

Query: 373  L 373
            +
Sbjct: 1038 I 1038


>gi|303228656|ref|ZP_07315481.1| hypothetical protein HMPREF9684_1623 [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516636|gb|EFL58553.1| hypothetical protein HMPREF9684_1623 [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 951

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 105/310 (33%), Gaps = 32/310 (10%)

Query: 62  ADVTRIGSPSFFSTFARVE---GMEGLADISIKLETRDDRSV-------RCLQINDVVIR 111
             + R           R+E         ++ ++ +   ++S        R   I++   +
Sbjct: 639 QQMIRWEQKESQRKSYRMEYDNWHRKEKELLLEQKALLEKSGLSGANEYRQKLIDEDQFK 698

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR-- 169
             + + K  ++         + +     +  F  R+           +   ++ +  R  
Sbjct: 699 QWETIYKQSQVQL------DLLTPDGENKDLFYRRLREGNKENWTDELAHADQELNARKD 752

Query: 170 ---NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
              N     G    +  +    Q           R E+ + L S + ++  +    H   
Sbjct: 753 AMANLYEKRGQIVEAMRALGSDQEQREA---IQQRQELESELESALEDWATQVVIAHCME 809

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                 + +       L  +Y K+L +G          + G      +++   + + I H
Sbjct: 810 RAQQSYEEESQPKMLELASQYIKRLTNG-----AYTFDMWGLQDGLALLNERGERLPIYH 864

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQ 344
            S+G    V + + LA A++ S      PI+L D+I    DED++ +   ++ ++G   Q
Sbjct: 865 WSSGLADQVYLALRLALAKVFSYQVDALPIIL-DDILVRFDEDRQKSALELLAELGEHQQ 923

Query: 345 IFMTGTDKSV 354
           I++    + V
Sbjct: 924 IWLFTCQQQV 933



 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          + IK + +  F  Y +           +  G N  GKT++LE +  L  G   +
Sbjct: 1  MNIKQIRLDSFGPYENWTFTSGPNGVQLVYGANESGKTSLLEGMRSLLFGGKHK 54


>gi|118479229|ref|YP_896380.1| ABC transporter ATP-binding protein [Bacillus thuringiensis str.
          Al Hakam]
 gi|229186268|ref|ZP_04313435.1| ABC transporter, ATP-binding protein [Bacillus cereus BGSC 6E1]
 gi|118418454|gb|ABK86873.1| ABC transporter, ATP-binding protein [Bacillus thuringiensis str.
          Al Hakam]
 gi|228597218|gb|EEK54871.1| ABC transporter, ATP-binding protein [Bacillus cereus BGSC 6E1]
          Length = 250

 Score = 43.7 bits (102), Expect = 0.051,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 34 QSLAFHPNVTFIIGENGTGKSTLLEAIAIALGFNAEGGTKNFR 76


>gi|325970081|ref|YP_004246272.1| SMC domain-containing protein [Spirochaeta sp. Buddy]
 gi|324025319|gb|ADY12078.1| SMC domain-containing protein [Spirochaeta sp. Buddy]
          Length = 388

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 6/51 (11%)

Query: 7  IKFLNISEFRNYASLRLVFD------AQHTIFVGDNGVGKTNILEAISFLS 51
          +  L +  F++                  +  VG NG GK+ IL+A  FL+
Sbjct: 2  LTRLYLDNFKSLIDFSFPPKKDIQDIPAFSCLVGLNGSGKSTILQAFDFLA 52


>gi|320095378|ref|ZP_08027058.1| ABC superfamily ATP binding cassette transporter [Actinomyces sp.
           oral taxon 178 str. F0338]
 gi|319977683|gb|EFW09346.1| ABC superfamily ATP binding cassette transporter [Actinomyces sp.
           oral taxon 178 str. F0338]
          Length = 583

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 244 KEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAH 303
           + EY + L      D+ +    +      L +   D++  +A  S G++  + + + L  
Sbjct: 149 EAEYDRVLAAMTARDAWTIDARLDQTLEALGLGGVDRSRALASLSPGQRARLRLALVLVE 208

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD 356
                        L+LDE + HLD + R  L R + D    + MT  D++  +
Sbjct: 209 ---------RPDALVLDEPTNHLDANGREHLARAIDDWQGPVLMTSHDRAFIE 252


>gi|239948178|ref|ZP_04699931.1| DNA repair protein RecN [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922454|gb|EER22478.1| DNA repair protein RecN [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 554

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 78/256 (30%), Gaps = 54/256 (21%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            L++  F     L + F+    +  G+ G GK+ +L+AI F    +     +  ++ + G
Sbjct: 4   SLSVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILFCLGYK-----TSNNIIKRG 58

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
                                               +N       +E+   L  +++ P 
Sbjct: 59  KDYAVVNI-------------------------IFSLN-------EEIKNFLIQNFIEPE 86

Query: 129 MDRIFSGLS--MERRRF------LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
              +   L     R+ F      +++ +      +   +       +  N  L E     
Sbjct: 87  ELLLIKCLQKVEGRKNFFINNQVVNKAIMQQLATYLFELHG-----QNNNISLLEANTQR 141

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               S    + +   +++    +        I E   K+N    ++    F   +  +  
Sbjct: 142 DILDSY-GNLLDFRAELSKCY-QTWQNTRKEIAEITLKQNSIDQEIDYLSFATEELTKLN 199

Query: 241 CALKEEYAKKLFDGRK 256
             + EE  +KL + RK
Sbjct: 200 IQIGEE--EKLANIRK 213


>gi|170756917|ref|YP_001780563.1| hypothetical protein CLD_3629 [Clostridium botulinum B1 str.
          Okra]
 gi|169122129|gb|ACA45965.1| conserved hypothetical protein [Clostridium botulinum B1 str.
          Okra]
          Length = 244

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + F  + T  VG+NG GK+ ILEAI+   
Sbjct: 36 IEFHPKVTYIVGENGTGKSTILEAIAIAC 64


>gi|153869006|ref|ZP_01998713.1| ABC transporter [Beggiatoa sp. PS]
 gi|152074430|gb|EDN71285.1| ABC transporter [Beggiatoa sp. PS]
          Length = 328

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQ------HTIFVGDNGVGKTNILEAI 47
          +KIK + I+ ++   +L + F  +        +  G NG GKT +LE I
Sbjct: 1  MKIKQIKINSYKVLQNLEISFTDRDGNILDTVVIAGVNGSGKTTLLELI 49


>gi|160877519|ref|YP_001556835.1| ATP-dependent OLD family endonuclease [Shewanella baltica OS195]
 gi|160863041|gb|ABX51575.1| ATP-dependent endonuclease of the OLD family [Shewanella baltica
           OS195]
 gi|315269716|gb|ADT96569.1| SMC domain protein [Shewanella baltica OS678]
          Length = 639

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 54/384 (14%), Positives = 119/384 (30%), Gaps = 48/384 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +K+  + +S F+++       +    T  +G NG GKT  L+A+      R F  A    
Sbjct: 1   MKLSCVRLSNFQSFGPTSTELNLENLTFLIGSNGSGKTAALQAL-----CRMF--ALDPS 53

Query: 64  VTRIGSPSFFSTFARVEGMEGL---ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           V RI    F   +  +E  +      +   +    +D +             +D+    +
Sbjct: 54  VRRIKKSDFHVPYDEIEIPDERNLWIEADFQFSELNDEAGNTTVAPHFGHMRLDD-GDGI 112

Query: 121 RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
                         G   E   ++  +     P    ++   ER +   + L        
Sbjct: 113 PRVRFRLEASIGVDGDIEESFVYVHDLDKHGHPLSTAKVRRGERNLIQLHYLPARRDPAE 172

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               +  A +  L       R          I E+ ++ +      +    L      S+
Sbjct: 173 HITFATNAILGRL------LRAVNWEGEREAIKEHTEQISQDLAANTSVNALSNSIKSSW 226

Query: 241 CAL-KEEYAKK---LFDGRKMDSMSRR--TLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +L K E+ K+    F   +++S+ R       P   + +VD+       +  S G++ +
Sbjct: 227 ASLHKGEFFKEPKITFVASEIESLLRHLSISFTPGHDETLVDF-------SRLSDGQKSM 279

Query: 295 VLVGIFLAHARLISNTTGFA-------------PILLLDEISAHLDEDKRNALFRIVTDI 341
           + + + L+   +                      I+ ++E    L       +   + ++
Sbjct: 280 LYLSLVLSSQVIGRAALNGDNSFDPDKLRPPVFTIVAVEEPENSLSPHFLGRIVSALKEM 339

Query: 342 GS----QIFMTGTDKSVFDSLNET 361
            S    Q  +     S+   +   
Sbjct: 340 NSNGDAQALIATHAPSMLRRIEPK 363


>gi|91788456|ref|YP_549408.1| chromosome segregation protein SMC [Polaromonas sp. JS666]
 gi|91697681|gb|ABE44510.1| Chromosome segregation protein SMC [Polaromonas sp. JS666]
          Length = 1182

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++A     V   Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1  MRLNSIKLSGFKSFAEPTNFVLPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGTN 70


>gi|89255800|ref|YP_513162.1| DNA repair protein recN [Francisella tularensis subsp. holarctica
          LVS]
 gi|115314293|ref|YP_763016.1| DNA repair protein RecN [Francisella tularensis subsp. holarctica
          OSU18]
 gi|156501780|ref|YP_001427845.1| DNA repair protein RecN [Francisella tularensis subsp. holarctica
          FTNF002-00]
 gi|167009617|ref|ZP_02274548.1| DNA repair protein RecN [Francisella tularensis subsp. holarctica
          FSC200]
 gi|254367163|ref|ZP_04983194.1| DNA repair protein recN [Francisella tularensis subsp. holarctica
          257]
 gi|290952941|ref|ZP_06557562.1| DNA repair protein RecN [Francisella tularensis subsp. holarctica
          URFT1]
 gi|295313852|ref|ZP_06804422.1| DNA repair protein RecN [Francisella tularensis subsp. holarctica
          URFT1]
 gi|89143631|emb|CAJ78829.1| DNA repair protein recN [Francisella tularensis subsp. holarctica
          LVS]
 gi|115129192|gb|ABI82379.1| DNA repair protein RecN [Francisella tularensis subsp. holarctica
          OSU18]
 gi|134252984|gb|EBA52078.1| DNA repair protein recN [Francisella tularensis subsp. holarctica
          257]
 gi|156252383|gb|ABU60889.1| DNA repair protein RecN [Francisella tularensis subsp. holarctica
          FTNF002-00]
          Length = 549

 Score = 43.7 bits (102), Expect = 0.052,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +  L+I  F    S  + F    T+  G+ G GK+ +L+A+SF+   R
Sbjct: 2  LLHLSIKNFAIIKSTEIDFREGMTVLTGETGAGKSILLDALSFVLGAR 49


>gi|145224091|ref|YP_001134769.1| DNA repair protein RecN [Mycobacterium gilvum PYR-GCK]
 gi|315444428|ref|YP_004077307.1| DNA replication and repair protein RecN [Mycobacterium sp. Spyr1]
 gi|145216577|gb|ABP45981.1| DNA replication and repair protein RecN [Mycobacterium gilvum
           PYR-GCK]
 gi|315262731|gb|ADT99472.1| DNA replication and repair protein RecN [Mycobacterium sp. Spyr1]
          Length = 598

 Score = 43.4 bits (101), Expect = 0.052,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 58/185 (31%), Gaps = 21/185 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----F 56
           M   I+I+ L         +    FD   T+  G+ G GKT ++  +  L   R      
Sbjct: 1   MLAEIRIEALGAIN-----AATAEFDGGLTVLTGETGAGKTMVVTGLHLLGGARADATKV 55

Query: 57  RRASYADVT--RIGSPS-FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
           R  S   V   R  +     +  ARV+G+   +      E  DD SV   +         
Sbjct: 56  RSGSDRAVVEGRFTTTEVGDAVSARVDGILDSS----GAERDDDGSVIAARSVSRDGPSR 111

Query: 114 DELNKHL----RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGR 169
             L         +S     +  +       R    D    A+D R+       +R    R
Sbjct: 112 AYLGGRSVPAKSLSGFTNELLTLHGQNDQLRLMRPDEQRNALD-RYADVTRRLDRYRSAR 170

Query: 170 NRLLT 174
           +  L 
Sbjct: 171 DAWLE 175


>gi|294811387|ref|ZP_06770030.1| Exonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|326439882|ref|ZP_08214616.1| putative exonuclease [Streptomyces clavuligerus ATCC 27064]
 gi|294323986|gb|EFG05629.1| Exonuclease [Streptomyces clavuligerus ATCC 27064]
          Length = 1339

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 78/199 (39%), Gaps = 13/199 (6%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDA----QHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           +++  L ++ F  + A+  + FDA       +  G  G GKT++L+A+ F   G   G R
Sbjct: 1   MRLHRLTVTAFGPFGATQEIDFDALSGAGIFLLHGATGAGKTSVLDAVCFALYGAVPGAR 60

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           ++    +    +P+   T   ++   G   + I+      R  +  +      R   +L 
Sbjct: 61  QSPGTSLRSDHAPAGTPTEVLLDLTVGGRRLEIRRRPAQPRPKKNGR-GVTTERAQSQLR 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR----GRNRLL 173
           ++        ++ R    +  E  + +                DF R +R     R RLL
Sbjct: 120 EYDAEQGAWRALSRSHQEIGEEITQLVGMSREQFCQVVLLPQGDFARFLRSDAEARARLL 179

Query: 174 TEGYFDSSWCSSIEAQMAE 192
               FD+   +++E ++AE
Sbjct: 180 GRL-FDTGRFAAVEERLAE 197


>gi|213423454|ref|ZP_03356436.1| recombination and repair protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 255

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 29/204 (14%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R G
Sbjct: 3   QLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVRTG 57

Query: 69  S--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           +              P+        +  EG   +  ++ + D RS   +    V +  + 
Sbjct: 58  ATRADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSDGRSRGFINGTAVPLSQLR 117

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR-----MVFAIDPRHRRRMIDFERLMRGR 169
           EL + L       +  ++      +++  LD       +      H +      R +   
Sbjct: 118 ELGQLLIQIHGQHTHQQLTK--PEQQKSLLDSYANEAALAQQMAAHYQLWHQSCRDLAHH 175

Query: 170 NRLLTEGYFDSSWCSSIEAQMAEL 193
            +   E    +        Q+ EL
Sbjct: 176 QQQSQERAARAELLQY---QLKEL 196


>gi|123444611|ref|XP_001311074.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121892870|gb|EAX98144.1| hypothetical protein TVAG_332540 [Trichomonas vaginalis G3]
          Length = 755

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 19 ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          ++  +  D + T+  G NG GKT I EAI +   G  
Sbjct: 23 STQTIDLDDKMTLITGPNGSGKTTIFEAIQYALIGVS 59


>gi|111114867|ref|YP_709485.1| P115 protein [Borrelia afzelii PKo]
 gi|110890141|gb|ABH01309.1| P115 protein [Borrelia afzelii PKo]
          Length = 816

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++            +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIVLLGFKSFLNRQEFEVGENLSFIVGPNGCGKSNLIDAVRFCIGEDNLKFLRVED 60

Query: 61 YADVT---RIGSPSFFSTFARVEGMEGLADI 88
           +D+    ++G  +F         ++G    
Sbjct: 61 ISDLISVSKLGKSNFAEITLFFSNIDGEKST 91


>gi|326797829|ref|YP_004315648.1| DNA repair protein RecN [Sphingobacterium sp. 21]
 gi|326548593|gb|ADZ76978.1| DNA repair protein RecN [Sphingobacterium sp. 21]
          Length = 551

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 80/258 (31%), Gaps = 12/258 (4%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +K L I  +     L +       I  G+ G GK+ IL A+S +    +  + F   +  
Sbjct: 2   LKRLLIKNYALIDELDISPAKGLNILTGETGAGKSIILGALSLILGQRAESKYFYNQAQK 61

Query: 63  DVTR---IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
            V              F + E ++   +  ++ E   D   R   +ND  + +       
Sbjct: 62  CVIEGFFQIEEYNLGDFFQEEDLDYEPETILRREISADGKSRAF-VNDTPVTLSTLKALG 120

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
            R+  +      +       +   LD +    ++   ++     + ++ +  + L+ E  
Sbjct: 121 ERLIDIHSQHATLEINTEDFQLMTLDSVGENGSLLKTYQETFRKYRQVTQALHDLMEESK 180

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
              S     +    EL         +   AL     +    E      L+    L  +  
Sbjct: 181 QAQSEADYHQFLYDELAAAKLNGDEQ--EALEQEQNQLSHAEEIKRALLAANFLLSEQEQ 238

Query: 238 QSFCALKEEYAKKLFDGR 255
               +LKE   +     R
Sbjct: 239 PVINSLKEAGLQIQQAER 256


>gi|260578651|ref|ZP_05846559.1| DNA repair protein RecN [Corynebacterium jeikeium ATCC 43734]
 gi|258603148|gb|EEW16417.1| DNA repair protein RecN [Corynebacterium jeikeium ATCC 43734]
          Length = 571

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 81/248 (32%), Gaps = 39/248 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + + I+ L +            F    ++  G+ G GKT ++ ++  LS   G R  +
Sbjct: 1   MLHELHIRNLGV-----IEEATAEFSTGLSVVTGETGAGKTMVVSSLRLLS---GHR--A 50

Query: 61  YADVTRIGSPS------FFSTFARVEGMEGLA-----DISIKLETRDDRSVR-CLQINDV 108
            A   R G+        F +  A V+ +         D  +      + + R    +   
Sbjct: 51  DASRVRNGADKASVEGIFSADSAAVDELVEQVGGYVDDGEVIASRTVNATGRSRAHLAGK 110

Query: 109 VIRV--VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR--H---RRRMID 161
            +    + E   H+          R+     + +   LD      +    +   R   + 
Sbjct: 111 TVAAGVLGEFAGHVITIHGQNDQLRLL--DPVRQLGALDDYAGLGEKVVTYQARRAEWLR 168

Query: 162 FERLMRGRNRLLTEGYFDSSWC-------SSIEAQ-MAELGVKINIARVEMINALSSLIM 213
            ++ +R R     +   +S            I+ Q   ++GVK  I R++  + + + + 
Sbjct: 169 LDKDLRRRMEARRDLALESETLQRAVEAIDEIDPQPGEDVGVKAQIKRLQAADEIRAGLQ 228

Query: 214 EYVQKENF 221
                 + 
Sbjct: 229 RAQAALDG 236


>gi|216263950|ref|ZP_03435944.1| P115 protein [Borrelia afzelii ACA-1]
 gi|215979994|gb|EEC20816.1| P115 protein [Borrelia afzelii ACA-1]
          Length = 816

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++            +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIVLLGFKSFLNRQEFEVGENLSFIVGPNGCGKSNLIDAVRFCIGEDNLKFLRVED 60

Query: 61 YADVT---RIGSPSFFSTFARVEGMEGLADI 88
           +D+    ++G  +F         ++G    
Sbjct: 61 ISDLISVSKLGKSNFAEITLFFSNIDGEKST 91


>gi|149062593|gb|EDM13016.1| SMC5 structural maintenance of chromosomes 5-like 1 (yeast)
           (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 1049

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 87/295 (29%), Gaps = 23/295 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y    +       + +G NG GK++I+ AI     G+         V  
Sbjct: 53  IVRIAMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 112

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVVDELNKHLRISW 124
                       +E      ++ I  E    ++     IN   +  ++V+E    L I  
Sbjct: 113 FVKRGCSKGLVEIELFRTSGNLIITREIDVIKNQSFWFINKKPVTQKIVEEQVAALNIQV 172

Query: 125 -----LVPSM--DRIFSGLSMERRRFLDRMVFAID-PRHRRRMIDFERLMRGRNRLLTEG 176
                 +P            +E     ++ +   +  R+   + +F    +       E 
Sbjct: 173 GNLCQFLPQDKVGEFAKLSKIELLEATEKSIGPPEMHRYHCELKNFREKEKQLETSCKEK 232

Query: 177 YFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTG--FLDG 234
                       +  +  V+    R   ++ L  ++        + +++    G   +  
Sbjct: 233 TEYLDKMIQRNERYKQ-DVERFYERKRHLD-LIEMLEAKRPWVEYENVRQEYEGVKLVRD 290

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGST 289
           +  +    LKE          +++   R          L V   +KA  I   S 
Sbjct: 291 RVKEEVRKLKEGQIPMTRRIEEIERQRRT---------LEVRIKEKATDIKEASQ 336


>gi|114707159|ref|ZP_01440057.1| hypothetical protein FP2506_04611 [Fulvimarina pelagi HTCC2506]
 gi|114537355|gb|EAU40481.1| hypothetical protein FP2506_04611 [Fulvimarina pelagi HTCC2506]
          Length = 1157

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 48/142 (33%), Gaps = 17/142 (11%)

Query: 5   IKIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           ++ K L++  F  +    + F  DA+  I  G N  GK+  L A+S L  G   ++    
Sbjct: 1   MRFKRLHLLRFGAFEDREIAFRPDARLHIVYGPNEAGKSTTLSALSSLLFGFPHQKTHDF 60

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE-----LN 117
               +         A +   +G     +    R       L  +D    + D+     L 
Sbjct: 61  ----LHRADALRIAATIAARDGS---ELAFRRRRGNKATLLADDDTETPLRDDTLASFLG 113

Query: 118 KHLRISW---LVPSMDRIFSGL 136
              R  +        DR+ +G 
Sbjct: 114 GLNRQVFESAFGLDSDRLRAGA 135


>gi|73965298|ref|XP_850922.1| PREDICTED: similar to ATP-binding cassette, sub-family A, member 6
           isoform a isoform 2 [Canis familiaris]
          Length = 1621

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 33/203 (16%)

Query: 202 VEMINALSSLIMEYVQKENFPHI---KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
           ++ +  L+  I E        H    K SL   L+G F  +  ++   Y K L + + ++
Sbjct: 493 MKALKDLTFDIYEGQITAILGHSGAGKSSLLNILNGSFAPTEGSVT-IYNKNLSEMQDLE 551

Query: 259 SMSRRTLIGPH----------RSDLIVDYCDKAITIAHGSTGEQKVVL----------VG 298
            + + T I P           + +L +    K I         Q+++L          + 
Sbjct: 552 EIRKITGICPQFNVQFDMLTVKENLRLFAKIKGIQPHEVEQEVQRILLELNIQNIQDNLA 611

Query: 299 IFLAHAR-----LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD--IGSQIFMTGTD 351
             L   +           G   ILLLDE +A LD   R+ ++  + +   G  I ++   
Sbjct: 612 THLTEGQKRKLTFGIAILGDPQILLLDEPTAGLDPFSRHRVWNFLKEHKAGHVILLSTNL 671

Query: 352 KSVFDSLNETAKFMRISNHQALC 374
               D L +    M  SN +  C
Sbjct: 672 MDEADILADRKVIM--SNGRLKC 692


>gi|297477868|ref|XP_002689686.1| PREDICTED: structural maintenance of chromosomes 5 [Bos taurus]
 gi|296484773|gb|DAA26888.1| structural maintenance of chromosomes 5 [Bos taurus]
          Length = 1104

 Score = 43.4 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 32/102 (31%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y    +       + +G NG GK++I+ AI     G+         V  
Sbjct: 55  IVRIAMENFLTYDVCEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 114

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                       +E      ++ I  E    ++     IN  
Sbjct: 115 FVKRGCSKGMVEIELFRTSGNLVITREIDVAKNQSSWFINKK 156


>gi|158313824|ref|YP_001506332.1| hypothetical protein Franean1_1989 [Frankia sp. EAN1pec]
 gi|158109229|gb|ABW11426.1| conserved hypothetical protein [Frankia sp. EAN1pec]
          Length = 1348

 Score = 43.4 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRA 59
          ++++ L++  +  +   R+ F    T+ VG N  GK+  L+A+S  L   RG RR+
Sbjct: 1  MRVRALSLDRYGAFEDRRIEFGRGLTVVVGANEAGKSTTLDALSDLLWTFRGTRRS 56


>gi|89071231|ref|ZP_01158412.1| ABC transporter, ATP-binding protein [Oceanicola granulosus
           HTCC2516]
 gi|89043244|gb|EAR49473.1| ABC transporter, ATP-binding protein [Oceanicola granulosus
           HTCC2516]
          Length = 614

 Score = 43.4 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 40/205 (19%), Positives = 65/205 (31%), Gaps = 40/205 (19%)

Query: 169 RNRLLTEGYFDSSWCSSIEA-QMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
           R  LL       S  S + A ++A L  KI+       N L        Q E     +  
Sbjct: 335 RIALLGRNGEGKSTLSKLIADKLAPLSGKISRT-----NKLRVGFFAQHQLEELHADETP 389

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           L      + D+S   L+   A                  G              IT A  
Sbjct: 390 LEHVRRLRPDESPARLRARLA----------------GFGLTADQ-------ADITAARL 426

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G++    + + LA             +L+LDE + HLD + R AL   +T     + +
Sbjct: 427 SGGQKAR--LSLLLATIDA-------PHLLILDEPTNHLDIESREALVEALTAYSGAVVL 477

Query: 348 TGTDKSVFDSLNETAKFMRISNHQA 372
              D  +   + +  +   + N + 
Sbjct: 478 VSHDMHLLSMVAD--RLWLVKNGRV 500


>gi|330994350|ref|ZP_08318277.1| hypothetical protein SXCC_04242 [Gluconacetobacter sp. SXCC-1]
 gi|329758545|gb|EGG75062.1| hypothetical protein SXCC_04242 [Gluconacetobacter sp. SXCC-1]
          Length = 396

 Score = 43.4 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           I+   +  FR  A L     +   + VG N  GKT+ LEA++  +
Sbjct: 4  HIETFYVGCFRGLADLTFDGASHFNLIVGGNNSGKTSALEALAVYA 49


>gi|114327084|ref|YP_744241.1| DNA repair protein recN [Granulibacter bethesdensis CGDNIH1]
 gi|114315258|gb|ABI61318.1| DNA repair protein recN [Granulibacter bethesdensis CGDNIH1]
          Length = 565

 Score = 43.4 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F    T+  G+ G GK+ +L+++      R     + A + R
Sbjct: 2   LTALSIRDVVLIERLDLTFSTGLTVLTGETGAGKSILLDSLGLALGAR-----AEAGLLR 56

Query: 67  IGSPSFFSTFAR-------VEGMEGLADISIKLETRDDR-----SVRCLQINDVVIRVVD 114
            G+     T          VE +    ++ I+ E    R           +ND  + +  
Sbjct: 57  AGADQASVTACFAPPPSHPVEALLAEHELEIEDELVVRRILGKDGRSRAFVNDQPVSIAL 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH----RRRMIDFERL---MR 167
                  +  +    +++           LD   F +DP           D+  +   + 
Sbjct: 117 LRRMGALLVEVQGQHEQMGLADPALHGPMLD--AFGVDPSLRIAVATCWADWRVVIERLS 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
                L E   D  W +    +++ L 
Sbjct: 175 QARIALEEAERDRDWLTHAANELSSLA 201


>gi|163941360|ref|YP_001646244.1| SMC domain-containing protein [Bacillus weihenstephanensis KBAB4]
 gi|163863557|gb|ABY44616.1| SMC domain protein [Bacillus weihenstephanensis KBAB4]
          Length = 709

 Score = 43.4 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 6/53 (11%)

Query: 7   IKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I+ + I  F++  ++++ F      +A   + +G+NGVGK++IL+AI+    G
Sbjct: 304 IEKIEIYNFKSIRNMKIDFTLSKSSNAPWLMLLGENGVGKSSILQAIALTLMG 356


>gi|307332318|ref|ZP_07611393.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
          4113]
 gi|306882036|gb|EFN13147.1| conserved hypothetical protein [Streptomyces violaceusniger Tu
          4113]
          Length = 652

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +++  +    +RN   S  +      T  VG N  GKT +L +I 
Sbjct: 17 MQLTRVRSRLYRNIVDSGDVDIAPDVTALVGKNESGKTAMLSSIY 61


>gi|309791810|ref|ZP_07686297.1| hypothetical protein OSCT_2248 [Oscillochloris trichoides DG6]
 gi|308226132|gb|EFO79873.1| hypothetical protein OSCT_2248 [Oscillochloris trichoides DG6]
          Length = 392

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          ++ + +  F+ +  LRL      T+  G N  GK+ ++++++ L
Sbjct: 2  LQQIILRHFKCFEQLRLPLAP-LTLLSGLNASGKSTVIQSLALL 44


>gi|254439073|ref|ZP_05052567.1| ABC transporter, ATP-binding protein [Octadecabacter antarcticus
           307]
 gi|198254519|gb|EDY78833.1| ABC transporter, ATP-binding protein [Octadecabacter antarcticus
           307]
          Length = 505

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 36/202 (17%)

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
            G   ++    +  Q      +I  AR   +  ++  + +  Q +               
Sbjct: 37  NGRGKTTLLDCLAGQFDPTTGEITRARGLRVGHVAQNVPDVAQGQTL------------- 83

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
            +D    AL  E A+  ++  ++D +            L V Y      +   S G Q+ 
Sbjct: 84  -YDWVLAALPAEQAE--YESWRVDVVL---------DGLSVPYDVHHKPLRELSGGWQRT 131

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDK 352
            ++          +       ILLLDE + HLD  +   L   +  +     + +T  D+
Sbjct: 132 AMLA---------TAWVTEPDILLLDEPTNHLDLYRIGLLQDWLAALPRDVPVVITSHDR 182

Query: 353 SVFDSLNETAKFMRISNHQALC 374
           +  D+      F+R+   +   
Sbjct: 183 AFLDATTNRTLFLRVERSRVFQ 204


>gi|189911963|ref|YP_001963518.1| hypothetical protein LBF_2452 [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
 gi|167776639|gb|ABZ94940.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
          strain 'Patoc 1 (Ames)']
          Length = 365

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          I  L+I  F++     +    +  +  G NG+GK++ ++ I  LS     R
Sbjct: 2  ITELSIKNFKSIKEKTIKLS-RLNVLTGLNGMGKSSFIQII--LSLNASSR 49


>gi|167759615|ref|ZP_02431742.1| hypothetical protein CLOSCI_01973 [Clostridium scindens ATCC
          35704]
 gi|167662741|gb|EDS06871.1| hypothetical protein CLOSCI_01973 [Clostridium scindens ATCC
          35704]
          Length = 515

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          ++I+ L I  F  ++   ++ +    I  G+N  GK+ +
Sbjct: 1  MRIRELIIRNFGKFSDKDILLEDGINILYGENESGKSTL 39



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 45/120 (37%), Gaps = 4/120 (3%)

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRS-DLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            LKEE  +K+ +     +  + T +       + +    K I +   S G  + +   + 
Sbjct: 389 QLKEELNRKISEIICRITGGKYTRLLVEEDLHMSLLSEGKRIPMEQASRGTIEQIYFSLR 448

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           +  ++++         ++LD+   + D+++       + +   Q+ +    K     L E
Sbjct: 449 MTASKVLQEEENP---VILDDTFVYYDDERLKHTLAWLAENKKQVLIFTCQKREIQLLEE 505


>gi|152996480|ref|YP_001341315.1| SMC domain-containing protein [Marinomonas sp. MWYL1]
 gi|150837404|gb|ABR71380.1| SMC domain protein [Marinomonas sp. MWYL1]
          Length = 250

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISF 49
          + FD   TIFVG+NG GK+ +LEAI+ 
Sbjct: 38 IEFDKAVTIFVGENGSGKSTLLEAIAV 64


>gi|83748814|ref|ZP_00945827.1| Smc [Ralstonia solanacearum UW551]
 gi|207743252|ref|YP_002259644.1| chromosome segregation protein smc [Ralstonia solanacearum IPO1609]
 gi|83724506|gb|EAP71671.1| Smc [Ralstonia solanacearum UW551]
 gi|206594649|emb|CAQ61576.1| putative chromosome segregation protein smc [Ralstonia solanacearum
           IPO1609]
          Length = 1171

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           +++  + ++ F+++          Q    VG NG GK+NI++A+   L   R    R  S
Sbjct: 1   MRLSSIKLAGFKSFVDPTNFHVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRAAELRGES 60

Query: 61  YADVTRIGS--------PSFFSTFARVEGM-----EGLADISIKLETRDDRSVRCLQIND 107
             DV   GS         S    F   EG         A+I++K     D +     IN+
Sbjct: 61  MQDVIFNGSTQRKPAGRASVELVFDNAEGRAAGQWSQYAEIAVKRVLSRDGTS-SYFINN 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 QAVRRRD 126


>gi|301094310|ref|XP_002896261.1| structural maintenance of chromosomes protein 4, putative
          [Phytophthora infestans T30-4]
 gi|262109656|gb|EEY67708.1| structural maintenance of chromosomes protein 4, putative
          [Phytophthora infestans T30-4]
          Length = 1346

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 9/74 (12%)

Query: 1  MTNRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--F 56
          M  ++      +  F++YA  + +  F    +  VG NG GK+N+++A+ F+   R    
Sbjct: 1  MITKMH-----LENFKSYAGKVEIGPFHKCFSAVVGPNGSGKSNVIDALLFVFGKRASKL 55

Query: 57 RRASYADVTRIGSP 70
          R    +++    + 
Sbjct: 56 RLKKVSELVHRSAN 69


>gi|226948203|ref|YP_002803294.1| transporter [Clostridium botulinum A2 str. Kyoto]
 gi|226841334|gb|ACO84000.1| transporter [Clostridium botulinum A2 str. Kyoto]
          Length = 244

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + F  + T  VG+NG GK+ ILEAI+   
Sbjct: 36 IEFHPKVTYIVGENGTGKSTILEAIAIAC 64


>gi|212691598|ref|ZP_03299726.1| hypothetical protein BACDOR_01093 [Bacteroides dorei DSM 17855]
 gi|212665787|gb|EEB26359.1| hypothetical protein BACDOR_01093 [Bacteroides dorei DSM 17855]
          Length = 345

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          I  + +++F  +A+ R  F     + +G NG GKT++L+ +
Sbjct: 2  INSILLTDFTGFANTRFDFTKGINVLIGKNGTGKTHVLKCL 42


>gi|168702084|ref|ZP_02734361.1| putative ABC transporter ATP-binding protein [Gemmata obscuriglobus
           UQM 2246]
          Length = 556

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 99/299 (33%), Gaps = 81/299 (27%)

Query: 12  ISEFRNY----------ASLRLVFDAQHTI-FVGDNGVGKTNIL------------EA-- 46
           I   RN             + L F     I  +G NG GKT +L            EA  
Sbjct: 6   IYNIRNLTKHYGKREILKDINLNFYPGAKIGVIGSNGSGKTTLLRIMAGVDKEFMGEAWP 65

Query: 47  -----ISF------LSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETR 95
                I +      L+PG+         V      +     A +   E   +I  ++ T 
Sbjct: 66  HQGATIGYVPQEPHLTPGKT--------VIENVEEAVAPIRALLRRQE---EIGDEMGTA 114

Query: 96  DDRSVRCL---------QINDVVIRVVDE-LNKHLRISWLVPSMDRIFSGLSMERRRFLD 145
           D++    L         +I+      +D  L   +    L PS   +      ERRR   
Sbjct: 115 DEKKFEKLSNEMERVQARIDATNAYELDRTLEMAMDAMRLPPSDAAVERLSGGERRR--- 171

Query: 146 RMVFAIDPRHRRRMIDFERLMRGRNRLL----TEGYFDSSWCSSIEAQMAEL-GVKINIA 200
                         +   + +  +N LL       + D+     +E  +A+  G  + + 
Sbjct: 172 --------------VALCKTLLQQNDLLILDEPTNHLDAESVEWLEHHLAQFPGAVVAVT 217

Query: 201 RVE-MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
                ++ ++  I+E      +P    + +G+++ K  +     K+E AKK    R+++
Sbjct: 218 HDRYFLDNVAKWILELHAGRGYP-FSGNYSGWMEMKQKRMAVEEKQESAKKKQLERELE 275


>gi|149246692|ref|XP_001527771.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
          YB-4239]
 gi|146447725|gb|EDK42113.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
          YB-4239]
          Length = 1282

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 6  KIKFLNISEFRNYASLRLVF--DAQHTIFVGDNGVGKTNILEAISF 49
          ++  L +  F++Y    ++    +  T  +G NG GK+N+++AISF
Sbjct: 3  RLIGLELENFKSYKGRTVIGLGSSNFTSIIGPNGSGKSNLMDAISF 48


>gi|146328663|ref|YP_001209950.1| DNA repair protein RecN [Dichelobacter nodosus VCS1703A]
 gi|146232133|gb|ABQ13111.1| DNA repair protein RecN [Dichelobacter nodosus VCS1703A]
          Length = 552

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 86/274 (31%), Gaps = 37/274 (13%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M NR+ I+   + ++       + F A   +  G+ G GK+ +++AI+ L   R     +
Sbjct: 1   MLNRLCIQQFALIDY-----SEIAFGAGFNVISGETGAGKSILIDAIALLLGER-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV--RCLQINDVVIRVVDELNK 118
            A + R  + +     A+ + +   A I +  E +    V  R ++     I + ++ + 
Sbjct: 51  QAAMIRPHADTA-EICAQFDALPEAAQILLTAEQQTPSCVIRRSIREKSGKIWINEQKST 109

Query: 119 HLRISWLVPSMDRI--------FSGLSMERRRFLD--------------RMVFAIDPRHR 156
              +    P++  I              +R R  D                 +    +  
Sbjct: 110 AQFLKTFAPALVTIHGQHKNQALLKADEQRARLDDFGQLTPEKNAVRAAWQHWQTQQKRY 169

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
           +     +     R   L          +  E +  +L  +    R+   + L S   +  
Sbjct: 170 QEAQAQQSDFMQRQEWLRYQLAQFDELAVQENEFMQLSQE--HHRLSYADELLSKGAQLS 227

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
           Q        +  +    G+          ++ + 
Sbjct: 228 QMLYEDAASVDFSLHRSGQMMVQLAEKCSDFQEA 261


>gi|119774248|ref|YP_926988.1| ATP-dependent OLD family endonuclease [Shewanella amazonensis
          SB2B]
 gi|119766748|gb|ABL99318.1| ATP-dependent endonuclease of the OLD family [Shewanella
          amazonensis SB2B]
          Length = 603

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +++  + IS FR+   +       +T  +G N  GK+ +L AI
Sbjct: 3  MELSKIKISNFRSIDRIEFTL-RNYTSLIGPNNAGKSTVLSAI 44


>gi|329922944|ref|ZP_08278460.1| hypothetical protein HMPREF9412_5024 [Paenibacillus sp. HGF5]
 gi|328941717|gb|EGG38002.1| hypothetical protein HMPREF9412_5024 [Paenibacillus sp. HGF5]
          Length = 633

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 14/114 (12%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP------GRGFRR 58
           +++  L I  FR +    ++F    T  +G+N VGK+++L A++ L           F  
Sbjct: 1   MQLYKLEIEGFRRHTDTNVLFSDA-TFLIGENNVGKSSVLAALNILLNDVKRVSDEEFFS 59

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
               ++TR GS        ++       D+  + +       R L+ N    + 
Sbjct: 60  YMDGELTRRGSD-------KIVLTAEFRDVPEEAKQWIGFKGRVLRYNKDDGKT 106


>gi|323137881|ref|ZP_08072956.1| DNA repair protein RecN [Methylocystis sp. ATCC 49242]
 gi|322396884|gb|EFX99410.1| DNA repair protein RecN [Methylocystis sp. ATCC 49242]
          Length = 563

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 59/208 (28%), Gaps = 28/208 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F    T   G+ G GK+ +L+A      GRG      A + R
Sbjct: 2   LVRLSIRDIVLIDELDLEFGQGLTTLTGETGAGKSILLDAFMLALGGRG-----DASLVR 56

Query: 67  IGSPSFFS-------------TFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRV 112
            G                     AR  G+    ++ ++     D   R    +     + 
Sbjct: 57  AGQEQGQVAAVFDLPADHPAHLAAREFGLTSDDELVLRRLQMADGRTRAFVNDQPATAQA 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA------IDPRHRRRMIDFERLM 166
           +  + + L           +        R  +D           +  R+        R +
Sbjct: 117 LRAIGRELVEIHCQHDDRALV--DPAAHRALVDAHGGLQTQANEVRARY-GAWQAARRAL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELG 194
                 +     D+ +      ++ +L 
Sbjct: 174 AEEEARIARARADADYLRHAHEELTKLA 201


>gi|296193757|ref|XP_002744663.1| PREDICTED: DNA repair protein RAD50-like [Callithrix jacchus]
          Length = 511

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|251790916|ref|YP_003005637.1| AAA ATPase [Dickeya zeae Ech1591]
 gi|247539537|gb|ACT08158.1| AAA ATPase [Dickeya zeae Ech1591]
          Length = 249

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISF 49
          +    + T F+G+NG GK+ +LEAI+ 
Sbjct: 36 IDPHPKVTFFIGENGSGKSTLLEAIAV 62


>gi|166365355|ref|YP_001657628.1| hypothetical protein MAE_26140 [Microcystis aeruginosa NIES-843]
 gi|166087728|dbj|BAG02436.1| hypothetical protein MAE_26140 [Microcystis aeruginosa NIES-843]
          Length = 394

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 12/113 (10%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL--SPGRGFR----- 57
           +KI  + I  +R + ++ +       + +G NG GK+ + +   FL  +     R     
Sbjct: 1   MKIVSIKIKNYRMFKNIHIRDIPPFCVIIGANGTGKSTLFDIFGFLRDALKNNIRQALQI 60

Query: 58  RASYADVTRIGSPSFFSTFA-----RVEGMEGLADISIKLETRDDRSVRCLQI 105
           R  Y ++   G              ++   E L    I +   ++R V   +I
Sbjct: 61  RGGYREIITRGQEQEDIEIELQFPMKILDTERLVTYQIIIGQNNNRPVIKREI 113


>gi|159030117|emb|CAO91009.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 474

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I ++ I  F+++ +  +VF    T+  G N  GK+N+ +A+  L+  
Sbjct: 2  ITYIKIHGFKSFHNFEMVFTP-LTVVAGVNASGKSNLFDALQLLTRL 47


>gi|153940632|ref|YP_001390281.1| hypothetical protein CLI_1015 [Clostridium botulinum F str.
          Langeland]
 gi|152936528|gb|ABS42026.1| conserved hypothetical protein [Clostridium botulinum F str.
          Langeland]
 gi|295318374|gb|ADF98751.1| conserved hypothetical protein [Clostridium botulinum F str.
          230613]
          Length = 246

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + F  + T  VG+NG GK+ ILEAI+   
Sbjct: 36 IEFHPKVTYIVGENGTGKSTILEAIAIAC 64


>gi|17232403|ref|NP_488951.1| hypothetical protein alr4911 [Nostoc sp. PCC 7120]
 gi|17134049|dbj|BAB76610.1| alr4911 [Nostoc sp. PCC 7120]
          Length = 690

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQ----HTIFVGDNGVGKTNILEA 46
          +K+  + +  FR++   +  +V         TI  G+NG GKT++L A
Sbjct: 1  MKLTSIKLCNFRSFYGRTPEIVIAGGDVLNTTIIHGNNGSGKTSLLNA 48


>gi|299146571|ref|ZP_07039639.1| DNA repair protein RecN [Bacteroides sp. 3_1_23]
 gi|298517062|gb|EFI40943.1| DNA repair protein RecN [Bacteroides sp. 3_1_23]
          Length = 553

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 64/201 (31%), Gaps = 17/201 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  R  +  
Sbjct: 2   LRSLYIQNYALIEKLDISFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRHGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            +   R   S      F     +E   +  ++ E +     R   IND       V EL 
Sbjct: 62  CIIEARFDISAYGMRPFFEENELEYDEECILRREVQSSGKSRAF-INDTPASLAQVKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMV---FAIDPRHR--RRMIDFERLMRGRNRL 172
           + L           +       +   LD +     A+   H         +R +     L
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLDILAHNDAALAKYHLCYDEWKQTDRELAELVSL 178

Query: 173 LTEGYFDSSWCSSIEAQMAEL 193
             +   D  +      Q+ E 
Sbjct: 179 AEKSRSDEDYIRFQLEQLEEA 199


>gi|34419309|ref|NP_899322.1| recombination endonuclease subunit [Vibrio phage KVP40]
 gi|34332990|gb|AAQ64145.1| recombination endonuclease subunit [Vibrio phage KVP40]
          Length = 745

 Score = 43.4 bits (101), Expect = 0.056,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 82/262 (31%), Gaps = 59/262 (22%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS 89
           T+  G NG GK+  +EAI F   G+ FR      +              V   + L +I+
Sbjct: 30  TLITGTNGAGKSTYIEAICFALYGKPFRNIKKTQIVNA-----------VNKKKLLVEIT 78

Query: 90  IKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS-------------------------- 123
            +      + VR ++ N   I   DEL                                 
Sbjct: 79  FQDNKHVYKIVRGIKPNKFEIYKDDELIPQEAAVADYQDMLEKNILKMNLSTFKQIAVLG 138

Query: 124 --WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERL-MRGRNRLLTEGYFDS 180
                P M       + +RR  ++ ++   D      M    ++ ++  N  + +   D 
Sbjct: 139 TAGYTPFMLL----PAAKRREIVEDLL---DIGIFSDMAALNKVALKQLNEQIKDTEAD- 190

Query: 181 SWCSSIEAQMAELGVKINIA------RVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
                IE +M EL + I         R   +  L +   E   +      ++S       
Sbjct: 191 -----IERRMGELKLHIQFQKEQQDNRDGDLAQLEARKSEAEAELAPLSFEISQLESQIS 245

Query: 235 KFDQSFCALKEEYAKKLFDGRK 256
           +  +    LKE+ A +L    +
Sbjct: 246 EDSKKLRDLKEKLAFELSAAEE 267


>gi|307106393|gb|EFN54639.1| hypothetical protein CHLNCDRAFT_52951 [Chlorella variabilis]
          Length = 1256

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 3  NRIKIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +R +I  L ++ F++Y     +    + T  +G NG GK+N+++A+SF
Sbjct: 5  HRGRILRLEVNSFKSYRGRNTIGPFRKFTTIIGPNGSGKSNVMDAVSF 52


>gi|167851698|ref|ZP_02477206.1| hypothetical protein BpseB_41081 [Burkholderia pseudomallei B7210]
          Length = 712

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QI 345
           S GE + + +  F+A   L+         ++ D+  + LD  +R  + + +       Q+
Sbjct: 461 SEGELRALALATFMAEVSLVP----GHGAVIFDDPMSSLDHARRERVAKRLVSEAGKRQV 516

Query: 346 FMTGTDKSVFDSLNETAKFMRISNHQALCI 375
            +   D +  + L + A    + +  A+ +
Sbjct: 517 IVFTHDLAFANHLADEAARQSV-DATAMSV 545


>gi|126434636|ref|YP_001070327.1| ABC transporter related [Mycobacterium sp. JLS]
 gi|126234436|gb|ABN97836.1| ABC transporter related protein [Mycobacterium sp. JLS]
          Length = 251

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 19/119 (15%)

Query: 257 MDSMSRRTLIGPHRSDLIVDY----------CDKAITIAHGSTGEQKVVLVGIFLAHARL 306
            D        G    +L               +   +  H S G+++   +   LA    
Sbjct: 104 QDVAFGPANFGVRGDELAARVRRALATVSLTAEADRSPTHLSAGQRRRAALATVLA---- 159

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
                    IL+LDE SA+LD   R  L   +  I + + +   D      L E A  +
Sbjct: 160 -----CEPEILVLDEPSANLDPVARRELAETLRAIRATMVIVTHDLPYAAQLCERAVIV 213


>gi|13357697|ref|NP_077971.1| p115 protein [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|170762065|ref|YP_001752223.1| p115 protein [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171920182|ref|ZP_02931569.1| p115 protein [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|183508750|ref|ZP_02958224.1| p115 protein [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186702010|ref|ZP_02971627.1| p115 protein [Ureaplasma parvum serovar 6 str. ATCC 27818]
 gi|11356999|pir||C82930 p115 protein UU140 [imported] - Ureaplasma urealyticum
 gi|6899099|gb|AAF30546.1|AE002114_13 p115 protein [Ureaplasma parvum serovar 3 str. ATCC 700970]
 gi|168827642|gb|ACA32904.1| p115 protein [Ureaplasma parvum serovar 3 str. ATCC 27815]
 gi|171902559|gb|EDT48848.1| p115 protein [Ureaplasma parvum serovar 1 str. ATCC 27813]
 gi|182675683|gb|EDT87588.1| p115 protein [Ureaplasma parvum serovar 14 str. ATCC 33697]
 gi|186700790|gb|EDU19072.1| p115 protein [Ureaplasma parvum serovar 6 str. ATCC 27818]
          Length = 981

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 84/267 (31%), Gaps = 43/267 (16%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K +    F+++   + + F    T  +G NG GK+NI++A+ ++      +  R     
Sbjct: 4   LKKIEAHGFKSFGEPVVIEFKHPMTGIIGANGTGKSNIIDALKWVIGDQSLKSMRAHK-N 62

Query: 63  DVTRIGSPSFFSTF-ARVEGME---------GLADISIKLETRDDRSVRCLQINDVVIRV 112
           D+   G         ARV                +I I        +     IND  + +
Sbjct: 63  DLLFSGGRYAPKAHIARVNLYFNNVNNVLYTQHKEIKISRVLNIKTNENTYYINDE-VAL 121

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S             ERR+  +             +  + 
Sbjct: 122 LKDITDMFLDSGLSKGSLGIISQGAVSWFAEAKPNERRKMFEE---------ASGIGRYS 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
           +  +     L+    + +  + I A +           +  +   +    EY Q K+   
Sbjct: 173 KRKQEALNSLSRANENLARLNDIVANL--------KKELAKLQKQAMRFNEYKQIKDELT 224

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAK 249
            + L +       + +    ++E   +
Sbjct: 225 KLDLVIIVRDIIHWQKQLNDIQENLKE 251


>gi|71030088|ref|XP_764686.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68351642|gb|EAN32403.1| hypothetical protein TP02_0117 [Theileria parva]
          Length = 1398

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 10/67 (14%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA----- 59
           I  + ++ F++Y  +     F  + T  VG NG GK+N+++A+ F+    GFR       
Sbjct: 43  IHKVVLNNFKSYGGVTTIGPFHKRFTSIVGPNGSGKSNVIDAMLFVF---GFRAKQIRFD 99

Query: 60  SYADVTR 66
             +++  
Sbjct: 100 KLSELIH 106


>gi|186684598|ref|YP_001867794.1| hypothetical protein Npun_F4484 [Nostoc punctiforme PCC 73102]
 gi|186467050|gb|ACC82851.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
          Length = 690

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 5   IKIKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           +K+  + +  FR++                 TI  G+NG GKT++L A +++   +    
Sbjct: 1   MKLTSIKLCNFRSFYGTTPEMIIAGGDAQNTTIIHGNNGSGKTSLLNAFTWVLYDK--FS 58

Query: 59  ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQ 104
           A++A + ++ +    +   + + +E   +I  + E +  R  R  +
Sbjct: 59  AAFASIEQLVNKRAIAETQKGQAVECWVEIGWEHEGKRYRVKRACR 104


>gi|308161371|gb|EFO63822.1| RAD50 DNA repair protein, putative [Giardia lamblia P15]
          Length = 1382

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 7  IKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKT 41
          +  L +   R+Y      + F    TI  G NG GK+
Sbjct: 4  LDQLTLKNVRSYRDEPSTIAFSPNLTIITGHNGAGKS 40


>gi|302541973|ref|ZP_07294315.1| putative BldA-regulated nucleotide binding protein [Streptomyces
          hygroscopicus ATCC 53653]
 gi|302459591|gb|EFL22684.1| putative BldA-regulated nucleotide binding protein [Streptomyces
          himastatinicus ATCC 53653]
          Length = 405

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEA 46
          R  +  L +S F+++           T+F G +G GK+ +LEA
Sbjct: 28 RPAVTELRLSAFKSHRRAAFSLGP-LTLFAGPSGSGKSGVLEA 69


>gi|260550509|ref|ZP_05824719.1| recombination and DNA repair protein [Acinetobacter sp. RUH2624]
 gi|260406424|gb|EEW99906.1| recombination and DNA repair protein [Acinetobacter sp. RUH2624]
          Length = 555

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 55/195 (28%), Gaps = 35/195 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F     L +  +    +  G+ G GK+ +L+A   LS   G R     +  R
Sbjct: 2   LTHLTLINFALADHLAIDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT--DTNYVR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQINDVV- 109
            GS     T                   ++   G   +   +            +N    
Sbjct: 57  YGSDKADVTAVFTYQNNSPEAKWLQDHELDDDSGEIHLRRVIFATGRSK---AWVNGRPS 113

Query: 110 -IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR- 167
            +  + EL + L   +   S  ++        + +LDR              D       
Sbjct: 114 SLSELKELGRLLVQLYSQHSQQQLLE--PPYPKHWLDR-----YNNFYAEANDVREAYST 166

Query: 168 -GRNRLLTEGYFDSS 181
             R   L +   D+ 
Sbjct: 167 WQRTIRLHQAALDAQ 181


>gi|257095176|ref|YP_003168817.1| chromosome segregation protein SMC [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
 gi|257047700|gb|ACV36888.1| chromosome segregation protein SMC [Candidatus Accumulibacter
          phosphatis clade IIA str. UW-1]
          Length = 1171

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  L ++ F+++     +    Q    VG NG GK+N+++A+ ++   S     R  S
Sbjct: 1  MRLTKLKLAGFKSFVDPTTIALPGQLVGVVGPNGCGKSNVMDAVRWVLGESKASELRGES 60

Query: 61 YADVTRIGSPS 71
            DV   GS S
Sbjct: 61 MQDVIFNGSGS 71


>gi|192358991|ref|YP_001983805.1| DNA repair protein RecN [Cellvibrio japonicus Ueda107]
 gi|190685156|gb|ACE82834.1| DNA repair protein RecN [Cellvibrio japonicus Ueda107]
          Length = 555

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 47/159 (29%), Gaps = 16/159 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           +  L I  F     L L      T+  G+ G GK+ +L+A+      R      R  +  
Sbjct: 2   LTHLTIHNFTLVDHLELELKPGMTVITGETGAGKSILLDALGQTLGDRAEAERVRTGASK 61

Query: 63  -------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVV 113
                  D+ +I     +     +   E   +  ++     D   +   IN      + +
Sbjct: 62  ADISASFDIRQIPPAREWLASHDLLQEENPQECLLRRVIGADGKSKAY-INGQPATLQQL 120

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152
             L + L           +        RR +D      +
Sbjct: 121 RTLGEILIDIHSQHEHQSLLVKD--THRRLVDEFAGQTE 157


>gi|159030487|emb|CAO91391.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 394

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 59/387 (15%), Positives = 116/387 (29%), Gaps = 56/387 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           +KI  + I  +R + ++ +       + +G NG GK+ + +   FL      +      +
Sbjct: 1   MKIVSIKIKNYRMFKNIHIRNIPPFCVIIGANGTGKSTLFDIFGFLRDA--LKNNIRQAL 58

Query: 65  -TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             R G     +     E +E      +K+   +      L I     R            
Sbjct: 59  QIRGGYREIITRGQEQENIEIELQFRMKILDTERLVTYILIIGQNNNRP----------- 107

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR-RRMIDFERLMRGRNRLLTEGYFDSSW 182
            +   + R   G   +   FLD   F +   +      DF +  +     L         
Sbjct: 108 VIKREILRYKRGEHGKPFHFLD---FQLGQGYAITNEEDFSKPDKE----LDREEQQLES 160

Query: 183 CSSIEAQMAELGVKINIARVEMINALSS--LIMEYVQKENFPHIKLSLTGFLDGKFDQ-- 238
              +  +   LG            +L     + ++   E     ++S    L    D   
Sbjct: 161 NDILAIKG--LGQFQRFKAATAFRSLIENWHVSDFHISEARGSKEISYAEHLSTTGDNIA 218

Query: 239 -----SFCALKEEYAKKLFDGRKM-----DSMSRRTLIGPHRSDLIVDYCDKAIT----I 284
                 +    E + + L   ++         ++ T  G     LI+ + D+A       
Sbjct: 219 TVAQYIYQQYPEIFQQILEKMKQRVPGISSVEAKETEDG----RLILRFQDQAFKDPFID 274

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV---TDI 341
            + S G  K+    I L             P+L ++E    L       L       +D 
Sbjct: 275 RYVSDGTMKMFAYLILL-------FDPNPHPLLCVEEPENQLYPTLLKELAEEFAHYSDQ 327

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRIS 368
           G Q+F++       +++   + F  I 
Sbjct: 328 GGQVFVSSHSPDFINAVPLASIFWLIK 354


>gi|109290030|ref|YP_656279.1| gp46 recombination protein subunit [Aeromonas phage 25]
 gi|104345703|gb|ABF72603.1| gp46 recombination protein subunit [Aeromonas phage 25]
          Length = 570

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%)

Query: 30  TIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADIS 89
           T+  G NG GK+ +LEAI F   G+ FR  +   +    +         +E  E +  I+
Sbjct: 37  TLCTGKNGAGKSTMLEAIYFALFGKPFRDITKNQLLNENTGKNLLVELWLEYEEKIYHIT 96

Query: 90  IKLETRD 96
             ++   
Sbjct: 97  RGIKPNK 103


>gi|134118852|ref|XP_771929.1| hypothetical protein CNBN1090 [Cryptococcus neoformans var.
          neoformans B-3501A]
 gi|50254533|gb|EAL17282.1| hypothetical protein CNBN1090 [Cryptococcus neoformans var.
          neoformans B-3501A]
          Length = 1329

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYAS---LRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  L I   R++       + F +  T+ VG NG GKT I+E + + + G
Sbjct: 4  LNKLAIRGIRSFDDKHVQVIEFYSPLTVIVGHNGSGKTTIIECLKYATTG 53



 Score = 36.4 bits (83), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 11/85 (12%)

Query: 284  IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-- 341
                S G++ +  + I LA A       G   +L LDE + +LD++  NAL   + +I  
Sbjct: 1220 RGRCSAGQKVLASIIIRLALAESFGQGCG---VLALDEPTTNLDQENINALAESLAEIIR 1276

Query: 342  ------GSQIFMTGTDKSVFDSLNE 360
                    Q+ +   D+     L E
Sbjct: 1277 ERRQQANFQLIVITHDEGFLQRLAE 1301


>gi|47565903|ref|ZP_00236942.1| ABC transporter, ATP-binding protein [Bacillus cereus G9241]
 gi|47557183|gb|EAL15512.1| ABC transporter, ATP-binding protein [Bacillus cereus G9241]
          Length = 250

 Score = 43.4 bits (101), Expect = 0.057,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 34 QSLAFHPNVTFIIGENGTGKSTLLEAIAIALGFNAEGGTKNFR 76


>gi|222099107|ref|YP_002533675.1| hypothetical protein CTN_0133 [Thermotoga neapolitana DSM 4359]
 gi|221571497|gb|ACM22309.1| Putative uncharacterized protein [Thermotoga neapolitana DSM
          4359]
          Length = 758

 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 19/49 (38%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +KI+ + I  F  +    L       I  G N  GKT +   I +   G
Sbjct: 1  MKIRQVYIEGFGKFEDFSLNLKDGLNIVFGGNAAGKTTLANFIRYCLTG 49


>gi|332827403|gb|EGK00155.1| hypothetical protein HMPREF9455_03487 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 571

 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 6   KIKFLNISEF---RNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
           K+  + I  +   R      + F +Q     G+NG GKT+IL AI
Sbjct: 185 KLNSVKIENYGPIRKIEIQDIPFSSQWIFLTGENGTGKTSILRAI 229


>gi|319411488|emb|CBQ73532.1| related to SMC4-Stable Maintenance of Chromosomes [Sporisorium
           reilianum]
          Length = 1644

 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 4   RIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
           R+ I  + +++F++YA    +  F    +  VG NG GK+N+++++ F+   R    R+ 
Sbjct: 263 RLVIHKMVLNDFKSYAGRQEIGPFHKSFSSVVGPNGSGKSNVIDSLLFVFGWRATKMRQG 322

Query: 60  SYADVTR 66
             +++  
Sbjct: 323 KLSELIH 329


>gi|317056620|ref|YP_004105087.1| DNA repair protein RecN [Ruminococcus albus 7]
 gi|315448889|gb|ADU22453.1| DNA repair protein RecN [Ruminococcus albus 7]
          Length = 555

 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 9/113 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I          + F+     F G+ G GK+ ++  I+ +   R        D+ R
Sbjct: 2   LRELYIENLAVIEKASIEFNGSFNAFTGETGAGKSILINGINAILGQR-----VTKDIVR 56

Query: 67  IGSPSFF--STFARVEG--MEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            G+        F  + G  +E L ++ I+ E       R ++ +   +  +D+
Sbjct: 57  TGADKAVISGLFTDIHGTVLEQLKNMGIECEEGQILLTREIRSDGGSVARIDQ 109


>gi|225555768|gb|EEH04059.1| condensin subunit [Ajellomyces capsulatus G186AR]
          Length = 1192

 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 23/154 (14%)

Query: 5   IKIKFLNISEFRNYASLR-------LVFDAQHTIFVGDNGVGKTNILEAISF---LSPGR 54
           ++I  + I  F++YA          L  D       G NG GK+NIL++I F   ++   
Sbjct: 1   MRIVEVIIDGFKSYAVRTVISGWWVLRLDESFNSITGLNGSGKSNILDSICFVLGITNMS 60

Query: 55  GFRRASYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRC 102
             R  +  D+  + G          +            G E  A IS+  +     + + 
Sbjct: 61  TVRAQNLQDLIYKRGQAGVTKASVTIVFDNRDKSKSPIGFEEYASISVTRQIVLGGTSKY 120

Query: 103 LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL 136
           L IN    +     N    +   + + + +    
Sbjct: 121 L-INGHRAQQQTVQNLFQSVQLNINNPNFLIMQG 153


>gi|188582379|ref|YP_001925824.1| DNA repair protein RecN [Methylobacterium populi BJ001]
 gi|179345877|gb|ACB81289.1| DNA repair protein RecN [Methylobacterium populi BJ001]
          Length = 565

 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M  ++ I+ + + +      L L F    T+  G+ G GK+ +L+A +    GRG     
Sbjct: 1  MLVQLAIRDIVLID-----KLELTFSGGLTVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61 YADVTRIGSPSFFSTFA 77
             + R G      T  
Sbjct: 51 DGGLVRQGEAQGGVTAV 67


>gi|117164906|emb|CAJ88457.1| putative branched-chain amino acid transport ATP-binding protein
           [Streptomyces ambofaciens ATCC 23877]
          Length = 260

 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 41/123 (33%), Gaps = 25/123 (20%)

Query: 5   IKIKFLNISEFRNY---ASLRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           + ++ L+++  R      S+ L          +G NG GKT +L A+S     R  R A 
Sbjct: 12  LHVESLDVTYGRALSALRSVSLTVPHGGVVALLGANGAGKTTLLRAVS--GTLRLHRGAI 69

Query: 61  YADVTRIGS-------------------PSFFSTFARVEGMEGLADISIKLETRDDRSVR 101
            A   R G                    P     FA +   E L    + L  R    VR
Sbjct: 70  TAGRVRYGDTALDGRDPVAAVRAGVVQVPEGRRVFAGLTVDENLRAGGLGLNRRAPAQVR 129

Query: 102 CLQ 104
             +
Sbjct: 130 EAR 132


>gi|89900983|ref|YP_523454.1| chromosome segregation protein SMC [Rhodoferax ferrireducens
          T118]
 gi|89345720|gb|ABD69923.1| Chromosome segregation protein SMC [Rhodoferax ferrireducens
          T118]
          Length = 1171

 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++A     +   Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1  MRLNSIKLSGFKSFAEPTNFMLPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES 60

Query: 61 YADVTRIGSP 70
            DV   G+ 
Sbjct: 61 MQDVIFNGTN 70


>gi|148224447|ref|NP_001088209.1| hypothetical protein LOC495035 [Xenopus laevis]
 gi|54035274|gb|AAH84129.1| LOC495035 protein [Xenopus laevis]
          Length = 711

 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 44/314 (14%), Positives = 90/314 (28%), Gaps = 26/314 (8%)

Query: 21  LRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARV 79
             L   A      VG NG+GKT +L+    +  GR  R  S+  +  +           +
Sbjct: 198 AELHLAAGRRYGLVGRNGLGKTTLLK----MLAGRSLRVPSHISILHVEQEVAGDDTPAL 253

Query: 80  EGM---EGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL--VPSMDRIFS 134
           + +   + L +  ++ E   +  +   + +      + E+   L        P+   +  
Sbjct: 254 QSVLECDTLRESLLQEEKELNAKIGAGRGDGSESSRLSEIYSKLEEIEADKAPARASVIL 313

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
                   F   M   +               R R  L    +        ++     L 
Sbjct: 314 AGLG----FKHTMQQQLTKEFSGGW-------RMRLALARALFGRPDLL-LLDEPTNMLD 361

Query: 195 VKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG 254
           V+  +     +    S I+      NF +   +    L  +  +++    E + K   + 
Sbjct: 362 VRAILWLESYLQTWPSTILVVSHDRNFLNAVATDIMHLHSQRLEAYRGNFESFLKT-KEE 420

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
           R  +          +R  + V            S  + K+ L+   L   + I   T   
Sbjct: 421 RLKNQQREYEAQHQYREHIQVFIDRFRYNANRASQVQSKLKLLE-KLPEIKPIEKDT--E 477

Query: 315 PILLLDEISAHLDE 328
            IL   +       
Sbjct: 478 VILRFPDGFEKFSP 491


>gi|83595078|ref|YP_428830.1| hypothetical protein Rru_A3749 [Rhodospirillum rubrum ATCC 11170]
 gi|83577992|gb|ABC24543.1| conserved hypothetical protein [Rhodospirillum rubrum ATCC 11170]
          Length = 394

 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 5  IKIKFLNISEFRNYASL--RLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + IK + ++   ++      +       + +G NG GK+N++ AI   
Sbjct: 1  MLIKSIKLTNILSFGEAAETIELRP-LNVVIGPNGSGKSNLIAAIELF 47


>gi|325478751|gb|EGC81862.1| RecF/RecN/SMC N-terminal domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 1144

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 48/147 (32%), Gaps = 20/147 (13%)

Query: 32  FVGDNGVGKTNILEAI-SFLS--PGRGFRRASYADVTRIGSP-----SFFSTFARVEGME 83
            VG NG GK+NI +AI   L     +  R     DV   G       +           +
Sbjct: 1   MVGPNGSGKSNISDAIRWVLGEQSAKSLRGNKMDDVIFQGGENSKSLNLAEVNLNFSNED 60

Query: 84  GLADI---SIKLETRDDR-SVRCLQINDVVIRVVDE--------LNKHLRISWLVPSMDR 131
              D+    +K+  R  R      +IN   +R+ D         + K          +++
Sbjct: 61  KALDLAYDKVKISRRIYRDGENEYRINGKKVRLKDVRELFLDTGVGKEGYSIISQGRIEQ 120

Query: 132 IFSGLSMERRRFLDRMVFAIDPRHRRR 158
           I S    +RR   +        + RR 
Sbjct: 121 IISSSPKDRRSIFEEASGISKHKFRRD 147


>gi|291519203|emb|CBK74424.1| DNA replication and repair protein RecN [Butyrivibrio fibrisolvens
           16/4]
          Length = 559

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 29/185 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L + +        ++F     I  G+ G GK+ IL A+            +
Sbjct: 1   MLASLHVKNLALID-----EEEIIFSKGLNILSGETGAGKSIILGALHH-----SLGDKA 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADI-----------SIKLETRDDRSVRCLQINDV- 108
             D+ R      F     +   E   +             + +  +   S    +IN   
Sbjct: 51  SKDILRNSESEAFVEAVYLVDDEKTKEALRDLGVEPYDDEVIMSRKITESRSVGKINGEQ 110

Query: 109 -VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFE 163
                + E+   L   +       + +  + +   FLD      +  +  +      +++
Sbjct: 111 VPAAKMKEVGDILLDIYGQKEHQSLLN--THKHMEFLDEFAKNQIGDLKLQVADSYKEYK 168

Query: 164 RLMRG 168
           +L+  
Sbjct: 169 KLLSE 173


>gi|282852319|ref|ZP_06261661.1| conserved domain protein [Lactobacillus gasseri 224-1]
 gi|282556061|gb|EFB61681.1| conserved domain protein [Lactobacillus gasseri 224-1]
          Length = 55

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFD-SLNETAKFMRISNHQA 372
            + LD  +++ L   +    +Q F+T TD       + +  K   IS    
Sbjct: 1   MSELDHRRQSRLLNYI-HGKTQTFITTTDLEGISWEIVKEPKVYHISAGTI 50


>gi|282876153|ref|ZP_06285020.1| ATPase family associated with various cellular activities (AAA)
           [Staphylococcus epidermidis SK135]
 gi|281295178|gb|EFA87705.1| ATPase family associated with various cellular activities (AAA)
           [Staphylococcus epidermidis SK135]
 gi|329729373|gb|EGG65779.1| ATPase, AAA family [Staphylococcus epidermidis VCU144]
 gi|329732931|gb|EGG69276.1| ATPase, AAA family protein [Staphylococcus epidermidis VCU028]
          Length = 263

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 77/246 (31%), Gaps = 13/246 (5%)

Query: 18  YASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTF 76
           +   + +F     I + G  G GKT + E +S +      +     D+       F +  
Sbjct: 14  FEDAKALFQLNKNILLKGPTGSGKTKLAETLSHVMKLPMHQVNCSVDLDTESLLGFKTIH 73

Query: 77  ARVEGMEGL--ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL--RISWLVPSMDRI 132
              EG + +   D  +    ++   +   +IN      +  LN  L  R     P    +
Sbjct: 74  TNEEGHQEIVFIDGPVIKAMKEGHILYIDEINMAKPETLPILNGVLDYRRQLTNPYTGEV 133

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS-SIEAQMA 191
                         ++ AI+  +   +      ++ R  ++   Y D       I+ Q  
Sbjct: 134 IKAAPGF------NVIAAINEGYVGTLP-MNEALKNRFIVIEVDYIDGDILKTVIKEQSK 186

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
               ++    V+    L ++  +    E    I+  +             A++     KL
Sbjct: 187 LQDEQLIQHIVKFNEDLRTMTKQGQISEEAASIRALIDLSDLATVMPIERAVQRTIIDKL 246

Query: 252 FDGRKM 257
            D R+ 
Sbjct: 247 EDEREQ 252


>gi|317010483|gb|ADU84230.1| hypothetical protein HPSA_01030 [Helicobacter pylori
          SouthAfrica7]
          Length = 1045

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 10/53 (18%)

Query: 5  IKI--KFLNISEFRNY-ASLRLVFDA-------QHTIFVGDNGVGKTNILEAI 47
          +K+  + L + +FRN   +  L+ ++          + VG+N VGK+N+LEA+
Sbjct: 1  MKLYKRVLKLHQFRNLSKNSELLLNSDFEEKPGGLMVLVGENSVGKSNVLEAL 53


>gi|307129516|ref|YP_003881532.1| ABC transporter ATP-binding protein [Dickeya dadantii 3937]
 gi|306527045|gb|ADM96975.1| ABC transporter, ATP-binding protein [Dickeya dadantii 3937]
          Length = 249

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISF 49
          +    + T F+G+NG GK+ +LEAI+ 
Sbjct: 36 IDPHPKVTFFIGENGSGKSTLLEAIAV 62


>gi|302309923|ref|XP_451012.2| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|199424766|emb|CAH02600.2| KLLA0A00286p [Kluyveromyces lactis]
          Length = 1224

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 45/145 (31%), Gaps = 13/145 (8%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG-FRRAS 60
           + IK + IS F+ Y +  +   F   H + VG NG GK+N   AI   LS      +R  
Sbjct: 2   VHIKTVIISGFKTYKNRTVVENFSPHHNVVVGSNGSGKSNFFAAIRFVLSEENSNLKRED 61

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLA---------DISIKLETRDDRSVRCLQINDVVIR 111
                  G+    S F  +   +               +++            IND    
Sbjct: 62  RKGFIYQGAGQVMSAFVEIIFDDPENLMLAPLRNDTGEVRIRRTVGLKKDEYMINDKNST 121

Query: 112 VVDELNKHLRISWLVPSMDRIFSGL 136
             D       + +   +   I    
Sbjct: 122 RQDVRRVLENVGFSTSNPYNIVPQG 146



 Score = 39.9 bits (92), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 279  DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            D+ + +   S G++ V  + + LA           AP  L DEI A LD+  R A+ R +
Sbjct: 1112 DEQLRVEQLSGGQKTVCAIALILA-----IQMVDPAPFYLFDEIDAALDKQYRIAVARTI 1166

Query: 339  TDIG--SQIFMTGTDKSVFDSLNETAKFMRIS 368
             ++   +Q   T       D +N    F R+ 
Sbjct: 1167 KNLSDTAQFICTT---FRTDMINVADTFFRVK 1195


>gi|189467069|ref|ZP_03015854.1| hypothetical protein BACINT_03452 [Bacteroides intestinalis DSM
           17393]
 gi|189435333|gb|EDV04318.1| hypothetical protein BACINT_03452 [Bacteroides intestinalis DSM
           17393]
          Length = 554

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 50/256 (19%), Positives = 83/256 (32%), Gaps = 38/256 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F A  ++  G+ G GK+ IL AI  L    +  +  R+ +  
Sbjct: 2   LRSLYIQNYALIEKLDISFGAGFSVITGETGAGKSIILGAIGLLLGQRAEVKAIRQGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            V   R   S      F     +E   +  ++ E       R   IND       + EL 
Sbjct: 62  CVIEARFDISAYGMEPFFEENELEYEEECILRREVYASGKSRAF-INDTPASLVQMKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           + L           +       +   LD ++   D     ++  ++ L R       +  
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLD-ILSHND----EQLSVYQSLYRE----WKQTQ 169

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            D          +A+L     IAR E   A    I    Q E      LS     + + +
Sbjct: 170 QD----------LADL-----IARAEQNKADEDYIR--FQLEQLEEANLSAGEQEELEQE 212

Query: 238 QSFCALKEEYAKKLFD 253
               +  EE    LF 
Sbjct: 213 TDTLSHAEEIKAGLFR 228


>gi|327311397|ref|YP_004338294.1| Iron (III) ABC transporter ATP-binding protein [Thermoproteus
           uzoniensis 768-20]
 gi|326947876|gb|AEA12982.1| Iron (III) ABC transporter, ATP-binding protein [Thermoproteus
           uzoniensis 768-20]
          Length = 231

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 10/55 (18%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           STG++++VL+   LA  RL+          LLDE +A+LD   + A+  ++  + 
Sbjct: 112 STGQKRLVLLAKALAEGRLV----------LLDEPTANLDPAHKAAIMGVLQRLK 156



 Score = 37.2 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 20 SLRLVFDAQHTIFVGDNGVGKTNILEAI 47
           +         + +G NG GKT +L AI
Sbjct: 18 DVSFDIVEGLNLVLGPNGSGKTTLLRAI 45


>gi|319791946|ref|YP_004153586.1| smc domain protein [Variovorax paradoxus EPS]
 gi|315594409|gb|ADU35475.1| SMC domain protein [Variovorax paradoxus EPS]
          Length = 390

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +    + T+  G NG GK+++  A+  L+
Sbjct: 2  LSALAIANYRSLRQLTVPLG-RLTVVTGANGSGKSSVYRAMRLLA 45


>gi|219684901|ref|ZP_03539843.1| P115 protein [Borrelia garinii PBr]
 gi|219671846|gb|EED28901.1| P115 protein [Borrelia garinii PBr]
          Length = 815

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++            +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIVLFGFKSFLNRQEFEISGNLSFIVGPNGCGKSNLIDAVRFCMGEDNLKFLRVED 60

Query: 61 YADVT 65
           +D+ 
Sbjct: 61 ISDLI 65


>gi|121611377|ref|YP_999184.1| chromosome segregation protein SMC [Verminephrobacter eiseniae
           EF01-2]
 gi|121556017|gb|ABM60166.1| chromosome segregation protein SMC [Verminephrobacter eiseniae
           EF01-2]
          Length = 1175

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 87/287 (30%), Gaps = 33/287 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + +S F+++A     +   Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1   MRLTSIKLSGFKSFAEPTTFMLPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES 60

Query: 61  YADVTRIG-----SPSFFSTFARVEGMEGLADISIK-------LETRDDRSVRCLQINDV 108
             DV   G       S  S     +  +  A                         +N+ 
Sbjct: 61  MQDVIFNGTTTRKQASRASVELVFDNSDHRAGGQWGQYGEVAVRRVLTRDGASSYYLNNQ 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D         L           ++ RI      E R FL+        +++ R  
Sbjct: 121 PVRRRDVQDVFLGTGLGPRAYAIIGQGTISRIIESRPEELRLFLEEAAG--VSKYKERRR 178

Query: 161 DF-ERLMRGRNRLLTEGYFDSSW---CSSIEAQMAELGVKINIAR-VEMINALSSLIMEY 215
           +   RL   R  L                +E Q AE+  K    +    +       ++ 
Sbjct: 179 ETENRLADTRENLTRVEDILRELNSNLDKLEKQ-AEVAAKYQRLQTQAQLRQHQQWFLKR 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            + +     KL   G       Q+  A        L   R+    + 
Sbjct: 238 AEAQ-AEQAKLHQDGLQAANDLQARIAELRAVESDLETIRQAHYAAG 283


>gi|85111188|ref|XP_963818.1| hypothetical protein NCU00901 [Neurospora crassa OR74A]
 gi|28925556|gb|EAA34582.1| conserved hypothetical protein [Neurospora crassa OR74A]
 gi|38636462|emb|CAE81997.1| RAD50 homolog uvs-6 [Neurospora crassa]
          Length = 1314

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 67/312 (21%)

Query: 6   KIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-------- 54
           K++ ++I   R++       + F+   T+ VG NG GKT I+E + + + G         
Sbjct: 3   KLEKMSILGVRSFGPRHPEAIAFNTPLTLIVGYNGSGKTTIIECLKYATTGELPPNSKSG 62

Query: 55  --------------------GFRRASYADVTRIGSPSFFST------FARVEGMEGLADI 88
                                FR             SF  T        +    +   + 
Sbjct: 63  AFIHDPNLVGEKDVQAQIKLSFRSTV--------GESFVVTRNVQLAVTKTSSKQKTLEG 114

Query: 89  SIKLETRDDRSV---RCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS--MERRRF 143
           S+ L    DR V   R + +N +V   +      L         + ++        ++RF
Sbjct: 115 SLLLRANGDRQVLSTRVVDLNKLVPEKLGVSPAVLDAVIFCHQDESLWPMSPGADLKKRF 174

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGYFDSSWCSSIEAQMAELGVK 196
               +F     + + + + + L + +   L        +   +      ++ ++++L  +
Sbjct: 175 --DEIFEAKK-YAKVIDNIKLLRKTKGEELRLLRMQEAQDKENKERADKVDRELSKLIRE 231

Query: 197 INIARVEMINALSSLIME----YVQKENFPHIKLSLTGFLDGKFDQSF--CALKEEYAKK 250
           +   R +  N L   I +      QK    +  L +   L  K ++         E  ++
Sbjct: 232 LQEDRDKC-NELQKQIEDEDVRIKQKWEQANSFLKIVNELQTKQEKLEYKKDAIAELRER 290

Query: 251 LFDGRKMDSMSR 262
           + +  + D   R
Sbjct: 291 IEESTESDEYLR 302


>gi|332884701|gb|EGK04958.1| hypothetical protein HMPREF9456_00711 [Dysgonomonas mossii DSM
          22836]
          Length = 368

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          ++++ I  F++   + L       I +G NG GK+N +
Sbjct: 2  VEYIKIQGFKSIKEVELELKP-VNILIGGNGAGKSNFI 38


>gi|325282566|ref|YP_004255107.1| ABC transporter-like protein [Deinococcus proteolyticus MRP]
 gi|324314375|gb|ADY25490.1| ABC transporter related protein [Deinococcus proteolyticus MRP]
          Length = 715

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
                S GEQ  + + + LA             +LLLDE + HLD   R  L   + + G
Sbjct: 169 KARSLSGGEQTRLALALTLA---------REPELLLLDEPTNHLDIRMREWLEGWLRNFG 219

Query: 343 SQIFMTGTDKSVFDSLNETAKFM 365
             + +T  D+   D++   + ++
Sbjct: 220 GGVLLTSHDRDFLDAVATRSLWL 242


>gi|320531526|ref|ZP_08032478.1| hypothetical protein HMPREF9057_00345 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136265|gb|EFW28261.1| hypothetical protein HMPREF9057_00345 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 280

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 66/221 (29%), Gaps = 34/221 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L+I +        L      T   G+ G GKT +L ++  L   R         + R
Sbjct: 2   IESLHIEDLGVIEEADLPLSRGLTALTGETGAGKTMVLTSLGLLLGQRAETT-----IVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISI---------------KLETRDDRSVRCLQINDVVIR 111
            G+       A +   +      +               +      RS   L    V   
Sbjct: 57  TGAERSLVEGAFLVDPDSRVAARVVEAGGDLDDDLLLASRTVPASGRSRAYLGGRSVPAS 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
           V+ E+    R+  +    D++    +  +R  LD +       H      + +  + R R
Sbjct: 117 VLSEVGG--RLVSVHGQADQLRLRSTAAQRAALDSLGGQ---DHAALCRRYAKAYQARRR 171

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIAR--VEMINALSS 210
                          +A      V++   R  +E +  +S 
Sbjct: 172 A-------DQELQEWQASAQARAVEVAQLRTWLEALEEISP 205


>gi|262374264|ref|ZP_06067540.1| predicted protein [Acinetobacter junii SH205]
 gi|262310822|gb|EEY91910.1| predicted protein [Acinetobacter junii SH205]
          Length = 588

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          ++I+ + +  +R    + +V +   T+ VG N  GKT+ 
Sbjct: 1  MRIEKVRVEGYRLLEDIEIVLEKNSTVIVGRNNSGKTSF 39


>gi|237718362|ref|ZP_04548843.1| DNA repair protein recN [Bacteroides sp. 2_2_4]
 gi|229452295|gb|EEO58086.1| DNA repair protein recN [Bacteroides sp. 2_2_4]
          Length = 553

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 64/201 (31%), Gaps = 17/201 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  R  +  
Sbjct: 2   LRSLYIQNYALIEKLDISFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRHGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            +   R   S      F     +E   +  ++ E +     R   IND       V EL 
Sbjct: 62  CIIEARFDISAYGMRPFFEENELEYDEECILRREVQSSGKSRAF-INDTPASLAQVKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMV---FAIDPRHR--RRMIDFERLMRGRNRL 172
           + L           +       +   LD +     A+   H         +R +     L
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLDILAHNDAALAKYHLCYDEWKQTDRELAELVSL 178

Query: 173 LTEGYFDSSWCSSIEAQMAEL 193
             +   D  +      Q+ E 
Sbjct: 179 AEKSRSDEDYIRFQLEQLEEA 199


>gi|256379295|ref|YP_003102955.1| hypothetical protein Amir_5288 [Actinosynnema mirum DSM 43827]
 gi|255923598|gb|ACU39109.1| SMC domain protein [Actinosynnema mirum DSM 43827]
          Length = 610

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +   +I  FR+ A +  +     TI  G N  GK++ L+A+ FL
Sbjct: 1  MHLANFSIRGFRSLAEVEDIPIGSPTILAGPNDGGKSSALDAVKFL 46


>gi|242010715|ref|XP_002426105.1| DNA double-strand break repair Rad50 ATPase, putative [Pediculus
           humanus corporis]
 gi|212510142|gb|EEB13367.1| DNA double-strand break repair Rad50 ATPase, putative [Pediculus
           humanus corporis]
          Length = 1030

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 11/138 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD--- 63
           I  +    F +Y + ++   +   + +G NG GK++I+ A+  L  G   +    AD   
Sbjct: 11  IVRIETYNFMSYDNFKIYPRSNLNLIIGPNGTGKSSIVCAV-LLCIGGKLKTLGRADHLS 69

Query: 64  -VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
              + G          +   +G  D+  +    ++ S   L    +  + +++L  + +I
Sbjct: 70  SYIKSGCNE-SKIEIELFNPDGPNDVITRKFFTNNHSEFFLNGKSITGKKLEQLRCNYKI 128

Query: 123 SWLVPSMDRIFSGLSMER 140
                  D + + L  ER
Sbjct: 129 -----EPDNLCTFLPQER 141


>gi|182417795|ref|ZP_02949110.1| ABC transporter, ATP-binding protein [Clostridium butyricum 5521]
 gi|237667217|ref|ZP_04527201.1| SMC domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378519|gb|EDT76050.1| ABC transporter, ATP-binding protein [Clostridium butyricum 5521]
 gi|237655565|gb|EEP53121.1| SMC domain protein [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 242

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          IK L++   +N     L   +  T FVG+NG GK+ +LEAI+ 
Sbjct: 24 IKNLHVV--KNLNR--LCLSSNVTFFVGENGSGKSTLLEAIAV 62


>gi|195941784|ref|ZP_03087166.1| P115 protein [Borrelia burgdorferi 80a]
 gi|216264295|ref|ZP_03436287.1| P115 protein [Borrelia burgdorferi 156a]
 gi|226320781|ref|ZP_03796337.1| p115 protein [Borrelia burgdorferi 29805]
 gi|215980768|gb|EEC21575.1| P115 protein [Borrelia burgdorferi 156a]
 gi|226233836|gb|EEH32561.1| p115 protein [Borrelia burgdorferi 29805]
 gi|312148111|gb|ADQ30770.1| P115 protein [Borrelia burgdorferi JD1]
          Length = 815

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++            +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIVLLGFKSFLNRQEFEIGENLSFIVGPNGCGKSNLIDAVRFCMGEDNLKFLRVED 60

Query: 61 YADVTRIGSPSFFSTFARV 79
           +D+  + S S  S FA +
Sbjct: 61 ISDLISV-SKSGKSNFAEI 78


>gi|162606196|ref|XP_001713613.1| hypothetical protein GTHECHR1115 [Guillardia theta]
 gi|13794533|gb|AAK39908.1|AF165818_116 hypothetical protein [Guillardia theta]
          Length = 1019

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 5  IKIKFLNISEFRNYASL-RLV-FDAQHTIFVGDNGVGKTNILEAISFL 50
          + I  + +  F +Y  + +L        +  G NG GK+N + +I + 
Sbjct: 1  MSICKVRLLNFLSYKHIFQLEDISPGINLVYGTNGSGKSNFIRSILYF 48


>gi|26553757|ref|NP_757691.1| ABC transporter ATP-binding protein [Mycoplasma penetrans HF-2]
 gi|26453764|dbj|BAC44095.1| ABC transporter ATP-binding protein [Mycoplasma penetrans HF-2]
          Length = 678

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 18/106 (16%)

Query: 271 SDLIVDYCD---KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLD 327
            D++  +     K ++    S+G++K +L+             +    +L++DE +A+LD
Sbjct: 485 DDILKTFNMENLKKVSPNKFSSGQKKKILLA---------QALSNNPDLLIMDEPTANLD 535

Query: 328 EDKRNALFRIVTDIGSQ---IFMTGTDKSVFDSLNETAKFMRISNH 370
              R   F I+  +  Q   IF++     +   L+  A  + I + 
Sbjct: 536 PKSRIEFFDILKKLQLQGKSIFISS---HILSELDIYADAITILDG 578


>gi|325963215|ref|YP_004241121.1| ABC-type cobalt transporter, ATPase component [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469302|gb|ADX72987.1| ABC-type cobalt transport system, ATPase component [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 241

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 12/86 (13%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE++++ +   LA             +L+LDE S  LD   R  L R +  +  QI M
Sbjct: 142 SGGERQLMALAAVLAV---------NPKVLVLDEPSTLLDLRNRELLRRTLAGLDQQIIM 192

Query: 348 TGTDKSVFDSLNETAKFMRISNHQAL 373
           +  D  +   ++   + + +   Q +
Sbjct: 193 STHDLELALEMD---RVLVVEQGQVV 215


>gi|296445565|ref|ZP_06887521.1| DNA repair protein RecN [Methylosinus trichosporium OB3b]
 gi|296256970|gb|EFH04041.1| DNA repair protein RecN [Methylosinus trichosporium OB3b]
          Length = 561

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 38/313 (12%), Positives = 80/313 (25%), Gaps = 29/313 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L F +  T   G+ G GK+ +L+A       RG      A + R
Sbjct: 2   LVRLSIRDIVLIDRLDLDFASGLTTLTGETGAGKSILLDAFLLALGARG-----DAALVR 56

Query: 67  IGSPSFFSTF---------ARVEGMEGLADISIKLETRD---DRSVRCLQINDVVIRVVD 114
            G      T          A V   E   D   ++  R            +ND  +    
Sbjct: 57  AGETQGQVTAVFDLPPLHSAHVAAREFGLDTGEEMVLRRVQTADGRTRAFVNDQPVSAQA 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI-----DPRHRRRMIDFERLMRGR 169
                  +  +    D          R  +D                  +    + +   
Sbjct: 117 LRAIGAELVEIHCQHDDRALVDPSAHRALVDAHGGHTGLAAETRALHGALQKARKSLAEE 176

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELG-----VKINIARVEMINALSSLIMEYVQKENFPHI 224
              +     ++ +      ++  L        +   R + +     +  +          
Sbjct: 177 EARVAAARAEADYLRHAVEELEALAPQKGEEALLAERRQSMQRSEKVAGDLRDALAAFAG 236

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI 284
           + S    +     +    L +  A +L +       +    +G     L     D     
Sbjct: 237 ERSPASEIAAASRRLERRLPQ--APQLLEPPARAISAALDALGVAEQVLEQALADADFDP 294

Query: 285 AHGSTGEQKVVLV 297
                 E+++  +
Sbjct: 295 RELERIEERLFAL 307


>gi|262374015|ref|ZP_06067292.1| DNA repair protein RecN [Acinetobacter junii SH205]
 gi|262311026|gb|EEY92113.1| DNA repair protein RecN [Acinetobacter junii SH205]
          Length = 557

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 23/161 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +  L +  F     L L  +    +  G+ G GK+ +L+A   LS   G R   
Sbjct: 1   MDAFM-LTHLTLINFALADHLALDIEQGFNVLTGETGAGKSLLLDA---LSACLGERT-- 54

Query: 61  YADVTRIGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVR-CLQIND 107
             +  R G+     T               ++         I L      + R    IN 
Sbjct: 55  DTNYVRYGADKADVTAIFSYQADSAEANWLIDHELDDESGEIHLRRVIFATGRSKAWING 114

Query: 108 VV--IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR 146
               +  + E+ + L   +   S  ++        + +LDR
Sbjct: 115 RPSSLAELKEIGRLLVQLYSQHSQQQLLE--PPYPKHWLDR 153


>gi|239611549|gb|EEQ88536.1| cohesin complex subunit [Ajellomyces dermatitidis ER-3]
          Length = 1266

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 12 ISEFRNYA-SLRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRASYADVTRI 67
          + +F++Y     L+F DA  T  +G NG GK+N ++AISF+   +    R     D+   
Sbjct: 5  VIDFKSYKGHHTLLFGDAFFTSIIGPNGSGKSNSMDAISFVLGIKSSHLRSTHLRDLVYR 64

Query: 68 G 68
          G
Sbjct: 65 G 65


>gi|238759664|ref|ZP_04620824.1| DNA repair protein recN [Yersinia aldovae ATCC 35236]
 gi|238702092|gb|EEP94649.1| DNA repair protein recN [Yersinia aldovae ATCC 35236]
          Length = 553

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 82/276 (29%), Gaps = 32/276 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F +  T   G+ G GK+  ++A+      R         + R
Sbjct: 2   LAQLTISNFAIVRELEIDFQSGMTAITGETGAGKSIAIDALGLCLGSRS-----DGSMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVI--RV 112
           +G+               S    +E           L        R    IN   +    
Sbjct: 57  LGATRADICARFSLADTPSARQWLENNHLDESNECLLRRAIGTDGRSRGFINGTPVPLSQ 116

Query: 113 VDEL--------NKHLRISWLVPSMDRIFSGLSMERRRFLDRM--VFAIDPRHRRRMIDF 162
           + EL         +H     L P   +       ++   L  M   +    +  R +   
Sbjct: 117 LRELGQQLIQIHGQHAHQLLLKPEHQKHLLDAYADQSALLAEMKAAYQTWHQSCRALALH 176

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN--ALSSLIMEYVQKEN 220
           ++    RN       +     +S   Q+ E   +I+     + N   L SL  + +Q  +
Sbjct: 177 QQQSLERNARRELLQYQLKELNSFAPQVGEY-EQIDAEYKRLANSGQLLSLSQQTLQLLS 235

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
                  L+     K   +  A  +E    L +  +
Sbjct: 236 DDEQNNVLSQLYAAKHQLTELAGMDEQFNNLLNMLE 271


>gi|229157605|ref|ZP_04285681.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 4342]
 gi|228625883|gb|EEK82634.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 4342]
          Length = 247

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 31 QSLAFHPNVTFIIGENGTGKSTLLEAIAIALGFNAEGGTKNFR 73


>gi|218531130|ref|YP_002421946.1| DNA repair protein RecN [Methylobacterium chloromethanicum CM4]
 gi|240139706|ref|YP_002964183.1| DNA repair protein RecN [Methylobacterium extorquens AM1]
 gi|254562118|ref|YP_003069213.1| DNA repair protein RecN [Methylobacterium extorquens DM4]
 gi|218523433|gb|ACK84018.1| DNA repair protein RecN [Methylobacterium chloromethanicum CM4]
 gi|240009680|gb|ACS40906.1| DNA repair protein RecN [Methylobacterium extorquens AM1]
 gi|254269396|emb|CAX25362.1| DNA repair protein RecN [Methylobacterium extorquens DM4]
          Length = 566

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M  ++ I+ + + +      L L F    T+  G+ G GK+ +L+A +    GRG     
Sbjct: 1  MLVQLAIRDIVLID-----KLELTFSGGLTVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61 YADVTRIGSPSFFSTFA 77
             + R G      T  
Sbjct: 51 DGGLVRQGEAQGGVTAV 67


>gi|113913515|gb|ABI48901.1| RAD50 [Saccharomyces pastorianus]
          Length = 1312

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I  L+I   R++ S     + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  AIYKLSIQGIRSFDSNDRETIEFGKPLTLIVGMNGSGKTTIIECLKYATTG 53


>gi|260063109|ref|YP_003196189.1| DNA repair protein RecN [Robiginitalea biformata HTCC2501]
 gi|88784678|gb|EAR15848.1| DNA repair protein RecN [Robiginitalea biformata HTCC2501]
          Length = 551

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA-SYAD-- 63
           +  L I  +     LR+ F    T   G+ G GK+ +LE++  +   R  R A    +  
Sbjct: 2   LTHLAIRNYALIEDLRVDFKGGLTTITGETGAGKSILLESLGLVLGNRADRSALRDTEKK 61

Query: 64  -VTRI----GSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            V       G+      F     ++  A   ++ E R +   R   IND  +
Sbjct: 62  CVVEAEFAVGAYPGMREFFETRDLDYDAQTLLRREIRPNGKSRAF-INDTPV 112


>gi|194335819|ref|YP_002017613.1| DNA repair protein RecN [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308296|gb|ACF42996.1| DNA repair protein RecN [Pelodictyon phaeoclathratiforme BU-1]
          Length = 567

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L I  F     L + F+   TI  G+ G GK+ ++ A+S +   R       +D+ R
Sbjct: 2  LVSLYIRNFALIQELTVSFNPGLTIITGETGAGKSILVGALSLVLGERS-----SSDLVR 56

Query: 67 IGSPSFFSTFARVEGMEGLAD 87
           G+          +      +
Sbjct: 57 SGTSKAVIEAILNDVHSEKIE 77


>gi|326384766|ref|ZP_08206443.1| DNA repair protein RecN [Gordonia neofelifaecis NRRL B-59395]
 gi|326196574|gb|EGD53771.1| DNA repair protein RecN [Gordonia neofelifaecis NRRL B-59395]
          Length = 580

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 87/286 (30%), Gaps = 44/286 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----F 56
           M   + I+ L +       S    F    T+  G+ G GKT I+ ++  LS GR      
Sbjct: 1   MLEELSIRSLGV-----LESASAQFHPGFTVLTGETGAGKTMIVTSLRLLSGGRADAGRV 55

Query: 57  RRASYADVT----RIGSPSFFSTFARVEGMEGLADISIKLETR----DDRSVRCLQINDV 108
           R      +     R+ +     +    +    + D    +  R    D RS   L    V
Sbjct: 56  RTGDAKAIVEGRFRLPADRTVVSELLEDTGADVDDDDTLIAARTVNADGRSRAHLGGRSV 115

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERR----RFLDRMVFAIDPRHRRRMIDF-- 162
            +  + +L   L          R+      ++R    R+    V     ++R     +  
Sbjct: 116 PVGTLAQLTGELLAIHGQNDQLRLIR--PDQQRGALDRYAGSSVSTTLTKYRSARSAWID 173

Query: 163 -----------ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
                       R +      L  G  +    +    + AEL   I   R+  +  + + 
Sbjct: 174 LLDELDRRRANSRELAQEADRLKFGIDEIDAVAPEPGEDAELIATI--RRMTDLEEIRTT 231

Query: 212 IMEYVQKENFPHIKL------SLTGFLDGKFDQSFCALKEEYAKKL 251
             +  +               ++   L+   D++   L+   A+ L
Sbjct: 232 AAQAQEIVAGAEGASVVDGLGTVRSLLESAADEALRELQPRVAEAL 277


>gi|256587803|gb|ACU98934.1| putative ATPase [Propionibacterium jensenii]
          Length = 944

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEA 46
          +++  +++  FR+     L        I  G N VGKT+++EA
Sbjct: 1  MRLHRIHVENFRSIHERTLTLPDCGLVIAEGLNEVGKTSMIEA 43


>gi|253578519|ref|ZP_04855791.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850837|gb|EES78795.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 563

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 10/74 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   + +K L +        + + F     I  G+ G GK+ +L ++  +   +     +
Sbjct: 1  MLAHLHVKNLAL-----IEEIEVEFGPGLNILTGETGAGKSILLGSMQLILGAK-----T 50

Query: 61 YADVTRIGSPSFFS 74
            ++ R  +     
Sbjct: 51 SKNMIRENASYALV 64


>gi|224008570|ref|XP_002293244.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220971370|gb|EED89705.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 1403

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 7  IKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  L+I   R++        + F    TI VG NG GKT I+E++ +   G
Sbjct: 4  ISKLSIRGVRSFSPNDEEQVIGFCFPLTIIVGANGCGKTTIIESLKYAVTG 54


>gi|113913513|gb|ABI48900.1| RAD50 [Saccharomyces cariocanus]
          Length = 1312

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I  L+I   R++ S     + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  AIYKLSIQGIRSFDSNDRETIEFGKPLTLIVGMNGSGKTTIIECLKYATTG 53


>gi|145589954|ref|YP_001156551.1| DNA repair protein RecN [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048360|gb|ABP34987.1| DNA replication and repair protein RecN [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 556

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 87/259 (33%), Gaps = 37/259 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ +++ +F     L L F +  T+  G+ G GK+ +L+A+S +   R     + +   R
Sbjct: 2   LQTISLRDFVIVDQLELDFSSGFTVLTGETGAGKSILLDALSLVLGER-----ADSSQIR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRD-----------------DRSVRCLQINDVV 109
            GS     +       E L+  S  L+ +                          IN  V
Sbjct: 57  EGSTRAEISALFQINPEQLSHFSQWLDEQGFPVEDGGQSLLLKRTVESNGRSRAFINGSV 116

Query: 110 I--RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
                + E    L       +   +  G +   R  LDR    + P        F+ L  
Sbjct: 117 ATLAQLREAGDQLVDIHGQHAHQLLLKGGAQ--RELLDRHAGLL-PLASEVAQAFKTLND 173

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
            R RL                Q  E   +    ++E +NAL+    E+   ++  H +L+
Sbjct: 174 SRRRLTQAENA---------GQDIERERERLEWQLEELNALAPQSGEWATIQS-EHDRLA 223

Query: 228 LTGFLDGKFDQSFCALKEE 246
               L G   ++   L + 
Sbjct: 224 NGAKLIGGCQEAIEILSDA 242


>gi|12597247|dbj|BAB21523.1| UVS6 [Neurospora crassa]
          Length = 1314

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 102/312 (32%), Gaps = 67/312 (21%)

Query: 6   KIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-------- 54
           K++ ++I   R++       + F+   T+ VG NG GKT I+E + + + G         
Sbjct: 3   KLEKMSILGVRSFGPRHPEAIAFNTPLTLIVGYNGSGKTTIIECLKYATTGELPPNSKSG 62

Query: 55  --------------------GFRRASYADVTRIGSPSFFST------FARVEGMEGLADI 88
                                FR             SF  T        +    +   + 
Sbjct: 63  AFIHDPNLVGEKDVQAQIKLSFRSTV--------GESFVVTRNVQLAVTKTSSKQKTLEG 114

Query: 89  SIKLETRDDRSV---RCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS--MERRRF 143
           S+ L    DR V   R + +N +V   +      L         + ++        ++RF
Sbjct: 115 SLLLRANGDRQVLSTRVVDLNKLVPEKLGVSPAVLDAVIFCHQDESLWPMSPGADLKKRF 174

Query: 144 LDRMVFAIDPRHRRRMIDFERLMRGRNRLLT-------EGYFDSSWCSSIEAQMAELGVK 196
               +F     + + + + + L + +   L        +   +      ++ ++++L  +
Sbjct: 175 --DEIFEAKK-YAKVIDNIKLLRKTKGEELRLLRMQEAQDKENKERADKVDRELSKLIRE 231

Query: 197 INIARVEMINALSSLIME----YVQKENFPHIKLSLTGFLDGKFDQSF--CALKEEYAKK 250
           +   R +  N L   I +      QK    +  L +   L  K ++         E  ++
Sbjct: 232 LQEDRDKC-NELQKQIEDEDVRIKQKWEQANSFLKIVNELQTKQEKLEYKKDAIAELRER 290

Query: 251 LFDGRKMDSMSR 262
           + +  + D   R
Sbjct: 291 IEESTESDEYLR 302


>gi|71018099|ref|XP_759280.1| hypothetical protein UM03133.1 [Ustilago maydis 521]
 gi|46099130|gb|EAK84363.1| hypothetical protein UM03133.1 [Ustilago maydis 521]
          Length = 1629

 Score = 43.4 bits (101), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 4   RIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
           R+ I  + +++F++YA    +  F    +  VG NG GK+N+++++ F+   R    R+ 
Sbjct: 281 RLVIHKMVLNDFKSYAGRQEIGPFHKSFSSVVGPNGSGKSNVIDSLLFVFGWRATKMRQG 340

Query: 60  SYADVTR 66
             +++  
Sbjct: 341 KLSELIH 347


>gi|284044536|ref|YP_003394876.1| DNA repair protein RecN [Conexibacter woesei DSM 14684]
 gi|283948757|gb|ADB51501.1| DNA repair protein RecN [Conexibacter woesei DSM 14684]
          Length = 556

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          M + ++++ L +          L       +  G+ G GKT +  A+  L  G+
Sbjct: 1  MLHELRVENLLL-----IERAELRLGPGLNVLTGETGAGKTMLAHALDLLLGGK 49


>gi|284108602|ref|ZP_06386420.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
 gi|283829882|gb|EFC34171.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3]
          Length = 369

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 18/113 (15%)

Query: 6   KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
            +  L I  F++   L    F     + +G NG GK+N++           F R     +
Sbjct: 4   HLNRLTIRGFKSIRQLEDFEF-KSLNVLIGANGGGKSNLI----------SFFRM-LQAI 51

Query: 65  TRIGSPSFFSTFARVEGM---EGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
                 S+      +  +          ++ ETR        +I     R+ D
Sbjct: 52  INGNLDSYIRGSGGISDLLFNGRKTTRRLEFETRFGPRGYRFKI--KPGRLRD 102


>gi|160882254|ref|ZP_02063257.1| hypothetical protein BACOVA_00200 [Bacteroides ovatus ATCC 8483]
 gi|156112343|gb|EDO14088.1| hypothetical protein BACOVA_00200 [Bacteroides ovatus ATCC 8483]
          Length = 553

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 36/201 (17%), Positives = 64/201 (31%), Gaps = 17/201 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ L I  +     L + F+   ++  G+ G GK+ IL AI  L    +  +  R  +  
Sbjct: 2   LRSLYIQNYALIEKLDISFETGFSVITGETGAGKSIILGAIGLLLGQRADVKAIRHGASK 61

Query: 63  DVT--RIG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VVDELN 117
            +   R   S      F     +E   +  ++ E +     R   IND       V EL 
Sbjct: 62  CIIEARFDISAYGMRPFFEENELEYDEECILRREVQSSGKSRAF-INDTPASLAQVKELG 120

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMV---FAIDPRHR--RRMIDFERLMRGRNRL 172
           + L           +       +   LD +     A+   H         +R +     L
Sbjct: 121 EQLIDV--HSQHQNLLLNKEGFQLNVLDILAHNDAALAKYHLCYDEWKQTDRELAELVSL 178

Query: 173 LTEGYFDSSWCSSIEAQMAEL 193
             +   D  +      Q+ E 
Sbjct: 179 AEKSRSDEDYIRFQLEQLEEA 199


>gi|84995674|ref|XP_952559.1| DNA repair protein rad50 [Theileria annulata strain Ankara]
 gi|65302720|emb|CAI74827.1| DNA repair protein rad50, putative [Theileria annulata]
          Length = 1139

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRN---YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  + I   R+   Y +  L F+   T+ VG NG GKT ++E++  ++ G
Sbjct: 4  INSIEIRGIRSFTPYRTEFLQFEKPLTLIVGKNGSGKTTLVESLKAVTSG 53


>gi|147669170|ref|YP_001213988.1| SMC domain-containing protein [Dehalococcoides sp. BAV1]
 gi|146270118|gb|ABQ17110.1| SMC domain protein [Dehalococcoides sp. BAV1]
          Length = 859

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 55/176 (31%), Gaps = 32/176 (18%)

Query: 9   FLNISEFRNYASLRLVFDAQ---HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            L I  F  Y      F           G NG GK+ +++AI++   G+  R  S  DV 
Sbjct: 5   KLKIKNFMCYRGEIPPFSFNGIHTACICGQNGAGKSALIDAITWALWGKS-RAKSDDDVI 63

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            +       +      ++      +    R  +  +    N                   
Sbjct: 64  SLNEQEAEVS------LDFEISGELYQVIRQRQRPKKAGTNGQ----------------- 100

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRM-IDFERLMRGRNRLLTEGYFDS 180
             S+  +FS    + R      +   + +    + +D++  +   +  L +G+ + 
Sbjct: 101 --SLLSLFSLQDEKPRNITGDTLTQTEKKIISILHMDYDTFI--NSAFLRQGHANQ 152


>gi|322705558|gb|EFY97143.1| DNA repaire protein UVS6 [Metarhizium anisopliae ARSEF 23]
          Length = 1307

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I  L+IS  R+++      + F+   T+ VG NG GKT I+E + + + G
Sbjct: 3  RIDKLSISGVRSFSPSVREAIQFNTPLTLIVGYNGSGKTTIIECLKYATTG 53


>gi|317491003|ref|ZP_07949439.1| DNA repair protein RecN [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920550|gb|EFV41873.1| DNA repair protein RecN [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 553

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 69/228 (30%), Gaps = 37/228 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+     GR       A + R
Sbjct: 2   LTQLTISNFAIVRELEIDFQRGMTAITGETGAGKSIAIDALGLCLGGRS-----EAAMVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
           + +P                  +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  LNTPRADICARFSLADTPSARQWLEQNQLDDSNECLLRRVISADGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL +HL       +   +                            +   L+     
Sbjct: 116 QLRELGQHLIQIHGQHAHQLLLK--------------SEHQKHLLDAYSNQSELLAEMQA 161

Query: 172 LLTEGYFDSSWCSSIEAQMA--ELGVKINIARVEMINALSSLIMEYVQ 217
              + +      +  + Q+A  E   ++   +++ +N  +    EY Q
Sbjct: 162 AYRQWHHSCRLLTHHQKQVAERESRKQLLQYQLKELNEFAPQAGEYEQ 209


>gi|313114151|ref|ZP_07799703.1| DNA repair protein RecN [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623560|gb|EFQ06963.1| DNA repair protein RecN [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 554

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 92/297 (30%), Gaps = 33/297 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADVT 65
           +  L I          + F     +  G+ G GK+ ++++I + L      R +    + 
Sbjct: 2   LSSLQIENVAVIQKAEVHFKPGLNVLTGETGAGKSILIDSINAILGN----RTSKD--LV 55

Query: 66  RIGSPSFFSTFARVE------------GMEGLADISIKLETRDDRSVRCLQINDVV--IR 111
           R G+       A  E            G E    + +  E   +    C +IN +     
Sbjct: 56  RTGASKAVIRAAFEEVPGTVLDSLEKAGYERSDALMLSREITAEGKSTC-RINGMPATAA 114

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE---RLMRG 168
           V+ EL   L           + +         LD          +   + +    R+ R 
Sbjct: 115 VLRELCGGLININGQHDSVGLLN--PARHLGILDD-YAQNSAEFQDYYVLYRELVRIKRE 171

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSL 228
            + ++T+          +  Q+ E+      A  E   AL S   + +   +    K++ 
Sbjct: 172 LDAMITDEAEKQRRIDLLSYQVQEIEDAGLTAGEE--QALESR-RKILANASAIRDKIAQ 228

Query: 229 TGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA 285
           +  L    D++  A+  +   +  +     +     L G     L + Y  K +   
Sbjct: 229 SYALLSGDDEASGAV--DLLGEASNAVDAAAQLDDALAGASSQLLDLYYNAKDVAAD 283


>gi|270265317|ref|ZP_06193578.1| hypothetical protein SOD_m00490 [Serratia odorifera 4Rx13]
 gi|270040721|gb|EFA13824.1| hypothetical protein SOD_m00490 [Serratia odorifera 4Rx13]
          Length = 553

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 90/255 (35%), Gaps = 34/255 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R     +  +V R
Sbjct: 2   LAQLTISNFAIVRELEIDFQPGMTAITGETGAGKSIAIDALGLCLGNR-----ADGNVVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
           +G+                   +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  LGAARADICARFSLADTPSARQWLEQNQLDDSNECLLRRVINADGRSRGF-INGTAVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL + L       +   +       +++ LD   +A +P     +   ++  +  ++
Sbjct: 116 QLRELGQCLIQIHGQHAHQLLLK--PEHQKQLLD--AYADEPA---LLAQMQQAYQRWHQ 168

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGF 231
              E           +A+      ++   +++ +N  +    E+ Q ++  + +L+ +G 
Sbjct: 169 SCRELAHHQQQSLERDAR-----KQLLQYQLKELNEFAPQAGEFEQTDS-EYKRLANSGQ 222

Query: 232 LDGKFDQSFCALKEE 246
           L     Q+   L ++
Sbjct: 223 LLTLSQQTLQLLADD 237


>gi|284041168|ref|YP_003391098.1| SMC domain protein [Spirosoma linguale DSM 74]
 gi|283820461|gb|ADB42299.1| SMC domain protein [Spirosoma linguale DSM 74]
          Length = 420

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 3  NRIKIKFLNISEFRNY-ASLRLVF------DAQHTIFVGDNGVGKTNILEAISFLS 51
           R+  K +++   R++     + F       A+  + +GDNG GKT +L+ I   +
Sbjct: 6  PRVWFKSISLENVRSFGTKQTINFTDKDGNAARWNVILGDNGTGKTTVLKCIYISA 61


>gi|207341906|gb|EDZ69838.1| YNL250Wp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1312

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I  L+I   R++ S     + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  AIYKLSIQGIRSFDSNDRETIEFGKPLTLIVGMNGSGKTTIIECLKYATTG 53


>gi|188524094|ref|ZP_03004177.1| p115 protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|198273458|ref|ZP_03205994.1| p115 protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209554096|ref|YP_002284563.1| p115 protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
 gi|195659955|gb|EDX53335.1| p115 protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
 gi|198249978|gb|EDY74758.1| p115 protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
 gi|209541597|gb|ACI59826.1| p115 protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
          Length = 981

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 83/267 (31%), Gaps = 43/267 (16%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K +    F+++   +   F    T  VG NG GK+NI++A+ ++      +  R     
Sbjct: 4   LKKIEAQGFKSFGEPIVAEFKHPMTGIVGANGTGKSNIVDALKWVIGDQSLKSMRAHK-N 62

Query: 63  DVTRIGSPSFFSTFA--------RVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRV 112
           ++   G                  V  +       IK+        +     IND ++R 
Sbjct: 63  ELLFSGGRYAPKAHIARVNLYFNNVNNVLYTEHKEIKISRVLNTKTNENTYYINDEIVR- 121

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S            +ERR+  +             +  + 
Sbjct: 122 LKDITDMFLDSGLSKGSLGIISQGAVSWFAEAKPIERRKMFEE---------ASGIGRYS 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
           +  +     L     +      +   +  L  ++       +   +    EY Q K+   
Sbjct: 173 KRKQEALSSLERANEN---LDRLNDIVVNLKKELTK-----LEKQAQRFNEYKQIKDELT 224

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAK 249
            ++L +       + ++   +  E  +
Sbjct: 225 KLELVILVRDIVHWQKNLEQITNELKE 251


>gi|254584660|ref|XP_002497898.1| ZYRO0F16038p [Zygosaccharomyces rouxii]
 gi|186703715|emb|CAQ43406.1| DNA repair protein RAD50 [Zygosaccharomyces rouxii]
 gi|238940791|emb|CAR28965.1| ZYRO0F16038p [Zygosaccharomyces rouxii]
          Length = 1304

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I  L+I   R++ S     + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  AIYKLSIQGIRSFDSNDRETIQFGKPLTLIVGSNGSGKTTIIECLKYATTG 53


>gi|185178803|ref|ZP_02964597.1| p115 protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188024147|ref|ZP_02996877.1| p115 protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188518544|ref|ZP_03004008.1| p115 protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
 gi|184209428|gb|EDU06471.1| p115 protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
 gi|188018774|gb|EDU56814.1| p115 protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
 gi|188997904|gb|EDU67001.1| p115 protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
          Length = 981

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 83/267 (31%), Gaps = 43/267 (16%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K +    F+++   +   F    T  VG NG GK+NI++A+ ++      +  R     
Sbjct: 4   LKKIEAQGFKSFGEPIVAEFKHPMTGIVGANGTGKSNIVDALKWVIGDQSLKSMRAHK-N 62

Query: 63  DVTRIGSPSFFSTFA--------RVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRV 112
           ++   G                  V  +       IK+        +     IND ++R 
Sbjct: 63  ELLFSGGRYAPKAHIARVNLYFNNVNNVLYTEHKEIKISRVLNTKTNENTYYINDEIVR- 121

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S            +ERR+  +             +  + 
Sbjct: 122 LKDITDMFLDSGLSKGSLGIISQGAVSWFAEAKPIERRKMFEE---------ASGIGRYS 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
           +  +     L     +      +   +  L  ++       +   +    EY Q K+   
Sbjct: 173 KRKQEALSSLERANEN---LDRLNDIVVNLKKELTK-----LEKQAQRFNEYKQIKDELT 224

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAK 249
            ++L +       + ++   +  E  +
Sbjct: 225 KLELVILVRDIVHWQKNLEQITNELKE 251


>gi|206973578|ref|ZP_03234496.1| ATP-dependent endonuclease of the OLD family [Bacillus cereus
          H3081.97]
 gi|206747734|gb|EDZ59123.1| ATP-dependent endonuclease of the OLD family [Bacillus cereus
          H3081.97]
          Length = 696

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 5  IKIKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K+  + I  FR+ +    +  +   T  +G N  GKT+  +A+  L  G     +   +
Sbjct: 1  MKLTKVKICNFRSFHKERTIDLED-FTSIIGSNSSGKTSFFQALLKL-FGE---TSRERE 55

Query: 64 VTRIG 68
          + R  
Sbjct: 56 ILRSD 60


>gi|151944297|gb|EDN62575.1| Mre11-Rad50-Xrs2 protein complex member [Saccharomyces cerevisiae
          YJM789]
          Length = 1312

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I  L+I   R++ S     + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  AIYKLSIQGIRSFDSNDRETIEFGKPLTLIVGMNGSGKTTIIECLKYATTG 53


>gi|56478407|ref|YP_159996.1| hypothetical protein ebA5236 [Aromatoleum aromaticum EbN1]
 gi|56314450|emb|CAI09095.1| conserved hypothetical protein, fragment [Aromatoleum aromaticum
          EbN1]
          Length = 56

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I+ + +  F++ A  +L    +    VG NG GK+ +L+AI F++
Sbjct: 2  IELIAVRNFKSLAQFKLRLH-RFNCLVGMNGAGKSTVLQAIDFIA 45


>gi|6324079|ref|NP_014149.1| Rad50p [Saccharomyces cerevisiae S288c]
 gi|131782|sp|P12753|RAD50_YEAST RecName: Full=DNA repair protein RAD50; AltName: Full=153 kDa
          protein
 gi|4273|emb|CAA32919.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|1255968|emb|CAA65494.1| RAD50 [Saccharomyces cerevisiae]
 gi|1302293|emb|CAA96157.1| RAD50 [Saccharomyces cerevisiae]
 gi|259149118|emb|CAY82360.1| Rad50p [Saccharomyces cerevisiae EC1118]
 gi|285814415|tpg|DAA10309.1| TPA: Rad50p [Saccharomyces cerevisiae S288c]
 gi|323352853|gb|EGA85155.1| Rad50p [Saccharomyces cerevisiae VL3]
          Length = 1312

 Score = 43.4 bits (101), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I  L+I   R++ S     + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  AIYKLSIQGIRSFDSNDRETIEFGKPLTLIVGMNGSGKTTIIECLKYATTG 53


>gi|291558077|emb|CBL35194.1| hypothetical protein ES1_23660 [Eubacterium siraeum V10Sc8a]
          Length = 660

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEFRNYA-----SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          + IK L +  FR +            +   TI +GDN  GKT +L+A ++   G+
Sbjct: 1  MLIKTLRMENFRQFRGTTKVDFSCDPNKNVTIILGDNTFGKTTLLQAFNWCFYGK 55


>gi|256272374|gb|EEU07357.1| Rad50p [Saccharomyces cerevisiae JAY291]
          Length = 1312

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I  L+I   R++ S     + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  AIYKLSIQGIRSFDSNDRETIEFGKPLTLIVGMNGSGKTTIIECLKYATTG 53


>gi|190409224|gb|EDV12489.1| DNA repair protein RAD50 [Saccharomyces cerevisiae RM11-1a]
          Length = 1312

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I  L+I   R++ S     + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  AIYKLSIQGIRSFDSNDRETIEFGKPLTLIVGMNGSGKTTIIECLKYATTG 53


>gi|308271200|emb|CBX27809.1| hypothetical protein N47_C18670 [uncultured Desulfobacterium sp.]
          Length = 574

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I  F     L + F    T+  G+ G GK+ I+ A++ L   R     + + + R
Sbjct: 10 LCELSIRNFAIIDDLHIRFSDGLTVLSGETGAGKSIIINAVNLLLGSR-----ATSTLVR 64

Query: 67 IGSPSF 72
           G  + 
Sbjct: 65 TGEEAA 70


>gi|296166191|ref|ZP_06848632.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898439|gb|EFG78004.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 812

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 7   IKFLNISEFRNYA---SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           ++ ++++ FR      ++ L      T+  G NG GK+ + EA+     G   R
Sbjct: 69  LESISVAGFRGIGPEVTVPLQPGPGLTVIAGRNGSGKSTLAEALELALTGVNSR 122



 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 91/283 (32%), Gaps = 40/283 (14%)

Query: 108 VVIRVVDELNKHLRISWLVP---SMDRIFSGLSMERRRFLDRMVF-------AIDPRHRR 157
              +    +   +R     P   +     S       RF+D  V         +D     
Sbjct: 402 ETQQARSSVAALIRSVVRPPLADADLSSLSSARDAYDRFVDLPVCDDLALADHVDAALPG 461

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
               +  L +  + L+          S +  ++AE  ++   A + +++ L+      V 
Sbjct: 462 LRSAYSALAQEASNLI---QSREGAWSPVALRLAEW-LQKAEASLAVVDQLA------VA 511

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDY 277
            E    + L+  G L  +          +    L     ++      L G   S  +V  
Sbjct: 512 TEALKWL-LANAGRLRNERITPLAERARKIWAALRQASNVELG-GIRLEGQKTSRRVVLQ 569

Query: 278 C--DKAITIAHG--STGEQKVVLVGIFLAHARLISNTTGFAP---ILLLDEISAHLDEDK 330
              D + T A G  S GE + + + I       I   T        L+ D+    +D  K
Sbjct: 570 AAVDGSETEAFGVMSQGELQALALAI------FIPRATSVESPFRFLVFDDPIQAMDPSK 623

Query: 331 RNALFRIVTDI--GSQIFMTGTDKSVFDSLNET---AKFMRIS 368
            +    I+T +    Q+ +   D  +  ++  +   A+ + ++
Sbjct: 624 IDGFLEILTGLAKNRQVIVMTHDNRLPAAIRASRAPARIVEVT 666


>gi|295136504|ref|YP_003587180.1| ATPase-like protein [Zunongwangia profunda SM-A87]
 gi|294984519|gb|ADF54984.1| ATPase-like protein [Zunongwangia profunda SM-A87]
          Length = 355

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +  + I  +++   L L  +    I +G NGVGK+N +
Sbjct: 2  LDRIKIEGYKSIRKLELELEP-INILIGSNGVGKSNFI 38


>gi|262369876|ref|ZP_06063203.1| ATP-dependent OLD family endonuclease [Acinetobacter johnsonii
          SH046]
 gi|262314915|gb|EEY95955.1| ATP-dependent OLD family endonuclease [Acinetobacter johnsonii
          SH046]
          Length = 693

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          ++I+ + +  +R    + +V +   T+ VG N  GKT+ 
Sbjct: 1  MRIEKVRVEGYRLLEDIEIVLEKNSTVIVGRNNSGKTSF 39


>gi|257784279|ref|YP_003179496.1| DNA repair protein RecN [Atopobium parvulum DSM 20469]
 gi|257472786|gb|ACV50905.1| DNA repair protein RecN [Atopobium parvulum DSM 20469]
          Length = 543

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +              +  T+  G+ G GKT +L +I  L   R     + A   R
Sbjct: 2   LDELRVQNVALIDDASFAPASGLTVLTGETGAGKTALLSSIKLLVGER-----ADASAVR 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISW 124
            G+ +           E    I +  +   D   R ++I+  +   V EL   +  S 
Sbjct: 57  EGTDALRVEARFFTSSEDQEGIVVSRKVSADGRGR-VEIDGHMA-SVKELAGGIGTSI 112


>gi|219685402|ref|ZP_03540221.1| p115 protein [Borrelia garinii Far04]
 gi|219673175|gb|EED30195.1| p115 protein [Borrelia garinii Far04]
          Length = 815

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++            +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIVLFGFKSFLNRQEFEISGNLSFIVGPNGCGKSNLIDAVRFCMGEDNLKFLRVED 60

Query: 61 YADVT 65
           +D+ 
Sbjct: 61 ISDLI 65


>gi|84995744|ref|XP_952594.1| smc protein [Theileria annulata strain Ankara]
 gi|65302755|emb|CAI74862.1| smc protein, putative [Theileria annulata]
          Length = 1348

 Score = 43.4 bits (101), Expect = 0.063,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 10/67 (14%)

Query: 7   IKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA----- 59
           I  + ++ F++Y  +     F  + T  VG NG GK+N+++A+ F+    GFR       
Sbjct: 43  IHKVVLNNFKSYGGVTTIGPFHKRFTSIVGPNGSGKSNVIDAMLFVF---GFRAKQIRFD 99

Query: 60  SYADVTR 66
             +++  
Sbjct: 100 KLSELIH 106


>gi|306821662|ref|ZP_07455260.1| ABC superfamily ATP binding cassette transporter [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550407|gb|EFM38400.1| ABC superfamily ATP binding cassette transporter [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 245

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 31/116 (26%)

Query: 11  NISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF--------------------- 49
           +I   +N     L FD + T F G+NG GK+ +LEAI+                      
Sbjct: 25  SIYALKNIQY--LNFDNRVTFFTGENGSGKSTLLEAIAVAYGFNPEGGTVNYNFSTYDDV 82

Query: 50  ------LSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99
                 ++  +GFRR   +   R  + SFF+   ++E    +    +       +S
Sbjct: 83  SPLCDAVTVSKGFRRPKGSYFFR--AESFFNVATKLEDYRDIIPKEVFYSRYGGKS 136


>gi|260890009|ref|ZP_05901272.1| ABC transporter, ATP-binding protein [Leptotrichia hofstadii F0254]
 gi|260860615|gb|EEX75115.1| ABC transporter, ATP-binding protein [Leptotrichia hofstadii F0254]
          Length = 261

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 45/143 (31%), Gaps = 29/143 (20%)

Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM 257
              RV  +++  +     +  E    I +S      G +D+     +E+  K +      
Sbjct: 76  IKNRVGFVSSTLNNFSSTLNGEKLEDIVISGKFNSIGIYDEVTDEDREKADKIIE----- 130

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317
                         D  + Y  K       S GEQ+  L+                  +L
Sbjct: 131 --------------DFKISYI-KNNRFGTLSQGEQRRTLLA---------RAFMNEPDLL 166

Query: 318 LLDEISAHLDEDKRNALFRIVTD 340
           +LDE  + LD   R    +++ +
Sbjct: 167 ILDEPCSGLDVTSREYFLKVLEE 189


>gi|229174696|ref|ZP_04302222.1| ABC transporter, ATP-binding protein [Bacillus cereus MM3]
 gi|228608798|gb|EEK66094.1| ABC transporter, ATP-binding protein [Bacillus cereus MM3]
          Length = 241

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 34 QSLAFHPNVTFIIGENGTGKSTLLEAIAIALGFNAEGGTKNFR 76


>gi|183598318|ref|ZP_02959811.1| hypothetical protein PROSTU_01708 [Providencia stuartii ATCC
          25827]
 gi|188020492|gb|EDU58532.1| hypothetical protein PROSTU_01708 [Providencia stuartii ATCC
          25827]
          Length = 554

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ + I  FR    L L  +   T+ +G+N  GK+++L+A++ L
Sbjct: 1  MYLERVEIYGFRGINRLSLALNNN-TVLIGENSWGKSSLLDALTIL 45


>gi|163852371|ref|YP_001640414.1| DNA repair protein RecN [Methylobacterium extorquens PA1]
 gi|163663976|gb|ABY31343.1| DNA repair protein RecN [Methylobacterium extorquens PA1]
          Length = 566

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M  ++ I+ + + +      L L F    T+  G+ G GK+ +L+A +    GRG     
Sbjct: 1  MLVQLAIRDIVLID-----KLELTFSGGLTVLTGETGAGKSILLDAFALALGGRG----- 50

Query: 61 YADVTRIGSPSFFSTFA 77
             + R G      T  
Sbjct: 51 DGGLVRQGEAQGGVTAV 67


>gi|158321310|ref|YP_001513817.1| SMC domain-containing protein [Alkaliphilus oremlandii OhILAs]
 gi|158141509|gb|ABW19821.1| SMC domain protein [Alkaliphilus oremlandii OhILAs]
          Length = 1174

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 81/268 (30%), Gaps = 41/268 (15%)

Query: 26  DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGL 85
           +       G  G GK++IL+AI+    G   R +   +     +     +F   E ++G 
Sbjct: 27  EKGLFGIFGPTGSGKSSILDAITLALYGNIARDSK--EFINTEADRGEVSF-EFEILDGS 83

Query: 86  ADISIKLETRDDRS---------VRCLQINDVVIRVVDEL-----NKHLRISWLVPSMD- 130
              + +LE    R           R ++IN   + V+ +      N+ +R+  L      
Sbjct: 84  LRKTYRLERGIKRKKNGGIETTVARIIEINGEEVTVLADSVTSVNNEVIRVIGLNAEDFT 143

Query: 131 -----------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
                              ERR  L+R+           +  + + +  +     + Y  
Sbjct: 144 RSVVLPQGKFSEFLKLTGRERRNMLERIFG---------LEQYGKNIVEKINAERKKYDA 194

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLI-MEYVQKENFPHIKLSLTGFLDGKFDQ 238
                 +E Q+            E+   L  L+  E   K+    +             Q
Sbjct: 195 KRMD--LEGQLKSYEGVNESYYKEVSEKLHLLLVEEKALKKEIEDLDKEYQQSKKIWELQ 252

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLI 266
              A  +     L + R      R+T I
Sbjct: 253 GEMASYKGMEVLLREKRTEIEEKRKTFI 280


>gi|300122972|emb|CBK23979.2| unnamed protein product [Blastocystis hominis]
          Length = 1187

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F +YA       F     + +G NG GK+N   AI F
Sbjct: 1  MHIKKVIIEGFGSYAKAENPELFGPGINVILGVNGSGKSNFFRAIQF 47



 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 12/91 (13%)

Query: 273  LIVDYCDKAIT-IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
            L V +     +  A  S G++ V+ + +  A           AP  L DE+ A LD + R
Sbjct: 1069 LRVRFGGGEESSKAQLSGGQKAVIALSLIFA-----IQRADPAPFYLFDEVDAELDTNYR 1123

Query: 332  NALFRIV------TDIGSQIFMTGTDKSVFD 356
              L R++           QIF T     + D
Sbjct: 1124 VELARLMQRQAEQQGAQCQIFCTTFKPELLD 1154


>gi|218883921|ref|YP_002428303.1| DNA double-strand break repair rad50 ATPase [Desulfurococcus
          kamchatkensis 1221n]
 gi|218765537|gb|ACL10936.1| DNA double-strand break repair rad50 ATPase [Desulfurococcus
          kamchatkensis 1221n]
          Length = 818

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPG 53
          ++I  L +   R++ +  +VF     T+  G+ G GKT+IL +IS    G
Sbjct: 1  MRIYGLMLENIRSFKNEYIVFPKKGVTVIHGETGSGKTSILMSISAALFG 50


>gi|237843275|ref|XP_002370935.1| SMC protein, putative [Toxoplasma gondii ME49]
 gi|211968599|gb|EEB03795.1| SMC protein, putative [Toxoplasma gondii ME49]
 gi|221481866|gb|EEE20236.1| SMC protein, putative [Toxoplasma gondii GT1]
 gi|221502364|gb|EEE28097.1| SMC protein, putative [Toxoplasma gondii VEG]
          Length = 1418

 Score = 43.4 bits (101), Expect = 0.064,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 83/267 (31%), Gaps = 30/267 (11%)

Query: 6   KIKFLNISEFRNYA-SLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGF---RRAS 60
           ++  L I  +  Y   + + F     +    NG GK+++L A++F L         R + 
Sbjct: 56  QLLQLRIENWMAYTGPVEVNFLTGINLLAAPNGAGKSSLLCAMAFGLGYDVSHISRRGSR 115

Query: 61  YADVTRIGSPSFFSTFARVEGMEGL-ADISIKLETRDDRSVRCLQINDVV--IRVVDELN 117
             D  + G  +   +        G        L    +++V    +N     +    E  
Sbjct: 116 LRDFIKNGHSACSVSCVLAGRKAGEFVTTRRDLRLSGEQTVSTFYVNGRECGVEARMEFQ 175

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
           + LR+       D +   +  ER    +      +      +   +  +      L +  
Sbjct: 176 RRLRLQV-----DNLICFMPQER--VPEFATMRPEDLFTATLRAIDFDLHEAYVGLRDWE 228

Query: 178 FDSSWCSSIEAQ----MAELGVKINIARVEM--INALSSLIMEYVQKENFPHIKLSLTGF 231
                  ++  Q    ++ L   +   R+E   +  L       +  E            
Sbjct: 229 AKREETENLLIQGRADLSALDRAVEKLRLEHEELKRLQGCENRRILCEGK---------I 279

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMD 258
           L+G+       L+E+   +    R+++
Sbjct: 280 LEGRVSAVEQRLEEQERARKETERQVE 306


>gi|315426401|dbj|BAJ48040.1| exonuclease SbcCD, C subunit [Candidatus Caldiarchaeum
           subterraneum]
 gi|315426413|dbj|BAJ48051.1| exonuclease SbcCD, C subunit [Candidatus Caldiarchaeum
           subterraneum]
          Length = 767

 Score = 43.4 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 10/105 (9%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR------ 57
           +K+  L    F+       L F    T+  G N  GK++IL+AI +    R  R      
Sbjct: 2   VKLLSLYAYNFKKLRFDEPLRFSDGVTLISGLNEAGKSSILDAILYALYARVIRPPPEKG 61

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           +    D+   G+         +E   G     +  E +     R 
Sbjct: 62  KTRNEDIIAYGAS---KATVVLEFAVGDKRYRVSREIKRSGKPRA 103


>gi|300704239|ref|YP_003745842.1| chromosome segregation protein smc [Ralstonia solanacearum
           CFBP2957]
 gi|299071903|emb|CBJ43232.1| Chromosome segregation protein SMC [Ralstonia solanacearum
           CFBP2957]
          Length = 1171

 Score = 43.4 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 18/127 (14%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
           +++  + ++ F+++          Q    VG NG GK+NI++A+   L   R    R  S
Sbjct: 1   MRLSSIKLAGFKSFVDPTNFHVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRAAELRGES 60

Query: 61  YADVTRIGS--------PSFFSTFARVEGM-----EGLADISIKLETRDDRSVRCLQIND 107
             DV   GS         S    F   EG         A+I++K     D +     IN+
Sbjct: 61  MQDVIFNGSTQRKPAGRASVELVFDNAEGRAAGQWSQYAEIAVKRVLSRDGTS-SYFINN 119

Query: 108 VVIRVVD 114
             +R  D
Sbjct: 120 QAVRRRD 126



 Score = 36.0 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 12/166 (7%)

Query: 188  AQMAELGVKINIARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKE 245
            A + EL       R   ++A S+ +++ +   ++    I       L G FDQ      E
Sbjct: 973  AALDELAAA--RERKGFLDAQSADLLDAITTLEDAIRKIDQETRALLQGTFDQVNYHFGE 1030

Query: 246  EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305
             +      G+    M+   ++      +      K  TI   S GE+ +  + +  A  +
Sbjct: 1031 LFPTLFGGGQAKLIMTGEEILDAGVQVMAQPPGKKNSTIHLLSGGEKALTAIALVFAMFQ 1090

Query: 306  LISNTTGFAPILLLDEISAHLDEDKRNA---LFRIVTDIGSQIFMT 348
            L       AP  LLDE+ A LD+        + + ++D    +F++
Sbjct: 1091 L-----NPAPFCLLDEVDAPLDDANTERYANMVKRMSDKTQFVFIS 1131


>gi|229019231|ref|ZP_04176061.1| ABC transporter, ATP-binding protein [Bacillus cereus AH1273]
 gi|229025477|ref|ZP_04181887.1| ABC transporter, ATP-binding protein [Bacillus cereus AH1272]
 gi|228735759|gb|EEL86344.1| ABC transporter, ATP-binding protein [Bacillus cereus AH1272]
 gi|228742064|gb|EEL92234.1| ABC transporter, ATP-binding protein [Bacillus cereus AH1273]
          Length = 250

 Score = 43.4 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 34 QSLAFHPNVTFIIGENGTGKSTLLEAIAIALGFNAEGGTKNFR 76


>gi|15892152|ref|NP_359866.1| DNA repair protein RecN [Rickettsia conorii str. Malish 7]
 gi|20139553|sp|Q92J40|RECN_RICCN RecName: Full=DNA repair protein recN; AltName:
          Full=Recombination protein N
 gi|15619282|gb|AAL02767.1| DNA repair protein RecN [Rickettsia conorii str. Malish 7]
          Length = 545

 Score = 43.4 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
           L++  F     L + F+    +  G+ G GK+ +L+AI F    +     +  ++ + G
Sbjct: 4  SLSVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILFCLGYK-----TSNNIIKRG 58

Query: 69 SPSFFS 74
                
Sbjct: 59 KDYAVV 64


>gi|27379819|ref|NP_771348.1| ATP-binding protein [Bradyrhizobium japonicum USDA 110]
 gi|27352972|dbj|BAC49973.1| bll4708 [Bradyrhizobium japonicum USDA 110]
          Length = 255

 Score = 43.4 bits (101), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 19 ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
              L FDA  TI VG+NG GK+ ILE I+ L+
Sbjct: 41 DDFELSFDAAITIIVGENGTGKSTILEGIAALA 73


>gi|325089375|gb|EGC42685.1| condensin subunit [Ajellomyces capsulatus H88]
          Length = 315

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIVEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSKSPIGFEEYASISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|304405064|ref|ZP_07386724.1| SMC domain protein [Paenibacillus curdlanolyticus YK9]
 gi|304345943|gb|EFM11777.1| SMC domain protein [Paenibacillus curdlanolyticus YK9]
          Length = 234

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 13/57 (22%)

Query: 5  IKIKFLNISE--------FRNYASL----RLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + ++ L I          F N   L     L F    T  VG+NG GK+ +LEAI++
Sbjct: 1  MFLRSLEIINRPDANSYPF-NIPVLQSLKSLTFTKNVTCLVGENGSGKSTLLEAIAY 56


>gi|295109851|emb|CBL23804.1| ATPase components of ABC transporters with duplicated ATPase
           domains [Ruminococcus obeum A2-162]
          Length = 609

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           +   D    IAH S G++K V +   L              +L+LDE + HLD +  + L
Sbjct: 109 LGIEDHEEEIAHLSGGQKKRVALAAVL---------VNPTDVLILDEPTNHLDNEMASWL 159

Query: 335 FRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
              +      + M   D+   D +    K + IS+ +   
Sbjct: 160 EDYLNRFKGVVIMVTHDRYFLDRVTN--KILEISHGKLYS 197


>gi|226330756|ref|ZP_03806274.1| hypothetical protein PROPEN_04676 [Proteus penneri ATCC 35198]
 gi|225201551|gb|EEG83905.1| hypothetical protein PROPEN_04676 [Proteus penneri ATCC 35198]
          Length = 508

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          + ++ + I  FR    L L  D   T+ VG+N  GK+++L+A++ 
Sbjct: 1  MYLERVEIVGFRGLNRLSLPLDMN-TVLVGENAWGKSSLLDALTL 44


>gi|226322041|ref|ZP_03797566.1| p115 protein [Borrelia burgdorferi Bol26]
 gi|226232631|gb|EEH31385.1| p115 protein [Borrelia burgdorferi Bol26]
          Length = 815

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++            +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIVLLGFKSFLNRQEFEIGENLSFIVGPNGCGKSNLIDAVRFCMGEDNLKFLRVED 60

Query: 61 YADVT 65
           +D+ 
Sbjct: 61 ISDLI 65


>gi|218249696|ref|YP_002374578.1| P115 protein [Borrelia burgdorferi ZS7]
 gi|218164884|gb|ACK74945.1| P115 protein [Borrelia burgdorferi ZS7]
          Length = 815

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++            +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIVLLGFKSFLNRQEFEIGENLSFIVGPNGCGKSNLIDAVRFCMGEDNLKFLRVED 60

Query: 61 YADVT 65
           +D+ 
Sbjct: 61 ISDLI 65


>gi|241662935|ref|YP_002981295.1| chromosome segregation protein SMC [Ralstonia pickettii 12D]
 gi|240864962|gb|ACS62623.1| chromosome segregation protein SMC [Ralstonia pickettii 12D]
          Length = 1171

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
          +++  + ++ F+++          Q    VG NG GK+NI++A+   L   R    R  S
Sbjct: 1  MRLSSIKLAGFKSFVDPTNFHVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRAAELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|324327927|gb|ADY23187.1| ABC transporter ATP-binding protein [Bacillus thuringiensis
          serovar finitimus YBT-020]
          Length = 250

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 34 QSLAFHPNVTFIIGENGTGKSTLLEAIAIALGFNAEGGTKNFR 76


>gi|315644963|ref|ZP_07898091.1| AAA ATPase [Paenibacillus vortex V453]
 gi|315279674|gb|EFU42976.1| AAA ATPase [Paenibacillus vortex V453]
          Length = 184

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAI 47
          L F  + T  VG+NG+GK+ +LEAI
Sbjct: 39 LDFHPKVTYIVGENGMGKSTLLEAI 63


>gi|227876700|ref|ZP_03994809.1| abortive infection protein [Mobiluncus mulieris ATCC 35243]
 gi|227842597|gb|EEJ52797.1| abortive infection protein [Mobiluncus mulieris ATCC 35243]
          Length = 458

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 19/66 (28%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQ------------------HTIFVGDNGVGKTNILE 45
          ++I F ++  FR+   +  + F                      TI +G N  GK+N+++
Sbjct: 1  MRILFFSVKNFRSVDETQTIDFVKGRVGGSPLVKGGWEPHVRPVTILMGPNAAGKSNVID 60

Query: 46 AISFLS 51
          A+ +++
Sbjct: 61 AMGYVA 66


>gi|47228744|emb|CAG07476.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1034

 Score = 43.4 bits (101), Expect = 0.066,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 6/105 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF---RRASYAD 63
           I  + +  F  Y    +       + VG NG GK++I+ AI     G+     R      
Sbjct: 5   ILRITMKNFLTYDYTEVYPGPNLNMIVGANGTGKSSIVCAICLGLAGKTAVLGRGDKVGL 64

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
             + G          +E  +   ++ I  E   + +     IN  
Sbjct: 65  YVKRGCNKG---SVEIELYKHGGNVVIMREIHVENNQSLWMINGK 106


>gi|319936199|ref|ZP_08010619.1| hypothetical protein HMPREF9488_01451 [Coprobacillus sp. 29_1]
 gi|319808773|gb|EFW05306.1| hypothetical protein HMPREF9488_01451 [Coprobacillus sp. 29_1]
          Length = 1024

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 94/279 (33%), Gaps = 35/279 (12%)

Query: 5   IKIKFLNISEFRNYASLR-LVFDA----QHTIFVGDNGVGKTNILEAISFLSPG---RGF 56
           ++I  L ++ F  Y S   + F+        +  G  G GKT I +A++F   G      
Sbjct: 1   MRIISLTMNAFMTYKSQTTIDFEDMIENGLYLISGPTGAGKTTIFDAMTFALYGVASGSH 60

Query: 57  RRASY--ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR------------- 101
           R  SY  +D       ++      + G       S        +S +             
Sbjct: 61  RNQSYFRSDFADAKDETYVEMVFELHGKIYKVKRSPTYTRPGYKSAKMANAYLSYNNEMI 120

Query: 102 --CLQINDVVIRVVD-ELNKHLRISWLV-PSMDRIFSGLSMERRRFLDRMVFAIDPRHRR 157
               ++N  + +++  ++++  +I  +      ++    S ER + L  +       H  
Sbjct: 121 EGVKEVNQKINQLLGVDVHQFKQIVMIAQGEFTKLIYASSEEREKVLRHIF------HSE 174

Query: 158 RMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ 217
            ++ FE L++   R+  E Y  SS       Q+     +         +   S I   ++
Sbjct: 175 SLVVFENLLKEETRIYKEKYLLSSQQLLSRFQLLNFSKEFMENHTAGFHP--SYIEHAIE 232

Query: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
           +    H +L +           +  L + Y +K    + 
Sbjct: 233 QNKLLHNQLQIAKSQYEALQNQYDQLSQTYYRKEKQNQD 271


>gi|309782144|ref|ZP_07676874.1| RecF/RecN/SMC N domain-containing protein [Ralstonia sp.
          5_7_47FAA]
 gi|308919210|gb|EFP64877.1| RecF/RecN/SMC N domain-containing protein [Ralstonia sp.
          5_7_47FAA]
          Length = 1171

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
          +++  + ++ F+++          Q    VG NG GK+NI++A+   L   R    R  S
Sbjct: 1  MRLSSIKLAGFKSFVDPTNFHVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRAAELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|291613319|ref|YP_003523476.1| AAA ATPase [Sideroxydans lithotrophicus ES-1]
 gi|291583431|gb|ADE11089.1| AAA ATPase [Sideroxydans lithotrophicus ES-1]
          Length = 582

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 3  NRIKIKFLNISE--FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
           RI++  L      FR   SL++    + T+  G NG+GK+ IL  I+  S       R 
Sbjct: 2  PRIRVTSLTFDGCKFRRLKSLKIPIAERITVIAGHNGIGKSTILGLIAHQSGLTSRVLRG 61

Query: 59 ASY 61
             
Sbjct: 62 HKL 64


>gi|239816979|ref|YP_002945889.1| urea ABC transporter ATP-binding protein UrtD [Variovorax paradoxus
           S110]
 gi|239803556|gb|ACS20623.1| urea ABC transporter, ATP-binding protein UrtD [Variovorax
           paradoxus S110]
          Length = 292

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 13/151 (8%)

Query: 9   FLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAIS----------FLSPGRGFR 57
            ++   F+    L L          +G NG GKT +++ I+          F        
Sbjct: 58  SVSFDGFKAINKLSLDIAPGELRCIIGPNGAGKTTMMDIITGKTRPDEGTVFFGSTIDLL 117

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           R   AD+ ++G    F      E +    ++ + L+T   + VR   +  +     D L 
Sbjct: 118 RHREADIAQLGIGRKFQKPTVFEHLTVFENLELALKTN--KGVRASMLFRLDSAQSDRLA 175

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
           + L+   L  S+ R+   LS  ++++L+  +
Sbjct: 176 EVLQTIHLADSVSRLAGNLSHGQKQWLEIGM 206


>gi|213966665|ref|ZP_03394816.1| DNA repair protein RecN [Pseudomonas syringae pv. tomato T1]
 gi|301383175|ref|ZP_07231593.1| DNA repair protein RecN [Pseudomonas syringae pv. tomato Max13]
 gi|302063390|ref|ZP_07254931.1| DNA repair protein RecN [Pseudomonas syringae pv. tomato K40]
 gi|302133763|ref|ZP_07259753.1| DNA repair protein RecN [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213928515|gb|EEB62059.1| DNA repair protein RecN [Pseudomonas syringae pv. tomato T1]
          Length = 557

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 68/218 (31%), Gaps = 33/218 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +     L L  D   ++  G+ G GK+ +L+A+      R     + + V R
Sbjct: 2   LVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDR-----ADSGVVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
            G+                  A ++  +   D    L        R    IN       D
Sbjct: 57  PGADKADILATFDLGDIPEAEAWLKERDLDNDGPCILRRVITAEGRSRSYINGSPCPQGD 116

Query: 115 --ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
              L + L           +    +   RR LD    A D      +     L   R   
Sbjct: 117 LKALGELLIDIHSQHEHQSLLK--TDTHRRLLDEYAGATD------LARQVHLAAQR--- 165

Query: 173 LTEGYFDSSWCS-SIEAQMAELGVKINIARVEMINALS 209
             +   +    S S + Q A    ++   ++E + +LS
Sbjct: 166 WRQTRQELERLSNSGDEQRARH--QLLSYQLEELESLS 201


>gi|209518547|ref|ZP_03267367.1| SMC domain protein [Burkholderia sp. H160]
 gi|209500997|gb|EEA01033.1| SMC domain protein [Burkholderia sp. H160]
          Length = 250

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 16 RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          R++ S  L    + T  +G+NG GK+  LEAI+ 
Sbjct: 31 RSFES--LDPHPKVTFLIGENGSGKSTFLEAIAV 62


>gi|195148078|ref|XP_002015001.1| GL18652 [Drosophila persimilis]
 gi|194106954|gb|EDW28997.1| GL18652 [Drosophila persimilis]
          Length = 405

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 12/117 (10%)

Query: 17  NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYADVTRIGSPSFF 73
            + +  + F       VG NG GK+  + A++    G      R A+   + + G  +  
Sbjct: 2   CHENFTVEFGPNANFLVGKNGSGKSATITALTVGLGGTARASSRAANTPKLIKNGERAAK 61

Query: 74  STFA-------RVEGMEGLADISIKLETRDDRSVRCLQ--INDVVIRVVDELNKHLR 121
                      R +       +++    R   S   L+     +V R +D++ + LR
Sbjct: 62  IEITLCNIGWNRFDEEHVGPHLTVVRHIRQSSSTYELKDERGRIVPRKLDDVKRLLR 118


>gi|162148969|ref|YP_001603430.1| DNA repair protein recN [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787546|emb|CAP57142.1| DNA repair protein recN [Gluconacetobacter diazotrophicus PAl 5]
          Length = 571

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L L F    T+  G+ G GK+ +L++   L    G R +  A + R
Sbjct: 2  LTHLSIRDVVLIERLDLPFSPGLTVLTGETGAGKSILLDS---LGLTLGERAS--AGLVR 56

Query: 67 IGSPSF 72
           G+   
Sbjct: 57 AGAEQA 62


>gi|187928359|ref|YP_001898846.1| chromosome segregation protein SMC [Ralstonia pickettii 12J]
 gi|187725249|gb|ACD26414.1| chromosome segregation protein SMC [Ralstonia pickettii 12J]
          Length = 1171

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
          +++  + ++ F+++          Q    VG NG GK+NI++A+   L   R    R  S
Sbjct: 1  MRLSSIKLAGFKSFVDPTNFHVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRAAELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|110597050|ref|ZP_01385339.1| DNA repair protein RecN [Chlorobium ferrooxidans DSM 13031]
 gi|110341241|gb|EAT59706.1| DNA repair protein RecN [Chlorobium ferrooxidans DSM 13031]
          Length = 571

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L I  F     L + F    TI  G+ G GK+ ++ A++ +    G R +S   + R
Sbjct: 2  LFSLYIRNFALIQELTVEFRPGLTIITGETGAGKSILMGALNIVL---GERASSD--LVR 56

Query: 67 IGSPSFFSTFARVEGMEGLADI 88
           G+          E      D 
Sbjct: 57 SGANKAVIEAVLKEAGSEKIDT 78


>gi|108799033|ref|YP_639230.1| ABC transporter related [Mycobacterium sp. MCS]
 gi|119868148|ref|YP_938100.1| ABC transporter related [Mycobacterium sp. KMS]
 gi|108769452|gb|ABG08174.1| ABC transporter related protein [Mycobacterium sp. MCS]
 gi|119694237|gb|ABL91310.1| ABC transporter related protein [Mycobacterium sp. KMS]
          Length = 247

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 19/119 (15%)

Query: 257 MDSMSRRTLIGPHRSDLIVDY----------CDKAITIAHGSTGEQKVVLVGIFLAHARL 306
            D        G    +L               +   +  H S G+++   +   LA    
Sbjct: 100 QDVAFGPANFGVRGDELAARVRRALATVSLTAEADRSPTHLSAGQRRRAALATVLA---- 155

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
                    IL+LDE SA+LD   R  L   +  I + + +   D      L E A  +
Sbjct: 156 -----CEPEILVLDEPSANLDPVARRELAETLRAIRATMVIVTHDLPYAAQLCERAVIV 209


>gi|158320636|ref|YP_001513143.1| DNA repair protein RecN [Alkaliphilus oremlandii OhILAs]
 gi|158140835|gb|ABW19147.1| DNA repair protein RecN [Alkaliphilus oremlandii OhILAs]
          Length = 570

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I +F     L + F     I  G+ G GK+ I++A++     R     +     R
Sbjct: 2   LLELEIKDFALIDQLNISFKEGLNILSGETGAGKSIIIDAVNMAIGER-----ADRSFIR 56

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
            G           V+ +E +  +  +    D      L I
Sbjct: 57  SGCDKASVQAIFHVKNIEDMNQVLEEYGVNDGEGYDTLII 96


>gi|42783122|ref|NP_980369.1| hypothetical protein BCE_4075 [Bacillus cereus ATCC 10987]
 gi|42739050|gb|AAS42977.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 241

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 34 QSLAFHPNVTFIIGENGTGKSTLLEAIAIALGFNAEGGTKNFR 76


>gi|38233621|ref|NP_939388.1| ATP-binding protein [Corynebacterium diphtheriae NCTC 13129]
 gi|38199881|emb|CAE49547.1| Conserved hypothetical ATP-binding protein [Corynebacterium
          diphtheriae]
          Length = 854

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI 47
          ++I+ L I   R    L L         +  G+N  GK+ I+EAI
Sbjct: 1  MRIRSLEIEHMRAITHLVLKDLPSNGVIVISGENERGKSTIMEAI 45


>gi|330963958|gb|EGH64218.1| DNA repair protein RecN [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 557

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 68/218 (31%), Gaps = 33/218 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +     L L  D   ++  G+ G GK+ +L+A+      R     + + V R
Sbjct: 2   LVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDR-----ADSGVVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
            G+                  A ++  +   D    L        R    IN       D
Sbjct: 57  PGADKADILATFDLGDIPEAEAWLKERDLDNDGPCILRRVITAEGRSRSYINGSPCPQGD 116

Query: 115 --ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
              L + L           +    +   RR LD    A D      +     L   R   
Sbjct: 117 LKALGELLIDIHSQHEHQSLLK--TDTHRRLLDEYTGATD------LARQVHLAAQR--- 165

Query: 173 LTEGYFDSSWCS-SIEAQMAELGVKINIARVEMINALS 209
             +   +    S S + Q A    ++   ++E + +LS
Sbjct: 166 WRQTRQELERLSNSGDEQRARH--QLLSYQLEELESLS 201


>gi|301123681|ref|XP_002909567.1| DNA repair protein RAD50, putative [Phytophthora infestans T30-4]
 gi|262100329|gb|EEY58381.1| DNA repair protein RAD50, putative [Phytophthora infestans T30-4]
          Length = 1280

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 43/246 (17%), Positives = 79/246 (32%), Gaps = 47/246 (19%)

Query: 7   IKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRAS 60
           I+ L+I   R++       + F    TI +GDNG GKT ++E +     G    G R   
Sbjct: 4   IEKLSIRGIRSFSPNREEIIEFYHPLTILLGDNGCGKTTVIECLKLACTGGLPPGARSGQ 63

Query: 61  YADVTRIGSPSF-----FSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVVIRVVD 114
              +      +       S   R     G    +    + R  +     +  D VI+V +
Sbjct: 64  S--LIHDPKIAGTNEVKASIRLRFRNQAGKVMLVHRTYQVRQTKKTISFKALDGVIQVAN 121

Query: 115 ELNKHLRISW-------LVPSMDRI-------------------FSGLSMERRRFLDRMV 148
           EL + + ++         +P M  +                       +  ++RF +   
Sbjct: 122 ELGEKVSLNHKCGELDQHIPDMLGVSKAILESVIFCHQEDSNWPLREGAELKKRFDNIFE 181

Query: 149 FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINAL 208
            A   R+ + +    +L + R   L            + A M +   +I      M   L
Sbjct: 182 SA---RYTKALEAIRKLKKAR---LDNAKDYKRDLDVLTAHM-KTAEEIRDKIERMQERL 234

Query: 209 SSLIME 214
             +  E
Sbjct: 235 QEVAEE 240


>gi|209545277|ref|YP_002277506.1| DNA repair protein RecN [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532954|gb|ACI52891.1| DNA repair protein RecN [Gluconacetobacter diazotrophicus PAl 5]
          Length = 570

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L L F    T+  G+ G GK+ +L++   L    G R +  A + R
Sbjct: 2  LTHLSIRDVVLIERLDLPFSPGLTVLTGETGAGKSILLDS---LGLTLGERAS--AGLVR 56

Query: 67 IGSPSF 72
           G+   
Sbjct: 57 AGAEQA 62


>gi|223889224|ref|ZP_03623813.1| p115 protein [Borrelia burgdorferi 64b]
 gi|223885473|gb|EEF56574.1| p115 protein [Borrelia burgdorferi 64b]
          Length = 815

 Score = 43.4 bits (101), Expect = 0.067,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++            +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIVLLGFKSFLNRQEFEIGENLSFIVGPNGCGKSNLIDAVRFCMGEDNLKFLRVED 60

Query: 61 YADVT 65
           +D+ 
Sbjct: 61 ISDLI 65


>gi|296817741|ref|XP_002849207.1| structural maintenance of chromosomes protein 2 [Arthroderma otae
           CBS 113480]
 gi|238839660|gb|EEQ29322.1| structural maintenance of chromosomes protein 2 [Arthroderma otae
           CBS 113480]
          Length = 1179

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIIEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSISPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|260817162|ref|XP_002603456.1| hypothetical protein BRAFLDRAFT_80430 [Branchiostoma floridae]
 gi|229288775|gb|EEN59467.1| hypothetical protein BRAFLDRAFT_80430 [Branchiostoma floridae]
          Length = 1155

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 3  NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
           R+ I  +    F++YA  ++   F    +  VG NG GK+N+++A+ F+   R
Sbjct: 8  PRLIITHIVNENFKSYAGKKILGPFHKSFSCIVGPNGSGKSNVIDAMLFVFGYR 61


>gi|158425379|ref|YP_001526671.1| ABC transporter ATPase subunit [Azorhizobium caulinodans ORS 571]
 gi|158332268|dbj|BAF89753.1| ABC transporter ATPase subunit [Azorhizobium caulinodans ORS 571]
          Length = 287

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G++++V +   LA             IL++DE  A LD   R AL   +  +  Q+ M
Sbjct: 187 SEGQKQLVCILAALA---------PDPAILVMDEPLASLDLANRRALLARIERLPQQVLM 237

Query: 348 TGTDKSVFDSLN 359
              D  +    +
Sbjct: 238 ASHDLDLIAGFD 249


>gi|119872979|ref|YP_930986.1| hypothetical protein Pisl_1487 [Pyrobaculum islandicum DSM 4184]
 gi|119674387|gb|ABL88643.1| hypothetical protein Pisl_1487 [Pyrobaculum islandicum DSM 4184]
          Length = 343

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           L +  +R     R+      T+F+G N  GK+++  A  FL+
Sbjct: 4  ELYVKNWRCIEEARVSLRP-VTVFIGGNSTGKSSLAYAAYFLA 45


>gi|94310368|ref|YP_583578.1| condensin subunit Smc [Cupriavidus metallidurans CH34]
 gi|93354220|gb|ABF08309.1| chromosome segregation ATPase [Cupriavidus metallidurans CH34]
          Length = 1171

 Score = 43.4 bits (101), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + ++ F+++          Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1  MRLSSIKLAGFKSFVDPTNFQVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRASELRGES 60

Query: 61 YADVTRIGSPS 71
            DV   GS +
Sbjct: 61 MQDVIFNGSTA 71



 Score = 36.8 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 10/155 (6%)

Query: 199  IARVEMINALSSLIMEYVQ--KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK 256
              R   ++A ++ + + +   ++    I       L G FDQ      E +      G+ 
Sbjct: 982  RERKTFLDAQTADLTDAINTLEDAIAKIDQETRALLQGTFDQVNHHFGELFPSLFGGGQA 1041

Query: 257  MDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPI 316
               M+   ++      +      K  TI   S GE+ +  + +  A  +L       AP 
Sbjct: 1042 RLIMTGEEILDAGVQVMAQPPGKKNSTIHLLSGGEKALTAIALVFAMFQL-----NPAPF 1096

Query: 317  LLLDEISAHLDEDKRNALFRIVTDI--GSQ-IFMT 348
             LLDE+ A LD+        +V  +   +Q +F++
Sbjct: 1097 CLLDEVDAPLDDANTERYANMVARMSDKTQFVFIS 1131


>gi|330877250|gb|EGH11399.1| DNA repair protein RecN [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 557

 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 68/218 (31%), Gaps = 33/218 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +     L L  D   ++  G+ G GK+ +L+A+      R     + + V R
Sbjct: 2   LVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDR-----ADSGVVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
            G+                  A ++  +   D    L        R    IN       D
Sbjct: 57  PGADKADILATFDLGDIPEAQAWLKERDLDNDGPCILRRVITAEGRSRSYINGSPCPQGD 116

Query: 115 --ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
              L + L           +    +   RR LD    A D      +     L   R   
Sbjct: 117 LKALGELLIDIHSQHEHQSLLK--TDTHRRLLDEYAGATD------LARQVHLAAQR--- 165

Query: 173 LTEGYFDSSWCS-SIEAQMAELGVKINIARVEMINALS 209
             +   +    S S + Q A    ++   ++E + +LS
Sbjct: 166 WRQTRQELERLSNSGDEQRARH--QLLSYQLEELESLS 201


>gi|300694594|ref|YP_003750567.1| p-loop containing nucleoside triphosphate hydrolase domain
           [Ralstonia solanacearum PSI07]
 gi|299076631|emb|CBJ35969.1| conserved hypothethical protein, P-loop containing nucleoside
           triphosphate hydrolase domain [Ralstonia solanacearum
           PSI07]
          Length = 663

 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 31/177 (17%)

Query: 204 MINALSSLIMEYVQKENFPHIKL--SLTGFLDGKFDQSFCALKEEY---AKKLFDGRKMD 258
            I AL  ++ E+      P + L  S +G +D    Q      ++     + L D R + 
Sbjct: 156 FIQALRDVVSEFHSNRTNPLLTLLKSKSGQIDPAQFQPIVERAQQLNREIENLNDVRTVR 215

Query: 259 SMSRRTLIG-----------------PHRSDLIV---------DYCDKAITIAHGSTGEQ 292
           S    T+ G                 P  +DL+             D   +I   S G  
Sbjct: 216 SDIEETIYGAAGQTYSPSLLAIKSDLPDEADLLFQSLKLFVGEFDGDHEGSIQELSLGGA 275

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG 349
            ++ + + L   +   +    A  LL++E  AHL    +  LF  +   G+QI  + 
Sbjct: 276 NLIFLTLKLLEFKYQHDRQAIANFLLIEEPEAHLHTHVQKTLFDRIGYTGAQIIYST 332


>gi|258676974|ref|YP_697474.2| hypothetical protein CPR_0137 [Clostridium perfringens SM101]
 gi|255926555|gb|ABG87633.2| hypothetical protein CPR_0137 [Clostridium perfringens SM101]
          Length = 666

 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 5  IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L I  ++++     +         +G N  GK+ I++AI   
Sbjct: 1  MKLSKLRIKNYKSFKDSGTIEIKGNIFALIGQNNAGKSAIMDAIQVF 47


>gi|254563623|ref|YP_003070718.1| hypothetical protein METDI5293 [Methylobacterium extorquens DM4]
 gi|254270901|emb|CAX26906.1| conserved hypothetical protein [Methylobacterium extorquens DM4]
          Length = 385

 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
           ++ +  + +R+  ++R       ++FVG NG GKTN+  A+  L     
Sbjct: 3  AVREIEAAGYRSLKTIRFPVGP-LSVFVGGNGTGKTNLYRALGLLQTAAS 51


>gi|225552301|ref|ZP_03773241.1| p115 protein [Borrelia sp. SV1]
 gi|225371299|gb|EEH00729.1| p115 protein [Borrelia sp. SV1]
          Length = 815

 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++            +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIVLLGFKSFLNRQEFEIGENLSFIVGPNGCGKSNLIDAVRFCMGEDNLKFLRVED 60

Query: 61 YADVT 65
           +D+ 
Sbjct: 61 ISDLI 65


>gi|225549219|ref|ZP_03770192.1| p115 protein [Borrelia burgdorferi 94a]
 gi|225370077|gb|EEG99517.1| p115 protein [Borrelia burgdorferi 94a]
          Length = 815

 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++            +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIVLLGFKSFLNRQEFEIGENLSFIVGPNGCGKSNLIDAVRFCMGEDNLKFLRVED 60

Query: 61 YADVT 65
           +D+ 
Sbjct: 61 ISDLI 65


>gi|197250476|ref|YP_002147569.1| hypothetical protein SeAg_B2778 [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
 gi|197214179|gb|ACH51576.1| hypothetical protein SeAg_B2778 [Salmonella enterica subsp.
          enterica serovar Agona str. SL483]
          Length = 490

 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +K + +   R +    + F    T  +G NG GK+ IL A++ 
Sbjct: 24 VKRITLKNVRGFDEEIVEFKTPVTALIGTNGGGKSTILGAVAL 66


>gi|148548173|ref|YP_001268275.1| DNA repair ATPase-like protein [Pseudomonas putida F1]
 gi|148512231|gb|ABQ79091.1| ATPase involved in DNA repair-like protein [Pseudomonas putida F1]
          Length = 929

 Score = 43.0 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 75/219 (34%), Gaps = 37/219 (16%)

Query: 3   NRIKIKFL--NISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           N + IKFL   I  FR     L +  DA  T+    NG GK+ I  A+ +L  G+     
Sbjct: 2   NNLPIKFLAVTIQNFRGIPDELVVPLDAPLTVIHAANGTGKSTICYALEWLVTGK----- 56

Query: 60  SYADV------TRIG-SPSFFSTFARVEGMEG-LADISIKLETRDDRSVRCLQINDV--- 108
              D+       + G   +  S    ++G    L   +  L    D   +  +IND    
Sbjct: 57  -VDDLNGAALECQWGKGATTVSANCLIDGKLHVLTRTNTSLWITPD-GEKKKKINDEFLL 114

Query: 109 ------------VIRVVDELNKHLRIS--WLVPSMDRIFSGLSMERRR--FLDRMVFAID 152
                        I +       LR S      S+  +      + R+  F D + F   
Sbjct: 115 GMLTPTSVSGKSTIALRKAKRGWLRNSRWLYSNSLALLIDNNKADERQQIFADILGFGHL 174

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMA 191
               R + D+ + +     L  +     +   +++A +A
Sbjct: 175 TSTLRDLRDYRKALPNTKGLADKVSGVKAEIETLKASLA 213



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           S G+++ + + ++LA                LDE  AHLD+  R A+  I  
Sbjct: 812 SQGQRQDLALSLYLA------RARNTGGSFFLDEPIAHLDDLNRVAMLDIFR 857


>gi|317498979|ref|ZP_07957261.1| DNA repair protein RecN [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893728|gb|EFV15928.1| DNA repair protein RecN [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 560

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 76/223 (34%), Gaps = 33/223 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L + +      + + FD    I  G+ G GK+ ++ +I   + G+      
Sbjct: 1   MLQNLHVKNLALID-----EVEITFDEHLNILTGETGAGKSVLIGSIE-SALGK----KI 50

Query: 61  YADVTRIGS-PSFFSTFARVEGMEGLADIS-IKLETRDDRSVRCLQINDVVIRVVDELNK 118
             D+ R G+  +       +E  + + +I  + LE  D +      IN+           
Sbjct: 51  SKDMIRPGAKEAVIELLFWIEDQKLIKEIEALDLEVEDGQIFIKRVINEK---------- 100

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
             R    +       + L    RR  D         H+  + +   L    + L     +
Sbjct: 101 --RSINKINDSTVTLNTLREVSRRLFDLHGQQ---EHQVLLKEKNHLSMMDHFLPENARY 155

Query: 179 DSSWCSSIEAQMAELGVKI------NIARVEMINALSSLIMEY 215
               C ++  +  E+  KI      +  R+  ++ L   I E 
Sbjct: 156 SLEQCKNLAGEYHEISTKIKEISIDDQQRLREMDFLKHEISEI 198


>gi|229162961|ref|ZP_04290917.1| ABC transporter, ATP-binding protein [Bacillus cereus R309803]
 gi|228620367|gb|EEK77237.1| ABC transporter, ATP-binding protein [Bacillus cereus R309803]
          Length = 250

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 34 QSLAFHPNVTFIIGENGTGKSTLLEAIAIALGFNAEGGTKNFR 76


>gi|291287801|ref|YP_003504617.1| DNA repair protein RecN [Denitrovibrio acetiphilus DSM 12809]
 gi|290884961|gb|ADD68661.1| DNA repair protein RecN [Denitrovibrio acetiphilus DSM 12809]
          Length = 550

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 56/399 (14%), Positives = 136/399 (34%), Gaps = 60/399 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + ++++ L++       S+ + FD    I  G+ G GK+  + A++ +   R F RA 
Sbjct: 1   MLSMLRVENLSV-----IESVTVEFDKGLNIITGETGAGKSVFIGALNLVLGAR-FNRAL 54

Query: 61  YAD----VTRIGSPSFFSTFARVE---GMEGLADISIKLETRDDRSVR-CLQIND--VVI 110
           + D    +      + F+  + ++     +   +  I +    D++ +  + IN     +
Sbjct: 55  FRDPEKKLV---VEAEFTDISHLDEELKDQFEIETDIIIRREIDKTGKNRIFINGRMATV 111

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRMIDFE------ 163
             + +L               +    S     F+D +V  ++  R+      +       
Sbjct: 112 EQLKQLAFGFCDIHGQHEHQMLL--DSATHIAFIDALVEPSLKDRYAETFERYNALEKDI 169

Query: 164 -RLMRGRNRLLTEGYFDSSWCSSIE------AQMAELGVKI-NIARVEMINALSSLIMEY 215
            R+   R ++L E        + IE       +  ++  K+  ++ +E I   ++  +  
Sbjct: 170 SRIRNNRQQILKEKDMLEFQLNEIESMNIDIEEDCQIDEKVGILSNMEKILESAAGALGM 229

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKM--DSMSRRTLIGPHRSDL 273
           ++        L  +     +   S+    E  + +L +   +  D+++        R DL
Sbjct: 230 LRDGEINAYDLISSASTALEGVASYSGDLETASSQLTEATYLINDAIAGV-EKVADRQDL 288

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA 333
                D  +   +              LA+       T    +   +E +  LD+     
Sbjct: 289 DPAELDTLMDRKY-------------RLANLTKKYGPTLEDVVRFGEETAGKLDDINFGQ 335

Query: 334 LFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
               +  +  Q+        ++  L E AK + +   + 
Sbjct: 336 --DNLDKLQIQL------DDIYAELAEDAKVLNLRRGEI 366


>gi|225574604|ref|ZP_03783214.1| hypothetical protein RUMHYD_02681 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038218|gb|EEG48464.1| hypothetical protein RUMHYD_02681 [Blautia hydrogenotrophica DSM
           10507]
          Length = 599

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+++ V +   LA             ILLLDE + HLD++  + L   + +    + M
Sbjct: 116 SGGQRRKVALAKVLAS---------DFDILLLDEPTNHLDDEMISWLEEYLKEFKGVVLM 166

Query: 348 TGTDKSVFDSLNETAKFMRISNHQALC 374
              D+   D +    K + IS+ Q   
Sbjct: 167 VTHDRYFLDKVTN--KILEISHGQLYS 191


>gi|218282382|ref|ZP_03488664.1| hypothetical protein EUBIFOR_01246 [Eubacterium biforme DSM 3989]
 gi|218216668|gb|EEC90206.1| hypothetical protein EUBIFOR_01246 [Eubacterium biforme DSM 3989]
          Length = 253

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I+ L++ ++  + S  + F    ++  G+ G GK+ +++AI +LS  R       ++V R
Sbjct: 2  IEQLSVKDYVLFESCIIDFTNGMSVITGETGAGKSLLIDAIGYLSGDR-----IKSNVIR 56

Query: 67 IGSPSFF 73
           G     
Sbjct: 57 NGKDKAI 63


>gi|221217511|ref|ZP_03588982.1| p115 protein [Borrelia burgdorferi 72a]
 gi|224533965|ref|ZP_03674550.1| p115 protein [Borrelia burgdorferi CA-11.2a]
 gi|225549774|ref|ZP_03770739.1| p115 protein [Borrelia burgdorferi 118a]
 gi|221192789|gb|EEE19005.1| p115 protein [Borrelia burgdorferi 72a]
 gi|224512968|gb|EEF83334.1| p115 protein [Borrelia burgdorferi CA-11.2a]
 gi|225369734|gb|EEG99182.1| p115 protein [Borrelia burgdorferi 118a]
          Length = 815

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++            +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIVLLGFKSFLNRQEFEIGENLSFIVGPNGCGKSNLIDAVRFCMGEDNLKFLRVED 60

Query: 61 YADVT 65
           +D+ 
Sbjct: 61 ISDLI 65


>gi|148642753|ref|YP_001273266.1| DNA repair ATPase SbcC [Methanobrevibacter smithii ATCC 35061]
 gi|148551770|gb|ABQ86898.1| ATPase involved in DNA repair, SbcC [Methanobrevibacter smithii
          ATCC 35061]
          Length = 658

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRN-YASLRLVFD----AQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +  + I+ FR  Y + ++ F        TI + DNG GKT+++ A+++   G
Sbjct: 1  MYLDSIEITNFRPFYGTQKIDFGFNDLENLTIILADNGSGKTSLVNALTWCLYG 54


>gi|109948048|ref|YP_665276.1| hypothetical protein Hac_1562 [Helicobacter acinonychis str.
          Sheeba]
 gi|109715269|emb|CAK00277.1| conserved hypothetical protein fragment 1 [Helicobacter
          acinonychis str. Sheeba]
          Length = 730

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 10/56 (17%)

Query: 5  IKI--KFLNISEFRNY-ASLRLVF-------DAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  + L +  FRN   +  L+             I VG+N VGK+N+LEA+   
Sbjct: 1  MKLYKRVLKLCNFRNLSKNSELLLNSDFENKHGGLVILVGENNVGKSNVLEALKLF 56


>gi|34580818|ref|ZP_00142298.1| DNA repair protein RecN [Rickettsia sibirica 246]
 gi|28262203|gb|EAA25707.1| DNA repair protein RecN [Rickettsia sibirica 246]
          Length = 545

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
           L++  F     L + F+    +  G+ G GK+ +L+AI F    +     +  ++ + G
Sbjct: 4  SLSVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILFCLGYK-----TSNNIIKRG 58

Query: 69 SPSFFS 74
                
Sbjct: 59 KDYAVV 64


>gi|302840295|ref|XP_002951703.1| hypothetical protein VOLCADRAFT_117930 [Volvox carteri f.
           nagariensis]
 gi|300262951|gb|EFJ47154.1| hypothetical protein VOLCADRAFT_117930 [Volvox carteri f.
           nagariensis]
          Length = 1873

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +++ L I +F   +   +          G++G GK+ ++EA S +         +  +  
Sbjct: 512 QLERLYIKDFALVSEQTVRLGPGLNAITGESGSGKSVLVEAFSQVLGA-----PAPQECV 566

Query: 66  RIGSPSFFSTFARVEGMEGL 85
           R  +         V G +  
Sbjct: 567 RAPAEVAVIEGTFVVGEQQR 586


>gi|296126776|ref|YP_003634028.1| hypothetical protein Bmur_1745 [Brachyspira murdochii DSM 12563]
 gi|296018592|gb|ADG71829.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563]
          Length = 323

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          IK   I ++R + + +    +   +FVG+N  GKT IL+ +  +S
Sbjct: 2  IKNFEIHDYRQFKNAKFDDFSNINLFVGENDTGKTTILKFLYCIS 46


>gi|224533039|ref|ZP_03673645.1| p115 protein [Borrelia burgdorferi WI91-23]
 gi|224512033|gb|EEF82428.1| p115 protein [Borrelia burgdorferi WI91-23]
 gi|312149174|gb|ADQ29245.1| P115 protein [Borrelia burgdorferi N40]
          Length = 815

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRAS 60
          + +K + +  F+++            +  VG NG GK+N+++A+ F       +  R   
Sbjct: 1  MVLKKIVLLGFKSFLNRQEFEIGENLSFIVGPNGCGKSNLIDAVRFCMGEDNLKFLRVED 60

Query: 61 YADVT 65
           +D+ 
Sbjct: 61 ISDLI 65


>gi|229586425|ref|YP_002844926.1| DNA repair protein RecN [Rickettsia africae ESF-5]
 gi|228021475|gb|ACP53183.1| DNA repair protein RecN [Rickettsia africae ESF-5]
          Length = 545

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
           L++  F     L + F+    +  G+ G GK+ +L+AI F    +     +  ++ + G
Sbjct: 4  SLSVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILFCLGYK-----TSNNIIKRG 58

Query: 69 SPSFFS 74
                
Sbjct: 59 KDYAVV 64


>gi|37679007|ref|NP_933616.1| DNA repair protein RecN [Vibrio vulnificus YJ016]
 gi|37197749|dbj|BAC93587.1| DNA repair protein RecN [Vibrio vulnificus YJ016]
          Length = 172

 Score = 43.0 bits (100), Expect = 0.069,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 19/128 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+++ F    SL+L      T   G+ G GK+  ++A+     GR     + A + R
Sbjct: 2   LAHLSVNNFAIVKSLQLELSKGMTTITGETGAGKSIAIDALGLCLGGR-----AEASMVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI--RV 112
            G      + A            +E  E L      L        R    IN   +    
Sbjct: 57  QGEDKTEVSAAFLLDNNLHATRWLEDNELLDGSECILRRIITSEGRSRAFINGSPVPLSQ 116

Query: 113 VDELNKHL 120
           +  L + L
Sbjct: 117 LKALGQLL 124


>gi|302680923|ref|XP_003030143.1| hypothetical protein SCHCODRAFT_77659 [Schizophyllum commune
          H4-8]
 gi|300103834|gb|EFI95240.1| hypothetical protein SCHCODRAFT_77659 [Schizophyllum commune
          H4-8]
          Length = 1297

 Score = 43.0 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYASLRL---VFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++ L I   R++   ++    F    T+ VG NG GKT I+E + + + G
Sbjct: 4  LEKLAIRGIRSFDDKQISVIEFFNPVTVIVGHNGSGKTTIIECLKYATTG 53


>gi|260494655|ref|ZP_05814785.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260197817|gb|EEW95334.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 446

 Score = 43.0 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTI------FVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           ++ +  +++   L +    +           G+NG+GK+N +++   L      R  + 
Sbjct: 8  TYIKLKNYKSLIELEVDLTKKENTPKKLISIYGENGIGKSNFVDSFYTLKRIISTRTINE 67

Query: 62 ADVTRI 67
              RI
Sbjct: 68 K--IRI 71


>gi|304316771|ref|YP_003851916.1| DNA repair protein RecN [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
 gi|302778273|gb|ADL68832.1| DNA repair protein RecN [Thermoanaerobacterium
          thermosaccharolyticum DSM 571]
          Length = 570

 Score = 43.0 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I  L+I          + F+    I  G+ G GK+ +++++  L  GR     +  D+ R
Sbjct: 2  ILALSIKNIALIEEAEIKFEDGLNILTGETGAGKSIVIDSMMLLLGGR-----ANKDIIR 56

Query: 67 IGSP 70
           G+ 
Sbjct: 57 NGTQ 60


>gi|254567069|ref|XP_002490645.1| DNA repair protein RAD50 [Pichia pastoris GS115]
 gi|238030441|emb|CAY68365.1| DNA repair protein RAD50 [Pichia pastoris GS115]
          Length = 1323

 Score = 43.0 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRN---YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  L I   R+   +    + F    T+ VG NG GKT I+E + + + G
Sbjct: 30 IYKLAIQGVRSFDPHTPETIQFSKPLTLIVGQNGSGKTTIIECLKYATTG 79


>gi|254490090|ref|ZP_05103282.1| DNA repair protein RecN [Methylophaga thiooxidans DMS010]
 gi|224464678|gb|EEF80935.1| DNA repair protein RecN [Methylophaga thiooxydans DMS010]
          Length = 557

 Score = 43.0 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L++        L L FD   T   G+ G GK+ +++A+S +   R     + +++ R
Sbjct: 2  LTSLSVRNLAVVEDLALTFDKGMTSLTGETGAGKSMLVDALSLVLGDR-----ADSNMIR 56

Query: 67 IGSPSFFS 74
           G+     
Sbjct: 57 HGAERAEV 64


>gi|254429787|ref|ZP_05043494.1| hypothetical protein ADG881_3017 [Alcanivorax sp. DG881]
 gi|196195956|gb|EDX90915.1| hypothetical protein ADG881_3017 [Alcanivorax sp. DG881]
          Length = 73

 Score = 43.0 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 32 FVGDNGVGKTNILEAISFL-SPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLADISI 90
           +GDNG GKT++LEAI F+ S GR FR    + + R G+ +  + +A V   E L  + +
Sbjct: 2  ILGDNGSGKTSVLEAIYFIGSGGRSFRGGRLSRLVRDGAEAA-TLYAEVLAAEELHRLGV 60

Query: 91 KLETRDDRS 99
               ++  
Sbjct: 61 DRSPTEEGG 69


>gi|206977408|ref|ZP_03238304.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217961513|ref|YP_002340083.1| hypothetical protein BCAH187_A4149 [Bacillus cereus AH187]
 gi|222097472|ref|YP_002531529.1| ABC transporter ATP-binding protein [Bacillus cereus Q1]
 gi|229140757|ref|ZP_04269304.1| ABC transporter, ATP-binding protein [Bacillus cereus BDRD-ST26]
 gi|229198146|ref|ZP_04324855.1| ABC transporter, ATP-binding protein [Bacillus cereus m1293]
 gi|206744399|gb|EDZ55810.1| conserved hypothetical protein [Bacillus cereus H3081.97]
 gi|217067479|gb|ACJ81729.1| conserved hypothetical protein [Bacillus cereus AH187]
 gi|221241530|gb|ACM14240.1| ABC transporter ATP-binding protein [Bacillus cereus Q1]
 gi|228585306|gb|EEK43415.1| ABC transporter, ATP-binding protein [Bacillus cereus m1293]
 gi|228642730|gb|EEK99014.1| ABC transporter, ATP-binding protein [Bacillus cereus BDRD-ST26]
          Length = 250

 Score = 43.0 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 34 QSLAFHPNVTFIIGENGTGKSTLLEAIAIALGFNAEGGTKNFR 76


>gi|28871641|ref|NP_794260.1| DNA repair protein RecN [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28854893|gb|AAO57955.1| DNA repair protein RecN [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 557

 Score = 43.0 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 68/218 (31%), Gaps = 33/218 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +     L L  D   ++  G+ G GK+ +L+A+      R     + + V R
Sbjct: 2   LVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDR-----ADSGVVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
            G+                  A ++  +   D    L        R    IN       D
Sbjct: 57  PGADKADILATFDLGDIPEAEAWLKERDLDNDGPCILRRVITAEGRSRSYINGSPCPQGD 116

Query: 115 --ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
              L + L           +    +   RR LD    A D      +     L   R   
Sbjct: 117 LKALGELLIDIHSQHEHQSLLK--TDTHRRLLDEYAGATD------LARQVHLAAQR--- 165

Query: 173 LTEGYFDSSWCS-SIEAQMAELGVKINIARVEMINALS 209
             +   +    S S + Q A    ++   ++E + +LS
Sbjct: 166 WRQTRQELERLSNSGDEQRARH--QLLSYQLEELESLS 201


>gi|289207641|ref|YP_003459707.1| DNA repair protein RecN [Thioalkalivibrio sp. K90mix]
 gi|288943272|gb|ADC70971.1| DNA repair protein RecN [Thioalkalivibrio sp. K90mix]
          Length = 553

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 61/208 (29%), Gaps = 27/208 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ ++I +F     L L  D   +   G+ G GK+ +++ I  L   R     + A + R
Sbjct: 2   LRLISIRDFAIIDHLELELDTGLSALTGETGAGKSILIDVIGQLLGDR-----ADAGMVR 56

Query: 67  IGSPSFF--------------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR- 111
            G+                     A  E  +   D  +       +      IN   +  
Sbjct: 57  EGTQQADLSAEFALPDTGPAGRWLAEQELADPDDDTVLLRRVLTRQGKSRAWINGRPVAV 116

Query: 112 -VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV----FAIDPRHRRRMIDFERLM 166
             +  L + L       +  ++    +   R +LD  +     +          +  R +
Sbjct: 117 GQLRTLGEWLVDIHGQHAHQQLLQRDTQ--RHWLDGFLEGDRVSRVREAHGAWREAARAL 174

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELG 194
                   +             ++AEL 
Sbjct: 175 EQARESQADTSDRLDLLRFQTTELAELA 202


>gi|194365008|ref|YP_002027618.1| SMC domain-containing protein [Stenotrophomonas maltophilia
          R551-3]
 gi|194347812|gb|ACF50935.1| SMC domain protein [Stenotrophomonas maltophilia R551-3]
          Length = 386

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          ++ L I+ +R+   L L    Q  +  GDNG GK+++  A+  L+
Sbjct: 2  LQTLAIAHYRSLHGLVLPLQ-QLNVVTGDNGSGKSSLYRALRLLA 45


>gi|94499777|ref|ZP_01306313.1| ATPase involved in DNA repair [Oceanobacter sp. RED65]
 gi|94427978|gb|EAT12952.1| ATPase involved in DNA repair [Oceanobacter sp. RED65]
          Length = 656

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 12/189 (6%)

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS----LTGF 231
           G  D+      +   A L   I+  R   +  L +     +       +       L  F
Sbjct: 441 GKVDAEIQQEKDNAKARLRAAIDTMRK--LKDLDAKYSTSMSSIQGVKLASDSRELLLEF 498

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC-DKAITIAHGSTG 290
                D+    L++E+ K      + D M     I P    + +     K I     S G
Sbjct: 499 GRITKDRKIELLEQEFIKSFGKLARKDDMEILAKIDPKTFSVTLKDKHGKEINKKKLSAG 558

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTG 349
           E+++  + +       +  T+G    +++D     LD   R  L +        Q+ +  
Sbjct: 559 EKQIFAIAM----LEALGRTSGRNLPVIIDTPLGRLDSHHRTKLVKNYFPTASHQVLILS 614

Query: 350 TDKSVFDSL 358
           TD  + +S 
Sbjct: 615 TDTEIDESF 623


>gi|326794218|ref|YP_004312038.1| conserved hypothetical protein, P-loop containing nucleoside
          triphosphate hydrolase [Marinomonas mediterranea MMB-1]
 gi|326544982|gb|ADZ90202.1| conserved hypothetical protein, putative P-loop containing
          nucleoside triphosphate hydrolase [Marinomonas
          mediterranea MMB-1]
          Length = 369

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          I  + +  F+ Y        +  T+F G+N VGK+  ++A++ 
Sbjct: 2  ISRIELKNFKCYKRQNFDLGS-LTVFCGNNSVGKSTAIQALAI 43


>gi|319654166|ref|ZP_08008255.1| ABC transporter [Bacillus sp. 2_A_57_CT2]
 gi|317394100|gb|EFV74849.1| ABC transporter [Bacillus sp. 2_A_57_CT2]
          Length = 250

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGF 56
           + F  + T  +G+NG+GK+ +LEA++      + G  F
Sbjct: 37 EVPFHPKVTFLIGENGMGKSTLLEAVAVALGFNAEGGSF 75


>gi|269126405|ref|YP_003299775.1| DNA repair protein RecN [Thermomonospora curvata DSM 43183]
 gi|268311363|gb|ACY97737.1| DNA repair protein RecN [Thermomonospora curvata DSM 43183]
          Length = 575

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 52/186 (27%), Gaps = 29/186 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L       +  G+ G GKT ++ ++  L  GR     +
Sbjct: 7   MVEEVRIQGLGVID-----EAVLELSPGFNVVTGETGAGKTMVVTSLGLLFGGR-----A 56

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV---VIRVVDELN 117
                R G+    +   R+         S   E   +     L I        R    L 
Sbjct: 57  DPQRVRPGAGRA-TVEGRIVVDPAGRVASRVAEAGAELDEDTLIITRSVSAEGRSRAHLG 115

Query: 118 KHLRISWL---VPSMDRIFSGLSMERR------------RFLDRMVFAIDPRHRRRMIDF 162
                  L   +        G S ++R            R+  R + A    +       
Sbjct: 116 GRSVPVGLLIALADDLVAVHGQSDQQRLLQPGRQRAALDRYAGRELAAPLRAYTAAYQRH 175

Query: 163 ERLMRG 168
            ++   
Sbjct: 176 RKVTAQ 181


>gi|225374810|ref|ZP_03752031.1| hypothetical protein ROSEINA2194_00430 [Roseburia inulinivorans
          DSM 16841]
 gi|225213379|gb|EEG95733.1| hypothetical protein ROSEINA2194_00430 [Roseburia inulinivorans
          DSM 16841]
          Length = 1082

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          K+  L +  +  ++ + + F    T+  G+NG GK+ +L+AI F+   
Sbjct: 3  KLTRLKLINWHRFSDVTIDFGDS-TLISGENGAGKSTLLDAIQFVVTC 49


>gi|254481908|ref|ZP_05095151.1| hypothetical protein GPB2148_1599 [marine gamma proteobacterium
          HTCC2148]
 gi|214038037|gb|EEB78701.1| hypothetical protein GPB2148_1599 [marine gamma proteobacterium
          HTCC2148]
          Length = 662

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 6  KIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +IK L ++ F++       + F    T+  G N  GK+ +L+A+ F
Sbjct: 3  QIKSLRLANFKSIGAEVQEISFAP-ITLLFGPNSAGKSTVLQALVF 47


>gi|91200877|emb|CAJ73932.1| similar to DNA repair protein RecN [Candidatus Kuenenia
          stuttgartiensis]
          Length = 571

 Score = 43.0 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L IS F       +    +  +F G  GVGK+ ++ A+ F+  GR F      D+ R
Sbjct: 2  LQELYISNFVLIDKATITLSERLNVFSGATGVGKSLVIGALHFILGGR-F----TQDIVR 56

Query: 67 IGSPSFFST 75
           G       
Sbjct: 57 NGKDEAVVV 65


>gi|295105869|emb|CBL03412.1| ATPase components of ABC transporters with duplicated ATPase
           domains [Gordonibacter pamelaeae 7-10-1-b]
          Length = 425

 Score = 43.0 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 14/113 (12%)

Query: 266 IGPHRSDLIVDYCDKAI---TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEI 322
            GP    L                 S GE+K + +   LA             +L LDE 
Sbjct: 87  YGPKAVRLRYLLGIDDAWLWRFDTLSHGERKRIQIACALAA---------DPVLLALDEP 137

Query: 323 SAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           + HLD D R+ + R + +      +   D+++ D L  +  F  +   +A+ +
Sbjct: 138 TNHLDADTRDLVARTLAEYRRTGLLVSHDRALLDGLATSCVF--VDQGRAVTV 188


>gi|156741095|ref|YP_001431224.1| AAA ATPase [Roseiflexus castenholzii DSM 13941]
 gi|156232423|gb|ABU57206.1| AAA ATPase [Roseiflexus castenholzii DSM 13941]
          Length = 571

 Score = 43.0 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +  L I  F+ +  + +    +  +F+G N  GKT+ L+A++ 
Sbjct: 2  LTSLTIRNFKLFPDVAIDLGERV-VFIGPNNSGKTSALQALAL 43


>gi|110668025|ref|YP_657836.1| chromosome segregation protein [Haloquadratum walsbyi DSM 16790]
 gi|109625772|emb|CAJ52207.1| chromosome segregation protein [Haloquadratum walsbyi DSM 16790]
          Length = 687

 Score = 43.0 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 4  RI-KIKFLNISEFRNYASLR-LVFD----AQHTIFVGDNGVGKTNILEAISFL 50
          R+ +I  + ++ +R Y  L  +        +  +  G NG GK+NIL A+S  
Sbjct: 33 RMTEILQIKMNNYRQYEGLNKIDLSTIGNKKINVIEGQNGAGKSNILNAVSLC 85


>gi|159114150|ref|XP_001707300.1| RAD50 DNA repair protein, putative [Giardia lamblia ATCC 50803]
 gi|33667838|gb|AAQ24519.1| Rad50 [Giardia intestinalis]
 gi|157435404|gb|EDO79626.1| RAD50 DNA repair protein, putative [Giardia lamblia ATCC 50803]
          Length = 1387

 Score = 43.0 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 7  IKFLNISEFRNYASL--RLVFDAQHTIFVGDNGVGKT 41
          +  L +   R+Y      +VF    TI  G NG GK+
Sbjct: 4  LDQLTLKNIRSYRDQLSTIVFSPNLTIITGHNGAGKS 40


>gi|320536215|ref|ZP_08036262.1| hypothetical protein HMPREF9554_00990 [Treponema phagedenis F0421]
 gi|320146937|gb|EFW38506.1| hypothetical protein HMPREF9554_00990 [Treponema phagedenis F0421]
          Length = 426

 Score = 43.0 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 12/127 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISF-LSPGRGFRRASYA 62
           + +K + I   R      + F  A   +  G N  GKT I ++I+  L   + F      
Sbjct: 1   MLLKNIEIRNVRKIKQAEIEFHGAGVQVIQGLNKSGKTTIAQSIALTLGGSKDFVPG--- 57

Query: 63  DVTRIGSPSFFSTFA-----RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
            +  +G              ++  + G   ++  +   D+ + R  +++  V   +D + 
Sbjct: 58  -MISVGEEQAEIIAYTDDELKIRTLIGEK-VTQDVSRLDELTGRYAKVSGGVRAFLDSIR 115

Query: 118 KHLRISW 124
             L + +
Sbjct: 116 SGLEMPF 122


>gi|319404501|emb|CBI78106.1| DNA repair protein RecN [Bartonella rochalimae ATCC BAA-1498]
          Length = 555

 Score = 43.0 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 8/142 (5%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I        + + F    ++  G+ G GK+ +L+++S    GRG      + + R
Sbjct: 2   LVQLSIHNIVLIERVDIHFTEGLSVLTGETGTGKSILLDSLSLALGGRG-----DSSLVR 56

Query: 67  IG-SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            G +    +    V     +  +  +     +  +   ++     R    LN  +    L
Sbjct: 57  HGMTQGQVTAVFNVPVSHPVRRLICENGFDCEGDIILRRVQSSDGRSRGFLNDQVISITL 116

Query: 126 VPSMDRIFSG--LSMERRRFLD 145
           +  + R+        + R F+D
Sbjct: 117 MRDIGRMLVEIHGQHDDRAFVD 138


>gi|313206051|ref|YP_004045228.1| DNA sulfur modification protein dndd [Riemerella anatipestifer
          DSM 15868]
 gi|312445367|gb|ADQ81722.1| DNA sulfur modification protein DndD [Riemerella anatipestifer
          DSM 15868]
 gi|315022364|gb|EFT35392.1| DNA repair ATPase [Riemerella anatipestifer RA-YM]
          Length = 705

 Score = 43.0 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEFRNYA---SLRLVFDAQHTIFV--GDNGVGKTNILEAISFLSPGR 54
          + IK + ++ FR Y     + L+      I V  G NG GKT  L ++ +   G+
Sbjct: 1  MFIKEIELNNFRIYKGINKINLLPQDGKNIIVVSGKNGFGKTTFLMSLVWCLYGK 55


>gi|53713058|ref|YP_099050.1| hypothetical protein BF1769 [Bacteroides fragilis YCH46]
 gi|52215923|dbj|BAD48516.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 377

 Score = 43.0 bits (100), Expect = 0.072,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I  L +  F+++    L F    T+  G N  GK+++++++  L
Sbjct: 2  ITNLLLHNFKSHKKTDLKFS-NLTVLTGINSAGKSSVIQSLLLL 44


>gi|260219437|emb|CBA26282.1| hypothetical protein Csp_E33700 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 1102

 Score = 43.0 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++A     +   Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1  MRLNSIKLSGFKSFAEPTNFLLPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES 60

Query: 61 YADVTRIGSPS 71
            DV   G+ S
Sbjct: 61 MQDVIFNGTTS 71


>gi|126463946|ref|YP_001045059.1| putative ATP-binding protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126105757|gb|ABN78287.1| putative ATP-binding protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 344

 Score = 43.0 bits (100), Expect = 0.073,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +  +    F  +  + L F     I++G NG GKT++L+ + 
Sbjct: 4  LTGILAENFAAFKKIDLKFKPGINIYIGGNGTGKTHLLKTLY 45


>gi|325475140|gb|EGC78325.1| hypothetical protein HMPREF9353_00339 [Treponema denticola F0402]
          Length = 639

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K+  + I +++ +     +  D + T  VG N  GKT+ L AI
Sbjct: 1  MKLTKVEIFKYKCFQKRQEVEIDPRITTVVGMNESGKTSFLSAI 44


>gi|305682181|ref|ZP_07404985.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
          14266]
 gi|305658654|gb|EFM48157.1| conserved hypothetical protein [Corynebacterium matruchotii ATCC
          14266]
          Length = 867

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASY 61
          + I  + I +F+    LR     D    +  GDN  GK+ +LEAI+ +   +   R  + 
Sbjct: 1  MLITDIEIRDFKTIRHLRWSNIPDHGVFVIHGDNEQGKSTVLEAIAQVLHTKHSSRAQAV 60

Query: 62 AD 63
           D
Sbjct: 61 KD 62


>gi|237798546|ref|ZP_04587007.1| DNA repair protein RecN [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021399|gb|EGI01456.1| DNA repair protein RecN [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 557

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 68/218 (31%), Gaps = 33/218 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +     L L  D   ++  G+ G GK+ +L+A+      R     + + V R
Sbjct: 2   LVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDR-----ADSGVVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
            G+                  A ++  +   D    L        R    IN       D
Sbjct: 57  PGADKADILATFDLGDIPEAEAWLKERDLDNDGPCILRRVITAEGRSRSYINGSPCPQGD 116

Query: 115 --ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
              L + L           +    +   RR LD    A D      +     L   R   
Sbjct: 117 LKALGELLIDIHSQHEHQSLLK--TDTHRRLLDEYAGATD------LARQVHLAAQR--- 165

Query: 173 LTEGYFDSSWCS-SIEAQMAELGVKINIARVEMINALS 209
             +   +    S S + Q A    ++   ++E + +LS
Sbjct: 166 WRQTRQELERLSNSGDEQRARH--QLLSYQLEELESLS 201


>gi|323339387|ref|ZP_08079671.1| exonuclease [Lactobacillus ruminis ATCC 25644]
 gi|323093188|gb|EFZ35776.1| exonuclease [Lactobacillus ruminis ATCC 25644]
          Length = 1034

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVF----DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          +K   L +  F  Y    + F    +A   +  G  G GKT I +A+ F   GR    ++
Sbjct: 1  MKPLKLKMKNFGPYEDAEVDFTKFSEAPLFLITGATGSGKTTIFDAMCFALYGRS---ST 57

Query: 61 YAD 63
            D
Sbjct: 58 DKD 60


>gi|152999145|ref|YP_001364826.1| SMC domain-containing protein [Shewanella baltica OS185]
 gi|160873752|ref|YP_001553068.1| SMC domain-containing protein [Shewanella baltica OS195]
 gi|217971828|ref|YP_002356579.1| SMC domain-containing protein [Shewanella baltica OS223]
 gi|304411296|ref|ZP_07392911.1| SMC domain-containing protein [Shewanella baltica OS183]
 gi|307306579|ref|ZP_07586322.1| SMC domain-containing protein [Shewanella baltica BA175]
 gi|151363763|gb|ABS06763.1| SMC domain protein [Shewanella baltica OS185]
 gi|160859274|gb|ABX47808.1| SMC domain protein [Shewanella baltica OS195]
 gi|217496963|gb|ACK45156.1| SMC domain-containing protein [Shewanella baltica OS223]
 gi|304350489|gb|EFM14892.1| SMC domain-containing protein [Shewanella baltica OS183]
 gi|306910870|gb|EFN41298.1| SMC domain-containing protein [Shewanella baltica BA175]
 gi|315265977|gb|ADT92830.1| SMC domain-containing protein [Shewanella baltica OS678]
          Length = 94

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 18 YASLR-LVFDAQHTIFVGDNGVGKTNILEAISF 49
             L  L F    T FVG+NG GK+ ++EAI+ 
Sbjct: 32 IKELDFLEFHPDVTFFVGENGTGKSTLIEAIAV 64


>gi|114321055|ref|YP_742738.1| DNA repair protein RecN [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227449|gb|ABI57248.1| DNA replication and repair protein RecN [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 564

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 95/297 (31%), Gaps = 44/297 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR------------ 54
           +  ++I +F     L L F A   +  G+ G GK+ +L+A+      R            
Sbjct: 2   LSHIDIRDFAIVDQLELDFGAGMNVLTGETGAGKSILLDALGLCLGDRADSGTVRPGAKR 61

Query: 55  -----GFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
                 FR A  + V    +               + +        + R      +  + 
Sbjct: 62  ADLSVSFRLAPDSPVHDWLAEHDLDEDGDCILRRTIQESGRTRGYINGRPAPLNLLKALG 121

Query: 110 IRVVDELNKHLRISWLVPSMDRIF------SGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
            ++VD   +H     L   + R         G ++ER R L + + A+D    R +    
Sbjct: 122 EQLVDIHGQHAHQLLLRRHVQRRILDEHADEGGALERVRSLHQQLRAVDEE-LRALEGDR 180

Query: 164 RLMRGRNRLLTEGYFDSSWC-------SSIEAQ---MAELGVKINIARVEMINALSSLIM 213
                R  LL     + +          ++E +   +A  G  I +A  ++++ L     
Sbjct: 181 ESHEDRLALLRYQVDELAALELTVEGIEALEQEQKRLANAGALIQMA-QQILDPLYDDEQ 239

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQ-------SFCALKE--EYAKKLFDGRKMDSMS 261
                      +L     LD   D+       +   L+E  +  ++  D  ++D   
Sbjct: 240 SAQAALGRASRELDGHAGLDPALDEARELFGNALVQLEEGCDALRRFADNLELDPER 296


>gi|326475144|gb|EGD99153.1| nuclear condensin complex subunit Smc2 [Trichophyton tonsurans CBS
           112818]
          Length = 1179

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIIEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSISPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|327299094|ref|XP_003234240.1| nuclear condensin complex subunit Smc2 [Trichophyton rubrum CBS
           118892]
 gi|326463134|gb|EGD88587.1| nuclear condensin complex subunit Smc2 [Trichophyton rubrum CBS
           118892]
          Length = 1183

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIIEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSISPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|313886133|ref|ZP_07819865.1| conserved hypothetical protein [Porphyromonas asaccharolytica
          PR426713P-I]
 gi|312924394|gb|EFR35171.1| conserved hypothetical protein [Porphyromonas asaccharolytica
          PR426713P-I]
          Length = 438

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++IS FR     ++  +   T+  G N  GK+ I   + +           Y ++ 
Sbjct: 5  QIHISNFRAIEDAQIALN-GITVLTGLNATGKSTISRMMYYAGHYASH----YRELI 56


>gi|315052242|ref|XP_003175495.1| chromosomes protein 2 structural maintenance [Arthroderma gypseum
           CBS 118893]
 gi|311340810|gb|EFR00013.1| chromosomes protein 2 structural maintenance [Arthroderma gypseum
           CBS 118893]
          Length = 1179

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIIEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSISPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|300361158|ref|ZP_07057335.1| DNA repair ATPase [Lactobacillus gasseri JV-V03]
 gi|300353777|gb|EFJ69648.1| DNA repair ATPase [Lactobacillus gasseri JV-V03]
          Length = 812

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 11/127 (8%)

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
              ++Y K L  GR +D    + L    R+D       K   + + S G  + +   + L
Sbjct: 693 EDAKKYFKLLTGGRYIDIELDKKLK-VKRAD------GKKFEVEYLSRGTSEQLYFALKL 745

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLN 359
           A    +++    A  +L+D+   + D  + N +  ++ ++   +Q+ +    + +  SL 
Sbjct: 746 AFVEQVADKI--ALPILIDDAFVNFDAQRTNYIVELLKELAKKTQVLIFTARQDLVTSLE 803

Query: 360 ETAKFMR 366
                + 
Sbjct: 804 MKPIMIE 810



 Score = 38.0 bits (87), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          +K+  L I  F     +    +   TIF+G N  GK+  +  +  +  G   R   
Sbjct: 2  MKLTQLKIIHFGKLNDVTFNLNKDLTIFLGANEAGKSTTVAFVKQVLFGFHLRTNK 57


>gi|261366955|ref|ZP_05979838.1| DNA repair protein RecN [Subdoligranulum variabile DSM 15176]
 gi|282571073|gb|EFB76608.1| DNA repair protein RecN [Subdoligranulum variabile DSM 15176]
          Length = 555

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 18/116 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I          + F     +  G+ G GK+ ++++I+ +   R  R     ++ R
Sbjct: 2   LANLKIENVAVIEKAEVAFTPGLNVLTGETGAGKSILIDSINAILGNRTSR-----ELVR 56

Query: 67  IGSPSF--FSTFARV----------EGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            G+     ++TF  +           G E   D+ +  E   +      +IN +  
Sbjct: 57  SGAQKACIWATFESIPKSVQEKLEKSGYEASEDLLLYREINVEGKG-SCRINGMPA 111


>gi|193212235|ref|YP_001998188.1| DNA repair protein RecN [Chlorobaculum parvum NCIB 8327]
 gi|193085712|gb|ACF10988.1| DNA repair protein RecN [Chlorobaculum parvum NCIB 8327]
          Length = 569

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 75/245 (30%), Gaps = 15/245 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           +K L + +F     L + F    TI  G+ G GK+ ++ A++ +   R      R  +  
Sbjct: 2   LKSLYVRDFALIDELSVSFAPGLTIITGETGAGKSILMGALNMVLGERASAEVVRAGARK 61

Query: 63  DVTR--IGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            V     G   +      +  E +E   ++ ++ +       RC   +      + +   
Sbjct: 62  AVIEAVFGGEHYEMIGEMLDEEEIERTPELILRRDISATGQSRCFINDTPCTVSLLKRAG 121

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-PRHRRRMIDFERLMRGRNRLLTEGY 177
              +        ++               +   +  ++R  + ++  L R    L     
Sbjct: 122 QQLVDLHGQHDHQLLLHAETHAGMLDGFGLLHAETAQYRATLDEYRTLRRELQSLNERAD 181

Query: 178 FDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
                   I+ Q  EL V        ++      I E +          SL+  L     
Sbjct: 182 ALREKRDFIDYQYKELDVA------ALVEGEEQSIDEEINLLENAETLFSLSTELGQNLY 235

Query: 238 QSFCA 242
           +S  +
Sbjct: 236 ESDSS 240


>gi|154504483|ref|ZP_02041221.1| hypothetical protein RUMGNA_01987 [Ruminococcus gnavus ATCC 29149]
 gi|153795258|gb|EDN77678.1| hypothetical protein RUMGNA_01987 [Ruminococcus gnavus ATCC 29149]
          Length = 602

 Score = 43.0 bits (100), Expect = 0.074,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           +   D  + I H S G+++ V +   LA             +LLLDE + HLD +  + L
Sbjct: 105 LGITDHTMKIEHLSGGQKRRVAMAKVLAE---------DFDLLLLDEPTNHLDGEMISWL 155

Query: 335 FRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371
              +      + M   D+   D +    + + IS+ +
Sbjct: 156 EGYLRAYRGTVIMVTHDRYFLDQVTN--RILEISHGK 190


>gi|315655558|ref|ZP_07908457.1| DNA repair protein RecN [Mobiluncus curtisii ATCC 51333]
 gi|315656529|ref|ZP_07909416.1| DNA repair protein RecN [Mobiluncus curtisii subsp. holmesii ATCC
          35242]
 gi|315490213|gb|EFU79839.1| DNA repair protein RecN [Mobiluncus curtisii ATCC 51333]
 gi|315492484|gb|EFU82088.1| DNA repair protein RecN [Mobiluncus curtisii subsp. holmesii ATCC
          35242]
          Length = 575

 Score = 43.0 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++ L I      +S+ L F    T+  G+ G GKT +L ++ +L   +
Sbjct: 2  LESLRIENLGTISSVALEFSPGFTVITGETGAGKTMLLTSLDWLLGAK 49


>gi|229134832|ref|ZP_04263640.1| ABC transporter, ATP-binding protein [Bacillus cereus BDRD-ST196]
 gi|228648685|gb|EEL04712.1| ABC transporter, ATP-binding protein [Bacillus cereus BDRD-ST196]
          Length = 241

 Score = 43.0 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 34 QSLAFHPNVTFIIGENGTGKSTLLEAIAIALGFNAEGGTKNFR 76


>gi|710421|gb|AAC44802.1| unknown [Staphylococcus aureus]
          Length = 368

 Score = 43.0 bits (100), Expect = 0.075,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 35/249 (14%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + +E +   L  +++    + +     
Sbjct: 119 YTSNLSRFNDLTKYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQAQ 178

Query: 207 --ALSSLIMEYVQKENFPHIKLSLTGFL--------DGKFDQSFCALKEEYAKKLFDGR- 255
              LS+ I          +++               D        +L +E+ K++ D R 
Sbjct: 179 VSDLSAQINHMETDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRL 238

Query: 256 ------KMDSMS-----RRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                  ++ +      R T+I  +   + V + +  +      S   ++++ V + ++ 
Sbjct: 239 PQVINEAVEILKHLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISL 298

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNET 361
            +++         L++D+   H D+ +   +   +  +    Q+      K       E 
Sbjct: 299 IKVLRPYY--PFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEV 356

Query: 362 AKFMRISNH 370
               +I   
Sbjct: 357 ITLNKIEEG 365


>gi|262370019|ref|ZP_06063346.1| ATP-dependent OLD family endonuclease [Acinetobacter johnsonii
          SH046]
 gi|262315058|gb|EEY96098.1| ATP-dependent OLD family endonuclease [Acinetobacter johnsonii
          SH046]
          Length = 666

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP---------GR 54
          +K+  +++  +R+   S  +  +   T+ VG N  GKT +L+AI+ L+P          R
Sbjct: 1  MKLVKVHVQNYRSILDSGEIEIEKIKTVLVGINEAGKTALLKAINNLNPASDIEKVDILR 60

Query: 55 GFRRASYADVTRIGSPSFFSTFARVEG 81
           F R+ Y++  +  S         V+G
Sbjct: 61 DFPRSKYSEYVQNKSAEELKKTPLVKG 87


>gi|162456154|ref|YP_001618521.1| hypothetical protein sce7871 [Sorangium cellulosum 'So ce 56']
 gi|161166736|emb|CAN98041.1| hypothetical protein sce7871 [Sorangium cellulosum 'So ce 56']
          Length = 632

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 4/105 (3%)

Query: 7   IKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           I    IS F++ Y +  L      TIF G N  GK+  +++I  ++     R  S   + 
Sbjct: 2   ITRWQISNFKSAYDTTELALRP-ITIFAGANSSGKSTFIQSILLVAQSLSSRVYS-RPIV 59

Query: 66  RIGSPSFFSTFARVEGMEGLAD-ISIKLETRDDRSVRCLQINDVV 109
             G  +   +F  V       D ISI    R     R   +  + 
Sbjct: 60  LNGHIARLGSFDDVASTNSEQDEISIGFTIRVPGDGRESGVRRLR 104


>gi|149210167|ref|XP_001522458.1| hypothetical protein MGCH7_ch7g565 [Magnaporthe oryzae 70-15]
 gi|86196520|gb|EAQ71158.1| hypothetical protein MGCH7_ch7g565 [Magnaporthe oryzae 70-15]
          Length = 1115

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
            I  + +  F  Y     +      + +G NG GK++++ AI  
Sbjct: 88  AILRVTVENFVTYEHAEFLPGPNLNMVIGPNGTGKSSLVCAICL 131


>gi|325969198|ref|YP_004245390.1| hypothetical protein VMUT_1684 [Vulcanisaeta moutnovskia 768-28]
 gi|323708401|gb|ADY01888.1| hypothetical protein VMUT_1684 [Vulcanisaeta moutnovskia 768-28]
          Length = 354

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 12 ISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          I  F+     L + F   +TI VG +G GKT+++EA++ L   RG
Sbjct: 5  IKGFKGLSEELTINFS-GNTIIVGRSGSGKTSLMEALALLMQSRG 48


>gi|317060115|ref|ZP_07924600.1| DNA replication and repair protein recF [Fusobacterium sp. D12]
 gi|313685791|gb|EFS22626.1| DNA replication and repair protein recF [Fusobacterium sp. D12]
          Length = 52

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 322 ISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
           ++++ D  +  ++ + + +   Q+FMT T+     +LN  AK+ RI   + 
Sbjct: 1   MTSYFDRQRCESVLKYLQEKKVQVFMTSTE-----NLNIDAKYYRIEKGEV 46


>gi|309389382|gb|ADO77262.1| hypothetical protein Hprae_1111 [Halanaerobium praevalens DSM 2228]
          Length = 809

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 294 VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTD 351
              + +  A    +   TG    ++LD+   +LD  +R    +++       QI  T  +
Sbjct: 738 AAALALRFAIFDNLFKQTG--GFIILDDCLVNLDPKRRKNAIKLINQYQKKYQILYTTCE 795

Query: 352 KSVFDSLNET 361
                 LN  
Sbjct: 796 PERAAELNGN 805



 Score = 36.8 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          +K++      F    +    F+    I +G N  GK+ ++ AI 
Sbjct: 1  MKLREFKTEIFAGINNRSYKFENGLNIILGANEAGKSTLINAIY 44


>gi|289671596|ref|ZP_06492486.1| hypothetical protein PsyrpsF_00055 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 750

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
           ++  + ++  R      + F       +G  G GK+ ILE +  +
Sbjct: 307 RLSSVRMTGLRYLEDQDVQFSPNLNCLIGARGSGKSTILELLRIM 351


>gi|237738164|ref|ZP_04568645.1| ATP-dependent OLD family endonuclease [Fusobacterium mortiferum
          ATCC 9817]
 gi|229420044|gb|EEO35091.1| ATP-dependent OLD family endonuclease [Fusobacterium mortiferum
          ATCC 9817]
          Length = 448

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          + +K L I  ++   +  + F+    +F+G +  GK++I+ AI F    R FR     +
Sbjct: 1  MYLKELKIKNWQCVENTEVKFE-NLMLFIGQSNSGKSSIMSAIMFFLGYRNFRVRDLRN 58


>gi|167766931|ref|ZP_02438984.1| hypothetical protein CLOSS21_01448 [Clostridium sp. SS2/1]
 gi|167710906|gb|EDS21485.1| hypothetical protein CLOSS21_01448 [Clostridium sp. SS2/1]
          Length = 625

 Score = 43.0 bits (100), Expect = 0.076,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          ++IK+L+I  F++   + +       I VG N  GK++IL
Sbjct: 1  MEIKYLSIKNFKSIRHMEISDIQNALILVGKNNTGKSSIL 40


>gi|326482222|gb|EGE06232.1| nuclear condensin complex subunit smc2 [Trichophyton equinum CBS
           127.97]
          Length = 1179

 Score = 43.0 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIIEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSISPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|326784113|ref|YP_004324506.1| recombination endonuclease subunit [Prochlorococcus phage Syn1]
 gi|310004845|gb|ADO99236.1| recombination endonuclease subunit [Prochlorococcus phage Syn1]
          Length = 576

 Score = 43.0 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 11/80 (13%)

Query: 28  QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGMEGLAD 87
           +  + VG+NG GK+ IL+A++F   G+ FR+ +   +              +   + + +
Sbjct: 28  KTNLIVGENGAGKSTILDALTFSLFGKPFRKIN-KPM----------LVNSINEKDCVTE 76

Query: 88  ISIKLETRDDRSVRCLQIND 107
           I   +   + + VR ++ N 
Sbjct: 77  IEFSIGKNEFKVVRGIKPNK 96


>gi|206603745|gb|EDZ40225.1| ABC transporter, ATP-binding subunit [Leptospirillum sp. Group II
          '5-way CG']
          Length = 389

 Score = 43.0 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I+ + +  F +     L       + VG N  GK+N+++ + FL+
Sbjct: 2  IRKMRLEHFMSINEASLDLG-MTNVLVGPNMSGKSNLIQGLMFLT 45


>gi|194015381|ref|ZP_03053997.1| gp49 [Bacillus pumilus ATCC 7061]
 gi|194012785|gb|EDW22351.1| gp49 [Bacillus pumilus ATCC 7061]
          Length = 660

 Score = 43.0 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          MT  I++  L++S F+   S  L    +     GDN  GKT + +A  +L   +  +   
Sbjct: 1  MTKNIRLAELHLSNFKGVKSFTLETGGESARVYGDNATGKTTLFDAFMWLLFDKDSQNKK 60

Query: 61 YADV 64
            ++
Sbjct: 61 DFEI 64


>gi|119871749|ref|YP_929756.1| ABC transporter related [Pyrobaculum islandicum DSM 4184]
 gi|119673157|gb|ABL87413.1| ABC transporter related [Pyrobaculum islandicum DSM 4184]
          Length = 253

 Score = 43.0 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 15/97 (15%)

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALF----RIV 338
              H S G+ ++VL+   L              +LLLDE +AHLD   +  +     R+ 
Sbjct: 133 PYTHLSGGQLQLVLIARALVQ---------EPQVLLLDEPTAHLDFKNQLRVLSTVRRLA 183

Query: 339 TDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
              G  + MT  D ++  + ++  K + + + + + +
Sbjct: 184 KASGVAVLMTLHDPNLAAAYSD--KIIVVKDGRVVAV 218


>gi|317495105|ref|ZP_07953475.1| DNA repair protein RecN [Gemella moribillum M424]
 gi|316914527|gb|EFV36003.1| DNA repair protein RecN [Gemella moribillum M424]
          Length = 566

 Score = 43.0 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI +F    S  +      T+  G+ G GK+ IL AIS LS   G R ++     R
Sbjct: 2  LIQLNIKQFGIIESATIELKNGLTVLSGETGAGKSMILAAISQLS---GQRTSTS--YIR 56

Query: 67 IGSP 70
           G  
Sbjct: 57 YGEE 60


>gi|300718848|ref|YP_003743651.1| ABC transporter ATP-binding protein [Erwinia billingiae Eb661]
 gi|299064684|emb|CAX61804.1| ABC transporter, ATP-binding protein [Erwinia billingiae Eb661]
          Length = 234

 Score = 43.0 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 18/121 (14%)

Query: 259 SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
              ++T+I   R DL      +   +   S G+Q+ V +                  ILL
Sbjct: 117 ERLKKTMIALERVDLANFALRRPADL---SGGQQQRVALA---------RAIIAEPGILL 164

Query: 319 LDEISAHLDEDKRNALFRIVTDIGSQIFMTGT----DKSVFDSLNETAKFMRISNHQALC 374
            DE  ++LD D R +L R ++ + SQ+  T      D++  + L   ++ + +S+     
Sbjct: 165 FDEPLSNLDRDLRESLCREMSSLLSQLGTTAVYVTHDRNEAELL--ASRIVHLSHGSVTS 222

Query: 375 I 375
           I
Sbjct: 223 I 223


>gi|296328642|ref|ZP_06871159.1| ferric enterobactin transport ATP-binding protein [Fusobacterium
          nucleatum subsp. nucleatum ATCC 23726]
 gi|296154241|gb|EFG95042.1| ferric enterobactin transport ATP-binding protein [Fusobacterium
          nucleatum subsp. nucleatum ATCC 23726]
          Length = 259

 Score = 43.0 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 18 YASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +L + F     + +G NG GK+ +L+AI  L
Sbjct: 19 FENLSVNFAKGFNVILGPNGAGKSTLLKAIFGL 51


>gi|225022841|ref|ZP_03712033.1| hypothetical protein CORMATOL_02887 [Corynebacterium matruchotii
          ATCC 33806]
 gi|224944365|gb|EEG25574.1| hypothetical protein CORMATOL_02887 [Corynebacterium matruchotii
          ATCC 33806]
          Length = 338

 Score = 43.0 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAISFLSPGR-GFRRASY 61
          + I  + I +F+    LR     D    +  GDN  GK+ +LEAI+ +   +   R  + 
Sbjct: 1  MLITDIEIRDFKTIRHLRWSNIPDHGVFVIHGDNEQGKSTVLEAIAQVLHTKHSSRAQAV 60

Query: 62 AD 63
           D
Sbjct: 61 KD 62


>gi|119873428|ref|YP_931435.1| hypothetical protein Pisl_1945 [Pyrobaculum islandicum DSM 4184]
 gi|119674836|gb|ABL89092.1| hypothetical protein Pisl_1945 [Pyrobaculum islandicum DSM 4184]
          Length = 374

 Score = 43.0 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          I +F++ A   L      TI +G    GK+NIL+A++ L  
Sbjct: 5  IRDFKSVAHAELEVAP-LTILIGPPAGGKSNILDALAVLGY 44


>gi|88855482|ref|ZP_01130146.1| DNA repair protein RecN [marine actinobacterium PHSC20C1]
 gi|88815389|gb|EAR25247.1| DNA repair protein RecN [marine actinobacterium PHSC20C1]
          Length = 568

 Score = 43.0 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 60/176 (34%), Gaps = 25/176 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ ++I +    AS RL      T   G+ G GKT ++ A+  L   R     + A   R
Sbjct: 2   IEEISIRDLGVIASARLPLGPGFTALTGETGAGKTMVVTALGLLLGER-----ADAAAIR 56

Query: 67  IGSPSFFS-----------TFARVEGMEGLAD----ISIKLETRDDRSVRCLQINDVVIR 111
             S                   RV    G  D    + ++   R+ RS   +      + 
Sbjct: 57  ANSEQASVEGRWLIDPQSAVAERVRDAGGDLDDGELLLVRTVAREGRSRAVVGGRSAPVG 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
           V+ EL   L +        R+    +  +R  LDR   A        +  ++ + R
Sbjct: 117 VLTELGDQLVVVHGQSEQIRL--KSATAQRNALDRFAGA---ELATVLGQYQTVFR 167


>gi|304440613|ref|ZP_07400497.1| lantibiotic protection ABC superfamily ATP binding cassette
          transporter [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370800|gb|EFM24422.1| lantibiotic protection ABC superfamily ATP binding cassette
          transporter [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 761

 Score = 43.0 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +K K + +  F  + +  L F+       G+N  GK+ +  AI  L  G  
Sbjct: 1  MKFKKIELKSFGKFNNKTLDFEDGFNFIYGENEAGKSTMESAIYGLFYGFS 51


>gi|71908175|ref|YP_285762.1| hypothetical protein Daro_2559 [Dechloromonas aromatica RCB]
 gi|71847796|gb|AAZ47292.1| conserved hypothetical protein [Dechloromonas aromatica RCB]
          Length = 645

 Score = 43.0 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAIS-FLSPGRGFRRASY 61
          +K+  L I+ F+++   S  +   A  +  +G NG GKT +L+A+S         RR   
Sbjct: 1  MKLTQLRINNFQSFGPTSTIIDLSA-MSFLLGPNGTGKTAVLQALSRLFGFDPALRRVRR 59

Query: 62 AD 63
          +D
Sbjct: 60 SD 61


>gi|25028591|ref|NP_738645.1| putative ABC transporter ATP-binding protein [Corynebacterium
           efficiens YS-314]
 gi|259507648|ref|ZP_05750548.1| antibiotic ABC superfamily ATP binding cassette transporter
           protein, ATP-binding [Corynebacterium efficiens YS-314]
 gi|23493877|dbj|BAC18845.1| putative ABC transporter ATP-binding protein [Corynebacterium
           efficiens YS-314]
 gi|259164827|gb|EEW49381.1| antibiotic ABC superfamily ATP binding cassette transporter
           protein, ATP-binding [Corynebacterium efficiens YS-314]
          Length = 544

 Score = 43.0 bits (100), Expect = 0.078,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 19/127 (14%)

Query: 237 DQSFCALKEEYAKKLFDGRKM-----DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGE 291
           D     + E + + L    ++     ++     + G   +D+     D+++ I   S G+
Sbjct: 113 DNPPPDIAERFDEALSRAEELGVWNLEARIEEIVAGLGLADV-----DRSVPIRALSGGQ 167

Query: 292 QKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTD 351
           ++   + + L               L+LDE + HLD++  + L   +T     + +   D
Sbjct: 168 RRRFALAVLLLE---------PHDALILDEPTNHLDDNAVDFLINELTSFKGPVLIASHD 218

Query: 352 KSVFDSL 358
           +   D++
Sbjct: 219 RFFLDAV 225


>gi|299483502|gb|ADJ19583.1| SMC domain-containing protein [Treponema primitia ZAS-2]
          Length = 887

 Score = 43.0 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 6   KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           +I  L I  FR + S    +FD ++T   G NG GK++  E + +   G
Sbjct: 84  RIYELEIGPFRGFTSQEHFIFDKKYTFLYGPNGSGKSSFCEGLEYALLG 132


>gi|296166197|ref|ZP_06848638.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
          ATCC BAA-614]
 gi|295898445|gb|EFG78010.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
          ATCC BAA-614]
          Length = 688

 Score = 43.0 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNYASL-RLVFDA----QHTIFVGDNGVGKTNILEAISFLSPG 53
          +K+  + +  FR +  +  + F        T+  G NG GKT +L A +++  G
Sbjct: 1  MKLHRIRLENFRQFQGISEIEFAQDKQQNVTLIWGANGAGKTTLLNAFTWVLYG 54


>gi|260912248|ref|ZP_05918800.1| DNA repair protein RecN [Prevotella sp. oral taxon 472 str. F0295]
 gi|260633682|gb|EEX51820.1| DNA repair protein RecN [Prevotella sp. oral taxon 472 str. F0295]
          Length = 553

 Score = 43.0 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 80/256 (31%), Gaps = 34/256 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F     L + F +  ++  G+ G GK+ IL A+  +   R     +     +
Sbjct: 2   LTQLYIKNFALIDELDMDFRSGFSVITGETGAGKSIILGALGLVMGQR-----ADVKSIK 56

Query: 67  IGSPSFFST-------------FARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRV 112
            G+                   F   E      D  I+ E       R    +    + +
Sbjct: 57  HGAEKCTVEAHFNIAHYGLEPFFESNELDYDANDCIIRREISASGKSRAFINDAPAPLTL 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDFERL---MR 167
           V EL +  R+  +      +       +   +D +    A    +      ++     +R
Sbjct: 117 VKELGE--RLIDIHSQHQNLLLNKEDFQLNVIDLIAQNSAQLAEYTESYDKYKAAEKELR 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
               L++       +     A++ E   K+   + E +   S ++           IK +
Sbjct: 175 QLEELVSGNKEREDYLRFQHAELEE--AKLEDGQQEALEQESEMMSH------AEDIKAA 226

Query: 228 LTGFLDGKFDQSFCAL 243
           L   ++G   +S   L
Sbjct: 227 LYQTVEGIDGESDSML 242


>gi|229494647|ref|ZP_04388407.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229318440|gb|EEN84301.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
          Length = 192

 Score = 43.0 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +  FRN  ++ +    +HT+ VG+N  GK+N+L A+  
Sbjct: 2  VKNFRNLVNIDVPLT-RHTVIVGENRSGKSNLLHAMRL 38


>gi|154149903|ref|YP_001403521.1| SMC protein-like protein [Candidatus Methanoregula boonei 6A8]
 gi|153998455|gb|ABS54878.1| SMC protein-like protein [Methanoregula boonei 6A8]
          Length = 673

 Score = 43.0 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 69/196 (35%), Gaps = 21/196 (10%)

Query: 188 AQMAELGVKINI--ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245
            Q+  +   I     R+  +N       E +Q      IK+ L   +    ++    L++
Sbjct: 460 EQLRSINESIRQIDLRLNELNRQRKKFEEEIQGAKGGSIKMELALQVTTVLNEYAKELQK 519

Query: 246 EYAKKLFDGR--------KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +    L D          + D   ++ LI  + + ++ D     I     S GE+++  V
Sbjct: 520 QKINYLGDNILSCFNRLIRKDDYVQKILIDENYNIILYDADGNTIPKNLLSAGEKEIFAV 579

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL-FRIVTDIGSQIFMTGTDKSVFD 356
            +       ++ T+G     ++D     LD + R  L        G Q+ +  TD  +  
Sbjct: 580 SL----LWGLTLTSGRQLPFIIDTPLGRLDSEHRGNLVMDFFQHAGDQMIIFSTDTEI-- 633

Query: 357 SLNETAKFMRISNHQA 372
                 ++ RI   Q 
Sbjct: 634 ----DKEYFRILQPQI 645



 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 9/58 (15%)

Query: 5  IKIKFLNISEFRNYASLR-LVFDA--------QHTIFVGDNGVGKTNILEAISFLSPG 53
          + +  L +   R +     L F             +  G NG GKT + E+I     G
Sbjct: 1  MLLHSLTLENIRIFKGKNRLDFTPILTSDVKKPIILIGGKNGAGKTTLFESILLCLYG 58


>gi|134093946|ref|YP_001099021.1| hypothetical protein HEAR0700 [Herminiimonas arsenicoxydans]
 gi|133737849|emb|CAL60894.1| hypothetical protein HEAR0700 [Herminiimonas arsenicoxydans]
          Length = 486

 Score = 43.0 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          ++  L  +  +      + F  + T   G+NG GKT++L
Sbjct: 22 RLDKLTTNNIKGIGDKTISFPHRITALCGENGAGKTSLL 60


>gi|66391264|ref|YP_238589.1| ORF009 [Staphylococcus phage Twort]
 gi|62637194|gb|AAX92305.1| ORF009 [Staphylococcus phage Twort]
          Length = 636

 Score = 43.0 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 10/116 (8%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA-QHTIFVG---------DNGVGKTNILEAISFLSPGR 54
           +K K + I  F +     L  D     +  G          NGVGK+ ++ AI++   G+
Sbjct: 2   VKFKKVEIKNFMSIKDATLELDNQGLILIEGINKTNDSFEANGVGKSTLVSAITYSLYGK 61

Query: 55  GFRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
             +     DV         S     +  E    I    +  ++++   L  N   I
Sbjct: 62  TEKGLKADDVINKKEKKNTSVKLYFDIGEDNYIIERYRKDEENKNKVKLFCNGKEI 117


>gi|308050614|ref|YP_003914180.1| DNA replication and repair protein RecN [Ferrimonas balearica DSM
          9799]
 gi|307632804|gb|ADN77106.1| DNA replication and repair protein RecN [Ferrimonas balearica DSM
          9799]
          Length = 556

 Score = 43.0 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L ++ F     L L F    T   G+ G GK+  ++A+S    GRG      A + R
Sbjct: 2  LTQLTVANFAIVKFLELDFAPGMTTITGETGAGKSIAIDALSLCLGGRG-----EAGMVR 56

Query: 67 IGSPSF 72
           G+   
Sbjct: 57 PGAERA 62


>gi|300691612|ref|YP_003752607.1| chromosome segregation protein SMC [Ralstonia solanacearum PSI07]
 gi|299078672|emb|CBJ51330.1| Chromosome segregation protein SMC [Ralstonia solanacearum PSI07]
          Length = 1171

 Score = 43.0 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
          +++  + ++ F+++          Q    VG NG GK+NI++A+   L   R    R  S
Sbjct: 1  MRLSSIKLAGFKSFVDPTNFHVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRAAELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|269124446|ref|YP_003297816.1| DNA sulfur modification protein DndD [Thermomonospora curvata DSM
           43183]
 gi|268309404|gb|ACY95778.1| DNA sulfur modification protein DndD [Thermomonospora curvata DSM
           43183]
          Length = 664

 Score = 43.0 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 8/125 (6%)

Query: 5   IKIKFLNISEFRNYA---SLRLVFDAQ--HTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           + +  + +  F  Y    SL L  +      +  G NG GKT +L+AI     G   R +
Sbjct: 1   MLLHNVTLKNFGAYKGEQSLELTTEPGRPIILIGGLNGCGKTTLLDAIQLALYGARARTS 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
                      S+       +     A ++++     +   R  ++          + + 
Sbjct: 61  GRG---NRSYESYLRDSINRQANPKHAHVTVEFSLAIEGRERRYKVRRSWEANGKNVREF 117

Query: 120 LRISW 124
           L +  
Sbjct: 118 LNVLV 122



 Score = 36.8 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 19/180 (10%)

Query: 198 NIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRK- 256
              R ++++          QK         +  + D +   +    K    ++  +  + 
Sbjct: 456 RRRREQLLSERERAYKGRAQKLAKAEAAARIISYAD-RVRDTLEKFKTALLRRHINRLEV 514

Query: 257 --MDSMSRRTLIGPHRSDLIVDY----------CDKAITIAHGSTGEQKVVLVGIFLAHA 304
             +DS +R         DL +D            D+ +  +  S GE++++ V +     
Sbjct: 515 AVLDSFNRLMRKSELVRDLRIDTEKFTLTLIGPDDEKLAPSRLSAGERQLLAVSL----L 570

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGTDKSVFDSLNETAK 363
             ++   G     ++D     LD   R  L          Q+ +  TD+ + + L    K
Sbjct: 571 WGLARVAGNRLPSVIDTPLGRLDSRHREHLVERYFPHASHQVLLLSTDEEIDEYLLGKLK 630


>gi|227432279|ref|ZP_03914273.1| DNA repair ATPase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351946|gb|EEJ42178.1| DNA repair ATPase [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 787

 Score = 43.0 bits (100), Expect = 0.079,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 65/160 (40%), Gaps = 16/160 (10%)

Query: 207 ALSSLIMEYVQKE-NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSM-SRRT 264
            L+    EY+ K+ +   I  +L      +F +    L  +Y +KL  GR ++    + T
Sbjct: 637 ELTQQFSEYLAKKMSVKWINQALQDASQNRFPK-MQQLATDYFQKLTAGRYVNIQFDKNT 695

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
           L             +        STG Q+ + V   LA +++I +       +L+D+   
Sbjct: 696 LQVVRNDRQKFSVVE-------LSTGTQEQLYVAFRLALSQVIKDIINMP--ILVDDGFV 746

Query: 325 HLDEDKRNALFRIVTDIG--SQI--FMTGTDKSVFDSLNE 360
           + D  ++  +  ++TDIG   Q+  +        FD + E
Sbjct: 747 NFDLSRKQNVIALLTDIGRNQQVIYWTAAIHNEHFDKVIE 786



 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          +KIK L IS F  ++           +  G N  GKT +
Sbjct: 1  MKIKRLEISGFGRWSQEAFDLSDGLQVIFGQNESGKTTL 39


>gi|300741216|ref|ZP_07071237.1| DNA repair protein RecN [Rothia dentocariosa M567]
 gi|300380401|gb|EFJ76963.1| DNA repair protein RecN [Rothia dentocariosa M567]
          Length = 569

 Score = 43.0 bits (100), Expect = 0.080,   Method: Composition-based stats.
 Identities = 61/387 (15%), Positives = 122/387 (31%), Gaps = 62/387 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I I+ L I         RL      ++  G+ G GKT ++ A+  L   R      
Sbjct: 1   MIEEIHIRDLGI-----ITDARLPLQPGLSVLTGETGAGKTMVVTALGMLLGARS----- 50

Query: 61  YADVTRIGSPSFFSTFAR-----------VEGMEGLAD------ISIKLETRDDRSVR-C 102
            A   R G+ S  +               VE + G AD        + L    + S R  
Sbjct: 51  DATSVRQGAKSALAEAIVRLPQEHKALTLVEEVGGTADPVDEKTSELLLARTVNASGRSR 110

Query: 103 LQIND--VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF----------- 149
             +      +  + ++ + L         D++    + E+RR LD               
Sbjct: 111 AHVGGCTAPVGKLSDIGQTLVAV--HGQSDQLRLKSASEQRRALDLYAGEKLFDLLEKYQ 168

Query: 150 AIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALS 209
               R+R    +++ +         E          I++   + G    +   E I  ++
Sbjct: 169 HTYERYRVAAAEYKEVRENSRARALEAQSLQGALEEIDSVNPQTGEDEALK-NESIKLMN 227

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD-----SMSRRT 264
              +            LS + + +G  + +  +L +     L      D        R  
Sbjct: 228 VEALRT--ATGVAAAALSGSEYTEGT-EANVLSLLDVAHTSLLGQADADSDIENLAQRVN 284

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLD---- 320
            +    +D+  D      + +  S G +++  V    A  + ++   G     +L+    
Sbjct: 285 ELLVLATDVATDIS--TYSTSLDSEGPERLAQVQERRAQLKNLTRKYGADIAEVLEWAEE 342

Query: 321 --EISAHL--DEDKRNALFRIVTDIGS 343
             +    L  D  ++ +L + +TD+  
Sbjct: 343 SRDRLTRLVDDPARQESLEQELTDLRQ 369


>gi|291546963|emb|CBL20071.1| hypothetical protein CK1_20480 [Ruminococcus sp. SR1/5]
          Length = 415

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 79/279 (28%), Gaps = 39/279 (13%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDA----QHTIFVGDNGVGKTNILEAISFLSPGRG---- 55
           ++ + L IS F  YA    + F         +  GD G GKT I +AI+F   GR     
Sbjct: 1   MRPEKLTISAFGPYADKTEIDFSKLGEGGLYLITGDTGAGKTTIFDAITFALYGRASGEV 60

Query: 56  -----FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
                FR     D     + +F       +G       S +      R           +
Sbjct: 61  RESAMFRSKYAKD----STETFVELVFSYQGKIYHVRRSPEYMAPKKRGT------GQTL 110

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMER---RRFLDRMVFAIDPRHRRRMIDFERLM- 166
           R  +          + P   +  +          + L                DF++L+ 
Sbjct: 111 RKAE-------AQLIYPDDRQPVTKAKDVTVAVEQLLGLSYDQFTQIAMIAQGDFQKLLL 163

Query: 167 ---RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH 223
                R  +  +  F +     I+ ++ +  +       EM  +++  +     +     
Sbjct: 164 AGTTQRGEIFRQL-FHTGLYQQIQMKLKDASIARYKEYDEMRRSIAQYLDGVKTETASWQ 222

Query: 224 IKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
                      KF+       E   + L  G   +   R
Sbjct: 223 EAEEFDELKKIKFEGKLERSLELLKQFLEYGEAQEKELR 261


>gi|226951841|ref|ZP_03822305.1| ATP binding site [Acinetobacter sp. ATCC 27244]
 gi|226837381|gb|EEH69764.1| ATP binding site [Acinetobacter sp. ATCC 27244]
          Length = 460

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 123/396 (31%), Gaps = 69/396 (17%)

Query: 5   IKIKFLNISE---FRNYASLRLVFDA---QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           ++I+ +       FR    L+L F       T+ +GD   GKT +L+ I         R 
Sbjct: 1   MQIESVQFKHVGMFR---DLKLEFFPAQHPITLILGDQATGKTTVLKNIYHALSWFSAR- 56

Query: 59  ASYADV------TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
             Y D+                  A+V+    L+    +L +    S     IN      
Sbjct: 57  --YKDIRTAGVVIADQDIMLTRLQAKVQIQVQLSS---ELNSNLTESSSAQAIN--TQSC 109

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF------AIDPRHRRRMIDF---E 163
           + +L K      +         G+S    + LD+MV         DP     +I +   E
Sbjct: 110 IWKLFKTYNNQGV---------GISQVETQQLDQMVSLYQKTNQQDPLFGLPLIAYYPAE 160

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIE-------------AQMAELGVKINIARVEMINALS- 209
           R ++  N             S+ +                 E+    N     ++  L  
Sbjct: 161 RFVQEINLQSKNVPGILQKMSAYDLTAIPYTTFSRFFEWFREISDVENAHSAHIVRRLMG 220

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
           +   +  Q E    ++  L          +  ALK+       +    D   +       
Sbjct: 221 NDFNQQNQSEMLEQLQQELVNHPKQLSAPNLYALKKSLTTVFPE--LKDIYVQY----VP 274

Query: 270 RSDLIVDYCDKAITIAHGSTGEQKVVLVG------IFLAHARLISNTTGFAPILLLDEIS 323
           +  L+V Y D+ +     S  ++ ++ +       + L +            ILL+D+I 
Sbjct: 275 KLQLMVRYHDQVLPFQQLSASQKTLIALVGDISRRLCLLNQNCFEPCLEGEGILLIDQID 334

Query: 324 AHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDS 357
             LD++    +   +       QI  TG    + + 
Sbjct: 335 TQLDQNLCAEILERLHQAFPRLQIIATGNRDELLEH 370


>gi|320586130|gb|EFW98809.1| nuclear condensin complex subunit [Grosmannia clavigera kw1407]
          Length = 1180

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           +++  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRVIEIIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKKKSPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|195953156|ref|YP_002121446.1| SMC domain protein [Hydrogenobaculum sp. Y04AAS1]
 gi|195932768|gb|ACG57468.1| SMC domain protein [Hydrogenobaculum sp. Y04AAS1]
          Length = 514

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 86/267 (32%), Gaps = 41/267 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADVT 65
           IK + I  +    S  + F     +  G++G GK+ +++AI   L        +S     
Sbjct: 2   IKSIKIESYLLLKSQYIEFKEGLNVITGESGAGKSMLMDAIKFCLGLLAS---SSDNASV 58

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                       R E   G +   I   T + R+V       V+ +     +K  +    
Sbjct: 59  ---EIEINEDIVRRETKAGKSKFYINGMTSNQRTVLETFGQSVMFQAQSSQSKIFKKH-- 113

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR----GRNRLLTEGYFDSS 181
                 I       +R+  + +       +   +   E L++     +  L  E   +  
Sbjct: 114 --HQLEILDKDKDIQRKKKEFV------EYFDALKQKEELLKDLLFQKESLEKEIEKNKE 165

Query: 182 WCSSIE---------------AQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIK- 225
              S+E               A+  +   KIN     ++NAL       + K N+   + 
Sbjct: 166 LIESLEALNLEKDTYNDIKLKAEELQHAEKINTYIQNVLNALEYSDHSAISKINYSISQI 225

Query: 226 ---LSLTGFLDGKFDQSFCALKEEYAK 249
              LS    L    D+   ALK++  +
Sbjct: 226 NQALSYKEDLQKAIDK-LNALKDQLLE 251


>gi|153955115|ref|YP_001395880.1| ABC transporter ATPase [Clostridium kluyveri DSM 555]
 gi|219855551|ref|YP_002472673.1| hypothetical protein CKR_2208 [Clostridium kluyveri NBRC 12016]
 gi|146347973|gb|EDK34509.1| Predicted ABC transporter, ATPase component [Clostridium kluyveri
           DSM 555]
 gi|219569275|dbj|BAH07259.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 263

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 12/83 (14%)

Query: 286 HGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--S 343
           H S GE++ V +   LA             +L+LDE    LD   +  L   +  +    
Sbjct: 140 HLSGGEKRKVAIACVLAL---------NPEVLVLDEPMNGLDPRTQRWLAEFLVKLNKMG 190

Query: 344 QIFMTGT-DKSVFDSLNETAKFM 365
           +  +T T +  +   +++ A   
Sbjct: 191 KTLITSTHNLELVQEISKRAVLF 213


>gi|119944675|ref|YP_942355.1| DNA repair protein RecN [Psychromonas ingrahamii 37]
 gi|119863279|gb|ABM02756.1| DNA repair protein RecN [Psychromonas ingrahamii 37]
          Length = 558

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L I  F     L L F    T   G+ G GK+  ++A+      R     + A++ R
Sbjct: 2  LSHLTIQHFAIVQFLELEFHQGMTTITGETGAGKSIAIDALGLCLGDR-----ADANMIR 56

Query: 67 IGSPSFFS 74
          +G+     
Sbjct: 57 VGTEQAEV 64


>gi|67526323|ref|XP_661223.1| hypothetical protein AN3619.2 [Aspergillus nidulans FGSC A4]
 gi|40740637|gb|EAA59827.1| hypothetical protein AN3619.2 [Aspergillus nidulans FGSC A4]
 gi|259481852|tpe|CBF75760.1| TPA: subunit of MRX complex (Eurofung) [Aspergillus nidulans FGSC
          A4]
          Length = 1319

 Score = 43.0 bits (100), Expect = 0.081,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I   ++  F N  S  + F    T+ VG NG GKT I+E + + + G
Sbjct: 23 HIAIFSVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 70


>gi|300114988|ref|YP_003761563.1| SMC domain-containing protein [Nitrosococcus watsonii C-113]
 gi|299540925|gb|ADJ29242.1| SMC domain protein [Nitrosococcus watsonii C-113]
          Length = 821

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMT 348
           +   + + + LA  RL +     A  ++LD++    D D R  +  ++       QI + 
Sbjct: 572 QVHTLALSLRLAAIRLFNKQ---ARTIILDDVVTSYDADHRKNIAAMLAKHFGDFQIILA 628

Query: 349 GTDKSVFDSLNET 361
             D+  F  L + 
Sbjct: 629 THDEQFFSLLQDH 641


>gi|291459859|ref|ZP_06599249.1| DNA repair protein RecN [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417649|gb|EFE91368.1| DNA repair protein RecN [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 552

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 19/194 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++ +        + F     I  G+ G GK+ +++A++      G  + +  D+ R
Sbjct: 2   LLSLHVRDMALIDRADVEFGEGLNILTGETGAGKSILIDAVNL-----GLGQKANRDMIR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLADISIK-----LETRDDRSVRCLQINDVVI--RVVD 114
            G  S      FS     E      +I  +     +  +       +++ND  +    + 
Sbjct: 57  SGRESASVELLFSLSEEEERRIRDLEIEAEDGVLLIRRKISEKRSEIRVNDQAVTLSKLR 116

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
           +L + L           +       R    FL++    +  R       F    + R  L
Sbjct: 117 KLTEQLIDIHGQHEHQSLLREGEHLRILDSFLEKETGELRRRASESCRRFREAAKLRKSL 176

Query: 173 LTEGYFDSSWCSSI 186
             +          +
Sbjct: 177 DMDEASRKRELDFL 190


>gi|255323303|ref|ZP_05364437.1| ABC transporter ATP-binding protein YojI [Campylobacter showae
           RM3277]
 gi|255299595|gb|EET78878.1| ABC transporter ATP-binding protein YojI [Campylobacter showae
           RM3277]
          Length = 527

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 16/105 (15%)

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           V   D   +  + S G++K       LA    +         L+LDE +A  D + R   
Sbjct: 433 VSVKDGNFSTLNLSQGQKK------RLAMVATLLENRK---FLILDEWAADQDPEFRRHF 483

Query: 335 F-RIVTDIGSQ---IFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           +   + ++ +Q   +F    D + FD+ +   K   I N Q   +
Sbjct: 484 YTEFLPELKAQGYTVFAISHDDAYFDAAD---KIYEIRNGQIALV 525


>gi|298347016|ref|YP_003719703.1| DNA recombination and repair protein [Mobiluncus curtisii ATCC
          43063]
 gi|298237077|gb|ADI68209.1| DNA recombination and repair protein [Mobiluncus curtisii ATCC
          43063]
          Length = 575

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++ L I      +S+ L F    T+  G+ G GKT +L ++ +L   +
Sbjct: 2  LESLRIENLGTISSVALEFSPGFTVITGETGAGKTMLLTSLDWLLGAK 49


>gi|239814178|ref|YP_002943088.1| ATPase, RecF-like protein [Variovorax paradoxus S110]
 gi|239800755|gb|ACS17822.1| ATPase, RecF-like protein [Variovorax paradoxus S110]
          Length = 390

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +    + T+  G NG GK+++  A+  L+
Sbjct: 2  LSALAIANYRSLRQLTVPLG-RLTVVTGANGSGKSSVYRAMRLLA 45


>gi|254470486|ref|ZP_05083890.1| ATP binding protein [Pseudovibrio sp. JE062]
 gi|211960797|gb|EEA95993.1| ATP binding protein [Pseudovibrio sp. JE062]
          Length = 374

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI---LEAISFLSPGR 54
          +  + I  +R+   L +   A   +FVG+NGVGKTN+   LE +   + GR
Sbjct: 6  LSAIGIENYRSVHKLFMRVGA-VNVFVGNNGVGKTNLYKSLELLQQAALGR 55


>gi|19074461|ref|NP_585967.1| RAD18-LIKE RECOMBINATION AND DNA REPAIR PROTEIN [Encephalitozoon
           cuniculi GB-M1]
 gi|19069103|emb|CAD25571.1| RAD18-LIKE RECOMBINATION AND DNA REPAIR PROTEIN [Encephalitozoon
           cuniculi GB-M1]
          Length = 980

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 11/161 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR-GF--RRASYAD 63
           I  + + +F  +  L +      TI  G NG GK+ I+ AI  +   R     R +S+ D
Sbjct: 10  IVSVELIKFMCHDHLLISLRKPLTIVSGCNGSGKSAIMVAIGLVFGQRASHLERGSSFKD 69

Query: 64  VTRIGSPSFFSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
           + +    +               +    +I +E R         I +   RV     + L
Sbjct: 70  LIKSKESNAAVRIVLENHRGFRKEFFGETIIIEKRIGMKSATTSIMNGERRVWSTRREDL 129

Query: 121 RISWLVPSMDRIFSGLSME--RRRFLDRMVFAIDPRHRRRM 159
                      +     +    +    R +  +DP     +
Sbjct: 130 ETVL---EFFALRFENPLNFLTQEQAKRFLSTMDPEMLYEL 167


>gi|194337597|ref|YP_002019391.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310074|gb|ACF44774.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 369

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +  +N+  F++     +       + +G NG GK+NI+
Sbjct: 4  LGRINLEGFKSIKKTDIELH-NLNVLIGANGAGKSNII 40


>gi|194337801|ref|YP_002019595.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194310278|gb|ACF44978.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 580

 Score = 43.0 bits (100), Expect = 0.082,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-----RGFRRAS 60
          I  L +  F+N       F  +  + VG N  GK+ +L+A++          R  RR S
Sbjct: 2  ITRLTLQNFKNVGEQTYDFT-RFDLLVGRNNSGKSTVLQALAIWQYCVDEFHRSARRGS 59


>gi|312375359|gb|EFR22748.1| hypothetical protein AND_14267 [Anopheles darlingi]
          Length = 794

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          K+  + +  F  +  + + F+ +  + VG NG GK+ IL A+
Sbjct: 50 KVLRMVLKNFMCHRHMVVEFNKRANLLVGKNGSGKSAILAAM 91


>gi|307822691|ref|ZP_07652922.1| SMC domain protein [Methylobacter tundripaludum SV96]
 gi|307736295|gb|EFO07141.1| SMC domain protein [Methylobacter tundripaludum SV96]
          Length = 1147

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 13/63 (20%)

Query: 5  IKIKFLNISEFRNYASLR----LVF------DAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +KI  +    F+N  SL     + F      D       G NG GK++IL+AI+    G 
Sbjct: 1  MKILNI---HFKNINSLEGESRIDFEQSPFSDTGVFAITGPNGSGKSSILDAITLGLYGE 57

Query: 55 GFR 57
           FR
Sbjct: 58 TFR 60


>gi|190341497|gb|ACE74825.1| RecN [Enterobacter aerogenes]
          Length = 543

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 77/239 (32%), Gaps = 44/239 (18%)

Query: 19  ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS--PSFFSTF 76
             L + F +  T   G+ G GK+  ++A+     GR     + AD+ R G+      + F
Sbjct: 4   RELEIDFHSGMTAITGETGAGKSIAIDALGLCLGGR-----AEADMVRRGASRADLCARF 58

Query: 77  ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGL 136
           A  +       +  + +    R     ++     R    +N                + +
Sbjct: 59  ALKDTPAAQRWLE-ENQLESGRECLLRRVISADGRSRGFING---------------TAV 102

Query: 137 SMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
            + + R L +++  I  +H               +LLT+     +       + A    +
Sbjct: 103 PLSQLRELGQLLIQIHGQHAH-------------QLLTKAEHQKTLLDGYTGEYAL--TQ 147

Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ------SFCALKEEYAK 249
               R    +     + ++ Q+      +  L  +   + ++       F  + EEY +
Sbjct: 148 RMAERYRQWHQSCRELAQHQQQSQERAARADLLQYQLKELNEFNPLPGEFEQIDEEYKR 206


>gi|218905695|ref|YP_002453529.1| RecF/RecN/SMC N domain, putative [Bacillus cereus AH820]
 gi|218539280|gb|ACK91678.1| RecF/RecN/SMC N domain, putative [Bacillus cereus AH820]
          Length = 875

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 7  IKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPG 53
          IK + I+ FR Y+     F           +  G NG GKT++L+A+ +   G
Sbjct: 8  IKKVIINNFRGYSYGTFEFFKDKDEKRGLILLGGPNGYGKTSLLDAVEWCLSG 60


>gi|94265041|ref|ZP_01288809.1| DNA repair protein RecN [delta proteobacterium MLMS-1]
 gi|94269545|ref|ZP_01291491.1| DNA repair protein RecN [delta proteobacterium MLMS-1]
 gi|93451176|gb|EAT02093.1| DNA repair protein RecN [delta proteobacterium MLMS-1]
 gi|93454474|gb|EAT04762.1| DNA repair protein RecN [delta proteobacterium MLMS-1]
          Length = 581

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +K L I        LRL          G+ G GK+ IL+AI  L+ GR     + AD  R
Sbjct: 2  LKELWIKNLALIEELRLEPGGGLIALTGETGAGKSIILQAIHLLAGGR-----ASADWVR 56

Query: 67 IGSPSF 72
           G+   
Sbjct: 57 GGADQA 62


>gi|320164391|gb|EFW41290.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1096

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 49/267 (18%), Positives = 96/267 (35%), Gaps = 40/267 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  +N+ +F  Y+   +       + +G NG GK+ I+ AI   + G G      ADV  
Sbjct: 64  IVRVNMIDFVTYSRCEVFPGPHLNVVIGPNGTGKSTIICAI---AIGLG------ADVKL 114

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI-------------NDVVI--R 111
           +G       + R       A + ++L   D  +    +I             N+  +  +
Sbjct: 115 LGRQESVRQYIRRHDGVKSATLEVELFNPDGNNWIIRRIIALSPSPESQFFLNNKSVTHK 174

Query: 112 VVDELNKHLRISW-----LVPSMDRIF--SGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
            + EL   L I +      +P    +        E     +R V   +  + + M +  +
Sbjct: 175 EIRELVGKLNIDFNNRTQFLPQDRVVEFAKLSPEELLLTTERDVSDNETLYNQHM-ELCK 233

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIA--RVEMINALSSLIMEYVQKENFP 222
           L + R  +      +S     ++ + AEL  ++     R +    +     E +QK+  P
Sbjct: 234 LFKDRQDIEKRLEENSKEHLLLQRKNAELEQQVRQYEDREQYRTQI-----ELIQKK-RP 287

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAK 249
            ++      +  +  +   A KEE  K
Sbjct: 288 WVEYEAARSVFIQNKEQLTAAKEELRK 314


>gi|326783309|ref|YP_004323745.1| recombination endonuclease subunit [Prochlorococcus phage Syn33]
 gi|310005256|gb|ADO99645.1| recombination endonuclease subunit [Prochlorococcus phage Syn33]
          Length = 573

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 85/275 (30%), Gaps = 39/275 (14%)

Query: 22  RLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVE 80
            + F ++  T+ VG NG GK+ +L+A+ F   G+ FR+ +   +    +           
Sbjct: 21  EIDFCESSSTLIVGSNGAGKSTMLDALCFALFGKAFRKINKPQLVNSINEKDAKVEVTFS 80

Query: 81  GMEGLADISIKLETRDDRSVRCLQINDVVIRVVD------------ELNKHLRISW---- 124
             +    +   ++       +  ++ D      D                  ++      
Sbjct: 81  IGKEEYRVFRGIKPNAFELYKNNKLVDQDAATKDTQKYLEQSVLKLNYKSFTQVVILGSS 140

Query: 125 -LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWC 183
             VP M       +  RR  ++ ++            +   L++ R R       D S  
Sbjct: 141 TFVPFMQL----AASHRREVIEDLLD------INIFSNMNGLLKDRIRASQGQSKDCSHM 190

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL-------SLTGFLDGKF 236
            +    +AE  V      +  +  ++    E  QK+   ++               D K 
Sbjct: 191 LT----LAEGKVHAQKKLINSLEEVNQNRQEEKQKKYDENLSFMKKVHEDKYIVEKDIKD 246

Query: 237 DQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
            +S     +  AK L   R+  S  +  L    + 
Sbjct: 247 TESKIGDYDAAAKTLSSLRQGQSDRKSQLKIISKD 281


>gi|162451072|ref|YP_001613439.1| hypothetical protein sce2800 [Sorangium cellulosum 'So ce 56']
 gi|161161654|emb|CAN92959.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 346

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 6   KIKFLNISEFRNYAS-LRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           KI  + + +FR     L L         +++ +  G NG GKT++LEA+  L  G+   R
Sbjct: 13  KIHRVRVEKFRRIQEPLELDLTSPKGVPSRNVVLAGPNGCGKTSVLEAV-LLGLGQE--R 69

Query: 59  ASYADVTRIGSPSFFSTF----ARVEGMEGLADISIKLETRDDRS 99
               D+ +      + T     ARVE    + D  +    R   +
Sbjct: 70  LIVRDLEKAHRAQHWRTELPEGARVELDVTIDDGPLMTWIRTREA 114


>gi|118472934|ref|YP_890879.1| sulfate/thiosulfate import ATP-binding protein CysA [Mycobacterium
           smegmatis str. MC2 155]
 gi|118174221|gb|ABK75117.1| sulfate/thiosulfate import ATP-binding protein CysA [Mycobacterium
           smegmatis str. MC2 155]
          Length = 347

 Score = 43.0 bits (100), Expect = 0.083,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 57/195 (29%), Gaps = 36/195 (18%)

Query: 18  YASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTF 76
             ++ L  D       +G +G GKT++L AI+ L+P             RIG        
Sbjct: 20  LDNVSLHIDPGQMVALLGPSGCGKTSLLRAIAGLNPL-------DRGAIRIGESDVTMVP 72

Query: 77  ARVE--GMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
           AR+   GM           T  +     L IN        +             +  +  
Sbjct: 73  ARLRPIGMVFQHYALFPNMTVAENISFPLTINKQRRAERAQRVG---------ELLELI- 122

Query: 135 GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELG 194
                        + A+  R+  ++   +   + R  L      +      ++  +A L 
Sbjct: 123 ------------GMTALADRYPNQLSGGQ---QQRVALARALAPEPDVL-LLDEPLAALD 166

Query: 195 VKINIARVEMINALS 209
             I     + I  + 
Sbjct: 167 AAIRNDLRDEIRRIQ 181


>gi|316997122|dbj|BAJ52710.1| hypothetical protein [Streptomyces sp. TA-0256]
          Length = 405

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +  L +S F+++ +         T+F G +G GK++ L+A   L+   G
Sbjct: 34 VTELRLSAFKSHRNAAFALGP-LTLFRGPSGSGKSSALQAYEVLARLAG 81


>gi|302540427|ref|ZP_07292769.1| putative nuclease sbcCD subunit C [Streptomyces hygroscopicus ATCC
           53653]
 gi|302458045|gb|EFL21138.1| putative nuclease sbcCD subunit C [Streptomyces himastatinicus ATCC
           53653]
          Length = 431

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 19/203 (9%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFD----AQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           +++  L ++ F  + A+  + FD    A   +  G  G GKT++L+A+ +   G+  G R
Sbjct: 1   MRLHRLTVTAFGPFGATQHVDFDELSAAGLFLLHGPTGAGKTSVLDAVCYGLYGQVPGAR 60

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDVVIRVVDEL 116
           + S   +    +     T   +E   G   + I       R   R   +     + +  +
Sbjct: 61  QGSGLSLRSDHADPLTPTEVVLELTVGERRLEITRRPEQPRPKKRGTGVTKEKAQSLLRV 120

Query: 117 NKHLRISW--LVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR----GRN 170
                 +W  L  S   I      E  + L                DF R +R     R 
Sbjct: 121 YDSDSRTWKALSRSHQEI----GAEIEQLLGMSRDQFCQVVLLPQGDFARFLRADEPARA 176

Query: 171 RLLTEGYFDSSWCSSIEAQMAEL 193
           +LL +  FD+S  +++E ++AEL
Sbjct: 177 KLLGKL-FDTSRFAAVEERLAEL 198


>gi|301757876|ref|XP_002914785.1| PREDICTED: structural maintenance of chromosomes protein 5-like
           [Ailuropoda melanoleuca]
          Length = 1106

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 32/102 (31%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y    +       + +G NG GK++I+ AI     G+         V  
Sbjct: 57  IVRIVMENFLTYDVCEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 116

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                       +E      ++ I  E    ++     IN  
Sbjct: 117 FVKRGCSKGMVEIELFRTSGNLVITREIDVAKNQSSWFINKK 158


>gi|262274825|ref|ZP_06052636.1| ATPase involved in DNA repair [Grimontia hollisae CIP 101886]
 gi|262221388|gb|EEY72702.1| ATPase involved in DNA repair [Grimontia hollisae CIP 101886]
          Length = 616

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 8/185 (4%)

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARV--EMINALSSLIMEYVQKENFPHIKLSLTGF 231
            +      +   +E+   E    +  AR    + +       +     N  +  L L  F
Sbjct: 393 KKEKLIIEYHDLLESAKRETRSALEAARQIQRLHDKHRDQSNKDHSISNAQNAILLLDKF 452

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK-AITIAHGSTG 290
            +         L++E+ +      + + +     I P   D+ +       I     S G
Sbjct: 453 AEQLTKARVKQLEDEFVQSYKKLARKEDLQLSAAINPTTFDVELMDNHGIKINRKAMSAG 512

Query: 291 EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTG 349
           E+++  + I       +  T+G    +++D     LD   R+ L          Q+ +  
Sbjct: 513 EKQIYAISI----LEALGRTSGRKLPIIIDTPLGRLDSHHRDKLVENYFPTASHQVVILS 568

Query: 350 TDKSV 354
           TD  +
Sbjct: 569 TDTEI 573


>gi|224823695|ref|ZP_03696804.1| SMC domain protein [Lutiella nitroferrum 2002]
 gi|224604150|gb|EEG10324.1| SMC domain protein [Lutiella nitroferrum 2002]
          Length = 937

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%)

Query: 18 YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFA 77
          +  L +  DAQ    +G NG GKT +L+A+  L   +   +  Y    R    +F     
Sbjct: 15 WQRLTVPLDAQIVTIIGPNGSGKTTLLDAMRTLLAIKCSGKRDYKRYVRNNREAFAYLRG 74

Query: 78 RVEGMEG 84
           V+    
Sbjct: 75 VVDNPRR 81



 Score = 43.0 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 280 KAITIAHGSTGEQ--KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
             +     S G+Q  K +++ I L     + +    +  + +DE  AHLD    + +   
Sbjct: 826 MGMNDGEASGGQQVMKSLILLIAL-----MMDEANPSGFVFIDEPFAHLDIFNIDRVAGF 880

Query: 338 VTDIGSQIFMTGTD 351
           +    +Q  +T  +
Sbjct: 881 LKATEAQYLITTPN 894


>gi|209881510|ref|XP_002142193.1| hypothetical protein [Cryptosporidium muris RN66]
 gi|209557799|gb|EEA07844.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
          Length = 1092

 Score = 43.0 bits (100), Expect = 0.084,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          ++ L IS  R++       + FD   T+ VG NG GKT I+E +     G
Sbjct: 4  LEKLIISGIRSFTPDRREAIQFDHPITLIVGPNGSGKTTIIECLKVSVTG 53


>gi|304440344|ref|ZP_07400233.1| SMC protein family protein [Peptoniphilus duerdenii ATCC
          BAA-1640]
 gi|304371096|gb|EFM24713.1| SMC protein family protein [Peptoniphilus duerdenii ATCC
          BAA-1640]
          Length = 435

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 5  IK-IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +K IK +++  F+++A   L F+    + +G +  GKT ++ AI
Sbjct: 1  MKYIKKVHLINFQSHADSILDFEEGLNVILGRSDSGKTAVIRAI 44


>gi|182677693|ref|YP_001831839.1| DNA repair protein RecN [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|182633576|gb|ACB94350.1| DNA repair protein RecN [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 554

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 44/148 (29%), Gaps = 22/148 (14%)

Query: 14  EFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSP 70
             RN      L L   +  TI  G+ G GK+ +L+A +     RG        + R G  
Sbjct: 6   NIRNIVLIDRLDLELGSGLTILTGETGAGKSILLDAFALALGARG-----DGSLVRQGET 60

Query: 71  SF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
                              AR + +E    + ++     D   R   IND  +       
Sbjct: 61  QGQVTALFELAPGHPAVEAARAQEIETDGALILRRVQMADGRTRAF-INDQPVSAQALRA 119

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLD 145
               +  +    D          R+ LD
Sbjct: 120 IGRGLVEIHGQHDDRALVNPALHRQLLD 147


>gi|156502400|ref|YP_001428465.1| hypothetical protein FTA_1033 [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290952881|ref|ZP_06557502.1| hypothetical protein FtulhU_00070 [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313926|ref|ZP_06804491.1| hypothetical protein FtulhU_00070 [Francisella tularensis subsp.
           holarctica URFT1]
 gi|156253003|gb|ABU61509.1| hypothetical protein FTA_1033 [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 470

 Score = 43.0 bits (100), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           D+ + + D  +TI   S GE+K++L+    A    ++       + +LDE  +H+  D +
Sbjct: 37  DIQIFFNDDNLTIGDLSEGEKKLLLLK---AAFEFVAQ---EDSLFMLDEPDSHIHLDNK 90

Query: 332 NALFRIVTDI--GSQIFM 347
             +  I+       Q  +
Sbjct: 91  KHIIDILEQYKDNRQFIV 108


>gi|330958066|gb|EGH58326.1| DNA repair protein RecN [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 557

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 68/218 (31%), Gaps = 33/218 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +     L L  D   ++  G+ G GK+ +L+A+      R     + + V R
Sbjct: 2   LVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDR-----ADSGVVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
            G+                  A ++  +   D    L        R    IN       D
Sbjct: 57  PGADKADILATFDLGDIPEAEAWLKERDLDNDGPCILRRVITAEGRSRSYINGSPCPQGD 116

Query: 115 --ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
              L + L           +    +   RR LD    A D      +     L   R   
Sbjct: 117 LKALGELLIDIHSQHEHQSLLK--TDTHRRLLDEYAGATD------LARQVHLAAQR--- 165

Query: 173 LTEGYFDSSWCS-SIEAQMAELGVKINIARVEMINALS 209
             +   +    S S + Q A    ++   ++E + +LS
Sbjct: 166 WRQTRQELERLSNSGDEQRARH--QLLSYQLEELESLS 201


>gi|331083465|ref|ZP_08332577.1| hypothetical protein HMPREF0992_01501 [Lachnospiraceae bacterium
          6_1_63FAA]
 gi|330404158|gb|EGG83706.1| hypothetical protein HMPREF0992_01501 [Lachnospiraceae bacterium
          6_1_63FAA]
          Length = 464

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT-----------IFVGDNGVGKTNILEAISFL 50
          +++  L ++  +N     +                     G NG GKT I++A+ FL
Sbjct: 6  VRLSSLQLTNIKNVKRGTIYMPNTVNKILSADKAEILGIYGQNGSGKTAIVDALYFL 62


>gi|320451243|ref|YP_004203339.1| DNA repair protein RecN [Thermus scotoductus SA-01]
 gi|320151412|gb|ADW22790.1| DNA repair protein RecN [Thermus scotoductus SA-01]
          Length = 534

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 84/266 (31%), Gaps = 29/266 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +          L       +  G+ G GK+ +++A++ L   R         +  
Sbjct: 2   LKRLEVRNLAVIREATLELGPGLNVLTGETGAGKSLLVDALALLLGARS-----EGLLGP 56

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G     + F + EG E +    +   +         +I+  V+ + +   +  R   L 
Sbjct: 57  FGDSLLVTAFFQGEGEERILSRRVGGRSTP-------RIDGEVVSLKELQEEAERWLSLH 109

Query: 127 PSMDRIFSGLSMERRRFLDRMV-FAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
                I       +R  LD ++   +   +       + L+  +  L       +     
Sbjct: 110 AQHTAIALLSPKRQRELLDALLPPGLLQEYGEAYRKHQALLAEKRTLEEALRAKTEREDL 169

Query: 186 IEAQMAEL--------------GVKINIARVEMINALSSLIMEYVQK-ENFPHIKLSLTG 230
           +  Q+ E+                   +  +E +   S      + +      ++ +L  
Sbjct: 170 LRFQLKEILEASPRPGEDQELEAEAQKLRHLETLRERSGKAYALLAEGGALDLLQAALRE 229

Query: 231 FLDG-KFDQSFCALKEEYAKKLFDGR 255
              G +FD +  AL ++    L  GR
Sbjct: 230 LRAGSRFDPALEALAKDLEAALEGGR 255


>gi|304389277|ref|ZP_07371242.1| DNA repair protein RecN [Mobiluncus curtisii subsp. curtisii ATCC
          35241]
 gi|304327395|gb|EFL94628.1| DNA repair protein RecN [Mobiluncus curtisii subsp. curtisii ATCC
          35241]
          Length = 575

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          ++ L I      +S+ L F    T+  G+ G GKT +L ++ +L   +
Sbjct: 2  LESLRIENLGTISSVALEFSPGFTVITGETGAGKTMLLTSLDWLLGAK 49


>gi|195494742|ref|XP_002094969.1| GE22121 [Drosophila yakuba]
 gi|194181070|gb|EDW94681.1| GE22121 [Drosophila yakuba]
          Length = 1308

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 13/98 (13%)

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV- 338
           K     + S G Q+ + +   L          G   +L+ DE S  LD   R  L+R++ 
Sbjct: 460 KRSAARYLSGGTQRRLSLACSLC---------GGVKVLICDEPSTGLDPGARRELWRLIL 510

Query: 339 -TDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
               G  I +T       + L +  + + I++ Q  CI
Sbjct: 511 EAKEGCTILLTTHQLDDGEVLGD--RMVIINDGQLRCI 546


>gi|90578242|ref|ZP_01234053.1| transporter [Vibrio angustum S14]
 gi|90441328|gb|EAS66508.1| transporter [Vibrio angustum S14]
          Length = 246

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 18 YASLR-LVFDAQHTIFVGDNGVGKTNILEAISF 49
             L  + F    T FVG+NG GK+ ++EAI+ 
Sbjct: 32 IKELDVIEFHPDVTFFVGENGSGKSTLIEAIAV 64


>gi|147907130|ref|NP_001083550.1| structural maintenance of chromosomes protein 6 [Xenopus laevis]
 gi|82186704|sp|Q6P9I7|SMC6_XENLA RecName: Full=Structural maintenance of chromosomes protein 6;
           Short=SMC protein 6; Short=SMC-6; Short=xSMC6
 gi|38173755|gb|AAH60747.1| MGC68930 protein [Xenopus laevis]
          Length = 1128

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 12/96 (12%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           I+ + +  F  ++ L    F       +G+NG GK+ +L A+     G+       A +T
Sbjct: 87  IESIFLRNFMCHSMLGPFRFGPNVNFVIGNNGSGKSAVLTALIVGLGGK-------AAIT 139

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101
             GS    S    V+  +  A+ISI L  R   + +
Sbjct: 140 NRGS----SIKGFVKEGQTFAEISITLRNRGQDAYK 171


>gi|317970159|ref|ZP_07971549.1| ABC-type cobalt transport system, ATPase component [Synechococcus
           sp. CB0205]
          Length = 234

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQI 345
           S G+Q+ + + + L              +LL+DE +A LD   R+ +  ++  +     +
Sbjct: 150 SGGQQRRLAMAVQL---------LRDPKVLLMDEPTAGLDWSVRSEIIELIDQLSRERIV 200

Query: 346 FMTGTDKSVFDSLNETAKFMRISNHQ 371
            +   +  +F+ L E  +   + + Q
Sbjct: 201 LIVTHEPELFEPLTEPGQRWNLIDGQ 226


>gi|253687549|ref|YP_003016739.1| SMC domain protein [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251754127|gb|ACT12203.1| SMC domain protein [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 253

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 29/89 (32%)

Query: 22  RLVFDAQHTIFVGDNGVGKTNILEAISF--------------LSPGRGFRRASYADVTRI 67
           ++ F    T  VG+NG GK+ +LEA++                S       ++ +D  RI
Sbjct: 37  KIHFHPDVTFLVGENGSGKSTLLEAVAIAMGFNPEGGSRNFNFSTRDSH--SNLSDYIRI 94

Query: 68  -------------GSPSFFSTFARVEGME 83
                         + SFF+    +E ++
Sbjct: 95  VKGITRPRTGYFLRAESFFNVATEIENID 123


>gi|225575659|ref|ZP_03784269.1| hypothetical protein RUMHYD_03752 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037116|gb|EEG47362.1| hypothetical protein RUMHYD_03752 [Blautia hydrogenotrophica DSM
           10507]
          Length = 514

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 35/182 (19%), Positives = 66/182 (36%), Gaps = 12/182 (6%)

Query: 175 EGYFDSSWCSSIEAQ--MAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
           +   +  W    E Q  +  L  +   +R E   A+S   +E    E      + L   +
Sbjct: 315 QWKAEELWERMQEEQKLLENLRTEYEQSRREA-AAVSPEQVEADALELAEQTLVRLGDQM 373

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
            GK  +       E   +L DG+        T+       L V   ++ +     S G  
Sbjct: 374 QGKISRRLQERISEIFSELTDGKYRRVSLDETM------KLGVHTEERYVPADRLSRGTL 427

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM-TGTD 351
           + +   + +A   ++         L+LDE+ A  D+ +  +  R + D G Q+ + T  D
Sbjct: 428 EQIYFSLRMAANEVLCAE--EPLPLILDEVFAMYDDRRLASCLRWLADCGRQVLICTCQD 485

Query: 352 KS 353
           + 
Sbjct: 486 RE 487



 Score = 39.9 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 15/39 (38%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          ++I+   +  F         F     +  G+N  GK+ +
Sbjct: 1  MRIERAKVDNFGKLNQREFRFGPGINVIYGENEGGKSTL 39


>gi|224368581|ref|YP_002602744.1| hypothetical protein HRM2_14710 [Desulfobacterium autotrophicum
          HRM2]
 gi|223691297|gb|ACN14580.1| conserved hypothetical protein [Desulfobacterium autotrophicum
          HRM2]
          Length = 547

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +K+  + I  F+     + + F    T+  G N  GK+ I++A+ +
Sbjct: 1  MKLTGMTIENFKGISKPVHIDFKP-VTLLFGPNSAGKSTIVQALHY 45


>gi|83721224|ref|YP_442534.1| ABC transporter ATP-binding protein [Burkholderia thailandensis
           E264]
 gi|257138743|ref|ZP_05587005.1| ABC transporter, ATP-binding protein [Burkholderia thailandensis
           E264]
 gi|83655049|gb|ABC39112.1| ABC transporter, ATP-binding protein [Burkholderia thailandensis
           E264]
          Length = 646

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 40/205 (19%)

Query: 168 GRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            R  LL   G   S+   ++   +A L   +   R   I   +   +E +++        
Sbjct: 344 QRIGLLGANGQGKSTLIKTLAGTLAPLSGDVRTGRGLTIGYFAQHQLETLRE-------- 395

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                     D+S  A     A    +    D +      G    D+          IA 
Sbjct: 396 ----------DESALAHLARLAPDTREQELRDFLGGFNFSG----DMA------TAPIAP 435

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE+  + + + +              +LLLDE + HLD + R+AL   +      + 
Sbjct: 436 FSGGEKARLALALIIWQ---------KPNLLLLDEPTNHLDLETRHALTMALAQFEGTLI 486

Query: 347 MTGTDKSVFDSLNETAKFMRISNHQ 371
           +   D+ +  +  +  +FM ++ H+
Sbjct: 487 LVSHDRHLLRATTD--QFMLVAKHR 509


>gi|89256327|ref|YP_513689.1| hypothetical protein FTL_0980 [Francisella tularensis subsp.
           holarctica LVS]
 gi|167010844|ref|ZP_02275775.1| hypothetical protein Ftulh_09053 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367661|ref|ZP_04983682.1| hypothetical protein FTHG_00931 [Francisella tularensis subsp.
           holarctica 257]
 gi|89144158|emb|CAJ79419.1| hypothetical protein FTL_0980 [Francisella tularensis subsp.
           holarctica LVS]
 gi|134253472|gb|EBA52566.1| hypothetical protein FTHG_00931 [Francisella tularensis subsp.
           holarctica 257]
          Length = 468

 Score = 43.0 bits (100), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 272 DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
           D+ + + D  +TI   S GE+K++L+    A    ++       + +LDE  +H+  D +
Sbjct: 37  DIQIFFNDDNLTIGDLSEGEKKLLLLK---AAFEFVAQ---EDSLFMLDEPDSHIHLDNK 90

Query: 332 NALFRIVTDI--GSQIFM 347
             +  I+       Q  +
Sbjct: 91  KHIIDILEQYKDNRQFIV 108


>gi|325853128|ref|ZP_08171277.1| RecF/RecN/SMC N-terminal domain protein [Prevotella denticola
          CRIS 18C-A]
 gi|325484502|gb|EGC87423.1| RecF/RecN/SMC N-terminal domain protein [Prevotella denticola
          CRIS 18C-A]
          Length = 376

 Score = 43.0 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +  + I  +++   + L       I +G NGVGKTN +
Sbjct: 25 LNRIIIDGYKSIHHVDLELRP-INILIGSNGVGKTNFI 61


>gi|227488690|ref|ZP_03919006.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542311|ref|ZP_03972360.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227091351|gb|EEI26663.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181911|gb|EEI62883.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 229

 Score = 43.0 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 23/138 (16%)

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKV 294
           K D  F   + +   K  + R +  + R  L   H  D               S G++++
Sbjct: 94  KEDIGFSLKRFKLPAKQREQRALAMLERYGLAT-HADDSPYTL----------SGGQKQL 142

Query: 295 VLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSV 354
           + +   L              ++LLDE +  LD   R  + + ++ +  QI +   D ++
Sbjct: 143 LALASILIM---------EPSVILLDEPTTLLDLRNRVRIKKELSRLDQQIIVATHDLAL 193

Query: 355 FDSLNETAKFMRISNHQA 372
            +  +   + + I++   
Sbjct: 194 LEGFD---RVIYIADGTI 208


>gi|167619570|ref|ZP_02388201.1| ABC transporter, ATP-binding protein [Burkholderia thailandensis
           Bt4]
          Length = 646

 Score = 43.0 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 40/205 (19%)

Query: 168 GRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            R  LL   G   S+   ++   +A L   +   R   I   +   +E +++        
Sbjct: 344 QRIGLLGANGQGKSTLIKTLAGTLAPLSGDVRTGRGLTIGYFAQHQLETLRE-------- 395

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                     D+S  A     A    +    D +      G    D+          IA 
Sbjct: 396 ----------DESALAHLARLAPDTREQELRDFLGGFNFSG----DMA------TAPIAP 435

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE+  + + + +              +LLLDE + HLD + R+AL   +      + 
Sbjct: 436 FSGGEKARLALALIIWQ---------KPNLLLLDEPTNHLDLETRHALTMALAQFEGTLI 486

Query: 347 MTGTDKSVFDSLNETAKFMRISNHQ 371
           +   D+ +  +  +  +FM ++ H+
Sbjct: 487 LVSHDRHLLRATTD--QFMLVAKHR 509


>gi|17230624|ref|NP_487172.1| ABC transport protein, ATP-binding subunit [Nostoc sp. PCC 7120]
 gi|17132227|dbj|BAB74831.1| ABC transport protein, ATP-binding subunit [Nostoc sp. PCC 7120]
          Length = 381

 Score = 43.0 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          + + +++  FR +  + L       + +G NG GKT+ L+ +S L+
Sbjct: 3  RFENISVRGFRRFRQIDLEMRD-LIVMIGANGAGKTSFLDVLSTLA 47


>gi|87125317|ref|ZP_01081163.1| putative chromosome segregation protein, SMC ATPase superfamily
          protein [Synechococcus sp. RS9917]
 gi|86167086|gb|EAQ68347.1| putative chromosome segregation protein, SMC ATPase superfamily
          protein [Synechococcus sp. RS9917]
          Length = 1185

 Score = 43.0 bits (100), Expect = 0.087,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYADVTRIG 68
          + +  +   T+  G NG GK+NIL+ + F   L+  RG R     D+   G
Sbjct: 1  MSIPLEPGFTVVTGPNGSGKSNILDGVLFCLGLATSRGMRADRLPDLVNSG 51


>gi|300856408|ref|YP_003781392.1| hypothetical protein CLJU_c32430 [Clostridium ljungdahlii DSM
          13528]
 gi|300436523|gb|ADK16290.1| conserved hypothetical protein [Clostridium ljungdahlii DSM
          13528]
          Length = 417

 Score = 43.0 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 28 QHTIFVGDNGVGKTNILEAISFLS--PGRGF 56
          +  +  G N  GKTN+L+AISFL+   G+  
Sbjct: 45 KTAVLYGANASGKTNVLKAISFLANFLGKSH 75


>gi|284033069|ref|YP_003383000.1| AAA ATPase [Kribbella flavida DSM 17836]
 gi|283812362|gb|ADB34201.1| AAA ATPase [Kribbella flavida DSM 17836]
          Length = 239

 Score = 43.0 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          L      T  VG+NG GK+ ++EA++  + G  
Sbjct: 38 LDLGPGVTFLVGENGAGKSTLVEAVAV-AFGMS 69


>gi|110802583|ref|YP_698059.1| hypothetical protein CPR_0733 [Clostridium perfringens SM101]
 gi|110683084|gb|ABG86454.1| hypothetical protein CPR_0733 [Clostridium perfringens SM101]
          Length = 437

 Score = 43.0 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 10 LNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          + +  F+++  +            +  +  G+NG+GK+N+  A   LS     R     +
Sbjct: 5  IKLRNFKSFGDVTFDLRDKNGKAKKLILIYGENGIGKSNLASAFYMLSET--LRTMDVRE 62

Query: 64 V 64
          +
Sbjct: 63 I 63


>gi|17534363|ref|NP_496476.1| hypothetical protein F54D5.14 [Caenorhabditis elegans]
 gi|3875345|emb|CAB16920.1| C. elegans protein F54D5.14, partially confirmed by transcript
          evidence [Caenorhabditis elegans]
 gi|3877518|emb|CAA91339.1| C. elegans protein F54D5.14, partially confirmed by transcript
          evidence [Caenorhabditis elegans]
          Length = 1130

 Score = 43.0 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 6  KIKFLNISEFRNYASLRLVF-DAQHTIFV--GDNGVGKTNILEAISFLSPGRGF---RRA 59
          ++  + ++ F  +A+L++ F  AQ+  F   G NG GK+ +  AI+    GRG    R  
Sbjct: 27 RVASVKLTNFMCHANLQIDFKTAQNNCFYIGGPNGSGKSALFAAINLGLGGRGSDNDRGN 86

Query: 60 SYADVTRIG 68
          +     + G
Sbjct: 87 TVKSYIKDG 95


>gi|329767167|ref|ZP_08258695.1| DNA repair protein RecN [Gemella haemolysans M341]
 gi|328837892|gb|EGF87517.1| DNA repair protein RecN [Gemella haemolysans M341]
          Length = 566

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  LNI +F       +      T+  G+ G GK+ IL AIS LS   G R ++     R
Sbjct: 2  LIQLNIKQFGIIEKATIELKNGLTVLSGETGAGKSMILAAISQLS---GQRTSTS--YIR 56

Query: 67 IGSP 70
           G  
Sbjct: 57 YGEE 60


>gi|322382768|ref|ZP_08056612.1| hypothetical protein PL1_3464 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321153237|gb|EFX45683.1| hypothetical protein PL1_3464 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 576

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 64/208 (30%), Gaps = 23/208 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I        + LVF     +  G+ G GK+ I++A+  +  GR       +++ R
Sbjct: 2   LTELSIRNLAVVEYVHLVFRQGFHVLTGETGAGKSMIIDALGLIVGGRS-----SSELVR 56

Query: 67  IGSPS--------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G                  +    ++  M    +  I       +     +IN  ++ +
Sbjct: 57  HGCDRTEIEAVFELPVSHPVWEVLDKLGIMARTDEQLIIRRDVTAQGKSSSRINGQLVNL 116

Query: 113 --VDELNKHLRISWLVPSMDRIFSGLSMERR--RFLDRMVFAIDPRHRRRMIDFERLMRG 168
             + E+   L           +        +   + +R +      +++    + +L R 
Sbjct: 117 TMLREVGNWLVNLHGQHEHQSLLKVEEHIHQLDVYGEREIGKAKADYQKTYNIYIKLRRE 176

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVK 196
            + L                Q+ E+   
Sbjct: 177 LSELEENSKQSLQMLDLYRFQIEEIAAA 204


>gi|297684569|ref|XP_002819905.1| PREDICTED: structural maintenance of chromosomes protein 5-like
           [Pongo abelii]
          Length = 1048

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 7/128 (5%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            + +++ R Y    +       + VG NG GK++I+ AI     G+         V    
Sbjct: 2   NVKLTDSRTYDICEVSPGPHLNMIVGANGTGKSSIVCAICLGLAGKPAFMGRADKVGFFV 61

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV--IRVVDELNKHLRISW-- 124
                     +E      ++ I  E    ++     IN      ++V+E    L I    
Sbjct: 62  KRGCSRGMVEIELFRASGNLVITREIDVAKNQSFWFINKKATSQKIVEEKVAALNIQVGN 121

Query: 125 ---LVPSM 129
               +P  
Sbjct: 122 LCQFLPQD 129


>gi|269976230|ref|ZP_06183226.1| putative abortive infection protein [Mobiluncus mulieris 28-1]
 gi|306817648|ref|ZP_07451391.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|269935559|gb|EEZ92097.1| putative abortive infection protein [Mobiluncus mulieris 28-1]
 gi|304649690|gb|EFM46972.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 458

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 19/68 (27%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQ------------------HTIFVGDNGVGKTNILE 45
          ++I F ++  FR+   +  + F                      TI +G N  GK+N+++
Sbjct: 1  MRILFFSVKNFRSVDETQTIDFVKGRVGGSPLVKGGWEPHVRPVTILMGPNAAGKSNVID 60

Query: 46 AISFLSPG 53
          A+ +++  
Sbjct: 61 AMGYVTTA 68


>gi|56460097|ref|YP_155378.1| DNA repair ATPase RecN [Idiomarina loihiensis L2TR]
 gi|56179107|gb|AAV81829.1| ATPase involved in DNA repair, RecN [Idiomarina loihiensis L2TR]
          Length = 554

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 37/116 (31%), Gaps = 17/116 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I  F    SL + F    T   G+ G GK+  L+A+S     R     + A+  R
Sbjct: 2   LSQLTIRNFAVVKSLDIEFHNGMTAITGETGAGKSIALDALSLCLGSR-----ADANWVR 56

Query: 67  IGSPSFFSTFA-----------RVEGMEGLADISIKLETRDDRSVR-CLQINDVVI 110
            G      T              +   E  AD    L     R  R    IN   +
Sbjct: 57  PGQEKAEITAVFALEDASPAHQWLTENEFDADDDCVLRRVIQRDGRSKAWINGTPV 112


>gi|146293706|ref|YP_001184130.1| hypothetical protein Sputcn32_2610 [Shewanella putrefaciens
          CN-32]
 gi|145565396|gb|ABP76331.1| conserved hypothetical protein [Shewanella putrefaciens CN-32]
          Length = 744

 Score = 43.0 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          + IK + I    ++    L   +     +G N VGK+N+L
Sbjct: 1  MAIKSIRIKNLLSFEDFTLENISDINCIIGKNNVGKSNLL 40


>gi|300864424|ref|ZP_07109295.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337568|emb|CBN54443.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 688

 Score = 42.6 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 5  IKIKFLNISEFRNY--ASLRLVFDAQH---TIFVGDNGVGKTNILEA 46
          +K+  + +  FR +   +  + F +     T+  G+NG GKT ++ A
Sbjct: 1  MKLNSIKLYNFRQFYGKTPEITFASGTRNTTMIHGNNGSGKTTLMNA 47


>gi|295662104|ref|XP_002791606.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
 gi|226279732|gb|EEH35298.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
          Length = 1179

 Score = 42.6 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIVEVVIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSKSPIGFEEYASISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|159901784|ref|YP_001548029.1| hypothetical protein Haur_5274 [Herpetosiphon aurantiacus ATCC
          23779]
 gi|159894823|gb|ABX07901.1| conserved hypothetical protein [Herpetosiphon aurantiacus ATCC
          23779]
          Length = 519

 Score = 42.6 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA------QHTIFVGDNGVGKTNILEAISFL 50
          +++    I  +R   +L++ F+            VG NG GK+ +L+AI+F+
Sbjct: 1  MRLHHCTIGHYRVLRNLQIKFNNTDNERLGIDFLVGQNGSGKSTLLQAITFI 52


>gi|229582903|ref|YP_002841302.1| hypothetical protein YN1551_2413 [Sulfolobus islandicus
          Y.N.15.51]
 gi|228013619|gb|ACP49380.1| conserved hypothetical protein [Sulfolobus islandicus Y.N.15.51]
          Length = 301

 Score = 42.6 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + I  + +  FR       +   +  I VG+NG GKT+ LE+I   +  + 
Sbjct: 1  MNISEVVVEGFRGLKIATRL--KRVNIVVGENGSGKTSFLESIFMSTLFQS 49


>gi|310792250|gb|EFQ27777.1| RecF/RecN/SMC N terminal domain-containing protein [Glomerella
           graminicola M1.001]
          Length = 1179

 Score = 42.6 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           +++  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1   MRVIEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMTTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKKKSPIGFEEYATISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|301055832|ref|YP_003794043.1| hypothetical protein BACI_c43090 [Bacillus anthracis CI]
 gi|300378001|gb|ADK06905.1| hypothetical protein BACI_c43090 [Bacillus cereus biovar
          anthracis str. CI]
          Length = 1001

 Score = 42.6 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 5  IKIKFLNISEFRNYASL-RLVFDAQ-HTIFVGDNGVGKTNILEAISFLSPGR 54
          +KI+ + I +FR +  +    F  +   I  G NG GK+ I ++I +   G+
Sbjct: 1  MKIQKIIIKDFRIFNGMYEFDFKNKDVIIISGPNGNGKSTIFDSIQWCLTGK 52


>gi|300724348|ref|YP_003713666.1| hypothetical protein XNC1_3524 [Xenorhabdus nematophila ATCC 19061]
 gi|297630883|emb|CBJ91560.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
          Length = 402

 Score = 42.6 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 7   IKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +  L I  F++   L   F+     + VG NG GK+N+   ISF    R     +     
Sbjct: 39  LDKLTIKGFKSIHELN-EFELKNLNVIVGANGAGKSNL---ISFFKMLRALIDGTLNRYV 94

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
           R    +    F             ++ ETR        ++
Sbjct: 95  RDNGGASDLLF-----NGNKVTQKMEFETRFGDRGFRFKL 129


>gi|261404525|ref|YP_003240766.1| AAA ATPase [Paenibacillus sp. Y412MC10]
 gi|261280988|gb|ACX62959.1| AAA ATPase [Paenibacillus sp. Y412MC10]
          Length = 247

 Score = 42.6 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAI 47
          L F  + T  VG+NG+GK+ +LEAI
Sbjct: 39 LHFHPKVTYIVGENGMGKSTLLEAI 63


>gi|260495043|ref|ZP_05815172.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
 gi|260197486|gb|EEW95004.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
          Length = 697

 Score = 42.6 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          ++ +K + +  FR   + +L      ++ +G N  GKT++L
Sbjct: 6  KMVLKEIVVENFRLLKNFKLELKEDLSLIIGKNNCGKTSVL 46


>gi|260588838|ref|ZP_05854751.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
 gi|260540617|gb|EEX21186.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
          Length = 472

 Score = 42.6 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT-----------IFVGDNGVGKTNILEAISFL 50
          +++  L ++  +N     +                     G NG GKT I++A+ FL
Sbjct: 14 VRLSSLQLTNIKNVKRGTIYMPNTVNKILSADKVEILGIYGQNGSGKTAIVDALYFL 70


>gi|254362455|ref|ZP_04978563.1| recombination protein RecN [Mannheimia haemolytica PHL213]
 gi|153094047|gb|EDN74959.1| recombination protein RecN [Mannheimia haemolytica PHL213]
          Length = 560

 Score = 42.6 bits (99), Expect = 0.090,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 61/215 (28%), Gaps = 35/215 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F     L L  +   ++  G+ G GK+  ++A+      R       + + R
Sbjct: 2   LTQLTINNFAIVRHLILELNEGMSVITGETGAGKSIAIDALGLCLGYRS-----ESGMIR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQINDV-V 109
            GS     +                   +   +   +  ++     D   +    N    
Sbjct: 57  NGSDKADISATFTMQPHSPAYLWLQEHELLDEDNPQECILRRMINIDGRSKAFVNNRSLP 116

Query: 110 IRVVDELNKHL--------RISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMID 161
           +  + EL ++L            L             +    L  ++  +  ++     +
Sbjct: 117 VSQLRELGQYLIHLNGQHAPQLLLKNEYQLEIV----DHYATLQPLLMKMAKQY-GNWKE 171

Query: 162 FERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
             + ++   +   E             ++ E  +K
Sbjct: 172 LNKQVKNFQKQCQENEARKQLLEYQVEELDEFAIK 206


>gi|251778039|ref|ZP_04820959.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082354|gb|EES48244.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 790

 Score = 42.6 bits (99), Expect = 0.091,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 85/214 (39%), Gaps = 23/214 (10%)

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           ++  E+ ++  + L+ + Y      S IE ++  +  KI+  + E   AL   +     +
Sbjct: 596 LLKVEKEIKDLDHLIEKRYLGKRVISEIEEELYSVEEKISKYKKEF-KALE--LASLKLQ 652

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
           E+F  ++ ++   L+ +    F  L  E+ + +      +   R         +L+ D  
Sbjct: 653 ESFKELRTNVGPKLNKEVLNKFNFLTNEFYRDVKISEDYELKIR-------NDNLLFD-- 703

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
                    S G +  + + + L+   ++         L LD+     D+ +R    +++
Sbjct: 704 -----SEILSNGAKDQLYLALRLSFINMLFE--NENVPLFLDDAFIQYDDKRRERALKLL 756

Query: 339 --TDIGSQIFMT--GTDKSVFDSLNETAKFMRIS 368
                G  IF T    +K++ D++N     +++S
Sbjct: 757 IKEGFGQIIFFTCQTIEKNILDNMNTDYNLIQLS 790


>gi|210633856|ref|ZP_03297871.1| hypothetical protein COLSTE_01788 [Collinsella stercoris DSM 13279]
 gi|210159025|gb|EEA89996.1| hypothetical protein COLSTE_01788 [Collinsella stercoris DSM 13279]
          Length = 544

 Score = 42.6 bits (99), Expect = 0.091,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 65/262 (24%), Gaps = 40/262 (15%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M + I ++ + +          LV     T+  G+ G GKT +L A+  L   R     +
Sbjct: 1   MIDEIHVENVAL-----IQEADLVPGTGLTVLTGETGAGKTALLSALKLLMGER-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIRVVDELNK 118
            +   R GS           G         +     D   R  +++     +R + E   
Sbjct: 51  DSSAVREGSEGALVEGRLFAGAHDEQGFVAQRRVGPDGRSRA-RVDGAMASVRELSERVS 109

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
            L          R+    S      +D +           +  +   +        E   
Sbjct: 110 PLIDLCGQHEHQRLLDASS-----HVDMVDAWAGAGIAAALEAYRTALDAAQEAARE--- 161

Query: 179 DSSWCSSIEAQMAELGVKINIARVEM---------------INALSSLIMEYVQKENFPH 223
                + +E      G ++  AR                  +                 H
Sbjct: 162 ----LARVEEASRTQGSRLEEARFAYERICDVDPKPGEYEELEERLPRFEHAEALAGCAH 217

Query: 224 IKLSLTGFLDGKFDQSFCALKE 245
                     G  D    A+ E
Sbjct: 218 EAAEALSGEGGSLDPLNAAISE 239


>gi|149638178|ref|XP_001508900.1| PREDICTED: similar to Rad50 [Ornithorhynchus anatinus]
          Length = 1355

 Score = 42.6 bits (99), Expect = 0.091,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          KI+ ++I   R++         + F    TI VG NG GKT I+E + ++S G
Sbjct: 3  KIEKMSILGVRSFGIEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTG 55


>gi|115526471|ref|YP_783382.1| hypothetical protein RPE_4481 [Rhodopseudomonas palustris BisA53]
 gi|115520418|gb|ABJ08402.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisA53]
          Length = 384

 Score = 42.6 bits (99), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I  L IS +R+   +RL   +   +  G NG GK+++  A+  L+
Sbjct: 2  ITRLAISGYRSLRDIRLALGS-LNVVTGANGTGKSSLYRALKLLA 45


>gi|325268816|ref|ZP_08135441.1| RecF/RecN/SMC N terminal domain protein [Prevotella multiformis
          DSM 16608]
 gi|324988788|gb|EGC20746.1| RecF/RecN/SMC N terminal domain protein [Prevotella multiformis
          DSM 16608]
          Length = 374

 Score = 42.6 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +  + I  +++   + L       I +G NGVGKTN +
Sbjct: 23 LNRIIIDGYKSIHHVDLELRP-INILIGSNGVGKTNFI 59


>gi|283769468|ref|ZP_06342364.1| RecF/RecN/SMC N-terminal domain protein [Bulleidia extructa W1219]
 gi|283103736|gb|EFC05122.1| RecF/RecN/SMC N-terminal domain protein [Bulleidia extructa W1219]
          Length = 231

 Score = 42.6 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 12/196 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR--GFRRASYADV 64
           ++ L I  F     L L F    +   G+ G GK+  L+A+S L   +      +    +
Sbjct: 2   LEHLYIQNFILIDQLELDFPVGFSAITGETGAGKSIFLDALSLLQGQKASSSMVSKEKAI 61

Query: 65  T----RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL 120
                 +   S  S+F +  G +     ++  E          ++N  ++  +  L+  L
Sbjct: 62  IEGSFSLKGNSPVSSFLKENGFDVEDSFTVTREILSSGKS-TARVNRRIV-PLSFLHTLL 119

Query: 121 RISW-LVPSMDRIFSGLSMERRRFLDR--MVFAIDPRHRRRMIDFERLMRGRNRLLTEGY 177
                +    D  +    M     LD+    +      +    ++++++  +   L    
Sbjct: 120 ENQLDIHGQKDSAYLLQKMNHIYLLDKYGHFYHQKEEIKEAYENYKKVLEEKENFL-NTQ 178

Query: 178 FDSSWCSSIEAQMAEL 193
                    + Q+ EL
Sbjct: 179 LKEEELDFYQFQLHEL 194


>gi|76799146|ref|ZP_00781330.1| Transporter [Streptococcus agalactiae 18RS21]
 gi|76585498|gb|EAO62072.1| Transporter [Streptococcus agalactiae 18RS21]
          Length = 449

 Score = 42.6 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 8  KFLNISEFRNYASLRLVFDAQ-----HTIFVGDNGVGKTNILEAISFL 50
            +    F ++++L      +          G+NG GKTNI+EA   L
Sbjct: 3  SKIEFKNFMSFSNLTFDLLNRGKCKDIIAIYGENGSGKTNIVEAFKLL 50


>gi|332663375|ref|YP_004446163.1| phosphonate-transporting ATPase [Haliscomenobacter hydrossis DSM
           1100]
 gi|332332189|gb|AEE49290.1| Phosphonate-transporting ATPase [Haliscomenobacter hydrossis DSM
           1100]
          Length = 276

 Score = 42.6 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 14/89 (15%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI---VTDIGSQ 344
           S G+Q+ V +                  I++ DE + +LD+     +F I   +     Q
Sbjct: 197 SGGQQQRVAIA---------RALVNDPAIIMGDEPTGNLDKVNSQRVFEIFQNLAKENHQ 247

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             +T T    F +   + + + +S+ Q +
Sbjct: 248 TIITVTHDQDFAA--GSDRIIEMSDGQII 274


>gi|330821723|ref|YP_004350585.1| SMC domain protein [Burkholderia gladioli BSR3]
 gi|327373718|gb|AEA65073.1| SMC domain protein [Burkholderia gladioli BSR3]
          Length = 261

 Score = 42.6 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 16 RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          R+  +L L    + T FVG+NG GK+ +LEA++ 
Sbjct: 32 RSLDALEL--HPKITYFVGENGSGKSTLLEALAV 63


>gi|294102136|ref|YP_003553994.1| putative prophage Lp2 protein 4 [Aminobacterium colombiense DSM
          12261]
 gi|293617116|gb|ADE57270.1| putative prophage Lp2 protein 4 [Aminobacterium colombiense DSM
          12261]
          Length = 563

 Score = 42.6 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +K ++I ++R    L LVF     I  G NG  KT++L
Sbjct: 2  VKQIDIRKYRKMEDLSLVFSQGINILSGTNGTCKTSLL 39


>gi|297198603|ref|ZP_06916000.1| nodulation ABC transporter NodI [Streptomyces sviceus ATCC 29083]
 gi|197715429|gb|EDY59463.1| nodulation ABC transporter NodI [Streptomyces sviceus ATCC 29083]
          Length = 318

 Score = 42.6 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 42/139 (30%), Gaps = 16/139 (11%)

Query: 21  LRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPG-----RGFRRASYADVTRIGSPSFFS 74
           L L          +G NG GKT    A+  L+          R A   D+ R   P    
Sbjct: 31  LDLAVAPGTVCGILGPNGAGKTT---AVRLLTTLLRPDAGSARVAG-RDLVR--EPEAVR 84

Query: 75  TFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFS 134
               V G     D  +          R  ++     R  + L++      L  + DR  S
Sbjct: 85  RAIAVTGQYASVDGDLTGRQNLRLFARLHRVRGPAERAAELLDRF----GLTEAADRAVS 140

Query: 135 GLSMERRRFLDRMVFAIDP 153
             S   RR LD     +  
Sbjct: 141 TYSGGMRRRLDLAASMVRR 159


>gi|84386670|ref|ZP_00989696.1| hypothetical protein V12B01_01032 [Vibrio splendidus 12B01]
 gi|84378476|gb|EAP95333.1| hypothetical protein V12B01_01032 [Vibrio splendidus 12B01]
          Length = 721

 Score = 42.6 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 63/175 (36%), Gaps = 32/175 (18%)

Query: 200 ARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKF------DQSFCALKEEYAK-KLF 252
            R      L  + ++       P + + L  + + K       +Q+     +     +LF
Sbjct: 313 KREHFKKELWRMYVQQC-----PEVDIYLEAWEEHKEKIKELENQAESEAPQWLEAIELF 367

Query: 253 DGRKMDSMSRRTLI-------GPHRSDLIVDYCDKAITIAH-------GSTGEQKVVLVG 298
           + R +D   +  L        G  ++ L   + D      +        S GE++ + + 
Sbjct: 368 NSRFIDMPFKLGLFNQADAVLGKSKALLKFIFEDGKDLREYKRSEISDLSQGEKRALYLL 427

Query: 299 IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI-----GSQIFMT 348
            F+    ++   +      ++D+++   D   ++A+ + + D+       QI +T
Sbjct: 428 NFIFDVEMLKR-SNQTTYFIIDDVADSFDYKNKHAILQYLEDLTKHDGFHQIILT 481


>gi|331007401|ref|ZP_08330585.1| ABC-type tungstate transport system, ATP-binding protein [gamma
           proteobacterium IMCC1989]
 gi|330418779|gb|EGG93261.1| ABC-type tungstate transport system, ATP-binding protein [gamma
           proteobacterium IMCC1989]
          Length = 243

 Score = 42.6 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 11/81 (13%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ--I 345
           S+G+Q++V +                  +LL+DE  A+LD +++  +  ++ D+ SQ  +
Sbjct: 135 SSGQQQLVALA---------RAWALSPQLLLIDEPCANLDPNRQQHIESLICDMQSQCKV 185

Query: 346 FMTGTDKSVFDSLNETAKFMR 366
            M+  +    + L +   F+ 
Sbjct: 186 IMSTHNIRQAERLADDVVFLE 206


>gi|315253143|gb|EFU33111.1| putative DNA repair protein RecN [Escherichia coli MS 85-1]
          Length = 368

 Score = 42.6 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L IS F     L + F +  T+  G+ G GK+  ++A+     GR     + AD+ R
Sbjct: 2  LAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGR-----AEADMVR 56

Query: 67 IGSPSF 72
           G+   
Sbjct: 57 TGAARA 62


>gi|302878757|ref|YP_003847321.1| putative ATPase; putative exported protein [Gallionella
          capsiferriformans ES-2]
 gi|302581546|gb|ADL55557.1| putative ATPase; putative exported protein [Gallionella
          capsiferriformans ES-2]
          Length = 375

 Score = 42.6 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          ++ +++S F+ + +L L      T+  G NG GK+++++A+  LS    FR
Sbjct: 2  LREIHLSSFKCFDTLNLRLGP-LTLLTGVNGGGKSSVMQALVLLSQT--FR 49


>gi|254524240|ref|ZP_05136295.1| SMC domain protein [Stenotrophomonas sp. SKA14]
 gi|219721831|gb|EED40356.1| SMC domain protein [Stenotrophomonas sp. SKA14]
          Length = 386

 Score = 42.6 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          ++ L I+ +R+   L L    Q  +  GDNG GK+++  A+  L+
Sbjct: 2  LQTLAIAHYRSLHGLVLPLQ-QLNVVTGDNGSGKSSLYRALRLLA 45


>gi|171920660|ref|ZP_02931893.1| p115 protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
 gi|171903393|gb|EDT49682.1| p115 protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
          Length = 981

 Score = 42.6 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 83/267 (31%), Gaps = 43/267 (16%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K +    F+++   +   F    T  VG NG GK+NI++A+ ++      +  R     
Sbjct: 4   LKKIEAQGFKSFGEPIVAEFKHPMTGIVGANGTGKSNIVDALKWVIGDQSLKSMRAHK-N 62

Query: 63  DVTRIGSPSFFSTFA--------RVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRV 112
           ++   G                  V  +       IK+        +     IND ++R 
Sbjct: 63  ELLFSGGRYAPKAHIARVNLYFNNVNNVLYTEHKEIKISRVLNTKTNENTYYINDEIVR- 121

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S            +ERR+  +             +  + 
Sbjct: 122 LKDITDMFLDSGLSKGSLGIISQGAVSWFAEAKPIERRKMFEE---------ASGIGRYS 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
           +  +     L     +      +   +  L  ++       +   +    EY Q K+   
Sbjct: 173 KRKQEALSSLERANEN---LDRLNDIVVNLKKELTK-----LEKQTQRFNEYKQIKDELT 224

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAK 249
            ++L +       + ++   +  E  +
Sbjct: 225 KLELVILVRDIVHWQKNLEQITNELKE 251


>gi|167581461|ref|ZP_02374335.1| ABC transporter, ATP-binding protein [Burkholderia thailandensis
           TXDOH]
          Length = 646

 Score = 42.6 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 71/205 (34%), Gaps = 40/205 (19%)

Query: 168 GRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            R  LL   G   S+   ++   +A L   +   R   I   +   +E +++        
Sbjct: 344 QRIGLLGANGQGKSTLIKTLAGTLAPLSGDVRTGRGLTIGYFAQHQLETLRE-------- 395

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                     D+S  A     A    +    D +      G    D+          IA 
Sbjct: 396 ----------DESALAHLARLAPDTREQELRDFLGGFNFSG----DMA------TAPIAP 435

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE+  + + + +              +LLLDE + HLD + R+AL   +      + 
Sbjct: 436 FSGGEKARLALALIIWQ---------KPNLLLLDEPTNHLDLETRHALTMALAQFEGTLI 486

Query: 347 MTGTDKSVFDSLNETAKFMRISNHQ 371
           +   D+ +  +  +  +FM ++ H+
Sbjct: 487 LVSHDRHLLRATTD--QFMLVAKHR 509


>gi|318080860|ref|ZP_07988192.1| exonuclease [Streptomyces sp. SA3_actF]
          Length = 132

 Score = 42.6 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFD----AQHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
          +++  L ++ F  +A +  + FD    A   +  G  G GKT++L+A+ +   G   G R
Sbjct: 1  MRLHRLTVTAFGPFAGTQTVDFDRLAEAGLFLLHGATGAGKTSLLDAVCYALYGVVPGHR 60


>gi|300781247|ref|ZP_07091101.1| DNA repair protein RecN [Corynebacterium genitalium ATCC 33030]
 gi|300532954|gb|EFK54015.1| DNA repair protein RecN [Corynebacterium genitalium ATCC 33030]
          Length = 584

 Score = 42.6 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 76/268 (28%), Gaps = 42/268 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I          + F    T+  G+ G GKT ++  +  L+ GR     + A   R
Sbjct: 2   LLDLTIDNLGVIPHSHVEFAPGLTVLTGETGAGKTMVVTGLRLLTGGR-----ADASKVR 56

Query: 67  IGSPSF-----FSTFARVEGMEGLADI---SIKLETRDDRSVRCLQINDVVIRVVDELNK 118
            G+        FST   V+G              E  ++      +      R    L  
Sbjct: 57  TGADHASVQGSFSTEGLVDGASHAVATLAEDAGAELDENGDYLAARSVKATGRSRAHLGG 116

Query: 119 -----------HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP---RHRRRMIDFER 164
                         +  +    D++      E+   LD    AI P    +      +  
Sbjct: 117 RTVPAATLADFTAHVLTIHGQNDQLRLLSPAEQLSALDSFDPAIAPLREAYGESFSAWRA 176

Query: 165 L---MRGRNRLLTEGYFDSSWC----------SSIEAQMAELGVKINIARVEMINALSSL 211
               ++ R     E   +                 E + AEL   I   R++ ++AL   
Sbjct: 177 AVKDLKERTEKRRELAQEVDRLEFAIGEIDEVDPQEGEDAELVETI--NRLQDVDALREA 234

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQS 239
             E V   +         G  DG    S
Sbjct: 235 AEEAVVAIDGAESVGGFGGSADGDASAS 262


>gi|256844122|ref|ZP_05549609.1| DNA helicase associated protein [Lactobacillus crispatus
          125-2-CHN]
 gi|256614027|gb|EEU19229.1| DNA helicase associated protein [Lactobacillus crispatus
          125-2-CHN]
          Length = 641

 Score = 42.6 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 4  RIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          R+++K L I  F+++    ++ F  + T F+G NG GKT  L A++ L
Sbjct: 5  RLRLKTLLIKGFKSFNEETKIDFS-KETAFIGTNGSGKTACLLALNKL 51


>gi|227486418|ref|ZP_03916734.1| exonuclease sbcC [Anaerococcus lactolyticus ATCC 51172]
 gi|227235599|gb|EEI85614.1| exonuclease sbcC [Anaerococcus lactolyticus ATCC 51172]
          Length = 1012

 Score = 42.6 bits (99), Expect = 0.094,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 87/266 (32%), Gaps = 21/266 (7%)

Query: 5   IKIKFLNISEFRNYA-SLRLVF----DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           +K++ + +  F  Y   + + F    D +  +  G  G GKT I +AISF   G   R  
Sbjct: 1   MKVRKVKLRGFLTYKDEVTIDFTRLFDKKIFLISGPTGSGKTTIFDAISFALYGEVPREI 60

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
           +  D+         S +   +      D+   L  R  + VR      V ++    +   
Sbjct: 61  AMEDL--------RSDYLSEDDDFTYVDLEFSLADRVYKIVRIPSQRAVELKNPKNIGHR 112

Query: 120 LRISWLVPSMDRI---FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLL 173
           + +  +      I      +    +  +                 F++ +  ++     L
Sbjct: 113 VELYDITGEKTLIADKIKEVDERIKDLVGLDKNQFSKVMLLAQGQFQKFLISKSDEKAAL 172

Query: 174 TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLD 233
               F +    +I+ ++ +   +      ++   L++++ +    +      L L    +
Sbjct: 173 LSDIFKTDALRAIQDELKKRANENKKMLAQVDKDLANVLSDNELLQGKISEDLILRRDFE 232

Query: 234 GKFD--QSFCALKEEYAKKLFDGRKM 257
             F       A +E + K++      
Sbjct: 233 NIFQIIAQTEADQEGFLKEILKSLDK 258


>gi|314934007|ref|ZP_07841372.1| putative membrane protein [Staphylococcus caprae C87]
 gi|313654157|gb|EFS17914.1| putative membrane protein [Staphylococcus caprae C87]
          Length = 979

 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 77/238 (32%), Gaps = 37/238 (15%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + ++ +   L  +++    + +N    
Sbjct: 729 YHSNLNRFNDLTQYLENQNYSYEMSSKLSEKTTAQLDEEDDTLARQVDQYNDQYLNMQAE 788

Query: 207 --ALSSLIMEYVQKENFP---HIKLSLTGFL-----DGKFDQSFCALKEEYAKKLFDGRK 256
              L++ I             H   SL   L     D         L EE+ K++ D R 
Sbjct: 789 VSDLTAQINHMETDSTLAQLRHEYYSLKNRLNDIAKDWTSLSYLQNLVEEHIKQIKDKRL 848

Query: 257 MDSMSR------------RTLIGPHRSD-LIVDYCDKAI-TIAHGSTGEQKVVLVGIFLA 302
              +               T+I     D + V + +  +      S   ++++ V + ++
Sbjct: 849 PQVIQEAVSIFKYLTNGAYTMINYTGDDSIHVKHDNGQVFEPVELSQSTKELLYVALRIS 908

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIF-MTGTDKSVFDS 357
             +++         +++D+   H D+ ++  +   + ++    Q+   T T  ++  S
Sbjct: 909 LIKVLKPYY--PFPIIVDDAFVHFDKHRKERMLNYLRELSQNYQVLYFTCTKDNIIPS 964


>gi|302384637|ref|YP_003820459.1| hypothetical protein Closa_0193 [Clostridium saccharolyticum WM1]
 gi|302195265|gb|ADL02836.1| hypothetical protein Closa_0193 [Clostridium saccharolyticum WM1]
          Length = 878

 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 15/62 (24%)

Query: 5  IKIKFLNISEFRNY------------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          ++I  + I  FR Y              L    DA   IF G NG GKT   EAI +   
Sbjct: 1  MRIAKVYIKNFRGYGENNTTDEMYLFEHLN---DADFVIFSGYNGFGKTGFFEAIEWCIT 57

Query: 53 GR 54
          G+
Sbjct: 58 GK 59


>gi|302309004|ref|NP_986184.2| AFR637Wp [Ashbya gossypii ATCC 10895]
 gi|299790898|gb|AAS54008.2| AFR637Wp [Ashbya gossypii ATCC 10895]
          Length = 1296

 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 6  KIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           I  L+I   R++ +     + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  AIHNLSIQGIRSFDARDKEVIKFGKPLTLIVGANGCGKTTIIECLKYATTG 53


>gi|298293089|ref|YP_003695028.1| DNA repair protein RecN [Starkeya novella DSM 506]
 gi|296929600|gb|ADH90409.1| DNA repair protein RecN [Starkeya novella DSM 506]
          Length = 559

 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 47/159 (29%), Gaps = 21/159 (13%)

Query: 10  LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG- 68
           L+I +      L L F    T+  G+ G GK+ +L+A +    GRG        + R G 
Sbjct: 5   LSIRDIVLIERLDLSFQPGLTVLTGETGAGKSILLDAFTLALGGRG-----DGALVRQGV 59

Query: 69  ------------SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV-VDE 115
                       +           G++    + ++     D   R    +  V    +  
Sbjct: 60  GQGQVTAEFDLAADHPARAVLAEAGIDDDGALVLRRVQHADGRTRAFVNDQSVSAQMLRN 119

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
           L + L           +        R  LD     ++  
Sbjct: 120 LGRRLVEIHGQHDDRALV--DPSSHRALLDAYGGLVERA 156


>gi|296285036|ref|ZP_06863034.1| ATPase [Citromicrobium bathyomarinum JL354]
          Length = 565

 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 69/206 (33%), Gaps = 28/206 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +       +L L F     +  G+ G GK+ +L+A+  +   R     +   + R
Sbjct: 13  LTQLAVRNVVLIEALDLDFGRGLGVLTGETGAGKSILLDALGLVLGNR-----AETALVR 67

Query: 67  IGSPSFFST----FARV--EGMEGLADISIKLETRD----DRSVRCLQINDVVIRVVDEL 116
            G+     T    FA +     E L D  +++E  +     R V+    +   +      
Sbjct: 68  SGADQASVTASFEFATLPPALAEALEDAGVEIEPGEPLIIRRQVKADGGSKAFVNDQSAS 127

Query: 117 NKHLRISWLVP---------SMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
              LR   L P             + +      R+ LDR   A   +  R   ++++   
Sbjct: 128 VGLLRN--LAPILVELHGQHDDRGLVN--PRGHRQLLDRFAGADTAKVARNWREWQKASG 183

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
                       S+    + A +AEL
Sbjct: 184 ALEEARAAIDAASAEQDLLLAHLAEL 209


>gi|153814930|ref|ZP_01967598.1| hypothetical protein RUMTOR_01145 [Ruminococcus torques ATCC 27756]
 gi|145847961|gb|EDK24879.1| hypothetical protein RUMTOR_01145 [Ruminococcus torques ATCC 27756]
          Length = 608

 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
              I H S G++K V++   L+             +LLLDE + HLDE     L   +  
Sbjct: 117 DQKIEHLSGGQKKRVVLAKILS---------DDFDVLLLDEPTNHLDEAMIRWLEEYLRS 167

Query: 341 IGSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371
               + M   D+   D +    + + IS+ +
Sbjct: 168 YKGTVIMVTHDRYFLDRVTN--RILEISHGK 196


>gi|221066627|ref|ZP_03542732.1| chromosome segregation protein SMC [Comamonas testosteroni KF-1]
 gi|220711650|gb|EED67018.1| chromosome segregation protein SMC [Comamonas testosteroni KF-1]
          Length = 1175

 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++A     +   Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1  MRLNSIKLSGFKSFAEPTNFILPGQMVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES 60

Query: 61 YADVTRIG 68
            DV   G
Sbjct: 61 MQDVIFNG 68


>gi|194337620|ref|YP_002019414.1| putative ATP-binding protein [Pelodictyon phaeoclathratiforme
          BU-1]
 gi|194310097|gb|ACF44797.1| putative ATP-binding protein [Pelodictyon phaeoclathratiforme
          BU-1]
          Length = 353

 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS 48
          I+ L+I     +      F     + +G+NG GKT++L+ + 
Sbjct: 2  IQQLSIKNLTVFPEADFKFGRNLNVIIGENGTGKTHLLKILY 43


>gi|268679583|ref|YP_003304014.1| hypothetical protein Sdel_0949 [Sulfurospirillum deleyianum DSM
          6946]
 gi|268617614|gb|ACZ11979.1| conserved hypothetical protein [Sulfurospirillum deleyianum DSM
          6946]
          Length = 603

 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+  L I  FR +    + FD   T  +G+N +GK+++L+ I  L
Sbjct: 1  MKLHSLRIEGFRRFVDTTIYFDDA-TFLIGENNIGKSSVLKTIELL 45


>gi|258515773|ref|YP_003191995.1| DNA repair protein RecN [Desulfotomaculum acetoxidans DSM 771]
 gi|257779478|gb|ACV63372.1| DNA repair protein RecN [Desulfotomaculum acetoxidans DSM 771]
          Length = 562

 Score = 42.6 bits (99), Expect = 0.095,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 22/132 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADV 64
           + I  L +  F    +L + FD    +  G+ G GK+ +L+A+S    GR        + 
Sbjct: 1   MLIT-LTVQNFGIIENLLMEFDRGLNVLTGETGAGKSIVLDALSAALGGR-----CSPEA 54

Query: 65  TRIGS-PSFFSTFARVE------------GMEGLADISIKLETRDDRSVRCL-QIND--V 108
            R     +   T   ++            G+E   D ++ +    +RS + L +IN   V
Sbjct: 55  IRYEQKKALVETQFYIDNIPRINNLLIEAGLEPEEDGTLIMTREINRSGKNLCRINGRSV 114

Query: 109 VIRVVDELNKHL 120
           V+ +  E+ K+L
Sbjct: 115 VLSIYREIGKYL 126


>gi|327287388|ref|XP_003228411.1| PREDICTED: ATP-binding cassette sub-family A member 8-B-like
           [Anolis carolinensis]
          Length = 1543

 Score = 42.6 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 13/100 (13%)

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
             + +  +H S G+++ + + I            G   ++LLDE +A LD   R+ ++ I
Sbjct: 601 GIQNVQASHLSGGQKRKLSLAITF---------LGEPQVMLLDEPTAGLDPYSRHQVWSI 651

Query: 338 VTDIGS--QIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           + +  +   I  T       D L     F  IS  +  C+
Sbjct: 652 LNERKADRIILFTTQFMEEADILANRKAF--ISYGKLTCV 689


>gi|312130609|ref|YP_003997949.1| aaa atpase [Leadbetterella byssophila DSM 17132]
 gi|311907155|gb|ADQ17596.1| AAA ATPase [Leadbetterella byssophila DSM 17132]
          Length = 267

 Score = 42.6 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 16 RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          RN  S  +   +  T  VG+NG GK+ +LEAI++ S
Sbjct: 25 RNLPS--ISLTSPITFLVGENGAGKSTLLEAIAYAS 58


>gi|282881015|ref|ZP_06289705.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305091|gb|EFA97161.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
          Length = 327

 Score = 42.6 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +KIK + I    N  +          I  G+NG  KT +L+ I+ L 
Sbjct: 1  MKIKKIKIERLYNRYNFEWELSPNVNILAGENGSYKTTLLKIIAALC 47


>gi|237785953|ref|YP_002906658.1| ABC transporter ATP-binding protein [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758865|gb|ACR18115.1| ABC-type transport system, ATP-binding protein [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 592

 Score = 42.6 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
           D    +   S G+Q+ V + +  A         G   ILLLDE + HL  D    +   +
Sbjct: 497 DAIRPVGDLSIGQQRRVALALIAA---------GPPHILLLDEPTNHLSVDLIEEVQDAI 547

Query: 339 TDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQAL 373
                 + +   D+ + + L   A+ + + +H+ +
Sbjct: 548 ASAEGTVLVVTHDRRMIERLE--ARHLIVDHHEVV 580



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 55/186 (29%), Gaps = 34/186 (18%)

Query: 184 SSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCAL 243
             +EA     G  +         AL   +      E             D + D+     
Sbjct: 99  QELEAPFDSTGAMLIK------EALGPSLRRLQAFEEATEA------LADAETDEEVARA 146

Query: 244 KEEYAKKLFD---------GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG--STGEQ 292
            E Y+    D             D +     +G    D      +  ++      S G++
Sbjct: 147 NERYSTIFSDVTAHDDWNAEHNADIIL--DSLGLTNDDSTTVDGEPLLSRRTADLSGGQR 204

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDK 352
             + + + L              ILLLDE + HLD+  R  +   + +    + +   D+
Sbjct: 205 ARLGLALTL---------IRNPEILLLDEPTNHLDDRGRELVIDHIHNHAGVVVVATHDR 255

Query: 353 SVFDSL 358
              D++
Sbjct: 256 DFLDAV 261


>gi|237743337|ref|ZP_04573818.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
 gi|229433116|gb|EEO43328.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
          Length = 697

 Score = 42.6 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          ++ +K + +  FR   + +L      ++ +G N  GKT++L
Sbjct: 6  KMVLKEIVVENFRLLKNFKLELKEDLSLIIGKNNCGKTSVL 46


>gi|226289610|gb|EEH45094.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1179

 Score = 42.6 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIVEVVIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSKSPIGFEEYASISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|194766347|ref|XP_001965286.1| GF24329 [Drosophila ananassae]
 gi|190617896|gb|EDV33420.1| GF24329 [Drosophila ananassae]
          Length = 1404

 Score = 42.6 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 8/97 (8%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            R+ IK +    F++YA  + L  F    T  +G NG GK+N+++++ F+   R    R 
Sbjct: 74  PRLIIKKIVNRNFKSYAGEVELGPFHQSFTAIIGPNGSGKSNVIDSMMFVFGCRANRIRC 133

Query: 59  ASYADVT----RIGSPSFFSTFARVEGMEGLADISIK 91
              + +     +  +    S     E +    D S +
Sbjct: 134 KKVSTLIHSSSQFPNIRSCSVAVHFEQVVDKGDGSCE 170


>gi|170590488|ref|XP_001900004.1| SMC family, C-terminal domain containing protein [Brugia malayi]
 gi|158592636|gb|EDP31234.1| SMC family, C-terminal domain containing protein [Brugia malayi]
          Length = 1098

 Score = 42.6 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFD-AQHTIFV--GDNGVGKTNILEAISFLSPGRG---FRRA 59
           +I  + +  F  + SL++ FD +    F   G NG GK+ +  A++    GRG    R  
Sbjct: 44  RIASIELFNFMCHESLKINFDLSNRNCFFIGGSNGSGKSALFAALNMGLGGRGSQNERGN 103

Query: 60  SYADVTRIGSPSF 72
           +     + G    
Sbjct: 104 AMKQYIKDGQNRA 116


>gi|22538149|ref|NP_689000.1| hypothetical protein SAG2014 [Streptococcus agalactiae 2603V/R]
 gi|22535057|gb|AAN00873.1|AE014282_15 hypothetical protein SAG2014 [Streptococcus agalactiae 2603V/R]
          Length = 449

 Score = 42.6 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 8  KFLNISEFRNYASLRLVFDAQ-----HTIFVGDNGVGKTNILEAISFL 50
            +    F ++++L      +          G+NG GKTNI+EA   L
Sbjct: 3  SKIEFKNFMSFSNLTFDLLNRGKCKDIIAIYGENGSGKTNIVEAFKLL 50


>gi|20094625|ref|NP_614472.1| ABC transporter ATPase [Methanopyrus kandleri AV19]
 gi|19887777|gb|AAM02402.1| ATPase subunit of an ABC-type transport system, contains a
           duplicated ATPase domain [Methanopyrus kandleri AV19]
          Length = 568

 Score = 42.6 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 17/138 (12%)

Query: 210 SLIMEYVQKENFPHIKLSLTGFL-DGKFDQSFCALKE-----EYAKKLFDGRKMDSMSRR 263
                  ++       L +   L D   +++   LKE     +   +LF     D + R 
Sbjct: 385 EQARRRAEELGLGEEALDVLYALTDLPREEAEAKLKELDLSPDILDELFPKFPSDEVERF 444

Query: 264 TLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
                   DL ++  D  +     S G+Q  V + + LA             +LLLDE  
Sbjct: 445 ARPVFEEFDLPMEVLD--MKFGELSGGQQVRVAIALELAT---------EPEVLLLDEPF 493

Query: 324 AHLDEDKRNALFRIVTDI 341
             LD     ++   +  I
Sbjct: 494 GDLDPVTLRSVANSIKRI 511


>gi|320167041|gb|EFW43940.1| cohesin complex subunit [Capsaspora owczarzaki ATCC 30864]
          Length = 1147

 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 31/221 (14%)

Query: 154  RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
            ++       + L+  +  L            S++         I +   ++   L+ +  
Sbjct: 928  QYMNFSSQRQMLLERKQDLDKGDQAIKELLESLDH---RKDAAIQLTFQQVAKNLTDVFA 984

Query: 214  EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
            E V      H KL +         +    L+ E A +  D R++  +     +  H    
Sbjct: 985  ELV---PGGHAKLVMQL-------KDARELEAEQASRSGDSRRLPPVEAYVGVSIH---- 1030

Query: 274  IVDYCDKAITIAHGST---GEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
             V +  K+           G++ +V + +  A           AP  L DE+   LDE  
Sbjct: 1031 -VSFTGKSSETHLMQQLSGGQKTLVALALIFA-----IQRCDPAPFYLFDELDQALDETH 1084

Query: 331  RNALFRIVTDI--GSQIFMTGTDKSVFDSLNETAKFMRISN 369
            R A+  ++  +   +Q   T       + L +  K   +++
Sbjct: 1085 RTAVAAMIHRLSDRAQFLTTT---FKPEMLKDADKVYAVTH 1122


>gi|319795282|ref|YP_004156922.1| urea ABC transporter, ATP-binding protein urtd [Variovorax
           paradoxus EPS]
 gi|315597745|gb|ADU38811.1| urea ABC transporter, ATP-binding protein UrtD [Variovorax
           paradoxus EPS]
          Length = 292

 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 13/151 (8%)

Query: 9   FLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAIS----------FLSPGRGFR 57
            ++   F+    L L          +G NG GKT +++ I+          F        
Sbjct: 58  SVSFDGFKAINKLSLDIAPGELRCIIGPNGAGKTTMMDIITGKTRPDSGTVFFGSTIDLL 117

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELN 117
           R   AD+ ++G    F      E +    ++ + L+T   + VR   +  +     D L 
Sbjct: 118 RHREADIAQLGIGRKFQKPTVFEHLTVFENLELALKTN--KGVRASMLFRLDSAQSDRLA 175

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
           + L    L  S+ R+   LS  ++++L+  +
Sbjct: 176 EVLETIHLADSVSRLAGNLSHGQKQWLEIGM 206


>gi|288817572|ref|YP_003431919.1| DNA repair protein RecN [Hydrogenobacter thermophilus TK-6]
 gi|288786971|dbj|BAI68718.1| DNA repair protein RecN [Hydrogenobacter thermophilus TK-6]
 gi|308751172|gb|ADO44655.1| DNA repair protein RecN [Hydrogenobacter thermophilus TK-6]
          Length = 521

 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 24/195 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + + +F       + F     +  G++G GK+  + ++ FL                
Sbjct: 2   LVRIYLEDFFIIKHQEVEFGEGLNVLTGESGAGKSLTVSSLLFLMG-------------- 47

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
                   T    E ++    I ++ E +  +S   L     + +VV E+     +  L 
Sbjct: 48  HQQEYPEGTAVEAEFLKDGEQILVRREIKKGKSRYYLNGVGSIQKVVKEIVS--SMVLLQ 105

Query: 127 PSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSI 186
              DR+       +R   DR    +D        ++E+ +  R   L E   D  W    
Sbjct: 106 GQNDRMKILRRDFQRDLYDRFAGVLD-----LRREYEK-LYARLEHLKEKLRD--WNERQ 157

Query: 187 EAQMAELGVKINIAR 201
             +   L V +   R
Sbjct: 158 RERKIRLAVILEELR 172


>gi|282858458|ref|ZP_06267637.1| putative DNA sulfur modification protein DndD [Prevotella bivia
          JCVIHMP010]
 gi|282588774|gb|EFB93900.1| putative DNA sulfur modification protein DndD [Prevotella bivia
          JCVIHMP010]
          Length = 704

 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEFRNYA---SLRLVFDAQHTIFV--GDNGVGKTNILEAISFLSPGR 54
          + I+ + ++ FR Y     + L  D    + +  G+NG GKT  L ++ +   G+
Sbjct: 1  MTIREIELNNFRIYKGKNKIELFPDGNRNLIIVSGNNGFGKTTFLMSLVWCLYGK 55


>gi|241890103|ref|ZP_04777401.1| DNA repair protein RecN [Gemella haemolysans ATCC 10379]
 gi|241863725|gb|EER68109.1| DNA repair protein RecN [Gemella haemolysans ATCC 10379]
          Length = 566

 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 83/247 (33%), Gaps = 24/247 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  LNI +F       +      T+  G+ G GK+ IL AIS LS   G R ++     R
Sbjct: 2   LIQLNIKQFGIIEKATIELKNGLTVLSGETGAGKSMILAAISQLS---GQRTSTS--YIR 56

Query: 67  IGSPSFFSTFA-------RVEGMEGLADISIKLETRDDR------SVRCLQINDVVIRVV 113
            G                 V+ +    D+ ++ E    R           +IN  ++ + 
Sbjct: 57  YGEDKASVEGVFDFPKSKEVKEIFNELDLDLEDEVIVVRRDIYSSGKSVCRINGTIVNLS 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF-AIDPRHRRRMIDFE--RLMRGRN 170
                   +  +    D     +       +D      I P + +    ++  ++++ + 
Sbjct: 117 TLKKVAAHLLDIHEQHDNQVLLVEKNHLNLVDSFNREKIQPVYIKYKEKYKEYQIIKEKI 176

Query: 171 RLLTEGYFDSSW-CSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
             L +   D       ++ Q  EL         ++   L   I      E   ++  S+T
Sbjct: 177 DNLKQQESDVLQKVDFLKFQYKELSQMKLKKDEDL--ELEKDIDYLENFEKVNNLAHSIT 234

Query: 230 GFLDGKF 236
             +DG++
Sbjct: 235 EGIDGEY 241


>gi|240948079|ref|ZP_04752489.1| DNA repair protein RecN [Actinobacillus minor NM305]
 gi|240297559|gb|EER48051.1| DNA repair protein RecN [Actinobacillus minor NM305]
          Length = 559

 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 22/131 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F     L L  +   ++  G+ G GK+  ++A+      R       + + R
Sbjct: 2   LTQLTINNFAIVRHLNLELNEGMSVITGETGAGKSIGIDALGLCLGYRS-----ESSMIR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQIND-VV 109
            G+     T                   +   +   +  ++     +   +    N  + 
Sbjct: 57  NGADKADITATFQMQPDSPAYLWLKEQELLDEDNPYECILRRMINLEGRSKAFVNNRPLP 116

Query: 110 IRVVDELNKHL 120
           +  + EL ++L
Sbjct: 117 VSQLRELGQYL 127


>gi|289208744|ref|YP_003460810.1| chromosome segregation protein SMC [Thioalkalivibrio sp. K90mix]
 gi|288944375|gb|ADC72074.1| chromosome segregation protein SMC [Thioalkalivibrio sp. K90mix]
          Length = 1164

 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 66/202 (32%), Gaps = 36/202 (17%)

Query: 173  LTEGYFDSSWCSSIEAQMAELGVKI----------------NIARVEMINALSSLIMEYV 216
            L EG  + +   + E  +AEL  KI                   R   +    + ++E +
Sbjct: 934  LAEGLAEDASVPAWEQAIAELDRKIERLGPINLAAIDEARSLEERSRYLEEQHADLIEAL 993

Query: 217  QKENFP--HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLI 274
            +        I           FDQ    L +++ +    G     M+   L+     D  
Sbjct: 994  ETLEAAMHRIDRETRQLFKQTFDQVNAGLGQKFQRLFGGGEARLEMTGDDLL-----DTG 1048

Query: 275  VDYCDKAITIAHG-----STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDED 329
            V    +            S GE+ +    +  A   L       AP  +LDE+ A LDE 
Sbjct: 1049 VTIMARPPGKRLSTIHLMSGGEKALTASALVFAIFEL-----NPAPFCMLDEVDAPLDEA 1103

Query: 330  KRNALFRIVTDIGSQ---IFMT 348
                   ++ D+  Q   IF+T
Sbjct: 1104 NVGRFCELLEDMSEQIQFIFIT 1125



 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 88/259 (33%), Gaps = 22/259 (8%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++     LV        VG NG GK+N ++A+ ++   S  +  R  S
Sbjct: 1   MRLARIKLAGFKSFVDPTTLVLPGNRVGIVGPNGCGKSNTIDAVRWVMGESSAKHLRGDS 60

Query: 61  YADVTRIGSPS------------FFSTFARVEGMEGLADISIKLETRDDRSVR-CLQIND 107
             DV   GS S            F ++  R+ G E  A   I +     R  +    +N 
Sbjct: 61  SEDVIFNGSSSRKPVGQASIELIFDNSDGRL-GGEYSAYGEIAVRRALTRDGQSKYFLNG 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR 167
              R  D ++  L    L P    I     + R          +       +  ++   R
Sbjct: 120 QRARKRDVVDLFLGT-GLGPRSYAIIEQGMIARLIDARPEELRVYLEEAAGISKYKERRR 178

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS 227
                +     +      +  ++A+   ++   R          +    +++    I L 
Sbjct: 179 ETENRVRHTRENLERLDDVRDEVAKQAERL--NRQAATAEKYQTLAAERRQKRAEAILLR 236

Query: 228 LTGFLDGKFDQSFCALKEE 246
           L    + + + S   L++ 
Sbjct: 237 LRAQ-EQELEASRQRLQDA 254


>gi|147919942|ref|YP_686305.1| ABC-type transport system, ATPase component [uncultured
           methanogenic archaeon RC-I]
 gi|110621701|emb|CAJ36979.1| ABC-type transport system, ATPase component [uncultured
           methanogenic archaeon RC-I]
          Length = 274

 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 17/95 (17%)

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--- 341
            + S G++++V +   LA             I+ +DE ++ LDE     +  I+ ++   
Sbjct: 130 NYLSGGQKRLVAIAGVLAM---------RPKIICMDEPTSDLDEVHSRRIVDIIEEMRRF 180

Query: 342 -GSQIFMTGTDKSVFDSLNETAKFMR----ISNHQ 371
            G  + ++  D ++   + +    +R    I++ Q
Sbjct: 181 HGISVVISTHDLNLASRIADRVCIVREGSIIADGQ 215


>gi|332309233|ref|NP_001193797.1| RAD50 homolog [Bos taurus]
 gi|296485646|gb|DAA27761.1| RAD50 homolog [Bos taurus]
          Length = 1312

 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSIQGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|17227454|ref|NP_478505.1| hypothetical protein all8080 [Nostoc sp. PCC 7120]
 gi|17134853|dbj|BAB77410.1| all8080 [Nostoc sp. PCC 7120]
          Length = 345

 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          ++  + +  F++ A   L    +  I +G NG GK+N +
Sbjct: 8  QLSRIVLKGFKSIAKCDLEIS-RVNILIGANGAGKSNFI 45


>gi|124268519|ref|YP_001022523.1| putative DNA repair protein [Methylibium petroleiphilum PM1]
 gi|124261294|gb|ABM96288.1| putative DNA repair protein [Methylibium petroleiphilum PM1]
          Length = 573

 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 22/131 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K + + +F    +L L   A  T   G+ G GK+ +++A+       G R    A V R
Sbjct: 2   LKRIALRDFVIVPALELDLQAGFTALTGETGAGKSILVDALQLAL---GHRG--DAGVVR 56

Query: 67  IGSPS---------------FFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV-- 109
            G+                 + +     +  +G  D  +   T D +      IN     
Sbjct: 57  EGATRAEISAEFDTPASLRPWLADAGFADEEDGGDDPLLLRRTLDAQGKSRAWINGSPAT 116

Query: 110 IRVVDELNKHL 120
           I  + E  +HL
Sbjct: 117 IGQLREAGEHL 127


>gi|116617841|ref|YP_818212.1| DNA repair ATPase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
 gi|116096688|gb|ABJ61839.1| DNA repair ATPase [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 787

 Score = 42.6 bits (99), Expect = 0.097,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 14/124 (11%)

Query: 242 ALKEEYAKKLFDGRKMDSM-SRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
            L  +Y +KL  GR ++    + TL             +        STG Q+ + V   
Sbjct: 672 QLATDYFQKLTAGRYVNIQFDKNTLQVVRNDRQKFSVVE-------LSTGTQEQLYVAFR 724

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQI--FMTGTDKSVFD 356
           LA +++I +       +L+D+   + D  ++  +  ++TDIG   Q+  +        FD
Sbjct: 725 LALSQVIKDIINMP--ILVDDGFVNFDLSRKQNVIALLTDIGRNQQVIYWTAAIHNEHFD 782

Query: 357 SLNE 360
            + E
Sbjct: 783 KVIE 786



 Score = 41.4 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          +KIK L IS F  ++           +  G N  GKT +
Sbjct: 1  MKIKRLEISGFGRWSQEAFDLSDGLQVIFGQNESGKTTL 39


>gi|325972143|ref|YP_004248334.1| hypothetical protein SpiBuddy_2322 [Spirochaeta sp. Buddy]
 gi|324027381|gb|ADY14140.1| hypothetical protein SpiBuddy_2322 [Spirochaeta sp. Buddy]
          Length = 475

 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 10/101 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFD-------AQHTIFVGDNGVGKTNILEAISFLSP--GRG 55
           ++I  ++I  F+N     L  +       A      G NG GKT +++++  L       
Sbjct: 6   VRIVGISIHNFKNVIDGSLSLENTRKNYRASIVGLYGQNGSGKTALIDSLELLKHVLCGS 65

Query: 56  FRRASYADVTRIGSPSFFSTF-ARVEGMEGLADISIKLETR 95
                +A+   + S      F   V  +E  + +S +   +
Sbjct: 66  TIPGKFAEFINVDSDVATLVFEFAVNTLEDTSTLSYQFSIK 106


>gi|317401958|gb|EFV82560.1| chromosome partition protein [Achromobacter xylosoxidans C54]
          Length = 1177

 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
          +++  L ++ F+++    ++    Q    VG NG GK+NI++A+   L   +    R  S
Sbjct: 1  MRLTQLKLAGFKSFVDPTVIPVPSQLVGVVGPNGCGKSNIIDAVRWVLGEAKASELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|291235426|ref|XP_002737646.1| PREDICTED: SMC (structural maintenance of chromosomes) family
           member (smc-4)-like [Saccoglossus kowalevskii]
          Length = 1172

 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 74/223 (33%), Gaps = 33/223 (14%)

Query: 3   NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            R+ I  +    F++YA  R    F    +  VG NG GK+N+++A+ F+   R    R 
Sbjct: 76  PRLMITHIENENFKSYAGKRTLGPFHKNFSSIVGPNGSGKSNVIDAMLFVFGYRANKIRS 135

Query: 59  ASYADVTRIGSPS----------FFSTFARVEGMEGLA----DISIKLETRDDRSVRCLQ 104
              + +                  F     ++G E        +++      D S     
Sbjct: 136 KKISVLIHNSENHKNINSCSVHVHFQKIIDLDGDEYEVVPNSKLTVSRSAYRDNSSN-YY 194

Query: 105 INDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER 164
           +N        E+   LR   +    +R                +  + P+    + + E 
Sbjct: 195 LNGKKT-PFKEIAVLLRKVGIDLDHNRFLILQGEV------EQISMMKPK---ALTEHEE 244

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
            M      L +    S +   IE  +A+   ++N  R E +N 
Sbjct: 245 GMLE---YLEDIIGSSKYKEPIEE-LAKQVEELNEQRGEKLNR 283


>gi|268611909|ref|ZP_06145636.1| hypothetical protein RflaF_20681 [Ruminococcus flavefaciens FD-1]
          Length = 245

 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 4/38 (10%)

Query: 16 RNYASL----RLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +N  ++     L F +  T FVG+NG GK+ +LEAI+ 
Sbjct: 26 KNIEAIRSIDELYFHSPVTFFVGENGSGKSTLLEAIAV 63


>gi|255284129|ref|ZP_05348684.1| DNA repair protein RecN [Bryantella formatexigens DSM 14469]
 gi|255265303|gb|EET58508.1| DNA repair protein RecN [Bryantella formatexigens DSM 14469]
          Length = 559

 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 88/286 (30%), Gaps = 66/286 (23%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++        L + F +   I  G+ G GK+ ++ +I+     + F+        R
Sbjct: 2   LLNLHVKNMALIRELEMDFGSGLNILTGETGAGKSILIGSINVALGMQSFKG-----FAR 56

Query: 67  IGSPSFFSTFA----------RVEGME-GLADISIKLETRDDRSVRCLQINDV--VIRVV 113
            G+ +                ++E ++  + D  + L  R   +    ++N     + VV
Sbjct: 57  EGADTALVELVFSVESDALREKIEALDISVEDGQVILSRRLSGTRSISKVNGETVPLSVV 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFER----LMRGR 169
            EL   L           +                      H R + +F R     ++ +
Sbjct: 117 RELASLLIDIHGQHEHQSLLY-----------------KKNHLRILDEFAREELGSLKEK 159

Query: 170 NRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
           N  L                 AE        R+E     SS + E  +K+    ++  + 
Sbjct: 160 NAEL----------------FAEYSA--LKKRLE-----SSAMDEAARKKEADFLQFEVD 196

Query: 230 GFLDGKFDQSFCALKEEYAKKLFDGRK----MDSMSRRTLIGPHRS 271
              +G          E   +K+ + R+         R T  GP  +
Sbjct: 197 EIENGALRPGEDEEVEAQYRKMANARRIAEDAAEAYRLTSEGPGNA 242


>gi|225682237|gb|EEH20521.1| condensin subunit Cut14 [Paracoccidioides brasiliensis Pb03]
          Length = 1179

 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIVEVVIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E  A IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSKSPIGFEEYASISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|157148186|ref|YP_001455505.1| hypothetical protein CKO_03997 [Citrobacter koseri ATCC BAA-895]
 gi|157085391|gb|ABV15069.1| hypothetical protein CKO_03997 [Citrobacter koseri ATCC BAA-895]
          Length = 433

 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 59/368 (16%), Positives = 112/368 (30%), Gaps = 71/368 (19%)

Query: 28  QHTIFVGDNGVGKTNILEAISFL--SPGRGFRRASYADVTR------------IGSP--- 70
           +  +  G NG GK++ +EA+ FL     RGF  +S  D  R                   
Sbjct: 47  KVAVIYGANGAGKSSFVEALDFLQSYILRGFADSSQNDSIRTRFIDREIPKFIFDEEQLT 106

Query: 71  ---SFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL---NKHLRISW 124
               F  +F    G      +SI  +  +   +       V  + +       +     +
Sbjct: 107 APTDFEISFIGTTGERYQYTLSIGTDAIEAEGLWVYSKKGVRPKTIISRVYNAETNEFEY 166

Query: 125 LVPSMD--------RIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMR-GRNRLLTE 175
             PS+          I    + +R  F+  +       H   +   +  +   R  L+  
Sbjct: 167 YCPSLQIDKKTYEVAIEKANNSKRSPFVSIL-------HAYDVSQLDEFINWFRGDLIVS 219

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK--ENFPHIKLSLTGFLD 233
              +               V    +R   ++ L+    +   K  E      LS++    
Sbjct: 220 SNRNDD-------------VFRMASRYSFLDDLADGDEQKKNKILEFLNKFDLSISDISV 266

Query: 234 GKFDQSF-CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
            K + +    + EE  K +        +   T               K I     S+G +
Sbjct: 267 TKKNVTLPDEMPEEMKKMILSDVGFQIVLEHTTS---------SGIKKNIPYERLSSGTK 317

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS---QIFMTG 349
           K+  +   L    L+    G   +L+LDE  + L      A+F ++        Q+ +T 
Sbjct: 318 KLFDLSGIL----LLCCEAGEKSVLVLDEFESSLHPYIVRAIFELMVKHSERLLQLILTT 373

Query: 350 TDKSVFDS 357
               + D+
Sbjct: 374 HSNVLLDT 381


>gi|153010465|ref|YP_001371679.1| ATPase involved in DNA repair-like protein [Ochrobactrum anthropi
           ATCC 49188]
 gi|151562353|gb|ABS15850.1| ATPase involved in DNA repair-like protein [Ochrobactrum anthropi
           ATCC 49188]
          Length = 875

 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%)

Query: 5   IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           + +K L +  FR +   LR+  F     I V  N  GK+ +LEA+         R ++  
Sbjct: 1   MILKSLEVENFRKFREPLRIDGFTDGLNIVVEPNETGKSTLLEALRAAFFI---RYSAKT 57

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
           ++ R   P+      RV    GL   + +LE +  +S   +++     R   +
Sbjct: 58  ELVRSYVPTGDDVAPRVTVGFGLNGQTWRLEKQFMKSP-SVRLTGASGRRESD 109


>gi|119963599|ref|YP_947417.1| DNA repair protein RecN [Arthrobacter aurescens TC1]
 gi|119950458|gb|ABM09369.1| DNA repair protein RecN [Arthrobacter aurescens TC1]
          Length = 579

 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 69/216 (31%), Gaps = 31/216 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L +          L      ++  G+ G GKT ++ A+  L   R      
Sbjct: 1   MLEELRIRDLGV-----ITDAALPLGPGLSVVTGETGAGKTMVVTAVGLLLGARS----- 50

Query: 61  YADVTRIGSPSFFSTF------------------ARVEGMEGLADISIKLETRDDRSVRC 102
            A   R G+ S  +                       E  +G+A++ +      D   R 
Sbjct: 51  DAGAVRSGAKSASAEAVLKLDPAHSAVERAKEAGGEAEEFDGVAELLLARTVGADGRSRA 110

Query: 103 -LQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRM 159
            +      + V+ EL + L +        R+ S  +      RF    +      ++   
Sbjct: 111 YVGGRAAPVGVLAELGESLVVVHGQSDQIRLKSATAQRHALDRFAGAPLAKSLGEYQELF 170

Query: 160 IDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGV 195
             ++ +      L +E         S++A + E+  
Sbjct: 171 NHWKAIQAELETLRSEARERLREAESLDADLKEIDE 206


>gi|28316404|dbj|BAC56937.1| structural maintenance of chromosomes protein 6 [Xenopus laevis]
          Length = 1128

 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 12/96 (12%)

Query: 7   IKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           I+ + +  F  ++ L    F       +G+NG GK+ +L A+     G+       A +T
Sbjct: 87  IESIFLRNFMCHSMLGPFRFGPNVNFVIGNNGSGKSAVLTALIVGLGGK-------AAIT 139

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101
             GS    S    V+  +  A+ISI L  R   + +
Sbjct: 140 NRGS----SIKGFVKEGQTFAEISITLRNRGQDAYK 171


>gi|114321461|ref|YP_743144.1| hypothetical protein Mlg_2314 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227855|gb|ABI57654.1| conserved hypothetical protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 376

 Score = 42.6 bits (99), Expect = 0.098,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 6  KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
          +I  ++I  FR+ A +  L    Q  + +G NG GK+N++     LS     +  +    
Sbjct: 10 RISRVSIRGFRSLACVENLEL-PQLAVLIGANGSGKSNLIRFFEMLSY--SLKGRNLQQF 66

Query: 64 VTRIGSPSFFSTFARVEGMEGLADISIKLE 93
          V   G       F         A+I+++ E
Sbjct: 67 VIEKGGGDDQLFFGARTTSRLEAEIALETE 96


>gi|317500442|ref|ZP_07958666.1| ABC transporter [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089551|ref|ZP_08338450.1| hypothetical protein HMPREF1025_02033 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898197|gb|EFV20244.1| ABC transporter [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330404919|gb|EGG84457.1| hypothetical protein HMPREF1025_02033 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 601

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
              I H S G++K V++   L+             +LLLDE + HLDE     L   +  
Sbjct: 110 DQKIEHLSGGQKKRVVLAKILS---------DDFDVLLLDEPTNHLDEAMIRWLEEYLRS 160

Query: 341 IGSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371
               + M   D+   D +    + + IS+ +
Sbjct: 161 YKGTVIMVTHDRYFLDRVTN--RILEISHGK 189


>gi|311992855|ref|YP_004009722.1| gp46 recombination endonuclease subunit [Acinetobacter phage
          Acj61]
 gi|295815144|gb|ADG36070.1| gp46 recombination endonuclease subunit [Acinetobacter phage
          Acj61]
          Length = 559

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 5  IKIKFLNISEFRNY-----ASLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          +K   LN   ++N        +R+  DA H T+  G NG GK+ +LEAI+F   G+ FR 
Sbjct: 1  MKTFKLNSVAYKNIMSVGDTEIRIALDAHHKTLITGKNGGGKSTMLEAITFALFGKPFRD 60

Query: 59 ASYADVTR 66
               +  
Sbjct: 61 IKKGQLVN 68


>gi|300724366|ref|YP_003713684.1| hypothetical protein XNC1_3543 [Xenorhabdus nematophila ATCC
          19061]
 gi|297630901|emb|CBJ91578.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC
          19061]
          Length = 363

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          +TN   +  + I+ +++ A   L       + +G NG GK+N +     ++     R
Sbjct: 4  VTNNDHLSRIKITGYKSIAECDLPMGC-LNVLIGANGAGKSNFISFFRLIATVLDHR 59


>gi|242242687|ref|ZP_04797132.1| nitric-oxide reductase [Staphylococcus epidermidis W23144]
 gi|242233823|gb|EES36135.1| nitric-oxide reductase [Staphylococcus epidermidis W23144]
          Length = 266

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 77/246 (31%), Gaps = 13/246 (5%)

Query: 18  YASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTF 76
           +   + +F     I + G  G GKT + E +S +      +     D+       F +  
Sbjct: 17  FEDAKALFQLNKNILLKGPTGSGKTKLAETLSHVMNLPMHQVNCSVDLDTESLLGFKTIQ 76

Query: 77  ARVEGMEGL--ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL--RISWLVPSMDRI 132
              EG + +   D  +    ++   +   +IN      +  LN  L  R     P    +
Sbjct: 77  TNEEGHQEIVFIDGPVIKAMKEGHILYIDEINMAKPETLPILNGVLDYRRQLTNPYTGEV 136

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS-SIEAQMA 191
                         ++ AI+  +   +      ++ R  ++   Y D       I+ Q  
Sbjct: 137 IKAAPGF------NVIAAINEGYVGTLP-MNEALKNRFIVIEVDYIDGDILKTVIKEQSK 189

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
               ++    ++    L ++  +    E    I+  +             A++     KL
Sbjct: 190 LQDEQLIQHIIKFNEDLRTMTKQGQISEEAASIRALIDLSDLATVMPIERAVQRTIIDKL 249

Query: 252 FDGRKM 257
            D R+ 
Sbjct: 250 EDEREQ 255


>gi|160942826|ref|ZP_02090066.1| hypothetical protein FAEPRAM212_00303 [Faecalibacterium
          prausnitzii M21/2]
 gi|313113954|ref|ZP_07799510.1| ABC transporter, ATP-binding family protein [Faecalibacterium cf.
          prausnitzii KLE1255]
 gi|158445878|gb|EDP22881.1| hypothetical protein FAEPRAM212_00303 [Faecalibacterium
          prausnitzii M21/2]
 gi|295101990|emb|CBK99535.1| Predicted ATPase [Faecalibacterium prausnitzii L2-6]
 gi|295103317|emb|CBL00861.1| Predicted ATPase [Faecalibacterium prausnitzii SL3/3]
 gi|310623717|gb|EFQ07116.1| ABC transporter, ATP-binding family protein [Faecalibacterium cf.
          prausnitzii KLE1255]
          Length = 240

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISF 49
             F    T FVG+NG GK+ +LEAI+ 
Sbjct: 33 TFTFHKPITFFVGENGSGKSTLLEAIAV 60


>gi|154246244|ref|YP_001417202.1| SMC domain-containing protein [Xanthobacter autotrophicus Py2]
 gi|154160329|gb|ABS67545.1| SMC domain protein [Xanthobacter autotrophicus Py2]
          Length = 880

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          ++I+ L I  FR + S  +   F     +    N  GK+ +L+A+         R ++ +
Sbjct: 1  MRIRRLTIENFRKFRSPVVLEGFADGLNLVCEPNETGKSTVLDALRAALF---ERHSAKS 57

Query: 63 DVTRIGSPSFFSTFARVEGMEGLADISIKLETR 95
          D  R   P        V+    +     +L  R
Sbjct: 58 DRIRSFRPQGDEVAPTVDLAFDVGGGEWRLSKR 90


>gi|118578554|ref|YP_899804.1| hypothetical protein Ppro_0107 [Pelobacter propionicus DSM 2379]
 gi|118501264|gb|ABK97746.1| hypothetical protein Ppro_0107 [Pelobacter propionicus DSM 2379]
          Length = 869

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 274 IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR-- 331
            +    K       S GEQKV+ +  FLA   L   T G    ++ D+    LD++++  
Sbjct: 617 QLFLKGKNQPSQILSEGEQKVISLADFLAEINLSEITRG----IIFDDPVTSLDDERKCL 672

Query: 332 --NALFRIVTDIGSQIFM 347
             N +          +F 
Sbjct: 673 IGNRIVNETAKKQIVVFT 690


>gi|328555697|gb|AEB26189.1| topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase
           [Bacillus amyloliquefaciens TA208]
          Length = 701

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 70/205 (34%), Gaps = 20/205 (9%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYAD 63
           + +K + I  +R + +         T+  G N  GKT+++  I S +  G+     S   
Sbjct: 1   MLLKGVTIQNYRKFKNEAFSMADDVTLLAGANNSGKTSMINLIGSIMQNGKTPFFISDIP 60

Query: 64  --VTRIGSPSFFSTFA--RVEGMEGLADISIKLETRDDRS----VRCLQINDVVIRVVDE 115
             +++      + TF     EG + L+ +   +              L I    IR   +
Sbjct: 61  VRLSKQWVDEVYETFILCFKEGDDQLSTVERIINKLFSTELFNLECDLIIPATSIRFRID 120

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--------FAIDPRHRRRMIDFERLMR 167
            ++   I       D I       +  + +            A++  +++    ++++  
Sbjct: 121 YSEEDDIRKFA---DFIMDLNPDNKSFYFEYSFQPTYVSFGQALEENYKKLYARYKKIHS 177

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAE 192
            ++  L    F     S  EA + E
Sbjct: 178 SKDPTLKIRQFKEVILSIYEASIIE 202


>gi|296453821|ref|YP_003660964.1| DNA repair protein RecN [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296183252|gb|ADH00134.1| DNA repair protein RecN [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 595

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 73/259 (28%), Gaps = 52/259 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYADV 64
           ++ L+I          +   A  T   G+ G GK+ +L AI  +S G     R ++ AD 
Sbjct: 2   LEELDIRNLGPIREATIAPAAGMTAITGETGAGKSMLLSAIRLVSGGAAESSRVSAGADE 61

Query: 65  TRIGSPSFFSTFARVEGMEGLA-----------------------------DISIKLETR 95
               +    +  A      G                               D  + L   
Sbjct: 62  AWAQAIFALADDAVASEHSGDTNDAGDDADSGLTGAAAAVAKAHDAGVDPEDGELFLSRT 121

Query: 96  DDRSVRCLQINDVVIRVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR 154
              S R   +          L      +  +    D++    +  +R FLDR+       
Sbjct: 122 VRASGRSRAVLGGKSVPRSVLGAIAGELVIIHGQTDQLKIAAAARQREFLDRVAGD---- 177

Query: 155 HRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME 214
               +  + +                   ++++ ++  L  + + AR +  + L   I  
Sbjct: 178 -EAELAAYRKAW--------------DALAAMDERLERLRSQESSARQQA-DYLRESIDR 221

Query: 215 YVQKENFPHIKLSLTGFLD 233
             + +  P     L    +
Sbjct: 222 INRTDPQPGEDEELKARRE 240


>gi|224068135|ref|XP_002188800.1| PREDICTED: RAD50 homolog (S. cerevisiae) [Taeniopygia guttata]
          Length = 1312

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F    TI VG NG GKT I+E + ++S G
Sbjct: 3  RIEKMSILGVRSFGVEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTG 55


>gi|197301778|ref|ZP_03166848.1| hypothetical protein RUMLAC_00504 [Ruminococcus lactaris ATCC
           29176]
 gi|197299218|gb|EDY33748.1| hypothetical protein RUMLAC_00504 [Ruminococcus lactaris ATCC
           29176]
          Length = 561

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 21/123 (17%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L + +        + F     I  G+ G GK+ +L ++     G+      
Sbjct: 4   MLQNLYVKNLALID-----ETEVEFGEGLNILTGETGAGKSLLLGSVHLALGGK-----Y 53

Query: 61  YADVTRIGSPSFFS-TFARVEGMEGLADIS----------IKLETRDDRSVRCLQINDVV 109
             D+ R G+ S       ++E  +    +           + L  R        +IN   
Sbjct: 54  SPDMLRNGTKSGLVELTFKIEDEQIEKHLEEMNLYPEDGFLTLSRRLMEGRSISKINGET 113

Query: 110 IRV 112
           +  
Sbjct: 114 VNT 116


>gi|169824534|ref|YP_001692145.1| DNA repair and genetic recombination protein [Finegoldia magna
          ATCC 29328]
 gi|167831339|dbj|BAG08255.1| DNA repair and genetic recombination protein [Finegoldia magna
          ATCC 29328]
          Length = 565

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +  L I  F     + + F     I  G+ G GK+ ++EA   L
Sbjct: 2  LNSLYIENFAIIDKINVDFTEGLNIITGETGSGKSILIEAFELL 45


>gi|126651436|ref|ZP_01723640.1| hypothetical protein BB14905_07129 [Bacillus sp. B14905]
 gi|126591689|gb|EAZ85785.1| hypothetical protein BB14905_07129 [Bacillus sp. B14905]
          Length = 445

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 65/414 (15%), Positives = 120/414 (28%), Gaps = 88/414 (21%)

Query: 12  ISEFRNYASLRLVFD--------AQHTIFVGDNGVGKTNILEAISFLSPGRG------FR 57
           +   RN     +           A      G NG GKT I++A   L             
Sbjct: 11  LKNLRNVRHGEVTLAVSFESFLQANVVGLYGQNGSGKTTIVDAFGLLKTLISGWLAEVKL 70

Query: 58  RASYADVTRIGSPSF--------------FSTFARVEGMEGLADISIKLET---RDDRSV 100
                 +   G  +               F     VE  E    +   LE    R++   
Sbjct: 71  PPQEKRLILAGEDTASLDFEFLVENQFGTFFVHYYVELQEDQHRLYTTLERLTYRENGKG 130

Query: 101 RCLQI------NDVVIR--VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID 152
           +  ++        + IR   + ++++  RI  LV            E R F    +F  D
Sbjct: 131 KRSKVLMAMTEKGIQIRNSNLPDMSEQARIQLLVIQQL-----ARKEYRSF----LFHKD 181

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIARVEMINALSSL 211
               + ++  ERL     +L+     D +     +  Q       +   R+        +
Sbjct: 182 ---LKPLLQ-ERLTEQEIQLIKNIAVDFNRDLHVVNNQ---NIAPLFEERI--------M 226

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
                 ++    I   L G      D+  + C + E+  + L        +   T+    
Sbjct: 227 PFSIHLEKTRGQIPYDLKGPALLPEDEFYALCEVIEQSNRVLAA-----IIPGLTIKINI 281

Query: 270 RSDLIVDYCDKAITIAHGST-GEQKVVLV-----GIFLAHAR--LISNTTGFAPILLLDE 321
            +   +D   + I     S  GEQ++ L       + +      LI+        +++D 
Sbjct: 282 ITKQTMDDGGQGIRFEFLSQRGEQELPLRTESEGILKIISILSVLIAVYNNPNACVVID- 340

Query: 322 ISAHLDEDKRNALFRIV-----TDIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
               LD      L   +      D   Q+  T  +  V + L     +   +N 
Sbjct: 341 ---ELDSGVFEYLLGELLTVIDEDGKGQLVFTSHNLRVLEVLAIKNLWFTTTNE 391


>gi|119470692|ref|ZP_01613360.1| exonuclease sbcCD subunit C [Alteromonadales bacterium TW-7]
 gi|119446162|gb|EAW27440.1| exonuclease sbcCD subunit C [Alteromonadales bacterium TW-7]
          Length = 1216

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 7/90 (7%)

Query: 5  IKIKFLNISEFRNYASLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          +KI  + I    +     + F      DA      GD G GK+  L+AI      +  R 
Sbjct: 1  MKITAVRIHNLASIVDAEIDFTQAPLKDAGLFAITGDTGAGKSTFLDAICLALYTKTARL 60

Query: 59 ASYA-DVTRIGSPSFFSTFARVEGMEGLAD 87
               ++      S     AR     G  +
Sbjct: 61 KGDKGNLIDFNGDSIKLNDARNLLRRGKWE 90


>gi|78214193|ref|YP_382972.1| DNA repair protein RecN [Synechococcus sp. CC9605]
 gi|78198652|gb|ABB36417.1| DNA repair protein RecN [Synechococcus sp. CC9605]
          Length = 560

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 56/175 (32%), Gaps = 16/175 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-------RGFRRA 59
           +  L +       SL L F +  T+  G+ G GK+ +L+A+  +  G       R  R  
Sbjct: 2   LTGLQLQNIALIESLELDFSSGFTVLTGETGAGKSILLDALDAVLGGAQGSSGIRLLRAG 61

Query: 60  SYADVTR-----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           S             +   +   A  +  E L           DR     ++N   +    
Sbjct: 62  SDRARIEAAFQLNPALEQWLIAAEFDPEEELLISRAWKRQEGDRYSSRCRLNGSTVNRQQ 121

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM----VFAIDPRHRRRMIDFERL 165
            L     +  L           + ++R +LDR+    +  +  R      ++ + 
Sbjct: 122 LLELRPLLIDLTVQGQTQLLSRAGQQRLWLDRLGGSALAEVKARVADAWTEWRQA 176


>gi|23012970|ref|ZP_00052937.1| COG0497: ATPase involved in DNA repair [Magnetospirillum
           magnetotacticum MS-1]
          Length = 553

 Score = 42.6 bits (99), Expect = 0.099,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 81/263 (30%), Gaps = 38/263 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I +      L L FD+  ++F G+ G GK+ +L+++      R     + + + R
Sbjct: 2   LTALSIRDVVLIERLDLSFDSGLSVFTGETGAGKSILLDSLGLALGAR-----AESGLVR 56

Query: 67  IGS------------PSFFSTFARVEGMEGLADISIKLETRDDRSVR-CLQINDVVIRV- 112
            G+             +  +     E      +  + L        R    +ND  + V 
Sbjct: 57  HGASQASVTAEFDPPAAHPARALLAEQDVEAREGPLLLRRVLTADGRSKAYVNDQPVSVG 116

Query: 113 -VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR-----RRMIDFERLM 166
            + ++   L           +    S      LD      + R           D  +  
Sbjct: 117 LLRKVGDELVEIHGQFESHGLL--DSSTHLGVLDSFAGQAEARSALSAAWTLWRDAAKAR 174

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELG------VKINIARVEMINALSSLIMEYVQKEN 220
                 L +   +      +   +A L        ++  +R  M++       + ++  N
Sbjct: 175 SQAEADLAKAKAEEEHLRQMHEDLAALSPKPGEEAELAASRAVMMHG-----EKLLEAMN 229

Query: 221 FPHIKLSLTGFLDGKFDQSFCAL 243
                L+  G ++     +  AL
Sbjct: 230 AAQEALTHKGEVEASLRSASRAL 252


>gi|332290358|ref|YP_004421210.1| recombination and repair protein [Gallibacterium anatis UMN179]
 gi|330433254|gb|AEC18313.1| recombination and repair protein [Gallibacterium anatis UMN179]
          Length = 558

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 62/208 (29%), Gaps = 21/208 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRR---- 58
           +  L I+ F     L L F    ++  G+ G GK+  L+A+      R      R     
Sbjct: 2   LTQLRINNFAIVNRLTLDFAQGMSVITGETGAGKSIALDALEVCLGQRAESGMLRSGESR 61

Query: 59  ---ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND-VVIRVVD 114
              ++   +        +     ++  E   +  ++     D   +    N  V    + 
Sbjct: 62  ADVSALFSLQNNSEAQQWLQAHELDDEENPEECVLRRTISADGRSKGFINNQPVPAAQLR 121

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDR------MVFAIDPRHRRRMIDFERLMRG 168
           EL   L          ++       + + LD       ++  ++ +        ++L   
Sbjct: 122 ELGALLVQISGQHCSQQLLK--PEYQLQLLDTFCHNQSLLQQLNHQFHLWKQQQQKLADF 179

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           R +   E             ++ E  +K
Sbjct: 180 RQQ-CAENEARKQLLHYQIEELNEFALK 206


>gi|309357322|emb|CAP35561.2| CBR-SMC-4 protein [Caenorhabditis briggsae AF16]
          Length = 1572

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 3   NRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RR 58
           +R+ I  + ++ F++Y   +    F    T  +G NG GK+N+++++ F+   R    R 
Sbjct: 94  DRLMIMNVEVNNFKSYYGKASIGPFHKSFTSIIGPNGSGKSNLIDSLLFVFGFRASKIRS 153

Query: 59  ASYADVTR 66
           A  A++  
Sbjct: 154 AKVANLIH 161


>gi|262195069|ref|YP_003266278.1| hypothetical protein Hoch_1837 [Haliangium ochraceum DSM 14365]
 gi|262078416|gb|ACY14385.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 456

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 7  IKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNIL 44
          ++ + + E RN           +  + +G NG GKT +L
Sbjct: 4  LRRVTVHELRNVKPGSSFSLSPKINVLLGRNGSGKTTLL 42


>gi|167523338|ref|XP_001746006.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775807|gb|EDQ89430.1| predicted protein [Monosiga brevicollis MX1]
          Length = 657

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 17/201 (8%)

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIME-YVQKE 219
            +      R  L+           +IE  +  L  K + A       +     + + +  
Sbjct: 3   QYVSFSEQREALMRRKTDQDDGDKAIERLLMVLDNKKDEAIERTFKMVCKFFSDVFKELV 62

Query: 220 NFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
              H +L +     G   Q     +E  A     G++         IG     + V++  
Sbjct: 63  PHGHGELVMQRSKGGDASQDGDESQETDASTRKRGKRPRINE---FIGVA---IRVNFTG 116

Query: 280 KAITIAHG---STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
           +          S G++ +V + +  +           A   L DEI   LD   R A+ R
Sbjct: 117 RGEDTHFLQSLSGGQKSLVALALIFS-----IQKCDPAAFYLFDEIDQALDPAHRAAVAR 171

Query: 337 IV--TDIGSQIFMTGTDKSVF 355
           ++      +Q   T     + 
Sbjct: 172 MIYKASREAQYITTTFRPELL 192


>gi|169858554|ref|XP_001835922.1| RAD50 [Coprinopsis cinerea okayama7#130]
 gi|116503092|gb|EAU85987.1| RAD50 [Coprinopsis cinerea okayama7#130]
 gi|157428273|gb|ABV56236.1| RAD50 [Coprinopsis cinerea]
          Length = 1309

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYASLRL---VFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  L I   R++   ++    F +  T+ VG NG GKT I+E + + + G
Sbjct: 4  LNKLAIRGIRSFDDKQISVIEFFSPVTVIVGHNGSGKTTIIECLKYATTG 53


>gi|46487366|gb|AAS99080.1| Tgh123 [Campylobacter jejuni]
          Length = 76

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          KIK +N   F NY S  L F+ +  I  G NG GK++++
Sbjct: 4  KIKQVNYKSFNNYNSSGLEFN-RINILYGRNGQGKSSLV 41


>gi|46201752|ref|ZP_00054423.2| COG3910: Predicted ATPase [Magnetospirillum magnetotacticum MS-1]
          Length = 208

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS------FLSPGRGFRRA 59
           + FL   +F       L F +  TI VG+NG GK+ ++E I+       L   R  R A
Sbjct: 30 HLPFLKGDDF------VLDFGSAITILVGENGSGKSTLIEGIASCAGFPMLGGSRDHRPA 83

Query: 60 SYA 62
            A
Sbjct: 84 EDA 86


>gi|86151311|ref|ZP_01069526.1| RloE, putative [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85841658|gb|EAQ58905.1| RloE, putative [Campylobacter jejuni subsp. jejuni 260.94]
          Length = 714

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          KIK +N   F NY S  L F+ +  I  G NG GK++++
Sbjct: 4  KIKQVNYKSFNNYNSSGLEFN-RINILYGRNGQGKSSLV 41


>gi|307566081|ref|ZP_07628539.1| DNA sulfur modification protein DndD [Prevotella amnii CRIS
          21A-A]
 gi|307345269|gb|EFN90648.1| DNA sulfur modification protein DndD [Prevotella amnii CRIS
          21A-A]
          Length = 695

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEFRNYA---SLRLVFDAQHTIFV--GDNGVGKTNILEAISFLSPGR 54
          + IK + +  FR Y     + L  + +  I +  G+NG GKT  L ++ +   G+
Sbjct: 1  MIIKSIELYNFRIYRGVNKIDLTPNGERNIIIVSGNNGYGKTTFLMSLVWCLYGK 55


>gi|295101031|emb|CBK98576.1| Predicted ATPase [Faecalibacterium prausnitzii L2-6]
          Length = 240

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISF 49
             F    T FVG+NG GK+ +LEAI+ 
Sbjct: 33 TFTFHKPITFFVGENGSGKSTLLEAIAV 60


>gi|290476360|ref|YP_003469264.1| hypothetical protein XBJ1_3382 [Xenorhabdus bovienii SS-2004]
 gi|289175697|emb|CBJ82500.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
          Length = 363

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          +TN   +  + I+ +++ A   L       + +G NG GK+N +     ++     R
Sbjct: 4  VTNNDHLSRIKITGYKSIAECDLPMGC-LNVLIGANGAGKSNFISFFRLIATVLDHR 59


>gi|264678825|ref|YP_003278732.1| chromosome segregation protein SMC [Comamonas testosteroni CNB-2]
 gi|299529803|ref|ZP_07043236.1| chromosome segregation protein SMC [Comamonas testosteroni S44]
 gi|262209338|gb|ACY33436.1| chromosome segregation protein SMC [Comamonas testosteroni CNB-2]
 gi|298722217|gb|EFI63141.1| chromosome segregation protein SMC [Comamonas testosteroni S44]
          Length = 1175

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++A     +   Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1  MRLNSIKLSGFKSFAEPTNFILPGQMVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES 60

Query: 61 YADVTRIG 68
            DV   G
Sbjct: 61 MQDVIFNG 68


>gi|261496947|ref|ZP_05993314.1| recombination protein RecN [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307383|gb|EEY08719.1| recombination protein RecN [Mannheimia haemolytica serotype A2 str.
           OVINE]
          Length = 560

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 22/131 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F     L L  +   ++  G+ G GK+  ++A+      R       + + R
Sbjct: 2   LTQLTINNFAIVRHLILELNEGMSVITGETGAGKSIAIDALGLCLGYRS-----ESGMIR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQINDV-V 109
            GS     +                   +   +   +  ++     D   +    N    
Sbjct: 57  NGSDKADISATFTMQPHSPAYLWLQEHELLDEDNPQECILRRMINIDGRSKAFVNNRSLP 116

Query: 110 IRVVDELNKHL 120
           +  + EL ++L
Sbjct: 117 VSQLRELGQYL 127


>gi|268315943|ref|YP_003289662.1| DNA repair protein RecN [Rhodothermus marinus DSM 4252]
 gi|262333477|gb|ACY47274.1| DNA repair protein RecN [Rhodothermus marinus DSM 4252]
          Length = 578

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L I ++     L + F +   I  G+ G GK+ ++ A+  +   R     +  ++ R
Sbjct: 2  LRTLYIRDYALIEELEVEFGSGLNILTGETGAGKSILIGALKMILGER-----ADTEMIR 56

Query: 67 IGSPSFFSTFARVEGMEGLADI 88
           G+       A VEG+   AD 
Sbjct: 57 SGA-----RKAVVEGVFDEADT 73


>gi|225164247|ref|ZP_03726520.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
 gi|224801152|gb|EEG19475.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
          Length = 504

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 25/72 (34%)

Query: 8   KFLNISEFRNYASLRLVFDA--------QHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
           + ++++ F       L F             I +G NG GK+N++EA   L       RA
Sbjct: 87  QQIHLTNF-------LSFGPDAPPIPLRSLNIIIGPNGSGKSNLIEAFDLL-------RA 132

Query: 60  SYADV---TRIG 68
           S  D+    R G
Sbjct: 133 SSNDLTVPIREG 144


>gi|56963170|ref|YP_174898.1| hypothetical protein ABC1399 [Bacillus clausii KSM-K16]
 gi|56909410|dbj|BAD63937.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 670

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 67/420 (15%), Positives = 134/420 (31%), Gaps = 101/420 (24%)

Query: 5   IKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF-RRASY 61
           + I  L++  FR++      +  + + + FVG+N  GKT ++  +  L       R    
Sbjct: 1   MIISKLHLKNFRSFGDKGTTVKLN-KLSGFVGENSAGKTALIHGLVKLFGVTSHERTLEK 59

Query: 62  ADVTRIGSPSFFSTFARVE-GMEGLADISIKLETRDDRSVRCLQ---INDVVIRVVDELN 117
           +D   I   +   T   ++  +E   D    LET  +   R      IN +V+R   E  
Sbjct: 60  SDF-HIPKQAKVETIKELQLSIEARIDFPELLETDQENLSRTSIPPFINQLVVRAATE-A 117

Query: 118 KHLRISWL-------VPS-------------------MDRIFSGLSMERRRFLDRMVFAI 151
            +LR+  +        P                     + +      +R         +I
Sbjct: 118 PYLRVRLIAKWTTDNTPEGEIEQKLYFVTVAEDIDETEEDLVPVTPHQR--------SSI 169

Query: 152 DPRHRRRMIDFERLMRGRN-RLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSS 210
              +   + +    +R  +  +L     + SW   I             AR+E +N L  
Sbjct: 170 QVLYVPAVREPSSQLRNASGTILWRILNNISWPDDINDS--------IKARMEPVNELFD 221

Query: 211 LIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH- 269
            I      E   HI+                 + EE+ K   D R  D+  + +      
Sbjct: 222 SI------EGVSHIR---------------SVIGEEWKKYHKDARYQDAKLQFSSSTLSA 260

Query: 270 -----------RSDL----IVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
                        DL    +    D   ++ + S      ++  +  A  ++   +    
Sbjct: 261 ILKKIEVSFSPTHDLGEYSVEKLGDGLRSLFYLS------LVSSLLEAEIKITGKSNASL 314

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDI----GSQIFMTGTDKSVFDSLN-ETAKFMRISN 369
            +L ++E   H+       +   + DI     +Q+ +T    S+   ++ +    +RI  
Sbjct: 315 TVLAVEEPENHISPHLLGRVMENLKDISGKYNAQVVLTSHSSSIIKRIDPDNLTHLRIDQ 374


>gi|328713323|ref|XP_001948559.2| PREDICTED: DNA repair protein RAD50-like [Acyrthosiphon pisum]
          Length = 1303

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 13/100 (13%)

Query: 7   IKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++ ++I   R+Y       L F    T+ +G NG GKT I+E + +++          +D
Sbjct: 4   LESISIQGIRSYHPDEKQTLKFYKPLTLILGQNGCGKTTIIECLKYITC---------SD 54

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL 103
           + R  +   F    ++         ++KL   D +  R +
Sbjct: 55  LPRNANKGGFVWDPKLS-DHHTVKGNVKLSFHDTKDTRVV 93



 Score = 36.8 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 72/198 (36%), Gaps = 28/198 (14%)

Query: 167  RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            + R  L  E          ++  +  +  ++    +   NA +  + E VQ E    ++ 
Sbjct: 1055 KQRQALAEEKNKSLGRKQELDNIIRHITEELTA--IHFKNAENIYLHEKVQLEILNRVEK 1112

Query: 227  SLTGF---LDGKFD-------QSFCALKEEYAKKLFDGRKMDSMSRRTLIG---PHRSDL 273
             LT +   L+   +       QS   + ++  + ++ G  +D +  +T           +
Sbjct: 1113 DLTKYNKALEWAMNRFHKERMQSINTIIKKLWRDIYTGNDIDYIQIKTSSDDKPIQTDTI 1172

Query: 274  IVDYCDKAIT----------IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEIS 323
                 +  +               S G++ +  + + +A A   S   G   IL LDE +
Sbjct: 1173 KKRVFNYRVVQIKNEVELDMRGRCSAGQKVLACLIVRMALAETFSKNCG---ILALDEPT 1229

Query: 324  AHLDEDKRNALFRIVTDI 341
             +LDE    +L   +++I
Sbjct: 1230 TNLDESNIQSLAESLSEI 1247


>gi|282928508|ref|ZP_06336108.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282591930|gb|EFB96965.1| conserved hypothetical protein [Staphylococcus aureus A9765]
          Length = 647

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          +KI  L IS F     +   FD +     G+N  GKT    A+ +L   +G   ++
Sbjct: 1  MKINKLTISNFAGIKEVTFNFDGKDAKIYGNNATGKTITATALQWLLFDKGLDGST 56


>gi|170574958|ref|XP_001893036.1| SMC family, C-terminal domain containing protein [Brugia malayi]
 gi|158601141|gb|EDP38130.1| SMC family, C-terminal domain containing protein [Brugia malayi]
          Length = 1704

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 4   RIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
           R+ I  +++  F++Y    +   F    +  +G NG GK+N+++++ F+   R
Sbjct: 77  RLMITSIDVENFKSYYGKHVLGPFHQNFSAIIGPNGSGKSNVIDSLLFVFGYR 129


>gi|121594442|ref|YP_986338.1| chromosome segregation protein SMC [Acidovorax sp. JS42]
 gi|120606522|gb|ABM42262.1| chromosome segregation protein SMC [Acidovorax sp. JS42]
          Length = 1174

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 95/287 (33%), Gaps = 33/287 (11%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +++  + ++ F+++A     +   Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1   MRLNSIKLAGFKSFAEPTNFMLPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES 60

Query: 61  YADVTRIGSPS-----------FFSTFARVEGMEGLADISIKLETRDDR-SVRCLQINDV 108
             DV   G+ S            F       G +      I ++    R       IN+ 
Sbjct: 61  MQDVIFNGTTSRKPASRSSVELTFDNSDHRAGGQWNQFTEIAVKRVLTRDGTSSYFINNQ 120

Query: 109 VIRVVDE--------LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D         L           ++ RI      E R FL+        +++ R  
Sbjct: 121 PVRRRDVQDVFLGTGLGPRAYAIIGQGTISRIIESRPEELRLFLEEAAG--VSKYKERRR 178

Query: 161 DF-ERLMRGRNRLLTEGYFDSSW---CSSIEAQMAELGVKINIARVEM-INALSSLIMEY 215
           +   RL   R  L                +E Q AE+  + N  + ++ +       ++ 
Sbjct: 179 ETENRLSDTRENLTRVEDILRELNANLDKLEKQ-AEVAARYNALQQDVTLKQHQLWFLKR 237

Query: 216 VQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            + E+    ++   G       +S  A        L   R+    + 
Sbjct: 238 AEAES-EQARVRTEGLAAVNDLESRMADLRHVEADLETIRQAHYEAG 283


>gi|311104686|ref|YP_003977539.1| chromosome segregation protein SMC [Achromobacter xylosoxidans
          A8]
 gi|310759375|gb|ADP14824.1| chromosome segregation protein SMC [Achromobacter xylosoxidans
          A8]
          Length = 1177

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
          +++  L ++ F+++    ++    Q    VG NG GK+NI++A+   L   +    R  S
Sbjct: 1  MRLTQLKLAGFKSFVDPTVIPVPSQLVGVVGPNGCGKSNIIDAVRWVLGEAKASELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|307269738|ref|ZP_07551068.1| hypothetical protein HMPREF9498_01865 [Enterococcus faecalis
          TX4248]
 gi|306513848|gb|EFM82450.1| hypothetical protein HMPREF9498_01865 [Enterococcus faecalis
          TX4248]
          Length = 448

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K ++I     Y ++ +  D +  +FVG+NG+GKT IL  I FL
Sbjct: 12 LKQIDIEGLHGYYNVSIPLDKKANLFVGENGLGKTTILNIIYFL 55


>gi|296125386|ref|YP_003632638.1| ABC transporter [Brachyspira murdochii DSM 12563]
 gi|296017202|gb|ADG70439.1| ABC transporter related protein [Brachyspira murdochii DSM 12563]
          Length = 606

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           +A   L++  T  A +L+LDE + HLD +   AL   + D G  IF T  D++    L +
Sbjct: 408 MARLSLLAAITQCADVLILDEPTNHLDFETVEALASSLRDYGGTIFFTSHDRTFASMLAD 467

Query: 361 TAKFMRISN 369
           T   + + +
Sbjct: 468 T--IIEVKD 474


>gi|159572611|emb|CAP19185.1| RAD50 homolog (S. cerevisiae) [Mus musculus]
          Length = 657

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIISFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|116074272|ref|ZP_01471534.1| DNA repair protein RecN [Synechococcus sp. RS9916]
 gi|116069577|gb|EAU75329.1| DNA repair protein RecN [Synechococcus sp. RS9916]
          Length = 565

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 94/264 (35%), Gaps = 29/264 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   +++  + +       SL L F+   T+  G+ G GK+ +L+A+  +  G      +
Sbjct: 1   MLAGLRLHNIAL-----IESLELDFEPGLTVLTGETGAGKSLLLDALDAVLGGMQ--GTA 53

Query: 61  YADVTRIGSPSFFSTF-----------------ARVEGMEGLADISIKLETRDDRSVRCL 103
            A + R G                         A  +G E    +  +   +DDR     
Sbjct: 54  AARLVRNGQARAGIEARFDPSAAVKTWLEGQQLALEDGEEEELVVCREWRRQDDRLSSRF 113

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE 163
           +IN V +     L     +  L             ++RR+LDR+  A       ++    
Sbjct: 114 RINGVAVNRQQVLALRPLLIDLTVQGQTQQLARPGQQRRWLDRLGAAELEACLAQVRRHW 173

Query: 164 RLMRGRNRLLTEGYFDSS-WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
            L R     L +    +  +   +E + A L  ++  A +E  + L  L  E  +  +  
Sbjct: 174 LLWREAFGALEQARMQAERFQEQLEERQALL-EELEAAHLEDPDELRQLTAEQDRLVHGV 232

Query: 223 HIKL---SLTGFLDGKFDQSFCAL 243
           H++     L G L    DQ+  A+
Sbjct: 233 HLQEGLGELIGRLQDGADQAPSAI 256


>gi|114766425|ref|ZP_01445394.1| hypothetical protein 1100011001358_R2601_25731 [Pelagibaca
           bermudensis HTCC2601]
 gi|114541366|gb|EAU44414.1| hypothetical protein R2601_25731 [Roseovarius sp. HTCC2601]
          Length = 865

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 72/197 (36%), Gaps = 18/197 (9%)

Query: 180 SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQS 239
                ++  ++A L  +I  A  + +    +   E +        ++S       + +Q+
Sbjct: 663 RQEIETLRPELARLEERIARAAGDAVEERLAETEEMLAGAEADLARISHEVAALTRLEQA 722

Query: 240 FCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC------------DKAITIAHG 287
             A + E  ++ F+    +    R L+     D  + +              +A  +   
Sbjct: 723 LTAARTEARERYFEPVAKEL---RPLLNLLWQDAELTWAEDSLLPDGLVRHGQAEPLDIL 779

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV--TDIGSQI 345
           S G Q+ V + + LA AR++    G A  ++LD+     D+D+   +F  +       QI
Sbjct: 780 SGGTQEQVALLVRLAFARMLQAA-GRAAPVILDDALVFTDDDRIERMFNALHRQAADLQI 838

Query: 346 FMTGTDKSVFDSLNETA 362
            +    +  F  L   +
Sbjct: 839 LVLTCRQRAFRDLGGRS 855


>gi|268574232|ref|XP_002642093.1| C. briggsae CBR-SMC-4 protein [Caenorhabditis briggsae]
          Length = 1551

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 3   NRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RR 58
           +R+ I  + ++ F++Y   +    F    T  +G NG GK+N+++++ F+   R    R 
Sbjct: 94  DRLMIMNVEVNNFKSYYGKASIGPFHKSFTSIIGPNGSGKSNLIDSLLFVFGFRASKIRS 153

Query: 59  ASYADVTR 66
           A  A++  
Sbjct: 154 AKVANLIH 161


>gi|325292378|ref|YP_004278242.1| hypothetical protein AGROH133_04962 [Agrobacterium sp. H13-3]
 gi|325060231|gb|ADY63922.1| hypothetical protein AGROH133_04962 [Agrobacterium sp. H13-3]
          Length = 366

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +I  L ++ +++     L    +  + +G NG GK+N +
Sbjct: 10 QISRLVLNGYKSIEHCDLEMG-RLNVLIGANGAGKSNFI 47


>gi|320195808|gb|EFW70433.1| Purine NTPase [Escherichia coli WV_060327]
          Length = 797

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 6  KIKFLNISEFRNYAS-LRLVF-DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
          K+  L ++ F+++     +        I  G NG GKT + +AI     G+  R ++ 
Sbjct: 3  KLGKLRVNNFKSFKDDFTINLGSTDLFILDGPNGFGKTTLFDAIELCFTGKIGRVSNT 60


>gi|302380511|ref|ZP_07268976.1| DNA repair protein RecN [Finegoldia magna ACS-171-V-Col3]
 gi|302311454|gb|EFK93470.1| DNA repair protein RecN [Finegoldia magna ACS-171-V-Col3]
          Length = 565

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +  L I  F     + + F     I  G+ G GK+ ++EA   L
Sbjct: 2  LNSLYIENFAIIDKINVDFTEGLNIITGETGSGKSILIEAFELL 45


>gi|293363824|ref|ZP_06610564.1| ABC transporter, ATP-binding protein [Mycoplasma alligatoris
           A21JP2]
 gi|292552629|gb|EFF41399.1| ABC transporter, ATP-binding protein [Mycoplasma alligatoris
           A21JP2]
          Length = 243

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 60/164 (36%), Gaps = 22/164 (13%)

Query: 206 NALSSLIMEYVQKENFPHIKLSLTGFLDGK-FDQSFCALKEEYAKKLFDGRKMDSMSRRT 264
                 I+    + ++   K  L    +   F  +F +    Y+  L  G+K D      
Sbjct: 57  EKWEGKILINNIENHYAQAKYKLGYMPENPIFPSNFTSYDYLYSFALLSGQKKDQAQENI 116

Query: 265 LIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
                  +L ++           S G++K +L+           +      +L++DE +A
Sbjct: 117 KT--LSDNLKIEELLYKKPHNFSS-GQKKKILLA---------QSLINNPDLLVMDEPAA 164

Query: 325 HLDEDKRNAL---FRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
           +LD + R  L      + D G  IF++         L+E ++F+
Sbjct: 165 NLDPNAREELFSVLNSLKDKGKTIFIST------HELHEISRFV 202


>gi|261493999|ref|ZP_05990505.1| recombination protein RecN [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261310345|gb|EEY11542.1| recombination protein RecN [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 560

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 22/131 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F     L L  +   ++  G+ G GK+  ++A+      R       + + R
Sbjct: 2   LTQLTINNFAIVRHLILELNEGMSVITGETGAGKSIAIDALGLCLGYRS-----ESGMIR 56

Query: 67  IGSPSFFSTFA----------------RVEGMEGLADISIKLETRDDRSVRCLQINDV-V 109
            GS     +                   +   +   +  ++     D   +    N    
Sbjct: 57  NGSDKADISATFTMQPHSPAYLWLQEHELLDEDNPQECILRRMINIDGRSKAFVNNRSLP 116

Query: 110 IRVVDELNKHL 120
           +  + EL ++L
Sbjct: 117 VSQLRELGQYL 127


>gi|253999589|ref|YP_003051652.1| DNA repair protein RecN [Methylovorus sp. SIP3-4]
 gi|253986268|gb|ACT51125.1| DNA repair protein RecN [Methylovorus sp. SIP3-4]
          Length = 551

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 69/200 (34%), Gaps = 14/200 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I +F     L L FD   T+  G+ G GK+ +++A+S     RG    + +   R
Sbjct: 2   LQTLTIRDFVIVDQLNLEFDRGFTVLTGETGAGKSILIDALSLALGARGEGGVTRSGCDR 61

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND----------VVIRVVDEL 116
               + F      +  + L +  +  + +     R +  +             ++ + E 
Sbjct: 62  ADISASFHIAGLPDLQQWLDEHELPSDDQQLLLRRVIYADGRSKAFIGGMPATVQQLREA 121

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRNRLLT 174
            + L   +   +   +    +  +R+ LD       +     +    +  L   R     
Sbjct: 122 GEFLVDIYSQHAHHSLLK--TSYQRQTLDLYAGQSALAGDVAQHFHAWHALHERRLAAEQ 179

Query: 175 EGYFDSSWCSSIEAQMAELG 194
                +   + +  Q+ ELG
Sbjct: 180 NAAAYADELAELRDQLRELG 199


>gi|226329139|ref|ZP_03804657.1| hypothetical protein PROPEN_03042 [Proteus penneri ATCC 35198]
 gi|225202325|gb|EEG84679.1| hypothetical protein PROPEN_03042 [Proteus penneri ATCC 35198]
          Length = 169

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 18/97 (18%)

Query: 5  IKIKFLNISEFRNYASLR----LVF------DAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +KI  L    F+N  SL+    + F              G  G GKT +L+AIS     R
Sbjct: 1  MKILSLR---FKNINSLKGEWKINFNQEPFVSNGLFAITGPTGAGKTTLLDAISLALYHR 57

Query: 55 GFR-----RASYADVTRIGSPSFFSTFARVEGMEGLA 86
            R     ++    +TR  +         V+G+   A
Sbjct: 58 TPRLDKVTQSQNELMTRHTAECLAEVEFEVKGVAYRA 94


>gi|169825749|ref|YP_001695907.1| hypothetical protein Bsph_0141 [Lysinibacillus sphaericus C3-41]
 gi|168990237|gb|ACA37777.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 445

 Score = 42.6 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 68/410 (16%), Positives = 123/410 (30%), Gaps = 88/410 (21%)

Query: 16  RNYASLRLVFD--------AQHTIFVGDNGVGKTNILEAISFLSPGRG------FRRASY 61
           RN     ++          A      G NG GKT I++A   L              +  
Sbjct: 15  RNVRHGEIILAVNFETFLKANVVGLYGQNGSGKTTIVDAFGLLKTLISGWLAEVKLPSQE 74

Query: 62  ADVTRIGSPSF--------------FSTFARVEGMEGLADISIKLET---RDDRSVRCLQ 104
             +   G  +               F     VE  E    +   LE    R++   +  +
Sbjct: 75  KRLILAGEDTASLDFEFLVENQFGTFFVHYYVELQEDQHRLYTTLERLTYRENDKGKRSK 134

Query: 105 I------NDVVIRV--VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
           +      N + IR   + ++++  RI  LV            E R F    +F  D    
Sbjct: 135 VLMAMTENGIQIRNSHLPDMSEQARIQLLVIQQL-----ARKEYRSF----LFHKD---L 182

Query: 157 RRMIDFERLMRGRNRLLTEGYFD-SSWCSSIEAQMAELGVKINIARVEMINALSSLIMEY 215
           + ++  ERL     +LL     D +     +  Q       +   R+        +    
Sbjct: 183 KPLLQ-ERLTEQEIQLLQNMAVDFNRDLHVVNNQ---NIAPLFEERI--------MPFSI 230

Query: 216 VQKENFPHIKLSLTGFLDGKFDQ--SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
             ++    I   L G      D+  + C + E+  + L        +   T+     +  
Sbjct: 231 HLEKTRGQIPYDLKGPALLPEDEFYALCEVIEQSNRVLAA-----IIPGLTIKINIITKQ 285

Query: 274 IVDYCDKAITIAHGST-GEQKVVLV-----GIFLAHAR--LISNTTGFAPILLLDEISAH 325
            +D   + I     S  GEQ++ L       + +      LI+        +++D     
Sbjct: 286 TMDDGGQGIRFEFLSQRGEQELPLRTESEGILKIISVLSVLIAVYNNPNACVVID----E 341

Query: 326 LDEDKRNALFRIV-----TDIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
           LD      L   +      D   Q+F T  +  V + L     +   +N 
Sbjct: 342 LDSGVFEYLLGELLTVIDEDGKGQLFFTSHNLRVLEVLAIKNLWFTTTNE 391


>gi|332976892|gb|EGK13714.1| SMC protein family protein [Desmospora sp. 8437]
          Length = 496

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + + L I  F+++    + F     +FVG +  GK+ IL A+
Sbjct: 3  RFERLLIENFQSHEQTEVFFTEGLNVFVGPSDSGKSAILRAL 44


>gi|303233767|ref|ZP_07320421.1| DNA repair protein RecN [Finegoldia magna BVS033A4]
 gi|302495201|gb|EFL54953.1| DNA repair protein RecN [Finegoldia magna BVS033A4]
          Length = 565

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +  L I  F     + + F     I  G+ G GK+ ++EA   L
Sbjct: 2  LNSLYIENFAIIDKINVDFTEGLNIITGETGSGKSILIEAFELL 45


>gi|260887332|ref|ZP_05898595.1| DNA repair protein RecN [Selenomonas sputigena ATCC 35185]
 gi|330838915|ref|YP_004413495.1| DNA repair protein RecN [Selenomonas sputigena ATCC 35185]
 gi|260862968|gb|EEX77468.1| DNA repair protein RecN [Selenomonas sputigena ATCC 35185]
 gi|329746679|gb|AEC00036.1| DNA repair protein RecN [Selenomonas sputigena ATCC 35185]
          Length = 571

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 79/228 (34%), Gaps = 32/228 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +K L +  F     +++ F A   I  G+ G GK+ +++A+  +  G+  R A+ A   R
Sbjct: 2   LKTLTVWNFALLEHVKIEFGAGLNILTGETGAGKSILIDALGAV-LGK--RLAATA--IR 56

Query: 67  IGSPSFFSTFARVEGMEGLA-------------DISIKLETRDDRSVR-CLQIND--VVI 110
            G   +    A  +     A             D  + +  +     +  + +N   V +
Sbjct: 57  SGCE-WLRVEAVFDLEAQTALKSLLEEQAIPVEDDELIITRQVSHKGKSSVLLNGCRVTL 115

Query: 111 RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPR---H---RRRMIDFER 164
            ++ EL  +L    +    D +       +   LD    AI+ +   +        D ++
Sbjct: 116 ALLKELGAYL--VDIHGQHDNLALLRPENQLLLLDTSDAAIEKQRDVYQKSFAAWNDCKK 173

Query: 165 LMRGRNRLLTEGYFDSSWCSSIEAQM--AELGVKINIARVEMINALSS 210
            +R +                 E ++  A+L    +      I  LS+
Sbjct: 174 QLRAKEEEAKNTTERLDLLHWQEKEIEEADLKEAEDERIEAEIKKLSN 221


>gi|239832885|ref|ZP_04681214.1| Hypothetical protein OINT_1002178 [Ochrobactrum intermedium LMG
          3301]
 gi|239825152|gb|EEQ96720.1| Hypothetical protein OINT_1002178 [Ochrobactrum intermedium LMG
          3301]
          Length = 364

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +++   +   +R+  S+R+    Q  +FVG+NG GK+N+  A+  
Sbjct: 1  MRLVSFSAKGYRSLRSVRVDLG-QVAVFVGENGAGKSNLYRALQL 44


>gi|121708404|ref|XP_001272120.1| DNA repair protein Rad50 [Aspergillus clavatus NRRL 1]
 gi|119400268|gb|EAW10694.1| DNA repair protein Rad50 [Aspergillus clavatus NRRL 1]
          Length = 1382

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +   ++  F N  S  + F    T+ VG NG GKT I+E + + + G
Sbjct: 1  MTLPPTSVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 49


>gi|317490501|ref|ZP_07948981.1| ABC transporter [Eggerthella sp. 1_3_56FAA]
 gi|316910394|gb|EFV32023.1| ABC transporter [Eggerthella sp. 1_3_56FAA]
          Length = 504

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE+K + +   LA             +L LDE + HLD   R  + + ++       +
Sbjct: 112 SHGERKRIQIACALAA---------EPQVLALDEPTNHLDAPTRALVAQALSSFKGVGLL 162

Query: 348 TGTDKSVFDSLNETAKFMRISNHQALCI 375
              D+++ D L  +  F  +   +AL I
Sbjct: 163 VSHDRALLDKLVRSCVF--VEAGRALAI 188


>gi|304398634|ref|ZP_07380506.1| DNA repair protein RecN [Pantoea sp. aB]
 gi|304353845|gb|EFM18220.1| DNA repair protein RecN [Pantoea sp. aB]
          Length = 553

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 29/206 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L IS F     L + F    T   G+ G GK+  ++A+      R     + AD+ R
Sbjct: 2   LAQLTISNFAIVRELDIDFQRGMTAITGETGAGKSIAIDALGLCLGDR-----ADADMVR 56

Query: 67  IGS--------------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
            G+              PS           EG   +  ++ + D RS   +    V +  
Sbjct: 57  QGASRADLCARFQLKSSPSAQRWLVDNHLDEGNECLLRRVISADGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLMR 167
           + +L + L       +   +       ++  LD       +        +      R + 
Sbjct: 117 LRDLGQLLIQIHGQHAHQLLLK--PDHQKHLLDAYAGHDELLQQMRASYQTWNQSCRTLA 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL 193
              +   E             Q+ EL
Sbjct: 175 LHQQQAQERESRRELLQY---QLKEL 197


>gi|238694914|ref|YP_002922108.1| recombination endonuclease subunit [Enterobacteria phage JSE]
 gi|220029050|gb|ACL77985.1| recombination endonuclease subunit [Enterobacteria phage JSE]
          Length = 560

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 19 ASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
            + +  D  + T+  G NG GK+ ++EA+ F+  G+ FR      +  
Sbjct: 20 EPVEIQLDGFKKTLITGVNGAGKSTMIEALCFVLFGKPFRSIKKGQLIN 68


>gi|241691395|ref|XP_002411782.1| SMC protein, putative [Ixodes scapularis]
 gi|215504627|gb|EEC14121.1| SMC protein, putative [Ixodes scapularis]
          Length = 1229

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 3  NRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
           R+ I  +    F++YA  R+   F    T  VG NG GK+N+++++ F+   R
Sbjct: 25 PRLMISRIENLNFKSYAGKRVIGPFHKNFTAIVGPNGSGKSNVIDSLLFVFGYR 78


>gi|197121184|ref|YP_002133135.1| DNA repair protein RecN [Anaeromyxobacter sp. K]
 gi|196171033|gb|ACG72006.1| DNA repair protein RecN [Anaeromyxobacter sp. K]
          Length = 606

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   ++I  L + +     ++ + F     +  G+ G GK+ ++ A+  +  GR      
Sbjct: 1  MLTTLRISGLAVVD-----AVEVRFGPGLNVLTGETGAGKSILVNALHLVLGGR-----M 50

Query: 61 YADVTRIGSPSFFS 74
           ADV R G+     
Sbjct: 51 TADVLREGADEAVV 64


>gi|145295548|ref|YP_001138369.1| hypothetical protein cgR_1475 [Corynebacterium glutamicum R]
 gi|140845468|dbj|BAF54467.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 593

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 49/292 (16%), Positives = 89/292 (30%), Gaps = 62/292 (21%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I I+ L +       +    F +  T+  G+ G GKT ++  +  LS GR     +
Sbjct: 1   MLVDIAIENLGV-----IPAASAEFSSGLTVLTGETGAGKTMVVTGLRLLSGGR-----A 50

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDR----------------SVRCLQ 104
            A   R GSP      A VEG      +   +  R                   +VR + 
Sbjct: 51  DASRVRTGSPQ-----AVVEGRFVTQGVPCDIVERATGIVSNAGGAADENGEFLAVRSVG 105

Query: 105 IND----------VVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR---MVFAI 151
            N           V    + E +  L          R+       +   LDR    +  +
Sbjct: 106 ANGRSKAHLGGRSVPAATLSEFSDELLTIHGQNDQLRLL--SPERQLDALDRFDPELAQL 163

Query: 152 DPRH---RRRMIDFERLMRGRNRLLTEGYFDSSWCS-SIEA---------QMAELGVKIN 198
              +          ++ ++ R     E   +      +I           + AEL  +I 
Sbjct: 164 RKNYNAKYLTWKSLDKDLQKRLSSRRELAQEVDRLQFAINEIEEVSPQPGEDAELVEQI- 222

Query: 199 IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKK 250
             R++ ++ L       +   +     L       G FD+S  +  ++  + 
Sbjct: 223 -RRLQDVDTLREQAATALAAIDGAG-SLGDAMGGSGGFDESQESASDQLGQA 272


>gi|86157159|ref|YP_463944.1| DNA repair protein RecN [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773670|gb|ABC80507.1| DNA replication and repair protein RecN [Anaeromyxobacter
          dehalogenans 2CP-C]
          Length = 606

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   ++I  L + +     ++ + F     +  G+ G GK+ ++ A+  +  GR      
Sbjct: 1  MLTTLRISGLAVVD-----AVEVRFGPGLNVLTGETGAGKSILVNALHLVLGGR-----M 50

Query: 61 YADVTRIGSPSFFS 74
           ADV R G+     
Sbjct: 51 TADVLREGADEAVV 64


>gi|325292228|ref|YP_004278092.1| ABC transporter nucleotide-binding protein/ATPase [Agrobacterium
           sp. H13-3]
 gi|325060081|gb|ADY63772.1| ABC transporter, nucleotide binding/ATPase protein [Agrobacterium
           sp. H13-3]
          Length = 543

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 23/151 (15%)

Query: 203 EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            +I+ L + +M+  Q ++      SL   + G  DQS   + ++        R+ D   +
Sbjct: 377 RLISLLKAAVMDEGQIQDGIKATPSL---VAGYVDQSLAEIDDDSTPFALMTRRFDIGDQ 433

Query: 263 RT---LIGPHRSDLIVDYCDKAITIAHGSTGEQ-KVVLVGIFLAHARLISNTTGFAPILL 318
           R    L G       +D   +   IA  S G++ ++ ++ + LA               L
Sbjct: 434 RIHGLLAGAG-----IDMEMQKRRIATLSGGQKARLAMLALRLAE----------PNFYL 478

Query: 319 LDEISAHLDEDKRNAL-FRIVTDIGSQIFMT 348
           LDE + HLD D + AL   I+    S +F++
Sbjct: 479 LDEPTNHLDIDGQEALEAEIINRSASCVFVS 509


>gi|308510917|ref|XP_003117641.1| hypothetical protein CRE_00460 [Caenorhabditis remanei]
 gi|308238287|gb|EFO82239.1| hypothetical protein CRE_00460 [Caenorhabditis remanei]
          Length = 1031

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 6/73 (8%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQ-HTIFV--GDNGVGKTNILEAISFLSPGRGF---RRA 59
           +I  + +  F  +  L + F+ + +  F   G NG GK+ +  AI     G+     R  
Sbjct: 98  RIAKVELENFMCHKHLLIEFNVRDNNCFYIGGANGSGKSALFAAIHLGLGGKASDNNRGD 157

Query: 60  SYADVTRIGSPSF 72
           +     +    S 
Sbjct: 158 NVKQYIKDDEGSA 170


>gi|281211350|gb|EFA85515.1| DNA recombination/repair protein [Polysphondylium pallidum PN500]
          Length = 1301

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ L +   R++    S  + F    T+ VG NG GKT I+E + + S G
Sbjct: 4  IEKLLVQGIRSFDPNESSVIDFYKPLTLIVGVNGAGKTTIIECLKYASTG 53


>gi|57866880|ref|YP_188557.1| CbbQ/NirQ/NorQ/GpvN family protein [Staphylococcus epidermidis
           RP62A]
 gi|81674636|sp|Q5HPD3|Y979_STAEQ RecName: Full=Uncharacterized protein SERP0979
 gi|57637538|gb|AAW54326.1| CbbQ/NirQ/NorQ/GpvN family protein [Staphylococcus epidermidis
           RP62A]
 gi|319400763|gb|EFV88982.1| ATPase family associated with various cellular activities (AAA)
           family protein [Staphylococcus epidermidis FRI909]
          Length = 263

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 77/246 (31%), Gaps = 13/246 (5%)

Query: 18  YASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTF 76
           +   + +F     I + G  G GKT + E +S +      +     D+       F +  
Sbjct: 14  FEDAKALFQLNKNILLKGPTGSGKTKLAETLSHVMNLPMHQVNCSVDLDTESLLGFKTIQ 73

Query: 77  ARVEGMEGL--ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL--RISWLVPSMDRI 132
              EG + +   D  +    ++   +   +IN      +  LN  L  R     P    +
Sbjct: 74  TNEEGHQEIVFIDGPVIKAMKEGHILYIDEINMAKPETLPILNGVLDYRRQLTNPYTGEV 133

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCS-SIEAQMA 191
                         ++ AI+  +   +      ++ R  ++   Y D       I+ Q  
Sbjct: 134 IKAAPGF------NVIAAINEGYVGTLP-MNEALKNRFIVIEVDYIDGDILKTVIKEQSK 186

Query: 192 ELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKL 251
               ++    ++    L ++  +    E    I+  +             A++     KL
Sbjct: 187 LQDEQLIQHIIKFNEDLRTMTKQGQISEEAASIRALIDLSDLATVMPIERAVQRTIIDKL 246

Query: 252 FDGRKM 257
            D R+ 
Sbjct: 247 EDEREQ 252


>gi|88597636|ref|ZP_01100869.1| conserved hypothetical protein [Campylobacter jejuni subsp.
          jejuni 84-25]
 gi|88189940|gb|EAQ93916.1| conserved hypothetical protein [Campylobacter jejuni subsp.
          jejuni 84-25]
          Length = 714

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          KIK +N   F NY S  L F+ +  I  G NG GK++++
Sbjct: 4  KIKQVNYKSFNNYNSSGLEFN-RINILYGRNGQGKSSLV 41


>gi|293603949|ref|ZP_06686363.1| SMC structural maintenance of chromosomes partitioning protein
          [Achromobacter piechaudii ATCC 43553]
 gi|292817642|gb|EFF76709.1| SMC structural maintenance of chromosomes partitioning protein
          [Achromobacter piechaudii ATCC 43553]
          Length = 1177

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
          +++  L ++ F+++    ++    Q    VG NG GK+NI++A+   L   +    R  S
Sbjct: 1  MRLTQLKLAGFKSFVDPTVIPVPSQLVGVVGPNGCGKSNIIDAVRWVLGEAKASELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|304316838|ref|YP_003851983.1| SMC domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
 gi|302778340|gb|ADL68899.1| SMC domain protein [Thermoanaerobacterium thermosaccharolyticum DSM
           571]
          Length = 853

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 9   FLNISEFRNYASLRL-VFDA-QHTIFVGDNGVGKTNILEAISFLSPGR-----GFRRASY 61
            L +  F +Y+   +  F        VG NG GK+ + +AI++   GR        R S 
Sbjct: 5   KLTLKNFMSYSEHEVMDFTRFHVAAIVGKNGNGKSALWDAITWCIWGRARGLDSAGRGSD 64

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            D+ RIG+      F           +  K    +      +  +D  ++ + +
Sbjct: 65  -DLIRIGADEMEVEFIFKINNTKYRILRKKKRNSNSILEFNIINDDGTLKSLTQ 117


>gi|229061693|ref|ZP_04199030.1| ABC transporter, ATP-binding protein [Bacillus cereus AH603]
 gi|228717606|gb|EEL69265.1| ABC transporter, ATP-binding protein [Bacillus cereus AH603]
          Length = 209

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 2  QSLAFHPNVTFIIGENGTGKSTLLEAIAVALGFNAEGGTKNFR 44


>gi|33620623|ref|NP_891605.1| recombination endonuclease subunit [Enterobacteria phage RB49]
 gi|33438522|gb|AAL87829.2|AF410869_1 recombination endonuclease subunit [Enterobacteria phage RB49]
          Length = 560

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 19 ASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
            + +  D  + T+  G NG GK+ ++EA+ F+  G+ FR      +  
Sbjct: 20 EPVEIQLDGFKKTLITGVNGAGKSTMIEALCFVLFGKPFRSIKKGQLIN 68


>gi|34849666|gb|AAH58180.1| Rad50 protein [Mus musculus]
          Length = 661

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIISFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|260767431|ref|ZP_05876368.1| hypothetical protein VFA_000482 [Vibrio furnissii CIP 102972]
 gi|260617543|gb|EEX42725.1| hypothetical protein VFA_000482 [Vibrio furnissii CIP 102972]
          Length = 675

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 23/127 (18%)

Query: 7   IKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           I+ + I  FR++      +  L   +   I  G N  GK+NI+ A++       F   + 
Sbjct: 11  IEKIEIKNFRSFGNRKGDTTNLDKLSSLNILSGSNDSGKSNIIRALNLF-----FNGHTD 65

Query: 62  ADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLR 121
            D        F   F + E  +   DI+ K+ T     V+    N+         NK   
Sbjct: 66  ID----NFFDFQRDFFKKEMSDDENDINEKVVT-----VKIFFRNEKNQNK----NKQHP 112

Query: 122 ISWLVPS 128
               +P 
Sbjct: 113 TKVFLPE 119


>gi|220915885|ref|YP_002491189.1| DNA repair protein RecN [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953739|gb|ACL64123.1| DNA repair protein RecN [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 606

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   ++I  L + +     ++ + F     +  G+ G GK+ ++ A+  +  GR      
Sbjct: 1  MLTTLRISGLAVVD-----AVEVRFGPGLNVLTGETGAGKSILVNALHLVLGGR-----M 50

Query: 61 YADVTRIGSPSFFS 74
           ADV R G+     
Sbjct: 51 TADVLREGADEAVV 64


>gi|163855860|ref|YP_001630158.1| DNA repair protein [Bordetella petrii DSM 12804]
 gi|163259588|emb|CAP41889.1| DNA repair protein [Bordetella petrii]
          Length = 553

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 62/193 (32%), Gaps = 15/193 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRASYA 62
           ++ L+I +F       + F A  T+F G+ G GK+ +++A++     R      R  +  
Sbjct: 2   LRTLHIRDFVIVEQAEIHFGAGFTVFSGETGAGKSILIDALALALGERADVGVLREGAAR 61

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVI--RVVDELNKH 119
                      +  A +   +      + L    D   R    IN +      + EL   
Sbjct: 62  ADITALFDVPDTLRAWLAERDLDGGDELALRRVVDAQGRSRGYINGMPATLAQLRELGDS 121

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRMVFA--IDPRHRRRMIDFERLMRGRNRLLTEGY 177
           L       +   +    +   R  LD       +     +   D+  L R     L    
Sbjct: 122 LVDIHGQHAHQSLMRTDAQ--RDLLDAHGGHGELRQAVAQAWKDWRALARQ----LELAE 175

Query: 178 FDSSWCSSIEAQM 190
            D +  ++   ++
Sbjct: 176 KDEAGLAAERERL 188


>gi|119357502|ref|YP_912146.1| hypothetical protein Cpha266_1704 [Chlorobium phaeobacteroides DSM
           266]
 gi|119354851|gb|ABL65722.1| hypothetical protein Cpha266_1704 [Chlorobium phaeobacteroides DSM
           266]
          Length = 264

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 28  QHTIFVGDNGVGKTNILEAISFLS 51
           +   F+G NGVGK+NILEA+  L 
Sbjct: 221 RVNCFIGANGVGKSNILEALGVLG 244


>gi|323474298|gb|ADX84904.1| high-affinity zinc uptake, ATP-binding protein [Sulfolobus
          islandicus REY15A]
          Length = 210

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 7  IKFLNI--SEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          IK L+I   +F    ++ L  + Q  + +G NG GKT +L AIS + P +G
Sbjct: 4  IKDLSINFEDFTILKNINLKLENQVCVILGPNGSGKTTLLRAISGIIPYKG 54


>gi|310790058|gb|EFQ25591.1| hypothetical protein GLRG_00735 [Glomerella graminicola M1.001]
          Length = 1307

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 6  KIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          KI  L++   R++  +   + F    T+ VG NG GKT I+E + + + G
Sbjct: 3  KIDKLSVQGIRSFGGSRETISFYTPLTLIVGYNGSGKTTIIECLKYATTG 52


>gi|325982437|ref|YP_004294839.1| DNA repair protein RecN [Nitrosomonas sp. AL212]
 gi|325531956|gb|ADZ26677.1| DNA repair protein RecN [Nitrosomonas sp. AL212]
          Length = 559

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 79/267 (29%), Gaps = 43/267 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L+I +F     + L F +  T+  G+ G GK+ +++A++     RG      A   R
Sbjct: 2   LRHLSIKDFVIVEQIELDFMSGFTVLTGETGAGKSILIDALALTLGERG-----DAGQIR 56

Query: 67  IGSPSFFS-------------TFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
           +G                    +     ++G AD  +     +        IN     ++
Sbjct: 57  LGCERAEINVTFDINQLPELFRWLNDSDLQGDADSCLMRRIIETSGRSRSYINGHAATLQ 116

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLD-----RMVFAIDPRHRRRMIDFERLM 166
            +  + ++L       +   +       +   LD       +        R   D     
Sbjct: 117 QLRTVGEYLVAIHSQHAHQSLMQKD--VQCELLDAFAGRDDLVQAVKLKYRHWQDCH--- 171

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
           + +  +             +E Q+ EL                +  +E  Q     H +L
Sbjct: 172 QQKVAMQHRTAESQDKREQLEWQLQELAA-------------LNFTLEEWQALQTDHRRL 218

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFD 253
           S    L    D S   L E     L  
Sbjct: 219 SHVAALLAAADTSIDTLSENENAALMQ 245


>gi|87160819|ref|YP_493999.1| ATPase family protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|161509574|ref|YP_001575233.1| nitric-oxide reductase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294850781|ref|ZP_06791497.1| nitric-oxide reductase NorQ protein [Staphylococcus aureus A9754]
 gi|123485968|sp|Q2FH29|Y1302_STAA3 RecName: Full=Uncharacterized protein SAUSA300_1302
 gi|87126793|gb|ABD21307.1| ATPase family protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|160368383|gb|ABX29354.1| nitric-oxide reductase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|294822356|gb|EFG38809.1| nitric-oxide reductase NorQ protein [Staphylococcus aureus A9754]
 gi|315195872|gb|EFU26239.1| nitric-oxide reductase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320142173|gb|EFW33991.1| ATPase family [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 263

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 18/257 (7%)

Query: 12  ISEFRN-----YASLRLVFDAQHTIFV-GDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           +  ++N     +   + +FD    I + G  G GKT + E +S +      +     D+ 
Sbjct: 3   LKHYKNSDSTVFNDAKALFDLNKNILLKGPTGSGKTKLAETLSEVVDTPMHQVNCSVDLD 62

Query: 66  RIGSPSFFSTFARVEGMEGL--ADISIKLETRDDRSVRCLQINDVVIRVVDELNKHL--R 121
                 F +     EG + +   D  +    ++   +   +IN      +  LN  L  R
Sbjct: 63  TESLLGFKTIKTNAEGQQEIVFVDGPVIKAMKEGHILYIDEINMAKPETLPVLNGVLDYR 122

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
                P    +   +          ++ AI+  +   +      ++ R  ++   Y D  
Sbjct: 123 RQITNPYTGEVIKAVPGF------NVIAAINEGYVGTLP-MNEALKNRFVVIHVDYIDGD 175

Query: 182 WCS-SIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
                I+ Q    G K     ++    L ++  +    E    I+  L            
Sbjct: 176 ILKNVIKEQSLLQGDKQIEQIIKFNEDLRTMSKQGQISEEAASIRALLDLCDLITVMPVE 235

Query: 241 CALKEEYAKKLFDGRKM 257
            A+K     KL D R+ 
Sbjct: 236 RAIKRTIIDKLEDEREQ 252


>gi|82701278|ref|YP_410844.1| ATP-dependent OLD family endonuclease [Nitrosospira multiformis
           ATCC 25196]
 gi|82409343|gb|ABB73452.1| ATP-dependent endonuclease of the OLD family-like protein
           [Nitrosospira multiformis ATCC 25196]
          Length = 681

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 3   NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
           + + +    ++ FR+  +   +     T  +G N  GKTN+L
Sbjct: 76  HPMHLTRFLVTNFRSVENSGWIEVDSVTALIGVNESGKTNLL 117


>gi|332978608|gb|EGK15312.1| SMC domain protein [Psychrobacter sp. 1501(2011)]
          Length = 1358

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 12/97 (12%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDA------QHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          +++  L +    +      + F              G  G GKT IL+AI     G   R
Sbjct: 1  MRLIELRLKNLNSLKGEWHIDFSDKAFVNEGIFAITGQTGAGKTTILDAICLALYGETPR 60

Query: 58 -----RASYADVTRIGSPSFFSTFARVEGMEGLADIS 89
               ++S   +TR  +  F      + G++      
Sbjct: 61 INSISKSSNEVMTRQTAECFAEVVIELNGVQYRCRWG 97


>gi|329114045|ref|ZP_08242809.1| Hypothetical protein APO_0819 [Acetobacter pomorum DM001]
 gi|326696584|gb|EGE48261.1| Hypothetical protein APO_0819 [Acetobacter pomorum DM001]
          Length = 695

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 24/50 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
          +++    ++ FR+      +  +     +G N  GK+N+L  +  L+P R
Sbjct: 1  MRLTGFRVTNFRSVVDSGWITASAVNALIGVNESGKSNLLLPLWKLNPAR 50


>gi|313906261|ref|ZP_07839605.1| AAA ATPase [Eubacterium cellulosolvens 6]
 gi|313468881|gb|EFR64239.1| AAA ATPase [Eubacterium cellulosolvens 6]
          Length = 244

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFL 50
          L F+   TIFVG+NG GK+ +LEAI+  
Sbjct: 38 LAFNKNITIFVGENGSGKSTMLEAIAVC 65


>gi|168209101|ref|ZP_02634726.1| putative ATPase involved in DNA repair [Clostridium perfringens B
          str. ATCC 3626]
 gi|170712783|gb|EDT24965.1| putative ATPase involved in DNA repair [Clostridium perfringens B
          str. ATCC 3626]
          Length = 797

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)

Query: 5  IK--IKFLNISEFRNYAS-----LRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +K  I  + +  F+   +     +    D       G NG GKT I +AI  
Sbjct: 1  MKYYINKIYMKNFKCIKNETGVLVNFNLDKGLIALSGPNGFGKTTIFDAIEL 52


>gi|149919319|ref|ZP_01907801.1| ATPase-like protein [Plesiocystis pacifica SIR-1]
 gi|149819819|gb|EDM79243.1| ATPase-like protein [Plesiocystis pacifica SIR-1]
          Length = 385

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L IS +R+   L L F A  T+  G NGVGK+++   +  L+
Sbjct: 2  LHTLAISNYRSIRELALPFGA-LTVVSGANGVGKSSLYRCLRLLA 45


>gi|114561276|ref|YP_748789.1| ABC transporter related [Shewanella frigidimarina NCIMB 400]
 gi|114332569|gb|ABI69951.1| ABC transporter related [Shewanella frigidimarina NCIMB 400]
          Length = 373

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 28/131 (21%)

Query: 249 KKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLIS 308
           K+L   R +D + R  L G     L              S G+++ V +   LA      
Sbjct: 111 KELRKQRALDWLERVNLHGLP-DRLPAQL----------SGGQRQRVALARALA------ 153

Query: 309 NTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ-----IFMTGTDKSVFDSLNETAK 363
                  ILLLDE  + +D + R  L+  +  +  Q     + +T     + ++L    K
Sbjct: 154 ---REPAILLLDEPFSAVDRETRERLYIELARLKQQLSIPVVMVT---HDIHEALLLADK 207

Query: 364 FMRISNHQALC 374
            + IS  Q L 
Sbjct: 208 MILISQGQMLQ 218


>gi|312899706|ref|ZP_07759029.1| RecF/RecN/SMC protein [Enterococcus faecalis TX0470]
 gi|311293138|gb|EFQ71694.1| RecF/RecN/SMC protein [Enterococcus faecalis TX0470]
          Length = 450

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPG 53
          +KI  L +   +   ++ +  +    TI  G+N  GKT++L+AI++   G
Sbjct: 18 VKINSLEVENVKRVKAVVIQPNENGLTILGGNNNQGKTSVLDAIAWALGG 67


>gi|310779273|ref|YP_003967606.1| DNA replication and repair protein RecN [Ilyobacter polytropus DSM
           2926]
 gi|309748596|gb|ADO83258.1| DNA replication and repair protein RecN [Ilyobacter polytropus DSM
           2926]
          Length = 553

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 90/272 (33%), Gaps = 50/272 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I        L L F        G+ G GK+ IL  I+ L   +     +  ++ R
Sbjct: 2   LRELRIENLAIIEELELEFGDGLITLTGETGAGKSIILSGINLLIGEK-----ANVEMLR 56

Query: 67  IGSPSFFSTFA---RVEGMEGLADISIKLETR--------DDRSVRCLQINDVVIRVVDE 115
            G     +           E L ++ I++E          D        +N   +  V  
Sbjct: 57  DGEEYLMAEGVFETSDYQTEELKELGIEVEEGELIVRRVLDKNGRGKAFVNGKRV-PVSS 115

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L + +                          +V     +      +  +L+    + L +
Sbjct: 116 LKQIMGTLV---------------------DLVGQHSHQMLLNKNNHIKLLD---KFLGD 151

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGK 235
              D    S IE  +   G KI+      I+ +  +  E  +K++F   +L+    L  K
Sbjct: 152 KSQDIR--SKIENTVERYG-KISRK----ISEIEEIKKEIQEKKDFYEFQLNEINSLSLK 204

Query: 236 FDQSFCALKEEYAKKLFDGRKMD-SMSRRTLI 266
             +    L++EY K    G+  +  ++  TL+
Sbjct: 205 SGED-EELEDEYKKLFNSGKIKENLINSYTLL 235


>gi|307721074|ref|YP_003892214.1| SMC domain-containing protein [Sulfurimonas autotrophica DSM 16294]
 gi|306979167|gb|ADN09202.1| SMC domain protein [Sulfurimonas autotrophica DSM 16294]
          Length = 514

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 57/167 (34%), Gaps = 13/167 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+   + ++ ++    L   +   +F G +G GK+ ++E+I   S G     +  A +  
Sbjct: 2   IERFYLKDYLSFKETELNLQSGLIVFTGPSGSGKSILMESI-LASVGGS---SCDAAL-- 55

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV-----VDELNKHLR 121
               S  +     E      D     +       R    N  + +           +HL 
Sbjct: 56  --CESCVTWDIDEESTSIDNDDVNVFKHIKKEKSRYFINNQSLSKKSISAVASNYLRHLS 113

Query: 122 ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +       +    G+  +R     + V  +   +++  ++++ + + 
Sbjct: 114 LKDFSDFENENLLGILDKRAGAKSQKVAKLKESYQKSFLEYQEVKKE 160


>gi|296328225|ref|ZP_06870756.1| transporter [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154737|gb|EFG95523.1| transporter [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 441

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTI------FVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           ++ +  +++   L +    +           G+NG+GK+N +++   L      R  + 
Sbjct: 3  TYIKLKNYKSLIELEVDLTKKENTPKKLISIYGENGIGKSNFVDSFYTLKRIISTRTINE 62

Query: 62 A 62
           
Sbjct: 63 K 63


>gi|262191972|ref|ZP_06050138.1| hypothetical protein VIH_002352 [Vibrio cholerae CT 5369-93]
 gi|262032147|gb|EEY50719.1| hypothetical protein VIH_002352 [Vibrio cholerae CT 5369-93]
          Length = 428

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 56/168 (33%), Gaps = 25/168 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL----------------EAISFL 50
           I  +    +R +  L +  D    +F G NG GKT +L                +A    
Sbjct: 2   ITRIEAYRYRCFNKLDIELD-NLHVFAGSNGSGKTTLLDIPALIGDILTVSDINDAFFKP 60

Query: 51  SPGRGFRRASY--ADVTRIGSPSFFSTFARVEGMEGLADI-----SIKLETRDDRSVRCL 103
             GR  R  +    ++        F+     E  E    +       +  T+ +     +
Sbjct: 61  MNGR-ERARADSPRELVHKLKGDNFTLVLEAEIPEQQQILLEQVGPARFRTKPENRSNTI 119

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI 151
           +    +  V D+L        L  + DR+  G  ++  RF +  VF +
Sbjct: 120 RYELSIGIVEDKLEVKEEHLMLFNNNDRVVHGGEIQGGRFDNENVFQV 167


>gi|251788305|ref|YP_003003026.1| DNA replication and repair protein RecF [Dickeya zeae Ech1591]
 gi|247536926|gb|ACT05547.1| DNA replication and repair protein RecF [Dickeya zeae Ech1591]
          Length = 333

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          L +     +   +  F     +F+G+NG GKT++++ +  L
Sbjct: 5  LELENLGAFKEAKFDFTNGINVFIGENGTGKTHVMKLLYCL 45


>gi|257060274|ref|YP_003138162.1| DNA sulfur modification protein DndD [Cyanothece sp. PCC 8802]
 gi|256590440|gb|ACV01327.1| DNA sulfur modification protein DndD [Cyanothece sp. PCC 8802]
          Length = 661

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 68/223 (30%), Gaps = 23/223 (10%)

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
            +    + ++  D  +      + +   D++            G            ++ +
Sbjct: 423 VAASPEDYQKLSD-ALTQAQKDYGKCQRDYD-------GEEQRGKQIEKLIQQTINELKK 474

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
              ++   + +    L        Q       +L+L      K ++    + E +   L 
Sbjct: 475 YSEEVIDRQND--EHLIKSAARVQQTLTLFKERLTLK-----KLNKLEGEVTECFRYLLH 527

Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
                D + R  +     S  + D   + +     S GE++++ +    A    ++  +G
Sbjct: 528 KS---DLVHRVAIDTHTFSISLFDPQGQPVAKHRLSAGEKQLLAI----AFLWGLARVSG 580

Query: 313 FAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGTDKSV 354
               + +D     LD   R+ L          Q+ +  TD  +
Sbjct: 581 RNLPIAIDTPLGRLDSSHRSNLVERYFPTASHQVILLSTDTEI 623


>gi|19704421|ref|NP_603983.1| transporter [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19714681|gb|AAL95282.1| Transporter [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 441

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 8  KFLNISEFRNYASLRLVFDAQHTI------FVGDNGVGKTNILEAISFLSPGRGFRRASY 61
           ++ +  +++   L +    +           G+NG+GK+N +++   L      R  + 
Sbjct: 3  TYIKLKNYKSLIELEVDLTKKENTPKKLISIYGENGIGKSNFVDSFYTLKRIISTRTINE 62

Query: 62 A 62
           
Sbjct: 63 K 63


>gi|15828667|ref|NP_326027.1| ABC transporter ATP-binding protein [Mycoplasma pulmonis UAB CTIP]
 gi|14089609|emb|CAC13369.1| ABC TRANSPORTER ATP-BINDING PROTEIN [Mycoplasma pulmonis]
          Length = 235

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 17/127 (13%)

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L  G        +      R D+I     K  +    S+G++K VL+         I  
Sbjct: 102 ALLSGMDKAKAKEKIKDMLTRLDIIDLINKKPYSF---SSGQKKKVLL---------IQA 149

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMTGTDKSVFDSLNETAKFMR 366
                 +++LDE +A+LD   R  LF+I+ D+ +Q   IF++    S  D   ++   + 
Sbjct: 150 LIHEPDLIILDEPAANLDPSARYELFKILEDLKNQGKTIFISSHILSEIDKYIDSLTLIH 209

Query: 367 ISNHQAL 373
             + Q +
Sbjct: 210 --DGQIV 214


>gi|77408041|ref|ZP_00784790.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
 gi|77173403|gb|EAO76523.1| conserved hypothetical protein [Streptococcus agalactiae COH1]
          Length = 277

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 8  KFLNISEFRNYASLRLVFDAQ-----HTIFVGDNGVGKTNILEAISFL 50
            +    F ++++L      +          G+NG GKTNI+EA   L
Sbjct: 3  SKIEFKNFMSFSNLTFDLLNRGKCKDIIAIYGENGSGKTNIVEAFKLL 50


>gi|311898146|dbj|BAJ30554.1| hypothetical protein KSE_47740 [Kitasatospora setae KM-6054]
          Length = 312

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 12/77 (15%)

Query: 5  IKIKFLNISEFRNYA-----SLRLVFDAQHTIFVGDNGVGKTNILEAISF-LSPGRGFRR 58
          + +  + +S  + +       L +      T+F G NG GKT +L A++  L        
Sbjct: 4  VYVSRIRVSGVKCFDGAREVDLAIPPGPGWTVFAGPNGSGKTTLLRALAMALGALPS--- 60

Query: 59 ASYADVTRIGSPSFFST 75
                 R G+  +   
Sbjct: 61 ---GPPARWGARGWVRA 74


>gi|307269931|ref|ZP_07551257.1| RecF/RecN/SMC protein [Enterococcus faecalis TX4248]
 gi|306513721|gb|EFM82327.1| RecF/RecN/SMC protein [Enterococcus faecalis TX4248]
          Length = 450

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPG 53
          +KI  L +   +   ++ +  +    TI  G+N  GKT++L+AI++   G
Sbjct: 18 VKINSLEVENVKRVKAVVIQPNENGLTILGGNNNQGKTSVLDAIAWALGG 67


>gi|182677340|ref|YP_001831486.1| hypothetical protein Bind_0343 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633223|gb|ACB93997.1| conserved hypothetical protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 385

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 18/140 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++   +  +R+  S+         IFVG NG+GKTN+  A+               ++ R
Sbjct: 5   VREFRVRGYRSLKSITYPIS-GLDIFVGANGIGKTNLYHAL---------------ELIR 48

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL--QINDVVIRVVDELNKHLRISW 124
             + +  +     EG    A  +      +   +R      +    R    + ++     
Sbjct: 49  SAAANTLARDLVKEGGLQSALWAGPRHRSEPARIRLAVGLSDPARQRSGAIIYRYEVAVG 108

Query: 125 LVPSMDRIFSGLSMERRRFL 144
             P     F      +   L
Sbjct: 109 FPPPTSAAFLAEPQVKEEIL 128


>gi|119509141|ref|ZP_01628292.1| hypothetical protein N9414_05050 [Nodularia spumigena CCY9414]
 gi|119466307|gb|EAW47193.1| hypothetical protein N9414_05050 [Nodularia spumigena CCY9414]
          Length = 437

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 67/402 (16%), Positives = 130/402 (32%), Gaps = 70/402 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++FL    ++N +  ++V   +  IF+G N  GK+N    IS L   +        +   
Sbjct: 6   LRFLITKNYKNLSLEQVVELQKLNIFIGANNSGKSNF---ISCLKFLKSSLTKIPDE--N 60

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G  SF    ++  G + + DIS+    R   +       +  I    + ++ L I   V
Sbjct: 61  RGVSSFEDAISQC-GGDRILDISVDSPARVRLAYCFEFPQNTQINTASKDSRILDIKIFV 119

Query: 127 P--------SMDRIFSG---------LSMERRRFLDRMVFAIDPRHRRRMIDFE---RLM 166
                      + +++G               +F DR         +  +  ++   + +
Sbjct: 120 NKPNLKVSIGEEYLYNGVNLHDYNSSTPFYYYKFHDREFG------KGAVSVYDEPGQTL 173

Query: 167 RGRNRLLTEGYFDSSWCSSIEAQMAELGVK------INIARVEMINALSSLIMEYVQKEN 220
           R     L +   +S   ++I  ++ E          +   R E+I  +S          +
Sbjct: 174 RTHFEGLEDIPSNSLGLATI-PKLLEHSQYPPENTPVYKVRRELIELVSQWQFYNANNMD 232

Query: 221 FPHIKLS--LTGFLDGKFDQSFCAL--------------KEEYAKKLFDGRKMDSMSRRT 264
              I+LS    G  D    QS   L              +E     L          R  
Sbjct: 233 LNEIRLSEPKIGGSDIYLSQSGDNLPLVLDNLIQQDIEFEESINIALKAILPKSRRLRPI 292

Query: 265 LIGPHRSDLIVDYCDKAITIAHG----STGEQKVVLVGIFLAHARLISNTTGFAPILLLD 320
             G  R  L ++   + I  A      S G  +++     L H+ ++        +L++D
Sbjct: 293 RSG--RLSLTLELYFQDIKEAFCLNELSDGTVRMLCWATIL-HSPIL------PSLLVID 343

Query: 321 EISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDSLNE 360
           E    L       L   +      +Q+ +T     + D   +
Sbjct: 344 EPELGLHVSWMPILAEWIKKAARKTQVIITTHSPDLLDHFTD 385


>gi|73946574|ref|XP_533529.2| PREDICTED: similar to SMC5 protein isoform 1 [Canis familiaris]
          Length = 1091

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 32/102 (31%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I  + +  F  Y    +       + +G NG GK++I+ AI     G+         V  
Sbjct: 57  IVRIVMENFLTYDICEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 116

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                       +E      ++ I  E    ++     IN  
Sbjct: 117 FVKRGCSKGMVEIELFRTSGNLIITREIDVAKNQSSWFINKK 158


>gi|88807230|ref|ZP_01122742.1| putative chromosome segregation protein, SMC ATPase superfamily
          protein [Synechococcus sp. WH 7805]
 gi|88788444|gb|EAR19599.1| putative chromosome segregation protein, SMC ATPase superfamily
          protein [Synechococcus sp. WH 7805]
          Length = 1183

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYADVTRIG 68
          + +  +   T+  G NG GK+NIL+ + F   L+  RG R     D+   G
Sbjct: 1  MSIPLEPGFTVVTGPNGSGKSNILDGVLFCLGLANSRGMRADRLPDLVNSG 51


>gi|313837511|gb|EFS75225.1| DNA repair protein RecN [Propionibacterium acnes HL037PA2]
 gi|314927281|gb|EFS91112.1| DNA repair protein RecN [Propionibacterium acnes HL044PA1]
 gi|314972717|gb|EFT16814.1| DNA repair protein RecN [Propionibacterium acnes HL037PA3]
          Length = 560

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 57/364 (15%), Positives = 111/364 (30%), Gaps = 37/364 (10%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   ++I+ L + +        L   +  T   G+ G GKT ++  I  L   +     +
Sbjct: 1   MIRSVRIRGLGVID-----ETLLEPSSALTAVTGETGAGKTMVVTGIGLLLGDK-----A 50

Query: 61  YADVTRIGSPSFFSTFA-------RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVV 113
              + R G                RV  + G  +    +  R   + R   +        
Sbjct: 51  DTGLVRHGCDRAVVEAILDAPCADRVNELGGTVEDDEVICARHITTRRSRALLGGAQVTA 110

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERR-----RFLDRMVFAIDPRHRRRMIDFERLMRG 168
            +L + +     +         +   R+     R     +     +H +   +F R +  
Sbjct: 111 SQLARIVGDQVTIYGQSEQVRLVDASRQLDVVDRAAGDDLSDHLSQHAQLWSEF-RAVSQ 169

Query: 169 RNRLLTEGYFDSSW-CSSIEAQMAELGVK--INIARVEMINALSSLIMEYVQKENFPHIK 225
           R   L E    +      +  ++ E+           ++I  ++ L      +E+     
Sbjct: 170 RLHRLNEDRAGAEMEREVLTRRVGEVDAVDPKPHEDDDLIAEIAGLQAAQSIRESLRKAD 229

Query: 226 LSLTGFLDGKFDQSFC-ALKEEYAKKL-----FDGRKMDSMSRRTLIGPHRSDLIVDYCD 279
             L G       Q    AL E+   +L      D +  +   R   +    +DL      
Sbjct: 230 ALLNGLETSTGPQPGALALLEQAVHELDATGDADPQAAELAERARQMSYDLTDLAASVAG 289

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
            A          Q++  +G  LA  + +          LL+  +A  D  +   L    T
Sbjct: 290 HAARAEAD---PQRLEELGGRLAAIQRLLRARTTTLDDLLETTAA--DRRRLTELDPAAT 344

Query: 340 DIGS 343
           D+GS
Sbjct: 345 DLGS 348


>gi|260892819|ref|YP_003238916.1| cobalt ABC transporter, ATPase subunit [Ammonifex degensii KC4]
 gi|260864960|gb|ACX52066.1| cobalt ABC transporter, ATPase subunit [Ammonifex degensii KC4]
          Length = 272

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 9/74 (12%)

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFR 336
           +  +       S G++K + +   LA             +LLLDE +A LD  +   L  
Sbjct: 127 FDQRHKPPHLLSYGQKKRLCLAAVLAL---------EPEVLLLDEPTAGLDPGQTKRLLH 177

Query: 337 IVTDIGSQIFMTGT 350
            ++ +     +  T
Sbjct: 178 FLSGLKGCTIVFST 191


>gi|224371530|ref|YP_002605694.1| hypothetical protein HRM2_44740 [Desulfobacterium autotrophicum
          HRM2]
 gi|223694247|gb|ACN17530.1| conserved hypothetical protein [Desulfobacterium autotrophicum
          HRM2]
          Length = 658

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K+K++ I  +R+   +R+  D+     VG N  GK++I+ A+  L
Sbjct: 1  MKLKWVYIKNYRSCKDVRINIDS-MQALVGANNAGKSSIIRALDLL 45


>gi|145608106|ref|XP_360835.2| hypothetical protein MGG_03378 [Magnaporthe oryzae 70-15]
 gi|145015607|gb|EDK00097.1| hypothetical protein MGG_03378 [Magnaporthe oryzae 70-15]
          Length = 1465

 Score = 42.6 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRR 58
            RI I +L ++ F++YA    +  F +  +  VG NG GK+N+++++ F+   R    R+
Sbjct: 194 PRIVITYLIMTNFKSYAGRQEVGPFHSSFSSVVGPNGSGKSNVIDSLLFVFGFRASKMRQ 253

Query: 59  ASYADVTRIGSPSFFSTFARV 79
              + +    +         V
Sbjct: 254 GKLSALIHNSAQYQNLDHCEV 274


>gi|331696149|ref|YP_004332388.1| sulfate-transporting ATPase [Pseudonocardia dioxanivorans CB1190]
 gi|326950838|gb|AEA24535.1| Sulfate-transporting ATPase [Pseudonocardia dioxanivorans CB1190]
          Length = 268

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 22/141 (15%)

Query: 239 SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIA---HGSTGEQKVV 295
           S    +E     L  G   D  + R        D++       +        S G++K V
Sbjct: 115 SPTVREEIAFGPLQLGLSRDETAGRV------DDVLHMLGIPDLADRAPFQLSGGQKKKV 168

Query: 296 LVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGT-DK 352
            +   L              +LL DE +A LD   R  L  ++  +G   +  +  T D 
Sbjct: 169 AIATVLVM---------SPEVLLFDEPTAALDPRTRYWLVELIERLGTAGRTIVHATHDL 219

Query: 353 SVFDSLNETAKFMRISNHQAL 373
            +   + +        +H+ +
Sbjct: 220 DLLHRIADRCVVFS-EDHRIV 239


>gi|282856106|ref|ZP_06265390.1| putative prophage Lp2 protein 4 [Pyramidobacter piscolens W5455]
 gi|282586033|gb|EFB91317.1| putative prophage Lp2 protein 4 [Pyramidobacter piscolens W5455]
          Length = 556

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          M   +    L+I +FR +      F    T   G NGVGK+NIL
Sbjct: 1  MPTSLH--KLHIKKFRIFEDKTFHFGKYVTAIAGQNGVGKSNIL 42


>gi|229168765|ref|ZP_04296485.1| ABC transporter, ATP-binding protein [Bacillus cereus AH621]
 gi|228614702|gb|EEK71807.1| ABC transporter, ATP-binding protein [Bacillus cereus AH621]
          Length = 209

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 2  QSLAFHPNVTFIIGENGTGKSTLLEAIAIALGFNAEGGTKNFR 44


>gi|209525077|ref|ZP_03273621.1| AAA ATPase [Arthrospira maxima CS-328]
 gi|209494486|gb|EDZ94797.1| AAA ATPase [Arthrospira maxima CS-328]
          Length = 449

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 16/141 (11%)

Query: 17  NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTF 76
           N+  + +  + + TI  G NG GKT IL+         G     Y+++  +   +F   F
Sbjct: 16  NHE-IPVNLNDRMTIIHGPNGFGKTVILK------LLNGLFNCQYSELINLPFETFKVEF 68

Query: 77  -----ARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDR 131
                  ++   G  D S  +     ++     ++   I  +DE++    + +L+P + R
Sbjct: 69  DDGNYLEIDKKTGRQDQSNTIRFNFSKNSETFILDKSQINDIDEIS-ISDLDYLIPELMR 127

Query: 132 IFSGLSMERRRFLDRMVFAID 152
           +        R      + +I 
Sbjct: 128 V---GPQRWRYLPTEEMLSIS 145


>gi|190402278|gb|ACE77687.1| DNA repair protein RAD50 (predicted) [Sorex araneus]
          Length = 513

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|74184416|dbj|BAE25735.1| unnamed protein product [Mus musculus]
          Length = 486

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIISFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|56479085|ref|YP_160674.1| chromosome segregation ATPase [Aromatoleum aromaticum EbN1]
 gi|56315128|emb|CAI09773.1| chromosome segregation ATPase [Aromatoleum aromaticum EbN1]
          Length = 1176

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 95/281 (33%), Gaps = 41/281 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTI-FVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           +++  L ++ F+ +     V    + +  VG NG GK+NI++A+   L   R    R  S
Sbjct: 1   MRLSKLKLAGFKTFVDPTTVLTPGNLVGVVGPNGCGKSNIIDAVRWVLGETRASALRGES 60

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDRSVRCL-QINDV 108
             DV   GS      S  S     +  EG A         I ++   DRS      +N+V
Sbjct: 61  MQDVIFNGSTTRKPVSRASVELVFDNAEGRAAGQWSRYAEISVKRVLDRSGESTYYLNNV 120

Query: 109 VIRVVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDRMVFAIDPRHRRRMI 160
            +R  D ++  L       +          RI      E R FL+             + 
Sbjct: 121 HVRRKDVIDLFLGTGLGPRAYAIIEQGMISRIIEARPEEVRGFLEE---------AAGVT 171

Query: 161 DFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKEN 220
            +    R     L++   + +    I  ++ E        R+  ++A +++   +     
Sbjct: 172 KYRERRRETEGRLSDARDNLARLDDIRMELGE--------RIGHLDAQAAIAARFRALSA 223

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMS 261
               +  L   L     +   A  +    +L    + DS  
Sbjct: 224 AHAERQQLLWLLKRNDARGEQARLQSKFNQLSAKMESDSAR 264


>gi|33594427|ref|NP_882071.1| putative chromosome partition protein [Bordetella pertussis
          Tohama I]
 gi|28375457|emb|CAD66592.1| SMC protein [Bordetella pertussis]
 gi|33564502|emb|CAE43817.1| putative chromosome partition protein [Bordetella pertussis
          Tohama I]
 gi|332383838|gb|AEE68685.1| putative chromosome partition protein [Bordetella pertussis CS]
          Length = 1175

 Score = 42.6 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAI-SFLSPGRG--FRRAS 60
          +++  L ++ F+++    ++    Q    VG NG GK+NI++A+   L   +    R  S
Sbjct: 1  MRLTQLKLAGFKSFVDPTVIPVPSQLVGVVGPNGCGKSNIIDAVRWVLGEAKASELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|291229744|ref|XP_002734833.1| PREDICTED: DNA repair protein RAD50-like [Saccoglossus
          kowalevskii]
          Length = 407

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 7  IKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +  L+I   R++         + F    T+ VG NG GKT ++E + + + G
Sbjct: 4  VDKLSIQGIRSFGPKEEDKQVIKFFTPLTLIVGQNGAGKTTVIECLKYATTG 55


>gi|210134408|ref|YP_002300847.1| hypothetical protein HPP12_0207 [Helicobacter pylori P12]
 gi|210132376|gb|ACJ07367.1| hypothetical protein HPP12_0207 [Helicobacter pylori P12]
          Length = 104

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 9/47 (19%)

Query: 10 LNISEFRNYA---------SLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          L +  FRN           +          I VG+N VGK+N+LEA+
Sbjct: 8  LKLHHFRNLGRKSPTELPLNSSFEKHGGLVILVGENNVGKSNVLEAL 54


>gi|197303034|ref|ZP_03168082.1| hypothetical protein RUMLAC_01761 [Ruminococcus lactaris ATCC
           29176]
 gi|197297889|gb|EDY32441.1| hypothetical protein RUMLAC_01761 [Ruminococcus lactaris ATCC
           29176]
          Length = 614

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           +   D    I   S G+++ V++   LA         G   +LLLDE + HLD++    L
Sbjct: 105 LGITDFDQKIEQLSGGQKRRVVLAKILA---------GHFDVLLLDEPTNHLDQEMITWL 155

Query: 335 FRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQ 371
              +      + M   D+   D +    + + +S+ +
Sbjct: 156 EEYLRSYRGTVLMVTHDRYFLDRVTN--RILELSHGK 190


>gi|195426264|ref|XP_002061260.1| GK20820 [Drosophila willistoni]
 gi|194157345|gb|EDW72246.1| GK20820 [Drosophila willistoni]
          Length = 1320

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 7  IKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ L+I   R++         + F +  T+ +G NG GKT I+E +     G
Sbjct: 4  IEKLSIQGIRSFGSNAEDRQEITFSSPVTLILGQNGCGKTTIIECLKHALTG 55



 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 82/224 (36%), Gaps = 30/224 (13%)

Query: 152  DPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSL 211
            +P+++  + ++ +     N  L               ++A     +     E +  ++ L
Sbjct: 1102 EPKYKESLKNYRKA----NFELHVTRRSIEDLGQ--HRLALEWA-LIQFHSEKMEKINRL 1154

Query: 212  IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRS 271
            I EY +             +     D      +++ +K + DG+  D+++ R     +R 
Sbjct: 1155 IREYWRMV-----------YRGNDIDYIEVKTEDDKSKGIEDGKNKDTLADRRKSYNYRV 1203

Query: 272  DLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR 331
             +     ++       S G++ +  + I +A A   S+      +L LDE + +LD    
Sbjct: 1204 -IQSKNNNEIEMRGRCSAGQRVLASLIIRMALAETFSSN---CAVLALDEPTTNLDRVNI 1259

Query: 332  NALFRIV--------TDIGSQIFMTGTDKSVFDSLNETAKFMRI 367
             +L   +        +     + +   D++   S+ + + + R+
Sbjct: 1260 ISLCDALNRIVDERESHANFMLIIITHDENFISSMGKLSTYHRV 1303


>gi|163814300|ref|ZP_02205689.1| hypothetical protein COPEUT_00451 [Coprococcus eutactus ATCC
          27759]
 gi|158449935|gb|EDP26930.1| hypothetical protein COPEUT_00451 [Coprococcus eutactus ATCC
          27759]
          Length = 502

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 11/56 (19%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQ-----------HTIFVGDNGVGKTNILEAISFL 50
          +I+   +  F++     +VF                   G NG GKT+ +EA++ L
Sbjct: 18 RIQKAVLDNFKSVEHGEIVFACGKKYVPYGTEADILGLYGQNGSGKTSFIEALAIL 73


>gi|330998406|ref|ZP_08322230.1| putative DNA sulfur modification protein DndD [Paraprevotella
          xylaniphila YIT 11841]
 gi|329568512|gb|EGG50317.1| putative DNA sulfur modification protein DndD [Paraprevotella
          xylaniphila YIT 11841]
          Length = 713

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDA---QHTIFVGDNGVGKTNILEAISFLSPGR 54
          + IK + +  +R Y    ++ F        +  G+NG GKT  L ++ +   G+
Sbjct: 1  MFIKSIILHNYRAYRGHNKVSFQPDSKNIFLIAGNNGFGKTTFLTSLVWCLYGK 54


>gi|219851651|ref|YP_002466083.1| ABC transporter related [Methanosphaerula palustris E1-9c]
 gi|219545910|gb|ACL16360.1| ABC transporter related [Methanosphaerula palustris E1-9c]
          Length = 232

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 13/88 (14%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GEQK + +   LA             +L+LDE  + LD  ++  + R + +  S+I +
Sbjct: 112 SRGEQKRLQLTCILAS---------DHDLLVLDEPLSSLDCMEKERVCRRLGERQSRITI 162

Query: 348 TGTDKS-VFDSLNETAKFMRISNHQALC 374
             T +   F  ++       I +HQ +C
Sbjct: 163 LFTHEQWTFPRVD---MIWEIRDHQLVC 187


>gi|212638258|ref|YP_002314778.1| cobalt ABC transporter ATPase [Anoxybacillus flavithermus WK1]
 gi|212559738|gb|ACJ32793.1| ABC-type cobalt transport system, ATPase component [Anoxybacillus
           flavithermus WK1]
          Length = 265

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE+++V +   LA             ILL+DE +A LD   R  L  ++  +     +
Sbjct: 161 SEGEKRLVTLATVLAM---------EPKILLMDEPTAALDPQARRTLIHLIQGLPHTKIV 211

Query: 348 TGTDKS 353
           T  D  
Sbjct: 212 TTHDLD 217


>gi|198432135|ref|XP_002120882.1| PREDICTED: similar to XCAP-C [Ciona intestinalis]
          Length = 1412

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 2   TNRIKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FR 57
             R+ I  +    F++YA  R+   F    T  +G NG GK+N+++++ F+   R    R
Sbjct: 68  DPRLIITHIVNYNFKSYAGKRVLGPFHKSFTAIIGPNGSGKSNVIDSMLFVFGYRANKIR 127

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLA 86
               + +         +T   VE      
Sbjct: 128 SKKLSVLIHDSENHKEATSCTVEVHFEKI 156


>gi|89901813|ref|YP_524284.1| putative GTP-binding protein [Rhodoferax ferrireducens T118]
 gi|89346550|gb|ABD70753.1| putative GTP-binding protein [Rhodoferax ferrireducens T118]
          Length = 880

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 5  IKIKFLNISEFRNYAS-LRLV-FDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
          +K++ L I  F+ +   L +  F     +F   N  GK+ + EAI      R  R  S  
Sbjct: 1  MKLRRLRIEHFKRFRDPLVINGFTDGLNLFAAPNESGKSTVAEAIRAAFFER-HRSGSVE 59

Query: 63 DVTRIGSPSF 72
           +   G  S 
Sbjct: 60 HLRPWGDSSA 69


>gi|49256867|gb|AAH73850.1| RAD50 protein [Homo sapiens]
 gi|80473913|gb|AAI08283.1| RAD50 protein [Homo sapiens]
          Length = 723

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|323464091|gb|ADX76244.1| conserved hypothetical protein [Staphylococcus pseudintermedius
           ED99]
          Length = 974

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 70/236 (29%), Gaps = 35/236 (14%)

Query: 151 IDPRHRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
              R+  R+  F  L                      + ++ +  +L  +I+      + 
Sbjct: 725 RYQRYHERLARFNDLTHFLDNQNYGYEKSSKLSEKTTAQLDEEYQKLSEQIDTYNERFLE 784

Query: 207 A------LSSLIMEYVQKENFPHIKLSL--------TGFLDGKFDQSFCALKEEYAKKLF 252
           +      L + +      +   H++               D        AL +E+ K++ 
Sbjct: 785 SQSEVSDLLAQMNHMETDDTLRHLRHQYQLLRNQLNESAEDWAALSYLEALVDEHIKQIK 844

Query: 253 DGR-----------KMDSMSR-RTLIGPHRSDLIVDYCDKAITIA-HGSTGEQKVVLVGI 299
           D R             D  S     +      ++V + D  +      S   ++++ + +
Sbjct: 845 DKRLPQVVNIATDIYNDLTSGQYVQVTYANEQVMVRHQDGQMYHPIELSQSTKELLYIAL 904

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKS 353
            L+    +        I  +D+   H D ++R  + + +  +    QI      + 
Sbjct: 905 RLSLIHTLKPYYSLPII--IDDAFVHFDAERRAQMMKYLRGMSEEYQILYFTCSRD 958


>gi|319790819|ref|YP_004152459.1| hypothetical protein Varpa_0126 [Variovorax paradoxus EPS]
 gi|315593282|gb|ADU34348.1| hypothetical protein Varpa_0126 [Variovorax paradoxus EPS]
          Length = 591

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 57/388 (14%), Positives = 111/388 (28%), Gaps = 47/388 (12%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDA--QHTIFVGDNGVGKTNILEAIS-FLSPGRG-- 55
           M   I +  + ++ +R   S  +      +   FVG N  GK+ +L  IS  LS      
Sbjct: 1   MPGSIFLHGIALANYRGIGSDIVRIGPFQRFNFFVGPNNSGKSTVLNFISQHLSTHVSSP 60

Query: 56  FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
            R +    V             +         + I L     R       N+        
Sbjct: 61  PRGSRNQPV-------SLRPLDKNTKTNEDVVMGIGLPMSKAREQLEHIFNEEPYDWHSH 113

Query: 116 LNKHLRISWLVPSMDRIFSGL-----------SMERRRFLDRMVFAIDPRHRRRMIDFER 164
           +N    +       + ++               + R   ++ +  A     +       R
Sbjct: 114 MNAIEYLLEFFQEENILWFQRGADPSKPLAPIPLNRLPSVEEITNASRVNIKGLWS---R 170

Query: 165 LMRGRNRL--LTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           L R       L  G   +   S I+  +      I   R   I+       ++  K    
Sbjct: 171 LTRQSGGGPNLWVGESINRLLSLIDISL-PAVALIPAIRQ--ISERGQDFSDWSGKGLIE 227

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
            +          +           + + +                  R  ++V   DK +
Sbjct: 228 ELARHQNPDYSERLKIEKFEAVNSFVRVVTANSSARIEIPYD-----RQHILVHMDDKVL 282

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD-I 341
            +    TG  +V+++    A   L+        I+ ++E   HL    +  L + + D  
Sbjct: 283 PLHALGTGIHEVIMLA---AFCTLLEQQ-----IVCIEEPEIHLHPLLQRRLVQYLADQT 334

Query: 342 GSQIFMTGTDKSVFDSLNETAKFMRISN 369
            +Q F+     S+ D+    A    +SN
Sbjct: 335 SNQYFVATHSASIIDATE--AAVFHVSN 360


>gi|325103095|ref|YP_004272749.1| DNA replication and repair protein RecN [Pedobacter saltans DSM
           12145]
 gi|324971943|gb|ADY50927.1| DNA replication and repair protein RecN [Pedobacter saltans DSM
           12145]
          Length = 554

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 88/273 (32%), Gaps = 29/273 (10%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           +  L I  +    SL + FD    I  G+ G GK+ IL A+  +    +  + F      
Sbjct: 2   LNRLYIKNYALIDSLDISFDKGLNILTGETGAGKSIILGALGLILGQRAESKYFFNQQKK 61

Query: 63  DVTRIGSPSFFST-------FARVEGMEGLADISIKLETRDDRSVRCLQINDVVIR--VV 113
            V       FF+        F     ++   +  ++ E   D   R   +ND  +   V+
Sbjct: 62  CVI----EGFFNIEGYQLNSFFEENDLDFEKETVLRREISLDGKSRAF-VNDTPVNLTVL 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRNR 171
            +L + L    +      +  G    +    D M    D    ++     +++     + 
Sbjct: 117 KQLGEQL--IDIHSQHATLEIGAQNFQLLVTDLMAANQDLLKVYKTNFKSYKKKQEKLDE 174

Query: 172 LLTEGYFDSSWCSSIEAQMAELG-VKINIARVEMIN-ALSSLIMEYVQKENFPHIKLSLT 229
           L+       +     + Q  EL    +     E +   L++L      K N  +    L 
Sbjct: 175 LIRSSEQAKADLDYFQFQFNELEQANLLENEQETLESELNTLTHAEEIKNNLTNAYAVLE 234

Query: 230 GFLDG-----KFDQSFCALKEEYAKKLFDGRKM 257
                     K   S   L E+Y  +L +  + 
Sbjct: 235 QSEINAVQLLKEASSQVQLLEKYQPELAELNER 267


>gi|301110030|ref|XP_002904095.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans
           T30-4]
 gi|262096221|gb|EEY54273.1| ATP-binding Cassette (ABC) Superfamily [Phytophthora infestans
           T30-4]
          Length = 379

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 19/108 (17%)

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
           L++    K   ++  S GEQK+VL+   LA             +L+LDEI+  LD   R 
Sbjct: 275 LVLPDAVKTRKLSQLSQGEQKLVLIARALAAC---------PQLLILDEITHGLDPFNRA 325

Query: 333 ALFRIVTDIG---SQ----IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
            + R++  IG   +Q    + +T  ++ +       +   +I + Q +
Sbjct: 326 HVLRVIETIGRHAAQLTHMVLITHHEEEITPCF---SNIFKIQDKQIV 370


>gi|260434539|ref|ZP_05788509.1| DNA repair protein RecN [Synechococcus sp. WH 8109]
 gi|260412413|gb|EEX05709.1| DNA repair protein RecN [Synechococcus sp. WH 8109]
          Length = 560

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 50/153 (32%), Gaps = 12/153 (7%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG-------RGFRRA 59
           +  L +       SL L F +  T+  G+ G GK+ +L+A+  +  G       R  R  
Sbjct: 2   LTGLLLQNIALIESLELEFSSGFTVLTGETGAGKSILLDALDAVLGGAQGSSGVRLLRTG 61

Query: 60  SYADVTR-----IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
           S             +   +   A  +  E L           DR     ++N   +    
Sbjct: 62  SDRARIEAAFQLNPALEQWLIAAEFDPEEELLISREWKRQEGDRYSSRCRLNGSTVNRQQ 121

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRM 147
            L     +  L           + ++R +LDR+
Sbjct: 122 LLELRPLLIDLTVQGQTQLLSRAGQQRLWLDRL 154


>gi|110596734|ref|ZP_01385024.1| SMC protein-like [Chlorobium ferrooxidans DSM 13031]
 gi|110341421|gb|EAT59881.1| SMC protein-like [Chlorobium ferrooxidans DSM 13031]
          Length = 843

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 19  ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA-SYADVTRIGSPSFFSTFA 77
            SL   F  + TI  G NG GK+++ EA+  L+     RR      VT   SPSF   FA
Sbjct: 92  DSLVASFPKRVTIIFGSNGSGKSSLCEALQILASNDAPRRPLHDVRVTTTTSPSFAYKFA 151



 Score = 36.0 bits (82), Expect = 10.0,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 167 RGRNRLLTEGYFDSSWCSSI--EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHI 224
           + R  LL +    S+ C  +    ++A+    +  AR       + +   +V     P  
Sbjct: 498 KDREELLKQLEQLSTECKGLLYAKEIADNIELLTDAR-----KWTEIAAFWVA--TLPDF 550

Query: 225 KLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL-------IVDY 277
           K  L              + E++  +L +     +    +  G    D+       +  +
Sbjct: 551 KSVLRKVTSTAKKAHKELVVEDFKTRLNEEYLALAEKDMSAFGVELKDVGGDGAVTVDHH 610

Query: 278 CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
                  +  S GE ++  + +F A        T    +++ D+  +  D +        
Sbjct: 611 VAGQRIESVLSEGELRIHALALFFAELE-----TCEQQVIVFDDPISSFDYNYIGNYCNR 665

Query: 338 VTDI-----GSQIFM 347
           + D+       QI +
Sbjct: 666 LRDLIQAHSNRQIIV 680


>gi|327482042|gb|AEA85352.1| DNA repair protein RecN [Pseudomonas stutzeri DSM 4166]
          Length = 557

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 59/207 (28%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +     L L      ++  G+ G GK+ +L+A+      R     + + V R
Sbjct: 2   LVHLSVHNYAIVEHLDLELKRGMSVISGETGAGKSIMLDALGLTLGDR-----ADSSVVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
           IG+                  A +   +  ++    L        R    IN       D
Sbjct: 57  IGADKADILASFDLDDIPDARAWLAERDMDSEGPCILRRVITAEGRSRGYINGTPCPQGD 116

Query: 115 --ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
              L + L           +    +   RR LD    + D         +R     + + 
Sbjct: 117 LKALGELLIDIHSQHEHQSLLK--TDTHRRLLDEYSGSQDLARQVQLAAQRWRQTRQTLE 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
             +    E        S    ++  L 
Sbjct: 175 RLSNSSDEQRARHQLLSYQLEELENLA 201


>gi|319892876|ref|YP_004149751.1| DNA double-strand break repair rad50 ATPase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162572|gb|ADV06115.1| DNA double-strand break repair rad50 ATPase [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 974

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 70/236 (29%), Gaps = 35/236 (14%)

Query: 151 IDPRHRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN 206
              R+  R+  F  L                      + ++ +  +L  +I+      + 
Sbjct: 725 RYQRYHERLARFNDLTHFLDNQNYGYEKSSKLSEKTTAQLDEEYQKLSEQIDTYNERFLE 784

Query: 207 A------LSSLIMEYVQKENFPHIKLSL--------TGFLDGKFDQSFCALKEEYAKKLF 252
           +      L + +      +   H++               D        AL +E+ K++ 
Sbjct: 785 SQSEVSDLLAQMNHMETDDTLRHLRHQYQLLRNQLNESAEDWAALSYLEALVDEHIKQIK 844

Query: 253 DGR-----------KMDSMSR-RTLIGPHRSDLIVDYCDKAITIA-HGSTGEQKVVLVGI 299
           D R             D  S     +      ++V + D  +      S   ++++ + +
Sbjct: 845 DKRLPQVVNIATDIYNDLTSGQYVQVTYANEQVMVRHQDGQMYHPIELSQSTKELLYIAL 904

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKS 353
            L+    +        I  +D+   H D ++R  + + +  +    QI      + 
Sbjct: 905 RLSLIHTLKPYYSLPII--IDDAFVHFDAERRAQMMKYLRGMSEEYQILYFTCSRD 958


>gi|313678161|ref|YP_004055901.1| ABC transporter ATP-binding protein [Mycoplasma bovis PG45]
 gi|312950442|gb|ADR25037.1| ABC transporter, ATP-binding protein [Mycoplasma bovis PG45]
          Length = 295

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
               D   + A  S+G++K +++         I        IL+LDE +A+LD   R  L
Sbjct: 117 FHVPDMTKSPAFMSSGQKKSIML---------IQALINDPEILILDEPAANLDPSSRIKL 167

Query: 335 FRIVTDI---GSQIFMTGTDKSVFDSLNE 360
           F  +  +   G  I ++     + D L +
Sbjct: 168 FNTLKQLHLEGKTILISS---HILDELEK 193


>gi|291543777|emb|CBL16886.1| hypothetical protein RUM_06770 [Ruminococcus sp. 18P13]
          Length = 660

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 5  IKIKFLNISEFRNYA-----SLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + IK L +  FR +      S  +      T+ +GDN  GKT +L+A ++   G
Sbjct: 1  MLIKTLRMENFRQFKGTTNVSFSVDPKQNVTVILGDNTFGKTTLLQAFNWCFYG 54


>gi|126290113|ref|XP_001366194.1| PREDICTED: similar to Rad50 [Monodelphis domestica]
          Length = 1312

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          KI+ ++I   R++         + F    TI VG NG GKT I+E + ++S G
Sbjct: 3  KIEKMSIMGVRSFGIEDKDKQVITFFNPLTILVGPNGAGKTTIIECLKYISTG 55


>gi|329766425|ref|ZP_08257969.1| hypothetical protein Nlim_1775 [Candidatus Nitrosoarchaeum limnia
           SFB1]
 gi|329137024|gb|EGG41316.1| hypothetical protein Nlim_1775 [Candidatus Nitrosoarchaeum limnia
           SFB1]
          Length = 697

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 44/188 (23%)

Query: 5   IKIKFLNISEFRN-YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           ++++   +  +R  + S  +        FVG N  GKT IL+A++ L+  R  R +   D
Sbjct: 1   MRLRKFRVRAYRCIHDSGEITVGD-LAAFVGRNESGKTTILQALTLLN--RDERVS-DLD 56

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETR------DDRSVRCLQINDVV-------- 109
           +    S         VEG   L+   I+L  +      + + ++  + N           
Sbjct: 57  LCDELSEELKGEIRIVEGEFELSSNEIQLLKQLFPGLPEIKKIKLFRTNKRPKVQYEFED 116

Query: 110 ---------------------IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV 148
                                +  +D +  HLRI        R+F G   + +   D  +
Sbjct: 117 IQISEERNRELNSWENFSKQILNFLDTIPNHLRIQI----DTRLFEGPPPKNQEMFDSGM 172

Query: 149 FAIDPRHR 156
                +  
Sbjct: 173 AEFSNQFH 180


>gi|312976775|ref|ZP_07788524.1| putative exonuclease [Lactobacillus crispatus CTV-05]
 gi|310896103|gb|EFQ45168.1| putative exonuclease [Lactobacillus crispatus CTV-05]
          Length = 307

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 4  RIKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          R+++K L I  F+++    ++ F  + T F+G NG GKT  L A++ L
Sbjct: 5  RLRLKTLLIKGFKSFNEETKIDFS-KETAFIGTNGSGKTACLLALNKL 51


>gi|253743852|gb|EET00143.1| RAD50 DNA repair protein, putative [Giardia intestinalis ATCC
          50581]
          Length = 1383

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 7  IKFLNISEFRNYAS--LRLVFDAQHTIFVGDNGVGKT 41
          +  L +   R+Y      ++F    TI  G NG GK+
Sbjct: 4  LDQLTLKNVRSYKDRPSTIMFSPNLTIITGHNGAGKS 40



 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 11/90 (12%)

Query: 281  AITIAH---GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
             +  +     S+G+Q ++ + + LA       +      ++LDE + +LD++    L  +
Sbjct: 1265 PVARSFRETCSSGQQVLLSILLRLA---FSYISMSPFSFIVLDEPTNYLDKENNKNLAHV 1321

Query: 338  VTDI-----GSQIFMTGTDKSVFDSLNETA 362
            + D        Q+ +        DSL   A
Sbjct: 1322 LADFISNEQNIQVVIITHSLEFCDSLIAAA 1351


>gi|305681337|ref|ZP_07404144.1| DNA repair protein RecN [Corynebacterium matruchotii ATCC 14266]
 gi|305659542|gb|EFM49042.1| DNA repair protein RecN [Corynebacterium matruchotii ATCC 14266]
          Length = 570

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 69/216 (31%), Gaps = 25/216 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I I+ L +      +   +      T+  G+ G GKT ++  +  L  GR     +
Sbjct: 1   MLADIAIENLGV-----ISRAAMELSPGLTVLTGETGAGKTMVVTGLRLLVGGR-----A 50

Query: 61  YADVTRIG-SPSFFSTFARVEGMEGL-----ADISIKLETRDDRSVRCLQINDVVI--RV 112
            A   R G + +       ++G++        D+ +    R D     +    V +  R 
Sbjct: 51  DASRVRSGAAQAAVEGRFVLDGVDSEVAGAARDVVVSAGGRLDEGGEVIVSRTVSVGGRS 110

Query: 113 VDELNKHL----RISWLVPSMDRIFSGLSMERRRFLDRMVFAI---DPRHRRRMIDFERL 165
              L   L     +      +  I       R    +  + A+   DP+    ++ +   
Sbjct: 111 KAHLGGRLVPAAALQEFSAELLTIHGQNDQLRLLAPEEQLAAVDRCDPKIAELLVGYREA 170

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
                RL+ +    +     +  +   L   I+  R
Sbjct: 171 FGRWRRLVRDLRSRTESRRELAQEADRLQFAISEIR 206


>gi|94266065|ref|ZP_01289784.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
 gi|93453387|gb|EAT03815.1| conserved hypothetical protein [delta proteobacterium MLMS-1]
          Length = 421

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--------FRR 58
          I  +    FR    +R        + VG N  GKT  L+ ++FL              R 
Sbjct: 2  ITLVETKNFRCLRYIRQPLG-MFHVLVGPNASGKTTFLDVVAFLGSLVSEGLDTAVGERT 60

Query: 59 ASYADVTRIGSPSFFSTFARVEGMEGLADI 88
           ++ D+    S + F         +   ++
Sbjct: 61 KNFQDLLWQRSGNGFELAIEATIPQERQNL 90


>gi|119356942|ref|YP_911586.1| ABC transporter related [Chlorobium phaeobacteroides DSM 266]
 gi|119354291|gb|ABL65162.1| ABC transporter related protein [Chlorobium phaeobacteroides DSM
           266]
          Length = 427

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 9/55 (16%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           S GEQ+ V + + LA             I++LDE  +HLD + R  + +I+ +I 
Sbjct: 143 SGGEQQRVALAMVLAQ---------EPGIIMLDESISHLDINHRQEVLQILMNIN 188


>gi|317181515|dbj|BAJ59299.1| hypothetical protein HPF57_0225 [Helicobacter pylori F57]
          Length = 83

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 9/47 (19%)

Query: 10 LNISEFRNYA---------SLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          L + +FRN           +          I VG+N VGK+NILEA+
Sbjct: 8  LKLHQFRNLGKNLPTELLLNSSFEKHGGLVILVGENNVGKSNILEAL 54


>gi|38511824|gb|AAH62603.1| RAD50 protein [Homo sapiens]
          Length = 557

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|322383931|ref|ZP_08057661.1| ABC transporter-like protein [Paenibacillus larvae subsp. larvae
          B-3650]
 gi|321151408|gb|EFX44595.1| ABC transporter-like protein [Paenibacillus larvae subsp. larvae
          B-3650]
          Length = 239

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 16 RNYASLRLVFDAQH-TIFVGDNGVGKTNILEAI 47
          +N   L + F      + +G NG GKT + + I
Sbjct: 21 KNLDRLNVDFHPGIINVLIGKNGSGKTTLFDLI 53


>gi|308487890|ref|XP_003106140.1| CRE-SMC-4 protein [Caenorhabditis remanei]
 gi|308254714|gb|EFO98666.1| CRE-SMC-4 protein [Caenorhabditis remanei]
          Length = 1072

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 3   NRIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RR 58
           +R+ I  + ++ F++Y   +    F    T  +G NG GK+N+++++ F+   R    R 
Sbjct: 95  DRLMILNVEVNNFKSYYGKASIGPFHKSFTSIIGPNGSGKSNLIDSLLFVFGFRASKIRS 154

Query: 59  ASYADVTR 66
           A  A++  
Sbjct: 155 AKVANLIH 162


>gi|289548324|ref|YP_003473312.1| SMC domain protein [Thermocrinis albus DSM 14484]
 gi|289181941|gb|ADC89185.1| SMC domain protein [Thermocrinis albus DSM 14484]
          Length = 953

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDAQHTIFV--GDNGVGKTNILEAISFLSPGRGFR---R 58
          ++   L +  FR +     + F      FV  G  G GK++I++AI +   GR  R   +
Sbjct: 1  MRPIRLKLKNFRIFRGEHEVDFSC-LNFFVIQGRTGSGKSSIVDAICYALYGRVPREGSK 59

Query: 59 ASYADVTRIGS 69
           ++ +V   G 
Sbjct: 60 PAHRNVISRGE 70


>gi|295443032|ref|XP_001713090.2| DNA repair protein Rad50 [Schizosaccharomyces pombe 972h-]
 gi|259016326|sp|Q9UTJ8|RAD50_SCHPO RecName: Full=DNA repair protein rad50
 gi|254745547|emb|CAB96041.3| DNA repair protein Rad50 [Schizosaccharomyces pombe]
          Length = 1285

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +R+ I  + I  F N +   + F +  T+ VG NG GKT I+E + + + G
Sbjct: 5  DRMSI--MGIRSFDNRSRESIQFFSPLTLIVGQNGSGKTTIIECLKYATTG 53


>gi|257791360|ref|YP_003181966.1| ABC transporter-like protein [Eggerthella lenta DSM 2243]
 gi|257475257|gb|ACV55577.1| ABC transporter related [Eggerthella lenta DSM 2243]
          Length = 504

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 11/88 (12%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE+K + +   LA             +L LDE + HLD   R  + + ++       +
Sbjct: 112 SHGERKRIQIACALAA---------EPQVLALDEPTNHLDAPTRALVAQALSSFKGVGLL 162

Query: 348 TGTDKSVFDSLNETAKFMRISNHQALCI 375
              D+++ D L  +  F  I   +AL I
Sbjct: 163 VSHDRALLDKLVRSCVF--IEAGRALAI 188


>gi|203284730|ref|YP_002222470.1| exonuclease SbcC [Borrelia duttonii Ly]
 gi|201084173|gb|ACH93764.1| exonuclease SbcC [Borrelia duttonii Ly]
          Length = 951

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 11/111 (9%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFD------AQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           ++I  L      +Y     + FD      +   +  G+ G GK+ IL+ I+     R +R
Sbjct: 1   MRINKLIFKNIASYKGEYEINFDVSVLRRSGIFLISGNTGAGKSTILDCITLALYARVYR 60

Query: 58  RASYADVTRIGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQIN 106
                +++   S  F S + R+     E   +  I+L  +   + R + +N
Sbjct: 61  --LDKNISDFISKGFDSAYVRLTFTVSEKRYESFIELHIKQKETPRSMVLN 109


>gi|170649702|gb|ACB21284.1| DNA repair protein RAD50 (predicted) [Callicebus moloch]
          Length = 1102

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|167462854|ref|ZP_02327943.1| ABC-type cobalt transport system, ATPase component [Paenibacillus
          larvae subsp. larvae BRL-230010]
          Length = 235

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 16 RNYASLRLVFDAQH-TIFVGDNGVGKTNILEAI 47
          +N   L + F      + +G NG GKT + + I
Sbjct: 17 KNLDRLNVDFHPGIINVLIGKNGSGKTTLFDLI 49


>gi|297562024|ref|YP_003680998.1| hypothetical protein Ndas_3083 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846472|gb|ADH68492.1| conserved hypothetical protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 796

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 44/150 (29%), Gaps = 17/150 (11%)

Query: 7   IKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +  + ++ FR     A L L      T+  G NG GK++  E I     G   R  +   
Sbjct: 52  LSSVKVTGFRGIGGEAELNLPPGPGLTMVFGANGSGKSSFAEGIEAAVTGDNARWHTAKS 111

Query: 64  VTRIGS---------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD 114
               GS               F+  +G                 S   +   D   R ++
Sbjct: 112 NVWSGSWRNVHTSKPSRIDVEFSTADGGGSHTLTRTWHGQNASDSSAKVSAPDGAQRPLE 171

Query: 115 ELNKHLRISWLVP-----SMDRIFSGLSME 139
           EL     +    P      +   F+G   E
Sbjct: 172 ELGWKRALQLYRPFLPYAELGTAFTGARSE 201



 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 66/208 (31%), Gaps = 20/208 (9%)

Query: 176 GYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLDG 234
              DS+W         +L   +   R E +     ++ E    +E        L      
Sbjct: 458 AEADSAWLRVA----GDLAAWVT--RAEEVERARPVVREAKKAREWLKSAHGDLRSARLA 511

Query: 235 KFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG--STGEQ 292
            F     A+  E  ++         +           D+ V   D     A G  S GE 
Sbjct: 512 PFADRTQAIWGELRQESSVSLNSIELMGTNTTRHLALDVSV---DDKAAQALGVMSQGEL 568

Query: 293 KVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGT 350
             + + +FL  A    +       ++LD+    +D DK     R++ D  +  Q+ +   
Sbjct: 569 NSLALALFLPRA---CSEESPYRFIVLDDPVQSMDADKVAGFARVLQDYAASRQVIVFTH 625

Query: 351 DKSVFDS---LNETAKFMRISNHQALCI 375
           D  + D+   L   A  M +    +  +
Sbjct: 626 DMRLVDAVRWLRIPATVMNVDRGSSSQV 653


>gi|302423046|ref|XP_003009353.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261352499|gb|EEY14927.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 1154

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 15/100 (15%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
          +++  + I  F++YA   +   +D       G NG GK+NIL+AI F   ++     R  
Sbjct: 1  MRVIEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDAICFVLGITNMTTVRAQ 60

Query: 60 SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRS 99
          +  D+           + R +     A ++I  + RD + 
Sbjct: 61 NLQDLI----------YKRGQAGVTKASVTIVFDNRDKKK 90


>gi|222110863|ref|YP_002553127.1| chromosome segregation protein smc [Acidovorax ebreus TPSY]
 gi|221730307|gb|ACM33127.1| chromosome segregation protein SMC [Acidovorax ebreus TPSY]
          Length = 1174

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 5  IKIKFLNISEFRNYAS-LRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + ++ F+++A     +   Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1  MRLNSIKLAGFKSFAEPTNFMLPGQLVGVVGPNGCGKSNIMDAVRWVLGESKASELRGES 60

Query: 61 YADVTRIGSPS 71
            DV   G+ S
Sbjct: 61 MQDVIFNGTTS 71


>gi|188587613|ref|YP_001919931.1| hypothetical protein CLH_0533 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188497894|gb|ACD51030.1| conserved hypothetical protein [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 790

 Score = 42.2 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 85/214 (39%), Gaps = 23/214 (10%)

Query: 159 MIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQK 218
           ++  E+ ++  + L+ + Y      S IE ++  +  KI+  + E   AL   +     +
Sbjct: 596 LLKIEKEIKDLDHLIEKRYLGKRVISEIEEELYSVEEKISKYKKEF-KALE--LASLKLQ 652

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
           E+F  ++ ++   L+ +    F  L  E+ + +      +   R         +L+ D  
Sbjct: 653 ESFKELRTNVGPKLNKEVLNKFNFLTNEFYRDVKISEDYELKIR-------NDNLLFD-- 703

Query: 279 DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
                    S G +  + + + L+   ++         L LD+     D+ +R    +++
Sbjct: 704 -----SEILSNGAKDQLYLALRLSFINMLFE--NEKVPLFLDDSFIQYDDKRRERALKLL 756

Query: 339 --TDIGSQIFMT--GTDKSVFDSLNETAKFMRIS 368
                G  IF T    +K++ D++N     +++S
Sbjct: 757 IKEGFGQIIFFTCQTIEKNILDNMNTDYNLIQLS 790


>gi|300858385|ref|YP_003783368.1| DNA repair protein [Corynebacterium pseudotuberculosis FRC41]
 gi|300685839|gb|ADK28761.1| DNA repair protein [Corynebacterium pseudotuberculosis FRC41]
 gi|302206099|gb|ADL10441.1| DNA repair protein [Corynebacterium pseudotuberculosis C231]
 gi|302330652|gb|ADL20846.1| DNA repair protein [Corynebacterium pseudotuberculosis 1002]
 gi|308276336|gb|ADO26235.1| DNA repair protein [Corynebacterium pseudotuberculosis I19]
          Length = 582

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 80/276 (28%), Gaps = 42/276 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  + I          L      T+  G+ G GKT ++  +  L+ GR     + A   R
Sbjct: 2   LADIAIENLGAIPHASLELSGGLTVLTGETGAGKTMVVTGLRLLTGGR-----ADAQRVR 56

Query: 67  IGSPSFFSTFARV----------EGMEGLADISIKLETRD-----------DRSVRCLQI 105
            G+         V           G E +  +   L+               RS   L  
Sbjct: 57  SGADRAAVEGRFVLDGVSGTIAEHGREIVDSVGGILDENGEVIASRTVSAQGRSKAYLGG 116

Query: 106 NDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR----------MVFAIDPRH 155
             V    + + +  L          R+ +  S  +R  LDR                   
Sbjct: 117 RAVPAASLSDFSAELLTIHGQNDQLRLLN--SDRQRDALDRFDPAIAPLAEECAHAFKNW 174

Query: 156 RRRMIDFERLMRGRNRLLT---EGYFDSSWCSSIEAQ-MAELGVKINIARVEMINALSSL 211
           R+   D++  ++ R  L        F     S I+ Q   +  ++  I R++ ++ L   
Sbjct: 175 RKLDRDYQGRLKSRMELAQEVDRLEFAIKEISDIDPQPGEDAAIQSLIRRLQDVDELREQ 234

Query: 212 IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEY 247
               +   +         G+       +   + + +
Sbjct: 235 AATALGAIDGAEALSEFGGYEGSDAVAASDLVGQAF 270


>gi|284030208|ref|YP_003380139.1| ATPase, RecF-like protein [Kribbella flavida DSM 17836]
 gi|283809501|gb|ADB31340.1| ATPase, RecF-like protein [Kribbella flavida DSM 17836]
          Length = 391

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L +  +R+   + +    +  +  G NG GK+++   +  L+     R  + A + R
Sbjct: 2  LRTLAVESYRSLRRVVMPLG-RLNVVTGANGSGKSSLYRGLRLLADAS--RNGAVAALAR 58

Query: 67 IG 68
           G
Sbjct: 59 EG 60


>gi|238913770|ref|ZP_04657607.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 271

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 18/91 (19%)

Query: 288 STGEQKVVLVG--IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ- 344
           S G++K V +   + L  AR +          LLDE +A LD   R  +  I+  I +Q 
Sbjct: 138 SHGQKKRVAIAGALVL-QARYL----------LLDEPTAGLDPAGRTQMLAIIRRIVAQG 186

Query: 345 --IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             + ++  D  +   +++    +     Q L
Sbjct: 187 NHVIISSHDIDLIYEISDAVYVLH--QGQVL 215


>gi|269839142|ref|YP_003323834.1| ABC transporter [Thermobaculum terrenum ATCC BAA-798]
 gi|269790872|gb|ACZ43012.1| ABC transporter related protein [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 571

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 19/121 (15%)

Query: 16  RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG------------FRRASYAD 63
           R    + L  DA     +G NG GKT +++ ++ L                  R A  A 
Sbjct: 320 RALEDVSLEMDAGCVCILGQNGSGKTTLMKHLNGLLKPSSGRVLVRGEDTRDHRVAHLAR 379

Query: 64  VT----RIGSPSFFSTFARVEGMEGLADISI---KLETRDDRSVRCLQINDVVIRVVDEL 116
                 +      F +    E   G  ++     + E   +R++  LQ+ DV  R   +L
Sbjct: 380 HVALAFQNPDDQLFRSSVEREVRFGAENMGFPPEEAEKLVERALDLLQLRDVRHRKPYDL 439

Query: 117 N 117
            
Sbjct: 440 G 440


>gi|297620142|ref|YP_003708247.1| cobalt ABC transporter ATPase subunit [Methanococcus voltae A3]
 gi|297379119|gb|ADI37274.1| cobalt ABC transporter, ATPase subunit [Methanococcus voltae A3]
          Length = 284

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 28/132 (21%)

Query: 257 MDSMSRRTLIGPHRSDLIVD------------YCDKAITIAHGSTGEQKVVLVGIFLAHA 304
            D       +G +  ++               Y +K     H S G++K V +   LA  
Sbjct: 100 QDIAFGPMNLGLNHDEVAKRVKESLKAVDMEGYDEKPP--HHLSGGQKKRVAIAGILAM- 156

Query: 305 RLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMTGTDKSVFDSLNET 361
                      I++LDE +A LD    + + R++ D+  Q   I ++  D  +       
Sbjct: 157 --------KPEIIVLDEPTAGLDPLGASQIMRLLYDLNKQGITIIISTHDVDLVPVYAN- 207

Query: 362 AKFMRISNHQAL 373
            K   ISN + +
Sbjct: 208 -KVYLISNGKII 218


>gi|157164868|ref|YP_001465997.1| endonuclease III [Campylobacter concisus 13826]
 gi|112801806|gb|EAT99150.1| SMC domain protein [Campylobacter concisus 13826]
          Length = 357

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 5  IKIKFLNISEFRNYASL-RLVFDAQHTIFVGDNGVGKTNIL 44
          +KI+ + I  +++  SL          I +G NGVGK+N +
Sbjct: 1  MKIEKITIEGYKSIKSLRDFEL-KNINILIGANGVGKSNFI 40


>gi|71983209|gb|AAZ57432.1| structural maintenance of chromosome 4 [Toxoplasma gondii]
          Length = 1479

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 4   RIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
           R+ I+ + +  F++Y        F  + T  VG NG GK+N+++A+ F
Sbjct: 151 RLMIERVVLENFKSYGKKKTIGPFHKRFTAIVGPNGSGKSNVIDAMLF 198


>gi|81428239|ref|YP_395239.1| hypothetical protein LSA0624 [Lactobacillus sakei subsp. sakei 23K]
 gi|78609881|emb|CAI54928.1| Hypothetical protein LCA_0624 [Lactobacillus sakei subsp. sakei
           23K]
          Length = 903

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 70/177 (39%), Gaps = 14/177 (7%)

Query: 181 SWCSSIEAQMAELGVKINIARVEMINA--LSSLIMEYVQKE-NFPHIKLSLTGFLDGKFD 237
           +    ++ ++ +        + ++     +  L  +++ K+     I+ +LT     +F 
Sbjct: 713 AELQVVQQKLVDSDAYQRQKQAQLNAEADIIGLAQDWLAKQLAIDWIQATLTAASQERFP 772

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
           +   A   +Y   L   R ++       +   R D ++        +   S G  + + +
Sbjct: 773 R-LLAKATQYFAILTQNRYIEITFEAATLTVLRQDQVLF------EVGELSQGTAEQLYI 825

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDK 352
            +  A A  I++    +  LL+D+   + D+ ++ A+++++ ++    Q+     + 
Sbjct: 826 ALRFAFAEEITDV--VSLPLLVDDGFVNFDDQRQAAVWQLLQNLSGAHQVIYLTANP 880


>gi|50554987|ref|XP_504902.1| YALI0F02365p [Yarrowia lipolytica]
 gi|49650772|emb|CAG77704.1| YALI0F02365p [Yarrowia lipolytica]
          Length = 1099

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          I+ +    F  + +L++      T   G NG GK+ IL A+
Sbjct: 35 IRSVECINFMCHENLKIDVGPGITFVSGQNGHGKSAILNAL 75


>gi|312197514|ref|YP_004017575.1| AAA ATPase [Frankia sp. EuI1c]
 gi|311228850|gb|ADP81705.1| AAA ATPase [Frankia sp. EuI1c]
          Length = 251

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 73/239 (30%), Gaps = 31/239 (12%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTFARVEGM 82
           L   A  T  VG+NG GK+ ++EA++  +       +         + S       +   
Sbjct: 38  LRLGAGVTFLVGENGTGKSTLVEALAVAAGFNPEGGSQNFRFATRATESPLGDHLVLSWE 97

Query: 83  EGLADIS--IKLETRDDRSVRCLQIN-DVVIRVVDELNKHLRISWLVPSMDRIFSGLSME 139
                    ++ E+  + +    +++ D   R++D                        E
Sbjct: 98  ARKPRTGFFLRAESYYNVASEIERLDSDGPTRLLDSYGGV----------------SPHE 141

Query: 140 R---RRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVK 196
           R     FLD       P     + + E  +  R  +     F         A +A  G +
Sbjct: 142 RSHGESFLDLATHRFGPDGLYILDEPEAALSVRGAMALLARF---------ADLAAAGCQ 192

Query: 197 INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
           + +A    +         Y    +     +     L  +  + F A  + Y + L DGR
Sbjct: 193 LIVATHSPVLLALPGATIYEIDADGAIGPVGYDDALPVRMTRDFLAAPDRYLRHLLDGR 251


>gi|288941587|ref|YP_003443827.1| AAA ATPase [Allochromatium vinosum DSM 180]
 gi|288896959|gb|ADC62795.1| AAA ATPase [Allochromatium vinosum DSM 180]
          Length = 594

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 58/357 (16%), Positives = 109/357 (30%), Gaps = 39/357 (10%)

Query: 6   KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
           ++  + I  FR    + L  ++ +T  VG N  GK++IL+A+S++      + A+ +   
Sbjct: 3   RLSHIRIKNFRACKDVSLPLES-YTPLVGQNNTGKSSILQALSWV-----LKPAALSVKD 56

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
                      A ++G+       I  E +  +++     +  +           +    
Sbjct: 57  FHDPGQMVEVIACIDGITNEVLGRIP-EEKHRKAITPYCRDGRLWIRASATGAITKKLI- 114

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGR-NRLLTEGYFDSSW 182
                          +   D      D  P H     D+   +    + LL E     + 
Sbjct: 115 ---------------KEVWDVEQCQEDGEPGH---WRDYPTGLPQAVSALLPEPLLVQAM 156

Query: 183 CSSIEAQM-AELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFC 241
               E    A+ G  I     E++  L     E     +     L+  G       Q F 
Sbjct: 157 HDIGEDLGKAKAGTTIKSLLDEIMGPLLEAHAELNTALDTIRNVLTAEGDHRSDHLQQFD 216

Query: 242 ALKEEYAKKLFDGRKMDSMSRRTLIG--PHRSDLIVDYCDKAITIAHGST--GEQKVVLV 297
           A      +  F G  +D   +   +       DL V                G Q+ + +
Sbjct: 217 ADASGALEHFFPGLSLDLDLQVVDVKEFFKAGDLHVTDKTTGDRRRFDQMGAGAQRAIQM 276

Query: 298 GIF--LAHARLISNTTGFAPILLLDEISAHLDEDKRNAL---FRIVTDIGSQIFMTG 349
            +   LA  R     +    +LL+DE   +L       L      +   G Q+  + 
Sbjct: 277 ALIRYLAGMRRGEGGSPSRRLLLIDEPELYLHPQGVRRLRQALASLAQTGFQVVFST 333


>gi|217970594|ref|YP_002355828.1| chromosome segregation protein SMC [Thauera sp. MZ1T]
 gi|217507921|gb|ACK54932.1| chromosome segregation protein SMC [Thauera sp. MZ1T]
          Length = 1234

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 121/383 (31%), Gaps = 57/383 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQHTI-FVGDNGVGKTNILEAI-SFLSPGR--GFRRAS 60
           +++  L ++ F+ +     V    + +  VG NG GK+NI++A+   L   R    R  S
Sbjct: 27  VRLSKLKLAGFKTFVDPTTVLTPGNLVGVVGPNGCGKSNIIDAVRWVLGETRASALRGES 86

Query: 61  YADVTRIGSP-----SFFSTFARVEGMEGLADI------SIKLETRDDRSVRCL-QINDV 108
             DV   GS      S  S     +  EG A         I ++   DRS      IN+V
Sbjct: 87  MQDVIFNGSTTRKPVSRASVELVFDNAEGRAAGQWSRYAEISVKRVLDRSGESTYYINNV 146

Query: 109 VIRVVDELNKHLRISWLVPSM--------DRIFSGLSMERRRFLDRMVFAID-------- 152
            +R  D ++  L       +          RI      E R FL+               
Sbjct: 147 HVRRKDVIDLFLGTGLGPRAYAIIEQGMISRIIEARPEEIRGFLEEAAGVTKYRERRKET 206

Query: 153 -------PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE-----LGVKINIA 200
                    +  R+ D    +  R   L      ++    ++A   E       VK N A
Sbjct: 207 EGRLRDARDNLARLDDIRMELGERIVHLEAQAAVAARYRELDAAHVEKQQLLWLVKRNEA 266

Query: 201 RVEMINALSSLIMEYVQKENFPHIKL-----SLTGFLDGKFDQSFCALKEEYAKKLFDGR 255
           R E    +++ + E   +      +L     S+    D  F+ S      +         
Sbjct: 267 RAEQ-ARVAASLNEASSRIEADSARLQELETSVESRRDAHFEASEAVHVAQNDLFAASAE 325

Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF-----LAHARLISNT 310
                +    +G  R  L        +   H S+  ++  L         LA    +   
Sbjct: 326 VARLETELQHLGEARRRLEARLAQLELDRGHWSS--RRETLAADRARWQELAENAALRAE 383

Query: 311 TGFAPILLLDEISAHLDEDKRNA 333
              A  L + +    LD  ++ A
Sbjct: 384 HAEARHLEIADRLPELDSSRQGA 406



 Score = 36.0 bits (82), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 278  CDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRI 337
              K  +I   S GE+ +  + +  +  +L       AP  +LDE+ A LD+        +
Sbjct: 1124 GKKNASIHLLSGGEKALTAIALVFSMFQL-----NPAPFCMLDEVDAPLDDTNTERYANM 1178

Query: 338  VTDIGSQ---IFMT 348
            V  + +Q   IF++
Sbjct: 1179 VKRMSAQTQFIFIS 1192


>gi|225021525|ref|ZP_03710717.1| hypothetical protein CORMATOL_01546 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945907|gb|EEG27116.1| hypothetical protein CORMATOL_01546 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 570

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 69/216 (31%), Gaps = 25/216 (11%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I I+ L +      +   +      T+  G+ G GKT ++  +  L  GR     +
Sbjct: 1   MLADIAIENLGV-----ISRAAMELSPGLTVLTGETGAGKTMVVTGLRLLVGGR-----A 50

Query: 61  YADVTRIG-SPSFFSTFARVEGMEGL-----ADISIKLETRDDRSVRCLQINDVVI--RV 112
            A   R G + +       ++G++        D+ +    R D     +    V +  R 
Sbjct: 51  DASRVRSGAAQAAVEGRFVLDGVDSEVAGAARDVVVSAGGRLDEGGEVIVSRTVSVGGRS 110

Query: 113 VDELNKHL----RISWLVPSMDRIFSGLSMERRRFLDRMVFAI---DPRHRRRMIDFERL 165
              L   L     +      +  I       R    +  + A+   DP+    ++ +   
Sbjct: 111 KAHLGGRLVPAAALQEFSAELLTIHGQNDQLRLLAPEEQLAAVDRCDPKIAELLVGYREA 170

Query: 166 MRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR 201
                RL+ +    +     +  +   L   I+  R
Sbjct: 171 FGRWRRLVRDLRSRTESRRELAQEADRLQFAISEIR 206


>gi|110598020|ref|ZP_01386300.1| ABC transporter related [Chlorobium ferrooxidans DSM 13031]
 gi|110340368|gb|EAT58860.1| ABC transporter related [Chlorobium ferrooxidans DSM 13031]
          Length = 423

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 9/55 (16%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           S GEQ+ V + + LA             I++LDE  AHLD + R  + +I+ ++ 
Sbjct: 143 SGGEQQRVALAMVLAQ---------EPKIIMLDESIAHLDINHRQEVLQILMNLN 188


>gi|313900030|ref|ZP_07833530.1| conserved hypothetical protein [Clostridium sp. HGF2]
 gi|312955082|gb|EFR36750.1| conserved hypothetical protein [Clostridium sp. HGF2]
          Length = 249

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 16 RNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISF 49
          R  +S+ +L FDA  T FVG+NG GK+ +LEAI+ 
Sbjct: 29 RCLSSMGQLSFDAPVTFFVGENGTGKSTLLEAIAV 63


>gi|303246316|ref|ZP_07332596.1| AAA ATPase [Desulfovibrio fructosovorans JJ]
 gi|302492379|gb|EFL52251.1| AAA ATPase [Desulfovibrio fructosovorans JJ]
          Length = 264

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
           L FD   TI VG+NG GK+ +LE I+ L+
Sbjct: 43 ELSFDKAITIVVGENGAGKSTLLEGIAALA 72


>gi|255348696|ref|ZP_05380703.1| excinuclease ABC subunit A [Chlamydia trachomatis 70]
 gi|255503236|ref|ZP_05381626.1| excinuclease ABC subunit A [Chlamydia trachomatis 70s]
          Length = 1786

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 11/72 (15%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNI-LEAIS------FLSP 52
          M++ +++  + +   RN  ++ + F  +   +F G +G GK+++    I       +L+ 
Sbjct: 1  MSSIVRLSGITV---RNLKNITVEFCPREIVLFTGVSGSGKSSLAFNTIYAAGRKRYLAT 57

Query: 53 GRGFRRASYADV 64
             F       +
Sbjct: 58 LPSFFTTKLDSL 69


>gi|255066569|ref|ZP_05318424.1| putative ATP/GTP-binding protein [Neisseria sicca ATCC 29256]
 gi|255049153|gb|EET44617.1| putative ATP/GTP-binding protein [Neisseria sicca ATCC 29256]
          Length = 306

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 49/142 (34%), Gaps = 20/142 (14%)

Query: 5   IKIKFLNISEFRNYASLRLVFDAQH-TIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           + ++   I  FR+  ++ + F      +  G+N +GKTN L A++       F      +
Sbjct: 1   MILRKFQIKNFRSLINVNVKFIDNLPIVISGENNIGKTNFLRALNVY-----FNHIHDKN 55

Query: 64  V----------TRIGSPSF---FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
           +             GS             E    +  + ++ + + + S +    +    
Sbjct: 56  LYHAETDIPHHIYYGSRGGRTKTELIGEFENHGKIIKLLVRFDAKGNSSYKLDSKDINDN 115

Query: 111 RVVDELNKHLRISWLVPSMDRI 132
           +  D L++  +  ++      +
Sbjct: 116 KAFDFLSE-FKFIFIESHNIHL 136


>gi|297588516|ref|ZP_06947159.1| DNA repair protein RecN [Finegoldia magna ATCC 53516]
 gi|297573889|gb|EFH92610.1| DNA repair protein RecN [Finegoldia magna ATCC 53516]
          Length = 565

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +  L I  F     + + F     I  G+ G GK+ ++EA   L
Sbjct: 2  LNSLYIENFAIIDKINVDFTDGLNIITGETGSGKSILIEAFELL 45


>gi|229816075|ref|ZP_04446396.1| hypothetical protein COLINT_03131 [Collinsella intestinalis DSM
           13280]
 gi|229808389|gb|EEP44170.1| hypothetical protein COLINT_03131 [Collinsella intestinalis DSM
           13280]
          Length = 558

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNA---LFRIVTDIGSQ 344
           S G+Q+ V +   LA             +L+LDE  A LD D R     L   +   GS 
Sbjct: 456 SGGQQRSVALAGVLAM---------RQDVLVLDEPMAGLDPDGRRRVRDLLHALKHAGST 506

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           + M          L +    + +   +AL
Sbjct: 507 LIMVTHSMEDVAELADH--VIVLERGRAL 533


>gi|171915874|ref|ZP_02931344.1| hypothetical protein VspiD_31925 [Verrucomicrobium spinosum DSM
          4136]
          Length = 385

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          +K L++  +R+    RL    + T+  G+NG GK+N+  +++ L
Sbjct: 2  LKILHLRGYRSLLDFRLSLS-RLTVITGENGAGKSNVYRSLAML 44


>gi|171691462|ref|XP_001910656.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945679|emb|CAP71792.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1421

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 24  VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
                 T  +GDNG GK+ I+EA+ +   GR  R  
Sbjct: 377 DLTPGLTFLIGDNGSGKSTIMEAMVWCQFGRCIRGG 412


>gi|330862472|emb|CBX72629.1| hypothetical protein YEW_AY04970 [Yersinia enterocolitica W22703]
          Length = 362

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 11/93 (11%)

Query: 5  IKIKFLNISEFRNYA-SLRLVF------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          ++I  L +    +     ++ F              G  G GKT +L+AI      +  R
Sbjct: 1  MRILSLRLKNINSLQGEWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHQTPR 60

Query: 58 ---RASYAD-VTRIGSPSFFSTFARVEGMEGLA 86
               S  + +TR  + S       V+G    A
Sbjct: 61 LNVTPSQNELMTRHTAESLAEVEFEVKGTRYRA 93


>gi|289525373|emb|CBJ14850.1| excinuclease ABC subunit A [Chlamydia trachomatis Sweden2]
 gi|296434925|gb|ADH17103.1| excinuclease ABC subunit A [Chlamydia trachomatis E/150]
 gi|296438645|gb|ADH20798.1| excinuclease ABC subunit A [Chlamydia trachomatis E/11023]
          Length = 1786

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 11/72 (15%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNI-LEAIS------FLSP 52
          M++ +++  + +   RN  ++ + F  +   +F G +G GK+++    I       +L+ 
Sbjct: 1  MSSIVRLSGITV---RNLKNITVEFCPREIVLFTGVSGSGKSSLAFNTIYAAGRKRYLAT 57

Query: 53 GRGFRRASYADV 64
             F       +
Sbjct: 58 LPSFFTTKLDSL 69


>gi|260220183|emb|CBA27466.1| hypothetical protein Csp_A02420 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 553

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 1  MTNRIKIKFLNISE--FRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          M  ++++K L   +  FR   ++ + F  + T+  G NG+GK+ IL
Sbjct: 1  MAAKVQVKSLTFGKPPFRKLGNINIEFAHRLTLIAGHNGIGKSTIL 46


>gi|255506914|ref|ZP_05382553.1| excinuclease ABC subunit A [Chlamydia trachomatis D(s)2923]
          Length = 1786

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 11/72 (15%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNI-LEAIS------FLSP 52
          M++ +++  + +   RN  ++ + F  +   +F G +G GK+++    I       +L+ 
Sbjct: 1  MSSIVRLSGITV---RNLKNITVEFCPREIVLFTGVSGSGKSSLAFNTIYAAGRKRYLAT 57

Query: 53 GRGFRRASYADV 64
             F       +
Sbjct: 58 LPSFFTTKLDSL 69


>gi|237749569|ref|ZP_04580049.1| DNA repair protein RecN [Oxalobacter formigenes OXCC13]
 gi|229380931|gb|EEO31022.1| DNA repair protein RecN [Oxalobacter formigenes OXCC13]
          Length = 551

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 18/127 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L + +F    S+ L F +  +   G+ G GK+ +++A+     GRG      + V R
Sbjct: 2   LRALTVHDFVIVDSMELDFSSGFSALTGETGAGKSILIDALQLTLGGRG-----DSSVVR 56

Query: 67  IGS-----------PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI--RVV 113
            G+               + + R   ++   D  +   T D        IN V +    +
Sbjct: 57  EGASKADIGAEFSVNEAVTEWLRANEIDAGDDSVLIRRTIDSSGRSRGFINGVAVTTSQM 116

Query: 114 DELNKHL 120
            EL   L
Sbjct: 117 RELASLL 123


>gi|118099787|ref|XP_415694.2| PREDICTED: similar to ATP-binding cassette sub-family A member 9
           [Gallus gallus]
          Length = 1461

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 13/98 (13%)

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           + +     S G+++ + + I            G   +LLLDE    LD   R+ ++ ++ 
Sbjct: 508 QDVHADSLSGGQKRKLSLAI---------AILGDPQVLLLDEPMVGLDPCSRHHVWELLA 558

Query: 340 D--IGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           +   G    +        D+  +   F+  SN +  C+
Sbjct: 559 ERRAGRVTLICTQSVEEADACADRKAFL--SNGRVQCV 594


>gi|125974897|ref|YP_001038807.1| SMC protein-like protein [Clostridium thermocellum ATCC 27405]
 gi|256003847|ref|ZP_05428834.1| SMC domain protein [Clostridium thermocellum DSM 2360]
 gi|281418637|ref|ZP_06249656.1| SMC domain protein [Clostridium thermocellum JW20]
 gi|125715122|gb|ABN53614.1| SMC protein-like protein [Clostridium thermocellum ATCC 27405]
 gi|255992185|gb|EEU02280.1| SMC domain protein [Clostridium thermocellum DSM 2360]
 gi|281407721|gb|EFB37980.1| SMC domain protein [Clostridium thermocellum JW20]
 gi|316939109|gb|ADU73143.1| SMC domain protein [Clostridium thermocellum DSM 1313]
          Length = 883

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          ++I  L+I  F    +L + F     +  G+N  GKT +
Sbjct: 1  MRIDKLDIRGFGKIHNLIIEFSKGFNLVYGENEAGKTTV 39



 Score = 40.7 bits (94), Expect = 0.34,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 26/196 (13%)

Query: 175 EGYFDSSWCS-SIEAQMAELGVKINIARVEMINALSSLIMEY-VQKENFPHIKLSLTGFL 232
            G  D      S +  + E G  I       I  L     E   +KE    I  SL   L
Sbjct: 679 NGRIDEIVLEMSRDWALVERGCLIENE----IQELEVKTAELEREKERLLDIGKSLKTAL 734

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH---RSDLIVDYCD------KAIT 283
           D   +++   +K E+A  L   +K+ S++     G +   R+D             + + 
Sbjct: 735 DV-LEEAALEIKREFAPLL--NQKLGSIAGFITQGKYSEVRADDSFMIRALEPGTRRIVE 791

Query: 284 IAHGSTG--EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKR---NALFRIV 338
           +   S G  EQ  + + + +A A  +    G    L++DE+ AH D+ +      +   +
Sbjct: 792 LPFLSGGTVEQ--LYLALRIALAETV-EDGGEVLPLIMDEVFAHYDDTRVFSTLKMLFEL 848

Query: 339 TDIGSQIFMTGTDKSV 354
           +     IF T  D+ +
Sbjct: 849 SKERQIIFFTCKDREM 864


>gi|330718943|ref|ZP_08313543.1| ABC-type cobalt transport system, ATPase component [Leuconostoc
           fallax KCTC 3537]
          Length = 273

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 16/91 (17%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ--- 344
           S G+++ V +   LA             I++LDE +A LD + R A+   +T +  Q   
Sbjct: 140 SGGQKQRVALASVLAL---------QPKIIILDEATAMLDPEGRQAVMATLTQLKEQFGD 190

Query: 345 --IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
               +T T      +L +  + + I++ Q +
Sbjct: 191 ALTLVTITHDMDEAALAD--RVVVINDGQLI 219


>gi|297744975|emb|CBI38567.3| unnamed protein product [Vitis vinifera]
          Length = 1027

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 73/259 (28%), Gaps = 33/259 (12%)

Query: 17  NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFRRASYADVTRIGSPSFF 73
            ++SL++          G NG GK+ IL A+      R     R  +  +  + G     
Sbjct: 2   CHSSLQIELGEWLNFVTGQNGSGKSAILTALCVAFGSRAKETQRATTLKEFIKTGCSYAV 61

Query: 74  ---------------STFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNK 118
                            +  V  +E    +S       D   + +         + EL +
Sbjct: 62  IQVEIKNEGEDAFKPEIYGDVIIVERRISVSTSSTVLKDHQGKRVASRKED---LHELVE 118

Query: 119 HLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYF 178
           H  I    P           + R FL       + + + +      L++  N LL     
Sbjct: 119 HFNIDVENPC----VIMSQDKSREFLHSG----NDKDKFKFFFKATLLQQVNDLLVNIGT 170

Query: 179 DSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQ 238
                +++  ++ +    I       +N L   I      E        L   L   +  
Sbjct: 171 RLDSANTLVEELEKSIEPILKE----LNELQVKIRNMEHVEEISQQVQQLKKKLAWSWVY 226

Query: 239 SFCALKEEYAKKLFDGRKM 257
                 +E + K+   +  
Sbjct: 227 DVDRQLQEQSAKIEKLKDR 245


>gi|90022380|ref|YP_528207.1| alkylhydroperoxidase AhpD core [Saccharophagus degradans 2-40]
 gi|89951980|gb|ABD81995.1| DNA repair protein RecN [Saccharophagus degradans 2-40]
          Length = 557

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 60/187 (32%), Gaps = 29/187 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+IS+F    +L L      T   G+ G GK+  L+A++ L+ G      + AD  R
Sbjct: 2   LTHLHISDFTLVDTLDLELQPGLTTVTGETGAGKSITLDALA-LALGD----RADADKVR 56

Query: 67  IGSPSFFST---------FARVEGMEGLADIS---IKLETRDDRSVRCLQIND--VVIRV 112
            G+               FAR +  E   D     I              IN   V ++ 
Sbjct: 57  PGAKKADIHASFCLKALPFARKQLEEQDLDQGDECILRRVVTSEGRSRAYINGHTVTLQQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR------MVFAIDPRHRRRMIDFERLM 166
           +    + L           +    +   RR LD       +V  I      +     + +
Sbjct: 117 LRSFGESLIDIHSQHEHQSLLK--TSTHRRLLDDFGGNENLVKQIKAAF-NQWHTANQTL 173

Query: 167 RG-RNRL 172
              RN  
Sbjct: 174 EQVRNNS 180


>gi|327394296|dbj|BAK11718.1| ferric enterobactin transport ATP-binding protein FepC [Pantoea
           ananatis AJ13355]
          Length = 267

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 18/91 (19%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE++   +   LA             ++LLDE + HLD   R+AL  ++ + G    +
Sbjct: 150 SGGERQRAALARVLAQ---------KPQLILLDEPTNHLDPLGRHALLTLIKNKG----I 196

Query: 348 TGT----DKSVFDSLNETAKFMRISNHQALC 374
           T      D S+ D+  +    +     Q +C
Sbjct: 197 TAVAVLHDLSLIDTFADRVLILS-QGEQVVC 226


>gi|288573565|ref|ZP_06391922.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569306|gb|EFC90863.1| conserved hypothetical protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 338

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 53/154 (34%), Gaps = 29/154 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--------RR 58
           I+ ++++ F     L      +  + +G+NG GKT +L+A+   S  R          R+
Sbjct: 2   IEKVDLNNFGPLKHLHWPDLGKINLVIGENGRGKTFLLKALY--SAVRSIEMSGRGDDRQ 59

Query: 59  ASYA-----------------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVR 101
           +S A                 D+   GS       A ++G E           +  +   
Sbjct: 60  SSLADLLARKLHWTFQAEKIGDLVTKGSDEKLRMRAVIDGDELEYSFGKDTTKQITKIGW 119

Query: 102 --CLQINDVVIRVVDELNKHLRISWLVPSMDRIF 133
               + ++ +     EL     +      +D++F
Sbjct: 120 EGSFRKDNSIFIPAKELLSIHHVVLRSREVDQVF 153


>gi|171742971|ref|ZP_02918778.1| hypothetical protein BIFDEN_02094 [Bifidobacterium dentium ATCC
          27678]
 gi|171278585|gb|EDT46246.1| hypothetical protein BIFDEN_02094 [Bifidobacterium dentium ATCC
          27678]
          Length = 221

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 13/64 (20%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS------PGRGFRRA 59
          +I  L     R+     L F    T  VG+NG GK+ +LEAI+ +         R +R +
Sbjct: 32 RIPSL-----RSLD--ELGFHKNITFLVGENGSGKSTLLEAIAVVCGFNAEGGTRNYRFS 84

Query: 60 SYAD 63
          +Y D
Sbjct: 85 TYDD 88


>gi|149908990|ref|ZP_01897649.1| putative ABC transporter ATP-binding protein [Moritella sp. PE36]
 gi|149808001|gb|EDM67944.1| putative ABC transporter ATP-binding protein [Moritella sp. PE36]
          Length = 550

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 14/104 (13%)

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           VD  D  ++    S G++K   + + LA+            I++LDE +A  D   R   
Sbjct: 445 VDVADGRLSTTELSQGQRKR--LALLLAYLE-------DRSIIVLDEWAADQDPTFRRIF 495

Query: 335 FRIV---TDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQALCI 375
           +  +        +  +  T    +  L +  K  RI   Q   +
Sbjct: 496 YTELLPELKARGKTVIAITHDDHYFHLAD--KLYRIDAGQLSLV 537


>gi|156740382|ref|YP_001430511.1| DNA repair protein RecN [Roseiflexus castenholzii DSM 13941]
 gi|156231710|gb|ABU56493.1| DNA repair protein RecN [Roseiflexus castenholzii DSM 13941]
          Length = 601

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L IS+F     L L F     +  G+ G GK+ I++A   L   RG R        R
Sbjct: 2  LLELTISDFAIIERLNLRFCDGFNVLTGETGAGKSIIIDA---LGTLRGDRT--DPSFVR 56

Query: 67 IGSPSFFSTFARVEGMEGLAD 87
           G        ARVEG+  + D
Sbjct: 57 SGCER-----ARVEGVFSIND 72


>gi|325288506|ref|YP_004264687.1| SMC domain protein [Syntrophobotulus glycolicus DSM 8271]
 gi|324963907|gb|ADY54686.1| SMC domain protein [Syntrophobotulus glycolicus DSM 8271]
          Length = 430

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 6  KIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          KI  L I   +   ++++   A   TI  G N  GKT++L++I++   G  +R ++
Sbjct: 4  KINKLEIENVKRVKAVKIEPTANGLTIVGGKNNQGKTSVLDSIAWALGGEKYRPSN 59


>gi|299779010|ref|YP_003734204.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          IME08]
 gi|298105739|gb|ADI55383.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          IME08]
          Length = 560

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 5  IKIKFLNISEFRNY-----ASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          +K   L    ++N        + +  D  Q T+  G NG GK+  LEA++F   G+ FR 
Sbjct: 1  MKTFKLKKVTYKNIMSVGQQPITIQLDKVQKTLVTGKNGAGKSTFLEAVTFALFGKPFRD 60

Query: 59 ASYADVTR 66
               +  
Sbjct: 61 VKKGQLIN 68


>gi|241763500|ref|ZP_04761553.1| AAA ATPase [Acidovorax delafieldii 2AN]
 gi|241367341|gb|EER61672.1| AAA ATPase [Acidovorax delafieldii 2AN]
          Length = 553

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 1  MTNRIKIKFLN--ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          M  ++++K L+  +  FR   ++ + F  + T+  G NG+GK+ IL
Sbjct: 1  MAAKVQVKSLSFGMPPFRKLGNINIDFAERLTLIAGHNGIGKSTIL 46


>gi|296131272|ref|YP_003638522.1| ABC transporter related protein [Cellulomonas flavigena DSM 20109]
 gi|296023087|gb|ADG76323.1| ABC transporter related protein [Cellulomonas flavigena DSM 20109]
          Length = 325

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 14/89 (15%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQ 344
           S G+++ + V + L          G   ++LLDE +  LD + R+ L+  +      G+ 
Sbjct: 137 SGGQKRRLAVALAL---------VGRPRLVLLDEPTTGLDVEARHVLWDALRTYHADGAT 187

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           + +T       ++L E  + + ++  + L
Sbjct: 188 VIVTSHYLEEIEALAE--RVVVVAEGRVL 214


>gi|223043583|ref|ZP_03613628.1| hypothetical protein STACA0001_0705 [Staphylococcus capitis SK14]
 gi|222443071|gb|EEE49171.1| hypothetical protein STACA0001_0705 [Staphylococcus capitis SK14]
          Length = 979

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 77/238 (32%), Gaps = 37/238 (15%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + ++ +   L  +++    + +N    
Sbjct: 729 YHSNLNRFNDLTQYLENQNYSYEMSSKLSEKTTAQLDEEDDTLARQVDQYNDQYLNMQAE 788

Query: 207 --ALSSLIMEYVQKENFP---HIKLSLTGFL-----DGKFDQSFCALKEEYAKKLFDGRK 256
              L++ I             H   SL   L     D         L EE+ K++ D R 
Sbjct: 789 VSDLTAQINHMETDSTLAQLRHEYYSLKNRLNDIAKDWASLSYLQNLVEEHIKQIKDKRL 848

Query: 257 MDSMSR------------RTLIGPHRSD-LIVDYCDKAI-TIAHGSTGEQKVVLVGIFLA 302
              +               T+I     D + V + +  +      S   ++++ V + ++
Sbjct: 849 PQVIQEAVSIFKYLTNGAYTMINYTEDDSIHVKHDNGQVFEPVELSQSTKELLYVALRIS 908

Query: 303 HARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIF-MTGTDKSVFDS 357
             +++         +++D+   H D+ ++  +   + ++    Q+   T T  ++  S
Sbjct: 909 LIKVLKPYY--PFPIIVDDAFVHFDKHRKERMLNYLRELSRNYQVLYFTCTKDNIIPS 964


>gi|60392985|sp|P70388|RAD50_MOUSE RecName: Full=DNA repair protein RAD50; Short=mRad50
 gi|1575575|gb|AAC52894.1| RAD50 [Mus musculus]
          Length = 1312

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIISFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|331016631|gb|EGH96687.1| DNA repair protein RecN [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 557

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 68/218 (31%), Gaps = 33/218 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +     L L  D   ++  G+ G GK+ +L+A+      R     + + V R
Sbjct: 2   LVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDR-----ADSGVVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
            G+                  A ++  +   D    L        R    IN       D
Sbjct: 57  PGADKADILATFDLGDIPEAEAWLKERDLDNDSPCILRRVITAEGRSRSYINGSPCPQGD 116

Query: 115 --ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRL 172
              L + L           +    +   RR LD    A D      +     L   R   
Sbjct: 117 LKALGELLIDIHSQHEHQSLLK--TDTHRRLLDEYAGATD------LARQVHLAAQR--- 165

Query: 173 LTEGYFDSSWCS-SIEAQMAELGVKINIARVEMINALS 209
             +   +    S S + Q A    ++   ++E + +LS
Sbjct: 166 WRQTRQELERLSNSGDEQRARH--QLLSYQLEELESLS 201


>gi|330995013|ref|ZP_08318933.1| DNA repair protein recN [Gluconacetobacter sp. SXCC-1]
 gi|329757926|gb|EGG74450.1| DNA repair protein recN [Gluconacetobacter sp. SXCC-1]
          Length = 197

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L L F    T+  G+ G GK+ +L++   L    G R +  A + R
Sbjct: 2  LTQLSIRDVVLIEKLDLAFPPGLTVLTGETGAGKSILLDS---LGLALGERAS--ASLVR 56

Query: 67 IGSPSF 72
           G    
Sbjct: 57 AGCEQA 62


>gi|317121996|ref|YP_004101999.1| DNA repair protein RecN [Thermaerobacter marianensis DSM 12885]
 gi|315591976|gb|ADU51272.1| DNA repair protein RecN [Thermaerobacter marianensis DSM 12885]
          Length = 576

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 77/246 (31%), Gaps = 44/246 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I       + ++ F     +  G+ G GK+ +++A   LS   G R +      R
Sbjct: 2   LAELVIENIALIDAAQVEFGPGLNLLTGETGAGKSILIDA---LSLALGERASPDR--VR 56

Query: 67  IGSPSFFSTFARV---------------EGMEGLADISIKLETRDDRSVRC-LQINDVVI 110
            G+P+       V                G+    D  + L     R+ R   +IN   +
Sbjct: 57  EGAPAGRVDAVFVLDPGPPPALAALLEEAGLAPDDDGRLILSREITRAGRSTARINGRPV 116

Query: 111 --RVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM-- 166
              ++ ++   L           +      ++  +LD +        R R+ +    +  
Sbjct: 117 TTSLLRQVGSLLVEVHGQGDNQTLL--DPDKQLEWLDALAGDAVAGLRARLAERVAALRS 174

Query: 167 ------------RGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMI---NALSSL 211
                       R R R L    F         A++A    +   AR + +     L+  
Sbjct: 175 VAARLRALAADPRERQRELDLLRFQMDEIDQ--ARLAPGEEEELAARRQRLAGAERLARQ 232

Query: 212 IMEYVQ 217
           + +  +
Sbjct: 233 LGDAYE 238


>gi|295100836|emb|CBK98381.1| DNA replication and repair protein RecN [Faecalibacterium
           prausnitzii L2-6]
          Length = 555

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 51/175 (29%), Gaps = 25/175 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASYADVT 65
           +  L I          + F+    +  G+ G GK+ ++++I + L      R +    + 
Sbjct: 2   LSSLQIENVAVIQKANVHFEKGLNVLTGETGAGKSILIDSINAILGN----RTSKD--LV 55

Query: 66  RIGSPSFFSTFA------------RVEGMEGLADISIKLETRDDRSVRCLQINDVV--IR 111
           R G+       A               G E    + +  E   +      +IN +     
Sbjct: 56  RTGAAKAVIRAAFEDVPPAVLDSLEKAGYERSEALLLSREITAEGKS-ACRINGMPATAA 114

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLM 166
           V+ EL   L           + +         LD         ++     +  L+
Sbjct: 115 VLRELCGGLININGQHDSVGLLN--PARHEGILD-AYAQNSAEYQAYYAIYRELV 166


>gi|289178831|gb|ADC86077.1| ABC transporter, ATP-binding protein [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 518

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 14/89 (15%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ--- 344
           STG+ ++V +   LA           APIL+LDE  + LD   +     +V D+  Q   
Sbjct: 420 STGQTRLVALASTLAT---------QAPILVLDEPVSGLDYRLKTKFMTLVRDLNKQGIT 470

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           + M   D  + +     A  +R+   + +
Sbjct: 471 VIMASNDDDLVERYCTHA--LRMEEGRIV 497


>gi|238920936|ref|YP_002934451.1| recombination and repair protein [Edwardsiella ictaluri 93-146]
 gi|238870505|gb|ACR70216.1| DNA repair protein RecN, putative [Edwardsiella ictaluri 93-146]
          Length = 553

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 23/203 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L ++ F     L + F    T   G+ G GK+  ++A++    GR       A + R
Sbjct: 2   LTQLTVANFAIVRELEVDFQRGMTAITGETGAGKSIAIDALTLCLGGRS-----EAAMVR 56

Query: 67  IGSPSFF-----------STFARVEGMEGLADISIKLETRDDRSVRCL-QIND--VVIRV 112
           +  P              S  A +E  +        L        R    IN   V +  
Sbjct: 57  MNMPRADICARFSLADTPSARAWLESNQLDDSNECLLRRVISADGRSRGFINGTAVPLSQ 116

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID--PRHRRRMIDFERLMRGRN 170
           + +L + L       +   +       +R  LD            R     +   +R   
Sbjct: 117 LRDLGQLLIQIHGQHAHQLLLK--PEHQRHLLDAYGQQHTLLHEMRAAYRQWHHSVRLLA 174

Query: 171 RLLTEGYFDSSWCSSIEAQMAEL 193
               +     +    ++ Q+ EL
Sbjct: 175 DHRRQISDREARRELLQYQLKEL 197


>gi|218289625|ref|ZP_03493845.1| DNA repair protein RecN [Alicyclobacillus acidocaldarius LAA1]
 gi|218240275|gb|EED07458.1| DNA repair protein RecN [Alicyclobacillus acidocaldarius LAA1]
          Length = 557

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 110/354 (31%), Gaps = 57/354 (16%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L +  F     LRL  D    +  G+ G GK+ +L+A   +  GR         +  
Sbjct: 2   LQELYVRHFVLIDELRLQLDRGLHVLTGETGAGKSLVLDATRAILGGR-----VAGPMAS 56

Query: 67  IGSPSFFSTFARVE------------GMEGLADISI-KLETRDDRSVRCLQINDVVIRVV 113
            GSP+       V+            G++   +I + +    + R+   +    V ++++
Sbjct: 57  NGSPAVVEAVFDVQANEAAERLLASWGIDHSGEIVVSRTFHSNGRAQNRVNGRSVTVQML 116

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMRG 168
            EL   L    L    + I    +  +RR LD      +         R   D  R  R 
Sbjct: 117 RELGDTL--VELQDQHESIALMTASYQRRLLDLYGQHEELAASCADAYRAWQDAVRQWRE 174

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGV------KINIAR------VEMINALSSLIMEYV 216
                 E        +    ++ E G+      ++   R       ++  +L+ +     
Sbjct: 175 AQVSERERAQQIDLYALQVRELEEAGLRAGEEDELRAERDRLKREQQIAESLAQMAALLD 234

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
             ++    +L     +      S     EE AK L   R     +  TL        +  
Sbjct: 235 DGKSGAIARLHEAERMAAALSTS-SDRAEEIAKLLETARVHAEEASFTL-----HRFLSR 288

Query: 277 YCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDK 330
                  +                LA  R +S   G       +E+ AHL+  +
Sbjct: 289 VSHDPARLDEIEE----------RLALIRRLSRKYGSTT----EEMLAHLERAR 328


>gi|183601413|ref|ZP_02962783.1| ABC-type cobalt transport system, ATPase component [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219683469|ref|YP_002469852.1| ABC-type cobalt transport system, ATPase component [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241191087|ref|YP_002968481.1| cobalt ABC transporter ATPase [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196493|ref|YP_002970048.1| cobalt ABC transporter ATPase [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219019|gb|EDT89660.1| ABC-type cobalt transport system, ATPase component [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219621119|gb|ACL29276.1| ABC-type cobalt transport system, ATPase component [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240249479|gb|ACS46419.1| ABC-type cobalt transport system, ATPase component [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240251047|gb|ACS47986.1| ABC-type cobalt transport system, ATPase component [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295794076|gb|ADG33611.1| ABC-type cobalt transport system, ATPase component [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 511

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 14/89 (15%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ--- 344
           STG+ ++V +   LA           APIL+LDE  + LD   +     +V D+  Q   
Sbjct: 413 STGQTRLVALASTLAT---------QAPILVLDEPVSGLDYRLKTKFMTLVRDLNKQGIT 463

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           + M   D  + +     A  +R+   + +
Sbjct: 464 VIMASNDDDLVERYCTHA--LRMEEGRIV 490


>gi|118097616|ref|XP_414645.2| PREDICTED: similar to RAD50 protein [Gallus gallus]
          Length = 1314

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          KI+ ++I   R++         + F    TI VG NG GKT I+E + ++S G
Sbjct: 3  KIEKMSILGVRSFGVEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTG 55


>gi|51247032|ref|YP_066915.1| hypothetical protein DPPB61 [Desulfotalea psychrophila LSv54]
 gi|50878069|emb|CAG37925.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 382

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 3  NRIKIK--FLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          + + I    L I  F++   L + F+ A   + VG NG GK+N++      S  +  R  
Sbjct: 13 SNMSISLDKLTIRGFKSIREL-VDFELADLNVVVGGNGAGKSNLI------SFFKMLRAL 65

Query: 60 SYADVTRI 67
             ++ R 
Sbjct: 66 IDGNLNRY 73


>gi|12838332|dbj|BAB24167.1| unnamed protein product [Mus musculus]
          Length = 331

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 91/292 (31%), Gaps = 29/292 (9%)

Query: 78  RVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLS 137
             E M+ +   + +LE   +R    L+  +  ++ + EL    + ++       +     
Sbjct: 22  EKEHMDAINHDTKELEKMTNRQGMLLKKKEECMKKIRELGSLPQEAF--EKYQTLSLKQL 79

Query: 138 MERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKI 197
             +    +  +      +++ +  F      + +L+           SI   M  L ++ 
Sbjct: 80  FRKLEQCNTELKKYSHVNKKALDQFVNFSEQKEKLIKRQEELDRGYKSIMELMNVLELRK 139

Query: 198 NIARVEMINALSSLIMEYVQKE-NFPHIKLSLT-GFLDGKFDQSFCALKEEYAKKLFDGR 255
             A       +S    E  QK        L +  G ++G   Q       E         
Sbjct: 140 YEAIQLTFKQVSKNFSEVFQKLVPGGKATLVMKKGDVEGSQSQDEGEGSGE--------- 190

Query: 256 KMDSMSRRTLIGPHRSDL-----IVDYCDKA---ITIAHGSTGEQKVVLVGIFLAHARLI 307
             +  S      P           V +  K      +   S G++ +V + +  A     
Sbjct: 191 -SERGSGSQSSVPSVDQFTGVGIRVSFTGKQGEMREMQQLSGGQKSLVALALIFA----- 244

Query: 308 SNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDS 357
                 AP  L DEI   LD   R A+  ++ ++   +Q   T     + +S
Sbjct: 245 IQKCDPAPFYLFDEIDQALDAQHRKAVSDMIMELAVHAQFITTTFRPELLES 296


>gi|170781418|ref|YP_001709750.1| putative nucleotide-binding protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155986|emb|CAQ01120.1| putative nucleotide-binding protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 392

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 21/174 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L +S +R+   L L       +  G NG GK+N+  A+  ++           D+ +
Sbjct: 2   IRTLAVSGYRSVRDLALPLT-GLDVVTGANGSGKSNVYRALRLIA-----------DMAQ 49

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
            G+    +    +E +       I    RD        +    I         LR+ +  
Sbjct: 50  DGAVGALAREGGLEAVLWAGPEGISRAMRDGEHAVQGTMRKGPIA--------LRLGFAG 101

Query: 127 PSMDRIFS-GLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
             +  +   G+     R L   +F  DP  +R ++    + R R+ +L   + D
Sbjct: 102 DDLGYLVDLGIPQRDPRALPPTMFGRDPEIKRELVFSGSVARPRSLVLERRWQD 155


>gi|169827924|ref|YP_001698082.1| hypothetical protein Bsph_2399 [Lysinibacillus sphaericus C3-41]
 gi|168992412|gb|ACA39952.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 242

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAI 47
            L F    T FVG+NG GK+ +LEAI
Sbjct: 30 QELEFPTNVTFFVGENGSGKSTLLEAI 56


>gi|168238754|ref|ZP_02663812.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194737966|ref|YP_002115053.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|204928931|ref|ZP_03220074.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|194713468|gb|ACF92689.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288454|gb|EDY27835.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|204321475|gb|EDZ06674.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322613715|gb|EFY10655.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620285|gb|EFY17154.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623331|gb|EFY20172.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322630536|gb|EFY27305.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632787|gb|EFY29532.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638880|gb|EFY35574.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640354|gb|EFY37012.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647196|gb|EFY43695.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649021|gb|EFY45464.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653928|gb|EFY50252.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661035|gb|EFY57264.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663024|gb|EFY59231.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668469|gb|EFY64624.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673395|gb|EFY69498.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679182|gb|EFY75236.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683276|gb|EFY79291.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685854|gb|EFY81844.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195140|gb|EFZ80321.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198708|gb|EFZ83808.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204207|gb|EFZ89217.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209263|gb|EFZ94199.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210620|gb|EFZ95502.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216080|gb|EGA00810.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323223021|gb|EGA07367.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223685|gb|EGA07992.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231291|gb|EGA15405.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232617|gb|EGA16714.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240940|gb|EGA24980.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245641|gb|EGA29636.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246757|gb|EGA30728.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251113|gb|EGA34987.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323254882|gb|EGA38677.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260927|gb|EGA44525.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266277|gb|EGA49766.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271420|gb|EGA54842.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 271

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 18/91 (19%)

Query: 288 STGEQKVVLVG--IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ- 344
           S G++K V +   + L  AR +          LLDE +A LD   R  +  I+  I +Q 
Sbjct: 138 SHGQKKRVAIAGALVL-QARYL----------LLDEPTAGLDPAGRTQMLAIIRRIVAQG 186

Query: 345 --IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             + ++  D  +   +++    +R    Q L
Sbjct: 187 NHVIISSHDIDLIYEISDAVYVLR--QGQVL 215


>gi|158254626|dbj|BAF83286.1| unnamed protein product [Homo sapiens]
          Length = 615

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|149375342|ref|ZP_01893113.1| predicted ATPase [Marinobacter algicola DG893]
 gi|149360378|gb|EDM48831.1| predicted ATPase [Marinobacter algicola DG893]
          Length = 393

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          I    +S +R+  S+ +       +  G NG GK+N+ +++  L+
Sbjct: 2  INAFAVSNYRSLKSI-VAPLTGLNVVTGPNGCGKSNLYKSLRLLA 45


>gi|120610085|ref|YP_969763.1| hypothetical protein Aave_1398 [Acidovorax citrulli AAC00-1]
 gi|120588549|gb|ABM31989.1| hypothetical protein Aave_1398 [Acidovorax citrulli AAC00-1]
          Length = 610

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 14/64 (21%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT--------IFVGDNGVGKTNIL----EAISFLSP 52
          + +K L I    +  +  L    Q T        I VG NG GKTN+L    +AI  L  
Sbjct: 1  MHLKHLMIYN--SGPTQELDLQPQFTADGLPKPLILVGLNGAGKTNVLSTIADAILELQV 58

Query: 53 GRGF 56
            GF
Sbjct: 59 AAGF 62


>gi|111026981|ref|YP_708959.1| hypothetical protein RHA1_ro11154 [Rhodococcus jostii RHA1]
 gi|110825520|gb|ABH00801.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 488

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ + IS FR    L L   +  T   G NG GK+ I      +S G  +++AS A ++R
Sbjct: 27 LQSIEISGFRGIQHLELDLKSPITAISGLNGTGKSTI---AQLMSCG--YKKASTAALSR 81

Query: 67 IGSPSFFSTFA 77
               FF   A
Sbjct: 82 YYVKDFFPISA 92


>gi|78776265|ref|YP_392580.1| ABC transporter-related protein [Sulfurimonas denitrificans DSM
           1251]
 gi|78496805|gb|ABB43345.1| ABC transporter-related protein [Sulfurimonas denitrificans DSM
           1251]
          Length = 260

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+++ VL+   L              +LLLDE +AHLD      L   +  +     +
Sbjct: 143 SGGQKQKVLLASLLCV---------EPEVLLLDEPTAHLDPPTTGWLVEFLDSLDVTALI 193

Query: 348 TGTDKSVFDSLNETAKFMRISNHQAL 373
           +  + S+   L   A  + I NH+ +
Sbjct: 194 STHNISLGKELAGRAIVIGI-NHEIV 218


>gi|153945822|ref|NP_033038.2| DNA repair protein RAD50 [Mus musculus]
 gi|56206965|emb|CAI24691.1| RAD50 homolog (S. cerevisiae) [Mus musculus]
 gi|148701627|gb|EDL33574.1| RAD50 homolog (S. cerevisiae) [Mus musculus]
 gi|195934765|gb|AAI68398.1| RAD50 homolog (S. cerevisiae) [synthetic construct]
          Length = 1312

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIISFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|42522931|ref|NP_968311.1| ABC transporter, ATP-binding protein [Bdellovibrio bacteriovorus
           HD100]
 gi|39574127|emb|CAE79304.1| ABC transporter, ATP-binding protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 543

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 273 LIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
                 +    I+  S GE+  V++   LA             +L+LDE + HLD   R 
Sbjct: 435 FKFSGEEAEKKISILSGGEKSRVVLACILAQ---------PVNLLILDEPTNHLDIKSRE 485

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
            L   + +    + +   D+     +  T +   +  +Q 
Sbjct: 486 LLLDAIKNFPGTVMIVSHDRHFLREV--TTRVFEVDKNQI 523



 Score = 36.0 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 21/118 (17%)

Query: 252 FDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
            + R  + ++    +G    D          + +  S G +  + +   LA         
Sbjct: 138 LESRAAEILTG---LGIGPDDY------HRPSESF-SGGWKMRIALAKILAL-------- 179

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISN 369
               +LL+DE + HLD +    L   + +    I MT  D+   + L    K + I+N
Sbjct: 180 -NPEVLLMDEPTNHLDVESIVWLEEWLVNFKGAILMTSHDRDFMNRL--VGKIVEIAN 234


>gi|89074799|ref|ZP_01161253.1| hypothetical protein SKA34_09458 [Photobacterium sp. SKA34]
 gi|89049374|gb|EAR54936.1| hypothetical protein SKA34_09458 [Photobacterium sp. SKA34]
          Length = 246

 Score = 42.2 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 18 YASLR-LVFDAQHTIFVGDNGVGKTNILEAISF 49
             L  + F    T FVG+NG GK+ ++EAI+ 
Sbjct: 32 IKELDVIEFHPDVTFFVGENGAGKSTLIEAIAV 64


>gi|325281455|ref|YP_004253997.1| putative ABC transporter ATP-binding protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324313264|gb|ADY33817.1| putative ABC transporter ATP-binding protein [Odoribacter
           splanchnicus DSM 20712]
          Length = 279

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 18/174 (10%)

Query: 199 IARVEMINALSSLIMEYV-QKENFPHIKLSLTGFLD--GKFDQSFCALKEEYAKKLFDGR 255
               ++ N L +++ +      +F   +L  T F +  G+ +Q    L E   +      
Sbjct: 111 KEYSQLYNELHTIVYDIGGSNPSFSDYRLKATNFPEEAGRINQRIKTLFETVDRLFAKT- 169

Query: 256 KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
                 +   I PH + LI     + I +   S+GE++++L+ +      L+        
Sbjct: 170 -----QKTIQIDPHTNHLIFIDDGEVIPLYKLSSGEKQLLLILMR---VFLMEEQ---PY 218

Query: 316 ILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVF-DSLNETAKFMR 366
           ILL+DE    L  + +  LF  +  +    QI  +    S+F D   +   F+ 
Sbjct: 219 ILLMDEPEISLHIEWQYKLFEEIRHLNPNCQIITSTHSPSLFGDGWGDKLVFVE 272


>gi|239608544|gb|EEQ85531.1| nuclear condensin complex subunit Smc2 [Ajellomyces dermatitidis
           ER-3]
          Length = 1197

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIVEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E    IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSKSPIGFEEYTSISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|229825487|ref|ZP_04451556.1| hypothetical protein GCWU000182_00847 [Abiotrophia defectiva ATCC
           49176]
 gi|229790050|gb|EEP26164.1| hypothetical protein GCWU000182_00847 [Abiotrophia defectiva ATCC
           49176]
          Length = 561

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 20/120 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   + +K L I +        + F     I  G+ G GK+ I+ +I+     +     +
Sbjct: 1   MLEGLHVKNLIIID-----EAEVSFGEGLNILTGETGAGKSVIIGSINLALGAK-----A 50

Query: 61  YADVTRIGSPSFFSTFA---------RVEGMEGLADISIKLETRDDRSVRCL-QINDVVI 110
             ++ R G  S F             ++E ++ + +  + + TR   + R + +IN   +
Sbjct: 51  GKNLVRAGKDSGFVELVFSVNEDTKKKLENLDIIPEEGLVVITRKFTAERSVSKINGETV 110


>gi|203288257|ref|YP_002223272.1| exonuclease SbcC [Borrelia recurrentis A1]
 gi|201085477|gb|ACH95051.1| exonuclease SbcC [Borrelia recurrentis A1]
          Length = 951

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 11/111 (9%)

Query: 5   IKIKFLNISEFRNYA-SLRLVFD------AQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
           ++I  L      +Y     + FD      +   +  G+ G GK+ IL+ I+     R +R
Sbjct: 1   MRINKLIFKNIASYKGEYEINFDVSVLRRSGIFLISGNTGAGKSTILDCITLALYARVYR 60

Query: 58  RASYADVTRIGSPSFFSTFARV--EGMEGLADISIKLETRDDRSVRCLQIN 106
                +++   S  F S + R+     E   +  I+L  +   + R + +N
Sbjct: 61  --LDKNISDFISKGFDSAYVRLTFTVSEKRYESFIELHIKQKETPRSMVLN 109


>gi|182677757|ref|YP_001831903.1| hypothetical protein Bind_0764 [Beijerinckia indica subsp. indica
          ATCC 9039]
 gi|182633640|gb|ACB94414.1| conserved hypothetical protein [Beijerinckia indica subsp. indica
          ATCC 9039]
          Length = 371

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 7/73 (9%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I+F+ +  F+ +    L   +  T+  G NG GK+ +++A+  L      R++  A    
Sbjct: 2  IEFIELRNFKTFDETELNLGS-LTLLAGLNGSGKSTVIQALGLL------RQSFDARFLT 54

Query: 67 IGSPSFFSTFARV 79
           G+ +       +
Sbjct: 55 SGALALNGELVEI 67


>gi|57234648|ref|YP_181293.1| exonuclease SbcC, putative [Dehalococcoides ethenogenes 195]
 gi|57225096|gb|AAW40153.1| exonuclease SbcC, putative [Dehalococcoides ethenogenes 195]
          Length = 859

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 10/103 (9%)

Query: 9   FLNISEFRNYASLRLVFDAQHT---IFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65
            L I  F  Y      F           G NG GK+ +++AI++   G+  R  S  DV 
Sbjct: 5   KLKIKNFMCYRGEIPPFSFNGVHTACICGQNGAGKSALIDAITWALWGKS-RAKSDDDVV 63

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
            +       +      ++      +    R  +  +    N  
Sbjct: 64  SLNEQEAEVS------LDFEISGELYQVIRQRQRPKKAGANGQ 100


>gi|21224305|ref|NP_630084.1| bldA-regulated nucleotide binding protein [Streptomyces
          coelicolor A3(2)]
 gi|256784609|ref|ZP_05523040.1| bldA-regulated nucleotide binding protein [Streptomyces lividans
          TK24]
 gi|289768494|ref|ZP_06527872.1| bldA-regulated nucleotide binding protein [Streptomyces lividans
          TK24]
 gi|15020687|emb|CAC44582.1| putative bldA-regulated nucleotide binding protein [Streptomyces
          coelicolor A3(2)]
 gi|289698693|gb|EFD66122.1| bldA-regulated nucleotide binding protein [Streptomyces lividans
          TK24]
          Length = 402

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          + +R +I  L +S F  +    L      T+  G +G GKT+ L A   L+   G
Sbjct: 17 VPDRPRITQLRLSAFAGHRRAVLRLGP-LTVLAGPSGSGKTSALRAYDALARLGG 70


>gi|89097270|ref|ZP_01170160.1| hypothetical protein B14911_16865 [Bacillus sp. NRRL B-14911]
 gi|89088093|gb|EAR67204.1| hypothetical protein B14911_16865 [Bacillus sp. NRRL B-14911]
          Length = 698

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 18/96 (18%)

Query: 7   IKFLNISEFRNYASLRLVFD------AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           I+ + I  F+    L L F       A   + +G+NGVGK+++L+AIS    G   R   
Sbjct: 289 IESVEIRNFKGLKYLNLDFGLSQSMGAPWLMLLGENGVGKSSVLQAISIGLMGEQKR--- 345

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADISIKLETRD 96
             +V    + +F +            + SIK++   
Sbjct: 346 -KEVILKSANNFVT--------NQKREGSIKIKLTG 372


>gi|329941221|ref|ZP_08290500.1| cobalt ABC transporter system ATP-binding subunit [Streptomyces
           griseoaurantiacus M045]
 gi|329299752|gb|EGG43651.1| cobalt ABC transporter system ATP-binding subunit [Streptomyces
           griseoaurantiacus M045]
          Length = 273

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           K     H S G+++ V V   LA             IL+LDE S++LD   R  L  I+ 
Sbjct: 152 KDRPPHHLSFGQRRRVAVATVLAM---------EPEILVLDEPSSNLDPASRRELADILR 202

Query: 340 DIGSQIFMTGTDKSVFDSLNETAKFM 365
            +   + M   D      L   A  +
Sbjct: 203 ALDVTVLMVTHDLPYALELCPRALIL 228


>gi|326329760|ref|ZP_08196081.1| ABC transporter, ATP-binding protein [Nocardioidaceae bacterium
           Broad-1]
 gi|325952525|gb|EGD44544.1| ABC transporter, ATP-binding protein [Nocardioidaceae bacterium
           Broad-1]
          Length = 243

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 23  LVFDAQHTIFVGDNGVGKTNILEAI---SFLSPGRGFRRASYADVTRIGSPSFFSTFARV 79
           L   A  T  VG+NG GK+ I+EA+     L+P  G R  +++      S S  S   R+
Sbjct: 40  LELAAGVTFLVGENGSGKSTIVEAVAAAYGLNPEGGSRNTNHS---TRASESPLSDVLRL 96

Query: 80  EGMEGLADISIKLE 93
           +   G A     L 
Sbjct: 97  QRGLGSARWGFFLR 110


>gi|296111977|ref|YP_003622359.1| hypothetical protein LKI_09255 [Leuconostoc kimchii IMSNU 11154]
 gi|295833509|gb|ADG41390.1| hypothetical protein LKI_09255 [Leuconostoc kimchii IMSNU 11154]
          Length = 788

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 83/240 (34%), Gaps = 45/240 (18%)

Query: 154 RHRRRMIDFERLMRG----RNRLLTEGYFDSSWCS--SIEAQMAELGVKINIARVEMINA 207
            + R+   ++ LM+     +   L +   D+       +  Q  E   ++ +     ++ 
Sbjct: 552 DYLRKKQRYDDLMQQIDSDKLIQLRQIKDDNELQKQIILTQQELEKAQQLVLTIQTQLSD 611

Query: 208 LSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE--------------------- 246
           L +   +    + F   +  L        DQ    L E+                     
Sbjct: 612 LQAQQKQRTSDDAFLKQQQDLANERTVLIDQFGDYLAEKMVVKWINQALQLASQNRFPKM 671

Query: 247 ------YAKKLFDGRKMDS-MSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
                 Y +KL  GR +     + TLI  +++    +  +        STG Q+ +   +
Sbjct: 672 SKKATCYFEKLTAGRYVAINFVKETLIVINQTGQQFNVIE-------LSTGTQEQLYTAL 724

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDS 357
            LA + +IS+       LL+D+   + D  +R  +  I+ +I    QIF   T  S  + 
Sbjct: 725 RLALSDVISDIISLP--LLIDDGFVNFDVPRRQIMLTILQEIAKQQQIFYFTTSDSYIEK 782


>gi|295401825|ref|ZP_06811790.1| putative OLD protein [Geobacillus thermoglucosidasius C56-YS93]
 gi|294976192|gb|EFG51805.1| putative OLD protein [Geobacillus thermoglucosidasius C56-YS93]
          Length = 637

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 5  IKIKFLNISEFRNY----------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSP 52
          ++IK + I  F+N             +     +     +G+N +GK++ILEA+    P
Sbjct: 1  MRIKEIVIRNFKNIGIKKECIIKVPEVDENGSSDFVTVIGENNIGKSSILEALRLFLP 58


>gi|291531541|emb|CBK97126.1| hypothetical protein EUS_21080 [Eubacterium siraeum 70/3]
          Length = 420

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 66/398 (16%), Positives = 127/398 (31%), Gaps = 67/398 (16%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +KI  L I   +   +++L        I  G N  GKT++L+AI++   G    R   + 
Sbjct: 3   VKISSLEIENVKRVKAVQLTPAENGLMIIGGKNNQGKTSVLDAIAWALGGD---RLKPSQ 59

Query: 64  VTRIGS--PSFFSTFAR--VEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
             R GS  P          ++ +    + ++K+   D        +N+ V +   +L K 
Sbjct: 60  AVREGSVIPPHMEVTLSNGIKVVRSGNNSTLKVIDPDGNKGGQQLLNEFVEQFALDLPKF 119

Query: 120 LRISWLVPSMDRIFSGLSMERRRFLDRM----------VFAI---DPRHRRRMIDF---- 162
           L  S    +   +      ++   L+            +  I     ++ + M  F    
Sbjct: 120 LDRSSKEKADTLLRIIGVGDKLYELETEEQKLYNQRHTIGQIADQKKKYAKEMTVFADAP 179

Query: 163 ------ERLMRGRNRLLTE---GYFDSSWCSSIEA--QMAELGVKINIARVEMINALSSL 211
                   L+R +  +L                +   ++A    +   AR+E   A +  
Sbjct: 180 KEFVSATELIRQQQDILARNGENQRKRQLREQYDRELELARKAYEEAQARLETATANAET 239

Query: 212 IM---EYVQKENFPHIKLSLTGF------LDGKFDQSFCALKEEYAK----KLFDGRKMD 258
                E +  E+   ++ S+         +    D+    L  E  K    +L +  +  
Sbjct: 240 AHRDAEDLADESTAELEQSIADIEQINAKVRANLDREKAELDAEAYKTQYIQLTEEIQSV 299

Query: 259 SMSRRTLI--------GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
             ++  L+        G    +  + Y         GS  EQ      + +A A  I   
Sbjct: 300 RKAKTDLLDGADLPLEGLSVDNGELTYNGFKWDNMSGS--EQ------LKVATA--IVRK 349

Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
                  +L +    +D D  N   R +   G Q   T
Sbjct: 350 LNPNCGFVLIDKLEQMDTDTLNDFGRWLESEGLQAIAT 387


>gi|261343370|ref|ZP_05971015.1| RecF protein [Providencia rustigianii DSM 4541]
 gi|282568509|gb|EFB74044.1| RecF protein [Providencia rustigianii DSM 4541]
          Length = 554

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          + ++ + I  FR    L L  +   T+ +G+N  GK+++L+A+
Sbjct: 1  MYLERVEIYGFRGINRLSLQLNNN-TVLIGENSWGKSSLLDAL 42


>gi|254465577|ref|ZP_05078988.1| RecF/RecN/SMC N terminal domain protein [Rhodobacterales bacterium
           Y4I]
 gi|206686485|gb|EDZ46967.1| RecF/RecN/SMC N terminal domain protein [Rhodobacterales bacterium
           Y4I]
          Length = 687

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASY-ADVT 65
           +  + +  F+     ++      TI VG NG GK+++L+A+ + +    +       ++ 
Sbjct: 127 LTGITVRGFKAAKEAKIPLGD-VTILVGPNGCGKSSVLQAVHWAARAASYVLPKNQKEMI 185

Query: 66  RIG 68
              
Sbjct: 186 SFE 188


>gi|254439272|ref|ZP_05052766.1| hypothetical protein OA307_4142 [Octadecabacter antarcticus 307]
 gi|198254718|gb|EDY79032.1| hypothetical protein OA307_4142 [Octadecabacter antarcticus 307]
          Length = 627

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +I  + I +F+    L L      T  VG N  GK+++L+AI  
Sbjct: 5  QITNVTIKDFKRIVDLTLDLAP-ITALVGGNTSGKSSVLQAIQL 47


>gi|167767198|ref|ZP_02439251.1| hypothetical protein CLOSS21_01717 [Clostridium sp. SS2/1]
 gi|167711173|gb|EDS21752.1| hypothetical protein CLOSS21_01717 [Clostridium sp. SS2/1]
 gi|291559477|emb|CBL38277.1| Predicted ATPase [butyrate-producing bacterium SSC/2]
          Length = 236

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISF 49
          L F      FVG+NG GK+ +LEAI+ 
Sbjct: 34 LEFQNSINFFVGENGSGKSTLLEAIAI 60


>gi|149052578|gb|EDM04395.1| RAD50 homolog (S. cerevisiae) [Rattus norvegicus]
          Length = 1312

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIISFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|303232675|ref|ZP_07319360.1| DNA repair protein RecN [Atopobium vaginae PB189-T1-4]
 gi|302481161|gb|EFL44236.1| DNA repair protein RecN [Atopobium vaginae PB189-T1-4]
          Length = 587

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          I  + ++             +  T+  G+ G GKT +L AIS L   +     +     R
Sbjct: 4  IDEIVVTNVALIRHASFQPSSGLTVLTGETGAGKTALLSAISLLIGQK-----ADVSRIR 58

Query: 67 IGSPSFFSTFARVEGMEGLAD 87
           G+ +     AR+ G+    D
Sbjct: 59 EGADALC-VEARLYGVAPARD 78


>gi|262381595|ref|ZP_06074733.1| DNA sulfur modification protein DndD [Bacteroides sp. 2_1_33B]
 gi|262296772|gb|EEY84702.1| DNA sulfur modification protein DndD [Bacteroides sp. 2_1_33B]
          Length = 708

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 5  IKIKFLNISEFRNYAS---LRLVFDAQHTIFV--GDNGVGKTNILEAISFLSPGR 54
          + IK + ++ FR Y     + L+      + V  G NG GKT  L ++ +   G+
Sbjct: 1  MYIKEIELNNFRIYKGKNVISLLPSDDKNVIVISGKNGFGKTTFLMSLVWCLYGK 55


>gi|257092136|ref|YP_003165777.1| DNA repair protein RecN [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
 gi|257044660|gb|ACV33848.1| DNA repair protein RecN [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 551

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 64/201 (31%), Gaps = 37/201 (18%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I +F     L L F A      G+ G GK+ +++A++F    R     + + + R
Sbjct: 2   LCRLTIRDFVLVDRLELEFQAGFGTLTGETGAGKSILVDALAFALGER-----ADSSLIR 56

Query: 67  IGSPSF-FSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
            GS     +    +E     ++  +  +   +  +   ++ D   R              
Sbjct: 57  TGSERAEVTAEFALERSPEASEWLLAHDMDSEGGLLLRRLVDANGRSRAY---------- 106

Query: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185
                   +G           +           ++D     +  ++ L  G    +   +
Sbjct: 107 -------VNGSP---------VTVQQLREVAEALVDIHG--QHAHQSLMRGEAQRALLDA 148

Query: 186 ---IEAQMAELGVKINIARVE 203
              ++  +AE+G    + R  
Sbjct: 149 HARLDPLLAEVGKAWRVWRAA 169


>gi|195119820|ref|XP_002004427.1| GI19621 [Drosophila mojavensis]
 gi|193909495|gb|EDW08362.1| GI19621 [Drosophila mojavensis]
          Length = 1312

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 7  IKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ L+I   R++         + F +  T+ +G NG GKT I+E + +   G
Sbjct: 4  IEKLSIQGVRSFGVNAEDMQSITFSSPITLILGQNGCGKTTIIECLKYALTG 55


>gi|54792259|emb|CAF18543.1| RAD50 protein [Gallus gallus]
          Length = 1250

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          KI+ ++I   R++         + F    TI VG NG GKT I+E + ++S G
Sbjct: 3  KIEKMSILGVRSFGVEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTG 55


>gi|304397049|ref|ZP_07378928.1| conserved hypothetical protein [Pantoea sp. aB]
 gi|304355198|gb|EFM19566.1| conserved hypothetical protein [Pantoea sp. aB]
          Length = 545

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + ++ ++I  FR    L L      T+ +G+N  GK+++L+ +S L
Sbjct: 1  MILEHIDIRGFRGINKLSLPLT-HTTLLIGENAWGKSSLLDVMSLL 45


>gi|288817782|ref|YP_003432129.1| ABC-type cobalt transport system ATPase component [Hydrogenobacter
           thermophilus TK-6]
 gi|288787181|dbj|BAI68928.1| ABC-type cobalt transport system ATPase component [Hydrogenobacter
           thermophilus TK-6]
 gi|308751380|gb|ADO44863.1| ABC transporter related protein [Hydrogenobacter thermophilus TK-6]
          Length = 257

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 13/122 (10%)

Query: 241 CALKEEYAKKLFD-GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGI 299
             + +E A  L   G +   +  R L    R DL +++ DK      G   ++  +   +
Sbjct: 97  PTVYDELAFSLRQLGFEEKQVEERVLHWADRFDL-IEHLDKPPFKLSGGQKQKLCLACLL 155

Query: 300 FLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
            L              ILLLDE +A+LD      L  ++ D+     ++  + S+   L 
Sbjct: 156 VL-----------EPKILLLDEPTANLDPRTTGWLIDLLYDLNITTIVSTHNLSLVPELG 204

Query: 360 ET 361
           + 
Sbjct: 205 DR 206


>gi|227548530|ref|ZP_03978579.1| ABC superfamily ATP binding cassette transporter [Corynebacterium
          lipophiloflavum DSM 44291]
 gi|227079359|gb|EEI17322.1| ABC superfamily ATP binding cassette transporter [Corynebacterium
          lipophiloflavum DSM 44291]
          Length = 235

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 16 RNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          R+     +   +  TIF GDNG GK+ ++EAI+ 
Sbjct: 26 RSLIDAPVQLTSPITIFTGDNGAGKSTLIEAIAV 59


>gi|261345459|ref|ZP_05973103.1| DNA repair protein RecN [Providencia rustigianii DSM 4541]
 gi|282566506|gb|EFB72041.1| DNA repair protein RecN [Providencia rustigianii DSM 4541]
          Length = 553

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 41/239 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ F     L + F +  T   G+ G GK+  ++A+      RG      A++ R
Sbjct: 2   LTQLTINNFAIVRELEIDFRSGMTTITGETGAGKSIAIDALGLCLGNRG-----EANMVR 56

Query: 67  IGSPSF-------------FSTFARVEGMEGLADISIKLETRDDRSVRCLQIND--VVIR 111
            GS                 + +     ++   +  ++     D   R   IN   V + 
Sbjct: 57  PGSQRADLCARFSLADAQMAANWLVEHQLDNHNECLLRRTIAVDGRSRGF-INGVSVPLS 115

Query: 112 VVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNR 171
            + EL   L       +   +                            + + L+     
Sbjct: 116 QLRELGALLIQIHGQHAHQLLLDNG--------------HQQSLLDAYANQQELLSQMKH 161

Query: 172 LLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFPHIKLSLT 229
              + +      +  + QM     +   +R ++++     + E++  +  F  I     
Sbjct: 162 TWQKWHESCQQLAVFQKQM-----QTRESRKQLLDYHLKELTEFLPVQGEFEEIDQEYK 215


>gi|210622088|ref|ZP_03292981.1| hypothetical protein CLOHIR_00927 [Clostridium hiranonis DSM 13275]
 gi|210154421|gb|EEA85427.1| hypothetical protein CLOHIR_00927 [Clostridium hiranonis DSM 13275]
          Length = 416

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 68/228 (29%), Gaps = 26/228 (11%)

Query: 28  QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT--------RIGSPSFFSTFARV 79
           + T   G NG GK+++LE+  FL+     + +   D           I  P+ F      
Sbjct: 43  KATAIYGANGSGKSSLLESCLFLTSLVSNKPSQPGDKILVIPHALSAIDEPTEFLIHFER 102

Query: 80  EGMEGLADISIKLET---------RDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSMD 130
           +G+  +  IS+  +          +  R  +             +    L  +      +
Sbjct: 103 KGIRYVYGISVTEDRVEKEFLYHFKVGRKAKIFDRAGEEYTFGTKYKSDLNKALSFQKEN 162

Query: 131 RIFSGLSMERRR---------FLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSS 181
           R+F   +              F    +    P       ++   M  +N    +    + 
Sbjct: 163 RVFLNTAANFTNNEDITNAFLFFKEDLVVNSPSFMNNWREYSFNMINKNPEFKKKVVTAF 222

Query: 182 WCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLT 229
               I+ +  +          E++  + + I E ++        LSL 
Sbjct: 223 NNLGIDIKDIKTESFNIPLHDELVENIPADIKEIIKSSMGEEKTLSLK 270


>gi|330448659|ref|ZP_08312307.1| recF/RecN/SMC N terminal domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492850|dbj|GAA06804.1| recF/RecN/SMC N terminal domain protein [Photobacterium
          leiognathi subsp. mandapamensis svers.1.1.]
          Length = 246

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 18 YASLR-LVFDAQHTIFVGDNGVGKTNILEAISF 49
             L  + F    T FVG+NG GK+ ++EAI+ 
Sbjct: 32 IKELDFIEFHPDVTFFVGENGAGKSTLIEAIAV 64


>gi|317495591|ref|ZP_07953959.1| hypothetical protein HMPREF0432_00561 [Gemella moribillum M424]
 gi|316914405|gb|EFV35883.1| hypothetical protein HMPREF0432_00561 [Gemella moribillum M424]
          Length = 696

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          + ++ + +  FR      L F  + ++ +G N  GKT+ L
Sbjct: 1  MILRKMKVKNFRLLKDFELEFKDELSLVIGKNNCGKTSAL 40


>gi|229581998|ref|YP_002840397.1| ABC transporter related [Sulfolobus islandicus Y.N.15.51]
 gi|228012714|gb|ACP48475.1| ABC transporter related [Sulfolobus islandicus Y.N.15.51]
          Length = 232

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 22/120 (18%)

Query: 255 RKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFA 314
           R+ +       + P   +L      K       S G+Q+ V +   LA            
Sbjct: 121 RRREKAEEILSMIPGMLEL------KNKKPNELSGGQQQRVAIARALA---------NDP 165

Query: 315 PILLLDEISAHLDEDKRNALFRIVTDIGSQ----IFMTGTDKSVFDSLNETAKFMRISNH 370
            ILL DE +A+LD     A+  ++  +  Q    + M   D    D +    + + I + 
Sbjct: 166 KILLADEPTANLDSKTGEAIVELIKKLNEQRGVTVVMATYDP---DMMKYADRIIYIRDG 222


>gi|218247196|ref|YP_002372567.1| DNA sulfur modification protein DndD [Cyanothece sp. PCC 8801]
 gi|218167674|gb|ACK66411.1| DNA sulfur modification protein DndD [Cyanothece sp. PCC 8801]
          Length = 661

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 68/223 (30%), Gaps = 23/223 (10%)

Query: 133 FSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAE 192
            +    + ++  D  +      + +   D++            G            ++ +
Sbjct: 423 VAASPEDYQKLSD-ALTQAQKDYGKCQRDYD-------GEEQRGKQIEKLIQQTINELKK 474

Query: 193 LGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLF 252
              ++   + +    L        Q       +L+L      K ++    + E +   L 
Sbjct: 475 YSEEVIDRQND--EHLIKSAARVQQTLTLFKERLTLK-----KLNKLEGEVTECFRYLLH 527

Query: 253 DGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTG 312
                D + R  +     S  + D   + +     S GE++++ +    A    ++  +G
Sbjct: 528 KS---DLVHRVAIDTHTFSISLFDPQGQPVAKHRLSAGEKQLLAI----AFLWGLARVSG 580

Query: 313 FAPILLLDEISAHLDEDKRNALFR-IVTDIGSQIFMTGTDKSV 354
               + +D     LD   R+ L          Q+ +  TD  +
Sbjct: 581 RNLPIAIDTPLGRLDSSHRSNLVERYFPTASHQVILLSTDTEI 623


>gi|148508244|gb|ABQ76030.1| predicted ATPase invovled in DNA repair [uncultured haloarchaeon]
          Length = 667

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 5  IKIKFLNISEFRN-YASLRLVFD----AQHTIFVGDNGVGKTNIL 44
          +++K L +  FR  Y +  + F        T+  GDNG GKT +L
Sbjct: 1  MELKRLEVENFRQFYGTQEVSFSLEESNNVTVVHGDNGAGKTTLL 45


>gi|117620655|ref|YP_857490.1| recombination and repair protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562062|gb|ABK39010.1| DNA repair protein RecN [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 554

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 61/203 (30%), Gaps = 19/203 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF----RRASYA 62
           +  L ++ F     L L      T   G+ G GK+  ++A+      R      R  S  
Sbjct: 2   LTQLTVNNFAIVKFLELDLQPGMTCITGETGAGKSIAIDALGLCLGERAEAGMVRPDSDK 61

Query: 63  -DV-TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCL-QINDVVI--RVVDELN 117
            +V  R       +  A +   E   +    +        R    IN V +    +  L 
Sbjct: 62  SEVSARFLLDGNPAARAWLATNELENEGECIVRRVISAEGRSRSYINGVPVPLTQLKNLG 121

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI-----DPRHRRRMIDFERLMRGRNRL 172
           + L       +   +       +   LD             RH ++    +  +   NRL
Sbjct: 122 QLLVNVHGQHAHQMLLK--PDYQLALLDGYAGHHLLLDEVRRHYQQWRQLQNEL---NRL 176

Query: 173 LTEGYFDSSWCSSIEAQMAELGV 195
             E     +    IE Q+ EL  
Sbjct: 177 KAEQQQREARRQLIEYQVQELDE 199


>gi|90407987|ref|ZP_01216160.1| ABC-type transporter, ATPase component [Psychromonas sp. CNPT3]
 gi|90310925|gb|EAS39037.1| ABC-type transporter, ATPase component [Psychromonas sp. CNPT3]
          Length = 220

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ---IFMTGTDKSVFDSLNETA 362
           ++        +LL DE +A+LD+D    +  ++  +  Q   + +  T   +F  L   A
Sbjct: 151 IVRALVNSPKLLLADEPTANLDKDNSIIIINLLKSLNQQGVTVLI-ATHDPLFSELLPNA 209

Query: 363 KFMRISNHQ 371
           +   I   Q
Sbjct: 210 QVHYIDQGQ 218


>gi|330889441|gb|EGH22102.1| hypothetical protein PSYMO_11565 [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 932

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 6   KIKFLNISEFRNY-------ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
            + +L +  FR +           + F     IF   NG GK+++ EAI   + G
Sbjct: 58  ALDYLRVRNFRGFGEFGADDKGTFIRFSKLKNIFYAPNGGGKSSLCEAIEICTTG 112



 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 82/262 (31%), Gaps = 48/262 (18%)

Query: 97  DRSVRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHR 156
           +R  R +   +V    +D L +HL+                  +R+F   +         
Sbjct: 462 ERKQREVDQAEVQAARLDALIEHLKQV------------DESLKRQF--DLKTQALTGFT 507

Query: 157 RRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYV 216
                   L+  R  LL +   +S +   ++   AE        R    + L   +    
Sbjct: 508 DANDRMLALIGQRTALLNDSVDNSHFNQLLKDLEAEY-------RTLYGDLLGYKLELEK 560

Query: 217 QKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVD 276
            +      K +         D     ++    ++L +  +                + + 
Sbjct: 561 ARITGIEAKAAEYYRAINNHDDDHEQIETLTFERLTESYR----------------IKIT 604

Query: 277 YCDKAITIAHG--STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
             D ++  A    S G  + + + I LA A          P+++ D++   +D D R+ +
Sbjct: 605 NVDGSLLDAFAVLSEGHLRALGLSILLAMAE-----KNNFPLIVFDDVVNAIDTDHRSNI 659

Query: 335 FRIVTD----IGSQIFMTGTDK 352
             +  +       Q+ +T  D+
Sbjct: 660 IDLFFNDTYLRRIQMVVTTHDR 681


>gi|325117816|emb|CBZ53367.1| putative chromosome condensation protein [Neospora caninum
           Liverpool]
          Length = 1574

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 4   RIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
           R+ I+ + +  F++Y        F  + T  VG NG GK+N+++A+ F
Sbjct: 141 RLMIERVVLENFKSYGKKKTIGPFHKRFTAIVGPNGSGKSNVIDAMLF 188


>gi|317508834|ref|ZP_07966475.1| SMC protein [Segniliparus rugosus ATCC BAA-974]
 gi|316252858|gb|EFV12287.1| SMC protein [Segniliparus rugosus ATCC BAA-974]
          Length = 258

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 23 LVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          L      T  VG+NG GK+ ++EAI+  +
Sbjct: 46 LPLAPGVTFLVGENGSGKSTLVEAIAVAA 74


>gi|253578972|ref|ZP_04856243.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849915|gb|EES77874.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 605

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 11/96 (11%)

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           +   D    I H S G++K V +                  +LLLDE + HLD +    L
Sbjct: 109 LGITDHEEKIDHLSGGQKKRVALA---------RTLVNPCDVLLLDEPTNHLDNEMVTWL 159

Query: 335 FRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
              +      + M   D+   D +    K + IS+ 
Sbjct: 160 EDFLRSFKGVVIMVTHDRYFLDRVTN--KILEISHG 193


>gi|225551566|ref|ZP_03772512.1| p115 protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
 gi|225379381|gb|EEH01746.1| p115 protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
          Length = 840

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 83/267 (31%), Gaps = 43/267 (16%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K +    F+++   +   F    T  VG NG GK+NI++A+ ++      +  R     
Sbjct: 4   LKKIEAQGFKSFGEPIVAEFKHPMTGIVGANGTGKSNIVDALKWVIGDQSLKSMRAHK-N 62

Query: 63  DVTRIGSPSFFSTFA--------RVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRV 112
           ++   G                  V  +       IK+        +     IND ++R 
Sbjct: 63  ELLFSGGRYAPKAHIARVNLYFNNVNNVLYTEHKEIKISRVLNTKTNENTYYINDEIVR- 121

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S            +ERR+  +             +  + 
Sbjct: 122 LKDITDMFLDSGLSKGSLGIISQGAVSWFAEAKPIERRKMFEE---------ASGIGRYS 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
           +  +     L     +      +   +  L  ++       +   +    EY Q K+   
Sbjct: 173 KRKQEALSSLERANEN---LDRLNDIVVNLKKELTK-----LEKQAQRFNEYKQIKDELT 224

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAK 249
            ++L +       + ++   +  E  +
Sbjct: 225 KLELVILVRDIVHWQKNLEQITNELKE 251


>gi|146340944|ref|YP_001205992.1| putative ATP-binding protein [Bradyrhizobium sp. ORS278]
 gi|146193750|emb|CAL77767.1| conserved hypothetical protein; putative ATP-binding protein
          [Bradyrhizobium sp. ORS278]
          Length = 256

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 18 YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +    L F +  TI VG+NG GK+ +LE I+ L+
Sbjct: 39 HDEFELGFTSAITIIVGENGTGKSTLLEGIAALA 72


>gi|145224891|ref|YP_001135569.1| hypothetical protein Mflv_4312 [Mycobacterium gilvum PYR-GCK]
 gi|315445220|ref|YP_004078099.1| ATPase [Mycobacterium sp. Spyr1]
 gi|145217377|gb|ABP46781.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
 gi|315263523|gb|ADU00265.1| predicted ATPase [Mycobacterium sp. Spyr1]
          Length = 388

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 12/139 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS-PGRGFRRASYADVT 65
           ++ + I  +R+   L L    + T+  G NG GK+++  A+  L+  GRG       +V 
Sbjct: 2   LETVAIRGYRSLRDLVLPL-RRLTVITGANGTGKSSLYRALRLLADCGRG-------EVI 53

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125
              +       A   G E L         +     R + I    +    +   +L    L
Sbjct: 54  GSFAREGGVASALWAGPEHLGGARRTGTAQGGPRSRSVSI---ELGYAGDDFGYLIDLGL 110

Query: 126 VPSMDRIFSGLSMERRRFL 144
             + +  F      +R  +
Sbjct: 111 PQATETAFGRDPEIKRELV 129


>gi|255505613|ref|ZP_05347185.3| putative RecF protein [Bryantella formatexigens DSM 14469]
 gi|255266923|gb|EET60128.1| putative RecF protein [Bryantella formatexigens DSM 14469]
          Length = 445

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 4  RIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
           +KI+ + I  F+N +++++ FD + T  V  N  GK+N+L AI F
Sbjct: 17 DMKIQAVLIDGFKNLSNVKISFD-KITALVALNNFGKSNVLAAIDF 61


>gi|240144571|ref|ZP_04743172.1| ABC transporter, ATP-binding protein [Roseburia intestinalis
          L1-82]
 gi|257203386|gb|EEV01671.1| ABC transporter, ATP-binding protein [Roseburia intestinalis
          L1-82]
          Length = 238

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 12 ISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISF 49
          +   R +  +  L F+   T FVG+NG GK+ +LEA++ 
Sbjct: 22 LKGIRAFKGVEKLDFNKPITFFVGENGSGKSTLLEALAV 60


>gi|254516512|ref|ZP_05128571.1| putative RecF/RecN/SMC N terminal domain [gamma proteobacterium
          NOR5-3]
 gi|219674935|gb|EED31302.1| putative RecF/RecN/SMC N terminal domain [gamma proteobacterium
          NOR5-3]
          Length = 673

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 5  IKIKFLNISEFR-----NYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          + +K L +  FR     NY           T+  G+NGVGKT IL AI + 
Sbjct: 1  MMLKNLMMVNFRQFYGENYLEFSTDRRKNITLVHGENGVGKTTILNAILWC 51


>gi|218532545|ref|YP_002423361.1| hypothetical protein Mchl_4659 [Methylobacterium chloromethanicum
          CM4]
 gi|218524848|gb|ACK85433.1| conserved hypothetical protein [Methylobacterium chloromethanicum
          CM4]
          Length = 385

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
           ++ +  + +R+  ++R       ++FVG N  GKTN+  A+  L     
Sbjct: 3  AVREIEAAGYRSLKTIRFPVGP-LSVFVGGNATGKTNLYRALGLLQTAAS 51


>gi|330994413|ref|ZP_08318339.1| DNA repair protein recN [Gluconacetobacter sp. SXCC-1]
 gi|329758539|gb|EGG75057.1| DNA repair protein recN [Gluconacetobacter sp. SXCC-1]
          Length = 573

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I +      L L F    T+  G+ G GK+ +L++   L    G R +  A + R
Sbjct: 2  LTQLSIRDVVLIEKLDLAFPPGLTVLTGETGAGKSILLDS---LGLALGERAS--ASLVR 56

Query: 67 IGSPSF 72
           G    
Sbjct: 57 AGCEQA 62


>gi|300121231|emb|CBK21612.2| unnamed protein product [Blastocystis hominis]
          Length = 206

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  + I   R++       + F    TI VGDNG GKT I+E +     G
Sbjct: 4  ISKMTIQGIRSFSPREEKTIKFLKPLTIIVGDNGCGKTTIIECLKAGCTG 53


>gi|281334663|gb|ADA61747.1| hypothetical protein SAP045A_015 [Staphylococcus epidermidis]
          Length = 847

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 70/206 (33%), Gaps = 18/206 (8%)

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
             +     + E+++   N L+ +   DS      E Q+ E      +   +++  +   I
Sbjct: 472 KGYNFDYNEIEKVINNLNNLIEDLDEDSVKKEIEELQIKENEFNDKLKVEKLLPKIEDFI 531

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK-------KLFDGRKMDSMSRRTL 265
                 +N   IK++       +       + + Y +       KL      +   R   
Sbjct: 532 NNKEWVDNASKIKINTRSITSKQNSLFSKYVTDTYIETFNNECQKLNANFSAEIKQRG-R 590

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
            G   + L +    +   I   S GEQ+ + +  FL+     ++       ++ D+  + 
Sbjct: 591 KGTTLNKLTIQ---EKKPIDILSEGEQRAIALANFLSE----TSMNKNNVCIVFDDPVSS 643

Query: 326 LDEDKRNALFRIVTDIGSQ---IFMT 348
           LD  ++  +   + D   Q   +  T
Sbjct: 644 LDHKRKEIIADRLIDEAQQKQVVIFT 669


>gi|257455824|ref|ZP_05621050.1| ABC transporter ATP-binding protein YojI [Enhydrobacter aerosaccus
           SK60]
 gi|257446838|gb|EEV21855.1| ABC transporter ATP-binding protein YojI [Enhydrobacter aerosaccus
           SK60]
          Length = 556

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 275 VDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNAL 334
           V   D  ++    S G++K + + + +A             ILLLDE +A  D   R   
Sbjct: 445 VSVTDNQLSATELSQGQRKRLAMLLAVAE---------EKSILLLDEWAADQDPAYRRVF 495

Query: 335 FR----IVTDIGSQIFMTGTDKSVFDS 357
           +     ++  +G  +F+   D S F+ 
Sbjct: 496 YHTIIPMLQKMGKTLFIISHDDSYFEK 522


>gi|217076884|ref|YP_002334600.1| hypothetical protein THA_797 [Thermosipho africanus TCF52B]
 gi|217036737|gb|ACJ75259.1| conserved hypothetical protein [Thermosipho africanus TCF52B]
          Length = 818

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          + IK + I+ F    +  + F     +  G N  GKT +
Sbjct: 1  MLIKKVKINGFGKLKNKEIKFKPGLNVIFGPNSSGKTTL 39


>gi|198274688|ref|ZP_03207220.1| hypothetical protein BACPLE_00844 [Bacteroides plebeius DSM 17135]
 gi|198272135|gb|EDY96404.1| hypothetical protein BACPLE_00844 [Bacteroides plebeius DSM 17135]
          Length = 555

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 68/206 (33%), Gaps = 20/206 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL----SPGRGFRRASYA 62
           ++ + I  +     L + F +  ++  G+ G GK+ IL AI  L    +  +  ++ +  
Sbjct: 2   LQSIFIQNYALIDKLDIDFTSGFSVITGETGAGKSIILGAIGLLLGQRADVKSIKKGASK 61

Query: 63  -------DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDE 115
                   +   G   FF      +      +  ++ E   +   R   IND    +   
Sbjct: 62  CIVEATFRIANYGMEPFFQ---ENDIEFEPDECILRREVSANGKSRAF-INDTPASLAQM 117

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF--AIDPRHRRRMIDFERLMRGRN--- 170
                ++  +      +       +   LD +         ++   + ++++ +  +   
Sbjct: 118 KMLGEKLIDVHSQHQNLLLNKEGFQLNILDILAQDEQALSAYQSVYLSYKKVAKELDDFI 177

Query: 171 RLLTEGYFDSSWCSSIEAQMAELGVK 196
               +   D  +      Q+ E G+K
Sbjct: 178 AQAEKSRQDEDYIRFQLEQLEEAGLK 203


>gi|195867740|ref|ZP_03079741.1| p115 protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
 gi|195660595|gb|EDX53851.1| p115 protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
          Length = 981

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 83/267 (31%), Gaps = 43/267 (16%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K +    F+++   +   F    T  VG NG GK+NI++A+ ++      +  R     
Sbjct: 4   LKKIEAQGFKSFGEPIVAEFKHPMTGIVGANGTGKSNIVDALKWVIGDQSLKSIRAHK-N 62

Query: 63  DVTRIGSPSFFSTFA--------RVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRV 112
           ++   G                  V  +       IK+        +     IND ++R 
Sbjct: 63  ELLFSGGRYAPKAHIARVNLYFNNVNNVLYTEHKEIKISRVLNTKTNENTYYINDEIVR- 121

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S            +ERR+  +             +  + 
Sbjct: 122 LKDITDMFLDSGLSKGSLGIISQGAVSWFAEAKPIERRKMFEE---------ASGIGRYS 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
           +  +     L     +      +   +  L  ++       +   +    EY Q K+   
Sbjct: 173 KRKQEALSSLERANEN---LDRLNDIVVNLKKELTK-----LEKQAQRFNEYKQIKDELT 224

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAK 249
            ++L +       + ++   +  E  +
Sbjct: 225 KLELVILVRDIVHWQKNLEQITNELKE 251


>gi|110598013|ref|ZP_01386293.1| Cyclic peptide transporter [Chlorobium ferrooxidans DSM 13031]
 gi|110340361|gb|EAT58853.1| Cyclic peptide transporter [Chlorobium ferrooxidans DSM 13031]
          Length = 544

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 14/155 (9%)

Query: 221 FPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDK 280
             H +L +    D +   S        +++L    + D    R ++        V   + 
Sbjct: 392 ADHAELRIGQMQDYRNQFSAIFSDFHLSRRLASIEEPDQEKIRLMLERFGMQEKVSVVNG 451

Query: 281 AITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT- 339
           + +    S+G++K   + + +A            PI++LDE +A  D   R   +  +  
Sbjct: 452 SFSTIDLSSGQRKR--LALIVAELE-------DKPIIVLDEWAADQDPHFRRIFYEELLP 502

Query: 340 --DIGSQIFMTGTDKSVFDSLNETAKFMRISNHQA 372
                 +I +  T    +  L +  +  R++  Q 
Sbjct: 503 DMKTRGKIIIAVTHDDRWFHLAD--RMYRMNEGQI 535


>gi|326928755|ref|XP_003210540.1| PREDICTED: DNA repair protein RAD50-like [Meleagris gallopavo]
          Length = 1312

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          KI+ ++I   R++         + F    TI VG NG GKT I+E + ++S G
Sbjct: 3  KIEKMSILGVRSFGVEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTG 55


>gi|325003581|ref|ZP_08124693.1| abc transporter related protein [Pseudonocardia sp. P1]
          Length = 290

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 14/88 (15%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQ 344
           S G+++ + + +  A         G   ++LLDE +  LD + R AL+  V +    G  
Sbjct: 130 SGGQRRRLALALAFA---------GRPRLVLLDEPTTGLDVEGRRALWDTVREFHAGGGT 180

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQA 372
           + +T       ++L E  + + ++  + 
Sbjct: 181 VLLTTHYLDEIETLAE--RVVVLAQGRI 206


>gi|300311480|ref|YP_003775572.1| chromosome segregation SMC ATPase [Herbaspirillum seropedicae
          SmR1]
 gi|300074265|gb|ADJ63664.1| chromosome segregation SMC ATPase protein [Herbaspirillum
          seropedicae SmR1]
          Length = 1176

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + +S F+++          Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1  MRLTSIKLSGFKSFVEPTHFQVPGQLVGVVGPNGCGKSNIIDAVRWVLGESKASELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|242241782|ref|ZP_04796227.1| conserved hypothetical protein [Staphylococcus epidermidis W23144]
 gi|242234759|gb|EES37070.1| conserved hypothetical protein [Staphylococcus epidermidis W23144]
          Length = 847

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 70/206 (33%), Gaps = 18/206 (8%)

Query: 153 PRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLI 212
             +     + E+++   N L+ +   DS      E Q+ E      +   +++  +   I
Sbjct: 472 KGYNFDYNEIEKVINNLNNLIEDLDEDSVKKEIEELQIKENEFNDKLKVEKLLPKIEDFI 531

Query: 213 MEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK-------KLFDGRKMDSMSRRTL 265
                 +N   IK++       +       + + Y +       KL      +   R   
Sbjct: 532 NNKEWVDNASKIKINTRSITSKQNSLFSKYVTDTYIETFNNECQKLNANFSAEIKQRG-R 590

Query: 266 IGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
            G   + L +    +   I   S GEQ+ + +  FL+     ++       ++ D+  + 
Sbjct: 591 KGTTLNKLTIQ---EKKPIDILSEGEQRAIALANFLSE----TSMNKNNVCIVFDDPVSS 643

Query: 326 LDEDKRNALFRIVTDIGSQ---IFMT 348
           LD  ++  +   + D   Q   +  T
Sbjct: 644 LDHKRKEIIADRLIDEAQQKQVVIFT 669


>gi|168259685|ref|ZP_02681658.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350839|gb|EDZ37470.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 271

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 18/91 (19%)

Query: 288 STGEQKVVLVG--IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ- 344
           S G++K V +   + L  AR +          LLDE +A LD   R  +  I+  I +Q 
Sbjct: 138 SHGQKKRVAIAGALVL-QARYL----------LLDEPTAGLDPAGRTQMLAIIRRIVAQG 186

Query: 345 --IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             + ++  D  +   +++    +R    Q L
Sbjct: 187 NHVIISSHDIDLIYEISDAVYVLR--QGQIL 215


>gi|149726377|ref|XP_001504492.1| PREDICTED: similar to RAD50 homolog isoform 1 (predicted) isoform
          1 [Equus caballus]
          Length = 1312

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|134094544|ref|YP_001099619.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans]
 gi|133738447|emb|CAL61492.1| putative ABC transporter, ATP-binding protein [Herminiimonas
           arsenicoxydans]
          Length = 656

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 62/165 (37%), Gaps = 25/165 (15%)

Query: 209 SSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGP 268
           S   + YV +E  P  + ++   +DG  D +   L+EE A   F   + D+    TLIG 
Sbjct: 53  SKWRVAYVAQETPPLERSAIDYAIDG--DVTLRRLEEELA---FLESEPDTADNGTLIG- 106

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR---------------LISNTTGF 313
              DL     D        S GEQ ++ +G  +A                  L       
Sbjct: 107 ---DLYSALADADAYTVR-SRGEQLLLGLGFTMAQMEQPVASFSGGWRMRLNLAQALMCP 162

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSL 358
           + +LLLDE + HLD D    L   +      + +   D+   D +
Sbjct: 163 SDLLLLDEPTNHLDLDAIIWLEDWLKRYPGTLLVISHDRDFLDGV 207


>gi|254239148|ref|ZP_04932471.1| hypothetical protein PACG_05333 [Pseudomonas aeruginosa C3719]
 gi|126171079|gb|EAZ56590.1| hypothetical protein PACG_05333 [Pseudomonas aeruginosa C3719]
          Length = 387

 Score = 42.2 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L +S +R    L +    +  +  G NG GK+N+  A+  L+
Sbjct: 2  LTTLAVSNYRTLRDLVMPL-RRLNLITGANGAGKSNVYRALRLLA 45


>gi|283851420|ref|ZP_06368701.1| ABC transporter related protein [Desulfovibrio sp. FW1012B]
 gi|283573158|gb|EFC21137.1| ABC transporter related protein [Desulfovibrio sp. FW1012B]
          Length = 466

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 14/89 (15%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ--- 344
           S GE++ + +   L              +L LDE +  LD+    A+   V     Q   
Sbjct: 377 SFGEKRRLCLAAVLVA---------DPAVLCLDEPTTGLDDATMAAMAETVRGRAGQGAA 427

Query: 345 IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
           + +  T +  F ++  T + +R+ N + +
Sbjct: 428 VLV-ATHEQAFAAMAAT-RIVRLENGRIV 454


>gi|194446307|ref|YP_002041287.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197249903|ref|YP_002146977.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|194404970|gb|ACF65192.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|197213606|gb|ACH51003.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 271

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 18/91 (19%)

Query: 288 STGEQKVVLVG--IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ- 344
           S G++K V +   + L  AR +          LLDE +A LD   R  +  I+  I +Q 
Sbjct: 138 SHGQKKRVAIAGALVL-QARYL----------LLDEPTAGLDPAGRTQMLAIIRRIVAQG 186

Query: 345 --IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             + ++  D  +   +++    +R    Q L
Sbjct: 187 NHVIISSHDIDLIYEISDAVYVLR--QGQIL 215


>gi|146308553|ref|YP_001189018.1| SMC domain-containing protein [Pseudomonas mendocina ymp]
 gi|145576754|gb|ABP86286.1| SMC domain protein [Pseudomonas mendocina ymp]
          Length = 1144

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 12/94 (12%)

Query: 5  IKIKFLNISEFRNYA-SLRLVFDA------QHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
          +KI  L +    +     ++ F A            G  G GKT +L+AI      R  R
Sbjct: 1  MKILSLRLKNLNSLKGEWKIDFAAEPFAGSGLFAITGPTGAGKTTLLDAICLALYHRTPR 60

Query: 58 RASYAD-----VTRIGSPSFFSTFARVEGMEGLA 86
           ++ +      +TR  +         V+G    A
Sbjct: 61 MSTLSASGNELMTRHTADCLAEVEFEVKGQGYRA 94


>gi|67459481|ref|YP_247105.1| DNA repair protein RecN [Rickettsia felis URRWXCal2]
 gi|75536112|sp|Q4UKJ1|RECN_RICFE RecName: Full=DNA repair protein recN; AltName: Full=Recombination
           protein N
 gi|67005014|gb|AAY61940.1| DNA repair protein RecN [Rickettsia felis URRWXCal2]
          Length = 546

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 77/256 (30%), Gaps = 54/256 (21%)

Query: 9   FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
            L +  F     L + F+    +  G+ G GK+ +L+AI F    +     +  ++ + G
Sbjct: 4   SLLVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILFCLGYK-----TSNNIIKRG 58

Query: 69  SPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPS 128
                                               +N       +E+   L  +++ P 
Sbjct: 59  KDYAVVNI-------------------------IFSLN-------EEIKNFLIQNFIEPE 86

Query: 129 MDRIFS--GLSMERRRF------LDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDS 180
              +      +  R+ F      +++ +      +   +       +  N  L E     
Sbjct: 87  ELLLVKCLQKAEGRKNFFINNQVVNKAIMQQLATYLFELHG-----QNNNISLLEANTQR 141

Query: 181 SWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSF 240
               S    + +   +++    +        I E   K+N    ++    F   +  +  
Sbjct: 142 DILDSY-GNLLDFRAELSKCY-QTWQNTRKEIAEITLKQNSIDQEIDYLSFATEELTKLN 199

Query: 241 CALKEEYAKKLFDGRK 256
             + EE  +KL + RK
Sbjct: 200 IQIGEE--EKLANIRK 213


>gi|331001416|ref|ZP_08325036.1| RecF/RecN/SMC protein [Parasutterella excrementihominis YIT
          11859]
 gi|329568298|gb|EGG50109.1| RecF/RecN/SMC protein [Parasutterella excrementihominis YIT
          11859]
          Length = 549

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 6  KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNILEAISF 49
          KI+ + I  FR   SL       +  I +G    GK+ IL AI++
Sbjct: 3  KIESITIKNFRGIKSLETTSLSERLIILIGRGDSGKSTILTAINY 47


>gi|297467350|ref|XP_585794.5| PREDICTED: SMC5 protein [Bos taurus]
          Length = 1085

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 32/102 (31%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L +  F  Y    +       + +G NG GK++I+ AI     G+         V  
Sbjct: 36  LIRLTMISFXTYDVCEVSPGPHLNMIIGANGTGKSSIVCAICLGLAGKPAFMGRADKVGF 95

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
                       +E      ++ I  E    ++     IN  
Sbjct: 96  FVKRGCSKGMVEIELFRTSGNLVITREIDVAKNQSSWFINKK 137


>gi|291617890|ref|YP_003520632.1| FepC [Pantoea ananatis LMG 20103]
 gi|291152920|gb|ADD77504.1| FepC [Pantoea ananatis LMG 20103]
          Length = 267

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 18/91 (19%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GE++   +   LA             ++LLDE + HLD   R+AL  ++ + G    +
Sbjct: 150 SGGERQRAALARVLAQ---------KPQLILLDEPTNHLDPLGRHALLTLIKNKG----I 196

Query: 348 TGT----DKSVFDSLNETAKFMRISNHQALC 374
           T      D S+ D+  +    +     Q +C
Sbjct: 197 TAVAVLHDLSLIDTFADRVLILS-QGEQVVC 226


>gi|209523678|ref|ZP_03272231.1| conserved hypothetical protein [Arthrospira maxima CS-328]
 gi|209495710|gb|EDZ96012.1| conserved hypothetical protein [Arthrospira maxima CS-328]
          Length = 394

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 60/387 (15%), Positives = 130/387 (33%), Gaps = 67/387 (17%)

Query: 7   IKFLNISEFRNY----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           I  L +    +Y      L+L       + +G N  GK+N++EA+  L       +A+  
Sbjct: 6   IHSLKLRNLLSYGSDTEPLKLE---SLNVLIGRNASGKSNLIEALGIL-------KATPT 55

Query: 63  DV---TRIG---SPSFFST-----FARVEGMEGLADISIKLETRD---DRSVRCLQINDV 108
           D+    R G   S   +        A ++      + S+ L  R    +   R   I++ 
Sbjct: 56  DLTTPIRQGGGISDFLWKGTQKIPIAEIDATIAPLEGSMNLRYRISFTETGQRLEIIDEA 115

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRG 168
           +        ++    +      R     + E   +  R +       R  +   + ++  
Sbjct: 116 IENEQPYPGENEPYFFYRYQGGRPVINEATEVDGYKKRALR------RETLSPEQSVLSQ 169

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPH----I 224
           R         D      + + +A    +IN+ R   I   S       Q+ + P      
Sbjct: 170 R--------KDPDMYPQL-SYLAAQFAQINLYRNWQIGRYSEP--RLAQQTDLPSHPILE 218

Query: 225 KLSLTGFL--DGKFDQSFCALKEEYAKKLFDGRKMDS-MSRRTLIGPHRSDLIVDYCDKA 281
            +S  G +  + ++      + E   K   +  ++   +   T+    R   ++    + 
Sbjct: 219 DISNLGLVLNNLQYQLGSREIIENLQKFYEEAEELIIKIYGGTVQIFIREKDLI----QP 274

Query: 282 ITIAHGSTGEQK-VVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-- 338
           I     S G  + + L+ +      L+  T G  PIL ++E    L  D    +  ++  
Sbjct: 275 IPATRLSDGTLRYLFLMAL------LLDPTPG--PILCIEEPEIGLHPDILPMIAEMLIS 326

Query: 339 TDIGSQIFMTGTDKSVFDSLNETAKFM 365
               +Q+ +T    ++  +L   +  +
Sbjct: 327 ASERTQLIVTTHSDALISALPPESVLV 353


>gi|167749505|ref|ZP_02421632.1| hypothetical protein EUBSIR_00461 [Eubacterium siraeum DSM 15702]
 gi|167657533|gb|EDS01663.1| hypothetical protein EUBSIR_00461 [Eubacterium siraeum DSM 15702]
          Length = 420

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 62/407 (15%), Positives = 121/407 (29%), Gaps = 85/407 (20%)

Query: 5   IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           +KI  L I   +   +++L        I  G N  GKT++L+AI++   G    R   + 
Sbjct: 3   VKISSLEIENVKRVKAVQLTPAENGLMIIGGKNNQGKTSVLDAIAWALGGD---RLKPSQ 59

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRIS 123
             R GS         V        +S  ++     +   L++ D       +   +  + 
Sbjct: 60  AVREGS---------VIPPHMEVTLSNGIKVVRSGNNSTLKVIDPDGNKGGQQLLNEFVE 110

Query: 124 WLVPSMDRIFSGLSMERRRFLDRMVFAIDPRH-------------------RRRMIDFER 164
                + +     S E+   L R++   D  +                     +   + +
Sbjct: 111 QFALDLPKFLGQSSKEKADTLLRIIGVCDKLYELETEEQKLYNQRHTIGQIADQKKKYAK 170

Query: 165 -----------------LMRGRNRLLTE---GYFDSSWCSSIEA--QMAELGVKINIARV 202
                            L+R +  +L                +   ++A    +   AR+
Sbjct: 171 EMPVFADAPKEFVSATELIRQQQDILARNGENQRKRQLREQYDRELELARKAYEEAQARL 230

Query: 203 EMINALSSLIM---EYVQKENFPHIKLSLTGF------LDGKFDQSFCALKEEYAK---- 249
           E   A +       E +  E+   ++ S+         +    D+    L  E  K    
Sbjct: 231 ETATANAETAHRDAEDLADESTAELEQSIADIEQINAKVRANLDREKAELDAEAYKTQYI 290

Query: 250 KLFDGRKMDSMSRRTLI--------GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFL 301
           +L +  +    ++  L+        G    +  + Y         GS  EQ      + +
Sbjct: 291 QLTEEIQSVRKAKTDLLDGADLPLEGLSVDNGELTYNGFKWDNMSGS--EQ------LKV 342

Query: 302 AHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMT 348
           A A  I          +L +    +D D  N   R +   G Q   T
Sbjct: 343 ATA--IVRKLNPNCGFVLIDKLEQMDTDTLNDFGRWLESEGLQAIAT 387


>gi|281183185|ref|NP_001162505.1| DNA repair protein RAD50 [Papio anubis]
 gi|297295039|ref|XP_001099384.2| PREDICTED: DNA repair protein RAD50-like [Macaca mulatta]
 gi|159461525|gb|ABW96800.1| RAD50 homolog, isoform 1 (predicted) [Papio anubis]
          Length = 1311

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|95928518|ref|ZP_01311265.1| SMC protein-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135308|gb|EAT16960.1| SMC protein-like [Desulfuromonas acetoxidans DSM 684]
          Length = 934

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 59/383 (15%), Positives = 127/383 (33%), Gaps = 62/383 (16%)

Query: 15  FRNYASLRLVF--------DAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           F+N+ ++   F        D Q    VG NG GKT +L+ I  L    G R +S  D  R
Sbjct: 4   FKNFEAVHWDFWQRIAIPLDGQINTVVGPNGSGKTTLLDGIRTLL---GIRCSSERDYRR 60

Query: 67  IG-----SPSFFSTFARVEG-----------MEGLADISIKLETRDDRSVRCLQI--NDV 108
                  + S+  +  + E            +     ++ ++  +     R   I   DV
Sbjct: 61  YVRRKKMATSWLRSVVKNERTARGFAAFFPIVNSEVTLACRIRRKGGDWERHYCILEGDV 120

Query: 109 VIRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDR------MVFAIDPRHRRRMI-- 160
            I  ++E            +     +GL    R+ L         +    PR    ++  
Sbjct: 121 PIEQLEEKAGKDWFGLNEYNSLLAKAGLRGAIRKVLTLEQGATDELCTRSPREILNLVFE 180

Query: 161 DF--ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEM--INALSSLIMEYV 216
            +  ++ +    +   +          ++  +A LG++I   + ++   N       +  
Sbjct: 181 AYGEQKTLDNYQKAKDDQAIIKQELDELDRDLASLGLEIQTNQGKIDNYNEWKRKTEDVY 240

Query: 217 Q--KENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH----- 269
           +   E+ P ++L           ++   ++    +K+ + R+     R+TL   +     
Sbjct: 241 RLLTEDIPRMELMEQSEQSVGARRNIKGIR----RKVAEKRETLVERRQTLSSLNTQIQE 296

Query: 270 --RSDLIVDYCDKAITIAHGSTGEQKVVLVGIF--LAHARLISN-TTGFAPILLLDEISA 324
              S  I    + +   +  S  +Q   L  +   L     + +  T        ++ + 
Sbjct: 297 AESSKCIAQSEEDSCRASFSSVSQQ---LTSLKKTLQEKERLESLVTTRNDGFDAEDFTQ 353

Query: 325 HLDEDKR--NALFRIVTDIGSQI 345
            LD   +    +   + +I  QI
Sbjct: 354 KLDAAHQDKARIENRIKEISKQI 376


>gi|49901446|gb|AAH76425.1| Im:6906849 protein [Danio rerio]
          Length = 409

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          KI+ ++I   R++         + F +  T+ VG NG GKT I+E + +++ G
Sbjct: 3  KIEKMSILGVRSFGVEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYITSG 55


>gi|54026621|ref|YP_120863.1| hypothetical protein nfa46480 [Nocardia farcinica IFM 10152]
 gi|54018129|dbj|BAD59499.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 850

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 3   NRIKIKFLNISEFRNY---ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           + + ++ + +  FR       L L      T+ VG NG GK++  EA      G
Sbjct: 86  SDVFLRAIRVRGFRGIGAETELALRPGPGLTLVVGRNGCGKSSFAEAAELALTG 139


>gi|9954933|pdb|1F2T|B Chain B, Crystal Structure Of Atp-Free Rad50 Abc-Atpase
 gi|9954935|pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
 gi|9954937|pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
          Length = 148

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 269 HRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDE 328
           ++  L V +  K   +   S GE+  + +   LA +  ++   G   +L+LDE + +LDE
Sbjct: 40  NKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLA---GEISLLILDEPTPYLDE 96

Query: 329 DKRNALFRIVT---DIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
           ++R  L  I+        Q+ +   D+ + D+  +    + + N 
Sbjct: 97  ERRRKLITIMERYLKKIPQVILVSHDEELKDA-ADHVIRISLENG 140


>gi|113969181|ref|YP_732974.1| hypothetical protein Shewmr4_0837 [Shewanella sp. MR-4]
 gi|113883865|gb|ABI37917.1| conserved hypothetical protein [Shewanella sp. MR-4]
          Length = 644

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 7  IKFLNISEF---RNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          I  + +  F   R +  + +      T F+GDNGVGK++ILEA+
Sbjct: 2  IFSIFLRNFKIYRGWNYVPISTGDYFTAFIGDNGVGKSSILEAL 45


>gi|332284992|ref|YP_004416903.1| putative chromosome partition protein [Pusillimonas sp. T7-7]
 gi|330428945|gb|AEC20279.1| putative chromosome partition protein [Pusillimonas sp. T7-7]
          Length = 1174

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDA-QHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++  + ++ F+++    ++    Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1  MRLTQIKLAGFKSFVEPTVIPTPSQLVGVVGPNGCGKSNIIDAVRWVLGESKASELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|307594964|ref|YP_003901281.1| hypothetical protein Vdis_0838 [Vulcanisaeta distributa DSM
          14429]
 gi|307550165|gb|ADN50230.1| conserved hypothetical protein [Vulcanisaeta distributa DSM
          14429]
          Length = 358

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 5  IKIKFLN---ISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +++  L    I  F+     L +  +  +T+ VG +G GKT+ +EA++ L   RG
Sbjct: 1  MRMTRLVRAVIKGFKGLGRGLTIDLN-GNTVIVGRSGSGKTSFMEALALLMQSRG 54


>gi|297675945|ref|XP_002815909.1| PREDICTED: DNA repair protein RAD50-like [Pongo abelii]
          Length = 1312

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|297526734|ref|YP_003668758.1| SMC domain protein [Staphylothermus hellenicus DSM 12710]
 gi|297255650|gb|ADI31859.1| SMC domain protein [Staphylothermus hellenicus DSM 12710]
          Length = 832

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 5  IKIKFLNISEFRNYASLRLVFD-AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          + I  L +   R+Y    +VF     T+  GD G GK+ IL +I++   G+  R      
Sbjct: 1  MIILGLRLKNIRSYTDKTIVFPRKGITVIYGDVGTGKSTILSSIAYALFGQP-RSRIPDP 59

Query: 64 VTRI 67
          + R 
Sbjct: 60 MERY 63


>gi|240115167|ref|ZP_04729229.1| hypothetical protein NgonPID1_02768 [Neisseria gonorrhoeae PID18]
 gi|260441015|ref|ZP_05794831.1| hypothetical protein NgonDG_08026 [Neisseria gonorrhoeae DGI2]
 gi|268600843|ref|ZP_06135010.1| DNA repair protein RecN [Neisseria gonorrhoeae PID18]
 gi|291044347|ref|ZP_06570056.1| DNA repair protein recN [Neisseria gonorrhoeae DGI2]
 gi|268584974|gb|EEZ49650.1| DNA repair protein RecN [Neisseria gonorrhoeae PID18]
 gi|291011241|gb|EFE03237.1| DNA repair protein recN [Neisseria gonorrhoeae DGI2]
          Length = 557

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 22/182 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-------SPGRGFRRA 59
           +  L++ +F    +L L F +  T+  G+ G GK+  L+AI  L       S  R    A
Sbjct: 2   LLTLSLRDFVIVENLNLDFQSGFTVLTGETGAGKSITLDAIGLLLGDKADYSQVRS--GA 59

Query: 60  SYADV-TRIGSPSFFSTFARVEGM----EGLADISIKLETRDDRSVRCLQINDVV-IRVV 113
             A +          +  A +       EG  ++SI+         R    N    +  +
Sbjct: 60  KEAQLSALFDISHLPALKAELREQGLLDEGGEELSIRRIIDAKGKSRSFINNQAATLAQL 119

Query: 114 DELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAI-----DPRHRRRMIDFERLMRG 168
             +   L           +    +   R  LD  V          +  +   D ++ ++ 
Sbjct: 120 KAVGGQLIDIHGQNDHHSLNQEAAQ--RELLDAFVGGRVQAETVRQLYQNWADAKKALQE 177

Query: 169 RN 170
             
Sbjct: 178 AQ 179


>gi|229368749|gb|ACQ63030.1| RAD50 homolog isoform 1 (predicted) [Dasypus novemcinctus]
          Length = 1312

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|212704349|ref|ZP_03312477.1| hypothetical protein DESPIG_02404 [Desulfovibrio piger ATCC 29098]
 gi|212672208|gb|EEB32691.1| hypothetical protein DESPIG_02404 [Desulfovibrio piger ATCC 29098]
          Length = 491

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 13/86 (15%)

Query: 283 TIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIG 342
           +I   STG+ + + +              G   ILLLDE  + LDED R     ++  + 
Sbjct: 406 SIRLLSTGQLRRLFLA---------RALMGEPDILLLDEPCSALDEDSRRQYLDLLDQLA 456

Query: 343 ----SQIFMTGTDKSVFDSLNETAKF 364
               S +F++  +      +N  A+ 
Sbjct: 457 ARGISLVFVSHFEGDAPSCINRRARM 482


>gi|200388593|ref|ZP_03215205.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605691|gb|EDZ04236.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 271

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 18/91 (19%)

Query: 288 STGEQKVVLVG--IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ- 344
           S G++K V +   + L  AR +          LLDE +A LD   R  +  I+  I +Q 
Sbjct: 138 SHGQKKRVAIAGALVL-QARYL----------LLDEPTAGLDPAGRTQMLAIIRRIVAQG 186

Query: 345 --IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             + ++  D  +   +++    +R    Q L
Sbjct: 187 NHVIISSHDIDLIYEISDAVYVLR--QGQIL 215


>gi|119582732|gb|EAW62328.1| RAD50 homolog (S. cerevisiae), isoform CRA_a [Homo sapiens]
          Length = 1315

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|114601589|ref|XP_517922.2| PREDICTED: RAD50 homolog isoform 2 [Pan troglodytes]
          Length = 1219

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|114601587|ref|XP_001163412.1| PREDICTED: DNA repair protein RAD50 isoform 1 [Pan troglodytes]
          Length = 1312

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|19924129|ref|NP_005723.2| DNA repair protein RAD50 [Homo sapiens]
 gi|60392986|sp|Q92878|RAD50_HUMAN RecName: Full=DNA repair protein RAD50; Short=hRAD50
 gi|5739041|gb|AAD50325.1|AF057299_1 RAD50-2 protein [Homo sapiens]
 gi|1518806|gb|AAB07119.1| Rad50 [Homo sapiens]
 gi|119582733|gb|EAW62329.1| RAD50 homolog (S. cerevisiae), isoform CRA_b [Homo sapiens]
 gi|223459632|gb|AAI36437.1| RAD50 homolog (S. cerevisiae) [Homo sapiens]
          Length = 1312

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|327353571|gb|EGE82428.1| nuclear condensin complex subunit Smc2 [Ajellomyces dermatitidis
           ATCC 18188]
          Length = 1176

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 17/125 (13%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIVEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E    IS+  +     + + L    
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSKSPIGFEEYTSISVTRQIVLGGTSKYLINGH 120

Query: 108 VVIRV 112
              + 
Sbjct: 121 RAQQQ 125


>gi|327399161|ref|YP_004340030.1| SMC domain-containing protein [Hippea maritima DSM 10411]
 gi|327181790|gb|AEA33971.1| SMC domain protein [Hippea maritima DSM 10411]
          Length = 510

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 11/117 (9%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT- 65
           ++ + I  F       +      T  VG++G GK+ IL+AI  +     F       V  
Sbjct: 2   LRRIEIENFLTIEKCTIEPSKGLTAIVGESGSGKSLILKAIDSV-----FSSKVDTGVVG 56

Query: 66  RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRI 122
             G  +    F  +       D  I LE  D  +   + I  +       L  H  I
Sbjct: 57  NFGDKTTIKLFFELN-----EDQKIGLEAFDIDADEIVLIRIIKKGKSRILLNHEPI 108


>gi|323705375|ref|ZP_08116950.1| SMC domain protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535277|gb|EGB25053.1| SMC domain protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 853

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 9  FLNISEFRNYASLRL-VFDA-QHTIFVGDNGVGKTNILEAISFLSPGR-----GFRRASY 61
           L +  F +Y+   +  F         G NG GK+++ +AI++   GR     G  R S 
Sbjct: 5  RLTLKNFMSYSENEVMDFTRFHIAAITGKNGNGKSSLWDAITWCIWGRARGLDGAGRGSD 64

Query: 62 ADVTRIGSPSFFSTF 76
           D+ RIG+      F
Sbjct: 65 -DLIRIGADEMEVEF 78


>gi|289771110|ref|ZP_06530488.1| ABC transporter [Streptomyces lividans TK24]
 gi|289701309|gb|EFD68738.1| ABC transporter [Streptomyces lividans TK24]
          Length = 264

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           K     H S G+++ V V   LA             IL+LDE S++LD   R  L  I+ 
Sbjct: 147 KDRPPHHLSFGQRRRVAVATVLAM---------EPEILVLDEPSSNLDPASRRELADILR 197

Query: 340 DIGSQIFMTGTDKSVFDSLNETAKFM 365
            +   + M   D      L   A  +
Sbjct: 198 SLDVTVLMVTHDLPYALELCPRALIL 223


>gi|221488726|gb|EEE26940.1| structural maintenance of chromosomes smc4, putative [Toxoplasma
           gondii GT1]
          Length = 1644

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 4   RIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
           R+ I+ + +  F++Y        F  + T  VG NG GK+N+++A+ F
Sbjct: 151 RLMIERVVLENFKSYGKKKTIGPFHKRFTAIVGPNGSGKSNVIDAMLF 198


>gi|210616999|ref|ZP_03291334.1| hypothetical protein CLONEX_03556 [Clostridium nexile DSM 1787]
 gi|210149522|gb|EEA80531.1| hypothetical protein CLONEX_03556 [Clostridium nexile DSM 1787]
          Length = 503

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          ++I+ L +  F  ++  ++V      +F G+N  GKT I
Sbjct: 1  MEIRELYLRNFGKFSGKKIVLKDGINLFYGENESGKTTI 39



 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 70/202 (34%), Gaps = 24/202 (11%)

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFP 222
           ++L+  +  L  E         +++ Q++EL    +  + + +   +  +      E   
Sbjct: 311 DKLLWQKEHLQGELKEKQIQYGNVQEQLSELDEAGDDYKKQDMKKRALELASECLTELSK 370

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAI 282
            +   L+  L+ K       +       L     +D   + +L             ++ I
Sbjct: 371 DVHKELSVKLNEKASAILSEITGGKYTMLL----IDEKLKMSLYT----------GERKI 416

Query: 283 TIAHGSTG--EQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTD 340
            I   S G  EQ  +   + +A + L+       P++L D+     D+ +     + + +
Sbjct: 417 GIEQVSRGTIEQ--IYFALRMAASELLHEE--EYPVIL-DDTFVFYDDQRLENTMKWLAE 471

Query: 341 IGSQIFMTGT---DKSVFDSLN 359
              Q+ +      ++ + + L 
Sbjct: 472 HKKQVLIFTCQKREQQILEKLG 493


>gi|254384254|ref|ZP_04999597.1| hypothetical protein SSAG_03811 [Streptomyces sp. Mg1]
 gi|194343142|gb|EDX24108.1| hypothetical protein SSAG_03811 [Streptomyces sp. Mg1]
          Length = 373

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 5   IKIKFLNISEFRNYAS-LRLVFDA----QHTIFVGDNGVGKTNILEAISFLSPGR--GFR 57
           +++  L ++ F  +A    + FDA       +  G  G GKT++L+A+ +   G   G R
Sbjct: 1   MRLHRLRVTAFGPFAEPQEIDFDALSGAGIFLLHGPTGAGKTSVLDAVCYALYGSVPGSR 60

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRC 102
           +A    +    S     T   ++   G   + I      DR  + 
Sbjct: 61  QAPGTSLRSDHSAPDTPTEVTLDLTAGGRRLEITRRPEQDRPKKR 105


>gi|161613374|ref|YP_001587339.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168242085|ref|ZP_02667017.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194449826|ref|YP_002046068.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|198243519|ref|YP_002216105.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207857455|ref|YP_002244106.1| cobalt transporter ATP-binding subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|161362738|gb|ABX66506.1| hypothetical protein SPAB_01085 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194408130|gb|ACF68349.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197938035|gb|ACH75368.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205338328|gb|EDZ25092.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|206709258|emb|CAR33598.1| putative cobalt transport ATP-binding protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 271

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 18/91 (19%)

Query: 288 STGEQKVVLVG--IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ- 344
           S G++K V +   + L  AR +          LLDE +A LD   R  +  I+  I +Q 
Sbjct: 138 SHGQKKRVAIAGALVL-QARYL----------LLDEPTAGLDPAGRTQMLAIIRRIVAQG 186

Query: 345 --IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             + ++  D  +   +++    +R    Q L
Sbjct: 187 NHVIISSHDIDLIYEISDAVYVLR--QGQIL 215


>gi|300087895|ref|YP_003758417.1| SMC domain-containing protein [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527628|gb|ADJ26096.1| SMC domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 863

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 9   FLNISEFRNYAS--LRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRG---FRRASYA 62
            L +  F  Y        FD        G NG GKT+I++A+++   G+     +     
Sbjct: 5   RLKLFNFLPYRGDIQPFSFDGIHLACISGANGAGKTSIIDAMTWALWGKSRAGSKSTGDD 64

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSV 100
           D+   G      TF    G   +  +  +         
Sbjct: 65  DLISQGEREMAVTFDFRTGDGRIYRVERRRSLPKKGKG 102


>gi|312195596|ref|YP_004015657.1| DNA repair protein RecN [Frankia sp. EuI1c]
 gi|311226932|gb|ADP79787.1| DNA repair protein RecN [Frankia sp. EuI1c]
          Length = 581

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 36/215 (16%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           M   I+++ L + +        L   A  T+  G+ G GKT I++ +  L+ GR     +
Sbjct: 1   MLEEIRLRGLGVID-----DAVLDLAAGLTVVTGETGAGKTMIVQGLGLLTGGR-----A 50

Query: 61  YADVTRIGSPSFFS-----------TFARVEGMEGLAD------ISIKLETRDDRSVRCL 103
              + R G    F            T ARV    G  D      I   L   D RS   +
Sbjct: 51  DYGLIRPGYDRAFVEGRLVISPDSPTAARVREAGGELDEGGVLVIGRTL-ISDGRSRVQV 109

Query: 104 QINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMER--RRFLDRMVFAIDPRHRRRMID 161
               V   ++ +L++ L          R+    +      RF    V     R+      
Sbjct: 110 GGRAVPASLLAQLSEDLVAVHGQSEAQRLLKTSTQRAALDRFAGEAVAKPLTRYGE---R 166

Query: 162 FERLMRGRNRLL---TEGYFDSSWCSSIEAQMAEL 193
           + RL   R +L          ++   S+ +++A++
Sbjct: 167 YTRLAAVRAKLADITERSRERAAEAESLRSRLADI 201


>gi|260654734|ref|ZP_05860222.1| DNA replication and repair protein RecF [Jonquetella anthropi
          E3_33 E1]
 gi|260630449|gb|EEX48643.1| DNA replication and repair protein RecF [Jonquetella anthropi
          E3_33 E1]
          Length = 87

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          ++ L+I++FR +      F    T+  G NGVGK+NIL
Sbjct: 5  LQKLHINKFRIFKDKTFYFGKYITVIAGQNGVGKSNIL 42


>gi|146283647|ref|YP_001173800.1| DNA repair protein RecN [Pseudomonas stutzeri A1501]
 gi|145571852|gb|ABP80958.1| DNA repair protein RecN [Pseudomonas stutzeri A1501]
          Length = 557

 Score = 42.2 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 59/207 (28%), Gaps = 26/207 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +     L L      ++  G+ G GK+ +L+A+      R     + + V R
Sbjct: 2   LVHLSVHNYAIVEHLDLELKRGMSVISGETGAGKSIMLDALGLTLGDR-----ADSSVVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
           IG+                  A +   +  ++    L        R    IN       D
Sbjct: 57  IGADKADILASFDLDDIPDARAWLAERDIDSEGPCILRRVITAEGRSRGYINGTPCPQGD 116

Query: 115 --ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
              L + L           +    +   RR LD    + D         +R     + + 
Sbjct: 117 LKALGELLIDIHSQHEHQSLLK--TDTHRRLLDEYSGSQDLARQVQLAAQRWRQTRQTLE 174

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELG 194
             +    E        S    ++  L 
Sbjct: 175 RLSNSSDEQRARHQLLSYQLEELENLA 201


>gi|329119549|ref|ZP_08248233.1| DNA repair protein RecN [Neisseria bacilliformis ATCC BAA-1200]
 gi|327464336|gb|EGF10637.1| DNA repair protein RecN [Neisseria bacilliformis ATCC BAA-1200]
          Length = 604

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 15/116 (12%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL-----------SPGRG 55
           +  L + +F     L L F    T+  G+ G GK+  L+AI  L           +  + 
Sbjct: 52  LLALTLDDFVIVDHLELDFQPGFTVLTGETGAGKSITLDAIGLLLGDKADYAQVRAGAKE 111

Query: 56  FRRASYADVTRIGS-PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVI 110
            R ++  D+  +    +  +    +E  EG  +++I+         R   IN    
Sbjct: 112 ARLSALFDLAALPEMQTELAAQGLIE--EGATELTIRRVIDAKGKSRSY-INGQAA 164


>gi|325697209|gb|EGD39095.1| lantibiotic protection ABC superfamily ATP binding cassette
          transporter [Streptococcus sanguinis SK160]
 gi|327472009|gb|EGF17448.1| lantibiotic protection ABC superfamily ATP binding cassette
          transporter [Streptococcus sanguinis SK408]
 gi|328944807|gb|EGG38968.1| lantibiotic protection ABC superfamily ATP binding cassette
          transporter [Streptococcus sanguinis SK1087]
          Length = 357

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 8/65 (12%)

Query: 5  IK-IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
          +K I  +++  F+ +            +  G N  GK+ +++++  L      R++  A 
Sbjct: 1  MKTIHKVSLKHFKCFKKKEFNL-KNLNVLTGINSSGKSTLIQSLLIL------RQSFDAR 53

Query: 64 VTRIG 68
          +   G
Sbjct: 54 MIESG 58


>gi|307721339|ref|YP_003892479.1| ABC transporter [Sulfurimonas autotrophica DSM 16294]
 gi|306979432|gb|ADN09467.1| ABC transporter related protein [Sulfurimonas autotrophica DSM
           16294]
          Length = 220

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           K I + + S GEQ+   +                  I+L DE +A+LDE       +I+ 
Sbjct: 132 KEIAVKNLSGGEQQRTAIA---------RANVNNPKIILADEPTANLDEKLSKEFIQILK 182

Query: 340 DIGS--QIFMTGTDKSVFDSLNETAKFMRISNHQALC 374
           ++ S  +  +  T   +F  L+   + + I N + +C
Sbjct: 183 ELKSLNKTIIVATHDPLFFDLDFVDRIVEIHNGKLVC 219


>gi|238695210|ref|YP_002922403.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          JS10]
 gi|220029346|gb|ACL78280.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          JS10]
          Length = 560

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 5  IKIKFLNISEFRNY-----ASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          +K   L    ++N        + +  D  Q T+  G NG GK+  LEA++F   G+ FR 
Sbjct: 1  MKTFKLKKVTYKNIMSVGQQPITIQLDKVQKTLVTGKNGAGKSTFLEAVTFALFGKPFRD 60

Query: 59 ASYADVTR 66
               +  
Sbjct: 61 VKKGQLIN 68


>gi|242213363|ref|XP_002472510.1| predicted protein [Postia placenta Mad-698-R]
 gi|220728401|gb|EED82296.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1254

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 7  IKFLNISEFRNYASLRL---VFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  L +   R++   ++    F    T+ VG NG GKT I+E + + + G
Sbjct: 4  IDKLAVRGIRSFDDKQISVIEFFTPVTVIVGHNGSGKTTIIECLKYATTG 53


>gi|152990520|ref|YP_001356242.1| DNA repair protein RecN [Nitratiruptor sp. SB155-2]
 gi|151422381|dbj|BAF69885.1| DNA repair protein RecN [Nitratiruptor sp. SB155-2]
          Length = 507

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 8/130 (6%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           I+ L I  +  +    L F     +F G +G GK+ I++A+  L           A +  
Sbjct: 2   IERLYIKNYLTFEEETLEFSQGLMVFTGPSGAGKSLIIKALLSLFG--------LAPLEA 53

Query: 67  IGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLV 126
             + +   T    E ++   D +I +       +R    +  + +   +      I++L 
Sbjct: 54  KVAEAVLDTELESEALDIDPDENIIIRGIKKEKIRFFLNDQTISKKSLQHIFQHYIAYLN 113

Query: 127 PSMDRIFSGL 136
           P     FS  
Sbjct: 114 PKDSNFFSSA 123


>gi|145589638|ref|YP_001156235.1| chromosome segregation protein SMC [Polynucleobacter necessarius
          subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048044|gb|ABP34671.1| chromosome segregation protein SMC [Polynucleobacter necessarius
          subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1173

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 5  IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
          +++K + +S F+++          Q    VG NG GK+NI++A+ ++   S     R  S
Sbjct: 1  MQLKSIKLSGFKSFVDPTHFEMPGQLIGVVGPNGCGKSNIIDAVRWVLGESRASELRGES 60

Query: 61 YADVTRIGS 69
            DV   GS
Sbjct: 61 MQDVIFNGS 69


>gi|116334087|ref|YP_795614.1| DNA repair ATPase [Lactobacillus brevis ATCC 367]
 gi|116099434|gb|ABJ64583.1| DNA repair ATPase [Lactobacillus brevis ATCC 367]
          Length = 874

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 67/181 (37%), Gaps = 15/181 (8%)

Query: 183 CSSIEAQMAEL---GVK--INIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
            +++  Q+A L   G +  +   R  ++  + +   +++          +      G   
Sbjct: 691 LATLAGQLAHLTTSGTQATLRQRRQNLVTEMQTTTEKWLVDRLASQWIETTLAAASGDRL 750

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLV 297
               A   E+  KL + R        T +   +         +  T++  S G  + + +
Sbjct: 751 PQIIAQASEFYGKLTENRYTKIELTSTTLQVQKQ------TGEWRTVSQLSRGTAEQLDL 804

Query: 298 GIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVF 355
            + LA A ++         L++D+   + DE +R A + ++ +I    Q+ +   D +V 
Sbjct: 805 AVKLAFAVVMQQQVAMP--LIIDDGFVNFDERRRQAAYALLAEISHKIQVILLTADTTVI 862

Query: 356 D 356
            
Sbjct: 863 Q 863



 Score = 39.1 bits (90), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGK---TNILEAISFLSPGRGF 56
          + +K L I  F ++       DA     VG N  GK   T  + AI F  P +  
Sbjct: 1  MYLKTLTIYGFGHFHDRTFTLDAGLNYLVGPNEAGKSTLTQFIVAILFGFPTKKH 55


>gi|157130497|ref|XP_001661899.1| DNA repair protein rad50 [Aedes aegypti]
 gi|108871897|gb|EAT36122.1| DNA repair protein rad50 [Aedes aegypti]
          Length = 284

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 7  IKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I  L I   R++        ++ F +  T+ VG NG GKT I+E + +   G
Sbjct: 4  ISKLEIRGIRSFGVESGDVQKIKFQSPLTLIVGQNGCGKTTIIECLKYGLTG 55


>gi|332221676|ref|XP_003259989.1| PREDICTED: DNA repair protein RAD50 isoform 1 [Nomascus
          leucogenys]
          Length = 1313

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|331086907|ref|ZP_08335984.1| hypothetical protein HMPREF0987_02287 [Lachnospiraceae bacterium
          9_1_43BFAA]
 gi|330410073|gb|EGG89508.1| hypothetical protein HMPREF0987_02287 [Lachnospiraceae bacterium
          9_1_43BFAA]
          Length = 464

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHT-----------IFVGDNGVGKTNILEAISFL 50
          +++  L ++  +N     +                     G NG GKT I++A+ FL
Sbjct: 6  VRLSSLQLTNIKNVKKGTIYMPNTVNKILSADKAEILGIYGQNGSGKTAIVDALYFL 62


>gi|296446206|ref|ZP_06888153.1| ATPase, RecF-like protein [Methylosinus trichosporium OB3b]
 gi|296256243|gb|EFH03323.1| ATPase, RecF-like protein [Methylosinus trichosporium OB3b]
          Length = 395

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L I+ +R+   L +  + +  I  G NG GK+++  A+  L+
Sbjct: 11 LSVLAIAGYRSLHDLVVPLE-RLNIVTGPNGSGKSSLYRALRLLA 54


>gi|261191993|ref|XP_002622404.1| nuclear condensin complex subunit Smc2 [Ajellomyces dermatitidis
           SLH14081]
 gi|239589720|gb|EEQ72363.1| nuclear condensin complex subunit Smc2 [Ajellomyces dermatitidis
           SLH14081]
          Length = 1179

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 5   IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRA 59
           ++I  + I  F++YA   +   +D       G NG GK+NIL++I F   ++     R  
Sbjct: 1   MRIVEVIIDGFKSYAVRTVISGWDESFNSITGLNGSGKSNILDSICFVLGITNMSTVRAQ 60

Query: 60  SYADVT-RIGSPSFFSTFARVE-----------GMEGLADISIKLETRDDRSVRCLQIND 107
           +  D+  + G          +            G E    IS+  +     + + L IN 
Sbjct: 61  NLQDLIYKRGQAGVTKASVTIVFDNRDKSKSPIGFEEYTSISVTRQIVLGGTSKYL-ING 119

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIFSGL 136
              +     N    +   + + + +    
Sbjct: 120 HRAQQQTVQNLFQSVQLNINNPNFLIMQG 148


>gi|161622553|ref|YP_001595183.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          JS98]
 gi|52139874|gb|AAU29245.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          JS98]
          Length = 560

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 5  IKIKFLNISEFRNY-----ASLRLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          +K   L    ++N        + +  D  Q T+  G NG GK+  LEA++F   G+ FR 
Sbjct: 1  MKTFKLKKVTYKNIMSVGQQPITIQLDKVQKTLVTGKNGAGKSTFLEAVTFALFGKPFRD 60

Query: 59 ASYADVTR 66
               +  
Sbjct: 61 VKKGQLIN 68


>gi|326333249|ref|ZP_08199496.1| cobalt ABC transporter, ATP-binding protein [Nocardioidaceae
           bacterium Broad-1]
 gi|325948893|gb|EGD40986.1| cobalt ABC transporter, ATP-binding protein [Nocardioidaceae
           bacterium Broad-1]
          Length = 250

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 65/198 (32%), Gaps = 32/198 (16%)

Query: 191 AELGVKINIARVEMINALSSL-IMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAK 249
           A  GV +++ R E +  L      +     +   I L+  G +         A  +E  +
Sbjct: 21  ALFGVDLHVHRGERVALLGPNGAGKTTLVLHLNGIHLAGAGSVAVSGLPVTKANIKEIRR 80

Query: 250 K-----------LFDGRKM-DSMSRRTLIGPHRSDLIVDYCDK----------AITIAHG 287
           +           LF G    D       +G    DL     +                H 
Sbjct: 81  RVGIVFQDPDDQLFMGTVREDVAFGPANLGLRGEDLDAKVAEALAKVGMEDFADRPPHHL 140

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G+++ V V   LA             IL+LDE S++LD   R  L  I+ D+   + M
Sbjct: 141 SFGQRRRVAVATVLAM---------DPEILVLDEPSSNLDPASRRELADILRDLDVTVLM 191

Query: 348 TGTDKSVFDSLNETAKFM 365
              D      L E +  +
Sbjct: 192 VTHDLPYALELCERSVIL 209


>gi|226328157|ref|ZP_03803675.1| hypothetical protein PROPEN_02048 [Proteus penneri ATCC 35198]
 gi|225203861|gb|EEG86215.1| hypothetical protein PROPEN_02048 [Proteus penneri ATCC 35198]
          Length = 158

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L IS F     L + F    T   G+ G GK+  ++A+      RG      A++ R
Sbjct: 2  LTQLTISHFAIVRELEIDFSGGMTTITGETGAGKSIAIDALGLCLGNRG-----DANMVR 56

Query: 67 IGS 69
           G+
Sbjct: 57 PGA 59


>gi|213404310|ref|XP_002172927.1| DNA repair protein rad50 [Schizosaccharomyces japonicus yFS275]
 gi|212000974|gb|EEB06634.1| DNA repair protein rad50 [Schizosaccharomyces japonicus yFS275]
          Length = 1296

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 3  NRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +++ I  + I  F N +   + F A  T+ VG NG GKT I+E + + + G
Sbjct: 5  DKMSI--MGIRSFDNTSRETIQFYAPLTLIVGHNGAGKTTIIECLKYATTG 53


>gi|237837441|ref|XP_002368018.1| chromosome condensation protein, putative [Toxoplasma gondii ME49]
 gi|211965682|gb|EEB00878.1| chromosome condensation protein, putative [Toxoplasma gondii ME49]
 gi|221509219|gb|EEE34788.1| SMC protein, putative [Toxoplasma gondii VEG]
          Length = 1640

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 4   RIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
           R+ I+ + +  F++Y        F  + T  VG NG GK+N+++A+ F
Sbjct: 151 RLMIERVVLENFKSYGKKKTIGPFHKRFTAIVGPNGSGKSNVIDAMLF 198


>gi|168229332|ref|ZP_02654390.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194471080|ref|ZP_03077064.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457444|gb|EDX46283.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335628|gb|EDZ22392.1| cobalt import ATP-binding protein CbiO [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 271

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 18/91 (19%)

Query: 288 STGEQKVVLVG--IFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ- 344
           S G++K V +   + L  AR +          LLDE +A LD   R  +  I+  I +Q 
Sbjct: 138 SHGQKKRVAIAGALVL-QARYL----------LLDEPTAGLDPAGRTQMLAIIRRIVAQG 186

Query: 345 --IFMTGTDKSVFDSLNETAKFMRISNHQAL 373
             + ++  D  +   +++    +R    Q L
Sbjct: 187 NHVIISSHDIDLIYEISDAVYVLR--QGQIL 215


>gi|158288372|ref|XP_310233.4| AGAP009463-PA [Anopheles gambiae str. PEST]
 gi|157019219|gb|EAA45250.4| AGAP009463-PA [Anopheles gambiae str. PEST]
          Length = 657

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 26/180 (14%)

Query: 194 GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFD 253
           G      R+  +N+   +     Q +       +L   ++     +   L  E ++   +
Sbjct: 133 GAVYVNGRIRNLNSFRRMTCYITQDDRL----QTLLTVVENMRIAADLKLGPEVSRHEKE 188

Query: 254 GRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGF 313
               D +   T++G +     +            S G++K + + +              
Sbjct: 189 SIVEDIL---TVLGLYNHQFTIT--------KLLSGGQRKRLSIAL---------ELINN 228

Query: 314 APILLLDEISAHLDEDKRNALFRIVTDIGSQ--IFMTGTDKSVFDSLNETAKFMRISNHQ 371
             I+ LDE +  LD    N +  ++  +  Q    +    +       E  +   +SN +
Sbjct: 229 PTIMFLDEPTTGLDSSSCNQVVDLLKQLAKQGRTIICTIHQPSAKLFQEFDQVYVLSNGE 288


>gi|126650843|ref|ZP_01723059.1| hypothetical protein BB14905_05013 [Bacillus sp. B14905]
 gi|126592508|gb|EAZ86526.1| hypothetical protein BB14905_05013 [Bacillus sp. B14905]
          Length = 225

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAI 47
            L F    T FVG+NG GK+ +LEAI
Sbjct: 13 QELEFPTNVTFFVGENGSGKSTLLEAI 39


>gi|77919920|ref|YP_357735.1| DNA repair protein RecN [Pelobacter carbinolicus DSM 2380]
 gi|77546003|gb|ABA89565.1| DNA replication and repair protein RecN [Pelobacter carbinolicus
           DSM 2380]
          Length = 560

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 17/117 (14%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L+I  F     L + F    ++  G+ G GK+ I++A++ +  GR     +  ++ R
Sbjct: 2   LTDLHIRHFAIIDRLHVSFCDGFSVLTGETGAGKSIIIDAVALILGGR-----AKPELVR 56

Query: 67  IGSPSFFSTFAR------------VEGMEGLADISIKLETRDDRSVRCLQINDVVIR 111
            G                       E   G  D  +     +      + IN  + +
Sbjct: 57  TGENEAVVEAVFDLSGTPLLRRELAEAGFGDEDELLVKRVVNPTGRNKIFINGSLAK 113


>gi|113461927|ref|YP_719996.1| hypothetical protein HS_1791 [Haemophilus somnus 129PT]
 gi|112823970|gb|ABI26059.1| conserved hypothetical protein [Haemophilus somnus 129PT]
          Length = 369

 Score = 41.8 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQ-HTIFVGDNGVGKTNILEAISFL 50
          +K +N    +    L L        + +G NG+GKT  LEA+  L
Sbjct: 4  LKNINFKGVKGINELELTLSDNPINVLIGTNGIGKTKALEALYTL 48


>gi|330980998|gb|EGH79101.1| putative ATP-dependent endonuclease of the OLD family
          [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 514

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          I  F+ + SL L F+A   + +G+N  GK++I
Sbjct: 3  IQNFKKFKSLTLDFEAGKNVLIGNNEAGKSSI 34


>gi|303328559|ref|ZP_07358994.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
 gi|302861325|gb|EFL84264.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
          Length = 384

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTI--FVGDNGVGKTNILEAISFLSPGRGFRRA 59
          +I  L+I +F++     L F     I   +G+NG GK+ +L+ + F+  G  FR  
Sbjct: 4  RITALHIDKFKSLNDFSLPFPKDGNILFLIGNNGSGKSTVLQCLDFI--GAIFRGN 57


>gi|300812998|ref|ZP_07093384.1| conserved domain protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496032|gb|EFK31168.1| conserved domain protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 411

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 53/197 (26%), Gaps = 29/197 (14%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRR-- 58
           MTN  K+       + NY +     + Q  +F G+NG GKT  + ++         R   
Sbjct: 1   MTNY-KLNRFGFYNYFNYRNQTFDANTQSIVFNGENGSGKTATMLSLFPTIFLGSMRVVD 59

Query: 59  --ASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDEL 116
              S     + G   F     + + +     ++         +     +    ++     
Sbjct: 60  NKRSLDYYIKAGEAGFAWAEFKADDLLQTLLLAYSKSADGSNTNHYYYVLKQGVK----- 114

Query: 117 NKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEG 176
              L  S   P             RR+                 D++  +      L  G
Sbjct: 115 GDDLPYSTSWPEFRGAVK--PYVERRY-------------ETQADYQNAINQ----LFFG 155

Query: 177 YFDSSWCSSIEAQMAEL 193
           +   S        +A  
Sbjct: 156 FASQSEMQEYFEHLAAF 172


>gi|289667384|ref|ZP_06488459.1| hypothetical protein XcampmN_02412 [Xanthomonas campestris pv.
          musacearum NCPPB4381]
          Length = 231

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAI 47
          +KIK + ++ FR Y+   +V     ++ VG N +GK+ ILEA+
Sbjct: 1  MKIKAVTVNRFRGYSEPVIVGLDDLSVLVGRNDIGKSTILEAL 43


>gi|240144840|ref|ZP_04743441.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
 gi|257203100|gb|EEV01385.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
          Length = 561

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          ++IK   I +F    +  + F+    +  G+N  GKT +
Sbjct: 1  MQIKEAIIGQFGKLQNRNISFEPGINVIYGENEAGKTTL 39


>gi|197215656|gb|ACH53047.1| RAD50 homolog isoform 1 (predicted) [Otolemur garnettii]
          Length = 1311

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|167045855|gb|ABZ10522.1| RAD50 homolog isoform 1 (predicted) [Callithrix jacchus]
          Length = 1312

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|241664908|ref|YP_002983268.1| SMC domain-containing protein [Ralstonia pickettii 12D]
 gi|240866935|gb|ACS64596.1| SMC domain protein [Ralstonia pickettii 12D]
          Length = 249

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISF 49
           L    + T  VG+NG GK+ ++EAI+ 
Sbjct: 35 TLELHPKVTFLVGENGSGKSTLMEAIAV 62


>gi|73662544|ref|YP_301325.1| DNA repair protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
 gi|72495059|dbj|BAE18380.1| DNA repair protein [Staphylococcus saprophyticus subsp.
          saprophyticus ATCC 15305]
          Length = 560

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 6/84 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          ++ L+I +F     L + F    T+  G+ G GK+ I++AI  L    G R +S  +  R
Sbjct: 2  LQTLSIKQFAIIDELEVHFGDGLTVLSGETGAGKSIIIDAIGQLI---GMRASS--NYVR 56

Query: 67 IGSPSFFSTFARVEGMEGLADISI 90
           G           +  E    ISI
Sbjct: 57 HGEKKAI-IEGIFDIDESKEAISI 79


>gi|163941763|ref|YP_001646647.1| SMC domain-containing protein [Bacillus weihenstephanensis KBAB4]
 gi|163863960|gb|ABY45019.1| SMC domain protein [Bacillus weihenstephanensis KBAB4]
          Length = 250

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L+F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 34 QSLLFHPNVTFIIGENGTGKSTLLEAIAVALGFNAEGGTKNFR 76


>gi|297170563|gb|ADI21590.1| ATPase involved in DNA repair [uncultured Oceanospirillales
           bacterium HF0130_06B06]
          Length = 557

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 102/338 (30%), Gaps = 29/338 (8%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----FRRASYA 62
           +  L+I  +     L + F++  +   G+ G GK+ IL A+      R      R     
Sbjct: 2   LLQLSIQNYATVDRLEIEFNSGMSCITGETGAGKSIILGALGLTLGDRADKTIVRDGKDK 61

Query: 63  DVTRIGSPSFFSTFARV----EGMEGLADISIKLETRDDRSVR-CLQINDVVI--RVVDE 115
                   +     AR+    + +      +  L    ++  R    IN   +  + + +
Sbjct: 62  ADICAEFDTVDIDVARIWLEGKDLSCEQTSTCILRRVVNKDGRSKAYINGTAVTMKNLKD 121

Query: 116 LNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE 175
           L + L           +        ++ LD     +D   R ++    R      + +TE
Sbjct: 122 LGEMLLDIHSQHEHQSLLQKS--THQKLLDDFC--LDRNLRGKLSSTWRQWHQNFKEMTE 177

Query: 176 GYFDSSWCSSIEAQMAEL---GVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFL 232
               S   S+ E Q+       ++           L S   E    E             
Sbjct: 178 LKNLSEENSA-EIQLLTYQLSELEELEIEENEFARLESEFKELSDAEEIILATSQALSAC 236

Query: 233 DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ 292
           + +  Q   +L       L + +         L+    +++ ++     +   H    E+
Sbjct: 237 ESESSQGVLSLISTATHTLRNIKNKPHQLEEILLTLASAEIQLEEAVSDLRSFH----EK 292

Query: 293 ------KVVLVGIFLAHARLISNTTGFAPILLLDEISA 324
                 ++  + + L     ++      P  LLD I +
Sbjct: 293 FDANPDRLAEINLRLGQLHGMARKHNVTPQNLLDVIDS 330


>gi|317473713|ref|ZP_07933000.1| phosphoesterase [Anaerostipes sp. 3_2_56FAA]
 gi|316898834|gb|EFV20861.1| phosphoesterase [Anaerostipes sp. 3_2_56FAA]
          Length = 793

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 59/220 (26%), Gaps = 44/220 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYADV 64
           I+ + I  F  +    L F     I  G N  GKT I E I  +  G  +  R  +    
Sbjct: 363 IRNIYIDGFGKFCGKELSFVPGLNIVYGPNESGKTTIKEFIVHMLFGLEKS-RGIAAR-- 419

Query: 65  TRIGSPSFFSTFARVEGMEGLADISIK-------LETRDDRSVRCLQINDVVIRVVDELN 117
                   ++ +  V G      + I        LE R     + L + D       +L+
Sbjct: 420 -----SDAYTIYTPVYGGNYGGVMEITADGHAWLLERRFRAGEKSLHLYDKESGEEGDLS 474

Query: 118 KHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE----------RLMR 167
           K   +S              +     L   +      +   +              + ++
Sbjct: 475 KLYTLSLGAYKDSFCIQEGDIPPSGNLSMELT----NYTSNLTGSNTADIKIDLALKALK 530

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINA 207
            +  LL     + S               +   R   + A
Sbjct: 531 EKKSLLRRKSREESIL-------------LTEKRERYLKA 557


>gi|302391435|ref|YP_003827255.1| SMC domain protein [Acetohalobium arabaticum DSM 5501]
 gi|302203512|gb|ADL12190.1| SMC domain protein [Acetohalobium arabaticum DSM 5501]
          Length = 684

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 5  IKIKFLNISEFRNY-ASLRLVF-------DAQHTIFVGDNGVGKTNILEAISFLSPGRGF 56
          +KIK + +  F+ Y     + F           T+  G+NG GKT++  A+ F   G  F
Sbjct: 1  MKIKDIELCNFKQYYGKQNIEFAGYDTDSSENVTVVYGENGRGKTSLYRALMFALYGDKF 60


>gi|262403009|ref|ZP_06079569.1| ABC transporter ATP-binding protein [Vibrio sp. RC586]
 gi|262350508|gb|EEY99641.1| ABC transporter ATP-binding protein [Vibrio sp. RC586]
          Length = 518

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 66/195 (33%), Gaps = 19/195 (9%)

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
            G   S+    ++A++     ++   R   I  L        Q     H++L+     + 
Sbjct: 38  NGVGKSTLFKLLQAELLPDRGQMEWQRHVQIGYLDQHAQMNEQLTIREHLQLTFKALYEL 97

Query: 235 KFDQ-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI--------- 284
           + +  S  A  E+        R  D  ++      +  D  +++  + + I         
Sbjct: 98  EAEMMSIYADPEQCVNSHALQRAADIQTKLESHAFYTLDTQIEHVAQGLGIVQLGLHTQL 157

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
            H S G++  V++   L              +LLLDE + +LD    + L   +      
Sbjct: 158 KHLSGGQRHKVILAALLLQ---------SPDVLLLDEPTNYLDAVHIDWLADYLNAFQGA 208

Query: 345 IFMTGTDKSVFDSLN 359
             +   D++  + + 
Sbjct: 209 FMVISHDRAFLNRIA 223


>gi|256397552|ref|YP_003119116.1| ABC transporter [Catenulispora acidiphila DSM 44928]
 gi|256363778|gb|ACU77275.1| ABC transporter related [Catenulispora acidiphila DSM 44928]
          Length = 608

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 15/123 (12%)

Query: 251 LFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNT 310
           L D R  D ++   L G   +D           I   S GE++ V +             
Sbjct: 105 LADARVRDVITG--LFG--GTDFPAFPDGMDTRIGPLSGGERRRVALA---------KAL 151

Query: 311 TGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFMRISNH 370
                +LLLDE + HLD +    L R +      +     D+   D++  T +   + N 
Sbjct: 152 INEHDLLLLDEPTNHLDVEGIAWLARHLATAKPALLTVTHDRWFLDAV--TTRTWEVVNG 209

Query: 371 QAL 373
           Q L
Sbjct: 210 QVL 212


>gi|227487548|ref|ZP_03917864.1| prophage Lp2 protein 4 [Corynebacterium glucuronolyticum ATCC
          51867]
 gi|227092530|gb|EEI27842.1| prophage Lp2 protein 4 [Corynebacterium glucuronolyticum ATCC
          51867]
          Length = 592

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 5  IKIKFLNISEFRNYA---SLRLVFDAQHTIFVGDNGVGKTNIL 44
          + IK + I +FR +      ++      T+  G NGVGK+ IL
Sbjct: 1  MYIKEILIEDFRAFKGGNPTKIPLSKNITVLTGHNGVGKSTIL 43


>gi|254227048|ref|ZP_04920606.1| RecF/RecN/SMC N terminal domain, putative [Vibrio cholerae V51]
 gi|125620423|gb|EAZ48799.1| RecF/RecN/SMC N terminal domain, putative [Vibrio cholerae V51]
          Length = 367

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 6  KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNIL 44
          KI  L I  F++  SL  L  +    + +G NGVGK+N +
Sbjct: 3  KIDRLTIQGFKSIRSLDKLQLN-NLNVLIGANGVGKSNFV 41


>gi|91228539|ref|ZP_01262460.1| hypothetical protein V12G01_09512 [Vibrio alginolyticus 12G01]
 gi|91187915|gb|EAS74226.1| hypothetical protein V12G01_09512 [Vibrio alginolyticus 12G01]
          Length = 367

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 6  KIKFLNISEFRNYASLR-LVFDAQHTIFVGDNGVGKTNIL 44
          KI  L I  F++  SL  L  +    + +G NGVGK+N +
Sbjct: 3  KIDRLTIQGFKSIRSLDKLQLN-NLNVLIGANGVGKSNFV 41


>gi|327265278|ref|XP_003217435.1| PREDICTED: DNA repair protein RAD50-like [Anolis carolinensis]
          Length = 1312

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I  ++I   R++         + F    TI VG NG GKT I+E + ++  G
Sbjct: 3  RIDKMSILGVRSFGIEDKDKQVISFFNPLTILVGPNGAGKTTIIECLKYVCTG 55


>gi|324500751|gb|ADY40344.1| Structural maintenance of chromosomes protein 4 [Ascaris suum]
          Length = 1544

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 4   RIKIKFLNISEFRNY--ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR 54
           R+ I  + +  F++Y    +   F    +  +G NG GK+N+++++ F+   R
Sbjct: 76  RLVIHSIEVENFKSYYGKHVLGPFHHNLSAIIGPNGSGKSNVIDSLLFVFGYR 128


>gi|320165811|gb|EFW42710.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
          Length = 1820

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 280  KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP-ILLLDEISAHLDEDKRNALFRIV 338
            K++  +  S+G+++   + + LA A L+S        ++  DEI   LD+  +  +  ++
Sbjct: 1694 KSLAQSALSSGQRQRFELALRLAKADLLSERHRVRFNVMFFDEIFNFLDDVGQKHILELL 1753

Query: 339  TDI 341
              +
Sbjct: 1754 PRL 1756


>gi|225550432|ref|ZP_03771381.1| p115 protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
 gi|225379586|gb|EEH01948.1| p115 protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
          Length = 816

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 83/267 (31%), Gaps = 43/267 (16%)

Query: 7   IKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS---PGRGFRRASYA 62
           +K +    F+++   +   F    T  VG NG GK+NI++A+ ++      +  R     
Sbjct: 4   LKKIEAQGFKSFGEPIVAEFKHPMTGIVGANGTGKSNIVDALKWVIGDQSLKSMRAHK-N 62

Query: 63  DVTRIGSPSFFSTFA--------RVEGMEGLADISIKLET--RDDRSVRCLQINDVVIRV 112
           ++   G                  V  +       IK+        +     IND ++R 
Sbjct: 63  ELLFSGGRYAPKAHIARVNLYFNNVNNVLYTEHKEIKISRVLNTKTNENTYYINDEIVR- 121

Query: 113 VDELNKHLRISWLVPSMDRIFSGL---------SMERRRFLDRMVFAIDPRHRRRMIDFE 163
           + ++      S L      I S            +ERR+  +             +  + 
Sbjct: 122 LKDITDMFLDSGLSKGSLGIISQGAVSWFAEAKPIERRKMFEE---------ASGIGRYS 172

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQ-KENFP 222
           +  +     L     +      +   +  L  ++       +   +    EY Q K+   
Sbjct: 173 KRKQEALSSLERANEN---LDRLNDIVVNLKKELTK-----LEKQAQRFNEYKQIKDELT 224

Query: 223 HIKLSLTGFLDGKFDQSFCALKEEYAK 249
            ++L +       + ++   +  E  +
Sbjct: 225 KLELVILVRDIVHWQKNLEQITNELKE 251


>gi|153815677|ref|ZP_01968345.1| hypothetical protein RUMTOR_01913 [Ruminococcus torques ATCC
          27756]
 gi|145846918|gb|EDK23836.1| hypothetical protein RUMTOR_01913 [Ruminococcus torques ATCC
          27756]
          Length = 238

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +L F+   T FVG+NG GK+ +LEAI+ 
Sbjct: 33 KLDFNKSITFFVGENGSGKSTLLEAIAI 60


>gi|118594796|ref|ZP_01552143.1| Chromosome segregation protein SMC [Methylophilales bacterium
           HTCC2181]
 gi|118440574|gb|EAV47201.1| Chromosome segregation protein SMC [Methylophilales bacterium
           HTCC2181]
          Length = 1164

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 16/126 (12%)

Query: 5   IKIKFLNISEFRNY-ASLRLVFDAQHTIFVGDNGVGKTNILEAISFL---SPGRGFRRAS 60
           +K++ + ++ F+ +     +  D +    VG NG GK+NI+E++ ++   S  +  R  S
Sbjct: 1   MKLRQIKLAGFKTFVDPTTIKLDGELAGIVGPNGCGKSNIMESVKWVLGSSSAKDMRGES 60

Query: 61  YADVTRIGSPSFFSTF-ARVEGMEGLADISIKLE-----------TRDDRSVRCLQINDV 108
              V   G+ +  +   A VE +   A+ +   E             +       QIN+ 
Sbjct: 61  MDSVIFNGTDTRQAIGRASVELIFDNANGAAPAEWASYAEISVKRIIEKEKGSTYQINNT 120

Query: 109 VIRVVD 114
            +R  D
Sbjct: 121 TVRRKD 126



 Score = 39.9 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 198  NIARVEMINALSSLIMEYVQKENFP-HIKLSLTGFLDGKFDQSFCALKEEYAKKLFDG-R 255
               +VE + A S  + + +QK +     KL LT        Q       E+ K LF+G  
Sbjct: 981  IQKQVEDLQAASKTLQDAIQKIDAETREKLKLTY-------QEVNKNFNEFFKTLFNGGH 1033

Query: 256  KMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAP 315
                +  + ++      +      K  TI   S GE+ +  + +  A  +L       +P
Sbjct: 1034 AQLELLGQEILDTGLQVVAQPPGKKNTTIHLLSGGEKAMTAIALVFALFKL-----NPSP 1088

Query: 316  ILLLDEISAHLDEDKRNALFRIVTDI--GSQIFM 347
              L+DE+ A LD+        +V  +   +Q   
Sbjct: 1089 FCLMDEVDAPLDDSNTQRFCEVVKSMSKNTQFLF 1122


>gi|107100248|ref|ZP_01364166.1| hypothetical protein PaerPA_01001271 [Pseudomonas aeruginosa
          PACS2]
          Length = 387

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L +S +R    L +    +  +  G NG GK+N+  A+  L+
Sbjct: 2  LTTLAVSNYRTLRDLVMPL-RRLNLITGANGAGKSNVYRALRLLA 45


>gi|3851586|gb|AAC72361.1| chromosome-associated protein-C [Homo sapiens]
          Length = 1202

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 13 SEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGF--RRASYADVTRIG 68
            F++YA  ++   F  + +  +G NG GK+N+++++ F+   R    R    + +    
Sbjct: 4  QNFKSYAGEKILGPFHKRFSCIIGPNGSGKSNVIDSMLFVFGYRAQKIRSKKLSVLIHNS 63

Query: 69 SPSFFSTFARVEGMEGLA 86
                    VE      
Sbjct: 64 DEHKDIQSCTVEVHFQKI 81


>gi|72383256|ref|YP_292611.1| condensin subunit Smc [Prochlorococcus marinus str. NATL2A]
 gi|72003106|gb|AAZ58908.1| condensin subunit Smc [Prochlorococcus marinus str. NATL2A]
          Length = 1183

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISF---LSPGRGFRRASYADVTRIG 68
          + +  +   T+  G NG GK+NIL+ + F   L+  RG R     D+   G
Sbjct: 1  MSIPLEDGFTVVTGPNGSGKSNILDGVLFCLGLANSRGMRADRLPDLVNSG 51


>gi|312384701|gb|EFR29366.1| hypothetical protein AND_01746 [Anopheles darlingi]
          Length = 1293

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 288  STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI--GSQI 345
            S G++ +V + +  A           AP  L DEI   LD   R+A+  ++ ++   +Q 
Sbjct: 1192 SGGQKSLVALALIFA-----IQKCDPAPFYLFDEIDQALDAQHRSAVADMIHELSDKAQ- 1245

Query: 346  FMTGTDKSVFDSLNETAKFMRI 367
            F+T T     + + +  KF  +
Sbjct: 1246 FITTT--FRLELMEKAHKFYGV 1265


>gi|238855148|ref|ZP_04645470.1| DNA repair ATPase [Lactobacillus jensenii 269-3]
 gi|260665525|ref|ZP_05866371.1| DNA repair ATPase [Lactobacillus jensenii SJ-7A-US]
 gi|282932561|ref|ZP_06337983.1| DNA repair ATPase [Lactobacillus jensenii 208-1]
 gi|238832229|gb|EEQ24544.1| DNA repair ATPase [Lactobacillus jensenii 269-3]
 gi|260560646|gb|EEX26624.1| DNA repair ATPase [Lactobacillus jensenii SJ-7A-US]
 gi|281303309|gb|EFA95489.1| DNA repair ATPase [Lactobacillus jensenii 208-1]
          Length = 804

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 11/162 (6%)

Query: 207 ALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLI 266
            L++   +Y+       I         G+         +EY   L +G        +T+ 
Sbjct: 651 QLNTATSKYLAYVLASQIITRALDIASGERLPKMLVASQEYFTLLTNGNYQAINFGKTIK 710

Query: 267 GPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHL 326
              R         K I I + S   ++ +   + L+ A+ I +       +L+D+   + 
Sbjct: 711 VTDR-------NSKKIEIKYLSRATKEQLYFALKLSFAKQIQDEINLP--ILIDDSFVNF 761

Query: 327 DEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNETAKFMR 366
           D  +   + +++  +    QI +    K++ D+L +      
Sbjct: 762 DHGRTENIMKLLEQLSQENQIIIFTARKALADALTKHVLTFE 803


>gi|270008862|gb|EFA05310.1| hypothetical protein TcasGA2_TC015468 [Tribolium castaneum]
          Length = 183

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQI-F 346
           S G++ +V +G+  A           AP  L DEI   LD   R A+  ++ ++ S+  F
Sbjct: 82  SGGQKSLVALGLIFA-----IQKCDPAPFYLFDEIDQALDAQHRKAVANMIHELSSEAQF 136

Query: 347 MTGTDKSVFDSLNETAKFMRIS 368
           +T T     + L    KF  + 
Sbjct: 137 ITTT--FRPELLEHAHKFYGVK 156


>gi|157325070|ref|YP_001468495.1| gp115 [Listeria phage A511]
 gi|66733078|gb|AAY52896.1| gp115 [Listeria phage A511]
          Length = 627

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 12/108 (11%)

Query: 8   KFLNISEFRNYASLRLVFDA-QHTIFVGDN---------GVGKTNILEAISFLSPGRGFR 57
           K + I  F +   + L  D     +  G N         G GKT++++AI++   G+   
Sbjct: 5   KKVKIKNFLSIKDMELNLDKQGLVLIEGKNKTNEAFKSNGAGKTSMIDAITYAIFGKTVG 64

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQI 105
                 V         +     E         I+   +D +    +++
Sbjct: 65  GLKSDSVVNNKEKKNTAVILDFE--VDKNKYRIERYRKDKKEGNIVKL 110


>gi|110668020|ref|YP_657831.1| ATPase invovled in DNA repair [Haloquadratum walsbyi DSM 16790]
 gi|109625767|emb|CAJ52202.1| predicted ATPase invovled in DNA repair [Haloquadratum walsbyi
          DSM 16790]
          Length = 667

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 5  IKIKFLNISEFRN-YASLRLVFD----AQHTIFVGDNGVGKTNIL 44
          +++K L +  FR  Y +  + F        T+  GDNG GKT +L
Sbjct: 1  MELKRLEVENFRQFYGTQEVSFSLEESNNVTVVHGDNGAGKTTLL 45


>gi|15595984|ref|NP_249478.1| hypothetical protein PA0787 [Pseudomonas aeruginosa PAO1]
 gi|116048703|ref|YP_792497.1| hypothetical protein PA14_54090 [Pseudomonas aeruginosa
          UCBPP-PA14]
 gi|218893270|ref|YP_002442139.1| putative ATPase [Pseudomonas aeruginosa LESB58]
 gi|254245041|ref|ZP_04938363.1| hypothetical protein PA2G_05925 [Pseudomonas aeruginosa 2192]
 gi|9946677|gb|AAG04176.1|AE004513_8 hypothetical protein PA0787 [Pseudomonas aeruginosa PAO1]
 gi|115583924|gb|ABJ09939.1| possible ATPase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126198419|gb|EAZ62482.1| hypothetical protein PA2G_05925 [Pseudomonas aeruginosa 2192]
 gi|218773498|emb|CAW29310.1| possible ATPase [Pseudomonas aeruginosa LESB58]
          Length = 387

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L +S +R    L +    +  +  G NG GK+N+  A+  L+
Sbjct: 2  LTTLAVSNYRTLRDLVMPL-RRLNLITGANGAGKSNVYRALRLLA 45


>gi|282919604|ref|ZP_06327339.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282317414|gb|EFB47788.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           subsp. aureus C427]
          Length = 978

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 35/249 (14%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + +E +   L  +++    + +     
Sbjct: 729 YTSNLSRFNDLTKYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQAQ 788

Query: 207 --ALSSLIMEYVQKENFPHIKLSLTGFL--------DGKFDQSFCALKEEYAKKLFDGR- 255
              LS+ I          +++               D        +L +E+ K++ D R 
Sbjct: 789 VSDLSAQINHMETDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRL 848

Query: 256 ------KMDSMS-----RRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                  ++ +      R T+I  +   + V + +  +      S   ++++ V + ++ 
Sbjct: 849 PQVINEAVEILKHLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISL 908

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNET 361
            +++         L++D+   H D+ +   +   +  +    Q+      K       E 
Sbjct: 909 IKVLRPYY--PFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEV 966

Query: 362 AKFMRISNH 370
               +I   
Sbjct: 967 ITLNKIEEG 975


>gi|257428620|ref|ZP_05605018.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257275461|gb|EEV06948.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
          Length = 978

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 35/249 (14%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + +E +   L  +++    + +     
Sbjct: 729 YTSNLSRFNDLTKYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQAQ 788

Query: 207 --ALSSLIMEYVQKENFPHIKLSLTGFL--------DGKFDQSFCALKEEYAKKLFDGR- 255
              LS+ I          +++               D        +L +E+ K++ D R 
Sbjct: 789 VSDLSAQINHMETDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRL 848

Query: 256 ------KMDSMS-----RRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                  ++ +      R T+I  +   + V + +  +      S   ++++ V + ++ 
Sbjct: 849 PQVINEAVEILKHLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISL 908

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNET 361
            +++         L++D+   H D+ +   +   +  +    Q+      K       E 
Sbjct: 909 IKVLRPYY--PFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEV 966

Query: 362 AKFMRISNH 370
               +I   
Sbjct: 967 ITLNKIEEG 975


>gi|257425955|ref|ZP_05602379.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257271649|gb|EEV03795.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
          Length = 978

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 35/249 (14%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + +E +   L  +++    + +     
Sbjct: 729 YTSNLSRFNDLTKYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQAQ 788

Query: 207 --ALSSLIMEYVQKENFPHIKLSLTGFL--------DGKFDQSFCALKEEYAKKLFDGR- 255
              LS+ I          +++               D        +L +E+ K++ D R 
Sbjct: 789 VSDLSAQINHMETDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRL 848

Query: 256 ------KMDSMS-----RRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                  ++ +      R T+I  +   + V + +  +      S   ++++ V + ++ 
Sbjct: 849 PQVINEAVEILKHLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISL 908

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNET 361
            +++         L++D+   H D+ +   +   +  +    Q+      K       E 
Sbjct: 909 IKVLRPYY--PFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEV 966

Query: 362 AKFMRISNH 370
               +I   
Sbjct: 967 ITLNKIEEG 975


>gi|228998809|ref|ZP_04158395.1| ABC transporter, ATP-binding protein [Bacillus mycoides Rock3-17]
 gi|229006324|ref|ZP_04164008.1| ABC transporter, ATP-binding protein [Bacillus mycoides Rock1-4]
 gi|228754970|gb|EEM04331.1| ABC transporter, ATP-binding protein [Bacillus mycoides Rock1-4]
 gi|228760984|gb|EEM09944.1| ABC transporter, ATP-binding protein [Bacillus mycoides Rock3-17]
          Length = 250

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEA++           + FR
Sbjct: 35 QSLDFHPNVTFIIGENGTGKSTLLEALAIALGFNAEGGTKNFR 77


>gi|255070533|ref|XP_002507348.1| predicted protein [Micromonas sp. RCC299]
 gi|226522623|gb|ACO68606.1| predicted protein [Micromonas sp. RCC299]
          Length = 497

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
           + +   +  + + +F       +  D    I  G +G GK+  LE I+ L         +
Sbjct: 68  LEHNTHLYEIFVQDFAIMKEQTIRLDPGLNIITGQSGSGKSIFLEVIAQLCGA-----GA 122

Query: 61  YADVTRIGSPSFFSTFARVEGMEGLADI 88
             +  R G+ S         G + ++D+
Sbjct: 123 GEEFIRSGAESALIRGKFNIGSDVMSDV 150


>gi|189218066|ref|YP_001938708.1| DNA repair protein ATPase, RecN [Methylacidiphilum infernorum V4]
 gi|189184924|gb|ACD82109.1| DNA repair protein ATPase, RecN [Methylacidiphilum infernorum V4]
          Length = 559

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 50/146 (34%), Gaps = 18/146 (12%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR---GFR 57
           M  +++I+ L + +      L         +  G+ G GK+ +++++  L+  +    F 
Sbjct: 1   MLLKLRIENLALID-----ELEWSLVPGLNVLTGETGAGKSIVIDSLKLLAGEKALPSFL 55

Query: 58  RASYADVTRIGSPSFFSTFA-RVEGMEGLADIS--------IKLETRDDRSVRCLQI-ND 107
           +         G          RV  +     I         ++ E R   + R     N 
Sbjct: 56  KNKDKTGIVEGEFQLSGECGKRVVSLFQEKGIEELDSPFFILRREIRPTGTSRQFINGNL 115

Query: 108 VVIRVVDELNKHLRISWLVPSMDRIF 133
           + + ++ E+ ++L           +F
Sbjct: 116 IPLSLLKEVGENLIDVLGPHDHQSLF 141


>gi|156546762|ref|XP_001605389.1| PREDICTED: similar to ATP-binding cassette sub-family A member 3,
           putative [Nasonia vitripennis]
          Length = 1491

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 12/122 (9%)

Query: 250 KLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISN 309
            L    +      ++ +      L + +  +       S G+++ V +G+ L        
Sbjct: 505 ALLKSERQSRSLVKSQVTIFMQKLKL-FEKRNALPKQLSGGQKRRVCLGMAL-------- 555

Query: 310 TTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNETAKFMRI 367
             G +  ++LDE ++ LD + R  ++ I+  +     I ++  D    D L +    +  
Sbjct: 556 -VGDSSTIILDEPTSGLDPESRRDIWDILLKLRGEKTILISTHDMEEADILGDRVAIVHA 614

Query: 368 SN 369
            N
Sbjct: 615 GN 616


>gi|145296808|ref|YP_001139629.1| hypothetical protein cgR_2711 [Corynebacterium glutamicum R]
 gi|140846728|dbj|BAF55727.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 244

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 15 FRNYASL-RLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          FR       L F A  T+  G+NGVGK+ +LEAI+  +
Sbjct: 27 FRVLREKRTLDFRAPITVITGENGVGKSTLLEAIAINA 64


>gi|159184498|ref|NP_353872.2| ABC transporter, nucleotide binding/ATPase protein [Agrobacterium
           tumefaciens str. C58]
 gi|159139807|gb|AAK86657.2| ABC transporter, nucleotide binding/ATPase protein [Agrobacterium
           tumefaciens str. C58]
          Length = 453

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 28/181 (15%)

Query: 203 EMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSR 262
            +++ L + +    Q E+      SL   + G  DQS   + ++        R+ D   +
Sbjct: 287 RLMSLLQAAVTAAGQIEDGIKATPSL---VAGYVDQSLAEIDDDSTPAALLSRRFDIGDQ 343

Query: 263 RT---LIGPHRSDLIVDYCDKAITIAHGSTGEQ-KVVLVGIFLAHARLISNTTGFAPILL 318
           R    L G       +D   +   IA  S G++ ++ ++ + LA               L
Sbjct: 344 RIHGLLAGAG-----IDMEMQKRRIATLSGGQKARLAMLALRLAE----------PNFYL 388

Query: 319 LDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDS------LNETAKFMRISNHQA 372
           LDE + HLD D +  L   +    +   +   D+S   +      L E  K + + N +A
Sbjct: 389 LDEPTNHLDIDGQETLEAEIISREASCMLVSHDRSFVRTVGTRFWLIEKRKLVEVDNPEA 448

Query: 373 L 373
            
Sbjct: 449 F 449


>gi|78189046|ref|YP_379384.1| ATPase [Chlorobium chlorochromatii CaD3]
 gi|78171245|gb|ABB28341.1| ATPase [Chlorobium chlorochromatii CaD3]
          Length = 421

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 19/85 (22%)

Query: 258 DSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPIL 317
           +     T +   R     +           S GEQ+ V++ + LA             I+
Sbjct: 123 ERAMIYTDVISFRDRFFTEL----------SGGEQQRVVLAMVLAQ---------EPKII 163

Query: 318 LLDEISAHLDEDKRNALFRIVTDIG 342
           +LDE  +HLD + R  + +I+  + 
Sbjct: 164 MLDESISHLDINHRQEVLQILMKLN 188


>gi|84502888|ref|ZP_01001001.1| ABC transporter, ATP-binding protein [Oceanicola batsensis
           HTCC2597]
 gi|84388871|gb|EAQ01741.1| ABC transporter, ATP-binding protein [Oceanicola batsensis
           HTCC2597]
          Length = 551

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 101/265 (38%), Gaps = 34/265 (12%)

Query: 18  YASLRLVFDAQHTI-FVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGSPSFFSTF 76
           + ++ L F     I  VG NG GK+ +L+    ++           D       ++ +  
Sbjct: 24  FENINLNFLPGVKIGVVGVNGAGKSTLLK---IMAGW-------DKD---FQGEAWHAEG 70

Query: 77  ARVEGMEGLADISIKLETRD-------DRSVRCLQINDVVIRVVDE-------LNKHLRI 122
           A+V  +    ++   L+ R         +  +  + N++ +   DE       L   +  
Sbjct: 71  AKVGYLPQEPELDPNLDVRGNVMLGVAGKKAKLDRFNELAMNYSDETADEMAALQDEIDS 130

Query: 123 SWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTE---GYFD 179
             L     +I   +   R    D  V  +    +RR+   + L+   + LL +    + D
Sbjct: 131 QNLWDLDAQIDISMEALRCPPDDADVTTLSGGEKRRVALCKLLLEQPDMLLLDEPTNHLD 190

Query: 180 SSWCSSIEAQMAEL-GVKINIARVE-MINALSSLIMEYVQKENFPHIKLSLTGFLDGKFD 237
           +   + ++  + E  G  + +      ++ ++  I+E  +    P+   + + +L+ K  
Sbjct: 191 AETIAWLQQHLIEYKGTILIVTHDRYFLDDITGWILELDRGRGIPYEG-NYSSWLEQKAK 249

Query: 238 QSFCALKEEYAKKLFDGRKMDSMSR 262
           +     KE+ AK+    R+++ M +
Sbjct: 250 RLEREAKEDKAKQKTLERELEWMRQ 274


>gi|327294469|ref|XP_003231930.1| DNA repair protein Rad50 [Trichophyton rubrum CBS 118892]
 gi|326465875|gb|EGD91328.1| DNA repair protein Rad50 [Trichophyton rubrum CBS 118892]
          Length = 1279

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I    +  F N  S  + F    T+ VG NG GKT I+E + + + G
Sbjct: 5  ISATRVRSFDNTRSETIQFHTPLTLIVGYNGSGKTTIIECLKYATTG 51


>gi|325663719|ref|ZP_08152123.1| hypothetical protein HMPREF0490_02864 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470212|gb|EGC73445.1| hypothetical protein HMPREF0490_02864 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 527

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 70/202 (34%), Gaps = 18/202 (8%)

Query: 169 RNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLS- 227
           R  LL E   +          + E G ++     E      +++ E  +        +  
Sbjct: 343 RRELLREEIAEKQMQY---ENLCEQGEELMEVSEEY-----AVLEEKGRAIQLAEDTIRH 394

Query: 228 LTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHG 287
           L+  +  +F      +  E    + DG K D +          +++ +    + I++   
Sbjct: 395 LSTDVRKEFGTRLNEVSSEILCAITDG-KYDRI-----FIDENTNIYLLQGAQKISVGQV 448

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S G  + +   + +A A L+         ++LDE  A+ DE +     R + +   QI +
Sbjct: 449 SRGTMEQIYFALRMAAAELMYE---EEFPVILDETFAYYDERRLENTLRWLAENKRQIIL 505

Query: 348 TGTDKSVFDSLNETAKFMRISN 369
               +   + L +      ++ 
Sbjct: 506 FTCQRRELEMLRKLGIPYHVNG 527


>gi|313105610|ref|ZP_07791876.1| putative ATPase [Pseudomonas aeruginosa 39016]
 gi|310878378|gb|EFQ36972.1| putative ATPase [Pseudomonas aeruginosa 39016]
          Length = 387

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L +S +R    L +    +  +  G NG GK+N+  A+  L+
Sbjct: 2  LTTLAVSNYRTLRDLVMPL-RRLNLITGANGAGKSNVYRALRLLA 45


>gi|301754245|ref|XP_002913000.1| PREDICTED: DNA repair protein RAD50-like [Ailuropoda melanoleuca]
          Length = 1312

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|294649096|ref|ZP_06726538.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824979|gb|EFF83740.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 460

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 69/396 (17%), Positives = 124/396 (31%), Gaps = 69/396 (17%)

Query: 5   IKIKFLNISE---FRNYASLRLVFDA---QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
           ++I+ +       FR    L+L F       T+ +GD   GKT +L+ I         R 
Sbjct: 1   MQIESVQFKHVGMFR---DLKLEFFPAQHPITLILGDQATGKTTVLKNIYHALSWFSAR- 56

Query: 59  ASYADV------TRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRV 112
             Y D+                  A+V+    L+    +L +    S     IN      
Sbjct: 57  --YKDIRTAGVVIADQDIMLTRLQAKVQIQVQLSS---ELNSNLTESSSAQAIN--TQSC 109

Query: 113 VDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVF------AIDPRHRRRMIDF---E 163
           + +L K      +         G+S    + LD+MV         DP     +I +   E
Sbjct: 110 IWKLFKTYNNQGV---------GISQVETQQLDQMVSLYQKTNQQDPLFGLPLIAYYPAE 160

Query: 164 RLMRGRNRLLTEGYFDSSWCSSIE-------------AQMAELGVKINIARVEMINALS- 209
           R ++  N             S+ +                 E+    N     ++  L  
Sbjct: 161 RFVQEINLQSKNVPGILQKMSAYDLTAIPYTTFSRFFEWFREISDVENAHSAHIVRRLMG 220

Query: 210 SLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH 269
           +   +  Q E    ++  L          +  ALK+       +    D   +       
Sbjct: 221 NDFNQQNQSEMLEQLQQELVNHPKQLSAPNLYALKKSLTTVFPE--LKDIYVQY----VP 274

Query: 270 RSDLIVDYCDKAITIAHGSTGEQ-KVVLVG-----IFLAHARLISNTTGFAPILLLDEIS 323
           +  L+V Y D+ +     S  ++  + LVG     + L +            ILL+D+I 
Sbjct: 275 KLQLMVRYHDQVLPFQQLSASQKTWIALVGDISRRLCLLNQNCFEPCLEGEGILLIDQID 334

Query: 324 AHLDEDKRNALFRIVTDI--GSQIFMTGTDKSVFDS 357
             LD++    +   +       QI  TG    + + 
Sbjct: 335 TQLDQNLCAEILERLHQAFPRLQIIATGNRDELLEH 370


>gi|289705627|ref|ZP_06502016.1| DNA repair protein RecN [Micrococcus luteus SK58]
 gi|289557651|gb|EFD50953.1| DNA repair protein RecN [Micrococcus luteus SK58]
          Length = 580

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 30/161 (18%)

Query: 1   MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGR------ 54
           M + ++I  L +          +  D   T+  G+ G GKT ++ A+  L   R      
Sbjct: 1   MIDHLRISGLGV-----IGEATVDLDPGFTVVTGETGAGKTMVVTALGLLLGARADAGAV 55

Query: 55  -----------GFRRASYADVTRIGSPSFFSTFARVEGMEGLADI----SIKLETRDDRS 99
                      G R A+     R+   +        EG +G  D+    S+       RS
Sbjct: 56  RRGSSRAVVDAGVRVAADHAALRLAQDAGAVV---DEGDDGTRDLVLSRSVTASGEGTRS 112

Query: 100 VRCLQINDVVIRVVDELNKHLRISWLVPSMDRIFSGLSMER 140
                   V + ++ E+   L          R+  G   +R
Sbjct: 113 RAAAGGRSVPVGLLSEIGATLVAVHGQNDQVRL-QGADAQR 152


>gi|281348671|gb|EFB24255.1| hypothetical protein PANDA_000728 [Ailuropoda melanoleuca]
          Length = 1311

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|262403491|ref|ZP_06080049.1| ATP binding protein [Vibrio sp. RC586]
 gi|262349995|gb|EEY99130.1| ATP binding protein [Vibrio sp. RC586]
          Length = 418

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +  K L IS+++ +  + +    + TI  G NG GKT +L
Sbjct: 1  MYFKKLKISKWQQFEEIEIDLHDRITIVTGSNGCGKTTLL 40


>gi|239626995|ref|ZP_04670026.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47_FAA]
 gi|239517141|gb|EEQ57007.1| conserved hypothetical protein [Clostridiales bacterium
          1_7_47FAA]
          Length = 413

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          MT  ++   ++  E R             +   G NG GK+N+LEA+  L+
Sbjct: 22 MTFDMQATAISEHEDRVIKDKDGELYLPVSAIYGPNGGGKSNVLEALHILA 72


>gi|121607486|ref|YP_995293.1| hypothetical protein Veis_0490 [Verminephrobacter eiseniae
          EF01-2]
 gi|121552126|gb|ABM56275.1| conserved hypothetical protein [Verminephrobacter eiseniae
          EF01-2]
          Length = 416

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          +I  L +  +++ A   L    +  + +G NG GK+N +
Sbjct: 13 QISRLVLRGYKSIAECDLEL-RRRNVLIGANGAGKSNFI 50


>gi|73971132|ref|XP_531901.2| PREDICTED: similar to RAD50 homolog isoform 1 [Canis familiaris]
          Length = 1312

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|66808015|ref|XP_637730.1| structural maintenance of chromosome protein [Dictyostelium
           discoideum AX4]
 gi|74996780|sp|Q54LV0|SMC4_DICDI RecName: Full=Structural maintenance of chromosomes protein 4;
           Short=SMC protein 4; Short=SMC-4
 gi|60466163|gb|EAL64226.1| structural maintenance of chromosome protein [Dictyostelium
           discoideum AX4]
          Length = 1415

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 4   RIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--FRRA 59
           R+ I  + +  F++YA +  +  F    +  VG NG GK+N+++A+ F+   R    R  
Sbjct: 157 RLMITKMVMENFKSYAGAQEVGPFHKCFSSVVGPNGSGKSNVIDAMLFVFGYRAKQIRLN 216

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGLA 86
             +++          T  RV       
Sbjct: 217 KISELIHNSENHKNLTNGRVSVHFQEI 243


>gi|300868108|ref|ZP_07112743.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300333882|emb|CBN57923.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 384

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
          I  L +  F+ +A L L F  + T+F G N  GK+++++++  L
Sbjct: 2  ITSLKLLNFKPFAELSLDF-KKLTLFSGLNSTGKSSVMQSLLLL 44


>gi|296390863|ref|ZP_06880338.1| putative ATPase [Pseudomonas aeruginosa PAb1]
          Length = 387

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  L +S +R    L +    +  +  G NG GK+N+  A+  L+
Sbjct: 2  LTTLAVSNYRTLRDLVMPL-RRLNLITGANGAGKSNVYRALRLLA 45


>gi|307729696|ref|YP_003906920.1| SMC domain-containing protein [Burkholderia sp. CCGE1003]
 gi|307584231|gb|ADN57629.1| SMC domain protein [Burkholderia sp. CCGE1003]
          Length = 387

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 16/105 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I+ +R+   L +    +  +  G NG GK+++  ++  L+     R      + R
Sbjct: 2   LSALAIAGYRSLRELIVPLG-RLNVITGANGSGKSSVYRSLRLLADTA--RGGVITSLAR 58

Query: 67  IG-------------SPSFFSTFARVEGMEGLADISIKLETRDDR 98
            G             S S  S  + V+G    A +S++L    +R
Sbjct: 59  EGGLPSTLWAGPERFSRSMLSGESEVQGTRRNAPVSLRLGFAGER 103


>gi|294660238|ref|NP_852885.2| multidrug-like ABC transporter ATP-binding protein [Mycoplasma
           gallisepticum str. R(low)]
 gi|284811893|gb|AAP56453.2| ABC-type multidrug-like transport system ATP-binding protein
           [Mycoplasma gallisepticum str. R(low)]
 gi|284930345|gb|ADC30284.1| ABC-type multidrug-like transport system ATP-binding protein
           [Mycoplasma gallisepticum str. R(high)]
          Length = 234

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 12/82 (14%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDI---GSQ 344
           S+G++K VL+         +        I++LDE +A+LD   R  LF++++ +   G  
Sbjct: 137 SSGQKKKVLL---------MQALINDPEIIILDEPAANLDPTARYQLFKLLSQLHNEGKT 187

Query: 345 IFMTGTDKSVFDSLNETAKFMR 366
           IF++  + S  D   ++   + 
Sbjct: 188 IFISSHNLSEIDKYVDSYTLIH 209


>gi|213410637|ref|XP_002176088.1| conserved hypothetical protein [Schizosaccharomyces japonicus
          yFS275]
 gi|212004135|gb|EEB09795.1| conserved hypothetical protein [Schizosaccharomyces japonicus
          yFS275]
          Length = 1202

 Score = 41.8 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 7/79 (8%)

Query: 5  IKIKFLNISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAI-SFLSPGRGFRRASY 61
          + IK      F++Y            H + VG NG GK+N   AI   LS          
Sbjct: 1  MHIK----KGFKSYKDYTAIEPLSPHHNVVVGRNGSGKSNFFAAIRFVLSDAYTHLSREE 56

Query: 62 ADVTRIGSPSFFSTFARVE 80
                  P      A VE
Sbjct: 57 RQALLHEGPGSTVLSAYVE 75



 Score = 37.6 bits (86), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 279  DKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV 338
            D+ + I   S G++ +  + +  A           AP  +LDE  A+LD   R A+  +V
Sbjct: 1097 DEQLNIQQLSGGQKSLCALTLIFA-----IQRCDPAPFNILDECDANLDAQYRTAIAAMV 1151

Query: 339  TDIGS--QIFMTGTDKSVFDSLNETAKFMRI-SNHQALCI 375
             ++    Q   T       + + +   F  +  NH+   +
Sbjct: 1152 KELSQTSQFICTT---FRPEMIKQADSFFGVLFNHKVSSV 1188


>gi|291541213|emb|CBL14324.1| hypothetical protein RO1_41450 [Roseburia intestinalis XB6B4]
          Length = 561

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          ++IK   I +F    +  + F+    +  G+N  GKT +
Sbjct: 1  MQIKEAIIGQFGKLQNRNISFEPGINVIYGENEAGKTTL 39


>gi|302531436|ref|ZP_07283778.1| predicted protein [Streptomyces sp. AA4]
 gi|302440331|gb|EFL12147.1| predicted protein [Streptomyces sp. AA4]
          Length = 372

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +  + I  F +  S ++   +   + VG NG GK+N ++A+  LS
Sbjct: 6  LSAITIEGFTSIRSAQVPLGS-MNVLVGANGAGKSNFIQALGLLS 49


>gi|217968841|ref|YP_002354075.1| GTP-binding protein [Thauera sp. MZ1T]
 gi|217506168|gb|ACK53179.1| putative GTP-binding protein [Thauera sp. MZ1T]
          Length = 878

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 89/248 (35%), Gaps = 36/248 (14%)

Query: 5   IKIKFLNISEFRNYAS-LRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYA 62
           +++  L + + R +   + +   D    +F G N  GK+ ++ AI      R ++ +S  
Sbjct: 1   MRLLRLKVEQLRRFRQPVEIRDLDPGINLFTGPNESGKSTLVRAIRAAFFER-YKSSSVE 59

Query: 63  DVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIND------VVIRVVDEL 116
           D+   G  S  +    +E         + +++   R    + ++            + +L
Sbjct: 60  DLQPWG-DSAAAPTVELEFESQGKRWKL-VKSFLKRKRCDVSVDGVGFSGEEAEDKLADL 117

Query: 117 NKH--------LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFE----- 163
                          W +P +  I  G   E  + ++     +       + +       
Sbjct: 118 LGFEFPGRGASRPEHWGIPGLLWIEQGAGQEIHKPVEHAGSHLKSVLGASLGEVTSTAGD 177

Query: 164 ----RLMRGRNRLLT-EGYFDSSWCSSIEA------QMAELGVKINIARVEMINALSSLI 212
               R+ R R RLLT  G     + +++EA      + A+L  +I   R + ++ L  L 
Sbjct: 178 ELIARITRERARLLTATGRPTGDFAAALEAHERLAREHADLQGRIRQYRQQ-VDRLGQLR 236

Query: 213 MEYVQKEN 220
            E  + E+
Sbjct: 237 EEQARDES 244


>gi|284004946|ref|NP_001164819.1| DNA repair protein RAD50 [Oryctolagus cuniculus]
 gi|217273043|gb|ACK28136.1| RAD50 homolog isoform 1 (predicted) [Oryctolagus cuniculus]
          Length = 1312

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 6  KIKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          +I+ ++I   R++         + F +  TI VG NG GKT I+E + ++  G
Sbjct: 3  RIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTG 55


>gi|210620570|ref|ZP_03292118.1| hypothetical protein CLOHIR_00061 [Clostridium hiranonis DSM
          13275]
 gi|210155284|gb|EEA86290.1| hypothetical protein CLOHIR_00061 [Clostridium hiranonis DSM
          13275]
          Length = 237

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAISF 49
           L F    T FVG+NG GK+ +LEAI+ 
Sbjct: 33 SLEFSNPITFFVGENGTGKSTLLEAIAV 60


>gi|159044251|ref|YP_001533045.1| zinc import ATP-binding protein [Dinoroseobacter shibae DFL 12]
 gi|157912011|gb|ABV93444.1| zinc import ATP-binding protein [Dinoroseobacter shibae DFL 12]
          Length = 247

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 18 YASLRLVFDAQ-HTIFVGDNGVGKTNILEAI 47
           + + L  +       VG NG GKT++L AI
Sbjct: 19 LSHVDLTLEPGEIVTIVGPNGSGKTSLLRAI 49


>gi|91202371|emb|CAJ72010.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 225

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 274 IVDYCD-KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRN 332
             +  D +     H S G+++ V +   +A             +L+LDE +  LD   R 
Sbjct: 109 YFELNDVRERPPHHLSGGQKRRVALAAAMAM---------EPDLLILDEPANDLDHRHRR 159

Query: 333 ALFRIVTDIGSQIFMTGTDKSVFDSLNETAKFM 365
            L   +  +   + +   D  + + L E    M
Sbjct: 160 KLITYLKGLRIALLVASHDLRLIEELTERCILM 192


>gi|49484085|ref|YP_041309.1| hypothetical protein SAR1934 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257431257|ref|ZP_05607634.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433937|ref|ZP_05610295.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436853|ref|ZP_05612897.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282904418|ref|ZP_06312306.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906241|ref|ZP_06314096.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282911466|ref|ZP_06319268.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914638|ref|ZP_06322424.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|282924984|ref|ZP_06332650.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           subsp. aureus C101]
 gi|283958596|ref|ZP_06376047.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503710|ref|ZP_06667557.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510731|ref|ZP_06669436.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           subsp. aureus M809]
 gi|293537273|ref|ZP_06671953.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428421|ref|ZP_06821050.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297590612|ref|ZP_06949250.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|49242214|emb|CAG40921.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257278205|gb|EEV08853.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257282030|gb|EEV12167.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284204|gb|EEV14327.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313350|gb|EFB43746.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282321819|gb|EFB52144.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325161|gb|EFB55471.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282331533|gb|EFB61047.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282596036|gb|EFC01000.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790745|gb|EFC29562.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920118|gb|EFD97186.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095376|gb|EFE25641.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466622|gb|EFF09143.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127821|gb|EFG57458.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297575498|gb|EFH94214.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312437692|gb|ADQ76763.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315195754|gb|EFU26141.1| hypothetical protein CGSSa00_08855 [Staphylococcus aureus subsp.
           aureus CGS00]
          Length = 978

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 35/249 (14%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + +E +   L  +++    + +     
Sbjct: 729 YTSNLSRFNDLTKYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQAQ 788

Query: 207 --ALSSLIMEYVQKENFPHIKLSLTGFL--------DGKFDQSFCALKEEYAKKLFDGR- 255
              LS+ I          +++               D        +L +E+ K++ D R 
Sbjct: 789 VSDLSAQINHMETDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRL 848

Query: 256 ------KMDSMS-----RRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                  ++ +      R T+I  +   + V + +  +      S   ++++ V + ++ 
Sbjct: 849 PQVINEAVEILKHLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISL 908

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNET 361
            +++         L++D+   H D+ +   +   +  +    Q+      K       E 
Sbjct: 909 IKVLRPYY--PFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEV 966

Query: 362 AKFMRISNH 370
               +I   
Sbjct: 967 ITLNKIEEG 975


>gi|330995617|ref|ZP_08319517.1| RecF/RecN/SMC protein [Paraprevotella xylaniphila YIT 11841]
 gi|329575023|gb|EGG56576.1| RecF/RecN/SMC protein [Paraprevotella xylaniphila YIT 11841]
          Length = 364

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          I+ + I  +++   L L  + +  + +G NGVGK+N +
Sbjct: 2  IEQVIIKNYKSIRDLSLPLN-RLNVLIGSNGVGKSNFI 38


>gi|255994268|ref|ZP_05427403.1| conserved hypothetical protein [Eubacterium saphenum ATCC 49989]
 gi|255993936|gb|EEU04025.1| conserved hypothetical protein [Eubacterium saphenum ATCC 49989]
          Length = 688

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNIL 44
          + ++ + +  FR      L F  + ++ +G N  GKT+ L
Sbjct: 1  MILRKMKVKNFRLLKDFELEFKDELSLVIGKNNCGKTSAL 40


>gi|258405615|ref|YP_003198357.1| SMC domain-containing protein [Desulfohalobium retbaense DSM 5692]
 gi|257797842|gb|ACV68779.1| SMC domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 1199

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 94/286 (32%), Gaps = 35/286 (12%)

Query: 8   KFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAIS----------FLSPGRGFR 57
           + L +  +  + +  +V   + T+  G+N VGKT IL+A+            L+   G  
Sbjct: 16  QRLFLVGYHLFPATEMVLHPRMTVLSGNNAVGKTTILDALQTIFVCHLKHIHLNVASGHS 75

Query: 58  RASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVD--- 114
             +       G       +A VE         I +  R       ++++  V+  +    
Sbjct: 76  TRNLT-----GQLGGPVAWACVEITGHEVVQGIGVRLRQKPGGEGVELSPFVLHHLAPGL 130

Query: 115 ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLT 174
           EL       ++ P M  +         +        + P     + ++ R +        
Sbjct: 131 ELFLDQESGYITPDMQHL----GQRVLKTAPTPAAQVQP--FDSVDNYHRFLH------R 178

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM---EYVQKENFPHIKLSLTGF 231
           EG F      S ++  A+L  +++  R++ +      ++      +K  F  +   +   
Sbjct: 179 EGLFPIDLSGSGKSHFADLWRQVSQPRLDKLRQFLEYMLCPPSQTKKLGFDTVDRLIKDR 238

Query: 232 LDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT--LIGPHRSDLIV 275
              +             ++L D  +    +R T   +G   +D  +
Sbjct: 239 QRIERLLQRLEHFRALRQELEDQTQRLDQARFTALALGVSLADARI 284


>gi|108758619|ref|YP_628431.1| hypothetical protein MXAN_0148 [Myxococcus xanthus DK 1622]
 gi|108462499|gb|ABF87684.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 1074

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 10/230 (4%)

Query: 140  RRRFLDRMVFAIDPRHRRRMIDFERLMRGR-NRLLTEGYFDSSWCSSIEAQMAELGVKIN 198
            R+  +D             + D +   + R   +LTE    S      E   A   ++I 
Sbjct: 833  RQALIDVGGEQGLRVELESLRDRQAEAQDRLKAVLTERGALSHQLEQWENDDALAKLRIV 892

Query: 199  IARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMD 258
                    +L +   E  ++     + L+L      +F++       + A + F      
Sbjct: 893  E------ESLRARAAELAKQYAADRLTLALLARARRRFEEEQQPRVVQLASEHFATLTQG 946

Query: 259  SMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILL 318
               R  +      +L V    +  + A  S G ++ + +   LA  R    T G  P L+
Sbjct: 947  RYQRVFIPTGEERELRVGDGQRDWSAAQLSRGTREQLYLAFRLAVVRDFGETRGALP-LI 1005

Query: 319  LDEISAHLDEDKRNALFRIVTDIG--SQIFMTGTDKSVFDSLNETAKFMR 366
            +D++  + D ++      ++  +    Q+        + D+       ++
Sbjct: 1006 VDDVLVNFDPERARGAIHLLAKLSEHQQVIAFTCHPWLRDAFAAEGARVQ 1055


>gi|116670659|ref|YP_831592.1| ABC transporter-like protein [Arthrobacter sp. FB24]
 gi|116610768|gb|ABK03492.1| ABC transporter related protein [Arthrobacter sp. FB24]
          Length = 256

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 18/133 (13%)

Query: 241 CALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIF 300
             ++    + +   R+    +   L      +          +I   S GE++++ +   
Sbjct: 101 EDVELSLRRSIRKTRERQEAAAAIL------NRFGLMALADQSIYELSGGERQLMALAAV 154

Query: 301 LAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
           LA             +L+LDE S  LD   R  L R +  +  QI M+  D  +   ++ 
Sbjct: 155 LAV---------EPAVLVLDEPSTLLDLRNRELLRRTLAGLSQQIVMSTHDLELVRDMD- 204

Query: 361 TAKFMRISNHQAL 373
             + + + +   +
Sbjct: 205 --RVLVVESGHVV 215


>gi|332662594|ref|YP_004445382.1| AAA ATPase [Haliscomenobacter hydrossis DSM 1100]
 gi|332331408|gb|AEE48509.1| AAA ATPase [Haliscomenobacter hydrossis DSM 1100]
          Length = 408

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 7  IKFLNISEFRNYASLRLVFD---AQHTIFVGDNGVGKTNIL 44
          +  L + + R+  +L +       +H I  G NG GKT++L
Sbjct: 6  VTELKLKKVRHLENLSISLSKETPKHLILTGKNGSGKTSVL 46


>gi|283469314|emb|CAQ48525.1| trans-Golgi membrane protein p230 [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 734

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 28/122 (22%)

Query: 7   IKFLNISE---FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           IK +++     +RNY  ++     +     G NG GKT I       S   G    S   
Sbjct: 2   IKKISLQNIATYRNYVEIK---PKKINFIYGSNGSGKTTI-------SNLIGRFNKSDDC 51

Query: 64  VT---------------RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDV 108
           V                +    +F  +   ++G+  L + SI L+   +   R +Q+N+ 
Sbjct: 52  VIETKKNSNSSILVYNKKFVEKNFSQSDIGLKGIFTLGENSINLQDNLNELRRKIQVNEE 111

Query: 109 VI 110
            I
Sbjct: 112 NI 113


>gi|238027144|ref|YP_002911375.1| DNA repair ATPase [Burkholderia glumae BGR1]
 gi|237876338|gb|ACR28671.1| ATPase involved in DNA repair [Burkholderia glumae BGR1]
          Length = 589

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD- 63
          +KI  +         S  +       +F G NG GK+++ EA+     G   R +   + 
Sbjct: 1  MKITGIYAQNVLGVRSADIRLGQPIALFAGPNGAGKSSLQEAVRMALTGDTVRVSLKKEY 60

Query: 64 --VTRIGSPSF 72
            +   G+ S 
Sbjct: 61 GALVTEGAQSG 71


>gi|228992763|ref|ZP_04152689.1| ABC transporter, ATP-binding protein [Bacillus pseudomycoides DSM
          12442]
 gi|228767095|gb|EEM15732.1| ABC transporter, ATP-binding protein [Bacillus pseudomycoides DSM
          12442]
          Length = 250

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L F    T  +G+NG GK+ +LEA++           + FR
Sbjct: 35 QSLDFHPNVTFIIGENGTGKSTLLEALAIALGFNAEGGTKNFR 77


>gi|239815760|ref|YP_002944670.1| ABC transporter [Variovorax paradoxus S110]
 gi|239802337|gb|ACS19404.1| ABC transporter related [Variovorax paradoxus S110]
          Length = 247

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 2  TNRIKIKFLNISEFRNYA---SLRLVFDAQ-HTIFVGDNGVGKTNILEAI 47
             I++  L ++ +R +     L   F     T  VG NG GKT++L AI
Sbjct: 3  PPAIRLTNLTVA-YRGHPAVHHLSGEFAPGSLTAIVGPNGAGKTSLLAAI 51


>gi|182419848|ref|ZP_02951088.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237666875|ref|ZP_04526860.1| conserved hypothetical protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
 gi|182376396|gb|EDT73978.1| conserved hypothetical protein [Clostridium butyricum 5521]
 gi|237658074|gb|EEP55629.1| conserved hypothetical protein [Clostridium butyricum E4 str.
          BoNT E BL5262]
          Length = 673

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          ++IK + I  F    +  + F     +  G+N  GK++I
Sbjct: 1  MRIKSICIINFAGLKNKMIEFKEGFNLVYGENESGKSSI 39


>gi|158521391|ref|YP_001529261.1| hypothetical protein Dole_1380 [Desulfococcus oleovorans Hxd3]
 gi|158510217|gb|ABW67184.1| conserved hypothetical protein [Desulfococcus oleovorans Hxd3]
          Length = 234

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 17/61 (27%)

Query: 6  KIKFLNISE---------------FRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFL 50
           I  + +                 FR   + ++ F++  T FVG+NG GK+ +LEA++  
Sbjct: 4  HITRVTLHHETYPSDCHYPFSLPIFR--QTRQIRFESPVTFFVGENGTGKSTLLEALALA 61

Query: 51 S 51
           
Sbjct: 62 G 62


>gi|37522648|ref|NP_926025.1| hypothetical protein gll3079 [Gloeobacter violaceus PCC 7421]
 gi|35213649|dbj|BAC91020.1| gll3079 [Gloeobacter violaceus PCC 7421]
          Length = 378

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG 55
          +K   I+ FR +  L +   ++  + VG N  GK+  LEA+   +    
Sbjct: 2  LKSFMINNFRLFRHLEVGRLSRVNLVVGKNNAGKSAFLEAVELYASNAS 50


>gi|194336535|ref|YP_002018329.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309012|gb|ACF43712.1| SMC domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 1171

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 5  IKIKFLNISEFRNYASLRLVFD---AQHTIFVGDNGVGKTNILEAISFLSPGRGFRRA 59
          +KIK L +  F  ++   L F        I  G N  GK++ + A+  L  G   R +
Sbjct: 1  MKIKRLELKAFGPFSGQLLDFSSPLPGLHIVYGPNEAGKSSAMRALQALFFGFPLRTS 58


>gi|227891728|ref|ZP_04009533.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus salivarius ATCC 11741]
 gi|227866453|gb|EEJ73874.1| ABC superfamily ATP binding cassette transporter, ABC protein
           [Lactobacillus salivarius ATCC 11741]
          Length = 493

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 288 STGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFM 347
           S GEQ  VL+ +                 +LLDE + HLD   R  +   + +      +
Sbjct: 117 SGGEQTKVLLALAF---------KNKNSFVLLDEPTNHLDAHTRQQVATYLNNKKQGFII 167

Query: 348 TGTDKSVFDSLNETAKFMRISN 369
           T  D+   + + +    +   N
Sbjct: 168 TSHDRDFLNQVIDHTLVIEAQN 189


>gi|195114514|ref|XP_002001812.1| GI14952 [Drosophila mojavensis]
 gi|193912387|gb|EDW11254.1| GI14952 [Drosophila mojavensis]
          Length = 1396

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
            R+ IK +  + F++YA  + L  F    T  +G NG GK+N+++++ F+   R  R
Sbjct: 78  PRLIIKRIVNNNFKSYAGEVELGPFHHSFTAIIGPNGSGKSNVIDSMMFVFGCRANR 134


>gi|53723908|ref|YP_103212.1| ABC transporter ATP-binding protein [Burkholderia mallei ATCC
           23344]
 gi|67639481|ref|ZP_00438334.1| ABC transporter, ATP-binding protein [Burkholderia mallei GB8 horse
           4]
 gi|121600971|ref|YP_993391.1| ABC transporter, ATP-binding protein [Burkholderia mallei SAVP1]
 gi|124384335|ref|YP_001029173.1| ABC transporter, ATP-binding protein [Burkholderia mallei NCTC
           10229]
 gi|126449715|ref|YP_001080898.1| ABC transporter, ATP-binding protein [Burkholderia mallei NCTC
           10247]
 gi|166999685|ref|ZP_02265520.1| ABC transporter, ATP-binding protein [Burkholderia mallei PRL-20]
 gi|254178671|ref|ZP_04885326.1| ABC transporter, ATP-binding protein [Burkholderia mallei ATCC
           10399]
 gi|254200165|ref|ZP_04906531.1| ABC transporter, ATP-binding protein [Burkholderia mallei FMH]
 gi|254206503|ref|ZP_04912855.1| ABC transporter, ATP-binding protein [Burkholderia mallei JHU]
 gi|254358087|ref|ZP_04974360.1| ABC transporter, ATP-binding protein [Burkholderia mallei
           2002721280]
 gi|52427331|gb|AAU47924.1| ABC transporter, ATP-binding protein [Burkholderia mallei ATCC
           23344]
 gi|121229781|gb|ABM52299.1| ABC transporter, ATP-binding protein [Burkholderia mallei SAVP1]
 gi|124292355|gb|ABN01624.1| ABC transporter, ATP-binding protein [Burkholderia mallei NCTC
           10229]
 gi|126242585|gb|ABO05678.1| ABC transporter, ATP-binding protein [Burkholderia mallei NCTC
           10247]
 gi|147749761|gb|EDK56835.1| ABC transporter, ATP-binding protein [Burkholderia mallei FMH]
 gi|147753946|gb|EDK61011.1| ABC transporter, ATP-binding protein [Burkholderia mallei JHU]
 gi|148027214|gb|EDK85235.1| ABC transporter, ATP-binding protein [Burkholderia mallei
           2002721280]
 gi|160699710|gb|EDP89680.1| ABC transporter, ATP-binding protein [Burkholderia mallei ATCC
           10399]
 gi|238520028|gb|EEP83492.1| ABC transporter, ATP-binding protein [Burkholderia mallei GB8 horse
           4]
 gi|243064335|gb|EES46521.1| ABC transporter, ATP-binding protein [Burkholderia mallei PRL-20]
          Length = 646

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 40/205 (19%)

Query: 168 GRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            R  LL   G   S+   ++   +A L  ++   R   I   +   +E +++        
Sbjct: 344 QRIGLLGANGQGKSTLIKTLAGTLAPLSGELRTGRGLTIGYFAQHQLETLRE-------- 395

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                     D S  A     A    +    D +      G                IA 
Sbjct: 396 ----------DDSALAHLARLAPDTREQELRDFLGGFNFSG----------EMATAPIAP 435

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE+  + + + +              +LLLDE + HLD + R+AL   +      + 
Sbjct: 436 FSGGEKARLALALII---------WRKPNLLLLDEPTNHLDLETRHALTMALAQFEGTLI 486

Query: 347 MTGTDKSVFDSLNETAKFMRISNHQ 371
           +   D+ +  +  +  +FM ++ H+
Sbjct: 487 LVSHDRHLLRATTD--QFMLVAKHR 509


>gi|23335273|ref|ZP_00120510.1| COG0497: ATPase involved in DNA repair [Bifidobacterium longum
           DJO10A]
 gi|189439656|ref|YP_001954737.1| DNA repair ATPase [Bifidobacterium longum DJO10A]
 gi|312133058|ref|YP_004000397.1| recn [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481838|ref|ZP_07940866.1| DNA repair protein RecN [Bifidobacterium sp. 12_1_47BFAA]
 gi|189428091|gb|ACD98239.1| ATPase for DNA repair [Bifidobacterium longum DJO10A]
 gi|311774050|gb|ADQ03538.1| RecN [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916775|gb|EFV38169.1| DNA repair protein RecN [Bifidobacterium sp. 12_1_47BFAA]
          Length = 608

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 73/260 (28%), Gaps = 53/260 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYADV 64
           ++ L+I          +   A  T   G+ G GK+ +L AI  +S G     R ++ AD 
Sbjct: 2   LEELDIRNLGPIREATIAPAAGMTAITGETGAGKSMLLSAIRLVSGGAAESSRVSAGADE 61

Query: 65  TRIGSPSFFSTFARVEGMEGLA------------------------------DISIKLET 94
               +    S  A      G                                D  + L  
Sbjct: 62  AWAQAIFALSDDAVASEHSGDTNDAGSGDADSGFTGAAAAVAKAHDAGVDPEDGELFLSR 121

Query: 95  RDDRSVRCLQINDVVIRVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP 153
               S R   +          L      +  +    D++    S  +R FLDR+      
Sbjct: 122 TVRASGRSRAVLGGKSVPRSVLGAIAGELVTIHGQTDQLKIAASSRQREFLDRVAGD--- 178

Query: 154 RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
                +  + +                   ++++ ++  L  + + AR +  + L   I 
Sbjct: 179 --EAELAAYRKAW--------------DALAAMDERLERLRSQESSARQQA-DYLRESID 221

Query: 214 EYVQKENFPHIKLSLTGFLD 233
              + +  P     L    +
Sbjct: 222 RINRIDPQPGEDEELKARRE 241


>gi|322688782|ref|YP_004208516.1| DNA repair protein RecN [Bifidobacterium longum subsp. infantis
           157F]
 gi|320460118|dbj|BAJ70738.1| DNA repair protein RecN [Bifidobacterium longum subsp. infantis
           157F]
          Length = 608

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 73/260 (28%), Gaps = 53/260 (20%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG--RGFRRASYADV 64
           ++ L+I          +   A  T   G+ G GK+ +L AI  +S G     R ++ AD 
Sbjct: 2   LEELDIRNLGPIREATIAPAAGMTAITGETGAGKSMLLSAIRLVSGGAAESSRVSAGADE 61

Query: 65  TRIGSPSFFSTFARVEGMEGLA------------------------------DISIKLET 94
               +    S  A      G                                D  + L  
Sbjct: 62  AWAQAIFALSDDAVASEHSGDTNDAGSGDADSGFTGAAAAVAKAHDAGVDPEDGELFLSR 121

Query: 95  RDDRSVRCLQINDVVIRVVDELNKHLR-ISWLVPSMDRIFSGLSMERRRFLDRMVFAIDP 153
               S R   +          L      +  +    D++    S  +R FLDR+      
Sbjct: 122 TVRASGRSRAVLGGKSVPRSVLGAIAGELVTIHGQTDQLKIAASSRQREFLDRVAGD--- 178

Query: 154 RHRRRMIDFERLMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIM 213
                +  + +                   ++++ ++  L  + + AR +  + L   I 
Sbjct: 179 --EAELAAYRKAW--------------DALAAMDERLERLRSQESSARQQA-DYLRESID 221

Query: 214 EYVQKENFPHIKLSLTGFLD 233
              + +  P     L    +
Sbjct: 222 RINRIDPQPGEDEELKARRE 241


>gi|297157285|gb|ADI06997.1| putative ABC transporter ATP-binding protein [Streptomyces
          bingchenggensis BCW-1]
          Length = 265

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 16/80 (20%)

Query: 1  MTNRIKIKFLNISEFRN--YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG--- 55
          M +   ++ L +   R     ++ L F       +G NG GKT+++  ++ ++P      
Sbjct: 1  MNSAASVRKLTVRHRRTTALDAVDLAFGTGVHGLLGPNGAGKTSLIRVLATVAPPTSGRV 60

Query: 56 -----------FRRASYADV 64
                      R A    +
Sbjct: 61 ELLGGDVSAPAHRTAVRRRL 80


>gi|302661507|ref|XP_003022421.1| hypothetical protein TRV_03485 [Trichophyton verrucosum HKI 0517]
 gi|291186364|gb|EFE41803.1| hypothetical protein TRV_03485 [Trichophyton verrucosum HKI 0517]
          Length = 1126

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 12/57 (21%)

Query: 5  IKIKFLNISEFR----------NYASLRL--VFDAQHTIFVGDNGVGKTNILEAISF 49
          + IK + I  F+          +Y    +   F  +H + VG NG GK+N   AI F
Sbjct: 1  MFIKQIIIQGFKRAFANGILYNSYKDQTVIEPFSPKHNVIVGRNGSGKSNFFAAIRF 57


>gi|300781452|ref|ZP_07091306.1| ATPase [Corynebacterium genitalium ATCC 33030]
 gi|300533159|gb|EFK54220.1| ATPase [Corynebacterium genitalium ATCC 33030]
          Length = 881

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 5  IKIKFLNISEFRNYASLRLV--FDAQHTIFVGDNGVGKTNILEAI 47
          ++I  L I   R    L L    D    +  GDN  GK+ IL+A+
Sbjct: 1  MRIHSLIIDNVRAVEHLELTDIPDTGVILIHGDNEAGKSTILDAL 45


>gi|253735277|ref|ZP_04869442.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|253726684|gb|EES95413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH130]
          Length = 978

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 35/249 (14%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + +E +   L  +++    + +     
Sbjct: 729 YTSNLSRFNDLTKYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQAQ 788

Query: 207 --ALSSLIMEYVQKENFPHIKLSLTGFL--------DGKFDQSFCALKEEYAKKLFDGR- 255
              LS+ I          +++               D        +L +E+ K++ D R 
Sbjct: 789 VSDLSAQINHMETDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRL 848

Query: 256 ------KMDSMS-----RRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                  ++ +      R T+I  +   + V + +  +      S   ++++ V + ++ 
Sbjct: 849 PQVINEAVEILKHLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISL 908

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNET 361
            +++         L++D+   H D+ +   +   +  +    Q+      K       E 
Sbjct: 909 IKVLRPYY--PFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEV 966

Query: 362 AKFMRISNH 370
               +I   
Sbjct: 967 ITLNKIEEG 975


>gi|218281573|ref|ZP_03488002.1| hypothetical protein EUBIFOR_00567 [Eubacterium biforme DSM 3989]
 gi|218217362|gb|EEC90900.1| hypothetical protein EUBIFOR_00567 [Eubacterium biforme DSM 3989]
          Length = 236

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 12 ISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          I   R+     L F    T F G+NG GK+ +LEA++ 
Sbjct: 20 IQSIRSIDQ--LTFSKPVTFFCGENGSGKSTLLEALAI 55


>gi|195488694|ref|XP_002092422.1| GE14184 [Drosophila yakuba]
 gi|194178523|gb|EDW92134.1| GE14184 [Drosophila yakuba]
          Length = 1303

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 7  IKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ L+I   R++         + F +  T+ +G+NG GKT ++E + +   G
Sbjct: 4  IESLSIQGIRSFGTYAEDLQSIKFSSPVTLILGENGCGKTTVVECLKYALTG 55



 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 32/231 (13%)

Query: 165  LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR-VEMINALSSLIMEY----VQKE 219
            L + R++              I +Q+ +L  +I+  R  E +        E     +  E
Sbjct: 1052 LTKQRDKATVRKGELLGQLGEINSQVNKLQREIDEPRFKESLKNFRKASYEIEVTRLCIE 1111

Query: 220  NFPHIKLSLTGFL---DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRT--LIGPHRSDLI 274
            +    +L+L   L     +  +    L  EY +K++ G  +D +  +T  +     +D  
Sbjct: 1112 DLGQYRLALEWALIQFHSEKMEMINRLIREYWRKIYRGNDIDYIQVKTDEVSTEASADRR 1171

Query: 275  VDYCDKAIT---------IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
              Y  + +              S G++ +  + I LA A   S+  G   +L LDE + +
Sbjct: 1172 KTYNYRVVQSKNYSEIEMRGRCSAGQRVLASLIIRLALAETFSSNCG---VLALDEPTTN 1228

Query: 326  LDEDKRNALFRIV----TDIGSQ-----IFMTGTDKSVFDSLNETAKFMRI 367
            LD    N+L   +     +  SQ     I +T  D++   SL +   + R+
Sbjct: 1229 LDRANINSLCEALNCIVEERQSQSNFMLIIITH-DENFVSSLGKITSYHRV 1278


>gi|167903282|ref|ZP_02490487.1| ABC transporter, ATP-binding protein [Burkholderia pseudomallei
           NCTC 13177]
          Length = 646

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 40/205 (19%)

Query: 168 GRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            R  LL   G   S+   ++   +A L  ++   R   I   +   +E +++        
Sbjct: 344 QRIGLLGANGQGKSTLIKTLAGTLAPLSGELRTGRGLTIGYFAQHQLETLRE-------- 395

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                     D S  A     A    +    D +      G                IA 
Sbjct: 396 ----------DDSALAHLARLAPDTREQELRDFLGGFNFSG----------EMATAPIAP 435

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE+  + + + +              +LLLDE + HLD + R+AL   +      + 
Sbjct: 436 FSGGEKARLALALII---------WRKPNLLLLDEPTNHLDLETRHALTMALAQFEGTLI 486

Query: 347 MTGTDKSVFDSLNETAKFMRISNHQ 371
           +   D+ +  +  +  +FM ++ H+
Sbjct: 487 LVSHDRHLLRATTD--QFMLVAKHR 509


>gi|165932810|ref|YP_001649599.1| DNA repair protein [Rickettsia rickettsii str. Iowa]
 gi|165907897|gb|ABY72193.1| DNA repair protein [Rickettsia rickettsii str. Iowa]
          Length = 545

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
           L++  F     L + F+    +  G+ G GK+ +L+AI F    +     +  ++ + G
Sbjct: 4  SLSVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILFCLGYK-----TSNNIIKPG 58

Query: 69 SPSFFS 74
                
Sbjct: 59 KEYAVV 64


>gi|159480416|ref|XP_001698278.1| structural maintenance of chromosomes protein 3 [Chlamydomonas
           reinhardtii]
 gi|158282018|gb|EDP07771.1| structural maintenance of chromosomes protein 3 [Chlamydomonas
           reinhardtii]
          Length = 1121

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 13/110 (11%)

Query: 12  ISEFRNYASLRL--VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69
           I  F++Y        FD +  + VG NG GK+N   AI F          + A +   G 
Sbjct: 3   IEGFKSYKDQTSTDEFDPKINVVVGANGSGKSNFFHAIRF--------VLNDAFINMRGE 54

Query: 70  PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
                    ++  E     +I    +DD ++    IN   +  + E    
Sbjct: 55  ERLQLLH--IDRSEVRLRRTINA-KKDDYTLDKKHINKSEVSSLLESAGF 101


>gi|90019747|ref|YP_525574.1| hypothetical protein Sde_0098 [Saccharophagus degradans 2-40]
 gi|89949347|gb|ABD79362.1| conserved hypothetical protein [Saccharophagus degradans 2-40]
          Length = 1214

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          + +K      + N   L   F     +F G NG GKT   +AI  L   
Sbjct: 1  MFLKKGVFVNWGNIPHLEFDFGP-INLFSGGNGSGKTTAADAIQTLMTA 48


>gi|158312746|ref|YP_001505254.1| hypothetical protein Franean1_0892 [Frankia sp. EAN1pec]
 gi|158108151|gb|ABW10348.1| conserved hypothetical protein [Frankia sp. EAN1pec]
          Length = 890

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 5   IKIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           + ++ + +  FR    L    L      T+  G NG GK++  EA      G
Sbjct: 82  VHLESIGVQGFRGIGPLAVLPLRPGPGLTLVTGRNGSGKSSFAEAAEIALTG 133


>gi|157828108|ref|YP_001494350.1| DNA repair protein RecN [Rickettsia rickettsii str. 'Sheila
          Smith']
 gi|157800589|gb|ABV75842.1| DNA repair protein RecN [Rickettsia rickettsii str. 'Sheila
          Smith']
          Length = 545

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 9  FLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIG 68
           L++  F     L + F+    +  G+ G GK+ +L+AI F    +     +  ++ + G
Sbjct: 4  SLSVKNFILIDELEIEFNKGLCVITGETGAGKSILLDAILFCLGYK-----TSNNIIKPG 58

Query: 69 SPSFFS 74
                
Sbjct: 59 KEYAVV 64


>gi|331088069|ref|ZP_08336990.1| hypothetical protein HMPREF1025_00573 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|330409025|gb|EGG88484.1| hypothetical protein HMPREF1025_00573 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 238

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 16/59 (27%)

Query: 22 RLVFDAQHTIFVGDNGVGKTNILEAI--------------SFLSPGRGFRRASYADVTR 66
           L+F    T FVG+NG GK+ +LEA+                 S       +   +  R
Sbjct: 33 ELIFHNSITFFVGENGSGKSTLLEALAVACGFNPEGGTKNYIFSTYDSH--SQLHEAIR 89


>gi|329732954|gb|EGG69298.1| hypothetical protein SA21193_1300 [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 978

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 35/249 (14%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + +E +   L  +++    + +     
Sbjct: 729 YTSNLSRFNDLTKYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQAQ 788

Query: 207 --ALSSLIMEYVQKENFPHIKLSLTGFL--------DGKFDQSFCALKEEYAKKLFDGR- 255
              LS+ I          +++               D        +L +E+ K++ D R 
Sbjct: 789 VSDLSAQINHMETDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRL 848

Query: 256 ------KMDSMS-----RRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                  ++ +      R T+I  +   + V + +  +      S   ++++ V + ++ 
Sbjct: 849 PQVINEAVEILKYLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISL 908

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNET 361
            +++         L++D+   H D+ +   +   +  +    Q+      K       E 
Sbjct: 909 IKVLRPYY--PFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEV 966

Query: 362 AKFMRISNH 370
               +I   
Sbjct: 967 ITLNKIEEG 975


>gi|297568675|ref|YP_003690019.1| DNA repair protein RecN [Desulfurivibrio alkaliphilus AHT2]
 gi|296924590|gb|ADH85400.1| DNA repair protein RecN [Desulfurivibrio alkaliphilus AHT2]
          Length = 582

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M   + IK L +        LRL   +   +  G+ G GK+ IL+A+  L+ GR     +
Sbjct: 1  MLKELWIKNLALV-----EELRLSPGSGLAVLTGETGAGKSIILQAVHLLAGGR-----A 50

Query: 61 YADVTRIGSPSF 72
           AD  R G+   
Sbjct: 51 SADWVRGGAEQA 62


>gi|255929013|ref|YP_003097325.1| recombination endonuclease sunbunit [Synechococcus phage S-RSM4]
 gi|255705299|emb|CAR63288.1| recombination endonuclease sunbunit [Synechococcus phage S-RSM4]
          Length = 576

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 46/103 (44%), Gaps = 16/103 (15%)

Query: 8   KFLNISEFRN----YASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD 63
           K +    F +    ++ + L   ++  + +G NG GK+ IL+A++F   G+ FR+ +   
Sbjct: 5   KKIRWKNFLSTGNVFSEVDLQ-ASKTNLIIGSNGAGKSTILDALTFSLFGKPFRKINKPM 63

Query: 64  VTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQIN 106
           +              +   + + +I   +  ++ + VR ++ N
Sbjct: 64  LVN-----------SINEKDCVTEIEFSIGKKEYKVVRGIKPN 95


>gi|253741418|gb|EES98288.1| Hypothetical protein GL50581_4484 [Giardia intestinalis ATCC
          50581]
          Length = 1400

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 6  KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYAD-V 64
          +I  +    FR     ++        FV  NG GKT +L A++ L  G         D +
Sbjct: 10 QIIGIECYHFRGIGHAKVYTLPTINYFVAPNGFGKTTLLYAVA-LCLGSQHPDLKDTDSL 68

Query: 65 TRIGS 69
           +   
Sbjct: 69 IQENQ 73


>gi|228860990|ref|YP_002854013.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          RB51]
 gi|227438664|gb|ACP30976.1| gp46 recombination endonuclease subunit [Enterobacteria phage
          RB51]
          Length = 562

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 5  IKIKFLNISEFRNYASL-----RLVFDA-QHTIFVGDNGVGKTNILEAISFLSPGRGFRR 58
          +K   LN  +++N  S+      +  D  Q T+  G NG GK+ +LEAI+F   G+ FR 
Sbjct: 1  MKSFKLNRVKYKNIMSVGQNGVDIQLDKVQKTLITGRNGGGKSTMLEAITFGLFGKPFRD 60

Query: 59 ASYADVTR 66
               +  
Sbjct: 61 VKKGQLIN 68


>gi|169628638|ref|YP_001702287.1| hypothetical protein MAB_1548c [Mycobacterium abscessus ATCC
          19977]
 gi|169240605|emb|CAM61633.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 399

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 22/102 (21%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT- 65
          +  + I  +R+   + L   AQ T+  G NG GK+++  A+  L+           ++  
Sbjct: 2  LTTVAIRGYRSLRDIVLPL-AQLTVITGANGTGKSSLYRALQLLADCGS------GEIIG 54

Query: 66 ---RIG-----------SPSFFSTFARVEGMEGLADISIKLE 93
             R G           S +       V+G      +SI+L 
Sbjct: 55 SLARQGGLQSAMWAGPESLNRARRTGVVQGTRRTRPVSIELG 96


>gi|158520918|ref|YP_001528788.1| ATP-dependent OLD family endonuclease [Desulfococcus oleovorans
          Hxd3]
 gi|158509744|gb|ABW66711.1| ATP-dependent endonuclease of the OLD family-like protein
          [Desulfococcus oleovorans Hxd3]
          Length = 672

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 5  IKIKFLNISEFRNYASLRL-VFDAQHTIFVGDNGVGKTNILEAISFLS 51
          +++K   +  +R+     L   +   TI VG N  GKT +L+A+  LS
Sbjct: 1  MRLKKARVQNYRSIIDSGLFDIEKLKTILVGPNEAGKTVLLKALQQLS 48


>gi|148557622|ref|YP_001265204.1| DNA repair protein RecN [Sphingomonas wittichii RW1]
 gi|148502812|gb|ABQ71066.1| DNA repair protein RecN [Sphingomonas wittichii RW1]
          Length = 553

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L I +     +L L F        G+ G GK+ +L+++  L+ G      + + + R
Sbjct: 2  LTTLAIRDVVLIEALDLEFGPGLGTLTGETGAGKSILLDSLG-LALG----TRADSGLVR 56

Query: 67 IGSPSFFSTFA 77
           G+     +  
Sbjct: 57 TGAAQAMVSAG 67


>gi|147677536|ref|YP_001211751.1| DNA repair ATPase [Pelotomaculum thermopropionicum SI]
 gi|146273633|dbj|BAF59382.1| ATPase involved in DNA repair [Pelotomaculum thermopropionicum SI]
          Length = 562

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 37/208 (17%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L I       +L++ F A   +  G+ G GK+ I+E++   +  R     +  +  R
Sbjct: 2   LLNLYIKNLGIIDTLKMDFQAGFNVLTGETGAGKSIIVESLLIATGCR-----ASEEYIR 56

Query: 67  IGSPSFFSTFARV-------------EGMEGLADISIKLETRDDRSVRCL-QINDVVI-- 110
            G+       A               +G+E   D  + L    +R  + + ++N  V+  
Sbjct: 57  SGAEKALVQAAFDISGLKPVASLLAEQGLEQPEDGILVLLREINRHGKNICRVNGQVVPL 116

Query: 111 --------RVVDELNKHLRISWLVPS-MDRIFS--GLSMERRRFLDRMVFAIDPRHRRRM 159
                   R+VD   +H + S L P    R+    G            V A+  R +   
Sbjct: 117 GLYRSIGTRLVDLHVQHEQNSLLDPDRHGRLLDRFGGPAVIGAL--EEVKALYDRWKEAR 174

Query: 160 IDFERLMR---GRNRLLTEGYFDSSWCS 184
             ++RL      RNR +    F      
Sbjct: 175 QRYDRLRADEGERNRRMDMLRFQVEEIE 202


>gi|77456988|ref|YP_346493.1| DNA repair protein RecN [Pseudomonas fluorescens Pf0-1]
 gi|77380991|gb|ABA72504.1| DNA replication and repair protein RecN [Pseudomonas fluorescens
           Pf0-1]
          Length = 557

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 56/197 (28%), Gaps = 26/197 (13%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           +  L++  +     L L  D   ++  G+ G GK+ +L+A+      R     + + V R
Sbjct: 2   LVHLSVHNYAIVEHLDLELDRGMSVITGETGAGKSIMLDALGLTLGDR-----ADSGVVR 56

Query: 67  IGSPSFFSTF-----------ARVEGMEGLADISIKLETRDDRSVRCL-QINDVVIRVVD 114
            G+                  A +   +   D    L        R    IN     + D
Sbjct: 57  PGADKADILATFDLADIPEASAWLAERDLEIDGPCILRRVITSEGRSRGYINGTPCPLGD 116

Query: 115 --ELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMVFAID-----PRHRRRMIDFERLMR 167
              L + L           +    +   RR LD    A D         +R     + + 
Sbjct: 117 LKALGELLIDIHSQHEHQSLLK--TDTHRRLLDEYAGATDLARQVHLAAQRWRQTRQELE 174

Query: 168 GRNRLLTEGYFDSSWCS 184
             +    E        S
Sbjct: 175 RLSNSGDEQRARHQLLS 191


>gi|62184840|ref|YP_219625.1| putative ATP-binding ABC transport protein [Chlamydophila abortus
           S26/3]
 gi|62147907|emb|CAH63654.1| putative ATP-binding ABC transport protein [Chlamydophila abortus
           S26/3]
          Length = 239

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 280 KAITIAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVT 339
           K    +H S G+ + VL+   LA             +L+LDE +A++D + +  + +I+ 
Sbjct: 133 KDACFSHLSGGQIQRVLLARALAS---------QPKLLILDEPTANIDPENQQRILQILK 183

Query: 340 DIGSQIFMTGTDKSVFDSLNETAKFMRIS 368
           ++ +Q  +      +  + +   K   +S
Sbjct: 184 ELNTQCTILMITHDLHHTTSNFNKVFYMS 212


>gi|126438859|ref|YP_001059487.1| ABC transporter, ATP-binding protein [Burkholderia pseudomallei
           668]
 gi|126218352|gb|ABN81858.1| ABC transporter, ATP-binding protein [Burkholderia pseudomallei
           668]
          Length = 646

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 40/205 (19%)

Query: 168 GRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            R  LL   G   S+   ++   +A L  ++   R   I   +   +E +++        
Sbjct: 344 QRIGLLGANGQGKSTLIKTLAGTLAPLSGELRTGRGLTIGYFAQHQLETLRE-------- 395

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                     D S  A     A    +    D +      G                IA 
Sbjct: 396 ----------DDSALAHLARLAPDTREQELRDFLGGFNFSG----------EMATAPIAP 435

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE+  + + + +              +LLLDE + HLD + R+AL   +      + 
Sbjct: 436 FSGGEKARLALALII---------WRKPNLLLLDEPTNHLDLETRHALTMALAQFEGTLI 486

Query: 347 MTGTDKSVFDSLNETAKFMRISNHQ 371
           +   D+ +  +  +  +FM ++ H+
Sbjct: 487 LVSHDRHLLRATTD--QFMLVAKHR 509


>gi|296282798|ref|ZP_06860796.1| ATP-binding protein [Citromicrobium bathyomarinum JL354]
          Length = 764

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 9/51 (17%)

Query: 8   KFLNISEFRNYASLRLVFDAQHT---------IFVGDNGVGKTNILEAISF 49
           + + I  F++  ++ +   A  T         + +G+N  GK+ ILEAI+ 
Sbjct: 319 RRIVIRNFKSLENIEVRLPAPSTSGEPNAAALLILGENAAGKSTILEAIAI 369


>gi|291534371|emb|CBL07483.1| hypothetical protein ROI_01380 [Roseburia intestinalis M50/1]
          Length = 561

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 5  IKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNI 43
          ++IK   I +F    +  + F+    +  G+N  GKT +
Sbjct: 1  MQIKEAIIGQFGKLQNRNISFEPGINVIYGENEAGKTTL 39


>gi|269914207|gb|ACZ52623.1| FI13085p [Drosophila melanogaster]
          Length = 1322

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 7  IKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ L+I   R++         + F +  T+ +G+NG GKT ++E + +   G
Sbjct: 8  IESLSIQGIRSFGTYADDLQSIKFSSPVTLILGENGCGKTTVVECLKYALTG 59



 Score = 36.8 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 32/231 (13%)

Query: 165  LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR-VEMINALSSLIMEY----VQKE 219
            L + R++              I +Q+ +L  +I+  R  E +        E     +  E
Sbjct: 1071 LTKQRDKATVRKGELLGQLGEIHSQVNKLQREIDEPRFKESLKNFRKANYEIEVTRLCIE 1130

Query: 220  NFPHIKLSLTGFL---DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH--RSDLI 274
            +    +L+L   L     +  +    L  EY +K++ G  +D +  +T        +D  
Sbjct: 1131 DLGQYRLALEWALIQFHSEKMEMINRLIREYWRKIYRGNDIDYIQVKTDEVSSDASADRR 1190

Query: 275  VDYCDKAIT---------IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
              Y  + +              S G++ +  + I LA A   S+  G   +L LDE + +
Sbjct: 1191 KTYNYRVVQSKNYSEIEMRGRCSAGQRVLASLIIRLALAETFSSNCG---VLALDEPTTN 1247

Query: 326  LDEDKRNALFRIV----TDIGSQ-----IFMTGTDKSVFDSLNETAKFMRI 367
            LD    N+L   +     +  SQ     I +T  D++   SL +   + R+
Sbjct: 1248 LDRANINSLCEALNCIVEERQSQSNFMLIIITH-DENFVSSLGKITSYHRV 1297


>gi|229821412|ref|YP_002882938.1| ABC transporter related [Beutenbergia cavernae DSM 12333]
 gi|229567325|gb|ACQ81176.1| ABC transporter related [Beutenbergia cavernae DSM 12333]
          Length = 561

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 13/113 (11%)

Query: 248 AKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQ-KVVLVGIFLAHARL 306
             +L      D  + RTL G    D   ++ D  I +   S G++ ++ L  + +A    
Sbjct: 124 RAELAQVWDADVRAARTLAGLRLGDPDSEFGD--IPVGRLSGGQRTRLGLAALLIAQ--- 178

Query: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLN 359
                     LLLDE + HLD+D    L   +  +   + +   D+   D + 
Sbjct: 179 -------PAALLLDEPTNHLDDDAAEYLALALRALPGAVVLASHDRVFLDEVA 224


>gi|195386590|ref|XP_002051987.1| GJ24094 [Drosophila virilis]
 gi|194148444|gb|EDW64142.1| GJ24094 [Drosophila virilis]
          Length = 1390

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 3   NRIKIKFLNISEFRNYA-SLRL-VFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFR 57
            R+ IK +    F++YA  + L  F    T  +G NG GK+N+++++ F+   R  R
Sbjct: 78  PRLIIKRIVNYNFKSYAGEVELGPFHHSFTAIIGPNGSGKSNVIDSMMFVFGCRANR 134


>gi|194882203|ref|XP_001975202.1| GG22190 [Drosophila erecta]
 gi|190658389|gb|EDV55602.1| GG22190 [Drosophila erecta]
          Length = 1303

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 7  IKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ L+I   R++         + F +  T+ +G+NG GKT ++E + +   G
Sbjct: 4  IESLSIQGIRSFGTYAEDLQSIKFSSPVTLILGENGCGKTTVVECLKYALTG 55



 Score = 36.4 bits (83), Expect = 7.9,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 85/231 (36%), Gaps = 32/231 (13%)

Query: 165  LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR-VEMINALSSLIMEY----VQKE 219
            L   R++              I  Q+ +L  +I+  R  E +        E     +  E
Sbjct: 1052 LTNQRDKATVRKGELLGQLGEINNQVKKLQREIDEPRFKESLKNFRKANYEIEVTRLCIE 1111

Query: 220  NFPHIKLSLTGFL---DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH--RSDLI 274
            +    +L+L   L     +  +    L  EY +K++ G  +D +  +T        +D  
Sbjct: 1112 DLGQYRLALEWALIQFHSEKMEMINRLIREYWRKIYRGNDIDYIQVKTDEVSADASADRR 1171

Query: 275  VDYCDKAIT---------IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
              Y  + +              S G++ +  + I LA A   S+  G   +L LDE + +
Sbjct: 1172 KTYNYRVVQSKNYSEIEMRGRCSAGQRVLASLIIRLALAETFSSNCG---VLALDEPTTN 1228

Query: 326  LDEDKRNALFRIV----TDIGSQ-----IFMTGTDKSVFDSLNETAKFMRI 367
            LD    N+L   +     +  SQ     I +T  D++   SL +   + R+
Sbjct: 1229 LDRANINSLCEALNCIVEERQSQSNFMLIIITH-DENFVSSLGKITSYHRV 1278


>gi|147834715|emb|CAN72711.1| hypothetical protein VITISV_018097 [Vitis vinifera]
          Length = 244

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 2  TNRIKIKFLNISEFRNYASLR---LVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
           +++ IK +     R++       + F    T+ VG NG GKT I+E +     G
Sbjct: 4  VDKMLIKGI-----RSFDPENKHVIAFFKPLTLIVGPNGAGKTTIIECLKLSCTG 53


>gi|148268314|ref|YP_001247257.1| hypothetical protein SaurJH9_1896 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394376|ref|YP_001317051.1| hypothetical protein SaurJH1_1930 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|257793798|ref|ZP_05642777.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258420758|ref|ZP_05683697.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258447319|ref|ZP_05695466.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258448198|ref|ZP_05696325.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258453369|ref|ZP_05701352.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|282928581|ref|ZP_06336180.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           A10102]
 gi|295406149|ref|ZP_06815957.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           A8819]
 gi|297244927|ref|ZP_06928804.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           A8796]
 gi|147741383|gb|ABQ49681.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946828|gb|ABR52764.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257787770|gb|EEV26110.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257843362|gb|EEV67772.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257853906|gb|EEV76862.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257858437|gb|EEV81313.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257864461|gb|EEV87206.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|282589790|gb|EFB94875.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           A10102]
 gi|285817523|gb|ADC38010.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           04-02981]
 gi|294969146|gb|EFG45167.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           A8819]
 gi|297178007|gb|EFH37255.1| DNA double-strand break repair rad50 ATPase [Staphylococcus aureus
           A8796]
 gi|315130513|gb|EFT86499.1| hypothetical protein CGSSa03_09720 [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|329727342|gb|EGG63798.1| hypothetical protein SA21172_0706 [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 978

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 35/249 (14%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + +E +   L  +++    + +     
Sbjct: 729 YTSNLSRFNDLTKYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQGQ 788

Query: 207 --ALSSLIMEYVQKENFPHIKLSLTGFL--------DGKFDQSFCALKEEYAKKLFDGR- 255
              LS+ I          +++               D        +L +E+ K++ D R 
Sbjct: 789 VSDLSAQINHMETDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRL 848

Query: 256 ------KMDSMS-----RRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                  ++ +      R T+I  +   + V + +  +      S   ++++ V + ++ 
Sbjct: 849 PQVINEAVEILKHLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISL 908

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNET 361
            +++         L++D+   H D+ +   +   +  +    Q+      K       E 
Sbjct: 909 IKVLRPYY--PFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEV 966

Query: 362 AKFMRISNH 370
               +I   
Sbjct: 967 ITLNKIEEG 975


>gi|74318048|ref|YP_315788.1| DNA repair protein RecN [Thiobacillus denitrificans ATCC 25259]
 gi|74057543|gb|AAZ97983.1| DNA repair protein RecN [Thiobacillus denitrificans ATCC 25259]
          Length = 551

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 23/43 (53%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISF 49
          +  L+I  +    ++ L F    T+  G+ G GK+ +++A++ 
Sbjct: 2  LSHLSIRNYLLVEAVELDFGPGLTVLTGETGAGKSILVDALAL 44


>gi|28317081|gb|AAO39559.1| LP09268p [Drosophila melanogaster]
          Length = 1322

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 7  IKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ L+I   R++         + F +  T+ +G+NG GKT ++E + +   G
Sbjct: 8  IESLSIQGIRSFGTYADDLQSIKFSSPVTLILGENGCGKTTVVECLKYALTG 59



 Score = 37.6 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 118/336 (35%), Gaps = 52/336 (15%)

Query: 60   SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
               ++            A +       + +IK E  + ++V     ++  ++ +++    
Sbjct: 986  KLDEIIMASKDKLRKLEAEISLKTDELE-TIKTECSNQQTVERDLKDNRELKQLEDKEAK 1044

Query: 120  LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
            LR                 E  + LD+ +  +D        +   L + R++        
Sbjct: 1045 LR-----------------ESCQVLDKQLGNLD--FHSVSKEKVNLTKQRDKATVRKGEL 1085

Query: 180  SSWCSSIEAQMAELGVKINIAR-VEMINALSSLIMEY----VQKENFPHIKLSLTGFL-- 232
                  I +Q+ +L  +I+  R  E +        E     +  E+    +L+L   L  
Sbjct: 1086 LGQLGEIHSQVNKLQREIDEPRFKESLKNFRKANYEIEVTRLCIEDLGQYRLALEWALIQ 1145

Query: 233  -DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH--RSDLIVDYCDKAIT------ 283
               +  +    L  EY +K++ G  +D +  +T        +D    Y  + +       
Sbjct: 1146 FHSEKMEMINRLIREYWRKIYRGNDIDYIQVKTDEVSSDASADRRKTYNYRVVQSKNYSE 1205

Query: 284  ---IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-- 338
                   S G++ +  + I LA A   S+  G   +L LDE + +LD    N+L   +  
Sbjct: 1206 IEMRGRCSAGQRVLASLIIRLALAETFSSNCG---VLALDEPTTNLDRANINSLCEALNC 1262

Query: 339  --TDIGSQ-----IFMTGTDKSVFDSLNETAKFMRI 367
               +  SQ     I +T  D++   SL +   + R+
Sbjct: 1263 IVEERQSQSNFMLIIITH-DENFVSSLGKITSYHRV 1297


>gi|53719785|ref|YP_108771.1| putative ABC transporter ATP-binding protein [Burkholderia
           pseudomallei K96243]
 gi|126454765|ref|YP_001066770.1| ABC transporter, ATP-binding protein [Burkholderia pseudomallei
           1106a]
 gi|167911523|ref|ZP_02498614.1| ABC transporter, ATP-binding protein [Burkholderia pseudomallei
           112]
 gi|167919533|ref|ZP_02506624.1| ABC transporter, ATP-binding protein [Burkholderia pseudomallei
           BCC215]
 gi|242316395|ref|ZP_04815411.1| ABC transporter, ATP-binding protein [Burkholderia pseudomallei
           1106b]
 gi|254189310|ref|ZP_04895821.1| ABC transporter, ATP-binding protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|52210199|emb|CAH36178.1| putative ABC transport system, ATP-binding protein [Burkholderia
           pseudomallei K96243]
 gi|126228407|gb|ABN91947.1| ABC transporter, ATP-binding protein [Burkholderia pseudomallei
           1106a]
 gi|157936989|gb|EDO92659.1| ABC transporter, ATP-binding protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|242139634|gb|EES26036.1| ABC transporter, ATP-binding protein [Burkholderia pseudomallei
           1106b]
          Length = 646

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 69/205 (33%), Gaps = 40/205 (19%)

Query: 168 GRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            R  LL   G   S+   ++   +A L  ++   R   I   +   +E +++        
Sbjct: 344 QRIGLLGANGQGKSTLIKTLAGTLAPLSGELRTGRGLTIGYFAQHQLETLRE-------- 395

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
                     D S  A     A    +    D +      G                IA 
Sbjct: 396 ----------DDSALAHLARLAPDTREQELRDFLGGFNFSG----------EMATAPIAP 435

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE+  + + + +              +LLLDE + HLD + R+AL   +      + 
Sbjct: 436 FSGGEKARLALALII---------WRKPNLLLLDEPTNHLDLETRHALTMALAQFEGTLI 486

Query: 347 MTGTDKSVFDSLNETAKFMRISNHQ 371
           +   D+ +  +  +  +FM ++ H+
Sbjct: 487 LVSHDRHLLRATTD--QFMLVAKHR 509


>gi|262164474|ref|ZP_06032212.1| ABC-type transporter ATP-binding protein [Vibrio mimicus VM223]
 gi|262026854|gb|EEY45521.1| ABC-type transporter ATP-binding protein [Vibrio mimicus VM223]
          Length = 558

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 19/195 (9%)

Query: 175 EGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDG 234
            G   S+    ++A++     +I   R   I  L        Q     H++L+     + 
Sbjct: 78  NGVGKSTLFKLLQAELLPDHGQIEWQRHVQIGYLDQHAQMNEQLTIREHLQLTFKALYEL 137

Query: 235 KFDQ-SFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITI--------- 284
           + +  S  A  E+        R  +  ++      +  D  V++  + + I         
Sbjct: 138 EAEMMSIYANPEQCVNSHALQRAAEIQTKLESHAFYTLDTQVEHVAQGLGIVQLGLNTQL 197

Query: 285 AHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQ 344
            H S G++  V++   L              +LLLDE + +LD    + L   +      
Sbjct: 198 RHLSGGQRHKVILAALLLQ---------SPDVLLLDEPTNYLDAVHIDWLADYLNAFQGA 248

Query: 345 IFMTGTDKSVFDSLN 359
             +   D++  + + 
Sbjct: 249 FMVISHDRAFLNRIA 263


>gi|253315174|ref|ZP_04838387.1| hypothetical protein SauraC_03188 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
          Length = 978

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 35/249 (14%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + +E +   L  +++    + +     
Sbjct: 729 YTSNLSRFNDLTKYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQAQ 788

Query: 207 --ALSSLIMEYVQKENFPHIKLSLTGFL--------DGKFDQSFCALKEEYAKKLFDGR- 255
              LS+ I          +++               D        +L +E+ K++ D R 
Sbjct: 789 VSDLSAQINHMETDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRL 848

Query: 256 ------KMDSMS-----RRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                  ++ +      R T+I  +   + V + +  +      S   ++++ V + ++ 
Sbjct: 849 PQVINEAVEILKHLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISL 908

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNET 361
            +++         L++D+   H D+ +   +   +  +    Q+      K       E 
Sbjct: 909 IKVLRPYY--PFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEV 966

Query: 362 AKFMRISNH 370
               +I   
Sbjct: 967 ITLNKIEEG 975


>gi|229075729|ref|ZP_04208707.1| ABC transporter, ATP-binding protein [Bacillus cereus Rock4-18]
 gi|229098492|ref|ZP_04229434.1| ABC transporter, ATP-binding protein [Bacillus cereus Rock3-29]
 gi|229104630|ref|ZP_04235292.1| ABC transporter, ATP-binding protein [Bacillus cereus Rock3-28]
 gi|229117519|ref|ZP_04246891.1| ABC transporter, ATP-binding protein [Bacillus cereus Rock1-3]
 gi|228665839|gb|EEL21309.1| ABC transporter, ATP-binding protein [Bacillus cereus Rock1-3]
 gi|228678694|gb|EEL32909.1| ABC transporter, ATP-binding protein [Bacillus cereus Rock3-28]
 gi|228684922|gb|EEL38858.1| ABC transporter, ATP-binding protein [Bacillus cereus Rock3-29]
 gi|228707387|gb|EEL59582.1| ABC transporter, ATP-binding protein [Bacillus cereus Rock4-18]
          Length = 250

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 21 LRLVFDAQHTIFVGDNGVGKTNILEAISFL------SPGRGFR 57
            L+F    T  +G+NG GK+ +LEAI+           + FR
Sbjct: 34 QSLLFHPNVTFIIGENGTGKSTLLEAIAIALGFNAEGGTKNFR 76


>gi|226693630|sp|Q9W252|RAD50_DROME RecName: Full=DNA repair protein RAD50
          Length = 1318

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 7  IKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ L+I   R++         + F +  T+ +G+NG GKT ++E + +   G
Sbjct: 4  IESLSIQGIRSFGTYADDLQSIKFSSPVTLILGENGCGKTTVVECLKYALTG 55



 Score = 36.8 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 32/231 (13%)

Query: 165  LMRGRNRLLTEGYFDSSWCSSIEAQMAELGVKINIAR-VEMINALSSLIMEY----VQKE 219
            L + R++              I +Q+ +L  +I+  R  E +        E     +  E
Sbjct: 1067 LTKQRDKATVRKGELLGQLGEIHSQVNKLQREIDEPRFKESLKNFRKANYEIEVTRLCIE 1126

Query: 220  NFPHIKLSLTGFL---DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH--RSDLI 274
            +    +L+L   L     +  +    L  EY +K++ G  +D +  +T        +D  
Sbjct: 1127 DLGQYRLALEWALIQFHSEKMEMINRLIREYWRKIYRGNDIDYIQVKTDEVSSDASADRR 1186

Query: 275  VDYCDKAIT---------IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAH 325
              Y  + +              S G++ +  + I LA A   S+  G   +L LDE + +
Sbjct: 1187 KTYNYRVVQSKNYSEIEMRGRCSAGQRVLASLIIRLALAETFSSNCG---VLALDEPTTN 1243

Query: 326  LDEDKRNALFRIV----TDIGSQ-----IFMTGTDKSVFDSLNETAKFMRI 367
            LD    N+L   +     +  SQ     I +T  D++   SL +   + R+
Sbjct: 1244 LDRANINSLCEALNCIVEERQSQSNFMLIIITH-DENFVSSLGKITSYHRV 1293


>gi|172040775|ref|YP_001800489.1| recombination and DNA repair [Corynebacterium urealyticum DSM
          7109]
 gi|171852079|emb|CAQ05055.1| recombination and DNA repair [Corynebacterium urealyticum DSM
          7109]
          Length = 558

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 15/87 (17%)

Query: 1  MTNRIKIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRAS 60
          M + + I  L +            F +  T+  G+ G GKT ++ ++  LS   G R  +
Sbjct: 1  MLHDLHITNLGV-----IEEATAEFASGLTVVTGETGAGKTMVVSSLRLLS---GHR--A 50

Query: 61 YADVTRIGSPSFFSTFARVEGMEGLAD 87
           A   R GS       A VEG+    D
Sbjct: 51 DASKVRAGSER-----ASVEGVFSHDD 72


>gi|126459941|ref|YP_001056219.1| ABC transporter related [Pyrobaculum calidifontis JCM 11548]
 gi|126249662|gb|ABO08753.1| ABC transporter related [Pyrobaculum calidifontis JCM 11548]
          Length = 250

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 14/109 (12%)

Query: 257 MDSMSRR-TLIGPHRSDLIVDYCD----KAITIAHGSTGEQKVVLVGIFLAHARLISNTT 311
            D +     ++G  R D  V            +   S G+++ V + I  +         
Sbjct: 83  RDELEFYWQVLGGERRDWAVGLLGLKELMGEKVGRLSHGQRRRVELAIVFSL-------- 134

Query: 312 GFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVFDSLNE 360
               + LLDE    LD   ++A+   + ++G  +  T  +    + + +
Sbjct: 135 -KRRVYLLDEPLKGLDVQYKDAVLSALRELGPYVIFTTHEPEAVEKVAQ 182



 Score = 37.6 bits (86), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 10/25 (40%)

Query: 20 SLRLVFDAQHTIFVGDNGVGKTNIL 44
                    T  VG NG GKT +L
Sbjct: 17 DAAFEVGPGVTALVGPNGSGKTTLL 41


>gi|15924833|ref|NP_372367.1| hypothetical protein SAV1843 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927417|ref|NP_374950.1| hypothetical protein SA1661 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283513|ref|NP_646601.1| hypothetical protein MW1784 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486660|ref|YP_043881.1| hypothetical protein SAS1764 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|156980159|ref|YP_001442418.1| hypothetical protein SAHV_1828 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|255006631|ref|ZP_05145232.2| hypothetical protein SauraM_09180 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258413735|ref|ZP_05682008.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258438419|ref|ZP_05689703.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258443864|ref|ZP_05692203.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|269203480|ref|YP_003282749.1| hypothetical protein SAAV_1862 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282895141|ref|ZP_06303360.1| DNA double-strand break repair ATPase [Staphylococcus aureus A8117]
 gi|296276025|ref|ZP_06858532.1| hypothetical protein SauraMR_06737 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207441|ref|ZP_06923878.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300911526|ref|ZP_07128971.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|13701636|dbj|BAB42929.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247615|dbj|BAB58005.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204954|dbj|BAB95649.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245103|emb|CAG43569.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|156722294|dbj|BAF78711.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257839522|gb|EEV63993.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257848463|gb|EEV72454.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257851270|gb|EEV75213.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|262075770|gb|ACY11743.1| hypothetical protein SAAV_1862 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282762485|gb|EFC02626.1| DNA double-strand break repair ATPase [Staphylococcus aureus A8117]
 gi|283471114|emb|CAQ50325.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ST398]
 gi|296887904|gb|EFH26800.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300887158|gb|EFK82358.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|312830215|emb|CBX35057.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
          Length = 978

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 35/249 (14%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + +E +   L  +++    + +     
Sbjct: 729 YTSNLSRFNDLTKYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQAQ 788

Query: 207 --ALSSLIMEYVQKENFPHIKLSLTGFL--------DGKFDQSFCALKEEYAKKLFDGR- 255
              LS+ I          +++               D        +L +E+ K++ D R 
Sbjct: 789 VSDLSAQINHMETDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRL 848

Query: 256 ------KMDSMS-----RRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                  ++ +      R T+I  +   + V + +  +      S   ++++ V + ++ 
Sbjct: 849 PQVINEAVEILKHLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISL 908

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNET 361
            +++         L++D+   H D+ +   +   +  +    Q+      K       E 
Sbjct: 909 IKVLRPYY--PFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEV 966

Query: 362 AKFMRISNH 370
               +I   
Sbjct: 967 ITLNKIEEG 975


>gi|254252043|ref|ZP_04945361.1| ATPase component of ABC transporter [Burkholderia dolosa AUO158]
 gi|124894652|gb|EAY68532.1| ATPase component of ABC transporter [Burkholderia dolosa AUO158]
          Length = 611

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 73/205 (35%), Gaps = 40/205 (19%)

Query: 168 GRNRLL-TEGYFDSSWCSSIEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKL 226
            R  LL   G   S+   ++   +A L   +   +   I   +   +E +++++ P   L
Sbjct: 344 QRIGLLGANGQGKSTLIKTLAGTLAPLSGHVREGKGLTIGYFAQHQLETLREDDSPLAHL 403

Query: 227 SLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAH 286
           +          +     +E+  +    G         +  GP                  
Sbjct: 404 A----------RLAPDTREQELRDFLGGFNFSGDMATSATGPF----------------- 436

Query: 287 GSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIF 346
            S GE+  + + + +              +LLLDE + HLD + R+AL   +      + 
Sbjct: 437 -SGGEKARLALALIIWQ---------KPNLLLLDEPTNHLDLETRHALTMALAQFDGTLI 486

Query: 347 MTGTDKSVFDSLNETAKFMRISNHQ 371
           +   D+ +  +  +  +FM ++NH+
Sbjct: 487 LVSHDRHLLRATTD--QFMLVANHR 509


>gi|312890434|ref|ZP_07749971.1| ATPase [Mucilaginibacter paludis DSM 18603]
 gi|311297204|gb|EFQ74336.1| ATPase [Mucilaginibacter paludis DSM 18603]
          Length = 443

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 5  IKIKFLNISEFRNYASLRLVFD------AQHTIFVGDNGVGKTNILEAISFLSPG 53
          + ++ +++   + +    +             +  G+NG GK+ IL+A+S L  G
Sbjct: 1  MWVEEISLDNIKCFEKQTIKLGTKKEPYPWINLL-GENGTGKSTILQALSLLLAG 54


>gi|312076882|ref|XP_003141059.1| hypothetical protein LOAG_05474 [Loa loa]
 gi|307763776|gb|EFO23010.1| hypothetical protein LOAG_05474 [Loa loa]
          Length = 1079

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 6   KIKFLNISEFRNYASLRLVFDA-QHTIFV--GDNGVGKTNILEAISFLSPGRG---FRRA 59
           +I  + +  F  + SL++ FD      F   G NG GK+ +  A++    GRG    R  
Sbjct: 25  RIASIELFNFMCHESLKINFDVLNRNCFFIGGSNGSGKSALFAALNMGLGGRGSQNERGN 84

Query: 60  SYADVTRIGSPSFFSTFARVEGMEGL 85
           +     + G               G 
Sbjct: 85  AVKQYIKDGQSRAKVRIVLTNRGFGR 110


>gi|298253923|ref|ZP_06977510.1| DNA repair protein RecN [Gardnerella vaginalis 5-1]
 gi|297532066|gb|EFH71041.1| DNA repair protein RecN [Gardnerella vaginalis 5-1]
          Length = 594

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 36/301 (11%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRG----------- 55
           ++ L I      +   +   +  T   G+ G GK+ +L AI  +S  +            
Sbjct: 2   LEELEIRNLGPISHALITPSSHMTAITGETGAGKSMLLSAIKLISGSKAEVARISPNAKE 61

Query: 56  ------FRRASYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVV 109
                 F     +++      S        E  E  +D+ +      +   R       V
Sbjct: 62  AWVQGIFSIPKTSELIDAVGKSGIELEPS-ENDENKSDMYVSRTVPQEGRSRATISGFAV 120

Query: 110 IRVVDELNKHLRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDFERLMR 167
            + V E     R+  +    D++    + ++R  LD +     +  ++      ++    
Sbjct: 121 PKTVLEQV-CSRLIVIHGQSDQLRIATNSKQRELLDTVSKNSELLKQYACAYQAWKDAKE 179

Query: 168 GRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMINALSSLIMEYVQK 218
             NRL  +          +   +A +           ++   R   I   + ++      
Sbjct: 180 TCNRLENQASSSRQRADYLRESLARIRDVNPLPNEDKELRAKRER-IENSAQIVKAV--S 236

Query: 219 ENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYC 278
                +  S   +   +  +  C L ++ ++ L + R  DS      I     D+     
Sbjct: 237 IALASLDSSQIDYGASESSEDACFLVDKASQALRNIRVDDSF---NSIANQLDDIHAQLD 293

Query: 279 D 279
           D
Sbjct: 294 D 294


>gi|297243601|ref|ZP_06927532.1| DNA repair protein RecN [Gardnerella vaginalis AMD]
 gi|296888352|gb|EFH27093.1| DNA repair protein RecN [Gardnerella vaginalis AMD]
          Length = 597

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 97/306 (31%), Gaps = 46/306 (15%)

Query: 7   IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
           ++ L I      +   +   +  T   G+ G GK+ +L AI  +S  +       A+V R
Sbjct: 2   LEELEIRNLGPISHALITPSSHMTAITGETGAGKSMLLSAIKLISGSK-------AEVAR 54

Query: 67  IG---SPSFFSTFARV----EGMEGLADISIKLETRDDRSVRCLQINDVVI----RVVDE 115
           I      ++      +    E ++ +    I+LE  ++   +        +    R    
Sbjct: 55  ISPNAKEAWVQGIFSIPKTSELVDAVGKSGIELEPSENDENKSDMYVSRTVPQEGRSRAT 114

Query: 116 LNKH-----------LRISWLVPSMDRIFSGLSMERRRFLDRMV--FAIDPRHRRRMIDF 162
           ++              R+  +    D++    + ++R  LD +     +  ++      +
Sbjct: 115 ISGFAVPKTVLEQVCSRLIVIHGQSDQLRIATNSKQRELLDTVSKNSELLKQYACAYQAW 174

Query: 163 ERLMRGRNRLLTEGYFDSSWCSSIEAQMAEL---------GVKINIARVEMINALSSLIM 213
           +      NRL  +          +   +A +           ++   R   I   + ++ 
Sbjct: 175 KDAKDACNRLENQASSSRQRADYLRESLARIRDVNPFPNEDKELRAKRER-IENSAQIVK 233

Query: 214 EYVQKENFPHIKLSLTGFLDGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPHRSDL 273
                     +  S   +   +  +  C L ++ ++ L + R  DS      I     D+
Sbjct: 234 AV--SIALASLDSSQIDYGASESSEDACFLVDKASQALRNIRVDDSF---NSIANQLDDI 288

Query: 274 IVDYCD 279
                D
Sbjct: 289 HAQLDD 294


>gi|294011615|ref|YP_003545075.1| DNA repair protein RecN [Sphingobium japonicum UT26S]
 gi|292674945|dbj|BAI96463.1| DNA repair protein RecN [Sphingobium japonicum UT26S]
          Length = 554

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 7  IKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTR 66
          +  L+I       +L L F +   +  G+ G GK+ +L+++      R     + + + R
Sbjct: 2  LTALSIRNVVLIEALDLDFGSGLGVLTGETGAGKSILLDSLGLALGAR-----ADSGLVR 56

Query: 67 IGSPSFFSTFARVEGMEGLADIS 89
           G     S  A  E       ++
Sbjct: 57 NGEAQA-SVAATFEAPRAGHRVT 78


>gi|281364022|ref|NP_726199.3| rad50 [Drosophila melanogaster]
 gi|272432636|gb|AAF46847.3| rad50 [Drosophila melanogaster]
          Length = 1318

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 7  IKFLNISEFRNY-----ASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPG 53
          I+ L+I   R++         + F +  T+ +G+NG GKT ++E + +   G
Sbjct: 4  IESLSIQGIRSFGTYADDLQSIKFSSPVTLILGENGCGKTTVVECLKYALTG 55



 Score = 37.6 bits (86), Expect = 3.5,   Method: Composition-based stats.
 Identities = 57/336 (16%), Positives = 118/336 (35%), Gaps = 52/336 (15%)

Query: 60   SYADVTRIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKH 119
               ++            A +       + +IK E  + ++V     ++  ++ +++    
Sbjct: 982  KLDEIIMASKDKLRKLEAEISLKTDELE-TIKTECSNQQTVERDLKDNRELKQLEDKEAK 1040

Query: 120  LRISWLVPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFD 179
            LR                 E  + LD+ +  +D        +   L + R++        
Sbjct: 1041 LR-----------------ESCQVLDKQLGNLD--FHSVSKEKVNLTKQRDKATVRKGEL 1081

Query: 180  SSWCSSIEAQMAELGVKINIAR-VEMINALSSLIMEY----VQKENFPHIKLSLTGFL-- 232
                  I +Q+ +L  +I+  R  E +        E     +  E+    +L+L   L  
Sbjct: 1082 LGQLGEIHSQVNKLQREIDEPRFKESLKNFRKANYEIEVTRLCIEDLGQYRLALEWALIQ 1141

Query: 233  -DGKFDQSFCALKEEYAKKLFDGRKMDSMSRRTLIGPH--RSDLIVDYCDKAIT------ 283
               +  +    L  EY +K++ G  +D +  +T        +D    Y  + +       
Sbjct: 1142 FHSEKMEMINRLIREYWRKIYRGNDIDYIQVKTDEVSSDASADRRKTYNYRVVQSKNYSE 1201

Query: 284  ---IAHGSTGEQKVVLVGIFLAHARLISNTTGFAPILLLDEISAHLDEDKRNALFRIV-- 338
                   S G++ +  + I LA A   S+  G   +L LDE + +LD    N+L   +  
Sbjct: 1202 IEMRGRCSAGQRVLASLIIRLALAETFSSNCG---VLALDEPTTNLDRANINSLCEALNC 1258

Query: 339  --TDIGSQ-----IFMTGTDKSVFDSLNETAKFMRI 367
               +  SQ     I +T  D++   SL +   + R+
Sbjct: 1259 IVEERQSQSNFMLIIITH-DENFVSSLGKITSYHRV 1293


>gi|253732499|ref|ZP_04866664.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253723780|gb|EES92509.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 978

 Score = 41.8 bits (97), Expect = 0.18,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 35/249 (14%)

Query: 155 HRRRMIDFERLMR----GRNRLLTEGYFDSSWCSSIEAQMAELGVKINIARVEMIN---- 206
           +   +  F  L +                    + +E +   L  +++    + +     
Sbjct: 729 YTSNLSRFNDLTKYLENQNYSYELSSSLSEKTTAQLEEEDHLLATQVDEYNEQYLEMQAQ 788

Query: 207 --ALSSLIMEYVQKENFPHIKLSLTGFL--------DGKFDQSFCALKEEYAKKLFDGR- 255
              LS+ I          +++               D        +L +E+ K++ D R 
Sbjct: 789 VSDLSAQINHMETDTTLANLRHEYHSLKNQLNDIAKDWASLSYLQSLVDEHIKQIKDKRL 848

Query: 256 ------KMDSMS-----RRTLIGPHRSDLIVDYCDKAI-TIAHGSTGEQKVVLVGIFLAH 303
                  ++ +      R T+I  +   + V + +  +      S   ++++ V + ++ 
Sbjct: 849 PQVINEAVEILKHLTDGRYTMINYNEDSITVKHVNGQLYDPVELSQSTKELLYVALRISL 908

Query: 304 ARLISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGS--QIFMTGTDKSVFDSLNET 361
            +++         L++D+   H D+ +   +   +  +    Q+      K       E 
Sbjct: 909 IKVLRPYY--PFPLIVDDAFVHFDKKRTEKMLNYLRSLSEHYQVLYFTCVKDNIVPSKEV 966

Query: 362 AKFMRISNH 370
               +I   
Sbjct: 967 ITLNKIEEG 975


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.149    0.416 

Lambda     K      H
   0.267   0.0459    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,651,721,185
Number of Sequences: 14124377
Number of extensions: 276010412
Number of successful extensions: 1616237
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 10632
Number of HSP's successfully gapped in prelim test: 12567
Number of HSP's that attempted gapping in prelim test: 1563945
Number of HSP's gapped (non-prelim): 45515
length of query: 375
length of database: 4,842,793,630
effective HSP length: 141
effective length of query: 234
effective length of database: 2,851,256,473
effective search space: 667194014682
effective search space used: 667194014682
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 82 (36.0 bits)